cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Australoluciola baduria Ballantyne & Lambkin 2013, sp. nov.
Creators: name: Ballantyne, Lesley A.
name: Lambkin, Christine L.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lampyridae
Australoluciola
Australoluciola baduria

description: Australoluciola baduria sp. nov. [Figs 35–37] Holotype. Male. INDONESIA (as Dutch New Guinea): 1.45S, 136.08E Japen Island Mt Baduri 1000 feet viii.1938 LEC (NHML). Paratypes (14). Same locality as holotype, 11 males. Japen Island: Mania-Undei 500 feet x.1938 LEC male (BPBM); Camp 2 Mt Eiori 2000 feet x 1938 LEC male; camp 3 central range Mt Oud 3000 feet xi.1938 LEC 2 males (NHML). Diagnosis. Pronotum orange, elytra dark brown; distinguished from all other Australoluciola with similar dorsal colouration by the swollen and slightly curved femora 3 and the curved tibiae 3 in the male (Fig. 37); MPP longer than wide, considerably longer than the rounded PLP of V7. Male. 4.9–6.1 mm long. Colour: pronotum orange; MN creamy white; MS dusky brown; elytra very dark brown almost black; all of ventral surface dark brown except for white LOs in V6, 7; T7, 8 pale semitransparent, remainder of tergites brown; dorsally reflexed margins of V6, 7 pale. Pronotum: 1.2–1.5 mm wide, 1.2–1.5 mm long; W/L = 2.4–3.0; midanterior margin broadly rounded, scarcely projecting beyond angulate anterolateral corners; lateral margins slightly divergent posteriorly (C slightly> B); punctures contiguous or separated by up to their width. Elytra: pin punctate, often irregularly so along margins, punctures separated by their width. Abdomen (Figs 35, 36): V3, V4 posterior margins not recurved; posterior margin of V7 trisinuate, LOs in V7 occupying most of the area and reaching sides but not posterior margin; MPP apex slightly produced, L>W; PLP rounded, not produced as far as MPP. T8: Ventral surface with anterior margins of lateral ridges effaced; no flanges. Aedeagus (similar to Figs 39–41): anterior portion of ML slender and prolonged; lateral margins of LL straight, tapering to apex; apices of LL narrowly rounded; L/W=5.0. Aedeagal sheath similar to Figs 42, 43. Female, Larva. Unknown. Etymology. The specific name is regarded as a noun in apposition, latinised from, and highlighting, the type locality. Remarks. Two species of Australoluciola bearing expanded hind femora and curved tibiae, (a feature seen in most species of Pyrophanes), lack the MFC (seen in all species of Pyrophanes). The possible function of such male leg modifications is discussed subsequently.
description: Published as part of Ballantyne, Lesley A. & Lambkin, Christine L., 2013, Systematics and Phylogenetics of Indo-Pacific Luciolinae Fireflies (Coleoptera: Lampyridae) and the Description of new Genera, pp. 1-162 in Zootaxa 3653 (1) on pages 48-50, DOI: 10.11646/zootaxa.3653.1.1, http://zenodo.org/record/5265340
Lentilactobacillus kefiri Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O'Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer 2020, COMB. NOV.
Creators: name: Zheng, Jinshui
name: Wittouck, Stijn
name: Salvetti, Elisa
name: Franz, Charles M. A. P.
name: Harris, Hugh M. B.
name: Mattarelli, Paola
name: O'Toole, Paul W.
name: Pot, Bruno
name: Vandamme, Peter
name: Walter, Jens
name: Watanabe, Koichi
name: Wuyts, Sander
name: Felis, Giovanna E.
name: Gänzle, Michael G.
name: Lebeer, Sarah
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Bacteria
Firmicutes
Bacilli
Lactobacillales
Lactobacillaceae
Lentilactobacillus
Lentilactobacillus kefiri

description: DESCRIPTIONOF LENTILACTOBACILLUS KEFIRI COMB. NOV.
Lentilactobacillus kefiri (ke.fi’ri. N.L. gen. n. kefiri, of kefir, referring to the source of isolation).
Basonym: Lactobacillus kefir Kandler and Kunath 1983, 672 VL
Characteristics are described in [332]. Growth is observed at 15 but not at 45 °C; the genome size of the type strain is 2.23 Mbp. The mol% G+C content of DNA is 41.7.
Isolated from kefir as part of the core microbiota. Thetypestrainis A/KT=ATCC 35411 T =CIP 103006 T = DSM 20587 T =JCM 5818 T =LMG 9480 T.
Genome sequence accession number: AYYV00000000.
16S rRNA gene accession number: AJ621553.
description: Published as part of Zheng, Jinshui, Wittouck, Stijn, Salvetti, Elisa, Franz, Charles M. A. P., Harris, Hugh M. B., Mattarelli, Paola, O'Toole, Paul W., Pot, Bruno, Vandamme, Peter, Walter, Jens, Watanabe, Koichi, Wuyts, Sander, Felis, Giovanna E., Gänzle, Michael G. & Lebeer, Sarah, 2020, A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae, pp. 2782-2858 in International Journal of Systematic and Evolutionary Microbiology 70 on page 2845, DOI: 10.1099/ijsem.0.004107, http://zenodo.org/record/4730536
title: Оптимизация выбора технических и технологических решений (на базе систем водоотведения)
Creators: name: ELS IPR BOOKS
Publisher: name: Донской государственный технический университет
Year: 2018

