cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Constraints from CMB on Spacetime Noncommutativity and Causality Violation
Creators: name: Akofor, Earnest
name: Balachandran, A. P.
name: Joseph, Anosh
name: Pekowsky, Larne
name: Qureshi, Babar A.
Publisher: name: arXiv
Year: 2008
Subjects: subject: Astrophysics (astro-ph)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We try to constrain the noncommutativity length scale of the theoretical model given in Ref. [1] using the observational data from ACBAR, CBI and five year WMAP. The noncommutativity parameter is not constrained by WMAP data, however ACBAR and CBI data restrict the lower bound of its energy scale to be around 10 TeV. We also derive an expression for the amount of non-causality coming from spacetime noncommutativity for the fields of primordial scalar perturbations that are space-like separated. The amount of causality violation for these field fluctuations are direction dependent.
description: 15 pages, 6 figures
Additional file 1 of Title: insoluble proteins catch heterologous soluble proteins into inclusion bodies by intermolecular interaction of aggregating peptides
Creators: name: Carratalá, Jose Vicente
name: Cisneros, Andrés
name: Hellman, Elijah
name: Villaverde, Antonio
name: Ferrer-Miralles, Neus
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Figure S1. Extended confocal microscopy visualization of E. coli ClearColi cells producing the recombinant fluorescent proteins. a Visual field of cells producing L6K2-containing constructs and VP1GFPH6 (aggregation control) analyzed in Fig. 2. b Visual fields of cells producing simultaneously GFP and EBFP2 constructs analyzed in Fig 5. Scale bar indicates 4 μm.
Additional file 4 of Title: insoluble proteins catch heterologous soluble proteins into inclusion bodies by intermolecular interaction of aggregating peptides
Creators: name: Carratalá, Jose Vicente
name: Cisneros, Andrés
name: Hellman, Elijah
name: Villaverde, Antonio
name: Ferrer-Miralles, Neus
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 4: Figure S4. DNA sequence of recombinant gene VP1EBFP2H6 used in the study. Translate tool from Expasy was used to obtain corresponding amino acid sequence. Clustalw was run to align amino acid sequence of GFP and EBFP2. Swiss Model was used to display 3D structure of EBFP2 protein.
title: Frontmatter, Table of Contents, Preface, Conference Organization
Creators: name: Matthes, Ralph
name: Schubert, Aleksy
Publisher: name: Schloss Dagstuhl – Leibniz-Zentrum für Informatik
Year: 2014
Subjects: subject: Frontmatter
subject: Table of Contents
subject: Preface
subject: Conference Organization

description: Frontmatter, Table of Contents, Preface, Conference Organization
description: LIPIcs, Vol. 26, 19th International Conference on Types for Proofs and Programs (TYPES 2013), pages i-x
Additional file 5 of Title: insoluble proteins catch heterologous soluble proteins into inclusion bodies by intermolecular interaction of aggregating peptides
Creators: name: Carratalá, Jose Vicente
name: Cisneros, Andrés
name: Hellman, Elijah
name: Villaverde, Antonio
name: Ferrer-Miralles, Neus
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 5: Figure S5. Relative solubility (%) of recombinant proteins. Detection of H6GFPL6K2, VP1GFPH6 and VP1EBFP2H6 in the soluble and insoluble cell fractions of ClearColi analyzed by Western Blotting. Equivalent number of transformed ClearColi cells were lysed and soluble and insoluble cells fractions were separated. All proteins were detected with anti-his antibody. Data are presented as mean ± STD of biological triplicate measurements.
ОЛИНАДИГАН ТИШ ПРОТЕЗЛАРИ МАВЖУД БЕМОРЛАРДА АДЕНТИЯНИНГ ТАРҚАЛГАНЛИГИ ВА УНИНГ РИВОЖЛАНИШ ОМИЛЛАРИ
Creators: name: Тухтаева, Махсуда
Publisher: name: Zenodo
Year: 2025

