cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1 of Artificial intelligence-based refractive error prediction and EVO-implantable collamer lens power calculation for myopia correction
Creators: name: Jiang, Yinjie
name: Shen, Yang
name: Chen, Xun
name: Niu, Lingling
name: Li, Boliang
name: Cheng, Mingrui
name: Lei, Yadi
name: Xu, Yilin
name: Wang, Chongyang
name: Zhou, Xingtao
name: Wang, Xiaoying
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 1: Friedman test results of the distribution of prediction error and absolute error.
Western Hemispheric Agricultural Trade: Initiatives and Agreements
Creators: name: Andrew, Chris O.
name: Messina, William A.
name: Gottret, Veronica
name: Andrew, Chris O.
name: Messina, William A.
name: Gottret, Veronica
Publisher: name: Unknown
Year: 1990
Subjects: subject: International Relations/Trade
subject: trade
subject: trade policy
subject: Western Hemisphere
subject: Caribbean
subject: Mexico
subject: agriculture

description: World agricultural trade has become incre3singly important issue as evidenced by its inclusion in the ongoing Uruguay Round of the General Agreement on Tariffs and Trade (GA TT). Special regional trade agreements either in place or under discussion (i.e. the U.S. Caribbean Basin Initiative, U.S./Canada Free Trade Agreement, EC-1992 and the U.S./Mexican Free Trade Agreement) make the process of agricultural trade negotiation even more complex. This paper reviews a broad range of world and agricultural trade statistics in an effort to place Western Hemisphere agricultural trade into perspective. It then goes on to summarize some of the research conducted by the University of Florida, Department of Food and Resource Economics designed to help identify the impact of trade programs and agricultural policies in the Western Hemisphere. Finally, the paper discusses some of the issues and concerns that need to be addressed in the context of trade agreements currently under consideration in the Western Hemisphere.
Additional file 2 of Artificial intelligence-based refractive error prediction and EVO-implantable collamer lens power calculation for myopia correction
Creators: name: Jiang, Yinjie
name: Shen, Yang
name: Chen, Xun
name: Niu, Lingling
name: Li, Boliang
name: Cheng, Mingrui
name: Lei, Yadi
name: Xu, Yilin
name: Wang, Chongyang
name: Zhou, Xingtao
name: Wang, Xiaoying
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 2. Cochran Q test results of the percentage of prediction errors within ranges.
Planning Problems in a Vertically Coordinated Hog-Pork Industry
Creators: name: Honegger, Gordon D.
name: Candler, Wilfred V.
name: Honegger, Gordon D.
name: Candler, Wilfred V.
Publisher: name: Unknown
Year: 1973
Subjects: Livestock Production/Industries

description: This paper discusses planning of production and marketing in the ho~pork industry. Long, intermediate and short term planning problems are delineated. A linear programming model is presented which focuses on the intermediate term planning problem. It is suggested that such models are themselves part of the technology which will mov€ the hog-pork industry away fro~ price-coordination towards policy-coordination.
Accelerated knee osteoarthritis is associated with pre-radiographic degeneration of the extensor mechanism and cruciate ligaments: data from the Osteoarthritis Initiative
Creators: name: Davis, Julie E.
name: Harkey, Matthew S.
name: Ward, Robert J.
name: MacKay, James W.
name: Lu, Bing
name: Price, Lori Lyn
name: Eaton, Charles B.
name: Lo, Grace H.
name: Barbe, Mary F.
name: McAlindon, Timothy E.
name: Driban, Jeffrey B.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2019
Subjects: Research Article
Epidemiology
Knee
Osteoarthritis
Ligaments
Tendons

description: Abstract: Background: To determine if adults with incident accelerated knee osteoarthritis (KOA) are more likely to have degenerative knee ligaments or tendons compared to individuals with typical or no KOA. Methods: We identified 3 sex-matched groups among Osteoarthritis Initiative participants who had a knee without radiographic KOA at baseline (Kellgren-Lawrence [KL] < 2): 1) accelerated KOA: at least 1 knee had KL grade ≥ 3 in ≤48 months, 2) typical KOA: at least 1 knee increased in radiographic scoring within 48 months, 3) no KOA: both knees had the same KL grade at baseline and 48 months. We evaluated knee magnetic resonance images up to 2 years before and after a visit when the accelerated or typical KOA criteria were met (index visit). Radiologists reported degenerative signal changes for cruciate and collateral ligaments, and extensor mechanism and proximal gastrocnemius tendons. We used generalized linear mixed models with 2 independent variables: group and time. Results: Starting at least 2 years before onset, adults with accelerated KOA were twice as likely to have degenerative cruciate ligaments than no KOA (odds ratio = 2.10, 95% CI = 1.18, 3.74). A weaker association (not statistically significant) was detected for adults with accelerated versus typical KOA (OR = 1.72, 95%CI = 0.99, 3.02). Regardless of time, adults with accelerated (odds ratio = 2.13) or typical KOA (odds ratio = 2.16) were twice as likely to have a degenerative extensor mechanism than no KOA. No other structural features were statistically significant. Conclusions: Degenerative cruciate ligaments or extensor mechanism antedate radiographic onset of accelerated KOA. Hence, knee instability may precede accelerated KOA, which might help identify patients at high-risk for accelerated KOA and novel prevention strategies.
Additional file 1 of Analysis of genomic and non-genomic signaling of estrogen receptor in PDX models of breast cancer treated with a combination of the PI3K inhibitor alpelisib (BYL719) and fulvestrant
Creators: name: Jacquemetton, Julien
name: Loay Kassem
name: Poulard, Coralie
name: Dahmani, Ahmed
name: De Plater, Ludmilla
name: Montaudon, Elodie
name: Sourd, Laura
name: Morisset, Ludivine
name: Botty, Rania El
name: Chateau-Joubert, Sophie
name: Vacher, Sophie
name: Bièche, Ivan
name: Treilleux, Isabelle
name: Trédan, Olivier
name: Marangoni, Elisabetta
name: Romancer, Muriel Le
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Plant Biology

