cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
On the Geometry of the High-Velocity Ejecta of the Peculiar Type Ia Supernova 2000cx
Creators: name: Thomas, R. C.
name: Branch, David
name: Baron, E.
name: Nomoto, Ken'ichi
name: Li, Weidong
name: Filippenko, Alexei V.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: High-velocity features in Type Ia supernova spectra provide a way to probe the outer layers of these explosions. The maximum-light spectra of the unique Type Ia supernova 2000cx exhibit interesting Ca II features with high-velocity components. The infrared triplet absorption is quadruply notched, while the H&K absorption is wide and flat. Stimulated by a three-dimensional interpretation of similar Ca II features in another Type Ia supernova (SN 2001el, Kasen et al. 2003), we present alternative spherically symmetric and three-dimensional ejecta models to fit the high-velocity (v > 16,000 km/s) Ca II features of SN 2000cx. We also present simple estimates of the high-velocity ejecta mass for a few trial compositions and discuss their implications for explosion modelling.
description: 33 pages total, 13 figures, accepted by ApJ
UVC- and UVC/H2O2-Driven nonribosomal peptide antibiotics degradation: application to zinc bacitracin as a complex emerging contaminant
Creators: name: Metolina, Patrícia
name: Lourenço, Felipe Rebello
name: Teixeira, Antonio Carlos Silva Costa
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 60506 Virology

description: Zinc bacitracin (Zn-Bc) belongs to the group of nonribosomal peptide antibiotics (NRPA), comprising a mixture of non-biodegradable congeners characterized by complex structures containing cyclic, polycyclic, and branched chains. However, reports on the use of AOPs for the degradation of NRPA are non-existent. In this context, the present work investigated the photodegradation of Zn-Bc in aqueous solution by direct photolysis and the UVC/H2O2 process. The effects of the specific UVC photon emission rate and initial H2O2 concentration were studied following a Doehlert-design response surface approach. The results showed that all congeners photolyzed at the highest UVC doses in the absence of hydrogen peroxide, with a calculated quantum yield of 0.0141 mol Zn-Bc mol photons−1. However, no TOC removal was observed after 120 minutes of irradiation, suggesting the disruption of the peptide bonds in the antibiotic molecules without significant changes in the amino acid residues. The addition of H2O2 substantially accelerated Zn-Bc photodegradation, resulting in a remarkable removal of up to 71% of TOC. Most importantly, the antimicrobial activity against Staphylococcus aureus could be completely removed by both treatments. These findings point out that the UVC/H2O2 process can be straightly engineered for the treatment of metalloantibiotics-containing wastewater in pharmaceutical facilities.
Additional file 3 of Skeletal muscle gene expression in response to resistance exercise: sex specific regulation
Creators: name: Dongmei Liu
name: Sartor, Maureen A
name: Nader, Gustavo A
name: Gutmann, Laurie
name: Treutelaar, Mary K
name: Pistilli, Emidio E
name: IglayReger, Heidi B
name: Burant, Charles F
name: Hoffman, Eric P
name: Gordon, Paul M
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3: Table S3: Enriched biological concepts for up- and down-regulated genes in male biceps 24 h post-RE. (DOCX 24 KB)
A Toolkit to Assist Child and Adolescent Providers in Assessing Problematic Internet Use and Cyberbullying in an Outpatient Psychiatry Clinic
Creators: name: McGrath, Collin J
Publisher: name: University of Massachusetts Amherst
Year: 2021

