cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Large-scale assessment of physical activity in a population using high-resolution hip-worn accelerometry: the German National Cohort (NAKO)
Creators: name: Weber, Andrea
name: van Hees, Vincent T.
name: Stein, Michael J.
name: Gastell, Sylvia
name: Steindorf, Karen
name: Herbolsheimer, Florian
name: Ostrzinski, Stefan
name: Pischon, Tobias
name: Brandes, Mirko
name: Krist, Lilian
name: Marschollek, Michael
name: Greiser, Karin Halina
name: Nimptsch, Katharina
name: Brandes, Berit
name: Jochem, Carmen
name: Sedlmeier, Anja M.
name: Berger, Klaus
name: Brenner, Hermann
name: Buck, Christoph
name: Castell, Stefanie
name: Dörr, Marcus
name: Emmel, Carina
name: Fischer, Beate
name: Flexeder, Claudia
name: Harth, Volker
name: Hebestreit, Antje
name: Heise, Jana-Kristin
name: Holleczek, Bernd
name: Keil, Thomas
name: Koch-Gallenkamp, Lena
name: Lieb, Wolfgang
name: Meinke-Franze, Claudia
name: Michels, Karin B.
name: Mikolajczyk, Rafael
name: Kluttig, Alexander
name: Obi, Nadia
name: Peters, Annette
name: Schmidt, Börge
name: Schipf, Sabine
name: Schulze, Matthias B.
name: Teismann, Henning
name: Waniek, Sabina
name: Willich, Stefan N.
name: Leitzmann, Michael F.
name: Baurecht, Hansjörg
Publisher: name: Universität Regensburg
Year: 2024
Subjects: subject: 610 Medizin

description: Large population-based cohort studies utilizing device-based measures of physical activity are crucial to close important research gaps regarding the potential protective effects of physical activity on chronic diseases. The present study details the quality control processes and the derivation of physical activity metrics from 100 Hz accelerometer data collected in the German National Cohort (NAKO). During the 2014 to 2019 baseline assessment, a subsample of NAKO participants wore a triaxial ActiGraph accelerometer on their right hip for seven consecutive days. Auto-calibration, signal feature calculations including Euclidean Norm Minus One (ENMO) and Mean Amplitude Deviation (MAD), identification of non-wear time, and imputation, were conducted using the R package GGIR version 2.10-3. A total of 73,334 participants contributed data for accelerometry analysis, of whom 63,236 provided valid data. The average ENMO was 11.7 ± 3.7 mg (milli gravitational acceleration) and the average MAD was 19.9 ± 6.1 mg. Notably, acceleration summary metrics were higher in men than women and diminished with increasing age. Work generated in the present study will facilitate harmonized analysis, reproducibility, and utilization of NAKO accelerometry data. The NAKO accelerometry dataset represents a valuable asset for physical activity research and will be accessible through a specified application process.
Mixturopoda Baker & Monson 2007
Creators: name: Halliday, R. B.
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Mesostigmata
Metagynuridae
Mixturopoda

description: Mixturopoda Baker & Monson, 2007
Mixturopoda Baker & Monson, 2007: 2.
Type species Mixturopoda evansi Baker & Monson, 2007: 4, by monotypy.
description: Published as part of Halliday, R. B., 2015, Catalogue of genera and their type species in the mite Suborder Uropodina (Acari: Mesostigmata), pp. 101-147 in Zootaxa 3972 (2) on page 121, DOI: 10.11646/zootaxa.3972.2.1, http://zenodo.org/record/232777
Extracurricular Tuition of Mother Tongues and Cultures of Children from Other Nationalities in Slovenia: Practical Implementation
Creators: name: Balažič Bulc, Tatjana
name: Medvešek, Mojca
Publisher: name: Inštitut za narodnostna vprašanja
Year: 2024
Subjects: Extracurricular Tuition of Mother Tongues
immigrants
Slovenia

description: Integrating the mother tongue learning in the education system is one of the key issues facing multilingual and multicultural societies. Given the census data, Slovenia certainly is such a society. According to Eurostat data, in 2023 14.6% of the population of Slovenia was born abroad. This is one of the reasons why the promotion of learning mother tongue by immigrantchildren or children with immigrant background is outlined in various documents on educational language policy in Slovenia. For example, the Primary school act has enabled immigrant children to learn their mother tongue since 1996. The Strategy for the inclusion of migrant children, pupils and students in the Education System of the Republic of Slovenia (2007)promotes the learning of the mother tongue. Two years later, measures to encourage the learning of mother tongue were outlined in the Guidelines for the education of foreign children in kindergartens and schools (2009).These guidelines were supplemented in 2012 by a revised version of the Guidelines for the integration of immigrant children into kindergartens and schools. Learning of mother tongues by students for whom Slovenian is not their native language is also supported in the White paper on education and training in the Republic of Slovenia (2011).In Slovenia, there are three options for learning mother tongue for immigrant students or students with immigrant backgrounds: 1) as supplementary classes in mother tongues and cultures for children of other nationalities; 2) as a compulsory or optional elective subjects; and 3) through language courses offered by various cultural associations. The paper delas with the issues and challenges associated with implementing supplementary classes in mother tongues and cultures for children of other nationalities in Slovenia. In recent years, the number of children attending such classes has increased. However, we also observe negative responsesfrom the majority population towards their implementation. Analyzing the current situation and needs, we aim to identify the key challenges teachers face when delivering supplementary mother tongue and culture classes. To this end, we have conducted an online survey among teachers. The results of the survey will serve as a basis for the development of the guidelines aimedto improving the quality of teaching and providing more support for the implementation of supplementary classes in mother tongues and cultures in Slovenia.
Monomacrodinychus Hirschmann 1975
Creators: name: Halliday, R. B.
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Mesostigmata
Macrodinychidae
Monomacrodinychus

