cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 7 of Gene expression predictions and networks in natural populations supports the omnigenic theory
Creators: name: Chateigner, Aurélien
name: Marie-Claude Lesage-Descauses
name: Rogier, Odile
name: Jorge, Véronique
name: Jean-Charles Leplé
name: Brunaud, Véronique
name: Roux, Christine Paysant-Le
name: Soubigou-Taconnat, Ludivine
name: Marie-Laure Martin-Magniette
name: Sanchez, Leopoldo
name: Segura, Vincent
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 7 Suppl. Fig. 5. Histograms of the centrality scores for the genes selected by Boruta at different p-values thresholds. Repartition of selected genes within the following gene sets is hilighted, with core in blue, peripheral NG in orange, peripheral in brown and other (NA) in black. Four p-value thhresolds for Boruta selections were considered: 0.01, 0.05, 0.1 and 0.2.
Number theoretic properties of Wronskians of Andrews-Gordon series
Creators: name: Milas, Antun
name: Mortenson, Eric
name: Ono, Ken
Publisher: name: arXiv
Year: 2005
Subjects: subject: Quantum Algebra (math.QA)
subject: Number Theory (math.NT)
subject: FOS: Mathematics

description: For positive integers $1\leq i\leq k$, we consider the arithmetic properties of quotients of Wronskians in certain normalizations of the Andrews-Gordon $q$-series $$ \prod_{1\leq n\not \equiv 0,\pm i\pmod{2k+1}}\frac{1}{1-q^n}. $$ This study is motivated by their appearance in conformal field theory, where these series are essentially the irreducible characters of $(2,2k+1)$ Virasoro minimal models. We determine the vanishing of such Wronskians, a result whose proof reveals many partition identities. For example, if $P_{b}(a;n)$ denotes the number of partitions of $n$ into parts which are not congruent to $0, \pm a\pmod b$, then for every positive integer $n$ we have $$ P_{27}(12; n)=P_{27}(6;n-1) + P_{27}(3;n-2). $$ We also show that these quotients classify supersingular elliptic curves in characteristic $p$. More precisely, if $2k+1=p$, where $p\geq 5$ is prime, and the quotient is non-zero, then it is essentially the locus of characteristic $p$ supersingular $j$-invariants in characteristic $p$.
description: 13 pages, AMS-LaTeX
Light-quark Loops in K->pi nu nu
Creators: name: Isidori, Gino
name: Smith, Christopher
name: Mescia, Federico
Publisher: name: arXiv
Year: 2005
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We present a comprehensive analysis of the contributions to K->pi nu nu decays not described by the leading dimension-six effective Hamiltonian. These include both dimension-eight four-fermion operators generated at the charm scale, and genuine long-distance contributions which can be described within the framework of chiral perturbation theory. We show that a consistent treatment of the latter contributions, which turn out to be the dominant effect, requires the introduction of new chiral operators already at O(GF^2 p^2). Using this new chiral Lagrangian, we analyze the long-distance structure of K->pi nu nu amplitudes at the one-loop level, and discuss the role of the dimension-eight operators in the matching between short- and long-distance components. From the numerical point of view, we find that these O(GF^2 LambdaQCD^2) corrections enhance the SM prediction of Br(K+->pi+ nu nu) by about 6%
A Secure Federated Learning Framework for 5G Networks
Creators: name: Liu, Yi
name: Peng, Jialiang
name: Kang, Jiawen
name: Iliyasu, Abdullah M.
name: Niyato, Dusit
name: El-Latif, Ahmed A. Abd
Publisher: name: arXiv
Year: 2020
Subjects: subject: Cryptography and Security (cs.CR)
subject: Machine Learning (cs.LG)
subject: Networking and Internet Architecture (cs.NI)
subject: FOS: Computer and information sciences

description: Federated Learning (FL) has been recently proposed as an emerging paradigm to build machine learning models using distributed training datasets that are locally stored and maintained on different devices in 5G networks while providing privacy preservation for participants. In FL, the central aggregator accumulates local updates uploaded by participants to update a global model. However, there are two critical security threats: poisoning and membership inference attacks. These attacks may be carried out by malicious or unreliable participants, resulting in the construction failure of global models or privacy leakage of FL models. Therefore, it is crucial for FL to develop security means of defense. In this article, we propose a blockchain-based secure FL framework to create smart contracts and prevent malicious or unreliable participants from involving in FL. In doing so, the central aggregator recognizes malicious and unreliable participants by automatically executing smart contracts to defend against poisoning attacks. Further, we use local differential privacy techniques to prevent membership inference attacks. Numerical results suggest that the proposed framework can effectively deter poisoning and membership inference attacks, thereby improving the security of FL in 5G networks.
description: This paper was accepted by IEEE Wireless Communications Magazine
Multi-Resolution Radiative Transfer for Line Emission
Creators: name: Juvela, M.
