cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1 of Astaxanthin attenuates cigarette smoke-induced small airway remodeling via the AKT1 signaling pathway
Creators: name: Ding, Haidong
name: Yan, Liming
name: Wang, Yu
name: Lu, Ye
name: Deng, Mingming
name: Wang, Yingxi
name: Wang, Qiuyue
name: Zhou, Xiaoming
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Cell Biology
Molecular Biology
Biological Sciences not elsewhere classified
Cancer
Science Policy

description: Supplementary Material 1: Supplementary Fig. 1 Weight change of mice in the preliminary experiment The weight of mice in control group, CS exposure combined with CSE intraperitoneal injection group (CSE group), CS exposure combined with CSE intraperitoneal injection + high dose (100 mg/kg) of AXT (CSE+H-AXT) group, and CSE + vehicle group (CS exposure combined with CSE intraperitoneal injection + olive oil) group.
THE IMPACT OF KETOGENIC DIET ON HORMONE LEVELS IN WOMEN WITH POLYCYSTIC OVARY SYNDROME: A SYSTEMATIC REVIEW
Creators: name: Zahra Abdullah Alhamdan  , Khalil Ibrahim Bograin  , Maryam Ali Alkhalaf  ,  Nujud Abdullah Alessa , Fatimah Hani Fadhel  , Sajidah Jafar Al Mutar  ,  Zahraa Ahmed Alasker  , Fatimah Essa Alruwai  , Fatimah Ibrahim Al Ibrahim  , Wadeea Hasan Darwish
Publisher: name: Zenodo
Year: 2024

description: Background: There is a complex and multifaceted association between hormone levels in women with Polycystic Ovary Syndrome (PCOS) and the ketogenic diet.  Objectives: To conduct a thorough evaluation and analysis of the literature on the impact of the ketogenic diet on PCOS-affected women's hormone levels. Methods: A comprehensive exploration of relevant databases was conducted to identify studies meeting the inclusion criteria. To locate relevant literature, a comprehensive search of PubMed, Web of Science, SCOPUS, and Science Direct was carried out. The entire procedure made use of the Rayyan QRCI. Results: Six trials including 506 women in total were included in our data. The follow-up duration ranged from 45 days and 12 weeks. All of the included studies recorded significant reductions in the mean levels of total testosterone and LH/FSH ratio following the ketogenic diet women among women with PCOS. The ketogenic diet also positively affected menstrual regularity, metabolic parameters, anthropometric parameters, and endocrine parameters. Thus, ketogenic diet is a potential treatment option for PCOS. Conclusion: The extent to which these findings may be extensively applied to the PCOS community is limited by the numerous concerns that remain in the accessible literature and require closer examination. However, these findings have important treatment implications, and endocrinologists, gynecologists, and dieticians should carefully plan and modify particular meal recommendations for women with PCOS. Finding the potential for nutritional therapies that can support individualized preventive tactics to safeguard fertility beginning in youth is critical given the long-term effects of PCOS.

Keywords: Ketogenic diet, hormone levels, Polycystic Ovary Syndrome, endocrine disorders, testosterone, hormonal balance, metabolic health, hormone regulation.
Formal and informal controls of government over social security expenditure: an analysis
Creators: name: Grose, Robert
Publisher: name: RMIT University
Year: 2024

description: While a significant amount of research has examined the more traditional budgetary and procedural controls used by governments to maintain control over social security expenditure, very little research has examined the more obscure formal social controls used to achieve the same purpose.

The primary aim of this study was to fill this research vacuum by examining both the formal and informal mechanisms used by governments to maintain control over social security expenditure and to achieve longer-term public policy appropriation. In particular the study focused on the payment of Job Newstart and Youth Allowances and how the social control discourse of marginalisation was used to achieve such control.

The study was undertaken in two stages. In stage one, an e-mail questionnaire was distributed to Job Network consultants (n = 739) employed at 66 not-for-profit Job Network Providers throughout Australia. In stage two, focus group interviews were conducted to expand on the responses previously obtained from the e-mail questionnaire survey.

The study produced several significant findings from the views of Job Network consultants. Most significantly the results support Foucault's discourse on marginalisation. That is the results help to explain how consultants identify and single out people who do not fit the norm and therefore represent a case for special treatment. The effect of this marginalisation process is that governments are able to assert power and authority over welfare claimants and that the process is justified from the government's viewpoint. It would also seem that society and the individual accept such institutional arrangements. The techniques of marginalisation are disciplinary in their nature and relate to the multiplication of social security rules and procedures and a correlative division of the claimant population in accordance with constitutive criteria of status and entitlement. The study also concluded that Job Network consultants recognised that the breaching regime should be modified longer-term to take account of the i nformal ethical and moral criteria of fairness, justice and the rights of individuals. Having said this however, the same group of consultant's indicated in very strong terms that recipients' of Newstart and Youth Allowances should comply with their mutual obligation requirements and that they should be penalised in those instances where they do not comply with these requirements.
Additional file 2 of Astaxanthin attenuates cigarette smoke-induced small airway remodeling via the AKT1 signaling pathway
Creators: name: Ding, Haidong
name: Yan, Liming
name: Wang, Yu
name: Lu, Ye
name: Deng, Mingming
name: Wang, Yingxi
name: Wang, Qiuyue
name: Zhou, Xiaoming
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Cell Biology
Molecular Biology
Biological Sciences not elsewhere classified
Cancer
Science Policy

