cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Florisela: Digital edition
Creators: name: Leblanc Elina
Publisher: name: Zenodo
Year: 2024
Subjects: Spanish literature
Digital edition
XML-TEI

description: Digital edition of a Spanish pliego de cordel, published by the Andalusian printer José María Moreno (19th c.). It contains the XML-TEI file of the edition, as well as the files that led to this edition, i.e. the digital facsimiles (raw and retouched), and the transcription produced by the OCR tool Transkribus (PAGE-XML). This digital edition is a part of the research project Desenrollando el cordel / Untangling the cordel / Démêler le cordel (2020-2024), led by professor Constance Carta at the University of Geneva and supported by the philanthropic Sandoz-Monique de Meuron Family Foundation.
Raphaël Enthoven
Creators: name: Leibowitch, Jacques (1942-2020)
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020

description: 1 fichier (6 pages). Pièce jointe : extraits du chapitre III du livre de J. Leibowitch Pour en finir avec le sida.
Supporting information (Feiner) from Accumulation of transposable elements in Hox gene clusters during adaptive radiation of Anolis lizards
Creators: name: Feiner, Nathalie
Publisher: name: The Royal Society
Year: 2016
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences

description: Supporting information containing 7 supplementary figures and 5 supplementary tables.
title: Préface_Guide pratique de l'amateur électricien pour la construction de tous les appareils électriques
Creators: name: AmateurS
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020

description: Préface
description: ID_PARA_00713
Florisela: Digital edition
Creators: name: Leblanc Elina
Publisher: name: Zenodo
Year: 2021
Subjects: Spanish literature
Digital edition
XML-TEI

description: Digital edition of a Spanish pliego de cordel, published by the Andalusian printer José María Moreno (19th c.). It contains the XML-TEI file of the edition, as well as the files that led to this edition, i.e. the digital facsimiles (raw and retouched), and the transcription produced by the OCR tool Transkribus (PAGE-XML). This digital edition is a part of the research project Desenrollando el cordel / Untangling the cordel / Démêler le cordel (2020-2022), led by the professor Constance Carta at the University of Geneva and supported by the philanthropic Sandoz-Monique de Meuron Family Foundation.
Florisela: Digital edition
Creators: name: Leblanc Elina
Publisher: name: Zenodo
Year: 2022
Subjects: Spanish literature
Digital edition
XML-TEI

description: Digital edition of a Spanish pliego de cordel, published by the Andalusian printer José María Moreno (19th c.). It contains the XML-TEI file of the edition, as well as the files that led to this edition, i.e. the digital facsimiles (raw and retouched), and the transcription produced by the OCR tool Transkribus (PAGE-XML). This digital edition is a part of the research project Desenrollando el cordel / Untangling the cordel / Démêler le cordel (2020-2024), led by the professor Constance Carta at the University of Geneva and supported by the philanthropic Sandoz-Monique de Meuron Family Foundation.
Text S1: Details of geometric morphometric methods from The impact of gape on the performance of the skull in chisel-tooth digging and scratch digging mole-rats (Rodentia: Bathyergidae)
Creators: name: McIntosh, Andrew F.
name: Cox, Philip G.
Publisher: name: The Royal Society
Year: 2016
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 110601 Biomechanics
subject: FOS: Health sciences

description: The African mole-rats (Bathyergidae) are a family of rodents highly adapted for life underground. Previous research has shown that chisel-tooth digging mole-rats (which use their incisors to dig burrows) are clearly distinguishable from scratch diggers (which only use the forelimbs to tunnel) on the basis of morphology of the skull, and that the differences are linked to the production of high bite forces and wide gapes. We hypothesized that the skull of a chisel-tooth digging mole-rat would perform better at wider gapes than that of a scratch digging mole-rat during incisor biting. To test this hypothesis, we created finite-element models of the cranium of the scratch digging Bathyergus suillus and the chisel-tooth digging Fukomys mechowii, and loaded them to simulate incisor bites at different gapes. Muscle loads were scaled such that the ratio of force to surface area was the same in both models. We measured three performance variables: overall stress across the cranium, mechanical efficiency of biting and degree of deformation across the skull. The Fukomys model had a more efficient incisor bite at all gapes, despite having greater average stress across the skull. In addition, the Fukomys model deformed less at wider gapes, whereas the Bathyergus model deformed less at narrower gapes. These properties of the cranial morphology of Fukomys and Bathyergus are congruent with their respective chisel-tooth and scratch digging behaviours and, all other factors being equal, would enable the more efficient production of bite force at wider gapes in Fukomys. However, in vivo measurements of muscle forces and activation patterns are needed to fully understand the complex biomechanics of tooth digging.
Appendix S1 from Marker-dependent associations among oxidative stress, growth and survival during early life in a wild mammal
Creators: name: Christensen, Louise L.
name: Selman, Colin
name: Blount, Jonathan D.
name: Pilkington, Jill G.
name: Watt, Kathryn A.
name: Pemberton, Josephine M.
name: Reid, Jane M.
name: Nussy, Daniel H.
Publisher: name: The Royal Society
Year: 2016
Subjects: subject: Physiology
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology

description: Assay protocols for measures of oxidative stress
Kamenos et al supp mat 25_08_16.docx ( 355K ) from Coralline algae in a naturally acidified ecosystem persist by maintaining control of skeletal mineralogy and size
Creators: name: N. A. Kamenos
name: G. Perna
name: M. C. Gambi
name: F. Micheli
name: K. J. Kroeker
Publisher: name: The Royal Society
Year: 2016
Subjects: subject: Biochemistry
subject: Environmental Science
subject: Ecology
subject: FOS: Biological sciences

description: To understand the effects of ocean acidification (OA) on marine calcifiers, the trade-offs among different sublethal responses within individual species and the emergent effects of these trade-offs must be determined in an ecosystem setting. Crustose coralline algae (CCA) provide a model to test the ecological consequences of such sublethal effects as they are important in ecosystem functioning, service provision, carbon cycling and use dissolved inorganic carbon to calcify and photosynthesize. Settlement tiles were placed in ambient pH, low pH and extremely low pH conditions for 14 months at a natural CO2 vent. The size, magnesium (Mg) content and molecular-scale skeletal disorder of CCA patches were assessed at 3.5, 6.5 and 14 months from tile deployment. Despite reductions in their abundance in low pH, the largest CCA from ambient and low pH zones were of similar sizes and had similar Mg content and skeletal disorder. This suggests that the most resilient CCA in low pH did not trade-off skeletal structure to maintain growth. CCA that settled in the extremely low pH, however, were significantly smaller and exhibited altered skeletal mineralogy (high Mg calcite to gypsum (hydrated calcium sulfate)), although at present it is unclear if these mineralogical changes offered any fitness benefits in extreme low pH. This field assessment of biological effects of OA provides endpoint information needed to generate an ecosystem relevant understanding of calcifying system persistence.
Results from 95Mo(d,p) reaction measurements: informing the 96Mo level scheme with GODDESS and investigating the (d,p) reaction as a surrogate for the (n,n’) reaction with STARLiTeR
Creators: name: Garland, Heather Irene
Publisher: name: No Publisher Supplied
Year: 2024

description: Approximately half of the elements heavier than iron are formed through the rapid neutron capture process in explosions in the cosmos. Isotopes identified in neutron capture, (n,γ), sensitivity studies are often too short lived to create a solid target. By using Radioactive Ion Beam (RIB) facilities and indirect reaction methods, (n,γ) cross sections with high impact on predictions of r-process abundances can be constrained. The Surrogate Reaction Method (SRM) was validated by Ratkiewicz and colleagues for neutron transfer (d,p) reactions as a surrogate for (n,γ) reactions in normal kinematics. To further benchmark the use of (d,p) reactions as a surrogate for (n,γ) reactions on unstable isotopes, a 95Mo beam was impinged on C2D4 thin film targets. The subsequent (d,p) reaction products were measured using the particle-γ spectrometer GODDESS (Gammasphere ORRUBA: Dual Detectors for Experimental Structure Studies), where ORRUBA (Oak Ridge – Rutgers University Barrel Array), an array of silicon-strip detectors, is coupled to the gamma detector array Gammasphere.Challenges from the 2015 GODDESS commissioning campaign are discussed in regards to the limitations of the inverse kinematics 95Mo(d,p) reaction measurement data for use in a SRM analysis. Results from the γ-singles, γ − γ coincidences, and triple-γ coincidences are presented to inform the level scheme of 96Mo.The neutron induced (n,n’) reaction is important to the fields of astrophysics, nuclear forensics, and national security. It was recently determined that the (d,p) reaction could also be a potential surrogate reaction for the (n,n’) reaction. Data from the 95Mo(d,p) reaction measurement made with the (Silicon Telescope Array for Reactions with Livermore, Texas A&M University, Richmond (STARLiTeR) and performed with a deuteron beam at 12.4 MeV incident upon an enriched (98.6%) 95Mo target were analyzed working towards verifying the (d,p) reaction as a surrogate for the (n,n’) reaction. Constraining the 95Mo(n,n’) cross-section through the surrogate (d,p) reaction requires the analysis of proton-γ coincidences and γ-decay emission probabilities Ppγ of the 95Mo nucleus. Gamma-ray emission probabilities, Ppγ , for transitions in 95Mo from the (d,p) reaction populating states above the neutron separation energy of 96Mo are presented with a discussion of next steps.
title: Motivation, Anxiété et Avenir Professionnel : les élèves acteurs de leur futur
title: Motivation, Anxiété et Avenir Professionnel : les élèves acteurs de leur futur
titleType: AlternativeTitle
Creators: name: Margaroni, Sofia
name: Varone, Federica
Publisher: name: Unknown
Year: 0
Subjects: subject: transition école-métier
subject: motivation
subject: anxiété
subject: métiers
subject: blog
subject: enseignement spécialisé

