cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Assessing the detection of the Yarkovsky effect using Gaia DR3 and FPR catalogues
Creators: name: Dziadura, Karolina
name: Bartczak, Przemysław
name: Oszkiewicz, Dagmara
Publisher: name: arXiv
Year: 2024
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences
subject: 85A15, 85-08

description: The primary objective of this study was to utilize the newest Gaia FPR catalogue containing ultra-precise asteroid astrometry spanning over 66 months to detect the Yarkovsky effect, a non-gravitational acceleration that affects the orbits of small asteroids. Moreover, this study examines close approaches of near-Earth asteroids by comparing orbits calculated using the Gaia data. We used the conventional least-squares orbit computation method available in the OrbFit software. We used the latest Gaia Focused Product Release, complemented by data from the Minor Planet Center and radar astrometry from the Jet Propulsion Laboratory. We fitted orbital parameters for 446 Near-Earth Asteroids, including the additional non-gravitational transverse acceleration to model the Yarkovsky effect. Furthermore, we compared the results obtained using different datasets: Gaia Focused Product Release and the previous Gaia Data Release 3. We detected a robust Yarkovsky effect in 43 NEAs. As expected, we found an improvement in the orbital elements uncertainty and in the signal-to-noise ratio of the Yarkovsky effect detections when using the current Gaia FPR with double the observing arc compared to the DR3 catalog. We also found nine additional reliable detections of the Yarkovsky effect when using the new Gaia FPR catalog. Including the Yarkovsky effect in the force model can be important to reliably estimate close approach distances of near-Earth asteroids. Several of the detected Yarkovsky drifts already have a signal-to-noise ratio greater than 10, which is high enough for their Yarkovsky effect to be included in their reliable long-term orbital evolution, close approach, and Earth impact analysis. The final Gaia catalog may provide a much higher number of high signal-to-noise ratio detections of the Yarkovsky effect.
description: 8 pages, 6 figures, accepted at Astronomy & Astrophysics. This study uses the latest Gaia FPR catalogue to assess the detection of the Yarkovsky effect on NEAs, comparing results with previous data releases and emphasizing improvements in orbital determination and close-approach predictions
Constraints on the history of Galactic spiral arms revealed by Gaia GSP-Spec alpha-elements
Creators: name: Barbillon, M.
name: Recio-Blanco, A.
name: Poggio, E.
name: Palicio, P. A.
name: Spitoni, E.
name: de Laverny, P.
name: Cescutti, G.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: The distribution of chemical elements in the Galactic disc can reveal fundamental clues on the physical processes that led to the current configuration of our Galaxy. We map chemical azimuthal variations in the disc using individual stellar chemical abundances and discuss their possible connection with the spiral arms and other perturbing mechanisms. Using Gaia Data Release 3, we examine [Ca/Fe] and [Mg/Fe] fluctuations in a ~4 kpc region around the Sun, focusing on bright giant stars. We implemented a kernel density estimator technique to enhance the chemical inhomogeneities. We observe radial gradients and azimuthal fluctuations in [alpha/Fe] for young (<150 Myr) and old (>2 Gyr) stars, with amplitudes varying according to the studied element. In young stars, those within spiral arms (e.g., Sagittarius-Carina and Local arms) are generally more metal and calcium-rich (~0-0.19 dex) but show lower [Ca/Fe] (~0.06 dex) and [Mg/Fe] (~0.05 dex) compared to inter-arm regions, suggesting enhanced iron production in spiral arms. These [alpha/Fe] depletions are analysed in light of theoretical scenarios and compared to a 2D chemical evolution model with multiple spiral patterns. For the old sample, [Ca/Fe] maps reveal deficiencies along a segment of the Local arm identified by young stars. We caution that, for this old sample, the quality of the obtained maps might be limited along a specific line-of-sight, due to the Gaia scanning law. This study transitions our understanding of disc chemical evolution from a 1D radial view to a more detailed 2D framework incorporating radial, azimuthal, and small-scale variations. Individual chemical abundances prove essential for tracing spiral arms in disc galaxies. We recommend models and simulations incorporate alpha-abundance trends to better address spiral arm lifetimes.
title: Vergleichende Untersuchungen zu Richtlinien für die integrierte Kernobstproduktion in Europa
Creators: name: Schäfermeyer, Stephan
name: Dickler, Erich
Publisher: name: Parey
Year: 1991
Subjects: subject: Kernobstanbau
subject: Integrierter Obstbau
subject: Europäische Union
subject: Richtlinie
subject: 630

description: Mitteilungen aus der Biologischen Bundesanstalt für Land- und Forstwirtschaft, Berlin-Dahlem, vol. 271
Leptotrombidium (Leptotrombidium) hanseni Traub and Lakshana 1966
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Leptotrombidium
Leptotrombidium hanseni

description: Leptotrombidium (Leptotrombidium) hanseni Traub and Lakshana, 1966:
ORI
Leptotrombidium hanseni, Stekolnikov 2013 [scanloni group]; Kalúz et al. 2016; Stekolnikov 2021
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 130, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Black and White Patients with Inflammatory Bowel Disease Show Similar Biologic Use Patterns with Medicaid Insurance
Creators: name: Long, M.D
name: Bauer, C.M
name: Barnes, E.L
name: Kappelman, M.D
name: Sandler, R.S
Publisher: name: Oxford University Press
Year: 2021

