cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Supplementary Material for Akhund-Zade, et al., 2021
Creators: name: Jamilla Akhund-Zade
name: Lall, Shraddha
name: Gajda, Erika
name: Yoon, Denise
name: Ayroles, Julien F.
name: De Bivort, Benjamin L.
Publisher: name: GSA Journals
Year: 2021
Subjects: subject: 60412 Quantitative Genetics (incl. Disease and Trait Mapping Genetics)
subject: FOS: Biological sciences
subject: 60411 Population, Ecological and Evolutionary Genetics

description: Supplemental tables and discussion associated with the manuscript, "Genetic basis of offspring number-body weight tradeoff in Drosophila melanogaster". Offspring index GWAS QQ plots and LD matrix are reported in Figure S1; heritability estimates for measured phenotypes in Table S1; GWAS results for all four measured phenotypes in Table S2; PCA variance proportion explained and loadings in Table S3; correlation in gene expression among top hits and between gene expression and phenotype in File S1.
Finite temperature phase transition in full QCD with $N_f=2$ flavors of clover fermions at $N_t=8$ and 10
Creators: name: Nakamura, Y.
name: Bornyakov, V.
name: Chernodub, M. N.
name: Koma, Y.
name: Mori, Y.
name: Polikarpov, M. I.
name: Schierholz, G.
name: Slavnov, A.
name: Stuben, H.
name: Suzuki, T.
name: Uvarov, P.
name: Veselov, A. I.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: We present results for QCD with $N_f=2$ flavors of dynamical quarks using nonperturbatively improved Wilson fermions at finite temperature on $16^3 \times 8$ and $24^3 \times 10$ lattices. We determine the transition temperature in the range of quark masses $0.6 \lesssim m_π/m_ρ\leq 0.8$. After fixing the Maximal Abelian gauge we investigate the contribution of Abelian monopoles to the Polyakov loop, Polyakov loop susceptibility and confirm Abelian and monopole dominance in full QCD.
description: Lattice2003(topology), 3 pages, 6 figures
Orchesella flavescens
Creators: name: Thibaud, Jean-Marc
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Orchesellidae
Orchesella
Orchesella flavescens

description: Orchesella flavescens (Bourlet, 1839)
Heterotoma flavescens Bourlet, 1839: 395.
Podura rufescens Wulfen, 1788: 83.
Degeeria variegata Guerin & Percheron, 1836: 6.
Aetheocerus rubro-fasciatus Bourlet, 1843: 111-112.
Aetheocerus dimidiatus Bourlet, 1843: 111-112.
Orchesella rufescens – Lucas 1844: 288.
Orchesella flavescens – Nicolet 1847: 365.
DISTRIBUTION. — France. Bourlet 1839 (P. rufescens). — Bourlet 1841, 1843 (A. rubro-fasciatus et Ae. dimidiatus). — Gervais 1844 (D. variegata et H. flavescens). — Bourlet 1845 (O. melanocephala). — Nicolet 1847.
Ardennes, Côtes dijonaise et chalonaise, Auxoiset Morvan. Denis 1921.
Bas-Rhin. Merkwiller-Pechelbronn (Gillet & Ponge 2005).
Eure. Lyons-la-Forêt (Carl 1899).
Haute-Garonne. Fenouillet (Cassagnau & Delamare Deboutteville 1951, Orufescens). Plainedela Garonne (Cassagnau 1961).
Île-de-France. Environsde Paris (Finot 1890, D. variagata et O. rufescens).
Vosges. Géradmer (Carl 1899).
ÉCOLOGIE. — Gillet & Ponge 2005 (pollution).
description: Published as part of Thibaud, Jean-Marc, 2017, Catalogue des collemboles de France, pp. 297-436 in Zoosystema 39 (3) on pages 385-386, DOI: 10.5252/z2017n3a1, http://zenodo.org/record/5496272
Cheumatopsyche caprotina Malicky 1997
Creators: name: Oláh, János
name: Johanson, Kjell Arne
name: Barnard, Peter C.
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Trichoptera
Hydropsychidae
Cheumatopsyche
Cheumatopsyche caprotina

description: Cheumatopsyche caprotina Malicky, 1997
 Cheumatopsyche caprotina Malicky, 1997: 1023.
 Type locality: Indonesia (Sulawesi).
description: Published as part of Oláh, János, Johanson, Kjell Arne & Barnard, Peter C., 2008, Revision of the Oriental and Afrotropical species of Cheumatopsyche Wallengren (Hydropsychidae, Trichoptera), pp. 1-171 in Zootaxa 1738 on page 82
Scaling of magnetic reconnection with a limited x-line extent
Creators: name: Huang, Kai
name: Liu, Yi-Hsin
name: Lu, Quanming
name: Hesse, Michael
Publisher: name: arXiv
Year: 2019
Subjects: subject: Space Physics (physics.space-ph)
subject: Geophysics (physics.geo-ph)
subject: FOS: Physical sciences

