Survey data and code to estimate abundance of Brachyramphus murrelets, Icy Bay, Alaska, USA
Creators: name: Kissling, Michelle
name: Lukacs, Paul
name: Nesvacil, Kelly
name: Gende, Scott
name: Pendleton, Grey
Publisher: name: Zenodo
Year: 2024
Subjects: Brachyramphus murrelets
temporary emigration
biological population
statistical population
detection probability
seabird
superpopulation
abundance model

description: A fundamental aspect of ecology is identifying and characterizing population processes. In population studies, we almost always use sampling to make inference about the biological population, which is the population of interest, and the part of the population at risk of sampling is referred to as the statistical population. Ideally, the statistical population is the same as, or accurately represents its corresponding biological population. However, in practice, they rarely align in space and time, which can lead to biased inference. We often view a population misalignment as a temporary emigration process and resolve it with replicate and/or repeat sampling, though this approach is not feasible for all species and habitats. We developed a hierarchical framework to estimate abundance of a biological population of the Kittlitz's murrelet (Brachyramphus brevirostris), a highly mobile, non-territorial, ice-associated seabird of conservation concern in Alaska and eastern Russia. Our model combines datasets from boat and telemetry surveys to account for all components of detection probability, specifically using telemetry locations to estimate probability of presence (pp) and line transect distance sampling to estimate probability of detection (pd). By estimating pp directly, we were able to account for temporary emigration from the sampled area, which changed with shifting icefloes between sampling occasions. Between 2007 and 2012, annual pp was highly variable, ranging from 0.33 to 0.75 (median=0.50, standard deviation=0.02), but was not predictable using five environmental covariates. In years when two boat surveys were conducted, our model reduced the coefficient of variation (CV) of abundance estimates for the biological population compared to the statistical population by 13–35%, yet in the year with only one boat survey (2009), the CV skyrocketed about 10-fold, emphasizing the importance of a second survey if pp varies. Although we increased the precision of annual abundance estimates by accounting for pp, we did not see the same improvement in the temporal trend estimate. This result indicates that while we reduced within-year variance, we failed to account for a source(s) of variation across years, which we suspect is related to the propensity for murrelets to skip breeding in some years. Our model to account for a population misalignment is simple, flexible, and scalable for generating unbiased and precise abundance estimates of highly mobile species that occupy dynamic habitats where other open population models are not possible . Importantly, it improves inference of the biological population. We urge ecologists to think critically about the population in which they want to draw inference, especially as tracking technology improves and model complexity increases.
description: Funding provided by: Alaska Department of Fish and GameROR ID: https://ror.org/02rh7vj17Award Number: 
Funding provided by: United States Fish and Wildlife ServiceROR ID: https://ror.org/04k7dar27Award Number: 
Funding provided by: National Park ServiceROR ID: https://ror.org/044zqqy65Award Number:
description: These data used to estimate abundance and trend of Kittlitz's murrelets were collected in Icy Bay, Alaska, USA between 2005 and 2012. Boat survey data were gathered along line transects using distance sampling, and telemetry data were collected by flying aerial telemetry flights to locate radio-tagged murrelets during the breeding season. Methods are summarized in numerous publications, including the current manuscript in review at Peer Community In Ecology and several others described in the README file.