cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
On mechanisms of electromechanophysiological interactions between the components of nerve signals in axons
Creators: name: Engelbrecht, Jüri
name: Tamm, Kert
name: Peets, Tanel
Publisher: name: arXiv
Year: 2019
Subjects: subject: Biological Physics (physics.bio-ph)
subject: FOS: Physical sciences

description: Recent studies have revealed the complex structure of nerve signals in axons. There is experimental evidence that the propagation of an electrical signal (action potential) is accompanied by mechanical and thermal effects. In this paper, first an overview is presented on experimental results and possible mechanisms of electromechanophysiological couplings which govern the signal formation in axons. This forms a basis for building up a mathematical model describing an ensemble of waves. Three physical mechanisms responsible for coupling are (i) electric-lipid bi-layer interaction resulting in the mechanical wave in biomembrane; (ii) electric-fluid interaction resulting in the mechanical wave in the axoplasm; (iii) electric-fluid interaction resulting in the temperature change in axoplasm. The influence of possible changes in variables which could have a role for interactions are analysed and the concept of internal variables introduced for describing the endothermic processes. The previously proposed mathematical model is modified reflecting the possible physical explanation of these interactions.
description: Submission updated to correct few typos and to remove one reference being present twice
Phytocoris (Eckerleinius) filomele Linnavuori 2000
Creators: name: Linnavuori, Rauno E.
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Miridae
Phytocoris
Phytocoris filomele

description: Phytocoris (Eckerleinius) filomele Linnavuori, 2000
 Material examined. FARS: Fasa – Mianjangal, 2 specimens, 18.–19.vi.2006. LORESTAN: near Khoram Abad, 5 specimens, 5.–6.v.2005.
 Comments. At light in gardens on mountain slopes. Endemic to Iran.
description: Published as part of Linnavuori, Rauno E., 2009, Studies on the Nepomorpha, Gerromorpha, Leptopodomorpha, and Miridae excluding Phylini (Hemiptera: Heteroptera) of Khuzestan and the adjacent provinces of Iran, pp. 1-32 in Acta Entomologica Musei Nationalis Pragae 49 (1) on page 22, DOI: 10.5281/zenodo.5318851
Baryogenesis via Density Fluctuations with a Second Order Electroweak Phase Transition
Creators: name: Layek, Biswanath
name: Sanyal, Soma
name: Srivastava, Ajit M.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Astrophysics (astro-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We consider the presence of cosmic string induced density fluctuations in the universe at temperatures below the electroweak phase transition temperature. Resulting temperature fluctuations can restore the electroweak symmetry locally, depending on the amplitude of fluctuations and the background temperature. The symmetry will be spontaneously broken again in a given fluctuation region as the temperature drops there (for fluctuations with length scales smaller than the horizon), resulting in the production of baryon asymmetry. The time scale of the transition will be governed by the wavelength of fluctuation and, hence, can be much smaller than the Hubble time. This leads to strong enhancement in the production of baryon asymmetry for a second order electroweak phase transition as compared to the case when transition happens due to the cooling of the universe via expansion. For a two-Higgs extension of the Standard Model (with appropriate CP violation), we show that one can get the required baryon to entropy ratio if fluctuations propagate without getting significantly damped. If fluctuations are damped rapidly, then a volume factor suppresses the baryon production. Still, the short scale of the fluctuation leads to enhancement of the baryon to entropy ratio by at least 3 - 4 orders of magnitude compared to the conventional case of second order transition where the cooling happens due to expansion of the universe.
description: 17 pages,1 figure. Significantly modified version. The case of inflationary fluctuations for second order transition has been taken out. New estimates included for the cosmic string case if density fluctuations decay rapidly
Measuring Double Parton Distributions in Nucleons at Proton-Nucleus Colliders
Creators: name: Strikman, M.
name: Treleani, D.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We predict a strong enhancement of multijet production in proton-nucleus collisions at collider energies, as compared to a naive expectation of a cross section $\propto A$. The study of the process would allow to measure, for the first time, the double parton distribution functions in a nucleon in a model independent way and hence to study both the longitudinal and the transverse correlations of partons.
description: 12 pages, 2 figures
Research Software Engineering within the NFDI (INFRA-WG-RSE)
Creators: name: Flemisch, Bernd
name: Hammitzsch, Martin
name: Thiery, Florian
Publisher: name: Zenodo
Year: 2025

description: The presentation Research Software Engineering within the NFDI (INFRA-WG-RSE) was presented at the Base4NFDI User Conference 2024 (https://events.gwdg.de/event/658/) in the Further fields Session.
Phytocoris (Eriamiris) brevidens Linnavuori 2000
Creators: name: Linnavuori, Rauno E.
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Miridae
Phytocoris
Phytocoris brevidens

