cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 3 of Prediction of Human Phenotype Ontology terms by means of hierarchical ensemble methods
Creators: name: Notaro, Marco
name: Schubach, Max
name: Robinson, Peter
name: Valentini, Giorgio
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Consistency of the predictions: details and theorem proofs. (PDF 153 kb)
Episemura diodon Kasparyan & Manukyan 1987
Creators: name: Klopfstein, Seraina
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Ichneumonidae
Episemura
Episemura diodon

description: Episemura diodon Kasparyan & Manukyan 1987
Diagnosis. Fore wing length 5.0– 5.4 mm. Female antenna with 15, male antenna with 18 or 19 flagellomeres, in the latter with short and narrow tyloids on flagellomeres 6 to 9/10. Mandible with upper tooth not subdivided, thus bidentate. Propodeum with a full set of carinae enclosing basal, lateral and petiolar areas. Hind margins of tergites 4 to 6 concave, metasoma very strongly laterally compressed from apex of third tergite. Hind tibia dark brown.
Colouration of females. Antenna black. Head and mesosoma black, face with a small yellow central face patch, yellow on clypeus and mouthparts, hind corner of pronotum, tegula, subtegular ridge, and upper mesepimeron; scutellum black. Legs orange, coxae black, fore coxa with a yellow apex; femora orange; hind tibia brown, hind tarsus dark. Metasoma black.
Colouration of males. As in females but with yellow ventrally on antenna, entire face. Fore coxa often largely yellow, hind tibia more orange than brown, apex dark.
Material examined. Paratype of Episemura diodon Kasparyan & Manukyan: Russia, Maritime Territory, Svetovodnaya R., (Biamo) basin of Vikin R., from resin on Larix, leg. Zeriken. 1♀, at ZIP.
New for Austria: St. Ulrich, 25.VIII.1977. 1♂, at ZSM. New for Germany, Nürnberg, 30.VII.1982. 1♀, at ZSM (specimen identified as E. ensata by Bauer).
Distribution. Palearactic.
Figures. Scutellum (Fig. 11 H), face (Fig. 19 A).
description: Published as part of Klopfstein, Seraina, 2014, Revision of the Western Palaearctic Diplazontinae (Hymenoptera, Ichneumonidae), pp. 1-143 in Zootaxa 3801 (1) on pages 54-55, DOI: 10.11646/zootaxa.3801.1.1, http://zenodo.org/record/249944
Urinary 1-hydroxypyrene in nonsmokers
Creators: name: Han, In-Kyu
Publisher: name: No Publisher Supplied
Year: 2008

description: This dissertation research examined the validity of urinary 1-OHP as a biomarker of PAH for coke production workers and non-coke oven workers in Anshan City, China. It has been examined whether a first morning urine sample can be used to reflect daily average exposure. Results show that intra-individual differences ranged from 40% to 62% between first morning voids and 24-hour urine composite urine samples. Coke workers showed larger intra-individual differences than non-coke oven workers. Creatinine adjustment of 1-OHP in urine reduced intra-individual difference by approximately 10% for both coke and non-coke oven workers. Despite significant intra-individual difference, a high overall correlation (r=0.76) was observed between first morning and 24-hour average 1-OHP concentrations. Significant effect of season on the association between first morning and 24-hour 1-OHP in urine has been observed. Creatinine adjustment did not improve overall correlation between 1-OHP concentrations in first morning voids and 24-hour composite urine samples.An exposure-biomarker relationship between PAH exposure and urinary 1-OHP concentration has been determined with a wide range of personal inhalation exposure., suggesting a threshold value for this exposure-biomarker relationship at 49 ng/m3 for personal air pyrene and 20 ng/m3 for personal air BaP. The corresponding urinary 1-OHP concentration was 0.46 ?mol/(mol creatinine). However, no significant exposure-biomarker relationship was observed for dietary intake. With inhalation exposure, an increase of 1-OHP concentration by 1 ?mol/(mol creatinine) predicted an increase in personal air concentration of BaP by 0.12 ?g/m3 and 0.13 ?g/m3 in males and females, respectively.In addition, reproducibility of urinary 1-OHP has been demonstrated over 6 to 9 months. Intra-class correlation coefficient for urinary 1-OHP was similar to those for personal air and dietary intakes of pyrene. Within-person variances were larger than between-person variances in all measured media. Urinary 1-OHP had the highest variance ratio (within- to between-person), suggesting that urinary 1-OHP may be less accurate to estimate PAH exposure than personal air and dietary intake. No significant effects of work type and season were found on intra-class correlation in urinary 1-OHP, personal air concentration of pyrene, and dietary pyrene intake.
Tracking deep-water flow on Eirik drift over the past 160 kyr
Creators: name: Henderson, Samuel Straker
Publisher: name: No Publisher Supplied
Year: 2009

