cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Universal Scaling Relations in Scale-Free Structure Formation
Creators: name: Guszejnov, David
name: Hopkins, Philip F.
name: Grudić, Michael Y.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: A large number of astronomical phenomena exhibit remarkably similar scaling relations. The most well-known of these is the mass distribution $\mathrm{d} N/\mathrm{d} M\propto M^{-2}$ which (to first order) describes stars, protostellar cores, clumps, giant molecular clouds, star clusters and even dark matter halos. In this paper we propose that this ubiquity is not a coincidence and that it is the generic result of scale-free structure formation where the different scales are uncorrelated. We show that all such systems produce a mass function proportional to $M^{-2}$ and a column density distribution with a power law tail of $\mathrm{d} A/\mathrm{d} \lnΣ\proptoΣ^{-1}$. In the case where structure formation is controlled by gravity the two-point correlation becomes $ξ_{2D}\propto R^{-1}$. Furthermore, structures formed by such processes (e.g. young star clusters, DM halos) tend to a $ρ\propto R^{-3}$ density profile. We compare these predictions with observations, analytical fragmentation cascade models, semi-analytical models of gravito-turbulent fragmentation and detailed "full physics" hydrodynamical simulations. We find that these power-laws are good first order descriptions in all cases.
description: 12 pages, 6 figures, 2 tables, submitted to MNRAS
Comparison of EMG pattern separability in the affected and non-affected arm in individuals with amputation
Creators: name: Franzke, AW
name: Kristoffersen, MB
name: Murgia, A
name: Bongers, RM
name: Van der Sluis, CK
Publisher: name: Zenodo
Year: 2019
Subjects: Myoelectric prostheses
Pattern Recognition
Upper limb prosthetic

description: Comparison of EMG pattern distinctness in the affected and non-affected arm in amputees Authors: A.W. Franzke, M.B. Kristoffersen, A. Murgia, R.M. Bongers, C.K. van der Sluis Presenter: Andreas W. Franzke Affiliation: Univ. of Groningen, Univ. Medical Center Groningen, The Netherlands E-mail: a.w.franzke@umcg.nl Abstract  In myocontrol of upper limb prostheses using machine learning techniques, a basic requirement is the user’s ability to generate sufficiently distinct surface electromyography (sEMG) signals for different movement intents, over a wide range of arm orientations.1 Experiments with regard to training this ability are often conducted on able bodied, but it is unclear to what extent findings in non-affected limbs are representative for the affected limb. In this study we investigated whether sEMG patterns are more distinct in the unaffected compared to the affected side, and whether distinctness is affected by arm posture. 11 individuals with transradial amputation performed seven bimanual movements in three different arm orientations (hanging down; on arm rest; reaching out in front). sEMG patterns were recorded simultaneously on both arms with 8 electrodes. Distinctness was assessed by estimating the distance between sEMG patterns in the sEMG feature space using a modified mahalanobis distance measure. The data analysis showed that distinctness was significantly higher in the unaffected arm (p = 0.027) and no effect for orientation of arm and no interaction effect between arm and orientation of arm (p = 0.21) was found. These findings suggest that sEMG pattern distinctness is negatively affected by the absence of a limb. Generating sEMG patterns of sufficient distinctness for proper myoelectric control might therefore be more challenging for an individual with amputation compared to an able-bodied individual, which could have implications for machine learning myocontrol studies conducted on able bodied populations. Acknowledgement This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No. 687795, project Acronym INPUT. The content of
 this presentation does not reflect the official opinion of the European Union. Responsibility for the information and views expressed in therein lies entirely with the authors. References  1. Resnik L, Huang H, Winslow A, et al. Evaluation of EMG pattern recognition for upper limb prosthesis control: a case study in comparison with direct myoelectric control. J Neuroeng Rehabil 2018; 15: 23. Presented during TIPS/ISPO/BACPAR "Moving Beyond The Lab" on 20-23 March 2019 in Salford, Manchester.
Additional file 2: of Associations between perceived stress, socioeconomic status, and health-risk behaviour in deprived neighbourhoods in Denmark: a cross-sectional study
Creators: name: Algren, Maria
name: Ekholm, Ola
name: Nielsen, Line
name: ErsbĂ¸Ll, Annette
name: Bak, Carsten
name: Andersen, Pernille
Publisher: name: figshare
Year: 2018
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Table S2. Prevalence of perceived stress in deprived neighbourhoods and in general population. ORs with 95% CI for perceived stress in deprived neighbourhoods compared to general population. (DOCX 16Â kb)
Cakile maritima Scop.
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Brassicales
Brassicaceae
Cakile
Cakile maritima

