cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1 of The clinical characteristics and prognosis in adult Ph negative acute lymphoblastic leukemia with TP53 aberrations
Creators: name: Fang, Qiuyun
name: Gong, Xiaoyuan
name: Liu, Kaiqi
name: Jia, Yujiao
name: Song, Yang
name: Zhang, Guangji
name: Li, Yan
name: Hao, Qishan
name: Ma, Yueshen
name: Wei, Shuning
name: Liu, Bingcheng
name: Wang, Ying
name: Wei, Hui
name: Wang, Jianxiang
name: Mi, Yingchang
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Biotechnology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Hematology
subject: Virology

description: Additional file 1: Table S1. The concomitant gene mutations of patients with TP53 aberrations. Table S2. The clinical characteristics in patients with TP53 aberrations and without TP53 aberrations. Table S3. The COX regression analysis of the Ph− ALL patients, the covariate including TP53 aberrations, WBC count, age and whether or not they underwent allo-SCT. Figure S1. The 3-year OS (A) and 3-year DFS (B) of patients with TP53 aberrations compared with patients without TP53 aberrations in the 137 patients who didn’t undergo allo-SCT. The 3-year OS (C) and 3-year DFS (D) of the 4 different groups (MLL rearrangement, E2A/PBX1, TP53 aberrations, other-types) in the 137 patients who didn’t undergo allo-SCT. Figure S2. The 3-year OS and 3-year DFS of the patients with TP53 aberrations who underwent allo-SCT vs. the patients who did not undergo allo-SCT grouped according to MRD level on day 14 (A, B) and day 28 (C, D) from the therapy initiation.
A Dwarf Disrupting -- Andromeda XXVII and the North West Stream
Creators: name: Preston, Janet
name: Collins, Michelle L. M.
name: Ibata, Rodrigo A.
name: Tollerud, Erik J.
name: Rich, R. Michael
name: Bonaca, Ana
name: McConnachie, Alan W.
name: Mackey, Dougal
name: Lewis, Geraint F.
name: Martin, Nicolas F.
name: Peñarrubia, Jorge
name: Chapman, Scott C.
name: Delorme, Maxime
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We present a kinematic and spectroscopic analysis of 38 red giant branch stars, in 7 fields, spanning the dwarf spheroidal galaxy Andromeda XXVII and the upper segment of the North West Stream. Both features are located in the outer halo of the Andromeda galaxy at a projected radius of 50-80 kpc, with the stream extending for $\sim$3$^{\circ}$ on the sky. Our data is obtained as part of the PAndAS survey and enables us to confirm that Andromeda XXVII's heliocentric distance is 827 $\pm$ 47 kpc and spectroscopic metallicity is -2.1$^{+0.4}_{-0.5}$. We also re-derive Andromeda XXVII's kinematic properties, measuring a systemic velocity = -526.1$^{+10.0}_{-11.0}${\kms} and a velocity dispersion that we find to be non-Gaussian but for which we derive a formal value of 27.0$^{+2.2}_{-3.9}${\kms}. In the upper segment of the North West Stream we measure mean values for the metallicity = -1.8$\pm$0.4, systemic velocity = -519.4 $\pm$4.0{\kms} and velocity dispersion = 10.0$\pm$4.0{\kms}. We also detect a velocity gradient of 1.7$\pm$0.3 {\kms} kpc$^{-1}$ on an infall trajectory towards M31. With a similar gradient, acting in the same direction, in the lower segment we suggest that the North West Stream is not a single structure. As the properties of the upper segment of the North West Stream and Andromeda XXVII are consistent within ~90\% confidence limits, it is likely that the two are related and plausible that Andromeda XXVII is the progenitor of this stream.
description: 15 pages, 10 figures
Chetocera Robineau-Desvoidy 1830
Creators: name: Evenhuis, Neal L.
name: O'Hara, James E.
name: Pape, Thomas
name: Pont, Adrian C.
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Sciomyzidae
Chetocera

description: 97. Chetocera Robineau-Desvoidy, 1830: 697.
 ORIGINALLY INCLUDED SPECIES: Chetocera claripennis Robineau-Desvoidy, 1830.
 TYPE SPECIES: Chetocera claripennis Robineau-Desvoidy, 1830 [= Sciomyza albocostata Fallén, 1820], by monotypy.
 CURRENT STATUS: Valid subgenus of Pherbellia Robineau-Desvoidy, 1830 [teste Rozkošný & Elberg (1984: 170)].
FAMILY: SCIOMYZIDAE.
 EMENDATIONS: Chaetocera Agassiz, 1846b: 73, 80 (unjustified).
description: Published as part of Evenhuis, Neal L., O'Hara, James E., Pape, Thomas & Pont, Adrian C., 2010, 2373, pp. 1-265 in Zootaxa 2373 on page 55
In Summaries and Diagrams: Teaching Prayer and Poetry in Lancelot Andrewes and Edmund Spenser
Creators: name: Osorio Whewell, Esther
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Lancelot Andrewes
Edmund Spenser
book history
prayer
poetry
poetics
diagrams
diagrammatics
Petrus Ramus
curly brackets
narratology
sermons
Faerie Queene
logic
devotion
Cambridge
Pembroke College

