cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1 of Synthesis, characterization, DNA binding interactions, DFT calculations, and Covid-19 molecular docking of novel bioactive copper(I) complexes developed via unexpected reduction of azo-hydrazo ligands
Creators: name: Elsayed, Eman Hassan
name: Al-Wahaib, Dhuha
name: Ali, Ali El-Dissouky
name: Abd-El-Nabey, Beshir A.
name: Elbadawy, Hemmat A.
Publisher: name: figshare
Year: 2023
Subjects: subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Additional file 1. Supplementary file.
The Development of Sexual Attitudes in the Family of Origin and Sexual Satisfaction Later in Life
Creators: name: Christlieb, Bryant
Publisher: name: University of Nevada, Las Vegas
Year: 2016

description: The purpose of this study was to determine if variance for individuals' sexual satisfaction as well as attitudes toward sexual instrumentality, sexual permissiveness, sexual communion and attitudes could be predicted by family sexual communication during adolescence as well as various demographic factors such as age, years together, gender, race, income level, religion, religiosity and sexual orientation. This was done by recruiting 250 people via Mechanical Turk (www.mturk.com) and through undergraduate courses at the University of Nevada-Las Vegas. The researcher used an enter-method multiple regression model and Kendall's Tau for non-parametric data. The results of this study show that sexual satisfaction and sexual instrumentality cannot be predicted by these variables, however variance in sexual permissiveness, sexual communion and birth control attitudes could be predicted to varying degrees by the independent variables. The author then discusses the implications of these results and clinical applications as well as opportunities for future research.
Additional file 3: of Healthcare-associated infections in intensive care units in Taiwan, South Korea, and Japan: recent trends based on national surveillance reports
Creators: name: Chiang, Cho-Han
name: Pan, Sung-Ching
name: Yang, Tyan-Shin
name: Matsuda, Keisuke
name: Kim, Hong
name: Choi, Young
name: Hori, Satoshi
name: Wang, Jann-Tay
name: Sheng, Wang-Huei
name: Chen, Yee-Chun
name: Chang, Feng-Yee
name: Chang, Shan-Chwen
Publisher: name: figshare
Year: 2018
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Table S3. Common causative pathogens of healthcare-associated urinary tract infections in intensive care units enrolled in national surveillance systems in Taiwan, South Korea, and Japan in 2015. (DOCX 36 kb)
Effect of Thermal Treatment on High Temperature Deformation of Alloy EP-823
Creators: name: Lewis, Martin Milburn
Publisher: name: University of Nevada, Las Vegas
Year: 2016

description: The objective of this research topic is to determine mechanical properties of Alloy EP-823 and to provide a mechanistic understanding of its sensitivity to both thermal treatment and performance temperature. EP-823 is a leading target material for accelerator-driven waste transmutation applications. Overall, the tensile test results of Alloy EP-823 indicated a general trend of decreasing mechanical performance with an increase in tempering time. An increase in tempering time had a statistically significant inverse relationship with ultimate tensile strength (UTS) and yield strength (YS). An increase in tempering time did not have a significant effect on elongation and reduction in area. Performance temperature effects, however, were more noticeable, trending UTS and YS values downward with increasing temperature. Elongation values experience a slight reduction up to 300°C then ramped upwards for increasing temperatures. Reduction of area values appeared unaffected by an increase in temperature up to 400°C but did experience an increase with greater temperatures beyond 400°C. With increasing temperature the mechanical properties changed gradually and predictably up to 400°C, but at 500°C they changed drastically, implying that a critical temperature can be found between 400°C and 500°C. This temperature could be important to design integrity. At performance temperatures beyond this critical temperature the material experiences unstable deformation shortly after reaching the yield strength value, exhibiting severely truncated uniform plastic deformation characteristics.
Additional file 1 of Identifying chronic obstructive pulmonary disease from integrative omics and clustering in lung tissue
Creators: name: Hobbs, Brian D
name: Morrow, Jarrett D
name: Wang, Xu-Wen
name: Liu, Yang-Yu
name: DeMeo, Dawn L
name: Hersh, Craig P
name: Celli, Bartolome R
name: Bueno, Raphael
name: Criner, Gerard J
name: Silverman, Edwin K
name: Cho, Michael H
Publisher: name: figshare
Year: 2023
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Supplementary Material 1
The environmental dependence of redox energetics of PuO2 and α-Pu2O3: A quantitative solution from DFT+U calculations
Creators: name: Sun, Bo
name: Liu, Haifeng
name: Song, Haifeng
name: Zhang, Guang-Cai
name: Zheng, Hui
name: Zhao, Xian-Geng
name: Zhang, Ping
Publisher: name: arXiv
Year: 2012
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We report a comprehensive density functional theory (DFT) + $U$ study of the energetics of charged and neutral oxygen defects in both PuO$_{2}$ and $α$-Pu$_{2}$O$_{3}$, and present a quantitative determination of the equilibrium compositions of reduced PuO$_{2}$ (PuO$_{2-x}$) as functions of environmental temperature and partial pressure of oxygen, which shows fairly agreement with corresponding high-temperature experiments. Under ambient conditions, the endothermic reduction of PuO$_{2}$ to $α$-Pu$_{2}$O$_{3} $ is found to be facilitated by accompanying volume expansion of PuO$_{2-x}$ and the possible migration of O-vacancy, whereas further reduction of $α$-Pu$_{2}$O$_{3}$ is predicted to be much more difficult. In contrast to the endothermic oxidation of PuO$_{2}$,\ the oxidation of $α$-Pu$_{2} $O$_{3}$ is a stable exothermic process.
description: 5 PLA pages, 4 figures
On verification of software components
Creators: name: Alkazemi, Basem Y.
Publisher: name: arXiv
Year: 2012
Subjects: subject: Software Engineering (cs.SE)
subject: FOS: Computer and information sciences
subject: D.2.7
subject: 68N99

