cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
The X-shaped radio galaxy J0725+5835 is associated with an AGN pair
Creators: name: Yang, Xiaolong
name: Ji, Jialu
name: Joshi, Ravi
name: Yang, Jun
name: An, Tao
name: Wang, Ran
name: Ho, Luis C.
name: Roberts, David H.
name: Saripalli, Lakshmi
Publisher: name: arXiv
Year: 2022
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: X-shaped radio galaxies (XRGs) are those that exhibit two pairs of unaligned radio lobes (main radio lobes and "wings"), one of the promising models for the peculiar morphology is jet re-orientation. To clarify it, we conducted the European VLBI Network (EVN) 5 GHz observation of an XRG J0725+5835, which resembles the archetypal binary AGNs 0402+379 in radio morphology but it is larger in angular size. In our observation, two milliarcsec (mas) scale radio components with non-thermal radio emission are detected, each of them coincides with an optical counterpart with similar photometric redshift and (optical and infrared) magnitude, corresponding to dual active nuclei. Furthermore, with the improved VLA images, we find a bridge between the two radio cores and a jet bending in the region surrounding the companion galaxy, which further supports the interplay between the main and companion galaxies. In addition, we also report the discovery of an arcsec-scale jet in the companion. Given the projected separation of $\sim100$ kpc between the main and companion galaxies, XRG J0725+5835 is likely associated with a dual jetted-AGN system. In both EVN and VLA observations, we find signatures that the jet is changing its direction, which is likely responsible for the X-shaped morphology. On the origin of jet re-orientation, several scenarios are discussed.
description: 12 pages, 8 figures, 2 table, published in ApJ
Intentional research design in implementation science: implications for the use of nomothetic and idiographic assessment
Creators: name: Rutt, Christopher
name: McLeod, Bryce D.
name: Lewis, Cara C.
name: Landes, Sara J.
name: Weiner, Bryan J.
name: Lyon, Aaron R.
name: Stanick, Cameo
name: Jensen-Doss, Amanda
name: Connors, Elizabeth
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2017

description: The advancement of implementation science is dependent on identifying assessment strategies that can address implementation and clinical outcome variables in ways that are valid, relevant to stakeholders, and scalable. This paper presents a measurement agenda for implementation science that integrates the previously disparate assessment traditions of idiographic and nomothetic approaches. Although idiographic and nomothetic approaches are both used in implementation science, a review of the literature on this topic suggests that their selection can be indiscriminate, driven by convenience, and not explicitly tied to research study design. As a result, they are not typically combined deliberately or effectively. Thoughtful integration may simultaneously enhance both the rigor and relevance of assessments across multiple levels within health service systems. Background on nomothetic and idiographic assessment is provided as well as their potential to support research in implementation science. Drawing from an existing framework, seven structures (of various sequencing and weighting options) and five functions (Convergence, Complementarity, Expansion, Development, Sampling) for integrating conceptually distinct research methods are articulated as they apply to the deliberate, design-driven integration of nomothetic and idiographic assessment approaches. Specific examples and practical guidance are provided to inform research consistent with this framework. Selection and integration of idiographic and nomothetic assessments for implementation science research designs can be improved. The current paper argues for the deliberate application of a clear framework to improve the rigor and relevance of contemporary assessment strategies.
Extra $Z^\prime$s and $W^\prime$s in Heterotic--String Derived Models
Creators: name: Faraggi, Alon E.
name: Guzzi, Marco
Publisher: name: arXiv
Year: 2015
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The ATLAS collaboration recently recorded possible excess in the di--boson production at the di--boson invariant mass at around 2 TeV. Such an excess may be produced if there exist additional $Z^\prime$ and/or $W^\prime$ at that scale. We survey the extra $Z^\prime$s and $W^\prime$s that may arise from semi--realistic heterotic string vacua in the free fermionic formulation in seven distinct cases including: $U(1)_{Z^\prime}\in SO(10)$; family universal $U(1)_{Z^\prime}$ not in $SO(10)$; non--universal $U(1)_{Z^\prime}$; hidden sector $U(1)$ symmetries and kinetic mixing; left--right symmetric models; Pati--Salam models; leptophobic and custodial symmetries. Each case has a distinct signature associated with the extra symmetry breaking scale. In one of the cases we explore the discovery potential at the LHC using resonant leptoproduction. Existence of extra vector boson with the reported properties will significantly constrain the space of allowed string vacua.
description: 25 pages, 2 figures. Standard LaTeX. References added. Published version
title: Exploring the environmental sustainability tensions in leagile manufacturing within the furniture industry.
Creators: name: Sikabbwele, Kellys
Publisher: name: University of Liverpool Repository
Year: 2026

