cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Transitions of Orbifold Vacua
Creators: name: Choi, Kang-Sin
name: Kobayashi, Tatsuo
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We study the global structure of vacua of heterotic strings compactified on orbifolds $T^4/Z_N$ (N=2,3) in the presence of heterotic 5-branes. Gauge symmetry breaking associated with orbifold is described by instantons in the field theory. Phase transition between small instantons and heterotic 5-branes provides top-down, stringy account to the spectrum and modular invariance condition. Also it takes us from one vacuum to another by emitting and absorbing instantons. This means that many vacua with different gauge theory are in fact connected and are inherited from perturbative vacua. It follows that there are also transitions among twisted fields, heterotic 5-branes and instantons.
description: 34 pages
MOESM15 of Modular co-option of cardiopharyngeal genes during non-embryonic myogenesis
Creators: name: PrĂźnster, Maria
name: Ricci, Lorenzo
name: Brown, Federico
name: Tiozzo, Stefano
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 15. FigureÂ 13: ML tree of MRF.
Influence of chemical kinetics on spontaneous waves and detonation initiation in highly reactive and low reactive mixtures
Creators: name: Liberman, Mikhail
name: Wang, Cheng
name: Qian, Chengeng
name: Liu, JianNan
Publisher: name: arXiv
Year: 2018
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: Understanding the mechanisms of explosions is important for minimizing devastating hazards. Due to the complexity of real chemistry, a single-step reaction mechanism is usually used for theoretical and numerical studies. The purpose of this study is to look more deeply into the influence of chemistry on detonation initiated by a spontaneous wave. Results of high resolution simulations performed for one-step models are compared with simulations for detailed chemical models for highly reactive and low reactive mixtures. The calculated induction times for H2/air and for CH4/air are validated against experimental measurements for a wide range of temperatures and pressures. It is found that the requirements in terms of temperature and size of the hot spots, which produce a spontaneous wave capable to initiate detonation, are quantitatively and qualitatively different for one-step models compared to the detailed chemical models. The impact of detailed chemical model is particularly pronounced for the methane-air mixture. In this case, not only the hot spot size is much greater than that predicted by a one-step model, but even at elevated pressure the initiation of detonation by a temperature gradient is possible only if the temperature outside the gradient is so high, that can ignite thermal explosion. The obtained results suggest that the one-step models do not reproduce correctly the transient and ignition processes, so that interpretation of the simulations performed using a one-step model for understanding mechanisms of flame acceleration, DDT and the origin of explosions must be considered with great caution.
description: 45 pages, 43 figures
EmphasisChecker: A Tool for Guiding Chart and Caption Emphasis
Creators: name: Kim, Dae Hyun
name: Choi, Seulgi
name: Kim, Juho
name: Setlur, Vidya
name: Agrawala, Maneesh
Publisher: name: arXiv
Year: 2023
Subjects: subject: Human-Computer Interaction (cs.HC)
subject: FOS: Computer and information sciences

description: Recent work has shown that when both the chart and caption emphasize the same aspects of the data, readers tend to remember the doubly-emphasized features as takeaways; when there is a mismatch, readers rely on the chart to form takeaways and can miss information in the caption text. Through a survey of 280 chart-caption pairs in real-world sources (e.g., news media, poll reports, government reports, academic articles, and Tableau Public), we find that captions often do not emphasize the same information in practice, which could limit how effectively readers take away the authors' intended messages. Motivated by the survey findings, we present EmphasisChecker, an interactive tool that highlights visually prominent chart features as well as the features emphasized by the caption text along with any mismatches in the emphasis. The tool implements a time-series prominent feature detector based on the Ramer-Douglas-Peucker algorithm and a text reference extractor that identifies time references and data descriptions in the caption and matches them with chart data. This information enables authors to compare features emphasized by these two modalities, quickly see mismatches, and make necessary revisions. A user study confirms that our tool is both useful and easy to use when authoring charts and captions.
description: IEEE VIS 2023
Additional file 5 of HOXC6 impacts epithelial-mesenchymal transition and the immune microenvironment through gene transcription in gliomas
Creators: name: Huang, Hui
name: Huo, Zhengyuan
name: Jiao, Jiantong
name: Ji, Wei
name: Huang, Jin
name: Bian, Zheng
name: Xu, Bin
name: Shao, Junfei
name: Sun, Jun
Publisher: name: figshare
Year: 2022
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Hematology

description: Additional file 5: Table S4 Baseline clinical data of TCGA gliomas.
Thysanozoon estacahuitensis Ramos-Sánchez & Bahia & Bastida-Zavala 2020, sp. nov.
Creators: name: Ramos-Sánchez, Mariela
name: Bahia, Juliana
name: Bastida-Zavala, J. Rolando
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Rhabditophora
Polycladida
Pseudoceritidae
Thysanozoon
Thysanozoon estacahuitensis

