cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Economic Cost of Major Foodborne Illnesses Increased $2 Billion From 2013 to 2018
Creators: name: Hoffmann, Sandra
name: Ahn, Jae-Wan
name: Hoffmann, Sandra
name: Ahn, Jae-Wan
Publisher: name: Unknown
Year: 2021
Subjects: subject: Environmental Economics and Policy
subject: Financial Economics
subject: Food Consumption/Nutrition/Food Safety
subject: Health Economics and Policy
subject: Public Economics
subject: Foodborne illnesses
subject: Economic costs trend
subject: Healthcare sector
subject: Cost of illness estimates
subject: Pathogens

description: Foodborne illnesses from different pathogens (bacteria, viruses, and parasites) cause a variety of health effects, ranging from a few days of diarrhea to more serious outcomes such as kidney failure, cognitive impairment, and even death. Since the mid-1990s, the USDA, Economic Research Service (ERS) has estimated the economic cost of 15 major foodborne illnesses. Monetary measures of these health effects provide a common metric to compare impacts of various pathogens, a way to aggregate impacts across illnesses, and a means of comparing the costs of experiencing those illnesses with the costs of preventing them.
Solution to the B -> pi K Puzzle in a Flavor-Changing Z' Model
Creators: name: Barger, Vernon
name: Chiang, Cheng-Wei
name: Langacker, Paul
name: Lee, Hye-Sung
Publisher: name: arXiv
Year: 2004
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Recent experiments suggest that certain B -> pi K branching ratios are inconsistent with the standard model expectations. We show that a flavor-changing Z' provides a solution to the problem. Electroweak penguin amplitudes are enhanced by the Z' boson for select parameters. We discuss implications for the Z' mass and its couplings to the standard model fermions. We also show that the solution is consistent with constraints from the CP asymmetries of the B -> phi K_S decay.
description: 7 pages, 5 figures, to be submitted to Phys. Lett. B; references updated
Additional file 3 of Aberrant expression of collagen type X in solid tumor stroma is associated with EMT, immunosuppressive and pro-metastatic pathways, bone marrow stromal cell signatures, and poor survival prognosis
Creators: name: Famili-Youth, Elliot H. H.
name: Famili-Youth, Aryana
name: Yang, Dongfang
name: Siddique, Ayesha
name: Wu, Elizabeth Y.
name: Liu, Wenguang
name: Resnick, Murray B.
name: Chen, Qian
name: Brodsky, Alexander S.
Publisher: name: figshare
Year: 2025
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Hematology
subject: Plant Biology

description: Supplementary Material 3. Figure S3: The G.A.M.E. metric effectively proxies ColX module expression and improves sample stratification. (A–D) Relationship between ColX module eigengene (ME) expression and proportion of “Genes Above Median Expression” (G.A.M.E.) for (A) breast cancer, (B) pancreatic cancer, (C) male pancreatic cancer, and (D) female pancreatic cancer cohorts. Colored curves represent densities of ME (right) and G.A.M.E. (top) variables for each panel. Blue dotted lines indicate Jenks natural breakpoints defining 3 clusters (“low”,“medium”, and “high”). Spearman correlations (ρ) are shown for each panel.
Exploring True Test Overfitting in Dynamic Automated Program Repair using Formal Methods
Creators: name: Amirfarhad Nilizadeh
name: Leavens, Gary T.
name: Xuan-Bach D. Le
name: Puasuareanu, Corina S.
name: Cok, David R.
Publisher: name: Zenodo
Year: 2021
Subjects: Automated Program Repair (APR); test overfitting; formal methods;

description: Automated program repair (APR) techniques have shown a promising ability to generate patches that fix program bugs automatically. Typically such APR tools are dynamic in the sense that they find bugs by testing and they validate patches by running a program's test suite. Patches can also be validated manually. However, neither of these methods for validating patches can truly tell whether a patch is correct. Test suites are usually incomplete, and thus APR-generated patches may pass the tests but not be truly correct; in other words, the APR tools may be overfitting to the tests. The possibility of test overfitting leads to manual validation, which is costly, potentially biased, and can also be incomplete. Therefore, we must move past these methods to truly assess APR's overfitting problem. We aim to evaluate the test overfitting problem in dynamic APR tools using ground truth given by a set of programs equipped with formal behavioral specifications. Using these formal specifications and an automated verification tool, we found that there is definitely overfitting in the generated patches of seven well-studied APR tools, although many (about 59%) of the generated patches were indeed correct. Our study further points out two new problems that can affect APR tools: changes to the complexity of programs and numeric problems. An additional contribution is that we introduce the first publicly available data set of formally specified and verified Java programs, their test suites, and buggy variants, each of which has exactly one bug.
Exploring True Test Overfitting in Dynamic Automated Program Repair using Formal Methods
Creators: name: Amirfarhad Nilizadeh
name: Leavens, Gary T.
name: Xuan-Bach D. Le
name: Puasuareanu, Corina S.
name: Cok, David R.
Publisher: name: Zenodo
Year: 2021
Subjects: Automated Program Repair (APR); test overfitting; formal methods;