description: Background: Prior studies have identified racial disparities in the treatment and outcomes of inflammatory bowel disease (IBD). These disparities could be secondary to differences in biology, care delivery, or access to appropriate therapy. The primary aim of this study was to compare medication use among Medicaid-insured black and white patients with IBD, given uniform access to gastroenterologists and therapies. Methods: We analyzed Medicaid Analytic eXtract data from 4 states (California, Georgia, North Carolina, and Texas) between 2006 and 2011. We compared the use of IBD-specific therapies, including analyses of postoperative therapy among patients with Crohn disease (CD). We performed bivariate analyses and multivariable logistic regression, adjusting for potential confounders. Results: We identified 14,735 patients with IBD (4672 black [32%], 8277 with CD [58%]). In multivariable analysis, there was no significant difference in the odds of anti-tumor necrosis factor use by race for CD (adjusted odds ratio [aOR] = 1.13; 95% confidence interval [CI], 0.99-1.28] or ulcerative colitis (aOR = 1.12; 95% CI, 0.96-1.32). Black patients with CD were more likely than white patients to receive combination therapy (aOR = 1.50; 95% CI, 1.15-1.96), and black patients were more likely than white patients to receive immunomodulator monotherapy after surgery for CD (31% vs 18%; P = 0.004). Conclusions: In patients with Medicaid insurance, where access to IBD-specific therapy should be similar for all individuals, there was no significant disparity by race in the utilization of IBD-specific therapies. Disparities in IBD treatment discussed in prior literature seem to be driven by socioeconomic or other issues affecting access to care.
Time to Antibiotic Administration for Neutropenic Fever in the Emergency Department
Creators: name: Nerenberg, Bronson
Publisher: name: Oregon Health and Science University
Year: 2024
Subjects: subject: Febrile Neutropenia
subject: Oregon--Portland
subject: Neutropenic Fever
subject: Emergency Department
subject: Antibiotic Administration
subject: Quality Improvement

description: Neutropenic fever, a common complication in cancer patients, requires prompt antibiotic treatment to prevent mortality. Current guidelines recommend antibiotic administration within 60 minutes of triage completion. However, many emergency departments (EDs) struggle to meet recommended treatment timeframes. This study in an academic medical center's ED analyzed 88 neutropenic fever cases, revealing a median time to antibiotic administration of 146 minutes, with only 7.95% meeting the 60-minute guideline. Factors like door-to-doctor time, time to antibiotic order placement, and antibiotic preparation time were found to affect time to antibiotic administration. No correlations were found between time to antibiotic administration and long-term patient outcomes in this study. Future initiatives should focus on reducing time from triage completion to antibiotic order placement to optimize patient outcomes and improve care for neutropenic fever patients in the ED.
Anguina paludicola Bertozzi & Davies, 2009, sp. n.
Creators: name: Bertozzi, Terry
name: Davies, Kerrie A.
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Nematoda
Secernentea
Tylenchida
Tylenchidae
Anguina
Anguina paludicola

description: Anguina paludicola sp. n.
Figures 2–3.
Measurements See Tables 3–5.
description: Published as part of Bertozzi, Terry & Davies, Kerrie A., 2009, Anguina paludicola sp. n. (Tylenchida: Anguinidae): The nematode associated with Rathayibacter toxicus infection in Polypogon monspeliensis and Lachnagrostis filiformis in Australia, pp. 33-46 in Zootaxa 2060 on page 37, DOI: 10.5281/zenodo.186813
Trigonaspis synaspis
Creators: name: Tataroğlu, Musa
name: Katilmiş, Yusuf
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Cynipidae
Trigonaspis
Trigonaspis synaspis

description: Trigonaspis synaspis (Hartig, 1841)
—Distribution in the Eastern Black Sea Region: Artvin, Bayburt, Giresun, GümüŞhane, Ordu and Rize (Figure 12)
—Host plants in the Eastern Black Sea Region: Q. macranthera, Q. petraea and Q. pubescens
—Remarks: previously, it was also recorded from Giresun (Mutun & Atay 2015).
description: Published as part of Tataroğlu, Musa & Katilmiş, Yusuf, 2024, Gall wasp (Cynipoidea: Cynipidae and Diplolepididae) fauna of the Eastern Black Sea Region (Türkiye), pp. 112-144 in Zootaxa 5468 (1) on page 128, DOI: 10.11646/zootaxa.5468.1.4, http://zenodo.org/record/11614837
title: 48. Deutsche Pflanzenschutz-Tagung: in Göttingen, 5. - 8. Oktober 1992
Creators: name: Deutsche Pflanzenschutz-Tagung 48 1992 Göttingen
Publisher: name: Parey
Year: 1992
Subjects: subject: Plants, Protection ofCongresses
subject: Plants, Protection ofGermanyCongresses
subject: Pflanzenschutz
subject: 630

