cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 13: of DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases
Creators: name: Symen Ligthart
name: Marzi, Carola
name: Aslibekyan, Stella
name: Mendelson, Michael
name: Conneely, Karen
name: Tanaka, Toshiko
name: Colicino, Elena
name: Waite, Lindsay
name: Joehanes, Roby
name: Weihua Guan
name: Brody, Jennifer
name: Elks, Cathy
name: Marioni, Riccardo
name: Jhun, Min
name: Golareh Agha
name: Bressler, Jan
name: Cavin Ward-Caviness
name: Chen, Brian
name: Tianxiao Huan
name: Bakulski, Kelly
name: Salfati, Elias
name: Fiorito, Giovanni
name: Wahl, Simone
name: Schramm, Katharina
name: Sha, Jin
name: Hernandez, Dena
name: Just, Allan
name: Smith, Jennifer
name: Sotoodehnia, Nona
name: Pilling, Luke
name: Pankow, James
name: Tsao, Phil
name: Chunyu Liu
name: Zhao, Wei
name: Guarrera, Simonetta
name: Michopoulos, Vasiliki
name: Smith, Alicia
name: Peters, Marjolein
name: Melzer, David
name: Pantel Vokonas
name: Fornage, Myriam
name: Prokisch, Holger
name: Bis, Joshua
name: Chu, Audrey
name: Herder, Christian
name: Grallert, Harald
name: Yao, Chen
name: Shah, Sonia
name: McRae, Allan
name: Honghuang Lin
name: Horvath, Steve
name: Fallin, Daniele
name: Hofman, Albert
name: Wareham, Nicholas
name: Wiggins, Kerri
name: Feinberg, Andrew
name: Starr, John
name: Visscher, Peter
name: Murabito, Joanne
name: Kardia, Sharon
name: Absher, Devin
name: Binder, Elisabeth
name: Singleton, Andrew
name: Bandinelli, Stefania
name: Peters, Annette
name: Waldenberger, Melanie
name: Matullo, Giuseppe
name: Schwartz, Joel
name: Demerath, Ellen
name: AndrĂŠ Uitterlinden
name: Meurs, Joyce Van
name: Franco, Oscar
name: Yii-Der Chen
name: Levy, Daniel
name: Turner, Stephen
name: Deary, Ian
name: Ressler, Kerry
name: JosĂŠe Dupuis
name: Ferrucci, Luigi
name: Ong, Ken
name: Themistocles Assimes
name: Boerwinkle, Eric
name: Koenig, Wolfgang
name: Arnett, Donna
name: Baccarelli, Andrea
name: Emelia Benjamin
name: Dehghan, Abbas
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Supplemental text. (PDF 1005 kb)
Facteurs de réussite entrepreneuriale des entrepreneurs Diplômés des Universités au Cameroun : cas de Yaoundé
Creators: name: GODOM, André
Publisher: name: Zenodo
Year: 2024
Subjects: Réussite entrepreneuriale ; Entrepreneurs ; Diplômés des Universités ; Cameroun ; Yaoundé.

description: Le présent article se propose d’étudier les facteurs qui déterminent la réussite entrepreneuriale des entrepreneurs Diplômés des Universités en contexte camerounais. Pour ce faire, nous avons mobilisé la méthode d’analyse statistique bivariée sur des données primaires collectées auprès de 204 entrepreneurs à Yaoundé. Les résultats de cette étude ont révélé que certains facteurs caractéristiques de l’entrepreneur et de l’environnement de son entreprise agissent de manière non-négligeable au succès entrepreneurial. Il s’agit : de l’expérience de l’entrepreneur, de sa résilience, de la survie de l’entreprise et de la fréquentation du milieu d’installation de l’entreprise.
PUDD: Towards Robust Multi-modal Prototype-based Deepfake Detection
Creators: name: Pellcier, Alvaro Lopez
name: Li, Yi
name: Angelov, Plamen
Publisher: name: arXiv
Year: 2024
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: Deepfake techniques generate highly realistic data, making it challenging for humans to discern between actual and artificially generated images. Recent advancements in deep learning-based deepfake detection methods, particularly with diffusion models, have shown remarkable progress. However, there is a growing demand for real-world applications to detect unseen individuals, deepfake techniques, and scenarios. To address this limitation, we propose a Prototype-based Unified Framework for Deepfake Detection (PUDD). PUDD offers a detection system based on similarity, comparing input data against known prototypes for video classification and identifying potential deepfakes or previously unseen classes by analyzing drops in similarity. Our extensive experiments reveal three key findings: (1) PUDD achieves an accuracy of 95.1% on Celeb-DF, outperforming state-of-the-art deepfake detection methods; (2) PUDD leverages image classification as the upstream task during training, demonstrating promising performance in both image classification and deepfake detection tasks during inference; (3) PUDD requires only 2.7 seconds for retraining on new data and emits 10$^{5}$ times less carbon compared to the state-of-the-art model, making it significantly more environmentally friendly.
description: CVPR2024
Aboriginal participation in mineral development : environmental assessment and impact and benefit agreements
Creators: name: Fidler, Courtney Riley
Publisher: name: University of British Columbia
Year: 2008

