cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
title: Viruses of protozoan parasites and viral therapy: Is the time now right?
Creators: name: Barrow, Paul
name: Dujardin, Jean-Claude
name: Fasel, Nicolas
name: Greenwood, Alex D.
name: Osterrieder, Klaus
name: Lomonossoff, George
name: Fiori, Pier Luigi
name: Atterbury, Robert
name: Rossi, Matteo
name: Lalle, Marco
Publisher: name: Freie Universität Berlin
Year: 2020
Subjects: subject: Parasite
subject: Virus
subject: dsRNA
subject: Therapy
subject: Virus-like particles
classificationCode: 630
subject: Landwirtschaft und verwandte Bereiche

description: Infections caused by protozoan parasites burden the world with huge costs in terms of human and animal health. Most parasitic diseases caused by protozoans are neglected, particularly those associated with poverty and tropical countries, but the paucity of drug treatments and vaccines combined with increasing problems of drug resistance are becoming major concerns for their control and eradication. In this climate, the discovery/repurposing of new drugs and increasing effort in vaccine development should be supplemented with an exploration of new alternative/synergic treatment strategies. Viruses, either native or engineered, have been employed successfully as highly effective and selective therapeutic approaches to treat cancer (oncolytic viruses) and antibiotic-resistant bacterial diseases (phage therapy). Increasing evidence is accumulating that many protozoan, but also helminth, parasites harbour a range of different classes of viruses that are mostly absent from humans. Although some of these viruses appear to have no effect on their parasite hosts, others either have a clear direct negative impact on the parasite or may, in fact, contribute to the virulence of parasites for humans. This review will focus mainly on the viruses identified in protozoan parasites that are of medical importance. Inspired and informed by the experience gained from the application of oncolytic virus- and phage-therapy, rationally-driven strategies to employ these viruses successfully against parasitic diseases will be presented and discussed in the light of the current knowledge of the virus biology and the complex interplay between the viruses, the parasite hosts and the human host. We also highlight knowledge gaps that should be addressed to advance the potential of virotherapy against parasitic diseases.
sj-docx-1-anp-10.1177_00048674211065999 – Supplemental material for Emergency department visits for self-harm in adolescents after release of the Netflix series ‘13 Reasons Why’
Creators: name: Sinyor, Mark
name: Mallia, Emilie
name: de Oliveira, Claire
name: Schaffer, Ayal
name: Niederkrotenthaler, Thomas
name: Zaheer, Juveria
name: Mitchell, Rachel
name: Rudoler, David
name: Kurdyak, Paul
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: FOS: Clinical medicine
subject: Neuroscience

description: Supplemental material, sj-docx-1-anp-10.1177_00048674211065999 for Emergency department visits for self-harm in adolescents after release of the Netflix series ‘13 Reasons Why’ by Mark Sinyor, Emilie Mallia, Claire de Oliveira, Ayal Schaffer, Thomas Niederkrotenthaler, Juveria Zaheer, Rachel Mitchell, David Rudoler and Paul Kurdyak in Australian & New Zealand Journal of Psychiatry
Soome sild neuroloogias. Koostöö alates 1973. aastast
Creators: name: Kaasik, Ain-Elmar
name: Sinisalu, Väino
Publisher: name: Eesti Arst
Year: 2011
Subjects: meditsiini ajalugu, Helsingi ja Tartu koostöö, neuroloogia

description: Meie ei tarvitse üksteist idealiseerida, me teame, et aeg-ajalt meie vahel väärmõistmist ja lahkuminekut võib sündida, kuid niisama kindlasti teame – meil ei ole kedagi teist peale soomlaste ja soomlastel ei ole kedagi teist peale meie. Me peame üksteisega läbi ajama. 
 (Friedebert Tuglas, „Soome sild“, kogumikust „Aja kaja“, 1919)
 Eesti kirjandusklassiku ligi aastasaja eest kirja pandud mõtted ei pruugi tänapäeva maailmas täiel määral kehtida. Toona üsnagi piiratud kontakte võimaldanud maailm on muutunud avatuks. Samas on Soome võimaldanud eestlastele vaadata sinna, kuhu meie pilk muidu ei oleks ulatunud. Käesolevas essees on püütud meenutada ja analüüsida üht niisugust võimalust.


 Eesti Arst 2011; 90(6):274–279
description: Eesti Arst, Juuni 2011
title: Peg Solitaire on Cartesian Products of Graphs
Creators: name: Kreh, Martin
name: Wiljes, Jan-Hendrik De
Publisher: name: Freie Universität Berlin
Year: 2021
Subjects: subject: Peg solitaire
subject: Cartesian product
subject: Star graph
subject: Ladder graph
subject: Grid graph
classificationCode: 510
subject: Mathematik

description: In 2011, Beeler and Hoilman generalized the game of peg solitaire to arbitrary connected graphs. In the same article, the authors proved some results on the solvability of Cartesian products, given solvable or distance 2-solvable graphs. We extend these results to Cartesian products of certain unsolvable graphs. In particular, we prove that ladders and grid graphs are solvable and, further, even the Cartesian product of two stars, which in a sense are the "most" unsolvable graphs.
Openaire2020 D4.2 - Support Kit For Oa Policy In H2020
Creators: name: Kuchma, Iryna
name: Franck, Gwen
Publisher: name: Zenodo
Year: 2015
Subjects: scholarly communication

description: This deliverable presents the Support kit – a set of materials, FAQs, briefing papers, webinar recordings that help to understand and comply with Open Access to publications mandate in Horizon 2020. Target audience: researchers, project coordinators, research administrators, repository managers and librarians coordinating Horizon 2020 funded projects.
Moralising extended reality technologies:The ethics of XR in research settings
Creators: name: Voinov, Cristiana
Publisher: name: Zenodo
Year: 2024
Subjects: ethics of immersive technology
research integrity
research ethics
OPERAS2024