description: Bunias cakile Linnaeus, Species Plantarum 2: 670. 1753.
"Habitat in Europae, Africae, Americae maritimis." RCN: 4881.
 Lectotype (Elven in Jonsell & Jarvis in Nordic J. Bot. 22: 68. 2002): Herb. Linn. No. 847.5a, right specimen (LINN).
 Current name: Cakile maritima Scop. (Brassicaceae).
 Note: Elven provides an extensive discussion along with the formal typification of this name.
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part B), pp. 343-369 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 365, DOI: 10.5281/zenodo.291971
Asymptotic representations of augmented q-Onsager algebra and boundary K-operators related to Baxter Q-operators
Creators: name: Baseilhac, Pascal
name: Tsuboi, Zengo
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mathematical Physics (math-ph)
subject: High Energy Physics - Theory (hep-th)
subject: Quantum Algebra (math.QA)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: We consider intertwining relations of the augmented $q$-Onsager algebra introduced by Ito and Terwilliger, and obtain generic (diagonal) boundary $K$-operators in terms of the Cartan element of $U_{q}(sl_2)$. These $K$-operators solve reflection equations. Taking appropriate limits of these $K$-operators in Verma modules, we derive $K$-operators for Baxter Q-operators and corresponding reflection equations.
description: 45 pages, v2: universal T- and Q-operators added
Co-zyBench: using co-simulation and digital twins to benchmark thermal comfort provision in smart buildings
Creators: name: Ma, Jun
name: Panic, Dimitrije
name: Yus, Roberto
name: Bouloukakis, Georgios
Publisher: name: HAL
Year: 2024

description: 22nd International Conference on Pervasive Computing and Communications (PerCom), IEEE, Mar 2024, Biarritz, France.
description: Heating, Ventilation, and Air Conditioning (HVAC) systems account for 40% to 50% of energy usage in commercial buildings. Thus, innovative ways to control and manage HVAC systems while preserving occupants’ comfort are required. State-of-the-art solutions employ pervasive systems with sensors or smart devices to gauge individual thermal sensations, yet assessing these methods is challenging. Real-world experiments are expensive, limited in access, and often overlook occupant and regional diversity. To address this, we introduce Co-zyBench, a benchmark tool using a Digital Twin (DT) approach for evaluating personalized thermal comfort systems. It employs a co-simulation middleware interfacing between a DT of the smart building and its HVAC system and another DT representing occupants' dynamic thermal preferences in various spaces. The DTs that support Co-zyBench are generated based on information, including data captured by sensors, of the space in which the thermal comfort system has to be evaluated. Co-zyBench incorporates metrics for energy consumption, thermal comfort, and occupant equality. It also features reference DTs based on standard buildings, HVAC systems, and occupants with diverse thermal preferences.
Error Characterization, Mitigation, and Recovery in Flash Memory Based Solid-State Drives
Creators: name: Cai, Yu
name: Ghose, Saugata
name: Haratsch, Erich F.
name: Luo, Yixin
name: Mutlu, Onur
Publisher: name: arXiv
Year: 2017
Subjects: subject: Hardware Architecture (cs.AR)
subject: FOS: Computer and information sciences

description: NAND flash memory is ubiquitous in everyday life today because its capacity has continuously increased and cost has continuously decreased over decades. This positive growth is a result of two key trends: (1) effective process technology scaling, and (2) multi-level (e.g., MLC, TLC) cell data coding. Unfortunately, the reliability of raw data stored in flash memory has also continued to become more difficult to ensure, because these two trends lead to (1) fewer electrons in the flash memory cell (floating gate) to represent the data and (2) larger cell-to-cell interference and disturbance effects. Without mitigation, worsening reliability can reduce the lifetime of NAND flash memory. As a result, flash memory controllers in solid-state drives (SSDs) have become much more sophisticated: they incorporate many effective techniques to ensure the correct interpretation of noisy data stored in flash memory cells. In this article, we review recent advances in SSD error characterization, mitigation, and data recovery techniques for reliability and lifetime improvement. We provide rigorous experimental data from state-of-the-art MLC and TLC NAND flash devices on various types of flash memory errors, to motivate the need for such techniques. Based on the understanding developed by the experimental characterization, we describe several mitigation and recovery techniques, including (1) cell-to-cell interference mitigation, (2) optimal multi-level cell sensing, (3) error correction using state-of-the-art algorithms and methods, and (4) data recovery when error correction fails. We quantify the reliability improvement provided by each of these techniques. Looking forward, we briefly discuss how flash memory and these techniques could evolve into the future.
Additional file 2: of A randomised controlled trial to test the effectiveness of decision training on assessorsâ ability to determine optimal fitness-to-drive recommendations for older or disabled drivers
Creators: name: Harries, Priscilla
name: Unsworth, Carolyn
name: Hulya Gokalp
name: Davies, Miranda
name: Tomlinson, Christopher
name: Harries, Luke
Publisher: name: figshare
Year: 2018
Subjects: subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Science Policy

description: Example of case scenario. (DOCX 15 kb)
Pugionium cornutum Gaertn.
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Brassicales
Brassicaceae
Pugionium
Pugionium cornutum

