cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 2 of New residual feed intake criterion for longitudinal data
Creators: name: David, Ingrid
name: Huynh Tran, Van-Hung
name: Gilbert, Hélène
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Evolutionary Biology
subject: Ecology
subject: Plant Biology

description: Additional file 2. SAD functions retained for the phenotypic regression and multi-SAD regression models.
Magnetic wind-driven accretion in dwarf novae
Creators: name: Scepi, Nicolas
name: Dubus, Guillaume
name: Lesur, Geoffroy
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Dwarf novae (DNe) and X-ray binaries exhibit outbursts thought to be due to a thermal-viscous instability in the accretion disk. The disk instability model (DIM) assumes that accretion is driven by turbulent transport, customarily attributed to the magneto-rotational instability (MRI). Recent results point out that MRI turbulence alone fails to reproduce the light curves of DNe. We aim to study the impact of wind-driven accretion on the light curves of DNe. Local and global simulations show that magneto-hydrodynamic winds are present when a magnetic field threads the disk, even for relatively high ratios of thermal pressure to magnetic pressure ($β\approx 10^{5}$). These winds are very efficient in removing angular momentum but do not heat the disk; they do not behave as MRI-driven turbulence. We add wind-driven transport in the angular momentum equation of the DIM, assuming a fixed magnetic configuration: dipolar or constant with radius. We use prescriptions for the wind torque and the turbulent torque derived from shearing box simulations. The wind torque enhances the accretion of matter, resulting in light curves that look like DNe outbursts when assuming a dipolar field with a moment $μ\approx10^{30}\,\mathrm{G\,cm^{3}}$. In the region where the wind dominates, the disk is cold, optically thin and the accretion speed is sonic. This acts as if the inner disk was truncated, leading to higher quiescent X-ray luminosities from the white dwarf boundary layer than expected with the standard DIM. The disk is stabilized if the wind-dominated region is large enough, potentially leading to `dark' disks emitting little radiation. Wind-driven accretion can play a key role in shaping the light curves of DNe and X-ray binaries. Future studies will need to include the time evolution of the magnetic field threading the disk to fully assess its impact on the dynamics of the accretion flow.
description: 7 pages, 6 figures, accepted for publication in A&A
A scaling approximation for structure factors in the integral equation theory of polydisperse nonionic colloidal fluids
Creators: name: Gazzillo, Domenico
name: Giacometti, Achille
name: Della Valle, Raffaele G.
name: Venuti, Elisabetta
name: Carsughi, Flavio
Publisher: name: arXiv
Year: 1999
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: Integral equation of pure liquids, combined with a new "scaling approximation" based on a corresponding states treatment of pair correlation functions, is used to evaluate approximate structure factors for colloidal fluids constituted of uncharged particles with polydispersity in size and energy parameters. Both hard spheres and Lennard-Jones interactions are considered. For polydisperse hard spheres, the scaling approximation is compared to theories utilized by small angle scattering experimentalists (decoupling approximation, local monodisperse approximation)and to the van der Waals one-fluid theory. The results are tested against predictions from analytical expressions, exact within the Percus-Yevick approximation. For polydisperse Lennard-Jones particles, the scaling approximation combined with a "modified hypernetted chain" integral equation, is tested against molecular dynamics data generated for the present work. Despite ist simplicity, the scaling approximation exhibits a satisfactory performance for both potentials and represents a considerable improvement over the above mentioned theories. Shortcomings of the proposed theory, its applicability to the analysis of experimental scattering data, and its possible extensions to different potentials are finally discussed.
description: 12 pages, 7 postscript figures (included), Latex 3.0, uses aps.sty
Controllable fusion of electromagnetic bosons in two-dimensional semiconductors
Creators: name: Andreev, Sergueï V.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: Optics (physics.optics)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We propose a physical principle for implementation of controllable interactions of identical electromagnetic bosons (excitons or polaritons) in two-dimensional (2D) semiconductors. The key ingredients are tightly bound biexcitons and in-plane anisotropy of the host structure due to, e.g., a uniaxial strain. We show that anisotropy-induced splitting of the radiative exciton doublet couples the biexciton state to continua of boson scattering states. As a result, two-body elastic scattering of bosons may be resonantly amplified when energetically tuned close to the biexciton by applying a transverse magnetic field or tuning the coupling with the microcavity photon mode. At the resonance, bosonic fields undergo quantum reaction of fusion accompanied by their squeezing. For excitons, we predict giant molecules (Feshbach dimers) which can be obtained from a biexciton via rapid adiabatic sweeping of the magnetic field across the resonance. The molecules possess non-trivial entanglement properties. Our proposal holds promise for the strongly-correlated photonics and quantum chemistry of light.
description: 11-pages main text with 3 figures
Additional file 1 of New residual feed intake criterion for longitudinal data
Creators: name: David, Ingrid
name: Huynh Tran, Van-Hung
name: Gilbert, Hélène
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Evolutionary Biology
subject: Ecology
subject: Plant Biology

