cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Lagrangian torus fibrations and homological mirror symmetry for the conifold
Creators: name: Chan, Kwokwai
name: Pomerleano, Daniel
name: Ueda, Kazushi
Publisher: name: arXiv
Year: 2013
Subjects: subject: Symplectic Geometry (math.SG)
subject: Algebraic Geometry (math.AG)
subject: FOS: Mathematics

description: We discuss homological mirror symmetry for the conifold from the point of view of the Strominger-Yau-Zaslow conjecture.
description: 46 pages, 22 figures, v4: corrected an error in the explicit formula for the uncompleted SYZ mirror $Y_0^{\vee}$ in the published version of this paper; we thank Luis Diogo for discussions which lead us to the discovery of this error
Frank Berger, Die Münzen der Römischen Republik im Kestner-Museum Hannover
Creators: name: Martin, Peter-Hugo
Publisher: name: Bonner Jahrbücher
Year: 2018

description: Rezension zu: Frank Berger, Die Münzen der Römischen Republik im Kestner-Museum Hannover. Sammlungskatalog, Band 7. Verlag Kestner-Museum, Hannover 1989. 539 Seiten, 2 Text-, 3952 Katalogabbildungen
description: Bonner Jahrbücher, Bd. 193.1993(1994):: Bonner Jahrbücher
Integration of audio-visual emotional information in schizophrneia
Creators: name: Lee, Bern
Publisher: name: University of Nevada, Las Vegas
Year: 2015

description: Schizophrenia (SZ) is a debilitating illness characterized by a number of perceptual and
cognitive deficits. Deficits in emotional judgment and perception are consistently identified, although less is known about the integration of emotional information from separate sensory modalities. This study investigates the integration of auditory and visual emotional information in schizophrenia and healthy controls through application of an emotion judgment task modeled after the McGurk effect. The emotional judgments of 54 participants (40 SZ and 14 control participants from the community) for auditory, visual, and bimodal phonemic stimuli conveying no lexical information were analyzed. Visual and auditory stimuli conveying joy or sadness were presented either alone, in congruent audiovisual form (e.g., joyous audio/joyous video), or as incongruent audiovisual (e.g., joyous video/sad audio) stimuli. It was hypothesized that for incongruent bimodal stimuli, controls would demonstrate a predictable shift into an emotional category that represented neither of the original emotional expressions, and that persons with schizophrenia would perform more poorly on this task, most notably for auditory productions of sadness. Results indicate that persons with schizophrenia are worse than controls at accurately judging auditory sadness, and that when presented with incongruent stimuli they judge the emotion presented by the visual signal more frequently than control participants. These results shed light on observed deficits in social and emotional judgments in schizophrenia, most notably those requiring integration of sensory information.
Jean-Pierre Callu und Xavier Loriot, L’or monnayé II. La dispersion des aurei en Gaule romaine sous l’empire
Creators: name: Schulzki, Heinz-Joachim
Publisher: name: Bonner Jahrbücher
Year: 2018

description: Rezension zu: Jean-Pierre Callu und Xavier Loriot, L’or monnayé II. La dispersion des aurei en Gaule romaine sous l’empire. Cahiers Ernest Babelon 3. ERA 27 du Centre de Recherches Archéologiques du C.N.R.S. Edition A.P.D.C.A., Juan-les-Pins 1990. 591 Seiten, 10 Karten, zahlreiche Schemata und Tabellen im Text
description: Bonner Jahrbücher, Bd. 193.1993(1994):: Bonner Jahrbücher
Additional file 1 of Relative abundance data can misrepresent heritability of the microbiome
Creators: name: Bruijning, Marjolein
name: Ayroles, Julien F.
name: Henry, Lucas P.
name: Koskella, Britt
name: Meyer, Kyle M.
name: Metcalf, C. Jessica E.
Publisher: name: figshare
Year: 2023
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Appendix S1. Approximating the heritability when based on relative abundances. Appendix S2. Numerical simulation results. Appendix S3. Power analysis. Appendix S4. Summary of published results. Appendix S5. Data transformations.
Additional file 8 of Adaptive learning and recall of motor-sensory sequences in adult echolocating bats
Creators: name: Taub, Mor
name: Yovel, Yossi
Publisher: name: figshare
Year: 2021
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Neuroscience
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: Additional file 8: Figure S7. Inter-group-interval (IGI) before and after the initiation of landing in the small flight chamber. There was no significant difference in IGI measured in the week before landing was initiated (prior to ‘first landing’) and the first week of landing (t-test, p >0.3). Examples are shown for two of the bats.
Additional file 5 of Tumor cell integrin β4 and tumor stroma E-/P-selectin cooperatively regulate tumor growth in vivo
Creators: name: Genduso, Sandra
name: Freytag, Vera
name: Schetler, Daniela
name: Kirchner, Lennart
name: Schiecke, Alina
name: Maar, Hanna
name: Wicklein, Daniel
name: Gebauer, Florian
name: Bröker, Katharina
name: Stürken, Christine
name: Milde-Langosch, Karin
name: Oliveira-Ferrer, Leticia
name: Ricklefs, Franz L.
name: Ewald, Florian
name: Wolters-Eisfeld, Gerrit
name: Riecken, Kristoffer
name: Unrau, Ludmilla
name: Krause, Linda
name: Bohnenberger, Hanibal
name: Offermann, Anne
name: Perner, Sven
name: Sebens, Susanne
name: Lamszus, Katrin
name: Diehl, Linda
name: Linder, Stefan
name: Jücker, Manfred
name: Schumacher, Udo
name: Lange, Tobias
Publisher: name: figshare
Year: 2023
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer

description: Additional file 5. Suppl. Fig. S5: Attraction of human macrophages by ITGB4 knockdown tumor cell-conditioned media. Entire dataset of data shown in Fig. 7A including further donors.
$\bar{\mathrm{D}}$ and $\mathrm{B}$ mesons in nuclear medium
Creators: name: Yasui, S.
name: Sudoh, K.
Publisher: name: arXiv
Year: 2012
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We discuss the mass modifications of $\bar{\mathrm{D}}$ and $\bar{\mathrm{D}}^{\ast}$ ($\mathrm{B}$ and $\mathrm{B}^{\ast}$) mesons in nuclear medium. The heavy quark symmetry for $\bar{\mathrm{D}}$ and $\bar{\mathrm{D}}^{\ast}$ ($\mathrm{B}$ and $\mathrm{B}^{\ast}$) mesons is adopted, and the interaction between a $\bar{\mathrm{D}}$ or $\bar{\mathrm{D}}^{\ast}$ ($\mathrm{B}$ or $\mathrm{B}^{\ast}$) meson and a nucleon is supplied from the pion exchange. We find the negative mass shifts for $\bar{\mathrm{D}}$ meson and $\mathrm{B}$ meson, and hence that the $\bar{\mathrm{D}}$ and $\mathrm{B}$ mesons are bound in the nuclear medium. As applications, we consider the atomic nuclei with a $\bar{\mathrm{D}}$ meson, $^{40}_{\bar{\mathrm{D}}}\mathrm{Ca}$ and $^{208}_{\bar{\mathrm{D}}}\mathrm{Pb}$, and investigate the energy levels of the $\bar{\mathrm{D}}$ meson in each nucleus. We also discuss the mass shifts in the isospin asymmetric nuclear medium, and present the possible phenomenon about distribution of isospin density around a $\bar{\mathrm{D}}$ or $\mathrm{B}$ meson in nuclear medium. We find that the mass shifts of $\bar{\mathrm{D}}^{\ast}$ and $\mathrm{B}^{\ast}$ mesons have large imaginary parts, which would prevent precise study of the energy levels of $\bar{\mathrm{D}}^{\ast}$ and $\mathrm{B}^{\ast}$ mesons in nuclei.
description: 21 pages, 9 figures
Biogeochemistry of a Saline, Alkaline, Terminal Lake Ecosystem in Transition; Walker Lake, Nevada
Creators: name: Willever, Katherine Lynn
Publisher: name: University of Nevada, Las Vegas
Year: 2016

description: Walker Lake is a saline, alkaline, terminal lake ecosystem located in west-central Nevada. For over one hundred years, anthropogenic streamflow diversions within the Walker River Basin have ultimately led to little or no water reaching Walker Lake, the basin's terminus for water flow. These diversions have resulted in a >46 meter decrease in the lake surface altitude and increases in salinity and dissolved salt constituents that have caused the elimination of native fish species. This study examines how the lack of freshwater inflow has altered the physical, chemical, and microbiological structure of Walker Lake during the lake's ongoing desiccation.
Between 2007 and 2015, water and sediment samples were collected from a central lake location of Walker Lake, coinciding with the historical timing of late summer thermal stratification. Physical parameters and chemical constituent measurements show Walker Lake to have shifted from a monomictic to a polymictic system sometime after 2008, with salinity increasing conservatively to values over 21 g L-1 in 2015. Illumina sequencing of the V4 region of the 16S rRNA gene was completed on all environmental filter and sediment samples to observe trends and changes in the microbial populations of the water column and sediment as a result of the changing lake dynamics. Over time, distinct differences in overall community composition and diversity were observed between sampling dates. The sediment communities were found to be highly dissimilar from the overlying pelagic microbial communities and showed more similarity to microbial communities from anoxic hypolimnion water samples from the 2008 sampling event when lake stratification was observed.
The anthropogenic and climatic factors that Walker Lake has faced over the past century have dramatically altered the ecosystem. This study aims to contribute to the overall understanding of the Walker River Basin and to other terminal lake basins throughout the world. By examining the microbial communities of Walker Lake and documenting the limnological shift of this transitioning ecosystem, we gain insights into the physiological aspects of Walker Lake and possible ways to manage and restore this unique environment to the thriving ecosystem it once was.
Additional file 1 of Large variations in the practice patterns of surgical antiseptic preparation solutions in patients with open and closed extremity fractures: a cross-sectional survey
Creators: name: Jurado-Ruiz, Maria
name: Slobogean, Gerard P.
name: Bzovsky, Sofia
name: Garibaldi, Alisha
name: O’Hara, Nathan N.
name: Howe, Andrea
name: Petrisor, Brad
name: Sprague, Sheila
Publisher: name: figshare
Year: 2023
Subjects: subject: Biophysics
subject: Space Science
subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology
subject: 110309 Infectious Diseases