description: It goes without saying that research assessing and addressing the impact of immersive technologies (XR) like virtual reality (VR) and augmented reality (AR) needs doing. Impact research thus far has widely focused on neuro-cognitive and psycho-behavioral aspects, such as how XR – VR especially – may alter mental states or enhance skill retention, for example. More recently, scholars have begun tending to the less empirical dimensions of XR use, such as its socio-legal and philosophical implications. While this turn has been encouraging, there is still much work to be done. A domain with particularly modest scholarly engagement is that which explores the ethical development, implementation, and use of XR within research or academic settings. How should researchers be using this technology? Little is known about how researchers should establish, interpret and practice XR ethics, and how current ethics instruments, tasked with guiding ethical practice, meet the unique ethical challenges posed by XR use. Therefore, my presentation will focus on the ethical challenges of conducting research using immersive technology. The aim is to establish a descriptive account of the norms and principles associated with XR use in research contexts specifically, in both philosophy of technology literature as well as key European research policy documents. This will provide the foundation for an exploration of what and how researchers actually “apply” ethics within an XR context – how they interact with ethics instruments, how they understand, interpret and then apply ethics when using XR. I will show how inherent features of XR such as the scale and type of data it can gather, as well as the difficulty – perhaps impossibility – of effectively anonymizing this data, is in tension with common research integrity values espoused by instruments such as the European Code of Conduct. The hyper-intimacy of VR, its ability to track and store details about a research participant to a much greater extent than other technologies, poses a unique challenge to the Open Science paradigm where data accessibility and sharing is highly valued. I will claim that research integrity instruments alone are insufficient to address the problems posed by XR technologies, and offer preliminary paths towards ethical XR use in research settings.
sj-pdf-1-anp-10.1177_00048674211067720 – Supplemental material for Trends in prescription of psychotropic medications to children and adolescents in Australian primary care from 2011 to 2018
Creators: name: Klau, Julie
name: Bernardo, Carla De Oliveira
name: Gonzalez-Chica, David Alejandro
name: Raven, Melissa
name: Jureidini, Jon
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: FOS: Clinical medicine
subject: Neuroscience

description: Supplemental material, sj-pdf-1-anp-10.1177_00048674211067720 for Trends in prescription of psychotropic medications to children and adolescents in Australian primary care from 2011 to 2018 by Julie Klau, Carla De Oliveira Bernardo, David Alejandro Gonzalez-Chica, Melissa Raven and Jon Jureidini in Australian & New Zealand Journal of Psychiatry
Additional file 2 of Paracrine activin B-NF-κB signaling shapes an inflammatory tumor microenvironment in gastric cancer via fibroblast reprogramming
Creators: name: Jin, Yangbing
name: Cai, Qu
name: Wang, Lingquan
name: Ji, Jun
name: Sun, Ying
name: Jiang, Jinling
name: Wang, Chao
name: Wu, Junwei
name: Zhang, Benyan
name: Zhao, Liqin
name: Qi, Feng
name: Yu, Beiqin
name: Zhang, Jun
Publisher: name: figshare
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Science Policy
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer

description: Supplementary Material 2
Pärilik hemorraagiline teleangiektaasia: pulmonaalsed manifestatsioonid
Creators: name: Melnikova, Renata
name: Jaanus, Martti
name: Kliiman, Kai
name: Altraja, Alan
Publisher: name: Eesti Arst
Year: 2011
Subjects: pärilik hemorraagiline teleangiektaasia, veresoonte malformatsioonid, diagnostika, ravi

description: Pärilik hemorraagiline teleangiektaasia (HHT) ehk Rendu-Osleri-Weberi tõbi on harva esinev ning aladiagnoositud pärilik haigus, millele on iseloomulikud veresoonte malformatsioonid ninas, suulimaskestas, ajus, maksas, gastrointestinaaltraktis, nahas ja kopsudes. Pulmonaalsete arteriovenoossete malformatsioonide (PAVM) kaudu liigub veri kopsuringest kapillaare läbimata süsteemsesse vereringesse, millest on omakorda tingitud hüpokseemia ja embooliad süsteemses vereringes. Viimased võivad olla isheemia ja abstsesside põhjuseks, eeskätt peaajus. Artiklis on toodud ülevaade HHT etioloogiast, patogeneesist, diagnostikast (k.a sõeluuringute näidustused) ja ravi põhimõtetest, keskendudes PAVMile. Peamiselt juurdetoova arteriaalse soone sulgemisel põhineva PAVMi ravi põhieesmärgid on komplikatsioonide ennetamine ja hüpokseemia korrigeerimine. Patsientide ravijärgseks jälgimiseks on olemas ajakohastatud käsitlusjuhendid. Lisaks on artiklis esitatud 2 haigusjuhtu, kus PAVM oli diagnoositud alles tüsistuste tekke tõttu.


