cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Impact of pump wavelength on terahertz emission of a cavity-enhanced spintronic trilayer
Creators: name: Herapath, Rosamund I.
name: Hornett, Sam M.
name: Seifert, T.
name: Jakob, Gerhard
name: Kläui, Mathias
name: Bertolotti, Jacopo
name: Kampfrath, T.
name: Hendry, Euan
Publisher: name: arXiv
Year: 2018
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We systematically study the pump-wavelength dependence of terahertz pulse generation in thin-film spintronic THz emitters composed of a ferromagnetic Fe layer between adjacent nonmagnetic W and Pt layers. We find that the efficiency of THz generation is essentially at for excitation by 150 fs pulses with center wavelengths ranging from 900 to 1500 nm, demonstrating that the spin current does not depend strongly on the pump photon energy. We show that the inclusion of dielectric overlayers of TiO2 and SiO2, designed for a particular excitation wavelength, can enhance the terahertz emission by a factor of of up to two in field.
description: 7 pages including 2 supplementary
Approximate Ginzburg-Landau solution for the regular flux-line lattice. Circular cell method
Creators: name: Pogosov, W. V.
name: Kugel, K. I.
name: Rakhmanov, A. L.
name: Brandt, E. H.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: A variational model is proposed to describe the magnetic properties of type-II superconductors in the entire field range between $H_{c1}$ and $H_{c2}$ for any values of the Ginzburg-Landau parameter $κ>1/\sqrt{2}$. The hexagonal unit cell of the triangular flux-line lattice is replaced by a circle of the same area, and the periodic solutions to the Ginzburg-Landau equations within this cell are approximated by rotationally symmetric solutions. The Ginzburg-Landau equations are solved by a trial function for the order parameter. The calculated spatial distributions of the order parameter and the magnetic field are compared with the corresponding distributions obtained by numerical solution of the Ginzburg-Landau equations. The comparison reveals good agreement with an accuracy of a few percent for all $κ$ values exceeding $κ\approx 1$. The model can be extended to anisotropic superconductors when the vortices are directed along one of the principal axes. The reversible magnetization curve is calculated and an analytical formula for the magnetization is proposed. At low fields, the theory reduces to the London approach at $κ\gg 1$, provided that the exact value of $H_{c1}$ is used. At high fields, our model reproduces the main features of the well-known Abrikosov theory. The magnetic field dependences of the reversible magnetization found numerically and by our variational method practically coincide. The model also refines the limits of some approximations which have been widely used. The calculated magnetization curves are in a good agreement with experimental data on high-T$_c$ superconductors.
description: 8 pages, RevTex, 6 figures, submitted to Phys. Rev. B
An apoptotic body-inspired nanoparticle to modulate inflammatory macrophages
Creators: name: Kraynak, Chelsea Amanda
name: 0000-0003-2659-5113
Publisher: name: The University of Texas at Austin
Year: 2021
Subjects: Nanoparticle
Macrophage
Apoptosis
Inflammation
Phosphatidylserine

description: Chronic inflammation is a significant pathological process found in a range of disease states. Treatments to reduce inflammation in this family of diseases may improve symptoms and disease progression, but are largely limited by variable response rates, cost, and off-target effects. Macrophages are implicated in many inflammatory diseases for their critical role in the maintenance and resolution of inflammation. Macrophages exhibit significant plasticity to direct the inflammatory response by taking on an array of pro- and anti-inflammatory phenotypes based on extracellular cues. One robust anti-inflammatory physiologic cue is the engulfment of apoptotic cells. In this work, we have developed a nanoparticle to target and reduce macrophage-mediated inflammation by mimicking the anti-inflammatory effect of apoptotic cell engulfment. The nanoparticle, comprised of a poly(lactide-co-glycolide) core, is coated in phosphatidylserine (PS)-supplemented cell plasma membrane to emulate key characteristics of the apoptotic cell surface. We demonstrate that this particle can reduce the production of pro-inflammatory cytokines and drive an anti-inflammatory phenotype shift without the use of small molecules or other drugs. We additionally functionalized the particle surface with an acid-sensitive polyethylene glycol (PEG) moiety to increase the delivery of our particles to sites of chronic inflammation in a mouse model. Particles are preferentially taken up by macrophages at the site of inflammation to promote an anti-inflammatory phenotype shift. The development of a nanoparticle to drive this pro-to-anti-inflammatory macrophage phenotype transition, through the use of a physiologic anti-inflammatory pathway, illustrates a new potential strategy in the design of therapeutics for chronic inflammation.
title: TimeLighting: Guidance-enhanced Exploration of 2D Projections of Temporal Graphs
Creators: name: Filipov, Velitchko
name: Ceneda, Davide
name: Archambault, Daniel
name: Arleo, Alessio
Publisher: name: TU Wien
Year: 2024
Subjects: Temporal Graphs
Space-time cube
Dynamic Network Visualization
Visual Analytics.