description: In a mineral development scenario, Aboriginal groups rely heavily on Environmental Assessment (EA) and Impact and Benefit Agreements (IBAs) to address their interests and concerns. While EA and IBAs are separate processes – EA is legislated and informed by the Crown, and IBAs operate in the realm of private contract law – together, the two are ostensibly part of a parallel process that connect the Aboriginal group(s), Government and the mining proponent. Indisputably, IBAs support a more inclusive development based on consultation, partnership and participation. IBAs and EA have the potential to enhance Aboriginal involvement in mineral development and positively influence the design and planning of the mine. This thesis examines the Tahltan Nation’s involvement and participation in the Galore Creek Project in British Columbia, and demonstrates the challenges and opportunities that arose during the EA and IBA process. It uses key informant interviews to gain multiple perspectives – from the proponent, Tahltan, and Government, to understand how the Tahltan utilized the EA and IBA to participate in the mineral development.
Additional file 2: of Transcriptome analysis reveals the effects of sugar metabolism and auxin and cytokinin signaling pathways on root growth and development of grafted apple
Creators: name: Guofang Li
name: Juanjuan Ma
name: Tan, Ming
name: Jiangping Mao
name: An, Na
name: Guangli Sha
name: Zhang, Dong
name: Caiping Zhao
name: Mingyu Han
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: Clusters of annotated GO terms in the biological process category enriched in Up-regulated (A) and Down-regulated (B) between roots of grafted WT and MB apple. (DOC 2423Â kb)
Mycotretus dichrous Kirsch 1876
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycotretus
Mycotretus dichrous

description: 126. Mycotretus dichrous Kirsch, 1876
Mycotretus dichrous Kirsch, 1876: 100. Type locality: “ Peru ” [based on type label = “Pozuzu” (= locality of Pozuzo), in the department of Pasco, Peru].
Mycotretus dichrous – Gemminger & Harold 1876: 3692. — Kuhnt 1909: 71; 1911: 49. — Mader 1942: 172; 1951: 212. — Blackwelder 1945: 466. — Alvarenga 1994: 23. — McHugh & Chaboo 2015: 278.
Primary type
Lectotype, here designated (Fig. 22F)
PERU • “ Pozuzu M. Kirsch [printed] \ Typus [printed] \ Mycotretus dichrous Kirsch Typus! [handwritten] \ HOLOTYPUS [red label, printed] \ Staatl. Museum für Tierkunde Dresden [printed]”; SNSD.
Other specimens examined
BRAZIL • 1 ♂ (dissected); “Coleção M. Alvarenga [printed] \ SINOP 12º31’S, 55º37’W, BR 163 km 500 a 600 Mato Grosso, BRASIL 350 m [printed] X. 1975 [handwritten] Roppa & Alvarenga col. [printed] \ Mycotretus dichrous Kirsch, 1876 [handwritten] M. Alvarenga det. [printed] 1984 [handwritten] \ PMMD [handwritten]”; MNRJ.
Distribution
Peru, Central-West and North Brazil.
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on page 105, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
Additional file 11: Table S10. of DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases
Creators: name: Symen Ligthart
name: Marzi, Carola
name: Aslibekyan, Stella
name: Mendelson, Michael
name: Conneely, Karen
name: Tanaka, Toshiko
name: Colicino, Elena
name: Waite, Lindsay
name: Joehanes, Roby
name: Weihua Guan
name: Brody, Jennifer
name: Elks, Cathy
name: Marioni, Riccardo
name: Jhun, Min
name: Golareh Agha
name: Bressler, Jan
name: Cavin Ward-Caviness
name: Chen, Brian
name: Tianxiao Huan
name: Bakulski, Kelly
name: Salfati, Elias
name: Fiorito, Giovanni
name: Wahl, Simone
name: Schramm, Katharina
name: Sha, Jin
name: Hernandez, Dena
name: Just, Allan
name: Smith, Jennifer
name: Sotoodehnia, Nona
name: Pilling, Luke
name: Pankow, James
name: Tsao, Phil
name: Chunyu Liu
name: Zhao, Wei
name: Guarrera, Simonetta
name: Michopoulos, Vasiliki
name: Smith, Alicia
name: Peters, Marjolein
name: Melzer, David
name: Pantel Vokonas
name: Fornage, Myriam
name: Prokisch, Holger
name: Bis, Joshua
name: Chu, Audrey
name: Herder, Christian
name: Grallert, Harald
name: Yao, Chen
name: Shah, Sonia
name: McRae, Allan
name: Honghuang Lin
name: Horvath, Steve
name: Fallin, Daniele
name: Hofman, Albert
name: Wareham, Nicholas
name: Wiggins, Kerri
name: Feinberg, Andrew
name: Starr, John
name: Visscher, Peter
name: Murabito, Joanne
name: Kardia, Sharon
name: Absher, Devin
name: Binder, Elisabeth
name: Singleton, Andrew
name: Bandinelli, Stefania
name: Peters, Annette
name: Waldenberger, Melanie
name: Matullo, Giuseppe
name: Schwartz, Joel
name: Demerath, Ellen
name: AndrĂŠ Uitterlinden
name: Meurs, Joyce Van
name: Franco, Oscar
name: Yii-Der Chen
name: Levy, Daniel
name: Turner, Stephen
name: Deary, Ian
name: Ressler, Kerry
name: JosĂŠe Dupuis
name: Ferrucci, Luigi
name: Ong, Ken
name: Themistocles Assimes
name: Boerwinkle, Eric
name: Koenig, Wolfgang
name: Arnett, Donna
name: Baccarelli, Andrea
name: Emelia Benjamin
name: Dehghan, Abbas
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Marine Biology
subject: Cancer