description: Automated program repair (APR) techniques have shown a promising ability to generate patches that fix program bugs automatically. Typically such APR tools are dynamic in the sense that they find bugs by testing and they validate patches by running a program's test suite. Patches can also be validated manually. However, neither of these methods for validating patches can truly tell whether a patch is correct. Test suites are usually incomplete, and thus APR-generated patches may pass the tests but not be truly correct; in other words, the APR tools may be overfitting to the tests. The possibility of test overfitting leads to manual validation, which is costly, potentially biased, and can also be incomplete. Therefore, we must move past these methods to truly assess APR's overfitting problem. We aim to evaluate the test overfitting problem in dynamic APR tools using ground truth given by a set of programs equipped with formal behavioral specifications. Using these formal specifications and an automated verification tool, we found that there is definitely overfitting in the generated patches of seven well-studied APR tools, although many (about 59%) of the generated patches were indeed correct. Our study further points out two new problems that can affect APR tools: changes to the complexity of programs and numeric problems. An additional contribution is that we introduce the first publicly available data set of formally specified and verified Java programs, their test suites, and buggy variants, each of which has exactly one bug.
Additional file 13 of The interactome of CLUH reveals its association to SPAG5 and its co-translational proximity to mitochondrial proteins
Creators: name: Hémono, Mickaële
name: Haller, Alexandre
name: Chicher, Johana
name: Duchêne, Anne-Marie
name: Ngondo, Richard Patryk
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 13:. Figure S7. Identification of CLUH proximal proteins in HCT116 cells using a TurboID time course approach.
- Uma Carta a Mestres Amigos -
Creators: name: Táriq Borges Godinho
Publisher: name: Zenodo
Year: 2021
Subjects: Poesia
Amizade
Homenagem
Amigos
Mestres

description: A personal work that I thought I would publish in honour of the people who were very important in my life, as well as in my training as a philosopher.
description: {"references": ["Il\u00edada de Homero, Volume I, de Haroldo de Campos."]}
The Virtual Monte Carlo
Creators: name: Hrivnacova, I.
name: Adamova, D.
name: Berejnoi, V.
name: Brun, R.
name: Carminati, F.
name: Fasso, A.
name: Futo, E.
name: Gheata, A.
name: Caballero, I. Gonzalez
name: Morsch, A.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Software Engineering (cs.SE)
subject: FOS: Computer and information sciences
subject: D.2.11

description: The concept of Virtual Monte Carlo (VMC) has been developed by the ALICE Software Project to allow different Monte Carlo simulation programs to run without changing the user code, such as the geometry definition, the detector response simulation or input and output formats. Recently, the VMC classes have been integrated into the ROOT framework, and the other relevant packages have been separated from the AliRoot framework and can be used individually by any other HEP project. The general concept of the VMC and its set of base classes provided in ROOT will be presented. Existing implementations for Geant3, Geant4 and FLUKA and simple examples of usage will be described.
description: Talk from the 2003 Computing in High Energy and Nuclear Physics (CHEP03), La Jolla, Ca, USA, March 2003, 8 pages, LaTeX, 6 eps figures. PSN THJT006. See http://root.cern.ch/root/vmc/VirtualMC.html
Additional file 4 of Aberrant expression of collagen type X in solid tumor stroma is associated with EMT, immunosuppressive and pro-metastatic pathways, bone marrow stromal cell signatures, and poor survival prognosis
Creators: name: Famili-Youth, Elliot H. H.
name: Famili-Youth, Aryana
name: Yang, Dongfang
name: Siddique, Ayesha
name: Wu, Elizabeth Y.
name: Liu, Wenguang
name: Resnick, Murray B.
name: Chen, Qian
name: Brodsky, Alexander S.
Publisher: name: figshare
Year: 2025
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Hematology
subject: Plant Biology

