cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Bioinformatics design of MiniPromoters for targeted delivery of expression
Creators: name: Fornes, Oriol
Publisher: name: F1000 Research Limited
Year: 2018

description: Gene therapy has re-emerged as a viable treatment for rare genetic disorders. Key to recent progress in the field is non-insertional gene delivery using adeno-associated virus (AAV) vectors. Limited by the restricted payload capacity of AAV vectors, most AAV-based gene therapies use small, ubiquitous promoters. As a result, off-target expression of the therapeutic gene can occur, which may in turn have undesired side effects. In this context, designing selective promoters that restrict the expression of the therapeutic genes to the clinically relevant cells is an important research goal. In the past, we have shown the capacity to design compact, selective promoter sequences (i.e. MiniPromoters) for targeting specific cells within the brain and eye. The design of a MiniPromoter was a manual process involving three steps: 1) literature search for a gene with restricted expression patterns in the target cells; 2) identification of the cis-regulatory regions (CRRs) of that gene (i.e. promoter and enhancers); and 3) assembly of a subset of the gene’s CRRs into a MiniPromoter sequence. We are developing the OnTarget software to automate the design of MiniPromoters. It has three main components: 1) a Data Repository linking thousands of public processed experiments (CAGE, GRO-seq, ATAC-seq, DNase-seq, ChIP-seq, Hi-C, etc.) from multiple human primary cells, tissues and cell lines with in-house data collections (JASPAR, MANTA, allele-specific binding events, etc.); 2) a Selection Module for identifying and selecting CRRs of human genes in cell/tissue-specific contexts; and 3) a Design Module for fine-tuning the identified CRRs and modifying transcription factor binding sites within these CRRs in order to modulate the amount of delivered expression.
sj-docx-1-shr-10.1177_20542704221132139 - Supplemental material for Open science and conflict of interest policies of medical and health sciences journals before and during the COVID-19 pandemic: A repeat cross-sectional study
Creators: name: Gardener, Antoni D.
name: Hick, Ellen J.
name: Jacklin, Chloe
name: Tan, Gifford
name: Cashin, Aidan G.
name: Lee, Hopin
name: Nunan, David
name: Toomey, Elaine C.
name: Richards, Georgia C.
Publisher: name: SAGE Journals
Year: 2022
Subjects: Medicine

description: Supplemental material, sj-docx-1-shr-10.1177_20542704221132139 for Open science and conflict of interest policies of medical and health sciences journals before and during the COVID-19 pandemic: A repeat cross-sectional study by Antoni D. Gardener, Ellen J. Hick, Chloe Jacklin, Gifford Tan, Aidan G. Cashin, Hopin Lee, David Nunan, Elaine C. Toomey and Georgia C. Richards in JRSM Open
SOʻFIYLIK TAʼLIMOTI
Creators: name: Sh.Keldiyeva, R.Bahronov
Publisher: name: Zenodo
Year: 2025

description: Annotasiya

Mazkur tadqiqot ishida bugungi kun yosh avlodlarining ma’naviy axloqiy tarbiyasining shakllanishida tasavvuf ilmining ahamiyati to’g’risida va uni amaliyotga tadbiq etish jarayonida “Tasavvuf” va “So’fiy” tushunchalarining qiyosiy tahlilini ochib berish maqsadga muvofiqdir. Tasavvuf ilmining bugungi kundagi ahamiyati va islom olamidagi tariqatlari asosida shakllanishi nuqtai nazaridan tasavvuf va mutasavvif(Sufiy) tushunchalari bo‘yicha mulohazalar keltirilgan va muhokama qilingan.

Аннотация:

 В данном исследовании целесообразно раскрыть значение мистицизма в формировании духовно-нравственного воспитания современного молодого поколения и провести сравнительный анализ понятий «суфизм» и «суфизм» в процессе его применения. Что касается важности мистицизма сегодня и его формирования на основе учений исламского мира, обсуждались концепции мистицизма и суфизма.

 

Abstrac:

 In this research work it is eoʻxpedient to reveal the importance of mysticism in the formation of spiritual and moral education of today's younger generation and a comparative analysis of the concepts of "Sufism" and "Sufi" in the process of its application in practice. In terms of the importance of mysticism today and its formation on the basis of the teachings of the Islamic world, the concepts of mysticism and Sufism have been discussed.

.

Kalit so’zlar: Shariat, ilm, axloq, tarbiya, Tasavvuf, Ibn al-Arabiy,“Fusus ulhikam”, “Futuhot ul-Mak-kiya” Uilyam K.CHittik, Sufiy(mutasavvif), kalom falsafasi, muhaqqiq.

Ключевые слова: шариат, знание, этика, образование, суфизм, Ибн аль-Араби, «Фусус уль-Хикам», «Футухот уль-Мак-кия» Уильям К. Читтик, суфий (мистик), философия теологии, исследователь.

 

 Keywords: Shari'a, knowledge, ethics, education, Sufism, Ibn al-Arabi, "Fusus ul-Hikam", "Futuhot ul-Mak-kiya" William K. Chittik, Sufi (mystic), philosophy of theology, researcher.
Additional file 3 of Mesothelin promotes brain metastasis of non-small cell lung cancer by activating MET
Creators: name: Xia, Shengkai
name: Duan, Wenzhe
name: Xu, Mingxin
name: Li, Mengqi
name: Tang, Mengyi
name: Wei, Song
name: Lin, Manqing
name: Li, Encheng
name: Liu, Wenwen
name: Wang, Qi
Publisher: name: figshare
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Hematology

