cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
title: Addressing Diabetes Mellitus in Thailand through Improved Surveillance and Diagnosis
Creators: name: May, Hayleigh
Publisher: name: University of Strathclyde
Year: 2017
Subjects: SERS
biosensor
diabetes detection
GHSA

description: The standard protocol for diabetes diagnostics in Thailand is based on measuring a combination of blood sugar and glycated haemoglobin levels (HbA1c). However, 40% of the Thai population are thalassemia carriers, this means that they have abnormally low haemoglobin levels and as such the HbA1c test is not reliable. Human serum albumin (HSA) is the most abundant protein in human blood plasma and in the presence of excess circulating sugar is non-enzymatically glycated to form glycated human serum albumin (GHSA) which adversely affects the normal HSA function. It has been reported that GHSA levels in diabetic patients is typically 2-5 times greater than normal levels and as such can be used as a marker for diabetes mellitus and is the target for this research. Our research goal was to develop an immunoassay for the rapid and sensitive detection of diabetes mellitus from saliva. Specifically, the research involved designing an assay for the detection of GHSA. A SERS biosensor capable of detecting GHSA at a level of 0.5 mg/mL has been demonstrated.

The research data has been split into two folders:

i)	Characterisation of Nanoparticle Conjugates
This folder contains all the data associated with the synthesis, functionalisation and characterisation of gold nanoparticles (AuNP) conjugated with glycated human serum albumin antibodies (GHSA Ab). The detection techniques used where extinction spectroscopy, size, zeta and SERS analysis. The SERS analysis was conducted using a Snowy Range instrument with a 638 nm laser excitation and acquisition times between 0.5 – 1s.

ii)	GHSA Antibody Conjugates Specificity Testing
This folder contains all the data associated with the spot testing and SERS analysis, used to determine if the GHSA Ab conjugates were specific for GHSA protein or whether they bound to other serum albumin proteins resulting in non-specific binding. Initial testing was conducted using nitrocellulose strips and specifically for this work a Renishaw instrument with a 633 nm laser excitation, x5 objective and laser power operating at 100% was employed. It should be noted that for the static scans, centred at 1300 cm-1, an acquisition time of 1s was employed whereas for the extended scans over the wavelength range 200–2000 cm-1 an acquisition time of 10s was employed. Further testing was conducted using a paper device and again spot tests and SERS analysis was carried out. A different Renishaw instrument was employed but again a 633 nm laser excitation, x5 objective, 1s static scan (centred at 1300 cm-1) and laser power operating at 100% was employed. Note, various concentrations of protein were used in these studies from 2 mg/mL -0.5 mg/mL but see file names for specific information.

The dataset is embargoed for 2 years. See ‘readme file’ for details on file content.
Entropic Compressibility of Lévy Processes
Creators: name: Fageot, Julien
name: Fallah, Alireza
name: Horel, Thibaut
Publisher: name: arXiv
Year: 2020
Subjects: subject: Probability (math.PR)
subject: Information Theory (cs.IT)
subject: FOS: Mathematics
subject: FOS: Computer and information sciences
subject: 60E07, 94A17, 60G18

description: In contrast to their seemingly simple and shared structure of independence and stationarity, Lévy processes exhibit a wide variety of behaviors, from the self-similar Wiener process to piecewise-constant compound Poisson processes. Inspired by the recent paper of Ghourchian, Amini, and Gohari (2018), we characterize their compressibility by studying the entropy of their double discretization (both in time and amplitude) in the regime of vanishing discretization steps. For a Lévy process with absolutely continuous marginals, this reduces to understanding the asymptotics of the differential entropy of its marginals at small times, for which we obtain a new local central limit theorem. We generalize known results for stable processes to the non-stable case, with a special focus on Lévy processes that are locally self-similar, and conceptualize a new compressibility hierarchy of Lévy processes, captured by their Blumenthal-Getoor index.
description: 34 pages, 1 figure
Non-Archimedean volumes of metrized nef line bundles
Creators: name: Boucksom, Sébastien
name: Gubler, Walter
name: Martin, Florent
Publisher: name: arXiv
Year: 2020
Subjects: subject: Algebraic Geometry (math.AG)
subject: Number Theory (math.NT)
subject: FOS: Mathematics
subject: Primary 32P05, Secondary 14G22, 32U15, 32W20

description: Let $L$ be a line bundle on a proper, geometrically reduced scheme $X$ over a non-trivially valued non-Archimedean field $K$. Roughly speaking, the non-Archimedean volume of a continuous metric on the Berkovich analytification of $L$ measures the asymptotic growth of the space of small sections of tensor powers of $L$. For a continuous semipositive metric on $L$ in the sense of Zhang, we show first that the non-Archimedean volume agrees with the energy. The existence of such a semipositive metric yields that $L$ is nef. A second result is that the non-Archimedean volume is differentiable at any semipositive continuous metric. These results are known when $L$ is ample, and the purpose of this paper is to generalize them to the nef case. The method is based on a detailed study of the content and the volume of a finitely presented torsion module over the (possibly non-noetherian) valuation ring of $K$.
description: Published version, 34 pages
Additional file 1 of Experiences of participants of a volunteer-supported walking intervention to improve physical function of nursing home residents – a mixed methods sub-study of the POWER-project
Creators: name: Weissbach, Sabine
name: Rieckert, Anja
name: Kersting, Christine
name: Grede, Nina
name: Donner-Banzhoff, Norbert
name: Soennichsen, Andreas
name: Vollmar, Horst Christian
name: Otte, Ina
name: Weimer, Pia
name: Trampisch, Ulrike Sonja
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: Supplementary Material 1
Global types and event structure semantics for asynchronous multiparty sessions
Creators: name: Castellani, Ilaria
name: Dezani-Ciancaglini, Mariangiola
name: Giannini, Paola
Publisher: name: arXiv
Year: 2021
Subjects: subject: Logic in Computer Science (cs.LO)
subject: FOS: Computer and information sciences