description: Phytocoris (Eriamiris) brevidens Linnavuori, 2000
 Material examined. MARKAZI: Tafresh, 1 specimen, 7.–8.vi.2006.
 Comments. At light in gardens. The type from Khorasan was found on Artemisia in a hilly steppe. Endemic to Iran.
description: Published as part of Linnavuori, Rauno E., 2009, Studies on the Nepomorpha, Gerromorpha, Leptopodomorpha, and Miridae excluding Phylini (Hemiptera: Heteroptera) of Khuzestan and the adjacent provinces of Iran, pp. 1-32 in Acta Entomologica Musei Nationalis Pragae 49 (1) on page 22, DOI: 10.5281/zenodo.5318851
Resummation of transverse momentum and mass logarithms in DIS heavy-quark production
Creators: name: Nadolsky, P. M.
name: Kidonakis, N.
name: Olness, F. I.
name: Yuan, C. -P.
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Differential distributions for heavy quark production depend on the heavy quark mass and other momentum scales, which can yield additional large logarithms and inhibit accurate predictions. Logarithms involving the heavy quark mass can be summed in heavy quark parton distribution functions in the ACOT factorization scheme. A second class of logarithms involving the heavy-quark transverse momentum can be summed using an extension of Collins-Soper-Sterman (CSS) formalism. We perform a systematic summation of logarithms of both types, thereby obtaining an accurate description of heavy-quark differential distributions at all energies. Our method essentially combines the ACOT and CSS approaches. As an example, we present angular distributions for bottom quarks produced in parity-conserving events at large momentum transfers Q at the ep collider HERA.
description: 22 pages, 6 figures; minor changes
Learning-Based Cost Functions for 3D and 4D Multi-Surface Multi-Object Segmentation of Knee MRI: Data from the Osteoarthritis Initiative
Creators: name: Kashyap, Satyananda
name: Zhang, Honghai
name: Rao, Karan
name: Sonka, Milan
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: A fully automated knee MRI segmentation method to study osteoarthritis (OA) was developed using a novel hierarchical set of random forests (RF) classifiers to learn the appearance of cartilage regions and their boundaries. A neighborhood approximation forest is used first to provide contextual feature to the second-level RF classifier that also considers local features and produces location-specific costs for the layered optimal graph image segmentation of multiple objects and surfaces (LOGISMOS) framework. Double echo steady state (DESS) MRIs used in this work originated from the Osteoarthritis Initiative (OAI) study. Trained on 34 MRIs with varying degrees of OA, the performance of the learning-based method tested on 108 MRIs showed a significant reduction in segmentation errors (\emph{p}$
description: IEEE Transactions in Medical Imaging, 11 pages
Aging in ferromagnetic systems at criticality near four dimensions
Creators: name: Calabrese, Pasquale
name: Gambassi, Andrea
Publisher: name: arXiv
Year: 2002
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We study the off-equilibrium response and correlation functions and the corresponding fluctuation-dissipation ratio for a purely dissipative relaxation of an O(N) symmetric vector model (Model A) below its upper critical dimension. The scaling behavior of these quantities is analyzed and the associated universal functions are determined at first order in epsilon expansion in the high-temperature phase and at criticality. A non trivial limit of the fluctuation-dissipation ratio is found in the aging regime.
description: 11 pages, 1 figure
Phytocoris (Eriamiris) laios Linnavuori 1974
Creators: name: Linnavuori, Rauno E.
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Miridae
Phytocoris
Phytocoris laios

description: Phytocoris (Eriamiris) laios Linnavuori, 1974
 Material examined. MARKAZI: Saveh, 1 specimen, 8.–9.vi.2003.
 Comments. At light in gardens. Endemic to Iran.
description: Published as part of Linnavuori, Rauno E., 2009, Studies on the Nepomorpha, Gerromorpha, Leptopodomorpha, and Miridae excluding Phylini (Hemiptera: Heteroptera) of Khuzestan and the adjacent provinces of Iran, pp. 1-32 in Acta Entomologica Musei Nationalis Pragae 49 (1) on page 22, DOI: 10.5281/zenodo.5318851
On the EDM Cancellations in D-brane models
Creators: name: Abel, S.
name: Khalil, S.
name: Lebedev, O.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We analyze the possibility of simultaneous electron, neutron, and mercury electric dipole moment (EDM) cancellations in the mSUGRA and D--brane models. We find that the mercury EDM constraint practically rules out the cancellation scenario in D-brane models whereas in the context of mSUGRA it is still allowed with some fine-tuning.
description: 10 pages, to appear in Phys. Rev. Lett
Phytocoris (Eriamiris) tibullus Linnavuori 2000
Creators: name: Linnavuori, Rauno E.
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Miridae
Phytocoris
Phytocoris tibullus

description: Phytocoris (Eriamiris) tibullus Linnavuori, 2000
 Material examined. BUSHEHR: near Bandar-e-Genaveh, 21 specimens, 23.–24.iv.2007.
 Comments. At light in hilly coastal area of the Persian Gulf with Acacia and rich herbaceous vegetation. Endemic to Iran.
description: Published as part of Linnavuori, Rauno E., 2009, Studies on the Nepomorpha, Gerromorpha, Leptopodomorpha, and Miridae excluding Phylini (Hemiptera: Heteroptera) of Khuzestan and the adjacent provinces of Iran, pp. 1-32 in Acta Entomologica Musei Nationalis Pragae 49 (1) on page 22, DOI: 10.5281/zenodo.5318851
Duality Invariant Cosmology to all Orders in $α'$
Creators: name: Hohm, Olaf
name: Zwiebach, Barton
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: While the classification of $α'$ corrections of string inspired effective theories remains an unsolved problem, we show how to classify duality invariant $α'$ corrections for purely time-dependent (cosmological) backgrounds. We determine the most general duality invariant theory to all orders in $α'$ for the metric, $b$-field, and dilaton. The resulting Friedmann equations are studied when the spatial metric is a time-dependent scale factor times the Euclidean metric and the $b$-field vanishes. These equations can be integrated perturbatively to any order in $α'$. We construct non-perturbative solutions and display duality invariant theories featuring string-frame de Sitter vacua.
description: 34 pages, v2: refs. added
Thorellius tekuani González-Santillán & Prendini, 2018, sp. nov.
Creators: name: González-Santillán, Edmundo
name: Prendini, Lorenzo
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Scorpiones
Vaejovidae
Thorellius
Thorellius tekuani

