cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Strong curvature singularities in quasispherical asymptotically de Sitter dust collapse
Creators: name: Goncalves, Sergio M. C. V.
Publisher: name: arXiv
Year: 2001
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We study the occurrence, visibility, and curvature strength of singularities in dust-containing Szekeres spacetimes (which possess no Killing vectors) with a positive cosmological constant. We find that such singularities can be locally naked, Tipler strong, and develop from a non-zero-measure set of regular initial data. When examined along timelike geodesics, the singularity's curvature strength is found to be independent of the initial data.
description: 16 pages, LaTeX, uses IOP package, 2 eps figures; accepted for publication in Class. Quantum Grav
Use of a novel camera trapping approach to measure small mammal responses to peatland restoration
Creators: name: Littlewood, Nick A.
name: Hancock, Mark H.
name: Newey, Scott
name: Shackelford, Gorm
name: Toney, Rose
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Original Article
Blanket bog
Plantation forestry
Rodent
Shrew
Trail camera
Vole

description: Funder: Rural and Environment Science and Analytical Services Division; doi: http://dx.doi.org/10.13039/100011310
description: Abstract: Small mammals, such as small rodents (Rodentia: Muroidea) and shrews (Insectivora: Soricidae), present particular challenges in camera trap surveys. Their size is often insufficient to trigger infra-red sensors, whilst resultant images may be of inadequate quality for species identification. The conventional survey method for small mammals, live-trapping, can be both labour-intensive and detrimental to animal welfare. Here, we describe a method for using camera traps for monitoring small mammals. We show that by attaching the camera trap to a baited tunnel, fixing a close-focus lens over the camera trap lens, and reducing the flash intensity, pictures or videos can be obtained of sufficient quality for identifying species. We demonstrate the use of the method by comparing occurrences of small mammals in a peatland landscape containing (i) plantation forestry (planted on drained former blanket bog), (ii) ex-forestry areas undergoing bog restoration, and (iii) unmodified blanket bog habitat. Rodents were detected only in forestry and restoration areas, whilst shrews were detected across all habitat. The odds of detecting small mammals were 7.6 times higher on camera traps set in plantation forestry than in unmodified bog, and 3.7 times higher on camera traps in restoration areas than in bog. When absolute abundance estimates are not required, and camera traps are available, this technique provides a low-cost survey method that is labour-efficient and has minimal animal welfare implications.
MOESM2 of Healthcare bricolage in Europeâ s superdiverse neighbourhoods: a mixed methods study
Creators: name: Phillimore, Jenny
name: Brand, Tilman
name: Bradby, Hannah
name: Padilla, Beatriz
Publisher: name: figshare
Year: 2019
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics

description: Additional file 2: Questionnaire.
ChIP-seq and RNA-seq for complex and low-abundance tree buds reveal chromatin and expression co-dynamics during sweet cherry bud dormancy
Creators: name: Vimont, Noémie
name: Quah, Fu Xiang
name: Schöepfer, David Guillaume
name: Roudier, François
name: Dirlewanger, Elisabeth
name: Wigge, Philip A.
name: Wenden, Bénédicte
name: Cortijo, Sandra
Publisher: name: Apollo - University of Cambridge Repository
Year: 2019
Subjects: Original Article
Epigenetics
Tree buds
ChIP-seq/chromatin Immunoprecipitation-sequencing
RNA-seq/RNA-sequencing
Prunus avium L.
Prunus persica L batch
Malus x domestica Borkh

description: Funder: CIFRE
description: Abstract: Chromatin immunoprecipitation-sequencing (ChIP-seq) is a robust technique to study interactions between proteins, such as histones or transcription factors and DNA. This technique in combination with RNA-sequencing (RNA-seq) is a powerful tool to better understand biological processes in eukaryotes. We developed a combined ChIP-seq and RNA-seq protocol for tree buds (Prunus avium L., Prunus persica L Batch, Malus x domestica Borkh.) that has also been successfully tested on Arabidopsis thaliana and Saccharomyces cerevisiae. Tree buds contain phenolic compounds that negatively interfere with ChIP and RNA extraction. In addition to solving this problem, our protocol is optimised to work on small amounts of material. Furthermore, one of the advantages of this protocol is that samples for ChIP-seq are cross-linked after flash freezing, making it possible to work on trees growing in the field and to perform ChIP-seq and RNA-seq on the same starting material. Focusing on dormant buds in sweet cherry, we explored the link between expression level and H3K4me3 enrichment for all genes, including a strong correlation between H3K4me3 enrichment at the DORMANCY-ASSOCIATED MADS-BOX 5 (PavDAM5) loci and its expression pattern. This protocol will allow analysis of chromatin and transcriptomic dynamics in tree buds, notably during its development and response to the environment.
Immunogenicity of fowl typhoid vaccine in layer chickens
Creators: name: Ferdous, J.
name: Khan, M.S.R
name: Begum, F.
name: Hassan, J.
name: Ferdous, J.
name: Khan, M.S.R
name: Begum, F.
name: Hassan, J.
Publisher: name: Unknown
Year: 2009
Subjects: Health Economics and Policy
Livestock Production/Industries
Risk and Uncertainty

