cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
RadLing: Towards Efficient Radiology Report Understanding
Creators: name: Ghosh, Rikhiya
name: Karn, Sanjeev Kumar
name: Danu, Manuela Daniela
name: Micu, Larisa
name: Vunikili, Ramya
name: Farri, Oladimeji
Publisher: name: arXiv
Year: 2023
Subjects: subject: Computation and Language (cs.CL)
subject: FOS: Computer and information sciences

description: Most natural language tasks in the radiology domain use language models pre-trained on biomedical corpus. There are few pretrained language models trained specifically for radiology, and fewer still that have been trained in a low data setting and gone on to produce comparable results in fine-tuning tasks. We present RadLing, a continuously pretrained language model using Electra-small (Clark et al., 2020) architecture, trained using over 500K radiology reports, that can compete with state-of-the-art results for fine tuning tasks in radiology domain. Our main contribution in this paper is knowledge-aware masking which is a taxonomic knowledge-assisted pretraining task that dynamically masks tokens to inject knowledge during pretraining. In addition, we also introduce an knowledge base-aided vocabulary extension to adapt the general tokenization vocabulary to radiology domain.
description: Association for Computational Linguistics (ACL), 2023
2009-Chellaboina-EtAl-Modeling And Analysis-Mass Action Kinetics
Creators: name: Chellaboina, Vijaysekhar
Publisher: name: QUBES Educational Resources
Year: 2023

description: Mass-action kinetics are used in chemistry and chemical engineering to describe the dynamics of systems of reactions, that is, reaction networks. These models are a special form of compartmental systems, involving mass- and energy-balance relations.
Flow-induced Shear Stress Confers Resistance to Carboplatin in an Adherent Three-Dimensional Model for Ovarian Cancer: A Role for EGFR-Targeted Photoimmunotherapy Informed by Physical Stress
Creators: name: Nath, Shubhankar
name: Pigula, Michael
name: Khan, Amjad P.
name: Hanna, William
name: Ruhi, Mustafa Kemal
name: Dehkordy, Farzaneh Mahmoodpoor
name: Pushpavanam, Karthik
name: Rege, Kaushal
name: Moore, Kaitlin
name: Tsujita, Yujiro
name: Conrad, Christina
name: Inci, Faith
name: Del Carmen, Marcela G.
name: Franco, Walfre
name: Celli, Jonathan P.
name: Demirci, Utkan
name: Hasan, Tayyaba
name: Huang, Huang-Chiao
name: Rizvi, Imran
Publisher: name: MDPI
Year: 2020
Subjects: ovarian cancer
epidermal growth factor receptor (EGFR)
mitogen-activated protein kinase/extracellular signal-regulated kinase (MEK)
extracellular signal-regulated kinase (ERK)
chemoresistance
fluid shear stress
ascites
perfusion model
photoimmunotherapy (PIT)
photodynamic therapy (PDT)
carboplatin

description: A key reason for the persistently grim statistics associated with metastatic ovarian cancer is resistance to conventional agents, including platinum-based chemotherapies. A major source of treatment failure is the high degree of genetic and molecular heterogeneity, which results from significant underlying genomic instability, as well as stromal and physical cues in the microenvironment. Ovarian cancer commonly disseminates via transcoelomic routes to distant sites, which is associated with the frequent production of malignant ascites, as well as the poorest prognosis. In addition to providing a cell and protein-rich environment for cancer growth and progression, ascitic fluid also confers physical stress on tumors. An understudied area in ovarian cancer research is the impact of fluid shear stress on treatment failure. Here, we investigate the effect of fluid shear stress on response to platinum-based chemotherapy and the modulation of molecular pathways associated with aggressive disease in a perfusion model for adherent 3D ovarian cancer nodules. Resistance to carboplatin is observed under flow with a concomitant increase in the expression and activation of the epidermal growth factor receptor (EGFR) as well as downstream signaling members mitogen-activated protein kinase/extracellular signal-regulated kinase (MEK) and extracellular signal-regulated kinase (ERK). The uptake of platinum by the 3D ovarian cancer nodules was significantly higher in flow cultures compared to static cultures. A downregulation of phospho-focal adhesion kinase (p-FAK), vinculin, and phospho-paxillin was observed following carboplatin treatment in both flow and static cultures. Interestingly, low-dose anti-EGFR photoimmunotherapy (PIT), a targeted photochemical modality, was found to be equally effective in ovarian tumors grown under flow and static conditions. These findings highlight the need to further develop PIT-based combinations that target the EGFR, and sensitize ovarian cancers to chemotherapy in the context of flow-induced shear stress.
Geometric quantum discord with Bures distance: the qubit case
Creators: name: Spehner, Dominique
name: Orszag, Miguel
Publisher: name: arXiv
Year: 2013
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The minimal Bures distance of a quantum state of a bipartite system AB to the set of classical states for subsystem A defines a geometric measure of quantum discord. When A is a qubit, we show that this geometric quantum discord is given in terms of the eigenvalues of a (2 n_B) x (2 n_B) hermitian matrix, n_B being the Hilbert space dimension of the other subsystem B. As a first application, we calculate the geometric discord for the output state of the DQC1 algorithm. We find that it takes its highest value when the unitary matrix from which the algorithm computes the trace has its eigenvalues uniformly distributed on the unit circle modulo a symmetry with respect to the origin. As a second application, we derive an explicit formula for the geometric discord of two-qubit states with maximally mixed marginals and compare it with other measures of quantum correlations. We also determine the closest classical states to such two-qubit states.
description: This article contains some material from a previous preprint arXiv:1304.3334v1 [quant-ph], which has been split into two parts, as well as new results. Minor changes in the second version with respect to the first version. 14 pages, 5 figures
Crystal Strengths at Micro- and Nano-Scale Dimensions
Creators: name: Armstrong, Ronald W.
name: Elban, Wayne L.
Publisher: name: MDPI
Year: 2020
Subjects: crystal strength
micro-crystals
nano-crystals
nano-polycrystals
nano-wires
whiskers
pillars
dislocations
hardness
crystal size dependencies
fracture
strain rate sensitivity