description: Тишлар тўлиқ йўқотилганида чайнаш функцияси умуман йўқолади. Овқатни фақат милк ва тил билан ишқалаш орқали қабул қилиш мумкин. Фақат юмшоқ консистенцияли майдаланган озиқ-овқатларни қабул қилиш имконли бўлади. Сўлак безлари йўлларининг диаметри кексаликда кичраяди. Тишлар тўлиқ йўқотилганида, шунингдек, сўлак безлари секретининг таркиби ўзгаради. Бунинг натижасида сўлак миқдори камаяди, овқат бўлаклари сўлак билан кам намланади ва бу овқат ҳазм қилинишининг бузилишига, бунинг оқибатида эса ошқозон-ичак тракти касалликларига олиб келади
Additional file 3 of Title: insoluble proteins catch heterologous soluble proteins into inclusion bodies by intermolecular interaction of aggregating peptides
Creators: name: Carratalá, Jose Vicente
name: Cisneros, Andrés
name: Hellman, Elijah
name: Villaverde, Antonio
name: Ferrer-Miralles, Neus
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3: Figure S3. DNA sequences of recombinant genes H6iRFPL6K2 and H6GFPL6K2 used in the study. Translate tool from Expasy was used to obtain corresponding amino acid sequences. Clustalw was run to align amino acid sequences and Swiss Model to display 3D structures of the recombinant proteins.
Additional file 1 of Implementation outcomes of Humanwide: integrated precision health in team-based family practice primary care
Creators: name: Brown-Johnson, Cati G.
name: Safaeinili, Nadia
name: Baratta, Juliana
name: Palaniappan, Latha
name: Mahoney, Megan
name: Rosas, Lisa G.
name: Winget, Marcy
Publisher: name: figshare
Year: 2021
Subjects: subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 1. Precision Health Provider Interview Protocol.
Additional file 2 of Implementation outcomes of Humanwide: integrated precision health in team-based family practice primary care
Creators: name: Brown-Johnson, Cati G.
name: Safaeinili, Nadia
name: Baratta, Juliana
name: Palaniappan, Latha
name: Mahoney, Megan
name: Rosas, Lisa G.
name: Winget, Marcy
Publisher: name: figshare
Year: 2021
Subjects: subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 2. Precision Health Patient Interview Protocol.
Additional file 1: of Prison health situation and health rights of young people incarcerated in sub-Saharan African prisons and detention centres: a scoping review of extant literature
Creators: name: Marie-Claire Van Hout
name: Mhlanga-Gunda, Rosemary
Publisher: name: Figshare
Year: 2019
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Computational Biology

description: Supplemental Table. (DOCX 120 kb)
Additional file 1: of Remote ischemic conditioning in septic shock (RECO-Sepsis): study protocol for a randomized controlled trial
Creators: name: Cour, Martin
name: Buisson, Marielle
name: Kada Klouche
name: Radhia Bouzgarrou
name: Schwebel, Carole
name: Quenot, Jean-Pierre
name: Zeni, Fabrice
name: Beuret, Pascal
name: Ovize, Michel
name: Argaud, Laurent
Publisher: name: Figshare
Year: 2019
Subjects: Medicine
Science Policy