description: GWAS enrichment analysis. (PDF 335 kb)
Additional file 6: of Transcriptome analysis reveals the effects of sugar metabolism and auxin and cytokinin signaling pathways on root growth and development of grafted apple
Creators: name: Guofang Li
name: Juanjuan Ma
name: Tan, Ming
name: Jiangping Mao
name: An, Na
name: Guangli Sha
name: Zhang, Dong
name: Caiping Zhao
name: Mingyu Han
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Plant Biology

description: Selected differentially expressed genes related to cell division, differentiation and growth. (DOC 39Â kb)
Mycotretus pelliciens Kirsch 1876
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycotretus
Mycotretus pelliciens

description: 127. Mycotretus pelliciens Kirsch, 1876
Mycotretus pelliciens Kirsch, 1876: 100. Type locality: “ Peru ” [based on type label = “Pozuzu” (= locality of Pozuzo), in the department of Pasco, Peru].
Mycotretus pelliciens – Gemminger & Harold 1876: 3694. — Kuhnt 1909: 76; 1911: 52. — Mader 1942: 174; 1951: 219. — Blackwelder 1945: 467. — Alvarenga 1994: 32. — McHugh & Chaboo 2015: 278.
Primary type
Lectotype, here designated (Fig. 23A)
PERU • “ Pozuzu, M. Kirsch [printed] \ Typus [red label, printed] \ Mycotretus pelliciens Kirsch Typus [handwritten] \ HOLOTYPUS [red label, printed] \ Staatl. Museum für Tierkunde Dresden [printed]”; SNSD.
Remarks
New junior synonym of M. opalescens Crotch, 1876 (Fig. 8F, see above).
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on page 106, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
Additional file 1: of Overexpression of MALT1-A20-NF-ÎşB in adult B-cell acute lymphoblastic leukemia
Creators: name: Xu, Yi
name: Junyan Hu
name: Wang, Xu
name: Xuan, Li
name: Lai, Jing
name: Xu, Ling
name: Shaohua Chen
name: Lijian Yang
name: Gengxin Luo
name: Kanger Zhu
name: Xiuli Wu
name: Yangqiu Li
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Table S1. The correlation between A20 expression levels and WBC counts.
Robust and effective ab initio molecular dynamics simulations on the GPU cloud infrastructure using the Schrödinger Materials Science Suite
Creators: name: Fonari, Alexandr
name: Agarwal, Garvit
name: Tiwari, Subodh C.
name: Brock, Casey N.
name: Gavartin, Jacob
name: Halls, Mathew D.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Ab initio Born-Oppenheimer molecular dynamics (AIMD) is a valuable method for simulating physico-chemical processes of complex systems, including reactive systems, and for training machine learning models and force fields. Speed and stability issues on traditional hardware preclude routine AIMD simulations for larger systems and longer timescales. We postulate that any practically useful AIMD simulation must generate a trajectory of a minimum 1000 MD steps a day on a moderate cloud resource. In this work, we implement a computing workflow that enables routine calculations at this throughput and demonstrate results for several non-trivial atomistic dynamical systems. In particular, we have employed the GPU implementation of the Quantum ESPRESSO code which we will show increases AIMD productivity compared to the CPU version. In order to take advantage of transient servers (which are more cost and energy effective compared to the stable servers), we have implemented automatic restart/continuation of the AIMD runs within the Schrödinger Materials Science Suite. Finally, to reduce simulation size and thus reduce compute time when modeling surfaces, we have implemented a wall potential constraint. Our benchmarks using several reactive systems (lithium anode surface/solvent interface, hydrogen diffusion in an iron grain boundary) show a significant speed up when running on a GPU-enabled transient server using our updated implementation.
Platina Jiang & Wang & Liao & Al-Farraj & Warren & Hu 2024
Creators: name: Jiang, Limin
name: Wang, Congcong
name: Liao, Lijian
name: Al-Farraj, Saleh A.
name: Warren, Alan
name: Hu, Xiaozhong
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Chromista
Ciliophora
Prostomatea
Prostomatida
Apsiktratidae
Platina

