cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Placusa tachyporoides
Creators: name: Klimaszewski, Jan
name: Chandler, Donald S.
name: Davies, Anthony
name: Bourdon, Caroline
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Placusa
Placusa tachyporoides

description: 241. Placusa tachyporoides (Waltl) †
(Illustrations in Klimaszewski et al. 2001, 2018), Table 1
References. Waltl 1838. Klimaszewski et al. 2001, 2007, 2015a, 2016e, 2018, 2020, 2021. Majka and Klimaszewski 2008. Webster et al. 2022b.
Distribution. Palearctic, adventive in North America, recorded from A/S (Klimaszewski et al. 2021). Canada: AB, BC, LB, NB, NS, ON, PE, QC, SK. USA: AK, CA, MA, ME (NSR), MN, NH (NSR).
Collection and Habitat data. A ME female was found on an oak log in September, and a NH female was attracted to a black light in June. In AK specimens were found in a Picea glauca forest and on a dried carcass (Klimaszewski et al. 2021). In Canada found in sugar maple, yellow birch, balsam fir, black spruce, mixed trembling aspen, white spruce, and white pine stands; in NB collected by Lindgren funnel traps in an old-growth northern hardwood forest, a red oak forest, an old jack pine forest, and in a rich Appalachian hardwood forest. In Europe found in Acer, Alnus, Betula, Carpinus, Fagus, Populus, Quercus, Ulmus, Sorbus, and coniferous forests. Two individuals from NB were sifted from a pile of fairly fresh corncobs and cornhusks (Klimaszewski et al. 2021).
Material. USA, Maine, Kennebec Co.: Augusta, 11.IX.1943, A.E. Brower, on oak log, 1 female. New Hampshire, Grafton Co.: Waterville, 10.VI.1974, black light trap, 1 female.
description: Published as part of Klimaszewski, Jan, Chandler, Donald S., Davies, Anthony & Bourdon, Caroline, 2023, Aleocharine rove beetles of New Hampshire, USA: new taxa and new records (Coleoptera, Staphylinidae, Aleocharinae), pp. 1-141 in Zootaxa 5364 (1) on pages 112-113, DOI: 10.11646/zootaxa.5364.1.1, http://zenodo.org/record/10145460
Additional file 1: of Dyspnea, a high-risk symptom in patients suspected of myocardial infarction in the ambulance? A population-based follow-up study
Creators: name: Bøtker, Morten
name: Stengaard, Carsten
name: Andersen, Mikkel
name: Søndergaard, Hanne
name: Dodt, Karen
name: Niemann, Troels
name: Kirkegaard, Hans
name: Christensen, Erika
name: Terkelsen, Christian
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Computational Biology

description: The ICD-10 diagnosis algorithm. (PDF 38 kb)
Additional file 3: of Genetic diversity of Culex pipiens mosquitoes in distinct populations from Europe: contribution of Cx. quinquefasciatus in Mediterranean populations
Creators: name: Shaikevich, Elena
name: Vinogradova, Elena
name: Bouattour, Ali
name: Almeida, António Gouveia De
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Developmental Biology
subject: Marine Biology
subject: 60506 Virology
subject: Computational Biology

description: Alignments of ace-2 gene sequences for Cx. pipiens/quinquefasciatus hybrid collected from Kos, Greece. Sequences are compared with Cx. pipiens (AY196910) and Cx. quinquefasciatus (AY196911).“*” Indicates the absence of mutation, “.” - nucleotide substitutions, “-” indels. (DOCX 12 kb)
Additional file 1: Figure S1. of Genome-wide identification and expression analysis of the ClTCP transcription factors in Citrullus lanatus
Creators: name: Pibiao Shi
name: Kateta Guy
name: Weifang Wu
name: Bingsheng Fang
name: Jinghua Yang
name: Mingfang Zhang
name: Zhongyuan Hu
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Alignment of the predicted amino acid sequences for members of the watermelon TCP family. (PDF 3445 kb)
Pachygnatha procincta Bosmans & Bosselaers 1994
Creators: name: Nzigidahera, Benoît
name: Jocqué, Rudy
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Tetragnathidae
Pachygnatha
Pachygnatha procincta

description: Pachygnatha procincta Bosmans & Bosselaers, 1994
Fig. 6
Material examined
BURUNDI: 1 ♂, Kibira National Park, Rwegura, Mt. Musumba, 02.86°S 29.50°E, site 7, tea plantation, 10 Dec. 2008, 2100 m, B. Nzigidahera (MRAC 226772).
Remarks
The specimen was compared to the holotype from Cameroon (MRAC 202728) and to the specimens from two localities in Kenya (MRAC 111873, MRAC 112015), that were attributed to the same species by Bosmans & Bosselaers (1994). Reexamination confirms the close resemblance between all these specimens in which the males are characterized by the shape of the paracymbium. This sclerite has a very typical comma shaped bald retrolateral area. The cheliceral dentition of the specimens is virtually identical. The Burundian specimen has a slightly different colouration in the sense that it is paler and less orange than the other specimens. The presently known distribution is shown in Fig. 6.
description: Published as part of Nzigidahera, Benoît & Jocqué, Rudy, 2014, On the genus Pachygnatha (Araneae, Tetragnathidae) in the Albertine Rift of Burundi, with the description of three new species, pp. 1-16 in European Journal of Taxonomy 93 on page 14, DOI: 10.5852/ejt.2014.93, http://zenodo.org/record/830654
Placusa tacomae Casey 1893
Creators: name: Klimaszewski, Jan
name: Chandler, Donald S.
name: Davies, Anthony
name: Bourdon, Caroline
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Placusa
Placusa tacomae

