cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Goodyera repens R. Br.
Creators: name: Konrad Lauber
name: Gerhart Wagner
name: Andreas Gygax
Publisher: name: Haupt Verlag
Year: 2018
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Asparagales
Orchidaceae
Goodyera
Goodyera repens

description: Goodyera repens (L.) R. Br.
Artbeschreibung: Stängel 10-25 cm hoch, dicht drüsig. Grundständige Blätter eiförmig, spitz, netzaderig, mit breitem Stiel, 1-3 cm lang, obere Blätter schmal-lanzettlich. Blütenstand schlank, einseitswendig, 10-15 blütig. Perigonblätter weiss bis grünlich, ca. 4 mm lang, aussen dicht drüsenhaarig, die 3 oberen (1 äusseres und 2 innere) zusammenneigend. Lippe weiss, etwa so lang wie die Perigonblätter, rinnig und schnabelartig abwärts gebogen, am Grund sackartig, aber ohne Sporn.
Blütezeit: 7-8
Standort und Verbreitung in der Schweiz: Moosreiche Föhren- und Fichtenwälder / kollin-montan(-subalpin) / CH
Verbreitung global: Eurosibirisch-nordamerikanisch
Ökologische Zeigerwerte nach Landolt & al. (2010)
BodenfaktorenKlimafaktorenSalztoleranzFeuchtezahl Fmässig trockenLichtzahl LschattigSalzzeichen--Reaktionszahl Rsauer (pH 3.5-6.5)Temperaturzahl Tmontan (Wälder mit Buche, Weisstanne, in den Zentralalpen mit Waldföhre)Nährstoffzahl Nsehr nährstoffarmKontinentalitätszahl Ksubkontinental (niedrige relative Luftfeuchtigkeit, grosse Temperaturschwankungen, eher kalte Winter)
Volksname Deutscher Name: Moosorchis, Netzblatt Nom français: Goodyère rampante Nome italiano: Godyera
description: Published as part of Konrad Lauber, Gerhart Wagner & Andreas Gygax, 2018, Flora Helvetica - Orchidaceae, pp. 1324-1362 in Flora Helvetica, Bern :Haupt Verlag on page 1342
Additional file 2: of Resolved phylogeny and biogeography of the root pathogen Armillaria and its gasteroid relative, Guyanagaster
Creators: name: Koch, Rachel
name: Wilson, Andrew
name: SĂŠnĂŠ, Olivier
name: Henkel, Terry
name: M. Aime
Publisher: name: Figshare
Year: 2017
Subjects: subject: Cell Biology
subject: Molecular Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Single-locus and multi-gene phylogenies for the six loci used. (PDF 3262 kb)
Cores of partitions in rectangles
Creators: name: Ayyer, Arvind
name: Sinha, Shubham
Publisher: name: arXiv
Year: 2022
Subjects: subject: Combinatorics (math.CO)
subject: Probability (math.PR)
subject: FOS: Mathematics
subject: 05A15, 05A16, 05A17, 60C05

description: For a positive integer $t \geq 2$, the $t$-core of a partition plays an important role in modular representation theory and combinatorics. We initiate the study of $t$-cores of partitions contained in an $r \times s$ rectangle. Our main results are as follows. We first give a simple formula for the number of partitions in the rectangle that are themselves $t$-cores and compute its asymptotics for large $r,s$. We then prove that the number of partitions inside the rectangle whose $t$-cores are a fixed partition $ρ$ is given by a product of binomial coefficients. Finally, we use this formula to compute the distribution of the $t$-core of a uniformly random partition inside the rectangle extending our previous work on all partitions of a fixed integer $n$ (Ann. Appl. Prob. 2023). In particular, we show that in the limit as $r,s \to \infty$ maintaining a fixed aspect ratio, we again obtain a Gamma distribution with the same shape parameter $α= (t-1)/2$ and rate parameter $β$ that depends on the aspect ratio.
description: 16 pages, 1 figure, minor improvements, final version
MOESM10 of Breast milk and in utero transmission of HIV-1 select for envelope variants with unique molecular signatures
Creators: name: Nakamura, Kyle
name: Heath, Laura
name: Sobrera, Edwin
name: Wilkinson, Thomas
name: Semrau, Katherine
name: Chipepo Kankasa
name: Tobin, Nicole
name: Webb, Nicholas
name: Benhur Lee
name: Thea, Donald
name: Kuhn, Louise
name: Mullins, James
name: Aldrovandi, Grace
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 10: Table S1. Identification of founder variants establishing infection. Infant infections that were inferred to be associated with single (S) or multiple (M) founder variants are shown, along with data used to make these determinations. Given the varying time between the first PCR-positive HIV test and virus population sampling in the infected infant, the wide range in the number of maternal and infant viral sequences sampled, and the unknown impact of early immune responses in selecting for mutations in the virus population, multiple criteria were considered when assessing whether transmission was associated with single or multiple founder variants. These criteria included (i) the number of phylogenetically informative mutation sites (InSites) computed by DIVEIN (doi: 10.2144/000113370 ), (ii) the minimum number of viral sublineages (multiple sequences sharing the same InSites), (iii) the estimated number of shared mutations defining these sublineages, (iv) whether insertions or deletions (InDels) were detected and shared across different sequences, (v) whether probable recombination was observed between sequences, and (vi) the number of maternal sequences found to represent the most recent common ancestor (MRCA) of the infant’s infection in phylogenetic trees. Multiple founders were inferred when the infant virus population emerged from more than a single MRCA in the mother, and/or when sublineages were detected that differed by 4 or more mutations (including InDels). Supporting these inferences were the detection of recombinants between sublineage sequences. The number of sublineages and mutations defining these sublineages were in some cases not precisely defined due to recombination. While in utero transmission showed a higher incidence of multiple founder virus outgrowth (67% in the IUT group versus 31% in the BMT group), our sampling was insufficient to determine a statistically-significant difference (p = 0.319, Fisher’s exact test).
A dynamical approach to the study of instability near Couette flow
Creators: name: Li, Hui
name: Masmoudi, Nader
name: Zhao, Weiren
Publisher: name: arXiv
Year: 2022
Subjects: subject: Analysis of PDEs (math.AP)
subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Mathematics
subject: FOS: Physical sciences