description: Thysanozoon estacahuitensis sp. nov.
(Figures 14 A–H, 15 A–G)
urn:lsid:zoobank.org:act: D2B05287-4865-4B2F-9975-5EAE1FFF26DB
 Type locality. Estacahuite Beach, Puerto Ángel, Oaxaca (15°40’5.1’N, 96°28’53.3’’W).
 Type material. Two specimens. Holotype : as sagittal sections: UMAR PLAT-036 (sagittal sections of reproductive structures in ten slides; Estacahuite Beach, Puerto Ángel, Oaxaca, southern Mexican Pacific; under rocks, 4 m, Oct 6, 2013, coll. MRS). Paratype : One specimen as whole mount: UMAR PLAT-040, 1 spec. (Estacahuite Beach, Puerto Ángel, Oaxaca, same as holotype).
description: Published as part of Ramos-Sánchez, Mariela, Bahia, Juliana & Bastida-Zavala, J. Rolando, 2020, Five new species of cotylean flatworms (Platyhelminthes: Polycladida: Cotylea) from Oaxaca, southern Mexican Pacific, pp. 49-83 in Zootaxa 4819 (1) on page 75, DOI: 10.11646/zootaxa.4819.1.3, http://zenodo.org/record/3955834
Enhanced quantum state preparation via stochastic prediction of neural network
Creators: name: Li, Chao-Chao
name: He, Run-Hong
name: Wang, Zhao-Ming
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: In pursuit of enhancing the predication capabilities of the neural network, it has been a longstanding objective to create dataset encompassing a diverse array of samples. The purpose is to broaden the horizons of neural network and continually strive for improved prediction accuracy during training process, which serves as the ultimate evaluation metric. In this paper, we explore an intriguing avenue for enhancing algorithm effectiveness through exploiting the knowledge blindness of neural network. Our approach centers around a machine learning algorithm utilized for preparing arbitrary quantum states in a semiconductor double quantum dot system, a system characterized by highly constrained control degrees of freedom. By leveraging stochastic prediction generated by the neural network, we are able to guide the optimization process to escape local optima. Notably, unlike previous methodologies that employ reinforcement learning to identify pulse patterns, we adopt a training approach akin to supervised learning, ultimately using it to dynamically design the pulse sequence. This approach not only streamlines the learning process but also constrains the size of neural network, thereby improving the efficiency of algorithm.
description: 8pages, 8figures
Resonant Inelastic X-Ray Scattering from Valence Excitations in Insulating Copper-Oxides
Creators: name: Abbamonte, P.
name: Burns, C. A.
name: Isaacs, E. D.
name: Platzman, P. M.
name: Miller, L. L.
name: Cheong, S. W.
name: Klein, M. V.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We report resonant inelastic x-ray measurements of insulating La$_2$CuO$_4$ and Sr$_2$CuO$_2$Cl$_2$ taken with the incident energy tuned near the Cu K absorption edge. We show that the spectra are well described in a shakeup picture in 3rd order perturbation theory which exhibits both incoming and outgoing resonances, and demonstrate how to extract a spectral function from the raw data. We conclude by showing {\bf q}-dependent measurements of the charge transfer gap.
description: minor notational changes, discussion of anderson impurity model fixed, references added; accepted by PRL
Computing Fast and Reliable Gravitational Waveforms of Binary Neutron Star Merger Remnants
Creators: name: Easter, Paul J.
name: Lasky, Paul D.
name: Casey, Andrew R.
name: Rezzolla, Luciano
name: Takami, Kentaro
Publisher: name: arXiv
Year: 2018
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Gravitational waves have been detected from the inspiral of a binary neutron-star, GW170817, which allowed constraints to be placed on the neutron star equation of state. The equation of state can be further constrained if gravitational waves from a post-merger remnant are detected. Post-merger waveforms are currently generated by numerical-relativity simulations, which are computationally expensive. Here we introduce a hierarchical model trained on numerical-relativity simulations, which can generate reliable post-merger spectra in a fraction of a second. Our spectra have mean fitting factors of 0.95, which compares to fitting factors of 0.76 and 0.85 between different numerical-relativity codes that simulate the same physical system. This method is the first step towards generating large template banks of spectra for use in post-merger detection and parameter estimation.
description: Submitted to PRL. 6 pages, 4 figures
title: Crossing Wallace’s line: an evolutionarily young gibbon ape leukemia virus like endogenous retrovirus identified from the Philippine flying lemur (Cynocephalus volans)
Creators: name: Tsangaras, Kyriakos
name: Mayer, Jens
name: Greenwood, Alex D.
Publisher: name: Freie Universität Berlin
Year: 2025
Subjects: subject: Wallace’s line
subject: Endogenous retrovirus
subject: Gammaretrovirus
subject: Gibbon ape leukemia virus
subject: Flying lemurs
subject: Southeast Asian mammals
classificationCode: 630
subject: Landwirtschaft und verwandte Bereiche

