cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Increase in transmitted resistance to non-nucleoside reverse transcriptase inhibitors among newly diagnosed HIV-1 infections in Europe
Creators: name: Frentz, Dineke
name: Vijver, David A. M. C. Van De
name: Abecasis, Ana B.
name: Albert, Jan
name: Hamouda, Osamah
name: Jørgensen, Louise B.
name: Kücherer, Claudia
name: Struck, Daniel
name: Schmit, Jean-Claude
name: Vercauteren, Jurgen
name: Åsjö, Birgitta
name: Balotta, Claudia
name: Beshkov, Danail
name: Camacho, Ricardo J.
name: Clotet, Bonaventura
name: Coughlan, Suzie
name: Griskevicius, Algirdas
name: Grossman, Zehava
name: Horban, Andrzej
name: Kolupajeva, Tatjana
name: Korn, Klaus
name: Kostrikis, Leondios G.
name: Liitsola, Kirsi
name: Linka, Marek
name: Nielsen, Claus
Publisher: name: Robert Koch-Institut, Infektionsepidemiologie
Year: 2014
Subjects: subject: Europe
subject: Transmission
subject: HIV-1
subject: Resistance
subject: 610 Medizin

description: Background: One out of ten newly diagnosed patients in Europe was infected with a virus carrying a drug resistant mutation. We analysed the patterns over time for transmitted drug resistance mutations (TDRM) using data from the European Spread program. Methods: Clinical, epidemiological and virological data from 4317 patients newly diagnosed with HIV-1 infection between 2002 and 2007 were analysed. Patients were enrolled using a pre-defined sampling strategy. Results: The overall prevalence of TDRM in this period was 8.9% (95% CI: 8.1-9.8). Interestingly, significant changes over time in TDRM caused by the different drug classes were found. Whereas nucleoside resistance mutations remained constant at 5%, a significant decline in protease inhibitors resistance mutations was observed, from 3.9% in 2002 to 1.6% in 2007 (p = 0.001). In contrast, resistance to non-nucleoside reverse transcriptase inhibitors (NNRTIs) doubled from 2.0% in 2002 to 4.1% in 2007 (p = 0.004) with 58% of viral strains carrying a K103N mutation. Phylogenetic analysis showed that these temporal changes could not be explained by large clusters of TDRM. Conclusion: During the years 2002 to 2007 transmitted resistance to NNRTI has doubled to 4% in Europe. The frequent use of NNRTI in first-line regimens and the clinical impact of NNRTI mutations warrants continued monitoring.
Additional file 1 of Assessing the sustainability of two independent voucher-based family planning programs in Pakistan: a 24-months post-intervention evaluation
Creators: name: Azmat, Syed Khurram
name: Ali, Moazzam
name: Rahman, Md. Mizanur
Publisher: name: figshare
Year: 2024
Subjects: Biological Sciences not elsewhere classified
Science Policy

description: Additional file 1: Supplementary Table 1. Clients’ perception regarding quality of FP services at post-endline according to type of service provider at MSS and GSM voucher programmes.
Phase transitions and thermodynamic cycles in the broken PT-regime
Creators: name: Fring, Andreas
name: Reboiro, Marta
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Physics (quant-ph)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: We propose a new type of quantum thermodynamic cycle whose efficiency is greater than the one of the classical Carnot cycle for the same conditions for a system when viewed as homogeneous. In our model this type of cycle only exists in the low temperature regime in the spontaneously broken parity-time-reversal (PT) symmetry regime of a non-Hermitian quantum theory and does not manifest in the PT-symmetric regime. We discuss this effect for an ensemble based on a model of a single boson coupled in a non-Hermitian way to a bath of different types of bosons with and without a time-dependent boundary. The cycle can not be set up when considering our system as heterogeneous, i.e. undergoing a first order phase transition. Within that interpretation we find that the entropy is vanishing throughout the spontaneously broken PT-regime.
description: 15 pages, 5 figures
$X(3960)$, $X_0(4140)$, and other compact $cs\bar{c}\bar{s}$ states
Creators: name: Li, Shi-Yuan
name: Liu, Yan-Rui
name: Man, Zi-Long
name: Si, Zong-Guo
name: Wu, Jing
Publisher: name: arXiv
Year: 2023
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: High Energy Physics - Lattice (hep-lat)
subject: Nuclear Experiment (nucl-ex)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We study the spectrum and rearrangement decays of S-wave $cs\bar{c}\bar{s}$ tetraquark states in a simplified quark model. The masses and widths are estimated by assuming that the $X(4140)$ is the lower $1^{++}$ $cs\bar{c}\bar{s}$ tetraquark. Comparing our results with experimental measurements, we find that the recently observed $X(3960)$ by LHCb can be assigned as the lowest $0^{++}$ $cs\bar{c}\bar{s}$ tetraquark state and the $X_0(4140)$ could be the second lowest $0^{++}$ $cs\bar{c}\bar{s}$ tetraquark. Predictions of ratios between partial widths for the involved tetraquarks are given. We call for searches for more $cs\bar{c}\bar{s}$ tetraquarks with $J^{PC}=1^{+-}$, $0^{++}$, and $2^{++}$.
description: 1 figure
Additional file 1 of Diversity of Culicoides in the middle belt of Ghana with Implications on the transmission of Mansonella perstans; a molecular approach
Creators: name: Debrah, Linda Batsa
name: Arthur, Joseph F.
name: Yeboah, Augustine
name: Owusu, Dorcas O.
name: Adankwah, Ernest
name: Acheampong, Isaac
name: Minadzi, Difery
name: Lamptey, Millicent
name: Opoku, Vera Serwaa
name: Aniagyei, Wilfred
name: Vivekanandan, Monika M.
name: Abass, Mohammed K.
name: Gawusu, Amidu
name: Wanji, Samuel
name: Debrah, Alexander Y.
name: Jacobsen, Marc
name: Phillips, Richard O.
Publisher: name: figshare
Year: 2024
Subjects: subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified

