cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Chronostrain Manuscript: BBS Analysis Database and Output
Creators: name: Kim, Younhun
name: Gibson, Travis E.
Publisher: name: Zenodo
Year: 2025
Subjects: Metagenomics
Strain Quantification
Infant
Early Life
ChronoStrain

description: This upload contains files pertaining to the BabyBiome analysis as it appears in the ChronoStrain publication (2025 Kim et al.). Specifically, this repository contains the following files related to the analysis of the BabyBiome Study (2019 Shao et al.) on those samples with cultured E. faecalis isolates.

Instructions: To use these files, please download all files and extract each archive into the same folder. For instance: tar -xvzf ELMC_*.tar.gz -C target_dir. These unpacked files can then be used by the jupyter notebook infant-nt/notebooks/timeseries_plots.ipynb found in the chronostrain paper repository. Please refer to the README file (infant-nt/README.md) for step-by-step instrucitons.

Database files for ChronoStrain (99.8% clustering) -- normal and mutated  -- [ELMC_chronostrain_db*]

Database files for mGEMS (tuned to match ChronoStrain's ELMC isolate granularity) -- normal and mutated  -- [ELMC_mgems_db*]

fastMLST annotations for genomes (newly added in v2) -- [ELMC_fastmlst.tar.gz -- newly added in v2]

Outputs for all infants using both methods (five analyses total) -- [ELMC_output.tar.gz.part* + ELMC_chronostrain_99_99pct.tar.gz]

chronostrain

chronostrain w/ fine-grained database (chronostrain_99_99pct.tar.gz -- newly added in v2)

chronostrain w/ mutation

mgems (original nat.comm. index)

mgems (chronostrain re-tuned)

mgems (re-tuned and w/ mutation)

TSV tables containing outputs (generated using the notebook examples/infant-nt/notebooks/inference_comparison.ipynb) --- [infant_analysis_tables.zip]

A TSV table listing the non-Efaecalis genomes used to construct ChronoStrain's database -- [Enterococcaceae_index.tsv]

Note: this index includes RefSeq E.faecalis genome, which were excluded from the database construction. For analysis, the only E.faecalis genomes included were the ~2000 European E.faecalis isolates (2021 Pontinen et al.) and the ~350 ELMC infant isolates -- those isolates are not listed on this TSV file. Refer to the notebook "examples/infant-nt/notebooks/database_efaecalis_elmc.ipynb" to see how this is used.

[Note 1: the output files have been split into ~500MB parts using the "split" utility in linux. To re-join them, use the command cat ELMC_output.tar.gz.part* > ELMC_output.tar.gz]

[Note 2: We formerly called this dataset "Early life microbiota cohort (ELMC)" on an earlier version of our paper, and thus the filenames have an "ELMC_" prefix for legacy reasons.]
New Simple Method of Expansion of Iterated Ito Stochastic integrals of Multiplicity 2 Based on Expansion of the Brownian Motion Using Legendre Polynomials and Trigonometric Functions
Creators: name: Kuznetsov, Dmitriy F.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Probability (math.PR)
subject: FOS: Mathematics

description: The article is devoted to the expansion of iterated Ito stochastic integrals of second multiplicity based on expansion of the Brownian motion (standard Wiener process) using complete orthonormal systems of functions in the space $L_2([t, T]).$ The cases of Legendre polynomials and trigonometric functions are considered in details. We obtained a new representation of the Levy stochastic area based on the Legendre polynomials. This representation was first derived in the author's work (1997). In this article, we obtain the mentioned representation by a simpler method compared to the author's work (1997). Also, we get the polynomial representation of the Levy stochastic area using the method of expansion of iterated Ito stochastic integrals based on generalized multple Fourier series. The polynomial representation of the Levy stochastic area has more simple form in comparison with the classical trigonometric representation of the Levy stochastic area. The convergence in the mean of degree $2n$ $(n\in\mathbb{N})$ as well as the convergence with probability 1 for approximations of the Levy stochastic area are proved. The results of the article can be applied to the numerical solution of Ito stochastic differential equations as well as to the numerical approximation of mild solution for non-commutative semilinear stochastic partial differential equations.
description: 23 pages. Some typos have been corrected. arXiv admin note: text overlap with arXiv:1806.10705, arXiv:1712.09516, arXiv:1801.01564, arXiv:1801.06501, arXiv:1801.03195, arXiv:1802.00643, arXiv:1712.09746, arXiv:1802.00888, arXiv:1801.01962, arXiv:1801.00784
Athous (Athous) obsoletus Portugal-Espana
Creators: name: Zapata, José Luis
name: Sánchez-Ruiz, Antonio
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Elateridae
Athous
Athous obsoletus

description: Athous (Athous) obsoletus (Illiger, 1807)
 Distribución; España, Portugal.
 ESPAÑA
 ANDALUCÍA; Cádiz, Málaga. ASTURIAS; Asturias.
 CANTABRIA; Santander. CASTILLA-LA MANCHA; Ciudad Real, Toledo. CASTILLA Y LEÓN; Ávila, León, Palencia, Salamanca, Zamora. GALICIA; La Coruña, Lugo, Orense. LA RIOJA; Logroño. PAÍS VASCO; Vizcaya.
 PORTUGAL
 R. ALENTEJO; Évora, Portalegre. R. ALGARVE; Faro. R. CENTRO; Aveiro, Coimbra, Guarda, Leiria. R. LISBOA; Seṫbal. R. NORTE; Braga, BraganÇa, Vila Real.
  Nota; Nueva referencia de Toledo en Sáez et al. (2014).
description: Published as part of Zapata, José Luis & Sánchez-Ruiz, Antonio, 2015, Nuevas aportaciones al catálogo de la familia Elateridae (Coleoptera) en la Península Ibérica e Islas Baleares, III., pp. 153-194 in Arquivos Entomolóxicos 13 on page 160, DOI: 10.5281/zenodo.12714609
Chronostrain Manuscript: BBS Analysis Database and Output
Creators: name: Kim, Younhun
name: Gibson, Travis E.
Publisher: name: Zenodo
Year: 2024
Subjects: Metagenomics
Strain Quantification
Infant
Early Life
ChronoStrain

description: [NOTE: This zenodo upload version has a few missing files. Please use the "v2" version of the archive instead: https://zenodo.org/records/15053001]