 Eesti Arst 2011; 90(6):280–289
description: Eesti Arst, Juuni 2011
title: Reinforcement learning and Bayesian data assimilation for model‐informed precision dosing in oncology
Creators: name: Maier, Corinna
name: Hartung, Niklas
name: Kloft, Charlotte
name: Huisinga, Wilhelm
name: Wiljes, Jana De
Publisher: name: Freie Universität Berlin
Year: 2021
Subjects: subject: precision dosing
subject: oncology
subject: therapeutic drug
classificationCode: 570
subject: Biowissenschaften; Biologie

description: Model-informed precision dosing (MIPD) using therapeutic drug/biomarker monitoring offers the opportunity to significantly improve the efficacy and safety of drug therapies. Current strategies comprise model-informed dosing tables or are based on maximum a posteriori estimates. These approaches, however, lack a quantification of uncertainty and/or consider only part of the available patient-specific information. We propose three novel approaches for MIPD using Bayesian data assimilation (DA) and/or reinforcement learning (RL) to control neutropenia, the major dose-limiting side effect in anticancer chemotherapy. These approaches have the potential to substantially reduce the incidence of life-threatening grade 4 and subtherapeutic grade 0 neutropenia compared with existing approaches. We further show that RL allows to gain further insights by identifying patient factors that drive dose decisions. Due to its flexibility, the proposed combined DA-RL approach can easily be extended to integrate multiple end points or patient-reported outcomes, thereby promising important benefits for future personalized therapies.
sj-pdf-1-asp-10.1177_00037028211056293 – Supplemental Material for Beyond Beer’s Law: Quasi-Ideal Binary Liquid Mixtures
Creators: name: Mayerhöfer, Thomas G.
name: Ilchenko, Oleksii
name: Kutsyk, Andrii
name: Popp, Jürgen
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 99999 Engineering not elsewhere classified
subject: FOS: Other engineering and technologies

description: Supplemental Material, sj-pdf-1-asp-10.1177_00037028211056293 for Beyond Beyond Beer’s Law: Quasi-Ideal Binary Liquid Mixtures by Thomas G. Mayerhöfer, Oleksii Ilchenko, Andrii Kutsyk and Jürgen Popp in Applied Spectroscopy
sj-docx-1-pid-10.1177_09544070211063082 – Supplemental material for Rear boot swing door closing effort: Calculations, objective and subjective evaluations in an LCV model
Creators: name: Altinisik, Armagan
name: Bolova, Emre
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 99999 Engineering not elsewhere classified
subject: FOS: Other engineering and technologies

description: Supplemental material, sj-docx-1-pid-10.1177_09544070211063082 for Rear boot swing door closing effort: Calculations, objective and subjective evaluations in an LCV model by Armagan Altinisik and Emre Bolova in Proceedings of the Institution of Mechanical Engineers, Part D: Journal of Automobile Engineering
Additional file 1 of Patient-perceived barriers to early initiation of prenatal care at a large, urban federally qualified health center: a mixed-methods study
Creators: name: Holt, Valerie N.
name: Pelegrí, Elan
name: Hardy, Mary
name: Buchin, Lindsey
name: Dapkins, Isaac
name: Chuang, Meleen
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences

description: Supplementary Material 1.
sj-pdf-1-cdq-10.1177_15257401211067940 – Supplemental material for Exploratory Study of Hybrid Telepractice and In-Person Treatment of Compensatory Articulation Errors in Cleft Palate
Creators: name: Kotlarek, Katelyn J.
name: Haenssler, Abigail E.
name: Perry, Jamie L.
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: Education
subject: 200399 Language Studies not elsewhere classified
subject: FOS: Languages and literature
subject: 130312 Special Education and Disability
subject: FOS: Educational sciences

description: Supplemental material, sj-pdf-1-cdq-10.1177_15257401211067940 for Exploratory Study of Hybrid Telepractice and In-Person Treatment of Compensatory Articulation Errors in Cleft Palate by Katelyn J. Kotlarek, Abigail E. Haenssler and Jamie L. Perry in Communication Disorders Quarterly
title: Seasonal Adjustment of Weekly Data
Creators: name: Mollins, Jeffrey
name: Lumb, Rachit
Publisher: name: Bank of Canada
publisherIdentifier: https://ror.org/05cc98565
publisherIdentifierScheme: ROR
Year: 2024

description: This paper summarizes and assesses several of the most popular methods to seasonally adjust weekly data. The industry standard approach, known as X-13ARIMA-SEATS, is suitable only for monthly or quarterly data. Given the increased availability and promise of non-traditional data at higher frequencies, alternative approaches are required to extract relevant signals for monitoring and analysis. This paper reviews four such methods for high-frequency seasonal adjustment. We find that tuning the parameters of each method helps deliver a properly adjusted series. We optimize using a grid search and test for residual seasonality in each series. While no method works perfectly for every series, some methods are generally effective at removing seasonality in weekly data, despite the increased difficulty of accounting for the shock of the COVID-19 pandemic. Because seasonally adjusting high-frequency data is typically a difficult task, we recommend closely inspecting each series and comparing results from multiple methods whenever possible.
description: Dans cette étude, nous présentons et évaluons les méthodes les plus répandues pour désaisonnaliser des données hebdomadaires. L’approche standard de l’industrie, connue sous le nom de X-13ARIMA-SEATS, se prête seulement aux données mensuelles et trimestrielles. Compte tenu de la disponibilité accrue et du grand potentiel des données non traditionnelles de plus haute fréquence, d’autres approches doivent être envisagées pour extraire des signaux utiles au suivi de l’économie et à l’analyse de l’information. Cette étude examine donc quatre méthodes de désaisonnalisation des données de haute fréquence. Nous constatons que le calibrage des paramètres de chaque méthode permet d’obtenir une série correctement ajustée. Nous optimisons le processus en utilisant une méthode de recherche par quadrillage et procédons à des tests destinés à détecter la présence d’une saisonnalité résiduelle dans chaque série. Bien qu’aucune méthode ne convienne parfaitement à toutes les séries, certaines s’avèrent généralement efficaces pour supprimer les variations saisonnières des données hebdomadaires – malgré la difficulté accrue qu’impose le fait de devoir tenir compte du choc de la pandémie de COVID-19. Puisqu’il est souvent difficile de désaisonnaliser des données de haute fréquence, nous recommandons d’examiner de près chaque série et, si possible, de comparer les résultats de diverses méthodes.
title: Whole transcriptomic network analysis using Co-expression Differential Network Analysis (CoDiNA)
Creators: name: Morselli Gysi, Deisy
name: Miranda Fragoso, Tiago De
name: Zebardast, Fatemeh
name: Bertoli, Wesley
name: Busskamp, Volker
name: Almaas, Eivind
name: Nowick, Katja
Publisher: name: Freie Universität Berlin
Year: 2020
Subjects: subject: gene-expression
subject: r package
subject: tool
subject: modularity
subject: diseases
subject: maps
classificationCode: 570
subject: Biowissenschaften; Biologie