description: Survey questions on practice patterns of surgical antiseptic preparation solutions in patients with open and closed extremity fractures. (DOCX 118 kb)
Weight Gain in Pregnancy and Pre-menopausal Breast Cancer: a population-based case-control study
Creators: name: Ardalan, Arash
Publisher: name: University of Nevada, Las Vegas
Year: 2013

description: Background: The risk of breast cancer increases transiently after pregnancy and then falls to a lower level than for age-matched nulliparous women. Higher levels of estrogen are known as the primary reason. Several pregnancy characteristics are thought to be confounding the above link; however, except for the age at first pregnancy no other pregnancy-related factor has been proved to be significant. Specifically, it has not been established that an excessive weight gain in pregnancy is linked to the maternal risk of breast cancer.
Objectives: To identify independent influence of weight gain in pregnancy on the risk of pre-menopausal breast cancer following a delivery. We also examine the effect of demographic factors and other relevant pregnancy characteristics on the risk of breast cancer.
Methods: Our cohort consisted of 213,250 women who gave birth to a live neonate from January 1, 1994 to December 31, 2003. We performed a nested population-based case-control study on 126 Nevada patients with a first lifetime breast cancer diagnosed from January 1, 1995 through December 31, 2003, and 504 Nevada participants without breast cancer. The two groups were matched on age at the recorded delivery. Our dataset was a linkage between the Nevada Cancer Registry database for the years 1995-2008 and birth certificates from the Nevada State Health Division for the years of 1994-2008.
Results: The excessive weight gain in none of the categories was associated with increased risk of premenopausal breast cancer. After adjustment for other pregnancy characteristics the results remained unchanged. Women whose pregnancies progressed beyond 40 weeks of gestation were at significantly lower risk of developing breast cancer up to five years following delivery, compared to the women who delivered at 37-40 weeks of gestation (OR 0.33, 95% CI 0.11-0.93), after adjustment for confounding variables.
Conclusions: Our study did not show an association between excessive weight gain in pregnancy and the risk of pre-menopausal breast cancer. However, pregnancies that extended beyond 40 weeks of gestation were strongly associated with a lower likelihood of pre-menopausal breast cancer up to 5 years after delivery. Biological plausibility for this may relate to the fact that as pregnancy develops into more advanced stages, mammary cells have more time to complete differentiation and maturation; a process that started earlier in the third trimester. The results of this study will therefore contribute to the literature and may provide a basis for future studies.
Impact of dispersal on the stability of metapopulations
Creators: name: Tromeur, Eric
name: Rudolf, Lars
name: Gross, Thilo
Publisher: name: arXiv
Year: 2013
Subjects: subject: Populations and Evolution (q-bio.PE)
subject: FOS: Biological sciences

description: Dispersal is a key ecological process, that enables local populations to form spatially extended systems called metapopulations. In the present study, we investigate how dispersal affects the linear stability of a general single-species metapopulation model. We discuss both the influence of local within-patch dynamics and the effects of various dispersal behaviors on stability. We find that positive density-dependent dispersal and positive density-dependent settlement are destabilizing dispersal behaviors while negative density-dependent dispersal and negative density-dependent settlement are stabilizing. It is also shown that dispersal has a stabilizing impact on heterogeneous metapopulations that correlates positively with the number of patches and the connectance of metapopulation networks.
Analysis of parametric biological models with non-linear dynamics
Creators: name: Testylier, Romain
name: Dang, Thao
Publisher: name: arXiv
Year: 2012
Subjects: subject: Computational Engineering, Finance, and Science (cs.CE)
subject: FOS: Computer and information sciences