description: Изложена методология выбора технических и технологических решений по оптимизации вариантов ретехнологизации действующих систем ВиВ на базе анализа их фактического состояния и режимов работы. Подробно описан механизм протекания химических реакций в сточных водах при их транспортировании, а также приведены схемы и методы очистки сточных вод. Предназначено для магистров и иностранных студентов всех форм обучения по направлению 08.03.01 «Строительство. Профиль подготовки «Водоснабжение и водоотведение».
Observation of conformal symmetry breaking and scale invariance in expanding Fermi gases
Creators: name: Elliott, E.
name: Joseph, J. A.
name: Thomas, J. E.
Publisher: name: arXiv
Year: 2013
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: FOS: Physical sciences

description: We precisely test scale invariance and local thermal equilibrium in the hydrodynamic expansion of a Fermi gas of atoms as a function of interaction strength. After release from an anisotropic optical trap, we observe that a resonantly interacting gas obeys scale-invariant hydrodynamics, where the mean square cloud size $\langle{\mathbf{r}}^2\rangle=\langle x^2+y^2+z^2\rangle$ expands ballistically (like a noninteracting gas) and the energy-averaged bulk viscosity is consistent with zero, $0.005(0.016)\,\hbar\,n$, with $n$ the density. In contrast, the aspect ratios of the cloud exhibit anisotropic "elliptic" flow with an energy-dependent shear viscosity. Tuning away from resonance, we observe conformal symmetry breaking, where $\langle{\mathbf{r}}^2\rangle$ deviates from ballistic flow.
description: 11 pages, 8 figures
Self Organizing Maps to efficiently cluster and functionally interpret protein conformational ensembles
Creators: name: Fraccalvieri, Domenico
name: Bonati, Laura
name: Stella, Fabio
Publisher: name: arXiv
Year: 2013
Subjects: subject: Computational Engineering, Finance, and Science (cs.CE)
subject: Biomolecules (q-bio.BM)
subject: FOS: Computer and information sciences
subject: FOS: Biological sciences

description: An approach that combines Self-Organizing maps, hierarchical clustering and network components is presented, aimed at comparing protein conformational ensembles obtained from multiple Molecular Dynamic simulations. As a first result the original ensembles can be summarized by using only the representative conformations of the clusters obtained. In addition the network components analysis allows to discover and interpret the dynamic behavior of the conformations won by each neuron. The results showed the ability of this approach to efficiently derive a functional interpretation of the protein dynamics described by the original conformational ensemble, highlighting its potential as a support for protein engineering.
description: In Proceedings Wivace 2013, arXiv:1309.7122
Nonlinear Shear Wave in a Non Newtonian Visco-elastic Medium
Creators: name: Janaki, D. Banerjee M. S.
name: Chakrabarti, N.
name: Chaudhuri, M.
Publisher: name: arXiv
Year: 2013
Subjects: subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: An analysis of nonlinear transverse shear wave has been carried out on non-Newtonian viscoelastic liquid using generalized hydrodynamic(GH) model. The nonlinear viscoelastic behavior is introduced through velocity shear dependence of viscosity coefficient by well known Carreau -Bird model. The dynamical feature of this shear wave leads to the celebrated Fermi-Pasta-Ulam (FPU) problem. Numerical solution has been obtained which shows that initial periodic solutions reoccur after passing through several patterns of periodic waves. A possible explanation for this periodic solution is given by constructing modified Korteweg de Vries (mKdV) equation. This model has application from laboratory to astrophysical plasmas as well as biological systems.
description: 5 pages, 2 figures
Spitzer, Gaia, and the Potential of the Milky Way
Creators: name: Price-Whelan, Adrian M.
name: Johnston, Kathryn V.
Publisher: name: arXiv
Year: 2013
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Near-future data from ESA's Gaia mission will provide precise, full phase-space information for hundreds of millions of stars out to heliocentric distances of ~10 kpc. This "horizon" for full phase-space measurements is imposed by the Gaia parallax errors degrading to worse than 10%, and could be significantly extended by an accurate distance indicator. Recent work has demonstrated how Spitzer observations of RR Lyrae stars can be used to make distance estimates accurate to 2%, effectively extending the Gaia, precise-data horizon by a factor of ten in distance and a factor of 1000 in volume. This Letter presents one approach to exploit data of such accuracy to measure the Galactic potential using small samples of stars associated with debris from satellite destruction. The method is tested with synthetic observations of 100 stars from the end point of a simulation of satellite destruction: the shape, orientation, and depth of the potential used in the simulation are recovered to within a few percent. The success of this simple test with such a small sample in a single debris stream suggests that constraints from multiple streams could be combined to examine the Galaxy's dark matter halo in even more detail --- a truly unique opportunity that is enabled by the combination of Spitzer and Gaia with our intimate perspective on the Galaxy.
description: 6 pages, 5 figures; accepted for publication in ApJ Letters
A Multicriteria Assessment of Vulnerability to Extreme Rainfall Events on the Pacific Coast of Mexico
Creators: name: Abril Montijo-Galindo
name: Ruiz-Luna, Arturo
name: Lozano, Miguel Betancourt
name: Hernández-Guzmán, Rafael
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Neuroscience
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: The likely increase in extreme rainfall events (ERE) due to climate change, particularly associated with tropical storms and hurricanes, threatens coastal communities worldwide. A model based on socioeconomic and environmental indicators was used to assess and categorize vulnerability to ERE at the municipal level, in Sinaloa, a coastal state of northwest Mexico. Coastal vulnerability was assessed based on a system of indicators, integrated into five criteria within two higher categories: response capacity (Economic conditions, Social development, and Living standards), and severity (Geographic exposure and Risk intensifiers). From a preliminary set of 25 indicators, three of them were selected by criterion using the Delphi method, and their values were later standardized from 0 (low) to 1 (high) on a vulnerability scale. Both criteria and indicators were weighted following an analytical hierarchical process (AHP), resulting in the main determinants of vulnerability being Geographic exposure (0.43) and Economic conditions (0.34). This first approach to a vulnerability assessment using standardized values showed that Guasave (to the north) and Escuinapa (to the south) are the most vulnerable municipalities, scoring >9.0 (with 15 being the maximum score). In contrast, Culiacán and San Ignacio, both central municipalities, ranked as the least vulnerable (<5.5). A further analysis using the integral vulnerability index (IVI) corroborated Guasave (3.73) and Escuinapa (3.15) as the most vulnerable, discarding latitudinal changes as a possible promotor of vulnerability. Although the coastal population was the main determinant of vulnerability (median = 0.57), other indicators associated with severity as well as response capacity were responsible for the increase in IVI scores. This study highlights the need for an integrated vulnerability analysis to support public policies and the decision-making process to protect coastal communities from environmental climate change.
GPU-powered Simulation Methodologies for Biological Systems
Creators: name: Besozzi, Daniela
name: Caravagna, Giulio
name: Cazzaniga, Paolo
name: Nobile, Marco
name: Pescini, Dario
name: Re, Alessandro
Publisher: name: arXiv
Year: 2013
Subjects: subject: Computational Engineering, Finance, and Science (cs.CE)
subject: Distributed, Parallel, and Cluster Computing (cs.DC)
subject: FOS: Computer and information sciences

