cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Ataenius perforatus Harold 1867
Creators: name: Minor, Pablo
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Aphodiidae
Ataenius
Ataenius perforatus

description: 175 Ataenius perforatus Harold, 1867
Distribution: Mexico (Nayarit); Brazil; Colombia; Costa Rica; El Salvador; Guatemala; Honduras; Panama;
Venezuela.
description: Published as part of Minor, Pablo, 2017, New state records and updated checklist of Aphodiini and Eupariini (Coleoptera: Scarabaeidae: Aphodiinae) from Mexico, pp. 493-514 in Zootaxa 4244 (4) on page 510, DOI: 10.11646/zootaxa.4244.4.3, http://zenodo.org/record/437241
Additional file 7: of Arginine deiminase pathway enzymes: evolutionary history in metamonads and other eukaryotes
Creators: name: Lukáš Novák
name: Zubáčová, Zuzana
name: Karnkowska, Anna
name: Kolisko, Martin
name: Miluše Hroudová
name: Stairs, Courtney
name: Simpson, Alastair
name: Keeling, Patrick
name: Roger, Andrew
name: Čepička, Ivan
name: Hampl, Vladimír
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Topology of the expected species tree of eukaryotes. The tree is unrooted. (PDF 2 kb)
Fusarium poae: Secondary Metabolism and Accessory Chromosomes
Creators: name: Witte, Thomas
Publisher: name: Université d'Ottawa | University of Ottawa
Year: 2024
Subjects: Fusarium poae
Accessory chromosomes
Apicidin
NRPS
Secondary metabolites
metabolomics
biosynthetic gene clusters
fungal plant pathogens
trichothecenes
Fusarium head blight

description: Fusarium poae is of concern to plant pathologists as it is a globally distributed contributor to Fusarium head blight in wheat, barley and oats, and threatens consumers by the production of harmful mycotoxins. Recent characterization of F. poae strain genomic architecture revealed the species harbors small chromosomes with structural features and genetic content consistent with rapidly evolving 'accessory' genomes in plant pathogenic fungi. Termed 'supernumerary' or 'accessory' chromosomes, these dynamic chromosomes can encode transcriptionally active secondary metabolite biosynthetic gene clusters (BGCs), high numbers of transposable elements, and undergo frequent sequence duplications, disruptions, inversions and translocations compared to core chromosomes. The presence of accessory chromosomes with active BGCs is promising for the discovery of novel chemistry within a population via untargeted metabolomic screening, and has implications for the evolution of endophytic and pathogenic fungi. In this thesis research, an untargeted metabolomics profiling method was developed and applied alongside population-level, whole-genome sequencing to analyze the chemistry of Canadian F. poae populations. F. poae metabolomes included a mixture of diverse trichothecene mycotoxins and other secondary metabolites of interest to plant pathogen research. Furthermore, genomic analyses indicated F. poae strains are incapable of producing T-2/HT-2 toxins, strictly regulated trichothecenes which were historically predicted to be produced by F. poae. Telomereto-telomere genome assemblies revealed the presence of highly polymorphic accessory chromosomes with lineage-specific BGCs affecting secondary metabolite profiles detected in vitro and in planta. Ten percent of the profiled F. poae strains were predicted to have an accessory chromosome expressing the BGC for the acutely toxic cyclic peptide apicidin, not previously known to be produced by F. poae. Furthermore, a rare BGC on an accessory chromosome was characterized to produce fusadapamides, novel small peptide secondary metabolites distinguished by their incorporation of L-2,3-diaminopropionic acid (Dap). Dap is a rare, non-proteinogenic amino acid which was not known to be produced by fungi prior to this research. The multi-omics analysis presented in this thesis contributes to the understanding of fungal accessory chromosomes as dynamic genomic reservoirs for unique secondary metabolite diversity within species. The genomic and metabolomic data produced in this research are foundational for further research to understand the biology of F. poae colonization of cereal crop hosts.
Additional file 2: of Novel exonic mutation inducing aberrant splicing in the IL10RA gene and resulting in infantile-onset inflammatory bowel disease: a case report
Creators: name: Yanagi, Tadahiro
name: Mizuochi, Tatsuki
name: Yugo Takaki
name: Eda, Keisuke
name: Mitsuyama, Keiichi
name: Ishimura, Masataka
name: Takada, Hidetoshi
name: Shouval, Dror
name: Griffith, Alexandra
name: Snapper, Scott
name: Yushiro Yamashita
name: Yamamoto, Ken
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified

description: Primer sets for mutation screening of IL10RA and IL10RB genes. (DOCX 15 kb)
Health System Transformation in the Education of Health Professionals
Creators: name: Chisholm, Ashley
Publisher: name: Université d'Ottawa | University of Ottawa
Year: 2024
Subjects: Health System Transformation
Health Professions Education
Mixed-methods

