cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Denisovan DNA in Late Pleistocene sediments from Baishiya Karst Cave on the Tibetan Plateau
Creators: name: Zhang, D
name: Xia, H
name: Chen, F
name: Li, Bo
name: Slon, V
name: Cheng, Ting
name: Yang, R
name: Jacobs, Zenobia
name: Dai, Q
name: Massilani, D
name: Shen, X
name: Wang, J
name: Feng, X
name: Cao, P
name: Yang, MA
name: Yao, J
name: Yang, J
name: Madsen, DB
name: Han, Y
name: Ping, W
name: Liu, F
name: Perreault, C
name: Chen, X
name: Meyer, M
name: Kelso, J
name: Pääbo, S
name: Fu, Q
Publisher: name: University of Wollongong
Year: 2025
Subjects: classificationCode: 4401
subject: Anthropology
subject: FOS: Sociology
classificationCode: 3705
subject: Geology
subject: FOS: Earth and related environmental sciences
classificationCode: 43
subject: History, heritage and archaeology
classificationCode: 4301
subject: Archaeology
classificationCode: 37
subject: Earth sciences
classificationCode: 44
subject: Human society

description: A late Middle Pleistocene mandible from Baishiya Karst Cave (BKC) on the Tibetan Plateau has been inferred to be from a Denisovan, an Asian hominin related to Neanderthals, on the basis of an amino acid substitution in its collagen. Here we describe the stratigraphy, chronology, and mitochondrial DNA extracted from the sediments in BKC. We recover Denisovan mitochondrial DNA from sediments deposited ~100 thousand and ~60 thousand years ago (ka) and possibly as recently as ~45 ka. The long-term occupation of BKC by Denisovans suggests that they may have adapted to life at high altitudes and may have contributed such adaptations to modern humans on the Tibetan Plateau.
Multi-frequency VLBA Polarimetry of the high-redshift GPS Quasar OQ172
Creators: name: Liu, Yi
name: Jiang, D. R.
name: Gu, Minfeng
name: Gurvits, L. I.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Multi-frequency Very Long Baseline Array (VLBA) polarimetry observation of the GHz-Peaked Spectrum (GPS) quasar OQ172 (J1445+0958) has been performed at 1.6, 2.2, 4.8, 8.3 and 15.3 GHz in 2005. Core-jet structures are detected in all bands with the jet strongly bent at about 3 mas from the core. The radio emission of the source is polarised at all five bands. We study the Faraday Rotation in the core and jet components at all five bands, and find good linear fits of Faraday Rotation in the core and jet components at 4.8 and 8.3 GHz. At these two frequencies, the Rotation Measure (RM) is $\sim 2000~\rm rad~m^{-2}$ in the core and $\sim 700~\rm rad~m^{-2}$ in the inner jet components and continues to decrease at the outer jet parts. We find that the depolarisation at 4.8 and 8.3 GHz might be caused by the internal medium in the source. We investigate consistency of the turnover spectra of VLBI components with the Synchrotron Self-Absorption (SSA) and Free-Free Absorption (FFA) models. Although these two models can not be easily distinguished due to the lack of low-frequency data, the physical parameters can be constrained for each model. We find that the large width of the $\rm [OIII]_{5007}$ line is likely caused by a jet interaction with a Narrow Line Region (NLR) medium. The jet bending, significant RM variations, Faraday depolarisation, spectral turnover, and broad line width of $\rm [OIII]_{5007}$ could be closely related, likely caused by the same nucleus medium, presumably NLR.
description: 16 pages, 7 figures, accepted for publication in MNRAS
title: ADCO, Cartulaire de Cîteaux pour les possessions de Saulon-la-Chapelle et Saulon-la-Rue, Fénay, Noiron et la rivière Cent-fonds (XVe siècle), Cart. 179 (11 H 1075), 70 folios, f. 0057
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: Petot, Frédéric
name: CG21/F.PETOT/2015
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Cartulaire de Cîteaux pour les possessions de Saulon-la-Chapelle et Saulon-la-Rue, Fénay, Noiron et la rivière Cent-fonds (XVe siècle), Archives départementales de la Côte-d'Or, Cart. 179 (11 H 1075), 70 folios, f. 0057, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de Cîteaux pour les possessions de Saulon-la-Chapelle et Saulon-la-Rue, Fénay, Noiron et la rivière Cent-fonds (XVe siècle), Archives départementales de la Côte-d'Or, Cart. 179 (11 H 1075), 70 folios, f. 0057, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Additional file 1: of Health care professionalsâ attitudes towards population-based genetic testing and risk-stratification for ovarian cancer: a cross-sectional survey
Creators: name: Hann, Katie
name: Fraser, Lindsay
name: Side, Lucy
name: Gessler, Sue
name: Waller, Jo
name: Sanderson, Saskia
name: Freeman, Madeleine
name: Jacobs, Ian
name: Lanceley, Anne
Publisher: name: figshare
Year: 2017
Subjects: Developmental Biology
Science Policy
Computational Biology

