cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 2 of Low expression of miR-182 caused by DNA hypermethylation accelerates acute lymphocyte leukemia development by targeting PBX3 and BCL2: miR-182 promoter methylation is a predictive marker for hypomethylation agents + BCL2 inhibitor venetoclax
Creators: name: Li, Danyang
name: Yuan, Yigang
name: Meng, Chen
name: Lin, Zihan
name: Zhao, Min
name: Shi, Liuzhi
name: Li, Min
name: Ye, Daijiao
name: Cai, Yue
name: He, Xiaofei
name: Ye, Haige
name: Zhou, Shujuan
name: Zhou, Haixia
name: Gao, Shenmeng
Publisher: name: figshare
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: Hematology
subject: Plant Biology
subject: Virology

description: Additional file 2. The sequences of primers for qRT-PCR and construction of plasmids.
Design and Implementation of a Blockchain-based Global Authentication System Using Biometrics and Subscriber Identification Module
Creators: name: Khalili, Navid
Publisher: name: Université d'Ottawa / University of Ottawa
Year: 2022
Subjects: Authentication
Electronic Governments
Smart Cities
Biometrics
SIM Card
Blockchain
Smartphones

description: The digital world tolerates a high volume of information and interactions. Considering the usage of electronic services by authorities, User Authentication (UA) is crucial. Numerous authentication methods are proposed in the literature; yet, identifying users based on their actual identities with the capability of global usage and respecting privacy is under research. By adopting Blockchain technology in the software industry, the record management systems have satisfied properties such as transparency, accountability, anonymity, and attack resiliency. Moreover, Smartphones are powerful devices capable of hosting a Subscriber Identification Module (SIM) Card that secures the execution of processes involving use of sensitive information. A combination of these technologies is the foundation of a strong UA in cyberspace. In this thesis, we propose the design and prototype of Blockchain-based Global Authentication System (BBGAS) that offers a secure, privacy-preserving, and transparent authentication system based on users' biometrics via Smartphones appropriate for service provider applications.
Cove-edged Chiral Graphene Nanoribbons with Chirality-Dependent Bandgap and Carrier Mobility
Creators: name: Liu, K.
name: Zheng, W.
name: Osella, S.
name: Qiu, Z.
name: Böckmann, S.
name: Niu, W.
name: Meingast, L.
name: Komber, H.
name: Obermann, S.
name: Gillen, R.
name: Bonn, M.
name: Hansen, M. R.
name: Maultzsch, J.
name: Wang, H. I.
name: Ma, J.
name: Feng, X.
Publisher: name: arXiv
Year: 2025
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Graphene nanoribbons (GNRs) have garnered significant interest due to their highly customizable physicochemical properties and potential utility in nanoelectronics. Besides controlling widths and edge structures, the inclusion of chirality in GNRs brings another dimension for fine-tuning their optoelectronic properties, but related studies remain elusive owing to the absence of feasible synthetic strategies. Here, we demonstrate a novel class of cove-edged chiral GNRs (CcGNRs) with a tunable chiral vector (n,m). Notably, the bandgap and effective mass of (n,2)- CcGNR show a distinct positive correlation with the increasing value of n, as indicated by theory. Within this GNR family, two representative members, namely, (4,2)- CcGNR and (6,2)-CcGNR, are successfully synthesized. Both CcGNRs exhibit prominently curved geometries arising from the incorporated [4]helicene motifs along their peripheries, as also evidenced by the single-crystal structures of the two respective model compounds (1 and 2). The chemical identities and optoelectronic properties of (4,2)- and (6,2)-CcGNRs are comprehensively investigated via a combination of IR, Raman, solid-state NMR, UV-vis, and THz spectroscopies as well as theoretical calculations. In line with theoretical expectation, the obtained (6,2)-CcGNR possesses a low optical bandgap of 1.37 eV along with charge carrier mobility of 8 cm2/Vs, whereas (4,2)-CcGNR exhibits a narrower bandgap of 1.26 eV with increased mobility of 14 cm2/Vs. This work opens up a new avenue to precisely engineer the bandgap and carrier mobility of GNRs by manipulating their chiral vector.
sj-docx-1-qjp-10.1177_17470218231219227 – Supplemental material for Does instructional intervention reduce the left digit effect in number line estimation?
Creators: name: Gwiazda, Gina
name: Kayton, Kelsey
name: Alia, Nicholas
name: Bondhus, Charlie
name: Barth, Hilary
name: Patalano, Andrea
Publisher: name: SAGE Journals
Year: 2023
Subjects: Psychology not elsewhere classified

description: Supplemental material, sj-docx-1-qjp-10.1177_17470218231219227 for Does instructional intervention reduce the left digit effect in number line estimation? by Gina Gwiazda, Kelsey Kayton, Nicholas Alia, Charlie Bondhus, Hilary Barth and Andrea Patalano in Quarterly Journal of Experimental Psychology
Additional file 3 of Low expression of miR-182 caused by DNA hypermethylation accelerates acute lymphocyte leukemia development by targeting PBX3 and BCL2: miR-182 promoter methylation is a predictive marker for hypomethylation agents + BCL2 inhibitor venetoclax
Creators: name: Li, Danyang
name: Yuan, Yigang
name: Meng, Chen
name: Lin, Zihan
name: Zhao, Min
name: Shi, Liuzhi
name: Li, Min
name: Ye, Daijiao
name: Cai, Yue
name: He, Xiaofei
name: Ye, Haige
name: Zhou, Shujuan
name: Zhou, Haixia
name: Gao, Shenmeng
Publisher: name: figshare
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: Hematology
subject: Plant Biology
subject: Virology