description: In temporal (or event-based) networks, time is a continuous axis, with real-valued time coordinates for each node and edge. Computing a layout for such graphs means embedding the node trajectories and edge surfaces over time in a 2D + t space, known as the space-time cube. Currently, these space-time cube layouts are visualized through animation or by slicing the cube at regular intervals. However, both techniques present problems ranging from sub-par performance on some tasks to loss of precision. In this paper, we present TimeLighting, a novel visual analytics approach to visualize and explore temporal graphs embedded in the space-time cube. Our interactive approach highlights the node trajectories and their mobility over time, visualizes node "aging", and provides guidance to support users during exploration. We evaluate our approach through two case studies, showing the system's efficacy in identifying temporal patterns and the role of the guidance features in the exploration process.
3D characterization of ventricular myocardium in health, disease, and treatment
Creators: name: Li, David Shuen
name: 0000-0002-6489-0191
Publisher: name: The University of Texas at Austin
Year: 2021
Subjects: Cardiac biomechanics
Constitutive modeling
Finite element simulation

description: Cardiovascular diseases such as myocardial infarction and pulmonary arterial hypertension cause maladaptive remodeling of the heart, which drastically alters its function and progresses toward heart failure. Determining the mechanical drivers of remodeling, as well as therapeutic targets for its amelioration, is hampered by insufficient knowledge of the biomechanical environment of the myocardium at the tissue and cellular scales. Modeling of myocardial behavior has enabled the quantification of its mechanics and the in silico evaluation of cardiac disease therapies, but predictive models that account for full 3D mechanics are still lacking, facing hurdles in terms of (i) available experimental data from which to develop models, and (ii) understanding the complex mechanical behavior and interactions of constituents within the tissue. Clinical treatment strategies also depend on the critical link between organ-level function and the cellular-level microenvironment, necessitating multiscale modeling approaches in order to connect the two. To this end, the research presented in this dissertation focuses on both addressing current challenges in tissue-scale myocardial modeling as well as taking a first step in relating myocardial properties between the tissue and cellular scales. This work combines 3D modeling-driven optimal experimental design, multiaxial mechanical testing, high-resolution imaging, and finite element simulation. Through use of these integrated approaches, we achieve robust characterization of normal and diseased myocardium at the tissue scale within a full 3D framework. Next, we present a multiscale modeling platform for ventricular myocardium to elucidate cellular-scale stress transfer between myofibers and their surroundings, allowing for investigation of fiber-specific microstructural remodeling in response to disease. This research provides a foundation for improved models of myocardium capable of accurate prediction of therapeutic impacts on cell-, tissue-, and organ-level remodeling, ultimately aiding the development of patient-specific interventions and improvement of therapeutic outcomes.
Transcriptome-based stemness indices analysis reveals platinum-based chemo-theraputic response indicators in advanced-stage serous ovarian cancer
Creators: name: Sun, Xinwei
name: Liu, Qingyu
name: Huang, Jie
name: Diao, Ge
name: Liang, Zhiqing
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Plant Biology
subject: Computational Biology

description: Serous ovarian cancer (SOC) is a main histological subtype of ovarian cancer, in which cancer stem cells (CSC) are responsible for its chemoresistance. However, the underlying modulation mechanisms of chemoresistance led by cancer stemness are still undefined. We aimed to investigate potential drug-response indicators among stemness-associated biomarkers in advanced SOC samples. The mRNA expression-based stemness index (mRNAsi) of The Cancer Genome Atlas (TCGA) was evaluated and corrected by tumor purity. Weighted gene co-expression network analysis (WGCNA) was utilized to explore the gene modules and key genes involved in stemness characteristics. We found that mRNAsi and corrected mRNAsi scores were both greater in tumors of Grade 3 and 4 than that of Grade 1 and 2. Forty-two key genes were obtained from the most significant mRNAsi-related gene module. Functional annotation revealed that these key genes were mainly involved in the mitotic division. Thirteen potential platinum-response indicators were selected from the genes enriched to platinum-response associated pathways. Among them, we identified 11 genes with prognostic value of progression-free survival (PFS) in advanced SOC patients treated with platinum and 7 prognostic genes in patients treated with a combination of platinum and taxol. The expressions of the 13 key genes were also validated between platinum-resistant and -sensitive SOC samples of advanced stages in two Gene Expression Omnibus (GEO) datasets. The results revealed that CDC20 was a potential platinum-sensitivity indicator in advanced SOC. These findings may provide a new insight for chemotherapies in advanced SOC patients clinically.
Quantum model for Impulsive Stimulated Raman Scattering
Creators: name: Glerean, Filippo
name: Marcantoni, Stefano
name: Sparapassi, Giorgia
name: Blason, Andrea
name: Esposito, Martina
name: Benatti, Fabio
name: Fausti, Daniele
Publisher: name: arXiv
Year: 2018
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The interaction between ultrashort light pulses and non-absorbing materials is dominated by Impulsive Stimulated Raman Scattering (ISRS). The description of ISRS in the context of pump\&probe experiments is based on effective classical models describing the interaction between the phonon and pulsed electromagnetic fields. Here we report a theoretical description of ISRS where we do not make any semi-classical approximation and we treat both photonic and phononic degrees of freedom at the quantum level. The results of the quantum model are compared with semiclassical results and validated by means of spectrally resolved pump\&probe measurements on $α$-quartz.
description: Includes supplementary material
Cerbera mangas Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Gentianales
Apocynaceae
Cerbera
Cerbera mangas