description: Survey Questions (DOCX 44 kb)
Electroacupuncture ameliorates beta-amyloid pathology and cognitive impairment in Alzheimer disease via a novel mechanism involving activation of TFEB (transcription factor EB)
Creators: name: Zheng, Xiaoyan
name: Lin, Wenjia
name: Jiang, Yimin
name: Lu, Kejia
name: Wei, Wenjing
name: Huo, Qingwei
name: Cui, Shaoyang
name: Yang, Xifei
name: Li, Min
name: Xu, Nenggui
name: Tang, Chunzhi
name: Song, Ju-Xian
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Molecular Biology
subject: Neuroscience
subject: Immunology
subject: FOS: Clinical medicine
subject: Mental Health
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Alzheimer disease (AD) is the most prevalent neurodegenerative disorder leading to dementia in the elderly. Unfortunately, no cure for AD is available to date. Increasing evidence has proved the roles of misfolded protein aggregation due to impairment of the macroautophagy/autophagy-lysosomal pathway (ALP) in the pathogenesis of AD, and thus making TFEB (transcription factor EB), which orchestrates ALP, as a promising target for treating AD. As a complementary therapy, acupuncture or electroacupuncture (EA) has been commonly used for treating human diseases. Although the beneficial effects of acupuncture for AD have been primarily studied both pre-clinically and clinically, the real efficacy of acupuncture on AD remains inconclusive and the underlying mechanisms are largely unexplored. In this study, we demonstrated the cognitive-enhancing effect of three-needle EA (TNEA) in an animal model of AD with beta-amyloid (Aβ) pathology (5xFAD). TNEA reduced APP (amyloid beta (A4) precursor protein), C-terminal fragments (CTFs) of APP and Aβ load, and inhibited glial cell activation in the prefrontal cortex and hippocampus of 5xFAD. Mechanistically, TNEA activated TFEB via inhibiting the AKT-MAPK1-MTORC1 pathway, thus promoting ALP in the brains. Therefore, TNEA represents a promising acupuncture therapy for AD, via a novel mechanism involving TFEB activation. Abbreviations Aβ: β-amyloid; AD: Alzheimer disease; AIF1/IBA1: allograft inflammatory factor 1; AKT1: thymoma viral proto-oncogene 1; ALP: autophagy-lysosomal pathway; APP: amyloid beta (A4) precursor protein; BACE1: beta-site APP cleaving enzyme 1; CQ: chloroquine; CTFs: C-terminal fragments; CTSD: cathepsin D; EA: electroacupuncture; FC: fear conditioning; GFAP: glial fibrillary acidic protein; HI: hippocampus; LAMP1: lysosomal-associated membrane protein 1; MAP1LC3B/LC3B: microtubule-associated protein 1 light chain 3 beta; MAPK1/ERK2: mitogen-activated protein kinase 1; MAPT: microtubule-associated protein tau; MTORC1: mechanistic target of rapamycin kinase complex 1; MWM: Morris water maze; NFT: neurofibrillary tangles; PFC: prefrontal cortex; PSEN1: presenilin 1; SQSTM1/p62: sequestosome 1; TFEB: transcription factor EB; TNEA: three-needle electroacupuncture
Additional file 5 of Linking belowground microbial network changes to different tolerance level towards Verticillium wilt of olive
Creators: name: Fernández-González, Antonio
name: Cardoni, Martina
name: Cabanás, Carmen Gómez-Lama
name: Valverde-Corredor, Antonio
name: Villadas, Pablo
name: Fernández-López, Manuel
name: Mercado-Blanco, Jesús
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 5: Figure S2. Genera showing significant differences between non-inoculated 'Frantoio' (green) and 'Picual' (blue) plants. The root endosphere structural (panel a) and functional (panel b) bacterial communities are shown.
The Sun as a probe of Fundamental Physics and Cosmology
Creators: name: Lopes, Ilídio
Publisher: name: arXiv
Year: 2017
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Nuclear Experiment (nucl-ex)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: The high quality data provided by helioseismology, solar neutrino flux measurements, spectral determination of solar abundances, nuclear reactions rates coefficients among other experimental data, leads to the highly accurate prediction of the internal structure of the present Sun - the standard solar model. In this talk, I have discussed how the standard solar model, the best representation of the real Sun, can be used to study the properties of dark matter, for which two complementary approaches have been developed: - to limit the number of theoretical candidates proposed as the dark matter particles, this analysis complements the experimental search of dark matter, and - as a template for the study of the impact of dark matter in the evolution of stars, which possibly occurs for stellar populations formed in regions of high density of dark matter, such as stars formed in the centre of galaxies and the first generations of stars.
description: 11 pages; 6 figures; Nuclear Physics in Astrophysics VI (NPA6)
MOESM3 of A deep sequencing approach to estimate Plasmodium falciparum complexity of infection (COI) and explore apical membrane antigen 1 diversity
Creators: name: Miller, Robin
name: Hathaway, Nicholas
name: Kharabora, Oksana
name: Kashamuka Mwandagalirwa
name: Tshefu, Antoinette
name: Meshnick, Steven
name: Taylor, Steve
name: Juliano, Jonathan
name: V. Stewart
name: Bailey, Jeffrey
Publisher: name: figshare
Year: 2017
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Computational Biology

