cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Paramedetera digitata Grootaert, 2006, new species
Creators: name: Grootaert, Patrick
Publisher: name: Zenodo
Year: 2006
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Dolichopodidae
Paramedetera
Paramedetera digitata

description: Paramedetera digitata, new species
(Figs. 11-12)
 Material examined. – Holotype - male: SINGAPORE: Nee Soon, 9 Mar.2005, swamp forest (25004, coll. P. Grootaert, Si 384; ZRC).
 Description. – Male. Body length: 1.50 mm; wing length: 1.25 mm. Ocellar and vertical bristles brown. Palpi black with a black apical bristle. Four dorsocentrals, anterior 2 shorter than posterior 2. All bristles on scutum dark brown. Propleural bristle long, pale brown. Halter greyish-brown. Squama brown with long pale cilia. Legs yellowish-brown, but all coxae and femora brown. Tibiae and tarsi yellowish, 4 th and 5 th tarsomeres of all legs dark brown.
LI: Length of femur, tibia and tarsomeres (in mm): 0.35: 0.35: 0.19: 0.07: 0.06: 0.04: 0.06.
LII: Length of femur, tibia and tarsomeres (in mm): 0.38: 0.42: 0.21: 0.10: 0.07: 0.04: 0.06.
LIII: Length of femur, tibia and tarsomeres (in mm): 0.42: 0.42: 0.12: 0.15: 0.07: 0.06: 0.06.
Hypopygium (Figs. 11-12) rather elongate. Aedeagus orange, with a downwards pointed tip. Hypandrium triangular, a little sunk between the rounded lobes of the epandrium that bears the basal epandrial seta. Epandrial setae all short, none on a tubercle. Lateral to the epandrial setae is a black finger-like projection of the epandrium. Dorsal surstylus with a curved tip, large and wide in lateral view (not straight and stalk-like as in the other species).
 Female unknown.
 Etymology. – The name digitata refers to the finger-like projections on the epandrium dorsad of the epandrial setae. This is so far a unique character in Paramedetera.
 Differential diagnosis. – A finger-like projection lateral to the epandrial setae is not present in other Paramedetera species.
description: Published as part of Grootaert, Patrick, 2006, The Genus Paramedetera (Diptera: Dolichopodidae) In Singapore, With A Key To The Oriental Species, pp. 49-57 in Raffles Bulletin of Zoology 54 (1) on pages 54-55, DOI: 10.5281/zenodo.13245222
Additional file 1 of The PrEPARE Pretoria Project: protocol for a cluster-randomized factorial-design trial to prevent HIV with PrEP among adolescent girls and young women in Tshwane, South Africa
Creators: name: Wechsberg, Wendee M.
name: Browne, Felicia A.
name: Ndirangu, Jacqueline
name: Bonner, Courtney Peasant
name: Minnis, Alexandra M.
name: Nyblade, Laura
name: Speizer, Ilene S.
name: Howard, Brittni N.
name: Myers, Bronwyn
name: Khatija Ahmed
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 1: Figure File 1. CONSORT Diagram.
Pygoluciola kinabalua
Creators: name: Lambkin, L. A. Ballantyne C.
Publisher: name: Zenodo
Year: 2006
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lampyridae
Pygoluciola
Pygoluciola kinabalua

description: Pygoluciola kinabalua (Ballantyne)
(Figs. 3, 7, 38-40)
 Luciola (Pygoluciola) kinabalua Ballantyne & Lambkin, 2001: 371 [Holotype male Malaysia, Sabah: Mt Kinabalu (BMNH)].
 Diagnosis. – Males elongate slender (Figs. 3, 7), about three times as long as wide, with elytra subparallel sided; one of two species of Pygoluciola with the apex of the MPP of V7 emarginate, gently so in this species; distinguished from P. wittmeri, which has a deeply emarginate apex; female with posterior margin of V7 deeply and broadly emarginate, with a small transverse ridge just anterior to this emargination, lateral projections moderately broad and apically rounded; tergite 7 with strongly sclerotised median ‘mound’; lateral margins of anterior prolongation of V8 not well sclerotised nor well defined.
description: Published as part of Lambkin, L. A. Ballantyne C., 2006, A Phylogenetic Reassessment Of The Rare S. E. Asian Firefly Genus Pygoluciola Wittmer (Coleoptera: Lampyridae: Luciolinae), pp. 21-48 in Raffles Bulletin of Zoology 54 (1) on page 29, DOI: 10.5281/zenodo.13245290
title: Through the Camera Lens of Development: An Exploration of NGOS' Representations of Africa
Creators: name: Lindstrom, Sebastian
Publisher: name: University of Massachusetts Amherst
Year: 2014
Subjects: subject: Qualitative
subject: Research
subject: Africa
subject: African
subject: NGO
subject: Video
subject: HIV/AIDS
subject: Community
subject: Help
subject: Power
subject: Development
subject: Representation
subject: Media
subject: Film
subject: Donors
subject: Beneficiaries
subject: Bilingual, Multilingual, and Multicultural Education
subject: Curriculum and Social Inquiry
subject: Education
subject: Film and Media Studies
subject: International and Comparative Education
subject: Other Film and Media Studies
subject: Psychology
subject: FOS: Psychology
subject: Social and Philosophical Foundations of Education
subject: Social Work
subject: FOS: Sociology