description: La transition école-métier est un moment très important et délicat pour les jeunes que nous accompagnons. Cette transition l’est d’autant plus pour les jeunes à besoins particuliers qui se retrouvent face à un grand nombre d’obstacles (parcours déjà préétablis, préjugés, difficultés face à de nouveaux défis, etc…). Être enseignant pour ces jeunes signifie également prendre en charge une partie de leur accompagnement qui est lié à l’avenir professionnel. Dans la pratique quotidienne de notre activité professionnelle et, notamment, dans une classe d’un établissement spécialisé, nous avons observé un manque de motivation vis-à-vis du choix de l’avenir professionnel ainsi qu’une certaine anxiété liée à ce choix. Par conséquent, nous avons décidé d’agir en proposant une intervention dans cette classe. Tout d’abord, au travers de deux questionnaires, nous avons voulu mesurer le taux de motivation ainsi que le taux d’anxiété des élèves vis-à-vis de leur futur professionnel avant la mise en place du projet. Puis, au travers de la création d’un blog des métiers, nous sommes intervenues auprès de ces élèves pour essayer de comprendre si, suite à ce travail, le taux de motivation aurait pu augmenter et celui d’anxiété aurait pu baisser. Après quelques mois d’intervention, nous avons pu constater que la motivation n’a pas augmenté, mais diminué. On peut faire l’hypothèse que plusieurs facteurs externes sont rentrés en matière et ont causé cette baisse (manque de discipline dans le remplissage des questionnaires, manque d’autonomie des élèves vis-à-vis de la recherche d’informations, besoin continu de remise du cadre, etc…). Tous ces éléments ont contribué à ce que nos élèves n’aient pas réussi à se motiver davantage pour leur futur professionnel. Néanmoins, avec cette intervention, nous avons quand même réussi à générer une baisse du taux d’anxiété. Nos élèves restent, certes, relativement anxieux, mais par rapport au début de la recherche, ils ont quand même pu se rassurer vis-à-vis de certains aspects liés à leur avenir professionnel. Il nous reste à souligner que les résultats obtenus ne permettent pas une généralisation des conclusions (au vu du nombre restreint de sujets testés), néanmoins ils nous permettent de nous questionner sur d'éventuelles pistes à suivre afin d’améliorer la condition de nos élèves vis-à-vis de leur futur professionnel.
title: 01_1804
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
title: 1. Chant zäläsäña par Gäbäyähu Mola
Creators: name: Wion, Anaïs
name: Bolay, Anne
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020

description: L'entretien a lieu au bäherawi ṭäǧǧ bét de Wäldya, à la suite de celui donné par Adisé Mändäfro. De Gäbäyähu Mola on sait seulement qu'il a commencé à jouer du masinqo après avoir perdu l'usage d'une jambe suite à una ccident et ne pouvant alors plus travaillé la terre. Son grand-père était azmari, il a donc repris cette activité.
Table S1: Cranial landmarks used in geometric morphometric analysis. from The impact of gape on the performance of the skull in chisel-tooth digging and scratch digging mole-rats (Rodentia: Bathyergidae)
Creators: name: McIntosh, Andrew F.
name: Cox, Philip G.
Publisher: name: The Royal Society
Year: 2016
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 110601 Biomechanics
subject: FOS: Health sciences

description: The African mole-rats (Bathyergidae) are a family of rodents highly adapted for life underground. Previous research has shown that chisel-tooth digging mole-rats (which use their incisors to dig burrows) are clearly distinguishable from scratch diggers (which only use the forelimbs to tunnel) on the basis of morphology of the skull, and that the differences are linked to the production of high bite forces and wide gapes. We hypothesized that the skull of a chisel-tooth digging mole-rat would perform better at wider gapes than that of a scratch digging mole-rat during incisor biting. To test this hypothesis, we created finite-element models of the cranium of the scratch digging Bathyergus suillus and the chisel-tooth digging Fukomys mechowii, and loaded them to simulate incisor bites at different gapes. Muscle loads were scaled such that the ratio of force to surface area was the same in both models. We measured three performance variables: overall stress across the cranium, mechanical efficiency of biting and degree of deformation across the skull. The Fukomys model had a more efficient incisor bite at all gapes, despite having greater average stress across the skull. In addition, the Fukomys model deformed less at wider gapes, whereas the Bathyergus model deformed less at narrower gapes. These properties of the cranial morphology of Fukomys and Bathyergus are congruent with their respective chisel-tooth and scratch digging behaviours and, all other factors being equal, would enable the more efficient production of bite force at wider gapes in Fukomys. However, in vivo measurements of muscle forces and activation patterns are needed to fully understand the complex biomechanics of tooth digging.
Supplement 1 - SBFSEM step-by-step protocol from Three-dimensional reconstruction on cell level: case study elucidates the ultrastructure of the spinning apparatus of Embia sp. (Insecta: Embioptera)
Creators: name: Büsse, Sebastian
name: Hörnschemeyer, Thomas
name: Fischer, Christian
Publisher: name: The Royal Society
Year: 2016
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences

