cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
RNA Modulation in Asthma: Unraveling the Role of Splicing and Non-Coding RNAs in Disease Pathogenesis
Creators: name: Yuan, Xingxing
name: Yang, Liuxin
name: Gao, Jiawei
name: Wang, Bingyu
name: Li, Zhuying
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences

description: To synthesize the current understanding of RNA-based regulatory mechanisms, focusing on how RNA splicing and non-coding RNAs shape immune responses and airway remodeling in asthma, with the aim of exploring their potential as therapeutic targets for asthma treatment. Recent advances and emerging research in molecular biology and immunology related to RNA splicing, non-coding RNAs (lncRNAs, circRNAs), and N6-methyladenosine (m6A) RNA methylation in asthma pathogenesis. The review incorporates studies highlighting the roles of alternative RNA splicing, non-coding RNAs (lncRNAs and circRNAs), and RNA methylation (m6A) in regulating immune and inflammatory pathways involved in asthma. RNA splicing events, non-coding RNAs, and m6A RNA methylation are critical in modulating immune dysregulation, airway remodeling, and inflammation in asthma. These mechanisms influence key inflammatory pathways, mRNA stability, and the overall immune landscape of the disease. RNA splicing and non-coding RNAs represent promising areas of research for understanding asthma's immune pathology and hold potential as novel therapeutic targets for more effective treatment strategies.
Cutoff profile of the Metropolis biased card shuffling
Creators: name: Zhang, Lingfu
Publisher: name: arXiv
Year: 2022
Subjects: subject: Probability (math.PR)
subject: Discrete Mathematics (cs.DM)
subject: Mathematical Physics (math-ph)
subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: FOS: Computer and information sciences
subject: FOS: Physical sciences

description: We consider the Metropolis biased card shuffling (also called the multi-species ASEP on a finite interval or the random Metropolis scan). Its convergence to stationary was believed to exhibit a total-variation cutoff, and that was proved a few years ago by Labbé and Lacoin. In this paper, we prove that (for $N$ cards) the cutoff window is in the order of $N^{1/3}$, and the cutoff profile is given by the GOE Tracy-Widom distribution function. This confirms a conjecture by Bufetov and Nejjar. Our approach is different from Labbé-Lacoin, by comparing the card shuffling with the multi-species ASEP on $\mathbb{Z}$, and using Hecke algebra and recent ASEP shift-invariance and convergence results. Our result can also be viewed as a generalization of the Oriented Swap Process finishing time convergence of Bufetov-Gorin-Romik, which is the TASEP version (of our result).
description: 23 pages, 4 figures
STUDY OF PREVALENCE & OUTCOME OF CLINICAL RESPIRATORY DISTRESS IN PAEDIATRIC AGE GROUP- A PROSPECTIVE STUDY IN A TERTIARY CARE TEACHING HOSPITAL
Creators: name: Mohammed Abdul Wasiq
name: Dr. Debashree Priyadarshini
name: J. Bikrant Kumar Prusty
name: Mrutunjaya Dash
Publisher: name: Zenodo
Year: 2024
Subjects: Pneumonia, Premature Delivery, Prevalence, Outcome.

description: Abstract

Acute respiratory infection (ARI) is one of the frequent cause of mortality in children less than five years of age in India. The under-five morbidity is led by Lower Respiratory Tract Infections(LRTI) world wide. Respiratory distress is the frequent reason of emergency visit in pediatric age group. In December 2019, pneumonia due to a novel coronavirus (SARS-COV-2) emerged in the Wuhan city of China and caused increased number of cases and deaths worldwide. An understanding about epidemiology of the respiratory diseases as well as identification of predisposing risk factors and causative organisms is essential for prevention and successful treatment of mortality related to respiratory infections. This study was done with the aim to identify the prevalence and outcome of respiratory distress in pediatric age group between 1month to 5 years of age. It was a prospective study conducted at IMS and SUM Hospital, Bhubaneswar. The study period was 18 months (01.01.2019 to 30.06.2021). Total 210 children with respiratory distress were enrolled. It was observed that most of the children with respiratory distress belonged to lower socioeconomic class from rural areas. Most of them were born prematurely. Pneumonia was found to be the major cause of respiratory distress in these children during the study period.
Additional file 3: Figure S1. of Genome-wide SNP identification, linkage map construction and QTL mapping for seed mineral concentrations and contents in pea (Pisum sativum L.)
Creators: name: Ma, Yu
name: Coyne, Clarice
name: Grusak, Michael
name: Mazourek, Michael
name: Cheng, Peng
name: Main, Dorrie
name: McGee, Rebecca
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Frequency distribution histogram. This file contains the frequency distribution histograms of mineral concentration, mineral content and 100-seed weight. The solid bar indicates the Whitlow location and the open bar indicates the Spillman location. “A” indicates the ‘Aragorn’ and “K” indicates the ‘Kiflica’. (DOCX 267 kb)
Additional file 7: Figure S1. of Exposure to household furry pets influences the gut microbiota of infants at 3â  4Â months following various birth scenarios
Creators: name: Tun, Hein
name: Konya, Theodore
name: Takaro, Tim
name: Brook, Jeffrey
name: Chari, Radha
name: Field, Catherine
name: Guttman, David
name: Becker, Allan
name: Piush Mandhane
name: Turvey, Stuart
name: Padmaja Subbarao
name: Sears, Malcolm
name: Scott, James
name: Kozyrskyj, Anita
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Cell Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Pet exposure associated changes in gut microbiota of selected infants from Caucasian mothers with no anitobiotic exposure and no exclusi ve breastfeeding at 3 months following different birth scenarios. (PDF 839 kb)
Riederbergaceae Tedersoo 2024, fam. nov.
Creators: name: Tedersoo, Leho
name: Magurno, Franco
name: Alkahtani, Saad
name: Mikryukov, Vladimir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Riederbergales
Riederbergaceae