description: Supplementary Material 2
sj-pdf-1-cmp-10.1177_07388942231172754 - Supplemental material for Threat perceptions, loyalties and attitudes towards peace: The effects of civilian victimization among Syrian refugees in Turkey
Creators: name: Fabbe, Kristin
name: Hazlett, Chad
name: Sinmazdemir, Tolga
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: 220104 Human Rights and Justice Issues
subject: FOS: Philosophy, ethics and religion
subject: 160607 International Relations
subject: FOS: Political science

description: Supplemental material, sj-pdf-1-cmp-10.1177_07388942231172754 for Threat perceptions, loyalties and attitudes towards peace: The effects of civilian victimization among Syrian refugees in Turkey by Kristin Fabbe, Chad Hazlett and Tolga Sinmazdemir in Conflict Management and Peace Science
An improved genome reference for the African cichlid, Metriaclima zebra
Creators: name: Conte, Matthew A.
name: Kocher, Thomas D.
Publisher: name: Digital Repository at the University of Maryland
Year: 2015
Subjects: African cichlid fish
Genome assembly
Pacific Biosciences SMRT sequencing
Transposable elements

description: Funding for Open Access provided by the UMD Libraries Open Access Publishing Fund.
description: Background: Problems associated with using draft genome assemblies are well documented and have become more pronounced with the use of short read data for de novo genome assembly. We set out to improve the draft genome assembly of the African cichlid fish, Metriaclima zebra, using a set of Pacific Biosciences SMRT sequencing reads corresponding to 16.5x coverage of the genome. Here we characterize the improvements that these long reads allowed us to make to the state-of-the-art draft genome previously assembled from short read data. Results: Our new assembly closed 68 % of the existing gaps and added 90.6Mbp of new non-gap sequence to the existing draft assembly of M. zebra. Comparison of the new assembly to the sequence of several bacterial artificial chromosome clones confirmed the accuracy of the new assembly. The closure of sequence gaps revealed thousands of new exons, allowing significant improvement in gene models. We corrected one known misassembly, and identified and fixed other likely misassemblies. 63.5 Mbp (70 %) of the new sequence was classified as repetitive and the new sequence allowed for the assembly of many more transposable elements. Conclusions: Our improvements to the M. zebra draft genome suggest that a reasonable investment in long reads could greatly improve many comparable vertebrate draft genome assemblies.
sj-docx-1-ldx-10.1177_00222194231215016 – Supplemental material for Empowering Schools to Implement Effective Research-Based Reading Remediation Delivers Long-Lasting Improvements to Children’s Reading Trajectories
Creators: name: Panda, Erin J.
name: Woehrle, Trisha
name: Frijters, Jan C.
name: Moules, Rhonda
name: Zolis, Sonia
name: Edwards, Edie
name: Steinbach, Karen A.
name: De Palma, Maria
name: Lovett, Maureen W.
Publisher: name: SAGE Journals
Year: 2023
Subjects: Education
Psychology not elsewhere classified
Special Education and Disability

description: Supplemental material, sj-docx-1-ldx-10.1177_00222194231215016 for Empowering Schools to Implement Effective Research-Based Reading Remediation Delivers Long-Lasting Improvements to Children’s Reading Trajectories by Erin J. Panda, Trisha Woehrle, Jan C. Frijters, Rhonda Moules, Sonia Zolis, Edie Edwards, Karen A. Steinbach, Maria De Palma and Maureen W. Lovett in Journal of Learning Disabilities
sj-docx-1-tam-10.1177_17588359231220516 – Supplemental material for TQB2450 in patients with advanced malignant tumors: results from a phase I dose-escalation and expansion study
Creators: name: Xue, Junli
name: Xue, Liqiong
name: Tang, Wenbo
name: Ge, Xiaoxiao
name: Zhao, Wei
name: Li, Qun
name: Peng, Wei
name: Dai, Congqi
name: Guo, Ye
name: Li, Jin
Publisher: name: SAGE Journals
Year: 2024
Subjects: Oncology and Carcinogenesis not elsewhere classified
Aged Health Care
Pharmacology and Pharmaceutical Sciences not elsewhere classified
Respiratory Diseases

description: Supplemental material, sj-docx-1-tam-10.1177_17588359231220516 for TQB2450 in patients with advanced malignant tumors: results from a phase I dose-escalation and expansion study by Junli Xue, Liqiong Xue, Wenbo Tang, Xiaoxiao Ge, Wei Zhao, Qun Li, Wei Peng, Congqi Dai, Ye Guo and Jin Li in Therapeutic Advances in Medical Oncology
Additional file 1 of Risk analysis of the association between different hemoglobin glycation index and poor prognosis in critical patients with coronary heart disease-A study based on the MIMIC-IV database
Creators: name: Wei, Xing
name: Chen, Xinghua
name: Zhang, Zhipeng
name: Wei, Jing
name: Hu, Ben
name: Long, Nv
name: Feng, Jun
name: Luo, Chunmiao
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Supplementary Material 1
Amodal Visual Scene Representations With and Without Geometry
Creators: name: Harley, Adam
Publisher: name: Carnegie Mellon University
Year: 2022
Subjects: subject: 80104 Computer Vision
subject: FOS: Computer and information sciences