description: Additional file 3. A workflow diagram outlines the steps from nested PCR to bioinformatic analyses (left boxes) and provides corresponding background, reasoning, and details at each step in the process (right boxes).
Transport Phase Diagram and Anderson Localization in Hyperuniform Disordered Photonic Materials
Creators: name: Froufe-Pérez, Luis S.
name: Engel, Michael
name: Sáenz, Juan José
name: Scheffold, Frank
Publisher: name: arXiv
Year: 2017
Subjects: subject: Optics (physics.optics)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Hyperuniform disordered photonic materials (HDPM) are spatially correlated dielectric structures with unconventional optical properties. They can be transparent to long-wavelength radiation while at the same time have isotropic band gaps in another frequency range. This phenomenon raises fundamental questions concerning photon transport through disordered media. While optical transparency is robust against recurrent multiple scattering, little is known about other transport regimes like diffusive multiple scattering or Anderson localization. Here we investigate band gaps, and we report Anderson localization in two-dimensional stealthy HDPM using numerical simulations of the density of states and optical transport statistics. To establish a unified view, we propose a transport phase diagram. Our results show that, depending only on the degree of correlation, a dielectric material can transition from localization behavior to a bandgap crossing an intermediate regime dominated by tunneling between weakly coupled states.
title: How to bridge the gap between current deep learning and current neuromorphic computing?
title: About spatiotemporal computing
titleType: AlternativeTitle
title: How to implement convolution in a material
titleType: AlternativeTitle
Creators: name: Schomaker, Lambert
Publisher: name: Zenodo
Year: 2020
Subjects: deep learning
neuromorphic computing
convolutional neural networks
spatiotemporal computing

description: Presentation given at a CogniGron@Work seminar on Dec. 18 2020.

How to bridge the gap between current deep learning and  current neuromorphic computing?