description: The need for health systems transformation is a health policy priority in Canada. Healthcare spending is growing at an unsustainable rate, and health systems ranks poorly in areas such as access to care, equity in care, and health outcomes. Policy makers are calling on health professionals to be accountable to health systems transformation, however, it is unknown whether their education prepares them for this call. This proposed study aims to understand the current state of the literature on health system transformation within the context of the education of health professionals through a two-phase explanatory mixed-methods study to address the following research questions: • What is the current state of health system transformation in the education of health professionals? • Based on the current state of the literature/evidence, what areas are important to consider for curriculum development and future programs of research on health system transformation in the education of health professionals? -- The study included two phases. In Phase I, a scoping review identified 44 peer reviewed articles on the topic. In Phase II, I conducted a mixed-methods stakeholder consultation that included a one-time online survey (n=77) and key informant interviews (n=23) to enhance and validate the findings of my literature as well as identify stakeholders' concerns on the topic. This research discusses the current state of health system transformation in the education of health professionals and describes key areas for future curriculum development and programs of research. Furthermore, this dissertation presents a comprehensive framework, grounded in the findings of an extensive mixed-methods stakeholder consultation, on the education of health professionals for health system transformation. Such knowledge will provide direction to stakeholders on the resources and activities needed to ensure that health professions education makes informed health systems transformation training decisions.
Additional file 1: of Top 100 cited articles in cardiovascular magnetic resonance: a bibliometric analysis
Creators: name: Khan, Muhammad
name: Waqas Ullah
name: Irbaz Riaz
name: Bhulani, Nizar
name: Manning, Warren
name: Tridandapani, Srini
name: Khosa, Faisal
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy

description: List of top 100 citations. (DOCX 26Â kb)
Integrating high-performing electrochemical transducers in lateral flow assay
Creators: name: Perju, Antonia
name: Wongkaew, Nongnoot
Publisher: name: Universität Regensburg
Year: 2021
Subjects: subject: LABEL-FREE DETECTION; IMMUNOCHROMATOGRAPHIC ASSAY; QUANTITATIVE DETECTION; TEST STRIP; SENSITIVE DETECTION; GOLD NANOPARTICLES; IMMUNOSENSOR; BIOSENSOR; QUANTIFICATION; POINT; Lateral flow assay; Electrochemical detection; Point-of-care devices; Electrochemical transducers; Nanofibers
subject: 540 Chemie

description: Lateral flow assays (LFAs) are the best-performing and best-known point-of-care tests worldwide. Over the last decade, they have experienced an increasing interest by researchers towards improving their analytical performance while maintaining their robust assay platform. Commercially, visual and optical detection strategies dominate, but it is especially the research on integrating electrochemical (EC) approaches that may have a chance to significantly improve an LFA's performance that is needed in order to detect analytes reliably at lower concentrations than currently possible. In fact, EC-LFAs offer advantages in terms of quantitative determination, low-cost, high sensitivity, and even simple, label-free strategies. Here, the various configurations of EC-LFAs published are summarized and critically evaluated. In short, most of them rely on applying conventional transducers, e.g., screen-printed electrode, to ensure reliability of the assay, and additional advances are afforded by the beneficial features of nanomaterials. It is predicted that these will be further implemented in EC-LFAs as high-performance transducers. Considering the low cost of point-of-care devices, it becomes even more important to also identify strategies that efficiently integrate nanomaterials into EC-LFAs in a high-throughput manner while maintaining their favorable analytical performance.
Ataenius picinus Harold 1867
Creators: name: Minor, Pablo
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Aphodiidae
Ataenius
Ataenius picinus

description: 176 Ataenius picinus Harold, 1867
description: Published as part of Minor, Pablo, 2017, New state records and updated checklist of Aphodiini and Eupariini (Coleoptera: Scarabaeidae: Aphodiinae) from Mexico, pp. 493-514 in Zootaxa 4244 (4) on page 510, DOI: 10.11646/zootaxa.4244.4.3, http://zenodo.org/record/437241
Additional file 1: of Arginine deiminase pathway enzymes: evolutionary history in metamonads and other eukaryotes
Creators: name: Lukáš Novák
name: Zubáčová, Zuzana
name: Karnkowska, Anna
name: Kolisko, Martin
name: Miluše Hroudová
name: Stairs, Courtney
name: Simpson, Alastair
name: Keeling, Patrick
name: Roger, Andrew
name: Čepička, Ivan
name: Hampl, Vladimír
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Phylogenetic tree of OTC sequences. The tree based on a 242 positions long protein alignment of 444 sequences was constructed in RAxML using the LG4X + Γ model of substitution. Eukaryotic taxa are highlighted in different colors according to the major group they belong to. The color code is the same as in Fig. 1. The values at nodes represent RAxML bootstrap support/IQ-TREE bootstrap support. Only values above 50 % are shown. Black circles indicate support of 100 %/100 %. Species with multiple sequences included: Alexandrium tamarense 1 – CAMPEP 0186340278; Alexandrium tamarense 2 – CAMPEP 0186191854; Alexandrium tamarense 3 – CAMPEP 0186247540; Durinskia baltica 1 – CAMPEP 0200033980; Durinskia baltica 2 – CAMPEP 0200081736; Euglena gracilis 1 – c20598 g1 i1; Euglena gracilis 2 – c34673 g1 i6; Eutreptiella gymnastica-like 1 – CAMPEP 0200420840; Eutreptiella gymnastica-like 2 – CAMPEP 0200409666; Karenia brevis 1 – CAMPEP 0188881430; Karenia brevis 2 – CAMPEP 0188950444; Karlodinium micrum 1 – CAMPEP 0200795676; Karlodinium micrum 2 – CAMPEP 0200767534. The tree is rooted with sequences of bacterial aspartate carbamoyltransferase (ATC; EC 2.1.3.2). (PDF 506 kb)
Additional file 1: of Novel exonic mutation inducing aberrant splicing in the IL10RA gene and resulting in infantile-onset inflammatory bowel disease: a case report
Creators: name: Yanagi, Tadahiro
name: Mizuochi, Tatsuki
name: Yugo Takaki
name: Eda, Keisuke
name: Mitsuyama, Keiichi
name: Ishimura, Masataka
name: Takada, Hidetoshi
name: Shouval, Dror
name: Griffith, Alexandra
name: Snapper, Scott
name: Yushiro Yamashita
name: Yamamoto, Ken
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Genetic analysis of the IL10RA and IL10RB genes. (DOCX 13 kb)
Ataenius platensis Blanchard 1847
Creators: name: Minor, Pablo
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy

description: Distribution: Mexico (Chiapas, Veracruz); Subcosmopolitan. 177 Ataenius platensis (Blanchard, 1847)
Distribution: Mexico (Baja California Sur, Chiapas, Nuevo León, Oaxaca, San Luis Potosí, Tamaulipas, Veracruz);
Subcosmopolitan.
description: Published as part of Minor, Pablo, 2017, New state records and updated checklist of Aphodiini and Eupariini (Coleoptera: Scarabaeidae: Aphodiinae) from Mexico, pp. 493-514 in Zootaxa 4244 (4) on page 510, DOI: 10.11646/zootaxa.4244.4.3, http://zenodo.org/record/437241
Catalytic Generation of Carbanions through Carbonyl Umpolung. Katalytische Erzeugung von Carbanionen durch Carbonyl-Umpolung
Creators: name: Wang, Shun
name: König, Burkhard
Publisher: name: Universität Regensburg
Year: 2021
Subjects: subject: WOLFF-KISHNER REDUCTION; ALDEHYDE TOSYLHYDRAZONES; ELECTROORGANIC CHEMISTRY; ACTIVATED KETONES; PINACOL; IMINES; PHOTOREDUCTION; CYCLIZATIONS; ALKYLATION; REACTIVITY; carbanions; photocatalysis; Umpolung; Wolff-Kishner reaction
subject: 540 Chemie

description: Carbonyl Umpolung is a powerful strategy in organic chemistry to construct complex molecules. Over the last few years, versatile catalytic approaches for the generation of acyl anion equivalents from carbonyl compounds have been developed, but methods to obtain alkyl carbanions from carbonyl compounds in a catalytic fashion are still at an early stage. This Minireview summarizes recent progress in the generation of alkyl carbanions through catalytic carbonyl Umpolung. Two different catalytic approaches can be utilized to enable the generation of alkyl carbanions from carbonyl compounds: the catalytic Wolff-Kishner reaction and the catalytic single-electron reduction of carbonyl compounds and imines. We discuss the reaction scope, mechanistic insights, and synthetic applications of the methods as well as potential future developments.
Additional file 3: of Arginine deiminase pathway enzymes: evolutionary history in metamonads and other eukaryotes
Creators: name: Lukáš Novák
name: Zubáčová, Zuzana
name: Karnkowska, Anna
name: Kolisko, Martin
name: Miluše Hroudová
name: Stairs, Courtney
name: Simpson, Alastair
name: Keeling, Patrick
name: Roger, Andrew
name: Čepička, Ivan
name: Hampl, Vladimír
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Phylogenetic trees of gene partitions used for concatenation. The values at nodes represent maximum likelihood bootstrap percentages. Eukaryota highlighted in grey. Red taxon names indicate removed sequences. Positions of the particular genes in the alignment: ADI 0–257, OTC 258–499, CK 500–750. The trees are unrooted. (PDF 270 kb)
A Randomized Controlled Trial Assessing the Impact of Transcutaneous Electrical Acupoint Stimulation on Gastrointestinal Motility, Nutritional Status, and Immune Function in Patients Following Cerebrovascular Accident Surgery
Creators: name: Chen, Yuequn
name: A, Shixin
name: Liu, Cheng
name: Zhang, Tao
name: Yang, Jintao
name: Tian, Xin
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Medicine
subject: Cell Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Science Policy
subject: Mental Health