description: This research aims to understand the tensions that emerge from misaligned logics between environmental sustainability and leagile manufacturing practices. Early research has hinted at both supportive and competing relationship, but the empirical evidence so far is limited in articulating the inherent tensions and ways to manage them in leagile manufacturing to enhance environmental sustainability. Although a favourable relationship between lean and sustainability performance has been discussed in past literature, manufacturing firms often adopt a combination of lean and agile approaches through a decoupling point, which has not been analysed in past literature. Therefore, there remains a need to explore these tensions and analyse how the decoupling point impacts supply chains' sustainability performance. This research draws on institutional logic perspective understand the nature of the emergent tensions. It argues that tensions in the focal firm result from the presence of misaligned institutional logics between leagile manufacturing practices and environmental sustainability goals. Paradox theory offers a lens for analysing the organizational responses to the tensions, focusing on the mechanisms for navigating these tensions to enhance environmental sustainability performance.
VindKraftNet meeting on the 17th of August 2022 at Risø/DTU, Denmark
Creators: name: Landberg, Lars
Publisher: name: Zenodo
Year: 2022
Subjects: vindkraftnet, wind energy, wind resource

description: VindKraftNet :: Open topic
 17th August 2022 DTU Wind and Energy Systems; Risø, Denmark Presentations 0) Welcome and presentation of participants Lars Landberg, DNV
 1) Results of 200 m - LiDAR verifications  Martin Richter-Rose, PAVANA
 2) Open data formats for data exchange  Thomas Sørensen, EMD international
 3) Do generic turbine models work for loads and lifetime? Lasse Svenningsen, EMD International
 4) LiDAR-Only Bandpass Adjusted Turbulence  Sayantan Chattopadhyay, Vestas
 5) WindKit: a Python framework for wind resource assessment applications  Rogier Ralph Floors, DTU Wind and Energy Systems
 6) Energy islands in a wind resource perspective  Jake Badger, DTU Wind and Energy Systems
 7) Wind-validation: an open-source python package to simplify validation  Rogier Ralph Floors, DTU Wind and Energy Systems
 8) The DTU wind data base Kurt S Hansen, DTU Wind and Energy Systems
Peer Connect for African American breast cancer survivors and caregivers: a train-the-trainer approach for peer support
Creators: name: Allicock, Marlyn
name: Carpenter, William R.
name: Vines, Anissa I.
name: Cherry, Michele W.
name: Johnson, La-Shell
name: Belle, Denise G.
name: Haynes-Maslow, Lindsey
name: Phillips, Ray
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2017

description: Racial disparities in breast cancer survivorship are a major concern nationally. How survivors cope with cancer and re-frame their lives is a critical part of survivorship. Community-academic research partnerships may facilitate access to much-needed psychosocial support for African American survivors and caregivers in rural areas, but drivers of successful intervention implementation are not well understood. The purpose of this study was to describe the training and evaluation of Community Coaches and Guides (i.e., peer supporters) using the Peer Connect program for African American breast cancer survivors and caregivers. Community engagement strategies were used to implement the training component of Peer Connect, an evidence-based program grounded in the Diffusion of Innovation Theory utilizing motivational interviewing techniques (MI) and a "train-the-trainer" model. Quantitative and qualitative methods examined implementation outcomes of feasibility, MI fidelity, and acceptability-precursor outcomes that must be achieved before examining intervention impact vis-à-vis changes in support care. Training was feasible to implement and replicable by the trained Community Coaches. Beyond feasibility and replicability, success was modest regarding MI fidelity. Benefits (e.g., serving as role models and having safe sources of support) and lessons learned (e.g., need for additional quality control) were identified as both facilitators and barriers to implementation and as factors that could impact the effectiveness of community-engaged programs to improve survivorship outcomes. Peer Connect, like other programs that employ community-engagement strategies, holds promise to meet the psychosocial support needs of diverse rural cancer survivor populations.
Closed-loop separation control over a sharp edge ramp using Genetic Programming
Creators: name: Debien, Antoine
name: von Krbek, Kai A. A. F.
name: Mazellier, Nicolas
name: Duriez, Thomas
name: Cordier, Laurent
name: Noack, Bernd R.
name: Abel, Markus W.
name: Kourta, Azeddine
Publisher: name: arXiv
Year: 2015
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: We experimentally perform open and closed-loop control of a separating turbulent boundary layer downstream from a sharp edge ramp. The turbulent boundary layer just above the separation point has a Reynolds number $Re_θ\approx 3\,500$ based on momentum thickness. The goal of the control is to mitigate separation and early re-attachment. The forcing employs a spanwise array of active vortex generators. The flow state is monitored with skin-friction sensors downstream of the actuators. The feedback control law is obtained using model-free genetic programming control (GPC) (Gautier et al. 2015). The resulting flow is assessed using the momentum coefficient, pressure distribution and skin friction over the ramp and stereo PIV. The PIV yields vector field statistics, e.g. shear layer growth, the backflow area and vortex region. GPC is benchmarked against the best periodic forcing. While open-loop control achieves separation reduction by locking-on the shedding mode, GPC gives rise to similar benefits by accelerating the shear layer growth. Moreover, GPC uses less actuation energy.
description: 24 pages, 24 figures, submitted to Experiments in Fluids
Begonia benaratensis S. Julia
Creators: name: Sang, Julia
name: Kiew, Ruth
name: Yiing, Ling Chea
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Cucurbitales
Begoniaceae
Begonia
Begonia benaratensis

