cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Topological time series analysis of a string experiment and its synchronized model
Creators: name: Tufillaro, Nicholas B.
Publisher: name: arXiv
Year: 1994
Subjects: subject: Chaotic Dynamics (nlin.CD)
subject: FOS: Physical sciences

description: Template and prunning front are calculated for an experimental chaotic time series from a mechanical string experiment. An empirical synchronized model is also created for the data set. To appear in Physical Review E.
description: Self extracting Shell archive (compressed, uuencoded). Contains Postscript and/or RevTex. (nbt@reed.edu)
Coccinella 2-punctata Linnaeus, 1758, spec. nov.
Creators: name: Linnaeus, Carolus
Publisher: name: Laurentius Salvius
Year: 1758
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Coccinellidae
Coccinella
Coccinella 2-Punctata

description: Coccinella 2-punctata [spec. nov.]
C. coleoptris rubris: punctis nigris duobus. Fn. svec. 388.
Pet. gaz. 34. t. 21. f. 4.
Habitat in Europae Alnetis.
Puncta duo in medio coleoptrorum.
description: Published as part of Linnaeus, Carolus, 1758, Systema Naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Stockholm :Laurentius Salvius on pages 364-365, DOI: 10.5962/bhl.title.542, http://zenodo.org/record/3922206
title: Scalable Data Management using GPUs with Fast Interconnects
Creators: name: Lutz, Clemens
Publisher: name: Gesellschaft für Informatik, Bonn
Year: 2025

description: Modern database management systems (DBMSs) are tasked with analyzing terabytes of data, employing a rich set of relational and machine learning operators. To process data at large scales, research efforts have strived to leverage the high computational throughput and memory bandwidth of specialized co-processors such as graphics processing units (GPUs). However, scaling data management on GPUs is challenging because (1) the on-board memory of GPUs has too little capacity for storing large data volumes, while (2) the interconnect bandwidth is not sufficient for ad hoc transfers from main memory. Thus, data management on GPUs is limited by a data transfer bottleneck. In practice, CPUs process large-scale data faster than GPUs, reducing the utility of GPUs for DBMSs. In this thesis, we investigate how a new class of fast interconnects can address the data transfer bottleneck and scale GPU-enabled data management. Fast interconnects link GPU co-processors to a CPU with high bandwidth and cache-coherence. We apply our insights to process stateful and iterative algorithms out-of-core by the examples of a hash join and k-means clustering. We first analyze the hardware properties. Our experiments show that the high interconnect bandwidth enables the GPU to efficiently process large data sets stored in main memory. Furthermore, cache-coherence facilitates new DBMS designs that tightly integrate CPU and GPU via shared data structures and pageable memory allocations. However, irregular accesses from the GPU to main memory are not efficient. Thus, the operator state of, e.g., joins does not scale beyond the GPU memory capacity. We scale joins to a large state by contributing our new Triton join algorithm. Our main insight is that fast interconnects enable GPUs to efficiently spill the join state by partitioning data out-of-core. Thus, our Triton join breaks through the GPU memory capacity limit and increases throughput by up to 2.5× compared to a radix-partitioned join on the CPU. We scale k-means to large data sets by eliminating two key sources of overhead. In existing strategies, execution crosses from the GPU to the CPU on each iteration, which results in the cross-processing and multi-pass problems. In contrast, our solution requires only a single data pass per iteration and speeds-up throughput by up to 20×. Overall, GPU-enabled DBMSs are able to overcome the data transfer bottleneck by employing new out-of-core algorithms that take advantage of fast interconnects.
Additional file 4 of Dipeptide repeat proteins inhibit homology-directed DNA double strand break repair in C9ORF72 ALS/FTD
Creators: name: Andrade, Nadja
name: Ramic, Melina
name: Esanov, Rustam
name: Liu, Wenjun
name: Rybin, Mathew
name: Gaidosh, Gabriel
name: Abdallah, Abbas
name: Del’Olio, Samuel
name: Huff, Tyler
name: Chee, Nancy
name: Anatha, Sadhana
name: Gendron, Tania
name: Wahlestedt, Claes
name: Zhang, Yanbin
name: Benatar, Michael
name: Mueller, Christian
name: Zeier, Zane
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 4. Validation of NPM1 knockdown and PR overexpression. In parallel with the quantification of SSA and NHEJ (Fig. 3), a subset of cells were transfected with either a control (CTL) siRNA, a NPM1 specific siRNA, an empty control vector (vector) or a PR expression vector (PR). (A) To confirm NPM1 depletion, RNA was extracted from three biological replicates and analyzed by real-time RT-PCR using the relative quantification method where GAPDH served as the endogenous control. Cells transfected with the NPM1 siRNA has significantly lower levels of NPM1 mRNA (****p < 0.0001). (B) Also in parallel, proteins were isolated from two biological replicates and analyzed by western blot. Relative to the endogenous control (Actin), NPM1 levels were drastically reduced. (C) To confirm the overexpression of PR in cells transfected with the PR overexpression vector (PR) or an empty control vector (vector), the insoluble nuclear protein fraction was isolated and a slot-blot was performed, hybridized with the anti-PR antibody then visualized by chemiluminescence. A robust increase in PR expression was readily observed.
Pseudoscalar decays to gauge bosons at the LHC and at a future 100 TeV collider
Creators: name: Arhrib, Abdesslam
name: Benbrik, Rachid
name: Falaki, Jaouad El
name: Sampaio, Marco
name: Santos, Rui
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We discuss the search for a CP-odd scalar decaying into gauge bosons in the framework of a CP-conserving two-Higgs doublet model (2HDM) and of a 2HDM extended with a vector-like quark (VLQ) at the Large Hadron Collider and at a future 100 TeV collider. The rate of decay of a pseudoscalar to $Z$-bosons could be important to ascertain the CP-nature of the scalars in the model. In the 2HDM $A \to ZZ$ will be extremely hard to detect even at a future 100 TeV $pp$ collider while in the 2HDM+VLQ this decay can be probed even during the present LHC run. We further discuss all decays of the pseudoscalar into gauge bosons at the LHC and at a future 100 TeV collider in the alignment limit where the lightest scalar is the 125 GeV Higgs with SM-like couplings to the fermions and gauge bosons.
MOESM2 of Microdialysis and ultrasound elastography for monitoring of localized muscular reaction after pharmacological stimulation in rats
Creators: name: Johannsen, Stephan
name: Schick, Martin
name: Roewer, Norbert
name: Schuster, Frank
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 2: Table S2a. Intramuscular lactate concentrations, groups A, B and C. b. Intramuscular lactate concentrations, groups D and E. c. Intramuscular lactate concentrations, groups F and G.
title: Fast, Parameter-free Time Series Anomaly Detection
Creators: name: Blagov, Kristiyan
name: Muñiz-Cuza, Carlos Enrique
name: Boehm, Matthias
Publisher: name: Gesellschaft für Informatik, Bonn
Year: 2025

