cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Aspidepyris
Creators: name: Azevedo, Celso O.
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Bethylidae
Aspidepyris

description: Key to males of Aspidepyris
1 Elevation of pronotal disc high behind, overlying base of mesoscutum, posterior margin convex and distinct from posterior margin of disc (Fig. 4); base of paramere not constricted, cuspis as high as aedeagus (Fig. 5)...... A. foveolatus Evans, 1964
- Elevation of pronotal disc low behind, with posterior margin concave and somewhat fused to posterior margin of disc (Fig. 1); base of paramere strongly constricted, cuspis higher than aedeagus (Fig. 2)..................... A. austrinus Evans, 1967
description: Published as part of Azevedo, Celso O., 2011, Synopsis of Aspidepyris Evans, 1964 (Hymenoptera, Bethylidae), pp. 63-68 in Zootaxa 3016 on page 64, DOI: 10.5281/zenodo.207554
MOESM3 of Adhesion of Plasmodium falciparum infected erythrocytes in ex vivo perfused placental tissue: a novel model of placental malaria
Creators: name: Pehrson, Caroline
name: Mathiesen, Line
name: Heno, Kristine
name: Salanti, Ali
name: Resende, Mafalda
name: Dzikowski, Ron
name: Damm, Peter
name: Hansson, Stefan
name: King, Christopher
name: Schneider, Henning
name: Wang, Christian
name: Lavstsen, Thomas
name: Theander, Thor
name: Knudsen, Lisbeth
name: Nielsen, Morten
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 3. Maternal flow rate during ex vivo placental perfusion.
Additional file 1: of Comprehensive profiling of functional Epstein-Barr virus miRNA expression in human cell lines
Creators: name: Hooykaas, Marjolein
name: Kruse, Elisabeth
name: Wiertz, Emmanuel
name: Lebbink, Robert
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: 60506 Virology
subject: Computational Biology

description: List of miRNA sequences and perfect target sequences. List of miRNA sequences annotated in miRBase or (*) based on deep sequencing data from Chen et al. 2010 (column 2). Perfect target sequences (column 3) were cloned downstream of the mCherry reporter gene to monitor miRNA expression. # The deep-sequencing analysis in Fig.Â 3 identified a single nucleotide change (position 17, T changed to C) in the mature miR-BART19-5p miRNA sequence in the C666-1 strain. Therefore, the miR-BART19-5p miRNA sensor used in the C666-1 cells to monitor miRNA activity does not fully match the miR-BART19-5p sequence expressed in these cells (DOCX 20 kb)
CHVote: Sixteen Best Practices and Lessons Learned
Creators: name: Haenni, Rolf
name: Dubuis, Eric
name: Koenig, Reto
name: Locher, Philipp
Publisher: name: Springer
Year: 2020

description: The authors of this paper had the opportunity to closely accompany the CHVote project of the State of Geneva during more than two years and to continue the project after its abrupt stop in 2018. This paper is an experience report from this collaboration and the subsequent project continuation. It describes the lessons learned from this project and proposes some best practices relative to sixteen different topics. The goal of the paper is to share this experience with the community.
Additional file 1: of Perfusion Pressure Cerebral Infarct (PPCI) trial - the importance of mean arterial pressure during cardiopulmonary bypass to prevent cerebral complications after cardiac surgery: study protocol for a randomised controlled trial
Creators: name: Vedel, Anne
name: Holmgaard, Frederik
name: Rasmussen, Lars
name: Paulson, Olaf
name: Thomsen, Carsten
name: Danielsen, Else
name: Langkilde, Annika
name: Goetze, Jens
name: Lange, Theis
name: Ravn, Hanne
name: Nilsson, Jens
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Marine Biology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: SPIRIT checklist â   recommended items to address in a clinical trial protocol. (DOC 122 kb)
Monazite analysis; from sample preparation to microprobe age dating and REE quantification
Creators: name: Scherrer, Nadim
name: Engi, Martin
name: Gnos, Edwin
name: Jakob, Vreni
name: Liechti, Adrian
Year: 2000
Subjects: EMPA REE monazite polishing sample preparation chemical dating Th-U-Pb dating u-pb systematics electron-microprobe amphibolite-facies accessory minerals th xenotime geochronology metapelites chemistry behavior