description: Transcutaneous Electrical Acupoint Stimulation (TEAS) is a technique that involves stimulating specific acupoints on the body with electrical currents. It may regulate nerve excitability and improve nerve function. This study aimed to assess the impact of TEAS on gastrointestinal motility, nutrition, and immune function in patients post cerebrovascular accident surgery in the intensive care unit (ICU). A randomized controlled trial included 300 post-cerebrovascular surgery patients at Lishui Central Hospital (January 2021–June 2023). Patients were randomly assigned to TEAS or control groups in a 1:1 ratio. The TEAS group received TEAS at bilateral Zusanli (ST36), Shangjuxu (ST37), Tianshu (ST25), Neiguan (PC6), and Hegu (LI4) according to the International Acupuncture Point Code, plus standard care. The control group received routine enteral nutrition and sham TEAS. Nutritional, immune, and gastrointestinal motility indicators were compared. A randomized controlled trial involving 300 post-surgery patients compared TEAS to sham TEAS, demonstrating significant enhancements (p < 0.05) in immune function and gastrointestinal motility. Compared to the control group, the TEAS group showed significant improvements in the patient’s serum nutritional levels (prealbumin, albumin, hemoglobin, and total protein), immune status (IgG, IgA, IgM, and CD4+/CD8+), gastrointestinal motility (daily gastric residual volume, time to achieve target feeding volume, time for nutritional fluid to meet standards, time to first bowel movement, time to first passage of activated charcoal stool, time to reach the defecation volume), and overall condition (the scores of clinical scales and ICU stay duration) (p < 0.05). The TEAS group also experienced a significantly lower incidence of adverse events (p < 0.05). Early TEAS intervention positively impacted recovery, shortened ICU stay, and improved outcomes in patients post cerebrovascular accident surgery.
Additional file 3: of Novel exonic mutation inducing aberrant splicing in the IL10RA gene and resulting in infantile-onset inflammatory bowel disease: a case report
Creators: name: Yanagi, Tadahiro
name: Mizuochi, Tatsuki
name: Yugo Takaki
name: Eda, Keisuke
name: Mitsuyama, Keiichi
name: Ishimura, Masataka
name: Takada, Hidetoshi
name: Shouval, Dror
name: Griffith, Alexandra
name: Snapper, Scott
name: Yushiro Yamashita
name: Yamamoto, Ken
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Functional assay of the IL-10 receptor. (DOCX 14 kb)
OILA PSIXOLOGIYASI
Creators: name: Xalimjanova, Muqaddas
name: Azamjonova, Gulzoda
name: Xabibullayeva, Feruza
name: Abdurahimova, Shahnozaxon
Publisher: name: Zenodo
Year: 2024

description: Ushbu maqolada oila psixologiyasi va uning asosiy yo‘nalishlari, jumladan, oilaviy munosabatlar, tarbiya, konfliktlarni boshqarish, stressni yengish hamda qadriyatlarni rivojlantirish masalalari yoritilgan. Shuningdek, sog‘lom oila muhitini yaratish bo‘yicha tavsiyalar va psixologik yordamning ahamiyati haqida ma’lumot berilgan. Maqola oilaviy munosabatlarni mustahkamlashga qaratilgan.
Excited‐state 2,3‐dichloro‐5,6‐dicyano‐1,4‐benzoquinone (DDQ*) initiated organic synthetic transformations under visible‐light irradiation
Creators: name: Natarajan, Palani
name: König, Burkhard
Publisher: name: Universität Regensburg
Year: 2021
Subjects: subject: ELECTRON-TRANSFER; PHOTOREDOX CATALYSIS; P-BENZOQUINONE; BENZENE; HYDROXYLATION; OXIDATION; ARENES; 2,3-DICHLORO-5,6-DICYANO-P-BENZOQUINONE; REACTIVITY; COMPLEXES; Cross coupling; DDQ; Dehydrogenative coupling; Photooxidation; Quinones
subject: 540 Chemie

description: The one-electron oxidizing capacity of 2,3-dichloro-5,6-dicyano-1,4-benzoquinone (DDQ) improves significantly by visible-light excitation. The exited-state DDQ (DDQ*) even converts benzene, fluoroarenes, heteroarenes, benzyls, and olefins into their corresponding radical cations as well as chloride and other anions into their radicals. These reactive intermediates have been utilized for the generation of C-C and C-X (N, O, or Cl) bonds in the synthesis of valuable organic compounds and natural products. This mini review provides an overview of such DDQ*-initiated organic transformations with their scope and limitations and discusses the proposed reactions mechanisms.
Ataenius pseudousingeri Galante, Stebnicka 2003
Creators: name: Minor, Pablo
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy

description: 178 Ataenius pseudousingeri Galante, Stebnicka, & Verdú, 2003
Distribution: Mexico (Chiapas, Oaxaca); Guatemala.
description: Published as part of Minor, Pablo, 2017, New state records and updated checklist of Aphodiini and Eupariini (Coleoptera: Scarabaeidae: Aphodiinae) from Mexico, pp. 493-514 in Zootaxa 4244 (4) on page 511, DOI: 10.11646/zootaxa.4244.4.3, http://zenodo.org/record/437241
Comparative Study of Complications and Incision Esthetic Satisfaction Between Single-Port Laparoscopy and Traditional Laparoscopy in Benign Gynecological Surgery
Creators: name: Chen, Jian
name: Li, Mengying
name: Lai, Yujiao
name: Xu, Ping
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Marine Biology
subject: Cancer
subject: Mental Health