description: Riederbergaceae Tedersoo fam. nov.
Type genus.
Riederberga Tedersoo.
Description.
Covers the monophyletic group in Riederbergales (Fig. 2). Phylogenetically delimited as the least inclusive clade covering sequence accessions EUK 1602903, EUK 1602242 and EUK 1602243 (Suppl. material 3).
Notes.
Recognised based on eDNA sequences only. Currently includes Riederberga.
description: Published as part of Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir, 2024, Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes), pp. 249-271 in MycoKeys 107 on pages 249-271, DOI: 10.3897/mycokeys.107.125549
Riederberga Tedersoo 2024, gen. nov.
Creators: name: Tedersoo, Leho
name: Magurno, Franco
name: Alkahtani, Saad
name: Mikryukov, Vladimir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Tracheophyta
Magnoliopsida
Riederbergales
Riederbergaceae
Riederberga

description: Riederberga Tedersoo gen. nov.
Type species.
Riederberga sylviae Tedersoo.
Description.
Covers the monophyletic group in Riederbergaceae (Fig. 2). Phylogenetically delimited as the least inclusive clade covering sequence accessions EUK 1602903, EUK 1602242 and EUK 1602243 (Suppl. material 3).
Notes.
Based on ITS and LSU sequences, Riederberga is comprised of 5–6 species, some of which are represented by sequences EUK 1602859 (GSMc plot G 4770, Populus berolinensis dominated coppiced garden in Ubasalu, Estonia, 59.06755 ° N, 24.47842 ° E); EUK 1602912 (GSMc plot G 4772, Juniperus communis calcareous woodland soil in Kohatu, Estonia, 58.95934 ° N, 24.30017 ° E); EUK 1602761 (GSMc plot G 4434, mixed woodland soil in Kalli, Estonia, 58.53770 ° N, 24.06659 ° E); and EUK 1603687 (GSMc plot G 4229, Quercus robur woodland soil in Niidiaia, Estonia, 58.88603 ° N, 24.47280 ° E).
description: Published as part of Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir, 2024, Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes), pp. 249-271 in MycoKeys 107 on pages 249-271, DOI: 10.3897/mycokeys.107.125549
Fertility treatment and oral contraceptive discontinuation for identification of pregnancy planning in routinely collected health data – an application to analgesic and antibiotic utilisation
Creators: name: Tauqeer, F
name: Wood, M
name: Nordeng, H
name: Hjorth, S
Publisher: name: BioMed Central Ltd
Year: 2020

description: Background: Women with unplanned pregnancies use folic acid less frequently, and more often use potentially teratogenic medications in the first trimester. Yet most studies based on routinely collected data lack information on pregnancy planning. Further, only pregnancies proceeding beyond a certain gestational age appear in routinely collected data, creating the possibility for collider-stratification bias. If pregnancy intention could be identified, pregnancies could be ascertained earlier. This study aimed to investigate fertility treatment and discontinuation of oral contraception (OC) as proxies for pregnancy planning by describing variations in patterns of prescription fills for antibiotics and analgesics during the peri-pregnancy period by these proxies of pregnancy intention. Methods: Fertility treatment with clomiphene and discontinuation of OC were identified in the Norwegian Prescription Database (NorPD) and linked with data from the Medical Birth Registry of Norway for the years 2006 to 2017. Filled prescriptions for antibiotics and analgesics from NorPD were displayed for women on fertility treatment, women who discontinued OC before pregnancy, and women who discontinued during pregnancy. Results: Of 172,585 included pregnancies, fertility treatment was identified in 19,449, and OC discontinuation before or during pregnancy in 153,136. Women who discontinued OC during pregnancy were less likely to use preconception folic acid (25.4%) than women who discontinued before pregnancy (32.9%), and women on fertility treatment (51.0%). Proportions of first trimester prescription fills were 4.9% (analgesics) and 12.8% (antibiotics) for women who discontinued OC during pregnancy, compared to 4.0 and 11.4% in women who discontinued OC before pregnancy, and 4.7 and 11.0% in women on fertility treatment. Conclusions: There were no substantial differences in patterns of prescription fills for analgesics and antibiotics before or during pregnancy by fertility treatment and OC discontinuation. This suggests that there were few differences in medication use between women with planned and unplanned pregnancies, or that fertility treatment and timing of OC discontinuation from routinely collected health data cannot stand alone in the identification of unplanned pregnancies. A narrower definition of OC discontinuation during pregnancy seemed to be a better proxy, but this should be confirmed in other studies.
Riederberga sylviae Tedersoo 2024, sp. nov.
Creators: name: Tedersoo, Leho
name: Magurno, Franco
name: Alkahtani, Saad
name: Mikryukov, Vladimir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Tracheophyta
Magnoliopsida
Riederbergales
Riederbergaceae
Riederberga
Riederberga sylviae