description: Standard Protocol Items: Recommendations for Interventional Trials (SPIRIT) 2013 Checklist: recommended items to address in a clinical trial protocol and related documents. (DOC 124 kb)
Additional file 3: of Leptin produced by obesity-altered adipose stem cells promotes metastasis but not tumorigenesis of triple-negative breast cancer in orthotopic xenograft and patient-derived xenograft models
Creators: name: Sabol, Rachel
name: Bowles, Annie
name: Côté, Alex
name: Wise, Rachel
name: Benjamen O’Donnell
name: Matossian, Margarite
name: Fokhrul Hossain
name: Burks, Hope
name: Valle, Luis
name: Miele, Lucio
name: Collins-Burow, Bridgette
name: Burow, Matthew
name: Bunnell, Bruce
Publisher: name: Figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: Figure S3. Patient-derived xenograft. (A) Primary human TNBC was surgically removed and implanted with Matrigel into SCID/Beige female mice (n = 5 per group). SCID/Beige mice lack B cells, T cells, and functional natural killer cells. At passage seven, tumors pieces were implanted with lnASCs, obASCs, or PDX alone. (B) Analysis of immunostaining of tumors at end point revealed that ASCs had no effect on proliferation (ki67+ cells) or angiogenesis (CD31+ blood vessels). All images in panel acquired at the same magnification. Scale bar represents 200 μm. (C) Histologic analysis CD44+ is shown. Scale bar in upper row represents 60 μm and 20 μm in the lower panel. (D) Histologic analysis CD44+, CD36+, and CPT1 is shown. All images were acquired at the same magnification. Scale bar represents 10 μm. Values reported are the mean (n = 5 mice/group). Bars, ± SEM. *p
Additional file 1 of Impact of short-read sequencing on the misassembly of a plant genome
Creators: name: Peipei Wang
name: Fanrui Meng
name: Moore, Bethany M.
name: Shiu, Shin-Han
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Figure S1. Properties of HC/LC/BG regions with high confidence. a Proportion of Ns in HC/LC/BG regions. b Length distribution of HC/LC/BG regions. c Length distribution of overlapped regions between HC/LC/BG and M2/M3 regions.
Probing small-scale baryon and dark matter isocurvature perturbations with cosmic microwave background anisotropies
Creators: name: Lee, Nanoom
name: Ali-Haïmoud, Yacine
Publisher: name: arXiv
Year: 2021
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: The Universe's initial conditions, in particular baryon and cold dark matter (CDM) isocurvature perturbations, are poorly constrained on sub-Mpc scales. In this paper, we develop a new formalism to compute the effect of small-scale baryon perturbations on the mean free-electron abundance, thus on cosmic microwave background (CMB) anisotropies. Our framework can accommodate perturbations with arbitrary time and scale dependence. We apply this formalism to four different combinations of baryon and CDM isocurvature modes, and use Planck CMB-anisotropy data to probe their initial amplitude. We find that Planck data is consistent with no small-scale isocurvature perturbations, and that this additional ingredient does not help alleviate the Hubble tension. We set upper bounds to the dimensionless initial power spectrum $Δ_{\mathcal{I}}^2(k)$ of these isocurvature modes at comoving wavenumbers $1~\textrm{Mpc}^{-1} \le k \le 10^3$ Mpc$^{-1}$, for several parameterizations. For a scale-invariant power spectrum, our 95% confidence-level limits on $Δ_{\mathcal{I}}^2$ are 0.023 for pure baryon isocurvature, 0.099 for pure CDM isocurvature, 0.026 for compensated baryon-CDM perturbations, and 0.009 for joint baryon-CDM isocurvature perturbations. Using a Fisher analysis generalized to non-analytic parameter dependence, we forecast that a CMB Stage-4 experiment would be able to probe small-scale isocurvature perturbations with initial power 3 to 10 times smaller than Planck limits. The formalism introduced in this work is very general and can be used more widely to probe any physical processes or initial conditions sourcing small-scale baryon perturbations.
description: 17 pages, 7 figures. Results are available at https://github.com/nanoomlee/small-scale_baryon_CDM_isocurvature_results
The Standard Model of particle physics as a conspiracy theory and the possible role of the Higgs boson in the evolution of the early universe
Creators: name: Jegerlehner, Fred
Publisher: name: arXiv
Year: 2021
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: I am considering Veltman's "The Infrared - Ultraviolet Connection" addressing the issue of quadratic divergences and the related huge radiative correction predicted by the electroweak Standard Model (SM) in the relationship between the bare and the renormalized theory, commonly called "the hierarchy problem" which usually is claimed that this has to be cured. After the discovery of the Higgs particle at CERN, which essentially completed the SM, an amazing interrelation of the leading interaction strengths of the gauge bosons, the top-quark and the Higgs boson showed up amounting that the SM allows for a perturbative extrapolation of the running couplings up to the Planck scale. The central question concerns the stability of the electroweak vacuum, which requires that the running Higgs self-coupling stays positive. Although several evaluations seem to favor the meta-stability within the experimental and theoretical parameter-uncertainties, one should not exclude the possibility that other experiments and improved matching conditions will be able to establish the absolute stability of the SM vacuum in the future. I will discuss the stable vacuum scenario and its impact on early cosmology, revealing the Higgs boson as the inflaton. It turns out that the Standard Model's presumed "hierarchy problem" and similarly the "cosmological constant problem" resolve themselves when we understand the SM as a low energy effective tail that is emergent from a cutoff-medium at the Planck scale. "The Infrared - Ultraviolet Connection" conveyed by the Higgs boson mass renormalization appears in a new light when the energy dependence of the SM couplings is taken into account. The bare Higgs boson mass square then changes sign below the Planck scale where it is activating the Higgs mechanism.
description: 29 pages, 7 figures, to appear in Acta Physica Polonica B. Invited talk at the Workshop "Naturalness, Hierarchy and Fine Tuning" RWTH Aachen, 28 February 2018 to 2 March 2018, Aachen,German
Determination of characteristic muon precession and relaxation signals in FeAs and FeAs2, possible impurity phases in pnictide superconductors
Creators: name: Baker, P. J.
name: Lewtas, H. J.
name: Blundell, S. J.
name: Lancaster, T.
name: Pratt, F. L.
name: Parker, D. R.
name: Pitcher, M. J.
name: Clarke, S. J.
Publisher: name: arXiv
Year: 2008
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We report muon-spin relaxation measurements of highly homogeneous samples of FeAs and FeAs2, both previously found as impurity phases in some samples of recently synthesized pnictide superconductors. We observe well defined muon precession in the FeAs sample with two precession frequencies of 38.2(3) and 22.7(9) MHz at 7.5 K, with the majority of the amplitude corresponding to the lower frequency component. In FeAs2 we confirm previous measurements showing that no long-ranged magnetic order occurs above 2 K and measure the muon spin relaxation rate, which increases on cooling. Our results exclude the possibility that previous muon-spin relaxation measurements of pnictide superconductors have been measuring the effect of these possible impurities.
description: 4 pages, 3 figures, corrected Figure 3
Automatic speech quality analysis with application to speech training
Creators: name: Exner, Rolf
Publisher: name: University of British Columbia
Year: 2010

