cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Structure, function and evolution of Y-nucleoporins and eukaryotic coatomer components using sequence space walks and tissue-specific expression patterns
Creators: name: Promponas, Vasilis J
name: Ouzounis, Christos
name: Katsani, Katerina R
Publisher: name: F1000 Research Limited
Year: 2019

description: developed novel approaches to explore structural, functional & evolutionary relationships of the Y-complex nucleoporins (Y-Nups), essential components of the eukaryotic nuclear pore [1] obtained all known and newly discovered homologs of Y-Nups and delineated their superfamily relationships by database queries, sequence clustering & iterative profile searches [2] domain decomposition reveals novel composite architectures and previously unknown evolutionary relationships between Y-Nups & other functionally related neighbours [3] obtained strong indications that certain Y-Nups might be involved in moonlighting functions such as DNA repair, RNA processing, cell signaling pathways and mitotic control [4] discovered & further highlighted mis-annotation inconsistencies, encompassing various phylogenetic anomalies & artifactual genomic regions [5] newly detected functional relationships provide an expanded network of Y-Nup interactions, extending functional involvement of Y-Nups in the nuclear pore towards other cellular roles [6] protein superfamily delineation has uncovered subtle sequence similarities between Y-Nup superfamilies space walks across Y-Nups & other known coatomer superfamilies unify all known eukaryotic coatomers beyond the nuclear pore, including transport vesicles & intraflagellar transport [7] eukaryotic endomembrane coatomers, long suspected to be divergently related, now connected at the sequence level few conserved residues in the derived sequence/structure alignments shared by tsequences of coatomer elements in eukaryotes [7] invariant sequence positions are mapped onto known protein structure representatives, supporting detection of divergence patterns at very low, yet significant sequence similarity levels
Measurement of the hydrodynamic forces between two polymer-coated spheres
Creators: name: Bartlett, P.
name: Henderson, S. I.
name: Mitchell, S. J.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: The hydrodynamic forces between Brownian spheres are determined from a measurement of the correlated thermal fluctuations in particle position using a new method, two-particle cross-correlation spectroscopy (TCS). A pair of 1.3 um diameter polymer-coated poly(methyl methacrylate) were held at separations of between 2 um and 20 um using optical traps. The mobility tensor is determined directly from the statistically-averaged Brownian fluctuations of the two spheres. The observed distance dependence of the mobility tensor is in quantitative agreement with low-Reynolds number calculations.
description: 11 pages, 3 figures
Structure and Production of Lambda Baryons
Creators: name: Boros, C.
name: Londergan, J. T.
name: Thomas, A. W.
Publisher: name: arXiv
Year: 1999
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: We discuss the quark parton structure of the $Λ$ baryon and the fragmentation of quarks into $Λ$ baryons. We show that the hyperfine interaction, responsible for the $Δ$-$N$ and $Σ^0$-$Λ$ mass splittings, leads not only to sizeable SU(3) and SU(6) symmetry breaking in the quark distributions of the $Λ$, but also to significant polarized non-strange quark distributions. The same arguments suggest flavor asymmetric quark fragmentation functions and non-zero polarized non-strange quark fragmentation functions. The calculated fragmentation functions give a good description of all measured observables. We predict significant positive $Λ$ polarization in semi-inclusive DIS experiments while models based on SU(3) flavor symmetry predict zero or negative $Λ$ polarization. Our approach also provides a natural explanation for the dependence of the maximum of the $ξ=\ln(1/z)$ spectrum on the mass of the particles produced in $e^+e^-$ annihilation.