Social media has become a transformational part of daily life in the United States. Currently, there are few assessment tools and no standard of care when it comes to assessing internet use, social media, and cyberbullying among child and adolescent patients. Problematic internet use (PIU) and cyberbullying can both significantly and negatively impact the mental health of children and adolescents. The purpose of this project is to evaluate the effectiveness of an online toolkit implementation for a Southwest Florida (SWFL) outpatient psychiatry office.  A pre/post one group design was used. A convenience sample of 13 healthcare providers was recruited from one outpatient clinic in the Eastern United States. Participated healthcare providers’ perceptions of cyberbullying were assessed before and after an educational presentation. The survey was used to assess changes in providers’ knowledge, confidence, and awareness in the topic and willingness to use tested scales. Provider’s self-reported knowledge, comfort and awareness regarding problematic internet use and cyberbullying increased significantly from pre to post-survey. A Wilcoxon signed ranks test indicated that post-intervention mean score ranks were statistically significantly higher than pre-intervention mean score ranks (Z=-2.201, p 0.028). The mean difference from the pretest increased from 4.63 to 5.85. Providers who completed the presentation of this toolkit reported they agreed (N=3) or strongly agreed (N=3) that the education was a benefit to them. The educational presentation and access to provider toolkit improved the knowledge, comfort, and awareness of mental health providers regarding cyberbullying and problematic internet use.
Effect of annealing on the structural, topographical and optical properties of sol gel derived ZnO and AZO thin films
Creators: name: Sengupta, Joydip
name: Sahoo, R. K.
name: Mukherjee, C. D.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Applied Physics (physics.app-ph)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: A comparative study of the physical properties of undoped Zinc Oxide (ZnO) and Al doped Zinc Oxide (AZO) thin films were performed as a function of annealing temperature. The structural properties were analyzed using X-ray diffraction and the recorded patterns indicated that the crystallinity of the films always enhanced with increasing annealing temperature while it degrades with Al doping. The topographical modification of the films due to heat treatment was examined by atomic force microscopy which revealed that annealing roughened the surface of all the films; however the AZO films always exhibited smoother morphology than ZnO. Study of the optical properties by UV-Visible spectrophotometer demonstrated that the transmittance was gradually diminished with the rise in annealing temperature. In addition, a notable increase in the optical band gap was also observed for the AZO films.
description: AZO thin film; Sol gel preparation; Annealing; X ray diffraction; Atomic force microscopy;Optical properties. arXiv admin note: text overlap with arXiv:1908.05886
Spin diffusion in geometrically frustrated Heisenberg antiferromagnets
Creators: name: Huber, D. L.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We investigate spin diffusion in geometrically frustrated Heisenberg antiferromagnets. It is found that the diffusion constant gradually increases from its high temperature limit as the temperature approaches the peak temperature of the susceptibility. Below the peak, the exponential decrease in the susceptibility leads to a rapid increase in the rate of spin diffusion. Detailed results are presented for the pyrochlore lattice with nearest-neighbor interactions.
description: To appear in J. Phys.: Condensed Matter
Exclusive two $ρ^0$-mesons production in $γγ^*$ collision
Creators: name: Anikin, I. V.
name: Pire, B.
name: Teryaev, O. V.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We give a theoretical description of the L3 Collaboration data on the cross-section of the exclusive two $ρ$-mesons production in $γγ^*$ collision with large photon virtuality. These data prove the scaling behaviour of the leading twist generalized distribution amplitude of vector mesons. They thus prove the relevance of a partonic description of the exclusive process $γγ^*\toρ^0ρ^0$ at $Q^2\geq 1.2 {\rm GeV^2}$ and $W\leq 3.0 {\rm GeV}.$
description: 6 pages, 1 eps figure
Additional file 5 of Skeletal muscle gene expression in response to resistance exercise: sex specific regulation
Creators: name: Dongmei Liu
name: Sartor, Maureen A
name: Nader, Gustavo A
name: Gutmann, Laurie
name: Treutelaar, Mary K
name: Pistilli, Emidio E
name: IglayReger, Heidi B
name: Burant, Charles F
name: Hoffman, Eric P
name: Gordon, Paul M
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 5: Table S5: Enriched biological concepts for up- and down-regulated genes in female biceps 24 h post-RE. (DOCX 17 KB)
Vortex in Maxwell-Chern-Simons models coupled to external backgrounds
Creators: name: Chandelier, F.
name: Georgelin, Y.
name: Lassaut, M.
name: Masson, T.
name: Wallet, J. C.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Other Condensed Matter (cond-mat.other)
subject: FOS: Physical sciences

