cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Similarity Equivariant Graph Neural Networks for Homogenization of Metamaterials
Creators: name: Hendriks, Fleur
name: Menkovski, Vlado
name: Doškář, Martin
name: Geers, Marc G. D.
name: Rokoš, Ondřej
Publisher: name: arXiv
Year: 2024
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Artificial Intelligence (cs.AI)
subject: Machine Learning (cs.LG)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: Soft, porous mechanical metamaterials exhibit pattern transformations that may have important applications in soft robotics, sound reduction and biomedicine. To design these innovative materials, it is important to be able to simulate them accurately and quickly, in order to tune their mechanical properties. Since conventional simulations using the finite element method entail a high computational cost, in this article we aim to develop a machine learning-based approach that scales favorably to serve as a surrogate model. To ensure that the model is also able to handle various microstructures, including those not encountered during training, we include the microstructure as part of the network input. Therefore, we introduce a graph neural network that predicts global quantities (energy, stress stiffness) as well as the pattern transformations that occur (the kinematics). To make our model as accurate and data-efficient as possible, various symmetries are incorporated into the model. The starting point is an E(n)-equivariant graph neural network (which respects translation, rotation and reflection) that has periodic boundary conditions (i.e., it is in-/equivariant with respect to the choice of RVE), is scale in-/equivariant, can simulate large deformations, and can predict scalars, vectors as well as second and fourth order tensors (specifically energy, stress and stiffness). The incorporation of scale equivariance makes the model equivariant with respect to the similarities group, of which the Euclidean group E(n) is a subgroup. We show that this network is more accurate and data-efficient than graph neural networks with fewer symmetries. To create an efficient graph representation of the finite element discretization, we use only the internal geometrical hole boundaries from the finite element mesh to achieve a better speed-up and scaling with the mesh size.
description: 60 pages, 22 figures. Published in CMAME (Computer Methods in Applied Mechanics and Engineering)
Supplementary document for Deep Learning-Enabled Rapid Full Electromagnetic Near-Field Prediction and Rapid Inverse Design of Metasurfaces: A Proof-of-Concept Implementation of All-Dielectric Inter-Coupled Nanopillar Fabrics - 6613440.pdf
Creators: name: Kanmaz, Tevfik
name: Ozturk, Efe
name: Demir, Hilmi Volkan
name: Gunduz-Demir, Cigdem
Publisher: name: Optica Publishing Group
Year: 2025
Subjects: Uncategorized

description: Highlighted and Clean Copy of Supplemental Document
POLLINATION IS THE UNION: HOW INATURALIST INSECTS AND PLANTS OBSERVATIONS CAN IMPROVE THE LIFE4POLLINATORS DATABASE.
Creators: name: Costantino, Roberto
name: Bitonto, Fortunato Fulvio
name: Avesani, Daniele
name: Barberis, Marta
name: Birtele, Daniele
name: Cangelmi, Giacomo
name: Dal Cin, Matteo
name: Flaminio, Simone
name: Ranalli, Rosa
name: Magagnoli, Serena
name: Laureti, Mariacristina
name: Capacci, Martina
name: Rudari, Zeno
name: Minici, Alessio
name: Sgolastra, Fabio
name: Dante, Giovanna
name: Bortolotti, Laura
name: Navarro, Luis
name: Traveset, Anna
name: Petanidou, Theodora
name: Galloni, Marta
Publisher: name: Zenodo
Year: 2024

description: Over the last decades, a sharp decline in wild pollinator abundance and diversity has emerged in the European Union and around the World. Responding to this challenge, the role of NATURA 2000 protected areas network and citizen science platforms are of primary importance to safeguard wild pollinators, as highlighted in the revised EU Pollinators Initiative. Through the various observations uploaded as photos by citizens, the LIFE4POLLINATORS web-platform, activated 3 years ago, offers a valid tool to gather information on pollinators and their preferred plants. Users can upload photo-records of pollinator-plant interactions, which are subsequently identified by expert taxonomists. At present, over 1800 photos have been uploaded, half of which were taken inside NATURA 2000 sites. Almost 800 photos were used to identify at species level a total of 226 plants and 208 pollinators. Of these, 7 and 20 respectively have a conservation status in the IUCN European red list, and more are present in the countries’ list. The observations of several Data Deficient species suggest that citizen science could be an effective tool for wide data gathering.  

Other important citizen science platforms can be used to update plant-pollinator information. Among these, iNaturalist presents a remarkable number of uploaded images: since the start of LIFE4POLLINATORS in the four main project partner states (Greece, Italy, Slovenia and Spain) more than two and a half million observations of insects and flowering plants have been uploaded, but lacks information on the relationships that may have been captured with the shots.  The team is currently extrapolating images from the last few months depicting insect-flower interaction. These will then be identified by the team of taxonomists and will supplement the project's database. This could fill data gaps, which is fundamental for the protection of mutually dependent pollinators and plants.
Supplement_2._Vancomycin_AUC_formulas - Vancomycin Area Under the Curve Dosing and Monitoring at an Academic Medical Center: Transition Strategies and Lessons Learned
Creators: name: Gregory, Eric R.
name: Burgess, Donna R.
name: Cotner, Sarah E.
name: VanHoose, Jeremy D.
name: Flannery, Alexander H.
name: Gardner, Brian
name: Autry, Elizabeth B.
name: Forster, Derek W.
name: Burgess, David S.
name: Wallace, Katie L.
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 111199 Nutrition and Dietetics not elsewhere classified
subject: FOS: Health sciences
subject: 111702 Aged Health Care
subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: FOS: Clinical medicine