description: In this paper, we obtain the optimal instability threshold of the Couette flow for Navier-Stokes equations with small viscosity $ν>0$, when the perturbations are in the critical spaces $H^1_xL_y^2$. More precisely, we introduce a new dynamical approach to prove the instability for some perturbation of size $ν^{\frac{1}{2}-δ_0}$ with any small $δ_0>0$, which implies that $ν^{\frac{1}{2}}$ is the sharp stability threshold. In our method, we prove a transient exponential growth without referring to eigenvalue or pseudo-spectrum. As an application, for the linearized Euler equations around shear flows that are near the Couette flow, we provide a new tool to prove the existence of growing modes for the corresponding Rayleigh operator and give a precise location of the eigenvalues.
description: 68 pages, 2 figures. In this version, we change the title, rewrite the introduction, and add proof of the representation formula (5.12)
Telecom Quantum Photonic Interface for a $^{40}$Ca$^+$ Single-Ion Quantum Memory
Creators: name: Arenskötter, Elena
name: Bauer, Tobias
name: Kucera, Stephan
name: Bock, Matthias
name: Eschner, Jürgen
name: Becher, Christoph
Publisher: name: arXiv
Year: 2022
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Entanglement-based quantum networks require quantum photonic interfaces between stationary quantum memories and photons, enabling entanglement distribution. Here we present such a photonic interface, designed for connecting a $^{40}$Ca$^+$ single-ion quantum memory to the telecom C-band. The interface combines a memory-resonant, cavity-enhanced spontaneous parametric down-conversion (SPDC) photon pair source with bi-directional polarization-conserving quantum frequency conversion (QFC). We demonstrate preservation of high-fidelity entanglement during conversion, fiber transmission over up to 40 km and back-conversion to the memory wavelength. Even for the longest distance and bi-directional conversion the entanglement fidelity remains larger than 95 % (98 %) without (with) background correction.
MOESM10 of Breast milk and in utero transmission of HIV-1 select for envelope variants with unique molecular signatures
Creators: name: Nakamura, Kyle
name: Heath, Laura
name: Sobrera, Edwin
name: Wilkinson, Thomas
name: Semrau, Katherine
name: Chipepo Kankasa
name: Tobin, Nicole
name: Webb, Nicholas
name: Benhur Lee
name: Thea, Donald
name: Kuhn, Louise
name: Mullins, James
name: Aldrovandi, Grace
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Additional file 10: Table S1. Identification of founder variants establishing infection. Infant infections that were inferred to be associated with single (S) or multiple (M) founder variants are shown, along with data used to make these determinations. Given the varying time between the first PCR-positive HIV test and virus population sampling in the infected infant, the wide range in the number of maternal and infant viral sequences sampled, and the unknown impact of early immune responses in selecting for mutations in the virus population, multiple criteria were considered when assessing whether transmission was associated with single or multiple founder variants. These criteria included (i) the number of phylogenetically informative mutation sites (InSites) computed by DIVEIN (doi: 10.2144/000113370 ), (ii) the minimum number of viral sublineages (multiple sequences sharing the same InSites), (iii) the estimated number of shared mutations defining these sublineages, (iv) whether insertions or deletions (InDels) were detected and shared across different sequences, (v) whether probable recombination was observed between sequences, and (vi) the number of maternal sequences found to represent the most recent common ancestor (MRCA) of the infant’s infection in phylogenetic trees. Multiple founders were inferred when the infant virus population emerged from more than a single MRCA in the mother, and/or when sublineages were detected that differed by 4 or more mutations (including InDels). Supporting these inferences were the detection of recombinants between sublineage sequences. The number of sublineages and mutations defining these sublineages were in some cases not precisely defined due to recombination. While in utero transmission showed a higher incidence of multiple founder virus outgrowth (67% in the IUT group versus 31% in the BMT group), our sampling was insufficient to determine a statistically-significant difference (p = 0.319, Fisher’s exact test).
Gymnadenia conopsea R. Br.
Creators: name: Konrad Lauber
name: Gerhart Wagner
name: Andreas Gygax
Publisher: name: Haupt Verlag
Year: 2018
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Asparagales
Orchidaceae
Gymnadenia
Gymnadenia conopsea

