cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1 of Identification of mesenchymal-to-epithelial transition during heart regeneration through genetic lineage tracing
Creators: name: Gao, Zibei
name: Lu, Zhengkai
name: Meng, Jinyan
name: Lin, Chao-Po
name: Zhang, Hui
name: Tang, Juan
Publisher: name: figshare
Year: 2023
Subjects: subject: Biophysics
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: Additional file 1. Materials and Methods.
Lepraria antiquitatis Ach.
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Bryophyta
Bryopsida
Hypnales
Stereocaulaceae
Lepraria
Lepraria antiquitatis

description: Byssus antiquitatis Linnaeus, Species Plantarum 2: 1168. 1753.
"Habitat in aedium muris antiquissimis." RCN: 8404.
Type not designated.
Original material: none traced.
 Current name: Lepraria antiquitatis (L.) Ach. (Leprariaceae).
 Note: Ross & Irvine (in Taxon 16: 185. 1967) stated that the application of the name is uncertain. See Laundon (in Lichenologist 24: 340. 1992), who suggested that B. antiquitatis L. might be of mineral origin.
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part B), pp. 343-369 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 368, DOI: 10.5281/zenodo.291971
Buildup of Speaking Skills in an Online Learning Community: A Network-Analytic Exploration
Creators: name: Shafipour, Rasoul
name: Baten, Raiyan Abdul
name: Hasan, Md Kamrul
name: Ghoshal, Gourab
name: Mateos, Gonzalo
name: Hoque, Mohammed Ehsan
Publisher: name: arXiv
Year: 2017
Subjects: subject: Social and Information Networks (cs.SI)
subject: Human-Computer Interaction (cs.HC)
subject: FOS: Computer and information sciences

description: In this study, we explore peer-interaction effects in online networks on speaking skill development. In particular, we present an evidence for gradual buildup of skills in a small-group setting that has not been reported in the literature. We introduce a novel dataset of six online communities consisting of 158 participants focusing on improving their speaking skills. They video-record speeches for 5 prompts in 10 days and exchange comments and performance-ratings with their peers. We ask (i) whether the participants' ratings are affected by their interaction patterns with peers, and (ii) whether there is any gradual buildup of speaking skills in the communities towards homogeneity. To analyze the data, we employ tools from the emerging field of Graph Signal Processing (GSP). GSP enjoys a distinction from Social Network Analysis in that the latter is concerned primarily with the connection structures of graphs, while the former studies signals on top of graphs. We study the performance ratings of the participants as graph signals atop underlying interaction topologies. Total variation analysis of the graph signals show that the participants' rating differences decrease with time (slope=-0.04, p<0.01), while average ratings increase (slope=0.07, p<0.05)--thereby gradually building up the ratings towards community-wide homogeneity. We provide evidence for peer-influence through a prediction formulation. Our consensus-based prediction model outperforms baseline network-agnostic regression models by about 23% in predicting performance ratings. This, in turn, shows that participants' ratings are affected by their peers' ratings and the associated interaction patterns, corroborating previous findings. Then, we formulate a consensus-based diffusion model that captures these observations of peer-influence from our analyses.
Well-designed environmental regulation and firm performance: Swedish evidence on the Porter hypothesis and the effect of regulatory time strategies
Creators: name: Weiss, Jan
name: Stephan, Andreas
name: Anisimova, Tatiana
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Pharmacology
subject: Evolutionary Biology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Using recent data on a cross-section of Swedish chemical and pulp and paper firms, this paper provides novel empirical insights into the Porter hypothesis. Well-designed environmental regulation can stimulate firms’ innovative capabilities, while at the same time generating innovation offsets that may both offset net compliance costs and yield a competitive edge over those firms that are not affected by such regulations. In doing so, we also test the alleged effectiveness of regulatory time strategies in stimulating innovation activities of regulated firms. We find evidence for the effectiveness of such well-designed regulations: announced rather than existing regulation induces innovation and some innovation offsets. Our results imply that empirical tests of the Porter hypothesis that do not account for its dynamic nature, and that do not measure well-designed regulations, might provide misleading conclusions as to its validity.
Trentepohlia aurea Mart.
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Chlorophyta
Chlorophyceae
Trentepohliales
Trentepohliaceae
Trentepohlia
Trentepohlia aurea

description: Byssus aurea Linnaeus, Species Plantarum 2: 1168. 1753.
"Habitat in rupibus Arvoniae, Italiae." RCN: 8402.
 Lectotype (Irvine in Spencer & al. in Taxon, in press): [icon] " Byssus petraea crocea, glomerulis lanuginosis " in Dillenius, Hist. Musc.: 8, t. 1, f. 16. 1741. - Voucher: Herb. Dillenius (OXF).
 Current name: Trentepohlia aurea (L.) Mart. (Trentepohliaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part B), pp. 343-369 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 368, DOI: 10.5281/zenodo.291971
A note on diameter-Ramsey sets
Creators: name: Corsten, Jan
name: Frankl, Nóra
Publisher: name: arXiv
Year: 2017
Subjects: subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: 05D10

