cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Spilogona obscuripennis
Creators: name: Sorokina, Vеra S.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Muscidae
Spilogona
Spilogona obscuripennis

description: Spilogona obscuripennis (Stein, 1916)
Material examined. Altai Republic: Shebalino district: 2 mаles, Seminskу Раss, Turаlа River, 50°59'N 85°41'Е, 1350 m, 8–12.vii.2016, leg. N. Vikhrev (ZMUM); Onguday district: 1 mаle, envirоns оf Ongudау, 840 m, 50°46'N 86°05'Е, 8–13.vii.2016, leg. N. Vikhrev (ZMUM).
Remarks. New reсоrd frоm the Altаi.
description: Published as part of Sorokina, Vеra S., 2018, Eleven new species of Spilogona Schnabl, 1911 (Diptera, Muscidae) from the Altai Mountains of Russia, with key to species, pp. 201-250 in Zootaxa 4410 (2) on page 242, DOI: 10.11646/zootaxa.4410.2.1, http://zenodo.org/record/1221458
Lecithocera quadratiella Park 2018
Creators: name: Yu, Shuai
name: Wang, Shuxia
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Lecithocera
Lecithocera quadratiella

description: Lecithocera quadratiella Park, 2018
Lecithocera quadratiella Park, 2018: 109. TL: China (Taiwan). TD: USNM.
Distribution
China (Taiwan).
description: Published as part of Yu, Shuai & Wang, Shuxia, 2024, The genus Lecithocera (Lepidoptera: Lecithoceridae) from China, with descriptions of twenty-one new species, pp. 1-74 in European Journal of Taxonomy 924 on page 67, DOI: 10.5852/ejt.2024.924.2447, http://zenodo.org/record/10803382
$S^5$: New insights from deep spectroscopic observations of the tidal tails of the globular clusters NGC 1261 and NGC 1904
Creators: name: Awad, Petra
name: Li, Ting S.
name: Erkal, Denis
name: Peletier, Reynier F.
name: Bunte, Kerstin
name: Koposov, Sergey E.
name: Li, Andrew
name: Balbinot, Eduardo
name: Smith, Rory
name: Canducci, Marco
name: Tino, Peter
name: Senkevich, Alexandra M.
name: Cullinane, Lara R.
name: Da Costa, Gary S.
name: Ji, Alexander P.
name: Kuehn, Kyler
name: Lewis, Geraint F.
name: Pace, Andrew B.
name: Zucker, Daniel B.
name: Bland-Hawthorn, Joss
name: Limberg, Guilherme
name: Martell, Sarah L.
name: McKenzie, Madeleine
name: Yang, Yong
name: Usman, Sam A.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: As globular clusters (GCs) orbit the Milky Way, their stars are tidally stripped forming tidal tails that follow the orbit of the clusters around the Galaxy. The morphology of these tails is complex and shows correlations with the phase of the orbit and the orbital angular velocity, especially for GCs on eccentric orbits. Here, we focus on two GCs, NGC 1261 and NGC 1904, that have potentially been accreted alongside Gaia-Enceladus and that have shown signatures of having, in addition of tidal tails, structures formed by distributions of extra-tidal stars that are misaligned with the general direction of the clusters' respective orbits. To provide an explanation for the formation of these structures, we make use of spectroscopic measurements from the Southern Stellar Stream Spectroscopic Survey ($S^5$) as well as proper motion measurements from Gaia's third data release (DR3), and apply a Bayesian mixture modeling approach to isolate high-probability member stars. We recover extra-tidal features similar to those found in Shipp et al. (2018) surrounding each cluster. We conduct N-body simulations and compare the expected distribution and variation in the dynamical parameters along the orbit with those of our potential member sample. Furthermore, we use Dark Energy Camera (DECam) photometry to inspect the distribution of the member stars in the color-magnitude diagram (CMD). We find that the potential members agree reasonably with the N-body simulations and that the majority of them follow a simple stellar population-like distribution in the CMD which is characteristic of GCs. In the case of NGC 1904, we clearly detect the tidal debris escaping the inner and outer Lagrange points which are expected to be prominent when at or close to the apocenter of its orbit. Our analysis allows for further exploration of other GCs in the Milky Way that exhibit similar extra-tidal features.
Additional file 2: of A study of human resource competencies required to implement community rehabilitation in less resourced settings
Creators: name: Brynne Gilmore
name: MacLachlan, Malcolm
name: McVeigh, Joanne
name: Chiedza McClean
name: Carr, Stuart
name: Duttine, Antony
name: Hasheem Mannan
name: McAuliffe, Eilish
name: Gubela Mji
name: Eide, Arne
name: Karl-Gerhard Hem
name: Gupta, Neeru
Publisher: name: Figshare
Year: 2017
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy

description: CBR Matrix and perceived training needs of CBR workers: a multi-country study. (DOCX 274Â kb)
Additional file 15: of Metagenomic characterization of ambulances across the USA
Creators: name: OâHara, Niamh
name: Reed, Harry
name: Afshinnekoo, Ebrahim
name: Harvin, Donell
name: Caplan, Nora
name: Rosen, Gail
name: Frye, Brook
name: Woloszynek, Stephen
name: Ounit, Rachid
name: Levy, Shawn
name: Butler, Erin
name: Mason, Christopher
Publisher: name: Figshare
Year: 2017
Subjects: subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer

