cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
title: ÐÐ°ÐºÐ¾Ð½Ð¾Ð¼ÐµÑÐ½Ð¾ÑÑÐ¸ Ð¸Ð·Ð¼ÐµÐ½ÐµÐ½Ð¸Ñ ÑÑÐ¸Ð±Ð¾ÑÐµÑ Ð½Ð¸ÑÐµÑÐºÐ¸Ñ ÑÐ²Ð¾Ð¹ÑÑÐ² Ð¿Ð»Ð°ÑÑÐ¸ÑÐ½ÑÑ ÑÐ¼Ð°Ð·Ð¾ÑÐ½ÑÑ Ð¼Ð°ÑÐµÑÐ¸Ð°Ð»Ð¾Ð², ÑÐ¾Ð´ÐµÑÐ¶Ð°ÑÐ¸Ñ Ð¿Ð¾Ð¿ÑÐ»ÑÑÐ¸Ð¸ Ð¼Ð¸ÐºÑÐ¾Ð¾ÑÐ³Ð°Ð½Ð¸Ð·Ð¼Ð¾Ð²
title: ÑÐ¿ÐµÑÐ¸Ð°Ð»ÑÐ½Ð¾ÑÑÑ 2.5.3. Ð¢ÑÐµÐ½Ð¸Ðµ Ð¸ Ð¸Ð·Ð½Ð¾Ñ Ð² Ð¼Ð°ÑÐ¸Ð½Ð°Ñ
titleType: Subtitle
Creators: name: ÐÐ¸Ð¼Ð¸Ð½, ÐÐµÐ½Ð¸Ñ
Publisher: name: Ð¡Ð°Ð½ÐºÑ-ÐÐµÑÐµÑÐ±ÑÑÐ³ÑÐºÐ¸Ð¹ Ð¿Ð¾Ð»Ð¸ÑÐµÑÐ½Ð¸ÑÐµÑÐºÐ¸Ð¹ ÑÐ½Ð¸Ð²ÐµÑÑÐ¸ÑÐµÑ ÐÐµÑÑÐ° ÐÐµÐ»Ð¸ÐºÐ¾Ð³Ð¾
Year: 2024
Subjects: ÐÐ°ÑÐµÐ¼Ð°ÑÐ¸ÑÐµÑÐºÐ¾Ðµ Ð¼Ð¾Ð´ÐµÐ»Ð¸ÑÐ¾Ð²Ð°Ð½Ð¸Ðµ
Ð¡Ð¼Ð°Ð·Ð¾ÑÐ½ÑÐµ Ð¼Ð°ÑÐµÑÐ¸Ð°Ð»Ñ
ÑÑÐ¸Ð±Ð¾ÑÐµÑ Ð½Ð¸ÑÐµÑÐºÐ¸Ðµ ÑÐ²Ð¾Ð¹ÑÑÐ²Ð°
ÑÐµÑÐ¿ÐµÐ½ÑÐ¸Ð½Ð¸Ñ
Ð³ÑÐ¸Ð±Ñ Aspergillus niger
ÑÐ¼Ð°Ð·Ð¾ÑÐ½ÑÐ¹ ÑÐ»Ð¾Ð¹

