Additional file 2: Figure S1. of Assessment of contemporary genetic diversity and inter-taxa/inter-region exchange of avian paramyxovirus serotype 1 in wild birds sampled in North America
Creators: name: Ramey, Andrew
name: Goraichuk, Iryna
name: Hicks, Joseph
name: Dimitrov, Kiril
name: Poulson, Rebecca
name: Stallknecht, David
name: Bahl, Justin
name: Afonso, Claudio
Publisher: name: Figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Maximum Likelihood phylogeny depicting the inferred relationship among fusion gene sequences for APMV-1 class I isolates available on The National Center for Biotechnology Information GenBank as of 26 August 2016 (n = 211). The tree with the highest log likelihood (−14761.8677) is shown. Bootstrap support values ≥ 60 are shown. The tree is drawn to scale, with branch lengths depicting the number of substitutions per site. All positions containing gaps and missing data were eliminated. There were a total of 1662 positions in the final dataset. Branch tips include sub-genotypes assigned to major clades meeting criteria described by Diel et al. (2012; U = unclassified), followed by the GenBank accession number, host name, country of isolation, strain designation and year of isolation (if available). Sequences generated for this study are indicated with asterisks (***). Figure S2. Maximum Likelihood phylogeny depicting the inferred relationship among fusion gene sequences for APMV-1 class II isolates available on The National Center for Biotechnology Information GenBank as of 26 August 2016 (n = 1272). The tree with the highest log likelihood (−82565.4161) is shown. Bootstrap support values &gt; 60 are shown. The tree is drawn to scale, with branch lengths depicting the number of substitutions per site. All positions containing gaps and missing data were eliminated. There were a total of 1644 positions in the final dataset. Branch tips include sub-genotypes assigned to major clades meeting criteria described by Diel et al. (2012; U = unclassified), followed by the GenBank accession number, host name, country of isolation, strain designation and year of isolation (if available). Sequences generated for this study are indicated with asterisks (***). Figure S3. Maximum Likelihood phylogenetic tree depicting the inferred genetic relationship among fusion gene sequences for 180 APMV-1 isolates originating from samples collected from wild birds in North America. Bootstrap support values for major clades are shown. Sequences generated for this study are indicated with asterisks (***). Taxonomic order of host (Anseriformes = square, Charadriiformes = triangle, Suliformes = circle, Pelecaniformes = star) and region of sample collection (Alaska = red, Canada = yellow, West = orange, Midwest = blue, Gulf Coast = black, East = green) are indicated. (PDF 1177 kb)