description: Biological and medical sciences are increasingly acknowledging the significance of gene co-expression-networks for investigating complex-systems, phenotypes or diseases. Typically, complex phenotypes are investigated under varying conditions. While approaches for comparing nodes and links in two networks exist, almost no methods for the comparison of multiple networks are available and-to best of our knowledge-no comparative method allows for whole transcriptomic network analysis. However, it is the aim of many studies to compare networks of different conditions, for example, tissues, diseases, treatments, time points, or species. Here we present a method for the systematic comparison of an unlimited number of networks, with unlimited number of transcripts:Co-expression Differential Network Analysis (CoDiNA). In particular, CoDiNA detects linksandnodes that are common, specific or different among the networks. We developed a statistical framework to normalize between these different categories of common or changed network links and nodes, resulting in a comprehensive network analysis method, more sophisticated than simply comparing the presence or absence of network nodes. Applying CoDiNA to a neurogenesis study we identified candidate genes involved in neuronal differentiation. We experimentally validated one candidate, demonstrating that its overexpression resulted in a significant disturbance in the underlying gene regulatory network of neurogenesis. Using clinical studies, we compared whole transcriptome co-expression networks from individuals with or without HIV and active tuberculosis (TB) and detected signature genes specific to HIV. Furthermore, analyzing multiple cancer transcription factor (TF) networks, we identified common and distinct features for particular cancer types. These CoDiNA applications demonstrate the successful detection of genes associated with specific phenotypes. Moreover, CoDiNA can also be used for comparing other types of undirected networks, for example, metabolic, protein-protein interaction, ecological and psychometric networks. CoDiNA is publicly available as anRpackage in CRAN (https://CRAN. R-project.org/package=CoDiNA).
Additional file 2 of Demographic and clinical characteristics associated with advanced stage colorectal cancer: a registry-based cohort study in Saudi Arabia
Creators: name: Alsadhan, Norah
name: Alhurishi, Sultana A
name: Pujades-Rodriguez, Mar
name: Shuweihdi, Farag
name: Brennan, Cathy
name: West, Robert M
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: Computational Biology

description: Supplementary Material 2: Supplemental Results File
title: Tight cohesion between glycolipid membranes results from balanced water–headgroup interactions
Creators: name: Kanduč, Matej
name: Schlaich, Alexander
name: Vries, Alex H. De
name: Jouhet, Juliette
name: Maréchal, Eric
name: Demé, Bruno
name: Netz, Roland R.
name: Schneck, Emanuel
Publisher: name: Freie Universität Berlin
Year: 2017
Subjects: subject: Biological physics
subject: Membrane biophysics
subject: glycolipid membranes
classificationCode: 530
subject: Physik

description: Membrane systems that naturally occur as densely packed membrane stacks contain high amounts of glycolipids whose saccharide headgroups display multiple small electric dipoles in the form of hydroxyl groups. Experimentally, the hydration repulsion between glycolipid membranes is of much shorter range than that between zwitterionic phospholipids whose headgroups are dominated by a single large dipole. Using solvent-explicit molecular dynamics simulations, here we reproduce the experimentally observed, different pressure-versus-distance curves of phospholipid and glycolipid membrane stacks and show that the water uptake into the latter is solely driven by the hydrogen bond balance involved in non-ideal water/sugar mixing. Water structuring effects and lipid configurational perturbations, responsible for the longer-range repulsion between phospholipid membranes, are inoperative for the glycolipids. Our results explain the tight cohesion between glycolipid membranes at their swelling limit, which we here determine by neutron diffraction, and their unique interaction characteristics, which are essential for the biogenesis of photosynthetic membranes.
title: Circulating Ouabain Modulates Expression of Claudins in Rat Intestine and Cerebral Blood Vessels
Creators: name: Markov, Alexander G.
name: Fedorova, Arina A.
name: Kravtsova, Violetta V.
name: Bikmurzina, Anastasia E.
name: Okorokova, Larisa S.
name: Matchkov, Vladimir V.
name: Cornelius, Valeria
name: Amasheh, Salah
name: Krivoi, Igor I.
Publisher: name: Freie Universität Berlin
Year: 2020
Subjects: subject: Na,K-ATPase
subject: circulating ouabain
subject: claudins
subject: intestine
subject: brain blood vessels
subject: IPEC-J2 cells
classificationCode: 630
subject: Landwirtschaft und verwandte Bereiche
classificationCode: 616
subject: Krankheiten

