cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Auchenipterus osteomystax
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Auchenipteridae
Auchenipterus
Auchenipterus osteomystax

description: Auchenipterus osteomystax (Miranda-Ribeiro, 1918) Fig. 18 Body elongated; greatest body depth contained 4.0 to 5.9 times in SL; head length 4.5 to 4.8, anal-fin base length 2.2 to 2.5 in SL; snout length 2.3 to 2.6, horizontal orbital diameter 3.2 to 3.5, least interorbital width 2.0 to 2.7 in HL; and orbital diameter 1.7 to 2.3 in interorbital width. Mouth terminal; premaxilla and dentary with several rows of thin teeth. Dorsal fin with 7, pectoral fin with 12 or 13, pelvic fin with 13 or 14 and anal fin with 42-51 rays (Ferraris, Jr., Vari, 1999). Ground color greyish dorsally, whitish ventrally. Dorsal, pelvic and anal fins hyaline; pectoral and caudal fins with distal margins black (Graça, Pavanelli, 2007). Maximum standard length. 285.0 mm (Graça, Pavanelli, 2007). Distribution. Río de la Plata, rio Tocantins and lower rio Amazonas basins. Remarks. Auchenipterus osteomystax is a non-native species from the upper rio Paraná its occurrence can be associated with the filling of the Itaipu Reservoir and the consequent inundation of the Sete Quedas Falls.
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on page 62, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
description: {"references": ["Ferraris CJ, Jr., Vari RP. The South American catfish genus Auchenipterus Valenciennes, 1840 (Ostariophysi: Siluriformes: Auchenipteridae): monophyly and relationships, with a revisionary study. Zool J Linn Soc. 1999; 126 (4): 387 - 450.", "Pavanelli CS, Graca WJ, Zawadzki CH, Britski HA, Vidotti AP, Avelino GS, Verissimo S. Fishes from the Corumba Reservoir, Paranaiba River drainage, upper rio Parana basin, State of Goias, Brazil. Check List. 2007; 3 (1): 58 - 64."]}
Genotyping of Cannabis sativa and analysis of (E)-nerolidol/linalool synthase transcriptional regulators
Creators: name: Maddock, Savanna
Publisher: name: University of British Columbia
Year: 2023

description: Cannabis sativa (cannabis) is rich in phytochemicals, including the terpenoids (E)-nerolidol and linalool, which affect the fragrance and potential medicinal properties of cannabis products. The objective of the first project of this thesis was to identify candidate transcription factors for an (E)-nerolidol/linalool terpenoid synthase gene from cannabis. A promoter beta-glucuronidase (GUS) assay was used to determine if an intergenic fragment from upstream of the (E)-nerolidol/linalool terpenoid synthase locus could support transcription. This was followed by a yeast one-hybrid assay to identify proteins that bind to this intergenic region. A single candidate transcription factor, LOB domain-containing protein 37, was found to bind to the intergenic region. Many cannabis producers lack accurate knowledge of the genetic diversity represented in their germplasm collections. This information is useful in selecting accessions for breeding and further development. The second project in this thesis applied single nucleotide polymorphism (SNP) genotyping to a collection of 25 drug-type, 39 hemp-type and 14 landrace accessions. This method used a reduced representation genotype by sequencing approach (NanoGBS) and identified 91,478 (SNPs). Population structure analyses identified two distinct clusters within the collection, including uniquely divergent individuals. These SNPs have the potential for future use in genome-wide association studies, marker-assisted breeding, and identity preservation.
ENVRI-FAIR D4.5: Updated policy landscape in ENVRI domain
Creators: name: Best, Mairi
name: Glaves, Helen M.
name: Asmi, Ari
Publisher: name: Zenodo
Year: 2023
Subjects: ENVRI-FAIR
research infrastructures
data policies
FAIR data

description: This document provides an assessment of the progress from 2020-2023 in developing FAIR data policies within ENVRI-FAIR environmental research infrastructures. In particular, it is a comparison with D4.2 which provided the initial landscape survey is given. The text describes the progress made in advancing ENVRI research infrastructures towards FAIRness, and the diagrams provide ‘heat maps’ where the colour indicates the state. The conclusion is that much progress has been achieved, but – as always – there is more that could be done, with varying amounts to be done in the different RIs. It is of particular importance that progress on the ‘legal policies’ has been rapid and is almost completed for the RIs of ENVRI.
Additional file 3 of Structural stigma and its impact on healthcare for consumers with borderline personality disorder: protocol for a scoping review
Creators: name: Klein, Pauline
name: Fairweather, Alicia Kate
name: Lawn, Sharon
name: Stallman, Helen Margaret
name: Cammell, Paul
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: Science Policy

description: Additional file 3. Draft search strategy for PsycINFO database.
Parauchenipterus galeatus
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Auchenipteridae
Parauchenipterus
Parauchenipterus galeatus

