cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Microbial transmission from mother to child: improving infant intestinal microbiota development by identifying the obstacles
Creators: name: Daele, Emmy Van
name: Knol, Jan
name: Belzer, Clara
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified

description: Industrialisation has introduced several lifestyle changes and medical advancements but their impact on intestinal microbiota acquisition is often overlooked. Even though these consequential changes in the microbiota could contribute to the disease burden that accompanies industrialisation, such as obesity and atopic disease. A healthy intestinal microbiota is acquired early in life but its exact origin is not fully elucidated. The maternal microbiota is a likely source because the infant and mother intestinal microbiota share identical strains. Successfully transmitting microbes from mother to child requires microbes in the maternal donor, contact between the maternal source and the infant, and an acquiring infant recipient. Transmission can be altered by changes to any of those three transmission determinants: (1) maternal microbiota sources are shaped by the mother’s genotype, diet, health status and perturbing antimicrobial exposure; (2) maternal contact is reduced through C-section and formula feeding and (3) engraftment in the infant recipient is determined by host habitat filtering, the established microbes and antibiotic disruptions. This review gives an overview of the possible maternal transmission routes, the disruptions thereof, and the missing links that should be addressed in future research to investigate the maternal transmissions that are crucial for obtaining a healthy infant microbiota.
Why is a noble metal catalytically active? The role of the O-Ag interaction in the function of silver as an oxidation catalyst
Creators: name: Li, Wei-Xue
name: Stampfl, Catherine
name: Scheffler, Matthias
Publisher: name: arXiv
Year: 2003
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Extensive density-functional theory calculations, and taking into account temperature and pressure, affords a comprehensive picture of the behavior and interaction of oxygen and Ag(111), and provides valuable insight into the function of silver as an oxidation catalyst. The obtained phase-diagram reveals the most stable species present in a given environment and thus identifies (and excludes) possibly active oxygen species. In particular, for the conditions of ethylene epoxidation, a thin oxide-like structure is most stable, suggesting that such atomic O species are actuating the catalysis, in contrast to hitherto proposed molecular-like species.
description: 4 pages including 3 figures, Related publications can be found at http://www.fhi-berlin.mpg.de/th/paper.html
Bathypallenopsis richeri
Creators: name: Bamber, Roger N.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Pycnogonida
Pantopoda
Pallenopsidae
Bathypallenopsis
Bathypallenopsis richeri

description: Bathypallenopsis richeri (Bamber, 2000)
 Pallenopsis (Bathypallenopsis) richeri Bamber, 2000: 613- 615, fig. 1; 2011: 64.
MATERIAL EXAMINED. — 1 ♂, MNHN-IU-2008-20516, Stn. CP3762, Vicinity of the Feni Islands, Papua New Guinea, 03°57’S, 153°49’E, 995-1050 m, 14.XI.2010, coll. Samadi & Corbari.
REMARKS
A Melanesian endemic known previously from Fiji, Vanuatu and the Solomon Islands (see Bamber, 2000: 2011), at depths between 815 and 1191 m.
description: Published as part of Bamber, Roger N., 2013, Deep-water Pycnogonida from recent cruises to Papua New Guinea and Melanesia, with an appendix of new records from Polynesia and descriptions of five new species, pp. 195-214 in Zoosystema 35 (2) on page 206, DOI: 10.5252/z2013n2a5, http://zenodo.org/record/5160321
ALMA resolves the hourglass magnetic field in G31.41+0.31
Creators: name: Beltrán, M. T.
name: Padovani, M.
name: Girart, J. M.
name: Galli, D.
name: Cesaroni, R.
name: Paladino, R.
name: Anglada, G.
name: Estalella, R.
name: Osorio, M.
name: Rao, R.
name: Sánchez-Monge, Á.
name: Zhang, Q.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Context. Submillimeter Array (SMA) 870 micron polarization observations of the hot molecular core G31.41+0.31 revealed one of the clearest examples up to date of an hourglass-shaped magnetic field morphology in a high-mass star-forming region. Aims. To better establish the role that the magnetic field plays in the collapse of G31.41+0.31, we carried out Atacama Large Millimeter/submillimeter Array (ALMA) observations of the polarized dust continuum emission at 1.3 mm with an angular resolution four times higher than that of the previous (sub)millimeter observations to achieve an unprecedented image of the magnetic field morphology. Methods. We used ALMA to perform full polarization observations at 233 GHz (Band 6). The resulting synthesized beam is 0.28"x0"20 which, at the distance of the source, corresponds to a spatial resolution of ~875 au. Results. The observations resolve the structure of the magnetic field in G31.41+0.31 and allow us to study the field in detail. The polarized emission in the Main core of G31.41+0.41is successfully fit with a semi-analytical magnetostatic model of a toroid supported by magnetic fields. The best fit model suggests that the magnetic field is well represented by a poloidal field with a possible contribution of a toroidal component of ~10% of the poloidal component, oriented southeast to northwest at ~ -44 deg and with an inclination of ~-45 degr. The magnetic field is oriented perpendicular to the northeast to southwest velocity gradient detected in this core on scales from 1E3-1E4 au. This supports the hypothesis that the velocity gradient is due to rotation and suggests that such a rotation has little effect on the magnetic field. The strength of the magnetic field estimated in the central region of the core with the Davis-Chandrasekhar-Fermi method is ~8-13 mG and implies that the mass-to-flux ratio in this region is slightly supercritical ...
description: 13 pages, 11 figures. Accepted for publication in A&A
A new multidimensional AMR Hydro+Gravity Cosmological code
Creators: name: Quilis, Vicent
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: A new cosmological multidimensional hydrodynamic and N-body code based on an Adaptive Mesh Refinement scheme is described and tested. The hydro part is based on modern high-resolution shock-capturing techniques, whereas N-body approach is based on the Particle Mesh method. The code has been specifically designed for cosmological applications. Tests including shocks, strong gradients, and gravity have been considered. A cosmological test based on Santa Barbara cluster is also presented. The usefulness of the code is discussed. In particular, this powerful tool is expected to be appropriate to describe the evolution of the hot gas component located inside asymmetric cosmological structures.
description: 15 latex pages with mn.sty, 8 eps figures; accepted for publication in MNRAS
Sequencing data of cell-free DNA fragments in living-related liver transplantation for inborn errors of metabolism
Creators: name: 海锐, 伍
Publisher: name: CNGB
Year: 2019
Subjects: Genome sequencing and assembly
Multiisolate