description: Additional file 1. Demonstration of the calculation of RFI with the multi-SAD regression model.
Theory of dipole radiation near a Dirac photonic crystal
Creators: name: Perczel, Janos
name: Lukin, Mikhail D.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Atomic Physics (physics.atom-ph)
subject: Optics (physics.optics)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We develop an analytic formalism to describe dipole radiation near the Dirac cone of a two-dimensional photonic crystal slab. In contrast to earlier work, we account for all polarization effects and derive a closed-form expression for the dyadic Green's function of the geometry. Using this analytic Green's function, we demonstrate that the dipolar interaction mediated by the slab exhibits winding phases, which are key ingredients for engineering topological systems for quantum emitters, as discussed in detail in J. Perczel et al., (2018), arXiv:1810.12299. As an example, we study the coherent atomic interactions mediated by the Dirac cone, which were recently shown to be unusually long-range with no exponential attenuation. These results pave the way for further, rigorous analysis of emitters interacting in photonic crystals via photonic Dirac cones.
description: 8 pages, 6 figures
Magnetic susceptibility of insulators from first principles
Creators: name: Mauri, Francesco
name: Louie, Steven G.
Publisher: name: arXiv
Year: 1996
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We present an {\it ab initio} approach for the computation of the magnetic susceptibility $χ$ of insulators. The approach is applied to compute $χ$ in diamond and in solid neon using density functional theory in the local density approximation, obtaining good agreement with experimental data. In solid neon, we predict an observable dependence of $χ$ upon pressure.
description: Revtex, to appear in Physical Review Letter
Model code and regional configuration for 'Modeling Indian Ocean circulation to study marine debris dispersion: insights into high-resolution and Stokes drift effects'
Creators: name: Weiss, Lisa
Publisher: name: figshare
Year: 2025
Subjects: classificationCode: 370803
subject: Physical oceanography

description: This file includes the codes of the Symphonie ocean model (version 3.6.6) and the Indian Ocean configurations, together with both model grids, the first corresponding to the HR telescopic grid (from 2 km in coastal zones) and the second to the 1/12° grid (created for comparisons of resolution effects).
Scalability Aspects of Cell-Free Massive MIMO
Creators: name: Interdonato, Giovanni
name: Frenger, Pål
name: Larsson, Erik G.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Information Theory (cs.IT)
subject: Signal Processing (eess.SP)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: Ubiquitous cell-free massive MIMO (multiple-input multiple-output) combines massive MIMO technology and user-centric transmission in a distributed architecture. All the access points (APs) in the network cooperate to jointly and coherently serve a smaller number of users in the same time-frequency resource. However, this coordination needs significant amounts of control signalling which introduces additional overhead, while data co-processing increases the back/front-haul requirements. Hence, the notion that the "whole world" could constitute one network, and that all APs would act as a single base station, is not scalable. In this study, we address some system scalability aspects of cell-free massive MIMO that have been neglected in literature until now. In particular, we propose and evaluate a solution related to data processing, network topology and power control. Results indicate that our proposed framework achieves full scalability at the cost of a modest performance loss compared to the canonical form of cell-free massive MIMO.
description: Paper published in ICC 2019 - 2019 IEEE International Conference on Communications (ICC). {\copyright} 2019 IEEE. Personal use of this material is permitted. Permission from IEEE must be obtained for all other uses
Additional file 3 of Can intersectionality help with understanding and tackling health inequalities? Perspectives of professional stakeholders
Creators: name: Holman, Daniel
name: Salway, Sarah
name: Bell, Andrew
name: Beach, Brian
name: Adebajo, Adewale
name: Ali, Nuzhat
name: Butt, Jabeer
Publisher: name: figshare
Year: 2021
Subjects: subject: Sociology
subject: FOS: Sociology

description: Additional file 3. Workshop summary.
Chemical constituents and in vitro antimicrobial activity of rhizome essential oils of Zingiber densissimum S.Q.Tong & Y.M.Xia and Kaempferia laotica Gagnep. growing wild in Vietnam
Creators: name: Nguyen-Ngoc, Hieu
name: Giang, Le Duc
name: Tran-Trung, Hieu
name: Thang, Tran Dinh
name: Tuan, Nguyen Hoang
name: Nguyen, Dang Khoa
name: Duc, Nguyen Danh
name: Nhi, Nguyen Thanh To
name: Le, Chi Toan
name: An, Nguyen Thi Giang
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Science Policy
subject: Biological Sciences not elsewhere classified