description: This thesis is concerned with intersections between poetry and prayer, in printed texts attributed to Edmund Spenser and Lancelot Andrewes. It takes as a starting point the pervasiveness of Ramism at Pembroke College Cambridge during these two writers’ overlapping years spent there as undergraduates, proposing that Ramist ideologies of the short and efficient, the organised, the hierarchical, the one-size-fits-all diagrammatic text, offer new ways of understanding the pedagogical aspirations—and the formal mechanisms—of Andrewes’s literary homiletics and Spenser’s religious allegories. I will be preoccupied above all by poetic economies of page space and prayer time: in representations of large in small, or the extraordinary in the ordinary, and the anxieties and humilities involved in such inadequate accommodated ‘insteads’. Chapter one examines printed English versions of Andrewes’s Preces Privatae, reading its mise-en-page as reminiscent of Ramist logic books, and beginning to establish an early modern context of instrumental ‘diagrammatic reading’ by taking a particular interest in the work of curly braces as a ‘didactic technology’ which both performs and instructs prayer on the printed page. Chapter two considers Spenser’s Fowre Hymnes as devotional poems. Read diagrammatically, by their complicated poetic hierarchies and chronologies these self-sacred parodies enact a thinking-through of the theological cruxes of the Incarnation and its meditative contemplation in the broken gift-cycle of prayerful thanksgiving. Chapter three uses grammatical anaphors and abridgements in Andrewes’s Passion sermons and the Pattern of Catechistical Doctrine to derive a theory of accommodated reading based on metaphorical sizes and imaginary dimensions. My final chapter reads the ballad-stanza ‘Arguments’ with which Spenser prolepsises and summarises every Canto in The Faerie Queene as recognisably generic paratexts with analogies in the Geneva Bible, Thomas Speght’s 1598 collected Chaucer, printed plays, and the Sternhold-Hopkins psalter. Short, simple, and economical, the four-line Arguments seem at first a very different poetical space from the Spenserian stanza—but on closer reading, they demand an investment in the dimensions of printed language and the spaces and syntax of its storytelling which fits persuasively with the wider poetics of The Faerie Queene and with its narrative structures.
description: This research was funded by a PhD studentship awarded by the Arts and Humanities Research Council (UK) Doctoral Training Partnership, and a Hogwood Scholarship at Jesus College.
Radio sources in the 2dF Galaxy Redshift Survey - II. Local radio luminosity functions for AGN and star-forming galaxies at 1.4 GHz
Creators: name: Sadler, Elaine M.
name: Jackson, Carole A.
name: Cannon, Russell D.
name: McIntyre, Vincent J.
name: Murphy, Tara
name: Bland-Hawthorn, J.
name: Bridges, T.
name: Cole, S.
name: Colless, M.
name: Collins, C.
name: Couch, W.
name: Dalton, G.
name: De Propris, R.
name: Driver, S. P.
name: Efstathiou, G.
name: Ellis, R. S.
name: Frenk, C. S.
name: Glazebrook, K.
name: Lahav, O.
name: Lewis, I.
name: Lumsden, S.
name: Maddox, S.
name: Madgwick, D.
name: Norberg, P.
name: Peacock, J. A.
name: Peterson, B. A.
name: Sutherland, W.
name: Taylor, K.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We have cross-matched the 1.4 GHz NRAO VLA Sky Survey (NVSS) with the first 210 fields observed in the 2dF Galaxy Redshift Survey (2dFGRS), covering an effective area of 325 square degrees (about 20% of the final 2dFGRS area). This yields a set of optical spectra of 912 candidate NVSS counterparts, of which we identify 757 as genuine radio IDs - the largest and most homogeneous set of radio-source spectra ever obtained. The 2dFGRS radio sources span the redshift range z=0.005 to 0.438, and are a mixture of active galaxies (60%) and star-forming galaxies (40%). About 25% of the 2dFGRS radio sources are spatially resolved by NVSS, and the sample includes three giant radio galaxies with projected linear size greater than 1 Mpc. The high quality of the 2dF spectra means we can usually distinguish unambiguously between AGN and star-forming galaxies. We have made a new determination of the local radio luminosity function at 1.4 GHz for both active and star-forming galaxies, and derive a local star-formation density of 0.022+/-0.004 solar masses per year per cubic Mpc. (Ho=50 km/s/Mpc).
description: Final version after refereeing. Figs 5, 7 and 8 available as .ps files at http://www.physics.usyd.edu.au/astrop/ems/2df
State Responsibility for the Unlawful Conduct of Armed Groups
Creators: name: Eatwell, Tatyana Jane
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: International law
State Responsibility
Attribution
Armed Groups