description: Additional file 3. Supplemental material and methods.
sj-docx-1-saj-10.1177_29767342231208823 – Supplemental material for Regional Variation in Opioid-Related Emergency Medical Services Transfers During the COVID-19 Pandemic: An Interrupted Time Series Analysis
Creators: name: Yazdanfard, Sahar
name: Thornton, Douglas
name: Bhatt, Prachet
name: Fatima, Bilqees
name: Khalid, Javeria
name: Song, Juhyeon
name: Varisco, Tyler Jordan
Publisher: name: SAGE Journals
Year: 2023
Subjects: Public Health and Health Services not elsewhere classified

description: Supplemental material, sj-docx-1-saj-10.1177_29767342231208823 for Regional Variation in Opioid-Related Emergency Medical Services Transfers During the COVID-19 Pandemic: An Interrupted Time Series Analysis by Sahar Yazdanfard, Douglas Thornton, Prachet Bhatt, Bilqees Fatima, Javeria Khalid, Juhyeon Song and Tyler Jordan Varisco in Substance Abuse
Hydatid cyst of thigh
Creators: name: BAN, AMIT
Publisher: name: EURORAD
Year: 2018
Subjects: subject: Musculoskeletal soft tissue
subject: CAD
subject: MR
subject: Ultrasound
subject: Contrast agent-intravenous
subject: Diagnostic procedure
subject: Surgery
subject: Cysts
subject: Infection
subject: Parasites

description: Clinical History Image Findings Discussion Find Diagnosis Differential Diagnosis
description: female, 30 years
description: Clinical History: A 30-year old female patient presented with swelling over anterior aspect of right thigh since last 3 months. Final Diagnosis: Hydatid disease of thigh
Reprise de la polka "La linotte"
Creators: name: Musée National Des Arts Et Traditions Populaires (Paris)
name: Centre D'ethnologie Française
Publisher: name: École des Hautes Études en Sciences Sociales; Institut  interdisciplinaire d'anthropologie du contemporain (Paris); Laboratoire d'anthropologie et d'histoire de l'institution de la culture (Paris)
Year: 2022

Abstract
Enhanced response at exceptional points in multi-qubit systems for sensing
Creators: name: Shi, Tingting
name: Smirnov, Vasilii
name: Shi, Kaiye
name: Zhang, Wei
Publisher: name: arXiv
Year: 2025
Subjects: subject: Quantum Physics (quant-ph)
subject: Atomic and Molecular Clusters (physics.atm-clus)
subject: FOS: Physical sciences

description: Exceptional points featuring enhanced energy response to perturbation hold significant potential in detection and measurement of weak signals. Of particular interest is the existence and property of high-order exceptional points in quantum systems, owing to the capability to provide high-order response to perturbations. We investigate the exceptional points in a system of $n$ identical qubits possessing parity-time-reversal symmetry. We prove that owing to an incomplete coalescence of eigenstates, the highest possible order of exceptional point is $n+1$, which is also the upper bound of the order of energy response to perturbation. More interestingly, by considering an Ising-type interaction, we analytically prove that to achieve an $(m+1)$-th order response for any $m \le n$, the system must acquire a nontrivial $m$-body interaction. Finally, we propose a Floquet driving scheme to implement an effective multi-body Ising-type interaction, which can be realized in trapped ions or superconducting qubits.
description: 9 pages, 4 figures
Vers l'Union économique et monétaire (1980-1988): la pression des faits, l’ambition politique
Creators: name: Allemand, Frédéric
Publisher: name: RESuME
Year: 2018
Subjects: subject: Economic and Monetary Union
subject: Union économique et monétaire
subject: Internal Market
subject: Marché intérieur
subject: Court of Justice of the European Union
subject: Cour de justice de l'Union européenne
subject: François Mitterrand
subject: Helmuth Kohl
subject: Plaza Accord
subject: Accord du Plaza
subject: Louvre Accord
subject: Accord du Louvre
subject: European Monetary System
subject: Système monétaire européen
subject: Jacques Delors
subject: Delors Report
subject: Rapport Delors

description: "[L'Union économique et monétaire] sera probablement, comme certains l'ont dit, le travail d'une génération [...]" observe avec dépit le président de la Commission, Gaston Thorn, à l'issue du Conseil européen de Luxembourg des 1er et 2 avril 1976. Dans le courant de la décennie 1980, ce pessimisme laisse place à l'optimisme avec le lancement d'un nouveau projet d'union économique et monétaire à compter du Conseil européen de Hanovre des 27 et 28 juin 1988.
sj-docx-1-saj-10.1177_29767342231212790 – Supplemental material for An Assessment of the One-Month Effectiveness of Telehealth Treatment for Opioid Use Disorder Using the Brief Addiction Monitor
Creators: name: Burke, Barbara
name: Clear, Brian
name: Rollston, Rebekah L.
name: Miller, Emily N.
name: Weiner, Scott G.
Publisher: name: SAGE Journals
Year: 2023
Subjects: Public Health and Health Services not elsewhere classified