description: Despite the recognized importance of monazite in geochronology and petrology, a range of fundamental analytical and preparational problems remains. For example, chemical Th-U-Pb dating of monazite requires special lead-free sample preparation. This is achieved efficiently and at high quality with specially developed grooved ND-PE polyethylene polishing disks. Techniques useful in locating and characterizing monazite are evaluated. Back scattered electron imaging is an effective way to determine zonation patterns, particularly with respect to thorium. Quantitative analysis of monazite by EMP is delicate and time consuming. A whole series of X-ray peak interferences has been ignored in published work. For example, for monazite containing 12% Th, the commonly disregarded interference of Th hit on Pb hla causes an overestimation of 11% (relative) in Pb. This propagates to an age overestimation of similar to 50 Ma for a sample of 400 to 500 Ma in age. A judicious choice of X-ray peaks used in quantitative EMP analysis avoids or minimises peak overlap for all elements, including REE. Only for U a correction factor is required: U wt%(corrected) = U wt%(measured) - (0.0052 * T wt%(measured)) based on the analytical lines U Mb and Th Ma.
MOESM1 of Spatial heterogeneity can undermine the effectiveness of country-wide test and treat policy for malaria: a case study from Burkina Faso
Creators: name: Valle, Denis
name: Millar, Justin
name: Punam Amratia
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 1. Description of statistical models.
The participant’s perspective : learning from an aggression management training course for nurses : Insights from a qualitative interview study.
Creators: name: Heckemann, Birgit
name: Breimeier, Helga Elisabeth
name: Halfens, Ruud J.G.
name: Schols, Jos M.G.A.
name: Hahn, Sabine
Publisher: name: Wiley-Blackwell - STM
Year: 2016

description: Background Aggression management training for nurses is an important part of a comprehensive strategy to reduce patient and visitor aggression in healthcare. Although training is commonplace, few scientific studies examine its benefits. Aim To explore and describe, from a nurse's perspective, the learning gained from attending aggression management training. Design and methods This was a descriptive qualitative interview study. We conducted semi‐structured individual interviews with seven nurses before (September/October 2012) and after they attended aggression management training (January/February 2013). Interview transcripts were content‐analysed qualitatively. Ethical issues The study plan was reviewed by the responsible ethics committees. Participants gave written informed consent. Findings Aggression management training did not change nurses’ attitude. Coping emotionally with the management of patient and visitor aggression remained a challenge. Nurses’ theoretical knowledge increased, but they did not necessarily acquire new strategies for managing patient/visitor aggression. Instead, the course refreshed or activated existing knowledge of prevention, intervention and de‐escalation strategies. The training increased nurses' environmental and situational awareness for early signs of patient and visitor. They also acquired some strategies for emotional self‐management. Nurses became more confident in dealing with (potentially) aggressive situations. While the training influenced nurses’ individual clinical practice, learning was rarely shared within teams. Conclusions Aggression management training increases skills, knowledge and confidence in dealing with patient or visitor aggression, but the emotional management remains a challenge. Future research should investigate how aggression management training courses can strengthen nurses’ ability to emotionally cope with patient and visitor aggression. More knowledge is needed on how the theoretical and practical knowledge gained from the training may be disseminated more effectively within teams and thus contributed to the creation of low‐conflict ward cultures.
title: Machine learning for chemical data
Creators: name: Aribowo, Beryl Ramadhian
Year: 2024

description: Die wichtigste chemische Eigenschaft von Molekülen ist die Energie im Gleichgewicht und in ihren molekularen Konfigurationen. Diese Arbeit befasst sich mit der Vorhersage dieser Energien aus gegebenen Daten unter Verwendung statistischer und maschineller Lernansätze. Der erste Teil der Arbeit befasst sich mit der Konstruktion hochgenauer potenzieller Energieoberflächen von zweiatomigen Molekülen unter Verwendung traditioneller funktionaler Ansätze. Der zweite Teil befasst sich mit komplexeren potenziellen Energiefunktionen für kleine Moleküle HxOy und deren Training mit automatischer Differenzierung im umgekehrten Modus, die im Vergleich zu finiten Differenzen oder symbolischer Differenzierung eine bessere Effizienz bietet. Darüber hinaus wird eine neuartige halbüberwachte Lerntechnik auf der Grundlage der Shepard-Interpolation vorgestellt, die für das Training chemischer Daten mit minimalen Informationen über das Ziel nützlich ist. Der dritte Teil des Arbeit behandelt die QM9-Herausforderung, das Problem der Vorhersage aller 130K Gleichgewichts-Energien des QM9-Datensatzes mit chemischer Genauigkeit aus den Gleichgewichts-Energien für eine winzige Menge (weniger als 1%) von Trainingsgeometrien. Durch die Kombination von maschinellem Delta-Lernen, Hyperparameter-Abstimmung und Datenauswahltechniken, die kombinatorische Optimierung beinhalten, wird mit 100 Trainingsgeometrien eine Genauigkeit von 3.25 kcal/mol erreicht. Mit den gefundenen Parametern und eine weniger aufwendigen Datenauswahlstrategie wurde chemische Genauigkeit (1 kcal/mol) mit 3750 Trainingsgeometrien erreicht.
description: The most important chemical property of molecules is the equilibrium energy and that of their molecular configurations. This thesis deals with the prediction of these energies from given data using statistical and machine learning approaches. The first part of the thesis deals with the construction of highly accurate potential energy surfaces for diatomic molecules using traditional functional approaches. The second part deals with more complex potential energy functions for small molecules HxOy and their training with reverse mode automatic differentiation, which offers better efficiency compared to finite differences or symbolic differentiation. In addition, a novel semi-supervised learning technique based on Shepard interpolation is presented, which is useful for training chemical data with minimal information on the target. The third part of the thesis discusses the QM9 challenge, the problem of predicting all 130K equilibrium energies of the QM9 dataset with chemical accuracy from the equilibrium energies for a tiny amount (less than 1%) of training geometries. By combining delta machine learning, hyperparameter tuning, and data selection techniques involving combinatorial optimization, an accuracy of 3.25 kcal/mol) is achieved with 100 training geometries. Using the training parameters found and a less expensive data selection strategy, chemical accuracy (1 kcal/mol) was achieved with 3750 training geometries.
Additional file 5: Figure S3. of Improvement in detection of minor alleles in next generation sequencing by base quality recalibration
Creators: name: Shengyu Ni
name: Stoneking, Mark
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology

description: The frequency distribution of GATK (with dbsnp142 as the control) recalibrated base quality. Black: sequence error; Red: SNPs in dbsnp 142; Blue: SNPs not found in dbsnp 142. (PDF 4Â kb)
Photovoltaik-Potenziale der Schweiz
Creators: name: Bucher, Christof
Year: 2022

description: Photovoltaik (PV) ist die einzige Technologie zur Stromerzeugung, die in der Schweiz rasch und in grossen Mengen neu gebaut werden kann. PV-Anlagen sind praktisch überall sinnvoll, wo die Sonne scheint. Ob eine PV-Anlage gross oder klein ist, hat keinen Einfluss auf ihren Wirkungsgrad und nur einen untergeordneten auf die Stromgestehungskosten. Trotzdem gibt es grosse Unterschiede zwischen den möglichen Anlagentypen. In diesem Dokument werden die wichtigsten miteinander verglichen.
Aspidepyris foveolatus Evans 1964
Creators: name: Azevedo, Celso O.
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Bethylidae
Aspidepyris
Aspidepyris foveolatus

description: Aspidepyris foveolatus Evans, 1964
(Figs 4, 5)
Aspidepyris foveolatus Evans, 1964: 115 –116 (male description, figs 79–81), Gordh & Móczár, 1990: 69 (catalog).
Diagnosis. MALE. Length 4.1 mm. Body (Fig. 4). Color: head and mesosoma black, metasoma dark castaneous; mandible, antenna and legs castaneous to dark castaneous; forewing weakly infuscated. Mandible with three wide apical teeth, upper truncate, median rounded, lower sharpened. Clypeus with subangulate median lobe, median carina complete. Antenna thick, segment III as thick as long. Frons weakly coriaceous, punctures small. WH 1.03 × LH, WF 0.55 × WH, WF 1.06 × HE, OOL 1.1 × WOT, distance posterior ocellus from vertex crest 0.57 × DAO. Head wide behind eye. Vertex convex, corner rounded. VOL 0.44 × HE. Elevation of pronotal disc high posteriorly, with posterior margin convex and distinct from posterior margin of disc. Notaulus wide, distance between notauli 1.0 × their width. Parapsidal furrows straight, incomplete posteriorly and touching anterior margin of mesoscutum, about equally distant from lateral margin of mesoscutum as from notauli. Scutellar pits elliptical, touching lateral margin of scutellum. Propodeal disc with paramedian carina angled laterad posteriorly. Genitalia (Fig. 5): paramere with apex wide and truncate, cuspis apex aligned with aedeagus apex, digitus higher than cuspis, aedeagus only 0.53 × as long as complete genitalia, apex aligned with cuspis apex, not constricted medially. FEMALE unknown.
Material examined. Holotype 3: HONDURAS, Atlantida, La Ceiba, 18.X.1916, F.J. Dyer col. (AMNH). Distribution. Honduras. This species is known from the type locality only.
description: Published as part of Azevedo, Celso O., 2011, Synopsis of Aspidepyris Evans, 1964 (Hymenoptera, Bethylidae), pp. 63-68 in Zootaxa 3016 on pages 66-67, DOI: 10.5281/zenodo.207554
Additional file 5: of Flexible characterization of animal movement pattern using net squared displacement and a latent state model
Creators: name: Bastille-Rousseau, Guillaume
name: Potts, Jonathan
name: Yackulic, Charles
name: Frair, Jacqueline
name: E. Ellington
name: Blake, Stephen
Publisher: name: Figshare
Year: 2016
Subjects: subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology

description: Influence of starting date. (DOCX 446 kb)
Additional file 1: Figure S9. of Improvement in detection of minor alleles in next generation sequencing by base quality recalibration
Creators: name: Shengyu Ni
name: Stoneking, Mark
Publisher: name: Figshare
Year: 2016
Subjects: subject: Pharmacology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: The distribution of the number of bases in each bin, which is defined as per phred score (typically ranging from 2 to 41) per group. Left, frequency distribution of the number of bases per bin. Right, the number of omitted bins (with <100 bases) plotted against base quality score, showing that bins are mostly omitted for very low or very high base quality scores. (PDF 13Â kb)
Biological Control of the Raspberry Eriophyoid Mite Phyllocoptes gracilis Using Entomopathogenic Fungi
Creators: name: Christ, Bastien
name: Minguely, Camille Olivia
name: Norgrove, Lindsey
name: Burren, Alexander
Publisher: name: MDPI
Year: 2021