description: Supplement_2._Vancomycin_AUC_formulas for Vancomycin Area Under the Curve Dosing and Monitoring at an Academic Medical Center: Transition Strategies and Lessons Learned by Eric R. Gregory, Donna R. Burgess, Sarah E. Cotner, Jeremy D. VanHoose, Alexander H. Flannery, Brian Gardner, Elizabeth B. Autry, Derek W. Forster, David S. Burgess, and Katie L. Wallace in Journal of Pharmacy Practice
Additional file 1 of Exploring medical and veterinary student perceptions and communication preferences related to antimicrobial resistance in Ontario, Canada using qualitative methods
Creators: name: Primeau, Courtney A.
name: McWhirter, Jennifer E.
name: Carson, Carolee
name: McEwen, Scott A.
name: Parmley, E. Jane
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Environmental Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Supplementary Material 1
DS1_JVDI_10.1177_1040638719834329 – Supplemental material for Quantitation of neonicotinoid insecticides, plus qualitative screening for other xenobiotics, in small-mass avian tissue samples using UHPLC high-resolution mass spectrometry
Creators: name: Filigenzi, Michael S.
name: Graves, Emily E.
name: Tell, Lisa A.
name: Jelks, Karen A.
name: Poppenga, Robert H.
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: FOS: Clinical medicine
subject: 70706 Veterinary Medicine
subject: FOS: Veterinary sciences

description: Supplemental material, DS1_JVDI_10.1177_1040638719834329 for Quantitation of neonicotinoid insecticides, plus qualitative screening for other xenobiotics, in small-mass avian tissue samples using UHPLC high-resolution mass spectrometry by Michael S. Filigenzi, Emily E. Graves, Lisa A. Tell, Karen A. Jelks and Robert H. Poppenga in Journal of Veterinary Diagnostic Investigation
Additional file 3 of Exploring medical and veterinary student perceptions and communication preferences related to antimicrobial resistance in Ontario, Canada using qualitative methods
Creators: name: Primeau, Courtney A.
name: McWhirter, Jennifer E.
name: Carson, Carolee
name: McEwen, Scott A.
name: Parmley, E. Jane
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Environmental Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Supplementary Material 3
MeierSupplementalMaterial_rev – Supplemental material for Is There a Positive Association Between Working Memory Capacity and Mind Wandering in a Low-Demand Breathing Task? A Preregistered Replication of a Study by Levinson, Smallwood, and Davidson (2012)
Creators: name: Meier, Matt E.
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: Neuroscience

description: Supplemental material, MeierSupplementalMaterial_rev for Is There a Positive Association Between Working Memory Capacity and Mind Wandering in a Low-Demand Breathing Task? A Preregistered Replication of a Study by Levinson, Smallwood, and Davidson (2012) by Matt E. Meier in Psychological Science
EFT analysis of New Physics at COHERENT
Creators: name: Bresó-Pla, Víctor
name: Falkowski, Adam
name: González-Alonso, Martín
name: Monsálvez-Pozo, Kevin
Publisher: name: arXiv
Year: 2023
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: Using an effective field theory approach, we study coherent neutrino scattering on nuclei, in the setup pertinent to the COHERENT experiment. We include non-standard effects both in neutrino production and detection, with an arbitrary flavor structure, with all leading Wilson coefficients simultaneously present, and without assuming factorization in flux times cross section. A concise description of the COHERENT event rate is obtained by introducing three generalized weak charges, which can be associated (in a certain sense) to the production and scattering of $ν_e$, $ν_μ$ and $\barν_μ$ on the nuclear target. Our results are presented in a convenient form that can be trivially applied to specific New Physics scenarios. In particular, we find that existing COHERENT measurements provide percent level constraints on two combinations of Wilson coefficients. These constraints have a visible impact on the global SMEFT fit, even in the constrained flavor-blind setup. The improvement, which affects certain 4-fermion LLQQ operators, is significantly more important in a flavor-general SMEFT. Our work shows that COHERENT data should be included in electroweak precision studies from now on.
description: 52 pages, 7 figures, 3 tables, typos corrected
Appendix_Methods_daVinci_Controversy-MCRR1 – Supplemental material for When the Evidence Basis Breeds Controversies: Exploring the Value Profile of Robotic Surgery Beyond the Early Introduction Phase
Creators: name: Abrishami, Payam
name: Boer, Albert
name: Klasien Horstman
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 111799 Public Health and Health Services not elsewhere classified
subject: FOS: Health sciences
subject: 160807 Sociological Methodology and Research Methods
subject: FOS: Sociology