description: Figure S21. Boxplots of classifier performance over model specific parameter sweeps during training (80/20 split) on MetaPhlan data for city class. Classes underwent up sampling and were optimized in terms of mean ROC score. Shown are kappa and balanced accuracy, averaged over classes. rf, random forest; gbm, stochastic gradient boosting; rrf, regularized random forest; c50, c5.0 decision tree, pls, partial least squares; en, elastic net; knn, k-nearest neighbors; svm linear, support vector machine with linear kernel; rbf svm, support vector machine with rbf kernel. (DOCX 134Â kb)
A study on late time UV-emission in core collapse supernovae and the implications for the peculiar transient AT2018cow
Creators: name: Inkenhaag, Anne
name: Jonker, Peter G.
name: Levan, Andrew J.
name: Fraser, Morgan
name: Lyman, Joseph D.
name: Galbany, Lluís
name: Kuncarayakti, Hanindyo
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Over time, core-collapse supernova (CCSN) spectra become redder due to dust formation and cooling of the SN ejecta. A UV detection of a CCSN at late times thus indicates an additional physical process such as interaction between the SN ejecta and the circumstellar material, or viewing down to the central engine of the explosion. Both these models have been proposed to explain the peculiar transient AT2018cow, a luminous fast blue optical transient that has been detected in the UV 2-4 years after the event with only marginal fading over this time period. To identify if the late-time UV detection of AT2018cow could indicate that it is a CCSN, we investigate if CCSNe are detected in the UV between 2-5 years after the explosion. We use a sample of 51 nearby (z<0.065) CCSNe observed with the Hubble Space Telescope within 2-5 years of discovery. We measure their brightness, or determine an upper limit on the emission through an artificial star experiment if there is no detection. For two CCSNe we detect a point source within the uncertainty region of the SN position. Both have a low chance alignment probability with bright objects within their host galaxies and are thus likely related to the SNe. Comparing the absolute UV magnitude of AT2018cow to the absolute UV magnitudes of the two potential SN detections, there is no evidence that a late-time UV detection of AT2018cow is atypical for interacting SNe. However, when limiting to CCSNe closer than AT2018cow, we see that it is brighter than the upper limits on most non-detections. Combined with a very small late time photospheric radius of AT2018cow, this leads us to conclude that AT2018cow's late-time UV detection was not driven by interaction. It suggests instead that we are possibly viewing the inner region of the explosion. Such properties are naturally expected in tidal disruption models and are less straightforward in supernova scenarios.
description: 15 pages, 6 figures, 2 tables, accepted for publication in A&A
Spilogona opaca
Creators: name: Sorokina, Vеra S.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Muscidae
Spilogona
Spilogona opaca

description: Spilogona opaca (Schnabl, 1915)
Material examined. Altai Republic: Kosh-Agach district: 1 mаle, uррer раrt оf Nаrуn-Gоl River, 2520 m, 49°49'N 88°13'Е, 16–19.vii.2009, leg. V. Sоrоkinа; Shebalino district: 1 femаle, envirоns оf Shebаlinо, Diektiek villаge, Gоrdubа River, 957 m, 51°17'N 85°37'Е, 27.vi.2009, leg. V. Sоrоkinа.
Remarks. New reсоrd frоm the Altаi.
description: Published as part of Sorokina, Vеra S., 2018, Eleven new species of Spilogona Schnabl, 1911 (Diptera, Muscidae) from the Altai Mountains of Russia, with key to species, pp. 201-250 in Zootaxa 4410 (2) on page 242, DOI: 10.11646/zootaxa.4410.2.1, http://zenodo.org/record/1221458
Grammedessa stillativentris
Creators: name: Castro-Huertas, Valentina
name: Grazia, Jocelia
name: Forero, Dimitri
name: Fernández, Fernando
name: Schwertner, Cristiano F.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Pentatomidae
Grammedessa
Grammedessa stillativentris

description: Grammedessa stillativentris (Breddin, 1905) [Fig. 51]
Distribution. Colombia and Venezuela.
Distribution in Colombia. Unknown. This species was recorded from Colombia by Correia & Fernandes (2016), but without specific locality.
Remarks. Grammedessa stillativentris has the dorsal surface of the body green with dark spots associated to punctures uniformly distributed, the ventral surface greenish yellow with spots associated with punctures brown to black, and the metasternal process is spotted only in the branches of the anterior bifurcation.
References. Correia & Fernandes 2016.
description: Published as part of Castro-Huertas, Valentina, Grazia, Jocelia, Forero, Dimitri, Fernández, Fernando & Schwertner, Cristiano F., 2022, Stink bugs (Hemiptera: Heteroptera: Pentatomidae) of Colombia: An annotated checklist of species, pp. 1-88 in Zootaxa 5097 (1) on page 34, DOI: 10.11646/zootaxa.5097.1.1, http://zenodo.org/record/6036639
Additional file 1: of A study of human resource competencies required to implement community rehabilitation in less resourced settings
Creators: name: Brynne Gilmore
name: MacLachlan, Malcolm
name: McVeigh, Joanne
name: Chiedza McClean
name: Carr, Stuart
name: Duttine, Antony
name: Hasheem Mannan
name: McAuliffe, Eilish
name: Gubela Mji
name: Eide, Arne
name: Karl-Gerhard Hem
name: Gupta, Neeru
Publisher: name: Figshare
Year: 2017
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Hematology
subject: Virology

