cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
MOESM1 of Genomic and transcriptomic analysis reveal molecular basis of salinity tolerance in a novel strong salt-tolerant rice landrace Changmaogu
Creators: name: Sun, Bing-Rui
name: Fu, Chong-Yun
name: Fan, Zhi-Lan
name: Chen, Yu
name: Chen, Wen-Feng
name: Zhang, Jing
name: Jiang, Li-Qun
name: Lv, Shuwei
name: Pan, Da-Jian
name: Li, Chen
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Plant Biology

description: Additional file 1: Table S1. The mapped candidate regions based on SNP-index and ED. Table S2. The mapped candidate regions based on InDel-index and ED. Table S3. The overlapped candidate regions based on polymorphic SNPs and InDels. Table S4. Characteristics of the RT-PCR primers for validating the results of transcriptomic sequencing. Table S5. Functional annotation of the DEGs in four types of expression patterns at the seedling stage
title: ADCO, Cart. 186 (11 H 71), f. 0088r
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, t. II (XVe siècle), tome II, Archives départementales de la Côte-d'Or, C
art. 186 (11 H 71). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, t. II (XVe siècle), tome II, Archives départementales de la
 Côte-d'Or, Cart. 186 (11 H 71), f. 0088r, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-
project.eu/
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
Photon-gated spin transistor
Creators: name: Li, Fan
name: Song, Cheng
name: Cui, Bin
name: Peng, Jingjing
name: Gu, Youdi
name: Wang, Guangyue
name: Pan, Feng
Publisher: name: arXiv
Year: 2017
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Spin-polarized field-effect transistor (spin-FET), where a dielectric layer is generally employed for the electrical gating as the traditional FET, stands out as a seminal spintronic device under the miniaturization trend of electronics. It would be fundamentally transformative if optical gating was used for spin-FET. We report a new type of spin-polarized field-effect transistor (spin-FET) with optical gating, which is fabricated by partial exposure of the (La,Sr)MnO3 channel to light-emitting diode (LED) light. The manipulation of the channel conductivity is ascribed to the enhanced scattering of the spin-polarized current by photon-excited antiparallel aligned spins. And the photon-gated spin-FET shows strong light power dependence and reproducible enhancement of resistance under light illumination, indicting well-defined conductivity cycling features. Our finding would enrich the concept of spin-FET and promote the use of optical means in spintronics for low power consumption and ultrafast data processing.
description: 16 pages, 4 figures
title: Predation Thresholds in Marine Microbial Communities Applied to Environments with Low Prey Abundances
Creators: name: Bailey, Bonnie
Publisher: name: Old Dominion University
publisherIdentifier: https://ror.org/04zjtrb98
publisherIdentifierScheme: ROR
Year: 2014

description: Prokaryotes (Bacteria and Archaea) comprise the largest component of biomass in the world's oceans. Their abundances are controlled by resource availability, viral infections and protist grazing. Many pico- and nano-eukaryotic predators grow almost as quickly as their prey, and greatly increase in numbers as soon as their prey do, leading in tum to depletion in prokaryotes. It is still unclear however, as to what extent microbial predators are able to feed in low prey environments, most prominently in the largest biome on Earth, the deep sea (below l 000 m depth). It has been hypothesized that in low prey environments, a lower threshold of prokaryote concentrations exists, at which it is no longer possible to obtain sufficient nutrition from predation. While lower feeding thresholds have been incorporated into ecosystem models for larger plankton, reports on the existence of a lower feeding threshold in microbial predator-prey systems have been conflicting. In functional feeding response experiments and in numerical (population) response experiments, I was able to demonstrate that lower thresholds indeed exist. The lower threshold below which feeding ceases (~ 121,000 prokaryotes mL-1), was lower than the threshold for the numerical response (~ 212,000 prokaryotes mL-1). By applying the lower feeding threshold and clearance rates to prokaryote and eukaryote abundances obtained from three different deep-sea expeditions throughout the Atlantic, I was able to predict potential environmental grazing coefficients. These data suggest that average prokaryote concentrations within the deep ocean are too low to accommodate the energy requirements needed for the survival of bacterivores. This result, however, contradicts findings that bacterivores exist in the deep sea, albeit at low numbers. These conflicting observations can be reconciled if the prey distribution in the deep sea is considered to be highly heterogeneous, and microbial predators are able to find and exploit highly concentrated prey patches on marine aggregates.
Additional file 1: of Deprescribing preventive cardiovascular medication in patients with predicted low cardiovascular disease risk in general practice â the ECSTATIC study: a cluster randomised non-inferiority trial
Creators: name: Luymes, Clare
name: Poortvliet, Rosalinde
name: Geloven, Nan Van
name: Waal, Margot De
name: Drewes, Yvonne
name: Blom, Jeanet
name: Smidt, Nynke
name: Assendelft, Willem
name: Hout, Wilbert Van Den
name: Ruijter, Wouter De
name: Mattijs Numans
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Pharmacology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Inclusion and exclusion criteria of the Evaluating Cessation of Statins and Antihypertensive Treatment in Primary Care Trial, as approved by the Medical Ethics Committee of Leiden University Medical Centre. (DOCX 22 kb)
YOSHLARNING SIYOSIY ONGINI RIVOJLANISHIDA IJTIMOIY TARMOQLARNING O'RNI
Creators: name: Inamov, Oybek
Publisher: name: Zenodo
Year: 2025

