cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
6S-1 pRNA 9-mers are a prominent length species during outgrowth of Bacillus subtilis cells from extended stationary phase
Creators: name: Damm, Katrin
name: Klemm, Paul
name: Lechner, Marcus
name: Helmecke, Dominik
name: Hartmann, Roland K.
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Bacterial RNA polymerases (RNAP) utilize 6S RNAs as templates to synthesize ultrashort transcripts (up to ~14 nt), termed product RNAs (pRNAs), that play a key role in reversing the blockage of RNAP by 6S RNA. Here, we resolved the pRNA length profile of 6S-1 RNA from B. subtilis, a major model system for the study of 6S RNA biology, during outgrowth of cells from extended stationary phase. 9-mers were found to be a particularly abundant pRNA length species, followed by 8-/10-/11-mers and 13-/14-mers. Consistent with in vitro data from the Escherichia coli system, these findings support the mechanistic model according to which the housekeeping sigma factor (σ70 or σA) dissociates from 6S RNA:RNAP complexes upon synthesis of pRNA 9-mers, followed by final dissociation of 6S RNA and RNAP upon synthesis of longer pRNAs (13-/14-mers). Methodologically, the identification of such ultrashort RNAs in total cellular extracts by RNA-Seq is inefficient with standard protocols using adapter ligation to RNA 3’-ends for reverse transcription and PCR-based cDNA sequencing. Here, we demonstrate that ultrashort RNAs can instead be incorporated into RNA-Seq libraries by polyA-, polyC- and potentially also polyU-tailing of their 3’-ends. At positions where a non-tailing nucleotide is followed by one or more tailing nucleotides, an algorithm that integrates RNA-Seq results from at least two different 3’-end tailings allows one to approximate the fraction of read counts at such ambiguous positions. Finally, methodological biases and potential applications of our approach to other short RNAs are discussed.
"Teaching the Gospel to Law Students," Didaktikos: Journal of Theological Education 6.1 (2022): 8-10.
Creators: name: Korpman, Matthew
Publisher: name: Humanities Commons
Year: 2022

description: A short peer-reviewed essay exploring my pedagogical approach at teaching a required Introduction to New Testament course for students at a Criminal Justice program. It outlines creative ways to engage students in biblical material by focusing attention on those aspects of it that directly relate to the legal profession and sensibility.
Additional file 2 of The frequency of colorectal lesions in the first-degree relatives of patients with colorectal lesions among PERSIAN Guilan Cohort Study population (PGCS)
Creators: name: Matin, Somaieh
name: Joukar, Farahnaz
name: Maroufizadeh, Saman
name: Asgharnezhad, Mehrnaz
name: Karimian, Paridokht
name: Mansour-Ghanaei, Fariborz
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Cancer

description: Supplementary Material 2
Gold solidus of Leo I
Creators: name: Hamerow, Helena
Publisher: name: University of Oxford
Year: 2021
Subjects: Archaeology

description: Gold solidus of Emperior Leo I, Constantinople (457-74). Wgt. 4.461 grammes.obv. DNLEOPE RPETAVG. Head of Emperor 3/4 r. wearing helmet with diadem and two hanging appendices behind; cuirass and mantle, hand raised to shoulder height palm outwards fingers curled at left, something quite elaborate on right shoulder.rev. VICTORI AAVGGGE. In exergue C NOB. Victory facing l., holding cross standard. Star on field on left.Good yellow gold, in very fresh condition, upper relief only slightly worn. On both sides a broad plain rim finished with punch-work along edge. Mayer Coll. Card Index states this could with found with the silver bracelet M 7385.Lab Results:Meas. dens. gm/cc: 18.6Exp. dens.: 19Surface analysis
AUGcontext DB: a comprehensive catalog of the mRNA AUG initiator codon context across eukaryotes
Creators: name: Osnaya, Vincent G.
name: Gómez-Romero, Laura
name: Moreno-Hagelsieb, Gabriel
name: Hernández, Greco
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: The mRNA translation defines the composition of the cell proteome in all forms of life and diseases. In this process, precise selection of the mRNA translation initiation site (TIS) is crucial, as it establishes the correct open reading frame for triplet decoding. We have gathered and curated all published TIS consensus context sequences. We also included the TIS consensus context from novel 538 fungal genomes available from NCBI’s RefSeq database. To do so, we wrote ad hoc programs in PERL to find and extract the TIS for each annotated gene, plus ten bases upstream and three downstream. For each genome, the sequences around the TIS of each gene were obtained, and the consensus was further calculated according to the Cavener rules and by the LOGOS algorithm. We created AUGcontext DB, a portal with a comprehensive collection of TIS context sequences across eukaryotes in a range from −10 to + 6. The compilation covers species of 30 vertebrates, 17 invertebrates, 25 plants, 14 fungi, and 11 protists studied in silico; 23 experimental studies; data on biotechnology; and the discovery of 8 diseases associated with specific mutations. Additionally, TIS context sequences of cellular IRESs were included. AUGcontext DB belongs to the National Institute of Cancer (Instituto Nacional de Cancerología, INCan), Mexico, and is freely available at http://108.161.138.77:8096/. Our catalogue allows us to do comparative studies between species, may help improve the diagnosis of certain diseases, and will be key to maximize the production of recombinant proteins.
Additional file 3 of Genetic dissection and genomic prediction for pork cuts and carcass morphology traits in pig
Creators: name: Xie, Lei
name: Qin, Jiangtao
name: Rao, Lin
name: Cui, Dengshuai
name: Tang, Xi
name: Chen, Liqing
name: Xiao, Shijun
name: Zhang, Zhiyan
name: Huang, Lusheng
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3: Table S3. Significant loci associated with pork cuts and carcass morphology traits by GWAS after genotype imputation.
S-1 pRNA 9-mers are a prominent length species during outgrowth of Bacillus subtilis cells from extended stationary phase
Creators: name: Damm, Katrin
name: Klemm, Paul
name: Lechner, Marcus
name: Helmecke, Dominik
name: Hartmann, Roland K.
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Bacterial RNA polymerases (RNAP) utilize 6S RNAs as templates to synthesize ultrashort transcripts (up to ~ 14 nt), termed product RNAs (pRNAs), that play a key role in reversing the blockage of RNAP by 6S RNA. Here we resolved the pRNA length profile of 6 S-1 RNA from Bacillus subtilis, a major model system for the study of 6S RNA biology, during outgrowth of cells from extended stationary phase. 9-mers were found to be a particularly abundant pRNA length species, followed by 8/10/11-mers and 13/14-mers. Consistent with in vitro data from the Escherichia coli system, these findings support the mechanistic model according to which the housekeeping sigma factor (σ70 or σA) dissociates from 6S RNA:RNAP complexes upon synthesis of pRNA 9-mers, followed by final dissociation of 6S RNA and RNAP upon synthesis of longer pRNAs (13/14-mers). Methodologically, the identification of such ultrashort RNAs in total cellular extracts by RNA-Seq is inefficient with standard protocols using adapter ligation to RNA 3’-ends for reverse transcription and PCR-based cDNA sequencing. Here, we demonstrate that ultrashort RNAs can instead be incorporated into RNA-Seq libraries by polyA, polyC and potentially also polyU tailing of their 3’-ends. At positions where a non-tailing nucleotide is followed by one or more tailing nucleotides, an algorithm that integrates RNA-Seq results from at least two different 3’-end tailings allows one to approximate the fraction of read counts at such ambiguous positions. Finally, methodological biases and potential applications of our approach to other short RNAs are discussed.
Glass vessel rim
Creators: name: Hamerow, Helena
Publisher: name: University of Oxford
Year: 2021
Subjects: Archaeology