description: We consider Maxwell-Chern-Simons models involving different non-minimal coupling terms to a non relativistic massive scalar and further coupled to an external uniform background charge. We study how these models can be constrained to support static radially symmetric vortex configurations saturating the lower bound for the energy. Models involving Zeeman-type coupling support such vortices provided the potential has a "symmetry breaking" form and a relation between parameters holds. In models where minimal coupling is supplemented by magnetic and electric field dependant coupling terms, non trivial vortex configurations minimizing the energy occur only when a non linear potential is introduced. The corresponding vortices are studied numerically
description: LaTeX file, 2 figures
MOESM1 of Does cranberry extract reduce antibiotic use for symptoms of acute uncomplicated urinary tract infections (CUTI)? Protocol for a feasibility study
Creators: name: Oghenekome Gbinigie
name: Allen, Julie
name: Boylan, Anne-Marie
name: Hay, Alastair
name: Heneghan, Carl
name: Moore, Michael
name: Williams, Nicola
name: Butler, Chris
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 1. Participant Information Leaflet (CUTI trial).
Additional file 4 of Skeletal muscle gene expression in response to resistance exercise: sex specific regulation
Creators: name: Dongmei Liu
name: Sartor, Maureen A
name: Nader, Gustavo A
name: Gutmann, Laurie
name: Treutelaar, Mary K
name: Pistilli, Emidio E
name: IglayReger, Heidi B
name: Burant, Charles F
name: Hoffman, Eric P
name: Gordon, Paul M
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 4: Table S4: Enriched biological concepts for up- and down-regulated genes in female biceps 4 h post-RE. (DOCX 40 KB)
Additional file 1 of DNA methylation repels binding of hypoxia-inducible transcription factors to maintain tumor immunotolerance
Creators: name: D’Anna, Flora
name: Van Dyck, Laurien
name: Xiong, Jieyi
name: Zhao, Hui
name: Berrens, Rebecca V.
name: Qian, Junbin
name: Bieniasz-Krzywiec, Pawel
name: Chandra, Vikas
name: Schoonjans, Luc
name: Matthews, Jason
name: De Smedt, Julie
name: Minnoye, Liesbeth
name: Amorim, Ricardo
name: Khorasanizadeh, Sepideh
name: Yu, Qian
name: Zhao, Liyun
name: De Borre, Marie
name: Savvides, Savvas N.
name: Simon, M. Celeste
name: Carmeliet, Peter
name: Reik, Wolf
name: Rastinejad, Fraydoon
name: Mazzone, Massimiliano
name: Thienpont, Bernard
name: Lambrechts, Diether
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 1: Fig. S1. HIF1β peaks in MCF7 cells under 0.5% O2. Fig. S2. Expression of hypoxia genes and cancer testis antigens. Fig. S3. Cell-type-specific HIF1β binding. Fig. S4. DNA methylation directly repels HIF1β binding. Fig. S5. Quality control of the ChIP-seq replicates. Fig. S6. HIF binds retrotransposons in demethylated genomes. Fig. S7. Examples of cryptic transcripts upregulated by HIF1β. Fig. S8. Cryptic transcript expression in TCGA tumors. Fig. S9. Aza treatment increases immunogenicity.
Biotransformed Antioxidant isoflavone extracts present high-capacity to attenuate the in vitro formation of advanced glycation end products
Creators: name: Vanize M. Genova
name: Annayara C. F. Fernandes
name: Érika Hiramatsu
name: Queirós, Lívia D.
name: Macedo, Juliana A.
name: Macedo, Gabriela A.
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer

description: Advanced glycation end products (AGEs) are toxic with a high capacity to cause damages to health, mainly associated with diabetes complications. In this study, soybean isoflavone extracts were subjected to different biotransformation processes: Lactobacilli fermentation, Enzymatic and Enzymatic followed by fermentation, in order to improve their antioxidant capacity and bioactive isoflavone content. The effects of the biotransformation processes on total phenolic content, antioxidant activities, and isoflavone profile were evaluated. Analyses of antiglycation activity of the isoflavones extracts were evaluated by glycation models in vitro. The results showed that all bioprocesses increased the aglycone content, as well as the antioxidant capacity by about 2.5 times using ORAC and 1.6 times using FRAP assays. The results were superior for enzymatic biotransformation followed by fermentation. All processes showed about 24,33% to 57,33% of anti-glycationt capacity, indicating that biotransformation improved the bioactivity of isoflavones extracts for glycation inhibitory activity, as well as the associated e antioxidant capacity.
Shadow of charged black holes in Gauss-Bonnet gravity
Creators: name: Das, Anish
name: Saha, Ashis
name: Gangopadhyay, Sunandan
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In this paper, we investigate the effect of higher curvature corrections from Gauss-Bonnet gravity on the shadow of charged black holes in both $AdS$ and Minkowski spacetimes. The null geodesic equations are computed in $d=5$ spacetime dimensions by using the directions of symmetries and Hamilton-Jacobi equation. With the null geodesics in hand, we then proceed to evaluate the celestial coordinates ($α, β$) and the radius $R_s$ of the black hole shadow and represent it graphically. The effects of charge $Q$ of the black hole and the Gauss-Bonnet parameter $γ$ on the radius of the shadow $R_s$ is studied in detail. It is observed that the Gauss-Bonnet parameter $γ$ affects the radius of the black hole shadow $R_s$ differently for the $AdS$ black hole spacetime in comparison to the black hole spacetime which is asymptotically flat. In particular the radius of the black hole shadow increases with increase in the Gauss-Bonnet parameter in case of the $AdS$ black hole spacetime and decreases in case of the asymptotically flat black hole spacetime. We then introduce a plasma background in order to observe the change in the silhouette of the black hole shadow due to a change in the refractive index of the plasma medium. Finally, we study the effect of the Gauss-Bonnet parameter $γ$ on the energy emission rate of the black hole which depends on the black hole shadow radius and represent the results graphically.
description: 18 pages Latex, comments are welcome
Optimal Mix of Feedstock for Biofuels: Implications for Land Use and GHG Emissions
Creators: name: Wang, Weiwei
name: Khanna, Madhu
name: Dwivedi, Puneet
name: Wang, Weiwei
name: Khanna, Madhu
name: Dwivedi, Puneet
Publisher: name: Unknown
Year: 2013
Subjects: Environmental Economics and Policy
Resource /Energy Economics and Policy