description: Wallace’s line is a biogeographical barrier to faunal movements between Southeast Asia and the Australo-Papuan region. There are exceptions among rodents and bats, few of which have crossed Wallace’s line. The gibbon ape leukemia viruses (GALV) and koala retrovirus (KoRV) have only been identified in wildlife on the Australo-Papuan side of Wallaces’s Line with the potential exception of partial sequences identified in two microbat fecal samples from China and a recently described GALV relative in a rodent from Africa. Here we describe a group of GALV-like endogenous retroviral sequences from the Southeast Asian flying lemur (Cynocephalus volans) representing the first known description of a primate relative which has been infected, and the germline colonized, by GALVs on the Southeast Asian side of Wallace’s Line.
Single Millisecond Pulsars from Dynamical Interaction Processes in Dense Star Clusters
Creators: name: Ye, Claire S.
name: Kremer, Kyle
name: Ransom, Scott M.
name: Rasio, Frederic A.
Publisher: name: arXiv
Year: 2023
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Globular clusters (GCs) are particularly efficient at forming millisecond pulsars. Among these pulsars, about half lack a companion star, a significantly higher fraction than in the Galactic field. This fraction increases further in some of the densest GCs, especially those that have undergone core collapse, suggesting that dynamical interaction processes play a key role. For the first time, we create N-body models that reproduce the ratio of single-to-binary pulsars in Milky-Way-like GCs. We focus especially on NGC 6752, a typical core-collapsed cluster with many observed millisecond pulsars. Previous studies suggested that an increased rate of neutron star binary disruption in the densest clusters could explain the overabundance of single pulsars in these systems. Here, we demonstrate that binary disruption is ineffective and instead we propose that two additional dynamical processes play the dominant role: (1) tidal disruption of main-sequence stars by neutron stars; and (2) gravitational collapse of heavy white-dwarf-binary merger remnants. Neutron stars formed through these processes may also be associated with fast radio bursts similar to those observed recently in an extragalactic GC.
description: 19 pages, 12 figures, 4 tables. Published at ApJ
Interacting electrons in polygonal quantum dots
Creators: name: Creffield, C E
name: Haeusler, Wolfgang
name: Jefferson, J H
name: Sarkar, Sarben
Publisher: name: arXiv
Year: 1998
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The low-lying eigenstates of a system of two electrons confined within a two-dimensional quantum dot with a hard polygonal boundary are obtained by means of exact diagonalization. The transition from a weakly correlated charge distribution for small dots to a strongly correlated "Wigner molecule" for large dots is studied, and the behaviour at the crossover is determined. In sufficiently large dots, a recently proposed mapping to an effective charge-spin model is investigated, and is found to produce the correct ordering of the energy levels and to give a good first approximation to the size of the level spacings. We conclude that this approach is a valuable method to obtain the low energy spectrum of few-electron quantum dots.
Chrysopa yananica Wu & Liu 2024, comb. nov.
Creators: name: Wu, Jingyu
name: Liu, Xingyue
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Neuroptera
Chrysopidae
Chrysopa
Chrysopa yananica

description: [1] Chrysopa yananica (Yang & Yang, 1989) comb. nov.
(Fig. 77)
Semachrysa yananica Yang & Yang, 1989: 25. Type locality: China (Shaanxi, Yan’an). Holotype in CAU. comb. nov.
Diagnosis. This species is characterized by the head with two small black spots on the vertex, the relatively small compound eyes, the frons and clypeus with small black spots, the terminal palpomere of maxillary and labial palpi not pointed, the thorax without distinct markings, and the basal crossvein of inner gradate series of forewing attached to Psm.
Description. Female. Body length 8.1 mm, forewing length 12.4 mm, hindwing length 11.4 mm.
Head yellow, vertex with two small black spots near middle. Compound eyes relatively small. Antennae yellow, scape and pedicel wider than flagellum. Gena and clypeus with small black spots. Maxillary and labial palpi yellow, terminal palpomere not pointed.
Pronotum quadrate, with short black setae. Mesonotum and metanotum without markings.
Legs with dense setae, without spots. Pretarsal claws brown, without basal dilation.
Forewing short and broad. Pterostigma brown. Costal area with 20–22 crossveins; 13–14 radial crossveins straight. m1 smaller than m2; im ovoid; 7 crossveins between Psm and Psc. c1 smaller than c2, dcc opened. A1 forked, A2 and A3 simple. Inner gradate series with 6–7 crossveins, basal crossvein of inner gradate series meeting Psm; outer gradate series with 6–7 crossveins.
Hindwing narrow. Costal area with 18 crossveins; 13 radial crossveins and 7 psm-psc crossveins present. Inner gradate series with 5 crossveins, outer gradate series with 5 crossveins.
Material. Holotype ♀, China, Shaanxi, Yan’an, 1975.VI.01, Feng Yuan (CAU).
Distribution. China (Shaanxi).
Remarks. Yang and Yang (1989) originally described this species based on a female specimen from Shaanxi, China. This species has many characters that are not congruent with those of Semachrysa: the head with spots on vertex, the antennae without stripes, the frons without spots, the thorax without spots, the terminal palpomere of maxillary and labial palpi not pointed, and the wings without brown shadings. This species also does not belong to the Ankylopterygini because of its small compound eyes and the extremely small spots on gena and the vertex. The previous characters are completely consistent with Chrysopa, which belongs to Chrysopini. Hence, we transfer this species to Chrysopa.
description: Published as part of Wu, Jingyu & Liu, Xingyue, 2024, Systematics of the green lacewing tribe Ankylopterygini Navás, 1910 (Neuroptera: Chrysopidae: Chrysopinae) from China, pp. 1-169 in Zootaxa 5540 (1) on pages 141-149, DOI: 10.11646/zootaxa.5540.1.1, http://zenodo.org/record/14240496
Evaluating analytic gradients on quantum hardware
Creators: name: Schuld, Maria
name: Bergholm, Ville
name: Gogolin, Christian
name: Izaac, Josh
name: Killoran, Nathan
Publisher: name: arXiv
Year: 2018
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: An important application for near-term quantum computing lies in optimization tasks, with applications ranging from quantum chemistry and drug discovery to machine learning. In many settings --- most prominently in so-called parametrized or variational algorithms --- the objective function is a result of hybrid quantum-classical processing. To optimize the objective, it is useful to have access to exact gradients of quantum circuits with respect to gate parameters. This paper shows how gradients of expectation values of quantum measurements can be estimated using the same, or almost the same, architecture that executes the original circuit. It generalizes previous results for qubit-based platforms, and proposes recipes for the computation of gradients of continuous-variable circuits. Interestingly, in many important instances it is sufficient to run the original quantum circuit twice while shifting a single gate parameter to obtain the corresponding component of the gradient. More general cases can be solved by conditioning a single gate on an ancilla.
Shared Information for a Markov Chain on a Tree
Creators: name: Bhattacharya, Sagnik
name: Narayan, Prakash
Publisher: name: arXiv
Year: 2023
Subjects: subject: Information Theory (cs.IT)
subject: FOS: Computer and information sciences