description: A finite set $A \subset \mathbb{R}^d$ is called $\textit{diameter-Ramsey}$ if for every $r \in \mathbb N$, there exists some $n \in \mathbb N$ and a finite set $B \subset \mathbb{R}^n$ with $\mathrm{diam}(A)=\mathrm{diam}(B)$ such that whenever $B$ is coloured with $r$ colours, there is a monochromatic set $A' \subset B$ which is congruent to $A$. We prove that sets of diameter $1$ with circumradius larger than $1/\sqrt{2}$ are not diameter-Ramsey. In particular, we obtain that triangles with an angle larger than $135^\circ$ are not diameter-Ramsey, improving a result of Frankl, Pach, Reiher and Rödl. Furthermore, we deduce that there are simplices which are almost regular but not diameter-Ramsey.
description: 4 pages
Omphalina umbellifera
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Stylommatophora
Zonitidae
Omphalina
Omphalina umbellifera

description: Byssus botryoides Linnaeus, Species Plantarum 2: 1169. 1753.
"Habitat in terra diutius humida, umbrosa, ut in ollis Hortulanorum." RCN: 8408.
 Lectotype (Redhead & Kuyper in Laursen & al., Arctic Alpine Mycol. 2: 321. 1987): [icon] " Byssus botryoides, saturate virens " in Dillenius, Hist. Musc.: 3, t. 1, f. 5. 1741. - Typotype: Herb. Dillenius (OXF). - Epitype (Jørgensen & al. in Bot. J. Linn. Soc. 115: 270. 1994): England. London Borough of Camden, Hampstead Heath, Herb. Sherard No. 1995 (OXF).
 Current name: Omphalina umbellifera (L.: Fr.) Quél. (Omphalinaceae).
 Note: See review by Jørgensen & al. (in Bot. J. Linn. Soc. 115: 270, 371, f. 3. 1994).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part B), pp. 343-369 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 368, DOI: 10.5281/zenodo.291971
QuantumOptics.jl: A Julia framework for simulating open quantum systems
Creators: name: Krämer, Sebastian
name: Plankensteiner, David
name: Ostermann, Laurin
name: Ritsch, Helmut
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We present an open source computational framework geared towards the efficient numerical investigation of open quantum systems written in the Julia programming language. Built exclusively in Julia and based on standard quantum optics notation, the toolbox offers speed comparable to low-level statically typed languages, without compromising on the accessibility and code readability found in dynamic languages. After introducing the framework, we highlight its features and showcase implementations of generic quantum models. Finally, we compare its usability and performance to two well-established and widely used numerical quantum libraries.
description: 11 pages, 7 figures
Stereoselective synthesis of functionalized vinyl ethers from allyl bromides activated by triethylamine
Creators: name: Aïcha Arfaoui
name: Saâdi, Fatma
name: Aziez, Asma Bourafai
name: Hammouda Chebbi
name: Fressigné, Catherine
name: Legros, Julien
name: Oulyadi, Hassan
name: Maddaluno, Jacques
name: Hassen Amri
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Neuroscience
subject: Pharmacology
subject: Biotechnology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: An efficient coupling reaction of allyl bromides with various alcohols as nucleophiles activated by triethylamine, leading to functionalized vinyl ethers in good yields and with full stereoselectivity.
The Thermodynamics and the Inverse Isotope Effect of superconducting PdH and PdD under pressure
Creators: name: Villa-Cortés, S.
name: Baquero, R.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We present in this paper the thermodynamics of superconducting PdH and PdD under pressure. We make use of a general method to calculate the thermodynamics under pressure within the Migdal-Eliashberg theory. We have considered the crystal lattice to be zincblende taking into account the experimental evidence for both PdH and PdD at temperatures below 55 K. We have studied, in particular, the changes induced by pressure in the critical temperature, $T_c$, in the specific heat jump at $T_c$, in the energy gap at $T=0K$, in the deviation function $D(t)$ and in the isotope effect coefficient, $α$. We get a very good agreement with experiment where this data exist. This method represents a basis on which the thermodynamics of other hydrides under pressure can be calculated.
description: 12 pages, 6 figures, 2 tables
Immunocastration-caused dysfunction of Père David’s deer (Elaphurus davidianus)
Creators: name: Chu, Pengfei
name: Yuan, Hongping
name: Zhang, Yichuan
name: Li, Haotian
name: Wang, Libo
name: Xie, Shengbin
name: Yuan, Baodong
Publisher: name: Brill Online
Year: 2024
Subjects: classificationCode: 310399
subject: Ecology not elsewhere classified