This upload contains files pertaining to the BabyBiome analysis as it appears in the ChronoStrain publication (2025 Kim et al.). Specifically, this repository contains the following files related to the analysis of the BabyBiome Study (2019 Shao et al.) on those samples with cultured E. faecalis isolates.

We formerly called this dataset "Early life microbiota cohort (ELMC)" on an earlier version of our paper, and thus the filenames have an "ELMC_" prefix for legacy reasons.

Database files for ChronoStrain (99.8% clustering) -- normal and mutated  -- [ELMC_chronostrain_db*]

Database files for mGEMS (tuned to match ChronoStrain's ELMC isolate granularity) -- normal and mutated  -- [ELMC_mgems_db*]

Outputs for all infants using both methods (five analyses total) -- [ELMC_output.tar.gz.part*]

chronostrain

chronostrain w/ mutation

mgems (original nat.comm. index)

mgems (chronostrain re-tuned)

mgems (re-tuned and w/ mutation)

TSV tables containing outputs (generated using the notebook examples/infant-nt/notebooks/inference_comparison.ipynb) --- [infant_analysis_tables.zip]

A TSV table listing the non-Efaecalis genomes used to construct ChronoStrain's database -- [Enterococcaceae_index.tsv]

Note: this index includes RefSeq E.faecalis genome, which were excluded from the database construction. For analysis, the only E.faecalis genomes included were the ~2000 European E.faecalis isolates (2021 Pontinen et al.) and the ~350 ELMC infant isolates -- those isolates are not listed on this TSV file. Refer to the notebook "examples/infant-nt/notebooks/database_efaecalis_elmc.ipynb" to see how this is used.

[Note: the output files have been split into ~500MB parts using the "split" utility in linux. To re-join them, use the command "cat ELMC_output.tar.gz.part* > ELMC_output.tar.gz"]
Crystal structure, computational studies, and stereoselectivity in the synthesis of 2-aryl-thiazolidine-4-carboxylic acids via in situ imine intermediate
Creators: name: Rohidas M. Jagtap
name: Rizvi, Masood A.
name: Yuvraj B. Dangat
name: Pardeshi, Satish K.
Publisher: name: Taylor & Francis
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: This article presents the synthesis of (2R/2S,4R)-2-aryl-thiazolidine-4-carboxylic acids via nucleophilic addition of L-Cysteine on aromatic aldehydes involving a yield and time-effective room temperature reaction in an aqueous DMSO medium in the presence of NaHCO3 as a base. The synthesized diastereomers were spectroscopically characterized and quantified for diastereomeric excess by liquid chromatography-mass spectrometry analysis. The impact of the type and position of substituent in aromatic aldehydes on reaction time, % yield, 1H NMR shift at newly formed chiral center [C(2)-H], and diastereomeric excess (de%) have been investigated. A plausible mechanism for stereoselectivity via an in situ imine intermediate is proposed using real-time IR monitoring of the synthetic reaction based on the significant signals at 1597, 1593 cm−1 for imine (C=N) stretching. The imine mechanism for stereoselectivity was further supported by NMR studies of azomethine 13C NMR signals at 159, 160 δ ppm and by the single crystal structure of hitherto unknown (2S,4R)-3-(tert-butoxycarbonyl)-2-(2-hydroxyphenyl)thiazolidine-4-carboxylic acid (3a) obtained as a major diastereomer in the synthesis of the butyloxy carbonyl (BOC) derivative of (2R/2S,4R)-2-(2-hydroxyphenyl)thiazolidine-4-carboxylic acid. The significant ortho-OH effect of phenolic hydroxyl group leading to strong hydrogen bondings plays a vital role in the formation of 2S,4R BOC derivative stereoselectively. The frontier molecular orbitals, possible electronic excitations, IR band characterizations, and reactivity parameters of newly reported compound (3a) have been predicted using quantum chemical descriptors from density functional theory. The theoretical exploration of experimental spectra using time-dependent DFT indicated a (π–π*) transition between HOMO and LUMO in the ultraviolet region.
On the Total Curvature and Betti Numbers of Complex Projective Manifolds
Creators: name: Hoisington, Joseph Ansel
Publisher: name: arXiv
Year: 2018
Subjects: subject: Differential Geometry (math.DG)
subject: Algebraic Geometry (math.AG)
subject: FOS: Mathematics
subject: 53C55 (primary) 51N35, 53C65 (secondary)

description: We prove an inequality between the sum of the Betti numbers of a complex projective manifold and its total curvature, and we characterize the complex projective manifolds whose total curvature is minimal. These results extend the classical theorems of Chern and Lashof to complex projective space.
description: Comments welcome
Regularity and Sensitivity for McKean-Vlasov Type SPDEs Generated by Stable-like Processes
Creators: name: Kolokoltsov, Vassili
name: Troeva, Marianna
Publisher: name: arXiv
Year: 2018
Subjects: subject: Optimization and Control (math.OC)
subject: Probability (math.PR)
subject: FOS: Mathematics
subject: 60H15, 60J60, 91A06, 91A15, 49L20, 82C22