description: 242. Placusa tacomae Casey
(Illustrations in Klimaszewski et al. 2018), Table 1
References. Casey 1893. Hatch 1957. Klimaszewski et al. 2001, 2011, 2016e, 2018, 2020, 2021. Webster et al. 2009. Majka et al. 2011.
Distribution. Nearctic, recorded from A/S (Klimaszewski et al. 2021). Canada: AB, BC, NB, NF, NS, NT, ON, QC, SK, YT. USA: AK, AZ, CO, MA, ME, MN, NH (NSR), NY, VA, WA.
Collection and Habitat data. Habitat for NH specimen not indicated; collecting date in July. In AK captured in various coniferous forests, some clearcut, and shrubby habitats such as rose and willow (Klimaszewski et al. 2021). In Canada recorded from various hardwood and coniferous forests (Webster et al. 2009). Adults found under bark of conifers: under bark of fire-killed red pine under bark of red spruce infested with D. rufipennis and P. rufipennis (NB), in bark of log pile of Pinus contorta; in galleries of Dendroctonus ponderosae and Ips pini (AB); collected in bark of Pinus contorta Dougl. ex Loud. (BC) (Webster et al. 2009, Majka et al. 2011, Klimaszewski et al. 2021).
Material. USA, New Hampshire, Lee, 16.VII.1965, 1 female.
description: Published as part of Klimaszewski, Jan, Chandler, Donald S., Davies, Anthony & Bourdon, Caroline, 2023, Aleocharine rove beetles of New Hampshire, USA: new taxa and new records (Coleoptera, Staphylinidae, Aleocharinae), pp. 1-141 in Zootaxa 5364 (1) on page 113, DOI: 10.11646/zootaxa.5364.1.1, http://zenodo.org/record/10145460
Supervised machine learning for email thread summarization
Creators: name: Ulrich, Jan
Publisher: name: University of British Columbia
Year: 2008

description: Email has become a part of most people's lives, and the ever increasing amount of messages people receive can lead to email overload. We attempt to mitigate this problem using email thread summarization. Summaries can be used for things other than just replacing an incoming email message. They can be used in the business world as a form of corporate memory, or to allow a new team member an easy way to catch up on an ongoing conversation. Email threads are of particular interest to summarization because they contain much structural redundancy due to their conversational nature. Our email thread summarization approach uses machine learning to pick which sentences from the email thread to use in the summary. A machine learning summarizer must be trained using previously labeled data, i.e. manually created summaries. After being trained our summarization algorithm can generate summaries that on average contain over 70% of the same sentences as human annotators. We show that labeling some key features such as speech acts, meta sentences, and subjectivity can improve performance to over 80% weighted recall. To create such email summarization software, an email dataset is needed for training and evaluation. Since email communication is a private matter, it is hard to get access to real emails for research. Furthermore these emails must be annotated with human generated summaries as well. As these annotated datasets are rare, we have created one and made it publicly available. The BC3 corpus contains annotations for 40 email threads which include extractive summaries, abstractive summaries with links, and labeled speech acts, meta sentences, and subjective sentences. While previous research has shown that machine learning algorithms are a promising approach to email summarization, there has not been a study on the impact of the choice of algorithm. We explore new techniques in email thread summarization using several different kinds of regression, and the results show that the choice of classifier is very critical. We also present a novel feature set for email summarization and do analysis on two email corpora: the BC3 corpus and the Enron corpus.
Tachyusini C. G. Thomson
Creators: name: Klimaszewski, Jan
name: Chandler, Donald S.
name: Davies, Anthony
name: Bourdon, Caroline
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae

description: Tribe Tachyusini C.G. Thomson
Revised key to the northern American genera of Tachyusini
(Adapted from Klimaszewski et al. 2018, Brunke et al. 2021; for additional illustrations to this key see Brunke et al. 2021)
1. Impression of abdominal tergites with very fine punctures similar to those on pronotal disc............................2
- Impression of abdominal tergites with coarse punctures to finer punctures on pronotal disc or impressions glabrous without punctation........................................................................................... 3
2. Pronotum with pubescence directed straight posteriad; hind tarsus subequal in length to hind tibia or longer............................................................................................ Brachyusa Mulsant & Rey
- Pronotum with pubescence directly posteriolaterad from midline; hind tarsus shorter, slightly longer than half the length of hind tibia or shorter....................................................................... Paradilacra Bernhauer
3. Impression of abdominal tergites glabrous without punctation (Figs. 12a, 13a)................................................................................................... Belladonna Klimaszewski and Chandler, gen. n.
- Impressions of abdominal tergites with coarse punctation...................................................... 4
4. Abdomen clavate, at base distinctly narrower than head; tergite III about as long as wide or longer; tergal impressions with median carina.......................................................................... Tachyusa Erichson
- Abdomen at most slightly constricted at base, subequal to or wider than head; tergite III about twice as wide as long or wider; tergal impressions never with median carina................................................................ 5
5. Abdomen at base elongate and moderately constricted, about as wide as head; tergite III at most twice as wide as long; tergal impressions deep and sharply delineated from strongly convex disc......... Dasygnypeta Lohse, (sensu Brunke et al. 2021)
- Abdomen at base almost as wide as elytra or slightly constricted, wider than head; tergite III strongly transverse, ~ 2.5 × wider than long or wider; tergal impressions shallower, gradually sloping to disc at base..................... Gnypeta Thomson
description: Published as part of Klimaszewski, Jan, Chandler, Donald S., Davies, Anthony & Bourdon, Caroline, 2023, Aleocharine rove beetles of New Hampshire, USA: new taxa and new records (Coleoptera, Staphylinidae, Aleocharinae), pp. 1-141 in Zootaxa 5364 (1) on page 113, DOI: 10.11646/zootaxa.5364.1.1, http://zenodo.org/record/10145460
Additional file 1: of Cell-free DNA promoter hypermethylation in plasma as a diagnostic marker for pancreatic adenocarcinoma
Creators: name: Henriksen, Stine
name: Madsen, Poul
name: Larsen, Anders
name: Johansen, Martin
name: AsbjĂ¸Rn Drewes
name: Pedersen, Inge
name: Krarup, Henrik
name: Thorlacius-Ussing, Ole
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: DNA sequences for probes and primers. (DOCX 24Â kb)
Additional file 2: of Systematic review of management strategies to control chronic wasting disease in wild deer populations in North America
Creators: name: F. Uehlinger
name: A. Johnston
name: T. Bollinger
name: C. Waldner
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Marine Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Table with number of unique articles collected from each database searched for literature on management strategies to control chronic wasting disease in wild deer in North America. (DOCX 26Â kb)
Additional file 1: of NEWS for Africa: adaptation and reliability of a built environment questionnaire for physical activity in seven African countries
Creators: name: Adewale Oyeyemi
name: Kasoma, Sandra
name: Onywera, Vincent
name: Assah, Felix
name: Adedoyin, Rufus
name: Conway, Terry
name: Moss, Sarah
name: Ocansey, Reginald
name: Kolbe-Alexander, Tracy
name: Akinroye, Kingsley
name: Prista, Antonio
name: Larouche, Richard
name: Gavand, Kavita
name: Cain, Kelli
name: Lambert, Estelle
name: Richmond Aryeetey
name: Bartels, Clare
name: Tremblay, Mark
name: Sallis, James
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: News-Africa survey (PDF 441 kb)
Additional file 1: of Web-based infectious disease surveillance systems and public health perspectives: a systematic review
Creators: name: Jihye Choi
name: Youngtae Cho
name: Eunyoung Shim
name: Hyekyung Woo
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Science Policy
subject: Computational Biology

description: Prisma checklist. (DOC 65Â kb)
A hybrid P2P pre-release distribution framework for flash crowd avoidance in P2P video on demand streaming
Creators: name: Chiu, Stanley Kai Him
Publisher: name: University of British Columbia
Year: 2009

description: In recent years, the high maintenance cost of centralized video on demand sys tems has led to the development of peer to peer video on demand systems. These peer to peer systems help to remove the cost and bandwidth limitations of a centralized group of servers. In a peer to peer scenario, the publisher and a small set of peers who were published to must handle all video requests. If many peers request a video after it is released, the small set of peers with the video cached may not have enough bandwidth to satisfy all requests. This situation is known as a flash crowd. We propose a hybrid peer to peer framework that allows publishers to publish videos before release time. For marketing purposes, it is common for videos that are ready for distribution to be kept from being released until a preset release time. By distributing a video before the release time, more peers will have the video at release time, thus allowing more requests to be handled. A hybrid peer to peer encryption management system is used to prevent users from viewing videos before release time. In order to determine who to distribute a video to before users are allowed to view the video, we design a hybrid peer to peer subscription system. In this system, users may specify interest in sets of videos and are notified of new videos matching the interest so that retrieval may start. Finally, we modify an existing peer to peer video on demand framework to better handle concurrent streaming and downloading. Our experiments show that this framework can greatly increase a peer to peer streaming system’s ability to handle flash crowd situations.
Additional file 1: of Systematic review of management strategies to control chronic wasting disease in wild deer populations in North America
Creators: name: F. Uehlinger
name: A. Johnston
name: T. Bollinger
name: C. Waldner
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: PRISMA 2009 checklist. The items of the checklist pertain to the content of this systematic review which includes title, abstract, methods, results, discussion and funding. (DOC 67Â kb)
Belladonna fortieri Klimaszewski and Chandler 2023, sp. n.
Creators: name: Klimaszewski, Jan
name: Chandler, Donald S.
name: Davies, Anthony
name: Bourdon, Caroline
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Belladonna
Belladonna fortieri