description: Additional file 1: Supplementary methods.
Global mental health: an improved measure of well-being in multiple languages
Creators: name: Graeff-Buhl-Nielsen, Sophia
name: Garcia-Garzon, Eduardo
name: Benzerga, Amel
name: Folke, Tomas
name: Ruggeri, Kai
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Research
Well-being
Policy
Measurement
Population
Cross-cultural

description: Abstract: Background: An increasing number of international organisations and national governments have committed to well-being promotion. Unfortunately, important questions regarding how to assess well-being are still unresolved, making policy implementation and evaluation difficult. Methods: This research expanded on Huppert and So’s (Soc Indic Res. 110, 837–861 2013) multidimensional subjective well-being framework by investigating the replicability of the model in two non-European regions (South America, represented by Brazil and Colombia, and Eastern Africa, represented by Uganda), and the United Kingdom. Additionally, previous limitations of the framework were also addressed. ESS Round Six items were crucially improved in terms of temporal and response scale consistency. Bayesian approximate measurement invariance was applied on a sample of 381 young adult participants to test for consistency across countries. Results: The Huppert & So (Soc Indic Res. 110, 837–861 2013) model was found to fairly replicate across non-European regions, where meaningful differences in well-being patterns across regions were observed. Additionally, estimated well-being was related with other well-being measures (Five Ways): Learn and Connect were the strongest predictors of general well-being, with Take Notice and Give being associated with specific aspects of it. Conclusions: Based on this narrow sample of young adults, it appears the ten-item measure proposed by Huppert & So (Soc Indic Res. 110, 837–861 2013) is useful for assessing population mental health outside of Europe. This is only an initial attempt to assess qualities, so further testing should be done before applying at scale for identifying policy opportunities to address well-being of populations.
Influence of interface and microstructure on magnetization of epitaxial Fe4N thin film
Creators: name: Pandey, Nidhi
name: Putter, S.
name: Amir, S. M.
name: Reddy, V. R.
name: Phase, D. M.
name: Stahn, J.
name: Gupta, Ajay
name: Gupta, Mukul
Publisher: name: arXiv
Year: 2019
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Epitaxial Fe4N thin films grown on lattice-matched LaAlO3 (LAO) substrate using sputtering and molecular beam epitaxy techniques have been studied in this work. Within the sputtering process, films were grown with conventional direct current magnetron sputtering (dcMS) and for the first time, using a high power impulse magnetron sputtering (HiPIMS) process. Surface morphology and depth profile reveal that HiPIMS deposited film has the lowest roughness, the highest packing density and the sharpest interface. La from the LAO substrate and Fe from the film interdiffuse and forms an undesired interface spreading to an extent of about 10-20 nm. In the HiPIMS process, layer by layer type growth leads to a globular microstructure which restricts the extent of the interdiffused interface. Such substrate-film interactions and microstructure play a vital role in affecting the electronic hybridization and magnetic properties of Fe4N films. The magnetic moment (Ms) was compared using bulk, element-specific and magnetic depth profiling techniques. We found that Ms was the highest when the thickness of the interdiffused layer was lowest and only be achieved in the HiPIMS grown samples. Presence of small moment at the N site was also evidenced by element-specific x-ray circular dichroism measurement in HiPIMS grown sample. A large variation in the Ms values of Fe4N found in the experimental works carried out so far could be due to such interdiffused layer which is generally not expected to form in otherwise stable oxide substrate. In addition, a consequence of substrate-film interdiffusion and microstructure results in different kinds of different kind of magnetic anisotropies in films grown using different techniques.
description: 8 pages, 8 figures, Supplementary Material
Anamixis moana Thomas 1997
Creators: name: White, Kristine N.
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Amphipoda
Leucothoidae
Anamixis
Anamixis moana