description: Cerbera manghas Linnaeus, Species Plantarum 1: 208. 1753.
"Habitat in Indiis ad aquas." RCN: 1707.
 Lectotype (Huber in Abeywickrama, Revised Handb. Fl. Ceylon 1(1): 18. 1973): Herb. Hermann 5: 70, No. 106 [icon] (BM).
 Generitype of Cerbera Linnaeus.
 Current name:  Cerbera mangas  L. (Apocynaceae).
 Note: Cerbera manghas, with Herb. Linn. No. 298.2 (LINN) as the type, was proposed as conserved type of the genus by Jarvis (in Taxon 41: 560. 1992). However, the proposal was eventually ruled unnecessary by the General Committee (see Barrie, l.c. 55: 795-796. 2006 for a review of the history of this and related proposals). Huber’s (1973) type choice of a Hermann drawing, however, pre-dates that of 298.2 (LINN) by Leeuwenberg (in Jarvis, l.c. 41: 560. 1992) and becomes the correct choice with the failure of the conservation proposal.
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part C), pp. 370-473 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 405, DOI: 10.5281/zenodo.291971
The LANER: optical networks as complex lasers
Creators: name: Giacomelli, Giovanni
name: Lepri, Stefano
name: Trono, Cosimo
Publisher: name: arXiv
Year: 2018
Subjects: subject: Optics (physics.optics)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: We discuss the main features of a new optical system capable of laser action: the active complex optical network, or lasing network (LANER). The system is experimentally realized with optical fibers linked each other with suitable optical couplers and with one or more coherent optical amplifying sections. The LANER displays a standard laser behavior: when the gain provided by the active sections is high enough to overcome the losses a coherent emission is produced, with a complicated intensity spectrum reflecting the structure of the network. A simple linear theoretical description is introduced and discussed, showing how the LANER can be considered as a generalization of the laser for a complicated cavity represented by the network itself. The system can be mapped to directed graphs and permits to disclosure the analogies with the problem of quantum chaos on graphs. In the case the links are all integer multiples of the same length, it is shown that the LANER framework corresponds to a lattice problem, with the equivalence of the Brillouin zone with the cavity Free Spectral Range. Experimental realizations of different configurations are presented and examples of spectra are reported, in a phenomenological agreement with the numerical findings of the theory.
description: Submitted to Phys.Rev.E
Properties and superconductivity in Ti-doped NiTe2 single crystals
Creators: name: de Lima, B. S.
name: de Cassia, R. R.
name: Santosa, F. B.
name: Correa, L. E.
name: Grant, T. W.
name: Manesco, A. L. R.
name: Eleno, G. W. Martins L. T. F.
name: Torikachvili, M. S.
name: Machado, A. J. S.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: Transition metal dichalcogenides (TMDs) usually show simple structures, however, with interesting properties. Recently some TMDs have been pointed out as type-II Dirac semimetals. In the present work, we investigate the physical properties of a new candidate for type-II Dirac semimetal and investigate the effect of titanium doping on physical properties of Ti-doped single crystalline samples of NiTe2. It was found that this compound shows a superconducting properties with a critical temperature close to 4.0 K. Interestingly, applied pressures up to 1.3 GPa have no effect upon the superconducting state. Density Functional Theory (DFT) calculations demonstrate the presence of a Dirac cone in the band structure of NiTe2 literature when Spin-Orbit Coupling (SOC) is included, which is in agreement with a recent report for this compound. Also, our calculations demonstrate that Ti suppresses the formation of these non-trivial states.
Characterizing bias on large scale CMB $B$-modes after galactic foregrounds cleaning
Creators: name: Errard, Josquin
name: Stompor, Radek
Publisher: name: arXiv
Year: 2018
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We study the performance of a typical near-future full sky CMB space mission, aiming at the characterization of the large scale $B$-modes polarization anisotropies with precision on $r\sim 0.001$, after a map-based parametric cleaning of galactic dust and synchrotron, and in the case of spatially varying astrophysical spectral emission laws. Ignoring the spatial variability of the spectral emission laws may result in a bias on $r$ as high as $\mathcal{O}(0.01)$ for realistic models of the variability. However, we show that the component separation formalism can be extended to suppress this bias efficiently. We demonstrate this within the context of the semianalytic formalism of~\citep{Stompor2016}, which we generalize to such cases and use it to propagate the foreground residuals to a cosmological likelihood on tensor-to-scalar ratio, $r$. In particular, we investigate the effects due to introducing extra, independent sets of scaling parameters for different sky areas and including additional scaling parameters per sky area. We then show that the residuals resulting in such cases can be efficiently described with help of extra terms introduced in a model of the covariance of the component-separated CMB maps and which lead to suppression of the bias on $r$ down to the level lower than the expected statistical uncertainty. We discuss how these additional terms can be constructed self-consistently from the available data.
description: 17 pages, 10 figures
Additional file 6: of Safety, activity, and molecular heterogeneity following neoadjuvant non-pegylated liposomal doxorubicin, paclitaxel, trastuzumab, and pertuzumab in HER2-positive breast cancer (Opti-HER HEART): an open-label, single-group, multicenter, phase 2 trial
Creators: name: Gavilá, Joaquín
name: Oliveira, Mafalda
name: Pascual, Tomás
name: Perez-Garcia, Jose
name: Gonzàlez, Xavier
name: Canes, Jordi
name: Paré, Laia
name: Calvo, Isabel
name: Ciruelos, Eva
name: Muñoz, Montserrat
name: Virizuela, Juan
name: Ruiz, Isabel
name: Andrés, Raquel
name: Perelló, Antonia
name: Martínez, Jerónimo
name: Serafín Morales
name: Marín-Aguilera, Mercedes
name: Martínez, Débora
name: Quero, Juan
name: Llombart-Cussac, Antonio
name: Aleix Prat
Publisher: name: figshare
Year: 2019
Subjects: Space Science
Medicine
Cancer
Science Policy
Computational Biology