description: The immunogenicity of available fowl typhoid vaccine was studied in layer chickens following usual and suggested schedule of vaccination. A total of 30 chickens were divided into three groups; group A (vaccinated following usual schedule of vaccination), B (vaccinated following suggested schedule of vaccination) and C (as control), each containing 10 layer chickens of Fayoumi breed. Chickens of group A and B were vaccinated with available fowl typhoid vaccine produced by the Governments laboratory at a dose rate of 0.5ml at each occasion through SC route, where 1st dose was administered at 42 days and 35 days of age, respectively, and 2nd dose at 72 days and 65 days of age, respectively. Blood samples were collected to obtain sera from each chicken at every 7 days interval up to 105 days post vaccination for determination of antibody titre following primary and secondary vaccination using microplate agglutination test. The highest mean antibody titre obtained from Group A was 460.8 than that of B was 435.2, respectively. Among the two groups, the highest mean antibody titre of 460.8 was obtained at 56 days post vaccination in group A following usual schedule of vaccination. It revealed that government supplied fowl typhoid vaccine induced higher level of antibody production in both usual and suggested schedule of vaccination.
SNoMaN, a Visual Analytic Tool for Spatial Social Network Mapping and Analysis
Creators: name: Jin, Sichen
name: Andris, Clio
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 440610
subject: Social geography
classificationCode: 460506
subject: Graph, social and multimedia data
classificationCode: 370403
subject: Geoscience data visualisation
classificationCode: 330301
subject: Data visualisation and computational (incl. parametric and generative) design
classificationCode: 460106
subject: Spatial data and applications

description: This repository hosts an interactive web tool accompanying the paper "SNoMaN: A Visual Analytic Tool for Spatial Social Network Mapping and Analysis". The tool can be accessed at https://snoman.herokuapp.com/. SNoMaN links network and geographical layouts, helping users conduct Spatial Social Network Analysis (SSNA) by interactively computing and visualizing spatial social network (SSN) metrics, describing spatial distributions, exploring associations, and detecting anomalies.Key features of the tool include:Community Detection: Run community detection algorithms, map network modules, and outline community spatial boundaries using convex hulls on a map.Route Factor Diagram: Compare network distances (e.g., shortest paths) with Euclidean distances between nodes, helping users identify disconnected neighbors or connected distant nodes.Interactive Scatterplots: Explore correlations between network centralities (e.g., network “power”) and geographic characteristics such as distance, centrality, or dispersion.Computing Spatial Social Network Metrics ON the fly: Compute and compare metrics like network density and spatial dispersion (measured by standard distance) for different groups. These metrics can be exported as CSV files along with the generated scatterplots.The tool’s visual and computational components are fully interactive. Users can use interactions such as drag and select to dynamically compute network metrics for specific subnetworks and focus on individual cases of interest. The tool includes preloaded example datasets, including a food-sharing network, a Mafia criminal association network, and a US flight network. These datasets can be accessed via the 'File' -> 'Load Sample' menu within the tool.A demonstration video is also included in this repository, showcasing SNoMaN's use in analyzing a spatial social network of the 1960s American Mafia. The video demonstrates SSNA methods such as visualizing spatial distributions, detecting and mapping network communities, and identifying locations of nodes with significant social roles.The source code of the tool is available at https://github.com/sichenjin/SSN. SNoMaN is implemented using D3.js, NetworkX, React.js, and Leaflet. For support, suggestions, or potential collaborations, please contact the corresponding author Sichen Jin of the paper.For more information about the project and workshops on spatial social networks, please visit https://sites.gatech.edu/snoman.
Phytoseius kaimosi El-Banhawy & Irungu
Creators: name: El-Banhawy, E. M.
name: Knapp, M.
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Mesostigmata
Phytoseiidae
Phytoseius
Phytoseius kaimosi

description: Phytoseius kaimosi El-Banhawy & Irungu
(Fig. 77)
 Phytoseius kaimosi El-Banhawy & Irungu, 2009: 135.
 Material examined. Holotype female, Kenya, coffee farm in Embu, Eastern Province, December 2006 (El-Banhawy).
 Female: Dorsal shield smooth 285 long, 120 wide, with a pair of notocephalic pores, near z5, and six pairs of pores, with a lateral incision at level of r3. Measurements of dorsal setae: j1 24, j3 58, j4, j5, j6, J2, 5–6, J5 10, z2 4, z3 23, z4, z5 4–5, Z4 75, Z5 67, s4 97, s6 70, r3 40, R1 16, JV5 52. Setae s4, s6, Z4, Z5 strongly serrated and arising from tubercles, r3 serrated, remaining setae short, minute. Peritrematal shield fused anteriorly with dorsal shield, reaching level of j1. Sternal shield smooth, distances between St I-St III 58, St II-St II 64, St IV on platelets. Genital shield 95 wide. Ventri-anal shield 108 long, 46 wide (L/W ratio 2.3: 1), with a pair of tiny pre-anal pores near margin and three pairs of pre-anal setae (JV1, JV2, ZV2). A pair of metapodal platelets, a thin longitudinal sigillar sclerite and three pairs of setae surrounding ventri-anal shield. Fixed digit of chelicera with three teeth, movable digit with two teeth. Spermatheca calyx very long and slender, 22 long, but flared near vesicle, atrium enlarged, 4 long. Macrosetae blunt, Sge IV 28, Sti IV 36, St IV 42; 37. Chaetotaxy: genu II 2, 2/0, 2/0, 1, genu III 1, 2/0, 2/0, 1.
description: Published as part of El-Banhawy, E. M. & Knapp, M., 2011, Mites of the family Phytoseiidae Berlese from Kenya (Acari: Mesostigmata) 2945, pp. 1-176 in Zootaxa 2945 (1) on page 48, DOI: 10.11646/zootaxa.2945.1.1, http://zenodo.org/record/5282557
Two new cycloartane triterpenoid glycosides from the rhizomes of Actaea vaginata
Creators: name: Zeng, Shunqin
name: Li, Xiangyuan
name: Zhao, Zixuan
name: Lin, Yan
name: Zhu, Yindi
name: Ma, Guoxu
name: Zhao, Xiaohong
name: Xu, Xudong
name: Wu, Meichun
name: Wu, Haifeng
name: Zou, Qiongyu
name: Li, Yongtao
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: Two new cycloartane triterpenoid glycosides, soulieoside V (1) and 15-deacetylbeesioside O (2), together with one known compound, beesioside J (3), were isolated from the ethanolic extract of the rhizomes of Actaea vaginata. Their structures were elucidated by spectroscopic methods and by comparison with data reported in the literature. All the compounds were tested for their cytotoxic activities against human cancer cell lines.
Design of a Simple Orthogonal Multiwavelet Filter by Matrix Spectral Factorization
Creators: name: Kolev, Vasil
name: Cooklev, Todor
name: Keinert, Fritz
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Computational Engineering, Finance, and Science (cs.CE)
subject: Numerical Analysis (math.NA)
subject: Systems and Control (eess.SY)
subject: FOS: Computer and information sciences
subject: FOS: Mathematics
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: B.7; C.5; E.4; G.1; I.4; I.5; I.6; J.7
subject: 47Axx, 42Cxx, 65Txx, 65Dxx, 11Cxx, 12Yxx, 13P15, 15BXX, 94Axx, 97H60, 97R20,