description: Piece of rim of glass vessel, plain rounded form, slightly splayed diam. No decoration. Glass clear golden brown with few air bubbles.Might be one of the nine pieces from Gilton M 7187? Or a piece from the missing Faversham vessel, 2.4.85.2, which was a toed and ribbed palm cup.
Effectiveness and context dependency of social norm interventions: five field experiments on nudging pro-environmental and pro-social behavior
Creators: name: Mundt, Daria
name: Batzke, Marlene Clara Lucia
name: Bläsing, Thanee Madlen
name: Gomera Deaño, Sandro
name: Helfers, Anna
Publisher: name: Universität Kassel
Year: 2024
Subjects: subject: behavioral change
subject: social norms
subject: field experiment
subject: waste reduction
subject: injunctive norm
subject: descriptive norm
subject: proscriptive norm
subject: prescriptive norm
subject: 150
subject: Verhaltensmodifikation
subject: Soziale Norm
subject: Feldversuch
subject: Nachhaltigkeit
subject: Nudge
subject: Verbraucherverhalten

description: Gefördert durch den Publikationsfonds der Universität Kassel
Two glass counters
Creators: name: Hamerow, Helena
Publisher: name: University of Oxford
Year: 2021
Subjects: Archaeology

description: 2 glass counters or studs, diam. 1.7cm. Both of dark blue translucent glass with whorl of marvered white trails making a spiral pattern. Flat top, rounded edges, hollow underside where the stud has been taken off a working tool.
AUGcontext DB: a comprehensive catalogue of the mRNA AUG initiator codon context across eukaryotes
Creators: name: Osnaya, Vincent G.
name: Gómez-Romero, Laura
name: Moreno-Hagelsieb, Gabriel
name: Hernández, Greco
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: The mRNA translation defines the composition of the cell proteome in all forms of life and diseases. In this process, precise selection of the mRNA translation initiation site (TIS) is crucial, as it establishes the correct open reading frame for triplet decoding. We have gathered and curated all published TIS consensus context sequences. We also included the TIS consensus context from novel 538 fungal genomes available from NCBI’s RefSeq database. To do so, we wrote ad hoc programs in PERL to find and extract the TIS for each annotated gene, plus ten bases upstream and three downstream. For each genome, the sequences around the TIS of each gene were obtained and the consensus was further calculated according to the Cavener rules and by the LOGOS algorithm. We created AUGcontext DB, a portal with a comprehensive collection of TIS context sequences across eukaryotes in a range from -10 to + 6. The compilation covers species of 30 vertebrates, 17 invertebrates, 25 plants, 14 fungi, and 11 protists studied in silico; 23 experimental studies; data on biotechnology; and the discovery of 8 diseases associated with specific mutations. Additionally, TIS context sequences of cellular IRESs was included. AUGcontext DB belongs to the National Institute of Cancer (Instituto Nacional de Cancerología, INCan), Mexico, and is freely available at http://108.161.138.77:8096/. Our catalogue allows to do comparative studies between species, may help improve the diagnosis of certain diseases, and will be key to maximize the production of recombinant proteins.
Forty-nine yellow glass beads
Creators: name: Hamerow, Helena
Publisher: name: University of Oxford
Year: 2021
Subjects: Archaeology

