cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Mycotretus trifasciatus Guerin 1956
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycotretus
Mycotretus trifasciatus

description: 121. Mycotretus trifasciatus Guérin, 1956
Mycotretus trifasciatus Guérin, 1956: 63. Type locality: “Nova Teutonia, Estado de Santa Catarina ” [state of Santa Catarina, Brazil].
Mycotretus trifasciatus – Alvarenga 1994: 37. — Pecci-Maddalena & Lopes-Andrade 2017: 153.
Primary type
Holotype (Fig. 22A)
BRAZIL • “TIPO [red label, printed] \ N. Teutonia., S. Catarina. [printed], 12.948 [handwritten] \ Coll. J. Guérin., S. Paulo., Brasil. [printed], 18407 [handwritten] \ 194, Brasilien, Nova Teutonia, 27º 11 B, 52º 23’ L, Fritz Plaumann, 3500 m [printed] \ Mycotretus trifasciatus J. Guer [handwritten], J. Guerin det. 19[printed]54 [handwritten]”; MZSP.
Other specimens examined
See Pecci-Maddalena & Lopes-Andrade (2017).
Distribution
South and Southeast Brazil, with one doubtful record in Obidos (in the state of Pará, North Brazil) (Pecci-Maddalena & Lopes-Andrade 2017).
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on pages 100-101, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
Homotopy string links over surfaces
Creators: name: Yurasovskaya, Ekaterina
Publisher: name: University of British Columbia
Year: 2008

description: In his 1947 work "Theory of Braids" Emil Artin asked whether the braid group remained unchanged when one considered classes of braids under linkhomotopy, allowing each strand of a braid to pass through itself but not through other strands. We generalize Artin's question to string links over orientable surface M and show that under link-homotopy surface string links form a group PBn(M), which is isomorphic to a quotient of the surface pure braid group PBn(M). Surface braid groups and their properties are an area of active research by González-Meneses, Paris and Rolfsen, Goçalves and Guaschi, and our work explores the geometric and visual beauty of this subject. We compute a presentation of PBn(M) in terms of the generators and relations and discuss the orderability of the group in the case when the surface in question is a unit disk D.
Additional file 2: Figure S1. of Phylogeographic data revealed shallow genetic structure in the kelp Saccharina japonica (Laminariales, Phaeophyta)
Creators: name: Zhang, Jie
name: Yao, Jian-Ting
name: Sun, Zhong-Min
name: Fu, Gang
name: Galanin, Dmitry
name: Nagasato, Chikako
name: Motomura, Taizo
name: Hu, Zi-Min
name: Duan, De-Lin
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 60506 Virology

description: Tessellation illustration of Bayesian analysis of population structure. Each cell of the tessellation corresponds to the physical neighborhood of an observed data point. Various colors indicate genetic groupings as retrieved by phylogenetic analyses. (PDF 238Â kb)
[OIII] emission in z=2 quasars with and without Broad Absorption Lines
Creators: name: Temple, Matthew J.
name: Rankine, Amy L.
name: Banerji, Manda
name: Hennawi, Joseph F.
name: Hewett, Paul C.
name: Matthews, James H.
name: Nanni, Riccardo
name: Ricci, Claudio
name: Richards, Gordon T.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Understanding the links between different phases of outflows from active galactic nuclei is a key goal in extragalactic astrophysics. Here we compare [OIII] $λλ$4960,5008 outflow signatures in quasars with and without Broad Absorption Lines (BALs), aiming to test how the broad absorption troughs seen in the rest-frame ultraviolet are linked to the narrow line region outflows seen in the rest-frame optical. We present new near-infrared spectra from Magellan/FIRE which cover [OIII] in 12 quasars with 2.1 < z < 2.3, selected to have strong outflow signatures in CIV $λ$1550. Combining with data from the literature, we build a sample of 73 BAL, 115 miniBAL and 125 non-BAL QSOs with 1.5 < z < 2.6. The strength and velocity width of [OIII] correlate strongly with the CIV emission properties, but no significant difference is seen in the [OIII] emission-line properties between the BALs, non-BALs and miniBALs once the dependence on CIV emission is taken into account. A weak correlation is observed between the velocities of CIV BALs and [OIII] emission, which is accounted for by the fact that both outflow signatures correlate with the underlying CIV emission properties. Our results add to the growing evidence that BALs and non-BALs are drawn from the same parent population and are consistent with a scenario wherein BAL troughs are intermittent tracers of persistent quasar outflows, with a part of such outflow becoming optically thick along our line-of-sight for sporadic periods of time within which BALs are observed.
description: 14 pages, 6 figures. Accepted for publication in MNRAS
Mycotretus cinctellus
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycotretus
Mycotretus cinctellus

