cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Rohdea fargesii Y. F. Deng 2017, comb. nov.
Creators: name: Deng, Yunfei
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Asparagales
Asparagaceae
Rohdea
Rohdea fargesii

description: Rohdea fargesii (Baill.) Y.F.Deng, comb. nov.
Basionym: Tupistra fargesii Baillon (1893: 1114). Type:— China. Chongqing: Chengkou “Su-tchuen Oriental, dans le district de Tchen-Kéou-tin”, 1600 m, R.P. Farges 114 (holotype P!).
Tupistra chinensis Baker (1889: t. 1867). Campylandra chinensis (Baker) Tamura et al. (2000: 159). Rohdea chinensis (Baker) Tanaka (2003: 331), not R. sinensis Léveille (1907: 371). Type:— China. Hubei: Badong, sine date, A. Henry 5023 (holotype K-000099920!).
Further synonyms are seen in Tanaka (2010).
description: Published as part of Deng, Yunfei, 2017, Rohdea fargesii, the correct name for Rohdea chinensis (Asparagaceae), pp. 298-299 in Phytotaxa 302 (3) on page 298, DOI: 10.11646/phytotaxa.302.3.12, http://zenodo.org/record/13687302
Tortaxis Pilsbry 1906
Creators: name: Man, Nem Sian
name: Ablett, Jonathan D.
name: Lwin, Ngwe
name: Sutcharit, Chirasak
name: Panha, Somsak
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Stylommatophora
Subulinidae
Tortaxis

description: GenusTortaxisPilsbry, 1906
Tortaxis Pilsbry, 1906: 5, 6. Zilch. 1959: 347. Schileyko 1999: 534. Schileyko 2011: 10. Do and Do 2014: 455.
Type species.
Achatina erecta Benson, 1842, by original designation.
Diagnosis.
Shell slender, cylindrically shaped; spire high, mostly turreted, and gradually attenuated; embryonic whorls smooth, and subsequent whorls with nearly smooth to strong radial ribs. Aperture vertical, narrow, and oblong; columella concave or straight and with spiral fold below; columellar margin with or without expansion near umbilicus. Umbilicus narrowly opened or closed.
Remarks.
Tortaxis can be distinguished from other subulinid taxa from Myanmar, namely Allopeas, Opeas, and Bacillum, by having a slender, cylindrical, and turreted spire, flatter whorls, smooth embryonic whorls, a large and rounded apex, and a distinct spiral fold on the columella (Table 2).
The genus is mainly distributed in Southeast Asia and southern China and comprises 14 extant species (Pilsbry 1906; Schileyko 1999; MolluscaBase 2023) and one Miocene-amber fossil from China (Yu et al. 2023). In Indochina, nine species have been reported from Vietnam, and only one species from Thailand (Panha 1998; Schileyko 2011; Do and Do 2014). In this study, we propose one new species which marks the first record of the genus in Myanmar.
description: Published as part of Man, Nem Sian, Ablett, Jonathan D., Lwin, Ngwe, Sutcharit, Chirasak & Panha, Somsak, 2024, Contributions on a small collection of the former Subulinidae Fischer & Crosse, 1877 (Eupulmonata, Achatinoidea) with catalogue of the Glessula and Rishetia species recorded from Myanmar, pp. 173-239 in ZooKeys 1208 on pages 173-239, DOI: 10.3897/zookeys.1208.116083
Porrentruy, Bibliothèque cantonale jurassienne, Ms. 1 : Missale pontificale basilieense episcopi Johannis de Venningen
Creators: name: Venningen, Johannes von
name: Venningen, Johannes von
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: 15th century parchment missal, made for Bishop Johann von Venningen (1458-1478). The expenditure records of Bishop Johann von Venningen permit tracing the individual stages of the making of this missal. This manuscript was created at the same time as ms. 2 and ms. 3. In 1462/1463, the final touches were added to the almost completed manuscript, the illumination, the initials, the fleuronné initials, and especially the attachment of the cover. For convenience, the order of the Ordo and the Canon was changed. Originally meant to be at the beginning of the manuscript, they were finally placed in the middle.
description: Online Since: 2014-04-09
Notosinister subulatus Laseron 1958
Creators: name: Bakker, Piet A. J.
name: Albano, Paolo G.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Triphoridae
Notosinister
Notosinister subulatus