description: Anamixis moana Thomas, 1997
 Anamixis stebbingi J.L. Barnard, 1970: 64, fig. 27.
 Anamixis moana Thomas, 1997: 61, fig. 12.
 Type locality and specimens. Sampan Pass, Kaneohe Bay, Oahu. Holotype, anamorph male, 2.40 mm, BPBM 58650.
 Material examined. No material available for examination. Diagnosis based on description by Thomas (1997).
 Diagnosis. Large ventral keel tapering into a triangular process beneath the eye. Eye ocelli scattered. Coxa 2– 4 subequal in size; coxa 2 with distal margin slightly produced.
 Note. Anamixis stebbingi J.L. Barnard, 1970 is considered a junior synonym of Anamixis moana Thomas, 1997 because it was misidentified as Anamixis stebbingi Walker, 1904, which is a valid species.
 Leucomorph (juvenile/sexually dimorphic characters). Unknown.
 Habitat. Among coral rubble; 2 m.
 Host. Unknown.
 Distribution. Pacific Ocean: Hawaiian Islands (J.L. Barnard 1970; Thomas 1997).
description: Published as part of White, Kristine N., 2011, A taxonomic review of the Leucothoidae (Crustacea: Amphipoda) 3078, pp. 1-113 in Zootaxa 3078 (1) on page 19, DOI: 10.11646/zootaxa.3078.1.1, http://zenodo.org/record/5243821
Additional file 3 of Enhancer RNA commits osteogenesis via microRNA-3129 expression in human bone marrow-derived mesenchymal stem cells
Creators: name: Nguyen, Anh Phuong
name: Yamagata, Kaoru
name: Iwata, Shigeru
name: Trimova, Gulzhan
name: Zhang, Tong
name: Shan, Yu
name: Nguyen, Mai-Phuong
name: Sonomoto, Koshiro
name: Nakayamada, Shingo
name: Kato, Shigeaki
name: Tanaka, Yoshiya
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3: Supplementary Table S3. List of 45 genes predicted to be regulated by osteoblast-specific SEs based on the dbSUPER database.
Perceptual Image Anomaly Detection
Creators: name: Tuluptceva, Nina
name: Bakker, Bart
name: Fedulova, Irina
name: Konushin, Anton
Publisher: name: arXiv
Year: 2019
Subjects: subject: Image and Video Processing (eess.IV)
subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Computer and information sciences

description: We present a novel method for image anomaly detection, where algorithms that use samples drawn from some distribution of "normal" data, aim to detect out-of-distribution (abnormal) samples. Our approach includes a combination of encoder and generator for mapping an image distribution to a predefined latent distribution and vice versa. It leverages Generative Adversarial Networks to learn these data distributions and uses perceptual loss for the detection of image abnormality. To accomplish this goal, we introduce a new similarity metric, which expresses the perceived similarity between images and is robust to changes in image contrast. Secondly, we introduce a novel approach for the selection of weights of a multi-objective loss function (image reconstruction and distribution mapping) in the absence of a validation dataset for hyperparameter tuning. After training, our model measures the abnormality of the input image as the perceptual dissimilarity between it and the closest generated image of the modeled data distribution. The proposed approach is extensively evaluated on several publicly available image benchmarks and achieves state-of-the-art performance.
description: The final authenticated publication is available online at https://doi.org/10.1007/978-3-030-41404-7_12
Equilibrium Statistical Mechanics of Fermion Lattice Systems
Creators: name: Araki, Huzihiro
name: Moriya, Hajime
Publisher: name: arXiv
Year: 2002
Subjects: subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences
subject: 82B10; 81R15

description: We study equilibrium statistical mechanics of Fermion lattice systems which require a different treatment compared with spin lattice systems due to the non-commutativity of local algebras for disjoint regions. Our major result is the equivalence of the KMS condition and the variational principle with a minimal assumption for the dynamics and without any explicit assumption on the potential. It holds also for spin lattice systems as well, yielding a vast improvement over known results. All formulations are in terms of a C*-dynamical systems for the Fermion (CAR) algebra with all or a part of the following assumptions: (I) The interaction is even with respect to the Fermion number. (Automatically satisfied when (IV) below is assumed.) (II) All strictly local elements of the algebra have the first time derivative. (III) The time derivatives in (II) determine the dynamics. (IV) The interaction is lattice translation invariant. A major technical tool is the conditional expectation from the total algebra onto the local subalgebra for any finite subset of the lattice, which induces a system of commuting squares. This technique overcomes the lack of tensor product structures for Fermion systems and even simplifies many known arguments for spin lattice systems.
description: 103 pages, no figure. The Section 13 has become simpler and a problem in 14.1 is settled thanks to a referee. The format has been revised according to the suggestion of this and the other referees
Test Your Memory (TYM test): diagnostic evaluation of patients with non-Alzheimer dementias
Creators: name: Brown, Jeremy
name: Wiggins, Julie
name: Lansdall, Claire J.
name: Dawson, Kate
name: Rittman, Timothy
name: Rowe, James B.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2019
Subjects: Original Communication
Dementia
Alzheimer’s
Cognitive
TYM
Non-Alzheimer dementia
Sensitivity and specificity