description: Supplemental material, Appendix_Methods_daVinci_Controversy-MCRR1 for When the Evidence Basis Breeds Controversies: Exploring the Value Profile of Robotic Surgery Beyond the Early Introduction Phase by Payam Abrishami, Albert Boer and Klasien Horstman in Medical Care Research and Review
Representing Noisy Image Without Denoising
Creators: name: Qi, Shuren
name: Zhang, Yushu
name: Wang, Chao
name: Xiang, Tao
name: Cao, Xiaochun
name: Xiang, Yong
Publisher: name: arXiv
Year: 2023
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Image and Video Processing (eess.IV)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: A long-standing topic in artificial intelligence is the effective recognition of patterns from noisy images. In this regard, the recent data-driven paradigm considers 1) improving the representation robustness by adding noisy samples in training phase (i.e., data augmentation) or 2) pre-processing the noisy image by learning to solve the inverse problem (i.e., image denoising). However, such methods generally exhibit inefficient process and unstable result, limiting their practical applications. In this paper, we explore a non-learning paradigm that aims to derive robust representation directly from noisy images, without the denoising as pre-processing. Here, the noise-robust representation is designed as Fractional-order Moments in Radon space (FMR), with also beneficial properties of orthogonality and rotation invariance. Unlike earlier integer-order methods, our work is a more generic design taking such classical methods as special cases, and the introduced fractional-order parameter offers time-frequency analysis capability that is not available in classical methods. Formally, both implicit and explicit paths for constructing the FMR are discussed in detail. Extensive simulation experiments and an image security application are provided to demonstrate the uniqueness and usefulness of our FMR, especially for noise robustness, rotation invariance, and time-frequency discriminability.
description: Accepted by IEEE Transactions on Pattern Analysis and Machine Intelligence, 2024
CCPP-18-0019.R1_Appendix_B3-converted – Supplemental material for The geography of a controversial diagnosis: A bibliographic analysis of published academic perspectives on ‘paediatric bipolar disorder’
Creators: name: Parry, Peter
name: Allison, Stephen
name: Bastiampillai, Tarun
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 111099 Nursing not elsewhere classified
subject: FOS: Health sciences
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: FOS: Clinical medicine

description: Supplemental material, CCPP-18-0019.R1_Appendix_B3-converted for The geography of a controversial diagnosis: A bibliographic analysis of published academic perspectives on ‘paediatric bipolar disorder’ by Peter Parry, Stephen Allison and Tarun Bastiampillai in Clinical Child Psychology and Psychiatry
Evaluation of a Multi-Molecule Molecular Communication Testbed Based on Spectral Sensing
Creators: name: Wietfeld, Alexander
name: Schmidt, Sebastian
name: Kellerer, Wolfgang
Publisher: name: arXiv
Year: 2024
Subjects: subject: Emerging Technologies (cs.ET)
subject: FOS: Computer and information sciences

description: This work presents a novel flow-based molecular communication (MC) testbed using spectral sensing and ink intensity estimation to enable real-time multi-molecule (MUMO) transmission. MUMO communication opens up crucial opportunities for increased throughput as well as implementing more complex coding, modulation, and resource allocation strategies for MC testbeds. An estimator using non-invasive spectral sensing at the receiver is proposed based on a simple absorption model. We conduct in-depth channel impulse response (CIR) measurements and a preliminary communication performance evaluation. Additionally, a simple analytical model is used to check the consistency of the CIRs. The results indicate that by utilizing MUMO transmission, on-off-keying, and a simple difference detector, the testbed can achieve up to 3 bits per second for near-error-free communication, which is on par with comparable testbeds that utilize more sophisticated coding or detection methods. Our platform lays the ground for implementing MUMO communication and evaluating various physical layer and networking techniques based on multiple molecule types in future MC testbeds in real time.
description: 7 pages, 5 figures
JOP_Supplementary_Material – Supplemental material for Combining CDP-choline and galantamine: Effects of a selective α7 nicotinic acetylcholine receptor agonist strategy on P50 sensory gating of speech sounds in healthy volunteers
Creators: name: Choueiry, Joelle
name: Blais, Crystal M
name: Dhrasti Shah
name: Smith, Dylan
name: Fisher, Derek
name: Illivitsky, Vadim
name: Knott, Verner
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)

description: Supplemental material, JOP_Supplementary_Material for Combining CDP-choline and galantamine: Effects of a selective α7 nicotinic acetylcholine receptor agonist strategy on P50 sensory gating of speech sounds in healthy volunteers by Joelle Choueiry, Crystal M Blais, Dhrasti Shah, Dylan Smith, Derek Fisher, Vadim Illivitsky and Verner Knott in Journal of Psychopharmacology
Clinical_rehab_frailty_prevalence_supplementary_material – Supplemental material for The prevalence of frailty among acute stroke patients, and evaluation of method of assessment
Creators: name: Taylor-Rowan, Martin
name: Cuthbertson, Gillian
name: Keir, Ruth
name: Shaw, Robert
name: Bogna Drozdowska
name: Elliott, Emma
name: Stott, David
name: Quinn, Terence J
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: 110314 Orthopaedics
subject: 110604 Sports Medicine
subject: FOS: Health sciences