description: Contrary to all the 2D models, where the reconnection x-line extent is infinitely long, we study magnetic reconnection in the opposite limit. The scaling of the average reconnection rate and outflow speed are modeled as a function of the x-line extent. An internal x-line asymmetry along the current direction develops because of the flux transport by electrons beneath the ion kinetic scale, and it plays an important role in suppressing reconnection in the short x-line limit; the average reconnection rate drops because of the limited active region, and the outflow speed reduction is associated with the reduction of the $J \times B$ force, that is caused by the phase shift between the J and B profiles, also as a consequence of this flux transport.
description: 5 pages, 5 figures
Remarks on Product VMO
Creators: name: Lacey, Michael T
name: Terwilleger, Erin
name: Wick, Brett
Publisher: name: arXiv
Year: 2004
Subjects: subject: Classical Analysis and ODEs (math.CA)
subject: Operator Algebras (math.OA)
subject: FOS: Mathematics

description: Well known results related to the compactness of Hankel operators of one complex variable are extended to little Hankel operators of two complex variables. Critical to these considerations is the result of Ferguson and Lacey characterizing the boundedness of the little Hankel operators in terms of the product BMO of S.-Y. Chang and R. Fefferman.
description: 11 pages
Trigonometric Degeneration and Orbifold Wess-Zumino-Witten Model. I
Creators: name: Takebe, Takashi
Publisher: name: arXiv
Year: 2003
Subjects: subject: Quantum Algebra (math.QA)
subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: FOS: Mathematics
subject: FOS: Physical sciences
subject: 81T40

description: Trigonometric degeneration of the Baxter-Belavin elliptic r matrix is described by the degeneration of the twisted WZW model on elliptic curves. The spaces of conformal blocks and conformal coinvariants of the degenerate model are factorised into those of the orbifold WZW model.
description: 24 pages, 1 figure, contribution to ``Conformal Field Theory and Integrable Models'', Chernogolovka, Moscow Region, Russia, on September 15--21, 2002; typos corrected, references added (v2); typos corrected, final version (v3)
Additional file 2 of The round goby genome provides insights into mechanisms that may facilitate biological invasions
Creators: name: Adrian-Kalchhauser, Irene
name: Blomberg, Anders
name: Larsson, Tomas
name: Musilova, Zuzana
name: Peart, Claire
name: Pippel, Martin
name: Solbakken, Monica
name: Suurväli, Jaanus
name: Walser, Jean-Claude
name: Wilson, Joanna
name: Rosenblad, Magnus Alm
name: Demian Burguera
name: Gutnik, Silvia
name: Michiels, Nico
name: Töpel, Mats
name: Pankov, Kirill
name: Schloissnig, Siegfried
name: Winkler, Sylke
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Evolutionary Biology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Plant Biology

description: Figure S1. Phylogenetic tree of opsins, with the branches that are depicted collapsed in Fig. 2 expanded.
Cassiopeia A and its Clumpy Presupernova Wind
Creators: name: Chevalier, Roger A.
name: Oishi, Jeffrey
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The observed shock wave positions and expansion in Cas A can be interpreted in a model of supernova interaction with a freely expanding stellar wind with a mass loss rate of ~3e-5 Msun/yr for a wind velocity of 10 km/s. The wind was probably still being lost at the time of the supernova, which may have been of Type IIn or IIb. The wind may play a role in the formation of very fast knots observed in Cas A. In this model, the quasi-stationary flocculi (QSFs) represent clumps in the wind, with a density contrast of several 1000 compared to the smooth wind. The outer, unshocked clumpy wind is photoionized by radiation from the supernova, and is observed as a patchy HII region around Cas A. This gas has a lower density than the QSFs and is heated by nonradiative shocks driven by the blast wave. Denser clumps have recombined and are observed as HI compact absorption features towards Cas A.
description: 13 pages, ApJL, in press
Cheumatopsyche georgulmeri Mey 1998
Creators: name: Oláh, János
name: Johanson, Kjell Arne
name: Barnard, Peter C.
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Trichoptera
Hydropsychidae
Cheumatopsyche
Cheumatopsyche georgulmeri