description: Bugungi globallashuv davrida axborot texnologiyalarining, ayniqsa, ijtimoiy tarmoqlarning keng rivojlanishi yoshlarning dunyoqarashi, siyosiy ong va faolligiga bevosita ta’sir qilmoqda. Ijtimoiy tarmoqlar – bu faqatgina muloqot vositasi emas, balki siyosiy ma’lumotlar, yangiliklar va muhokamalar maydoniga aylangan. Shu sababli, ularning yoshlar siyosiy tarbiyasidagi o‘rni tobora ortib bormoqda.
Investigating the excited $Ω^{0}_{c}$ states through $Ξ_{c}K$ and $Ξ^{'}_{c}K$ decay channels
Creators: name: Huang, Hongxia
name: Ping, Jialun
name: Wang, Fan
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: Inspired by the five newly observed $Ω^{0}_{c}$ states by the LHCb detector, we study the $Ω_{c}^{0}$ states as the $S-$wave molecular pentaquarks with $I=0$, $J^{P}=\frac{1}{2}^{-}$, $\frac{3}{2}^{-}$, and $\frac{5}{2}^{-}$ by solving the RGM equation in the framework of chiral quark model. Both the energies and the decay widths are obtained in this work. Our results suggest that $Ω_{c}(3119)^{0}$ can be explained as an $S-$wave resonance state of $ΞD$ with $J^{P}=\frac{1}{2}^{-}$, and the decay channels are the $S-$wave $Ξ_{c} K$ and $Ξ^{'}_{c}K$ . Other reported $Ω^{0}_{c}$ states cannot be obtained in our present calculation. Another $Ω_{c}^{0}$ state with much higher mass 3533 MeV with $J^{P}=\frac{5}{2}^{-}$ is also obtained. In addition, the calculation is extended to the $Ω_{b}^{0}$ states, similar results as that of $Ω^{0}_{c}$ are obtained.
description: 6 pages, 2 figures
Propagating Ferrodark Solitons in a Superfluid: Exact Solutions and Anomalous Dynamics
Creators: name: Yu, Xiaoquan
name: Blakie, P. B.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: Pattern Formation and Solitons (nlin.PS)
subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: FOS: Physical sciences

description: Exact propagating topological solitons are found in the easy-plane phase of ferromagnetic spin-1 Bose-Einstein condensates, manifesting themselves as kinks in the transverse magnetization. Propagation is only possible when the symmetry-breaking longitudinal magnetic field is applied. Such solitons have two types: a low energy branch with positive inertial mass and a higher branch solution with negative inertial mass. Both types become identical at the maximum speed, a new speed bound that is different from speed limits set by the elementary excitations. The physical mass, which accounts for the number density dip, is negative for both types. In a finite one-dimensional system subject to a linear potential, the soliton undergoes oscillations caused by transitions between the two types occurring at the maximum speed.
description: 4+3 pages, 8 figures
title: ADCO, Grènetier de Cîteaux : comptes (1499-1503) (11 H 1173), f. 00821
Creators: name: de la Côte-d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2019
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: comptes

description: Grènetier de Cîteaux : comptes (1499-1503), Archives départementales de la Côte-d'Or, (11 H 1173). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Grènetier de Cîteaux : comptes (1499-1503), Archives départementales de la Côte-d'Or, (11 H 1173), f. 00821, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Technical vocabulary in government spoken communications: The team of five million in bubbles, PPE and CBACs
Creators: name: Coxhead, Averil
Publisher: name: Open Access Te Herenga Waka-Victoria University of Wellington
Year: 2024
Subjects: classificationCode: 3904
subject: Specialist studies in education
classificationCode: 4704
subject: Linguistics
subject: FOS: Languages and literature