description: Higher strength levels, achieved for dimensionally-smaller micro- and nano-scale materials or material components, such as MEMS devices, are an important enabler of a broad range of present-day engineering devices and structures. Beyond such applications, there is an important effort to understand the dislocation mechanics basis for obtaining such improved strength properties. Four particular examples related to these issues are described in the present report: (1) a compilation of nano-indentation hardness measurements made on silicon crystals spanning nano- to micro-scale testing; (2) stress–strain measurements made on iron and steel materials at micro- to nano-crystal (grain size) dimensions; (3) assessment of small dislocation pile-ups relating to Griffith-type fracture stress vs. crack-size calculations for cleavage fracturing of α-iron; and (4) description of thermally-dependent strain rate sensitivities for grain size strengthening and weakening for macro- to micro- to nano-polycrystalline copper and nickel materials.
Calomys laucha
Creators: name: Musser, Guy G.
name: Carleton, Michael D.
Publisher: name: Zenodo
Year: 1993
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Calomys
Calomys laucha

description: Calomys laucha (Fischer, 1814). In Eschwege, J. Brasilien, Neue Bibliothek. Reisenb., 15(2):209. TYPE LOCALITY: Paraguay, vicinity of Asunción (as restricted by Hershkovitz, 1962:153). DISTRIBUTION: N Argentina and Uruguay, SE Bolivia, W Paraguay, and WC Brazil. SYNONYMS: bimaculatus, bonariensis, dubius, gracilipes, pusillus. COMMENTS: Formerly included hummelincki (See Handley, 1976), musculinus (see Massoia et al., 1968), and tener (see species account). Attribution of pusillus follows Hershkovitz (1962; also see Osgood, 1943:239).
description: Published as part of Guy G. Musser & Michael D. Carleton, 1993, Order Rodentia - Family Muridae, pp. 501-755 in Mammal Species of the World (2 nd Edition), Washington and London :Smithsonian Institution Press on page 698, DOI: 10.5281/zenodo.7353098
description: {"references": ["Hershkovitz, P. 1962. Evolution of Neotropical cricetine rodents (Muridae) with special reference to the phyllotine group. Fieldiana: Zoology, 46: 1 - 524.", "Handley, C. O., Jr. 1976. Mammals of the Smithsonian Venezuelan Project. Brigham Young University Science Bulletin, Biological Series, 20: 1 - 91.", "Massoia, E., A. Fornes, R. L. Wainberg, and T. G. de Fronza. 1968. Nuevos aportes al conocimiento de las especies bonaerenses del genero Calomys (Rodentia-Cricetidae). Revista de Investigaciones Agropecuarias, INTA, Serie 1, Biologia y Produccion Animal, 5: 63 - 92.", "Osgood, W. H. 1943. The mammals of Chile. Field Museum of Natural History, Zoological Series, 30: 1 - 268."]}
A Dynamic Bayesian Network Structure for Joint Diagnostics and Prognostics of Complex Engineering Systems
Creators: name: Lewis, Austin D.
name: Groth, Katrina M.
Publisher: name: MDPI
Year: 2020
Subjects: dynamic Bayesian networks
prognostics and health management
complex engineering systems
casual modeling
risk assessment
safety monitoring

description: Dynamic Bayesian networks (DBNs) represent complex time-dependent causal relationships through the use of conditional probabilities and directed acyclic graph models. DBNs enable the forward and backward inference of system states, diagnosing current system health, and forecasting future system prognosis within the same modeling framework. As a result, there has been growing interest in using DBNs for reliability engineering problems and applications in risk assessment. However, there are open questions about how they can be used to support diagnostics and prognostic health monitoring of a complex engineering system (CES), e.g., power plants, processing facilities and maritime vessels. These systems’ tightly integrated human, hardware, and software components and dynamic operational environments have previously been difficult to model. As part of the growing literature advancing the understanding of how DBNs can be used to improve the risk assessments and health monitoring of CESs, this paper shows the prognostic and diagnostic inference capabilities that are possible to encapsulate within a single DBN model. Using simulated accident sequence data from a model sodium fast nuclear reactor as a case study, a DBN is designed, quantified, and verified based on evidence associated with a transient overpower. The results indicate that a joint prognostic and diagnostic model that is responsive to new system evidence can be generated from operating data to represent CES health. Such a model can therefore serve as another training tool for CES operators to better prepare for accident scenarios.
Calomys lepidus
Creators: name: Musser, Guy G.
name: Carleton, Michael D.
Publisher: name: Zenodo
Year: 1993
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Calomys
Calomys lepidus