description: Zingiber densissimum S.Q.Tong & Y.M.Xia and Kaempferia laotica Gagnep., belong to the Zingiberaceae family, which were found in Vietnam and Laos in recent years. To date, there has been very limited information on their phytochemical profiles and pharmacological activities. The present study was conducted to give insights into the chemical composition of the essential oils isolated from two plants and their antimicrobial activities. Gas Chromatographic–Mass Spectral (GC-MS) analysis was utilized to identify the chemical composition of the rhizome essential oils of Z. densissimum and K. laotica. The antimicrobial activities were evaluated on three Gram-positive bacterial strains, three Gram-negative bacterial strains, and a pathogenic yeast. The GC-MS analysis showed that β-pinene (38.36%), β-phellandrene (26.85%), and α-pinene (13.31%) were the most dominant components in Z. densissimum rhizome essential oil, while K. laotica rhizome essential oil was found to contain mainly camphene (23.44%), α-pinene (10.69%), 3-carene (8.60%) and β-pinene (6.85%). As for the antimicrobial activity test results, the rhizome essential oil of Z. densissimum displayed potent activities against Candida albicans (MIC value = 2 μg/mL), Enterococcus faecalis, Staphylococcus aureus, and Escherichia coli (MIC values = 8 μg/ mL). Meanwhile, the rhizome essential oil of K. laotica showed weaker activities against all investigated microbial strains (MIC values ranging from 32 to 256 μg/mL). The study results indicated the chemical constituents of the essential oils prepared from these plants. The two essential oil samples were also shown to exhibit potential antimicrobial activities against several pathogenic bacterial and fungal strains.
Additional file 2 of Can intersectionality help with understanding and tackling health inequalities? Perspectives of professional stakeholders
Creators: name: Holman, Daniel
name: Salway, Sarah
name: Bell, Andrew
name: Beach, Brian
name: Adebajo, Adewale
name: Ali, Nuzhat
name: Butt, Jabeer
Publisher: name: figshare
Year: 2021
Subjects: subject: Sociology
subject: FOS: Sociology

description: Additional file 2. Survey for policy and practice professionals.
Inkinga Kilburn 1988
Creators: name: Kilburn, Richard N.
Publisher: name: Zenodo
Year: 2005
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Neogastropoda
Horaiclavidae
Inkinga

description: Inkinga Kilburn, 1988
 Type species (o.d.): Pleurotoma (Clionella) platystoma E.A. Smith, 1877.
Remarks: Only two species, both endemic to South Africa, have previously been referred to this genus.
description: Published as part of Kilburn, Richard N., 2005, New species of Drilliidae and Turridae from southern Africa (Mollusca: Gastropoda: Conoidea), pp. 85-92 in African Invertebrates 46 on page 85, DOI: 10.5281/zenodo.7667122
Confinement symmetry, mobility anisotropy, and metallic behavior in (311)A GaAs 2D holes
Creators: name: Papadakis, S. J.
name: De Poortere, E. P.
name: Shayegan, M.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We study two dimensional hole systems confined to GaAs quantum wells grown on the (311)A surface of GaAs substrates. Such samples exhibit an in-plane mobility anisotropy. At constant 2D hole density, we vary the symmetry of the quantum well potential and measure the temperature dependence of the resistivity along two different current directions, in a regime where the samples exhibit metallic behavior. The symmetry has a significant and non-trivial effect on the metallic behavior. Moreover, differences between the temperature-dependence of the resistivity along the two mobility directions point to specific scattering mechanisms being important in the expression of the metallic behavior.
description: 4 pages with figs
Offline Reinforcement Learning with Imbalanced Datasets
Creators: name: Jiang, Li
name: Cheng, Sijie
name: Qiu, Jielin
name: Xu, Haoran
name: Chan, Wai Kin
name: Ding, Zhao
Publisher: name: arXiv
Year: 2023
Subjects: subject: Machine Learning (cs.LG)
subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: The prevalent use of benchmarks in current offline reinforcement learning (RL) research has led to a neglect of the imbalance of real-world dataset distributions in the development of models. The real-world offline RL dataset is often imbalanced over the state space due to the challenge of exploration or safety considerations. In this paper, we specify properties of imbalanced datasets in offline RL, where the state coverage follows a power law distribution characterized by skewed policies. Theoretically and empirically, we show that typically offline RL methods based on distributional constraints, such as conservative Q-learning (CQL), are ineffective in extracting policies under the imbalanced dataset. Inspired by natural intelligence, we propose a novel offline RL method that utilizes the augmentation of CQL with a retrieval process to recall past related experiences, effectively alleviating the challenges posed by imbalanced datasets. We evaluate our method on several tasks in the context of imbalanced datasets with varying levels of imbalance, utilizing the variant of D4RL. Empirical results demonstrate the superiority of our method over other baselines.
Additional file 1 of Can intersectionality help with understanding and tackling health inequalities? Perspectives of professional stakeholders
Creators: name: Holman, Daniel
name: Salway, Sarah
name: Bell, Andrew
name: Beach, Brian
name: Adebajo, Adewale
name: Ali, Nuzhat
name: Butt, Jabeer
Publisher: name: figshare
Year: 2021
Subjects: subject: Sociology
subject: FOS: Sociology