description: The population density of Père David’s deer (Elaphurus davidianus) in Jiangsu Dafeng Milu Nature Reserve was excessively high due to an overemphasis on population recovery, while ignoring the crucial relationship between population size and habitats. This study used immunocastration to capture four Père David’s deer and observed their behavior. Their blood was collected for sex hormone testing, transcriptomics, and metabolomics analysis. In addition, six uncastrated Père David’s deer were included as control group. The results showed that reproductive behavior was absent in castrated Père David’s deer, while castrated individuals exhibited a significant decrease in blood hormone testosterone concentration compared to uncastrated Père David’s deer. Transcriptome and metabolome analyses revealed 450 differentially expressed genes (DEGs) and five differentially expressed metabolites (DEMs), Combined analysis of transcriptome and metabolic data revealed a significant correlation between DEGs and DEMs. It shows that using immune castration to control the population of Père David’s deer may disrupt their cell apoptosis and disturb the cell cycle, leading to abnormal pathways and promoting the onset of many diseases. Therefore, a cautious approach should be adopted toward immune castration as a means of population control. This study can provide valuable references for the standardized management of Père David’s deer populations.
Additional file 2 of Identification of mesenchymal-to-epithelial transition during heart regeneration through genetic lineage tracing
Creators: name: Gao, Zibei
name: Lu, Zhengkai
name: Meng, Jinyan
name: Lin, Chao-Po
name: Zhang, Hui
name: Tang, Juan
Publisher: name: figshare
Year: 2023
Subjects: subject: Biophysics
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: Additional file 2. Supplementary figures 1–3.
Additional file 8: of Systematic identification of intergenic long-noncoding RNAs in mouse retinas using full-length isoform sequencing
Creators: name: Wan, Ying
name: Liu, Xiaoyang
name: Zheng, Dongwang
name: Wang, Yuying
name: Chen, Huan
name: Zhao, Xiaofeng
name: Liang, Guoqing
name: Yu, Dongliang
name: Gan, Lin
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology

description: File S1. Probes for in situ hybridization analysis of linc-3a, linc-3b and linc-3c. (DOC 33 kb)
Efficient syntheses of zoledronic acid as an active ingredient of a drug against osteoporosis
Creators: name: Nagy, Dávid Illés
name: Grün, Alajos
name: Lévay, Krisztina
name: Garadnay, Sándor
name: Greiner, István
name: Keglevich, György
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Hematology
subject: Plant Biology

description: The reaction of 1H-imidazol-1-ylacetic acid and two equivalents of phosphorus trichloride/phosphorous acid at 75 °C in sulfolane, or in the presence of catalytic amounts of [bmim][BF4] afforded zoledronic acid in yields up to 75%. The joint use of the ionic liquid additive and sulfolane as the solvent was synergetic affording highly valuable zoledronic acid in a record yield of 93%.
Hydrodictyon reticulatum Lagerh.
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Chlorophyta
Chlorophyceae
Sphaeropleales
Hydrodictyaceae
Hydrodictyon
Hydrodictyon reticulatum

description: Byssus cancellata Linnaeus, Systema Naturae, ed. 12, 2: 721. 1767.
"Habitat in aquis dulcibus; natans tamquam mucor virescenti-luteus." RCN: 8398.
 Lectotype (John in Spencer & al. in Taxon, in press): [icon] " Etwas Schlammmoss " in Ledermüller, Mikroskop. Gemüths- und Augen-Ergötzung: 139, t. 72. 1761.
 Current name: Hydrodictyon reticulatum (L.) Lagerh. (Hydrodictyaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part B), pp. 343-369 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 368, DOI: 10.5281/zenodo.291971
Metal-free synthesis of secondary amines by the reaction of tosyl triazene and aryl boronic acid
Creators: name: Manas Jyoti Sarma
name: Prodeep Phukan
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 20199 Astronomical and Space Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: A metal free noncatalytic amination process has been developed for the synthesis of N-substituted aniline using a new amine source. The amine source p-toluene sulfonyl triazene (PhN˭NNHTs) has been prepared by treating aryldiazonium salt with p-tosylamide. Various unsymmetrical amines could be synthesized by treating this reagent and boronic acid in toluene at 110 °C in the presence of DBU and 4 Å molecular sieve. A large variety of N-substituted aniline could be synthesized with moderate yield.
On the Light Massive Flavor Dependence of the Large Order Asymptotic Behavior and the Ambiguity of the Pole Mass
Creators: name: Hoang, Andre H.
name: Lepenik, Christopher
name: Preisser, Moritz
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We provide a systematic renormalization group formalism for the mass effects in the relation of the pole mass $m_Q^{\rm pole}$ and short-distance masses such as the $\overline{\rm MS}$ mass $\overline{m}_Q$ of a heavy quark $Q$, coming from virtual loop insertions of massive quarks lighter than $Q$. The formalism reflects the constraints from heavy quark symmetry and entails a combined matching and evolution procedure that allows to disentangle and successively integrate out the corrections coming from the lighter massive quarks and the momentum regions between them and to precisely control the large order asymptotic behavior. With the formalism we systematically sum logarithms of ratios of the lighter quark masses and $m_Q$, relate the QCD corrections for different external heavy quarks to each other, predict the ${\cal O}(α_s^4)$ virtual quark mass corrections in the pole-$\overline{\rm MS}$ mass relation, calculate the pole mass differences for the top, bottom and charm quarks with a precision of around $20$ MeV and analyze the decoupling of the lighter massive quark flavors at large orders. The summation of logarithms is most relevant for the top quark pole mass $m_t^{\rm pole}$, where the hierarchy to the bottom and charm quarks is large. We determine the ambiguity of the pole mass for top, bottom and charm quarks in different scenarios with massive or massless bottom and charm quarks in a way consistent with heavy quark symmetry, and we find that it is $250$ MeV. The ambiguity is larger than current projections for the precision of top quark mass measurements in the high-luminosity phase of the LHC.
description: 45 pages + appendix, 6 figures, v2: journal version
Chrysothrix candelaris J. R. Laundon
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Fungi
Ascomycota
Arthoniomycetes
Arthoniales
Chrysotrichaceae
Chrysothrix
Chrysothrix candelaris