description: Increasing concerns about energy security and climate change mitigation have led to significant policy support for biofuels, particularly for cellulosic biofuels. This paper examines the short- and long-run effects of Renewable Fuel Standard (RFS) on the mix of biofuel feedstocks, food, fuel and wood markets and land use change by using an economic model that integrates the agriculture, forest and transportation fuel sectors. Our results show that RFS would lead to the production of about 1600 billion liters of corn ethanol over the 2010-2035 periods, which could constitute a maximum of two-thirds of the cumulative biofuel production; the remaining mandate is met by advanced biofuels. The logging and milling residues are the primary initial providers of biomass feedstocks. After year 2025, energy crops and crop residues will play the leading role in cellulosic feedstocks production. Producing these biofuels will not cause significant land use change between and within agricultural and forest sector as compared to the business-as-usual (BAU) case. While the RFS could significantly affect production, exports and prices of crop and livestock commodities relative to the BAU case, its impacts on the forest sector is found to be relatively small except for pulpwood related products in the long term. Overall, the RFS reduces cumulative social welfare over 2010-2035 periods by $78.8 Billion relative to the BAU case.
Variable-lag Granger Causality for Time Series Analysis
Creators: name: Amornbunchornvej, Chainarong
name: Zheleva, Elena
name: Berger-Wolf, Tanya Y.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Machine Learning (cs.LG)
subject: Econometrics (econ.EM)
subject: Quantitative Methods (q-bio.QM)
subject: Methodology (stat.ME)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences
subject: FOS: Economics and business
subject: FOS: Biological sciences
subject: G.3; I.2.3; I.2.6; J.4
subject: 91-08, 68T05, 62-07

description: Granger causality is a fundamental technique for causal inference in time series data, commonly used in the social and biological sciences. Typical operationalizations of Granger causality make a strong assumption that every time point of the effect time series is influenced by a combination of other time series with a fixed time delay. However, the assumption of the fixed time delay does not hold in many applications, such as collective behavior, financial markets, and many natural phenomena. To address this issue, we develop variable-lag Granger causality, a generalization of Granger causality that relaxes the assumption of the fixed time delay and allows causes to influence effects with arbitrary time delays. In addition, we propose a method for inferring variable-lag Granger causality relations. We demonstrate our approach on an application for studying coordinated collective behavior and show that it performs better than several existing methods in both simulated and real-world datasets. Our approach can be applied in any domain of time series analysis.
description: This paper will be appeared in the proceeding of 2019 IEEE International Conference on Data Science and Advanced Analytics (DSAA). The R package is available at https://github.com/DarkEyes/VLTimeSeriesCausality
MOESM1 of Lack of consensus in the choice of termination of pregnancy for Turner syndrome in France
Creators: name: Hermann, Monika
name: Khoshnood, Babak
name: Anselem, Olivia
name: Bouvattier, Claire
name: Coussement, Aurélie
name: Brisset, Sophie
name: Benachi, Alexandra
name: Vassilis Tsatsaris
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics

description: Additional file 1: Table S1. Table generalizing Grant’s method for more than two observers.
Lacconotinae LeConte 1862
Creators: name: Peck, Stewart B.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Mycteridae

description: SUBFAMILYLACCONOTINAE   Physcius fasciatus Pic 1912: 16; Blackwelder 1944-1957: 493; Valentine and Ivie 2005: 279; Ivie et al. 2008b: 254 (Physicus). Distribution. Guadeloupe, Guana, Montserrat; Lesser Antillesendemic.
description: Published as part of Peck, Stewart B., 2016, The beetles of the Lesser Antilles (Insecta, Coleoptera): diversity and distributions, pp. 1-360 in Insecta Mundi 2016 (460) on page 167, DOI: 10.5281/zenodo.5182961
A Simple Recommender Engine for Matching Final-Year Project Student with Supervisor
Creators: name: Ismail, Mohammad Hafiz
name: Razak, Tajul Rosli
name: Hashim, Muhamad Arif
name: Ibrahim, Alif Faisal
Publisher: name: arXiv
Year: 2019
Subjects: subject: Information Retrieval (cs.IR)
subject: FOS: Computer and information sciences