description: Additional file 1: Table S1. Specific sequences of Mansonella perstans primer set. FIP (forward inner primer), BIP (backward inner primer), F3 (forward outer primer), B3 (backward outer primer), LF (forward loop), LB (backward loop), µM (micromole), H2O (water).
Additional file 2 of Diversity of Culicoides in the middle belt of Ghana with Implications on the transmission of Mansonella perstans; a molecular approach
Creators: name: Debrah, Linda Batsa
name: Arthur, Joseph F.
name: Yeboah, Augustine
name: Owusu, Dorcas O.
name: Adankwah, Ernest
name: Acheampong, Isaac
name: Minadzi, Difery
name: Lamptey, Millicent
name: Opoku, Vera Serwaa
name: Aniagyei, Wilfred
name: Vivekanandan, Monika M.
name: Abass, Mohammed K.
name: Gawusu, Amidu
name: Wanji, Samuel
name: Debrah, Alexander Y.
name: Jacobsen, Marc
name: Phillips, Richard O.
Publisher: name: figshare
Year: 2024
Subjects: subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified

description: Additional file 2: Table S2. Preparation of 10× primer mix. FIP (forward inner primer), BIP (backward inner primer), F3 (forward outer primer), B3 (backward outer primer), LF (forward loop), LB (backward loop), µM (micromole), H2O (water).
sj-pdf-1-tai-10.1177_20499361211027390 – Supplemental material for Elevated glycohemoglobin is linked to critical illness in CoVID-19: a retrospective analysis
Creators: name: Windham, Samuel
name: Wilson, Melissa P.
name: Fling, Connor
name: Sheneman, David
name: Wand, Taylor
name: Babcock, Lyndsey
name: MaWhinney, Samantha
name: Erlandson, Kristine M.
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 111099 Nursing not elsewhere classified
subject: FOS: Health sciences
subject: 111403 Paediatrics
subject: FOS: Clinical medicine
subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: 111799 Public Health and Health Services not elsewhere classified
subject: 110203 Respiratory Diseases

description: Supplemental material, sj-pdf-1-tai-10.1177_20499361211027390 for Elevated glycohemoglobin is linked to critical illness in CoVID-19: a retrospective analysis by Samuel Windham, Melissa P. Wilson, Connor Fling, David Sheneman, Taylor Wand, Lyndsey Babcock, Samantha MaWhinney and Kristine M. Erlandson in Therapeutic Advances in Infectious Disease
Supplemental Material, sj-docx-1-roa-10.1177_01640275211027304 - Perceived Stress Predicts Subsequent Self-Reported Problems With Vision and Hearing: Longitudinal Findings From the German Ageing Survey
Creators: name: Wettstein, Markus
name: Wahl, Hans-Werner
name: Heyl, Vera
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 110308 Geriatrics and Gerontology
subject: FOS: Clinical medicine
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental Material, sj-docx-1-roa-10.1177_01640275211027304 for Perceived Stress Predicts Subsequent Self-Reported Problems With Vision and Hearing: Longitudinal Findings From the German Ageing Survey by Markus Wettstein, Hans-Werner Wahl and Vera Heyl in Research on Aging
sj-pdf-1-pom-10.1177_03057356211019477 – Supplemental material for Out of tune: Perceptions of, engagement with, and responses to mental health interventions by professional popular musicians—A scoping review
Creators: name: Visser, Amy
name: Lee, Megan
name: Barringham, Timothy
name: Salehi, Nasim
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: Education
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental material, sj-pdf-1-pom-10.1177_03057356211019477 for Out of tune: Perceptions of, engagement with, and responses to mental health interventions by professional popular musicians—A scoping review by Amy Visser, Megan Lee, Timothy Barringham and Nasim Salehi in Psychology of Music
sj-pdf-1-vmj-10.1177_1358863X211021918 – Supplemental material for North American lower-extremity revascularization and amputation during COVID-19: Observations from the Vascular Quality Initiative
Creators: name: Lou, Jun-Yang
name: Kennedy, Kevin F
name: Menard, Matthew T
name: Abbott, J Dawn
name: Secemsky, Eric A
name: Goodney, Philip P
name: Saad, Marwan
name: Soukas, Peter A
name: Hyder, Omar N
name: Aronow, Herbert D
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: Cardiology
subject: 110323 Surgery
subject: FOS: Clinical medicine

description: Supplemental material, sj-pdf-1-vmj-10.1177_1358863X211021918 for North American lower-extremity revascularization and amputation during COVID-19: Observations from the Vascular Quality Initiative by Jun-Yang Lou, Kevin F Kennedy, Matthew T Menard, J Dawn Abbott, Eric A Secemsky, Philip P Goodney, Marwan Saad, Peter A Soukas, Omar N Hyder and Herbert D Aronow in Vascular Medicine
sj-pdf-5-ijp-10.1177_00912174211028019 - Supplemental material for Impact of delirium on mortality in patients hospitalized for heart failure
Creators: name: Ritchie, Charlotte
name: Walters, Ryan W.
name: Ramaswamy, Sriram
name: Alla, Venkata M
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental material, sj-pdf-5-ijp-10.1177_00912174211028019 for Impact of delirium on mortality in patients hospitalized for heart failure by Charlotte Ritchie, Ryan W. Walters, Sriram Ramaswamy and Venkata M Alla in The International Journal of Psychiatry in Medicine
Additional file 3 of Diversity of Culicoides in the middle belt of Ghana with Implications on the transmission of Mansonella perstans; a molecular approach
Creators: name: Debrah, Linda Batsa
name: Arthur, Joseph F.
name: Yeboah, Augustine
name: Owusu, Dorcas O.
name: Adankwah, Ernest
name: Acheampong, Isaac
name: Minadzi, Difery
name: Lamptey, Millicent
name: Opoku, Vera Serwaa
name: Aniagyei, Wilfred
name: Vivekanandan, Monika M.
name: Abass, Mohammed K.
name: Gawusu, Amidu
name: Wanji, Samuel
name: Debrah, Alexander Y.
name: Jacobsen, Marc
name: Phillips, Richard O.
Publisher: name: figshare
Year: 2024
Subjects: subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified

description: Additional file 3: Table S3. Preparation of 20 µl reaction mix. Preparation of 10× primer mix. DNA (deoxyribonucleic acid), GuHCl (guanidine hydrochloride), µl (microliters).
Multiphasic and multifocal cryptococcal immune reconstitution inflammatory syndrome in an HIV-infected patient: interplay of infection and immunity
Creators: name: Katchanov, Juri
name: Zimmermann, Ulrike
name: Branding, Gordian
name: Tintelnot, Kathrin
name: Müller, Markus
name: Arastéh, Keikawus
name: Stocker, Hartmut
Publisher: name: Robert Koch-Institut, Infektionskrankheiten / Erreger
Year: 2013
Subjects: subject: Cryptococcus
subject: Pulmonary cryptococcoma
subject: Lymphadenitis
subject: HIV
subject: IRIS
subject: 610 Medizin

description: We report a case of cryptococcal immune reconstitution inflammatory syndrome affecting the lungs, and 10 months later the cervical lymph nodes, in the absence of cryptococcal meningitis, in advanced HIV infection. Our report demonstrates the organ-specificity of the timing of the inflammatory response and illustrates the organ-specific interplay of immunity and infection in cryptococcal disease.
Alter, Berufsgruppen und psychisches Wohlbefinden
Creators: name: Thielen, Karsten
name: Kroll, Lars Eric
Publisher: name: Robert Koch-Institut, Epidemiologie und Gesundheitsberichterstattung
Year: 2013
Subjects: subject: Mentale Gesundheit
subject: Beruf
subject: Alter
subject: Arbeitsfähigkeit
subject: Mental health
subject: Job group
subject: Age
subject: Work ability
subject: 610 Medizin

description: Die vorliegende Studie untersucht das psychische Wohlbefinden in unterschiedlichen Berufsgruppen nach Geschlecht und Alter. Es wurden Daten der Befragung „Gesundheit in Deutschland aktuell“ verwendet, die 2009/2010 vom Robert Koch-Institut durchgeführt wurde. Ausgewertet wurden die Angaben von 14.693 erwerbstätigen oder nicht erwerbstätigen Frauen und Männern im Alter von 18 bis 64 Jahren. Die Berufsgruppen wurden mit der Blossfeld-Klassifikation unterschieden. Psychisches Wohlbefinden wurde mit dem „Mental Health Inventory“ gemessen. Männer und Frauen in Berufen mit höherer Qualifizierung hatten ein besseres psychisches Wohlbefinden als weniger qualifizierte. Das geringste Wohlbefinden wiesen Frauen in Berufen mit einem hohen Anteil an Ungelernten auf. Das Wohlbefinden von Männern in der Altersgruppe 55 bis 64 Jahre war tendenziell in allen Berufsgruppen besser als bei den 45- bis 54-Jährigen. Bei Frauen war es mit höherem Alter tendenziell schlechter in Berufsgruppen mit geringer Qualifizierung und bei Semiprofessionen, aber unverändert oder besser in qualifizierten Berufen. Ursache hierfür könnte ein Ungleichgewicht zwischen arbeitsbedingten sowie familiären Belastungen der Frauen und ihren funktionellen Kapazitäten sein bei gleichzeitigem Mangel an Entlastung z. B. aufgrund ökonomischer Zwänge. Diese Belastungssituation kumuliert möglicherweise im höheren Erwerbsalter.
description: This study examines whether psychological well-being in different job groups is affected by gender and age. Data from the survey ‘Gesundheit in Deutschland aktuell’ were used, which was carried out during 2009/2010 by the Robert Koch Institute. Information was available for 14,693 employed and unemployed men and women aged 18–64 years. Job groups were differentiated according to the Blossfeld classification. Psychological well-being was measured with the Mental Health Inventory. Men and women in more qualified jobs had better well-being than those in less qualified work. The lowest well-being was found for women in job groups with a high amount of unskilled work. For all job groups, men aged 55–64 years tended to have better well-being than those aged 45–54 years. Among women of older age, there was a tendency for well-being to be lower in the unskilled and semiprofessional groups, but on the same level or better in the more qualified job groups. The reason for this might be the imbalance between the demands of work/personal life and the functional capacity of the individual, which especially applies to women and is further affected by a lack of relief, for example, because of economic pressure. This cumulative strain may be more evident in older working ages.
sj-pdf-1-cpx-10.1177_21677026211017834 – Supplemental material for A Hierarchical Taxonomy of Psychopathology (HiTOP) Primer for Mental Health Researchers
Creators: name: Conway, Christopher C.
name: Forbes, Miriam K.
name: South, Susan C.
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental material, sj-pdf-1-cpx-10.1177_21677026211017834 for A Hierarchical Taxonomy of Psychopathology (HiTOP) Primer for Mental Health Researchers by Christopher C. Conway, Miriam K. Forbes and Susan C. South in Clinical Psychological Science
sj-pdf-1-pun-10.1177_14624745211024342 - Supplemental material for Reparative justice: The final stage of decolonization
Creators: name: Agozino, Biko
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 160299 Criminology not elsewhere classified
subject: FOS: Law
subject: Sociology
subject: FOS: Sociology

