cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 2 of Adaptive designs undertaken in clinical research: a review of registered clinical trials
Creators: name: Hatfield, Isabella
name: Allison, Annabel
name: Flight, Laura
name: Julious, Steven
name: Munyaradzi Dimairo
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy

description: Table of summary statistics. PDF containing a table of summary statistics by phase and funder type. Counts and percentages are presented for categorical variables whilst medians and interquartile ranges are presented for continuous variables. (PDF 19.5 kb)
Additional file 1: Table S1. of Evaluating the neonatal BCG vaccination programme in Ireland
Creators: name: Usher, Cara
name: Adams, Roisin
name: Schmitz, Susanne
name: Kieran, Jennifer
name: OâFlanagan, Darina
name: OâDonnell, Joan
name: Connolly, Kevin
name: Corcoran, Brenda
name: Butler, Karina
name: Barry, Michael
name: Walsh, Cathal
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Resource utilisation and unit cost data for the direct cost estimate for an episode of latent TB (LTBI). (PDF 93Â kb)
Granzyme B in abdominal aortic aneurysm and aortic dissection
Creators: name: Chamberlain, Ciara M.
Publisher: name: University of British Columbia
Year: 2009

description: An aneurysm is a permanent focal dilatation of an artery, often associated with atherosclerosis and with a weakening of the vessel wall. An arterial dissection is when a tear in the inner layer of the blood vessel causes blood to flow between the layers and force the blood vessel apart. Aneurysms or dissections can result in rupturing of the vessel, leading to excessive hemorrhaging and death if not immediately repaired. Granzyme B (GrB) is a protein that is expressed and secreted by cytotoxic immune cells. GrB has been identified as a key player in atherosclerosis both in the induction of apoptosis in target cells and the degradation of extracellular matrix proteins. We generated GrB/apolipoprotein E (apoE) double knockout (GrB/apoE-DKO) mice, and have shown that advanced atherosclerosis is significantly reduced in GrB/apoE-DKO mice as compared to apoE-KO mice. Evaluation of elastin staining indicated a loss of elastic tissue and medial thinning in the aortas of apoE-KO mice that was restored when GrB was absent in the GrB/apoE-DKO mice. Since medial thinning renders the aorta wall more susceptible to aneurysms or dissections, we hypothesize that the absence of GrB will reduce the incidence of aneurysm formation and dissection in GrB/apoE-DKO mice as compared to apoE-KO mice during angiotensin II (angli) infusion. To induce aortic dissections, 3-month-old C57 (wildtype), apoE-KO, and GrB/apoE-DKO mice were implanted with an osmotic mini pump which released a dose of 1000ng/kg/min of angli (or saline as a control) for 28 days. The mice were euthanized at 28 days, and the aortas were removed and evaluated for gross morphology and, after cross sectional staining, for histopathological lesions. A significant reduction in aortic dissections and aneurysms was observed in GrB/apoE-DKO mice as compared to apoE-KO mice treated with angII. Further, GrB deficiency corresponds to a significant increase in survival at the 28 day time-point. Aneurysms and dissections were not observed in the saline-treated groups or the angli-treated wild-type controls. In conclusion, our studies suggest that GrB contributes to the loss of vessel wall integrity and to the occurrence of aortic aneurysm and dissection.
Additional file 1: Figure S1. of Deep sequencing of the uterine immune response to bacteria during the equine oestrous cycle
Creators: name: Marth, Christina
name: Young, Neil
name: Glenton, Lisa
name: Noden, Drew
name: Browning, Glenn
name: Krekeler, Natali
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Flow chart outlining the study design, time points of E. coli inoculations and collection of uterine samples. Three horses were assigned to group 1 and two to group 2. (PDF 12 kb)
Additional file 8: Figure S3. of Muscleblind-like 1 is required for normal heart valve development in vivo
Creators: name: Coram, Ryan
name: Stillwagon, Samantha
name: Guggilam, Anuradha
name: Jenkins, Michael
name: Swanson, Maurice
name: Ladd, Andrea
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: Scoring system for heart valve pigmentation. To evaluate the extent of pigmentation of the valves, a scoring system was developed in which each valve was given a score of 0 (no melanin), 1 (sparse melanin), 2 (moderate melanin), or 3 (abundant melanin). Representative inflow and outflow valves for each category are shown. (PDF 3893Â kb)
The measurement of water in the tariff for Canadian dairy products
Creators: name: Zhang, Lejiu
Publisher: name: University of British Columbia
Year: 2009

