cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Eugenia calycorectoides O. Berg, Linnaea
Creators: name: Uc Gala, Victor C.
name: Valdemarin, Karinne Sampaio
name: Lucas, Eve
name: Negrão, Raquel
name: Mazine, Fiorella F.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Myrtales
Myrtaceae
Eugenia
Eugenia calycorectoides

description: 12. * Eugenia calycorectoides O.Berg, Linnaea 29: 236 (1858)
EOO: 16,297.727 km ². AOO: 28 km ². Evaluation of IUCN: Vulnerable.
Eugenia calycorectoides is found only in Mexico in the states of San Luis Potosí, Veracruz, and Morelos, and the species is known only for 7 records, in two types of biomes, being the Humid Tropical Forest and the Humid Montane Forest. The species can be found from 300 to 1,300 m elev. The estimated extent of occurrence (EOO) falls within the threshold of Vulnerable category under criterion B, whilst the estimated area of occupancy (AOO) falls within the thresholds of the Endangered category. Eugenia calycorectoides is known to occur within the biological protection area “Parque Nacional Cañón de Rio Blanco”, located in Veracruz (DOF 1938). Therefore, there are only between 5 to 6 known locations and all of them have ongoing threats. A continuing decline of its habitat is inferred due to human activities (crop production, recurrent timber extraction in the region, urban development; CONABIO 2018). Considering that still there are remaining habitat available and scarce collection efforts within its entire range, a precautionary approach is taken here to classify Eugenia calycorectoides as Vulnerable (VU) as it meets the criteria B1ab (iii)+B2ab(iii).
Specimens examined:— MEXICO. Hidalgo: Rzedowski 12351 (MEXU!); San Luis Potosí: Castillo & Luna 14104 (MEXU!); Veracruz: Campos & Luna 14104 (MEXU!).
description: Published as part of Uc Gala, Victor C., Valdemarin, Karinne Sampaio, Lucas, Eve, Negrão, Raquel & Mazine, Fiorella F., 2023, Eugenia (Myrtaceae) from Mexico: checklist, distribution, and conservation assessments, pp. 99-140 in Phytotaxa 583 (2) on page 106, DOI: 10.11646/phytotaxa.583.2.1, http://zenodo.org/record/7609258
MOESM3 of Whole-genome sequence-based genomic prediction in laying chickens with different genomic relationship matrices to account for genetic architecture
Creators: name: Guiyan Ni
name: Cavero, David
name: Fangmann, Anna
name: Erbe, Malena
name: Simianer, Henner
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 3: Figure S2. Manhattan plot of absolute estimated SNP effects for traits FI and LR based on high-density (HD) array data and whole-genome sequence (WGS) data, respectively.
Additional file 3: of Residential distance to major roadways and cardiac structure in African Americans: cross-sectional results from the Jackson Heart Study
Creators: name: Weaver, Anne
name: Wellenius, Gregory
name: Wen-Chih Wu
name: DeMarc Hickson
name: Masoor Kamalesh
name: Wang, Yi
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Table A3. Results from linear or Logistic regression of residential distance to A1 or A2 road on markers of cardiac structure among participants in the Jackson Heart Study, excluding those with CVD (Nâ  =â  2976).a. aModels adjusted for age, sex, body mass index, alcohol consumption, education level, occupation, neighborhood socioeconomic status z-score, type of medical insurance, and smoking status. (DOCX 13 kb)
MOESM3 of Whole-genome sequence-based genomic prediction in laying chickens with different genomic relationship matrices to account for genetic architecture
Creators: name: Guiyan Ni
name: Cavero, David
name: Fangmann, Anna
name: Erbe, Malena
name: Simianer, Henner
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 3: Figure S2. Manhattan plot of absolute estimated SNP effects for traits FI and LR based on high-density (HD) array data and whole-genome sequence (WGS) data, respectively.
Eugenia cantuana Lundell, Wrightia
Creators: name: Uc Gala, Victor C.
name: Valdemarin, Karinne Sampaio
name: Lucas, Eve
name: Negrão, Raquel
name: Mazine, Fiorella F.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Myrtales
Myrtaceae
Eugenia
Eugenia cantuana

