cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 3 of Nonlinear mixed-effects modelling for single cell estimation: when, why, and how to use it
Creators: name: Karlsson, Markus
name: JanzĂŠn, David
name: Durrieu, Lucia
name: Colman-Lerner, Alejandro
name: Kjellsson, Maria
name: Cedersund, Gunnar
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics

description: Supplementary figures and tables. A PDF with figures showing the results of the estimation of the parameters not shown in the article, as well as tables summarising the results of the Studentâ  s t-tests for the different parameters. (PDF 1085 kb)
Double Multi-Head Attention Multimodal System for Odyssey 2024 Speech Emotion Recognition Challenge
Creators: name: Costa, Federico
name: India, Miquel
name: Hernando, Javier
Publisher: name: Zenodo
Year: 2024

description: As computer-based applications are becoming more integrated into our daily lives, the importance of Speech Emotion Recognition (SER) has increased significantly. In this paper we describe the Double Multi Head Attention Multimodal System developed for the Odyssey 2024 SER Challenge. Our proposed system achieved the third position, where 31 teams participated in total.
Dipeptidyl-peptidase 3 and IL-6: potential biomarkers for diagnostics in COVID-19 and association with pulmonary infiltrates
Creators: name: Staudner, Stephan T.
name: Leininger, Simon B.
name: Vogel, Manuel J.
name: Mustroph, Julian
name: Hubauer, Ute
name: Meindl, Christine
name: Wallner, Stefan
name: Lehn, Petra
name: Burkhardt, Ralph
name: Hanses, Frank
name: Zimmermann, Markus
name: Scharf, Gregor
name: Hamer, Okka W.
name: Maier, Lars S.
name: Hupf, Julian
name: Jungbauer, Carsten G.
Publisher: name: Universität Regensburg
Year: 2023
Subjects: subject: COVID-19 · SARS-CoV-2 · Dipeptidyl-peptidase 3 · IL-6 · Pulmonary infiltrates · Artificial intelligence
subject: 610 Medizin

description: Coronavirus SARS-CoV-2 spread worldwide, causing a respiratory disease known as COVID-19. The aim of the present study was to examine whether Dipeptidyl-peptidase 3 (DPP3) and the inflammatory biomarkers IL-6, CRP, and leucocytes are associated with COVID-19 and able to predict the severity of pulmonary infiltrates in COVID-19 patients versus non-COVID-19 patients. 114 COVID-19 patients and 35 patients with respiratory infections other than SARS-CoV-2 were included in our prospective observational study. Blood samples were collected at presentation to the emergency department. 102 COVID-19 patients and 28 non-COVID-19 patients received CT imaging (19 outpatients did not receive CT imaging). If CT imaging was available, artificial intelligence software (CT Pneumonia Analysis) was used to quantify pulmonary infiltrates. According to the median of infiltrate (14.45%), patients who obtained quantitative CT analysis were divided into two groups (> median: 55 COVID-19 and nine non-COVID-19, ≤ median: 47 COVID-19 and 19 non-COVID-19). DPP3 was significantly elevated in COVID-19 patients (median 20.85 ng/ml, 95% CI 18.34–24.40 ng/ml), as opposed to those without SARS-CoV-2 (median 13.80 ng/ml, 95% CI 11.30–17.65 ng/ml; p < 0.001, AUC = 0.72), opposite to IL-6, CRP (each p = n.s.) and leucocytes (p < 0.05, but lower levels in COVID-19 patients). Regarding binary logistic regression analysis, higher DPP3 concentrations (OR = 1.12, p < 0.001) and lower leucocytes counts (OR = 0.76, p < 0.001) were identified as significant and independent predictors of SARS-CoV-2 infection, as opposed to IL-6 and CRP (each p = n.s.). IL-6 was significantly increased in patients with infiltrate above the median compared to infiltrate below the median both in COVID-19 (p < 0.001, AUC = 0.78) and in non-COVID-19 (p < 0.05, AUC = 0.81). CRP, DPP3, and leucocytes were increased in COVID-19 patients with infiltrate above median (each p < 0.05, AUC: CRP 0.82, DPP3 0.70, leucocytes 0.67) compared to infiltrate below median, opposite to non-COVID-19 (each p = n.s.). Regarding multiple linear regression analysis in COVID-19, CRP, IL-6, and leucocytes (each p < 0.05) were associated with the degree of pulmonary infiltrates, as opposed to DPP3 (p = n.s.). DPP3 showed the potential to be a COVID-19-specific biomarker. IL-6 might serve as a prognostic marker to assess the extent of pulmonary infiltrates in respiratory patients.
BSC-UPC at EmoSPeech-IberLEF2024: Attention Pooling for Emotion Recognition
Creators: name: Casals-Salvador, Marc
name: Costa, Federico
name: India, Miquel
name: Hernando, Javier
Publisher: name: Zenodo
Year: 2024