description: Supplemental material, sj-pdf-1-pun-10.1177_14624745211024342 for Reparative justice: The final stage of decolonization by Biko Agozino in Punishment & Society
Staphylococcus aureus toxins – Their functions and genetics
Creators: name: Grumann, Dorothee
name: Nübel, Ulrich
name: Bröker, Barbara M.
Publisher: name: Robert Koch-Institut, Infektionskrankheiten / Erreger
Year: 2013
Subjects: subject: Epidemiology
subject: S. aureus
subject: Pore-forming toxins
subject: Exfoliative toxins
subject: Superantigens
subject: Evolution
subject: 610 Medizin

description: The outcome of encounters between Staphylococcus (S.) aureus and its human host ranges from life-threatening infection through allergic reactions to symptom-free colonization. The pan-genome of this bacterial species encodes numerous toxins, known or strongly suspected to cause specific diseases or symptoms. Three toxin families are in the focus of this review, namely (i) pore-forming toxins, (ii) exfoliative toxins and (iii) superantigens. The majority of toxin-encoding genes are located on mobile genetic elements (MGEs), resulting in a pronounced heterogeneity in the endowment with toxin genes of individual S. aureus strains. Recent population genomic analysis have provided a framework for an improved understanding of the temporal and spatial scales of the motility of MGEs and their associated toxin genes. The distribution of toxin genes among clonal lineages within the species S. aureus is not random, and phylogenetic (sub-)lineages within clonal complexes feature characteristic toxin signatures. When studying pathogenesis, this lineage association, which is caused by the clonal nature of S. aureus makes it difficult to discriminate effects of specific toxins from contributions of the genetic background and/or other associated genetic factors.
sj-pdf-3-ijp-10.1177_00912174211028019 - Supplemental material for Impact of delirium on mortality in patients hospitalized for heart failure
Creators: name: Ritchie, Charlotte
name: Walters, Ryan W.
name: Ramaswamy, Sriram
name: Alla, Venkata M
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental material, sj-pdf-3-ijp-10.1177_00912174211028019 for Impact of delirium on mortality in patients hospitalized for heart failure by Charlotte Ritchie, Ryan W. Walters, Sriram Ramaswamy and Venkata M Alla in The International Journal of Psychiatry in Medicine
When does $\aleph_1$-categoricity imply $ω$-stability?
Creators: name: Baldwin, John T.
name: Laskowski, M. C.
name: Shelah, Saharon
Publisher: name: arXiv
Year: 2023
Subjects: subject: Logic (math.LO)
subject: FOS: Mathematics
subject: 03C45

description: For an $\aleph_1$-categorical atomic class, we clarify the space of types over the unique model of size $\aleph_1$. Using these results, we prove that if such a class has a model of size $\beth_1^+$ then it is $ω$-stable.
description: 22 pages
A New Kim's Lemma
Creators: name: Kruckman, Alex
name: Ramsey, Nicholas
Publisher: name: arXiv
Year: 2023
Subjects: subject: Logic (math.LO)
subject: FOS: Mathematics

description: Kim's Lemma is a key ingredient in the theory of forking independence in simple theories. It asserts that if a formula divides, then it divides along every Morley sequence in type of the parameters. Variants of Kim's Lemma have formed the core of the theories of independence in two orthogonal generalizations of simplicity - namely, the classes of NTP2 and NSOP1 theories. We introduce a new variant of Kim's Lemma that simultaneously generalizes the NTP2 and NSOP1 variants. We explore examples and non-examples in which this lemma holds, discuss implications with syntactic properties of theories, and ask several questions.
description: Minor corrections and improvements. To appear in Model Theory
Multidisciplinary investigation of a multicountry outbreak of Salmonella Stanley infections associated with turkey meat in the European Union, August 2011 to January 2013
Creators: name: Kinross, P.
name: Alphen, L. Van
name: Urtaza, J. Martinez
name: Struelens, M.
name: Takkinen, J.
name: Coulombier, D.
name: Mäkelä, P.
name: Bertrand, S.
name: Mattheus, W.
name: Schmid, D.
name: Kanitz, E.
name: Rücker, V.
name: Krisztalovics, K.
name: Pászti, J.
name: Szögyényi, Z.
name: Lancz, Z.
name: Rabsch, Wolfgang
name: Pfefferkorn, B.
name: Hiller, P.
name: Mooijman, K.
name: Gossner, Celine
Publisher: name: Robert Koch-Institut, Infektionskrankheiten / Erreger
Year: 2014
Subjects: subject: 610 Medizin

description: Between August 2011 and January 2013, an outbreak of Salmonella enterica serovar Stanley (S. Stanley) infections affected 10 European Union (EU) countries, with a total of 710 cases recorded. Following an urgent inquiry in the Epidemic Intelligence Information System for food- and waterborne diseases (EPIS-FWD) on 29 June 2012, an international investigation was initiated including EU and national agencies for public health, veterinary health and food safety. Two of three local outbreak investigations undertaken by affected countries in 2012 identified turkey meat as a vehicle of infection. Furthermore, routine EU monitoring of animal sources showed that over 95% (n=298) of the 311 S. Stanley isolates reported from animal sampling in 2011 originated from the turkey food production chain. In 2004–10, none had this origin. Pulsed-field gel electrophoresis (PFGE) profile analysis of outbreak isolates and historical S. Stanley human isolates revealed that the outbreak isolates had a novel PFGE profile that emerged in Europe in 2011. An indistinguishable PFGE profile was identified in 346 of 464 human, food, feed, environmental and animal isolates from 16 EU countries: 102 of 112 non-human isolates tested were from the turkey production chain. On the basis of epidemiological and microbiological evidence, turkey meat was considered the primary source of human infection, following contamination early in the animal production chain.
Sparse graphs and the fixed points on type spaces property
Creators: name: Sullivan, Rob
Publisher: name: arXiv
Year: 2023
Subjects: subject: Logic (math.LO)
subject: FOS: Mathematics
subject: 03C15, 37B05, 20B27, 05C55, 05D10