description: Table S2. Rates of pathological complete response (pCR) reported across 15 published neoadjuvant clinical trials in HER2-positive breast cancer. (PDF 283 kb)
The Who's Who in Plastic Marine Pollution
Creators: name: Khoder, Mohamad
name: Hobeika, Nelly
Publisher: name: Zenodo
Year: 2018
Subjects: Plastics, Microplastics, Characterization, Pyrolysis, Fuel oil

description: Plastic products are used widely in all industries and in our daily lives. This ubiquity of these degradation-resistant plastic products, however, has led to many environmental issues, including the serious impact on marine ecology. Marine litter loads in sea compartments are an emergent issue due to their ecological and biological consequences. In fact, the pollution caused by microplastics (MPs) particles size <5 mm) in seas and fresh water is of growing environmental concern due to their slow degradability, biological ingestion by fish and other aquatic living organisms, that impact the food chains and potentially cause humans serious health problems. This study aims to assess and quantify the microplastics in sea water, by doing a characterization study in the LU laboratories of water samples from the Mediterranean sea. Finally, suggest a solution by modeling a simulation on ASPEN PLUS of a pyrolysis to convert collected household plastic into fuel oil and gas.
Thevetia peruviana K. Schum.
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Gentianales
Apocynaceae
Thevetia
Thevetia peruviana

description: Cerbera thevetia Linnaeus, Species Plantarum 1: 209. 1753.
"Habitat in America calidiore." RCN: 1708.
 Lectotype (Lippold in Feddes Repert. 91: 52. 1980): [icon] " Cerbera floliis linearibus, longissimus" in Plumier, Codex Boerhaavianus (University Library, Groningen).
 Current name:  Thevetia peruviana  (Pers.) K. Schum. (Apocynaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part C), pp. 370-473 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 405, DOI: 10.5281/zenodo.291971
Factorization is not violated
Creators: name: Collins, John C.
name: Soper, Davison E.
name: Sterman, George
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We show that existing proofs of factorization imply the cancellation of certain multiladder contributions that Gotsman, Levin, and Maor had suggested would invalidate the basic factorization theorem in QCD. No modifications of the original argument are necessary, although the details of the example offer useful insight into the mechanisms of factorization.
description: 11 pages including 10 figures
title: ADCO, Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome IX, Cart. 193 (11 H 78), f. 0143v
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: cartulaire

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome IX, Archives départementales de la Côte-d'Or, Cart. 193 (11 H 78), f. 0143v, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome IX, Archives départementales de la Côte-d'Or, Cart. 193 (11 H 78), f. 0143v, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Multiplexed Holographic Aperture Masking with liquid-crystal geometric phase masks
Creators: name: Doelman, David S.
name: Tuthill, Peter
name: Norris, Barnaby
name: Wilby, Michael J.
name: Por, Emiel H.
name: Keller, Christoph U.
name: Escuti, Michael J.
name: Snik, Frans
Publisher: name: arXiv
Year: 2018
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: Sparse Aperture Masking (SAM) allows for high-contrast imaging at small inner working angles, however the performance is limited by the small throughput and the number of baselines. We present the concept and first lab results of Holographic Aperture Masking (HAM) with extreme liquid-crystal geometric phase patterns. We multiplex subapertures using holographic techniques to combine the same subaperture in multiple non-redundant PSFs in combination with a non-interferometric reference spot. This way arbitrary subaperture combinations and PSF configurations can be realized, giving HAM more uv-coverage, better throughput and improved calibration as compared to SAM, at the cost of detector space.
description: Presented at the 2018 SPIE Astronomical Telescopes + Instrumentation, Austin, Texas, USA
Depth with Nonlinearity Creates No Bad Local Minima in ResNets
Creators: name: Kawaguchi, Kenji
name: Bengio, Yoshua
Publisher: name: arXiv
Year: 2018
Subjects: subject: Machine Learning (stat.ML)
subject: Artificial Intelligence (cs.AI)
subject: Machine Learning (cs.LG)
subject: Optimization and Control (math.OC)
subject: FOS: Computer and information sciences
subject: FOS: Mathematics