description: The ability of exogenous low ouabain concentrations to affect claudin expression and therefore epithelial barrier properties was demonstrated previously in cultured cell studies. We hypothesized that chronic elevation of circulating ouabain in vivo can affect the expression of claudins and tight junction permeability in different tissues. We tested this hypothesis in rats intraperitoneally injected with ouabain (1 μg/kg) for 4 days. Rat jejunum, colon and brain frontal lobes, which are variable in the expressed claudins and tight junction permeability, were examined. Moreover, the porcine jejunum cell line IPEC-J2 was studied. In IPEC-J2-cells, ouabain (10 nM, 19 days of incubation) stimulated epithelial barrier formation, increased transepithelial resistance and the level of cSrc-kinase activation by phosphorylation, accompanied with an increased expression of claudin-1, -5 and down-regulation of claudin-12; the expression of claudin-3, -4, -8 and tricellulin was not changed. In the jejunum, chronic ouabain increased the expression of claudin-1, -3 and -5 without an effect on claudin-2 and -4 expression. In the colon, only down-regulation of claudin-3 was observed. Chronic ouabain protected the intestine transepithelial resistance against functional injury induced by lipopolysaccharide treatment or by modeled acute microgravity; this regulation was most pronounced in the jejunum. Claudin-1 was also up-regulated in cerebral blood vessels. This was associated with reduction of claudin-3 expression while the expression of claudin-5 and occludin was not affected. Altogether, our results confirm that circulating ouabain can functionally and tissue-specifically affect barrier properties of epithelial and endothelial tissues via Na,K-ATPase-mediated modulation of claudins expression.
title: Hydrothermal Activation of Porous Nitrogen-Doped Carbon Materials for Electrochemical Capacitors and Sodium-Ion Batteries
Creators: name: Fedoseeva, Yuliya V.
name: Lobiak, Egor V.
name: Shlyakhova, Elena V.
name: Kovalenko, Konstantin A.
name: Kuznetsova, Viktoriia R.
name: Vorfolomeeva, Anna A.
name: Grebenkina, Mariya A.
name: Nishchakova, Alina D.
name: Makarova, Anna A.
name: Bulusheva, Lyubov G.
name: Okotrub, Alexander V.
Publisher: name: Freie Universität Berlin
Year: 2020
Subjects: subject: porous nitrogen-doped carbon
subject: hydrothermal treatment
subject: XPS
subject: NEXAFS
subject: electrochemical double-layer capacitors
subject: sodium-ion batteries
classificationCode: 541
subject: Physikalische Chemie

description: Highly porous nitrogen-doped carbon nanomaterials have distinct advantages in energy storage and conversion technologies. In the present work, hydrothermal treatments in water or ammonia solution were used for modification of mesoporous nitrogen-doped graphitic carbon, synthesized by deposition of acetonitrile vapors on the pyrolysis products of calcium tartrate. Morphology, composition, and textural characteristics of the original and activated materials were studied by transmission electron microscopy, X-ray photoelectron spectroscopy, near-edge X-ray absorption fine structure spectroscopy, infrared spectroscopy, and nitrogen gas adsorption method. Both treatments resulted in a slight increase in specific surface area and volume of micropores and small mesopores due to the etching of carbon surface. Compared to the solely aqueous medium, activation with ammonia led to stronger destruction of the graphitic shells, the formation of larger micropores (1.4 nm vs. 0.6 nm), a higher concentration of carbonyl groups, and the addition of nitrogen-containing groups. The tests of nitrogen-doped carbon materials as electrodes in 1M H2SO4 electrolyte and sodium-ion batteries showed improvement of electrochemical performance after hydrothermal treatments especially when ammonia was used. The activation method developed in this work is hopeful to open up a new route of designing porous nitrogen-doped carbon materials for electrochemical applications.
title: The first law of general quantum resource theories
Creators: name: Sparaciari, Carlo
name: Rio, Lídia Del
name: Scandolo, Carlo Maria
name: Faist, Philippe
name: Oppenheim, Jonathan
Publisher: name: Freie Universität Berlin
Year: 2020
Subjects: subject: quantum resource theories
subject: first law of thermodynamics
classificationCode: 539
subject: Moderne Physik

description: We extend the tools of quantum resource theories to scenarios in which multiple quantities (or resources) are present, and their interplay governs the evolution of physical systems. We derive conditions for the interconversion of these resources, which generalise the first law of thermodynamics. We study reversibility conditions for multi-resource theories, and find that the relative entropy distances from the invariant sets of the theory play a fundamental role in the quantification of the resources. The first law for general multi-resource theories is a single relation which links the change in the properties of the system during a state transformation and the weighted sum of the resources exchanged. In fact, this law can be seen as relating the change in the relative entropy from different sets of states. In contrast to typical single-resource theories, the notion of free states and invariant sets of states become distinct in light of multiple constraints. Additionally, generalisations of the Helmholtz free energy, and of adiabatic and isothermal transformations, emerge. We thus have a set of laws for general quantum resource theories, which generalise the laws of thermodynamics. We first test this approach on thermodynamics with multiple conservation laws, and then apply it to the theory of local operations under energetic restrictions.
Supplementary document for Strong Purcell Effect in Deep Subwavelength Coaxial Cavity with GeSn Active Medium - 5320325.pdf
Creators: name: Ren, Tianhua
name: Dong, Yiyao
name: Xu, Shengqiang
name: Gong, Xiao
Publisher: name: Optica Publishing Group
Year: 2021
Subjects: subject: 40607 Surface Processes
subject: FOS: Earth and related environmental sciences

description: Calculation method, higher-order SPP modes, and non-local optical response
sj-docx-1-jpc-10.1177_21501327211054987 – Supplemental material for Anxiety, Depression, and Common Chronic Diseases, and Their Association With Social Determinants in Saudi Primary Care
Creators: name: Baghdadi, Leena R.
name: Alhassan, Mohammed Khalid
name: Alotaibi, Fawaz Hindi
name: AlSelaim, Khalid Badr
name: Alzahrani, Abdulrahman Abdulkhaliq
name: AlMusaeed, Faisal Fahad
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 111708 Health and Community Services
subject: FOS: Health sciences
subject: 111799 Public Health and Health Services not elsewhere classified