description: Utilizing third party software components in the development of new systems became somewhat unfavourable approach among many organizations nowadays. This reluctance is primarily built due to the lack of support to verify the quality attributes of software components in order to avoid potential mismatches with systems requirements. This paper presents an approach to overcome this problem by providing a tool support to check component compatibility to a specification provided by developers. So, components compatibility can be checked and developers can verify components that match their quality attributes prior of integrating them into their system.
description: 13 pages, 3 figures
Additional file 4: of Healthcare-associated infections in intensive care units in Taiwan, South Korea, and Japan: recent trends based on national surveillance reports
Creators: name: Chiang, Cho-Han
name: Pan, Sung-Ching
name: Yang, Tyan-Shin
name: Matsuda, Keisuke
name: Kim, Hong
name: Choi, Young
name: Hori, Satoshi
name: Wang, Jann-Tay
name: Sheng, Wang-Huei
name: Chen, Yee-Chun
name: Chang, Feng-Yee
name: Chang, Shan-Chwen
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Table S4. Common causative pathogens of healthcare-associated bloodstream infections in intensive care units enrolled in national surveillance systems in Taiwan, South Korea, and Japan in 2015. (DOCX 36 kb)
Additional file 5 of Healthcare-associated infections in intensive care units in Taiwan, South Korea, and Japan: recent trends based on national surveillance reports
Creators: name: Chiang, Cho-Han
name: Pan, Sung-Ching
name: Yang, Tyan-Shin
name: Matsuda, Keisuke
name: Kim, Hong Bin
name: Choi, Young Hwa
name: Hori, Satoshi
name: Wang, Jann-Tay
name: Sheng, Wang-Huei
name: Chen, Yee-Chun
name: Chang, Feng-Yee
name: Chang, Shan-Chwen
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Table S5. Common causative pathogens of healthcare-associated pneumonia in intensive care units enrolled in national surveillance systems in Taiwan, South Korea, and Japan in 2015. (DOCX 36 kb)
Dispersive estimates for matrix Schrödinger operators in dimension two
Creators: name: Erdoğan, M. Burak
name: Green, William R.
Publisher: name: arXiv
Year: 2012
Subjects: subject: Analysis of PDEs (math.AP)
subject: FOS: Mathematics

description: We consider the non-selfadjoint operator [\cH = [{array}{cc} -Δ+ μ-V_1 & -V_2 V_2 & Δ- μ+ V_1 {array}]] where $μ>0$ and $V_1,V_2$ are real-valued decaying potentials. Such operators arise when linearizing a focusing NLS equation around a standing wave. Under natural spectral assumptions we obtain $L^1(\R^2)\times L^1(\R^2)\to L^\infty(\R^2)\times L^\infty(\R^2)$ dispersive decay estimates for the evolution $e^{it\cH}P_{ac}$. We also obtain the following weighted estimate $$ \|w^{-1} e^{it\cH}P_{ac}f\|_{L^\infty(\R^2)\times L^\infty(\R^2)}\les \f1{|t|\log^2(|t|)} \|w f\|_{L^1(\R^2)\times L^1(\R^2)},\,\,\,\,\,\,\,\, |t| >2, $$ with $w(x)=\log^2(2+|x|)$.
description: arXiv admin note: text overlap with arXiv:1202.0050
Additional file 1 of Impacts of COVID-19 crisis and some related factors on the mental health of 37150 Vietnamese students: a cross-sectional online study
Creators: name: Duong, Chau Bao
name: Van Tran, Nhi
name: Nguyen, An Hoang
name: Le, Thong Nhat
name: Ha, Bien Huy
name: Do, Chau Ngoc Phuc
name: Huynh, Khon
name: Le, Thong Minh
name: Nguyen, Thao Phuong
name: Nguyen, Hoai Thi Thu
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1.
Additional file 1 of Clinical competence, communication ability and adherence to choosing wisely recommendations for lipid reducing drug use in older adults
Creators: name: Tamblyn, Robyn
name: Moraga, Teresa
name: Girard, Nadyne
name: Chan, Fiona K. I.
name: Habib, Bettina
name: Boulet, John
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Science Policy
subject: Mental Health
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Additional file 1: eFigure 1. International Medical Graduates Who Completed the Educational Commission for Foreign Medical Graduates (ECFMG) Clinical Assessment Examination and Were Eligible for the Primary and Secondary Prevention Cohorts.
Additional file 7 of Effect of solution saturation state and temperature on diopside dissolution
Creators: name: Dixit, Suvasis
name: Carroll, Susan A
Publisher: name: figshare
Year: 2023
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences

description: Authors’ original file for figure 7
In silico docking studies and synthesis of new phosphoramidate derivatives of 6-fluoro-3-(piperidin-4-yl)benzo[d]isoxazole as potential antimicrobial agents
Creators: name: Sivala, Munichandra Reddy
name: Chintha, Venkataramaiah
name: Potla, Krishna Murthy
name: Chinnam, Sampath
name: Chamarthi, Naga Raju
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 60506 Virology

description: A new class of phosphoramidate derivatives of 6-fluoro-3-(piperidin-4-yl)benzo[d]isoxazole were synthesized in good to excellent yields (78–96%) by an in situ, three-step process. All the synthesized molecules were evaluated for anti-bacterial and anti-fungal activities using in vitro and in silico methods. The results revealed that the compounds 4b, 4d, 4h, 4i, and 4j exhibited the most promising anti-bacterial activity against S. aureus, B. subtilis, K. pneumoniae, S. typhi and P. mirabilis and anti-fungal activity against A. niger and A. flavus when compared with the standard drugs Norfloxacin and Nystatin at concentrations of 25, 50, 75 and 100 µg/mL. The rest of the title compounds have shown moderate activity against all the bacterial and fungal strains. Molecular docking studies revealed that the synthesized compounds have exhibited significant binding modes with high dock scores ranging from −7.2 to −9.5 against 3V2B protein when compared with the standard drugs Norfloxacin (−5.8) and Nystatin (−6.6) respectively. Hence, it is suggested that the synthesized phosphoramidate derivatives of 6-fluoro-3-(piperidin-4-yl)benzo[d]isoxazole will stand as the promising antimicrobial drug candidates in future.
Additional file 13: of Germline and somatic variations influence the somatic mutational signatures of esophageal squamous cell carcinomas in a Chinese population
Creators: name: Guo, Jintao
name: Huang, Jiankun
name: Zhou, Ying
name: Zhou, Yulin
name: Yu, Liying
name: Li, Huili
name: Hou, Lingyun
name: Zhu, Liuwei
name: Ge, Dandan
name: Zeng, Yuanyuan
name: Guleng, Bayasi
name: Li, Qiyuan
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Pharmacology
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Virology

description: Figure S8. The effects of TP53, ZNF750, CDC27 and other clinical features on the activity of the “NpCpG” signature and the “AID/APOBEC-2” signature in the subtypes of ESCC. The somatic status and the genetic burden of TP53 influence the activities of the “NpCpG” signature (a) and the “AID/APOBEC-2” signature (b) in subtype 1 to 3, independent of other clinical features. And the somatic status and the genetic burden of ZNF750 influence the activities of the “NpCpG” signature (c) and the “AID/APOBEC-2” signature (d) in subtype 1 to 3, independent of other clinical features. The somatic copy number amplification and the genetic burden of CDC27 influence the activity of the “NpCpG” signature (e) and the “AID/APOBEC-2” signature (f) in subtype 1 to 3, independent of other clinical features. P values are based on multivariate linear regression analysis: *P < 0.05, **P < 0.01, ***P < 0.001. (PDF 892 kb)
Sylvilagus aquaticus
Creators: name: Hoffmann, Robert S.
Publisher: name: Zenodo
Year: 1993
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Lagomorpha
Leporidae
Sylvilagus
Sylvilagus aquaticus