description: Spinning is a phenomenon not only present in spiders, but also in many other arthropods. The functional morphology and complexity of spinning organs is often poorly understood. Their elements are minute and studying them poses substantial methodological difficulties. This study presents a three-dimensional reconstruction of a silk gland of Embia sp. on cellular level, based on serial sections acquired with serial block-face scanning electron microscopy (SBFSEM) to showcase the power of this method. Previous studies achieved either high resolution to elucidate the ultrastructure or satisfying three-dimensional representations. The high-resolution achieved by SBFSEM can be easily used to reconstruct the three-dimensional ultrastructural organization of cellular structures. The herein investigated spinning apparatus of Embioptera can be taken as an example demonstrating the potential of this method. It was possible to reconstruct a multinucleated silk gland containing 63 nuclei. We focused on the applicability of this method in the field of morphological research and provide a step-by-step guide to the methodology. This will help applying the method to other arthropod taxa and will help significantly in adapting the method to other animals, animal parts and tissues.
Screening radiation-differentially expressed circular RNAs and establishing dose classification models in the human lymphoblastoid cell line AHH-1
Creators: name: Tian, Xue-Lei
name: Zhang, Ting-Ting
name: Cai, Tian-Jing
name: Tian, Mei
name: Liu, Qing-Jie
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Physical Sciences not elsewhere classified
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Virology

description: In the event of a large-scale radiological accident, rapid and high-throughput biodosimetry is the most vital basis in medical resource allocation for the prompt treatment of victims. However, the current biodosimeter is yet to be rapid and high-throughput. Studies have shown that ionizing radiation modulates expressions of circular RNAs (circRNAs) in healthy human cell lines and tumor tissue. circRNA expressions can be quantified rapidly and high-throughput. However, whether circRNAs are suitable for early radiation dose classification remains unclear. We employed transcriptome sequencing and bioinformatics analysis to screen for radiation-differentially expressed circRNAs in the human lymphoblastoid cell line AHH-1 at 4 h following exposure to 0, 2, and 5 Gy 60Co γ-rays. The dose–response relationships between differentially expressed circRNA expressions and absorbed doses were investigated using real-time polymerase chain reaction and linear regression analysis at 4 h, 24 h, and 48 h post-exposure to 0, 2, 4, 6, and 8 Gy. Six distinct dose classification models of circRNA panels were established and validated by receiver operating characteristic (ROC) curve analysis. A total of 11 radiation-differentially expressed circRNAs were identified and validated. Based on dose–response effects, those circRNAs changed in a dose-responsive or dose-dependent manner were combined into panels A through F at 4 h, 24 h, and 48 h post-irradiation. ROC curve analysis showed that panels A through C had the potential to effectively classify exposed and non-exposed conditions, which area under the curve (AUC) of these three panels were all 1.000, and the associate p values were .009. Panels D through F excellently distinguished between different dose groups (AUC = 0.963–1.000, p < .05). The validation assay showed that panels A through F demonstrated consistent excellence in sensitivity and specificity in dose classification. Ionizing radiation can indeed modulate the circRNA expression profile in the human lymphoblastoid cell line AHH-1. The differentially expressed circRNAs exhibit the potential for rapid and high-throughput dose classification.
Prospective self-gating for simultaneous compensation of cardiac and respiratory motion
Creators: name: Curcic, Jelena
name: Buehrer, Martin
name: Boesiger, Peter
name: Kozerke, Sebastian
Publisher: name: ETH Zurich
Year: 2008
Subjects: info:eu-repo/classification/ddc/610
Medical sciences, medicine

description: Journal of Cardiovascular Magnetic Resonance, 10 (S1)
description: ISSN:1097-6647
description: ISSN:1532-429X
Supplementary material. Additional figures and validation of the model. from A model to identify urban traffic congestion hotspots in complex networks
Creators: name: Solé-Ribalta, Albert
name: Gómez, Sergio
name: Arenas, Alex
Publisher: name: The Royal Society
Year: 2016
Subjects: subject: 20304 Thermodynamics and Statistical Physics
subject: FOS: Mechanical engineering
subject: 80201 Analysis of Algorithms and Complexity
subject: FOS: Computer and information sciences

