cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
On the CMB circular polarization. I. The Cotton-Mouton effect
Creators: name: Ejlli, Damian
Publisher: name: arXiv
Year: 2018
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Generation of cosmic microwave background (CMB) elliptic polarization due to the Cotton-Mouton (CM) effect in a cosmic magnetic field is studied. We concentrate on the generation of CMB circular polarization and on the rotation angle of the CMB polarization plane from the decoupling time until at present. For the first time, a rather detailed analysis of the CM effect for an arbitrary direction of the cosmic magnetic field with respect to photon direction of propagation is done. Considering the CMB linearly polarized at the decoupling time, it is shown that the CM effect is one of the most substantial effects in generating circular polarization especially in the low part of the CMB spectrum. It is shown that in the frequency range $10^8$ Hz $\leq ν_0\leq 10^9$ Hz, the degree of circular polarization of the CMB at present for perpendicular propagation with respect to the cosmic magnetic field is in the range $ 10^{-13}\lesssim P_C(t_0)\lesssim 7.65\times 10^{-7}$ or Stokes circular polarization parameter $2.7 \times 10^{-13}$ K $\lesssim |V(t_0)|\lesssim 2 \times 10^{-6}$ K for values of the cosmic magnetic field amplitude at present in the range $10^{-9}$ G $\lesssim B\lesssim 8\times 10^{-8}$ G. On the other hand, for not perpendicular propagation with respect to the cosmic magnetic field we find $10^{-15}\lesssim P_C(t_0)\lesssim 6\times 10^{-12}$ or $2.72 \times 10^{-15}$ K $\lesssim |V(t_0)| \lesssim 10^{-11}$ K, for the same values of the cosmic magnetic field amplitude and same frequency range. Estimates on the rotation angle of the CMB polarization plane $δψ_0$ due to the CM effect and constraints on the cosmic magnetic field amplitude from current constraints on $δψ_0$ due to a combination of the CM and Faraday effects are found.
description: Version published in European Physical Journal C. With respect to version (v1), in this version (v2) several typos have been corrected through the text. Unchanged results
Actions for signature change
Creators: name: Embacher, Franz
Publisher: name: arXiv
Year: 1995
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: This is a contribution on the controversy about junction conditions for classical signature change. The central issue in this debate is whether the extrinsic curvature on slices near the hypersurface of signature change has to be continuous ({\it weak} signature change) or to vanish ({\it strong} signature change). Led by a Lagrangian point of view, we write down eight candidate action functionals $S_1$,\dots $S_8$ as possible generalizations of general relativity and investigate to what extent each of these defines a sensible variational problem, and which junction condition is implied. Four of the actions involve an integration over the total manifold. A particular subtlety arises from the precise definition of the Einstein-Hilbert Lagrangian density $|g|^{1/2} R[g]$. The other four actions are constructed as sums of integrals over singe-signature domains. The result is that {\it both} types of junction conditions occur in different models, i.e. are based on different first principles, none of which can be claimed to represent the ''correct'' one, unless physical predictions are taken into account. From a point of view of naturality dictated by the variational formalism, {\it weak} signature change is slightly favoured over {\it strong} one, because it requires less {\it à priori} restrictions for the class of off-shell metrics. In addition, a proposal for the use of the Lagrangian framework in cosmology is made.
description: 36 pages, LaTeX, no figures; some corrections have been made, several Comments and further references are included and a note has been added.
Additional file 5 of Evaluating an app-guided self-test for influenza: lessons learned for improving the feasibility of study designs to evaluate self-tests for respiratory viruses
Creators: name: Zigman Suchsland, Monica L.
name: Rahmatullah, Ivan
name: Lutz, Barry
name: Lyon, Victoria
name: Huang, Shichu
name: Kline, Enos
name: Graham, Chelsey
name: Cooper, Shawna
name: Su, Philip
name: Smedinghoff, Sam
name: Chu, Helen Y.
name: Sewalk, Kara
name: Brownstein, John S.
name: Thompson, Matthew J.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Additional file 5. Self-reported symptom severity. Table of symptom severity broken out by symptom - N (%): Overall, PCR +, PCR –.
Slow neutron production as a probe of hadron formation in high-energy $γ^*A$ reactions
Creators: name: Larionov, A. B.
name: Strikman, M.