description: 3. Begonia benaratensis S.Julia
 Phytotaxa 99(1) (2013) 6; Kiew et al., Guide to Begonias of Borneo (2015) 48. Type: — MALAYSIA. Borneo, Sarawak, Marudi District: Gunung Mulu NP, Gunung Benarat, 15 April 2012, Julia et al. SFC 2804 (holotype SAR!).
 Distribution: — MALAYSIA. Borneo. Endemic in Sarawak; so far recorded only from Gunung Benarat.
 Habitat: —Restricted to limestone habitats on lightly shaded mossy vertical cliff faces at 130–300 m elevation.
 Additional specimens examined: — MALAYSIA. Borneo. Sarawak. Marudi District: Gunung Mulu NP – Gunung Benarat, Baie et al. SFC 2835 (SAR).
 Notes: —A creeping species, rooting at the nodes with slender stems and small plain green leaves, 1.5–4 × 2.2–5 cm. The whole plant is glabrous. The fruit pedicel is ca. 15 mm long and pendent. At the Botanical Research Centre, Semenggoh, Sarawak, plant material collected from Gunung Benarat that was planted in pocket of soils on a concrete wall grew well and now flower throughout the year.
description: Published as part of Sang, Julia, Kiew, Ruth & Yiing, Ling Chea, 2018, The Begonia flora of Gunung Mulu and Gunung Buda National Parks, Sarawak, Borneo, including five new species, pp. 58-79 in Phytotaxa 381 (1) on page 63, DOI: 10.11646/phytotaxa.381.1.9, http://zenodo.org/record/13726112
Landau levels and Shubnikov-de Haas oscillations in monolayer transition metal dichalcogenide semiconductors
Creators: name: Kormanyos, Andor
name: Rakyta, Peter
name: Burkard, Guido
Publisher: name: arXiv
Year: 2015
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We study the Landau level spectrum using a multi-band $\mathbf{k}\cdot\mathbf{p}$ theory in monolayer transition metal dichalcogenide semiconductors. We find that in a wide magnetic field range the Landau levels can be characterized by a harmonic oscillator spectrum and a linear-in-magnetic field term which describes the valley degeneracy breaking. The effect of the non-parabolicity of the band-dispersion on the Landau level spectrum is also discussed. Motivated by recent magnetotransport experiments, we use the self-consistent Born approximation and the Kubo formalism to calculate the Shubnikov de-Haas oscillations of the longitudinal conductivity. We investigate how the doping level, the spin-splitting of the bands and the broken valley degeneracy of the Landau levels affect the magnetoconductance oscillations. Motivated by recent experiments we consider monolayer MoS$_2$ and WSe$_2$ as concrete examples and compare the results of numerical calculations and an analytical formula which is valid in the semiclassical regime. Finally, we briefly analyze the recent experimental results (Reference [18]) using the theoretical approach we have developed.
RNA-seq of Pacific oyster Crassostrea gigas under different developmental stages and stress treatments
Creators: name: BGI
Publisher: name: CNGB
Year: 2011
Subjects: Transcriptome or Gene expression
Multiisolate

description: Deep sequencing of samples from different development stages, different adult organs and different stress treatments of Pacific oyster Crassostrea gigasOverall design: Samples of 38 developmental stages from egg to juvenile were analyzed using single-end 49 bp RNA-seq. Two libraries mixed by RNAs from different developmental stages were analyzed using paired-end 90 bp RNA-seq. A total of 11 samples mainly from 8 organs (mantle, gill,adductor muscle, digestive gland, hemocyte, labial palp, female gonad and male gonad) were analyzed using paired-end 90 bp RNA-seq. At the same time, single-end 49 bp RNA-seq was conducted on 61 samples collected from adult oysters subjected to 9 types of environmental stressors (exposure to air, salinity, temperature, and exposure to metals).
Transcriptome sequencing of Pteropus alecto and Myotis davidii
Creators: name: BGI
Publisher: name: CNGB
Year: 2012
Subjects: Transcriptome or Gene expression
Multispecies

description: Deep sequencing of mRNA from Pteropus alecto and Myotis davidiiOverall design: Analysis of ploy(A)+ RNA of Pteropus alecto and Myotis davidii
I confini dell'esclusione: il processo storico di costruzione della cittadinanza alla luce dei lavori di Norbert Elias
Creators: name: Gargiulo, Enrico
Publisher: name: Cambio. Rivista sulle Trasformazioni Sociali
Year: 2016

description: Cambio. Rivista sulle Trasformazioni Sociali, Vol. 1 No. 2 (2011)
Researcher readiness for participating in community-engaged dissemination and implementation research: a conceptual framework of core competencies
Creators: name: Carter-Edwards, Lori
name: Powell, Byron J.
name: Enga, Zoe K.
name: Rohweder, Catherine
name: Scott, Jennifer E.
name: Young, Tiffany L.
name: Corbie-Smith, Giselle
name: Shea, Christopher M.
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2017