description: Finalised search terms. (DOCX 122Â kb)
An Investigation of Reprogramming for Cross-Language Adaptation in Speaker Verification Systems
Creators: name: Li, Jingyu
name: Chiu, Aemon Yat Fei
name: Lee, Tan
Publisher: name: arXiv
Year: 2024
Subjects: subject: Audio and Speech Processing (eess.AS)
subject: Sound (cs.SD)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Computer and information sciences

description: Language mismatch is among the most common and challenging domain mismatches in deploying speaker verification (SV) systems. Adversarial reprogramming has shown promising results in cross-language adaptation for SV. The reprogramming is implemented by padding learnable parameters on the two sides of input speech signals. In this paper, we investigate the relationship between the number of padded parameters and the performance of the reprogrammed models. Sufficient experiments are conducted with different scales of SV models and datasets. The results demonstrate that reprogramming consistently improves the performance of cross-language SV, while the improvement is saturated or even degraded when using larger padding lengths. The performance is mainly determined by the capacity of the original SV models instead of the number of padded parameters. The SV models with larger scales have higher upper bounds in performance and can endure longer padding without performance degradation.
description: Accepted by ISCSLP 2024
Combined Surface Flux Transport and Helioseismic Far-side Active Region Model (FARM)
Creators: name: Yang, Dan
name: Heinemann, Stephan G.
name: Cameron, Robert H.
name: Gizon, Laurent
Publisher: name: arXiv
Year: 2024
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Maps of the magnetic field at the Sun's surface are commonly used as boundary conditions in space-weather modeling. However, continuous observations are only available from the Sun's Earth-facing side. One commonly used approach to mitigate the lack of far-side information is to apply a surface flux transport (SFT) model to model the evolution of the magnetic field as the Sun rotates. Helioseismology can image active regions on the far side using acoustic oscillations, and hence has the potential to improve the modeled surface magnetic field. In this study, we propose a novel approach for estimating magnetic fields of active regions on the Sun's far side based on seismic measurements, and then include them into a SFT model. To calibrate seismic signal to magnetic field, we apply our SFT model to line-of-sight magnetograms from SDO/HMI to obtain reference maps of global magnetic fields. The resulting maps are compared with seismic maps on the Sun's far side computed using helioseismic holography. The spatial structure of the magnetic field within an active region is reflected in the spatial structure of seismic phase shifts. We assign polarities to the unipolar magnetic-field concentrations based on Hale's law and require approximate flux balance between the two polarities. From 2010 to 2024, we modeled 859 active regions, with an average total unsigned flux of $7.84\cdot 10^{21}$ Mx and an average area of $4.48\cdot 10^{10}$ km$^{2}$. Approximately $4.2\%$ of the active regions were found to have an anti-Hale configuration, which we manually corrected. Comparisons between modeled open-field areas and EUV observations reveal a substantial improvement in agreement when far-side active regions are included. This proof of concept study demonstrates the potential of the ``combined surface flux transport and helioseismic Far-side Active Region Model'' (FARM) to improve space-weather modeling.
description: 18 pages, 10 figures. The abstract in the metadata is slightly different from the actual one (see paper) due to the character limit set by arXiv
Hypoxys Amyot & Serville 1843
Creators: name: Castro-Huertas, Valentina
name: Grazia, Jocelia
name: Forero, Dimitri
name: Fernández, Fernando
name: Schwertner, Cristiano F.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Pentatomidae
Hypoxys