description: Mitteilungen aus der Biologischen Bundesanstalt für Land- und Forstwirtschaft, Berlin-Dahlem, vol. 283
Investigating explosive events in a 3D quiet-Sun model: Transition region and coronal response
Creators: name: Chen, Yajie
name: Peter, Hardi
name: Przybylski, Damien
Publisher: name: arXiv
Year: 2024
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Transition region explosive events are characterized by non-Gaussian profiles of the emission lines formed at transition region temperatures, and they are believed to be manifestations of small-scale reconnection events in the transition region. We took a 3D self-consistent quiet-Sun model extending from the upper convection zone to the lower corona calculated using the MURaM code. We first synthesized the Si IV line profiles from the model and then located the profiles which show signatures of bi-directional flows. These tend to appear along network lanes, and most do not reach coronal temperatures. We isolated two hot (around 1 MK) events and one cool (order of 0.1 MK) event and examined the magnetic field evolution in and around these selected events. Furthermore, we investigated why some explosive events reach coronal temperatures while most remain cool. The field lines around two events reconnect at small angles, i.e., they undergo component reconnection. The third case is associated with the relaxation of a highly twisted flux rope. All of the three events reveal signatures in the synthesized EUI 174 Å images. The intensity variations in two events are dominated by variations of the coronal emissions, while the cool component seen in the respective channel contributes significantly to the intensity variation in one case. Comparing to the cool event, one hot event is embedded in regions with higher magnetic field strength and heating rates while the densities are comparable, and the other hot event is heated to coronal temperatures mainly because of the low density. Small-scale heating events seen in EUV channels of AIA or EUI might be hot or cool. Our results imply that the major difference between the events in which coronal counterparts dominate or not is the amount of converted magnetic energy and/or density in and around the reconnection region.
description: Accepted for publication in A&A
Periclistus brandtii
Creators: name: Tataroğlu, Musa
name: Katilmiş, Yusuf
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Cynipidae
Periclistus
Periclistus brandtii

description: Periclistus brandtii (Ratzeburg, 1832)
—Distribution in the Eastern Black Sea Region: Artvin, Bayburt, GümüŞhane and Rize (Figure 16)
—Host galls in the Eastern Black Sea Region: D. fructuum, D. rosae and D. spinosissimae.
description: Published as part of Tataroğlu, Musa & Katilmiş, Yusuf, 2024, Gall wasp (Cynipoidea: Cynipidae and Diplolepididae) fauna of the Eastern Black Sea Region (Türkiye), pp. 112-144 in Zootaxa 5468 (1) on page 131, DOI: 10.11646/zootaxa.5468.1.4, http://zenodo.org/record/11614837
The Construction of “Chineseness’ in Avant-Garde Art during the Last Decade of the 20th Century
Creators: name: Ren, Xiangnuo
Publisher: name: University of Leicester
Year: 2025

description: The aim of this study has been to examine developments in Chinese avant-garde art in the last decade of the twentieth century, looking particularly at how these practices manifested and deployed a sense of “Chineseness”.This research pursues three fundamental objectives. Firstly, it investigates the “Chineseness” implied in avant-garde artworks. Secondly, it intends to compare the motivations and influential elements that shape Chinese cultural identities both in the domestic and global contexts. Thirdly, it discusses the perception of Chinese avant-garde art and its cultural identity in art criticisms and institutions. Aiming to explore how Chinese avant-garde art was shaped by and shaped Chinese cultural identity during the final decade of the 20th century, this thesis has examined both the theoretical and practical aspects of artistic engagement at home and overseas.
Analysis of solar eruptions deflecting in the low corona: influence of the magnetic environment
Creators: name: Sahade, A.
name: Vourlidas, A.
name: Mac Cormack, C.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Coronal mass ejections (CMEs) can exhibit non-radial evolution. The background magnetic field is considered the main driver for the trajectory deviation relative to the source region. The influence of the magnetic environment has been largely attributed to the gradient of the magnetic pressure. In this work, we propose a new approach to investigate the role of topology on CME deflection and to quantify and compare the action between the magnetic field gradient (`gradient' path) and the topology (`topological' path).
 We investigate 8 events simultaneously observed from Solar Orbiter, STEREO-A and SDO; and, with a new tracking technique, we reconstruct the 3D evolution of the eruptions. Then, we compare their propagation with the predictions from the two magnetic drivers. We find that the `topological' path describes the CME actual trajectory much better than the more traditional `gradient path'.
 Our results strongly indicate that the ambient topology may be the dominant driver for deflections in the low corona, and that presents a promising method to estimate the direction of propagation of CMEs early in their evolution.
description: Accepted ApJ
Additional file 1: Table S1. of Development of quality indicators for non-small cell lung cancer care: a first step toward assessing and improving quality of cancer care in China
Creators: name: Xinyu Wang
name: Shaofei Su
name: Shouyi Li
name: Bao, Han
name: Meiqi Zhang
name: Liu, Dan
name: Jiang, Hao
name: Jiaying Wang
name: Liu, Meina
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Potential indicators extracted from guidelines and literatures. Table S2. Definition of the final 21 indicators. (DOCX 54 kb)
Teapot: Efficiently Uncovering Spectre Gadgets in COTS Binaries
Creators: name: Lin, Fangzheng
name: Wang, Zhongfa
name: Sasaki, Hiroshi
Publisher: name: arXiv
Year: 2024
Subjects: subject: Cryptography and Security (cs.CR)
subject: Hardware Architecture (cs.AR)
subject: FOS: Computer and information sciences