description: Sylvilagus aquaticus (Bachman, 1837). J. Acad. Nat. Sci. Philadelphia, 7:319. TYPE LOCALITY: "...western parts of that state" [Alabama], Restricted by Nelson (1909:272) to "Western Alabama ". DISTRIBUTION: S Illinois and SW Indiana, SW Missouri to SE Kansas southward through extreme W Kentucky and W Tennessee to E Oklahoma, E Texas, Louisiana, Alabama, Mississippi and NW South Carolina (USA). STATUS: Some range reduction, but remains abundant (Chapman and Ceballos, 1990). SYNONYMS: attwateri (J. Allen, 1895); douglasii (Gray, 1837; part) littoralis Nelson, 1909; telmalemonus (Elliott, 1899). COMMENTS: Subgenus Tapeti (Gureev, 1964:162). Reviewed by Chapman and Feldhamer (1981, Mammalian Species, 151).
description: Published as part of Robert S. Hoffmann, 1993, Order Lagomorpha, pp. 807-827 in Mammal Species of the World (2 nd Edition), Washington and London :Smithsonian Institution Press on page 824, DOI: 10.5281/zenodo.7353088
description: {"references": ["Nelson, E. W. 1909. The rabbits of North America. North American Fauna, 29: 1 - 314.", "Chapman, J. A., and G. G. Ceballos. 1990. The cottontails. Pp. 95 - 110, in Rabbits, hares and pikas (J. A. Chapman and J. E. C. Flux, eds.). I. U. C. N., Gland, Switzerland, 168 pp.", "Gray, J. E. 1837 [1838]. On a new species of paradoxure (Paradoxurus derbianus) with remarks on some Mammalia recently purchased by the British Museum, and characters of the new species. Proceedings of the Zoological Society of London, 1837: 67.", "Gureev, A. A. 1964. Fauna SSSR, Mlekopitayushchie, tom. 3, vyp. 10, Zaitseobraznye (Lagomorpha) [Fauna of the USSR, mammals, vol. 3, pt. 10, Lagomorpha]. Nauka, Moscow-Leningrad, 276 pp. (in Russian).", "Chapman, J. A., and G. A. Feldhamer. 1981. Sylvilagus aquaticus. Mammalian Species, 151: 1 - 4."]}
Multiple periodic oscillations in the radio light curves of NRAO 530
Creators: name: Xie, Mingjie
name: Wang, Junyi
name: An, Tao
name: Zheng, Lin
name: Han, Xu
Publisher: name: arXiv
Year: 2012
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: In this paper, the time series analysis method CLEANest is employed to search for characteristic periodicities in the radio light curves of the blazar NRAO 530 at 4.8, 8.0 and 14.5 GHz over a time baseline of three decades. Two prominent periodicities on time scales of about 6.3 and 9.5 yr are identified at all three frequencies, in agreement with previous results derived from different numerical techniques, confirming the multiplicity of the periodicities in NRAO 530. In addition to these two significant periods, there is also evidence of shorter-timescale periodicities of about 5.0 yr, 4.2 yr, 3.4 yr and 2.8 yr showing lower amplitude in the periodograms. The physical mechanisms responsible for the radio quasi-periodic oscillations and the multiplicity of the periods are discussed.
description: accepted for publication in SCIENCE CHINA (Physics, Mechanics & Astronomy), 8 pages, 7 figures
Additional file 8 of Effect of solution saturation state and temperature on diopside dissolution
Creators: name: Dixit, Suvasis
name: Carroll, Susan A
Publisher: name: figshare
Year: 2023
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences

description: Authors’ original file for figure 8
On C*-Algebras Generated by Isometries with Twisted Commutation Relations
Creators: name: Weber, Moritz
Publisher: name: arXiv
Year: 2012
Subjects: subject: Operator Algebras (math.OA)
subject: K-Theory and Homology (math.KT)
subject: FOS: Mathematics
subject: 46L05 (Primary) 46L80, 19Kxx, 46L65 (Secondary)

description: In the theory of C*-algebras, interesting noncommutative structures arise as deformations of the tensor product. For instance, the rotation algebra may be seen as a scalar twist deformation of the tensor product of the functions on the circle with itself. We deform the tensor product of two Toeplitz algebras in the same way, introducing the universal C*-algebra generated by two isometries u and v such that uv=e^{it}vu and u*v=e^{-it}vu*, for a fixed real parameter t. Since the second relation implies the first one, we also consider the universal C*-algebra generated by two isometries u and v with the weaker relation uv=e^{it}vu. Such a "weaker case" does not exist in the case of unitaries, and it turns out to be much more interesting than the twisted "tensor product case" of two Toeplitz algebras. We show that the C*-algebra in the "tensor product case" is nuclear, whereas in the "weaker case" it is not even exact. Also, we compute the K-groups and we obtain K_0 = Z and K_1 = 0 for both C*-algebras. This answers a question raised by Murphy in 1994 concerning the K-theory of the C*-algebra associated to N^2.
description: 35 pages
Additional file 1 of Caring for patients during voluntarily stopping of eating and drinking (VSED): experiences of a palliative care team in Germany
Creators: name: Batzler, Yann-Nicolas
name: Schallenburger, Manuela
name: Maletzki, Pia
name: Tenge, Theresa
name: Schlieper, Daniel
name: Schwartz, Jacqueline
name: Neukirchen, Martin
Publisher: name: figshare
Year: 2023
Subjects: Medicine
Biological Sciences not elsewhere classified
Cancer
Science Policy
Mental Health

description: Supplementary Material 1
The Making of the Chinese “Gay Wives”: Technology, Authenticity, and Identity in the Digital Age
Creators: name: Wu, Yiyi
Publisher: name: University of Chicago
Year: 2021
Subjects: subject: marriage; gay's wives; technology; social media; authenticity; politics of recognition

