cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Otolemur garnettii subsp. panganiensis
Creators: name: Turni, Hendrik
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Primates
Galagidae
Otolemur
Otolemur garnettii
Otolemur garnettii panganiensis (matschie, 1905)

description: Otolemur panganiensis Matschie, 1905
Sitzungsberichte der Gesellschaft Naturforschender Freunde zu Berlin, p. 278
Current valid name: Otolemur garnettii panganiensis (Matschie, 1905)
Holotype: ZMB 3402, female, skull and skin; Aruscha [Arusha], Kilimanjaro, Tanzania; collected by von der Decken, 4 October 1862.
description: Published as part of Turni, Hendrik, 2024, Type specimens of Primates (Mammalia) in the collections of the Museum für Naturkunde Berlin, pp. 151-194 in Zootaxa 5543 (2) on page 156, DOI: 10.11646/zootaxa.5543.2.1, http://zenodo.org/record/14385859
Additional file 1: of Sepsis recognition in the emergency department – impact on quality of care and outcome?
Creators: name: Morr, Marius
name: Lukasz, Alexander
name: Rübig, Eva
name: Pavenstädt, Hermann
name: Kümpers, Philipp
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Marine Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Baseline characteristics of all included patients (table). (PDF 169 kb)
Aeromicrobium marinum Bruns et al. 2003
Creators: name: Kim, Mi-Sun
name: Kim, Seung-Bum
name: Cha, Chang-Jun
name: Im, Wan-Taek
name: Kim, Won-Yong
name: Kim, Myung-Kyum
name: Jeon, Che-Ok
name: Yi, Hana
name: Yoon, Jung-Hoon
name: Seong, Hyung-Rak Kim and Chi-Nam
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Bacteria
Actinobacteria
Actinobacteridae
Actinomycetales
Nocardioidaceae
Aeromicrobium
Aeromicrobium marinum

description: Description of Aeromicrobium marinum BSSP-M 28
Cells are aerobic, Gram­staining­positive, non­flagellated and rod shaped. Colonies are circular, slightly convex, glistening and yellowish white colored after incubation for 5 days on marine agar at 25℃. In the API 20NE system, positive reaction for hydrolysis of gelatin and utilization of D-glucose. In the API 20NE system, negative reaction for nitrate reduction, indole production, glucose fermentation, arginine dihydrolase, urease activity, hydrolysis of esculin, β-galactosidase activity, oxidase activity and utilization of L-arabinose, D-mannose, D-mannitol, N ­acetyl­glucosamine, D­maltose, potassium gluconate, capric acid, adipic acid, malic acid, trisodium citrate and phenylacetic acid. Strain BSSP­M28 (= NIBRBAC00050 3336) was isolated from tidal flat sediment in Boryeong, Chungcheongnam Province, Korea (36°20′15″N 126°53′ 93″E).
description: Published as part of Kim, Mi-Sun, Kim, Seung-Bum, Cha, Chang-Jun, Im, Wan-Taek, Kim, Won-Yong, Kim, Myung-Kyum, Jeon, Che-Ok, Yi, Hana, Yoon, Jung-Hoon & Seong, Hyung-Rak Kim and Chi-Nam, 2021, Description of unrecorded bacterial species belonging to the phylum Actinobacteria in Korea, pp. 23-45 in Journal of Species Research 10 (1) on page 38, DOI: 10.12651/JSR.2021.10.1.023, http://zenodo.org/record/12753239
Additional file 3: Table S2. of The nasopharyngeal microbiota of beef cattle before and after transport to a feedlot
Creators: name: Holman, Devin
name: Timsit, Edouard
name: Amat, Samat
name: D. Abbott
name: Buret, Andre
name: Alexander, Trevor
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Calves positive for Pasteurella multocida by culturing of nasopharyngeal swabs. (DOCX 12 kb)
Additional file 2: Table S1. of Prevalence study and risk factor analysis of selected bacterial, protozoal and viral, including vector-borne, pathogens in cats from Cyprus
Creators: name: Attipa, Charalampos
name: Papasouliotis, Kostas
name: Solano-Gallego, Laia
name: Baneth, Gad
name: Nachum-Biala, Yaarit
name: Sarvani, Elpida
name: Knowles, Toby
name: Mengi, Sena
name: Morris, David
name: Helps, Chris
name: SĂŠverine Tasker
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: P-values, Ď  2 and degrees of freedom derived from Chi-square analysis for variables in relation to infectious agent or group of infectious agents. (DOCX 35 kb)
Campylopterus largipennis
Creators: name: Lopes, Leonardo Esteves
name: Vasconcelos, Marcelo Ferreira De
name: Gonzaga, Luiz Pedreira
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Aves
Apodiformes
Trochilidae
Campylopterus
Campylopterus largipennis

description: Key to the species of the Campylopterus largipennis complex
1 Light tail tips (LTTs) greyish and short (sum of the length of the LTTs of the three outermost rectrices is ± 34 mm).................................................................................................... C. obscurus
1’ LTTs pure white and long (sum of the length of the LTTs of the three outermost rectrices is Ż 42 mm)................... 2
2 Basal half of outer rectrices bright bluish black................................................... C. largipennis
2’ Basal half of outer rectrices bright bronze green.............................................................3
3 Larger (body weight generally above 7.5 g); LTTs proportionally shorter (sum of the length of LTT-2 [from outside] and LTT-3 <44% wing length); rectrices usually broader and less pointed.................................... C. diamantinensis
3’ Smaller (body weight generally bellow 7.5 g); LTTs proportionally longer (sum of the length of LTT-2 [from outside] and LTT- 3>44% wing length); rectrices usually narrower and more pointed................................. C. calcirupicola
description: Published as part of Lopes, Leonardo Esteves, Vasconcelos, Marcelo Ferreira De & Gonzaga, Luiz Pedreira, 2017, A cryptic new species of hummingbird of the Campylopterus largipennis complex (Aves: Trochilidae), pp. 1-33 in Zootaxa 4268 (1) on page 23, DOI: 10.11646/zootaxa.4268.1.1, http://zenodo.org/record/579854
Nocardioides phosphati BT
Creators: name: Kim, Mi-Sun
name: Kim, Seung-Bum
name: Cha, Chang-Jun
name: Im, Wan-Taek
name: Kim, Won-Yong
name: Kim, Myung-Kyum
name: Jeon, Che-Ok
name: Yi, Hana
name: Yoon, Jung-Hoon
name: Seong, Hyung-Rak Kim and Chi-Nam
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Bacteria
Actinobacteria
Actinobacteridae
Actinomycetales
Nocardioidaceae
Nocardioides
Nocardioides phosphati