description: Cheumatopsyche georgulmeri Mey, 1998
 Cheumatopsyche georgulmeri Mey, 1998a: 8.
 Type locality: Philippines.
description: Published as part of Oláh, János, Johanson, Kjell Arne & Barnard, Peter C., 2008, Revision of the Oriental and Afrotropical species of Cheumatopsyche Wallengren (Hydropsychidae, Trichoptera), pp. 1-171 in Zootaxa 1738 on page 83
Inspiratory Muscle Training Potentiates the Beneficial Effects of Proportional Assisted Ventilation on Exertional Dyspnea and Exercise Tolerance in COPD: A Proof-of-Concept Randomized and Controlled Trial
Creators: name: Koch, Rodrigo
name: De Lemos Augusto, Tiago Rodrigues
name: Ramos, Alessandro Gomes
name: De Tarso Müller, Paulo
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: During pulmonary rehabilitation, a subset of subjects with COPD requires adjunct therapy to achieve high-intensity training. Both noninvasive ventilation (NIV) and inspiratory muscle training (IMT) are available to assist these subjects. We aimed to prime the respiratory muscles before NIV with IMT, anticipating additive effects for maximal exercise tolerance (Tlim) and dyspnea/leg fatigue relief throughout the exercise as primary outcomes. Changes in the respiratory pattern were secondary outcomes. COPD subjects performed a total of four identical constant work rate tests on a cycle ergometer at 75% of maximum work rate, under control ventilation (SHAM, 4 cm H2O) or proportional assisted ventilation (PAV, individually adjusted), before and after 10 sessions of high-intensity IMT (three times/week) during 30 days. Two-way RM ANOVA with appropriate corrections were performed. Final analysis in nine subjects showed improved Tlim (Δ = 111 s) and lower minute-ventilation (Δ = 4 L.min−1) at exhaustion, when comparing the IMT effects within the PAV modality (p = 0.001 and p = 0.036, respectively) and improved Tlim for PAV vs. SHAM (PAV main-effect, p = 0.001; IMT main-effect, p = 0.006; PAV vs. IMT interaction, p = 0.034). In addition, IMT + PAV association, compared to PAV alone, resulted in lower respiratory frequency (IMT main-effect, p = 0.009; time main-effect, p vs. time interaction, p = 0.242) and lower inspiratory time related to duty cycle (IMT main-effect, p = 0.018; time main-effect, p = 0.0001; IMT vs. time interaction, p = 0.004) throughout exercise. The addition of IMT prior to a PAV-supported aerobic bout potentiates exercise tolerance and dyspnea relief and induces favourable changes in ventilatory pattern in severe COPD during high-intensity training (Brazilian Registry of Clinical Trials, number RBR-6n3dzz).
A20 haploinsufficiency disturbs immune homeostasis and drives the transformation of lymphocytes with permissive antigen receptors
Creators: name: Schultheiß, Christoph
name: Paschold, Lisa
name: Mohebiany, Alma Nazlie
name: Escher, Moritz
name: Kattimani, Yogita Mallu
name: Müller, Melanie
name: Schmidt-Barbo, Paul
name: Willschel, Edith
name: Jonas, Hanna
name: Chinchuluun, Namuun
name: Hoffmann, Katrin
Publisher: name: Universitäts- und Landesbibliothek Sachsen-Anhalt
Year: 2024
Subjects: subject: 610

description: Genetic TNFAIP3 (A20) inactivation is a classical somatic lymphoma lesion and the genomic trait in haploinsufficiency of A20 (HA20). In a cohort of 34 patients with HA20, we show that heterozygous TNFAIP3 loss skews immune repertoires toward lymphocytes with classical self-reactive antigen receptors typically found in B and T cell lymphomas. This skewing was mediated by a feed-forward tumor necrosis factor (TNF)/A20/nuclear factor κB (NF-κB) loop that shaped pre-lymphoma transcriptome signatures in clonally expanded B (CD81, BACH2, and NEAT1) or T (GATA3, TOX, and PDCD1) cells. The skewing was reversed by anti-TNF treatment but could also progress to overt lymphoma. Analysis of conditional TNFAIP3 knock-out mice reproduced the wiring of the TNF/A20/NF-κB signaling axis with permissive antigen receptors and suggested a distinct regulation in B and T cells. Together, patients with the genetic disorder HA20 provide an exceptional window into A20/TNF/NF-κB–mediated control of immune homeostasis and early steps of lymphomagenesis that remain clinically unrecognized.
The MASSIVE Survey XIV -- Stellar Velocity Profiles and Kinematic Misalignments from 200 pc to 20 kpc in Massive Early-type Galaxies
Creators: name: Ene, Irina
name: Ma, Chung-Pei
name: Walsh, Jonelle L.
name: Greene, Jenny E.
name: Thomas, Jens
name: Blakeslee, John P.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We use high spatial resolution stellar velocity maps from the Gemini GMOS integral-field spectrograph (IFS) and wide-field velocity maps from the McDonald Mitchell IFS to study the stellar velocity profiles and kinematic misalignments from $\sim 200$ pc to $\sim 20$ kpc in 20 early-type galaxies with stellar mass $M_* > 10^{11.7} M_\odot$ in the MASSIVE survey. While 80% of the galaxies have low spins ($λ< 0.1$) and low rotational velocities ($< 50$ km/s) in both the central region and the main body, we find a diverse range of velocity features and misalignment angles. For the 18 galaxies with measurable central kinematic axes, 10 have well aligned kinematic axis and photometric major axis, and the other 8 galaxies have misalignment angles that are distributed quite evenly from $15^\circ$ to the maximal value of $90^\circ$. There is a strong correlation between central kinematic misalignment and galaxy spin, where all 4 galaxies with significant spins have well aligned kinematic and photometric axes, but only 43% of the low-spin galaxies are well aligned. The central and main-body kinematic axes within a galaxy are not always aligned. When the two kinematic axes are aligned ($\sim 60$% of the cases), they are either also aligned with the photometric major axis or orthogonal to it. We find 13 galaxies to also exhibit noticeable local kinematic twists, and one galaxy to have a counter-rotating core. A diverse assembly history consisting of multiple gas-poor mergers of a variety of progenitor mass ratios and orbits is likely to be needed to account for the predominance of low spins and the wide range of central and main-body velocity features reported here for local massive ETGs.
description: Accepted for publication in The Astrophysical Journal. 15 pages, 7 figures
Elaborating Transition Interface Sampling Methods
Creators: name: van Erp, Titus S.
name: Bolhuis, Peter G.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We review two recently developed efficient methods for calculating rate constants of processes dominated by rare events in high-dimensional complex systems. The first is transition interface sampling (TIS), based on the measurement of effective fluxes through hypersurfaces in phase space. TIS improves efficiency with respect to standard transition path sampling (TPS) rate constant techniques, because it allows a variable path length and is less sensitive to recrossings. The second method is the partial path version of TIS. Developed for diffusive processes, it exploits the loss of long time correlation. We discuss the relation between the new techniques and the standard reactive flux methods in detail. Path sampling algorithms can suffer from ergodicity problems, and we introduce several new techniques to alleviate these problems, notably path swapping, stochastic configurational bias Monte Carlo shooting moves and order-parameter free path sampling. In addition, we give algorithms to calculate other interesting properties from path ensembles besides rate constants, such as activation energies and reaction mechanisms.
description: 36 pages, 5 figures
Topological susceptibility from the overlap
Creators: name: Del Debbio, Luigi
name: Pica, Claudio
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: The chiral symmetry at finite lattice spacing of Ginsparg-Wilson fermionic actions constrains the renormalization of the lattice operators; in particular, the topological susceptibility does not require any renormalization, when using a fermionic estimator to define the topological charge. Therefore, the overlap formalism appears as an appealing candidate to study the continuum limit of the topological susceptibility while keeping the systematic errors under theoretical control. We present results for the SU(3) pure gauge theory using the index of the overlap Dirac operator to study the topology of the gauge configurations. The topological charge is obtained from the zero modes of the overlap and using a new algorithm for the spectral flow analysis. A detailed comparison with cooling techniques is presented. Particular care is taken in assessing the systematic errors. Relatively high statistics (500 to 1000 independent configurations) yield an extrapolated continuum limit with errors that are comparable with other methods. Our current value from the overlap is $χ^{1/4} = 188 \pm 12 \pm 5 \MeV$.
description: 18 pages, 7 figures
Cheumatopsyche guadunica Li & Dudgeon 1988
Creators: name: Oláh, János
name: Johanson, Kjell Arne
name: Barnard, Peter C.
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Trichoptera
Hydropsychidae
Cheumatopsyche
Cheumatopsyche guadunica