description: We propose an interpretation of multiparty sessions with asynchronous communication as Flow Event Structures. We introduce a new notion of global type for asynchronous multiparty sessions, ensuring the expected properties for sessions, including progress. Our global types, which reflect asynchrony more directly than standard global types and are more permissive, are themselves interpreted as Prime Event Structures. The main result is that the Event Structure interpretation of a session is equivalent, when the session is typable, to the Event Structure interpretation of its global type.
Supplementary_Tables_and_Figures – Supplemental material for Using AB Designs With Nonoverlap Effect Size Measures to Support Clinical Decision-Making: A Monte Carlo Validation
Creators: name: Giannakakos, Antonia R.
name: Lanovaz, Marc J.
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental material, Supplementary_Tables_and_Figures for Using AB Designs With Nonoverlap Effect Size Measures to Support Clinical Decision-Making: A Monte Carlo Validation by Antonia R. Giannakakos and Marc J. Lanovaz in Behavior Modification
Stochastic Processes with Expected Stopping Time
Creators: name: Chatterjee, Krishnendu
name: Doyen, Laurent
Publisher: name: arXiv
Year: 2021
Subjects: subject: Logic in Computer Science (cs.LO)
subject: FOS: Computer and information sciences

description: Markov chains are the de facto finite-state model for stochastic dynamical systems, and Markov decision processes (MDPs) extend Markov chains by incorporating non-deterministic behaviors. Given an MDP and rewards on states, a classical optimization criterion is the maximal expected total reward where the MDP stops after T steps, which can be computed by a simple dynamic programming algorithm. We consider a natural generalization of the problem where the stopping times can be chosen according to a probability distribution, such that the expected stopping time is T, to optimize the expected total reward. Quite surprisingly we establish inter-reducibility of the expected stopping-time problem for Markov chains with the Positivity problem (which is related to the well-known Skolem problem), for which establishing either decidability or undecidability would be a major breakthrough. Given the hardness of the exact problem, we consider the approximate version of the problem: we show that it can be solved in exponential time for Markov chains and in exponential space for MDPs.
Additional file 1 of Quantification of host proteomic responses to genotype 4 hepatitis E virus replication facilitated by pregnancy serum
Creators: name: Qian, Zhongyao
name: Cong, Chao
name: Li, Yi
name: Bi, Yanhong
name: He, Qiuxia
name: Li, Tengyuan
name: Xia, Yueping
name: Xu, Liangheng
name: Mickael, Houfack K.
name: Yu, Wenhai
name: Liu, Jiankun
name: Wei, Daqiao
name: Huang, Fen
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Additional file 1. Supplementary Figure.
Additional file 5 of Experiences of participants of a volunteer-supported walking intervention to improve physical function of nursing home residents – a mixed methods sub-study of the POWER-project
Creators: name: Weissbach, Sabine
name: Rieckert, Anja
name: Kersting, Christine
name: Grede, Nina
name: Donner-Banzhoff, Norbert
name: Soennichsen, Andreas
name: Vollmar, Horst Christian
name: Otte, Ina
name: Weimer, Pia
name: Trampisch, Ulrike Sonja
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: Supplementary Material 5
Standard monomials and invariant theory for arc spaces III: special linear group
Creators: name: Linshaw, Andrew R.
name: Song, Bailin
Publisher: name: arXiv
Year: 2021
Subjects: subject: Algebraic Geometry (math.AG)
subject: FOS: Mathematics
subject: 13F50, 14L24

description: This is the third in a series of papers on standard monomial theory and invariant theory of arc spaces. For any algebraically closed field $K$, we prove the arc space analogue of the first and second fundamental theorems of invariant theory for the special linear group. This is more subtle than the results for the general linear and symplectic groups obtained in the first two papers because the arc space of the corresponding affine quotients can be nonreduced.
description: Some corrections and improvements to the presentation. arXiv admin note: text overlap with arXiv:2108.06864
Additional file 1 of Checklist to assess Trustworthiness in RAndomised Controlled Trials (TRACT checklist): concept proposal and pilot
Creators: name: Mol, Ben W.
name: Lai, Shimona
name: Rahim, Ayesha
name: Bordewijk, Esmée M.
name: Wang, Rui
name: van Eekelen, Rik
name: Gurrin, Lyle C.
name: Thornton, Jim G.
name: van Wely, Madelon
name: Li, Wentao
Publisher: name: figshare
Year: 2024
Subjects: subject: Science Policy
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Table S1. The TRACT Screening Checklist.
Causal Modelling of Heavy-Tailed Variables and Confounders with Application to River Flow
Creators: name: Pasche, Olivier C.
name: Chavez-Demoulin, Valérie
name: Davison, Anthony C.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Methodology (stat.ME)
subject: Applications (stat.AP)
subject: FOS: Computer and information sciences
subject: 62G32