description: Additional file 1. Survey for researchers.
Additional file 2 of SCAPP: an algorithm for improved plasmid assembly in metagenomes
Creators: name: Pellow, David
name: Zorea, Alvah
name: Probst, Maraike
name: Furman, Ori
name: Segal, Arik
name: Mizrahi, Itzhak
name: Shamir, Ron
Publisher: name: figshare
Year: 2021
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Supplementary methods, experimental settings information, and results supporting the main text of this paper, including Figures S1-S4, Supplementary Tables 1 and 2. PDF file.
Additional file 1 of Racial/ethnic, gender, and age group differences in cardiometabolic risks among adults in a Northern California health plan: a cross-sectional study
Creators: name: Gordon, Nancy P.
name: Hsueh, Loretta
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1: Supplemental Table 1. Unweighted base denominators and weighted age distributions for racial/ethnic subgroups- prior to age standardization1.
Density Matrix Renormalization Group Applied to the Ground State of the XY-Spin-Peierls System
Creators: name: Caron, L. G.
name: Moukouri, S.
Publisher: name: arXiv
Year: 1996
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: We use the density matrix renormalization group (DMRG) to map out the ground state of a XY-spin chain coupled to dispersionless phonons of frequency $% ω$. We confirm the existence of a critical spin-phonon coupling $% α_c\propto ω^{0.7}$ for the onset of the spin gap bearing the signature of a Kosterlitz-Thouless transition. We also observe a classical-quantum crossover when the spin-Peierls gap $Δ$ is of order $% ω$. In the classical regime, $Δ>ω$, the mean-field parameters are strongly renormalized by non-adiabatic corrections. This is the first application of the DMRG to phonons.
description: 10 pages, 5 figures. To be published in PRL
Additional file 1: of VIA Familyâ a family-based early intervention versus treatment as usual for familial high-risk children: a study protocol for a randomized clinical trial
Creators: name: MĂźller, Anne
name: GjĂ¸De, Ida
name: Eigil, Mette
name: Busck, Helle
name: Bonne, Merete
name: Nordentoft, Merete
name: Thorup, Anne
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: 60506 Virology
subject: FOS: Biological sciences
subject: Computational Biology

description: Completed SPIRIT checklist. (DOC 127 kb)
Chemical characterization and antifungal potential of Trigonella foenum-graecum L. followed by molecular docking studies
Creators: name: Katnoria, Harsh
name: Kaushal, Sonia
name: Hunjan, Mandeep Singh
name: Kaur, Vishaldeep
name: Sharma, Purshotam
name: Jangra, Raman
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified

description: The present study involves the chemical characterization and antifungal potential of fenugreek Trigonella foenum-graecum L. (fenugreek) seeds/leaves essential oils and their major constituents along with computational molecular docking calculations. The fenugreek seeds and leaves essential oils were extracted by hydro-distillation and characterized by Gas chromatography-mass spectrometry and Gas chromatography-flame ionization detector. Benzyl acetate (51.70%) and γ-tocopherol (42.09%), the major compounds in fenugreek seeds and leaves essential oils respectively were isolated by column chromatography. The essential oils and their major compounds were investigated for their antifungal activity against Rhizoctonia solani and Drechslera oryzae by the Poison food technique. Among all the treatments, fenugreek leaves essential oil was the most effective with ED50 values of 850 and 1120 ppm against R. solani and D. oryzae respectively. All the treatments were found more effective against R. solani than D. oryzae. Molecular docking studies of the major compounds present in the essential oils against R. solani agglutinin (PDB ID 4G9N and 4G9M) suggested that 9,19-cyclolanost-24-en-3-ol present in abundance in fenugreek leaves essential oil than the seeds essential oil bound effectively with the targeted protein with the docking score of -6.14 kcal mol−1. Overall, our combined experimental and computational study provides scientific justification for the use of fenugreek leaves essential oil as a natural antifungal agent against R. solani. Moreover, fenugreek leaves essential oil being most effective against D. oryzae may also be used as a natural antifungal agent against it.
Theory and applications of the stress density
Creators: name: Filippetti, Alessio
name: Fiorentini, Vincenzo
Publisher: name: arXiv
Year: 1999
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Drawing on the theory of quantum mechanical stress, we introduce the stress density in density functional theory. In analogy with the Chetty-Martin energy density, the stress density provides a spatial resolution of the contributions to the integrated macroscopic stress tensor. We give specific prescriptions for a practical and efficient implementation in the plane wave ultrasoft pseudopotential method within the local-density approximation. We demonstrate the abilities of the stress density studying a set of representative test cases from surface and interface physics. In perspective, the stress density emerges as vastly more powerful and predictive than the integrated macroscopic stress.
description: RevTeX 10 pages, embedded figures
Additional file 1 of MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction
Creators: name: Murigneux, Valentine
name: Roberts, Leah W.
name: Forde, Brian M.
name: Phan, Minh-Duy
name: Nhu, Nguyen Thi Khanh
name: Irwin, Adam D.
name: Harris, Patrick N. A.
name: Paterson, David L.
name: Schembri, Mark A.
name: Whiley, David M.
name: Beatson, Scott A.
Publisher: name: figshare
Year: 2021
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics

description: Additional file 1: Table S1. Read length and quality metrics per isolate. Table S2. assembly results for EC958. Table S3. EC958 assembly results using different Flye parameters, demultiplexing tools and read filtering parameters. Table S4. Polishing tool comparison Table S5. Polishing comparison using other assemblers Table S6. Hybrid assembly comparison to Flye+Racon/medaka+NextPolish Table S7. final assembly comparisons between Guppy versions and methylation-aware basecalling. Table S8. MicroPIPE v0.8 results for 11 ST131. Table S9. SNP types for clade C unpolished/Illumina unpolished assemblies. Table S10. Demultiplexing comparison between qcat and Guppy Table S11. Assembly comparison using different filtering parameters(qcat demultiplexing). Table S12. Assembly comparison using different filtering parameters (guppy demultiplexing). Table S13. Assembly comparison using ONT raw or corrected reads Figure S1. Demultiplexing metrics. Figure S2. Long-read metrics using different demultiplexing tools and read filtering parameters (using EC958 ONT data). Figure S3. comparison of SNPs/indels in ONT assemblies vs. complete EC958 chromosome. Figure S4. Motif enriched in the sequences around the 401 shared SNPs from the branch leading to discrepant ONT assemblies.
Additional file 1: of Modeling double strand break susceptibility to interrogate structural variation in cancer
Creators: name: Ballinger, Tracy
name: Bouwman, Britta
name: Mirzazadeh, Reza
name: Garnerone, Silvano
name: Crosetto, Nicola
name: Semple, Colin
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology
subject: 110309 Infectious Diseases