description: Bunias cornuta Linnaeus, Species Plantarum 2: 669. 1753.
"Habitat in Sibiria. D. Gmelin." RCN: 4877.
 Lectotype (Illarionova in Komarovia 1: 36. 1999): Herb. Linn. No. 847.1 (LINN).
 Current name: Pugionium cornutum (L.) Gaertn. (Brassicaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part B), pp. 343-369 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 365, DOI: 10.5281/zenodo.291971
Supplementary Information from Statistical analysis reveals the onset of synchrony in sparse swarms of Photinus knulli fireflies
Creators: name: Sarfati, Raphaël
name: Gaudette, Laura
name: Cicero, Joseph M.
name: Peleg, Orit
Publisher: name: The Royal Society
Year: 2022
Subjects: subject: 10202 Biological Mathematics
subject: FOS: Mathematics

description: Flash synchrony within firefly swarms is an elegant but elusive manifestation of collective animal behaviour. It has been observed, and sometimes demonstrated, in a few populations across the world, but exactly which species are capable of large-scale synchronization remains unclear, especially for low-density swarms. The underlying question which we address here is: how does one qualify a collective flashing display as synchronous, given that the only information available is the time and location of flashes? We propose different statistical approaches and apply them to high-resolution stereoscopic video recordings of the collective flashing of Photinus knulli fireflies, hence establishing the occurrence of synchrony in this species. These results substantiate detailed visual observations published in the early 1980s and made at the same experimental site: Peña Blanca Canyon, Coronado National Forest, Arizona, USA. We also remark that P. knulli’s collective flashing patterns mirror that observed in Photinus carolinus fireflies in the Eastern United States, consisting of synchronous flashes in periodic bursts with rapid accretion and quick decay.
Additional file 1 of Overexpression of a novel small auxin-up RNA gene, OsSAUR11, enhances rice deep rootedness
Creators: name: Xu, Kai
name: Lou, Qiaojun
name: Wang, Di
name: Li, Tiemei
name: Chen, Shoujun
name: Li, Tianfei
name: Luo, Lijun
name: Chen, Liang
Publisher: name: figshare
Year: 2023
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Supplementary Material 1
Additional file 1: Appendix 1. of Chronic morbidity, deprivation and primary medical care spending in England in 2015-16: a cross-sectional spatial analysis
Creators: name: Kontopantelis, Evangelos
name: Mamas Mamas
name: Marwijk, Harm Van
name: Ryan, Andrew
name: Bower, Peter
name: Guthrie, Bruce
name: Doran, Tim
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Computational Biology

description: Details of methods and additional analyses. (DOCX 47Â kb)
The Book of White Rural Rage
Creators: name: Dasgupta, Sunil
name: Schaller, Tom
name: Waldman, Paul
Publisher: name: I Hate Politics Podcast
Year: 2024
Subjects: I Hate Politics

description: Listen to this episode from I Hate Politics Podcast on Spotify. Sunil Dasgupta talks with UMBC political scientist Tom Schaller and Washington DC journalist Paul Waldman about their bestselling new book examining the threat to American democracy from the paradox of the power and impotence of 15 percent of the US population living in rural America. Music from Damascus, MD,-based rapper and music producer Cataclizm: youtube.com/@thereckoning301. White Rural Rage: https://a.co/d/0YmkWJ7.
Bunias erucago Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Brassicales
Brassicaceae
Bunias
Bunias erucago

description: Bunias erucago Linnaeus, Species Plantarum 2: 670. 1753.
"Habitat Monspelii in agris humidiusculis." RCN: 4879.
 Lectotype (Hedge in Jarvis & al., Regnum Veg. 127: 27. 1993): Herb. Clifford: 340, Bunias 1 (BM-000646379).
 Generitype of Bunias Linnaeus (vide Green, Prop. Brit. Bot.: 172. 1929).
 Current name: Bunias erucago L. (Brassicaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part B), pp. 343-369 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 365, DOI: 10.5281/zenodo.291971
Fear of the Family: Guest Workers and Family Migration in the Federal Republic of Germany By Lauren Stokes. New York: Oxford University Press, 2022. Pp. 312. Hardcover $35.00. ISBN: 978-0197558416.
Creators: name: Wyck, Brian Van
Publisher: name: Cambridge University Press
Year: 2024

description: //static.cambridge.org/content/id/urn%3Acambridge.org%3Aid%3Aarticle%3AS0008938923001528/resource/name/firstPage-pdf-S0008938923001528a.jpg
An Assessment of MSW Social Work Curricula: Semester-Long Courses Specifically Related to Immigrants and Immigration
Creators: name: Evans, Kerri
name: Figuereo, Victor
name: Rosales, Robert
name: Woo, Bongki
name: Perez-Aponte, Jaime
Publisher: name: Taylor & Francis
Year: 2024
Subjects: courses
immigrant
pedagogy
Social work education
teaching