name: Padoan, P.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present describe a new computer code that solves the radiative transfer problem on multi-resolution grids. If the cloud model is from an MHD simulation on a regular cartesian grid, criteria based for example on local density or velocity gradients are used to refine the grid by dividing selected cells into sub-cells. Division can be repeated hierarchically. Alternatively, if the cloud model is from an MHD simulations with adaptive mesh refinement, the same multi-resolution grid used for the MHD simulation is adopted in the radiative transfer calculations. High discretization is often needed only in a small fraction of the total volume. This makes it possible to simulate spectral line maps with good accuracy, also minimizing the total number of cells and the computational cost (time and memory). Multi-resolution models are compared with models on regular grids. In the case of moderate optical depths (tau ~ a few) an accuracy of 10% can be reached with multi-resolution models where only 10% of the cells of the full grid are used. For optically thick species (tau~100), the same accuracy is achieved using 15% of the cells. The relation between accuracy and number of cells is not found to be significantly different in the two MHD models we have studied. The new code is used to study differences between LTE and non-LTE spectra and between isothermal and non-isothermal cloud models. We find significant differences in line ratios and individual spectral line profiles of the isothermal and LTE models relative to the more realistic non-isothermal case. The slope of the power spectrum of integrated intensity is instead very similar in all models.
description: Submitted to ApJ, 34 pages, 14 figures
Additional file 6 of Gene expression predictions and networks in natural populations supports the omnigenic theory
Creators: name: Chateigner, Aurélien
name: Marie-Claude Lesage-Descauses
name: Rogier, Odile
name: Jorge, Véronique
name: Jean-Charles Leplé
name: Brunaud, Véronique
name: Roux, Christine Paysant-Le
name: Soubigou-Taconnat, Ludivine
name: Marie-Laure Martin-Magniette
name: Sanchez, Leopoldo
name: Segura, Vincent
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 6 Suppl. Fig. 4. Histograms of the centrality scores without (top) or with (bottom) the grey group. Core, peripheral and peripheral without grey sets are represented respectively by the blue, dark orange and orange bars. Random sets are distributed across the histogram and do not appear on this figure. Distribution of genes clustered in the grey module is represented by the grey bars, white bars are for other genes.
Distinguishing $W'$ Signals at Hadron Colliders Using Neural Networks
Creators: name: Chang, Spencer
name: Chen, Ting-Kuo
name: Chiang, Cheng-Wei
Publisher: name: arXiv
Year: 2020
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We investigate a neural network-based hypothesis test to distinguish different $W'$ and charged scalar resonances through the $\ell+\require{cancel}\cancel{E}_T$ channel at hadron colliders. This is traditionally challenging due to a four-fold ambiguity at proton-proton colliders, such as the Large Hadron Collider. Of the neural network approaches we studied, we find a multi-class classifier based on a fully-connected neural network trained upon 2D histograms made from kinematic variables of the final state $\ell$ to be the most powerful. Furthermore, by considering the 1-jet processes, we demonstrate that one can generalize to multiple $2D$ histograms to represent different variable pairs. Finally, as a comparison to traditional approaches, we compare our method with Bayesian hypothesis testing and discuss the pros and cons of each approach. The neural network scheme presented in this paper is a powerful tool that can help probe the properties of charged resonances.
description: 44 pages, 22 figures
Additional file 2 of The potential role of patent and proprietary medicine vendors’ associations in improving the quality of services in Nigeria’s drug shops
Creators: name: Oyeyemi, Abisoye S.
name: Oladimeji Oladepo
name: Adedayo O. Adeyemi
name: Musibau A. Titiloye
name: Burnett, Sarah M.
name: Iorwakwagh Apera
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Cancer
subject: Science Policy

description: Additional file 2. Focus Group Discussion. This is the guide used for the focus group discussion with the PPMVs about their membership of NAPPMED - benefits and challenges, and knowledge of malaria diagnosis and treatment.
Additional file 5 of Gene expression predictions and networks in natural populations supports the omnigenic theory
Creators: name: Chateigner, Aurélien
name: Marie-Claude Lesage-Descauses
name: Rogier, Odile
name: Jorge, Véronique
name: Jean-Charles Leplé
name: Brunaud, Véronique
name: Roux, Christine Paysant-Le
name: Soubigou-Taconnat, Ludivine
name: Marie-Laure Martin-Magniette
name: Sanchez, Leopoldo
name: Segura, Vincent
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 5 Suppl. Fig. 3. Relationship between Spearman’s correlations between module-trait (y-axis) and gene significance-kME (x-axis).