description: In this paper we present recent results on parametric analysis of biological models. The underlying method is based on the algorithms for computing trajectory sets of hybrid systems with polynomial dynamics. The method is then applied to two case studies of biological systems: one is a cardiac cell model for studying the conditions for cardiac abnormalities, and the second is a model of insect nest-site choice.
description: In Proceedings HSB 2012, arXiv:1208.3151
Coherence and Raman sideband cooling of a single atom in an optical tweezer
Creators: name: Thompson, J. D.
name: Tiecke, T. G.
name: Zibrov, A. S.
name: Vuletić, V.
name: Lukin, M. D.
Publisher: name: arXiv
Year: 2012
Subjects: subject: Atomic Physics (physics.atom-ph)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We investigate quantum control of a single atom in an optical tweezer trap created by a tightly focused optical beam. We show that longitudinal polarization components in the dipole trap arising from the breakdown of the paraxial approximation give rise to significant internal-state decoherence. We show that this effect can be mitigated by appropriate choice of magnetic bias field, enabling Raman sideband cooling of a single atom close to its three-dimensional ground state in an optical trap with a beam waist as small as $w=900$ nm. We achieve vibrational occupation numbers of $\bar{n}_r = 0.01$ and $\bar{n}_a = 8$ in the radial and axial directions of the trap, corresponding to an rms size of the atomic wavepacket of 24 nm and 270 nm, respectively. This represents a promising starting point for future hybrid quantum systems where atoms are placed in close proximity to surfaces.
description: 5 pages, 4 figures
Additional file 9 of Adaptive learning and recall of motor-sensory sequences in adult echolocating bats
Creators: name: Taub, Mor
name: Yovel, Yossi
Publisher: name: figshare
Year: 2021
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Neuroscience
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: Additional file 9: Table S2. Number of analyzed landings out of the total examined, in the small cluttered chamber. Data is given for the first clutter encounter - the initial two months in this chamber (stage 2). The total number of landings accounts for landings that took place on analyzed days only (30 days for each bat). Within those days some landings could not be analyzed due to technical difficulties such as invalid audio files.
Additional file 1 of Effectiveness of community case management of malaria on severe malaria and inpatient malaria deaths in Zambia: a dose–response study using routine health information system data
Creators: name: Ashton, Ruth A.
name: Hamainza, Busiku
name: Lungu, Chris
name: Rutagwera, Marie-Reine I.
name: Porter, Travis
name: Bennett, Adam
name: Hainsworth, Michael
name: Burnett, Sarah
name: Silumbe, Kafula
name: Slater, Hannah
name: Eisele, Thomas P.
name: Miller, John M.
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Figure S1. Stacked area plot of number of health facilities and community health workers operating by month and province (left) and line plot of total inpatient admissions with confirmed malaria among all ages by month and province (right). Note that y-axes are variable between Provinces.
How Accurately Can the Inclination Angle, Position Angle, and Location of the Dynamic Center be Measured from the Neutral Hydrogen Disk in the Central Regions of Dwarf Galaxies?
Creators: name: Boisvert, John Henry
Publisher: name: University of Nevada, Las Vegas
Year: 2013

description: Rotation curves measured using Hi emission are a powerful tool for probing the mass distribution of galaxies. We investigate the accuracy with which rotation curves can be determined using the tilted-ring model. We have examined the effect of varying the dynamic center on measured rotation velocities within the inner regions of galaxies where the disagreement between theory and observation is the greatest. We examine a sample of dwarf galaxies (and one spiral galaxy) from the THINGS high-resolution survey (Walter et al. 2008). We find that the measured rotation curve is quite sensitive to the location of the dynamic center. This center is difficult to determine for dwarf galaxies. We also find that errors in rotation velocities determined with the tilted-ring method have been underestimated in previous studies.
Additional file 1: of Large variations in the practice patterns of surgical antiseptic preparation solutions in patients with open and closed extremity fractures: a cross-sectional survey
Creators: name: Jurado-Ruiz, Maria
name: Slobogean, Gerard
name: Bzovsky, Sofia
name: Garibaldi, Alisha
name: OâHara, Nathan
name: Howe, Andrea
name: Petrisor, Brad
name: Sprague, Sheila
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: Molecular Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Survey questions on practice patterns of surgical antiseptic preparation solutions in patients with open and closed extremity fractures. (DOCX 118â kb)
A subsystems approach for parameter estimation of ODE models of hybrid systems
Creators: name: Georgoulas, Anastasis
name: Clark, Allan
name: Ocone, Andrea
name: Gilmore, Stephen
name: Sanguinetti, Guido
Publisher: name: arXiv
Year: 2012
Subjects: subject: Computational Engineering, Finance, and Science (cs.CE)
subject: Quantitative Methods (q-bio.QM)
subject: FOS: Computer and information sciences
subject: FOS: Biological sciences

description: We present a new method for parameter identification of ODE system descriptions based on data measurements. Our method works by splitting the system into a number of subsystems and working on each of them separately, thereby being easily parallelisable, and can also deal with noise in the observations.
description: In Proceedings HSB 2012, arXiv:1208.3151
On the fractional Poisson process and the discretized stable subordinator
Creators: name: Gorenflo, Rudolf
name: Mainardi, Francesco
Publisher: name: arXiv
Year: 2013
Subjects: subject: Probability (math.PR)
subject: Mathematical Physics (math-ph)
subject: FOS: Mathematics
subject: FOS: Physical sciences
subject: 26A33, 33E12, 45K05, 60G18, 60G50, 60G52, 60K05, 76R50