description: This paper discusses a simple recommender engine, which can match final year project student based on their interests with potential supervisors. The recommender engine is constructed based on Euclidean distance algorithm. The initial input data for the recommender system is obtained by distributing questionnaire to final year students and recording their response in CSV format. The recommender engine is implemented using Java class and application, and result of the initial tests has shown promises that the project is feasible to be pursued as it has the potential of solving the problem of final year students in finding their potential supervisors.
The r-process in supernova explosions from the collapse of O-Ne-Mg cores
Creators: name: Wanajo, S.
name: Tamamura, M.
name: Itoh, N.
name: Nomoto, K.
name: Ishimaru, Y.
name: Beers, T. C.
name: Nozawa, S.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We examine r-process nucleosynthesis in a "prompt supernova explosion" from an 8-10 Msun progenitor star, as an alternative scenario to the "neutrino wind" mechanism. In the present model, the progenitor star has formed an oxygen-neon-magnesium core at its center. The core-collapse simulations are performed with a one-dimension, Newtonian hydrodynamic code. We obtain a very weak prompt explosion, in which no r-processing occurs. We further simulate energetic prompt explosions by enhancement of the shock-heating energy, in order to investigate conditions necessary for the production of r-process nuclei in such events. The highly neutronized ejecta (Ye = 0.14-0.20) leads to robust production of r-process nuclei; their relative abundances are in excellent agreement with the solar r-process pattern. Our results suggest that prompt explosions of 8-10 Msun stars with oxygen-neon-magnesium cores can be a promising site of r-process nuclei.
description: 32 pages, 9 figures, accepted for publication in ApJ
Creating synthetic discrete-response regression models
Creators: name: Hilbe, Joseph M.
name: Hilbe, Joseph M.
Publisher: name: Unknown
Year: 2010
Subjects: subject: Research Methods/ Statistical Methods
subject: synthetic
subject: pseudorandom
subject: Monte Carlo
subject: simulation
subject: logistic
subject: probit
subject: Poisson
subject: NB1
subject: NB2
subject: NB-C
subject: hurdle
subject: offset
subject: ordered
subject: multinomial

description: The development and use of synthetic regression models has proven to assist statisticians in better understanding bias in data, as well as how to best interpret various statistics associated with a modeling situation. In this article, I present code that can be easily amended for the creation of synthetic binomial, count, and categorical response models. Parameters may be assigned to any number of predictors (which are shown as continuous, binary, or categorical), negative binomial heterogeneity parameters may be assigned, and the number of levels or cut points and values may be specified for ordered and unordered categorical response models. I also demonstrate how to introduce an offset into synthetic data and how to test synthetic models using Monte Carlo simulation. Finally, I introduce code for constructing a synthetic NB2-logit hurdle model.
Mata Matters: Stata in Mata
Creators: name: Gould, William
name: Gould, William
Publisher: name: Unknown
Year: 2010
Subjects: subject: Research Methods/ Statistical Methods
subject: Mata
subject: getmata
subject: putmata
subject: pr0050

description: Mata is Stata’s matrix language. In the Mata Matters column, we show how Mata can be used interactively to solve problems and as a programming language to add new features to Stata. The subject of this column is using Mata to solve data analysis problems with the new Stata commands putmata and getmata, which were added to official Stata 11 in the update of 11 February 2010.
Speaking Stata: The statsby strategy
Creators: name: Cox, Nicholas J.
name: Cox, Nicholas J.
Publisher: name: Unknown
Year: 2010
Subjects: subject: Research Methods/ Statistical Methods
subject: statsby
subject: graphics
subject: groups
subject: comparisons
subject: box plots
subject: confidence intervals

description: The statsby command collects statistics from a command yielding r-class or e-class results across groups of observations and yields a new reduced dataset. statsby is commonly used to graph such data in comparisons of groups; the subsets and total options of statsby are particularly useful in this regard. In this article, I give examples of using this approach to produce box plots and plots of confidence intervals.
Solid-fluid transition in a granular shear flow
Creators: name: Orpe, Ashish V.
name: Khakhar, D. V.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: The rheology of a granular shear flow is studied in a quasi-2d rotating cylinder. Measurements are carried out near the midpoint along the length of the surface flowing layer where the flow is steady and non-accelerating. Streakline photography and image analysis are used to obtain particle velocities and positions. Different particle sizes and rotational speeds are considered. We find a sharp transition in the apparent viscosity ($η$) variation with rms velocity ($u$). In the fluid-like region above the depth corresponding to the transition point (higher rms velocities) there is a rapid increase in viscosity with decreasing rms velocity. Below the transition depth we find $η\propto u^{-1.5}$ for all the different cases studied and the material approaches an amorphous solid-like state deep in the layer. The velocity distribution is Maxwellian above the transition point and a Poisson velocity distribution is obtained deep in the layer. The observed transition appears to be analogous to a glass transition.
description: 4 pages, 4 figures, submitted to Phys. Rev. Lett
MOESM7 of Comparative phosphorylation map of Dishevelled 3 links phospho-signatures to biological outputs
Creators: name: Kateřina Hanáková
name: Ondřej Bernatík
name: Kravec, Marek
name: Micka, Miroslav
name: Jitender Kumar
name: Harnoš, Jakub
name: Ovesná, Petra
name: Paclíková, Petra
name: Matěj Rádsetoulal
name: Potěšil, David
name: Tripsianes, Konstantinos
name: Lukáš Čajánek
name: Zbyněk Zdráhal
name: Vítězslav Bryja
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 6: Table S2. Sequence coverage of DVL3 in the individual experiments. Sequence coverage of DVL3 obtained for individual kinases in each replicate, in individual sample (sum of all three replicates) and throughout the experiment.
Additional file 6: of A metabolomics and proteomics study of the Lactobacillus plantarum in the grass carp fermentation
Creators: name: Ming, Tinghong
name: Han, Jiaojiao
name: Li, Yanyan
name: Lu, Chenyang
name: Qiu, Dihong
name: Li, Ye
name: Zhou, Jun
name: Su, Xiurong
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: Evolutionary Biology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Marine Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Table S1. The primer sequences for qRT-PCR. A Primer3plus software was used to design qRT-PCR analysis primers based on the genome sequence of Lactobacillus plantarum. (DOCX 15 kb)
Assessing Primary Care Providers’ Knowledge of Depression Screening using the Patient Health Questionnaire-9
Creators: name: Lincoln, Jeremy
Publisher: name: University of Massachusetts Amherst
Year: 2021