description: The law of state responsibility codified by the International Law Commission (ILC) in its Articles on the Responsibility of States (ARS) is analysed with respect to unlawful acts of an armed group where: (i) the state provides substantial support to the group; (ii) the group exercises governmental authority over part of the state’s territory; and (iii) a successful insurrection results in the establishment of a new government or a new state. Part One addresses (i) and the control and agency paradigm central to the ARS. The ‘effective control’ test applied to identify a state’s agents (article 8 ARS) means that state-sponsors of terrorism or international crimes will avoid direct responsibility by holding proxies at arms-length. This thesis challenges the arguments that attribution should be based on ‘overall control’ in such cases. Instead, this thesis proposes a rule of derivative responsibility for complicity that draws on primary obligations under international humanitarian and human rights law that prohibit encouragement or facilitation of certain acts. Part Two addresses (ii) and (iii) and the application of articles 9 and 10(1) and (2) ARS respectively – exceptions to the control and agency paradigm that have been generally overlooked in discourse. With regard to (ii) this thesis counters recent scholarship that argues that article 9 will apply to the ‘governmental’ acts of armed opposition groups. Doctrinal analysis shows that article 9 will only cover the conduct of an armed group that acts in the interests of, or with the acquiescence of, the state’s authorities. A critical approach is taken to the ILC’s codification of articles 10(1) and (2) that cover circumstances (iii): Contrary to the ILC’s position, this thesis argues that the ‘peace v. justice’ debate should not influence article 10(1)’s application to governments of national reconciliation. Further, it is shown that article 10(2) is seriously flawed: the rule requires the new state to be bound by international obligations before that state existed in fact, a notion not supported by state practice or doctrine.
title: 01_2699
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
On the Orbital Period of the Intermediate Polar 1WGA J1958.2+3232
Creators: name: Zharikov, Sergei V.
name: Tovmassian, Gaghik H.
name: Echevarria, Juan
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Recently, Norton et al. 2002, on the basis of multiwavelength photometry of 1WGA J1958.2+3232, argued that the -1 day alias of the strongest peak in the power spectrum is the true orbital period of the system, casting doubts on the period estimated by Zharikov et al. 2001. We re-analyzed this system using our photometric and spectroscopic data along with the data kindly provided by Andy Norton and confirm our previous finding. After refining our analysis we find that the true orbital period of this binary system is 4.35h.
description: 4 pages, 5 figures, Accepted for publication in A&A Letters
Iain Donald Campbell - Bibliography from Iain Donald Campbell 24 April 1941 — 5 March 2014
Creators: name: Naismith, James H.
Publisher: name: The Royal Society
Year: 2021
Subjects: Cell Biology

description: Iain Campbell defined the study of proteins by nuclear magnetic resonance spectroscopy (NMR) in the UK, and was a towering international figure in biophysics and structural cell biology. His scientific career spanned nearly 50 years, almost entirely spent at the University of Oxford. As a PhD student he recorded electron spin resonance spectra, then later became a pioneer in the application of NMR methodology to whole cells, determining the world's second and UK's first protein structure by NMR. He ended his career as one of the leading scientific lights in integrin adhesion and focal cell assembly. His scientific contributions are characterized by intellectual rigour and a desire to solve the problem by applying the most appropriate tools. All who knew Iain noted his incredible work ethic, his precision and particularly his wry humour. The co-workers trained by Iain form the backbone of protein NMR internationally today, a tribute to his mentorship. His loss was deeply felt by colleagues across the world and of course most of all by his loving family.
The feasible generation of entangled photon states by using linear optical elements
Creators: name: Zou, XuBo
name: Pahlke, K.
name: Mathis, W.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We present a feasible scheme to produce a polarization-entangled photon states $\frac{1}{\sqrt{2}}(|H>|V>+|V>|H>)$ in a controllable way. This scheme requires single-photon sources, linear optical elements and photon detectors. It generates the entanglement of spatially separated photons. The interaction takes place in the photon detectors. We also show that the same idea can be used to produce the entangled $N$-photon state $\frac{1}{\sqrt{2}}(|0,N>+|N,0>)$
description: to appear in PRA
metric-learn: Metric Learning Algorithms in Python
Creators: name: de Vazelhes, William
name: Carey, CJ
name: Tang, Yuan
name: Vauquier, Nathalie
name: Bellet, Aurélien
Publisher: name: arXiv
Year: 2019
Subjects: subject: Machine Learning (cs.LG)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: metric-learn is an open source Python package implementing supervised and weakly-supervised distance metric learning algorithms. As part of scikit-learn-contrib, it provides a unified interface compatible with scikit-learn which allows to easily perform cross-validation, model selection, and pipelining with other machine learning estimators. metric-learn is thoroughly tested and available on PyPi under the MIT licence.
description: GitHub repository: https://github.com/scikit-learn-contrib/metric-learn
Valuing and developing market-based mechanisms for enhanced forest amenities in private lands: The case of Ruka-Kuusamo, Finland
Creators: name: Ovaskainen, V.
name: Mäntymaa, E.
name: Tyrväinen, L.
name: Ovaskainen, V.
name: Mäntymaa, E.
name: Tyrväinen, L.
Publisher: name: Unknown
Year: 2012
Subjects: subject: International Development
subject: Land Economics/Use
subject: Marketing
subject: FOS: Economics and business
subject: environmental benefits
subject: non-timber forest services
subject: choice experiment method
subject: market-based mechanisms