description: Supplementary Material 3.
sj-docx-2-bmo-10.1177_01454455221129989 – Supplemental material for Acceptance and Compassion-Based Therapy Targeting Shame in Body Dysmorphic Disorder: A Multiple Baseline Study
Creators: name: Linde, Johanna
name: Luoma, Jason B.
name: Rück, Christian
name: Ramnerö, Jonas
name: Lundgren, Tobias
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental material, sj-docx-2-bmo-10.1177_01454455221129989 for Acceptance and Compassion-Based Therapy Targeting Shame in Body Dysmorphic Disorder: A Multiple Baseline Study by Johanna Linde, Jason B. Luoma, Christian Rück, Jonas Ramnerö and Tobias Lundgren in Behavior Modification
Gauge symmetry of unimodular gravity in Hamiltonian formalism
Creators: name: Karataeva, I. Yu.
name: Lyakhovich, S. L.
Publisher: name: arXiv
Year: 2022
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We work out the description of the gauge symmetry of unimodular gravity in the constrained Hamiltonian formalism. In particular, we demonstrate how the transversality conditions restricting the diffeomorphism parameters emerge from the algebra of the Hamiltonian constraints. The alternative form is long known as parametrizing the volume preserving diffeomorphisms by unrestricted two-forms instead of the transverse vector fields. This gauge symmetry is reducible. We work out the Hamiltonian description of this form of unimodular gravity (UG) gauge symmetry. Becchi-Rouet-Stora-Tyutin--Batalin-Fradkin-Vilkovisky (BFV-BRST) Hamiltonian formalism is constructed for both forms of the UG gauge symmetry. These two BRST complexes have a subtle inequivalence: Their BRST cohomology groups are not isomorphic. In particular, for the first complex, which is related to the restricted gauge parameters, the cosmological constant does not correspond to any nontrivial BRST cocycle, while for the alternative complex it does. In the wording of physics, this means $Λ$ is a fixed parameter defined by the field asymptotics rather than the physical observable from the standpoint of the first complex. The second formalism views $Λ$ as the observable with unrestricted initial data.
description: 13 pages, minor corrections, referrence added, to appear in Phys. Rev. D
Are you aware of what you are watching? Role of machine heuristic in online content recommendations
Creators: name: Oh, Soyoung
name: Park, Eunil
Publisher: name: arXiv
Year: 2022
Subjects: subject: Human-Computer Interaction (cs.HC)
subject: FOS: Computer and information sciences

description: Since recommender systems have been created and developed to automate the recommendation process, users can easily consume their desired video content on online platforms. In this line, several content recommendation algorithms are introduced and employed to allow users to encounter content of their interests, effectively. However, the recommendation systems sometimes regrettably recommend inappropriate content, including misinformation or fake news. To make it worse, people would unreservedly accept such content due to their cognitive heuristic, machine heuristic, which is the rule of thumb that machines are more accurate and trustworthy than humans. In this study, we designed and conducted a web-based experiment where the participants are invoked machine heuristic by experiencing the whole process of machine or human recommendation system. The results demonstrated that participants (N = 89) showed a more positive attitude toward a machine recommender than a human recommender, even the recommended videos contain inappropriate content. While participants who have a high level of trust in machines exhibited a negative attitude toward recommendations. Based on these results, we suggest that a phenomenon known as algorithm aversion might be simultaneously considered with machine heuristic in investigating human interaction with a machine.
sj-docx-2-pie-10.1177_09544089221136432 - Supplemental material for Mechanical property and microstructural evaluation of friction stir welded AA8090 T87 aluminium alloy
Creators: name: Shyamlal, Chandrasekaran
name: Rajesh, Shanmugavel
name: Saravana Sankar, Subramaniam
name: Winowlin Jappes, Jebas Thangiah
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 99999 Engineering not elsewhere classified
subject: FOS: Other engineering and technologies
subject: 91299 Materials Engineering not elsewhere classified
subject: FOS: Materials engineering

description: Supplemental material, sj-docx-2-pie-10.1177_09544089221136432 for Mechanical property and microstructural evaluation of friction stir welded AA8090 T87 aluminium alloy by Chandrasekaran Shyamlal, Shanmugavel Rajesh, Subramaniam Saravana Sankar and Jebas Thangiah Winowlin Jappes in Proceedings of the Institution of Mechanical Engineers, Part E: Journal of Process Mechanical Engineering
Domain Representative Keywords Selection: A Probabilistic Approach
Creators: name: Akash, Pritom Saha
name: Huang, Jie
name: Chang, Kevin Chen-Chuan
name: Li, Yunyao
name: Popa, Lucian
name: Zhai, ChengXiang
Publisher: name: arXiv
Year: 2022
Subjects: subject: Computation and Language (cs.CL)
subject: Information Retrieval (cs.IR)
subject: FOS: Computer and information sciences

description: We propose a probabilistic approach to select a subset of a \textit{target domain representative keywords} from a candidate set, contrasting with a context domain. Such a task is crucial for many downstream tasks in natural language processing. To contrast the target domain and the context domain, we adapt the \textit{two-component mixture model} concept to generate a distribution of candidate keywords. It provides more importance to the \textit{distinctive} keywords of the target domain than common keywords contrasting with the context domain. To support the \textit{representativeness} of the selected keywords towards the target domain, we introduce an \textit{optimization algorithm} for selecting the subset from the generated candidate distribution. We have shown that the optimization algorithm can be efficiently implemented with a near-optimal approximation guarantee. Finally, extensive experiments on multiple domains demonstrate the superiority of our approach over other baselines for the tasks of keyword summary generation and trending keywords selection.
Quantum boomerang effect in systems without time reversal symmetry
Creators: name: Janarek, Jakub
name: Grémaud, Benoît
name: Zakrzewski, Jakub
name: Delande, Dominique
Publisher: name: arXiv
Year: 2022
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Quantum Gases (cond-mat.quant-gas)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: In an Anderson localized system, a quantum particle with a nonzero initial velocity returns, on average, to its origin. This recently discovered behavior is known as the quantum boomerang effect. Time reversal invariance was initially thought to be a necessary condition for the existence of this phenomenon. We theoretically analyze the impact of the symmetry breaking on the phenomenon using a one-dimensional system with a spin-orbit coupling and show that the time reversal invariance is not necessary for the boomerang effect to occur.
description: author accepted manuscript in PRB Letters
Additional file 4 of Mesothelin promotes brain metastasis of non-small cell lung cancer by activating MET
Creators: name: Xia, Shengkai
name: Duan, Wenzhe
name: Xu, Mingxin
name: Li, Mengqi
name: Tang, Mengyi
name: Wei, Song
name: Lin, Manqing
name: Li, Encheng
name: Liu, Wenwen
name: Wang, Qi
Publisher: name: figshare
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Hematology