description: Supplemental material, sj-docx-1-saj-10.1177_29767342231212790 for An Assessment of the One-Month Effectiveness of Telehealth Treatment for Opioid Use Disorder Using the Brief Addiction Monitor by Barbara Burke, Brian Clear, Rebekah L. Rollston, Emily N. Miller and Scott G. Weiner in Substance Abuse
title: Working together to protect children: a case study of policy implementation in Greece
Creators: name: Athanasiou, Helen
Publisher: name: London School of Economics and Political Science (LSE)
Year: 2016
Subjects: subject: H Social Sciences
subject: HN Social history and conditions. Social problems. Social reform

description: This is an exploratory case study aiming to describe the current state of the child protection system in Greece by examining both policy interventions and service responses targeted at all the stages of the phenomenon, ranging from detection and investigation to the provision of support or out of home care.
 This thesis is embedded in EU and international mandates for protecting children, embracing the Convention for the Rights of the Child as the starting point and value base of any developed, contemporary system designed to deal with this complex phenomenon. The main objective is to paint a picture of policy implementation in conjunction with front line interagency and multidisciplinary working. Data is collected and analysed in regards to all three levels; the macro, or policy level; the meso, or organisational/structural level and the micro, or frontline, professional, case specific, grassroots level.
 The researcher uses first-hand knowledge of the systems of both England and Greece in order to position Greece within the EU continuum of approaches based on the long-standing dilemma of support versus protection. As a result, the study concludes by offering suggestions on how to overcome barriers and improve the current situation in Greece so as to ensure that vulnerable children and their families receive appropriate and adequately designed services that would potentially enhance their life chances and enable better outcomes. This is achieved by distilling lessons to be learned from other more developed systems and adopting them to the Greek reality. This is an opportune moment for such a study as there is significant international movement towards convergence, which advocates unifying responses to such complex social phenomena and utilising international evidence of good practice.
The functional relationship between laughter, thrills and suspense in the comedy thriller screenplay: an inquiry into the writing of the comedy thriller
Creators: name: Rendell, Alvin
Publisher: name: RMIT University
Year: 2024

description: It is the aim of this study to inform the writing of a feature film screenplay that will blend the two film genres of comedy and thriller. In order to accomplish this, I examine the way both comedy and thriller genres achieve their specific aims. Though theorists have investigated the principles, conventions and techniques employed in the thriller and its many sub-genres, few have examined the blended comedy thriller genre beyond identifying it as a problematic form of the thriller. The lack of specific critical analysis of the comedy thriller genre represents a gap in the literature which I have attempted to fill.

Comedy thriller films are considered by many to be difficult to write. According to John Truby, the comedy thriller is problematic because ‘the comedy element sits uncomfortably with the tone required to generate chills and thrills’ (Truby, 2010).The screenwriter’s problem lies in the attempt to blend two contrasting audience states. Why do audiences laugh at a character’s pain in a comedy and yet flinch from it in a thriller?

In this study I examine the bodies of knowledge fundamental to the writing of a comedy thriller screenplay. These include the discipline areas of screenwriting, genre, psychology and theatre and performance. I also observe psychoanalytic theories that underpin the writer’s attempt to generate audience laughter and suspense thrills.

The outcomes of this study are a set of principles, conventions and techniques which may assist the screenwriter in blending the two genres of comedy and thriller without sacrificing the key emotional mandates of either - laughter and suspense. The insights gained from this study informed the writing of my own comedy thriller screenplay, Project Daybreak. My findings may also be useful to writers of theatre and popular literature who wish to explore the combining of dissimilar audience emotions in their creative works.
Shh, don't say that! Domain Certification in LLMs
Creators: name: Emde, Cornelius
name: Paren, Alasdair
name: Arvind, Preetham
name: Kayser, Maxime
name: Rainforth, Tom
name: Lukasiewicz, Thomas
name: Ghanem, Bernard
name: Torr, Philip H. S.
name: Bibi, Adel
Publisher: name: arXiv
Year: 2025
Subjects: subject: Computation and Language (cs.CL)
subject: Artificial Intelligence (cs.AI)
subject: Cryptography and Security (cs.CR)
subject: Machine Learning (cs.LG)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: Large language models (LLMs) are often deployed to perform constrained tasks, with narrow domains. For example, customer support bots can be built on top of LLMs, relying on their broad language understanding and capabilities to enhance performance. However, these LLMs are adversarially susceptible, potentially generating outputs outside the intended domain. To formalize, assess, and mitigate this risk, we introduce domain certification; a guarantee that accurately characterizes the out-of-domain behavior of language models. We then propose a simple yet effective approach, which we call VALID that provides adversarial bounds as a certificate. Finally, we evaluate our method across a diverse set of datasets, demonstrating that it yields meaningful certificates, which bound the probability of out-of-domain samples tightly with minimum penalty to refusal behavior.
description: 10 pages, includes appendix Published in International Conference on Learning Representations (ICLR) 2025
Air "Quand mon vieux grand-père mourra"
Creators: name: Musée National Des Arts Et Traditions Populaires (Paris)
name: Centre D'ethnologie Française
Publisher: name: École des Hautes Études en Sciences Sociales; Institut  interdisciplinaire d'anthropologie du contemporain (Paris); Laboratoire d'anthropologie et d'histoire de l'institution de la culture (Paris)
Year: 2022

