cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1: of Placenta-specific epimutation at H19-DMR among common pregnancy complications: its frequency and effect on the expression patterns of H19 and IGF2
Creators: name: Yamaguchi, Yuko
name: Tayama, Chiharu
name: Tomikawa, Junko
name: Akaishi, Rina
name: Kamura, Hiromi
name: Matsuoka, Kentaro
name: Wake, Norio
name: Minakami, Hisanori
name: Kato, Kiyoko
name: Yamada, Takahiro
name: Nakabayashi, Kazuhiko
name: Hata, Kenichiro
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Computational Biology

description: Figure S1. Correlation plots for DNA methylation levels of H19-DMR and IGF2-DMRs in the placenta and cord blood samples of case/control set I and in the placenta samples of case/control set II. Figure S2. Methylation levels of 18 imprinted DMRs and LINE1 repetitive elements in the placentas of cases 1â 3 and controls determined by COBRA assays. (PDF 333 kb)
Photoemission view of electron fractionalization in quasi-one dimensional metal Li$_{0.9}$Mo$_6$O$_{17}$
Creators: name: Gweon, G. -H.
name: Denlinger, J. D.
name: Olson, C. G.
name: Höchst, H.
name: Marcus, J.
name: Schlenker, C.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We report Luttinger liquid line shapes better revealed by new angle resolved photoemission data taken with a much improved angle resolution on a quasi-1-dimensional metal Li$_{0.9}$Mo$_6$O$_{17}$. The new data indicate a larger spinon velocity than our previous lower resolution data indicated.
description: submitted to SCES '01
RNNbow: Visualizing Learning via Backpropagation Gradients in Recurrent Neural Networks
Creators: name: Cashman, Dylan
name: Patterson, Genevieve
name: Mosca, Abigail
name: Watts, Nathan
name: Robinson, Shannon
name: Chang, Remco
Publisher: name: arXiv
Year: 2019
Subjects: subject: Machine Learning (cs.LG)
subject: Neural and Evolutionary Computing (cs.NE)
subject: FOS: Computer and information sciences

description: We present RNNbow, an interactive tool for visualizing the gradient flow during backpropagation training in recurrent neural networks. RNNbow is a web application that displays the relative gradient contributions from Recurrent Neural Network (RNN) cells in a neighborhood of an element of a sequence. We describe the calculation of backpropagation through time (BPTT) that keeps track of itemized gradients, or gradient contributions from one element of a sequence to previous elements of a sequence. By visualizing the gradient, as opposed to activations, RNNbow offers insight into how the network is learning. We use it to explore the learning of an RNN that is trained to generate code in the C programming language. We show how it uncovers insights into the vanishing gradient as well as the evolution of training as the RNN works its way through a corpus.
Additional file 2 of Measuring the effectiveness of integrated vector management with targeted outdoor residual spraying and autodissemination devices on the incidence of dengue in urban Malaysia in the iDEM trial (intervention for Dengue Epidemiology in Malaysia): study protocol for a cluster randomized controlled trial
Creators: name: Saadatian-Elahi, Mitra
name: Alexander, Neal
name: Möhlmann, Tim
name: Langlois-Jacques, Carole
name: Suer, Remco
name: Ahmad, Nazni Wasi
name: Mudin, Rose Nani
name: Ariffin, Farah Diana
name: Baur, Frederic
name: Schmitt, Frederic
name: Richardson, Jason H.
name: Rabilloud, Muriel
name: Hamid, Nurulhusna Ab
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 2. Strategy for deployment of Auto-dissemination Devices
Additional file 6 of Elevated HMGB1 promotes the malignant progression and contributes to cisplatin resistance of non-small cell lung cancer
Creators: name: Ma, Ying
name: Feng, Qin
name: Han, Bateer
name: Yu, Rong
name: Jin, Zhiyong
Publisher: name: figshare
Year: 2023
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Supplementary Material 6
Numerical Renormalization Group Study of the Anderson-Holstein Impurity Model
Creators: name: Hewson, A.
name: Meyer, D.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We present numerical renormalization group (NRG) calculations for a single-impurity Anderson model with a linear coupling to a local phonon mode. We calculate dynamical response functions, spectral densities, dynamic charge and spin susceptibilities. Being non-perturbative, the NRG is applicable for all parameter regimes. Our calculations cover both weak and strong electron-phonon coupling for zero and finite electron-electron interaction. We interpret the high- and low-energy features and compare our results to atomic limit calculations and perturbation theory. In certain restricted parameter regimes for strong electron-phonon coupling, a soft phonon mode develops inducing a very narrow resonance at the Fermi level.
description: 23 pages, 13 figures, submitted to J. Phys.:Condens. Matter
Additional file 4: of Simulation-based clinical systems testing for healthcare spaces: from intake through implementation
Creators: name: Colman, Nora
name: Doughty, Cara
name: Arnold, Jennifer
name: Stone, Kimberly
name: Reid, Jennifer
name: Dalpiaz, Ashley
name: Hebbar, Kiran
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Computational Biology