description: Speech Emotion Recognition (SER) has emerged as a dynamic field in machine learning with impactful applications in daily life. The IberLEF 2024 hosted a competitive challenge using the Spanish MEACorpus 2023 dataset. This work leverages pre-trained speech and text models with attention pooling for feature extraction, achieving first place over 14 teams with an 86.69% Macro F1-Score.
Performance of the 32 mm Myval transcatheter heart valve for treatment of aortic stenosis in patients with extremely large aortic annuli in real‐world scenario: First global, multicenter experience
Creators: name: Holzamer, Andreas
name: Bedogni, Francesco
name: van Wyk, Pieter
name: Barwad, Parag
name: Protasiewicz, Marcin
name: Ielasi, Alfonso
name: Nombela‐Franco, Luis
name: Seidler, Tim
name: Hilker, Michael
Publisher: name: Universität Regensburg
Year: 2023
Subjects: subject: aortic valve disease, new devices (in general), percutaneous valve therapy
subject: 610 Medizin

description: Background
Extremely large aortic valve anatomy is one of the remaining limitations leading to exclusion of patients for transcatheter aortic valve replacement (TAVR).
Aims
The newly approved Myval 32 mm device is designed for use in aortic annulus areas up to 840 mm2. Here we want to share the initial worldwide experience with the device.
Methods and Results
Retrospective data were collected from 10 patients with aortic stenosis and very large annular anatomy (mean area 765.5 mm2), who underwent implantation with 32 mm Myval transcatheter heart valve at eight centers. Valve Academic Research Consortium-2 device success was achieved in all cases. Mild paravalvular leak was observed in three patients and two patients required new pacemaker implantation. One patient experienced retroperitoneal hemorrhage caused by the contralateral 6 F sheath and required surgical revision. No device-related complications, stroke, or death from any cause occurred within the 30-day follow-up period. In a studied cohort of 2219 consecutive TAVR-screened patients from a central European site, only 0.27% of patients showed larger anatomy than covered by the 32 mm Myval device by instructions for use without off-label use of overexpansion. This rate was significantly higher for the 34 mm Evolut Pro (1.8%) and 29 mm Sapien 3 (2.1%) devices.
Conclusions
The Myval 32 mm prosthesis showed promising initial results in a cohort of patients who previously had to be excluded from TAVR. It is desirable that all future TAVR systems accommodate larger anatomy to allow optimal treatment of all patients.
TARBIYA FANINI O'QITISHDA ZAMONAVIY YONDASHUVLAR
Creators: name: TARBIYA FANINI O'QITISHDA ZAMONAVIY YONDASHUVLAR
Publisher: name: Academic Scientific Research Group
Year: 2024

description: Ushbu maqolada tarbiya tizimidagi zamonaviy yondashuvlar tahlil qilinadi. Tarbiya jarayonida yangi pedagogik metodlar, innovatsion texnologiyalar va o‘quvchilarning shaxsiy rivojlanishini qo‘llab-quvvatlash usullari muhokama qilinadi. Mavzuda tarbiya tizimida o‘zgartirishlarni amalga oshirishda o‘qituvchining roli, shuningdek, axborot texnologiyalari va raqamli platformalarning ahamiyati yoritilgan.
Additional file 5: Figure S5. of Evidence of two distinct functionally specialized fibroblast lineages in breast stroma
Creators: name: Morsing, Mikkel
name: Klitgaard, Marie
name: Jafari, Abbas
name: Villadsen, René
name: Moustapha Kassem
name: Petersen, Ole
name: Rønnov-Jessen, Lone
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Branching morphogenesis reflects activity of luminal progenitors. Primary cultures of purified luminal breast epithelial cells plated at clonal density on confluent feeders of (left column) CD26high or (right column) CD105high fibroblasts stained for MUC1 by immunoperoxidase. Nuclear counterstain is omitted to clearly outline epithelial cells. EpCAMhigh/CD166high/67LRhigh differentiated luminal epithelial cells (CD166high/67LRhigh) remained as single cells upon confrontation with fibroblast feeders (upper panel), while EpCAMhigh/CD166low/67LRlow progenitors (CD166low/67LRlow) responded by undergoing branching morphogenesis with larger structures forming on CD105high fibroblasts (lower panel) (scale bar = 100 μm). (PDF 9484 kb)
Deep Space Navigation for the Martian Moons eXploration mission
Creators: name: Ciccarelli, Edoardo
Publisher: name: University of Surrey
Year: 2024
Subjects: Orbit Determination
Autonomous Navigation
Martian Moons eXploration (MMX)
Aerospace Navigation
Astrodynamics
Astronautics
Orbital Mechanics