description: Genus Platina gen. nov.
Zoobank registration: urn:lsid:zoobank.org:act: 1601373F-0BB8-4316-9A76-A10BF15BB6BD
Diagnosis: Body flattened dorsoventrally; caudal cilium and glabrous area present; ectoplasmic alveolar layer conspicuous; somatic kineties generally forming transverse rows; perioral kineties composed of several transverse rings; circumoral kinety incomplete.
Etymology: The genus name Platina (platy -) refers to the flat body, a main distinguishing feature of this genus. Feminine gender.
Type species: Platina marina gen. nov., sp. nov.
description: Published as part of Jiang, Limin, Wang, Congcong, Liao, Lijian, Al-Farraj, Saleh A., Warren, Alan & Hu, Xiaozhong, 2024, Re-evaluation of the systematic position of the order Prostomatida (Protista: Ciliophora), with the establishment of two new genera and two new species, pp. 849-864 in Zoological Journal of the Linnean Society 200 (4) on page 851, DOI: 10.1093/zoolinnean/zlad116, http://zenodo.org/record/11241025
Mycomystes peruvianus
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycomystes
Mycomystes peruvianus

description: Mycomystes peruvianus (Kirsch, 1876)
Mycophtorus peruvianus Kirsch, 1876: 101–102. Type locality: “ Peru ” [based on type label = “Pozuzu” (= locality of Pozuzo), in the department of Pasco, Peru].
Mycophtorus peruvianus – Gemminger & Harold 1876: 3695. — Kuhnt 1909: 89; 1911: 66. — Mader 1942: 176; 1951: 224. — Blackwelder 1945: 468. — Alvarenga 1994: 41. — McHugh & Chaboo 2015: 278.
Mycotretus peruvianus – Skelley & Powell 2018: 311. — Pecci-Maddalena & Lopes-Andrade 2020: 579
Mycomystes peruvianus – Pecci-Maddalena et al. 2021b: 3080.
Primary type
Lectotype, here designated (Fig. 23B)
PERU • “ Pozuzu, M. Kirsch [pale green paper] / Typus [red paper] / Mycophthorus peruvianus Kirsch Typus! [white paper, handwritten] / Staatl. Museum für Tierkunde Dresden [white paper] / HOLOTYPUS [red label] / Mycotretus peruvianus (Kirsch), det. P. Skelley 2012 [white paper]”; SNSD (apud Skelley & Powell 2018).
Distribution
Peru (Alvarenga 1994; Skelley & Powell 2018).
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on page 106, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
Additional file 10: of Comparative transcript profiling of resistant and susceptible peanut post-harvest seeds in response to aflatoxin production by Aspergillus flavus
Creators: name: Houmiao Wang
name: Lei, Yong
name: Liyun Wan
name: Liying Yan
name: Jianwei Lv
name: Xiaofeng Dai
name: Xiaoping Ren
name: Guo, Wei
name: Huifang Jiang
name: Boshou Liao
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Marine Biology

description: Comparison analysis of differentially expressed genes. (DOCX 16 kb)
Mycotretus puncticeps Kirsch 1865
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycotretus
Mycotretus puncticeps

description: 128. Mycotretus puncticeps Kirsch, 1865
Mycotretus puncticeps Kirsch, 1865: 97. Type locality: “ Bogotà ” [= Bogotá, Colombia].
Mycotretus puncticeps – Crotch 1876: 454. — Gemminger & Harold 1876: 3694. — Kuhnt 1909: 76; 1911: 52. — Deelder 1942: 89. — Blackwelder 1945: 467. — Alvarenga 1994: 33.
Primary type
Lectotype, here designated (Fig. 23C)
COLOMBIA • “ Bogota, Coll. Kirsch. [printed] \ Typus [red label, printed] \ SYNTYPUS [red label, printed] \ Staatl. Museum für Tierkunde Dresden [printed]”; SNSD.
Other specimens examined
ECUADOR • 1 ♀ (dissected); “Coleção M.Alvarenga [printed] \ Pichilinge, Quevedo, Los Rios, Ecuador, II. 1977, A. Martinez [handwritten] \ Mycotretus puncticeps Kirsch, 1865 [handwritten] M. Alvarenga det. [printed] 1984 [handwritten]”; MNRJ.
Distribution
Colombia, Ecuador.
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on pages 106-107, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
Additional file 1: Table S1. of Comparative analysis of gene expression profiles in normal hip human cartilage and cartilage from patients with necrosis of the femoral head
Creators: name: Ruiyu Liu
name: Liu, Qi
name: Kunzheng Wang
name: Xiaoqian Dang
name: Zhang, Feng
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 60506 Virology

description: RNA concentrations of study samples. (DOCX 27 kb)
Processing terror : an investigation into the immediate and short-term psychological effects of a terrorist attack
Creators: name: Jhangiani, Rajiv Sunil
Publisher: name: University of British Columbia
Year: 2008