description: Figure S1. Correlations between DSB profiles from three DSB HTS experiments from three different cell types at 50â kb resolution. Figure S2. Chromatin and genomic features are intercorrelated. Figure S3. Correlations between individual genomic features and DSB frequency from NHEK DSBCapture data. Figure S4. Hi-C eigenvector data improves the random forest model for DSB frequency. Figure S5. Predicted versus observed values for one third of the NHEK DSBCapture data where the random forest model was trained on the other two thirds of the data. Figure S6. ICGC SV types and cohorts. Figure S7. TCGA CNV data across cancer types. Figure S8. Correlation between predicted DSB values and observed SV breaks. Figure S9. Correspondence between SV and DSB shown for NHEK DSBCapture data and ICGC pancancer SV calls. Figure S10. TCGA CNV breakpoint enriched regions have elevated DSB frequencies in blood cancers. Figure S11. Inference of positively and negatively selected regions in ICGC breast cancers. Figure S12. Chromatin state enrichments for d-score classes. Figure S13. Finding the best-fit distribution for SV breakpoint frequencies. Figure S14. Finding the best-fit distribution for predicted DSB values. Figure S15. Finding the best-fit distribution for d-score frequencies. (DOCX 12760 kb)
Constraints on field flows of quintessence dark energy
Creators: name: Tosone, Federico
name: Haridasu, Balakrishna S.
name: Luković, Vladimir V.
name: Vittorio, Nicola
Publisher: name: arXiv
Year: 2018
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: The quest for understanding the late-time acceleration is haunted by an immense freedom in the analysis of dynamical models for dark energy in extended parameter spaces. Often-times having no prior knowledge at our disposal, arbitrary choices are implemented to reduce the degeneracies between parameters. We also encounter this issue in the case of quintessence fields, where a scalar degree of freedom drives the late-time acceleration. In this study, we implement a more physical prescription, the \textit{flow} condition, to fine-tune the quintessence evolution for several field potentials. We find that this prescription agrees well with the most recent catalogue of data, namely supernovae type Ia, baryon acoustic oscillations, cosmic clocks and distance to last scattering surface, and it enables us to infer the initial conditions for the field, both potential and cosmological parameters. At $2σ$ we find stricter bounds on the potential parameters $f/m_{pl}>0.26$ and $n<0.15$ for the PNGB and IPL potentials, respectively, while constraints on cosmological parameters remain extremely consistent across all assumed potentials. By implementing information criteria to assess their ability to fit the data, we do not find any evidence against thawing models, which in fact are statistically equivalent to $Λ$CDM, and the freezing ones are moderately disfavoured. Through our analysis we place upper bounds on the slope of quintessence potentials, consequently revealing a strong tension with the recently proposed swampland criterion, finding the 2$σ$ upper bound of $λ\sim 0.31$ for the exponential potential.
description: 17 pages, 7 plots, 3 tables. Comments are welcome
Chemical composition and antioxidant activity of black pepper (Piper nigrum L.) fructus essential oil hydrodistillation fractions
Creators: name: Milenković, Aleksandra
name: Stanojević, Jelena
name: Cvetković, Dragan
name: Stanojević, Ljiljana
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Science Policy
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Hematology

description: The aim of this study was to examine the effect of hydrodistillation time on the chemical composition and antioxidant activity of collected essential oils’ (EOs’) fractions from black pepper fructus for five hydrodistillation periods: I (0-15 min), II (15-30 min), III (30-60 min), IV(60-90 min) and V (90-120 min). In this way, an essential oil with the desired chemical composition and antioxidant activity can be selected. The essential oil was obtained by Clevenger-type hydrodistillation (CHD). The qualitative and quantitative composition of the collected EOs’ fractions was determined by GC-MS and GC-FID analysis. The efficiency of EOs’ fractions to scavenge DPPH radicals was evaluated spectrophotometrically. Essential oil yield was 3.0 ± 0.050 ml/100 g of plant material after 120 min of CHD. The content of monoterpene hydrocarbons and aromatic compounds decreased, while the content of oxygenated monoterpenes, sesquiterpene hydrocarbons and oxygenated sesquiterpenes increased with the time of CHD. The most abundant compound of EOs’ fractions was (E)-caryophyllene, whose content increased with the time of CHD (I-V: 24.9-36.6%). Results indicated that all collected EOs’ fractions exhibited antioxidant activity (EC50 values were in the range I-V: 81.27±0.327–8.02±0.044 mg/ml), where fraction V showed the highest activity. This study proved that CHD time and fractionation affect the composition and antioxidant activity of black pepper essential oil. Future research may be extended to examine other biological activities of black pepper EOs’ fractions, as well as synergistic effects of other identified active components of the essential oil, in addition to (E)-caryophyllene, that would affect biological activities.
Chiral sum rules to second order in quark mass
Creators: name: Golowich, Eugene
name: Kambor, Joachim
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: A new calculation of the isospin and hypercharge axialvector current propagators ($Δ_{A33}^{μν}(q^2)$ and $Δ_{A88}^{μν}(q^2)$) to two loops in SU(3) x SU(3) chiral perturbation theory is used to derive chiral spectral function sum rules valid to second order in the light quark masses. Explicit forms are given for the three-pion isospin axialvector spectral functions at low energy and application of the sum rules to the determination of counterterms of the chiral lagrangian is discussed.
description: Figures extended down to threshold; Eq. (19) expressed in simplified form
Additional file 5 of Interspecific sensitivity of European amphibians towards two pesticides and comparison to standard test species
Creators: name: Adams, Elena
name: Leeb, Christoph
name: Roodt, Alexis P.
name: Brühl, Carsten A.
Publisher: name: figshare
Year: 2021
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Additional file 5: Table S4. Contingency table of estimated difference of LC50 via CI ratio testing.
Modeling Indian Ocean circulation to study marine debris dispersion: insights into high-resolution and Stokes drift effects
Creators: name: Weiss, Lisa
Publisher: name: figshare
Year: 2025
Subjects: classificationCode: 370803
subject: Physical oceanography