description: In the last sixty years of space exploration, only a handful of missions targeted Phobos and Deimos, the two moons of Mars. All of these missions failed, preventing them from successfully achieving their objectives. The planned Mars Moon Exploration mission is the first to be specifically designed to gather samples from Phobos and return them to Earth. At the state of the art, this kind of mission relies on on-ground teams to monitor the spacecraft’s state, gather knowledge of the target body, make decisions and send instructions to perform the manoeuvres needed to approach the target body. In this control loop, navigation is one of the processes that may be automated by exploiting the latest advancements in computer vision, favouring autonomy and reducing the dependence on ground teams. This work aimed at exploring possible solutions to achieve that goal. With the objective of autonomously creating a map of points of interest on the surface of small bodies, a set of novel feature extraction algorithms based on deep learning techniques were integrated into simultaneous localization and mapping algorithms and tested on real and synthetic optical data. The results showed a significant robustness of the proposed deep-features, in tracking the observer motion and mapping the environment, compared to standard feature extraction algorithms. In the context of the MMX mission, it was also investigated the best orbital solutions to maximize the scientific return of the mission. It was shown that flying quasi-periodic orbits around Phobos, instead of the currently planned periodic ones, and integrating optical data from the spacecraft’s camera, can significantly improve the observability of the moon’s gravitational field and distribution of the moments of inertia. To conclude, the feasibility of a dedicated autonomous system to navigate the spacecraft around Phobos, using only spaceborne sensors and computer vision algorithms was demonstrated, highlighting the possible navigation setups and combination of sensors that ensure a safe and reliable navigation of MMX around Phobos.
Additional file 1: Figure S1. of Human mesenchymal stromal/stem cells acquire immunostimulatory capacity upon cross-talk with natural killer cells and might improve the NK cell function of immunocompromised patients
Creators: name: Rongtao Cui
name: Rekasi, Heike
name: Hepner-Schefczyk, Monika
name: Fessmann, Kai
name: Petri, Robert
name: Bruderek, Kirsten
name: Brandau, Sven
name: JĂ¤Ger, Marcus
name: FlohĂŠ, Stefanie
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Computational Biology

description: Expression of specific molecules on MSCs. MSCs were incubated with fluorochrome-labeled antibodies against CD45, CD31, CD34, CD73, CD105, CD29, and CD90, and with the respective isotype control antibodies. Representative histograms show the fluorescence of the isotype (grey shaded area) and the specific antibody (black line). MSC mesenchymal stromal/stem cell (PDF 48Â kb)
KidneyGPS: a user-friendly web application to help prioritize kidney function genes and variants based on evidence from genome-wide association studies
Creators: name: Stanzick, Kira J.
name: Stark, Klaus J.
name: Gorski, Mathias
name: Schödel, Johannes
name: Krüger, René
name: Kronenberg, Florian
name: Warth, Richard
name: Heid, Iris M.
name: Winkler, Thomas W.
Publisher: name: Universität Regensburg
Year: 2023
Subjects: subject: GWAS, Kidney function, Web application, KidneyGPS, Gene prioritization
subject: 610 Medizin

description: Background

Genome-wide association studies (GWAS) have identified hundreds of genetic loci associated with kidney function. By combining these findings with post-GWAS information (e.g., statistical fine-mapping to identify independent association signals and to narrow down signals to causal variants; or different sources of annotation data), new hypotheses regarding physiology and disease aetiology can be obtained. These hypotheses need to be tested in laboratory experiments, for example, to identify new therapeutic targets. For this purpose, the evidence obtained from GWAS and post-GWAS analyses must be processed and presented in a way that they are easily accessible to kidney researchers without specific GWAS expertise.
Main

Here we present KidneyGPS, a user-friendly web-application that combines genetic variant association for estimated glomerular filtration rate (eGFR) from the Chronic Kidney Disease Genetics consortium with annotation of (i) genetic variants with functional or regulatory effects (“SNP-to-gene” mapping), (ii) genes with kidney phenotypes in mice or human (“gene-to-phenotype”), and (iii) drugability of genes (to support re-purposing). KidneyGPS adopts a comprehensive approach summarizing evidence for all 5906 genes in the 424 GWAS loci for eGFR identified previously and the 35,885 variants in the 99% credible sets of 594 independent signals. KidneyGPS enables user-friendly access to the abundance of information by search functions for genes, variants, and regions. KidneyGPS also provides a function (“GPS tab”) to generate lists of genes with specific characteristics thus enabling customizable Gene Prioritisation (GPS). These specific characteristics can be as broad as any gene in the 424 loci with a known kidney phenotype in mice or human; or they can be highly focussed on genes mapping to genetic variants or signals with particularly with high statistical support. KidneyGPS is implemented with RShiny in a modularized fashion to facilitate update of input data (https://kidneygps.ur.de/gps/).
Conclusion

With the focus on kidney function related evidence, KidneyGPS fills a gap between large general platforms for accessing GWAS and post-GWAS results and the specific needs of the kidney research community. This makes KidneyGPS an important platform for kidney researchers to help translate in silico research results into in vitro or in vivo research.
Additional file 4: of Systematic narrative review of decision frameworks to select the appropriate modelling approaches for health economic evaluations
Creators: name: B Tsoi
name: D OâReilly
name: J Jegathisawaran
name: J-E Tarride
name: G Blackhouse
name: R Goeree
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: Science Policy
subject: Computational Biology

description: Copies of existing decision frameworks.
Association between circadian physical activity patterns and mortality in the UK Biobank
Creators: name: Stein, Michael J.
name: Baurecht, Hansjörg
name: Sedlmeier, Anja M.
name: Konzok, Julian
name: Bohmann, Patricia
name: Fontvieille, Emma
name: Peruchet-Noray, Laia
name: Bowden, Jack
name: Friedenreich, Christine M.
name: Fervers, Béatrice
name: Ferrari, Pietro
name: Gunter, Marc J.
name: Freisling, Heinz
name: Leitzmann, Michael F.
name: Viallon, Vivian
name: Weber, Andrea
Publisher: name: Universität Regensburg
Year: 2023
Subjects: subject: Physical activity patterns, All-cause mortality, UK Biobank, Raw accelerometry
subject: 610 Medizin