description: We examine the topological dynamics of the automorphism groups of omega-categorical sparse graphs resulting from Hrushovski constructions. Specifically, we consider the fixed points on type spaces property, which a structure M has if, for each positive integer n, every Aut(M)-subflow of the space of n-types has a fixed point. Extending a result of Evans, Hubicka and Nesetril, we show that there exists an omega-categorical structure M, resulting from a Hrushovski construction, such that no omega-categorical expansion of M has the fixed points on type spaces property.
description: Final version - accepted to Model Theory
Singlet-triplet-state readout in silicon-metal-oxide-semiconductor double quantum dots
Creators: name: Ma, Rong-Long
name: Zhu, Sheng-Kai
name: Kong, Zhen-Zhen
name: Sun, Tai-Ping
name: Ni, Ming
name: Zhou, Yu-Chen
name: Zhou, Yuan
name: Luo, Gang
name: Cao, Gang
name: Wang, Gui-Lei
name: Li, Hai-Ou
name: Guo, Guo-Ping
Publisher: name: arXiv
Year: 2023
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: High-fidelity singlet-triplet state readout is essential for large-scale quantum computing. However, the widely used threshold method of comparing a mean value with the fixed threshold will limit the judgment accuracy, especially for the relaxed triplet state, under the restriction of relaxation time and signal-to-noise ratio. Here, we achieve an enhanced latching readout based on Pauli spin blockade in a Si-MOS double quantum dot device and demonstrate an average singlet-triplet state readout fidelity of 97.59% by the threshold method. We reveal the inherent deficiency of the threshold method for the relaxed triplet state classification and introduce machine learning as a relaxation-independent readout method to reduce the misjudgment. The readout fidelity for classifying the simulated single-shot traces can be improved to 99.67% by machine learning method, better than the threshold method of 97.54% which is consistent with the experimental result. This work indicates that machine learning method can be a strong potential candidate for alleviating the restrictions of stably achieving high-fidelity and high-accuracy singlet-triplet state readout in large-scale quantum computing.
description: 11 pages,11 figures,
sj-pdf-1-sco-10.1177_2050313X211027737 – Supplemental material for Effective management of advanced colon cancer genotyping microsatellite stable/microsatellite instable-low with Kirsten rat sarcoma viral oncogene mutation using nivolumab plus ipilimumab combined with regorafenib and irinotecan: A case report
Creators: name: Cui, Yingqiang
name: Ou, Yimeng
name: Luo, Yongping
name: Yu, Jiongbiao
name: Lin, Yiguang
name: Chen, Size
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 111708 Health and Community Services
subject: FOS: Health sciences
subject: Cardiology
subject: 110599 Dentistry not elsewhere classified
subject: FOS: Clinical medicine
subject: 110305 Emergency Medicine
subject: 110306 Endocrinology
subject: 110308 Geriatrics and Gerontology
subject: 110904 Neurology and Neuromuscular Diseases
subject: 111099 Nursing not elsewhere classified
subject: 111199 Nutrition and Dietetics not elsewhere classified
subject: 111299 Oncology and Carcinogenesis not elsewhere classified
subject: 110314 Orthopaedics
subject: 110604 Sports Medicine
subject: 110315 Otorhinolaryngology
subject: 111702 Aged Health Care
subject: 111403 Paediatrics
subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: 111799 Public Health and Health Services not elsewhere classified
subject: 110203 Respiratory Diseases
subject: 160807 Sociological Methodology and Research Methods
subject: FOS: Sociology
subject: 110323 Surgery
subject: 70706 Veterinary Medicine
subject: FOS: Veterinary sciences

description: Supplemental material, sj-pdf-1-sco-10.1177_2050313X211027737 for Effective management of advanced colon cancer genotyping microsatellite stable/microsatellite instable-low with Kirsten rat sarcoma viral oncogene mutation using nivolumab plus ipilimumab combined with regorafenib and irinotecan: A case report by Yingqiang Cui, Yimeng Ou, Yongping Luo, Jiongbiao Yu, Yiguang Lin and Size Chen in SAGE Open Medical Case Reports
Survival of Adults with Acute Lymphoblastic Leukemia in Germany and the United States
Creators: name: Pulte, Dianne
name: Jansen, Lina
name: Gondos, Adam
name: Katalinic, Alexander
name: Barnes, Benjamin
name: Ressing, Meike
name: Holleczek, Bernd
name: Eberle, Andrea
name: Brenner, Hermann
Publisher: name: Robert Koch-Institut, Epidemiologie und Gesundheitsberichterstattung
Year: 2014
Subjects: subject: Humans
subject: Female
subject: Male
subject: Adolescent
subject: Adult
subject: Aged
subject: Germany/epidemiology
subject: Middle Aged
subject: Survival Analysis
subject: Precursor Cell Lymphoblastic Leukemia-Lymphoma/mortality
subject: United States/epidemiology
subject: 610 Medizin