description: 13. * Eugenia cantuana Lundell, Wrightia 3: 122 (1965)
EOO: 126.662 km ². AOO: 12 km ². Evaluation of IUCN: Vulnerable.
Eugenia cantuana is endemic to Mexico and occurs in Morelos and Guerrero states, in Humid Montane Forests and in the Seasonally Dry Tropical Forests. The estimated extent of occurrence (EOO) and area of occupancy (AOO) fall between the thresholds of Critically Endangered and Endangered categories under the criterion B. There are only two known locations based in four records available: one location is represented by the records mainly in areas of well-preserved vegetation and lower anthropic pressure, in the borders of “Parque Nacional El Tepozteco” (state of Morelos), and another is within a locality known as Manchón Parotas (Guerrero). Although the species occurs within a protected area and in an area with low anthropic impact, from what is not possible to infer a continuing decline of habitat, it is near the urban area and any disruption caused by anthropic activities (fire events or agricultural or urban expansion) could drive the taxon to the CR or EX in a very short time. Therefore, considering its restricted area of occupancy and the number of locations, Eugenia cantuana is classified as Vulnerable (VU), as it meets the criterion D2.
Specimens examined:— MEXICO. Morelos: Soto 1391 (MEXU); Guerrero: Hilton 10076 (K!).
description: Published as part of Uc Gala, Victor C., Valdemarin, Karinne Sampaio, Lucas, Eve, Negrão, Raquel & Mazine, Fiorella F., 2023, Eugenia (Myrtaceae) from Mexico: checklist, distribution, and conservation assessments, pp. 99-140 in Phytotaxa 583 (2) on pages 106-107, DOI: 10.11646/phytotaxa.583.2.1, http://zenodo.org/record/7609258
Additional file 2: of Segmental duplications and evolutionary acquisition of UV damage response in the SPATA31 gene family of primates and humans
Creators: name: Bekpen, Cemalettin
name: KĂźnzel, Sven
name: Xie, Chen
name: Muthukrishnan Eaaswarkhanth
name: Yen-Lung Lin
name: Gokcumen, Omer
name: Akdis, Cezmi
name: Tautz, Diethard
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Copy number estimates of SPATA31 in different lineages of primates. For each genome, the read depth at all putative SPATA31 sites were recorded from the primary genome sequence reads, summed up, and normalized by genome-wide read depth to obtain the haploid copy number estimation (y-axis). The genome samples analyzed are listed on the x-axis, including a Denisovan, a Neandertal, a Ust_Ishim, nine modern humans, five chimpanzees, five orangutans, five rhesus monkeys. Samples are color coded according to their species. Individual ancient genomes were also color-coded. The color-coding is shown on the right of the plot. See Methods for the details of the SPATA31 copy number estimates in primates. (PDF 150 kb)
MOESM4 of Whole-genome sequence-based genomic prediction in laying chickens with different genomic relationship matrices to account for genetic architecture
Creators: name: Guiyan Ni
name: Cavero, David
name: Fangmann, Anna
name: Erbe, Malena
name: Simianer, Henner
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: Additional file 4: Figure S3. Manhattan plots of −(log10 P) for the three traits based on high density array data (panels 1–3) and the whole-genome sequence (WGS) data (panels 4–6). Significance among principal components (PC) was tested in advance with a Tracy Widom test and PC with P values less than 0.05 were used as fixed covariates in single-SNP GWAS runs.
Additional file 1: of Segmental duplications and evolutionary acquisition of UV damage response in the SPATA31 gene family of primates and humans
Creators: name: Bekpen, Cemalettin
name: KĂźnzel, Sven
name: Xie, Chen
name: Muthukrishnan Eaaswarkhanth
name: Yen-Lung Lin
name: Gokcumen, Omer
name: Akdis, Cezmi
name: Tautz, Diethard
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: Phylogeny of SPATA31 proteins. Neighbor-Joining tree [43] of SPATA31 protein sequences from human (capital letters) and mouse (small letters); bootstrap values (1000 replicates) are shown next to the branches [44]. The tree includes the distant gene families D and E. (PDF 362 kb)
Additional file 2: of Segmental duplications and evolutionary acquisition of UV damage response in the SPATA31 gene family of primates and humans
Creators: name: Bekpen, Cemalettin
name: KĂźnzel, Sven
name: Xie, Chen
name: Muthukrishnan Eaaswarkhanth
name: Yen-Lung Lin
name: Gokcumen, Omer
name: Akdis, Cezmi
name: Tautz, Diethard
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Copy number estimates of SPATA31 in different lineages of primates. For each genome, the read depth at all putative SPATA31 sites were recorded from the primary genome sequence reads, summed up, and normalized by genome-wide read depth to obtain the haploid copy number estimation (y-axis). The genome samples analyzed are listed on the x-axis, including a Denisovan, a Neandertal, a Ust_Ishim, nine modern humans, five chimpanzees, five orangutans, five rhesus monkeys. Samples are color coded according to their species. Individual ancient genomes were also color-coded. The color-coding is shown on the right of the plot. See Methods for the details of the SPATA31 copy number estimates in primates. (PDF 150 kb)
Eugenia capuli Hooker & Arnott, Bot. Beechey Voy.
Creators: name: Uc Gala, Victor C.
name: Valdemarin, Karinne Sampaio
name: Lucas, Eve
name: Negrão, Raquel
name: Mazine, Fiorella F.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Myrtales
Myrtaceae
Eugenia
Eugenia capuli