description: The NewZealand government delivered regular 1 p.m. televised COVID-19 briefings from March 2020. These events had a crucial communicative function and were usually headed by top government and medical officials. This study focuses on technical vocabulary in a corpus made up of these briefings, including single words (grouped into technical word families) and acronyms (e.g., bubble and PPE) as well as the most frequent two to five-word multiword units (MWUs; e.g., case numbers, genomic sequencing, and chains of transmission) containing at least one technical single word family member. The corpus consists of 20 prepared speeches: 10 each in 2020 and 2021 by Prime Minister Jacinda Ardern and Director-General of Health Dr. Ashley Bloomfield (50,782 tokens). The results showed that 6.02% of the single-word families (e.g., outbreak(-s), contact(-s/-less)) in the texts were technical, which may present a challenge for comprehension. Unsurprisingly, the Director-General of Health used moretechnical vocabulary than the Prime Minister. The top 20 MWUs containing technical vocabulary were identified in the corpus. Most were two-word collocations (e.g., negative test, testing centre/s,andnumber of tests). Implications for identifying and dealing with technical vocabulary in both government communications and language education are discussed
ProCCM Trial U5M appendices Bull WHO final.pdf
Creators: name: Treleaven, Emily
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 420601
subject: Community child health

description: This document contains the supplementary materials for the following peer-reviewed publication:Liu JX, Treleaven E, Whidden CE, Doumbia S, Koné N, Cissé AB, Diop A, Berthé M, Guindo M, Koné BM, Fay MA, Johnson AD, Kayentao K. (2024). Proactive home visits by community health workers and under-five mortality: a cluster-randomised trial in Mali. Bulletin of the World Health Organization, Forthcoming.
无人机的控制程序.docx
Creators: name: 何刚, 何刚
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 400199
subject: Aerospace engineering not elsewhere classified
classificationCode: 400103
subject: Aircraft performance and flight control systems

description:     这里展示了最新设计的无人机无线电遥控飞行控制系统。用一个有无无线电遥控端口数据的询问，实现了无线电指令键码遥控和无人机陀螺仪水平方向平衡调整的两种状态转换。相信这种无人机飞行控制系统的创造对大家的飞机，飞行器的飞行控制系统设计一定有所帮助。“无人机"的名字不是我发明的，但新型无人机是我发明的，从里到外把它创造出来，在新的无人机时代，是我们的向往！
The K2-ESPRINT Project VI: K2-105 b, a Hot-Neptune around a Metal-rich G-dwarf
Creators: name: Narita, Norio
name: Hirano, Teruyuki
name: Fukui, Akihiko
name: Hori, Yasunori
name: Dai, Fei
name: Yu, Liang
name: Livingston, John
name: Ryu, Tsuguru
name: Nowak, Grzegorz
name: Kuzuhara, Masayuki
name: Takeda, Yoichi
name: Albrecht, Simon
name: Kudo, Tomoyuki
name: Kusakabe, Nobuhiko
name: Palle, Enric
name: Ribas, Ignasi
name: Tamura, Motohide
name: Van Eylen, Vincent
name: Winn, Joshua N.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: We report on the confirmation that the candidate transits observed for the star EPIC 211525389 are due to a short-period Neptune-sized planet. The host star, located in K2 campaign field 5, is a metal-rich ([Fe/H] = 0.26$\pm$0.05) G-dwarf (T_eff = 5430$\pm$70 K and log g = 4.48$\pm$0.09), based on observations with the High Dispersion Spectrograph (HDS) on the Subaru 8.2m telescope. High-spatial resolution AO imaging with HiCIAO on the Subaru telescope excludes faint companions near the host star, and the false positive probability of this target is found to be
description: 11 pages, 9 figures, 4 tables, PASJ accepted
From Distributed Machine Learning to Federated Learning: A Survey
Creators: name: Liu, Ji
name: Huang, Jizhou
name: Zhou, Yang
name: Li, Xuhong
name: Ji, Shilei
name: Xiong, Haoyi
name: Dou, Dejing
Publisher: name: arXiv
Year: 2021
Subjects: subject: Distributed, Parallel, and Cluster Computing (cs.DC)
subject: Artificial Intelligence (cs.AI)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: In recent years, data and computing resources are typically distributed in the devices of end users, various regions or organizations. Because of laws or regulations, the distributed data and computing resources cannot be directly shared among different regions or organizations for machine learning tasks. Federated learning emerges as an efficient approach to exploit distributed data and computing resources, so as to collaboratively train machine learning models, while obeying the laws and regulations and ensuring data security and data privacy. In this paper, we provide a comprehensive survey of existing works for federated learning. We propose a functional architecture of federated learning systems and a taxonomy of related techniques. Furthermore, we present the distributed training, data communication, and security of FL systems. Finally, we analyze their limitations and propose future research directions.
description: Accepted by KAIS
Additional file 2: of Care quality following intrauterine death in Spanish hospitals: results from an online survey
Creators: name: Cassidy, Paul
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Cell Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Marine Biology
subject: Science Policy
subject: Computational Biology