description: Canadian dairy market has been highly protected by the Federal Government for several decades. The current situation is the over-quota tariffs of dairy products are extremely high. However, it is possible to anticipate that this high over-quota tariff will be reduced in the future WTO negotiations. This paper tries to answer by how much tariff can be cut and still maintain protection from imports for the domestic dairy industry. This is also equivalent to test how much water in the tariff (WIT) for dairy products. The time series dairy products wholesale prices data of Canada and the world are used in the calculations. The methodologies are introduced in this paper to estimate WIT for four dairy products including butter, skim milk powder, cheddar and fluid milk (2% fat). In addition, I define the potential WIT and measure that by using adjusted Canadian wholesale price (equaling US dairy processor’s market margin plus Canadian farm milk cost). In addition, how much WIT and potential WIT in the coming decade (2008-2017) are forecasted according to the predicted prices. The results show that there are large amounts of water in the Canadian over-quota tariffs in the period of 1996-2017, they vary across dairy products and over time. Finally, the policy recommendations have been made on the question of how much percent of the over-quota tariff can be reduced without increasing imports in the coming decade when the international prices are stochastic but their development trends are certain.
Additional file 3: Figure S2. of Epithelial-mesenchymal transition induction is associated with augmented glucose uptake and lactate production in pancreatic ductal adenocarcinoma
Creators: name: Menghan Liu
name: Lake-Ee Quek
name: Sultani, Ghazal
name: Turner, Nigel
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Plant Biology
subject: Computational Biology

description: Steady state yield estimates generated from 13C enrichment data of intracellular metabolites using OpenFLUX. (DOCX 358Â kb)
Additional file 3: Figure S3. of Patterns of failure after use of 18F-FDG PET/CT in integration of extended-field chemo-IMRT and 3D-brachytherapy plannings for advanced cervical cancers with extensive lymph node metastases
Creators: name: Yih-Lin Chung
name: Horng, Cheng-Fang
name: Pei-Ing Lee
name: Fong-Lin Chen
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: PET-guided RT planning for a locally bulky FIGO IB2 cervical cancer with multiple FDG-avid pelvic-only nodes. The relatively different intensity of standardized uptake values (SUVs) of 18 F-FDG PET were used to delineate HR- and IR-clinical target volumes (CTVs) ((high risk defined as SUVs of 4.5 greater at the delayed phase and intermediate risk defined as SUVs of 2.5–4.5 at the delayed phase). A representative of fusion between pre-therapy PET and post-implantated CT scans at time of the 1st brachytherapy after concurrent chemoradiation of 4500 cGy with one tandem and two ovoid applicators inserted into the uterus and vaginal fornix, respectively. The 3D RT, IMRT and brachytherapy doses are transformed to EQD2 (equivalent dose of 2-Gy fraction) for combination. Adding to external beam radiation, the brachytherapy planning aimed to deliver a minimum of total EQD2 85 Gy to 90 % of the HR/IR-CTVs in 5 fractions (Frs). HR-CTV: FDG-avid dark color; IR-CTV: FDG-avid light color; B, FDG-avid bladder. Note that the green, red and yellow arrows indicate the area only receiving external beam radiation, the junction of IMRT and brachytherapy, and the overlapping of IMRT and brachytherapy, respectively. There is yet no optimization method to match the dose junction between IMRT and brachytherapy. (DOC 399 kb)
Additional file 1: Table S1. of Measuring time utilization of pharmacists in the Birmingham Free Clinic dispensary
Creators: name: Fisher, Arielle
name: Ding, Michael
name: Hochheiser, Harry
name: Douglas, Gerald
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Complete list of task subcategories, their definitions, initiation/termination protocol, and value categorizations (DOCX 75 kb)
Additional file 3: Table S3. of Evaluating the neonatal BCG vaccination programme in Ireland
Creators: name: Usher, Cara
name: Adams, Roisin
name: Schmitz, Susanne
name: Kieran, Jennifer
name: OâFlanagan, Darina
name: OâDonnell, Joan
name: Connolly, Kevin
name: Corcoran, Brenda
name: Butler, Karina
name: Barry, Michael
name: Walsh, Cathal
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Resource utilisation and unit cost data for the direct cost estimate for an episode of extrapulmonary TB. (PDF 122Â kb)
Tylostoma Sharpe 1849
Creators: name: Hansen, Thomas
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Littorinimorpha
Tylostomatidae
Tylostoma

description: Tylostoma? sp.
Fig. 26N
Material. MGUH 33172 and a fragmentary internal mould in the same sample.
Occurrence. The lower Danian ‘dead layer’ in Dania Quarry, Northern Jutland.
Description. Shell large, strongly rounded in outline with a low spire and spire whorls. The most complete specimen MGUH 33172 shows signs of an internal raised band just abapical of periphery. Aperture moderately narrow with no sign of teeth or varices on outer lip or parietal region.
Remarks. The material is very fragmentary and does not allow for a confident generic assignment, but it shows a strong resemblance to Tylostoma, and here especially the middle Danian T. ampullariaeforme Ravn, 1902 from Denmark. It differs from this species by having a lower spire and a narrower aperture.
description: Published as part of Hansen, Thomas, 2019, Gastropods from the Cretaceous-Palaeogene boundary in Denmark, pp. 1-196 in Zootaxa 4654 (1) on page 102, DOI: 10.11646/zootaxa.4654.1.1, http://zenodo.org/record/3365803
Additional file 6: Table S1. of Patterns of failure after use of 18F-FDG PET/CT in integration of extended-field chemo-IMRT and 3D-brachytherapy plannings for advanced cervical cancers with extensive lymph node metastases
Creators: name: Yih-Lin Chung
name: Horng, Cheng-Fang
name: Pei-Ing Lee
name: Fong-Lin Chen
Publisher: name: Figshare
Year: 2016
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Plant Biology
subject: FOS: Biological sciences
subject: Computational Biology