description: Confounding variables are a recurrent challenge for causal discovery and inference. In many situations, complex causal mechanisms only manifest themselves in extreme events, or take simpler forms in the extremes. Stimulated by data on extreme river flows and precipitation, we introduce a new causal discovery methodology for heavy-tailed variables that allows the effect of a known potential confounder to be almost entirely removed when the variables have comparable tails, and also decreases it sufficiently to enable correct causal inference when the confounder has a heavier tail. We also introduce a new parametric estimator for the existing causal tail coefficient and a permutation test. Simulations show that the methods work well and the ideas are applied to the motivating dataset.
description: Extremes (2022)
Supplemental Material4 - Supplemental material for Test–Retest Reliability of Skill Tests in the F-MARC Battery for Youth Soccer Players
Creators: name: Padrón-Cabo, Alexis
name: Rey, Ezequiel
name: Pérez-Ferreirós, Alexandra
name: Kalén, Anton
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental material, Supplemental Material4 for Test–Retest Reliability of Skill Tests in the F-MARC Battery for Youth Soccer Players by Alexis Padrón-Cabo, Ezequiel Rey, Alexandra Pérez-Ferreirós and Anton Kalén in Perceptual and Motor Skills
Supplemental Material6 - Supplemental material for Test–Retest Reliability of Skill Tests in the F-MARC Battery for Youth Soccer Players
Creators: name: Padrón-Cabo, Alexis
name: Rey, Ezequiel
name: Pérez-Ferreirós, Alexandra
name: Kalén, Anton
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental material, Supplemental Material6 for Test–Retest Reliability of Skill Tests in the F-MARC Battery for Youth Soccer Players by Alexis Padrón-Cabo, Ezequiel Rey, Alexandra Pérez-Ferreirós and Anton Kalén in Perceptual and Motor Skills
Supplemental Material, 860137_Web_Appendices - Geosurveillance, Location Privacy, and Personalization
Creators: name: Syagnik Banerjee
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 150402 Hospitality Management
subject: FOS: Economics and business

description: Supplemental Material, 860137_Web_Appendices for Geosurveillance, Location Privacy, and Personalization by Syagnik Banerjee in Journal of Public Policy & Marketing
Monoidal weak omega-categories as models of a type theory
Creators: name: Benjamin, Thibaut
Publisher: name: arXiv
Year: 2021
Subjects: subject: Logic in Computer Science (cs.LO)
subject: Category Theory (math.CT)
subject: FOS: Computer and information sciences
subject: FOS: Mathematics

description: Weak $ω$-categories are notoriously difficult to define because of the very intricate nature of their axioms. Various approaches have been explored, based on different shapes given to the cells. Interestingly, homotopy type theory encompasses a definition of weak $ω$-groupoid in a globular setting, since every type carries such a structure. Starting from this remark, Brunerie could extract this definition of globular weak $ω$\nobreakdash-groupoids, formulated as a type theory. By refining its rules, Finster and Mimram have then defined a type theory called CaTT, whose models are weak $ω$-categories. Here, we generalize this approach to monoidal weak $ω$-categories. Based on the principle that they should be equivalent to weak $ω$-categories with only one $0$-cell, we are able to derive a type theory MCaTT whose models are monoidal categories. This requires changing the rules of the theory in order to encode the information carried by the unique $0$-cell. The correctness of the resulting type theory is shown by defining a pair of translations between our type theory MCaTT and the type theory CaTT. Our main contribution is to show that these translations relate the models of our type theory to the models of the type theory CaTT consisting of $ω$-categories with only one $0$-cell, by analyzing in details how the notion of models interact with the structural rules of both type theories.
Additional file 1 of Expanding potential targets of herbal chemicals by node2vec based on herb–drug interactions
Creators: name: Zhang, Dai-yan
name: Cui, Wen-qing
name: Hou, Ling
name: Yang, Jing
name: Lyu, Li-yang
name: Wang, Ze-yu
name: Linghu, Ke-Gang
name: He, Wen-bin
name: Yu, Hua
name: Hu, Yuan-jia
Publisher: name: figshare
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Molecular Biology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified

description: Additional file1: Table S1. AUROC value of 5 algorithms applied on 9 datasets. Table S2. AP value of 5 algorithms applied on 9 datasets. Table S3. Predicted edges of herbal chemical-drug target. Table S4. Docking results.
The Relationship between Omani High School Peer-reviewed | Open Access Students' Home Environment and their English Academic Achievement
Creators: name: Al-Rashid, Ayoob
Publisher: name: Zenodo
Year: 2023
Subjects: Education, academic achievement, social background, home environment