description: Graft derived cell-free DNA was recently reported as a non-invasive biomarker to detect graft damage or rejection after liver transplantation. There are a number of methods for quantification of Gcf-DNA, including quantitative-PCR, digital droplet PCR and massively parallel sequencing (next generation sequencing). Here we present the NGS data of cell-free DNA in the plasma of patients with inborn errors of metabolism who have underwent living-related liver transplantation.
Additional file 4 of Characterization and use of the ECV304 autoantigenic citrullinome to understand anti-citrullinated protein/peptide autoantibodies in rheumatoid arthritis
Creators: name: de França, Natalia Regine
name: Ménard, Henri André
name: Lora, Maximilien
name: Zhou, Zhijie
name: Rauch, Joyce
name: Hitchon, Carol
name: Andrade, Luís Eduardo Coelho
name: Colmegna, Inés
Publisher: name: figshare
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer

description: Additional file 4: Table S2. Authentication of the ECV304 (ATCC CRL-1998) and T24 (ATC HTB-4) cell lines by Short Tandem Repeated DNA profiling at ATCC.
Forecasting Corn Yield with Machine Learning Ensembles
Creators: name: Shahhosseini, Mohsen
name: Hu, Guiping
name: Archontoulis, Sotirios V.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Applications (stat.AP)
subject: Machine Learning (cs.LG)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: The emerge of new technologies to synthesize and analyze big data with high-performance computing, has increased our capacity to more accurately predict crop yields. Recent research has shown that Machine learning (ML) can provide reasonable predictions, faster, and with higher flexibility compared to simulation crop modeling. The earlier the prediction during the growing season the better, but this has not been thoroughly investigated as previous studies considered all data available to predict yields. This paper provides a machine learning based framework to forecast corn yields in three US Corn Belt states (Illinois, Indiana, and Iowa) considering complete and partial in-season weather knowledge. Several ensemble models are designed using blocked sequential procedure to generate out-of-bag predictions. The forecasts are made in county-level scale and aggregated for agricultural district, and state level scales. Results show that ensemble models based on weighted average of the base learners outperform individual models. Specifically, the proposed ensemble model could achieve best prediction accuracy (RRMSE of 7.8%) and least mean bias error (-6.06 bu/acre) compared to other developed models. Comparing our proposed model forecasts with the literature demonstrates the superiority of forecasts made by our proposed ensemble model. Results from the scenario of having partial in-season weather knowledge reveal that decent yield forecasts can be made as early as June 1st. To find the marginal effect of each input feature on the forecasts made by the proposed ensemble model, a methodology is suggested that is the basis for finding feature importance for the ensemble model. The findings suggest that weather features corresponding to weather in weeks 18-24 (May 1st to June 1st) are the most important input features.
USER PERCEPTIONS OF BENEFITS FROM WATER SUPPLIED BY CUMING COUNTY RURAL WATER DISTRICT #1
Creators: name: Janovec, Terese M.
name: Gessaman, Paul H.
name: Janovec, Terese M.
name: Gessaman, Paul H.
Publisher: name: Unknown
Year: 1982
Subjects: Community/Rural/Urban Development
Resource /Energy Economics and Policy