description: 49 yellow beads: all opaque.4 spiral wound cylindrical, 1 pentagonal, 2 double cylinders, 2 cylinders, rest barrels and rings of varying size.Accession number correctly attributed to iron chain links from Kingston grave 302 (according to Gatty Slips). SCH incorrectly used M 6249 for a number of sets of Unporvenanced glass beads. – D.H.
Defining the methanogenic SECIS element in vivo by targeted mutagenesis
Creators: name: Peiter, Nils
name: Einert, Anna
name: Just, Pauline
name: Jannasch, Frida
name: Najdovska, Marija
name: Rother, Michael
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: Geology
subject: FOS: Earth and related environmental sciences
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Computational Biology

description: In all domains of life, Archaea, Eukarya and Bacteria, the unusual amino acid selenocysteine (Sec) is co-translationally incorporated into proteins by recoding a UGA stop codon to a sense codon. A secondary structure on the mRNA, the selenocysteine insertion sequence (SECIS), is required, but its position, secondary structure and binding partner(s) are not conserved across the tree of life. Thus far, the nature of archaeal SECIS elements has been derived mainly from sequence analyses. A recently developed in vivo reporter system was used to study the structure–function relationships of SECIS elements in Methanococcus maripaludis. Through targeted mutagenesis, we defined the minimal functional SECIS element, the parts of the SECIS where structure and not the identity of the bases are relevant for function, and identified two conserved -and invariant- adenines that are most likely to interact with the other factor(s) of the Sec recoding machinery. Finally, we demonstrated the functionality of SECIS elements in the 5`-untranslated region of the mRNA and identified a potential mechanism of SECIS repositioning in the vicinity of the UGA for efficient selenocysteine insertion.
sj-pdf-1-prq-10.1177_10659129211006196 – Supplemental material for Affective Polarization and Support for the U.S. Supreme Court
Creators: name: Armaly, Miles T.
name: Enders, Adam M.
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 160607 International Relations
subject: FOS: Political science

description: Supplemental material, sj-pdf-1-prq-10.1177_10659129211006196 for Affective Polarization and Support for the U.S. Supreme Court by Miles T. Armaly and Adam M. Enders in Political Research Quarterly
Twenty-four blue glass beads
Creators: name: Hamerow, Helena
Publisher: name: University of Oxford
Year: 2021
Subjects: Archaeology

description: 24 blue beads:1 opaque turquoise barrel, 1 translucent green-blue ring, 1 opaque powder blue barrel, 1 opaque jade green barrel, 2 bright turquoise (1 streaked red) melon shaped, rest mainly bright turquoise and barrels.Accession number correctly attributed to iron chain links from Kingston grave 302 (according to Gatty Slips). SCH incorrectly used M 6249 for a number of sets of Unporvenanced glass beads. – D.H.
sj-pdf-1-eqs-10.1177_87552930211009530 – Supplemental material for Adoption of seismic-resistant techniques in reconstructed housing in the aftermath of Nepal’s 2015 Gorkha earthquake
Creators: name: Hendriks, Eefje
name: Opdyke, Aaron
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 99999 Engineering not elsewhere classified
subject: FOS: Other engineering and technologies

description: Supplemental material, sj-pdf-1-eqs-10.1177_87552930211009530 for Adoption of seismic-resistant techniques in reconstructed housing in the aftermath of Nepal’s 2015 Gorkha earthquake by Eefje Hendriks and Aaron Opdyke in Earthquake Spectra
Eighty red glass beads
Creators: name: Hamerow, Helena
Publisher: name: University of Oxford
Year: 2021
Subjects: Archaeology

description: 80 Opaque red beads:6 biconicals, 1 spiral, 1 melon-seed shaped, 1 hexagonal, 3 double cylinders, rest mainly barrel shaped.Accession number correctly attributed to iron chain links from Kingston grave 302 (according to Gatty Slips). SCH incorrectly used M 6249 for a number of sets of Unporvenanced glass beads. – D.H.
Alternative splicing of the Snap23 microexon is regulated by MBNL, QKI, and RBFOX2 in a tissue-specific manner and is altered in striated muscle diseases
Creators: name: Gentile, Gabrielle M.
name: Blue, R. Eric
name: Goda, Grant A.
name: Guzman, Bryan B.
name: Szymanski, Rachel A.
name: Lee, Eunice Y.
name: Engels, Nichlas M.
name: Hinkle, Emma R.
name: Wiedner, Hannah J.
name: Bishop, Aubriana N.
name: Harrison, Jonathan T.
name: Zhang, Hua
name: Wehrens, Xander H.T.
name: Dominguez, Daniel
name: Giudice, Jimena
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences

description: The reprogramming of alternative splicing networks during development is a hallmark of tissue maturation and identity. Alternative splicing of microexons (small, genomic regions ≤ 51 nucleotides) functionally regulate protein-protein interactions in the brain and is altered in several neuronal diseases. However, little is known about the regulation and function of alternatively spliced microexons in striated muscle. Here, we investigated alternative splicing of a microexon in the synaptosome-associated protein 23 (Snap23) encoded gene. We found that inclusion of this microexon is developmentally regulated and tissue-specific, as it occurs exclusively in adult heart and skeletal muscle. The alternative region is highly conserved in mammalian species and encodes an in-frame sequence of 11 amino acids. Furthermore, we showed that alternative splicing of this microexon is mis-regulated in mouse models of heart and skeletal muscle diseases. We identified the RNA-binding proteins (RBPs) quaking (QKI) and RNA binding fox-1 homolog 2 (RBFOX2) as the primary splicing regulators of the Snap23 microexon. We found that QKI and RBFOX2 bind downstream of the Snap23 microexon to promote its inclusion, and this regulation can be escaped when the weak splice donor is mutated to the consensus 5’ splice site. Finally, we uncovered the interplay between QKI and muscleblind-like splicing regulator (MBNL) as an additional, but minor layer of Snap23 microexon splicing control. Our results are one of the few reports detailing microexon alternative splicing regulation during mammalian striated muscle development.
sj-docx-1-anp-10.1177_00048674211009623 – Supplemental material for Distinct clinical manifestations of obsessive-compulsive disorder are associated with cortical thickness alteration
Creators: name: Shan, Hai-di
name: Liu, Ya-fei
name: Zhao, Qing
name: Wang, Yi
name: Wang, Yong-ming
name: Cheung, Eric F
name: Chan, Raymond C
name: Wang, Zhen
Publisher: name: SAGE Journals
Year: 2021
Subjects: Psychology not elsewhere classified
Psychiatry (incl. Psychotherapy)
Neuroscience

description: Supplemental material, sj-docx-1-anp-10.1177_00048674211009623 for Distinct clinical manifestations of obsessive-compulsive disorder are associated with cortical thickness alteration by Hai-di Shan, Ya-fei Liu, Qing Zhao, Yi Wang, Yong-ming Wang, Eric F Cheung, Raymond C Chan and Zhen Wang in Australian & New Zealand Journal of Psychiatry
"Re-Evaluating Ellen White's Misunderstood Idea of the Shaking," Adventist Today 31.2 (2023): 27-29.
Creators: name: Korpman, Matthew
Publisher: name: Humanities Commons
Year: 2023

description: Within the Seventh-day Adventist Church, a common conception is that Ellen White, one of the denomination’s three founders and a 19th-century female theologian, warned of a singular time in the future when a theological “shaking” would occur. However, by comparing all possible references to the word “shaking” (as well as associated ideas) in Ellen White’s written corpus, one discovers an even more nuanced theological concept.
Inter-Laboratory Study Of The Reproducibility Of The Bovine Corneal Opacity And Permeability Assay: Investigations Of Solid Test Substances
Creators: name: Kolle, Susanne N.
name: Norman, Kimberley
name: Rabe, Hans
name: Landsiedel, Robert
Publisher: name: Zenodo
Year: 2012
Subjects: eye irritation
BCOP
alternative methods
NAM
Opacitometer

description: The Bovine Corneal Opacity and Permeability Assay (BCOP) is an ex vivo assay which may be used to assess the eye irritation potential of new chemicals and finished products. The BCOP assay has been accepted by several regulatory agencies for the identification severe and corrosive ocular irritants, replacing the rabbit eye test. According to OECD Test Guideline 437 two treatment protocols may be used; one for liquids and one for solids. Solids are tested as 20% (w/v) solutions or suspensions in deionized water. Freshly excised bovine corneas are mounted in special corneal holders and are treated with the 20% (w/v) test material dilutions for four hours at approximately 32°C. Changes in corneal opacity are measured using an opacitometer, and impairment of the corneal barrier function is determined by measuring fluorescein passage through the corneas. Histological evaluation of the treated corneas may be used to determine the degree and depth of injury at the tissue level. In this study, the reference standard solids recommended in the OECD TG 437 were tested in an inter-laboratory study. Overall, the results from the evaluation of solids were highly congruent between the two laboratories and to the historical data and for several substances histological evaluation improved the understanding of eye irritation effect. However, for chlorhexidine and dibenzoyl-L-tartaric acid there were inter-laboratory differences which were further evaluated. For chorhexidine, differences in results were attributed to different sources of the chemical. This study demonstrates the reproducibility of the BCOP assay when evaluating solid test substances. In parallel, the study compared the opacity scores from a newly developed opacitometer (BASF-OP2.0) to those of the standard device (OP-KIT). The comparison between the BASF-OP2.0 and OP-KIT demonstrated that the BASF-OP2.0 showed very little variability and overall corresponded very well with the OP-KIT values.
Additional file 1 of Gender differences in the association of individual and contextual socioeconomic status with hypertension in 230 Latin American cities from the SALURBAL study: a multilevel analysis
Creators: name: Coelho, Débora Moraes
name: de Souza Andrade, Amanda Cristina
name: Silva, Uriel Moreira
name: Lazo, Mariana
name: Slesinski, S. Claire
name: Quistberg, Alex
name: Diez-Roux, Ana V.
name: de Lima Friche, Amélia Augusta
name: Caiaffa, Waleska Teixeira
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 1: Figure S1. Flowchart of the process used to define the sample used in the paper. Table S1. Characteristics of the national surveys included in our sample. Figure S2. Associations of individual-, city- and sub-city-level education, with hypertension country-stratified. SALURBAL study (N = 109,184). Table S2. Associations between Individual-, city- and sub-city-level education with hypertension for models containing an interaction term between individual-level education with city- and sub-city education. Table S3. Sensitivity analyses: associations between individual-, sub-city- and city-level education with hypertension (self-reported vs. objectively measured).
Supplemental Material, sj-pdf-1-vet-10.1177_03009858211011941 - Ductal Plate Malformations in Captive Snakes
Creators: name: Patania, Olivia M.
name: Troan, Brigid V.
name: Cullen, John M.
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: FOS: Clinical medicine
subject: 70706 Veterinary Medicine
subject: FOS: Veterinary sciences

