cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1: of Whole exome sequencing in three families segregating a pediatric case of sarcoidosis
Creators: name: Calender, Alain
name: Farnier, Pierre Rollat
name: Buisson, Adrien
name: Pinson, Stéphane
name: Abderrazzaq Bentaher
name: Lebecque, Serge
name: Corvol, Harriet
name: Taam, Rola Abou
name: Houdouin, Véronique
name: Bardel, Claire
name: Roy, Pascal
name: Devouassoux, Gilles
name: Cottin, Vincent
name: Seve, Pascal
name: Jean-François Bernaudin
name: Lim, Clarice
name: Weichhart, Thomas
name: Valeyre, Dominique
name: Pacheco, Yves
name: Clement, Annick
name: Nathan, Nadia
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 60506 Virology

description: Table S1. Recessive variants found in at least two affected children of different trios. Possibly pathogenic recessive variants (polymorphisms) found by whole-exome -sequencing in at least two affected children of the trios (T). Chr., chromosome; SNP, single nucleotide polymorphism; QUAL., a quality parameter measuring the probability p that the observation of the variant is due to chance (for ex: QUAL = n, p = 1/n). As detailed in the text, Alamut® Visual integrates missense variant pathogenicity prediction tools and in silico study of variants’ effect on RNA splicing, allowing the assessment of their potential impact on splice junctions and splicing regulatory sequences. Alamut® Visual helped us also to exclude well known mutations identified in recessive diseases for those genes which have been related to known genetic diseases (as shown in Table 3). (DOCX 23 kb)
Neuromorphic computing with multi-memristive synapses
Creators: name: Boybat, Irem
name: Gallo, Manuel Le
name: Nandakumar, S. R.
name: Moraitis, Timoleon
name: Parnell, Thomas
name: Tuma, Tomas
name: Rajendran, Bipin
name: Leblebici, Yusuf
name: Sebastian, Abu
name: Eleftheriou, Evangelos
Publisher: name: arXiv
Year: 2017
Subjects: subject: Emerging Technologies (cs.ET)
subject: FOS: Computer and information sciences

description: Neuromorphic computing has emerged as a promising avenue towards building the next generation of intelligent computing systems. It has been proposed that memristive devices, which exhibit history-dependent conductivity modulation, could efficiently represent the synaptic weights in artificial neural networks. However, precise modulation of the device conductance over a wide dynamic range, necessary to maintain high network accuracy, is proving to be challenging. To address this, we present a multi-memristive synaptic architecture with an efficient global counter-based arbitration scheme. We focus on phase change memory devices, develop a comprehensive model and demonstrate via simulations the effectiveness of the concept for both spiking and non-spiking neural networks. Moreover, we present experimental results involving over a million phase change memory devices for unsupervised learning of temporal correlations using a spiking neural network. The work presents a significant step towards the realization of large-scale and energy-efficient neuromorphic computing systems.
Speaker Identification in each of the Neutral and Shouted Talking Environments based on Gender-Dependent Approach Using SPHMMs
Creators: name: Shahin, Ismail
Publisher: name: arXiv
Year: 2017
Subjects: subject: Artificial Intelligence (cs.AI)
subject: Sound (cs.SD)
subject: FOS: Computer and information sciences

description: It is well known that speaker identification performs extremely well in the neutral talking environments; however, the identification performance is declined sharply in the shouted talking environments. This work aims at proposing, implementing and testing a new approach to enhance the declined performance in the shouted talking environments. The new proposed approach is based on gender-dependent speaker identification using Suprasegmental Hidden Markov Models (SPHMMs) as classifiers. This proposed approach has been tested on two different and separate speech databases: our collected database and the Speech Under Simulated and Actual Stress (SUSAS) database. The results of this work show that gender-dependent speaker identification based on SPHMMs outperforms gender-independent speaker identification based on the same models and gender-dependent speaker identification based on Hidden Markov Models (HMMs) by about 6% and 8%, respectively. The results obtained based on the proposed approach are close to those obtained in subjective evaluation by human judges.
Practical Attacks Against Graph-based Clustering
Creators: name: Chen, Yizheng
name: Nadji, Yacin
name: Kountouras, Athanasios
name: Monrose, Fabian
name: Perdisci, Roberto
name: Antonakakis, Manos
name: Vasiloglou, Nikolaos
Publisher: name: arXiv
Year: 2017
Subjects: subject: Cryptography and Security (cs.CR)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: Graph modeling allows numerous security problems to be tackled in a general way, however, little work has been done to understand their ability to withstand adversarial attacks. We design and evaluate two novel graph attacks against a state-of-the-art network-level, graph-based detection system. Our work highlights areas in adversarial machine learning that have not yet been addressed, specifically: graph-based clustering techniques, and a global feature space where realistic attackers without perfect knowledge must be accounted for (by the defenders) in order to be practical. Even though less informed attackers can evade graph clustering with low cost, we show that some practical defenses are possible.
description: ACM CCS 2017
Stability of trions in coupled quantum wells modelled by two-dimensional bilayers
Creators: name: Witham, O.
name: Hunt, R. J.
name: Drummond, N. D.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We report variational and diffusion quantum Monte Carlo calculations of the binding energies of indirect trions and biexcitons in ideal two-dimensional bilayer systems within the effective-mass approximation, and with a Coulomb $1/r$ interaction between charge carriers. The critical layer separation at which trions become unbound has been studied for various electron-hole mass ratios, and found to be over an order of magnitude larger than the critical layer separation for biexcitons.
MOESM6 of Reproducible proteomics sample preparation for single FFPE tissue slices using acid-labile surfactant and direct trypsinization
Creators: name: FĂśll, Melanie
name: Fahrner, Matthias
name: Oria, Victor
name: KĂźhs, Markus
name: Biniossek, Martin
name: Werner, Martin
name: Bronsert, Peter
name: Schilling, Oliver
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Molecular Biology
subject: Biotechnology
subject: Computational Biology