description: Parauchenipterus galeatus (Linnaeus, 1766) Fig. 18 Body deep; greatest body depth contained 3.5 to 3.9 times in SL; head length 4.5 to 4.8, anal-fin base length 2.2 to 2.5 in SL; snout length 2.5 to 2.9, horizontal orbital diameter 4.8 to 5.2, least interorbital width 1.6 to 1.9 in HL. Mouth terminal with dentigerous tooth plates in both premaxilla and dentary. Dorsal fin with I,6, pectoral fin with I,7, pelvic fin with 7 or 8 and anal fin with 21-24 rays. Adipose fin present. Ground color pale yellow to orange with several dark-brown irregular blotches as well as fins (Graça, Pavanelli, 2007). Maximum standard length. 285.0 mm (Graça, Pavanelli, 2007). Distribution. Widespread in South America rivers.
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on page 62, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
description: {"references": ["Pavanelli CS, Graca WJ, Zawadzki CH, Britski HA, Vidotti AP, Avelino GS, Verissimo S. Fishes from the Corumba Reservoir, Paranaiba River drainage, upper rio Parana basin, State of Goias, Brazil. Check List. 2007; 3 (1): 58 - 64."]}
Tatia neivai
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Auchenipteridae
Tatia
Tatia neivai

description: Tatia neivai (Ihering, 1930) Fig. 18 Body elongated; greatest body depth contained 4.5 to 5.2 times in SL; head length 3.6 to 4.4 in SL; snout length 2.5 to 2.9, horizontal orbital diameter 4.8 to 5.2 and least interorbital width 1.7 to 2.0 in HL. Mouth terminal with dentigerous tooth plates in both premaxilla and dentary. Dorsal and pectoral fins with I,4 or 5, pelvic fin with 7 or 8 and anal fin with 7-11 rays. Ground color dark-brown with several light-beige horizontally elongated spots, as well as fins, especially unpaired fins (Graça, Pavanelli, 2007). Maximum standard length. 68.0 mm (Graça, Pavanelli, 2007). Distribution. Upper río Paraguay and upper rio Paraná basins.
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on page 62, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
description: {"references": ["Pavanelli CS, Graca WJ, Zawadzki CH, Britski HA, Vidotti AP, Avelino GS, Verissimo S. Fishes from the Corumba Reservoir, Paranaiba River drainage, upper rio Parana basin, State of Goias, Brazil. Check List. 2007; 3 (1): 58 - 64."]}
Additional file 1 of Effects of the Active Kids voucher program on children and adolescents’ physical activity: a natural experiment evaluating a state-wide intervention
Creators: name: Foley, Bridget C.
name: Owen, Katherine B.
name: Bauman, Adrian E.
name: Bellew, William
name: Reece, Lindsey J.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Science Policy
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Computational Biology

description: Additional file 1:. Active Kids evaluation survey question items
ENVRI-FAIR D4.6: Draft policy document for common service catalogue
Creators: name: Asmi, Ari
name: Jeffery, Keith
name: Glaves, Helen M.
Publisher: name: Zenodo
Year: 2023
Subjects: ENVRI-FAIR
research infrastructures
implementation of policy
service catalogue
policy framework

description: This document presents the move from a theoretical policy framework, derived from Workshop 1 and discussed at Workshop 2, towards a practical implementation of policy.  It starts with the analysis of key policy drivers (EOSC Rules of participation, FAIR principles and ENVRI-Hub initial documents) in the respect of organisational decisions (“Policy drivers”) needed from an ENVRI RI.  The document collects these main policy statements (i.e., the “core” of the policy documents) into a draft framework, including other implied policies derived from the core requirements. The document also includes considerations of differences between Policies, Practices (Guidelines) and Technologies (IT Implementation) in Research Infrastructure management and maintenance, as well as some common requirements for interoperable and documentable policy documents. To move from this position to a practical implementation, Workshop 3 demonstrated how we can create policies (and subsequently guidelines and IT implementation) starting from the policy statements but creating policy documents.  The policy documents of various RIs were compared, and the policy document template of EPOS, together with other examples, informed the discussion.  In parallel, a landscape analysis leading to D4.5 should provide a state-of-the-art view across the participating RIs, from which policies suitable for the ENVRI-Hub (to interoperate across ENVRI RIs and also with EOSC) and their congruency can be analysed.  Due to the delays with D4.5, this deliverable documents the path to draft policies for the ENVRI-Hub.  In Workshop 4 (which leads to D4.7) these results will be discussed and the move to the final ENVRI policies planned.
ENVRI-FAIR D4.6: Draft policy document for common service catalogue
Creators: name: Asmi, Ari
name: Jeffery, Keith
name: Glaves, Helen M.
Publisher: name: Zenodo
Year: 2023
Subjects: ENVRI-FAIR
research infrastructures
implementation of policy
service catalogue
policy framework