description: Participating in community-engaged dissemination and implementation (CEDI) research is challenging for a variety of reasons. Currently, there is not specific guidance or a tool available for researchers to assess their readiness to conduct CEDI research. We propose a conceptual framework that identifies detailed competencies for researchers participating in CEDI and maps these competencies to domains. The framework is a necessary step toward developing a CEDI research readiness survey that measures a researcher's attitudes, willingness, and self-reported ability for acquiring the knowledge and performing the behaviors necessary for effective community engagement. The conceptual framework for CEDI competencies was developed by a team of eight faculty and staff affiliated with a university's Clinical and Translational Science Award (CTSA). The authors developed CEDI competencies by identifying the attitudes, knowledge, and behaviors necessary for carrying out commonly accepted CE principles. After collectively developing an initial list of competencies, team members individually mapped each competency to a single domain that provided the best fit. Following the individual mapping, the group held two sessions in which the sorting preferences were shared and discrepancies were discussed until consensus was reached. During this discussion, modifications to wording of competencies and domains were made as needed. The team then engaged five community stakeholders to review and modify the competencies and domains. The CEDI framework consists of 40 competencies organized into nine domains: perceived value of CE in D&I research, introspection and openness, knowledge of community characteristics, appreciation for stakeholder's experience with and attitudes toward research, preparing the partnership for collaborative decision-making, collaborative planning for the research design and goals, communication effectiveness, equitable distribution of resources and credit, and sustaining the partnership. Delineation of CEDI competencies advances the broader CE principles and D&I research goals found in the literature and facilitates development of readiness assessments tied to specific training resources for researchers interested in conducting CEDI research.
Band gap and broken chirality in single-layer and bilayer graphene
Creators: name: Varlet, Anastasia
name: Liu, Ming-Hao
name: Bischoff, Dominik
name: Simonet, Pauline
name: Taniguchi, Takashi
name: Watanabe, Kenji
name: Richter, Klaus
name: Ihn, Thomas
name: Ensslin, Klaus
Publisher: name: arXiv
Year: 2015
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Chirality is one of the key features governing the electronic properties of single- and bilayer graphene: the basics of this concept and its consequences on transport are presented in this review. By breaking the inversion symmetry, a band gap can be opened in the band structures of both systems at the K-point. This leads to interesting consequences for the pseudospin and, therefore, for the chirality. These consequences can be accessed by investigating the evolution of the Berry phase in such systems. Experimental observations of Fabry-Perot interference in a dual-gated bilayer graphene device are finally presented and are used to illustrate the role played by the band gap on the evolution of the pseudospin. The presented results can be attributed to the breaking of the chirality in the energy range close to the gap.
description: To be published in Physica Status Solidi (RRL) - Rapid Research Letters
Transcriptome sequencing of Prunus mume for different tissues.
Creators: name: BGI
Publisher: name: CNGB
Year: 2012
Subjects: Transcriptome or Gene expression
Multiisolate

description: We have sequenced a wild Prunus mume and constructed a reference sequence for this genome. In order to improve quality of gene models, RNA samples of five tissues (bud, leaf, root, stem, fruit) were extracted from the Prunus mume. To investigate tissue specific expression using the reference genome assembly and annotated genes, we extracted RNA samples of different tissues and conducted transcriptome sequencing and DEG analysis.Overall design: Five RNA pools were created corresponding to different tissues of the Prunus mume.
Dynamics of bulk fluctuations in a lamellar phase studied by coherent x-ray scattering
Creators: name: Constantin, Doru
name: Brotons, Guillaume
name: Salditt, Tim
name: Freyssingeas, Eric
name: Madsen, Anders
Publisher: name: arXiv
Year: 2015
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: Using x-ray photon correlation spectroscopy, we studied the layer fluctuations in the lamellar phase of an ionic lyotropic system. We measured the relaxation rate of in-plane (undulation) fluctuations as a function of the wave vector. Static and dynamic results obtained during the same experiment were combined to yield the values of both elastic constants of the lamellar phase (compression and bending moduli) as well as that of the sliding viscosity. The results are in very good agreement with dynamic light-scattering data, validating the use of the technique in ordered phases.
Genome-wide and single-base resolution DNA methylomes of the Pacific oyster Crassostrea gigas provide insight into the evolution of invertebrate CpG methylation
Creators: name: BGI
Publisher: name: CNGB
Year: 2012
Subjects: Epigenomics
Multiisolate