description: Byssus candelaris Linnaeus, Species Plantarum 2: 1169. 1753.
"Habitat per omnes quatuor mundi plagas in corticibus arborum, parietibus antiquis, tectis diutius vento humido expositis." RCN: 8407.
 Lectotype (Ross & Irvine in Taxon 16: 185. 1967): [icon] " Byssus pulverulenta flava, lignis adnascens " in Dillenius, Hist. Musc.: 3, t. 1, f. 4. 1741. - Voucher: Herb. Dillenius (OXF). - Epitype (Jørgensen & al. in Bot. J. Linn. Soc. 115: 270, 371. 1994): England. London Borough of Lewisham, Blackheath, on timber, Herb. J.E. Smith (LINN-SM).
 Current name: Chrysothrix candelaris (L.) J.R. Laundon (Chrysotrichaceae).
 Note: See review by Jørgensen & al. (in Bot. J. Linn. Soc. 115: 270, 371. 1994).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part B), pp. 343-369 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 368, DOI: 10.5281/zenodo.291971
Mutual Aid and Healthcare Sharing Ministries
Creators: name: Van Horn, Andrew
name: Aktipis, Athena
name: Mercado, Denise
name: Guevara Beltran, Diego
name: Cronk, Lee
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Anthropology
subject: FOS: Sociology
subject: Social and Behavioral Sciences
subject: Psychology
subject: FOS: Psychology

description: This project investigates the extent to which people in the United States participate in mutual aid to mitigate challenges in healthcare and personal finance. This includes analysis of individual motivations for choosing need-based transfer strategies (e.g., healthcare sharing ministries) over debt-based transfer strategies (e.g., health insurance).
Pulsar Glitches in a Strangeon Star Model
Creators: name: Lai, X. Y.
name: Yun, C. A.
name: Lu, J. G.
name: Lv, G. L.
name: Wang, Z. J.
name: Xu, R. X.
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Pulsar-like compact stars provide us a unique laboratory to explore properties of dense matter at supra-nuclear densities. One of the models for pulsar-like stars is that they are totally composed of "strangeons", and in this paper we studied the pulsar glitches in a strangeon star model. Strangeon stars would be solidified during cooling, and the solid stars would be natural to have glitches as the result of starquakes. Based on the starquake model established before, we proposed that when the starquake occurs, the inner motion of the star which changes the moment of inertia and has impact on the glitch sizes, is divided into plastic flow and elastic motion. The plastic flow which is induced in the fractured part of the outer layer, would move tangentially to redistribute the matter of the star and would be hard to recover. The elastic motion, on the other hand, changes its shape and would recover significantly. Under this scenario, we could understand the behaviors of glitches without significant energy releasing, including the Crab and the Vela pulsars, in an uniform model. We derive the recovery coefficient as a function of glitch size, as well as the time interval between two successive glitches as the function of the released stress. Our results show consistency with observational data under reasonable ranges of parameters. The implications on the oblateness of the Crab and the Vela pulsars are discussed.
description: MNRAS, accepted
Iridium-catalyzed asymmetric hydrogenation of β-keto esters with f-amphox ligands
Creators: name: Qin, Chao
name: Xiu-Shuai Chen
name: Chuan-Jin Hou
name: Hongzhu Liu
name: Liu, Yan-Jun
name: Huang, De-Zhi
name: Hu, Xiang-Ping
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Biochemistry
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Hematology
subject: Plant Biology