description: Monomacrodinychus Hirschmann, 1975
Macrodinychus (Monomacrodinychus) Hirschmann, 1975d: 35. Type species Macrodinychus (Monomacrodinychus) baloghi Hirschmann, 1975e: 39; 1975f: 43, by original designation.
Notes. The descriptions of Macrodinychus (Monomacrodinychus) and its type species were published in two different papers, with the genus described before its type species. However, since these papers were bound together and published simultaneously, I consider both to be validly published and available.
description: Published as part of Halliday, R. B., 2015, Catalogue of genera and their type species in the mite Suborder Uropodina (Acari: Mesostigmata), pp. 101-147 in Zootaxa 3972 (2) on page 121, DOI: 10.11646/zootaxa.3972.2.1, http://zenodo.org/record/232777
Evaluation of DANS EASY repository based on the FAIR principles
Creators: name: Tsoupra, E.
name: Doorn, P.
name: Fankhauser, E.
Publisher: name: DANS
Year: 2018
Subjects: subject: Interdisciplinary sciences
valueUri: http://www.narcis.nl/classfication/E10000

description: This paper investigates the extent to which the FAIR data principles are implemented in EASY, the Core Trust Seal-certified digital repository of DANS. Based on Boehmer’s evaluation of the compliance of DANS-EASY with the FAIR principles (Boehmer et al. 2017) which attests compliance with 11 out of 15 FAIR principles, this paper discusses every principle and its corresponding metrics. For each of the principles it touches upon the topics of compliance and limitations, providing a critical discussion of the findings. The authors conclude with an overview of EASY’s compliance with the FAIR principles on the metadata and data level as well as with a set of recommendations for further “FAIRification” of EASY.
EOSC-SYNERGY Landscaping Country Report The Netherlands
Creators: name: Doorn, P.K.
Publisher: name: DANS and EOSC-Synergy project
Year: 2020
Subjects: subject: Interdisciplinary sciences
valueUri: http://www.narcis.nl/classfication/E10000
subject: Research Infrastructures; European Open Science Cloud; research data
subject: Temporal coverage: 2015-2020

description: This dataset has been replaced with a new version: see the 'Relations' for the current version.

This landscape analysis report aims to provide an overview of the policies, practices, roadmaps, and strategies around funding, procuring, providing, accessing, and sharing of services and resources in the EOSC scope in The Netherlands. The overview of e-infrastructures, data services, repositories, research infrastructures and related organisations in The Netherlands is based on existing inventories and reports. Data tables on which the report is based are also available.
Urinary soluble CD163 is a putative non-invasive biomarker for primary sclerosing cholangitis
Creators: name: Elger, Tanja
name: Fererberger, Tanja
name: Huss, Muriel
name: Sommersberger, Stefanie
name: Mester, Patricia
name: Stoeckert, Petra
name: Gunawan, Stefan
name: Liebisch, Gerhard
name: Loibl, Johanna
name: Kandulski, Arne
name: Müller, Martina
name: Buechler, Christa
name: Tews, Hauke Christian
Publisher: name: Universität Regensburg
Year: 2024
Subjects: subject: Macrophage; C-reactive protein; Fecal calprotectin; Inflammatory bowel disease; Primary sclerosing cholangitis
subject: 610 Medizin