description: Mycotretus cinctellus (Guérin-Méneville, 1841)
Erotylus cinctellus Guérin-Méneville, 1841: 153–154 (Fig. 22B). Type locality: “ Bolivie ”.
Mycotretus cinctellus – Lacordaire 1842: 178. — Crotch 1876: 447. — Gemminger & Harold 1876: 3692. — Kuhnt 1909: 71; 1911: 48. — Bruch 1914: 384. — Deelder 1942: 88. — Mader 1942: 172; 1951: 212. — Blackwelder 1945: 466. — Alvarenga 1994: 22. — Skelley 1998b: 16. — McHugh & Chaboo 2015: 278;
Mycomystes cinctellus – Pecci-Maddalena et al. 2021b: 3080.
Primary type
Lectotype (Fig. 22B)
BOLIVIA • “ Mycotretus cinctellus [handwritten] \ Coll. Thoms. [printed] \ Brésil [printed] \ Type [white label, printed]”; Collection Maurice Sedillot; MNHN.
Remarks
Synonym of Mycomystes melanophthalmus (Duponchel, 1825) (Fig. 13D, see Pecci-Maddalena et al. 2021b).
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on page 101, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
Pharmacological neuroprotection for spinal cord injury
Creators: name: Mann, Cody Mandeep
Publisher: name: University of British Columbia
Year: 2008

description: Spinal cord injuries can cause the catastrophic loss of motor and sensory function. The neurological deficits that result are the consequence of not only the primary injury to the spinal cord, but also a complex milieu of secondary pathological processes that are now beginning to be understood. The major mechanisms that underlie this secondary pathology include vascular disruption, ischemia, oxidative stress, excitotoxicity, and inflammation. In light of this, the fact that this secondary pathology occurs after the initial impact makes it potentially amenable to therapeutic intervention. Pharmacotherapies may attenuate some of these processes and minimize secondary damage. Some of the promising treatments that are emerging for acute spinal cord injury are drugs that are already used by physicians for the treatment of unrelated diseases. These drugs, which have already been established to be safe for humans, offer the unique advantage over other novel therapeutic interventions that have yet to be tested in humans. This would save a tremendous amount of time and money needed for human safety studies, if considered as a treatment for spinal cord injury. Examples of such drugs include minocycline (an antibiotic), erythropoietin (a recombinant hormone used to treat anemia), and statins (a popular class of blood cholesterol reducers), all of which have demonstrated the ability to attenuate the various pathophysiological processes initiated after trauma to the central nervous system. In a series of studies, erythropoietin, darbepoetin, atorvastatin, simvastatin, and minocycline were all evaluated for their ability to improve neurologic recovery in a clinically relevant model of spinal cord injury. My experiments revealed that erythropoietin, darbepoetin, atorvastatin and minocycline did not significantly improve neurological recovery. These negative results were in stark contrast to the positive findings which had been published in the literature suggesting that differences in experimental models and methodology influence the neuroprotective efficacy of these drugs. Simvastatin, on the other hand, demonstrated significant improvements in locomotor and histological outcomes. Although this is indeed exciting, the results were modest at best. My results highlight the need for further preclinical work on the above treatments to refine and optimize them prior to proposing them for human testing.
Additional file 7: Figure S4. of Phylogeographic data revealed shallow genetic structure in the kelp Saccharina japonica (Laminariales, Phaeophyta)
Creators: name: Zhang, Jie
name: Yao, Jian-Ting
name: Sun, Zhong-Min
name: Fu, Gang
name: Galanin, Dmitry
name: Nagasato, Chikako
name: Motomura, Taizo
name: Hu, Zi-Min
name: Duan, De-Lin
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: Bayesian skyline plots showing effective population size as a function of time. (a) inferred from single sequence COI; (b) inferred from single sequence trnW-L;(c) inferred from combined mtDNA sequences (COI + trnW-L). The upper and lower limits of light blue trend represent the 95 % confidence intervals of HPD analysis. (PDF 150 kb)
Phaenostoma d'Orchymont 1937
Creators: name: Gustafson, Grey T.
name: Short, Andrew E. Z.
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Hydrophilidae
Phaenostoma

description: Key to the species of Phaenostoma d’Orchymont, 1937
1 Size greater than 2.8 mm. Elytral ground punctation not impressed in recessed ‘disc’ punctures (Fig. 1). Parameres wider, nearly parallel-sided in basal ¾, slightly curved inward apically (Figs. 2A, C, D). ................................................................................................ 2
– Size less than 2.4 mm. Elytral ground punctation impressed in recessed ‘disc’ punctures (Fig. 3). Parameres very narrow, arcuatelly bent inward from base to apex (Fig. 2B). ..... .............................................................................................................. P. kontax sp. nov.
2 Size generally larger (> 3.0 mm). Aedeagus with apex of parameres strongly sinuate (Fig. 4A). ...................................................................................... P. posticatum (Sharp, 1887)
– Size generally smaller (<3.0 mm). Aedeagus with apex of parameres slightly inwardly curved (Figs. 4 C–D). ..................................................................... P. stochasma sp. nov.
description: Published as part of Gustafson, Grey T. & Short, Andrew E. Z., 2010, Redescription of the Neotropical water scavenger beetle genus Phaenostoma (Coleoptera: Hydrophilidae) with description of two new species, pp. 459-469 in Acta Entomologica Musei Nationalis Pragae (suppl.) (suppl.) 50 (2) on page 468, DOI: 10.5281/zenodo.4468167
Additional file 3: Table S2. of Phylogeographic data revealed shallow genetic structure in the kelp Saccharina japonica (Laminariales, Phaeophyta)
Creators: name: Zhang, Jie
name: Yao, Jian-Ting
name: Sun, Zhong-Min
name: Fu, Gang
name: Galanin, Dmitry
name: Nagasato, Chikako
name: Motomura, Taizo
name: Hu, Zi-Min
name: Duan, De-Lin
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Genetic differentiation (F ST) between the pairs of four genetic clusters. **,P
Mycotretus fallax Guerin-Meneville 1841
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycotretus
Mycotretus fallax