description: This document presents the move from a theoretical policy framework, derived from Workshop 1 and discussed at Workshop 2, towards a practical implementation of policy. It starts with the analysis of key policy drivers (EOSC Rules of participation, FAIR principles and ENVRI-Hub initial documents) in the respect of organisational decisions (“Policy drivers”) needed from an ENVRI RI. The document collects these main policy statements (i.e., the “core” of the policy documents) into a draft framework, including other implied policies derived from the core requirements. The document also includes considerations of differences between Policies, Practices (Guidelines) and Technologies (IT Implementation) in Research Infrastructure management and maintenance, as well as some common requirements for interoperable and documentable policy documents. To move from this position to a practical implementation, Workshop 3 demonstrated how we can create policies (and subsequently guidelines and IT implementation) starting from the policy statements but creating policy documents. The policy documents of various RIs were compared, and the policy document template of EPOS, together with other examples, informed the discussion. In parallel, a landscape analysis leading to D4.5 should provide a state-of-the-art view across the participating RIs, from which policies suitable for the ENVRI-Hub (to interoperate across ENVRI RIs and also with EOSC) and their congruency can be analysed. Due to the delays with D4.5, this deliverable documents the path to draft policies for the ENVRI-Hub. In Workshop 4 (which leads to D4.7) these results will be discussed and the move to the final ENVRI policies planned.
Numerical analysis for derivative-free optimization
Creators: name: Jarry-Bolduc, Gabriel
Publisher: name: University of British Columbia
Year: 2023

description: In many optimization problems, the objective function is available only as the output of a blackbox. In this context, derivative-free optimization (DFO) methods can be used to solve the optimization problem. Derivative-free optimization methods may be classified into two main categories: direct search methods and model-based methods. This thesis presents novel theory and algorithms in both categories. Model-based methods often approximate the gradient or the Hessian of the objective function. The properties of the gradient approximation technique called generalized simplex gradient are scrutinized. Second, two Hessian approximation techniques called generalized simplex Hessian (GSH) and generalized centered simplex Hessian (GCSH) are defined and analyzed. In particular, we investigate how to approximate partial Hessians, and minimize the number of function evaluations when employing the GSH/GCSH. A useful notion in direct search methods is that of positive spanning set. In this thesis, we present the first deterministic algorithm to compute the cosine measure of any finite positive spanning set. Then we investigate the structure of positive bases with maximal cosine measure. We focus on positive bases of intermediate sizes. Last, the main theoretical concepts discussed in this thesis are utilized in DFO algorithms. The GSH are employed in a derivative-free trust-region algorithm and positive bases with high cosine measure are employed in a direct search algorithm. We examine how the theoretical advancements made in this thesis translate to gains in efficiency in DFO algorithms.
Tezepelumab: First Approval
Creators: name: Hoy, Sheridan M.
Publisher: name: Adis Journals
Year: 2022
Subjects: subject: Medicine
subject: 110203 Respiratory Diseases
subject: FOS: Clinical medicine

description: DeclarationsFunding The preparation of this review was not supported by any external funding.

Authorship and Conflict of interest During the peer review process the manufacturer of the agent under review was offered an opportunity to comment on the article. Changes resulting from any comments received were made by the authors on the basis of scientific completeness and accuracy. S. M. Hoy is a salaried employee of Adis International Ltd/Springer Nature, and declares no relevant conflicts of interest. All authors contributed to the review and are responsible for the article content.
Ethics approval, Consent to participate, Consent to publish, Availability of data and material, Code availability Not applicable.
Additional information about this Adis Drug Review can be found here.

AbstractThymic stromal lymphopoietin (TSLP) is an epithelial cell-derived cytokine implicated in the pathogenesis of asthma. Tezepelumab (tezepelumab-ekko; TEZSPIRE™) is a first-in-class human IgG2λ monoclonal antibody that inhibits the action of TSLP. Administered subcutaneously, it is being developed by Amgen and AstraZeneca for the treatment of asthma, chronic obstructive pulmonary disease (COPD), chronic rhinosinusitis with nasal polyps (CRSwNP), chronic spontaneous urticaria and eosinophilic oesophagitis. Tezepelumab received its first approval on 17 December 2021 as an add-on maintenance treatment for patients aged ≥ 12 years with severe asthma in the USA; it is the only biologic approved for severe asthma with no phenotype (e.g. eosinophilic or allergic) or biomarker limitations. A regulatory assessment of tezepelumab for the treatment of asthma is currently underway in the EU and Japan. Tezepelumab received orphan drug designation for the treatment of eosinophilic oesophagitis in October 2021 in the USA, and is undergoing clinical development for the treatment of COPD, CRSwNP and chronic spontaneous urticaria. This article summarizes the milestones in the development of tezepelumab leading to this first approval for the add-on maintenance treatment of patients aged ≥ 12 years with severe asthma.