description: Riederberga sylviae Tedersoo sp. nov.
Diagnosis.
Separation from other species of Riederberga based on the ITS region (ITS 2 positions 186–215 gctttggacggcatgcgaatctgcatcaca; one mismatch allowed) and LSU (positions 656–685 tcaccaatcgacgtcaatcggcatgcgtct; one mismatch allowed) as indicated in Fig. 14.
Type.
Soil eDNA sample TUE 128372 (holotype); eDNA sequence: EUK 1602903 (lectotype); GSMc plot G 5783, wet grassland (soil sample TUE 028372) in Altnurga, Estonia, 58.55682 ° N, 26.29259 ° E.
Description.
Other sequences: EUK 1604046 and EUK 1604047 (both type locality); and GU 055683 (ITS part considered; managed grassland soil in Riederberg, Austria, 48.25 ° N, 16.07 ° E), collected by Sylvia Klaubauf (Klaubauf et al. 2010).
Etymology.
Riederberg (German) refers to type locality; and Sylvia (German) refers to the first name of Sylvia Klaubauf, who first collected the materials of type species and the entire order from the type habitat.
Notes.
Found in Austria and Estonia, with ITS and LSU sequences displaying up to 1 % differences.
description: Published as part of Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir, 2024, Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes), pp. 249-271 in MycoKeys 107 on pages 249-271, DOI: 10.3897/mycokeys.107.125549
Hawking-type singularity theorems for worldvolume energy inequalities
Creators: name: Graf, Melanie
name: Kontou, Eleni-Alexandra
name: Ohanyan, Argam
name: Schinnerl, Benedict
Publisher: name: arXiv
Year: 2022
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Mathematical Physics (math-ph)
subject: Differential Geometry (math.DG)
subject: FOS: Physical sciences
subject: FOS: Mathematics
subject: 83C75, 53C50, 53B30, 70S20

description: The classical singularity theorems of R. Penrose and S. Hawking from the 1960s show that, given a pointwise energy condition (and some causality as well as initial assumptions), spacetimes cannot be geodesically complete. Despite their great success, the theorems leave room for physically relevant improvements, especially regarding the classical energy conditions as essentially any quantum field theory necessarily violates them. While singularity theorems with weakened energy conditions exist for worldline integral bounds, so called worldvolume bounds are in some cases more applicable than the worldline ones, such as the case of some massive free fields. In this paper we study integral Ricci curvature bounds based on worldvolume quantum strong energy inequalities. Under the additional assumption of a - potentially very negative - global timelike Ricci curvature bound, a Hawking type singularity theorem is proven. Finally, we apply the theorem to a cosmological scenario proving past geodesic incompleteness in cases where the worldline theorem was inconclusive.
description: 32 pages
Additional file 3: of Molecular evolution of globin genes in Gymnotiform electric fishes: relation to hypoxia tolerance
Creators: name: Tian, Ran
name: Losilla, Mauricio
name: Lu, Ying
name: Yang, Guang
name: Zakon, Harold
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Computational Biology

description: Further details of Brachyhypopomus gauderio transcriptome. (DOCX 133Â kb)
Ruuales Tedersoo 2024, ord. nov.
Creators: name: Tedersoo, Leho
name: Magurno, Franco
name: Alkahtani, Saad
name: Mikryukov, Vladimir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Ruuales

description: Ruuales Tedersoo ord. nov.
Type family.
Ruuaceae Tedersoo.
Description.
Covers the monophyletic group in Endogonomycetes (Fig. 2). Phylogenetically delimited as the least inclusive clade covering sequence accessions EUK 1603424, EUK 1600239, EUK 1600169 and EUK 1600180 (Suppl. material 3).
Notes.
Recognised based on eDNA sequences only. Currently includes Ruuaceae.
description: Published as part of Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir, 2024, Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes), pp. 249-271 in MycoKeys 107 on pages 249-271, DOI: 10.3897/mycokeys.107.125549
title: Conocimientos, abstracciones y experiencias de la educación en México, una mirada desde la creación y la formación educativa
Creators: name: Ortega Neri, Hilda María
name: Magallanes Delgado, María Del Refugio
name: Castillo Ruiz, Irma Faviola
name: Gutiérrez Hernández, Norma
Publisher: name: Astra Ediciones
Year: 2022
Subjects: subject: HUMANIDADES Y CIENCIAS DE LA CONDUCTA [4]
subject: Conocimientos
subject: Abstracciones
subject: Experiencias de la Educación
subject: Creación
subject: Formación educativa

description: Esta obra compilatoria, representa un importante esfuerzo por de- velar lo que sucede en los distintos espacios de educación formal y proponer intervenciones que sin duda contribuyen al desarrollo educa- tivo. Así, se constituye como un importante material para el desarrollo profesional docente.
Uncertainty Aware ML-based surrogate models for particle accelerators: A Study at the Fermilab Booster Accelerator Complex
Creators: name: Schram, Malachi
name: Rajput, Kishansingh
name: Li, Karthik Somayaji Peng
name: John, Jason St.
name: Sharma, Himanshu
Publisher: name: arXiv
Year: 2022
Subjects: subject: Accelerator Physics (physics.acc-ph)
subject: FOS: Physical sciences