description: We consider the design of an orthogonal symmetric/antisymmetric multiwavelet from its matrix product filter by matrix spectral factorization (MSF). As a test problem, we construct a simple matrix product filter with desirable properties, and factor it using Bauer's method, which in this case can be done in closed form. The corresponding orthogonal multiwavelet function is derived using algebraic techniques which allow symmetry to be considered. This leads to the known orthogonal multiwavelet SA1, which can also be derived directly. We also give a lifting scheme for SA1, investigate the influence of the number of significant digits in the calculations, and show some numerical experiments.
description: This is a preprint of a paper whose final and definite form is published in Circuits, Systems, and Signal Processing,, Springer, https://link.springer.com/article/10.1007/s00034-019-01240-9, ISSN 0278-081X (print), ISSN 1531-5878 (Online)
Prospects of beekeeping in Bangladesh
Creators: name: Moniruzzaman, M.
name: Rahman, M.S
name: Moniruzzaman, M.
name: Rahman, M.S
Publisher: name: Unknown
Year: 2009
Subjects: Livestock Production/Industries
Production Economics
Productivity Analysis

description: The main focus of the study was to examine the scope of beekeeping in Bangladesh. The data were collected from beekeepers of Tangail and Gopalgonj districts, because this enterprise is working more in these areas than others in Bangladesh. Fifty-four beekeepers were selected randomly and they were interviewed for getting the necessary data to determine the costs and return of beekeeping and to assess the scope of beekeeping. Forty six percent of the total beekeepers had own land of 0.51 to 1.50 acres and 37 per cent of them were young beekeepers in the age group of 15-30 years. Most of the beekeepers took it as a main occupation. The benefit cost ratio of beekeeping was 1.59 which showed that this business was profitable. It will be a great source of employment creation for the rural poor people to reduce the poverty. There is a great prospect of beekeeping in Bangladesh on the basis of the socio-economic context of the country and some special features of the enterprise. There are some problems identified by the beekeepers and they have suggested some solutions also. Finally the authors have drawn some recommendations to expand beekeeping enterprise in Bangladesh.
A Fluctuation Probe of Disoriented Chiral Condensates
Creators: name: Mohanty, B.
name: Mahapatra, D. P.
name: Nayak, T. K.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Nuclear Experiment (nucl-ex)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We show that an event-by-event fluctuation of the ratio of neutral pions or resulting photons to charged pions can be used as an effective probe for the formation of disoriented chiral condensates. The fact that the neutral pion fraction produced in case of disoriented chiral condensate formation has a characteristic extended non gaussian shape, is shown to be the key factor which forms the basis of the present analysis.
description: 4 pages and 3 figures
MOESM1 of Efficacy of visceral fat estimation by dual bioelectrical impedance analysis in detecting cardiovascular risk factors in patients with type 2 diabetes
Creators: name: Omura-Ohata, Yoko
name: Son, Cheol
name: Makino, Hisashi
name: Koezuka, Ryo
name: Tochiya, Mayu
name: Tamanaha, Tamiko
name: Kishimoto, Ichiro
name: Hosoda, Kiminori
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Science Policy

