cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 2: of A simulated night shift in the emergency room increases studentsâ   self-efficacy independent of role taking over during simulation
Creators: name: Stroben, Fabian
name: SchrĂśder, Therese
name: Dannenberg, Katja
name: Thomas, Anke
name: Exadaktylos, Aristomenis
name: Hautz, Wolf
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Science Policy
subject: Computational Biology

description: Technical details. Diagnosis and technical details for every case. (PDF 70 kb)
Miroculis (Miroculis) fittkaui Savage & Peters 1983
Creators: name: Rodrigues, Jackson A. O.
name: Nascimento, Stênio R. S.
name: Raimundi, Erikcsen A.
name: Lima, Lucas R. C.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Ephemeroptera
Leptophlebiidae
Miroculis
Miroculis fittkaui

description: Miroculis (Miroculis) fittkaui Savage & Peters, 1983
Miroculis (Miroculis) fittkaui Savage & Peters, 1983: 529 (male and female imago); Savage, 1983: 130; Savage, 1987: 103 (male); Salles et al. 2010: 306; Salles & Lima, 2011: 58; Lima et al. 2012: 311; Massariol, Soares & Salles, 2014: 370; Campos et al. 2016: 310; Gama Neto et al. 2018: 36; Costa et al. 2018: 4.
Distribution. Suriname and Venezuela. Brazil: Bahia (Campos et al. 2016), Espírito Santo (Salles et al. 2010), Pará (Savage & Peters 1983), Pernambuco (Lima et al. 2012) and Roraima (Gama Neto et al. 2018).
Material examined. Two Ô imagos Brazil, Piauí State, Batalha municipality, Longá River, Pedra Dela, S3°54′51.7″, W42º06′37.8″, 68m, 10.xii.2015, Lima, L. R. C. col. (CEHJ). One Ô imago Brazil, Piauí State, Alto Longá municipality, Cachoeira da Campeira, S5°11′45.1′′, W42°15′33.9′′, 177m, 04.iii.2015, Lima, L. R. C. col. (CEHJ). One Ô imago Brazil, Piauí State, Piripiri municipality, Cachoeira do Bota-fora, S4°12′51.1′′, W41°40′01.7′′, 162m, 14.x.2017, Lima, L. R. C. col. (CEHJ); same data except Five Ô imagos, 10.ii.2018. Seven Ô imagos Brazil, Piauí State, Barras municipality, Longá River, near bridge at PI-110, S4°12′08.4′′, W42°14′21.2′′, 74m, 18.iv.2017, Lima, L. R. C col. (CEHJ). One Ô imago Brazil, Piauí State, Piripiri municipality, Cachoeira do Botafora, S4°12′51.1′′, W41°40′01.7′′, 162m, 14.x.2017, Lima, L. R. C. col. (CEHJ). One Ô imago Brazil, Piauí State, Piripiri municipality, Cachoeira das Tuncas, Povoado Corrente, S04⁰25 ′28.5′′, W41⁰38 ′35.2′′, 269m, 29.vi.2019, Lima, L. R. C. col. (CEHJ). Two Ô imagos Brazil, Piauí State, Pedro II municipality, Riacho Samambaia, acima da Cachoeira do Urubu Rei, S04°19′40.6′′, W41°27′46.4′′, 501m, 18.vi.2022, Lima, L. R.C col. (CEHJ).
Comments. The specimens examined fit well with the descriptions given by Savage & Peters (1983) and Savage (1987). Adults and nymphs were collected in stream segments with altitude ranging from 160 to 500 m a.s.l. and with weak current, associated with substrate with leaves deposited on the bottom, in patches of dense and humid forest. The emergence of some adults was observed at 15:00. With this study, M. fittkaui is reported for the first time from Piauí State.
description: Published as part of Rodrigues, Jackson A. O., Nascimento, Stênio R. S., Raimundi, Erikcsen A. & Lima, Lucas R. C., 2023, New species and new records of Miroculis Edmunds, 1963 (Ephemeroptera: Leptophlebiidae) from Chacoan Domain in northeastern Brazil, pp. 27-47 in Zootaxa 5230 (1) on page 45, DOI: 10.11646/zootaxa.5230.1.2, http://zenodo.org/record/7550447
IGSN International Generic Sample Numbers - uniquely identifying your samples
Creators: name: Elger, Kirsten
Publisher: name: Zenodo
Year: 2023
Subjects: persistent identifier
FAIR
IGSN
International Generic Sample Number
physical objects
specimen

description: These slides were presented during the virtual annual meeting of the RDA Germany, the German branch of the Research Date Alliance on 16 February 2023 during the session "Persistent Identifier für FAIRe Forschungsdaten" (persistent identifier for FAIR Data). It represents an introduction to the International Generic Sample Number (IGSN), the persistent identifier for physical objects and specimen. It begins with the original ratioinale for the development of IGSN, its implementation, actual activities and its future perspective in the framework of the IGSN DataCite strategic partnership.
Additional file 1: of A simulated night shift in the emergency room increases studentsâ   self-efficacy independent of role taking over during simulation
Creators: name: Stroben, Fabian
name: SchrĂśder, Therese
name: Dannenberg, Katja
name: Thomas, Anke
name: Exadaktylos, Aristomenis
name: Hautz, Wolf
Publisher: name: Figshare
Year: 2016
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Science Policy
subject: Computational Biology