description: The study of biological systems witnessed a pervasive cross-fertilization between experimental investigation and computational methods. This gave rise to the development of new methodologies, able to tackle the complexity of biological systems in a quantitative manner. Computer algorithms allow to faithfully reproduce the dynamics of the corresponding biological system, and, at the price of a large number of simulations, it is possible to extensively investigate the system functioning across a wide spectrum of natural conditions. To enable multiple analysis in parallel, using cheap, diffused and highly efficient multi-core devices we developed GPU-powered simulation algorithms for stochastic, deterministic and hybrid modeling approaches, so that also users with no knowledge of GPUs hardware and programming can easily access the computing power of graphics engines.
description: In Proceedings Wivace 2013, arXiv:1309.7122
Microhydromys richardsoni Tate and Archbold 1941
Creators: name: Musser, Guy G.
name: Carleton, Michael D.
Publisher: name: Zenodo
Year: 1993
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Microhydromys
Microhydromys richardsoni

description: Microhydromys richardsoni Tate and Archbold, 1941. Am. Mus. Novit., 1101:2. TYPE LOCALITY: New Guinea, Irian Jaya, Idenburg River, 4 km SW Bernhard Camp, 850 m. DISTRIBUTION: New Guinea; scattered localities in hill forest from type locality east to Sogeri in Port Moresby region (see map in Flannery, 19906:184). COMMENTS: Known only by four specimens (Flannery, 1989). Distributional and biological data summarized by Flannery (1990b:184). Microhydromys richardsoni possesses the primitive pattern of the cephalic arterial circulation, a conformation shared with species of Crossomys, Hydromys, and Parahydromys, but not with Leptomys or the other genera of shrew mice (Mayermys, Neohydromys, and Pseudohydromys).
description: Published as part of Guy G. Musser & Michael D. Carleton, 1993, Order Rodentia - Family Muridae, pp. 501-755 in Mammal Species of the World (2 nd Edition), Washington and London :Smithsonian Institution Press on page 620, DOI: 10.5281/zenodo.7353098
description: {"references": ["Flannery, T. F. 1990 b. Mammals of New Guinea. Robert Brown and Associates, 439 pp."]}
(Re-)Créer une liste de publications à partir de l'Archive ouverte UNIGE
Creators: name: Claivaz, Jean-Blaise
name: Donzé, Dimitri
name: Muller, Floriane
Publisher: name: Zenodo
Year: 2023
Subjects: Archive ouverte UNIGE
liste bibliographique
page web personnelle

description: Présentation utilisée lors du rendez-vous de l'information scientifique en 30 minutes organisé par la Bibliothèque de l'Université de Genève le 23 mars 2023 consacré à l'Archive ouverte UNIGE. Objectif : Afficher une liste bibliographique dynamique sur une page web à partir des publications de l'Archive ouverte UNIGE Description : L'Archive ouverte UNIGE est le serveur institutionnel dans lequel tous les collaborateurs et toutes les collaboratrices de l'institution doivent déposer une copie de leurs publications. Lancée en 2008, elle contient désormais plus de 100'000 documents. Un générateur de bibliographie permet de réutiliser les références des publications sur des pages web externes de façon à ce que les mises à jour (nouvelles publications, corrections) soit faites automatiquement.
 Le lancement de la nouvelle Archive ouverte en mars 2023 apporte des changements et des améliorations dans ce générateur. Contenu: L'Archive ouverte en bref Le nouveau générateur de bibliographie Intégrer sa bibliographie sur sa page web Questions - Réponses
title: Организационное и правовое обеспечение информационной безопасности
Creators: name: ELS IPR BOOKS
Publisher: name: Донской государственный технический университет
Year: 2017