description: 122. Mycotretus fallax Guérin-Méneville, 1841
Erotylus fallax Guérin-Méneville, 1841: 155. Type locality: “ Brésil ”.
Mycotretus fallax – Lacordaire 1842: 153. — Crotch 1876: 453. — Gemminger & Harold 1876: 3692. — Kuhnt 1909: 76; 1911: 49. — Blackwelder 1945: 466. — Guérin 1948: 19. — Alvarenga 1994: 25. — Skelley 1998b: 17. — Pecci-Maddalena et al. 2021a: 955.
Primary type
Lectotype, here designated (Fig. 22C)
BRAZIL • “ Mycotretus fallax. guer. Rev. Type, zool. Brésil. [handwritten] \ Type [printed] \ Lectotipo [red label, printed]”; MNHN.
Other specimens examined
BRAZIL • 1 ♂ (dissected); “Coleção M. Alvarenga [printed] \ BARUERI, S. Paulo BRASIL [printed] 7.II.1960 [handwritten] K. Lenko leg. [printed] \ DZUP 235139 [printed]”; DZUP • 1 ♂ (dissected); “ BRASIL: MG, Viçosa; “ Mata do Paraíso, trilha do pesquisador ”, 11.X.2016; I Souza-Gonçalves, P Borlini, C Lopes-Andrade leg [printed] \ ex Pleurotus ostreatus [printed]”; CELC • 1 ♀ (dissected); “ BRASIL: MG, Ingaí: “ Boqueirão próx. Poço Bonito ” xi. 2002 leg. R.J.Silva [printed]”; CELC.
Distribution
Southeast and South Brazil.
Remarks
The names “ amoenus Dej.” and “ fallax Chevrolat ” appears in the Dejean Catalogue (1836) within the same pair of brackets. Both names were published before 1931 and lack a description or an indication of the taxon they denote. Therefore, they fail to conform to Article 12 of the CODE (ICZN 1999) and here are considered nomina nuda. The “Lectotipo” label is that used by Alvarenga, and was likely placed on the specimen when he studied it. We accept and validate that designation.
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on pages 101-102, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
Additional file 5: Figure S2. of Phylogeographic data revealed shallow genetic structure in the kelp Saccharina japonica (Laminariales, Phaeophyta)
Creators: name: Zhang, Jie
name: Yao, Jian-Ting
name: Sun, Zhong-Min
name: Fu, Gang
name: Galanin, Dmitry
name: Nagasato, Chikako
name: Motomura, Taizo
name: Hu, Zi-Min
name: Duan, De-Lin
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: Isolation-by distance (IBD) analyses within 22 populations (except for four populations in China and Korea). Regression of genetic differentiation (estimated by F ST/(1- F ST)) against logarithm of geographical distances (km). (PDF 36Â kb)
FoRAG: Factuality-optimized Retrieval Augmented Generation for Web-enhanced Long-form Question Answering
Creators: name: Cai, Tianchi
name: Tan, Zhiwen
name: Song, Xierui
name: Sun, Tao
name: Jiang, Jiyan
name: Xu, Yunqi
name: Zhang, Yinger
name: Gu, Jinjie
Publisher: name: arXiv
Year: 2024
Subjects: subject: Computation and Language (cs.CL)
subject: FOS: Computer and information sciences

description: Retrieval Augmented Generation (RAG) has become prevalent in question-answering (QA) tasks due to its ability of utilizing search engine to enhance the quality of long-form question-answering (LFQA). Despite the emergence of various open source methods and web-enhanced commercial systems such as Bing Chat, two critical problems remain unsolved, i.e., the lack of factuality and clear logic in the generated long-form answers. In this paper, we remedy these issues via a systematic study on answer generation in web-enhanced LFQA. Specifically, we first propose a novel outline-enhanced generator to achieve clear logic in the generation of multifaceted answers and construct two datasets accordingly. Then we propose a factuality optimization method based on a carefully designed doubly fine-grained RLHF framework, which contains automatic evaluation and reward modeling in different levels of granularity. Our generic framework comprises conventional fine-grained RLHF methods as special cases. Extensive experiments verify the superiority of our proposed \textit{Factuality-optimized RAG (FoRAG)} method on both English and Chinese benchmarks. In particular, when applying our method to Llama2-7B-chat, the derived model FoRAG-L-7B outperforms WebGPT-175B in terms of three commonly used metrics (i.e., coherence, helpfulness, and factuality), while the number of parameters is much smaller (only 1/24 of that of WebGPT-175B). Our datasets and models are made publicly available for better reproducibility: https://huggingface.co/forag.
Mycotretus sedecimguttatus
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycotretus
Mycotretus sedecimguttatus