description: Cheumatopsyche guadunica Li & Dudgeon, 1988
 Cheumatopsyche guadunica Li & Dudgeon, 1988: 43.
 Type locality: China (Fujian).
description: Published as part of Oláh, János, Johanson, Kjell Arne & Barnard, Peter C., 2008, Revision of the Oriental and Afrotropical species of Cheumatopsyche Wallengren (Hydropsychidae, Trichoptera), pp. 1-171 in Zootaxa 1738 on page 83
Orbites coadjointes et variétés caractéristiques
Creators: name: Baklouti, Ali
name: Dhieb, Sami
name: Manchon, Dominique
Publisher: name: arXiv
Year: 2003
Subjects: subject: Representation Theory (math.RT)
subject: Quantum Algebra (math.QA)
subject: FOS: Mathematics
subject: 16S30; 16S80; 16G30; 22E30

description: The purpose of the present work is to describe a dequantization procedure for topological modules over a deformed algebra. We define the characteristic variety of a topological module as the common zeroes of the annihilator of the representation obtained by setting the deformation parameter to zero. On the other hand, the Poisson characteristic variety is defined as the common zeroes of the ideal obtained by considering the annihilator of the deformed representation, and only then setting the deformation parameter to zero. Using Gabber's theorem, we show the involutivity of the characteristic variety. The Poisson characteristic variety is indeed a Poisson subvariety of the underlying Poisson manifold. We compute explicitly the characteristic variety in several examples in the Poisson-linear case, including the dual of any exponential solvable Lie algebra. In the nilpotent case, we show that any coadjoint orbit appears as the Poisson characteristic variety of a well chosen topological module.
description: Important corrections and improvements. In French, plain TeX, 41 pages. Submitted
Morphological signatures induced by dust back reaction in discs with an embedded planet
Creators: name: Yang, Chao-Chin
name: Zhu, Zhaohuan
Publisher: name: arXiv
Year: 2019
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: Recent observations have revealed a gallery of substructures in the dust component of nearby protoplanetary discs, including rings, gaps, spiral arms, and lopsided concentrations. One interpretation of these substructures is the existence of embedded planets. Not until recently, however, most of the modelling effort to interpret these observations ignored the dust back reaction to the gas. In this work, we conduct local-shearing-sheet simulations for an isothermal, inviscid, non-self-gravitating, razor-thin dusty disc with a planet on a fixed circular orbit. We systematically examine the parameter space spanned by planet mass ($0.1M_\text{th} \le M_\text{p} \le 1M_\text{th}$, where $M_\text{th}$ is the thermal mass), dimensionless stopping time ($10^{-3} \le τ_\text{s} \le 1$), and solid abundance ($0 < Z \le 1$). We find that when the dust particles are tightly coupled to the gas ($τ_\text{s} < 0.1$), the spiral arms are less open and the gap driven by the planet becomes deeper with increasing $Z$, consistent with a reduced speed of sound in the approximation of a single dust-gas mixture. By contrast, when the dust particles are marginally coupled ($0.1 \lesssim τ_\text{s} \lesssim 1$), the spiral structure is insensitive to $Z$ and the gap structure in the gas can become significantly skewed and unidentifiable. When the latter occurs, the pressure maximum radially outside of the planet is weakened or even extinguished, and hence dust filtration by a low-mass ($M_\text{p} < M_\text{th}$) planet could be reduced or eliminated. Finally, we find that the gap edges where the dust particles are accumulated as well as the lopsided large-scale vortices driven by a massive planet, if any, are unstable, and they are broken into numerous small-scale dust-gas vortices.
description: Accepted by MNRAS. 18 pages, 11 figures
Daily Impact of COPD in Younger and Older Adults: Global Online Survey Results from over 1,300 Patients
Creators: name: P. N. Richard Dekhuijzen
name: Hass, Nicole
name: Jinming Liu
name: Dreher, Michael
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: The daily impact of chronic obstructive pulmonary disease (COPD) on younger patients is often underappreciated. To assess this, we investigated the disease burden experienced by younger and older patients. A panel of questions was developed in conjunction with the European Federation of Allergy and Airways Diseases Patients’ Associations and Boehringer Ingelheim. The online survey was conducted by Instar Research. Data were collected from eight countries in Europe, plus China, Japan and the United States. All patients were receiving COPD maintenance therapy. Patients were stratified by age (45–54, 55–64, ≥65 years). Data were analyzed from 1,375 patients from Europe (925), China (150), Japan (100) and the US (200); 365 were aged 45–54, 440 aged 55–64, and 570 aged ≥65 years. Mean age was 61.8 years; 771 (56%) were male. A significantly higher proportion of patients aged 45–54 years reported “poor” or “very poor” wellbeing (35% vs. 28%; p p p
Orchesella frontimaculata Gisin 1946
Creators: name: Thibaud, Jean-Marc
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Orchesellidae
Orchesella
Orchesella frontimaculata