description: Most computer vision models in deployment today describe the pixels of images. This does not suffice, because images are only projections of the scene in front of the camera. In this thesis we build representations that attempt to describe the scene itself. We call these representations “amodal” (i.e., without modality), emphasizing the fact that they describe elements of the scene for which we have no sensory input. We present two methods for amodal visual scene representation. The first focuses on modelling space, and proposes geometry-based methods for lifting images into 3D maps, where the objects are complete, despite partial occlusions in the imagery. We show that this representation allows for self-supervised learning from multi-view data, and yields state-of-the- art results as a perception system for autonomous vehicles, where the goal is to estimate a “bird’s eye view” semantic map from multiple sensors. The second method focuses on modelling time, and proposes geometry-free methods for tracking image elements through partial and full occlusions across a video. Using learned temporal priors and within inference optimization, we show that our model can track points across outperform flow-based and feature-matching methods on fine-grained multi-frame correspondence tasks.
Additional file 1 of An integrated framework for prognosis prediction and drug response modeling in colorectal liver metastasis drug discovery
Creators: name: Zhou, Xiuman
name: Qian, Yuzhen
name: Ling, Chen
name: He, Zhuoying
name: Shi, Peishang
name: Gao, Yanfeng
name: Sui, Xinghua
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer

description: Supplementary Material 1
Additional file 2 of An integrated framework for prognosis prediction and drug response modeling in colorectal liver metastasis drug discovery
Creators: name: Zhou, Xiuman
name: Qian, Yuzhen
name: Ling, Chen
name: He, Zhuoying
name: Shi, Peishang
name: Gao, Yanfeng
name: Sui, Xinghua
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer

description: Supplementary Material 2
Fostering A Transition Towards Responsible Research And Innovation – Reflecting On The Hidden Part Of The Iceberg.
Creators: name: Deblonde, Marian
Publisher: name: Zenodo
Year: 2018
Subjects: RRI, Function, purpose and paradoxes of research and innovation systems, optimisation and substitution, evidence and objectivity, sustainability and resilience.

description: Systems thinking is a transdisciplinary framework for seeing interrelationships rather than things, for seeing patterns of change rather than static snapshots, for being aware of how our mental models shape our belief systems. One systems thinking model that is helpful for understanding global issues is the iceberg model. (http://www.nwei.org/resources/iceberg/ consulted on 30-03-2016).

The Iceberg model consists of several levels. The mental model level is the ‘hidden part of the iceberg’. It consists of the know-how, paradigms, ‘attitudes, beliefs, morals, expectations and values that allow structures to continue functioning as they are. These are the beliefs that we often learn subconsciously from our society or family and are likely to be unaware of’ (http:/ /www.nwei.org/resources/iceberg/, consulted on 30-03-2016). With respect to the R&I system, the mental model refers to attitudes, beliefs, morals, expectations and values that influence the framing of science, innovation and sustainability. Benessia and Funtowicz point to paradoxical intrinsic loops in this approach. We argue that awareness of these intrinsic paradoxes is a precondition to allow for a transformation of current R&I systems into co-RRI systems.
Text Simplification In Rri.
Creators: name: Bautista, Susana
Publisher: name: Zenodo
Year: 2018

description: Responsible Research and Innovation (RRI) entails doing science, information and communication with society and for society carrying out an involvement of society during the process of research and innovation.

Our interests converge towards the development of interfaces based on language for modern day information technologies applications for modifying or finding information, issuing commands, or present output results in a way easy to understand.

In this proposal, we focus on natural language processing, in particular in the text simplification process to transform a text into a similar text that is easier to read. To do this, one has to identify what causes difficulties to readers and define different transformations, mainly aimed at syntactic and lexical constructions that can be applied to the original text to generate a simplified version.

The way of writing or presenting information can exclude many people, especially those who have problems to read and write or to understand. There are different factors as for example limited cultural education, people have cognitive problems or another disability, people with social problems or people whose mother tongue is not the official language of their adoption country which can cause problems. In particular, there are specific groups like deaf people, autistic people, elderly or people with language disorders such as aphasia or dyslexia, who have problems when they access information. In order to make information accessible to all people, we must keep in mind the diversity of the people who will access it.