description: We all rely on and need water for life, health, work, and play. In urban areas, good water supplies are a generally accepted part of the urban life style. In rural areas, water supplies may be more uncertain, though highly important to the well-being of plants, animals, and humans. Farmers need reliable supplies of good quality water for a number of agricultural uses in addition to the water needed for their households. Unfortunately, many rural residents are located in areas where water availability and/or water quality is such that private water systems do not supply the amounts and quality of water needed for good living conditions. Rural water systems are complex and expens1ve mechanisms intended to provide reliable supplies of good quality water to residents of rural areas. A rural water system usually consists of a water source, pumps, pipelines, elevated or underground storage, and ancillary facilities and equipment. It is intended to deliver good quality water to farms or nonfarm homes or businesses scattered across the countryside. Customers served by a water system have a wide range of water needs. Most need water for domestic and household use. Some may have livestock feeding operations that require large quantities of water for consumption by poultry, cattle, or SW1ne, plus water for cooling, and for the cleaning of equipment, and facilities. Even if they do not have large numbers of livestock, farms may use substantial amounts of water for the application of herbicides and insecticides and the maintenance and cleaning of buildings, machinery and equipment. When rural water systems provide adequate supplies of good quality water to rural residents, both the quality of life and the economic base of the area are improved.
Planewave diffraction at the periodically corrugated boundary of vacuum and a negative phase-velocity material
Creators: name: Depine, R. A.
name: Lakhtakia, A.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: Considering the diffraction of a plane wave by a periodically corrugated half-space, we show that the transformation of the refracting medium from positive/negative phase-velocity to negative/positive phase-velocity type has an influence on the diffraction efficiencies. This effect increases with increasing corrugation depth, owing to the presence of evanescent waves in the troughs of the corrugated interface.
description: Submitted for publication in Phys. Rev. E
RECENT AND PROJECTED FINANCIAL CONDITIONS IN NEBRASKA'S FARMING SECTOR
Creators: name: Gessaman, Paul H.
name: Morris, Gayle A.
name: Gessaman, Paul H.
name: Morris, Gayle A.
Publisher: name: Unknown
Year: 1983
Subjects: Financial Economics

description: Annual aggregate (sector) financial statements for Nebraska's farming sector were compiled for the 1960-80 period. An existing econometric model was updated to reflect sector financial relationships for the 1960-79 period. It was used to project sector financial statements for 1981-83 under alternate sets of assumptions using financial statement entries for 1980 as initial values. Comparisons of 1975 and 1980 sector financial statements with those projected for 1982 and 1983 provided numerous measures of the deteriorating financial position of the farming sector. Debt increases 1975-80 resulted in a declining sector equity ratio despite large increases in the current dollar value of assets during the period. Equity ratios were projected to decline further in 1982 and 1983 as financial assets were depleted and real estate values declined. Sector net income from farming was projected to continue its 1975-80 decline and be negative in 1982 and 1983. Debt extensions were an increasingly important source of sector liquidity 1975-80 and that trend was projected to continue in 1982-83. Financial stresses in the farming sector were expected to result in rapid modification of management approaches and actual revenue shortfalls and debt levels for 1982 and 1983 are expected to be less than those projected, but undoubtedly will be highly unfavorable. Major insights drawn from the 21-year sequence of sector financial statements included : (1) Equity liquidation through increased borrowing became a major source of sector liquidity during the period. (2) Financial flows through the sector increased greatly during the period of 21 years, but the purchasing power of sector net income was less at the end of the period than it had been during the early 1960's. (3) The ratio of debt repayments to net farm income was stable during the 1970's and increased three-fold during the 1980's as the sector's debt load increased and debt rollovers became more prevalent. (4) Proprietors' withdrawals for family living, taxes, and nonfarm investments exceeded sector net income in more than one half of the years and the resulting net disinvestment in the farming sector totaled to an estimated $2.9 billion in the 21 years.
Tracking tissue-of-origin in cancer patients
Creators: name: Li, Fuqiang
Publisher: name: CNGB
Year: 2020
Subjects: Raw sequence reads
Genome sequencing
Multiisolate
Medical

description: Somatic mosaicism exists among tissues widely and would mark circulating cell-free DNA (cfDNA) as DNA fragments released by lytic cells from distinct tissues into the blood. By investigating the alignment pattern of sequencing reads from whole genome sequencing on genomic DNA of different tissues, we found the reads distribution forms tissue-specific patterns on some regions, as a result of somatic mosaicism. We then utilized this indication to construct a tissue-of-origin mapping model and evaluated the predictive performance on WGS data from tissue and cfDNA. In total, 1,545 tissue samples involving 13 cancer types were included, and the performance of identification of tissue-of-origin achieved specificity of 82% and sensibility of 80%. Furthermore, a total of 30 cfDNA samples involving lung cancer, liver cancer, and healthy control were analyzed to indicate their nidus’ tissue-of-origin with specificity and sensibility both at 87%. Our results show that reads distribution of whole genome sequencing could be used to identify the tissue-of-origin of cfDNA samples with high accuracy, suggesting the potential application of our model on early tumor detection and diagnosis.
PEG-400 assisted Kröhnke synthesis of 2-(2-hydroxyphenyl)-4-arylpyridines annulated by C5-C6 cycles with substituted benzylidene group
Creators: name: Batalin, Sergey
name: Golikova, Margarita
name: Khrustaleva, Alexandra
name: Pchelintseva, Nina
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Computational Biology