description: Background The benefit of physical activity (PA) for increasing longevity is well-established, however, the impact
of diurnal timing of PA on mortality remains poorly understood. We aimed to derive circadian PA patterns and investigate
their associations with all-cause mortality.
Methods We used 24 h PA time series from 96,351 UK Biobank participants aged between 42 and 79 years at accelerometry
in 2013–2015. Functional principal component analysis (fPCA) was applied to obtain circadian PA patterns.
Using multivariable Cox proportional hazard models, we related the loading scores of these fPCs to estimate risk
of mortality.
Results During 6.9 years of follow-up, 2,850 deaths occurred. Four distinct fPCs accounted for 96% of the variation
of the accelerometry data. Using a loading score of zero (i.e., average overall PA during the day) as the reference,
a fPC1 score of + 2 (high overall PA) was inversely associated with mortality (Hazard ratio, HR = 0.91; 95% CI: 0.84–0.99),
whereas a score of -2 (low overall PA) was associated with higher mortality (1.69; 95% CI: 1.57–1.81; p for non-linearity
< 0.001). Significant inverse linear associations with mortality were observed for engaging in midday PA instead
of early and late PA (fPC3) (HR for a 1-unit increase 0.88; 95% CI: 0.83–0.93). In contrast, midday and nocturnal PA
instead of early and evening PA (fPC4) were positively associated with mortality (HR for a 1-unit increase 1.16; 95% CI:
1.08–1.25).
Conclusion Our results suggest that it is less important during which daytime hours one is active but rather,
to engage in some level of elevated PA for longevity.
title: Zuwanderung und Arbeitsmarkt
title: Eine Analyse für Deutschland und die Bundesländer
titleType: Subtitle
Creators: name: Kubis, Alexander
name: Schneider, Lutz
Publisher: name: Bertelsmann Stiftung
publisherIdentifier: https://ror.org/01wj9hk44
publisherIdentifierScheme: ROR
Year: 2024
Subjects: Migration
Einwanderung
Arbeitskräftebedarf
Erwerbspersonenpotenzial
Arbeitsmarkt

description: Ohne Zuwanderung sinkt die Zahl der Arbeitskräfte in Deutschland bis 2040 um 10 Prozent, so eines der zentralen Ergebnisse der neuen Studie. Die Studienautoren Alexander Kubis vom Institut für Arbeitsmarkt- und Berufsforschung (IAB) und Lutz Schneider von der Hochschule Coburg zeigen in ihrer Projektion, dass die Zahl der Arbeitskräfte von derzeit 46,4 Millionen ohne zusätzliche Einwanderer:innen bis 2040 auf 41,9 Millionen und bis 2060 auf 35,1 Millionen zurückgehen würde.

Um den Bedarf des zukünftigen Arbeitsmarkts zu decken und das Erwerbspersonenpotenzial nicht einbrechen zu lassen, braucht es bis 2040 jährlich rund 288.000 internationale Arbeitskräfte. Grundlage für diese Berechnung ist die aktuelle Projektion des Arbeitskräftebedarfs bis 2040 durch das IAB und das Bundesinstitut für Berufsbildung (BIBB).
Additional file 3: of Systematic narrative review of decision frameworks to select the appropriate modelling approaches for health economic evaluations
Creators: name: B Tsoi
name: D OâReilly
name: J Jegathisawaran
name: J-E Tarride
name: G Blackhouse
name: R Goeree
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: Science Policy
subject: Computational Biology

description: Level I screening form.
Mass-Editing Memory with Attention in Transformers A cross lingual exploration of knowledge
Creators: name: Tamayo, Daniel
name: Gonzalez-Agirre, Aitor
name: Hernando, Javier
name: Villegas, Marta
Publisher: name: Zenodo
Year: 2024

description: Recent research has explored methods for updating and modifying factual knowledge in large language models, often focusing on specific multi-layer perceptron blocks. This study expands on this work by examining the effectiveness of existing knowledge editing methods across languages and delving into the role of attention mechanisms in this process. Drawing from the insights gained, we propose MassEditing Memory with Attention in Transformers (MEMAT), a method that achieves significant improvements in all metrics while requiring minimal parameter modifications.
Additional file 1: Table S1. of Selective sweeps versus introgression - population genetic dynamics of the murine leukemia virus receptor Xpr1 in wild populations of the house mouse (Mus musculus)
Creators: name: Hasenkamp, Natascha
name: Solomon, Terry
name: Tautz, Diethard
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Primers for microsatellite loci. Table S2: PCR and sequencing primers. Table S3: Allele frequencies of microsatellite loci for all populations. Figure S1: SNP haplotype tracks from the SNP survey in Staubach et al. [48]). Figure S2: Genomic overview of Xpr1 on chromosome 1. Figure S3: Alignment of Xpr1 haplotypes from the literature and the present study. Figure S4: Alignment of viral RBD haplotypes from the population survey. Xpr1 haplotype sequences from population survey. RBD Sequences of P-MLV variants from the population samples. RBD Sequences of P-MLV variants from the reciprocal crossing experiment (DOCX 1116 kb)
Additional file 2: Figure SI1. of Activating clinical trials: a process improvement approach
Creators: name: Martinez, Diego
name: Tsalatsanis, Athanasios
name: Yalcin, Ali
name: Zayas-Castro, José
name: Djulbegovic, Benjamin
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Biotechnology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Computational Biology