description: Supplementary Material 4.
Genome-based analysis of Carbapenemase-producing Klebsiella pneumoniae isolates from German hospital patients, 2008-2014
Creators: name: Becker, Laura
name: Kaase, Martin
name: Pfeifer, Yvonne
name: Fuchs, Stephan
name: Reuss, Annicka
name: Von Laer, Anja
name: Abu Sin, Muna
name: Korte-Berwanger, Miriam
name: Gatermann, Sören
name: Werner, Guido
Publisher: name: Robert Koch-Institut
Year: 2018
Subjects: subject: KPC
subject: OXA-48
subject: ST258
subject: Hypermucoviscous
subject: Hypervirulent
subject: ST23
subject: K1 capsule
subject: 610 Medizin und Gesundheit

description: Background By using whole genome sequence data we aimed at describing a population snapshot of carbapenemase-producing K. pneumoniae isolated from hospitalized patients in Germany between 2008 and 2014. Methods We selected a representative subset of 107 carbapenemase-producing K. pneumoniae clinical isolates possessing the four most prevalent carbapenemase types in Germany (KPC-2, KPC-3, OXA-48, NDM-1). Isolates were processed via illumina NGS. Data were analysed using different SNP-based mapping and de-novo assembly approaches. Relevant information was extracted from NGS data (antibiotic resistance determinants, wzi gene/cps type, virulence genes). NGS data from the present study were also compared with 238 genome data from two previous international studies on K. pneumoniae. Results NGS-based analyses revealed a preferred prevalence of KPC-2-producing ST258 and KPC-3-producing ST512 isolates. OXA-48, being the most prevalent carbapenemase type in Germany, was associated with various K. pneumoniae strain types; most of them possessing IncL/M plasmid replicons suggesting a preferred dissemination of blaOXA-48 via this well-known plasmid type. Clusters ST15, ST147, ST258, and ST512 demonstrated an intermingled subset structure consisting of German and other European K. pneumoniae isolates. ST23 being the most frequent MLST type in Asia was found only once in Germany. This latter isolate contained an almost complete set of virulence genes and a K1 capsule suggesting occurrence of a hypervirulent ST23 strain producing OXA-48 in Germany. Conclusions Our study results suggest prevalence of “classical” K. pneumonaie strain types associated with widely distributed carbapenemase genes such as ST258/KPC-2 or ST512/KPC-3 also in Germany. The finding of a supposed hypervirulent and OXA-48-producing ST23 K. pneumoniae isolates outside Asia is highly worrisome and requires intense molecular surveillance.
Evarcha Simon 1902
Creators: name: Li, Jian Yong
name: Liu, Jie
name: Chen, Jian
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Salticidae
Evarcha

description: Genus Evarcha Simon, 1902 ǟḵḏŜḁHŔẂ
  Evarcha albaria (L. Koch, 1878) ǟḵḏŜḁHŔ  Ş ♂
­­­­­­­­­­­­­­­ Russia, China, Korea, Japan.
 Hasarius albarius L. Koch 1878: 780.
 Evarcha albaria; Paik and Namkung 1979: 79, Namkung 2001: 559, 2003: 563, Cho and Kim 2002: 94, Kim and Cho 2002: 95, Lee et al. 2004: 99, Kim and Lee 2014: 65.
  Evarcha coreana Seo, 1988 ëĘǟḵḏŜḁHŔ  Ş ♂
­­­­­­­­­­­­­­­ China, Korea.
 Evarcha coreana Seo 1988b: 91, Namkung 2001: 560, 2003: 564, Cho and Kim 2002: 95, Kim and Lee 2014: 66.
  Evarcha fasciata Seo, 1992 ẃǟḵḏŜḁHŔ  Ş ♂
­­­­­­­­­­­­­­­ China, Korea, Japan.
 Evarcha fasciata Seo 1992a: 160, Namkung 2001: 561, 2003: 565, Cho and Kim 2002: 95, Kim and Cho 2002: 96, Kim and Lee 2014: 67.
  Evarcha proszynskii Marusik and Logunov, 1998 ǟģŜḁHŔ  Ş ♂
­­­­­­­­­­­­­­­ Russia to Japan, USA, Canada.
 Evarcha proszynskii Marusik and Logunov 1998: 101, Namkung 2001: 562, 2003: 566, Kim and Lee 2014: 68.
description: Published as part of Li, Jian Yong, Liu, Jie & Chen, Jian, 2015, Bibliographic checklist of Korean spiders (Arachnida: Araneae) ver. 2015, pp. 1-112 in Journal of Species Research 4 on page 87, DOI: 10.12651/JSR.2015.4, http://zenodo.org/record/13137482
Additional file 5 of Mesothelin promotes brain metastasis of non-small cell lung cancer by activating MET
Creators: name: Xia, Shengkai
name: Duan, Wenzhe
name: Xu, Mingxin
name: Li, Mengqi
name: Tang, Mengyi
name: Wei, Song
name: Lin, Manqing
name: Li, Encheng
name: Liu, Wenwen
name: Wang, Qi
Publisher: name: figshare
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Hematology