description: Time series anomaly detection is a common problem across many domains. Despite the introduction of numerous algorithms leveraging deep learning, classical machine learning, and data mining techniques, no dominating approach has emerged. A common challenge is extensive parameter tuning and the high computational costs associated with many of these existing methods. To address this problem, this paper proposes a parameter-free anomaly detection algorithm, STAN (summary statistics ensemble). STAN applies a set of summary statistics over sliding windows and compares the results to the normal behavior learned during training. STAN flexibility allows for integrating different statistical aggregates, which effectively handle diverse types of anomalies. Our evaluation shows that STAN achieves a detection accuracy 60.4%, close to the widely used MERLIN algorithm (63.6%) while reducing execution time by more than an order of magnitude compared to all baselines.
Counting Cold Collisions
Creators: name: Ueberholz, B.
name: Kuhr, S.
name: Frese, D.
name: Meschede, D.
name: Gomer, V.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We have experimentally explored a novel possibility to study exoergic cold atomic collisions. Trapping of small countable atom numbers in a shallow magneto-optical trap and monitoring of their temporal dynamics allows us to directly observe isolated two-body atomic collisions and provides detailed information on loss statistics. A substantial fraction of such cold collisional events has been found to result in the loss of one atom only. We have also observed for the first time a strong optical suppression of ground-state hyperfine-changing collisions in the trap by its repump laser field.
description: LaTeX 2e, 5 pages, 4 Postscript figures
Q-zero range has random walking shocks
Creators: name: Balázs, Márton
name: Duffy, Lewis
name: Pantelli, Dimitri
Publisher: name: arXiv
Year: 2018
Subjects: subject: Probability (math.PR)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Mathematics
subject: FOS: Physical sciences
subject: 60K35, 82C23

description: ... but no other surprises in the zero range world. We check all nearest neighbour 1-dimensional asymmetric zero range processes for random walking product shock measures as demonstrated already for a few cases in the literature. We find the totally asymmetric version of the celebrated q-zero range process as the only new example besides an already known model of doubly infinite occupation numbers and exponentially increasing jump rates. We also examine the interaction of shocks, which appears somewhat more involved for q-zero range than in the already known cases.
description: 11 pages. Made intro parts self-contained and corrected a few typos
title: A Showcase of LLMs in Action: SQL Generation from Natural Language (Demo Paper)
Creators: name: Schildgen, Johannes
name: Heinz, Florian
Publisher: name: Gesellschaft für Informatik, Bonn
Year: 2025

description: Today, large language models are a very efficient tool for human-computer interaction using natural language. Chatbots like ChatGPT and their corresponding APIs can be used to solve a large variety of tasks that are provided in human-comprehensible sentences, for example generating SQL queries. Executing spoken SQL queries in a database system poses a challenge, because the various syntactical details of SQL are usually not provided verbally. Here, the LLM can help to augment the recognized raw query with the syntax elements needed for successful execution. Furthermore, the correct spelling of table and column names can be derived from the database schema provided in the LLM prompt. This work showcases four use cases in which LLMs assist in querying database systems: (1) A plugin for phpMyAdmin for voice-query input in natural language, (2) a chart generator, (3) an Alexa skill, and (4) a speech-controlled action game SQL Invaders.
On the definition and examples of cones and Finsler spacetimes
Creators: name: Javaloyes, Miguel Angel
name: Sánchez, Miguel
Publisher: name: arXiv
Year: 2018
Subjects: subject: Differential Geometry (math.DG)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Mathematics
subject: FOS: Physical sciences