description: A simple and efficient method has been developed for the synthesis 2-(2-hydroxyphenyl)-4-arylpyridines annulated by C5-C6 cycles with substituted benzylidene group is achieved by multi-component Kröhnke-type reaction with moderate to good yields in PEG-400. The classical version was considered using cross-conjugated dienones as substrates by counter synthesis.
Time lag in cosmic-ray modulation and global properties of the Solar Cycle
Creators: name: Bertucci, Bruna
name: Fiandrini, Emanuele
name: Khiali, Behrouz
name: Tomassetti, Nicola
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Space Physics (physics.space-ph)
subject: FOS: Physical sciences

description: When entering the heliosphere, Galactic cosmic rays (GCRs) are influenced by magnetic turbulence and Solar wind disturbances, which cause the so-called "solar modulation" effect. Understanding the time-dependent relationship between the Sun's variability and GCR flux modulation is essential for the investigation of the GCR transport processes in the heliosphere, as well as for the establishment of predictive models of GCR radiation in the interplanetary space. The known anti-correlation between GCR flux and sunspot number appears to be delayed by several months, but the origin of such a time lag is unclear. In this work, we are perform the first global characterization of the time lag evolution over the solar cycles and its energy dependence. We made use of a large collection of time-resolved data, both from space missions and ground based observatories. Since the long-term variation of the GCR flux originates by a combination of several physics processes, the investigation presented here may reveal important aspects of the GCR transport in the heliospheric plasma.
description: 8 pages, 3 figures, Proceedings of the 36th International Cosmic Ray Conference
Quantum Trajectories and Quantum Measurement Theory
Creators: name: Wiseman, H. M.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Beyond their use as numerical tools, quantum trajectories can be ascribed a degree of reality in terms of quantum measurement theory. In fact, they arise naturally from considering continuous observation of a damped quantum system. A particularly useful form of quantum trajectories is as linear (but non-unitary) stochastic Schrodinger equations. In the limit where a strong local oscillator is used in the detection, and where the system is not driven, these quantum trajectories can be solved. This gives an alternate derivation of the probability distributions for completed homodyne and heterodyne detection schemes. It also allows the previously intractable problem of real-time adaptive measurements to be treated. The results for an analytically soluble example of adaptive phase measurements are presented, and future developments discussed.
description: 17 pages. A review article publihsed in 1996 which has been picking up some citations, so I thought I would post it here
CORPORATE FARMING: AN UPDATE FOR NEBRASKA
Creators: name: Carriker, Gordon L.
name: Johnson, Bruce B.
name: Baker, Maurice
name: Carriker, Gordon L.
name: Johnson, Bruce B.
name: Baker, Maurice
Publisher: name: Unknown
Year: 1983
Subjects: Farm Management

description: Corporate farming has attracted much attention, particularly with the movement of nonagricultural interests into the farm real estate market. Some believe that nonfarm corporations are taking advantage of tax s heI t ers an d ot her l· nvestment .lnce.ntlv es 1 an d are competl. ng un fa·lrl y with operators of smaller farming units. Others argue, with equal fervor, that corporate farming is not a threat and that it is compatible rather than competitive with "family farm" agriculture. In such an environment of considerable emotional rhetoric, a foundation of factual information is extremely important (1,7). The intent of this report is to provide a clearer perspective of corporate farming in Nebraska. Initially, the recent history of public policy in Nebraska regarding this issue is reviewed. In addition to specific measures regarding corporate farming, policy measures directed at family farming in general are considered. Then several data sources are used in examining the relative importance of corporate ownership and control of farmland in Nebraska. These sources include: (1) the U.S. Department of Commerce 1978 and earlier Censuses of Agriculture; (2) unpublished data from the 1979 Corporate Farm Reports filed with the Nebraska Secretary of State's office; and (3) unpublished data for Nebraska from the 1978 National Landownership Study conducted by the U.S. Department of Agriculture. It should be noted that no single information source provides a comprehensive picture. Also, it is readily apparent that the various data sets do not totally correlate. ~1inor discrepancies occur between reported figures from these sources due to statistical estimation error, differences in definitions, and differences in survey procedure and design. However, this is not believed to be a major limiting factor in gaining a more realistic perspective of the corporate farming issue.
Atomic Scattering Factor for a Spherical Wave and the Near Field Effects in X-ray Fluorescence Holography
Creators: name: Bai, Jianming
Publisher: name: arXiv
Year: 2003
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Formula for calculating the atomic scattering factor for spherical x-ray waves is derived and used to solve the near field effects problem in X-ray Fluorescence Holography theory. A rigorous formalism to calculate the X-ray fluorescence hologram for given atomic distributions is then given so that quantitative structural information can be derived from XFH measurements.
description: 15 pages, 6 figures, a lot of equations
基于体细胞突变数据库筛选免疫原性结直肠癌高频新抗原的方法
Creators: name: 董, 旋
Publisher: name: CNGB
Year: 2019
Subjects: Variation
Other
The somatic mutations data of 321 patients with CRC from China-Colorectal Cancer Project (COCA-CN, https://icgc.org/icgc/cgp/73/371/1001733) in ICGC (International Cancer Genome Consortium) database (http://icgc.org) were downloaded
Synthetic
Medical