description: Background: Adulthood acute lymphoblastic leukemia (ALL) is a rare disease. In contrast to childhood ALL, survival for adults with ALL is poor. Recently, new protocols, including use of pediatric protocols in young adults, have improved survival in clinical trials. Here, we examine population level survival in Germany and the United States (US) to gain insight into the extent to which changes in clinical trials have translated into better survival on the population level. Methods: Data were extracted from the Surveillance, Epidemiology, and End Results database in the US and 11 cancer registries in Germany. Patients age 15–69 diagnosed with ALL were included. Period analysis was used to estimate 5-year relative survival (RS). Results: Overall 5-year RS was estimated at 43.4% for Germany and 35.5% for the US (p = 0.004), with a decrease in survival with increasing age. Survival was higher in Germany than the US for men (43.6% versus 37.7%, p = 0.002) but not for women (42.4% versus 40.3%, p>0.1). Five-year RS estimates increased in Germany and the US between 2002 and 2006 by 11.8 and 7.3 percent units, respectively (p = 0.02 and 0.04, respectively). Conclusions: Survival for adults with ALL continues to be low compared with that for children, but a substantial increase in 5-year survival estimates was seen from 2002 to 2006 in both Germany and the US. The reasons for the survival differences between both countries require clarification.
Beta-Lactam Antibiotics Stimulate Biofilm Formation in Non-Typeable Haemophilus influenzae by Up-Regulating Carbohydrate Metabolism
Creators: name: Wu, Siva
name: Li, Xiaojin
name: Gunawardana, Manjula
name: Maguire, Kathleen
name: Guerrero-Given, Debbie
name: Schaudinn, Christoph
name: Wang, Charles
name: Baum, Marc M.
name: Webster, Paul
Publisher: name: Robert Koch-Institut, Biologische Sicherheit
Year: 2014
Subjects: subject: Humans
subject: Female
subject: Male
subject: Adult
subject: Aged
subject: Middle Aged
subject: Risk Factors
subject: Young Adult
subject: Anti-HIV Agents/therapeutic use
subject: HIV Infections/epidemiology
subject: HIV Infections/virology
subject: Prevalence
subject: Genotype
subject: Cluster Analysis
subject: HIV-1/genetics
subject: Retrospective Studies
subject: HIV Infections/drug therapy
subject: HIV-1/drug effects
subject: Public Health Surveillance
subject: Microbial Sensitivity Tests
subject: HIV Infections/transmission
subject: Drug Resistance Viral/genetics
subject: Anti-HIV Agents/pharmacology
subject: Belgium/epidemiology
subject: Pregnancy
subject: 610 Medizin

description: Non-typeable Haemophilus influenzae (NTHi) is a common acute otitis media pathogen, with an incidence that is increased by previous antibiotic treatment. NTHi is also an emerging causative agent of other chronic infections in humans, some linked to morbidity, and all of which impose substantial treatment costs. In this study we explore the possibility that antibiotic exposure may stimulate biofilm formation by NTHi bacteria. We discovered that sub-inhibitory concentrations of beta-lactam antibiotic (i.e., amounts that partially inhibit bacterial growth) stimulated the biofilm-forming ability of NTHi strains, an effect that was strain and antibiotic dependent. When exposed to sub-inhibitory concentrations of beta-lactam antibiotics NTHi strains produced tightly packed biofilms with decreased numbers of culturable bacteria but increased biomass. The ratio of protein per unit weight of biofilm decreased as a result of antibiotic exposure. Antibiotic-stimulated biofilms had altered ultrastructure, and genes involved in glycogen production and transporter function were up regulated in response to antibiotic exposure. Down-regulated genes were linked to multiple metabolic processes but not those involved in stress response. Antibiotic-stimulated biofilm bacteria were more resistant to a lethal dose (10 µg/mL) of cefuroxime. Our results suggest that beta-lactam antibiotic exposure may act as a signaling molecule that promotes transformation into the biofilm phenotype. Loss of viable bacteria, increase in biofilm biomass and decreased protein production coupled with a concomitant up-regulation of genes involved with glycogen production might result in a biofilm of sessile, metabolically inactive bacteria sustained by stored glycogen. These biofilms may protect surviving bacteria from subsequent antibiotic challenges, and act as a reservoir of viable bacteria once antibiotic exposure has ended.
sj-pdf-1-prq-10.1177_10659129211026972 – Supplemental material for Catching My Anger: How Political Elites Create Angrier Citizens
Creators: name: Stapleton, Carey E.
name: Dawkins, Ryan
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 160607 International Relations
subject: FOS: Political science

description: Supplemental material, sj-pdf-1-prq-10.1177_10659129211026972 for Catching My Anger: How Political Elites Create Angrier Citizens by Carey E. Stapleton and Ryan Dawkins in Political Research Quarterly
Segmentation of Confocal Raman Microspectroscopic Imaging Data Using Edge-Preserving Denoising and Clustering
Creators: name: Alexandrov, Theodore
name: Lasch, Peter
Publisher: name: Robert Koch-Institut, Biologische Sicherheit
Year: 2013
Subjects: subject: Animals
subject: Female
subject: Cluster Analysis
subject: Cricetinae
subject: Spectrometry Mass Matrix-Assisted Laser Desorption-Ionization/methods
subject: Brain/metabolism
subject: Databases Factual
subject: Mesocricetus
subject: Microscopy Confocal/methods
subject: Spectrum Analysis Raman/methods
subject: 610 Medizin