description: Abstract: Background/aims: To validate the use of the Test Your Memory (TYM) test in dementias other than Alzheimer’s disease, and to compare the TYM test to two other short cognitive tests. Methods: One hundred and fifty-seven patients with dementia other than typical Alzheimer’s disease were recruited from a specialist memory clinic. Patients completed the TYM test, the revised Addenbrooke’s Cognitive Examination (ACE-R) and Mini-Mental State Examination (MMSE), plus neurological examination, clinical diagnostics and multi-disciplinary team review. Their TYM scores were compared to age-matched controls and an Alzheimer’s disease cohort. Results: Patients scored an average of 34.4/50 on the TYM test compared to 46.0/50 in age-matched controls. Using the threshold of 42/50, the TYM test detected 80% of non-Alzheimer dementias. The area under the ROC curve was 0.89 with a PPV of 0.80 and a NPV of 0.84. The TYM test performed better than the ACE-R (using the threshold of 83) which detected 69% of cases and the MMSE (using a threshold of 24) which detected only 27%. Conclusions: The TYM test is a useful test in the detection of non-Alzheimer dementia. The TYM test performs much better than the MMSE at detecting non-Alzheimer dementias.
Entanglement Classifier in Chemical Reactions
Creators: name: Li, Junxu
name: Kais, Sabre
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Ever since the appearance of the seminal work of Einstein, Podolsky and Rosen (The EPR-paradox), the phenomenon of entanglement, which features the essential difference between classical and quantum physics, has received wide theoretical and experimental attentions. Recently the desire to understand and create quantum entanglement between particles such as spins, photons, atoms and molecules is fueled by the development of quantum teleportation, quantum communication, quantum cryptography and quantum computation. Although most of the work has focused on showing that entanglement violates the famous Bell's inequality and its generalization for discrete measurements, few recent attempts focus on continuous measurement results. Here, we have developed a general practical inequality to test entanglement for continuous measurement results, particularly scattering of chemical reactions. After we explain how to implement this new inequality to classify entanglement in scattering experiments, we propose a specific chemical reaction to test the violation of this inequality. The method is general and could be used to classify entanglement for continuous measurement results.
Anamixis nedcampensis Thomas 1997
Creators: name: White, Kristine N.
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Amphipoda
Leucothoidae
Anamixis
Anamixis nedcampensis

description: Anamixis nedcampensis Thomas, 1997
 Anamixis nedcampensis Thomas, 1997: 61–64, fig. 13. — Lowry & Stoddart, 2003: 154.
 Type locality and specimens. Ningaloo Reef, Cape Range National Park, Western Australia. Holotype, anamorph male, 3.02 mm, AM P41033; paratypes, anamorph males, 2.95 and 2.87 mm.
 Material examined. No material available for examination. Diagnosis based on description by Thomas (1997).
 Diagnosis. Gnathopod 1 carpus distally inflated. Gnathopod 2 carpus with small subdistal tooth; propodus narrow.
 Leucomorph (juvenile/sexually dimorphic characters). Unknown.
 Habitat. Among algae on limestone reefs; 1 meter.
 Host. Unknown.
 Distribution. Eastern Indian Ocean: Western Australia (Thomas 1997; Lowry & Stoddart 2003).
description: Published as part of White, Kristine N., 2011, A taxonomic review of the Leucothoidae (Crustacea: Amphipoda) 3078, pp. 1-113 in Zootaxa 3078 (1) on page 20, DOI: 10.11646/zootaxa.3078.1.1, http://zenodo.org/record/5243821
Additional file 1: of Frequency of Screening and SBT Technique Trial - North American Weaning Collaboration (FAST-NAWC): a protocol for a multicenter, factorial randomized trial
Creators: name: K. Burns
name: Rizvi, Leena
name: Cook, Deborah
name: Seely, Andrew
name: Rochwerg, Bram
name: Francois Lamontagne
name: Devlin, John
name: Dodek, Peter
name: Mayette, Michael
name: Tanios, Maged
name: Gouskos, Audrey
name: Kay, Phyllis
name: Mitchell, Susan
name: Kiedrowski, Kenneth
name: Hill, Nicholas
Publisher: name: figshare
Year: 2019
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional Protocol Information. (DOCX 25 kb)
Neutral-current neutrino reactions in the supernova environment
Creators: name: Sampaio, J. M.
name: Langanke, K.
name: Martinez-Pinedo, G.
name: Dean, D. J.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We study the neutral-current neutrino scattering for four nuclei in the iron region. We evaluate the cross sections for the relevant temperatures during the supernova core collapse and derive Gamow-Teller distributions from large-scale shell-model calculations. We show that the thermal population of the excited states significantly enhances the cross sections at low neutrino energies. Calculations of the outgoing neutrino spectra indicate the prospect of neutrino upscattering at finite temperatures. Both results are particularly notable in even-even nuclei.
description: 14 pages, 4 figures, accepted in Phys. Lett. B)
Additional file 2 of Analysis of genomic and non-genomic signaling of estrogen receptor in PDX models of breast cancer treated with a combination of the PI3K inhibitor alpelisib (BYL719) and fulvestrant
Creators: name: Jacquemetton, Julien
name: Loay Kassem
name: Poulard, Coralie
name: Dahmani, Ahmed
name: De Plater, Ludmilla
name: Montaudon, Elodie
name: Sourd, Laura
name: Morisset, Ludivine
name: Botty, Rania El
name: Chateau-Joubert, Sophie
name: Vacher, Sophie
name: Bièche, Ivan
name: Treilleux, Isabelle
name: Trédan, Olivier
name: Marangoni, Elisabetta
name: Romancer, Muriel Le
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Plant Biology