description: This file includes the codes of the Symphonie ocean model (version 3.6.6) and the Indian Ocean configurations, together with both model grids, the first corresponding to the HR telescopic grid (from 2 km in coastal zones) and the second to the 1/12° grid (created for comparisons of resolution effects).
title: ADCO, Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Cart. 32 (G 136), 745 folios, f. 0808
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Archives départementales de la Côte-d'Or, Cart. 32 (G 136), 745 folios, f. 0808, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Archives départementales de la Côte-d'Or, Cart. 32 (G 136), 745 folios, f. 0808, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
Naudedrillia Kilburn 1988
Creators: name: Kilburn, Richard N.
Publisher: name: Zenodo
Year: 2005
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Neogastropoda
Pseudomelatomidae
Naudedrillia

description: Naudedrillia Kilburn, 1988
 Type species (o.d.) Naudedrillia nealyoungi Kilburn, 1988.
 Remarks: The foregut anatomy of Naudedrillia praetermissa (E.A. Smith, 1904) was described by Kantor et al. (1997: 70).
 The operculum of the new species here described differs from that known in other species of Naudedrillia in that the nucleus forms a raised, triangular ‘beak’ externally. The significance of this character is unknown.
 Addendum to key to genus Naudedrillia
The following species may be added to the key given by Kilburn (1988: 278) between couplets 2 and 3:
 2a. Spiral sculpture present over entire surface.......................................................... 3 – Spiral sculpture restricted to base of last whorl.................................. hayesi sp. n.
description: Published as part of Kilburn, Richard N., 2005, New species of Drilliidae and Turridae from southern Africa (Mollusca: Gastropoda: Conoidea), pp. 85-92 in African Invertebrates 46 on page 90, DOI: 10.5281/zenodo.7667122
Additional file 1 of Impact of rural versus urban setting on kidney markers: a cross-sectional study in South-Kivu, DRCongo
Creators: name: Masimango, Mannix Imani
name: Hermans, Michel P.
name: Malembaka, Espoir Bwenge
name: Wallemacq, Pierre
name: Sumaili, Ernest Kiswaya
name: Fillée, Catherine
name: D’Hoore, William
name: Winkler, Cheryl A.
name: Limou, Sophie
name: Jadoul, Michel
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Supplementary Figure 1. Flow chart of the study population and data availability. Supplementary Figure 2. Correlation between urine specific gravity and osmolality in sub-group of urban (red line) and rural (gray line) subjects. Supplementary Table 1. Diagnostic performance of urine dipstick for the detection of ACR ≥ 30 mg/g (A2) and ACR ≥ 300 mg/g (A3). Supplementary Table 2. Diagnostic performance of urine dipstick in the study population.
title: ADCO, Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome VI, Cart. 190 (11 H 75), 316 folios, f. 0088r
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome VI, Archives départementales de la Côte-d'Or, Cart. 190 (11 H 75), 316 folios, f. 0088r, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome VI, Archives départementales de la Côte-d'Or, Cart. 190 (11 H 75), 316 folios, f. 0088r, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: abbaye de Cîteaux
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Chemical contents and antibacterial activity of volatile oils from Paederia pilifera
Creators: name: Marada, Hutsaya
name: Puangsombat, Pakawan
name: Promsawan, Napapha
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Virology