An Examination of Behaviors and Attitudes toward Food Based on the Self-Reported Desire to Lose Weight: A Comparison of Two Groups in the United States and Italy
Creators: name: McGarry Wolf, Marianne
name: Bertolini, Paola
name: Matheson, Traci A.
name: Pringle, Kylie
name: McGarry Wolf, Marianne
name: Bertolini, Paola
name: Matheson, Traci A.
name: Pringle, Kylie
Publisher: name: Unknown
Year: 2008
Subjects: Food Consumption/Nutrition/Food Safety
Health Economics and Policy

description: This research uses a survey instrument in the United States and Italy to examine the relationship between consumers’ demographics, attitudes, and behaviors toward food purchasing and their self-described desire to lose weight. Approximately two-thirds of consumers in the United States and slightly over half of consumers in Italy indicated a desire to lose weight. Married consumers with children in the household in both countries are more likely to desire to lose weight. Furthermore, consumers from both countries who desire to lose weight were more likely to agree that “the main meal of the day is the most important time of the day for my household.” Although the main meal of the day is more important to consumers from both countries who desire to lose weight, consumers in the United States who desire to lose weight were more likely to indicate that every member of their families eat the main meal together. Consumers in Italy who desire to lose weight were less likely to indicate that every member of their families eat the main meal together. The self-described overweight consumers in both countries enjoy cooking and have sufficient food for their families. However, the overweight consumer in the United States is often too busy to cook. This research finds no difference in the number of meals eaten away from home in a typical week between those in each country who desire to lose weight and those who do not. Furthermore, in the United States the sources of foods eaten away from home, such as fast food, are not related to the importance to the consumer of weight loss.
title: Gray city of the Midway: the University of Chicago and the search for American urban culture, 1890-1932
Creators: name: Gage, Stephen
Publisher: name: University of Reading
Year: 2018

description: This research examines the American industrial city in the early twentieth century and the role of cultural institutions in the shift to an urban-oriented society. In-depth analysis of the University of Chicago’s architecture and planning traces how urban form emerged gradually as an assimilation of different traditions. It challenges a planning literature reliant on narrowly-prescribed categories and qualifies recent cultural histories that give a more nuanced portrayal of Progressive Era urban culture but which fail to consider the built environment directly. The research’s critical questions reconsider the role of nature within the city, the definition of the urban public, and the intertwining of commerce and civic culture. Its methodology uses original analytic drawings which trace how the University expanded over time, united with consideration of previously-unexplored written and visual archives. This combination of analytic mapping and archival investigation on one institution reveals new insights into how the industrial city was shaped as a whole. The findings identify paradoxes in the University’s planning, which promoted the dynamism of the modern city while evoking the image of bucolic Oxbridge. These contradictory impulses were enhanced by the University’s location on the Midway Plaisance, a public boulevard typifying the urban/rural hybridity of Chicago’s park system. The result was an urbanised nature, or the charged proximity of urban density and pastoral green space. Disputing the perceived eclipse of the nineteenth-century Parks movement, the term ‘urbanised nature’ suggests how earlier concern for naturalistic landscape was fused with the ideals of twentieth-century Progressivism. The research also contests previous emphasis on the exclusionary cultural practices of this period, as the heterogeneous development of the University’s Collegiate Gothic campus reveals a struggle to balance commercial interests, pastoral imagery, and monumental urban display. More broadly, this research sheds new light on the contradictions that shaped the American city in the early twentieth century—an urban culture driven by the contentious relationship between industrial capitalism and civic institutions, a public realm animated by mass appeal and elite tradition, and a spatial order drawn from urban and rural models.
Il cinema tedesco nel primo Dopoguerra. Il rapporto fra film, inconscio collettivo e percezione dell’opera d’arte
Creators: name: Abbruzzese, Daniele
Publisher: name: Aisthesis. Pratiche, linguaggi e saperi dell’estetico
Year: 2012

description: Because of their relative autonomy from the cultural industry, German films of the Twenties are an interesting field to try an analysis on the psychologic attitudes of a society or an age. The themes of films from this era will be examined in this essay: the frequent representation of tragic stories, the role of repression, wich the film has, the construction of monumental atmospheres. The cardinal skill of this work is in facts to show how films affected everyone´s aesthetic reception at those time, as it liquidates every association with the past and prepares an apperception, that has been useful for authoritarian systems.
description: Aisthesis. Pratiche, linguaggi e saperi dell’estetico, Vol. 3 No. 2 (2010): Costellazioni tempestive. Warburg- Adorno-Benjamin, Adorno
La musique et le rêve
Creators: name: Hirt, André
Publisher: name: Aisthesis. Pratiche, linguaggi e saperi dell’estetico
Year: 2012

description: Adorno, in his posthumous work Beethoven. Philosophy of music, grasps the deep relationship between music and dream: “we are in music, as well as we are in dream”. Music is the coming of a non-intentional truth, that is never caught by images and words. In the same way, dream follows the logic of a non-giudicatory synthesis and is incompatible with the category of dialectical totality: in dream, truth announces her-self as it fades out. According to Adorno, the dimension of opening typical to dream and music collides with the pretension of philosophical discourse that aims at the total revelation.