description: Shared information is a measure of mutual dependence among multiple jointly distributed random variables with finite alphabets. For a Markov chain on a tree with a given joint distribution, we give a new proof of an explicit characterization of shared information. The Markov chain on a tree is shown to possess a global Markov property based on graph separation; this property plays a key role in our proofs. When the underlying joint distribution is not known, we exploit the special form of this characterization to provide a multiarmed bandit algorithm for estimating shared information, and analyze its error performance.
description: 13 pages, 4 figures, submitted to IEEE Transactions on Information Theory
title: Sunlight-driven simultaneous CO2 reduction and water oxidation using indium-organic framework heterostructures
Creators: name: Cai, Zhongjie
name: Liu, Hongwei
name: Dai, Jiajun
name: Li, Bao
name: Yang, Liming
name: Wang, Jingyu
name: Zhu, Huaiyong
Publisher: name: Freie Universität Berlin
Year: 2025
Subjects: subject: Photocatalysis
subject: Sustainability
subject: water oxidation
classificationCode: 540
subject: Chemie und zugeordnete Wissenschaften

description: Overall artificial photosynthesis, as a promising approach for sunlight-driven CO2 recycling, requires photocatalysts with efficient light adsorption and separate active sites for coupling with H2O oxidation. Here we show a In-based metal–organic framework (MOF) heterostructure, i.e., In-porphyrin (In-TCPP) nanosheets enveloping an In-NH2-MIL-68 (M68N) core, via a facile one-pot synthesis that utilises competitive nucleation and growth of two organic linkers with In nodes. The coherent interfaces of the core@shell MOFs assure the structural stability of heterostructure, which will function as heterojunctions to facilitate the efficient transfer of photogenerated charge for overall photosynthesis. The In-TCPP shell in MOFs heterostructure improves CO2 adsorption capabilities and visible light absorption to enhance the photocatalytic CO2 reduction. Simultaneously, In-O sites in M68N core efficiently catalyze H2O oxidation, achieving high yields of HCOOH (397.5 μmol g−1 h−1) and H2O2 (321.2 μmol g−1 h−1) under focused sunlight irradiation. The superior performance of this heterostructure in overall photosynthesis, coupled with its straightforward synthesis, shows great potential for mitigating carbon emissions and producing valuable chemicals using solar energy.
title: 03_0969
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
title: Vitamin A concentration in bovine liver and milk does not only depend on characteristics of the farming system
Creators: name: Schulz, Kirsten
name: Bachmann, Martin
name: Raila, Jens
name: Schmitt, Ruth
name: Staufenbiel, Rudolf
name: Scholz, Heiko
name: Wensch-Dorendorf, Monika
name: Ptok, Sebastian
name: Weissenborn, Anke
name: Pieper, Robert
Publisher: name: Freie Universität Berlin
Year: 2025
Subjects: subject: Physiology
subject: FOS: Biological sciences
subject: Risk factors
subject: vitamin A
classificationCode: 630
subject: Landwirtschaft und verwandte Bereiche

