Karenia brevis EH
Creators: name: Sun, Pengfei
name: Leeson, Cristian
name: Zhi, Xiaoduo
name: Leng, Fenfei
name: Pierce, Richard H.
name: Henry, Michael S.
name: Rein, Kathleen S.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Cicadidae
Karenia
Karenia brevis

description: 4.7. Cloning and expression of K. brevis EH1   
 Contig MGID2034061 of a K. brevis EST library (Lidie et al., 2005) was synthesized (after optimization of codon usage for E. coli expression) and cloned into pUC 57 by Genescript. The insert was subcloned into pET30a+ vector for protein expression: Specific primers (Forward: CACAATCATATGCCGCTGACGGA, Reverse: AATAAGCTTTAATGATGATGATGATGATGCAGACGGCTCTGATTTTTAT) were designed to amplify the codon optimized K. brevis EH. Primers incorporated HindIII (reverse primer) and NdeI (forward primer) restriction sites for directional cloning and 6 histidine codons (reverse primer). The PCR product was ligated with pET30a+ using T4 DNA ligase (Invitrogen) according to the manufacturer’s instructions. The newly constructed plasmid was transformed into expression strain BL21(DE3) by electroporation. Recombinant cells were grown following manufacturer’s guide (Invitrogen). White colonies were picked and grown in LB broth with kanamycin (50 Lg/ml).Plasmids were extracted using QIAprep Spin Miniprep Kit (Qiagen) according to the manufacturer’s instruction and sent to Eurofins Genomics for sequencing to insure fidelity of insert sequence. The recombinant E. coli was inoculated into LB broth with kanamycin (50 Lg/ml) and shaken at 37 °C overnight. The overnight culture (5 ml) was diluted into fresh LB broth (500 ml) with kanamycin (50 Lg/ml), shaken at 37 °C (250 rpm for 2–3 h). IPTG (1 mM final concentration) was added when the OD 600 reached to 0.6–0.8. After shaking another 4–6 h, the culture was centrifuged (5000× g for 10 min). Lysozyme (2 Ll, 50 mg /ml) and DNAse I (2 Ll, 2500 unit/ ml) as well as Bacterial Protein Extraction reagent (B-PER, Thermal Scientific, 4 ml/ gram of cells) were added to resuspend the pellets. After incubation at room temperature for 10 min, the lysate was centrifuged (15000× g for 5 min) to separate insoluble proteins. The supernatant was loaded to a column of 1 ml Ni–NTA agarose (Qiagen). The column was washed (20 mM phosphate, 0.5 M NaCl, 20 mM imidazole, 10% glycerol, pH 7.9) until no more protein was eluted (as determined by A 280) in the wash (typically 10 ml). This was followed by elution buffer (10 ml, 20 mM phosphate, 0.5 M NaCl, 250 mM imidazole, 10% glycerol, pH 7.9). The purified EH was dialyzed (MW cutoff 12–14 kDa) in phosphate buffer (50 mM sodium phosphate, pH 7.0) at 0–4 °C, overnight, flash frozen in liquid N 2 and stored at –80 °C until use. Final protein concentrations ranged from 0.2 to 0.3 mg /ml.
description: Published as part of Sun, Pengfei, Leeson, Cristian, Zhi, Xiaoduo, Leng, Fenfei, Pierce, Richard H., Henry, Michael S. & Rein, Kathleen S., 2016, Characterization of an epoxide hydrolase from the Florida red tide dinoflagellate, Karenia brevis, pp. 11-21 in Phytochemistry 122 on page 19, DOI: 10.1016/j.phytochem.2015.11.002, http://zenodo.org/record/10485359