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: Nuclear Experiment (nucl-ex)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Deep Inelastic Scattering (DIS) experiments at the planned Electron-Ion Collider will be affected by details of the hadron formation inside the nuclear volume. Besides semi-inclusive particle production experiments decays of the target nucleus via emission of neutrons provide an additional opportunity to probe this domain. This paper reports on the hybrid dynamical+statistical calculations of low-energy neutron production in muon- and virtual photon-induced collisions with nuclei. We confirm the conclusion that the E665 data on neutron production in $μ^-$ + Pb DIS at 470 GeV indicate a strong suppression of the final state interaction for hadrons with momenta above $\sim 1$ GeV/c. Ultraperipheral heavy-ion collisions at the Large Hadron Collider (LHC) and the Relativistic Heavy Ion Collider (RHIC) can be used to test this suppression. The calculations of the neutron multiplicity distributions and $p_t$-spectra in photon - nucleus collisions at the energies accessible at the LHC and RHIC are presented for several models of hadron formation. We argue that studies of neutron production in ultraperipheral heavy ion collisions open a new window on the small-$x$ dynamics and hadron component of the photon wave function.
description: 34 pages, 10 figures, revised sec. 1 and 2, main results and conclusions unchanged, version accepted in Phys. Rev. C
Additional file 4 of Evaluating an app-guided self-test for influenza: lessons learned for improving the feasibility of study designs to evaluate self-tests for respiratory viruses
Creators: name: Zigman Suchsland, Monica L.
name: Rahmatullah, Ivan
name: Lutz, Barry
name: Lyon, Victoria
name: Huang, Shichu
name: Kline, Enos
name: Graham, Chelsey
name: Cooper, Shawna
name: Su, Philip
name: Smedinghoff, Sam
name: Chu, Helen Y.
name: Sewalk, Kara
name: Brownstein, John S.
name: Thompson, Matthew J.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Additional file 4. Count of symptoms among participants with and without influenza. Table of number of symptom - N (%): Overall, PCR +, PCR –.
Magnets with strong geometric frustration
Creators: name: Moessner, R.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: A non-technical introduction to the theory of magnets with strong geometric frustration is given, concentrating on magnets on corner-sharing (kagome, pyrochlore, SCGO and GGG) lattices. Their rich behaviour is traced back to a large ground-state degeneracy in model systems, which renders them highly unstable towards perturbations. A systematic classification according to properties of their ground states is discussed. Other topics addressed in this overview article include a general theoretical framework for thermal order by disorder; the dynamics of how the vast regions of phase space accessible at low temperature are explored; the origin of the featureless magnetic susceptibility fingerprint of geometric frustration; the role of perturbations; and spin ice. The rich field of quantum frustrated magnets is also touched on.
description: Key-note theory talk of Conference on Highly Frustrated Magnetism (HFM-2000) in Waterloo, Canada, June 2000; 8 pages
title: Four-body atomic potential for modeling protein-ligand binding affinity: application to enzyme-inhibitor binding energy prediction
Creators: name: Masso, Majid
Publisher: name: BioMed Central
Year: 2013
Subjects: subject: Protein-ligand complexes
subject: Delaunay tessellation
subject: Structure-guided drug design
subject: Computational models

description: Background : Models that are capable of reliably predicting binding affinities for protein-ligand complexes play an important role the field of structure-guided drug design. Methods : Here, we begin by applying the computational geometry technique of Delaunay tessellation to each set of atomic coordinates for over 1400 diverse macromolecular structures, for the purpose of deriving a four-body statistical potential that serves as a topological scoring function. Next, we identify a second, independent set of three hundred protein-ligand complexes, having both high-resolution structures and known dissociation constants. Two-thirds of these complexes are randomly selected to train a predictive model of binding affinity as follows: two tessellations are generated in each case, one for the entire complex and another strictly for the isolated protein without its bound ligand, and a topological score is computed for each tessellation with the four-body potential. Predicted protein-ligand binding affinity is then based on an empirically derived linear function of the difference between both topological scores, one that appropriately scales the value of this difference. Results : A comparison between experimental and calculated binding affinity values over the two hundred complexes reveals a Pearson's correlation coefficient of r = 0.79 with a standard error of SE = 1.98 kcal/mol. To validate the method, we similarly generated two tessellations for each of the remaining protein-ligand complexes, computed their topological scores and the difference between the two scores for each complex, and applied the previously derived linear transformation of this topological score difference to predict binding affinities. For these one hundred complexes, we again observe a correlation of r = 0.79 (SE = 1.93 kcal/mol) between known and calculated binding affinities. Applying our model to an independent test set of high-resolution structures for three hundred diverse enzyme-inhibitor complexes, each with an experimentally known inhibition constant, also yields a correlation of r = 0.79 (SE = 2.39 kcal/mol) between experimental and calculated binding energies. Conclusions : Lastly, we generate predictions with our model on a diverse test set of one hundred protein-ligand complexes previously used to benchmark 15 related methods, and our correlation of r = 0.66 between the calculated and experimental binding energies for this dataset exceeds those of the other approaches. Compared with these related prediction methods, our approach stands out based on salient features that include the reliability of our model, combined with the rapidity of the generated predictions, which are less than one second for an average sized complex.