description: Simulation logic for the administrative process associated with industry-sponsored clinical trial activation. Abbreviations: CDA/NDA, confidential disclosure agreement or non-disclosure agreement; CT, clinical trial; DSR, USF’s Division of Sponsored Research; PI, principal investigator. Figure SI2. Administrative procedure involved in the opening of clinical trials managed by the Office of Clinical Research at the University of South Florida. At the level of granularity, the process for activating an industry-sponsored clinical trial at USF comprises 30 steps, 11 decisions, 4 loops, and 8 participants. Abbreviations: CDA/NDA, confidential disclosure agreement or non-disclosure agreement; CTA, clinical trial agreement; OCR, USF’s Office of Clinical Research; P&L, USF’s Patents and Licensing; PI, principal investigator; SRA, OCR’s Senior Research Assistant; WIRB, Western Institutional Review Board. Figure SI3. Analysis of system capacity. Increasing the number of clinical trials arriving at the Office of Clinical Research. Slight increase will cause statistically significant delays to clinical trial activation, increase idle time, and queue lengths. Abbreviations: CTs, clinical trials. Figure SI4. Analysis of key participants’ capacity under increased workload. Effect of personnel addition under an increased demand scenario of 28 clinical trials per month average. At least two new employees must be assigned to OCR in order to maintain the baseline system performance. Abbreviations: CTs, clinical trials. *Baseline scenario. Figure SI5. Analysis of other participants’ capacity. Reducing response time from participants outside USF’s Office of Clinical Research. Reducing response time would not have a statistically significant (95 % confidence) effect on average activation time, idle time, and queue length. Figure SI6. T test comparing the mean duration of Contract Negotiation with and without data of those clinical trials still in process. Figure SI7. T test comparing the mean duration of Budget Negotiation with and without data of those clinical trials still in process. (DOCX 3073 kb)
Presentations of the 14th November 2024 after lunch session of the ICODSIP conference
Creators: name: Universidad de Alcalá
Publisher: name: Zenodo
Year: 2024
Subjects: digital skills
ICT professionalism
women in ICT

description: Presentations of all the slots (including panel) of the 14th November 2024 after lunch session of the ICODSIP conference.
Additional file 1: Table S1. of Match injuries in amateur Rugby Union: a prospective cohort study - FICS Biennial Symposium Second Prize Research Award
Creators: name: Swain, Michael
name: Lystad, Reidar
name: Henschke, Nicholas
name: Maher, Christopher
name: Kamper, Steven
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: SF-36v2 health domain scores: norm-based scores means and standard deviations. Table S2. SF-36v2 health domain scores: 0-100 means and standard deviations. (DOCX 21 kb)
Additional file 1: of Cost-effectiveness of screening for ovarian cancer amongst postmenopausal women: a model-based economic evaluation
Creators: name: Kearns, Ben
name: Chilcott, Jim
name: Whyte, Sophie
name: Preston, Louise
name: Sadler, Susi
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biotechnology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy
subject: 60506 Virology
subject: FOS: Biological sciences
subject: Computational Biology

description: Section A: Derivation of utility values for the health economic model. Section B: Estimates of resource use and costs for the health economic model. Section C: Derivation of annual transition probabilities for ovarian cancer mortality. Section D: Sensitivity analyses; definitions and results. Section E: Ovarian Cancer Searches and Results. (DOCX 66 kb)
Additional file 1: of Systematic narrative review of decision frameworks to select the appropriate modelling approaches for health economic evaluations
Creators: name: B Tsoi
name: D OâReilly
name: J Jegathisawaran
name: J-E Tarride
name: G Blackhouse
name: R Goeree
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: Science Policy
subject: Computational Biology

description: Search strategy.
Vegetarian diets and global disparities in calcium intake in pregnant women: A systematic review and meta‐analysis
Creators: name: Kasper, Marina
name: Bickelmann, Franziska
name: Leitzmann, Michael
name: Jochem, Carmen
Publisher: name: Universität Regensburg
Year: 2023
Subjects: subject: calcium, dietary minerals, maternal nutrition, pregnancy, vegetarian diet
subject: 610 Medizin