description: Case descriptions (used Guidelines indicated as references). (PDF 87 kb)
title: Ultra-short laser surface properties optimization of biocompatibility characteristics of 3D poly-ε-caprolactone and hydroxyapatite composite scaffolds
Creators: name: Daskalova, Albena
name: Filipov, Emil
name: Angelova, Liliya
name: Stefanov, Radostin
name: Tatchev, Dragomir
name: Avdeev, Georgi
name: Sotelo, Lamborghini
name: Christiansen, Silke H.
name: Sarau, George
name: Leuchs, Gerd
name: Iordanova, Ekaterina
name: Buchvarov, Ivan
Publisher: name: Freie Universität Berlin
Year: 2021
Subjects: subject: ultra-short laser processing
subject: bone tissue engineering
subject: surface patterns;
subject: biodegradable polymers
subject: antibacterial structuring
classificationCode: 530
subject: Physik

description: The use of laser processing for the creation of diverse morphological patterns onto the surface of polymer scaffolds represents a method for overcoming bacterial biofilm formation and inducing enhanced cellular dynamics. We have investigated the influence of ultra-short laser parameters on 3D-printed poly-ε-caprolactone (PCL) and poly-ε-caprolactone/hydroxyapatite (PCL/HA) scaffolds with the aim of creating submicron geometrical features to improve the matrix biocompatibility properties. Specifically, the present research was focused on monitoring the effect of the laser fluence (F) and the number of applied pulses (N) on the morphological, chemical and mechanical properties of the scaffolds. SEM analysis revealed that the femtosecond laser treatment of the scaffolds led to the formation of two distinct surface geometrical patterns, microchannels and single microprotrusions, without triggering collateral damage to the surrounding zones. We found that the microchannel structures favor the hydrophilicity properties. As demonstrated by the computer tomography results, surface roughness of the modified zones increases compared to the non-modified surface, without influencing the mechanical stability of the 3D matrices. The X-ray diffraction analysis confirmed that the laser structuring of the matrices did not lead to a change in the semi-crystalline phase of the PCL. The combinations of two types of geometrical designs—wood pile and snowflake—with laser-induced morphologies in the form of channels and columns are considered for optimizing the conditions for establishing an ideal scaffold, namely, precise dimensional form, mechanical stability, improved cytocompatibility and antibacterial behavior.
Additional file 2: of Prediction of non-muscle invasive bladder cancer outcomes assessed by innovative multimarker prognostic models
Creators: name: E. López De Maturana
name: A. Picornell
name: A. Masson-Lecomte
name: M. Kogevinas
name: M. Márquez
name: A. Carrato
name: A. Tardón
name: J. Lloreta
name: M. García-Closas
name: D. Silverman
name: N. Rothman
name: S. Chanock
name: F. Real
name: M. Goddard
name: N. Malats
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer

description: Supplemental Methods. Model including non-genetic variables. (DOC 55 kb)
title: The undiscovered biosynthetic potential of the Greenland Ice Sheet microbiome
Creators: name: Jaarsma, Ate H.
name: Zervas, Athanasios
name: Sipes, Katie
name: Campuzano Jiménez, Francisco
name: Smith, Andrea Claire
name: Svendsen, Liessel Victoria
name: Thøgersen, Mariane S.
name: Stougaard, Peter
name: Benning, Liane G.
name: Tranter, Martyn
Publisher: name: Freie Universität Berlin
Year: 2023
Subjects: subject: supraglacial habitats
subject: extremophiles
subject: metagenomic sequencing
subject: biosynthetic gene clusters
subject: genome mining
subject: bioprospecting
classificationCode: 570
subject: Biowissenschaften; Biologie

description: The Greenland Ice Sheet is a biome which is mainly microbially driven. Several different niches can be found within the glacial biome for those microbes able to withstand the harsh conditions, e.g., low temperatures, low nutrient conditions, high UV radiation in summer, and contrasting long and dark winters. Eukaryotic algae can form blooms during the summer on the ice surface, interacting with communities of bacteria, fungi, and viruses. Cryoconite holes and snow are also habitats with their own microbial community. Nevertheless, the microbiome of supraglacial habitats remains poorly studied, leading to a lack of representative genomes from these environments. Under-investigated extremophiles, like those living on the Greenland Ice Sheet, may provide an untapped reservoir of chemical diversity that is yet to be discovered. In this study, an inventory of the biosynthetic potential of these organisms is made, through cataloging the presence of biosynthetic gene clusters in their genomes. There were 133 high-quality metagenome-assembled genomes (MAGs) and 28 whole genomes of bacteria obtained from samples of the ice sheet surface, cryoconite, biofilm, and snow using culturing-dependent and -independent approaches. AntiSMASH and BiG-SCAPE were used to mine these genomes and subsequently analyze the resulting predicted gene clusters. Extensive sets of predicted Biosynthetic Gene Clusters (BGCs) were collected from the genome collection, with limited overlap between isolates and MAGs. Additionally, little overlap was found in the biosynthetic potential among different environments, suggesting specialization of organisms in specific habitats. The median number of BGCs per genome was significantly higher for the isolates compared to the MAGs. The most talented producers were found among Proteobacteria. We found evidence for the capacity of these microbes to produce antimicrobials, carotenoid pigments, siderophores, and osmoprotectants, indicating potential survival mechanisms to cope with extreme conditions. The majority of identified BGCs, including those in the most prevalent gene cluster families, have unknown functions, presenting a substantial potential for bioprospecting. This study underscores the diverse biosynthetic potential in Greenland Ice Sheet genomes, revealing insights into survival strategies and highlighting the need for further exploration and characterization of these untapped resources.
Additional file 1 of An evaluation of nutritional impact symptoms and their association with reduced dietary intake in patients with solid tumors at tertiary care hospitals: a multicenter, cross-sectional study from palestine
Creators: name: Shakhshir, Muna H.
name: Salameh, Husam T.
name: Amer, Riad
name: Zyoud, Sa’ed H.
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Supplementary Material 1
Adapting an Unadaptable ASR System
Creators: name: Ma, R
name: Qian, M
name: Gales, MJF
name: Knill, KM
Publisher: name: ISCA
Year: 2023