description: Forestry has significant impacts on the quality of the forest landscape for recreation and naturebased tourism. In Finland, the rapid growth of nature-based tourism has expanded outdoor recreation activities from protected areas into timber production forests both in private and public lands, particularly so in northern Finland. This has created a demand for modifying current forest management regimes, especially regeneration practices aimed mainly at timber production. As landscape and recreational benefits mainly represent direct and indirect use values of forests, it is relevant to study the possibilities for creating a direct compensation mechanism between the potential buyers (tourists or tourism entrepreneurs) and providers (forest owners) for such services. In this paper we first describe the main requirements for developing a Landscape and Recreational Values Trading scheme in Finland. Second, we present preliminary results from a recent choice experiment study that investigates foreign and domestic tourists’ demand for and willingness to pay for enhanced forest amenities in private forests of the Ruka-Kuusamo area in northeastern Finland. The results support the idea that tourists are willing to pay for selected improvements in the quality of outdoor recreation environments. Both foreign and domestic tourists were willing to pay for improvements in the quality of the forest landscape, in terms of a less frequent occurrence of clear-cutting and site preparation areas along the routes, as well as for increased biodiversity. Foreign tourists’ willingness to pay was significantly higher than domestic tourists’. Neither group would be willing to pay for extended outdoor recreation routes or increased carbon sequestration, even though reductions in these services might mean a welfare loss.
Chione Robineau-Desvoidy 1830
Creators: name: Evenhuis, Neal L.
name: O'Hara, James E.
name: Pape, Thomas
name: Pont, Adrian C.
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Gentianales
Rubiaceae
Chione

description: 98. Chione Robineau-Desvoidy, 1830: 679.
 ORIGINALLY INCLUDED SPECIES: Chione sepedonoidea Robineau-Desvoidy, 1830 (as “ Chione sepedonoïdea. R. D.”); Chione communis Robineau-Desvoidy, 1830; Chione ichneumonea Robineau-Desvoidy, 1830.
 TYPE SPECIES: Chione sepedonoidea Robineau-Desvoidy, 1830 [= Musca albiseta Scopoli, 1763], by subsequent designation (Rozkošný & Elberg, 1984: 184).
 CURRENT STATUS: Preoccupied by Megerle, 1811; senior (but invalid) synonym of Knutsonia Verbeke, 1964 (subgenus of Ilione Haliday, 1837) [teste Steyskal et al. (2004: 563)].
FAMILY: SCIOMYZIDAE.
description: Published as part of Evenhuis, Neal L., O'Hara, James E., Pape, Thomas & Pont, Adrian C., 2010, 2373, pp. 1-265 in Zootaxa 2373 on page 55
The glueball among the light scalar mesons
Creators: name: Minkowski, Peter
name: Ochs, Wolfgang
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: In our phenomenological analysis of the spectroscopy of light scalar mesons we do not find compelling evidence for the existence of the low mass κ(900) or σ(600) states nor for f_0(1370) as single resonance. If the f_0(980) and and f_0(1500) are taken as members of the q qbar nonet there remains a broad object formed by f_0(400-1200) and f_0(1370) which is a glueball candidate gb(1000).
description: Talk (by W.O.) given at the QCD 02 9th International High-Energy Physics Conference in QuantumChromoDynamics (Montpellier 2-9th July 2002), 4 pages
The nature of the E-B decomposition of CMB polarization
Creators: name: Zaldarriaga, Matias
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present a derivation of the transformation between the Q and U Stokes parameters and the E and B scalar and pseudo-scalar fields. We emphasize the geometrical properties that such transformation must satisfy. We present the E and B decomposition of some simple maps and of a model for a supernova remnant. We discuss the relative amplitudes of the E and B components and argue that for generic random maps E and B should have roughly the same amplitudes.
description: 8 pages, 8 figures
The Distribution of Dark Matter in Galaxies: a Constant-Density Halo around DDO 47
Creators: name: Salucci, P.
name: Walter, F.
name: Borriello, A.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: In this paper we present strong evidence for a core in the density distribution of the dark halo around a (dwarf) galaxy. DDO 47 has a rotation curve that increases linearly from the first data point, at 300 pc, up to to the last one, at 5 kpc. This profile cannot be reproduced unless we consider a dark halo with a flat density core. The optical region of this galaxy is dominated by a homogeneous halo of costant density of ~ 10^{-24} g/cm^3 and a size of ~3 kpc, about twice that of the stellar disk. This result is a formidable case of the inability of standard Lambda Cold Dark Matter scenario to account for the dark mass distribution around galaxies, and points toward the existence of an intriguing halo scale-length. With respect to the recent claim that the "status of CDM on galactic scales" is satisfactorily in agreement with observations (Primack, 2002), this paper adds up to the results of Blais-Ouellette et al. (2002), Trott & Webster (2002), Binney & Evans (2002), de Blok & Bosma (2002), Bottema (2002) in providing evidence that, "succesfull CDM" is instead obliged to implement the "soft core" feature as a general property of the distribution of galactic dark matter.
description: 7 pages, 2 figures. Replaced to match the version in press on A&A
High-resolution mapping of abasic sites and pyrimidine modifications in DNA
Creators: name: Liu, Zheng
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: DNA damage
abasic sites
epigenetics
5-hydroxymethyluracil
uracil