description: Содержатся сведения об основах организационного и правового обеспечения информационной безопасности, основных нормативных правовых актах в области обеспечения информационной безопасности, а также нормативных методических документах ФСБ и ФСТЭК России в области защиты информации. Особое внимание уделено правовым основам организации защиты государственной тайны и конфиденциальной информации, задачам органов защиты государственной тайны и служб защиты информации на предприятиях. Описывается организация работы и нормативные правовые акты и стандарты по лицензированию деятельности в области обеспечения защиты государственной тайны, технической защиты конфиденциальной информации, аттестации объектов информатизации и сертификации средств защиты информации. Предназначено для студентов, изучающих основы правового регулирования общественных отношений, складывающихся в современной информационной сфере, а также нормативно-правовую базу информационной безопасности.
Evolution of elliptic and triangular flow as a function of beam energy in a hybrid model
Creators: name: Auvinen, Jussi
name: Petersen, Hannah
Publisher: name: arXiv
Year: 2013
Subjects: subject: Nuclear Theory (nucl-th)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: Elliptic flow has been one of the key observables for establishing the finding of the quark-gluon plasma (QGP) at the highest energies of Relativistic Heavy Ion Collider (RHIC) and the Large Hadron Collider (LHC). As a sign of collectively behaving matter, one would expect the elliptic flow to decrease at lower beam energies, where the QGP is not produced. However, in the recent RHIC beam energy scan, it has been found that the inclusive charged hadron elliptic flow changes relatively little in magnitude in the energies between 7.7 and 39 GeV per nucleon-nucleon collision. We study the collision energy dependence of the elliptic and triangular flow utilizing a Boltzmann + hydrodynamics hybrid model. Such a hybrid model provides a natural framework for the transition from high collision energies, where the hydrodynamical description is essential, to smaller energies, where the hadron transport dominates. This approach is thus suitable to investigate the relative importance of these two mechanisms for the production of the collective flow at different values of beam energy. Extending the examined range down to 5 GeV per nucleon-nucleon collision allows also making predictions for the CBM experiment at FAIR.
description: 8 pages, 3 figures. Talk in FAIRNESS 2013 workshop, September 2013
Micromys Dehne 1841
Creators: name: Musser, Guy G.
name: Carleton, Michael D.
Publisher: name: Zenodo
Year: 1993
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Micromys

description: Micromys Dehne, 1841. Micromys agilis, Ein Neues Säugetier der Fauna von Dresden, p. 1. TYPE SPECIES: Micromys agilis Dehne, 1841 (= Mus minitus Pallas, 1771). COMMENTS: Only one extant species is recognized by most workers, but at least five others are documented by Miocene (Storch, 1987) and Pliocene (Weerd, 1979) fossils. Whether the extant samples represent one or more species has yet to be resolved by critical systematic revision.
description: Published as part of Guy G. Musser & Michael D. Carleton, 1993, Order Rodentia - Family Muridae, pp. 501-755 in Mammal Species of the World (2 nd Edition), Washington and London :Smithsonian Institution Press on page 620, DOI: 10.5281/zenodo.7353098
description: {"references": ["Pallas, P. S. 1771 - 1776. Reise durch verschiedene Provinzen des Russischen Reichs. St. Petersbourg, 3 vol.", "Storch, G. 1987. The Neogene mammalian faunas of Ertemte and Harr Obo in Inner Mongolia (Nei Mongol), China. -- 7. Muridae (Rodentia). Senckenbergiana Lethaea, 67: 401 - 431.", "van de Weerd, A. 1979. Early Ruscinian rodents and lagomorphs (Mammalia) from the lignites near Ptolemais (Macedonia, Greece). I and II. Proceedings of the Koninklijke Nederlandse Akademie van Wetenschappen, ser. B, 82: 127 - 154."]}
Individual project on theme "Formica L" (MOOC: CompTech in biology)
Creators: name: Kolotilin Vitaliy
Publisher: name: Zenodo
Year: 2020

description: Данный кейс является результатом реализации индивидуального проекта Колотилина Виталия по теме "Formica L" в рамках онлайн курса "Компьютерные технологии в биологии" (автор – А.В. Ваганов) (https://stepik.org/course/60859/promo)
Semileptonic Kaon Decay in Staggered Chiral Perturbation Theory
Creators: name: Bernard, C.
name: Bijnens, J.
name: Gámiz, E.
Publisher: name: arXiv
Year: 2013
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The determination of $\vert V_{us}\vert$ from kaon semileptonic decays requires the value of the form factor $f_+(q^2=0)$, which can be calculated precisely on the lattice. We provide the one-loop partially quenched staggered chiral perturbation theory expressions that may be employed to analyze staggered simulations of $f_+(q^2)$ with three light flavors. We consider both the case of a mixed action, where the valence and sea sectors have different staggered actions, and the standard case where these actions are the same. The momentum transfer $q^2$ of the form factor is allowed to have an arbitrary value. We give results for the generic situation where the $u$, $d$, and $s$ quark masses are all different, $N_f=1+1+1$, and for the isospin limit, $N_f=2+1$. The expression we obtain for $f_+(q^2)$ is independent of the mass of the (valence) spectator quark. In the limit of vanishing lattice spacing, our results reduce to the one-loop continuum partially quenched expression for $f_+(q^2)$, which has not previously been reported in the literature for the $N_f=1+1+1$ case. Our expressions have already been used in staggered lattice analyses of $f_+(0)$, and should prove useful in future calculations as well.
description: 33 pages, 5 figures; v2: some referencing changed
Lentilactobacillus otakiensis OTAKIENSIS 2020, COMB. NOV.
Creators: name: Zheng, Jinshui
name: Wittouck, Stijn
name: Salvetti, Elisa
name: Franz, Charles M. A. P.
name: Harris, Hugh M. B.
name: Mattarelli, Paola
name: O'Toole, Paul W.
name: Pot, Bruno
name: Vandamme, Peter
name: Walter, Jens
name: Watanabe, Koichi
name: Wuyts, Sander
name: Felis, Giovanna E.
name: Gänzle, Michael G.
name: Lebeer, Sarah
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Bacteria
Firmicutes
Bacilli
Lactobacillales
Lactobacillaceae
Lentilactobacillus
Lentilactobacillus otakiensis

