cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1: of Patterns of perspectives on fall-prevention beliefs by community-dwelling older adults: a Q method investigation
Creators: name: Shueh-Fen Chen
name: Su-Fei Huang
name: Lu, Li-Ting
name: Mei-Chuen Wang
name: Jung-Yu Liao
name: Jong-Long Guo
Publisher: name: Figshare
Year: 2016
Subjects: subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Science Policy

description: Q-sorting data. (DOCX 14Â kb)
Local Conditions for Global Convergence of Gradient Flows and Proximal Point Sequences in Metric Spaces
Creators: name: Schiavo, Lorenzo Dello
name: Maas, Jan
name: Pedrotti, Francesco
Publisher: name: arXiv
Year: 2023
Subjects: subject: Optimization and Control (math.OC)
subject: FOS: Mathematics
subject: 45J05, 49Q20 (Primary) 39B62, 37N40, 49J52, 65K10 (Secondary)

description: This paper deals with local criteria for the convergence to a global minimiser for gradient flow trajectories and their discretisations. To obtain quantitative estimates on the speed of convergence, we consider variations on the classical Kurdyka--Łojasiewicz inequality for a large class of parameter functions. Our assumptions are given in terms of the initial data, without any reference to an equilibrium point. The main results are convergence statements for gradient flow curves and proximal point sequences to a global minimiser, together with sharp quantitative estimates on the speed of convergence. These convergence results apply in the general setting of lower semicontinuous functionals on complete metric spaces, generalising recent results for smooth functionals on $\mathbb{R}^n$. While the non-smooth setting covers very general spaces, it is also useful for (non)-smooth functionals on $\mathbb{R}^n$.
description: 22 pages, 3 figures
Detection of Fake Generated Scientific Abstracts
Creators: name: Theocharopoulos, Panagiotis C.
name: Anagnostou, Panagiotis
name: Tsoukala, Anastasia
name: Georgakopoulos, Spiros V.
name: Tasoulis, Sotiris K.
name: Plagianakos, Vassilis P.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Computation and Language (cs.CL)
subject: FOS: Computer and information sciences

description: The widespread adoption of Large Language Models and publicly available ChatGPT has marked a significant turning point in the integration of Artificial Intelligence into people's everyday lives. The academic community has taken notice of these technological advancements and has expressed concerns regarding the difficulty of discriminating between what is real and what is artificially generated. Thus, researchers have been working on developing effective systems to identify machine-generated text. In this study, we utilize the GPT-3 model to generate scientific paper abstracts through Artificial Intelligence and explore various text representation methods when combined with Machine Learning models with the aim of identifying machine-written text. We analyze the models' performance and address several research questions that rise during the analysis of the results. By conducting this research, we shed light on the capabilities and limitations of Artificial Intelligence generated text.
Course of the sFlt-1/PlGF ratio in fetal growth restriction and correlation with biometric measurements, feto-maternal Doppler parameters and time to delivery
Creators: name: Andrikos, A.
name: Andrikos, D.
name: Schmidt, B.
name: Birdir, C.
name: Kimmig, R.
name: Gellhaus, A.
name: Köninger, A.
Publisher: name: Universität Regensburg
Year: 2021
Subjects: subject: ANGIOGENIC FACTORS; TYROSINE KINASE-1; PREDICTION; DIAGNOSIS; PREECLAMPSIA; PREGNANCY; FEMUR; CLASSIFICATION; HYPERTENSION; ASSOCIATION; Fetal growth restriction; sFlt-1; PlGF; Soluble Fms-like tyrosine kinase 1; Placental growth factor; Time to delivery; Feto-maternal Doppler parameters
subject: 610 Medizin

description: Purpose 
The study aimed to assess the course of the soluble Fms-like tyrosine kinase 1 (sFlt-1)/placental growth factor (PlGF) ratio in pregnant women with fetal growth restriction (FGR) and to evaluate potential associations between the sFlt-1/PlGF ratio and feto-maternal Doppler parameters, fetal biometric measurements and the time between study inclusion and birth ("time to delivery"). 

Methods 
This was a retrospective longitudinal single center study including 52 FGR cases. The serum levels of sFlt-1 and PlGF were measured by using the BRAHMS Kryptor Compact PLUS. Fetal biometric and Doppler parameters, as well as the sFlt-1/PlGF ratio, were obtained both upon study inclusion and upon birth. 

Results 
Various associations between the levels of the biomarkers in maternal blood upon study inclusion and upon birth and sonographic parameters were observed in FGR cases: umbilical artery (p < 0.01), uterine arteries (p < 0.01), ductus venosus (p < 0.05), cerebroplacental ratio (CPR) (p < 0.01), femur length (p < 0.01) and birth weight (p < 0.01). The higher the sFlt-1/PlGF ratio upon study inclusion, the shorter the "time to delivery" (p < 0.01). The multivariate regression analysis showed that the greater the daily percentage increase of the angiogenic markers, the shorter the "time to delivery" (p < 0.01). 