Weak localization in the 2D metallic regime of Si-MOS
Creators: name: Brunthaler, G.
name: Prinz, A.
name: Bauer, G.
name: Pudalov, V. M.
name: Dizhur, E. M.
name: Jaroszynski, J.
name: Glod, P.
name: Dietl, T.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: The negative magnetoresistance due to weak localization is investigated in the two-dimensional metallic state of Si-MOS structures for high conductance values between 35 and 120 e^2/h. The extracted phase coherence time is equal to the momentum relaxation time at 10 K but nearly 100 times longer at the lowest temperature. Nevertheless, only weak logarithmic corrections to the conductivity are present in the investigated temperature and concentration range thus proving the absence of strong quantum effects due to electron-electron interaction. From saturation effects of the phase coherence time a lower boundary for spin-orbit scattering of about 200 ps is estimated.
description: 4 pages, 3 figures, Conf. on "Localization: Disorder and Interaction in Transport Phenomena" July 29 - August 2, 1999, Hamburg, Germany
Pseudictyota dubium Sims & Williams
Creators: name: Joh, Gyeongje
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Chromista
Ochrophyta
Bacillariophyceae
Triceratiales
Triceratiaceae
Pseudictyota
Pseudictyota dubium

description: 18. Pseudictyota dubium (Brightwell) Sims & Williams (Figs 2–4, 182, 183)
 Synonym: Triceratium dubium Brightwell; Biddulphia dubia (Brightwell) Cleve; Odontella dubia (Brightwell) Chavez & Baumgartner.
 Type locality: Mauritius.
 References: Hustedt 1927 –1930, p. 806, fig. 469; Podzorski & Håkansson 1987, p. 29, pl. 5, figs 5, 7; Witkowski et al. 2000, p. 42, pl. 8, figs 4, 5; Fernandes & de Souza-Mosimann 2001, p.161, figs 22–36; Sims et al. 2018, pl. 37, figs 133–138.
 Morphometrics: Valves 30–34 μm long apically, 25–29 (20–100) μm in side length, 31–32 μm wide transapically, areolae on a stria 4–5 (4–5) in 10 μm.
 Remarks: Pseudictyota dubium is distributed in the littoral waters of warmer oceans and in the southern region of Europe (Hustedt 1927 –1930). This taxon has been reported from many places: Heron Island and port Hacking in Australia (Crosby & Wood 1958), Palawan of Philippines (Podzorski & Håkansson 1987), the Tavares River mangrove of Brazil (Felício-Fernandes et al. 1994), Paranaguá Bay of southern Brazil (Fernandes & Souza-Mosimann 2001), Yap and Guam in the western Pacific Ocean (Navarro & Lobban 2009, Theriot et al. 2010), Galapagos Islands (Stidolph et al. 2012), and Red Sea (Gerasimiuk & Kovtun 2014). In addition, it is mentioned on the phytoplankton check-list near Vero Beach of Florida (Mahoney & Gibson 1983), and that of the Caribbean Sea (Navarro & Hernández-Becerril 1997), and is widespread on warmer coasts. It was collected from the islands in the northern Yellow Sea of South Korea (Lee et al. 2015), and currently encountered infrequently as an epiphyte along the Seogwipo coast in Jeju Island.
description: Published as part of Joh, Gyeongje, 2021, Distribution and frequent occurrence of diatom taxa (Bacillariophyta) inhabiting warmer oceans in Seogwipo coast of Jeju Island, southernmost Korea, pp. 1-67 in Phytotaxa 517 (1) on page 16, DOI: 10.11646/phytotaxa.517.1.1, http://zenodo.org/record/8061058
Additional file 3 of Evaluating an app-guided self-test for influenza: lessons learned for improving the feasibility of study designs to evaluate self-tests for respiratory viruses
Creators: name: Zigman Suchsland, Monica L.
name: Rahmatullah, Ivan
name: Lutz, Barry
name: Lyon, Victoria
name: Huang, Shichu
name: Kline, Enos
name: Graham, Chelsey
name: Cooper, Shawna
name: Su, Philip
name: Smedinghoff, Sam
name: Chu, Helen Y.
name: Sewalk, Kara
name: Brownstein, John S.
name: Thompson, Matthew J.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Additional file 3. Recruitment sources of study participants. Table of recruitment sources - N (%): Overall, PCR +, PCR –.
Real-time High-Resolution Mid-infrared Optical Coherence Tomography
Creators: name: Israelsen, Niels M.
name: Petersen, Christian R.
name: Barh, Ajanta
name: Jain, Deepak
name: Jensen, Mikkel
name: Hannesschläger, Günther
name: Tidemand-Lichtenberg, Peter
name: Pedersen, Christian
name: Podoleanu, Adrian
name: Bang, Ole
Publisher: name: arXiv
Year: 2018
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: The potential for improving the penetration depth of optical coherence tomography systems by using increasingly longer wavelength light sources has been known since the inception of the technique in the early 1990s. Nevertheless, the development of mid-infrared optical coherence tomography has long been challenged by the maturity and fidelity of optical components in this spectral region, resulting in slow acquisition, low sensitivity, and poor axial resolution. In this work, a mid-infrared spectral-domain optical coherence tomography system operating at 4 micron central wavelength with an axial resolution of 8.6 microns is demonstrated. The system produces 2D cross-sectional images in real-time enabled by a high-brightness 0.9-4.7 micron mid-infrared supercontinuum source with 1 MHz pulse repetition rate for illumination and broadband upconversion of more than 1 micron bandwidth from 3.58-4.63 microns to 820-865 nm, where a standard 800 nm spectrometer can be used for fast detection. Images produced by the mid-infrared system are compared with those delivered by a state-of-the-art ultra-high-resolution near-infrared optical coherence tomography system operating at 1.3 μm, and the potential applications and samples suited for this technology are discussed. In doing so, the first practical mid-infrared optical coherence tomography system is demonstrated, with immediate applications in real-time non-destructive testing for the inspection of defects and thickness measurements in samples that are too highly scattering at shorter wavelengths.
