Additional file 2: of Comprehensive analyses of the BES1 gene family in Brassica napus and examination of their evolutionary pattern in representative species
Creators: name: Song, Xiaoming
name: Ma, Xiao
name: Li, Chunjin
name: Hu, Jingjing
name: Yang, Qihang
name: Wang, Tong
name: Wang, Li
name: Wang, Jinpeng
name: Guo, Di
name: Ge, Weina
name: Wang, Zhenyi
name: Li, Miaomiao
name: Wang, Qiumei
name: Ren, Tianzeng
name: Feng, Shuyan
name: Wang, Lixia
name: Zhang, Weimeng
name: Wang, Xiyin
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Figure S2. The sequences of motif 1 to motif 10 of BES1 gene family among examined species. Figure S3. The conversed motifs (M1 to M10) analyses for each group using the MEME program. Figure S4. The sequences alignment of F1, F2, and F3 subgroups among examined species. The Glyco_hydro_14 domain contained in F1 and F2 subgroups is marked using the blue dashed box in F3 subgroup. Figure S5. The analyses of Glyco_hydro_14 domain, including (a) protein structure, (b) alignment with the homology model (1fa2.1.A), (c) prediction of local similarity to target, (d) comparison with non-redundant set of PDB structures. Figure S6. The analyses of orthologous BES1 genes between O. sativa and other examined species. (a) The interaction network constructed using the orthologous gene pairs between O. sativa and other species. (b) The number of orthologous genes in each species with 6 O. sativa BES1 genes. Figure S7. The analyses of orthologous BES1 genes between A. trichopoda and other examined species. (a) The interaction network constructed using the orthologous gene pairs between A. trichopoda and other species. (b) The number of orthologous genes in each species with 4 A. trichopoda BES1 genes. Figure S8. The analyses of orthologous BES1 genes between S. moellendorffii and other examined species. (a) The interaction network constructed using the orthologous gene pairs between S. moellendorffii and other species. (b) The number of orthologous genes in each species with 4Â S. moellendorffii BES1 genes. Figure S9. The analyses of orthologous BES1 genes between P. patens and other examined species. (a) The interaction network constructed using the orthologous gene pairs between P. patens and other species. (b) The number of orthologous genes in each species with 6 P. patens BES1 genes. Figure S10. The analyses of paralogous BES1 genes in each of the examined species. The green lines indicated the 4 B. napus BES1 genes, which had more than 1 paralogous genes. Figure S11. The reconstructed phylogenetic tree according to the duplication and losses of BES1 genes at different stages of plant evolution. Figure S12. The histogram of BES1 genes expression in root and leaf of B. napus. The genes marked with green located subgenome A, and red located subgenome C of B. napus. (PDF 4242 kb)