description: A systematic study of (smooth, strong) cone structures $\C$ and Lorentz-Finsler metrics $L$ is carried out. As a link between both notions, cone triples $(Ω,T, F)$, where $Ω$ (resp. $T$) is a 1-form (resp. vector field) with $Ω(T)\equiv 1$ and $F$, a Finsler metric on $\ker (Ω)$, are introduced. Explicit descriptions of all the Finsler spacetimes are given, paying special attention to stationary and static ones, as well as to issues related to differentiability. In particular, cone structures $\C$ are bijectively associated with classes of anisotropically conformal metrics $L$, and the notion of {\em cone geodesic} is introduced consistently with both structures. As a non-relativistic application, the {\em time-dependent} Zermelo navigation problem is posed rigorously, and its general solution is provided.
description: 49 pages, v4: Remark 2.18 expanded, one uncited reference removed and minor modifications. To appear in RACSAM
Coccinella 3-punctata Linnaeus, 1758, spec. nov.
Creators: name: Linnaeus, Carolus
Publisher: name: Laurentius Salvius
Year: 1758
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Coccinellidae
Coccinella
Coccinella 3-Punctata

description: Coccinella 3-punctata [spec. nov.]
C. coleoptris rubris: punctis nigris tribus.
Habitat in Europa.
Puncta duo ad apicem coleoptrorum.
description: Published as part of Linnaeus, Carolus, 1758, Systema Naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Stockholm :Laurentius Salvius on page 365, DOI: 10.5962/bhl.title.542, http://zenodo.org/record/3922206
Additional file 1 of Manipulating the position of DNA expression cassettes using location tags fused to dCas9 (Cas9-Lag) to improve metabolic pathway efficiency
Creators: name: Xie, Qianwen
name: Li, Siwei
name: Zhao, Dongdong
name: Ye, Lijun
name: Li, Qingyan
name: Zhang, Xueli
name: Zhu, Li
name: Bi, Changhao
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Space Science
subject: Physical Sciences not elsewhere classified
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Additional file 1: Table S1. The primers used in this research. Table S2. The protein mass spectrometry result of E. coli membrane. Figure S1. The growth curve of strains CAR025-CrtZ and CAR025-CrtZ-CK with in 48h of fermentation. CAR025-CrtZ (CAR025 co-transformed with plasmids pSC101-CrtZ, pGlpF-dCas9, pgRNA-pSC101bb),CAR025-CrtZ-CK(CAR025 co-transformed with plasmids pSC101-CrtZ, pGlpF-dCas9, pgRNA-N20). Figure S2. The plasmid stability assays of CAR025-CrtZ and CAR025-CrtZ-CK. The culture was transferred every 12 h and 8 transfers were conducted. CAR025-CrtZ (CAR025 co-transformed with plasmids pSC101-CrtZ, pGlpF-dCas9, pgRNA-pSC101bb), CAR025-CrtZ-CK( CAR025 co-transformed with plasmids pSC101-CrtZ,pGlpF-dCas9, pgRNA-N20). Figure S3. The fluorescence microscopy of cells with Cas9-Lag targeted plasmids expressing RFP fusion. a) The fluorescence microscopy images of CAR025-CrtZ-RFP and it’s control strain CAR025-CrtZ-RFP-CK; b) The fluorescence microscopy images of CAR025-CrtW-RFP and it’s contol strain CAR025-CrtW-RFP-CK.
title: Relationship Discovery for Heterogeneous Time Series Integration: A Comparative Analysis for Industrial and Building Data
Creators: name: Weber, Lucas
name: Lenz, Richard
Publisher: name: Gesellschaft für Informatik, Bonn
Year: 2025

description: Cyber-physical systems like buildings and power plants are monitored with ever-increasing numbers of sensors, gathering massive and heterogeneous time-series datasets collected in data lakes. Appropriate meta-data, describing both the function and location of each sensor, is essential for any profitable use of the data but is often not available or incomplete. Particularly, information about related sensors, meaning sensors belonging to the same functional subsystem, might be hard to derive if appropriate meta-data is unavailable. While various approaches exist for automatic meta-data extraction from relational databases, the unique characteristics of heterogeneous time-series data necessitate specialized algorithms. Among the general algorithms developed for time-series meta-data inference, only a few are concerned with relationship discovery despite the critical importance of this information in many meta-data formats. Nevertheless, other domains offer a variety of measures for pairwise relationship discovery in homogeneous time-series collections. This paper consolidates these measures and evaluates their performance for identifying related but heterogeneous time series from the same functional subsystem within industrial facilities. We evaluate the methods on a collection of different datasets to extract promising relationship measures from the literature and show that there are other better-performing candidates than the common Pearson Correlation Coefficient.
title: ADCO, Cartulaire de Cîteaux pour les possessions de Chaugey et Maison-Dieu (Fin XVe siècle), Cart. 180 (11 H 755), 83 folios, f. 0010
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2017
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire

description: Cartulaire de Cîteaux pour les possessions de Chaugey et Maison-Dieu (Fin XVe siècle), Archives départementales de la Côte-d'Or, Cart. 180 (11 H 755), 83 folios, f. 0010, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de Cîteaux pour les possessions de Chaugey et Maison-Dieu (Fin XVe siècle), Archives départementales de la Côte-d'Or, Cart. 180 (11 H 755), 83 folios, f. 0010, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Extension of ``Renormalization of period doubling in symmetric volume-preserving maps''
Creators: name: Kim, Sang-Yoon
Publisher: name: arXiv
Year: 1994
Subjects: subject: Chaotic Dynamics (nlin.CD)
subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: We numerically reexamine the scaling behavior of period doublings in four-dimensional volume-preserving maps in order to resolve a discrepancy between numerical results on scaling of the coupling parameter and the approximate renormalization results reported by Mao and Greene [Phys. Rev. A {\bf 35}, 3911 (1987)]. In order to see the fine structure of period doublings, we extend the simple one-term scaling law to a two-term scaling law. Thus we find a new scaling factor associated with coupling and confirm the approximate renormalization results.
description: 13 pages + 1 figure (available upon request), RevTex 3.0
title: Plaquette: Visualizing Redundancies in Relational Data
Creators: name: Köhnen, Christoph
name: Zumbrägel, Jens
name: Scherzinger, Stefanie
Publisher: name: Gesellschaft für Informatik, Bonn
Year: 2025

description: Functional dependencies are a fundamental topic in database education, yet students often find the concept abstract. To foster understanding of functional dependencies that capture redundancies in relational data, we propose an educational software tool called Plaquette. This tool offers a novel visualization of redundancies by coloring cells that contain redundant data, where deeper hues indicate stronger redundancies. In analogy to plaque tests at the dentist's office, we refer to these redundancies as "plaque". In our demo, we begin by recapping the definition of functional dependencies, followed by introducing our concept of plaque. Demo participants are then invited to interact with Plaquette, and assess sample scenarios that showcase small examples of relations and functional dependencies. By swiping through scenarios with correct but also fake plaque on a tablet in Tinder-style interaction, participants can playfully improve their intuition for the concept of functional dependencies. Beyond contributing a new teaching tool, our ultimate goal is to assist data analysts explore redundancies in real-world data, using tools like Plaquette.
title: Identifying Semantic Components for PBE-based Transformation Discovery
Creators: name: Men, Dakai
name: Chen, Binger
name: Abedjan, Ziawasch
Publisher: name: Gesellschaft für Informatik, Bonn
Year: 2025

description: Complex data transformations involve a combination of syntactic and semantic operations. Recent LLM-based Programming-by-example (PBE) approaches aid in finding sequences of syntactic and semantic operations to satisfy given transformation examples. As testing LLM outputs is expensive, such approaches defer the prompting step after all syntactic operations have been identified. During this process, sequences of tokens that need semantic look-ups are split and their order is lost, leading to lower accuracy. We address this problem by focusing on transformation tasks that are challenging and propose a pre-processing step that impedes destructive splits of such sequences.
MOESM1 of Microdialysis and ultrasound elastography for monitoring of localized muscular reaction after pharmacological stimulation in rats
Creators: name: Johannsen, Stephan
name: Schick, Martin
name: Roewer, Norbert
name: Schuster, Frank
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Medicine
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 1: Table S1. Muscle elasticity at rest and during tetanic contraction.
Existence criteria for stabilization from the scaling behaviour of ionization probabilities
Creators: name: Faria, C. Figueira de Morisson
name: Fring, A.
name: Schrader, R.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Atomic Physics (physics.atom-ph)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We provide a systematic derivation of the scaling behaviour of various quantities and establish in particular the scale invariance of the ionization probability. We discuss the gauge invariance of the scaling properties and the manner in which they can be exploited as consistency check in explicit analytical expressions, in perturbation theory, in the Kramers-Henneberger and Floquet approximation, in upper and lower bound estimates and fully numerical solutions of the time dependent Schroedinger equation. The scaling invariance leads to a differential equation which has to be satisfied by the ionization probability and which yields an alternative criterium for the existence of atomic bound state stabilization.
description: 12 pages of Latex, one figure
Coccinella hebraea Linnaeus, 1758, spec. nov.
Creators: name: Linnaeus, Carolus
Publisher: name: Laurentius Salvius
Year: 1758
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Coccinellidae
Coccinella
Coccinella hebraea