description: This dissertation uses surface and deep ocean proxies to understand changes in North Atlantic deep-water production associated with periods of increased freshwater input throughout the Late Pleistocene and Holocene. Coring sites on Eirik Drift have long-term sedimentation rates exceeding 15 cm/kyr., allowing for paleoceanographic reconstructions on Milankovitch and millennial time scales.The transition from glacial North Atlantic Intermediate Water (gNAIW) of marine isotope chron (MIC) 2 to North Atlantic Deep Water (NADW) during the Holocene is examined in Chapter 1. Early Holocene (9000-10,500 ka), sedimentation rates in core 21GGC (3471 m) are >100 cm/kyr., indicating gNAIW winnowed upstream glacial sediments, depositing at 21GGC. Enhanced sediment deposition persisted until ~9ka when long-term rates leveled off at 40 cm/kyr., indicating NADW density had stabilized. From 8.6 to 8.2 ka, catastrophic drainage of glacial Lake Agassiz poured freshwater into the North Atlantic disrupting deep-ocean circulation. Chapter 2 focuses on the past 160 kyr at Site 1306 (2272 m) on the Eirik Drift where highest sedimentation rates occurred during MIC 2- 5d. Mean sortable silt (SS) and ?18O of N. pachyderma (s) are inversely related during this interval, indicating that changes in surface conditions above the Eirik Drift are propagated into the deep ocean. During the past 40 kyr., SS decreases are concomitant with instances of surface ocean freshening.  These intervals correlate with Heinrich Events, suggesting that massive ice flows releasedfrom the continents altered deep ocean circulation.The final chapter examines deep-ocean response during Terminations 1 and 2. Higher insolation forcing across Termination 2 is postulated to promote rapid melting of continental glaciers, leaving little opportunity for continental storage of freshwater.  Conversely, lower insolation across Termination 1 allowed continental ice to linger, allowing for the routing and rapid release of freshwater creating abrupt climate reversals (H1, YD and 8.2 kyr Event). Deep-ocean circulation during MIC 5e loses buoyancy in a fashion similar to the Holocene; however, maximum flow velocities are curtailed for ~7 kyr after the onset of interglacial conditions. This lag is best explained by the melting of Greenland into areas of NCW convection due to increased insolation forcing.
Additional file 14: of Maize RNA PolIV affects the expression of genes with nearby TE insertions and has a genome-wide repressive impact on transcription
Creators: name: Forestan, Cristian
name: Farinati, Silvia
name: Cigliano, Riccardo Aiese
name: Lunardon, Alice
name: Sanseverino, Walter
name: Varotto, Serena
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology
subject: Computational Biology

description: TE families differentially transcribed in rpd1/rmr6 mutant. Differentially expressed TE families (log2FC > |2|; FDR
Riocypris Klie 1935
Creators: name: Meisch, Claude
name: Smith, Robin J.
name: Martens, Koen
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Ostracoda
Podocopida
Cyprididae
Riocypris

description: Riocypris Klie, 1935
Riocypris hinzeae Karanovic, 2008: AU
* Riocypris uruguayensis Klie, 1935: NT
Riocypris whatleyi Coviaga et al., 2018: NT
description: Published as part of Meisch, Claude, Smith, Robin J. & Martens, Koen, 2024, An updated subjective global checklist of the extant non-marine Ostracoda (Crustacea), pp. 1-144 in European Journal of Taxonomy 974 on page 98, DOI: 10.5852/ejt.2024.974.2767, http://zenodo.org/record/14500383
The role of poly (ADP-ribose) polymerase-1 in the celluar response to several marine-derived compounds
Creators: name: Patel, Brijesh B.
Publisher: name: No Publisher Supplied
Year: 2009

description: PARP-1 is a multi-functional protein that is involved in many DNA-dependent genomic processes under normal and pathophysiological conditions.  It is well characterized as a DNA damage detector and responds by catalytic production and attachment of polymers of ADP-ribose (PAR) to nuclear protein targets, facilitating the chromatin changes that are a prerequisite to DNA repair.  In this study, we tested whether PARP-1 is involved in the cellular response to Yondelis®, Zalypsis®, PSL1, and PSL2, novel chemotherapeutic agents with putative DNA damage- and transcription-targeted activities.  We observed a dose-dependent activation of PARP-1 catalytic activity following treatment with all four compounds, while PARP-1 protein levels remained unchanged.  Interestingly, cells derived from PARP-1 null mice were significantly sensitized to the agents, yet, with respect to Yondelis®, only moderate DNA damage was observed which was repaired with equal efficiency by both PARP-1 wildtype and PARP-1 null cells.  While the mechanism of sensitization is unclear, it is of interest to determine whether inhibition of PARP in human cells could sensitize cells to the four agents.  Initial in vivo experiments testing this prediction using MX-1 breast carcinoma xenografts treated with Yondelis® alone or in combination with the PARP-1 inhibitor DIQ, demonstrate an additive effect between these two compounds with regard to tumor volume inhibition and tumor growth delay.  However, corresponding in vitro experiments failed to corroborate this observation.  The effects of PARP-1 on the transcription of genes impacting drug sensitivity, as well as the cyto-protective role of PARP-1 independent of its catalytic function are of interest to direct future efforts to clarify the mechanism of PARP-1-mediated sensitivity to the four agents.  Taken together, these data suggest that PARP-1 plays an important role in the protection of cells to Yondelis®, Zalypsis®, PSL1, and PSL2, and suggest that PARP-1 status may determine the sensitivity or resistance of cells treated with these agents.
SUT YO`NALISHIDAGI QORAMOLLARNING BUQACHALARIDAN GO`SHT  ISHLAB CHIQARISHDA OZIQLANTIRISHNING AHAMYATI
Creators: name: Ilmiy rahbar Amonov Rasul Chorshambi o'g'li, Samarqand davlat veterinariya meditsinasi, chorvachilik va biotexnalogiyalar universiteti Nukus filiali
name: Bakalavr  Jańabaev Timur Baxadir ulı, Samarqand davlat veterinariya meditsinasi, chorvachilik va biotexnalogiyalar universiteti Nukus filiali
name: Bakalavr  Xojametova Dilfuza Berdibek qızı, Samarqand davlat veterinariya meditsinasi, chorvachilik va biotexnalogiyalar universiteti Nukus filiali
Publisher: name: Zenodo
Year: 2024