description: English language academic achievement (ELAA) is an important aspectof education, and understanding the factors that influence it can havesignificant implications for both students and educators. In this study, theauthors investigated the relationship between the home environment ofOmani Grade 12 students and their English proficiency. Three dimensionsof the home environment backgrounds are considered: educational,socio-economic, and technological. The research is based on a pilot studyto develop a quantitative data collection tool. Four key findings on theimpact on English academic achievement emerged from the research.First, the educational status of the family has a significant impact. Second,family’s social status has no effect. Third, the financial and technologicalstatus of the family does not have an impact. Four, the home environmenthas less of an impact on the English language achievement of femalesthan males. Based on these, it is recommended that the Omani Ministryof Education establish a system for ongoing communication betweenschools and parents. Teachers should take students’ backgrounds intoaccount to identify challenging home environments.
Supplementary_Table_1__2 – Supplemental material for A 3-Dimensional In Vitro Model of Zonally Organized Extracellular Matrix
Creators: name: Walzer, Sonja M.
name: Toegel, Stefan
name: Chiari, Catharina
name: Farr, Sebastian
name: Rinner, Beate
name: Annelie-Martina Weinberg
name: Weinmann, Daniela
name: Fischer, Michael B.
name: Windhager, Reinhard
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 110314 Orthopaedics
subject: FOS: Clinical medicine
subject: 110604 Sports Medicine
subject: FOS: Health sciences
subject: 110323 Surgery
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Supplemental material, Supplementary_Table_1__2 for A 3-Dimensional In Vitro Model of Zonally Organized Extracellular Matrix by Sonja M. Walzer, Stefan Toegel, Catharina Chiari, Sebastian Farr, Beate Rinner, Annelie-Martina Weinberg, Daniela Weinmann, Michael B. Fischer and Reinhard Windhager in CARTILAGE
Formalization of dependent type theory: The example of CaTT
Creators: name: Benjamin, Thibaut
Publisher: name: arXiv
Year: 2021
Subjects: subject: Logic in Computer Science (cs.LO)
subject: Category Theory (math.CT)
subject: FOS: Computer and information sciences
subject: FOS: Mathematics

description: We present the type theory CaTT, originally introduced by Finster and Mimram to describe globular weak $ω$-categories, and we formalise this theory in the language of homotopy type theory. Most of the studies about this type theory assume that it is well-formed and satisfy the usual syntactic properties that dependent type theories enjoy, without being completely clear and thorough about what these properties are exactly. We use the formalisation that we provide to list and formally prove all of these meta-properties, thus filling a gap in the foundational aspect. We discuss the key aspects of the formalisation inherent to the theory CaTT, in particular that the absence of definitional equality greatly simplify the study, but also that specific side conditions are challenging to properly model. We present the formalisation in a way that not only handles the type theory CaTT but also all the related type theories that share the same structure, and in particular we show that this formalisation provides a proper ground to the study of the theory MCaTT which describes the globular, monoidal weak $ω$-categories. The article is accompanied by a development in the proof assistant Agda to actually check the formalisation that we present.
Subordinate uncertainty and manager fairness enactment: An experimental study
Creators: name: Bobocel, D. Ramona
name: Nishioka, Midori
name: Beck, James W.
Publisher: name: OSF Registries
Year: 2024
Subjects: subject: Industrial and Organizational Psychology
subject: Social and Behavioral Sciences
subject: Psychology
subject: FOS: Psychology

description: This experimental study will involve manipulating uncertainty and job performance through vignettes that describe hypothetical employees. At the time of this registration, the data for this study have not been collected.
Additional file 1 of Effectiveness and safety of anti-CGRP monoclonal antibodies in patients over 65 years: a real-life multicentre analysis of 162 patients
Creators: name: Muñoz-Vendrell, Albert
name: Campoy, Sergio
name: Caronna, Edoardo
name: Alpuente, Alicia
name: Torres-Ferrus, Marta
name: Nieves Castellanos, Candela
name: Olivier, Marina
name: Campdelacreu, Jaume
name: Prat, Joan
name: Camiña Muñiz, Javier
name: Molina Martínez, Francisco José
name: Mínguez-Olaondo, Ane
name: Ruibal Salgado, Marta
name: Santos Lasaosa, Sonia
name: Navarro Pérez, María Pilar
name: Morollón, Noemí
name: López Bravo, Alba
name: Cano Sánchez, Luis Miguel
name: García-Sánchez, Sonia María
name: García-Ull, Jésica
name: Rubio-Flores, Laura
name: Gonzalez-Martinez, Alicia
name: Quintas, Sonia
name: Echavarría Íñiguez, Ana
name: Gil Luque, Sendoa
name: Castro-Sánchez, María Victoria
name: Adell Ortega, Vanesa
name: García Alhama, Jessica
name: Berrocal-Izquierdo, Nuria
name: Belvís, Robert
name: Díaz-Insa, Samuel
name: Pozo-Rosich, Patricia
name: Huerta-Villanueva, Mariano
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Science Policy
subject: Mental Health
subject: Virology