description: Description of Nocardioides phosphati BT 343
Cells are aerobic, Gram-staining-positive, non-flagellated and rod shaped. Colonies are circular, convex, smooth and white colored after incubation for 3 days on R2 A agar at 25℃. In the API 20NE system, positive reaction for nitrate reduction, arginine dihydrolase, urease activity and utilization of D-glucose, L-arabinose (weak), N ­acetyl­glucosamine (weak), potassium gluconate, capric acid (weak), adipic acid (weak), malic acid and trisodium citrate. In the API 20NE system, negative reaction for indole production, glucose fermentation, hydrolysis of esculin and gelatin, β-galactosidase activity, oxidase activity and utilization of D­mannose, D­mannitol, D­maltose and phenylacetic acid. Strain BT343 (= NIBRBAC000502998) was isolated from soil in Jeju Island, Korea (33°28′30.5″N 126°30′ 39.4″E).
description: Published as part of Kim, Mi-Sun, Kim, Seung-Bum, Cha, Chang-Jun, Im, Wan-Taek, Kim, Won-Yong, Kim, Myung-Kyum, Jeon, Che-Ok, Yi, Hana, Yoon, Jung-Hoon & Seong, Hyung-Rak Kim and Chi-Nam, 2021, Description of unrecorded bacterial species belonging to the phylum Actinobacteria in Korea, pp. 23-45 in Journal of Species Research 10 (1) on page 38, DOI: 10.12651/JSR.2021.10.1.023, http://zenodo.org/record/12753239
Additional file 3: Table S2. of The nasopharyngeal microbiota of beef cattle before and after transport to a feedlot
Creators: name: Holman, Devin
name: Timsit, Edouard
name: Amat, Samat
name: D. Abbott
name: Buret, Andre
name: Alexander, Trevor
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Calves positive for Pasteurella multocida by culturing of nasopharyngeal swabs. (DOCX 12 kb)
Additional file 1: of Sepsis recognition in the emergency department – impact on quality of care and outcome?
Creators: name: Morr, Marius
name: Lukasz, Alexander
name: Rübig, Eva
name: Pavenstädt, Hermann
name: Kümpers, Philipp
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Marine Biology
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: Baseline characteristics of all included patients (table). (PDF 169 kb)
Additional file 13 of Proteobacteria explain significant functional variability in the human gut microbiome
Creators: name: Bradley, Patrick
name: Pollard, Katherine
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Physiology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: Figure S12. Variable gene families are less-often correlated to measured host characteristics or enterotype-associated taxa and are more often correlated to Proteobacterial clades. (A-C) Bar plots give the fraction of gene families with at least one bacterial or archaeal representative in each category (significantly invariable, non-significant, and significantly variable) that were significantly correlated to various sample characteristics or taxonomic abundances, using partial Kendall’s τ to account for study effects and a permutation test to assess significance. (A) Fraction correlating (q≤0.05) to average genome size (AGS), the ratio of Bacteroidetes to Firmicutes (B/F ratio), and a measure of α-diversity (Shannon index). (B) Fraction correlating (q≤0.05) to the predicted abundance of specific bacterial clades (the genera Bacteroides and Prevotella, and the families Ruminococcaceae and Enterobacteriaceae). (C) Fraction correlating (q≤0.1) to classes of Proteobacteria. (*** p≤10−8 by chi-squared test after Bonferroni correction; ** p≤10−4.) (D-E) Significant enrichment for variable gene families is not explained by taxon abundance or prevalence. log10(abundance) (D) and log10(prevalence) (E) were plotted vs. the degree of enrichment for variable gene families (a log-ratio of the number of significantly associated variable vs. invariable genes, with a pseudocount to avoid division by zero). Each family is represented as a circle; filled green circles represent significant (Bonferroni p<10−2) enrichments for variable, invariable, or non-significant gene families. Considering taxa with significant enrichments, there is no significant correlation with abundance (r=−0.1, p=0.58) or prevalence (r=−0.07, p=0.72). (PDF 200 kb)
Marmoricola aquaticus Menezes et al. 2015
Creators: name: Kim, Mi-Sun
name: Kim, Seung-Bum
name: Cha, Chang-Jun
name: Im, Wan-Taek
name: Kim, Won-Yong
name: Kim, Myung-Kyum
name: Jeon, Che-Ok
name: Yi, Hana
name: Yoon, Jung-Hoon
name: Seong, Hyung-Rak Kim and Chi-Nam
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Bacteria
Actinobacteria
Actinobacteridae
Actinomycetales
Nocardioidaceae
Marmoricola
Marmoricola aquaticus

description: Description of Marmoricola aquaticus 19D1C14
Cells are aerobic, Gram­staining­positive, non­flagellated and pleomorphic. Colonies are circular, convex and orange colored after incubation for 4 days on MH agar at 30℃. In the API 20NE system, positive reaction for hydrolysis of esculin and gelatin, β-galactosidase activity and utilization of D-glucose, L-arabinose, D-mannose (weak), D­mannitol, N ­acetyl­glucosamine, D­maltose, potassium gluconate, adipic acid (weak) and malic acid. In the API 20NE system, negative reaction for nitrate reduction, indole production, glucose fermentation, arginine dihydrolase, urease activity, oxidase activity and utilization of capric acid, trisodium citrate and phenylacetic acid. Strain 19D1C14 (= NIBRBAC000503258) was isolated from soil in the Dong River, Gangwon Province, Korea (37°22′56.8″N 128°40′01.2″E).
description: Published as part of Kim, Mi-Sun, Kim, Seung-Bum, Cha, Chang-Jun, Im, Wan-Taek, Kim, Won-Yong, Kim, Myung-Kyum, Jeon, Che-Ok, Yi, Hana, Yoon, Jung-Hoon & Seong, Hyung-Rak Kim and Chi-Nam, 2021, Description of unrecorded bacterial species belonging to the phylum Actinobacteria in Korea, pp. 23-45 in Journal of Species Research 10 (1) on page 38, DOI: 10.12651/JSR.2021.10.1.023, http://zenodo.org/record/12753239
Additional file 13 of Proteobacteria explain significant functional variability in the human gut microbiome
Creators: name: Bradley, Patrick
name: Pollard, Katherine
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Physiology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences

description: Figure S12. Variable gene families are less-often correlated to measured host characteristics or enterotype-associated taxa and are more often correlated to Proteobacterial clades. (A-C) Bar plots give the fraction of gene families with at least one bacterial or archaeal representative in each category (significantly invariable, non-significant, and significantly variable) that were significantly correlated to various sample characteristics or taxonomic abundances, using partial Kendall’s τ to account for study effects and a permutation test to assess significance. (A) Fraction correlating (q≤0.05) to average genome size (AGS), the ratio of Bacteroidetes to Firmicutes (B/F ratio), and a measure of α-diversity (Shannon index). (B) Fraction correlating (q≤0.05) to the predicted abundance of specific bacterial clades (the genera Bacteroides and Prevotella, and the families Ruminococcaceae and Enterobacteriaceae). (C) Fraction correlating (q≤0.1) to classes of Proteobacteria. (*** p≤10−8 by chi-squared test after Bonferroni correction; ** p≤10−4.) (D-E) Significant enrichment for variable gene families is not explained by taxon abundance or prevalence. log10(abundance) (D) and log10(prevalence) (E) were plotted vs. the degree of enrichment for variable gene families (a log-ratio of the number of significantly associated variable vs. invariable genes, with a pseudocount to avoid division by zero). Each family is represented as a circle; filled green circles represent significant (Bonferroni p<10−2) enrichments for variable, invariable, or non-significant gene families. Considering taxa with significant enrichments, there is no significant correlation with abundance (r=−0.1, p=0.58) or prevalence (r=−0.07, p=0.72). (PDF 200 kb)
Lentzea albidocapillata subsp. albidocapillata Nouioui et al. 2018
Creators: name: Kim, Mi-Sun
name: Kim, Seung-Bum
name: Cha, Chang-Jun
name: Im, Wan-Taek
name: Kim, Won-Yong
name: Kim, Myung-Kyum
name: Jeon, Che-Ok
name: Yi, Hana
name: Yoon, Jung-Hoon
name: Seong, Hyung-Rak Kim and Chi-Nam
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Bacteria
Actinobacteria
Actinobacteridae
Actinomycetales
Pseudonocardiaceae
Lentzea
Lentzea albidocapillata
Lentzea albidocapillata subsp. albidocapillata

description: Description of Lentzea albidocapillata subsp. albidocapillata BSSP-M 29
Cells are aerobic, Gram­staining­positive, non­flagellated and rod shaped. Colonies are circular and yellowish gray colored after incubation for 3 days on marine agar at 30℃. In the API 20NE system, positive reaction for arginine dihydrolase, urease activity, hydrolysis of esculin and gelatin, β-galactosidase activity and utilization of D-glucose, L­arabinose, D­mannose, D­mannitol, N ­acetyl­glucosamine, D­maltose and malic acid. In the API 20NE system, negative reaction for nitrate reduction, indole production, glucose fermentation, oxidase activity and utilization of potassium gluconate, capric acid, adipic acid, trisodium citrate and phenylacetic acid. Strain BSSP­M29 (= NIBRBAC000503328) was isolated from tidal flat sediment in Boryeong, Chungcheongnam Province, Korea (36°20′15″N 126°53′93″E).
description: Published as part of Kim, Mi-Sun, Kim, Seung-Bum, Cha, Chang-Jun, Im, Wan-Taek, Kim, Won-Yong, Kim, Myung-Kyum, Jeon, Che-Ok, Yi, Hana, Yoon, Jung-Hoon & Seong, Hyung-Rak Kim and Chi-Nam, 2021, Description of unrecorded bacterial species belonging to the phylum Actinobacteria in Korea, pp. 23-45 in Journal of Species Research 10 (1) on page 39, DOI: 10.12651/JSR.2021.10.1.023, http://zenodo.org/record/12753239
Additional file 30: of A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis
Creators: name: Taroni, Jaclyn
name: Greene, Casey
name: Martyanov, Viktor
name: Tammara Wood
name: Christmann, Romy
name: Farber, Harrison
name: Lafyatis, Robert
name: Denton, Christopher
name: Hinchcliff, Monique
name: Pioli, Patricia
name: J. Mahoney
name: Whitfield, Michael
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Space Science
subject: Cell Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 60506 Virology

description: Supplementary figures and legends. (PDF 3174 kb)
Additional file 30: of A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis
Creators: name: Taroni, Jaclyn
name: Greene, Casey
name: Martyanov, Viktor
name: Tammara Wood
name: Christmann, Romy
name: Farber, Harrison
name: Lafyatis, Robert
name: Denton, Christopher
name: Hinchcliff, Monique
name: Pioli, Patricia
name: J. Mahoney
name: Whitfield, Michael
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Space Science
subject: Cell Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Virology

description: Supplementary figures and legends. (PDF 3174 kb)
Lentzea guizhouensis BT
Creators: name: Kim, Mi-Sun
name: Kim, Seung-Bum
name: Cha, Chang-Jun
name: Im, Wan-Taek
name: Kim, Won-Yong
name: Kim, Myung-Kyum
name: Jeon, Che-Ok
name: Yi, Hana
name: Yoon, Jung-Hoon
name: Seong, Hyung-Rak Kim and Chi-Nam
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Bacteria
Actinobacteria
Actinobacteridae
Actinomycetales
Pseudonocardiaceae
Lentzea
Lentzea guizhouensis