description: Supplemental Material, sj-pdf-1-vet-10.1177_03009858211011941 for Ductal Plate Malformations in Captive Snakes by Olivia M. Patania, Brigid V. Troan and John M. Cullen in Veterinary Pathology
Supplemental Material, sj-pdf-2-ang-10.1177_00033197211012537 - Two-Year Clinical Outcomes According to Pre-PCI TIMI Flow Grade and Reperfusion Timing in Non-STEMI After Newer-Generation Drug-Eluting Stents Implantation
Creators: name: Kim, Yong Hoon
name: Her, Ae-Young
name: Jeong, Myung Ho
name: Byeong-Keuk Kim
name: Hong, Sung-Jin
name: Seunghwan Kim
name: Chul-Min Ahn
name: Kim, Jung-Sun
name: Young-Guk Ko
name: Donghoon Choi
name: Myeong-Ki Hong
name: Yangsoo Jang
Publisher: name: SAGE Journals
Year: 2021
Subjects: Cardiology

description: Supplemental Material, sj-pdf-2-ang-10.1177_00033197211012537 for Two-Year Clinical Outcomes According to Pre-PCI TIMI Flow Grade and Reperfusion Timing in Non-STEMI After Newer-Generation Drug-Eluting Stents Implantation by Yong Hoon Kim, Ae-Young Her, Myung Ho Jeong, Byeong-Keuk Kim, Sung-Jin Hong, Seunghwan Kim, Chul-Min Ahn, Jung-Sun Kim, Young-Guk Ko, Donghoon Choi, Myeong-Ki Hong and Yangsoo Jang in Angiology
"Satan’s Flying Machines: Ellen White and Airplanes," Adventist Today 31.1 (2023): 21-25.
Creators: name: Korpman, Matthew
Publisher: name: Humanities Commons
Year: 2023

description: The White Estate early on was aware of a report by some Adventists that claimed, as eyewitnesses, that Ellen White had (during a camp-meeting during May 1-10 of 1908) declared that: “Any one killed from an aeroplane would be lost.” Although considered apocryphal by the Estate when first heard, it turns out that this statement is likely not fictional or a distortion, but rather represents an accurate summary of Ellen White’s views (albeit, perhaps a paraphrase rather than an exact quote). With the digitization, increased access, and release of her unpublished writings, it is now very clear that White had written enough in her authentic writings to give witness that this remembered “apocryphal” quotation of hers accurately reflects her views from the time.
sj-pdf-2-smm-10.1177_09622802211011187 - Supplemental material for Survival models induced by zero-modified power series discrete frailty: Application with a melanoma data set
Creators: name: Molina, Katy C
name: Calsavara, Vinicius F
name: Tomazella, Vera D
name: Milani, Eder A
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 111708 Health and Community Services
subject: FOS: Health sciences
subject: 111099 Nursing not elsewhere classified
subject: 160807 Sociological Methodology and Research Methods
subject: FOS: Sociology

description: Supplemental material, sj-pdf-2-smm-10.1177_09622802211011187 for Survival models induced by zero-modified power series discrete frailty: Application with a melanoma data set by Katy C Molina, Vinicius F Calsavara, Vera D Tomazella and Eder A Milani in Statistical Methods in Medical Research
Rock crystal 'ball'
Creators: name: Hamerow, Helena
Publisher: name: University of Oxford
Year: 2021
Subjects: Archaeology

description: Gatty Slip: Crystal ball, supposed to have been used in divination, more probably an ornament from the binding of a book? Saxon. Locality unknown. [sketch]Mayer Index Card: '1 Crystal Ball... locality unknown. 1 1/2 in. long.' [sketch]Gatty Slip sketch indicates that indicates it is not a \ball\" in the 6th-century sense. – B.B."
Sixty-four green glass beads
Creators: name: Hamerow, Helena
Publisher: name: University of Oxford
Year: 2021
Subjects: Archaeology

description: 64 opaque green beads:1 hexagonal mid green, 1 rectangular mid green, 30 bright grass green beads, mostly barrels: rest mid-green mostly barrels.According to the Gatty Slip, the accession no. M 7289 was used for a flint arrowhead from Irland. – B.B.
title: Open-Capsule-Devices: will they bring an end to PCO?
Creators: name: Werner, Liliana
name: Kramer, Gregory
name: Mamalis, Nick
Publisher: name: German Medical Science GMS Publishing House
Year: 2017
Subjects: subject: 610 Medical sciences; Medicine

description: Purpose: It has been hypothesized that intraocular lens (IOL) designs that maintain an open or expanded capsular bag are associated with better bag clarity.     In this presentation, devices that have been designed to minimize or prevent the development of anterior and/or posterior capsule opacification[for full text, please go to the a.m. URL]
description: 30. Internationaler Kongress der Deutschen Ophthalmochirurgen
sj-pdf-1-asp-10.1177_00037028211012722 - Supplemental material for Disposable Coverslip for Rapid Throughput Screening of Malaria Using Attenuated Total Reflection spectroscopy
Creators: name: Veettil, Thulya Chakkumpulakkal Puthan
name: Kochan, Kamila
name: Edler, Karen J.
name: De Bank, Paul
name: Heraud, Philip
name: Wood, Bayden R.
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 99999 Engineering not elsewhere classified
subject: FOS: Other engineering and technologies