description: Additional file 1: Appendix 1. Sensitivity analysis of quantitative endpoints at month 6.
Additional file 6 of Experiences of participants of a volunteer-supported walking intervention to improve physical function of nursing home residents – a mixed methods sub-study of the POWER-project
Creators: name: Weissbach, Sabine
name: Rieckert, Anja
name: Kersting, Christine
name: Grede, Nina
name: Donner-Banzhoff, Norbert
name: Soennichsen, Andreas
name: Vollmar, Horst Christian
name: Otte, Ina
name: Weimer, Pia
name: Trampisch, Ulrike Sonja
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: Supplementary Material 6
ADI: Adversarial Dominating Inputs in Vertical Federated Learning Systems
Creators: name: Pang, Qi
name: Yuan, Yuanyuan
name: Wang, Shuai
name: Zheng, Wenting
Publisher: name: arXiv
Year: 2022
Subjects: subject: Cryptography and Security (cs.CR)
subject: Distributed, Parallel, and Cluster Computing (cs.DC)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: Vertical federated learning (VFL) system has recently become prominent as a concept to process data distributed across many individual sources without the need to centralize it. Multiple participants collaboratively train models based on their local data in a privacy-aware manner. To date, VFL has become a de facto solution to securely learn a model among organizations, allowing knowledge to be shared without compromising privacy of any individuals. Despite the prosperous development of VFL systems, we find that certain inputs of a participant, named adversarial dominating inputs (ADIs), can dominate the joint inference towards the direction of the adversary's will and force other (victim) participants to make negligible contributions, losing rewards that are usually offered regarding the importance of their contributions in federated learning scenarios. We conduct a systematic study on ADIs by first proving their existence in typical VFL systems. We then propose gradient-based methods to synthesize ADIs of various formats and exploit common VFL systems. We further launch greybox fuzz testing, guided by the saliency score of ``victim'' participants, to perturb adversary-controlled inputs and systematically explore the VFL attack surface in a privacy-preserving manner. We conduct an in-depth study on the influence of critical parameters and settings in synthesizing ADIs. Our study reveals new VFL attack opportunities, promoting the identification of unknown threats before breaches and building more secure VFL systems.
Assemblages and steering in general probabilistic theories
Creators: name: Jenčová, Anna
Publisher: name: arXiv
Year: 2022
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We study steering in the framework of general probabilistic theories. We show that for dichotomic assemblages, steering can be characterized in terms of a certain tensor cross norm, which is also related to a steering degree given by steering robustness. Another contribution is the observation that steering in GPTs can be conveniently treated using Choquet theory for probability measures on the state space. In particular, we find a variational expression for universal steering degree for dichotomic assemblages and obtain conditions characterizing unsteerable states analogous to some conditions recently found for the quantum case. The setting also enables us to rather easily extend the results to infinite dimensions and arbitrary numbers of measurements with arbitrary outcomes.
description: 19 pages, comments welcome
Additional file 1 of 2-Deoxy-D-glucose inhibits lymphocytic choriomeningitis virus propagation by targeting glycoprotein N-glycosylation
Creators: name: Baďurová, Lucia
name: Polčicová, Katarína
name: Omasta, Božena
name: Ovečková, Ingrid
name: Kocianová, Eva
name: Tomášková, Jana
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Additional file 1: Table S1. List of used primers
Core Ontology of Phenotypes (COP)
Creators: name: Uciteli, Alexandr
name: Beger, Christoph
name: Kirsten, Toralf
name: Meineke, Frank
name: Herre, Heinrich
Publisher: name: Zenodo
Year: 2021
Subjects: ontology
phenotype
inference-engine
phenotype-exchange-format

description: The Core Ontology of Phenotypes is a core ontology, which can be used to specify phenotype algorithms as ontologies (Phenotype Algorithm Specification Ontology).
description: If you use the content of this repository, please cite it using these metadata.
Variance estimation for Sequential Monte Carlo Algorithms: a backward sampling approach
Creators: name: idrissi, Yazid Janati El
name: Corff, Sylvain Le
name: Petetin, Yohan
Publisher: name: arXiv
Year: 2022
Subjects: subject: Methodology (stat.ME)
subject: FOS: Computer and information sciences

description: In this paper, we consider the problem of online asymptotic variance estimation for particle filtering and smoothing. Current solutions for the particle filter rely on the particle genealogy and are either unstable or hard to tune in practice. We propose to mitigate these limitations by introducing a new estimator of the asymptotic variance based on the so called backward weights. The resulting estimator is weakly consistent and trades computational cost for more stability and reduced variance. We also propose a more computationally efficient estimator inspired by the PaRIS algorithm of Olsson & Westerborn. As an application, particle smoothing is considered and an estimator of the asymptotic variance of the Forward Filtering Backward Smoothing estimator applied to additive functionals is provided.
description: preprint
Single-grasp deformable object discrimination: the effect of gripper morphology, sensing modalities, and action parameters
Creators: name: Pliska, Michal
name: Patni, Shubhan
name: Mares, Michal
name: Stoudek, Pavel
name: Straka, Zdenek
name: Stepanova, Karla
name: Hoffmann, Matej
Publisher: name: arXiv
Year: 2022
Subjects: subject: Robotics (cs.RO)
subject: FOS: Computer and information sciences
subject: I.2.9
subject: 68T40