description: Background: Vegetarian diets are currently experiencing increasing popularity
and are also becoming more common in pregnant women. Calcium plays a crucial
role for skeletal health and for physiologic processes during pregnancy for the
mother and foetus.
Aims: Our study aimed to evaluate calcium intake of vegetarian versus
nonvegetarian expectant mothers.
Materials and Methods: We searched PubMed and retrieved seven studies (six
prospective cohort and one cross‐sectional) for inclusion in our random‐effects
meta‐analysis. We calculated standardised mean differences (SMD).
Results: Results showed a significantly higher calcium intake in vegetarian than
nonvegetarian pregnant women [SMD: 0.25; 95% confidence interval (CI):
0.14, 0.36].
Discussion: Most studies showed that the recommendations for calcium intake
during pregnancy (ranging from 700 to 1200 mg/d) were met. Both vegetarian and
nonvegetarian pregnant women showed higher calcium intakes in Europe and
North America than in Asia. Serum calcium levels did not differ between
vegetarian and nonvegetarian pregnant women (SMD: − 0.15; 95% CI: −0.42,
0.11), confirming that the tight regulation of calcium metabolism is not affected by
dietary calcium intake.
Conclusion: To prevent inadequate calcium intake potentially associated with
adverse gestational outcomes, we recommend adherence to existing recommendations
by means of calcium supplementation (1.5–2 g/d), food fortification
strategies, or behavioural interventions.
MOESM1 of Molecular adaptation of Lactobacillus plantarum WCFS1 to gallic acid revealed by genome-scale transcriptomic signature and physiological analysis
Creators: name: Reverón, Inés
name: Rivas, Blanca De Las
name: Matesanz, Ruth
name: Muñoz, Rosario
name: Felipe, Félix López De
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Table S1. Lactobacillus plantarum WCFS1 genes with differential expression in presence of gallic acid.
Verfahrensdokumentation für TEI: Training Evaluations Inventar
Creators: name: Ritzmann, S.
name: Hagemann, V.
name: Kluge, A.
Publisher: name: ZPID (Leibniz Institute for Psychology) – Open Test Archive
Year: 2020
Subjects: subject: Evaluation
subject: Coaching
subject: Wissenstransfer
subject: Personalschulung
subject: Organisationen
subject: Therapeuten in Ausbildung
subject: Knowledge Transfer
subject: Personnel Training
subject: Organizations
subject: Therapist Trainees
subject: 150

description: Das Trainings Evaluations Inventars dient der Evaluation eines laufenden oder bereits abgeschlossenen Trainings hinsichtlich theoretisch- und empirisch fundierter Trainingsoutcome- und Trainingsdesign-Dimensionen. Es umfasst insgesamt 45 Items auf den Levels Trainingsoutcomes (Subjektiver Spaß, Wahrgenommene Nützlichkeit, Wahrgenommene Schwierigkeit, Subjektiver Wissenszuwachs, Einstellung gegenüber dem Training) und Trainingsdesign (Problembasiertes Lernen, Aktivierung (von Vorwissen), Demonstration, Anwendung, Integration). Die Dimensionen der Trainingsoutcomes beruhen auf dem hierarchischen Modell der Trainingsergebnisse von Kirkpatrick (1998). Reliabilität: Die interne Konsistenz liegt bei Cronbachs Alpha >= .73 (eine Ausnahme: Alpha = .66). Validität: Diskriminante, konvergente und Kriteriumsvalidität wurden überprüft.
description: The Training Evaluation Inventory is used to evaluate an ongoing or already completed training with regard to theoretically and empirically based training outcome and training design dimensions. It comprises a total of 45 items at the levels of training outcomes (Subjective Fun, Perceived usefulness, Perceived Difficulty, Subjective Knowledge Growth, Attitude towards Training) and training design (Problem-Based Learning, Activation (of prior knowledge), Demonstration, Application, Integration). The dimensions of training outcomes are based on the hierarchical model of training outcomes by Kirkpatrick (1998). Reliability: The internal consistency is at Cronbach's alpha >= .73 (one exception: alpha = .66) Validity: Discriminant, convergent and criterion validity were checked.
Additional file 1: of The mitochondrial genome of the chimpanzee louse, Pediculus schaeffi: insights into the process of mitochondrial genome fragmentation in the blood-sucking lice of great apes
Creators: name: Herd, Kate
name: Barker, Stephen
name: Renfu Shao
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Primers used to amplify and sequence the mitochondrial genome of the chimpanzee louse, Pediculus schaeffi . (DOC 101Â kb)
MOESM2 of Serum bicarbonate concentration and the risk of cardiovascular disease and death in type 2 diabetes: the Fremantle Diabetes Study
Creators: name: S. Paul Chubb
name: Davis, Wendy
name: Peters, Kirsten
name: Davis, Timothy
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: 60506 Virology
subject: Computational Biology

description: Additional file 2: TableÂ S4. Most parsimonious Cox proportional hazards models (excluding serum bicarbonate) of all-cause mortality, incident coronary heart disease (CHD) and incident heart failure (HF) with age as time scale in FDS patients.
Additional file 2: of Detection, prevalence, and transmission of avian hematozoa in waterfowl at the Arctic/sub-Arctic interface: co-infections, viral interactions, and sources of variation
Creators: name: Brandt Meixell
name: Arnold, Todd
name: Lindberg, Mark
name: Smith, Matthew
name: Runstadler, Jonathan
name: Ramey, Andrew
Publisher: name: Figshare
Year: 2016
Subjects: subject: Molecular Biology
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: This supporting file contains estimates of Leucocytozoon prevalence relative to co-infection with Haemoproteus (Table S13), estimated Haemoproteus prevalence relative to co-infection with Leucocytozoon (Table S14), estimated Haemoproteus prevalence relative to body condition (Table S15), and estimated Leucocytozoon prevalence relative to body condition (Table S16). (PDF 66Â kb)
System reliability analysis of bedrock-soil layer slopes subject to seismic action based on the upper bound limit analysis method
Creators: name: Yu, Qiangshan
name: Zhang, Yingbin
name: Li, Dejian
name: Chen, Qiang
name: Lin, Lirong
name: Zhang, Shihao
name: Jia, Wentao
Publisher: name: Taylor & Francis
Year: 2024
Subjects: Space Science
Physical Sciences not elsewhere classified
Medicine
Biological Sciences not elsewhere classified
Computational Biology