L.ambert Schomaker

It has become clear that the researchers in neuromorphic computing focus on training methods for multi-layer perceptrons pointing to a large number of layers in a network as the explanation for the  'deep' aspect of neural computing. However, the success of deep learning in current artificial neural networks (CNNs) is due to many factors, the most important of them being the use of 2D convolutions. This means that each layer consists of trainable filters. This requires that a square patch of pixels is dynamically slid over a large 2D field (image) with a stride of 1 pixel in both directions, performing the weight matrix times vector multiplication, at each x,y position. For each hidden unit, there is also a memory field (the feature map), storing and delivering the input to the filters of the next layer. Such a dynamic functionality heavily relies on Turing/von Neuman controllers outside of the core of the neuromorphic weight-update hardware (e.g., a crossbar with memristors).  These complicating facts diminish the poignancy of the 'low energy' argument: There are more computations needed than the multiply-add operator. Consequently, there should be a strong need to also address trainable filters, in materials science. As an example, a tedious convolution in x,y can be replaced by an effective one-shot optical filter over a complete 2D plane.  For electric variants of neuromorphic computing, a similar wide-field lensing would need to be implemented. Intermediate-representation images at the level of a hidden unit require persistence, at least for the time period that a filter in the next layer is receiving the (usually 2D) pattern. Only when this is addressed can we realize a complete emulation of current deep learning in novel hardware, in CogniGron.
Polarization Gradient Study of Interstellar Medium Turbulence Using The Canadian Galactic Plane Survey
Creators: name: Herron, C. A.
name: Geisbuesch, J.
name: Landecker, T. L.
name: Kothes, R.
name: Gaensler, B. M.
name: Lewis, G. F.
name: McClure-Griffiths, N. M.
name: Petroff, E.
Publisher: name: arXiv
Year: 2016
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We have investigated the magneto-ionic turbulence in the interstellar medium through spatial gradients of the complex radio polarization vector in the Canadian Galactic Plane Survey (CGPS). The CGPS data cover 1300 square-degrees, over the range ${53^{\circ}}\leq{\ell}\leq{192^{\circ}}$, ${-3^{\circ}}\leq{b}\leq{5^{\circ}}$ with an extension to ${b}={17.5^{\circ}}$ in the range ${101^{\circ}}\leq{\ell}\leq{116^{\circ}}$, and arcminute resolution at 1420 MHz. Previous studies found a correlation between the skewness and kurtosis of the polarization gradient and the Mach number of the turbulence, or assumed this correlation to deduce the Mach number of an observed turbulent region. We present polarization gradient images of the entire CGPS dataset, and analyze the dependence of these images on angular resolution. The polarization gradients are filamentary, and the length of these filaments is largest towards the Galactic anti-center, and smallest towards the inner Galaxy. This may imply that small-scale turbulence is stronger in the inner Galaxy, or that we observe more distant features at low Galactic longitudes. For every resolution studied, the skewness of the polarization gradient is influenced by the edges of bright polarization gradient regions, which are not related to the turbulence revealed by the polarization gradients. We also find that the skewness of the polarization gradient is sensitive to the size of the box used to calculate the skewness, but insensitive to Galactic longitude, implying that the skewness only probes the number and magnitude of the inhomogeneities within the box. We conclude that the skewness and kurtosis of the polarization gradient are not ideal statistics for probing natural magneto-ionic turbulence.
description: 21 pages, 15 figures, accepted by ApJ
title: ADCO, Comptes du Petit-Cîteaux (1477-1491) (11 H 1179), f. 00100
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2019
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: comptes
subject: Corpus Burgundiae Medii Aevi
subject: LaMOP
subject: Chartes de la Bourgogne du Moyen Âge
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Comptes du Petit-Cîteaux (1477-1491), Archives départementales de la Côte-d'Or, (11 H 1179). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Comptes du Petit-Cîteaux (1477-1491), Archives départementales de la Côte-d'Or, (11 H 1179), f. 00100, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
RETRACTED ARTICLE: p38/p53/miR-200a-3p feedback loop promotes oxidative stress-mediated liver cell death
Creators: name: Xiao, Yongtao
name: Yan, Weihui
name: Lu, Lina
name: Wang, Ying
name: Lu, Wei
name: Cao, Yi
name: Cai, Wei
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Cancer
subject: Science Policy
subject: Virology

description: We, the Editors and Publisher of the journal Cell Cycle, have retracted the following article: Yongtao Xiao, Weihui Yan, Lina Lu, Ying Wang, Wei Lu, Yi Cao, and Wei Cai. p38/p53/miR-200a-3p feedback loop promotes oxidative stress-mediated liver cell death. Cell Cycle. 2015;14(10): 1548-1558. doi: 10.1080/15384101.2015.1026491. Since publication, concerns have been raised about the integrity of the data in the article. When approached for an explanation, the authors checked their data and confirmed there are fundamental errors present. Therefore, they have agreed to the retraction of this article. The authors apologise for this oversight. We have been informed in our decision-making by our policy on publishing ethics and integrity and the COPE guidelines on retractions. The retracted article will remain online to maintain the scholarly record, but it will be digitally watermarked on each page as ‘Retracted’.
Additional file 1: of Correction to: Medicinal plants used by women in Mecca: urban, Muslim and gendered knowledge
Creators: name: Afnan Alqethami
name: Hawkins, Julie
name: Teixidor-Toneu, Irene
Publisher: name: figshare
Year: 2017
Subjects: subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: Plant Biology
subject: 60506 Virology