description: In this paper we study the sensitivity of nonlinear stochastic differential equations of McKean-Vlasov type generated by stable-like processes. By using the method of stochastic characteristics, we transfer these equations to the non-stochastic equations with random coefficients thus making it possible to use the results obtained for nonlinear PDE of McKean-Vlasov type generated by stable-like processes in the previous works. The motivation for studying sensitivity of nonlinear McKean-Vlasov SPDEs arises naturally from the analysis of the mean-field games with common noise.
description: arXiv admin note: text overlap with arXiv:1710.10606
Tunable double notch filter on thin-film lithium niobate platform
Creators: name: Hou, Songyan
name: Hu, Hao
name: Liu, Zhihong
name: Xing, Weichuan
name: Zhang, Jincheng
name: Hao, Yue
Publisher: name: arXiv
Year: 2024
Subjects: subject: Optics (physics.optics)
subject: Applied Physics (physics.app-ph)
subject: FOS: Physical sciences

description: Tunable optical filter at the chip scale plays a crucial role in fulfilling the need for the reconfigurability in channel routing, optical switching, and wavelength division multiplexing systems. In this letter, we propose a tunable double notch filter on thin-film lithium niobate using dual micro-ring architecture. This unique integrated filter is essential for complex photonic integrated circuits, along with multiple channels and various frequency spacing. With only one loaded voltage, the device demonstrates a wide frequency spacing tunability from 16.1 GHz to 89.9 GHz by reversely tunning the resonances of the two micro-rings while the center wavelength between the two resonances remains unaltered. Moreover, by utilizing the pronounced electro-optic properties of lithium niobate, associated with the tight light confinement nanophotonic waveguides, the device demonstrates a spacing tunability of 0.82 GHz/V and a contrast of 10~16 dB. In addition, the device has an ultracompact footprint of 0.0248 mm2.
description: accepted by Optics Letters
Old-Aged Stellar Population Distance Indicators
Creators: name: Beaton, Rachael L.
name: Bono, Giuseppe
name: Braga, Vittorio Francesco
name: Dall'Ora, Massimo
name: Fiorentino, Giuliana
name: Jang, In Sung
name: Martínez-Vázquez, Clara E.
name: Matsunaga, Noriyuki
name: Monelli, Matteo
name: Neeley, Jillian R.
name: Salaris, Maurizio
Publisher: name: arXiv
Year: 2018
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Old-aged stellar distance indicators are present in all Galactic structures (halo, bulge, disk) and in galaxies of all Hubble types and, thus, are immensely powerful tools for understanding our Universe. Here we present a comprehensive review for three primary standard candles from Population II: (i) RR Lyrae type variables (RRL), (ii) type II Cepheid variables (T2C), and (iii) the tip of the red giant branch (TRGB). The discovery and use of these distance indicators is placed in historical context before describing their theoretical foundations and demonstrating their observational applications across multiple wavelengths. The methods used to establish the absolute scale for each standard candle is described with a discussion of the observational systematics. We conclude by looking forward to the suite of new observational facilities anticipated over the next decade; these have both a broader wavelength coverage and larger apertures than current facilities. We anticipate future advancements in our theoretical understanding and observational application of these stellar populations as they apply to the Galactic and extragalactic distance scale.
description: Accepted to Space Science Reviews special issue on "Astronomical Distance Determination in the Space Age" -- Comprehensive means long: 34 Figures, 84 Pages
Cidnopus aeruginosus Portugal-Espana
Creators: name: Zapata, José Luis
name: Sánchez-Ruiz, Antonio
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Elateridae
Cidnopus
Cidnopus aeruginosus

description: Cidnopus aeruginosus (Olivier, 1790)
 Distribución; Alemania, Austria, Bélgica, Bielorrusia, Bulgaria, Chequia, Dinamarca, Eslovaquia, Eslovenia, España, Estonia, Francia, Finlandia, Gran Bretaña, Holanda, Italia, Irlanda, Letonia, Liechtenstein, Lituania, Luxemburgo, Macedonia, Noruega, Polonia, Rumanía, Rusia, Serbia, Suecia, Suiza, Ucrania. Rusia (Siberia).
  Nota: En la distribución del catálogo paleártico (Cate, 2007) se lista Finlandia, Hungría, Irlanda y Liechtenstein, como países en los que la especie está presente y no recogidos en anteriores actualizaciones del catálogo de elatéridos iberobalear, si bien Merkl y Mertlik (2005) asignan las citas de Hungría de C. aeruginosus a C. ruzenae (Laibner, 1977) por lo que, siguiendo a estos autores, no incluiremos este país.
description: Published as part of Zapata, José Luis & Sánchez-Ruiz, Antonio, 2015, Nuevas aportaciones al catálogo de la familia Elateridae (Coleoptera) en la Península Ibérica e Islas Baleares, III., pp. 153-194 in Arquivos Entomolóxicos 13 on page 164, DOI: 10.5281/zenodo.12714609
Limonius poneli Leseigneur y Mertlik 2007
Creators: name: Zapata, José Luis
name: Sánchez-Ruiz, Antonio
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Elateridae
Limonius
Limonius poneli