description: The rapid growth of population in urban areas is jeopardizing the mobility and air quality worldwide. One of the most notable problems arising is that of traffic congestion. With the advent of technologies able to sense real-time data about cities, and its public distribution for analysis, we are in place to forecast scenarios valuable for improvement and control. Here, we propose an idealized model, based on the critical phenomena arising in complex networks, that allows to analytically predict congestion hotspots in urban environments. Results on real cities' road networks, considering, in some experiments, real-traffic data, show that the proposed model is capable of identifying susceptible junctions that might become hotspots if mobility demand increases.
title: Le jeu de société Zébulon : quels effets sur la lecture des mots auprès d'élèves ayant un trouble spécifique des apprentissages ?
title: Le jeu de société Zébulon : quels effets sur la lecture des mots auprès d'élèves ayant un trouble spécifique des apprentissages ?
titleType: AlternativeTitle
Creators: name: Du Bois D'Aische, Yves
name: Jacot, Oscar
Publisher: name: Unknown
Year: 0
Subjects: subject: Dyslexie
subject: Jeu de société
subject: GraphoGame
subject: Zebulon
subject: Décodage
subject: Lecture

description: Varier les méthodes d’apprentissage font partie intégrante de l’enseignement et particulièrement lorsqu’il s’agit d’élèves rencontrant de grandes difficultés d’apprentissage ou qui sont en décrochage scolaire. Le jeu est l’une des portes d’entrée pour donner ou redonner le goût d’apprendre au travers d’un moyen ludique. Notre idée pour ce mémoire professionnel était donc de lier la dyslexie et le jeu de société. En effet, à travers notre question de recherche, nous nous sommes posé la question de savoir si le jeu de société Zebulon avait un effet sur la compétence de décodage en lecture chez nos élèves de 12 – 13 ans atteints de dyslexie. Pour répondre à cette question de recherche, nous avons commencé par développer une partie théorique dans laquelle nous avons entrepris de définir ce qu’est la dyslexie ainsi que les différents types de dyslexie qui existent. Nous avons ensuite présenté ce qu’est le jeu, qu’il soit envisagé du point de vue des historiens, des sociologues ou des psychologues. Nous nous sommes ensuite attachés à présenter les résultats de nos lectures concernant des recherches ayant fait un lien entre les jeux vidéo et les adolescents dyslexiques. Ces recherches ont montré que les jeunes dyslexiques qui jouaient régulièrement à des jeux vidéo amélioraient leur compétence de décodage. Nous avons alors approfondi nos lectures et avons pu faire un lien entre notre idée de mémoire et des recherches qui ont été faites auprès d’un logiciel ludique créé dans le but d’améliorer la compétence de décodage des jeunes ; le Graphogame. Cette recherche sur le Graphogame a inspiré notre modèle de travail pour la partie pratique. La partie pratique se propose de répondre à la question de recherche en proposant une série de tests organisés sur plusieurs semaines et de façon à ce que des listes différentes de mots soient présentées aux élèves dans une première phase appelée pré-intervention, que les élèves puissent jouer au jeu Zebulon avant de lire des listes de mots dans une deuxième phase appelée intervention et qu’une troisième phase identique à la première est proposé comme post-intervention.
One file: Supplementary figures of “Strain differences in the collective behaviour of zebrafish (Danio rerio) in heterogeneous environment”.
Creators: name: Séguret, Axel
name: Collignon, Bertrand
name: Halloy, José
Publisher: name: The Royal Society
Year: 2016
Subjects: subject: 60801 Animal Behaviour
subject: FOS: Biological sciences

description: Recent studies show differences in individual motion and shoaling tendency between strains of the same species. Here, we analyse collective motion and response to visual stimuli in two morphologically different strains (TL and AB) of zebrafish. For both strains, we observed 10 groups of 5 and 10 zebrafish swimming freely in a large experimental tank with two identical landmarks (cylinders or discs) for 1 h. We tracked the positions of the fish by an automated tracking method and compute several metrics at the group level. First, the probability of the presence shows that both strains avoid free space and are more likely to swim in the vicinity of the walls of the tank and the landmarks. Second, the analysis of landmarks occupancy shows that AB zebrafish are more present in their vicinity than TL ones and that both strains regularly transit from one to the other one with no preference on the long duration. Finally, TL zebrafish show a higher cohesion than AB zebrafish. Thus, environmental heterogeneity and duration of the trials allow to reveal individual and collective behavioural variabilities among different strains of zebrafish. These results provide a new insight into the need to take into account individual variability of zebrafish strains for studying collective behaviour.
Exploring the role and extent of Information and Communication Technology (ICT) for pedagogic purposes: the case study of higher education in Vietnam
Creators: name: Pham, Van Nho
Publisher: name: Zenodo
Year: 2025
Subjects: ICT in Vietnam's HE
E-learning
ICT Stakeholders

