cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
title: Collective Teacher Efficacy and Effective Title I Eligible Schools: A Mixed Methods Approach
Creators: name: Mendenhall, Donald R.
Publisher: name: Utah State University
Year: 2024

description: Students living in poverty have historically scored lower than more affluent peers. However, research suggests that collective teacher efficacy (CTE) may be more strongly associated with student academic success than socioeconomic background. Therefore, this study identifies successful Title I eligible schools that also have high levels of collective teacher efficacy to identify methods for increasing CTE in schools. A mixed methods research study model is used to explain how two successful Title I schools were able to achieve academic success and high levels of CTE. The study finds some of the perceptions of school staff, and the actions and processes used by the school staff members to nurture and sustain collective teacher efficacy in their schools.
Additional file 5: of Global transcriptome analysis of Huperzia serrata and identification of critical genes involved in the biosynthesis of huperzine A
Creators: name: Mengquan Yang
name: Wenjing You
name: Shiwen Wu
name: Fan, Zhen
name: Baofu Xu
name: Mulan Zhu
name: Li, Xuan
name: Xiao, Youli
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Virology
subject: Computational Biology

description: LDC’s, CAO’s, and PKS’s multiple-tissues specific expression patterns analysis by heat map. (PDF 63 kb)
Additional file 3: Figure S3. of Atopic Dermatitis Anti-IgE Paediatric Trial (ADAPT): the role of anti-IgE in severe paediatric eczema: study protocol for a randomised controlled trial
Creators: name: Chan, Susan
name: Cornelius, Victoria
name: Chen, Tao
name: Radulovic, Suzana
name: Wan, Mandy
name: Rahi Jahan
name: Lack, Gideon
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: Gantt chart (timeline of the study, DOC). (DOCX 16 kb)
Hypercrosslinked polymers from the mechanosynthesis of coal tar products
Creators: name: Borrero-López, Antonio María
name: CELZARD, Alain
name: Fierro, Vanessa
Publisher: name: Zenodo
Year: 2022

description: This work is part of the UCGWATERplus project "Coal- and bio-based water remediation strategies for underground coal gasification and beyond" (https://www.ucgwaterplus.eu/), supported by the Research Fund for Coal and Steel of the European Union under Grant Agreement No. 101033964

Abstract of the oral presentation given at the Polymer Network Group conference, held in Rome, Italy, June 2023.
Additional file 4: of Global transcriptome analysis of Huperzia serrata and identification of critical genes involved in the biosynthesis of huperzine A
Creators: name: Mengquan Yang
name: Wenjing You
name: Shiwen Wu
name: Fan, Zhen
name: Baofu Xu
name: Mulan Zhu
name: Li, Xuan
name: Xiao, Youli
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Inorganic Chemistry
subject: Science Policy
subject: 60506 Virology
subject: Computational Biology

description: The ORF or amino acid sequences of three types (LDC, CAO, PKS) of enzymes identified from H. serrata and found in the transcriptome. LDC (HsLDC-X1, HsLDC-X2, HsLDC-X3, HsLDC-X4, HsLDC-X5, HsLDC-X6, AB915697.1, AB915696.1, Unigene94617, Unigene94988); CAO (HsCAO, CL4248.1, CL4248.2, CL4248.3); PKS (HsPKS1 (ABI94386.1), HsPKS2, HsPKS3, Unigene393, Unigene394, CL2724.2). (PDF 63Â kb)
Leptotrombidium (Leptotrombidium) sixinum Wen, Zhou, Chen, Wang and Zhang 1984
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Leptotrombidium
Leptotrombidium sixinum

description: Leptotrombidium (Leptotrombidium) sixinum Wen, Zhou, Chen, Wang and Zhang, 1984b:
PAL
Leptotrombidium sixinum, Stekolniknov 2013 [magnum group]
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 141, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Additional file 4: of Global transcriptome analysis of Huperzia serrata and identification of critical genes involved in the biosynthesis of huperzine A
Creators: name: Mengquan Yang
name: Wenjing You
name: Shiwen Wu
name: Fan, Zhen
name: Baofu Xu
name: Mulan Zhu
name: Li, Xuan
name: Xiao, Youli
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Inorganic Chemistry
subject: Science Policy
subject: Virology
subject: Computational Biology