description: Thorellius tekuani, sp. nov.   Figures 3, 6B, 7D, 8E, 9E, 10E, 11E, 13F–H,
description: Published as part of González-Santillán, Edmundo & Prendini, Lorenzo, 2018, Systematic Revision Of The North American Syntropine Vaejovid Scorpion Genera Balsateres, Kuarapu, And Thorellius, With Descriptions Of Three New Species, pp. 1 in Bulletin of the American Museum of Natural History 2018 (420) on page 47, DOI: 10.1206/0003-0090-420.1.1, http://zenodo.org/record/6499473
Additional file 1 of The MultiOmics Explainer: explaining omics results in the context of a pathway/genome database
Creators: name: Paley, Suzanne
name: Karp, Peter
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Supplementary Material. (PDF 79 kb).
Eta-eta' mixing in U(3) chiral perturbation theory
Creators: name: Beisert, Niklas
name: Borasoy, Bugra
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We investigate eta-eta' mixing in infrared regularized U(3) chiral perturbation theory by calculating the eta and eta' masses up to one-loop order. From this analysis it becomes obvious that even at leading order eta-eta' mixing does not obey the usually assumed one-mixing angle scheme if large N_c counting rules are not employed.
description: 22 pages
Additional file 1: of Hyperuricemia and smoking in young adults suspected of coronary artery disease ≤ 35 years of age: a hospital-based observational study
Creators: name: Lv, Sai
name: Liu, Wei
name: Zhou, Yujie
name: Liu, Yuyang
name: Shi, Dongmei
name: Zhao, Yingxin
name: Liu, Xiaoli
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Science Policy
subject: Virology

description: Table S1. Interaction effect of hyperuricemia and cigarrete smoking on CAD. Table S2. Relationship between hyperuricemia/uric acid and smoking in the special group. Figure S1. Flowchart of the study. (DOCX 546 kb)
Additional file 2: of Co-morbidity of progressive supranuclear palsy and amyotrophic lateral sclerosis: a clinical-pathological case report
Creators: name: Fujita, Koji
name: Tomoyasu Matsubara
name: Miyamoto, Ryosuke
name: Sumikura, Hiroyuki
name: Takeuchi, Toshiaki
name: Saladini, Keiko Maruyama
name: Toshitaka Kawarai
name: Nodera, Hiroyuki
name: Fukashi Udaka
name: Kodai Kume
name: Morino, Hiroyuki
name: Kawakami, Hideshi
name: Hasegawa, Masato
name: Kaji, Ryuji
name: Murayama, Shigeo
name: Yuishin Izumi
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Medicine
subject: Pharmacology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 60506 Virology
subject: FOS: Biological sciences
subject: Computational Biology

description: Methods. (DOCX 22 kb)
CO~($J=1-0$) Observations toward Filamentary Molecular Clouds in the Galactic Region with $l = [169\arcdeg.75, 174\arcdeg.75], b = [-0\arcdeg.75, 0\arcdeg.5]$
Creators: name: Xiong, Fang
name: Chen, Xuepeng
name: Zhang, Qizhou
name: Yang, Ji
name: Fang, Min
name: Zhang, Miaomiao
name: Guo, Weihua
name: Sun, Li
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We present observations of the CO isotopologues ($^{12}$CO, $^{13}$CO, and C$^{18}$O) toward the Galactic region with $169\arcdeg.75 \leqslant l \leqslant 174\arcdeg.75$ and $-0\arcdeg.75 \leqslant b \leqslant 0\arcdeg.5$, using the Purple Mountain Observatory 13.7~m millimeter-wavelength telescope. Based on the $^{13}$CO~($J = 1-0$) data, we find five molecular clouds within the velocity range between $-$25 and 8~km~s$^{-1}$ that are all characterized by conspicuous filamentary structures. We have identified eight filaments with a length of 6.38--28.45~pc, a mean H$_2$ column density of 0.70$\times$10$^{21}$--6.53$\times$10$^{21}$~cm$^{-2}$, and a line mass of 20.24--161.91~$M_\sun$ pc$^{-1}$, assuming a distance of $\sim$1.7~kpc. Gaussian fittings to the inner parts of the radial density profiles lead to a mean FWHM width of 1.13$\pm$0.01~pc. The velocity structures of most filaments present continuous distributions with slight velocity gradients. We find that turbulence is the dominant internal pressure to support the fragmentation of filaments instead of thermal pressure. Most filaments have virial parameters smaller than 2; thus, they are gravitationally bound. Four filaments have an LTE line mass close to the virial line mass. We further extract dense clumps using the $^{13}$CO data and find that 64$\%$ of the clumps are associated with the filaments. According to the complementary IR data, most filaments have associated Class~II young stellar objects. Class~I objects are mainly found to be located in the filaments with a virial parameter close to 1. Within two virialized filaments, $^{12}$CO outflows have been detected, indicating ongoing star-forming activity therein.
description: 50 pages, 25 figures, 5 tables. Published by Astrophysical Journal
Additional file 2 of The efficacy and safety of atogepant for the prophylactic treatment of migraine: evidence from randomized controlled trials
Creators: name: Tao, Xinyu
name: Yan, Zeya
name: Meng, Jiahao
name: Wang, Wei
name: Dai, Qiling
name: Zhou, Qiufeng
name: Wang, Zhifeng
name: Wang, Zhong
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 2.
Heavy quark production in $γγ$ collisions
Creators: name: Chyla, Jiri
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Current theoretical framework for the calculation of heavy quark production in $γγ$ collisions is reviewed. The importance of including direct photon contributions up to the order $α^2α_s^2$ and of the proper choice of renormalization and factorization scales in the evaluation of $σ(γγ\to Q\bar{Q})$ is emphasized.
description: 8 pages, ws macro attached, 2 eps figures
Phytocoris (Ktenocoris) insignis Reuter 1876
Creators: name: Linnavuori, Rauno E.
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Miridae
Phytocoris
Phytocoris insignis