description: Standard deep learning methods, such as Ensemble Models, Bayesian Neural Networks and Quantile Regression Models provide estimates to prediction uncertainties for data-driven deep learning models. However, they can be limited in their applications due to their heavy memory, inference cost, and ability to properly capture out-of-distribution uncertainties. Additionally, some of these models require post-training calibration which limits their ability to be used for continuous learning applications. In this paper, we present a new approach to provide prediction with calibrated uncertainties that includes out-of-distribution contributions and compare it to standard methods on the Fermi National Accelerator Laboratory (FNAL) Booster accelerator complex.
Ruuaceae Tedersoo 2024, fam. nov.
Creators: name: Tedersoo, Leho
name: Magurno, Franco
name: Alkahtani, Saad
name: Mikryukov, Vladimir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Ruuales
Ruuaceae

description: Ruuaceae Tedersoo fam. nov.
Type genus.
Ruua Tedersoo.
Description.
Covers the monophyletic group in Ruuales (Fig. 2). Phylogenetically delimited as the least inclusive clade covering sequence accessions EUK 1603424, EUK 1600239, EUK 1600169 and EUK 1600180 (Suppl. material 3).
Notes.
Recognised based on eDNA sequences only. Currently includes Ruua and another genus-level taxon represented by sequence EUK 1602764 (GSMc plot G 4189, Populus tremula forest soil in Tammsaare, Estonia, 57.84444 ° N, 27.20141 ° E).
description: Published as part of Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir, 2024, Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes), pp. 249-271 in MycoKeys 107 on pages 249-271, DOI: 10.3897/mycokeys.107.125549
Associations between prenatal acetaminophen exposure and child neurodevelopment: Truth, bias, or a bit of both?
Creators: name: Wood, M.E
Publisher: name: Blackwell Publishing Ltd
Year: 2020

description: What are we to make of a recent flood of studies suggesting that prenatal exposure to acetaminophen is associated with neurodevelopmental problems in toddlers and young children? Neurodevelopment is a notoriously slippery outcome to define, as it encompasses multiple phenotypes, including cognition and intelligence, psychiatric diagnoses, developmental milestone attainment, behavioral problems, motor and communication skills, and emotional regulation. Others have noted that many of the survey-based instruments used to measure neurodevelopment have uncertain predictive value for clinically-relevant developmental problems. Even assuming that studies have selected outcome measures that capture important neurodevelopmental phenotypes, studying the effect of acetaminophen on these outcomes is extraordinarily challenging. Nonetheless, acetaminophen is one of the most commonly used medications among pregnant women, and if prenatal exposure truly has a causal effect on neurodevelopment, even if this effect is small, it is important to understand it.
The role of time integration in energy conservation in Smoothed Particle Hydrodynamics fluid dynamics simulations
Creators: name: Cercos-Pita, Jose Luis
name: Merino-Alonso, Pablo Eleazar
name: Calderon-Sanchez, Javier
name: Duque, Daniel
Publisher: name: arXiv
Year: 2022
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: The choice of a time integration scheme is a crucial aspect of any transient fluid simulation, and Smoothed-Particle Hydrodynamics (SPH) is no exception. The influence of the time integration scheme on energy balance is here addressed. To do so, explicit expressions allowing to compute the deviations from the energy balance, induced by the time integration scheme, are provided. These expressions, computed \textit{a posteriori}, are valid for different integration methods. Such formulation is tested with the simulation of a two-dimensional non-viscous impact of two jets, with no artificial dissipation terms. To the best of our knowledge, this is the first stable simulation of a non-dissipative system with a weakly-compressible SPH method. A viscous case, the Taylor-Green vortex, has also been simulated. Results show that an implicit time integration scheme also behaves better in a viscous context.
description: 46 pages, 15 figures
Lemyra (Thyrgorina) biseriata
Creators: name: Singh, Navneet
name: Joshi, Rahul
name: Kirti, Jagbir Singh
name: Bisht, Santosh Singh
name: Param, Harsimranjeet Singh
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Arctiidae
Lemyra
Lemyra biseriata