description: There is an urgent need to develop biological control methods against the eriophyoid mite, Phyllocoptes gracilis, which causes significant losses in organic raspberry production in Europe. The use of entomopathogenic fungi (EF) is a sustainable alternative to conventional chemical pesticides, reducing the risks of pesticide resistance and other negative environmental impacts of agriculture. The objective of this study was to assess the pathogenicity of three strains of EF, two of Beauveria bassiana and one of Metarhizium anisopliae, on P. gracilis under laboratory conditions. Fungal spore suspensions (1 × 107 spores per mL) were sprayed on detached leaves infested with P. gracilis. Treated mites were kept under controlled conditions (25 ± 3 °C, 72 ± 10% relative humidity and photoperiod of 16:8 (light/dark)) and mite mortality was assessed three, five and seven days after inoculation. At all three measurement points (days after inoculation), the mortality of P. gracilis was highest for B. bassiana strain BB 1.1 and M. anisopliae strain MA 10.1. Our data demonstrate that EFs are promising candidates for the development of biological control agents against P. gracilis in raspberry crops.
Additional file 9: Figure S8. of Potential for evolution of complex defense strategies in a multi-scale model of virus-host coevolution
Creators: name: Jeewoen Shin
name: MacCarthy, Thomas
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: The effect of having a complex gene regulatory network (GRN) for controlling receptor gene expression. a) Preference for resistance using GRN rewiring to protein mutations decreases when there are no regulatory interactions between genes (without regulatory interactions in the gene network) (N ER /N R  = 3/5, ϵ seqM  = 90 %, k I  = 0.8). b) The ability to switch the expression of multiple receptors with a complex GRN. The probability of multiple receptor gene expression switching (see Methods) increases during host-virus coevolution (L = 30, μ hp  = 0.01 and 0.002, ϵ seqM  = 90 %, k I  = 0.8). (PDF 245 kb)
The public perception of doping in sport in Switzerland, 1995-2004
Creators: name: Stamm, Hanspeter
name: Lamprecht, Markus
name: Kamber, Matthias
name: Marti, Bernard
name: Mahler, Nadja
Publisher: name: Taylor & Francis
Year: 2008
Subjects: Doping Public perception Anti-doping strategy Switzerland

description: The article reports findings on the perception of doping and anti-doping policies from four representative population surveys carried out in 1995, 1998, 2001, and 2004, as well as from a 2005 - 2006 survey of top-level athletes in Switzerland. The results show a growing public awareness for doping issues and increasing support for a comprehensive anti-doping strategy in Switzerland. The vast majority of the Swiss population and top-level athletes are strongly against doping and support a strategy that combines strict prohibition and sanctioning with informational and educational efforts. The perception of the doping issue and the strategic preferences in fighting doping stated by the public are largely in line with the current anti-doping strategy followed by the Swiss authorities. The results thus suggest a successful use of information resources by the authorities to create public awareness and to communicate its strategy.
Phyletis (Scopula) dubernardi Oberthur 1923
Creators: name: Pasi Sihvonen
Publisher: name: Zenodo
Year: 2005
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Geometridae
Phyletis
Phyletis dubernardi

description: Phyletis (Scopula) dubernardi Oberthür, 1923
(Figs. 5–8, 12–14, 18). Syntype: male, labeled: ”Tsekou / P. Dubernard / 1898; Scopula / dubernardi / Type Obth. / Dr. Wehrli; Phyletis / Dubernardi / Obthr.; Sammlung / Dr. Eugen Wehrli / Eing. Nr. 17, 1955; [additional label: cut illustration of Phyletis dubernardi, fig. 4828, taken from original publication (Oberthür, 1923)]” (in Coll. ZFMK).
description: Published as part of Pasi Sihvonen, 2005, Scopula anfractata sp. n., a new geometrid moth from Yunnan, China (Lepidoptera: Geometridae, Sterrhinae), pp. 1-8 in Zootaxa 943 on page 7, DOI: 10.5281/zenodo.171175
Additional file 1: of Research for Policy (R4P): development of a reflection tool for researchers to improve knowledge utilization
Creators: name: Hegger, Ingrid
name: Marks, Lisanne
name: Janssen, Susan
name: Schuit, Albertine
name: Keijsers, Jolanda
name: Oers, Hans Van
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Science Policy

description: Topic list. (DOC 28 kb)
Registration Data Access Protocol (RDAP) for digital forensic investigators
Creators: name: Nikkel, Bruce
Publisher: name: Elsevier
Year: 2017

description: This paper describes the Registration Data Access Protocol (RDAP) with a focus on relevance to digital forensic investigators. RDAP was developed as the successor to the aging WHOIS system and is intended to eventually replace WHOIS as the authoritative source for registration information on IP addresses, Domain Names, Autonomous Systems, and more. RDAP uses a RESTful interface over HTTP and introduces a number of new features related to security, internationalization, and standardized query/response definitions. It is important for digital forensic investigators to become familiar with RDAP as it will play an increasingly important role in Internet investigations requiring the search and collection of registration data as evidence.
Aspilates (Loxaspilates) obliquaria Moore 1868
Creators: name: Pasi Sihvonen
Publisher: name: Zenodo
Year: 2005
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Geometridae
Aspilates
Aspilates obliquaria