description: The maintenance of genomic stability is critical for the growth and survival of cells. Cellular DNA is constantly subject to both endogenous and exogenous sources of damage, leading to the formation of damage products. Abasic sites occur when a nucleobase is lost from DNA by hydrolysis and can lead to mutations and genomic instability. This thesis focuses on the development and application of methodology to map the location of abasic sites in DNA by next-generation sequencing. Chemically, abasic sites are reactive entities due to the aldehyde moiety in the ring-open form of the deoxyribose. Many studies on abasic sites have focused on targeting this aldehyde, however, a major drawback to this approach is the cross-reactivity of nucleophilic probes with other aldehyde-containing modifications that naturally occur within genomic DNA. In this thesis, a chemical method was developed and demonstrated to allow the sequencing of abasic sites at single-nucleotide resolution by affinity enrichment. Crucially, this method was shown to selectively target abasic sites in the presence of other reactive sites in DNA. Glycosylase enzymes excise base modifications from DNA to generate an abasic site. By treating isolated DNA with a glycosylase in vitro, abasic site sequencing methodology can be widely applied to study a range of DNA base modifications. This approach was utilised to investigate the distribution of the modification 5-hydroxymethyluracil at single-nucleotide resolution in the DNA of trypanosomatids. This study provided proof-of-concept of the sequencing methodology in a genomic context and also revealed the genomic features and sequence motifs at which these sites accumulate. The distribution of endogenous abasic sites was also explored in the human genome. The genomic location of abasic sites was mapped following depletion of the key repair enzyme, APE1, where an increase was observed in the number of enriched loci compared to control cells. A relationship was also revealed between this form of DNA damage and coding and regulatory regions of the genome upon knockdown of the APE1 protein. The genomic location of the base modification uracil was studied in the mouse genome. This base has been implicated in a pathway proposed to regulate the epigenetic DNA marker, 5-methylcytosine during embryonic development. Sequencing of uracil was achieved by enzymatic conversion into abasic sites followed by genome-wide mapping to investigate the extent to which the proposed mechanism contributes towards epigenetic reprogramming. Overall, a versatile method has been developed that can reveal the location of endogenous abasic sites within DNA at single-nucleotide resolution, as well as abasic sites generated in vitro from base modifications. This method is useful for studies on both DNA damage and DNA base modifications.
The Missing Link in Gravitational-Wave Astronomy: Discoveries waiting in the decihertz range
Creators: name: Sedda, Manuel Arca
name: Berry, Christopher P. L.
name: Jani, Karan
name: Amaro-Seoane, Pau
name: Auclair, Pierre
name: Baird, Jonathon
name: Baker, Tessa
name: Berti, Emanuele
name: Breivik, Katelyn
name: Burrows, Adam
name: Caprini, Chiara
name: Chen, Xian
name: Doneva, Daniela
name: Ezquiaga, Jose M.
name: Ford, K. E. Saavik
name: Katz, Michael L.
name: Kolkowitz, Shimon
name: McKernan, Barry
name: Mueller, Guido
name: Nardini, Germano
name: Pikovski, Igor
name: Rajendran, Surjeet
name: Sesana, Alberto
name: Shao, Lijing
name: Tamanini, Nicola
name: Vartanyan, David
name: Warburton, Niels
name: Witek, Helvi
name: Wong, Kaze
name: Zevin, Michael
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: The gravitational-wave astronomical revolution began in 2015 with LIGO's observation of the coalescence of two stellar-mass black holes. Over the coming decades, ground-based detectors like LIGO will extend their reach, discovering thousands of stellar-mass binaries. In the 2030s, the space-based LISA will enable gravitational-wave observations of the massive black holes in galactic centres. Between LISA and ground-based observatories lies the unexplored decihertz gravitational-wave frequency band. Here, we propose a Decihertz Observatory to cover this band, and complement observations made by other gravitational-wave observatories. The decihertz band is uniquely suited to observation of intermediate-mass ($\sim 10^2$-$10^4 M_\odot$) black holes, which may form the missing link between stellar-mass and massive black holes, offering a unique opportunity to measure their properties. Decihertz observations will be able to detect stellar-mass binaries days to years before they merge and are observed by ground-based detectors, providing early warning of nearby binary neutron star mergers, and enabling measurements of the eccentricity of binary black holes, providing revealing insights into their formation. Observing decihertz gravitational-waves also opens the possibility of testing fundamental physics in a new laboratory, permitting unique tests of general relativity and the Standard Model of particle physics. Overall, a Decihertz Observatory will answer key questions about how black holes form and evolve across cosmic time, open new avenues for multimessenger astronomy, and advance our understanding of gravitation, particle physics and cosmology.
description: 52 pages, 5 figures, 4 tables. Submitted to Classical & Quantum Gravity. Based upon a white paper for ESA's Voyage 2050 on behalf of the LISA Consortium 2050 Task Force
Additional file 2 of The evolution and future of diabetic kidney disease research: a bibliometric analysis
Creators: name: Wei, Yi
name: Jiang, Zongpei
Publisher: name: figshare
Year: 2021
Subjects: Biochemistry
Medicine
Chemical Sciences not elsewhere classified
Marine Biology
Science Policy