description: Gymnadenia conopsea (L.) R. Br.
Artbeschreibung: Stängel 20-50 cm hoch, beblättert. Blätter lanzettlich, 5-20 mm breit, aufrecht, etwas rinnig. Blütenstand bis 15 cm lang, zylindrisch, dichtblütig. Blüten violettrot oder lila bis weisslich, wohlriechend. Seitliche äussere Perigonblätter abstehend, 5-6 mm lang, übrige zusammenneigend. Lippe etwa so lang wie die Perigonblätter, mit 3 +/- gleichen, gerundeten Abschnitten. Sporn dünn, sichelförmig abwärts gebogen, 1,5-2mal so lang wie der Fruchtknoten.
Blütezeit: 5-6
Standort und Verbreitung in der Schweiz: Feuchte Wiesen, lichte Wälder, trockene Weiden und Rasen / kollin-subalpin(-alpin) / CH
Verbreitung global: Eurosibirisch
Ökologische Zeigerwerte nach Landolt & al. (2010)
BodenfaktorenKlimafaktorenSalztoleranzFeuchtezahl Fmässig feucht; Feuchtigkeit stark wechselnd (mehr als ± 2 Stufen)Lichtzahl LhellSalzzeichen--Reaktionszahl Rneutral bis basisch (pH 5.5-8.5)Temperaturzahl Tunter-montan und ober-kollinNährstoffzahl NnährstoffarmKontinentalitätszahl Ksubozeanisch bis subkontinental (mittlere Luftfeuchtigkeit, mässige Temperaturschwankungen und mässig tiefe Wintertemperaturen)
Volksname Deutscher Name: Langspornige Handwurz, Mücken-Handwurz, Mücken-Nacktdrüse Nom français: Orchis moucheron Nome italiano: Manina rosea
description: Published as part of Konrad Lauber, Gerhart Wagner & Andreas Gygax, 2018, Flora Helvetica - Orchidaceae, pp. 1324-1362 in Flora Helvetica, Bern :Haupt Verlag on page 1342
Rainbow even cycles
Creators: name: Dong, Zichao
name: Xu, Zijian
Publisher: name: arXiv
Year: 2022
Subjects: subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: 05C35, 05C38

description: We prove that every family of (not necessarily distinct) even cycles $D_1, \dotsc, D_{\lfloor 1.2(n-1) \rfloor+1}$ on some fixed $n$-vertex set has a rainbow even cycle (that is, a set of edges from distinct $D_i$'s, forming an even cycle). This resolves an open problem of Aharoni, Briggs, Holzman and Jiang. Moreover, the result is best possible for every positive integer $n$.
description: 20 pages, 10 figures
MOESM2 of The fungal composition of natural biofinishes on oil-treated wood
Creators: name: Nieuwenhuijzen, Elke
name: Houbraken, Jos
name: Punt, Peter
name: Roeselers, Guus
name: Adan, Olaf
name: Samson, Robert
Publisher: name: Figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2: Table S2. Fungal isolates of each colony type with their culture collection numbers and GenBank accession numbers for the sequenced loci.
Gymnadenia odoratissima Rich.
Creators: name: Konrad Lauber
name: Gerhart Wagner
name: Andreas Gygax
Publisher: name: Haupt Verlag
Year: 2018
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Asparagales
Orchidaceae
Gymnadenia
Gymnadenia odoratissima

description: Gymnadenia odoratissima (L.) Rich.
Artbeschreibung: Ähnlich wie G. conopsea, aber nur 10-30 cm hoch, Blätter nur 2-6 mm breit, Blüten stark nach Vanille duftend, Lippe kürzer als die äusseren Perigonblätter, undeutlich 3teilig oder ganzrandig, Sporn höchstens so lang wie der Fruchtknoten.
Blütezeit: 6-7
Standort und Verbreitung in der Schweiz: Lichte Föhrenwälder, Kalkgeröll, Moorwiesen / (kollin-)montan-subalpin(-alpin) / A, J, ME, MZ
Verbreitung global: Europäisch
Ökologische Zeigerwerte nach Landolt & al. (2010)
BodenfaktorenKlimafaktorenSalztoleranzFeuchtezahl Ffrisch; Feuchtigkeit stark wechselnd (mehr als ± 2 Stufen)Lichtzahl LhellSalzzeichen--Reaktionszahl Rbasisch (pH 6.5->8.5)Temperaturzahl Tmontan (Wälder mit Buche, Weisstanne, in den Zentralalpen mit Waldföhre)Nährstoffzahl NnährstoffarmKontinentalitätszahl Ksubkontinental (niedrige relative Luftfeuchtigkeit, grosse Temperaturschwankungen, eher kalte Winter)
Volksname Deutscher Name: Wohlriechende Handwurz, Wohlriechende Nacktdrüse Nom français: Gymnadénie odorante Nome italiano: Manina profumata
description: Published as part of Konrad Lauber, Gerhart Wagner & Andreas Gygax, 2018, Flora Helvetica - Orchidaceae, pp. 1324-1362 in Flora Helvetica, Bern :Haupt Verlag on page 1342
On Laplacian eigenvalue equation with constant Neumann boundary data
Creators: name: Huang, Yong
name: Li, Qinfeng
name: Li, Qiuqi
name: Yao, Ruofei
Publisher: name: arXiv
Year: 2022
Subjects: subject: Analysis of PDEs (math.AP)
subject: FOS: Mathematics