description: 24 pages, 9 figures, minor changes
Additional file 1: of BE-FLARE: a fluorescent reporter of base editing activity reveals editing characteristics of APOBEC3A and APOBEC3B
Creators: name: Coelho, Matthew
name: Songyuan Li
name: Pane, Luna
name: Firth, Mike
name: Ciotta, Giovanni
name: Wrigley, Jonathan
name: Cuomo, Maria
name: Maresca, Marcello
name: Taylor, Benjamin
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Figure S1–S6, Table S1–S5, Supplementary methods. Figure S1. BE-FLARE facilitates visual tracking of base edited cells by microscopy. Figure S2. BE-FLARE base editing over time reveals dynamics of base editing and tracking of edited cells with GFP. Figure S3. Raw data relating to Fig. 4a b and c, and quantification of turbo-RFP positive cells. Figure S4. BE-FLARE expression after editing. Figure S5. Expression of native vs codon-optimised rat APOBEC-1 BE3 reveals superior expression after codon optimisation. Figure S6. Sequence alignment of APOBECs highlights divergent loop1 region. Supplementary methods. Table S1. Primers for guide RNA cloning. Table S2. Primers for amplicon sequencing. Table S3. Amplicon sequencing summary: BE-FLARE (BFP). Table S4. Amplicon sequencing summary: EMX1. Table S5. Amplicon sequencing summary: VEGFA. Digital droplet PCR probes. Sequences of constructs. (DOCX 1133 kb)
title: ADCO, Grènetier de Cîteaux : comptes (1499-1503) (11 H 1173), f. 00102
Creators: name: de la Côte-d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2019
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: comptes
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Grènetier de Cîteaux : comptes (1499-1503), Archives départementales de la Côte-d'Or, (11 H 1173). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Grènetier de Cîteaux : comptes (1499-1503), Archives départementales de la Côte-d'Or, (11 H 1173), f. 00102, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: abbaye de Cîteaux
Ilex aquifolium Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Aquifoliales
Aquifoliaceae
Ilex
Ilex aquifolium

description: Ilex aquifolium Linnaeus, Species Plantarum 1: 125. 1753.
"Habitat in Europa australiori, Japonia, Virginia [sic]." RCN: 1028.
 Lectotype (Pedley in George, Fl. Australia 22: 201. 1984): Herb. Linn. No. 173.1 (LINN).
 Generitype of Ilex Linnaeus (vide Hitchcock, Prop. Brit. Bot.: 126. 1929).
 Current name:  Ilex aquifolium  L. (Aquifoliaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part I), pp. 586-598 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 587, DOI: 10.5281/zenodo.291971
Additional file 1: of Aspulvinone O, a natural inhibitor of GOT1 suppresses pancreatic ductal adenocarcinoma cells growth by interfering glutamine metabolism
Creators: name: Sun, Weiguang
name: Luan, Shanshan
name: Qi, Changxing
name: Tong, Qingyi
name: Yan, Shan
name: Li, Hua
name: Zhang, Yonghui
Publisher: name: figshare
Year: 2019
Subjects: Biophysics
Biochemistry
Space Science
Medicine
Pharmacology
Chemical Sciences not elsewhere classified
Developmental Biology

description: Figure S1. 1H NMR Spectrum of Aspulvinone O in MeOH-d4. Figure S2. 13C NMR Spectrum of Aspulvinone O in MeOH-d4. Figure S3. Original Western blot images. (DOCX 1258 kb).
Search for the Nondimerized Quantum Nematic Phase in the Spin-1 Chain
Creators: name: Fáth, G.
name: Sólyom, J.
Publisher: name: arXiv
Year: 1995
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: Chubukov's proposal concerning the possibility of a nondimerized quantum nematic phase in the ground-state phase diagram of the bilinear-biquadratic spin-1 chain is studied numerically. Our results do not support the existence of this phase, but they rather indicate a direct transition from the ferromagnetic into the dimerized phase.
description: REVTEX, 14 pages +8 PostScript figures
Entanglement Hamiltonians of lattice models via the Bisognano-Wichmann theorem
Creators: name: Giudici, G.
name: Mendes-Santos, T.
name: Calabrese, P.