description: Clinical characteristics and distribution of treatment modalities of 564 consecutive cervical cancer patients without visceral metastasis diagnosed in1990-2010. (DOC 38Â kb)
Additional file 2: Figure S1. of Epithelial-mesenchymal transition induction is associated with augmented glucose uptake and lactate production in pancreatic ductal adenocarcinoma
Creators: name: Menghan Liu
name: Lake-Ee Quek
name: Sultani, Ghazal
name: Turner, Nigel
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Molecular Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Cancer

description: Wound healing assay images for Fig.Â 1f. (DOCX 447Â kb)
Thylacodes Guettard 1770
Creators: name: Hansen, Thomas
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Littorinimorpha
Vermetidae
Thylacodes

description: Thylacodes? sp.
Figs 27 K–M
Material. Specimen MGUH 33191 is a fragmentary 2.4 mm wide external mould.
Occurrence. Thylacodes? sp. was collected from the top of the Maastrichtian Tor Formation at Holtug Quarry, Stevns Klint.
Description. Shell low turbiniform, sinistral with flattened apex seemingly attached to a slender bryozoan branch. Protoconch heterostrophic, consisting of two whorls on which no microsculpture can be observed. Teleoconch whorls expanding slowly, flattened on adapical side, becoming more convex on lateral and abapical side. Adapical side of whorls with strong transverse ribs curving from the adapical suture and backwards into an initially indistinct, but progressively deeper sinus situated halfway between sutures; transverse ribs continue forward and down to the periphery of the last whorl, where they are replaced rather abruptly by seven moderately coarse spiral ribs. Transverse rib number per half-whorl approximating 15 on third whorl.
Remarks. Thylacodes? sp. differs from T. contendis n. sp. described above by the sinistral coiling and a coarser transverse ribbing. This may though just reflect ecophenetic differences within the species; especially as only a single specimen is known of the present taxon.
description: Published as part of Hansen, Thomas, 2019, Gastropods from the Cretaceous-Palaeogene boundary in Denmark, pp. 1-196 in Zootaxa 4654 (1) on page 108, DOI: 10.11646/zootaxa.4654.1.1, http://zenodo.org/record/3365803
Additional file 1: Figure S1. of Patterns of failure after use of 18F-FDG PET/CT in integration of extended-field chemo-IMRT and 3D-brachytherapy plannings for advanced cervical cancers with extensive lymph node metastases
Creators: name: Yih-Lin Chung
name: Horng, Cheng-Fang
name: Pei-Ing Lee
name: Fong-Lin Chen
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Molecular Biology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Plant Biology
subject: FOS: Biological sciences
subject: Computational Biology

description: Two Parallel Staging Systems for Advanced Cervical Cancer. (DOC 4920Â kb)
Laxispira Gabb 1877
Creators: name: Hansen, Thomas
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Neotaenioglossa
Turritellidae
Laxispira

description: Genus Laxispira Gabb, 1877
Type species. Laxispira lumbricalis Gabb, 1877 (type by monotypy). Cretaceous, New Jersey, USA.
description: Published as part of Hansen, Thomas, 2019, Gastropods from the Cretaceous-Palaeogene boundary in Denmark, pp. 1-196 in Zootaxa 4654 (1) on page 110, DOI: 10.11646/zootaxa.4654.1.1, http://zenodo.org/record/3365803
Additional file 1: of Pro-epileptogenic effects of viral-like inflammation in both mature and immature brains
Creators: name: Dupuis, Nina
name: Mazarati, Andrey
name: Desnous, Béatrice
name: Vibol Chhor
name: Fleiss, Bobbi
name: Charpentier, Tifenn Le
name: Lebon, Sophie
name: Csaba, Zsolt
name: Gressens, Pierre
name: Dournaud, Pascal
name: Auvin, Stéphane
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Evolutionary Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: Blood cytokine levels 24 h after PIC injection measured by Multiplex cytokine assay. Cytokines profile (IL1β, IL6, IL10, TNFα) in the blood 24 h after intrahippocampal injection (saline i.h (white bar) or PIC i.h. (10 μg/rat) (black bar) in P14 and in P75 rats. Data are presented as mean ± SEM. We did not find any difference between the groups. (DOCX 9451 kb)
Focused attention and heart rate during exploratory play in healthy preterm and term-born infants
Creators: name: Petrie Thomas, Julianne
Publisher: name: University of British Columbia
Year: 2009