Our proposed work on automatic simplification of numerical expressions, is a computational implementation based on a generic model of the process. We present the theoretical bases for text simplification along with a generic model, and show the experimental identification of simplification strategies on numerical expressions to decide what kind of changes need to be implemented for our automatic approaches. We have developed and implemented two systems to simplify numerical expressions in English and Spanish that follow the generic model and used the simplification strategies identified in the experimental studies. For both systems an evaluation with experts has been carried out.
IMPROVEMENT OF PRODUCTION RESERVE MANAGEMENT MODELS IN COTTON-TEXTILE CLUSTERS: ERP-systems
Creators: name: Nasimov, Baxtiyor
Publisher: name: Zenodo
Year: 2024

description: The integration of advanced Enterprise Resource Planning (ERP) systems plays a pivotal role in optimizing resource allocation, improving supply chain coordination, and ensuring the seamless management of inventory. This paper explores the potential for improving existing production reserve management models within cotton-textile clusters through the adoption of ERP systems. By analyzing current challenges, such as fluctuating raw material availability, demand forecasting inaccuracies, and limited synchronization between production units, the study proposes a framework for integrating ERP solutions to address these issues.
Linguistic Influences on Disfluencies in Typically-Developing French-English Bilingual Children
Creators: name: Azem, Andrea Sabrije
Publisher: name: Digital Repository at the University of Maryland
Year: 2018
Subjects: subject: Speech therapy
subject: Bilingualism
subject: Children
subject: Disfluency
subject: Language
subject: Typically-Developing

description: The connections among language proficiency, language complexity, and fluency have been well-researched in both typical and atypical monolingual populations. Though previous work indicates that bilingual individuals often demonstrate different patterns of disfluency in each of their languages, how or why this happens is largely unknown. Relationships among fluency, language proficiency, and language complexity were examined using the narrative and conversational speech samples of 9 French-English bilingual children. Mean length of utterance in words (MLUw) and percent grammatical utterances (PGU) were shown to strongly relate to rates of total disfluency. The proportion of disfluent function words across samples differed significantly from the proportion of disfluent content words, although rates of disfluency on individual parts of speech did not differ significantly between French and English. Further work is necessary in order to better understand the extent to which language proficiency and linguistic complexity interact and affect disfluency across bilingual populations.
sj-docx-1-bjo-10.1177_03080226221126893 – Supplemental material for Engaging with nature and the outdoors: A scoping review of therapeutic applications in contemporary occupational therapy
Creators: name: Firby, Heather
name: Raine, Rosi
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 111708 Health and Community Services
subject: FOS: Health sciences
subject: 110314 Orthopaedics
subject: FOS: Clinical medicine
subject: 110604 Sports Medicine
subject: 111702 Aged Health Care

description: Supplemental material, sj-docx-1-bjo-10.1177_03080226221126893 for Engaging with nature and the outdoors: A scoping review of therapeutic applications in contemporary occupational therapy by Heather Firby and Rosi Raine in British Journal of Occupational Therapy
Additional file 2 of KAT2A-mediated succinylation modification of notch1 promotes the proliferation and differentiation of dental pulp stem cells by activating notch pathway
Creators: name: Ye, Longwei
name: Yu, Zeqin
name: He, Lin
name: Yuan, Jie
name: Zhang, Xiaodan
name: Li, Lei
name: Huang, Xin
name: Ma, Yanyan
name: Zhang, Lei
Publisher: name: figshare
Year: 2024
Subjects: Biochemistry
Cell Biology
Molecular Biology
Biological Sciences not elsewhere classified
Developmental Biology

description: Supplementary Material 2
On the effects of external stresses on protein conformation
Creators: name: Budi, Akin
Publisher: name: RMIT University
Year: 2024

description: The use of electromagnetic devices such as microwave ovens and mobile phones has certainly brought convenience to our lives. At the same time, the proliferation of said devices has increased public awareness of the potential health hazards. It is generally assumed that there is little or no risk associated with the use of electromagnetic devices, based on the small amount of power associated with those devices. However, case studies on animals indicate that the risk cannot be entirely ruled out. It has long been known that proteins are sensitive to stress, arising from various sources such as temperature, chemical, pressure, and changes in pH condition. In all of these cases, the protein exhibits clear signs of damage and distress, which range from slight unfolding to complete loss of structure. Frequently, the damage to the protein is alleviated by refolding, either by itself or by the aid of molecular chaperones. However, if the damage to the protein is too great, the protein will generally undergo proteolysis. Opinion has been divided over the implication of prolonged use of electromagnetic devices to human health. Studies conducted on animals so far have given conflicting results. The studies on the separate components, electric and magnetic fields, also give inconclusive results. This indicates that our understanding on how electric and magnetic fields interact with biological matter is incomplete. In this project, we use molecular dynamics to explore the behaviour of two forms of insulin chain-B, isolated and monomeric (in the presence of chain-A with all disulfide bonds intact), at ambient conditions and under the influence of various stress. Specifically, we focus our attention to thermal stress and electric field stress. The electric field stress considered in this study takes several forms: static and oscillating with three different frequencies. These fields have strength ranging from 1806 V/m to 109 V/m. By performing molecular dynamics simulations totalling over 500 ns, we have gained valuable insights into the effects of elevated temperature and electric field on insulin chain-B. We observed differences in the damage mechanisms by the application of static electric field and oscillating field. The application of static fields restricts the conformational freedom of a protein, whereas the application of oscillating fields increases the mobility and flexibility of the protein, similar to the effect of thermal stress. Both of these interfere with the normal behaviour of a protein. We have also observed frequency-dependent effects, with low frequency fields having static field-like characteristics in damage mechanism.
Discourse and power: a study of change in the managerialised university in Australia
Creators: name: Lines, Robyn
Publisher: name: RMIT University
Year: 2024