description: Phytocoris (Ktenocoris) insignis Reuter, 1876
 Material examined. WEST AZERBAIJAN: Nushin Sar near Urumiyeh, 3 specimens, 25.–26.vii.2006; 25 km S of Urumiyeh, 1 specimen, 17.vi.2005.
 Comments. At light in gardens near the shores of Lake Urumiyeh. West-Palaearctic, extending to Central Asia.
description: Published as part of Linnavuori, Rauno E., 2009, Studies on the Nepomorpha, Gerromorpha, Leptopodomorpha, and Miridae excluding Phylini (Hemiptera: Heteroptera) of Khuzestan and the adjacent provinces of Iran, pp. 1-32 in Acta Entomologica Musei Nationalis Pragae 49 (1) on page 22, DOI: 10.5281/zenodo.5318851
Researcher Bias: McGilChrist and Mannheim -Six Specific Problem Areas due to the materialist methodology's "rigid adherence" to the quantification method
Creators: name: Peck Jr, Charles E.
Publisher: name: Knowledge Commons
Year: 2025
Subjects: subject: United States. General Accounting Office. Program Evaluation and Methodology Division
subject: Science and Public Policy Studies Group
subject: Australian Association for the Study of Religions
subject: Council on Religion and International Affairs
subject: Action research--Methodology
subject: Aesthetics--Methodology
subject: Philippine Normal College
subject: Philippine literature
subject: Central Philippine University
subject: Philippine Normal University
subject: Movement of Spiritual Inner Awareness
subject: Spiritual Council of Churches
subject: National Spiritual Science Center
subject: Jesuit Center for Spiritual Growth
subject: Fellowship for Spiritual Understanding

description: The Dark Side of Social Sciences:  Researcher Bias: Errors, Omissions and Methodology Flaws – Six Problems due to the materialist extreme methodology
The essay argues that a pervasive researcher bias rooted in materialist ideology has led to several critical issues in the social sciences. A number of "errors and omissions" have emerged within the realm of social sciences, These biases have led to several critical issues: As Claudia Nielsen pointed out, the psychiatrist McGilChrist stated unequivocally that "The scope of inquiry and understanding of the Materialist Doctrine with its rigid adherence to the actually arbitrary principle of quantification and over-emphasis on physiological characteristics is severely restricted and limited in the analyses that can be performed." Seven Problem Areas
1.	marginalization of symbolism in academic research due to a focus on quantification and empirical evidence.
2.	Materialist fallacy-maladaptive stereotype that "All spirituality is intangible and unreal"
3.	Allport's 1927 false premise "There is no psycho9lgoy of groups"
4.	Kay Deaux: Social Psychology's Emphasis on Experimenter-Created Social Groups
5.	The academic Abstraction Of Free Will leads to a lapse of morals
6.	Geertz's outmoded definition of religion overlooks crucial aspects like community, identity, and spiritual beliefs - and the need for a more holistic approach to understanding human behavior that acknowledges the importance of symbolism, spirituality, and social context.
Additional file 1: of Prevalence of depressive symptoms among older adults who reported medical cost as a barrier to seeking health care: findings from a nationally representative sample
Creators: name: Cheruvu, Vinay
name: Chiyaka, Edward
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Computational Biology

description: Table S1. Estimated Odds Ratio (95% CI) for Current Depressive Symptoms (PHQ-8 Score ≥ 10) among Adults Aged 65 and Older (n = 24,018). (DOCX 20 kb)
Phytocoris (Ktenocoris) ulmi
Creators: name: Linnavuori, Rauno E.
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Miridae
Phytocoris
Phytocoris ulmi