description: Notosinister subulatus Laseron, 1958
Notosinister subulata Laseron, 1958: 634, fig. 206–207.
Norephora (Talophora) subulata (Laseron, 1958) — Gründel 1975: 157.
Talophora subulata (Laseron, 1958) — Marshall 1983: 81, fig. 33d–f.
Type locality. Australia, off Endeavour Reef, 20 fathoms deep (37 m).
Type material. Type material not located so far.
Distribution. Australia (Laseron 1958; Marshall 1983; Wilson 1994).
Remarks. The genus Notosinister is of masculine gender, therefore the name should be Notosinister subulatus.
description: Published as part of Bakker, Piet A. J. & Albano, Paolo G., 2022, Nomenclator, geographic and stratigraphic distribution of the family Triphoridae (Mollusca: Gastropoda), pp. 1-216 in Zootaxa 5088 (1) on page 167, DOI: 10.11646/zootaxa.5088.1.1, http://zenodo.org/record/5836536
Porrentruy, Bibliothèque cantonale jurassienne, Ms. 3 : Pontificale Basileense episcopi Johannis de Venningen (pars altera)
Creators: name: Venningen, Johannes von
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: Pontifical of Johann von Venningen, Bischop of Basel (1458-1478), produced at his request (second part). The expenditure records of Bishop Johann von Venningen permit tracing the individual stages of the making of this Pontifical. This manuscript was created at the same time as ms. 1 and ms. 2. In 1462/1463, the final touches were added to the almost completed manuscript, the illumination, the initials, the fleuronné initials, and especially the attachment of the cover.
description: Online Since: 2014-04-09
Porrentruy, Bibliothèque cantonale jurassienne, Ms. 5 : Missale Basileense
Creators: name: Heinrich Arnoldi
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: Missal following the liturgical custom of the Diocese of Basel, datable to around 1300. In the 15th century, a part containing the Ordo Missae was added, preceded by a Crucifixion miniature. The binding was restored in 1992 and replaces the unpreserved original binding.
description: Online Since: 2014-04-09
Porrentruy, Bibliothèque cantonale jurassienne, Ms. 6a : Biblia Sacra, pars prima
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: First part of a Bible (second part in Ms. 6b) containing the books of the Old Testament from Genesis to Iesus Sirach. The manuscript was produced in the same workshop as Ms. 6b and 6c; based on the style of the initials, it was made in Southwestern Germany during the second third of the 15th century. The decoration consists of small red and blue filigreed initials for the prologues and of larger ornamental initials at the beginning of the books. The manuscript is mentioned in the inventory of Prince-Bishop Philipp von Gundelsheim (1487-1553); according to a note on f. 1r, during the 19th century it became the property of the Jesuit College of Porrentruy, after which it became part of the collection of the Library of the Canton of Jura.
description: Online Since: 2014-09-23
Effects of miR-29c on proliferation and adipogenic differentiation of porcine bone marrow mesenchymal stromal cells
Creators: name: Zhang, Anjing
name: Lu, Lu
name: Yang, Fuxing
name: Luo, Tingting
name: Yang, Shuqi
name: Yang, Peidong
name: Li, Xuemin
name: Deng, Xiaoli
name: Qiu, Yang
name: Chen, Litong
name: Long, Keren
name: Pan, Dengke
name: Jin, Long
name: Li, Mingzhou
name: Chen, Li
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Hematology
subject: Plant Biology

description: microRNAs (miRNAs), a subclass of noncoding short RNAs, direct cells fate decisions that are important for cell proliferation and cell lineage decisions. Adipogenic differentiation contributes greatly to the development of white adipose tissue, involving of highly organized regulation by miRNAs. In the present study, we screened and identified 78 differently expressed miRNAs of porcine BMSCs during adipogenic differentiation. Of which, the role of miR-29c in regulating the proliferation and adipogenic differentiation was proved and detailed. Specifically, over-expression miR-29c inhibits the proliferation and adipogenic differentiation of BMSCs, which were reversed upon miR-29c inhibitor. Interference of IGF1 inhibits the proliferation and adipogenic differentiation of BMSCs. Mechanistically, miR-29c regulates the proliferation and adipogenic differentiation of BMSCs by targeting IGF1 and further regulating the MAPK pathway and the PI3K-AKT-mTOR pathway, respectively. In conclusion, we highlight the important role of miR-29c in regulating proliferation and adipogenic differentiation of BMSCs.
Porrentruy, Bibliothèque cantonale jurassienne, Ms. 6b : Biblia Sacra, pars altera
Creators: name: Hieronymus, Sophronius Eusebius
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: Second part of a Bible (first part in Ms. 6a) which, as also Ms. 6a and 6c, was produced in Southwestern Germany during the second third of the 15th century. The manuscript consists of two parts: the first part contains the remaining books of the Old Testament (Isaia to II Maccabeorum), the second part contains those of the New Testament. The books in the second part (105r-219v) are introduced by historiated or ornamental initials, while the beginnings of the chapters have blue red filigreed initials. The manuscript is mentioned in the inventory of Prince-Bishop Philipp von Gundelsheim (1487-1553); according to a note on f. 1r, during the 19th century it became the property of the Jesuit College of Porrentruy, after which it became part of the collection of the Library of the Canton of Jura.
description: Online Since: 2014-09-23
Porrentruy, Bibliothèque cantonale jurassienne, Ms. 7 : Missale festivum basileense episcopi Christofori de Utenheim
Creators: name: Utenheim, Christoph von
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: Missal following the liturgical custom of the Diocese of Basel, commissioned by Christoph of Utenheim, prince-bishop of Basel between 1502 and 1527; he had his coat of arms, crossed with that of the Diocese of Basel, painted in the lower margin of f. 2r. The Canon of the Mass, decorated with a historicized initial depicting the Mass of St. Gregory, is not original but was added later. The border with flower decoration in the side margin and the presumed miniature of the Crucifixion in the beginning were removed.
description: Online Since: 2014-04-09
Porrentruy, Bibliothèque cantonale jurassienne, Ms. 8 : Breviarium trajecense ad usum ecclesiae collegiatae Sancti Lebuini daventriae (Pars aestiva)
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: Given the liturgy and the presence of the Office for the Saint, this breviary originated in St. Lebuinus Church in Deventer (Netherlands). It belonged to Swibert de Keyserswerth (died after 1551), paternal grandfather of the Dutch organist and composer Jan Pieterszoon Sweelinck (1562-1621).
description: Online Since: 2014-04-09
Triforis sulcata Tenison Woods 1878
Creators: name: Bakker, Piet A. J.
name: Albano, Paolo G.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Triphoridae
Triforis
Triforis sulcata