description: Limonius poneli Leseigneur y Mertlik, 2007
 Distribución; Alemania, Andorra, Armenia, Austria, Bosnia y Herzegovina, Bulgaria, Chequia, Eslovaquia, Eslovenia, España, Francia, Gran Bretaña, Grecia, Hungría, Italia, Polonia, Rumanía, Rusia, Serbia, Suiza. Turquía.
 Nota; Németh y Platia (2014) amplían la distribución de la especie a Bosnia y Herzegovina, y Bulgaria, al tiempo que la señalan de Alemania (Rupp, 2010), Suiza (Chittaro y Blanc, 2012) y de Armenia y Rusia (Prosvirov, 2013).
description: Published as part of Zapata, José Luis & Sánchez-Ruiz, Antonio, 2015, Nuevas aportaciones al catálogo de la familia Elateridae (Coleoptera) en la Península Ibérica e Islas Baleares, III., pp. 153-194 in Arquivos Entomolóxicos 13 on page 166, DOI: 10.5281/zenodo.12714609
Hypnoidus riparius Portugal-Espana
Creators: name: Zapata, José Luis
name: Sánchez-Ruiz, Antonio
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Elateridae
Hypnoidus
Hypnoidus riparius

description: Hypnoidus riparius (Fabricius, 1792)
 Distribución; Alemania, Andorra, Austria, Bélgica, Bielorrusia, Bulgaria, Chequia, Dinamarca (Is. Feroe), Eslovaquia, Eslovenia, España, Estonia, Finlandia, Francia, Gran Bretaña, Grecia, Holanda, Hungría, Irlanda, Islandia, Italia, Letonia, Lituania, Noruega, Polonia, Rumanía, Rusia, Suecia, Suiza, Ucrania. China, Rusia (Siberia).
 Nota; Németh y Platia (2014) dan la primera localización de esta especie en Grecia. En Cate (2007) se incluye además Ucrania e Islas Feroe, no listadas anteriormente.
 ESPAÑA
 ARAGÓN; Huesca. ASTURIAS; Asturias. CASTILLA Y LEÓN; Ávila, Segovia, León. CATALUÑA; Barcelona, Gerona, Lérida. MADRID; Madrid.
  Nota; Citada de Barcelona (Viñolas et al., 2014b).
description: Published as part of Zapata, José Luis & Sánchez-Ruiz, Antonio, 2015, Nuevas aportaciones al catálogo de la familia Elateridae (Coleoptera) en la Península Ibérica e Islas Baleares, III., pp. 153-194 in Arquivos Entomolóxicos 13 on pages 167-168, DOI: 10.5281/zenodo.12714609
Aplotarsus incanus Portugal-Espana
Creators: name: Zapata, José Luis
name: Sánchez-Ruiz, Antonio
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Elateridae
Aplotarsus
Aplotarsus incanus

description: Aplotarsus incanus (Gyllenhal, 1827)
 Distribución; Alemania, Austria, Bélgica, Bielorrusia, Chequia, Dinamarca, Eslovaquia, España, Estonia, Finlandia, Francia, Gran Bretaña, Holanda, Irlanda, Italia, Letonia, Liechtenstein, Luxemburgo, Noruega, Polonia, Rumanía, Rusia, Suecia, Suiza, Ucrania. Kazajistán, Rusia. Argelia.
 Nota; Cate (2007) incluye en la distribución de la especie Ucrania y Argelia, no listadas anteriormente.
description: Published as part of Zapata, José Luis & Sánchez-Ruiz, Antonio, 2015, Nuevas aportaciones al catálogo de la familia Elateridae (Coleoptera) en la Península Ibérica e Islas Baleares, III., pp. 153-194 in Arquivos Entomolóxicos 13 on page 168, DOI: 10.5281/zenodo.12714609
The hyperspace of non blockers of $F_1(X)$
Creators: name: Camargo, Javier
name: Maya, David
name: Ortiz, Luis
Publisher: name: arXiv
Year: 2018
Subjects: subject: General Topology (math.GN)
subject: FOS: Mathematics
subject: 54B20, 54F15

description: A continuum is a compact connected metric space. A non-empty closed subset $B$ of a continuum $X$ does not block $x\in X\setminus B$ provided that the union of all subcontinua of $X$ containing $x$ and contained in $X\setminus B$ is dense in $X$. We denote the collection of all non-empty closed subset $B$ of $X$ such that $B$ does not block each element of $X\setminus B$ by $NB(F_1(X))$. In this paper we show some properties of the hyperspace $NB(F_1(X))$. Particularly, we prove that the simple closed curve is the unique continuum $X$ such that $NB(F_1(X))=F_1(X)$, given a positive answer to a question posed by Escobedo, Estrada-Obregón and Villanueva in 2012.
Different in vitro exposure regimens of murine primary macrophages to silver nanoparticles induce different fates of nanoparticles and different toxicological and functional consequences
Creators: name: Aude-Garcia, Catherine
name: Villiers, Florent
name: Collin-Faure, Véronique
name: Pernet-Gallay, Karin
name: Pierre-Henri Jouneau
name: Sorieul, Stéphanie
name: Mure, Geoffrey
name: Gerdil, Adèle
name: Herlin-Boime, Nathalie
name: Carrière, Marie
name: Rabilloud, Thierry
Publisher: name: Taylor & Francis
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified

description: Silver nanoparticles (Ag-NPs) are used in a variety of consumers’ goods. Their toxicological impact is currently intensely studied, mostly upon acute exposure, but their intracellular dissolution and fate is rather poorly documented. In this study, murine primary macrophages were exposed to a single high but non-lethal dose of Ag-NPs or to repeated, low doses of Ag-NPs. Cells were either collected immediately after acute exposure or after 72 h of recovery in the NP-free exposure medium. Ag intracellular content and distribution were analyzed by particle-induced X-ray emission, transmission electron microscopy coupled to energy-dispersive spectroscopy analysis and inductively coupled plasma mass spectrometry. In parallel, macrophage functionality as well as inflammatory and thiol-responses were assessed after Ag-NP exposure. We show that Ag accumulation in macrophages is similar upon acute and repeated exposure to Ag-NPs, and that Ag is partly expelled from cells during the 72 h recovery stage. However, acute exposure leads to a strong response of macrophages, characterized by reduced mitochondrial membrane potential, phagocytic capacity and nitric oxide (NO) production upon lipopolysaccharide (LPS) stimulation. Under this condition, we also show an increased release of proinflammatory cytokines as well as a decreased release of anti-inflammatory cytokines. This response is reversible since these biomarkers reach their basal level after the recovery phase; and is much less intense in repeatedly exposed cells. These results suggest that repeated exposure of macrophages to Ag-NPs, which is a more realistic exposure scenario than acute exposure, leads to significant Ag intracellular accumulation but a much less intense toxicological response.
Calambus bipustulatus Portugal-Espana
Creators: name: Zapata, José Luis
name: Sánchez-Ruiz, Antonio
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Elateridae
Calambus
Calambus bipustulatus