description: The fractional Poisson process and the Wright process (as discretization of the stable subordinator) along with their diffusion limits play eminent roles in theory and simulation of fractional diffusion processes. Here we have analyzed these two processes, concretely the corresponding counting number and Erlang processes, the latter being the processes inverse to the former. Furthermore we have obtained the diffusion limits of all these processes by well-scaled refinement of waiting times and jumps
description: 30 pages, 4 figures. A preliminary version of this paper was an invited talk given by R. Gorenflo at the Conference ICMS2011, held at the International Centre of Mathematical Sciences, Pala-Kerala (India) 3-5 January 2011, devoted to Prof Mathai on the occasion of his 75 birthday
Additional file 2 of New tuberculosis vaccines in India: modelling the potential health and economic impacts of adolescent/adult vaccination with M72/AS01E and BCG-revaccination
Creators: name: Clark, Rebecca A.
name: Weerasuriya, Chathika K.
name: Portnoy, Allison
name: Mukandavire, Christinah
name: Quaife, Matthew
name: Bakker, Roel
name: Scarponi, Danny
name: Harris, Rebecca C.
name: Rade, Kirankumar
name: Mattoo, Sanjay Kumar
name: Tumu, Dheeraj
name: Menzies, Nicolas A.
name: White, Richard G.
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 2. The CHEERS checklist for the study.
MOESM1 of The NAD kinase OsNADK1 affects the intracellular redox balance and enhances the tolerance of rice to drought
Creators: name: Wang, Xiang
name: Li, Bin-Bin
name: Ma, Tian-Tian
name: Sun, Liang-Yu
name: Tai, Li
name: Hu, Chun-Hong
name: Liu, Wen-Ting
name: Li, Wen-Qiang
name: Chen, Kun-Ming
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Virology
subject: Computational Biology

description: Additional file 1 : Figure S1. The promoter sequence of OsNADK1 and its cis-element analysis. The cis-elements were scanned and identified by the PlantCARE programme (http://bioinformatics.psb.ugent.be/webtools/plantcare/html/) with the 2000-bp upstream nucleotide sequence of the OsNADK1 CDS (coding sequence).
Additional file 1 of Orthobiologics and hyaluronic acid usage in the Netherlands: an electronic survey of 265 orthopaedic surgeons and sports physicians
Creators: name: de Graeff, J. J.
name: van den Bekerom, M. P. J.
name: van Meer, B. L.
name: Zijl, J. A. C.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Science Policy

description: Additional file 1 : Supplementary Table 1 – questions survey.
A Model of the Cellular Iron Homeostasis Network Using Semi-Formal Methods for Parameter Space Exploration
Creators: name: Mobilia, Nicolas
name: Donzé, Alexandre
name: Moulis, Jean Marc
name: Fanchon, Éric
Publisher: name: arXiv
Year: 2012
Subjects: subject: Computational Engineering, Finance, and Science (cs.CE)
subject: Molecular Networks (q-bio.MN)
subject: Quantitative Methods (q-bio.QM)
subject: FOS: Computer and information sciences
subject: FOS: Biological sciences

description: This paper presents a novel framework for the modeling of biological networks. It makes use of recent tools analyzing the robust satisfaction of properties of (hybrid) dynamical systems. The main challenge of this approach as applied to biological systems is to get access to the relevant parameter sets despite gaps in the available knowledge. An initial estimate of useful parameters was sought by formalizing the known behavior of the biological network in the STL logic using the tool Breach. Then, once a set of parameter values consistent with known biological properties was found, we tried to locally expand it into the largest possible valid region. We applied this methodology in an effort to model and better understand the complex network regulating iron homeostasis in mammalian cells. This system plays an important role in many biological functions, including erythropoiesis, resistance against infections, and proliferation of cancer cells.
description: In Proceedings HSB 2012, arXiv:1208.3151
Laminations from the Main Cubioid
Creators: name: Blokh, Alexander
name: Oversteegen, Lex
name: Ptacek, Ross
name: Timorin, Vladlen
Publisher: name: arXiv
Year: 2013
Subjects: subject: Dynamical Systems (math.DS)
subject: FOS: Mathematics
subject: 37F20 (Primary), 37C25, 37F10, 37F50 (Secondary)

description: According to a recent paper \cite{bopt13}, polynomials from the closure $\bar{\rm PHD}_3$ of the {\em Principal Hyperbolic Domain} ${\rm PHD}_3$ of the cubic connectedness locus have a few specific properties. The family $\mathrm{CU}$ of all polynomials with these properties is called the \emph{Main Cubioid}. In this paper we describe the set $\mathrm{CU}^c$ of laminations which can be associated to polynomials from $\mathrm{CU}$.
description: 38 pages, 5 figures (in the new version a few typos have been corrected and a few proofs have been expanded). To appear in Discrete and Continuous Dynamical Systems. arXiv admin note: text overlap with arXiv:1106.5022
Additional file 1 of Family planning for urban slums in low- and middle-income countries: a scoping review of interventions/service delivery models and their impact
Creators: name: Ganle, John Kuumuori
name: Baatiema, Leonard
name: Ayamah, Paul
name: Ofori, Charlotte Abra Esime
name: Ameyaw, Edward Kwabena
name: Seidu, Abdul-Aziz
name: Ankomah, Augustine
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy

description: Additional file 1. MEDLINE Search Strategy.
2PN Light Propagation in the Scalar-Tensor Theory: an $N$-Point-Masses Case
Creators: name: Deng, Xue-Mei
name: Xie, Yi
Publisher: name: arXiv
Year: 2012
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Within the framework of the scalar-tensor theory (STT), its second post-Newtonian (2PN) approximation is obtained with Chandrasekhar's approach. By focusing on an $N$-point-masses system as the first step, we reduce the metric to its 2PN form for light propagation. Unlike previous works, at 2PN order, we abandon the hierarchized hypothesis and do not assume two parametrized post-Newtonian (PPN) parameters $γ$ and $β$ to be unity. We find that although there exist $γ$ and $β$ in the 2PN metric, only $γ$ appears in the 2PN equations of light. As a simple example for applications, a gauge-invariant angle between the directions of two incoming photons for a differential measurement is investigated after the light trajectory is solved in a static and spherically symmetric spacetime. It shows the deviation from the general relativity (GR) $δθ_{\mathrm{STT}}$ does \emph{not} depend on $β$ even at 2PN level in this circumstance, which is consistent with previous results. A more complicated application is light deflection in a 2-point-masses system. We consider a case that the light propagation time is much less than the time scale of its orbital motion and thus treat it as a static system. The 2-body effect at 2PN level originating from relaxing the hierarchized hypothesis is calculated. Our analysis shows the 2PN 2-body effect in the Solar System is one order of magnitude less than future $\sim 1$ nas experiments, while this effect could be comparable with 1PN component of $δθ_{\mathrm{STT}}$ in a binary system with two Sun-like stars and separation by $\sim 0.1$ AU if an experiment would be able to measure $γ-1$ down to $\sim 10^{-6}$.
description: 34 pages, no figure; Accepted by Physical Review D
title: Designing a Curriculum on Sustainable Living Practices
Creators: name: Neale, Stefanie
Publisher: name: Western Washington University
Year: 2017

description:
This report summarizes the design, implementation, and evaluation of a Sustainable Living Practices course that was offered at Western Washington University (WWU) during Fall 2016. The purpose of this course was to teach students about sustainable living practices, their benefits, and the local resources available that support these practices. Engagement in sustainable living practices minimizes the environmental harm and greenhouse gas emissions produced by a typical consumerism lifestyle. Individuals that believe sustainable living practices are important may not necessarily engage in these behaviors in their own life. This gap between individuals’ beliefs and actions is referred to as the Conservation AttitudeBehavior Gap (Leiserowitz et al. 2010). This course was designed to address the Conservation Attitude-Behavior Gap by giving students the opportunity to learn about and engage in sustainable living practices through lectures, assignments, guest speakers, and discussions with their peers. The course was evaluated using the Context, Input, Process, and Product (CIPP) Model, with a focus on how to improve the course both during its implementation and after its completion. The deliverables for this project include the course that was taught in Fall 2016, this final report, and a teaching guide that was created for individuals interested in teaching a course on sustainable living. The findings from the evaluation of the course were incorporated into the teaching guide to improve the course’s content.
Additional file 1 of Prevalence and antibiotic resistance of bacteria isolated from the cerebrospinal fluid of neurosurgical patients at Peking Union Medical College Hospital
Creators: name: Chang, Jian-bo
name: Wu, Hao
name: Wang, He
name: Ma, Bai-tao
name: Wang, Ren-zhi
name: Wei, Jun-ji
Publisher: name: figshare
Year: 2023
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Case report form. The character of Postoperative Central Nervous System Infections (PCNSIS). (DOCX 23 kb)
Fermionic vacuum polarization by a flat boundary in cosmic string spacetime
Creators: name: de Mello, E. R. Bezerra
name: Saharian, A. A.
name: Abajyan, S. V.
Publisher: name: arXiv
Year: 2012
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: In this paper we investigate the fermionic condensate and the renormalized vacuum expectation value (VEV) of the energy-momentum tensor for a massive fermionic field induced by a flat boundary in the cosmic string spacetime. In this analysis we assume that the field operator obeys MIT bag boundary condition on the boundary. We explicitly decompose the VEVs into the boundary-free and boundary-induced parts. General formulas are provided for both parts which are valid for any value of the parameter associated with the cosmic string. For a massless field, the boundary-free part in the fermionic condensate and the boundary-induced part in the energy-momentum tensor vanish. For a massive field the radial stress is equal to the energy density for both boundary-free and boundary-induced parts. The boundary-induced part in the stress along the axis of the cosmic string vanishes. The total energy density is negative everywhere, whereas the effective pressure along the azimuthal direction is positive near the boundary and negative near the cosmic string. We show that for points away from the boundary, the boundary-induced parts in the fermionic condensate and in the VEV of the energy-momentum tensor vanish on the string.
description: 22 pages, 3 figures
Additional file 1 of The relationship of insulin resistance and diabetes to tau PET SUVR in middle-aged to older adults
Creators: name: Ennis, Gilda E.
name: Betthauser, Tobey J.
name: Koscik, Rebecca Langhough
name: Chin, Nathaniel A.
name: Christian, Bradley T.
name: Asthana, Sanjay
name: Johnson, Sterling C.
name: Bendlin, Barbara B.
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Cell Biology
subject: Neuroscience
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1: Supplementary Table 1. Antidiabetic medication usage in the Diabetic Status sample. Data presented are counts (%). Supplementary Table 2. Results from linear regression testing (a) the relationship of IR and diabetic status to entorhinal cortex tau PET SUVR1 and (b) amyloid PET DVR as a moderator of the relationship of HOMA2-IR and diabetic status to entorhinal cortex tau PET SUVR. Supplementary Table 3. Results from robust regression testing amyloid PET positivity status as a moderator of the relationship of diabetic status and HOMA2-IR to tau PET SUVR in the a) entorhinal cortex1 and b) medial temporal lobe2.
Additional file 1 of Integrated epigenome, whole genome sequence and metabolome analyses identify novel multi-omics pathways in type 2 diabetes: a Middle Eastern study
Creators: name: Yousri, Noha A.
name: Albagha, Omar M. E.
name: Hunt, Steven C.
Publisher: name: figshare
Year: 2023
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1. Methods.
DISTAL informa Ottobre 2022
Creators: name: Braschi, Ilaria
Publisher: name: Alma Mater Studiorum - Università di Bologna
Year: 2022
Subjects: AGR/01 Economia ed estimo rurale
AGR/02 Agronomia e coltivazioni erbacee
AGR/03 Arboricoltura generale e coltivazioni arboree
AGR/04 Orticoltura e floricoltura
AGR/05 Assestamento forestale e selvicoltura
AGR/07 Genetica agraria
AGR/08 Idraulica agraria e sistemazioni idraulico-forestali
AGR/09 Meccanica agraria
AGR/10 Costruzioni rurali e territorio agroforestale
AGR/11 Entomologia generale e applicata
AGR/12 Patologia vegetale
AGR/13 Chimica agraria
AGR/14 Pedologia
AGR/15 Scienze e tecnologie alimentari
AGR/16 Microbiologia agraria
AGR/17 Zootecnica generale e miglioramento genetico
AGR/18 Nutrizione e alimentazione animale
AGR/19 Zootecnica speciale
AGR/20 Zoocolture
BIO/01 Botanica generale
BIO/10 Biochimica
CHIM/03 Chimica generale e inorganica
CHIM/06 Chimica organica
IUS/03 Diritto agrario
VET/04 Ispezione degli alimenti di origine animale