description: In haptic object discrimination, the effect of gripper embodiment, action parameters, and sensory channels has not been systematically studied. We used two anthropomorphic hands and two 2-finger grippers to grasp two sets of deformable objects. On the object classification task, we found: (i) among classifiers, SVM on sensory features and LSTM on raw time series performed best across all grippers; (ii) faster compression speeds degraded performance; (iii) generalization to different grasping configurations was limited; transfer to different compression speeds worked well for the Barrett Hand only. Visualization of the feature spaces using PCA showed that gripper morphology and action parameters were the main source of variance, making generalization across embodiment or grip configurations very difficult. On the highly challenging dataset consisting of polyurethane foams alone, only the Barrett Hand achieved excellent performance. Tactile sensors can thus provide a key advantage even if recognition is based on stiffness rather than shape. The data set with 24,000 measurements is publicly available.
description: 13 pages, 8 figures
$T_{cc}^+$ and $X(3872)$ with the complex scaling method and $DD(\bar{D})π$ three-body effect
Creators: name: Lin, Zi-Yang
name: Cheng, Jian-Bo
name: Zhu, Shi-Lin
Publisher: name: arXiv
Year: 2022
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We use the leading order (LO) contact interactions and OPE potentials to investigate the newly observed double-charm state $T_{cc}^+$. The $DDπ$ three-body effect is important in this system since the intermediate states can go on shell. We keep the dependence of the pion propagators on the center-of-mass energy, which results in a unitary cut of the OPE potential at the $DDπ$ three-body threshold. By solving the complex scaled Schrödinger equation, we find a pole corresponding to the $T_{cc}^+$ on the physical Riemann sheet. Its width is around 80 keV and nearly independent of the choice of the cutoff. Assuming the $D\bar{D}π$ and $D\bar{D}^*$ channels as the main decay channels, we apply the similar calculations to the $X(3872)$, and find its width is even smaller. Besides, the isospin breaking effect is significant for the $X(3872)$ while its impact on the $T_{cc}^+$ is relatively small.
description: 25 pages, 10 figures, 6 tables
861927_Supplemental_information_rev – Supplemental material for Validation of a palliative care outcome measurement tool supplemented by neurological symptoms (HOPE+): Identification of palliative concerns of neurological patients
Creators: name: Dillen, Kim
name: Ebke, Markus
name: Koch, Andreas
name: Becker, Ingrid
name: Ostgathe, Christoph
name: Voltz, Raymond
name: Golla, Heidrun
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 110308 Geriatrics and Gerontology
subject: FOS: Clinical medicine
subject: 111702 Aged Health Care
subject: FOS: Health sciences

description: Supplemental material, 861927_Supplemental_information_rev for Validation of a palliative care outcome measurement tool supplemented by neurological symptoms (HOPE+): Identification of palliative concerns of neurological patients by Kim Dillen, Markus Ebke, Andreas Koch, Ingrid Becker, Christoph Ostgathe, Raymond Voltz and Heidrun Golla in Palliative Medicine
Additional file 2 of 2-Deoxy-D-glucose inhibits lymphocytic choriomeningitis virus propagation by targeting glycoprotein N-glycosylation
Creators: name: Baďurová, Lucia
name: Polčicová, Katarína
name: Omasta, Božena
name: Ovečková, Ingrid
name: Kocianová, Eva
name: Tomášková, Jana
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Additional file 2: Figure S1. Viability of the LCMV-infected MRC-5 cells cultivated in the presence of 2-DG for 48-hours.
RSOS-S2-RNR-Read-etal-1999-RRR-supplementary.docx from Choice Bracketing revisited: Replication and extensions Registered Report of seven experiments reviewed in Read et al. (1999)
Creators: name: Wong, Chun Lam
name: Feldman, Gilad
Publisher: name: The Royal Society
Year: 2025
Subjects: classificationCode: 529999
subject: Other psychology not elsewhere classified