description: A number of aspects of speech training involve assessing the quality of the student's speech. It is of interest to determine whether such speech quality analysis can be done automatically. This thesis provides a preliminary answer to that question by proposing and then evaluating a set of quality measures for comparing the quality of two segments of speech. Speech quality is taken to be the lack of defects in the articulatory and prosodic components of speech. It is a non-quantitative definition from speech pathology that can meet the needs of speech training. Speech defects common among deaf children and students of English as a second language are reviewed, and classified according to this scheme. The speech quality measures are based on a linear prediction model of speech, and adapt several techniques from the field of speech recognition. Evaluations using speech with known quality defects show that the articulatory measures are effective in detecting most of the common errors of articulation, with the exception of ones between nasal sounds. The prosodic quality measures of loudness and timing give very useful indications of syllable stress and voicing errors. The timing measure is derived from the optimal time-warping curve between the two utterances, and provides an accurate means of tracking speed variations in speech. Differences between speakers tend to mask articulatory quality errors, but have little effect on the prosodic quality measures. An articulatory distance measure is proposed that partly counters these interspeaker differences. Work remains to be done in a number of key areas, but the results of this preliminary investigation suggest that automatic speech quality analysis by computer is practical and may one day become a versatile tool for speech training.
Additional file 1: of Complement 3+-astrocytes are highly abundant in prion diseases, but their abolishment led to an accelerated disease course and early dysregulation of microglia
Creators: name: Hartmann, Kristin
name: Sepulveda-Falla, Diego
name: Indigo Rose
name: Madore, Charlotte
name: Muth, Christiane
name: Matschke, Jakob
name: Butovsky, Oleg
name: Liddelow, Shane
name: Glatzel, Markus
name: Krasemann, Susanne
Publisher: name: Figshare
Year: 2019
Subjects: Molecular Biology
Neuroscience
Cancer

description: 'Complement 3+-astrocytes are highly abundant in prion diseases, but their abolishment led to an accelerated disease course and early dysregulation of microglia' Supplementary Figures and Table. (DOCX 15895 kb)
The diffuse neutrino flux from the inner Galaxy: constraints from very high energy gamma-ray observations
Creators: name: Gabici, S.
name: Taylor, A. M.
name: White, R. J.
name: Casanova, S.
name: Aharonian, F. A.
Publisher: name: arXiv
Year: 2008
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Recently, the MILAGRO collaboration reported on the detection of a diffuse multi-TeV emission from a region of the Galactic disk close to the inner Galaxy. The emission is in excess of what is predicted by conventional models for cosmic ray propagation, which are tuned to reproduce the spectrum of cosmic rays observed locally. By assuming that the excess detected by MILAGRO is of hadronic origin and that it is representative for the whole inner Galactic region, we estimate the expected diffuse flux of neutrinos from a region of the Galactic disk with coordinates $-40^{\circ} < l < 40^{\circ}$. Our estimate has to be considered as the maximal expected neutrino flux compatible with all the available gamma ray data, since any leptonic contribution to the observed gamma-ray emission would lower the neutrino flux. The diffuse flux of neutrinos, if close to the maximum allowed level, may be detected by a km$^3$--scale detector located in the northern hemisphere. A detection would unambiguously reveal the hadronic origin of the diffuse gamma-ray emission.
description: submitted to Astroparticle Physics
Additional file 2 of Impact of short-read sequencing on the misassembly of a plant genome
Creators: name: Peipei Wang
name: Fanrui Meng
name: Moore, Bethany M.
name: Shiu, Shin-Han
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2: Figure S2. Genomic feature distributions in flanking regions of HC/LC/BG regions of different length (0.5 ~ 32Kb). Violin plots showing distributions of GC content, and densities of genes, tandemly duplicated genes, pseudogenes, transposable element and SSRs in HC, BG, and LC regions. Red line indicates median value.
DATASET: First record of an entomopathogenic fungus of tomato leafminer, Tuta absoluta (Meyrick) in Tanzania
Creators: name: Zekeya, Never
name: Mtambo, Madundo
name: Srinivasan, Ramasamy
name: Chacha, Musa
name: Ndakidemi, Patrick A.
name: Mbega, Ernest R.
Publisher: name: Unknown
Year: 0
Subjects: LEAF MINERS
TOMATOES
BIOLOGICAL CONTROL

description: Tuta absoluta (Meyrick) is a destructive pest causing adverse environmental and economic effects globally. Management of T. absoluta by synthetic chemicals is of diminutive achievement due to resistance trick of the pest. Harnessing of biocontrols is currently fascinating and efficient for management of the tremendous pests. This study isolated an entomopathogenic fungus from dead larvae of T. absoluta on tomato leaves from farmer’s field Tanzania. Two Aspergillus fungal isolates were isolated and tested against larvae and adults of T. absoluta under conditions of 19.5°C and 50%RH, 30.4°C and 70% RH, respectively, in the laboratory. Sequence analysis of Aspergillus isolates that we referred as A-Tz1 and A-Tz2 were analysed with the BLAST program available at the National Center for Biological Information (NCBI). The two isolates (A-Tz1 and A-Tz2) showed 100% similarity with Aspergillus oryzae of GeneBank accession numbers EF121337.1 and MG519722.1. Such similarity implied that both A-Tz1 and A-Tz2 isolates were A. oryzae. To confirm pathogenicity, bioassays were conducted against the larvae, pupa and adults of T. absoluta. Results showed that at 1.0 × 108 conidia/mL, fungal isolates caused up to 70% larval mortality 3 days post inoculation and consequently inhibited pupation by 84.5% and adult emergence by 74.4%. The identified A. oryzae reduced the life span of adult T. absoluta up to 5 days post inoculation at 1.0 × 108 conidia/mL whereas in control T. absoluta survived up to 25 days. This study found that isolates of Aspegillus species have the potential to be used as active ingrediennt for the formulation of a new bioinjections for application by farmers to control the pest in fields.
Lattice approach to high-energy hadron-hadron scattering
Creators: name: Giordano, M.
name: Meggiolaro, E.
Publisher: name: arXiv
Year: 2008
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We discuss the non perturbative approach to the problem of high-energy hadron-hadron (dipole-dipole) scattering at low momentum transfer by means of numerical simulations in Lattice Gauge Theory.
description: 4 pages, 5 figures, LaTeX with espcrc2.sty (v. 2.7). To appear in the proceedings of the 14th International QCD Conference (QCD 08), Montpellier, France, 7-12 July 2008
Additional file 3 of Impact of short-read sequencing on the misassembly of a plant genome
Creators: name: Peipei Wang
name: Fanrui Meng
name: Moore, Bethany M.
name: Shiu, Shin-Han
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3: Figure S3. RD distribution of 100 bp BG bins overlapped with aligned region categories. For each plot, left Y-axis: number of BG bins in correctly assembled category (C1, C2 or C3); right Y-axis: number of BG bins in mis-assembled category (M1, M2 or M3). The categories are defined in Fig. 5a.
title: Front Matter, Table of Contents, Preface, Conference Organization
Creators: name: Flammia, Steven T.
name: Harrow, Aram W.
Publisher: name: Schloss Dagstuhl – Leibniz-Zentrum für Informatik
Year: 2014
Subjects: subject: Front Matter
subject: Table of Contents
subject: Preface
subject: Conference Organization