description: The ORF or amino acid sequences of three types (LDC, CAO, PKS) of enzymes identified from H. serrata and found in the transcriptome. LDC (HsLDC-X1, HsLDC-X2, HsLDC-X3, HsLDC-X4, HsLDC-X5, HsLDC-X6, AB915697.1, AB915696.1, Unigene94617, Unigene94988); CAO (HsCAO, CL4248.1, CL4248.2, CL4248.3); PKS (HsPKS1 (ABI94386.1), HsPKS2, HsPKS3, Unigene393, Unigene394, CL2724.2). (PDF 63Â kb)
Additional file 2: Figure S2. of Atopic Dermatitis Anti-IgE Paediatric Trial (ADAPT): the role of anti-IgE in severe paediatric eczema: study protocol for a randomised controlled trial
Creators: name: Chan, Susan
name: Cornelius, Victoria
name: Chen, Tao
name: Radulovic, Suzana
name: Wan, Mandy
name: Rahi Jahan
name: Lack, Gideon
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Schedule of enrolment, interventions, and assessments. (DOC 68 kb)
PERCEPÇÃO DOS ACADÊMICOS DE ODONTOLOGIA SOBRE O CONSUMO DO CIGARRO ELETRÔNICO: UM ESTUDO TRANSVERSAL
Creators: name: Anna Clara de Jesus MELO
name: Anna Vitoria Souza de OLIVEIRA
name: Túlio Silva ROSA
name: Durval Nolasco das Neves NETO
name: Angélica Pereira ROCHA
name: Ana Lúcia Roselino RIBEIRO
Publisher: name: Zenodo
Year: 2024
Subjects: Cigarro eletrônico
Estudantes
Odontologia
Saúde Bucal

description: RESUMO

Os cigarros eletrônicos (CE) ganharam popularidade entre jovens e adultos jovens, assim como, profissionais da área da saúde, gerando crescente preocupação na esfera da saúde pública. Neste contexto, este estudo teve como objetivo avaliar o consumo e a percepção dos acadêmicos de Odontologia acerca dos cigarros eletrônicos e seus potenciais efeitos nocivos nos tecidos da cavidade oral. Realizado como uma pesquisa observacional transversal de abordagem quanti-qualitativa, foi empregado no estudo um questionário como instrumento de coleta de dados, direcionado a acadêmicos do 1º ao 10º período de uma faculdade do norte do Tocantins. A pesquisa foi aprovada pelo Comitê de Ética em Pesquisa (CAAE: 68034923.9.0000.0014). Dos 125 participantes que responderam ao questionário via formulário eletrônico do Google Forms, a maioria, 92 era do sexo feminino (73,6%), e com faixa etária 19 a 21 anos (51,2%). Notavelmente, 25 participantes admitiram o uso de cigarros eletrônicos (20%), frequentemente associados a uma variedade de sabores, com presença de nicotina e consumo simultâneo de bebidas alcoólicas. Dentre os resultados mais impactantes, está a resposta em relação ao conhecimento acerca das possíveis consequências do uso de cigarros eletrônicos para a saúde bucal. Dos 25 fumantes, 20 (80%) afirmaram estar cientes, mencionando potenciais complicações como câncer bucal, estomatite nicotínica, inflamação labial e xerostomia. Esses resultados sugerem que uma parcela dos acadêmicos de Odontologia do centro de ensino está exposta ao consumo de cigarros eletrônicos de forma consciente perante aos riscos, um comportamento preocupante à luz do conhecimento adquirido durante sua formação acadêmica sobre os impactos adversos desses dispositivos na cavidade bucal.
Additional file 2: Figure S2. of Atopic Dermatitis Anti-IgE Paediatric Trial (ADAPT): the role of anti-IgE in severe paediatric eczema: study protocol for a randomised controlled trial
Creators: name: Chan, Susan
name: Cornelius, Victoria
name: Chen, Tao
name: Radulovic, Suzana
name: Wan, Mandy
name: Rahi Jahan
name: Lack, Gideon
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: Schedule of enrolment, interventions, and assessments. (DOC 68 kb)
Additional file 2: of Global transcriptome analysis of Huperzia serrata and identification of critical genes involved in the biosynthesis of huperzine A
Creators: name: Mengquan Yang
name: Wenjing You
name: Shiwen Wu
name: Fan, Zhen
name: Baofu Xu
name: Mulan Zhu
name: Li, Xuan
name: Xiao, Youli
Publisher: name: Figshare
Year: 2017
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 60506 Virology

description: Summary of H. serrata RNA seq by two Next-Generation Sequencing Systems (PDF 44Â kb)
Leptotrombidium (Leptotrombidium) spicanisetum Yu, Yang and Gong 1986
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Leptotrombidium
Leptotrombidium spicanisetum

description: Leptotrombidium (Leptotrombidium) spicanisetum Yu, Yang and Gong, 1986:
PAL
Leptotrombidium spicanisetum, Stekolnikov 2013 [4 group]
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 141, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Ainsliaea Candolle 1838
Creators: name: Zhang, Mei-Jiao
name: Su, Xiang-Xiu
name: An, Chang
name: Li, Hong-Qing
name: Zhang, Zhen
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Asterales
Asteraceae
Ainsliaea