Abstract
Efficient index maintenance for text databases
Creators: name: Lester, Nicholas
Publisher: name: RMIT University
Year: 2024

description: All practical text search systems use inverted indexes to quickly resolve user queries. Offline index construction algorithms, where queries are not accepted during construction, have been the subject of much prior research. As a result, current techniques can invert virtually unlimited amounts of text in limited main memory, making efficient use of both time and disk space. However, these algorithms assume that the collection does not change during the use of the index.

This thesis examines the task of index maintenance, the problem of adapting an inverted index to reflect changes in the collection it describes. Existing approaches to index maintenance are discussed, including proposed optimisations. We present analysis and empirical evidence suggesting that existing maintenance algorithms either scale poorly to large collections, or significantly degrade query resolution speed. In addition, we propose a new strategy for index maintenance that trades a strictly controlled amount of querying efficiency for greatly increased maintenance speed and scalability. Analysis and empirical results are presented that show that this new algorithm is a useful trade-off between indexing and querying efficiency. In scenarios described in Chapter 7, the use of the new maintenance algorithm reduces the time required to construct an index to under one sixth of the time taken by algorithms that maintain contiguous inverted lists.

In addition to work on index maintenance, we present a new technique for accumulator pruning during ranked query evaluation, as well as providing evidence that existing approaches are unsatisfactory for collections of large size. Accumulator pruning is a key problem in both querying efficiency and overall text search system efficiency. Existing approaches either fail to bound the memory footprint required for query evaluation, or suffer loss of retrieval accuracy. In contrast, the new pruning algorithm can be used to limit the memory footprint of ranked query evaluation, and in our experiments gives retrieval accuracy not worse than previous alternatives.

The results presented in this thesis are validated with robust experiments, which utilise collections of significant size, containing real data, and tested using appropriate numbers of real queries. The techniques presented in this thesis allow information retrieval applications to efficiently index and search changing collections, a task that has been historically problematic.
Information sur l'air "Quand mon vieux grand-père mourra"
Creators: name: Musée National Des Arts Et Traditions Populaires (Paris)
name: Centre D'ethnologie Française
Publisher: name: École des Hautes Études en Sciences Sociales; Institut  interdisciplinaire d'anthropologie du contemporain (Paris); Laboratoire d'anthropologie et d'histoire de l'institution de la culture (Paris)
Year: 2022

Abstract
Polka "La linotte"
Creators: name: Musée National Des Arts Et Traditions Populaires (Paris)
name: Centre D'ethnologie Française
Publisher: name: École des Hautes Études en Sciences Sociales; Institut  interdisciplinaire d'anthropologie du contemporain (Paris); Laboratoire d'anthropologie et d'histoire de l'institution de la culture (Paris)
Year: 2022

Abstract
Enterovirus infections are common in children at risk of Type 1 diabetes and associated with transient and persistent autoimmunity
Creators: name: Ammira Al-Shabeeb Akil
name: Rutty Talati
name: Catteau, Jackie
name: Sanderson, Kristy
name: Zin Naing
name: Rawlinson, William
name: Howard, Neville J.
name: Craig, Maria
Publisher: name: F1000Research
Year: 2017

description: Enteroviruses are members of the picornavirus family, a large and diverse group of small RNA viruses characterized by a single positive-strand genomic RNA. All enteroviruses contain a genome of approximately 7,500 bases.

The Human enterovirus  groups are: Human enterovirus A, B, C and  D. Type I diabetes mellitus (T1DM) results from autoimmune destruction of pancreatic islet β-cells. One of the T1DM hallmarks is The presence of islet cell associated autoantibodies (IAA, GADA, IA-2A and ICA) alone or in combination in over 90% of the cases.

The etiology of type I (Insulin-dependant) diabetes mellitus is multi-factorial, comprising both genetic and environmental factors. Environmental Risk factors include certain virus infections, dietary factors and certain genes such as HLA and IFIH1. The strongest infectious link to T1DM is enterovirus. Serological studies have indicated increased enterovirus Antibody levels in patients with type I diabetes, and enterovirus RNA has been detected in the blood of subjects with type I diabetes more frequently than the controls .

