cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Methane storage and transport via structure H clathrate hydrate
Creators: name: Susilo, Robin
Publisher: name: University of British Columbia
Year: 2008

description: This thesis examines the prospect of structure H (sH) hydrate to be exploited for methane storage. The methane content in the hydrate, hydrate kinetics and conversion rates are areas of particular importance. Experiments and theory are employed at the macroscopic and molecular levels to study the relevant phenomena. sH hydrate was successfully synthesized from ice particles with full conversion achieved within a day when thermal ramping above the ice melting point was applied. It was found that a polar guest (tert-butyl methyl ether / TBME) wets ice more extensively compared to two hydrophobic guests (neo-hexane / NH and methyl-cyclohexane / MCH). TBME also has much higher solubility in water. Consequently, the system with TBME was found to exhibit the highest initial hydrate formation rate from ice particles or in water in a well stirred vessel. However, the rate with the hydrophobic guests was the fastest when the temperature exceeded the ice point. Thus, the applied temperature ramping compensated the slow kinetics below the ice point for the hydrophobic guests and allowed faster overall conversion than the polar guest. Structure, cage occupancy, composition and methane content in the hydrate were also determined by employing different techniques and the results were found to be consistent. It was found that the methane content in structure H hydrate with TBME was the smallest (103-125 v/v) whereas that with NH was 130-139 (v/v) and that with MCH was 132-142 (v/v). The methane content in structure II hydrate by using propane (C₃H₈) and tetrahydrofuran (THF) as the large guest molecule were also estimated. Optimal methane content was found at approximately 100 (v/v) for both C₃H₈ and THF systems with the large guest concentrations at 1% for C₃H₈ (10°C) and 1% for THF (room temperature). The gas content is of course lower than that for structure I hydrate (170 v/v) but one should consider the fact that the hydrate formation conditions are much lower (less than 1 MPa). Finally, MD simulations revealed for the first time the formation of defects in the cavities for the TBME/methane/water (sH hydrate) system which may affect hydrate stability and kinetics.
Plectranthias megalophthalmus Fourmanoir & Randall 1979
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias megalophthalmus

description: Plectranthias megalophthalmus Fourmanoir & Randall, 1979
Holotype: BPBM 22486, 61.0 mm SL, female.
Type locality: south of Isle of Pines, New Caledonia, depth 360 meters. Illustrations: Fourmanoir & Randall, 1979:316, fig. 1; Randall, 1980:157, fig. 20.
D: X, 15. A: III, 7. P: 15. C: 17. V: 26. GR: 17 (5 + 12). LL: 31. CP: 12.
Distribution: western South Pacific: off New Caledonia.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 31, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283
Additional file 1: of Analysis of resources assisting in coping with swallowing difficulties for patients with Parkinsonâ  s disease: a cross-sectional study
Creators: name: Matsushima, Aiko
name: Matsushima, Junichi
name: Matsumoto, Akihisa
name: Moriwaka, Fumio
name: Honma, Sanae
name: Itoh, Kazunori
name: Yamada, Keiko
name: Shimohama, Shun
name: Ohnishi, Hirofumi
name: Mori, Mitsuru
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Cell Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy

description: APPENDIX of Questions Related to SD Costs in the Study. (DOCX 34Â kb)
Additional file 18: of A MAGIC population-based genome-wide association study reveals functional association of GhRBB1_A07 gene with superior fiber quality in cotton
Creators: name: Md Islam
name: Thyssen, Gregory
name: Jenkins, Johnie
name: Linghe Zeng
name: Delhom, Christopher
name: McCarty, Jack
name: Deng, Dewayne
name: Hinchliffe, Doug
name: Jones, Don
name: Fang, David
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Title: Alignment of Acala Ultima (AU) and TM-1 (Ref) alleles of Gh_A07G2049. Primer locations for CFBid0004 are highlighted yellow. Description of data: This file contains alignment of parental line AU (row number 1) and TM-1 (row number 2) alleles of gene Gh_A07G2049. The 18 bp deletion in the coding sequence in AU at 17,875 to 17,893 bp on gene has also been presented. The forward and reverse primer sequences for indel marker CFBid0004 has been highlighted as yellow at either side of the 18 bp deletion. (PDF 4439 kb)
Additional file 1 of Clustering analysis of proteins from microbial genomes at multiple levels of resolution
Creators: name: Zaslavsky, Leonid
name: Ciufo, Stacy
name: Fedorov, Boris
name: Tatusova, Tatiana
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry

description: Table S1. Shows per-clade statistics for 131 abundant clades; number of proteins represents non-redundant set of non-identical protein sequences. (PDF 38 kb)
Additional file 1 of Systematic analysis of IGF2BP family members in non-small-cell lung cancer
Creators: name: Gong, Liping
name: Liu, Qin
name: Jia, Ming
name: Sun, Xifeng
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: Supplementary Material 1
Additional file 1: Table S1. of Comparison of pharmaceutical, illicit drug, alcohol, nicotine and caffeine levels in wastewater with sale, seizure and consumption data for 8 European cities
Creators: name: Baz-Lomba, Jose
name: Salvatore, Stefania
name: Gracia-Lor, Emma
name: Bade, Richard
name: Castiglioni, Sara
name: CastrignanĂ˛, Erika
name: Causanilles, Ana
name: Hernandez, Felix
name: Kasprzyk-Hordern, Barbara
name: Kinyua, Juliet
name: Ann-Kathrin McCall
name: Nuijs, Alexander Van
name: Ort, Christoph
name: PlĂłsz, Benedek
name: Pedram Ramin
name: Reid, Malcolm
name: Rousis, Nikolaos
name: Yeonsuk Ryu
name: Voogt, Pim De
name: Jorgen Bramness
name: Thomas, Kevin
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Wastewater samples information for the 8 European cities studied in 2015. The estimated population using the sewer network is showed in brackets (thousands of inhabitants within the catchment area). (DOCX 18 kb)
Reproducible Open Science with EGI Replay
Creators: name: Luna-Valero, Sebastian
Publisher: name: Zenodo
Year: 2024

description: In this webinar we showcase EGI Replay, a managed service for the EGI Community based on Binder. EGI Replay offers users the ability to effortlessly reproduce intricate calculations, simulations, and visualizations by importing Jupyter Notebooks and their respective runtime environments. With a single link, users can easily share their work with collaborators, making Replay an invaluable tool for workshops, scientific workflows, and team collaboration.

EGI Replay Service: https://www.egi.eu/service/replay/

Youtube recording: https://youtu.be/YbEoX1JH8_4
Additional file 2: of Cost-effectiveness of providing patients with information on managing mild low-back symptoms in an occupational health setting
Creators: name: J. Rantonen
name: J. Karppinen
name: A. Vehtari
name: S. Luoto
name: E. Viikari-Juntura
name: M. Hupli
name: A. Malmivaara
name: S. Taimela
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: The results of two cost-effectiveness analyses (CEA), based on the multiply imputed data (main analysis) and the complete case analysis (original data). Table also shows the mean monetary savings per person in the group comparisons of the intervention groups (Combined and Booklet) against the control (NC = natural course of LBP group) as well as the distribution of bootstrapped, simulated cases across the CE plane qvadrants (in percentages). [mean; 95%CI = 95 % confidence interval; ICER = incremental cost-effectiveness ratio; incremental costs and effects]. (DOCX 202 kb)
Additional file 3: of Trends and area variations in Potentially Preventable Admissions for COPD in Spain (2002–2013): a significant decline and convergence between areas
Creators: name: Librero, Julián
name: Ibañez-Beroiz, Berta
name: Peiró, Salvador
name: M. Ridao-López
name: Rodríguez-Bernal, Clara
name: Gómez-Romero, Francisco
name: Bernal-Delgado, Enrique
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: SPATIO-TEMPORAL EVOLUTION OF THE COPD HOSPITALIZATION RISKS. Data description: e-Figure 1 displays the spatiotemporal evolution of COPD-PPH hospitalization relative risk for each Health Service area compared to the Spain average over the whole period, and e-Figure 2 the posterior probabilities that these relative risks were higher than 1. (PDF 6214 kb)
Simulations of interfacial dynamics of complex fluids using diffuse interface method with adaptive meshing
Creators: name: Zhou, Chunfeng
Publisher: name: University of British Columbia
Year: 2008

description: A diffuse-interface finite-element method has been applied to simulate the flow of two-component rheologically complex fluids. It treats the interfaces as having a finite thickness with a phase-field parameter varying continuously from one phase to the other. Adaptive meshing is applied to produce fine grid near the interface and coarse mesh in the bulk. It leads to accurate resolution of the interface at modest computational costs. An advantage of this method is that topological changes such as interfacial rupture and coalescence happen naturally under a short-range force resembling the van der Waals force. There is no need for manual intervention as in sharp-interface model to effect such event. Moreover, this energy-based formulation easily incorporates complex rheology as long as the free energy of the microstructures is known. The complex fluids considered in this thesis include viscoelastic fluids and nematic liquid crystals. Viscoelasticity is represented by the Oldroyd-B model, derived for a dilute polymer solution as linear elastic dumbbells suspended in a Newtonian solvent. The Leslie-Ericksen model is used for nematic liquid crystals，which features distortional elasticity and viscous anisotropy. The interfacial dynamics of such complex fluids are of both scientific and practical significance. The thesis describes seven computational studies of physically interesting problems. The numerical simulations of monodisperse drop formation in microfluidic devices have reproduced scenarios of jet breakup and drop formation observed in experiments. Parametric studies have shown dripping and jetting regimes for increasing flow rates, and elucidated the effects of flow and rheological parameters on the drop formation process and the final drop size. A simple liquid drop model is used to study the neutrophil, the most common type of white blood cell, transit in pulmonary capillaries. The cell size, viscosity and rheological properties are found to determine the transit time. A compound drop model is also employed to account for the cell nucleus. The other four cases concern drop and bubble dynamics in nematic liquid crystals, as determined by the coupling among interfacial anchoring, bulk elasticity and anisotropic viscosity. In particular, the simulations reproduce unusual bubble shapes seen in experiments, and predict self-assembly of microdroplets in nematic media.
Plectranthias morgansi
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias morgansi