description: Facilitator guide. (DOCX 15 kb)
First-principles calculation of the band offset at BaO/BaTiO$_3$ and SrO/SrTiO$_3$ interfaces
Creators: name: Junquera, Javier
name: Zimmer, Magali
name: Ordejon, Pablo
name: Ghosez, Philippe
Publisher: name: arXiv
Year: 2002
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We report first-principles density-functional pseudopotential calculations on the atomic structures, electronic properties, and band offsets of BaO/BaTiO$_3$ and SrO/SrTiO$_3$ nanosized heterojunctions grown on top of a silicon substrate. The density of states at the junction does not reveal any electronic induced interface states. A dominant perovskite character is found at the interface layer. The tunability of the band offset with the strain conditions imposed by the substrate is studied. Using previously reported theoretical data available for Si/SrO, Si/BaO and BaTiO$_{3}$/SrRuO$_{3}$ interfaces we extrapolate a value for the band alignments along the whole gate stacks of technological interest: Si/SrO/SrTiO$_3$ and Si/BaO/BaTiO$_3$/SrRuO$_3$ heterostructures.
description: 12 pages, 6 figures, submitted to Phys. Rev. B
Comment to Impact of Daylight Saving Time on circadian timing system: An expert statement
Creators: name: Martin-Olalla, Jose Maria
Publisher: name: arXiv
Year: 2019
Subjects: subject: Popular Physics (physics.pop-ph)
subject: FOS: Physical sciences

description: 1000 words comment on a paper published in the European Journal of Internal Medicine by a panel of experts. My point is authors address the magnitude of the change (one hour) but fail to consider in any way its seasonal features. DST is not a random change of an hour but an specific change on specific dates and in a specific direction ---spring forward, fall back---. DST is the way many contemporary societies handles the seasonality. The way many contemporary societies turn a nonseasonal clock (the mechanical clock) into a seasonal clock.
description: 1000 words, 1 figure, revtex two column (2 pages). Published in the European Journal of Internal Medicine
Mesa tylocera Boni 2013, nov.sp.
Creators: name: Boni, M.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Tiphiidae
Mesa
Mesa tylocera

description: Mesa tylocera nov.sp.
 H o l o t y p u s - Kenya = /Coll A. Mochi 6.XII.72 Watamu Malindi Kenya / MSNP.
Holotype. figs 256-262. Body size: 10 mm.
 Black. Yellow: mandible; the whole of clypeus but semitransparent ventral edge and two oval areas; subapical Tsa; subapical stripe and anteroventral corner of  N 1  disk; perimeter of tegula and  LaSt 2 ; tarsi; fore and mid trochamters; most of mid tibia and femur; apex of hind tibia and femur; ventral surface of  X 1  and  X 2 ; two lateral spots on 2 nd Te; narrow apical stripe on 3 rd to 5 th Te. Wings hyaline.
 Tsa not complanar, forming a clear angle in frontal aspect. Flagellum thickening toward apex. Very short, almost undetectable tyloid on 6 th, median half 7 th, as long as element on 8 th to 10 th, on basal half 11 th Pronotum with a distinct lamellar keel along its fore border and tooth on its anteroventral corner. Ventral apex of hind femur simply rounded. 2 nd to 5 th tergal surfaces bipunctate.. 1st metamerus very slender, ratio L /  LApos  of 1 st sternum a bit less than 4, its apical surface with few p. Epipygium with a very shallow median notch, delimited laterally only by a rounded angle.
 Very distinct species by the presence of tyloida on flagellum. It is a very rare condition within the entire subfamily, present in only three other taxa of Mesa.
Derivatio nominis. From the Greek word IJȪȜȘ = callosity, callus and țİȡĮ = horn.
description: Published as part of Boni, M., 2013, Afrotropical taxa of the genus Mesa SAUSSURE 1892 (Hymenoptera, Tiphiidae, Myzininae), pp. 1657-1744 in Linzer biologische Beiträge 45 (2) on page 1699, DOI: 10.5281/zenodo.5303357
Additional file 3: of Simulation-based clinical systems testing for healthcare spaces: from intake through implementation
Creators: name: Colman, Nora
name: Doughty, Cara
name: Arnold, Jennifer
name: Stone, Kimberly
name: Reid, Jennifer
name: Dalpiaz, Ashley
name: Hebbar, Kiran
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Computational Biology