description: As speech recognition model sizes and training data requirements grow, it is increasingly common for systems to only be available via APIs from online service providers rather than having direct access to models themselves. In this scenario it is challenging to adapt systems to a specific target domain. To address this problem we consider the recently released Open AI Whisper ASR as an example of a large-scale ASR system as to assess adaptation methods. An error correction based approach is adopted, as this does not require access to the model, but can be trained from either 1-best or N-best outputs that are normally available via the ASR API. LibriSpeech is used as the primary target domain for adaptation. The generalization ability of the system in two distinct dimensions are then evaluated. First, whether the form of correction model is portable to other speech recognition domains, and secondly whether it can be used for ASR models having a different architecture.
title: In Vitro Analysis of Human Cartilage Infiltrated by Hydrogels and Hydrogel-Encapsulated Chondrocytes
Creators: name: Köck, Hannah
name: Striegl, Birgit
name: Kraus, Annalena
name: Zborilova, Magdalena
name: Christiansen, Silke H.
name: Schäfer, Nicole
name: Grässel, Susanne
name: Hornberger, Helga
Publisher: name: Freie Universität Berlin
Year: 2023
Subjects: subject: osteoarthritis
subject: human articular cartilage
subject: chondrocytes
subject: infiltration
subject: zwitterionic monomers
subject: hydrogels
classificationCode: 530
subject: Physik

description: Osteoarthritis (OA) is a degenerative joint disease causing loss of articular cartilage and structural damage in all joint tissues. Given the limited regenerative capacity of articular cartilage, methods to support the native structural properties of articular cartilage are highly anticipated. The aim of this study was to infiltrate zwitterionic monomer solutions into human OA-cartilage explants to replace lost proteoglycans. The study included polymerization and deposition of methacryloyloxyethyl-phosphorylcholine- and a novel sulfobetaine-methacrylate-based monomer solution within ex vivo human OA-cartilage explants and the encapsulation of isolated chondrocytes within hydrogels and the corresponding effects on chondrocyte viability. The results demonstrated that zwitterionic cartilage–hydrogel networks are formed by infiltration. In general, cytotoxic effects of the monomer solutions were observed, as was a time-dependent infiltration behavior into the tissue accompanied by increasing cell death and penetration depth. The successful deposition of zwitterionic hydrogels within OA cartilage identifies the infiltration method as a potential future therapeutic option for the repair/replacement of OA-cartilage extracellular suprastructure. Due to the toxic effects of the monomer solutions, the focus should be on sealing the OA-cartilage surface, instead of complete infiltration. An alternative treatment option for focal cartilage defects could be the usage of monomer solutions, especially the novel generated sulfobetaine-methacrylate-based monomer solution, as bionic for cell-based 3D bioprintable hydrogels.
title: Characterizing Intraindividual Podocyte Morphology In Vitro with Different Innovative Microscopic and Spectroscopic Techniques
Creators: name: Kraus, Annalena
name: Rose, Victoria
name: Krüger, René
name: Sarau, George
name: Kling, Lasse
name: Schiffer, Mario
name: Christiansen, Silke H.
name: Müller-Deile, Janina
Publisher: name: Freie Universität Berlin
Year: 2023
Subjects: subject: single-cell RNA sequencing
subject: podocytes; foot processes
subject: filopodia
subject: light microscopy
subject: Raman spectroscopy
subject: scanning electron microscopy
subject: atomic force microscopy
subject: scanning ion-conductance microscopy
subject: nanoGPS tracking
classificationCode: 530
subject: Physik