description: 58. Lemyra (Thyrgorina) biseriata (Moore, 1877):
596 (Alpenus biseriatus)
= Alpenus flavens Moore, 1879: 39
Type locality: S. Andamans (Port Blair). This is by mistake, probably Assam (Thomas 1990, Dubatolov 2010)
Distribution: Assam, Meghalaya (Khasi Hills, Cherrapunjee) (Dubatolov 2010), Andaman and Nicobar (Chandra & Kumar 1992).
description: Published as part of Singh, Navneet, Joshi, Rahul, Kirti, Jagbir Singh, Bisht, Santosh Singh & Param, Harsimranjeet Singh, 2021, A catalogue of Indian Arctiinae (Erebidae, Lepidoptera), pp. 1-118 in Zootaxa 5058 (1) on page 24, DOI: 10.11646/zootaxa.5058.1.1, http://zenodo.org/record/5602576
Inadequate turbulent support in low-metallicity molecular clouds
Creators: name: Lin, Lingrui
name: Zhang, Zhi-Yu
name: Wang, Junzhi
name: Papadopoulos, Padelis P.
name: Shi, Yong
name: Gong, Yan
name: Sun, Yan
name: Sun, Yichen
name: Bisbas, Thomas G.
name: Romano, Donatella
name: Li, Di
name: Liu, Hauyu Baobab
name: Qiu, Keping
name: Liu, Lijie
name: Luo, Gan
name: Tsai, Chao-Wei
name: Wu, Jingwen
name: Feng, Siyi
name: Zhang, Bo
Publisher: name: arXiv
Year: 2025
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: The dynamic properties of molecular clouds are set by the interplay of their self-gravity, turbulence, external pressure and magnetic fields. Extended surveys of Galactic molecular clouds typically find that their kinetic energy ($E_{\rm k}$) counterbalances their self-gravitational energy ($E_{\rm g}$), setting their virial parameter $α_{\rm vir}=2E_{\rm k}/|E_{\rm g}|\approx1$. However, past studies either have been biased by the use of optically-thick lines or have been limited within the solar neighborhood and the inner Galaxy (Galactocentric radius $R_{\rm gc}
description: Published in Nature Astronomy. Comments are welcome! Supplementary data are available via Figshare (https://doi.org/10.6084/m9.figshare.27282924), including the 13CO line cubes/profiles, the H2 surface density maps, infrared/radio images and cloud distance probability density functions
Ruua Tedersoo 2024, gen. nov.
Creators: name: Tedersoo, Leho
name: Magurno, Franco
name: Alkahtani, Saad
name: Mikryukov, Vladimir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Tracheophyta
Magnoliopsida
Ruuales
Ruuaceae
Ruua

description: Ruua Tedersoo gen. nov.
Type species.
Ruua coralieae Tedersoo.
Description.
Covers the monophyletic group in Ruuaceae (Fig. 2). Phylogenetically delimited as the least inclusive clade covering sequence accessions EUK 1603424, EUK 1600239, EUK 1600169 and EUK 1600180 (Suppl. material 3).
Notes.
Based on ITS and LSU sequences, Ruua is comprised of 3–4 potential species that are represented by sequences EUK 1632165 (GSMc plot S 510, village habitat soil in Kihnu, Estonia, 58.1282 ° N, 23.9815 ° E); EUK 1603289 (GSMc plot G 4450, Fraxinus - Tilia forest soil in Nigula, Estonia, 58.0190 ° N, 24.6803 ° E); EUK 1103406 (freshwater in Skogaryd, Sweden, 58.37 ° N, 12.16 ° E); and FN 610984 (Fagus sylvatica forest soil in Breuil-Chenue, France, 47.301 ° N, 4.076 ° E), isolated by Coralie Damon (Damon et al. 2010).
description: Published as part of Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir, 2024, Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes), pp. 249-271 in MycoKeys 107 on pages 249-271, DOI: 10.3897/mycokeys.107.125549
Stability and decoherence analysis of the silicon vacancy in 3C-SiC
Creators: name: Fazio, Tommaso
name: Fisicaro, Giuseppe
name: Deretzis, Ioannis
name: Paladino, Elisabetta
name: La Magna, Antonino
Publisher: name: arXiv
Year: 2022
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: We study the silicon vacancy in 3C SiC as a color center of interest in the field of Quantum Technologies, focusing on its magnetic interaction with the SiC nuclear spin bath containing Si29 and C13 nuclei in their natural isotopic concentration. We calculate the system energetic and magnetic properties with ab initio methods based on the Density Functional Theory, identifying the neutral charge state of the silicon vacancy as the most favorable for p doped 3C SiC systems. We thereon evaluate the Free Induction Decay and the Hahn echo sequence on the electron spin interacting with the nuclear spin bath. Here, the Electron Spin Echo Envelope Modulation phenomenon, due to single nuclear spin flipping processes, and the overall decay are highlighted in the context of the Cluster Correlation Expansion theory. We find a non exponential coherence decay, which is a typical feature of solid state qubits subjected to low frequency 1/f noise from the environment.
description: 36 pages, 10 figures, 3 tables
Prenatal paracetamol exposure and neurodevelopmental outcomes in preschool-aged children
Creators: name: Trønnes, J.N
name: Wood, M
name: Ystrom, E
name: Nordeng, H
name: Lupattelli, A
Publisher: name: Blackwell Publishing Ltd
Year: 2020