description: Supplemental material, sj-docx-1-jpc-10.1177_21501327211054987 for Anxiety, Depression, and Common Chronic Diseases, and Their Association With Social Determinants in Saudi Primary Care by Leena R. Baghdadi, Mohammed Khalid Alhassan, Fawaz Hindi Alotaibi, Khalid Badr AlSelaim, Abdulrahman Abdulkhaliq Alzahrani and Faisal Fahad AlMusaeed in Journal of Primary Care & Community Health
title: Personality Development in Emerging Adulthood—How the Perception of Life Events and Mindset Affect Personality Trait Change
Creators: name: Vries, Jantje Hinrika De
name: Spengler, Maik
name: Frintrup, Andreas
name: Mussel, Patrick
Publisher: name: Freie Universität Berlin
Year: 2021
Subjects: subject: personality development
subject: life events
subject: big five
subject: mindset
subject: emerging adulthood
classificationCode: 150
subject: Psychologie

description: Personality changes throughout the life course and change is often caused by environmental influences, such as critical life events. In the present study, we investigate personality trait development in emerging adulthood as a result of experiencing two major life events: graduating from school and moving away from home. Thereby, we examined the occurrence of the two life events per se and the subjective perception of the critical life event in terms of valence. In addition, we postulate a moderation effect of the construct of mindset, which emphasizes that beliefs over the malleability of global attributes can be seen as predictors of resilience to challenges. This suggests that mindset acts as a buffer for these two distinct events. In a large longitudinal sample of 1,243 people entering adulthood, we applied latent structural equation modeling to assess mean-level changes in the Big Five, the influence of life events per se, the subjective perception of life events, and a moderating role of mindset. In line with maturity processes, results showed significant mean-level changes in all Big Five traits. While no changes in the Big Five dimensions were noted when the mere occurrence of an event is assessed, results indicated a greater increase in extraversion and diminished increase in emotional stability when we accounted for the individual's (positive/negative) perception of the critical life event. In case of extraversion, this also holds true for the moderator mindset. Our findings contribute valuable insights into the relevance of subjective appraisals to life events and the importance of underlying processes to these events.
Areas of high risk for mammalian biodiversity and Nature's Contributions to People under global warming
Creators: name: Marta Cimatti
name: Andrea Sacchi
name: Moreno Di Marco
Publisher: name: Zenodo
Year: 2023

description: R, GRASS scripts and outputs to reproduce step by step the analysis of the article entitled "Areas of high risk for mammalian biodiversity and Nature’s Contributions to People under global warming".

All input data used in these analyses derive from published sources cited in the methods section.
Areas of high risk for mammalian biodiversity and Nature's Contributions to People under global warming
Creators: name: Cimatti, Marta
name: Sacchi, Andrea
name: Di Marco, Moreno
Publisher: name: Zenodo
Year: 2024

description: R, GRASS scripts and outputs to reproduce step by step the analysis of the article entitled "Areas of high risk for mammalian biodiversity and Nature’s Contributions to People under global warming".

All input data used in these analyses derive from published sources cited in the methods section.
Maris Jesse: Tervisepoliitika eesmärgid peavad olema pikaajalised ja tegevus nende saavutamiseks järjepidev
Creators: name: Nahkur, Siim
Publisher: name: Eesti Arst
Year: 2011

description: Eesti Arst 2011; 90(5):210–212
description: Eesti Arst, Mai 2011
Areas of high risk for mammalian biodiversity and Nature's Contributions to People under global warming
Creators: name: Cimatti, Marta
name: Sacchi, Andrea
name: Di Marco, Moreno
Publisher: name: Zenodo
Year: 2025

description: R, GRASS scripts and outputs to reproduce step by step the analysis of the article entitled "Areas of high risk for mammalian biodiversity and Nature’s Contributions to People under global warming".

All input data used in these analyses derive from published sources cited in the methods section.Preprint available at: https://www.biorxiv.org/content/10.1101/2024.08.30.610332v1
title: Effect of dielectric discontinuity on a spherical polyelectrolyte brush
Creators: name: Tergolina, Vinicius B.
name: Santos, Alexandre P. Dos
Publisher: name: Freie Universität Berlin
Year: 2017
Subjects: subject: Polyelectrolytes
subject: Dielectrics
subject: Nanoparticles
subject: Molecular dynamics
subject: Electrostatics
classificationCode: 530
subject: Physik

description: In this paper we perform molecular dynamics simulations of a spherical polyelectrolyte brush and counterions in a salt-free medium. The dielectric discontinuity on the grafted nanoparticle surface is taken into account by the method of image charges. Properties of the polyelectrolyte brush are obtained for different parameters, including valency of the counterions, radius of the nanoparticle, and the brush total charge. The monovalent counterions density profiles are obtained and compared with a simple mean-field theoretical approach. The theory allows us to obtain osmotic properties of the system.
title: Antinociceptive Efficacy of the µ-Opioid/Nociceptin Peptide-Based Hybrid KGNOP1 in Inflammatory Pain without Rewarding Effects in Mice: An Experimental Assessment and Molecular Docking
Creators: name: Dumitrascuta, Maria
name: Bermudez, Marcel
name: Trovato, Olga
name: Neve, Jolien De
name: Ballet, Steven
name: Wolber, Gerhard
name: Spetea, Mariana
Publisher: name: Freie Universität Berlin
Year: 2021
Subjects: subject: µ-opioid receptor
subject: nociceptin receptor
subject: multitarget ligands
subject: inflammatory pain
subject: side effects
subject: reward
subject: molecular docking
classificationCode: 615
subject: Pharmakologie, Therapeutik