description: DESCRIPTIONOF LENTILACTOBACILLUS OTAKIENSIS COMB. NOV.
Lentilactobacillus otakiensis (o.ta.ki.en’sis. N.L. masc. adj. otakiensis from Otaki, the village in Japan, from where the type strain was isolated).
Basonym: Lactobacillus otakiensis Watanabe et al. 2009, 758 VP
Physiologicalcharacteristics and originare similar to L. kisonensis [333]. The genome size of the type strain is 2.35 Mbp. The mol% G+C content of DNA is 42.4.
Isolated from sunki, a fermented turnip product and from kefir.The type strain is
YIT
11163 T =DSM 19908 T =JCM15040T=NRIC 0742T.
Genome sequence accession number: AZED00000000.
16S rRNA gene accession number: AB366386.
description: Published as part of Zheng, Jinshui, Wittouck, Stijn, Salvetti, Elisa, Franz, Charles M. A. P., Harris, Hugh M. B., Mattarelli, Paola, O'Toole, Paul W., Pot, Bruno, Vandamme, Peter, Walter, Jens, Watanabe, Koichi, Wuyts, Sander, Felis, Giovanna E., Gänzle, Michael G. & Lebeer, Sarah, 2020, A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae, pp. 2782-2858 in International Journal of Systematic and Evolutionary Microbiology 70 on page 2845, DOI: 10.1099/ijsem.0.004107, http://zenodo.org/record/4730536
(Re-)Créer une liste de publications à partir de l'Archive ouverte UNIGE
Creators: name: Claivaz, Jean-Blaise
name: Donzé, Dimitri
name: Muller, Floriane
Publisher: name: Zenodo
Year: 2023
Subjects: Archive ouverte UNIGE
liste bibliographique
page web personnelle

description: Présentation utilisée lors des rendez-vous de l'information scientifique en 30 minutes organisés par la Bibliothèque de l'Université de Genève en mars et avril 2023, consacrés à l'Archive ouverte UNIGE. Objectif : Afficher une liste bibliographique dynamique sur une page web à partir des publications de l'Archive ouverte UNIGE Description : L'Archive ouverte UNIGE est le serveur institutionnel dans lequel tous les collaborateurs et toutes les collaboratrices de l'institution doivent déposer une copie de leurs publications. Lancée en 2008, elle contient désormais plus de 100'000 documents. Un générateur de bibliographie permet de réutiliser les références des publications sur des pages web externes de façon à ce que les mises à jour (nouvelles publications, corrections) soit faites automatiquement.
 Le lancement de la nouvelle Archive ouverte en mars 2023 apporte des changements et des améliorations dans ce générateur. Contenu: L'Archive ouverte en bref Le nouveau générateur de bibliographie Intégrer sa bibliographie sur sa page web Questions - Réponses
The role of FOXM1 and its cofactors HMGA1 and HMGN1 in breast cancer progression
Creators: name: Yao, Catherine
Publisher: name: Imperial College London
Year: 2018

description: FOXM1 is a potent oncogenic transcription factor that plays essential roles in multiple hallmarks of cancer progression, thus having impacts on tumour initiation, invasion, angiogenesis, cancer stemness and drug sensitivity. Likewise, high mobility group proteins, HMGA1 and HMGN1 are also involved in tumorigenic and metastatic processes in cancer. The human protein-protein interactions prediction database has reported the potential interactions between these proteins, but no further experimental evidence to confirm and characterise this link. In my project, I demonstrated that FOXM1 binds to HMGA1 or HMGN1 as protein-protein complex, and such interactions affect the transcriptional regulation of KIF20A and SQSTM1/p62. Disruption of the complex or their protein expression levels significantly affects drug sensitivity, cell migration and invasion in breast cancer cells. Apart from the essential roles of HMGA1 and HMGN1 in DNA repair mechanisms, they influence these malignant processes may partially through regulating FOXM1 activities. Thus, the functions of these FOXM1’s transcriptional targets, KIF20A and p62 were further examined. The results showed the p62 is involved in modulating angiogenic and metastatic processes in breast cancer as silencing of p62 significantly attenuated tumour-induced angiogenesis and cell migration in zebrafish. Furthermore, KIF20A is a novel target which KIF20A inhibition increased drug sensitivity and reduced cell migration, invasion and mammosphere formation. In addition, the new KIF20A inhibitor, BKS0349 compound offers a viable therapeutic option for cancer treatment in future. In summary, my results have established a potential mechanism underlying the interactions between FOXM1, HMGA1 and HMGN1 in breast cancer cells. Collectively, these findings strengthen our current understanding of the oncogenic protein FOXM1-mediated cancer progression and provide new insights into cancer diagnosis and treatment.
Epistemic Restrictions in Hilbert Space Quantum Mechanics
Creators: name: Griffiths, Robert B.
Publisher: name: arXiv
Year: 2013
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: A resolution of the quantum measurement problem(s) using the consistent histories interpretation yields in a rather natural way a restriction on what an observer can know about a quantum system, one that is also consistent with some results in quantum information theory. This analysis provides a quantum mechanical understanding of some recent work that shows that certain kinds of quantum behavior are exhibited by a fully classical model if by hypothesis an observer's knowledge of its state is appropriately limited.
description: Minor revisions. Agrees pretty much with published version
An ensemble approach to the study of the emergence of metabolic and proliferative disorders via Flux Balance Analysis
Creators: name: Damiani, Chiara
name: Colombo, Riccardo
name: Molinari, Sara
name: Pescini, Dario
name: Gaglio, Daniela
name: Vanoni, Marco
name: Alberghina, Lilia
name: Mauri, Giancarlo
Publisher: name: arXiv
Year: 2013
Subjects: subject: Computational Engineering, Finance, and Science (cs.CE)
subject: Molecular Networks (q-bio.MN)
subject: FOS: Computer and information sciences
subject: FOS: Biological sciences