description: Calambus bipustulatus (Linnaeus, 1767)
 Distribución; Alemania, Austria, Bélgica, Bielorrusia, Bosnia y Herzegovina, Bulgaria, Chequia, Croacia, Dinamarca, Eslovaquia, Eslovenia, España, Francia (Córcega), Gran Bretaña, Grecia, Holanda, Hungría, Irlanda, Italia, Letonia, Lituania, Luxemburgo, Montenegro, Noruega, Polonia, Rumanía, Rusia, Serbia, Suecia, Suiza, Ucrania. Rusia (Siberia), Turquía.
  Nota; Platia et al. (2014) dan la primera cita para Turquía de esta especie.
description: Published as part of Zapata, José Luis & Sánchez-Ruiz, Antonio, 2015, Nuevas aportaciones al catálogo de la familia Elateridae (Coleoptera) en la Península Ibérica e Islas Baleares, III., pp. 153-194 in Arquivos Entomolóxicos 13 on page 168, DOI: 10.5281/zenodo.12714609
Measurement of exclusive $Υ$ photoproduction from protons in pPb collisions at $\sqrt{s_\mathrm{NN}} =$ 5.02 TeV
Creators: name: CMS Collaboration
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: The exclusive photoproduction of $Υ$(nS) meson states from protons, $γ$p $ \toΥ$(nS)p (with n = 1, 2, 3), is studied in ultraperipheral pPb collisions at a centre-of-mass energy per nucleon pair of $\sqrt{s_\mathrm{NN}} =$ 5.02 TeV. The measurement is performed using the $Υ$(nS) $\to μ^+μ^-$ decay mode, with data collected by the CMS experiment corresponding to an integrated luminosity of 32.6 nb$^{-1}$. Differential cross sections as functions of the $Υ$(nS) transverse momentum squared $p_\mathrm{T}^2$, and rapidity $y$, are presented. The $Υ$(1S) photoproduction cross section is extracted in the rapidity range $|y|$ $
description: Replaced with the published version. Added the journal reference and the DOI. All the figures and tables can be found at http://cms-results.web.cern.ch/cms-results/public-results/publications/FSQ-13-009 (CMS Public Pages)
CODIT: Code Editing with Tree-Based Neural Models
Creators: name: Chakraborty, Saikat
name: Ding, Yangruibo
name: Allamanis, Miltiadis
name: Ray, Baishakhi
Publisher: name: arXiv
Year: 2018
Subjects: subject: Software Engineering (cs.SE)
subject: FOS: Computer and information sciences

description: The way developers edit day-to-day code tends to be repetitive, often using existing code elements. Many researchers have tried to automate repetitive code changes by learning from specific change templates which are applied to limited scope. The advancement of deep neural networks and the availability of vast open-source evolutionary data opens up the possibility of automatically learning those templates from the wild. However, deep neural network based modeling for code changes and code in general introduces some specific problems that needs specific attention from research community. For instance, compared to natural language, source code vocabulary can be significantly larger. Further, good changes in code do not break its syntactic structure. Thus, deploying state-of-the-art neural network models without adapting the methods to the source code domain yields sub-optimal results. To this end, we propose a novel tree-based neural network system to model source code changes and learn code change patterns from the wild. Specifically, we propose a tree-based neural machine translation model to learn the probability distribution of changes in code. We realize our model with a change suggestion engine, CODIT, and train the model with more than 24k real-world changes and evaluate it on 5k patches. Our evaluation shows the effectiveness of CODITin learning and suggesting patches. CODIT can also learn specific bug fix pattern from bug fixing patches and can fix 25 bugs out of 80 bugs in Defects4J.
Radio-wave communication with chaos
Creators: name: Ren, Hai-Peng
name: Zheng, Wu-Yun
name: Grebogi, Celso
Publisher: name: arXiv
Year: 2018
Subjects: subject: Signal Processing (eess.SP)
subject: Chaotic Dynamics (nlin.CD)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Physical sciences