description: Comparative analysis of the oyster DNA methylomes and that of other animal species revealed that the characteristics of DNA methylation were generally conserved during invertebrate evolution, while some unique features were derived in the insect lineage. The preference of methylation modification on genes originating in the eukaryotic ancestor rather than the oldest genes is unexpected, probably implying that the emergence of methylation regulation in these 'relatively young' genes was critical for the origin and radiation of eukaryotes.Overall design: Two Pacific oysters were used for methylome profiling in this study. One is an inbred oyster (05x7-T-G4-1.051#20) that was produced by four generations of sister-brother mating (coefficient of inbreeding, F = 0.59) and has been used for whole genome-sequencing. The other was a wild oyster collected from Weihai, Shandong Province, China. Both oysters were about two years of age. The inbred oyster was produced as single oysters and cultured intertidally at southern Puget Sound, Washington, USA, where the water temperature ranges from 7 to 16 °C. The wild oyster was an attached oyster from an oyster farm in its native range at Weihai, China, where the water temperature ranges from 4 to 27 °C.For DNA from each of the two individuals, we constructed two independent libraries. For each library, 5 µg genomic DNA mixed with 25 ng cl857 Sam7 Lambda DNA was fragmented by sonication with a Covaris S2 system (Covaris, MA) to a mean size of approximately 250 bp. End-repair, 3’-end dA addition and adapter ligation were subsequently performed. Methylated adapters were used according to the manufacturer’s instructions (Illumina). The bisulfite conversion of DNA was performed according to a modified NH4HSO3-based protocol and amplified with nine cycles of PCR. All libraries were subjected to 90-bp paired-end sequencing on an Illumina HiSeq 2000 platform.
New parallelizable schemes for integrating the Dissipative Particle Dynamics with Energy Conservation
Creators: name: Homman, A. -A.
name: Maillet, J. -B.
name: Roussel, J.
name: Stoltz, G.
Publisher: name: arXiv
Year: 2015
Subjects: subject: Computational Physics (physics.comp-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: This work presents new parallelizable numerical schemes for the integration of Dissipative Particle Dynamics with Energy conservation (DPDE). So far, no numerical scheme introduced in the literature is able to correctly preserve the energy over long times and give rise to small errors on average properties for moderately small timesteps, while being straightforwardly parallelizable. We present in this article two new methods, both straightforwardly parallelizable, allowing to correctly preserve the total energy of the system. We illustrate the accuracy and performance of these new schemes both on equilibrium and nonequilibrium parallel simulations.
Strategies for Optimizing End-to-End Artificial Intelligence Pipelines on Intel Xeon Processors
Creators: name: Arunachalam, Meena
name: Sanghavi, Vrushabh
name: Yao, Yi A
name: Zhou, Yi A
name: Wang, Lifeng A
name: Wen, Zongru
name: Ammbashankar, Niroop
name: Wang, Ning W
name: Mohammad, Fahim
Publisher: name: arXiv
Year: 2022
Subjects: subject: Machine Learning (cs.LG)
subject: Artificial Intelligence (cs.AI)
subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Distributed, Parallel, and Cluster Computing (cs.DC)
subject: Neural and Evolutionary Computing (cs.NE)
subject: FOS: Computer and information sciences

description: End-to-end (E2E) artificial intelligence (AI) pipelines are composed of several stages including data preprocessing, data ingestion, defining and training the model, hyperparameter optimization, deployment, inference, postprocessing, followed by downstream analyses. To obtain efficient E2E workflow, it is required to optimize almost all the stages of pipeline. Intel Xeon processors come with large memory capacities, bundled with AI acceleration (e.g., Intel Deep Learning Boost), well suited to run multiple instances of training and inference pipelines in parallel and has low total cost of ownership (TCO). To showcase the performance on Xeon processors, we applied comprehensive optimization strategies coupled with software and hardware acceleration on variety of E2E pipelines in the areas of Computer Vision, NLP, Recommendation systems, etc. We were able to achieve a performance improvement, ranging from 1.8x to 81.7x across different E2E pipelines. In this paper, we will be highlighting the optimization strategies adopted by us to achieve this performance on Intel Xeon processors with a set of eight different E2E pipelines.
description: 10 pages, 11 figures, 3 tables
From the Civilizing Process to the Re-discovery of Self Identity. Norbert Elias and Recent Changes in the Italian Sport Activities
Creators: name: Dell'Aquila, Paolo
Publisher: name: Cambio. Rivista sulle Trasformazioni Sociali
Year: 2016

description: Cambio. Rivista sulle Trasformazioni Sociali, Vol. 1 No. 2 (2011)
Genome Sequencing and Comparative Transcriptomics of Race1 and Race4 of Banana pathogen: Fusarium oxysporum f.sp. Cubense
Creators: name: BGI
Publisher: name: CNGB
Year: 2012
Subjects: Transcriptome or Gene expression
Multiisolate

description: Deep sequencing of mRNA from Fusarium oxysporum f. sp. Cubense 1 and 4 after infecting Musa acuminata 0h and 48h.Overall design: Analysis of ploy(A)+ RNA of different hours after infecting of Musa acuminata
Insights into psychosis risk from leukocyte microRNA expression
Creators: name: Mathalon,
name: Glatt,
name: Cannon,
name: Addington,
name: McGlashan,
name: Perkins,
name: Stark,
name: Yeo,
name: Seidman,
name: Tsuang,
name: Bearden,
name: Cornblatt,
name: Walker,
name: Woods,
name: Cadenhead,
name: Jeffries,
name: Chandler,
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2016

description: Dysregulation of immune system functions has been implicated in schizophrenia, suggesting that immune cells may be involved in the development of the disorder. With the goal of a biomarker assay for psychosis risk, we performed small RNA sequencing on RNA isolated from circulating immune cells. We compared baseline microRNA (miRNA) expression for persons who were unaffected (n=27) or who, over a subsequent 2-year period, were at clinical high risk but did not progress to psychosis (n=37), or were at high risk and did progress to psychosis (n=30). A greedy algorithm process led to selection of five miRNAs that when summed with +1 weights distinguished progressed from nonprogressed subjects with an area under the receiver operating characteristic curve of 0.86. Of the five, miR-941 is human-specific with incompletely understood functions, but the other four are prominent in multiple immune system pathways. Three of those four are downregulated in progressed vs. nonprogressed subjects (with weight -1 in a classifier function that increases with risk); all three have also been independently reported as downregulated in monocytes from schizophrenia patients vs. unaffected subjects. Importantly, these findings passed stringent randomization tests that minimized the risk of conclusions arising by chance. Regarding miRNA–miRNA correlations over the three groups, progressed subjects were found to have much weaker miRNA orchestration than nonprogressed or unaffected subjects. If independently verified, the leukocytic miRNA biomarker assay might improve accuracy of psychosis high-risk assessments and eventually help rationalize preventative intervention decisions.
Begonia chlorocarpa Sands
Creators: name: Sang, Julia
name: Kiew, Ruth
name: Yiing, Ling Chea
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Cucurbitales
Begoniaceae
Begonia
Begonia chlorocarpa