Conclusion 
The fetal well-being, as measured by feto-maternal Doppler parameters such as CPR and the severity of the placental dysfunction, as measured by the urgency of birth and birth weight, is reflected by the level of the sFlt-1/PlGF ratio in the maternal serum. A rapid daily increase of the sFlt-1/PlGF ratio is significantly associated with the clinical progression of the disease.
Additional file 1: Table S1. of Gene expression comparison reveals distinct basal expression of HOX members and differential TNF-induced response between brain- and spinal cord-derived microvascular endothelial cells
Creators: name: Molino, Yves
name: Jabès, Françoise
name: Bonnet, Amandine
name: Gaudin, Nicolas
name: Bernard, Anne
name: Benech, Philippe
name: Khrestchatisky, Michel
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: TNF-α modulated expression of genes involved in the TNF-α signaling pathway in BMECs and SCMECs. (DOC 53 kb)
Tayassuidae Palmer 1897
Creators: name: Don E. Wilson
name: Russell A. Mittermeier
Publisher: name: Lynx Edicions
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Artiodactyla
Tayassuidae

description: Family TAYASSUIDAE
(PECCARIES)
• Medium-sized mammals with generally muscular body, large head, elongated, mobile snout ending with nostrils in flat cartilaginous disk, prominent, erect, and rounded ears, robust jaws with long canines, medium to long limbs, and vestigial tail.
• 80-140 cm.
• Nearctic and Neotropical Regions.
• Variety of habitats, including desert, thorn scrub, savanna, and dry and moist forests; from temperate to tropical zones.
• 3 genera, 3 species, 20 taxa.
• 1 species Endangered; none Extinct since 1600.
description: Published as part of Don E. Wilson & Russell A. Mittermeier, 2011, Tayassuidae, pp. 292-307 in Handbook of the Mammals of the World – Volume 2 Hoofed Mammals, Barcelona :Lynx Edicions on page 292, DOI: 10.5281/zenodo.5720788
Additional file 14: Table S10. of Genome-wide identification and characterization of auxin response factor (ARF) family genes related to flower and fruit development in papaya (Carica papaya L.)
Creators: name: Kaidong Liu
name: Changchun Yuan
name: Haili Li
name: Wanhuang Lin
name: Yanjun Yang
name: Chenjia Shen
name: Xiaolin Zheng
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: Primer sequences for qRT-PCR of CpARF family genes. (DOCX 17Â kb)
The stability region for Schur stable trinomials with general complex coefficients
Creators: name: Barrera, Gerardo
name: Barrera, Waldemar
name: Navarrete, Juan Pablo
Publisher: name: arXiv
Year: 2023
Subjects: subject: Complex Variables (math.CV)
subject: Classical Analysis and ODEs (math.CA)
subject: Dynamical Systems (math.DS)
subject: FOS: Mathematics
subject: Primary 12D10, 26C10, 30C15, Secondary 93D23, 11B37

description: In this paper, we characterize the stability region for trinomials of the form $f(ζ):=aζ^n + bζ^m +c$, $ζ\in \mathbb{C}$, where $a$, $b$ and $c$ are non-zero complex numbers and $n,m\in \mathbb{N}$ with $n>m$. More precisely, we provide necessary and sufficient conditions on the coefficients $a$, $b$ and $c$ in order that all the roots of the trinomial $f$ belongs to the open unit disc in the complex plane. The proof is based on Bohl's Theorem introduced in 1908.
description: 28 pages and 2 figures
Bibliografia di Giuliano Marini su virmap.unipi.it
Creators: name: Marini, Giuliano
Publisher: name: Zenodo
Year: 2004