description: This paper explores the narratives and stories of a population of Chinese women who identify themselves as tongqi (同妻), meaning gay's wives. They consider themselves as heterosexual women who unknowingly marry gay men who purposefully hide their same-sex attraction and trick women into marriage to fulfill their societal obligations of fatherhood. While the majority of tongqi describe themselves as the victims of “marriage fraud” commited by “closeted” gay men whose homosexuality has discounted the “realness” of their marriage, this thesis problematizes such a generalized accusation by showing how tongqi’s authenticating process has rearranged the meaning of realness and objectivity through their techno-interactivity. Specifically, this thesis contends that tongqi have become both the producers and consumers of particular rhetorics of authenticity and a particular ‘authenticated’ and rigid understanding of homosexuality. Moreover, while their goal behind such an authenticating process is to earn social recognition as a unique group of the marginalized in China, this thesis argues that tongqi’s insistence that they are not others reinforces traditional gender scripts against women and fuels social discrimination.
title: Endangered Species Act Section 7(a)(2) Biological Opinion, and Magnuson-Stevens Fishery Conservation and Management Act Essential Fish Habitat Response for the Talon Private Capital Bank Stabilization and Sediment Removal Project, King County, Washington (6th Field HUC 171100130305).
titleType: Other
Creators: name: United States. National Marine Fisheries Service. West Coast Region
Publisher: name: United States. National Marine Fisheries Service. West Coast Region
Year: 2020

description: ESA Section 7 Consultation ; WCRO-2019-02226
Natural selection. V. How to read the fundamental equations of evolutionary change in terms of information theory
Creators: name: Frank, Steven A.
Publisher: name: arXiv
Year: 2012
Subjects: subject: Populations and Evolution (q-bio.PE)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Biological sciences
subject: FOS: Physical sciences

description: The equations of evolutionary change by natural selection are commonly expressed in statistical terms. Fisher's fundamental theorem emphasizes the variance in fitness. Quantitative genetics expresses selection with covariances and regressions. Population genetic equations depend on genetic variances. How can we read those statistical expressions with respect to the meaning of natural selection? One possibility is to relate the statistical expressions to the amount of information that populations accumulate by selection. However, the connection between selection and information theory has never been compelling. Here, I show the correct relations between statistical expressions for selection and information theory expressions for selection. Those relations link selection to the fundamental concepts of entropy and information in the theories of physics, statistics, and communication. We can now read the equations of selection in terms of their natural meaning. Selection causes populations to accumulate information about the environment.
Additional file 1 of EMS-induced mutagenesis in Choy sum (Brassica chinensis var. parachinensis) and selection for low light tolerance using abiotic stress indices
Creators: name: Deivanai, Subramanian
name: Sng, Benny Jian Rong
name: Van Vu, Kien
name: Shibu, Thankaraj Salammal Maria
name: Jang, In-Cheol
name: Ramachandran, Srinivasan
Publisher: name: figshare
Year: 2023
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 1.
One-point remapping of Lagrangian perturbation theory in the mildly non-linear regime of cosmic structure formation
Creators: name: Leclercq, Florent
name: Jasche, Jens
name: Gil-Marín, Héctor
name: Wandelt, Benjamin
Publisher: name: arXiv
Year: 2013
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: On the smallest scales, three-dimensional large-scale structure surveys contain a wealth of cosmological information which cannot be trivially extracted due to the non-linear dynamical evolution of the density field. Lagrangian perturbation theory (LPT) is widely applied to the generation of mock halo catalogs and data analysis. In this work, we compare topological features of the cosmic web such as voids, sheets, filaments and clusters, in the density fields predicted by LPT and full numerical simulation of gravitational large-scale structure formation. We propose a method designed to improve the correspondence between these density fields, in the mildly non-linear regime. We develop a computationally fast and flexible tool for a variety of cosmological applications. Our method is based on a remapping of the approximately-evolved density field, using information extracted from N-body simulations. The remapping procedure consists of replacing the one-point distribution of the density contrast by one which better accounts for the full gravitational dynamics. As a result, we obtain a physically more pertinent density field on a point-by-point basis, while also improving higher-order statistics predicted by LPT. We quantify the approximation error in the power spectrum and in the bispectrum as a function of scale and redshift. Our remapping procedure improves one-, two- and three-point statistics at scales down to 8 Mpc/h.
description: 22 pages, 19 figures, 1 table. Matches JCAP published version and includes the addendum "One-point statistics of the Lagrangian displacement field" (JCAP04 (2015) 026, arXiv:1507.08664)
Additional file 1 of In vivo mutagenicity assessment of styrene in MutaMouse liver and lung
Creators: name: Murata, Yasumasa
name: Natsume, Masakatsu
name: Iso, Takako
name: Shigeta, Yoshiyuki
name: Hirose, Nozomu
name: Umano, Takaaki
name: Horibata, Katsuyoshi
name: Sugiyama, Kei-ichi
name: Masumura, Kenichi
name: Hirose, Akihiko
name: Matsumoto, Mariko
Publisher: name: figshare
Year: 2023
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 60506 Virology