description: 4. Begonia chlorocarpa Irmsch. ex Sands
 Plants of Mt. Kinabalu (2001) 149; Kiew et al., Guide to Begonias of Borneo (2015) 74. Type: — MALAYSIA. Borneo. Sabah. Ranau District: Mt. Kinabalu, Liwagu River, 3 September 1961, Chew, Corner & Stainton 2693 (holotype K!; isotype SAN n.v.).
 Distribution: — MALAYSIA. Endemic in Borneo (Sabah and Sarawak). In Sarawak, the species is recorded from six localities: Marudi District (Bario, Pulong Tau NP and Gunung Mulu NP), Belaga District (Sg. Abit) and Lawas District (Sungai Bo’r and Sg. Dualan) (Figure 4).
 Habitat: —Hill to lower montane forests at 1000–1500 m elevation on shaded slopes or banks of small streams.
 Additional specimens examined: — MALAYSIA. Borneo. Sarawak. Marudi District: Pulong Tau NP – NW of Bario, Pearce et al. S 95144 (SAR), S 95826 (SAR); Gunung Mulu NP – Camp 3, Ling et al, SFC 6929 (SAR); Bario, Batu Lawi, Awa S 50490 (SAR); Lawas District: Ravenscourt – Sungai Bor, Ling et al. SFC 5978 (SAR); Belaga District: Danum FMU – Coupe 1, Abit Water Catchment, Ling et al. SFC 8275 (SAR).
 Notes: —A robust fleshy herb with large, thick leaves to 35 × 28 cm and densely woolly stems, leaves and petioles, it is the only begonia in Borneo that has a fleshy green, berry-like fruit with thick wings. Tebbitt (2003) drew attention to the wide distribution of the berry-fruited species. For example, Peninsular Malaysian B. longifolia Blume ranges from Java to China. Begonia chlorocarpa is no exception. First described from Gunung Kinabalu and the Crocker Range in Sabah, it has since been collected from several other mountain peaks in Sarawak. It is a new record for Gunung Mulu NP, where it is found at 1450 m elevation.
description: Published as part of Sang, Julia, Kiew, Ruth & Yiing, Ling Chea, 2018, The Begonia flora of Gunung Mulu and Gunung Buda National Parks, Sarawak, Borneo, including five new species, pp. 58-79 in Phytotaxa 381 (1) on pages 63-64, DOI: 10.11646/phytotaxa.381.1.9, http://zenodo.org/record/13726112
Mycobacterium tuberculosis H37Rv Transcriptome or Gene expression
Creators: name: BGI
Publisher: name: CNGB
Year: 2012
Subjects: transcriptome
Multiisolate

description: We conducted a comprehensive RNA-Seq analyasis of transcriptome in Mycobacterium tuberculosis. By obtaining over 37 high-quality readds from total RNA including RNAs longer than 18 nucleotides.
Split orthogonal group: A guiding principle for sign-problem-free fermionic simulations
Creators: name: Wang, Lei
name: Liu, Ye-Hua
name: Iazzi, Mauro
name: Troyer, Matthias
name: Harcos, Gergely
Publisher: name: arXiv
Year: 2015
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Computational Physics (physics.comp-ph)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We present a guiding principle for designing fermionic Hamiltonians and quantum Monte Carlo (QMC) methods that are free from the infamous sign problem by exploiting the Lie groups and Lie algebras that appear naturally in the Monte Carlo weight of fermionic QMC simulations. Specifically, rigorous mathematical constraints on the determinants involving matrices that lie in the split orthogonal group provide a guideline for sign-free simulations of fermionic models on bipartite lattices. This guiding principle not only unifies the recent solutions of the sign problem based on the continuous-time quantum Monte Carlo methods and the Majorana representation, but also suggests new efficient algorithms to simulate physical systems that were previously prohibitive because of the sign problem.
description: See http://mathoverflow.net/questions/204460/how-to-prove-this-determinant-is-positive and https://terrytao.wordpress.com/2015/05/03/the-standard-branch-of-the-matrix-logarithm/ for discussions on mathematical aspect of the paper; v3 added footnotes [44, 59] and new supplemental material
Perinatal psychiatric episodes: a population-based study on treatment incidence and prevalence
Creators: name: Liu,
name: Meltzer-Brody,
name: Johannsen,
name: Howard,
name: Munk-Olsen,
name: di Florio,
name: Bergink,
name: Maegbaek,
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2016