description: Podocytes are critical components of the glomerular filtration barrier, sitting on the outside of the glomerular basement membrane. Primary and secondary foot processes are characteristic for podocytes, but cell processes that develop in culture were not studied much in the past. Moreover, protocols for diverse visualization methods mostly can only be used for one technique, due to differences in fixation, drying and handling. However, we detected by single-cell RNA sequencing (scRNAseq) analysis that cells reveal high variability in genes involved in cell type-specific morphology, even within one cell culture dish, highlighting the need for a compatible protocol that allows measuring the same cell with different methods. Here, we developed a new serial and correlative approach by using a combination of a wide variety of microscopic and spectroscopic techniques in the same cell for a better understanding of podocyte morphology. In detail, the protocol allowed for the sequential analysis of identical cells with light microscopy (LM), Raman spectroscopy, scanning electron microscopy (SEM) and atomic force microscopy (AFM). Skipping the fixation and drying process, the protocol was also compatible with scanning ion-conductance microscopy (SICM), allowing the determination of podocyte surface topography of nanometer-range in living cells. With the help of nanoGPS Oxyo®, tracking concordant regions of interest of untreated podocytes and podocytes stressed with TGF-β were analyzed with LM, SEM, Raman spectroscopy, AFM and SICM, and revealed significant morphological alterations, including retraction of podocyte process, changes in cell surface morphology and loss of cell-cell contacts, as well as variations in lipid and protein content in TGF-β treated cells. The combination of these consecutive techniques on the same cells provides a comprehensive understanding of podocyte morphology. Additionally, the results can also be used to train automated intelligence networks to predict various outcomes related to podocyte injury in the future.
Influence of Magnetic Field and Temperature on Half Width at Half Maximum of Multi-photon Absorption Spectrum in Two-dimensional Graphene
Creators: name: Ba, Cao Thi Vi
name: Bau, Nguyen Quang
name: Nam, Nguyen Dinh
name: Tran, Anh-Tuan
name: Huong, Nguyen Thu
Publisher: name: arXiv
Year: 2024
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We use the Profile numerical method to calculate the spectral line width, or half width at half maximum (HWHM) of the absorption peaks of multi-photon absorption processes in a two-dimensional graphene system (2DGS) according to important external parameters such as magnetic field and temperature in the presence of strong electromagnetic waves (SEMW). The appearance of these absorption peaks is theoretically obtained from magneto-phonon resonance conditions within the framework of the quantum kinetic equation. The results take into account both scattering mechanisms: electron-optical phonon and electron-acoustic phonon. Under the influence of the magnetic field, according to the increasing photon energy of the SEMW, the graph showing the dependence of the multi-photon nonlinear absorption coefficient on photon energy has the form of absorption spectrum lines following magneto-phonon resonance conditions. When increasing the value of the external magnetic field and the intensity of the SEMW, the intensity of the resonance peaks increases. In addition, the HWHM W of the resonance peaks of multi-photon absorption processes increases with increasing magnetic field $\mathrm{B}$ according to the square root law $\mathrm{W} = κ\sqrt{\mathrm{B}}$ but is independent of temperature. The value of the HWHM of the one-photon absorption process is larger than the value of the HWHM of the multi-photon absorption processes. The calculations of the HWHM of the one-photon absorption process in this paper are consistent with previous experimental observations and theoretical calculations. Thus, our calculations of the HWHM of multi-photon absorption processes can serve as reliable predictions for future experiments.
FAIR WISH D3 - Assisting and Assessing User application of the FAIR SAMPLES Template
Creators: name: Wieczorek, Mareike
name: Heim, Birgit
name: Brauser, Alexander
name: Elger, Kirsten
name: Baldewein, Linda
Publisher: name: Zenodo
Year: 2022
Subjects: FAIR Samples
IGSN
sample description
video
metadata template
HMC
Helmholtz Metadata Collaboration
FAIR WISH

description: This document describes the deliverable D3 “Assisting and Assessing User application of the FAIR SAMPLES Template” of the project FAIR Workflows to establish IGSN for Samples in the Helmholtz Association (FAIR WISH) funded by the Helmholtz Metadata Collaboration (HMC). Deliverable D3 is part of work package 3 “Domain-specific metadata for terrestrial and aquatic Geo-Bio samples (vegetation, sediment, water, rocks)”.

In D2 we provided an exemplary standardised, flexible and customisable metadata template for Geo-Bio samples (in short ‘FAIR SAMPLES Template’) for batch uploading sample-metadata to the IGSN server.

D3 includes a video tutorial with complementary visual and audio content on how to use the ‘FAIR SAMPLES Template’. D3 also contains a Usability questionnaire for receiving feedback on the application of the template. The feedback based on these Usability questionnaires and more future activities such as one-to-one interviews will form the main feedback for evaluating the usability of the FAIR SAMPLES Template and improve its applicability.

FAIR WISH is a joint project between the Helmholtz Centres GFZ, AWI and Hereon. It was was funded 2022-2023 by the Initiative and Networking Fund of the Helmholtz Association within the HMC Project Cohorte 2020 of the Helmholtz Metadata Collaboration Platform HMC.
CHET TILI DARSLARIDA O'QUVCHILARDA IJTIMOIYLASHUV KO'NIKMASINI SHAKLLANTIRISHNING AHAMIYATI
Creators: name: Zaylobidinova Munira G'ulomovna
name: Shermuhammadov Bahodirjon Shermuhammadovich
Publisher: name: Academic Scientific Research Group
Year: 2024

description: Bugungi kunda chet tillari darslarini samarali tashkillash uchun ijtimoiylashuv ya’ni hayotiy ko‘nikmalarini qo‘llab dars o‘tish muhim ahamiyat kasb etmoqda. Ijtimoiylashuv jarayoni o‘quvchilar orasida hamkorlikni shakllantirish, o‘zaro muloqot va fikr almashtirish imkoniyatlarini oshirish, bir biriga yordam berish va bir maqsad sari harakat qilishni o‘rgatadi. Quyidagi maqolada bunday yondashuvni o‘quvchilarning mustaqil fikrlash ko‘nikmalarini rivojlantirishiga, ularga til o‘rganish jarayonida yangi bilim-ko‘nikmalarini kashf qilish afzalliklari haqida fikr yuritiladi.
title: Thinking different as an act of resistance: Reconceptualizing the German protests in the COVID-19 pandemic as an emergent counter-knowledge order
Creators: name: Primig, Florian
Publisher: name: Freie Universität Berlin
Year: 2024
Subjects: subject: Counter-knowledge order
subject: COVID-19
subject: critical discourse analysis
subject: knowledge order
subject: protest
subject: Telegram
classificationCode: 070
subject: Publizistische Medien, Journalismus, Verlagswesen