description: Additional file 6. Proteome overlaps and Pearson correlation coefficients between the differently stained tissues prepared with the DTR protocol. (A) Percent of shared proteins between all replicates. (B) Pearson correlation coefficients for the correlation of LFQ intensities between all replicates.
Bose-Einstein Condensates in Charged Black-Hole Spacetimes
Creators: name: Castellanos, Elías
name: Degollado, Juan Carlos
name: Lämmerzahl, Claus
name: Macías, Alfredo
name: Perlick, Volker
Publisher: name: arXiv
Year: 2017
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We analyze Bose-Einstein condensates on three types of spherically symmetric and static charged black-hole spacetimes: The Reissner-Nordström spacetime, Hoffmann's Born-Infeld black-hole spacetime, and the regular Ayón-Beato-García spacetime. The Bose-Einstein condensate is modeled in terms of a massive scalar field that satisfies a Klein-Gordon equation with a self-interaction term. The scalar field is assumed to be uncharged and not self-gravitating. If the mass parameter of the scalar field is chosen sufficiently small, there are quasi-bound states of the scalar field that may be interpreted as dark matter clouds. We estimate the size and the total energy of such clouds around charged supermassive black holes and we investigate if their observable features can be used for discriminating between the different types of charged black holes.
description: 19 pages, 8 figures
Comparing & Contrasting Negative, Positive & Republican Liberty
Creators: name: Mayinje, Qhayiya
Publisher: name: figshare
Year: 2022
Subjects: subject: 160609 Political Theory and Political Philosophy
subject: FOS: Political science
subject: 160699 Political Science not elsewhere classified

description: A political comparison on the differences and similarities between positive, negative and republican liberty.
Actomyosin regulation by Eph receptor signaling couples boundary cell formation to border sharpness.
Creators: name: Cayuso, Jordi
name: Qiling Xu
name: Addison, Megan
name: Wilkinson, David G
Publisher: name: The Francis Crick Institute
Year: 2020
Subjects: subject: Neurosciences
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Human Biology & Physiology
subject: Stem Cells
subject: Model organisms

description: The segregation of cells with distinct regional identity underlies formation of a sharp border, which in some tissues serves to organise a boundary signaling centre. It is unclear whether or how border sharpness is coordinated with induction of boundary-specific gene expression. We show that forward signaling of EphA4 is required for border sharpening and induction of boundary cells in the zebrafish hindbrain, which we find both require kinase-dependent signaling, with a lesser input of PDZ domain-dependent signaling. We find that boundary-specific gene expression is regulated by myosin II phosphorylation, which increases actomyosin contraction downstream of EphA4 signaling. Myosin phosphorylation leads to nuclear translocation of Taz, which together with Tead1a is required for boundary marker expression. Since actomyosin contraction maintains sharp borders, there is direct coupling of border sharpness to boundary cell induction that ensures correct organisation of signaling centres.
Additional file 1 of Pretreatment of cardiac progenitor cells with bradykinin attenuates H2O2-induced cell apoptosis and improves cardiac function in rats by regulating autophagy
Creators: name: Wu, Chan
name: Zhou, Xiao-Xia
name: Li, Jing-Zhou
name: Qiang, Hai-Feng
name: Wang, Yan
name: Li, Gang
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer

description: Additional file 1: Supplementary Figure 1. Characteristics of human cardiac c-Kit+ progenitor cells. (A). Representative flow cytometry image of the characteristics of the hCPCs with PE-conjunct CD8A, CD29, CD34, CD45, CD105, CD133, and CD117 antibodies. (B). Representative immunostaining image of hCPCs with an anti-CD117 antibody (marker of c-kit+ cells, red) and DAPI (blue) for nucleus staining. (C). Representative immunostaining image of multipotent-related protein SOX2 and Oct-3/4 of the isolated hCPCs with an anti-SOX2 (green) antibody, an anti-Oct-3/4 (red) antibody, and DAPI (blue) for nucleus staining.
MOESM5 of Reproducible proteomics sample preparation for single FFPE tissue slices using acid-labile surfactant and direct trypsinization
Creators: name: FĂśll, Melanie
name: Fahrner, Matthias
name: Oria, Victor
name: KĂźhs, Markus
name: Biniossek, Martin
name: Werner, Martin
name: Bronsert, Peter
name: Schilling, Oliver
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Cancer
subject: Computational Biology