© Springer Nature Switzerland AG 2022
Automated processing of prostate-based Raman spectra
Creators: name: Brewer, Joan M.
Publisher: name: University of British Columbia
Year: 2023

description: Background. Raman spectroscopy (RS) is an optical method of determining samples’ molecular composition through inelastic light scattering. This work involves an investigation into the processing of Raman spectral data as it relates to prostate cancer. Raman data processing methods come with inherent issues, including user variability, inefficiency, and lack of consensus regarding method selection. This work hypothesizes that an automated algorithm for processing prostate-based Raman data could be developed, which would overcome these issues. Algorithm. The algorithm, called Automated Raman Processing (ARP), was developed in Matlab and R. The ARP pipeline includes discarding spectra with discontinuities, removing cosmic rays (CRs), background subtraction, wavenumber correction, and spectral selection, i.e., determining which spectra are of sufficient quality to retain for downstream biochemical analysis (which can also be performed with ARP). Results. Discarding spectra with discontinuities: There was 100% agreement between the author and ARP. CR removal: Among good quality spectra (those of sufficient quality to retain), 96% of CRs were successfully removed; those not removed were of very low intensity and therefore a minor or non-issue. Also among good spectra, 3 spectral peaks were erroneously identified as CRs and eroded. During post-processing, averaging across dozens or hundreds of spectra is performed, thus this is also considered a minor issue. Spectral selection: The author and algorithm disagreed on < 0.07% of spectra; in contrast, two users performing manual selection disagreed on > 12% of spectra. 430 of 576 spectra were classified as good, giving 74.7% data retention. Efficiency: Manual spectral processing can take up to three hours / day without use of ARP. Inclusion of the ARP algorithm reduces this processing time to ∼ 10 minutes. Generalization: ARP has been generalized for effective processing of mouse lung data in addition to prostate-based data. Conclusion. ARP is an automated method of processing data which is both efficient and effective. Future work will include further generalization to process additional data types, application in convolutional neural network development, and investigation into correlation between Raman and immune profiles.
Additional file 2 of Effects of the Active Kids voucher program on children and adolescents’ physical activity: a natural experiment evaluating a state-wide intervention
Creators: name: Foley, Bridget C.
name: Owen, Katherine B.
name: Bauman, Adrian E.
name: Bellew, William
name: Reece, Lindsey J.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Science Policy
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Computational Biology

description: Additional file 2:. Multivariable analysis for number of days doing 60 min physical activity
Additional file 1 of Longitudinal change in restricted and repetitive behaviors from 8-36 months
Creators: name: Sifre, Robin
name: Berry, Daniel
name: Wolff, Jason J.
name: Elison, Jed T.
Publisher: name: figshare
Year: 2021
Subjects: subject: Neuroscience
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1: Figure S1. Sample distribution (n=606) for total items endorsed (Mean=8.79, SD=6.2). Table S1. Median item-level responses (min=0, max=4). Each item was converted to a binary scale (0, 1) using its median split. These binarized scores were then used to calculate the proportion of samples endorsing a given item. Table S2. Linear Mixed Effects Model results testing the effect of Age, Cohort, and Sex on Repetitive Motor raw mean scores. Model 1=Baseline model; Model 2=Establishing functional form; Linear fixed and random effects of age. Model did not converge when covariates (Cohort and Sex) were included, and was not considered as a candidate model, so Model 2 was adopted as final model. Table S3. Linear Mixed Effects Model results testing the effect of Age, Cohort, and Sex on Self-directed raw mean scores. Model 1=Baseline model; Model 2=Establishing functional form; Linear fixed effects of age. Model 3=Assessing covariates. Model 4=Final model with significant covariate of Cohort included. Table S4. Linear Mixed Effects Model results testing the effect of Age, Cohort, and Sex on Higher-order raw mean scores. Model 1=Baseline model. Model 2=Adding covariates (initial model establishing functional form found no significant fixed or random effects of Age). Model 3=Final model selected after removing non-significant effects of Sex and Cohort.
Additional file 3 of Prevalence, risk factors, and interventions for chronic obstructive pulmonary disease in South Asia: a scoping review protocol
Creators: name: Rafiqul Islam
name: Md. Tarek Hossain
name: Nantu Chakma
name: Afroza Khanom
name: Mazumder, Tapas
name: Islam, Tauhidul
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: Additional file 3. Table S3: Proposed draft charting form
Additional file 1 of Prevalence, risk factors, and interventions for chronic obstructive pulmonary disease in South Asia: a scoping review protocol
Creators: name: Rafiqul Islam
name: Md. Tarek Hossain
name: Nantu Chakma
name: Afroza Khanom
name: Mazumder, Tapas
name: Islam, Tauhidul
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: Additional file 1. PRISMA-P 2015 checklist
Callichthys callichthys callichthys (Linnaeus 1758
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Callichthyidae
Callichthys
Callichthys callichthys