description: Additional file 1: Figure S1. The correlation between the VFA-CT and VFA-BIA among the patients with BNPâ >â 100Â pg/mL.
The 1.6um Bump as a Photometric Redshift Indicator
Creators: name: Sawicki, Marcin
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: I describe the principle of using the 1.6um H- spectral feature as a photometric redshift indicator and demonstrate that the technique holds promise by successfully recovering the redshifts of a small sample of z=0-1 galaxies using only their infrared (JHKL) photometry. I then consider the applicability of the technique to the 3.6--8um SIRTF filter set and investigate the systematic errors that could arise in photometric redshifts from random photometric errors or from a mismatch between target galaxies and fitting templates in metallicity, star formation history, and amount of interstellar dust. It appears that SIRTF near-IR data alone should be sufficient to estimate redshift of most galaxies that are at z>~1.5 and are dominated by stellar populations older than >~20Myr. Galaxies whose photometric fits indicate them to be at lower redshifts, z_fit
description: AJ in press
Matrix Spectral Factorization for SA4 Multiwavelet
Creators: name: Kolev, Vasil
name: Cooklev, Todor
name: Keinert, Fritz
Publisher: name: arXiv
Year: 2019
Subjects: subject: Numerical Analysis (math.NA)
subject: Computational Engineering, Finance, and Science (cs.CE)
subject: Signal Processing (eess.SP)
subject: FOS: Mathematics
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: C.7; E.4; F.2; G.1; I.4; I.5; I.6
subject: 47Axx, 42Cxx, 65Txx, 11Cxx, 12Yxx, 13P25, 15BXX, 94Axx, 97HXX, 97R20,

description: In this paper, we investigate Bauer's method for the matrix spectral factorization of an r-channel matrix product filter which is a halfband autocorrelation matrix. We regularize the resulting matrix spectral factors by an averaging approach and by multiplication by a unitary matrix. This leads to the approximate and exact orthogonal SA4 multiscaling functions. We also find the corresponding orthogonal multiwavelet functions, based on the QR decomposition.
description: This is a preprint of a paper whose final and definite form is published in https://link.springer.com/article/10.1007/s11045-017-0520-x
Metal-insulator transition in the double perovskites
Creators: name: Aligia, A. A.
name: Petrone, P.
name: Sofo, J. O.
name: Alascio, B.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We construct an effective Hamiltonian for the motion of electrons among the transition metal ions of ordered double perovskites like Sr2FeMoO6. in which strong intra-atomic Coulomb repulsion U is present in only one of the inequivalent transition metal sites. Using a slave-boson formalism, we construct a phase diagram which describes a charge transfer transition between insulating and metallic behavior as the parameters of the model are changed. The parameters for Sr2FeMoO6 are estimated from first-principles calculations and a transition to the insulating state with negative pressure is obtained.
description: 5 pages, 3 figures, submitted to Phys. Rev. B
Inequality and economic growth in Bangladesh–a diversified evidence on Kuznets pattern `U` hypothesis
Creators: name: Islam, S.M.A
name: Islam, S.M.A
Publisher: name: Unknown
Year: 2009
Subjects: Public Economics
Resource /Energy Economics and Policy

description: The study of inequality and economic growth to the developing countries are now a days a comprehensive issue since the growth stimulate the standard of living to the poor people and accordingly reduce income inequality. The improvement of inequality and growth may reduce the social movement to the government and may keep the economic and social integrity amongst the different ethnic groups by efficient resource allocation and income redistribution in Bangladesh. The objective of this research is to assess long term relationship between inequality and growth in Bangladesh with a methodology of Kuznets pattern inverted U hypothesis first introduced by Simon Kuznets since 1955. The popular concept of Kuznets hypothesis suggests that as economic growth occurs, income inequality first increase and then decline after a certain turning point. The study of Kuznets hypothesis is popular to the international economic environment rather than domestic, especially to the developing countries where the per capita GDP is below the level of world average. This study found the evidence that the presumption of Kuznets hypothesis has satisfied in the economy of Bangladesh in national level. In low income countries, structural adjustment is necessary to satisfy the Kuznets hypothesis.
Strain-induced structure and oxygen transport interactions in epitaxial La 0.6 Sr 0.4 CoO 3− δ thin films
Creators: name: Ivanov, Yurii P.
name: Kubicek, Markus
name: Siebenhofer, Matthäus
name: Viernstein, Alexander
name: Hutter, Herbert
name: Fleig, Jürgen
name: Chuvilin, Andrey
name: Zhang, Zaoli
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article
/639/301/299/893
/639/301/357/53
article

description: Abstract: The possibility to control oxygen transport in one of the most promising solid oxide fuel cell cathode materials, La0.6Sr0.4CoO3−δ, by controlling lattice strain raises questions regarding the contribution of atomic scale effects. Here, high-resolution transmission electron microscopy revealed the different atomic structures in La0.6Sr0.4CoO3−δ thin films grown under tensile and compressive strain conditions. The atomic structure of the tensile-strained film indicated significant local concentration of the oxygen vacancies, with the average value of the oxygen non-stoichiometry being much larger than for the compressive-strained film. In addition to the vacancy concentration differences that are measured by isotope exchange depth profiling, significant vacancy ordering was found in tensile-strained films. This understanding might be useful for tuning the atomic structure of La0.6Sr0.4CoO3−δ thin films to optimize cathode performance.
Paraseiulini Wainstein
Creators: name: El-Banhawy, E. M.
name: Knapp, M.
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Mesostigmata
Phytoseiidae