description: Supplemental material, Clinical_rehab_frailty_prevalence_supplementary_material for The prevalence of frailty among acute stroke patients, and evaluation of method of assessment by Martin Taylor-Rowan, Gillian Cuthbertson, Ruth Keir, Robert Shaw, Bogna Drozdowska, Emma Elliott, David Stott and Terence J Quinn in Clinical Rehabilitation
Supplementary document for Physics-driven universal twin-image removal network for digital in-line holographic microscopy - 6613614.pdf
Creators: name: Rogalski, Mikolaj
name: Arcab, Piotr
name: Stanaszek, Luiza
name: Mico, Vicente
name: Zuo, Chao
name: Trusiak, Maciej
Publisher: name: Optica Publishing Group
Year: 2025
Subjects: Photonics, Optoelectronics and Optical Communications

description: Analysis of UTIRnet performance depending on the microscope system parameters and description of supplementary visualizations.
A fully discrete evolving surface finite element method for the Cahn-Hilliard equation with a regular potential
Creators: name: Elliott, Charles M.
name: Sales, Thomas
Publisher: name: arXiv
Year: 2024
Subjects: subject: Numerical Analysis (math.NA)
subject: FOS: Mathematics
subject: 65M60 (Primary), 65M15, 35K58 (Secondary)

description: We study two fully discrete evolving surface finite element schemes for the Cahn-Hilliard equation on an evolving surface, given a smooth potential with polynomial growth. In particular we establish optimal order error bounds for a (fully implicit) backward Euler time-discretisation, and an implicit-explicit time-discretisation, with isoparametric surface finite elements discretising space.
description: 42 pages, 5 figures (added new section on sharp interface numerics)
Emergent quantum Majorana metal from a chiral spin liquid
Creators: name: Zhu, Penghao
name: Feng, Shi
name: Wang, Kang
name: Xiang, Tao
name: Trivedi, Nandini
Publisher: name: arXiv
Year: 2024
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We propose a mechanism to explain the emergence of an intermediate gapless spin liquid phase in the antiferromagnetic Kitaev model in an externally applied magnetic field, sandwiched between the well-known gapped chiral spin liquid and the gapped partially polarized phase. We propose that, in moderate fields, $π$-fluxes nucleate in the ground state and trap Majorana zero modes. As these fluxes proliferate with increasing field, the Majorana zero modes overlap creating an emergent $\mathbb{Z}_2$ quantum Majorana metallic state with a `Fermi surface' at zero energy. We further show that the Majorana spectral function captures the dynamical spin and dimer correlations obtained by the infinite Projected Entangled Pair States method, thereby validating our variational approach.
description: 10+12 pages, 4+7 figures
SassenbergRevOpenPracticesDisclosure – Supplemental material for Research in Social Psychology Changed Between 2011 and 2016: Larger Sample Sizes, More Self-Report Measures, and More Online Studies
Creators: name: Sassenberg, Kai
name: Ditrich, Lara
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: FOS: Clinical medicine

description: Supplemental material, SassenbergRevOpenPracticesDisclosure for Research in Social Psychology Changed Between 2011 and 2016: Larger Sample Sizes, More Self-Report Measures, and More Online Studies by Kai Sassenberg and Lara Ditrich in Advances in Methods and Practices in Psychological Science
qSWIFT: High-order randomized compiler for Hamiltonian simulation
Creators: name: Nakaji, Kouhei
name: Bagherimehrab, Mohsen
name: Aspuru-Guzik, Alan
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Hamiltonian simulation is known to be one of the fundamental building blocks of a variety of quantum algorithms such as its most immediate application, that of simulating many-body systems to extract their physical properties. In this work, we present qSWIFT, a high-order randomized algorithm for Hamiltonian simulation. In qSWIFT, the required number of gates for a given precision is independent of the number of terms in Hamiltonian, while the systematic error is exponentially reduced with regards to the order parameter. In this respect, our qSWIFT is a higher-order counterpart of the previously proposed quantum stochastic drift protocol (qDRIFT), in which the number of gates scales linearly with the inverse of the precision required. We construct the qSWIFT channel and establish a rigorous bound for the systematic error quantified by the diamond norm. qSWIFT provides an algorithm to estimate given physical quantities using a system with one ancilla qubit, which is as simple as other product-formula-based approaches such as regular Trotter-Suzuki decompositions and qDRIFT. Our numerical experiment reveals that the required number of gates in qSWIFT is significantly reduced compared to qDRIFT. Particularly, the advantage is significant for problems where high precision is required; for example, to achieve a systematic relative propagation error of $10^{-6}$, the required number of gates in third-order qSWIFT is 1000 times smaller than that of qDRIFT.
description: 23 pages, 7 figures
A Complete Invariant for Shift Equivalence for Boolean Matrices and Finite Relations
Creators: name: Akin, Ethan
name: Mrozek, Marian
name: Przybylski, Mateusz
name: Wiseman, Jim
Publisher: name: arXiv
Year: 2024
Subjects: subject: Dynamical Systems (math.DS)
subject: FOS: Mathematics
subject: 37B30, 05C20, 15A21, 15B36, 18B10