description: Key of species with only one flower in capitulum in Ainsliaea
1. Leaves partite; pappus biseriate; anther appendages pilose ................................................................................... Ainsliaea uniflora
- Leaves not lobed; pappus uniseriate; anther appendages glabrous .................................................................................................... 2
2. Abaxial leaf surface red.................................................................................................................... Ainsliaea polystachya (sp. nov.)
- Abaxial leaf surface green .................................................................................................................................................................. 3
3. Leaf blades narrowly elliptic or lanceolate; capitula arranged in unilateral racemes ................................... Ainsliaea simplicissima
- Leaf blades 7- to 11-palmatifid, lobes triangular; capitula arranged in open panicles................................... Ainsliaea lancangensis
description: Published as part of Zhang, Mei-Jiao, Su, Xiang-Xiu, An, Chang, Li, Hong-Qing & Zhang, Zhen, 2021, Ainsliaea polystachya (Asteraceae), a new species from Fujian, China based on morphological and molecular evidence, pp. 277-284 in Phytotaxa 497 (3) on page 283, DOI: 10.11646/phytotaxa.497.3.6, http://zenodo.org/record/5424057
Leptotrombidium (Leptotrombidium) spicatum Traub 1960
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Leptotrombidium
Leptotrombidium spicatum

description: Leptotrombidium (Leptotrombidium) spicatum Traub, 1960:
ORI
Leptotrombidium (Trombiculindus) spicatum, Vercammen-Grandjean 1965d
Leptotrombidium (Leptotrombidium) spicatum, Vercammen-Grandjean & Langston 1976
Leptotrombidium spicatum, Stekolnikov 2013 [alopeciatum group], 2021
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 141, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Leptogenys breviceps Viehmeyer 1914
Creators: name: Č, Peter Hlavá
name: Janda, Milan
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Leptogenys
Leptogenys breviceps

description: Host ant Leptogenys breviceps Viehmeyer, 1914
(Figs. 16, 17)
Leptogenys is a large genus of Ponerinae ants containing about 259 described species (Bolton et al. 2006) distributed in tropics of all zoogeographic regions. All Leptogenys species are predators feeding on other arthropods but many species developed different strategies for hunting (Steghaus-Kovac & Maschwitz 1993). There are only about ten species reported to hunt collectively, exhibiting the legionary behavior. All are known from the tropical Asia and Australia (Queensland) (Hölldobler & Wilson 1990). The holotype of Leptogenys breviceps comes from eastern Papua New Guinea (Wareo, Morobe province). This species is considered to be a member of L. processionalis „group“, containing species with mostly Indo-Malayan distribution (Wilson 1958b). Ants related to L. processionalis (Jerdon, 1851) are believed to conduct group raides when searching for prey (Wilson 1958a). The second author also witnessed group raiding behavior in L. breviceps during foraging, although predation was not directly observed. The investigated colony of L. breviceps was nesting in soil in the vicinity of a small pathway through grass undergrowth. The nest had multiple entrance holes and groups of ants were running among them. The surrounding vegetation was as a mixture of abandoned and active gardens, covered by patches of secondary re-growth forest, 5–15 years old. Wilson (1958b) reported L. breviceps from a secondary forest, as well as from a primary forest.
description: Published as part of Č, Peter Hlavá & Janda, Milan, 2009, Leptogenopapus mirabilis, a new genus and species of Lomechusini (Coleoptera: Staphylinidae, Aleocharinae) from Papua New Guinea associated with ants of the genus Leptogenys Roger, pp. 57-64 in Zootaxa 2062 on page 60, DOI: 10.5281/zenodo.186844
title: Achieving Responsible Anomaly Detection
Creators: name: Han, Xiao
Publisher: name: Utah State University
Year: 2024

description: In the digital transformation era, safeguarding online systems against anomalies – unusual patterns indicating potential threats or malfunctions – has become crucial. This dissertation embarks on enhancing the accuracy, explainability, and ethical integrity of anomaly detection systems. By integrating advanced machine learning techniques, it improves anomaly detection performance and incorporates fairness and explainability at its core.
The research tackles performance enhancement in anomaly detection by leveraging few-shot learning, demonstrating how systems can effectively identify anomalies with minimal training data. This approach overcomes data scarcity challenges. Reinforcement learning is employed to iteratively refine models, enhancing decision-making processes. Transfer learning enables the application of insights across domains, improving system versatility. The integration of Generative Pre-trained Transformer (GPT) models marks a significant advancement, offering enhanced precision in anomaly identification through sophisticated language modeling techniques.
Exploring explainability and root cause analysis, the dissertation introduces advanced frameworks that shed light on the mechanisms behind anomaly detections across different data types. InterpretableSAD enhances sequential log data analysis, pinpointing specific anomalous events to clarify detection processes. RootCLAM addresses tabular data anomalies through causal inference, identifying root causes and suggesting actionable mitigation strategies. The narrative extends to time series data with RecAD and AERCA; RecAD offers algorithmic recourse by proposing minimal-cost actions for correcting anomalies, while AERCA utilizes an autoencoder-based framework to unravel Granger causality, illuminating causative factors behind anomalies. These frameworks empower users with the knowledge and tools to understand and act upon findings, facilitating the identification of irregularities across diverse data landscapes.
Ethical integrity remains paramount, addressed through the CFAD framework, which ensures counterfactual fairness by embedding ethical principles directly into anomaly detection processes. This guarantees equitable treatment across scenarios, advocating for technologies that serve all users equitably and challenge inherent biases.
Extensive evaluations on various datasets demonstrate the proposed models' effectiveness in addressing anomaly detection challenges. This dissertation contributes to advancing techniques that are not only accurate but also interpretable and fair, promoting the responsible use of anomaly detection in real-world applications. This dissertation lays a solid foundation for further exploration into advanced anomaly detection techniques, promising to guide the development of even more robust, transparent, and equitable systems in the digital age.
Staphylinidae
Creators: name: Č, Peter Hlavá
name: Janda, Milan
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae

description: Checklist of Staphylinidae associated with Leptogenys
Leptogenys sp.
Wroughtonilla watanabei Maruyama, 2004 (Lomechusini). Laos. Zyras trapeziceps Dvořák, 1996 (Lomechusini). Northern Vietnam.
Leptogenys breviceps Viehmeyer, 1914
Leptogenopapus mirabilis sp. n. (Lomechusini). Papua New Guinea. Myrmedonota sp. (Lomechusini). Papua New Guinea. Unknown genus (Paederinae). Papua New Guinea.
Leptogenys diminuta (F. Smith, 1857)
Neowroughtonilla steghausae Kistner, 1989 (Lomechusini). Malaysia (Selangor, Ulu Gombak). Wroughtonilla lobopeltae Wasmann, 1899 (Lomechusini). India, Sri Lanka, Malay peninsula. = Astilbus migratorius Fauvel, 1903
Leptogenys sp. near diminuta
Leptogenophilus judithae Kistner, 1975 (Hoplandriini, new placement (Maruyama, personal communication)). Philippines (Luzon).
Leptogenoxenus wilsoni Kistner, 1975 (Lomechusini). Philippines (Luzon).
Leptogenys processionalis distinguenda (Emery, 1887)
Maschwitzia ulrichi Kistner, 1989 (Lomechusini). Malaysia (Selangor, Ulu Gombak). = Trachydonia leptogenophila Kistner, 2003
Leptogenys sp. near mutabilis (F. Smith, 1861)
Maschwitzia ulrichi Kistner, 1989 (Lomechusini). Malaysia (Selangor, Ulu Gombak). = Trachydonia leptogenophila Kistner, 2003
Togpelenys gigantea Kistner, 1989 (Lomechusini). Malaysia (Selangor, Ulu Gombak).
description: Published as part of Č, Peter Hlavá & Janda, Milan, 2009, Leptogenopapus mirabilis, a new genus and species of Lomechusini (Coleoptera: Staphylinidae, Aleocharinae) from Papua New Guinea associated with ants of the genus Leptogenys Roger, pp. 57-64 in Zootaxa 2062 on pages 61-63, DOI: 10.5281/zenodo.186844
MOESM1 of The combination of gas-phase fluorophore technology and automation to enable high-throughput analysis of plant respiration
Creators: name: Scafaro, Andrew
name: A. Negrini
name: O’Leary, Brendan
name: F. Rashid
name: Hayes, Lucy
name: Yuzhen Fan
name: Zhang, You
name: Chochois, Vincent
name: Badger, Murray
name: A. Millar
name: Atkin, Owen
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Medicine
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 1: Table S1. Technical reproducibility of the fluorophore instrument in measuring the chemical oxidation of cysteine. Figure S1. The measured and expected depletion of O2 though replacement of air with known volumes of pure CO2 gas. Figure S2. A representative 46-day-old wheat plant harvested for whole-plant respiration analysis. Figure S3. Derived respiration rates in the dark (Rdark) calculated from measurements between 5 and 20 min from experiment initiation using the various techniques.
Additional file 4: of Lessons learned from additional research analyses of unsolved clinical exome cases
Creators: name: Eldomery, Mohammad
name: Coban-Akdemir, Zeynep
name: Harel, Tamar
name: Rosenfeld, Jill
name: Gambin, Tomasz
name: AsbjĂ¸Rg Stray-Pedersen
name: SĂŠbastien KĂźry
name: Mercier, Sandra
name: Lessel, Davor
name: Denecke, Jonas
name: Wiszniewski, Wojciech
name: Penney, Samantha
name: Pengfei Liu
name: Weimin Bi
name: Lalani, Seema
name: Schaaf, Christian
name: Wangler, Michael
name: Bacino, Carlos
name: Lewis, Richard
name: Potocki, Lorraine
name: Graham, Brett
name: Belmont, John
name: Scaglia, Fernando
name: Orange, Jordan
name: Jhangiani, Shalini
name: Chiang, Theodore
name: Harsha Doddapaneni
name: Jianhong Hu
name: Muzny, Donna
name: Xia, Fan
name: Beaudet, Arthur
name: Boerwinkle, Eric
name: Eng, Christine
name: Plon, Sharon
name: V. Sutton
name: Gibbs, Richard
name: Posey, Jennifer
name: Yaping Yang
name: Lupski, James
Publisher: name: Figshare
Year: 2017
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology

description: Supplemental text. (DOCX 118 kb)
Sinorhagio Zhang, Yang & Ren, 2006, gen. nov.
Creators: name: Zhang, Kuiyan
name: Yang, Ding
name: Ren, Dong
Publisher: name: Zenodo
Year: 2006
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Rhagionidae
Sinorhagio