description: 14. Eugenia capuli (Schlechtendal & Chamisso) Hooker & Arnott, Bot. Beechey Voy.: 291 (1841)
Basionym: Myrtus capuli Schlechtendal & Chamisso (1830: 561).
EOO: 1,363,272.584 km ². AOO: 188 km ². Evaluation of IUCN: Least Concern.
Eugenia capuli has a wide distribution, known in 19 Mexican states, with records in the northwest, northeast (states along the Gulf of Mexico coast), central, southwest, and southeast Mexico and the Yucatan Peninsula, in addition to Central America (WCSP 2020). The estimated extent of occurrence (EOO) exceeds the thresholds for a threatened category under the criterion B. The area of occupancy (AOO) would likely exceed the thresholds of any threatened category when the remaining habitat available is taken in account. The biomes of occurrence are the Humid Tropical Forest, Humid Montane Forest and the Seasonally Dry Tropical Forest. Forty-eight records are known, most of which are collected in areas of biological protection of Federal or State administration such as La Reserva de la Biosfera el Cielo, in Tamaulipas, Reserva de la Biosfera Sierra Gorda, in Querétaro, Reserva de la Los Tuxtlas Biosphere, in Veracruz, El Tormento, in Campeche, Montes Azules Biosphere Reserve, Lacan-tun Biosphere Reserve, Selva el Ocote Biosphere Reserve, all in the state of Chiapas (Gobierno de Tamaulipas & TNC 2011, INE-SEMARNAP 1999d, CONANP 2006a, INE-SEMARNAP 2000a, CONANP 2001). According to the recent assessment by BGCI & IUCN (2019d), Eugenia capuli is currently in Least Concern (LC) category.
Specimens examined:— MEXICO. Campeche: Flores 10433 (MEXU!); Chiapas: Ton 4950 (MEXU!); Colima: Moran 5713 (MEXU!); Guerrero: González & Castañeda 226 (MEXU!); Hidalgo: Loera 18 (MEXU!); Jalisco: Matuda et al. 3015 (MEXU!); Mexico: Dorantes et al. 109 (MEXU!); Michoacán: Hahn 596 (MEXU!); Morelos: Quezada 512 (MEXU!); Nayarit: Núñez 1173 (MEXU!); Oaxaca: Cedillo 715 (MEXU!); Puebla: Ibarra et al. 5369 (MEXU!); Querétaro: Zamudio & Carranza 7241 (MEXU!); Quintana Roo: Cabrera y Cabrera 4624 (MEXU!); Sinaloa: Patiño & Magallanes 1466 (MEXU!); San Luis Potosí: Landrum et al. 3462 (MEXU!); Tabasco: Matuda 3018 (MEXU!); Tamaulipas: Hernández et al. 999 (MEXU!); Veracruz: Martínez-Calderón 1794 (K!). Belize: Whitefoord 10049 (MO); Guatemala: Steyermark 45961 (MO); Honduras: Standley 55197 (MO).
description: Published as part of Uc Gala, Victor C., Valdemarin, Karinne Sampaio, Lucas, Eve, Negrão, Raquel & Mazine, Fiorella F., 2023, Eugenia (Myrtaceae) from Mexico: checklist, distribution, and conservation assessments, pp. 99-140 in Phytotaxa 583 (2) on page 107, DOI: 10.11646/phytotaxa.583.2.1, http://zenodo.org/record/7609258
Additional file 1: of Segmental duplications and evolutionary acquisition of UV damage response in the SPATA31 gene family of primates and humans
Creators: name: Bekpen, Cemalettin
name: KĂźnzel, Sven
name: Xie, Chen
name: Muthukrishnan Eaaswarkhanth
name: Yen-Lung Lin
name: Gokcumen, Omer
name: Akdis, Cezmi
name: Tautz, Diethard
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Phylogeny of SPATA31 proteins. Neighbor-Joining tree [43] of SPATA31 protein sequences from human (capital letters) and mouse (small letters); bootstrap values (1000 replicates) are shown next to the branches [44]. The tree includes the distant gene families D and E. (PDF 362 kb)
MOESM1 of Predictive performance of genomic selection methods for carcass traits in Hanwoo beef cattle: impacts of the genetic architecture
Creators: name: Mehrban, Hossein
name: Lee, Deuk
name: Moradi, Mohammad
name: IlCho, Chung
name: Naserkheil, Masoumeh
name: IbĂĄĂąez-Escriche, Noelia
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 1: Figure S1. Estimates of effective population size ( $$N_{e}$$ N e ) in the past generations. Thresholds of 0.1 and 0.2 were considered for minor allelic frequency (MAF). The figure describes the changes of N e over generations for two different minor allelic frequencies (0.1 and 0.2).