description: Aspilates (Loxaspilates) obliquaria Moore, 1868
. Type: female, labeled: ”N.E. Bengal / Russell [on the other side:] aspilates / obliquaria / type Moore; Moore coll. / 94­106.; Type [round label with red margin]; Geometridae / genitalia slide / No. 21639” (in Coll. BMNH) .
description: Published as part of Pasi Sihvonen, 2005, Scopula anfractata sp. n., a new geometrid moth from Yunnan, China (Lepidoptera: Geometridae, Sterrhinae), pp. 1-8 in Zootaxa 943 on page 7, DOI: 10.5281/zenodo.171175
Additional file 2: Figure S6. of Improvement in detection of minor alleles in next generation sequencing by base quality recalibration
Creators: name: Shengyu Ni
name: Stoneking, Mark
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology

description: Recalibrated base quality scores for simulated data analyzed with different methods, compared to the empirical score. The ideal (diagonal) line is shown in each plot. The Frequency-Weighted Squared Error (FWSE) is given for each method. Raw: Illumina default sequencer; GATK: Mapping to the consensus sequence and the known minor alleles (MAF > 5 %) are used as the known SNPs. Seg: this study; Seg_half: the same as Seg but with half of the reads chosen randomly for the training set. (PDF 6 kb)
Additional file 8: Figure S7. of Potential for evolution of complex defense strategies in a multi-scale model of virus-host coevolution
Creators: name: Jeewoen Shin
name: MacCarthy, Thomas
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Increased genetic diversity in the gene regulatory networks, phenotypes and receptor proteins. Genetic diversity is measured using the Margalef index (see the last section in Results). a) whole GRNs (blue), transcription factor regulation sub-networks (red), receptor regulation sub-networks (green) of susceptible hosts. b) Phenotypes (gene expression levels) of susceptible populations. c) Receptor sequence of susceptible populations. (PDF 461Â kb)
Additional file 1: of Creating visual explanations improves learning
Creators: name: Bobek, Eliza
name: Tversky, Barbara
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: Post-tests. (DOC 44 kb)
Loxaspilates arrizanaria Bastelberger 1909
Creators: name: Pasi Sihvonen
Publisher: name: Zenodo
Year: 2005
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Geometridae
Loxaspilates
Loxaspilates arrizanaria

description: Loxaspilates arrizanaria Bastelberger, 1909
. Lectotype: male, labeled: ” Lectotypus [red rectangle label]; Arrizan. (Kagi) / FORMOSA. / 7­10000 Fuss.; Lep. 278 / b; Coll. / Bastelberger” (studied externally only) (in Coll. SMF) .
description: Published as part of Pasi Sihvonen, 2005, Scopula anfractata sp. n., a new geometrid moth from Yunnan, China (Lepidoptera: Geometridae, Sterrhinae), pp. 1-8 in Zootaxa 943 on page 7, DOI: 10.5281/zenodo.171175
Additional file 8: Figure S10. of Improvement in detection of minor alleles in next generation sequencing by base quality recalibration
Creators: name: Shengyu Ni
name: Stoneking, Mark
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Marine Biology

description: A comparison of segmented vs. quadratic regression applied to base score recalibration for phiX174 data. Quadratic regression does not result in an overall improvement. (PDF 5Â kb)
Paradelius , de Saeger 1942
Creators: name: Ranjith, A. P.
name: Butcher, Buntika A.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Braconidae
Paradelius

description: Paradelius de Saeger, 1942
Paradelius, de Saeger 1942: 313.
Type species: Paradelius ghesquierei de Saeger, 1942 (original designation).
Diagnosis. Antenna of female slender submedially, with 20–22 antennomeres (Figs 1A, 3A); maxillary palp with 3–5 palpomeres (3 in type species); clypeus almost as wide as face (Figs 1B, 3B); eyes setose (Figs 1B, 3B); prepectal carina present (Figs 1D, 3D); sternaulus mostly impressed (Figs 1D, 3D), rarely indistinct; dorsal areola of propodeum wide mostly without medial transverse carina (Fig. 1F), rarely with indistinct transverse carina (Fig. 3F); vein 1-SR of fore wing absent (Figs 2C, 4C); first and second metasomal tergites largely longitudinally sculptured (Figs 2B, 4B), rarely second tergite smooth; first and second metasomal sutures distinct and crenulate (second metasomal suture indistinct in P. ussuriensis) (Figs 2B, 4B).
Distribution. Afrotropical, East Palaearctic and Oriental regions.
Biology. Unknown.
description: Published as part of Ranjith, A. P. & Butcher, Buntika A., 2024, First record of the adeliine genus Paradelius de Saeger, 1942 (Hymenoptera: Braconidae) from India with the description of two new species, pp. 573-580 in Zootaxa 5463 (4) on page 574, DOI: 10.11646/zootaxa.5463.4.7, http://zenodo.org/record/11612531
Handgrip Strength Values Depend on Tumor Entity and Predict 180-Day Mortality in Malnourished Cancer Patients
Creators: name: Tribolet, Pascal
name: Kaegi-Braun, Nina
name: Gressies, Carla
name: Baumgartner, Annic
name: Wagner, Karl-Heinz
name: Stanga, Zeno
name: Schuetz, Philipp
Publisher: name: MDPI
Year: 2022
Subjects: handgrip strength
malnutrition
cancer
nutritional support
clinical outcomes