description: Additional file 5. Distribution of LFQ intensities for the differently stained tissues processed with the DTR protocol. Distribution of log2 transformed LFQ intensities for all replicates stained with H&E (purple), hematoxylin (blue), hemalaun (pink) or unstained (white).
Anti-Old and Anti-Youth Attitudes Among Older Adults: Focusing on Middle-Aged and Old Age Identity
Creators: name: Shimizu, Yuho
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Life Sciences
subject: Arts and Humanities
subject: Social and Behavioral Sciences

description: There is a supplemental file of "Anti-Old and Anti-Youth Attitudes Among Older Adults: Focusing on Middle-Aged and Old Age Identity."
Lifting endo-$p$-permutation modules
Creators: name: Lassueur, Caroline
name: Thévenaz, Jacques
Publisher: name: arXiv
Year: 2017
Subjects: subject: Representation Theory (math.RT)
subject: FOS: Mathematics
subject: 20C20

description: We prove that all endo-$p$-permutation modules for a finite group are liftable from characteristic $p>0$ to characteristic $0$.
Elongation factor TFIIS prevents transcription stress and R-loop accumulation to maintain genome stability
Creators: name: Zatreanu, Diana
name: Han, Zhong
name: Mitter, Richard
name: Tumini, Emanuela
name: Williams, Hannah
name: Gregersen, Lea
name: A Barbara Dirac-Svejstrup
name: Roma, Stefania
name: Stewart, Aengus
name: Aguilera, Andres
name: Svejstrup, Jesper Q
Publisher: name: The Francis Crick Institute
Year: 2020
Subjects: Model organisms
Biochemistry & Proteomics
Tumour Biology
Gene Expression
Genetics & Genomics
Genome Integrity & Repair
Chemical Biology & High Throughput
Computational & Systems Biology

description: Although correlations between RNA polymerase II (RNAPII) transcription stress, R-loops, and genome instability have been established, the mechanisms underlying these connections remain poorly understood. Here, we used a mutant version of the transcription elongation factor TFIIS (TFIISmut), aiming to specifically induce increased levels of RNAPII pausing, arrest, and/or backtracking in human cells. Indeed, TFIISmut expression results in slower elongation rates, relative depletion of polymerases from the end of genes, and increased levels of stopped RNAPII; it affects mRNA splicing and termination as well. Remarkably, TFIISmut expression also dramatically increases R-loops, which may form at the anterior end of backtracked RNAPII and trigger genome instability, including DNA strand breaks. These results shed light on the relationship between transcription stress and R-loops and suggest that different classes of R-loops may exist, potentially with distinct consequences for genome stability.
On the Progenitor of the Type Ic Supernova 2012fh
Creators: name: Johnson, Samson A.
name: Kochanek, C. S.
name: Adams, S. M.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Little is observationally known about the progenitors of Type Ibc supernovae (SNe) or the typical activity of SNe progenitors in their final years. Here, we analyze deep Large Binocular Telescope imaging data spanning the 4 years before and after the Type Ic SN 2012fh using difference imaging. We place 1$σ$ upper limits on the detection of the progenitor star at $M_R>-4.0$, $M_V>-3.8$, $M_B>-3.1$, and $M_U>-3.8$ mag. These limits are the tightest placed on a Type Ic SNe and they largely rule out single star evolutionary models in favor of a binary channel as the origin of this SN. We also constrain the activity of the progenitor to be small on an absolute scale, with the RMS $UBVR$ optical variability $<2500L_\odot$ and long-term dimming or brightening trends $<1000L_\odot/\text{year}$ in all four bands.
description: 5 pages, 5 figures, 2 tables. Accepted by MNRAS, https://doi.org/10.1093/mnras/stx2170
Euler systems with local conditions
Creators: name: Loeffler, David
name: Zerbes, Sarah Livia
Publisher: name: arXiv
Year: 2017
Subjects: subject: Number Theory (math.NT)
subject: FOS: Mathematics
subject: 11R23, 11F80