description: Calomys lepidus (Thomas, 1884). Proc. Zool. Soc. Lond., 1884:454. TYPE LOCALITY: Peru, Junfn Dept., Junin. DISTRIBUTION: Altipiano of C Peru through W Bolivia, to NE Chile and NW Argentina. SYNONYMS: argurus, carillus, ducillus, marcarum, montanus. COMMENTS: Karyotype reported by Pearson and Patton (1976).
description: Published as part of Guy G. Musser & Michael D. Carleton, 1993, Order Rodentia - Family Muridae, pp. 501-755 in Mammal Species of the World (2 nd Edition), Washington and London :Smithsonian Institution Press on page 698, DOI: 10.5281/zenodo.7353098
description: {"references": ["Pearson, O. P., and J. L. Patton. 1976. Relationships among South American phyllotine rodents based on chromosome analysis. Journal of Mammalogy, 57: 339 - 350."]}
Alternative Scenarios of Relativistic Heavy-Ion Collisions: III. Transverse Momentum Spectra
Creators: name: Ivanov, Yu. B.
Publisher: name: arXiv
Year: 2013
Subjects: subject: Nuclear Theory (nucl-th)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: Transverse-mass spectra, their inverse slopes and mean transverse masses in relativistic collisions of heavy nuclei are analyzed in a wide range of incident energies 2.7 GeV $\le \sqrt{s_{NN}}\le$ 39 GeV. The analysis is performed within the three-fluid model employing three different equations of state (EoS's): a purely hadronic EoS, an EoS with the first-order phase transition and that with a smooth crossover transition into deconfined state. Calculations show that inverse slopes and mean transverse masses of all the species (with the exception of antibaryons within the hadronic scenario) exhibit a step-like behavior similar to that observed for mesons and protons in available experimental data. This step-like behavior takes place for all considered EoS's and results from the freeze-out dynamics rather than is a signal of the deconfinement transition. A good reproduction of experimental inverse slopes and mean transverse masses for light species (up to proton) is achieved within all the considered scenarios. The freeze-out parameters are precisely the same as those used for reproduction of particles yields in previous papers of this series. This became possible because the freeze-out stage is not completely equilibrium.
description: 12 pages, 8 figures, minor changes, version accepted by Phys. Rev. C
Systematics in Asteroseismic Modelling: Application of a Correlated Noise Model for Oscillation Frequencies
Creators: name: Li, Tanda
name: Davies, Guy R.
name: Nielsen, Martin
name: Cunha, Margarida S.
name: Lyttle, Alexander J.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: The detailed modelling of stellar oscillations is a powerful approach to characterising stars. However, poor treatment of systematics in theoretical models leads to misinterpretations of stars. Here we propose a more principled statistical treatment for the systematics to be applied to fitting individual mode frequencies with a typical stellar model grid. We introduce a correlated noise model based on a Gaussian Process (GP) kernel to describe the systematics given that mode frequency systematics are expected to be highly correlated. We show that tuning the GP kernel can reproduce general features of frequency variations for changing model input physics and fundamental parameters. Fits with the correlated noise model better recover stellar parameters than traditional methods which either ignore the systematics or treat them as uncorrelated noise.
description: 11 pages
$τ^-\toπ^-η^{(\prime)}ν_τ$ decays
Creators: name: Roig, P.
Publisher: name: arXiv
Year: 2013
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: The vector and scalar form factors relevant to the second-class current $τ^-\toπ^-η^{(\prime)}ν_τ$ processes are evaluated supplementing Chiral Perturbation Theory with the inclusion of resonances as explicit degrees of freedom. While the vector contribution is essentially fixed from knowledge of the two-pion vector form factor, the scalar form factor demands a coupled channel dispersive analysis to obtain robust predictions for the detection of these decay modes.
description: 4 pages, no figures. Contribution to the Proceedings of the Moriond QCD 13 Conference held in La Thuile, 9-16 March, 2013
Calomys musculinus
Creators: name: Musser, Guy G.
name: Carleton, Michael D.
Publisher: name: Zenodo
Year: 1993
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Calomys
Calomys musculinus

description: Calomys musculinus (Thomas, 1913). Ann. Mag. Nat. Hist., ser. 8, 11:138. TYPE LOCALITY: Argentina, Jujuy Prov., Maimara, 2230 m. DISTRIBUTION: N Argentina, E Paraguay. SYNONYMS: cordovensis, cortensis, murillus. COMMENTS: Included in C. laucha by Hershkovitz (1962) but morphological and karyotypic evidence supports its specific status (Massoia et al., 1968; Pearson and Patton, 1976). Synonymy follows Contreras and Rosi (1980); Reig (1986) listed murillus as a species.
description: Published as part of Guy G. Musser & Michael D. Carleton, 1993, Order Rodentia - Family Muridae, pp. 501-755 in Mammal Species of the World (2 nd Edition), Washington and London :Smithsonian Institution Press on page 698, DOI: 10.5281/zenodo.7353098
description: {"references": ["Hershkovitz, P. 1962. Evolution of Neotropical cricetine rodents (Muridae) with special reference to the phyllotine group. Fieldiana: Zoology, 46: 1 - 524.", "Massoia, E., A. Fornes, R. L. Wainberg, and T. G. de Fronza. 1968. Nuevos aportes al conocimiento de las especies bonaerenses del genero Calomys (Rodentia-Cricetidae). Revista de Investigaciones Agropecuarias, INTA, Serie 1, Biologia y Produccion Animal, 5: 63 - 92.", "Pearson, O. P., and J. L. Patton. 1976. Relationships among South American phyllotine rodents based on chromosome analysis. Journal of Mammalogy, 57: 339 - 350.", "Contreras, J. R., and M. I. Rosi. 1980. El raton de campo Calomys musculinus cordovensis (Thomas) en la provincia de Mendoza. I. Consideraciones taxonomicas. Historia Natural, 1: 17 - 25.", "Reig, O. A. 1986. Diversity patterns and differentiation of high Andean rodents. Pp. 404 - 440, in High altitude tropical biogeography (F. Vuilleumier and M. Monasterio, eds.). Oxford University Press, New York, 649 pp."]}
Wildfire Smoke Particle Properties and Evolution, from Space-Based Multi-Angle Imaging
Creators: name: Noyes, Katherine Junghenn
name: Kahn, Ralph
name: Sedlacek, Arthur
name: Kleinman, Lawrence
name: Limbacher, James
name: Li, Zhanqing
Publisher: name: MDPI
Year: 2020
Subjects: biomass burning
remote sensing
MISR
smoke plumes
aerosol particle properties
aerosols
BBOP
multi-angle
multi-spectral
wildfire