description: Let $Ω$ be a bounded Lipshcitz domain in $\mathbb{R}^n$ and we study boundary behaviors of solutions to the Laplacian eigenvalue equation with constant Neumann data. \begin{align}
 \label{cequation0} \begin{cases} -Δu=cu\quad &\mbox{in $Ω$}\\ \frac{\partial u}{\partial ν}=-1\quad &\mbox{on $\partial Ω$}. \end{cases} \end{align}First, by using properties of Bessel functions and proving new inequalities on elementary symmetric polynomials, we obtain the following inequality for rectangular boxes, balls and equilateral triangles: \begin{align} \label{bbb}
 \lim_{c\rightarrow μ_2^-}c\int_{\partial Ω}u_c\, dσ\ge \frac{n-1}{n}\frac{P^2(Ω)}{|Ω|}, \end{align}with equality achieved only at cubes and balls. In the above, $u_c$ is the solution to the eigenvalue equation and $μ_2$ is the second Neumann Laplacian eigenvalue. Second, let $κ_1$ be the best constant for the Poincaré inequality with mean zero on $\partial Ω$, and we prove that $κ_1\le μ_2$, with equality holds if and only if $\int_{\partial Ω}u_c\, dσ>0$ for any $c\in (0,μ_2)$. As a consequence, $κ_1=μ_2$ on balls, rectangular boxes and equilateral triangles, and balls maximize $κ_1$ over all Lipschitz domains with fixed volume. As an application, we extend the symmetry breaking results from ball domains obtained in Bucur-Buttazzo-Nitsch[J. Math. Pures Appl., 2017], to wider class of domains, and give quantitative estimates for the precise breaking threshold at balls and rectangular boxes. It is a direct consequence that for domains with $κ_1<μ_2$, the above boundary limit inequality is never true, while whether it is valid for domains on which $κ_1=μ_2$ remains open.
description: A revised version compared to the previous one
MOESM2 of The fungal composition of natural biofinishes on oil-treated wood
Creators: name: Nieuwenhuijzen, Elke
name: Houbraken, Jos
name: Punt, Peter
name: Roeselers, Guus
name: Adan, Olaf
name: Samson, Robert
Publisher: name: Figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2: Table S2. Fungal isolates of each colony type with their culture collection numbers and GenBank accession numbers for the sequenced loci.
Vision-Based Robust Lane Detection and Tracking under Different Challenging Environmental Conditions
Creators: name: Sultana, Samia
name: Ahmed, Boshir
name: Paul, Manoranjan
name: Islam, Muhammad Rafiqul
name: Ahmad, Shamim
Publisher: name: arXiv
Year: 2022
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: Lane marking detection is fundamental for both advanced driving assistance systems. However, detecting lane is highly challenging when the visibility of a road lane marking is low due to real-life challenging environment and adverse weather. Most of the lane detection methods suffer from four types of challenges: (i) light effects i.e., shadow, glare of light, reflection etc.; (ii) Obscured visibility of eroded, blurred, colored and cracked lane caused by natural disasters and adverse weather; (iii) lane marking occlusion by different objects from surroundings (wiper, vehicles etc.); and (iv) presence of confusing lane like lines inside the lane view e.g., guardrails, pavement marking, road divider etc. Here, we propose a robust lane detection and tracking method with three key technologies. First, we introduce a comprehensive intensity threshold range (CITR) to improve the performance of the canny operator in detecting low intensity lane edges. Second, we propose a two-step lane verification technique, the angle based geometric constraint (AGC) and length-based geometric constraint (LGC) followed by Hough Transform, to verify the characteristics of lane marking and to prevent incorrect lane detection. Finally, we propose a novel lane tracking technique, by defining a range of horizontal lane position (RHLP) along the x axis which will be updating with respect to the lane position of previous frame. It can keep track of the lane position when either left or right or both lane markings are partially and fully invisible. To evaluate the performance of the proposed method we used the DSDLDE [1] and SLD [2] dataset with 1080x1920 and 480x720 resolutions at 24 and 25 frames/sec respectively. Experimental results show that the average detection rate is 97.55%, and the average processing time is 22.33 msec/frame, which outperform the state of-the-art method.
description: 19 pages, 11 figures, submitted to IEEE Access
Additional file 1: Table S1. of Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study
Creators: name: Dae-Wook Kang
name: Adams, James
name: Gregory, Ann
name: Borody, Thomas
name: Chittick, Lauren
name: Fasano, Alessio
name: Khoruts, Alexander
name: Geis, Elizabeth
name: Maldonado, Juan
name: McDonough-Means, Sharon
name: Pollard, Elena
name: Roux, Simon
name: Sadowsky, Michael
name: Lipson, Karen
name: Sullivan, Matthew
name: J. Caporaso
name: Krajmalnik-Brown, Rosa
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Computational Biology