description: Soluble CD163 (sCD163) is a selective marker of macrophages whose circulating levels have been found to be
induced in patients with active inflammatory bowel disease (IBD). Urinary proteins are emerging as non-invasive
diagnostic biomarkers, and here, sCD163 levels were measured in the urine of 18 controls and 63 patients with
IBD by enzyme-linked immunosorbent assay. Urinary sCD163 levels did, however, not differentiate IBD patients
from controls. Analysis of sCD163 in the serum of 51 of these patients did not show higher levels in IBD. Primary
sclerosing cholangitis (PSC) is often associated with IBD, and sCD163 was higher in the urine of the 21 patients
and in the serum of the 13 patients with PSC compared to patients with IBD. Of clinical relevance, urinary
sCD163 levels were higher in PSC patients compared to those with other chronic liver diseases (n = 16), while
serum sCD163 levels were comparable between the two groups. Serum sCD163 of IBD and PSC patients positively
correlated with serum C-reactive protein. Serum creatinine and glomerular filtration rate, surrogate
markers for renal function, did not significantly correlate with urinary or serum sCD163 levels in IBD or PSC
patients. Moreover, urinary sCD163 was not related to fecal calprotectin levels whereas serum sCD163 of IBD
patients showed a positive trend. PSC associated with IBD and PSC without underlying IBD had similar levels of
urinary sCD163 while serum sCD163 tended to be higher in the latter group. In PSC patients, urinary sCD163 did
not correlate with serum aminotransferase levels, gamma glutamyl transferase, alkaline phosphatase, bilirubin or
the Model for End Stage Liver Disease score. Ursodeoxycholic acid was prescribed to our PSC patients and fecal
levels of ursodeoxycholic acid and its conjugated forms were increased in PSC compared to IBD patients.
Otherwise, fecal bile acid levels of IBD and PSC patients were almost identical, and were not correlated with
urinary and serum sCD163 in PSC. In summary, our study identified urinary sCD163 as a potential biomarker for
PSC.
Additional file 1: Figure S1. of Downregulation of histone H2A and H2B pathways is associated with anthracycline sensitivity in breast cancer
Creators: name: Braunstein, Marsela
name: Liao, Linda
name: Lyttle, Nicola
name: Nazleen Lobo
name: Taylor, Karen
name: Krzyzanowski, Paul
name: Kalatskaya, Irina
name: Yao, Cindy
name: Stein, Lincoln
name: Boutros, Paul
name: Twelves, Christopher
name: Marcellus, Richard
name: Bartlett, John
name: Spears, Melanie
Publisher: name: Figshare
Year: 2016
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Clinical trial BR9601 information. (a) Schematic representation. (b) Patient information. Figure S2. Entire FI network from 61 consistently changing genes. Red circles = upregulated genes; green circles = downregulated genes; diamonds = linker genes. Figure S3. Heat maps of probes for the 61 consistently changing genes. Rows are labelled with gene symbol and microarray probe IDs. (a) Raw expression values. (b) Row scaled expression values. Figure S4. Combination of pre-processing methods. The most optimal method selected was at the top(high-rank). Figure S5. Sample-by-gene heat map. Rows represent patients and columns represent genes. Both were clustered using a ward clustering algorithm. Figure S6. FI network generated from the histone module. Circles = genes within the module, diamonds = linker genes. Figure S7. Multiplot showing scaled mRNA abundance levels for each gene. A treatment-by-marker interaction Cox proportional hazards model was fit for each gene, and results are visualized on the right with the squares representing the hazard ratios (HRs) and the ends of the segments representing the 95 % confidence intervals in log2 scale. Patients are sorted by DRFS events on the x-axis and genes by decreasing log2 HR on the y-axis. Figure S8. Flow cytometric analysis of HER2 in MCF7 cells. Yellow dotted line represents HER2- cell line (MDA-MB-231), while purple dotted line shows HER2 amplified cell line (SKBR3). Green and blue solid lines represent native and epirubicin-resistant MCF7 cell lines, respectively, and show they are negative for HER2 cell surface expression. Table S1. Doubling times (in hours) of breast cancer cell lines. Table S2 List of 61 common genes with consistent differential expression across all four cell lines. Table S3. Percentage reduction in gene expression compared with non-targeting siRNA control. Table S4. Drugs targeting epirubicin-resistant breast cancer cells. Table S5. List of primary antibodies. Table S6. List of histone module genes in the NanoString CodeSet. (PDF 1653 kb)
Additional file 16: Table S9. of Transcription analysis of neonicotinoid resistance in Mediterranean (MED) populations of B. tabaci reveal novel cytochrome P450s, but no nAChR mutations associated with the phenotype
Creators: name: Ilias, Aris
name: Lagnel, Jacques
name: Kapantaidaki, Despoina E.
name: Roditakis, Emmanouil
name: Tsigenopoulos, Costas S.
name: Vontas, John
name: Tsagkarakou, Anastasia
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 60506 Virology
subject: Computational Biology

description: List of primer used in real-time quantitative PCR. (DOCX 12 kb)
Previdenza, assistenza e tassazione delle pensioni transfrontaliere nella giurisprudenza tributaria di merito: il caso della Repubblica di San Marino
Creators: name: Greggi, Marco
Publisher: name: University of Ferrara
Year: 2024
Subjects: subject: Income Tax
subject: Tax law
subject: Tax system

description:  

The article addresses the issue of the taxation of cross-border pensions with particular reference to the case of the Republic of San Marino. The latter situation is interesting for the purposes of tax law, since the definition of social security in the tax treaty plays a decisive role in the tax liability. The judgment of the Court of Rimini constitutes an opportunity to revisit the issue of the distinction between welfare, social security, and pensions. The case concerns the application of a specific provision of the treaty against double taxation between Italy and San Marino (Article 18). The Commentary on the OECD Model Convention is used to clarify the scope of the term “pension” and related “social security” distinction. The conclusion of the analysis is that the broader the definition of “social security”, the greater the taxing power of the State of source (San Marino) over that of residence (Italy).
Additional file 11: Figure S1. of A machine learning strategy for predicting localization of post-translational modification sites in protein-protein interacting regions
Creators: name: Thammakorn Saethang
name: D. Payne
name: Yingyos Avihingsanon
name: Trairak Pisitkun
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: The number of sequences categorized by their source organisms. (PDF 837 kb)
Additional file 3: Figure S1. of Transcription analysis of neonicotinoid resistance in Mediterranean (MED) populations of B. tabaci reveal novel cytochrome P450s, but no nAChR mutations associated with the phenotype
Creators: name: Ilias, Aris
name: Lagnel, Jacques
name: Kapantaidaki, Despoina E.
name: Roditakis, Emmanouil
name: Tsigenopoulos, Costas S.
name: Vontas, John
name: Tsagkarakou, Anastasia
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Space Science
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 60506 Virology
subject: Computational Biology