description: Euler systems are certain compatible families of cohomology classes, which play a key role in studying the arithmetic of Galois representations. We briefly survey the known Euler systems, and recall a standard conjecture of Perrin-Riou predicting what kind of Euler system one should expect for a general Galois representation. Surprisingly, several recent constructions of Euler systems do not seem to fit the predictions of this conjecture, and we formulate a more general conjecture which explains these extra objects. The novel aspect of our conjecture is that it predicts that there should often be Euler systems of several different ranks associated to a given Galois representation, and we describe how we expect these objects to be related.
description: Expository article, 13 pages. To appear in proceedings of the Iwasawa 2017 conference
Retroviral integration into nucleosomes through DNA looping and sliding along the histone octamer.
Creators: name: Wilson, Marcus D
name: Renault, Ludovic
name: Maskell, Daniel P
name: Ghoneim, Mohamed
name: Pye, Valerie E
name: Nans, Andrea
name: Rueda, David S
name: Cherepanov, Peter
name: Costa, Alessandro
Publisher: name: The Francis Crick Institute
Year: 2020
Subjects: Biochemistry & Proteomics
Imaging
Genome Integrity & Repair
Structural Biology & Biophysics
Cell Cycle & Chromosomes
Chemical Biology & High Throughput

description: Retroviral integrase can efficiently utilise nucleosomes for insertion of the reverse-transcribed viral DNA. In face of the structural constraints imposed by the nucleosomal structure, integrase gains access to the scissile phosphodiester bonds by lifting DNA off the histone octamer at the site of integration. To clarify the mechanism of DNA looping by integrase, we determined a 3.9 Å resolution structure of the prototype foamy virus intasome engaged with a nucleosome core particle. The structural data along with complementary single-molecule Förster resonance energy transfer measurements reveal twisting and sliding of the nucleosomal DNA arm proximal to the integration site. Sliding the nucleosomal DNA by approximately two base pairs along the histone octamer accommodates the necessary DNA lifting from the histone H2A-H2B subunits to allow engagement with the intasome. Thus, retroviral integration into nucleosomes involves the looping-and-sliding mechanism for nucleosomal DNA repositioning, bearing unexpected similarities to chromatin remodelers.
Additional file 2: of A sophisticated, differentiated Golgi in the ancestor of eukaryotes
Creators: name: Lael Barlow
name: Nývltová, Eva
name: Aguilar, Maria
name: Tachezy, Jan
name: Dacks, Joel
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Figure S1. Dot plot of all potential Golgi stacking proteins examined. Taxa with unstacked Golgi are indicated by red text. Blue dots indicate identification of at least one orthologue. Light blue dots indicate the presence of an unresolved protein containing a GRIP-domain but which upon inspection of the alignment does not appear to be a confirmed orthologue of this protein. These proteins were therefore not taken into account when estimating the appearance point of a component. However, since all deductions made represent an estimate of “at least as early as time point X”, our deductions still stand, but origins of proteins could be slightly earlier than stated, should these candidates be real positive hits. Regardless, their presence does not affect the overall conclusions regarding pan-eukaryotic mechanisms of Golgi-stacking, since none of these cases involve ancient candidate stacking genes. For the GRIP-containing protein search results, positive hits in metazoans are also identified in searches specifically for the human GRIP domain-containing proteins GCC185, GCC88, golgin-245, or golgin-97. However, “GRIP-containing” includes animal-specific GRIP golgins (GCC88, GCC185, golgin-245, and golgin-97), as well as non-animal sequences with GRIP domains. Grey dots indicate identification of a potential GRIP domain-containing sequence not retrieved as positive hits in the previous searches, but matching the HMM with a bit score of at least 25. The striped dot (P. pastoris Sec16) indicates identification of Sec16 in nucleotide sequence scaffolds, but not predicted protein sequences (see Methods). Homology search results supporting the orthology assignments are shown in Additional file 6: Table S3. The phylogenetic tree on the left is based on established topologies for the taxa shown [75, 101]. (PDF 937 kb)
ПСИХОЛОГИЧЕСКИЕ ОСНОВЫ И НАУЧНО-ТЕОРЕТИЧЕСКИЕ ПРИНЦИПЫ ФОРМИРОВАНИЯ ЯЗЫКОВЫХ УСТАНОВОК СТУДЕНТОВ ВЫСШЕГО УЧЕБНОГО ЗАВЕДЕНИЯ.
Creators: name: Джалилова, Зарнигор
name: Эргашева, Шахноза
Publisher: name: Zenodo
Year: 2024

description: данная статья рассматривает психологические основы и научно-теоретические принципы, лежащие в основе формирования языковых установок у студентов высших учебных заведений. Авторы анализируют влияние психологических факторов на процесс приобретения иностранных языков студентами, освещают ключевые концепции и теории, помогающие понять механизмы формирования языковых навыков. Также обсуждаются методики и стратегии, основанные на психологических принципах, которые могут быть эффективно использованы в образовательном процессе для содействия успешному освоению языковых навыков студентами.
New Lower Bounds on the Generalized Hamming Weights of AG Codes
Creators: name: Bras-Amorós, Maria
name: Lee, Kwankyu
name: Vico-Oton, Albert
Publisher: name: arXiv
Year: 2017
Subjects: subject: Information Theory (cs.IT)
subject: FOS: Computer and information sciences