Additional file 6: of Liver DNA methylation of FADS2 associates with FADS2 genotypex
Creators: name: Walle, Paula
name: Männistö, Ville
name: Mello, Vanessa
name: Vaittinen, Maija
name: Perfilyev, Alexander
name: Hanhineva, Kati
name: Ling, Charlotte
name: Pihlajamäki, Jussi
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 60506 Virology

description: Association between liver histology and DNA methylation of CpG sites annotated to FADS2 and FADS1. (DOCX 29 kb)
QCD Corrections to Associated Higgs Boson Production
Creators: name: Dawson, S.
name: Reina, L.
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We compute QCD corrections to the processes $e^+e^-\to t \bar t h^0$ and $pp\to t \bar t h^0$ by treating the Higgs boson as a parton which radiates off a heavy quark. This approximatiion is valid in the limits $M_h<
description: 18 pages, latex2e
Additional file 2 of A retrospective study on Xpert MTB/RIF for detection of tuberculosis in a teaching hospital in China
Creators: name: Li, Shuguang
name: Lin, Liyan
name: Zhang, Feifei
name: Zhao, Chunjiang
name: Meng, Han
name: Wang, Hui
Publisher: name: figshare
Year: 2020
Subjects: Biophysics
Biochemistry
Molecular Biology
Biological Sciences not elsewhere classified
Cancer
Science Policy

description: Additional file 2: Table S1. Age and gender information of the patients in this study.
title: ADCO, Cartulaire de Cîteaux pour le prieuré de Gilly : rachat de la rente due à Saint-Germain-des-Prés (c. 1501), Cart. 194 (11 H 636), 64 folios, f. 0109
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2015
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Cartulaire de Cîteaux pour le prieuré de Gilly : rachat de la rente due à Saint-Germain-des-Prés (c. 1501), Archives départementales de la Côte-d'Or, Cart. 194 (11 H 636), 64 folios, f. 0109, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de Cîteaux pour le prieuré de Gilly : rachat de la rente due à Saint-Germain-des-Prés (c. 1501), Archives départementales de la Côte-d'Or, Cart. 194 (11 H 636), 64 folios, f. 0109, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Additional file 2 of Evaluating an app-guided self-test for influenza: lessons learned for improving the feasibility of study designs to evaluate self-tests for respiratory viruses
Creators: name: Zigman Suchsland, Monica L.
name: Rahmatullah, Ivan
name: Lutz, Barry
name: Lyon, Victoria
name: Huang, Shichu
name: Kline, Enos
name: Graham, Chelsey
name: Cooper, Shawna
name: Su, Philip
name: Smedinghoff, Sam
name: Chu, Helen Y.
name: Sewalk, Kara
name: Brownstein, John S.
name: Thompson, Matthew J.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Additional file 2. Study Questionnaire.
Additional file 7: of Liver DNA methylation of FADS2 associates with FADS2 genotypex
Creators: name: Walle, Paula
name: Männistö, Ville
name: Mello, Vanessa
name: Vaittinen, Maija
name: Perfilyev, Alexander
name: Hanhineva, Kati
name: Ling, Charlotte
name: Pihlajamäki, Jussi
Publisher: name: figshare
Year: 2019
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology

description: Characteristics of the groups based on erythrocyte folate. (DOCX 27 kb)
QCD Anatomy of B -> X_s gamma Decays
Creators: name: Kagan, A. L.
name: Neubert, M.
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We present an updated next-to-leading order analysis of the B -> X_s gamma branching ratio and photon spectrum, including consistently the effects of Fermi motion in the heavy-quark expansion. For the Standard Model, we obtain B(B -> X_s gamma) = (2.57+-0.26^{+0.31}_{-0.36}) * 10^{-4} for the integral over the high-energy part of the photon spectrum with E_gamma^{lab} > 2.2 GeV, where the first error reflects the uncertainty in the input parameters, and the second one the uncertainty in the calculation of Fermi motion. This prediction agrees with the CLEO measurement of the same quantity within one standard deviation. From a reanalysis of the CLEO data, we obtain for the total branching ratio B(B -> X_s gamma) = (2.62+-0.60_{exp}^{+0.37}^{-0.30{th}}) * 10^{-4} using the measured rate above 2.2 GeV, and (2.66+-0.56_{exp}^{+0.43}_{-0.48{th}}) * 10^{-4} using a fit to the photon energy spectrum. Both values are consistent with the Standard Model prediction of (3.29+-0.33) * 10^{-4}. Our analysis contains an improved discussion of renormalization scale dependence and QED corrections. We also discuss the sensitivity of the branching ratio and photon spectrum to hadronic parameters such as the b-quark mass, and to possible contributions from New Physics beyond the Standard Model.