description: Callichthys callichthys (Linnaeus, 1758) Fig. 19 Body elongated; greatest depth contained 4.5 to 5.0 and caudal peduncle depth 6.5 to 6.7 times in SL; head length 4.3 to 4.5, predorsal distance 2.6 to 2.7 and maxillary-barbel length 3.9 to 4.1 in SL; snout length 2.2 to 2.4, horizontal orbital diameter 9.4 to 10.1 and least interorbital width 1.4 to 1.6 in HL. Mouth terminal. Lateral line with 4 pores on upper series of plates. Dorsolateral series with 26-29 and ventrolateral series with 24-27 plates. Dorsal fin with I,7 or 8, pectoral with I,6, pelvic and anal fins with 6 rays. Ground color pale brown to dark-grey. Dark-grey fins with black spots (Graça, Pavanelli, 2007). Maximum standard length. 150.0 mm (Graça, Pavanelli, 2007). Distribution. Widespread in South America rivers.
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on page 63, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
description: {"references": ["Pavanelli CS, Graca WJ, Zawadzki CH, Britski HA, Vidotti AP, Avelino GS, Verissimo S. Fishes from the Corumba Reservoir, Paranaiba River drainage, upper rio Parana basin, State of Goias, Brazil. Check List. 2007; 3 (1): 58 - 64."]}
Additional file 8 of Gut microbiota is associated with the effect of photoperiod on seasonal breeding in male Brandt’s voles (Lasiopodomys brandtii)
Creators: name: Zhu, Hanyi
name: Li, Guoliang
name: Liu, Jing
name: Xu, Xiaoming
name: Zhang, Zhibin
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 8: Table S3. Spearman correlations between ASVs and hypothalamic genes in the photoperiod experiment.
ENVRI-FAIR D4.7: Policies for common service catalogue, policy landscape in EOSC domain
Creators: name: Jeffery, Keith
name: Glaves, Helen M.
name: Best, Mairi
Publisher: name: Zenodo
Year: 2023
Subjects: ENVRI-FAIR
FAIR principles
policies
environmental research
research infrastructures
FAIR data
EOSC
policy workshop
ENVRI-Hub
catalogue fo services

description: This document presents the policies planned for the ENVRI-Hub service catalogue within the context of interoperation with EOSC and the FAIR principles. The ENVRI-Hub catalogue is supplied by the Research Infrastructures within ENVRI-FAIR (or more specifically their digital asset suppliers) and so it is necessary for the policies of the RIs to be sufficiently compatible to avoid problems of conflicting policies when accessing digital assets at the RIs from the ENVRI-Hub. The key policy drivers (EOSC Rules of participation, FAIR principles, and ENVRI-Hub initial documents) were documented in D4.6 where policy recommendations for the RIs were made, in order for their policies to be compatible with ENVRI-Hub and hence EOSC and FAIR. The next steps to create policies for the ENVRI-Hub were also documented in D4.6 following ENVRI-FAIR Policy workshop 4 where the approach was discussed. While ENVRI RIs are finalising their policies and their implementation through guidelines (best practice) and IT implementation (technology) this deliverable lays out the policies needed at ENVRI-Hub and the steps to realisation.
Deliverable 3.2. Report containing material property predictions to be used for validation of a computationally-based approach to extracting input-data for process modelling.
Creators: name: Dacid Linder
name: Jiayi  Yan
name: Megahed, Mustafa
Publisher: name: Zenodo
Year: 2021
Subjects: LMD simulation
Haynes 230
1.4848
High Entropy Alloy

description: The HIPERMAT project aims to develop new materials or material combinations for increased lifetime of beams and rings in a hot stamping furnace, which are exposed to elevated temperatures for prolonged times. To accelerate the development process, materials and process modelling is utilized to select and optimize materials composition and processing parameters. Process simulations are a key tool for efficient implementation of additive and hybrid manufacturing processes. These simulations rely on materials property data. However, the materials data required for reliable process simulations is rarely available for a novel combination of materials and processes. In this report we outline the modeling framework employed in HIPERMAT for property predictions based on microstructure, showing examples of Laser Metal Deposition (LMD) simulation of a Ni-based superalloy. This framework forms the basis for quantifying property variation within a material specification and uncertainties in process simulations. This in turn allows to evaluate new materials for targeted performance and/or optimizing material specification to minimize batch-to-batch variability, thereby accelerating the development process for new and improved ring and beam materials in the hot stamping furnace and addressing the needs set out in HIPERMAT. Implementation of new materials and processes in industrial production requires significant efforts beyond lab-scale prototyping and validation. Upscaling the production introduces additional process restrictions and variability, which needs to be understood and controlled to ensure consistent highquality products. Modelling and simulations can be used to significantly reduce the experimental efforts of the upscaling process.
Corydoras Lacepede 1803
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Callichthyidae
Corydoras

description: Corydoras 1. Body with a large black or dark-grey regular spot in the anterior region of the flank..................................... C. aeneus 1’. Body with six dark-brown blotches on mid-line of the flank................................................................. Corydoras sp.
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on page 63, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
Corydoras aeneus
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Callichthyidae
Corydoras
Corydoras aeneus