description: Infant attention is central to early development. Previous research has linked focused attention during infant exploratory play to preschool cognition. Importantly, focused attention and information processing have been related to sustained decreases in heart rate (HR), which show developmental changes in infancy. Few studies have examined the relationship between focused attention, heart rate and development in very preterm infants, who are vulnerable to cognitive and attention problems. Participants were 35 extremely low gestational age (ELGA; ≤28 weeks), 48 very low gestational age (VLGA; 29-32 weeks) and 46 healthy term-born infants seen at 8- months corrected age. Focused attention was timed and global focused attention was rated using a toy exploration paradigm. Heart rate was recorded continuously during attention testing. Mean HR and heart rate variability (HRV) were assessed during infant exploration. Additionally, change in mean HR for all focused episodes, and the mean and greatest HR change for the peak focus were calculated. Bayley Scales of Infant Development (BSID-II, Mental Development Index [MDI]) were administered. Term-born infants were rated higher on global focused attention than VLGA, and marginally higher than ELGA infants. For all infants, greater HRV suppression during exploration and magnitude ofHR deceleration during the peak focus were related to greater attentiveness. No group differences were seen in HRV suppression. However, ELGA infants showed greater HR deceleration during focused attention compared to VLGA and Term-born infants. Furthermore, after controlling for perinatal risk, infant peak focus and degree of HR deceleration predicted 8-month MDI for the ELGA (49% of the total variance), but not VLGA infants. This may reflect enhanced attentional effort to compensate for information processing deficits among the highest risk infants. These findings extend research on attention and heart rate during exploratory play to understanding the links between attention regulation, heart rate and cognitive development in very preterm infants. Further knowledge in this area will facilitate the development of effective methods to identify infants very early in life who are at-risk for attention and cognitive problems, and may lead to interventions that can improve developmental outcomes for vulnerable infants.
Additional file 4: Figure S4. of Patterns of failure after use of 18F-FDG PET/CT in integration of extended-field chemo-IMRT and 3D-brachytherapy plannings for advanced cervical cancers with extensive lymph node metastases
Creators: name: Yih-Lin Chung
name: Horng, Cheng-Fang
name: Pei-Ing Lee
name: Fong-Lin Chen
Publisher: name: Figshare
Year: 2016
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Developmental Biology
subject: Cancer
subject: Plant Biology
subject: FOS: Biological sciences
subject: Computational Biology

description: PET imaging aids in target volume delineation for radiotherapy (RT) planning in a FIGO IIIB cervical cancer patient with extensive lymph node metastases in the pelvic and para-aortic areas. (A) External beam planning. A representative RT treatment plan includes the combination of an initial 4-field box technique (4500 cGy/25 frs) to the whole pelvis and para-aortic area with a subsequent IMRT boost with central pelvic sparing (900 cGy/5 frs) to the PET-detected lymph node basisn and parametria, and a final IGRT boost to the high SUV lymph nodes (720 cGy/4 frs). (B) PET-based intracavitary 3D brachytherapy planning to deliver at least 500 cGy to 90 % of the PET-definied HR-CTV (as SUVs of 4.5 greater at the delayed phase) and IR-CTV (as SUVs of 2.5–4.5 at the delayed phase). The dark yellow arrow indicates a double-J in the right hydroureter. Ure, ureter; B, bladder; R, rectum; Si, sigmoid. (DOC 448 kb)
MOESM4 of Integrated omics approaches provide strategies for rapid erythromycin yield increase in Saccharopolyspora erythraea
Creators: name: Karničar, Katarina
name: Drobnak, Igor
name: Petek, Marko
name: Magdevska, Vasilka
name: Horvat, Jaka
name: Vidmar, Robert
name: Špela Baebler
name: Rotter, Ana
name: Jamnik, Polona
name: Štefan Fujs
name: Turk, Boris
name: Fonovič, Marko
name: Gruden, Kristina
name: Kosec, Gregor
name: Petković, Hrvoje
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Plant Biology
subject: Computational Biology

description: Additional file 4. A table for validation of microarray data by qPCR.
Laxispira Gabb 1877
Creators: name: Hansen, Thomas
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Neotaenioglossa
Turritellidae
Laxispira