description: Speculative execution is crucial in enhancing modern processor performance but can introduce Spectre-type vulnerabilities that may leak sensitive information. Detecting Spectre gadgets from programs has been a research focus to enhance the analysis and understanding of Spectre attacks. However, one of the problems of existing approaches is that they rely on the presence of source code (or are impractical in terms of run-time performance and gadget detection ability).
 This paper presents Teapot, the first Spectre gadget scanner that works on COTS binaries with comparable performance to compiler-based alternatives. As its core principle, we introduce Speculation Shadows, a novel approach that separates the binary code for normal execution and speculation simulation in order to improve run-time efficiency.
 Teapot is based on static binary rewriting. It instruments the program to simulate the effects of speculative execution and also adds integrity checks to detect Spectre gadgets at run time. By leveraging fuzzing, Teapot succeeds in efficiently detecting Spectre gadgets. Evaluations show that Teapot outperforms both performance (more than 20x performant) and gadget detection ability than a previously proposed binary-based approach.
description: To appear in ACM/IEEE International Symposium on Code Generation and Optimization (CGO) 2025
Transmural Inflammation, Ileitis, and Granulomas at the Time of Proctocolectomy in Patients with Ulcerative Colitis Do Not Predict Future Development of Pouchitis
Creators: name: Koruda, M
name: Kochar, B
name: Herfarth, H.H
name: Barnes, E.L
name: Long, M.D
name: Kappelman, M.D
name: Esckilsen, S
name: Sandler, R.S
name: Hudson, J
Publisher: name: S. Karger AG
Year: 2021

description: Background: The most common complication following ileal pouch-anal anastomosis (IPAA) in patients with ulcerative colitis (UC) is pouchitis. Our study aimed to investigate the relationship between histopathologic findings of ileitis, granuloma, or transmural inflammation on the colectomy specimen of patients with clinically and endoscopically diagnosed UC and the development of pouchitis within the first 2 years after IPAA. Methods: We performed a retrospective cohort study evaluating patients undergoing colectomy with IPAA for UC between January 1, 2004 and December 31, 2016. Bivariate analyses were conducted to evaluate the relationship between clinical factors and the development of pouchitis. We performed multivariate logistic regression to evaluate the relationship between histologic, clinical, and demographic factors at the time of colectomy and subsequent development of pouchitis. Results: Among 626 patients, pouchitis occurred in 246 (39%). Patients with primary sclerosing cholangitis were more likely to develop pouchitis (adjusted odds ratio [aOR] 2.81, 95% confidence interval [CI] 1.02-7.72), as were patients with a family history of inflammatory bowel disease (aOR 1.75, 95% CI 1.11-2.77). Histologic findings of ileitis, granuloma, or transmural inflammation were not associated with an increased odds of developing pouchitis (aOR 0.70, 95% CI 0.45-1.08). Discussion/Conclusion: Patients with ileitis, granulomas, or transmural inflammation at the time of colectomy were not at greater risk for development of pouchitis in the 2 years after IPAA. These pathological findings should not preclude IPAA for UC.
title: Untersuchungen zur Prüfung der Vergleichbarkeit des Rückstandsverhaltens von ausgewählten Pflanzenschutzmittel-Wirkstoffen an verschiedenen Erntegütern: [Mit engl. Zsfassung.]
Creators: name: Lundehn, Jörg-Rainer
Publisher: name: Parey
Year: 1990
Subjects: subject: Obst
subject: Pflanzenschutzmittel
subject: Rückstandsanalyse
subject: Gemüse
subject: 630

description: Mitteilungen aus der Biologischen Bundesanstalt für Land- und Forstwirtschaft, Berlin-Dahlem, vol. 263
Additional file 6: Figure S5. of Isolation of ripening-related genes from ethylene/1-MCP treated papaya through RNA-seq
Creators: name: Shen, Yan
name: Lu, Bing
name: Feng, Li
name: Yang, Fei
name: Geng, Jiao
name: Ming, Ray
name: Chen, Xiao
Publisher: name: Figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: General pathway of carotenoid metabolism. (DOCX 26Â kb)
Homogeneous planet masses I: Reanalysis of archival HARPS radial velocities
Creators: name: Osborne, H. L. M.
name: Nielsen, L. D.
name: Van Eylen, V.
name: Barragán, O.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Empirical exoplanet mass-radius relations have been used to study the demographics and compositions of small exoplanets for many years. However, the heterogeneous nature of these measurements hinders robust statistical analysis of this population, particularly with regard to the masses of planets. For this reason, we perform a homogeneous and consistent re-analysis of the radial velocity (RV) observations of 85 small exoplanets using publicly available HARPS RV data and the fitting toolkit Pyaneti. For the entire sample, we run 12 different models to investigate the impact of modelling choices, including the use of multi-dimensional Gaussian Processes (GPs) to mitigate stellar activity. We find that the way orbital eccentricity is modelled can significantly impact the RV amplitude found in some cases. We also find that the addition of a GP to mitigate stellar activity does impact the RV amplitude found - though if the GP is modelled on activity indicators as well as the RVs the results are more robust. The RV amplitude found for every planet in our sample using all the models is made available for other groups to perform demographics studies. Finally, we provide a list of recommendations for the RV community moving forward.
description: Accepted for publication in A&A
Phanacis ciceki Azmaz
Creators: name: Tataroğlu, Musa
name: Katilmiş, Yusuf
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Cynipidae
Phanacis
Phanacis ciceki