description: Tribe Paraseiulini Wainstein   Type genus: Paraseiulus Muma, 1961.
description: Published as part of El-Banhawy, E. M. & Knapp, M., 2011, Mites of the family Phytoseiidae Berlese from Kenya (Acari: Mesostigmata) 2945, pp. 1-176 in Zootaxa 2945 (1) on page 49, DOI: 10.11646/zootaxa.2945.1.1, http://zenodo.org/record/5282557
PHILOSOPHICAL FOUNDATIONS OF THE INNOVATIVE (COMBINATORIAL) STYLE OF THINKING OF THE OUTSTANDING MODERN AMERICAN COMPOSER, PEDAGOG, PRODUCER, PAINTER, AUTHOR-PERFORMER, MULTI-INSTRUMENTALIST MUSICIAN, DRUMMER TRAVIS ORBIN
Creators: name: Komleva, A.
name: Orbin, T.
Publisher: name: Sciences of Europe
Year: 2022
Subjects: music
beat
aesthetics
philosophy
dominant
combinatorial
accentuation
innovation
artist
stylistic diversity
impact force
existential
empirical
absolute hearing
method
Orbin formula

description: This article conducts philosophical and historical research on the phenomenon of the musical art and culture of the USA in the XXI century. The various ways ofscientific discoveries and achievementsthat allowed American musicians of the XXI century to form their own special, original style of sound are investigated. The authors identify the philosophical, social and musical reasons that move and develop modern American musical culture and art. The genesis and aesthetics of the work of the American composer, musician, drummer Travis Orbin, as an outstanding personality of modern American heavy music (metal), is considered in detail. The authors reveal that, working in different styles and directions of modern music, Orbin is convincing to colleagues and listeners, professional in terms of possession of musical instruments and has extensive knowledge of music theory, as well as charismatic in terms of his creative personality — his playing style is unmistakably recognizable by the listener.
Checkpoint inhibition of origin firing prevents inappropriate replication outside of S-phase
Creators: name: Johnson, Mark C
name: Can, Geylani
name: Santos, Miguel Monteiro
name: Alexander, Diana
name: Zegerman, Philip
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Research Article
Chromosomes and Gene Expression
cell cycle
checkpoints
S-phase
replication
Rad53
genome stability
S. cerevisiae

description: Checkpoints maintain the order of cell cycle events during DNA damage or incomplete replication. How the checkpoint response is tailored to different phases of the cell cycle remains poorly understood. The S-phase checkpoint for example results in the slowing of replication, which in budding yeast occurs by Rad53-dependent inhibition of the initiation factors Sld3 and Dbf4. Despite this, we show here that Rad53 phosphorylates both of these substrates throughout the cell cycle at the same sites as in S-phase, suggesting roles for this pathway beyond S-phase. Indeed, we show that Rad53-dependent inhibition of Sld3 and Dbf4 limits re-replication in G2/M, preventing gene amplification. In addition, we show that inhibition of Sld3 and Dbf4 in G1 prevents premature initiation at all origins at the G1/S transition. This study redefines the scope of the ‘S-phase checkpoint’ with implications for understanding checkpoint function in cancers that lack cell cycle controls.
New insights into the photometric structure of Blue Compact Dwarf Galaxies from a deep Near-Infrared study
Creators: name: Noeske, K. G.
name: Papaderos, P.
name: Cairos, L. M.
name: Fricke, K. J.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present deep Near-Infrared (NIR) imaging of Blue Compact Dwarf Galaxies (BCDs), allowing for the first time to derive and systematize the NIR structural properties of their stellar low-surface brightness (LSB) host galaxies. Compared to optical data, NIR images, being less contamined by the extended stellar and ionized gas emission from the starburst, permit to study the LSB host galaxy closer to its center. We find that radial surface brightness profiles (SBPs) of the LSB hosts show at large radii a mostly exponential intensity distribution, in agreement with previous optical studies. At small to intermediate radii, however, the NIR data reveal an inwards flattening with respect to the outer exponential slope ("type V SBPs", Binggeli & Cameron 1991) in the LSB component of more than one half of the sample BCDs. This result may constitute an important observational constraint to the dynamics and evolution of BCDs. We apply a modified exponential fitting function (Papaderos et al. 1996a) to parametrize and systematically study type V profiles in BCDs. A Sersic law is found to be less suitable for studying the LSB component of BCDs, since it yields very uncertain solutions.
description: 4 pages, 6 figures; proceedings of "The evolution of galaxies III. From simple approaches to self-consistent models", Kiel (Germany), 2002; also available from http://www.uni-sw.gwdg.de/~knoeske/PUB_LIST/bcds_kiel02.ps.gz
Dorsal and ventral striatal dopamine D1 and D2 receptors differentially modulate distinct phases of serial visual reversal learning
Creators: name: Sala-Bayo, Júlia
name: Fiddian, Leanne
name: Nilsson, Simon R. O.
name: Hervig, Mona E.
name: McKenzie, Colin
name: Mareschi, Alexis
name: Boulos, Maria
name: Zhukovsky, Peter
name: Nicholson, Janet
name: Dalley, Jeffrey W.
name: Alsiö, Johan
name: Robbins, Trevor W.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article
/631/378/2649
/631/477
/692/699/476
/631/378/1595
article