description: Laxispira sp.
Fig. 27O
Material. MGUH 33193, an external mould in the unformally catalogued sample SH.3.B–C, and a last mould without number in the old collections at the Natural History Museum of Denmark.
Occurrence. Lithified top of the Maastrichtian Tor Formation at Højerup Church and Holtug Quarry, Stevns.
Description. Protoconch not known. Teleoconch loosely coiled with round aperture and apparently without keel. Shell sculpture of well defined, densely spaced granular spiral ribs crossed by densely spaced growth lines. Spiral ribs may become slightly coarser on abapical side of whorl.
Measurements. Largest specimen with aperture diameter of 11.3 mm.
Remarks. The taxon has a strong resemblance to the Maastrichtian L. libycus Quaas, 1902 from Egypt and the Late Maastrichtian L. pinguis Holzapfel and L. cochleiformis (Müller) from Holland as figured by Wenz (1939), but differs by its strongly and evenly beaded spiral ribs. It also resembles Laxispira monilifera Sohl, 1964b from the Late Cretaceous of Mississippi, but differs by a more evenly beaded spiral sculpture.
description: Published as part of Hansen, Thomas, 2019, Gastropods from the Cretaceous-Palaeogene boundary in Denmark, pp. 1-196 in Zootaxa 4654 (1) on pages 110-111, DOI: 10.11646/zootaxa.4654.1.1, http://zenodo.org/record/3365803
Additional file 1: of Altered social behavior and ultrasonic communication in the dystrophin-deficient mdx mouse model of Duchenne muscular dystrophy
Creators: name: RubĂŠn Miranda
name: Nagapin, Flora
name: Bozon, Bruno
name: Laroche, Serge
name: Aubin, Thierry
name: Vaillend, Cyrille
Publisher: name: Figshare
Year: 2015
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Supplementary method section. Semi-automatic classification of mouse USVs. (PDF 144 kb)
Thereitis Le Renard 1998
Creators: name: Hansen, Thomas
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Littorinimorpha
Cerithiopsidae
Thereitis

description: Genus Thereitis Le Renard, 1998
Type species. Seila (Notoseila?) angusta Tembrock, 1964 (type by original designation). Early Oligocene, Paris Basin in France.
description: Published as part of Hansen, Thomas, 2019, Gastropods from the Cretaceous-Palaeogene boundary in Denmark, pp. 1-196 in Zootaxa 4654 (1) on page 114, DOI: 10.11646/zootaxa.4654.1.1, http://zenodo.org/record/3365803
Unraveling the Lhasa-Qiangtang collision in western Tibet: Insights from geochronological and paleomagnetic analyses
Creators: name: Song, Peiping
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 370599
subject: Geology not elsewhere classified

description: We describe the new paleomagnetic and geochronological data from the Cretaceous volcanics from the western Qiangtang. These data can be used to reconstruct the paleogeography of the Lhasa-Qiangtang collision in western Tibet.
Supporting Information for a submitting manuscript
Creators: name: Song, Peiping
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 370599
subject: Geology not elsewhere classified

description: We describe the new paleomagnetic and geochronological data from the Cretaceous volcanics from the western Qiangtang. These data can be used to reconstruct the paleogeography of the Lhasa-Qiangtang collision in western Tibet.
Onset density and inhibitory effects on lexical access in speech production
Creators: name: Casiro, Jessica Ananda
Publisher: name: University of British Columbia
Year: 2009

description: Lexical access in speech production involves multiple processing stages, beginning with the mental generation of a target concept and ending with a speaker's articulation of the target word. The current study aimed to explore the influence of competition and inhibition on the process of lexical access. In particular, the position of phonological overlap between a target word (e.g., lip) and its neighbors (e.g., lid vs. sip) was investigated for its influence on picture naming. It was hypothesized that greater inhibitory effects and slower response times in participants' naming would be observed for target words that have a predominance of neighbors which are onset related compared to those which are rhyme related. In addition, it was predicted that there would be a strong relationship between performance on the naming task and several inhibition tasks due to the common role of inhibition across tasks. Twenty-five native English participants completed a picture naming task, two language based inhibition tasks, and two non-language inhibition tasks. Participants' response times were recorded for incongruent/dense and congruent/sparse trials, and mean difference scores were examined to determine the inhibition effect sizes. The results showed that response times for dense onset trials were significantly slower than sparse onset trials, thereby supporting the first hypothesis. Inter-task correlation results, however, did not provide support for the second hypothesis that inhibition capacity would be common to different tasks. Factors such as varying task characteristics, modality of stimulus presentation, length of testing session, task counterbalancing, perceived task difficulty, and allocation of cognitive effort are discussed as having contributed to the lack of significant correlations.
Additional file 3: of Distinct effects of ASD and ADHD symptoms on reward anticipation in participants with ADHD, their unaffected siblings and healthy controls: a cross-sectional study
Creators: name: Dongen, Eelco Van
name: Rhein, Daniel Von
name: OâDwyer, Laurence
name: Franke, Barbara
name: Hartman, Catharina
name: Heslenfeld, Dirk
name: Hoekstra, Pieter
name: Oosterlaan, Jaap
name: Rommelse, Nanda
name: Buitelaar, Jan
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Cell Biology
subject: Pharmacology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Algorithm for ADHD diagnosis in NeuroIMAGE. Describes the diagnostic algorithm for assessment of ADHD in NeuroIMAGE. (PDF 531 kb)
MOESM12 of Integrated omics approaches provide strategies for rapid erythromycin yield increase in Saccharopolyspora erythraea
Creators: name: Karničar, Katarina
name: Drobnak, Igor
name: Petek, Marko
name: Magdevska, Vasilka
name: Horvat, Jaka
name: Vidmar, Robert
name: Špela Baebler
name: Rotter, Ana
name: Jamnik, Polona
name: Štefan Fujs
name: Turk, Boris
name: Fonovič, Marko
name: Gruden, Kristina
name: Kosec, Gregor
name: Petković, Hrvoje
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Computational Biology