description: Front Matter, Table of Contents, Preface, Conference Organization
description: LIPIcs, Vol. 27, 9th Conference on the Theory of Quantum Computation, Communication and Cryptography (TQC 2014), pages i-xiv
Random walks interacting with evolving energy landscapes
Creators: name: Agliari, E.
name: Burioni, R.
name: Cassi, D.
name: Vezzani, A.
Publisher: name: arXiv
Year: 2008
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We introduce a diffusion model for energetically inhomogeneous systems. A random walker moves on a spin-S Ising configuration, which generates the energy landscape on the lattice through the nearest-neighbors interaction. The underlying energetic environment is also made dynamic by properly coupling the walker with the spin lattice. In fact, while the walker hops across nearest-neighbor sites, it can flip the pertaining spins, realizing a diffusive dynamics for the Ising system. As a result, the walk is biased towards high energy regions, namely the boundaries between clusters. Besides, the coupling introduced involves, with respect the ordinary diffusion laws, interesting corrections depending on either the temperature and the spin magnitude. In particular, they provide a further signature of the phase-transition occurring on the magnetic lattice.
Quadratic magnetoelectric effect during field cooling in sputter grown Cr$_2$O$_3$ films
Creators: name: Al-Mahdawi, Muftah
name: Nozaki, Tomohiro
name: Oogane, Mikihiko
name: Imamura, Hiroshi
name: Ando, Yasuo
name: Sahashi, Masashi
Publisher: name: arXiv
Year: 2021
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Cr$_2$O$_3$ is the archetypal magnetoelectric (ME) material, which has a linear coupling between electric and magnetic polarizations. Quadratic ME effects are forbidden for the magnetic point group of Cr$_2$O$_3$, due to space-time inversion symmetry. In Cr$_2$O$_3$ films grown by sputtering, we find a signature of a quadratic ME effect that is not found in bulk single crystals. We use Raman spectroscopy and magetization measurements to deduce the removal of space-time symmetry, and corroborate the emergence of the quadratic ME effect. We propose that meta-stable site-selective trace dopants remove the space, time, and space-time inversion symmetries from the original magnetic point group of bulk Cr$_2$O$_3$. We include the quadratic ME effect in a model describing the switching process during ME field cooling, and estimate the effective quadratic susceptibility value. The quadratic magnetoelectric effect in a uniaxial antiferromagnet is promising for multifunctional antiferromagnetic and magnetoelectric devices that can incorporate optical, strain-induced, and multiferroic effects.
title: Effect of Nutrient and Temperature Conditions on the Production of Microcystins From Cyanobacteria in Pineview Reservoir
Creators: name: Jacobson, Brent G.
Publisher: name: Utah State University
Year: 2024

description: Cyanobacteria, sometimes known as harmful algae, are an aquatic bacteria capable of producing toxic compounds. Cyanobacteria are found worldwide in both saltwater and freshwater environments. Depending on the environment, toxic cyanobacteria species can outcompete other aquatic species, grow in large numbers, and produce these toxic compounds. Further understanding of what environmental conditions promote the production of these harmful bacteria and toxins is needed to protect and inform the public.
In order to understand why cyanobacteria produce toxins in certain environments, samples containing cyanobacteria were taken from a Pineview Reservoir, Utah, and cultured at the Utah State Water Research Laboratory. Cyanobacteria from these cultures were subjected to different nutrient concentrations (phosphorus and nitrogen) and water temperature (25ºC and 16ºC) conditions to test whether these conditions resulted in an increase in toxin production.
Results from the experiments show that lowering water temperature, a low dissolved phosphorus concentration, and the dissolved N:P ratio did not increase the production of toxins during the experiments. Even though no increase in toxin production was seen in the environmental factors tested, it was seen that as total phosphorus concentrations increased so did microcystin concentration. It was also seen that as the total N:P ratio decreased an increase in toxin production was seen.
A cerebellum-like learning machine
Creators: name: Klett, Robert Duncan
Publisher: name: University of British Columbia
Year: 2010