description: Observer tool. (DOCX 14 kb)
Additional file 1 of Measuring the effectiveness of integrated vector management with targeted outdoor residual spraying and autodissemination devices on the incidence of dengue in urban Malaysia in the iDEM trial (intervention for Dengue Epidemiology in Malaysia): study protocol for a cluster randomized controlled trial
Creators: name: Saadatian-Elahi, Mitra
name: Alexander, Neal
name: Möhlmann, Tim
name: Langlois-Jacques, Carole
name: Suer, Remco
name: Ahmad, Nazni Wasi
name: Mudin, Rose Nani
name: Ariffin, Farah Diana
name: Baur, Frederic
name: Schmitt, Frederic
name: Richardson, Jason H.
name: Rabilloud, Muriel
name: Hamid, Nurulhusna Ab
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 1. Flowchart of notification and registration of dengue cases in e-Dengue surveillance system
Dark Energy Survey Year 1 Results: Wide field mass maps via forward fitting in harmonic space
Creators: name: Mawdsley, B.
name: Bacon, D.
name: Chang, C.
name: Melchior, P.
name: Rozo, E.
name: Seitz, S.
name: Jeffrey, N.
name: Gatti, M.
name: Gaztanaga, E.
name: Gruen, D.
name: Hartley, W. G.
name: Hoyle, B.
name: Samuroff, S.
name: Sheldon, E.
name: Troxel, M. A.
name: Zuntz, J.
name: Abbott, T. M. C.
name: Annis, J.
name: Bertin, E.
name: Bridle, S. L.
name: Brooks, D.
name: Buckley-Geer, E.
name: Burke, D. L.
name: Rosell, A. Carnero
name: Kind, M. Car- rasco
name: Carretero, J.
name: da Costa, L. N.
name: De Vicente, J.
name: Desai, S.
name: Diehl, H. T.
name: Doel, P.
name: Evrard, A. E.
name: Flaugher, B.
name: Fosalba, P.
name: Frieman, J.
name: Garcia-Bellido, J.
name: Gerdes, D. W.
name: Gruendl, R. A.
name: Gschwend, J.
name: Gutierrez, G.
name: Hollowood, D. L.
name: Honscheid, K.
name: James, D. J.
name: Jarvis, M.
name: Jeltema, T.
name: Kuehn, K.
name: Kuropatkin, N.
name: Lima, M.
name: Maia, M. A. G.
name: Marshall, J. L.
name: Miquel, R.
name: Plazas, A. A.
name: Roodman, A.
name: Sanchez, E.
name: Scarpine, V.
name: Serrano, S.
name: Sevilla-Noarbe, I.
name: Smith, M.
name: Smith, R. C.
name: Sobreira, F.
name: Suchyta, E.
name: Swanson, M. E. C.
name: Tarle, G.
name: Tucker, D. L.
name: Vikram, V.
name: Walker, A. R.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We present new wide-field weak lensing mass maps for the Year 1 Dark Energy Survey data, generated via a forward fitting approach. This method of producing maps does not impose any prior constraints on the mass distribution to be reconstructed. The technique is found to improve the map reconstruction on the edges of the field compared to the conventional Kaiser-Squires method, which applies a direct inversion on the data; our approach is in good agreement with the previous direct approach in the central regions of the footprint. The mapping technique is assessed and verified with tests on simulations; together with the Kaiser-Squires method, the technique is then applied to data from the Dark Energy Survey Year 1 data and the differences between the two methods are compared. We also produce the first DES measurements of the convergence Minkowski functionals and compare them to those measured in simulations.
description: 19 pages, 16 figures. Submitted to MNRAS
title: On the Changes of Residual Stress States of S550MC + 100Cr6 Cladded Steel Upon Tensile Deformation
Creators: name: Krochmal, Marcel
name: Wegener, Thomas
name: Zeisberg, Johanna
name: Niendorf, Thomas
Publisher: name: KOBRA Universität Kassel
Year: 2025
Subjects: classificationCode: 500
subject: 500
classificationCode: 600
subject: 600
classificationCode: Eigenspannung
subject: Eigenspannung
classificationCode: Stahl
subject: Stahl
classificationCode: Deformation
subject: Deformation

description:
The present study focuses on the evolution of residual stress (RS) and internal damage of a S550MC + 100Cr6 cladded steel after pre-deformation. Deformation-induced internal porosity was hardly found. RS depth profiles point at tensile RS in the 100Cr6 clad layer. These are most pronounced when minor pre-deformation levels are considered. A higher degree of deformation leads to reduced magnitudes of RS. This can be rationalized based on reduced differences in layer strength due to local strain hardening.
Additional file 7 of Highly heterogeneous-related genes of triple-negative breast cancer: potential diagnostic and prognostic biomarkers
Creators: name: Liu, Yiduo
name: Teng, Linxin
name: Fu, Shiyi
name: Wang, Guiyang
name: Li, Zhengjun
name: Ding, Chao
name: Wang, Haodi
name: Bi, Lei
Publisher: name: figshare
Year: 2021
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer

description: Additional file 7: Figure S1. Survival analysis of TNBC subtypes.
ARPES Line Shapes in FL and non-FL Quasi-Low-Dimensional Inorganic Metals
Creators: name: Gweon, G. -H.
name: Denlinger, J. D.
name: Allen, J. W.
name: Claessen, R.
name: Olson, C. G.
name: Hoechst, H.
name: Marcus, J.
name: Schlenker, C.
name: Schneemeyer, L. F.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Quasi-low-dimensional (quasi-low-D) inorganic materials are not only ideally suited for angle resolved photoemission spectroscopy (ARPES) but also they offer a rich ground for studying key concepts for the emerging paradigm of non-Fermi liquid (non-FL) physics. In this article, we discuss the ARPES technique applied to three quasi-low-D inorganic metals: a paradigm Fermi liquid (FL) material TiTe$_{2}$, a well-known quasi-1D charge density wave (CDW) material K$_{0.3}$MoO$_{3}$ and a quasi-1D non-CDW material Li$_{0.9}$Mo$_{6}$O$_{17}$. With TiTe$_2$, we establish that a many body theoretical interpretation of the ARPES line shape is possible. We also address the fundamental question of how to accurately determine the {\bf k}$_F$ value from ARPES. Both K$_{0.3}$MoO$_{3}$ and Li$_{0.9}$Mo$_{6}$O$_{17}$ show quasi-1D electronic structures with non-FL line shapes. A CDW gap opening is observed for K$_{0.3}$MoO$_{3}$, whereas no gap is observed for Li$_{0.9}$Mo$_{6}$O$_{17}$. We show, however, that the standard CDW theory, even with strong fluctuations, is not sufficient to describe the non-FL line shapes of K$_{0.3}$MoO$_{3}$. We argue that a Luttinger liquid (LL) model is relevant for both bronzes, but also point out difficulties encountered in comparing data with theory. We interpret this situation to mean that a more complete and realistic theory is necessary to understand these data.
description: 23 pages, including 21 figures; to appear in a special issue of J. Elec. Spectr. Rel. Phenom
Bound Magnetic Polaron Interactions in Insulating Doped Diluted Magnetic Semiconductors
Creators: name: Durst, Adam C.
name: Bhatt, R. N.
name: Wolff, P. A.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The magnetic behavior of insulating doped diluted magnetic semiconductors (DMS) is characterized by the interaction of large collective spins known as bound magnetic polarons. Experimental measurements of the susceptibility of these materials have suggested that the polaron-polaron interaction is ferromagnetic, in contrast to the antiferromagnetic carrier-carrier interactions that are characteristic of nonmagnetic semiconductors. To explain this behavior, a model has been developed in which polarons interact via both the standard direct carrier-carrier exchange interaction (due to virtual carrier hopping) and an indirect carrier-ion-carrier exchange interaction (due to the interactions of polarons with magnetic ions in an interstitial region). Using a variational procedure, the optimal values of the model parameters were determined as a function of temperature. At temperatures of interest, the parameters describing polaron-polaron interactions were found to be nearly temperature-independent. For reasonable values of these constant parameters, we find that indirect ferromagnetic interactions can dominate the direct antiferromagnetic interactions and cause the polarons to align. This result supports the experimental evidence for ferromagnetism in insulating doped DMS.
description: 11 pages, 7 figures
Study of relativistic magnetized outflows with relativistic equation of state
Creators: name: Singh, Kuldeep
name: Chattopadhyay, Indranil
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: We study relativistic magnetized outflows using relativistic equation of state having variable adiabatic index ($Γ$) and composition parameter $(ξ)$. We study the outflow in special relativistic magneto-hydrodynamic regime, from sub-Alfvénic to super-fast domain. We showed that, after the solution crosses the fast point, magnetic field collimates the flow and may form a collimation-shock due to magnetic field pinching/squeezing. Such fast, collimated outflows may be considered as astrophysical jets. Depending on parameters, the terminal Lorentz factors of an electron-proton outflow can comfortably exceed few tens. We showed that due to the transfer of angular momentum from the field to the matter, the azimuthal velocity of the outflow may flip sign. We also study the effect of composition $(ξ)$ on such magnetized outflows. We showed that relativistic outflows are affected by the location of the Alfvén point, the polar angle at the Alfvén point and also the angle subtended by the field lines with the equatorial plane, but also on the composition of the flow. The pair dominated flow experiences impressive acceleration and is hotter than electron proton flow.
description: 25 pages; 10 figures. Accepted for publication in MNRAS
Phase-locked and phase drift solutions of phase oscillators with asymmetric coupling strengths
Creators: name: Yamada, H.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Pattern Formation and Solitons (nlin.PS)
subject: FOS: Physical sciences