description: 123. Mycotretus sedecimguttatus (Guérin-Méneville, 1844)
Ischyrus sedecimguttatus Guérin-Méneville, 1844: 310. Type locality: “ Colombie ”.
Mycotretus sedecimguttatus – Crotch 1876: 440. — Gemminger & Harold 1876: 3695. — Kuhnt 1909: 71; 1911: 53. — Blackwelder 1945: 467. — Alvarenga 1994: 35. — Skelley 1998b: 15.
Type specimen
Not found.
Other specimens examined
COLOMBIA • 1 spec. (Fig. 22D); “TYPE. [printed, crossed out], 16-guttatus, ex descr. [handwritten] \ L [printed] \ N gran [handwritten]”; UMZC.
Distribution
Unknown locality in Colombia.
Remarks
The unique individual examined by us has a label “ex descr”, which means “ex description”, and it was probably identified by Crotch based on the original description by Guérin-Méneville. Labels with the word “ Type.” crossed out by Crotch indicate the specimen is probably not the type (Skelley 1998b).
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on page 102, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
Additional file 8: Figure S5. of Phylogeographic data revealed shallow genetic structure in the kelp Saccharina japonica (Laminariales, Phaeophyta)
Creators: name: Zhang, Jie
name: Yao, Jian-Ting
name: Sun, Zhong-Min
name: Fu, Gang
name: Galanin, Dmitry
name: Nagasato, Chikako
name: Motomura, Taizo
name: Hu, Zi-Min
name: Duan, De-Lin
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: Maximum clade credibility coalescent tree, based on COI. (PDF 57Â kb)
Enhancing the LLM-Based Robot Manipulation Through Human-Robot Collaboration
Creators: name: Liu, Haokun
name: Zhu, Yaonan
name: Kato, Kenji
name: Tsukahara, Atsushi
name: Kondo, Izumi
name: Aoyama, Tadayoshi
name: Hasegawa, Yasuhisa
Publisher: name: arXiv
Year: 2024
Subjects: subject: Robotics (cs.RO)
subject: Artificial Intelligence (cs.AI)
subject: Human-Computer Interaction (cs.HC)
subject: FOS: Computer and information sciences

description: Large Language Models (LLMs) are gaining popularity in the field of robotics. However, LLM-based robots are limited to simple, repetitive motions due to the poor integration between language models, robots, and the environment. This paper proposes a novel approach to enhance the performance of LLM-based autonomous manipulation through Human-Robot Collaboration (HRC). The approach involves using a prompted GPT-4 language model to decompose high-level language commands into sequences of motions that can be executed by the robot. The system also employs a YOLO-based perception algorithm, providing visual cues to the LLM, which aids in planning feasible motions within the specific environment. Additionally, an HRC method is proposed by combining teleoperation and Dynamic Movement Primitives (DMP), allowing the LLM-based robot to learn from human guidance. Real-world experiments have been conducted using the Toyota Human Support Robot for manipulation tasks. The outcomes indicate that tasks requiring complex trajectory planning and reasoning over environments can be efficiently accomplished through the incorporation of human demonstrations.
description: IEEE Robotics and Automation Letters
Evaluation of Deep Learning Semantic Segmentation for Land Cover Mapping on Multispectral, Hyperspectral and High Spatial Aerial Imagery
Creators: name: Panuntun, Ilham Adi
name: Chen, Ying-Nong
name: Jamaluddin, Ilham
name: Tran, Thi Linh Chi
Publisher: name: arXiv
Year: 2024
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: In the rise of climate change, land cover mapping has become such an urgent need in environmental monitoring. The accuracy of land cover classification has gotten increasingly based on the improvement of remote sensing data. Land cover classification using satellite imageries has been explored and become more prevalent in recent years, but the methodologies remain some drawbacks of subjective and time-consuming. Some deep learning techniques have been utilized to overcome these limitations. However, most studies implemented just one image type to evaluate algorithms for land cover mapping. Therefore, our study conducted deep learning semantic segmentation in multispectral, hyperspectral, and high spatial aerial image datasets for landcover mapping. This research implemented a semantic segmentation method such as Unet, Linknet, FPN, and PSPnet for categorizing vegetation, water, and others (i.e., soil and impervious surface). The LinkNet model obtained high accuracy in IoU (Intersection Over Union) at 0.92 in all datasets, which is comparable with other mentioned techniques. In evaluation with different image types, the multispectral images showed higher performance with the IoU, and F1-score are 0.993 and 0.997, respectively. Our outcome highlighted the efficiency and broad applicability of LinkNet and multispectral image on land cover classification. This research contributes to establishing an approach on landcover segmentation via open source for long-term future application.
description: conference, This preprint is based on the following published conference article: Panuntun, I. A., Chen, Y.-N., Jamaluddin, I., & Tran, T. L. C., 2023. Evaluation of Deep Learning Semantic Segmentation for Land Cover Mapping on Multispectral, Hyperspectral and High Spatial Aerial Imagery. 44th Asian Conference on Remote Sensing, ACRS 2023. Code 198676
Additional file 3: of Transcriptome analysis reveals the effects of sugar metabolism and auxin and cytokinin signaling pathways on root growth and development of grafted apple
Creators: name: Guofang Li
name: Juanjuan Ma
name: Tan, Ming
name: Jiangping Mao
name: An, Na
name: Guangli Sha
name: Zhang, Dong
name: Caiping Zhao
name: Mingyu Han
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Computational Biology