description: Emitted smoke composition is determined by properties of the biomass burning source and ambient ecosystem. However, conditions that mediate the partitioning of black carbon (BC) and brown carbon (BrC) formation, as well as the spatial and temporal factors that drive particle evolution, are not understood adequately for many climate and air-quality related modeling applications. In situ observations provide considerable detail about aerosol microphysical and chemical properties, although sampling is extremely limited. Satellites offer the frequent global coverage that would allow for statistical characterization of emitted and evolved smoke, but generally lack microphysical detail. However, once properly validated, data from the National Aeronautics and Space Administration (NASA) Earth Observing System’s Multi-Angle Imaging Spectroradiometer (MISR) instrument can create at least a partial picture of smoke particle properties and plume evolution. We use in situ data from the Department of Energy’s Biomass Burning Observation Project (BBOP) field campaign to assess the strengths and limitations of smoke particle retrieval results from the MISR Research Aerosol (RA) retrieval algorithm. We then use MISR to characterize wildfire smoke particle properties and to identify the relevant aging factors in several cases, to the extent possible. The RA successfully maps qualitative changes in effective particle size, light absorption, and its spectral dependence, when compared to in situ observations. By observing the entire plume uniformly, the satellite data can be interpreted in terms of smoke plume evolution, including size-selective deposition, new-particle formation, and locations within the plume where BC or BrC dominates.
Instruct-ULTRA D5.5 Outreach programme for new academic communities including an information pack
Creators: name: Gray, Naomi
name: Owens, Ray
Publisher: name: Zenodo
Year: 2018

description: A plan has been developed to promote Instruct-ERIC services to non-structural biologists in the life sciences. During 2018, scientific sessions were hosted at the Federation of European Neuroscience Societies (FENS) Forum and the Federation of European Biochemistry Societies(FEBS) Congress, as a pilot study for future activities. A literature review highlighted particular life science fields where structural biology techniques have particular relevance but are currently underexploited. These fields will be targeted for promotional activities. Following the success of the FENS and FEBS events, and learning from these experiences, a conference schedule has been created for 2019, and potential partnering research infrastructures have been identified. The use of targeted social media, sponsorship opportunities and open calls for research proposals are considered. The Instruct-ERIC website has been significantly tailored to attract and meet the needs of life scientists without a background in structural biology, and an online information pack has been developed for Instruct-ERIC members to use to promote services to new communities.
Constraints on variations of m$_\mathrm{p}$/m$_\mathrm{e}$ based on UVES observations of H$_2$
Creators: name: Wendt, Martin
Publisher: name: arXiv
Year: 2013
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: This article summarizes the latest results on the proton-to-electron mass ratio $μ$ derived from H$_2$ observations at high redshift in the light of possible variations of fundamental physical constants. The focus lies on UVES observations of the past years as enormous progress was achieved since the first positive results on $Δμ/μ$ were published. With the better understanding of systematics, dedicated observation runs, and numerous approaches to improve wavelength calibration accuracy, all current findings are in reasonable good agreement with no variation and provide an upper limit of $Δμ/μ$ $< 1\times 10^{-5}$ for the redshift range of $2
description: related to the 10th AIP Thinkshop, AN, in press, 7 pages, 4 figures
title: Macro Comparisons (LIEPP Fiches méthodologiques / LIEPP Methods briefs, n°35)
Creators: name: Ferragina, Emanuele
Publisher: name: Sciences Po - LIEPP
Year: 2023
Subjects: classificationCode: 5
subject: FOS: Social sciences

description: Macro comparisons is an approach that exploits variation and similarities across large macrosocial units of analysis (e.g. states, regions, provinces) to investigate different social phenomena. Studies can be undertaken at different scales and for various purposes, for example describing macro differences among different states, or evaluating the influence of a different welfare state structure on individual outcomes (such us levels of unemployment, life expectancy etc…).
An Ecolabel for the World Heritage Brand? Developing a Climate Communication Recognition Scheme for Heritage Sites
Creators: name: Samuels, Kathryn Lafrenz
name: Platts, Ellen J.
Publisher: name: MDPI
Year: 2020
Subjects: climate change
climate communication
mitigation
adaptation
World Heritage
heritage tourism
carbon footprint
carbon management
ecolabel
environmental product information scheme
transnational governance