description: Ushbu  maqolada  sut  yo`nalishidagi  qoramol  zotlarining    buqachalarini oziqlantirishi,  o‘sish va ulg‘ayishini hisoblash va me’yorlash  tuyimli moddalar bilan taminlash, yog‘i olingan va yog‘i olinmagan sutlarning buzoqlarga tasiri, buzoqlarning usishi va rivojlanishi uchun sariflanayotgan oziqalarning tasnifi va  bir kunlik vazn olganligi o`rganilgan.
Episemura ensata
Creators: name: Klopfstein, Seraina
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Ichneumonidae
Episemura
Episemura ensata

description: Episemura ensata (Bauer 1981, Sussaba) (stat. rev.)
Diagnosis. (Male unknown). Fore wing length 4.4–5.1 mm. Antenna of female with 16 flagellomeres. Mandible with upper tooth subdivided, thus appearing tridentate. Propodeum with a full set of carinae enclosing basal, lateral and petiolar areas. Hind margins of tergites 4 to 6 only weakly concave to almost straight, metasoma weakly laterally compressed from apex of third tergite. Hind tibia orange, same colour as hind femur.
Colouration of females. Antenna black. Head and mesosoma black, face with a small yellow central face patch, yellow on clypeus and mouthparts, hind corner of pronotum, tegula, subtegular ridge, and upper mesepimeron; scutellum black. Legs orange, coxae black, fore coxa with a yellow apex; femora orange; hind tibia brown, hind tarsus dark. Metasoma black.
Material examined. Holotype of Sussaba ensata Bauer: Germany, Leuzenberg, 2.VII.1952. 1♀, at ZSM. Paratype: Germany, Nürnberg, 29.VI.1976. 1♀, at ZSM.
New for Switzerland: Valais, Les Agettes, Les Mayens-de-Sion, VIII.1961. 1♀, at MZL. Additonal material. Germany, Bayern, Kelheim, Hienheimerforst, Buchberg, trap on larch tree, 25.VII.1996. 1♀, at ZSM.
Distribution. Western Palaearctic.
Figures. Metasoma (Fig. 11 F), ovipositor sheaths (Fig. 11 I), face (Fig. 19 B), habitus (Fig. 30 C).
Notes. This species has been synonymized with E. diodon (Sebald et al. 1988) but represents a distinct species, recognizable by the tridentate instead of bidentate mandible, the less strongly compressed metasoma, and the colouration of the hind tibia. One of the specimens identified as E. ensata by Bauer is actually an E. diodon, and both species thus occur in central Europe.
description: Published as part of Klopfstein, Seraina, 2014, Revision of the Western Palaearctic Diplazontinae (Hymenoptera, Ichneumonidae), pp. 1-143 in Zootaxa 3801 (1) on page 55, DOI: 10.11646/zootaxa.3801.1.1, http://zenodo.org/record/249944
The genome sequencing of Chrysolophus amherstiae
Creators: name: 王松波(SongboWang)
Publisher: name: CNGB
Year: 2024
Subjects: Raw sequence reads
Monoisolate
Evolution

description: This high-quality genome assembly is a valuable genomic resource that will facilitate future investigations into the functional genomics, conservation genetics, and interspecific hybridization of the Lady Amhersts Pheasant.
Additional file 4 of Prediction of Human Phenotype Ontology terms by means of hierarchical ensemble methods
Creators: name: Notaro, Marco
name: Schubach, Max
name: Robinson, Peter
name: Valentini, Giorgio
Publisher: name: Figshare
Year: 2017
Subjects: subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Science Policy
subject: Computational Biology

description: Prediction of Human Phenotype Ontology terms: detailed experimental results using STRING network. (PDF 92.3 kb)
Eurytyloides Nakanishi 1978
Creators: name: Klopfstein, Seraina
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Ichneumonidae
Eurytyloides