description: ÐÐ°Ð½Ð½Ð°Ñ ÑÐ°Ð±Ð¾ÑÐ° Ð¿Ð¾ÑÐ²ÑÑÐµÐ½Ð° Ð²ÑÑÐ²Ð»ÐµÐ½Ð¸Ñ Ð·Ð°ÐºÐ¾Ð½Ð¾Ð¼ÐµÑÐ½Ð¾ÑÑÐµÐ¹ Ð¸Ð·Ð¼ÐµÐ½ÐµÐ½Ð¸Ñ ÑÑÐ¸Ð±Ð¾ÑÐµÑÐ½Ð¸ÑÐµÑÐºÐ¸Ñ ÑÐ²Ð¾Ð¹ÑÑÐ² Ð¿Ð»Ð°ÑÑÐ¸ÑÐ½ÑÑ ÑÐ¼Ð°Ð·Ð¾ÑÐ½ÑÑ Ð¼Ð°ÑÐµÑÐ¸Ð°Ð»Ð¾Ð², ÑÐ¾Ð´ÐµÑÐ¶Ð°ÑÐ¸Ñ Ð¿Ð¾Ð¿ÑÐ»ÑÑÐ¸Ð¸ Ð¼Ð¸ÐºÑÐ¾Ð¾ÑÐ³Ð°Ð½Ð¸Ð·Ð¼Ð¾Ð². Ð ÑÐµÐ·ÑÐ»ÑÑÐ°ÑÐµ Ð¸ÑÑÐ»ÐµÐ´Ð¾Ð²Ð°Ð½Ð¸Ñ Ð±ÑÐ»Ð¸ ÑÐ°Ð·ÑÐ°Ð±Ð¾ÑÐ°Ð½Ñ Ð¼Ð°ÑÐµÐ¼Ð°ÑÐ¸ÑÐµÑÐºÐ¸Ðµ Ð¼Ð¾Ð´ÐµÐ»Ð¸ Ð·Ð°Ð²Ð¸ÑÐ¸Ð¼Ð¾ÑÑÐµÐ¹ ÑÐ°ÑÐ°ÐºÑÐµÑÐ¸ÑÑÐ¸Ðº ÑÑÐµÐ½Ð¸Ñ Ð¸ Ð¸Ð·Ð½Ð°ÑÐ¸Ð²Ð°Ð½Ð¸Ñ Ð¾Ñ Ð¼Ð°ÑÑÐ¾Ð²Ð¾Ð¹ ÐºÐ¾Ð½ÑÐµÐ½ÑÑÐ°ÑÐ¸Ð¸ Ð´Ð¸ÑÐ¿ÐµÑÑÐ½Ð¾Ð³Ð¾ ÐºÐ¾Ð¼Ð¿Ð¾Ð½ÐµÐ½ÑÐ° Ð² Ð»Ð¸Ð½ÐµÐ¹Ð½Ð¾Ð¼ Ð¿ÑÐ¸Ð±Ð»Ð¸Ð¶ÐµÐ½Ð¸Ð¸. Ð Ð°Ð·ÑÐ°Ð±Ð¾ÑÐ°Ð½Ñ Ð¿Ð»Ð°Ð½Ñ Ð¸ Ð¿ÑÐ¾Ð²ÐµÐ´ÐµÐ½Ñ ÑÑÑÑÑÐ°ÐºÑÐ¾ÑÐ½ÑÐµ ÑÐºÑÐ¿ÐµÑÐ¸Ð¼ÐµÐ½ÑÑ Ð´Ð»Ñ Ð²ÑÑÐ²Ð»ÐµÐ½Ð¸Ñ Ð·Ð°Ð²Ð¸ÑÐ¸Ð¼Ð¾ÑÑÐµÐ¹ ÑÑÐ¸Ð±Ð¾ÑÐµÑÐ½Ð¸ÑÐµÑÐºÐ¸Ñ ÑÐ°ÑÐ°ÐºÑÐµÑÐ¸ÑÑÐ¸Ðº Ð¾Ñ Ð¿ÑÐµÐ´ÐµÐ»ÑÐ½Ð¾Ð³Ð¾ Ð½Ð°Ð¿ÑÑÐ¶ÐµÐ½Ð¸Ñ ÑÐ´Ð²Ð¸Ð³Ð° Ð¿Ð»Ð°ÑÑÐ¸ÑÐ½Ð¾Ð³Ð¾ ÑÐ¼Ð°Ð·Ð¾ÑÐ½Ð¾Ð³Ð¾ Ð¼Ð°ÑÐµÑÐ¸Ð°Ð»Ð°, ÐºÐ¾Ð½ÑÐµÐ½ÑÑÐ°ÑÐ¸Ð¸ ÑÐµÑÐ¿ÐµÐ½ÑÐ¸Ð½Ð¸ÑÐ° Ð¸ Ð³ÑÐ¸Ð±Ð¾Ð² Ð²Ð¸Ð´Ð° Aspergillus niger Ð² ÑÐ¼Ð°Ð·Ð¾ÑÐ½Ð¾Ð¼ ÑÐ»Ð¾Ðµ. ÐÑÑÐ²Ð»ÐµÐ½Ñ Ð°Ð½ÑÐ¸ÑÑÐ¸ÐºÑÐ¸Ð¾Ð½Ð½ÑÐµ, Ð¿ÑÐ¾ÑÐ¸Ð²Ð¾Ð¸Ð·Ð½Ð¾ÑÐ½ÑÐµ Ð¸ ÑÐ¸Ð½ÐµÑÐ³ÐµÑÐ¸ÑÐµÑÐºÐ¸Ðµ ÑÑÑÐµÐºÑÑ Ð¿ÑÐ¸ Ð½Ð°Ð»Ð¸ÑÐ¸Ð¸ ÑÐµÑÐ¿ÐµÐ½ÑÐ¸Ð½Ð¸ÑÐ° Ð¸ Ð³ÑÐ¸Ð±Ð¾Ð² Ð² ÑÐ¼Ð°Ð·Ð¾ÑÐ½Ð¾Ð¼ ÑÐ»Ð¾Ðµ. ÐÐ° Ð¾ÑÐ½Ð¾Ð²Ðµ Ð°Ð½Ð°Ð»Ð¸Ð·Ð° ÑÑÑÐ°Ð½Ð¾Ð²Ð»ÐµÐ½Ð½ÑÑ Ð² ÑÐºÑÐ¿ÐµÑÐ¸Ð¼ÐµÐ½ÑÐ°Ñ ÑÑÑÑÑÐ°ÐºÑÐ¾ÑÐ½ÑÑ Ð·Ð°Ð²Ð¸ÑÐ¸Ð¼Ð¾ÑÑÐµÐ¹ Ð²ÑÑÐ²Ð»ÐµÐ½Ñ Ð·Ð°ÐºÐ¾Ð½Ð¾Ð¼ÐµÑÐ½Ð¾ÑÑÐ¸ Ð¸Ð·Ð¼ÐµÐ½ÐµÐ½Ð¸Ñ ÑÑÐ¸Ð±Ð¾ÑÐµÑÐ½Ð¸ÑÐµÑÐºÐ¸Ñ ÑÐ²Ð¾Ð¹ÑÑÐ² Ð¿Ð»Ð°ÑÑÐ¸ÑÐ½ÑÑ ÑÐ¼Ð°Ð·Ð¾ÑÐ½ÑÑ Ð¼Ð°ÑÐµÑÐ¸Ð°Ð»Ð¾Ð², ÑÐ¾Ð´ÐµÑÐ¶Ð°ÑÐ¸Ñ ÑÐµÑÐ¿ÐµÐ½ÑÐ¸Ð½Ð¸Ñ Ð¸ Ð³ÑÐ¸Ð±Ñ Aspergillus niger Ð² ÑÐ¼Ð°Ð·Ð¾ÑÐ½Ð¾Ð¼ ÑÐ»Ð¾Ðµ, Ð¸ Ð¿Ð¾Ð´ÑÐ²ÐµÑÐ¶Ð´ÐµÐ½Ð° ÑÐ¿ÑÐ°Ð²ÐµÐ´Ð»Ð¸Ð²Ð¾ÑÑÑ ÑÐ°Ð·ÑÐ°Ð±Ð¾ÑÐ°Ð½Ð½ÑÑ Ð¼Ð°ÑÐµÐ¼Ð°ÑÐ¸ÑÐµÑÐºÐ¸Ñ Ð¼Ð¾Ð´ÐµÐ»ÐµÐ¹.
Dicerura scirpicola Kieffer 1898
Creators: name: Jaschhof, Mathias
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Cecidomyiidae
Dicerura
Dicerura scirpicola

description: Dicerura scirpicola Kieffer, 1898
Fig. 12
Dicerura scirpicola, the type species of the genus Dicerura, was discovered more than 120 years ago in France (Kieffer 1898). Kiefferʼs syntypes are lost and the species had not been recognized since, so our understanding of it was previously limited to information provided in the original description. With the find of a single male in a Malaise trap sample from Bavaria, D. scirpicola may now be regarded as rediscovered. Its identification was made possible by Kieffer’s illustration of the male terminalia (Kieffer 1899: fig. 2), which shows two structures diagnostic of this species: the large, characteristically shaped gonostylus and the large, furcate apex of the aedeagal apodeme.
Revised diagnosis
Morphology
The unusually long gonostylus is slightly bent, tapered towards the apex, and slightly bulged basally, which together makes for an unmistakable outline (Fig. 12A). The linkage between gonostylus and gonocoxa is peculiar for its two joints, the usual one laterally and an additional one dorsally (↓ 1, Fig. 12B). The gonocoxal synsclerite has two pairs of setose processes on either side of the ventral emargination (↓ 2, Fig. 12A); the aedeagal apodeme ends in a furca of considerable size (Fig. C); the tegmen, whose lateral and posterior margins are concave, has clusters of barb-like knobs apicolaterally (↓ 3, Fig. 12C); and the bilobed posterior portion of the ninth tergite is covered in dense, large microtrichia (↓ 4, Fig. 12B).
DNA barcode
The CO1 sequence (651bp) of the specimen listed below is available in BIN BOLD:AEI1289. Search on BOLD’s BIN Database retrieved a further six matches for this BIN, as Cecidomyiidae sp. from Norway (accessed 26 Aug. 2023).
Material examined
GERMANY ‒ Bavaria • 1 ♂; Upper Palatinate, Bodenwöhr, Postlohe, Sattelbogenweiher; 49°26′86″ N, 12°37′88″ E; elev. 382 m; 25 Jun.‒13 Jul. 2016; D. Doczkal and J. Voith leg.; Malaise trap; pond edge; BOLD GBDTA10118-21; ZSM-DIP-42305-D12.
Distribution
Germany (new record); France (Gagné & Jaschhof 2021).
description: Published as part of Jaschhof, Mathias, 2024, New taxa and new records of Winnertziinae and Porricondylinae (Diptera: Cecidomyiidae) from Germany, pp. 1-134 in European Journal of Taxonomy 953 on pages 54-55, DOI: 10.5852/ejt.2024.953.2649, http://zenodo.org/record/13749629
Lamia textor
Creators: name: Barševskis, Arvīds
name: Cibuļskis, Raimonds
name: Shavrin, Alexey
name: Anichtchenko, Aleksandre
name: Valainis, Uldis
name: Balalaikins, Maksims
name: Vorobjova, Irina
name: Litvinceva, Jeļena
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Lamia
Lamia textor