description: Phytocoris (Ktenocoris) ulmi (Linnaeus, 1758)
 Material examined. KURDESTAN: near Marivan, 2 specimens, 12.–13.vi.2005.
 Comments. On deciduous trees on mountain slopes. West-Palaearctic.
description: Published as part of Linnavuori, Rauno E., 2009, Studies on the Nepomorpha, Gerromorpha, Leptopodomorpha, and Miridae excluding Phylini (Hemiptera: Heteroptera) of Khuzestan and the adjacent provinces of Iran, pp. 1-32 in Acta Entomologica Musei Nationalis Pragae 49 (1) on page 22, DOI: 10.5281/zenodo.5318851
Saturation and Universality in QCD at small x
Creators: name: Iancu, Edmond
name: McLerran, Larry
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We find approximate solutions to the renormalization group equation which governs the quantum evolution of the effective theory for the Color Glass Condensate. This is a functional Fokker-Planck equation which generates in particular the non-linear evolution equations previously derived by Balitsky and Kovchegov within perturbative QCD. In the limit where the transverse momentum of the external probe is large compared to the saturation momentum, our approximations yield the Gaussian Ansatz for the effective action of the McLerran-Venugopalan model. In the opposite limit, of a small external momentum, we find that the effective theory is governed by a scale-invariant universal action which has the correct properties to describe gluon saturation.
description: 14 pages; further clarifications and new material in the discussion of the saturation regime
Automated Segmentation of Knee MRI Using Hierarchical Classifiers and Just Enough Interaction Based Learning: Data from Osteoarthritis Initiative
Creators: name: Kashyap, Satyananda
name: Oguz, Ipek
name: Zhang, Honghai
name: Sonka, Milan
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: We present a fully automated learning-based approach for segmenting knee cartilage in the presence of osteoarthritis (OA). The algorithm employs a hierarchical set of two random forest classifiers. The first is a neighborhood approximation forest, the output probability map of which is utilized as a feature set for the second random forest (RF) classifier. The output probabilities of the hierarchical approach are used as cost functions in a Layered Optimal Graph Segmentation of Multiple Objects and Surfaces (LOGISMOS). In this work, we highlight a novel post-processing interaction called just-enough interaction (JEI) which enables quick and accurate generation of a large set of training examples. Disjoint sets of 15 and 13 subjects were used for training and tested on another disjoint set of 53 knee datasets. All images were acquired using a double echo steady state (DESS) MRI sequence and are from the osteoarthritis initiative (OAI) database. Segmentation performance using the learning-based cost function showed significant reduction in segmentation errors ($p< 0.05$) in comparison with conventional gradient-based cost functions.
description: KEYWORDS: Graph based segmentation; Just enough interaction; LOGISMOS; Neighborhood approximation forests; Osteoarthritis; Random forest classifier; knee MRI PMID: 28626842 PMCID: PMC5471813
Sum rules for strange form factors and flavor singlet axial charges
Creators: name: Hong, Soon-Tae
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: In chiral models with SU(3) group structure, strange form factors of baryon octet are evaluated by constructing their sum rules to yield theoretical predictions comparable to the recent experimental data of SAMPLE Collaboration. We also study sum rules for the flavor singlet axial currents for the EMC experiment in a modified quark model.
description: 15 pages, revised with references added
High accuracy theoretical investigations of CaF, SrF, and BaF and implications for laser-cooling
Creators: name: Hao, Yongliang
name: Pašteka, Lukaš F.
name: Visscher, Lucas
name: collaboration, the NL-eEDM
name: :
name: Aggarwal, Parul
name: Bethlem, Hendrick L.
name: Boeschoten, Alexander
name: Borschevsky, Anastasia
name: Denis, Malika
name: Esajas, Kevin
name: Hoekstra, Steven
name: Jungmann, Klaus
name: Marshall, Virginia R.
name: Meijknecht, Thomas B.
name: Mooij, Maarten C.
name: Timmermans, Rob G. E.
name: Touwen, Anno
name: Ubachs, Wim
name: Willmann, Lorenz
name: Yin, Yanning
name: Zapara, Artem
Publisher: name: arXiv
Year: 2019
Subjects: subject: Atomic Physics (physics.atom-ph)
subject: Optics (physics.optics)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The NL-eEDM collaboration is building an experimental setup to search for the permanent electric dipole moment of the electron in a slow beam of cold barium fluoride molecules [Eur. Phys. J. D, 72, 197 (2018)]. Knowledge of molecular properties of BaF is thus needed to plan the measurements and in particular to determine an optimal laser-cooling scheme. Accurate and reliable theoretical predictions of these properties require incorporation of both high-order correlation and relativistic effects in the calculations. In this work theoretical investigations of the ground and the lowest excited states of BaF and its lighter homologues, CaF and SrF, are carried out in the framework of the relativistic Fock-space coupled cluster (FSCC) and multireference configuration interaction (MRCI) methods. Using the calculated molecular properties, we determine the Franck-Condon factors (FCFs) for the $A^2Π_{1/2} \rightarrow X^2Σ^{+}_{1/2}$ transition, which was successfully used for cooling CaF and SrF and is now considered for BaF. For all three species, the FCFs are found to be highly diagonal. Calculations are also performed for the $B^2Σ^{+}_{1/2} \rightarrow X^2Σ^{+}_{1/2}$ transition recently exploited for laser-cooling of CaF; it is shown that this transition is not suitable for laser-cooling of BaF, due to the non-diagonal nature of the FCFs in this system. Special attention is given to the properties of the $A'^2Δ$ state, which in the case of BaF causes a leak channel, in contrast to CaF and SrF species where this state is energetically above the excited states used in laser-cooling. We also present the dipole moments of the ground and the excited states of the three molecules and the transition dipole moments (TDMs) between the different states.
description: Minor changes; The following article has been submitted to the Journal of Chemical Physics. After it is published, it will be found at https://publishing.aip.org/resources/librarians/products/journals/
Enhancing the performance of DNA surface-hybridization biosensors through target depletion
Creators: name: Nomidis, Stefanos K.
name: Szymonik, Michal
name: Venken, Tom
name: Carlon, Enrico
name: Hooyberghs, Jef
Publisher: name: arXiv
Year: 2019
Subjects: subject: Biomolecules (q-bio.BM)
subject: Chemical Physics (physics.chem-ph)
subject: FOS: Biological sciences
subject: FOS: Physical sciences