description: The iridium-catalyzed asymmetric hydrogenation of β-keto esters with chiral tridentate P,N,N-ligands (f-amphox) has been developed. Under the optimized conditions, a wide range of β-keto esters can be hydrogenated smoothly, affording the corresponding β-hydroxy esters in good to excellent enantioselectivities (up to 95% ee).
Trentepohlia aurea Mart.
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Chlorophyta
Chlorophyceae
Trentepohliales
Trentepohliaceae
Trentepohlia
Trentepohlia aurea

description: Byssus cryptarum Linnaeus, Species Plantarum 2: 1168. 1753.
"Habitat in spelunca rupestri Medelpadiae." RCN: 403.
 Lectotype (Ross & Irvine in Taxon 16: 185. 1967): Herb. Linn. No. 1278.5 (LINN).
 Current name: Trentepohlia aurea (L.) Mart. (Trentepohliaceae).
 Note: Byssus Linnaeus, nom. rej. vs. Trentepohlia Mart.
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part B), pp. 343-369 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 368, DOI: 10.5281/zenodo.291971
Additional file 1 of Efficacy and acceptability of parent-only group cognitive behavioral intervention for treatment of anxiety disorder in children and adolescents: a meta-analysis of randomized controlled trials
Creators: name: Yin, Bangmin
name: Teng, Teng
name: Tong, Lyu
name: Li, Xuemei
name: Fan, Li
name: Zhou, Xinyu
name: Xie, Peng
Publisher: name: figshare
Year: 2021
Subjects: Medicine
Biotechnology
Cancer
Science Policy
Mental Health

description: Additional file 1: Table S1-S6. Literature search report: Cochrane (613), Embase (386), ProQuest (810), PsycINFO (559), PubMed (1393), Web of Science (3118) and Additional file 2
Aphanizomenon flos-aquae Bornet & Flahault
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Bacteria
Cyanobacteria
Cyanophyceae
Nostocales
Nostocaceae
Aphanizomenon
Aphanizomenon flos-Aquae

description: Byssus flos-aquae Linnaeus, Species Plantarum 2: 1168. 1753.
"Habitat in Mari & omni aqua, prima aestate; nocte descendit parum, die natat fere." RCN: 8397.
 Neotype (Pentecost in Spencer & al. in Taxon, in press): Rabenhorst, Algen Europas No. 1463, " Sphaerozyga flos aquae (Linn.)" (BM-000769430).
 Current name: Aphanizomenon flos-aquae (L.) Ralfs ex Bornet & Flahault (Nostocaceae).
 Note: Although Drouet & Dailey (in Butler Univ. Bot. Stud. 12: 145. 1956) attempted to typify the name using 1278.1 (LINN), this collection is annotated only by Linnaeus filius and is evidently a post-1753 addition to the herbarium and not original material for the name. For this reason, Ross & Irvine (in Taxon 16: 184. 1967) rejected this type choice.
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part B), pp. 343-369 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on pages 368-369, DOI: 10.5281/zenodo.291971
Harnessing transformations: Annual report 2023
Creators: name: CESAER
Publisher: name: Zenodo
Year: 2024

description: During 2023, our association engaged in seven key areas of work through our task forces:  Sustainability, Openness of Science & Technology, Learning & Teaching, Innovation, Benchmark, Human Resources, and Sustainable Funding.

For each of our areas of work, the report summarises the activities and deliverables of our bodies and highlights the impact we achieved. This is further exemplified by our ‘impact stories’ which dig deeper on four of our achievements on topics such as research security, generative AI, boosting success rates in Horizon Europe, and academic freedom.
Consistent Dalitz plot analysis of Cabibbo-favored $D^+ \to \bar{K} ππ^+$ decays
Creators: name: Niecknig, Franz
name: Kubis, Bastian
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: We resume the study of the Cabibbo-favored charmed-meson decays $D^+ \to \bar{K} ππ^+$ in a dispersive framework that satisfies unitarity, analyticity, and crossing symmetry by construction. The formalism explicitly describes the strong final-state interactions between all three decay products and relies on pion-pion and pion-kaon phase shift input. For the first time, we show that the $D^+ \to K_S π^0 π^+$ Dalitz plot obtained by the BESIII collaboration as well as the $D^+ \to K^- π^+ π^+$ Dalitz plot data by CLEO and FOCUS can be described consistently, exploiting the isospin relation between the two coupled decay channels that provides better constraints on the subtraction constants.
description: 8 pages, 2 figures; v2: discussion extended, references added, matches published version
Migration barriers for surface diffusion on a rigid lattice: challenges and solutions
Creators: name: Baibuz, Ekaterina
name: Vigonski, Simon
name: Lahtinen, Jyri
name: Zhao, Junlei
name: Jansson, Ville
name: Zadin, Vahur
name: Djurabekova, Flyura
Publisher: name: arXiv
Year: 2017
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Atomistic rigid lattice Kinetic Monte Carlo is an efficient method for simulating nano-objects and surfaces at timescales much longer than those accessible by molecular dynamics. A laborious part of constructing any Kinetic Monte Carlo model is, however, to calculate all migration barriers that are needed to give the probabilities for any atom jump event to occur in the simulations. One of the common methods of barrier calculations is Nudged Elastic Band. The number of barriers needed to fully describe simulated systems is typically between hundreds of thousands and millions. Calculations of such a large number of barriers of various processes is far from trivial. In this paper, we will discuss the challenges arising during barriers calculations on a surface and present a systematic and reliable tethering force approach to construct a rigid lattice barrier parameterization of face-centred and body-centred cubic metal lattices. We have produced several different barrier sets for Cu and for Fe that can be used for KMC simulations of processes on arbitrarily rough surfaces. The sets are published as Data in Brief articles and available for the use.
Many-body localization caused by temporal disorder
Creators: name: Mierzejewski, Marcin
name: Giergiel, Krzysztof
name: Sacha, Krzysztof
Publisher: name: arXiv
Year: 2017
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Quantum Gases (cond-mat.quant-gas)
subject: FOS: Physical sciences