description: In the years since the 9/11 attacks the incidence of terrorism has been on the rise. At the same time, news media coverage of major terrorist attacks has reached epic proportions, greatly expanding the number of individuals psychologically affected by terrorism. The goal of this dissertation is to better understand how individuals cope with terrorism experienced at a distance. Specifically, this investigation focuses on the impact of stress on integrative complexity (IC; a measure of cognitive processing; Suedfeld, Tetlock, & Streufert, 1992) during and shortly after a major terrorist event. Taken together, the findings from the three studies reported in this dissertation provide several insights into this process. Study 1 replicates and extends results from an earlier study of television newscasters reporting live on 9/11 (Jhangiani & Suedfeld, 2005), in the context of the 2005 London bombings and the medium of radio. In doing so, it provides the first empirical evidence outside of the research laboratory for the curvilinear relationship between stress and IC. Specifically, during the early stages of reports concerning the London bombings, a positive relationship is found between negative emotion and IC. However, once the nature and extent of the event become clearer, increases in negative emotion are related to decreases in IC (the disruptive stress hypothesis). Study 2 replicates this curvilinear relationship in the short-term reactions of two prominent political leaders to 9/11 and the 2005 London bombings. For one of these political leaders, the magnitude of his psychological reaction is moderated by the psychological distance between him and the victims of the attacks. Finally, Study 3 finds that two key personality variables, neuroticism and empathy, play important roles in determining the magnitude of the short-term psychological reactions to 9/11 of more than 250 students from Canada and the United States. This finding is particularly true for those students who were psychologically closer to the victims of the attacks. Implications, strengths and limitations of this research, and possible future directions are discussed.
Parametacystis Jiang & Wang & Liao & Al-Farraj & Warren & Hu 2024
Creators: name: Jiang, Limin
name: Wang, Congcong
name: Liao, Lijian
name: Al-Farraj, Saleh A.
name: Warren, Alan
name: Hu, Xiaozhong
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Chromista
Ciliophora
Prostomatea
Prostomatida
Apsiktratidae
Parametacystis

description: Genus Parametacystis gen. nov.
Zoobank registration: urn:lsid:zoobank.org:act: 976EB549-956F-4415-82D3-D6686D77BE2E
Diagnosis: Body with transverse annulations; protruding caudal vacuole present; contractile vacuole absent; oral ciliature simple, composed only of an incomplete circumoral kinety; somatic kinetids generally forming transverse rows; perioral kineties composed of several transverse rings.
Etymology: The genus name Parametacystis is a composite of the Greek adjective para- (beside) and the genus name Metacystis, alluding to the similarity of these two genera. Feminine gender.
Type species: Parametacystis pulchra gen. nov., sp. nov.
description: Published as part of Jiang, Limin, Wang, Congcong, Liao, Lijian, Al-Farraj, Saleh A., Warren, Alan & Hu, Xiaozhong, 2024, Re-evaluation of the systematic position of the order Prostomatida (Protista: Ciliophora), with the establishment of two new genera and two new species, pp. 849-864 in Zoological Journal of the Linnean Society 200 (4) on page 854, DOI: 10.1093/zoolinnean/zlad116, http://zenodo.org/record/11241025
Mycotretus suturalis Kirsch 1876
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycotretus
Mycotretus suturalis

description: 129. Mycotretus suturalis Kirsch, 1876
Mycotretus suturalis Kirsch, 1876: 99. Type locality: “ Peru ” [based on type label = “Pozuzu” (= locality of Pozuzo), in the department of Pasco, Peru].
Mycotretus suturalis – Gemminger & Harold 1876: 3695. — Kuhnt 1909: 72; 1911: 54. — Mader 1942: 172; 1951: 213. — Blackwelder 1945: 467. — Alvarenga 1994: 36. — McHugh & Chaboo 2015: 278.
Primary type
Lectotype, here designated (Fig. 23D)
PERU • “ Pozuzu M. Kirsch [printed] \ Typus [red label, printed] \ Mycotretus suturalis Kirsch Typus [handwritten] \ HOLOTYPUS [red label, printed] \ Staatl. Museum für Tierkunde Dresden [printed]”; SNSD.
Other specimens examined
BRAZIL • 1 ♀ (dissected); “Coleção M. Alvarenga [printed] \ Homeotipo [printed] \ Comparado com tipo [printed] Mycotretus suturalis Kirsch, 1876 [handwritten] M. Alvarenga det. 1971 [printed] \ BENJAMIN CONSTANT, Amazonas BRASIL [printed], IX. 1955 [handwritten], I. C. Lima [printed] \ 1791 [printed] \ DZUP 132797 [printed]”; DZUP • 1 ♀ (dissected); “Coleção M. Alvarenga [printed] \ JATAI, Goiás Brasil, X 1972, F M. Oliveira [printed] \ DZUP 127781 [printed]”; DZUP.
Distribution
Peru, Bolivia, Central-West and North Brazil.
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on page 107, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
Additional file 5: of Comparative transcript profiling of resistant and susceptible peanut post-harvest seeds in response to aflatoxin production by Aspergillus flavus
Creators: name: Houmiao Wang
name: Lei, Yong
name: Liyun Wan
name: Liying Yan
name: Jianwei Lv
name: Xiaofeng Dai
name: Xiaoping Ren
name: Guo, Wei
name: Huifang Jiang
name: Boshou Liao
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Plant Biology
subject: 60506 Virology