description: Funder: RCUK | Biotechnology and Biological Sciences Research Council (BBSRC); doi: https://doi.org/10.13039/501100000268
description: Funder: No personal funding for this project
description: Funder: GlaxoSmithKline foundation (GSK); doi: https://doi.org/10.13039/501100002066
description: Funder: Shionogi (Shionogi & Co. Ltd.); doi: https://doi.org/10.13039/501100005612
description: Abstract: Impaired cognitive flexibility in visual reversal-learning tasks has been observed in a wide range of neurological and neuropsychiatric disorders. Although both human and animal studies have implicated striatal D2-like and D1-like receptors (D2R; D1R) in this form of flexibility, less is known about the contribution they make within distinct sub-regions of the striatum and the different phases of visual reversal learning. The present study investigated the involvement of D2R and D1R during the early (perseverative) phase of reversal learning as well as in the intermediate and late stages (new learning) after microinfusions of D2R and D1R antagonists into the nucleus accumbens core and shell (NAcC; NAcS), the anterior and posterior dorsomedial striatum (DMS) and the dorsolateral striatum (DLS) on a touchscreen visual serial reversal-learning task. Reversal learning was improved after dopamine receptor blockade in the nucleus accumbens; the D1R antagonist, SCH23390, in the NAcS and the D2R antagonist, raclopride, in the NAcC selectively reduced early, perseverative errors. In contrast, reversal learning was impaired by D2R antagonism, but not D1R antagonism, in the dorsal striatum: raclopride increased errors in the intermediate phase after DMS infusions, and increased errors across phases after DLS infusions. These findings indicate that D1R and D2R modulate different stages of reversal learning through effects localised to different sub-regions of the striatum. Thus, deficits in behavioral flexibility observed in disorders linked to dopamine perturbations may be attributable to specific D1R and D2R dysfunction in distinct striatal sub-regions.
Additional file 2 of Design preferences for global scale: a mixed-methods study of “glocalization” of an animated, video-based health communication intervention
Creators: name: Adam, Maya
name: Chase, Rachel P.
name: McMahon, Shannon A.
name: Kuhnert, Kira-Leigh
name: Johnston, Jamie
name: Ward, Victoria
name: Prober, Charles
name: Bärnighausen, Till
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Additional file 2. Interview Guide (used for the in-depth interviews in this study).
Computation of gravitational waves from inspiraling binary neutron stars in quasiequilibrium circular orbits : Formulation and calibration
Creators: name: Shibata, Masaru
name: Uryu, Koji
Publisher: name: arXiv
Year: 2001
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Gravitational waves from binary neutron stars in quasiequilibrium circular orbits are computed using an approximate method which we propose in this paper. In the first step of this method, we prepare general relativistic irrotational binary neutron stars in a quasiequilibrium circular orbit, neglecting gravitational waves. We adopt the so-called conformal flatness approximation for a three-metric to obtain the quasiequilibrium states in this paper. In the second step, we compute gravitational waves, solving linear perturbation equations in the background spacetime of the quasiequilibrium states. Comparing numerical results with post Newtonian waveforms and luminosity of gravitational waves from two point masses in circular orbits, we demonstrate that this method can produce accurate waveforms and luminosity of gravitational waves. It is shown that the effects of tidal deformation of neutron stars and strong general relativistic gravity modify the post Newtonian results for compact binary neutron stars in close orbits. We indicate that the magnitude of a systematic error in quasiequilibrium states associated with the conformal flatness approximation is fairly large for close and compact binary neutron stars. Several formulations for improving the accuracy of quasiequilibrium states are proposed.
description: 26 pages, to be published in PRD
The role of [ 68 Ga]Ga-DOTATATE PET/CT in wild-type KIT / PDGFRA gastrointestinal stromal tumours (GIST)
Creators: name: Aloj, Luigi
name: Giger, Olivier
name: Mendichovszky, Iosif A.
name: Challis, Ben G.
name: Ronel, Meytar
name: Harper, Ines
name: Cheow, Heok
name: Hoopen, Rogier Ten
name: Pitfield, Deborah
name: Gallagher, Ferdia A.
name: Attili, Bala
name: McLean, Mary
name: Jones, Robin L.
name: Dileo, Palma
name: Bulusu, Venkata Ramesh
name: Maher, Eamonn R.
name: Casey, Ruth T.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Original Research

description: Funder: GIST Support UK
description: Funder: NIHR Senior Investigator Award
description: Funder: European Research Council Advanced Researcher Award
description: Abstract: Background: [68 Ga]Ga-DOTATATE PET/CT is now recognised as the most sensitive functional imaging modality for the diagnosis of well-differentiated neuroendocrine tumours (NET) and can inform treatment with peptide receptor radionuclide therapy with [177Lu]Lu-DOTATATE. However, somatostatin receptor (SSTR) expression is not unique to NET, and therefore, [68 Ga]Ga-DOTATATE PET/CT may have oncological application in other tumours. Molecular profiling of gastrointestinal stromal tumours that lack activating somatic mutations in KIT or PDGFRA or so-called ‘wild-type’ GIST (wtGIST) has demonstrated that wtGIST and NET have overlapping molecular features and has encouraged exploration of shared therapeutic targets, due to a lack of effective therapies currently available for metastatic wtGIST. Aims: To investigate (i) the diagnostic role of [68 Ga]Ga-DOTATATE PET/CT; and, (ii) to investigate the potential of this imaging modality to guide treatment with [177Lu]Lu-DOTATATE in patients with wtGIST. Methods: [68 Ga]Ga-DOTATATE PET/CT was performed on 11 patients with confirmed or metastatic wtGIST and one patient with a history of wtGIST and a mediastinal mass suspicious for metastatic wtGIST, who was subsequently diagnosed with a metachronous mediastinal paraganglioma. Tumour expression of somatostatin receptor subtype 2 (SSTR2) using immunohistochemistry was performed on 54 tumour samples including samples from 8/12 (66.6%) patients who took part in the imaging study and 46 tumour samples from individuals not included in the imaging study. Results: [68 Ga]Ga-DOTATATE PET/CT imaging was negative, demonstrating that liver metastases had lower uptake than background liver for nine cases (9/12 cases, 75%) and heterogeneous uptake of somatostatin tracer was noted for two cases (16.6%) of wtGIST. However, [68 Ga]Ga-DOTATATE PET/CT demonstrated intense tracer uptake in a synchronous paraganglioma in one case and a metachronous paraganglioma in another case with wtGIST. Conclusions: Our data suggest that SSTR2 is not a diagnostic or therapeutic target in wtGIST. [68 Ga]Ga-DOTATATE PET/CT may have specific diagnostic utility in differentiating wtGIST from other primary tumours such as paraganglioma in patients with sporadic and hereditary forms of wtGIST.
RECEPTION OF MUKHTAR AUEZOV'S CREATIVITY IN EASTERN EUROPEAN COUNTRIES
Creators: name: Mashakova, A.
Publisher: name: Sciences of Europe
Year: 2022
Subjects: reception
Kazakh literature
novel
review
preface.