description: Supplemental material, sj-pdf-1-asp-10.1177_00037028211012722 for Disposable Coverslip for Rapid Throughput Screening of Malaria Using Attenuated Total Reflection spectroscopy by Thulya Chakkumpulakkal Puthan Veettil, Kamila Kochan, Karen J. Edler, Paul De Bank, Philip Heraud and Bayden R. Wood in Applied Spectroscopy
Additional file 1 of Astrocytic accumulation of tau fibrils isolated from Alzheimer’s disease brains induces inflammation, cell-to-cell propagation and neuronal impairment
Creators: name: Eltom, Khalid
name: Mothes, Tobias
name: Libard, Sylwia
name: Ingelsson, Martin
name: Erlandsson, Anna
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Marine Biology
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences

description: Online Resource 1. List of all antibodies and dyes used in this study.
sj-pdf-1-ajs-10.1177_03635465211010466 – Supplemental material for Amnion and Umbilical Cord–Derived Products in Sports Medicine: From Basic Science to Clinical Application
Creators: name: Fortier, Lisa A.
name: Cercone, Marta
name: Keller, Laura E.
name: Delco, Michelle L.
name: Becktell, Lilia
name: Wells, Kristina V.
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 110314 Orthopaedics
subject: FOS: Clinical medicine
subject: 110604 Sports Medicine
subject: FOS: Health sciences
subject: 110323 Surgery

description: Supplemental material, sj-pdf-1-ajs-10.1177_03635465211010466 for Amnion and Umbilical Cord–Derived Products in Sports Medicine: From Basic Science to Clinical Application by Lisa A. Fortier, Marta Cercone, Laura E. Keller, Michelle L. Delco, Lilia Becktell and Kristina V. Wells in The American Journal of Sports Medicine
Phylogenetic Analyses Of Quasars And Galaxi
Creators: name: Fraix-Burnet Didier
name: Marziani Paola
name: D'Onofrio Mauro
Publisher: name: Zenodo
Year: 2017
Subjects: Cladistic analysis
QSO evolution
Galaxy evolution

description: We have performed a cladistic analysis on two samples of 215 and 85 low-z quasars (z < 0.7) which were studied in several previous works and which offer a satisfactory coverage of the Eigenvector 1-derived main sequence. The data encompass accurate measurements of observational parameters which represent key aspects associated with the structural diversity of quasars. Cladistics is able to group sources radiating at higher Eddington ratios, as well as to separate radio-quiet (RQ) and radio-loud (RL) quasars. The analysis suggests a black hole mass threshold for powerful radio emission and also properly distinguishes core-dominated and lobe-dominated quasars, in accordance with the basic tenet of RL unification schemes. Considering that black hole mass provides a sort of ``arrow of time'' of nuclear activity, our result suggests that the ontogeny of black holes is represented by their monotonic increase in mass. More massive radio-quiet Population B sources at low-z become a more evolved counterpart of Population A i.e., wind dominated sources to which the ``local'' Narrow-Line Seyfert 1s belong. In addition to the analysis of luminous type 1 AGN and low-z quasars, we have applied cladistic techniques to a sample of viz. 4000 galaxies of the WINGS survey which are mostly quiescent or host modest star formation activity and low-luminosity AGNs. Preliminary results are given in this poster.
Alternative splicing of the Snap23 microexon is regulated by MBNL, QKI, and RBFOX2 in a tissue-specific manner and is mis-spliced in striated muscle diseases
Creators: name: Gentile, Gabrielle M.
name: Blue, R. Eric
name: Goda, Grant A.
name: Guzman, Bryan B.
name: Szymanski, Rachel A.
name: Lee, Eunice Y.
name: Engels, Nichlas M.
name: Hinkle, Emma R.
name: Wiedner, Hannah J.
name: Bishop, Aubriana N.
name: Harrison, Jonathan T.
name: Zhang, Hua
name: Wehrens, Xander H.T.
name: Dominguez, Daniel
name: Giudice, Jimena
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences

description: The reprogramming of alternative splicing networks during development is a hallmark of tissue maturation and identity. Alternative splicing of microexons (small, genomic regions ≤ 51 nucleotides) functionally regulate protein-protein interactions in the brain and are mis-spliced in neuronal diseases. However, little is known about the regulation and function of alternatively spliced microexons in striated muscle. Here, we investigated alternative splicing of a microexon in the synaptosome-associated protein 23 (Snap23) encoded gene. We found that inclusion of this microexon is developmentally regulated and tissue-specific, as it occurs exclusively in adult heart and skeletal muscle. The alternative region is highly conserved in mammalian species and encodes an in-frame sequence of 11 amino acids. Furthermore, we showed that alternative splicing of this microexon is mis-regulated in mouse models of heart and skeletal muscle diseases. We identified the RNA-binding proteins (RBPs) quaking (QKI) and RNA binding fox-1 homolog 2 (RBFOX2) as the primary splicing regulators of the Snap23 microexon. We found that QKI and RBFOX2 bind downstream of the Snap23 microexon to promote its inclusion, and this regulation can be escaped when the weak splice donor is mutated to the consensus 5’ splice site. Finally, we uncovered the interplay between QKI and muscleblind-like splicing regulator (MBNL) as an additional, but minor layer of Snap23 microexon splicing control. Our results are one of the few reports detailing microexon alternative splicing regulation during mammalian striated muscle development.
"William Foy and the Apocrypha: Demonstrating Ellen White’s Early Belief in the Authority of 2 Esdras," Spectrum 51.2 (2023): 12-17.
Creators: name: Korpman, Matthew
Publisher: name: Humanities Commons
Year: 2023