description: GO analysis by ontology category (level 2). A. Molecular function (MF); B. Biological process (BP); C. Cellular component (CC). (A)The majority of the MF are involved in “catalytic activity” (41.25 %) and “binding” (39.93 %), followed by “transporter activity” (6.9 %). (B)The largest subcategories found in the BP group were “metabolic process” (17.7 %) and “cellular process” (17.7 %). The largest subcategory found in CC group was “cell” which comprised 43.4 % of the contigs followed by “organelle” (24.12 %). (PDF 50 kb)
Additional file 7: of The neurotranscriptome of the Aedes aegypti mosquito
Creators: name: Matthews, Benjamin
name: McBride, Carolyn
name: DeGennaro, Matthew
name: Despo, Orion
name: Vosshall, Leslie
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Shows an expansion of expression heat-maps from Figs. 5 to 7 showing gene names for individual rows. (PDF 463 kb)
Generative deep learning approaches for the design of dental restorations: A narrative review
Creators: name: Broll, Alexander
name: Goldhacker, Markus
name: Hahnel, Sebastian
name: Rosentritt, Martin
Publisher: name: Universität Regensburg
Year: 2024
Subjects: subject: Tooth reconstruction; Dental prosthesis design; Deep Learning; Digital dentistry
subject: 610 Medizin

description: Objectives: This study aims to explore and discuss recent advancements in tooth reconstruction utilizing deep
learning (DL) techniques. A review on new DL methodologies in partial and full tooth reconstruction is
conducted.
Data/Sources: PubMed, Google Scholar, and IEEE Xplore databases were searched for articles from 2003 to
2023.
Study selection: The review includes 9 articles published from 2018 to 2023. The selected articles showcase
novel DL approaches for tooth reconstruction, while those concentrating solely on the application or review of DL
methods are excluded. The review shows that data is acquired via intraoral scans or laboratory scans of dental
plaster models. Common data representations are depth maps, point clouds, and voxelized point clouds. Reconstructions
focus on single teeth, using data from adjacent teeth or the entire jaw. Some articles include
antagonist teeth data and features like occlusal grooves and gap distance. Primary network architectures include
Generative Adversarial Networks (GANs) and Transformers. Compared to conventional digital methods, DLbased
tooth reconstruction reports error rates approximately two times lower.
Conclusions: Generative DL models analyze dental datasets to reconstruct missing teeth by extracting insights
into patterns and structures. Through specialized application, these models reconstruct morphologically and
functionally sound dental structures, leveraging information from the existing teeth. The reported advancements
facilitate the feasibility of DL-based dental crown reconstruction. Beyond GANs and Transformers with point
clouds or voxels, recent studies indicate promising outcomes with diffusion-based architectures and innovative
data representations like wavelets for 3D shape completion and inference problems.
Clinical significance: Generative network architectures employed in the analysis and reconstruction of dental
structures demonstrate notable proficiency. The enhanced accuracy and efficiency of DL-based frameworks hold
the potential to enhance clinical outcomes and increase patient satisfaction. The reduced reconstruction times
and diminished requirement for manual intervention may lead to cost savings and improved accessibility of
dental services.
Morvihemia Haitlinger 1995
Creators: name: Halliday, R. B.
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Mesostigmata
Diarthrophallidae
Morvihemia

description: Morvihemia Haitlinger, 1995
Morvihemia Haitlinger, 1995: 93.
Type species Morvihemia ghizari Haitlinger, 1995: 93, by original designation.
Notes. Haitlinger (1995) spelled the name of the type species as Morvihemia ghizari four times, and as Morvihemia ghirazi once. I therefore interpret Morvihemia ghizari as the correct original spelling.
description: Published as part of Halliday, R. B., 2015, Catalogue of genera and their type species in the mite Suborder Uropodina (Acari: Mesostigmata), pp. 101-147 in Zootaxa 3972 (2) on page 121, DOI: 10.11646/zootaxa.3972.2.1, http://zenodo.org/record/232777
Additional file 13: Table S9. of A machine learning strategy for predicting localization of post-translational modification sites in protein-protein interacting regions
Creators: name: Thammakorn Saethang
name: D. Payne
name: Yingyos Avihingsanon
name: Trairak Pisitkun
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Definitions of true positives (TP), false positives (FP), true negatives (TN), and false negatives (FN) in this study. (DOCX 18 kb)
MOESM1 of Underweight body mass index is a risk factor of mortality in outpatients with nocturia in Japan
Creators: name: Negoro, Hiromitsu
name: Sugino, Yoshio
name: Nishizawa, Koji
name: Soda, Takeshi
name: Shimizu, Yosuke
name: Yoshimura, Kenichi
name: Ogawa, Osamu
name: Yoshimura, Koji
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer

description: Additional file 1. Charlson Comorbidity Score, Kaplanâ  Meier of all-cause mortality and analyses predicting death in nocturic patients with Charlson Comorbidity Score 0-2.
MPEC 2024-Y65 : 2024 YV1
Creators: name: Minor Planet Center Staff
Publisher: name: The Minor Planet Center
Year: 2024
Subjects: subject: Small Solar System bodies
valueUri: http://astrothesaurus.org/uat/1469
subject: 2024 YV1

description: The Minor Planet Electronic Circulars contain information on unusual minor planets, routine data on comets and natural satellites, and occasional editorial announcements.  They are published on behalf of Division F of the International Astronomical Union by the Minor Planet Center, Smithsonian Astrophysical Observatory, Cambridge, MA 02138, U.S.A.
Additional file 2: Table S2. of Investigation of proteome changes in osteoclastogenesis in low serum culture system using quantitative proteomics
Creators: name: Xiong, Qi
name: Lihai Zhang
name: Shaohua Zhan
name: Ge, Wei
name: Peifu Tang
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Inorganic Chemistry
subject: Science Policy

description: WikiPathways Enrichment Analysis of the Differentially Expressed Proteins. (DOCX 17 kb)
Additional file 13: of Cultivation of stable, reproducible microbial communities from different fecal donors using minibioreactor arrays (MBRAs)
Creators: name: Auchtung, Jennifer
name: Robinson, Catherine
name: Britton, Robert
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: Impact of sample preparation method on Bray-Curtis and Sorenson similarities in replicate samples. Table providing differences in Bray-Curtis and Sorenson similarities in replicate samples prepared with different extraction methods.
Additional file 12: Table S8. of A machine learning strategy for predicting localization of post-translational modification sites in protein-protein interacting regions
Creators: name: Thammakorn Saethang
name: D. Payne
name: Yingyos Avihingsanon
name: Trairak Pisitkun
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: 102 indices of AAindex1used in this study. (DOCX 25 kb)
Multidenturopoda Wisniewski & Hirschmann 1991
Creators: name: Halliday, R. B.
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Mesostigmata
Uropodidae
Multidenturopoda

description: Multidenturopoda Wiśniewski & Hirschmann, 1991
Multidenturopoda Wiśniewski & Hirschmann, 1991: 303.
Type species Multidenturopoda camerunis Wiśniewski & Hirschmann, 1991: 304, by original designation.
description: Published as part of Halliday, R. B., 2015, Catalogue of genera and their type species in the mite Suborder Uropodina (Acari: Mesostigmata), pp. 101-147 in Zootaxa 3972 (2) on page 121, DOI: 10.11646/zootaxa.3972.2.1, http://zenodo.org/record/232777
Additional file 1 of solveME: fast and reliable solution of nonlinear ME models
Creators: name: Yang, Laurence
name: Ma, Ding
name: Ebrahim, Ali
name: Lloyd, Colton
name: Saunders, Michael
name: Palsson, Bernhard
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology

description: Figure S1.(PDF 5 kb)
Nenteria Oudemans 1915
Creators: name: Halliday, R. B.
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Mesostigmata
Trematuridae
Nenteria

description: Nenteria Oudemans, 1915
Nenteria Oudemans, 1915: 185.
Type species Uropoda tropica Oudemans, 1905: 237, by original designation.
Notes. The genus name has been incorrectly spelled as Neuteria by some authors.
description: Published as part of Halliday, R. B., 2015, Catalogue of genera and their type species in the mite Suborder Uropodina (Acari: Mesostigmata), pp. 101-147 in Zootaxa 3972 (2) on page 121, DOI: 10.11646/zootaxa.3972.2.1, http://zenodo.org/record/232777
Essays in applied economics on firm performance
Creators: name: Hatalis, Maria
Publisher: name: No Publisher Supplied
Year: 2024