description: Eurytyloides Nakanishi 1978
Type species. Eurytyloides kusigematii Nakanishi 1978
Diagnosis. Female Eurytyloides can easily be diagnosed by the location of the spiracle of the second tergite on the laterotergite in combination with concave hind margins of tergites 3 to 6, which distinguishes it from Sussaba, and short ovipositor sheaths, which distinguish it from Episemura. The propodeums of the European and the Russian species are unique in that the lateral longitudinal carinae and the carinae surrounding the petiolar area do not meet as in other diplazontines but are parallel and very close to each other until the apex of the propodeum. The male of the European species is not known, but male Eurytyloides kusigematii Nakanishi from Japan have unique, polished and plate-like tyloids on flagellomeres 1 to 2 or 3.
Face coriaceous and matt, more polished below, without vertical impressions, in females entirely black or with a yellow central patch (male of the European species unknown). Clypeus with apical margin thin, with a basal elevation that makes it slightly concave in profile. Female antenna stout, preapical flagellomere quadrate. Mesoscutum with notauli indicated as rugose sculpture; smooth with very small punctures around seta roots, yellow shoulder marks absent; mesopleuron entirely smooth and shining; epicnemial carina complete ventrally. Propodeum with a full set of carinae enclosing basal, petiolar and lateral areas; propodeal spiracle inconspicuous; scutellum carinate only on basal third. Fore wing areolet absent; hind wing with 1 basal hamulus. Hind tibia orange-brown with apex slightly dark. Female metasoma strongly compressed from third segment, tergites 3 to 6 with hind margins strongly concave, extending much further back laterally than dorsally; tergites without transverse impressions. First tergite without median dorsal carinae. Second and third tergites with spiracles on the laterotergites, below lateral fold. Metasoma black or obscurely brown to reddish. Ovipositor sheaths 0.5 times as long as hind tibia, parallel-sided and fully enclosing ovipositor, smooth, apically and ventrally with setae. Male apical scerites unknown.
Distribution. Palaearctic. The genus Eurytyloides was described based on two species from Japan (Nakanishi 1978), and an additional species was later described from the Russian Far East (Manukyan 1995). In Europe, a single female was found in a Malaise trap set up in Savernake forest in South West England.
Biology. Nothing is known about the biology of this genus.
description: Published as part of Klopfstein, Seraina, 2014, Revision of the Western Palaearctic Diplazontinae (Hymenoptera, Ichneumonidae), pp. 1-143 in Zootaxa 3801 (1) on pages 55-56, DOI: 10.11646/zootaxa.3801.1.1, http://zenodo.org/record/249944
Romecytheridea Wouters 1988
Creators: name: Meisch, Claude
name: Smith, Robin J.
name: Martens, Koen
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Ostracoda
Podocopida
Cytherideidae
Romecytheridea

description: Romecytheridea Wouters, 1988
* Romecytheridea ampla Wouters, 1988: AT
Romecytheridea bacata Wouters & Martens, 2007: AT
Romecytheridea belone Wouters & Martens, 2001: AT
Romecytheridea concurrens Wouters & Martens, 2008: AT
Romecytheridea longior Wouters & Martens, 1999: AT
Romecytheridea plegma Wouters & Martens, 2001: AT
Romecytheridea tenuisculpta (Rome, 1962) Wouters 1988: AT
Haplocytheridea tenuisculpta Rome, 1962
description: Published as part of Meisch, Claude, Smith, Robin J. & Martens, Koen, 2024, An updated subjective global checklist of the extant non-marine Ostracoda (Crustacea), pp. 1-144 in European Journal of Taxonomy 974 on page 98, DOI: 10.5852/ejt.2024.974.2767, http://zenodo.org/record/14500383
Additional file 5: of Carbohydrate-active enzymes in Trichoderma harzianum: a bioinformatic analysis bioprospecting for key enzymes for the biofuels industry
Creators: name: Jaire Ferreira Filho
name: Horta, Maria
name: Beloti, Lilian
name: Clelton Dos Santos
name: Souza, Anete De
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Evolutionary Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Multiple sequence alignments used in the phylogenetic analysis of the GH55, AA9/GH61 and CE5 families. (PDF 1916 kb)
Towards Autonomous Micropipette Positioning in Eye Surgery by Employing Deep Learning Algorithm in Micro-Cannulation
Creators: name: Mukesh Madanan, Nurul Akhmal Mohd Zulkefli
Publisher: name: TuEngr Group
Year: 2023
Subjects: Artificial Intelligence
Machine Learning
Deep Learning
Robotic Surgery
Eye Surgery
Micro-cannulation
Enhanced Guassian Filtering
Bee Colony Optimization
CNN
Image Processing

description: International Transaction Journal of Engineering, Management, & Applied Sciences & Technologies, 14, 1, 14A1A: 1-20
Rudjakoviella Triebel 1973
Creators: name: Meisch, Claude
name: Smith, Robin J.
name: Martens, Koen
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Ostracoda
Podocopida
Cyprididae
Rudjakoviella

description: Rudjakoviella Triebel, 1973
Nom. nov. pro Xenocypris Triebel, 1962 nec Günther, 1868 (genus of fish) (fide Malz 1973)
* Rudjakoviella prolongata (Triebel, 1962) Triebel 1973: NT
Xenocypris prolongata Triebel, 1962
Syn.: Xenocypris procera Triebel, 1962 (nom. nud.) (fide Martens & Behen 1994)
description: Published as part of Meisch, Claude, Smith, Robin J. & Martens, Koen, 2024, An updated subjective global checklist of the extant non-marine Ostracoda (Crustacea), pp. 1-144 in European Journal of Taxonomy 974 on page 98, DOI: 10.5852/ejt.2024.974.2767, http://zenodo.org/record/14500383
Insights into the cultivable bacteria from mangroves and a genomic view of their function in mangrove plant growth
Creators: name: 江浦滋(Puzi JIANG)
Publisher: name: CNGB
Year: 2025
Subjects: Genome sequencing and assembly
Assembly
Monoisolate
Environmental