description: 297. Lamia textor (Linnaeus, 1758) – Demene,
21.06.200 0., (1, R.Cibuļskis leg.); Dviete, Nature Park „Dvietes paliene”, 2008, (1, J.Timšāne leg.).
description: Published as part of Barševskis, Arvīds, Cibuļskis, Raimonds, Shavrin, Alexey, Anichtchenko, Aleksandre, Valainis, Uldis, Balalaikins, Maksims, Vorobjova, Irina & Litvinceva, Jeļena, 2012, Faunistic Records Of The Beetles (Hexapoda: Coleoptera) In Latvia. 4, pp. 85-117 in Acta Biologica Universitatis Daugavpiliensis 12 (4) on page 115, DOI: 10.5281/zenodo.12647104
Additional file 1: Table S1. of Altered machinery of protein synthesis is region- and stage-dependent and is associated with α-synuclein oligomers in Parkinson’s disease
Creators: name: Garcia-Esparcia, Paula
name: Hernández-Ortega, Karina
name: Anusha Koneti
name: Gil, Laura
name: Delgado-Morales, Raul
name: Castaño, Ester
name: Carmona, Margarita
name: Isidre Ferrer
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology

description: Summary of the main individual characteristics of the cases used in this study. M: male; F: female; P-M: post-mortem delay (hours, minutes); PD Braak: Parkinson’s disease-related pathology stages 1–6 of Braak; 0: no neurological or neuropathological anomalies; FC: frontal cortex area 8; SN: substantia nigra; AG: angular gyrus; PC: precuneus; PUT: putamen; RIN: RNA integrity number; WB: western blot; IHC: immunohistochemistry; OLI: α-synuclein oligomeric species. (DOC 331 kb)
Saperda scalaris
Creators: name: Barševskis, Arvīds
name: Cibuļskis, Raimonds
name: Shavrin, Alexey
name: Anichtchenko, Aleksandre
name: Valainis, Uldis
name: Balalaikins, Maksims
name: Vorobjova, Irina
name: Litvinceva, Jeļena
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Saperda
Saperda scalaris

description: 298. Saperda scalaris (Linnaeus, 1758) –
Kastire (Preiļi env.), 10.06.- 01.08.2009., (1, A.Čerkasova leg.).
description: Published as part of Barševskis, Arvīds, Cibuļskis, Raimonds, Shavrin, Alexey, Anichtchenko, Aleksandre, Valainis, Uldis, Balalaikins, Maksims, Vorobjova, Irina & Litvinceva, Jeļena, 2012, Faunistic Records Of The Beetles (Hexapoda: Coleoptera) In Latvia. 4, pp. 85-117 in Acta Biologica Universitatis Daugavpiliensis 12 (4) on page 115, DOI: 10.5281/zenodo.12647104
MossFormer2: Combining Transformer and RNN-Free Recurrent Network for Enhanced Time-Domain Monaural Speech Separation
Creators: Shengkui Zhao
Yukun Ma
Chongjia Ni
Chong Zhang
Hao Wang  Trung Hieu Nguyen
Kun Zhou
Jia Qi Yip
Dianwen Ng
Bin Ma
Publisher: name: IEEE Signal Processing Society
Year: 2024

description: Our previously proposed MossFormer has achieved promising performance in monaural speech separation. However, it predominantly adopts a self-attention-based MossFormer module, which tends to emphasize longer-range, coarser-scale dependencies, with a deficiency in effectively modelling finer-scale recurrent patterns. In this paper, we introduce a novel hybrid model that provides the capabilities to model both long-range, coarse-scale dependencies and fine-scale recurrent patterns by integrating a recurrent module into the MossFormer framework. Instead of applying the recurrent neural networks (RNNs) that use traditional recurrent connections, we present a recurrent module based on a feedforward sequential memory network (FSMN), which is considered "RNN-free" recurrent network due to the ability to capture recurrent patterns without using recurrent connections. Our recurrent module mainly comprises an enhanced dilated FSMN block by using gated convolutional units (GCU) and dense connections. In addition, a bottleneck layer and an output layer are also added for controlling information flow.  The recurrent module relies on linear projections and convolutions for seamless, parallel processing of the entire sequence. The integrated MossFormer2 hybrid model demonstrates remarkable enhancements over MossFormer and surpasses other state-of-the-art methods in WSJ0-2/3mix, Libri2Mix, and WHAM!/WHAMR! benchmarks. Our source code is integrated into SpeechBrain toolkit and is also released at https://github.com/alibabasglab/MossFormer2.
Lilioceris merdigera
Creators: name: Barševskis, Arvīds
name: Cibuļskis, Raimonds
name: Shavrin, Alexey
name: Anichtchenko, Aleksandre
name: Valainis, Uldis
name: Balalaikins, Maksims
name: Vorobjova, Irina
name: Litvinceva, Jeļena
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Lilioceris
Lilioceris merdigera

description: 299. Lilioceris merdigera (Linnaeus, 1758) –
Preiļi distr., Jersika, ‘Kurpnieki’, 17.06.201 2., (1, A.Barševskis leg.).
description: Published as part of Barševskis, Arvīds, Cibuļskis, Raimonds, Shavrin, Alexey, Anichtchenko, Aleksandre, Valainis, Uldis, Balalaikins, Maksims, Vorobjova, Irina & Litvinceva, Jeļena, 2012, Faunistic Records Of The Beetles (Hexapoda: Coleoptera) In Latvia. 4, pp. 85-117 in Acta Biologica Universitatis Daugavpiliensis 12 (4) on page 115, DOI: 10.5281/zenodo.12647104
Dicerura Kieffer 1898
Creators: name: Jaschhof, Mathias
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Cecidomyiidae
Dicerura

description: Genus Dicerura Kieffer, 1898
Dicerura, the largest genus of the tribe Dicerurini, contains 32 species in the Holarctic region and 19 in Europe (Gagné & Jaschhof 2021). Males of the European species can be identified using the morphological descripions published by Jaschhof & Jaschhof (2013) and Jaschhof & Spungis (2018).
In Germany, the genus was previously known from a single species (Jaschhof & Jaschhof 2021b); the discovery of a second Dicerura is detailed here.
description: Published as part of Jaschhof, Mathias, 2024, New taxa and new records of Winnertziinae and Porricondylinae (Diptera: Cecidomyiidae) from Germany, pp. 1-134 in European Journal of Taxonomy 953 on pages 53-54, DOI: 10.5852/ejt.2024.953.2649, http://zenodo.org/record/13749629
Neurepidosis Spungis 1987
Creators: name: Jaschhof, Mathias
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Cecidomyiidae
Neurepidosis

description: Genus Neurepidosis Spungis, 1987
This genus of previously 14 species in the Holarctic region and 10 in Europe (Gagné & Jaschhof 2021) is shown here for the first time to occur in Germany. Of a total of seven species identified here, two are new to science. The taxonomy of Neurepidosis was most recently reviewed by Jaschhof & Jaschhof (2013, 2019a).
description: Published as part of Jaschhof, Mathias, 2024, New taxa and new records of Winnertziinae and Porricondylinae (Diptera: Cecidomyiidae) from Germany, pp. 1-134 in European Journal of Taxonomy 953 on page 55, DOI: 10.5852/ejt.2024.953.2649, http://zenodo.org/record/13749629
100 ЛЕТ СО ДНЯ РОЖДЕНИЯ Г.Х. ШАХНАЗАРОВА ОСНОВАТЕЛЯ ПОЛИТОЛОГИИ В НАШЕЙ СТРАНЕ
Creators: name: Макаренко Григорий Иванович
Publisher: name: Мониторинг правоприменения
Year: 2024