description: Description of Lentzea guizhouensis BT 46
Cells are aerobic, Gram-staining-positive, non-flagellated and rod shaped. Colonies are circular, convex, smooth and white colored after incubation for 3 days on R2 A agar at 25℃. In the API 20NE system, positive reaction for nitrate reduction, hydrolysis (weak) of esculin and gelatin and β-galactosidase activity (weak). In the API 20NE system, negative reaction for indole production, glucose fermentation, arginine dihydrolase, urease activity, oxidase activity and utilization of D-glucose, L-arabinose, Dmannose, D­mannitol, N ­acetyl­glucosamine, D­maltose, potassium gluconate, capric acid, adipic acid, malic acid, trisodium citrate and phenylacetic acid. Strain BT46 (= NIBR BAC000502986) was isolated from soil in Pyeongchang, Gangwon Province, Korea (37°42′21.1″N 128°43′01.9″E).
description: Published as part of Kim, Mi-Sun, Kim, Seung-Bum, Cha, Chang-Jun, Im, Wan-Taek, Kim, Won-Yong, Kim, Myung-Kyum, Jeon, Che-Ok, Yi, Hana, Yoon, Jung-Hoon & Seong, Hyung-Rak Kim and Chi-Nam, 2021, Description of unrecorded bacterial species belonging to the phylum Actinobacteria in Korea, pp. 23-45 in Journal of Species Research 10 (1) on page 39, DOI: 10.12651/JSR.2021.10.1.023, http://zenodo.org/record/12753239
Otolemur garnettii subsp. lasiotis
Creators: name: Turni, Hendrik
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Primates
Galagidae
Otolemur
Otolemur garnettii
Otolemur garnettii lasiotis (peters, 1876)

description: Otolicnus lasiotis Peters, 1876
Monatsberichte der Königlich Preussischen Akademie der Wissenschaften zu Berlin, p. 912
Current valid name: Otolemur garnettii lasiotis (Peters, 1876)
Holotype: ZMB 5117 (= A 5107), male, juvenile, skull, skin in alcohol [skin not located]; Mombasa, Kenya; collected by Hildebrandt, 1876.
description: Published as part of Turni, Hendrik, 2024, Type specimens of Primates (Mammalia) in the collections of the Museum für Naturkunde Berlin, pp. 151-194 in Zootaxa 5543 (2) on page 156, DOI: 10.11646/zootaxa.5543.2.1, http://zenodo.org/record/14385859
Kitasatospora purpeofusca MMS
Creators: name: Kim, Mi-Sun
name: Kim, Seung-Bum
name: Cha, Chang-Jun
name: Im, Wan-Taek
name: Kim, Won-Yong
name: Kim, Myung-Kyum
name: Jeon, Che-Ok
name: Yi, Hana
name: Yoon, Jung-Hoon
name: Seong, Hyung-Rak Kim and Chi-Nam
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Bacteria
Actinobacteria
Actinobacteridae
Actinomycetales
Streptomycetaceae
Kitasatospora
Kitasatospora purpeofusca

description: Description of Kitasatospora purpeofusca MMS 19- T 35
Cells are aerobic, Gram­staining­positive, non­flagellated and filamentous or rod shaped. Colonies are circular, convex, erose and brown colored after incubation for 3 days on R2 A agar at 30℃. In the API 20NE system, positive reaction for nitrate reduction, hydrolysis of gelatin, β-galactosidase activity and utilization of D-glucose, N ­acetyl­glucosamine, potassium gluconate and malic acid. In the API 20NE system, negative reaction for indole production, glucose fermentation, arginine dihydrolase, urease activity, hydrolysis of esculin, and utilization of L­arabinose, D­mannose, D­mannitol, D­maltose, capric acid, adipic acid, trisodium citrate and phenylacetic acid. Strain MMS19 ­ T35 (= NIBRBAC000503382) was isolated from soil in Gurye, Jeollanam Province, Korea (35°16′ 25.9″N 127°28′34.5″E).
description: Published as part of Kim, Mi-Sun, Kim, Seung-Bum, Cha, Chang-Jun, Im, Wan-Taek, Kim, Won-Yong, Kim, Myung-Kyum, Jeon, Che-Ok, Yi, Hana, Yoon, Jung-Hoon & Seong, Hyung-Rak Kim and Chi-Nam, 2021, Description of unrecorded bacterial species belonging to the phylum Actinobacteria in Korea, pp. 23-45 in Journal of Species Research 10 (1) on page 39, DOI: 10.12651/JSR.2021.10.1.023, http://zenodo.org/record/12753239
Additional file 14 of Proteobacteria explain significant functional variability in the human gut microbiome
Creators: name: Bradley, Patrick
name: Pollard, Katherine
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Figure S16. Proteobacteria, particularly Enterobacteriaceae, are still most strongly associated with variable gene families following clr-transformation. This transformation eliminates spurious correlation arising from the analysis of compositional data such as taxonomic relative abundances (see Additional file 9: Supplementary Information for details). (A–C) Associations of phylum abundances with gene families. Associations were computed as in Fig. 7 except using clr-transformed data, with an association significance threshold of (A) q≤0.05, (B) q≤0.035, and (C) q≤0.02. (D–F) Same as A–C, but for clr-transformed “enterotype” taxa (compare Figure S12B). (G) Same as A and D, but for clr-transformed taxonomic families. (H-I) Significant enrichment for variable/invariable gene families, based on clr-transformed data, plotted vs. (H) abundance and (I) prevalence (compare Figure S12D-E). (PDF 1177 kb)
Additional file 14 of Proteobacteria explain significant functional variability in the human gut microbiome
Creators: name: Bradley, Patrick
name: Pollard, Katherine
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Figure S16. Proteobacteria, particularly Enterobacteriaceae, are still most strongly associated with variable gene families following clr-transformation. This transformation eliminates spurious correlation arising from the analysis of compositional data such as taxonomic relative abundances (see Additional file 9: Supplementary Information for details). (A–C) Associations of phylum abundances with gene families. Associations were computed as in Fig. 7 except using clr-transformed data, with an association significance threshold of (A) q≤0.05, (B) q≤0.035, and (C) q≤0.02. (D–F) Same as A–C, but for clr-transformed “enterotype” taxa (compare Figure S12B). (G) Same as A and D, but for clr-transformed taxonomic families. (H-I) Significant enrichment for variable/invariable gene families, based on clr-transformed data, plotted vs. (H) abundance and (I) prevalence (compare Figure S12D-E). (PDF 1177 kb)
Callithrix chrysoleuca
Creators: name: Turni, Hendrik
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Primates
Callitrichidae
Callithrix
Callithrix chrysoleuca