description: The study examined the vitamin A status in commercially managed suckler cows and lactating dairy cows and identified primary influencing factors. Liver retinyl ester concentrations were higher in multiparous than primiparous cows (p < 0.01). Pasture availability was associated with higher β-carotene concentrations (p < 0.001). In dairy cows, pasture access during the dry period did not affect any of the parameters assayed. β-Carotene and retinol in milk increased with parity. No vitamin A deficiency or hypervitaminosis A was detected. Liver and milk retinol and retinyl ester concentrations that were analysed in the present study and data from a recent German total diet study were used to estimate the exposure to preformed vitamin A in vulnerable groups (children, 0.5–5 years). 95th percentiles of preformed vitamin A intake do not exceed tolerable upper intake levels in individuals between 1 year and 5 years, but in infants 6 to 12 months of age.
MOESM13 of Modular co-option of cardiopharyngeal genes during non-embryonic myogenesis
Creators: name: PrĂźnster, Maria
name: Ricci, Lorenzo
name: Brown, Federico
name: Tiozzo, Stefano
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Additional file 13. FigureÂ 11: Phalloidin in Polyandrocarpa zorritensis (Styelidae) adult, showing the absence of intersiphonal muscle bands.
CO Multi-line Imaging of Nearby Galaxies (COMING): VI. Radial variations in star formation efficiency
Creators: name: Muraoka, Kazuyuki
name: Sorai, Kazuo
name: Miyamoto, Yusuke
name: Yoda, Moe
name: Morokuma-matsui, Kana
name: Kobayashi, Masato I. N.
name: Kuroda, Mayu
name: Kaneko, Hiroyuki
name: Kuno, Nario
name: Takeuchi, Tsutomu T.
name: Nakanishi, Hiroyuki
name: Watanabe, Yoshimasa
name: Tanaka, Takahiro
name: Yasuda, Atsushi
name: Yajima, Yoshiyuki
name: Shibata, Shugo
name: Salak, Dragan
name: Espada, Daniel
name: Matsumoto, Naoko
name: Noma, Yuto
name: Kita, Shoichiro
name: Komatsuzaki, Ryusei
name: Kajikawa, Ayumi
name: Yashima, Yu
name: Pan, Hsi-An
name: Oi, Nagisa
name: Seta, Masumichi
name: Nakai, Naomasa
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We examined radial variations in molecular-gas based star formation efficiency (SFE), which is defined as star formation rate per unit molecular gas mass, for 80 galaxies selected from the CO Multi-line Imaging of Nearby Galaxies project (Sorai et al. 2019). The radial variations in SFE for individual galaxies are typically a factor of 2 -- 3, which suggests that SFE is nearly constant along galactocentric radius. We found the averaged SFE in 80 galaxies of $(1.69 \pm 1.1) \times 10^{-9}$ yr$^{-1}$, which is consistent with Leroy et al. 2008 if we consider the contribution of helium to the molecular gas mass evaluation and the difference in the assumed initial mass function between two studies. We compared SFE among different morphological (i.e., SA, SAB, and SB) types, and found that SFE within the inner radii ($r/r_{25} < 0.3$, where $r_{25}$ is $B$-band isophotal radius at 25 mag arcsec$^{-2}$) of SB galaxies is slightly higher than that of SA and SAB galaxies. This trend can be partly explained by the dependence of SFE on global stellar mass, which probably relates to the CO-to-H$_2$ conversion factor through the metallicity. For two representative SB galaxies in our sample, NGC 3367 and NGC 7479, the ellipse of $r/r_{25}$ = 0.3 seems to cover not only the central region but also the inner part of the disk, mainly the bar. These two galaxies show higher SFE in the bar than in spiral arms. However, we found an opposite trend in NGC 4303; SFE is lower in the bar than in spiral arms, which is consistent with earlier studies (e.g., Momose et al. 2010). These results suggest diversity of star formation activities in the bar.
description: 28 pages, 12 figures, accepted for publication in PASJ
MOESM3 of Analysis of a large dataset reveals haplotypes carrying putatively recessive lethal and semi-lethal alleles with pleiotropic effects on economically important traits in beef cattle
Creators: name: Jenko, Janez
name: McClure, Matthew
name: Matthews, Daragh
name: McClure, Jennifer
name: Johnsson, Martin
name: Gorjanc, Gregor
name: Hickey, John
Publisher: name: figshare
Year: 2019
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Pharmacology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology

description: Additional file 3: Table S3. SNP alleles for the AA14H3, CH19H2, and SI16H5 haplotypes. The data provided represent the SNP alleles for haplotype (SI16H5) that carries putatively recessive lethal and two haplotypes (AA14H3, CH19H2) that carry semi-lethal alleles.
Additional file 10 of Genome-wide DNA methylation analysis of pulmonary function in middle and old-aged Chinese monozygotic twins
Creators: name: Wang, Tong
name: Wang, Weijing
name: Li, Weilong
name: Duan, Haiping
name: Xu, Chunsheng
name: Tian, Xiaocao
name: Zhang, Dongfeng
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 10: Table S4. Significantfunctional clusters biological process related to FVC by GREAT using binomialtest
Stringy Effects and the Role of the Singularity in Holographic Complexity
Creators: name: Nally, Richard
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: There has been considerable recent interest in holographic complexity. The two leading conjectures on this subject hold that the quantum complexity of the boundary thermofield double state should be dual to either the volume of the Einstein-Rosen bridge connecting the two sides (CV conjecture) or to the action of the Wheeler-de-Witt patch of the bulk spacetime (CA conjecture). Although these conjectures are frequently studied in the context of pure Einstein gravity, from the perspective of string theory it is also natural to consider models of gravity in which general relativity is perturbed by higher powers of the Riemann tensor, suppressed by powers of the string length; in a holographic context, these corrections are dual to corrections in inverse powers of the 't Hooft coupling. In this paper, we investigate the CV and CA conjectures in two stringy models of higher-curvature gravity. We find that the CV complexification rate remains well-behaved, but conversely that these corrections induce new divergences in the CA complexification rate that are absent in pure Einstein gravity. These divergences are intrinsically linked to the singularity, and appear to be generic in higher curvature theories. To the best of our knowledge, infinities originating at the singularity have not yet been observed elsewhere in the literature. We argue that these divergences imply that, in the CA picture, the complexification rate of the boundary theory is a nonanalytic function of the 't Hooft coupling.
description: 45 pages, 17 figures. v2: References added, typo corrected in Eqs. 4.15 and 4.16
Table S2
Creators: name: Sarrigeorgiou, Ioannis
name: Rouka, Erasmia C.
name: Kotsiou, Ourania
name: Perlepe, Garyfallia
name: Gerovasileiou, Efrosini
name: Gourgoulianis, Konstantinos
name: Lymberi, Peggy
name: Zarogiannis, Sotirios
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 320899
subject: Medical physiology not elsewhere classified

description: Natural antibodies targeting LPS in pleural effusions of various etiologies
Linear in temperature correction to the Casimir force
Creators: name: Svetovoy, V. B.
name: Lokhanin, M. V.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We discuss the temperature correction to the Casimir force between nonideal metallic bodies which caused disagreement in the literature. A general method to find the troubling term is proposed that does not require a direct reference to the Lifshitz formula. The linear in temperature correction is shown to survive for nonideal metals. It is important for small separations between bodies tested in the recent experiments.
description: 5 pages, REVTEX, to be published in Phys. Lett. A
MOESM14 of Modular co-option of cardiopharyngeal genes during non-embryonic myogenesis
Creators: name: PrĂźnster, Maria
name: Ricci, Lorenzo
name: Brown, Federico
name: Tiozzo, Stefano
Publisher: name: figshare
Year: 2019
Subjects: subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Additional file 14. FigureÂ 12: ML tree of Nk4.
Evidence for Two Dimensional Anisotropic Luttinger Liquids at Millikelvin Temperatures
Creators: name: Yu, Guo
name: Wang, Pengjie
name: Uzan, Ayelet J.
name: Jia, Yanyu
name: Onyszczak, Michael
name: Singha, Ratnadwip
name: Gui, Xin
name: Song, Tiancheng
name: Tang, Yue
name: Watanabe, Kenji
name: Taniguchi, Takashi
name: Cava, Robert J.
name: Schoop, Leslie M.
name: Wu, Sanfeng
Publisher: name: arXiv
Year: 2023
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: While Landau's Fermi liquid theory provides the standard description for two- and three-dimensional (2D/3D) conductors, the physics of interacting one-dimensional (1D) conductors is governed by the distinct Luttinger liquid (LL) theory. Can a LL-like state, in which electronic excitations are fractionalized modes, emerge in a 2D system as a stable zero-temperature phase? This long-standing question, first brought up by Anderson decades ago, is crucial in the study of non-Fermi liquids but remains unsettled. A recent experiment identified a moiré superlattice of twisted bilayer tungsten ditelluride (tWTe_2) with a small interlayer twist angle as a 2D host of the LL physics at temperatures of a few kelvins. Here we report experimental evidence for a 2D anisotropic LL state in a substantially reduced temperature regime, down to at least 50 mK, spontaneously formed in a tWTe_2 system with a twist angle of ~ 3 degree. While the system is metallic-like and nearly isotropic above 2 K, a dramatically enhanced electronic anisotropy develops in the millikelvin regime, featuring distinct transport behaviors along two orthogonal in-plane directions. In the strongly anisotropic phase, we observe transport characteristics of a 2D LL phase, i.e., the universal power law scaling behaviors in across-wire conductance and a zero-bias dip in the differential resistance along the wire direction. Our results represent a step forward in the search for stable LL physics beyond 1D and related unconventional quantum matter.
description: 24 pages, 4 main figures and 10 extended data figures
Deliverable 2.6 Carbon Dioxide Removals, article 6 of the Paris agreement
Creators: name: ETIP ZIP
Publisher: name: Zenodo
Year: 2025