description: 41 pages, 10 figures. QED anomalous dimension matrix corrected, numerical results unchanged, reference added. Version to be published in European Physical Journal
title: Building Knowledge Across the Curriculum: Utilizing the Learning Community Model to Maximize Relevant Information Literacy Instruction
Creators: name: Hogan, Laura
name: Brown, Emily
Publisher: name: University of Massachusetts Amherst
Year: 2023
Subjects: subject: Teaching and Learning
subject: Library and Information Science

description: This session will focus on the collaborative efforts of the librarians at this Community College and their proposed course in information literacy designed to teach research methods within specific majors. The course was created to act as a sort of foundational course in the disciplines that will focus on research methods utilized in those academic areas. For example, the course could be paired with a foundational sociology course and would focus on the research methods in that field. Or, it could be paired with a history course, where students would learn research methods in that field. The course would include bringing in the college writing center in order to teach students to write within their chosen field, as well as feature guest lecturers who have conducted research and can ask questions about interviewing, data collection, and other facets of research. The course is based on the High Impact Practice (HIP) of a learning community. The course will be offered as part of the required college first-year curriculum but will specifically be tailored to declared majors. The course, as a part of a learning community, would teach to the research assignments that are assigned in its partner course. In doing so, the students will be able to gain the research skills and support required to complete assigned research assignments.
Deep Unfolding of a Proximal Interior Point Method for Image Restoration
Creators: name: Bertocchi, Carla
name: Chouzenoux, Emilie
name: Corbineau, Marie-Caroline
name: Pesquet, Jean-Christophe
name: Prato, Marco
Publisher: name: arXiv
Year: 2018
Subjects: subject: Optimization and Control (math.OC)
subject: Machine Learning (cs.LG)
subject: FOS: Mathematics
subject: FOS: Computer and information sciences

description: Variational methods are widely applied to ill-posed inverse problems for they have the ability to embed prior knowledge about the solution. However, the level of performance of these methods significantly depends on a set of parameters, which can be estimated through computationally expensive and time-consuming methods. In contrast, deep learning offers very generic and efficient architectures, at the expense of explainability, since it is often used as a black-box, without any fine control over its output. Deep unfolding provides a convenient approach to combine variational-based and deep learning approaches. Starting from a variational formulation for image restoration, we develop iRestNet, a neural network architecture obtained by unfolding a proximal interior point algorithm. Hard constraints, encoding desirable properties for the restored image, are incorporated into the network thanks to a logarithmic barrier, while the barrier parameter, the stepsize, and the penalization weight are learned by the network. We derive explicit expressions for the gradient of the proximity operator for various choices of constraints, which allows training iRestNet with gradient descent and backpropagation. In addition, we provide theoretical results regarding the stability of the network for a common inverse problem example. Numerical experiments on image deblurring problems show that the proposed approach compares favorably with both state-of-the-art variational and machine learning methods in terms of image quality.
Pseudictyota reticulata Sims & Williams
Creators: name: Joh, Gyeongje
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Chromista
Ochrophyta
Bacillariophyceae
Triceratiales
Triceratiaceae
Pseudictyota
Pseudictyota reticulata

description: 19. Pseudictyota reticulata (Roper) Sims & Williams (Figs 12, 18, 19, 180, 181)
 Basionym: Biddulphia reticulata Roper.
 Synonym: Triceratium dictyotum (Roper) Sims & Ross.
 Syntype localities: Trincomalee, Sri Lanka; Natal, South Africa; New Zealand.
 Reference: Lobban et al. 2012, p. 250, pl. 6, figs 3, 4;
 Morphometrics: Valves 69–122 (70–132) μm long, 40–66 (35–82) μm wide, and areolae 3–4 in 10 μm.
 Remarks: Valves are bipolar, and rimoportulae with long external tubes near the base of the ocelli are characteristic of this taxon (Lobban et al. 2012). Pseudictyota reticulata has been reported from some islands of the Pacific Ocean (Ricard 1977, Foged 1987, Lobban et al 2012), and from the Caribbean Sea (Navarro 1981), southern China and Taiwan (Li 1978, Jin et al. 1985), in addition to Thursday Island of Queensland in Australia, New Hebrides, and Philippines (Sims et al. 2018). Based on its distribution, it is considered as a taxon preferring warmer marine water. It is encountered frequently as an epiphyte on seaweeds in the Seogwipo coast, representing a new record for South Korea.