description: Supplementary materials
Additional file 1 of Vaginal microbial profile of cervical cancer patients receiving chemoradiotherapy: the potential involvement of Lactobacillus iners in recurrence
Creators: name: Wang, Yichen
name: Wang, Tingzhang
name: Yan, Dingding
name: Zhao, Hongxia
name: Wang, Meixia
name: Liu, Tingting
name: Fan, Xiaoji
name: Xu, Xiaoxian
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Biotechnology
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Supplementary Material 1
Appendix_A._MALED_Investigators_JPA – Supplemental material for Assessing Early Childhood Fluid Reasoning in Low- and Middle-Income Nations: Validity of the Wechsler Preschool and Primary Scale of Intelligence Across Seven MAL-ED Sites
Creators: name: Ruan-Iu, Linda
name: Pendergast, Laura L.
name: Rasheed, Muneera
name: Fahmida Tofail
name: Svensen, Erling
name: Maphula, Angelina
name: Reeba Roshan
name: Baitun Nahar
name: Shrestha, Rita
name: Williams, Brittney
name: Schaefer, Barbara A.
name: Scharf, Rebecca
name: Caulfield, Laura E.
name: Seidman, Jessica
name: Murray-Kolb, Laura E.
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: Education
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental material, Appendix_A._MALED_Investigators_JPA for Assessing Early Childhood Fluid Reasoning in Low- and Middle-Income Nations: Validity of the Wechsler Preschool and Primary Scale of Intelligence Across Seven MAL-ED Sites by Linda Ruan-Iu, Laura L. Pendergast, Muneera Rasheed, Fahmida Tofail, Erling Svensen, Angelina Maphula, Reeba Roshan, Baitun Nahar, Rita Shrestha, Brittney Williams, Barbara A. Schaefer, Rebecca Scharf, Laura E. Caulfield, Jessica Seidman and Laura E. Murray-Kolb in Journal of Psychoeducational Assessment
Neural Networks for Extreme Quantile Regression with an Application to Forecasting of Flood Risk
Creators: name: Pasche, Olivier C.
name: Engelke, Sebastian
Publisher: name: arXiv
Year: 2022
Subjects: subject: Methodology (stat.ME)
subject: Applications (stat.AP)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: Risk assessment for extreme events requires accurate estimation of high quantiles that go beyond the range of historical observations. When the risk depends on the values of observed predictors, regression techniques are used to interpolate in the predictor space. We propose the EQRN model that combines tools from neural networks and extreme value theory into a method capable of extrapolation in the presence of complex predictor dependence. Neural networks can naturally incorporate additional structure in the data. We develop a recurrent version of EQRN that is able to capture complex sequential dependence in time series. We apply this method to forecast flood risk in the Swiss Aare catchment. It exploits information from multiple covariates in space and time to provide one-day-ahead predictions of return levels and exceedance probabilities. This output complements the static return level from a traditional extreme value analysis, and the predictions are able to adapt to distributional shifts as experienced in a changing climate. Our model can help authorities to manage flooding more effectively and to minimize their disastrous impacts through early warning systems.
Additional file 1 of The average gonadotrophin dosage per follicle is predictive of ovarian response and cumulative live birth chances after in vitro fertilization: a retrospective cohort study
Creators: name: Liu, Shan
name: Ma, Shuai
name: Li, Yuan
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: Additional file1. Sensitivity analyses between patients who got cumulative live birth (CLB) and did not get CLB.
Efficiency of estimators for locally asymptotically normal quantum statistical models
Creators: name: Fujiwara, Akio
name: Yamagata, Koichi
Publisher: name: arXiv
Year: 2022
Subjects: subject: Quantum Physics (quant-ph)
subject: Statistics Theory (math.ST)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: We herein establish an asymptotic representation theorem for locally asymptotically normal quantum statistical models. This theorem enables us to study the asymptotic efficiency of quantum estimators such as quantum regular estimators and quantum minimax estimators, leading to a universal tight lower bound beyond the i.i.d. assumption. This formulation complements the theory of quantum contiguity developed in the previous paper [Fujiwara and Yamagata, Bernoulli 26 (2020) 2105-2141], providing a solid foundation of the theory of weak quantum local asymptotic normality.
Additional file 1 of The fecal bacterial microbiome of the Kuhl’s pipistrelle bat (Pipistrellus kuhlii) reflects landscape anthropogenic pressure
Creators: name: Lobato-Bailón, Lourdes
name: García-Ulloa, Manuel
name: Santos, Andrés
name: Guixé, David
name: Camprodon, Jordi
name: Florensa-Rius, Xavier
name: Molleda, Raúl
name: Manzano, Robert
name: P. Ribas, Maria
name: Espunyes, Johan
name: Dias-Alves, Andrea
name: Marco, Ignasi
name: Migura-Garcia, Lourdes
name: Martínez-Urtaza, Jaime
name: Cabezón, Oscar
Publisher: name: figshare
Year: 2024
Subjects: subject: Microbiology
subject: FOS: Biological sciences

description: Additional file 1. Figure S1. Map of sampling locations. Localities and their associated scenarios are depicted in the map with colored dots covering the foraging range of Pipistrellus kuhlii (4.5km): D0 (mature and old-growth forest), D1 (extensive farming and agriculture), D2 (immature and secondary forest), and D3 (urban and intensive agriculture landscape). Figure S2. Rarefaction curves of each sample, separated by scenario. Sequence sample size (number of reads generated) and genus richness are depicted on the X and Y-axis, respectively. Figure S3. Comparison of diversity between males and lactating females from scenario D0. No significant differentiation in alpha diversity given by Shannon’s Index (Panel A; Kruskal-Wallis statistic: 7; p = 1) and beta diversity given by Bray-Curtis distance (Panel B; ANOSIM’s R: -0.16923; p = 0.783) were found. Table S1. Environmental information of the scenarios selected. Table S2. Biological data of sampled bats, time and location of sampling. Table S3. Pair-wise comparison of alpha and beta diversities between scenarios. Significant results are signaled with *. Table S4. Biosample accession numbers for datasets obtained in this study.
Observables on multisymplectic manifolds and higher Courant algebroids
Creators: name: Miti, Antonio Michele
name: Zambon, Marco
Publisher: name: arXiv
Year: 2022
Subjects: subject: Symplectic Geometry (math.SG)
subject: Mathematical Physics (math-ph)
subject: Quantum Algebra (math.QA)
subject: FOS: Mathematics
subject: FOS: Physical sciences
subject: 53D05 (Primary), 17B70, 53D17, 53D50 (Secondary)