Of the few prospective studies in pre-diabetic individuals, there are conflicting results with regard to the association between EV infection and seroconversion to islet autoantibody.
Additional file 10 of Low expression of miR-182 caused by DNA hypermethylation accelerates acute lymphocyte leukemia development by targeting PBX3 and BCL2: miR-182 promoter methylation is a predictive marker for hypomethylation agents + BCL2 inhibitor venetoclax
Creators: name: Li, Danyang
name: Yuan, Yigang
name: Meng, Chen
name: Lin, Zihan
name: Zhao, Min
name: Shi, Liuzhi
name: Li, Min
name: Ye, Daijiao
name: Cai, Yue
name: He, Xiaofei
name: Ye, Haige
name: Zhou, Shujuan
name: Zhou, Haixia
name: Gao, Shenmeng
Publisher: name: figshare
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: Hematology
subject: Plant Biology
subject: Virology

description: Additional file 10. Limiting dilution assay of BCR-ABL (P190)-transduced 182WT and 182KO B-ALL mice.
G-OnRamp: Create UCSC assembly hubs and JBrowse/Apollo archives for collaborative eukaryotic genome annotations
Creators: name: Sargent, Luke
name: Yating Liu
name: Leung, Wilson
name: Elgin, Sarah
name: Goecks, Jeremy
Publisher: name: F1000 Research Limited
Year: 2018

description: Eukaryotic genomes are being sequenced at a rapid rate, but many bioinformatics analyses (e.g., RNA-Seq, ChIP-Seq) require high-quality genome annotations to produce meaningful biological results. Built on the Galaxy platform, G-OnRamp — a collaboration between Galaxy and the Genomics Education Partnership (GEP; http://gep.wustl.edu) — is a fully-provisioned production Galaxy server featuring tight integration among analysis tools, visualizations, and data management software and services to facilitate collaborative genome annotations.
G-OnRamp includes tools and workflows to create complementary evidence tracks for identifying protein-coding genes (via sequence similarity searches, ab initio gene predictions, RNA-Seq data), and repeats (via Tandem Repeats Finder and WindowMasker). These evidence tracks can be visualized on the UCSC Genome Browser (via Assembly Hubs), and on the JBrowse Genome Browser. G-OnRamp also provides Galaxy tools to import a JBrowse Genome Browser into Apollo and to manage Apollo users, thereby enabling web-based collaborative genome annotations in research and educational settings.

G-OnRamp is available as a VirtualBox virtual appliance and as an AMI image for local and cloud (Amazon EC2) deployments. A G-OnRamp instance includes a pre-configured Galaxy server with analysis tools and workflows, a locally-hosted Apollo server configured for the display and annotation of genomic data, and tools to orchestrate the interactions between Galaxy and Apollo. Integration with CyVerse (http://www.cyverse.org/), a national Cyberinfrastructure for Life Sciences research, provides researchers with free data storage for the datasets generated by G-OnRamp (via the CyVerse Data Store), thereby ensuring cost-effective long-term data management, access, and visualization. This integration is implemented using iRODS, open source data management software, which provides fine-grained access to the authentication, data manipulation, and storage infrastructure maintained by CyVerse. For researchers, G-OnRamp provides a stable, user-friendly, and ready-to-use analysis platform at the click of a button. For educators and students, G-OnRamp serves as a gentle introduction to “big data,” enabling faculty to engage students in group annotation projects, building students’ confidence in working with computers and large datasets common to biomedical analyses. Supported by NIH 1R25GM119157.
Variant calling on the GRCh38 assembly with the data from phase three of the 1000 Genomes
Creators: name: Lowy-Gallego, Ernesto
name: Fairley, Susan
name: Zheng-Bradley, Holly
name: Clarke, Laura
name: Flicek, Paul
Publisher: name: F1000 Research Limited
Year: 2018

description: The latest build of the human genome (GRCh38) constitutes the best representation of the human genome to date. GRCh38 has been adopted as the reference assembly and, to enable the research community to take full advantage of the improved reference, it is necessary for genomic resources to make their data available on this assembly.

The International Genome Sample Resource (IGSR) was established to ensure the ongoing usability of data generated by the 1000 Genomes Project and one of the main objectives is to move the data from phase three of the 1000 Genomes Project to GRCh38, including the development of the computational pipelines needed to achieve this and directly recall variants on GRCh38.

As a part of this work we have already mapped the 1000 Genomes sequence data to GRCh38 using the alt-aware BWA alignment algorithm. These alignments provide the foundation for generating variant calls directly on GRCh38.

We are using three established methods (BCFtools, Freebayes and GATK UnifiedGenotyper) to identify biallelic SNPs in the autosomes (chr1-22) and in the PAR regions for chrX. A consensus callset is being generated by the union of the sites from each callset and by the calculation of the genotype likelihoods for each site using GATK UnifiedGenotyper. We are then filtering the spurious variants using Variant Quality Score Recalibration (VQSR). The consensus approach enables us to take advantage of the strengths of each method and thus increase the sensitivity in the final callset.

The calculated genotype likelihoods are being integrated with microarray genotype data available on the same samples. These data are used to create a highly accurate haplotype scaffold by leveraging family information and then the sites in our consensus callset are phased onto this scaffold. This same strategy was used in the phase three of the 1000 Genomes Project and has been shown to produce low error rates for genotype calls.