description: A sharp upper bound for the maximum integer not belonging to an ideal of a numerical semigroup is given and the ideals attaining this bound are characterized. Then the result is used, through the so-called Feng-Rao numbers, to bound the generalized Hamming weights of algebraic-geometry codes. This is further developed for Hermitian codes and the codes on one of the Garcia-Stichtenoth towers, as well as for some more general families.
Universal Spin Dynamics in Quantum Wires
Creators: name: Fajardo, E. A.
name: Zülicke, U.
name: Winkler, R.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We discuss the universal spin dynamics in quasi one-dimensional systems including the real spin in narrow-gap semiconductors like InAs and InSb, the valley pseudospin in staggered single-layer graphene, and the combination of real spin and valley pseudospin characterizing single-layer transition metal dichalcogenides (TMDCs) such as MoS$_2$, WS$_2$, MoSe$_2$, and WSe$_2$. All these systems can be described by the same Dirac-like Hamiltonian. Spin-dependent observable effects in one of these systems thus have counterparts in each of the other systems. Effects discussed in more detail include equilibrium spin currents, current-induced spin polarization (Edelstein effect), and spin currents generated via adiabatic spin pumping. Our work also suggests that a long-debated spin-dependent correction to the position operator in single-band models should be absent.
description: 8 pages, 4 figures, published version
FRANSUZ TILIDA "AYOL" KONSEPTINING LISONIY BELGILARI
Creators: name: Adambayeva, Shahnoza
Publisher: name: Zenodo
Year: 2024

description: Mazkur maqola fransuz tilida “ayol” konseptini oiladagi rolini ifodalovchi leksik birliklarni ma’nosini kengroq yoritishga bag’ishlanadi. “Ayol” konseptining  fransuz madaniy va ijtimoiy hayotidagi o’rni, mavqei hamda uning o’ziga xos xarakteristikasini ochib berishlishi ko’zda tutilgan bo’lib, unda “ayol” konseptini ifodalovchi aforizm va maqollar tahlil etiladi.
Supplementary materials for "Protecting researchers, protecting bats"
Creators: name: Researcher, Bat
Publisher: name: figshare
Year: 2025
Subjects: classificationCode: 410401
subject: Conservation and biodiversity
classificationCode: 460105
subject: Applications in social sciences and education

description: Files included are:The anonymised dataset from the qualitative questionnaire, with frequency distributions of responses to each question. There is are instructional worksheets with more details.An Excel file that serves as a key to understand the quantitative survey.A csv file with the anonymised data from the quantitative survey, which were analysed in R.The R script used to clean the data.The R script used to analyse the data.
Additional file 1: of Spatial variation in the use of reproductive health services over time: a decomposition analysis
Creators: name: Abekah-Nkrumah, Gordon
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy

description: Table S1. Determinants of 4+ Antenatal Visits in Ghana â Log Odds with Confidence Intervals. Contains regression estimates of the determinants of 4+ antenatal visits in Ghana, with the coefficients expressed in log odds and also showing the confidence intervals. Table S2. Determinants Use of Skilled Birth Attendants in Ghana â Log Odds with Confidence Intervals. Contains regression estimates of use of skilled birth attendants in Ghana, with the coefficients expressed in log odds and also showing the confidence intervals. (DOCX 38 kb)
Coincidence velocity map imaging using Tpx3Cam, a time stamping optical camera with 1.5 ns timing resolution
Creators: name: Zhao, Arthur
name: van Beuzekom, Martin
name: Bouwens, Bram
name: Byelov, Dmitry
name: Chakaberia, Irakli
name: Cheng, Chuan
name: Maddox, Erik
name: Nomerotski, Andrei
name: Svihra, Peter
name: Visser, Jan
name: Vrba, Vaclav
name: Weinacht, Thomas
Publisher: name: arXiv
Year: 2017
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: We demonstrate a coincidence velocity map imaging apparatus equipped with a novel time stamping fast optical camera, Tpx3Cam, whose high sensitivity and ns timing resolution allow for simultaneous position and time-of-flight detection. This single detector design is simple, flexible and capable of highly differential measurements. We show detailed characterization of the camera and its application in strong field ionization experiments.
description: 18 pages, 12 figures
Bordered Floer homology and incompressible surfaces
Creators: name: Alishahi, Akram
name: Lipshitz, Robert
Publisher: name: arXiv
Year: 2017
Subjects: subject: Geometric Topology (math.GT)
subject: FOS: Mathematics

description: We show that bordered Heegaard Floer homology detects incompressible surfaces and bordered-sutured Floer homology detects partly boundary parallel tangles and bridges, in natural ways. For example, there is a bimodule Lambda so that the tensor product of CFD(Y) and Lambda is Hom-orthogonal to CFD(Y) if and only if the boundary of Y admits an essential compressing disk. In the process, we sharpen a nonvanishing result of Ni's. We also extend Lipshitz-Ozsváth-Thurston's "factoring" algorithm for computing HF-hat to compute bordered-sutured Floer homology, to make both results on detecting incompressibility practical. In particular, this makes Zarev's tangle invariant manifestly combinatorial.
description: 34 pages, 11 figures. V2: now also detects bridge tangles
MOESM4 of Reproducible proteomics sample preparation for single FFPE tissue slices using acid-labile surfactant and direct trypsinization
Creators: name: FĂśll, Melanie
name: Fahrner, Matthias
name: Oria, Victor
name: KĂźhs, Markus
name: Biniossek, Martin
name: Werner, Martin
name: Bronsert, Peter
name: Schilling, Oliver
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Computational Biology