description: Plectranthias morgansi (Smith, 1961)
Pelontrus morgansi Smith, 1961
Holotype: SAIAB 134, 37 mm SL.
Type locality: off Lamu Kenya. Illustrations: Heemstra & Randall, 2009:12 (fig. 9), 17 (pl. 1E); Kuiter, 2004:113, left column middle fig.; Randall, 1980:159, fig. 21; Smith, 1961:365, fig. 3.
D: X, 13 to 15. A: III, 7 or 8. P: 13 or 14. C: 14 or 15–branched. V: 26 (10 + 16). S: 3. GR: 4 to 6 + 11 or 12. LL: 28 to 30. CP: 14.
Distribution: western Indian Ocean: off Kenya and South Africa.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 31, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283
Additional file 1: of Trends and area variations in Potentially Preventable Admissions for COPD in Spain (2002–2013): a significant decline and convergence between areas
Creators: name: Librero, Julián
name: Ibañez-Beroiz, Berta
name: Peiró, Salvador
name: M. Ridao-López
name: Rodríguez-Bernal, Clara
name: Gómez-Romero, Francisco
name: Bernal-Delgado, Enrique
Publisher: name: Figshare
Year: 2016
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy
subject: Hematology
subject: Plant Biology

description: CODES USED FOR IDENTIFICATION OF PPH-COPD ADMISSIONS. Data description: description of the criteria (including ICD-9-CM codes) for inclusion or exclusion of admissions as PPH-COPD. (PDF 58 kb)
LEARNING OBJECTIVE FUNCTIONS FOR AUTONOMOUS SYSTEMS
Creators: name: Liang, Zihao
Publisher: name: Purdue University Graduate School
Year: 2024
Subjects: classificationCode: 400199
subject: Aerospace engineering not elsewhere classified
classificationCode: 400705
subject: Control engineering
classificationCode: 461199
subject: Machine learning not elsewhere classified
classificationCode: 400799
subject: Control engineering, mechatronics and robotics not elsewhere classified

description: In recent years, advancements in robotics and computing power have enabled robots to master complex tasks. Nevertheless, merely executing tasks isn't sufficient for robots. To achieve higher robot autonomy, learning the objective function is crucial. Autonomous systems can effectively eliminate the need for explicit programming by autonomously learning the control objective and deriving their control policy through the observation of task demonstrations. Hence, there's a need to develop a method for robots to learn the desired objective functions. In this thesis, we address several challenges in objective learning for autonomous systems, enhancing the applicability of our method in real-world scenarios. The ultimate objective of the thesis is to create a universal objective learning approach capable of addressing a range of existing challenges in the field while emphasizing data efficiency and robustness. Hence, building upon the previously mentioned intuition, we present a framework for autonomous systems to address a variety of objective learning tasks in real-time, even in the presence of noisy data. In addition to objective learning, this framework is capable of handling various other learning and control tasks.The first part of this thesis concentrates on objective learning methods, specifically inverse optimal control (IOC). Within this domain, we have made three significant contributions aimed at addressing three existing challenges in IOC: 1) learning from minimal data, 2) learning without prior knowledge of system dynamics, and 3) learning with system outputs. The second part of this thesis aims to develop a unified IOC framework to address all the challenges previously mentioned. It introduces a new paradigm for autonomous systems, referred to as Online Control-Informed Learning. This paradigm aims to tackle various of learning and control tasks online with data efficiency and robustness to noisy data. Integrating optimal control theory, online state estimation techniques, and machine learning methods, our proposed paradigm offers an online learning framework capable of tackling a diverse array of learning and control tasks. These include online imitation learning, online system identification, and policy tuning on-the-fly, all with efficient use of data and computation resources while ensuring robust performance.
Plectranthias megalepis
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias megalepis