description: Hapale (Callithrix) chrysoleuca Wagner, 1842
Archiv für Naturgeschichte Serie 8, p. 357
Current valid name: Callithrix chrysoleuca (Wagner, 1842)
Syntype: ZMB 3191, male, skull, skin; Borba, Rio Madeira, Amazonas, Brazil; collected by Natterer 1830, received from Museum Wien.
Comment: Further four syntypes are located in the Naturhistorisches Museum Wien (NMW B 3456, B 3455, B3457, ST 970), one syntype in the Natural History Museum London (BMNH 1870.3.10.3), and one syntype in the Naturalis Biodiversity Center Leiden (RMNH.MAM.39099).
description: Published as part of Turni, Hendrik, 2024, Type specimens of Primates (Mammalia) in the collections of the Museum für Naturkunde Berlin, pp. 151-194 in Zootaxa 5543 (2) on page 156, DOI: 10.11646/zootaxa.5543.2.1, http://zenodo.org/record/14385859
title: Russian economic transformation
Creators: name: Turdyeva, Natalia
Publisher: name: Bank of Russia
Year: 2024
Subjects: subject: Economics and business
subject: FOS: Economics and business

description: We are considering the introduction of climate policy in Russia under conditions of quantitative export restrictions. We have enhanced the model employed in the article (Burova et al., 2023) by incorporating a mechanism for quantitative trade restrictions. We demonstrate that in the case of deterioration in external economic conditions, such as a decline in the prices of Russian exports, the significance of quantitative export restrictions becomes secondary. The reason is that at low export prices the optimal physical volume of exports only marginally exceeds or may even be less than the quantitative restrictions. Without unrestricted access to global green technologies, ambitious climate policy goals may become excessively costly in terms of economic impact. In the presented model, attempting to achieve a 70% reduction in CO2-equivalent emissions from the 2016 level, coupled with decreasing prices for Russian exports and quantitative trade restrictions, could result in a deviation of GDP in 2040 by 11% from the baseline scenario, which implies maintaining the current status quo in climate policy both in Russia and globally. A more economically viable approach seems to be a moderate climate policy: achieving a 36% reduction in emissions from combustion compared to the 2016 level results in a 4.7% downward deviation of real GDP in 2040 from the baseline scenario. Only 0.3% of this decrease is attributed to the impact of domestic climate policy through an emissions trading system. The remaining 4.4% is explained by the deterioration of external economic conditions, stemming from the climate policies of other countries and quantitative restrictions on Russian exports. In the absence of a proactive climate policy, the carbon intensity of Russian GDP rises, amplifying transitional and physical risks of addressing the consequences of climate change. Essential measures to mitigate these risks involve the promotion and development of green industries, particularly those oriented towards exports.
Kitasatospora xanthocidica LPB
Creators: name: Kim, Mi-Sun
name: Kim, Seung-Bum
name: Cha, Chang-Jun
name: Im, Wan-Taek
name: Kim, Won-Yong
name: Kim, Myung-Kyum
name: Jeon, Che-Ok
name: Yi, Hana
name: Yoon, Jung-Hoon
name: Seong, Hyung-Rak Kim and Chi-Nam
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Bacteria
Actinobacteria
Actinobacteridae
Actinomycetales
Streptomycetaceae
Kitasatospora
Kitasatospora xanthocidica

description: Description of Kitasatospora xanthocidica LPB 0280
Cells are aerobic, Gram­staining­positive, non­flagellated and rod shaped. Colonies are irregular, undulate, flat and cream colored after incubation for 3 days on TSA at 25℃. In the API 20NE system, positive reaction for hydrolysis of esculin (weak), oxidase activity and utilization of D­glucose, L­arabinose (weak), N ­acetyl­glucosamine, potassium gluconate, malic acid (weak) and trisodium citrate (weak). In the API 20NE system, negative reaction for nitrate reduction, indole production, glucose fermentation, arginine dihydrolase, urease activity, hydrolysis of gelatin, β-galactosidase activity and utilization of D-mannose, D­mannitol, D­maltose, capric acid, adipic acid and phenylacetic acid. Strain LPB0280 (= NIBRBAC000503341) was isolated from soil in Seoul, Korea (37°35′5.01″N 127° 1′35.69″E).
description: Published as part of Kim, Mi-Sun, Kim, Seung-Bum, Cha, Chang-Jun, Im, Wan-Taek, Kim, Won-Yong, Kim, Myung-Kyum, Jeon, Che-Ok, Yi, Hana, Yoon, Jung-Hoon & Seong, Hyung-Rak Kim and Chi-Nam, 2021, Description of unrecorded bacterial species belonging to the phylum Actinobacteria in Korea, pp. 23-45 in Journal of Species Research 10 (1) on page 39, DOI: 10.12651/JSR.2021.10.1.023, http://zenodo.org/record/12753239
Haemaphysalis Koch 1844
Creators: name: Apanaskevich, Dmitry A.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Ixodida
Ixodidae
Haemaphysalis