description: The purpose if this qualitative research is to acquire new knowledge in the African visual representational landscape, a digital space carefully filmed and edited by some of the most celebrated and acknowledged, mostly Western, NGOs in the world. The most watched Africa-related video from 50 NGOs were selected, downloaded and analyzed. After continuous re-watching of a 3.5 hour long set of visual data tree themes emerged. One segment relates around the NGOs intervention, another about the term or statement ‘help’, and the last theme is HIV/AIDS. The findings include the realization that the beneficiary was never explaining the intervention of the NGOs project itself; he or she, the subject, only represented the need of the intervention. Common words used in the videos analyzed, for example community and help, represents a set of skillfully branded donor-driven words. Controlling their importance and meaning within the system of development allows the development agencies to stay relevant. This analysis proposes a conversation among development practitioners, online and offline, on the topic of mitigating unequal power relations. A set of reverse-representational campaigns have been launched by various NGOs and institutions in the last years; these initiatives paves the way for the future realignment of fighting serotypes in a changing African landscape.
Additional file 5 of The PrEPARE Pretoria Project: protocol for a cluster-randomized factorial-design trial to prevent HIV with PrEP among adolescent girls and young women in Tshwane, South Africa
Creators: name: Wechsberg, Wendee M.
name: Browne, Felicia A.
name: Ndirangu, Jacqueline
name: Bonner, Courtney Peasant
name: Minnis, Alexandra M.
name: Nyblade, Laura
name: Speizer, Ilene S.
name: Howard, Brittni N.
name: Myers, Bronwyn
name: Khatija Ahmed
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 5: Supplementary File 4. Estimated Detectable Differences in PrEP Uptake between AGYW in the PrEP/SRH + YWHC arm vs. PrEP/SRH only, controlling for intervention arm of clinic.
Additional file 4 of The PrEPARE Pretoria Project: protocol for a cluster-randomized factorial-design trial to prevent HIV with PrEP among adolescent girls and young women in Tshwane, South Africa
Creators: name: Wechsberg, Wendee M.
name: Browne, Felicia A.
name: Ndirangu, Jacqueline
name: Bonner, Courtney Peasant
name: Minnis, Alexandra M.
name: Nyblade, Laura
name: Speizer, Ilene S.
name: Howard, Brittni N.
name: Myers, Bronwyn
name: Khatija Ahmed
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 4: Supplementary File 3. AGYW baseline survey.
Teuchophorus pauper Meuffels & Grootaert 2004
Creators: name: Grootaert, Patrick
Publisher: name: Zenodo
Year: 2006
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Dolichopodidae
Teuchophorus
Teuchophorus pauper

description: Teuchophorus pauper Meuffels & Grootaert, 2003
(Figs. 20-21)
  Material examined. –  THAILAND: 4 males, Phang-Nga, Sa Nangmanora (type locality), 23 Oct.1997 (97104, coll. P. Grootaert); 12 males, Phang-Nga province, Thap Put, 23 Oct.1997, (97107, coll. P. Grootaert) mixed population of T. singaporensis and T. pauper so 3 females unidentified; 1 male, Satun province, Ban Du Son, 29 Oct.1997, forest with mainly bamboo, (97141, coll. P. Grootaert, RBINS); 119 males, 31 females, Songkhla province, Ban Khlong Kua, 29 Oct.1997, secondary rain forest (97142, coll. P. Grootaert, RBINS), pure population of T. pauper, no T. singaporensis present; 2 males, 2 females, Satun province, 20 km north of La-Ngu, 1 Nov.1997, secondary rain forest (97155, coll. P. Grootaert, RBINS); 10 males, 1 female, Satun province, 21 km north of La-Ngu, 1 Nov.1997, secondary rain forest (97156, coll. P. Grootaert, RBINS).
  Diagnosis. –  Medium-sized species with yellowish antennae. No acr; 5 dc. Bristles on head, thorax and legs yellow to yellowish brown. Costa not thickened. Prosterna entirely brown with a central black stripe. Mesopleura almost entirely brown. Hypandrium bifurcate, but asymmetric with a very short left arm and a longer right arm. The tip of the right arm is rugose in right lateral view. The tip of the aedeagus is long effilate. The dorsal surstylus is dorsally near tip excavated and bears two long bristles at the base of the concavity.
 Description. – Male. Body length: 1.5 mm, wing length: 1.25 mm.
Meuffels & Grootaert (2003) shows curiously bent appendages below the hypandrium. Specimens of the type locality (Sa Nangmanora near Phang-Na, Thailand) were re-examined. In the original description (Fig. 120) the structure of the right hypandrial arm was misinterpreted. It is much shorter and has a rugose (wrinkled) tip. The dorsal epandrial lobe is very long and bears two short, pointed appendages (Fig. 20).
 I have not found T. pauper in Singapore. Considering its distribution in South-Thailand and the mixed populations of T. pauper and T. singaporensis, it is likely to occur in Singapore as well.
  Distribution and habitat. –  South Thailand, Indonesia: Sulawesi Utara. Rain forest and swamp forest.
description: Published as part of Grootaert, Patrick, 2006, The Genus Teuchophorus (Diptera: Dolichopodidae) In Singapore, pp. 59-82 in Raffles Bulletin of Zoology 54 (1) on pages 68-69, DOI: 10.5281/zenodo.13245314
Additional file 7 of The PrEPARE Pretoria Project: protocol for a cluster-randomized factorial-design trial to prevent HIV with PrEP among adolescent girls and young women in Tshwane, South Africa
Creators: name: Wechsberg, Wendee M.
name: Browne, Felicia A.
name: Ndirangu, Jacqueline
name: Bonner, Courtney Peasant
name: Minnis, Alexandra M.
name: Nyblade, Laura
name: Speizer, Ilene S.
name: Howard, Brittni N.
name: Myers, Bronwyn
name: Khatija Ahmed
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 7: Supplementary File 6. Ethical approval proofs.
Teuchophorus simplicissimus Meuffels & Grootaert 2004
Creators: name: Grootaert, Patrick
Publisher: name: Zenodo
Year: 2006
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Dolichopodidae
Teuchophorus
Teuchophorus simplicissimus