description: Massive anti-government protests erupted during the COVID-19 pandemic in Germany. The crisis activated a potential for resistance that has been simmering under the impositions of late-modern knowledge society. Made salient by the pandemic conditions of sudden extreme reliance on scientific (non) knowledge, the corona protestors activated this potential for resistance and constructed their own counter-knowledge order bound by shared resentment of and distrust in the established order and facilitated by digital platforms. Utilising social network analysis and structural topic modeling for digital critical discourse analysis, in this paper I explore how the corona protest counter-knowledge order is constructed with a particular focus on its contexts, roles, and hierarchies. I find that far-right and conspiracy imaginations are used to level out hierarchies and detach epistemic roles from their contexts to reinstate a superior self into interpretative power. The counter-knowledge order’s inherent construction of unwarranted omnipotence points to a more fundamental resistance to the established normative orders of our society that should be addressed more effectively if we want to be prepared for future crises and not lose common ground for making sense of them.
Bradley E. Ensor, The Not Very Patrilocal European Neolithic. Strontium, aDNA, and Archaeological Kinship Analyses
Creators: name: Bánffy, Eszter
Publisher: name: Germania : Anzeiger der Römisch-Germanischen Kommission des Deutschen Archäologischen Instituts
Year: 2024

description: Rezension zu: Bradley E. Ensor, The Not Very Patrilocal European Neolithic. Strontium, aDNA, and Archaeological Kinship Analyses. Archaeopress Archaeology, Oxford 2021. £ 38.00. ISBN 978-1-78969-980-7 (Paperback). £ 16.00. ISBN 978-1-78969-981-4 (E-Book). doi: https://doi.org/10.2307/j.ctv209xn0x. 252 Seiten mit 24 Abbildungen und 18 Tabellen.
description: Germania : Anzeiger der Römisch-Germanischen Kommission des Deutschen Archäologischen Instituts, Bd. 101 2023(2024)
title: Mitotic activity: A systematic literature review of the assessment methodology and prognostic value in canine tumors
Creators: name: Bertram, Christof A.
name: Donovan, Taryn A.
name: Bartel, Alexander
Publisher: name: Freie Universität Berlin
Year: 2024
Subjects: subject: dog
subject: mitosis
subject: mitotic count
subject: mitotic index
subject: neoplasia
subject: outcome
subject: survival
subject: prognosis
classificationCode: 630
subject: Landwirtschaft und verwandte Bereiche

description: One of the most relevant prognostic indices for tumors is cellular proliferation, which is most commonly measured by the mitotic activity in routine tumor sections. The goal of this systematic review was to analyze the methods and prognostic relevance of histologically measuring mitotic activity that have been reported for canine tumors in the literature. A total of 137 articles that correlated the mitotic activity in canine tumors with patient outcome were identified through a systematic (PubMed and Scopus) and nonsystematic (Google Scholar) literature search and eligibility screening process. Mitotic activity methods encompassed the mitotic count (MC, number of mitotic figures per tumor area) in 126 studies, presumably the MC (method not specified) in 6 studies, and the mitotic index (MI, number of mitotic figures per number of tumor cells) in 5 studies. A particularly high risk of bias was identified based on the available details of the MC methods and statistical analyses, which often did not quantify the prognostic discriminative ability of the MC and only reported P values. A significant association of the MC with survival was found in 72 of 109 (66%) studies. However, survival was evaluated by at least 3 studies in only 7 tumor types/groups, of which a prognostic relevance is apparent for mast cell tumors of the skin, cutaneous melanoma, and soft tissue tumor of the skin and subcutis. None of the studies using the MI found a prognostic relevance. This review highlights the need for more studies with standardized methods and appropriate analysis of the discriminative ability to prove the prognostic value of the MC and MI in various tumor types. Future studies are needed to evaluate the influence of the performance of individual pathologists on the appropriateness of prognostic thresholds and investigate methods to improve interobserver reproducibility.
Quantum theory of the effect of increasing weak electromagnetic wave by a strong laser radiation in 2D Graphene
Creators: name: Tran, Anh-Tuan
name: Nama, Nguyen Dinh
name: Nhan, Nguyen Thi Thanh
name: Bau, Nguyen Quang
Publisher: name: arXiv
Year: 2024
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Analytic expressions for the absorption coefficient (AC) of a weak electromagnetic wave (EMW) in 2D Graphene under influence of strong laser radiation are calculated using the quantum kinetic equation (QKE) in the case of electron-optical phonon scattering in both the absence and presence of a magnetic field perpendicular to the graphene sheet. The dependence of the AC on the intensity $E_{02}$ and the frequency $Ω_2$ of a weak EMW, on the intensity $E_{01}$ and the frequency $Ω_1$ of a strong laser radiation, on the temperature T of the system is obtained. These results are investigated from low temperature to high temperature. These results are obtained from the QKE method, which broke the limit of the Boltzmann kinetic equations (only investigated in the high-temperature domain). Besides, the numerical results show that the AC of a weak EMW in 2D Graphene can have negative values. This demonstrates the possibility of increasing weak EMW by strong laser radiation in 2D Graphene. This is different from a similar problem in bulk semiconductors and the case without strong laser radiation. In the case of the presence of an external magnetic field, the numerical calculation results also show the appearance of the peak spectral lines that obey the magneto-phonon resonance conditions. The appearance of these resonance peaks provides a model illustrating the dependence of the Half-Width at Half Maximum (HWHM) on the external magnetic field. This is an important criterion for the fabrication of graphene-related electronic components and orientation for future experiments.
title: How journalism adapted the Internet in Germany: Results of six newsroom surveys (1997–2014)
Creators: name: Neuberger, Christoph
Publisher: name: Freie Universität Berlin
Year: 2024
Subjects: subject: Digital journalism
subject: newsroom survey
subject: social media
subject: rules
subject: tasks
subject: skills
classificationCode: 070
subject: Publizistische Medien, Journalismus, Verlagswesen