We will release the biallelic SNP call set as soon as it is complete and plan thereafter to build on this work, increasing the range of samples in IGSR with variation calls generated directly against GRCh38.
"Publications" : annonce du garde-champêtre concernant la distribution du pain et du vin pour le 14 juillet
Creators: name: Musée National Des Arts Et Traditions Populaires (Paris)
name: Centre D'ethnologie Française
Publisher: name: École des Hautes Études en Sciences Sociales; Institut  interdisciplinaire d'anthropologie du contemporain (Paris); Laboratoire d'anthropologie et d'histoire de l'institution de la culture (Paris)
Year: 2022

Abstract
CAT-3DGS: A Context-Adaptive Triplane Approach to Rate-Distortion-Optimized 3DGS Compression
Creators: name: Zhan, Yu-Ting
name: Ho, Cheng-Yuan
name: Yang, Hebi
name: Chen, Yi-Hsin
name: Chiang, Jui Chiu
name: Liu, Yu-Lun
name: Peng, Wen-Hsiao
Publisher: name: arXiv
Year: 2025
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: 3D Gaussian Splatting (3DGS) has recently emerged as a promising 3D representation. Much research has been focused on reducing its storage requirements and memory footprint. However, the needs to compress and transmit the 3DGS representation to the remote side are overlooked. This new application calls for rate-distortion-optimized 3DGS compression. How to quantize and entropy encode sparse Gaussian primitives in the 3D space remains largely unexplored. Few early attempts resort to the hyperprior framework from learned image compression. But, they fail to utilize fully the inter and intra correlation inherent in Gaussian primitives. Built on ScaffoldGS, this work, termed CAT-3DGS, introduces a context-adaptive triplane approach to their rate-distortion-optimized coding. It features multi-scale triplanes, oriented according to the principal axes of Gaussian primitives in the 3D space, to capture their inter correlation (i.e. spatial correlation) for spatial autoregressive coding in the projected 2D planes. With these triplanes serving as the hyperprior, we further perform channel-wise autoregressive coding to leverage the intra correlation within each individual Gaussian primitive. Our CAT-3DGS incorporates a view frequency-aware masking mechanism. It actively skips from coding those Gaussian primitives that potentially have little impact on the rendering quality. When trained end-to-end to strike a good rate-distortion trade-off, our CAT-3DGS achieves the state-of-the-art compression performance on the commonly used real-world datasets.
description: Accepted for Publication in International Conference on Learning Representations (ICLR)
Additional file 1 of Variability of clinical practice in the care of the second stage of labor among midwives in Spain
Creators: name: Díaz, Estíbaliz Laderas
name: Rodriguez-Almagro, Julián
name: Martinez-Galiano, Juan Miguel
name: Rodríguez, Rafael Picón
name: Hernández-Martínez, Antonio
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: Supplementary Material 1
Drawn subject: meaning and the moving drawing
Creators: name: Williamson, Naomi
Publisher: name: RMIT University
Year: 2024

description: Using the vehicle of hand drawn animation, this is an ongoing reflection of instances that repeat themselves to a point beyond the humorous and back.

The Myth of Sisyphus

'The Gods had condemned Sisyphus to ceaselessly rolling a rock to the top of a mountain, whence the stone would fall back on its own weight. They had thought with some reason that there was no more dreadful punishment than futile and hopeless labour.'

Albert Camus- The Myth of Sisyphus

By observing and illustrating assiduous daily gestures and events our absurd hero is revealed: this protagonist, be it object or human consciously and often unconsciously lives within a relentless finite experience. As the same moment is duplicated, the "dreadful punishment" is uncovered as is a seemingly universal need to attach meaning to this experience, defying our punishment leading only to the discovery that this defiance renders us ridiculous. We recognise the metaphysical honour in enduring this absurdity. And not without humour.
Safe-haven properties of Cryptocurrencies following Shariah Compliance during the COVID-19 pandemic
Creators: name: Alghufaili, Eman
name: Prof. Buchanan, Bonnie
name: Dr. Eldabi, Tillal
Publisher: name: Zenodo
Year: 2022

description: Abstract During times of economic uncertainty, investors tend to secure their investments using safe-haven assets. Traditionally, assets such as gold have been viewed as safe-haven; however, the rising popularity of cryptocurrencies has led some researchers to consider their safe haven property effects against uncertainty as well. Though much of the focus in this domain has been on cryptocurrencies such as Bitcoin, shariah-compliant (SC) cryptocurrencies in the Muslim world have not received this attention. Muslim investors have considerable interest in considering cryptocurrencies for investment purposes, and with the rise of SC cryptocurrencies, this is now a possibility. Identifying and understanding the financial properties of cryptocurrencies are challenging and essential as references for investors, policymakers, researchers, and portfolio managers, as well as can be helpful for socio-economic sustainability. Therefore, studying SC cryptocurrencies and their safe-haven properties present an interesting study. Given the ongoing pandemic and high volatility in the global markets, it is essential to ascertain if SC cryptocurrencies provide an alternate form of a safe investment. Therefore, the aim of this study is to analyse the safe-haven properties of SC cryptocurrencies during the COVID-19 pandemic period. In studying the safe-haven properties of SC cryptocurrencies, this paper will contribute to the existing literature in a few ways. First, this paper will examine the safe-haven properties of SC cryptocurrencies using the new proxy of the global Covid-19 fear index. This will be the first time this proxy will be used to assess the safe-haven properties of SC cryptocurrencies. Second, the paper will utilise the wavelet coherence approach to study the variations in safe-haven properties across time and frequency during the COVID-19 pandemic. To the best of the author’s knowledge, this will be the first application of the wavelet coherence approach to study the safe-haven properties of SC cryptocurrency.
A Lightweight Unsupervised Approach for Adverse Health Detection and Digital Biomarker Discovery in People Living with Dementia
Creators: name: Bijlani, Nivedita
name: Kouchaki, Samaneh
Publisher: name: Zenodo
Year: 2022