description: Bacteria are indispensable components in the mangrove ecosystem and perform important ecosystem functions. Despite their putative importance, the isolation and future function exploration of mangrove-derived bacteria have received little attention. Here, we isolated a total of 163 bacterial strains affiliated with 44 genera from the mangrove sediments, among which 51 potential novel species and 2 novel genera were detected. We also sequenced 75 genomes of these bacterial isolates and collected 160 available genomes of mangrove-derived isolates recovered from the NCBI, and finally presented an integrated genomic characterization of these 235 isolates from the mangrove ecosystem. Genomic analysis revealed their putative functions such as carbohydrate, amino acid, and vitamin metabolism to support their host plant. Furthermore, the present study revealed some bacterial species such as Klebsiella and Agrobacterium were vital in promoting mangrove plant growth via stimulating the C, N, and S cycles, as well as PGP function. Our findings discovered and obtained many novel bacterial species from the mangrove ecosystem and demonstrated the crucial roles that bacteria play in the mangrove ecosystem, providing new insight into the application of key bacterial taxa for microbiome manipulation in future mangrove restoration.
Additional file 15: of Maize RNA PolIV affects the expression of genes with nearby TE insertions and has a genome-wide repressive impact on transcription
Creators: name: Forestan, Cristian
name: Farinati, Silvia
name: Cigliano, Riccardo Aiese
name: Lunardon, Alice
name: Sanseverino, Walter
name: Varotto, Serena
Publisher: name: Figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Distribution plots Pol IV silenced loci along maize genome. The distribution plots of the differentially expressed genes along the ten maize chromosomes indicate the preferential co-localization of rpd1/rmr6 de-repressed genes (left plots). The chromosomes were divided in 100Kbp not-overlapping windows and for each window the percentage of genes (with respect to the total chromosome genes; blue bars) and of over-expressed genes (with respect to the window gene content) are reported. Yellow and red bars depict the window percentage of up-regulated genes shared in at least three or two independent comparisons, respectively. As control, the distribution of 880 genes randomly selected from the list of 40,457 expressed genes is reported as green bars (plots on the right). The two distributions resulted strongly statistically different (P = 1 × 10−16, by Wilcoxon test), with the random genes uniformly distributed along the genome (they resulted included in 876 genome 100 Kb windows versus the 737 including the up-regulated genes). (PDF 1141 kb)
Additional file 5 of Prediction of Human Phenotype Ontology terms by means of hierarchical ensemble methods
Creators: name: Notaro, Marco
name: Schubach, Max
name: Robinson, Peter
name: Valentini, Giorgio
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Prediction of Human Phenotype Ontology terms: detailed experimental results using UA integrated network. (PDF 92.3 kb)
Rugosuscandona Kulkoyluoglu 2017
Creators: name: Meisch, Claude
name: Smith, Robin J.
name: Martens, Koen
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Ostracoda
Podocopida
Candonidae
Rugosuscandona

description: Rugosuscandona Külköylüoğlu et al., 2017
* Rugosuscandona scharfi Külköylüoğlu et al., 2017: NA
description: Published as part of Meisch, Claude, Smith, Robin J. & Martens, Koen, 2024, An updated subjective global checklist of the extant non-marine Ostracoda (Crustacea), pp. 1-144 in European Journal of Taxonomy 974 on page 98, DOI: 10.5852/ejt.2024.974.2767, http://zenodo.org/record/14500383
Cyclocoelidae Stossich 1902
Creators: name: Dronen, Norman O.
name: Blend, Charles K.
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Plagiorchiida
Cyclocoelidae

description: Key to subfamilies of Cyclocoelidae Stossich, 1902
1a. Ovary forming a triangle with the testes.................................................................. 2
1b. Ovary nearly in a straight line with testes................................................................. 4
2a. Ovary intertesticular............................................................ Cyclocoelinae Stossich, 1902
2b. Ovary pretesticular or posttesticular...................................................................... 3
3a. Ovary pretesticular to opposite anterior testis...................................... Haematotrephinae Dollfus, 1948
3b. Ovary posttesticular or opposite posterior testis...................................... Szidatitreminae Dronen, 2007
4a. Ovary posttesticular........................................................ Ophthalmophaginae Harrah, 1922
4b. Ovary intertesticular................................................................................... 5
5a. Testes tandem to nearly tandem.................................................... Hyptiasminae Dollfus, 1948
5b. Testes nearly side by side..................................................... Skrjabinocoelinae Dronen, 2007
description: Published as part of Dronen, Norman O. & Blend, Charles K., 2015, Updated keys to the genera in the subfamilies of Cyclocoelidae Stossich, 1902, including a reconsideration of species assignments, species keys and the proposal of a new genus in Szidatitreminae Dronen, 2007, pp. 1-100 in Zootaxa 4053 (1) on page 10, DOI: 10.11646/zootaxa.4053.1.1, http://zenodo.org/record/237117
Sagittocythere Hart 1962
Creators: name: Meisch, Claude
name: Smith, Robin J.
name: Martens, Koen
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Ostracoda
Podocopida
Entocytheridae
Sagittocythere

description: Sagittocythere Hart, 1962
* Sagittocythere barri (Hart & Hobbs, 1961) Hart 1962: NA
Entocythere barri Hart & Hobbs, 1961
Sagittocythere stygia Hart & Hart, 1966: NA
description: Published as part of Meisch, Claude, Smith, Robin J. & Martens, Koen, 2024, An updated subjective global checklist of the extant non-marine Ostracoda (Crustacea), pp. 1-144 in European Journal of Taxonomy 974 on page 98, DOI: 10.5852/ejt.2024.974.2767, http://zenodo.org/record/14500383
Additional file 5 of Prediction of Human Phenotype Ontology terms by means of hierarchical ensemble methods
Creators: name: Notaro, Marco
name: Schubach, Max
name: Robinson, Peter
name: Valentini, Giorgio
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Prediction of Human Phenotype Ontology terms: detailed experimental results using UA integrated network. (PDF 92.3 kb)
Theoretical and Experimental Investigation to Polarize a Deuterium Beam
Creators: name: Sharma, Harsh
Publisher: name: Forschungzentrum Jülich
Year: 2024