description: Social workers are well positioned to meet the needs of the immigrant population in the United States (U.S.) and social workers across all fields and specializations should both feel competent and have the appropriate skills to work with immigrant clients. In this paper, we provide context around the immigrant population in the U.S. and discuss social work’s role in helping immigrants, and the role of the MSW degree in helping to prepare social workers to work with immigrants. Using publicly available data on MSW school websites, we analyze the prevalence of courses that specifically focus on immigrants or immigration. We found a lack of semester-long immigrant-specific courses in that only 12% of the programs offered these courses. We also noted the geographic clustering of some programs that offer these courses. We propose that schools do one of the following depending on their current course offerings, faculty expertise, and other resources: ensuring that basic content and case examples about immigrants are included in foundational social work courses, and when feasible or appropriate create elective courses, or create a concentration for those wishing to specialize in social work practice with immigrants.
Rayleigh-Bénard convection in a creeping solid with melting and freezing at either or both its horizontal boundaries
Creators: name: Labrosse, Stéphane
name: Morison, Adrien
name: Deguen, Renaud
name: Alboussière, Thierry
Publisher: name: arXiv
Year: 2017
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: Geophysics (physics.geo-ph)
subject: FOS: Physical sciences

description: Solid state convection can take place in the rocky or icy mantles of planetary objects and these mantles can be surrounded above or below or both by molten layers of similar composition. A flow toward the interface can proceed through it by changing phase. This behaviour is modeled by a boundary condition taking into account the competition between viscous stress in the solid, that builds topography of the interface with a timescale $τ_η$, and convective transfer of the latent heat in the liquid from places of the boundary where freezing occurs to places of melting, which acts to erase topography, with a timescale $τ_ϕ$. The ratio $Φ=τ_ϕ/τ_η$ controls whether the boundary condition is the classical non-penetrative one ($Φ\rightarrow \infty$) or allows for a finite flow through the boundary (small $Φ$). We study Rayleigh-Bénard convection in a plane layer subject to this boundary condition at either or both its boundaries using linear and weakly non-linear analyses. When both boundaries are phase change interfaces with equal values of $Φ$, a non-deforming translation mode is possible with a critical Rayleigh number equal to $24Φ$. At small values of $Φ$, this mode competes with a weakly deforming mode having a slightly lower critical Rayleigh number and a very long wavelength, $λ_c\sim 8\sqrt{2}π/ 3\sqrtΦ$. Both modes lead to very efficient heat transfer, as expressed by the relationship between the Nusselt and Rayleigh numbers. When only one boundary is subject to a phase change condition, the critical Rayleigh number is $\Ray_c=153$ and the critical wavelength is $λ_c=5$. The Nusselt number increases about twice faster with Rayleigh number than in the classical case with non-penetrative conditions when the bottom boundary is a phase change interface.
description: Submitted to the Journal of Fluid Mechanics. 28 pages, 16 figures
Additional file 1: of Associations between perceived stress, socioeconomic status, and health-risk behaviour in deprived neighbourhoods in Denmark: a cross-sectional study
Creators: name: Algren, Maria
name: Ekholm, Ola
name: Nielsen, Line
name: ErsbĂ¸Ll, Annette
name: Bak, Carsten
name: Andersen, Pernille
Publisher: name: figshare
Year: 2018
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Table S1. Factor loadings for perceived stress index in deprived neighbourhoods and in the general population. (DOCX 15Â kb)
Can e-learning replace classroom learning?
Creators: name: Zhang, Dongsong
name: Zhao, J. Leon
name: Zhou, Lina
name: Nunamaker, Jay F.
Publisher: name: ACM
Year: 2004
Subjects: Applied computing
Education
Social and professional topics
Professional topics
Computing education
Computing education programs
Computer science education
Information science education

description: In an e-learning environment that emphasizes learner-centered activity and system interactivity, remote learners can outperform traditional classroom students.
Erucaria hispanica Druce 1811
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Brassicales
Brassicaceae
Erucaria
Erucaria hispanica