description: An extensive rewiring of cell metabolism supports enhanced proliferation in cancer cells. We propose a systems level approach to describe this phenomenon based on Flux Balance Analysis (FBA). The approach does not explicit a cell biomass formation reaction to be maximized, but takes into account an ensemble of alternative flux distributions that match the cancer metabolic rewiring (CMR) phenotype description. The underlying concept is that the analysis the common/distinguishing properties of the ensemble can provide indications on how CMR is achieved and sustained and thus on how it can be controlled.
description: In Proceedings Wivace 2013, arXiv:1309.7122
Various Scattering Properties of a New PT-symmetric non-Hermitian potential
Creators: name: Ghatak, Ananya
name: Mandal, Raka Dona Ray
name: Mandal, Bhabani Prasad
Publisher: name: arXiv
Year: 2013
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We complexify a 1-d potential which exhibits bound, reflecting and free states to study various properties of a non-Hermitian system. This potential turns out a PT-symmetric non-Hermitian potential when one of the parameters becomes imaginary. For one PT-symmetric case we have entire real bound state spectrum. Explicit scattering states are constructed to show reciprocity at certain discrete values of energy even though the potential is not parity symmetric. Coexistence of deep energy minima of transmissivity with the multiple spectral singularities (MSS) is observed. We further show that this potential becomes invisible from left (or right) at certain discrete energies. The penetrating states in the other PT-symmetric configuration are always reciprocal even though it is PT-invariant and no spectral singularity (SS) is present in this case. Presence of MSS and reflectionlessness are also discussed for the free states in the later case.
description: 17 pages, 6 figures
Millardia Thomas 1911
Creators: name: Musser, Guy G.
name: Carleton, Michael D.
Publisher: name: Zenodo
Year: 1993
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Millardia

description: Millardia Thomas, 1911. J. Bombay Nat. Hist. Soc., 20:998. TYPE SPECIES: Golunda meltada Gray, 1837. SYNONYMS: Grypomys, Guyia, Millardomys. COMMENTS: Listed as a distinct genus by Ellerman in 1941, but later as a subgenus of Rattus (Ellerman, 1961). By 1969, Millardia was again treated as a genus and thought to be closely related to the Indian Cremnomys (Misonne, 1969). Subsequent analyses of morphological features and particularly chromosomal traits has demonstrated the great phylogenetic distance between Rattus and Millardia (Gadi and Sharma, 1983; Mishra and Dhandra, 1975; Raman and Sharma, 1977). Cytogenetic analyses resulted in a phylogenetic hypothesis isolating Millardia and Cremnomys from other Asian genera (Gadi and Sharma, 1983). Two species of Millardia, until 1982 thought to be strictly an Asian genus, were recorded from the Pliocene of Ethiopia (Sabatier, 1982). One of the species is apparently a Millardia but the other was reidentified as an Acomys (Denys, 1990).
description: Published as part of Guy G. Musser & Michael D. Carleton, 1993, Order Rodentia - Family Muridae, pp. 501-755 in Mammal Species of the World (2 nd Edition), Washington and London :Smithsonian Institution Press on page 621, DOI: 10.5281/zenodo.7353098
description: {"references": ["Gray, J. E. 1837 [1838]. On a new species of paradoxure (Paradoxurus derbianus) with remarks on some Mammalia recently purchased by the British Museum, and characters of the new species. Proceedings of the Zoological Society of London, 1837: 67.", "Ellerman, J. R. 1961. Rodentia. Volume 3, in The fauna of India including Pakistan, Burma and Ceylon. Mammalia. Second ed. Manager of Publications, Zoological Survey of India, Calcutta, vol. 3 (in 2 parts), 1: 1 - 482; 2: 483 - 884.", "Misonne, X. 1969. African and Indo-Australian Muridae: Evolutionary trends. Annales Musee Royal de l'Afrique Centrale, Tervuren, Belgique, Serie IN- 8, Sciences Zoologiques, 172: 1 - 219.", "Gadi, I. K., and T. Sharma. 1983. Cytogenetic relationships in Rattus, Cremnomys, Millardia, Nesokia and Bandicota. Genetica, 61: 21 - 40.", "Raman, R., and T. Sharma. 1977. Karyotype evolution and speciation in genus Rattus Fischer. Journal of Scientific and Industrial Research, 36: 385 - 404.", "Sabatier, M. 1982. Les rongeurs du site Pliocene a hominides de Hadar (Ethiopie). Palaeovertebrata, 12 (1): 1 - 56."]}
God's presence within his absence : the theological aesthetics of Eberhard Jüngel
Creators: name: Howell, Charles Michael
Publisher: name: The University of St Andrews
Year: 2024
Subjects: Eberhard Jüngel
Theological aesthetics
Hermeneutical theology
Systematic theology
Trinitarian theology