description: † Triforis sulcata Tenison Woods, 1878
Triforis sulcata Tenison Woods, 1878b: 233, pl. 20, fig. 12.
Type locality. Australia, western Victoria, Muddy Creek.
Type stratum. Middle Miocene.
Type material. Type material not located so far.
Distribution. Australia (Tenison Woods 1878).
Geological age. Miocene (Tenison Woods 1878).
description: Published as part of Bakker, Piet A. J. & Albano, Paolo G., 2022, Nomenclator, geographic and stratigraphic distribution of the family Triphoridae (Mollusca: Gastropoda), pp. 1-216 in Zootaxa 5088 (1) on page 167, DOI: 10.11646/zootaxa.5088.1.1, http://zenodo.org/record/5836536
Porrentruy, Bibliothèque cantonale jurassienne, Ms. 10 : Pontifical of Charles de Neufchâtel, Archbishop of Besançon
Creators: name: Lichtenfels, Melchior von
name: Neufchâtel, Charles de
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: 15th century Pontifical. The ceremonies are represented as full page miniatures with ornamental initials, marginal decorations and several lines of text on the model of books of hours; in the text there are many colorful borders and ornamental initials, often with depictions of the liturgical objects mentioned in the text. In addition to the frequently recurring coat of arms of Melchior von Lichtenfels, Archbishop of Basel (1554-1575), there is the coat of arms of Charles de Neufchâtel, Archbishop of Besançon (1463-1498; visible on f. 1r), which gives an indication of the manuscript’s date of origin. As many other manuscripts from religious institutions, this manuscript came into the possession of the Jesuit College of Porrentruy during the French Revolution, until in the 20th century it became part of the collection of the Library of the Canton of Jura.
description: Online Since: 2014-09-23
Porrentruy, Bibliothèque cantonale jurassienne, Ms. 13 : Vocabularius brevilogus
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: According to the colophon on f. 329v, this Vocabularius brevilogus was copied by the scribe Martinus Hartmann in Hildesheim in 1452. The lemmas are set off by rubricated initials; space was left for larger initials which, with few exceptions, were not realized. In 1505 the then-owner of the manuscript, Johannes Hertlin from Augusta Regia, donated it to the Church of Sts. Alexander and Theodor in Ottobeuren; in the 20th century it has been in the possession of the Library of the Canton of Jura.
description: Online Since: 2014-09-23
Porrentruy, Bibliothèque cantonale jurassienne, Ms. 21 : Florilegium
Creators: name: Vergilius Maro, Publius
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: This 13th/14th century florilegium cites mainly the saints Bernard, Augustine and Gregory as well as biblical books with the Glossa ordinaria, Ambrose, Seneca, Aristotle and many others. The pastedowns consist of 12th century parchment fragments on which several lines from Virgil’s Georgica are legible.
description: Online Since: 2014-09-23
Development and analysis of scaffold-free adipose spheroids
Creators: name: Liszewski, Jesse
name: Klingelhutz, Aloysious
name: Sander, Edward A.
name: Ankrum, James
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Adipose tissue plays a crucial role in metabolic syndrome, autoimmune diseases, and many cancers. Because of adipose’s role in so many aspects of human health, there is a critical need for in vitro models that replicate adipose architecture and function. Traditional monolayer models, despite their convenience, are limited, showing heterogeneity and functional differences compared to 3D models. While monolayer cultures struggle with detachment and inefficient differentiation, healthy adipocytes in 3D culture accumulate large lipid droplets, secrete adiponectin, and produce low levels of inflammatory cytokines. The shift from monolayer models to more complex 3D models aims to better replicate the physiology of healthy adipose tissue in culture. This study introduces a simple and accessible protocol for generating adipose organoids using a scaffold-free spheroid model. The method, utilizing either 96-well spheroid plates or agarose micromolds, demonstrates increased throughput, uniformity, and ease of handling compared to previous techniques. This protocol allows for diverse applications, including drug testing, toxin screening, tissue engineering, and co-culturing. The choice between the two methods depends on the experimental goals, with the 96-well plate providing individualized control and the micromold offering scale advantages. The outlined protocol covers isolation, expansion, and characterization of stromal vascular fraction cells, followed by detailed steps for spheroid formation and optional downstream analyses.
Porrentruy, Bibliothèque cantonale jurassienne, Ms. 2 : Pontificale Basileense episcopi Johannis de Venningen (pars prima)
Creators: name: Venningen, Johannes von
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: Pontifical of Johann von Venningen, Bischop of Basel (1458-1478), produced at his request (first part). The expenditure records of Bishop Johann von Venningen permit tracing the individual stages of the making of this Pontifical. This manuscript was created at the same time as ms. 1 and ms. 3. In 1462/1463, the final touches were added to the almost completed manuscript, the illumination, the initials, the fleuronné initials, and especially the attachment of the cover.
description: Online Since: 2014-04-09
Triphoris sulcosa Pease 1871
Creators: name: Bakker, Piet A. J.
name: Albano, Paolo G.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Triphoridae
Triphoris
Triphoris sulcosa

description: Triphoris sulcosa Pease, 1871
Triphoris sulcosus Pease, 1871: 774.
Triforis sulcosus Pease, 1871 — Tryon 1887: 191.
Type locality. Hawaii, Kauai Island.
Type material. MCZ 50080, lectotype. MCZ 298496, paralectotype.
Distribution. Hawaii (Pease 1871; Tryon 1887; Paetel 1888; Johnson 1994).
Remarks. The genus Triphoris is of feminine gender, therefore the name should be Triphoris sulcosa. Lectotype designation by Johnson (1994). Kay (1979: 151) considered T. sulcosa impossible to identify based on the description.
description: Published as part of Bakker, Piet A. J. & Albano, Paolo G., 2022, Nomenclator, geographic and stratigraphic distribution of the family Triphoridae (Mollusca: Gastropoda), pp. 1-216 in Zootaxa 5088 (1) on pages 167-168, DOI: 10.11646/zootaxa.5088.1.1, http://zenodo.org/record/5836536
Amana wanyuensis Honda 1935, sp. nov.
Creators: name: Song, Xiangwen
name: Li, Guangyan
name: Wang, Wei
name: Xu, Tao
name: Gao, Xinyi
name: Han, Bangxing
name: Yi, Shanyong
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Liliales
Liliaceae
Amana