description: Additional file 4. Proteome overlaps and Pearson correlation coefficients between all DTR and FASP replicates. (A) Percent of shared proteins between all replicates. (B) Pearson correlation coefficients of LFQ intensities between all replicates.
Hydrodynamic limit for a disordered harmonic chain
Creators: name: Bernardin, Cédric
name: Huveneers, François
name: Olla, Stefano
Publisher: name: arXiv
Year: 2017
Subjects: subject: Probability (math.PR)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Mathematical Physics (math-ph)
subject: FOS: Mathematics
subject: FOS: Physical sciences

description: We consider a one-dimensional unpinned chain of harmonic oscillators with random masses. We prove that after hyperbolic scaling of space and time the distributions of the elongation, momentum and energy converge to the solution of the Euler equations. Anderson localization decouples the mechanical modes from the thermal modes, allowing the closure of the energy conservation equation even out of thermal equilibrium. This example shows that the derivation of Euler equations rests primarily on scales separation and not on ergodicity. Furthermore, it follows from our proof that the temperature profile does not evolve in any space-time scale.
description: 20 pages
Additional file 1: of A sophisticated, differentiated Golgi in the ancestor of eukaryotes
Creators: name: Lael Barlow
name: NĂ˝VltovĂĄ, Eva
name: Aguilar, Maria
name: Tachezy, Jan
name: Dacks, Joel
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Table S1. Human Golgi proteins examined, as well as their gene names, accession numbers, description of phenotype, and citations. (DOCX 147 kb)
Modernity at the Centre of Chinese & Russian Revolution: A Political Discussion
Creators: name: Mayinje, Qhayiya
Publisher: name: figshare
Year: 2022
Subjects: subject: 160206 Private Policing and Security Services
subject: FOS: Law
subject: 160609 Political Theory and Political Philosophy
subject: FOS: Political science
subject: 160699 Political Science not elsewhere classified
subject: 160603 Comparative Government and Politics
subject: 160606 Government and Politics of Asia and the Pacific

description: A critical discussion on the existence and presence of modernity within both the chinese and russian revolution.
Block-Simultaneous Direction Method of Multipliers: A proximal primal-dual splitting algorithm for nonconvex problems with multiple constraints
Creators: name: Moolekamp, Fred
name: Melchior, Peter
Publisher: name: arXiv
Year: 2017
Subjects: subject: Optimization and Control (math.OC)
subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Machine Learning (cs.LG)
subject: FOS: Mathematics
subject: FOS: Computer and information sciences

description: We introduce a generalization of the linearized Alternating Direction Method of Multipliers to optimize a real-valued function $f$ of multiple arguments with potentially multiple constraints $g_\circ$ on each of them. The function $f$ may be nonconvex as long as it is convex in every argument, while the constraints $g_\circ$ need to be convex but not smooth. If $f$ is smooth, the proposed Block-Simultaneous Direction Method of Multipliers (bSDMM) can be interpreted as a proximal analog to inexact coordinate descent methods under constraints. Unlike alternative approaches for joint solvers of multiple-constraint problems, we do not require linear operators $L$ of a constraint function $g(L\ \cdot)$ to be invertible or linked between each other. bSDMM is well-suited for a range of optimization problems, in particular for data analysis, where $f$ is the likelihood function of a model and $L$ could be a transformation matrix describing e.g. finite differences or basis transforms. We apply bSDMM to the Non-negative Matrix Factorization task of a hyperspectral unmixing problem and demonstrate convergence and effectiveness of multiple constraints on both matrix factors. The algorithms are implemented in python and released as an open-source package.
description: 13 pages, 4 figures
Supplemental Figures S1-S5 from Genetically identical mice express alternative reproductive tactics depending on social conditions in the field
Creators: name: Zipple, Matthew N.
name: Vogt, Caleb C.
name: Sheehan, Michael J
Publisher: name: The Royal Society
Year: 2024
Subjects: classificationCode: 310399
subject: Ecology not elsewhere classified
classificationCode: 310901
subject: Animal behaviour