description: Phanacis ciceki Azmaz & KatılmıŞ, 2021—
Distribution in the Eastern Black Sea Region: GümüŞhane (Figure 12)
—Host plant in the Eastern Black Sea Region: Picris sp. (Asteraceae)
—Remarks: the species was originally described from the Region (Azmaz & KatılmıŞ 2021a).
description: Published as part of Tataroğlu, Musa & Katilmiş, Yusuf, 2024, Gall wasp (Cynipoidea: Cynipidae and Diplolepididae) fauna of the Eastern Black Sea Region (Türkiye), pp. 112-144 in Zootaxa 5468 (1) on page 131, DOI: 10.11646/zootaxa.5468.1.4, http://zenodo.org/record/11614837
Additional file 6: Figure S5. of Isolation of ripening-related genes from ethylene/1-MCP treated papaya through RNA-seq
Creators: name: Shen, Yan
name: Lu, Bing
name: Feng, Li
name: Yang, Fei
name: Geng, Jiao
name: Ming, Ray
name: Chen, Xiao
Publisher: name: Figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: General pathway of carotenoid metabolism. (DOCX 26Â kb)
The GAPS Programme at TNG. LXV. Precise density measurement of TOI-1430 b, a young planet with an evaporating atmosphere
Creators: name: Nardiello, D.
name: Murphy, J. M. Akana
name: Spinelli, R.
name: Baratella, M.
name: Desidera, S.
name: Nascimbeni, V.
name: Malavolta, L.
name: Biazzo, K.
name: Maggio, A.
name: Locci, D.
name: Benatti, S.
name: Batalha, N. M.
name: D'Orazi, V.
name: Borsato, L.
name: Piotto, G.
name: Oelkers, R. J.
name: Mallonn, M.
name: Sozzetti, A.
name: Bedin, L. R.
name: Mantovan, G.
name: Zingales, T.
name: Affer, L.
name: Bignamini, A.
name: Bonomo, A. S.
name: Cabona, L.
name: Collins, K. A.
name: Damasso, M.
name: Filomeno, S.
name: Ghedina, A.
name: Harutyunyan, A.
name: Lanza, A. F.
name: Mancini, L.
name: Rainer, M.
name: Scandariato, G.
name: Schwarz, R. P.
name: Sefako, R.
name: Srdoc, G.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: Small-sized exoplanets in tight orbits around young stars (10-1000 Myr) give us the opportunity to investigate the mechanisms that led to their formation, the evolution of their physical and orbital properties and, especially, of their atmospheres. Thanks to the all-sky survey carried out by TESS, many of these exoplanets have been discovered and have subsequently been characterized with dedicated follow-up observations. In the context of a collaboration among the GAPS, TKS and CPS teams, we measured with a high level of precision the mass and the radius of TOI-1430 b, a young (~700 Myr) exoplanet with an escaping He atmosphere orbiting the K-dwarf star HD 235088 (TOI-1430). By adopting appropriate stellar parameters, which were measured in this work, we were able to simultaneously model the signals due to strong stellar activity and the transiting planet TOI-1430 b in both photometric and spectroscopic series. This allowed us to measure the density of the planet with high precision, and reconstruct the evolution of its atmosphere. TOI-1430 is an active K-dwarf star born 700+/-150 Myr ago and rotates in ~12 d. It hosts a mini-Neptune whose orbital period is Pb=7.434133+/-0.000004 d. Thanks to long-term monitoring of this target performed with TESS, HARPS-N, HIRES, and APF, we estimated a radius Rb=1.98+/-0.07 $R_{\oplus}$, a mass Mb=4.2+/-0.8 $M_{\oplus}$, and thus a planetary density $ρ$b=0.5+/-0.1 $ρ_{\oplus}$. TOI-1430 b is hence a low-density mini-Neptune with an extended atmosphere, at the edge of the radius gap. Because this planet is known to have an evaporating atmosphere of He, we reconstructed its atmospheric history. Our analysis supports the scenario in which, shortly after its birth, TOI-1430 b may have been super-puffy, with a radius 5x-13x and a mass 1.5x-2x that of today; in ~200 Myr from now, TOI-1430 b should lose its envelope, showing its Earth-size core.
description: 30 pages, 19 figures, 8 tables. Accepted for publication in Astronomy & Astrophysics on 16 November 2024. Electronic material (tables G1-G3) will soon be available on the CDS or upon request to the first author. Abstract shortened
title: High performance liquid chromatography of pesticides: tabular literature abstracts II, 2, Tabular literature abstracts
Creators: name: Prakash, Satya
name: Ebing, Winfried
Publisher: name: Parey
Year: 1991
Subjects: subject: Pestizid
subject: HPLC
subject: 540

description: Mitteilungen aus der Biologischen Bundesanstalt für Land- und Forstwirtschaft, Berlin-Dahlem, vol. 270
Phanacis urhani Azmaz
Creators: name: Tataroğlu, Musa
name: Katilmiş, Yusuf
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Cynipidae
Phanacis
Phanacis urhani