description: We give a complete invariant for shift equivalence for Boolean matrices (equivalently finite relations), in terms of the period, the induced partial order on recurrent components, and the cohomology class of the relation on those components.
Content and Salient Semantics Collaboration for Cloth-Changing Person Re-Identification
Creators: name: Wang, Qizao
name: Qian, Xuelin
name: Li, Bin
name: Chen, Lifeng
name: Fu, Yanwei
name: Xue, Xiangyang
Publisher: name: arXiv
Year: 2024
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: Cloth-changing person re-identification aims at recognizing the same person with clothing changes across non-overlapping cameras. Advanced methods either resort to identity-related auxiliary modalities (e.g., sketches, silhouettes, and keypoints) or clothing labels to mitigate the impact of clothes. However, relying on unpractical and inflexible auxiliary modalities or annotations limits their real-world applicability. In this paper, we promote cloth-changing person re-identification by leveraging abundant semantics present within pedestrian images, without the need for any auxiliaries. Specifically, we first propose a unified Semantics Mining and Refinement (SMR) module to extract robust identity-related content and salient semantics, mitigating interference from clothing appearances effectively. We further propose the Content and Salient Semantics Collaboration (CSSC) framework to collaborate and leverage various semantics, facilitating cross-parallel semantic interaction and refinement. Our proposed method achieves state-of-the-art performance on three cloth-changing benchmarks, demonstrating its superiority over advanced competitors. The code is available at https://github.com/QizaoWang/CSSC-CCReID.
description: Accepted by ICASSP 2025
Supplementary document for Towards Quantum Telescopes: Demonstration of a Two-Photon Interferometer for Quantum-Assisted Astronomy - 6613988.pdf
Creators: name: Crawford, Jesse
name: Dolzhenko, Denis
name: Keach, Michael
name: Mueninghoff, Aaron
name: Abrahao, Raphael
name: Martinez-Rincon, Julian
name: Stankus, Paul
name: Vintskevich, Stepan
name: Nomerotski, Andrei
Publisher: name: Optica Publishing Group
Year: 2025
Subjects: Uncategorized

description: Supplemental document
Additional file 1 of [18F]Fluoride uptake in various bone types and soft tissues in rat
Creators: name: Savisto, Nina
name: Grönroos, Tove J.
name: Oikonen, Vesa
name: Rajander, Johan
name: Löyttyniemi, Eliisa
name: Bergman, Jörgen
name: Forsback, Sarita
name: Solin, Olof
name: Haaparanta-Solin, Merja
Publisher: name: figshare
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified

description: Additional file 1: Fig. S1. Three-compartment model for [18F]fluoride kinetics in bone. Fig. S2. The Patlak graphical analysis and the three-compartment model were applied pixel-by-pixel to the dynamic image data from one rat to produce representative images of Ki and model parameters K1 and k3. Fig. S3. Ex vivo uptake of [18F]fluoride at 15, 30, 60, 120, 240, and 360 min after injection. Fig. S4. A graphical representation of the bone statistical data for K1, Ki and Ki/K1. Table S1 and Table S2.
Muscle Fascicles Exhibit Limited Passive Elongation Throughout the Rehabilitation of Achilles Tendon Rupture After Percutaneous Repair
Creators: name: Agres, Alison
name: Arampatzis, Adamantios
name: Gehlen, Tobias
name: Manegold, Sebastian
name: Duda, Georg N.
Publisher: name: Humboldt-Universität zu Berlin
Year: 2020
Subjects: subject: muscle-tendon unit
subject: achilles tendon rupture
subject: ultrasonography
subject: ultrasound
subject: rehabilitation
subject: achilles tendon – injuries
subject: 610 Medizin und Gesundheit

description: Achilles tendon rupture (ATR) results in long-term functional and structural deficits, characterized by reduced ankle mobility and plantarflexor muscle atrophy. However, it remains unclear how such functional impairments develop after surgical repair. While it is known that this injury negatively affects the tendon’s function, to date, limited work has focused on the short-term effect of ATR on the structure of the muscles in series. The aim of this study was to characterize changes in medial gastrocnemius architecture and its response to passive lengthening during the post-surgical rehabilitative period following ATR. Both injured and contralateral limbs from 10 subjects (1 female, BMI: 27.2 ± 3.9 kg/m2; age: 46 ± 10 years) with acute, unilateral ATR were assessed at 8, 12, and 16 weeks after percutaneous surgical repair. To characterize the component tissues of the muscle-tendon unit, resting medial gastrocnemius muscle thickness, fascicle length, and pennation angle were determined from ultrasound images with the ankle in both maximal plantarflexion and dorsiflexion. The ankle range of motion (ROM) was determined using motion capture; combined ultrasound and motion capture determined the relative displacement of the musculotendinous junction (MTJ) of the AT with the medial gastrocnemius. The ATR-injured gastrocnemius muscle consistently exhibited lower thickness, regardless of time point and ankle angle. Maximal ankle plantarflexion angles and corresponding fascicle lengths were lower on the injured ankle compared to the contralateral throughout rehabilitation. When normalized to the overall ankle ROM, both injured fascicles and MTJ displacement exhibited a comparably lower change in length when the ankle was passively rotated. These results indicate that when both ankles are passively exposed to the same ROM following ATR surgery, both ipsilateral Achilles tendon and gastrocnemius muscle fascicles exhibit limited lengthening compared to the contralateral MTU tissues. This appears to be consistent throughout the rehabilitation of gait, suggesting that current post-operative rehabilitative exercises do not appear to induce muscle adaptations in the affected MTU.
Stochastic Resetting Mitigates Latent Gradient Bias of SGD from Label Noise
Creators: name: Bae, Youngkyoung
name: Song, Yeongwoo
name: Jeong, Hawoong
Publisher: name: arXiv
Year: 2024
Subjects: subject: Machine Learning (cs.LG)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Artificial Intelligence (cs.AI)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences
subject: FOS: Physical sciences