description: Perinatal psychiatric episodes comprise various disorders and symptom severity, which are diagnosed and treated in multiple treatment settings. To date, no studies have quantified the incidence and prevalence of perinatal psychiatric episodes treated in primary and secondary care, which we aimed to do in the present study. We designed a descriptive prospective study and included information from Danish population registers to study first-time ever and recurrent psychiatric episodes during the perinatal period, including treatment at psychiatric facilities and general practitioners (GPs). This was done for all women who had records of one or more singleton births from 1998 until 2012. In total, we had information on 822 439 children born to 491 242 unique mothers. Results showed first-time psychiatric episodes treated at inpatient facilities were rare during pregnancy, but increased significantly shortly following childbirth (0.02 vs 0.25 per 1000 births). In comparison, first-time psychiatric episodes treated at outpatient facilities were more common, and showed little variation across pregnancy and postpartum. For every single birth resulting in postpartum episodes treated at inpatient psychiatric facilities, 2.5 births were followed by an episode treated at outpatient psychiatric facility and 12 births by GP-provided pharmacological treatment. We interpret our results the following way: treated severe and moderate psychiatric disorders have different risk patterns in relation to pregnancy and childbirth, which suggests differences in the underlying etiology. We further speculate varying treatment incidence and prevalence in pregnancy vs postpartum may indicate that the current Diagnostic and Statistical Manual of Mental Disorders-5 peripartum specifier not adequately describes at-risk periods across moderate and severe perinatal psychiatric episodes.
Transcriptome sequencing of Cleome hassleriana for different tissues
Creators: name: BGI
Publisher: name: CNGB
Year: 2012
Subjects: Transcriptome or Gene expression
Monoisolate

description: We have sequenced the whole genome of Cleome hassleriana by NGS [SRA accession number SRA058749] and build a reference sequence for this genome. In order to improve quality of gene models, a mix transcriptome sample extracted from the bud, leaf, petiole, stems and flowers of Cleome.Overall design: A mixed RNA pool extracted from the tissues of bud, leaf, petiole, stems and flower is sequenced for Cleome hassleriana.
Evidence for genetic heterogeneity between clinical subtypes of bipolar disorder
Creators: name: Di Florio,
name: Craddock,
name: Moran,
name: Perlis,
name: Ruderfer,
name: Lichtenstein,
name: Jones,
name: Chambert,
name: Rakofsky,
name: Charney,
name: Stahl,
name: Knowles,
name: Roussos,
name: Schalling,
name: Lee,
name: Landén,
name: Gordon-Smith,
name: Fochtmann,
name: Sobell,
name: Backlund,
name: Bromet,
name: Smoller,
name: Sklar,
name: Morley,
name: Hultman,
name: Buckley,
name: Green,
name: Forty,
name: Nicolini,
name: Belliveau,
name: Bergen,
name: Pato,
name: Fanous,
name: Marder,
name: Juréus,
name: Rapaport,
name: Jones,
name: Escamilla,
name: Medeiros,
name: McCarroll,
name: Pato,
name: Malaspina,
name: Purcell,
name: Perkins,
name: Lehrer,
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2017

description: We performed a genome-wide association study of 6447 bipolar disorder (BD) cases and 12 639 controls from the International Cohort Collection for Bipolar Disorder (ICCBD). Meta-analysis was performed with prior results from the Psychiatric Genomics Consortium Bipolar Disorder Working Group for a combined sample of 13 902 cases and 19 279 controls. We identified eight genome-wide significant, associated regions, including a novel associated region on chromosome 10 (rs10884920; P=3.28 × 10−8) that includes the brain-enriched cytoskeleton protein adducin 3 (ADD3), a non-coding RNA, and a neuropeptide-specific aminopeptidase P (XPNPEP1). Our large sample size allowed us to test the heritability and genetic correlation of BD subtypes and investigate their genetic overlap with schizophrenia and major depressive disorder. We found a significant difference in heritability of the two most common forms of BD (BD I SNP-h2=0.35; BD II SNP-h2=0.25; P=0.02). The genetic correlation between BD I and BD II was 0.78, whereas the genetic correlation was 0.97 when BD cohorts containing both types were compared. In addition, we demonstrated a significantly greater load of polygenic risk alleles for schizophrenia and BD in patients with BD I compared with patients with BD II, and a greater load of schizophrenia risk alleles in patients with the bipolar type of schizoaffective disorder compared with patients with either BD I or BD II. These results point to a partial difference in the genetic architecture of BD subtypes as currently defined.
Gonadal DNA methylomes of half-smooth tongue sole Cynoglossus semilaevis
Creators: name: BGI
Publisher: name: CNGB
Year: 2012
Subjects: Epigenomics
Multiisolate