description: Aisthesis. Pratiche, linguaggi e saperi dell’estetico, Vol. 3 No. 2 (2010): Costellazioni tempestive. Warburg- Adorno-Benjamin, Adorno
Additional file 3 of Gene expression predictions and networks in natural populations supports the omnigenic theory
Creators: name: Chateigner, Aurélien
name: Marie-Claude Lesage-Descauses
name: Rogier, Odile
name: Jorge, Véronique
name: Jean-Charles Leplé
name: Brunaud, Véronique
name: Roux, Christine Paysant-Le
name: Soubigou-Taconnat, Ludivine
name: Marie-Laure Martin-Magniette
name: Sanchez, Leopoldo
name: Segura, Vincent
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3 Suppl. Fig. 1. PCA score plots on gene expression data. Each plot represents the distribution of the individuals on the 2 first axes of the PCA (representing 17,7% of the variation), colored by class of various experimental factors (Xylem and cambium scraper, extractor and extraction method, population, sequencing column, line and plate, the growth rate at harvest, sampling date, time, temperature, solar radiation, humidity and wind speed). Cofactors related to weather are presented in the 6 lower plots.
Suppression of Decoherence tied to Electron-Phonon Coupling in Telecom-Compatible Quantum Dots: Low-threshold Reappearance Regime for Quantum State Inversion
Creators: name: Ramachandran, A.
name: Wilbur, G. R.
name: O'Neal, S.
name: Deppe, D. G.
name: Hall, K. C.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We demonstrate full suppression of dephasing tied to deformation potential coupling of confined electrons to longitunidal acoustic (LA) phonons in optical control experiments on large semiconductor quantum dots (QDs) with emission compatible with the low-dispersion telecommunications band at 1.3~$μ$m. By exploiting the sensitivity of the electron-phonon spectral density to the size and shape of the QD, we demonstrate a four-fold reduction in the threshold pulse area required to enter the decoupled regime for exciton inversion using adiabatic rapid passage (ARP). Our calculations of the quantum state dynamics provide good agreement with our experimental results and indicate that the symmetry of the QD wave function provides an additional means to engineer the electron-phonon interaction. Our findings will support the development of solid-state quantum emitters in future distributed quantum networks using semiconductor QDs.
Additional file 1 of Ethnozoological and commercial drivers of the pangolin trade in Benin
Creators: name: Zanvo, Stanislas
name: Djagoun, Sylvestre C. A. M.
name: Azihou, Fortuné A.
name: Djossa, Bruno
name: Sinsin, Brice
name: Gaubert, Philippe
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 1. Questionnaire sur l’ethnozoologie et le commerce des pangolins.
A classical cosmological model for triviality
Creators: name: Salehi, H.
name: Moyassari, P.
name: Rashidi, R.
Publisher: name: arXiv
Year: 2004
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: The aim of this paper is to study the triviality of $λϕ^{4}$ theory in a classical gravitational model. Starting from a conformal invariant scalar tensor theory with a self-interaction term $λϕ^{4}$, we investigate the effect of a conformal symmetry breaking emerging from the gravitational coupling of the large-scale distribution of matter in the universe. Taking in this cosmological symmetry breaking phase the infinite limit of the maximal length (the size of the universe) and the zero limit of the minimal length (the Planck length) implies triviality, i.e. a vanishing coupling constant $λ$. It suggests that the activity of the self-interaction term $λϕ^{4}$ in the cosmological context implies that the universe is finite and a minimal fundamental length exists.
description: 6 pages,no figures
Expanding Farm-Fresh Direct-Marketing Opportunities in the 21st Century
Creators: name: German, Carl L.
name: Toensmeyer, Ulrich C.
name: Hopkins, Turner
name: VanVranken, Richard
name: Smith, Linda
name: German, Carl L.
name: Toensmeyer, Ulrich C.
name: Hopkins, Turner
name: VanVranken, Richard
name: Smith, Linda
Publisher: name: Unknown
Year: 2008
Subjects: subject: Marketing
subject: FOS: Economics and business

description: Direct-marketing and agri-tourism businesses have recently begun to promote their businesses using stand-alone websites allowing them to tap into a larger customer base. This has created a need for direct farm markets to identify the products and services consumers are demanding from online sources. This project proposes to conduct an online survey of consumer preferences in buying direct from the farmer vs. the types of products consumers are seeking on the Internet. Our hypothesis is that the use of stand-alone web sites limit the number of consumers that farm marketers are reaching due to the time and expense involved in keeping them updated. This online survey will collect information useful in describing how farm marketers can use the Internet to increase their customer base and individual profits.
Additional file 6 of Radiobiological model-based approach to determine the potential of dose-escalated robust intensity-modulated proton radiotherapy in reducing gastrointestinal toxicity in the treatment of locally advanced unresectable pancreatic cancer of the head
Creators: name: Raturi, Vijay P.
name: Hidehiro Hojo
name: Hotta, Kenji
name: Baba, Hiromi
name: Takahashi, Ryo
name: Rachi, Toshiya
name: Nakamura, Naoki
name: Sadamoto Zenda
name: Motegi, Atsushi
name: Hidenobu Tachibana
name: Takaki Ariji
name: Motegi, Kana
name: Nakamura, Masaki
name: Okumura, Masayuki
name: Hirano, Yasuhiro
name: Akimoto, Tetsuo
Publisher: name: figshare
Year: 2020
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 6.