description: Teuchophorus simplicissimus Meuffels & Grootaert, 2003
(Figs. 31-34)
Meuffels & Grootaert, 2003: 222, Figs. 192-197.
  Material examined. –  SINGAPORE: 15 males, Sungei Buloh, 6 Oct.2000 (20032, coll. P. Grootaert & N. Evenhuis); 19 males, 22 females, Sungei Buloh, 9 Dec.2002 (22057, coll. P. Grootaert); 7 males, Sungei Buloh, 28 May.2005 (25037, coll. P. Grootaert, Si 555); 62 males, Sungei Buloh, 22 Jun.2005 (25121, coll. P. Grootaert, Si 795); 10 males, Sungei Buloh, 26 Aug.2005, sweep netting (25321, coll. P. Grootaert, Si 1020); 1 male, Kranji, 27 Jul.2005 (25254, coll. P. Grootaert, Si 926).
MALAYSIA: 70 males, 48 females, Pulau Tioman, Monkey Bay, 14 Jul.2005 (25217, coll. P. Grootaert, Tio 30); 14 males, Juara, 20 Jul.2005 (25244, coll. P. Grootaert, Tio 76); 67 males, Juara, 20 Jul.2005 (25245, coll. P. Grootaert, Tio 86); 33 males, Juara, 20 Jul.2005 (25246, coll. P. Grootaert, Tio 124).
  Diagnosis. –  Third antennal segment hardly as long as wide. Costa not swollen, but darkened between r1 and r2+3. First tarsomere of fore leg with a basal spinule. Mid femur without bristles. Mid tibia with a row of ventral spinules in apical third. Hind femur without ventrals. Hind tibia posteriorly in second basal quarter with about 5 erect hairs. Tip of hypandrium with a small hook.
  Discussion. –  The specimens in Sungei Buloh are a little smaller than the ones on Pulau Tioman. Study of the male genitalia (Figs. 33 vs. 32) suggests that they are conspecific. It is confirmed by genetic work (Wei Song, Grootaert & Meier, in litt.). For identification one should check the presence of the 5 erect hairs in the second basal quarter posteriorly on the hind tibia.
  Distribution and habitat. –  Thailand, Malaysia and Singapore. It is very common in the upper, less saline parts of mangroves in Singapore. The specimens in Thailand were collected on the sides of pools in a cave system in connection with a mangrove.
description: Published as part of Grootaert, Patrick, 2006, The Genus Teuchophorus (Diptera: Dolichopodidae) In Singapore, pp. 59-82 in Raffles Bulletin of Zoology 54 (1) on pages 73-74, DOI: 10.5281/zenodo.13245314
The cognitive and neurobiological mechanisms of thought disorder in schizophrenia
Creators: name: Sumner, Philip James
Publisher: name: Swinburne
Year: 2024

description: Schizophrenia is a mental illness with a substantial disease burden. However, the scientific study of schizophrenia has been limited by its heterogeneity. This research used a symptom-focused approach to investigate the cognitive and neuroimaging correlates of thought disorder, one domain of symptoms that are associated with schizophrenia. Measurements of thought disorder were considered from a first-person perspective, as well as from observations made from a third-person perspective. The work conducted emphasises the need to improve these measurements of thought disorder so that future research can establish the reasons for its occurrence and how it might be better treated.
The effect of depressive symptoms on pain in a substance-using population with persistent pain: a cross-sectional cohort study
Creators: name: Voon, Pauline
name: Choi, JinCheol
name: Hayashi, Kanna
name: Milloy, M-J
name: Buxton, Jane A.
name: Kerr, Thomas
Publisher: name: BioMed Central
Year: 2021

description: Background In light of the ongoing opioid overdose crisis, there is an urgent need for research on the impacts of mental health among people presenting with concurrent pain and substance use. This study examined the effect of depressive symptoms on pain severity and functional interference among people who use drugs (PWUD) during a community-wide overdose crisis. Methods From December 1st 2016 to December 31st 2018, 288 participants in two cohort studies of PWUD in Vancouver, Canada completed interviewer-administered questionnaires that included the Brief Pain Inventory and PROMIS Emotional Distress–Depression instruments. Generalized linear regression modelling (GLM) was used to examine the cross-sectional effect of depressive symptoms and other confounding factors on pain severity and interference. Results Moderate to severe depressive symptoms were significantly associated with greater pain-related functional interference (adjusted β = 1.24, 95% confidence interval [CI] = 0.33–2.15), but not significantly associated with greater average pain severity (adjusted β = 0.22, 95% CI = − 0.3 – 0.82), when controlling for confounding variables. Reported daily heroin use (adjusted β = 1.26, 95% CI = 0.47–2.05) and non-fatal overdose (adjusted β = 1.02, 95% CI = 0.08–1.96) were also significantly associated with greater pain-related functional interference. Conclusions In a substance-using population, greater pain-related functional interference was positively associated with depressive symptoms as well as overdose and daily heroin use. These findings emphasize the need to address the functional impact of pain, mental health comorbidity, and high-risk substance use that may contribute to overdose and other harms.
Prior-Preconditioned Conjugate Gradient Method for Accelerated Gibbs Sampling in “Large n, Large p” Bayesian Sparse Regression
Creators: name: Nishimura, Akihiko
name: Suchard, Marc A.
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Cell Biology
subject: Neuroscience
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: FOS: Biological sciences