description: Distribution of unigenes expression in each library. NEGs: the number of expressed unigenes in each library. NSEGs: the number of specifically expressed unigenes in each library. (DOCX 17 kb)
Mycotretus bicoloratus Kuhnt 1911
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycotretus
Mycotretus bicoloratus

description: 130. Mycotretus bicoloratus Kuhnt, 1911
Mycotretus bicolor Kirsch, 1976: 101 [nec Taschenberg 1870]. Type locality: “ Peru ” [based on type label = “Pozuzu” (= locality of Pozuzo), in the department of Pasco, Peru].
Mycotretus bicoloratus Kuhnt, 1911: 48 [replacement name].
Mycotretus bicoloratus – Mader 1942: 172; 1951: 211. — Blackwelder 1945: 465. — Alvarenga 1994: 21. — McHugh & Chaboo 2015: 278.
Mycotretus bicolor – Alvarenga 1994: 21.
Primary type
Holotype (Fig. 23E)
PERU • “ Pozuzu M. Kirsch [printed] \ Mycotretus? [handwritten] \ HOLOTYPUS [red label, printed] bicolor Kirsch [handwritten] \ Staatl. Museum für Tierkunde Dresden [printed]”; SNSD.
Distribution
Peru.
Remarks
Kuhnt (1911) proposed the new specific name Mycotretus bicoloratus to replace Mycotretus bicolor Kirsch, 1876. Taschenberg (1870) described a species called M. bicolor; therefore, the name proposed by Kirsch (1876) is a junior homonym.
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on pages 107-109, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
Search string
Creators: name: Mohapatra, Sidhiprada
name: Maiya, G Arun
name: U Nayak, Ullas
name: Benny, Leno
name: Watson, Joanne
name: Kinjawadekar, Amit
name: Rama Devi, Nandineni
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 339999
subject: Other built environment and design not elsewhere classified

description: Search string for the Scoping Review
MOESM1 of Patterns and determinants of malaria risk in urban and peri-urban areas of Blantyre, Malawi
Creators: name: Mathanga, Don
name: Atupele Tembo
name: Themba Mzilahowa
name: Bauleni, Andy
name: Kondwani Mtimaukenena
name: Taylor, Terrie
name: Valim, Clarissa
name: Walker, Edward
name: Wilson, Mark
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Computational Biology

description: Additional file 1: Table S1. Weights (loadings) of household characteristics in each principal component.
Molecular Diffusion Models with Virtual Receptors
Creators: name: Halfon, Matan
name: Rozenberg, Eyal
name: Rivlin, Ehud
name: Freedman, Daniel
Publisher: name: arXiv
Year: 2024
Subjects: subject: Machine Learning (cs.LG)
subject: Biomolecules (q-bio.BM)
subject: FOS: Computer and information sciences
subject: FOS: Biological sciences

description: Machine learning approaches to Structure-Based Drug Design (SBDD) have proven quite fertile over the last few years. In particular, diffusion-based approaches to SBDD have shown great promise. We present a technique which expands on this diffusion approach in two crucial ways. First, we address the size disparity between the drug molecule and the target/receptor, which makes learning more challenging and inference slower. We do so through the notion of a Virtual Receptor, which is a compressed version of the receptor; it is learned so as to preserve key aspects of the structural information of the original receptor, while respecting the relevant group equivariance. Second, we incorporate a protein language embedding used originally in the context of protein folding. We experimentally demonstrate the contributions of both the virtual receptors and the protein embeddings: in practice, they lead to both better performance, as well as significantly faster computations.
Mycotretus derasofasciatus Kuhnt 1910
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycotretus
Mycotretus derasofasciatus

description: 131. Mycotretus derasofasciatus Kuhnt, 1910
Mycotretus derasofasciatus Kuhnt, 1910: 237. Type locality: “Chanchamayo, Peru ”.
Mycotretus derasofasciatus – Kuhnt 1911: 49. — Mader 1942: 175, 199; 1951: 219, 222. — Blackwelder 1945: 466. — Guérin 1949a: 236. — Alvarenga 1994: 23. — McHugh & Chaboo 2015: 278.
Primary type
Lectotype, here designated (Fig. 23F)
PERU • “Coll. Thieme [printed] \ Chanchamayo, Ober-Peru [printed] \ Mycotretus derasofasciatus Kuhnt. [handwritten] det. P. Kuhnt [printed] \ Type [red label, printed] \ Chanchamayo [handwritten] \ LECTOTYPE Mycotretus derasofasciatus Kuhnt, 1910 det. I. Pecci-Maddalena 2017 [red label, printed]”; MFN.
Remarks
New junior synonym of M. scitulus Lacordaire, 1842 (Fig. 36E, see below).
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on page 109, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
Mycotretus discipennis subsp. discipennis Kuhnt 1910
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycotretus
Mycotretus discipennis
Mycotretus discipennis discipennis kuhnt, 1910