description: Key to males and females of North American Haemaphysalis species*
1. Palpal segment III with posterodorsal spur............................... H. longicornis Neumann, 1901 (introduced)
Palpal segment III without dorsal spur..................................................................... 2
2. Palpal segment III with very long and narrow ventral spur........................................... H. juxtakochi
Palpal segment III with short ventral spur.................................................................. 3
3. Hypostome with dentition 5/5, coxa I with internal spur only......................................... H. chordeilis
Hypostome with dentition 3/3, coxa I with internal and external spurs............................................ 4
4. Palpal segment II with longer and more acute lateral salience, palpal segment III with short and broad ventral spur, coxa I with short and broad internal spur.............................................................. H. leporispalustris
Palpal segment II with shorter and more obtuse lateral salience, palpal segment III with longer and narrower ventral spur, coxa I with longer and narrow internal spur......................................................... H. mariae n. sp.
*Another Haemaphysalis species introduced to the US, H. punctata Canestrini & Fanzago, 1878, is excluded from the key since no morphological evidence has ever been published supporting its identity in the country.
description: Published as part of Apanaskevich, Dmitry A., 2024, Description of a new species of Haemaphysalis Koch, 1844 (Acari: Ixodidae), a parasite of hares and rabbits (Lagomorpha: Leporidae) in Texas, Oklahoma and Colorado (USA), that was misidentified as H. leporispalustris (Packard, 1869) for more than a century, pp. 435-450 in Zootaxa 5486 (3) on page 449, DOI: 10.11646/zootaxa.5486.3.6, http://zenodo.org/record/13210062
A fast phase and RSSI-based localization method using Passive RFID System with Mobile Platform
Creators: name: Liu, Zheng
name: Fu, Zhe
name: Li, Tongyun
name: White, Ian
name: Penty, Richard
name: Crisp, Michael
Publisher: name: IEEE
Year: 2021

description: A novel localization method is proposed and demonstrated which exploits the phase profile combined with the location of the moving robot to locate target tags using only a single straight-line interrogator antenna trajectory. A system that integrates a mobile robot with an integrated RFID reader and antenna is used to obtain phase measurements of target tags when the robot is moving along its trajectory. The cross-range location of the target is obtained from the stationary point of the fitted phase curve. The down range distance is estimated by finding the integer number of wavelengths which fits the cross-range location and curve shape. The proposed method could reduce the localization error to around 12 cm which is similar to the SAR method using a straight-line trajectory, but with much lower computational complexity.
Additional file 15 of Proteobacteria explain significant functional variability in the human gut microbiome
Creators: name: Bradley, Patrick
name: Pollard, Katherine
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Figure S13. Genes only annotated in Proteobacteria or Euryarchaeota, but not Actinobacteria or Firmicutes, are more likely to be variable. (A) Bar plots give the fraction of gene families with at least one bacterial or archaeal representative in each category (significantly invariable, non-significant, and significantly variable) that were annotated onlyin the phylum listed (x-axis). Significance was assessed as in Additional file 13: Figure S12, using a Holm correction for significance. p values are color-coded by whether a phylum was enriched (red), depleted (blue), or neither (gray) for variable gene families (Holm-corrected pâ ¤0.1). (B) Bar plots are as per (A), but test results come from a test sampling equal parts phylum-specific genes and genes annotated in all four listed phyla, with phylum-specific genes themselves uniformly sampled across phyla. (PDF 149 kb)
title: ÐÐµÐ²ÐµÐ»Ð¾Ð¿Ð¼ÐµÐ½Ñ ÑÐµÑÑÐ¸ÑÐ¾ÑÐ¸Ð¹ Ð¡Ð°Ð½ÐºÑ-ÐÐµÑÐµÑÐ±ÑÑÐ³Ð° Ñ ÑÐ°Ð·ÑÐ°Ð±Ð¾ÑÐºÐ¾Ð¹ ÑÐ¸Ð¿Ð¾Ð²Ð¾Ð³Ð¾ Ð¶Ð¸Ð»Ð¾Ð³Ð¾ Ð·Ð´Ð°Ð½Ð¸Ñ
title: Ð±Ð°ÐºÐ°Ð»Ð°Ð²ÑÑÐºÐ°Ñ ÑÐ°Ð±Ð¾ÑÐ°
titleType: Subtitle
Creators: name: ÐÐ¾Ð»ÑÑÐ°ÐºÐ¾Ð², ÐÐ¸ÐºÐ¾Ð»Ð°Ð¹
Publisher: name: Ð¡Ð°Ð½ÐºÑ-ÐÐµÑÐµÑÐ±ÑÑÐ³ÑÐºÐ¸Ð¹ Ð¿Ð¾Ð»Ð¸ÑÐµÑÐ½Ð¸ÑÐµÑÐºÐ¸Ð¹ ÑÐ½Ð¸Ð²ÐµÑÑÐ¸ÑÐµÑ ÐÐµÑÑÐ° ÐÐµÐ»Ð¸ÐºÐ¾Ð³Ð¾
Year: 2016
Subjects: Ð³ÑÐ°Ð´Ð¾ÑÑÑÐ¾Ð¸ÑÐµÐ»ÑÑÑÐ²Ð¾
ÑÑÐ±Ð°Ð½Ð¸Ð·Ð°ÑÐ¸Ñ
ÑÐ°Ð¹Ð¾Ð½Ð½Ð¾Ðµ Ð¿Ð»Ð°Ð½Ð¸ÑÐ¾Ð²Ð°Ð½Ð¸Ðµ
urban planning
system of spandrel beams
spatial planning