description: In a modern observational study based on healthcare databases, the number of observations and of predictors typically range in the order of 105–106 and of 104–105. Despite the large sample size, data rarely provide sufficient information to reliably estimate such a large number of parameters. Sparse regression techniques provide potential solutions, one notable approach being the Bayesian method based on shrinkage priors. In the “large n and large p” setting, however, the required posterior computation encounters a bottleneck at repeated sampling from a high-dimensional Gaussian distribution, whose precision matrix Φ is expensive to compute and factorize. In this article, we present a novel algorithm to speed up this bottleneck based on the following observation: We can cheaply generate a random vector b such that the solution to the linear system Φβ=b has the desired Gaussian distribution. We can then solve the linear system by the conjugate gradient (CG) algorithm through matrix-vector multiplications by Φ; this involves no explicit factorization or calculation of Φ itself. Rapid convergence of CG in this context is guaranteed by the theory of prior-preconditioning we develop. We apply our algorithm to a clinically relevant large-scale observational study with n=72,489 patients and p=22,175 clinical covariates, designed to assess the relative risk of adverse events from two alternative blood anti-coagulants. Our algorithm demonstrates an order of magnitude speed-up in posterior inference, in our case cutting the computation time from two weeks to less than a day. Supplementary materials for this article are available online.
Scydmaenini Leach 1815
Creators: name: Zaragoza-Caballero, Santiago
name: Rodríguez-Mirón, Geovanni M.
name: Vega-Badillo, Viridiana
name: González-Ramírez, Mireya
name: Zurita-García, Martín L.
name: Domínguez-León, Daniel E.
name: López-Pérez, Sara
name: Gutiérrez-Carranza, Ishwari G.
name: Cifuentes-Ruiz, Paulina
name: Pérez-Hernández, Cisteil X.
name: Valle, Enya Ramírez Del
name: Gutiérrez, Nayeli
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae

description: Tribe Scydmaenini Leach, 1815
Scydmaenus brunneus Schaum, 1841. Source: Burgos & Trejo-Loyo 2001; Navarrete-Heredia & Newton 2013 Ascydmus sp. Source: Burgos & Trejo-Loyo 2001; Márquez 1994
Neladius sp. Source: Burgos & Trejo-Loyo 2001; Márquez 1994
description: Published as part of Zaragoza-Caballero, Santiago, Rodríguez-Mirón, Geovanni M., Vega-Badillo, Viridiana, González-Ramírez, Mireya, Zurita-García, Martín L., Domínguez-León, Daniel E., López-Pérez, Sara, Gutiérrez-Carranza, Ishwari G., Cifuentes-Ruiz, Paulina, Pérez-Hernández, Cisteil X., Valle, Enya Ramírez Del & Gutiérrez, Nayeli, 2019, A checklist of the Coleoptera (Insecta) from Morelos, Mexico, pp. 1-122 in Zootaxa 4580 (1) on page 37, DOI: 10.11646/zootaxa.4580.1.1, http://zenodo.org/record/2637573
Additional file 6 of The PrEPARE Pretoria Project: protocol for a cluster-randomized factorial-design trial to prevent HIV with PrEP among adolescent girls and young women in Tshwane, South Africa
Creators: name: Wechsberg, Wendee M.
name: Browne, Felicia A.
name: Ndirangu, Jacqueline
name: Bonner, Courtney Peasant
name: Minnis, Alexandra M.
name: Nyblade, Laura
name: Speizer, Ilene S.
name: Howard, Brittni N.
name: Myers, Bronwyn
name: Khatija Ahmed
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 6: Supplementary File 5. Spirit checklist.
Prior-preconditioned conjugate gradient method for accelerated Gibbs sampling in ‘large n & large p’ Bayesian sparse regression
Creators: name: Nishimura, Akihiko
name: Suchard, Marc A.
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Neuroscience
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: FOS: Biological sciences

description: In a modern observational study based on healthcare databases, the number of observations and of predictors typically range in the order of 105∼106 and of 104∼105. Despite the large sample size, data rarely provide sufficient information to reliably estimate such a large number of parameters. Sparse regression techniques provide potential solutions, one notable approach being the Bayesian method based on shrinkage priors. In the “large n & large p” setting, however, the required posterior computation encounters a bottleneck at repeated sampling from a high-dimensional Gaussian distribution, whose precision matrix Φ is expensive to compute and factorize. In this article, we present a novel algorithm to speed up this bottleneck based on the following observation: we can cheaply generate a random vector b such that the solution to the linear system Φβ=b has the desired Gaussian distribution. We can then solve the linear system by the conjugate gradient (CG) algorithm through matrix-vector multiplications by Φ; this involves no explicit factorization or calculation of Φ itself. Rapid convergence of CG in this context is guaranteed by the theory of prior-preconditioning we develop. We apply our algorithm to a clinically relevant large-scale observational study with n=72,489 patients and p=22,175 clinical covariates, designed to assess the relative risk of adverse events from two alternative blood anti-coagulants. Our algorithm demonstrates an order of magnitude speed-up in posterior inference, in our case cutting the computation time from two weeks to less than a day.
Alkaff et al. (2024), Protocol for a co-design study for the development of a chronotherapeutic mobile health behaviour change intervention targeting light exposure among older adults: Supplementary material – COREQ 32-Item Checklist
Creators: name: Alkaff, Zahrah Alwi
name: Del Villar, Denz
name: Murukesu, Resshaya Roobini
name: Spitschan, Manuel
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 420302
subject: Digital health
classificationCode: 520106
subject: Psychology of ageing
classificationCode: 330405
subject: Public participation and community engagement