description: The literature concerning work identities within universities is limited and focussed upon the ways academic staff construct their identities and the impacts these have upon their approaches to change. Similar studies for the range of differentiated roles that characterise the newly managerialised university are not available. The first stage of the research, therefore, was to develop a categorisation of the ways in which senior managers, line managers, support staff and academic staff construct their identities at work. This categorisation was created by bringing together the experiences of change of fifty three staff from five similar Australian universities, reported in interviews, with a review of the discourses widely available within the university sector (Deetz 1992; du Gay 1996a; Knights & Morgan 1991; Marginson 2000; Readings 1996) to produce thirteen different classifications associated with different roles. These categories described as case study one provide an initial framework for making sense of the different viewpoints expressed by staff in interviews and a language for understanding w hat particular actions might mean to the organisational members making them. As such it provides a starting point or tool for analysis and makes an original contribution to understanding change within universities. The second stage of this research examined the dynamics of a teaching change project and the interactions between differently constructed work identities it entailed. This was undertaken through an ethnographic study of a change project in process. The ethnography was supplemented by interviews with participants at the conclusion of the project. The analysis of the ethnography combined the first theoretical focus on constructed identity with concepts of power and their forms within organisations (Foucault 1998; Clegg 1989a; Callon 1986) to take account of the hierarchical organisation of the university and the differentiated organisational roles of participants in the change project.
Effect of electrical energy on the efficacy of biofilm treatment using the bioelectric effect
Creators: name: Kim, Young Wook
name: Subramanian, Sowmya
name: Gerasopoulos, Konstantinos
name: Ben-Yoav, Hadar
name: Wu, Hsuan-Chen
name: Quan, David
name: Carter, Karen
name: Meyer, Mariana T.
name: Bentley, William E.
name: Ghodssi, Reza
Publisher: name: Digital Repository at the University of Maryland
Year: 2015

description: Funding for Open Access provided by the UMD Libraries Open Access Publishing Fund.
description: BACKGROUND/OBJECTIVES: The use of electric fields in combination with small doses of antibiotics for enhanced treatment of biofilms is termed the ‘bioelectric effect’ (BE). Different mechanisms of action for the AC and DC fields have been reported in the literature over the last two decades. In this work, we conduct the first study on the correlation between the electrical energy and the treatment efficacy of the bioelectric effect on Escherichia coli K-12 W3110 biofilms. METHODS: A thorough study was performed through the application of alternating (AC), direct (DC) and superimposed (SP) potentials of different amplitudes on mature E. coli biofilms. The electric fields were applied in combination with the antibiotic gentamicin (10 μg/ml) over a course of 24 h, after the biofilms had matured for 24 h. The biofilms were analysed using the crystal violet assay, the colony-forming unit method and fluorescence microscopy. RESULTS: Results show that there is no statistical difference in treatment efficacy between the DC-, AC- and SP-based BE treatment of equivalent energies (analysis of variance (ANOVA) P > 0.05) for voltages < 1 V. We also demonstrate that the efficacy of the BE treatment as measured by the crystal violet staining method and colony-forming unit assay is proportional to the electrical energy applied (ANOVA P < 0.05). We further verify that the treatment efficacy varies linearly with the energy of the BE treatment (r2 = 0.984). Our results thus suggest that the energy of the electrical signal is the primary factor in determining the efficacy of the BE treatment, at potentials less than the media electrolysis voltage. CONCLUSIONS: Our results demonstrate that the energy of the electrical signal, and not the type of electrical signal (AC or DC or SP), is the key to determine the efficacy of the BE treatment. We anticipate that this observation will pave the way for further understanding of the mechanism of action of the BE treatment method and may open new doors to the use of electric fields in the treatment of bacterial biofilms.
Additional file 3 of KAT2A-mediated succinylation modification of notch1 promotes the proliferation and differentiation of dental pulp stem cells by activating notch pathway
Creators: name: Ye, Longwei
name: Yu, Zeqin
name: He, Lin
name: Yuan, Jie
name: Zhang, Xiaodan
name: Li, Lei
name: Huang, Xin
name: Ma, Yanyan
name: Zhang, Lei
Publisher: name: figshare
Year: 2024
Subjects: Biochemistry
Cell Biology
Molecular Biology
Biological Sciences not elsewhere classified
Developmental Biology