description: Si tratta della bibliografia delle ultime opere pubblicate da Giuliano Marini, aggiornata al 2004. Il sito https://virmap.unipi.it/cgi-bin/virmap/vmibo?docenti:8134124;stampapubblicazioni;pubbl_elem non esiste più.
Additional file 1: of Patient question set proliferation: scope and informatics challenges of patient question set management in a large multispecialty practice with case examples pertaining to tobacco use, menopause, and Urology and Orthopedics specialties
Creators: name: Loo, Sarah Vande
name: North, Frederick
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biotechnology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Potential repeated questions for a menopausal woman. Data gathered through an analysis of six patient question sets targeted toward menopausal women that shows the potential of repetitious questions. (PDF 27Â kb)
Additional File 2:
Creators: name: Peters, Paul
name: Gonzalez-Perez, Maria
name: Musich, Thomas
name: Simas, Tiffany Moore
name: Rongheng Lin
name: Morse, Abraham
name: Shattock, Robin
name: Derdeyn, Cynthia
name: Clapham, Paul
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: Figure S2. T-cells are the major cell type infected among cells that have emigrated from ectocervical explants. Emigrant cells from PHA/IL-2 stimulated, infected explant cultures were subjected to positive selection of T-cells (A) or negative selection for monocytes and macrophages (B) using StemCell Technologies EasySep immunomagnetic kits.
Additional file 2: Figure S1. of The anti-oxidative transcription factor Nuclear factor E2 related factor-2 (Nrf2) counteracts TGF-β1 mediated growth inhibition of pancreatic ductal epithelial cells -Nrf2 as determinant of pro-tumorigenic functions of TGF-β1
Creators: name: Genrich, Geeske
name: Kruppa, Marcus
name: Lenk, Lennart
name: Helm, Ole
name: Broich, Anna
name: Freitag-Wolf, Sandra
name: Röcken, Christoph
name: Sipos, Bence
name: Schäfer, Heiner
name: Sebens, Susanne
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Nrf2 hardly impact on basal and TGF-β1 induced apoptosis in pancreatic ductal epithelial cells. H6c7-pBp and H6c7-kras cells were transfected either with (A) a control vector (pcDNA3.1) or Nrf2-HA or (B) control siRNA or Nrf2 siRNA. Then, cells were either left untreated or were treated with 10 ng/ml TGF-β1 for 48 h. Cells were detached and one part was used for determining caspase-3/7 activity. The other part was used for cell counting and normalization of caspase-3/7 activity. Then, these cells were lysed in Laemmli buffer and analysed for PARP (full length 116 kD form and cleaved 89 kD form) by western blotting. Hsp90 was detected as loading control. One representative result is shown. (PDF 159 kb)
Quantum MAC: Genuine Entanglement Access Control via Many-Body Dicke States
Creators: name: Illiano, Jessica
name: Caleffi, Marcello
name: Viscardi, Michele
name: Cacciapuoti, Angela Sara
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Multipartite entanglement plays a crucial role for the design of the Quantum Internet, due to its peculiarities with no classical counterpart. Yet, for entanglement-based quantum networks, a key open issue is constituted by the lack of an effective entanglement access control (EAC) strategy for properly handling and coordinating the quantum nodes in accessing the entangled resource. In this paper, we design a quantum-genuine entanglement access control (EAC) to solve the contention problem arising in accessing a multipartite entangled resource. The proposed quantum-genuine EAC is able to: i) fairly select a subset of nodes granted with the access to the contended resource; ii) preserve the privacy and anonymity of the identities of the selected nodes; iii) avoid to delegate the signaling arising with entanglement access control to the classical network. We also conduct a theoretical analysis of noise effects on the proposed EAC. This theoretical analysis is able to catch the complex noise effects on the EAC through meaningful parameters.
Additional file 1: of Infection of ectocervical tissue and universal targeting of T-cells mediated by primary non-macrophage-tropic and highly macrophage-tropic HIV-1 R5 envelopes
Creators: name: Peters, Paul
name: Gonzalez-Perez, Maria
name: Musich, Thomas
name: Simas, Tiffany Moore
name: Rongheng Lin
name: Morse, Abraham
name: Shattock, Robin
name: Derdeyn, Cynthia
name: Clapham, Paul
Publisher: name: Figshare
Year: 2015
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Physiology
subject: Immunology
subject: FOS: Clinical medicine
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Figure S1. GFP+ infected cells in ectocervical explants become visible by day 6. GFP+ infected cells in a BaL infected ectocervical explant are clearly visible at day 6, but not at day 2 or 3.
Additional file 1: Figure S2. of The anti-oxidative transcription factor Nuclear factor E2 related factor-2 (Nrf2) counteracts TGF-β1 mediated growth inhibition of pancreatic ductal epithelial cells -Nrf2 as determinant of pro-tumorigenic functions of TGF-β1
Creators: name: Genrich, Geeske
name: Kruppa, Marcus
name: Lenk, Lennart
name: Helm, Ole
name: Broich, Anna
name: Freitag-Wolf, Sandra
name: Röcken, Christoph
name: Sipos, Bence
name: Schäfer, Heiner
name: Sebens, Susanne
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer

description: Nrf2 modulates MAPK and Smad signaling in benign, premalignant and malignant pancreatic ductal epithelial cells. A + B) H6c7-pBp and H6c7-kras cells were transfected with a control vector (pcDNA3.1) or Nrf2-HA or (C + D) H6c7-pBp, H6c7-kras and Colo357 cells were transfected either with control siRNA or Nrf2 siRNA. Then, cells were either left untreated or were treated with 10 ng/ml TGF-β1 for 48 h. A + C) Densitometric analysis of p-p38, p-Smad3, p-Erk and p21 expression normalised to Hsp90 expression in the indicated samples. Data are presented as mean ± SD of three independent experiments. B + D) Representative western blots of 3-4 independent experiments showing expression of phosphorylated and total p38 (p-/t-p38), phosphorylated Smad3 (p-Smad3 marked by arrow) and total-Smad3 (t-Smad3 marked by arrow) and phosphorylated and total Erk (p-/t-Erk). Hsp90 was detected as loading control. Numbers above each band indicate average band intensities determined by densitometry. Values of phosphorylated proteins were divided by the values of the corresponding total protein. Nrf2 overexpression was confirmed by detecting the HA-tag of recombinant Nrf2 (see Fig. 3a) and siRNA mediated suppression of endogenous Nrf2 was confirmed by detection of total-Nrf2 (t-Nrf2, see Fig. 3b). (PDF 273 kb)
Signature of long-ranged spin triplets across a two-dimensional superconductor/helimagnet van der Waals interface
Creators: name: Spuri, Alfredo
name: Nikolić, Danilo
name: Chakraborty, Subrata
name: Klang, Maya
name: Alpern, Hen
name: Millo, Oded
name: Steinberg, Hadar
name: Belzig, Wolfgang
name: Scheer, Elke
name: Di Bernardo, Angelo
Publisher: name: arXiv
Year: 2023
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The combination of a superconductor with a magnetically inhomogeneous material has been established as an efficient mechanism for the generation of long-ranged spin-polarized (spin-triplet) Cooper pairs. Evidence for this mechanism, however, has been established based on studies done on three-dimensional systems, where the strong bonds existing at the interface between the superconductor and the magnetic material should in principle enhance proximity effects and strengthen any electronic correlations. Here, we fabricate devices based on van der Waals stacks of flakes of the two-dimensional superconductor $NbS_2$ combined with flakes of $Cr_{1/3}NbS_2$, which has a built-in magnetic inhomogeneity due to its helimagnetic spin texture at low temperatures. We find that the critical temperature of these vdW bilayers is strongly dependent on the magnetic state of $Cr_{1/3}NbS_2$, whose degree of magnetic inhomogeneity can be controlled via an applied magnetic field. Our results demonstrate evidence for the generation of long-ranged spin-triplet pairs across the $Cr_{1/3}NbS_2$/$NbS_2$ vdW interface.
description: 13 pages, 3 figures
Current practice of concomitant surgeries in cartilage repair of the femorotibial compartment of the knee: baseline data of 4968 consecutive patients from the German cartilage registry (KnorpelRegister DGOU)
Creators: name: Zellner, Johannes
name: Faber, Svea
name: Spahn, Gunter
name: Zinser, Wolfgang
name: Niemeyer, Philipp
name: Angele, Peter
Publisher: name: Universität Regensburg
Year: 2021
Subjects: subject: Cartilage treatment knee, Concomitant surgery, Comorbidity, Osteotomy, Instability, Meniscus
subject: 610 Medizin

description: Introduction
The treatment of underlying comorbidities is a field of rising interest in cartilage repair surgery. The aim of this study was to analyze the current practice of concomitant surgeries in cartilage repair of the knee especially in the medial or lateral femorotibial compartment. Type, frequency and distribution of additional surgeries for correction of malalignment, knee instability and meniscus deficiency should be evaluated.
Methods
Baseline data of 4968 patients of the German Cartilage Registry (KnorpelRegister DGOU) were analyzed regarding the distribution of concomitant surgeries in addition to regenerative cartilage treatment.
Results
Beyond 4968 patients 2445 patients with cartilage defects in the femorotibial compartment of the knee could be identified. Of these patients 1230 (50.3%) received additional surgeries for correction of malalignment, instability and meniscus deficiency. Predominant procedures were leg axis corrections (31.3%), partial meniscectomy (20.9%) and ACL reconstruction (13.4%). The distribution of the concomitant surgeries varied between cartilage defects according to the different defect genesis. Patients with traumatic defects were younger (36y) and received predominantly ACL reconstructions (29.2%) (degenerative: 6.7%), whereas patients with degenerative defects were older (43y) and underwent predominantly leg axis corrections (38.0%; traumatic: 11.0%).
Conclusions
This study shows the high frequency and distinct distribution of the concomitant surgeries in addition to regenerative cartilage treatment procedures. Understanding of the underlying cause of the cartilage defect and addressing the comorbidities as a whole joint therapy are of utmost importance for a successful regenerative cartilage treatment. These data provide a baseline for further follow up evaluations and long-term outcome analysis.
Level of evidence II.
On a class of elliptic orthogonal polynomials and their integrability
Creators: name: Desiraju, Harini
name: Latimer, Tomas Lasic
name: Roffelsen, Pieter
Publisher: name: arXiv
Year: 2023
Subjects: subject: Classical Analysis and ODEs (math.CA)
subject: Mathematical Physics (math-ph)
subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: FOS: Mathematics
subject: FOS: Physical sciences

description: Building upon the recent works of Bertola; Fasondini, Olver and Xu, we define a class of orthogonal polynomials on elliptic curves and establish a corresponding Riemann-Hilbert framework. We then focus on the special case, defined by a constant weight function, and use the Riemann-Hilbert problem to derive recurrence relations and differential equations for the orthogonal polynomials. We further show that the sub-class of even polynomials is associated to the elliptic form of Painlevé VI, with the tau function given by the Hankel determinant of even moments, up to a scaling factor. The first iteration of these even polynomials relates to the special case of Painlevé VI studied by Hitchin in relation to self-dual Einstein metrics.
description: 31 pages, 6 figures
Dendronereis Peters 1854
Creators: name: Hsueh, Pan-Wen
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Polychaeta
Phyllodocida
Nereididae
Dendronereis