description: Selected genes related to sugar metabolism. (DOC 93Â kb)
Additional file 1: of Transcriptome analysis reveals the effects of sugar metabolism and auxin and cytokinin signaling pathways on root growth and development of grafted apple
Creators: name: Guofang Li
name: Juanjuan Ma
name: Tan, Ming
name: Jiangping Mao
name: An, Na
name: Guangli Sha
name: Zhang, Dong
name: Caiping Zhao
name: Mingyu Han
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: Plant Biology
subject: Computational Biology

description: Photosynthetic parameters of WT and MB grafted apple leaves. Comparison of photosynthetic parameters, including net photosynthetic rate (Pn), stomatal conductance (Gs) and intercellular CO2 concentration (Ci), in WT and MB leaves. Values are means ± SE (n = 10). Significant differences (*P
Mycotretus sobrinus
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycotretus
Mycotretus sobrinus

description: 124. Mycotretus sobrinus (Guérin-Méneville, 1841)
Erotylus sobrinus Guérin-Méneville, 1841: 154. Type locality: “ Brésil ”.
Mycotretus silaceus Lacordaire, 1842: 187 (Fig. 37A). Type locality: “ Brésil ”.
Mycotretus sobrinus – Lacordaire 1842: 186. — Crotch 1876: 456. — Gemminger & Harold 1876: 3695. — Gorham 1888: 60. — Kuhnt 1909: 72; 1911: 53. — Deelder 1942: 90. — Blackwelder 1945: 467. — Guérin 1948: 20. — Alvarenga 1994: 36. — Skelley 1998b: 17. — Pecci-Maddalena et al. 2021a: 955.
Mycotretus silaceus – Gorham 1888: 60 [junior synonym]. — Alvarenga 1994: 36. — Skelley 1998b: 17.
Primary type
Lectotype, here designated (Fig. 22E)
BRAZIL • “TYPE [printed, blue label] \ TYPE. [printed] sobrinus Guér [handwritten] \ LECTOTYPE [printed] Erotylus (Brachymerus) sobrinus Guérin-Meneville, 1841 [red label, handwritten] \ Mycotretus sobrinus (Guérin-Méneville) [handwritten] det. I. Pecci-Maddalena 2017 [printed]”; UMZC.
Other specimens examined
Paralectotype
BRAZIL • 1 spec.; “TYPE [printed, blue label] \ TYPE. [printed] simplex Guéri. [handwritten] \ PARALECTOTYPE [printed]? Erotylus (Brachymerus) sobrinus Guérin-Méneville, 1841 [yellow label, handwritten] \ Mycotretus sobrinus (Guérin-Méneville) [handwritten] det. I. Pecci-Maddalena 2017 [printed]”; UMZC.
Additional material
BRAZIL • 2 specs; “K [printed]”; UMZC • 1 spec.; “S Paul [handwritten]”; UMZC • 1 spec; “ Chevr. [printed]”; UMZC • 1 ♂ (dissected); “Coleção M.Alvarenga [printed] \ Homeotipo [printed] \ Mycotretus sobrinus Guèrin, 1841 [handwritten] M. Alvarenga det. [printed] 1971 [handwritten] \ CORCOVADO, Guanabara BRASIL [printed] X. 1966 [handwritten] Alvarenga & Seabra [printed] \ 1678 [printed]”; MNRJ • 1 ♀; “ Brasil: MG, Piau, 13.xii.2014, Pecci-Maddalena, I.S.C. leg. [printed]”; CELC.
Distribution
The type is from an unknown locality in Brazil, but the other specimens are from Southeast Brazil.
Remarks
As pointed out by Skelley (1998b) the name Mycotretus simplex is probably a nomen nudum. However, based on its label “TYPE” we considered that specimen a paralectotype of M. sobrinus and we included a question mark (?) indicating doubt.
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on pages 102-104, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
Essays in housing and macroeconomy
Creators: name: Huang, Haifang
Publisher: name: University of British Columbia
Year: 2008