description: 244. Belladonna fortieri Klimaszewski and Chandler, sp. n.
Figs. 13 a-g, Table 1
Holotype (male). USA, Maine, York Co.: West Lebanon, 21–23.V.1991, D.W. Barry, FIT (CNC). Paratypes: Maine, York Co.: West Lebanon, 21–23.V.1991, D.W. Barry, FIT, 2 males; 10–16.VII.1990, D.W. Barry, FIT, 1 male, 1 female. New Hampshire, Strafford Co.: Spruce Hole, 3 mi SW Durham, 18–26.VI.1990, G. Fortier, FIT on mat, 4 females; 1–17.VI.1990, G. Fortier and D. Chandler, FIT on mat, 1 female; 20–25.V.1990, G. Fortier and D. Chandler, FIT, 2 females; 26.V.1987, D. Chandler, sift leaf litter on bog margin, 1 female. 1 mi SW Durham, 3.V.1985, D.S. Chandler, berlese grass clumps in swamp, 1 female.
Etymology. Named for Gay Fortier, collector of most of the type specimens, former graduate student of the University of New Hampshire and the University of Alberta, and formerly working as a technician on mites at the Florida State Collection of Arthropods in Gainesville (now retired).
Diagnosis. Male tergite VIII with two sharp apical teeth distributed laterally, median teeth not apparent (Fig. 13c); apical part of median lobe of aedeagus narrowly elongate and sinuate (Fig. 13b); spermathecal capsule ovoid in lateral view, stem more or less evenly wide (Fig. 13g).
Description. Externally, except for male tergite VIII with only two teeth, this species is not distinguishable from B. barryi. Body length 3.34–3.71 mm, body broadly oval, moderately convex (Fig. 13a). Male. Tergite VIII with two large lateral teeth, median ones not apparent (Fig. 13c); sternite VIII parabolic apically (Fig. 13d); median lobe of aedeagus distinct, in lateral view bulbus broadly oval and slightly compressed dorso-ventrad, crista apicalis broad, of triangular shape, tubus short with apex narrowly elongate and produced ventrad, its margins slightly sinuate (Fig. 13b). Female. Tergite VIII truncate apically (Fig. 13e); sternite VIII rounded apically (Fig. 13f); spermatheca Scurved, capsule ovoid with truncate apex, median invagination shallow; stem sinuate, evenly narrow (Fig. 13g).
Distribution. Nearctic. Canada: no records. USA: ME, NH.
Collection and Habitat data. Adults were captured by flight intercept traps on the Sphagnum mat of a kettle bog, from leaf litter on the bog margin, and from grass clumps in a freshwater swamp. Taken solely by a FIT in ME. Collected from May to June in NH, also taken in July at the ME site.
description: Published as part of Klimaszewski, Jan, Chandler, Donald S., Davies, Anthony & Bourdon, Caroline, 2023, Aleocharine rove beetles of New Hampshire, USA: new taxa and new records (Coleoptera, Staphylinidae, Aleocharinae), pp. 1-141 in Zootaxa 5364 (1) on pages 116-118, DOI: 10.11646/zootaxa.5364.1.1, http://zenodo.org/record/10145460
Additional file 2: of Cell-free DNA promoter hypermethylation in plasma as a diagnostic marker for pancreatic adenocarcinoma
Creators: name: Henriksen, Stine
name: Madsen, Poul
name: Larsen, Anders
name: Johansen, Martin
name: AsbjĂ¸Rn Drewes
name: Pedersen, Inge
name: Krarup, Henrik
name: Thorlacius-Ussing, Ole
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Characteristics of genes used in the gene panel. (DOCX 23Â kb)
Interactive tools for biomechanical modeling and realistic animation
Creators: name: Kaufman, Andrew
Publisher: name: University of British Columbia
Year: 2008

description: We describe a semi-automatic technique for modeling and animating complex musculoskeletal systems using a strand based muscle model. Using our interactive tools, we are able to generate the motion of tendons and muscles under the skin of a traditionally animated character. This is achieved by integrating the traditional animation pipeline with a biomechanical simulator capable of dynamic simulation with complex routing constraints on muscles and tendons. We integrate our musculoskeletal modeling and animation toolkit into a professional 3D production environment, thereby enabling artists and scientists to create complex musculoskeletal systems that were previously inaccessible to them. We demonstrate the applications of our tools to the visual effects industry with several animations of the human hand and applications to the biomechanics community with a novel model of the human shoulder.
Additional file 2: of NEWS for Africa: adaptation and reliability of a built environment questionnaire for physical activity in seven African countries
Creators: name: Adewale Oyeyemi
name: Kasoma, Sandra
name: Onywera, Vincent
name: Assah, Felix
name: Adedoyin, Rufus
name: Conway, Terry
name: Moss, Sarah
name: Ocansey, Reginald
name: Kolbe-Alexander, Tracy
name: Akinroye, Kingsley
name: Prista, Antonio
name: Larouche, Richard
name: Gavand, Kavita
name: Cain, Kelli
name: Lambert, Estelle
name: Richmond Aryeetey
name: Bartels, Clare
name: Tremblay, Mark
name: Sallis, James
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Summary of results of cognitive testing of NEWS-AfricaÂ survey (DOC 42 kb)
Additional file 1: Table S1. of Overall survival after reirradiation of spinal metastases â   independent validation of predictive models
Creators: name: Buergy, Daniel
name: Siedlitzki, Lena
name: Boda-Heggemann, Judit
name: Wenz, Frederik
name: Lohr, Frank
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Marine Biology
subject: Science Policy
subject: Plant Biology

description: All items that contribute to each SPT are shown and ranked according to the risk that has been assigned to each item by the authors of each SPT. (PDF 166 kb)
Additional file 4: of Cell-free DNA promoter hypermethylation in plasma as a diagnostic marker for pancreatic adenocarcinoma
Creators: name: Henriksen, Stine
name: Madsen, Poul
name: Larsen, Anders
name: Johansen, Martin
name: AsbjĂ¸Rn Drewes
name: Pedersen, Inge
name: Krarup, Henrik
name: Thorlacius-Ussing, Ole
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Level of cell-free DNA. (DOCX 15Â kb)
Brachyusa helenae
Creators: name: Klimaszewski, Jan
name: Chandler, Donald S.
name: Davies, Anthony
name: Bourdon, Caroline
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Brachyusa
Brachyusa helenae