description: 结直肠癌是世界高发和高致死率的恶性肿瘤。靶向新抗原的免疫治疗已被证实可以诱导癌症患者肿瘤持续消退，但这些特异性新抗原，仅适用于个体精准治疗。随着大量的高频肿瘤基因突变被发现，这些与突变相关的高频新抗原可覆盖更多人群，具有较强的临床意义。然而目前结直肠癌中是否也存在高频新抗原仍不清楚。本研究利用来源于321个结直肠癌患者的体细胞突变数据库，联合1种标准过滤和7种预测算法，筛选并获得了25个基于中国人高频分型HLA-A*1101限制性的高频新抗原，它们均具有高亲和力（IC50<50 nmol/L）和高呈递分值（>0.90）；其中，除了阳性对照多肽KRAS_G12V8-16外，11个高频新抗原能够在体外诱导细胞毒性T淋巴细胞（cytotoxic T lymphocyte，CTL）分泌γ干扰素（interferon gamma ，IFN-γ），证实具有免疫原性。选取免疫原性最强的新抗原C1orf170_S418G413-421及阳性对照多肽KRAS_G12V8-16体外刺激T细胞，利用流式细胞分选及单细胞转录组测序技术，获得其特异性CTL的免疫组库信息，所构建的TCR-T能够识别新抗原并分泌细胞因子。以上结果表明，本研究开发了一种利用体细胞数据库预测并体外筛选验证具有免疫原性高频新抗原的方法，为结直肠癌及其他癌种的免疫治疗提供了重要的多肽和TCR信息，具有实际的临床应用价值。
Additional file 2 of Improving diagnostic accuracy using a clinical diagnostic support system for medical students during history-taking: a randomized clinical trial
Creators: name: Yanagita, Yasutaka
name: Shikino, Kiyoshi
name: Ishizuka, Kosuke
name: Uchida, Shun
name: Li, Yu
name: Yokokawa, Daiki
name: Tsukamoto, Tomoko
name: Noda, Kazutaka
name: Uehara, Takanori
name: Ikusaka, Masatomi
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 2: Supplement 2. Case samples.
MOESM3 of Danish Evaluation of Your Heart Forecast (DANY): study protocol for a cluster randomised controlled trial on an interactive risk-communication tool aimed at improving adherence of patients with high blood pressure
Creators: name: Jensen, Anders
name: Søndergaard, Jens
name: Kjær, Niels
name: Jackson, Rod
name: Nielsen, Jesper
Publisher: name: figshare
Year: 2020
Subjects: subject: Space Science
subject: Medicine
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 3. Written patient information. The material that every patient is handed in hard copy before inclusion. The material is in Danish.
Additional file 5 of Characterization and use of the ECV304 autoantigenic citrullinome to understand anti-citrullinated protein/peptide autoantibodies in rheumatoid arthritis
Creators: name: de França, Natalia Regine
name: Ménard, Henri André
name: Lora, Maximilien
name: Zhou, Zhijie
name: Rauch, Joyce
name: Hitchon, Carol
name: Andrade, Luís Eduardo Coelho
name: Colmegna, Inés
Publisher: name: figshare
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer

description: Additional file 5: Table S3. Proteins unique to CIT-ECV304 immunoprecipitates.
A FINANCIAL PROFILE OF INDEBTED FARM OPERATORS IN NEBRASKA - 1984
Creators: name: Johnson, Bruce B.
name: Johnson, Bruce B.
Publisher: name: Unknown
Year: 1984
Subjects: Farm Management
Financial Economics

description: The farming sector continues in an extended period of economic stress. Some have described it as the most serious and prolonged period of financial stress in more than 40 years [2]. Real net farm income of farm families during the current decade has been less than two-thirds the average for the 1970's. Farm cash flows have followed a similar pattern. Present economic stress has been further aggravated by rapid expansion of indebtedness during the last half of the 1970's when total debt of the U.S. farming sector more than doubled [5]. During that time, debt expansion paralleled the rapid appreciation of land and other agricultural assets. When interest rates reached unprecedented levels in the 1980's while assets started declining in value, the stage was set for a financial crunch of crisis proportion. For many farmers, economic survival has become the key issue of today [1]. This paper analyzes in some detail the current financial state of Nebraska's farming sector. It is specifically focussed on indebted farm operators, in examining the financial health and credit worthiness of this particular group. After constructing a financial framework to better understand current conditions, implications are then drawn.
Slides | Bayesian temporal factorization for multidimensional time series prediction
Creators: name: Xinyu Chen
Publisher: name: Zenodo
Year: 2021
Subjects: Time series prediction
missing data imputation
low rank
matrix/tensor factorization
vector autoregression (VAR)
Bayesian inference
Markov chain Monte Carlo (MCMC)