description: Genus Sinorhagio gen. nov.
Type species. Sinorhagio daohugouensis sp. nov.
Diagnosis. Flagellum long, nearly spine­like, tapering toward tip. Crossvein h located at middle of cell c and slightly beyond origin of Rs. Mouths of cell sc, cell r1 and cell r2+3 subequal in width; mouth of cell r4 much narrower than that of cell r2+3. Vein R2+3 long, straight apically; vein R5 ending slightly beyond wing tip. Rs nearly as long as trunk of R4+R5. Veins M1 and M2 convergent basally at cell d; vein CuA1 present and arising from cell bm (= basal medial). Cell cup closed with a short petiole apically.
Distribution. The genus is known from China only and is currently represented by one species.
Etymology. From Greek Sin (China) and the genus Rhagio.
Remarks. Among the four known genera, Sinorhagio gen. nov. is more similar to Kubekovia Kovalev, 1985 and Palaeobrachyceron Kovalev, 1981. The new genus could be placed next to Kubekovia Kovalev (including only one known species) as they are similar in the following characters: Rs long, cell r4 long, vein R5 ending slightly beyond wing tip, cell d slender, and mouth of cell m3 open wide. Both genera belong to the same geologic age, the Middle Jurassic. But Sinorhagio is is easily separated from Kubekovia Kovalev, 1985 by having crossvein h located at middle of cell c and slightly distal of the origin of Rs, the mouth of the cell r1 is nearly as wide as that of the cell r2+3, veins M1 and M2 are convergent basally at cell d, and the cell cup is closed with a short petiole apically. In Kubekovia, crossvein h is located at base of cell c and slightly proximal of the origin of Rs, the mouth of cell r1 is wider, the position of M2 is normal, and the cell cup is nearly closed without a petiole (Kalugina & Kovalev 1985, Nagatomi & Yang 1998).
The wing venation of Sinorhagio gen. nov. is similar to that of Palaeobrachyceron Kovalev, 1981 in having veins M1 and M2 convergent basally at cell d, cell cup is closed with a short petiole apically, but can be distinguished from Palaeobrachyceron by the long spine­like antenna, vein R2+3 long and straight apically, the mouth of cell r1 nearly as wide as that of cell r2+3, and cell bm and cell d slender. In Palaeobrachyceron, the antennal flagellum is coniform with a rather thick base, vein R2+3 is curved upward apically, the mouth of cell r2+3 is wider, cell bm is larger, and cell d is shorter and wider (Kovalev 1981, Nagatomi & Yang 1998).
description: Published as part of Zhang, Kuiyan, Yang, Ding & Ren, Dong, 2006, The first snipe fly (Diptera: Rhagionidae) from the Middle Jurassic of Inner Mongolia, China, pp. 51-57 in Zootaxa 1134 on pages 53-54, DOI: 10.5281/zenodo.171918
title: Hearing Race in the Social Studies: A Critical Interpretive Synthesis of Culturally Responsive, Relevant, and Sustaining Pedagogies
Creators: name: Washburn, Karen H.
Publisher: name: Utah State University
Year: 2024

description: With the growing population of linguistically, racially, and culturally diverse students in U.S. public schools, there is increasing disjuncture between current standardized policies and practices and the varied ways of knowing, being, and languaging of heterogeneous youth. Social studies researchers and educators have implemented culturally responsive, relevant, and sustaining pedagogies as tools to combat inequities within schooling for linguistically minoritized youth. To explore how the field of social studies has operationalized these pedagogies in research and practice, I conducted a critical interpretive synthesis of literature from 1995-present. In so doing, I used a raciolinguistic theoretical perspective to explore how social studies scholarship has accounted for issues of race, language, and Whiteness within their. conceptualizations and enactments of the pedagogies. Findings from this synthesis indicate that Whiteness persists within social studies research and practice that deem White mainstream language as the most appropriate language for social studies learning. Suggestions for future scholarship include problematizing conceptions of culture, monolingualism, and academic language; placing the onus of linguistic and literate change on researchers and educators; and confronting the racialization of linguistically minoritized youth through the enactment of anti-colonial language research and practice in the social studies.
Leptotrombidium (Leptotrombidium) spicapilum Vercammen-Grandjean and Langston 1976
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Leptotrombidium
Leptotrombidium spicapilum

description: Leptotrombidium (Leptotrombidium) spicapilum Vercammen-Grandjean and Langston, 1976:
ORI
Leptotrombidium spicapilum, Stekolnikov 2013 [deliense group], 2021
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 141, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Sinorhagio daohugouensis Zhang, Yang & Ren, 2006, sp. nov.
Creators: name: Zhang, Kuiyan
name: Yang, Ding
name: Ren, Dong
Publisher: name: Zenodo
Year: 2006
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Rhagionidae
Sinorhagio
Sinorhagio daohugouensis