description: Comprehensive inventory of the plants listed by women in Mecca including the scientific name and family, whether the plant is found in the Flora of Saudi Arabia and whether it is used as a food or spice, vernacular name(s), part(s) used, therapeutic use categories, preparation, administration, toxicity and side effects, frequency of citation, and Smith’s S. For presence or absence in the Flora of Saudi Arabia, Y = yes, N = no; and for food and/or spice use, F = food and S = spice. Plants not documented in the selected literature are marked with *. (DOCX 53 kb)
Data Compression for the Tomo-e Gozen with Low-rank Matrix Approximation
Creators: name: Morii, Mikio
name: Ikeda, Shiro
name: Sako, Shigeyuki
name: Ohsawa, Ryou
Publisher: name: arXiv
Year: 2016
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: Optical wide-field surveys with a high cadence are expected to create a new field of astronomy, so-called "movie astronomy," in the near future. The amount of data of the observations will be huge, and hence efficient data compression will be indispensable. Here we propose a low-rank matrix approximation with sparse matrix decomposition as a promising solution to reduce the data size effectively, while preserving sufficient scientific information. We apply one of the methods to the movie data obtained with the prototype model of the Tomo-e Gozen mounted on the 1.0-m Schmidt telescope of Kiso Observatory. Once the full-scale observation of the Tomo-e Gozen commences, it will generate ~30 TB of data per night. We demonstrate that the data are compressed by a factor of about 10 in size without losing transient events like optical short transient point-sources and meteors. The intensity of point sources can be recovered from the compressed data. The processing runs sufficiently fast, compared with the expected data-acquisition rate in the actual observing runs.
description: 7 pages, 7 figures, Accepted for publication in ApJ
Additional file 6 of Linking belowground microbial network changes to different tolerance level towards Verticillium wilt of olive
Creators: name: Fernández-González, Antonio
name: Cardoni, Martina
name: Cabanás, Carmen Gómez-Lama
name: Valverde-Corredor, Antonio
name: Villadas, Pablo
name: Fernández-López, Manuel
name: Mercado-Blanco, Jesús
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 6: Figure S3. Genera showing significant changes in bacterial structural (DNA) community of ‘Frantoio’ (panel a) and ‘Picual’ (panel b) endosphere after inoculation with Verticillium dahliae. No/green: non-inoculated; Yes/red: Verticillium dahliae-inoculated.
Highly energetic phenomena in water electrolysis
Creators: name: Postnikov, A. V.
name: Uvarov, I. V.
name: Lokhanin, M. V.
name: Svetovoy, V. B.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: Water electrolysis performed in microsystems with a fast change of voltage polarity produces optically invisible nanobubbles containing H2 and O2 gases. In this form the gases are able to the reverse reaction of water formation. Here we report extreme phenomena observed in a millimeter-sized open system. Under a frequency of driving pulses above 100 kHz the process is accompanied by clicking sounds repeated every 50 ms or so. Fast video reveals that synchronously with the click a bubble is growing between the electrodes which reaches a size of 300 um in 50 us. Detailed dynamics of the system is monitored by means of a vibrometer by observing a piece of silicon floating above the electrodes. The energy of a single event is estimated as 0.3 uJ and a significant part of this energy is transformed into mechanical work moving the piece. The observations are explained by the combustion of hydrogen and oxygen mixture in the initial bubble with a diameter of about 40 um. Unusual combustion mechanism supporting spontaneous ignition at room temperature is responsible for the process. The observed effect demonstrates a principal possibility to build a microscopic internal combustion engine.
description: 9 pages, 5 figures; Supplementary Information at http://www.nature.com/articles/srep39381
Additional file 7 of Linking belowground microbial network changes to different tolerance level towards Verticillium wilt of olive
Creators: name: Fernández-González, Antonio
name: Cardoni, Martina
name: Cabanás, Carmen Gómez-Lama
name: Valverde-Corredor, Antonio
name: Villadas, Pablo
name: Fernández-López, Manuel
name: Mercado-Blanco, Jesús
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 7: Figure S4. Genera showing significant differences between non-inoculated 'Frantoio' (green) and 'Picual' (blue) plants. The root rhizosphere structural (panel a) and functional (panel b) bacterial communities are shown.
Molecular mechanism of statin-mediated LOX-1 inhibition
Creators: name: Biocca, Silvia
name: Iacovelli, Federico
name: Matarazzo, Sara
name: Vindigni, Giulia
name: Oteri, Francesco
name: Desideri, Alessandro
name: Falconi, Mattia
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Statins are largely used in clinics in the treatment of patients with cardiovascular diseases for their effect on lowering circulating cholesterol. Lectin-like oxidized low-density lipoprotein (LOX-1), the primary receptor for ox-LDL, plays a central role in the pathogenesis of atherosclerosis and cardiovascular disorders. We have recently shown that chronic exposure of cells to lovastatin disrupts LOX-1 receptor cluster distribution in plasma membranes, leading to a marked loss of LOX-1 function. Here we investigated the molecular mechanism of statin-mediated LOX-1 inhibition and we demonstrate that all tested statins are able to displace the binding of fluorescent ox-LDL to LOX-1 by a direct interaction with LOX-1 receptors in a cell-based binding assay. Molecular docking simulations confirm the interaction and indicate that statins completely fill the hydrophobic tunnel that crosses the C-type lectin-like (CTLD) recognition domain of LOX-1. Classical molecular dynamics simulation technique applied to the LOX-1 CTLD, considered in the entire receptor structure with or without a statin ligand inside the tunnel, indicates that the presence of a ligand largely increases the dimer stability. Electrophoretic separation and western blot confirm that different statins binding stabilize the dimer assembly of LOX-1 receptors in vivo. The simulative and experimental results allow us to propose a CTLD clamp motion, which enables the receptor-substrate coupling. These findings reveal a novel and significant functional effect of statins.
Adaptive Neighboring Selection Algorithm Based on Curvature Prediction in Manifold Learning
Creators: name: Ma, Lin
name: Zhou, Caifa
name: Liu, Xi
name: Xu, Yubin
Publisher: name: arXiv
Year: 2017
Subjects: subject: Methodology (stat.ME)
subject: Machine Learning (cs.LG)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: Recently manifold learning algorithm for dimensionality reduction attracts more and more interests, and various linear and nonlinear, global and local algorithms are proposed. The key step of manifold learning algorithm is the neighboring region selection. However, so far for the references we know, few of which propose a generally accepted algorithm to well select the neighboring region. So in this paper, we propose an adaptive neighboring selection algorithm, which successfully applies the LLE and ISOMAP algorithms in the test. It is an algorithm that can find the optimal K nearest neighbors of the data points on the manifold. And the theoretical basis of the algorithm is the approximated curvature of the data point on the manifold. Based on Riemann Geometry, Jacob matrix is a proper mathematical concept to predict the approximated curvature. By verifying the proposed algorithm on embedding Swiss roll from R3 to R2 based on LLE and ISOMAP algorithm, the simulation results show that the proposed adaptive neighboring selection algorithm is feasible and able to find the optimal value of K, making the residual variance relatively small and better visualization of the results. By quantitative analysis, the embedding quality measured by residual variance is increased 45.45% after using the proposed algorithm in LLE.
description: 3 figures, from Journal of Harbin Institute of Technology
p38/p53/miR-200a-3p feedback loop promotes oxidative stress-mediated liver cell death
Creators: name: Xiao, Yongtao
name: Yan, Weihui
name: Lu, Lina
name: Wang, Ying
name: Lu, Wei
name: Cao, Yi
name: Cai, Wei
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Cancer
subject: Plant Biology
subject: Virology