description: Compared to the previous twenty years, residential investments in the US appear more stable after the mid-1980s. Chapter 2 explores key hypotheses regarding the underlying causes. In particular, it uses estimated DSGE models to examine whether a more responsive interest rate policy stabilizes the housing market by keeping inflation in check. These estimations indeed found a policy that has become more responsive over time. Counter-factual analysis confirms that the change stabilizes inflation as well as nominal interest rate. It does not, however, find the change in policy to have stabilizing effect on real economic activity including housing investment. It finds that smaller TFP shocks make modest contributions, while the biggest contributing factor to the fall in the housing volatility is a reduction in the sensitivity of the investment to demand variations. Chapter 3 constructs a richly specified model for the housing market to examine the empirical relevance of various costs and frictions, including the investment adjustment cost, sticky construction costs, search frictions, and sluggish adjustment of house prices. Using the US national-level quarterly data from 1985 and 2007, we find that the gradual adjustment of house prices is the most important and irreplaceable feature of the model. The key to developing an optimization-based empirical housing model, therefore, is to provide a structural interpretation for the slow adjustment in house prices. Chapter 4 uses US national-level time series of residential investment, price index of new houses, consumption and interest rate to explore whether the US, as a nation, experienced a drop in the price elasticity of supply of new housing. Maximum likelihood estimations with a simple stock-and-flow model found a statistically significant drop of the elasticity from 10 to 2.2, when the quarterly data between 1971 and 2007 are split at 1985. A richer model with mechanisms of gradual adjustment also indicates such a reduction, when existing knowledge about the adjustment parameters is incorporated in the analysis. For the Federal Reserve, an inelastic supply can be a source of concern, because policy-driven demand in housing market is more likely to trigger undesirable swings in prices.
Campeprosopa
Creators: name: Mason, Franco
name: Nÿ, Rudolf Rozko Š
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Stratiomyidae
Campeprosopa

description: Key to species of Campeprosopa
1. Male eyes touching (Fig. 24), female sternite 2 with a short central subconical prominence (Figs 37–38) ............................................................................................................................... C. longispina (Brunetti)
- Eyes separated by a frontal vitta in both sexes, female sternite 2 without any central prominence...........2
2. Hind tibia black or with a yellow submedian transverse band and hind basitarsus partly, or completely black (Fig. 12), rarely entirely yellow ......................................................................... C. flavipes Macquart
- Hind tibia yellow in basal third at least (Fig. 6) and hind basitarsus always completely black ................... ................................................................................................................................... C. borneensis Lindner
description: Published as part of Mason, Franco & Nÿ, Rudolf Rozko Š, 2008, A review of the Oriental Campeprosopa species (Diptera: Stratiomyidae), pp. 49-64 in Zootaxa 1794 on page 51, DOI: 10.5281/zenodo.182619
Additional file 7: of Transcriptome analysis reveals the effects of sugar metabolism and auxin and cytokinin signaling pathways on root growth and development of grafted apple
Creators: name: Guofang Li
name: Juanjuan Ma
name: Tan, Ming
name: Jiangping Mao
name: An, Na
name: Guangli Sha
name: Zhang, Dong
name: Caiping Zhao
name: Mingyu Han
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology
subject: Computational Biology