description: Masterarbeit, FH Aachen, Campus Jülich, 2024; 114 pp. (2024). = Masterarbeit, FH Aachen, Campus Jülich, 2024
description: The phenomenon of hyperpolarization involves inducing heterogeneity in the occupancynumbers within the hyperfine states of an atom. This effect finds diverse applications, rangingfrom Nuclear Magnetic Resonance (NMR) to enhancing nuclear fusion processes throughthe concept of polarized fuel. At the Institute für Kernphysik, a method has been developedutilizing radio wave pumping and quantum interference to achieve significant polarizationin weak magnetic field regions. This thesis aims to provide both theoretical and experimentalinvestigation into the utilization of such hyperpolarization methods for a deuteriumbeam. The developed device involves two counter-current carrying solenoids. Ramping thecurrent in this device produces an oscillating spectrum directly correlating to quantum interferences.The simulation aspects offer detailed analyses of systematic effects within theexperimental setup. The results of Lamb-shift polarimeter measurements conducted for themetastable D beam recorded a polarization value of pzz ∼ -0.40 and pz ∼ -0.33 at amagnetic field value of 2.81 mT for the case of an electron polarized beam to the α hyperfinestates. Similarly, simulations predict a polarization value of pzz = 0.20 and pz = 0.09 fora magnetic field value of 2.86 mT . However, measurements with a ground state D beampresent a different scenario, failing to yield a comparable signal. Nonetheless, accordingto theoretical predictions based on simulations, for a magnetic field value of 2.75 mT, atensor polarization of pzz = -0.28 and vector polarization of pz = -0.04 can be expected.These findings suggest that such a method requires further investigation to provide moreexperimental results in order to support the mathematical description of the model.
Sanyuania Zhao & Han 1980
Creators: name: Meisch, Claude
name: Smith, Robin J.
name: Martens, Koen
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Ostracoda
Podocopida
Cytherideidae
Sanyuania

description: Sanyuania Zhao & Han, 1980
Type species: Sanyuania psaronius Zhao & Han, 1980 (marine fossil species)
Sanyuania segersi Savatenalinton & Martens, 2009: OL
description: Published as part of Meisch, Claude, Smith, Robin J. & Martens, Koen, 2024, An updated subjective global checklist of the extant non-marine Ostracoda (Crustacea), pp. 1-144 in European Journal of Taxonomy 974 on page 99, DOI: 10.5852/ejt.2024.974.2767, http://zenodo.org/record/14500383
Additional file 15: of Maize RNA PolIV affects the expression of genes with nearby TE insertions and has a genome-wide repressive impact on transcription
Creators: name: Forestan, Cristian
name: Farinati, Silvia
name: Cigliano, Riccardo Aiese
name: Lunardon, Alice
name: Sanseverino, Walter
name: Varotto, Serena
Publisher: name: Figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology
subject: Computational Biology

description: Distribution plots Pol IV silenced loci along maize genome. The distribution plots of the differentially expressed genes along the ten maize chromosomes indicate the preferential co-localization of rpd1/rmr6 de-repressed genes (left plots). The chromosomes were divided in 100Kbp not-overlapping windows and for each window the percentage of genes (with respect to the total chromosome genes; blue bars) and of over-expressed genes (with respect to the window gene content) are reported. Yellow and red bars depict the window percentage of up-regulated genes shared in at least three or two independent comparisons, respectively. As control, the distribution of 880 genes randomly selected from the list of 40,457 expressed genes is reported as green bars (plots on the right). The two distributions resulted strongly statistically different (P = 1 × 10−16, by Wilcoxon test), with the random genes uniformly distributed along the genome (they resulted included in 876 genome 100 Kb windows versus the 737 including the up-regulated genes). (PDF 1141 kb)
Additional file 4: of Genetic variation and population structure of maize inbred lines adapted to the mid-altitude sub-humid maize agro-ecology of Ethiopia using single nucleotide polymorphic (SNP) markers
Creators: name: Berhanu Ertiro
name: Kassa Semagn
name: Biswanath Das
name: Olsen, Michael
name: Maryke Labuschagne
name: Mosisa Worku
name: Dagne Wegary
name: Girum Azmach
name: Ogugo, Veronica
name: Tolera Keno
name: Beyene Abebe
name: Temesgen Chibsa
name: Abebe Menkir
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Heat map of the 265 inbred lines based on relative kinship matrix estimated from 220,878 polymorphic SNPs. (DOCX 211Â kb)
Additional file 4: of Genetic variation and population structure of maize inbred lines adapted to the mid-altitude sub-humid maize agro-ecology of Ethiopia using single nucleotide polymorphic (SNP) markers
Creators: name: Berhanu Ertiro
name: Kassa Semagn
name: Biswanath Das
name: Olsen, Michael
name: Maryke Labuschagne
name: Mosisa Worku
name: Dagne Wegary
name: Girum Azmach
name: Ogugo, Veronica
name: Tolera Keno
name: Beyene Abebe
name: Temesgen Chibsa
name: Abebe Menkir
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Marine Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Heat map of the 265 inbred lines based on relative kinship matrix estimated from 220,878 polymorphic SNPs. (DOCX 211Â kb)
Cyclocoelum bikanerensis Gupta 1964
Creators: name: Dronen, Norman O.
name: Blend, Charles K.
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Plagiorchiida
Cyclocoelidae
Cyclocoelum
Cyclocoelum bikanerensis