description: This dissertation consists of three essays that each offer an empirical investigation into unique drivers of firm performance. The first essay focuses on the use of carbon offsets and renewable energy certificates (RECs) by firms to mitigate their greenhouse gas emissions. It investigates the impact of these investments on firms' environmental scores, GHG emissions, and financial performance using data from firms in North America and Europe from 2012-2022. Employing a propensity score matching (PSM) as well as instrumental variables approach, the findings suggest that firms purchasing carbon offsets or RECs may engage in greenwashing behavior, as they exhibit higher environmental scores and GHG emissions. These purchases also lead to higher sales, profitability, and assets, while lowering Tobin’s Q for REC buyers. Additionally, the essay finds that a greater presence of women on the board does not lead to greater purchases of carbon offsets or RECs. The second essay focuses on the surge of acquisitions by firms from developing countries in developed countries over the last twenty years. It examines the impact of these acquisitions on the performance of target firms from developed countries during 2000-2019. Using a PSM and difference-in-differences (DID) approach, the findings reveal that acquisitions by developing countries do not have a favorable impact on the financial performance of target firms, showing a negative effect on sales growth, profitability, assets, and employment in the five-year post-acquisition period. The third essay explores the significance of firms’ environmental, social, and governmental (ESG) performance in M&A deals, specifically focusing on the effect of acquisitions on the sustainability performance of target firms in developed markets. Combining a PSM and event study DID approach, the analysis shows that target firms’ ESG improves after being acquired by firms with higher ESG ratings. Additionally, there is a positive long-term impact on the intangible assets of target firms for up to five years post-acquisition. These findings highlight the value of strong ESG practices as a transferable resource that can be learned and exchanged between acquirers and target firms to enhance their sustainability performance.
Additional file 4: of Phenotypic clustering: a novel method for microglial morphology analysis
Creators: name: Verdonk, Franck
name: Roux, Pascal
name: Flamant, Patricia
name: Fiette, Laurence
name: Bozza, Fernando
name: SĂŠbastien Simard
name: Lemaire, Marc
name: Benoit Plaud
name: Shorte, Spencer
name: Sharshar, Tarek
name: ChrĂŠtien, Fabrice
name: Danckaert, Anne
Publisher: name: Figshare
Year: 2016
Subjects: subject: Cell Biology
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology

description: Descriptive statistics for microglial cells by condition. (PDF 13 kb)
Neodiscopoma Vitzthum 1942
Creators: name: Halliday, R. B.
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Mesostigmata
Uropodidae
Neodiscopoma

description: Neodiscopoma Vitzthum, 1942
Neodiscopoma Vitzthum, 1942: 785.
Type species Uropoda splendida Kramer, 1882: 414, designated by Berlese, 1904c: 333.
Notes. Neodiscopoma Vitzthum, 1942 is a new name for Discopoma sensu Berlese, 1904c: 332, which should not be confused with Discopoma G. & R. Canestrini, 1882a: 925, in its original meaning. Neodiscopoma Vitzthum, 1942 is a junior objective synonym of Trachycilliba Berlese, 1903.
description: Published as part of Halliday, R. B., 2015, Catalogue of genera and their type species in the mite Suborder Uropodina (Acari: Mesostigmata), pp. 101-147 in Zootaxa 3972 (2) on page 122, DOI: 10.11646/zootaxa.3972.2.1, http://zenodo.org/record/232777
Additional file 11: of Cultivation of stable, reproducible microbial communities from different fecal donors using minibioreactor arrays (MBRAs)
Creators: name: Auchtung, Jennifer
name: Robinson, Catherine
name: Britton, Robert
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Fresh and frozen fecal samples form similar communities in MBRA. NMDS plot and ANOSIM, PERMANOVA, and ANOVA of Î˛-dispersion statistics of Bray-Curtis dissimilarities calculated from OTUs present in MBRA communities seeded with donor A2-fresh and donor A2-frozen fecal samples.
November 2024 Top 10 Read  Article for Wireless & Mobile Networks
Creators: name: Annamalai Senthilnathan, Anaamalaai
Publisher: name: Zenodo
Year: 2024

description: The International Journal of Wireless & Mobile Networks (IJWMN) is a bi monthly open access peer-reviewed journal that publishes articles which contribute new results in all areas of Wireless & Mobile Networks. The journal focuses on all technical and practical aspects of Wireless & Mobile Networks. The goal of this journal is to bring together researchers and practitioners from academia and industry to focus on advanced wireless & mobile networking concepts and establishing new collaborations in these areas.Authors are solicited to contribute to this journal by submitting articles that illustrate research results, projects, surveying works and industrial experiences that describe significant advances in Wireless and Mobile Networks.
Additional file 6: of Phenotypic clustering: a novel method for microglial morphology analysis
Creators: name: Verdonk, Franck
name: Roux, Pascal
name: Flamant, Patricia
name: Fiette, Laurence
name: Bozza, Fernando
name: SĂŠbastien Simard
name: Lemaire, Marc
name: Benoit Plaud
name: Shorte, Spencer
name: Sharshar, Tarek
name: ChrĂŠtien, Fabrice
name: Danckaert, Anne
Publisher: name: Figshare
Year: 2016
Subjects: subject: Cell Biology
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology

description: Descriptive statistics for amoeboid cells by condition. (PDF 53 kb)
Fistulising skin metastases in Crohn’s disease: a case report and review of the literature
Creators: name: Elger, Tanja
name: Loibl, Johanna
name: Buechler, Christa
name: Haferkamp, Sebastian
name: Werner, Jens M.
name: Drexler, Konstantin
name: Hohenleutner, Ulrich
name: Guelow, Karsten
name: Kunst, Claudia
name: Kandulski, Arne
name: Goeggelmann, Pia
name: Mueller, Martina
name: Tews, Hauke Christian
Publisher: name: Universität Regensburg
Year: 2024
Subjects: subject: Metastatic Crohn’s disease, Skin fistulae, Ustekinumab, Inflammatory bowel disease, Extraintestinal manifestation
subject: 610 Medizin