description: In this paper, we prove that depth with nonlinearity creates no bad local minima in a type of arbitrarily deep ResNets with arbitrary nonlinear activation functions, in the sense that the values of all local minima are no worse than the global minimum value of corresponding classical machine-learning models, and are guaranteed to further improve via residual representations. As a result, this paper provides an affirmative answer to an open question stated in a paper in the conference on Neural Information Processing Systems 2018. This paper advances the optimization theory of deep learning only for ResNets and not for other network architectures.
Additional file 1: of Discontinuation of adjuvant hormone therapy among breast cancer patients not previously attending mammography screening
Creators: name: He, Wei
name: Eriksson, Louise
name: TĂśrnberg, Sven
name: Strand, Fredrik
name: Hall, Per
name: Czene, Kamila
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Mental Health
subject: Hematology

description: Table S1. Hazard ratio (HR) and 95% confidence intervals (95% CIs) for discontinuation of adjuvant hormone therapy and breast cancer events derived from competing risk regression models. Discontinuation of adjuvant hormone therapy and breast cancer events in women diagnosed with breast cancer in Stockholm, Sweden, 2001â 2008. (A) Screening non-participants vs participants; (B) screening non-participants vs participants diagnosed with screen-detected cancers; (C) screening non-participants vs participants diagnosed with interval cancers. Hazard ratio (HR) and 95% confidence intervals (95% CIs) were derived from competing risk regression models. (DOCX 13 kb)
Additional file 5: of Safety, activity, and molecular heterogeneity following neoadjuvant non-pegylated liposomal doxorubicin, paclitaxel, trastuzumab, and pertuzumab in HER2-positive breast cancer (Opti-HER HEART): an open-label, single-group, multicenter, phase 2 trial
Creators: name: Gavilá, Joaquín
name: Oliveira, Mafalda
name: Pascual, Tomás
name: Perez-Garcia, Jose
name: Gonzàlez, Xavier
name: Canes, Jordi
name: Paré, Laia
name: Calvo, Isabel
name: Ciruelos, Eva
name: Muñoz, Montserrat
name: Virizuela, Juan
name: Ruiz, Isabel
name: Andrés, Raquel
name: Perelló, Antonia
name: Martínez, Jerónimo
name: Serafín Morales
name: Marín-Aguilera, Mercedes
name: Martínez, Débora
name: Quero, Juan
name: Llombart-Cussac, Antonio
name: Aleix Prat
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Figure S3. Effect of 14 single genes on pathological complete response (pCR) adjusting for clinicopathological parameters. (PDF 184 kb)
Superconductivity in Hexagonal BaPtAs: SrPtSb- and YPtAs-type Structures with Ordered Honeycomb Network
Creators: name: Kudo, Kazutaka
name: Takeuchi, Takaaki
name: Ota, Hiromi
name: Saito, Yuki
name: Ayukawa, Shin-ya
name: Fujimura, Kazunori
name: Nohara, Minoru
Publisher: name: arXiv
Year: 2018
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: The crystal structure and superconductivity of hexagonal BaPtAs are reported. Single-crystal X-ray diffraction, magnetization, electrical resistivity, and specific heat measurements were performed in this study. Two hexagonal structures with different PtAs honeycomb network stacking sequences, namely, SrPtSb- (space group $P\bar{6}m2$, $D_{3h}^1$, No. 187) and YPtAs-type ($P6_3/mmc$, $D_{6h}^4$, No. 194) structures, were identified and found to exhibit superconductivity at 2.8 and 2.1-3.0 K, respectively. In contrast, the cubic LaIrSi-type structure ($P2_13$, $T^4$, No. 198) did not exhibit superconductivity above 0.1 K. BaPtAs provides a unique opportunity to study superconductivity with broken and preserved spatial inversion symmetry.
description: 8 pages, 7 figures, 2 tables
Cercis canadensis Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Cercis
Cercis canadensis