description: Supplementary Material 4. Figure S4: TCGA WGCNA module expression tracks differential activity of immune, transcription factor, and cancer-associated fibroblast signatures. (A–P) Mean pathway activation (by QuSAGE) of various gene sets in samples with high module expression relative to samples with low module expression for each WGCNA module and TCGA cohort. (A–D) Results for cancer immunome genesets in (A) breast cancer, (B) pancreatic cancer, (C) male pancreatic cancer, and (D) female pancreatic cancer cohorts. Gene sets within each block are ordered by significance in respective ColX module; see Figure 3B for focused comparison. (E–H) Results for transcription factor target lists in (E) breast cancer, (F) pancreatic cancer, (G) male pancreatic cancer, and (H) female pancreatic cancer cohorts. Gene sets within each block are ordered by effect size in respective ColX module; see Figure 3C for focused comparison. (I–P) Results for cancer-associated fibroblast (CAF) gene sets derived from (I–L) breast tumor scRNA-Seq data and (M–P) pancreas/other tumor scRNA-Seq data, in (I and M) breast cancer, (J and N) pancreatic cancer, (K and O) male pancreatic cancer, and (L and P) female pancreatic cancer cohorts. Gene sets within each block are ordered by significance in respective ColX module; see Figures 3D and 3E for focused comparison. See Methods section for sample grouping process (note the same procedure for calculating G.A.M.E. and assigning “low” and “high” labels was applied to each WGCNA module respectively). Significance values were corrected across each module individually (by rows). Significance values: *, p.adj < 0.05; **, p.adj < 0.01; ***, p.adj < 0.001; ****, p.adj < 0.0001.
Curvaton scenario with low scale inflation revisited
Creators: name: Postma, Marieke
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: In its simplest form the curvaton paradigm requires the Hubble parameter during inflation to be bigger than $10^8 \GeV$, but this bound may be evaded in non-standard settings. In the heavy curvaton scenario the curvaton mass increases significantly after the end of inflation. We reanalyze the bound in this set up, taking into account the upper bound on the curvaton mass from direct decay. We obtain $H_* > 10^8 \GeV$ if the mass increase occurs at the end of inflation, and $H_* > 10^{-14} \GeV$ if it occurs just before nucleosynthesis. We then discuss two implementations of the heavy curvaton. Parameters are constrained in these explicit models, and as a result even obtaining TeV scale inflation is hard to obtain.
description: 22 pages
Additional file 2 of Assessing health system challenges and opportunities for better noncommunicable disease outcomes: the case of Mauritius
Creators: name: Musango, Laurent
name: Timol, Maryam
name: Premduth Burhoo
name: Shaikh, Faisal
name: Donnen, Philippe
name: Joses Kirigia
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Computational Biology

description: Additional File 2. Criteria used for scoring coverage of NCD individual services.
Heliosheath Properties Measured from a Voyager 2 to Voyager 1 Transient
Creators: name: Rankin, Jamie S.
name: McComas, David J.
name: Richardson, John D.
name: Schwadron, Nathan A.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Space Physics (physics.space-ph)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: In mid-2012, a GMIR observed by Voyager 2 crossed through the heliosheath and collided with the heliopause, generating a pressure pulse that propagated into the very local interstellar medium. The effects of the transmitted wave were seen by Voyager 1 just 93 days after its own heliopause crossing. The passage of the transient was accompanied by long-lasting decreases in galactic cosmic ray intensities that occurred from ~2012.55 to ~2013.35 and ~2012.91 to ~2013.70 at Voyager 2 and Voyager 1, respectively. Omnidirectional (>20 MeV) proton-dominated measurements from each spacecraft's Cosmic Ray Subsystem reveal a remarkable similarity between these causally-related events, with a correlation coefficient of 91.2% and a time-lag of 130 days. Knowing the locations of the two spacecraft, we use the observed time-delay to calculate the GMIR's average speed through the heliosheath (inside the heliopause) as a function of temperature in the very local interstellar medium. This, combined with particle, field, and plasma observations enables us to infer previously unmeasured properties of the heliosheath, including a range of sound speeds and total effective pressures. For a nominal temperature of ~20,000 K just outside the heliopause, we find a sound speed of 314 (+/-) 32 km/s and total effective pressure of 267 (+/-) 55 fPa inside the heliopause. We compare these results with the Interstellar Boundary Explorer's data-driven models of heliosheath pressures derived from energetic neutral atom fluxes (the globally distributed flux) and present them as additional evidence that the heliosheath's dynamics are driven by suprathermal energetic processes.
Generalized plane-fronted gravitational waves in any dimension
Creators: name: Obukhov, Yuri N.
Publisher: name: arXiv
Year: 2003
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We study the gravitational waves in spacetimes of arbitrary dimension. They generalize the pp-waves and the Kundt waves, obtained earlier in four dimensions. Explicit solutions of the Einstein and Einstein-Maxwell equations are derived for an arbitrary cosmological constant.
description: Revtex, 18 pages, no figures
Strategic Planning Handbook for Cooperatives
Creators: name: Namken, Jerry C.
name: Rapp, Galen W.
name: Namken, Jerry C.
name: Rapp, Galen W.
Publisher: name: Unknown
Year: 1994
Subjects: subject: Agribusiness
subject: strategic
subject: planning
subject: cooperatives
subject: handbook