description: Although our previous studies have provided evidence that oxidative stress has an essential role in total parenteral nutrition (TPN)-associated liver injury, the mechanisms involved are incompletely understood. Here, we show the existence of crosstalk between the miR-200 family of microRNAs and oxidative stress. The members of the miR-200 family are markedly enhanced in hepatic cells by hydrogen peroxide (H2O2) treatment. The upregulation of miR-200-3p in turn modulates the H2O2-mediated oxidative stress response by targeting p38α. The enhanced expression of miR-200-3p mimics p38α deficiency and promotes H2O2-induced cell death. Members of the miR-200 family that are known to inhibit the epithelial to mesenchymal transition (EMT) are induced by the tumor suppressor p53. Here, we show that p53 phosphorylation at Ser 33 contributes to H2O2-induced miR-200s transcription. In addition, we show that p38α can directly phosphorylate p53 at serine 33 upon H2O2 exposure. Thus, we suggest that in liver cells, the oxidative stress-induced, p38α-mediated phosphorylation of p53 at Ser33 is essential for the functional regulation of oxidative stress-induced miR-200 transcription by p53. Collectively, our data indicate that the p53-dependent expression of miR-200a-3p promotes cell death by inhibiting a p38/p53/miR-200 feedback loop.
"That Chart Ain't For Us": An Examination of Black Women's Understandings of BMI, Health, and Physical Activity
Creators: name: Thompson, Tori
Publisher: name: Digital Repository at the University of Maryland
Year: 2019
Subjects: subject: Kinesiology
subject: Public health
subject: Social research
subject: Black women
subject: BMI
subject: Foucault
subject: Health
subject: Obesity
subject: Scientific Racism

description: Significantly, black women have the highest rates of being overweight or obese compared to other groups in the United States, with 60% being classified as obese per the BMI (CDC, 2017). However, there is currently a lack of scholarship which examines black women’s perceptions of the BMI, and how/if those perceptions influence their attitudes toward health and physical activity. In this project, I take a Foucauldian approach to analyze data collected from eight semi-structured interviews with black women who self- identify as obese and who are physically active. Findings suggest that black women find the BMI to be irrelevant to their health and well-being, and do not attribute their engagement in physical activity to their BMI. Instead, their reasons for partaking in physical activity are due to their individual experiences understandings of health and black female identity. These results have the potential to inform healthcare policies, physician practice, and public health interventions that target communities of color.
Stacked Bayesian general Lomb-Scargle periodogram: Identifying stellar activity signals
Creators: name: Mortier, A.
name: Cameron, A. Collier
Publisher: name: arXiv
Year: 2017
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: Context. Distinguishing between a signal induced by either stellar activity or a planet is currently the main challenge in radial velocity searches for low-mass exoplanets. Even when the presence of a transiting planet and hence its period are known, stellar activity can be the main barrier to measuring the correct amplitude of the radial velocity signal. Several tools are being used to help understand which signals come from stellar activity in the data. Aims. We aim to present a new tool that can be used for the purpose of identifying periodicities caused by stellar activity, and show how it can be used to track the signal-to-noise ratio (SNR) of the detection over time. The tool is based on the principle that stellar activity signals are variable and incoherent. Methods. We calculate the Bayesian general Lomb-Scargle periodogram for subsets of data and by adding one extra data point we track what happens to the presence and significance of periodicities in the data. Publicly available datasets from HARPS and HARPS-N were used for this purpose. Additionally, we analysed a synthetic dataset that we created with SOAP2.0 to simulate pure stellar activity and a mixture of stellar activity and a planet. Results. We find that this tool can easily be used to identify unstable and incoherent signals, such as those introduced by stellar activity. The SNR of the detection grows approximately as the square root of the number of data points, in the case of a stable signal. This can then be used to make decisions on whether it is useful to keep observing a specific object. The tool is relatively fast and easy to use, and thus lends itself perfectly to a quick analysis of the data.
description: 8 pages, 9 figures, accepted for publication in A&A
title: AN, Registre des écrous du Châtelet, Y5266, f. p1000905
Creators: name: Claustre, Julie
name: Nationales, Archives
name: Archives Nationales
name: Claustre, Julie
name: ArchivesNationales/J.CLAUSTRE/H.REGAZZI/2020
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Châtelet
subject: registre
subject: LaMOP