description: Background: Recent studies have suggested an association between prenatal paracetamol exposure and adverse neurodevelopmental outcomes in children. However, these findings may be confounded by unmeasured factors related to maternal use of paracetamol and child outcomes. Objective: To examine the association between duration and timing of prenatal paracetamol exposure on parent-reported communication skills, behaviour, and temperament in preschool-aged children, with focus on the role of unmeasured confounding. Methods: We used data from the Norwegian Mother and Child Cohort Study. Linear and generalised linear models with inverse probability weights and robust standard errors were used to quantify the association between prenatal paracetamol exposure and continuous and categorical outcomes. Results: Of the 32 934 children included in our study, 8374 (25.4%), 4961 (15.1%), and 1791 (5.4%) were prenatally exposed to paracetamol in one, two, and three trimesters, respectively. Children exposed to paracetamol in two trimesters scored lower on shyness compared with unexposed children (β −0.62, 95% confidence interval [CI] −1.05, −0.19). Children exposed to paracetamol in three trimesters had a moderate increased risk of internalising behaviour problems (relative risk (RR) 1.36, 95% CI 1.02, 1.80) and borderline externalising behaviour problems (RR 1.22, 95% CI 0.93, 1.60) compared with unexposed children. Children exposed to paracetamol in 2nd/3rd trimester scored lower on shyness (β −0.32, 95% CI −0.66, 0.02) compared with unexposed children. Sensitivity analyses indicated that unmeasured confounders play an important role and may potentially bias the effect estimates away from the null. Conclusions: Timing of exposure and short-term use of paracetamol during pregnancy do not seem to pose any substantial risk of the outcomes examined. Although we found an association between paracetamol use in multiple trimesters and lower shyness and greater internalising behaviour in preschool-aged children, we cannot rule out chance or unmeasured confounding as possible explanations for these findings.
Ruua coralieae Tedersoo 2024, sp. nov.
Creators: name: Tedersoo, Leho
name: Magurno, Franco
name: Alkahtani, Saad
name: Mikryukov, Vladimir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Tracheophyta
Magnoliopsida
Ruuales
Ruuaceae
Ruua
Ruua coralieae

description: Ruua coralieae Tedersoo sp. nov.
Diagnosis.
Separation from other species of Ruua based on the ITS region (positions 217–243 gaaaaaaaaagaaaggaaagaaaaggt; one mismatch allowed) and LSU (positions 470–489 tagtgcacttgctttcgcac; no mismatch allowed) as indicated in Fig. 15.
Type.
eDNA sample TUE 101598 (holotype); eDNA sequence EUK 1603424; GSMc plot G 4464, Quercus robur forest (soil sample TUE 101598) in Ruu, Estonia, 59.45059 ° N, 25.22166 ° E.
Description.
Other sequences: EUK 1602853 and EUK 1600135 (type locality); EUK 1604050 (GSMc plot G 5002, Tilia - Quercus forest soil in Naissaar, Estonia, 59.57530 ° N, 24.53590 ° E); and EUK 1604051 (GSMc plot S 480, Populus - Picea forest soil in Käru, Estonia, 58.80407 ° N, 25.22249 ° E).
Etymology.
Ruu (Estonian) refers to type locality; and Coralie (French) refers to the first name of Coralie Damon, who collected the first materials belonging to this genus.
Notes.
Found from three sites in Estonia, with ITS and LSU sequences displaying up to 0.3 % differences.
description: Published as part of Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir, 2024, Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes), pp. 249-271 in MycoKeys 107 on pages 249-271, DOI: 10.3897/mycokeys.107.125549
Sampling from convex sets with a cold start using multiscale decompositions
Creators: name: Narayanan, Hariharan
name: Rajaraman, Amit
name: Srivastava, Piyush
Publisher: name: arXiv
Year: 2022
Subjects: subject: Data Structures and Algorithms (cs.DS)
subject: Computational Geometry (cs.CG)
subject: Probability (math.PR)
subject: FOS: Computer and information sciences
subject: FOS: Mathematics

description: Running a random walk in a convex body $K\subseteq\mathbb{R}^n$ is a standard approach to sample approximately uniformly from the body. The requirement is that from a suitable initial distribution, the distribution of the walk comes close to the uniform distribution $π_K$ on $K$ after a number of steps polynomial in $n$ and the aspect ratio $R/r$ (i.e., when $rB_2 \subseteq K \subseteq RB_{2}$).
 Proofs of rapid mixing of such walks often require the probability density $η_0$ of the initial distribution with respect to $π_K$ to be at most $\mathrm{poly}(n)$: this is called a "warm start". Achieving a warm start often requires non-trivial pre-processing before starting the random walk. This motivates proving rapid mixing from a "cold start", wherein $η_0$ can be as high as $\exp(\mathrm{poly}(n))$. Unlike warm starts, a cold start is usually trivial to achieve. However, a random walk need not mix rapidly from a cold start: an example being the well-known "ball walk". On the other hand, Lovász and Vempala proved that the "hit-and-run" random walk mixes rapidly from a cold start. For the related coordinate hit-and-run (CHR) walk, which has been found to be promising in computational experiments, rapid mixing from a warm start was proved only recently but the question of rapid mixing from a cold start remained open.
 We construct a family of random walks inspired by classical decompositions of subsets of $\mathbb{R}^n$ into countably many axis-aligned dyadic cubes. We show that even with a cold start, the mixing times of these walks are bounded by a polynomial in $n$ and the aspect ratio. Our main technical ingredient is an isoperimetric inequality for $K$ for a metric that magnifies distances between points close to the boundary of $K$. As a corollary, we show that the CHR walk also mixes rapidly both from a cold start and from a point not too close to the boundary of $K$.
description: Changes from v3: Added further discussion/details, and fixed some typos. This version should be close to the final version
Shot noise and universal Fano factor as characterization of strongly correlated metals
Creators: name: Wang, Yiming
name: Setty, Chandan
name: Sur, Shouvik
name: Chen, Liyang
name: Paschen, Silke
name: Natelson, Douglas
name: Si, Qimiao
Publisher: name: arXiv
Year: 2022
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Shot noise measures out-of-equilibrium current fluctuations and is a powerful tool to probe the nature of current-carrying excitations in quantum systems. Recent shot noise measurements in the heavy fermion strange metal YbRh$_2$Si$_2$ exhibit a strong suppression of the Fano factor ($F$) -- the ratio of the current noise to the average current in the DC limit. This system is representative of metals in which electron correlations are extremely strong. Here we carry out the first theoretical study on the shot noise of diffusive metals in the regime of strong correlations. A Boltzmann-Langevin equation formulation is constructed in a quasiparticle description in the presence of strong correlations. We find that $F = \sqrt{ 3}/{4}$ in such a correlation regime. Thus, we establish the aforementioned Fano factor as universal to Fermi liquids, and show that the Fano factor suppression observed in experiments on YbRh$_2$Si$_2$ necessitates a loss of the quasiparticles. Our work opens the door to systematic theoretical studies of shot noise as a means of characterizing strongly correlated metallic phases and materials.
description: 5+5 pages, 2+1 figures
Is the association between maternal alcohol consumption in pregnancy and pre-school child behavioural and emotional problems causal? Multiple approaches for controlling unmeasured confounding
Creators: name: Røysamb, E
name: Reichborn-Kjennerud, T.
name: Moen Eilertsen, E
name: Ystrom, E.
name: Lund, I.O
name: Wood, M
name: Gjerde, L.C
Publisher: name: Blackwell Publishing Ltd
Year: 2019