description: Coccinella hebraea [spec. nov.]
C. coleoptris luteis: maculis nigris sex longitudinalibus difformibus.
Habitat in Europa.
description: Published as part of Linnaeus, Carolus, 1758, Systema Naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Stockholm :Laurentius Salvius on page 365, DOI: 10.5962/bhl.title.542, http://zenodo.org/record/3922206
Additional file 2 of PGE2 promotes macrophage recruitment and neovascularization in murine wet-type AMD models
Creators: name: Zhan, Pengfei
name: Cui, Yuqing
name: Cao, Yujuan
name: Bao, Xun
name: Wu, Meili
name: Yang, Qian
name: Yang, Jiahui
name: Zheng, Haohan
name: Zou, Jian
name: Xie, Tianhua
name: Cai, Jiping
name: Yao, Yong
name: Wang, Xiaolu
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Physiology
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 1: Fig. S1: The cytotoxicity of intravitreal injection of celecoxib. Table S1. Key resources table
Characterisation of SiPMs
Creators: name: Klanner, Robert
Publisher: name: arXiv
Year: 2018
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: Silicon photomultipliers, thanks to their excellent performance, robustness and relatively simple use, are the photon-detectors of choice for many present and future applications. This paper gives an overview of methods to characterise SiPMs. The different SiPM parameters are introduced and generic setups for their determination presented. Finally, ways to extract the parameters from the measurements are discussed and the results shown. If a parameter can be obtained from different measurements, the results are compared and recommendations given, which is considered to be the most reliable. The characterisation of SiPMs, in particular for high light intensities and in high radiation fields, is presently a field of intensive research with many open questions and problems which will be discussed.
description: 33 pages, 27 figures, Review paper
A New Class of Adiabatic Cyclic States and Geometric Phases for Non-Hermitian Hamiltonians
Creators: name: Mostafazadeh, Ali
Publisher: name: arXiv
Year: 1999
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: For a T-periodic non-Hermitian Hamiltonian H(t), we construct a class of adiabatic cyclic states of period T which are not eigenstates of the initial Hamiltonian H(0). We show that the corresponding adiabatic geometric phase angles are real and discuss their relationship with the conventional complex adiabatic geometric phase angles. We present a detailed calculation of the new adiabatic cyclic states and their geometric phases for a non-Hermitian analog of the spin 1/2 particle in a precessing magnetic field.
description: Plain Latex, accepted for publication in Phys. Lett. A
UBC RDM Workshop 3 - Data Publishing and Data Archiving
Creators: name: Böhmer, Jasmin
Publisher: name: Zenodo
Year: 2019
Subjects: research data management
data publishing
data archiving
standards
FAIR data
data repositories
re3data
data license
long term archiving
persistent identifier

description: UBC Workshop 3: How to advance science by publishing your data in the right manner, at the right place and time. (Data Publishing and Data Archiving) Digital information lasts forever — or five years, whichever comes first! ~Jeff Rothenberg (1999) Presentation: This session will swiftly show-case the different shapes and formats data is published on the web recently, and what characteristics and benefits each approach has. Thereafter it's time to improve your research exposure with getting an ORCID-ID and DOIs for your data to enable tools such as almetric to log your attention and impact scores. Secondly, you will learn the basics to take care before and when publishing data online to enable the best citation tracking and discoverability for your peers, your colleagues and the wider public. Hands-On: The list of available data repositories is long, and sometimes it hard to figure out why you should choose a specific one and not another. Since 2012 re3data.org is shaping one of the biggest - perhaps THE biggest- global registry of research data repositories. Where if not here to look for what options you would have to preserve and share your specific research data? The second and longer interactive session will focus on the Open Science focussed data repository Zenodo by CERN. If you cannot find a suitable data archive or repository to preserve and publish your data, it will probably find a good long-term home on Zenodo! With the provided testing environment called Zenodo Sandbox we will explore how to upload data to Zenodo and what kind of metadata is necessary to create a meaningfull data-set that still has re-use value in decades. This session is wrapped up with a discussion and Q&A section. In Detail: Session:
 Data Archiving and Data Publishing Presentation:
 - From URL to DOI: Types of Data Publications
 - Essentials of Data Publications
 - Choose wisely: types of data archives Interactive Exercises:
 - re3data.org exploration
 - Zenodo Sandbox hands-on Session Plan, Thursday 07th November 2019: 15:00-16:00 Intro
 Ice-Breaker + Grouping
 Presentation
 Break
 re3data.org Exercise
 Exercise Discussion 16:00-17:00 Hands-on time for
 Zenodo Sandbox 17:00 Snack and Drinks
description: The PDF version depicts the original slide-set, PPTX and ODP for reusing slides.
MOESM1 of Factors associated with depression among prisoners in southern Ethiopia: a cross-sectional study
Creators: name: Asres Bedaso
name: Gemechu Kediro
name: Tebikew Yeneabat
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1. Chronic Medical Illness among Prisoner in Hawassa Central Correctional Institution, SNNPR, 2018.
title: ReProVide: Query Optimisation and Near-Data Processing on Reconfigurable SoCs for Big Data Analysis
Creators: name: Hahn, Tobias
name: Langohr, Maximilian
name: Meißner, Stefan
name: Döring, Benedikt
name: Wildermann, Stefan
name: Meyer-Wegener, Klaus
name: Teich, Jürgen
Publisher: name: Gesellschaft für Informatik, Bonn
Year: 2025