description: Additional file 2: Figure S2. The evolution of topics in DKD research. The distributions of the topics RAAS (A), OS (B), AGEs and RAGE (C), miR (D), podocyte (E), inflammation (F), metabolism (G), TF (H), SGLT-2 and GLP-1 (I), VEGF (J), T1DM (K), CTCF (L), TGF-β (M), fibroblast (N) and BP (O) in different time periods reflect the evolution of topics in DKD research.
Chlorophora Robineau-Desvoidy 1830
Creators: name: Evenhuis, Neal L.
name: O'Hara, James E.
name: Pape, Thomas
name: Pont, Adrian C.
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Richardiidae
Chlorophora

description: 101. Chlorophora Robineau-Desvoidy, 1830: 733.
 ORIGINALLY INCLUDED SPECIES: Chlorophora liturata Robineau-Desvoidy, 1830.
 TYPE SPECIES: Chlorophora liturata Robineau-Desvoidy, 1830, by monotypy.
CURRENT STATUS: Placed in “Unplaced Genera” by Steyskal (1968a: 13).
FAMILY: RICHARDIIDAE.
 REMARKS: According to Hendel (1911a: 369, 1911b: 31), Chlorophora Robineau-Desvoidy, 1830 may be synonymous with Odontomera Macquart, 1843. If so, then Chlorophora would have priority and might upset stability of the more commonly used genus-group name Odontomera.
description: Published as part of Evenhuis, Neal L., O'Hara, James E., Pape, Thomas & Pont, Adrian C., 2010, 2373, pp. 1-265 in Zootaxa 2373 on page 56
Photon number conservation and photon interference
Creators: name: Koniorczyk, Matyas
name: Janszky, Jozsef
Publisher: name: arXiv
Year: 2001
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The group theoretical aspect of the description of passive lossless optical four-ports (beam splitters) is revisited. It is shown through an example, that this approach can be useful in understanding interferometric schemes where a low number of photons interfere. The formalism is extended to passive lossless optical six-ports, their SU(3)-theory is outlined.
description: Contribution at "Classical and Quantum Interference" workshop in RCO, Olomouc, Oct. 25-26 2001. A corrected version
Role of governmental and local policy in forest degradation and sediment transportation to the Caspian Sea
Creators: name: Poorzady, M.
name: Poorzady, M.
Publisher: name: Unknown
Year: 2012
Subjects: Agricultural and Food Policy
Environmental Economics and Policy
Land Economics/Use

description: Forests protect water quality by slowing runoff, stabilizing soils and filtering pollutants. Conversion of forest land to other uses interrupts these natural processes and increases the potential for water quality impairment. Since soil erosion and sediment redistribution have implications for both soil and water resources, and scientists have established that the movements of soil, sediment and water are intrinsically linked, it is critical to implement integrated resource protection strategies. It is therefore, encouraging that policy maker and managers are now opting to manage soil erosion and sediment transfers at a catchment or river basin scale, as has been proposed in the Eu water framework directive, for example. Excessive or enhanced soil erosion due to poor land management can result in both on and off-site impacts that are detrimental to a whole range of receptors. Erosion, transport and sedimentation processes gain increasingly importance in socio – economical and ecological respect. This study seeks to survey the role of forest degradation and land use changes in soil erosion and ultimately sediment transportation by rivers. Based on problem-solving logic, it is possible to drive a five stage model of policy cycle which is consisting of: agenda setting, policy formulation, decision making, policy implementation and policy evaluation. The overarching objective of this thesis is to determine what strategies and policies need to be implemented in order to decrease the treatments arising from sediment transition into the Caspian Sea. In addition, this study seeks to examine the relationship between the extent of Hyrcanian forest degradation and the extent of sediments arising from both degradation and soil erosion which are transported to the Caspian Sea.
Thermodynamics and statistical physics of quasiparticles within the quark-gluon plasma model
Creators: name: Dzhunushaliev, V.
name: Folomeev, V.
name: Ramazanov, T.
name: Kozhamkulov, T.
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We consider thermodynamic properties of a quark-gluon plasma related to quasiparticles having the internal structure. For this purpose, we employ a possible analogy between quantum chromodynamics and non-Abelian Proca-Dirac-Higgs theory. The influence of characteristic sizes of the quasiparticles on such thermodynamic properties of the quark-gluon plasma like the internal energy and pressure is studied. Sizes of the quasiparticles are taken into account in the spirit of the van der Waals equation but we take into consideration that the quasiparticles have different sizes, and the average value of these sizes depends on temperature. It is shown that this results in a change in the internal energy and pressure of the quark-gluon plasma. Also, we show that, when the temperature increases, the average value of characteristic sizes of the quasiparticles increases as well. This leads to the occurrence of a phase transition at the temperature at which the volume occupied by the quasiparticles is compared with the volume occupied by the plasma.
description: 11 pages, 10 figures
Exact Ground State of Lieb-Mattis Hamiltonian as a Superposition of Néel states
Creators: name: Rademaker, Louk
Publisher: name: arXiv
Year: 2019
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Other Condensed Matter (cond-mat.other)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: We show that the exact ground state of the Lieb-Mattis Hamiltonian is an equal-weight superposition of all possible classical Néel states, and provide an exact formulation of this superposition in the $z$-spin basis for both $S=1/2$ and general $S$ using Schwinger bosons. In general, a superposition of possible rotations on a general initial state is symmetric if and only if the initial state has a nonzero overlap with a singlet state and is otherwise made up of states that vanish due to the symmetrization. Most notably, $|s, m=0 \rangle$ states will vanish if symmetrized, which explains how a superposition of Néel states projects onto its singlet component.
description: 7 pages
Inverse Dynamic Game Methods for Identification of Cooperative System Behavior
Creators: name: Inga Charaja, Juan Jairo
Publisher: name: KIT Scientific Publishing
Year: 2021
Subjects: optimale Regelung
dynamische Spieltheorie
kooperative Systeme
Identifikation
optimal control
dynamic game theory
cooperative systems
identification