description: The many-body localization (MBL) is commonly related to a strong spatial disorder. We show that MBL may alternatively be generated by adding a temporal disorder to periodically driven many-body systems. We reach this conclusion by mapping the evolution of such systems on the dynamics of the time-independent, disordered, Hubbard-like models. Our result opens the way to experimental studies of MBL in systems that reveal crystalline structures in the time domain. In particular, we discuss two relevant setups which can be implemented in experiments on ultra-cold atomic gases.
description: 6 pages, 2 figures, version accepted for publication in Phys. Rev. B as a Rapid Communication
Additional file 4 of Efficacy and acceptability of parent-only group cognitive behavioral intervention for treatment of anxiety disorder in children and adolescents: a meta-analysis of randomized controlled trials
Creators: name: Yin, Bangmin
name: Teng, Teng
name: Tong, Lyu
name: Li, Xuemei
name: Fan, Li
name: Zhou, Xinyu
name: Xie, Peng
Publisher: name: figshare
Year: 2021
Subjects: Medicine
Biotechnology
Cancer
Science Policy
Mental Health

description: Additional file 4. Graphical overview of the methodological quality of included studies.
Brownian motion surviving in the unstable cubic potential and the role of Maxwell's demon
Creators: name: Ornigotti, Luca
name: Ryabov, Artem
name: Holubec, Viktor
name: Filip, Radim
Publisher: name: arXiv
Year: 2017
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Trajectories of an overdamped particle in a highly unstable potential diverge so rapidly, that the variance of position grows much faster than its mean. Description of the dynamics by moments is therefore not informative. Instead, we propose and analyze local directly measurable characteristics, which overcome this limitation. We discuss the most probable particle position (position of the maximum of the probability density) and the local uncertainty in an unstable cubic potential, both in the transient regime and in the long-time limit. The maximum shifts against the acting force as a function of time and temperature. Simultaneously, the local uncertainty does not increase faster than the observable shift. In the long-time limit, the probability density naturally attains a quasi-stationary form. We explain this process as a stabilization via the measurement-feedback mechanism, the Maxwell demon, which works as an entropy pump. Rules for measurement and feedback naturally arise from basic properties of the unstable dynamics. Observed thermally induced effects are inherent in unstable systems. Their detailed understanding will stimulate the development of stochastic engines and amplifiers and later, their quantum counterparts.
Magnetization and functionalization of activated carbon prepared by oak shell biowaste for removal of Pb2+ from aqueous solutions
Creators: name: Adibmehr, Maryam
name: Faghihian, Hossein
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Plant Biology

description: In this research, the chemically treated activated carbon prepared by oak shells was magnetized and functionalized by dithizone. The adsorbent was then characterized by Fourier transform infrared, X-ray diffraction, scanning electron microscope, TG–DTG, and vibrating sample magnetometer techniques and its performance for removal of Pb2+ from aqueous solutions was studied under different experimental conditions. Under optimized condition, the adsorption capacity of 255 mg g−1 was obtained which was higher than the reported values. The adsorbent was selective in the presence of 500 mg L−1 of Na+, K+, and Mg2+, 200 mg L−1 of Zn2+ and and 80 mg L−1 of Hg2+. The experimental data was fitted to the Langmuir isotherm and pseudo-second-order kinetic models. The adsorbent was separated by magnetic field and regenerated by HCl solution.
Effect of partial root-zone drying irrigation (PRDI) on alfalfa available soil P
Creators: name: Zhang, Jing
name: Liu, Hui Xia
name: Wei, Xiao Xing
name: Guo, Zheng Gang
Publisher: name: Taylor & Francis
Year: 2023
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Plant Biology