description: Presentation slides for our paper: - Xinyu Chen, Lijun Sun (2021). Bayesian temporal factorization for multidimensional time series prediction. IEEE Transactions on Pattern Analysis and Machine Intelligence. (Early Access) Abstract: Large-scale and multidimensional spatiotemporal data sets are becoming ubiquitous in many real-world applications such as monitoring urban traffic and air quality. Making predictions on these time series has become a critical challenge due to not only the large-scale and high-dimensional nature but also the considerable amount of missing data. In this paper, we propose a Bayesian temporal factorization (BTF) framework for modeling multidimensional time series -- in particular spatiotemporal data -- in the presence of missing values. By integrating low-rank matrix/tensor factorization and vector autoregressive (VAR) process into a single probabilistic graphical model, this framework can characterize both global and local consistencies in large-scale time series data. The graphical model allows us to effectively perform probabilistic predictions and produce uncertainty estimates without imputing those missing values. We develop efficient Gibbs sampling algorithms for model inference and model updating for real-time prediction and test the proposed BTF framework on several real-world spatiotemporal data sets for both missing data imputation and multi-step rolling prediction tasks. The numerical experiments demonstrate the superiority of the proposed BTF approaches over existing state-of-the-art methods. More sources: - Preprint: https://arxiv.org/abs/1910.06366 - DOI: https://doi.org/10.1109/TPAMI.2021.3066551 - Data & Python code: https://github.com/xinychen/transdim
The database of influenza A virus in live poultry markets of China
Creators: name: 林鹏
Publisher: name: CNGB
Year: 2021
Subjects: Genome sequencing and assembly
Phenotype or Genotype
Virus sequences
Multiisolate
Medical

description: This is a publicly available database for influenza A virus (IAV) in the live poultry markets (LPMs) from May 2016 to February 2019 in 23 provinces and municipalities in China. Including sampling hosts, sampling dates, samping locations, genome assemblies and annotations.
The Role of Friction in Compaction and Segregation of Granular Materials
Creators: name: Srebro, Yair
name: Levine, Dov
Publisher: name: arXiv
Year: 2003
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We investigate the role of friction in compaction and segregation of granular materials by combining Edwards' thermodynamic hypothesis with a simple mechanical model and mean-field based geometrical calculations. Systems of single species with large friction coefficients are found to compact less. Binary mixtures of grains differing in frictional properties are found to segregate at high compactivities, in contrary to granular mixtures differing in size, which segregate at low compactivities. A phase diagram for segregation vs. friction coefficients of the two species is generated. Finally, the characteristics of segregation are related directly to the volume fraction without the explicit use of the yet unclear notion of compactivity.
description: 9 pages, 6 figures, submitted to Phys. Rev. E
Proposed Farm Bill Impact On The Optimal Hedge Ratios For Crops
Creators: name: Tran, Trang
name: Coble, Keith H.
name: Harri, Ardian
name: Barnett, Barry J.
name: Riley, John Michael
name: Tran, Trang
name: Coble, Keith H.
name: Harri, Ardian
name: Barnett, Barry J.
name: Riley, John Michael
Publisher: name: Unknown
Year: 2013
Subjects: subject: Agricultural Finance
subject: Farm Management
subject: Risk and Uncertainty
subject: crop insurance
subject: simulation
subject: hedging

description: Revenue insurance with shallow loss protection for farmers has been introduced recently. A common attribute of most shallow loss proposals is that they would be area-revenue triggered. The impact on optimal hedge ratios of combining these shallow loss insurance proposals with deep loss farm-level insurance is examined. Since crop insurance, commodity programs and forward pricing are commonly used concurrently to manage crop revenue risk, the optimal combinations of these tools are explored. Numerical analysis in the presence of yield, basis and futures price variability is used to find the futures hedge ratio which maximizes the certainty equivalent of a risk averse producer. The results generally reveal a lower optimal hedge ratio with area-insurance than with individual insurance and show that STAX and ARC tend to slightly increase optimal hedge ratios.
探究自噬与外泌体miRNAs表达水平对阿尔兹海默病、帕金森病早期诊断的意义
Creators: name: 孙, 宇哲
Publisher: name: CNGB
Year: 2020
Subjects: Transcriptome or Gene expression
Targeted Locus (Loci)
Multiisolate
Medical

description: small RNA测序
MOESM3 of Altering the linker in processive GH5 endoglucanase 1 modulates lignin binding and catalytic properties
Creators: name: Wang, Zhen
name: Zhang, Tianrui
name: Long, Liangkun
name: Ding, Shaojun
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 3: Table S2. Processivity on PASC by EG1 and its variants.
New results in solar modulation modeling in light of recent cosmic-ray data from space
Creators: name: Bertucci, Bruna
name: Fiandrini, Emanuele
name: Khiali, Behrouz
name: Tomassetti, Nicola
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Space Physics (physics.space-ph)
subject: FOS: Physical sciences