description: Published as part of Joh, Gyeongje, 2021, Distribution and frequent occurrence of diatom taxa (Bacillariophyta) inhabiting warmer oceans in Seogwipo coast of Jeju Island, southernmost Korea, pp. 1-67 in Phytotaxa 517 (1) on pages 16-18, DOI: 10.11646/phytotaxa.517.1.1, http://zenodo.org/record/8061058
Extensive eigenvalues in spin-spin correlations: a tool for counting pure states in Ising spin glasses
Creators: name: Sinova, Jairo
name: Canright, Geoff
name: Castillo, Horacio E.
name: MacDonald, Allan H.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: We study the nature of the broken ergodicity in the low temperature phase of Ising spin glass systems, using as a diagnostic tool the spectrum of eigenvalues of the spin-spin correlation function. We show that multiple extensive eigenvalues of the correlation matrix $C_{ij}\equiv< S_i S_j>$ occur if and only if there is replica symmetry breaking. We support our arguments with Exchange Monte-Carlo results for the infinite-range problem. Here we find multiple extensive eigenvalues in the RSB phase for $N \agt 200$, but only a single extensive eigenvalue for phases with long-range order but no RSB. Numerical results for the short range model in four spatial dimensions, for $N\le 1296$, are consistent with the presence of a single extensive eigenvalue, with the subdominant eigenvalue behaving in agreement with expectations derived from the droplet model. Because of the small system sizes we cannot exclude the possibility of replica symmetry breaking with finite size corrections in this regime.
description: 14 pages, 7 figures, submitted to PRB
Additional file 1: of The subject-dependent, cumulative, and recency association of aerobic fitness with academic performance in Taiwanese junior high school students
Creators: name: Shu-Shih Hsieh
name: Tsai, Jia-Ren
name: Shao-Hsi Chang
name: Jen-Yu Ho
name: Jui-Fu Chen
name: Po-Hsi Chen
name: Sung, Yao-Ting
name: Tsung-Min Hung
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: Supplementary file Age- and sex-adjusted norms of BMI in Taiwanese students. (DOC 37 kb)
Gravitational Constraints which Generate a Lie Algebra
Creators: name: Kuchar, Karel V.
name: Romano, Joseph D.
Publisher: name: arXiv
Year: 1995
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: The coupling of gravity to dust helps to discover simple quadratic combinations of the gravitational super-Hamiltonian and supermomentum whose Poisson brackets strongly vanish. This leads to a new form of vacuum constraints which generate a true Lie algebra. We show that the coupling of gravity to a massless scalar field leads to yet another set of constraints with the same property, albeit not as simple as that based on the coupling to dust.
description: 10 pages, latex file, no figures
Additional file 1 of Evaluating an app-guided self-test for influenza: lessons learned for improving the feasibility of study designs to evaluate self-tests for respiratory viruses
Creators: name: Zigman Suchsland, Monica L.
name: Rahmatullah, Ivan
name: Lutz, Barry
name: Lyon, Victoria
name: Huang, Shichu
name: Kline, Enos
name: Graham, Chelsey
name: Cooper, Shawna
name: Su, Philip
name: Smedinghoff, Sam
name: Chu, Helen Y.
name: Sewalk, Kara
name: Brownstein, John S.
name: Thompson, Matthew J.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Additional file 1. Description of Audere, app design and operation.
Clean CKM Information from Bd(t) -> D(*)+/- pi-/+
Creators: name: Dunietz, Isard
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: It has been known for many years that the Bd(t) -> D(*)+/- {pi-/+, rho-/+, a1-/+} modes may involve observable CP violating effects. This note describes how to determine cleanly the Cabibbo-Kobayashi-Maskawa (CKM) phase phi = -2 beta - gamma = -pi + alpha - beta, even in the presence of possible final state interactions. A discrete ambiguity remains.
description: 8 pages, revtex
Bivariant and extended Sylvester rank functions
Creators: name: Li, Hanfeng
Publisher: name: arXiv
Year: 2019
Subjects: subject: Rings and Algebras (math.RA)
subject: Operator Algebras (math.OA)
subject: FOS: Mathematics

description: For a unital ring R, a Sylvester rank function is a numerical invariant which can be described in 3 equivalent ways: on finitely presented left R-modules, or on rectangular matrices over R, or on maps between finitely generated projective left R-modules. We extend each Sylvester rank function to all pairs of left R-modules $M_1\subseteq M_2$, and to all maps between left R-modules satisfying suitable properties including continuity and additivity. As an application, we show that for any epimorphism $R\rightarrow S$ of unital rings, the pull-back map from the set of Sylvester rank functions of S to that of R is injective. We also give a new proof of Schofield's result describing the image of this map when S is the universal localization of R inverting a set of maps between finitely generated projective left R-modules.
description: A proof of Lemma 3.12 is added. 33 pages. J. Lond. Math. Soc. to appear
Additional file 4: of Nature of selection varies on different domains of IFI16-like PYHIN genes in ruminants
Creators: name: Kumar, Sushil
name: Chera, Jatinder
name: Vats, Ashutosh
name: Sachinandan De
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Multiple sequence alignments of (a) PYD domain, (b) inter-domain and (c) HIN domain. (DOCX 101 kb)
title: Lettre de Jacques Leibowitch à Maître Inchauspe
Creators: name: Leibowitch, Jacques
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020

description: 3 exemplaires.