description: 245. Brachyusa helenae (Casey)
(Illustrations in Klimaszewski et al. 2018, Brunke et al. 2021), Table 1
References. Casey 1911. Klimaszewski et al. 2011, 2012, 2016, 2018, 2020, 2021. Brunke et al. 2012. Webster et al. 2012.
Distribution. Nearctic. Canada: BC, LB, NB, NF, NT, ON, SK, YT. USA: AK, MT, NH (NSR).
Collection and Habitat data. Both NH specimens were taken by sweeping riparian vegetation along the Connecticut River in July and September. In Canada found in litter, gravel, flood debris, and grasses along shores of rivers and streams near flowing water, and in debris of an American beaver (Castor canadensis Kuhl) dam near the outflow area; one specimen from debris within wall of beaver lodge (Webster et al. 2012, Klimaszewski et al. 2021). In BC specimens were collected in sedges along a creek, and from river debris and in coarse woody debris (Klimaszewski et al. 2020).
Material. USA, New Hampshire, Grafton Co.: Bedell Bridge St. Park @ Oliverian Brook, 3.VII.1992, D.S. Chandler, sweep riparian vegetation along river, 1 female; 29.IX.1992, D.S. Chandler, sweep riparian vegetation along river, 1 sex?
description: Published as part of Klimaszewski, Jan, Chandler, Donald S., Davies, Anthony & Bourdon, Caroline, 2023, Aleocharine rove beetles of New Hampshire, USA: new taxa and new records (Coleoptera, Staphylinidae, Aleocharinae), pp. 1-141 in Zootaxa 5364 (1) on page 118, DOI: 10.11646/zootaxa.5364.1.1, http://zenodo.org/record/10145460
Additional file 5: Figure S4. of Genome-wide identification and expression analysis of the ClTCP transcription factors in Citrullus lanatus
Creators: name: Pibiao Shi
name: Kateta Guy
name: Weifang Wu
name: Bingsheng Fang
name: Jinghua Yang
name: Mingfang Zhang
name: Zhongyuan Hu
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology
subject: 60506 Virology

description: Relative chlorophyll content in Arabidopsis leaves. (PDF 371 kb)
Additional file 3: of Systematic review of management strategies to control chronic wasting disease in wild deer populations in North America
Creators: name: F. Uehlinger
name: A. Johnston
name: T. Bollinger
name: C. Waldner
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Summary table of evidence for effectiveness, sources of uncertainty, and other limitations for 9 predictive and observational studies evaluating control of chronic wasting disease in wild deer in North America. (DOCX 36Â kb)
MMSP : an alternative transport protocol for multiple co-existing networks
Creators: name: Song, Haoran
Publisher: name: University of British Columbia
Year: 2009

description: Mobile Multi-Streaming Protocol (MMSP) is a new protocol combining and abstracting the essential functionalities of TCP and UDP for multiple coex isting networks. It inherits the good characteristics from TCP while over comes many drawbacks from it. The most important features of MMSP is multi-streaming within a single connection. Our work proposes, investigates and provides a concept for maintaining a reliable connection by setting up multiple streams via different network interfaces. We designed and imple mented a bunch of new packet formats, algorithms and state machines. Our experiments have successfully proved that MMSP provides a func tional solution to satisfy many requirements for up-layer protocols and ap plications in both wired and wireless networks, producing higher network throughput, security and reliability. Especially for mobile networks, the unique design and characteristics of MMSP is in the ascendant. It is a successful protocol extension of the transport layer on IP stack.
Gnypeta caerulea
Creators: name: Klimaszewski, Jan
name: Chandler, Donald S.
name: Davies, Anthony
name: Bourdon, Caroline
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Gnypeta
Gnypeta caerulea