description: Single-port laparoscopic surgery (SPLS) is an effective, minimally invasive, feasible, and promising surgical technique for the treatment of various benign and malignant gynecological diseases. This study aimed to evaluate the differences in surgical conditions, complications, and esthetic incisions between SPLS and traditional laparoscopic surgery (TLS) in benign gynecological surgeries. Fifty-one eligible patients were included, and their general information (age, surgical approach), surgical conditions (surgical time, blood loss, postoperative first flatus), postoperative pain, and incision healing were collected. There was a significant difference in the results of hysterectomy between the two groups. The surgical time in the SPLS group was significantly shorter than that in the TLS group (p = 0.026). Furthermore, the SPLS group had less blood loss (p < 0.05) and earlier postoperative first flatus (p < 0.05) than the control group. There was no significant difference in postoperative conditions between the two groups. During the follow-up, it was found that the Vancouver Scar Scale score was 8.37 ± 2.30 in the control group and 6.81 ± 2.14 in the study group. The cosmetic effect and satisfaction were better in the SPLS group (p = 0.018). Subgroup analysis showed that in other benign gynecological diseases without uterine lesions, SPLS significantly improved surgical time, intraoperative blood loss, and postoperative first flatus (p < 0.05). SPLS demonstrated good clinical efficacy in benign gynecological surgery, with shorter surgical time, less blood loss, earlier postoperative first flatus, fewer complications, and better cosmetic effects of scars.
Additional file 1: Table S1. of Secretome profiling of Cryptococcus neoformans reveals regulation of a subset of virulence-associated proteins and potential biomarkers by protein kinase A
Creators: name: Geddes, Jennifer
name: Croll, Daniel
name: MĂŠlissa Caza
name: Stoynov, Nikolay
name: Foster, Leonard
name: Kronstad, James
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: 60506 Virology

description: Quantitative proteomic analysis of the secretome of C. neoformans at 16, 48, 72, and 120 hpi under Pka1-repressed (glucose-containing medium) conditions. (DOCX 94 kb)
Additional file 1: of Essential psychiatric medicines: wrong selection, high consumption and social problems
Creators: name: Fulone, Izabela
name: Barberato-Filho, Silvio
name: Santos, Michele Dos
name: Rossi, Carolina De Lima
name: Guyatt, Gordon
name: Lopes, Luciane
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer
subject: Science Policy

description: Tool used to assess the Pharmacy and Therapeutics Committees of the cities. (DOCX 14Â kb)
Electro-mediated PhotoRedox Catalysis for Selective C(sp3)-O Cleavages of Phosphinated Alcohols to Carbanions
Creators: name: Tian, Xianhai
name: Karl, Tobias A.
name: Reiter, Sebastian
name: Yakubov, Shaboz
name: de Vivie-Riedle, Regina
name: König, Burkhard
name: Barham, Joshua Philip
Publisher: name: Universität Regensburg
Year: 2021
Subjects: subject: photoelectrochemistry • olefination • deoxygenation • radical anion • preassembly
subject: 540 Chemie

description: We report a novel example of electro-mediated photoredox catalysis (e-PRC) in the reductive cleavage of C(sp 3 )-O bonds of phosphinated alcohols to alkyl carbanions. As well as deoxygenations, olefinations are reported which are E -selective and can be made Z -selective in a tandem reduction/photosensitization process where both steps are photoelectrochemically promoted. Spectroscopy, computation and catalyst structural variations reveal that our new naphthalene monoimide-type catalyst allows for a more intimate dispersive precomplexation of its radical anion form with the phosphinate substrate, facilitating a reactivity-determining C(sp 3 )-O cleavage. Surprisingly and in contrast to previously reported photoexcited radical anion chemistries, our conditions i) tolerate aryl chlorides/bromides and ii) do not give rise to Birch-type reductions.
Additional file 5: of Arginine deiminase pathway enzymes: evolutionary history in metamonads and other eukaryotes
Creators: name: Lukáš Novák
name: Zubáčová, Zuzana
name: Karnkowska, Anna
name: Kolisko, Martin
name: Miluše Hroudová
name: Stairs, Courtney
name: Simpson, Alastair
name: Keeling, Patrick
name: Roger, Andrew
name: Čepička, Ivan
name: Hampl, Vladimír
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Phylogenetic tree of concatenated ADI, OTC, and CK sequences with Bacteria and Archaea removed. The tree based on a 750 positions long protein alignment of 15 sequences was constructed in RAxML using LG4X + Γ model. The tree is unrooted. (PDF 2 kb)
Additional file 2: of Arginine deiminase pathway enzymes: evolutionary history in metamonads and other eukaryotes
Creators: name: Lukáš Novák
name: Zubáčová, Zuzana
name: Karnkowska, Anna
name: Kolisko, Martin
name: Miluše Hroudová
name: Stairs, Courtney
name: Simpson, Alastair
name: Keeling, Patrick
name: Roger, Andrew
name: Čepička, Ivan
name: Hampl, Vladimír
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Phylogenetic tree of CK sequences. The tree based on a 251 positions long protein alignment of 256 sequences was constructed in RAxML using the LG4X+ Γ model of substitution. Eukaryotic taxa are highlighted in different colors according to the major group they belong to. The color code is the same as in Fig. 1. The values at nodes represent RAxML bootstrap support/IQ-TREE bootstrap support. Only values above 50 % are shown. Black circles indicate support of 100 %/100 %. Vertical black bars indicate well-supported eukaryotic clades: Ch – Chlorophyta; Din – Dinoflagellata; Dip – Diplomonadida; Pa – Parabasalia; Pr – Preaxostyla. Species with multiple sequences included: Giardia intestinalis 1 – GSB 16453; Giardia intestinalis 2 – GL50803 16453; Thalassiosira pseudonana 1 – GI 223995860; Thalassiosira pseudonana 2 – GI 224000745; Trichomonas vaginalis 1 – TVAG 420500; Trichomonas vaginalis 2 – TVAG 261970; Trichomonas vaginalis 3 – TVAG 420510. The tree is unrooted. (PDF 482 kb)
Ataenius quintanaroo Stebnicka 2006
Creators: name: Minor, Pablo
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy

description: 179 Ataenius quintanaroo Stebnicka, 2006 [E]
Distribution: Mexico (Chiapas, Quintana Roo, Yucatán).
description: Published as part of Minor, Pablo, 2017, New state records and updated checklist of Aphodiini and Eupariini (Coleoptera: Scarabaeidae: Aphodiinae) from Mexico, pp. 493-514 in Zootaxa 4244 (4) on page 511, DOI: 10.11646/zootaxa.4244.4.3, http://zenodo.org/record/437241
MOESM1 of The influenza A virus NS genome segment displays lineage-specific patterns in predicted RNA secondary structure
Creators: name: A. Vasin
name: A. Petrova
name: V. Egorov
name: M. Plotnikova
name: S. Klotchenko
name: M. Karpenko
name: O. Kiselev
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 1. List of sequences and RNA second structure forÂ Nt 82â  148.
Physiological markers for immunotherapeutics: a review
Creators: name: Chowdhury, Durlav
name: Das, Ashmita
name: Mishra, Mrityunjay
name: Khutere, Trinkal
name: Bodakhe, Surendra H.
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Hematology

description: Immunotherapy has been advanced through multiple approaches, including immunogenic cytokines, monoclonal antibodies, therapeutic vaccinations, adoptive cell transfer, stem cell transplantation, and oncolytic viruses. This review analyses various strategies in genomics, transcriptomics, single-cell techniques, computational analysis, big data, and imaging technologies for the identification of tumour microbiota and microenvironments. Immunotherapy is becoming acknowledged as a feasible cancer treatment method, facilitating innovative cancer medicines and personalized medicine techniques.
Spatial Propagation Characteristics and Mechanisms of a Nonpenetrated Flaw in Brittle Materials
Creators: name: HAN, ZHENYU
Publisher: name: Monash University
Year: 2024
Subjects: classificationCode: 401902
subject: Geomechanics and resources geotechnical engineering
classificationCode: 370608
subject: Petrophysics and rock mechanics

description: The effects of pre-existing defects such as penetrated cracks, surface cracks and internal cracks on the mechanical behavior of brittle materials, particularly rocks, under complex stress conditions, are comprehensively analyzed, aiming at facilitating the research of rock fracture mechanics and offering valuable scientific insights for the design and management of underground rock structures.
MOESM2 of The influenza A virus NS genome segment displays lineage-specific patterns in predicted RNA secondary structure
Creators: name: A. Vasin
name: A. Petrova
name: V. Egorov
name: M. Plotnikova
name: S. Klotchenko
name: M. Karpenko
name: O. Kiselev
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 2. List of sequences and RNA second structure forÂ â  Nt 497â  564.
Lebertia (Lebertia) ignatowi Sokolow 1930
Creators: name: Wang, Yu
name: Jin, Daochao
name: Guo, Jianjun
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Lebertiidae
Lebertia
Lebertia ignatowi