description: Plectranthias megalepis (Günther, 1880)
Anthias megalepis Günther, 1880
Lectotype: BMNH 1879.5.14.180, 62 mm SL (selected by Randall, 1980:157).
Type locality: Kai Islands, Indonesia, Challenger station 192, depth 236 meters. Illustration: Randall, 1980:156, fig. 19.
D: X, 15. A: III, 7. P: 13. GR: 17 (5 + 12). LL: 29. CP: 14.
Distribution: western Pacific: Kai Islands, Indonesia.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 31, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283
Additional file 1: of Cost-effectiveness of providing patients with information on managing mild low-back symptoms in an occupational health setting
Creators: name: J. Rantonen
name: J. Karppinen
name: A. Vehtari
name: S. Luoto
name: E. Viikari-Juntura
name: M. Hupli
name: A. Malmivaara
name: S. Taimela
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Health care (HC) resource usage and direct HC costs in all study groups (with the number of participants indicated) during the last 12Â months of the two-year follow-up according to available data (data not imputed). Number of units per group, unit cost, total cost per group and mean cost (per participant) with standard deviation (SD). Subtotals show units and costs in some basic HC categories. Zero unit/cost lines have been deleted. [HC, health care; OH, Occupational health; Booklet, Back Book group; Combined, Back Book and advice group; NC, Natural course group; PT, physiotherapist; OPR, other professional]. (DOCX 209 kb)
Additional file 2: of Trends and area variations in Potentially Preventable Admissions for COPD in Spain (2002–2013): a significant decline and convergence between areas
Creators: name: Librero, Julián
name: Ibañez-Beroiz, Berta
name: Peiró, Salvador
name: M. Ridao-López
name: Rodríguez-Bernal, Clara
name: Gómez-Romero, Francisco
name: Bernal-Delgado, Enrique
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Developmental Biology
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: TEMPORAL TRENDS BY AGE-GROUP, SEX AND REGION. Data description: e-Figure 1 and e-Figure 2 show the smoothed trends of PPH-CODP admissions stratified by four age groups and by autonomous regions, for men and women respectively. (PDF 9601 kb)
Additional file 1 of Risk factors for neonatal hypoxic ischemic encephalopathy and therapeutic hypothermia: a matched case-control study
Creators: name: Roto, Suoma
name: Nupponen, Irmeli
name: Kalliala, Ilkka
name: Kaijomaa, Marja
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Cell Biology
Biotechnology
Cancer

description: Supplementary Material 1
Additional file 6: Figure S1. of Hook tool manufacture in New Caledonian crows: behavioural variation and the influence of raw materials
Creators: name: Klump, Barbara
name: Sugasawa, Shoko
name: Clair, James St
name: Rutz, Christian
Publisher: name: Figshare
Year: 2015
Subjects: subject: Molecular Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Material and manufacture sequences of hooked stick tools in Experiment 2. (a) Photographs of sample stems for material scores 1, 4/5 and 8. The grey scale bars are 5Â mm. (b) Manufacture sequences grouped by material score of the provided plant stems. Within each material score, sequences are ordered by individual as follows: AN1, CR8, EU7, HA7, EV0, AM7 and CE0. For a description of colour-coding and manufacture stages, see Fig.Â 2 in the main text. (PDF 135 kb)
Plectranthias nanus Randall 1980
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias nanus

description: Plectranthias nanus Randall, 1980
Holotype: BPBM 7279, 25.2 mm SL.
Type locality: reef off northwest side of Cocos Island, Guam, Mariana Islands, western Pacific, depth 29 to 36.5 meters. Ilustrations: Heemstra & Randall, 2009:13, fig. 10; Kuiter, 2004:112, fig. left column mid page; Randall, 1980:160, fig. 22; Williams, et al,, 2013:173, fig. 6.
D: X, 13 to 16. A: III, 6 to 8 (usually 7). P: 14 to 16. C: 13 to 15, branched. V: 26 (10 + 16). S: 2. GR: 4 to 7 + 11 to 14. LL: 15 to 22 (incomplete, with mid-lateral series of pored scales on peduncle). CP: 14.
Distribution: widespread in the Indo–Pacific from the Red Sea to the Hawaiian, Line, and Marquesas islands, and Pitcairn Islands.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 31, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283
Additional file 3: of Cost-effectiveness of providing patients with information on managing mild low-back symptoms in an occupational health setting
Creators: name: J. Rantonen
name: J. Karppinen
name: A. Vehtari
name: S. Luoto
name: E. Viikari-Juntura
name: M. Hupli
name: A. Malmivaara
name: S. Taimela
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Marine Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Cost-effectiveness acceptability curves (CEAC) of the comparisons Booklet vs. NC (dotted line) and Combined vs. NC (solid line). CEAC line indicates the probability that the intervention is cost-effective in comparison to NC (natural course of mild LBP) when the maximum acceptable cost per SA day is 200â Ź [Booklet, Back Book booklet group; Combined, Back Book with oral advice group; CEA, cost-effectiveness analysis]. (DOCX 49 kb)
Plectranthias pallidus Randall & Hoese 1995
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias pallidus