description: Let $ω$ be a closed, non-degenerate differential form of arbitrary degree. Associated to it there are an $L_{\infty}$-algebra of observables, and an $L_{\infty}$-algebra of sections of the higher Courant algebroid twisted by $ω$. Our main result is the existence of an $L_{\infty}$-embedding of the former into the latter. We display explicit formulae for the embedding, involving the Bernoulli numbers. When $ω$ is an integral symplectic form, the embedding can be realized geometrically via the prequantization construction, and when $ω$ is a 3-form the embedding was found by Rogers in 2010. Further, in the presence of homotopy moment maps, we show that the embedding is compatible with gauge transformations.
description: 48 pages
Additional file 1 of Predicting high health-cost users among people with cardiovascular disease using machine learning and nationwide linked social administrative datasets
Creators: name: Nghiem, Nhung
name: Atkinson, June
name: Nguyen, Binh P.
name: Tran-Duy, An
name: Wilson, Nick
Publisher: name: figshare
Year: 2024
Subjects: subject: Statistics
subject: FOS: Mathematics
subject: Artificial Intelligence and Image Processing
subject: FOS: Computer and information sciences

description: Additional file 1: Appendix.
Strong phase coherence and vortex matter in a fractal system with proximity-induced superconductivity
Creators: name: Teramachi, Nanami
name: Hashimoto, Aoi
name: Nakaaki, Iku
name: Ooi, Shuuichi
name: Tachiki, Minoru
name: Arisawa, Shunichi
name: Seto, Yusuke
name: Sakurai, Takahiro
name: Ohta, Hitoshi
name: Valenta, Jaroslav
name: Tsujii, Naohito
name: Mori, Takao
name: Uchino, Takashi
Publisher: name: arXiv
Year: 2022
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: The proximity effect in normal/superconductor heterostructures is an intriguing phenomenon in that the normal side takes on the properties of a superconductor with an induced gap. However, the structural and pinning properties of vortices inside the normal regions remain poorly understood. Here, we report structure and superconducting properties of a proximity-coupled Mg/MgO/MgB2 system with ~30 vol. % of superconducting MgB2, in which MgB2 nanograins are distributed in a fractal manner to form a proximity network with clean interfaces. Conductivity and magnetic measurements demonstrate that this proximity-coupled system acts as a fully phase coherent superconductor with isotropic pinning. Magneto-optical imaging also reveals a rather homogeneous flux density distribution with no apparent granularity. Furthermore, we observe quantized proximity vortices and their clustering behavior by scanning superconducting quantum interface device microscopy. These results show that in contrast to the case of conventional granular superconductors, the grain boundaries in the present sample carry high critical currents and have high vortex pinning efficiency, resulting in a robust phase coherent state irrespective of the low volume fraction of the MgB2 nanograins. This finding not only reveals the features of proximity-induced vortices, but also demonstrates an excellent phase-locked capability of the proximity-coupled fractal system.
description: 26 pages, 5 figures and 4 Supplemental figures
Constructing Concise Characteristic Samples for Acceptors of Omega Regular Languages
Creators: name: Angluin, Dana
name: Fisman, Dana
Publisher: name: arXiv
Year: 2022
Subjects: subject: Formal Languages and Automata Theory (cs.FL)
subject: FOS: Computer and information sciences

description: A characteristic sample for a language $L$ and a learning algorithm $\textbf{L}$ is a finite sample of words $T_L$ labeled by their membership in $L$ such that for any sample $T \supseteq T_L$ consistent with $L$, on input $T$ the learning algorithm $\textbf{L}$ returns a hypothesis equivalent to $L$. Which omega automata have characteristic sets of polynomial size, and can these sets be constructed in polynomial time? We address these questions here. In brief, non-deterministic omega automata of any of the common types, in particular Büchi, do not have characteristic samples of polynomial size. For deterministic omega automata that are isomorphic to their right congruence automata, the fully informative languages, polynomial time algorithms for constructing characteristic samples and learning from them are given. The algorithms for constructing characteristic sets in polynomial time for the different omega automata (of types Büchi, coBüchi, parity, Rabin, Street, or Muller), require deterministic polynomial time algorithms for (1) equivalence of the respective omega automata, and (2) testing membership of the language of the automaton in the informative classes, which we provide.
Additional file 1 of Early miR-320b and miR-25-3p miRNA levels correlate with multiple sclerosis severity at 10 years: a cohort study
Creators: name: Gonzalez-Martinez, Alicia
name: Bose, Gauruv
name: Lokhande, Hrishikesh
name: Saxena, Shrishti
name: Healy, Brian C.
name: Polgar-Turcsanyi, Mariann
name: Weiner, Howard L.
name: Chitnis, Tanuja
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer

description: Additional file 1. Table S1. Treatment breakdown regarding disease outcome. Table S2. Quality control criteria for exclusion of miRNA during analysis. Table S3. Kits and primer sources/sequences used to detect specific miRNAs. Table S4. Correlation between cytokines, sNFL, GFAP and chi3l1 and MS-associated miRNA. Table S5. Correlation between cytokines, sNFL, GFAP and chi3l1 and MS-outcome. Table S6. Correlation between BPF and MS-outcome. Table S7. Genes targeted by miR-320b and mIR-25-3p in the adherens junction pathway and hippo signaling pathway.