description: The goal of ReProVide is to provide novel hardware and optimisation techniques for scalable, high-performance processing of Big Data. The Programmable System-on-Chip (PSoC) architecture of ReProVide includes a reconfigurable FPGA for the support of hardware accelerators for various operators on relational and streaming data. Such PSoCs can be used to process data directly at the source, such as data from attached NVMes, using application-specific accelerators. For example, compute-intensive tasks such as JSON parsing can be offloaded to the hardware accelerators, reducing CPU load. In addition, reducing the volume of data at an early stage avoids unnecessary data movements, resulting in lower energy consumption. This demo illustrates the opportunities and benefits of hardware-reconfigurable, FPGA-based PSoCs for near-data processing. The demo allows users to run two queries and select which operations should be pushed onto the SoC for near-data hardware acceleration. From no acceleration to maximum acceleration, a 52x improvement in throughput and 67x lower energy consumption can be observed.
Coupling diode laser desorption with plasma ionization in mass spectrometry for analytical and biomedical applications
Creators: name: Knodel, Alexander
Publisher: name: TU Dortmund
Year: 2021
Subjects: subject: Diode laser desorption
subject: Plasma ionization
subject: Ambient mass spectrometry
subject: 530
subject: Laser

description: This thesis focuses on the coupling of laser desorption with plasma ionization in mass spectrometry for analytical and biomedical applications. A diode laser is used to trigger thermal desorption of substances from a surface. For this reason, a metal-isolator sandwich structure is developed and conceptually tuned to analytical demands on the basis of a microscope slide, lithography and sputtering. The neutral desorbate is then ionized by a flexible, atmospheric pressure micro plasma and is finally detected by a mass spectrometer. Different analyte classes are investigated to evaluate the method, ranging from analytical standards to complex samples. These insights are extended to an automated imaging of biological tissue, which requires an adaption of the substrate design. The inherent laser-based and thermal surface effects are intensively studied and optimized to the imaging. As a result, the imaging of biological samples is simplified, faster and can be carried out in ambient air without the need of a chemical matrix, which can be applied to routine analysis in life sciences. The limits of the method are finally evaluated.
description: Diese Arbeit beschäftigt sich mit der Kopplung von Laser-Desorption mit Plasma-Ionisierung für die Massenspektrometrie von analytischen und biomedizinischen Proben. Bei dieser Messmethodik wird ein Diodenlaser zur thermisch gesteuerten Desorption von Proben von einer Oberfläche benutzt. Auf Basis von Objektträgern, der Lithografie und der Kathodenzerstäubung wird eine zweilagige Metall-Isolator Substratstruktur für die Laser-Desorption entwickelt und auf die analytischen Anforderungen optimiert. Das durch die Laser-Desorption entstehende neutrale Desorbat wird mittels eines flexiblen, bei Atmosphärendruck arbeitenden Mikroplasmas ionisiert und schließlich mit einem Massenspektrometer detektiert. Die Methode wird an verschiedenen Analytklassen evaluiert, die von analytischen Standards bis zu komplexen Proben reichen. Als Erweiterung der analytischen Standards wird eine automatisierte Bildgebung an biologischen Proben vorgestellt, welche eine abgewandelte Substratstruktur erfordert. Die damit einhergehenden Laser-basierten und thermischen Oberflächeneffekte werden untersucht und zur Optimierung der Methodik herangezogen. Dadurch lassen sich biologische Proben einfacher, schneller und unter Umgebungsbedingungen ohne chemische Matrix untersuchen, was in der Routineanalytik in den Lebenswissenschaften Anwendung finden kann. Schließlich werden die Grenzen der Messmethode eruiert.
title: Data-driven Database Engineering at Snowflake
Creators: name: Heimel, Max
Publisher: name: Gesellschaft für Informatik, Bonn
Year: 2025

description: Snowflake’s cloud-native data platform processes billions of queries daily and scans petabytes of data, creating unique database engineering challenges. As a service-oriented platform, we rely on detailed query telemetry, workload replay, and staged rollouts to drive continuous engine innovation. This talk highlights two projects from our Berlin engineering team that exemplify this data-driven approach to database engineering. First, we examine how query telemetry and workload analysis informed the transformation of Snowflake’s analytical execution engine to handle transactional-scale throughput. Second, we explore the redesign of Snowflake’s dynamic join strategy, replacing a static method with a holistic, adaptive algorithm. Through rigorous testing, workload replay, and incremental rollouts, we ensured a smooth production transition for customers. By examining these case studies, we provide practical insights into the intersection of database research and large-scale system engineering. The lessons learned highlight how data-driven methods can effectively address complex engineering challenges in modern database systems, offering perspectives relevant to both academic researchers and industry practitioners.
MOESM2 of Factors associated with depression among prisoners in southern Ethiopia: a cross-sectional study
Creators: name: Asres Bedaso
name: Gemechu Kediro
name: Tebikew Yeneabat
Publisher: name: figshare
Year: 2018
Subjects: subject: Molecular Biology
subject: Biotechnology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 2. Severity of depression among prisoners in Hawassa Central Correctional Institution, SNNPR, Ethiopia, 2018 (nâ =â 335).
Coccinella 5-punctata Linnaeus, 1758, spec. nov.
Creators: name: Linnaeus, Carolus
Publisher: name: Laurentius Salvius
Year: 1758
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Coccinellidae
Coccinella
Coccinella 5-Punctata