description: Additional file 2: Table S1. Baseline characteristics for the patients included in the TMA study.
Additional file 6 of De novo assembly provides new insights into the evolution of Elaeagnus angustifolia L.
Creators: name: Mao, Yunfei
name: Cui, Xueli
name: Wang, Haiyan
name: Qin, Xin
name: Liu, Yangbo
name: Yin, Yijun
name: Su, Xiafei
name: Tang, Juan
name: Wang, Fengling
name: Ma, Fengwang
name: Duan, Naibin
name: Zhang, Donglin
name: Hu, Yanli
name: Wang, Wenli
name: Wei, Shaochong
name: Chen, Xiaoliu
name: Mao, Zhiquan
name: Chen, Xuesen
name: Shen, Xiang
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 6: Figure S1. 12 wild E. angustifolia samples.
MOESM2 of Assessment of needle stick and sharp injuries among health care workers in central zone ofÂ Tigray, northern Ethiopia
Creators: name: Weldesamuel, Elias
name: Hailay Gebreyesus
name: Berhe Beyene
name: Mebrahtu Teweldemedhin
name: Zemichael Welegebriel
name: Desalegn Tetemke
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer

description: Additional file 2: Figure S1. A bar graph which shows job category of health care and auxiliary workers in central Zone Tigray, northern Ethiopia, 2017.
Adiabatic and isocurvature fluctuations of Affleck-Dine field in D-term inflation model
Creators: name: Kawasaki, Masahiro
name: Takahashi, Fuminobu
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We reconsider fluctuations of Affleck-Dine (AD) field in a D-term inflation model. Contrary to the previous analysis, we find that the spectrum of the adiabatic fluctuations is almost scale invariant even if the AD field has a large initial value. Furthermore, we study the isocurvature fluctuations of the AD field and estimate the ratio of the isocurvature to adiabatic power spectrum. The dynamics of the inflaton and AD fields sets the upper bound for the value of the AD field, leading to a lower limit for isocurvature perturbation. It is shown that the recent Cosmic Microwave Background data give a constraint on the D-term inflation and the AD field.
description: 11pages,2figures;to appear in Phys. Lett. B
MOESM3 of Assessment of needle stick and sharp injuries among health care workers in central zone ofÂ Tigray, northern Ethiopia
Creators: name: Weldesamuel, Elias
name: Hailay Gebreyesus
name: Berhe Beyene
name: Mebrahtu Teweldemedhin
name: Zemichael Welegebriel
name: Desalegn Tetemke
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Additional file 3: Figure S2. A bar graph which shows Current working department of health care and auxiliary workers in central Zone Tigray, northern Ethiopia, 2017.
Analysis of endothelial-to-haematopoietic transition at the single cell level identifies cell cycle regulation as a driver of differentiation
Creators: name: Canu, Giovanni
name: Athanasiadis, Emmanouil
name: Grandy, Rodrigo A.
name: Garcia-Bernardo, Jose
name: Strzelecka, Paulina M.
name: Vallier, Ludovic
name: Ortmann, Daniel
name: Cvejic, Ana
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Research

description: Funder: INTENS EU fp8 consortium
description: Funder: ERC advanced grant New-Chol
description: Abstract: Background: Haematopoietic stem cells (HSCs) first arise during development in the aorta-gonad-mesonephros (AGM) region of the embryo from a population of haemogenic endothelial cells which undergo endothelial-to-haematopoietic transition (EHT). Despite the progress achieved in recent years, the molecular mechanisms driving EHT are still poorly understood, especially in human where the AGM region is not easily accessible. Results: In this study, we take advantage of a human pluripotent stem cell (hPSC) differentiation system and single-cell transcriptomics to recapitulate EHT in vitro and uncover mechanisms by which the haemogenic endothelium generates early haematopoietic cells. We show that most of the endothelial cells reside in a quiescent state and progress to the haematopoietic fate within a defined time window, within which they need to re-enter into the cell cycle. If cell cycle is blocked, haemogenic endothelial cells lose their EHT potential and adopt a non-haemogenic identity. Furthermore, we demonstrate that CDK4/6 and CDK1 play a key role not only in the transition but also in allowing haematopoietic progenitors to establish their full differentiation potential. Conclusion: We propose a direct link between the molecular machineries that control cell cycle progression and EHT.
MOESM1 of Long-term efficacy of interventions for actinic keratosis: protocol for a systematic review and network meta-analysis
Creators: name: Steeb, Theresa
name: Heppt, Markus
name: Becker, Lars
name: Kohl, Christoph
name: French, Lars
name: Berking, Carola
Publisher: name: figshare
Year: 2019
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 1. PRISMA-P 2015 checklist.
An Analysis of Current Energy Consumption in China's Agricultural Production
Creators: name: ZHANG, Xia
name: CAI, Zongshou
name: CHEN, Lihong
name: ZHANG, Dezheng
name: ZHANG, Zhe
name: ZHANG, Xia
name: CAI, Zongshou
name: CHEN, Lihong
name: ZHANG, Dezheng
name: ZHANG, Zhe
Publisher: name: Unknown
Year: 2015
Subjects: subject: Agribusiness
subject: Agricultural production
subject: Energy consumption
subject: Current situation
subject: Analysis