description: Based on six newsroom surveys, this article analyzes the history of digital German journalism. The surveys cover a period of 17 years (1997–2014). Periodizing the history of digital journalism into three phases, this article considers the interplay between journalism and journalism research. The results show how journalistic digital media define their role in the relationships between old media and the Internet, digital media and other outlets, and digital media and their audiences. Furthermore, the results substantiate how digital editorial staff define their journalistic identities regarding tasks, rules, and skills. During the first period (surveys conducted in 1997 and 2000), the view from old mass media to the Internet dominated, also in scholarship where the mass media paradigm was extended to the Internet. The second period (surveys conducted in 2006 and 2007) was characterized by clarifying the relationships between journalism and newly emerged outlets. These studies focused on how participative formats (such as Wikipedia and blogs) and search engines could be used for journalistic purposes without compromising quality. These new outlets were not regarded then as much of a threat. This attitude did not change during the third period (surveys conducted in 2010 and 2014). In this phase, too, the studies focused on how editorial staff utilized the ever-increasing number of social media. The six surveys’ different research interests reveal that the reviewed journalism research primarily addressed changing demands in journalistic practice. Therefore, exogenous factors (“the sector”) had a greater impact than endogenous factors (the “scholarship”) on research interests.
Ordinal spaces
Creators: name: Keller, Karsten
name: Petrov, Evgeniy
Publisher: name: arXiv
Year: 2024
Subjects: subject: General Topology (math.GN)
subject: FOS: Mathematics
subject: Primary 54E99, Secondary 54E25, 54E35

description: Ordinal data analysis is an interesting direction in machine learning. It mainly deals with data for which only the relationships `$<$', `$=$', `$>$' between pairs of points are known. We do an attempt of formalizing structures behind ordinal data analysis by introducing the notion of ordinal spaces on the base of a strict axiomatic approach. For these spaces we study general properties as isomorphism conditions, connections with metric spaces, embeddability in Euclidean spaces, topological properties etc.
description: 28 pages, 3 figures
Phytoptidae Murray
Creators: name: Chetverikov, Philipp E.
name: Beaulieu, Frédéric
name: Cvrković, Tatjana
name: Vidović, Biljana
name: Petanović, Radmila U.
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Prostigmata
Phytoptidae

description: Family: Phytoptidae Murray
Diagnosis. Eriophyoid mites with 1–5 setae on the prodorsal shield, including unpaired or paired vi and/or paired ve setae; usually tibia I solenidion (φ) and opisthosomal subdorsal seta (c1); female genital coverflap usually without ridges; spermathecal tubes short to very elongate (Amrine et al. 2003).
description: Published as part of Chetverikov, Philipp E., Beaulieu, Frédéric, Cvrković, Tatjana, Vidović, Biljana & Petanović, Radmila U., 2012, Oziella sibirica (Acari: Eriophyoidea: Phytoptidae), a new eriophyoid mite species described using confocal microscopy, COI barcoding and 3 D surface reconstruction, pp. 41-60 in Zootaxa 3560 on page 44, DOI: 10.5281/zenodo.213624
title: Introducing Academic Freedom in Constitutions: a new global dataset, 1789–2022
Creators: name: Spannagel, Janika
Publisher: name: Freie Universität Berlin
Year: 2024
Subjects: subject: Academic freedom
subject: Freedom of science
subject: University autonomy
subject: Constitutions
subject: Global dataset
subject: Diffusion
classificationCode: 320
subject: Politikwissenschaft

description: The Academic Freedom in Constitutions dataset is a new resource that empirically maps constitutional guarantees of the freedom of science, of academic freedom, and of university autonomy in 203 countries, spanning the period from 1789 to 2022. While the topic of academic freedom has been gaining increasing prominence in political and legal research over the past decade, it is so far largely absent from the comparative constitutional literature. However, its global codification process holds interesting insights for the study of international norm diffusion, both with respect to its functional connection to higher education development and its distinct constitutional genealogies. The paper first introduces the dataset and explains how it is different from previous coding efforts, before discussing its significance and potential contributions to the comparative legal literature, political science, and other research.
title: Automated diagnosis of 7 canine skin tumors using machine learning on H&E-stained whole slide images
Creators: name: Fragoso-Garcia, Marco
name: Wilm, Frauke
name: Bertram, Christof A.
name: Merz, Sophie
name: Schmidt, Anja
name: Donovan, Taryn
name: Bartel, Alexander
name: Diehl, Laura
name: Puget, Chloe
name: Klopfleisch, Robert
Publisher: name: Freie Universität Berlin
Year: 2023
Subjects: subject: computer-aided diagnosis
subject: computational pathology
subject: digital pathology
subject: dog
subject: machine learning
subject: skin
subject: veterinary oncology
classificationCode: 630
subject: Landwirtschaft und verwandte Bereiche