Transfer learning for materials informatics using crystal graph convolutional neural network
Creators: name: Lee, Joohwi
name: Asahi, Ryoji
Publisher: name: arXiv
Year: 2020
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: For successful applications of machine learning in materials informatics, it is necessary to overcome the inaccuracy of predictions ascribed to insufficient amount of data. In this study, we propose a transfer learning using a crystal graph convolutional neural network (TL-CGCNN). Herein, TL-CGCNN is pretrained with big data such as formation energies for crystal structures, and then used for predicting target properties with relatively small data. We confirm that TL-CGCNN can improve predictions of various properties such as bulk moduli, dielectric constants, and quasiparticle band gaps, which are computationally demanding, to construct big data for materials. Moreover, we quantitatively observe that the prediction of properties in target models via TL-CGCNN becomes more accurate with an increase in size of training dataset in pretrained models. Finally, we confirm that TL-CGCNN is superior to other regression methods in the predictions of target properties, which suffer from small amount of data. Therefore, we conclude that TL-CGCNN is promising along with compiling big data for materials that are easy to accumulate and relevant to the target properties.
description: Published in Comp. Mater. Sci
Opportunities and Challenges for the Next Generation of Cartographers: An Inclusive Workshop Study with Early-Career Cartography Professionals
Creators: name: Nestel, Chelsea
name: Słomska-Przech, Katarzyna
name: Ledermann, Florian
name: Bogucka, Edyta P.
name: Vörös, Fanni
name: Meier, Sebastian
name: Roth, Robert E.
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Medicine
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Here, we introduce Next Generation Cartographers, a Working Group of the International Cartographic Association (ICA) Students and early-career professionals today learn cartographic design alongside a diverse array of conceptual and technical competencies and, therefore, are working at the forefront of the discipline. However, they typically are not among the leading voices within the cartography community simply due to experience. To this end, we organized a Next Generation Cartographers (NGC) workshop at EuroCarto 2022 to identify opportunities and challenges for the next generation of cartographers. During our discussions, advocacy, peer support, mentorship, and outreach emerged as key needs of next generation cartographers and, ultimately, the need for NGC to have a voice in ICA planning. Inclusion became a core value of NGC to promote safety and diversity across the cartography community. NGC opened to global membership in August 2023 at the International Cartographic Conference in Cape Town, South Africa, and became a Working Group in autumn 2023.
Additional file 4 of Gene expression predictions and networks in natural populations supports the omnigenic theory
Creators: name: Chateigner, Aurélien
name: Marie-Claude Lesage-Descauses
name: Rogier, Odile
name: Jorge, Véronique
name: Jean-Charles Leplé
name: Brunaud, Véronique
name: Roux, Christine Paysant-Le
name: Soubigou-Taconnat, Ludivine
name: Marie-Laure Martin-Magniette
name: Sanchez, Leopoldo
name: Segura, Vincent
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 4 Suppl. Fig. 2. Traits hierarchical ascendant clustering dendrogram. Clustering was performed from the correlations between traits with Ward method ("Ward.D2") by the R package pvclust. Approximately Unbiased (au, in red) and Bootstrap Probability (bp, in green) p-values indicated the degree of belief associated with clusters. Highly supported modules are framed by a red square, grouping (a) the mean sample diameter with the two circumference traits, (b) the S/G ratios with glucose composition, (c) the two C5/C6 together, and (d) the H/G ratios.
Additional file 1 of The IS6 family, a clinically important group of insertion sequences including IS26
Creators: name: Varani, Alessandro
name: Susu He
name: Siguier, Patricia
name: Ross, Karen
name: Chandler, Michael
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 1: Figure S1a-g. Left (IRL) and right IRR and a combined IRL + IRR inverted terminal repeats for each clade are shown in WebLogo format [25]. Figure S1h. The last section shows an alignment of the ends of clade Aiv adjusted by hand.
Properties of trapped electromagnetic modes in coupled waveguides
Creators: name: Annino, G.
name: Yashiro, H.
name: Cassettari, M.
name: Martinelli, M.