description: Cercis canadensis Linnaeus, Species Plantarum 1: 374. 1753.
"Habitat in Virginia." RCN: 2946.
 Lectotype (Reveal in Turland & Jarvis in Taxon 46: 466. 1997): Kalm, Herb. Linn. No. 524.2 (LINN).
 Current name:  Cercis canadensis  L. (Fabaceae: Caesalpinioideae).
 Note: Although Isely (in Mem. New York Bot. Gard. 25(2): 210. 1975) noted specimens in both LINN and BM, either of which he felt would be a reasonable choice as lectotype, he made no formal choice himself.
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part C), pp. 370-473 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 405, DOI: 10.5281/zenodo.291971
Additional file 1: of Non-inferiority of dose reduction versus standard dosing of TNF-inhibitors in axial spondyloarthritis
Creators: name: Gratacós, Jordi
name: Pontes, Caridad
name: Juanola, Xavier
name: Sanz, Jesús
name: Torres, Ferran
name: Avendaño, Cristina
name: Vallano, Antoni
name: Calvo, Gonzalo
name: Miguel, Eugenio
name: Sanmartí, Raimon
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Table S1. Baseline characteristics, subset with inflammatory biomarkers. Table S2. Baseline predictors of loss of low disease activity at 1 year in the logistic regression analysis. Table S3. Univariate methods for loss of low disease activity at 1 year– subset with inflammatory biomarkers. Table S4. Listing of infectious adverse events. (DOCX 38 kb)
Observation of photon droplets and their dynamics
Creators: name: Wilson, Kali E.
name: Westerberg, Niclas
name: Valiente, Manuel
name: Duncan, Callum W.
name: Wright, Ewan M.
name: Öhberg, Patrik
name: Faccio, Daniele
Publisher: name: arXiv
Year: 2018
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We present experimental evidence of photon droplets in an attractive (focusing) nonlocal nonlinear medium. Photon droplets are self-bound, finite-sized states of light that are robust to size and shape perturbations due to a balance of competing attractive and repulsive forces. It has recently been shown theoretically, via a multipole expansion of the nonlocal nonlinearity, that the self-bound state arises due to competition between the s-wave and d-wave nonlinear terms, together with diffraction. The theoretical photon droplet framework encompasses both a soliton-like stationary ground state and the non-soliton-like dynamics that ensue when the system is displaced from equilibrium, i.e. driven into an excited state. We present numerics and experiments supporting the existence of these photon droplet states and measurements of the dynamical evolution of the photon droplet orbital angular momentum.
description: 6 pages (inc. supplemental), 7 figures
Additional file 8: of Comprehensive investigation of the gene expression system regulated by an Aspergillus oryzae transcription factor XlnR using integrated mining of gSELEX-Seq and microarray data
Creators: name: Oka, Hiroya
name: Kojima, Takaaki
name: Ihara, Kunio
name: Kobayashi, Tetsuo
name: Nakano, Hideo
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: Figure S4. Summits of peaks detected using gSELEX-Seq in the promoter regions of xynF1, xynG1, xynG2, xylA, celA, celB, celC and celD. gSELEX-Seq peaks were detected using MACS (v1.4.2). Blue squares indicate the summits of the peaks. Red square frames indicate canonical XlnR binding motifs. (DOCX 278 kb)
Exploring the effects of increased socket-residual limb coupling integrity via vacuum assisted suspension on prosthetic control: a preliminary study in transtibial prosthesis users
Creators: name: Kent, Jenny A.
name: Carnahan, Kristin J.
name: Major, Matthew J.
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Mental Health

description: The prosthetic socket provides the critical interface between prosthesis and residuum. The purpose of this pilot study was to explore the effect of altering socket-residuum coupling integrity on limb and body control, through the use of vacuum-assisted suspension. A secondary purpose was to explore the potential use of two measurement tools designed to assess mobility in a clinical context. Individuals with unilateral transtibial amputation performed intentional sway (n = 7) and treadmill walking (n = 6) tasks at three vacuum levels. Sway deviation from a straight-line path to peripheral targets was measured using an instrumented balance platform. Step width variability and targeting accuracy were measured using an augmented reality treadmill. There was a significant difference in intentional sway performance toward the target on the anterior diagonal toward the prosthetic side (p = 0.036); higher vacuum levels tended toward less deviation from a straight-line path. We found no group differences between total intentional sway deviation, step width variability or stepping accuracy across vacuum levels. Improved socket-residuum coupling integrity via vacuum may have measurable effects on functional control that warrant further investigation. We highlight limitations of the clinical testing paradigms to inform future work.Implications for rehabilitationThe fit of the socket is a critical factor in the success of lower limb prosthesis use.Vacuum-assisted suspension modifies the coupling between the residuum and socket.Changes in socket-residuum coupling may lead to measurable differences in control; however, these may be activity and person-specific.Clinically intended instrumented tests of movement function derived for an intact anatomy should be used with caution when assessing prosthesis users. The fit of the socket is a critical factor in the success of lower limb prosthesis use. Vacuum-assisted suspension modifies the coupling between the residuum and socket. Changes in socket-residuum coupling may lead to measurable differences in control; however, these may be activity and person-specific. Clinically intended instrumented tests of movement function derived for an intact anatomy should be used with caution when assessing prosthesis users.
title: EuroMicropH Open Meeting: Understanding and Exploiting the Impacts of Low pH on Micro-organisms. Programme and Abstracts
Creators: name: Steiger, Matthias
name: De Biase, Daniela
name: Lund, Peter
Publisher: name: TU Wien
Year: 2023
Subjects: EuroMicropH
low pH
COST action
stress response
industrial biotechnology and bio-processing
microbiology of food and drink processing
clinical applications of microbial responses to low pH

