Gordonia didemni
Creators: name: Lee, Jae-Yun
name: Jeong, Yun-Seok
name: Kim, Pil Soo
name: Bae, Dong-Wook Hyun and Jin-Woo
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Bacteria
Actinobacteria
Actinobacteridae
Actinomycetales
Nocardiaceae
Gordonia
Gordonia didemni

description: Description of Gordonia didemni R33M6-1   
 Cells are Gram­stain­positive, non­flagellated and rod shaped. Colonies are circular, flat, entire and apricot colored on MA medium after 48 h incubation at 30℃. Cells are positive for alkaline phosphatase, leucine arylamidase, valine arylamidase, cystine arylamidase, acid phosphatase, naphthol­AS­BI­phosphohydrolase, α ­galactosidase, α ­glucosidase, β ­glucosidase (API ZYM) and D­glucose, L­arabinose, D­mannose, N ­acetyl­D­glucosamine, D­maltose, gluconate, adipate, citrate, salicin, D­melibiose, propionate, valerate, 3­hydroxy­butyrate, 4­hydroxy­benzoate, inositol, D­sucrose, acetate (API 20NE/ID 32GN). Utilize D­trehalose, D­cellobiose, gentiobiose, sucrose, D­turanose, N ­glucosamine, neuraminic acid, α ­D­glucose, D­mannose, D­fructose, 6­methyl­glucose, D­fucose, myo­inositol, glycerol, D­glucose, gelatin, L­glutamic acid, pectin, D­glucuronic acid, citric acid, α ­glutaric acid, L­malic acid, succinic acid, α ­butyric acid, β ­butyric acid, acetoacetic acid, propionic acid and acetic acid as sole carbon sources (Biolog GEN III).   
 Strain R33 M6­1 (= NIBRBAC000503080) was isolated from the gut of Korean striped bitterling (Acheilognathus yamatsutae) at Yeongwol, Gangwon Province, Korea. The DNA G + C content of the type strain is 71 mol %.   
  Description of Mycolicibacterium fortuitum subsp. acetamidolyticum R33M4    
 Cells are Gram­stain­positive, non­flagellated and rod shaped. Colonies are circular, flat and beige colored on MA medium after 48 h incubation at 30℃. Cells reduce nitrate to nitrite and are positive for β ­glucosidase, esterase (C4), esterase lipase (C8), leucine arylamidase, valine arylamidase, trypsin, acid phosphatase, naphthol­AS­BI­phosphohydrolase (API 20NE/ZYM). Assimilate D­glucose, L­arabinose, D­mannose, D­mannitol, gluconate, adipate, malate, propionate, valerate, 3­hydroxy­butyrate, L­proline, acetate (API 20NE/ID 32GN) and utilize α ­Dglucose, D­fructose, D­fructose, L­aspartic acid, L­serine, D­gluconic acid, D­glucuronic acid, glucuronamide, citric acid, L­malic acid, succinic acid, Tween40, β ­butyric acid, propionic acid and acetic acid as sole carbon sources (Biolog GEN III).   
 Strain R33 M4 (= NIBRBAC000503081) was isolated from the gut of Korean striped bitterling (Acheilognathus yamatsutae) at Yeongwol, Gangwon Province, Korea. The DNA G + C content of the type strain is 66 mol %.   
  Description of Yersinia kristensenii subsp. rochesterensis K11M4    
 Cells are Gram-stain-negative, non-flagellated and rod shaped. Colonies are circular, convex, entire and beige colored on MA medium after 48 h incubation at 10℃. Cells reduce nitrate to nitrite and are positive for β ­glucosidase, β ­galactosidase, alkaline phosphatase, leucine arylamidase, acid phosphatase, naphthol­AS­BI­phosphohydrolase, β ­galactosidase, α ­glucosidase, N ­acetyl­ β ­glucosaminidase (API 20NE/ZYM). Assimilate D­glucose, L­arabinose, D­mannose, D­mannitol, N ­acetyl­D­glucosamine, D­maltose, gluconate, salicin, L­fucose, D­sorbitol, L­histidine, 2­ketogluconate, 3­hydroxy­butyrate, L­proline, L­rhamnose, D­ribose, inositol, D­sucrose, acetate, lactate, L­alanine, 5­ketogluconate, glycogen (API 20NE/ ID 32GN) and utilize dextrin, D­maltose, D­trehalose, D-cellobiose, gentiobiose, sucrose, D-raffinose, D-melibiose, β ­D­glucoside, D­salicin, N ­glucosamine, β ­mannosamine, N ­galactosamine, α ­D­glucose, D­mannose, D­fructose, D­galactose, L­fucose, L­rhamnose, inosine, D­sorbitol, D­mannitol, myo­inositol, glycerol, D­glucose, D­fructose, D­serine, glycyl­L­proline, L­alanine, L­arginine, L­aspartic acid, L­glutamic acid, L­histidine, L­serine, pectin, galacturonic acid, galactonic lactone, D­gluconic acid, D­glucuronic acid, glucuronamide, mucic acid, methyl pyruvate, D­lactic acid, citric acid, D­malic acid, L­malic acid, succinic acid, Tween40, acetoacetic acid, acetic acid and formic acid as sole carbon sources (Biolog GEN III).   
 Strain K 11M4 (= NIBRBAC000503083) was isolated from the gut of oily bitterling (Tanakia koreensis) at Cheongju, Chungcheongbuk Province, Korea. The DNA G + C content of the type strain is 48 mol %.
description: Published as part of Lee, Jae-Yun, Jeong, Yun-Seok, Kim, Pil Soo & Bae, Dong-Wook Hyun and Jin-Woo, 2021, Isolation and identification of 18 unrecorded prokaryotic species from the intestinal tracts of aquatic animals in Korea, pp. 1-11 in Journal of Species Research 10 (1) on pages 6-8, DOI: 10.12651/JSR.2021.10.1.001, http://zenodo.org/record/8119987