description: The article deals with the perception of the creative writings of the classic of Kazakh literature, the writer Mukhtar Auezov in Eastern European countries – Hungary, Romania, the Czech Republic, Slovakia. The process of translating his works into Bulgarian, Hungarian, Polish, Romanian, Czech, and Slovak has been presented. Prefaces in M.Auezov's books which were published in these countries have been considered; reviews in the press; reports at the International conferences. The assessment of M.Auezov's creativity was positive, and the enthusiastic reaction from Eastern European writers and literary critics prevailed.
Toward Understanding CB[7]-Based Supramolecular Diels-Alder Catalysis
Creators: name: Berta, Dénes
name: Szabó, István
name: Scherman, Oren A.
name: Rosta, Edina
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Chemistry
QM/MM
Diels-Alder (DA) chemistry
catalysis
confinement & solvent effect
quantum chemistry ab initio

description: Cucurbiturils (CBs) are robust and versatile macrocyclic compounds, often used as molecular hosts in complex supramolecular systems. In previous work, remarkable catalytic activity has been observed for asymmetric cycloadditions under very mild conditions. Herein, we investigate the nature of supramolecular catalysis using DFT calculations and QM/MM techniques. We discuss induced conformational changes, electrostatic shielding effects from the highly polar aqueous environment and cooperativity in hydrogen bonding of the substrates in explicit water using QM/MM simulation techniques. Our results show little specificity for the chosen molecules, suggesting an excellent opportunity to expand the scope for catalytic use of these supramolecular macrocyclic containers.
Systematics of mid-rapidity K-/pi ratio in heavy-ion collisions
Creators: name: Wang, Fuqiang
Publisher: name: arXiv
Year: 2002
Subjects: subject: Nuclear Experiment (nucl-ex)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: It is observed that K-/pi in A+A and possibly p+p and pbar+p collisions follows an interesting systematic in omega, the pion transverse energy per unit of rapidity and transverse overlap area. The systematics show a linear increase of K-/pi with omega in the AGS and SPS energy regime and a saturation at RHIC energy. The systematics indicate that omega might be the relevant variable underlying K-/pi. At high energy, the omega variable is related to the gluon saturation scale in high density QCD, and perhaps to the initial energy density in the Bjorken picture.
description: 4 pages, 3 figures. SQM-2001 proceedings
Scientific Software Developer Productivity Challenges from the Molecular Sciences
Creators: name: Windus, Theresa
name: Nash, Jessica
name: Richard, Ryan
Publisher: name: figshare
Year: 2021
Subjects: subject: Applied Computer Science
subject: Computer Software
subject: FOS: Computer and information sciences
subject: 80306 Open Software

description: Enabling developer productivity in a broad community, such as the molecular sciences (MS), is a complex, multi-dimensional challenge. If it was easy to solve, we would have done it by now! In this whitepaper, we address just a few of the issues that we see in our MS community and a few of the solutions that we are trying to implement.
Kuzinellus kariuki El-Banhawy & Knapp 2011, n. sp.
Creators: name: El-Banhawy, E. M.
name: Knapp, M.
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Mesostigmata
Phytoseiidae
Kuzinellus
Kuzinellus kariuki