description: C. bikanerensis Gupta, 1964
Type host. Eurasian coot, Fulica atra Linnaeus (Gruiformes: Rallidae).
Type locality. Devikund, Bikaner District, Rajasthani, India.
Additional locality. Kolkata (historically Calcutta in English), West Bengal, India—Gupta (1964); Nama (1984).
Remarks. Although described in 1964, this species was not listed by Yamaguti (1971). Rudimentary oral sucker present—Gupta (1964); Nama (1984).
description: Published as part of Dronen, Norman O. & Blend, Charles K., 2015, Updated keys to the genera in the subfamilies of Cyclocoelidae Stossich, 1902, including a reconsideration of species assignments, species keys and the proposal of a new genus in Szidatitreminae Dronen, 2007, pp. 1-100 in Zootaxa 4053 (1) on page 14, DOI: 10.11646/zootaxa.4053.1.1, http://zenodo.org/record/237117
Additional file 6 of Prediction of Human Phenotype Ontology terms by means of hierarchical ensemble methods
Creators: name: Notaro, Marco
name: Schubach, Max
name: Robinson, Peter
name: Valentini, Giorgio
Publisher: name: Figshare
Year: 2017
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: HPO Prediction of Newly Annotated Genes: detailed experimental results. (PDF 77.4 kb)
Cyclocoelum cornu Zeder 1800
Creators: name: Dronen, Norman O.
name: Blend, Charles K.
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Plagiorchiida
Cyclocoelidae
Cyclocoelum
Cyclocoelum cornu

description: C. cornu (Zeder, 1800)
Type host. Gray heron, Ardea cinerea Linnaeus (Ciconiiformes: Ardeidae).
Type locality. Europe; specific type locality unknown.
Remarks. This species was originally listed as Distoma cornu Zeder, 1800. It was considered to be Monostoma cornu (Zeder, 1800) (= Monostome cornu) and Amphistoma cornu (Rudolphi, 1809) by Dujardin (1845); however, it was incompletely described by Zeder (1800) and Rudolphi (1809), and only briefly redescribed by Dujardin (1845). There is not enough information available beyond body size to effectively delineate this species and in our opinion, this species should be considered a species inquirenda; it was not included in the key to species provided below.
description: Published as part of Dronen, Norman O. & Blend, Charles K., 2015, Updated keys to the genera in the subfamilies of Cyclocoelidae Stossich, 1902, including a reconsideration of species assignments, species keys and the proposal of a new genus in Szidatitreminae Dronen, 2007, pp. 1-100 in Zootaxa 4053 (1) on page 14, DOI: 10.11646/zootaxa.4053.1.1, http://zenodo.org/record/237117
title: High selectivity polymer-nano-porous particle membrane structures
Creators: name: Lloyd, Douglas R.
name: Funk, Caleb V.
Publisher: name: United States Patent and Trademark Office
Year: 2012
Subjects: subject: B01D67/0018
subject: B01D67/0079
subject: B01D69/08
subject: B01D69/148
subject: B01D71/028
subject: B01D2325/20
subject: C08J9/0066
subject: C08J3/212
subject: C08J9/0071
subject: Y10T428/24995
subject: 428/304.4
subject: 521/27

description: Methods comprising mixing at least one nano-porous particle into a homogeneous solution of a polymer and a diluent at an elevated temperature to form a mixture; and cooling the mixture to solidify the polymer. Membranes comprising at least one nano-porous particle; and a polymer; wherein the at least one nano-porous particle comprises pores ranging from about 0.1 nanometers to about 10,000 nanometers in size.
Sarscypridopsis McKenzie 1977
Creators: name: Meisch, Claude
name: Smith, Robin J.
name: Martens, Koen
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Ostracoda
Podocopida
Cyprididae
Sarscypridopsis