description: Orchesella frontimaculata Gisin, 1946
Orchesella frontimaculata Gisin, 1946: 220.
DISTRIBUTION. — Suisse. Gisin 1946.
Haute-Savoie. Près du Col d’Anterne, 2000 m, bord lac Pormenaz (Gisin 1946).
description: Published as part of Thibaud, Jean-Marc, 2017, Catalogue des collemboles de France, pp. 297-436 in Zoosystema 39 (3) on page 386, DOI: 10.5252/z2017n3a1, http://zenodo.org/record/5496272
HST/NICMOS Observations of the Embedded Cluster in NGC 2024: Constraints on the IMF and Binary Fraction
Creators: name: Liu, Wilson M.
name: Meyer, Michael R.
name: Cotera, Angela S.
name: Young, Erick T.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present an analysis of NICMOS observations of the embedded cluster associated with NGC 2024. An analysis of the cluster color-magnitude diagram (CMD) using the models of D'Antona & Mazzitelli (1997) and Baraffe et al. (1998) indicates that the ratio of intermediate mass (1.0 to 10.0 M_sun) to low mass (0.1 to 1.0 M_sun) stars is consistent with the stellar initial mass function (IMF) for the field. In addition to the CMD analysis, we present results on the multiplicity of stars in the region. Three companions (in a sample of 95 potential primaries) were found, with angular separations between 0".4 and 1".0, translating to a projected linear separation of 184 AU to 460 AU for an estimated distance of 460 pc. The completeness of binary detections is assessed using recovery fractions calculated by a series of tests using artificially generated companions to potential primaries in the data frames. We find that the binary fraction in NGC 2024 is consistent with that of Duquennoy & Mayor (1991) for solar neighborhood stars over the range of separations and companion masses appropriate for our survey.
description: 24 pages, 6 figures, accepted to the Astronomical Journal
Area Regge Calculus and Discontinuous Metrics
Creators: name: Wainwright, Chris
name: Williams, Ruth M.
Publisher: name: arXiv
Year: 2004
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Taking the triangle areas as independent variables in the theory of Regge calculus can lead to ambiguities in the edge lengths, which can be interpreted as discontinuities in the metric. We construct solutions to area Regge calculus using a triangulated lattice and find that on a spacelike hypersurface no such discontinuity can arise. On a null hypersurface however, we can have such a situation and the resulting metric can be interpreted as a so-called refractive wave.
description: 18 pages, 1 figure
QCD at zero baryon density
Creators: name: Kratochvila, Slavo
name: de Forcrand, Philippe
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: While the grand canonical partition function Z_{GC}(mu) with chemical potential mu explicitly breaks the Z_3 symmetry with the Dirac determinant, the canonical partition function at fixed baryon number Z_C(B) is manifestly Z_3-symmetric. We compare Z_{GC}(mu=0) and Z_C(B=0) formally and by numerical simulations, in particular with respect to properties of the deconfinement transition. Differences between the two ensembles, for physical observables characterising the phase transition, vanish with increasing lattice size. We show numerically that the free energy density is the same for both ensembles in the thermodynamic limit.
description: Lattice2003(nonzero), 3 pages, 5 figures
O(1) contribution of saddle point fluctuations to the free energy of Bethe Ansatz systems
Creators: name: Woynarovich, F.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We develop a method to calculate the contribution of the saddle-point fluctuations to the partition function of systems soluble by the Bethe Ansatz. Using this method we give the O(1) corrections to the free energy of the 1D repulsive delta Bose gas both for periodic boundary conditions and for the open end case. We also generalize our method to more complicated systems and discuss the case of XXZ Heisenberg chain in more details.
description: 33 pages
On non-linear hydrodynamic instability and enhanced transport in differentially rotating flows
Creators: name: Richard, D. T.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: In this paper we argue that differential rotation can possibly sustain hydrodynamic turbulence in the absence of magnetic field. We explain why the non-linearities of the hydrodynamic equations (i.e. turbulent diffusion) should not be neglected, either as a simplifying approximation or based on boundary counditions. The consequences of lifting this hypothesis are studied for the flow stability and the enhanced turbulent transport. We develop a simple general model for the energetics of turbulent fluctuations in differentially rotating flows. By taking into account the non-linearities of the equations of motions, we give constraints on the mean flow properties for the possible development of shear instability. The results from recent laboratory experiments on rotating flows show -- in agreement with the model -- that the pertinent parameter for stability appears to be the Rossby number Ro. The laboratory experiments seem to be compatible with Ro 1 in the inviscid or high rotation rates limit. Our results, taken in the inviscid limit, are coherent with the classical linear stability analysis, in the sense that the critical perturbation equals zero on the marginal linear stability curve. We also propose a prescription for turbulent viscosity which generalize the beta-prescription derived in Richard & Zahn 1999.
description: Accepted for publication in "Astronomy and Astrophysics"
Fractional Exhaled Nitric Oxide as an Inflammatory Biomarker in Chronic Obstructive Pulmonary Disease (COPD) with or without Concurrent Diagnosis of Asthma: The Canadian Cohort Obstructive Lung Disease (CanCOLD)
Creators: name: Seyed-Mohammad-Yousof Mostafavi-Pour-Manshadi
name: Nafiseh Naderi
name: Palmina Mancino
name: Li, Pei Zhi
name: Tan, Wan
name: Bourbeau, Jean
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology
subject: 110309 Infectious Diseases