description: Supplementary Material 5.
Vision-and-Language Navigation: A Survey of Tasks, Methods, and Future Directions
Creators: name: Gu, Jing
name: Stefani, Eliana
name: Wu, Qi
name: Thomason, Jesse
name: Wang, Xin Eric
Publisher: name: arXiv
Year: 2022
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Artificial Intelligence (cs.AI)
subject: Computation and Language (cs.CL)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: A long-term goal of AI research is to build intelligent agents that can communicate with humans in natural language, perceive the environment, and perform real-world tasks. Vision-and-Language Navigation (VLN) is a fundamental and interdisciplinary research topic towards this goal, and receives increasing attention from natural language processing, computer vision, robotics, and machine learning communities. In this paper, we review contemporary studies in the emerging field of VLN, covering tasks, evaluation metrics, methods, etc. Through structured analysis of current progress and challenges, we highlight the limitations of current VLN and opportunities for future work. This paper serves as a thorough reference for the VLN research community.
description: 19 pages. Accepted to ACL 2022
ИСПОЛЬЗОВАНИЕ ПАРАМЕТРА «ПОВРЕЖДЕНИЕ ЗЕРНА РИСА В ПОЛЕВЫХ УСЛОВИЯХ В ВИДЕ
ТЕМНЫХ ПЯТЕН» В СЕЛЕКЦИОННОМ ПРОЦЕССЕ
Creators: name: Т.Б. Кумейко, Н.Г. Туманьян, Э.Ю. Папулова
Publisher: name: Северо-Кавказский федеральный научный аграрный центр
Year: 2018

description: В селекционном процессе создания сортов риса по результатам оценки исходного материала ведется отбор ценных образцов (в рабочей коллекции, в контрольных и питомниках конкурсного сортоиспытания). В ФГБНУ «ВНИИ риса» изучают действие энтомофауны на устойчивость к повреждению зерна в виде темных пятен. Проведена оценка образцов конкурсного сортоиспытания, выращенных в 2015-2017 гг. на ОПУ ВНИИ риса, п. Белозерный, г. Краснодар. Выделены наиболее подверженные повреждению образцы. Степень повреждения зерна риса в виде темных пятен у сортообразцов находилась в пределах 0,0-2,0 %. В погодных условиях 2016 г. не отмечено значительного повреждения зерновок.
Ключевые слова: рис, селекционный
Additional file 1 of GSH-responsive degradable nanodrug for glucose metabolism intervention and induction of ferroptosis to enhance magnetothermal anti-tumor therapy
Creators: name: Liao, Zhen
name: Wen, E.
name: Feng, Yi
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Cancer

description: Additional file 1: Figure S1. Representative TEM images of LFMP. Figure S2. T2-weighted MR imaging (A) and transverse relaxivity (r2) of LFMP was examined by a clinical 3.0 T MR imaging device with a T2 mapping sequence (B). The quantitative assay was performed by measuring the intensity of MR images using ImageJ software (C). Data shown as mean ± SD, n = 5, **p < 0.01, ***p < 0.001. Figure S3. Biocompatibility of different concentrations of LFMP in blood for 4 h. H2O as positive control, 0.9% NaCl as negative control. Figure S4. Representative TEM images of biodegradation behavior of LFMP in PBS solution ([GSH] = 10 mM) for 10 days (scale bar = 50 μm). Figure S5. Half-maximal inhibitory concentration (IC50) of LND (A), FMP (B), FMP + AMF (B), LFMP (C), and LFMP + AMF(C) in EMT-6 cells. The data are presented as the mean ± SD, n = 6. Figure S6. Combination index plot for drug combination of LND and FMP. Figure S7. TUNEL staining and the corresponding proportion of TUNEL positive cells of tumor sections after the survival experiment (Scale bar = 100 μm). The data was shown as mean ± SD, n = 6 per group, ***p < 0.001. Figure S8. Blood biochemical indexes and hematology parameters of the mice with different treatments. The data are presented as the mean ± SD, n = 6. Table S1. Physicochemical properties of FM and LFMP. Table S2. Hydrodynamic diameter distributions and Zeta potential of LFMP in different solutions. Data are presented as mean ± SD, n = 6.
Mokey: Enabling Narrow Fixed-Point Inference for Out-of-the-Box Floating-Point Transformer Models
Creators: name: Zadeh, Ali Hadi
name: Mahmoud, Mostafa
name: Abdelhadi, Ameer
name: Moshovos, Andreas
Publisher: name: arXiv
Year: 2022
Subjects: subject: Machine Learning (cs.LG)
subject: Hardware Architecture (cs.AR)
subject: FOS: Computer and information sciences

description: Increasingly larger and better Transformer models keep advancing state-of-the-art accuracy and capability for Natural Language Processing applications. These models demand more computational power, storage, and energy. Mokey reduces the footprint of state-of-the-art 32-bit or 16-bit floating-point transformer models by quantizing all values to 4-bit indexes into dictionaries of representative 16-bit fixed-point centroids. Mokey does not need fine-tuning, an essential feature as often the training resources or datasets are not available to many. Exploiting the range of values that naturally occur in transformer models, Mokey selects centroid values to also fit an exponential curve. This unique feature enables Mokey to replace the bulk of the original multiply-accumulate operations with narrow 3b fixed-point additions resulting in an area- and energy-efficient hardware accelerator design. Over a set of state-of-the-art transformer models, the Mokey accelerator delivers an order of magnitude improvements in energy efficiency over a Tensor Cores-based accelerator while improving performance by at least $4\times$ and as much as $15\times$ depending on the model and on-chip buffering capacity. Optionally, Mokey can be used as a memory compression assist for any other accelerator, transparently stashing wide floating-point or fixed-point activations or weights into narrow 4-bit indexes. Mokey proves superior to prior state-of-the-art quantization methods for Transformers.
description: Accepted at the 49th IEEE/ACM International Symposium on Computer Architecture (ISCA '22)
ВЛИЯНИЕ МИНЕРАЛЬНЫХ УДОБРЕНИЙ НА УРОЖАЙНОСТЬ ЗЕРНА ЯРОВОГО ЯЧМЕНЯ НА РАЗЛИЧНЫХ ТАКСОНАХ «АГРОЛАНДШАФТА»
Creators: name: Н.С. Лебедева, Е.Н. Общия
Publisher: name: Северо-Кавказский федеральный научный аграрный центр
Year: 2018