description: Genus Dendronereis Peters, 1854, emended
Dendronereis Peters, 1854: 612.— Fauvel, 1932: 85.— Fauchald, 1977, 88.— Misra, 1999, 154.
Type species. Dendronereis arborifera Peters, 1854
Diagnosis (new feature from the present species highlighted in bold). Prostomium deeply split anteriorly, two pairs of antennae, and biarticulate palps. Peristomium with four pairs of tentacular cirri. Eversible pharynx smooth or with papillae. Parapodia of chaetigers 1 and 2 sub-biramous, notopodia with only notopodial dorsal ligules, subsequent chaetigers biramous. Notopodial prechaetal lobe present. Branchiae present as subdivisions of the dorsal cirri, bipinnate or pinnate. Neuropodia with multifid acicular lobes in anterior chaetigers. Notopodial chaetae homogomph and hemigomph (=sesquigomph) spinigers. Neuropodial chaetae homogomph spinigers with or without blunt-tipped short blades.
Remarks. Misra (1999) included hemigomph spinigers, as defined by Fauchald (1977), to the generic diagnosis in order to accommodate a newly described species of the genus. Hutching & Reid (1990) referred “hemigomph” as sesquigomph for defining chaetae with a 3:2 ratio between the boss and opposing prong of the shaft.
Of the four species currently in the genus only D. aestuarina and D. pinnaticirris have been reported from East and Southeast Asia (Pillai 1965; Sun and Yang 2004; Chang 2009; Salazar-Vallejo et al. 2014; Glasby et al. 2016). In Taiwan, D. pinnaticirris is listed on the website of the Taiwan Biodiversity Information Facility (TaiBIF) but has not been formally reported. This record might correspond with the species described below.
description: Published as part of Hsueh, Pan-Wen, 2019, Two new species of nereidids (Annelida, Polychaeta) from Taiwan, pp. 544-556 in Zootaxa 4652 (3) on page 545, DOI: 10.11646/zootaxa.4652.3.10, http://zenodo.org/record/3364932
Neanthes Kinberg 1865
Creators: name: Hsueh, Pan-Wen
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Polychaeta
Phyllodocida
Nereididae
Neanthes

description: Genus Neanthes Kinberg, 1865, emended
Type-species. Neanthes vaalii Kinberg, 1865 (subsequent designation)
description: Published as part of Hsueh, Pan-Wen, 2019, Two new species of nereidids (Annelida, Polychaeta) from Taiwan, pp. 544-556 in Zootaxa 4652 (3) on page 551, DOI: 10.11646/zootaxa.4652.3.10, http://zenodo.org/record/3364932
Additional file 2: of A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels
Creators: name: Monaco, Gianni
name: Sipko Van Dam
name: Ribeiro, João Casal Novo
name: Larbi, Anis
name: Magalhães, João De
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Supplementary figures and tables. Figure S1: Comparison of thresholds to retrieve the number of commonly co-expressed genes (CCG). Figure S2: The dN/dS ratio is plotted against the number of commonly co-expressed genes (CCG) for each homolog. Figure S3: Log-log plots of the degree distributions of human and mouse networks. Figure S4: Network connectivity in different categories of genes based on homology relationship in mouse and human. Figure S5: Parameters used to define the evolutionary changes that occur in a gene set between humans and mice. Table S1: List of commonly co-expressed genes of 20 selected genes of the pathway PI3K. The selected genes are the top 20 having the lowest number of commonly co-expressed genes. (PDF 716 kb)
Operational Markovianization in Randomized Benchmarking
Creators: name: Figueroa-Romero, Pedro
name: Papič, Miha
name: Auer, Adrian
name: Hsieh, Min-Hsiu
name: Modi, Kavan
name: de Vega, Inés
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: A crucial task to obtain optimal and reliable quantum devices is to quantify their overall performance. The average fidelity of quantum gates is a particular figure of merit that can be estimated efficiently by Randomized Benchmarking (RB). However, the concept of gate-fidelity itself relies on the crucial assumption that noise behaves in a predictable, time-local, or so-called Markovian manner, whose breakdown can naturally become the leading source of errors as quantum devices scale in size and depth. We analytically show that error suppression techniques such as Dynamical Decoupling (DD) and Randomized Compiling (RC) can operationally Markovianize RB: i) fast DD reduces non-Markovian RB to an exponential decay plus longer-time corrections, while on the other hand, ii) RC generally does not affect the average, but iii) it always suppresses the variance of such RB outputs. We demonstrate these effects numerically with a qubit noise model. Our results show that simple and efficient error suppression methods can simultaneously tame non-Markovian noise and allow for standard and reliable gate quality estimation, a fundamentally important task in the path toward fully functional quantum devices.
description: 12+19 pages, 10 figures
Additional file 1: of A comparative study of enzyme initiators for crosslinking phenol-functionalized hydrogels for cell encapsulation
Creators: name: Roberts, Justine
name: Naudiyal, Pratibha
name: Khoon Lim
name: Poole-Warren, Laura
name: Martens, Penny
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology

description: Additional figures show hydrogel crosslinking efficiency with all four initiators, intracellular ROS during H2O2 incubation, and fibroblast proliferation after H2O2 exposure. (DOCX 351Â kb)
Additional file 1 of Microbiota of the indoor environment: a meta-analysis
Creators: name: Adams, Rachel
name: Bateman, Ashley
name: Bik, Holly
name: Meadow, James
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Developmental Biology
subject: Computational Biology

description: Figure S1. Bray-Curtis ordination. Principal coordinate analysis (PCoA) of bacteria in the 16 â  sinkâ   studies using the Bray-Curtis taxonomic metric. Compare this to Fig. 3 a in the main text. The top ten indicator taxa are shown as triangles. (PDF 105 kb)
Additional file 2 of Microbiota of the indoor environment: a meta-analysis
Creators: name: Adams, Rachel
name: Bateman, Ashley
name: Bik, Holly
name: Meadow, James
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: Figure S2. Pairwise distance observations. Comparison of the distributions of ecological distances among taxonomic and phylogenetic metrics. Y-axes on the histograms (along the diagonal) indicate distribution density, and all other axes are unitless and are bound by 0 and 1. The distribution of UniFrac distances (bottom panel) is nearly normal compared to the taxonomic distributions that are skewed toward 1. This suggests that this choice of unweighted UniFrac is best suited for ordination and Î˛-diversity analysis. The scatter plots (off the diagonal) show the correlation of values between the pairs of metrics, indicating that the different metrics are highly correlated with one another, and generally yield similar information. (PDF 3174 kb)
Additional file 1: Table S1. of Ketogenic diet modifies the gut microbiota in a murine model of autism spectrum disorder
Creators: name: Newell, Christopher
name: Bomhof, Marc
name: Raylene Reimer
name: Hittel, Dustin
name: Rho, Jong
name: Shearer, Jane
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: Gut microbial group-specific primers and genomic DNA standards for qRT-PCR. (DOC 48 kb)
Associations between age and cortisol awakening response in patients with borderline personality disorder
Creators: name: Rausch, Juliane
name: Flach, Elisa
name: Panizza, Angelika
name: Brunner, Romuald
name: Herpertz, Sabine C.
name: Kaess, Michael
name: Bertsch, Katja
Publisher: name: Universität Regensburg
Year: 2021
Subjects: subject: SALIVARY CORTISOL; HPA AXIS; STRESS; ABUSE; GENDER; HEALTH; Borderline personality disorder; Aging; Stress; Hypothalamic-pituitary-adrenal axis; Cortisol awakening response
subject: 610 Medizin

description: Patients with borderline personality disorder (BPD) often display increased stress vulnerability, which may be linked to altered hypothalamus-pituitary-adrenal (HPA) axis functioning. Corresponding deviations of the cortisol awakening response (CAR) are presumed to mirror maladaptive neuroendocrine processes, which may explain why CARs are increased compared to healthy controls (HC). Prior research speculated that these alterations may be caused by early life stress and/or chronic stress related to the ongoing burden of the disorder. Yet, it remains to be investigated how BPD influences CAR in the course of development. Therefore, the current study examined CAR in female adolescents and adults with BPD compared to HC with a particular focus on associations with age. These potential associations were especially focused, as it was hypothesized that the CAR would be even more elevated (i.e., higher) in older individuals with BPD. CAR was assessed in 54 female individuals with BPD (aged 15-40 years) and 54 sex-, age-, and intelligence-matched HC (aged 15-48 years). Group differences were investigated and analyses of covariance using age as continuous predictor were performed to analyze potential developmental associations with CAR alongside BPD-specific effects. Pearson's correlations were calculated to examine associations between CAR and age. Analyses were repeated with potential confounders as control factors. Results not only demonstrated increased CARs in female individuals with BPD compared to HC but demonstrated elevated CARs with increasing age in BPD individuals exclusively. Effects remained stable after controlling for potential confounders. Thereby, findings suggest that endocrine alterations in BPD may reinforce with increasing age and BPD chronicity.
Semiautomated quantification of the fibrous tissue response to complex three‐dimensional filamentous scaffolds using digital image analysis
Creators: name: Barsch, Friedrich
name: Mamilos, Andreas
name: Babel, Maximilian
name: Wagner, Willi L.
name: Winther, Hinrich B.
name: Schmitt, Volker H.
name: Hierlemann, Helmut
name: Teufel, Andreas
name: Brochhausen, Christoph
Publisher: name: Universität Regensburg
Year: 2021
Subjects: subject: biocompatibility, biomaterial, fibrosis, semiautomatic scoring
subject: 610 Medizin