MOESM4 of Whole-genome sequence-based genomic prediction in laying chickens with different genomic relationship matrices to account for genetic architecture
Creators: name: Guiyan Ni
name: Cavero, David
name: Fangmann, Anna
name: Erbe, Malena
name: Simianer, Henner
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Additional file 4: Figure S3. Manhattan plots of −(log10 P) for the three traits based on high density array data (panels 1–3) and the whole-genome sequence (WGS) data (panels 4–6). Significance among principal components (PC) was tested in advance with a Tracy Widom test and PC with P values less than 0.05 were used as fixed covariates in single-SNP GWAS runs.
Additional file 16: of Segmental duplications and evolutionary acquisition of UV damage response in the SPATA31 gene family of primates and humans
Creators: name: Bekpen, Cemalettin
name: Künzel, Sven
name: Xie, Chen
name: Muthukrishnan Eaaswarkhanth
name: Yen-Lung Lin
name: Gokcumen, Omer
name: Akdis, Cezmi
name: Tautz, Diethard
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Mental Health
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: PCR conditions and Primer List. PCR was performed in 20 μL reactions composed of 0.8 μL of a 10 mM dilution of the forward primer and reverse primer, 10 μL of Roche (11636103001) PCR Master Mix. The following PCR conditions were used (A): 3 min at 95 °C, followed by 40 cycles at 95 °C for 30 s, 55 °C 30 s, and 72 °C for 30 s followed by 7 min at 72 °C. The following real-time PCR conditions (B) were used: 3 min at 95 °C, followed by 50 cycles at 95 °C for 15 s, 55 °C 20 s, and 72 °C for 20 s elongation cycle. (PDF 93 kb)
MOESM7 of Whole-genome sequence-based genomic prediction in laying chickens with different genomic relationship matrices to account for genetic architecture
Creators: name: Guiyan Ni
name: Cavero, David
name: Fangmann, Anna
name: Erbe, Malena
name: Simianer, Henner
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 7: Figure S4. Regression coefficient of DGV on genomic prediction using different weighting factors based on high-density array data and whole-genome sequencing data.
Additional file 15: of Segmental duplications and evolutionary acquisition of UV damage response in the SPATA31 gene family of primates and humans
Creators: name: Bekpen, Cemalettin
name: KĂźnzel, Sven
name: Xie, Chen
name: Muthukrishnan Eaaswarkhanth
name: Yen-Lung Lin
name: Gokcumen, Omer
name: Akdis, Cezmi
name: Tautz, Diethard
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: List of CNVs of SPATA31 genes in individuals from Chinese, Finnish, Yoruba and Kenyan populations (PDF 88 kb)
MOESM1 of Predictive performance of genomic selection methods for carcass traits in Hanwoo beef cattle: impacts of the genetic architecture
Creators: name: Mehrban, Hossein
name: Lee, Deuk
name: Moradi, Mohammad
name: IlCho, Chung
name: Naserkheil, Masoumeh
name: IbĂĄĂąez-Escriche, Noelia
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 1: Figure S1. Estimates of effective population size ( $$N_{e}$$ N e ) in the past generations. Thresholds of 0.1 and 0.2 were considered for minor allelic frequency (MAF). The figure describes the changes of N e over generations for two different minor allelic frequencies (0.1 and 0.2).
Additional file 16: of Segmental duplications and evolutionary acquisition of UV damage response in the SPATA31 gene family of primates and humans
Creators: name: Bekpen, Cemalettin
name: Künzel, Sven
name: Xie, Chen
name: Muthukrishnan Eaaswarkhanth
name: Yen-Lung Lin
name: Gokcumen, Omer
name: Akdis, Cezmi
name: Tautz, Diethard
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology
subject: 110309 Infectious Diseases
subject: 60506 Virology
subject: Computational Biology