description: Четвертого октября 2024 года исполняется 100 лет со дня рождения Георгия Хосроевича Шахназарова — ученого, политика и основателя политологии в Советском Союзе, а также крупного политолога России. Биография Георгия Хосроевича типична для российского патриота: в годы войны он командовал взводом армейской пушечно-артиллерийской батареи, окончил войну в Кёнигсберге. После демобилизации поступил и в 1949 г. закончил юридический факультет государственного университета в Баку, затем в 1952 г. — аспирантуру Института государства и права АН СССР и в том же году защитил диссертацию, затем работал в журналах Политиздата, а с 1964 г. уже работал в Международном отделе ЦК КПСС. К сфере его ответственности с 1972 г. относились вопросы отношений с Германской Демократической Республикой, Польской Народной Республикой, Чехословацкой Социалистической Республикой, Республикой Куба. Был инициатором создания, а в 1973 г. возглавил Советскую ассоциацию политических наук. В 1988 г. назначен помощником Генерального секретаря ЦК КПСС, а позже — советником Президента СССР Михаила Горбачёва.
Additional file 3: Table S3. of Altered machinery of protein synthesis is region- and stage-dependent and is associated with α-synuclein oligomers in Parkinson’s disease
Creators: name: Garcia-Esparcia, Paula
name: Hernández-Ortega, Karina
name: Anusha Koneti
name: Gil, Laura
name: Delgado-Morales, Raul
name: Castaño, Ester
name: Carmona, Margarita
name: Isidre Ferrer
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Marine Biology
subject: Computational Biology

description: Summary of the antibodies used for western-blotting (wb) and immunohistochemistry (ihq) or immunofluorescence (if); rb: rabbit polyclonal: m: mouse monoclonal; ip: immunoprecipitation for FACS studies. (DOC 54 kb)
Additional file 8: Table S8. of Altered machinery of protein synthesis is region- and stage-dependent and is associated with α-synuclein oligomers in Parkinson’s disease
Creators: name: Garcia-Esparcia, Paula
name: Hernández-Ortega, Karina
name: Anusha Koneti
name: Gil, Laura
name: Delgado-Morales, Raul
name: Castaño, Ester
name: Carmona, Margarita
name: Isidre Ferrer
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Expression levels of mRNAs encoding nucleolar proteins 18S rRNA and 28S rRNA, and mRNAs encoding ribosomal proteins in the putamen. MA: middle-aged individuals with no PD pathology, 1–6 stages of PD (DOC 48 kb)
Neurepidosis conchata Fedotova & Sidorenko 2008
Creators: name: Jaschhof, Mathias
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Cecidomyiidae
Neurepidosis
Neurepidosis conchata

description: Neurepidosis conchata Fedotova & Sidorenko, 2008
Morphological identification
Jaschhof & Jaschhof (2013).
DNA barcode
CO1 sequences (642‒652bp) of the three specimens listed below are available in BIN BOLD:AAV5570. Search on BOLD’s BIN Database retrieved 30 matches for this BIN, all as Cecidomyiidae sp. from Canada (accessed 26 Aug. 2023).
Material examined
GERMANY ‒ Baden-Württemberg • 1 ♂; Malsch, Luderbusch; 48°91′44″ N, 8°33′24″ E; elev. 112 m; 3‒10 May 2020; D. Doczkal and K. Grabow leg.; Malaise trap; willow/aspen forest and game browsing field; BOLD GBDTA10139-21; ZSM-DIP-42305-F09 • 1 ♂; same data as for preceding but 48°91′20″ N, 8°33′26″ E; elev. 112 m; 17‒24 May 2020; windthrow of willow and aspen trees; BOLD DTIII8704-22; ZSM-DIP-42478-E11 • 1 ♂; same data as for preceding; BOLD DTIII8740-22; ZSM-DIP-42478-H11.
Distribution
Germany (new record); Sweden, Far East of Russia (Gagné & Jaschhof 2021).
description: Published as part of Jaschhof, Mathias, 2024, New taxa and new records of Winnertziinae and Porricondylinae (Diptera: Cecidomyiidae) from Germany, pp. 1-134 in European Journal of Taxonomy 953 on page 55, DOI: 10.5852/ejt.2024.953.2649, http://zenodo.org/record/13749629
Erratum to: Measurement of differential cross sections for single diffractive dissociation in s = 8 TeV pp collisions using the ATLAS ALFA spectrometer (Journal of High Energy Physics, (2020), 2020, 2, (42), 10.1007/JHEP02(2020)042)
Creators: name: Aad, G
name: Abbott, B
name: Abbott, DC
name: Abdinov, O
name: Abed Abud, A
name: Abeling, K
name: Abhayasinghe, DK
name: Abidi, SH
name: AbouZeid, OS
name: Abraham, NL
name: Abramowicz, H
name: Abreu, H
name: Abulaiti, Y
name: Acharya, BS
name: Achkar, B
name: Adachi, S
name: Adam, L
name: Adam Bourdarios, C
name: Adamczyk, L
name: Adamek, L
name: Adelman, J
name: Adersberger, M
name: Adiguzel, A
name: Adorni, S
name: Adye, T
name: Affolder, AA
name: Afik, Y
name: Agapopoulou, C
name: Agaras, MN
name: Aggarwal, A
name: Agheorghiesei, C
name: Aguilar-Saavedra, JA
name: Ahmadov, F
name: Ahmed, WS
name: Ai, X
name: Aielli, G
name: Akatsuka, S
name: Åkesson, TPA
name: Akilli, E
name: Akimov, AV
name: Al Khoury, K
name: Alberghi, GL
name: Albert, J
name: Alconada Verzini, MJ
name: Alderweireldt, S
name: Aleksa, M
name: Aleksandrov, IN
name: Alexa, C
name: Alexandre, D
name: Alexopoulos, T
name: Alfonsi, A
name: Alhroob, M
name: Ali, B
name: Alimonti, G
name: Alison, J
name: Alkire, SP
name: Allaire, C
name: Allbrooke, BMM
name: Allen, BW
name: Allport, PP
name: Aloisio, A
name: Alonso, A
name: Alonso, F
name: Alpigiani, C
name: Alshehri, AA
name: Alvarez Estevez, M
name: Álvarez Piqueras, D
name: Alviggi, MG
name: Amaral Coutinho, Y
name: Ambler, A
name: Ambroz, L
name: Amelung, C
name: Amidei, D
name: Amor Dos Santos, SP
name: Amoroso, S
name: Amrouche, CS
name: An, F
name: Anastopoulos, C
name: Andari, N
name: Andeen, T
name: Anders, CF
name: Anders, JK
name: Andreazza, A
name: Andrei, V
name: Anelli, CR
name: Angelidakis, S
name: Angerami, A
name: Anisenkov, AV
name: Annovi, A
name: Antel, C
name: Anthony, MT
name: Antonelli, M
name: Antrim, DJA
name: Anulli, F
name: Aoki, M
name: Aparisi Pozo, JA
name: Aperio Bella, L
name: Arabidze, G
name: Araque, JP
name: Araujo Ferraz, V
Publisher: name: Springer Science and Business Media LLC
Year: 2020
Subjects: 5106 Nuclear and Plasma Physics
5107 Particle and High Energy Physics
51 Physical Sciences