name: Dalmonte, M.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Quantum Gases (cond-mat.quant-gas)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The modular (or entanglement) Hamiltonian correspondent to the half-space-bipartition of a quantum state uniquely characterizes its entanglement properties. However, in the context of lattice models, its explicit form is analytically known only for the Ising chain and certain free theories in one-dimension. In this work, we provide a throughout investigation of entanglement Hamiltonians in lattice models obtained via the Bisognano-Wichmann theorem, which provides an explicit functional form for the entanglement Hamiltonian itself in quantum field theory. Our study encompasses a variety of one- and two-dimensional models, supporting diverse quantum phases and critical points, and, most importantly, scanning several universality classes, including Ising, Potts, and Luttinger liquids. We carry out extensive numerical simulations based on the density-matrix-renormalization-group method, exact diagonalization, and quantum Monte Carlo. In particular, we compare the exact entanglement properties and correlation functions to those obtained applying the Bisognano-Wichmann theorem on the lattice. We carry out this comparison on both the eigenvalues and eigenvectors of the entanglement Hamiltonian, and expectation values of correlation functions and order parameters. Our results evidence that, as long as the low-energy description of the lattice model is well-captured by a Lorentz-invariant quantum field theory, the Bisognano-Wichmann theorem provides a qualitatively and quantitatively accurate description of the lattice entanglement Hamiltonian. The resulting framework paves the way to direct studies of entanglement properties utilizing well-established statistical mechanics methods and experiments.
description: 19 pages, 28 figures including appendix
Renormalization-group study of gate charge effects in Josephson-junction chains
Creators: name: Choi, M. Y.
name: Rhee, Sung Wu
name: Lee, Minchul
name: Choi, J.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: We study the quantum phase transition in a chain of superconducting grains, coupled by Josephson junctions, with emphasis on the effects of gate charges induced on the grains. At zero temperature the system is mapped onto a two-dimensional classical Coulomb gas, where the gate charge plays the role of an imaginary electric field. Such a field is found relevant in the renormalization-group transformation and to change the nature of the superconductor-insulator transition present in the system, tending to suppress quantum fluctuations and helping establish superconductivity. On the basis of this observation, we propose the zero-temperature phase diagram on the plane of the gate charge and the energy ratio.
description: 2 figures, to appear in Phys. Rev. B
On wave function renormalization and related aspects in heavy fermion effective field theories
Creators: name: Steininger, Sven
name: Meißner, Ulf-G.
name: Fettes, Nadia
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We reconsider the question of wave function renormalization in heavy fermion effective field theories. In particular, we work out a simple and efficient scheme to define the wave function renormalization with respect to the lowest order heavy fermion propagator. The method presented is free of a set of ambiguities which arise in heavy fermion effective field theories. In this context, we discuss the approaches used in the literature so far. We also calculate the fourth order pion mass contribution to the nucleon mass shift and discuss the tree and loop contributions to the electric Sachs form factor of the nucleon.
description: 25 pp, JHEP.cls, uses epsf+epsfig, 2 figs, some corrections
MOESM1 of Lipid metabolism of phenol-tolerant Rhodococcus opacus strains for lignin bioconversion
Creators: name: Henson, William
name: Fong-Fu Hsu
name: Dantas, Gautam
name: Moon, Tae
name: Foston, Marcus
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Developmental Biology
subject: Inorganic Chemistry
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Figure S1. Double bond (DB) numbers of mycolic acid (MA) species. A. Distribution of mycolic acid DB numbers. B. Average mycolic acid DB numbers. The average DB number was calculated using the following equation: Average DB number = ∑Fini, where F is the fraction of the total mycolic acids with a particular double bond number and n is the corresponding double bond number. WTG = WT strain grown in 1 g/L glucose, 40G = evol40 grown in 1 g/L glucose. WTLP = WT strain grown in 0.75 g/L phenol, 40LP = evol40 strain grown in 0.75 g/L phenol, 40HP = evol40 strain grown in 1.5 g/L phenol. MA percentage is defined as the total ion counts of each category (i.e. DB number) divided by the total ion counts of all detected MA species in the sample. Bars represent the average of three replicates, and error bars represent one standard deviation. For A, statistical significance was calculated using a one mean, two tailed Student’s t test with P
The artisanal and small-scale mining (ASM) sector and its importance for EU cooperation with resource-rich developing and emerging countries
Creators: name: Carstens, Johanna
Publisher: name: Zenodo
Year: 2017

description: This policy brief presents key facts about the ASM sector, its importance, opportunities and challenges, its relevance for the EU’s cooperation with resource-rich developing and emerging countries and specific areas for potential support engagements.