description: Background: Cancer-related malnutrition is a prevalent condition associated with a loss of muscle mass and impaired functional status, leading to immunodeficiency, impaired quality of life and adverse clinical outcomes. Handgrip strength (HGS) is a practical measure to assess muscle strength in individual patients during clinical practice. However, HGS reference values refer to populations of healthy people, and population-specific values, such as those in the population of cancer patients, still need to be defined. Methods: Within a secondary analysis of a previous randomized controlled nutritional trial focusing on hospitalized cancer patients at risk for malnutrition, we investigated sex-specific HGS values stratified by age and tumor entity. Additionally, we examined the association between HGS and 180-day all-cause mortality. Results: We included data from 628 cancer patients, which were collected from eight hospitals in Switzerland. Depending on the age of patients, HGS varied among female patients from 7 kg to 26 kg and among male patients from 20.5 kg to 44 kg. An incremental decrease in handgrip strength by 10 kg resulted in a 50% increase in 180-day all-cause mortality (odds ratio 1.52 (95%CI 1.19 to 1.94), p = 0.001). Conclusion: Our data provide evidence of the prognostic implications of HGS measurement in cancer patients and validate the prognostic value of handgrip strength in regard to long-term mortality. In addition, our results provide expected HGS values in the population of hospitalized malnourished cancer patients, which may allow better interpretation of values in individual patients.
Additional file 3: of Research for Policy (R4P): development of a reflection tool for researchers to improve knowledge utilization
Creators: name: Hegger, Ingrid
name: Marks, Lisanne
name: Janssen, Susan
name: Schuit, Albertine
name: Keijsers, Jolanda
name: Oers, Hans Van
Publisher: name: Figshare
Year: 2016
Subjects: subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy

description: Final R4P tool. (PDF 358 kb)
Preface: The Everyday Politics of Public Space
Creators: name: De Backer, Mattias
name: Dijkema, Claske
name: Hörschelmann, Kathrin
Publisher: name: SAGE
Year: 2019
Subjects: Public space Everyday politics Minor theory Power and place Prefigurative politics

description: While in the past two decades a rich literature has emerged about the politics of public space, many of these theoretical works and empirical studies consider public space interactions and behaviors against the backdrop of deliberative or representative politics. In this special issue, to which this article is the preface, we offer some reflections on how the everyday and the micro-level can be sites of political expression, leading inevitably to a critical discussion of the central assumptions regarding private/public space and its generational, gendered, classed, and “culturalized” construction. This analysis takes place with three theoretical axes in the background: Katz’s minor theory, anarchist theory on prefigurative politics, and Foucault, de Certeau, and Lefebvre’s work on power, knowledge, and place.
Additional file 4: Figure S3. of Potential for evolution of complex defense strategies in a multi-scale model of virus-host coevolution
Creators: name: Jeewoen Shin
name: MacCarthy, Thomas
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: The number of contacts between host and parasite populations for different offspring survival rate from infected parents. The number of contacts between host and parasite populations decreases when offspring survival rate from infected parents (k I ) is low (Error bar: one std. dev. over 100 simulations). (PDF 49Â kb)
Untersuchung zur Wirkung von Kinesio-Tape® und IQ-Tape® auf die Neuromuskuläre Aktivität beim Joggen, Treppensteigen und Drop-Jump
Creators: name: Rogan, Slavko
name: Baur, Heiner
Publisher: name: Georg Thieme Verlag
Year: 2020