description: Ячмень занимает одно из важнейших мест в стране по скармливанию животным. Зерно ячменя имеет значительно лучший химический состав по сравнению с другими зернофуражными культурами.
Мы изучили в зоне неустойчивого увлажнения на территории полигона «Агроландшафт» влияние минеральных удобрений и плодородие почв на урожайность ярового ячменя. Почвы полигона по содержанию гумуса были не однородны, количество варьировало от 2,7% (окраина плакора) до 3,9% (коренной склон).
Сорт ярового ячменя Гетьман в год проведения исследования проявил себя хорошо, отзывчив на плодородие почвы и внесение минеральных удобрений. Гетьман сформировал урожай в среднем на контроле-36,5 ц/га, с удобрением-45,1 ц/га.
sj-docx-1-mrx-10.1177_01979183221127296 - Supplemental material for With Time We Learn to Trust Others? Long-Standing Ethnic Diversity, Recent Immigration, and Out-Group Trust in Russia
Creators: name: Brunarska, Zuzanna
name: Toruńczyk-Ruiz, Sabina
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 160607 International Relations
subject: FOS: Political science

description: Supplemental material, sj-docx-1-mrx-10.1177_01979183221127296 for With Time We Learn to Trust Others? Long-Standing Ethnic Diversity, Recent Immigration, and Out-Group Trust in Russia by Zuzanna Brunarska and Sabina Toruńczyk-Ruiz in International Migration Review
Effect of relativity and vacuum fluctuations on quantum measurement
Creators: name: Bednorz, Adam
name: Belzig, Wolfgang
Publisher: name: arXiv
Year: 2022
Subjects: subject: Quantum Physics (quant-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Vacuum fluctuations can obscure the detection signal of the measurement of the smallest quantum objects like single particles seemingly implying a fundamental limit to measurement accuracy. However, as we show relativistic invariance implies the disappearance of fluctuations for the space-like spectrum of an observable at zero temperature. This complete absence of noise can be harnessed to perform noiseless measurement of single particles, as we illustrate for electrons or photons. We outline a general scheme to illustrate the noiseless measurement involving the space-like spectrum of observables based on the self-interference of counter-propagating paths of a single particle in a triangular Sagnac interferometer.
description: 15 pages, 7 figures
Additional file 1 of Quercetin inhibition of porcine intestinal alpha coronavirus in vitro and in vivo
Creators: name: Feng, Yongzhi
name: Yi, Heyou
name: Zheng, Xiaoyu
name: Liu, Xing
name: Gong, Ting
name: Wu, Dongdong
name: Song, Zebu
name: Zheng, Zezhong
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Supplementary Material 1
sj-pdf-1-whe-10.1177_17455057221133835 – Supplemental material for Level and predictors of breast cancer awareness among Saudi women: A nationwide study
Creators: name: Qedair, Jumanah T
name: Al Qurashi, Abdullah A
name: Alfayea, Turki
name: Mortada, Hatan
name: Alsudais, Ali
name: Almuntashiri, Saleh
name: Hakami, Alqassem Y
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 111402 Obstetrics and Gynaecology
subject: FOS: Clinical medicine

description: Supplemental material, sj-pdf-1-whe-10.1177_17455057221133835 for Level and predictors of breast cancer awareness among Saudi women: A nationwide study by Jumanah T Qedair, Abdullah A Al Qurashi, Turki Alfayea, Hatan Mortada, Ali Alsudais, Saleh Almuntashiri and Alqassem Y Hakami in Women’s Health
sj-docx-1-smm-10.1177_09622802221137743 - Supplemental material for Use of clinical tolerance limits for assessing agreement
Creators: name: Patrick, Taffé
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 111708 Health and Community Services
subject: FOS: Health sciences
subject: 111099 Nursing not elsewhere classified
subject: 160807 Sociological Methodology and Research Methods
subject: FOS: Sociology

description: Supplemental material, sj-docx-1-smm-10.1177_09622802221137743 for Use of clinical tolerance limits for assessing agreement by Taffé Patrick in Statistical Methods in Medical Research
sj-docx-1-crx-10.1177_00936502221113812 – Supplemental material for Appraising Uncivil Comments in Online Political Discussions: How Do Preceding Incivility and Senders’ Stance Affect the Processing of an Uncivil Comment?
Creators: name: Kluck, Jan P.
name: Krämer, Nicole C.
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 200199 Communication and Media Studies not elsewhere classified
subject: FOS: Media and communications