description: Phase-locked solutions of coupled oscillators are studied with asymmetric coupling strengths or inhomogeneous natural frequencies. The solutions show remarkable profiles of phase lags from the pacemaker corresponding to the ratio of upward and downward coupling strengths. By means of the existence condition of phase-locked solutions, the transition points from phase-locked to phase drift states are estimated. The application of the existence condition to the case of the linear gradient of natural frequency illustrates some scaling properties in the frequency diagrams.
description: LaTeX2e, 11 pages, 4 figures (17 EPS files)
Dynamical mean-field theory of a double-exchange model with diagonal disorder
Creators: name: Letfulov, B. M.
name: Freericks, J. K.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We present a simplified model for the colossal magnetoresistance in doped manganites by exactly solving a double-exchange model (with Ising-like local spins) and quenched binary disorder within dynamical mean field theory. We examine the magnetic properties and the electrical and thermal transport. Our solution illustrates three different physical regimes: (i) a weak-disorder regime, where the system acts like a renormalized double-exchange system (which is insufficient to describe the behavior in the manganites); (ii) a strong-disorder regime, where the system is described by strong-coupling physics about an insulating phase (which is the most favorable for large magnetoresistance); and (iii) a transition region of moderate disorder, where both double-exchange and strong-coupling effects are important. We use the thermopower as a stringent test for the applicability of this model to the manganites and find that the model is unable to properly account for the sign change of the thermopower seen in experiment.
description: 14 pages, 10 figures, ReVTeX
Of the Theory of Giant Magnetoresistance (Longitudinal Current)
Creators: name: Kravchenko, V. Ya.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: The paper has been permanently removed due to copyright issues.
description: a single pdf-file
Additional file 1 of Baicalin alleviates chronic obstructive pulmonary disease through regulation of HSP72-mediated JNK pathway
Creators: name: Hao, Dexun
name: Li, Yanshuang
name: Shi, Jiang
name: Jiang, Junguang
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Table S1. Sequence of the primers for RT-qPCR
Milk Powder Extraction: Optimization of Conditions for the Water-Soluble Metabolites by Proton Nuclear Magnetic Resonance (1H-NMR)
Creators: name: Zhu, Dan
name: Hayman, Alan
name: Frew, Russell
name: Kebede, Biniam
name: Chen, Gang
name: Stewart, Ian
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Biochemistry
subject: Physical Sciences not elsewhere classified
subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Hematology
subject: Computational Biology

description: Milk is a favorable for humans due to its nutritional composition. Metabolites in milk relevant to human health have received increased attention. Proton nuclear magnetic resonance (1H-NMR) is commonly used for water-soluble metabolites due to rapid data acquisition and excellent precision. Extraction to separate fats and proteins from the metabolites is necessary to obtain high quality spectra. In the present work, various extraction procedures were compared for 1H-NMR. The mass of milk for extraction was also optimized. Overall, 2/1 (v/v) methanol/skim milk was selected to be the most efficient system. The best precision was obtained for 500 to 600 mg milk powder redissolved in 2 mL water and 0.5 mL skim milk for the subsequent extraction. This study provides a sample preparation protocol for milk metabolomics that may be appropriate for other samples.
Additional file 1: of Model consent clauses for rare disease research
Creators: name: Nguyen, Minh
name: Goldblatt, Jack
name: Isasi, Rosario
name: Jagut, Marlene
name: Anneliene Jonker
name: Kaufmann, Petra
name: Ouillade, Laetitia
name: Fruszina Molnar-Gabor
name: Shabani, Mahsa
name: Sid, Eric
name: TassĂŠ, Anne
name: Durhane Wong-Rieger
name: Bartha Knoppers
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: MCC Report of the Model Consent Clauses Task Force Meeting (Paris, September 6â 7, 2018). (DOCX 138 kb)
Additional file 1: of Predictable chronic mild stress promotes recovery from LPS-induced depression
Creators: name: Dang, Ruili
name: Guo, Yan-yan
name: Zhang, Kun
name: Jiang, Pei
name: Zhao, Ming-gao
Publisher: name: figshare
Year: 2019
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Evolutionary Biology
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Mental Health

description: Figure S1. PCMS alleviates LPS-induced behavioral changes. Sample traces of locomotor activity in the open field test (OFT) of naïve and PCMS mice 4 h and 24 h after saline or LPS (200 μg/kg) treatment (a). Total distance traveled (b), mean velocity (c) of locomotor activity and time spent in the center area (d) in the OFT. Immobile time in the forced swim test 24 h after saline or LPS (e). Time spent in the open arms (f) and entrance to open arms (g) in the elevated plus maze test. (n = 7–9). *p < 0.05, **p < 0.01 compared with the saline-treated naive group. #p < 0.05, ##p < 0.01 compared with the corresponding LPS group. (DOCX 394 kb)
Additional file 1: of Simulation-based clinical systems testing for healthcare spaces: from intake through implementation
Creators: name: Colman, Nora
name: Doughty, Cara
name: Arnold, Jennifer
name: Stone, Kimberly
name: Reid, Jennifer
name: Dalpiaz, Ashley
name: Hebbar, Kiran
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Computational Biology