description: Fibrosis represents a relevant response to the implantation of biomaterials, which occurs not only at the tissue–material interface (fibrotic encapsulation) but also within the void fraction of complex three-dimensional (3D) biomaterial constructions (fibrotic ingrowth). Usual evaluation of the biocompatibility mostly depicts fibrosis at the interface of the biomaterial using semiquantitative scores. Here, the relations between encapsulation and infiltrating fibrotic growth are poorly represented. Virtual pathology and digital image analysis provide new strategies to assess fibrosis in a more differentiated way. In this study, we adopted a method previously used to quantify fibrosis in visceral organs to the quantification of fibrosis to 3D biomaterials. In a proof-of-concept study, we transferred the “Collagen Proportionate Area” (CPA) analysis from hepatology to the field of biomaterials. As one task of an experimental animal study, we used CPA analysis to quantify the fibrotic ingrowth into a filamentous scaffold after subcutaneous implantation. We were able to demonstrate that the application of the CPA analysis is well suited as an additional fibrosis evaluation strategy for new biomaterial constructions. The CPA method can contribute to a better understanding of the fibrotic interactions between 3D scaffolds and the host tissue responses.
The role of 25-hydroxyvitamin-D3 and vitamin D receptor gene in human periodontal ligament fibroblasts as response to orthodontic compressive strain: an in vitro study
Creators: name: Küchler, Erika Calvano
name: Schröder, Agnes
name: Teodoro, Vinicius Broska
name: Nazet, Ute
name: Scariot, Rafaela
name: Spanier, Gerrit
name: Proff, Peter
name: Kirschneck, Christian
Publisher: name: Universität Regensburg
Year: 2021
Subjects: subject: HUMAN GINGIVAL FIBROBLASTS; TOOTH MOVEMENT; OSTEOCLAST DIFFERENTIATION; EXPRESSION; OSTEOPROTEGERIN; POLYMORPHISMS; BIOLOGY; RANKL; Vitamin D; Tooth movement; Polymorphism; Gene
subject: 610 Medizin

description: Background This study aimed to investigate, if different physiological concentrations of vitamin D (25(OH)D-3) and single nucleotide polymorphisms in vitamin D receptor (VDR) gene have an impact on gene expression in human periodontal ligament (hPDL) fibroblasts induced by simulated orthodontic compressive strain. Methods A pool of hPDL fibroblasts was treated in absence or presence of 25(OH)D-3 in 3 different concentrations (10, 40 and 60 ng/ml). In order to evaluate the role of single nucleotide polymorphisms in the VDR gene, hPDL fibroblasts from 9 patients were used and treated in absence or presence of 40 ng/ml 25(OH)D-3. Each experiment was performed with and without simulated orthodontic compressive strain. Real-time PCR was used for gene expression and allelic discrimination analysis. Relative expression of dehydrocholesterol reductase (DHCR7), Sec23 homolog A, amidohydrolase domain containing 1 (AMDHD1), vitamin D 25-hydroxylase (CYP2R1), Hydroxyvitamin D-1-alpha hydroxylase, receptor activator of nuclear factor-kappa B ligand (RANKL), osteoprotegerin (OPG), cyclooxygenase-2 (COX-2) and interleukin-6 (IL6) was assessed. Three single nucleotide polymorphisms in VDR were genotyped. Parametric or non-parametric tests were used with an alpha of 5%. Results RANKL, RANKL:OPG ratio, COX-2, IL-6, DHCR7, CYP2R1 and AMDHD1 were differentially expressed during simulated orthodontic compressive strain (p < 0.05). The RANKL:OPG ratio was downregulated by all concentrations (10 ng/ml, 40 ng/ml and 60 ng/ml) of 25(OH)D-3 (mean = 0.96 +/- 0.68, mean = 1.61 +/- 0.66 and mean = 1.86 +/- 0.78, respectively) in comparison to the control (mean 2.58 +/- 1.16) (p < 0.05). CYP2R1 gene expression was statistically modulated by the different 25(OH)D-3 concentrations applied (p = 0.008). Samples from individuals carrying the GG genotype in rs739837 presented lower VDR mRNA expression and samples from individuals carrying the CC genotype in rs7975232 presented higher VDR mRNA expression (p < 0.05). Conclusions Simulated orthodontic compressive strain and physiological concentrations of 25(OH)D-3 seem to regulate the expression of orthodontic tooth movement and vitamin-D-related genes in periodontal ligament fibroblasts in the context of orthodontic compressive strain. Our study also suggests that single nucleotide polymorphisms in the VDR gene regulate VDR expression in periodontal ligament fibroblasts in the context of orthodontic compressive strain.
USE OF PUMPING STATIONS AND THE INFLUENCE OF DEFORMATIONS ON THEIR WATER DELIVERY CHANNELS.
Creators: name: Fayzullayev, Joxon
Publisher: name: Zenodo
Year: 2024