description: Giving up and starting over may seem wasteful in many situations such as searching for a target or training deep neural networks (DNNs). Our study, though, demonstrates that resetting from a checkpoint can significantly improve generalization performance when training DNNs with noisy labels. In the presence of noisy labels, DNNs initially learn the general patterns of the data but then gradually memorize the corrupted data, leading to overfitting. By deconstructing the dynamics of stochastic gradient descent (SGD), we identify the behavior of a latent gradient bias induced by noisy labels, which harms generalization. To mitigate this negative effect, we apply the stochastic resetting method to SGD, inspired by recent developments in the field of statistical physics achieving efficient target searches. We first theoretically identify the conditions where resetting becomes beneficial, and then we empirically validate our theory, confirming the significant improvements achieved by resetting. We further demonstrate that our method is both easy to implement and compatible with other methods for handling noisy labels. Additionally, this work offers insights into the learning dynamics of DNNs from an interpretability perspective, expanding the potential to analyze training methods through the lens of statistical physics.
description: 30 pages, 14 figures
Jump to Conclusions: Short-Cutting Transformers With Linear Transformations
Creators: name: Din, Alexander Yom
name: Karidi, Taelin
name: Choshen, Leshem
name: Geva, Mor
Publisher: name: arXiv
Year: 2023
Subjects: subject: Computation and Language (cs.CL)
subject: FOS: Computer and information sciences

description: Transformer-based language models create hidden representations of their inputs at every layer, but only use final-layer representations for prediction. This obscures the internal decision-making process of the model and the utility of its intermediate representations. One way to elucidate this is to cast the hidden representations as final representations, bypassing the transformer computation in-between. In this work, we suggest a simple method for such casting, using linear transformations. This approximation far exceeds the prevailing practice of inspecting hidden representations from all layers, in the space of the final layer. Moreover, in the context of language modeling, our method produces more accurate predictions from hidden layers, across various model scales, architectures, and data distributions. This allows "peeking" into intermediate representations, showing that GPT-2 and BERT often predict the final output already in early layers. We then demonstrate the practicality of our method to recent early exit strategies, showing that when aiming, for example, at retention of 95% accuracy, our approach saves additional 7.9% layers for GPT-2 and 5.4% layers for BERT. Last, we extend our method to linearly approximate sub-modules, finding that attention is most tolerant to this change. Our code and learned mappings are publicly available at https://github.com/sashayd/mat.
Atom-mediated deterministic generation and stitching of photonic graph states
Creators: name: Aqua, Ziv
name: Dayan, Barak
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Highly-entangled multi-photon graph states are a crucial resource in photonic quantum computation and communication. Yet, the lack of photon-photon interactions makes the construction of such graph states especially challenging. Typically, these states are produced through probabilistic single-photon sources and linear-optics entangling operations that require indistinguishable photons. The resulting inefficiency of these methods necessitates a large overhead in the number of sources and operations, creating a major bottleneck in the photonic approach. Here, we show how harnessing single-atom-based photonic operations can enable deterministic generation of photonic graph states, while also lifting the requirement for photon indistinguishability. To this end, we introduce a multi-gate quantum node comprised of a single atom in a W-type level scheme coupled to an optical resonator. This configuration provides a versatile toolbox for generating graph states, allowing the operation of both the controlled-Z and SWAP photon-atom gates, as well as the deterministic generation of single photons. Furthermore, the ability to deterministically entangle photonic qubits enables expanding the generated state by stitching graphs from different devices. We investigate the implementation of this gate-based approach using $^{87}$Rb atoms and evaluate its performance through numerical simulations.
Spectral Flow for the Riemann zeros
Creators: name: LeClair, André
Publisher: name: arXiv
Year: 2024
Subjects: subject: Mathematical Physics (math-ph)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: High Energy Physics - Theory (hep-th)
subject: Number Theory (math.NT)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: Recently, with Mussardo we defined a quantum mechanical problem of a single particle scattering with impurities wherein the quantized energy levels $E_n (σ)$ are exactly equal to the zeros of the Riemann $ζ(s)$ where $σ= \Re (s)$ in the limit $σ\to 1/2$. The S-matrix is based on the Euler product and is unitary by construction, thus the underlying hamiltonian is hermitian and all eigenvalues must be real. Motivated by the Hilbert-Pólya idea we study the spectral flows for $\{ E_n (σ) \}$. This leads to a simple criterion for the validity of the Riemann Hypothesis. The spectral flow arguments are simple enough that we present analogous results for the Generalized and Grand Riemann Hypotheses. We also illustrate our results for a counter example where the Riemann Hypothesis is violated since there is no underlying unitary S-matrix due to the lack of an Euler product.
description: 18 page. Version 2: fixed some typesetting errors. Also added an argument that the free part of the underlying hamiltonian is hermitian with an energy gap. Version 3: Published version in Advances in Theoretical and Mathematical Physics 2025; includes a study of random matrix statistics off of the critical line
On the weak$^*$ separability of the space of Lipschitz functions
Creators: name: Candido, Leandro
name: Cuth, Marek
name: Vejnar, Benjamin
Publisher: name: arXiv
Year: 2024
Subjects: subject: Functional Analysis (math.FA)
subject: FOS: Mathematics
subject: 46B26, 51F30, 54E50 (primary), and 46B80, 46B20 (secondary)