description: 248. Gnypeta caerulea (Sahlberg) *
(Illustrations in Klimaszewski et al. 2008b, 2018), Table 1
References. C.R. Sahlberg 1831. Majka and Klimaszewski 2008b. Klimaszewski et al. 2008b, 2011, 2015 a, 2018, 2020, 2021.
Distribution. Holarctic, recorded from A/S (Klimaszewski et al. 2021). Canada: AB, BC, LB, MB, NF, NS, NB, NT, ON, PE, QC, SK, YT. USA: AK, NH (NSR).
Collection and Habitat data. In NH captured at a high elevation, 5000’, as well as at a low elevation kettle bog in June that is known for its relict boreal fauna, here captured by a flight intercept trap. In Canada recorded from riparian and wetland habitats: from drift material along river margins, from gravel and under cobblestones on margins of cool, clear shaded brooks, treading emergent Carex and grasses on lake margin, sifted from leaf litter on beaver pond margin, from sticks and debris from outflow area of beaver dam, sifted from leaves and sedges on pond margin, and sifted from Sphagnum on swamp edges; also taken by sweeping marsh vegetation (Klimaszewski et al. 2008b, 2021).
Material. USA, New Hampshire, Coos Co.: Mt. Washington, Lake of the Clouds, 5000’, 10.IX.1987, A. Smetana (CNC), 1 female. Strafford Co.: Spruce Hole, 3 mi SW Durham, 11–18.VI.1987, D.S. Chandler, FIT, 1 female.
description: Published as part of Klimaszewski, Jan, Chandler, Donald S., Davies, Anthony & Bourdon, Caroline, 2023, Aleocharine rove beetles of New Hampshire, USA: new taxa and new records (Coleoptera, Staphylinidae, Aleocharinae), pp. 1-141 in Zootaxa 5364 (1) on page 119, DOI: 10.11646/zootaxa.5364.1.1, http://zenodo.org/record/10145460
Additional file 4: of NEWS for Africa: adaptation and reliability of a built environment questionnaire for physical activity in seven African countries
Creators: name: Adewale Oyeyemi
name: Kasoma, Sandra
name: Onywera, Vincent
name: Assah, Felix
name: Adedoyin, Rufus
name: Conway, Terry
name: Moss, Sarah
name: Ocansey, Reginald
name: Kolbe-Alexander, Tracy
name: Akinroye, Kingsley
name: Prista, Antonio
name: Larouche, Richard
name: Gavand, Kavita
name: Cain, Kelli
name: Lambert, Estelle
name: Richmond Aryeetey
name: Bartels, Clare
name: Tremblay, Mark
name: Sallis, James
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Picture guide for NEWS-Africa survey (PDF 1318 kb)
An adaptive packet size approach to TCP congestion control
Creators: name: Wilson, Steven
Publisher: name: University of British Columbia
Year: 2009

description: This thesis investigates the ability for TCP, the dominant transport protocol used in the Internet, to fairly allocate bandwidth to all competing sources under conditions of severe congestion. The conditions necessary for such congestion are quite common, and we have observed that the TCP congestion control algorithm does a poor job of balancing the bandwidth fairly among competing flows. We present a potential solution to this problem by using a variable maximum segment size in TCP. We show the benefits gained by doing this along with some of the problems encountered in the course of this work.
Gnypeta carbonaria
Creators: name: Klimaszewski, Jan
name: Chandler, Donald S.
name: Davies, Anthony
name: Bourdon, Caroline
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Gnypeta
Gnypeta carbonaria

description: 249. Gnypeta carbonaria (Mannerheim) *
(Illustrations in Klimaszewski et al. 2008b, 2018), Table 1
References. Mannerheim 1830. Palm 1966. Klimaszewski et al. 2008b, 2011, 2018, 2021.
Distribution. Holarctic, recorded from A/S (Klimaszewski et al. 2021). Canada: AB, MB, NB, NF, NT, ON, QC, SK. USA: AK, NH (NSR).
Collection and Habitat data. In NH found in moss on rocks in a stream in an old-growth deciduous/coniferous forest in June, and taken by UV light trap in an old-growth silver maple flood plain forest in August. In Canada found mostly in riparian habitats, often collected by splashing riparian areas: river margins in drift material (mostly maple seeds) and flood debris, river margin on clay sand mix on steep bank (splashing), collected by splashing moss near splash zone of waterfalls, splashing gravel along small shaded brook, treading reeds in a marsh next to river; also, collected from wet ground in a bog; also found in a rotten fungus, and taken by a UV light trap (Klimaszewski et al. 2021).
Material. USA, New Hampshire, Carroll Co.: The Bowl, 2.5 mi NW Wonalancet, 8.VI.1984, D.S. Chandler, moss on rocks in stream, 1 female. Grafton Co.: Bedell Bridge St. Park @ Oliverian Brook, 25.VIII.1992, D.S. Chandler, UV trap, 1 female.
description: Published as part of Klimaszewski, Jan, Chandler, Donald S., Davies, Anthony & Bourdon, Caroline, 2023, Aleocharine rove beetles of New Hampshire, USA: new taxa and new records (Coleoptera, Staphylinidae, Aleocharinae), pp. 1-141 in Zootaxa 5364 (1) on page 119, DOI: 10.11646/zootaxa.5364.1.1, http://zenodo.org/record/10145460
Gnypeta helenae Casey
Creators: name: Klimaszewski, Jan
name: Chandler, Donald S.
name: Davies, Anthony
name: Bourdon, Caroline
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Gnypeta
Gnypeta helenae

description: 250. Gnypeta helenae Casey
(Illustrations in Klimaszewski et al. 2008b, 2018), Table 1
References. Casey 1906. Klimaszewski et al. 2008b, 2018. Brunke et al. 2012.
Distribution. Nearctic. Canada: AB, BC, ON. USA: AZ, CA, CO, MT, NH (NSR), NV, NM, ND, OR.
Collection and Habitat data. In NH found by sweeping riparian vegetation in a silver maple floodplain forest in August. In Canada taken from banks of rivers and lakes and from the edge of a eutrophic pond; some collected from silt around Typha (cattails) on a river bank (Klimaszewski et al. 2008b, 2018).
Material. USA, New Hampshire, Grafton Co.: Bedell Bridge St. Park @ Oliverian Brook, 3.VIII.1992, D.S. Chandler, sweep riparian vegetation in forest, 1 female.
description: Published as part of Klimaszewski, Jan, Chandler, Donald S., Davies, Anthony & Bourdon, Caroline, 2023, Aleocharine rove beetles of New Hampshire, USA: new taxa and new records (Coleoptera, Staphylinidae, Aleocharinae), pp. 1-141 in Zootaxa 5364 (1) on page 119, DOI: 10.11646/zootaxa.5364.1.1, http://zenodo.org/record/10145460
Additional file 3: of NEWS for Africa: adaptation and reliability of a built environment questionnaire for physical activity in seven African countries
Creators: name: Adewale Oyeyemi
name: Kasoma, Sandra
name: Onywera, Vincent
name: Assah, Felix
name: Adedoyin, Rufus
name: Conway, Terry
name: Moss, Sarah
name: Ocansey, Reginald
name: Kolbe-Alexander, Tracy
name: Akinroye, Kingsley
name: Prista, Antonio
name: Larouche, Richard
name: Gavand, Kavita
name: Cain, Kelli
name: Lambert, Estelle
name: Richmond Aryeetey
name: Bartels, Clare
name: Tremblay, Mark
name: Sallis, James
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Interview manual for NEWS-Africa survey (PDF 375 kb)
Metal ion-sensing metalloreceptors that trigger photocrine signaling-based organismal communication
Creators: name: Anbalagan, Savani
Publisher: name: Zenodo
Year: 2024