description: Supplementary Material 3
Physical Interaction and Manipulation of the Environment using Aerial Robots
Creators: name: Keipour, Azarakhsh
Publisher: name: Carnegie Mellon University
Year: 2022
Subjects: subject: 90602 Control Systems, Robotics and Automation
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: The physical interaction of aerial robots with their environment has countless potential applications and is an emerging area with many open challenges. Fully-actuated multirotors have been introduced to tackle some of these challenges. They provide complete control over position and orientation and eliminate the need for attaching a multi-DoF manipulation arm to the robot. However, there are still several open problems before they can be used in real-world applications. Researchers have introduced some methods for the physical interaction of fully-actuated multirotors in limited settings. Their experiments primarily use prototype-level software without an efficient path to integrating these methods into real-world applications. This thesis describes a new controller design that provides a cost-effective solution for integrating these robots with the existing software and hardware flight systems for real-world applications. It further expands the controller to physical interaction applications to show its flexibility and effectiveness. On the other hand, the existing control approaches for fully-actuated robots assume conservative limits for the thrusts and moments available to the robot. Using conservative assumptions for these already-inefficient robots makes their interactions even less optimal and may even result in many feasible physical interaction applications becoming infeasible. This work proposes a real-time method for estimating the complete set of instantaneously available forces and moments that robots can use to optimize their physical interaction performance. Finally, many real-world applications where aerial robots can improve the existing manual solutions deal with deformable objects. However, the perception of deformable objects and planning for their manipulation is still challenging. Additionally, no studies have been performed to analyze the requirements of aerial tasks that involve deformable objects. This research explores how aerial physical interaction can be extended to deformable objects. It provides a detection method suitable for manipulating deformable one-dimensional objects and introduces a new perspective on planning the manipulation of these objects. It further studies the viability of working with such objects for aerial manipulators.
Pathways of scientific input into intergovernmental negotiations: a new agreement on marine biodiversity
Creators: name: Tessnow-von Wysocki, Ina
name: Vadrot, ABM
Publisher: name: University of Wollongong
Year: 2025
Subjects: classificationCode: 4803
subject: International and comparative law
classificationCode: 4408
subject: Political science
subject: FOS: Political science
classificationCode: 4802
subject: Environmental and resources law
classificationCode: 4407
subject: Policy and administration
classificationCode: 48
subject: Law and legal studies

description: A new legally binding agreement for the conservation and sustainable use of marine biodiversity beyond national jurisdiction (BBNJ) was adopted by consensus on 19th June, 2023. Setting new regulations and filling regulatory gaps of the United Nations Convention on the Law of the Sea are expected to be informed by “best available science”. It is critical to understand how science entered the negotiations, which defined the global scientific knowledge base of decision-makers. This paper presents various pathways over which scientific input entered the BBNJ negotiations, using empirical data, collected through collaborative event ethnography, including participant observation and semi-structured interviews at the BBNJ negotiation site. Results show that scientific input in the BBNJ negotiations was not systematic and transparent but dependent on (a) available national scientific capacity, (b) financial resources, (c) established contacts and (d) active involvement of actors. Results of the study call for formalised science-policy interfaces, initiated by the UN Secretariat to guarantee a global knowledge base for decision-making. Keywords: international negotiations; United Nations; marine biodiversity; BBNJ; ocean protection; science-policy interfaces.
Infrastructure electronic numbering implementation in Australia
Creators: name: Jammulamadaka, Ananda
Publisher: name: RMIT University
Year: 2024

description: VoIP is becoming the dominant approach for telephony and this growth will continue with the upcoming introduction of 4G mobile wireless and fibre to the home networks. With the growing demand for VoIP and increased VoIP traffic, it is important to implement a system that provides interoperability between the existing telephony numbering system and the IP network device addresses. Infrastructure ENUM is one approach that may be used. This paper examines the Infrastructure ENUM implementation in Australia.
Additional file 1 of Introduction of protein vaccine candidate based on AP65, AP33, and α-actinin proteins against Trichomonas vaginalis parasite: an immunoinformatics design
Creators: name: Ghasemi Nezhad, Forozan
name: Karmostaji, Afsaneh
name: Sarkoohi, Parisa
name: Shahbazi, Behzad
name: Gharibi, Zahra
name: Negahdari, Batul
name: Ahmadi, Khadijeh
Publisher: name: figshare
Year: 2024
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 1: Table S1. Selected Linear B cell Epitopes from Trichomonas vaginalis.
sj-docx-1-amp-10.1177_25152459221120427 – Supplemental material for Beyond Random Effects: When Small-Study Findings Are More Heterogeneous
Creators: name: Stanley, T. D.
name: Doucouliagos, Hristos
name: Ioannidis, John P. A.
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: FOS: Clinical medicine

description: Supplemental material, sj-docx-1-amp-10.1177_25152459221120427 for Beyond Random Effects: When Small-Study Findings Are More Heterogeneous by T. D. Stanley, Hristos Doucouliagos and John P. A. Ioannidis in Advances in Methods and Practices in Psychological Science
Additional file 2 of Introduction of protein vaccine candidate based on AP65, AP33, and α-actinin proteins against Trichomonas vaginalis parasite: an immunoinformatics design
Creators: name: Ghasemi Nezhad, Forozan
name: Karmostaji, Afsaneh
name: Sarkoohi, Parisa
name: Shahbazi, Behzad
name: Gharibi, Zahra
name: Negahdari, Batul
name: Ahmadi, Khadijeh
Publisher: name: figshare
Year: 2024
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 2: Table S2. Selected High-Affinity Binding human MHC Class II Epitopes from Trichomonas vaginalis.
Supplemental Material - Intravaginal dehydroepiandrosterone for genitourinary symptoms of the menopause: Is the evidence sufficient?
Creators: name: Kearley-Shiers, Katherine
name: Holloway, Debra
name: Bruce, Deborah
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 111402 Obstetrics and Gynaecology
subject: FOS: Clinical medicine