description: Figure 5b of the paper [1] contained a misinterpretation in the comparison between the reported new ATLAS measurement of the process pp → Xp and previously published CMS data [2]. The ATLAS measurement corresponds to cases where either proton dissociates.
Neurepidosis emarginata Jaschhof & Jaschhof 2019
Creators: name: Jaschhof, Mathias
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Cecidomyiidae
Neurepidosis
Neurepidosis emarginata

description: Neurepidosis emarginata Jaschhof & Jaschhof, 2019
Morphological identification
Jaschhof & Jaschhof (2019a).
DNA barcode
The CO1 sequence (640bp) of the specimen listed below is available in BIN BOLD:AEY6609. Search on BOLD’s BIN Database retrieved no further result for this BIN (accessed 26 Aug. 2023).
Material examined
GERMANY ‒ Bavaria • 1 ♂; Allgäu, Balderschwang, Leiterberg; 47°48′58″ N, 10°08′99″ E; elev. 1290 m; 17 May‒3 Jun. 2017; D. Doczkal and J. Voith leg.; Malaise trap; BOLD DTIII8491-22; ZSM-DIP-42474-C04.
Distribution
Germany (new record); Sweden, Czech Republic (Gagné & Jaschhof 2021).
description: Published as part of Jaschhof, Mathias, 2024, New taxa and new records of Winnertziinae and Porricondylinae (Diptera: Cecidomyiidae) from Germany, pp. 1-134 in European Journal of Taxonomy 953 on page 56, DOI: 10.5852/ejt.2024.953.2649, http://zenodo.org/record/13749629
Smaragdina aurita
Creators: name: Barševskis, Arvīds
name: Cibuļskis, Raimonds
name: Shavrin, Alexey
name: Anichtchenko, Aleksandre
name: Valainis, Uldis
name: Balalaikins, Maksims
name: Vorobjova, Irina
name: Litvinceva, Jeļena
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Smaragdina
Smaragdina aurita

description: 302. Smaragdina aurita (Linnaeus, 1767)
 - Tukums distr., Ķemeri National park, 57°02’18”N, 23°24’11”E, 06.05.201 0. (1, M.Nitcis, R. Cibuļskis leg.).
description: Published as part of Barševskis, Arvīds, Cibuļskis, Raimonds, Shavrin, Alexey, Anichtchenko, Aleksandre, Valainis, Uldis, Balalaikins, Maksims, Vorobjova, Irina & Litvinceva, Jeļena, 2012, Faunistic Records Of The Beetles (Hexapoda: Coleoptera) In Latvia. 4, pp. 85-117 in Acta Biologica Universitatis Daugavpiliensis 12 (4) on page 115, DOI: 10.5281/zenodo.12647104
Additional file 2: Figure S2. of CXCR3 signaling in glial cells ameliorates experimental autoimmune encephalomyelitis by restraining the generation of a pro-Th17 cytokine milieu and reducing CNS-infiltrating Th17 cells
Creators: name: Chen-Yen Chung
name: Liao, Fang
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: 60506 Virology

description: Th17 cells are detected in the spinal cord by immunofluorescence assay. a Frozen sections of the spinal cord from MOG-immunized WT and CXCR3-/- (KO) mice at peak of disease (day 15) were subjected to immunofluorescence staining with rat anti-mouse CD4 / biotin conjugateddonkey anti-rat / Alexa 555-conjugated streptavidin (red) and goat anti-mouse IL-17 / Alexa 488-conjugated donkey anti-goat (green) followed by counterstaining with DAPI (blue). Arrowheads indicate IL-17+ cells and arrows indicate CD4+IL-17+ cells (Th17). b Same procedure in (a) was performed except that goat antimouse IL-17 was replaced by isotype control antibody. (PDF 375 kb)
Neurepidosis gracilis Spungis 1987
Creators: name: Jaschhof, Mathias
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Cecidomyiidae
Neurepidosis
Neurepidosis gracilis

description: Neurepidosis gracilis Spungis, 1987
Morphological identification
Jaschhof & Jaschhof (2013).
DNA barcode
The CO1sequences (651‒652bp) of the two specimens listed below are available in BIN BOLD:ACP6066. Search on BOLD ’ s BIN Database (accessed 26 Aug. 2023) retrieved a further 26 matches for this BIN, all as Cecidomyiidae sp. from Canada (11 matches), Norway (11), Germany (three), and Russia (one).
Material examined
GERMANY ‒ Bavaria • 1 ♂; Upper Bavaria, Rudelzhausen; 48°57′84″ N, 11°86′26″ E; elev. 520 m; 16 Jul. 2019; LandKlif and J. Müller leg.; Malaise trap; BOLD GBDTA10070-21; ZSM-DIP-42304-H11 • 1 ♂; Deggendorf; 48°84′01″ N, 12°96′62″ E; elev. 377 m; 14 Jul. 2019; LandKlif and J. Müller leg.; Malaise trap; BOLD GBDTA10242-21; ZSM-DIP-42306-G05.
Distribution
Germany (new record); Sweden, Estonia, Latvia (Gagné & Jaschhof 2021).
description: Published as part of Jaschhof, Mathias, 2024, New taxa and new records of Winnertziinae and Porricondylinae (Diptera: Cecidomyiidae) from Germany, pp. 1-134 in European Journal of Taxonomy 953 on page 56, DOI: 10.5852/ejt.2024.953.2649, http://zenodo.org/record/13749629
Tropideres albirostris
Creators: name: Barševskis, Arvīds
name: Cibuļskis, Raimonds
name: Shavrin, Alexey
name: Anichtchenko, Aleksandre
name: Valainis, Uldis
name: Balalaikins, Maksims
name: Vorobjova, Irina
name: Litvinceva, Jeļena
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Anthribidae
Tropideres
Tropideres albirostris

description: 304. Tropideres albirostris (Herbst, 1783)
– Moricsala Isl., Moricsala Nature Reserve, 07.201 1., (1, A.Barševskis leg.).
description: Published as part of Barševskis, Arvīds, Cibuļskis, Raimonds, Shavrin, Alexey, Anichtchenko, Aleksandre, Valainis, Uldis, Balalaikins, Maksims, Vorobjova, Irina & Litvinceva, Jeļena, 2012, Faunistic Records Of The Beetles (Hexapoda: Coleoptera) In Latvia. 4, pp. 85-117 in Acta Biologica Universitatis Daugavpiliensis 12 (4) on page 116, DOI: 10.5281/zenodo.12647104
Additional file 1 of Inferring intra-motif dependencies of DNA binding sites from ChIP-seq data
Creators: name: Eggeling, Ralf
name: Roos, Teemu
name: MyllymĂ¤Ki, Petri
name: Grosse, Ivo
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Sequence logos of predicted binding sites. The file contains sequence logos of predicted binding sites for all 50 data sets and all five model orders. (PDF 4147.2 kb)
Lightning Talk- Situation-Aware Tranmit Beamforming for Automotive radar
Creators: Edoardo Focante
Nitin J. Myers
Geethu Joseph
Ashish Pandharipande
Publisher: name: IEEE Signal Processing Society
Year: 2024