description: Alkaff et al. (2024), Protocol for a co-design study for the development of a chronotherapeutic mobile health behaviour change intervention targeting light exposure among older adultsSupplementary material – COREQ 32-Item Checklist
Basic Chemical Composition and Concentration of Selected Bioactive Compounds in Leaves of Black, Red and White Currant
Creators: name: Ziobroń, Magdalena
name: Kopeć, Aneta
name: Skoczylas, Joanna
name: Dziadek, Kinga
name: Zawistowski, Jerzy
Publisher: name: Multidisciplinary Digital Publishing Institute
Year: 2021

description: The aim of this study was to determine the basic chemical composition, the content of bioactive compounds and antioxidant activity in currant leaves. The leaves of black, red and white currant shrubs were collected in May, and in the beginning of June, July and August, for two years between 2018 and 2019. The proximate analysis, including dry matter, protein, fat, ash and total carbohydrates, was determined. In addition, the content of the polyphenols and the total antioxidant activity using ABTS, DPPH and FRAP assays were conducted. The highest concentration of protein was detected in the whitecurrant leaves harvested in May in both years, while the highest content of crude fat was found in the blackcurrant leaves harvested in both years, with the exception of the August harvest. Extracts from the blackcurrant leaves collected in June/July 2019 had the highest antioxidant activity that was measured by the ABTS method (about 7000 µmol Trolox/g DM) and confirmed by other methods, while extracts from the whitecurrant leaves produced from the August 2018 collection had the lowest antioxidant activity (1884 µmol Trolox/g DM). Currant leaves are a rich source of bioactive compounds and contain higher amounts of polyphenols as compared with currant fruits. These compounds may play a very important role in the risk reduction and even prevention of the most chronic non-communicable diseases. Therefore, further research is needed to identify currant leaves as a source of bioactives for functional foods and natural health products. The highest antioxidant activity was in the redcurrant leaves from all the harvest times in 2018 as measured by the ABTS and FRAP methods. On the contrary, blackcurrant leaves from all the harvest times in 2019 had the highest antioxidant activity.
Alkaff et al. (2024), Protocol for a co-design study for the development of a chronotherapeutic mobile health behaviour change intervention targeting light exposure among older adults: Supplementary material – COREQ 32-Item Checklist
Creators: name: Alkaff, Zahrah Alwi
name: Del Villar, Denz
name: Murukesu, Resshaya Roobini
name: Spitschan, Manuel
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 420302
subject: Digital health
classificationCode: 520106
subject: Psychology of ageing
classificationCode: 330405
subject: Public participation and community engagement

description: Alkaff et al. (2024), Protocol for a co-design study for the development of a chronotherapeutic mobile health behaviour change intervention targeting light exposure among older adultsSupplementary material – COREQ 32-Item Checklist
Memo from Alfonso D'Artega to the Stony Brook Community Fund, May 6, 1955
Creators: name: D'Artega, Alfonso
Publisher: name: Unknown
Year: 1955
Subjects: Stony Brook
Concerts
Correspondence
Receipts (Acknowledgments)
Checks

description: This memo is written by musician, Alfonso D'Artega, on May 6, 1955, in regards to his acknowledgment of a receipt for his check of $500.00 for the first concert of the 1955 season.
Additional file 1 of Cost-effectiveness analysis of systematic fast-track transition from oncological treatment to specialised palliative care at home for patients and their caregivers: the DOMUS trial
Creators: name: Halling, Christine Marie Bækø
name: Wolf, Rasmus Trap
name: Sjøgren, Per
name: Maase, Hans Von Der
name: Timm, Helle
name: Johansen, Christoffer
name: Kjellberg, Jakob
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1.
The rise of data-driven weather forecasting
Creators: name: Ben-Bouallegue, Zied
name: Clare, Mariana C A
name: Magnusson, Linus
name: Gascon, Estibaliz
name: Maier-Gerber, Michael
name: Janousek, Martin
name: Rodwell, Mark
name: Pinault, Florian
name: Dramsch, Jesper S
name: Lang, Simon T K
name: Raoult, Baudouin
name: Rabier, Florence
name: Chevallier, Matthieu
name: Sandu, Irina
name: Dueben, Peter
name: Chantry, Matthew
name: Pappenberger, Florian
Publisher: name: arXiv
Year: 2023
Subjects: subject: Atmospheric and Oceanic Physics (physics.ao-ph)
subject: FOS: Physical sciences