description: Supplemental material, sj-docx-1-crx-10.1177_00936502221113812 for Appraising Uncivil Comments in Online Political Discussions: How Do Preceding Incivility and Senders’ Stance Affect the Processing of an Uncivil Comment? by Jan P. Kluck and Nicole C. Krämer in Communication Research
sj-pdf-1-bmo-10.1177_01454455221129993 – Supplemental material for The Effect of Schedule Thinning on Student Behavior During the Caught Being Good Game
Creators: name: Bohan, Clare
name: Smyth, Sinéad
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental material, sj-pdf-1-bmo-10.1177_01454455221129993 for The Effect of Schedule Thinning on Student Behavior During the Caught Being Good Game by Clare Bohan and Sinéad Smyth in Behavior Modification
sj-docx-1-pfr-10.1177_10911421221137426 - Supplemental material for Effect of International Commodity Price Shocks on Public Finances in Africa
Creators: name: Da, Dakpoulé
name: Diarra, Mahamadou
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: Economics
subject: 150310 Organisation and Management Theory
subject: FOS: Economics and business

description: Supplemental material, sj-docx-1-pfr-10.1177_10911421221137426 for Effect of International Commodity Price Shocks on Public Finances in Africa by Dakpoulé Da and Mahamadou Diarra in Public Finance Review
Additional file 2 of Quercetin inhibition of porcine intestinal alpha coronavirus in vitro and in vivo
Creators: name: Feng, Yongzhi
name: Yi, Heyou
name: Zheng, Xiaoyu
name: Liu, Xing
name: Gong, Ting
name: Wu, Dongdong
name: Song, Zebu
name: Zheng, Zezhong
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Supplementary Material 2
sj-docx-1-bmi-10.1177_11772719221137608 – Supplemental material for Evaluation of Genetic Polymorphisms of the Antioxidant Enzymes and Biomarkers of Oxidative Stress in Preterm Neonates With Respiratory Distress Syndrome Receiving External Surfactant
Creators: name: Sridharan, Kannan
name: Al Jufairi, Mona
name: Hejab, Aamal AbdulGhani Mahdi
name: Al Madhoob, Abdulraoof
name: Al Marzooq, Reem
name: Taha, Safa
name: Jaber Mulla Aljishi, Muna
name: Abdulhadi, Ameera
name: Al Ansari, Eman
name: Ali, Masooma Abdulla
name: Naser, Maryam Ali Ahmed
name: Al Segai, Ola
name: Dunne, Kevin
Publisher: name: SAGE Journals
Year: 2022
Subjects: Biochemistry

description: Supplemental material, sj-docx-1-bmi-10.1177_11772719221137608 for Evaluation of Genetic Polymorphisms of the Antioxidant Enzymes and Biomarkers of Oxidative Stress in Preterm Neonates With Respiratory Distress Syndrome Receiving External Surfactant by Kannan Sridharan, Mona Al Jufairi, Aamal AbdulGhani Mahdi Hejab, Abdulraoof Al Madhoob, Reem Al Marzooq, Safa Taha, Muna Jaber Mulla Aljishi, Ameera Abdulhadi, Eman Al Ansari, Masooma Abdulla Ali, Maryam Ali Ahmed Naser, Ola Al Segai and Kevin Dunne in Biomarker Insights
Smart variant filtering
Creators: name: Kovacevic, Vladimir
Publisher: name: F1000 Research Limited
Year: 2018

description: Variant filtering consists of preserving highly confident variants and removing falsely called variants. Secondary genomic DNA analysis is mainly oriented toward alignment and variant calling because these two processes strongly influence overall quality. Previously, the variant filtering step was mostly overlooked or analyzed only in deeper testing. However, variant filtering can boost precision of variant calls substantially.
Here, we created a Smart Variant Filtering (SVF) framework. Conceptually, the SVF framework has three phases: (i) selecting a locally-optimal machine learning algorithm configuration for the Genome In A Bottle variant-called samples (HG001-HG005); (ii) learning parameters for that configuration with a training set; (iii) using learned parameters to perform variant filtering on novel datasets. SVF is available on Github (https://github.com/sbg/smart-variant-filtering) and also as a Public project (https://igor.sbgenomics.com/u/sevenbridges/smart-variant-filtering) on the Seven Bridges Platform. It is open-sourced and free to use by any party (BSD-3 license).
Phase (i) included brute-force testing across 372 different algorithm and parameter configurations. It included 10-fold, automatitized cross-validation using 123,000 variants. Based on these results we selected a locally optimal classifier and configuration (Multi Layer Perceptron with 250 nodes in the hidden layer). Phase (ii) trained the network selected in the prior phase with 25 million variants to learn the network weights (model) to be applied in Phase (iii).
We will show results from deep, 3-stage testing to demonstrate that SVF  outperforms standard variant filtering solutions currently used within most secondary DNA analyses. Smart Variant Filtering increases the precision of called SNVs (removes false positives) for up to 0.2% while keeping the overall f-score higher by 0.12-0.27% than in existing solutions. Indel precision is increased by up to 7.8%, while the f-score increase is in range of 0.1 to 3.2%.
sj-pdf-1-wes-10.1177_09500170221128692 – Supplemental material for Participation in Job-Related Training: Is There a Parenthood Training Penalty?
Creators: name: Zoch, Gundula
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 150310 Organisation and Management Theory
subject: FOS: Economics and business
subject: Sociology
subject: FOS: Sociology

description: Supplemental material, sj-pdf-1-wes-10.1177_09500170221128692 for Participation in Job-Related Training: Is There a Parenthood Training Penalty? by Gundula Zoch in Work, Employment and Society
Germline variant calling using the seven bridges graph toolkit (SBGT)
Creators: name: H. Serhat Tetikol
name: Kovacevic, Vladimir
name: Ozem Kalay
name: Locke, Devin
Publisher: name: F1000 Research Limited
Year: 2018