description: Bedrock-soil layer slopes (BSLSs) are widely distributed in nature. The existence of the interface between bedrock and soil layer (IBSL) affects the failure modes of the BSLSs, and the seismic action makes the failure modes more complex. In order to accurately evaluate the safety and its corresponding main failure modes of BSLSs under seismic action, a system reliability method combined with the upper bound limit analysis method and Monte Carlo simulation (MCS) is proposed. Four types of failure modes and their corresponding factors of safety (Fs) were calculated by MATLAB program coding and validated with case in existing literature. The results show that overburden layer soil’s strength, the IBSL’s strength and geometric characteristic, and seismic action have significant effects on BSLSs’ system reliability, failure modes and failure ranges. In addition, as the cohesion of the inclination angle of the IBSL and the horizontal seismic action increase, the failure range of the BSLS gradually approaches the IBSL, which means that the damage range becomes larger. However, with the increase of overburden layer soil’s friction angle, IBSL’s depth and strength, and vertical seismic actions, the failure range gradually approaches the surface of the BSLS, which means that the failure range becomes smaller.
Additional file 4: of Mitochondrial group I and group II introns in the sponge orders Agelasida and Axinellida
Creators: name: DorothĂŠe Huchon
name: Szitenberg, Amir
name: Shefer, Sigal
name: Ilan, Micha
name: Feldstein, Tamar
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: PCR conditions. (DOCX 13 kb)
Additional file 7: of Molecular and functional evolution of the fungal diterpene synthase genes
Creators: name: Fischer, Marc
name: Rustenhloz, Camille
name: VĂŠronique Leh-Louis
name: PerriĂ¨Re, Guy
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Best BLAST search performed on the genes involved in the putative R. rufulum and G. lozoyensis gene cluster. (DOCX 11 kb)
MOESM1 of Sexual crossing of thermophilic fungus Myceliophthora heterothallica improved enzymatic degradation of sugar beet pulp
Creators: name: Aguilar-Pontes, Maria
name: Miaomiao Zhou
name: Horst, Sjors Van Der
name: Theelen, Bart
name: Vries, Ronald De
name: Brink, Joost Van Den
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Additional file 1. Pdf file with three additional figures S1, S2, and S3. Figure S1 shows the saccharification activities against sugar beet pulp of 70 progenies and their M. heterothallica parents CBS 203.75 and CBS 663.74. The activities were measured using culture filtrates of a three-day-old culture on sugar beet pulp medium. Figure S2 shows alignment of the protein sequences of Axe1 from M. thermophila and M. heterothallica. Figure S3 shows temperature and pH profiles of the de-acetylating activity of CE5-CBM1 enzyme Axe1 of M. thermophila C1.
Additional file 2: of Effects of a transitional palliative care model on patients with end-stage heart failure: study protocol for a randomized controlled trial
Creators: name: Ng, Alina
name: Wong, Frances
name: Lee, Paul
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: Training program for nurse case managers. (DOC 45 kb)
Triassolitophlebia Sinitshenkova & Aristov, gen. nov.
Creators: name: Sinitshenkova, Nina D.
name: Aristov, Daniil S.
name: Wegierek, Piotr
name: Żyła, Dagmara
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Ephemeroptera
Litophlebiidae
Triassolitophlebia