description: Characteristics of study participants and their medical and diet history. All values are median ± median absolute deviation (MAD). p values are either by Mann-Whitney U test or Fisher’s exact probability test. n.s., not-significant. Table S2. Percent days of no stool, stool hardness, and softness based on the daily stool record (DSR) and the Bristol Stool Form Scale (p values by two-tailed Wilcoxon signed-rank test). Table S3. Adverse effects. (PDF 72 kb)
Additional file 1 of Ridle for sparse regression with mandatory covariates with application to the genetic assessment of histologic grades of breast cancer
Creators: name: Zhai, Jing
name: Chiu-Hsieh Hsu
name: Z. Daye
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Marine Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Proof of theoretical results. This file includes the proofs of Theorems 1â  3 in â  Methodsâ   section. (210 KB PDF)
MOESM1 of The fungal composition of natural biofinishes on oil-treated wood
Creators: name: Nieuwenhuijzen, Elke
name: Houbraken, Jos
name: Punt, Peter
name: Roeselers, Guus
name: Adan, Olaf
name: Samson, Robert
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Table S1. The total CFU concentration and the Aureobasidium CFU percentage of each wood sample (r. lins. oil = raw linseed oil, st. lins. oil = raw linseed oil, underlined numbers = estimated number, CFU count below 10).
Characterizing superradiant dynamics in atomic arrays via a cumulant expansion approach
Creators: name: Rubies-Bigorda, Oriol
name: Ostermann, Stefan
name: Yelin, Susanne F.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Ordered atomic arrays with subwavelength lattice spacing emit light collectively. For fully inverted atomic arrays, this results in an initial burst of radiation and a fast build up of coherences between the atoms at initial times. Based on a cumulant expansion of the equations of motion, we derive exact analytical expressions for the emission properties and numerically analyze the full many-body problem resulting in the collective decay process for unprecedented system sizes of up to a few hundred atoms. We benchmark the cumulant expansion approach and show that it correctly captures the cooperative dynamics resulting in superradiance. For fully inverted arrays, this allows us to extract the scaling of the superradiant peak with particle number. For partially excited arrays where no coherences are shared among atoms, we also determine the critical number of excitations required for the emergence of superradiance in one- and two-dimensional geometries. In addition, we study the robustness of superradiance in the case of non-unit filling and position disorder.
description: 13 pages, 7 figures
Additional file 1: Table S1. of Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study
Creators: name: Dae-Wook Kang
name: Adams, James
name: Gregory, Ann
name: Borody, Thomas
name: Chittick, Lauren
name: Fasano, Alessio
name: Khoruts, Alexander
name: Geis, Elizabeth
name: Maldonado, Juan
name: McDonough-Means, Sharon
name: Pollard, Elena
name: Roux, Simon
name: Sadowsky, Michael
name: Lipson, Karen
name: Sullivan, Matthew
name: J. Caporaso
name: Krajmalnik-Brown, Rosa
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Mental Health
subject: Computational Biology

description: Characteristics of study participants and their medical and diet history. All values are median ± median absolute deviation (MAD). p values are either by Mann-Whitney U test or Fisher’s exact probability test. n.s., not-significant. Table S2. Percent days of no stool, stool hardness, and softness based on the daily stool record (DSR) and the Bristol Stool Form Scale (p values by two-tailed Wilcoxon signed-rank test). Table S3. Adverse effects. (PDF 72 kb)
Hammarbya paludosa Kuntze
Creators: name: Konrad Lauber
name: Gerhart Wagner
name: Andreas Gygax
Publisher: name: Haupt Verlag
Year: 2018
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Asparagales
Orchidaceae
Hammarbya
Hammarbya paludosa

description: Hammarbya paludosa (L.) Kuntze
Artbeschreibung: 3-12 cm hoch, am Grund mit 2-3 ovalen, aufrechten Blättern, das oberste (grösste) höchstens 3 cm lang. Blütenstand sehr schlank, 1,5-5 cm lang, allseitswendig. Blütenstellung wie bei Malaxis. Blüten gelblich bis grün. Perigonblätter abstehend, lanzettlich, die äusseren stumpf, 2,5-3 mm lang, die inneren zugespitzt, 1,5-2 mm lang. Lippe lanzettlich, ungeteilt, etwa so lang wie die inneren Perigonblätter. Kein Sporn.
Blütezeit: 7-8
Standort und Verbreitung in der Schweiz: Hochmoore / montan / ZG, SZ, SG
Verbreitung global: Eurosibirisch-nordamerikanisch
Ökologische Zeigerwerte nach Landolt & al. (2010)
BodenfaktorenKlimafaktorenSalztoleranzFeuchtezahl F--Lichtzahl L--Salzzeichen--Reaktionszahl R--Temperaturzahl T--Nährstoffzahl N--Kontinentalitätszahl K--
Volksname Deutscher Name: Sumpf-Weichwurz, Sumpf-Weichkraut Nom français: Malaxis des marais Nome italiano: Hammarbia
description: Published as part of Konrad Lauber, Gerhart Wagner & Andreas Gygax, 2018, Flora Helvetica - Orchidaceae, pp. 1324-1362 in Flora Helvetica, Bern :Haupt Verlag on page 1342
Additional file 1 of Ridle for sparse regression with mandatory covariates with application to the genetic assessment of histologic grades of breast cancer
Creators: name: Zhai, Jing
name: Chiu-Hsieh Hsu
name: Z. Daye
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Marine Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Proof of theoretical results. This file includes the proofs of Theorems 1â  3 in â  Methodsâ   section. (210 KB PDF)
Zabrachypus primus Cushman 1920
Creators: name: Varga, Oleksandr
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Ichneumonidae
Zabrachypus
Zabrachypus primus