description: Over the past decade, confocal Raman microspectroscopic (CRM) imaging has matured into a useful analytical tool to obtain spatially resolved chemical information on the molecular composition of biological samples and has found its way into histopathology, cytology, and microbiology. A CRM imaging data set is a hyperspectral image in which Raman intensities are represented as a function of three coordinates: a spectral coordinate λ encoding the wavelength and two spatial coordinates x and y. Understanding CRM imaging data is challenging because of its complexity, size, and moderate signal-to-noise ratio. Spatial segmentation of CRM imaging data is a way to reveal regions of interest and is traditionally performed using nonsupervised clustering which relies on spectral domain-only information with the main drawback being the high sensitivity to noise. We present a new pipeline for spatial segmentation of CRM imaging data which combines preprocessing in the spectral and spatial domains with k-means clustering. Its core is the preprocessing routine in the spatial domain, edge-preserving denoising (EPD), which exploits the spatial relationships between Raman intensities acquired at neighboring pixels. Additionally, we propose to use both spatial correlation to identify Raman spectral features colocalized with defined spatial regions and confidence maps to assess the quality of spatial segmentation. For CRM data acquired from midsagittal Syrian hamster (Mesocricetus auratus) brain cryosections, we show how our pipeline benefits from the complex spatial-spectral relationships inherent in the CRM imaging data. EPD significantly improves the quality of spatial segmentation that allows us to extract the underlying structural and compositional information contained in the Raman microspectra.
Supplemental Material, sj-pdf-1-mrj-10.1177_00222437211021835 - Increasing Team Performance by Sharing Success
Creators: name: Chen, Hua
name: Chung, Kevin
Publisher: name: SAGE Journals
Year: 2021
Subjects: Hospitality Management

description: Supplemental Material, sj-pdf-1-mrj-10.1177_00222437211021835 for Increasing Team Performance by Sharing Success by Hua Chen and Kevin Chung in Journal of Marketing Research
HumanMimic: Learning Natural Locomotion and Transitions for Humanoid Robot via Wasserstein Adversarial Imitation
Creators: name: Tang, Annan
name: Hiraoka, Takuma
name: Hiraoka, Naoki
name: Shi, Fan
name: Kawaharazuka, Kento
name: Kojima, Kunio
name: Okada, Kei
name: Inaba, Masayuki
Publisher: name: arXiv
Year: 2023
Subjects: subject: Robotics (cs.RO)
subject: FOS: Computer and information sciences

description: Transferring human motion skills to humanoid robots remains a significant challenge. In this study, we introduce a Wasserstein adversarial imitation learning system, allowing humanoid robots to replicate natural whole-body locomotion patterns and execute seamless transitions by mimicking human motions. First, we present a unified primitive-skeleton motion retargeting to mitigate morphological differences between arbitrary human demonstrators and humanoid robots. An adversarial critic component is integrated with Reinforcement Learning (RL) to guide the control policy to produce behaviors aligned with the data distribution of mixed reference motions. Additionally, we employ a specific Integral Probabilistic Metric (IPM), namely the Wasserstein-1 distance with a novel soft boundary constraint to stabilize the training process and prevent mode collapse. Our system is evaluated on a full-sized humanoid JAXON in the simulator. The resulting control policy demonstrates a wide range of locomotion patterns, including standing, push-recovery, squat walking, human-like straight-leg walking, and dynamic running. Notably, even in the absence of transition motions in the demonstration dataset, robots showcase an emerging ability to transit naturally between distinct locomotion patterns as desired speed changes.
sj-pdf-2-qch-10.1177_0272684X211025932 - Supplemental material for Relationship Between Achievement Motivation, Mental Health and Academic Success in University Students
Creators: name: Mahdavi, Parinaz
name: Valibeygi, Adib
name: Moradi, Masoud
name: Sadeghi, Shahram
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 111799 Public Health and Health Services not elsewhere classified
subject: FOS: Health sciences

description: Supplemental material, sj-pdf-2-qch-10.1177_0272684X211025932 for Relationship Between Achievement Motivation, Mental Health and Academic Success in University Students by Parinaz Mahdavi, Adib Valibeygi, Masoud Moradi and Shahram Sadeghi in International Quarterly of Community Health Education
Soluble MICB protein levels and platelet counts during hepatitis B virus infection and response to hepatocellular carcinoma treatment
Creators: name: Tong, Hoang Van
name: Song, Le Huu
name: Hoan, Nghiem Xuan
name: Cuong, Bui Khac
name: Sy, Bui Tien
name: Son, Ho Anh
name: Quyet, Do
name: Binh, Vu Quoc
name: Kremsner, Peter G.
name: Bock, Thomas
name: Velavan, Thirumalaisamy P.
name: Toan, Nguyen Linh
Publisher: name: Robert Koch-Institut, Infektionskrankheiten / Erreger
Year: 2015
Subjects: subject: Hepatitis B
subject: Soluble MICB protein
subject: Hepatocellular carcinoma
subject: Cancer treatment
subject: Platelet counts
subject: 610 Medizin

description: Background: The human major histocompatibility complex class I polypeptide-related sequence B (MICB) is a protein that modulates the NK and T cell activation through the NKG2D receptor and is related to several diseases including cancer. Methods: The study investigated the prognostic role of soluble MICB (sMICB) protein in the progression of HBV-related liver diseases and to HBV-related HCC treatment. The sMICB serum levels were measured in 266 chronic HBV-infected Vietnamese patients and in healthy controls, and correlated with clinical and laboratory parameters and with therapeutic interventions for HBV-related HCC. Results: Significant differences in both clinical and laboratory parameters were observed among the patient groups with different stages of hepatitis. The platelet counts were significantly decreased with disease progression (P
Additional file 3 of Cryopreserved cGMP-compliant human pluripotent stem cell-derived hepatic progenitors rescue mice from acute liver failure through rapid paracrine effects on liver cells
Creators: name: Gantier, Malika
name: Rispal, Raphaël
name: Fourrier, Angélique
name: Ménoret, Séverine
name: Delbos, Frédéric
name: Anegon, Ignacio
name: Nguyen, Tuan Huy
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Virology