description: Sensor-based remote health monitoring of persons living with dementia can be used to gain insights into their health and monitor the progression of their condition, with minimal intrusion. This helps minimize preventable hospital admissions. Existing approaches for detecting activity anomalies are challenged by several factors, such as lack of annotated datasets and interpretability. We propose and evaluate a solution based on the Matrix Profile, an ultra-fast distance-based anomaly detection algorithm, to detect unusual activity and onset of adverse health. Daily household movement data collected via passive infrared sensors are used to generate Contextual Matrix Profiles (CMPs), comparative maps of activity patterns aggregated by time. We create CMP-based multivariate anomaly detection models to generate a single daily normalized anomaly score for each patient and use these to discover digital biomarkers of anomalies. CMP-based models yield high sensitivity, low alert rate and excellent generalisation, when evaluated on data from 15 participant households collected by the UK Dementia Research Institute between August 2019 and July 2021. We have discovered early AM bathroom activity to be the prime cross-patient digital biomarker of urinary tract infections (UTI), which validates findings in literature that unusual bathroom activity is a clinically significant feature in UTI in dementia. To the best of our knowledge, our work is the first real-world study to adapt the CMP to continuous anomaly detection in healthcare. The CMP inherits the speed, accuracy and simplicity of the Matrix Profile. It provides configurability, ability to address noise in data, detect patterns, and easy explainability to clinical practitioners, along with better overall performance than state-of-the-art methods. It offers a clinically meaningful unsupervised anomaly detection technique not only for dementia, but also for wider healthcare, and other problem domains.
Additional file 2 of Variability of clinical practice in the care of the second stage of labor among midwives in Spain
Creators: name: Díaz, Estíbaliz Laderas
name: Rodriguez-Almagro, Julián
name: Martinez-Galiano, Juan Miguel
name: Rodríguez, Rafael Picón
name: Hernández-Martínez, Antonio
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: Supplementary Material 2
The ephemeral laboratory
Creators: name: Roberts, Lynda
Publisher: name: RMIT University
Year: 2024

description: The ‘Ephemeral Laboratory’ seeks to create a methodology for myself and other practitioners working within the field of ephemeral architecture.

It tests the proposition that a robust armature can be developed to act as a common methodological device in the design, curation and orchestration of a diverse range of temporal engagements with participants and other practitioners within a variety of public realms.

It explores how this framework might redefine the notion of authorship by exploring different models for creative collaboration within a range of contexts – with particular focus on establishing conditions that can encourage outcomes that are unexpected – often going beyond an author’s expectations.

This enquiry draws on my personal practice - a body of work which has departed from the conventional notion of architectural practice over the past ten years to include projects that cut across a range of scales: urban curation; education; design management; installation and social intervention.

Four key and distinct project areas and scales of operation have been identified and critically examined:
- Urban (City)
- Campus (Institution | Corporation)
- Room (Black Box | Gallery)
- Object (Making as Intervention)

Each project area reveals a different attribute of the proposed methodological framework by way of analysis and comparison, described via four sections or process stages: Audit; Strategy; Infrastructure; and Presented Outcome.
Additional file 1 of Real-world association between systemic corticosteroid exposure and complications in US patients with severe asthma
Creators: name: Casale, Thomas B
name: Corbridge, Thomas
name: Germain, Guillaume
name: Laliberté, François
name: MacKnight, Sean D
name: Boudreau, Julien
name: Duh, Mei S
name: Deb, Arijita
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Supplementary Material 1. Additional File 1: Supplementary Tables.docx
Chant "Quand mon vieux grand-père mourra"
Creators: name: Musée National Des Arts Et Traditions Populaires (Paris)
name: Centre D'ethnologie Française
Publisher: name: École des Hautes Études en Sciences Sociales; Institut  interdisciplinaire d'anthropologie du contemporain (Paris); Laboratoire d'anthropologie et d'histoire de l'institution de la culture (Paris)
Year: 2022

Abstract
Understanding the antecedents to project management best practice - lessons from aid relief projects
Creators: name: Steinfort, Paul
Publisher: name: RMIT University
Year: 2024

description: This study makes explicit assumptions that underpin sound PM practice that forms the required infrastructures for PM practice. It compares best PM practice with PM practice on distressed and troubled projects that takes place within the context of post-disaster relief projects where there is a notable absence of characteristics of required identified PM antecedents. It reviews traditional project management and international aid and development methodologies such as the ‘Logical Framework’, Project Cycle Management and Evaluation and looks at the best in each.