description: This study develops a climate communication recognition scheme (CCRS) for United Nations Educational, Scientific and Cultural Organization (UNESCO) World Heritage Sites (WHS), in order to explore the communicative power of heritage to mobilize stakeholders around climate change. We present this scheme with the aim to influence site management and tourist decision-making by increasing climate awareness at heritage sites and among visitors and encouraging the incorporation of carbon management into heritage site management. Given the deficits and dysfunction in international governance for climate mitigation and inspired by transnational environmental governance tools such as ecolabels and environmental product information schemes, we offer “climate communication recognition schemes” as a corollary tool for transnational climate governance and communication. We assess and develop four dimensions for the CCRS, featuring 50 WHS: carbon footprint analysis, narrative potential, sustainability practices, and the impacts of climate change on heritage resources. In our development of a CCRS, this study builds on the “branding” value and recognition of UNESCO World Heritage, set against the backdrop of increasing tourism—including the projected doubling of international air travel in the next 15–20 years—and the implications of this growth for climate change. The CCRS, titled Climate Footprints of Heritage Tourism, is available online as an ArcGIS StoryMap.
R-Mixup: Riemannian Mixup for Biological Networks
Creators: name: Kan, Xuan
name: Li, Zimu
name: Cui, Hejie
name: Yu, Yue
name: Xu, Ran
name: Yu, Shaojun
name: Zhang, Zilong
name: Guo, Ying
name: Yang, Carl
Publisher: name: arXiv
Year: 2023
Subjects: subject: Machine Learning (cs.LG)
subject: Artificial Intelligence (cs.AI)
subject: Quantitative Methods (q-bio.QM)
subject: FOS: Computer and information sciences
subject: FOS: Biological sciences
subject: I.2.6; J.3
subject: 68T07, 68T05

description: Biological networks are commonly used in biomedical and healthcare domains to effectively model the structure of complex biological systems with interactions linking biological entities. However, due to their characteristics of high dimensionality and low sample size, directly applying deep learning models on biological networks usually faces severe overfitting. In this work, we propose R-MIXUP, a Mixup-based data augmentation technique that suits the symmetric positive definite (SPD) property of adjacency matrices from biological networks with optimized training efficiency. The interpolation process in R-MIXUP leverages the log-Euclidean distance metrics from the Riemannian manifold, effectively addressing the swelling effect and arbitrarily incorrect label issues of vanilla Mixup. We demonstrate the effectiveness of R-MIXUP with five real-world biological network datasets on both regression and classification tasks. Besides, we derive a commonly ignored necessary condition for identifying the SPD matrices of biological networks and empirically study its influence on the model performance. The code implementation can be found in Appendix E.
description: Accepted to KDD 2023
2008-Yang-EtAl-Differential Equation Model of HIV Infection of CD T-Cells with Delay
Creators: name: Yang, Junyuan
Publisher: name: QUBES Educational Resources
Year: 2023

description: Abstract: An epidemic model of HIV infection of CD4+ T-cells with cure rate and delay is studied. We include a baseline ODE version of the model, and a differential-delay model with a discrete time delay.
The compressibility of rotating black holes in D-dimensions
Creators: name: Dolan, Brian P.
Publisher: name: arXiv
Year: 2013
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Treating the cosmological constant as a pressure, in the context of black hole thermodynamics, a thermodynamic volume for the black hole can be defined as being the thermodynamic variable conjugate to the pressure, in the sense of a Legendre transform. The thermodynamic volume is explicitly calculated, as the Legendre transform of the pressure in the enthalpy for a rotating asymptotically anti-de Sitter Myers-Perry black hole in D space-time dimensions. The volume obtained is shown to agree with previous calculations using the Smarr relation. The compressibility is calculated and shown to be non-negative and bounded. Taking the limit of zero cosmological constant, the compressibility of a rotating black hole in asymptotically flat space-times is determined and the corresponding speed of sound computed. The latter is bounded above and has an elegant expression purely in terms of the angular momenta, in the form of quartic and quadratic Casimirs of the rotation group, SO(D-1).
description: 14 pages, 2 figures; discussion of extensive/intensive thermodynamic variables added, and minor typos corrected, in v2
Low-Temperature Properties of Ising Antiferromagnet on a Stacked Triangular Lattice
Creators: name: Žukovič, M.
name: Mižišin, L.
name: Bobák, A.
Publisher: name: arXiv
Year: 2013
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: An Ising antiferromagnet on a stacked triangular lattice in zero field is studied by Monte Carlo simulations, focusing on the character of the low-temperature phase and the effect of the relative strength of the exchange interaction in the stacking direction α. Our results support the presence of the 3D Wannier phase, with the sublattice magnetization structure (m, -m, 0) and power-law decaying m with the lattice size. The extent of this low-temperature phase shrinks with decreasing α, however, it appears even at very low values if it is accessed from higher temperatures by sufficiently slow cooling.
description: Submitted to conference proceedings CSMAG13
Hygroscopicity of Different Types of Aerosol Particles: Case Studies Using Multi-Instrument Data in Megacity Beijing, China
Creators: name: Wu, Tong
name: Li, Zhanqing
name: Chen, Jun
name: Wang, Yuying
name: Wu, Hao
name: Jin, Xiao'ai
name: Liang, Chen
name: Li, Shangze
name: Wang, Wei
name: Cribb, Maureen
Publisher: name: MDPI
Year: 2020
Subjects: aerosol hygroscopicity
lidar observation
dust
non-dust
POLIPHON
chemical composition