description: PCR conditions and Primer List. PCR was performed in 20 μL reactions composed of 0.8 μL of a 10 mM dilution of the forward primer and reverse primer, 10 μL of Roche (11636103001) PCR Master Mix. The following PCR conditions were used (A): 3 min at 95 °C, followed by 40 cycles at 95 °C for 30 s, 55 °C 30 s, and 72 °C for 30 s followed by 7 min at 72 °C. The following real-time PCR conditions (B) were used: 3 min at 95 °C, followed by 50 cycles at 95 °C for 15 s, 55 °C 20 s, and 72 °C for 20 s elongation cycle. (PDF 93 kb)
Neotrombicula (Neotrombicula) turkmenica Schluger
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Prostigmata
Trombiculidae
Neotrombicula
Neotrombicula turkmenica

description: Neotrombicula (Neotrombicula) turkmenica Schluger and Bel’skaja, 1972:
PAL
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 170, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
MOESM3 of Predictive performance of genomic selection methods for carcass traits in Hanwoo beef cattle: impacts of the genetic architecture
Creators: name: Mehrban, Hossein
name: Lee, Deuk
name: Moradi, Mohammad
name: IlCho, Chung
name: Naserkheil, Masoumeh
name: Ibáñez-Escriche, Noelia
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 3: Figure S2. Manhattan plots of genome-wide association analyses for four carcass traits. This figure provides the log10 p-values of the SNPs analyzed in the genome-wide association analyses for backfat thickness (BT), carcass weight (CW), eye muscle area (EMA), and marbling score (MS) traits. The horizontal lines represent the 5% significance level with a p value threshold of 1.46 × 10−6 for backfat thickness (BT), carcass weight (CW), eye muscle area (EMA), and marbling score (MS) traits.
MOESM7 of Whole-genome sequence-based genomic prediction in laying chickens with different genomic relationship matrices to account for genetic architecture
Creators: name: Guiyan Ni
name: Cavero, David
name: Fangmann, Anna
name: Erbe, Malena
name: Simianer, Henner
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 7: Figure S4. Regression coefficient of DGV on genomic prediction using different weighting factors based on high-density array data and whole-genome sequencing data.
MOESM6 of Whole-genome sequence-based genomic prediction in laying chickens with different genomic relationship matrices to account for genetic architecture
Creators: name: Guiyan Ni
name: Cavero, David
name: Fangmann, Anna
name: Erbe, Malena
name: Simianer, Henner
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Plant Biology

description: Additional file 6: Table S3. The optimal parameter in the training stage of BLUP|GA based on WGS data for each fold of fivefold cross-validation in each replicate.
Additional file 14: of Segmental duplications and evolutionary acquisition of UV damage response in the SPATA31 gene family of primates and humans
Creators: name: Bekpen, Cemalettin
name: KĂźnzel, Sven
name: Xie, Chen
name: Muthukrishnan Eaaswarkhanth
name: Yen-Lung Lin
name: Gokcumen, Omer
name: Akdis, Cezmi
name: Tautz, Diethard
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Evolutionary Biology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: 60506 Virology

description: Frame Shift Mutation analysis. The upper table provides the number of reads with frameshifts per number of reads for the different annotated SPATA31 genes, the lower table provides the respective percentages. (PDF 44 kb)
Eugenia capulioides Lundell, Contr. Univ.
Creators: name: Uc Gala, Victor C.
name: Valdemarin, Karinne Sampaio
name: Lucas, Eve
name: Negrão, Raquel
name: Mazine, Fiorella F.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Myrtales
Myrtaceae
Eugenia
Eugenia capulioides

description: 15. Eugenia capulioides Lundell, Contr. Univ. Michigan Herb. 7: 32 (1942)
EOO: 154,633.510 km ². AOO: 32 km ². Evaluation of IUCN: Least Concern.
Eugenia capulioides has a distribution on the Pacific coast, in the states of Chiapas, Guerrero and Morelos, in addition to Guatemala (Barrie 2020). The species can be found from 660 to 1,800 m elev. The estimated extent of occurrence (EOO) exceeds the threshold for a threatened category under criterion B, whilst the estimated area of occupancy (AOO) falls into the Endangered category. However, the area of occupancy (AOO) is considered underestimated due to the area of habitat available. Six collection records were found in Mexico, four in Chiapas and one for Guerrero and Morelos, and two in Guatemala. The occurring biomes are the Humid Tropical Forest and the Humid Montane Forest. The habitat is in a good state of conservation as it occurs within the “Sierra Mariscal” in Chiapas next to the “Reserva de la Biosfera El Triunfo”, in areas of conserved forest with low ecological degradation (Guerrero) and within the “Parque Nacional El Tepozteco” (Morelos) an important area for the conservation of mountain rainforests (CONABIO 2018, INE-SEMARNAP 1999b, DOF 1937). Therefore, Eugenia capulioides is classified as Least Concern (LC) considering it does not meet all the required criteria and occurs mainly in protected areas.
Specimens examined:— MEXICO. Chiapas: Matuda 4521 (MEXU!); Guerrero: Torres et al. 1752 (MEXU!); Morelos: Miranda, 66188 (MEXU!). Guatemala: Steyermark 51106 (F).
description: Published as part of Uc Gala, Victor C., Valdemarin, Karinne Sampaio, Lucas, Eve, Negrão, Raquel & Mazine, Fiorella F., 2023, Eugenia (Myrtaceae) from Mexico: checklist, distribution, and conservation assessments, pp. 99-140 in Phytotaxa 583 (2) on page 107, DOI: 10.11646/phytotaxa.583.2.1, http://zenodo.org/record/7609258
MOESM3 of Predictive performance of genomic selection methods for carcass traits in Hanwoo beef cattle: impacts of the genetic architecture
Creators: name: Mehrban, Hossein
name: Lee, Deuk
name: Moradi, Mohammad
name: IlCho, Chung
name: Naserkheil, Masoumeh
name: Ibáñez-Escriche, Noelia
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Mental Health