description: Background: Positive effects are postulated after Kinesiotape application for the treatment of sports injuries. Attributes such as metabolism stimulation, decongesting, invigorating and analgesic are called. The aim of this intervention study with a within-subject-design was to examine the effects of different elastic tapes (Kinesiotape® - KT, IQ-Tape® - IQ, without tape: OT) on the neuromuscular activation of the flexor and extension chain of the lower extremity during jogging, climbing stairs and drop jumps. Subjects/Methods: Eighteen healthy adults (5 males and 13 females) with mean age of 26.29 ± 3.57 years and of 22.3 ± 0.7kg/m2 were recruited. The participants performed stairs climbing down, drop jumping and running with 10km/h, 12 km/h and 15 km/h. Muscle activation of the vastus medialis and laterails and bipceps femoris and semitendinosus muscles, tibialis anterior muscle, gastrocnemius medialis and lateralis muscle were assessed to represent the ratio of muscle activation of the anterior tibial muscle and gastrocnemius medialis and lateralis muscles (T/G ratio) and the ratio of muscle activation of the vastus medialis and lateralis muscles and biceps femoris and semitendinosus muscles (Q/I ratio) at the time before (-150 - 0 ms pre), during (0-30 ms post) and from 30 ms to 150 ms after the first ground contact by means of electromyographic measurements. The statistical analysis was carried out by means of the nonparametric L Puri Sen method. The significance level was set to p <0.05. Results: Two participants withdrew from the study. The raw data of 16 participants could be analysed. During stairs climbing down, IQT shows a significantly better T/G ratio in the pre activation phase (-150 to 0 ms) compared to no tape (p = 0.01). The remaining applications with KT, IQT and no tape showed no significant differences (p <0.05) Conclusion: It can be assumed that Kinesiotape® - KT und IQ-Tape®- IQ do not cause any relevant detectable changes in muscle activation in healthy individuals. Future studies should include patients with pathologically altered neuromuscular control.
Paradelius , de Saeger 1942
Creators: name: Ranjith, A. P.
name: Butcher, Buntika A.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Braconidae
Paradelius

description: Key to the species of Paradelius de Saeger, 1942
1. Antenna with 22 antennomeres (Figs 1A, 3A)............................................................... 2
– Antenna with 20 antennomeres.......................................................................... 3
2. Metasomal tergites yellow (Fig. 2B); metapleuron smooth (Fig. 1D); propodeal areola smooth without medial transverse carina (Fig. 1F).................................................................. Paradelius flavus Ranjith sp. nov.
– Metasomal tergites brown (Fig. 4B); metapleuron striate (Fig. 3D); propodeal areola sculptured with indistinct medial transverse carina (Fig. 3F)........................................................... Paradelius striatus Ranjith sp. nov.
3. Second metasomal suture indistinct; sternaulus not distinctly impressed; second metasomal tergite smooth................................................................................ Paradelius ussuriensis Belokobylskij, 1988
– Second metasomal suture distinct; sternaulus distinctly impressed; second metasomal tergite longitudinally striate........ 4
4. Second metasomal tergite smooth posteriorly; propodeal areola with indistinct medial transverse carina; hind wing vein cu-a not sclerotized......................................................... Paradelius ghesquierei de Saeger, 1942
– Second metasomal tergite longitudinally striate completely; propodeal areola without indistinct medial transverse carina; hind wing vein cu-a sclerotized................................................ Paradelius chinensis He & Chen, 2000
description: Published as part of Ranjith, A. P. & Butcher, Buntika A., 2024, First record of the adeliine genus Paradelius de Saeger, 1942 (Hymenoptera: Braconidae) from India with the description of two new species, pp. 573-580 in Zootaxa 5463 (4) on page 574, DOI: 10.11646/zootaxa.5463.4.7, http://zenodo.org/record/11612531
Additional file 6: Figure S4. of Improvement in detection of minor alleles in next generation sequencing by base quality recalibration
Creators: name: Shengyu Ni
name: Stoneking, Mark
Publisher: name: Figshare
Year: 2016
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology

description: The maximum LLR from sequence error in simulated data under different sequence depths. For the raw data increasing sequence dept results in increased LLR from sequence errors, whereas after SEGREG base recalibration, increasing the sequence depth results in lower LLR. (PDF 11Â kb)
Additional file 2: of Research for Policy (R4P): development of a reflection tool for researchers to improve knowledge utilization
Creators: name: Hegger, Ingrid
name: Marks, Lisanne
name: Janssen, Susan
name: Schuit, Albertine
name: Keijsers, Jolanda
name: Oers, Hans Van
Publisher: name: Figshare
Year: 2016
Subjects: subject: Molecular Biology
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy

description: Draft R4P tool. (DOCX 30 kb)
Die Lebenswelt von Bewohner*innen in Seniorenheimen
Creators: name: Röösli, Rahel
name: Soom Ammann, Eva
Year: 2021