description: Background Metastatic Crohn’s disease is a rare disorder characterized by various granulomatous skin lesions
that occur independently of gastrointestinal tract involvement. However, currently there is no standardized care
or specific treatment. Therapeutic approaches include immunosuppressive agents, such as corticosteroids, azathioprine,
and monoclonal antibodies targeting inflammatory cytokines like tumor necrosis factor (TNF).
Case presentation We present a case of a 29-year-old western European woman with significant blind ending
abdominal subcutaneous fistulas and abscesses, who sought evaluation in the dermatology department. Histological
examination revealed multiple epithelioid cell granulomas. There was no evidence of infectious or rheumatologic
diseases such as sarcoidosis. The tentative diagnosis was metastatic Crohn’s disease, which was not related to an intestinal
manifestation of the disease. The patient responded to infliximab but had to discontinue it due to an allergic
reaction. Subsequent adalimumab treatment failed to induce clinical remission; thus, therapy was switched to ustekinumab,
resulting in a positive response. Written informed consent for publication of their clinical details and clinical
images was obtained from the patient.
For our study more than 1600 publications were screened for cases of metastatic Crohn’s disease on PubMed database.
59 case reports with 171 patients were included in the analysis and evaluated for localization, diagnostic
and therapeutic approaches, and complications and were summarized in this review.
Conclusion The successful ustekinumab treatment of a patient with metastatic Crohn’s disease underscores
the potential of this minimally investigated therapeutic option, highlighting the need for future treatment guidelines
given the increasing prevalence of such cases.
Additional file 1: Table S1. of Fracture risk and healthcare resource utilization and costs among osteoporosis patients with type 2 diabetes mellitus and without diabetes mellitus in Japan: retrospective analysis of a hospital claims database
Creators: name: Sato, Masayo
name: Wenyu Ye
name: Sugihara, Tomoko
name: Isaka, Yoshitaka
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy
subject: Hematology

description: Clinical fractures (ICD-10 codes) included in the study. Table S2. Traumatic fractures (ICD-10 codes) excluded from the study. (DOCX 14 kb)
MOESM1 of Expression of ustR and the Golgi protease KexB are required for ustiloxin B biosynthesis in Aspergillus oryzae
Creators: name: Yoshimi, Akira
name: Myco Umemura
name: Nagano, Nozomi
name: Koike, Hideaki
name: Machida, Masayuki
name: Keietsu Abe
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Additional file 1:Table S1. PCR primers used in this study. Figure S1. Expression of the genes of the cluster for ustiloxin B biosynthesis in A. oryzae wild-type (RIB40) and ustR EX (G101 and G301) strains grown for 1 day. Figure S2. Expression of the genes of the cluster for ustiloxin B biosynthesis in A. oryzae wild-type (RIB40) and ustR EX (G101 and G301) strains grown for 3 day. Figure S3. Expression of the genes of the cluster for ustiloxin B biosynthesis in A. oryzae wild-type (RIB40) and ustR EX (G101 and G301) strains grown for 7 day. Figure S4. Expression of the genes of the cluster for ustiloxin B biosynthesis in the A. oryzae strains ∆kexB, ustR EX/∆kexB, NSlD-∆P10 (∆P10), and ustR EX/∆P10.
Are large language models valid tools for patient information on lumbar disc herniation? The spine surgeons' perspective
Creators: name: Lang, Siegmund
name: Vitale, Jacopo
name: Fekete, Tamás F.
name: Haschtmann, Daniel
name: Reitmeir, Raluca
name: Ropelato, Mario
name: Puhakka, Jani
name: Galbusera, Fabio
name: Loibl, Markus
Publisher: name: Universität Regensburg
Year: 2024
Subjects: subject: Lumbar disc herniation; Patient education; Large language models; ChatGPT; Google bard; AI evaluation
subject: 610 Medizin

description: Introduction: Generative AI is revolutionizing patient education in healthcare, particularly through chatbots that
offer personalized, clear medical information. Reliability and accuracy are vital in AI-driven patient education.
Research question: How effective are Large Language Models (LLM), such as ChatGPT and Google Bard, in
delivering accurate and understandable patient education on lumbar disc herniation?
Material and methods: Ten Frequently Asked Questions about lumbar disc herniation were selected from 133
questions and were submitted to three LLMs. Six experienced spine surgeons rated the responses on a scale from
“excellent” to “unsatisfactory,” and evaluated the answers for exhaustiveness, clarity, empathy, and length.
Statistical analysis involved Fleiss Kappa, Chi-square, and Friedman tests.
Results: Out of the responses, 27.2% were excellent, 43.9% satisfactory with minimal clarification, 18.3%
satisfactory with moderate clarification, and 10.6% unsatisfactory. There were no significant differences in
overall ratings among the LLMs (p = 0.90); however, inter-rater reliability was not achieved, and large differences
among raters were detected in the distribution of answer frequencies. Overall, ratings varied among the 10
answers (p = 0.043). The average ratings for exhaustiveness, clarity, empathy, and length were above 3.5/5.
Discussion and conclusion: LLMs show potential in patient education for lumbar spine surgery, with generally
positive feedback from evaluators. The new EU AI Act, enforcing strict regulation on AI systems, highlights the
need for rigorous oversight in medical contexts. In the current study, the variability in evaluations and occasional
inaccuracies underline the need for continuous improvement. Future research should involve more advanced
models to enhance patient-physician communication.
Additional file 4: Table S5. of A machine learning strategy for predicting localization of post-translational modification sites in protein-protein interacting regions
Creators: name: Thammakorn Saethang
name: D. Payne
name: Yingyos Avihingsanon
name: Trairak Pisitkun
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 60506 Virology
subject: Computational Biology