description: Amana wanyuensis B.X.Han,S.Y.Yi & X.W.Song, sp. nov. (ÊDzƺṉ¨) (Figs 2,3)
Type:— CHINA. Anhui Province: Jinzhai County, Luan City, Mt. Jingangtai, 20 Mar 2021, Song SXW210320 (holotype: ACM; isotype: PE).
The new species differs from A. edulis in having an ovoid bulb without a villous interior, a white flower and adaxially greyish leaves that are white in fruit.
Perennial herbs with ovoid bulbs, 1.5–2.5 cm in diameter, tunics brownish, without a villous interior. Stems unbranched, 25–40 cm tall, slender, glabrous. Leaves 2, opposite, needle shaped, green, 20.0–45.0 × 1.5–2.0 cm. Bracts usually 2 or 3, linear, green, 1.5–3 × 0.2–0.5 cm, 3–5 cm under the flower. Flowers mostly 1–5, funnel-shaped; tepals 6, white, with a deep yellow blotch at the base inside, white on the back, outer tepals lanceolate, 1.5–2.5 × 0.3–0.8 cm, inner tepals a little smaller. Stamens 6, in 2 whorls, anthers yellow, 0.3–0.5 cm long, filaments yellowish green, 0.5–0.8 cm long. Ovaries yellowish green, 0.5–1.0 cm long, stigma not oblique. Fruits triquetrous, 2.0–3.0 × 1.5–2.0 cm.
Habitat and distribution:— Primarily in moist, deciduous, broad-leaved forests, 700–1000 meters; documented on the slopes of Jingangtai Mountains, Anhui and Henan Provinces.
Phenology:— Growth initiated February, flowering February–March, fruiting March–April.
Etymology:— Derived from the name of the Jingangtai Mountains, due to the Jingangtai Mountains spanning Anhui and Henan Provinces (ÊDzƺṉ¨).
description: Published as part of Song, Xiangwen, Li, Guangyan, Wang, Wei, Xu, Tao, Gao, Xinyi, Han, Bangxing & Yi, Shanyong, 2024, Amana wanyuensis (Liliaceae), a new species from the Dabieshan Mountains, Anhui Province, China, pp. 289-295 in Phytotaxa 658 (3) on page 291, DOI: 10.11646/phytotaxa.658.3.7, http://zenodo.org/record/13217738
Porrentruy, Bibliothèque cantonale jurassienne, Ms. 4 : Aristoteles, Ethica Nicomachea
Creators: name: Aristoteles
name: Grosseteste, Robertus
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: This manuscript contains a Latin version of Aristotle’s Nicomachean Ethics, translated and glossed by Robert Grosseteste (1175-1253), Bishop of Lincoln. The decoration of monochrome as well as red and blue fleuronné initials at the beginning of the chapters (e.g., 3r) and the colorfully decorated initials at the beginning of the books (e.g., 1r) attest to an origin in Southwestern Germany in the third quarter of the 15th century. The manuscript was originally part of the episcopal library; during the French Revolution it came to the library of the Jesuit College of Porrentruy; in the 20th century it finally became part of the collection of the Library of the Canton of Jura.
description: Online Since: 2014-09-23
Triphora superba Thiele 1925
Creators: name: Bakker, Piet A. J.
name: Albano, Paolo G.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Triphoridae
Triphora
Triphora superba