description: Fachkräftemangel und Zeitdruck im Pflegealltag zwingen dazu, pflegerische Tätigkeiten zu rationieren. Dabei kommen die Bedürfnisse von Heimbewohner*innen sowie die Achtung ihrer Lebenswelt häufig zu kurz, und sie werden in ihrer Selbständigkeit wenig unterstützt. Sechs qualitativ-narrative Interviews mit Bewohner*innen aus zwei Seniorenheimen wurden in Anlehnung an die interpretative phänomenologische Analyse aus-gewertet. Die Analyse zeigt, dass Bewohner*innen im Seniorenheim meist eine grosse Veränderung ihrer vorab gewohnten Lebenswelt erleben. Bewohner*innen sind in ihren heimspezifischen Lebenswelten vermehrt auf die Hilfe der Pflegenden angewiesen und somit stärker von den Strukturen des Heims abhängig, der Heimalltag bestimmt ihre Lebenswelten bis zu einem gewissen Grad. Die Möglichkeit, den Alltag und die Lebenswelt selbst zu gestalten und die Unabhängigkeit von der Pflege sind den Bewohner*innen jedoch sehr wichtig. Deshalb ist es für sie zentral, ihre Selbständigkeit zu er-halten. Bewohner*innen sind bestrebt, eine Kontinuität der für sie gewohnten Aktivitäten und täglichen Routinen zu wahren und ihre Lebenswelt entsprechend ihrer Vorlie-ben zu gestalten. Dies hilft ihnen, sich in den Strukturen des Heimes aufgehoben und sicher zu fühlen und eine Vorhersehbarkeit im Alltag zu erleben.
Additional file 1: Table S1. of Myeloproliferative neoplasms (MPNs) have a significant impact on patientsâ   overall health and productivity: the MPN Landmark survey
Creators: name: Mesa, Ruben
name: Miller, Carole
name: Thyne, Maureen
name: Mangan, James
name: Goldberger, Sara
name: Fazal, Salman
name: Xiaomei Ma
name: Wilson, Wendy
name: Paranagama, Dilan
name: Dubinski, David
name: Boyle, John
name: Mascarenhas, John
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer

description: Prognostic Risk Scoring Systems. Figure S1. Proportion of Respondents Who Reported Individual Symptoms to be Very Severe. (PDF 399Â kb)
Ready-meal consumption: associations with weight status and cooking skills
Creators: name: Van Der Horst, Klazine
name: Brunner, Thomas
name: Siegrist, Michael
Publisher: name: Cambridge University Press
Year: 2011
Subjects: Ready meals
Overweight
Cooking skill

description: Objective:The ready-meal market has grown considerably in recent years. Atthe same time, a degradation of traditional cooking skills has been observed.Ready meals are often rich in energy, fat and sugar and lack vegetables; however,studies investigating associations between ready-meal consumption, overweightand cooking skills are lacking. The present study examines whether demographicfactors, overweight, beliefs about the nutritional value and taste of ready mealsand cooking skills are associated with ready-meal consumption.Design:Cross-sectional survey.Setting:Ready-meal consumption, weight status, cooking skills, beliefs aboutthe taste and nutritional value of ready meals and demographic variables wereassessed with self-administered questionnaires. Data were analysed with one-wayANOVA and multiple regression analysis.Subjects:A total of 1017 adults from the German-speaking part of Switzerland.Results:Men reported being more positive about ready meals and havingfewer cooking skills compared with women. Overweight adults (BMI.25 kg/m2)were more positive about nutrients and vitamins in ready meals compared withnormal-weight adults. Ready-meal consumption was associated with cooking skills(b520?192), age (b520?228), overweight (b50?129), nutritional value (b520?131), taste (b520?126), working status (b50?096) and gender (b50?084).Conclusions:Cooking skills were identified as a strong predictor of ready-mealconsumption. The importance of cooking skills as a barrier to healthy eatingshould be explored, as it is plausible that cooking skills will further decrease in thefuture. Next, the study provided evidence for an association between ready-mealconsumption and overweight. Further research should examine the importance ofready meals for the overweight epidemic.
"Wir müssen Bias aus Sprachmodellen entfernen": eine Podcastfolge über KI in Verwaltung und Justiz
Creators: name: Stoltze-Siebmann, Anne-Careen
Publisher: name: Berner Fachhochschule, Wirtschaft
Year: 2023

description: Chat GPT ist gerade in aller Munde. Das trainierte Programm kann eigentlich über jedes Thema plaudern und Gespräche führen, die menschlich anmuten. Aber ChatGPT unterlaufen auch Fehler. In der neuesten Episode des Podcasts «Let’s Talk Business» reden KI-Expertin Mascha Kurpicz-Briki und Datenforscher Matthias Stürmer darüber, wie man Bias vermeiden kann, warum der Begriff Augmented Intelligence besser passt als KI und wie sie in Justiz und Verwaltung eingesetzt werden kann. Hier geht es zur Episode und zu einer gekürzten schriftlichen Version. Heute sprechen wir über ein Thema, das seit Anfang des Jahres für Furore sorgt. ChatGPT. Das trainierte Sprachmodell kann über jedes Thema plaudern und Gespräche führen, die ziemlich menschlich anmuten. Aber ChatGPT unterlaufen auch sachliche Fehler und ein weiteres Problem sind Bias, also Vorurteile. Du hast in einem Forschungsprojekt untersucht, das Künstliche Intelligenz diskriminiert. Wie zeigt sich das?
Erfolgreiche Kooperation
Creators: name: Zürcher-Florin, Sabin
name: Hahn, Sabine
Publisher: name: Schweizer Berufsverband der Pflegefachfrauen und Pflegefachmänner
Year: 2018

description: Seit elf Jahren arbeiten das Departement Gesundheit der Berner Fachhochschule und der Bereich Fachentwicklung Pflege der Lindenhofgruppe Bern eng zusammen. Initiativ gehen sie Themen an, die unter den Nägeln brennen, aber häufig vernachlässigt werden.