description: Selected differentially expressed genes related to salicylic and jasmonic acid signaling and nitrogen metabolism. (DOC 48Â kb)
Steady axisymmetric vortices in radial stagnation flows
Creators: name: Rajamanickam, Prabakaran
name: Weiss, Adam D.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: A class of axisymmetric vortex solutions superposed upon radial stagnation flows is described. The new vortex solutions generalize the classical Burgers' vortex and Sullivan's vortex solutions in the presence of a volumetric line source at the symmetry axis, the former approaching the Burgers' vortex sheet when the source strength becomes very large. The stability of the generalized Burgers' vortex is studied. In a different manner from the classical solution, the generalized Burgers' vortices are found to be unstable for two-dimensional disturbances when the vortex Reynolds number is increased above a critical value, for a fixed strength of the volumetric source.
Additional file 8: of Transcriptome analysis reveals the effects of sugar metabolism and auxin and cytokinin signaling pathways on root growth and development of grafted apple
Creators: name: Guofang Li
name: Juanjuan Ma
name: Tan, Ming
name: Jiangping Mao
name: An, Na
name: Guangli Sha
name: Zhang, Dong
name: Caiping Zhao
name: Mingyu Han
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Gene-specific primers used for quantitative real-time PCR. (DOC 37Â kb)
Dispersion of solute in straining flows and boundary layers
Creators: name: Rajamanickam, Prabakaran
Publisher: name: arXiv
Year: 2024
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: Solute dispersion due to an instantaneously released source in steady, laminar, axisymmetric flows with an axial inflow and radial outflow is investigated analytically. Attention is given to large-time characteristics of dispersion, where the concentration reduces in proportion to $e^{-2λτ}$, where $λ$ is an eigenvalue that depends on the axial inflow and $τ$ is the time measured in units of axial-diffusion times. Prospects of some other flows are also considered.
Additional file 2: Table S2. of DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases
Creators: name: Symen Ligthart
name: Marzi, Carola
name: Aslibekyan, Stella
name: Mendelson, Michael
name: Conneely, Karen
name: Tanaka, Toshiko
name: Colicino, Elena
name: Waite, Lindsay
name: Joehanes, Roby
name: Weihua Guan
name: Brody, Jennifer
name: Elks, Cathy
name: Marioni, Riccardo
name: Jhun, Min
name: Golareh Agha
name: Bressler, Jan
name: Cavin Ward-Caviness
name: Chen, Brian
name: Tianxiao Huan
name: Bakulski, Kelly
name: Salfati, Elias
name: Fiorito, Giovanni
name: Wahl, Simone
name: Schramm, Katharina
name: Sha, Jin
name: Hernandez, Dena
name: Just, Allan
name: Smith, Jennifer
name: Sotoodehnia, Nona
name: Pilling, Luke
name: Pankow, James
name: Tsao, Phil
name: Chunyu Liu
name: Zhao, Wei
name: Guarrera, Simonetta
name: Michopoulos, Vasiliki
name: Smith, Alicia
name: Peters, Marjolein
name: Melzer, David
name: Pantel Vokonas
name: Fornage, Myriam
name: Prokisch, Holger
name: Bis, Joshua
name: Chu, Audrey
name: Herder, Christian
name: Grallert, Harald
name: Yao, Chen
name: Shah, Sonia
name: McRae, Allan
name: Honghuang Lin
name: Horvath, Steve
name: Fallin, Daniele
name: Hofman, Albert
name: Wareham, Nicholas
name: Wiggins, Kerri
name: Feinberg, Andrew
name: Starr, John
name: Visscher, Peter
name: Murabito, Joanne
name: Kardia, Sharon
name: Absher, Devin
name: Binder, Elisabeth
name: Singleton, Andrew
name: Bandinelli, Stefania
name: Peters, Annette
name: Waldenberger, Melanie
name: Matullo, Giuseppe
name: Schwartz, Joel
name: Demerath, Ellen
name: AndrĂŠ Uitterlinden
name: Meurs, Joyce Van
name: Franco, Oscar
name: Yii-Der Chen
name: Levy, Daniel
name: Turner, Stephen
name: Deary, Ian
name: Ressler, Kerry
name: JosĂŠe Dupuis
name: Ferrucci, Luigi
name: Ong, Ken
name: Themistocles Assimes
name: Boerwinkle, Eric
name: Koenig, Wolfgang
name: Arnett, Donna
name: Baccarelli, Andrea
name: Emelia Benjamin
name: Dehghan, Abbas
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Marine Biology
subject: Cancer

description: Study-specific quality control and analysis details. (PDF 475 kb)
Mycotretus seminiger Harold 1876
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycotretus
Mycotretus seminiger