description: Energy consumption is one of the important symbols of modern agriculture, and it is also an important input in modern agricultural production. The study on the agricultural energy consumption not only has a positive significance to agricultural energy saving, emission reduction and ecological environment protection, but also can greatly reduce the cost of agricultural production and improve the economic benefit of farmers. Through the analysis of the national statistical data about energy consumption for agriculture production from 2005 to 2012 year, the results show that the amount of energy consumption for agricultural production in China has increased year by year since 2005. Because of the continued growth of the total energy consumption in China, the proportion of energy consumption for agricultural production to the total energy consumption of China has declined slightly since 2005. At present, the energy consumption structure for agricultural production in China is diesel fuel, coal, electric power, gasoline, and indirect energy consumption. With the rapid development of the agricultural technology in recent years, the total agricultural output value in China has increased greatly, the direct and indirect agricultural energy consumption per unit of agricultural output value in China has decreased year by year, and the efficiency of energy consumption for agricultural production has increased consequently.
Parallel time-stepping for fluid-structure interactions
Creators: name: Margenberg, Nils
name: Richter, Thomas
Publisher: name: arXiv
Year: 2019
Subjects: subject: Numerical Analysis (math.NA)
subject: FOS: Mathematics

description: We present a parallel time-stepping method for fluid-structure interactions. The interaction between the incompressible Navier-Stokes equations and a hyperelastic solid is formulated in a fully monolithic framework. Discretization in space is based on equal order finite element for all variables and a variant of the Crank-Nicolson scheme is used as second order time integrator. To accelerate the solution of the systems, we analyze a parallel-in time method. For different numerical test cases in 2d and in 3d we present the efficiency of the resulting solution approach. We also discuss some special challenges and limitations that are connected to the special structure of fluid-structure interaction problem.
On two-temperature problem for harmonic crystals
Creators: name: Dudnikova, T. V.
name: Komech, A. I.
name: Mauser, N. J.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Mathematical Physics (math-ph)
subject: Probability (math.PR)
subject: FOS: Physical sciences
subject: FOS: Mathematics
subject: 82D25, 82C05, 82B05

description: We consider the dynamics of a harmonic crystal in $d$ dimensions with $n$ components,$d,n \ge 1$. The initial date is a random function with finite mean density of the energy which also satisfies a Rosenblatt- or Ibragimov-Linnik-type mixing condition. The random function converges to different space-homogeneous processes as $x_d\to\pm\infty$, with the distributions $μ_\pm$. We study the distribution $μ_t$ of the solution at time $t\in\R$. The main result is the convergence of $μ_t$ to a Gaussian translation-invariant measure as $t\to\infty$. The proof is based on the long time asymptotics of the Green function and on Bernstein's `room-corridor' argument. The application to the case of the Gibbs measures $μ_\pm=g_\pm$ with two different temperatures $T_{\pm}$ is given. Limiting mean energy current density is $- (0,...,0,C(T_+ - T_-))$ with some positive constant $C>0$ what corresponds to Second Law.
A dynamic model for current-based nozzle condition monitoring in fused deposition modelling
Creators: name: Tlegenov, Yedige
name: Lu, Wen Feng
name: Hong, Geok Soon
Publisher: name: Apollo - University of Cambridge Repository
Year: 2019
Subjects: Full Research Article
3D printing
Fused deposition modelling
Fused filament fabrication
Condition monitoring
Nozzle clogging

description: Abstract: 3D printing and particularly fused deposition modelling (FDM) is widely used for prototyping and fabricating low-cost customised parts. However, present fused deposition modelling 3D printers have limited nozzle condition monitoring techniques to minimize nozzle clogging errors. Nozzle clogging is one of the significant process errors in fused deposition modelling 3D printers, and it affects the quality of prototyped parts in terms of mechanical properties and geometrical accuracy. This paper proposes a dynamic model for current-based nozzle condition monitoring in fused deposition modelling, which is briefly described as follows. First, all the process forces in filament extrusion of the fused deposition modelling were identified and derived theoretically, and theoretical equations of the feed rolling forces and flow-through-nozzle forces were derived. In addition, the effect of the nozzle clogging on the current of extruding motor were identified. Second, based on the proposed dynamic model, current-based nozzle condition monitoring method was proposed. Next, sets of experiments on FDM machine using polylactic acid (PLA) material were carried out to verify the proposed theoretical model, and the results were analysed and evaluated. Findings of the present study indicate that nozzle clogging in FDM 3D printing can be monitored by sensing the current of the filament extruding motor. The proposed model can be used efficiently for monitoring nozzle clogging conditions in fused deposition modelling 3D printers as it is based on the fundamental process modelling.
Fragment Distribution in Coexistence Phase of Supernova Matter
Creators: name: Ishizuka, Chikako
name: Ohnishi, Akira
name: Sumiyoshi, Kousuke
Publisher: name: arXiv
Year: 2002
Subjects: subject: Nuclear Theory (nucl-th)
subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We propose a new nucleosynthesis process in which various nuclei are formed through the liquid-gas phase transition of supernova matter as a preprocess of the standard r-process, and study its possibility of realization qualitatively. In the relativistic mean field and statistical model calculations, we find that this process may take place and help the later r-process to proceed.
description: 5 pages, 3 figures, proceedings of Yukawa International Seminar 2001 (YKIS01), Physics of Unstable Nuclei, November 5-10, 2001, Kyoto, Japan. (v2: minor package change to adapt ptptex style file.)
General Situations of Development of Photovoltaic Agriculture
Creators: name: ZHANG, Xiaohang
name: CUI, Shoufu
name: LIU, Fuping
name: ZHANG, Xiaohang
name: CUI, Shoufu
name: LIU, Fuping
Publisher: name: Unknown
Year: 2015
Subjects: subject: Agribusiness
subject: Photovoltaic agriculture
subject: Policy
subject: Significance
subject: Application
subject: Recommendations