description: Supplemental Material for Intravaginal dehydroepiandrosterone for genitourinary symptoms of the menopause: Is the evidence sufficient? by Katherine Kearley-Shiers, Debra Holloway, Janice Rymer¸ Deborah Bruce in Post Reproductive Health
MPEC 2024-H37 : 2023 MJ20
Creators: name: Minor Planet Center Staff
Publisher: name: The Minor Planet Center
Year: 2024
Subjects: subject: Small Solar System bodies
valueUri: http://astrothesaurus.org/uat/1469
subject: 2023 MJ20

description: The Minor Planet Electronic Circulars contain information on unusual minor planets, routine data on comets and natural satellites, and occasional editorial announcements.  They are published on behalf of Division F of the International Astronomical Union by the Minor Planet Center, Smithsonian Astrophysical Observatory, Cambridge, MA 02138, U.S.A.
sj-docx-1-nah-10.1177_02601060221129440 - Supplemental material for The prevalence of excess weight among Vietnamese adults: A pooled analysis of 58 studies with more 430 thousand participants over the last three decades
Creators: name: Phuc, Tran Thai
name: Duc, Tran Quang
name: Quynh Chi, Vu Thi
name: Quang, Phan Ngoc
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 111199 Nutrition and Dietetics not elsewhere classified
subject: FOS: Health sciences

description: Supplemental material, sj-docx-1-nah-10.1177_02601060221129440 for The prevalence of excess weight among Vietnamese adults: A pooled analysis of 58 studies with more 430 thousand participants over the last three decades by Tran Thai Phuc, Tran Quang Duc, Vu Thi Quynh Chi and Phan Ngoc Quang in Nutrition and Health
Additional file 3 of Introduction of protein vaccine candidate based on AP65, AP33, and α-actinin proteins against Trichomonas vaginalis parasite: an immunoinformatics design
Creators: name: Ghasemi Nezhad, Forozan
name: Karmostaji, Afsaneh
name: Sarkoohi, Parisa
name: Shahbazi, Behzad
name: Gharibi, Zahra
name: Negahdari, Batul
name: Ahmadi, Khadijeh
Publisher: name: figshare
Year: 2024
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 3: S3. The final vaccine sequence.
Lectura multimodal y escritura creativa a partir del álbum ilustrado para la formación docente/ Multimodal reading and creative writing through picturebooks in preservice teacher education
Creators: name: Martínez-Carratalá, Francisco Antonio
name: Miras, Sebastián
name: Rovira-Collado, José
Publisher: name: Zenodo
Year: 2024

description: Anexo para la investigación Lectura multimodal y escritura creativa a partir del álbum ilustrado para la formación docente/ Multimodal reading and creative writing through picturebooks in preservice teacher education
sj-docx-2-whe-10.1177_17455057221133685 – Supplemental material for Women experiencing homelessness in Dire Dawa city: Coping mechanisms and suggestions to stakeholder, 2021
Creators: name: Assegid, Daniel Tadesse
name: Girma, Meklit
name: Hailu, Mickiale
name: Mohammed, Aminu
name: Amsalu, Sewmehon
name: Kasse, Nigus
name: Weldamanuel, Tadesse
name: Mellese, Dawit
name: Solomon, Milkiyas
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 111402 Obstetrics and Gynaecology
subject: FOS: Clinical medicine

description: Supplemental material, sj-docx-2-whe-10.1177_17455057221133685 for Women experiencing homelessness in Dire Dawa city: Coping mechanisms and suggestions to stakeholder, 2021 by Daniel Tadesse Assegid, Meklit Girma, Mickiale Hailu, Aminu Mohammed, Sewmehon Amsalu, Nigus Kasse, Tadesse Weldamanuel, Dawit Mellese and Milkiyas Solomon in Women’s Health
Supplementart files of Yue et, al. 2022
Creators: name: YUE, LEI
Publisher: name: figshare
Year: 2022
Subjects: subject: 110323 Surgery
subject: FOS: Clinical medicine

description: The supplementary files of Investigation of Optimal Dosage of Intrathecal Morphine for Orthopedic Surgery: A Systematic Review and Meta-analysis of Randomized Controlled Trials
 Supplement 1. Chinese search results Supplement 2. GRADE assessment, Egger's test, and Begg's test results. Supplement 3. Sensitivity analyses and funnel plots.
Detecting small structural variants in amplicon-based NGS data – an evaluation of ten algorithms
Creators: name: Wöste, Marius
name: Sandmann, Sarah
name: Graaf, Aniek De
name: Reijden, Bert Van Der
name: Jansen, Joop
name: Dugas, Martin
Publisher: name: F1000Research
Year: 2017

description: With the development of next-generation sequencing (NGS), genetic sequencing became applicable for many research areas, cancer related topics in particular. Targeted sequencing enables researchers to analyze selected genomic regions of interest with extremely high coverages, thus enabling analysis of variants with low allelic frequencies. However, using an amplicon-based sequencing strategy yields reads with positions constrained by the amplicons in use. These contraints potentially hinder structural variant (SV) detection within these amplicons since most SV detection algorithms were designed for and evaluated on whole genome or whole exome datasets.