description: 132. Mycotretus discipennis discipennis Kuhnt, 1910
Mycotretus discipennis Kuhnt, 1910: 240. Type locality: “St. Catharina” [state of Santa Catarina, South Brazil].
Mycotretus discipennis – Kuhnt 1911: 49. — Blackwelder 1945: 466. — Alvarenga 1994: 24.
Primary type
Lectotype, here designated (Fig. 24A)
BRAZIL • “104379 [printed] \ Colonia Hansa, St Catharina, H.Rolle, Berlin SW1L [printed] \ Mycotretus discipennis Kuhnt [handwritten] \ Typus [printed] \ Type [red label, printed] \ LECTOTYPE Mycotretus discipennis Kuhnt, 1910, det. I. Pecci-Maddalena 2017 [red label, printed]”; MFN.
Remarks
New junior synonym of M. deyrollei Crotch, 1876 (Fig. 6A, see above).
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on page 109, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
Additional file 1: Table S1. of Transcriptome analysis of dormant tomonts of the marine fish ectoparasitic ciliate Cryptocaryon irritansÂ under lowÂ temperature
Creators: name: Yin, Fei
name: Sun, Peng
name: Jiteng Wang
name: Quanxin Gao
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Science Policy

description: C. irritans tomont transcriptome expression profile under low temperature. (DOCX 15 kb)
[Próximamente vea usted a Carlos Bracho en la obra Las Monjas]
Creators: name: Héctor, Mendoza
name: Mendoza, Héctor
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2024
Subjects: Théâtre
''Les Nonnes''

description: Promotion pour la pièce ''Las Monjas'' (''Les Nonnes'') d’Eduardo Manet, mise en scène par Héctor Mendoza et représentée au Teatro Reforma de Mexico (Mexique).
description: Promoción de la obra “Las Monjas” de Eduardo Manet, dirigida por Héctor Mendoza y representada en el Teatro Reforma de Ciudad de México (México).
description: Notes : Le document est composé d'un programme, collé au recto, et d’une coupure de presse et d’un imprimé promotionnel, collés au verso, sur un feuillet vierge au format A4. Les éléments ont été indexés séparément. Le document est classé dans le fonds d’archives à la cote EM-E1-1971-10-00c. Annotation manuscrite au dos de l’imprimé : ''Estos son preventivos de mano para el espectáculo que se da en estos momentos en el teatro donde estrenemos nosotros''.
description: Source: EM-C1-1-1971-10-00a
description: Source: Localisation de la ressource : Centre de Recherches Latino-Américaines (CRLA–Archivos, ITEM UMR8132). MSHS - Bât. A5, 1er étage 5 rue Théodore Lefebvre - TSA21103. 86073 Poitiers cedex 9.
description: Relation: EM-C1-1-1971-10-21
description: Relation: EM-E1-1971-10-00c
Additional file 2: Table S2. of Transcriptome analysis of dormant tomonts of the marine fish ectoparasitic ciliate Cryptocaryon irritansÂ under lowÂ temperature
Creators: name: Yin, Fei
name: Sun, Peng
name: Jiteng Wang
name: Quanxin Gao
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: KEGG pathway enrichment analysis of the differently expressed genes. (DOCX 40 kb)
Additional file 3: Table S1. of An La-related protein controls cell cycle arrest by nuclear retrograde transport of tRNAs during diapause formation in Artemia
Creators: name: Dian-Fu Chen
name: Lin, Cheng
name: Wang, Hong-Liang
name: Zhang, Li
name: Dai, Li
name: Jia, Sheng-Nan
name: Zhou, Rong
name: Li, Ran
name: Yang, Jin-Shu
name: Yang, Fan
name: Clegg, James
name: Nagasawa, Hiromichi
name: Yang, Wei-Jun
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Primes used in this study. Table S2. Sequences obtained in this study. Table S3. Oligonucleotides used in this study. (DOC 74 kb)
Mycotretus discipennis subsp. conductus Kuhnt 1910
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycotretus
Mycotretus discipennis
Mycotretus discipennis conductus kuhnt, 1910