description: Opioids are the most effective analgesics, with most clinically available opioids being agonists to the µ-opioid receptor (MOR). The MOR is also responsible for their unwanted effects, including reward and opioid misuse leading to the current public health crisis. The imperative need for safer, non-addictive pain therapies drives the search for novel leads and new treatment strategies. In this study, the recently discovered MOR/nociceptin (NOP) receptor peptide hybrid KGNOP1 (H-Dmt-D-Arg-Aba-β-Ala-Arg-Tyr-Tyr-Arg-Ile-Lys-NH2) was evaluated following subcutaneous administration in mouse models of acute (formalin test) and chronic inflammatory pain (Complete Freund’s adjuvant-induced paw hyperalgesia), liabilities of spontaneous locomotion, conditioned place preference, and the withdrawal syndrome. KGNOP1 demonstrated dose-dependent antinociceptive effects in the formalin test, and efficacy in attenuating thermal hyperalgesia with prolonged duration of action. Antinociceptive effects of KGNOP1 were reversed by naltrexone and SB-612111, indicating the involvement of both MOR and NOP receptor agonism. In comparison with morphine, KGNOP1 was more potent and effective in mouse models of inflammatory pain. Unlike morphine, KGNOP1 displayed reduced detrimental liabilities, as no locomotor impairment nor rewarding and withdrawal effects were observed. Docking of KGNOP1 to the MOR and NOP receptors and subsequent 3D interaction pattern analyses provided valuable insights into its binding mode. The mixed MOR/NOP receptor peptide KGNOP1 holds promise in the effort to develop new analgesics for the treatment of various pain states with fewer MOR-mediated side effects, particularly abuse and dependence liabilities.
Additional file 8 of Systematic identification of CAZymes and transcription factors in the hypercellulolytic fungus Penicillium funiculosum NCIM1228 involved in lignocellulosic biomass degradation
Creators: name: Pasari, Nandita
name: Gupta, Mayank
name: Sinha, Tulika
name: Ogunmolu, Funso Emmanuel
name: Yazdani, Syed Shams
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 8: Table S1. P. funiculosum NCIM1228 TF homologs. Table S2. Summary of read data, mapping and reference-based assembly obtained for each growth condition of P. funiculosum. Table S3. Significant differential expression of TFs. Table S4. Expression levels of TFs through RT-qPCR and Illumina RNA-Seq. Table S5. Comparative analysis of genome features of filamentous fungi. Table S6. Primers for RT-PCR. Figure S1. Domain architecture of P. funiculosum NCIM1228 CAZy family proteins. Figure S2. Expression analysis along with the domain architecture of P. funiculosum NCIM1228 TFs. Figure S3. Cellulolytic activities and supernatant protein estimation of P. funiculosum NCIM1228. Figure S4. Correlation of RNA-Seq Data obtained from the biological replicates. (A) Graphs representing the Pearson correlation between biological replicates of each sample. A high Pearson correlation was obtained demonstrating the reliability of RNA-seq analysis (R ≥ 0.95). (B) Boxplot of all normalized samples showing that all samples and conditions are comparable. Figure S5. Principal component analysis (PCA) of gene expression levels in A) CAZymes and B) TFs in replicates of the five carbon substrates—Glucose, Avicel, Wheat bran, Avicel + wheat bran, and biomass. Figure S6. Expression analysis of TF coding genes in response to crystalline carbon substrate Avicel using RT-qPCR. Figure S7. Alignment of transcription factors with the known homologs.
sj-docx-1-whe-10.1177_17455065211063300 – Supplemental material for COVID-19 in pregnancy by race and ethnicity: Implications for development of a vaccination strategy
Creators: name: Pressman, Alice
name: Lockhart, Stephen H
name: Wilcox, Joseph
name: Smits, Kelly
name: Etzell, Joan
name: Albeiroti, Sami
name: DeRee, Michele
name: Flaherty, Christine
name: Genolaga, Sheila
name: Goodreau, Michelle
name: Refai, Farah
name: Restall, Alexandra
name: Lanner-Cusin, Katarina
name: Azar, Kristen MJ
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 111402 Obstetrics and Gynaecology
subject: FOS: Clinical medicine

description: Supplemental material, sj-docx-1-whe-10.1177_17455065211063300 for COVID-19 in pregnancy by race and ethnicity: Implications for development of a vaccination strategy by Alice Pressman, Stephen H Lockhart, Joseph Wilcox, Kelly Smits, Joan Etzell, Sami Albeiroti, Michele DeRee, Christine Flaherty, Sheila Genolaga, Michelle Goodreau, Farah Refai, Alexandra Restall, Katarina Lanner-Cusin and Kristen MJ Azar in Women’s Health
Hotspots of risk for mammal biodiversity and Nature's Contributions to People under global warming
Creators: name: Cimatti, Marta
name: Sacchi, Andrea
name: Di Marco, Moreno
Publisher: name: Zenodo
Year: 2023

description: R, GRASS scripts and outputs to reproduce step by step the analysis of the article entitled "Hotspots of risk for mammal biodiversity and Nature’s Contributions to People under global warming". All input data used in these analyses derive from published sources cited in the methods section.
sj-pdf-1-esp-10.1177_09589287211056171 – Supplemental Material for The political consequences of housing (un)affordability
Creators: name: Marx, Ive
name: Nolan, Brian
name: Ansell, Ben
name: Cansunar, Asli
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 160607 International Relations
subject: FOS: Political science
subject: 160512 Social Policy