description: Bunias myagroides Linnaeus, Systema Naturae, ed. 12, 2: 446; Mantissa Plantarum: 96. 1767.
"Habitat in Sibiria. J. Falk." RCN: 4882.
 Lectotype (Gómez-Campo in Cafferty & Jarvis in Taxon 51: 532. 2002): Herb. Linn. No. 847.9 (LINN).
 Current name: Erucaria hispanica (L.) Druce (Brassicaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part B), pp. 343-369 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 365, DOI: 10.5281/zenodo.291971
Sterile neutrino searches via displaced vertices at LHCb
Creators: name: Antusch, Stefan
name: Cazzato, Eros
name: Fischer, Oliver
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We explore the sensitivity of displaced vertex searches at LHCb for testing sterile neutrino extensions of the Standard Model towards explaining the observed neutrino masses. We derive estimates for the constraints on sterile neutrino parameters from a recently published displaced vertex search at LHCb based on run 1 data. They yield the currently most stringent limit on active-sterile neutrino mixing in the sterile neutrino mass range between 4.5 GeV and 10 GeV. Furthermore, we present forecasts for the sensitivities that could be obtained from the run 2 data and also for the high-luminosity phase of the LHC.
description: 5 pages, 6 Figures, 1 Table, version to appear in PLB
Albert Edward Cramp of Coventry
Creators: name: Project Team, Their Finest Hour
Publisher: name: University of Oxford
Year: 2024
Subjects: classificationCode: 430304
subject: British history
classificationCode: 430308
subject: European history (excl. British, classical Greek and Roman)
classificationCode: 430316
subject: International history

description: Josephine Seymour was six years old during the war. She was sheltering in Drapers' Hall next to the Cathedral. She was in an air raid shelter during the Blitz. Her whole area was destroyed. She survived and never evacuated. After the war, when she was eleven, the Red Cross took children from Coventry and Birmingham to Switzerland.All the objects belong to Albert Edward Cramp, the contributor's great-uncle, who lived in Coventry. He had tuberculosis, so he could not fight. He worked at Armstrong Whitworth. He worked as a fireman. Off duty, he was a member of Air Raid Precautions (ARP). He had been in the attic. Albert lived in Coventry during the war and died in 2014. His two sons were clearing the house and said that they were going to put the objects in the bin. However, the contributor kept the objects, and the grandchildren took them to school. The contributor is not sure where the gas mask and bag are from.Albert would not talk much about the war except that they had to collect body parts from trees. He would not write his memories down despite his being interested in family history.The contributor got a book about ARP to find out more.
Minimap2: pairwise alignment for nucleotide sequences
Creators: name: Li, Heng
Publisher: name: arXiv
Year: 2017
Subjects: subject: Genomics (q-bio.GN)
subject: FOS: Biological sciences

description: Motivation: Recent advances in sequencing technologies promise ultra-long reads of $\sim$100 kilo bases (kb) in average, full-length mRNA or cDNA reads in high throughput and genomic contigs over 100 mega bases (Mb) in length. Existing alignment programs are unable or inefficient to process such data at scale, which presses for the development of new alignment algorithms. Results: Minimap2 is a general-purpose alignment program to map DNA or long mRNA sequences against a large reference database. It works with accurate short reads of $\ge$100bp in length, $\ge$1kb genomic reads at error rate $\sim$15%, full-length noisy Direct RNA or cDNA reads, and assembly contigs or closely related full chromosomes of hundreds of megabases in length. Minimap2 does split-read alignment, employs concave gap cost for long insertions and deletions (INDELs) and introduces new heuristics to reduce spurious alignments. It is 3-4 times faster than mainstream short-read mappers at comparable accuracy and $\ge$30 times faster at higher accuracy for both genomic and mRNA reads, surpassing most aligners specialized in one type of alignment. Availability and implementation: https://github.com/lh3/minimap2 Contact: hengli@broadinstitute.org
description: The final submitted version
$D=6$, $\mathcal{N}=(2,0)$ and $\mathcal{N}=(4,0)$ theories
Creators: name: Borsten, L.
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Using a convolutive field theoretic product, it is shown here that the "square" of an Abelian $D=6$, $\mathcal{N}=(2,0)$ theory yields the free $D=6$, $\mathcal{N}=(4,0)$ theory constructed by Hull, together with its generalised (super)gauge transformations. This offers a new perspective on the $(4, 0)$ theory and chiral theories of conformal gravity more generally, while at the same time extending the domain of the "gravity = gauge $\times$ gauge" paradigm.
description: References added, minor typos corrected and comments added
The Story of RAF Pilot Clifford Sumner
Creators: name: Project Team, Their Finest Hour
Publisher: name: University of Oxford
Year: 2024
Subjects: classificationCode: 430304
subject: British history
classificationCode: 430308
subject: European history (excl. British, classical Greek and Roman)
classificationCode: 430316
subject: International history

description: The contributor's uncle, Clifford Sumner, was a pilot of a Stirling Bomber in the RAF. He was stationed in Newmarket for his final flight. He was from Coventry and was born in 1918.
Asexuality vs. Sexual Interest/Arousal Disorder: Examining group differences in initial attention to sexual stimuli
Creators: name: Bradshaw, Julia
name: Brown, Natalie
name: Kingstone, Alan
name: Brotto, Lori
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Psychiatry and Psychology
subject: Medicine and Health Sciences
subject: Social and Behavioral Sciences
subject: Psychology
subject: FOS: Psychology