description: Plectranthias pallidus Randall & Hoese, 1995
Holotype: AMS I.25800–005, 76.0 mm SL, female.
Type locality: off Townsville, Queensland, Australia (17°58'30" S, 147°00'30" E), depth 220 meters. Illustration: Randall & Hoese, 1995:330, fig. 2.
D: X, 16. A: III, 7. P: 13. C: 17 (9 + 8). V: 26 (10 + 16). S: 3. GR: 16 (5 + 11). LL: 28. CP: 14.
Distribution: Coral Sea: off Queensland, Australia.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 32, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283
Plectranthias nazcae Anderson 2008
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias nazcae

description: Plectranthias nazcae Anderson, 2008
Holotype: USNM 312926, 115 mm SL.
Type locality: eastern South Pacific near SW end of Nazca Ridge–25°43’ S, 85°22’ W in 185 to 200 meters. Illustrations: Anderson, 2008, figs. 1 & 2; Anderson & Heemstra, 2012, fig. 9.
D: X, 16. A: III, 7. P: 16 or 17. C: 17 (9 + 8). V: 26 (10 + 16). S: 3. GR: 28 to 31 (7 to 10 + 19 to 22). LL: 36 to 42. CP: 17 or 18.
Distribution: eastern South Pacific: Nazca Ridge.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 31, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283
MOESM1 of Hypoxia increases genome-wide bivalent epigenetic marking by specific gain of H3K27me3
Creators: name: Prickaerts, Peggy
name: Adriaens, Michiel
name: Beucken, Twan
name: Koch, Elizabeth
name: Dubois, Ludwig
name: Dahlmans, Vivian
name: Gits, Caroline
name: Evelo, Chris
name: Chan-Seng-Yue, Michelle
name: Wouters, Bradly
name: Voncken, Jan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Marine Biology

description: Additional file 1: Additional figures.
Additional file 3: Figure S1. of Immune genes and divergent antimicrobial peptides in flies of the subgenus Drosophila
Creators: name: Hanson, Mark
name: Phineas Hamilton
name: Perlman, Steve
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Computational Biology

description: Phylogenetic analysis of PGRP-SC1 and SC2 amino acid sequences using maximum likelihood. Support values indicate 100 bootstraps. Drosophila neotestacea has two PGRP-SC genes. The D. albomicans PGRP-SC1 signal peptide sequence is unresolved, and the current scaffold assembly in the D. guttifera genome does not contain the anterior region of its PGRP-SC1 orthologue. (PDF 45Â kb)
Plectranthias parini Anderson & Randall 1991
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias parini

description: Plectranthias parini Anderson & Randall, 1991
Holotype: USNM 312925, 84.7 mm SL.
Type locality: eastern South Pacific on the Sala y Gómez Ridge–25°02.6’ S, 97°29.2’ W in 260 to 272 meters. Illustrations: Anderson & Heemstra, 2012, fig. 10; Anderson & Randall, 1991, figs. 1 & 2; Randall, 1996, fig. 3.
D: X, 16. A: III, 7. P: 15 or 16. C: 17 (9 + 8). V: 26 (10 + 16). S: 3. GR: 26 to 28 (8 + 18 to 20). LL: 37 to 40. CP: 16 or 17.
Distribution: eastern South Pacific: Sala y Gómez Ridge and off Easter Island.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 32, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283
The effect of surfactant on the morphology of methane/propane clathrate hydrate crystals
Creators: name: Yoslim, Jeffry
Publisher: name: University of British Columbia
Year: 2009

description: Considerable research has been done to improve hydrate formation rate. One of the ideas is to introduce mechanical mixing which later tend to complicate the design and operation of the hydrate formation processes. Another approach is to add surfactant (promoter) that will improve the hydrate formation rate and also its storage capacity to be closer to the maximum hydrate storage capacity. Surfactant is widely known as a substance that can lower the surface or interfacial tension of the water when it is dissolved in it. Surfactants are known to increase gas hydrate formation rate, increase storage capacity of hydrates and also decrease induction time. However, the role that surfactant plays in hydrate crystal formation is not well understood. Therefore, understanding of the mechanism through morphology studies is one of the important aspects to be studied so that optimal industrial processes can be designed. In the present study the effect of three commercially available anionic surfactants which differ in its alkyl chain length on the formation/dissociation of hydrate from a gas mixture of 90.5 % methane – 9.5% propane mixture was investigated. The surfactants used were sodium dodecyl sulfate (SDS), sodium tetradecyl sulfate (STS), and sodium hexadecyl sulfate (SHS). Memory water was used and the experiments for SDS were carried out at three different degrees of under-cooling and three different surfactant concentrations. In addition, the effect of the surfactant on storage capacity of gas into hydrate was assessed. The morphology of the growing crystals and the gas consumption were observed during the experiments. The results show that branches of porous fibre-like crystals are formed instead of dendritic crystals in the absence of any additive. In addition, extensive hydrate crystal growth on the crystallizer walls is observed. Also a “mushy” hydrate instead of a thin crystal film appears at the gas/water interface. Finally, the addition of SDS with concentration range between 242ppm – 2200ppm (ΔT =13.10C) was found to increase the mole consumption for hydrate formation by 14.3 – 18.7 times. This increase is related to the change in hydrate morphology whereby a more porous hydrate forms with enhanced water/gas contacts.
Plectranthias pelicieri Randall & Shimizu 1994
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias pelicieri