description: Hypoxys Amyot & Serville, 1843 [Fig. 52]
The genus is very similar to Edessa, but Hypoxys has the antennal segment II longer than antennal segment III; the prothorax has the posterior angles acute but flattened and a little salient; and the abdomen is dorsally yellow, sometimes the lateral margin is black (Nunes et al. 2020).
description: Published as part of Castro-Huertas, Valentina, Grazia, Jocelia, Forero, Dimitri, Fernández, Fernando & Schwertner, Cristiano F., 2022, Stink bugs (Hemiptera: Heteroptera: Pentatomidae) of Colombia: An annotated checklist of species, pp. 1-88 in Zootaxa 5097 (1) on page 34, DOI: 10.11646/zootaxa.5097.1.1, http://zenodo.org/record/6036639
Searching for HI around MHONGOOSE Galaxies via Spectral Stacking
Creators: name: Veronese, S.
name: de Blok, W. J. G.
name: Healy, J.
name: Kleiner, D.
name: Marasco, A.
name: Maccagni, F. M.
name: Kamphuis, P.
name: Brinks, E.
name: Holwerda, B. W.
name: Zabel, N.
name: Chemin, L.
name: Adams, E. A. K.
name: Kurapati, S.
name: Sorgho, A.
name: Spekkens, K.
name: Combes, F.
name: Pisano, D. J.
name: Walter, F.
name: Amram, P.
name: Bigiel, F.
name: Wong, O. I.
name: Athanassoula, E.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: The observed star formation rates of galaxies in the Local Universe suggests that they are replenishing their gas reservoir across cosmic time. Cosmological simulations predict that this accretion of fresh gas can occur in a hot or a cold mode, yet the existence of low column density ($\sim10^{17}$ cm$^{-2}$) neutral atomic hydrogen (HI) tracing the cold mode has not been unambiguously confirmed by observations. We present the application of unconstrained spectral stacking to attempt to detect the emission from this HI in the Circum-Galactic Medium (CGM) and Inter-Galactic Medium (IGM) of 6 nearby star forming galaxies from the MHONGOOSE sample for which full-depth observations are available. Our stacking procedure consists of a standard spectral stacking algorithm coupled with a one-dimensional spectral line finder designed to extract reliable signal close to the noise level. In agreement with previous studies, we found that the amount of signal detected outside the HI disk is much smaller than implied by simulations. Furthermore, the column density limit that we achieve via stacking ($\sim10^{17}$ cm$^{-2}$) suggests that direct detection of the neutral CGM/IGM component might be challenging in the future, even with the next generation of radio telescopes.
description: Accepted for publication in Astronomy & Astrophysics
Distinguishing super-Nyquist frequencies via their temporal variation in $γ$ Doradus stars from continuous photometry
Creators: name: Wang, Xuan
name: Zong, Weikai
name: Ma, Xiao-Yu
name: Charpinet, Stéphane
name: Wu, Tao
name: Wang, Haotian
Publisher: name: arXiv
Year: 2024
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: As mixed with real pulsations, the reflection of super-Nyquist frequencies (SNFs) pose a threat to asteroseismic properties. Although SNFs have been studied in several pulsating stars, a systematic survey remains scarcely explored. Here we propose a method to identify SNFs from Kepler and TESS photometry by characterizing their periodic frequency modulations using a sliding Fourier transform. After analyzing long cadence photometry in the Kepler legacy, we have identified 304 SNFs in 56 stars from 45607 frequencies in $\sim600$ $γ$ Doradus stars, corresponding to a fraction of approximately $0.67\%$ and $9.2\%$, respectively. Most SNFs are detected in the frequency range of pressure mode over 120 $μ$Hz and the fraction of SNF detection increases as frequency up to $\sim7\%$. We barely found two potential SNFs mixed with gravity modes in two $γ$ Doradus stars. These findings indicate that SNFs have a negligible impact on the global seismic properties, such as those derived from period spacing in $γ$ Doradus stars. However, we stress that SNFs must be carefully and systematically examined by this method in other pulsating stars, particularly $δ$ Scuti and hot B subdwarf stars, to establish a solid foundation for precise asteroseismolgy of various types of pulsators.
description: 7 pages, 6 figures, accepted for publication in A&A
title: A Case of Mistaken Identity: Biomarkers for High Risk Premalignant Breast Lesions
Creators: name: Jerry, D. Joseph
name: Simin, Karl
Publisher: name: eScholarship@UMMS
Year: 2013

description: Discusses projects to develop biomarkers to predict atypical hyperplasias that may progress to invasive breast cancer. This presentation is part of the retreat mini-symposium entitled: Biomarker Discovery and Targeted Therapeutics in Cancer.
HiFAST: An HI Data Calibration and Imaging Pipeline for FAST III. Standing Wave Removal
Creators: name: Xu, Chen
name: Wang, Jie
name: Jing, Yingjie
name: Li, Fujia
name: Gan, Hengqian
name: Liu, Ziming
name: Liang, Tiantian
name: Chen, Qingze
name: Liu, Zerui
name: Hou, Zhipeng
name: Hu, Hao
name: Hu, Huijie
name: Huang, Shijie
name: Jiang, Peng
name: Zhang, Chuan-Peng
name: Zhu, Yan
Publisher: name: arXiv
Year: 2024
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: The standing waves existed in radio telescope data are primarily due to reflections among the instruments, which significantly impact the spectrum quality of the Five-hundred-meter Aperture Spherical radio Telescope (FAST). Eliminating these standing waves for FAST is challenging given the constant changes in their phases and amplitudes. Over a ten-second period, the phases shift by 18$^{\circ}$ while the amplitudes fluctuate by 6 mK. Thus, we developed the fast Fourier transform (FFT) filter method to eliminate these standing waves for every individual spectrum. The FFT filter can decrease the root mean square (RMS) from 3.2 to 1.15 times the theoretical estimate. Compared to other methods such as sine fitting and running median, the FFT filter achieves a median RMS of approximately 1.2 times the theoretical expectation and the smallest scatter at 12%. Additionally, the FFT filter method avoids the flux loss issue encountered with some other methods. The FFT is also efficient in detecting harmonic radio frequency interference (RFI). In the FAST data, we identified three distinct types of harmonic RFI, each with amplitudes exceeding 100 mK and intrinsic frequency periods of 8.1, 0.5, and 0.37 MHz, respectively. The FFT filter, proven as the most effective method, is integrated into the HI data calibration and imaging pipeline for FAST (HiFAST, https://hifast.readthedocs.io).
description: 16 pages, 12 figures; accepted by RAA
Additional file 35: of Metagenomic characterization of ambulances across the USA
Creators: name: OâHara, Niamh
name: Reed, Harry
name: Afshinnekoo, Ebrahim
name: Harvin, Donell
name: Caplan, Nora
name: Rosen, Gail
name: Frye, Brook
name: Woloszynek, Stephen
name: Ounit, Rachid
name: Levy, Shawn
name: Butler, Erin
name: Mason, Christopher
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Marine Biology