description: The human reference genome lays the basis for genomic analyses by enabling alignment of sequenced reads. However, the linear human reference genome released by the Genome Reference Consortium only represents a single consensus haplotype, and therefore constitutes a suboptimal representation of human genetic variation. Directed acyclic graph reference genome representations that incorporate information on genetic variation have been shown to improve the accuracy of read alignment, variant calling and other subsequent genomic analyses. A set of bioinformatics tools utilizing graph genomes (Seven Bridges Graph Toolkit; SBGT) for the analysis of next-generation sequencing (NGS) data has recently been published by Seven Bridges in preprint*. In this study, we benchmark the SBGT pipeline on germline variant calling and compare it against other state-of-the-art whole genome pipelines, namely BWA-MEM + GATK4 by the Broad Institute. The analysis includes five whole-genome samples (HG001-HG005) with the truth data established by the Genome in a Bottle Consortium. The results show that the SBGT pipeline has the highest accuracy in small (<50bp) INDEL calling with an F1-score of 0.25% above the average, while scoring 0.06% above the average in SNP calling. Moreover, we show that, unlike the other pipelines, the SBGT pipeline is capable of finding INDELs as long as several kilobases without any additional processing steps. The Mendelian inheritance discordance measurements on CEPH/CEU and Ashkenazim trios demonstrate that the SBGT pipeline offers the most consistent germline variant calling with a score that is 1-2 percentage points better than the other pipelines. Finally, we present an optimized version of the SBGT pipeline that can process a whole-genome sample with 30x coverage on the cloud in 2 hours and under $5.
Additional file 1 of Quercetin inhibition of porcine intestinal alpha coronavirus in vitro and in vivo
Creators: name: Feng, Yongzhi
name: Yi, Heyou
name: Zheng, Xiaoyu
name: Liu, Xing
name: Gong, Ting
name: Wu, Dongdong
name: Song, Zebu
name: Zheng, Zezhong
name: Peng, Qin
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Supplementary Material 1
sj-docx-1-cpc-10.1177_10556656211051222 - Supplemental material for Psychosocial Experiences That Support Positive Self-Concept in Children with Cleft Lip and Palate Adopted From China
Creators: name: Everhart, S. A.
name: Cochran, K. M.
name: Lambrou, N. H.
name: Davies, W. H.
name: Marik, P. K.
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 110323 Surgery
subject: FOS: Clinical medicine

description: Supplemental material, sj-docx-1-cpc-10.1177_10556656211051222 for Psychosocial Experiences That Support Positive Self-Concept in Children with Cleft Lip and Palate Adopted From China by S. A. Everhart, K. M. Cochran, N. H. Lambrou, W. H. Davies, and P. K. Marik in The Cleft Palate-Craniofacial Journal
Evolving Programmable Computational Metamaterials
Creators: name: Parsa, Atoosa
name: Wang, Dong
name: O'Hern, Corey S.
name: Shattuck, Mark D.
name: Kramer-Bottiglio, Rebecca
name: Bongard, Josh
Publisher: name: arXiv
Year: 2022
Subjects: subject: Emerging Technologies (cs.ET)
subject: Neural and Evolutionary Computing (cs.NE)
subject: FOS: Computer and information sciences

description: Granular metamaterials are a promising choice for the realization of mechanical computing devices. As preliminary evidence of this, we demonstrate here how to embed Boolean logic gates (AND and XOR) into a granular metamaterial by evolving where particular grains are placed in the material. Our results confirm the existence of gradients of increasing "AND-ness" and "XOR-ness" within the space of possible materials that can be followed by evolutionary search. We measure the computational functionality of a material by probing how it transforms bits encoded as vibrations with zero or non-zero amplitude. We compared the evolution of materials built from mass-contrasting particles and materials built from stiffness-contrasting particles, and found that the latter were more evolvable. We believe this work may pave the way toward evolutionary design of increasingly sophisticated, programmable, and computationally dense metamaterials with certain advantages over more traditional computational substrates.
description: Accepted to the Genetic and Evolutionary Computation Conference 2022 (GECCO '22)
sj-pdf-1-vdi-10.1177_10406387221135184 – Supplemental material for Improved molecular detection of Neorickettsia risticii with a duplex real-time PCR assay in the diagnosis of Potomac horse fever
Creators: name: Thirumalapura, Nagaraja R.
name: Livengood, Julia
name: Beeby, John
name: Wang, Weihua
name: Goodrich, Erin L.
name: Goodman, Laura B.
name: Erol, Erdal
name: Tewari, Deepanker
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: FOS: Clinical medicine
subject: 70706 Veterinary Medicine
subject: FOS: Veterinary sciences

description: Supplemental material, sj-pdf-1-vdi-10.1177_10406387221135184 for Improved molecular detection of Neorickettsia risticii with a duplex real-time PCR assay in the diagnosis of Potomac horse fever by Nagaraja R. Thirumalapura, Julia Livengood, John Beeby, Weihua Wang, Erin L. Goodrich, Laura B. Goodman, Erdal Erol and Deepanker Tewari in Journal of Veterinary Diagnostic Investigation
GRB 210121A: Observation of photospheric emissions from different regimes and the evolution of the outflow
Creators: name: Song, Xin-Ying
name: Zhang, Shuang-Nan
name: Zhang, Shu
name: Xiong, Shao-Lin
name: Song, Li-Ming
Publisher: name: arXiv
Year: 2022
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: GRB 210121A was observed by Insight-HXMT, Gravitational wave high-energy Electromagnetic Counterpart All-sky Monitor (GECAM), Fermi Gamma-ray Burst Monitor (Fermi/GBM) on Jan 21st 2021. In this work, photospheric emission from a structured jet is preferred to interpret the prompt emission phase of GRB 210121A and emissions from different regimes are observed on-axis. Particularly, the emission from the intermediate photosphere is first observed in the first 1.3 s of the prompt emission, while those from the other part are dominant by the saturated regime, and offers an alternative explanation compared with the previous work. Moreover, the emissions with considering the intermediate photosphere can well interpret the changes on low-energy photon index $α$ during the pulses. Besides, the evolution of the outflow is extracted from time-resolved analysis, and a correlation of $Γ_0 \propto L^{0.25\pm0.05}_0$ is obtained, which implies that the jet may be mainly launched by neutrino annihilation in a hyper-accretion disk.
description: 10 pages, 4 figures, published The ApJ, 931:112 (7pp), 2022 June 1
sj-docx-5-pie-10.1177_09544089221136813 - Supplemental material for Mechanical characterization of kenaf/glass fibre hybrid composite laminates: An experimental and numerical approach
Creators: name: Mohapatra, Deepak K
name: Deo, Chitta R
name: Mishra, Punyapriya
name: Ekka, Kiran K
name: Mishra, Chandrakanta
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 99999 Engineering not elsewhere classified
subject: FOS: Other engineering and technologies
subject: 91299 Materials Engineering not elsewhere classified
subject: FOS: Materials engineering