description: This handbook presents a method for facilitating the strategic planning process. Facilities, personnel, and equipment associated with the process are described. A description of “brainstorming” is given along with rules for conducting such sessions. The five phases of strategic planning are described in detail-agreeing to plan, gathering facts, evaluating facts, defining the plan, and evaluating results. Hints for success are provided throughout.
Role of axial twin boundaries on deformation mechanisms in Cu nanopillars
Creators: name: Rohith, P.
name: Sainath, G.
name: Goyal, Sunil
name: Nagesha, A.
name: Srinivasan, V. S.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: In recent years, twinned nanopillars have attracted tremendous attention for research due to their superior mechanical properties. However, most of the studies were focused on nanopillars with twin boundaries (TBs) perpendicular to loading direction. Nanopillars with TBs parallel to loading direction have received minimal interest. In this backdrop, the present study is aimed at understanding the role of axial TBs on strength and deformation behaviour of Cu nanopillars using atomistic simulations. Tensile and compression tests have been performed on $$ nanopillars with and without TBs. Twinned nanopillars with twin boundary spacing in the range 1.6-5 nm were considered. The results indicate that, under both tension and compression, yield strength increases with decreasing twin boundary spacing and is always higher than that of perfect nanopillars. Under compression, the deformation in $$ perfect as well as twinned nanopillars proceeds by the slip of extended dislocations. In twinned nanopillars, an extensive cross-slip by way of Friedel-Escaig and Fleischer mechanisms has been observed in compression. On the other hand, under tensile loading, the deformation in perfect nanopillars occurs by partial slip/twinning, while in twinned nanopillars, it proceeds by the slip of extended dislocations. This extended dislocation activity is facilitated by stair-rod formation and its dissociation on the twin boundary. Similar to compressive loading, the extended dislocations under tensile loading also exhibit cross-slip activity in twinned nanopillars. However, this cross-slip activity occurs only through Fleischer mechanism and no Friedel-Escaig mechanism of cross-slip has been observed under tensile loading.
description: 19 Pages, 13 Figures, Journal article
Additional file 5 of Aberrant expression of collagen type X in solid tumor stroma is associated with EMT, immunosuppressive and pro-metastatic pathways, bone marrow stromal cell signatures, and poor survival prognosis
Creators: name: Famili-Youth, Elliot H. H.
name: Famili-Youth, Aryana
name: Yang, Dongfang
name: Siddique, Ayesha
name: Wu, Elizabeth Y.
name: Liu, Wenguang
name: Resnick, Murray B.
name: Chen, Qian
name: Brodsky, Alexander S.
Publisher: name: figshare
Year: 2025
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Hematology
subject: Plant Biology

description: Supplementary Material 5. Figure S5: TCGA WGCNA module expression correlates with variable survival risk. (A–D) BH-adjusted significance values for multivariate Cox proportional hazards models conditioning overall survival (OS), disease-specific survival (DSS), disease-free interval (DFI), or progression-free interval (PFI) on age, gender, binarized tumor stage, and module eigengene (ME) expression for WGCNA modules from (A) breast cancer, (B) pancreatic cancer, (C) male pancreatic cancer, and (D) female pancreatic cancer cohorts. ColX modules for each dataset are indicated by bolded labels (see Figure 4B for focused ColX module results). Significance values: *, p.adj < 0.05; **, p.adj < 0.01; ***, p.adj < 0.001; ****, p.adj < 0.0001.
Automatic Program Repair as Semantic Suggestions: An Empirical Study
Creators: name: Campos, Diogo
name: Restivo, André
name: Ferreira, Hugo Sereno
name: Ramos, Afonso
Publisher: name: Zenodo
Year: 2021

description: Automated Program Repair (APR) is an area of research focused on the automatic generation of bug-fixing patches. Current APR approaches present some limitations, namely overfitted patches and low maintainability of the generated code. Several works are tackling this problem by attempting to come up with algorithms producing higher quality fixes. In this experience paper, we explore an alternative. We believe that by using existing low-cost APR techniques, fast enough to provide real-time feedback, and encouraging the developer to work together with the APR inside the IDE, will allow them to immediately discard proposed fixes deemed inappropriate or prone to reduce maintainability. Most developers are familiar with real-time syntactic code suggestions, usually provided as code completion mechanisms. What we propose are semantic code suggestions, such as code fixes, which are seldom automatic and rarely real-time. To test our hypothesis, we implemented a Visual Studio Code extension (named pAPRika), which leverages unit tests as specifications and generates code variations to repair bugs in JavaScript. We conducted a preliminary empirical study with 16 participants in a crossover design. Our results provide evidence that, although incorporating APR in the IDE improves the speed of repairing faulty programs, some developers are too eager to accept patches, disregarding maintenance concerns.
Additional file 15 of The interactome of CLUH reveals its association to SPAG5 and its co-translational proximity to mitochondrial proteins
Creators: name: Hémono, Mickaële
name: Haller, Alexandre
name: Chicher, Johana
name: Duchêne, Anne-Marie
name: Ngondo, Richard Patryk
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 15:. Figure S8. CLUH effect on RNA stability and translation.
Additional file 6 of Aberrant expression of collagen type X in solid tumor stroma is associated with EMT, immunosuppressive and pro-metastatic pathways, bone marrow stromal cell signatures, and poor survival prognosis
Creators: name: Famili-Youth, Elliot H. H.
name: Famili-Youth, Aryana
name: Yang, Dongfang
name: Siddique, Ayesha
name: Wu, Elizabeth Y.
name: Liu, Wenguang
name: Resnick, Murray B.
name: Chen, Qian
name: Brodsky, Alexander S.
Publisher: name: figshare
Year: 2025
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Hematology
subject: Plant Biology