description: Volatile oils from aerial parts, leaves and flowers of Paederia pilifera were extracted by steam distillation. The volatile constituents and chemical compositions were investigated by gas chromatography-mass spectrometry (GC-MS). A total of 28, 18 and 26 volatile compounds were identified in the oils obtained from the aerial parts, leaves and flowers, respectively. Interestingly, hexadecanoic acid (25) was the highest component, accounting for 56.78% of the volatile oil derived from the aerial parts and 60.37% from the leaves. The most abundant compounds in the volatile oil from flowers were diisooctyl sebacate (42, 27.03%), followed by bis(2-ethylhexyl) phthalate (37, 9.03%) and docosane (34, 6.82%). The volatile oils of Paederia pilifera were evaluated for antibacterial activity and the bioassay results revealed that the oils displayed antibacterial activity against strains of Bacillus cereus B4ac-DSM4384, Staphylococcus aureus TISTR746 and Escherichia coli JM107 with values of MIC ranging from 0.278 to 35.63 mg/mL. The flower oil was found to be the most active agent against Escherichia coli with MIC value of 0.278 mg/mL. The volatile oil obtained from the aerial parts exhibited antimicrobial activity against all three strains of Bacillus cereus, Staphylococcus aureus and Escherichia coli with MIC values of 33.63, 5.11 and 0.531 mg/mL, respectively. The leaf oil possessed antibacterial activity against the strains of Bacillus cereus and Escherichia coli with MIC values of 31.64 and 0.494 mg/mL, respectively and a similar pattern was observed in the flower oil with MIC values of 35.63 and 0.278 mg/mL, respectively.
On the normal form of synchronization and resonance between vorticity waves in shear flow instability
Creators: name: Heifetz, Eyal
name: Guha, Anirban
Publisher: name: arXiv
Year: 2019
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: A central mechanism of linearised two dimensional shear instability can be described in terms of a nonlinear, action-at-a-distance, phase-locking resonance between two vorticity waves which propagate counter to their local mean flow as well as counter to each other. Here we analyze the prototype of this interaction as an autonomous, nonlinear dynamical system. The wave interaction equations can be written in a generalized Hamiltonian action-angle form. The pseudo-energy serves as the Hamiltonian of the system, the action coordinates are the contribution of the vorticity waves to the wave-action, and the angles are the phases of the vorticity waves. The term "generalized action-angle" emphasizes that the action of each wave is generally time dependent, which allows instability. The synchronization mechanism between the wave phases depends on the cosine of their relative phase, rather than the sine as in the Kuramoto model. The unstable normal modes of the linearised dynamics correspond to the stable fixed points of the dynamical system and vice versa. Furthermore, the normal form of the wave interaction dynamics reveals a new type of inhomogeneous bifurcation -- annihilation of a pair of stable and unstable fixed points yields the emergence of two neutral center fixed points of opposite circulation.
Optimal preprocessing of WiFi CSI for sensing applications
Creators: name: Ratnam, Vishnu V.
name: Chen, Hao
name: Chang, Hao Hsuan
name: Sehgal, Abhishek
name: Jianzhong
name: Zhang
Publisher: name: arXiv
Year: 2023
Subjects: subject: Information Theory (cs.IT)
subject: Signal Processing (eess.SP)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: Due to its ubiquitous and contact-free nature, the use of WiFi infrastructure for performing sensing tasks has tremendous potential. However, the channel state information (CSI) measured by a WiFi receiver suffers from errors in both its gain and phase, which can significantly hinder sensing tasks. By analyzing these errors from different WiFi receivers, a mathematical model for these gain and phase errors is developed in this work. Based on these models, several theoretically justified preprocessing algorithms for correcting such errors at a receiver and, thus, obtaining clean CSI are presented. Simulation results show that at typical system parameters, the developed algorithms for cleaning CSI can reduce noise by $40$% and $200$%, respectively, compared to baseline methods for gain correction and phase correction, without significantly impacting computational cost. The superiority of the proposed methods is also validated in a real-world test bed for respiration rate monitoring (an example sensing task), where they improve the estimation signal-to-noise ratio by $20$% compared to baseline methods.
description: Paper is accepted to IEEE Transactions on Wireless Communications
Time evolution of models described by one-dimensional discrete nonlinear Schrödinger equation
Creators: name: Datta, P. K.
name: Kundu, K.
Publisher: name: arXiv
Year: 1996
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: The dynamics of models described by a one-dimensional discrete nonlinear Schrödinger equation is studied. The nonlinearity in these models appears due to the coupling of the electronic motion to optical oscillators which are treated in adiabatic approximation. First, various sizes of nonlinear cluster embedded in an infinite linear chain are considered. The initial excitation is applied either at the end-site or at the middle-site of the cluster. In both the cases we obtain two kinds of transition: (i) a cluster-trapping transition and (ii) a self-trapping transition. The dynamics of the quasiparticle with the end-site initial excitation are found to exhibit, (i) a sharp self-trapping transition, (ii) an amplitude-transition in the site-probabilities and (iii) propagating soliton-like waves in large clusters. Ballistic propagation is observed in random nonlinear systems. The effect of nonlinear impurities on the superdiffusive behavior of random-dimer model is also studied.
description: 16 pages, REVTEX, 9 figures available upon request, To appear in Physical Review B
Statistical Thermodynamics of Crystal Plasticity
Creators: name: Langer, J. S.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: This article is written in memory of Pierre Hohenberg with appreciation for his deep commitment to the basic principles of theoretical physics. I summarize recent developments in the theory of dislocation-enabled deformation of crystalline solids. This topic is especially appropriate for the Journal of Statistical Physics because materials scientists, for decades, have asserted that statistical thermodynamics is inapplicable to dislocations. By use of simple, first-principles analyses and comparisons with experimental data, I argue that these materials scientists have been wrong, and that this field should now be revisited because of its broad-ranging intellectual and technological importance.
description: To be submitted to a special issue of the Journal of Statistical Physics in memory of Pierre C. Hohenberg