description: Triphora superba Thiele, 1925
Triphora superba Thiele, 1925: 127 (93), pl. 10, fig. 15.
Trifora cf. superba Thiele, 1925 — Barnard 1963a: 116, fig. 20a.
Type locality. South Africa, near the Agulhasbank, 35°16’S, 22°26’E, 155 m deep.
Type material. ZMB/Moll no. 109266, holotype.
Distribution. South Africa (Thiele 1925; Barnard 1963a; Albano & Bakker 2016).
description: Published as part of Bakker, Piet A. J. & Albano, Paolo G., 2022, Nomenclator, geographic and stratigraphic distribution of the family Triphoridae (Mollusca: Gastropoda), pp. 1-216 in Zootaxa 5088 (1) on page 168, DOI: 10.11646/zootaxa.5088.1.1, http://zenodo.org/record/5836536
Porrentruy, Bibliothèque cantonale jurassienne, Ms. 12 : Dominicus de Sancto Geminiano (?)
Creators: name: Dominicus, de Sancto Geminiano
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: Paper manuscript dated 1457; it contains a register of canon law with glosses, attributed in the codex itself to Dominicus de S. Geminiano.
description: Online Since: 2014-04-09
Porrentruy, Bibliothèque cantonale jurassienne, Ms. 17 : Psalterium-hymnarium basileense
Creators: name: Vincentius, Bellovacensis
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: A 15th century Psalter following the liturgical custom of the Collegiate Church of Saint-Ursanne; in form and content it is a perfect copy of the Basel manuscript AN VIII 39. Both pastedowns consist of fragments of Vincent of Beauvais’ Speculum historiale; on f. 36r there is a 16th century pen drawing of the Virgin Mary. The manuscript remained in the Collegiate Church of Saint-Ursanne until it came into the possession of the Library of the Canton of Jura in the 20th century.
description: Online Since: 2014-09-23
Porrentruy, Bibliothèque cantonale jurassienne, Ms. 18 : Gradual
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: Gradual dating from the 12th century, used by the Prémontré order at the Abbey of Bellelay.
description: Online Since: 2007-04-26
Fribourg/Freiburg, Bibliothèque cantonale et universitaire/Kantons- und Universitätsbibliothek, Ms. L 5 : Vitae et passiones sanctorum
Creators: name: Cono abbas Morimundi
name: Godefridus, Altissiodorensis
name: Robertus, de Sorbona
name: Johannes, Diaconus Neapolitanus
name: Gremaud, Jean
name: Robertus, Helveticus
name: Leontius, Neapolitanus
name: Martin, von Tours
name: Eucherius, Lugdunensis
name: Gregorius, Turonensis
name: Sulpicius, Severus
name: Bertoni, Giulio
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: This collection of hagiographical texts was written by various hands in the second third of the 13th century, probably in Hauterive. The presence of certain texts indicates a Cistercian origin (Vita of St. Robert of Molesme, the author Geoffroy de Hautecombe) and, based on our knowledge of medieval Hauterive, a regional origin (the Vita of St. Theodore, Bishop of Sion; the Vita and the Miracula of Saint Nicholas of Myra; the Vita of St. Elizabeth of Hungary; the Passio of Saint Maurice and his companions by Eucherius of Lyon). The end of the book contains a collection of texts related to confession. The last one of these attests a little know activity of the monks: the pastoral care of the Cistercian nuns. The manuscript remains in its original cover which, although damaged, is still well recognizable: a cover with wide flaps that cover the edges of the book.
description: Online Since: 2014-04-09
Fribourg/Freiburg, Bibliothèque cantonale et universitaire/Kantons- und Universitätsbibliothek, Ms. L 34 : Jacobus de Voragine, Legenda Aurea
Creators: name: Gremaud, Jean
name: Jacobus, de Voragine
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: James of Voragine’s Golden Legend, one of the most copied texts of the Middle Ages, appears here in a meticulous fourteenth-century copy. This copy is particularly noteworthy for its exceptional elegance and the refined stitchwork that fixes defects in the parchment (holes and tears); they bring to mind similar works from the double convent of canons and canonesses at Interlaken. The decoration resembles the output of a Zurich workshop. Little is known of the early history of the manuscript, but it as attested in the Cistercian monastery of Hauterive from at least the seveneenth century.
description: Online Since: 2011-03-31
Fribourg/Freiburg, Bibliothèque cantonale et universitaire/Kantons- und Universitätsbibliothek, Ms. L 84 : Biblia sacra (Isaias-Malachim)
Creators: name: Gremaud, Jean
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: This Cistercian manuscript, datable to the first half of the 13th century, contains only a part of the Old Testament, that is, the Books Isaiah to and including Malachi. This book must have changed libraries for historical reasons. After being held in the Cistercian Abbey Frienisberg in the Canton of Bern, it reached Hauterive when the Bernese Monastery was dissolved during the Protestant Reformation. The last Abbot of Frienisberg, Urs Hirsinger, is said to have arrived at the Fribourg Abbey with a handful of manuscripts.
description: Online Since: 2014-04-09
Fribourg/Freiburg, Bibliothèque cantonale et universitaire/Kantons- und Universitätsbibliothek, Ms. L 293 : Vitae sanctorum . Hugo de Sancto Victore . Fretellus . Moralium dogma philosophorum . Computistica . Interpretationes nominorum hebraicorum
Creators: name: Arnoldus, Bonavallis
name: Godefridus, Altissiodorensis
name: Fretellus
name: Gremaud, Jean
name: Beda, Venerabilis
name: Hugo, de Sancto Victore
name: Guilelmus, de Sancto Theodorico
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: This manuscript contains predominantly hagiographical texts, written in various hands at the beginning of the 13th century. One could reasonably propose that it originated at Hauterive. Without doubt, the text at the beginning of the collection was most important for the monks, a Vita of St. Bernard of Clairvaux (the Vita prima), which takes up the greatest part of the manuscript. Also worth noting is a text quite surprising in a monastic context: the Liber locorum sanctorum terrae Jerusalem at the time of the Latin Kingdom of Jerusalem by Fretellus of Nazareth († after 1154). Another particularity of the manuscript is its binding with flaps that show traces of metalwork in the shape of a star.
description: Online Since: 2014-04-09
Fribourg/Freiburg, Bibliothèque cantonale et universitaire/Kantons- und Universitätsbibliothek, Ms. L 305 : Missale Cisterciense
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: This Cistercian missal, produced around 1300, “represents an already advanced phase in the development of this type of liturgical book: the chants of the gradual are completely integrated into the sacramentary, and are no longer accompanied by musical notes; moreover, they are written in a smaller script. In this form, the missal could have served the celebrant for both the conventual mass and for the private mass that Cistercians are known to have held since their origins. The geographical origin of the codex has not been determined with certainty. Without doubt, however, from the fifteenth century onward it was at Hauterive, where it was re-bound. The rich decoration in the canon section provide a fine example of fleuronné initials from the end of the thirteenth century; here, the decoration of the scrolls seems to be still “domesticated” by rigorous framing.” (Joseph Leisibach, Liturgica Friburgensia. Des Livres pour Dieu, 1993, p. 89).
description: Online Since: 2011-03-31
Fribourg/Freiburg, Bibliothèque cantonale et universitaire/Kantons- und Universitätsbibliothek, Ms. L 516 : Graduale Romanum ad usum fratrum Eremitarum S. Augustini. Sanctorale
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: A fragmentary gradual for the friars of the Order of the Hermits of Saint Haugustine, copied in 1539 by Jacobus Frank, who is depicted in the bottom margin of 51r. It contains many illuminations with coats-of-arms, mottos and monograms written by different hands from 1538 to 1594. Some of the illuminations have been excised and in some cases then glued back in the codex.
description: Online Since: 2011-10-04
Fribourg/Freiburg, Bibliothèque cantonale et universitaire/Kantons- und Universitätsbibliothek, Cap. Rés. 527 : Plutarchus
Creators: name: Jacobus, Angelus de Scarperia
name: Bruni, Leonardo
name: Bruni, Leonardo
name: Plutarchus
name: Xenophon
name: Philelphus, Franciscus
name: Giustiniani, Leonardo
name: Falck, Peter
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: Paper manuscript containing the Parallel Lives of Plutarch in latin translation. The first page features a golden initial on a background of white vine stem decoration, as well as a coat of arms in the bottom margin, perhaps that of Guiniforte Zazzi, Pavia professor of law; on the sides of the coat of arms can be read the name of Peter Falck (†1519), the Fribourg humanist through whom the manuscript reached Fribourg before becoming part of the library of the Capuchins, and, in 2004, of the University Library.
description: Online Since: 2011-10-04
Fribourg/Freiburg, Bibliothèque cantonale et universitaire/Kantons- und Universitätsbibliothek, Ms. L 30 : Breviarium Lausannense
Creators: name: Fontaine, Charles-Aloyse
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: A breviary for the diocese of Lausanne preceded by a psalter. The different parts of the text are introduced by illuminated initials produced in an archaic manner. According to a note at the end of the text, the codex was produced by Magister Gilles around 1400 at the behest of Pierre Frenscher of Montagny, parish priest of Saint Nicholas of Fribourg. Another note records a donation by Frenscher for the altar of Saint Sylvester in the church of Saint Nicholas in Fribourg.
description: Online Since: 2011-10-04
Triphoris suturalis A. Adams & Reeve 1850
Creators: name: Bakker, Piet A. J.
name: Albano, Paolo G.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Triphoridae
Triphoris
Triphoris suturalis