description: Sarscypridopsis McKenzie, 1977
* Sarscypridopsis aculeata (Costa, 1847) McKenzie 1977: AT, AU, NA, NT, PA
Cypris aculeata Costa, 1847
Syn.: Cypris aculeata Lilljeborg, 1853 (fide Alm 1915)
Syn.: Potamocypris gregaria Sars, 1895 (fide Sywula 1966)
Syn.: Cypridopsella granulata Sars, 1903 (fide Sywula 1966)
Syn.: Cypridopsis triquetra G.W. Müller, 1908 (fide Martens 1984)
Syn.: Cypridopsis spinifera Sars, 1924 (fide Martens et al. 1996)
Syn.: Cypridopsis obstinata Barclay, 1968 (fide Meisch 2000)
Sarscypridopsis brevis (Sars, 1924) Martens 1984: AT
Cypridopsis brevis Sars, 1924
Sarscypridopsis clavata (Sars, 1924) Martens 1984: AT
Cypridopsis clavata Sars, 1924
Sarscypridopsis denticulata Smith & Ozawa, 2023: PA
Sarscypridopsis echinata (G.W. Müller, 1908) McKenzie 1977: AT
Cypridopsis echinata G.W. Müller, 1908
Sarscypridopsis elizabethae (Sars, 1924) Martens 1984: AT
Cypridopsis elizabethae Sars, 1924
Sarscypridopsis glabrata (Sars, 1924) Martens 1984: AT
Cypridopsis glabrata Sars, 1924
Sarscypridopsis harundineti Szwarc et al., 2021: AT
Sarscypridopsis hirsuta (Sars, 1924) Martens 1984: AT
Cypridopsis hirsuta Sars, 1924
Sarscypridopsis katesae (Hartmann, 1957) Martens 1984: AT
Cypridopsis katesae Hartmann, 1957
Sarscypridopsis kurilensis (Schornikov, 1974) comb. nov.: PA
Cypridopsis kurilensis Schornikov, 1974
Sarscypridopsis lanzarotensis (Mallwitz, 1984) Meisch & Broodbakker 1990: PA
Cypridopsis lanzarotensis Mallwitz, 1984
Sarscypridopsis ochracea (Sars, 1924) McKenzie 1977: AT, AU, OL
Cypridopsis ochracea Sars, 1924
Sarscypridopsis punctata (Sars, 1924) Martens 1984: AT
Cypridopsis punctata Sars, 1924
Sarscypridopsis pyramidata (Sars, 1924) Martens 1984: AT
Cypridopsis pyramidata Sars, 1924
Sarscypridopsis reniformis (Sars, 1924) Martens 1984: AT
Cypridopsis reniformis Sars, 1924
Sarscypridopsis sarsi (Klie, 1935) Martens 1984: AT
Nom. nov. pro Cypridopsis tumidula Sars, 1924 nec Sars, 1910
Cypridopsis sarsi Klie, 1935
Sarscypridopsis striolata (Sars, 1924) McKenzie 1977: AT
Cypridopsis striolata Sars, 1924
Sarscypridopsis tonsa (Sars, 1924) Martens 1984: AT
Cypridopsis tonsa Sars, 1924
Sarscypridopsis trigonella (Sars, 1924) Martens 1984: AT
Cypridopsis trigonella Sars, 1924
description: Published as part of Meisch, Claude, Smith, Robin J. & Martens, Koen, 2024, An updated subjective global checklist of the extant non-marine Ostracoda (Crustacea), pp. 1-144 in European Journal of Taxonomy 974 on page 99, DOI: 10.5852/ejt.2024.974.2767, http://zenodo.org/record/14500383
Associations of food insecurity, socioeconomic status, and type 2 diabetes among Mexican Americans and non-hispanic whites in the United States
Creators: name: Jang, Seo Yeon
Publisher: name: No Publisher Supplied
Year: 2009

description: Mexican Americans are the largest segment of Hispanics in the United States of America (U.S.). Hispanics and Mexican Americans are more likely to have higher rates of type 2 diabetes (T2D) and its risk factors such as obesity, physical inactivity, low socioeconomic status (SES), and food insecurity compared to non-Hispanic Whites (NHW). However, the research looking into the associations between these risk factors and T2D, and the potential racial/ethnic differences is limited. This study examined whether food insecurity was related to T2D independently of low SES and a wide range of T2D risk factors among Mexican Americans and non-Hispanic Whites (NHW) in a nationally representative sample in the U.S. About 12,944 adults, including 2,955 Mexican Americans and 6,363 non-Hispanic Whites, 20-84yr, from the National Health and Nutrition Examination Survey (NHANES) 1999-2004 were included in the analyses. Multivariate logistic regression analyses indicated that  participants with marginal or very low food security (vs. high food security) at the household level were more likely to have T2D after adjusting for education, employment, poverty, race/ethnicity, age, gender, and country of birth (p<0.05). Following further adjustment for obesity, lifestyle factors (physical activity, cigarette smoking, alcohol and dietary intakes), family history of diabetes, and comorbidities, participants with very low (household) food security remained more likely to have T2D (OR 1.84, CI 1.02-3.31). When the two racial/ethnic groups were examined separately, very low food security became a stronger determinant of T2D among NHWs (OR 3.53, CI 1.58-7.87), but this association was attenuated among Mexican Americans. Low SES, as determined by education and employment levels, were marginally related to higher likelihood of having T2D among Mexican Americans (p=0.050) but not among NHWs. These results suggest that associations of food insecurity and SES with T2D vary between Mexican American and NHW adults. This may require different approaches for prevention efforts tailored to the needs of each racial/ethnic group.
Cyclocoelum crenulatum Rudolphi 1809
Creators: name: Dronen, Norman O.
name: Blend, Charles K.
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Plagiorchiida
Cyclocoelidae
Cyclocoelum
Cyclocoelum crenulatum

description: C. crenulatum (Rudolphi, 1809)
Type host. Common redstart, Phoenicurus phoenicurus (Linnaeus) (Syn. Motacilla phoenicurus Linnaeus) (Passeriformes: Muscucapidae). Host listed as Sylvia phenicurus Latham (unknown species; likely a synonym of P. phoenicurus)— Dujardin (1845), but it was given as Motacilla phoenicurus by Yamaguti (1971).
Type locality. Europe; specific type locality unknown.
Remarks. This species was orignally listed as Monostoma crenulatum Rudolphi, 1809. It was incompletely described by both Rudolphi (1809) and Dujardin (1845). There is not enough information available beyond body size to effectively delineate this species, and in our opinion, this species should be considered a species inquirenda; it was not included in the key to species provided below.
description: Published as part of Dronen, Norman O. & Blend, Charles K., 2015, Updated keys to the genera in the subfamilies of Cyclocoelidae Stossich, 1902, including a reconsideration of species assignments, species keys and the proposal of a new genus in Szidatitreminae Dronen, 2007, pp. 1-100 in Zootaxa 4053 (1) on page 14, DOI: 10.11646/zootaxa.4053.1.1, http://zenodo.org/record/237117