description: This study focused on alfalfa (Medicago sativa) to investigate the effect of partial root-zone drying irrigation (PRDI) on N-fixing crops available soil P. A three-year field experiment was designed with two irrigation methods and four irrigation volumes. Two irrigation methods consisted of PRDI and conventional furrow irrigation (CFI), and four irrigation volumes were set as 70% ETc (alfalfa water requirement), 85% ETc, 100% ETc and 115% ETc. This study showed that the PRDI had no effect on alfalfa seasonal forage yield but increased alfalfa P uptake. The PRDI decreased the soil available P content and stock but had no effect on the total P content and stock, which demonstrates that effect of PRDI on crop available soil P was different when different P forms were used to estimate crop available soil P. This study also showed that the variation in the coefficient was below 3% between soil P (available or total P) contents and soil P stocks, indicating that soil P contents and stocks were similar when estimating alfalfa available soil P under PRDI conditions. The findings of this study present a pattern of estimating the N-fixing crops available soil P in relation to PRDI.
Geometric frustration and solid-solid transitions in model 2D tissue
Creators: name: Moshe, Michael
name: Bowick, Mark J.
name: Marchetti, M. Cristina
Publisher: name: arXiv
Year: 2017
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We study the mechanical behavior of two-dimensional cellular tissues by formulating the continuum limit of discrete vertex models based on an energy that penalizes departures from a target area $A_0$ and a target perimeter $P_0$ for the component cells of the tissue. As the dimensionless target shape index $s_0 = \frac{P_0}{\sqrt{A_0}}$ is varied, we find a transition from a soft elastic regime for compatible target perimeter and area to a stiffer nonlinear elastic regime frustrated by geometric incompatibility. We show that the ground state in the soft regime has a family of degenerate solutions associated with zero modes for the target area and perimeter. The onset of geometric incompatibility at a critical $s_0^c$ lifts this degeneracy. The resultant energy gap leads to a nonlinear elastic response distinct from that obtained in classical elasticity models. We draw an analogy between cellular tissues and anelastic deformations in solids.
description: 5 pages 4 figures
Standardising and harmonising research data policies in scholarly publishing
Creators: name: Astell, Mathias
name: Hrynaszkiewicz, Iain
name: Khodiyar, Varsha
name: Birukou, Aliaksandr
name: Amye Kenall
name: Sowmya Swaminathan
name: Springer Nature Admin
Publisher: name: figshare
Year: 2018
Subjects: subject: 100504 Data Communications
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: 160511 Research, Science and Technology Policy
subject: FOS: Political science
subject: Science Policy

description: To promote publication of reproducible research and support compliance with research funder and institution policies, in July 2016 Springer Nature became the first publisher to introduce a standardised, common framework for the research data policies for its scholarly journals. This poster highlights how these policies were created and implemented and provides details about the specifics of the different policies.
Hadron Resonance Gas with Repulsive Interactions and Fluctuations of Conserved Charges
Creators: name: Huovinen, P.
name: Petreczky, P.
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Lattice (hep-lat)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We discuss the role of repulsive baryon-baryon interactions in a hadron gas using relativistic virial expansion and repulsive mean field approaches. The fluctuations of the baryon number as well as strangeness-baryon correlations are calculated in the hadron resonance gas with repulsive interactions and compared with the recent lattice QCD results. In particular, we calculate the difference between the second and fourth order fluctuations and correlations of baryon number and strangeness, that have been proposed as probes of deconfinement. We show that for not too high temperatures these differences could be understood in terms of repulsive interactions.
description: 12pages, 2 figures, ReVTeX, published version, unexpanded mean field results added
Interference effect as resonance killer of newly observed charmoniumlike states $Y(4320)$ and $Y(4390)$
Creators: name: Chen, Dian-Yong
name: Liu, Xiang
name: Matsuki, Takayuki
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: In this letter, we decode the newly observed charmoniumlike states, $Y(4320)$ and $Y(4390)$, by introducing interference effect between $ψ(4160)$ and $ψ(4415)$, which plays a role of resonance killer for $Y(4320)$ and $Y(4390)$. It means that two newly reported charmoniumlike states are not genuine resonances, according to which we can naturally explain why two well-established charmonia $ψ(4160)$ and $ψ(4415)$ are missing in the cross sections of $e^+e^- \to π^+ π^- J/ψ$ and $π^+ π^- h_c$ simultaneously. To well describe the detailed data of these cross sections around $\sqrt{s}=4.2$ GeV, our study further illustrates that a charmoniumlike structure $Y(4220)$ must be introduced. As a charmonium, $Y(4220)$ should dominantly decay into its open-charm channel $e^+e^- \to D^0 π^+ D^{\ast-}$, which provides an extra support to $ψ(4S)$ assignment to $Y(4220)$. In fact, this interference effect introduced to explain $Y(4320)$ and $Y(4390)$ gives a typical example of non-resonant explanations to the observed $XYZ$ states, which should be paid more attention especially before identifying the observed $XYZ$ states as genuine resonances.
description: 5 pages, 4 figures
Lepraria incana Ach.
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Bryophyta
Bryopsida
Hypnales
Stereocaulaceae
Lepraria
Lepraria incana