description: Genus Triassolitophlebia Sinitshenkova & Aristov, gen. nov.
Type species. Triassolitophlebia palegica Sinitshenkova & Aristov, sp. nov., by monotypy.
Diagnosis. The forewing is 3.2 times as long as wide, the apex widely rounded. SC does not reach the wing apex. In the RS system, there are not fewer than five longitudinal veins, and RS is not fused with MA stem at the wing base. MA branches in the basal half of the wing, and MP divides at the very wing base. CuA is long and reaches the wing margin distally of MA branching; CuP is long and reaches the wing margin in the basal third of the wing.
Comparison. The new genus differs significantly from Litophlebia Riek, 1976 by the long CuA and CuP and by a shorter SC. In the original description of Litophlebia ”RS appearing to arise as a forward branch of MA, in fact on the photo (Riek 1976: Fig. 3) it can be distinctly seen that the basal part of RS stem comes closely to the basal part of MA stem and runs near to it for some distance. Perhaps they are not fused, because at the very wing base the RS base is seen as a fine separate vein. For the Ephemeroptera the separate arising of RS from the wing base is characteristic. Some features of the new mayfly venation have a formal similarity to that of Triassodotes vogesiacus Sinitshenkova & Papier, 2005 (Sinitshenkova et al. 2005) and Tintorina meridensis Krzeminski & Lombardo, 2001 of the family Tintorinidae (Krzeminski & Lombardo 2001). These features include the short SC and MP branching at the wing base. These are the proper characters that clearly distinguish the Triassic Triassodotes from the Permian Misthodotes Tshernova, 1965 (Tshernova 1965; Kinzelbach & Lutz 1984). In spite of this similarity, the new mayfly could not be referred to the Misthodotidae because of the sharp corrugation that is not characteristic for this family but rather typical for the Litophlebiidae. The representatives of the Misthodotidae have wider wings; they are flattened to some extent and never have a sharp corrugation. This feature is also the main difference between the Litophlebiidae and the Tintorinidae. Moreover, the wings of the Tintorinidae are longer and narrower; they are 3.7 times as long as wide.
Etymology. The name is a combination of the period – Triassic and Litophlebia – the type genus of the family. Gender: feminine.
description: Published as part of Sinitshenkova, Nina D., Aristov, Daniil S., Wegierek, Piotr & Żyła, Dagmara, 2015, New mayfly genera from the Middle Triassic of Poland and their evolutionary and paleogeographic implications (Ephemerida: Litophlebiidae, Vogesonymphidae), pp. 281-288 in Zootaxa 3949 (2) on page 283, DOI: 10.11646/zootaxa.3949.2.8, http://zenodo.org/record/235827
Additional file 4: of Molecular and functional evolution of the fungal diterpene synthase genes
Creators: name: Fischer, Marc
name: Rustenhloz, Camille
name: VĂŠronique Leh-Louis
name: PerriĂ¨Re, Guy
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Developmental Biology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Best BLAST hits for the genes involved in the putative A. niger and T. reesei gene cluster [73]. (DOCX 13 kb)
Additional file 5: of Contrasting biological potency of particulate matter collected at sites impacted by distinct industrial sources
Creators: name: Thomson, Errol
name: Breznan, Dalibor
name: Karthikeyan, Subramanian
name: MacKinnon-Roy, Christine
name: Vuong, Ngoc
name: Dabek-Zlotorzynska, Ewa
name: Celo, Valbona
name: Charland, Jean-Pierre
name: Kumarathasan, Prem
name: Brook, Jeffrey
name: Vincent, Renaud
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Ecology
subject: Developmental Biology
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Cytotoxic responses of J774A.1 cells to 24 h exposure to size-fractionated particulate matter collected in the vicinity of industrial sites according to the resazurin reduction assay. Metabolic reduction of non-fluorescent resazurin in J774A.1 cells exposed for 24 h to size-fractionated and standard reference particles (left side) and extracts from corresponding field blank filters that were transported to each site but remained unexposed to ambient air (right side). Values are presented as average fold-effect (FE) over control ± standard error (n = 3 independent experiments). HB, Hamilton Beach steel mill; MA, Montréal petrochemical refinery; MC, Montréal copper smelter; SR, Sarnia petrochemical refinery; SW, Shawinigan aluminum smelter. Size-fractionated and standard reference particles. Three-way ANOVA (Size-fractionated particles): Site x Dose (p = 0.002) and Size x Dose (p
Triassolitophlebia palegica Sinitshenkova & Aristov, sp. nov.
Creators: name: Sinitshenkova, Nina D.
name: Aristov, Daniil S.
name: Wegierek, Piotr
name: Żyła, Dagmara
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Ephemeroptera
Litophlebiidae
Triassolitophlebia
Triassolitophlebia palegica

description: Triassolitophlebia palegica Sinitshenkova & Aristov, sp. nov.
Figure 1
Type. Holotype no. ZPAL V.44.I/308, Institute of Paleobiology, Polish Academy of Sciences, positive imprint of the forewing.
Type locality and horizon. Pałęgi, Holy Cross Mountains (Poland), Olenekian-Anisian, Middle Triassic.
Diagnosis. Same as for the genus.
Description. Forewing length: 9.06; maximum width: 2.80. First branching of RS in basal third of wing; MA divided distally to branching of RS and clearly basally to wing middle. MP branches almost straight; CuA and CuP clearly S-shaped; A1 relatively long. Crossveins straight and dense, with cells between them almost square.
Remarks. It is possible to recognize five longitudinal veins in the RS system in the forewing. The preservation of the wing apex is poor, and so the existence of two more veins, even though they are not visible, cannot be ruled out, judging by the intervals between the visible veins. The fore margin of the wing is not completely preserved, and so there is only the SC fragment reaching the wing middle. On the wing apex, two convex veins can be seen clearly –C and R – and no other concave vein which could be SC can be seen between them. Undoubtedly, SC does not reach the wing apex, which means that this vein is short, in any case shorter than that of Litophlebia. The crossveins are drawn only at the wing base between CuP and A.
Etymology. The name derives from the Pałęgi site.
description: Published as part of Sinitshenkova, Nina D., Aristov, Daniil S., Wegierek, Piotr & Żyła, Dagmara, 2015, New mayfly genera from the Middle Triassic of Poland and their evolutionary and paleogeographic implications (Ephemerida: Litophlebiidae, Vogesonymphidae), pp. 281-288 in Zootaxa 3949 (2) on page 283, DOI: 10.11646/zootaxa.3949.2.8, http://zenodo.org/record/235827