description: Phanacis urhani Azmaz & KatılmıŞ, 2021—
Distribution in the Eastern Black Sea Region: Ordu (Figure 12)
— Host plant in the Eastern Black Sea Region: Cirsium vulgare (Savi) Ten. (Asteraceae)
—Remarks: the species was originally described from the Region (Azmaz & KatılmıŞ 2021a).
description: Published as part of Tataroğlu, Musa & Katilmiş, Yusuf, 2024, Gall wasp (Cynipoidea: Cynipidae and Diplolepididae) fauna of the Eastern Black Sea Region (Türkiye), pp. 112-144 in Zootaxa 5468 (1) on page 131, DOI: 10.11646/zootaxa.5468.1.4, http://zenodo.org/record/11614837
Nongenetic Determinants of Risk for Early-Onset Colorectal Cancer
Creators: name: Murphy, N.
name: Sakoda, L.C
name: Gruber, S.B
name: Hayes, R.B.
name: Sandler, R.S
name: Chang-Claude, J
name: Hoffmeister, M
name: Pai, R
name: Archambault, A.N
name: Moreno, V
name: Slattery, M.L
name: Figueiredo, J.C
name: Woods, M.O
name: Zeleniuch-Jacquotte, A.
name: Campbell, P.T
name: Newcomb, P.A
name: Hsu, L.
name: Jeon, J
name: Marchand, L.L
name: Du, M.
name: Jenkins, M.A
name: Lin, Y
name: Brenner, H
name: Harrison, T.A
name: Win, A.K
name: Chan, A.T
name: Li, L
name: Song, M.
name: Rennert, G
name: Casey, G
name: Su, Y.-R.
name: Gunter, M.J
name: Gallinger, S
name: Parfrey, P.S
name: Keku, T.O
name: Liang, P.S.
name: Bishop, D.T
name: Peters, U.
Publisher: name: Oxford University Press
Year: 2021

description: Background: Incidence of early-onset (younger than 50 years of age) colorectal cancer (CRC) is increasing in many countries. Thus, elucidating the role of traditional CRC risk factors in early-onset CRC is a high priority. We sought to determine whether risk factors associated with late-onset CRC were also linked to early-onset CRC and whether association patterns differed by anatomic subsite. Methods: Using data pooled from 13 population-based studies, we studied 3767 CRC cases and 4049 controls aged younger than 50 years and 23 437 CRC cases and 35 311 controls aged 50 years and older. Using multivariable and multinomial logistic regression, we estimated odds ratios (ORs) and 95% confidence intervals (CIs) to assess the association between risk factors and early-onset CRC and by anatomic subsite. Results: Early-onset CRC was associated with not regularly using nonsteroidal anti-inflammatory drugs (OR = 1.43, 95% CI = 1.21 to 1.68), greater red meat intake (OR = 1.10, 95% CI = 1.04 to 1.16), lower educational attainment (OR = 1.10, 95% CI = 1.04 to 1.16), alcohol abstinence (OR = 1.23, 95% CI = 1.08 to 1.39), and heavier alcohol use (OR = 1.25, 95% CI = 1.04 to 1.50). No factors exhibited a greater excess in early-onset compared with late-onset CRC. Evaluating risks by anatomic subsite, we found that lower total fiber intake was linked more strongly to rectal (OR = 1.30, 95% CI = 1.14 to 1.48) than colon cancer (OR = 1.14, 95% CI = 1.02 to 1.27; P =. 04). Conclusion: In this large study, we identified several nongenetic risk factors associated with early-onset CRC, providing a basis for targeted identification of those most at risk, which is imperative in mitigating the rising burden of this disease.
Additional file 5: Figure S4. of Isolation of ripening-related genes from ethylene/1-MCP treated papaya through RNA-seq
Creators: name: Shen, Yan
name: Lu, Bing
name: Feng, Li
name: Yang, Fei
name: Geng, Jiao
name: Ming, Ray
name: Chen, Xiao
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: KEGG graph of carotenoid biosynthesis pathway. A, CG-vs-ETH; B, CG-vs-1-MCP. The CruA indicates lycopene beta/epsilon cyclase protein (evm.TU.supercontig_132.5); The CrtR and CrtZ indicate beta-carotene hydroxylase (evm.TU.supercontig_107.106). (DOCX 57Â kb)
Additional file 5: Figure S4. of Isolation of ripening-related genes from ethylene/1-MCP treated papaya through RNA-seq
Creators: name: Shen, Yan
name: Lu, Bing
name: Feng, Li
name: Yang, Fei
name: Geng, Jiao
name: Ming, Ray
name: Chen, Xiao
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: KEGG graph of carotenoid biosynthesis pathway. A, CG-vs-ETH; B, CG-vs-1-MCP. The CruA indicates lycopene beta/epsilon cyclase protein (evm.TU.supercontig_132.5); The CrtR and CrtZ indicate beta-carotene hydroxylase (evm.TU.supercontig_107.106). (DOCX 57Â kb)
How do supernova remnants cool? II. Machine learning analysis of supernova remnant simulations
Creators: name: Smirnova, P.
name: Makarenko, E. I.
name: Clarke, S. D.
name: Glukhov, E.
name: Walch, S.
name: Vaezzadeh, I.
name: Seifried, D.
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: About 15%-60% of all supernova remnants are estimated to interact with dense molecular clouds. In these high density environments, radiative losses are significant. The cooling radiation can be observed in forbidden lines at optical wavelengths. We aim to determine whether supernovae at different positions within a molecular cloud can be distinguished based on their optical emission, using machine learning. We have conducted a statistical analysis of the optical line emission of simulated supernovae interacting with molecular clouds that formed from the multi-phase interstellar medium modelled in the SILCC-Zoom simulations with and without magnetic fields. This work is based on the post-processing of 3-D (magneto)hydrodynamical simulations. Our data set consists of 22 simulations. The supernovae are placed at a distance of either 25 pc or 50 pc from the molecular cloud centre of mass. First, we calculate optical synthetic emission maps (taking into account dust attenuation within the simulation sub-cube). Second, we analyse the data set of synthetic observations using principle component analysis to identify clusters with the k-means algorithm. We find that the presence or absence of magnetic fields has no statistically significant effect on the optical line emission. However, the ambient density distribution at the site of the supernova changes the entire evolution and morphology of the supernova remnant. Due to the different ambient densities in the 25 pc and 50 pc simulations, we are able to distinguish them in a statistically significant manner. Although, optical line attenuation within the supernova remnant can mimic this result depending on the attenuation model that is used. That is why, multi-dimensional analysis of optical emission line ratios in this work does not give extra information about the environmental conditions (ambient density and ambient magnetic field) of the SNR.
description: 11 pages, 14 figures
The Sun at millimeter wavelengths V. Magnetohydrodynamic waves in a fibrillar structure
Creators: name: Saberi, Maryam
name: Jafarzadeh, Shahin
name: Wedemeyer, Sven
name: Gafeira, Ricardo
name: Szydlarski, Mikolaj
name: Jess, David
name: Stangalini, Marco
Publisher: name: arXiv
Year: 2024
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Magnetohydrodynamic (MHD) waves, playing a crucial role in transporting energy through the solar atmosphere, manifest in various chromospheric structures. Here, we investigated MHD waves in a long-lasting dark fibril using high-temporal-resolution (2~s cadence) Atacama Large Millimeter/submillimeter Array (ALMA) observations in Band 6 (centered at 1.25~mm). We detected oscillations in brightness temperature, horizontal displacement, and width at multiple locations along the fibril, with median periods and standard deviations of $240\pm114$~s, $225\pm102$~s, and $272\pm118$~s, respectively. Wavelet analysis revealed a combination of standing and propagating waves, suggesting the presence of both MHD kink and sausage modes. Less dominant than standing waves, oppositely propagating waves exhibit phase speeds (median and standard deviation of distributions) of $74\pm204$~km/s, $52\pm197$~km/s, and $28\pm254$~km/s for the three observables, respectively. This work demonstrates ALMA's capability to effectively sample dynamic fibrillar structures, despite previous doubts, and provides valuable insights into wave dynamics in the upper chromosphere.
An unusual phase transition in a non-Hermitian Su-Schrieffer-Heeger model
Creators: name: Niveth, A
name: Karthiga, S
name: Senthilvelan, M
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Physics (quant-ph)
subject: Other Condensed Matter (cond-mat.other)
subject: FOS: Physical sciences