description: Supplementary Material 6. Figure S6: Osteoarthritis cell type-specific markers are enriched for ColX module genes. (A–D) Bubble plots of OA cell type-specific marker gene enrichment in WGCNA modules from (A) breast cancer, (B) pancreatic cancer, (C) male pancreatic cancer, and (D) female pancreatic cancer cohorts. ColX modules for each dataset are indicated by bolded labels. (E) Overlap of genes within breast and pancreatic cancer ColX modules and OA cell type-specific gene sets. (F) Overlap of EMT pathway genes within breast and pancreatic cancer ColX modules and OA cell type-specific gene sets. Unlabeled sectors represent 0 gene overlap. NCSC is not shown as no NCSC-specific markers overlap with EMT pathway genes. NCSC, normal cartilage stromal cells; OA-MSC, osteoarthritis mesenchymal stromal cells; OAC, osteoarthritis chondrocytes; BMSC, bone marrow stromal cells.
Syntax-Tree Similarityfor Test-Case Derivabilityin Software Requirements
Creators: name: Masuda, Satoshi
name: Matsuodani, Tohru
name: Tsuda, Kazuhiko
Publisher: name: Zenodo
Year: 2021

description: Software testing has been important for software engineering to contribute to developing high-quality software. Decision table testing is a general technique to derive test cases with information on conditions and actions from software requirements. Deriving conditions and actions from requirements is key for efficient decision table testing. This paper proposes and evaluates a syntax-tree similarity method for test-case derivability in software requirements. We define the syntax-tree similarity technique used in our method as selecting test-case-derivable sentences from requirements at pre-processing. The syntax tree is defined as divided into sub-trees that consist of a root to each leaf. The syntax-tree similarity technique calculates the similarity between each sentence in the requirements and test-case-derivable sentence. The method involves natural language processing to select test-case-derivable sentences from the requirements on the basis of syntax-tree similarity then determines conditions and actions through dependency and case analyses. After selecting requirements by syntax-tree similarity, our method derives conditions and actions from the requirements by the deriving rules we define. Experiments revealed that the F-measure of the accuracy of the derived conditions and actions increased 16% from that reported in prior work. The results from case studies further indicate the effectiveness of our method.
Transient Quintessence from Group Manifold Reductions or how all roads lead to Rome
Creators: name: Bergshoeff, Eric
name: Collinucci, Andres
name: Gran, Ulf
name: Nielsen, Mikkel
name: Roest, Diederik
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Astrophysics (astro-ph)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We investigate the accelerating phases of cosmologies supported by a metric, scalars and a single exponential scalar potential. The different solutions can be represented by trajectories on a sphere and we find that quintessence happens within the "arctic circle" of the sphere. Furthermore, we obtain multi-exponential potentials from 3D group manifold reductions of gravity, implying that such potentials can be embedded in gauged supergravities with an M-theory origin. We relate the double exponential case to flux compactifications on maximally symmetric spaces and S-branes. In the triple exponential case our analysis suggests the existence of two exotic S(D-3)-branes in D dimensions.
description: 31 pages, 4 figures, 5 tables. v2: minor corrections, references added. v3: references and minor clarifications added
The Dehn filling space of a certain hyperbolic 3-orbifold
Creators: name: Kojima, Sadayoshi
name: Mizushima, Shigeru
Publisher: name: arXiv
Year: 2003
Subjects: subject: Geometric Topology (math.GT)
subject: FOS: Mathematics
subject: 57M50 (Primary) 52C15, 30F99 (Secondary)

description: We construct the first example of a ``one-cusped'' hyperbolic 3-orbifold for which we see the true shape of the space of hyperbolic Dehn fillings.
description: 10 pages, 11 embedded figures
Economics of Sugarbeet Marketing
Creators: name: Jackson, Donald
name: Jackson, Donald
Publisher: name: Unknown
Year: 1962
Subjects: subject: Crop Production/Industries
subject: Marketing
subject: FOS: Economics and business
subject: Risk and Uncertainty