description: ETIP ZEP and IWG9 have identified the delivery of carbon dioxide removals (CDR) as an importantcomponent of carbon capture and storage (CCS) and essential for the achievement of carbon neutrality in2050 and net negative emissions thereafter. This report describes ETIP ZEP and IWG9’s interactions withrecent policy developments and identifies priorities to support the development of an effective CDR sectorand carbon market that instils trust.
MOESM4 of Analysis of a large dataset reveals haplotypes carrying putatively recessive lethal and semi-lethal alleles with pleiotropic effects on economically important traits in beef cattle
Creators: name: Jenko, Janez
name: McClure, Matthew
name: Matthews, Daragh
name: McClure, Jennifer
name: Johnsson, Martin
name: Gorjanc, Gregor
name: Hickey, John
Publisher: name: figshare
Year: 2019
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Plant Biology

description: Additional file 4: Table S4. Estimated economic effect for the AA14H3, CH19H2, and SI16H5 haplotypes. The data provided represent estimated economic impact for haplotype (SI16H5) that carries putatively recessive lethal and two haplotypes (AA14H3, CH19H2) that carry semi-lethal alleles.
title: Evolution of the Swiss pork production systems and logistics: the impact on infectious disease resilience
Creators: name: Galli, Francesco
name: Perret-Gentil, Saskia
name: Champetier, Antoine
name: Lüchinger, Rita
name: Harisberger, Myriam
name: Kuntzer, Thibault
name: Rieder, Stefan
name: Nathues, Christina
name: Vidondo, Beatriz
name: Lentz, Hartmut
name: Belik, Vitaly
name: Dürr, Salome
Publisher: name: Freie Universität Berlin
Year: 2025
Subjects: subject: Livestock production systems
subject: System evolution
subject: Swine infectious diseases
subject: Disease surveillance
subject: Disease resilience
classificationCode: 630
subject: Landwirtschaft und verwandte Bereiche

description: Livestock production systems are complex and evolve over time, affecting their adaptability to economic, political, and disease-related changes. In Europe, disease resilience is crucial due to threats like the African swine fever virus, which jeopardizes pork production stability. The European Union identifies farm production type as a key risk factor for disease spread, making it important to track changes in farm production types to assess disease risk. However, detailed production type data is often lacking in national databases. For Swiss pig farms, we used prediction and clustering algorithms to classify 9’687 − 11’247 trading farms between 2014 and 2019 by one of eleven production types. We then analyzed the pig trade network and stratified farm centrality measures (ICC and OCC) by production type. We found that 145 farms belonging to three production types have substantially higher ICC and OCC than other farms, suggesting that they could be the target of disease surveillance programs. Our predictions until 2025 show an increase both in overall pig trade network connectivity and in proportion of production types with high ICC and OCC, indicating that the structural changes in the Swiss pig production system may increase infectious disease exposure over time.
Additional file 13 of Genome-wide DNA methylation analysis of pulmonary function in middle and old-aged Chinese monozygotic twins
Creators: name: Wang, Tong
name: Wang, Weijing
name: Li, Weilong
name: Duan, Haiping
name: Xu, Chunsheng
name: Tian, Xiaocao
name: Zhang, Dongfeng
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 13: Table S6. The results ofenrichment analysis for genes clustered in lightsteelblue1 module by DAVID tool.
Table S3
Creators: name: Sarrigeorgiou, Ioannis
name: Rouka, Erasmia C.
name: Kotsiou, Ourania
name: Perlepe, Garyfallia
name: Gerovasileiou, Efrosini
name: Gourgoulianis, Konstantinos
name: Lymberi, Peggy
name: Zarogiannis, Sotirios
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 320899
subject: Medical physiology not elsewhere classified

description: Natural antibodies targeting LPS in pleural effusions of various etiologies
Table S4
Creators: name: Sarrigeorgiou, Ioannis
name: Rouka, Erasmia C.
name: Kotsiou, Ourania
name: Perlepe, Garyfallia
name: Gerovasileiou, Efrosini
name: Gourgoulianis, Konstantinos
name: Lymberi, Peggy
name: Zarogiannis, Sotirios
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 320899
subject: Medical physiology not elsewhere classified