description: Corydoras aeneus (Gill, 1858) Fig. 19 Body deep and elliptical; greatest depth contained 2.0 to 2.5 and caudal peduncle depth 7.8 to 8.4 times in SL; head length 3.1 to 3.8, predorsal distance 2.1 to 2.3 and maxillary-barbel length 5.3 to 5.5 in SL; snout length 1.8 to 1.9, horizontal orbital diameter 3.6 to 4.2 and least interorbital width 1.6 to 2.3 in HL. Mouth inferior. Lateral line with 4-6 pores on upper series of plates. Dorsolateral series with 20-23 and ventrolateral series with 19-22 plates. Dorsal fin with I,7 or 8, pectoral with I,8-10, pelvic fin with 6 and anal fin with 6-8 rays. Ground color dark-grey dorsally and yellowish ventrally; large black or dargrey regular spot in anterior region of flank. Grey fins, without spots (Graça, Pavanelli, 2007). Maximum standard length. 52.0 mm (Graça, Pavanelli, 2007). Distribution. Drainages from Colombia to the río de la Plata basin.
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on page 63, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
description: {"references": ["Pavanelli CS, Graca WJ, Zawadzki CH, Britski HA, Vidotti AP, Avelino GS, Verissimo S. Fishes from the Corumba Reservoir, Paranaiba River drainage, upper rio Parana basin, State of Goias, Brazil. Check List. 2007; 3 (1): 58 - 64."]}
Additional file 4 of In vitro performance and in vivo fertility of antibiotic-free preserved boar semen stored at 5 °C
Creators: name: Jäkel, Helen
name: Scheinpflug, Kathi
name: Mühldorfer, Kristin
name: Gianluppi, Rafael
name: Lucca, Matheus Schardong
name: Mellagi, Ana Paula Gonçalves
name: Bortolozzo, Fernando Pandolfo
name: Waberski, Dagmar
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Physiology
subject: Sociology
subject: FOS: Sociology
subject: Cancer

description: Additional file 4: Table S4. Sperm motility and acrosome defects of semen pools (n = 6) used for insemination (experiment 2).
Security Practices in Agile Software Development: A Mapping Study
Creators: name: Selva-Mora, Alejandra
name: Quesada-López, Christian
Publisher: name: figshare
Year: 2025
Subjects: classificationCode: 461202
subject: Empirical software engineering
classificationCode: 460406
subject: Software and application security

description: Agile software development, widely embraced for its rapid response to organizational needs, faces challenges in seamlessly integrating security practices. Despite its success in delivering prioritized functionalities, there remain difficulties in meeting non-functional requirements, particularly security, making the alignment of security practices with agility a complex endeavor. This study will map 252 security practices identified from 35 primary studies, categorizing them into the Building Security In Maturity Model (BSIMM) and stages of the software development life cycle. Additionally, it identifies 38 benefits, emphasizing security awareness, implementation, and alignment with agility, alongside 95 challenges linked to knowledge gaps and complexity. The findings underscore ongoing efforts to integrate security practices in Agile environments, highlighting the importance of empirical evaluation and emphasizing the need to assess the actual benefits of proposed security practices in real-world Agile software development.
Additional file 1 of In vitro performance and in vivo fertility of antibiotic-free preserved boar semen stored at 5 °C
Creators: name: Jäkel, Helen
name: Scheinpflug, Kathi
name: Mühldorfer, Kristin
name: Gianluppi, Rafael
name: Lucca, Matheus Schardong
name: Mellagi, Ana Paula Gonçalves
name: Bortolozzo, Fernando Pandolfo
name: Waberski, Dagmar
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Physiology
subject: Sociology
subject: FOS: Sociology
subject: Cancer

description: Additional file 1: Table S1. Sublethal sperm damage in semen samples: Semen samples were extended in AndroStar® Premium and stored at 17 °C with antibiotics (17 °C w/AB; 0.25 g/L gentamicin sulphate) or at 5 °C without antibiotics (5 °C w/o AB): Distribution of viable (Yo-Pro-1 neg) spermatozoa (%; means ± SEM) with low (M540 negative) or high (M540 positive) membrane fluidity and intact (PNA negative) or defective (PNA positive) acrosome (n = 9 boars, experiment 1).
MPEC 2023-X247 : 2006 YM
Creators: name: Minor Planet Center Staff
Publisher: name: The Minor Planet Center
Year: 2023
Subjects: subject: Small Solar System bodies
valueUri: http://astrothesaurus.org/uat/1469

description: The Minor Planet Electronic Circulars contain information on unusual minor planets, routine data on comets and natural satellites, and occasional editorial announcements.  They are published on behalf of Division F of the International Astronomical Union by the Minor Planet Center, Smithsonian Astrophysical Observatory, Cambridge, MA 02138, U.S.A.
Ethnocultural pluralism and the International Baccalaureate Primary Years Programme
Creators: name: Jamal, Sameena Karim
Publisher: name: University of British Columbia
Year: 2023