description: Coccinella 5-punctata [spec. nov.]
C. coleoptris sanguineis: punctis nigris quinque. Fn. svec. 392.
Habitat in Pruno spinosa.
Elytra sanguinea sunt.
description: Published as part of Linnaeus, Carolus, 1758, Systema Naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Stockholm :Laurentius Salvius on page 365, DOI: 10.5962/bhl.title.542, http://zenodo.org/record/3922206
What Sets the Slope of the Molecular Kennicutt-Schmidt Relation?
Creators: name: Semenov, Vadim A.
name: Kravtsov, Andrey V.
name: Gnedin, Nickolay Y.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: The surface densities of molecular gas, $Σ_{\rm H_2}$, and the star formation rate (SFR), $\dotΣ_\star$, correlate almost linearly on kiloparsec scales in observed star-forming (non-starburst) galaxies. We explore the origin of the linear slope of this correlation using a suite of isolated $L_\star$ galaxy simulations. We show that in simulations with efficient feedback, the slope of the $\dotΣ_\star$-$Σ_{\rm H_2}$ relation on kiloparsec scales is insensitive to the slope of the $\dotρ_\star$-$ρ$ relation assumed at the resolution scale. We also find that the slope on kiloparsec scales depends on the criteria used to identify star-forming gas, with a linear slope arising in simulations that identify star-forming gas using a virial parameter threshold. This behavior can be understood using a simple theoretical model based on conservation of interstellar gas mass as the gas cycles between atomic, molecular, and star-forming states under the influence of feedback and dynamical processes. In particular, we show that the linear slope emerges when feedback efficiently regulates and stirs the evolution of dense, molecular gas. We show that the model also provides insights into the likely origin of the relation between the SFR and molecular gas in real galaxies on different scales.
description: 14 pages + appendix, 15 figures; accepted for publication in the Astrophysical Journal
Moderators and mediators of emotion regulation therapy for psychologically distressed caregivers of cancer patients: secondary analyses from a randomized controlled trial
Creators: name: O’Toole, Mia S.
name: Mennin, Douglas. S.
name: Applebaum, Allison J.
name: Fresco, David M.
name: Zachariae, Robert
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Being an informal caregiver (IC) of a cancer patient is often associated with psychological distress. We have recently, in a randomized controlled trial (RCT), demonstrated efficacy of Emotion Regulation Therapy for ICs (ERT-C), evidenced as lower levels of psychological distress. Such efficacy demonstration is important, but a crucial step in improving treatments for the IC population is the identification of moderators (i.e., for whom the treatment works) and mediators (i.e., the drivers of the detected effect). In a sample of 65 psychologically distressed ICs (combining participants who received immediate and delayed treatment in the RCT); we investigated age, gender, and homework completion as moderators of treatment outcome. Proposed mediators were derived from the ERT model and included mindfulness, emotion regulation dysfunction, decentering, and cognitive reappraisal. The strongest moderation effect was found for homework completion, predicting improvements on psychological distress. Correlational mediation analyses generally supported the ERT model. However, temporal precedence was only established for the association between decentering and worry, where a bidirectional relation was revealed. Homework thus emerged as an important aspect of ERT-C and, albeit a bidirectional relationship, changes in decentering may precede changes in worry. Future trials should ensure the robustness of these results, hone the specificity of process measures, and further investigate the causal timeline of change.
title: GLLM: Self-Corrective G-Code Generation using Large Language Models with User Feedback
Creators: name: Abdelaal, Mohamed
name: Lokadjaja, Samuel
name: Engert, Gilbert
Publisher: name: Gesellschaft für Informatik, Bonn
Year: 2025

description: This paper introduces GLLM, an innovative tool that leverages Large Language Models (LLMs) to automatically generate G-code from natural language instructions for Computer Numerical Control (CNC) machining. GLLM addresses the challenges of manual G-code writing by bridging the gap between human-readable task descriptions and machine-executable code. The system incorporates a fine-tuned StarCoder-3B model, enhanced with domain-specific training data and a Retrieval-Augmented Generation (RAG) mechanism. GLLM employs advanced prompting strategies and a novel self-corrective code generation approach to ensure both syntactic and semantic correctness of the generated G-code. The architecture includes robust validation mechanisms, including syntax checks, G-code-specific verifications, and functional correctness evaluations using Hausdorff distance. By combining these techniques, GLLM aims to democratize CNC programming, making it more accessible to users without extensive programming experience while maintaining high accuracy and reliability in G-code generation
Renormalizing Partial Differential Equations
Creators: name: Bricmont, J.
name: Kupiainen, A.
Publisher: name: arXiv
Year: 1994
Subjects: subject: Chaotic Dynamics (nlin.CD)
subject: FOS: Physical sciences