description: Water uptake by aerosol particles alters its light-scattering characteristics significantly. However, the hygroscopicities of different aerosol particles are not the same due to their different chemical and physical properties. Such differences are explored by making use of extensive measurements concerning aerosol optical and microphysical properties made during a field experiment from December 2018 to March 2019 in Beijing. The aerosol hygroscopic growth was captured by the aerosol optical characteristics obtained from micropulse lidar, aerosol chemical composition, and aerosol particle size distribution information from ground monitoring, together with conventional meteorological measurements. Aerosol hygroscopicity behaves rather distinctly for mineral dust coarse-mode aerosol (Case I) and non-dust fine-mode aerosol (Case II) in terms of the hygroscopic enhancement factor, 𝑓𝛽(𝑅𝐻,𝜆532), calculated for the same humidity range. The two types of aerosols were identified by applying the polarization lidar photometer networking method (POLIPHON). The hygroscopicity for non-dust aerosol was much higher than that for dust conditions with the 𝑓𝛽(𝑅𝐻,𝜆532) being around 1.4 and 3.1, respectively, at the relative humidity of 86% for the two cases identified in this study. To study the effect of dust particles on the hygroscopicity of the overall atmospheric aerosol, the two types of aerosols were identified and separated by applying the polarization lidar photometer networking method in Case I. The hygroscopic enhancement factor of separated non-dust fine-mode particles in Case I had been significantly strengthened, getting closer to that of the total aerosol in Case II. These results were verified by the hygroscopicity parameter, κ (Case I non-dust particles: 0.357 ± 0.024; Case II total: 0.344 ± 0.026), based on the chemical components obtained by an aerosol chemical speciation instrument, both of which showed strong hygroscopicity. It was found that non-dust fine-mode aerosol contributes more during hygroscopic growth and that non-hygroscopic mineral dust aerosol may reduce the total hygroscopicity per unit volume in Beijing.
Membrane potential based assay for SLC34A1 using HEK293 JumpIn SLC34A1 OE cells
Creators: name: Tremolada, Sara
name: Redaelli, Loredana
name: Scarabottolo, Lia
Publisher: name: Zenodo
Year: 2022
Subjects: Transport assay

description: FLIPR® membrane potential dye measures changes of charges across the cell membrane, upon activation of SLC34A1. The assay allows the detection of ion channel and transporter modulation by increasing or decreasing the fluorescent signal as cellular membrane potential changes. When cells are depolarized dye enters the cells, causing an increase in fluorescent signal, conversely, cells hyperpolarization results in dye exit and decreased fluorescence. SLC34A1 is the type IIa sodium-dependent phosphate cotransporter that plays a critical role in reabsorption of inorganic phosphate (Pi) by renal proximal tubular cells. SLC34A1 mediated transport is electrogenic and preferentially transports divalent Pi (HPO42−). It functions with a Na+:Pi stoichiometry of 3:1 which results in a net inward movement of one positive charge per transport cycle.
INGLIZ VA O'ZBEK TILLARIDAGI REKLAMALARDA EVFEMIZM VA NEOLOGIZMLARNING QO'LLANILISHI
Creators: name: Abdullayeva, Ra'no
Publisher: name: Zenodo
Year: 2025

description:  Ushbu maqolada ingliz va o'zbek tillaridagi reklama matnlarida evfemizm va neologizmlarning qo'llanilishi, ularning o'ziga xos xususiyatlari, reklama samaradorligiga ta'siri hamda lingvistik jihatlari tahlil qilingan. Tadqiqot natijalariga ko'ra, zamonaviy reklamada evfemizm va neologizmlarning roli tobora ortib borayotgani, ular reklama matnlarining ta'sirchanligini oshirishda muhim vosita ekanligi aniqlangan.
Connections and Divergence between Public Health and Built Environment—A Scoping Review
Creators: name: Hu, Ming
name: Roberts, Jennifer D.
Publisher: name: MDPI
Year: 2020
Subjects: public health
built environment
connection
divergence

description: Public health and built environment design have a long-intertwined history of promoting a healthy quality of life. They emerged with the common goal of preventing infectious disease outbreaks in urban areas and improving occupants’ living conditions. In recent years, however, the two disciplines have become less engaged and with each developing a distinct focus. To respond to this disconnection, a systematic review was conducted to identify the connection and divergence between public health and built environment design and planning. This paper aims to establish a context for understanding the connections, synergies, and divergence between public health and built environment design disciplines. Further, the four main health factors in the built environment are identified and explained: physical, physiological, biological, and psychological factors. Finally, future trends to reconnect public health with build environment design are then outlined.
Use of checkpoint-restart for complex HEP software on traditional architectures and Intel MIC
Creators: name: Arya, Kapil
name: Cooperman, Gene
name: Dotti, Andrea
name: Elmer, Peter
Publisher: name: arXiv
Year: 2013
Subjects: subject: Computational Physics (physics.comp-ph)
subject: Distributed, Parallel, and Cluster Computing (cs.DC)
subject: Numerical Analysis (math.NA)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences
subject: FOS: Mathematics

description: Process checkpoint-restart is a technology with great potential for use in HEP workflows. Use cases include debugging, reducing the startup time of applications both in offline batch jobs and the High Level Trigger, permitting job preemption in environments where spare CPU cycles are being used opportunistically and efficient scheduling of a mix of multicore and single-threaded jobs. We report on tests of checkpoint-restart technology using CMS software, Geant4-MT (multi-threaded Geant4), and the DMTCP (Distributed Multithreaded Checkpointing) package. We analyze both single- and multi-threaded applications and test on both standard Intel x86 architectures and on Intel MIC. The tests with multi-threaded applications on Intel MIC are used to consider scalability and performance. These are considered an indicator of what the future may hold for many-core computing.
description: Submitted to proceedings of the 15th International Workshop on Advanced Computing and Analysis Techniques in Physics Research (ACAT2013), Beijing
Calomys sorellus
Creators: name: Musser, Guy G.
name: Carleton, Michael D.
Publisher: name: Zenodo
Year: 1993
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Calomys
Calomys sorellus