description: Supplemental Methods. (DOCX 32Â kb)
Assessing the processes behind planet engulfment and its imprints
Creators: name: Soares, B. M. T. B.
name: Adibekyan, V.
name: Mordasini, C.
name: Deal, M.
name: Sousa, S. G.
name: Delgado-Mena, E.
name: Santos, N. C.
name: Dorn, C.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Throughout a planetary system's formation evolution, some of the planetary material may end up falling into the host star and be engulfed by it, leading to a potential variation of the stellar composition. The present study explores how planet engulfment may impact the chemical composition of the stellar surface and discusses what would be the rate of events with an observable imprint, for Sun-like stars. We use data from the NGPPS calculations by the Generation III Bern model to analyse the conditions under which planet engulfment may occur. Additionally, we use stellar models computed with Cesam2k20 to account for how the stellar internal structure and its processes may affect the dilution of the signal caused by planet engulfment. Our results show that there are three different phases associated to different mechanisms under which engulfment events may happen. Moreover, systems that undergo planet engulfment are more likely to come from protoplanetary disks that are more massive and more metal-rich than non-engulfing systems. Engulfment events leading to an observable signal happen after the dissipation of the protoplanetary disk when the convective envelope of the stars becomes thinner. With the stellar convective layer shrinking as the star evolves in the main sequence, they display a higher variation of chemical composition, which also correlates with the amount of engulfed material. By accounting for the physical processes happening in the stellar interior and in the optimistic case of being able to detect variations above 0.02 dex in the stellar composition, we find an engulfment rate no higher than $20\%$ for Sun-like stars that may reveal detectable traces of planet engulfment. Engulfment events that lead to an observable variation of the stellar composition are rare due to the specific conditions required to result in such signatures.
description: Accepted to A&A journal
Additional file 33: of Metagenomic characterization of ambulances across the USA
Creators: name: O’Hara, Niamh
name: Reed, Harry
name: Afshinnekoo, Ebrahim
name: Harvin, Donell
name: Caplan, Nora
name: Rosen, Gail
name: Frye, Brook
name: Woloszynek, Stephen
name: Ounit, Rachid
name: Levy, Shawn
name: Butler, Erin
name: Mason, Christopher
Publisher: name: Figshare
Year: 2017
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Figure S14. Boxplot of alpha diversity across surfaces (Shannon index calculated based on Metaphlan2 results). Surface did not have a significant effect on alpha diversity (univariate ANOVA with surfaces N
Pulsating ultraluminous X-ray sources: modeling the thermal emission and polarization properties
Creators: name: Conforti, S.
name: Zampieri, L.
name: Taverna, R.
name: Turolla, R.
name: Brice, N.
name: Pintore, F.
name: Israel, G. L.
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Ultraluminous X-ray sources (ULXs) are enigmatic sources first discovered in the 1980s in external galaxies. They are characterized by their extraordinarily high X-ray luminosity, which often exceeds $10^{40}\, \rm{erg \; s^{-1}}$. Our study aims to obtain more information about pulsating ULXs (PULXs), first of all, their viewing geometry, since it affects almost all the observables, such as the flux, the pulsed fraction, the polarization degree (PD), and polarization angle (PA). We present a simplified model, which primarily describes the thermal emission from an accreting, highly magnetized neutron star, simulating the contributions of an accretion disk and an accretion envelope surrounding the star magnetosphere, both described by a multicolor blackbody. Numerical calculations are used to determine the flux, PD, and PA of the emitted radiation, considering various viewing geometries. The model predictions are then compared to the observed spectra of two PULXs, M51 ULX-7 and NGC 7793 P13. We identified the best fitting geometries for these sources, obtaining values of the pulsed fraction and the temperature at the inner radius of the disk compatible with those obtained from previous works. We also found that measuring the polarization observables can give considerable additional information on the source.
description: 17 pages, 11 figures, Accepted for publication in A&A
Developmental trauma and adverse childhood experiences
Creators: name: Alijah, Zahra
Publisher: name: University of Manchester
Year: 2024
Subjects: classificationCode: 390407
subject: Inclusive education
classificationCode: 390412
subject: Teacher and student wellbeing
classificationCode: 390302
subject: Early childhood education
classificationCode: 390304
subject: Primary education
classificationCode: 390306
subject: Secondary education
classificationCode: 390307
subject: Teacher education and professional development of educators
classificationCode: 390201
subject: Education policy
classificationCode: 390102
subject: Curriculum and pedagogy theory and development

description: This workshop session took place at the ITET 2024 Annual PGCE Conference Inclusion & Inspiration - Education for Social Justice. 12 January 2024. University of Manchester. Zahra discussed developmental trauma and adverse childhood experiences (ACEs) along with the neuro-sequential model and how it might be used by teachers and others at school. In her session, she considered the current challenges for children with developmental trauma and ACEs accessing and navigating mainstream settings.
Enantioselective OTUD7B fragment discovery through chemoproteomics screening and high-throughput optimisation.
Creators: name: Vuorinen, Aini
name: Kennedy, Cassandra R
name: McPhie, Katherine A
name: McCarthy, William
name: Pettinger, Jonathan
name: Skehel, J Mark
name: House, David
name: Bush, Jacob T
name: Rittinger, Katrin
Publisher: name: The Francis Crick Institute
Year: 2025
Subjects: classificationCode: Biochemistry & Proteomics
subject: Biochemistry & Proteomics
classificationCode: Chemical Biology & High Throughput
subject: Chemical Biology & High Throughput