description: Environmental sex determination (ESD) occurs in divergent, phylogenetically unrelated taxa, and in some species co-occurs with genetic sex determination (GSD) mechanisms. Although epigenetic regulation in response to environmental effects has long been proposed to be associated with ESD, a systemic analysis on epigenetic regulation of ESD is still lacking. Using half-smooth tongue sole (Cynoglossus semilaevis) as a model – a marine fish which has both ZW chromosomal GSD and temperature-dependent ESD – we investigated the role of DNA methylation in transition from GSD to ESD by comparing gonadal DNA methylomes of parental females, parental pseudo-males, F1 females, F1 pseudo-males and normal males.Overall design: To assess the gonadal DNA methylome patterns across different sexual types of tongue sole, we carried out BS-seq on bisulfite converted DNA extracted from adult gonads of parental females, parental pseudo-males, and F1 pseudo-males and females from a cross between a parental pseudo-male and a normal female. We also sampled normal male individuals as a control for the normal male DNA methylation pattern. For each of the five samples, two biological replicates were utilized, with each replicate being pooled by five fish. The phenotype and genotype of each selected fish was identified by the histological analysis and PCR validation using the W chromosome specific marker.DNA were isolated from five pooled gonads of the same replicate, then 5 μg DNA was used to do the bisulfite conversion and BS-seq. The bisulfite conversion of sample DNA was carried out using a modified NH4HSO3-based protocol (Hayatsu et al. 2006). The paired-end library construction and sequencing were carried out using Illumina HiSeq 2000, according to the manufacturer’s instructions (Illumina). We also mixed 25 ng cl857 Sam7 Lambda DNA in each sample to use as conversion quality control for each library.
Transcriptome sequencing of the halictid, Lasioglossum albipes
Creators: name: BGI
Publisher: name: CNGB
Year: 2012
Subjects: Transcriptome or Gene expression
Monoisolate

description: Deep sequencing of mRNA from the halictidPart of the Lasioglossum albipes WGS project (BioProject ID: PRJNA174755)Overall design: Analysis of ploy(A)+ RNA of different specimens:whole body from the halictid (Lasioglossum albipes)
Simulating the discrete-time quantum walk dynamics with simultaneous coin and shift operators
Creators: name: Moqadam, Jalil Khatibi
name: de Oliveira, Marcos Cesar
Publisher: name: arXiv
Year: 2015
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We implement the discrete-time quantum walk model using the continuous-time evolution of the Hamiltonian that includes both the shift and the coin generators. Based on the Trotter-Suzuki first-order approximation, we consider an optimization problem in which the Hellinger distance between the walker probability distributions resulted from the evolution of such Hamiltonian and the quantum walk dynamics is minimized. The phase space implementation of the quantum walk is considered where the walker state is encoded on the coherent state of a resonator and the coin on the two-level state of a qubit. In this approach, no mechanism for switching between the coin and the shift operators is included. We show the Hellinger distance is bounded for large number of time steps. The distance is small when we deviate from the standard quantum walk model, namely, when the walker is allowed to move in between the sites. In simulating the standard quantum walk model, the distance is large but bounded by $26\%$ for a relevant number of time steps. Even so, the system evolution shows the essential characteristics of the standard quantum walk dynamics, namely, the ballistic evolution of the probability distribution and the linear growth of the corresponding standard deviation. Moreover, the entanglement generated in this approach is approximately the same as the entanglement generated in the standard quantum walk dynamics. Finally, the system dynamics under the influence of the decoherence also shows the similar quantum-to-classical transition as in the standard quantum walk dynamics.
description: 7 pages, 3 figures
title: Cortical oscillatory changes associated with cognitive effort, value of effort, and incentive.
Creators: name: Byrne, Adam
Publisher: name: University of Liverpool Repository
Year: 2021

description: Cognitive effort is conceptualised as being deployed relative to the SV of its associated outcomes. The SV of incentives should therefore directly modulate effortful performance, as well as cortical processes associated with effortful engagement. However, the relationship between incentive value and modality, and effortful engagement remains unclear. The current thesis aimed to elaborate on the deployment of cognitive effort in response to incentives of differing magnitude and valence using preparatory ERD/ERS measures in tandem with discounting procedures. ERD/ERS in the alpha and beta bands was used to untangle cortical activation from inhibition during effortful engagement, as well as separating anticipatory attention from approach/avoidance motor responses under rewards of differing magnitudes and valence. Further, a COGED discounting task was used to estimate effort discounting rates, and to compare the SV of gains and losses. The results presented in the three experimental chapters showed that rewards lead to different modulations in pre-movement ERD/ERS depending on the task-structure used. Losses were more motivating than gains, but were associated with slower RTs, as well as deteriorations in alpha-band ERD. Further, individual SVs of effort were not significantly associated with changes in RT or ERD under differing incentives. The current thesis showed that cognitive effort is deployed through patterns of strategic cortical activation and inhibition, rather than a sustained increase in cortical activation. Further, the divergent effect of losses and gains was revealed to likely be due to attentional effects not the previously hypothesised approach/avoidance associations. Finally, the SV of effort does not appear to directly inform effortful engagement.
Revolutionizing Enterprise Resource Planning: Integrating Java and AI to Propel Web-Based ERP Systems into the Future
Creators: name: Bodemer, Oliver
Publisher: name: figshare
Year: 2023
Subjects: classificationCode: 359999
subject: Other commerce, management, tourism and services not elsewhere classified

description: In the dynamic landscape of Enterprise Resource Planning (ERP), the integration of Java and Artificial Intelligence (AI) has emerged as a pivotal strategy to enhance web-based ERP systems. This article delves into the synergistic relationship between Java’s robust web development capabilities and AI’s intelligent functionalities, aiming to revolutionize ERP systems by ensuring they are more adaptive, predictive, and intelligent. Through a succinct exploration of strategic integrations, case examples, and future prospects, this article aims to provide insights into how businesses can leverage the confluence of Java and AI to navigate through the complexities of digital transformation, thereby propelling their ERP systems into the future of intelligent business management.