Background: Primary care providers are rarely trained on how to use common depression screening tools like the PHQ, leading to wide variations in practice, underdiagnosis, and undertreatment of this common chronic condition. Therefore, the goal of the quality improvement project was to evaluate the effectiveness of training primary care providers on the use of standardized depression screening tools. 
Methods:  An investigator-generated survey, informed by the medical director, measured changes in primary care provider knowledge of the PHQ-9. Survey responses were collected pre and post-intervention and analyzed via paired t-tests and descriptive summary statistics. 
Results: A paired t-test was used for the evaluation of any change from pre to post intervention. The results were considered to be statistically significant (t = 3.8730, df = 5, p = 0.0117). 
Conclusions: The primary care setting is ideal for initiating the depression screening process. Outcomes of this project showed a significant increase in knowledge of the correct use of the PHQ-9 after an educational intervention.

Keywords:  Depression, PHQ-9, screening for depression, depression in primary care
The production of collagen type I hydrolyzate derived from tilapia (Oreochromis sp.) skin using thermoase PC10F and its in silico analysis
Creators: name: Khairul Faizal Pa’ee
name: Razali, Nadia
name: Shahrul R. Sarbini
name: Suganya Nair Ramonaran Nair
name: Len, Kelly Yong Tau
name: Norfahana Abd-Talib
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: The main focus of this study was to produce the angiotensin-I converting enzyme (ACE) inhibitory peptides from collagen type I using new combination of Thermoase PC10F and tilapia skin as a protein collagen source. In silico evaluation of amino acids profile of collagen type I, ACE-inhibitory peptides and sensory profile of the hydrolyzate were performed using Protparam and BIOPEP, respectively, to initially predict the potential peptide produced. Hydrolysis conditions were studied based on the best preliminary design of degree hydrolysis (DH) using o-phthalaldehyde (OPA) method. The temperature of 60°C, pH of 5 and an enzyme to substrate ratio of 1:100 were observed as the best conditions to obtain the highest DH using Thermoase PC10F. Peptide chain length (PCL) showed a proportional decrease as DH increased. In silico study of alpha 1 and alpha 2 collagen type I indicated a significant amount of glycine and proline, which are known to stabilize the collagen structure. The profile of potential biological activity suggested that 247 ACE-inhibitory peptides could be obtained from the parent protein sequence of collagen type I alpha 1 and alpha 2. In silico hydrolysis by thermolysin is believed to release potent theoretical peptides with IC50 less than 5 μM for both collagen type I subunits with a high number of occurrences. Further analysis on its potential sensory peptides had shown that both alpha 1 and alpha 2 contained mainly sweet amino acid, bitter peptides, and bitter amino acids.
Tunable anisotropic absorption in monolayer black phosphorus using critical coupling
Creators: name: Liu, Tingting
name: Jiang, Xiaoyun
name: Wang, Huaixing
name: Liu, Yong
name: Zhou, Chaobiao
name: Xiao, Shuyuan
Publisher: name: arXiv
Year: 2019
Subjects: subject: Optics (physics.optics)
subject: Applied Physics (physics.app-ph)
subject: FOS: Physical sciences

description: We present a monolayer black phosphorus (BP)-based metamaterial structure for tunable anisotropic absorption in the mid-infrared. Based on the critical coupling mechanism of guided resonance, the structure realizes the high absorption efficiency of 99.65$\%$ for TM polarization, while only 2.61$\%$ at the same wavelength for TE polarization due to the intrinsic anisotropy of BP. The absorption characteristics can be flexibly controlled by changing critical coupling conditions, including the electron doping of BP, geometric parameters and incident angles of light. The results show feasibility in designing high-performance BP-based optoelectronic devices with spectral tunability and polarization selectivity.
Jamesia duofasciata Dillon and Dillon 1952
Creators: name: Nearns, Eugenio H.
name: Maier, Crystal A.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Cornales
Hydrangeaceae
Jamesia
Jamesia duofasciata