Publisher: name: arXiv
Year: 2005
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: Classical Physics (physics.class-ph)
subject: FOS: Physical sciences

description: The existence of trapped modes in coupled electromagnetic waveguides is experimentally investigated for configurations with different degrees of symmetry supporting hybrid modes. The occurrence of confined solutions in such open geometries is proven to be much more general than demonstrated so far, as predicted by Goldstone and Jaffe [J. Goldstone and R. L. Jaffe, Phys. Rev. B 45, 14100 (1992)]. The identification of the observed modes is based on the numerical modeling of the relative vector fields. The experimental results evidence as an increasing aperture of the configuration can improve the confinement of the mode instead of generating additional leakage channels. In particular, long-lived trapped modes can be easily obtained in geometries with a relevant degree of aperture. Their resonance parameters can compete with those of standard close cavities working at millimeter wavelengths. The role of the symmetry on the properties of these trapped modes is discussed in detail.
description: 14 pages, 4 figures; revised version with new title and minor modifications in the text
Finite temperature properties of quantum Lifshitz transitions between valence bond solid phases: An example of `local' quantum criticality
Creators: name: Ghaemi, Pouyan
name: Vishwanath, Ashvin
name: Senthil, T.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We study the finite temperature properties of quantum magnets close to a continuous quantum phase transition between two distinct valence bond solid phases in two spatial dimension. Previous work has shown that such a second order quantum `Lifshitz' transition is described by a free field theory and is hence tractable, but is nevertheless non-trivial. At $T>0$, we show that while correlation functions of certain operators exhibit $ω/T$ scaling, they do not show analogous scaling in space. In particular, in the scaling limit, all such correlators are purely {\em local} in space, although the same correlators at T=0 decay as a power law. This provides a valuable microscopic example of a certain kind of `local' quantum criticality. The local form of the correlations arise from the large density of soft modes present near the transition that are excited by temperature. We calculate exactly the autocorrelation function for such operators in the scaling limit. Going beyond the scaling limit by including irrelevant operators leads to finite spatial correlations which are also obtained.
Proof of a Momentum/Complexity Correspondence
Creators: name: Barbon, J. L. F.
name: Martin-Garcia, J.
name: Sasieta, M.
Publisher: name: arXiv
Year: 2020
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We show that the holographic Complexity = Volume proposal satisfies a very general notion of Momentum/Complexity correspondence (PC), based on the Momentum Constraint of General Relativity. It relates the rate of complexity variation with an appropriate matter momentum flux through spacelike extremal surfaces. This formalizes the intuitive idea that `gravitational clumpling' of matter increases complexity, and the required notion of `infall momentum' is shown to have a Newtonian avatar which expresses this idea. The proposed form of the PC correspondence is found to be exact for any solution of Einstein's equations in 2+1 dimensions, and any spherically symmetric solution in arbitrary dimensions, generalizing all previous calculations using spherical thin shells. Gravitational radiation enters through a correction which does not have a straightforward interpretation as a PC correspondence. Other obstructions to an exact PC duality have a topological origin and arise in the presence of wormholes.
description: 10 pages, 2 figures. Published version
Additional file 1 of The potential role of patent and proprietary medicine vendors’ associations in improving the quality of services in Nigeria’s drug shops
Creators: name: Oyeyemi, Abisoye S.
name: Oladimeji Oladepo
name: Adedayo O. Adeyemi
name: Musibau A. Titiloye
name: Burnett, Sarah M.
name: Iorwakwagh Apera
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Cancer
subject: Science Policy

description: Additional file 1. PPMV knowledge survey with drug audit. This is the questionnaire used to collect data about the demographics, knowledge of malaria diagnosis and treatment, involvement of PPMV with NAPPMED and to assess the stock of antimalarial medicines in the drug shop.
Linear response theory for magnetic Schroedinger operators in disordered media
Creators: name: Bouclet, Jean-Marc
name: Germinet, Francois
name: Klein, Abel
name: Schenker, Jeffrey H.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences
subject: Primary 82B44; Secondary 47B80, 60H25

description: We justify the linear response theory for an ergodic Schroedinger operator with magnetic field within the non-interacting particle approximation, and derive a Kubo formula for the electric conductivity tensor. To achieve that, we construct suitable normed spaces of measurable covariant operators where the Liouville equation can be solved uniquely. If the Fermi level falls into a region of localization, we recover the well-known Kubo-Streda formula for the quantum Hall conductivity at zero temperature.
description: Latex, 68 pages, misprints corrected, formatting changed
Neutron-neutron correlation in the halo dissociation of light exotic nuclei
Creators: name: Yamashita, M. T.
name: Frederico, T.
name: Tomio, Lauro
Publisher: name: arXiv
Year: 2005
Subjects: subject: Nuclear Theory (nucl-th)
subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: We present model results for the two-halo-neutron correlation functions, $C_{nn}$, for the dissociation process of light exotic nuclei modelled as two neutrons and a core. A minimum is predicted for $C_{nn}$ as a function of the relative momentum of the two neutrons, $p_{nn}$, due to the coherence of the neutrons in the halo and final state interaction. Studying the systems $^{14}$Be, $^{11}$Li and $^{6}$He within this model, we show that the numerical asymptotic limit, $C_{nn}\to 1$, occurs only for $p_{nn}\gtrsim$ 400 MeV$/c$, while such limit is reached for much lower values of $p_{nn}$ in an independent particle model as the one used in the analysis of recent experimental data. Our model is consistent with data once the experimental correlation function is appropriately normalized.