description: 125. Mycotretus seminiger Harold, 1876
Mycotretus dimidiatus Crotch, 1876: 444 [nec Taschenberg, 1870]. Type locality: “Ega” [= Tefé, in the state of Amazonas, North Brazil].
Mycotretus seminiger Harold, 1876: 174. Type locality: “Ega” [= Tefé, in the state of Amazonas, North Brazil].
Mycotretus dimidiatus – Alvarenga 1994: 35. — Skelley 1998b: 16.
Mycotretus seminiger – Alvarenga 1994: 35. — Skelley 1998b: 16.
Primary type
Lectotype, here designated (Fig. 6B)
BRAZIL • “TYPE [blue label, printed] \ TYPE. Dimidiatus Ega Bates, handwritten] \ LECTOTYPE [printed], Mycotretus dimidiatus Crotch, 1876 [red label, handwritten]”; UMZC.
Other specimens examined
1 ♂ (dissected); “Coleção M. Alvarenga [printed] \ Homeotipo [printed] \ FORTE PRINCIPE, Rondônia, Brasil [printed] XI. 1962 [handwritten] W. Bokermann [printed] \ Comparado com tipo [printed], Mycotretus dimidiatus Crotch, 1876 [handwritten], M. Alvarenga det. 1971 [printed] \ Mycotretus seminiger Harold, 1876 [handwritten], M. Alvarenga det. [printed], 1984 [handwritten] \ 20-38-A [handwritten]”; MNRJ.
Remarks
Harold (1876) proposed the new specific name Mycotretus seminiger Harold, 1876 to replace Mycotretus dimidiatus Crotch, 1876. Taschenberg (1870) described a species called M. dimidiatus, so therefore the name proposed by Crotch (1876) is a junior homonym. The present combination is a replacement name, Mycotretus seminiger Harold, 1876, not Mycotretus dimidiatus Taschenberg, 1870, fide Alvarenga (1994) and Skelley (1998b).
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on pages 104-105, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
Additional file 5: of Transcriptome analysis reveals the effects of sugar metabolism and auxin and cytokinin signaling pathways on root growth and development of grafted apple
Creators: name: Guofang Li
name: Juanjuan Ma
name: Tan, Ming
name: Jiangping Mao
name: An, Na
name: Guangli Sha
name: Zhang, Dong
name: Caiping Zhao
name: Mingyu Han
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Selected root development-related genes from RNA sequencing data. (DOC 46Â kb)
A note on viscous flow induced by half-line sources bounded by conical surfaces
Creators: name: Rajamanickam, Prabakaran
name: Weiss, Adam D.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: In this paper axisymmetric solutions of the Navier-Stokes equations governing the flow induced by a half-line source when the fluid domain is bounded by a conical wall are discussed. Two types of boundary conditions are identified; one in which the radial velocity along the axis is prescribed, and the other in which the radial velocity along the axis is obtained as an eigenvalue of the problem. The existence of these solutions are limited to a range of Reynolds numbers and the transition from one case to the other are discussed in detail.
A thick reaction zone model for premixed flames in two-dimensional channels
Creators: name: Rajamanickam, Prabakaran
name: Daou, Joel
Publisher: name: arXiv
Year: 2024
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: Direct interactions between the flow field and the chemical reaction in premixed flames occur when the reaction zone thickness is comparable to, or greater than flow length scales. To study such interactions, a laminar model is considered that has direct bearings to steadily propagating deflagrations in a Hele-Shaw channel with a background plane Poiseuille flow. The study employs asymptotic analyses, pertaining to large activation energy and lubrication theories and considers a distinguished limit where the channel width is comparable to the reaction zone thickness, with account being taken of thermal-expansion and heat-loss effects. The reaction zone structure and burning rates depend on three parameters, namely, the Peclet number, $\mathcal{P}$, the Lewis number, $Le$ and the ratio of channel half-width to reaction zone thickness, $λ_*$. When the parameter $λ_*$ is small, transport processes are controlled by Taylor's dispersion mechanism and an explicit formula for the effective burning speed $S_T$ is obtained. The formula indicates that $S_T/S_L \propto 1/Le$ for $\mathcal{P}\gg 1$, which interestingly coincides with a recent experimental prediction of the flame speed in a highly turbulent jet flame. The results suggest that the role played by differential diffusion effects is significant both in laminar and turbulent cases. The reason for the peculiar $1/Le$ dependence can be attributed, in our laminar model, to Taylor dispersion. Presumably, this dependence may be attributed to a similar but more general mechanism in the turbulent case, rather than to diffusive-thermal curvature effects. The latter effects play however an important role in determining the flame speed when $λ_*$ is large. The magnitude of heat losses at extinction, is multiplied by a factor $1/Le^2$ in comparison with those corresponding to the no-flow case in narrow channels.
Mycotretus bicolor Kirsch 1876
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycotretus
Mycotretus bicolor

description: Mycotretus bicolor Kirsch, 1876
Mycotretus bicolor Kirsch, 1876: 101 [nec Taschenberg, 1870]. Type locality: “ Peru ” [based on type label = “Pozuzu” (= locality of Pozuzo), in the department of Pasco, Peru].
Mycotretus bicolor – Fleutiaux 1886: 223. — Kuhnt 1909: 72; 1911: 48. — Alvarenga 1994: 21.
Remarks
Mycotretus bicolor Kirsch, 1876 is a junior homonym of M. bicolor Taschenberg, 1870. Kuhnt (1911: 48) proposed M. bicoloratus as a replacement name (see below).
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on page 105, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
3D livewire and live-vessel : minimal path methods for interactive medical image segmentation
Creators: name: Poon, Miranda
Publisher: name: University of British Columbia
Year: 2008

description: Medical image analysis is a ubiquitous and essential part of modem health care. A crucial first step to this is segmentation, which is often complicated by many factors including subject diversity, pathology, noise corruption, and poor image resolution. Traditionally, manual tracing by experts was done. While considered accurate, this process is time consuming and tedious, especially when performed slice-by-slice on three-dimensional (3D) images over large datasets or on two-dimensional (2D) but topologically complicated images such as a retinography. On the other hand, fully-automated methods are typically faster, but work best with data-dependent, carefully tuned parameters and still require user validation and refinement. This thesis contributes to the field of medical image segmentation by proposing a highly-automated, interactive approach that effectively merges user knowledge and efficient computing. To this end, our work focuses on graph-based methods and offer globally optimal solutions. First, we present a novel method for 3D segmentation based on a 3D Livewire approach. This approach is an extension of the 2D Livewire framework, and this method is capable of handling objects with large protrusions, concavities, branching, and complex arbitrary topologies. Second, we propose a method for efficiently segmenting 2D vascular networks, called ‘Live-Vessel’. Live-Vessel simultaneously extracts vessel centrelines and boundary points, and globally optimizes over both spatial variables and vessel radius. Both of our proposed methods are validated on synthetic data, real medical data, and are shown to be highly reproducible, accurate, and efficient. Also, they were shown to be resilient to high amounts of noise and insensitive to internal parameterization.