description: Preface: This publication presents the results of the second study of sugarbeet marketing made by the Department of Agriculture following the recommendation of the Sugar Research and Marketing Advisory Committee in February 1955. The first study, "Marketing Sugar Beets," AMS-137, was published in November 1956. Information for the study was obtained from a variety of sources, including interviews with sugarbeet processors and growers, and with representatives of growers' associations. Sample grower-processor contracts and various secondary sources were studied. This report describes and evaluates several ways in which the economic relationship that now exists between sugarbeet growers and processors might be changed in an effort to improve marketing efficiency. The alternatives were developed from discussions with industry representatives, both growers and processors, and from information in the Department concerning similar arrangements used in processing other agricultural products. Each of the alternatives was found to have some disadvantages.
Galactic Conformity in both Star-formation and Morphological Properties
Creators: name: Otter, Justin A.
name: Masters, Karen L.
name: Simmons, Brooke
name: Lintott, Chris J.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We investigate one-halo galactic conformity (the tendency for satellite galaxies to mirror the properties of their central) in both star-formation and morphology using a sample of 8230 galaxies in 1266 groups with photometry and spectroscopy from the Sloan Digital Sky Survey, morphologies from Galaxy Zoo and group memberships as determined by Yang et al. This is the first paper to investigate galactic conformity in both star-formation and visual morphology properties separately. We find that the signal of galactic conformity is present at low significance in both star-formation and visual morphological properties, however it is stronger in star-formation properties. Over the entire halo mass range we find that groups with star-forming (spiral) centrals have, on average, a fraction 0.18+-0.08 (0.08+-0.06) more star-forming (spiral) satellites than groups with passive (early-type) centrals at a similar halo mass. We also consider conformity in groups with four types of central: passive early-types, star-forming spirals, passive spirals and star-forming early-types (which are very rarely centrals), finding that the signal of morphological conformity is strongest around passive centrals regardless of morphology; although blue spiral centrals are also more likely than average to have blue spiral satellites. We interpret these observations of the relative size of the conformity signal as supporting a scenario where star-formation properties are relatively easily changed, while morphology changes less often/more slowly for galaxies in the group environment.
description: Accepted in MNRAS
Additional file 16 of The interactome of CLUH reveals its association to SPAG5 and its co-translational proximity to mitochondrial proteins
Creators: name: Hémono, Mickaële
name: Haller, Alexandre
name: Chicher, Johana
name: Duchêne, Anne-Marie
name: Ngondo, Richard Patryk
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 16:. Figure S9. Polysome profiling from crude mitochondrial extract.
A Replication Package For The Paper "Anti-bloater Class Restructuring: An Exploratory Study"
Creators: name: Jo\~Ao Paulo L. Machado
name: Sobrinho, V. P.
name: Maia, Marcelo A.
Publisher: name: Zenodo
Year: 2021
Subjects: bloaters
structure
refactoring
temporal analysis
predictive models

description: This is the replication package for the paper: Anti-bloater class restructuring: an exploratory study.
Brownian Motion, Chern-Simons Theory, and 2d Yang-Mills
Creators: name: de Haro, Sebastian
name: Tierz, Miguel
Publisher: name: arXiv
Year: 2004
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: We point out a precise connection between Brownian motion, Chern-Simons theory on S^3, and 2d Yang-Mills theory on the cylinder. The probability of reunion for N vicious walkers on a line gives the partition function of Chern-Simons theory on S^3 with gauge group U(N). The probability of starting with an equal-spacing condition and ending up with a generic configuration of movers gives the expectation value of the unknot. The probability with arbitrary initial and final states corresponds to the expectation value of the Hopf link. We find that the matrix model calculation of the partition function is nothing but the additivity law of probabilities. We establish a correspondence between quantities in Brownian motion and the modular S- and T-matrices of the WZW model at finite k and N. Brownian motion probabilitites in the affine chamber of a Lie group are shown to be related to the partition function of 2d Yang-Mills on the cylinder. Finally, the random-turns model of discrete random walks is related to Wilson's plaquette model of 2d QCD, and the latter provides an exact two-dimensional analog of the melting crystal corner. Brownian motion provides a useful unifying framework for understanding various low-dimensional gauge theories.
description: 12 pages, v2: typos corrected, reference added
The BTeV Experiment
Creators: name: Vaandering, E. W.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: BTeV is an approved forward collider experiment at the Fermilab Tevatron dedicated to precision studies of CP violation, mixing, and rare decays of beauty and charmed hadrons. The BTeV detector has been designed to achieve these goals. Pixel detectors cover the interaction region and vertex computation is included in the lowest level trigger.
description: Presented at EPS 2003 HEP conference in Aachen, Germany
Additional file 7 of Aberrant expression of collagen type X in solid tumor stroma is associated with EMT, immunosuppressive and pro-metastatic pathways, bone marrow stromal cell signatures, and poor survival prognosis
Creators: name: Famili-Youth, Elliot H. H.
name: Famili-Youth, Aryana
name: Yang, Dongfang
name: Siddique, Ayesha
name: Wu, Elizabeth Y.
name: Liu, Wenguang
name: Resnick, Murray B.
name: Chen, Qian
name: Brodsky, Alexander S.
Publisher: name: figshare
Year: 2025
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Hematology
subject: Plant Biology