description: Additional file 3: Figure S2. Manhattan plots of genome-wide association analyses for four carcass traits. This figure provides the log10 p-values of the SNPs analyzed in the genome-wide association analyses for backfat thickness (BT), carcass weight (CW), eye muscle area (EMA), and marbling score (MS) traits. The horizontal lines represent the 5% significance level with a p value threshold of 1.46 × 10−6 for backfat thickness (BT), carcass weight (CW), eye muscle area (EMA), and marbling score (MS) traits.
Additional file 15: of Segmental duplications and evolutionary acquisition of UV damage response in the SPATA31 gene family of primates and humans
Creators: name: Bekpen, Cemalettin
name: KĂźnzel, Sven
name: Xie, Chen
name: Muthukrishnan Eaaswarkhanth
name: Yen-Lung Lin
name: Gokcumen, Omer
name: Akdis, Cezmi
name: Tautz, Diethard
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Infectious Diseases
subject: FOS: Health sciences

description: List of CNVs of SPATA31 genes in individuals from Chinese, Finnish, Yoruba and Kenyan populations (PDF 88 kb)
Additional file 13: of Segmental duplications and evolutionary acquisition of UV damage response in the SPATA31 gene family of primates and humans
Creators: name: Bekpen, Cemalettin
name: KĂźnzel, Sven
name: Xie, Chen
name: Muthukrishnan Eaaswarkhanth
name: Yen-Lung Lin
name: Gokcumen, Omer
name: Akdis, Cezmi
name: Tautz, Diethard
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: Experimental design for CRISPR/Cas targeted disruption SPATA31 genes in human. Scheme for the design of the targeted disruption of the open reading frames of SAPATA31 type A and type C genes (including alternative exons) by using CRISPR/Cas mediated mutagenesis [27]. Six single cell clones were isolated and identified to have different numbers (3-low (S5, S7, S12) and 3-high (S6, S8, S11)) of frame shift mutations. See Additional File 14 for details of this analysis. (PDF 4556 kb)
Additional file 14: of Segmental duplications and evolutionary acquisition of UV damage response in the SPATA31 gene family of primates and humans
Creators: name: Bekpen, Cemalettin
name: KĂźnzel, Sven
name: Xie, Chen
name: Muthukrishnan Eaaswarkhanth
name: Yen-Lung Lin
name: Gokcumen, Omer
name: Akdis, Cezmi
name: Tautz, Diethard
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Evolutionary Biology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Frame Shift Mutation analysis. The upper table provides the number of reads with frameshifts per number of reads for the different annotated SPATA31 genes, the lower table provides the respective percentages. (PDF 44 kb)
Eugenia cerrocacaoensis Barrie, Novon
Creators: name: Uc Gala, Victor C.
name: Valdemarin, Karinne Sampaio
name: Lucas, Eve
name: Negrão, Raquel
name: Mazine, Fiorella F.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Myrtales
Myrtaceae
Eugenia
Eugenia cerrocacaoensis

description: 16. Eugenia cerrocacaoensis Barrie, Novon 15: 7 (2005)
EOO: 30,355.546 km ². AOO: 12 km ². Evaluation of IUCN: Least Concern.
Eugenia cerrocacaoensis is an endemic species of the region known as Mesoamerica that covers the Mexican states of the Southeast and Costa Rica (WCSP 2020). In Mexico, two collections were recorded only in the state of Oaxaca, which occur in an area with good conservation status, with the collection zone not having a decline in the observed habitat and there are no obvious threats (CONABIO 2018). In the case of Costa Rica, the specimen collected in the Guanacaste National Park at an altitude of 1000 m, the area is heavily wooded and preserved. The biome of occurrence is the Humid Tropical Forest. The estimated extent of occurrence (EOO) exceeds the threshold for a threatened category under criterion B, whilst the estimated area of occupancy (AOO) falls into the Endangered category. However, the area of occupancy (AOO) is considered underestimated due to the area of habitat available. At present, Eugenia cerrocacaoensis is classified as Least Concern (LC).
Specimens examined:— MEXICO. Oaxaca: Velasco & Cruz 1337 (MEXU!). Costa Rica: Alfaro Vindas 92 (MO).
description: Published as part of Uc Gala, Victor C., Valdemarin, Karinne Sampaio, Lucas, Eve, Negrão, Raquel & Mazine, Fiorella F., 2023, Eugenia (Myrtaceae) from Mexico: checklist, distribution, and conservation assessments, pp. 99-140 in Phytotaxa 583 (2) on page 108, DOI: 10.11646/phytotaxa.583.2.1, http://zenodo.org/record/7609258
Additional file 12: of Segmental duplications and evolutionary acquisition of UV damage response in the SPATA31 gene family of primates and humans
Creators: name: Bekpen, Cemalettin
name: Künzel, Sven
name: Xie, Chen
name: Muthukrishnan Eaaswarkhanth
name: Yen-Lung Lin
name: Gokcumen, Omer
name: Akdis, Cezmi
name: Tautz, Diethard
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Physiology
subject: Ecology
subject: Developmental Biology
subject: Cancer
subject: Plant Biology