description: Zabrachypus primus Cushman, 1920 (Fig. 15)
Records. Ukraine (Kasparyan, 1981).
Material examined. Kherson Reg.: 1 ♂, Askania-Nova, SN, 27.v.1974; 1 ♀, Black Sea BR, Solenoozernyi area, SN, 25–27.v.1976, leg. V. Tolkanitz; 1 ♀, Black Sea BR, Ivano-Rybalchanskyi area, SN, 1.vi.1974; 1 ♀, idem, SN, 22.viii.1978; 1 ♀, idem, SN, 11.vi.1980; 1 ♂, 1 ♀, idem, SN, 10.vi.1983, leg. A. Kotenko; 1 ♀, Black Sea BR, SN, 17.viii.1982, leg. O. Radchenko; Kyiv Reg.: 1 ♀, Kyiv, Lysa Gora, SN, 4.vii.1970; Lugansk Reg.: 1 ♀, Provalskyi Steppe Reserve, SN, 21.vi.1979; Odesa Reg.: 1 ♀, Plavni, SN, 11.v.1979; 1 ♂, Savranske, SN, 6.viii.2004, leg. A. Kotenko; Zaporizhzhya Reg.: 3 ♀, 1 ♂, Staroberdyanskyi Reserve, SN, 10.v.1978, leg. V. Tolkanitz; 2 ♀, 2–3 km S of Vasylivka, SN, 9.vii.1980; 1 ♀, Bogatyr, SN, 14.vi.1983, leg. A. Kotenko.
Distribution. Holarctic; Ukraine: Kherson, Kyiv, Lugansk, Odesa, and Zaporizhzhya Regs.
Biology. CEMF, PS. May–August.
description: Published as part of Varga, Oleksandr, 2019, Taxonomy and distribution of pimpline parasitoids (Hymenoptera, Ichneumonidae, Pimplinae) in Ukraine, pp. 1-65 in Zootaxa 4693 (1) on page 45, DOI: 10.11646/zootaxa.4693.1.1, http://zenodo.org/record/3529018
Pseudopipra Kirwan, David, Gregory, Jobling, Steinheimer & Brito, 2016, gen. nov.
Creators: name: Kirwan, Guy M.
name: David, Normand
name: Gregory, Steven M. S.
name: Jobling, James A.
name: Steinheimer, Frank D.
name: Brito, Guilherme Renzo Rocha
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Aves
Passeriformes
Pipridae
Pseudopipra

description: Pseudopipra, gen. nov.
Type species: Parus pipra Linnaeus, 1758. Systema Naturae, 10th edn., vol. 1, p. 190, based on the ‘Cacototol’ of Seba (1735, Thesauri 2: 102, pl. 95, fig. 5), ‘in Indiis’ [= Surinam per Zimmer 1929: 87].
Diagnosis. Adult male is the only all-black piprid with a brilliant white crown and nape. Some of the black feathers of the underparts and mantle may have slight violaceous or steel blue gloss. Females and immature males are mainly uniform olive-green with slightly paler underparts, and are diagnosed by dark red irides and grey cast to crown and headsides. Relatively small-bodied, with short tail and unmodified primaries. The latter correlates with the fact that this species does not produce mechanical sounds (unlike species currently included in Pipra).
Etymology: from the Greek ψευδος = pseudos [falsehood], and genus Pipra Linnaeus 1764, [manakin], = the false Pipra, a name that highlights both the original confusion that surrounded the correct name for this species (see Hellmayr 1929; Zimmer 1929) and, more recently, the correct generic name.
Gender: feminine.
Monotypic.
Known species: Pseudopipra pipra (Linnaeus, 1758).
description: Published as part of Kirwan, Guy M., David, Normand, Gregory, Steven M. S., Jobling, James A., Steinheimer, Frank D. & Brito, Guilherme Renzo Rocha, 2016, The mistaken manakin: a new genus-group name for Parus pipra Linnaeus, 1758 (Aves: Passeriformes: Pipridae), pp. 89-94 in Zootaxa 4121 (1) on page 93, DOI: 10.11646/zootaxa.4121.1.9, http://zenodo.org/record/267732
MOESM1 of The fungal composition of natural biofinishes on oil-treated wood
Creators: name: Nieuwenhuijzen, Elke
name: Houbraken, Jos
name: Punt, Peter
name: Roeselers, Guus
name: Adan, Olaf
name: Samson, Robert
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Table S1. The total CFU concentration and the Aureobasidium CFU percentage of each wood sample (r. lins. oil = raw linseed oil, st. lins. oil = raw linseed oil, underlined numbers = estimated number, CFU count below 10).
Resource-Efficient Deep Learning: A Survey on Model-, Arithmetic-, and Implementation-Level Techniques
Creators: name: Lee, JunKyu
name: Mukhanov, Lev
name: Molahosseini, Amir Sabbagh
name: Minhas, Umar
name: Hua, Yang
name: del Rincon, Jesus Martinez
name: Dichev, Kiril
name: Hong, Cheol-Ho
name: Vandierendonck, Hans
Publisher: name: arXiv
Year: 2021
Subjects: subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: Deep learning is pervasive in our daily life, including self-driving cars, virtual assistants, social network services, healthcare services, face recognition, etc. However, deep neural networks demand substantial compute resources during training and inference. The machine learning community has mainly focused on model-level optimizations such as architectural compression of deep learning models, while the system community has focused on implementation-level optimization. In between, various arithmetic-level optimization techniques have been proposed in the arithmetic community. This article provides a survey on resource-efficient deep learning techniques in terms of model-, arithmetic-, and implementation-level techniques and identifies the research gaps for resource-efficient deep learning techniques across the three different level techniques. Our survey clarifies the influence from higher to lower-level techniques based on our resource-efficiency metric definition and discusses the future trend for resource-efficient deep learning research.
description: Submitted to ACM Computing Surveys
Additional file 4 of Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study
Creators: name: Dae-Wook Kang
name: Adams, James
name: Gregory, Ann
name: Borody, Thomas
name: Chittick, Lauren
name: Fasano, Alessio
name: Khoruts, Alexander
name: Geis, Elizabeth
name: Maldonado, Juan
name: McDonough-Means, Sharon
name: Pollard, Elena
name: Roux, Simon
name: Sadowsky, Michael
name: Lipson, Karen
name: Sullivan, Matthew
name: J. Caporaso
name: Krajmalnik-Brown, Rosa
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology

description: Supplementary text. (PDF 123 kb)
Herminium monorchis R. Br.
Creators: name: Konrad Lauber
name: Gerhart Wagner
name: Andreas Gygax
Publisher: name: Haupt Verlag
Year: 2018
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Asparagales
Orchidaceae
Herminium
Herminium monorchis

description: Herminium monorchis (L.) R. Br.
Artbeschreibung: Stängel 10-25 cm hoch, am Grund meist mit 2, selten bis 5 lanzettlichen, bis 10 cm langen Blättern. Blütenstand schlank zylindrisch, allseitswendig, vielblütig. Blüten grünlich-gelb. Perigonblätter +/- nach vorn gerichtet, die inneren ca. 4 mm lang, länger als die äusseren. Lippe so lang wie die inneren Perigonblätter, 3teilig, mit langem, schmalem Mittelabschnitt, am Grund mit deutlicher Vertiefung, aber ohne Sporn.
Blütezeit: 5-7
Standort und Verbreitung in der Schweiz: Feuchte Wiesen / kollin-subalpin / CH (selten M)
Verbreitung global: Eurasiatisch
Ökologische Zeigerwerte nach Landolt & al. (2010)
BodenfaktorenKlimafaktorenSalztoleranzFeuchtezahl Ffeucht; Feuchtigkeit stark wechselnd (mehr als ± 2 Stufen)Lichtzahl LhellSalzzeichen--Reaktionszahl Rneutral bis basisch (pH 5.5-8.5)Temperaturzahl Tmontan (Wälder mit Buche, Weisstanne, in den Zentralalpen mit Waldföhre)Nährstoffzahl NnährstoffarmKontinentalitätszahl Ksubozeanisch bis subkontinental (mittlere Luftfeuchtigkeit, mässige Temperaturschwankungen und mässig tiefe Wintertemperaturen)
Volksname Deutscher Name: Einorchis, Einknollige Herminie Nom français: Herminium à un tubercule, Orchis musc Nome italiano: Orchide ad un bulbo
description: Published as part of Konrad Lauber, Gerhart Wagner & Andreas Gygax, 2018, Flora Helvetica - Orchidaceae, pp. 1324-1362 in Flora Helvetica, Bern :Haupt Verlag on page 1342
Bagauda Bergroth 1903
Creators: name: Joshi, Nikhil U.
name: Boyane, Swapnil S.
name: Ghate, Hemant V.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Reduviidae
Bagauda

description: Bagauda Bergroth, 1903
Bagauda Bergroth, 1903: 12 (original description), Distant (1903: 208) (redescription, fauna of British India, Ceylon and Burma), McAtee & Malloch (1926: 138) (diagnosis, new species), Wygodzinsky (1966: 94) (monograph), Maldonado (1990: 98) (catalogue), Rédei & Tsai (2010: 16) (nomenclature), Chandra et al. (2017: 121) (diagnosis, review of Indian species).
description: Published as part of Joshi, Nikhil U., Boyane, Swapnil S. & Ghate, Hemant V., 2022, Redescription of Bagauda avidus (Hemiptera: Heteroptera: Reduviidae: Emesinae) with notes on other species of the genus in India, pp. 361-372 in Zootaxa 5188 (4) on page 362, DOI: 10.11646/zootaxa.5188.4.4, http://zenodo.org/record/7095575
Spin-Dependent Graph Neural Network Potential for Magnetic Materials
Creators: name: Yu, Hongyu
name: Zhong, Yang
name: Hong, Liangliang
name: Xu, Changsong
name: Ren, Wei
name: Gong, Xingao
name: Xiang, Hongjun
Publisher: name: arXiv
Year: 2022
Subjects: subject: Computational Physics (physics.comp-ph)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Machine Learning (cs.LG)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: The development of machine learning interatomic potentials has immensely contributed to the accuracy of simulations of molecules and crystals. However, creating interatomic potentials for magnetic systems that account for both magnetic moments and structural degrees of freedom remains a challenge. This work introduces SpinGNN, a spin-dependent interatomic potential approach that employs the graph neural network (GNN) to describe magnetic systems. SpinGNN consists of two types of edge GNNs: Heisenberg edge GNN (HEGNN) and spin-distance edge GNN (SEGNN). HEGNN is tailored to capture Heisenberg-type spin-lattice interactions, while SEGNN accurately models multi-body and high-order spin-lattice coupling. The effectiveness of SpinGNN is demonstrated by its exceptional precision in fitting a high-order spin Hamiltonian and two complex spin-lattice Hamiltonians with great precision. Furthermore, it successfully models the subtle spin-lattice coupling in BiFeO3 and performs large-scale spin-lattice dynamics simulations, predicting its antiferromagnetic ground state, magnetic phase transition, and domain wall energy landscape with high accuracy. Our study broadens the scope of graph neural network potentials to magnetic systems, serving as a foundation for carrying out large-scale spin-lattice dynamic simulations of such systems.
description: 28 pages, 4 figures
Himantoglossum hircinum Spreng.
Creators: name: Konrad Lauber
name: Gerhart Wagner
name: Andreas Gygax
Publisher: name: Haupt Verlag
Year: 2018
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Asparagales
Orchidaceae
Himantoglossum
Himantoglossum hircinum