description: Additional file 3. Figure S1. Immune profile of GStemHep. Quantification of MHC class I (HLA-ABC) and class II (HLA-DR) molecules in the PSC cell line and GStemHep production batches (n=8, each dot represents a cell batch) by flow cytometry
Development and deployment of electronic medical records for better patient cancer care: an initiative by the National Cancer Grid, India
Creators: name: Pramesh, CS
name: Koita, Rizwan
name: Sengar, Manju
name: Shah, Nikesh
name: Das, Anthony Vipin
name: Anandampillai, Kiran
name: Nayak, Prakash Kumar
name: Pai, Prathamesh
name: Kadam, Amrut
name: Mallick, Indranil
name: Bhargava, Prabhat
name: Penumadu, Prasanth
name: Nair, Chandran
name: Borthakur, Bibhuti
name: M, Aarish
name: Bagri, Geetu
name: Ghosh-Laskar, Sarbani
name: Tibdewal, Anil
name: Balasubramani, Latha
name: Jain, Abhishek
name: Jandial, Aditya
name: Prakash, Gagan
name: Teli, Nilesh
name: Kayal, Smita
name: Goel, Surbahi
name: Mayekar, Krupa
name: Ranganathan, Priya
name: Agrawal, Vandana
name: Shetmahajan, Madhavi
name: Ambulkar, Reshma
name: Deodhar, Jayita K.
name: Chatterjee, Aparna
name: Bansal, Mukesh
Publisher: name: figshare
Year: 2025
Subjects: classificationCode: 420302
subject: Digital health
classificationCode: 420308
subject: Health informatics and information systems

description: The National Cancer Grid, a network of > 360 cancer organizations in India, initiated an effort to develop EMRs with specialized oncology capabilities with the help of a multidisciplinary team comprising oncologists, experts in information technology and digital health and policymakers. The process used a structured and consultative approach to define EMR requirements (functional-162, non-functional-54) and categorized them in three grades (silver, gold and platinum) based on sophistication of the requirements and effort needed to develop them. Vendor empanelment was done through a systematic, rigorous process to select those with high-level of product maturity, willingness to work with the NCG team, and ability to develop the listed requirements and deploy at low cost. Simultaneously, subcommittees developed clinical modules, standardized data capture forms, data dictionary, interoperability standards and user-interface design to refine six empanelled EMR solutions. To promote EMR adoption, NCG initiated an early adopter program to provide financial and technical assistance which has led to successful deployment in sixteen NCG hospitals.
Newbits - Benchmarking Its Innovation Diffusion And Its Production Processes Eu Vs. Usa
Creators: name: Ciccarelli, Gennaro
name: Enei, Riccardo
Publisher: name: Zenodo
Year: 2018
Subjects: ITS, Intelligent Transport Systems, Benchmark, EU, US, CAV, MaaS, Mobility-as-a-Service, Sharing Mobility, Innovation diffusion

description: This project deliverable provides a benchmark analysis of Intelligent Transport Systems (ITS) innovation diffusion in the EU and US. Three key areas of ITS innovation: (1) Sharing Mobility, (2) Mobility-as-a-Service (MaaS), and (3) Connected and Autonomous Vehicles (CAV’s) are analysed in order to benchmark innovation diffusion patterns in both regions. The results in the EU and US contexts stress the importance of the support from local authorities (sharing mobility), the need to overcome the critical mass barrier by making massive use of tracking technologies (MaaS) and the further challenges posed by the need for better regulatory actions (CAV’s). The analysis also supports a categorisation of success determinants and explores future opportunities and threats.
Additional file 4 of Cryopreserved cGMP-compliant human pluripotent stem cell-derived hepatic progenitors rescue mice from acute liver failure through rapid paracrine effects on liver cells
Creators: name: Gantier, Malika
name: Rispal, Raphaël
name: Fourrier, Angélique
name: Ménoret, Séverine
name: Delbos, Frédéric
name: Anegon, Ignacio
name: Nguyen, Tuan Huy
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Virology

description: Additional file 4. Figure S2. Cryopreservation of GStemHep. After 10 days of differentiation, GStemHep cells were harvested and frozen in a cryopreservation solution. The hepatic phenotype was analyzed after thawing on one production. (A) RT‒qPCR and (B) FACS analysis of key marker expression in a cell production batch before and after freezing
Fractional Chern Insulators vs. Non-Magnetic States in Twisted Bilayer MoTe$_2$
Creators: name: Yu, Jiabin
name: Herzog-Arbeitman, Jonah
name: Wang, Minxuan
name: Vafek, Oskar
name: Bernevig, B. Andrei
name: Regnault, Nicolas
Publisher: name: arXiv
Year: 2023
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Fractionally filled Chern bands with strong interactions may give rise to fractional Chern insulator (FCI) states, the zero-field analogue of the fractional quantum Hall effect. Recent experiments have demonstrated the existence of FCIs in twisted bilayer MoTe$_2$ without external magnetic fields -- most robust at $ν=-2/3$ -- as well as Chern insulators (CIs) at $ν=-1$. Although the appearance of both of these states is theoretically natural in an interacting topological system, experiments repeatedly observe nonmagnetic states (lacking FCIs) at $ν=-1/3$ and $-4/3$, a puzzling result which has not been fully theoretically explained. In this work, we perform Hartree-Fock and exact diagonalization calculations to test whether the standard MoTe$_2$ moiré model with the (greatly varying) parameter values available in the literature can reproduce the non-magnetic states at $ν=-1/3$ and $-4/3$ in unison with the FCI at $ν=-2/3$ and CI state at $ν= -1$. We focus on the experimentally relevant twist angles and, crucially, include remote bands. We find that the parameters proposed in [Wang et al. (2023)] can nearly capture the experimental phenomena at $ν=-1/3,-2/3,-1,-4/3$ simultaneously, though the predicted ground states at $ν=-1/3$ are still mostly fully-spin-polarized and a larger dielectric constant $ε>10$ than is typical of hexagonal boron nitride (h-BN) substrate $ε\sim 6$ is required. Our results show the importance of remote bands in identifying the competing magnetic orders and lay the groundwork for further study of the realistic phase diagram.
description: 16+32 pages, 10+28 figures, 2+1 tables