description: Understanding how organisms communicate is a fundamental question in biology and is an evolutionarily important milestone. Organisms can communicate via numerous mechanisms including acoustic, gas, and even light-based signaling. Terrestrial organisms largely communicate via gasocrine signaling mediated via gaseous signaling molecules sensed via gas-sensing gasoreceptors.  Similar communication principles must also exist in marine organisms and one such mechanism is bioluminescence-mediated communication. However, to the best of my knowledge, there are no specific scientific terms to describe such bioluminescence-mediated organismal communication. I expand photocrine signaling to include light-mediated communication between organisms. Photocrine signaling seems to require metal-ion sensing metalloreceptor proteins such as magnesium-sensing luciferase metalloreceptor and calcium-sensing aequorin metalloreceptor. Similar to luciferase and aequorin metalloreceptors, there must be other metalloreceptors for other metal ions.
Dasygnypeta nigrella
Creators: name: Klimaszewski, Jan
name: Chandler, Donald S.
name: Davies, Anthony
name: Bourdon, Caroline
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Dasygnypeta
Dasygnypeta nigrella

description: 246. Dasygnypeta nigrella (LeConte)
(Illustrations in Klimaszewski et al. 2018, Brunke et al. 2021), Table 1
References. LeConte 1863. Klimaszewski et al. 2008b, 2018. Brunke et al. 2021.
Distribution. Nearctic. Canada: MB, NB, NF, ON, QC. USA: IL, MA, MD, NH (NSR), NJ, NY, PA, VT.
Collection and Habitat data. The NH specimens were all taken from an old-growth silver maple floodplain forest where a small stream with adjacent vernal pools entered the Connecticut River. Captured by splashing stream banks in forest, by sweeping forest riparian vegetation, and collected by flight intercept and UV light traps. Collected from May to August. In Canada found in riparian habitats and on pond margins: among cobblestones near water, in drift material (mostly maple seeds), in mixed forest in most leaf litter on margin of vernal pond, treading edge of eutrophic pond, and from pond margin in moist grass litter on mud (Klimaszewski et al. 2008b, 2018).
Material. USA, New Hampshire, Grafton Co.: Bedell Bridge St. Park @ Oliverian Brook, 7.VI.1992, 3.VII.1992, 26.VII.1992, 3.VIII.1992, splash stream bank in forest, D.S. Chandler, 10 males, 9 females, 1 sex?; 23.V.1992, UV trap, 1 male; 24.V.1992, 26.VII.1992, 25.VIII.1992, sweep riparian vegetation in forest, 1 male, 2 females, 1 sex; 23.VI–3.VII.1992, D.S. Chandler, FITrap, 1 sex?
description: Published as part of Klimaszewski, Jan, Chandler, Donald S., Davies, Anthony & Bourdon, Caroline, 2023, Aleocharine rove beetles of New Hampshire, USA: new taxa and new records (Coleoptera, Staphylinidae, Aleocharinae), pp. 1-141 in Zootaxa 5364 (1) on page 118, DOI: 10.11646/zootaxa.5364.1.1, http://zenodo.org/record/10145460
Gnypeta atrolucens Casey 1893
Creators: name: Klimaszewski, Jan
name: Chandler, Donald S.
name: Davies, Anthony
name: Bourdon, Caroline
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Gnypeta
Gnypeta atrolucens

description: 247. Gnypeta atrolucens Casey
(Illustrations in Klimaszewski et al. 2008b, 2018), Table 1
References. Casey 1893. Fenyes 1912. Klimaszewski et al. 2008b, 2011, 2018. Webster et al. 2012.
Distribution. Nearctic. Canada: LB, NB, NF, QC. USA: NH, NY, VT.
Collection and Habitat data. The NH specimens were found at the base of a waterfall in May and July. In Canada found in riparian habitats: often in moss near water falls near splash zone, on rocks in fast flowing streams, on rocks in middle of rivers and brooks (adults in moss and in cracks in rocks), and from a gravel bar on a river margin (Webster et al. 2012). Some were collected from moss and gravel along edges of forest streams and shallow pools at an elevation of 1100m in shrubby barrens (Klimaszewski et al. 2018).
Material. USA, New Hampshire, Coos Co.: Beaver Brook Falls, 3 mi NE Colebrook, 28.V.1986, 1 male; 8.VII.1986, D.S. Chandler, base of falls 1 female.
description: Published as part of Klimaszewski, Jan, Chandler, Donald S., Davies, Anthony & Bourdon, Caroline, 2023, Aleocharine rove beetles of New Hampshire, USA: new taxa and new records (Coleoptera, Staphylinidae, Aleocharinae), pp. 1-141 in Zootaxa 5364 (1) on pages 118-119, DOI: 10.11646/zootaxa.5364.1.1, http://zenodo.org/record/10145460
PSS : a phonetic search system for short text documents
Creators: name: Zhang, Jerry Jiaer
Publisher: name: University of British Columbia
Year: 2009