description: Questionnaire (English). (PDF 394 kb)
Reply to: Comment on "Radiation forces and torque on a rigid elliptical cylinder in acoustical plane progressive and (quasi)standing waves with arbitrary incidence, arXiv:1603.03446" [Phys. Fluids 28, 077104 (2016)]
Creators: name: Mitri, F. G.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Classical Physics (physics.class-ph)
subject: FOS: Physical sciences

description: The aim of this communication is to correct inaccurate statements presented in a Commentary on the paper titled: "Radiation forces and torque on a rigid elliptical cylinder in acoustical plane progressive and (quasi)standing waves with arbitrary incidence" [Phys. Fluids 28, 077104 (2016)].
description: 3 pages
Feynman-Vernon influence functional approach to quantum transport in interacting nanojunctions: An analytical hierarchical study
Creators: name: Magazzù, L.
name: Grifoni, M.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We present a nonperturbative and formally exact approach for the charge transport in interacting nanojunctions based on a real time path integral formulation of the reduced system dynamics. An expansion of the influence functional in terms of the number of tunneling transitions, and integration of the Grassmann variables between the tunneling times, allows us to obtain a still exact generalized master equation (GME) for the populations of the reduced density matrix (RDM) in the occupation number representation, as well as a formally exact expression for the current. By borrowing the nomenclature of the famous spin-boson problem, we characterize the two-state dynamics of such degrees of freedom on the forward and backward branches in terms of single four-state paths with alternating blips and sojourns. This allows a diagrammatic representation of the GME kernel and its parametrization in terms of sequences of blips and sojourns. We apply our formalism to the exactly solvable resonant level model (RLM) and to the the single impurity Anderson model (SIAM). We demonstrate a hierarchical diagrammatic structure of the exact GME kernel. While the hierarchy closes at the second-tier level for the RLM, this is not the case for the interacting SIAM. Upon inspection of the GME, known results from various perturbative and nonperturbative approximation schemes to quantum transport in the SIAM are recovered. Finally, a noncrossing approximation for the hierarchical kernel is developed, which enables us to systematically decrease temperature at each next level of the approximation. Analytical results are presented, both in equilibrium and nonequilibrium, including the case of an applied magnetic field.
description: 75 pages, 35 figures
title: 01_0441
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
Additional file 1 of Novel Ti3C2Tx MXene nanozyme with manageable catalytic activity and application to electrochemical biosensor
Creators: name: Yu, Rongjun
name: Xue, Jian
name: Wang, Yang
name: Qiu, Jingfu
name: Huang, Xinyi
name: Chen, Anyi
name: Xue, Jianjiang
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Hematology

description: Additional file 1: S1. Buffers. S2. Apparatus. S3. Synthesis of AuNPs. S4. Synthesis of magnetically responsive AuNPs-coated Fe3O4 (Au@Fe3O4). S5. Electrochemical measurement. Fig. S1. Energy dispersive X-ray spectroscopy (EDX) patterns of the Ti3C2Tx MXene. Fig. S2. DPV curves measured with bare GCE and Ti3C2Tx modified GCE with different substrates. Fig. S3. Optimized geometries of 1-naphthol on Ti3C2Tx MXene. Fig. S4. Gel electrophoresis characterization for the DNA walking strategy. Fig. S5. Reproducibility of the designed biosensor. Fig. S6. Characterization of electrode assembly process. Table S1. Sequences of oligonucleotides used in this work. Table S2. Comparison of available methods for the detection of BCR/ABL. Table S3. Determination of BCR/ABL in human serum samples (n=3) with the developed electrochemical biosensor. Table S4. Comparison of the concentration of clinical samples (n=3) by proposed method (DPV) and current widely used methods (reverse transcription PCR).
Additional file 1: of Distribution of glomerular diseases in Taiwan: preliminary report of National Renal Biopsy Registryâ publication on behalf of Taiwan Society of Nephrology
Creators: name: Hsien-Fu Chiu
name: Hung-Chun Chen
name: Kuo-Cheng Lu
name: Kuo-Hsiung Shu
Publisher: name: figshare
Year: 2018
Subjects: Medicine
Pharmacology
Marine Biology
Cancer
Science Policy
Computational Biology