description: Attention is considered to be a critical part of the sexual response cycle, and researchers have differentiated between the roles of initial (involuntary) and subsequent (voluntary) attention paid to sexual stimuli as part of the facilitation of sexual arousal. Prior studies using eye-tracking methodologies have shown differing initial attention patterns to erotic stimuli between men and women, as well as between individuals of different sexual orientations. No study has directly compared initial attention to sexual stimuli in asexual individuals, defined by their lack of sexual attraction, to women with Sexual Interest/Arousal Disorder (SIAD), a disorder characterized by a reduced or absent interest in sex coupled with significant personal distress. The current study tested differences in the initial attention patterns of 29 asexual individuals (Mage = 26.56, SD = 4.80) and 25 heterosexual women with SIAD (Mage = 27.52, SD = 4.87), using eye-tracking. Participants were presented with sexual and neutral stimuli, and their initial eye movements and initial fixations to both image types and areas of erotic contact within sexual images were recorded. Mixed-model ANOVAs and t-tests were used to compare the two groups on the speed with which their initial fixations occurred, the duration of their initial fixations, and the proportion of initial fixations made to sexual stimuli. On two indices of initial attention, women with SIAD displayed an initial attention preference for sexual stimuli over neutral stimuli compared to asexual participants. This study adds to a growing literature on the distinction between asexuality and SIAD, indicating that differences in early attention may be a feature that differentiates the groups.
Interaction-induced interference in the integer quantum Hall effect
Creators: name: Sivan, I.
name: Bhattacharyya, R.
name: Choi, H. K.
name: Heiblum, M.
name: Feldman, D. E.
name: Mahalu, D.
name: Umansky, V.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: In recent interference experiments with an electronic Fabry-Perot interferometer (FPI), implemented in the integer quantum Hall effect regime, a flux periodicity of $h/2e$ was observed at bulk fillings $ν_B>2.5$. The halved periodicity was accompanied by an interfering charge $e^*=2e$, determined by shot noise measurements. Here, we present measurements, demonstrating that, counterintuitively, the coherence and the interference periodicity of the interfering chiral edge channel are solely determined by the coherence and the enclosed flux of the adjacent edge channel. Our results elucidate the important role of the latter and suggest that a neutral chiral edge mode plays a crucial role in the pairing phenomenon. Our findings reveal that the observed pairing of electrons is not a curious isolated phenomenon, but one of many manifestations of unexpected edge physics in the quantum Hall effect regime.
Additional file 2: of Genetically encoded calcium indicator with NTnC-like design and enhanced fluorescence contrast and kinetics
Creators: name: D. Doronin
name: N. Barykina
name: O. Subach
name: V. Sotskov
name: V. Plusnin
name: O. Ivleva
name: E. Isaakova
name: A. Varizhuk
name: G. Pozmogova
name: A. Malyshev
name: I. Smirnov
name: K. Piatkevich
name: K. Anokhin
name: G. Enikolopov
name: F. Subach
Publisher: name: figshare
Year: 2018
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Supplementary Methods. (PDF 194Â kb)
Bunias orientalis Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Brassicales
Brassicaceae
Bunias
Bunias orientalis

description: Bunias orientalis Linnaeus, Species Plantarum 2: 670. 1753.
"Habitat in Russia." RCN: 4880.
 Lectotype (Jonsell & Jarvis in Nordic J. Bot. 22: 68. 2002): Herb. Linn. No. 847.4 (LINN).
 Current name: Bunias orientalis L. (Brassicaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part B), pp. 343-369 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 365, DOI: 10.5281/zenodo.291971
Additional file 1: of A randomised controlled trial to test the effectiveness of decision training on assessorsâ ability to determine optimal fitness-to-drive recommendations for older or disabled drivers
Creators: name: Harries, Priscilla
name: Unsworth, Carolyn
name: Hulya Gokalp
name: Davies, Miranda
name: Tomlinson, Christopher
name: Harries, Luke
Publisher: name: figshare
Year: 2018
Subjects: subject: Developmental Biology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Cues and Cue levels for guiding fitness-to-drive recommendations. (DOCX 19 kb)
Trachyspermum copticum Link 1821
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Apiales
Apiaceae
Trachyspermum
Trachyspermum copticum