description: Quantification of SPATA31 re-localization within the nucleus upon UVC treatment of HFF cells. The figure depicts % of co-localization between SPATA31 and PER2 antibody within the nucleus upon stimulation with different UVC exposure times (horizontal). Cells were counted from a window of 63X randomly chosen confocal images, containing approximately 20 cells, assessed whether co-localization of SPATA31 in the nucleolus with PER2 occurs upon different UVC treatments. Cells were synchronized for 3 days by replacing IMDM growth medium (including 10% FBS) with serum free IMDM growth media. After 3 days of incubation, serum free growth medium was replaced with IMDM growth medium including 10% FBS. Six hours after addition of serum containing growth media, the growth medium was completely removed from the plates and the cells were irradiated with 0 (control), 10, 20, 40, 80 and 200 J/m2 UVC (See methods). After the appropriate UVC irradiation, fresh IMDM growth medium containing FBS was added to each plate and cells were kept 1 h of additional incubation in 37 °C including 5% CO2. After 1 h of additional incubation IMDM growth media was removed and cells were fixed immediately with−20 °C precooled 100% methanol for 10 min in a−20 °C freezer in dark conditions. Methanol was then removed and the cells were subjected to immunofluorescence analysis. All UV treatments showed a reduced number of cells with co-localization of SPATA31 in nucleolus with PER2 in different percentages. All differences to control were significant (P
Additional file 1: of Meet us on the phone: mobile phone programs for adolescent sexual and reproductive health in low-to-middle income countries
Creators: name: Ippoliti, Nicole
name: LâEngle, Kelly
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Science Policy
subject: Computational Biology

description: The call for resources for mobile phone approaches to advance adolescent sexual and reproductive health, issued by FHI 360. (DOCX 259 kb)
Eugenia chiapensis Lundell, Amer. Midl. Naturalist
Creators: name: Uc Gala, Victor C.
name: Valdemarin, Karinne Sampaio
name: Lucas, Eve
name: Negrão, Raquel
name: Mazine, Fiorella F.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Myrtales
Myrtaceae
Eugenia
Eugenia chiapensis

description: 17. * Eugenia chiapensis Lundell, Amer. Midl. Naturalist 20: 238 (1938)
EOO: 251.482 km ². AOO: 12 km ². Evaluation of IUCN: Vulnerable.
Eugenia chiapensis is an endemic species that occurs in the Humid Montane Forest and Temperate Forest in the state of Chiapas. The estimated extent of occurrence (EOO) and area of occupancy (AOO) fall into the Endangered category. There are only 3 known locations and all of them have different ongoing threats. Eugenia chiapensis occurs mainly in areas of well-preserved vegetation and under lower anthropic pressure (CONABIO 2018), such as in the vicinity of “Reserva de la Biosfera El Triunfo” in the state of Chiapas (INE-SEMARNAP 1999b) but near to urban areas, excluded from any conservation measure. In this case, any disruption caused by anthropic activities (fire events, agricultural or urban expansion) could drive the taxon to the CR or EX in a very short time. Therefore, considering the restricted area of occupancy and the number of locations, Eugenia chiapensis is classified as Vulnerable (VU), as it meets the criterion D2.
Specimen examined:— MEXICO. Chiapas: Heath & Long 945 (MEXU!).
description: Published as part of Uc Gala, Victor C., Valdemarin, Karinne Sampaio, Lucas, Eve, Negrão, Raquel & Mazine, Fiorella F., 2023, Eugenia (Myrtaceae) from Mexico: checklist, distribution, and conservation assessments, pp. 99-140 in Phytotaxa 583 (2) on page 108, DOI: 10.11646/phytotaxa.583.2.1, http://zenodo.org/record/7609258
Additional file 1: of Efficacy and safety of manual acupuncture manipulations with different frequencies on epigastric pain syndrome (EPS) in functional dyspepsia (FD) patients: study protocol for a randomized controlled trial
Creators: name: Hong, Shou-Hai
name: Ding, Sha-Sha
name: Wu, Fei
name: Bi, Ying
name: Xu, Fu
name: Wan, Yi-Jia
name: Xuan, Li-Hua
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: SPIRIT checklist. (DOCX 24 kb)
Additional file 11: Figure S4. of The unique genomic landscape surrounding the EPSPS gene in glyphosate resistant Amaranthus palmeri: a repetitive path to resistance
Creators: name: Molin, William
name: Wright, Alice
name: Lawton-Rauh, Amy
name: Saski, Christopher
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Marine Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: A. Alignment of the EPSPS cassette to A. tuberculatus draft genome assembly; B. the draft A. hypochondriacus assembly; and C. B. vulgaris. Alignments were restricted to 60% identity and match length of 100Â bp. (PDF 6565 kb)
Additional file 1: of Efficacy and safety of manual acupuncture manipulations with different frequencies on epigastric pain syndrome (EPS) in functional dyspepsia (FD) patients: study protocol for a randomized controlled trial
Creators: name: Hong, Shou-Hai
name: Ding, Sha-Sha
name: Wu, Fei
name: Bi, Ying
name: Xu, Fu
name: Wan, Yi-Jia
name: Xuan, Li-Hua
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: SPIRIT checklist. (DOCX 24 kb)
Additional file 4: of The pangenome of (Antarctic) Pseudoalteromonas bacteria: evolutionary and functional insights
Creators: name: Bosi, Emanuele
name: Fondi, Marco
name: Orlandini, Valerio
name: Perrin, Elena
name: Maida, Isabel
name: Pascale, Donatella De
name: Tutino, Maria
name: Parrilli, Ermenegilda
name: Giudice, Angelina Lo
name: Filloux, Alain
name: Fani, Renato
Publisher: name: Figshare
Year: 2017
Subjects: subject: Molecular Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Marine Biology
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Resistance genes. This file contains the results related to the presence of heavy metals/xenobiotics resistance genes identified with BacMet. (DOCX 507 kb)
Additional file 11: of Segmental duplications and evolutionary acquisition of UV damage response in the SPATA31 gene family of primates and humans
Creators: name: Bekpen, Cemalettin
name: KĂźnzel, Sven
name: Xie, Chen
name: Muthukrishnan Eaaswarkhanth
name: Yen-Lung Lin
name: Gokcumen, Omer
name: Akdis, Cezmi
name: Tautz, Diethard
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Expression and localization of SPATA31 protein in human tissues. Immunohistochemistry staining of SPATA31 protein in fresh frozen tissue sections of Lung CF (A), Sinus (B) and Tonsil allergic (C) (obtained from Swiss Institute of Allergy and Asthma Research, Davos, (SIAF)). Pre-immune_SPATA31, Pre_DAPI (pre-immune and DAPI merged), SPATA31 (1st bleed whole serum, 1:500), SPATA31/DAPI (SPATA31 antibody and DAPI merged). DAPI was used to visualize the nuclei. (PDF 20132 kb)
Eugenia choapamensis Standley, Publ. Field Columb. Mus., Bot. Ser.
Creators: name: Uc Gala, Victor C.
name: Valdemarin, Karinne Sampaio
name: Lucas, Eve
name: Negrão, Raquel
name: Mazine, Fiorella F.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Myrtales
Myrtaceae
Eugenia
Eugenia choapamensis