description: FMEA scoring rubric and reporting template. (PDF 86 kb)
Additional file 1 of Urban green space and happiness in developed countries
Creators: name: Kwon, Oh-Hyun
name: Hong, Inho
name: Yang, Jeasurk
name: Wohn, Donghee Y.
name: Jung, Woo-Sung
name: Cha, Meeyoung
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Cancer

description: Supporting figures and tables for the main manuscript (PDF 679 kB)
A Renormalization Group Method for Quasi One-dimensional Quantum Hamiltonians
Creators: name: Moukouri, S.
name: Caron, L. G.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: A density-matrix renormalization group (DMRG) method for highly anisotropic two-dimensional systems is presented. The method consists in applying the usual DMRG in two steps. In the first step, a pure one dimensional calculation along the longitudinal direction is made in order to generate a low energy Hamiltonian. In the second step, the anisotropic 2D lattice is obtained by coupling in the transverse direction the 1D Hamiltonians. The method is applied to the anisotropic quantum spin half Heisenberg model on a square lattice.
description: 4 pages, 4 figures
Group III Quantum Defects in Diamond are Stable Spin-1 Color Centers
Creators: name: Harris, Isaac
name: Ciccarino, Christopher J.
name: Flick, Johannes
name: Englund, Dirk R.
name: Narang, Prineha
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: Color centers in diamond have emerged as leading solid-state artificial atoms for a range of quantum technologies, from quantum sensing to quantum networks. Concerted research activities are now underway to identify new color centers that combine stable spin and optical properties of the nitrogen vacancy (NV$^-$) with the spectral stability of the silicon vacancy (SiV$^-$) centers in diamond, with recent research identifying other group IV color centers with superior properties. In this Letter, we investigate a new class of diamond quantum emitters from first principles, the group III color centers, which we show to be thermodynamically stable in a spin-1, electric-field insensitive structure. From ab initio electronic structure methods, we characterize the product Jahn-Teller (pJT) effect present in the excited state manifold of these group III color centers, where we capture symmetry-breaking distortions associated with strong electron-phonon coupling. These predictions can guide experimental identification of group III vacancy centers and their use in applications in quantum information science and technology.
description: 6 pages, 3 figures
Additional file 2: of Simulation-based clinical systems testing for healthcare spaces: from intake through implementation
Creators: name: Colman, Nora
name: Doughty, Cara
name: Arnold, Jennifer
name: Stone, Kimberly
name: Reid, Jennifer
name: Dalpiaz, Ashley
name: Hebbar, Kiran
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics

description: Safe design principles. (DOCX 20 kb)
Density-dependent feedback in age-structured populations
Creators: name: Andersson, Jonathan
name: Kozlov, Vladimir
name: Tkachev, Vladimir G.
name: Radosavljevic, Sonja
name: Wennergren, Uno
Publisher: name: arXiv
Year: 2019
Subjects: subject: Dynamical Systems (math.DS)
subject: Biological Physics (physics.bio-ph)
subject: FOS: Mathematics
subject: FOS: Physical sciences

description: The population size has far-reaching effects on the fitness of the population, that, in its turn influences the population extinction or persistence. Understanding the density- and age-dependent factors will facilitate more accurate predictions about the population dynamics and its asymptotic behaviour. In this paper, we develop a rigourous mathematical analysis to study positive and negative effects of increased population density in the classical nonlinear age-structured population model introduced by Gurtin \& MacCamy in the late 1970s. One of our main results expresses the global stability of the system in terms of the newborn function only. We also derive the existence of a threshold population size implying the population extinction, which is well-known in population dynamics as an Allee effect.
description: 20 pages, submitted to J. Math. Sci
Additional file 2 of Assessing public perception of a sand fly biting study on the pathway to a controlled human infection model for cutaneous leishmaniasis
Creators: name: Parkash, Vivak
name: Jones, Georgina
name: Martin, Nina
name: Steigmann, Morgan
name: Greensted, Elizabeth
name: Kaye, Paul
name: Layton, Alison M.
name: Lacey, Charles J.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Neuroscience
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Computational Biology

description: Additional file 2. Guidance for Reporting Involvement of Patients and the Public (GRIPP2) reporting checklist.
Semiclassical quantization with bifurcating orbits
Creators: name: Bartsch, T.
name: Main, J.
name: Wunner, G.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Chaotic Dynamics (nlin.CD)
subject: FOS: Physical sciences