description: Additional file 1. Supporting information table 1 data from previous controls (transgenic rodent gene mutation assay (lacz assay)
Will the unipolarity survive?
Creators: name: Chowdhury, Sayeed Muhammed Murtaza
Publisher: name: University of Chicago
Year: 2021
Subjects: subject: Multipolarity
subject: Unipolarity
subject: Path dependency
subject: Assabiya
subject: Ibn Khaldun

description: The thesis attempts to showcase why the upcoming multipolarity will have a different texture than the historic multipolar systems of the past. The thesis deviates from existing literature in its definition of what the future multipolarity will mean and what it will entail. Utilizing the concept of "assabiya" propagated by Ibn Khaldun, the thesis tries to exhibit the multiple ways the current hegemon, the US, has exerted its influence over certain other nations to maintain and solidify its position. The seeds planted from the time of the second great war to the unipolar moment and its resulting path dependency have created a group of countries that binds to the center of the order, i.e., the US, and collectively deter the rise of any power beyond the walls of this order. It is due to that the thesis displays that the upcoming multipolarity will have a different character and, in many ways, will function like a heavily tilted multipolarity, where the US will have an edge. The thesis highlights that the US-led "assabiya" will not only be able to sustain itself but will proactively, collectively, deter the rise of China.
Domain growth and aging scaling in coarsening disordered systems
Creators: name: Park, Hyunhang
name: Pleimling, Michel
Publisher: name: arXiv
Year: 2012
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: Using extensive Monte Carlo simulations we study aging properties of two disordered systems quenched below their critical point, namely the two-dimensional random-bond Ising model and the three-dimensional Edwards-Anderson Ising spin glass with a bimodal distribution of the coupling constants. We study the two-times autocorrelation and space-time correlation functions and show that in both systems a simple aging scenario prevails in terms of the scaling variable $L(t)/L(s)$, where $L$ is the time-dependent correlation length, whereas $s$ is the waiting time and $t$ is the observation time. The investigation of the space-time correlation function for the random-bond Ising model allows us to address some issues related to superuniversality.
description: 8 pages, 9 figures, to appear in European Physical Journal B
Efficient Algorithms for Clustering Polygonal Obstacles
Creators: name: Manandhar, Sabbir Kumar
Publisher: name: University of Nevada, Las Vegas
Year: 2016

description: Clustering a set of points in Euclidean space is a well-known problem having applications in pattern recognition, document image analysis, big-data analytics, and robotics. While there are a lot of research publications for clustering point objects, only a few articles have been reported for clustering a given distribution of obstacles. In this thesis we examine the development of efficient algorithms for clustering a given set of convex obstacles in the 2D plane. One of the methods presented in this work uses a Voronoi diagram to extract obstacle clusters. We also consider the implementation issues of point/obstacle clustering algorithms.
Sylvilagus audubonii
Creators: name: Hoffmann, Robert S.
Publisher: name: Zenodo
Year: 1993
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Lagomorpha
Leporidae
Sylvilagus
Sylvilagus audubonii