description: This article studies a non-Hermitian Su-Schrieffer-Heeger (SSH) model which has periodically staggered Hermitian and non-Hermitian dimers. The changes in topological phases of the considered chiral symmetric model with respect to the introduced non-Hermiticity are studied where we find that the system supports only complex eigenspectra for all values of $u \neq 0$ and it stabilizes only non-trivial insulating phase for higher loss-gain strength. Even if the system acts as a trivial insulator in the Hermitian limit, the increase in loss-gain strength induces phase transition to non-trivial insulating phase through a (gapless) semi-metallic phase. Interesting phenomenon is observed in the case where Hermitian system acts as a non-trivial insulator. In such a situation, the introduced non-Hermiticity neither leaves the non-trivial phase undisturbed nor induces switching to trivial phase. Rather, it shows transition from non-trivial insulating phase to the same where it is mediated by the stabilization of (non-trivial) semi-metallic phase. This unusual transition between the non-trivial insulating phases through non-trivial semi-metallic phase gives rise to a question regarding the topological states of the system under open boundary conditions. So, we analyze the possibility of stable edge states in these two non-trivial insulating phases and check the characteristic difference between them. In addition, we study the nature of topological states in the case of non-trivial gapless (semi-metallic) region.
title: Epigäische Raubarthropoden in Winterweizenbeständen Mitteldeutschlands und ihre Beziehung zu Blattläusen
Creators: name: Volkmar, Christa
name: Bothe, Steffen
name: Kreuter, Thomas
name: Lübke-Al Hussein, Marita
name: Richter, Lutz
name: Heimbach, Udo
name: Wetzel, Theodor
Publisher: name: Blackwell
Year: 1994
Subjects: subject: Hötzum
subject: Winterweizen
subject: Gliederfüßer
subject: Getreideblattläuse
subject: Barnstädt
subject: Peißen
subject: Mitteldeutschland
subject: Räuberische Tiere
subject: Blattläuse
subject: Biologische Schädlingsbekämpfung
subject: 630

description: Mitteilungen aus der Biologischen Bundesanstalt für Land- und Forstwirtschaft, Berlin-Dahlem, vol. 299
Synergus apicalis Hartig 1841
Creators: name: Tataroğlu, Musa
name: Katilmiş, Yusuf
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Cynipidae
Synergus
Synergus apicalis

description: Synergus apicalis Hartig, 1841
—Distribution in the Eastern Black Sea Region: Giresun, GümüŞhane and Ordu (Figure 13)
—Host galls in the Eastern Black Sea Region: A. infectorius, A. quercusramuli and Ap. cerricola.
description: Published as part of Tataroğlu, Musa & Katilmiş, Yusuf, 2024, Gall wasp (Cynipoidea: Cynipidae and Diplolepididae) fauna of the Eastern Black Sea Region (Türkiye), pp. 112-144 in Zootaxa 5468 (1) on page 131, DOI: 10.11646/zootaxa.5468.1.4, http://zenodo.org/record/11614837
Etiopathogenetic Mechanisms in Diverticular Disease of the Colon
Creators: name: Peery, A.F
name: Camilleri, M
name: Sandler, R.S
Publisher: name: Elsevier Inc
Year: 2020