description: Jamesia duofasciata Dillon and Dillon, 1952: 59 (Fig. 7a, b)
Holotype, male
 Type locality. Ecuador, Bolívar, Balzapamba
description: Published as part of Nearns, Eugenio H. & Maier, Crystal A., 2016, Onciderini Thomson, 1860 (Coleoptera: Cerambycidae: Lamiinae) types of the Field Museum of Natural History (FMNH), with a brief history of the Coleoptera collection, pp. 1-7 in Insecta Mundi 2016 (494) on page 4, DOI: 10.5281/zenodo.5170653
Thaumastodinae Champion 1924
Creators: name: Peck, Stewart B.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Limnichidae

description: SUBFAMILYTHAUMASTODINAE   [Martinius ripisaltator Spilman 1966: 124. Distribution. Cuba, endemic. Notes. The habits of this group suggest that this genus, which inhabits seashore sand and beach drift, may be elsewhere in the Caribbean, and in the Lesser Antilles.]
description: Published as part of Peck, Stewart B., 2016, The beetles of the Lesser Antilles (Insecta, Coleoptera): diversity and distributions, pp. 1-360 in Insecta Mundi 2016 (460) on page 102, DOI: 10.5281/zenodo.5182961
Vanishing Effective Mass of the Neutrinoless Double Beta Decay?
Creators: name: Xing, Zhi-zhong
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We stress that massive neutrinos may be Majorana particles even if the effective mass of the neutrinoless double beta decay m_ee vanishes. We show that current neutrino oscillation data do allow m_ee = 0 to hold, if the Majorana CP-violating phases lie in two specific regions. Strong constraints on three neutrino masses can then be obtained. We find that the neutrino mass spectrum performs a normal hierarchy: m_1 < m_2 < m_3. A possible texture of the neutrino mass matrix is also illustrated under the m_ee = 0 condition.
description: RevTex 9 pages (2 PS figures included). More discussions and references added. Results partly changed. To appear in Phys. Rev. D
Multi-pole Dark Energy
Creators: name: Feng, Chao-Jun
name: Zhai, Xiang-Hua
name: Li, Xin-Zhou
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: While a scalar field with a pole in its kinetic term is often used to study the cosmological inflation, it can also play the role of dark energy, which is called the pole dark energy model. We propose a generalized model that the scalar field may have two or even multiple poles in the kinetic term and we call it the multi-pole dark energy. We find the poles can place some restrictions on the values of the original scalar field with non-canonical kinetic term. After transforming to the canonical form, we get a flat potential for the transformed new scalar field even if the original field has a steep one. It The late-time evolution of the universe is obtained explicitly for the two pole model, while dynamical analysis is performed for the multiple pole model. We find that it does have a stable attractor solution, which corresponds to the universe dominated by the potential of the scalar field.
description: 11 pages, 7 figures
Throscinae Laporte de Castelnau 1840
Creators: name: Peck, Stewart B.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Throscidae

description: SUBFAMILYTHROSCINAE   Aulonothroscus bicarinatus Fleutiaux 1911: 235; Fleutiaux 1947: 136; Blackwelder 1944-1957: 305. Distribution. Grenada *, Guadeloupe, St. Lucia *, St. Vincent *; Lesser Antillesendemic. Plate 18.
description: Published as part of Peck, Stewart B., 2016, The beetles of the Lesser Antilles (Insecta, Coleoptera): diversity and distributions, pp. 1-360 in Insecta Mundi 2016 (460) on page 105, DOI: 10.5281/zenodo.5182961
Chitosan film as recyclable adsorbent membrane to remove/recover hazardous pharmaceutical pollutants from water: the case of the emerging pollutant Furosemide
Creators: name: Rizzi, Vito
name: Gubitosa, Jennifer
name: Fini, Paola
name: Romita, Roberto
name: Nuzzo, Sergio
name: Gabaldón, José Antonio
name: Gorbe, María Isabel Fortea
name: Gómez-Morte, Teresa
name: Pinalysa Cosma
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified

description: Due to the negative effects of emerging contaminants on the environment, that can potentially induce deleterious effects in aquatic and human life, this paper focuses on the removal from the water of Furosemide, through the adsorption process. Indeed, only a few papers are available in the literature about the Furosemide adsorption and, chitosan films are thus proposed for this purpose as safe, sustainable, and recyclable adsorbent materials. In the present work, the effects on the adsorption process of several experimental parameters such as the pH values, ionic strength, amount of adsorbent/pollutant, and temperature values were investigated. The kinetics models, isotherms of adsorption, and the thermodynamic parameters were studied showing that the Furosemide physisorption occurred on the heterogeneous Chitosan surface, endothermically (ΔH° = +31.27 ± 3.40 kJ mol−1) and spontaneously (ΔS° = +150.00 ± 10.00 J mol−1 K−1), following a pseudo-second-order kinetic model. The 90% of the pollutant was adsorbed in 2 h, with a maximum adsorption capacity of 3.5 mg × g−1. Despite these relatively low adsorption capacities, experiments of desorption were performed and 100% of adsorbed Furosemide was recovered by using concentrated NaCl solutions, proposing a low-cost and green approach, with respect to the previous literature relative to the Furosemide adsorption, fundamental for the pollutant recovery and adsorbent reuse.
The magnetic reversal in dot arrays recognized by the self-organized adaptive neural network
Creators: name: Gmitra, Martin
name: Horvath, Denis
Publisher: name: arXiv
Year: 2003
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: The remagnetization dynamics of monolayer dot array superlattice XY 2-D spin model with dipole-dipole interactions is simulated. Within the proposed model of array, the square dots are described by the spatially modulated exchange-couplings. The dipole-dipole interactions are approximated by the hierarchical sums and spin dynamics is considered in regime of the Landau-Lifshitz equation. The simulation of reversal for $40 000$ spins exhibits formation of nonuniform intra-dot configurations with nonlinear wave/anti-wave pairs developed at intra-dot and inter-dot scales. Several geometric and parametric dependences are calculated and compared with oversimplified four-spin model of reversal. The role of initial conditions and the occurrence of coherent rotation mode is also investigated. The emphasis is on the classification of intra-dot or inter-dot (interfacial) magnetic configurations done by adaptive neural network with varying number of neurons.
description: 16 figures
Additional file 6 of Skeletal muscle gene expression in response to resistance exercise: sex specific regulation
Creators: name: Dongmei Liu
name: Sartor, Maureen A
name: Nader, Gustavo A
name: Gutmann, Laurie
name: Treutelaar, Mary K
name: Pistilli, Emidio E
name: IglayReger, Heidi B
name: Burant, Charles F
name: Hoffman, Eric P
name: Gordon, Paul M
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 6: Table S6: Differential expression of the selected genes in exercised vs. rested muscle measured by qRT-PCR. (DOCX 14 KB)
MOESM6 of Comparative phosphorylation map of Dishevelled 3 links phospho-signatures to biological outputs
Creators: name: Kateřina Hanáková
name: Ondřej Bernatík
name: Kravec, Marek
name: Micka, Miroslav
name: Jitender Kumar
name: Harnoš, Jakub
name: Ovesná, Petra
name: Paclíková, Petra
name: Matěj Rádsetoulal
name: Potěšil, David
name: Tripsianes, Konstantinos
name: Lukáš Čajánek
name: Zbyněk Zdráhal
name: Vítězslav Bryja
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: Additional file 5: Table S1. Intensities of the individual phosphorylated sites (raw data). Mean phosphorylated peptide intensities (in log10 scale) obtained for individual sample from direct (pipeline #1) and enriched analysis processed (pipeline #2) are expressed in the shades of blue. ND corresponds to not detected signals or signals with intensity below 1 × 106.
Arsenic and smokeless tobacco exposure induces DNA damage and oxidative stress in reproductive organs of female Swiss albino mice
Creators: name: Barbhuiya, Sweety Nath
name: Dharmeswar Barhoi
name: Anirudha Giri
name: Sarbani Giri
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Physiology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Computational Biology

description: Arsenic contamination in the groundwater of Southern Assam, India is well-documented. A specific type of smokeless tobacco (sadagura, SG) is highly prevalent among the local population. Thus, the present study is aimed to evaluate the toxicological implications of arsenic and smokeless tobacco co-exposure on the reproductive health of female mice. The estrous cycle of experimental animals was monitored for 30 days. Histopathological studies and comet assay of ovarian and uterine tissues were performed after 30 days of exposure to SG and arsenic (sodium arsenite, SA). Oxidative stress was estimated biochemically by taking tissue glutathione, lipid peroxidation (LPO), and superoxide dismutase activity as endpoints. Our findings indicated a prolonged diestrus phase in the SG + L + SA group (p
Additional file 1: of Aspirin eugenol ester regulates cecal contents metabolomic profile and microbiota in an animal model of hyperlipidemia
Creators: name: Ma, Ning
name: Liu, Xi-Wang
name: Kong, Xiao-Jun
name: Li, Shi-Hong
name: Jiao, Zeng-Hua
name: Qin, Zhe
name: Yang, Ya-Jun
name: Li, Jian-Yong
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified

description: Table S1. Optimized gradient elution program of UPLC-Q-TOF/MS in cecal content metabonomic study. Table S2. OTU table summary of the samples. Table S3. Difference in relative abundanceof gut microbiotaatphylum level. Figure S1. TIC of cecal content samples in positive and negative modes. Figure S2. PCA score plot basedon the cecal content metabolic profiling in positive and negative modes. Figure S3. Rarefactioncurve of the cecal content samples. (PDF 336 kb)