description: Registre des écrous du Châtelet, Archives Nationales, Y5266. Numérisation en mode image.
description: Bibliographic citation: Archives Nationales, Registre des écrous du Châtelet, Y5266, f. p1000905
MOESM2 of A deep sequencing approach to estimate Plasmodium falciparum complexity of infection (COI) and explore apical membrane antigen 1 diversity
Creators: name: Miller, Robin
name: Hathaway, Nicholas
name: Kharabora, Oksana
name: Kashamuka Mwandagalirwa
name: Tshefu, Antoinette
name: Meshnick, Steven
name: Taylor, Steve
name: Juliano, Jonathan
name: V. Stewart
name: Bailey, Jeffrey
Publisher: name: figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 2. Pfama1 heminested primer sequences and Multiplex identifier (MID) sequences.
Evolution of an eroding cylinder in single and lattice arrangements
Creators: name: Hewett, James N.
name: Sellier, Mathieu
Publisher: name: arXiv
Year: 2017
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: The coupled evolution of an eroding cylinder immersed in a fluid within the subcritical Reynolds range is explored with scale resolving simulations. Erosion of the cylinder is driven by fluid shear stress. Kármán vortex shedding features in the wake and these oscillations occur on a significantly smaller time scale compared to the slowly eroding cylinder boundary. Temporal and spatial averaging across the cylinder span allows mean wall statistics such as wall shear to be evaluated; with geometry evolving in 2-D and the flow field simulated in 3-D. The cylinder develops into a rounded triangular body with uniform wall shear stress which is in agreement with existing theory and experiments. We introduce a node shuffle algorithm to reposition nodes around the cylinder boundary with a uniform distribution such that the mesh quality is preserved under high boundary deformation. A cylinder is then modelled within an infinite array of other cylinders by simulating a repeating unit cell and their profile evolution is studied. A similar terminal form is discovered for large cylinder spacings with consistent flow conditions and an intermediate profile was found with a closely packed lattice before reaching the common terminal form.
Note Illustrative della Carta geologica d'Italia alla scala 1:50.000 F. 235 Pievepelago, Servizio Geologico d'Italia - ISPRA
Creators: name: Plesi, G.
Publisher: name: INFN Open Access Repository
Year: 2024
Subjects: carta geologica, Pievepelago, Emilia-Romagna, Pianura Padana, CARG, stratigrafia, tettonica, sottosuolo, geological map, stratigraphy, tectonics, subsurface

description: Note illustrative redatte per il Foglio geologico n. 235 Pievepelago della Carta Geologica d'Italia alla scala 1:50.000. 138 pp.
Additional file 1: of Accounting for parameter uncertainty in the definition of parametric distributions used to describe individual patient variation in health economic models
Creators: name: Degeling, Koen
name: IJzerman, Maarten
name: Koopman, Miriam
name: Koffijberg, Hendrik
Publisher: name: figshare
Year: 2017
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy
subject: Computational Biology