We simulate a paired-end, amplicon-based dataset with small (15bp to 70bp) SVs to evaluate performance of ten common SV detection algorithms for amplicon-based NGS datasets: Socrates, BreaKmer, delly2, gustaf, SoftSV, CREST, Pindel, Sprites, BreakDancer and SeekSV. The simulated coverage is based on an amplicon-based dataset covering 111 patients diagnosed with myelodysplastic syndromes (MDS). The covered target region is ~125 kbp in length. We simulate deletions, inversions and tandem duplications as these are the most common types of SVs called by different tools. Since amplicon-based strategies are usually employed to capture variants with low allelic frequencies, SVs with allelic frequencies between 5% and 35% are simulated. Sensitivity, positive predictive value (PPV) and required computational resources are evaluated.

Gustaf and Pindel show sensitivity of ~55%. All other algorithms show sensitivity <20%, with some algorithms calling no SVs at all. However, PPV of the tools successfully detecting the simulated SVs was >75% in all cases. Run time varies between a few minutes and several hours.
sj-docx-1-jnm-10.1177_10949968221129817 - Supplemental material for Content That Engages Your Customers: The Role of Brand Congruity and Promotions in Social Media
Creators: name: Montaguti, Elisa
name: Valentini, Sara
name: Vecchioni, Federica
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 150402 Hospitality Management
subject: FOS: Economics and business

description: Supplemental material, sj-docx-1-jnm-10.1177_10949968221129817 for Content That Engages Your Customers: The Role of Brand Congruity and Promotions in Social Media by Elisa Montaguti, Sara Valentini, and Federica Vecchioni in Journal of Interactive Marketing
sj-docx-2-tia-10.1177_23312165221130584 - Supplemental material for Hearing aid Experiences of Adult Hearing aid Owners During and After Fitting: A Systematic Review of Qualitative Studies
Creators: name: Oosthuizen, Ilze
name: Manchaiah, Vinaya
name: Launer, Stefan
name: Swanepoel, De Wet
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 111708 Health and Community Services
subject: FOS: Health sciences
subject: 110315 Otorhinolaryngology
subject: FOS: Clinical medicine

description: Supplemental material, sj-docx-2-tia-10.1177_23312165221130584 for Hearing aid Experiences of Adult Hearing aid Owners During and After Fitting: A Systematic Review of Qualitative Studies by Ilze Oosthuizen, Vinaya Manchaiah, Stefan Launer and De Wet Swanepoel in Trends in Hearing
Simulation of arterial stenosis incorporating fluid-structural interaction and non-Newtonian blood flow
Creators: name: Chan, Weng Yew
Publisher: name: RMIT University
Year: 2024

description: The aim of this study is to investigate the fluid-structural response to pulsatile Newtonian and non-Newtonian blood flow through an axisymmetric stenosed vessel using FLOTRAN and ANSYS. This is to provide a basic understanding of atherosclerosis. The flow was set to be laminar and follows a sinusoidal waveform. The solid model was set to have isotropic elastic properties. The Fluid-Structural Interaction (FSI) coupling was two-way and iterative. Rigid and Newtonian cases were investigated to provide an understanding on the effects of incorporating FSI into the model. The wall expansion was found to decrease the axial velocity and increase the recirculation effects of the flow. To validate the models and methods used, the results were compared with the study by Lee and Xu [2002] and Ohja et al [1989]. Close comparisons were achieved, suggesting the models used were valid. Two non-Newtonian models were investigated with FSI: Carreau and Power Law models. The Carreau model fluid behaviour was very close to the Newtonian model. The Power Law model produced significant difference in viscosity, velocity and wall shear stress distributions. Pressure distribution for all models was similar. In order to quantify the changes, Importance Factor (IG) was introduced to determine the overall non-Newtonian effects at two regions: the entire flow model and about the vessel wall. The Carreau model showed reasonable values of IG whereas the Power Law model showed excessive values. Transient and geometrical effects were found to affect the Importance Factor. The stress distributions for all models were found to be similar. Highest stress occurred at the shoulders of the stenosis where a stress concentration occurred due to sharp corners of the geometry and large bending moments. The highest stresses were in the axial direction. Notable circumferential stress was found at the ends of the vessel. Carreau model produced slightly higher stresses than the other models. Wall stresses were found to be primarily influenced by internal pressure, rather than wall shear stresses.
Lectura multimodal y escritura creativa a partir del álbum ilustrado para la formación docente/ Multimodal reading and creative writing through picturebooks in preservice teacher education
Creators: name: Miras, Sebastián
name: Rovira-Collado, José
Publisher: name: Zenodo
Year: 2024

description: Anexo para la investigación Lectura multimodal y escritura creativa a partir del álbum ilustrado para la formación docente/ Multimodal reading and creative writing through picturebooks in preservice teacher education
sj-docx-1-jpx-10.1177_23743735221133638 - Supplemental material for Telephone Clinics During the Covid-19 Pandemic—The Experiences of Interstitial Lung Disease Patients and Their Carers
Creators: name: Gillett, Mia
name: Hope-Gill, Ben
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 111708 Health and Community Services
subject: FOS: Health sciences
subject: Medicine

description: Supplemental material, sj-docx-1-jpx-10.1177_23743735221133638 for Telephone Clinics During the Covid-19 Pandemic—The Experiences of Interstitial Lung Disease Patients and Their Carers by Mia Gillett and Ben Hope-Gill in Journal of Patient Experience