description: Plectranthias pelicieri Randall & Shimizu, 1994
Holotype: BPBM 34646, 40.2 mm SL, male.
Type locality: Mauritius. Illustrations: Heemstra & Randall, 2009:14 (fig. 11), 17 (pl. 1F & G); Kuiter, 2004:110 & 111, figs. A–F; Randall & Shimizu, 1994:110 & 111, figs. 1 & 2.
D: X, 15 to 17. A: III, 7 or 8. P: 13 or 14. C: 17 (9 + 8). V: 26 (10 + 16). S: 3. GR: 4 to 6 + 11 or 12. LL: 28 to 30. CP: 14.
Distribution: southwestern Indian Ocean: South Africa, Mauritius; western Pacific: Izu Islands and Ryukyu Islands to New Caledonia.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 32, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283
Forest-floor greenhouse gas fluxes in a subalpine spruce forest: Continuous multi-year measurements, drivers, and budgets
Creators: name: Krebs, Luana
name: Burri, Susanne
name: Feigenwinter, Iris
name: Gharun, Mana
name: Meier, Philip
name: Buchmann, Nina
Publisher: name: ETH Zurich
Year: 2023

description: Forest ecosystems play an important role in the global carbon (C) budget by sequestering a large fraction of anthropogenic carbon dioxide (CO2) emissions and by acting as important methane (CH4) sinks. The forest-floor greenhouse gas (GHG; CO2, CH4 and nitrous oxide N2O) flux, i.e., from soil and understory vegetation, is one of the major components to consider when determining the C budget of forests. Although winter fluxes are essential to determine the annual C budget, only very few studies have examined long-term, year-round forest-floor GHG fluxes. Thus, we aimed to i) quantify the seasonal and annual variations of forest-floor GHG fluxes; ii) evaluate their drivers, including the effects of snow cover, timing, and amount of snow melt, and iii) calculate annual budgets of forest-floor GHG fluxes for a subalpine spruce forest in Switzerland. We measured GHG fluxes year-round during four years with four automatic large chambers at the ICOS Class 1 Ecosystem station Davos (CH-Dav). We applied random forest models to investigate environmental drivers and to gap-fill the flux time series. Annual and seasonal forest-floor CO2 emissions responded most strongly to soil temperature and snow depth (2.34±0.20 kg CO2 m-2 yr-1). No response of forest-floor CO2 emissions to leaf area index or photosynthetic photon flux density was observed, suggesting a strong direct control of environmental factors and a weak or even lacking indirect control of canopy biology. Furthermore, the forest-floor was a consistent CH4 sink (-19.1±1.8 g CO2-eq m-2 yr-1), with annual fluxes driven mainly by snow depth. Fluxes during winter were less important for the CO2 budget (6.0–7.3 %), while they contributed substantially to the annual CH4 budget (14.4–18.4 %). N2O fluxes were very low, negligible for the forest-floor GHG budget at our site. In 2022, the warmest year on record with also below-average precipitation at the Davos site, we observed a substantial increase in forest-floor CO2 emissions compared to other years. The mean forest-floor GHG budget indicated emissions of 2317±200 g CO2-eq m-2 yr-1 (mean±standard deviation over four years), with CO2 fluxes dominating and CH4 offsetting a small proportion (0.8 %) of the GHG budget. Due to the relevance of snow cover, we recommend year-round measurements of GHG fluxes with high temporal resolution. In a future with increasing temperatures and less snow cover due to climate change, we expect increased forest-floor CO2 emissions even at this subalpine site, with negative effects on its carbon sink behaviour.
description: EGUsphere
Additional file 1 of A physarum-inspired prize-collecting steiner tree approach to identify subnetworks for drug repositioning
Creators: name: Yahui Sun
name: Pathima Hameed
name: Verspoor, Karin
name: Halgamuge, Saman
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Pharmacology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 60506 Virology