description: Bifurcations of classical orbits introduce divergences into semiclassical spectra which have to be smoothed with the help of uniform approximations. We develop a technique to extract individual energy levels from semiclassical spectra involving uniform approximations. As a prototype example, the method is shown to yield excellent results for photo-absorption spectra for the hydrogen atom in an electric field in a spectral range where the abundance of bifurcations would render the standard closed-orbit formula without uniform approximations useless. Our method immediately applies to semiclassical trace formulae as well as closed-orbit theory and offers a general technique for the semiclassical quantization of arbitrary systems.
The role of bot squads in the political propaganda on Twitter
Creators: name: Caldarelli, Guido
name: De Nicola, Rocco
name: Del Vigna, Fabio
name: Petrocchi, Marinella
name: Saracco, Fabio
Publisher: name: arXiv
Year: 2019
Subjects: subject: Social and Information Networks (cs.SI)
subject: FOS: Computer and information sciences

description: Social Media are nowadays the privileged channel for information spreading and news checking. Unexpectedly for most of the users, automated accounts, also known as social bots, contribute more and more to this process of news spreading. Using Twitter as a benchmark, we consider the traffic exchanged, over one month of observation, on a specific topic, namely the migration flux from Northern Africa to Italy. We measure the significant traffic of tweets only, by implementing an entropy-based null model that discounts the activity of users and the virality of tweets. Results show that social bots play a central role in the exchange of significant content. Indeed, not only the strongest hubs have a number of bots among their followers higher than expected, but furthermore a group of them, that can be assigned to the same political tendency, share a common set of bots as followers. The retwitting activity of such automated accounts amplifies the presence on the platform of the hubs' messages.
description: Under Submission
Additional file 1 of Assessing public perception of a sand fly biting study on the pathway to a controlled human infection model for cutaneous leishmaniasis
Creators: name: Parkash, Vivak
name: Jones, Georgina
name: Martin, Nina
name: Steigmann, Morgan
name: Greensted, Elizabeth
name: Kaye, Paul
name: Layton, Alison M.
name: Lacey, Charles J.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Neuroscience
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Computational Biology

description: Additional file 1. Table of themes, with quotations.
Study of Low Energy Spin Rotons in the Fractional Quantum Hall Effect
Creators: name: Mandal, Sudhansu S.
name: Jain, J. K.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Motivated by the discovery of extremely low energy collective modes in the fractional quantum Hall effect (Kang, Pinczuk {\em et al.}), with energies below the Zeeman energy, we study theoretically the spin reversed excitations for fractional quantum Hall states at $ν=2/5$ and 3/7 and find qualitatively different behavior than for $ν=1/3$. We find that a low-energy, charge-neutral "spin roton," associated with spin reversed excitations that involve a change in the composite-fermion Landau level index, has energy in reasonable agreement with experiment.
description: Postscript figures included. Accepted in Phys. Rev. B (Rapid Communication)
The Role of Odd-Frequency Pairing in Multiband Superconductors
Creators: name: Triola, Christopher
name: Cayao, Jorge
name: Black-Schaffer, Annica M.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: In this article we review recent progress in the understanding of multiband superconductivity and its relationship to odd-frequency pairing. We begin our discussion by reviewing the emergence of odd-frequency pairing in a simple two-band model, providing a brief pedagogical overview of the formalism. We then examine several examples of multiband superconducting systems in each case describing, both, the origin of the band degree of freedom and the nature of the odd-frequency pairing. Throughout, we attempt to convey a unified picture of how odd-frequency pairing emerges in these materials and propose that similar mechanisms are responsible for odd-frequency pairing in several analogous systems: layered two-dimensional heterostructures, double quantum dots, double nanowires, Josephson junctions, and systems described by isolated valleys in momentum space. We also review experimental probes of odd-frequency pairing in multiband systems, focusing on hybridization gaps in the electronic density of states, paramagnetic Meissner effect, and Kerr effect.
description: 12 pages, 2 figures
Formation of DY Center as n-type Limiting Defect in Bi-Doped Hybrid Halide Perovskites
Creators: name: Li, Jin-ling
name: Yang, Jingxiu
name: Wu, Tom
name: Wei, Su-huai
Publisher: name: arXiv
Year: 2019
Subjects: subject: Applied Physics (physics.app-ph)
subject: FOS: Physical sciences