This research highlights a set of practices that may be universally applied in principal, with actual implementation dependent upon the project context. It also concludes that, if recognised, these contexts can be planned for and strategies and processes applied to minimise their disruptive influence and enable a positive outcome.

The understanding of the antecedents to project management was best understood through pragmatic action research, and within that, reflective practice and soft systems methodology in a structured, but open way and evaluated and then validated through rigorous cycles of research to objective outcomes. The methodologies and models that resolved this enabled sensible, workable, impacting outputs, both internally within practices and externally through different environments and contexts.
Unveiling the Dynamics in Galaxy Clusters: The Hidden Role of Low-Luminosity Galaxies in Coma
Creators: name: Costa, Alisson P.
name: Ribeiro, Andre. L. B.
name: Neto, Flavio R. de M.
name: Junior, Juarez dos S.
Publisher: name: arXiv
Year: 2025
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: In this work, we study the Coma cluster, one of the richest and most well-known systems at low redshifts, to explore the importance of low-flux objects in the identification of cluster substructures. In addition, we conduct a study of the infall flow around Coma, considering the presence or absence of low-flux objects across the projected phase space of the cluster. Our results indicate that low-luminosity galaxies play a fundamental role in understanding the dynamical state of galaxy clusters. These galaxies, often overlooked because of their faint nature, serve as sensitive tracers of substructure dynamics and provide crucial insights into the cluster's evolutionary history. We show that not considering the low-flux objects present in clusters can lead to significant underestimates of the numbers of substructures, both in most central parts, in the infall regions, and beyond, connecting to the large-scale structure up to a distance of approximately $8 R_{200}$ from the center of Coma.
description: 17 pages, 7 figures, accepted for publication in Universe
sj-docx-2-taj-10.1177_20406223231173628 – Supplemental material for Psychological morbidity and chronic cough: which is predominant? A comparison of clinical characteristics
Creators: name: Zhang, Tongyangzi
name: Wu, Heng
name: Li, Wanzhen
name: Cui, Xing
name: Zhu, Yiqing
name: Wang, Shengyuan
name: Shi, Wenbo
name: Wen, Siwan
name: Shi, Cuiqin
name: Xu, Xianghuai
name: Yu, Li
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: Cardiology
subject: Endocrinology
subject: Geriatrics and Gerontology
subject: Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: Aged Health Care
subject: Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: Psychology not elsewhere classified
subject: Psychiatry (incl. Psychotherapy)
subject: Respiratory Diseases

description: Supplemental material, sj-docx-2-taj-10.1177_20406223231173628 for Psychological morbidity and chronic cough: which is predominant? A comparison of clinical characteristics by Tongyangzi Zhang, Heng Wu, Wanzhen Li, Xing Cui, Yiqing Zhu, Shengyuan Wang, Wenbo Shi, Siwan Wen, Cuiqin Shi, Xianghuai Xu and Li Yu in Therapeutic Advances in Chronic Disease
A history of the Victorian women's domestic violence services movement, 1974-2005
Creators: name: Theobald, Jacqui
Publisher: name: RMIT University
Year: 2024

description: This thesis analyses the history of the Victorian women’s domestic violence services movement from 1974 through to a period of significant change in 2005. Whilst services provided accommodation to women and children in crisis, the refuge movement of the 1970s made explicit the link between what became known as domestic violence and the need for refuge. In a climate of international and national activism, and as a result of resolute advocacy and creative political campaigning, members of the movement made public what had otherwise been considered a private issue, and identified the ‘intolerable circumstances’ facing women in their intimate relationships as a reason for large numbers of women and children seeking emergency accommodation. Despite the tremendous gains made by the domestic violence services movement in both service development and social policy concerning domestic violence, there has been no comprehensive study of any state-based refuge movements in Australia. The primary aim of the thesis is, therefore, to document and historicise the refuge movement in Victoria in its social and political context. In doing so, it contributes to the task of recording the movement’s unequivocally political nature.

One of the principal objectives of this dissertation is to investigate the ideologies and actions of the women involved and make evident the influence of feminism and the contributions of community sector women’s organisations to service delivery, social policy and legislation concerning domestic violence. In doing so, the thesis also considers the ways that diverse organisations have worked together to achieve social change. As a result of the domestic violence services movement’s political activism and advocacy, domestic violence is now widely and publicly denounced, and this project is significant because it documents the strategies that were adopted in order to achieve this goal.

The thesis also investigates the relationship between the movement and external institutions. In particular, it considers the movement’s shifting, and at times productive as well as problematic, relationship with state institutions. By extension, it analyses the historical development of public policy as well as the current policy and organisational context relating to the domestic and family violence service sector.

This dissertation then, illuminates how the refuge movement in Victoria emerged, how members organised and worked towards achieving their goals, made sense of their experiences and dealt with the obstacles they encountered whilst undertaking action to create change for women. It also acknowledges that the history of the refuge movement is not a seamless one of ‘feminist’ success and ideas but rather a story of complex relationships, ideologies, identities and power struggles. However, the project will seek to acknowledge the diversity, ingenuity and resourcefulness of the activists and community-sector women’s organisations that made it happen.