description: Abstract book of the Open Meeting of the COST Action CA18113 EuroMicropH, September 2023, Vienna
Novel Strongly Spin-Orbit Coupled Quantum Dimer Magnet: Yb$_2$Si$_2$O$_7$
Creators: name: Hester, Gavin
name: Nair, H. S.
name: Reeder, T.
name: Yahne, D. R.
name: DeLazzer, T. N.
name: Berges, L.
name: Ziat, D.
name: Neilson, J. R.
name: Aczel, A. A.
name: Sala, G.
name: Quilliam, J. A.
name: Ross, K. A.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: The quantum dimer magnet (QDM) is the canonical example of quantum magnetism. The QDM state consists of entangled nearest-neighbor spin dimers and often exhibits a field-induced triplon Bose-Einstein condensate (BEC) phase. We report on a new QDM in the strongly spin-orbit coupled, distorted honeycomb-lattice material Yb$_2$Si$_2$O$_7$. Our single crystal neutron scattering, specific heat, and ultrasound velocity measurements reveal a gapped singlet ground state at zero field with sharp, dispersive excitations. We find a field-induced magnetically ordered phase reminiscent of a BEC phase, with exceptionally low critical fields of $H_{c1} \sim 0.4$ T and $H_{c2} \sim 1.4$ T. Using inelastic neutron scattering in an applied magnetic field we observe a Goldstone mode (gapless to within $δE$ = 0.037 meV) that persists throughout the entire field-induced magnetically ordered phase, suggestive of the spontaneous breaking of U(1) symmetry expected for a triplon BEC. However, in contrast to other well-known cases of this phase, the high-field ($μ$$_0$$H\geq1.2$T) part of the phase diagram in Yb$_2$Si$_2$O$_7$ is interrupted by an unusual regime signaled by a change in the field dependence of the ultrasound velocity and magnetization, as well as the disappearance of a sharp anomaly in the specific heat. These measurements raise the question of how anisotropy in strongly spin-orbit coupled materials modifies the field induced phases of QDMs.
description: 6 pages, 4 figures, 12 pages of Supplemental Information, 15 Supplemental figures. Updated to published version
Superconductivity in BaPtSb with an Ordered Honeycomb Network
Creators: name: Kudo, Kazutaka
name: Saito, Yuki
name: Takeuchi, Takaaki
name: Ayukawa, Shin-ya
name: Kawamata, Takayuki
name: Nakamura, Shinichiro
name: Koike, Yoji
name: Nohara, Minoru
Publisher: name: arXiv
Year: 2018
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: Superconductivity in BaPtSb with the SrPtSb-type structure (space group $P\bar{6}m2$, $D_{3h}^1$, No. 187) is reported. The structure consists of a PtSb ordered honeycomb network that stacks along the $c$-axis so that spatial inversion symmetry is broken globally. Electrical resistivity and specific-heat measurements revealed that the compound exhibited superconductivity at 1.64 K. The noncentrosymmetric structure and the strong spin-orbit coupling of Pt and Sb make BaPtSb an attractive compound for studying the exotic superconductivity predicted for a honeycomb network.
description: 3 pages, 2 figures
title: Towards IR chemical imaging of tumor metastasis in organ on chip systems
Creators: name: Hondl, Nikolaus
name: Holub, Elisabeth
name: Lendl, Bernhard
name: Ramer, Georg
name: Lin, Kai-Lan
name: Parikainen, Marjaana
name: Soto Veliz, Diosangeles
name: Sahlgren, Cecilia
Publisher: name: TU Wien
Year: 2023
Subjects: IR
Cancer
Photothermal

description: Cancer, a worldwide health challenge and prominent cause of death, can be more effectively treated with early detection, thus driving the development of detection methods. Mid-IR has been used for label-free chemical imaging to detect cancerous tissues and cells [1,2], as an alternative to pathology approaches based on chemical staining. In collaboration with bio-medical researchers, we are using IR to study cancer cells, with the goal to distinguish between healthy, cancerous and metastasizing cells in tumor-on-a-chip systems. While FTIR excels in tissue sections [3], water-filled channels necessitate a mid-IR photothermal (MIP) approach. Our custom setup can image absorption through water, with the only adaptation being an IR transparent carrier. We report on our initial experiments using machine learning and IR spectroscopy for cell classification, comparing conventional FTIR microscopy to our MIP setup.
The Importance of Water and Sanitation in IDPs Case Study Kismayo,Somalia
Creators: name: Najmo, Abdikadir Bashir
Publisher: name: Zenodo
Year: 2025
Subjects: Importance of Water
Sanitation in IDPs Case Study Kismayo,Somalia