description: Natural antibodies targeting LPS in pleural effusions of various etiologies
Bilayer $t$-$J$-$J_\perp$ Model and Magnetically Mediated Pairing in the Pressurized Nickelate La$_3$Ni$_2$O$_7$
Creators: name: Qu, Xing-Zhou
name: Qu, Dai-Wei
name: Chen, Jialin
name: Wu, Congjun
name: Yang, Fan
name: Li, Wei
name: Su, Gang
Publisher: name: arXiv
Year: 2023
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: The recently discovered nickelate superconductor La$_3$Ni$_2$O$_7$ has a high transition temperature near 80 K under pressure, which offers additional avenues of unconventional superconductivity. Here with state-of-the-art tensor-network methods, we study a bilayer $t$-$J$-$J_\perp$ model for La$_3$Ni$_2$O$_7$ and find a robust $s$-wave superconductive (SC) order mediated by interlayer magnetic couplings. Large-scale density matrix renormalization group calculations find algebraic pairing correlations with Luttinger parameter of $K_{\rm SC} \simeq 1$. Infinite projected entangled-pair state method obtains a nonzero SC order directly in the thermodynamic limit, and estimates a strong pairing strength $\barΔ_z \sim \mathcal{O}(0.1)$. Tangent-space tensor renormalization group simulations further determine a high SC temperature $T_c^*/J \sim \mathcal{O}(0.1)$ and clarify the temperature evolution of SC order. Because of the intriguing orbital selective behaviors and strong Hund's rule coupling in the compound, $t$-$J$-$J_\perp$ model has strong interlayer spin exchange (while negligible interlayer hopping), which greatly enhances the SC pairing in the bilayer system. Such a magnetically mediated strong pairing has also been observed recently in the optical lattice of ultracold atoms. Our accurate and comprehensive tensor-network calculations reveal robust SC order in the bilayer $t$-$J$-$J_\perp$ model and shed light on the high-$T_c$ superconductivity in the pressurized nickelate La$_3$Ni$_2$O$_7$.
description: 5 + 6 pages, 4 + 8 figures
MOESM12 of Modular co-option of cardiopharyngeal genes during non-embryonic myogenesis
Creators: name: PrĂźnster, Maria
name: Ricci, Lorenzo
name: Brown, Federico
name: Tiozzo, Stefano
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Additional file 12. FigureÂ 10: Zic-r.a expression in embryo, oozooid, and blastozooid.
MOESM2 of Analysis of a large dataset reveals haplotypes carrying putatively recessive lethal and semi-lethal alleles with pleiotropic effects on economically important traits in beef cattle
Creators: name: Jenko, Janez
name: McClure, Matthew
name: Matthews, Daragh
name: McClure, Jennifer
name: Johnsson, Martin
name: Gorjanc, Gregor
name: Hickey, John
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Pharmacology

description: Additional file 2: Table S2. Hazard ratios [95% confidence intervals] for postnatal survival of progeny from non-carrier × carrier (HH × Hh) and carrier × carrier (Hh × Hh) matings as compared to the progeny from non-carrier × non-carrier (HH × HH) matings for the 22 identified haplotypes with significant absence or reduced level of homozygosity. The data provided represent survival analysis for different parent haplotype carrier status for several haplotypes with significant absence or reduced level of homozygosity.
A Platform for Far-Infrared Spectroscopy of Quantum Materials at Millikelvin Temperatures
Creators: name: Onyszczak, Michael
name: Uzan, Ayelet J.
name: Tang, Yue
name: Wang, Pengjie
name: Jia, Yanyu
name: Yu, Guo
name: Song, Tiancheng
name: Singha, Ratnadwip
name: Khoury, Jason F.
name: Schoop, Leslie M.
name: Wu, Sanfeng
Publisher: name: arXiv
Year: 2023
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Optical spectroscopy of quantum materials at ultralow temperatures is rarely explored, yet it may provide critical characterizations of quantum phases not possible using other approaches. We describe the development of a novel experimental platform that enables optical spectroscopic studies, together with standard electronic transport, of materials at millikelvin temperatures inside a dilution refrigerator. The instrument is capable of measuring both bulk crystals and micron-sized two-dimensional van der Waals materials and devices. We demonstrate the performance by implementing photocurrent-based Fourier transform infrared spectroscopy on a monolayer WTe$_2$ device and a multilayer 1T-TaS$_2$ crystal, with a spectral range available from the near-infrared to the terahertz regime and in magnetic fields up to 5 T. In the far-infrared regime, we achieve spectroscopic measurements at a base temperature as low as ~ 43 mK and a sample electron temperature of ~ 450 mK. Possible experiments and potential future upgrades of this versatile instrumental platform are envisioned.
description: 14 pages, 6 figures, typos corrected
Monte-Carlo Sampling applied to Multiple Instance Learning for Histological Image Classification
Creators: name: Combalia, Marc
name: Vilaplana, Veronica
Publisher: name: arXiv
Year: 2018
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Machine Learning (cs.LG)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: We propose a patch sampling strategy based on a sequential Monte-Carlo method for high resolution image classification in the context of Multiple Instance Learning. When compared with grid sampling and uniform sampling techniques, it achieves higher generalization performance. We validate the strategy on two artificial datasets and two histological datasets for breast cancer and sun exposure classification.
description: accepted at 4th International Workshop on Deep Learning for Medical Image Analysis (DLMIA), MICCAI 2018, Deep Learning in Medical Image Analysis and Multimodal Learning for Clinical Decision Support, Springer International Publishing, 2018
Figure S1.jpg
Creators: name: Sarrigeorgiou, Ioannis
name: Rouka, Erasmia C.
name: Kotsiou, Ourania
name: Perlepe, Garyfallia
name: Gerovasileiou, Efrosini
name: Gourgoulianis, Konstantinos
name: Lymberi, Peggy
name: Zarogiannis, Sotirios
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 320899
subject: Medical physiology not elsewhere classified

description: Natural antibodies targeting LPS in pleural effusions of various etiologies.