description: DNA surface-hybridization biosensors utilize the selective hybridization of target sequences in solution to surface-immobilized probes. In this process, the target is usually assumed to be in excess, so that its concentration does not significantly vary while hybridizing to the surface-bound probes. If the target is initially at low concentrations and/or if the number of probes is very large and have high affinity for the target, the DNA in solution may get depleted. In this paper we analyze the equilibrium and kinetics of hybridization of DNA biosensors in the case of strong target depletion, by extending the Langmuir adsorption model. We focus, in particular, on the detection of a small amount of a single-nucleotide "mutant" sequence (concentration $c_2$) in a solution, which differs by one or more nucleotides from an abundant "wild-type" sequence (concentration $c_1 \gg c_2$). We show that depletion can give rise to a strongly-enhanced sensitivity of the biosensors. Using representative values of rate constants and hybridization free energies, we find that in the depletion regime one could detect relative concentrations $c_2/c_1$ that are up to three orders of magnitude smaller than in the conventional approach. The kinetics is surprisingly rich, and exhibits a non-monotonic adsorption with no counterpart in the no-depletion case. Finally, we show that, alongside enhanced detection sensitivity, this approach offers the possibility of sample enrichment, by substantially increasing the relative amount of the mutant over the wild-type sequence.
description: 27 pages, 4 figures
Spacetime Structure of Massive Gravitinos
Creators: name: Kirchbach, M.
name: Ahluwalia, D. V.
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Astrophysics (astro-ph)
subject: High Energy Physics - Theory (hep-th)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: The talk presents an ab initio construct of the spacetime structure underlying massive gravitinos. We argue that single spin interpretation of massive gravitino is untenable, and that a spin measurement in the rest frame for an unpolarized ensemble of massive gravitinos, would yield the results 3/2^- with probability one half, and 1/2 with probability one half. The latter is distributed uniformly, i.e. as 1/4, among the two spin-1/2^+ and spin-1/2^- states of opposite parities. From that we draw the conclusion that the massive gravitino should be interpreted as a particle of multiple spin. We expect that a extension of this work to finite-range gravity shall endow the graviton with spins 0, 1, and 2 components.
description: 13 pages, 2 figures, uses iopart.cls, Invited talk at Beyond the Desert 2002, Oulu, Finland, June 2-7, 2002
Impact of Non-perturbative QCD on CP Violation in Many-Body Final States of Flavor Transitions
Creators: name: Bigi, I. I.
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The title of my talk pointed out central statements: the impact of non-perturbative QCD on {\bf CP} asymmetries in many-body FS in charm \& beauty hadrons. For practical reasons one measures first {\bf CP} violation in two-body final states of heavy flavor hadrons. However, those are small parts of charm hadrons and tiny ones for beauty hadrons; therefore one has to probe {\bf CP} asymmetries in three- \& four-body final states. Thus the transitions to the many-body FS basically give information about the underlying dynamics. The impact of non-perturbative QCD on {\bf CP} asymmetries in many-body FS shows that -- in principle; it is a true challenge even in a semi-quantitative way. One needs correlations with other transitions. That is my strategy; however, I have to discuss the tactics on the same level like using consistent parameterization of the CKM matrix. Our community has entered a novel era: direct {\bf CP} violation has been found in $D^0 \to h^+h^-$ decays \cite{CHARM}. Finally I give short comments about the possible impact of New Dynamics on direct {\bf CP} violation in $K_L \to 2 π$ and probe {\bf CP} asymmetry in $J/ψ\to \bar ΛΛ$ transitions.
description: 4 pages, 1 figure
Additional file 1 of Dental pulp stem cell-derived exosomes revitalize salivary gland epithelial cell function in NOD mice via the GPER-mediated cAMP/PKA/CREB signaling pathway
Creators: name: Hu, Shilin
name: Chen, Bo
name: Zhou, Jiannan
name: Liu, Fangqi
name: Mao, Tianjiao
name: Pathak, Janak L.
name: Watanabe, Nobumoto
name: Li, Jiang
Publisher: name: figshare
Year: 2023
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Plant Biology
subject: Virology

description: Additional file 1: Figure S1. DPSC-Exos treatment in vivo enhanced AQP5 expression.Immunofluorescence staining of AQP5 in mice submandibular glands. Scale bar: 100 μm. Data are presented as the mean ± SD, n = 6. Significant effect of the treatment, *p < 0.05, **p < 0.01, ***p < 0.001.
Chronic paracetamol treatment induces neuroinflammation and microglia activation in rat hippocampus
Creators: name: Laddawan Lalert
name: Preecha Ruangvejvorachai
name: Supang Maneesri-Le Grand
Publisher: name: Faculty of Medicine Chulalongkorn University
Year: 2021
Subjects: Paracetamol
pro-inflammatory cytokine
microglia activation
Nrf2
hippocampus