description: This work addresses inverse dynamic games, which generalize the inverse problem of optimal control, and where the aim is to identify cost functions based on observed optimal trajectories. The identified cost functions can describe individual behavior in cooperative systems, e.g. human behavior in human-machine haptic shared control scenarios.
Convolutional Neural Networks for Direct Detection of Dark Matter
Creators: name: Khosa, Charanjit K.
name: Mars, Lucy
name: Richards, Joel
name: Sanz, Veronica
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: The XENON1T experiment uses a time projection chamber (TPC) with liquid Xenon to search for Weakly Interacting Massive Particles (WIMPs), a proposed Dark Matter particle, via direct detection. As this experiment relies on capturing rare events, the focus is on achieving a high recall of WIMP events. Hence the ability to distinguish between WIMP and the background is extremely important. To accomplish this, we suggest using Convolutional Neural Networks (CNNs); a Machine Learning procedure mainly used in image recognition tasks. To explore this technique we use XENON collaboration open-source software to simulate the TPC graphical output of Dark Matter signals and main backgrounds. A CNN turns out to be a suitable tool for this purpose, as it can identify features in the images that differentiate the two types of events without the need to manipulate or remove data in order to focus on a particular region of the detector. We find that the CNN can distinguish between the dominant background events (ER) and 500 GeV WIMP events with a recall of 93.4\%, precision of 81.2\% and an accuracy of 87.2\%.
description: 17 figures, 4 tables (matches the published version)
Optimal rotation with differently-discounted benefit streams
Creators: name: Price, C.
name: Price, C.
Publisher: name: Unknown
Year: 2012
Subjects: Environmental Economics and Policy

description: Several reasons have been given to justify discount rates which decline through time. The expected and computed result is a sequence of progressively lengthening rotations. Reasons have also been given why different kinds of benefit (or cost) might be discounted at different rates: in particular, carbon fluxes. A similar lengthening sequence of rotations then invariably arises, whether the benefits are consumptive ones realised at the rotation end, or nonconsumptive ones whose annual value increases through the rotation. (Constant annual benefits have no effect on rotation, irrespective of discount rate.) The factors which justify different discount rates for different kinds of benefit do not lead to the dynamic inconsistency that arises when discount rates differ according to the length of the discounting period.
Exact and Monte Carlo study of adsorption of a self-interacting polymer chain for a family of three-dimensional fractals
Creators: name: Elezovic-Hadzic, S.
name: Zivic, I.
name: Milosevic, S.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We study the problem of adsorption of self-interacting linear polymers situated in fractal containers that belong to the three-dimensional (3d) Sierpinski gasket (SG) family of fractals. Each member of the 3d SG fractal family has a fractal impenetrable 2d adsorbing surface (which is, in fact, 2d SG fractal) and can be labelled by an integer $b$ ($2\le b\le\infty$). By applying the exact and Monte Carlo renormalization group (MCRG) method, we calculate the critical exponents $ν$ (associated with the mean squared end-to-end distance of polymers) and $ϕ$ (associated with the number of adsorbed monomers), for a sequence of fractals with $2\le b\le4$ (exactly) and $2\le b\le40$ (Monte Carlo). We find that both $ν$ and $ϕ$ monotonically decrease with increasing $b$ (that is, with increasing of the container fractal dimension $d_f$), and the interesting fact that both functions, $ν(b)$ and $ϕ(b)$, cross the estimated Euclidean values. Besides, we establish the phase diagrams, for fractals with $b=3$ and $b=4$, which reveal existence of six different phases that merge together at a multi-critical point, whose nature depends on the value of the monomer energy in the layer adjacent to the adsorbing surface.
description: 28 pages, 6 figures
Rising carbon flux price and the paradox of forest-induced reduction of atmospheric carbon stock
Creators: name: Price, C.
name: Price, C.
Publisher: name: Unknown
Year: 2012
Subjects: Environmental Economics and Policy