description: Deubiquitinating enzymes (DUBs) are key regulators of cellular homoeostasis, and their dysregulation is associated with several human diseases. The ovarian tumour protease (OTU) family of DUBs are biochemically well-characterised and of therapeutic interest, yet only a few tool compounds exist to study their cellular function and therapeutic potential. Here we present a chemoproteomics fragment screening platform for identifying novel DUB-specific hit matter, that combines activity-based protein profiling with high-throughput chemistry direct-to-biology optimisation to enable rapid elaboration of initial fragment hits against OTU DUBs. Applying these approaches, we identify an enantioselective covalent fragment for OTUD7B, and validate it using chemoproteomics and biochemical DUB activity assays.
Additional file 34: of Metagenomic characterization of ambulances across the USA
Creators: name: O’Hara, Niamh
name: Reed, Harry
name: Afshinnekoo, Ebrahim
name: Harvin, Donell
name: Caplan, Nora
name: Rosen, Gail
name: Frye, Brook
name: Woloszynek, Stephen
name: Ounit, Rachid
name: Levy, Shawn
name: Butler, Erin
name: Mason, Christopher
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Cell Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified

description: Figure S15. Potential factors driving variation in beta diversity (calculated using MetaPhlAn2/CLARK overlap). Beta diversity was calculated with relative abundances, using the VEGAN package in R. Data were standardized [0,1] and balanced through random sampling (for each region, n = 36; for each surface, n = 25). (A) By surface, (B) by region, (C) Correlation plot using Spearman’s rank coefficient, including only species that had total relative abundance > 10, P
Lecithocera raphidica Gozmany 1978
Creators: name: Yu, Shuai
name: Wang, Shuxia
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Lecithocera
Lecithocera raphidica

description: Lecithocera raphidica Gozmány, 1978
Lecithocera raphidica Gozmány, 1978: 106. TL: China (Shanghai). TD: ZFMK.
Distribution
China (Shanghai).
description: Published as part of Yu, Shuai & Wang, Shuxia, 2024, The genus Lecithocera (Lepidoptera: Lecithoceridae) from China, with descriptions of twenty-one new species, pp. 1-74 in European Journal of Taxonomy 924 on page 67, DOI: 10.5852/ejt.2024.924.2447, http://zenodo.org/record/10803382
Exponential Moving Average of Weights in Deep Learning: Dynamics and Benefits
Creators: name: Morales-Brotons, Daniel
name: Vogels, Thijs
name: Hendrikx, Hadrien
Publisher: name: arXiv
Year: 2024
Subjects: subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: Weight averaging of Stochastic Gradient Descent (SGD) iterates is a popular method for training deep learning models. While it is often used as part of complex training pipelines to improve generalization or serve as a `teacher' model, weight averaging lacks proper evaluation on its own. In this work, we present a systematic study of the Exponential Moving Average (EMA) of weights. We first explore the training dynamics of EMA, give guidelines for hyperparameter tuning, and highlight its good early performance, partly explaining its success as a teacher. We also observe that EMA requires less learning rate decay compared to SGD since averaging naturally reduces noise, introducing a form of implicit regularization. Through extensive experiments, we show that EMA solutions differ from last-iterate solutions. EMA models not only generalize better but also exhibit improved i) robustness to noisy labels, ii) prediction consistency, iii) calibration and iv) transfer learning. Therefore, we suggest that an EMA of weights is a simple yet effective plug-in to improve the performance of deep learning models.
description: 27 pages, 9 figures. Accepted at TMLR, April 2024
Hypoxys quadridens
Creators: name: Castro-Huertas, Valentina
name: Grazia, Jocelia
name: Forero, Dimitri
name: Fernández, Fernando
name: Schwertner, Cristiano F.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Pentatomidae
Hypoxys
Hypoxys quadridens