description: Sinorhagio daohugouensis sp. nov. (Figs. 3–4)
Description. Female body length 10.1 mm, wing length 8.0 mm, wing width 2.9 mm.
Head subround in lateral view, length about 1.0 mm; vertex with row of short setae. Antenna bare and long, slightly shorter than head; scape obscure, pedicel nearly square, flagellum long, roughly 7 times as long as pedicel; nearly spine­like, tapering toward tip (but segmentation obscure in the specimen) (Fig. 3). Proboscis long and thick, subequal to head height; palpus partially preserved.
Thorax black. Only one acrostichal seta on mesonotum preserved. Most legs visible with pubescence. Hind tibia with 1 spur, spur of mid tibiae not preserved; first tarsomere of mid and hind legs distinctly longer than following tarsomeres. Hyaline wing: Pterostigma present. C vein with short setulae. Sc ending at middle of wing. Crossvein h located at middle of cell c and slightly distal of the origin of Rs. Vein R2+3 long, straight apically; vein R5 ending slightly beyond wing tip. Rs nearly as long as trunk of R4+R5. Relative lengths of R5 and trunk of R4+R5 about 2: 1. Veins M1 and M2 convergent basally at cell d; vein CuA1 present and arising from cell bm, crossvein m­cu short. CuA2 longer than 1/2 of cell bm. Mouths of cell sc, cell r1 and cell r2+3 subequal in width; mouth of cell r4 much narrower than that of cell r2+3. Cell r4 longer than cell m1. Cell br (= basal radial) longer than cell bm. Cell d slender, crossvein r­m located nearly at middle of trunk of R4 + R5. Five posterior cells present, all of them open wide. Cell cup closed with a short petiole apically. Anal lobe narrow.
Abdomen long, covered with setulae; narrowing toward tip, with 9 visible segments (segment IX obscure); segment II widest, but boundary of segments I and II obscure in the specimen. Cerci two­segmented (Fig. 4).
Holotype. One almost complete well­preserved body with wings, female, No. CNU­ B­NN2005001 housed in Key Lab of Insect Evolution & Environment Change, Capital Normal University, Beijing, China.
Locality and horizon. Daohugou Village, Shantou township, Ningcheng county, Inner Mongolia, China; Jiulongshan Formation, Middle Jurassic (Aalenian­Bajocian).
Etymology. The species is named after the type locality: Daohugou village (China).
FIGURES 3–4. Sinorhagio daohugouensis sp. nov. (female). 3. Antenna (excluding scape); 4. apex of abdomen. C1 and C2, segments 1–2 of cercus.
description: Published as part of Zhang, Kuiyan, Yang, Ding & Ren, Dong, 2006, The first snipe fly (Diptera: Rhagionidae) from the Middle Jurassic of Inner Mongolia, China, pp. 51-57 in Zootaxa 1134 on pages 55-56, DOI: 10.5281/zenodo.171918
Leptotrombidium (Leptotrombidium) spilletti Mitchell and Nadchatram 1966
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Leptotrombidium
Leptotrombidium spilletti

description: Leptotrombidium (Leptotrombidium) spilletti Mitchell and Nadchatram, 1966:
ORI
Leptotrombidium spilletti, Mitchell et al. 1966; Stekolnikov 2013 [multisetosum group]
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 141, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Additional file 2: of Lessons learned from additional research analyses of unsolved clinical exome cases
Creators: name: Eldomery, Mohammad
name: Coban-Akdemir, Zeynep
name: Harel, Tamar
name: Rosenfeld, Jill
name: Gambin, Tomasz
name: AsbjĂ¸Rg Stray-Pedersen
name: SĂŠbastien KĂźry
name: Mercier, Sandra
name: Lessel, Davor
name: Denecke, Jonas
name: Wiszniewski, Wojciech
name: Penney, Samantha
name: Pengfei Liu
name: Weimin Bi
name: Lalani, Seema
name: Schaaf, Christian
name: Wangler, Michael
name: Bacino, Carlos
name: Lewis, Richard
name: Potocki, Lorraine
name: Graham, Brett
name: Belmont, John
name: Scaglia, Fernando
name: Orange, Jordan
name: Jhangiani, Shalini
name: Chiang, Theodore
name: Harsha Doddapaneni
name: Jianhong Hu
name: Muzny, Donna
name: Xia, Fan
name: Beaudet, Arthur
name: Boerwinkle, Eric
name: Eng, Christine
name: Plon, Sharon
name: V. Sutton
name: Gibbs, Richard
name: Posey, Jennifer
name: Yaping Yang
name: Lupski, James
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Figures S1, S2, S3, and S4. Computational de novo variant detection from WES data, interactome analysis of USP19, AOH maps for probands with ABCA4 and FBXL4 variants and clinical whole exome management. (PDF 3462 kb)
title: Revegetation Strategies for Native Wetland Plant Restoration in the Face of Phragmites australis Reinvasion and Hydrologic Extremes
Creators: name: Houde, Maddie
Publisher: name: Utah State University
Year: 2024