description: Additional file 12. Figures representing western blot analyses of constitutively over-expressed ilvB1 gene and mms operon (mmsOp).
Tales of the fey : the use of traditional Faerie folklore in contemporary young adult fantasy novels
Creators: name: Andersen, Caralyn
Publisher: name: University of British Columbia
Year: 2009

description: There are many examples of novel-length renditions of traditional fairy tales to be found in young adult fantasy literature. Although there is a significant amount of research on the evolution of the fairy tale into novel length narratives, there is little focused on the use of the folklore of Faerie in fantasy novels. This thesis examines the Faerie-related folkloric themes and motifs to be found in four examples of contemporary young adult fantasy novels: An Earthly Knight, Thomas the Rhymer, Tithe, and The Hunter's Moon. Each of these narratives is rich in Faerie folklore. The authors, Janet McNaughton, Ellen Kushner, Holly Black, and O.R. Melling, have gone beyond the pop-culture image of the fairy and explored the many aspects of Faerie to be found in folklore. In their unique ways, these authors each explore Faerie as a realm full of marvels and contradictions, while remaining true to the nature of Faerie found in folklore. This strong base in traditional sources strengthens and adds depth to these narratives.
Additional file 2: of Distinct effects of ASD and ADHD symptoms on reward anticipation in participants with ADHD, their unaffected siblings and healthy controls: a cross-sectional study
Creators: name: Dongen, Eelco Van
name: Rhein, Daniel Von
name: OâDwyer, Laurence
name: Franke, Barbara
name: Hartman, Catharina
name: Heslenfeld, Dirk
name: Hoekstra, Pieter
name: Oosterlaan, Jaap
name: Rommelse, Nanda
name: Buitelaar, Jan
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Demographics of participants excluded for motion or too few MID trials. Lists the demographics of participants excluded for motion or too few MID trials and compares these with those of included participants. (PDF 344 kb)
Additional file 3: of Altered social behavior and ultrasonic communication in the dystrophin-deficient mdx mouse model of Duchenne muscular dystrophy
Creators: name: RubĂŠn Miranda
name: Nagapin, Flora
name: Bozon, Bruno
name: Laroche, Serge
name: Aubin, Thierry
name: Vaillend, Cyrille
Publisher: name: Figshare
Year: 2015
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology

description: Supplementary result section. Correlation analyses. (PDF 37 kb)
Additional file 3: of Investigating the effects of copy number variants on reading and language performance
Creators: name: Gialluisi, Alessandro
name: Visconti, Alessia
name: Willcutt, Erik
name: Smith, Shelley
name: Pennington, Bruce
name: Falchi, Mario
name: DeFries, John
name: Olson, Richard
name: Francks, Clyde
name: Fisher, Simon
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy

description: Supplementary results. Detailed results of FamCNV and PLINK QFAM GWAS meta-analyses; details of associations in the CHRNA7 and ZNF737 regions; results of pathway-based analysis. (DOCX 89 kb)
Additional file 7: of Distinct effects of ASD and ADHD symptoms on reward anticipation in participants with ADHD, their unaffected siblings and healthy controls: a cross-sectional study
Creators: name: Dongen, Eelco Van
name: Rhein, Daniel Von
name: OâDwyer, Laurence
name: Franke, Barbara
name: Hartman, Catharina
name: Heslenfeld, Dirk
name: Hoekstra, Pieter
name: Oosterlaan, Jaap
name: Rommelse, Nanda
name: Buitelaar, Jan
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Neuroscience
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 60506 Virology
subject: FOS: Biological sciences

description: Plots of ASD and ADHD effects in the three experimental groups. Contains plots of the effects of ASD and ADHD on reward anticipation split across the three experimental groups. (PDF 317 kb)
Additional file 1: of Investigating the effects of copy number variants on reading and language performance
Creators: name: Gialluisi, Alessandro
name: Visconti, Alessia
name: Willcutt, Erik
name: Smith, Shelley
name: Pennington, Bruce
name: Falchi, Mario
name: DeFries, John
name: Olson, Richard
name: Francks, Clyde
name: Fisher, Simon
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Supplementary methods. Details on IBG discriminant score; pairwise phenotypic correlations of PC1, IQadjPC1, and IBGdiscr; principal component analysis of LRR intensity data from DNA array. (DOCX 50 kb)
Additional file 1: of Treatment intentions of general practitioners regarding hypertension in the oldest old: a vignette study
Creators: name: Mermans, Evelyn
name: Degryse, Jan
name: Vaes, Bert
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: 60506 Virology
subject: Computational Biology

description: Appendices. Appendix 1: Example of the case vignettes. Appendix 2: Questions asked in each case. Appendix 3: Sensitivity analysis. (DOCX 125Â kb)
Thereitis Le Renard 1998
Creators: name: Hansen, Thomas
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Littorinimorpha
Cerithiopsidae
Thereitis