description: Kuzinellus kariuki El-Banhawy & Knapp n. sp.
(Fig. 79)
 Material examined. Holotype female, Kenya, Nakuru National Park, altitude 1765 m May 5, 2006 (El-Banhawy). Paratypes, 7 females, Mt. Kenya, Chogoria gate, altitude 2985 m, July 16, 2004 (El-Banhawy).
 Female: Dorsal shield 335 long, 180 wide, reticulated, with seven pairs of pores. Measurements of dorsal setae: j1 30, j3 28, j4 15, j5 16, j6 18, J2 23, J5 9, z2 17, z3 23, z4 25, z5 16, z6 14, Z4 30, Z5 50, s4 23, s6 25, S2 29, S4 32, S5 26, r3 25, R1 23, JV5 40. Setae Z 5, JV5 knobbed, Z5, Z4 serrated, remaining setae smooth. Peritrematal shield fused anteriorly with dorsal shield, reaching level of j1. Sternal shield, distances between St I-St III 62, St II-St II 55, St III of shield, St IV on platelets. Genital shield 67 wide. Ventri-anal shield 122 long, 80 wide, with a pair of round pre-anal pores and four pairs of pre-anal setae (JV1, JV2, JV3, ZV2). Two pairs of metapodal platelets, two pairs of sigillar sclerites and four pairs of setae, surrounding ventri-anal shield. Fixed digit of chelicera with two teeth, movable digit with one tooth. Spermatheca calyx cup shaped, 12 long, 4 wide near atrium, 7 near vesicle, atrium small, major duct broad. Macrosetae knobbed or blunt, Sge IV 18, Sti IV 20, St IV 40. Chaetotaxy: genu II 2, 2 / 0, 2/0, 1, genu III 1, 2 /1, 2/0, 1.
 Remarks. This species is similar to K. eddiei (Ueckermann & Loots). The serrated seta Z4 and details of spermatheca separated these two species. The male is unknown.
description: Published as part of El-Banhawy, E. M. & Knapp, M., 2011, Mites of the family Phytoseiidae Berlese from Kenya (Acari: Mesostigmata) 2945, pp. 1-176 in Zootaxa 2945 (1) on pages 49-50, DOI: 10.11646/zootaxa.2945.1.1, http://zenodo.org/record/5282557
MOESM1 of Silencing of one copy of the translation initiation factor eIFiso4G in Japanese plum (Prunus salicina) impacts susceptibility to Plum pox virus (PPV) and small RNA production
Creators: name: Rubio, Julia
name: Sánchez, Evelyn
name: Tricon, David
name: Montes, Christian
name: Jean-Philippe Eyquard
name: Chague, Aurélie
name: Aguirre, Carlos
name: Prieto, Humberto
name: Decroocq, Véronique
Publisher: name: figshare
Year: 2019
Subjects: subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Additional file 1: Figure S1. DAS-ELISA of wild type and transgenic Japanese plum lines following inoculation with Plum Pox Virus (PPV) over three vegetative cycles. Values represent the mean optical density values of three to four replicates per transgenic line tested for PPV infection over 3 vegetative cycles. AG: ‘Angeleno’ transgenic lines; LA: ‘Larry Ann’ transgenic lines. Numbers starting with 73 were transformed with pH 12-PpeIFiso4G11; 74 with pH 12-PpeIFiso4G10 and 72 with pH 12-PpeIF4G. All plants were grafted on rootstocks infected with PPV-M except NI (non-infected) and the plants noted PPV-D (PPV-D8 and PPV-D RdF Rouge de Fournés isolates).
MOESM1 of Healthcare bricolage in Europeâ s superdiverse neighbourhoods: a mixed methods study
Creators: name: Phillimore, Jenny
name: Brand, Tilman
name: Bradby, Hannah
name: Padilla, Beatriz
Publisher: name: figshare
Year: 2019
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics

description: Additional file 1: Interview guide.
MOESM2 of Silencing of one copy of the translation initiation factor eIFiso4G in Japanese plum (Prunus salicina) impacts susceptibility to Plum pox virus (PPV) and small RNA production
Creators: name: Rubio, Julia
name: Sánchez, Evelyn
name: Tricon, David
name: Montes, Christian
name: Jean-Philippe Eyquard
name: Chague, Aurélie
name: Aguirre, Carlos
name: Prieto, Humberto
name: Decroocq, Véronique
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 2: Figure S2. Relative expression analysis of PpeIFiso4G10 (A), PpeIF4G (B) and PpeIF4E (C) in leaves of transgenic Japanese plum trees. Transcript levels were analyzed by qRT-PCR. All values were normalized to the TEFII reference gene and then compared to the wild type ‘Angeleno’ gene expression level. Error bars represent the standard deviation of two biological replicates each analyzed in triplicate. The standard deviation between replicates is indicated by vertical lines. Statistical analysis was performed using the Kruskal–Wallis rank sum test in R software v. 3.2.5. Transgenic and wild type Japanese plum lines labelled with the same letter are statistically identical (P value
Leupaxin Expression Is Dispensable for B Cell Immune Responses
Creators: name: Bonaud, Amélie
name: Clare, Simon
name: Bisio, Valeria
name: Sowerby, John M.
name: Yao, Shugang
name: Ostergaard, Hanne
name: Balabanian, Karl
name: Smith, Kenneth G. C.
name: Espéli, Marion
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: subject: Immunology
subject: FOS: Clinical medicine
subject: leupaxin
subject: B cells
subject: plasma cells
subject: cell activation
subject: humoral immune response

description: The generation of a potent humoral immune response by B cells relies on the integration of signals induced by the B cell receptor, toll-like receptors and both negative and positive co-receptors. Several reports also suggest that integrin signaling plays an important role in this process. How integrin signaling is regulated in B cells is however still partially understood. Integrin activity and function are controlled by several mechanisms including regulation by molecular adaptors of the paxillin family. In B cells, Leupaxin (Lpxn) is the most expressed member of the family and in vitro studies suggest that it could dampen BCR signaling. Here, we report that Lpxn expression is increased in germinal center B cells compared to naïve B cells. Moreover, Lpxn deficiency leads to decreased B cell differentiation into plasma cells in vitro. However, Lpxn seems dispensable for the generation of a potent B cell immune response in vivo. Altogether our results suggest that Lpxn is dispensable for T-dependent and T-independent B cell immune responses.