description: We studied whether fractional exhaled nitric oxide (FENO) can differentiate chronic obstructive pulmonary disease (COPD) with concurrent diagnosis of asthma from COPD-only as well as its ability to predict disease severity and progression. This study was embedded in the Canadian Cohort Obstructive Lung Disease (CanCOLD). Subjects of ≥40 years old completed FENO measurements were subdivided into four groups, including COPD (N = 86 [COPD-only (N = 35) and COPD with concurrent diagnosis of asthma (N = 51)], healthy (N = 72), and at risk (N = 151). Three of the most common clinical definitions were used for characterizing COPD with concurrent diagnosis of asthma: 1) atopy and self-reported physician diagnosis of asthma, 2) ≥12% and ≥200 ml post-bronchodilator FEV1; 3) self-reported physician diagnosis of asthma. FENO values were classified using quartiles and the American Thoracic Society (ATS) guideline 2011. Compared to COPD-only, more COPD with concurrent diagnosis of asthma had a significant FENO50 level of ≥ 33.5 ppb (fourth quartile) than COPD-only (p = 0.045, 0.011, and 0.006, for definition 1, 2, and 3, respectively). Considering the ATS guideline 2011, fewer COPD with concurrent diagnosis of asthma had FENO50 < 25 than COPD-only, which was statistically significant with definition 1 and 3 (p = 0.038 and 0.026, respectively). FENO as a biomarker has the potential to be used as a complementary value for differentiating COPD with concurrent diagnosis of asthma from COPD-only. Further studies should be conducted on validated definitions of COPD with concurrent diagnosis of asthma, which may include a reference to the type of airway inflammation in addition to the clinical definition.
Exploring Isomerization Dynamics on a Potential Energy Surface with an Index-2 Saddle using Lagrangian Descriptors
Creators: name: García-Garrido, Víctor J.
name: Agaoglou, Makrina
name: Wiggins, Stephen
Publisher: name: arXiv
Year: 2020
Subjects: subject: Chaotic Dynamics (nlin.CD)
subject: Dynamical Systems (math.DS)
subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: In this paper we explore the phase space structures governing isomerization dynamics on a potential energy surface with four wells and an index-2 saddle. For this model, we analyze the influence that coupling both degrees of freedom of the system and breaking the symmetry of the problem have on the geometrical template of phase space structures that characterizes reaction. To achieve this goal we apply the method of Lagrangian descriptors, a technique with the capability of unveiling the key invariant manifolds that determine transport processes in nonlinear dynamical systems. This approach reveals with extraordinary detail the intricate geometry of the isomerization routes interconnecting the different potential wells, and provides us with valuable information to distinguish between initial conditions that undergo sequential and concerted isomerization.
description: 37 pages, 18 Figures (Submitted)
Fermion kinetics in the Falicov-Kimball limit of the three-band Emery model
Creators: name: Sunko, D. K.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: The three-band Emery model is reduced to a single-particle quantum model of Falicov-Kimball type, by allowing only up-spins to hop, and forbidding double occupation by projection. It is used to study the effects of geometric obstruction on mobile fermions in thermodynamic equilibrium. For low hopping overlap, there appears a plateau in the entropy, due to charge correlations, and related to real-space disorder. For large overlap, the equilibrium thermopower susceptibility remains anomalous, with a sign opposite to the one predicted from the single-particle density of states. The heat capacity and non-Fermi liquid response are discussed in the context of similar results in the literature. All results are obtained by evaluation of an effective single-particle free-energy operator in closed form. The method to obtain this operator is described in detail.
description: New calculations, method explained in detail, 16 pages, 9 figures
Additional file 28 of The round goby genome provides insights into mechanisms that may facilitate biological invasions
Creators: name: Adrian-Kalchhauser, Irene
name: Blomberg, Anders
name: Larsson, Tomas
name: Musilova, Zuzana
name: Peart, Claire
name: Pippel, Martin
name: Solbakken, Monica
name: Suurväli, Jaanus
name: Walser, Jean-Claude
name: Wilson, Joanna
name: Rosenblad, Magnus Alm
name: Demian Burguera
name: Gutnik, Silvia
name: Michiels, Nico
name: Töpel, Mats
name: Pankov, Kirill
name: Schloissnig, Siegfried
name: Winkler, Sylke
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Computational Biology