description: Bollettino di informazione che raccoglie eventi, notizie, articoli e attività del DISTAL. A cura dell'Area Comunicazione DISTAL
Additional file 1 of Diagnosis of early stage knee osteoarthritis based on early clinical course: data from the CHECK cohort
Creators: name: Wang, Qiuke
name: Runhaar, Jos
name: Kloppenburg, Margreet
name: Boers, Maarten
name: Bijlsma, Johannes W. J.
name: Bierma-Zeinstra, Sita M. A.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy
subject: Hematology
subject: Computational Biology

description: Additional file 1.
Half exact functors associated with cotorsion pairs on exact categories
Creators: name: Liu, Yu
Publisher: name: arXiv
Year: 2013
Subjects: subject: Representation Theory (math.RT)
subject: FOS: Mathematics

description: In the previous article "Hearts of twin cotorsion pairs on exact categories", we introduced the notion of the heart for any cotorsion pair on an exact category with enough projectives and injectives, and showed that it is an abelian category. In this paper, we construct a half exact functor from the exact category to the heart. This is analog of the construction of Abe and Nakaoka for triangulated categories. We will also use this half exact functor to find out a sufficient condition when two different hearts are equivalent.
description: 26 pages
Additional file 1 of Effectiveness of personalized treatment stage-adjusted digital therapeutics in colorectal cancer: a randomized controlled trial
Creators: name: Kim, Inah
name: Lim, Ji Young
name: Kim, Sun Woo
name: Shin, Dong Wook
name: Kim, Hee Cheol
name: Park, Yoon Ah
name: Lee, Yoon Suk
name: Kwak, Jung-Myun
name: Kang, Seok Ho
name: Lee, Ji Youl
name: Hwang, Ji Hye
Publisher: name: figshare
Year: 2023
Subjects: subject: Space Science
subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional files 1. SPIRIT Checklist.
title: A Computational Investigation of BODIPY Excited State Properties and Photosensitization of Molecular Oxygen
Creators: name: Komoto, Keenan
Publisher: name: Western Washington University
Year: 2017