description: Optimized set of indices for ubiquitylation dataset. (DOCX 26 kb)
Motion activated animal feeder
Creators: name: Martin, Meghan
name: Adams, Zachary
Publisher: name: Unknown
Year: 2014

description: The purpose of this project was to develop a motion sensor that works directly with Smart Animal System's Pet Tutor. The goal of this project was to design a motion detector system that can accurately detect when an animal walks in front of the Pet Tutor feeder that could be commercially advertised. This project involves the use of programming and interfacing with Ardiuno, Bluetooth technology such as the LightBlue bean and passive infrared sensors. A test motion detector device was developed and has been proved to work, but not without issues. Much of the problems that were faced happened in the beginning stages of the project. Such as not having the correct model of Mac computer to be able to communicate with the LightBlue Bean, interfacing between Arduino and the LightBlue Bean, and the battery life of the LightBlue Bean.
Additional file 2: of Cultivation of stable, reproducible microbial communities from different fecal donors using minibioreactor arrays (MBRAs)
Creators: name: Auchtung, Jennifer
name: Robinson, Catherine
name: Britton, Robert
Publisher: name: Figshare
Year: 2015
Subjects: subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Computational Biology

description: Stabilization of MBRA communities. Plot of Average Bray-Curtis (BC) dissimilarities on days 8-21 across replicate reactors.
Ca2+/calmodulin‐dependent kinase IIδC‐induced chronic heart failure does not depend on sarcoplasmic reticulum Ca2+ leak
Creators: name: Dewenter, Matthias
name: Seitz, Tilmann
name: Steinbrecher, Julia H.
name: Westenbrink, B. Daan
name: Ling, Haiyun
name: Lehnart, Stephan E.
name: Wehrens, Xander H. T.
name: Backs, Johannes
name: Brown, Joan Heller
name: Maier, Lars S.
name: Neef, Stefan
Publisher: name: Universität Regensburg
Year: 2024
Subjects: subject: Ca2+/calmodulin-dependent kinase II; Ryanodine receptor 2; SR Ca2+ leak; Heart failure
subject: 610 Medizin

description: Aims
Hyperactivity of Ca2+/calmodulin-dependent protein kinase II (CaMKII) has emerged as a central cause of pathologic remodelling in heart failure. It has been suggested that CaMKII-induced hyperphosphorylation of the ryanodine receptor 2 (RyR2) and consequently increased diastolic Ca2+ leak from the sarcoplasmic reticulum (SR) is a crucial mechanism by which increased CaMKII activity leads to contractile dysfunction. We aim to evaluate the relevance of CaMKII-dependent RyR2 phosphorylation for CaMKII-induced heart failure development in vivo.
Methods and results
We crossbred CaMKIIδC overexpressing [transgenic (TG)] mice with RyR2-S2814A knock-in mice that are resistant to CaMKII-dependent RyR2 phosphorylation. Ca2+-spark measurements on isolated ventricular myocytes confirmed the severe diastolic SR Ca2+ leak previously reported in CaMKIIδC TG [4.65 ± 0.73 mF/F0 vs. 1.88 ± 0.30 mF/F0 in wild type (WT)]. Crossing in the S2814A mutation completely prevented SR Ca2+-leak induction in the CaMKIIδC TG, both regarding Ca2+-spark size and frequency, demonstrating that the CaMKIIδC-induced SR Ca2+ leak entirely depends on the CaMKII-specific RyR2-S2814 phosphorylation. Yet, the RyR2-S2814A mutation did not affect the massive contractile dysfunction (ejection fraction = 12.17 ± 2.05% vs. 45.15 ± 3.46% in WT), cardiac hypertrophy (heart weight/tibia length = 24.84 ± 3.00 vs. 9.81 ± 0.50 mg/mm in WT), or severe premature mortality (median survival of 12 weeks) associated with cardiac CaMKIIδC overexpression. In the face of a prevented SR Ca2+ leak, the phosphorylation status of other critical CaMKII downstream targets that can drive heart failure, including transcriptional regulator histone deacetylase 4, as well as markers of pathological gene expression including Xirp2, Il6, and Col1a1, was equally increased in hearts from CaMKIIδC TG on a RyR WT and S2814A background.
Conclusions
S2814 phosphoresistance of RyR2 prevents the CaMKII-dependent SR Ca2+ leak induction but does not prevent the cardiomyopathic phenotype caused by enhanced CaMKIIδC activity. Our data indicate that additional mechanisms—independent of SR Ca2+ leak—are critical for the maladaptive effects of chronically increased CaMKIIδC activity with respect to heart failure.