description: Calomys sorellus (Thomas, 1900). Ann. Mag. Nat. Hist., ser. 7, 6:297. TYPE LOCALITY: Peru, Libertad Dept., 8 mi S Huamachuco, 3500 m. DISTRIBUTION: Peruvian Andes, above 2000 m, from Dept. Libertad to Puno. SYNONYMS: frida, miurus. COMMENTS: Classified as a subspecies of C. lepidus (Cabrera, 1961); discrimination from and sympatry with C. lepidus documented by Hershkovitz (1962), who relegated frida and miurus to synonymy under C. sorellus (also see Pearson and Patton, 1976).
description: Published as part of Guy G. Musser & Michael D. Carleton, 1993, Order Rodentia - Family Muridae, pp. 501-755 in Mammal Species of the World (2 nd Edition), Washington and London :Smithsonian Institution Press on page 698, DOI: 10.5281/zenodo.7353098
description: {"references": ["Hershkovitz, P. 1962. Evolution of Neotropical cricetine rodents (Muridae) with special reference to the phyllotine group. Fieldiana: Zoology, 46: 1 - 524.", "Pearson, O. P., and J. L. Patton. 1976. Relationships among South American phyllotine rodents based on chromosome analysis. Journal of Mammalogy, 57: 339 - 350."]}
Tracking Extrema in Dynamic Environment using Multi-Swarm Cellular PSO with Local Search
Creators: name: Nabizadeh, Somayeh
name: Rezvanian, Alireza
name: Meybodi, Mohammad Reza
Publisher: name: arXiv
Year: 2013
Subjects: subject: Artificial Intelligence (cs.AI)
subject: Neural and Evolutionary Computing (cs.NE)
subject: FOS: Computer and information sciences

description: Many real-world phenomena can be modelled as dynamic optimization problems. In such cases, the environment problem changes dynamically and therefore, conventional methods are not capable of dealing with such problems. In this paper, a novel multi-swarm cellular particle swarm optimization algorithm is proposed by clustering and local search. In the proposed algorithm, the search space is partitioned into cells, while the particles identify changes in the search space and form clusters to create sub-swarms. Then a local search is applied to improve the solutions in the each cell. Simulation results for static standard benchmarks and dynamic environments show superiority of the proposed method over other alternative approaches.
description: 8 pages, 3 figures
Calomys tener
Creators: name: Musser, Guy G.
name: Carleton, Michael D.
Publisher: name: Zenodo
Year: 1993
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Calomys
Calomys tener

description: Calomys tener (Winge, 1887). E Museo Lundii, 1 (3):15. TYPE LOCALITY: Brazil, Minas Gerais, Rio das Velhas, Lagoa Santa. DISTRIBUTION: EC Brazil. COMMENTS: Arranged as a subspecies of C. laucha by Hershkovitz (1962), but others have retained tener, along with C. laucha, as distinct species (Cabrera, 1961; Mares et al., 1989a; Moojen, 1952), which suggests the need for further study of their level of differentiation.
description: Published as part of Guy G. Musser & Michael D. Carleton, 1993, Order Rodentia - Family Muridae, pp. 501-755 in Mammal Species of the World (2 nd Edition), Washington and London :Smithsonian Institution Press on page 698, DOI: 10.5281/zenodo.7353098
description: {"references": ["Hershkovitz, P. 1962. Evolution of Neotropical cricetine rodents (Muridae) with special reference to the phyllotine group. Fieldiana: Zoology, 46: 1 - 524.", "Mares, M. A., J. K. Braun, and D. Gettinger. 1989 a. Observations on the distribution and ecology of the mammals of the Cerrado grasslands of central Brazil. Annals of Carnegie Museum, 58: 1 - 60.", "Moojen, J. 1952. Os roedores do Brasil. Biblioteca Cientifica Brasileira, ser. A, 2: 1 - 214."]}
Spin Hall magnetoresistance in Pt/Y$_{3}$Fe$_{5}$O$_{12}$ bilayers grown on Si and Gd$_{3}$Ga$_{5}$O$_{12}$ substrates
Creators: name: Fukushima, Kenta
name: Ueda, Kohei
name: Moriuchi, Naoki
name: Kida, Takanori
name: Hagiwara, Masayuki
name: Matsuno, Jobu
Publisher: name: arXiv
Year: 2023
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We study spin Hall magnetoresistance (SMR) in Pt/ferrimagnetic insulator Y$_{3}$Fe$_{5}$O$_{12}$ (YIG) bilayers by focusing on crystallinity, magnetization, and interface roughness by controlling post-annealing temperatures. The SMR in the Pt/YIG grown on Si substrate is comparable to that grown on widely used Gd$_{3}$Ga$_{5}$O$_{12}$ substrate, indicating that the large SMR can be achieved irrespective to the crystallinity. We deduced the spin mixing conductance from the Pt thickness dependence of the SMR to find the high interface quality of the optimized Pt/YIG grown on Si in terms of spin current. We also clarified that the SMR correlates well with the magnetization, the interface roughness, and carrier density. These findings highlight that optimizing YIG properties is a key to control of magnetization by spin current, leading to the development of low power consumption spintronic device based on the magnetic insulator.
Tracing the evolution of Active Galactic Nuclei host galaxies over the last 9 Gyrs of Cosmic time
Creators: name: Goulding, Andy D.
name: Forman, William R.
name: Hickox, Ryan C.
name: Jones, Christine
name: Murray, Stephen S.
name: Paggi, Alessandro
name: Ashby, Matthew L. N.
name: Coil, Alison L.
name: Cooper, Michael C.
name: Huang, Jiasheng
name: Kraft, Ralph
name: Newman, Jeffrey A.
name: Weiner, Benjamin J.
name: Willner, Steven P.
Publisher: name: arXiv
Year: 2013
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We present the results of a combined galaxy population analysis for the host galaxies of active galactic nuclei (AGN) identified at 0 < z < 1.4 within the SDSS, Bootes and DEEP2 surveys. We identified AGN in a uniform and unbiased manner at X-ray, infrared and radio wavelengths. Supermassive black holes undergoing radiatively-efficient accretion (detected as X-ray and/or infrared AGN) appear to be hosted in a separate and distinct galaxy population than AGN undergoing powerful mechanically dominated accretion (radio AGN). Consistent with some previous studies, radiatively efficient AGN appear to be preferentially hosted in modest star-forming galaxies, with little dependence on AGN or galaxy luminosity. AGN exhibiting radio-emitting jets due to mechanically-dominated accretion are almost exclusively observed in massive, passive galaxies. Crucially, we now provide strong evidence that the observed host-galaxy trends are independent of redshift. In particular, these different accretion-mode AGN have remained as separate galaxy populations throughout the last 9 Gyr. Furthermore, it appears that galaxies hosting AGN have evolved along the same path as galaxies that are not hosting AGN with little evidence for distinctly separate evolution.
description: 22 pages, 8 figures, submitted to ApJ
CoreTrustSeal: Second Draft Consultation of the Recommendations on certifying the services required to enable FAIR research outputs within EOSC. Feedback
Creators: name: CoreTrustSeal Standards & Certification Board
Publisher: name: Zenodo
Year: 2020
Subjects: CoreTrustSeal, Trustworthy Digital Repository, TDR, FAIR, EOSC