description: This thesis derives a new learning system which is presented as both an improved cerebellar model and as a general purpose learning machine. It is based on a summary of recent publications concerning the operating characteristics and structure of the mammalian cerebellum and on standard interpolating and surface fitting techniques for functions of one and several variables. The system approximates functions as weighted sums of continuous basis functions. Learning, which takes place in an iterative manner, is accomplished by presenting the system with arbitrary training points (function input variables) and associated function values. The system is shown to be capable of minimizing the estimation error in the mean-square-error sense. The system is also shown to minimize the expectation of the interference, which results from learning at a single point, on all other points in the input space. In this sense, the system maximizes the rate at which arbitrary functions are learned.
Additional file 4 of Impact of short-read sequencing on the misassembly of a plant genome
Creators: name: Peipei Wang
name: Fanrui Meng
name: Moore, Bethany M.
name: Shiu, Shin-Han
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 4: Figure S4. Example mis-assembled HC regions. a Normalized RD in a region containing an SM gene cluster on Chromosome 8. Normalized RD was calculated for each 100 bp bin. Two black brackets indicate identified HC regions, with RD around 2. Valley regions with RD = 0 indicate gaps in genome assembly filled up with Ns. b Syntenic alignments (colored regions between black lines) and gene annotation (colored boxes) of the same region in (a) between short-read and long-read assemblies of Heinz and the PCR-validated sequence in M82. Corresponding positions in (a) and (b) were delineated with grey dashed lines. Colored regions: BLASTn matches between Heinz and M82, with E-value <1e-20 and alignment length > 50 bp. AOX: alcohol oxidase; TPS: terpene synthases; P450: cytochrome P450; CPT: cis-prenyl transferase; ψ: pseudogene. c Dotplot of the region in (a) between Short- and Long-read assemblies. Five cases were indicated using arrow heads, and all these five short regions were identified to be in BG regions in long-read based assembly (➔ BG).
An electronic airborne display system
Creators: name: Stewart, Ian
Publisher: name: University of British Columbia
Year: 2010

description: An electronic airborne display system (EADS) was designed and tested. The EADS designed proved to have several advantages over current analog type cockpit displays. These are: i) reduced cockpit congestion, ii) decreased pilot reaction time, iii) increased flexibility in cockpit instrumentation, iv) decreased complexity in hardware associated with ground based testing and simulation, and v) reduced overall cost of cockpit instrumentation. A detailed description of the hardware and software design, implementation and testing of this EADS is given.
A new broadening technique of numerically unresolved solar transition region and its effect on the spectroscopic synthesis using coronal approximation
Creators: name: Iijima, Haruhisa
name: Imada, Shinsuke
Publisher: name: arXiv
Year: 2021
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: The transition region is a thin layer of the solar atmosphere that controls the energy loss from the solar corona. Large numbers of grid points are required to resolve this thin transition region fully in numerical modeling. In this study, we propose a new numerical treatment, called LTRAC, which can be easily extended to the multi-dimensional domains. We have tested the proposed method using a one-dimensional hydrodynamic model of a coronal loop in an active region. The LTRAC method enables modeling of the transition region with the numerical grid size of 50--100 km, which is about 1000 times larger than the physically required value. We used the velocity differential emission measure to evaluate the possible effects on the optically thin emission. Lower temperature emissions were better reproduced by the LTRAC method than by previous methods. Doppler shift and non-thermal width of the synthesized line emission agree with those from a high-resolution reference simulation within an error of several km/s above the formation temperature of $10^5$ K.
description: 17 pages, 10 figures, accepted for publication in ApJ
Additional file 2: of Delayed loss of UBE3A reduces the expression of Angelman syndrome-associated phenotypes
Creators: name: Sonzogni, Monica
name: Hakonen, Johanna
name: Kleijn, Mireia Bernabé
name: Silva-Santos, Sara
name: Judson, Matthew
name: Philpot, Benjamin
name: Woerden, Geeske
name: Elgersma, Ype
Publisher: name: Figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Developmental Biology
subject: Cancer

description: Figure S1. Deletion of UBE3A during embryogenesis. A. Whole brain immunohistochemical stainings indicate reduced UBE3A protein levels in Ube3aflox-Creembryo+ mice compared to Ube3aflox-Creembryo– control mice. B. Ube3a gene deletion upon CRE activation driven by the Cag promoter during embryogenesis. C. Western blot data indicate reduced UBE3A protein levels in Ube3aflox-Creembryo+ mice compared to control groups. Number of mice used for the Western blot analysis is n = 3 per genotype. Data shown are mean (±SEM). See Additional file 3 (Table S2) for statistical analysis and the sample sizes. (PDF 85 kb)
title: From media anthropology to anthropomediality
Creators: name: Othold, Tim
name: Voss, Christiane
Publisher: name: Bauhaus-Universität Weimar
Year: 2017
Subjects: subject: Medien
subject: Anthropologie
subject: 300