description: Sylvilagus audubonii (Baird, 1858). Mammalia, in Repts. U.S. Expl. Surv., 8(8):608. TYPE LOCALITY: "San Francisco" [San Francisco Co., California, USA]. DISTRIBUTION: NE Puebla and W Veracruz (Mexico) to NC Montana and SW North Dakota, NC Utah, C Nevada, and NC California (USA), south to Baja California and C Sinaloa (Mexico). STATUS: Secure (Chapman and Ceballos, 1990). SYNONYMS: arizonae (J. Allen, 1877); baileyi (Merriam, 1897); cedrophilus Nelson, 1907; confinis 0. Allen, 1898); goldmani (Nelson, 1904); laticinctus (Elliot, 1904); major (Mearns, 1896); minor (Mearns, 1896); neomexicanus Nelson, 1907; parvulus (J. Allen, 1904); rufipes (Elliot, 1904); sanctidiegi (Miller, 1899); vallicola Nelson, 1907; warreni Nelson, 1907. COMMENTS: Subgenus Sylvilagus (Gureev, 1964:169). Reviewed by Chapman and Willner (1978, Mammalian Species, 106).
description: Published as part of Robert S. Hoffmann, 1993, Order Lagomorpha, pp. 807-827 in Mammal Species of the World (2 nd Edition), Washington and London :Smithsonian Institution Press on page 824, DOI: 10.5281/zenodo.7353088
description: {"references": ["Chapman, J. A., and G. G. Ceballos. 1990. The cottontails. Pp. 95 - 110, in Rabbits, hares and pikas (J. A. Chapman and J. E. C. Flux, eds.). I. U. C. N., Gland, Switzerland, 168 pp.", "Merriam, C. H. 1897. The generic names Ictis, Arctogale, and Arctogalidia. Science, 5: 302.", "Allen, J. A. 1898. Revision of the chickarees, or North American red squirrels (subgenus Tamiasciurus). Bulletin of the American Museum of Natural History, 10: 249 - 298.", "Mearns, E. A. 1896. Preliminary diagnoses of new mammals from the Mexican border of the United States. Proceedings of the United States National Museum, 18: 443 - 447.", "Gureev, A. A. 1964. Fauna SSSR, Mlekopitayushchie, tom. 3, vyp. 10, Zaitseobraznye (Lagomorpha) [Fauna of the USSR, mammals, vol. 3, pt. 10, Lagomorpha]. Nauka, Moscow-Leningrad, 276 pp. (in Russian).", "Chapman, J. A., and G. R. Willner. 1978. Sylvilagus audubonii. Mammalian Species, 106: 1 - 4."]}
125 GeV Higgs as a pseudo-Goldstone boson in supersymmetry with vector-like matters
Creators: name: Bae, Kyu Jung
name: Jung, Tae Hyun
name: Kim, Hyung Do
Publisher: name: arXiv
Year: 2012
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We propose a possibility of the 125 GeV Higgs being a pseudo-Goldstone boson in supersymmetry with extra vector-like fermions. Higgs mass is obtained from loops of top quark and vector-like fermions from the global symmetry breaking scale f at around TeV. The mu, Bmu/mu \sim f are generated from the dynamics of global symmetry breaking and the Higgs quartic coupling vanishes at f as tan beta \simeq 1. The relation of msoft \sim $4πM_Z$ with f \sim mu \sim m_soft \sim TeV is obtained and large mu does not cause a fine tuning for the electroweak symmetry breaking. The Higgs to di-photon rate can be enhanced from the loop of uncolored vector-like matters. The stability problem of Higgs potential with vector-like fermions can be nicely cured by the UV completion with the Goldstone picture.
description: 28 pages, 8 figures
Additional file 5: of Healthcare-associated infections in intensive care units in Taiwan, South Korea, and Japan: recent trends based on national surveillance reports
Creators: name: Chiang, Cho-Han
name: Pan, Sung-Ching
name: Yang, Tyan-Shin
name: Matsuda, Keisuke
name: Kim, Hong
name: Choi, Young
name: Hori, Satoshi
name: Wang, Jann-Tay
name: Sheng, Wang-Huei
name: Chen, Yee-Chun
name: Chang, Feng-Yee
name: Chang, Shan-Chwen
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Table S5. Common causative pathogens of healthcare-associated pneumonia in intensive care units enrolled in national surveillance systems in Taiwan, South Korea, and Japan in 2015. (DOCX 36 kb)
Multidimensional realistic modelling of Cepheid-like variables. I: Extensions of the ANTARES code
Creators: name: Mundprecht, Eva
name: Muthsam, Herbert J.
name: Kupka, Friedrich
Publisher: name: arXiv
Year: 2012
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We have extended the ANTARES code to simulate the coupling of pulsation with convection in Cepheid-like variables in an increasingly realistic way, in particular in multidimensions, 2D at this stage. Present days models of radially pulsating stars assume radial symmetry and have the pulsation-convection interaction included via model equations containing ad hoc closures and moreover parameters whose values are barely known. We intend to construct ever more realistic multidimensional models of Cepheids. In the present paper, the first of a series, we describe the basic numerical approach and how it is motivated by physical properties of these objects which are sometimes more, sometimes less obvious. - For the construction of appropriate models a polar grid co-moving with the mean radial velocity has been introduced to optimize radial resolution throughout the different pulsation phases. The grid is radially stretched to account for the change of spatial scales due to vertical stratification and a new grid refinement scheme is introduced to resolve the upper, hydrogen ionisation zone where the gradient of temperature is steepest. We demonstrate that the simulations are not conservative when the original weighted essentially non-oscillatory method implemented in ANTARES is used and derive a new scheme which allows a conservative time evolution. The numerical approximation of diffusion follows the same principles. Moreover, the radiative transfer solver has been modified to improve the efficiency of calculations on parallel computers. We show that with these improvements the ANTARES code can be used for realistic simulations of the convection-pulsation interaction in Cepheids. We discuss the properties of several models which include the upper 42% of a Cepheid along its radial coordinate, assume different opening angles, and are suitable for an in-depth study of convection and pulsation.
description: 15 pages, 10 figures, 9 tables, to be submitted to Monthly Notices of the RAS
Poisson bracket on 1-forms and evolutionary partial differential equations
Creators: name: Arsie, Alessandro
name: Lorenzoni, Paolo
Publisher: name: arXiv
Year: 2012
Subjects: subject: Mathematical Physics (math-ph)
subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: FOS: Physical sciences

description: We introduce a bracket on 1-forms defined on ${\cal J}^{\infty}(S^1, \mathbb{R}^n)$, the infinite jet extension of the space of loops and prove that it satisfies the standard properties of a Poisson bracket. Using this bracket, we show that certain hierarchies appearing in the framework of $F$-manifolds with compatible flat connection $(M, \nabla, \circ)$ are Hamiltonian in a generalized sense. Moreover, we show that if a metric $g$ compatible with $\nabla$ is also invariant with respect to $\circ$, then this generalized Hamiltonian set-up reduces to the standard one.
description: 35 pages
Additional file 9 of Effect of solution saturation state and temperature on diopside dissolution
Creators: name: Dixit, Suvasis
name: Carroll, Susan A
Publisher: name: figshare
Year: 2023
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences

description: Authors’ original file for figure 9
Additional file 1 of Perceptions of the primary health care team about the implementation of integrated care of patients with type 2 diabetes and hypertension in Slovenia: qualitative study
Creators: name: Stojnić, Nataša
name: Klemenc-Ketiš, Zalika
name: Mori Lukančič, Majda
name: Zavrnik, Črt
name: Poplas Susič, Antonija
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Supplementary Material 1
MOESM1 of Metabolic engineering of Saccharomyces cerevisiae for 7-dehydrocholesterol overproduction
Creators: name: Guo, Xiao-Jing
name: Xiao, Wen-Hai
name: Wang, Ying
name: Yao, Ming-Dong
name: Zeng, Bo-Xuan
name: Liu, Hong
name: Zhao, Guang-Rong
name: Yuan, Ying-Jin
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified

description: Additional file 1: Table S1. Oligonucleotides used in this study. Table S2. The Codon-optimized sequences of DHCR24s involved in this study. Table S3 Plasmids used in this study. Figure S1. Relative transcription level of the MVA pathway genes (a–h) and the post squalene pathway genes (i–r) in control and ΔERG5 strain. Cells were harvested at 10 h (glucose consumption phase) and 30 h (ethanol consumption phase). The relative transcription level for each gene was determined as 2−ΔΔCt using gene ALG9 for normalization. All data were from at least triplicate experiments. Significance levels of t-test were determined as “*” is for P < 0.05 and “**” is for P < 0.01. Figure S2. Cell growths of strains with DHCR24s from diversity species in YPD medium. The error bars represent standard deviation calculated from triplicate experiments. Hs, Homo sapiens; Mm, Mus musculus; Dr, Danio rerio; Ec, Equus caballus; Gg, Gallus gallus; Xt, Xenopus tropicalis; Bt, Bos Taurus; At, Arabidopsis thaliana; Gh, Gossypium hirsutum; Cg, Cryptococcus gattii; Tg, Trypanosoma grayi. Figure S3. Cell growths of strains SyBE_Sc01250009, SyBE_Sc0125XJ02 and SyBE_Sc0125XJ03 in YPD medium. Figure S4. Cell growths of strains SyBE_Sc0125XJ03, SyBE_Sc0125XJ04 and SyBE_Sc0125XJ06 in YPD medium. Figure S5. Effect of deleting lipids metabolism associated gene(s) on biomass building-up and 7-DHC production. a Cell growths of strains SyBE_Sc0125XJ06, SyBE_Sc0125XJ07, SyBE_Sc0125XJ08 and SyBE_Sc0125XJ09 in YPD medium as well as that of SyBE_Sc0125XJ08 in SC medium. b 7-DHC production of strain SyBE_Sc0125XJ08 in YPD medium and SC medium.
Up-regulation of SNHG6 activates SERPINH1 expression by competitive binding to miR-139-5p to promote hepatocellular carcinoma progression
Creators: name: Wu, Gang
name: Ju, Xueming
name: Wang, Youyu
name: Li, Zhixi
name: Gan, Xianfeng
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: We aimed to assess the roles of small nucleolar RNA host gene 6 (SNHG6) in hepatocellular carcinoma (HCC) progression, and establish the lncRNA-miRNA-mRNA regulation mechanism for HCC therapy. SNHG6 is one of the host genes in small nucleolar RNAs (snoRNAs), which make a difference in the development of human cancers. SERPINH1 is a gene encoding a member of the serpin superfamily of serine proteinase inhibitors with miRNA predicted by TargetScan and DIANA Tools. SNHG6, serpin family H member 1 (SERPINH1) and miR-139-5p expression levels in HCC tissues and cells were determined by quantitative real-time PCR (qRT-PCR). Migration and invasion of HCC cells were measured by transwell assay. Cell cycle analysis was determined by using flow cytometry. 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2-H-tetrazolium bromide (MTT) assay and colony formation assay were performed for cell viability analysis. The expression of SERPINH1 was detected by qRT-PCR and western blot. Dual-luciferase reporter gene assay was conducted to identify the targeted relationship between miR-139-5p and SNHG6, as well as SERPINH1 and miR-139-5p. The positive regulation between SNHG6 and SERPINH1 was demonstrated in this study. In contrast, miR-139-5p was significantly down-regulated in HCC cells, the inhibition of miR-139-5p promotes the proliferation of HCC cells, and accelerated the cell cycle of HCC cells. Our study demonstrated the co-expression of SNHG6 and SERPINH1 in HCC cells for the first time, which revealed that SNHG6 could serve as a novel oncogene for the HCC therapy by its regulation.