description: Data-driven modeling based on machine learning (ML) is showing enormous potential for weather forecasting. Rapid progress has been made with impressive results for some applications. The uptake of ML methods could be a game-changer for the incremental progress in traditional numerical weather prediction (NWP) known as the 'quiet revolution' of weather forecasting. The computational cost of running a forecast with standard NWP systems greatly hinders the improvements that can be made from increasing model resolution and ensemble sizes. An emerging new generation of ML models, developed using high-quality reanalysis datasets like ERA5 for training, allow forecasts that require much lower computational costs and that are highly-competitive in terms of accuracy. Here, we compare for the first time ML-generated forecasts with standard NWP-based forecasts in an operational-like context, initialized from the same initial conditions. Focusing on deterministic forecasts, we apply common forecast verification tools to assess to what extent a data-driven forecast produced with one of the recently developed ML models (PanguWeather) matches the quality and attributes of a forecast from one of the leading global NWP systems (the ECMWF IFS). The results are very promising, with comparable skill for both global metrics and extreme events, when verified against both the operational analysis and synoptic observations. Increasing forecast smoothness and bias drift with forecast lead time are identified as current drawbacks of ML-based forecasts. A new NWP paradigm is emerging relying on inference from ML models and state-of-the-art analysis and reanalysis datasets for forecast initialization and model training.
Additional file 2 of Cost-effectiveness analysis of systematic fast-track transition from oncological treatment to specialised palliative care at home for patients and their caregivers: the DOMUS trial
Creators: name: Halling, Christine Marie Bækø
name: Wolf, Rasmus Trap
name: Sjøgren, Per
name: Maase, Hans Von Der
name: Timm, Helle
name: Johansen, Christoffer
name: Kjellberg, Jakob
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 2.
Additional file 1 of Systematic genetic and proteomic screens during gametogenesis identify H2BK34 methylation as an evolutionary conserved meiotic mark
Creators: name: Crespo, Marion
name: Luense, Lacey J.
name: Arlotto, Marie
name: Jialei Hu
name: Dorsey, Jean
name: Encar García-Oliver
name: Parisha P. Shah
name: Pflieger, Delphine
name: Berger, Shelley L.
name: Govin, Jérôme
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1. Supplementary Figures and Tables.
Additional file 1 of Qualitative analysis of the coordination of major system change within the Colombian health system in response to COVID-19: study protocol
Creators: name: Turner, Simon
name: Niño, Natalia
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. Topic guide for stakeholder interviews.
Efficient and effective contour-based corner detection methods for image matching
Creators: name: Afrin, Naurin
Publisher: name: Swinburne
Year: 2024

description: This thesis aims to find the location of the corners in an image and represent them in an image matching application. The main challenge is to find the correspondences between two images under different transformations. The role of the edge detectors for detecting corners is also analysed. A method for estimating the interest region around the corner location is developed to represent the corner in an image matching framework. The research can be useful in a wide range of computer vision application such as image matching and object recognition.
Additional file 3 of Systematic genetic and proteomic screens during gametogenesis identify H2BK34 methylation as an evolutionary conserved meiotic mark
Creators: name: Crespo, Marion
name: Luense, Lacey J.
name: Arlotto, Marie
name: Jialei Hu
name: Dorsey, Jean
name: Encar García-Oliver
name: Parisha P. Shah
name: Pflieger, Delphine
name: Berger, Shelley L.
name: Govin, Jérôme
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3. MS/MS spectra of the modified histone tryptic peptides identified during yeast sporulation.
Astenus Dejean 1833
Creators: name: Ferreira, Raul Nascimento
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Astenus

description: Genus Astenus Dejean, 1833
  Astenus (Astenopleuritus) melanurus (K̡ster, 1853) Sunius melanurus K̡ster, 1853: 76
  Oliveira (1893) records this species from BraganÇa. Oliveira (1899) mentions the species as Sunius melanurus Kuster. Fuente (1922) and Seabra (1943) quotes Oliveira. Ferreira (1962) mentions this species from Portugal without locality. Gamarra & Outerelo (2020) record this species from Trás-os-Montes e Alto Douro and also from Beira Litoral,  but it needs confirmAtion, As we couLdn’t find Any other source supporting the occurrence of this species in this district.
  New data: Trás-os-Montes e Alto Douro, Vila Real, Sabrosa, S. Martinho de Anta, 2/07/1971, 1 ex., leg. R. N. Ferreira (RNFC).
 Distribution: This species is known from southern Europe, North Africa, Cyprus, Iran, Syria, and Turkey in the Palearctic Region, and also from the Oriental and Afrotropical Regions (Sch̡lke & Smetana, 2015).
  Astenus (Astenus) algarvensis Coiffait, 1969 Astenus algarvensis Coiffait, 1969: 72
 This species was described from Portugal, Algarve, Loulé, 1 ♂ (Type) and 19 specimens ♂ and ♀  (Paratypes) (col. Coiffait) (Coiffait, 1969). The var. virgo Coiffait, 1969 was also described, from Alportel. Gama et al. (2000a, b) mention the same records. Gamarra & Outerelo (2020) also recorded this species from Algarve.
 Distribution: Known only from Portugal (Sch̡lke & Smetana, 2015).
description: Published as part of Ferreira, Raul Nascimento, 2023, The genus Astenus Dejean, 1833 in the Portuguese fauna (Coleoptera: Staphylinidae: Paederinae), pp. 103-111 in Arquivos Entomolóxicos 27 on page 104, DOI: 10.5281/zenodo.13245749
Waveform Proportionality and Taylor's Law Induced by Synchronization of Periodic and Chaotic Oscillators
Creators: name: Mitsui, Yuzuru
name: Kori, Hiroshi
Publisher: name: arXiv
Year: 2023
Subjects: subject: Adaptation and Self-Organizing Systems (nlin.AO)
subject: FOS: Physical sciences