description: Chulalongkorn Medical Journal, 65, 3, 225-233
Additional file 1: of Constitutive and induced insect resistance in RNAi-mediated ultra-low gossypol cottonseed cotton
Creators: name: Hagenbucher, Steffen
name: Eisenring, Michael
name: Meissle, Michael
name: Keerti Rathore
name: Jรถrg Romeis
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Ecology
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Figure S1. Interaction plot for leaf area consumed by S. littoralis larvae after 4 days. Figure S2. Interaction plot for leaf area consumed by S. littoralis larvae after 7 days. Figure S3. Interaction plot for weight of S. littoralis larvae after 4 days. Figure S4. Interaction plot for weight of S. littoralis larvae after 7 days. (DOCX 3984 kb)
Nanoporous graphene: a 2D semiconductor with anisotropic mechanical, optical and thermal conduction properties
Creators: name: Mortazavi, Bohayra
name: Madjet, Mohamed E.
name: Shahrokhi, Masoud
name: Ahzi, Said
name: Zhuang, Xiaoying
name: Rabczuk, Timon
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Nanoporous graphene (NPG), consisting of ordered arrays of nanopores separated by graphene nanoribbons was recently realized using a bottom-up synthesis method (Science 360(2018), 199). In this work we accordingly explored the mechanical response, thermal conductivity and electronic/optical properties of single-layer NPG using the density functional theory and molecular dynamics simulations. Along the armchair direction, NPG was found to exhibit higher tensile strength and thermal conductivity by factors of 1.6 and 2.3, respectively, in comparison with the zigzag direction. Despite of showing high rigidity and tensile strength, NPG was predicted to show around two orders of magnitude suppressed thermal conductivity than graphene. Results based on GGA/PBE highlight that NPG monolayer presents semiconducting electronic character with a direct band-gap of 0.68 eV. According to the HSE06 estimation, NPG monolayer shows a band-gap of 0.88 eV, very promising for the application in nanoelectronics. Optical results reveal that NPG nanomembranes can absorb the visible, IR and NIR light. This work highlights the outstanding physics of NPG, as a novel porous carbon based two-dimensional material, which may serve as a promising candidate to design advanced nanoelectronics, nanooptics and energy conversion systems.
Polymerus (Poeciloscytus) brevicornis
Creators: name: Linnavuori, Rauno E.
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Miridae
Polymerus
Polymerus brevicornis

description: Polymerus (Poeciloscytus) brevicornis (Reuter, 1879)
 Material examined. WEST AZERBAIJAN: Marangalu near Urumiyeh, 2 specimens, 15.–17.vii.2004; Nushin Sar near Urumiyeh, 3 specimens, 25.–27.vi.2006.
 Comments. At light in gardens near salt marshes. Recorded on Galium. Widely distributed from Central and south Europe to Central Asia and Russian Far East.
description: Published as part of Linnavuori, Rauno E., 2009, Studies on the Nepomorpha, Gerromorpha, Leptopodomorpha, and Miridae excluding Phylini (Hemiptera: Heteroptera) of Khuzestan and the adjacent provinces of Iran, pp. 1-32 in Acta Entomologica Musei Nationalis Pragae 49 (1) on page 23, DOI: 10.5281/zenodo.5318851
Effects of overweight and smoking on aerobic capacity, autonomic and pulmonary function in physically inactive middle-aged male
Creators: name: Tharnwimol Inthachai
name: Natchaya Chondaen
name: Surinthorn Maiarin
name: Wannasiri Kummungkun
name: Kroekkiat Chinda
name: Naphatsorn Aroonprasertkul
Publisher: name: Faculty of Medicine Chulalongkorn University
Year: 2021
Subjects: Overweight
smoking
aerobic capacity
autonomic function
pulmonary function

description: Chulalongkorn Medical Journal, 65, 3, 235-242
Homology model of the C-terminal domain of human annexin A11 (ANXA11) based on human annexin A4
Creators: name: Forrest, Lucy
name: Nelson, Matthew
Publisher: name: Zenodo
Year: 2019
Subjects: Homology model
Protein structure
Calcium binding
Electrostatics