description: Source: http://www.calames.abes.fr/pub/ms/Calames-2019311113419094
title: ADCO, Cartulaire de l'abbaye de Cîteaux dit Cartulare Antiquum t.1 (début XIIIe siècle), Cart. 166 (11 H 64), 136 folios, f. 0029v
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Cartulaire de l'abbaye de Cîteaux dit Cartulare Antiquum t.1 (début XIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 166 (11 H 64), 136 folios, f. 0029v, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de l'abbaye de Cîteaux dit Cartulare Antiquum t.1 (début XIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 166 (11 H 64), 136 folios, f. 0029v, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Leudugeria janischii Tempere
Creators: name: Joh, Gyeongje
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Chromista
Ochrophyta
Bacillariophyceae
Biddulphiales
Biddulphiaceae
Leudugeria
Leudugeria janischii

description: 20. Leudugeria janischii (Grunow) Tempère (Figs 26–28, 185, 186)
 Basionym: Euodia janischii Grunow in Van Heurck.
 Synonym: Eunotiopsis janischii Grunow in Cleve & M̂ller.
 Type locality: not given.
 Reference: Van Heurck 1896, p. 539, fig. 287.
 Morphometrics: Valves 56–266 μm long, 29–33 μm wide, transapical striae on valves, 1.4–2.6 in 10 μm, areolae on a stria, large and 1.3–1.7 in 10 μm, and striae and areolae on mantle, 6.4 and 7.8 in 10 μm, respectively.
 Remarks: It was reported that this taxon is distributed in Japan, China, Ceylon (Sri Lanka), Australia, the Seychelles, the Galapagos Island, and as fossil diatoms in Sta. Monica in California (Van Heurck 1896, Leuduger-Fortmorel 1898), but has not been discovered since then. However, there are a report that it occurred in Saba Island of Netherlands Antilles in the Caribbean Sea (Stancheva & Deheyn 2010). Only one species in the genus, but recently a new species, Leudugeria thermalis Stancheva & Deheyn which is a closely similar to L. janischii, was erected (Stancheva & Deheyn 2010). This taxon is rare as an epiphyte on rock pools along the Seogwipo coast in Jeju Island, and representing a new record for South Kora.
description: Published as part of Joh, Gyeongje, 2021, Distribution and frequent occurrence of diatom taxa (Bacillariophyta) inhabiting warmer oceans in Seogwipo coast of Jeju Island, southernmost Korea, pp. 1-67 in Phytotaxa 517 (1) on page 18, DOI: 10.11646/phytotaxa.517.1.1, http://zenodo.org/record/8061058
Additional file 10 of Evaluating an app-guided self-test for influenza: lessons learned for improving the feasibility of study designs to evaluate self-tests for respiratory viruses
Creators: name: Zigman Suchsland, Monica L.
name: Rahmatullah, Ivan
name: Lutz, Barry
name: Lyon, Victoria
name: Huang, Shichu
name: Kline, Enos
name: Graham, Chelsey
name: Cooper, Shawna
name: Su, Philip
name: Smedinghoff, Sam
name: Chu, Helen Y.
name: Sewalk, Kara
name: Brownstein, John S.
name: Thompson, Matthew J.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Additional file 10. Secondary diagnostic accuracy analysis. 3 Tables: Accuracy of user interpreted self-test and Expert interpreted self-test results removing samples with discolored UTM fluid; Accuracy of user interpreted self-test and Expert interpreted self-test results with a subset of participants that took the test between 0 and 4 days of ordering it; Accuracy of user interpreted self-test and Expert interpreted self-test results with a subset of participants who symptom onset ≤3 days.
Λ_b \to Λ_c P(V) Nonleptonic Weak Decays
Creators: name: Guo, X. -H.
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The two-body nonleptonic weak decays of Λ_b \to Λ_c P(V) (P and V represent pseudoscalar and vector mesons respectively) are analyzed in two models, one is the Bethe-Salpeter (B-S) model and the other is the hadronic wave function model. The calculations are carried out in the factorization approach. The obtained results are compared with other model calculations.
description: 18 pages, Latex
Subhalo destruction in the Apostle and Auriga simulations
Creators: name: Richings, Jack
name: Frenk, Carlos
name: Jenkins, Adrian
name: Robertson, Andrew
name: Fattahi, Azadeh
name: Grand, Robert J. J.
name: Navarro, Julio
name: Pakmor, Rudiger
name: Gomez, Facundo A.