description: Institutional review boards (IRB) that approved this study and approval codes. (DOC 31 kb)
Point Cloud Audio Processing
Creators: name: Subramani, Krishna
name: Smaragdis, Paris
Publisher: name: arXiv
Year: 2021
Subjects: subject: Audio and Speech Processing (eess.AS)
subject: Machine Learning (cs.LG)
subject: Sound (cs.SD)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Computer and information sciences

description: Most audio processing pipelines involve transformations that act on fixed-dimensional input representations of audio. For example, when using the Short Time Fourier Transform (STFT) the DFT size specifies a fixed dimension for the input representation. As a consequence, most audio machine learning models are designed to process fixed-size vector inputs which often prohibits the repurposing of learned models on audio with different sampling rates or alternative representations. We note, however, that the intrinsic spectral information in the audio signal is invariant to the choice of the input representation or the sampling rate. Motivated by this, we introduce a novel way of processing audio signals by treating them as a collection of points in feature space, and we use point cloud machine learning models that give us invariance to the choice of representation parameters, such as DFT size or the sampling rate. Additionally, we observe that these methods result in smaller models, and allow us to significantly subsample the input representation with minimal effects to a trained model performance.
description: Accepted at WASPAA 2021, Code: https://github.com/SubramaniKrishna/point-cloud-audio
Circular spectropolarimetric sensing of chiral photosystems in decaying leaves
Creators: name: Patty, C. H. Lucas
name: Visser, Luuk J. J.
name: Ariese, Freek
name: Buma, Wybren Jan
name: Sparks, William B.
name: van Spanning, Rob J. M.
name: Röling, Wilfred F. M.
name: Snik, Frans
Publisher: name: arXiv
Year: 2017
Subjects: subject: Biomolecules (q-bio.BM)
subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: Biological Physics (physics.bio-ph)
subject: FOS: Biological sciences
subject: FOS: Physical sciences

description: Circular polarization spectroscopy has proven to be an indispensable tool in photosynthesis research and (bio)-molecular research in general. Oxygenic photosystems typically display an asymmetric Cotton effect around the chlorophyll absorbance maximum with a signal $\leq 1 \%$. In vegetation, these signals are the direct result of the chirality of the supramolecular aggregates. The circular polarization is thus directly influenced by the composition and architecture of the photosynthetic macrodomains, and is thereby linked to photosynthetic functioning. Although ordinarily measured only on a molecular level, we have developed a new spectropolarimetric instrument, TreePol, that allows for both laboratory and in-the-field measurements. Through spectral multiplexing, TreePol is capable of fast measurements with a sensitivity of $\sim 1*10^{-4}$ and is therefore suitable of non-destructively probing the molecular architecture of whole plant leaves. We have measured the chiroptical evolution of \textit{Hedera helix} leaves for a period of 22 days. Spectrally resolved circular polarization measurements (450-900 nm) on whole leaves in transmission exhibit a strong decrease in the polarization signal over time after plucking, which we accredit to the deterioration of chiral macro-aggregates. Chlorophyll \textit{a} levels measured over the same period by means of UV-Vis absorption and fluorescence spectroscopy showed a much smaller decrease. With these results we are able to distinguish healthy from deteriorating leaves. Hereby we indicate the potency of circular polarization spectroscopy on whole and intact leaves as a nondestructive tool for structural and plant stress assessment. Additionally, we underline the establishment of circular polarization signals as remotely accessible means of detecting the presence of extraterrestrial life.
description: 29 pages, 6 figures
Collective Phenomena in $pp$ and $ep$ Scattering
Creators: name: Celiberto, Francesco Giovanni
name: Fiore, Roberto
name: Jenkovszky, László
Publisher: name: arXiv
Year: 2016
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Bjorken scaling violation in deep inelastic electron-proton scattering (DIS) is related to the rise of hadronic cross sections by using the additive quark model. Of special interest is the connection between saturation in the low-$x$ behavior of the DIS structure functions (SF) and possible slow-down of the $pp$ cross section rise due to saturation effects. We also identify saturation effects in the DIS SF with phase transition that can be described by the Van der Waals equation of state.
description: 4 pages, 1 figure; presented by L. Jenkovszky at "Diffraction 2016", International Workshop on Diffraction in High-Energy Physics, Acireale (Catania, Sicily), Sept. 2-8, 2016; to be published in the conference proceedings by AIP
Additional file 1: Table S1. of Automated image analysis detects aging in clinical-grade mesenchymal stromal cell cultures
Creators: name: S. Oja
name: P. Komulainen
name: A. Penttilä
name: J. Nystedt
name: M. Korhonen
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Marine Biology
subject: Hematology