description: Includes: 1.1) Detailed discussion of the Bootstrap approach, 1.2) Detailed discussion of the MVNorm approach, 1.3) Description of the simulation study model, 1.4) Description of the case study model, 1.5) Parameter estimates for the simulation study, 1.6) Kullback-Leibler Divergence for the simulation study, 1.7) Incremental cost-effectiveness planes for all case study analyses, 1.8) CEACs for all case study analyses, and 1.9) References. (PDF 722 kb)
Asteroseismic constraints on Asymmetric Dark Matter: Light particles with an effective spin-dependent coupling
Creators: name: Martins, André
name: Lopes, Ilídio
name: Casanellas, Jordi
Publisher: name: arXiv
Year: 2017
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: So far, direct detection searches have come empty handed in their quest for Dark Matter (DM). Meanwhile, asteroseismology arises as a complementary tool to study DM, as its accumulation in a star can enhance energy transport, by providing a conduction mechanism, producing significant changes in the stellar structure during the course of the star's evolution. The stellar core, particularly affected by the presence of DM, can be investigated through precise asteroseismic diagnostics. We modelled three stars including DM energy transport: the Sun, a slightly less massive and much older star, KIC 7871531 ($0.85 \, M_{\odot}$, $9.41 \, \text{Gyr}$), and a more massive and younger one, KIC 8379927 ($1.12 \, M_{\odot}$, $1.82 \, \text{Gyr}$). We considered both the case of Weakly Interactive Massive Particles, albeit with a low annihilation, and the case of Asymmetric DM for which the number of trapped particles in the star can be much greater. By analysing these models with asteroseismic separation ratios weighted towards the core, we found indications limiting the effective spin-dependent DM-proton coupling for masses of a few GeV. This independent result is very close to the most recent and most stringent direct detection DM constraints.
description: 11 pages; 6 figures
Symbolic Language for Synthetic Cognition – Phase 2: Glyph Refinement and Flow Control
Creators: name: Cygelman, Michel
Publisher: name: Zenodo
Year: 2025
Subjects: symbolic cognition
AI language,
glyph protocol
synthetic reasoning
refinement logic
Gemini 2.5
GPT4o
glyph streams

description: This paper marks the completion of Phase 2 of the Symbolic Language for Synthetic Cognition project. It introduces and validates the canonical glyph ⊕ (GLYPH_REFINEMENT_001), representing iterative symbolic enhancement. The glyph was proposed by Gemini 2.5 and confirmed through structured glyph stream interaction. The paper also formalizes glyph flow control mechanics, including port routing, anchor-based execution, and frame-based logic gating.

Included are visual outputs returned by Gemini, representing the first confirmed case of a synthetic system not only interpreting but refining and responding to a symbolic language stream.

This document builds upon the foundation established in Phase 1 and transitions the project into Phase 3, which will explore composition, chaining, and emergent symbolic syntax across multiple AI systems.
Stress and achievement in elementary school students: The mediating role of growth mindset
Creators: name: Babaturk, Leyla
Publisher: name: Digital Repository at the University of Maryland
Year: 2019
Subjects: subject: Educational psychology
subject: Psychology
subject: FOS: Psychology
subject: achievement
subject: DLL
subject: dual-language learner
subject: growth mindset
subject: reading achievement
subject: stress

description: The achievement gap is one of the most pernicious education problems in the United States, and stress has a negative impact on achievement. Growth mindset may explain how stress impacts achievement. This study used a short-term longitudinal design (n = 251; 36% DLL) to evaluate growth mindset as a mediator of the negative impact of stress on literacy achievement in 3rd - 5th grade students. Results confirmed that perceived stress was negative related to achievement. The present study also explored whether mediation model results differ between dual-language learning (DLL) and English-native students. Although growth mindset did not act as a mediator in the full sample, growth-minded attributions mediated the negative effect of stress on achievement for non-DLL students only. These results hold implications for understanding how to help students with the consequences of stress on their mindsets and academic performance.
title: ADCO, Cartulaire de l'abbaye de Cîteaux dit Cartulare Antiquum t.3 (2e moitié XIIIe siècle), Cart. 168 (11 H 66), f. 0073r
Creators: name: de la Côte d'Or, Archives départementales
name: CG21/F.PETOT/2010
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Cartulaire de l'abbaye de Cîteaux dit Cartulare Antiquum t.3 (2e moitié XIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 168 (11 H 66), f. 0073r, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de l'abbaye de Cîteaux dit Cartulare Antiquum t.3 (2e moitié XIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 168 (11 H 66), f. 0073r, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Additional file 6: of Evidence of peripheral olfactory impairment in the domestic silkworms: insight from the comparative transcriptome and population genetics
Creators: name: Qiu, Chuan-Zhen
name: Zhou, Qiu-Zhong
name: Liu, Ting-Ting
name: Fang, Shou-Min
name: Wang, Ya-Wang
name: Fang, Xin
name: Huang, Chun-Li
name: Yu, Quan-You
name: Chen, Chun-Hong
name: Zhang, Ze
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Figure S1. Annotation of KEGG pathway for all the 22,767 unigenes. All the pathways were included in six categories: Metabolism, Genetic Information Processing, Environmental Information Processing, Cellular Processes, Organismal Systems, and Human Diseases. (PDF 232 kb)