description: Bunium aromaticum Linnaeus, Mantissa Plantarum Altera: 218. 1771.
"Habitat in Creta. Syria." RCN: 1953.
 Lectotype (Watson in Jarvis & al. in Taxon 55: 208. 2006): Herb. Burser VIII: 43 (UPS).
 Current name: Trachyspermum copticum (L.) Link (Apiaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part B), pp. 343-369 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 365, DOI: 10.5281/zenodo.291971
Effect of sea quarks on single-spin asymmetries $A^{W^{\pm}}_{N}$ in transversely polarized pp collisions at RHIC
Creators: name: Tian, Fang
name: Gong, Chang
name: Ma, Bo-Qiang
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We calculate the single-spin asymmetries $A^{W^{\pm}}_{N}$ of $W^{\pm}$ bosons produced in transversely polarized pp collisions with the valence part of the up (u) and down (d) quark Sivers functions treated by an available parametrization and the light-cone quark spectator-diquark model respectively, while the sea part Sivers functions of u and d quarks treated as parametrization. Comparing our results with those from experimental data at RHIC, we find that the Sivers functions of sea quarks play an important role in the determination of the shapes of $A^{W^{\pm}}_{N}$. It is shown that $A^{W^{-}}_{N}$ is sensitive to u sea Sivers function, while $A^{W^{+}}_{N}$ to d sea Sivers function intuitively. The results show that the contributions of u and d sea Sivers functions are rather sizable and of the same sign, and their signs agree with that of d valence quarks and are opposite to that of u valence quarks.
description: 14 latex pages, 6 figures, final published version
Bunium bulbocastanum Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Apiales
Apiaceae
Bunium
Bunium bulbocastanum

description: Bunium bulbocastanum Linnaeus, Species Plantarum 1: 243. 1753.
"Habitat in Germania, Anglia, Gallia." RCN: 1952.
 Lectotype (Reduron & Jarvis in Jarvis & al., Regnum Veg. 127: 27. 1993): Herb. Burser VIII: 78 (UPS).
 Generitype of Bunium Linnaeus.
 Current name: Bunium bulbocastanum L. (Apiaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part B), pp. 343-369 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 365, DOI: 10.5281/zenodo.291971
Fault-tolerant quantum computation with non-deterministic entangling gates
Creators: name: Auger, James M.
name: Anwar, Hussain
name: Gimeno-Segovia, Mercedes
name: Stace, Thomas M.
name: Browne, Dan E.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Performing entangling gates between physical qubits is necessary for building a large-scale universal quantum computer, but in some physical implementations - for example, those that are based on linear optics or networks of ion traps - entangling gates can only be implemented probabilistically. In this work, we study the fault-tolerant performance of a topological cluster state scheme with local non-deterministic entanglement generation, where failed entangling gates (which correspond to bonds on the lattice representation of the cluster state) lead to a defective three-dimensional lattice with missing bonds. We present two approaches for dealing with missing bonds; the first is a non-adaptive scheme that requires no additional quantum processing, and the second is an adaptive scheme in which qubits can be measured in an alternative basis to effectively remove them from the lattice, hence eliminating their damaging effect and leading to better threshold performance. We find that a fault-tolerance threshold can still be observed with a bond-loss rate of 6.5% for the non-adaptive scheme, and a bond-loss rate as high as 14.5% for the adaptive scheme.
description: 5 pages, 3 figures
Additional file 1: Figure S1. of Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to cytotoxic action of p53 activator Nutlin-3
Creators: name: Boyarskikh, Ulyana
name: Pintus, Sergey
name: Mandrik, Nikita
name: Stelmashenko, Daria
name: Kiselev, Ilya
name: Evshin, Ivan
name: Sharipov, Ruslan
name: Stegmaier, Philip
name: Kolpakov, Fedor
name: Filipenko, Maxim
name: Kel, Alexander
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: R-script for Limma calculation. It includes options for blocks of correlated measurements (technical replicates). Figure S2. Comparison of genes belonging to different TRASPATHÂŽ pathways. Sixteen overlapping genes are the genes encoding proteasome subunits. PISK pathway is most different from other 3 related pathways of cell cycle control. Figure S3. A diagram of top 9 gene promoters (out of 62) with the results of CMA analysis. Exons are shown as blue boxes. The TF binding sites identified by CMA are shown as colored arrows. Gray background shows the position of the site cluster in the promoter. (DOCX 154Â kb)
Asteriscus aquaticus Less.
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Apiales
Apiaceae
Asteriscus
Asteriscus aquaticus

description: Buphthalmum aquaticum Linnaeus, Species Plantarum 2: 903. 1753.
"Habitat in Creta, Lusitania, Massiliae." RCN: 6530.
 Lectotype (Grierson in Davis, Fl. Turkey 5: 51. 1975): Herb. Clifford: 414, Buphthalmum 8 (BM-000647179).
 Current name: Asteriscus aquaticus (L.) Less. (Asteraceae).
 Note: Buphthalmum aquaticum was incorrectly given as the generitype by Jarvis & al. (Regnum Veg. 127: 27. 1993) in error for B. salicifolium L., as noted by Greuter (in Fl. Medit. 7: 43. 1997).
 Although Davis (Fl. Turkey 10: 238. 1988) did not list this as a name typified in the Flora, Grierson (in Davis, Fl. Turkey 5: 51. 1975) nevertheless specifically indicated the Clifford material as the type.
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part B), pp. 343-369 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 365, DOI: 10.5281/zenodo.291971
Borrichia arborescens
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Asterales
Asteraceae
Borrichia
Borrichia arborescens