description: The invariance of the Lyapunov exponent of a chaotic signal as it propagates along a wireless transmission channel provides a theoretical base for the application of chaos in wireless communication. In additive Gaussian channel, the chaotic signal is proved to be the optimal coherent communication waveform in the sense of using the very simple matched filter to obtain the maximum signal-to-noise ratio. The properties of chaos can be used to reduce simply and effectively the Inter-Symbol Interference (ISI) and to achieve low bit error rate in the wireless communication system. However, chaotic signals need very wide bandwidth to be transmitted in the practical channel, which is difficult for the practical transducer or antenna to convert such a broad band signal. To solve this problem, in this work, the chaotic signal is applied to a radio-wave communication system, and the corresponding coding and decoding algorithms are proposed. A hybrid chaotic system is used as the pulse-shaping filter to obtain the baseband signal, and the corresponding matched filter is used at the receiver, instead of the conventional low-pass filter, to maximize the signal-to-noise ratio. At the same time, the symbol judgment threshold determined by the chaos property is used to reduce the Inter-Symbol Interference (ISI) effect. Simulations and virtual channel experiments show that the radio-wave communication system using chaos obtains lower bit error rate in the multi-path transmission channel compared with the traditional radio-wave communication system using Binary Phase Shift Keying (BPSK) modulation technology and channel equalization.
description: 6 pages 8 figures
Dynamical phase transitions in the two-dimensional transverse-field Ising model
Creators: name: Hashizume, Tomohiro
name: McCulloch, Ian P.
name: Halimeh, Jad C.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Quantum Gases (cond-mat.quant-gas)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We investigate two separate notions of dynamical phase transitions in the two-dimensional nearest-neighbor transverse-field Ising model on a square lattice using matrix product states and a new \textit{hybrid} infinite time-evolving block decimation algorithm, where the model is implemented on an infinitely long cylinder with a finite diameter along which periodic boundary conditions are employed. Starting in an ordered initial state, our numerical results suggest that quenches below the dynamical critical point give rise to a ferromagnetic long-time steady state with the Loschmidt return rate exhibiting \textit{anomalous} cusps even when the order parameter never crosses zero. Within the accessible timescales of our numerics, quenches above the dynamical critical point suggest a paramagnetic long-time steady state with the return rate exhibiting \textit{regular} cusps connected to zero crossings of the order parameter. Additionally, our simulations indicate that quenching slightly above the dynamical critical point leads to a coexistence region where both anomalous and regular cusps appear in the return rate. Quenches from the disordered phase further confirm our main conclusions. Our work supports the recent finding that anomalous cusps arise only when local spin excitations are the energetically dominant quasiparticles. Our results are accessible in modern Rydberg experiments.
description: 9 pages, 6 figures, journal article
Raumaktualisierung. Spiele in der ephemeren Stadt
Creators: name: Höfler, Carolin
Publisher: name: ICOMOS – Hefte des Deutschen Nationalkomitees
Year: 2024

description: ICOMOS – Hefte des Deutschen Nationalkomitees, Bd. 80 (2021): ICOMOS – Hefte des Deutschen Nationalkomitees
Agriotes passosi Platia y Serrano 2002
Creators: name: Zapata, José Luis
name: Sánchez-Ruiz, Antonio
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Elateridae
Agriotes
Agriotes passosi

description: Agriotes passosi Platia y Serrano, 2002
 Distribución; España, Portugal.
 ESPAÑA
 EXTREMADURA; Badajoz.
 PORTUGAL
 R. ALGARVE; Faro.
 Nuevo registro; Primera localización para España en
 Extremadura, provincia de Badajoz: 1 ♂, Cabeza de
 Vaca, 9.8.2012, J. Sáez leg. (JLZ).
description: Published as part of Zapata, José Luis & Sánchez-Ruiz, Antonio, 2015, Nuevas aportaciones al catálogo de la familia Elateridae (Coleoptera) en la Península Ibérica e Islas Baleares, III., pp. 153-194 in Arquivos Entomolóxicos 13 on page 171, DOI: 10.5281/zenodo.12714609
Boundaries of relative factor graphs and subgroup classification for automorphisms of free products
Creators: name: Guirardel, Vincent
name: Horbez, Camille
Publisher: name: arXiv
Year: 2019
Subjects: subject: Group Theory (math.GR)
subject: Geometric Topology (math.GT)
subject: FOS: Mathematics

description: Given a countable group $G$ splitting as a free product $G=G_1\ast\dots\ast G_k\ast F_N$, we establish classification results for subgroups of the group $Out(G,\mathcal{F})$ of all outer automorphisms of $G$ that preserve the conjugacy classes of each $G_i$. We show that every finitely generated subgroup $H\subseteq Out(G,\mathcal{F})$ either contains a relatively fully irreducible automorphism, or else it virtually preserves the conjugacy class of a proper free factor relative to the decomposition (the finite generation hypothesis on $H$ can be dropped for $G=F_N$, or more generally when $G$ is toral relatively hyperbolic). In the first case, either $H$ virtually preserves a nonperipheral conjugacy class in $G$, or else $H$ contains an atoroidal automorphism. The key geometric tool to obtain these classification results is a description of the Gromov boundaries of relative versions of the free factor graph $\mathrm{FF}$ and the $\mathcal{Z}$-factor graph $\mathcal{Z}\mathrm{F}$, as spaces of equivalence classes of arational trees (respectively relatively free arational trees). We also identify the loxodromic isometries of $\mathrm{FF}$ with the fully irreducible elements of $Out(G,\mathcal{F})$, and loxodromic isometries of $\mathcal{Z}\mathrm{F}$ with the fully irreducible atoroidal outer automorphisms.
description: v2: Final version. Accepted in Geometry & Topology
Be/Coming City. Performing Arts als Formate von Raumerkundungen
Creators: name: Deuflhard, Amelie
Publisher: name: ICOMOS – Hefte des Deutschen Nationalkomitees
Year: 2024

description: ICOMOS – Hefte des Deutschen Nationalkomitees, Bd. 80 (2021): ICOMOS – Hefte des Deutschen Nationalkomitees
Wer weiß, wie man ein zeitgenössisches Theater oder ein Theater für morgen baut? Vom Auszug aus den Theaterhäusern an brachliegende Orte
Creators: name: Menting, Annette
Publisher: name: ICOMOS – Hefte des Deutschen Nationalkomitees
Year: 2024