description: Triphoris suturalis A. Adams & Reeve, 1850
Triphoris suturalis A. Adams & Reeve, 1850: 45, pl. 11, fig. 29A–B.
Triforis suturalis A. Adams & Reeve, 1850 — Tryon 1887: 183, pl. 38, fig. 20.
Triphora suturalis A. Adams & Reeve, 1850 — Kuroda & Habe 1952: 91.
Type locality. China Sea.
Type material. NHMUK 196513 is not considered a type specimen (Albano et al. 2019).
Distribution. China Sea (Adams & Reeve 1850; Tryon 1887; Paetel 1888; Hidalgo 1905; Albano et al. 2019), Japan (Kuroda & Habe 1952; Higo et al. 1999), Philippines (Hidalgo 1905).
Remarks. This species is considered a nomen dubium by Albano et al. 2019.
description: Published as part of Bakker, Piet A. J. & Albano, Paolo G., 2022, Nomenclator, geographic and stratigraphic distribution of the family Triphoridae (Mollusca: Gastropoda), pp. 1-216 in Zootaxa 5088 (1) on page 168, DOI: 10.11646/zootaxa.5088.1.1, http://zenodo.org/record/5836536
Decoding temporal thermogenesis: coregulator selectivity and transcriptional control in brown and beige adipocytes
Creators: name: Jeon, Yong Geun
name: Kim, Sun Won
name: Kim, Jae Bum
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Plant Biology
subject: Computational Biology

description: In mammals, brown adipose tissue (BAT) and beige adipocytes in white adipose tissue (WAT) play pivotal roles in maintaining body temperature and energy metabolism. In mice, BAT quickly stimulates thermogenesis by activating brown adipocytes upon cold exposure. In the presence of chronic cold stimuli, beige adipocytes are recruited in inguinal WAT to support heat generation. Accumulated evidence has shown that thermogenic execution of brown and beige adipocytes is regulated in a fat depot-specific manner. Recently, we have demonstrated that ubiquitin ligase ring finger protein 20 (RNF20) regulates brown and beige adipocyte thermogenesis through fat-depot-specific modulation. In BAT, RNF20 regulates transcription factor GA-binding protein alpha (GABPα), whereas in inguinal WAT, RNF20 potentiates transcriptional activity of peroxisome proliferator-activated receptor-gamma (PPARγ) through the degradation of nuclear corepressor 1 (NCoR1). This study proposes the molecular mechanisms by which co-regulator(s) selectively and temporally control transcription factors to coordinate adipose thermogenesis in a fat-depot-specific manner. In this Commentary, we provide molecular features of brown and beige adipocyte thermogenesis and discuss the underlying mechanisms of distinct thermogenic processes in two fat depots.
Fribourg/Freiburg, Bibliothèque cantonale et universitaire/Kantons- und Universitätsbibliothek, Ms. L 37 : Boetius
Creators: name: Gremaud, Jean
name: Boethius, Anicius Manlius Severinus
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: Few works of antiquity had as profound an influence on the Middle Ages as did Boethius’ De Consolatione Philosophiae. This exemplar contains valuable information which allows it to be placed in an interesting historical context. The Fribourg cleric Pierre Guillomin finished copying the manuscript on Christmas Eve 1447 in Dijon. The colophon, which states these details, also names the recipient of the manuscript, Jacques Trompettaz († 1503), a compatriot of the copyist. The latter was careful to include in several passages of the text, in addition to his own name and that of the addressee, the names of two more Fribourg friends, Claude de Gruyère and Jacques Sutz, Monk at Hauterive.
description: Online Since: 2014-04-09
Fribourg/Freiburg, Bibliothèque cantonale et universitaire/Kantons- und Universitätsbibliothek, Ms. L 145 : Johannes de Paltz
Creators: name: Karker, Franz Xaver
name: Johannes, von Paltz
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: This quaestio disputata by the Augustinian Johannes of Paltz (around 1445-1511) is a perfect illustration of the working methods of medieval scholasticism. The manuscript was written in Erfurt in the summer of 1486 and has as its topic the refutation of three errors. The first regards those who claim “to be able to calculate and foresee the Last Judgment.” It seems that this document is the only handwritten version of this text, which is known through two printed editions from the 15th century. Franz Xaver Karker (1812-1892), Canon of the Cathedral of Breslau (today Wroclaw in Poland), donated this work to the Fribourg library.
description: Online Since: 2014-04-09
Fribourg/Freiburg, Bibliothèque cantonale et universitaire/Kantons- und Universitätsbibliothek, Ms. L 158 : Missale cisterciense
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: Probably written around 1200 in Hauterive, this Cistercian missal has recently attracted the attention of historians who study St. Elizabeth of Hungary (1207-1231). Together with another manuscript from Hauterive, the antiphonary L 301, this manuscript is considered evidence of the rapid spread of the cult of the saint in a Cistercian monastery. Indeed, the general chapter of the Cistercians decided in 1236 to have the name of the saint, who was canonized the previous year, entered into the martyrology and into the calendar of the order. The corresponding entry in our manuscript’s calendar, by a second hand, is probably a consequence of this decision.
description: Online Since: 2014-04-09
Isotriphora taenialba Rolan & Espinosa 1994
Creators: name: Bakker, Piet A. J.
name: Albano, Paolo G.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Triphoridae
Isotriphora
Isotriphora taenialba