description: 5 pages, 3 figures - Accepted for publication in Phys. Rev. C (Rapid Communication)
title: Acrylamide mitigation in coffee by asparaginase application
Creators: name: Xu, Fei
Publisher: name: University of Reading
Year: 2018

description: Acrylamide is a Group 2B carcinogen compound formed in certain foods when they are heated above 100C. The use of the enzyme asparaginase is becoming increasingly popular as a means of reducing acrylamide formation in cooked foods. Asparaginase converts the acrylamide precursor asparagine to aspartic acid. Roast coffee is one of the major sources of acrylamide in the human diet. In this thesis, asparaginase solution was initially delivered into green coffee beans by a steam & soak method. Hence, acrylamide in the roasted coffee was significantly reduced (40-91%). However, the steam & soak method showed adverse effects, including precursor loss (amino acids 20–30%, sucrose 38%, glucose 47%) and silver skin loss. To examine the impact of enzyme treatment on the aroma of roasted coffee, volatile determination was carried out. Significant differences were found (10% of identified compounds) in a broad variety of chemical families (aldehydes, ketones, furans, phenols and pyrazines). A series of sensory analyses was carried out to identify the impact of enzyme treatment on coffee organoleptic properties. Sensory analysis using descriptive and discrimination tests found significant differences (12 and 17 out of 39 attributes in light roast and medium roast groups, respectively) between enzyme-treated beans and untreated beans. Preference tests, however, showed that control and treated samples were of similar acceptability, with no unpleasant flavours or aromas associated with the enzyme treated group. Finally, a novel vacuum infusion method was used to reduce the adverse effect of the steam & soak method. The results indicated the vacuum infusion method (21–56% acrylamide reduction) was not as effective as the steam & soak method (40–91%). In conclusion, our research confirmed that the enzymatic approach could successfully reduce acrylamide in coffee. However, as the coffee had tight internal structure, the enzyme treatment process would cause the loss of silver skin on coffee beans. The consequence of this loss was a darker roast in the enzyme treated samples. The shift of roast extent leads to significant differences in volatile compounds profile and organoleptic properties of the coffee beans. The vacuum infusion experiment was carried out to reduce the loss of silver skin issue while maintaining the high acrylamide reduction rate. However, the results indicate that the vacuum failed to allow asparaginase to penetrate the coffee and still resulted in great silver skin loss. Future research should focus on minimising the adverse effect of enzyme treatment while maintaining sufficient contact of enzyme and substrate.
CSB-RNN: A Faster-than-Realtime RNN Acceleration Framework with Compressed Structured Blocks
Creators: name: Shi, Runbin
name: Dong, Peiyan
name: Geng, Tong
name: Ding, Yuhao
name: Ma, Xiaolong
name: So, Hayden K. -H.
name: Herbordt, Martin
name: Li, Ang
name: Wang, Yanzhi
Publisher: name: arXiv
Year: 2020
Subjects: subject: Distributed, Parallel, and Cluster Computing (cs.DC)
subject: Signal Processing (eess.SP)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: C.1.4

description: Recurrent neural networks (RNNs) have been widely adopted in temporal sequence analysis, where realtime performance is often in demand. However, RNNs suffer from heavy computational workload as the model often comes with large weight matrices. Pruning schemes have been proposed for RNNs to eliminate the redundant (close-to-zero) weight values. On one hand, the non-structured pruning methods achieve a high pruning rate but introducing computation irregularity (random sparsity), which is unfriendly to parallel hardware. On the other hand, hardware-oriented structured pruning suffers from low pruning rate due to restricted constraints on allowable pruning structure. This paper presents CSB-RNN, an optimized full-stack RNN framework with a novel compressed structured block (CSB) pruning technique. The CSB pruned RNN model comes with both fine pruning granularity that facilitates a high pruning rate and regular structure that benefits the hardware parallelism. To address the challenges in parallelizing the CSB pruned model inference with fine-grained structural sparsity, we propose a novel hardware architecture with a dedicated compiler. Gaining from the architecture-compilation co-design, the hardware not only supports various RNN cell types, but is also able to address the challenging workload imbalance issue and therefore significantly improves the hardware efficiency.
MHV-Vertices for Gravity Amplitudes
Creators: name: Bjerrum-Bohr, N. E. J.
name: Dunbar, David C.
name: Ita, Harald
name: Perkins, Warren B.
name: Risager, Kasper
Publisher: name: arXiv
Year: 2005
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We obtain a CSW-style formalism for calculating graviton scattering amplitudes and prove its validity through the use of a special type of BCFW-like parameter shift. The procedure is illustrated with explicit examples.
description: 21 pages, minor typos corrected, proof added in section 4
Quadrature entanglement and photon-number correlations accompanied by phase-locking
Creators: name: Adamyan, H. H.
name: Adamyan, N. H.
name: Manvelyan, S. B.
name: Kryuchkyan, G. Yu.