description: We conjecture that whenever $M$ is a metric space of density at most continuum, then the space of Lipschitz functions is $w^*$-separable. We prove the conjecture for several classes of metric spaces including all the Banach spaces with a projectional skeleton, Banach spaces with a $w^*$-separable dual unit ball and locally separable complete metric spaces.
Additional file 1 of Phosphoproteomic analysis on ovarian follicles reveals the involvement of LSD1 phosphorylation in Chicken follicle selection
Creators: name: Zhang, Yanhong
name: Chen, Qiuyue
name: Guo, Yuanyuan
name: Kang, Li
name: Sun, Yi
name: Jiang, Yunliang
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional File 1: Supplementary table 1. Comparison of the expression level of chicken LSD1 mRNA in small yellow follicles and F6 follicles by RNA-seq.
Supplementary document for Optical-fiber-integrated high-speed organic phototransistor with broadband imaging capacity - 6613992.pdf
Creators: name: Zheng, Xialian
name: Du, Qianqian
name: Zhao, Jing
name: Li, Mengru
name: Liu, Qing
name: Ling, Fengzhe
name: Zhang, Yanxun
name: Wang, Wenjun
name: Wang, Fengqiu
name: Shuchao, Qin
Publisher: name: Optica Publishing Group
Year: 2025
Subjects: Uncategorized

description: supplement
Improving Neural Topic Models with Wasserstein Knowledge Distillation
Creators: name: Adhya, Suman
name: Sanyal, Debarshi Kumar
Publisher: name: arXiv
Year: 2023
Subjects: subject: Computation and Language (cs.CL)
subject: Information Retrieval (cs.IR)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: Topic modeling is a dominant method for exploring document collections on the web and in digital libraries. Recent approaches to topic modeling use pretrained contextualized language models and variational autoencoders. However, large neural topic models have a considerable memory footprint. In this paper, we propose a knowledge distillation framework to compress a contextualized topic model without loss in topic quality. In particular, the proposed distillation objective is to minimize the cross-entropy of the soft labels produced by the teacher and the student models, as well as to minimize the squared 2-Wasserstein distance between the latent distributions learned by the two models. Experiments on two publicly available datasets show that the student trained with knowledge distillation achieves topic coherence much higher than that of the original student model, and even surpasses the teacher while containing far fewer parameters than the teacher's. The distilled model also outperforms several other competitive topic models on topic coherence.
description: Accepted at ECIR 2023
Self_Assessment_Test_Questions_Pharmacogenomics_-_The_Time_is_Now_xyz268532ab00280 – Supplemental material for Basic Concepts in Genetics and Pharmacogenomics for Pharmacists
Creators: name: Orrico, Kathleen B
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: FOS: Clinical medicine

description: Supplemental material, Self_Assessment_Test_Questions_Pharmacogenomics_-_The_Time_is_Now_xyz268532ab00280 for Basic Concepts in Genetics and Pharmacogenomics for Pharmacists by Kathleen B Orrico in Drug Target Insights
Proper Scoring Rules for Multivariate Probabilistic Forecasts based on Aggregation and Transformation
Creators: name: Pic, Romain
name: Dombry, Clément
name: Naveau, Philippe
name: Taillardat, Maxime
Publisher: name: arXiv
Year: 2024
Subjects: subject: Methodology (stat.ME)
subject: Statistics Theory (math.ST)
subject: Applications (stat.AP)
subject: FOS: Computer and information sciences
subject: FOS: Mathematics

description: Proper scoring rules are an essential tool to assess the predictive performance of probabilistic forecasts. However, propriety alone does not ensure an informative characterization of predictive performance and it is recommended to compare forecasts using multiple scoring rules. With that in mind, interpretable scoring rules providing complementary information are necessary. We formalize a framework based on aggregation and transformation to build interpretable multivariate proper scoring rules. Aggregation-and-transformation-based scoring rules are able to target specific features of the probabilistic forecasts; which improves the characterization of the predictive performance. This framework is illustrated through examples taken from the literature and studied using numerical experiments showcasing its benefits. In particular, it is shown that it can help bridge the gap between proper scoring rules and spatial verification tools.
description: for associated code, see https://github.com/pic-romain/aggregation-transformation
Supplemental Material, Table_S1_Baseline_of_study_characteristics - Prostate Cancer Diagnosis Using Urine Sediment Analysis-Based α-Methylacyl-CoA Racemase Score: A Single-Center Experience
Creators: name: Ji, Jin
name: Chen, Xi
name: Xu, Yalong
name: Cao, Zhi
name: Xu, Huan
name: kong, Chen
name: Wang, Fubo
name: Sun, Yinghao
Publisher: name: SAGE Journals
Year: 2019
Subjects: Oncology and Carcinogenesis not elsewhere classified