description: The concept of international-mindedness (IM) is a key feature of all schools offering International Baccalaureate (IB) educational programmes. IM is acknowledged as an aim but realizing it in practice is a process fraught with tensions. This study explored one facet of IM: ethnocultural pluralism (an ethic of respect for ethnocultural diversity). Guided by Stuart Hall’s work on representation and Norman Fairclough’s dialectical-relational approach to Critical Discourse Analysis (CDA), I analyzed sections of the official IB website and 89 Unit Planners from three schools implementing the Primary Years Programme (PYP) in Africa, the Middle East, and North America, representing the documented pedagogical plans and praxis of teachers of Grades 1 to 5 at each of these schools for the 2018-2019 academic year. The findings of the study indicate that although the IB has made strong statements of commitment in relation to ethnocultural pluralism, its practices do not always reflect enactment of these commitments. The findings further indicate that although all IB schools share this commitment to nurturing IM, there is a great deal of variance in the ways in which this is manifested in schools’ Unit Planners. Additionally, the extent to which, and manners in which, particular ethnocultural groups are included in the Planners draws attention to multilayered issues of representation. The comparative analysis of teachers’ representations of their pedagogical practices, as self-documented in their Unit Planners, generated a continuum of praxis reflecting a range of manners in which teachers at IB PYP schools in diverse geopolitical contexts conceptualize and enact IM and, by extension, ethnocultural pluralism. The meso and macro level contexts and their influences on teacher praxis are unpacked in light of the theoretical and analytical frameworks of this study. The contributions of this study include: deep insights into the PYP; a broader framework for conceptualizing teachers’ approaches for IM and ethnocultural pluralism; concrete examples of praxis for ethnocultural pluralism, including specifically for each of Grades 1 to 5; contributions to literature in overlapping domains; detailed exemplification of analytical processes involved in CDA, including visualizations to guide budding analysts; and a bespoke Analytical Guide for critical analysis of discourses.
Additional file 3 of In vitro performance and in vivo fertility of antibiotic-free preserved boar semen stored at 5 °C
Creators: name: Jäkel, Helen
name: Scheinpflug, Kathi
name: Mühldorfer, Kristin
name: Gianluppi, Rafael
name: Lucca, Matheus Schardong
name: Mellagi, Ana Paula Gonçalves
name: Bortolozzo, Fernando Pandolfo
name: Waberski, Dagmar
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Physiology
subject: Sociology
subject: FOS: Sociology
subject: Cancer

description: Additional file 3: Table S3. Isolated bacteria species of potential concern for artificial insemination: Bacteria species were isolated from raw semen and split semen samples preserved in BTS with antibiotics (0.25 g/L gentamicin sulphate, BTS w/AB) at 17 °C or in AndroStar® Premium without antibiotics (APrem w/o AB) at 5 °C for 72 h (experiment 1).
Additional file 1 of Induction of ferroptosis in response to graphene quantum dots through mitochondrial oxidative stress in microglia
Creators: name: Wu, Tianshu
name: Liang, Xue
name: Liu, Xi
name: Li, Yimeng
name: Wang, Yutong
name: Kong, Lu
name: Tang, Meng
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Neuroscience
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Virology

description: Additional file 1.
Hoplosternum littorale
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Callichthyidae
Hoplosternum
Hoplosternum littorale

description: Hoplosternum littorale (Hancock, 1828) Fig. 19 Body elongated; greatest depth contained 2.8 to 3.5 and caudal peduncle depth 8.8 to 9.4 times in SL; head length 2.9 to 3.8, predorsal distance 2.0 to 2.3 and maxillary-barbel length 1.5 to 3.2 in SL; snout length 1.9 to 2.3, horizontal orbital diameter 4.7 to 7.0 and least interorbital width 1.5 to 1.8 in HL. Mouth terminal. Lateral line with 4-6 pores on upper series of plates. Dorsolateral series with 25-27 and ventrolateral series with 22-24 plates. Dorsal fin with I,7, pectoral with I,9 or 10, pelvic fin with 6 and anal fin with 6-8 rays. Ground color dark-grey, lighter ventrally. Dark-grey fins (Graça, Pavanelli, 2007). Maximum standard length. 220.0 mm (Graça, Pavanelli, 2007). Distribution. Widespread in South America rivers.
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on pages 63-64, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
description: {"references": ["Pavanelli CS, Graca WJ, Zawadzki CH, Britski HA, Vidotti AP, Avelino GS, Verissimo S. Fishes from the Corumba Reservoir, Paranaiba River drainage, upper rio Parana basin, State of Goias, Brazil. Check List. 2007; 3 (1): 58 - 64."]}
The federated PRACE AAI pilot
Creators: name: C. Padrin
name: S. Gorini
Publisher: name: Zenodo
Year: 2023
Subjects: White Paper
AAI
Federation