description: It is well known that the DX center is a kind of defect that limits the n-type doping in some tetrahedral coordinated semiconductors. It is a deep negatively charged defect complex converted from a nominal shallow donor defect, which can serve as a trap center of electrons, thus is detrimental to the performance of optoelectronic devices. Similar to the DX center, we find that a donor-yielded complex center (DY center) also exists in six-fold coordinated semiconducting materials. For example, Bi is commonly expected as a shallow n-type dopant in perovskite APbX3. However, our first-principles calculations show that the DY center is formed in Bi-doped MAPbBr3 when the Fermi level is high in the gap, but, interestingly, it does not form in MAPbI3. The reason that the DY center is formed in MAPbBr3 instead of MAPbI3 is attributed to the high conduction band minimum (CBM) of MAPbBr3. Our results are able to explain recent puzzling experiment observations and the thorough discussions of the formation and the properties of the DY center in perovskites provide enlightening insights to the defect study in six-fold coordinated semiconductors.
description: 15 pages, 4 figures, under review
Additional file 1 of A data-driven metapopulation model for the Belgian COVID-19 epidemic: assessing the impact of lockdown and exit strategies
Creators: name: Coletti, Pietro
name: Libin, Pieter
name: Petrof, Oana
name: Willem, Lander
name: Abrams, Steven
name: Herzog, Sereina A.
name: Faes, Christel
name: Kuylen, Elise
name: Wambua, James
name: Beutels, Philippe
name: Hens, Niel
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1 Supporting information.
MOESM1 of How an essential Zn2Cys6 transcription factor PoxCxrA regulates cellulase gene expression in ascomycete fungi?
Creators: name: Liao, Lu-Sheng
name: Li, Cheng-Xi
name: Zhang, Feng-Fei
name: Yan, Yu-Si
name: Luo, Xue-Mei
name: Zhao, Shuai
name: Feng, Jia-Xun
Publisher: name: figshare
Year: 2019
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Computational Biology

description: Additional file 1: Table S1. Summary of transcriptomic data generated from Penicillium oxalicum.
Ivierhipidius youngi Barclay & Sw 2015, sp. nov.
Creators: name: Barclay, Maxwell V. L.
name: Sw, London
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Ripiphoridae
Ivierhipidius
Ivierhipidius youngi

description: Ivierhipidius youngi sp. nov.
(Figs 3–4, 13)
 Type locality. South America, Ecuador, Napo Province, Baeza, 2000 m a.s.l.
 Type material. HOLOTYPE: J, ‘ ECUADOR: Napo / Baeza, 2000m [pr] // 5.III.1979 / S. Marshall // CNC [printed purple card]ʼ (CNC).
  Diagnosis. Male  (holotype). Length 5.7 mm (combined length of head, pronotum and elytra measured individually), greatest width 1.5 mm across elytral shoulders. Beetle entirely very dark brown to black, except final (11 th) antennomere a sharply contrasting yellow. Abdomen missing from the only known specimen. Head, thorax and elytra coarsely and evenly punctured, puncturation of thorax less regular and more confluent than elytra; punctures of base of elytra close, becoming more widely spaced towards apex. Entire beetle covered in long semirecumbent greyish black pubescence. Elytra long, parallel-sided, 2.4× as long as wide. Legs long, covered in long greyish black pubescence.
 Differential diagnosis. This is one of the most distinctive species of the genus, the only one which is entirely black (except the apical antennomere); compared to other species, the elytra of I. youngi sp. nov. are proportionally much longer and narrower. See also the key below.
 Collection circumstances. This species is known from a single specimen collected in March at 2000 m above sea level. Circumstances of collecting are not known, though the collector is a specialist on Diptera.
 Etymology. This species is named in honour of Dr. Daniel K. Young of Wisconsin, specialist of Pyrochroidae, who kindly made material of this new taxon that he had accumulated over many years, including this specimen, available to me for study. The name is a noun in the genitive singular.
 Distribution. The only known specimen of Ivierhipidius youngi sp. nov. is from moderately high altitude (2000 metres above sea level) at Baeza, in the Canton of Quijos, Napo Province, Ecuador.
description: Published as part of Barclay, Maxwell V. L. & Sw, London, 2015, Ivierhipidius, an enigmatic new Neotropical genus of Ripiphoridae (Coleoptera: Tenebrionoidea) with four new species, pp. 691-701 in Acta Entomologica Musei Nationalis Pragae 55 (2) on page 696, DOI: 10.5281/zenodo.5303719
Additional file 2 of Development of a performance measurement system for general practitioners’ office in China’s primary healthcare
Creators: name: Ruan, Wenjie
name: Liu, Changming
name: Liao, Xiaoyang
name: Guo, Zhaoxia
name: Zhang, Yalin
name: Lei, Yi
name: Chen, Huadong
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Pharmacology
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Science Policy

description: Additional file 2. Preliminary performance measurement system.
Urn model of separation of sand
Creators: name: Lipowski, Adam
name: Droz, Michel
Publisher: name: arXiv
Year: 2001
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We introduce an urn model which describes spatial separation of sand. In this dynamical model, in a certain range of parameters spontaneous symmetry breaking takes place and equipartitioning of sand into two compartments is broken. The steady-state equation for an order parameter, a critical line, and the tricritical point on the phase diagram are found exactly. Master equation and the first-passage problem for the model are solved numerically and the results are used to locate first-order transitions. Exponential divergence of a certain characteristic time shows that the model can also exhibit very strong metastability. In certain cases characteristic time diverges as N^{z}, where N is the number of balls and z=1/2 (critical line), 2/3 (tricritical point), or 1/3 (limits of stability).
description: 10 pages, eps figures included