description: Finding the right information from the increasing amount of data on the Internet is not easy. This is why most people use search engines because they make searching less difficult with a a variety of techniques. In this thesis, we address one of them called phonetic matching. The idea is to look for documents in a document set based on not only the spellings but their pronunciations as well. It is useful when a query contains spelling mistakes or a correctly spelled one does not return enough results. In these cases, phonetic matching can fix or tune up the original query by replacing some or all query words with the new ones that are phonetically similar, and hopefully achieve more hits. We propose the design of such a search system for short text documents. It allows for single- and multiple-word queries to be matched to sound-like words or phrases contained in a document set and sort the results in terms of their relevance to the original queries. Our design differs from many existing systems in that, instead of relying heavily on a set of extensive prior user query logs, our system makes search decisions mostly based on a relatively small dictionary consisting of organized metadata. Our goal is to make it suitable for start-up document sets to have the comparable phonetic search ability as those of bigger databases, without having to wait till enough historical user queries are accumulated.
Gnypeta sellmani Brundin 1929
Creators: name: Klimaszewski, Jan
name: Chandler, Donald S.
name: Davies, Anthony
name: Bourdon, Caroline
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Gnypeta
Gnypeta sellmani

description: 251. Gnypeta sellmani Brundin *
(Illustrations in Klimaszewski et al. 2008b, 2018), Table 1
References. Brundin 1929. Palm 1966. Klimaszewski et al. 2008b, 2011, 2018, 2021.
Distribution. Holarctic, recorded from A/S (Klimaszewski et al. 2021). Canada: LB, MB, NF, NT QC, SK, YT. USA: AK, NH (NSR).
Collection and Habitat data. The NH specimens were found at an elevation of 4800’ in September. Habitat data was lacking, but this area is transitional into the alpine zone. In Canada recorded from marshes, sedges around the edge of a pond, and one specimen was captured on snow on Devon Island (NU) (Klimaszewski et al. 2021).
Material. USA, New Hampshire, Coos Co.: Mt. Washington Road, 4800’, 12.IX.1987, A. Smetana (CNC), 3 males, 3 females, 3 sex?
description: Published as part of Klimaszewski, Jan, Chandler, Donald S., Davies, Anthony & Bourdon, Caroline, 2023, Aleocharine rove beetles of New Hampshire, USA: new taxa and new records (Coleoptera, Staphylinidae, Aleocharinae), pp. 1-141 in Zootaxa 5364 (1) on page 120, DOI: 10.11646/zootaxa.5364.1.1, http://zenodo.org/record/10145460
Tachyusa americana Casey
Creators: name: Klimaszewski, Jan
name: Chandler, Donald S.
name: Davies, Anthony
name: Bourdon, Caroline
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Tachyusa
Tachyusa americana

description: 252. Tachyusa americana Casey
(Illustrations in Paśnik 2006, Klimaszewski et al. 2018), Table 1
References. Casey 1906, Paśnik 2006, Webster et al. 2009b, Klimaszewski et al. 2018.
Distribution. Nearctic. Canada: NB, ON, QC. USA: CO, DC, FL, IA, IL, IN, MA, MD, MN, NH, NJ, NY, OH, PA, VT, WI.
Collection and Habitat data. The NH specimens were captured in maple litter along a stream in a forest, riparian vegetation in a forest, and in a slough area at an old-growth silver maple floodplain forest. Collected from May to November. In Canada recorded from riparian habitats and pond margins, usually associated with muddy or clay soils; margins of beaver ponds on muddy soil, on mud with sparse vegetation along a sun-exposed stream margin through a former beaver pond (many adults observed running on bare mud), pond margin in moist grass litter on mud (Webster et al. 2009b).
Material. USA, New Hampshire, Grafton Co.: Bedell Bridge St. Park @ Oliverian Brook, 3.VII.1992, D.S. Chandler, berlese maple litter along stream in forest, 2 females, 2 sex?; splash stream bank in forest, 1 sex?; 26.VII.1992, D.S. Chandler, sweep riparian vegetation in forest, 1 male; 24.V.1992, D.S. Chandler, 2 sex? Merrimack Co.: 1 mi N Concord, Merrimack River, 16.X–l 4.XI.1998, D.S. Chandler, slough zone, pitfall, 1 male.
description: Published as part of Klimaszewski, Jan, Chandler, Donald S., Davies, Anthony & Bourdon, Caroline, 2023, Aleocharine rove beetles of New Hampshire, USA: new taxa and new records (Coleoptera, Staphylinidae, Aleocharinae), pp. 1-141 in Zootaxa 5364 (1) on page 120, DOI: 10.11646/zootaxa.5364.1.1, http://zenodo.org/record/10145460