description: 133. Mycotretus discipennis conductus Kuhnt, 1910
Mycotretus discipennis conductus Kuhnt, 1910: 240 [as a variety]. Type locality: “St. Catharina (Colonia Hansa)” [in the state of Santa Catarina, South Brazil].
Mycotretus discipennis conductus – Kuhnt 1911: 49. — Blackwelder 1945: 466. — Alvarenga 1994: 24.
Primary type
Lectotype, here designated (Fig. 24B).
BRAZIL • “ Colonia Hansa, St Catharina, H.Rolle, Berlin SW1L [printed] \ 104381 [printed] \ Typus [printed] \ Mycotretus discipennis Kuhnt var. conductus [handwritten] \ Type [red label, printed] \ LECTOTYPE Mycotretus discipennis conductus Kuhnt, 1910, det. I. Pecci-Maddalena 2017 [red label, printed]”; MFN.
Remarks
New junior synonym of M. deyrollei Crotch, 1876 (Fig. 6A, see above).
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on pages 109-110, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
White dwarf constraints on geological processes at the population level
Creators: name: Buchan, Andrew M.
name: Bonsor, Amy
name: Rogers, Laura K.
name: Brouwers, Marc G.
name: Shorttle, Oliver
name: Tremblay, Pier-Emmanuel
Publisher: name: arXiv
Year: 2024
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: White dwarf atmospheres are frequently polluted by material from their own planetary systems. Absorption features from Ca, Mg, Fe and other elements can provide unique insights into the provenance of this exoplanetary material, with their relative abundances being used to infer accretion of material with core- or mantle-like composition. Across the population of white dwarfs, the distribution of compositions reveals the prevalence of geological and collisional processing across exoplanetary systems. By predicting the distribution of compositions in three evolutionary scenarios, this work assesses whether they can explain current observations. We consider evolution in an asteroid belt analog, in which collisions between planetary bodies that formed an iron core lead to core- or mantle-rich fragments. We also consider layer-by-layer accretion of individual bodies, such that the apparent composition of atmospheric pollution changes during the accretion of a single body. Finally, we consider that compositional spread is due to random noise. We find that the distribution of Ca, Fe and Mg in a sample of 202 cool DZs is consistent with the random noise scenario, although 7 individual systems show strong evidence of core-mantle differentiation from additional elements and/or low noise levels. Future surveys which detect multiple elements in each of a few hundred white dwarfs, with well understood biases, have the potential to confidently distinguish between the three models.
description: 20 pages, 13 figures. Accepted for publication in MNRAS
Additional file 8: of Transcriptome sequencing and analysis of major genes involved in calcium signaling pathways in pear plants (Pyrus calleryana Decne.)
Creators: name: Yuanyuan Xu
name: Xiaogang Li
name: Lin, Jing
name: Zhonghua Wang
name: Qingsong Yang
name: Youhong Chang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology
subject: 60506 Virology

description: Primers used for RT-qPCR. (DOC 36Â kb)
Additional file 1: Figure S1. of Low temperature-induced DNA hypermethylation attenuates expression of RhAG, an AGAMOUS homolog, and increases petal number in rose (Rosa hybrida)
Creators: name: Ma, Nan
name: Chen, Wen
name: Tiangang Fan
name: Yaran Tian
name: Shuai Zhang
name: Daxing Zeng
name: Yonghong Li
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Effect of low temperature on flower diameter (mm) at different flower developmental stages. Data represents means from 5 replicates ± SD. RT, regular temperature (25/15 °C; day/night); LT, low temperature (15/5 °C; day/night). Figure S2. The proportion of deformed rose flowers from plants grown under different temperature conditions. Two year old plants were pruned uniformly and exposed to day/night temperature regimes of 25/15 °C (control, left), 20/10 °C (middle) or 15/5 °C (right). For plants grown under low temperature conditions, once bud differentiation was complete, the temperature was returned to the normal growth temperature. When flowers were at stage 7, the proportion of deformed rose flowers was recorded (n = 50). Figure S3. Silencing of RhAG gene caused conversion of gynoecia to sepal-like organs. Top panel, The RhAG-silenced and TRV control flowers without petals. The sepal-like gynoecia and normal gynoecia are indicated. Middle and Bottom panels, the sepal-like gynoecia from RhAG-silenced flowers. Scale bar, 10 mm in Top panel; 10 mm (left) and 5 mm (right) in Middle panel; 10 mm in Bottom panel. Figure S4. Schematic view of the RhAG gene structure. Lines represent introns, black boxes represent exons. The first base pair of start codon was defined as 0.The numbers indicate the 3’ ends of the DNA fragment. Bp, base pair. Figure S5. Percentage of CG, CHG, and CHH methylation in the RhAG promoter. Percentage of CG (A), CHG (B), and CHH (C) methylation was determined by bisulphite sequencing analysis of the RhAG promoter, using genomic DNA extracted from flower buds grown at the indicated temperature day/night temperatures. Seventeen clones were analyzed for each treatment. Table S1. Oligonucleotide primer sequences. (PDF 645 kb)
Additional file 3: of Transcriptome sequencing and analysis of major genes involved in calcium signaling pathways in pear plants (Pyrus calleryana Decne.)
Creators: name: Yuanyuan Xu
name: Xiaogang Li
name: Lin, Jing
name: Zhonghua Wang
name: Qingsong Yang
name: Youhong Chang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Identification and classification of novel transcripts based on the number of exons. (DOC 40Â kb)