description: Detailed methods for NLR annotation.
Orchesella kervillei Denis 1932
Creators: name: Thibaud, Jean-Marc
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Orchesellidae
Orchesella
Orchesella kervillei

description: Orchesella kervillei Denis, 1932
Orchesella kervillei Denis, 1932: 75.
DISTRIBUTION. — Haute-Garonne. Bois de Sajust, Val d’Esquierry et Val dela Frèche, 1000 à 2000 m, cantonde Bagnères-de-Luchon (Denis 1932).
Hautes-Pyrénées. Orédonet Bareilles (Cassagnau & Delamare Deboutteville 1951). — Valléede Couplan, Orédon, valléed’Aure (Cassagnau 1964a). — Orédon (Cassagnau & Juberthie 1967b).
Hautes-Alpes. Entraigues, massif du Pelvoux (Vaillant 1956).
Pyrénées-Orientales. Réservede La Massaneprèsde Banyuls-sur- Mer (Delamare Deboutteville etal. 1957).
Pyrénées. Cassagnau 1961.
PHYSIOLOGIE. — Cassagnau & Juberthie 1967b (complexe cérébral endocrine).
ÉCOLOGIE. — Vaillant 1956 (faune hygropétrique).
description: Published as part of Thibaud, Jean-Marc, 2017, Catalogue des collemboles de France, pp. 297-436 in Zoosystema 39 (3) on page 386, DOI: 10.5252/z2017n3a1, http://zenodo.org/record/5496272
Orchesella oredonensis Cassagnau 1964
Creators: name: Thibaud, Jean-Marc
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Orchesellidae
Orchesella
Orchesella oredonensis

description: Orchesella oredonensis Cassagnau, 1964 **
Orchesella oredonensi s Cassagnau, 1964a: 479.
DISTRIBUTION. — Hautes-Pyrénées. Orédon (Cassagnau 1964a).
description: Published as part of Thibaud, Jean-Marc, 2017, Catalogue des collemboles de France, pp. 297-436 in Zoosystema 39 (3) on page 386, DOI: 10.5252/z2017n3a1, http://zenodo.org/record/5496272
Hadron formation in electron induced reactions at HERMES energies
Creators: name: Falter, T.
name: Cassing, W.
name: Gallmeister, K.
name: Mosel, U.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Nuclear Theory (nucl-th)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We investigate meson electroproduction off complex nuclei in the kinematic regime of the HERMES experiment using a semi-classical transport model which is based on the Boltzmann-Uehling-Uhlenbeck (BUU) equation. We discuss coherence length and color transparency effects in exclusive rho^0 production as well as hadron formation and attenuation of charged pions, kaons, protons and anti-protons in deep inelastic lepton scattering off nuclei.
description: 5 pages, 2 figures, to be published in the Proceedings of the "10th International Conference on Hadron Spectroscopy", Aschaffenburg, Germany, Aug. 31 - Sep. 6, 2003
Cheumatopsyche transmutata Mey 1998
Creators: name: Oláh, János
name: Johanson, Kjell Arne
name: Barnard, Peter C.
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Trichoptera
Hydropsychidae
Cheumatopsyche
Cheumatopsyche transmutata

description: Cheumatopsyche transmutata Mey, 1998
 Cheumatopsyche transmutata Mey, 1998b: 559.
 Type locality: Philippines.
description: Published as part of Oláh, János, Johanson, Kjell Arne & Barnard, Peter C., 2008, Revision of the Oriental and Afrotropical species of Cheumatopsyche Wallengren (Hydropsychidae, Trichoptera), pp. 1-171 in Zootaxa 1738 on page 84
Singularities of convex hulls of smooth hypersurfaces
Creators: name: Bogaevsky, Ilya A.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Metric Geometry (math.MG)
subject: FOS: Mathematics
subject: 58K40; 52A20

description: We describe singularities of the convex hull of a generic compact smooth hypersurface in four-dimensional affine space up to diffeomorphisms. It turns out there are only two new singularities (in comparison with the previous dimension case) which appear at separate points of the boundary of the convex hull and are not removed by a small perturbation of the original hypersurface. The first singularity does not contain functional, but has at least nine continuous number invariants. A normal form which does not contain invariants at all is found for the second singularity.
description: combined version of the two journal papers indicated below
Hawking Flux from a Black Hole with Nonlinear Supertranslation Hair
Creators: name: Lin, Feng-Li
name: Takeuchi, Shingo
Publisher: name: arXiv
Year: 2020
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We study the Hawking flux from a black hole with soft hair by the anomaly cancellation method proposed by Robinson and Wilczek. Unlike the earlier studies considering the black hole with linear supertranslation hair, our study takes into account the supertranslation hair to the quadratic order, which then yields the angular dependent horizon. As a result, highly nontrivial kinetic-mixings appear among the spherical Kaluza-Klein modes of the (1+1)d near-horizon reduced theory, which obscures the traditional derivation of the Hawking flux. However, after a series of field re-definitions, we can disentangle the mode-mixings into canonical normal modes, but the reduced metrics for these normal modes are mode-dependent. Despite of this, the resultant Hawking flux turns out to be mode-independent and remains the same as the Schwarzschild's one. Thus, one cannot tell the black holes with nonlinear supertranslation hairs from the Schwarzschild's one by examining the Hawking flux, so that the nonlinear soft hairs can be thought as the microstates.
description: 9 pages ; v2: references added and minor modification, v3: accepted version, v4: [28] is added and typos in (22) and (36) are corrected
Optimization of Genotyping-by-Sequencing (GBS) for germplasm fingerprinting and trait mapping in faba bean
Creators: name: Zhang, Hailin
name: Fechete, Lavinia I.
name: Himmelbach, Axel
name: Poehlein, Anja
name: Lohwasser, Ulrike
name: Börner, Andreas
name: Maalouf, Fouad
name: Kumar, Shiv
name: Khazaei, Hamid
name: Stein, Nils
name: Jayakodi, Murukarthick
Publisher: name: Universitäts- und Landesbibliothek Sachsen-Anhalt
Year: 2024
Subjects: subject: 570