description: On the territory of the Republic of Uzbekistan, internal water resources are formed in the system of water management, there are several problems that cause discomfort in the state of Use, and to eliminate these, many scientific works are being carried out on these, articles are being prepared in order to solve this problem, and with them changes are being made and problems are being solved
Quantum Internet Addressing
Creators: name: Cacciapuoti, Angela Sara
name: Illiano, Jessica
name: Caleffi, Marcello
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The design of the Quantum Internet protocol stack is at its infancy and early-stage conceptualization. And different heterogeneous proposals are currently available in the literature. The underlying assumption of the existing proposals is that they implicitly mimic classical Internet Protocol design principles: "A name indicates what we seek. An address indicates where it is. A route indicates how to get there''. Hence the network nodes are labeled with classical addresses, constituted by classical bits, and these labels aim at reflecting the node location within the network topology. In this paper, we argue that this twofold assumption of classical and location-aware addressing constitutes a restricting design option, which prevents to scale the quantumness to the network functionalities, beyond simple information encoding/decoding. On the contrary, by embracing quantumness within the node addresses, quantum principles and phenomena could be exploited for enabling a quantum native functioning of the entire communication network. This will unleash the ultimate vision and capabilities of the Quantum Internet.
Metrical Properties of Continued and Lüroth Expansions
Creators: name: Brown-Sarre, Adam
Publisher: name: La Trobe
Year: 2024
Subjects: classificationCode: 49
subject: Mathematical sciences
classificationCode: 490401
subject: Algebra and number theory

description: A thesis submitted in total fulfilment for the degree of Master of Science to the School of Computing, Engineering and Mathematical Sciences, La Trobe University, Victoria, Australia.
Additional file 3 of Microbiota of the indoor environment: a meta-analysis
Creators: name: Adams, Rachel
name: Bateman, Ashley
name: Bik, Holly
name: Meadow, James
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Figure S3. Cyanobacteria. Example of taxonomic bias observed in technical control samples compared to environmental samples for taxa likely to be present in environmental samples. The composition of each of the pooled (a) dust and (b) kit controls is shown as a donut. The dust composition displayed higher abundances of Cyanobacteria (blue slice in donut chart indicated by arrows.) Per-sample abundance of Cyanobacteria is represented by blue bars displayed across all panels. Donut and bar charts were generated using the Phinch data visualization framework [63]. (PDF 146 kb)
Any-dimensional equivariant neural networks
Creators: name: Levin, Eitan
name: Díaz, Mateo
Publisher: name: arXiv
Year: 2023
Subjects: subject: Machine Learning (cs.LG)
subject: Representation Theory (math.RT)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences
subject: FOS: Mathematics

description: Traditional supervised learning aims to learn an unknown mapping by fitting a function to a set of input-output pairs with a fixed dimension. The fitted function is then defined on inputs of the same dimension. However, in many settings, the unknown mapping takes inputs in any dimension; examples include graph parameters defined on graphs of any size and physics quantities defined on an arbitrary number of particles. We leverage a newly-discovered phenomenon in algebraic topology, called representation stability, to define equivariant neural networks that can be trained with data in a fixed dimension and then extended to accept inputs in any dimension. Our approach is user-friendly, requiring only the network architecture and the groups for equivariance, and can be combined with any training procedure. We provide a simple open-source implementation of our methods and offer preliminary numerical experiments.
description: 21 pages, 2 figures
Additional file 1: of On the transmission pattern of Kyasanur Forest disease (KFD) in India
Creators: name: Murhekar, Manoj
name: Gudadappa Kasabi
name: Mehendale, Sanjay
name: Mourya, Devendra
name: Yadav, Pragya
name: Babasaheb Tandale
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Multilingual abstracts in the six official working languages of the United Nations. (PDF 282Â kb)
Additional file 1: of Validity and reliability of quality of recovery-35 Thai version: a prospective questionnaire-based study
Creators: name: Siriporn Pitimana-Aree
name: Suthipol Udompanthurak
name: Saowaphak Lapmahapaisan
name: Matula Tareerath
name: Aungsumat Wangdee
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Thai QoR 35 questionnaire. (DOCX 40 kb)
Underwater Acoustic Target Recognition based on Smoothness-inducing Regularization and Spectrogram-based Data Augmentation
Creators: name: Xu, Ji
name: Xie, Yuan
name: Wang, Wenchao
Publisher: name: arXiv
Year: 2023
Subjects: subject: Sound (cs.SD)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: Underwater acoustic target recognition is a challenging task owing to the intricate underwater environments and limited data availability. Insufficient data can hinder the ability of recognition systems to support complex modeling, thus impeding their advancement. To improve the generalization capacity of recognition models, techniques such as data augmentation have been employed to simulate underwater signals and diversify data distribution. However, the complexity of underwater environments can cause the simulated signals to deviate from real scenarios, resulting in biased models that are misguided by non-true data. In this study, we propose two strategies to enhance the generalization ability of models in the case of limited data while avoiding the risk of performance degradation. First, as an alternative to traditional data augmentation, we utilize smoothness-inducing regularization, which only incorporates simulated signals in the regularization term. Additionally, we propose a specialized spectrogram-based data augmentation strategy, namely local masking and replicating (LMR), to capture inter-class relationships. Our experiments and visualization analysis demonstrate the superiority of our proposed strategies.