description: Reestablishing native plant communities in degraded habitats through seeding or planting ("revegetation") is a necessary step to restore ecosystems and their functions (e.g., supporting biodiversity, nutrient cycling, etc.). Globally, wetlands have suffered high rates of degradation and also experience numerous invasions. Invasive species are those that cause environmental, economic, or societal harm. Phragmites australis is a widespread invasive species that outcompetes native plants and reduces habitat diversity. Reestablishing native plant communities can limit P. australis invasion, yet effective methods to do so remain somewhat untested in wetlands. Additionally, stressful environmental conditions can increase plant mortality in revegetation efforts. In semi-arid wetlands, hydrology and salinity are two key environmental stressors that affect plant survival. However, their combined impacts on native and invasive plants are unclear. In field and controlled-setting (e.g., greenhouse) experiments, we tested the effectiveness of varied revegetation approaches in the context of P. australis reinvasion and environmental stressors to inform wetland restoration in the Great Salt Lake (GSL) Watershed. In GSL wetlands, we introduced two native mixes with distinct growth habits (grass-like vs. broad-leaved), varied the method of introduction (seed vs. seedling), and varied the order of seed and seedling introduction. However, treatments had no effect on total native or invasive cover due to extreme drought followed by prolonged flooding. As environmental conditions shifted from drought to flooding, there were community shifts from drought-tolerant to flood-tolerant species, highlighting the importance of including native species with differing environmental tolerances in revegetation mixes. In a 6-week greenhouse and 7-week mesocosm experiment, we tested the effects of seed mix, water level, salinity, and P. australis presence on plant community outcomes. We found that forbs (i.e., broad-leaved species) were generally resistant to P. australis presence and reduced invasion. Additionally, mixes created with diverging species' environmental tolerances were negatively affected by stressful environmental conditions but still limited P. australis growth in all conditions. Overall, our findings support designing revegetation mixes with diverging environmental tolerances to withstand broad environmental conditions and incorporating high-performing forbs to maximize invasion resistance. However, additional strategies will still be necessary to achieve restoration goals due to increasing environmental extremes.
Satureja L. FROM
Creators: name: Bordbar, Firouzeh
name: Mirtadzadini, Mansour
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Lamiales
Lamiaceae
Satureja

description: KEY TO THE SPECIES OF SATUREJA L. FROM FLORA OF IRAN
7. Lower leaves often broad, calyx teeth straight ...................................................................... S. edmondii Briq.
— Lower leaves not broad, calyx teeth recurved .............................................................. S. macrantha C.A.Mey.
description: Published as part of Bordbar, Firouzeh & Mirtadzadini, Mansour, 2024, Reassessment of Satureja edmondii Briq., a replacement name for S. longiflora Boiss. & Hausskn. (Lamiaceae, Nepetoideae, Mentheae), pp. 129-131 in Adansonia (3) (3) 46 (12) on page 130, DOI: 10.5252/adansonia2024v46a12, http://zenodo.org/record/12780229
Leptotrombidium (Leptotrombidium) subangulare , Stekolnikov 2013
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Leptotrombidium
Leptotrombidium subangulare

description: Leptotrombidium (Leptotrombidium) subangulare (Wen and Xiang, 1984m):
PAL
Leptotrombidium (Leptotrombidium) deliense subangulare Wen and Xiang, 1984 m
Leptotrombidium subangulare, Stekolnikov 2013 [5 group], 2021
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 141, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Additional file 4: Figure S3. of Leveraging blood serotonin as an endophenotype to identify de novo and rare variants involved in autism
Creators: name: Chen, Rui
name: Davis, Lea
name: Guter, Stephen
name: Wei, Qiang
name: Jacob, Suma
name: Potter, Melissa
name: Cox, Nancy
name: Cook, Edwin
name: Sutcliffe, James
name: Bingshan Li
Publisher: name: Figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology
subject: Computational Biology

description: Gene length distribution of functional/disease gene sets used in GSEA. Most of gene sets have higher median gene length than the set of all genes (background distribution). The red line indicates the median length of all genes in the genome. (PDF 80 kb)
Additional file 4: Figure S3. of Leveraging blood serotonin as an endophenotype to identify de novo and rare variants involved in autism
Creators: name: Chen, Rui
name: Davis, Lea
name: Guter, Stephen
name: Wei, Qiang
name: Jacob, Suma
name: Potter, Melissa
name: Cox, Nancy
name: Cook, Edwin
name: Sutcliffe, James
name: Bingshan Li
Publisher: name: Figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Gene length distribution of functional/disease gene sets used in GSEA. Most of gene sets have higher median gene length than the set of all genes (background distribution). The red line indicates the median length of all genes in the genome. (PDF 80 kb)
Leptotrombidium (Leptotrombidium) subangi Vercammen-Grandjean and Langston 1976
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Leptotrombidium
Leptotrombidium subangi