description: The study into the role of Information and Communication Technology (ICT) for highereducation in Vietnam is a topic of significant importance and value, adding theoreticalbackground and proposing practical solutions for policymakers to improve education qualityin the modern era. Results from a questionnaire of 512 students attending a university inVietnam, rated on a 5-point Likert scale, indicate that among the five ICT dimensions, thethree factors with the highest means are Usefulness, Reliability, and Internet Connection, withrespective means of 3.71, 3.94, and 4.14. Moreover, among the five pedagogic purposes withICT, results from the survey show that ICT contributes most significantly to "collaboration"and "creativity" among students, with an average of 3.82 and 4.29, respectively. The studyrevealed that the “Internet Connection” factor has the strongest impact on pedagogicpurposes, particularly on the aspects of "creativity" and "collaboration" among students, withcorrelation coefficients of 0.832 and 0.775.The research also carried out the thematic analysis method via interviews with 10 seniormanagers, who play a strategic role and contribution to ICT implementation in universities.The main difficulties identified from the interview results relate to the development of digitalstudy materials suitable for the diversity of training professions or developing a digital library;deploying an effective learning management system (LMS); and the digital divide with ICTcompetence gap between rural and urban areas. Internet infrastructure connectivity in remoteareas is still unstable, coupled with low average income leading to many students not havingthe means to excel their ICT skills from lower levels of education before entering university.One of the most important solutions proposed includes the combination of developing digitalstudy materials and courses for online learning, which requires long-term cooperationbetween universities with private firms and public sectors. Additionally, policies should besupplemented to increase government student loan amounts, facilitating students from lowincomeareas to purchase equipment serving educational purposes and national digitaltransformation in Vietnamese’s HE system.
Deciphering induced variability, character association and multivariate analysis utilizing gamma rays and ethyl methanesulfonate in bread wheat (Triticum aestivum L.) genotypes with differential grain texture
Creators: name: Rana, Amit
name: Rana, Vijay
name: Bakshi, Suman
name: Sood, Vinod Kumar
name: Priyanka
name: Anuradha
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biophysics
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: Evolutionary Biology
subject: Ecology
subject: Cancer
subject: Plant Biology
subject: Virology

description: Sustainable wheat production and higher genetic gains can be realized by broadening the genetic base and improving the well adapted varieties. In the present study, a multi-year experiment involving induced mutagenesis was conducted to create genetic variation, assess trait associations and genetic divergence in four wheat varieties with differential grain texture treated with six doses of gamma rays and ethyl methane sulfonate using ten agro-morphological traits. Healthy selfed seeds of four bread wheat varieties with differential texture were irradiated using six doses ranging from 175 Gy-300 Gy of gamma rays (Co60: BARC, Mumbai) and six concentrations of ethyl methanesulfonate (0.3–1.3%) (Sigma-Aldrich, Bangalore, India) to evaluate variability, character association and degree of genetic diversity induced among the mutagenic treatments of wheat varieties with differential grain texture. Significant inter-population differences were observed for almost all the traits. The sample mean of twelve mutant populations in each of the cultivar exhibited superior quantitative phenotypic traits and increased values of the genetic parameters. Based on association and variability studies, plant height, spike length, grain filling period, biological yield per plant and harvest index can be used as early generation criteria for maximum genetic improvement. Multivariate studies indicated the contribution of various traits towards divergence and indicated the efficiency of mutagens in generating variability. Gamma-irradiation dosages between 200–250 Gy and 0.5–1.1% EMS for soft-textured varieties, whereas doses between 225–275 Gy and 0.5–0.9% EMS were found to be most potent for semi-hard-textured varieties. Assessment of mutagen sensitivity showed that semi-hard wheat varieties were responsive to both mutagens, particularly EMS and generated higher variability and divergence than the soft textured varieties. Hence, gamma rays were proved to be more effective in generating higher variability than ethyl methanesulfonate. A total of 117 putative mutants were identified with desirable agro-morphological attributes. Among these, mutants with higher inter-cluster distance can be used as parents in hybridization programs and serve as important genetic resources in future wheat improvement programs.
title: 3. Live dans le ṭäǧǧ bét mené par Gäbäyähu Mola
Creators: name: Wion, Anaïs
name: Bolay, Anne
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020