description: This file contains a long table of the drug indexes and names. (PDF 42 kb)
Direct signatures of the formation time of galaxies
Creators: name: Donath, Yaniv
name: Lewandowski, Matthew
name: Senatore, Leonardo
Publisher: name: ETH Zurich
Year: 2023
Subjects: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
Astrophysics of Galaxies (astro-ph.GA)
FOS: Physical sciences

description: We show that it is possible to directly measure the formation time of galaxies using large-scale structure. In particular, we show that the large-scale distribution of galaxies is sensitive to whether galaxies form over a narrow period of time before their observed times, or are formed over a time scale on the order of the age of the Universe. Along the way, we derive simple recursion relations for the perturbative terms of the most general bias expansion for the galaxy density, thus fully extending the famous dark-matter recursion relations to generic tracers.
description: arXiv
Additional file 1: Table S1. of A novel method for quantifying the rate of embryogenesis uncovers considerable genetic variation for the duration of embryonic development in Drosophila melanogaster
Creators: name: HorvĂĄth, Barbara
name: Betancourt, Andrea
name: Kalinka, Alex
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology

description: Assay of measuring the duration of embryogenesisâ  imaging time points and corresponding embryonic development times (PDF 51Â kb)
Plectranthias randalli Fourmanoir & Rivaton 1980
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias randalli

description: Plectranthias randalli Fourmanoir & Rivaton, 1980
Holotype: MNHN 1979–0430, 102 mm SL.
Type locality: off Chesterfield Islands in the Coral Sea, depth 300 meters. Illustrations: Fourmanoir & Rivaton, 1980:27; Peristiwady, et al., 2014b:90, fig. 2.
D: X, 17. A: III, 7. P: 14. GR: 20 (7 + 13). LL: 39.
Distribution: western Pacific: Coral Sea; North Sulawesi, Indonesia; and Taiwan.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 32, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283
Additional file 4: Figure S2. of Immune genes and divergent antimicrobial peptides in flies of the subgenus Drosophila
Creators: name: Hanson, Mark
name: Phineas Hamilton
name: Perlman, Steve
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Example branch-site REL analysis of Drosophila diptericins. Branch colour indicates the strength of selection, with red corresponding to dN/dS > 5, grey to dN/dS = 1, and blue to dN/dS = 0. The width of the colour on each branch represents the proportion of sites in the corresponding class. Bolded branches indicate branches that evolved under positive selection. In this BSR analysis, there is strong evidence that the root branch of the DptC clade diverged through positive selection (p
MOESM2 of Hypoxia increases genome-wide bivalent epigenetic marking by specific gain of H3K27me3
Creators: name: Prickaerts, Peggy
name: Adriaens, Michiel
name: Beucken, Twan
name: Koch, Elizabeth
name: Dubois, Ludwig
name: Dahlmans, Vivian
name: Gits, Caroline
name: Evelo, Chris
name: Chan-Seng-Yue, Michelle
name: Wouters, Bradly
name: Voncken, Jan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Marine Biology

description: Additional file 2: Additional tables.
Divergent responses of evergreen needle-leaf forests in Europe to the 2020 warm winter
Creators: name: Gharun, Mana
name: Shekhar, Ankit
name: Hörtnagl, Lukas
name: Krebs, Luana
name: Arriga, Nicola
name: Migliavacca, Mirco
name: Roland, Marilyn
name: Gielen, Bert
name: Montagnani, Leonardo
name: Tomelleri, Enrico
name: Šigut, Ladislav
name: Peichl, Matthias
name: Zhao, Peng
name: Schmidt, Marius
name: Grünwald, Thomas
name: Korkiakoski, Mika
name: Lohila, Annalea
name: Buchmann, Nina
Publisher: name: ETH Zurich
Year: 2024

description: Relative to drought and heat waves, the effect of winter warming on forest CO2 fluxes during the dormant season has less been investigated, despite its relevance for net CO2 uptake in colder regions with higher carbon content in soils. Our objective was to test the effect of the exceptionally warm winter in 2020 on the winter CO2 budget of cold-adapted evergreen needle-leaf forests across Europe, and identify the contribution of soil and air temperature to changes in winter CO2 fluxes in response to warming. Our hypothesis was that warming in winter leads to higher emissions across colder sites due to increased ecosystem respiration. To test this hypothesis, we used 98 site-year eddy covariance measurements across 14 evergreen needle-leaf forests (ENFs) distributed from north to south of Europe (from Sweden to Italy). We used a data-driven approach to quantify the effect of air and soil temperature on changes in net ecosystem productivity (NEP) during the warm winter of 2020. Our results showed that the impact of warming was different across sites, as in the lower altitude and lower latitude sites positive soil temperature anomalies were larger, while positive air temperature anomalies were larger in the northern latitude and high-altitude sites. Warming in winter led to a divergent response across the sites. Out of 14 sites only in 3 sites net ecosystem productivity declined in winter significantly in response to warming. In addition, we observed that in the colder sites daytime NEP (that is dominated by photosynthesis) declined with warming of the air in winter, whereas in the warmer sites daytime NEP increased with warming of the soil. This shows that warming of the air – if not translated into a direct warming of the soil– might not trigger productivity in winter if the soil within the rooting zone remains frozen. Forests within the same plant functional type category can exhibit differing reactions to winter warming and to predict their responses accurately it is crucial to account for variations in local climate, physiology, and structure simultaneously.
description: EGUsphere
Additional file 1 of Atherogenic Index of Plasma as a Mediator in the association between Body Roundness Index and Depression: insights from NHANES 2005–2018
Creators: name: Zhang, Genshan
name: Zhang, Haokun
name: Fu, Jie
name: Zhao, Yufeng
Publisher: name: figshare
Year: 2024
Subjects: Biophysics
Molecular Biology
Biotechnology
Cancer
Science Policy
Mental Health