description: This paper firstly introduced policy of photovoltaic agriculture in China. It discussed significance of developing photovoltaic agriculture. Then, it introduced progress in application of photovoltaic agriculture at both home and abroad. Finally, it pointed out existing problems in photovoltaic agriculture and came up with recommendations for development of photovoltaic agriculture in China.
Diffractive Dijet Production at sqrt(s)=630 and 1800 GeV at the Fermilab Tevatron
Creators: name: The CDF Collaboration
name: Affolder, T.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: We report a measurement of the diffractive structure function $F_{jj}^D$ of the antiproton obtained from a study of dijet events produced in association with a leading antiproton in $\bar pp$ collisions at $\sqrt s=630$ GeV at the Fermilab Tevatron. The ratio of $F_{jj}^D$ at $\sqrt s=630$ GeV to $F_{jj}^D$ obtained from a similar measurement at $\sqrt s=1800$ GeV is compared with expectations from QCD factorization and with theoretical predictions. We also report a measurement of the $ξ$ ($x$-Pomeron) and $β$ ($x$ of parton in Pomeron) dependence of $F_{jj}^D$ at $\sqrt s=1800$ GeV. In the region $0.035
description: LaTeX, 9 pages, Submitted to Phys. Rev. Letters
Genome-wide investigation of gene-cancer associations for the prediction of novel therapeutic targets in oncology
Creators: name: Bazaga, Adrián
name: Leggate, Dan
name: Weisser, Hendrik
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article
/631/67/68
/631/114/1305
/631/114/2401
article

description: Abstract: A major cause of failed drug discovery programs is suboptimal target selection, resulting in the development of drug candidates that are potent inhibitors, but ineffective at treating the disease. In the genomics era, the availability of large biomedical datasets with genome-wide readouts has the potential to transform target selection and validation. In this study we investigate how computational intelligence methods can be applied to predict novel therapeutic targets in oncology. We compared different machine learning classifiers applied to the task of drug target classification for nine different human cancer types. For each cancer type, a set of “known” target genes was obtained and equally-sized sets of “non-targets” were sampled multiple times from the human protein-coding genes. Models were trained on mutation, gene expression (TCGA), and gene essentiality (DepMap) data. In addition, we generated a numerical embedding of the interaction network of protein-coding genes using deep network representation learning and included the results in the modeling. We assessed feature importance using a random forests classifier and performed feature selection based on measuring permutation importance against a null distribution. Our best models achieved good generalization performance based on the AUROC metric. With the best model for each cancer type, we ran predictions on more than 15,000 protein-coding genes to identify potential novel targets. Our results indicate that this approach may be useful to inform early stages of the drug discovery pipeline.
Conjoined twinning & biological individuation
Creators: name: Boyle, Alexandria
Publisher: name: Apollo - University of Cambridge Repository
Year: 2019
Subjects: Article
Biological individuation
Conjoined twins
Animals
Organisms
Animalism
Personal identity