description: Ð Ð´Ð°Ð½Ð½Ð¾Ð¹ ÑÐ°Ð±Ð¾ÑÐµ ÑÐ°Ð·ÑÐ°Ð±Ð¾ÑÐ°Ð½Ð¾ ÑÐµÑÐµÐ½Ð¸Ðµ Ð´Ð»Ñ ÑÐ¸Ð¿Ð¾Ð²Ð¾Ð³Ð¾ Ð¶Ð¸Ð»Ð¾Ð³Ð¾ Ð·Ð´Ð°Ð½Ð¸Ñ, ÑÐ°Ð·ÑÐ°Ð±Ð¾ÑÐ°Ð½Ñ ÑÐ°Ð·Ð´ÐµÐ»Ñ Ð¿ÑÐ¾ÐµÐºÑÐ½Ð¾Ð¹ Ð´Ð¾ÐºÑÐ¼ÐµÐ½ÑÐ°ÑÐ¸Ð¸ Ð² ÑÐ¾Ð¾ÑÐ²ÐµÑÑÑÐ²Ð¸Ð¸ Ñ ÐÐ¾ÑÑÐ°Ð½Ð¾Ð²Ð»ÐµÐ½Ð¸ÐµÐ¼ ÐÑÐ°Ð²Ð¸ÑÐµÐ»ÑÑÑÐ²Ð° â87. ÐÑÐµÐ´Ð»Ð¾Ð¶ÐµÐ½Ð° ÐºÐ¾Ð½ÑÐµÐ¿ÑÐ¸Ñ ÑÐ°Ð·Ð²Ð¸ÑÐ¸Ñ ÑÐµÑÑÐ¸ÑÐ¾ÑÐ¸Ð¸ ÐÑÐ°ÑÐ½Ð¾Ð³Ð²Ð°ÑÐ´ÐµÐ¹ÑÐºÐ¾Ð³Ð¾ ÑÐ°Ð¹Ð¾Ð½Ð°. ÐÐ»Ñ ÑÐ¾ÑÐ¼Ð¸ÑÐ¾Ð²Ð°Ð½Ð¸Ñ Ð¾Ð±ÑÐµÑÑÐ²ÐµÐ½Ð½Ð¾Ð³Ð¾ Ð¿ÑÐ¾ÑÑÑÐ°Ð½ÑÑÐ²Ð° Ð´Ð»Ñ Ð³Ð¾ÑÐ¾Ð¶Ð°Ð½ ÑÐ°Ð·ÑÐ°Ð±Ð¾ÑÐ°Ð½ Ð´Ð¸Ð·Ð°Ð¹Ð½ Ð½Ð°Ð±ÐµÑÐµÐ¶Ð½Ð¾Ð¹.
Additional file 2: of Allelic incompatibility can explain female biased sex ratios in dioecious plants
Creators: name: Pucholt, Pascal
name: HallingbĂ¤Ck, Henrik
name: Berlin, Sofia
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 60506 Virology

description: Genetic map and syntheny analysis. S. viminalis whole genome genetic map and analysis of syntheny with the P. trichocarpa genome sequence. (PDF 200Â kb)
Streptomyces badius Pridham et al. 1958
Creators: name: Kim, Mi-Sun
name: Kim, Seung-Bum
name: Cha, Chang-Jun
name: Im, Wan-Taek
name: Kim, Won-Yong
name: Kim, Myung-Kyum
name: Jeon, Che-Ok
name: Yi, Hana
name: Yoon, Jung-Hoon
name: Seong, Hyung-Rak Kim and Chi-Nam
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Bacteria
Actinobacteria
Actinobacteridae
Actinomycetales
Streptomycetaceae
Streptomyces
Streptomyces badius

description: Description of Streptomyces badius 9C-1
Cells are aerobic, Gram-staining-positive, non-flagellated and filamentous. Colonies are circular, spore-forming and yellow colored after incubation for 3 days on R2 A agar at 20-40℃. In the API 20NE system, positive reaction for urease activity, hydrolysis of esculin and gelatin and β-galactosidase activity. In the API 20NE system, negative reaction for nitrate reduction, indole production, glucose fermentation, arginine dihydrolase, oxidase activity and utilization of D-glucose, L-arabinose, D-mannose, D­mannitol, N ­acetyl­glucosamine, D­maltose, potassium gluconate, capric acid, adipic acid, malic acid, trisodium citrate and phenylacetic acid. Strain 9C­1 (= NIBRBAC 000503221) was isolated from soil in Yeongwol, Gangwon Province, Korea (37°13′52.7″N 128°28′59.0″E).
description: Published as part of Kim, Mi-Sun, Kim, Seung-Bum, Cha, Chang-Jun, Im, Wan-Taek, Kim, Won-Yong, Kim, Myung-Kyum, Jeon, Che-Ok, Yi, Hana, Yoon, Jung-Hoon & Seong, Hyung-Rak Kim and Chi-Nam, 2021, Description of unrecorded bacterial species belonging to the phylum Actinobacteria in Korea, pp. 23-45 in Journal of Species Research 10 (1) on page 40, DOI: 10.12651/JSR.2021.10.1.023, http://zenodo.org/record/12753239
Additional file 2: of Allelic incompatibility can explain female biased sex ratios in dioecious plants
Creators: name: Pucholt, Pascal
name: HallingbĂ¤Ck, Henrik
name: Berlin, Sofia
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Virology

description: Genetic map and syntheny analysis. S. viminalis whole genome genetic map and analysis of syntheny with the P. trichocarpa genome sequence. (PDF 200Â kb)
Parameterized families of quadratic fields with $n$-rank at least 2
Creators: name: Hoque, Azizul
name: Kotyada, Srinivas
Publisher: name: arXiv
Year: 2024
Subjects: subject: Number Theory (math.NT)
subject: FOS: Mathematics
subject: 11R29, 11R11

description: We construct parameterized families of imaginary (resp. real) quadratic fields whose class groups have $n$-rank at least $2$.
description: 7 pages. Published in `Class Groups of Number Fields and Related Topics', Springer Proceedings in Mathematics & Statistics, vol 470, Springer, Singapore
Streptacidiphilus carbonis  Kim et al. 2003
Creators: name: Kim, Mi-Sun
name: Kim, Seung-Bum
name: Cha, Chang-Jun
name: Im, Wan-Taek
name: Kim, Won-Yong
name: Kim, Myung-Kyum
name: Jeon, Che-Ok
name: Yi, Hana
name: Yoon, Jung-Hoon
name: Seong, Hyung-Rak Kim and Chi-Nam
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Bacteria
Actinobacteria
Actinobacteridae
Actinomycetales
Streptomycetaceae
Streptacidiphilus
Streptacidiphilus carbonis