description: Supplementary Material 7. Figure S7: Collagen gene expression varies across bone and cartilage cell types and TCGA cohorts. (A) Normalized expression of all collagen genes expressed at nontrivial levels in bone marrow and cartilage cell types. Note that COL6A4P1, COL6A5, COL20A1, and COL23A1 were filtered out as “low-expression” genes and are omitted here. NCSC, normal cartilage stromal cells; OA-MSC, osteoarthritis mesenchymal stromal cells; OAC, osteoarthritis chondrocytes; BMSC, bone marrow stromal cells. (B) Normalized expression of all collagen genes expressed at nontrivial levels in TCGA cohorts. Note that COL6A4P1, COL6A5, COL20A1, and COL26A1 were filtered out as “low-expression” genes and are omitted here; additionally, COL2A1 was only nontrivially expressed in BRCA.
Additional file 1 of Is the HERV-K HML-2 Xq21.33, an endogenous retrovirus mutated by gene conversion of chromosome X in a subset of African populations, associated with human breast cancer?
Creators: name: Kaplan, Mark
name: Contreras-Galindo, Rafael
name: Jiagge, Evelyn
name: Merajver, Sofia
name: Newman, Lisa
name: Bigman, Galya
name: Dosik, Michael
name: Palapattu, Ganesh
name: Siddiqui, Javed
name: Chinnaiyan, Arul
name: Adebamowo, Sally
name: Adebamowo, Clement
Publisher: name: figshare
Year: 2020
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Supplementary Fig. 1. Alignment of HK2 X21q33 sequences from populations of African ancestry.
Near-infrared observations of active asteroid (3200) Phaethon reveal no evidence for hydration
Creators: name: Takir, Driss
name: Kareta, Theodore
name: Emery, Joshua P.
name: Hanus, Josef
name: Reddy, Vishnu
name: Howell, Ellen S.
name: Rivkin, Andrew S.
name: Arai, Tomoko
Publisher: name: arXiv
Year: 2020
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: Asteroid (3200) Phaethon is an active near-Earth asteroid and the parent body of the Geminid Meteor Shower. Because of its small perihelion distance, Phaethon's surface reaches temperatures sufficient to destabilize hydrated materials. We conducted rotationally resolved spectroscopic observations of this asteroid, mostly covering the northern hemisphere and the equatorial region, beyond 2.5-micron to search for evidence of hydration on its surface. Here we show that the observed part of Phaethon does not exhibit the 3-micron hydrated mineral absorption (within 2-sigma). These observations suggest that Phaethon's modern activity is not due to volatile sublimation or devolatilization of phyllosilicates on its surface. It is possible that the observed part of Phaethon was originally hydrated and has since lost volatiles from its surface via dehydration, supporting its connection to the Pallas family, or it was formed from anhydrous material.
Additional file 8 of Aberrant expression of collagen type X in solid tumor stroma is associated with EMT, immunosuppressive and pro-metastatic pathways, bone marrow stromal cell signatures, and poor survival prognosis
Creators: name: Famili-Youth, Elliot H. H.
name: Famili-Youth, Aryana
name: Yang, Dongfang
name: Siddique, Ayesha
name: Wu, Elizabeth Y.
name: Liu, Wenguang
name: Resnick, Murray B.
name: Chen, Qian
name: Brodsky, Alexander S.
Publisher: name: figshare
Year: 2025
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Hematology
subject: Plant Biology

description: Supplementary Material 8. Figure S8: A public single-cell and spatially resolved atlas of human breast cancers corroborates COL10A1 stromal predominance. (A–C) Spatial profiling of human breast cancer and normal tissue published by Wu et al. [97], demonstrating (A) H&E staining, (B) pathological classification, and (C) COL10A1 expression. Scale bars = 1 µm. (D and E) Single-cell COL10A1 expression across (D) all major cell types and (E) cancer-associated fibroblast (CAF) subsets in the breast cancer atlas. Data were obtained from (A–C) the UCSC Xena browser (accession Wu_Swarbrick_breast_cancer_CID44971) and (D and E) the Broad Institute Single-Cell Portal (accession SCP1039). PVL, perivascular-like cell; MSC iCAF, mesenchymal stem cell, inflammatory-like fibroblast.
Segregation in diffusion-limited multispecies pair annihilation
Creators: name: Hilhorst, H. J.
name: Deloubriere, O.
name: Washenberger, M. J.
name: Tauber, U. C.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: The kinetics of the q species pair annihilation reaction (A_i + A_j -> 0 for 1 <= i < j <= q) in d dimensions is studied by means of analytical considerations and Monte Carlo simulations. In the long-time regime the total particle density decays as rho(t) ~ t^{- alpha}. For d = 1 the system segregates into single species domains, yielding a different value of alpha for each q; for a simplified version of the model in one dimension we derive alpha(q) = (q-1) / (2q). Within mean-field theory, applicable in d >= 2, segregation occurs only for q < 1 + (4/d). The only physical realisation of this scenario is the two-species process (q = 2) in d = 2 and d = 3, governed by an extra local conservation law. For d >= 2 and q >= 1 + (4/d) the system remains disordered and its density is shown to decay universally with the mean-field power law (alpha = 1) that also characterises the single-species annihilation process A + A -> 0.
description: 35 pages (IOP style files included), 10 figures included (as eps files)
Supplementary document for Integrated chirped photonic-crystal cavities in gallium phosphide for broadband soliton generation - 7177486.pdf
Creators: name: Nardi, Alberto
name: Davydova, Alisa
name: Kuznetsov, Nikolai
name: Anderson, Miles
name: Möhl, Charles
name: Riemensberger, Johann
name: Kippenberg, Tobias
name: Seidler, Paul
Publisher: name: Optica Publishing Group
Year: 2024
Subjects: Uncategorized