description: Abstract: In dicephalus conjoined twinning, it appears that two heads share a body; in cephalopagus, it appears that two bodies share a head. How many human animals are present in these cases? One answer is that there are two in both cases—conjoined twins are precisely that, conjoined twins. Another is that the number of humans corresponds to the number of bodies—so there is one in dicephalus and two in cephalopagus. I show that both of these answers are incorrect. Prominent accounts of biological individuation, which treat the organism as an integrated whole, reveal that in these and other cases of conjoined twinning the ‘twins’ share a single human animal. This has a number of consequences for the debate about what we are. First, if animalism is true, individuals of our kind can be—and are—profoundly psychologically divided. Second, cephalopagus twinning does not divide animalism from its rivals, as has been claimed. Finally, animalists can reply to a vicious species of the ‘too many thinkers’ problem to which they are allegedly uniquely vulnerable.
Coulomb Energy of Nuclei
Creators: name: Shaginyan, V. R.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: The density functional determining the Coulomb energy of nuclei is calculated to the first order in $e^2$. It is shown that the Coulomb energy includes three terms: the Hartree energy; the Fock energy; and the correlation Coulomb energy (CCE), which contributes considerably to the surface energy, the mass difference between mirror nuclei, and the single-particle spectrum. A CCE-based mechanism of a systematic shift of the single-particle spectrum is proposed. A dominant contribution to the CCE is shown to come from the surface region of nuclei. The CCE effect on the calculated proton drip line is examined, and the maximum charge $Z$ of nuclei near this line is found to decrease by 2 or 3 units. The effect of Coulomb interaction on the effective proton mass is analyzed.
description: 10 pages, Latex. Devoted to 90-th Anniversary of A.B. Migdal's Birthday
Additional file 3 of Analysis of genomic and non-genomic signaling of estrogen receptor in PDX models of breast cancer treated with a combination of the PI3K inhibitor alpelisib (BYL719) and fulvestrant
Creators: name: Jacquemetton, Julien
name: Loay Kassem
name: Poulard, Coralie
name: Dahmani, Ahmed
name: De Plater, Ludmilla
name: Montaudon, Elodie
name: Sourd, Laura
name: Morisset, Ludivine
name: Botty, Rania El
name: Chateau-Joubert, Sophie
name: Vacher, Sophie
name: Bièche, Ivan
name: Treilleux, Isabelle
name: Trédan, Olivier
name: Marangoni, Elisabetta
name: Romancer, Muriel Le
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Plant Biology

description: Additional file 3: Table S2. Characteristics of the PDX models.
Observation of the Decay $B \to K \ell^{+} \ell^{-}$
Creators: name: Abe, K.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: We report a search for the flavor-changing neutral current decay $B \to K^{(*)} \ell^{+} \ell^{-}$ using a 29.1 fb${}^{-1}$ data sample accumulated at the $Υ(4S)$ resonance with the Belle detector at the KEKB $e^{+}e^{-}$ storage ring. We observe the decay process $B\to K\ell^+\ell^- (\ell = e, μ)$, for the first time, with a branching fraction of ${\cal B}(B \to K \ell^{+} \ell^{-}) = (0.75^{+0.25}_{-0.21} \pm 0.09) \times 10^{-6}$.
description: submitted to Physical Review Letter
Intermediate mass black holes' effect on compact object binaries
Creators: name: Deme, Barnabás
name: Meiron, Yohai
name: Kocsis, Bence
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: Although their existence is not yet confirmed observationally, intermediate mass black holes (IMBHs) may play a key role in the dynamics of galactic nuclei. In this paper, we neglect the effect of the nuclear star cluster itself and investigate only how a small reservoir of IMBHs influences the secular dynamics of stellar-mass black hole binaries, using N-body simulations. We show that our simplifications are valid and that the IMBHs significantly enhance binary evaporation by pushing the binaries into the Hill-unstable region of parameter space, where they are separated by the SMBH's tidal field. For binaries in the S-cluster region of the Milky Way, IMBHs drive the binaries to merge in up to 1-6% of cases, assuming five IMBHs within 5 pc of mass 10,000 solar masses each. Observations of binaries in the Galactic center may strongly constrain the population of IMBHs therein.
description: Accepted for publication in ApJ. 14 pages, 11 figures
Nonanomalous R-symmetry in supersymmetric unified theories of quarks and leptons
Creators: name: Kurosawa, Kiichi
name: Maru, Nobuhito
name: Yanagida, T.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: A discrete R-symmetry often appears as an exact gauge symmetry in the low energy effective theory of superstring theories. We search for such discrete R-symmetries from a phenomenological point of view and find that Z_{9R} and Z_{18R} are candidates of the nonanomalous R-symmetry in the case of the minimal supersymmetric standard model. We also find Z_{4R} and Z_{20R} in the case that quarks and leptons are embedded in the SU(5) GUT multiplets. Interesting is that in the latter case all the solutions predict some extra matter multiplets and we find that the simplest choice is to take a pair of {\bf 5} and {\bf 5}^* of SU(5)_{GUT} whose mass is of order the SUSY breaking scale \sim 1 TeV. We emphasize that the presence of such extra matters is testable in future collider experiments.
description: 15 pages, LaTeX, no figures
Ultrasensitive amplicon barcoding for next-generation sequencing facilitating sequence error and amplification-bias correction
Creators: name: Ahmed, Ibrahim
name: Tucci, Felicia A.
name: Aflalo, Aure
name: Smith, Kenneth G. C.
name: Bashford-Rogers, Rachael J. M.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article
/631/61
/631/250/2152/2497
/631/208/727
/631/208/737
/631/208/514
article

description: Abstract: The ability to accurately characterize DNA variant proportions using PCR amplification is key to many genetic studies, including studying tumor heterogeneity, 16S microbiome, viral and immune receptor sequencing. We develop a novel generalizable ultrasensitive amplicon barcoding approach that significantly reduces the inflation/deflation of DNA variant proportions due to PCR amplification biases and sequencing errors. This method was applied to immune receptor sequencing, where it significantly improves the quality and estimation of diversity of the resulting library.