description: In this review paper, we explain how to apply Renormalization Group ideas to the analysis of the long-time asymptotics of solutions of partial differential equations. We illustrate the method on several examples of nonlinear parabolic equations. We discuss many applications, including the stability of profiles and fronts in the Ginzburg-Landau equation, anomalous scaling laws in reaction-diffusion equations, and the shape of a solution near a blow-up point.
description: 34 pages, Latex; bricmont@fyma.ucl.ac.be; ajkupiai@cc.helsinki.fi
title: RAGONITE: Iterative Retrieval on Induced Databases and Verbalized RDF for Conversational QA over KGs with RAG
Creators: name: Saha Roy, Rishiraj
name: Hinze, Chris
name: Schlotthauer, Joel
name: Naderi, Farzad
name: Hangya, Viktor
name: Foltyn, Andreas
name: Hahn, Luzian
name: Kuech, Fabian
Publisher: name: Gesellschaft für Informatik, Bonn
Year: 2025

description: Conversational question answering (ConvQA) is a convenient means of searching over RDF knowledge graphs (KGs), where a prevalent approach is to translate natural language questions to SPARQL queries. However, SPARQL has certain shortcomings: (i) it is brittle for complex intents and conversational questions, and (ii) it is not suitable for more abstract needs. Instead, we propose a novel two-pronged system where we fuse: (i) SQL-query results over a database automatically derived from the KG, and (ii) text-search results over verbalizations of KG facts. Our pipeline supports iterative retrieval: when the results of any branch are found to be unsatisfactory, the system can automatically opt for further rounds. We put everything together in a retrieval augmented generation (RAG) setup, where an LLM generates a coherent response from accumulated search results. We demonstrate the superiority of our proposed system over several baselines on a knowledge graph of BMW automobiles.
Hamiltonian structure of bi-gravity, problem of ghost and bifurcation
Creators: name: Molaee, Zahra
name: Shirzad, Ahmad
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We analyze the Hamiltonian structure of a general theory of bi-gravity where the interaction term is a scalar function of the form $ V(\mathcal{X}^{n}) $ where $ \mathcal{X} $ may be $\sqrt{g^{-1}f} $ or $ g^{-1}f $. We give necessary conditions for the interaction term of such a theory to be ghost free. We give a precise constraint analysis of the bi-gravity theory of Hassan- Rosen and show that the additional constraint which omit the ghost is just one possibility at the bifurcation point.
description: 19 pages, published version
title: A Data Quality Dashboard for (Security) Knowledge Graphs
Creators: name: Pizhuk, Davyd
name: Ehrlinger, Lisa
name: Denk, Gandalf
name: Geist, Verena
Publisher: name: Gesellschaft für Informatik, Bonn
Year: 2025

description: Knowledge graphs play a crucial role in storing and reusing domain knowledge for data analytics. For example, knowledge graphs can be used to model security domain knowledge (such as technical standards) to support software architects in developing secure software systems. Assessing and assuring the quality of the data in these graphs is critical to enable trust in the use of this machine-readable domain knowledge, and to ensure high-quality results for downstream tasks that build on this knowledge. In this paper, we present a visual data quality dashboard, which allows domain experts to verify the quality of their domain knowledge graph along different dimensions. We demonstrate the use of the dashboard by means of a previously built security knowledge graph.
La dynamique économique territoriale du pôle Casamance : une analyse par le quotient de localisation et le ratio de friction de la distance
Creators: name: DIATTA, Nicolas Eguandene
name: NDIAYE, Cheikh Tidiane
Publisher: name: Zenodo
Year: 2024
Subjects: développement ; dynamique économique ; pôle ; quotient de localisation ; ratio de friction

description: Le projet de réforme dénommé « Acte III de la décentralisation » initié par l’Etat en 2013 a pour but d’organiser le Sénégal en territoires viables, compétitifs et porteurs de développement durable et la région de la Casamance sera le pôle pilote pour l’application de la réforme. A la lumière de nos recherches nous présentons quelques indicateurs sociodémographiques et économiques pour voir de façon claire l’aspect socio-démographique et économique de la Casamance.

Notre analyse se base fondamentalement sur le quotient de localisation, afin de distinguer la spécialisation des régions par secteur économique et sur le ratio de friction pour dégager l’interaction des flux entre les régions.

Nos résultats montrent que le secteur primaire représente le levier phare de la dynamique économique territoriale en Casamance, même si nous notons quelques disparités entre les régions sur certaines branches d’activités. L’interaction des flux présente un solde migratoire positif à Ziguinchor et négatif à Sédhiou.