description: Thereitis sp.
Fig. 28E
Material. Specimen MGUH 33209 is an external mould of the protoconch and first five teleoconch whorls.
Occurrence. Lithified top of the Maastrichtian Højerup Member of the Tor Formation at Rødvig, Stevns Klint.
Description. Protoconch 0.7 mm high and 0.4 mm wide, multispiral, high conical with 5 ½ convex whorls separated by fairly deep sutures. First three whorls strongly expanding, following whorls of nearly equal width. First whorl smooth, the following covered by two peripheral to abapical spiral threads and up to 30 opisthocyrt and opisthocline collabral threads.
Teleoconch very slender, nearly parallel-sided, narrower than protoconch; whorls weakly, but distinctly convex, their height corresponding to their width. Teleoconch sculpture dominated by three to five spiral ribs, the three central ones strongest. Weakly developed and slightly prosocline transverse ribs are present between spiral ribs, giving the whorls a slightly reticulate sculpture.
Measurements. Specimen MGUH 33209 is 2.3 mm high and 0.4 mm wide, consisting of 10 whorls.
Remarks. The taxon differs from Thereitis cretacea n. sp. described above by the extremely slender spire with its narrow, but clearly convex teleoconch whorls carrying up to five spiral ribs. With only one available specimen so far it is unclear whether these differences are all true diagnostic characters or if some may reflect abnormal interspecific variation.
description: Published as part of Hansen, Thomas, 2019, Gastropods from the Cretaceous-Palaeogene boundary in Denmark, pp. 1-196 in Zootaxa 4654 (1) on page 117, DOI: 10.11646/zootaxa.4654.1.1, http://zenodo.org/record/3365803
RISK FACTORS FOR SCHISTOSOMIASIS INCIDENCE IN COMMUNITIES IN LINDU SUB-DISTRICT, SIGI DISTRICT, CENTRAL SULAWESI PROVINCE, INDONESIA
Creators: name: Linda Imelda Samel
name: Andi Zulkifli
name: Ida Leida Maria
name: Hasnawati Amqam
name: Stang
Publisher: name: Zenodo
Year: 2024
Subjects: Case-Control Study, Risk factors, Schistosomiasis, Lindu Community.

description: Abstract

Schistosomiasis is a disease that has been experienced for generations by a community, and until now it is still a public health problem and local government. This is because behavioural factors and ways to control this tropical disease have not been considered. Objectives: This study aims to determine the risk factors for schistosomiasis in the community in Lindu sub-district. Methodology: The type of research used was analytical observational with case-control design. The population in this study were all people who did laboratory stool tests with positive and negative results in the Lindu Health Centre working area. The sample in this study was 110 (22 cases, 88 controls). Cases were patients who suffering from schistosomiasis with positive faecal results from 2020-2023. The controls were neighbours of patients who did not suffer from schistosomiasis. The case sampling technique was exhaustive sampling, while the control used simple random sampling method. Bivariate analysis using chi-square test and multivariate using logistic regression test. Results: The results showed that significant risk factors for schistosomiasis were the use of water sources (OR=7.809; 95%CI=1.979-31.158), use of personal protective equipment (OR=9.066; 95%CI=2.834-31.468), taking deworming drugs (OR=4.5; 95%CI=1.463-13.613), and use of latrines (OR=12.647; 95%CI=1.821-138.206). On multivariate analysis, the use of personal protective equipment resulted (OR=7.89, p=0.000, coefficients=2.06) and latrine use (OR=8.55 with p=0.028, coefficients=2.14) in a probability of 15.89%. Conclusions: Respondents who did not use personal protective equipment and did not use latrines had a 15.89 times risk of suffering from schistosomiasis disease.
Additional file 1: of The influence of a modified lipopolysaccharide O-antigen on the biosynthesis of xanthan in Xanthomonas campestris pv. campestris B100
Creators: name: Steffens, Tim
name: Frank-Jörg Vorhölter
name: Giampà, Marco
name: Hublik, Gerd
name: Pühler, Alfred
name: Niehaus, Karsten
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Developmental Biology
subject: Plant Biology

description: GC chromatograms of a rhamnose:xylose 1:1 (20 μg) standard, Xcc B100 wild type and OA mutant strains. Due to the standard peaks a response factor for rhamnose towards xylose could be calculated. B100 Wild type data were compared to the wxcB mutant H21012, wxcK mutant H28110 and wxcN mutant H20110 towards their rhamnose amounts, after hydrolysis and reduction of 500 μg LPS. Standard chromatogram is depicted as zoom to optimize the view. (PDF 1357 kb)
Vatopsis Grundel 1980
Creators: name: Hansen, Thomas
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Ptenoglossa
Newtoniellidae
Vatopsis