description: Microscopic evaluation of hematoxylin and eosin-stained slides is still the diagnostic gold standard for a variety of diseases, including neoplasms. Nevertheless, intra- and interrater variability are well documented among pathologists. So far, computer assistance via automated image analysis has shown potential to support pathologists in improving accuracy and reproducibility of quantitative tasks. In this proof of principle study, we describe a machine-learning-based algorithm for the automated diagnosis of 7 of the most common canine skin tumors: trichoblastoma, squamous cell carcinoma, peripheral nerve sheath tumor, melanoma, histiocytoma, mast cell tumor, and plasmacytoma. We selected, digitized, and annotated 350 hematoxylin and eosin-stained slides (50 per tumor type) to create a database divided into training, n = 245 whole-slide images (WSIs), validation (n = 35 WSIs), and test sets (n = 70 WSIs). Full annotations included the 7 tumor classes and 6 normal skin structures. The data set was used to train a convolutional neural network (CNN) for the automatic segmentation of tumor and nontumor classes. Subsequently, the detected tumor regions were classified patch-wise into 1 of the 7 tumor classes. A majority of patches-approach led to a tumor classification accuracy of the network on the slide-level of 95% (133/140 WSIs), with a patch-level precision of 85%. The same 140 WSIs were provided to 6 experienced pathologists for diagnosis, who achieved a similar slide-level accuracy of 98% (137/140 correct majority votes). Our results highlight the feasibility of artificial intelligence-based methods as a support tool in diagnostic oncologic pathology with future applications in other species and tumor types.
Phytoptinae
Creators: name: Chetverikov, Philipp E.
name: Beaulieu, Frédéric
name: Cvrković, Tatjana
name: Vidović, Biljana
name: Petanović, Radmila U.
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Prostigmata
Phytoptidae

description: Subfamily: Phytoptinae Murray
Diagnosis. Phytoptids with opisthosoma vermiform and with annuli dorsoventrally subequal in size and number; two pairs of prodorsal shield setae (anterior ve and posterior sc); tibial solenidion φ and opisthosomal setae c1 usually present; spermathecal tubes relatively short.
description: Published as part of Chetverikov, Philipp E., Beaulieu, Frédéric, Cvrković, Tatjana, Vidović, Biljana & Petanović, Radmila U., 2012, Oziella sibirica (Acari: Eriophyoidea: Phytoptidae), a new eriophyoid mite species described using confocal microscopy, COI barcoding and 3 D surface reconstruction, pp. 41-60 in Zootaxa 3560 on page 44, DOI: 10.5281/zenodo.213624
Additional file 2: of Workplace health promotion for older workers: a systematic literature review
Creators: name: Poscia, Andrea
name: Moscato, Umberto
name: Milia, Daniele La
name: Milovanovic, Sonja
name: Stojanovic, Jovana
name: Borghini, Alice
name: Collamati, Agnese
name: Ricciardi, Walter
name: Magnavita, Nicola
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Science Policy

description: PRISMA statement for reporting systematic reviews. (DOCX 30.4 KB)
Additional file 1: Figures S1â  S17. of An integrated genetic-epigenetic analysis of schizophrenia: evidence for co-localization of genetic associations and differential DNA methylation
Creators: name: Hannon, Eilis
name: Dempster, Emma
name: Viana, Joana
name: Burrage, Joe
name: Smith, Adam
name: Macdonald, Ruby
name: Clair, David St
name: Mustard, Colette
name: Gerome Breen
name: Therman, Sebastian
name: Kaprio, Jaakko
name: Timothea Toulopoulou
name: Hilleke Pol
name: Bohlken, Marc
name: Kahn, Rene
name: Nenadic, Igor
name: Hultman, Christina
name: Murray, Robin
name: Collier, David
name: Bass, Nick
name: Gurling, Hugh
name: McQuillin, Andrew
name: Schalkwyk, Leonard
name: Mill, Jonathan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: (PDF 1469 kb)
Oziella Amrine, Stasny and Flechtmann 2003
Creators: name: Chetverikov, Philipp E.
name: Beaulieu, Frédéric
name: Cvrković, Tatjana
name: Vidović, Biljana
name: Petanović, Radmila U.
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Prostigmata
Phytoptidae
Oziella

description: Genus: Oziella Amrine, Stasny and Flechtmann 2003
Diagnosis. Phytoptine mites with fused femur and genu on legs I–II, and bearing tibial φ and opisthosomal seta c1.
description: Published as part of Chetverikov, Philipp E., Beaulieu, Frédéric, Cvrković, Tatjana, Vidović, Biljana & Petanović, Radmila U., 2012, Oziella sibirica (Acari: Eriophyoidea: Phytoptidae), a new eriophyoid mite species described using confocal microscopy, COI barcoding and 3 D surface reconstruction, pp. 41-60 in Zootaxa 3560 on page 44, DOI: 10.5281/zenodo.213624
Platydracus (Platydracus) meridionalis
Creators: name: Fernández, José Manuel Diéguez
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Platydracus
Platydracus meridionalis