description: Isotriphora taenialba Rolán & Espinosa, 1994
Isotriphora taenialba Rolán & Espinosa, 1994: 64, fig. 4–10.
Type locality. Cuba, Cienfuegos Bay, 10–30 m deep.
Type material. MNCN 15.05/11140, holotype. MNHN-IM-2000-1514, NHMUK 1993060, RMNH.MOL. 56850 and ZMA.MOLL. 136648, paratypes.
Distribution. Cuba (Rolán & Espinosa 1994; Espinosa et al. 2007; Díaz & Miloslavich 2010; Espinosa et al. 2012; García 2016; Albano et al. 2019; Bakker 2021).
description: Published as part of Bakker, Piet A. J. & Albano, Paolo G., 2022, Nomenclator, geographic and stratigraphic distribution of the family Triphoridae (Mollusca: Gastropoda), pp. 1-216 in Zootaxa 5088 (1) on page 168, DOI: 10.11646/zootaxa.5088.1.1, http://zenodo.org/record/5836536
Fribourg/Freiburg, Bibliothèque cantonale et universitaire/Kantons- und Universitätsbibliothek, Ms. L 303 : Amedeus Lausannensis; Henricus Abbas Altae Cristae
Creators: name: Henricus, Abbas Altae Cristae
name: Amadeus, Lausanensis
name: Gremaud, Jean
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: The colophon at the end of the manuscript establishes with certitude that it was copied at the Cistercian abbey of Hauterive during the thirteenth century. Its author, or the one who commissioned the work, dobutless wanted to “gather together the works of two Cistercian authors who exercised important functions in the region: Henry, Abbot of the neighboring monastery of Hautcrêt, and Amadeus, bishop of the diocese of Lausanne” (from Ciardo). Henry, whose biography is still a subject of debate, chose the learned title Pentaconthamonadius (“the fifty-first”) to designate a sermonary composed of 17 groups of three sermons intended for the liturgy of the White monks. Amadeus of Clermont, a Cistercian monk who became bishop of Lausanne (1145-1159), is the author of eight homilies in honor of the Mother of God, which achieved lasting success as liturgical texts because used in the breviary of the diocese of Lausanne.
description: Online Since: 2011-03-31
Triforis (Mastonia) taeniolata Hervier 1898
Creators: name: Bakker, Piet A. J.
name: Albano, Paolo G.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Triphoridae
Triforis
Triforis taeniolata

description: Triforis (Mastonia) taeniolata Hervier, 1898
Triforis (Mastonia) taeniolata Hervier, 1898: 258.
Trifora taeniolata Hervier, 1898 — Viader 1937: 43.
Triphora taeniolata Hervier, 1898 — Marshall 1983: fig. 28h–j.
Triforis taeniolata Hervier, 1898 — Héros et al. 2007: 220.
Type locality. New Caledonia, Lifou.
Type material. MNHN-IM-2000-1249, syntype.
Distribution. Australia (Marshall 1983; Chang & Wu 2005), Fiji (Chang & Wu 2005), Gulf of Aqaba (Blatterer 2019), Japan (Okutani 2000; Chang & Wu 2005; Dumrongrojwattana et al. 2016; Okutani 2017), Marshall Islands (Kay & Johnson 1987), Mauritius (Viader 1937), New Caledonia (Hervier 1898; Hervier 1899; Héros et al. 2007), Philippines (Poppe 2008), Taiwan (Dumrongrojwattana et al. 2016), Thailand (Dumrongrojwattana et al. 2016; Dumrongrojwattana & Tanamai 2020; Wells et al. 2021).
Remarks. Marshall (1983) considered Triphora eupunctata G.B. Sowerby III, 1907 a junior synonym of Triforis (Mastonia) taeniolata Hervier, 1898. Kosuge (1965) and Marshall (1983) considered Coriophora monovitta Laseron, 1958 a junior synonym of Triforis (Mastonia) taeniolata Hervier, 1898.
description: Published as part of Bakker, Piet A. J. & Albano, Paolo G., 2022, Nomenclator, geographic and stratigraphic distribution of the family Triphoridae (Mollusca: Gastropoda), pp. 1-216 in Zootaxa 5088 (1) on page 168, DOI: 10.11646/zootaxa.5088.1.1, http://zenodo.org/record/5836536
A comparative assessment of reference genes in mouse brown adipocyte differentiation and thermogenesis in vitro
Creators: name: Lai, Trang Huyen
name: Hwang, Jin Seok
name: Ngo, Quang Nhat
name: Lee, Dong-Kun
name: Kim, Hyun Joon
name: Kim, Deok Ryong
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy
subject: Computational Biology