description: Taylor's law (TL), the scaling relationship between the mean and variance, has been observed in various fields. However, the underlying reasons why TL is so widely observed, why the exponents of TL are often close to 2, and the relationship between temporal and spatial TLs are not fully understood. Here, using coupled oscillator models, we analytically and numerically demonstrate that synchronization can induce TL. In particular, we show that strong synchronization leads to waveform proportionality, resulting in temporal and spatial TLs with exponent 2. Our study can help infer the existence of synchronization solely from the relationship between the mean and variance.
Athyreini Lynch Arribalzaga 1878
Creators: name: Zaragoza-Caballero, Santiago
name: Rodríguez-Mirón, Geovanni M.
name: Vega-Badillo, Viridiana
name: González-Ramírez, Mireya
name: Zurita-García, Martín L.
name: Domínguez-León, Daniel E.
name: López-Pérez, Sara
name: Gutiérrez-Carranza, Ishwari G.
name: Cifuentes-Ruiz, Paulina
name: Pérez-Hernández, Cisteil X.
name: Valle, Enya Ramírez Del
name: Gutiérrez, Nayeli
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Geotrupidae

description: Tribe Athyreini Lynch Arribálzaga, 1878
Neoathyreus granulicollis Howden, 1964. Source: Howden 1964
description: Published as part of Zaragoza-Caballero, Santiago, Rodríguez-Mirón, Geovanni M., Vega-Badillo, Viridiana, González-Ramírez, Mireya, Zurita-García, Martín L., Domínguez-León, Daniel E., López-Pérez, Sara, Gutiérrez-Carranza, Ishwari G., Cifuentes-Ruiz, Paulina, Pérez-Hernández, Cisteil X., Valle, Enya Ramírez Del & Gutiérrez, Nayeli, 2019, A checklist of the Coleoptera (Insecta) from Morelos, Mexico, pp. 1-122 in Zootaxa 4580 (1) on page 39, DOI: 10.11646/zootaxa.4580.1.1, http://zenodo.org/record/2637573
Ideals in quantales, II
Creators: name: Goswami, Amartya
Publisher: name: arXiv
Year: 2023
Subjects: subject: General Topology (math.GN)
subject: FOS: Mathematics
subject: 06F07, 54B35

description: As a natural extension of the ongoing development of a theory of ideals in commutative quantales with an identity element, this article aims to study into the analysis of certain topological properties exhibited by distinguished classes of ideals. These ideals are equipped with quantale topologies. The primary objectives encompass characterizing quantale spaces exhibiting sobriety, examining several conditions pertaining to quasi-compactness, and demonstrating that quantale spaces comprised of proper ideals adhere to the spectral properties as defined by Hochster. We introduce the notion of a strongly disconnected spaces and show that for a quantale with zero Jacobson radical, strongly disconnected quantale spaces containing all maximal ideals of the quantale imply existence of non-trivial idempotent elements in the quantale. Additionally, a sufficient criterion for establishing the connectedness of a quantale space is presented. Finally, we discuss on continuous maps between quantale spaces.
Understanding Behavioural Development of Calves in Natural Settings to Inform Calf Management
Creators: name: Whalin, Laura
name: Weary, Daniel M.
name: Von Keyserlingk, Marina A. G.
Publisher: name: Multidisciplinary Digital Publishing Institute
Year: 2021

description: One important type of animal welfare concern is “natural living” (i.e., that animals are able to express natural behaviours that are important to them, and to engage with aspects of the natural world that they find important). The aims of this narrative review were to describe the behavioural development of calves (Bos taurus) in natural settings and use this to identify characteristics of natural systems that may be important to consider relative to this natural living conception of animal welfare. At birth, calves are licked by their mothers and soon stand to suckle for colostrum, and during the milk-feeding period, calves spend much of their time lying down. In natural systems, calves perform a variety of social behaviours with herd-mates, and slowly transition from their mother’s milk to eating solid food, by gradually increasing time spent grazing and ruminating. In contrast, on most commercial dairy systems, dairy calves are removed from their mothers at birth, housed individually, fed restricted amounts of milk and weaned abruptly at a young age. The results of this review suggest that accommodating key natural behaviours, for example through the use of teat feeding of milk, social housing, and gradual weaning, can help address welfare concerns.
Astenus (Astenus) anguinus subsp. oblongicollis Koch 1940
Creators: name: Ferreira, Raul Nascimento
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Astenus
Astenus anguinus
Astenus (astenus) anguinus oblongicollis koch, 1940