description: 18. Eugenia choapamensis Standley, Publ. Field Columb. Mus., Bot. Ser. 22: 93 (1940)
EOO: 138,775.826 km ². AOO: 60 km ². Evaluation of IUCN: Least Concern.
Eugenia choapamensis has a distribution in the Mesoamerican region from the Southeast and Gulf of Mexico to Honduras (WCSP 2020). In Mexico the species is known only in the states of Chiapas, Veracruz, and Oaxaca, ranging from 200 to 1,200 m elev. Nineteen collection records were found in the Mesoamerican region. The estimated extent of occurrence (EOO) exceeds the threshold for a threatened category under criterion B, whilst the estimated area of occupancy (AOO) falls into the Endangered category. However, the area of occupancy (AOO) is considered underestimated due to the area of habitat available. The habitat of occurrence is the Humid Tropical Forest. The habitat is under high threat in the region of Veracruz and north of Chiapas in the municipality of Pichucalco. The development of cities, expansion of the agricultural frontier, forest fires and other anthropic activities are the major threats from which is inferred a continuing decline of habitat quality. Eugenia choapamensis also occurs within the “Reserva de la Biosfera Selva El Ocote” located in Chiapas and in the “Selva las Chimalapas” in Oaxaca, where the habitat presents better conditions (CONABIO 2018). In Central American countries there are records the species, in Río Plátano Biosphere Reserve (Honduras) located, and only in areas of preserved Tropical Forests in Guatemala and Belize. As such, Eugenia choapamensis is classified here as Least Concern (LC).
Specimens examined:— MEXICO. Chiapas: Miranda 8488 (MEXU!); Oaxaca: Hernández 5 8, ASU); Veracruz: Vázquez et al. V-1759 (MEXU!). Belize: Whitefoord 3212 (BM); Guatemala: Contreras 9908 (LL); Honduras: Saunders 1230 (F).
description: Published as part of Uc Gala, Victor C., Valdemarin, Karinne Sampaio, Lucas, Eve, Negrão, Raquel & Mazine, Fiorella F., 2023, Eugenia (Myrtaceae) from Mexico: checklist, distribution, and conservation assessments, pp. 99-140 in Phytotaxa 583 (2) on page 108, DOI: 10.11646/phytotaxa.583.2.1, http://zenodo.org/record/7609258