description: Hypoxys quadridens (Fabricius, 1803)
Distribution. Colombia, Venezuela, Surinam, French Guiana, and Brazil.
Distribution in Colombia. Cundinamarca.
Remarks. Hypoxys quadridens has the pygophore with an expansion of the ventral rim acuminate and flat, the proctiger has a tuft of setae separated by a conspicuous tumid ridge, and the sutural margin of the gonocoxites 8 has V-shaped.
References. Nunes et al. 2020.
description: Published as part of Castro-Huertas, Valentina, Grazia, Jocelia, Forero, Dimitri, Fernández, Fernando & Schwertner, Cristiano F., 2022, Stink bugs (Hemiptera: Heteroptera: Pentatomidae) of Colombia: An annotated checklist of species, pp. 1-88 in Zootaxa 5097 (1) on page 34, DOI: 10.11646/zootaxa.5097.1.1, http://zenodo.org/record/6036639
Radii, masses, and transit-timing variations of the three-planet system orbiting the naked-eye star TOI-396
Creators: name: Bonfanti, A.
name: Amateis, I.
name: Gandolfi, D.
name: Borsato, L.
name: Egger, J. A.
name: Cubillos, P. E.
name: Armstrong, D.
name: Leão, I. C.
name: Fridlund, M.
name: Martins, B. L. Canto
name: Sousa, S. G.
name: De Medeiros, J. R.
name: Fossati, L.
name: Adibekyan, V.
name: Cameron, A. Collier
name: Grziwa, S.
name: Lam, K. W. F.
name: Goffo, E.
name: Nielsen, L. D.
name: Rodler, F.
name: Alarcon, J.
name: Lillo-Box, J.
name: Cochran, W. D.
name: Luque, R.
name: Redfield, S.
name: Santos, N. C.
name: Barros, S. C. C.
name: Bayliss, D.
name: Dumusque, X.
name: Keniger, M. A. F.
name: Livingston, J.
name: Murgas, F.
name: Nowak, G.
name: Osborn, A.
name: Osborn, H. P.
name: Pallé, E.
name: Persson, C. M.
name: Serrano, L. M.
name: Strøm, P. A.
name: Udry, S.
name: Wheatley, P. J.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: TOI-396 is an F6V star ($V\approx6.4$) orbited by three transiting planets. The orbital periods of the two innermost planets are close to the 5:3 commensurability ($P_b \sim3.6$ d and $P_c \sim6.0$ d). To measure the masses of the three planets, refine their radii, and investigate whether planets b and c are in MMR, we carried out HARPS RV observations and retrieved photometric data from TESS. We extracted the RVs via a skew-normal fit onto the HARPS CCFs and performed an MCMC joint analysis of the Doppler measurements and transit photometry, while employing the breakpoint method to remove stellar activity from the RV time series. We also performed a thorough TTV dynamical analysis of the system. Our analysis confirms that the three planets have similar sizes: $R_b=2.004_{-0.047}^{+0.045}R_{\oplus}$; $R_c=1.979_{-0.051}^{+0.054}R_{\oplus}$; $R_d=2.001_{-0.064}^{+0.063}R_{\oplus}$. For the first time, we have determined the RV masses for TOI-396b and d: $M_b=3.55_{-0.96}^{+0.94}M_{\oplus}$ ($ρ_b=2.44_{-0.68}^{+0.69}$ g cm$^{-3}$) and $M_d=7.1\pm1.6M_{\oplus}$ ($ρ_d=4.9_{-1.1}^{+1.2}$ g cm$^{-3}$). Our results suggest a quite unusual system architecture, with the outermost planet being the densest. The Doppler reflex motion induced by TOI-396c remains undetected in our RV time series, likely due to the proximity of $P_c$ to the star's rotation period ($P_{\mathrm{rot}}=6.7\pm1.3$ d). We also discovered that TOI-396b and c display significant TTVs. While the TTV dynamical analysis returns a formally precise mass for TOI-396c ($M_{c,\mathrm{dyn}}=2.24^{+0.13}_{-0.67}M_{\oplus}$), the result might not be accurate owing to the poor sampling of the TTV phase. We also conclude that TOI-396b and c are close to but out of the 5:3 MMR. Our numerical simulation suggests TTV semi-amplitudes of up to 5 hours over a temporal baseline of $\sim$5.2 years.
description: 25 pages (7 in the Appendix; also available electronically), 15 Figures (2 in the Appendix), 10 Tables (5 in the Appendix). Accepted for publication in A&A
Lecithocera rotundata Gozmany 1978
Creators: name: Yu, Shuai
name: Wang, Shuxia
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Lecithocera
Lecithocera rotundata

description: Lecithocera rotundata Gozmány, 1978
Lecithocera rotundata Gozmány, 1978: 116. TL: China (Zhejiang). TD: ZFMK.
Distribution
China (Jiangxi, Taiwan, Zhejiang) (Wu 1997; Park 1999), Japan (Sakamaki 2013), Vietnam (Park et al. 2016).
description: Published as part of Yu, Shuai & Wang, Shuxia, 2024, The genus Lecithocera (Lepidoptera: Lecithoceridae) from China, with descriptions of twenty-one new species, pp. 1-74 in European Journal of Taxonomy 924 on page 68, DOI: 10.5852/ejt.2024.924.2447, http://zenodo.org/record/10803382
Hypoxys oxyacanthus
Creators: name: Castro-Huertas, Valentina
name: Grazia, Jocelia
name: Forero, Dimitri
name: Fernández, Fernando
name: Schwertner, Cristiano F.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Pentatomidae
Hypoxys
Hypoxys oxyacanthus

description: Hypoxys oxyacanthus (Breddin, 1904)
Distribution. Colombia, Surinam, French Guiana, Ecuador, Peru, Brazil, Bolivia, Paraguay, and Argentina.
Distribution in Colombia. Meta.
Remarks. Hypoxys oxyacanthus has the head five times wider than the humeral angle, and the abdomen ventrally has intersegmental dark stripes.
References. Nunes et al. 2020.
description: Published as part of Castro-Huertas, Valentina, Grazia, Jocelia, Forero, Dimitri, Fernández, Fernando & Schwertner, Cristiano F., 2022, Stink bugs (Hemiptera: Heteroptera: Pentatomidae) of Colombia: An annotated checklist of species, pp. 1-88 in Zootaxa 5097 (1) on page 34, DOI: 10.11646/zootaxa.5097.1.1, http://zenodo.org/record/6036639
Spilogona orthosurstyla Xue & Tian 1988
Creators: name: Sorokina, Vеra S.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Muscidae
Spilogona
Spilogona orthosurstyla