description: Millimeter-wave radar is a common sensor modality used in automotive driving for target detection and perception. These radars can benefit from side information on the environment being sensed, such as lane topologies or data from other sensors.  Existing radars do not leverage this information to adapt waveforms or perform prior-aware inference. In this paper, we model the side information as an occupancy map and design transmit beamformers that are customized to the map. Our method maximizes the probability of detection in regions with a higher uncertainty on the presence of a target. Simulation results on the nuScenes dataset show that the designed beamformer achieves substantially higher detection rates than a conventional omnidirectional beamformer for the same transmitted power.
Tropideres dorsalis
Creators: name: Barševskis, Arvīds
name: Cibuļskis, Raimonds
name: Shavrin, Alexey
name: Anichtchenko, Aleksandre
name: Valainis, Uldis
name: Balalaikins, Maksims
name: Vorobjova, Irina
name: Litvinceva, Jeļena
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Anthribidae
Tropideres
Tropideres dorsalis

description: 305. Tropideres dorsalis (Thunberg, 1796) –
Vestiena, mixed forest clearing, 29.06.201 0., (1, A.Barševskis, U.Valainis leg.).
description: Published as part of Barševskis, Arvīds, Cibuļskis, Raimonds, Shavrin, Alexey, Anichtchenko, Aleksandre, Valainis, Uldis, Balalaikins, Maksims, Vorobjova, Irina & Litvinceva, Jeļena, 2012, Faunistic Records Of The Beetles (Hexapoda: Coleoptera) In Latvia. 4, pp. 85-117 in Acta Biologica Universitatis Daugavpiliensis 12 (4) on page 116, DOI: 10.5281/zenodo.12647104
INVESTIGATING THE CLUSTERS DISCOVERED BY PRE-TRAINED AV-HUBERT
Publisher: name: IEEE Signal Processing Society
Year: 2024

description: Self-supervised models, such as HuBERT and its audio-visual version AV-HuBERT, have demonstrated excellent performance on various tasks. The main factor for their success is the pre-training procedure, which requires only raw data without human transcription. During the self-supervised pre-training phase, HuBERT is trained to discover latent clusters in the training data, but these clusters are discarded, and only the last hidden layer is used by the conventional finetuning step. We investigate what latent information the AV-HuBERT model managed to uncover via its clusters and can we use them directly for speech recognition. To achieve this, we consider the sequence of cluster ids as a 'language' developed by the AV-HuBERT and attempt to translate it to English text via small LSTM-based models. These translation models enable us to investigate the relations between the clusters and the English alphabet, shedding light on groups of latent clusters specialized to recognise specific phonetic groups. Our results demonstrate that using the pre-trained system as a quantizer, we are able to compress the video to as low as 275 bit/sec while maintaining acceptable speech recognition accuracy. Furthermore, compared to the conventional finetuning step, our solution has considerably lower computational cost.
Neurepidosis hartschimmelhofensis Jaschhof, 2024, sp. nov.
Creators: name: Jaschhof, Mathias
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Cecidomyiidae
Neurepidosis
Neurepidosis hartschimmelhofensis

description: Neurepidosis hartschimmelhofensis sp. nov.
urn:lsid:zoobank.org:act: D08F9174-BB33-40C8-B928-E0F2297AEAB0
Fig. 13A
Diagnosis
The new species differs from all Neurepidosis described in the past by its gonocoxal synsclerite, whose ventral emargination has an unusually complex structure (Fig. 13A). In ventral view, the broadly sclerotized margins of the emargination appear to be double-layered, with both layers intertwined in a complicated way. Larvae and females of N. hartschimmelhofensis sp. nov. are unknown.
Etymology
The name refers to the type locality, Hartschimmelhof in southern Upper Bavaria, where the farmstead Gut Hartschimmel maintains a cultural landscape with extraordinarily rich biodiversity, thanks to many decades of practising extensive farming.
Type material
Holotype
GERMANY • ♂; Bavaria, Weilheim, Pähl, Hartschimmelhof; 47°94′24″ N, 11°18′33″ E; 20 Jun.‒12 Jul. 2020; D. Doczkal and K. Grabow leg.; Malaise trap; nutrient-poor pasture; ZSM-DIP-42303-B09.
Other characters
Male
BODY LENGTH. 1.4 mm.
HEAD. Eye bridge dorsally 1‒2 ommatidia long. Scape and pedicel brighter than flagellum. Length of flagellum unknown, only 10 flagellomeres retained; neck of fourth flagellomere 1.2 × as long as node (all flagellomeres are collapsed, the reason why the fourth is not illustrated here). Palpus 4-segmented, shorter than head height.
WING. Longer than body. Length / width ratio 2.8.
LEGS. Acropods not retained.
TERMINALIA (Fig. 13A). Posterior margin of ninth tergite almost straight, weakly sclerotized except for a small, sclerotized reinforcement medially. Gonocoxal synsclerite slightly broader than long (not considering the long dorsal apodemes that protrude beyond the anterior gonocoxal margin); ventral setae unusually sparse, confined mostly to posterior portions; ventral emargination narrow and unusually deep, below the emargination a more darkly pigmented area without setae or microtrichia; dorsoposterior portions only slightly protruding beyond ventroposterior portions. Gonostylus compact, barely twice as long as high, its apex narrowly rounded, covered with dense, large microtrichia. Tegmen strongly narrowed towards apex, with about 3 pairs of tiny, inconspicuous barbs subapically. Aedeagal apodeme massive, strongly sclerotized; its greatly extended base protrudes beyond anterior gonocoxal margin; apex weakly sclerotized, transitions seamlessly into tegminal apex.
description: Published as part of Jaschhof, Mathias, 2024, New taxa and new records of Winnertziinae and Porricondylinae (Diptera: Cecidomyiidae) from Germany, pp. 1-134 in European Journal of Taxonomy 953 on page 57, DOI: 10.5852/ejt.2024.953.2649, http://zenodo.org/record/13749629
Inducing Inductive Bias in Vision Transformer for EEG Classification
Publisher: name: IEEE Signal Processing Society
Year: 2024

description: Human brain signals are highly complex and dynamic in nature. Electroencephalogram (EEG) devices capture some of this complexity, both in space and in time, with a certain resolution. Recently, transformer-based models have been explored in various applications with different modalities of data. In this work, we introduce a transformer-based model for the classification of EEG signals, inspired by the recent success of the Vision Transformer (ViT) in image classification. Driven by the distinctive characteristics of the EEG data, we design a module that enables us to (1) extract spatio-temporal tokens inherent in the EEG signals and (2) integrate additional non-linearities to capture intricate and non-linear patterns in EEG signals. To that end, we introduce a new lightweight architectural component that combines our proposed attention model with convolution. This convolutional tokenization module forms the basis of our vision backbone referred to as Brain Signal Vision Transformer (BSVT). This architecture takes into account the spatial and temporal features in EEG datasets, leading to token embeddings that effectively capture the fusion of spatial-temporal information. Moreover, while transformer-based models typically perform well when provided with large datasets, here we show that our combination of the inherent inductive bias of Convolutional Neural Networks (CNN) with the transformer enables efficient training from scratch using relatively small datasets, with as few as 0.75M parameters. On the publicly available EEG dataset from Temple University Hospital (TUH Abnormal), our model achieves results comparable or superior to its counterpart ViT model with patchify stem.
Additional file 2: of How outcome prediction could affect patient decision making in knee replacements: a qualitative study
Creators: name: Barlow, Timothy
name: Scott, Patricia
name: Griffin, Damian
name: Realpe, Alba
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy
subject: Computational Biology