description: Himantoglossum hircinum (L.) Spreng.
Artbeschreibung: 30-80 cm hoch, mit länglich-eiförmigen bis lanzettlichen, den Stängel scheidig umfassenden Blättern. Blütenstand bis 30 cm lang, zylindrisch, locker, vielblütig, mit Bocksgeruch. Die 5 Perigonblätter einen halbkugeligen Helm bildend, grünlich, mit roten Nerven. Lippe 3teilig, Mittelabschnitt 20-60 mm lang, bandförmig, 2-3 mm breit, schraubig gedreht, meist zweispitzig, olivgrün bis lila, hinten weiss mit roten Flecken. Seitenabschnitte viel kürzer. Sporn kegelförmig, 3-4 mm lang.
Blütezeit: 5-6
Standort und Verbreitung in der Schweiz: Trockenrasen / kollin / J, M in Juranähe, VS
Verbreitung global: Westmediterran
Ökologische Zeigerwerte nach Landolt & al. (2010)
BodenfaktorenKlimafaktorenSalztoleranzFeuchtezahl Ftrocken; Feuchtigkeit mässig wechselnd (± 1-2 Stufen)Lichtzahl LhellSalzzeichen--Reaktionszahl Rbasisch (pH 6.5->8.5)Temperaturzahl Twarm-kollinNährstoffzahl NnährstoffarmKontinentalitätszahl Ksubozeanisch bis subkontinental (mittlere Luftfeuchtigkeit, mässige Temperaturschwankungen und mässig tiefe Wintertemperaturen)
Volksname Deutscher Name: Bocks-Riemenzunge Nom français: Orchis à odeur de bouc Nome italiano: Barbone
description: Published as part of Konrad Lauber, Gerhart Wagner & Andreas Gygax, 2018, Flora Helvetica - Orchidaceae, pp. 1324-1362 in Flora Helvetica, Bern :Haupt Verlag on page 1342
Machine Learning Wavefunction
Creators: name: Battaglia, Stefano
Publisher: name: arXiv
Year: 2022
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: This chapter introduces the main ideas and the most important methods for representing the electronic wavefunction through machine learning models. The wavefunction of a N-electron system is an incredibly complicated mathematical object, and models thereof require enough flexibility to properly describe the complex interactions between the particles, but at the same time a sufficiently compact representation to be useful in practice. Machine learning techniques offer an ideal mathematical framework to satisfy these requirements, and provide algorithms for their optimization in both supervised and unsupervised fashions. In this chapter, various examples of machine learning wavefunctions are presented and their strengths and weaknesses with respect to traditional quantum chemical approaches are discussed; first in theory, and then in practice with two case studies.
description: To be published in the upcoming book "Quantum Chemistry in the Age of Machine Learning", edited by P. Dral
Kirkwood-Dirac classical pure states
Creators: name: Xu, Jianwei
Publisher: name: arXiv
Year: 2022
Subjects: subject: Quantum Physics (quant-ph)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: Kirkwood-Dirac (KD) distribution is a representation of quantum states. Recently, KD distribution has been employed in many scenarios such as quantum metrology, quantum chaos and foundations of quantum theory. KD distribution is a quasiprobability distribution, and negative or nonreal elements may signify quantum advantages in certain tasks. A quantum state is called KD classical if its KD distribution is a probability distribution. Since most quantum information processings use pure states as ideal resources, then a key problem is to determine whether a quantum pure state is KD classical. In this paper, we provide some characterizations for the general structure of KD classical pure states. As an application of our results, we prove a conjecture raised by De Bièvre [Phys. Rev. Lett. 127, 190404 (2021)] which finds out all KD classical pure states for discrete Fourier transformation.
description: 11 pages, 5 figures. Comments are welcome!
Additional file 3: Figure S1. of Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study
Creators: name: Dae-Wook Kang
name: Adams, James
name: Gregory, Ann
name: Borody, Thomas
name: Chittick, Lauren
name: Fasano, Alessio
name: Khoruts, Alexander
name: Geis, Elizabeth
name: Maldonado, Juan
name: McDonough-Means, Sharon
name: Pollard, Elena
name: Roux, Simon
name: Sadowsky, Michael
name: Lipson, Karen
name: Sullivan, Matthew
name: J. Caporaso
name: Krajmalnik-Brown, Rosa
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Subscores of GI- and ASD-related symptoms in 18 children with ASD. Figure S2. Correlation between percentage change in GSRS and overall PGI-III scores (based on the data shown in Fig. 2a, b) for the 18 weeks of the study. Figure S3. Vineland developmental age (in years) for individual subscales and for the average of all subscales, measured at baseline and at the end of observation 4 months later. Figure S4. Stool microbiota changes in community richness with fecal microbiota transplant. Figure S5. Gut phageome taxonomy is still mostly unknown. Figure S6. Subscores of the PGI-III at end of treatment (week 10). Figure S7. Microbiota changes with fecal microbiota transplant based on swab samples (analog of Fig 3a–d). Figure S8. Stool microbiota changes with fecal microbiota transplant. Figure S9. Engraftment plots with four diversity metrics (stool samples). Figure S10. Stool microbiota changes with fecal microbiota transplant. (PDF 1964 kb)
Additional file 1: Table S1. of Novel Chlamydiales genotypes identified in ticks from Australian wildlife
Creators: name: Burnard, Delaney
name: Weaver, Haylee
name: Gillett, Amber
name: Loader, Joanne
name: Cheyne Flanagan
name: Polkinghorne, Adam
Publisher: name: Figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 60506 Virology

description: Summary of wildlife host and species, number and location of adult female Ixodidae ticks screened for Chlamydiales in this study. (DOCX 14 kb)