description: Abstract

The study was about the importance of water and sanitation among IDPs living in districtKismayo Jubbaland state of Somalia the specific to describe factors effecting water sanitationinIDPsinKismayodistrict.toidentifyimpotenceofwatersanitationandhygieneinKismayo district. to explain health education measures practicing health care providers inIDPs in Kismayo district. to develop plan increasing safety water sanitation in Kismayodistrict
Cercis siliquastrum subsp. siliquastrum Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Cercis
Cercis siliquastrum
Cercis siliquastrum l. subsp. siliquastrum

description: Cercis siliquastrum Linnaeus, Species Plantarum 1: 374. 1753.
"Habitat in Italia, Hispania, Narbona." RCN: 2945.
 Lectotype (Polhill in Jarvis & al. Regnum Veg. 127: 32. 1993): Löfling 275a , Herb. Linn. No. 524.1 (LINN).
 Generitype of Cercis Linnaeus (vide Hitchcock, Prop. Brit. Bot.: 152. 1929).
 Current name:  Cercis siliquastrum  L. subsp.  siliquastrum  (Fabaceae: Caesalpinioideae).
 Note: Although Isely (in Mem. New York Bot. Gard. 25(2): 211. 1975) indicated that he had seen the protologue and a fiche of material at LINN, he did not formally designate a type. Menéndez de Luarca (in Anales Jard. Bot. Madrid 55: 423. 1997) discusses a Clusius work as a source of information for this species.
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part C), pp. 370-473 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 405, DOI: 10.5281/zenodo.291971
Renewable energy potentials for the post-socialist urban environments of Ub (Serbia) – A shallow geothermal approach
Creators: name: Müller, Johannes
name: Jocic, Nikola
name: Pozar, Tea
name: Bertermann, David
Publisher: name: Zenodo
Year: 2019

description: Presentation from CATference (Cities After Transition Conference) 2019 in Belgrade, Serbia. Session - Renewable energy potentials in post-socialist cities & urban environments
Additional file 4: of Safety, activity, and molecular heterogeneity following neoadjuvant non-pegylated liposomal doxorubicin, paclitaxel, trastuzumab, and pertuzumab in HER2-positive breast cancer (Opti-HER HEART): an open-label, single-group, multicenter, phase 2 trial
Creators: name: Gavilá, Joaquín
name: Oliveira, Mafalda
name: Pascual, Tomás
name: Perez-Garcia, Jose
name: Gonzàlez, Xavier
name: Canes, Jordi
name: Paré, Laia
name: Calvo, Isabel
name: Ciruelos, Eva
name: Muñoz, Montserrat
name: Virizuela, Juan
name: Ruiz, Isabel
name: Andrés, Raquel
name: Perelló, Antonia
name: Martínez, Jerónimo
name: Serafín Morales
name: Marín-Aguilera, Mercedes
name: Martínez, Débora
name: Quero, Juan
name: Llombart-Cussac, Antonio
name: Aleix Prat
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Biotechnology
subject: Developmental Biology
subject: Cancer
subject: 60506 Virology
subject: FOS: Biological sciences
subject: Computational Biology

description: Figure S2. Intrinsic subtypes in surgical specimens. (PDF 130 kb)
$Λ$-ultrametric spaces and lattices of equivalence relations
Creators: name: Braunfeld, Samuel
Publisher: name: arXiv
Year: 2018
Subjects: subject: Rings and Algebras (math.RA)
subject: Logic (math.LO)
subject: FOS: Mathematics
subject: 03C50, 06B15, 18B35

description: For a finite lattice $Λ$, $Λ$-ultrametric spaces have, among other reasons, appeared as a means of constructing structures with lattices of equivalence relations embedding $Λ$. This makes use of an isomorphism of categories between $Λ$-ultrametric spaces and structures equipped with certain families of equivalence relations. We extend this isomorphism to the case of infinite lattices. We also pose questions about representing a given finite lattice as the lattice of $\emptyset$-definable equivalence relations of structures with model-theoretic symmetry properties.
description: 9 pages, Journal version
Additional file 7: of Comprehensive investigation of the gene expression system regulated by an Aspergillus oryzae transcription factor XlnR using integrated mining of gSELEX-Seq and microarray data
Creators: name: Oka, Hiroya
name: Kojima, Takaaki
name: Ihara, Kunio
name: Kobayashi, Tetsuo
name: Nakano, Hideo
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: Computational Biology

description: Table S4. Correlation analyses between various factors related to AoXlnR binding and differential expression levels. (DOC 49 kb)
Additional file 3: of Resveratrol attenuates oxidative injury in human umbilical vein endothelial cells through regulating mitochondrial fusion via TyrRS-PARP1 pathway
Creators: name: Yang, Jining
name: Zhou, Xi
name: Zeng, Xianglong
name: Hu, Ou
name: Yi, Long
name: Mi, Mantian
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Antibodies used in the western blot experiments. The detail information of the antibodies used in western blot experiments are listed in the table. (DOCX 17 kb)