description: Supplemental Material, sj-pdf-1-esp-10.1177_09589287211056171 for The political consequences of housing (un)affordability by Ben Ansell and Asli Cansunar in Journal of European Social Policy
Prooviuuring alkoholi liigtarvitamise varajase avastamise ja nõustamise metoodika hindamiseks Eesti perearstisüsteemis
Creators: name: Saame, Iisi
name: Gluškova, Natalja
name: Viilmann, Karl
name: Kalda, Ruth
Publisher: name: Eesti Arst
Year: 2011
Subjects: ohustav ja kahjustav alkoholitarvitamine, AUDITi küsimustik, nõustamine, peremeditsiin

description: Taust ja eesmärk. Alkoholi tarvitamisest tingitud tervisehäirete ennetamisel on oluline alkoholi liigtarvitamise varajane avastamine ja patsientide nõustamine. Uuringu eesmärgiks oli hinnata alkoholi liigtarvitamise varajase avastamise ja nõustamise iseärasusi ja sobilikkust Eesti perearstisüsteemis, samuti vastavate koolituste ning juhend- ja infomaterjalide vajalikkust.
 Meetodid. 265 patsiendist uuritavat vanuses 18–64 aastat vastasid Eesti kuues perearstikeskuses AUDITi küsimustele. Lähtudes testi tulemusest, informeeriti või nõustati patsiente. Osalenud 8 perearsti ja 7 pereõe hinnangud teostatud tegevuste kohta koguti küsimustiku ning struktureeritud rühmatöö ja arutelu abil. Andmete analüüsil kasutati kirjeldavat statistikat ja kvalitatiivset tekstianalüüsi.
 Tulemused. 23%-l uuritud patsientidest leiti ohustav või kahjustav alkoholitarvitamine, 93% uuritutest vastas meelsasti kõigile AUDITi küsimustele. 88%-l juhtudest kulus testimisele ja nõustamisele aega mitte enam kui 20 minutit. Tervishoiutöötajate arvates oli patsientide testimine kergem kui nende nõustamine.
 Järeldused. Alkoholi liigtarvitamise varane testimine ja nõustamine on sobilikud perearstisüsteemis kasutamiseks. Peremeditsiini spetsiifikaga arvestavad täienduskoolitused on vajalikud õdede ja arstide nõustamisoskuse suurendamiseks.


 Eesti Arst 2011; 90(5): 216–224
description: Eesti Arst, Mai 2011
sj-docx-1-tag-10.1177_17562848211059954 – Supplemental material for Tumour necrosis factor inhibitors in inflammatory bowel disease: the story continues
Creators: name: Peyrin-Biroulet, Laurent
name: Sandborn, William J.
name: Panaccione, Remo
name: Domènech, Eugeni
name: Pouillon, Lieven
name: Siegmund, Britta
name: Danese, Silvio
name: Ghosh, Subrata
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 111199 Nutrition and Dietetics not elsewhere classified
subject: FOS: Health sciences
subject: 111299 Oncology and Carcinogenesis not elsewhere classified
subject: FOS: Clinical medicine
subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified

description: Supplemental material, sj-docx-1-tag-10.1177_17562848211059954 for Tumour necrosis factor inhibitors in inflammatory bowel disease: the story continues by Laurent Peyrin-Biroulet, William J. Sandborn, Remo Panaccione, Eugeni Domènech, Lieven Pouillon, Britta Siegmund, Silvio Danese and Subrata Ghosh in Therapeutic Advances in Gastroenterology
Additional file 1 of hadge: a comprehensive pipeline for donor deconvolution in single-cell studies
Creators: name: Curion, Fabiola
name: Wu, Xichen
name: Heumos, Lukas
name: André, Mylene Mariana Gonzales
name: Halle, Lennard
name: Ozols, Matiss
name: Grant-Peters, Melissa
name: Rich-Griffin, Charlotte
name: Yeung, Hing-Yuen
name: Dendrou, Calliope A.
name: Schiller, Herbert B.
name: Theis, Fabian J.
Publisher: name: figshare
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Supplementary figures.
Additional file 1 of Association between a mediterranean lifestyle and Type 2 diabetes incidence: a prospective UK biobank study
Creators: name: Maroto-Rodriguez, Javier
name: Ortolá, Rosario
name: Carballo-Casla, Adrián
name: Iriarte-Campo, Víctor
name: Salinero-Fort, Miguel Ángel
name: Rodríguez-Artalejo, Fernando
name: Sotos-Prieto, Mercedes
Publisher: name: figshare
Year: 2023
Subjects: subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Science Policy

description: Supplementary Material 1
sj-pdf-1-hpq-10.1177_13591053211061412 – Supplemental material for How beliefs about weight malleability and risk perceptions for obesity influence parents’ information seeking and feeding
Creators: name: Hagerman, Charlotte J
name: Ferrer, Rebecca A
name: Persky, Susan
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: FOS: Clinical medicine
subject: 111799 Public Health and Health Services not elsewhere classified
subject: FOS: Health sciences

description: Supplemental material, sj-pdf-1-hpq-10.1177_13591053211061412 for How beliefs about weight malleability and risk perceptions for obesity influence parents’ information seeking and feeding by Charlotte J Hagerman, Rebecca A Ferrer and Susan Persky in Journal of Health Psychology
Additional file 3 of hadge: a comprehensive pipeline for donor deconvolution in single-cell studies
Creators: name: Curion, Fabiola
name: Wu, Xichen
name: Heumos, Lukas
name: André, Mylene Mariana Gonzales
name: Halle, Lennard
name: Ozols, Matiss
name: Grant-Peters, Melissa
name: Rich-Griffin, Charlotte
name: Yeung, Hing-Yuen
name: Dendrou, Calliope A.
name: Schiller, Herbert B.
name: Theis, Fabian J.
Publisher: name: figshare
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3: Supplementary tables.