description: Focus group guide. (DOCX 25 kb)
Neurepidosis grytsjoenensis Jaschhof 2013
Creators: name: Jaschhof, Mathias
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Cecidomyiidae
Neurepidosis
Neurepidosis grytsjoenensis

description: Neurepidosis grytsjoenensis Jaschhof, 2013
Morphological identification
Jaschhof & Jaschhof (2013).
DNA barcode
The CO1 sequence (652bp) of the specimen listed below is available in BIN BOLD:ACX3049. Search on BOLD’s BIN Database retrieved a further match for this BIN, as Cecidomyiidae sp. from Bavaria, Germany (accessed 26 Aug. 2023).
Material examined
GERMANY ‒ Bavaria • 1 ♂; Allgäu, Balderschwang, Leiterberg; 47°48′58″ N, 10°08′99″ E; elev. 1290 m; 17 May‒3 Jun. 2017; D. Doczkal and J. Voith leg.; Malaise trap; BOLD DTIII8485-22; ZSM-DIP-42474-C06 • 1 ♂; Weilheim, Pähl, Hartschimmelhof; 47°94′15″ N, 11°18′26″ E; 8 May‒5 Jun. 2020; D. Doczkal and K. Grabow leg.; Malaise trap; fen; ZSM-DIP-42303-D01 • 1 ♂; same data as for preceding; ZSM-DIP-42303-D02 • 1 ♂; same data as for preceding but 47°93′88″ N, 11°18′44″ E; nutrient-poor pasture; ZSM-DIP-42303-F07.
Distribution
Germany (new record); Sweden (Gagné & Jaschhof 2021).
description: Published as part of Jaschhof, Mathias, 2024, New taxa and new records of Winnertziinae and Porricondylinae (Diptera: Cecidomyiidae) from Germany, pp. 1-134 in European Journal of Taxonomy 953 on pages 56-57, DOI: 10.5852/ejt.2024.953.2649, http://zenodo.org/record/13749629
Additional file 9: Figure S2. of Cnidaria: fast, reference-free clustering of raw and assembled genome and transcriptome NGS data
Creators: name: Aflitos, Saulo
name: Severing, Edouard
name: Sanchez-Perez, Gabino
name: Peters, Sander
name: Jong, Hans De
name: Ridder, Dick De
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: Heatmaps of Jaccard distance and phylogenetic trees of 135 samples using 11-mers. Here, 0 (red) means identity between samples while 1 (blue) means no identity. Generally, closely related species show high similarity with closely related species and no similarity with outgroups. This leads to strong clustering inside groups but loose coupling between groups. Trees in the left shows phylogenetic distances while trees in the right ignores the distances, showing the clustering more clearly; trees plotted using iTOL [85]. (PDF 1668Â kb)
Pseudoteratura (Pseudoteratura) kenuan Tan, Gorochov & Wahab 2017
Creators: name: Tan, Ming Kai
name: Wahab, Rodzay Bin Haji Abdul
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Orthoptera
Tettigoniidae
Pseudoteratura
Pseudoteratura kenuan

description: Pseudoteratura (Pseudoteratura) kenuan Tan, Gorochov & Wahab, 2017
(Fig. 4)
http://lsid.speciesfile.org/urn:lsid: Orthoptera.speciesfile.org:TaxonName:499452
Material examined. 1 female (KB.17.98), Brunei Darussalam, Ulu Temburong National Park, Kuala Belalong Field Studies Centre along Ashton Trail, primary ridge dipterocarp forest, N4.54617, E115.15688, 137.8± 5.6 m.a.s.l., under foliage of tree, 28 July 2017, 1834 hours, coll. M. K. Tan (dried pinned, ZRC).
Female description. Similar to male in habitus (Fig. 4A). Tenth abdominal tergite with posterior margin deeply notched in the middle, with lateral lobe triangular (Fig. 4B). Epiproct small and obtusely rounded, with two small basal lobes (Fig. 4B). Cercus slender and cylindrical, apical end narrowed abruptly into an obtuse apex (Fig. 4C). Subgenital plate transverse, wider than long; with posterior margin broadly notched in the middle (Fig. 4D). Ovipositor long with base slightly swollen; straight in middle and apical third before tapering to an acute apex (Fig. 4E). Valves smooth; ventral and dorsal valves equal length, ventral valve more curved towards apex than dorsal valve (Fig. 4E).
Colouration. Similar to male.
Measurement (in mm). BL = 8.2, BWL = 21.8, PL = 3.8, TL = 15.4, HWT = 3.0, HFL = 9.8, HTL = 11.8, OL = 7.9.
Comparison. The female of this species differs from congeners by the posterior of subgenital plate distinctly notched in the middle.
The female subgenital plate differs from congeners with known females: P. bella bella Gorochov, 2008 from Mount Trus Madi, Borneo (oval, with distinct transverse fold and hardly notched apex instead); P. bella lambir Gorochov, 2014 from Lambir Hills, Borneo (oval, with slightly pointed apex instead); P. mima Gorochov, 2014 from Tawau Hills, Borneo (oval with rounded apex instead); P. parallela curup Gorochov, 2014 from Sumatra (with distinct median groove on posterior half instead); P. picta (Karny, 1924) from Java (with rounded apex instead); P. raggei (Bey-Bienko, 1971) from Mount Dulit, Borneo (triangular with acute apex instead); and P. spinea Gorochov 2014 from Sumatra (oval, with slightly pointed apex instead).
Female of P. sundaica (Kästner, 1932) and P. (S.) subtilissima Gorochov, 2008 are unknown.
description: Published as part of Tan, Ming Kai & Wahab, Rodzay Bin Haji Abdul, 2018, New taxa and notes of katydids from the tribe Meconematini (Orthoptera: Meconematinae) from Brunei Darussalam (Part 2), pp. 582-590 in Zootaxa 4407 (4) on pages 587-588, DOI: 10.11646/zootaxa.4407.4.10, http://zenodo.org/record/1221034
New eDNA-based insights for the detection of endemic and endangered Apennine yellow bellied toad (Bombina variegata pachypus) and its pathogenic fungus Batrachochytrium dendrobatidis
Creators: name: Mirone, Enrico
name: Giovacchini, Simone
name: A. Bologna, Marco
name: Bruno, Antonia
name: Caprotti, Luca
name: Di Febbraro, Mirko
name: S. Jamwal, Pushpinder
name: Monaco, Pamela
name: Ramazzotti, Fausto
name: Vignoli, Leonardo
name: Galimberti, Andrea
name: Loy, Anna
Publisher: name: Brill Online
Year: 2024
Subjects: classificationCode: 310399
subject: Ecology not elsewhere classified