description: Surface antigen expression of the MSCs. All cells (n = 6) expressed typical surface antigens of MSCs. In distinction to ISCT minimal criteria, MSCs expressed variable levels of HLA-DR antigen. (DOCX 13 kb)
BubbleNet: Inferring micro-bubble dynamics with semi-physics-informed deep learning
Creators: name: Zhai, Hanfeng
name: Zhou, Quan
name: Hu, Guohui
Publisher: name: arXiv
Year: 2021
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: Machine Learning (cs.LG)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences
subject: 7602, 76T10, 68T05

description: Micro-bubbles and bubbly flows are widely observed and applied in chemical engineering, medicine, involves deformation, rupture, and collision of bubbles, phase mixture, etc. We study bubble dynamics by setting up two numerical simulation cases: bubbly flow with a single bubble and multiple bubbles, both confined in the microchannel, with parameters corresponding to their medical backgrounds. Both the cases have their medical background applications. Multiphase flow simulation requires high computation accuracy due to possible component losses that may be caused by sparse meshing during the computation. Hence, data-driven methods can be adopted as an useful tool. Based on physics-informed neural networks (PINNs), we propose a novel deep learning framework BubbleNet, which entails three main parts: deep neural networks (DNN) with sub nets for predicting different physics fields; the semi-physics-informed part, with only the fluid continuum condition and the pressure Poisson equation $\mathcal{P}$ encoded within; the time discretized normalizer (TDN), an algorithm to normalize field data per time step before training. We apply the traditional DNN and our BubbleNet to train the coarsened simulation data and predict the physics fields of both the two bubbly flow cases. The BubbleNets are trained for both with and without $\mathcal{P}$, from which we conclude that the 'physics-informed' part can serve as inner supervision. Results indicate our framework can predict the physics fields more accurately, estimating the prediction absolute errors. Our deep learning predictions outperform traditional numerical methods computed with similar data density meshing. The proposed network can potentially be applied to many other engineering fields.
description: Refine the manuscript
title: ADCO, Premier cartulaire de l'abbaye de Molesmes (XIIe siècle), Cart. 142 (7 H 6), 128 pages, f. 017
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2009
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Premier cartulaire de l'abbaye de Molesmes (XIIe siècle), Archives départementales de la Côte-d'Or, Cart. 142 (7 H 6), 128 pages, f. 017, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Premier cartulaire de l'abbaye de Molesmes (XIIe siècle), Archives départementales de la Côte-d'Or, Cart. 142 (7 H 6), 128 pages, f. 017, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Molesme
description: Provenance: http://www.wikidata.org/entity/Q334044
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb137389344
Additional file 1: of Care quality following intrauterine death in Spanish hospitals: results from an online survey
Creators: name: Cassidy, Paul
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Marine Biology
subject: Science Policy

description: Questionnaire (Spanish). (PDF 425 kb)
Wave equation for operators with discrete spectrum and irregular propagation speed
Creators: name: Ruzhansky, Michael
name: Tokmagambetov, Niyaz
Publisher: name: arXiv
Year: 2017
Subjects: subject: Analysis of PDEs (math.AP)
subject: Mathematical Physics (math-ph)
subject: FOS: Mathematics
subject: FOS: Physical sciences
subject: 35G10