description: Platydracus (Platydracus) meridionalis (Rosenhauer 1847)   Especie euroturánica, citada en la Península Ibérica de Madrid, Valencia y Barcelona (Gamarra & Outerelo 2008) y de Tortosa en Tarragona (Coiffait 1974). Hemos estudiado nuevo material de la provincia de Tarragona.
 Tamaño de entre 12 y 22 mm. de longitud, los ejemplares estudiados presentan una coloración negra, élitros rojizos y el edeago como en la fig. 89 C-D de Coiffait (1974). Se encuentra en lugares abiertos y secos, bajo piedras, excrementos y en pequeños cadáveres (Tronquet 2006).
 Material estudiado:
 Tarragona: Fontscaldetes, XI-1964, 1 macho y 1 hembra, Museu leg. (MZB); Valls, 1 macho, F. Español leg. (MZB)
description: Published as part of Fernández, José Manuel Diéguez, 2010, Citas nuevas o interesantes de Staphylininae Latreille 1802 para la Península Ibérica (Coleoptera ¡ Staphylinidae)., pp. 7-14 in Arquivos Entomolóxicos 4 on page 12, DOI: 10.5281/zenodo.12644775
Minimum spanning paths and Hausdorff distance in finite ultrametric spaces
Creators: name: Petrov, Evgeniy
Publisher: name: arXiv
Year: 2024
Subjects: subject: General Topology (math.GN)
subject: FOS: Mathematics
subject: 54E35, 05C05

description: It is shown that a minimum weight spanning tree of a finite ultrametric space can be always found in the form of path. As a canonical representing tree such path uniquely defines the whole space and, moreover, it has much more simple structure. Thus, minimum spanning paths are a convenient tool for studying finite ultrametric spaces. To demonstrate this we use them for characterization of some known classes of ultrametric spaces. The explicit formula for Hausdorff distance in finite ultrametric spaces is also found. Moreover, the possibility of using minimum spanning paths for finding this distance is shown.
description: 18 pages, 4 figures
title: Exploring microbial diversity in Greenland Ice Sheet supraglacial habitats through culturing-dependent and -independent approaches
Creators: name: Jaarsma, Ate H.
name: Sipes, Katie
name: Zervas, Athanasios
name: Campuzano Jiménez, Francisco
name: Ellegaard-Jensen, Lea
name: Thogersen, Mariane S.
name: Stougaard, Peter
name: Benning, Liane G.
name: Tranter, Martyn
name: Anesio, Alexandre Magno
Publisher: name: Freie Universität Berlin
Year: 2023
Subjects: subject: amplicons
subject: Greenland Ice Sheet
subject: in situ culturing
subject: isolates
subject: MAGs
subject: metagenome
classificationCode: 570
subject: Biowissenschaften; Biologie

description: The microbiome of Greenland Ice Sheet supraglacial habitats is still underinvestigated, and as a result there is a lack of representative genomes from these environments. In this study, we investigated the supraglacial microbiome through a combination of culturing-dependent and -independent approaches. We explored ice, cryoconite, biofilm, and snow biodiversity to answer: (1) how microbial diversity differs between supraglacial habitats, (2) if obtained bacterial genomes reflect dominant community members, and (3) how culturing versus high throughput sequencing changes our observations of microbial diversity in supraglacial habitats. Genomes acquired through metagenomic sequencing (133 high-quality MAGs) and whole genome sequencing (73 bacterial isolates) were compared to the metagenome assemblies to investigate abundance within the total environmental DNA. Isolates obtained in this study were not dominant taxa in the habitat they were sampled from, in contrast to the obtained MAGs. We demonstrate here the advantages of using metagenome SSU rRNA genes to reflect whole-community diversity. Additionally, we demonstrate a proof-of-concept of the application of in situ culturing in a supraglacial setting.
Polypedilum absensilobum Zhang, Song, Qi & Wang, 2016, sp. n.
Creators: name: Zhang, Ruilei
name: Song, Chao
name: Qi, Xin
name: Wang, Xinhua
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Chironomidae
Polypedilum
Polypedilum absensilobum

description: absensilobum sp. n.
Type locality. China, Fujian Province, Jianning County.
Distribution. OR: China (Fujian).
description: Published as part of Zhang, Ruilei, Song, Chao, Qi, Xin & Wang, Xinhua, 2016, Taxonomic review on the subgenus Tripodura Townes (Diptera: Chironomidae: Polypedilum) from China with eleven new species and a supplementary world checklist, pp. 1-53 in Zootaxa 4136 (1) on page 39, DOI: 10.11646/zootaxa.4136.1.1, http://zenodo.org/record/399782
Hereditary properties of finite ultrametric spaces
Creators: name: Petrov, Evgeniy A.
Publisher: name: arXiv
Year: 2024
Subjects: subject: General Topology (math.GN)
subject: FOS: Mathematics
subject: Primary 54E35, 05C05,

description: A characterization of finite homogeneous ultrametric spaces and finite ultrametric spaces generated by unrooted labeled trees is found in terms of representing trees. A characterization of finite ultrametric spaces having perfect strictly $n$-ary trees is found in terms of special graphs connected with the space. Further, we give a detailed survey of some special classes of finite ultrametric spaces, which were considered in the last ten years, and study their hereditary properties. More precisely, we are interested in the following question. Let $X$ be an arbitrary finite ultrametric space from some given class. Does every subspace of $X$ also belong to this class?
description: 25 pages, 4 figures. arXiv admin note: text overlap with arXiv:1610.08282