description: Supplemental Material, Table_S1_Baseline_of_study_characteristics for Prostate Cancer Diagnosis Using Urine Sediment Analysis-Based α-Methylacyl-CoA Racemase Score: A Single-Center Experience by Jin Ji, Xi Chen, Yalong Xu, Zhi Cao, Huan Xu, Chen kong, Fubo Wang and Yinghao Sun in Cancer Control
A Multiparty Quantum Private Equality Comparison scheme relying on $\ket{ GHZ_{ 3 } }$ states
Creators: name: Andronikos, Theodore
name: Sirokofskich, Alla
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: This paper introduces an innovative entanglement-based protocol that accomplishes multiparty quantum private comparison leveraging maximally entangled GHZ3 triplets. The primary motivation is the design of a protocol that can be executed by contemporary quantum computers. This is made possible because the protocol uses only GHZ3 triplets, irrespective of the number of millionaires. While more complex multi-particle entangled states are possible, they are challenging to produce with existing quantum apparatus, leading to extended preparation time and complexity, particularly in scenarios involving numerous participants. By relying on GHZ3 states, which are the easiest to produce after Bell states, we avoid these drawbacks, and take a step towards the practical implementation of the protocol. An important quantitative characteristic of this protocol is that the required quantum resources are linear both in the number of millionaires and the volume of information to be compared. A notable aspect of the protocol is its suitability for both parallel and sequential execution. Although the execution of the quantum part of the protocol is envisioned to take place completely in parallel, it is also possible to be implemented sequentially. So, if the quantum resources do not suffice for the execution of the protocol in one go, it is possible to partition the millionaires into smaller groups and process these groups sequentially. Notably, our protocol involves two third parties; Trent is now accompanied by Sophia. This dual setup allows simultaneous processing of all n millionaires' fortunes. Implementation-wise, uniformity is ensured as all millionaires use similar private quantum circuits composed of Hadamard and CNOT gates. Lastly, the protocol is information-theoretically secure, preventing outside parties from learning about fortunes or inside players from knowing each other's secret numbers.
title: BL Fandom Survey
Creators: name: Madill, Anna
Publisher: name: University of Leeds
Year: 2020
Subjects: subject: FOS: Psychology

description: Hello! My name is Anna. I am a fan of Boys' Love (BL) and an academic at the University of Leeds in the UK. This survey is for English-speaking BL fans. BL (also known as yaoi and including shonen-ai) originated in Japan and consists of female-oriented products such a manga, anime, and novels that focus on homoerotic relationships. By completing this survey you will be helping promote understanding of the BL fandom. The survey does not ask your name and I will not know who has completed it. I have ethical approval to conduct this research from my University: Ethics approval number 14-0210, 30th October 2014. This survey will take about 10 minutes to complete. Most questions just ask you to select an answer from a few options. However, there is sometimes space for you to explain your answer in your own words - but you can chose to complete as many or as few as these as you want. The survey has five sections: (A) demographics, (B) BL materials, (C) feelings about BL, (D) social relationships, and (E) other erotic materials. You can skip any question in section E you don't want to answer and can skip the whole of section E if you want. I will just be very grateful for any information you are willing to share with me about your interest in BL. There is space at the end for you to describe anything important to you about BL/yaoi/shonen-ai that has been missed from the survey, if you like.
Disentangling sources of momentum fluctuations in Xe+Xe and Pb+Pb collisions with the ATLAS detector
Creators: name: ATLAS Collaboration
Publisher: name: arXiv
Year: 2024
Subjects: subject: Nuclear Experiment (nucl-ex)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: High-energy nuclear collisions create a quark-gluon plasma, whose initial condition and subsequent expansion vary from event to event, impacting the distribution of the event-wise average transverse momentum ($P([p_{\mathrm{T}}])$). Distinguishing between contributions from fluctuations in the size of the nuclear overlap area (geometrical component) and other sources at fixed size (intrinsic component) presents a challenge. Here, these two components are distinguished by measuring the mean, variance, and skewness of $P([p_{\mathrm{T}}])$ in $^{208}$Pb+$^{208}$Pb and $^{129}$Xe+$^{129}$Xe collisions at $\sqrt{s_{\mathrm{NN}}} = 5.02$ and 5.44 TeV, respectively, using the ATLAS detector at the LHC. All observables show distinct changes in behavior in ultra-central collisions, where the geometrical variations are suppressed as the overlap area reaches its maximum. These results demonstrate a new technique to disentangle geometrical and intrinsic fluctuations, enabling constraints on initial condition and properties of the quark-gluon plasma, such as the speed of sound.
description: 34 pages in total, author list starting page 17, 7 figures, no tables. All figures including auxiliary figures are available at https://atlas.web.cern.ch/Atlas/GROUPS/PHYSICS/PAPERS/HION-2021-20/