description: Background and aims: Hazardous drinking (i.e. alcohol consumption that places drinkers at risk for adverse health outcomes) during pregnancy is associated with adverse child outcomes. To address whether the associations are causal, we aimed to estimate the effect of maternal hazardous drinking during the first trimester on offspring emotional and behavioural problems throughout the pre-school age. We adjusted for: (1) measured confounding (e.g. smoking), (2) familial risk factors by sibling control design and (3) non-shared environmental risk factors by using hazardous drinking the 3 months before pregnancy as an instrumental variable. Design: Prospective cohort study. Participants were recruited between 1999 and 2009 at ultrasound examination offered to all pregnant women in Norway. Data were collected during the 17th and the 30th weeks of gestation, and when the children were aged 1.5, 3 and 5 years. Setting: Norway, 1999–2015. Participants: The sample consisted of 14 639 mothers with 25 744 offspring siblings from the Norwegian Mother and Child Cohort Study. Measurements: Respondents self-reported on: alcohol consumption, children's emotional problems (i.e. emotional reactive, anxiety/depression, somatic complaints) and children's behavioural problems (i.e. attention and aggressive behaviour) throughout pre-school age. We used longitudinal latent growth curve models to estimate the effect of maternal drinking during the first trimester on offspring emotional and behavioural problems. Findings: Most associations were strongly reduced after controlling for both familial and measured environmental risk factors. After adjustment, exposed children were more emotionally reactive [β = 2.33; 95% confidence interval (CI) = 0.13–4.53] and had more somatic complaints (β = 1.93; 95% CI = 0.09–3.77) at age 3, but not at age 5. Exposed children were less aggressive than unexposed siblings at age 5 (β = −2.27; 95% CI = –4.02 to –0.52). Conclusions: Children exposed to their mothers’ hazardous drinking during the first trimester appear to be more emotionally reactive and have more somatic complaints at age 3, but not at age 5, and are less aggressive at age 5 compared with unexposed siblings.
Additional file 1: Table S1. of The association of early life socioeconomic conditions with prediabetes and type 2 diabetes: results from the Maastricht study
Creators: name: Derks, Ivonne
name: Koster, Annemarie
name: Schram, Miranda
name: Stehouwer, Coen
name: Dagnelie, Pieter
name: Groffen, Danielle
name: Bosma, Hans
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Associations between early life socioeconomic conditions and health behaviour and BMI, nâ  =â  3263. (PDF 146 kb)
Performance Characterization of AutoNUMA Memory Tiering on Graph Analytics
Creators: name: Moura, Diego
name: Petrucci, Vinicius
name: Mosse, Daniel
Publisher: name: arXiv
Year: 2022
Subjects: subject: Performance (cs.PF)
subject: Operating Systems (cs.OS)
subject: FOS: Computer and information sciences