description: Supplementary Information
Additional file 1 of Assessing health system challenges and opportunities for better noncommunicable disease outcomes: the case of Mauritius
Creators: name: Musango, Laurent
name: Timol, Maryam
name: Premduth Burhoo
name: Shaikh, Faisal
name: Donnen, Philippe
name: Joses Kirigia
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Computational Biology

description: Additional File 1. Criteria used for scoring coverage of NCD population-based interventions.
Additional file 1 of The interactome of CLUH reveals its association to SPAG5 and its co-translational proximity to mitochondrial proteins
Creators: name: Hémono, Mickaële
name: Haller, Alexandre
name: Chicher, Johana
name: Duchêne, Anne-Marie
name: Ngondo, Richard Patryk
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1:. Figure S1. Generation of 3xHA-CLUH expressing cells and proteomic analysis
title: Abstracting multidimensional concepts for multilevel decision making in multorobot systems
Creators: name: Law, James A
Publisher: name: The Open University
Year: 2008

description: Multirobot control architectures often require robotic tasks to be well defined before allocation. In complex missions, it is often difficult to decompose an objective into a set of well defined tasks; human operators generate a simplified representation based on experience and estimation. The result is a set of robot roles, which are not best suited to accomplishing those objectives. This thesis presents an alternative approach to generating multirobot control algorithms using task abstraction. By carefully analysing data recorded from similar systems a multidimensional and multilevel representation of the mission can be abstracted, which can be subsequently converted into a robotic controller. This work, which focuses on the control of a team of robots to play the complex game of football, is divided into three sections: In the first section we investigate the use of spatial structures in team games. Experimental results show that cooperative teams beat groups of individuals when competing for space and that controlling space is important in the game of robot football. In the second section, we generate a multilevel representation of robot football based on spatial structures measured in recorded matches. By differentiating between spatial configurations appearing in desirable and undesirable situations, we can abstract a strategy composed of the more desirable structures. In the third section, five partial strategies are generated, based on the abstracted structures, and a suitable controller is devised. A set of experiments shows the success of the method in reproducing those key structures in a multirobot system. Finally, we compile our methods into a formal architecture for task abstraction and control. The thesis concludes that generating multirobot control algorithms using task abstraction is appropriate for problems which are complex, weakly-defined, multilevel, dynamic, competitive, unpredictable, and which display emergent properties.
Management, Capital Structure and Farm Firm Growth Revisited
Creators: name: Patrick, George F.
name: Patrick, George F.
Publisher: name: Unknown
Year: 1976
Subjects: Agribusiness

description: Research on farm firm growth has received considerable emphasis in agricultural economics since the 1960's. Developments in theoretical conceptualization, quantitative methodology and empirical application have interacted to improve and extend our knowledge of the growth process. With the emphasis the area has received, one would expect that the problems of farm firm growth have been resolved, but researchers, extension specialists, and farmers remain perplexed by the practicalities of growth.
Additional file 20 of The interactome of CLUH reveals its association to SPAG5 and its co-translational proximity to mitochondrial proteins
Creators: name: Hémono, Mickaële
name: Haller, Alexandre
name: Chicher, Johana
name: Duchêne, Anne-Marie
name: Ngondo, Richard Patryk
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 20:. supplementary file 1. Uncropped images of western blots.
Black hole formation in perfect fluid collapse
Creators: name: Goswami, Rituparno
name: Joshi, Pankaj S
Publisher: name: arXiv
Year: 2003
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We construct here a special class of perfect fluid collapse models which generalizes the homogeneous dust collapse solution in order to include non-zero pressures and inhomogeneities into evolution. It is shown that a black hole is necessarily generated as end product of continued gravitational collapse, rather than a naked singularity. We examine the nature of the central singularity forming as a result of endless collapse and it is shown that no non-spacelike trajectories can escape from the central singularity. Our results provide some insights into how the dynamical collapse works, and into the possible formulations of the cosmic censorship hypothesis, which is as yet a major unsolved problem in black hole physics.
description: Revtex4, To appear in Physical Review D
Complexity of geometric three-manifolds
Creators: name: Martelli, Bruno
name: Petronio, Carlo
Publisher: name: arXiv
Year: 2003
Subjects: subject: Geometric Topology (math.GT)
subject: FOS: Mathematics
subject: 57M27 (primary), 57M50 (secondary)

description: We compute for all orientable irreducible geometric 3-manifolds certain complexity functions that approximate from above Matveev's natural complexity, known to be equal to the minimal number of tetrahedra in a triangulation. We can show that the upper bounds on Matveev's complexity implied by our computations are sharp for thousands of manifolds, and we conjecture they are for infinitely many, including all Seifert manifolds. Our computations and estimates apply to all the Dehn fillings of M6_1^3 (the complement of the three-component chain-link, conjectured to be the smallest triply cusped hyperbolic manifold), whence to infinitely many among the smallest closed hyperbolic manifolds. Our computations are based on the machinery of the decomposition into `bricks' of irreducible manifolds, developed in a previous paper. As an application of our results we completely describe the geometry of all 3-manifolds of complexity up to 9.
description: 62 pages, 9 figures, this is the second part of (a revised version of) the former math.GT/0204228