description: In many species, establishing and maintaining a territory is critical to survival and reproduction, and an animal's ability to do so is strongly influenced by the presence and density of competitors. Here we manipulate social conditions to study the alternative reproductive tactics displayed by genetically identical, age-matched laboratory mice competing for territories under ecologically realistic social environmental conditions. We introduced adult males and females of the laboratory mouse strain (C57BL/6J) into a large, outdoor field enclosure containing defendable resource zones under one of two social conditions. We first created a low-density social environment, such that the number of available territories exceeded the number of males. After males established stable territories, we introduced a pulse of intruder males and observed the resulting defensive and invasive tactics employed. In response to this change in social environment, males with large territories invested more in patrolling but were less effective at excluding intruder males as compared to males with small territories. Intruding males failed to establish territories and displayed an alternative tactic featuring greater exploration as compared to genetically identical territorial males. Alternative tactics did not lead to equal reproductive success—males that acquired territories experienced greater survival and had greater access to females.
A Survey of Security Assessment Ontologies
Creators: name: Rosa, Ferrucio de Franco
name: Jino, Mario
Publisher: name: arXiv
Year: 2017
Subjects: subject: Software Engineering (cs.SE)
subject: FOS: Computer and information sciences

description: A literature survey on ontologies concerning the Security Assessment domain has been carried out to uncover initiatives that aim at formalizing concepts from the Security Assessment field of research. A preliminary analysis and a discussion on the selected works are presented. Our main contribution is an updated literature review, describing key characteristics, results, research issues, and application domains of the papers. We have also detected gaps in the Security Assessment literature that could be the subject of further studies in the field. This work is meant to be useful for security researchers who wish to adopt a formal approach in their methods.
Accountability Scale Development
Creators: name: Witvliet, Charlotte
name: Jang, Sung Joon
name: Johnson, Byron
name: Evans, C.
name: Peteet, John
name: Torrance, Andrew
name: Roberts, Robert
name: Leman, Joseph
name: Berry, Jack
name: Hayden, Ashley
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Philosophy
subject: FOS: Philosophy, ethics and religion
subject: Psychiatry and Psychology
subject: Religion
subject: Medicine and Health Sciences
subject: Arts and Humanities
subject: Criminology
subject: FOS: Law
subject: Social and Behavioral Sciences
subject: Psychology
subject: FOS: Psychology
subject: Sociology
subject: FOS: Sociology

description: This registration includes materials, deidentified data files, and outputs for the 11-item human accountability scale. It corresponds to the Preregistration of "Human and Transcendent Accountability Scale Development" https://doi.org/10.17605/OSF.IO/J2DES
title: NALBB: Enquête dialectologique à Plougonvelin (2)
Creators: name: Le Dû, Jean
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2011
Subjects: subject: Breton
subject: bre

description: Cet enregistrement provient des enquêtes dialectologiques en vue de constituer le Nouvel Atlas Linguistique de la Basse-Bretagne dirigé par M. Jean Le Dû.
description: Mme Jeanne Mingant née en 1893, femme de ménage
description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
MOESM3 of Reproducible proteomics sample preparation for single FFPE tissue slices using acid-labile surfactant and direct trypsinization
Creators: name: Föll, Melanie
name: Fahrner, Matthias
name: Oria, Victor
name: Kühs, Markus
name: Biniossek, Martin
name: Werner, Martin
name: Bronsert, Peter
name: Schilling, Oliver
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Inorganic Chemistry
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 3. Distribution of LFQ intensities for the DTR and FASP protocols. Log2 transformed LFQ intensity distribution depicted for all replicates with DTR in black, FASP 10 k in dark grey and FASP 30 k in light grey.
What-and-Where to Match: Deep Spatially Multiplicative Integration Networks for Person Re-identification
Creators: name: Wu, Lin
name: Wang, Yang
name: Li, Xue
name: Gao, Junbin
Publisher: name: arXiv
Year: 2017
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: Matching pedestrians across disjoint camera views, known as person re-identification (re-id), is a challenging problem that is of importance to visual recognition and surveillance. Most existing methods exploit local regions within spatial manipulation to perform matching in local correspondence. However, they essentially extract \emph{fixed} representations from pre-divided regions for each image and perform matching based on the extracted representation subsequently. For models in this pipeline, local finer patterns that are crucial to distinguish positive pairs from negative ones cannot be captured, and thus making them underperformed. In this paper, we propose a novel deep multiplicative integration gating function, which answers the question of \emph{what-and-where to match} for effective person re-id. To address \emph{what} to match, our deep network emphasizes common local patterns by learning joint representations in a multiplicative way. The network comprises two Convolutional Neural Networks (CNNs) to extract convolutional activations, and generates relevant descriptors for pedestrian matching. This thus, leads to flexible representations for pair-wise images. To address \emph{where} to match, we combat the spatial misalignment by performing spatially recurrent pooling via a four-directional recurrent neural network to impose spatial dependency over all positions with respect to the entire image. The proposed network is designed to be end-to-end trainable to characterize local pairwise feature interactions in a spatially aligned manner. To demonstrate the superiority of our method, extensive experiments are conducted over three benchmark data sets: VIPeR, CUHK03 and Market-1501.
description: Published at Pattern Recognition, Elsevier
title: NALBB: Enquête dialectologique à Bourg-Blanc (1)
Creators: name: Le Dû, Jean
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2011
Subjects: subject: Breton
subject: bre