description: An analysis of William Foy's visions are compared with Ellen White's, noting that the two shared the same vision. Both visions are ultimately traced to the apocryphal work of 2 Esdras, popular among Millerites, allowing us to analyze how both Foy and White utilized the Apocrypha in their visionary renditions. Furthermore, this analysis sheds light on how Ellen White conceived of the ability for prophets to commit error and what her own self-evaluation was when she referred to herself as a lesser light pointing to the Bible.
Fifty-seven amber beads
Creators: name: Hamerow, Helena
Publisher: name: University of Oxford
Year: 2021
Subjects: Archaeology

description: Gatty Slip: 'Fifty-eight amber beads from Anglo-Saxon graves: probably from various locations, & from Faussett & Rolfe Coll.'57 amber beads in decayed (yellow patinated) condition. Various shapes and sizes.
The symbols in the Marston Morse bookplate
Creators: name: Fern, Thomas S.
Publisher: name: University of Notre Dame
Year: 2018

description: The paper describes the development of a bookplate designed by the author to reflect Marston Morse's life. Below are the first two paragraphs of his paper.
It is my view that a bookplate should reflect the donor's interests

and accomplishments as well as the symbols of the library where the

collection is housed. The accomplishments and reputation of Marston
Morse are so great that my first task, after studying his life and career,

was to somehow narrow my choices from dozens of significant milestones

to a meaningful and manageable few.

Central to Marston Morse's life, of course, was his academic discipline,

where his creativity and unique contributions earned him international

respect as one of the world's greatest mathematicians. The bookplate

design, I thought:, must certainly reflect that fact.

The Hesburgh Library at the University of Notre Dame has a collection of Marston Morse related books.
Additional file 2 of Astrocytic accumulation of tau fibrils isolated from Alzheimer’s disease brains induces inflammation, cell-to-cell propagation and neuronal impairment
Creators: name: Eltom, Khalid
name: Mothes, Tobias
name: Libard, Sylwia
name: Ingelsson, Martin
name: Erlandsson, Anna
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Marine Biology
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences

description: Online Resource 2. Macro for quantification of astrocytes’ distant branching points.
WRITING THEIR FUTURE: HOW ACADEMIC WRITING SKILLS DRIVE SUCCESS IN STUDIES AND CAREERS FOR BACHELOR'S STUDENTS
Creators: name: Sayfiddinov, Izzatullakhon
Publisher: name: Zenodo
Year: 2024

description: Academic English is a critical skill that enables students, particularly those at the university level, to achieve academic success and effectively transition into professional settings. Unlike general English, academic English involves specialized vocabulary, formal tone, and complex sentence structures designed to convey complex ideas objectively and with precision. This article explores the significance of academic English in various stages of university study and highlights its benefits across professional fields, including business, economics, engineering, politics, healthcare, law, and science. Through real-life examples, we illustrate the challenges individuals face when lacking proficiency in academic English and emphasize the lifelong value of mastering these skills. For students, academic English offers a foundation for analytical thinking, persuasive communication, and adaptability—skills essential for navigating today’s knowledge-based economy and achieving success in their chosen careers.
Additional file 3 of Astrocytic accumulation of tau fibrils isolated from Alzheimer’s disease brains induces inflammation, cell-to-cell propagation and neuronal impairment
Creators: name: Eltom, Khalid
name: Mothes, Tobias
name: Libard, Sylwia
name: Ingelsson, Martin
name: Erlandsson, Anna
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Marine Biology
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences

description: Online Resource 3. Macro for quantification of intracellular Amytracker signal.
"Was Noadiah A ‘Trustworthy’ Prophet? The Demise of Prophecy in Second Temple Judaism," Zeitschrift für die Alttestamentliche Wissenschaft 135.1 (2023): 52-70.
Creators: name: Korpman, Matthew
Publisher: name: Humanities Commons
Year: 2023

description: According to popular scholarly consensus, the role of the classical prophets ceased following the rebuilding of Jerusalem during the Second Temple period. This paper will attempt to propose an explanation of 1 Maccabees’ comments about the cessation of prophecy by undertaking a careful and broad examination of the dynamics involved in the Hebrew Bible’s final chronological confrontation between a prophet and religious leader of Israel: Noadiah and Nehemiah. Attention will be given to exploring the basis for Nehemiah’s deliberate dismissal of prophecy and how his choices set a precedence for future leaders of Judah, culminating in the positions taken by the Hasmoneans. In conclusion, it will be argued that Nehemiah’s choice to elevate his own ability for insight above and against those who claimed a profession that typically was seen as granting exclusive access to such things, led to a gradual ostracization of prophets and a diminishing belief in their “trustworthiness.”
Glass bead
Creators: name: Hamerow, Helena
Publisher: name: University of Oxford
Year: 2021
Subjects: Archaeology