description: Lebertia (Lebertia) ignatowi Sokolow, 1930 (Fig. 1)
Material examined. Two females (slide numbers XJ-LE-19970801/04) from Kelan River, Altay Prefecture, Xinjiang Uygur Autonomous region, P. R. China (87.135103 E, 48.824092 N), 940 m a.s.l., leg. Daochao Jin, 16- VIII-1997.
Diagnosis. Medial suture Cx-II relatively long. P-2/4 L ratio 0.90–0.94. P-4 robust, ventral setae dividing the segment into equal sectors. III-L-5 and IV-L-5 each bearing 3 swimming setae.
Description. Both sexes (data of the European specimens integrated in parentheses). Integument smooth (Fig. 1B). Medial suture Cx-II relatively long (Cx-I/II mL ratio 0.70–0.94) (Fig. 1A). Cx-II caudal margin rather wide (W 33–48). P-2 stouter (P-2/4 L ratio 0.90–0.94) (Fig. 1C). P-4 robust and cylindrical, the ventral seta insertions divide the ventral margin into 1: 1: 1. IV-L-6 with 2–3 ventral thin setae. III-L-5 and IV-L-5 each bearing 3 swimming setae (Fig. 1F–G).
Habitat. Both running and standing waters.
Distribution. Eastern Europe (Gerecke 2009); China (Xinjiang)—New country record.
1) P-2 shorter than P- 4 in length (P-2/4 L ratio 0.90–0.94 in the Chinese specimen, 0.90 in the European specimen); 2) Cx-I shorter than Cx-II in medial length (Cx-I/II mL ratio 0.87–0.94 in the Chinese specimen, 0.70– 0.90 in the European specimen); 3) Cx-II caudal margin rather wide (W 33–44 in the Chinese specimen, 36–48 in the European specimen).
description: Published as part of Wang, Yu, Jin, Daochao & Guo, Jianjun, 2024, Water mites of the genus Lebertia Neuman (Acari: Hydrachnidia: Lebertiidae) from China, with description of three new species, pp. 231-240 in Zootaxa 5399 (3) on page 232, DOI: 10.11646/zootaxa.5399.3.2, http://zenodo.org/record/10516724
Additional file 4: of Arginine deiminase pathway enzymes: evolutionary history in metamonads and other eukaryotes
Creators: name: Lukáš Novák
name: Zubáčová, Zuzana
name: Karnkowska, Anna
name: Kolisko, Martin
name: Miluše Hroudová
name: Stairs, Courtney
name: Simpson, Alastair
name: Keeling, Patrick
name: Roger, Andrew
name: Čepička, Ivan
name: Hampl, Vladimír
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Phylogenetic tree of concatenated ADI, OTC, and CK sequences. The tree based on a 750 positions long protein alignment of 67 sequences was constructed in RAxML using LG4X + Γ model. Eukaryotic taxa are highlighted in different colors according to the major group they belong to. The color code is the same as in Fig. 1. The values at nodes represent RAxML bootstrap support/IQ-TREE bootstrap support. Only values above 50 % are shown. Black circles indicate support 100 %/100 %. The tree is unrooted. (PDF 272 kb)
Functional Group Variation in tert ‐Butyldiphenylsilanes (TBDPS): Syntheses, Reactivities, and Effects on the Intermolecular Interaction Pattern in the Molecular Crystalline State
Creators: name: Bauer, Jonathan O.
name: Espinosa‐Jalapa, Noel Angel
name: Fontana, Nicolo
name: Götz, Tobias
name: Falk, Alexander
Publisher: name: Universität Regensburg
Year: 2021
Subjects: subject: HYDROGEN-BOND; LONDON DISPERSION; STEREOSELECTIVE-SYNTHESIS; SILICON(IV) COMPLEXES; CH/PI INTERACTION; VAN; ENERGY; ALKOXYSILANES; CONVERSION; STABILITY; Functionalization; Molecular model systems; Noncovalent interactions; Silanes; Structure elucidation
subject: 540 Chemie

description: We present the preparation of tert-butyldiphenylsilanes differing in one functional group. The molecular structures of the phenyl (3), methoxy (4), and amino derivatives (5) were elucidated by single-crystal X-ray diffraction analysis and their crystal packing investigated by Hirshfeld surface analysis along with 2D fingerprint plots. In the all-C derivative 3, the high symmetry dependence of the crystal packing enables a multitude of directional C(methyl)-H....C(pi) interactions between the tert-butyl and phenyl groups. The methoxy derivative 4 is characterized by considerably short H...H contacts possibly resulting from pre-orienting C(aryl)-H...O and C(aryl)-H...C(pi) hydrogen bonds. In the amino derivative 5, the nitrogen atom is not involved in intermolecular interactions, instead dispersive H...H contacts might become more important for the crystal cohesion. These findings once again underline the pronounced lone electron pair density transfer from the nitrogen atom towards the silicon atom.
Additional file 1: Figure S1. of Disruption of the carA gene in Pseudomonas syringae results in reduced fitness and alters motility
Creators: name: Butcher, Bronwyn
name: Chakravarthy, Suma
name: DâAmico, Katherine
name: Stoos, Kari
name: Filiatrault, Melanie
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Expression of carA in the P32 mutant. Figure S2 Growth of the complemented mutant of Î carA is comparable to wild type DC3000. (PDF 167 kb)
MOESM3 of The influenza A virus NS genome segment displays lineage-specific patterns in predicted RNA secondary structure
Creators: name: A. Vasin
name: A. Petrova
name: V. Egorov
name: M. Plotnikova
name: S. Klotchenko
name: M. Karpenko
name: O. Kiselev
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 3. Scheme of human and swine NS gene phylogenetic tree.
Ataenius scalptifrons Bates 1887
Creators: name: Minor, Pablo
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Aphodiidae
Ataenius
Ataenius scalptifrons