description: Thanks to space-borne experiments such as the AMS-02 and PAMELA missions in low-Earth orbit, along with the Voyager spacecrafts in the interstellar space, a large collection of multi-channel and time-resolved Galactic cosmic ray (GCR) data has recently become available. Here we present an improved measured-validated model of the "solar modulation" effect, i.e., the temporal evolution of the GCR flux inside the heliosphere caused by the 11-year variability cycle of the Sun's magnetic activity. We present our improved modeling of the structure of the heliosphere, the physical mechanisms of diffusion, drift, and energy losses of GCR particles in the heliosphere. We present our results for the temporal dependence of the key model parameters and their relationship with solar activity proxies. We discuss implications for the GCR transport in magnetic turbulence, and new insights on our understanding of the solar modulation phenomenon.
description: 8 pages, 3 figures, Proceedings of the 36th International Cosmic Ray Conference
Enhanced Worldvolume Supersymmetry and Intersecting Domain Walls in N=1 SQCD
Creators: name: Ritz, A.
name: Shifman, M.
name: Vainshtein, A.
Publisher: name: arXiv
Year: 2004
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We study the worldvolume dynamics of BPS domain walls in N=1 SQCD with N_f=N flavors, and exhibit an enhancement of supersymmetry for the reduced moduli space associated with broken flavor symmetries. We provide an explicit construction of the worldvolume superalgebra which corresponds to an N=2 Kahler sigma model in 2+1D deformed by a potential, given by the norm squared of a U(1) Killing vector, resulting from the flavor symmetries broken by unequal quark masses. This framework leads to a worldvolume description of novel two-wall junction configurations, which are 1/4-BPS objects, but nonetheless preserve two supercharges when viewed as kinks on the wall worldvolume.
description: 35 pages, 3 figures; v2: minor corrections and a reference added, to appear in Phys. Rev. D
Additional file 1 of An exploration of immunohistochemistry-based prognostic markers in patients undergoing curative resections for colon cancer
Creators: name: Bennedsen, Astrid Louise Bjørn
name: Cai, Luyi
name: Hasselager, Rune Petring
name: Özcan, Aysun Avci
name: Mohamed, Khadra Bashir
name: Eriksen, Jens Ole
name: Eiholm, Susanne
name: Bzorek, Michael
name: Fiehn, Anne-Marie Kanstrup
name: Hviid, Thomas Vauvert F.
name: Gögenur, Ismail
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Cell Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer

description: Additional file 1 : Supplementary Table 1. PD-L1, CD3 and CD8 analyses and calculation of scores.
MOESM2 of Danish Evaluation of Your Heart Forecast (DANY): study protocol for a cluster randomised controlled trial on an interactive risk-communication tool aimed at improving adherence of patients with high blood pressure
Creators: name: Jensen, Anders
name: Søndergaard, Jens
name: Kjær, Niels
name: Jackson, Rod
name: Nielsen, Jesper
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 2. The first questionnaire the participants receive (q1). It contains the informed consent as the first question. The questionnaire is in Danish.
Geometry of the 3-Qubit State, Entanglement and Division Algebras
Creators: name: Bernevig, Bogdan A.
name: Chen, Han-Dong
Publisher: name: arXiv
Year: 2003
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We present a generalization to 3-qubits of the standard Bloch sphere representation for a single qubit and of the 7-dimensional sphere representation for 2 qubits presented in Mosseri {\it et al.}\cite{Mosseri2001}. The Hilbert space of the 3-qubit system is the 15-dimensional sphere $S^{15}$, which allows for a natural (last) Hopf fibration with $S^8$ as base and $S^7$ as fiber. A striking feature is, as in the case of 1 and 2 qubits, that the map is entanglement sensitive, and the two distinct ways of un-entangling 3 qubits are naturally related to the Hopf map. We define a quantity that measures the degree of entanglement of the 3-qubit state. Conjectures on the possibility to generalize the construction for higher qubit states are also discussed.
description: 12 pages, 2 figures, final version
LOH
Creators: name: Yang, Zhenjun
Publisher: name: CNGB
Year: 2019
Subjects: Genome sequencing and assembly
Multiisolate
Medical

description: Copy neutral loss of heterozygous (CN-LOH) causes human diseases by the absence of wide type genomic sequences. Herein, we described a method by utilizing low-pass whole-genome sequencing (WGS, ~4-fold) for detecting genome-wide CN-LOHs. It was firstly validated with 53 WGS (>30-fold) and achieved 100% sensitivity and specificity at the resolution of 2.5-Mb. Further validation with 12 clinical samples, this method not only confirmed all known germline and mosaic CN-LOHs but also reported additional CN-LOHs with precise genotypes evidenced by Sanger sequencing. In addition, it was able to determine the parental origin of genomic sequence with parental low-pass WGS.
Energy of Quantum Coulomb Liquid
Creators: name: Baiko, D. A.
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: Using Metropolis method to compute path integrals, the energy of quantum strongly-coupled Coulomb liquid ($1 \leq Γ\leq 175$) composed of distinguishable atomic nuclei and uniform incompressible electron background is calculated from first principles. The range of considered temperatures and densities represents fully-ionized layers of white dwarfs and neutron stars. In particular, the results allow one to determine reliably the heat capacity of ions in dense fluid stellar matter, which is a crucial ingredient for modelling thermal evolution of compact degenerate stars.
description: 6 pages, 3 figures, accepted to MNRAS
MOESM2 of Is aggregated synthetic amorphous silica toxicologically relevant?
Creators: name: Murugadoss, Sivakumar
name: Brule, Sybille
name: Brassinne, Frederic
name: Noham Sebaihi
name: Mejia, Jorge
name: StÃ©Phane Lucas
name: Petry, Jasmine
name: Lode Godderis
name: Mast, Jan
name: Lison, Dominique
name: Hoet, Peter
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology

description: Additional file 2: Figure S4. Effect of probe sonication energy on the size distribution of synthetic amorphous silica (SAS).
Growth of CuFeO$_2$ Single Crystals by the Optical Floating-Zone Technique
Creators: name: Wolff, Nora
name: Schwaigert, Tobias
name: Siche, Dietmar
name: Schlom, Darrell G.
name: Klimm, Detlef
Publisher: name: arXiv
Year: 2019
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: CuFeO$_2$ single crystals up to 50 mm in length and up to 10 mm in diameter were grown by the optical floating-zone method. Stoichiometric polycrystalline rods with a diameter of 6-12 mm were used as feed materials to produce crystals of sufficient size to be used as substrates for the growth of thin films of delafossites. For stable growth along the $c$-axis, low growth rates of 0.4 mm/h are necessary. Due to the incongruent melting behavior of CuFeO$_2$, a stable melt zone requires adjustment of the lamp power during growth. The melting of CuFeO$_2$ is not simply incongruent because the thermodynamic equilibrium includes more than two solid phases and the melt; the gas phase is also involved. The crystals were characterized by X-ray diffraction and X-ray fluorescence measurements.
description: 17 pages, 5 figures, 1 table
MOESM1 of Danish Evaluation of Your Heart Forecast (DANY): study protocol for a cluster randomised controlled trial on an interactive risk-communication tool aimed at improving adherence of patients with high blood pressure
Creators: name: Jensen, Anders
name: Søndergaard, Jens
name: Kjær, Niels
name: Jackson, Rod
name: Nielsen, Jesper
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Additional file 1. The SPIRIT checklist for the protocol.
Peanut Paste/ Butter Consumption Frequency in the Republic of Uganda: Count Data Model Approach
Creators: name: Madhavan-Nambiar, Padmanand
name: Florkowski, Wojciech J.
name: Madhavan-Nambiar, Padmanand
name: Florkowski, Wojciech J.
Publisher: name: Unknown
Year: 2013
Subjects: subject: Agricultural and Food Policy
subject: Food Consumption/Nutrition/Food Safety
subject: International Development
subject: Public Economics
subject: Research Methods/ Statistical Methods
subject: Peanut-paste/butter
subject: consumption frequency
subject: Republic of Uganda
subject: Zero-inflated Negative Binomial
subject: Socioeconomic
subject: Vitamin A fortification
subject: household survey

description: Peanut paste/butter consumption frequency in the Republic of Uganda is analyzed using a household survey data. Estimation results from Zero-inflated Binomial regression conclude that education, household location, color of peanut paste, etc. are important. The ordinal logistic results conclude that peanut paste/butter consumption with vegetables is the most preferred option.
Additional file 1 of Attenuated androgen discontinuation in patients with hereditary angioedema: a commented case series
Creators: name: Maurer, Marcus
name: Magerl, Markus
name: Aygören-Pürsün, Emel
name: Bork, Konrad
name: Farkas, Henriette
name: Longhurst, Hilary
name: Kiani‑Alikhan, Sorena
name: Bouillet, Laurence
name: Boccon-Gibod, Isabelle
name: Cancian, Mauro
name: Zanichelli, Andrea
name: Launay, David
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1. Word document.doc; Patient cases; Further details of attenuated androgen discontinuation in hereditary angioedema cases series.
Properties of a random attachment growing network
Creators: name: Zalanyi, Laszlo
name: Csardi, Gabor
name: Kiss, Tamas
name: Lengyel, Mate
name: Warner, Rebecca
name: Tobochnik, Jan
name: Erdi, Peter
Publisher: name: arXiv
Year: 2003
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: In this study we introduce and analyze the statistical structural properties of a model of growing networks which may be relevant to social networks. At each step a new node is added which selects 'k' possible partners from the existing network and joins them with probability delta by undirected edges. The 'activity' of the node ends here; it will get new partners only if it is selected by a newcomer. The model produces an infinite-order phase transition when a giant component appears at a specific value of delta, which depends on k. The average component size is discontinuous at the transition. In contrast, the network behaves significantly different for k=1. There is no giant component formed for any delta and thus in this sense there is no phase transition. However, the average component size diverges for delta greater or equal than one half.
description: LaTeX, 19 pages, 6 figures. Discussion section, comments, a new figure and a new reference are added. Equations simplified