description: Byssus incanus Linnaeus, Species Plantarum 2: 1169. 1753.
"Habitat solo glareoso, ad latera fossularum, juxta vias publicas." RCN: 8409.
 Lectotype (Laundon in Lichenologist 24: 333. 1992): [icon] " Byssus pulverulenta incana, farinae instar strata " in Dillenius, Hist. Musc.: 3, t. 1, f. 3. 1741. - Voucher: Herb. Dillenius (OXF). - Epitype (Jørgensen & al. in Bot. J. Linn. Soc. 115: 271, 371. 1994): Herb. Dillenius Tab. I, No. 3 (OXF).
 Current name: Lepraria incana (L.) Ach. (Leprariaceae).
 Note: Specific epithet spelled “incana” in the protologue.
 See review by Jørgensen & al. (in Bot. J. Linn. Soc. 115: 271, 371. 1994).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part B), pp. 343-369 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 369, DOI: 10.5281/zenodo.291971
Chiral magnetic textures in Ir/Fe/Co/Pt multilayers: Evolution and topological Hall signature
Creators: name: Raju, M.
name: Yagil, A.
name: Soumyanarayanan, Anjan
name: Tan, Anthony K. C.
name: Almoalem, A.
name: Auslaender, O. M.
name: Panagopoulos, C.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Skyrmions are topologically protected, two-dimensional, localized hedgehogs and whorls of spin. Originally invented as a concept in field theory for nuclear interactions, skyrmions are central to a wide range of phenomena in condensed matter. Their realization at room temperature (RT) in magnetic multilayers has generated considerable interest, fueled by technological prospects and the access granted to fundamental questions. The interaction of skyrmions with charge carriers gives rise to exotic electrodynamics, such as the topological Hall effect (THE), the Hall response to an emergent magnetic field, a manifestation of the skyrmion Berry-phase. The proposal that THE can be used to detect skyrmions needs to be tested quantitatively. For that it is imperative to develop comprehensive understanding of skyrmions and other chiral textures, and their electrical fingerprint. Here, using Hall transport and magnetic imaging, we track the evolution of magnetic textures and their THE signature in a technologically viable multilayer film as a function of temperature ($T$) and out-of-plane applied magnetic field ($H$). We show that topological Hall resistivity ($ρ_\mathrm{TH}$) scales with the density of isolated skyrmions ($n_\mathrm{sk}$) over a wide range of $T$, confirming the impact of the skyrmion Berry-phase on electronic transport. We find that at higher $n_\mathrm{sk}$ skyrmions cluster into worms which carry considerable topological charge, unlike topologically-trivial spin spirals. While we establish a qualitative agreement between $ρ_\mathrm{TH}(H,T)$ and areal density of topological charge $n_\mathrm{T}(H,T)$, our detailed quantitative analysis shows a much larger $ρ_\mathrm{TH}$ than the prevailing theory predicts for observed $n_\mathrm{T}$.
description: Major revision of the original version. The extensive Supplementary Information is available upon request
Terana caerulea Kuntze 1891
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Asterales
Asteraceae
Terana
Terana caerulea

description: Byssus phosphorea Linnaeus, Species Plantarum 2: 1168. 1753.
"Habitat in Europae lignis putrescentibus." RCN: 9399.
 Lectotype (Ross & Irvine in Taxon 16: 184. 1967): [icon] " Byssus lanuginosa violacea, lignis adnascens " in Dillenius, Hist. Musc.: 4, t. 1, f. 6. 1741. - Voucher: Herb. Dillenius (OXF).
 Current name: Terana caerulea (Lam.: Fr.) Kuntze (Phanerochaetaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part B), pp. 343-369 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 369, DOI: 10.5281/zenodo.291971
New universality class in three dimensions: The critical Blume-Capel model
Creators: name: Codello, Alessandro
name: Safari, Mahmoud
name: Vacca, Gian Paolo
name: Zanusso, Omar
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We study the Blume-Capel universality class in $d=\frac{10}{3}-ε$ dimensions. The RG flow is extracted by looking at poles in fractional dimension of three loop diagrams using $\overline{\rm MS}$. The theory is the only nontrivial universality class which admits an expansion to three dimensions with $ε=\frac{1}{3}<1$. We compute the relevant scaling exponents and estimate some of the OPE coefficients to the leading order. Our findings agree with and complement CFT results. Finally we discuss a family of nonunitary multicritical models which includes the Lee-Yang and Blume-Capel classes as special cases.
description: 5 pages, 1 figure, v2: new title, extended introduction, to appear in PRD