description: Cet enregistrement provient des enquêtes dialectologiques en vue de constituer le Nouvel Atlas Linguistique de la Basse-Bretagne dirigé par M. Jean Le Dû.
description: F.M. née en 1900, couturère
description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
title: Accelerating the preclinical development of effective vaccines for protection against Mycobacterium tuberculosis
Creators: name: Painter, HE
Publisher: name: London School of Hygiene & Tropical Medicine
Year: 2021

description: The Bacille Calmette–Guerin (BCG) vaccine offers partial protection against tuberculosis (TB). Vaccines able to sufficiently contribute to global TB control are required urgently. The mouse model is an important tool for preclinical evaluation of TB vaccines, however protection in this model is not always predictive of efficacy in humans. TB is caused by various members of the Mycobacterium tuberculosis (MTB) complex. Differences in the host response to infection are known; however, incorporation of this diversity into in vivo studies is not viable due to the large number of animals required. Currently, vaccines are commonly evaluated against laboratory strains. The evidence of protection gained from these studies is likely to be incomplete. The ex vivo mycobacterial growth inhibition assay (MGIA) represents an alternative viable tool to perform head-tohead screening of vaccine-induced immunity. A murine splenocyte MGIA has been established. This thesis demonstrates the adaptation of the murine MGIA for use with lung cells, as a potential readout of lung immunity. Further, the MGIA was used to determine vaccine-induced growth inhibition against multiple MTB clinical isolates. Comparison of the MGIA and in vivo infection was performed for the first time using clinical isolates. Observations indicate that the MGIA may represent a tool to evaluate vaccines against the most prevalent MTB lineages. Further optimisation for other lineages is required. Evaluation of the biological processes underlying growth inhibition was performed by RNA-seq. Vaccine- and lineage-specific gene perturbations were identified. Comparison of correlates of growth inhibition in the MGIA and protection in an in vivo dataset revealed that the lung MGIA recapitulates several elements of in vivo transcriptional perturbation observed following infection. Collectively, these observations demonstrate that the MGIA warrants further development as a simplified model of ex vivo immunity to infection able to expediate and diversify preclinical TB vaccine testing.
title: NALBB: Enquête dialectologique à Bourg-Blanc (2)
Creators: name: Le Dû, Jean
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2011
Subjects: subject: Breton
subject: bre

description: Cet enregistrement provient des enquêtes dialectologiques en vue de constituer le Nouvel Atlas Linguistique de la Basse-Bretagne dirigé par M. Jean Le Dû.
description: F.M. née en 1900, couturère
description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
Nonlinear anisotropy growth in Bianchi-I spacetime in metric $f(R)$ cosmology
Creators: name: Bhattacharya, Kaushik
name: Chakraborty, Saikat
Publisher: name: arXiv
Year: 2017
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The present work is related to anisotropic cosmological evolution in metric $f(R)$ theory of gravity. The initial part of the paper develops the general cosmological dynamics of homogeneous anisotropic Bianchi-I spacetime in $f(R)$ cosmology. The anisotropic spacetime is pervaded by a barotropic fluid which has isotropic pressure. The paper predicts nonlinear growth of anisotropy in such spacetimes. In the later part of the paper we display the predictive power of the nonlinear differential equation responsible for the cosmological anisotropy growth in various relevant cases. We present the exact solutions of anisotropy growth in Starobinsky inflation driven by quadratic gravity and exponential gravity theory. Semi-analytical results are presented for the contraction phase in quadratic gravity bounce. The various examples of anisotropy growth in Bianchi-I model universe shows the complex nature of the problem at hand.
description: The article is made a bit shorter. Contains 24 pages and 5 figures. To be published in PRD
Supplementary Material from Cretaceous winged stick insects clarify the early evolution of Phasmatodea
Creators: name: Yang, Hongru
name: Yin, Xiangchu
name: Lin, Xiaodan
name: Wang, Chen
name: Shih, Chungkun
name: Zhang, Weiwei
name: Ren, Dong
name: Gao, Taiping
Publisher: name: The Royal Society
Year: 2019

description: Wingless and shorter winged stick insects are very common today, but most known extinct stick insects had fully developed wings, leading to contentious affinities among the extinct winged and extant groups. We report herein three male winged stick insects, assigned to Pterophasmatidae fam. nov., from mid-Cretaceous Myanmar (Burmese) amber. Pterophasmatidae fam. nov. are regarded as transitional taxa from extinct winged to modern wingless and shorter winged stick insects based on their similar tegmina venation with extinct Susumanioidea and some body features same as extant Phasmatodea. However, their symmetric phallic organs comprising two consistent phallomeres are different from those of all living groups. Phylogenetic analyses suggest that the extinct winged taxa, including the new family, are the stem groups of modern stick and leaf insects, and all of them constitute the clade of Phasmatodea. New findings indicate winged and wingless stick insects' morphologies diversified significantly during or before mid-Cretaceous.