description: Faba bean (Vicia faba L.) is an important pulse crop with a wide range of agroecological adaptations. The development of genomic tools and a comprehensive catalog of extant genetic diversity are crucial for developing improved faba bean cultivars. The lack of a cost-effective genotyping platform limits the characterization of large germplasm collections, understanding of genetic diversity across populations, and implementing breeder's tools like genomic selection. Genotyping-by-sequencing (GBS) offers high-resolution genotyping for both model and crop plant species, even without a reference genome sequence. The genome fragments targeted by GBS depend substantially on the restriction enzyme (RE) used for the complexity reduction step. Species with complex genomic architecture require optimization of GBS with proper RE to realize the full potential of GBS. Here, we evaluated various REs in the GBS method and identified that the combination of ApeKI/MseI proved to be the most appropriate for faba bean based on the best library quality, a high number of genomic loci spread across chromosomes, and high enrichment loci associated with the gene space. With the new optimized protocol, we constructed a genetic map using a recombinant inbred line (RIL) population and identified a QTL for seed hilum color on Chromosome 1. In addition, we also genotyped a diversity panel and performed a genome-wide association studies (GWAS) for important agronomic traits, including plant height (PH), flowering time (FT), and number of pods per plant (PPP). We identified six SNP markers significantly associated with these traits and listed potential candidate genes. The optimized faba bean-specific GBS procedure will facilitate access to the untapped genetic diversity for genetic research and breeding and may facilitate functional genomics.
Orchesella orientalis Stach 1960
Creators: name: Thibaud, Jean-Marc
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Orchesellidae
Orchesella
Orchesella orientalis

description: Orchesella orientalis Stach, 1960
Orchesella orientalis Stach, 1960: 72.
DISTRIBUTION. — Ariège. Forêtde Freychinède, 1350 m (Lek- Ang etal. 2007).
Haute-Garonne. Gar-Cagire près de Saint-Gaudens (Salmon et al. 2010).
Hautes-Pyrénées. Orédon, valléed’Aure (Cassagnau 1964a; Lauga- Reyrel & Lauga 1995).
ÉCOLOGIE. — Lek-Ang etal. 2007; Salmon etal. 2010 (diversité, peuplement, endémisme).
description: Published as part of Thibaud, Jean-Marc, 2017, Catalogue des collemboles de France, pp. 297-436 in Zoosystema 39 (3) on page 386, DOI: 10.5252/z2017n3a1, http://zenodo.org/record/5496272
On the alignment of T Tauri stars with the local magnetic field
Creators: name: Duchene, G.
name: Menard, F.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Magnetic field is believed to play an important role in the collapse of a molecular cloud. In particular, due to the properties of magnetic forces, collapse should be easier along magnetic field lines, as supported by the large-scale sheet-like structure of the Taurus giant molecular cloud for instance. Here we investigate whether such a prefered orientation for collapse is present at a much smaller scale, that of individual objects. We use recent high-angular resolution images of T Tauri stars located in the Taurus star-forming region to find the orientation of the symmetry axis of each star+jet+disk system and compare it to that of the local magnetic field. We find that i) the orientations of the symmetry axis of T Tauri stars are not random with respect to the magnetic field, and ii) that young stars that are associated to a jet or an outflow are oriented very differently from those which do not have a detected outflow. We present some implications of this puzzling new result.
description: 8 pages, 2 figures, to appear in the conference proceedings of "Open Issues in Local Star Formation and Early Stellar Evolution", held in Ouro Preto (Brazil), April 5-10, 2003
Additional file 26 of The round goby genome provides insights into mechanisms that may facilitate biological invasions
Creators: name: Adrian-Kalchhauser, Irene
name: Blomberg, Anders
name: Larsson, Tomas
name: Musilova, Zuzana
name: Peart, Claire
name: Pippel, Martin
name: Solbakken, Monica
name: Suurväli, Jaanus
name: Walser, Jean-Claude
name: Wilson, Joanna
name: Rosenblad, Magnus Alm
name: Demian Burguera
name: Gutnik, Silvia
name: Michiels, Nico
name: Töpel, Mats
name: Pankov, Kirill
name: Schloissnig, Siegfried
name: Winkler, Sylke
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Osmoregulatory protein sequences used for tree building.