description: This thesis is the first concentrated work on the theological aesthetics of Eberhard Jüngel. The project is driven by Jüngel’s claim that “revelation is by definition an aesthetic event.” The particular aim of the work is to discern the meaning of “aesthetic” in this claim. It argues that “aesthetic” has three primary meanings: it designates a theory of perception; it characterizes a category of freedom; and it marks a distinction between aesthetic categories of worldly beauty and God’s glory. This work explains that the primary significance of aesthetics is to serve Jüngel’s radical claim that “humans can be human without God” by offering a non-theological source for existential meaning. This significance parallels a theological use relating to the aesthetic nature of God’s self-revelation. The two realms—anthropology and theology—are represented by the aesthetic distinction between beauty and glory. Beauty pertains to aesthetic events of the world; glory, to aesthetics events of God’s presence. Subsequently, this work is divided into two sections. The first focuses on the meaning to be had in the space of Jüngel’s anthropology. This topic is presented by analyzing in perceptions of beauty (Chapter 2), the freedom of play (Chapter 3), and the unique phenomenon of art (Chapter 4). The second section focuses on glory as the theological correspondence to beauty. Here, it is argued that God’s glory is the presence of his ontological unity (Chapter 5), that this unity is perceived in events of revelation (6), and that this unity is shared among believers in the activity of worship (Chapter 7). The conclusion (Chapter 8) shows that beauty confronts glory eschatologically, and that beauty disintegrates in the light of glory. It also highlights areas where an aesthetic interpretation of Jüngel resolves criticisms within the secondary literature, and highlights possible ways to develop Jüngel’s aesthetics.
Deterministically Charged Quantum Dots in Photonic Crystal Nanoresonators for Efficient Spin-Photon Interfaces
Creators: name: Lagoudakis, Konstantinos G.
name: Fischer, Kevin
name: Sarmiento, Tomas
name: Majumdar, Arka
name: Rundquist, Armand
name: Lu, Jesse
name: Bajcsy, Michal
name: Vučković, Jelena
Publisher: name: arXiv
Year: 2013
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We demonstrate a novel method for deterministic charging of InAs quantum dots embedded in photonic crystal nanoresonators using a unique vertical p-n-i-n junction within the photonic crystal membrane. Charging is confirmed by the observation of Zeeman splitting for magnetic fields applied in the Voigt configuration. Spectrally resolved photoluminescence measurements are complemented by polarization resolved studies that show the precise structure of the Zeeman quadruplet. Integration of quantum dots in nanoresonators strongly enhances far-field collection efficiency and paves the way for the exploitation of enhanced spin-photon interactions for fabrication of efficient quantum nodes in a scalable solid state platform.
Australoluciola maxima Ballantyne & Lambkin 2013, sp. nov.
Creators: name: Ballantyne, Lesley A.
name: Lambkin, Christine L.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lampyridae
Australoluciola
Australoluciola maxima

description: Australoluciola maxima sp. nov. [Figs 75–82] Holotype. Male. NEW GUINEA: 3.22S 142.14E, West Sepik Province, Torricelli Mt Sea Falls near Afua, 1700 feet 1939 P G Moore (NHML). Paratype (1). Male, same data as holotype (NHML). Diagnosis. The largest species of Australoluciola (9.9–10 mm long) with orange pronotum, dark brown non margined elytra and trisinuate posterior margin to V7; abdominal tergites dark brown. Male. 9.9–10 mm long. Colour (Figs75–77): pronotum and MN orange, MS dusky brown, elytra very dark brown; all of ventral surface including head mouthparts and antennae, very dark brown except for white LO in V6, 7, and white posterior margin of V5; basal portion of MPP behind LO clear semitransparent, tip of MPP very dark brown; LO in V6, 7 whitish, extending into PLP and MPP except for a narrow posterior margin; dorsal surface of abdomen including terminal tergites dark brown (Figs 76, 77). Pronotum: 2.9 mm wide, 1.7–1.9 mm long; W/L = 1.5–1.7; midanterior margin rounded, barely projecting beyond anterolateral corners; lateral margins divergent posteriorly (C, B>A); punctures contiguous or separated by less than their width. Elytra: pin punctate, punctures separated by their width; two to three weakly defined interstitial lines visible. Head: strongly excavated between eyes; GHW 1.9–2.0 mm; SIW 0.3 mm; ASD <ASW. Abdomen (Figs 75–77): V3, V4 posterior margins not recurved; posterior margin of V7 trisinuate, posterolateral corners rounded, not produced as far as MPP; LOs in V7 occupying most of the area and reaching to sides and well into PLP and MPP, except for a narrow posterior margin; MPP apex slightly rounded, L>W. T8: posterior margin slightly obliquely truncate beside median emargination (Fig. 77); ventral surface with lateral ridges rounded anteriorly, no flanges. Aedeagus (Figs 78–80): margins of ML subparallelsided; anterior prolongation of ML short and wide; lateral margins of LL straight, not expanded in apical ½; apices of LL obliquely truncate; L/W=3.2. Aedeagal sheath (Figs 81, 82). Female and Larva. Unknown. Etymology. Named for its size (Latin maximus, a, um large).
description: Published as part of Ballantyne, Lesley A. & Lambkin, Christine L., 2013, Systematics and Phylogenetics of Indo-Pacific Luciolinae Fireflies (Coleoptera: Lampyridae) and the Description of new Genera, pp. 1-162 in Zootaxa 3653 (1) on pages 56-57, DOI: 10.11646/zootaxa.3653.1.1, http://zenodo.org/record/5265340
Lentilactobacillus parabuchneri PARABUCHNERI 2020, COMB. NOV.
Creators: name: Zheng, Jinshui
name: Wittouck, Stijn
name: Salvetti, Elisa
name: Franz, Charles M. A. P.
name: Harris, Hugh M. B.
name: Mattarelli, Paola
name: O'Toole, Paul W.
name: Pot, Bruno
name: Vandamme, Peter
name: Walter, Jens
name: Watanabe, Koichi
name: Wuyts, Sander
name: Felis, Giovanna E.
name: Gänzle, Michael G.
name: Lebeer, Sarah
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Bacteria
Firmicutes
Bacilli
Lactobacillales
Lactobacillaceae
Lentilactobacillus
Lentilactobacillus parabuchneri