description: Leptotrombidium (Leptotrombidium) subangi Vercammen-Grandjean and Langston, 1976:
ORI
Leptotrombidium (Leptotrombidium) deliense subangi Vercammen-Grandjean and Langston, 1976
Leptotrombidium subangi, Stekolnikov 2013 [deliense group], 2021
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 141, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
The Potential of Nanoparticle-Mediated Macrophage Polarization for Solid Tumor Therapy: Evidence Synthesis and Temporal Monitoring
Creators: name: Bilynsky, Colette
Publisher: name: Carnegie Mellon University
Year: 2024
Subjects: Biomedical Engineering not elsewhere classified

description: Cancer persists as a significant public health challenge despite treatment advances.  Colorectal cancer is especially a concern because its incidence and mortality are increasing in  young individuals. Solid tumors, such as colorectal cancer, are challenging to treat with  immunotherapies due to their immunosuppressive microenvironment preventing T cell infiltration.  Tumor-associated macrophages (TAMs) play a pivotal role in supporting this immunosuppression  by adopting an anti-inflammatory and pro-tumoral phenotype within the tumor microenvironment.  Leveraging nanoparticles to repolarize TAMs towards a proinflammatory and tumoricidal  phenotype holds promise for solid tumor therapy. However, clinical translation of cancer nanomedicines has been slow. This dissertation aims to address this through quantitative review  of the intersection between the colorectal cancer nanomedicine and macrophage polarization,  and by proposing a novel method of temporally tracking macrophage polarization using  bioluminescent reporter cells.  
Using eLDA topic modeling, the dissertation identifies six major topics in the intersection  of cancer medicine and macrophage polarization, providing insights into nanoparticle design  choices and therapeutic strategies across various cancer types. A scoping review and meta analysis of colorectal cancer nanomedicine over two decades reveal evolving nanoparticle design  strategies and their impact on macrophage polarization. We also demonstrate how a  nanoparticle’s ability to increase macrophages’ ratio of M1 to M2 polarization is correlated with  their efficacy at reducing tumor growth and increasing survival. This dissertation also includes a  technology assessment of how evidence synthesis of preclinical studies informs open science  policy.   
To better temporally track macrophage polarization, the dissertation introduces a method  utilizing THP-1 reporter cells with bioluminescently labeled polarization-relevant transcription  factors. We demonstrated how these reporter cells enable time-resolved activation curves for  tumor-associated macrophages, revealing unique NFκB activation profiles dependent on cancer  type that we linked to the tumor microenvironments immunogenicity. Furthermore, monitoring  monocyte to macrophage differentiation with this method highlights the importance of selecting appropriate differentiation protocols for the intended use. These examples demonstrate the  potential use of this bioluminescent platform to monitor macrophage polarization in response to  immunomodulatory treatments, like macrophage-targeted cancer nanomedicine.
title: Evaluating Aspen Seedling Outplanting Success Following High Severity Wildfire in the Southwest
Creators: name: Kapel, Sarah M.
Publisher: name: Utah State University
Year: 2024

description: Quaking aspen (Populus tremuloides Michx.) is an ecologically important forest species in the western U.S. Aspen forests host a variety of understory species, are critical wildlife habitat, and are considered a "natural fuel break" since they are less likely to support crown fires than conifers. Because of climate change and altered disturbance regimes, populations are declining, and innovative strategies are needed to restore aspen. Planting aspen seedlings is a solution, though not a common practice in the West and has been met with high mortality in past experiments. For aspen planting to be more broadly implemented, managers need guidance to increase probability of seedling success. We developed a planting experiment to determine whether specific types of planting sites and conditions in the field could increase the survival and growth of nursery-grown aspen seedlings. The increasing occurrence and severity of wildfire presented an opportunity to plant seedlings in high severity fire footprints. Aspen trees thrive in severely burned landscapes, where conifer regeneration may be limited. We planted 1,140 seedlings, using remnant standing dead trees, snags, and downed logs as nurse structure treatments. We also tested individual tree shelters on half of the seedlings to determine if this is an effective tool to prevent herbivory. After one growing season we assessed seedling survival, causes of mortality, growth, and local competition. In a separate field experiment we also installed soil moisture-sensing probes to monitor soil moisture content at each type of planting site (snag, log, open). My results show high survival overall compared to past experiments, notably in seedlings next to snags. This could be because soil moisture content was high near snags during dry periods. Tree shelters increased the probability of seedling survival but had mixed effects on growth within the one season. The results from this research will contribute to the development of best practices in future aspen seedling restoration projects and suggest a need for snag retention on the landscape after fire.
Additional file 3: Figure S2. of Leveraging blood serotonin as an endophenotype to identify de novo and rare variants involved in autism
Creators: name: Chen, Rui
name: Davis, Lea
name: Guter, Stephen
name: Wei, Qiang
name: Jacob, Suma
name: Potter, Melissa
name: Cox, Nancy
name: Cook, Edwin
name: Sutcliffe, James
name: Bingshan Li
Publisher: name: Figshare
Year: 2017
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: The result of PCA indicates the threshold to identify the individuals with European ancestry. Left panel: PC plot of CEU, CHB, YRI from the 1000 Genome Project. Right panel: PC plot of our data. (PDF 8 kb)