description: ICOMOS – Hefte des Deutschen Nationalkomitees, Bd. 80 (2021): ICOMOS – Hefte des Deutschen Nationalkomitees
Body distribution of SiO2–Fe3O4 core-shell nanoparticles after intravenous injection and intratracheal instillation
Creators: name: Smulders, Stijn
name: Ashwini Ketkar-Atre
name: Luyts, Katrien
name: Vriens, Hanne
name: Nobre, Sonia De Sousa
name: Rivard, Camille
name: Landuyt, Kirsten Van
name: Baken, Stijn
name: Smolders, Erik
name: Golanski, Luana
name: Manosij Ghosh
name: Vanoirbeek, Jeroen
name: Himmelreich, Uwe
name: Hoet, Peter Hm
Publisher: name: Taylor & Francis
Year: 2016
Subjects: subject: Biophysics
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences

description: Nano-silicon dioxide (SiO2) is used nowadays in several biomedical applications such as drug delivery and cancer therapy, and is produced on an industrial scale as additive to paints and coatings, cosmetics and food. Data regarding the long-term biokinetics of SiO2 engineered nanoparticles (ENPs) is lacking. In this study, the whole-body biodistribution of SiO2 core-shell ENPs containing a paramagnetic core of Fe3O4 was investigated after a single exposure via intravenous injection or intratracheal instillation in mice. The distribution and accumulation in different organs was evaluated for a period of 84 days using several techniques, including magnetic resonance imaging, inductively coupled plasma mass spectrometry, X-ray fluorescence and X-ray absorption near edge structure spectroscopy. We demonstrated that intravenously administered SiO2 ENPs mainly accumulate in the liver, and are retained in this tissue for over 84 days. After intratracheal instillation, an almost complete particle clearance from the lung was seen after 84 days with distribution to spleen and kidney. Furthermore, we have strong evidence that the ENPs retain their original core-shell structure during the whole observation period. This work gives an insight into the whole-body biodistribution of SiO2 ENPs and will provide guidance for further toxicity studies.
On-chip thermometry for microwave optomechanics implemented in a nuclear demagnetization cryostat
Creators: name: Zhou, X.
name: Cattiaux, D.
name: Gazizulin, R. R.
name: Luck, A.
name: Maillet, O.
name: Crozes, T.
name: Motte, J-F.
name: Bourgeois, O.
name: Fefferman, A.
name: Collin, E.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We report on microwave optomechanics measurements performed on a nuclear adiabatic demagnetization cryostat, whose temperature is determined by accurate thermometry from below 500$~μ$K to about 1$~$Kelvin. We describe a method for accessing the on-chip temperature, building on the blue-detuned parametric instability and a standard microwave setup. The capabilities and sensitivity of both the experimental arrangement and the developed technique are demonstrated with a very weakly coupled silicon-nitride doubly-clamped beam mode of about 4$~$MHz and a niobium on-chip cavity resonating around 6$~$GHz. We report on an unstable intrinsic driving force in the coupled microwave-mechanical system acting on the mechanics that appears below typically 100$~$mK. The origin of this phenomenon remains unknown, and deserves theoretical input. It prevents us from performing reliable experiments below typically 10-30$~$mK; however no evidence of thermal decoupling is observed, and we propose that the same features should be present in all devices sharing the microwave technology, at different levels of strengths. We further demonstrate empirically how most of the unstable feature can be annihilated, and speculate how the mechanism could be linked to atomic-scale two level systems. The described microwave/microkelvin facility is part of the EMP platform, and shall be used for further experiments within and below the millikelvin range.
description: 14 pages with appendix; plus Erratum 17, 049901 (2022)
In vitro screening of metal oxide nanoparticles for effects on neural function using cortical networks on microelectrode arrays
Creators: name: Strickland, Jenna D.
name: Lefew, William R.
name: Crooks, James
name: Hall, Diana
name: Jayna NR Ortenzio
name: Dreher, Kevin
name: Shafer, Timothy J.
Publisher: name: Taylor & Francis
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Neuroscience
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer

description: Nanoparticles (NPs) may translocate to the brain following inhalation or oral exposures, yet higher throughput methods to screen NPs for potential neurotoxicity are lacking. The present study examined effects of 5 CeO2 (5– 1288 nm), and 4 TiO2 (6–142 nm) NPs and microparticles (MP) on network function in primary cultures of rat cortex on 12 well microelectrode array (MEA) plates. Particles were without cytotoxicity at concentrations ≤50 µg/ml. After recording 1 h of baseline activity prior to particle (3–50 µg/ml) exposure, changes in the total number of spikes (TS) and # of active electrodes (#AEs) were assessed 1, 24, and 48 h later. Following the 48 h recording, the response to a challenge with the GABAA antagonist bicuculline (BIC; 25 µM) was assessed. In all, particles effects were subtle, but 69 nm CeO2 and 25 nm TiO2 NPs caused concentration-related decreases in TS following 1 h exposure. At 48 h, 5 and 69 nm CeO2 and 25 and 31 nm TiO2 decreased #AE, while the two MPs increased #AEs. Following BIC, only 31 nm TiO2 produced concentration-related decreases in #AEs, while 1288 nm CeO2 caused concentration-related increases in both TS and #AE. The results indicate that some metal oxide particles cause subtle concentration-related changes in spontaneous and/or GABAA receptor-mediated neuronal activity in vitro at times when cytotoxicity is absent, and that MEAs can be used to screen and prioritize nanoparticles for neurotoxicity hazard.
The hydrodynamic atmospheric escape of 5 gas giant exoplanets with He absorption signal
Creators: name: David Sánchez Sánchez
name: Manuel Lampón González-Albo
name: J. Orell-Miquel
name: J. Sanz-Forcada
name: Manuel López Puertas
name: Alejandro Sánchez López
name: Alberto Peláez Torres
name: S. Czesla
name: E. Pallé
name: L. Nortmann
Publisher: name: Zenodo
Year: 2024