description: This article reviews epidemiological evidence of heritability and putative mechanisms in diverticular disease, with greatest attention to 3 recent studies of genetic associations with diverticular disease based on genome-wide or whole-genome sequencing studies in large patient cohorts. We provide an analysis of the biological plausibility of the significant associations with gene variants reported and highlight the relevance of ANO1, CPI-17 (aka PPP1R14A), COLQ6, COL6A1, CALCB or CALCA, COL6A1, ARHGAP15, and S100A10 to colonic neuromuscular function and tissue properties that may result in altered compliance and predispose to the development of diverticular disease. Such studies also identify candidate genes for future studies.
Synergus consobrinus Giraud 1911
Creators: name: Tataroğlu, Musa
name: Katilmiş, Yusuf
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Cynipidae
Synergus
Synergus consobrinus

description: * Synergus consobrinus Giraud in Houard, 1911
—Distribution in the Eastern Black Sea Region: Bayburt, Giresun, GümüŞhane and Rize (Figure 13)
—Host galls in the Eastern Black Sea Region: A. caputmedusae, A. quercustozae and C. fatihi.
description: Published as part of Tataroğlu, Musa & Katilmiş, Yusuf, 2024, Gall wasp (Cynipoidea: Cynipidae and Diplolepididae) fauna of the Eastern Black Sea Region (Türkiye), pp. 112-144 in Zootaxa 5468 (1) on page 131, DOI: 10.11646/zootaxa.5468.1.4, http://zenodo.org/record/11614837
Additional file 4: Figure S3. of Isolation of ripening-related genes from ethylene/1-MCP treated papaya through RNA-seq
Creators: name: Shen, Yan
name: Lu, Bing
name: Feng, Li
name: Yang, Fei
name: Geng, Jiao
name: Ming, Ray
name: Chen, Xiao
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: 60506 Virology
subject: Computational Biology

description: KEGG graph of porphyrin and chlorophyll metabolism pathway (CG-vs-ETH). 1.16.3.1 indicates ferretin 1 (evm.TU.supercontig_5.220); 2.5.1.61 indicates hydroxymethylbilane synthase (evm.TU.supercontig_43.43); 1.3.3.4 indicates protoporphyrinogen oxidase (evm.TU.supercontig_130.4); 6.6.1.1 indicates magnesium-chelatase subunit ChlI (evm.TU.supercontig_7.16) and magnesium-chelatase subunit chlH (evm.TU.supercontig_92.51); 2.1.1.11 indicates magnesium-protoporphyrin IX methyltransferase (evm.TU.supercontig_13.164); 1.3.1.33 indicates protochlorophyllide oxidoreductase A (evm.TU.supercontig_80.29); 1.1.1294 indicates NAD (P)-binding rossmann-fold superfamily protein (evm.TU.supercontig_23.100); 3.1.1.14 indicates chlorophyllase 2 (evm.TU.supercontig_44.117); 1.14.1220 indicates pheophorbide a oxygenase, chloroplastic-like (evm.TU.supercontig_47.4). (DOCX 85Â kb)
Digitalizing Railway Operations: An Optimization-Based Train Rescheduling Model for Urban and Interurban Disrupted Networks
Creators: name: Bafandkar, Shayan
name: Shafahi, Yousef
name: Eslami, Alireza
name: Yazdiani, Alireza
Publisher: name: arXiv
Year: 2024
Subjects: subject: Optimization and Control (math.OC)
subject: FOS: Mathematics

description: This study introduces a novel methodology for managing train network disruptions across the entire rail network, leveraging digital tools and methodologies. The approach involves two stages, taking into account possible and practical features such as allowing trains to occupy opposite tracks and considering infrastructure capacity for train stops. In the first stage, important nodes within the train network are identified, considering both a topological feature and passenger demand. Subsequently, the network is aggregated based on these important nodes, employing a digital approach to reduce problem complexity. In the second stage, we develop an Integer Programming model for train rescheduling. We then solve this model using the CPLEX solver to evaluate its efficiency. The first case study applies this methodology to the Iranian railway, which is known as a sparse rail network. The results show minimal deviation from the initial train timetable due to the low frequency of trips in each block. Although the approach successfully addresses the train rescheduling problem for various disruption scenarios on the Iranian railway, the excessive computational time required by the optimization model prompts us to make adjustments. Finally, the second case study demonstrates the implementation of the adjusted model in a busy test network. This adaptation significantly reduces computational time by up to 88%. It can be effectively utilized for disruption management in busy networks, where trains need to receive a secondary timetable promptly when facing disruptions.
title: 49. Deutsche Pflanzenschutztagung: in Heidelberg, 26. - 29. September 1994
Creators: name: Deutsche Pflanzenschutz-Tagung 49 1994 Heidelberg
Publisher: name: Blackwell-Wiss.-Verl.
Year: 1994
Subjects: subject: Pflanzenschutz
subject: 630

description: Mitteilungen aus der Biologischen Bundesanstalt für Land- und Forstwirtschaft, Berlin-Dahlem, vol. 301