description: Given a Hilbert space, we investigate the well-posedness of the Cauchy problem for the wave equation for operators with discrete non-negative spectrum acting on it. We consider the cases when the time-dependent propagation speed is regular, Hölder, and distributional. We also consider cases when it it is strictly positive (strictly hyperbolic case) and when it is non-negative (weakly hyperbolic case). When the propagation speed is a distribution, we introduce the notion of "very weak solutions" to the Cauchy problem. We show that the Cauchy problem for the wave equation with the distributional coefficient has a unique "very weak solution" in appropriate sense, which coincides with classical or distributional solutions when the latter exist. Examples include the harmonic oscillator and the Landau Hamiltonian on $\mathbb R^n$, uniformly elliptic operators of different orders on domains, Hörmander's sums of squares on compact Lie groups and compact manifolds, operators on manifolds with boundary, and many others.
description: 40 pages. arXiv admin note: text overlap with arXiv:1611.05600
Fast-GANFIT: Generative Adversarial Network for High Fidelity 3D Face Reconstruction
Creators: name: Gecer, Baris
name: Ploumpis, Stylianos
name: Kotsia, Irene
name: Zafeiriou, Stefanos
Publisher: name: arXiv
Year: 2021
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: A lot of work has been done towards reconstructing the 3D facial structure from single images by capitalizing on the power of Deep Convolutional Neural Networks (DCNNs). In the recent works, the texture features either correspond to components of a linear texture space or are learned by auto-encoders directly from in-the-wild images. In all cases, the quality of the facial texture reconstruction is still not capable of modeling facial texture with high-frequency details. In this paper, we take a radically different approach and harness the power of Generative Adversarial Networks (GANs) and DCNNs in order to reconstruct the facial texture and shape from single images. That is, we utilize GANs to train a very powerful facial texture prior \edit{from a large-scale 3D texture dataset}. Then, we revisit the original 3D Morphable Models (3DMMs) fitting making use of non-linear optimization to find the optimal latent parameters that best reconstruct the test image but under a new perspective. In order to be robust towards initialisation and expedite the fitting process, we propose a novel self-supervised regression based approach. We demonstrate excellent results in photorealistic and identity preserving 3D face reconstructions and achieve for the first time, to the best of our knowledge, facial texture reconstruction with high-frequency details.
description: TPAMI camera ready (submitted: 05-May-2020); Check project page: https://github.com/barisgecer/GANFit. arXiv admin note: substantial text overlap with arXiv:1902.05978
High quality-factor diamond-confined open microcavity
Creators: name: Flågan, Sigurd
name: Riedel, Daniel
name: Javadi, Alisa
name: Jakubczyk, Tomasz
name: Maletinsky, Patrick
name: Warburton, Richard J.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Quantum Physics (quant-ph)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: With a highly coherent, optically addressable electron spin, the nitrogen vacancy (NV) centre in diamond is a promising candidate for a node in a quantum network. However, the NV centre is a poor source of coherent single photons owing to a long radiative lifetime, a small branching ratio into the zero-phonon line (ZPL) and a poor extraction efficiency out of the high-index host material. In principle, these three shortcomings can be addressed by resonant coupling to a single mode of an optical cavity. Utilising the weak-coupling regime of cavity electrodynamics, resonant coupling between the ZPL and a single cavity-mode enhances the transition rate and branching ratio into the ZPL. Furthermore, the cavity channels the light into a well-defined mode thereby facilitating detection with external optics. Here, we present an open Fabry-Perot microcavity geometry containing a single-crystal diamond membrane, which operates in a regime where the vacuum electric field is strongly confined to the diamond membrane. There is a field anti-node at the diamond-air interface. Despite the presence of surface losses, quality factors exceeding $120\,000$ and a finesse $\mathcal{F}=11\,500$ were observed. We investigate the interplay between different loss mechanisms, and the impact these loss channels have on the performance of the cavity. This analysis suggests that the "waviness" (roughness with a spatial frequency comparable to that of the microcavity mode) is the mechanism preventing the quality factors from reaching even higher values. Finally, we apply the extracted cavity parameters to the NV centre and calculate a predicted Purcell factor exceeding 150.
description: 12 pages, 6 figures
Search for strongly interacting massive particles generating trackless jets in proton-proton collisions at $\sqrt{s} = $ 13 TeV
Creators: name: CMS Collaboration
Publisher: name: arXiv
Year: 2021
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: A search for dark matter in the form of strongly interacting massive particles (SIMPs) using the CMS detector at the LHC is presented. The SIMPs would be produced in pairs that manifest themselves as pairs of jets without tracks. The energy fraction of jets carried by charged particles is used as a key discriminator to suppress efficiently the large multijet background, and the remaining background is estimated directly from data. The search is performed using proton-proton collision data corresponding to an integrated luminosity of 16.1 fb$^{-1}$, collected with the CMS detector in 2016. No significant excess of events is observed above the expected background. For the simplified dark matter model under consideration, SIMPs with masses up to 100 GeV are excluded and further sensitivity is explored towards higher masses.
description: Replaced with the published version. Added the journal reference and the DOI. All the figures and tables can be found at http://cms-results.web.cern.ch/cms-results/public-results/publications/EXO-17-010 (CMS Public Pages)
Potential multifunctional agents with anti-hepatoma and anti-inflammation properties by inhibiting NF-кB activation
Creators: name: Su, Chang-Ming
name: Hou, Gui-Ge
name: Wang, Chun-Hua
name: Zhang, Hong-Qin
name: Yang, Cheng
name: Liu, Mei
name: Hou, Yun
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Inhibition of NF-κB signalling has been demonstrated as a therapeutic option in treating inflammatory diseases and cancers. Herein, we synthesized novel dissymmetric 3,5-bis(arylidene)-4-piperidones (BAPs, 83–102) and characterized fully. MTT and ELISA assay were performed to screen the anti-hepatoma and anti-inflammation properties. 96 showed the most potential bioactivity. 96 could promote HepG2 apoptosis through up-regulating the expression of C-Caspase-3 and Bax, down-regulating the expression of Bcl-2, while markedly inhibit LPS or TNF-α-induced activation of NF-κB through both inhibiting the phosphorylation of IκBα and p65, and preventing the p65 nuclear translocation to exhibit both anti-hepatoma and anti-inflammatory activities. Molecular docking verified that simulated 96 can effectively bond to the active site of Bcl-2 and NF-κB/p65 proteins. 96 inhibited xenografts growth by reducing the expression of TNF-α and Bcl-2 in the tumour tissue. This study suggested that 96 could be developed as a potential multifunctional agent for treatment of inflammatory diseases and cancers.
Additional file 1 of The impact of regular school closure on seasonal influenza epidemics: a data-driven spatial transmission model for Belgium
Creators: name: Luca, Giancarlo
name: Kerckhove, Kim
name: Coletti, Pietro
name: Poletto, Chiara
name: Bossuyt, Nathalie
name: Niel Hens
name: Colizza, Vittoria
Publisher: name: figshare
Year: 2018
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Plant Biology
subject: Computational Biology