description: Supplementary Material 1
Plectranthias retrofasciatus Fourmanoir & Randall 1979
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias retrofasciatus

description: Plectranthias retrofasciatus Fourmanoir & Randall, 1979
Holotype: BPBM 22487, 61.8 mm SL, male (?).
Type locality: New Caledonia, Gazelle Pass, near northwest tip of island, depth 200 meters. Illustrations: Fourmanoir & Randall, 1979:320, fig. 2; Peristiwady, et al., 2014b:88, fig. 1.
D: X, 16. A: III, 7. P: 13. C: 17. V: 26. GR: 16 (5 + 11). LL: 29. CP: 14.
Distribution: western South Pacific: off New Caledonia and North Sulawesi, Indonesia.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 32, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283
Additional file 7: Table S3. of A novel method for quantifying the rate of embryogenesis uncovers considerable genetic variation for the duration of embryonic development in Drosophila melanogaster
Creators: name: HorvĂĄth, Barbara
name: Betancourt, Andrea
name: Kalinka, Alex
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology

description: Top GWAS results for embryogenesis length and the corresponding DGRP phenotypes (PDF 124Â kb)
Preventive control of ammonia and odor emissions during the active phase of poultry manure composting
Creators: name: Zhang, Wenxiu
Publisher: name: University of British Columbia
Year: 2009

description: Traditional measures used in the composting industry for ammonia and odor emissions control are those involving collection and treatment such as thermal oxidation, adsorption, wet scrubbing and biofiltration. However, these methods do not address the source of the odor generation problem. The primary objective of this thesis research was to develop preventive means to minimize ammonia and odor emissions, and maximize nitrogen conservation to increase the agronomic value of compost. Laboratory-scale experiments were performed to examine the effectiveness of various technologies to minimize these emissions during the active phase of composting. These techniques included precipitating ammonium into struvite in composting matrix before it release to outside environment; the use of chemical and biological additives in the form of yeast, zeolite and alum; and the manipulation of key operational parameters during the composting process. The fact that struvite crystals were formed in manure composting media, as verified by both XRD and SEM-EDS analyses, represents novel findings from this study. This technique was able to reduce ammonia emission by 40-84%, while nitrogen content in the finished compost was increased by 37-105%. The application of yeast and zeolite with dosages of 5-10% enhanced the thermal performance of composting and the degree of degradation, and ammonia emission was reduced by up to 50%. Alum was found to be the most effective additive for both ammonia and odor emission control; ammonia emission decreased by 45-90% depending on the dosage, and odor emission assessed via an dynamic dilution olfactometer was reduced by 44% with dosages above 2.5%. This study reaffirmed that aeration is the most influential factor to odor emission. An optimal airflow rate for odor control would be 0.6 L/min.kg dry matter with an intermittent aeration system. Quantitative relationships between odor emission and key operational parameters were determined, which would enable “best management practices” to be devised and implemented for composting. An empirical odor predictive model was developed to provide a simple and direct means for simulation of composting odor emissions. The effects of operating conditions were incorporated into the model with multiplicative algorithm and linearization approximation approach. The model was validated with experimental observations.
Plectranthias robertsi Randall & Hoese 1995
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias robertsi

description: Plectranthias robertsi Randall & Hoese, 1995
Holotype: AMS I.20968–003, 89.5 mm SL, female.
Type locality: east of Hinchinbrook Island, Queensland, Australia, depth 320 to 356 meters. Illustration: Randall & Hoese, 1995:329, fig.1.
D: X, 15. A: III, 7. P: 15 or 16. C: 17 (9 + 8). V: 26 (10 + 16). S: 2. GR: 6 or 7 + 13 or 14. LL: 32 to 35. CP: 15. Distribution: western South Pacific: off Queensland, Australia.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on pages 32-33, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283