description: 180 Ataenius scalptifrons Bates, 1887
description: Published as part of Minor, Pablo, 2017, New state records and updated checklist of Aphodiini and Eupariini (Coleoptera: Scarabaeidae: Aphodiinae) from Mexico, pp. 493-514 in Zootaxa 4244 (4) on page 511, DOI: 10.11646/zootaxa.4244.4.3, http://zenodo.org/record/437241
Additional file 1: of Transcriptomic responses of a simplified soil microcosm to a plant pathogen and its biocontrol agent reveal a complex reaction to harsh habitat
Creators: name: Perazzolli, Michele
name: NoemĂ­ Herrero
name: Sterck, Lieven
name: Lenzi, Luisa
name: Pellegrini, Alberto
name: Puopolo, Gerardo
name: Peer, Yves Van De
name: Pertot, Ilaria
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Plant Biology

description: Concentration of the soil microorganism in the simplified soil microcosm. (DOCX 18 kb)
Lebertia (Lebertia) gimina Wang & Jin & Guo 2024, sp. nov.
Creators: name: Wang, Yu
name: Jin, Daochao
name: Guo, Jianjun
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Lebertiidae
Lebertia
Lebertia gimina

description: Lebertia (Lebertia) gimina sp. nov. (Fig. 2)
Material examined. Holotype: one female (slide number LN-LE-20190701) from Daheishan, Liaoning, P. R. China (120.505978 E, 42.019345 N), 524 m a.s.l., leg. Zhuhui Ding, 17-VII-2019. Paratype: one female (slide number LN-LE-20190703), same data as holotype.
Diagnosis. P-3 with paired dorsal and two dorsodistal setae (two dorsodistal close to each other). P-4 maximum H in the distal part, distal part not narrowed, ventral sectors 3: 2: 3. Medial suture Cx-I relatively short (Cx-I/II mL 0.87 (0.92)). Legs without swimming setae.
Description. Holotype (paratype in parentheses). Female. Integument smooth (Fig. 2B). Cx-I medially slightly shorter than Cx-II, Cx-I/II mL 0.87 (0.92) (Fig. 2A). Cx-II caudal W 36 (26). V2 and V4 almost at the same level, these and V1 not fused to Cx-IV, but V3 often very close to Cx-IV margin. Cx-IV slender, posteromedial angles distinctly pronounced, with convex posterior margin. Excretory pore unsclerotized. Chelicerae close to the palp total length (Fig. 2C). Gnathosoma slender (Fig. 2D). P-2 stouter (L/H 1.39 (1.62)), ventral seta long and near the ventrodistal margin, three dorsal setae in row, dorsodistal seta long, medial seta long and near the dorsodistal margin. The proximal and distal margin of P-3 is almost equal (Fig. 2E), one long dorsal seta and one rather long dorsal seta close to each other at the medial region, two dorsodistal setae rather long and close to each other, ventrodistal seta rather long and close to distal edge of segment. P-4 maximum H in the distal part, proximal part narrowed but distal part not narrowed, peg-like seta at the terminal, ventral sectors 3: 2: 3. See Table 1 for the total number of leg setae. See Table 2 for measurements.
Male. Unknown.
Etymology. “gimina ” represents paired dorsal setae on P-3.
Habitat. Pond.
Distribution. China (Liaoning).
Remarks. This new species is similar to Lebertia (Lebertia) sparsicapillata Thor, 1905 in P-3 with paired dorsal setae, two dorsodistal setae on P-3 close to each other, P-3 stouter (L/H <2.5), P-3 shorter than P-4 (ratio P-3/4 L <1.0), P-4 maximum H at the distal part, P-4 not narrowed distally, but it differs in the following characteristics (data from Gerecke 2009): 1) P-4 ventral sectors 3: 2: 3 (2: 1: 1, occasionally 1: 1: 1 in L. sparsicapillata); 2) legs without swimming setae (III-L-5 1–2, IV-L-5 2 in L. sparsicapillata).
description: Published as part of Wang, Yu, Jin, Daochao & Guo, Jianjun, 2024, Water mites of the genus Lebertia Neuman (Acari: Hydrachnidia: Lebertiidae) from China, with description of three new species, pp. 231-240 in Zootaxa 5399 (3) on pages 232-235, DOI: 10.11646/zootaxa.5399.3.2, http://zenodo.org/record/10516724
Additional file 5: of ClinQC: a tool for quality control and cleaning of Sanger and NGS data in clinical research
Creators: name: Pandey, Ram
name: Pabinger, Stephan
name: Kriegner, Albert
name: WeinhĂ¤Usel, Andreas
Publisher: name: Figshare
Year: 2016
Subjects: subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Marine Biology
subject: Inorganic Chemistry
subject: Science Policy

description: ClinQC user manual. An extensive guide for user to perform Sanger and NGS data analysis with ClinQC. (PDF 1025 kb)
Additional file 1: of Implications of methodological differences in measuring the rates of exclusive breastfeeding in Nepal: findings from literature review and cohort study
Creators: name: Vishnu Khanal
name: Lee, Andy
name: Scott, Jane
name: Karkee, Rajendra
name: Binns, Colin
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Computational Biology

description: Web Appendix: Questions asked collect breastfeeding information. (DOCX 23Â kb)