description: Amphibian populations are experiencing a global significant decline due to habitat loss, climate change, disease outbreaks and last but not least, interaction with alien species and/or their parasites. The Apennine yellow-bellied toad (Bombina variegata pachypus (Bonaparte, 1838)) is endemic to the Italian Peninsula. This subspecies, like many other amphibians, is declining and is listed as Endangered (EN) in the italian red list (http://www.iucnredlist.org). This study aimed to use an environmental DNA (eDNA)-based approach to detect the occurrence of both B. v. pachypus and its potential threatening pathogen fungus Batrachochytrium dendrobatidis Lee Berger, 1998 (Chytridiomycetes, hereafter Bd), at 20 freshwater sampling sites in Central Italy (i.e., five isolated ponds and six rivers). Here, a new TaqMan-based (qPCR) assay has been developed for eDNA-based detection of B. v. pachypus. Additionally, eDNA-based screening for Bd occurrence was conducted. Two sampling replicates per site were carried out in 2021-2022. For the sampling sites along rivers, we collected six fine-scale and 16 large-scale environmental variables that could affect the detection of eDNA from B. v. pachypus and Bd and therefore the occurrence of these species. eDNA of B. v. pachypus was detected in 12 out of 20 sampling sites, whereas Bd was found at one sample site, co-occurring with B. v. pachypus. Environmental DNA of B. v. pachypus was detected at all but one of the rivers surveyed (i.e., Liri River). Nine out of 12 eDNA positive sites represented new occurrences for this amphibian, most of which (n = 8) were located outside Natura 2000 areas. Positive sites included eight out of 14 running water bodies and four out of six standing water bodies; the latter including a pond in a lowland protected area where B. pachypus was considered extirpated since 1997. The outcomes of this study confirm eDNA as a rapid and cost-effective method for large-scale surveys of both the Apennine yellow-bellied toad and its potentially threatening pathogenic fungus Bd.
Platyrhinus resinosus
Creators: name: Barševskis, Arvīds
name: Cibuļskis, Raimonds
name: Shavrin, Alexey
name: Anichtchenko, Aleksandre
name: Valainis, Uldis
name: Balalaikins, Maksims
name: Vorobjova, Irina
name: Litvinceva, Jeļena
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Anthribidae
Platyrhinus
Platyrhinus resinosus

description: 306. Platyrhinus resinosus (Scopoli, 1763)
– Šedere, ‘Straumēni’, 23.- 26.06.2010., (1, M.Janovska leg.).
description: Published as part of Barševskis, Arvīds, Cibuļskis, Raimonds, Shavrin, Alexey, Anichtchenko, Aleksandre, Valainis, Uldis, Balalaikins, Maksims, Vorobjova, Irina & Litvinceva, Jeļena, 2012, Faunistic Records Of The Beetles (Hexapoda: Coleoptera) In Latvia. 4, pp. 85-117 in Acta Biologica Universitatis Daugavpiliensis 12 (4) on page 116, DOI: 10.5281/zenodo.12647104
ON THE CHOICE OF THE OPTIMAL TEMPORAL SUPPORT FOR AUDIO CLASSIFICATION  WITH PRE-TRAINED EMBEDDINGS
Creators: Aurian Quelennec
Michel Olvera
Geoffroy Peeters
Slim Essid
Publisher: name: IEEE Signal Processing Society
Year: 2024

description: Current state-of-the-art audio analysis systems rely on pre-trained embedding models, often used off-the-shelf as (frozen) feature extractors. Choosing the best one for a set of tasks is the subject of many recent publications. However, one aspect often overlooked in these works is the influence of the duration of audio input considered to extract an embedding, which we refer to as Temporal Support (TS). In this work, we study the influence of the TS for well-established or emerging pre-trained embeddings, chosen to represent different types of architectures and learning paradigms. We conduct this evaluation using both musical instrument and environmental sound datasets, namely OpenMIC, TAU Urban Acoustic Scenes 2020 Mobile, and ESC-50. We especially highlight that Audio Spectrogram Transformer-based systems (PaSST and BEATs) remain effective with smaller TS, which therefore allows for a drastic reduction in memory and computational cost. Moreover, we show that by choosing the optimal TS we reach competitive results across all tasks. In particular, we improve the state-of-the-art results on OpenMIC, using BEATs and PaSST without any fine-tuning.
Pulchroteratura huiqing Tan, Gorochov & Wahab 2017
Creators: name: Tan, Ming Kai
name: Wahab, Rodzay Bin Haji Abdul
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Orthoptera
Tettigoniidae
Pulchroteratura
Pulchroteratura huiqing

description: Pulchroteratura huiqing Tan, Gorochov & Wahab, 2017
(Fig. 5)
http://lsid.speciesfile.org/urn:lsid: Orthoptera.speciesfile.org:TaxonName:499451
Material examined. 1 female (KB.17.88), Brunei Darussalam, Ulu Temburong National Park, Kuala Belalong Field Studies Centre along Ashton Trail, primary ridge dipterocarp forest, N4.54636, E115.15682, 136.8± 7.1 m.a.s.l., under foliage of tree, 27 July 2017, 1850 hours, coll. M. K. Tan; 1 female (KB.17.101), same locality, near Sungei Mata Ikan, N4.54697, E115.15701, 133.0± 7.9 m.a.s.l., under foliage of tree, 28 July 2017, 1855 hours, coll. M. K. Tan (all dried pinned, ZRC).
Female description. Similar to male in habitus (Fig. 5A). Tenth abdominal tergite with posterior margin truncated, in the middle produced into a tongue-shaped flat process with obtuse apex (Fig. 5B). Epiproct small and rounded, concealed by the flat process of tenth abdominal tergite (Fig. 5B). Cercus longer and slender, cylindrical before tapering to an acute apex. Subgenital plate small and very short, transverse, much wider than long; with posterior margin notched in the middle (Fig. 5C). Ovipositor fairly stout, with base slightly swollen, wider than in the middle; with middle third narrow, dorsal and ventral margins parallel; with apical third wider than middle third (Fig. 5D). Base of ovipositor with a rectangular lateral plate (lp) on the dorsal valve (when viewed in profile), longer than tall, slightly swollen (Fig. 5D); with a small dorso-lateral lamellate lobe (dll) on each side above the basal margin of the lateral plate, pointing dorsad with apex obtuse (Fig. 5D); with a small ventro-lateral triangular lamellate lobe (vll) extending laterally outwards (when viewed ventrally) (Fig. 5C). Valves of ovipositor smooth (ventral valve feebly denticulated at the apex), with margins distinctly sclerotized near the apex (Fig. 5D); ventral valve shorter than dorsal valve, forming a small and stout hook at the apex; apex of ventral hook truncated; dorsal valve tapers to an acute apex (Fig. 5E).
Colouration. Similar to male.
Measurement (in mm). BL = 8.3, BWL = 19.9, PL = 3.0, TL = 17.0, HWT = 0.0, HFL = 11.1, HTL = 14.1, OL = 5.4.
description: Published as part of Tan, Ming Kai & Wahab, Rodzay Bin Haji Abdul, 2018, New taxa and notes of katydids from the tribe Meconematini (Orthoptera: Meconematinae) from Brunei Darussalam (Part 2), pp. 582-590 in Zootaxa 4407 (4) on pages 589-590, DOI: 10.11646/zootaxa.4407.4.10, http://zenodo.org/record/1221034