description: Many detected planets experience hydrodynamic atmospheric escape during some stage of their life. Most of those exoplanets are hot Jupiters and sub-Neptunes orbiting close to their stars. Traditionally, the escape in these evaporating planets has been studied by Lyman-α line absorption measurements taking by instruments from space. Very recently, a new window into atmospheric escape has been opened by using high-spectral resolution measurements of the He I triplet line at 10830 Å from the ground. In our Group we are carrying out a systematic study of the escape in the gas giant evaporating planet by analyzing their observed He triplet absorptions, having been studied so far seven exoplanets. Here, we expand that sample with the He triplet analysis in the planets TOI 1268 b, TOI 2018 b, HAT-P-11 b, HAT-P-67 b and HD 235088 b for which this absorption has been recently detected. We analyze these observations using a 1D hydrodynamic model with spherical symmetry of the atmosphere together with a non-local thermodynamic model of the He population in the triplet state. In addition, we perform high-resolution radiative transfer calculations of synthetic spectra for helium triplet lines and compare them with the measured absorption spectrum to recover information about the mass loss rate, temperature, and hydrogen-helium ratio of these. planets. In this poster we will present our results and contextualize them in the general study carried out to date.
1307.4077.pdf
Creators: name: Sasvari, Peter
Publisher: name: figshare
Year: 2016
Subjects: subject: Information Systems
subject: FOS: Computer and information sciences

description: Based on a conceptual model, this paper aims to explore the background of the decision-making process leading to the introduction of business information systems among enterprises in Hungary. Together with presenting the problems arising in the course of the implementation of such systems, their usage patterns are also investigated. A strong correlation is established between the size of an enterprise, the scope of its business activities and the range of the business information systems it applies.
Random trees in the boundary of Outer space
Creators: name: Kapovich, Ilya
name: Maher, Joseph
name: Pfaff, Catherine
name: Taylor, Samuel J.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Geometric Topology (math.GT)
subject: Group Theory (math.GR)
subject: FOS: Mathematics
subject: 20F65 (Primary), 57M, 37B, 37D (Secondary)

description: We prove that for the harmonic measure associated to a random walk on Out$(F_r)$ satisfying some mild conditions, a typical tree in the boundary of Outer space is trivalent and nongeometric. This answers a question of M. Bestvina.
description: 28 pages; minor typesetting issues corrected from the previous update. Accepted for publication in Geometry & Topology
Inner geometry of complex surfaces: a valuative approach
Creators: name: da Silva, André Belotto
name: Fantini, Lorenzo
name: Pichon, Anne
Publisher: name: arXiv
Year: 2019
Subjects: subject: Algebraic Geometry (math.AG)
subject: FOS: Mathematics
subject: Primary 32S25, 57M27, Secondary 32S55, 14B05, 13A18

description: Given a complex analytic germ $(X, 0)$ in $(\mathbb C^n, 0)$, the standard Hermitian metric of $\mathbb C^n$ induces a natural arc-length metric on $(X, 0)$, called the inner metric. We study the inner metric structure of the germ of an isolated complex surface singularity $(X,0)$ by means of an infinite family of numerical analytic invariants, called inner rates. Our main result is a formula for the Laplacian of the inner rate function on a space of valuations, the non-archimedean link of $(X,0)$. We deduce in particular that the global data consisting of the topology of $(X,0)$, together with the configuration of a generic hyperplane section and of the polar curve of a generic plane projection of $(X,0)$, completely determine all the inner rates on $(X,0)$, and hence the local metric structure of the germ. Several other applications of our formula are discussed in the paper.
description: Proposition 5.3 strengthened, exposition improved, some typos corrected, references updated. 42 pages and 10 figures. To appear in Geometry & Topology
Agriotes ustulatus Portugal-Espana
Creators: name: Zapata, José Luis
name: Sánchez-Ruiz, Antonio
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Elateridae
Agriotes
Agriotes ustulatus

description: Agriotes ustulatus (Schaller, 1783)
 Distribución; Albania, Alemania, Austria, Bélgica, Bielorrusia, Bosnia y Herzegovina, Bulgaria, Chequia, Croacia, Dinamarca, Eslovaquia, Eslovenia, España, Estonia, Finlandia, Francia, Georgia, Grecia, Holanda, Hungría, Italia, Liechtenstein, Lituania, Luxemburgo, Macedonia, Moldavia, Montenegro, Polonia, Rumanía, Rusia, Suiza, Ucrania. Irán, Turquía. Egipto, Marruecos, Ṫnez.
 Nota; Németh y Platia (2014) la refieren como nueva de Egipto.
description: Published as part of Zapata, José Luis & Sánchez-Ruiz, Antonio, 2015, Nuevas aportaciones al catálogo de la familia Elateridae (Coleoptera) en la Península Ibérica e Islas Baleares, III., pp. 153-194 in Arquivos Entomolóxicos 13 on page 172, DOI: 10.5281/zenodo.12714609
Der Friedrichstadt-Palast in Berlin: ein junges Denkmal mit Glamour
Creators: name: Kohlenbach, Ana
Publisher: name: ICOMOS – Hefte des Deutschen Nationalkomitees
Year: 2024

description: ICOMOS – Hefte des Deutschen Nationalkomitees, Bd. 80 (2021): ICOMOS – Hefte des Deutschen Nationalkomitees
Evolution des Theaters – Vom Brutalismus zum „Dritten Ort“
Creators: name: Fulir, Ivica
Publisher: name: ICOMOS – Hefte des Deutschen Nationalkomitees
Year: 2024

description: ICOMOS – Hefte des Deutschen Nationalkomitees, Bd. 80 (2021): ICOMOS – Hefte des Deutschen Nationalkomitees