description: Genus Vatopsis Gründel, 1980
Type species. Cerithium bimoniliferum Sandberger, 1858 (type by original designation). Late Oligocene, Germany.
description: Published as part of Hansen, Thomas, 2019, Gastropods from the Cretaceous-Palaeogene boundary in Denmark, pp. 1-196 in Zootaxa 4654 (1) on page 122, DOI: 10.11646/zootaxa.4654.1.1, http://zenodo.org/record/3365803
Additional file 2: of Genes with high penetrance for syndromic and non-syndromic autism typically function within the nucleus and regulate gene expression
Creators: name: Casanova, Emily
name: Sharp, Julia
name: Hrishikesh Chakraborty
name: Sumi, Nahid
name: Casanova, Manuel
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 60506 Virology
subject: Computational Biology

description: References for Additional file 1. (DOCX 157Â kb)
Vatopsis heinbergi Hansen 2019, n. sp.
Creators: name: Hansen, Thomas
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Ptenoglossa
Newtoniellidae
Vatopsis
Vatopsis heinbergi

description: Vatopsis heinbergi n. sp.
Figs 28 T–V
Diagnosis. Fairly broad-spired with strongly flattened whorls; periphery located close to abapical suture; transition to base sharp. Protoconch with a single spiral thread.
Derivation of name. In honour of C. Heinberg, who found the holotype and has dedicated much of his scientific effort into the study of the fauna and environments at the Danish Cretaceous-Palaeogene boundary.
Type material. The holotype MGUH 33220 is a nearly complete external mould with protoconch. Paratypes MGUH 33221 and MGUH 33222 are from the Cerithium Limestone Member at Skeldervig, Stevns Klint.
Type stratum and type locality. The lower Danian Cerithium Limestone Member at Hulerne (The Caves) near Storedal at Stevns Klint.
Occurrence. The lower Danian Cerithium Limestone at Stevns Klint.
Description. Protoconch planktotrophic turriculate, 0.85 mm high and 0.5 mm wide, consisting of around 5 ½ moderately convex whorls. Embryonic whorl slightly inflated, smooth. Second whorl too worn for a clear view of any potential sculpture. Succeeding whorls carrying 13–14 slightly opisthocline and opisthocyrt collabral threads per half whorl. The collabral threads may just cross single spiral thread appearing at periphery near abapical suture on final two whorls.
Teleoconch with flattened whorls with sharp transition to flat base. Aperture only partly preserved, appearing to have a straight columella.
Teleoconch sculpture reticulate with around 16 opisthocline transverse ribs per whorl on first teleoconch whorl. Transverse ribs crossed by three or four spiral ribs, the strongest located on keel slightly above abapical suture and succeeded by weaker abapical rib. Connecting points marked by tubercles. Base with strong spiral rib close to abaxial margin; otherwise smooth.
Measurements. The holotype MGUH 33220 is 3.3 mm high and 1.2 mm wide, consisting of five teleoconch whorls in addition to protoconch.
Remarks. The taxon appears to resemble the Bohemian Cerithium ternatum Reuss, 1845, but differs at least by the better developed spiral and transverse ribs in contrast to the tubercle sculpture.
description: Published as part of Hansen, Thomas, 2019, Gastropods from the Cretaceous-Palaeogene boundary in Denmark, pp. 1-196 in Zootaxa 4654 (1) on page 122, DOI: 10.11646/zootaxa.4654.1.1, http://zenodo.org/record/3365803
MOESM1 of A metabolomics-based strategy for identification of gene targets for phenotype improvement and its application to 1-butanol tolerance in Saccharomyces cerevisiae
Creators: name: Teoh, Shao
name: Sastia Putri
name: Mukai, Yukio
name: Bamba, Takeshi
name: Fukusaki, Eiichiro
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics

description: Additional file 1: Supplemental tables.Â Full data for various tables and charts found in the text.
Adding climate costs to health economic evaluation: the CHEERS ClimatE checklist
Creators: name: Oldenburg, Jule
name: Lange, Oliver
name: Mattis Keil
name: Rogowski, Wolf
Publisher: name: OSF Registries
Year: 2023
Subjects: subject: Health Economics
subject: Environmental Public Health
subject: Public Health
subject: Medicine and Health Sciences
subject: Economics
subject: Social and Behavioral Sciences

description: Given the goal of decreasing carbon emissions in healthcare, decision-makers need to consider the external costs resulting from the climate impact (climate costs) of health technologies. In addition to standards of health economic evaluation (HEE), there are established standards for estimating climate footprints (CF), a measure for greenhouse gas emissions that can be valued with prices for climate damage. To use studies that incorporate CF in HEE for evidence-based decisions, reporting standards are needed to critically evaluate studies. We aim to extend the Consolidated Health Economic Evaluation Reporting Standards (CHEERS) with climate costs through a Delphi process, called CHEERS Climate Extension (CHEERS ClimatE).

For conducting CHEERS ClimatE, first, a preliminary steering group was formed, and a proposal of potentially relevant items was developed. Second, we will recruit experts in health economics and life cycle assessment and, third, conduct the Delphi process to validate and further develop the elements in CHEERS ClimatE. Fourth, the resulting checklist will be piloted based on relevant literature, and all items will be ratified by the steering group.