name: Marinacci, Federico
Publisher: name: arXiv
Year: 2018
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: N-body simulations make unambiguous predictions for the abundance of substructures within dark matter halos. However, the inclusion of baryons in the simulations changes the picture because processes associated with the presence of a large galaxy in the halo can destroy subhalos and substantially alter the mass function and velocity distribution of subhalos. We compare the effect of galaxy formation on subhalo populations in two state-of-the-art sets of hydrodynamical CDM simulations of Milky Way mass halos, APOSTLE and AURIGA. We introduce a new method for tracking the orbits of subhalos between simulation snapshots that gives accurate results down to a few kiloparsecs from the centre of the halo. Relative to a dark matter-only simulation, the abundance of subhalos in APOSTLE is reduced by 50% near the centre and by 10% within r200. In AURIGA the corresponding numbers are 80% and 40%. The velocity distributions of subhalos are also affected by the presence of the galaxy, much more so in AURIGA than in APOSTLE . The differences on subhalo properties in the two simulations can be traced back to the mass of the central galaxies, which in AURIGA are typically twice as massive as those in APOSTLE . We show that some of the results from previous studies are inaccurate due to systematic errors in the modelling of subhalo orbits near the centre of halos.
description: Submitted to MNRAS
Glyphodesmis rhombica Simonsen 1975
Creators: name: Joh, Gyeongje
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Chromista
Ochrophyta
Bacillariophyceae
Triceratiales
Plagiogrammaceae
Glyphodesmis
Glyphodesmis rhombica

description: 21. Glyphodesmis rhombica (Cleve) Simonsen (Figs 35–37)
 Basionym: Fragilaria rhombica Cleve.
 Synonym: Glyphodesmis acus A. Mann; Fragilaria inflata var. rhombica Meister.
 Type locality: Bali Sound, Indonesia
 Reference: Simonsen 1974, p. 35, pl. 23, fig. 1; Fryxell & Miller 1978, p. 120, figs 11–19.
 Morphometrics: Valves 35–43 (42–68) μm long, 8.5–10 (10–12) μm wide, transapical striae 15–16 (16–17) in 10 μm, and puncta on a stria 18 in 10 μm.
 Remarks: This taxon is characterized by having a nodule in the central area. Fryxell & Miller (1978) questioned that Simonsen (1974) considered Glyphodesmis rhombica and G. acus to be the same species, but here, in the Simonsen’s view, they are regarded as the same species. This species was reported in only a few cases, Jolo of the southwestern Philippines (Mann 1925) and Sabang of northern Sumatra (Meister 1932) as type localities of the synonyms, in the coast of Somalia (Simonsen 1974) and the eastern Australia (Foged 1978). It has been only observed a few times in Seogwipo coast, and this is a new report to South Korea.
description: Published as part of Joh, Gyeongje, 2021, Distribution and frequent occurrence of diatom taxa (Bacillariophyta) inhabiting warmer oceans in Seogwipo coast of Jeju Island, southernmost Korea, pp. 1-67 in Phytotaxa 517 (1) on page 18, DOI: 10.11646/phytotaxa.517.1.1, http://zenodo.org/record/8061058
Additional file 3: of Nature of selection varies on different domains of IFI16-like PYHIN genes in ruminants
Creators: name: Kumar, Sushil
name: Chera, Jatinder
name: Vats, Ashutosh
name: Sachinandan De
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: PYHIN sequences used for phylogenetic analysis. (DOCX 13 kb)
Additional file 2 of Which triggers could support timely identification of primary antibody deficiency? A qualitative study using the patient perspective
Creators: name: Janssen, Lisanne M. A.
name: van den Akker, Kim
name: Boussihmad, Mohamed A.
name: de Vries, Esther
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 2. Codes, categories, and themes used in the qualitative analysis.
Avoiding Ergodicity Problems in Lattice Discretizations of the Hubbard Model
Creators: name: Wynen, Jan-Lukas
name: Berkowitz, Evan
name: Körber, Christopher
name: Lähde, Timo A.
name: Luu, Thomas
Publisher: name: arXiv
Year: 2018
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: The Hubbard model arises naturally when electron-electron interactions are added to the tight-binding descriptions of many condensed matter systems. For instance, the two-dimensional Hubbard model on the honeycomb lattice is central to the ab initio description of the electronic structure of carbon nanomaterials, such as graphene. Such low-dimensional Hubbard models are advantageously studied with Markov chain Monte Carlo methods, such as Hybrid Monte Carlo (HMC). HMC is the standard algorithm of the lattice gauge theory community, as it is well suited to theories of dynamical fermions. As HMC performs continuous, global updates of the lattice degrees of freedom, it provides superior scaling with system size relative to local updating methods. A potential drawback of HMC is its susceptibility to ergodicity problems due to so-called exceptional configurations, for which the fermion operator cannot be inverted. Recently, ergodicity problems were found in some formulations of HMC simulations of the Hubbard model. Here, we address this issue directly and clarify under what conditions ergodicity is maintained or violated in HMC simulations of the Hubbard model. We study different lattice formulations of the fermion operator and provide explicit, representative calculations for small systems, often comparing to exact results. We show that a fermion operator can be found which is both computationally convenient and free of ergodicity problems.
description: 40 pages, 16 figures