description:
Cancer has long been a significant problem that has affected our world’s population for years and continues to this day. With the number of cases expected to increase annually there is a societal pressure to find effective treatment methods for eliminating cancer. Current forms of cancer treatment tend to cause detrimental effects to the human body and are usually quite expensive and long lasting, some costing upwards of $30,000 over an 8 week period. A more recently established form of cancer treatment known as photodynamic therapy is an effective treatment option for ridding cancers that lie on or just below the surface of the skin. Photodynamic therapy is usually done as an outpatient procedure, on average costing between $2,500-3,000 and can eliminate all traces of cancer in as little as a single visit. A major drawback to this form of cancer treatment is the lack of efficient photosensitizers, the light absorbing organic compounds which initiate the destruction of cancer cells. Our research is based on establishing a computational strategy for predicting the effectiveness of new photodynamic therapy photosensitizers. We focus our study on a set of photosensitizers known as boron-dipyrromethene (BODIPY) dyes. These dyes are fluoresecent compounds used throughout a variety of photochemical applications such as photovoltaics, biological imaging, and more recently photodynamic therapy. We apply computational chemistry methods to calculate electronic properties we can use to rate the performance of these photosensitizers. First, we begin with a fundamental understanding of what photodynamic therapy is and the components that make up the treatment method. Then we move to descriptions of the computational methods we implement, including density functional theory (DFT), time- dependent density functional theory (TDDFT), restricted open-shell Kohn-Sham method (ROKS), and constrained density functional theory (CDFT). Next we investigate the parallelity between the S1 excited state potential energy surfaces predicted by TDDFT and ROKS. Finally, we investigate the singlet oxygen photosensitization characteristics of a particular BODIPY derivative. This study will help future scientists approach the issue of finding the top candidate photosensitizers for use in photodynamic therapy through a rational design process rather than a repetitive trial and error based approach.
Additional file 1 of Regional differences in cervical cancer incidence and associated risk behaviors among Norwegian women: a population-based study
Creators: name: Hansen, Bo T.
name: Campbell, Suzanne
name: Nygård, Mari
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1.
Additional file 1 of Mixed methods evaluation of the impact of a short term training program on sterile processing knowledge, practice, and attitude in three hospitals in Benin
Creators: name: Fast, Olive
name: Fast, Christina
name: Fast, Dan
name: Veltjens, Suzanne
name: Salami, Zouliha
name: White, Michelle
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Science Policy

description: Infection Prevention Test. (DOCX 68 kb)
Additional file 3 of Integrated epigenome, whole genome sequence and metabolome analyses identify novel multi-omics pathways in type 2 diabetes: a Middle Eastern study
Creators: name: Yousri, Noha A.
name: Albagha, Omar M. E.
name: Hunt, Steven C.
Publisher: name: figshare
Year: 2023
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3: Figure S1. Full omics network of CpG-metabolites and associated SNP-CpGs and associated metabolite-metabolite pairs.
Additional file 1 of The effect of tidal forcing on biogeochemical processes in intertidal salt marsh sediments
Creators: name: Taillefert, Martial
name: Neuhuber, Stephanie
name: Bristow, Gwendolyn
Publisher: name: figshare
Year: 2023
Subjects: subject: Geology
subject: FOS: Earth and related environmental sciences
subject: Geochemistry

description: Authors’ original file for figure 1
Hybrid Automata and ε-Analysis on a Neural Oscillator
Creators: name: Casagrande, Alberto
name: Dreossi, Tommaso
name: Piazza, Carla
Publisher: name: arXiv
Year: 2012
Subjects: subject: Computational Engineering, Finance, and Science (cs.CE)
subject: Logic in Computer Science (cs.LO)
subject: Symbolic Computation (cs.SC)
subject: FOS: Computer and information sciences

description: In this paper we propose a hybrid model of a neural oscillator, obtained by partially discretizing a well-known continuous model. Our construction points out that in this case the standard techniques, based on replacing sigmoids with step functions, is not satisfactory. Then, we study the hybrid model through both symbolic methods and approximation techniques. This last analysis, in particular, allows us to show the differences between the considered approximation approaches. Finally, we focus on approximations via epsilon-semantics, proving how these can be computed in practice.
description: In Proceedings HSB 2012, arXiv:1208.3151
Additional file 1 of Maternal patterns of inheritance alter transcript expression in eggs
Creators: name: Harry, Nathan D.
name: Zakas, Christina
Publisher: name: figshare
Year: 2023
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Supplement Table 1. Sequencing and read processing results for all libraries. Supplement Table 2. Genes exclusive to one group: mean counts and annotations. Supplement Table 3. Criteria for mode of inheritance assignments. Supplement Table 4. Annotation of differentially expressed genes with parental effects. Supplement Table 5. Criteria for regulatory mode assignments. Supplement Table 6. Selected Housekeeping genes (for RUVg). Supplement Figure 1. REVIGO tree-map of GO terms associated with differentially expressed genes between PP and LL eggs. Supplement Figure 2. Differences in F1 egg expression for genes exclusive to LL or PP eggs. Supplement Figure 3. Shared gene expression across all groups.