description: In this public document, we provide our feedback with some selected extracts from the report to provide context. We welcome the well-considered and measured response to the issue of certification provided by the report, and appreciate the positive perspective on the work of CoreTrustSeal to date and the acknowledgment that trust is critical to the success of the EOSC and of global collaborative data infrastructures.
Asymptotic Symmetries of Yang-Mills Theory
Creators: name: Strominger, Andrew
Publisher: name: arXiv
Year: 2013
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: Asymptotic symmetries at future null infinity (I+) of Minkowski space for electrodynamics with massless charged fields, as well as non-Abelian gauge theories with gauge group G, are considered at the semiclassical level. The possibility of charge/color flux through I+ suggests the symmetry group is infinite-dimensional. It is conjectured that the symmetries include a G Kac-Moody symmetry whose generators are "large" gauge transformations which approach locally holomorphic functions on the conformal two-sphere at I+ and are invariant under null translations. The Kac-Moody currents are constructed from the gauge field at the future boundary of I+. The current Ward identities include Weinberg's soft photon theorem and its colored extension.
description: 19 pages, 1 figure. Revised version contains minor edits and additional references
2008-Padir-EtAl-Teaching Differential Equations in a Diverse Classroom
Creators: name: Padir, Taskin
Publisher: name: QUBES Educational Resources
Year: 2023

description: The interesting portion of this paper are the descriptions of student projects offered: Vibrations of a 3-Story Building in an Earthquake, Triple Pendulum, Nonlinear Circuit. Phase portraits were offered in each case.
2008-Huet-Deffuant-Differential Equation Models Derived from an Individual-Based Model Can Help to Understand Emergent Effects
Creators: name: Huet, Sylvie
Publisher: name: QUBES Educational Resources
Year: 2023

description: We study a model of primacy effect on individual's attitude. Typically, when receiving a strong negative feature first, the individual keeps a negative attitude whatever the number of moderate positive features it receives afterwards.
Chelemys
Creators: name: Musser, Guy G.
name: Carleton, Michael D.
Publisher: name: Zenodo
Year: 1993
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Chelemys

description: Chelemys (Thomas, 1903). Ann. Mag. Nat. Hist., ser. 7, 12:242. TYPE SPECIES: Akodon megalonyx Thomas, 1903. COMMENTS: Akodontine. Named as a subgenus of Akodon, later ranked as a genus (Gyldenstolpe, 1932; Reig, 1987; Thomas, 1927) or consolidated under Notiomys, together with Geoxus (Cabrera, 1961; Ellerman, 1941; Osgood, 1925, 1943). Pearson (1984) enumerated diagnostic traits of these three long-clawed, semi-fossorial taxa, and Reig (1987) amplified their morphological definition. Chelemys angustus Thomas, 1927, is based on a specimen of Akodon longipilis (see Pearson, 1984).
description: Published as part of Guy G. Musser & Michael D. Carleton, 1993, Order Rodentia - Family Muridae, pp. 501-755 in Mammal Species of the World (2 nd Edition), Washington and London :Smithsonian Institution Press on page 699, DOI: 10.5281/zenodo.7353098
description: {"references": ["Thomas, O. 1903. Notes on Neotropical mammals of the genera Felis, Hapale, Oryzomys, Akodon, and Ctenomys, with descriptions of new species. Annals and Magazine of Natural History, ser. 7, 12: 234 - 243.", "Gyldenstolpe, N. 1932. A manual of Neotropical sigmodont rodents. Kungliga Svenska Vetenskapsakademiens Handlingar, Tredje Serien, 11: 1 - 164.", "Thomas, O. 1927. On a further collection of mammals made by Sr. E. Budin in Neuquen, Patagonia. Annals and Magazine of Natural History, ser. 9, 19: 650 - 658.", "Ellerman, J. R. 1941. The families and genera of living rodents. Vol. II. Family Muridae. British Museum (Natural History), London, 690 pp.", "Osgood, W. H. 1925. The long-clawed South American rodents of the genus Notiomys. Field Museum of Natural History, Zoological Series, 12: 113 - 125.", "Osgood, W. H. 1943. The mammals of Chile. Field Museum of Natural History, Zoological Series, 30: 1 - 268.", "Pearson, O. P. 1984. Taxonomy and natural history of some fossorial rodents of Patagonia, southern Argentina. Journal of Zoology, London, 202: 225 - 237."]}