description: Spilogona orthosurstyla Xue & Tian, 1988
Figs 20D, 21D, 22D
Material examined. Altai Republic: Turochak district: 1 mаle, 30 km SW Iоgасh, 1600 m, 51°31'N 87°23'Е, 21.vi.2003, leg. V. Sоrоkinа.
Remarks. New reсоrd frоm the Altаi аnd Russiа. The sрeсies wаs рreviоus knоwn frоm Chinа (Hebei, Shаnxi) (Yu & Xue 2015).
description: Published as part of Sorokina, Vеra S., 2018, Eleven new species of Spilogona Schnabl, 1911 (Diptera, Muscidae) from the Altai Mountains of Russia, with key to species, pp. 201-250 in Zootaxa 4410 (2) on page 242, DOI: 10.11646/zootaxa.4410.2.1, http://zenodo.org/record/1221458
On the number of small Steiner triple systems with Veblen points
Creators: name: Galici, Mario
name: Filippone, Giuseppe
Publisher: name: arXiv
Year: 2024
Subjects: subject: Combinatorics (math.CO)
subject: Group Theory (math.GR)
subject: FOS: Mathematics
subject: 05B07, 20N05, 51E10

description: The concept of Schreier extensions of loops was introduced in the general case in [11] and, more recently, it has been explored in the context of Steiner loops in [6]. In the latter case, it gives a powerful method for constructing Steiner triple systems containing Veblen points. Counting all Steiner triple systems of order v is an open problem for v>21. In this paper, we investigate the number of Steiner triple systems of order 19, 27 and 31 containing Veblen points and we present some examples.
Lecithocera rubigona Park 2006
Creators: name: Yu, Shuai
name: Wang, Shuxia
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Lecithocera
Lecithocera rubigona

description: Lecithocera rubigona Park, 2006
Lecithocera rubigona Park, 2006a: 98. TL: Thailand (Loei Province). TD: ZMUC.
Distribution
China (new record: Zhejiang), Thailand.
description: Published as part of Yu, Shuai & Wang, Shuxia, 2024, The genus Lecithocera (Lepidoptera: Lecithoceridae) from China, with descriptions of twenty-one new species, pp. 1-74 in European Journal of Taxonomy 924 on page 68, DOI: 10.5852/ejt.2024.924.2447, http://zenodo.org/record/10803382
The impact of resistivity on the variability of black hole accretion flows
Creators: name: Nathanail, Antonios
name: Mizuno, Yosuke
name: Contopoulos, Ioannis
name: Fromm, Christian M.
name: Cruz-Osorio, Alejandro
name: Moriyama, Kotaro
name: Rezzolla, Luciano
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Context. The accretion of magnetized plasma onto black holes is a complex and dynamic process, where the magnetic field plays a crucial role. The amount of magnetic flux accumulated near the event horizon significantly impacts the accretion flow behavior. Resistivity, a measure of how easily magnetic fields can dissipate, is thought to be a key factor influencing this process. This work explores the influence of resistivity on accretion flow variability. We investigate simulations reaching the magnetically arrested disk (MAD) limit and those with an initial multi-loop magnetic field configuration. Methods. We employ 3D resistive general relativistic magnetohydrodynamic (GRMHD) simulations to model the accretion process under various regimes, where resistivity has a global uniform value. Results. Our findings reveal distinct flow behaviors depending on resistivity. High resistivity simulations never achieve the MAD state, indicating a disturbed magnetic flux accumulation process. Conversely, low resistivity simulations converge towards the ideal MHD limit. The key results are: i) For the standard MAD model, resistivity plays a minimal role in flow variability, suggesting that flux eruption events dominate the dynamics. ii) High resistivity simulations exhibit strong magnetic field diffusion into the disk, rearranging efficient magnetic flux accumulation from the accretion flow. iii) In multi-loop simulations, resistivity significantly reduces flow variability, which was not expected. However, magnetic flux accumulation becomes more variable due to frequent reconnection events at very low resistivity values. Conclusions. This study shows that resistivity affects how much the flow is distorted due to magnetic field dissipation. Our findings provide new insights into the interplay between magnetic field accumulation, resistivity, variability and the dynamics of black hole accretion.
description: 8 pages, Accepted in A&A
"Give me the code" - Log Analysis of First-Year CS Students' Interactions With GPT - Full interaction logs
Creators: name: Alves, Pedro
name: Pereira Cipriano, Bruno
Publisher: name: Zenodo
Year: 2023
Subjects: LLMs
gpt-3
programming assignments
prompting

description: Full raw interaction logs of students with ChatGPT, in the context of a specific programming exercise for a Data Structures and Algorithms course, during the first semester of 2022/23.

The logs kept the original used language (mostly in Portuguese).

It is also provided:

partial-project-statement.txt -  Part of the project statement, explaining the format of the artists file. This was the information provided to students explaining the problem they should ask GPT for help

log-format-example.txt - This was provided to students as an example of how they should interact with ChatGPT and how that interaction should be recorded in a log file, to be submitted along the project
Lopadusa Stal 1860
Creators: name: Castro-Huertas, Valentina
name: Grazia, Jocelia
name: Forero, Dimitri
name: Fernández, Fernando
name: Schwertner, Cristiano F.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Pentatomidae
Lopadusa

description: Lopadusa Stål, 1860
The genus can be recognized by having the metasternal process not truncated, and the abdominal sternites pale with dark spots (Becker & Grazia 1970).
description: Published as part of Castro-Huertas, Valentina, Grazia, Jocelia, Forero, Dimitri, Fernández, Fernando & Schwertner, Cristiano F., 2022, Stink bugs (Hemiptera: Heteroptera: Pentatomidae) of Colombia: An annotated checklist of species, pp. 1-88 in Zootaxa 5097 (1) on page 34, DOI: 10.11646/zootaxa.5097.1.1, http://zenodo.org/record/6036639