description: Un client lance un poème repris par l'azmari.
Phenotypic and transcriptional changes in lens epithelial cells following acute and fractionated ionizing radiation exposure
Creators: name: Vigneux, Graysen
name: Laframboise, Taylor
name: Tharmalingam, Sujeenthar
name: Thome, Christopher
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biophysics
subject: Physical Sciences not elsewhere classified
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Exposure to ionizing radiation is one of the known risk factors for the development of lens opacities. It is believed that radiation interactions with lens epithelial cells (LEC) are the underlying cause of cataract development, however, the exact mechanisms have yet to be identified. The aim of this study was to investigate how different radiation dose and fractionation impact normal LEC function. A human derived LEC cell line (HLE-B3) was exposed to a single acute x-ray dose (0.25 Gy) and 6 fractionated doses (total dose of 0.05, 0.1, 0.25, 0.5, 1, and 2 Gy divided over 5 equal fractions). LEC were examined for proliferation using a 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay and migration using a Boyden chamber assay at various time points (0.25, 0.5, 1, 2, 4, 7, 9, 11, and 14 d) post-irradiation. Transcriptomic analysis through RNA sequencing was also performed to identify differentially expressed genes and regulatory networks in cells following 4 different acute exposures and 1 fractionated exposure. Exposure to an acute dose of 0.25 Gy significantly increased proliferation and migration rates, peaking at 7 d post irradiation (20% and 240% greater than controls, respectively), before returning to baseline levels by day 14. Fractionated exposures had minimal effects up to a dose of 0.5 Gy, but significantly reduced proliferation and migration after 1 and 2 Gy by up to 50%. The largest transcriptional response occurred 12 h after an acute 0.25 Gy dose, with 362 genes up-regulated and 288 genes down-regulated. A unique panel of differentially expressed genes was observed between moderate versus high dose exposures, suggesting a dose-dependent transcriptional response in LEC that is more pronounced at lower doses. Gene ontology and upstream regulator analysis identified multiple biological processes and molecular functions implicated in the radiation response, in particular differentiation, motility, receptor/ligand binding, cell signaling and epithelial-mesenchymal cell transition. Overall, this research provides novel insights into the dose and fractionation effects on functional changes and transcriptional regulatory networks in LEC, furthering our understanding of the mechanisms behind radiation induced cataracts.
Appendices from Identifying the necrotic zone boundary in tumour spheroids with pair-correlation functions
Creators: name: S. Dini
name: B. J. Binder
name: S. C. Fischer
name: C. Mattheyer
name: A. Schmitz
name: E. H. K. Stelzer
name: N. G. Bean
name: J. E. F. Green
Publisher: name: The Royal Society
Year: 2016
Subjects: subject: 111602 Human Biophysics
subject: FOS: Basic medicine
subject: Computational Biology
subject: 10202 Biological Mathematics
subject: FOS: Mathematics
subject: 80109 Pattern Recognition and Data Mining
subject: FOS: Computer and information sciences

description: Methods details and further results
Online Methods from Extinction debt from climate change for frogs in the wet tropics
Creators: name: Fordham, Damien A.
name: Brook, Barry W.
name: Hoskin, Conrad J.
name: Pressey, Robert L.
name: VanDerWal, Jeremy
name: Williams, Stephen E.
Publisher: name: The Royal Society
Year: 2016
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Detailed description of the methods
Supplementary Information from Core signalling motif displaying multistability through multi-state enzymes
Creators: name: Feng, Song
name: Meritxell Sáez
name: Wiuf, Carsten
name: Feliu, Elisenda
name: Soyer, Orkun S.
Publisher: name: The Royal Society
Year: 2016
Subjects: subject: Biochemistry
subject: 60114 Systems Biology
subject: FOS: Biological sciences
subject: 60113 Synthetic Biology

description: Bistability, and more generally multistability, is a key system dynamics feature enabling decision-making and memory in cells. Deciphering the molecular determinants of multistability is thus crucial for a better understanding of cellular pathways and their (re)engineering in synthetic biology. Here, we show that a key motif found predominantly in eukaryotic signalling systems, namely a futile signalling cycle, can display bistability when featuring a two-state kinase. We provide necessary and sufficient mathematical conditions on the kinetic parameters of this motif that guarantee the existence of multiple steady states. These conditions foster the intuition that bistability arises as a consequence of competition between the two states of the kinase. Extending from this result, we find that increasing the number of kinase states linearly translates into an increase in the number of steady states in the system. These findings reveal, to our knowledge, a new mechanism for the generation of bistability and multistability in cellular signalling systems. Further the futile cycle featuring a two-state kinase is among the smallest bistable signalling motifs. We show that multi-state kinases and the described competition-based motif are part of several natural signalling systems and thereby could enable them to implement complex information processing through multistability. These results indicate that multi-state kinases in signalling systems are readily exploited by natural evolution and could equally be used by synthetic approaches for the generation of multistable information processing systems at the cellular level.
title: 4. Live dans le ṭäǧǧ bét mené par Gäbäyähu Mola
Creators: name: Wion, Anaïs
name: Bolay, Anne
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020

description: Les clients rivalisent pour proposer des poèmes rimés au chanteur.
Energy dissipation at the rupture front of laboratory earthquakes
Creators: name: Kammer, David S.
name: McLaskey, Gregory C.
Publisher: name: ETH Zurich
Year: 2021