description: DESCRIPTIONOF LENTILACTOBACILLUS PARABUCHNERI COMB. NOV.
Lentilactobacillus (Gr. pref. para beside; N.L. gen. n. buchneri aspecies epithet; N.L. gen. n. parabuchneri beside L. buchneri, referring to the close relationship with this organism).
Basonym: Lactobacillus parabuchneri Farrow et al. 1988, 371 VL; strains of the species were previously classified as L. ferintoshensis [334] or L. frigidus [64, 335]
Characteristics are described in [278]; growth is observed at 10 and 40 °C. The genome size of the type strain is 2.61 Mbp. The mol% G+C content of DNA is 43.5.
Isolated from dairy products, saliva, silage, spoiled beer, and some strains were shown to persist over month in whiskey mashes in Scottish distilleries [334].
Thetypestrainis 6ET=ATCC 49374 T = DSM 5707 T =JCM 12493 T =LMG 11457 T.
Genome sequence accession number: AZGK00000000.
16S rRNA gene accession number: AB205056.
description: Published as part of Zheng, Jinshui, Wittouck, Stijn, Salvetti, Elisa, Franz, Charles M. A. P., Harris, Hugh M. B., Mattarelli, Paola, O'Toole, Paul W., Pot, Bruno, Vandamme, Peter, Walter, Jens, Watanabe, Koichi, Wuyts, Sander, Felis, Giovanna E., Gänzle, Michael G. & Lebeer, Sarah, 2020, A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae, pp. 2782-2858 in International Journal of Systematic and Evolutionary Microbiology 70 on pages 2845-2846, DOI: 10.1099/ijsem.0.004107, http://zenodo.org/record/4730536
Semi-structured data extraction and modelling: the WIA Project
Creators: name: Colombo, Gianluca
name: Colombo, Ettore
name: Bonomi, Andrea
name: Mosca, Alessandro
name: Bassis, Simone
Publisher: name: arXiv
Year: 2013
Subjects: subject: Software Engineering (cs.SE)
subject: Computers and Society (cs.CY)
subject: Neural and Evolutionary Computing (cs.NE)
subject: FOS: Computer and information sciences
subject: H3; I.2; H.1.2

description: Over the last decades, the amount of data of all kinds available electronically has increased dramatically. Data are accessible through a range of interfaces including Web browsers, database query languages, application-specific interfaces, built on top of a number of different data exchange formats. All these data span from un-structured to highly structured data. Very often, some of them have structure even if the structure is implicit, and not as rigid or regular as that found in standard database systems. Spreadsheet documents are prototypical in this respect. Spreadsheets are the lightweight technology able to supply companies with easy to build business management and business intelligence applications, and business people largely adopt spreadsheets as smart vehicles for data files generation and sharing. Actually, the more spreadsheets grow in complexity (e.g., their use in product development plans and quoting), the more their arrangement, maintenance, and analysis appear as a knowledge-driven activity. The algorithmic approach to the problem of automatic data structure extraction from spreadsheet documents (i.e., grid-structured and free topological-related data) emerges from the WIA project: Worksheets Intelligent Analyser. The WIA-algorithm shows how to provide a description of spreadsheet contents in terms of higher level of abstractions or conceptualisations. In particular, the WIA-algorithm target is about the extraction of i) the calculus work-flow implemented in the spreadsheets formulas and ii) the logical role played by the data which take part into the calculus. The aim of the resulting conceptualisations is to provide spreadsheets with abstract representations useful for further model refinements and optimizations through evolutionary algorithms computations.
description: In Proceedings Wivace 2013, arXiv:1309.7122
Millardia gleadowi
Creators: name: Musser, Guy G.
name: Carleton, Michael D.
Publisher: name: Zenodo
Year: 1993
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Millardia
Millardia gleadowi

description: Millardia gleadowi (Murray, 1886). Proc. Zool. Soc. Lond., 1885:809 [1886]. TYPE LOCALITY: Pakistan, Sind, Karachi. DISTRIBUTION: Pakistan, adjacent India and Afghanistan. COMMENTS: Raman and Sharna (1977) reported essentially no similarity between karyotypes of M. meltada and M. gleadowi.
description: Published as part of Guy G. Musser & Michael D. Carleton, 1993, Order Rodentia - Family Muridae, pp. 501-755 in Mammal Species of the World (2 nd Edition), Washington and London :Smithsonian Institution Press on page 621, DOI: 10.5281/zenodo.7353098
Additional file 2 of O6-methylguanine DNA methyltransferase and glucose transporter 2 in foregut and hindgut gastrointestinal neuroendocrine neoplasms
Creators: name: Watanabe, Hirofumi
name: Yuto Yamazaki
name: Fumiyoshi Fujishima
name: Komoto Izumi
name: Imamura, Masayuki
name: Hijioka, Susumu
name: Toriyama, Kazuhiro
name: Yatabe, Yasushi
name: Kudo, Atsushi
name: Fuyuhiko Motoi
name: Unno, Michiaki
name: Sasano, Hironobu
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 2.
Pôle national de données de biodiversité, une infrastructure virtuelle au service de la recherche
Creators: name: Le Bras, Yvan
Publisher: name: Zenodo
Year: 2023
Subjects: données de la recherche
biodiversité
PNDB

description: Les données de biodiversité sont gérées en Europe depuis 2007 à la manière des données environnementales par le biais de la directive INSPIRE. Les résultats opérationnels de la directive en terme d'échanges de données et métadonnées ont fait l'objet de rapports assez négatifs, et désormais, sur les aspects standardisation et métadonnées, l'Europe prend une nouvelle orientation pouvant déstabiliser les initiatives mises en place ces 15 dernières années. Dans le cadre de l'infrastructure de recherche pôle national de données de biodiversité (PNDB), ces aspects standardisation, métadonnées et échanges de données sont vus à une échelle nationale mais également mondiale, et permettent d'avoir un point de vue différent de ce qui se passe à l'échelle européenne. Nous proposons ici de faire une restitution des travaux réalisés depuis 2018 sur le sujet côté PNDB. Cette présentation a été réalisée lors du webinaire du jeudi 23 mars 2023, organisé par le GTSO Données de Couperin.
 L’enregistrement est disponible ici : https://www.youtube.com/watch?v=en0tidLylJY&ab_channel=GTSODonn%C3%A9esdeCouperin