description: Non-Volatile Memory (NVM) can deliver higher density and lower cost per bit when compared with DRAM. Its main drawback is that it is slower than DRAM. On the other hand, DRAM has scalability problems due to its cost and energy consumption. NVM will likely coexist with DRAM in computer systems and the biggest challenge is to know which data to allocate on each type of memory. A state-of-the-art approach is AutoNUMA, in the Linux kernel. Prior work is limited to measuring AutoNUMA solely in terms of the application execution time, without understanding AutoNUMA's behavior. In this work we provide a more in-depth characterization of AutoNUMA, for instance, identifying where exactly a set of pages are allocated, while keeping track of promotion and demotion decisions performed by AutoNUMA. Our analysis shows that AutoNUMA's benefits can be modest when running graph processing applications, or graph analytics, because most pages have only one access over the entire execution time and other pages accesses have no temporal locality. We make a case for exploring application characteristics using object-level mappings between DRAM and NVM. Our preliminary experiments show that an object-level memory tiering can better capture the application behavior and reduce the execution time of graph analytics by 21% (avg) and 51% (max), when compared to AutoNUMA, while significantly reducing the number of memory accesses in NVM.
Safe Expectations: Current State and Future Directions for Medication Safety in Pregnancy Research
Creators: name: Wood, M.E
name: Toh, S
name: Andrade, S.E
Publisher: name: Excerpta Medica Inc.
Year: 2019

description: Medication use in pregnancy is common, but information about the safety of most medications in pregnant women or their infants is limited. In the absence of data from randomized clinical trials to guide decisions made by regulators, clinicians, and patients, we often have to rely on well-designed observational studies to generate valid evidence about the benefits and risks of medications in pregnancy. Spontaneous reporting, primary case–control and cohort studies, pregnancy exposure registries, and electronic health data have been used extensively for studying medication safety in pregnancy. This article discusses these data sources, their strengths and limitations, and possible strategies and approaches to mitigating limitations when planning studies or interpreting findings from the literature. Strategies discussed include combining data sources across institutional or national borders, developing and using more sophisticated study designs, and taking advantage of existing analytic methods for more complex data structures, such as time-varying exposure or unmeasured confounding. Finally, we make recommendations for study designs that aid in better risk-related communication.
Tammsaareales Tedersoo 2024, ord. nov.
Creators: name: Tedersoo, Leho
name: Magurno, Franco
name: Alkahtani, Saad
name: Mikryukov, Vladimir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Tammsaareales

description: Tammsaareales Tedersoo ord. nov.
Type family.
Tammsaareaceae Tedersoo.
Description.
Covers the monophyletic group in Endogonomycetes (Fig. 2). Phylogenetically delimited as the least inclusive clade covering sequence accessions EUK 1602762, EUK 1635767 and EUK 1602763 (Suppl. material 3).
Notes.
Recognised based on eDNA sequences only. Currently includes Tammsaareaceae.
description: Published as part of Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir, 2024, Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes), pp. 249-271 in MycoKeys 107 on pages 249-271, DOI: 10.3897/mycokeys.107.125549
MOESM1 of Individualized analysis reveals CpG sites with methylation aberrations in almost all lung adenocarcinoma tissues
Creators: name: Haidan Yan
name: Qingzhou Guan
name: He, Jun
name: Yunqing Lin
name: Zhang, Juan
name: Hongdong Li
name: Huaping Liu
name: Yunyan Gu
name: Guo, Zheng
name: He, Fei
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Hematology

description: Additional file 1: Table S1. Stable and reversal CpG site pairs identified in the samples measured by two platforms.
MOESM5 of Individualized analysis reveals CpG sites with methylation aberrations in almost all lung adenocarcinoma tissues
Creators: name: Haidan Yan
name: Qingzhou Guan
name: He, Jun
name: Yunqing Lin
name: Zhang, Juan
name: Hongdong Li
name: Huaping Liu
name: Yunyan Gu
name: Guo, Zheng
name: He, Fei
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Virology

description: Additional file 5: Table S5. The hypomethylation frequencies of 44 CpG sites in disease samples.
Additional file 3: of Ticagrelor versus clopidogrel in real-world patients with ST elevation myocardial infarction: 1-year results by propensity score analysis
Creators: name: Vercellino, Matteo
name: Nchez, Federico SĂ
name: Boasi, Valentina
name: Perri, Dino
name: Tacchi, Chiara
name: Gioel Secco
name: Cattunar, Stefano
name: Pistis, Gianfranco
name: Mascelli, Giovanni
Publisher: name: Figshare
Year: 2017
Subjects: subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Marine Biology

description: Intra-hospital causes of death. Data are expressed as percentage (frequency). (DOCX 11Â kb)
Additional file 13: Figure S5. of Thymosin beta 10 is a key regulator of tumorigenesis and metastasis and a novel serum marker in breast cancer
Creators: name: Zhang, Xin
name: Ren, Dong
name: Guo, Ling
name: Wang, Lan
name: Wu, Shu
name: Chuyong Lin
name: Liping Ye
name: Jinrong Zhu
name: Li, Jun
name: Libing Song
name: Huanxin Lin
name: Zhenyu He
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Activation of the Akt/FOXO signaling by TMSB10. a The GSEA plot shows that TMSB10 expression positively correlates with Akt-activated gene signatures and negatively correlates with the FOXO3/4-activated gene signatures. b TMSB10 expression level is positively associated with the T308 and S473 phosphorylation levels of AKT, but not with AKT level. Each bar represents the median valuesâ  Âąâ  quartile. (PDF 231 kb)
Additional file 1: of A systematic review of strategies to increase access to health services among children in low and middle income countries
Creators: name: Bright, Tess
name: Felix, Lambert
name: Kuper, Hannah
name: Polack, Sarah
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Summary of results of included studies. (DOCX 127 kb)