description: Astenus (Astenus) anguinus oblongicollis Koch, 1940
  Sunius anguinus Baudi, 1848: 137
  Sunius oblongicollis Koch, 1940: 383
  Fuente (1922) cites Heyden (1870) as having recorded anguinus Baudi, 1848 as a variety of Astenus filiformis Latreille, 1806 from Serra do Gerês and Serra da Estrela , but there’s no trAce of those Portuguese records in thAt Heyden’s book. Drugmand & Outerelo (1997) also mention this reference. Koch (1940) described this subspecies from Lisbon. Gamarra & Outerelo (2020) report the species from Estremadura.
  New data: Minho, Braga, Vieira do Minho, Serra do Gerês, 2/07/1969, 2 ex., leg. R. N. Ferreira (RNFC). Beira Alta, Viseu, Viseu, Santos Evos, 18/04/1967, 1 ex., leg. R. N. Ferreira (RNFC). Distribution: Known only from Portugal (Sch̡lke & Smetana, 2015).
  Astenus (Astenus) bimaculatus bimaculatus (Erichson, 1840) Sunius bimaculatus Erichson, 1840: 641
  Boieiro et al. (2001) record this species from Serra da Arrábida, 19/03/1982, 3 ex. Not listed for Portugal by Sch ̡lke & Smetana (2015). Gamarra & Outerelo (2020) report it from Estremadura. Distribution: Widespread in Europe, North Africa, Afghanistan, Cyprus, Iran, Israel, Pakistan, Syria, Tajikistan, Turkey, and Uzbekistan (Sch̡lke & Smetana, 2015).
  Astenus (Astenus) estrellensis Coiffait, 1969 Astenus estrellensis Coiffait, 1969: 70
 Species described from Portugal, Beira Alta, Serra da Estrela, 1 ♂ (Type) and 2 ♂♂ and 5 ♀♀ (Paratypes) (col. Coiffait) (Coiffait, 1969) . Gamarra & Outerelo (2020) report the species from Beira Alta and also from Algarve, but this last province needs confirmAtion, As we couLdn’t find Any other source supporting the occurrence of this species there .
 Distribution: Known only from Portugal (Sch̡lke & Smetana, 2015).
  Astenus (Astenus) fageli fageli Coiffait, 1960 Astenus fageli Coiffait, 1960: 97
 Species described from Portugal, Beira Litoral, Luso, 1 ♂ (Type) (col. Fagel) (Coiffait, 1960) . Gamarra & Outerelo (2020) report this species from Beira Litoral.
 Distribution: Known only from Portugal (Sch̡lke & Smetana, 2015).
description: Published as part of Ferreira, Raul Nascimento, 2023, The genus Astenus Dejean, 1833 in the Portuguese fauna (Coleoptera: Staphylinidae: Paederinae), pp. 103-111 in Arquivos Entomolóxicos 27 on pages 104-105, DOI: 10.5281/zenodo.13245749
Terahertz chiral sub-wavelength cavities breaking time-reversal symmetry via ultra-strong light-matter interaction
Creators: name: Andberger, Johan
name: Graziotto, Lorenzo
name: Sacchi, Luca
name: Beck, Mattias
name: Scalari, Giacomo
name: Faist, Jérôme
Publisher: name: arXiv
Year: 2023
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We demonstrate terahertz chiral sub-wavelength cavities that break time-reversal symmetry by coupling the degenerate linearly polarized modes of two orthogonal sets of nano-antenna arrays using the inter-Landau level transition of a two-dimensional electron gas in a perpendicular magnetic field, realizing normalized light-matter coupling rates up to $Ω_R/ω_{\mathrm{cav}} = 0.78$ with a dispersion that is modified by the parasitic capacitive coupling between the orthogonal antennas. The deep sub-wavelength confinement of the nano-antennas means that the ultra-strong coupling regime can be reached even with a small number of carriers compared to Fabry-Perot cavities, making it viable to be used with a variety of 2D materials. The non-degenerate circularly polarized ground state was only obtained after carefully optimizing the optical design to minimize the parasitic coupling to linearly polarized light.
description: 17 pages, 8 figures
Additional file 3 of Qualitative analysis of the coordination of major system change within the Colombian health system in response to COVID-19: study protocol
Creators: name: Turner, Simon
name: Niño, Natalia
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3. Funding Letter from Minciencias.
Additional file 2 of Qualitative analysis of the coordination of major system change within the Colombian health system in response to COVID-19: study protocol
Creators: name: Turner, Simon
name: Niño, Natalia
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2. Ethics Approval Letter Universidad de los Andes.
On the mechanisms of infrared stimulation in auditory neurons
Creators: name: Brown, William Gilmour Alexander
Publisher: name: Swinburne
Year: 2024

description: Infrared neural stimulation (INS) is an emerging technique for nerve stimulation that has the potential to improve the performance of bionic devices. Despite showing promise for use in auditory prostheses (cochlear implants), the mechanisms of INS in the cochlea are not well understood. This thesis outlines a detailed investigation into the mechanisms of infrared stimulation of auditory neurons. Experimental studies were combined with mathematical modelling to characterise the electrical behaviour of auditory neurons in response to infrared illumination. Results suggest that the threshold laser energy required for infrared stimulation in auditory neurons is higher than previously reported.
title: Single crystal plasticity theories predicting bounded lattice rotation under simple shear deformation
Creators: name: Broese, Carsten
name: Tsakmakis, Charalampos
Publisher: name: Walter de Gruyter
Year: 2025

description: Up to now, models for single crystal plasticity predict unbounded lattice rotations under simple shear. Asaro et al. proposed a model that predicts bounded rotations as long as the viscosity parameters are appropriately chosen. In every case, ideal plasticity models imply unbounded lattice rotations. Hence, it leads to the question whether one can develop a single crystal plasticity theory exhibiting hardening effects, which can predict bounded lattice rotations dependent on the choice of the hardening parameters. It is shown that this is possible by assuming latent hardening to apply.