description: Description of Streptacidiphilus carbonis S36
Cells are aerobic, Gram-staining-positive and filamentous. Colonies are filamentous, umbonate and white colored after incubation for 3 days on R2 A agar at 25℃. In the API 20NE system, positive reaction for hydrolysis of esculin and utilization of D-glucose, D-mannitol, N ­ acetyl­glucosamine and potassium gluconate. In the API 20NE system, negative reaction for nitrate reduction, indole production, glucose fermentation, arginine dihydrolase, urease activity, hydrolysis of gelatin, β-galactosidase activity, oxidase activity and utilization of L-arabinose, D­mannose, D­maltose, capric acid, adipic acid, malic acid, trisodium citrate and phenylacetic acid. Strain S36 (= NIBRBAC000503409) was isolated from forest soil in Yeongju, Gyeongsangbuk Province, Korea (36°54′ 12.67″N 128°27′32.36″E).
description: Published as part of Kim, Mi-Sun, Kim, Seung-Bum, Cha, Chang-Jun, Im, Wan-Taek, Kim, Won-Yong, Kim, Myung-Kyum, Jeon, Che-Ok, Yi, Hana, Yoon, Jung-Hoon & Seong, Hyung-Rak Kim and Chi-Nam, 2021, Description of unrecorded bacterial species belonging to the phylum Actinobacteria in Korea, pp. 23-45 in Journal of Species Research 10 (1) on page 39, DOI: 10.12651/JSR.2021.10.1.023, http://zenodo.org/record/12753239
Additional file 1: Table S1. of Highly diverse population of Picornaviridae and other members of the Picornavirales, in Cameroonian fruit bats
Creators: name: Yinda, Claude
name: Zell, Roland
name: Deboutte, Ward
name: Zeller, Mark
name: Nádia Conceição-Neto
name: Heylen, Elisabeth
name: Maes, Piet
name: Knowles, Nick
name: Ghogomu, Stephen
name: Ranst, Marc Van
name: Matthijnssens, Jelle
Publisher: name: Figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: List of primers for genome completion. Table S2. Reference sequences used for composition analysis and differentiation of host groups. Figure S1. Phylogenetic relationships of orthologous capsid proteins: (A) P1 of picornaviruses (either 1A-1B-1C-1D or 1AB-1C-1D), (B) VP2-VP4-VP3-VP1 of bacillarnavirus, labyrnavirus and other viruses with a similar genome organization, (C) VP2-VP4-VP3-VP1 of dicistroviruses, (D) three capsid protein domains of yet unassigned, monocistronic viruses with C-terminal structural proteins (posa-, fisa-, husa-, bat posali- and fisalivirus, drosophila Pow Burn virus), and (E) VP2-VP4-VP3-VP1 domains of iflaviruses. Bat viruses of this study are indicated by filled triangles. Unassigned viruses are printed in blue. Bars indicate nucleotide substitutions per site. The trees were inferred with MrBayes 3.2. Numbers at nodes indicate posterior probabilities obtained after 4,250,000 generations (A), 3,000,000 generations (B), and 1,000,000 generations (C, D, E). The GTR + G + I substitution model was used for (A, B), the GTR + G model was used for (C, D, E). (DOCX 188 kb)
Streptomyces albogriseolus Benedict et al. 1954
Creators: name: Kim, Mi-Sun
name: Kim, Seung-Bum
name: Cha, Chang-Jun
name: Im, Wan-Taek
name: Kim, Won-Yong
name: Kim, Myung-Kyum
name: Jeon, Che-Ok
name: Yi, Hana
name: Yoon, Jung-Hoon
name: Seong, Hyung-Rak Kim and Chi-Nam
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Bacteria
Actinobacteria
Actinobacteridae
Actinomycetales
Streptomycetaceae
Streptomyces
Streptomyces albogriseolus

description: Description of Streptomyces albogriseolus R-5
Cells are aerobic, Gram-staining-positive, non-flagellated and rod shaped. Colonies are filamentous, raised, undulate and cream colored after incubation for 3 days on R2 A agar at 37℃. In the API 20NE system, positive reaction for nitrate reduction, glucose fermentation (weak), hydrolysis of esculin (weak) and gelatin, β-galactosidase activity and utilization of D-glucose, L-arabinose, D-mannose, D­mannitol, N ­acetyl­glucosamine, D­maltose, potassium gluconate, adipic acid (weak), malic acid and trisodium citrate. In the API 20NE system, negative reaction for indole production, arginine dihydrolase, urease activity and utilization of capric acid and phenylacetic acid. Strain R-5 (= NIBRBAC000503388) was isolated from soil in Gurye, Jeollanam Province, Korea (35°11′16.0″N 127°33′ 02.5″E).
description: Published as part of Kim, Mi-Sun, Kim, Seung-Bum, Cha, Chang-Jun, Im, Wan-Taek, Kim, Won-Yong, Kim, Myung-Kyum, Jeon, Che-Ok, Yi, Hana, Yoon, Jung-Hoon & Seong, Hyung-Rak Kim and Chi-Nam, 2021, Description of unrecorded bacterial species belonging to the phylum Actinobacteria in Korea, pp. 23-45 in Journal of Species Research 10 (1) on page 39, DOI: 10.12651/JSR.2021.10.1.023, http://zenodo.org/record/12753239
Indotyphlus
Creators: name: Giri, Varad
name: Gower, David J.
name: Wilkinson, Mark
Publisher: name: Zenodo
Year: 2004
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Amphibia
Gymnophiona
Caeciliidae
Indotyphlus

description: Key to the species of Indotyphlus
The following key is based on readily observable annulation characters. At least adults of the two species should also be distinguishable on examination of the region surrounding the vent, which in I. maharashtraensis has a smoother, depressed preanal strip (longer in males).
1 More than 130 primary annuli, with secondary grooves restricted to the posteriormost part of the body, not on the anteriormost 100 primaries ................................. battersbyi
­ May have fewer than 130 primary annuli, with secondary grooves on more than the posteriormost part of the body, beginning anterior to the 100th primary annulus ......... ............................................................................................................ maharashtraensis
description: Published as part of Giri, Varad, Gower, David J. & Wilkinson, Mark, 2004, A new species of Indotyphlus Taylor (Amphibia: Gymnophiona: Caeciliidae) from the Western Ghats, India, pp. 1-19 in Zootaxa 739 on pages 15-16, DOI: 10.5281/zenodo.158097