description: Media anthropology is a new and interdisciplinary field of research with very different subjects and methods that seems to be already heavily informed by a comparatively narrow understanding of media as mass media (e.g. TV, Internet, social web, etc.). Therefore, most theories in this field, at least implicitly, employ a hierarchical and often dichotomic preconception of the two poles of media-human relations, by analysing the operationalities and ontologies of the human and the media independently from one another. This article deviates from this line of thought by advocating an expanded, symmetrical and relational understanding of the terms media and human, taking them as always already intermingled facets of a broader dynamic configuration. Starting from a consideration of the historically powerful, yet overlooked media of the so-called habitat diorama, the heuristic concept of “anthropomediality” is to be developed. Eventually, this relational approach may open up a new, interesting field for interrogation of (media-)anthropological analysis in general.
F-LOAM: Fast LiDAR Odometry And Mapping
Creators: name: Wang, Han
name: Wang, Chen
name: Chen, Chun-Lin
name: Xie, Lihua
Publisher: name: arXiv
Year: 2021
Subjects: subject: Robotics (cs.RO)
subject: FOS: Computer and information sciences

description: Simultaneous Localization and Mapping (SLAM) has wide robotic applications such as autonomous driving and unmanned aerial vehicles. Both computational efficiency and localization accuracy are of great importance towards a good SLAM system. Existing works on LiDAR based SLAM often formulate the problem as two modules: scan-to-scan match and scan-to-map refinement. Both modules are solved by iterative calculation which are computationally expensive. In this paper, we propose a general solution that aims to provide a computationally efficient and accurate framework for LiDAR based SLAM. Specifically, we adopt a non-iterative two-stage distortion compensation method to reduce the computational cost. For each scan input, the edge and planar features are extracted and matched to a local edge map and a local plane map separately, where the local smoothness is also considered for iterative pose optimization. Thorough experiments are performed to evaluate its performance in challenging scenarios, including localization for a warehouse Automated Guided Vehicle (AGV) and a public dataset on autonomous driving. The proposed method achieves a competitive localization accuracy with a processing rate of more than 10 Hz in the public dataset evaluation, which provides a good trade-off between performance and computational cost for practical applications.
On the vertices of the k-addiive core
Creators: name: Grabisch, Michel
name: Miranda, Pedro
Publisher: name: arXiv
Year: 2008
Subjects: subject: Discrete Mathematics (cs.DM)
subject: Computer Science and Game Theory (cs.GT)
subject: FOS: Computer and information sciences

description: The core of a game $v$ on $N$, which is the set of additive games $ϕ$ dominating $v$ such that $ϕ(N)=v(N)$, is a central notion in cooperative game theory, decision making and in combinatorics, where it is related to submodular functions, matroids and the greedy algorithm. In many cases however, the core is empty, and alternative solutions have to be found. We define the $k$-additive core by replacing additive games by $k$-additive games in the definition of the core, where $k$-additive games are those games whose Möbius transform vanishes for subsets of more than $k$ elements. For a sufficiently high value of $k$, the $k$-additive core is nonempty, and is a convex closed polyhedron. Our aim is to establish results similar to the classical results of Shapley and Ichiishi on the core of convex games (corresponds to Edmonds' theorem for the greedy algorithm), which characterize the vertices of the core.
Additional file 5 of Impact of short-read sequencing on the misassembly of a plant genome
Creators: name: Peipei Wang
name: Fanrui Meng
name: Moore, Bethany M.
name: Shiu, Shin-Han
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 5: Figure S5. Important features in model distinguishing HC_M2/M3 and HC_C2/C3. Violin plots show distributions of each features or GC contents within regions or in flanking regions. Lines within violin plots indicate median values.
Triggered ion acoustic waves in the solar wind
Creators: name: Mozer, Forrest S.
name: Vasko, Ivan . Y.
name: Verniero, J. L.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Space Physics (physics.space-ph)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: For more than 12 hours beginning on January 18, 2021, continuous narrowband electrostatic emissions were observed on Parker Solar Probe near 20 solar radii. The observed <1000 Hz frequencies were well below the local ion plasma frequency. Surprisingly, the emissions consisted of electrostatic wave packets with shock-like envelopes, appearing repetitively at a ~1.5 Hz rate. This repetitiveness correlated and was in phase with low frequency electromagnetic fluctuations. The emissions were associated with simultaneously observed ion beams and conditions favorable for ion-acoustic wave excitation, i.e. Te/Ti~5. Based on this information and on their velocity estimates of about 100 km/s, these electrostatic emissions are interpreted as ion-acoustic waves. Their observation demonstrates a new regime of instability and evolution of oblique ion-acoustic waves that have not been reported previously in theory or experiment.
Additional file 7: of Delayed loss of UBE3A reduces the expression of Angelman syndrome-associated phenotypes
Creators: name: Sonzogni, Monica
name: Hakonen, Johanna
name: Kleijn, Mireia Bernabé
name: Silva-Santos, Sara
name: Judson, Matthew
name: Philpot, Benjamin
name: Woerden, Geeske
name: Elgersma, Ype
Publisher: name: Figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer

description: Figure S3. Deletion of UBE3A in young mice. A. Immunohistochemical staining indicate reduced UBE3A protein levels in Ube3aflox-TAM mice compared to Ube3aflox-VEH control group. B. Ube3a gene deletion induced at 3 weeks of age upon CRE activation by tamoxifen injection. C. Western blot data indicate reduced UBE3A protein levels in Ube3aflox-Creembryo+ mice compared to control groups. Number of mice used for the Western blot analysis is n = 3–4 per genotype. Data shown are mean (±SEM). See Additional file 3: Table S2 for statistical analysis and the sample sizes. (PDF 1445 kb)
Survey on the Burnside ring of compact Lie groups
Creators: name: Fausk, Halvard
Publisher: name: arXiv
Year: 2008
Subjects: subject: Group Theory (math.GR)
subject: FOS: Mathematics
subject: 19A22, 22-02

description: The definition and basic properties of the Burnside ring of compact Lie groups are presented, with emphasis on the analogy with the construction of the Burnside ring of finite groups.
description: 15 pages
Additional file 6 of Impact of short-read sequencing on the misassembly of a plant genome
Creators: name: Peipei Wang
name: Fanrui Meng
name: Moore, Bethany M.
name: Shiu, Shin-Han
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 6: Figure S6. Distributions of important features in model distinguishing HC_M2/M3 and BG_M2/M3. Violin plots show distributions of each features or GC contents within regions or in flanking regions. Lines within violin plots indicate median values.
Measurement of the Decay B_s^0 -> D_s^- pi^+ and Evidence for B_s^0 -> D_s^{+/-} K^{-/+} in e+e- Annihilation at sqrt(s)~10.87 GeV
Creators: name: The Belle Collaboration
name: Louvot, R.
name: Wicht, J.
name: Schneider, O.
Publisher: name: arXiv
Year: 2008
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: We have studied Bs0 -> Ds- pi+ and Bs0 -> Ds^(-/+) K^(+/-) decays using 23.6 /fb of data collected at the Upsilon(5S) resonance with the Belle detector at the KEKB e+e- collider. This highly pure Bs0 -> Ds- pi+ sample is used to measure the branching fraction, BR(Bs0 -> Ds- pi+)=[3.67 +0.35,-0.33}(stat.) +0.43,-0.42(syst.) +-0.49(f_s)] x 10^{-3} (f_s=N(Bs(*) Bs(*)bar)/N(b\bar b)) and the fractions of Bs0 event types at the Upsilon(5S) energy, {in particular N(Bs* Bs*bar}/N(N(Bs(*) Bs(*)bar)=(90.1 +3.8,-4.0 +-0.2)%. We also determine the masses M(Bs0)=(5364.4 +-1.3 +-0.7) MeV/c^2 and M(Bs*)=(5416.4 +-0.4 +-0.5) MeV/c^2. In addition, we observe Bs0 -> Ds^(-/+) K^(+/-) decays with a significance of 3.5σand measure BR(Bs0 -> Ds^(-/+) K^(+/-))=[2.4 +1.2,-1.0(stat.) +-0.3(syst.) +-0.3(f_s)] x 10^{-4}.
description: 5 pages, 4 figures, accepted by PRL
The axial charges of proton within an extended chiral constituent quark model
Creators: name: Wang, Jin-Bao
name: Li, Gang
name: An, Chun-Sheng
name: Xie, Ju-Jun
Publisher: name: arXiv
Year: 2021
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We have performed a study of the isovector, octet and singlet axial charges of the proton in an extended chiral constituent quark model, where all the possible $uudq\bar{q}$~($q=u,d,s$) five-quark Fock components in the proton wave function are taken into account. The $^3P_0$ quark-antiquark creation mechanism is assumed to account for the transition coupling between three- and five-quark components in proton, and the corresponding transition coupling strength is fixed by fitting the intrinsic sea flavor asymmetry $\bar{d}-\bar{u}$ data for proton. Accordingly, with all the parameters fixed by empirical values, the probabilities of the intrinsic five-quark Fock components in proton wave function should be $\sim30 - 50\%$, which lead to the numerical results for quark spin $Δu$, $Δd$ and $Δs$, as well the axial charges of proton consistent with the experimental data and predictions by other theoretical approaches.
description: 9 pages, 4 tables
title: Frontmatter, Table of Contents, Preface, Conference Organization
Creators: name: Jansen, Klaus
name: Rolim, José
name: Devanur, Nikhil R.
name: Moore, Cristopher
Publisher: name: Schloss Dagstuhl – Leibniz-Zentrum für Informatik
Year: 2014
Subjects: subject: Frontmatter
subject: Table of Contents
subject: Preface
subject: Conference Organization

description: Frontmatter, Table of Contents, Preface, Conference Organization
description: LIPIcs, Vol. 28, Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2014), pages i-xviii