description: Opaque black glass spindle-whorl or bead, diam. 3.2cm. Flat underside, curved upper surface, with hole made by glass-maker. Marvered trail decoration on upper surface: broad yellow-green trail around basal circumference, and another around the hole. In between these bands, which are broad, narrower clear yellow trailing in dense zig-zags.No provenance given, no details. Very possibly from Sibertswold because very like others from this cemetery, Gr. 172??
sj-pdf-2-imr-10.1177_03000605211004039 - Supplemental material for Serum interleukin-30 level in patients with psoriasis and its correlation with psoriasis severity: a case-control study
Creators: name: Nergez Sabah Omar
name: Xinxin Long
name: Jiayi Xian
name: Henok Kessete Afewerky
name: Hussain, Saeed Ghulam
name: Xuebiao Peng
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 111708 Health and Community Services
subject: FOS: Health sciences
subject: Cardiology
subject: 110599 Dentistry not elsewhere classified
subject: FOS: Clinical medicine
subject: 110305 Emergency Medicine
subject: 110306 Endocrinology
subject: 110308 Geriatrics and Gerontology
subject: 110904 Neurology and Neuromuscular Diseases
subject: 111099 Nursing not elsewhere classified
subject: 111199 Nutrition and Dietetics not elsewhere classified
subject: 111299 Oncology and Carcinogenesis not elsewhere classified
subject: 110314 Orthopaedics
subject: 110604 Sports Medicine
subject: 110315 Otorhinolaryngology
subject: 111702 Aged Health Care
subject: 111403 Paediatrics
subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: 111799 Public Health and Health Services not elsewhere classified
subject: 110203 Respiratory Diseases
subject: 160807 Sociological Methodology and Research Methods
subject: FOS: Sociology
subject: 110323 Surgery

description: Supplemental material, sj-pdf-2-imr-10.1177_03000605211004039 for Serum interleukin-30 level in patients with psoriasis and its correlation with psoriasis severity: a case-control study by Nergez Sabah Omar, Xinxin Long, Jiayi Xian, Henok Kessete Afewerky, Saeed Ghulam Hussain and Xuebiao Peng in Journal of International Medical Research
Additional file 4 of Astrocytic accumulation of tau fibrils isolated from Alzheimer’s disease brains induces inflammation, cell-to-cell propagation and neuronal impairment
Creators: name: Eltom, Khalid
name: Mothes, Tobias
name: Libard, Sylwia
name: Ingelsson, Martin
name: Erlandsson, Anna
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Marine Biology
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences

description: Online Resource 4. Macro for quantification of Synaptophysin-positive puncta.
sj-pdf-1-jcb-10.1177_0271678X211010354 - Supplemental material for Connexin43 promotes angiogenesis through activating the HIF-1α/VEGF signaling pathway under chronic cerebral hypoperfusion
Creators: name: Yu, Weiwei
name: Jin, Haiqiang
name: Sun, Wei
name: Nan, Ding
name: Deng, Jianwen
name: Jia, Jingjing
name: Yu, Zemou
name: Huang, Yining
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: Emergency Medicine
subject: Endocrinology
subject: Medicine
subject: Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: Radiology and Organ Imaging
subject: Cell Biology
subject: Biochemistry
subject: Biological Sciences not elsewhere classified
subject: Neuroscience

description: Supplemental material, sj-pdf-1-jcb-10.1177_0271678X211010354 for Connexin43 promotes angiogenesis through activating the HIF-1α/VEGF signaling pathway under chronic cerebral hypoperfusion by Weiwei Yu, Haiqiang Jin, Wei Sun, Ding Nan, Jianwen Deng, Jingjing Jia, Zemou Yu and Yining Huang in Journal of Cerebral Blood Flow & Metabolism
"Preaching A Black Christ: Doing Black Theology with Ellen White." Pages 95-108 in A House on Fire: How Adventist Faith Responds to Race and Racism. Edited by Nathan Brown and Maury Jackson. Signs Publishing, 2022.
Creators: name: Korpman, Matthew
Publisher: name: Signs Publishing
Year: 2022

description: This chapter explores the contribution of the Seventh-day Adventist theologian/preacher Ellen White to Black Theology by comparing her early 19th century work to the later writings of James Cone. An argument is put forward that White intuited many of the insights that Cone would later formulate, demonstrating both that White can be a valuable conversation partner for theologians engaging with Cone and others, but also that Black Theology has deep roots in Seventh-day Adventist thinking and should be welcomed by the church not as outside phenomenon, but one which is closely related to its own self-identity.
sj-pdf-2-jcb-10.1177_0271678X211010354 - Supplemental material for Connexin43 promotes angiogenesis through activating the HIF-1α/VEGF signaling pathway under chronic cerebral hypoperfusion
Creators: name: Yu, Weiwei
name: Jin, Haiqiang
name: Sun, Wei
name: Nan, Ding
name: Deng, Jianwen
name: Jia, Jingjing
name: Yu, Zemou
name: Huang, Yining
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: Emergency Medicine
subject: Endocrinology
subject: Medicine
subject: Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: Radiology and Organ Imaging
subject: Cell Biology
subject: Biochemistry
subject: Biological Sciences not elsewhere classified
subject: Neuroscience

description: Supplemental material, sj-pdf-2-jcb-10.1177_0271678X211010354 for Connexin43 promotes angiogenesis through activating the HIF-1α/VEGF signaling pathway under chronic cerebral hypoperfusion by Weiwei Yu, Haiqiang Jin, Wei Sun, Ding Nan, Jianwen Deng, Jingjing Jia, Zemou Yu and Yining Huang in Journal of Cerebral Blood Flow & Metabolism