description: This archive contains generation files and homology models of human annexin A11’s C-terminal domain (residues 192-505) with or without 4 bound calcium ions, built using human annexin A4 with bound calcium. Representative models A single representative model was selected for the apo: anxa11_cterm.B99990009.pdb
 A single representative model was selected for the holo protein: anxa11_cterm.B999900038.pdb
 Methods The template coordinates of chain A were extracted from PDB ID 2ZOC. The alignment contains no gaps, as indicated by iTasser. In the holo model, distance restraints between calcium ions and nearby oxygen atoms were assigned based on the equivalent distances in the template, as computed using PyMol. The final model was selected from the attached ensemble of 100 models in the *all_100_models* folder. Models were generated by Modeller 9.20 with the input files in the *Modeller_files/* subfolder, before filtration with MolPDF, then ProQ, then PROCHECK, then MolProbity. Electrostatic surfaces were shown using the files in the *Electrostatics/* subfolder. The calcium atoms were renamed using *rename_cal.csh*, and the resultant pdb file *anxa11_cterm.B99990038_rename.pdb* was used as input to generate the correct partial charges using APBS v1.3 with the CHARMM force field. The maps of the calcium-free model were generated for the pdb file *anxa11_cterm.B99990009.pdb*. This assumes no major conformational changes occur as a result of calcium binding, which is likely to be the case, based on comparison of calcium-bound 2ZOC and calcium-free 2ZHJ. The pymol session containing the maps can be viewed with Pymol v2.3.0 This work was supported by the National Institutes of Health, National Institute of Neurological Disorders and Stroke intramural research program. For more details, see Liao Y-C, Fernandopulle M, Wang G, Choi H, Hao L, Drerup CM, Qamar S, Nixon-Abel J, Shen Y, Meadows W, Vendruscolo M, Knowles T, Nelson M, Czekalska M, Musteikyte G, Gachechiladze M, Patel R, Stephens C, Pasolli A, Forrest LR, St George-Hyslop P, Lippincott-Schwartz J, Ward ME, "RNA granules hitchhike on lysosomes for long-distance transport, using annexin A11 as a molecular tether" Cell (2019) in press.
Supplementary document for Femtosecond-laser-based full-field three-dimensional imaging with phase compensation - 6409338.pdf
Creators: name: Shi, Liheng
name: wang, yue
name: Zhang, Ruixue
name: Zhang, Jinxu
name: Yang, Yuetang
name: Li, Yang
name: Chen, Jiayang
name: Zhou, Siyu
name: Wu, Guanhao
Publisher: name: Optica Publishing Group
Year: 2023
Subjects: Photodetectors, Optical Sensors and Solar Cells
Optical Technology

description: Algorithm, Limitation of exposure duration on the downsampling method, and Precision analysis results with different parameters
Optical Evidence of Multiphase Coexistence in Single Crystalline (La,Pr,Ca)MnO3
Creators: name: Lee, H. J.
name: Kim, K. H.
name: Kim, M. W.
name: Noh, T. W.
name: Kim, B. G.
name: Koo, T. Y.
name: Cheong, S. -W.
name: Wang, Y. J.
name: Wei, X.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We investigated temperature (T)- and magnetic field-dependent optical conductivity spectra (\s\w) of a La_5/8-yPr_yCa_3/8MnO_3 (y~0.35) single crystal, showing intriguing phase coexistence at low T. At T_C < T < T_CO, a dominant charge-ordered phase produces a large optical gap energy of ~0.4 eV. At T < T_C, at least two absorption bands newly emerge below 0.4 eV. Analyses of (\s\w) indicate that the new bands should be attributed to a ferromagnetic metallic and a charge-disordered phase that coexist with the charge-ordered phase. This optical study clearly shows that La_5/8-yPrCa_3/8MnO_3 (y~0.35) is composed of multiphases that might have different lattice strains.
description: A single file with 9 figures embedded, to appear in Phys. Rev. B
Additional file 1: of Shifts in the distribution and abundance of coastal marine species along the eastern Pacific Ocean during marine heatwaves from 2013 to 2018
Creators: name: Lonhart, Steve
name: Jeppesen, Rikke
name: Beas-Luna, Rodrigo
name: Crooks, Jeffrey
name: Lorda, Julio
Publisher: name: figshare
Year: 2019
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: This supplement includes detailed information on each of the 29 species, their historic ranges, their current ranges, how the species was reported by observers, which sampling methods the observers used, and comments by the authors. (DOCX 38 kb)
Isotope Effects in Liquid Water via Deep Potential Molecular Dynamics
Creators: name: Ko, Hsin-Yu
name: Zhang, Linfeng
name: Santra, Biswajit
name: Wang, Han
name: E, Weinan
name: DiStasio, Robert A.
name: Car, Roberto
Publisher: name: arXiv
Year: 2019
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: A comprehensive microscopic understanding of ambient liquid water is a major challenge for $ab$ $initio$ simulations as it simultaneously requires an accurate quantum mechanical description of the underlying potential energy surface (PES) as well as extensive sampling of configuration space. Due to the presence of light atoms (e.g., H or D), nuclear quantum fluctuations lead to observable changes in the structural properties of liquid water (e.g., isotope effects), and therefore provide yet another challenge for $ab$ $initio$ approaches. In this work, we demonstrate that the combination of dispersion-inclusive hybrid density functional theory (DFT), the Feynman discretized path-integral (PI) approach, and machine learning (ML) constitutes a versatile $ab$ $initio$ based framework that enables extensive sampling of both thermal and nuclear quantum fluctuations on a quite accurate underlying PES. In particular, we employ the recently developed deep potential molecular dynamics (DPMD) model---a neural-network representation of the $ab$ $initio$ PES---in conjunction with a PI approach based on the generalized Langevin equation (PIGLET) to investigate how isotope effects influence the structural properties of ambient liquid H$_2$O and D$_2$O. Through a detailed analysis of the interference differential cross sections as well as several radial and angular distribution functions, we demonstrate that this approach can furnish a semi-quantitative prediction of these subtle isotope effects.
description: 19 pages, 5 figures, and 1 table