description: Reasons can be given, on both supply and demand grounds, why the price of a carbon flux into or out of the atmosphere might rise through time: such predictions are now embedded in the calculations mandated by some governments. A productive forestry cycle entails both early sequestration (at low prices) and late volatilisation (at high prices) of carbon. Hence a productive cycle might be deemed “loss-making” on its carbon account, even though in every future time period its effect on atmospheric carbon stock is beneficial. While this effect might be mitigated or reversed by discounting of carbon flux values, in practice there is debate about whether such values should be discounted at all. In addition, arbitrary governmental rules on what kinds of carbon flux “count” can make forest utilisation which is carbon-positive within the whole materials system appear to be carbon negative, an anomaly which is exacerbated by rising carbon price.
MOESM20 of Looking beyond appearances: a multi-analytical approach on the prehistoric clay weights
Creators: name: Manea, Bogdan
name: Lechintan, Mircea
name: Popescu, Gabriel
name: Ignat, Theodor
name: Opriş, Vasile
name: Constantin, Florin
name: Mădălina Dimache
name: Parnic, Valentin
name: Bugoi, Roxana
name: Cătălin Lazăr
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Additional file 20: Table S17. XCT-scan analysis interpretation of voids for the clay weights sample.
Assessing the socio-cultural impacts of biodiversity cooperation networks of the METSO programme
Creators: name: Rantala, M.
name: Hujala, T.
name: Kurttila, M.
name: Rantala, M.
name: Hujala, T.
name: Kurttila, M.
Publisher: name: Unknown
Year: 2012
Subjects: subject: Environmental Economics and Policy
subject: Land Economics/Use
subject: additive utility model
subject: expert judgements
subject: sustainability impact assessment

description: To safeguard overall sustainability in forest conservation it is necessary to consider ecological, economic, social, and cultural viewpoints simultaneously. However, particularly the sociocultural aspects are difficult to measure and thus often poorly considered. Furthermore, practical decision-making requires that sustainability assessments are as easy and simple as possible. This study sought to develop and test a practically feasible procedure for measuring and monitoring the socio-cultural impacts of the biodiversity cooperation networks within the Forest Biodiversity Programme METSO. Fundamentally, the procedure falls within a multi-criteria decision support (MCDS) framework. First, a literature review helped to select and operationalize a set of 10 criteria and 25 indicators. Second, empirical data for the indicators were gathered from seven cooperation networks in November 2010 and January 2012 with email questionnaires. Applying the indicator data to an additive utility model yielded cumulative utility scores for all networks and for both operational years. According to the results, improvements from 2010 to 2011 took place particularly within the indicator “Achievement of innovation and new operation models”. Generally, the best performances appeared under the criterion “Acceptability”. The high (positive) total socio-cultural impacts can be achieved through different strategies: by gathering sub-utility from all criteria with rather equal weights or by concentrating on a few locally important criteria with higher weights. The presented procedure enables longitudinal monitoring of socio-cultural sustainability, which is beneficial, because some outcomes of actions appear with a delay. The method may help to compare the networks’ sub-utility distributions, i.e., performance profiles, which provides valuable information for policy-makers. However, it is noteworthy that some indicators rely on subjective expert judgements, which is why direct comparisons between networks should be done with caution. Following task is to link or merge the monitoring of socio-cultural impacts with other dimensions of sustainability.
The Far East and Oceania Agricultural Situation: Midyear Review
Creators: name: Far East Branch, Foreign Regional Analysis Division
name: Far East Branch, Foreign Regional Analysis Division
Publisher: name: Unknown
Year: 1967
Subjects: Agricultural and Food Policy
Crop Production/Industries
International Development
International Relations/Trade
Livestock Production/Industries

description: Includes: Afghanistan, Australia, Burma, Ceylon, Hong Kong, India, Indonesia, Japan, Mainland China, Malaysia and Singapore, New Zealand, Pakistan, Philippines, South Korea, South Viet Nam, Taiwan, and Thailand
First-Principles study of an S = 1 quasi-1D quantum molecular magnetic material
Creators: name: Yazback, Maher
name: Yu, Jie-Xiang
name: Liu, Shuanglong
name: Zhang, Long
name: Sullivan, Neil S.
name: Cheng, Hai-Ping
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We use density functional theory to study the structural, magnetic and electronic structure of the organo-metallic quantum magnet $\mathrm{NiCl_2-4SC(NH_2)_2}$ (DTN). Recent work has demonstrated the quasi-1D nature of the molecular crystal and its quantum phase transitions at low temperatures. This includes a magneto-electric coupling and, when doped with Br, the presence of an exotic Bose-glass state. We systematically show that, by using the generalized gradient approximation (GGA) with inclusion of a van der Waals term to account for weak inter-molecular forces and by introducing a Hubbard $U$ term to the total energy, our calculations reproduce the magnetic anisotropy, the inter-molecular exchange coupling strength and the magneto-electric effect in DTN, which were observed in previous experiments. Further analysis into the electronic structure gives insight into the underlying magnetic interactions, including what mechanisms may be causing the ME effect. Using this computationally efficient model, we predict what effect applying an electric field might have on the magnetic properties of this quantum magnet.