description: The Additional File provides additional details on the modeling approach, the calibration procedure, as well as additional validation results. (PDF 839 kb)
Behind the leaves -- Estimation of occluded grapevine berries with conditional generative adversarial networks
Creators: name: Kierdorf, Jana
name: Weber, Immanuel
name: Kicherer, Anna
name: Zabawa, Laura
name: Drees, Lukas
name: Roscher, Ribana
Publisher: name: arXiv
Year: 2021
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Machine Learning (cs.LG)
subject: Neural and Evolutionary Computing (cs.NE)
subject: FOS: Computer and information sciences

description: The need for accurate yield estimates for viticulture is becoming more important due to increasing competition in the wine market worldwide. One of the most promising methods to estimate the harvest is berry counting, as it can be approached non-destructively, and its process can be automated. In this article, we present a method that addresses the challenge of occluded berries with leaves to obtain a more accurate estimate of the number of berries that will enable a better estimate of the harvest. We use generative adversarial networks, a deep learning-based approach that generates a likely scenario behind the leaves exploiting learned patterns from images with non-occluded berries. Our experiments show that the estimate of the number of berries after applying our method is closer to the manually counted reference. In contrast to applying a factor to the berry count, our approach better adapts to local conditions by directly involving the appearance of the visible berries. Furthermore, we show that our approach can identify which areas in the image should be changed by adding new berries without explicitly requiring information about hidden areas.
description: 45 pages, 18 figures, 1 table
AFiD-GPU: a versatile Navier-Stokes Solver for Wall-Bounded Turbulent Flows on GPU Clusters
Creators: name: Zhu, Xiaojue
name: Phillips, Everett
name: Spandan, Vamsi
name: Donners, John
name: Ruetsch, Gregory
name: Romero, Josh
name: Ostilla-Mónico, Rodolfo
name: Yang, Yantao
name: Lohse, Detlef
name: Verzicco, Roberto
name: Fatica, Massimiliano
name: Stevens, Richard J. A. M.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: The AFiD code, an open source solver for the incompressible Navier-Stokes equations ({\color{blue}\burl{http://www.afid.eu}}), has been ported to GPU clusters to tackle large-scale wall-bounded turbulent flow simulations. The GPU porting has been carried out in CUDA Fortran with the extensive use of kernel loop directives (CUF kernels) in order to have a source code as close as possible to the original CPU version; just a few routines have been manually rewritten. A new transpose scheme, which is not limited to the GPU version only and can be generally applied to any CFD code that uses pencil distributed parallelization, has been devised to improve the scaling of the Poisson solver, the main bottleneck of incompressible solvers. The GPU version can reduce the wall clock time by an order of magnitude compared to the CPU version for large meshes. Due to the increased performance and efficient use of memory, the GPU version of AFiD can perform simulations in parameter ranges that are unprecedented in thermally-driven wall-bounded turbulence. To verify the accuracy of the code, turbulent Rayleigh-Bénard convection and plane Couette flow are simulated and the results are in good agreement with the experimental and computational data that published in previous literatures.
description: 33 pages, 8 figures, submitted
Additional file 1 of A prospective observational cohort study to identify inflammatory biomarkers for the diagnosis and prognosis of patients with sepsis
Creators: name: D’Onofrio, Valentino
name: Heylen, Dries
name: Pusparum, Murih
name: Grondman, Inge
name: Vanwalleghem, Johan
name: Meersman, Agnes
name: Cartuyvels, Reinoud
name: Messiaen, Peter
name: Joosten, Leo A. B.
name: Netea, Mihai G.
name: Valkenborg, Dirk
name: Ertaylan, Gökhan
name: Gyssens, Inge C.
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Mental Health
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. Additional methods, figures and tables.