description: Supplemental material, sj-docx-5-pie-10.1177_09544089221136813 for Mechanical characterization of kenaf/glass fibre hybrid composite laminates: An experimental and numerical approach by Deepak K Mohapatra, Chitta R Deo, Punyapriya Mishra and Kiran K Ekka, Chandrakanta Mishra in Proceedings of the Institution of Mechanical Engineers, Part E: Journal of Process Mechanical Engineering
sj-docx-1-pie-10.1177_09544089221136432 - Supplemental material for Mechanical property and microstructural evaluation of friction stir welded AA8090 T87 aluminium alloy
Creators: name: Shyamlal, Chandrasekaran
name: Rajesh, Shanmugavel
name: Saravana Sankar, Subramaniam
name: Winowlin Jappes, Jebas Thangiah
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 99999 Engineering not elsewhere classified
subject: FOS: Other engineering and technologies
subject: 91299 Materials Engineering not elsewhere classified
subject: FOS: Materials engineering

description: Supplemental material, sj-docx-1-pie-10.1177_09544089221136432 for Mechanical property and microstructural evaluation of friction stir welded AA8090 T87 aluminium alloy by Chandrasekaran Shyamlal, Shanmugavel Rajesh, Subramaniam Saravana Sankar and Jebas Thangiah Winowlin Jappes in Proceedings of the Institution of Mechanical Engineers, Part E: Journal of Process Mechanical Engineering
Heliophanus C. L. Koch 1833
Creators: name: Li, Jian Yong
name: Liu, Jie
name: Chen, Jian
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Salticidae
Heliophanus

description: Genus Heliophanus C.L. Koch, 1833 Ȓ님ŜḁHŔẂ
  Heliophanus lineiventris Simon, 1868 ẃșLjȒ님ŜḁHŔ  Ş ♂
­­­­­­­­­­­­­­­ Palearctic.
 Heliophanus lineiventris Simon 1868: 688, Paik 1987: 6, Seo 1999b: 59, Namkung 2001: 595, 2003: 599, Kim and Lee 2014: 78.
  Heliophanus ussuricus Kulczyński, 1895 우÷ƞȒ님ŜḁHŔ  Ş ♂
­­­­­­­­­­­­­­­ Russia, Mongolia, China, Korea, Japan.
 Heliophanus ussuricus Kulczyński 1895b: 51, Paik 1985g: 46, 1987: 8, Namkung 2001: 596, 2003: 600, Cho and Kim 2002: 101, Kim and Cho 2002: 106, Kim and Lee 2014: 80.
description: Published as part of Li, Jian Yong, Liu, Jie & Chen, Jian, 2015, Bibliographic checklist of Korean spiders (Arachnida: Araneae) ver. 2015, pp. 1-112 in Journal of Species Research 4 on page 88, DOI: 10.12651/JSR.2015.4, http://zenodo.org/record/13137482
sj-docx-1-pie-10.1177_09544089221136692 - Supplemental material for Magnetohydrodynamic stagnation point flow and heat transfer effects of Al2O3-Cu/water hybrid nanofluid over a porous stretching surface
Creators: name: Mathews, Joel
name: Hymavathi, T
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 99999 Engineering not elsewhere classified
subject: FOS: Other engineering and technologies
subject: 91299 Materials Engineering not elsewhere classified
subject: FOS: Materials engineering

description: Supplemental material, sj-docx-1-pie-10.1177_09544089221136692 for Magnetohydrodynamic stagnation point flow and heat transfer effects of Al2O3-Cu/water hybrid nanofluid over a porous stretching surface by Joel Mathews and T Hymavathi in Proceedings of the Institution of Mechanical Engineers, Part E: Journal of Process Mechanical Engineering
sj-docx-1-jiv-10.1177_08862605221135143 – Supplemental material for Assessing Racial Disparities in Homicide Sentencing: Findings From Brazil
Creators: name: Testa, Alexander
name: Santos, Mateus Rennó
name: Ribeiro, Ludmila
name: Hartley, Richard
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 160299 Criminology not elsewhere classified
subject: FOS: Law

description: Supplemental material, sj-docx-1-jiv-10.1177_08862605221135143 for Assessing Racial Disparities in Homicide Sentencing: Findings From Brazil by Alexander Testa, Mateus Rennó Santos, Ludmila Ribeiro and Richard Hartley in Journal of Interpersonal Violence
Supplemental Material - The relationships between neuroglial and neuronal changes in Alzheimer’s disease, and related controversies
Creators: name: Toledano-Díaz, Adolfo
name: Álvarez, M Isabel
name: Toledano, Adolfo
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine

description: Supplemental Material for The relationships between neuroglial and neuronal changes in Alzheimer’s disease, and related controversies by Adolfo Toledano-Díaz, M Isabel Álvarez and Adolfo Toledano in Journal of Central Nervous System Disease