description: Adipogenic differentiation and thermogenesis in brown adipose tissue (BAT) undergo dynamic processes, altering phenotypes and gene expressions. Proper reference genes in gene expression analysis are crucial to mitigate experimental variances and ensure PCR efficacy. Unreliable reference genes can lead to erroneous gene expression quantification, resulting in data misinterpretation. This study focused on identifying suitable reference genes for mouse brown adipocyte research, utilizing brown adipocytes from the Ucp1-luciferase ThermoMouse model. Comparative analysis of gene expression data under adipogenesis and thermogenesis conditions was conducted, validating 13 housekeeping genes through various algorithms, including DeltaCq, BestKeeper, geNorm, Normfinder, and RefFinder. Tbp and Rer1 emerged as optimal references for Ucp1 and Pparg expression in brown adipogenesis, while Tbp and Ubc were ideal for the expression analysis of these target genes in thermogenesis. Conversely, certain conventional references, including Actb, Tubb5, and Gapdh, proved unstable as reference genes under both conditions. These findings stress the critical consideration of reference gene selection in gene expression analysis within specific biological systems to ensure accurate conclusions.
Fribourg/Freiburg, Bibliothèque cantonale et universitaire/Kantons- und Universitätsbibliothek, Ms. L 308 : Otto von Passau, Die vierundzwanzig Alten
Creators: name: Fontaine, Charles-Aloyse
name: Gremaud, Jean
name: Otto, von Passau
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: The work „Die vierundzwanzig Alten“ constitutes a sort of guide to Christian life, and, at the time of its composition, the author, Otto von Passau, belonged to the Franciscan convent of Basel. This copy was written in the second half of the 15th century in a dialect used in the upper Rhine region. Unfortunately, the spaces for illustrations at the beginning of the 24 speeches have been left blank.
description: Online Since: 2011-10-04
Fribourg/Freiburg, Bibliothèque cantonale et universitaire/Kantons- und Universitätsbibliothek, Ms. L 523 : Antiphonarium Cisterciense, Temporale
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: This manuscript, copied in an unknown location during the first half of the fourteenth century, provides a beautiful example of a Cistercian antiphony with notes (only the Proprium de tempore is preserved here): an elegant script with widely spaced lines facilitates readability, the musical notes, in square notation, are organized according to a four-line system, and the text is richly decorated with fleuronné initials and droleries. Fragments from a twelfth-century Bible are bound into the beginning of the manuscript and are valuable witnesses for paleographical study of the earliest manuscripts produced by the Cistercians of Hauterive.
description: Online Since: 2011-03-31
Triforis tasmanica Tenison Woods 1876
Creators: name: Bakker, Piet A. J.
name: Albano, Paolo G.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Triphoridae
Triforis
Triforis tasmanica

description: Triforis tasmanica Tenison Woods, 1876
Triforis tasmanica Tenison Woods, 1876: 28.
Triforis tasmanicus Tenison Woods, 1876 — Paetel 1888: 350.
Triphora tasmanica Tenison Woods, 1876 — Hedley 1903: 612, pl. 32, fig. 22.
Isotriphora tasmanica (Tenison Woods, 1876) — Cotton & Godfrey 1931: 52, pl. 1, fig. 3.
Type locality. Australia, Tasmania, Long Bay, dredged.
Type material. TMAG E.534a, lectotype.
Distribution. Australia (Hedley 1903; Verco 1909; Hedley 1918; Cotton & Godfrey 1931; Cotton 1932; Laseron 1954; Marshall 1983; Wilson 1994), Australia, Tasmania (Tenison Woods 1876; Tryon 1887; Paetel 1888; Tate & May 1901; May 1921; May 1923; May 1958; Marshall 1983).
Remarks. Lectotype designation by Marshall (1983). Marshall (1983) considered that apart from having more numerous axial costae and smaller nodules, Isotriphora echina Laseron, 1954 is indistinguishable from Triforis tasmanica Tenison Woods, 1876.
description: Published as part of Bakker, Piet A. J. & Albano, Paolo G., 2022, Nomenclator, geographic and stratigraphic distribution of the family Triphoridae (Mollusca: Gastropoda), pp. 1-216 in Zootaxa 5088 (1) on pages 168-169, DOI: 10.11646/zootaxa.5088.1.1, http://zenodo.org/record/5836536
Fribourg/Freiburg, Bibliothèque cantonale et universitaire/Kantons- und Universitätsbibliothek, Ms. L 1200 : Alain Chartier; Baudet Herenc; Achille Caulier; Hans Rosenplüt
Creators: name: Diesbach, Max de
name: Chartier, Alain
name: Rosenplüt, Hans
name: Herenc, Baudet
name: Caulier, Achille
Publisher: name: e-codices - Virtual Manuscript Library of Switzerland
Year: 2024

description: A composite codex of paper produced at Fribourg in the first half of the 15th century. In the first part, in addition to some short texts in German, it contains the Cycle de la belle dame sans mercy by Alain de Chartier, Baudet Herenc and Achille Caulier, a French poem in octaves on courtly love written ca. 1424. The second part has a copy of another verse poem by Chartier: Le Livre des quatre dames.
description: Online Since: 2011-10-04