description: Buphthalmum arborescens Linnaeus, Systema Naturae, ed. 10, 2: 1227. 1759.
["Habitat in America."] Sp. Pl. ed. 2, 2: 1273 (1763). RCN: 6528.
 Lectotype (Howard, Fl. Lesser Antilles 6: 533. 1989): [icon] " Buphthalmum fruticosum foliis fasciculatis " in Plumier in Burman, Pl. Amer.: 96, t. 106, f. 2. 1757.
 Current name: Borrichia arborescens (L.) DC. (Asteraceae).
 Note: Moore (in Fawcett & Rendle, Fl. Jamaica 7: 225. 1936) noted the existence of 1022.2 (LINN) and Clifford material (BM) but did not designate a type.
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part B), pp. 343-369 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 365, DOI: 10.5281/zenodo.291971
On the nonexistence of degenerate phase-shift discrete solitons in a dNLS nonlocal lattice
Creators: name: Penati, T.
name: Sansottera, M.
name: Paleari, S.
name: Koukouloyannis, V.
name: Kevrekidis, P. G.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Pattern Formation and Solitons (nlin.PS)
subject: FOS: Physical sciences

description: We consider a one-dimensional discrete nonlinear Schr{ö}dinger (dNLS) model featuring interactions beyond nearest neighbors. We are interested in the existence (or nonexistence) of phase-shift discrete solitons, which correspond to four-sites vortex solutions in the standard two-dimensional dNLS model (square lattice), of which this is a simpler variant. Due to the specific choice of lengths of the inter-site interactions, the vortex configurations considered present a degeneracy which causes the standard continuation techniques to be non-applicable. In the present one-dimensional case, the existence of a conserved quantity for the soliton profile (the so-called density current), together with a perturbative construction, leads to the nonexistence of any phase-shift discrete soliton which is at least $C^2$ with respect to the small coupling $ε$, in the limit of vanishing $ε$. If we assume the solution to be only $C^0$ in the same limit of $ε$, nonexistence is instead proved by studying the bifurcation equation of a Lyapunov-Schmidt reduction, expanded to suitably high orders. Specifically, we produce a nonexistence criterion whose efficiency we reveal in the cases of partial and full degeneracy of approximate solutions obtained via a leading order expansion.
description: 28 pages, slightly changed the title and other details
Oedera capensis Druce 1914
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Asterales
Asteraceae
Oedera
Oedera capensis

description: Buphthalmum capense Linnaeus, Systema Naturae, ed. 10, 2: 1227. 1759.
["Habitat ad Cap. b. spei."] Sp. Pl. ed. 2, 2: 1274 (1763). RCN: 6715.
 Replaced synonym of: Oedera prolifera L. (1771), nom. illeg.
 Lectotype (Anderberg in Jarvis & Turland in Taxon 47: 355. 1998): Herb. Linn. No. 1047.1 (LINN).
 Current name: Oedera capensis (L.) Druce (Asteraceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part B), pp. 343-369 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 365, DOI: 10.5281/zenodo.291971
Turbocharging Monte Carlo pricing for the rough Bergomi model
Creators: name: McCrickerd, Ryan
name: Pakkanen, Mikko S.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Computational Finance (q-fin.CP)
subject: Pricing of Securities (q-fin.PR)
subject: FOS: Economics and business
subject: 91G60, 91G20

description: The rough Bergomi model, introduced by Bayer, Friz and Gatheral [Quant. Finance 16(6), 887-904, 2016], is one of the recent rough volatility models that are consistent with the stylised fact of implied volatility surfaces being essentially time-invariant, and are able to capture the term structure of skew observed in equity markets. In the absence of analytical European option pricing methods for the model, we focus on reducing the runtime-adjusted variance of Monte Carlo implied volatilities, thereby contributing to the model's calibration by simulation. We employ a novel composition of variance reduction methods, immediately applicable to any conditionally log-normal stochastic volatility model. Assuming one targets implied volatility estimates with a given degree of confidence, thus calibration RMSE, the results we demonstrate equate to significant runtime reductions - roughly 20 times on average, across different correlation regimes.
description: 16 pages, 10 figures, v3: minor amendments and reformatted
Hard-Wall Confinement of a Fractional Quantum Hall Liquid
Creators: name: Macaluso, Elia
name: Carusotto, Iacopo
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: FOS: Physical sciences

description: We make use of numerical exact diagonalization calculations to explore the physics of $ν= 1/2$ bosonic fractional quantum Hall (FQH) droplets in the presence of experimentally realistic cylindrically symmetric hard-wall potentials. This kind of confinement is found to produce very different many-body spectra compared to a harmonic trap or the so-called extremely steep limit. For a relatively weak confinement, the degeneracies are lifted and the low-lying excited states organize themselves in energy branches that can be explained in terms of their Jack polynomial representation. For a strong confinement, a strong spatial deformation of the droplet is found, with an unexpected depletion of its central density.
description: 15 pages, 9 figures