description: The increasing desire by researchers to have easy access to HPC services, and the objective to follow FAIR data access (Findable, Accessible, Interoperable, and Reusable), guided PRACE-6IP WP6 to identify common rules to provide resources in a more user-friendly way. The following white paper describes policies and architecture of an authentication and authorization infrastructure (AAI) agreed by PRACE-6IP partners. In 2019, PRACE-6IP WP6 was tasked to define a plan for more user-friendly and forward-looking services for the future. PRACE AAI was one of the results of this activity and a first pilot and a demo were released in May 2022 (section “Architecture and Pilot”). The aim was to provide user-friendly access to PRACE services. This document describes the agreed policies to release the service. Additionally, the document describes the policies about how to provide a trustable PRACE IdP (Identity Provider) to PRACE users to facilitate the access to non-PRACE services. The work has been done in collaboration with Fenix, and this document has been partially inspired by work done in the ICEI project, and by the AARC Blueprint Architecture.
Additional file 3 of Gut microbiota is associated with the effect of photoperiod on seasonal breeding in male Brandt’s voles (Lasiopodomys brandtii)
Creators: name: Zhu, Hanyi
name: Li, Guoliang
name: Liu, Jing
name: Xu, Xiaoming
name: Zhang, Zhibin
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3: Figure S3. Differences in body mass, food intake, and behavior patterns between the control groups and the fecal microbiota transplantation (FMT) groups.
ENVRI-FAIR D5.3: Demonstrator of service integration in EOSC and systems
Creators: name: Bailo, Daniele
name: Jeffery, Keith
name: Adamaki, Angeliki
Publisher: name: Zenodo
Year: 2023
Subjects: ENVRI-FAIR
ESFRI
ESFRI cluster
demonstrator
FAIR data
research infrastructures
environmental research
EOSC

description: This deliverable showcases the progress and demonstrators of services integration between the ESFRI Cluster of Environmental Research Infrastructures and the European Open Science Cloud. It highlights the successful onboarding of the ENVRI Catalogue of Services onto the EOSC Marketplace, improving visibility and accessibility. Ongoing discussions with OpenAIRE aim to enhance the discoverability of ENVRI digital assets within EOSC. The document emphasises the importance of harmonisation, interoperability, and collaboration in achieving seamless integration and maximising the impact of environmental research infrastructures.
Lepthoplosternum pectorale
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Callichthyidae
Lepthoplosternum
Lepthoplosternum pectorale

description: Lepthoplosternum pectorale (Boulenger, 1895) Fig. 19 Body elongated; greatest depth contained 3.1 to 3.6 and caudal peduncle depth 8.9 to 9.5 times in SL; head length 3.3 to 3.8, predorsal distance 2.0 to 2.3 and maxillary-barbel length 1.5 to 2.2 in SL; snout length 1.9 to 2.2, horizontal orbital diameter 4.7 to 5.7 and least interorbital width 1.4 to 1.7 in HL. Mouth terminal. Lateral line with 4-6 pores on upper series of plates. Dorsolateral series with 25-26 and ventrolateral series with 22-23 plates. Dorsal fin with I,7, pectoral with I,9 or 10, pelvic fin with 6 and anal fin with 8 rays. Ground color dark-grey to pale brown; several darkbrown spots on body. Dark-grey fins (Graça, Pavanelli, 2007). Maximum standard length. 140.0 mm (Graça, Pavanelli, 2007). Distribution. Río Paraguay basin and upper rio Paraná floodplain. Remarks. Lepthoplosternum pectorale is a non-native species from the upper rio Paraná basin, and its occurrence can be associated with the functioning of the Canal da Piracema, a fish ladder that connects the region downstream from the Itaipu Dam to the region upstream from the dam.
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on page 64, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
description: {"references": ["Pavanelli CS, Graca WJ, Zawadzki CH, Britski HA, Vidotti AP, Avelino GS, Verissimo S. Fishes from the Corumba Reservoir, Paranaiba River drainage, upper rio Parana basin, State of Goias, Brazil. Check List. 2007; 3 (1): 58 - 64."]}
Additional file 1 of Exploring wealth-related inequalities in maternal and child health coverage in Latin America and the Caribbean
Creators: name: Colomé-Hidalgo, Manuel
name: Campos, Juan Donado
name: Miguel, Ángel Gil De
Publisher: name: figshare
Year: 2021
Subjects: Medicine
Biotechnology
Science Policy

description: Additional file 1: Table S1. Mean coverage of inequality gaps in interventions by wealth quintile, LAC 2001–2016.
A coarse-grained Parametrisation of linear Alkanes
Creators: name: O.M. Roscioni
name: M. Ricci
name: S. Farr
Publisher: name: Zenodo
Year: 2023
Subjects: SHAPE
White Paper

description: The main goal of this project was to develop a computational workflow for calculating the vaporisation enthalpies of pure compounds. Specifically, we investigated the family of linear alkanes from C2 to C16 using the MOLC model, a coarse-grained force field developed by MaterialX and implemented in the open-source molecular dynamics code LAMMPS. The first task of this project was creating new software for calculating the intermolecular energy, while the second was to devise a robust parametrisation strategy yielding accurate thermochemical properties. The calculations showed that the Gay-Berne potential energy well 𝜀0 needs to be scaled to compensate for the superposition of ellipsoidal beads in the MOLC model of linear alkanes. This result represented an important technical advancement in developing the MOLC model and laid the basis for creating a thermodynamically and structurally accurate coarse-grained force field for lipids and surfactants.