Publisher: name: arXiv
Year: 2005
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We investigate quantum properties of phase-locked light beams generated in a nondegenerate optical parametric oscillator (NOPO) with an intracavity waveplate. This investigation continuous our previous analysis presented in Phys.Rev.A 69, 05814 (2004), and involves problems of continuous-variable quadrature entanglement in the spectral domain, photon-number correlations as well as the signatures of phase-locking in the Wigner function. We study the role of phase-localizing processes on the quantum correlation effects. The peculiarities of phase-locked NOPO in the self-pulsing instability operational regime are also cleared up. The results are obtained in both the P-representation as a quantum-mechanical calculation in the framework of stochastic equations of motion, and also by using numerical simulation based on the method of quantum state diffusion.
description: Subm. to PRA
Carbon Monoxide in low-mass dwarf stars
Creators: name: Jones, Hugh R. A.
name: Pavlenko, Yakiv
name: Viti, Serena
name: Barber, R. J.
name: Yakovina, Larisa A.
name: Pinfield, David
name: Tennyson, Jonathan
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We compare high resolution infrared observations of the CO 3-1 bands in the 2.297-2.310 micron region of M dwarfs and one L dwarf with theoretical expectations. We find a good match between the observational and synthetic spectra throughout the 2000-3500K temperature regime investigated. Nonetheless, for the 2500-3500 K temperature range the temperatures that we derive from synthetic spectral fits are higher than expected from more empirical methods by several hundred K. In order to reconcile our findings with the empirical temperature scale it is necessary to invoke warming of the model atmosphere used to construct the synthetic spectra. We consider that the most likely reason for the back-warming is missing high temperature opacity due to water vapour. We compare the water vapour opacity of the Partridge & Schwenke (1997) line list used for the model atmosphere with the output from a preliminary calculation by Barber & Tennyson (2004). While the Partridge & Schwenke line list is a reasonable spectroscopic match for the new line list at 2000 K, by 4000 K it is missing around 25% of the water vapour opacity. We thus consider that the offset between empirical and synthetic temperature scales is explained by the lack of hot water vapour used for computation of the synthetic spectra. For our coolest objects with temperatures below 2500 K we find best fits when using synthetic spectra which include dust emission. Our spectra also allow us to constrain the rotational velocities of our sources, and these velocities are consistent with the broad trend of rotational velocities increasing from M to L.
description: Accepted for publication in MNRAS (9 pages, 33 figures)
Light-cone formulation of conformal field theory adapted to AdS/CFT correspondence
Creators: name: Metsaev, R. R.
Publisher: name: arXiv
Year: 2005
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Light-cone formulation of conformal field theory in space-time of arbitrary dimension is developed. Conformal fundamental and shadow fields with arbitrary conformal dimension and arbitrary spin are studied. Representation of conformal algebra generators on space of conformal fundamental and shadow fields in terms of spin operators which enter in light-cone gauge formulation of field dynamics in AdS space is found. As an example of application of light-cone formalism we discuss AdS/CFT correspondence for massive arbitrary spin AdS fields and corresponding boundary CFT fields at the level of two point function.
description: 12 pages, LaTeX-2e, v2: typos corrected, following Phys.Lett.B referee's advice the title is changed
Nucleon-nucleon coincidence measurement in the non-mesonic weak decay of 5_Lambda-He and 12_Lambda-C hypernuclei
Creators: name: Okada, S.
name: Ajimura, S.
name: Aoki, K.
name: Banu, A.
name: Bhang, H. C.
name: Fukuda, T.
name: Hashimoto, O.
name: Hwang, J. I.
name: Kameoka, S.
name: Kang, B. H.
name: Kim, E. H.
name: Kim, J. H.
name: Kim, M. J.
name: Maruta, T.
name: Miura, Y.
name: Miyake, Y.
name: Nagae, T.
name: Nakamura, M.
name: Nakamura, S. N.
name: Noumi, H.
name: Okayasu, Y.
name: Outa, H.
name: Park, H.
name: Saha, P. K.
name: Sato, Y.
name: Sekimoto, M.
name: Takahashi, T.
name: Tamura, H.
name: Tanida, K.
name: Toyoda, A.
name: Tsukada, K.
name: Watanabe, T.
name: Yim, H. J.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: We have measured both yields of neutron-proton and neutron-neutron pairs emitted from the non-mesonic weak decay process of 5_Lambda-He and 12_Lambda-C hypernuclei produced via the (pi^+,K^+) reaction for the first time. We observed clean back-to-back correlation of the np- and nn-pairs in the coincidence spectra for both hypernuclei. The ratio of those back-to-back pair yields, Nnn / Nnp, must be close to the ratio of neutron- and proton-induced decay widths of the decay, Gn(Lambda n -> nn)/Gp(Lambda p -> np). The obtained ratios for each hypernuclei support recent calculations based on short-range interactions.
description: 4 pages, 1 figure, International Nuclear Physics Conference (INPC 2004), Goteborg, Sweden, June 27 - July 2, 2004, to appear in Nuclear Physics A