description: The energy dissipated during the friction weakening process at the front of an earthquake rupture, which is known as the fracture energy, is a key earthquake property. It directly affects the nucleation, propagation and arrest of earthquake ruptures, and, is therefore related to important questions, including the maximum possible size of earthquakes at a given fault section. However, estimating the fracture energy in the field is a difficult task and current approaches remain limited. In this work, we present near-fault strain measurements of large-scale laboratory earthquakes on a granite fault. The strain measurements present high-frequency fluctuations while the fault is sliding. These strain fluctuations are indicative of rupture fronts that propagate across the entire fault and occasionally reflect at the boundaries. Here, we will characterize these strain fluctuations by applying fracture-mechanics theory. We will demonstrate that the shape and time scales of the strain fluctuations are well described by the proposed analytical solution. We will further show that by fitting the amplitude of the theory to the experimental measurement, we can estimate the local fracture energy. We apply this process to determine the fracture energy for secondary rupture fronts, which appear within the sliding rupture area. The results are consistent with fracture energy estimates from laboratory-earthquake arrest experiments, but are orders of magnitude lower than reported values from small-scale rotary shear friction experiments. We will discuss the implications and potential of these observations.
description: EGUsphere
Figure S1 from Extinction debt from climate change for frogs in the wet tropics
Creators: name: Fordham, Damien A.
name: Brook, Barry W.
name: Hoskin, Conrad J.
name: Pressey, Robert L.
name: VanDerWal, Jeremy
name: Williams, Stephen E.
Publisher: name: The Royal Society
Year: 2016
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Extinction risk for frogs in the Australian wet tropics simulated using an extreme Allee effect
Table S1 from Extinction debt from climate change for frogs in the wet tropics
Creators: name: Fordham, Damien A.
name: Brook, Barry W.
name: Hoskin, Conrad J.
name: Pressey, Robert L.
name: VanDerWal, Jeremy
name: Williams, Stephen E.
Publisher: name: The Royal Society
Year: 2016
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Sensitivity analysis for niche-population models
Supplementary Material for: Numerical algebraic geometry for mo del selection and its application to the life sciences
Creators: name: Gross, Elizabeth
name: Davis, Brent
name: Ho, Kenneth L.
name: Bates, Daniel J.
name: Harrington, Heather A.
Publisher: name: The Royal Society
Year: 2016
Subjects: subject: 60114 Systems Biology
subject: FOS: Biological sciences
subject: Computational Biology
subject: 10202 Biological Mathematics
subject: FOS: Mathematics

description: Researchers working with mathematical models are often confronted by the related problems of parameter estimation, model validation and model selection. These are all optimization problems, well known to be challenging wooing to nonlinearity, non-convexity and multiple local optima. Furthermore, the challenges are compounded when only partial data are available. Here, we consider polynomial models (e.g. mass-action chemical reaction networks at steady state) and describe a framework for their analysis based on optimization, using numerical algebraic geometry. Specifically, we use probability-one polynomial homotopy continuation methods to compute all critical points of the objective function, then filter to recover the global optima. Our approach exploits the geometrical structures relating models and data, and we demonstrate its utility on examples from cell signalling, synthetic biology and epidemiology.
Appendices from Anthropogenic transport of species across native ranges: unpredictable genetic and evolutionary consequences
Creators: name: Hudson, Jamie
name: Viard, Frédérique
name: Roby, Charlotte
name: Rius, Marc
Publisher: name: The Royal Society
Year: 2016
Subjects: subject: Molecular Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Environmental Science
subject: Ecology

description: This file includes all the appendices (S1-S10), which provide further details of the methods and results obtained. In addition, this file contains supplementary tables (S1-S5) and figures (S1-S4), as well as a final reference list of the studies cited in the appendix
Implicit shape representations for analytically differentiable contact dynamics
Creators: name: Widmer, Daniel
Publisher: name: ETH Zurich
Year: 2021
Subjects: Differentiable simulation
Implicit shape representation
Deep learning
Contact mechanics
Robotics
Collision detection

description: With the advances in robotics and increased research in deep learning, a variety of differentiable physics frameworks have been introduced in recent years.  This thesis aims at extending an existing simulation framework with the ability to handle collisions with complex geometries while preserving the property of differentiability. The penalty-based contact model is extended to handle frictional contact for various collision types by describing complex shapes with implicit shape representations.  This approach allows a general formulation of the friction model for arbitrary signed distance functions. Two different ways for implicit shape representations are presented:  an efficient method based on sparse volume hierarchies and a state-of-the-art deep neural network architecture for learning shape representations.  The results are demonstrated and studied in simulation experiments and applied to inverse problems.
Figure S2 from Extinction debt from climate change for frogs in the wet tropics
Creators: name: Fordham, Damien A.
name: Brook, Barry W.
name: Hoskin, Conrad J.
name: Pressey, Robert L.
name: VanDerWal, Jeremy
name: Williams, Stephen E.
Publisher: name: The Royal Society
Year: 2016
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Extinction risk for frogs in the Australian wet tropics under a baseline ‘no climate change’ scenario