Ilex cassine Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Aquifoliales
Aquifoliaceae
Ilex
Ilex cassine

description: Ilex cassine Linnaeus, Species Plantarum 1: 125. 1753.
"Habitat in Carolina." RCN: 1029.
 Lectotype (González Gutiérrez & Sierra Calzado in Greuter & Rankin, Fl. Republ. Cuba, ser. A, 9(1): 10. 2004): [icon] "Agrifolium Carolinense foliis dentatis baccis rubris" in Catesby, Nat. Hist. Carolina 1: 31, t. 31. 1730.
 Current name:  Ilex cassine  L. (Aquifoliaceae).
 Note: See Edwin (in Castanea 28: 49-54. 1963), who discussed the name, and reproduced the Catesby plate (p. 52).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part I), pp. 586-598 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 587, DOI: 10.5281/zenodo.291971
Association of “Big Five” Personality with Perceived Stress in Medical Postgraduates: A Cross-sectional Study
Creators: name: Donthu, Raj Kiran
Publisher: name: figshare
Year: 2021
Subjects: subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Applied Psychology
subject: Personality, Social and Criminal Psychology

description: Medical postgraduates are exposed to more time in patient care and thereby higher stress. Personality is one of the important factors associated with stress. Studies exist in profiling personality traits and also assessing stress in medical professionals. However, in India, to the best of our knowledge, there are only few studies linking personality traits with stress in different branches of medicine.
A hidden symmetry in quantum gravity
Creators: name: Ananth, Sudarshan
name: Brink, Lars
name: Majumdar, Sucheta
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The action integral contains more information than the equations of motion. We have previously shown that there are signs of an extended exceptional symmetry for N=8 supergravity in four dimensions. The symmetry is such that the fields used in the Lagrangian are not representations of the symmetry. Instead one has to add representations to obtain a representation of the extended symmetry group. In this paper we discuss an extended symmetry in four-dimensional gravity which is the Ehlers symmetry in three dimensions. It cannot be spanned by the helicity states of four-dimensional gravity but it can be realised once we treat the helicity states just as field variables of the functional integral, which can be changed like variables in any integral. We also explain how this symmetry is inherent to formulations of N=8 supergravity in four dimensions through a truncation in the field space to pure gravity.
description: 13 pages
A New Analysis of Charge Symmetry Violation in Parton Distributions
Creators: name: Boros, C.
name: Steffens, F. M.
name: Londergan, J. T.
name: Thomas, A. W.
Publisher: name: arXiv
Year: 1999
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: To date, the strongest indication of charge symmetry violation in parton distributions has been obtained by comparing the $F_2$ structure functions from CCFR neutrino data and NMC muon data. We show that in order to make precise tests of charge symmetry with the neutrino data, two conditions must be satisfied. First, the nuclear shadowing calculations must be made explicitly for neutrinos, not simply taken from muon data on nuclei. Second, the contribution of strange and charm quarks should be calculated explicitly using next-to-leading order [NLO] QCD, and the ``slow rescaling'' charm threshold correction should not be applied to the neutrino data. When these criteria are satisfied, the comparison is consistent with charge symmetry within the experimental errors and the present uncertainty in the strange quark distribution of the nucleon.
description: 18 pages, 4 figures
Offene Sprechstunde Forschungsdatenmanagement Universität Hildesheim (Universitätsbibliothek).
Creators: name: Strauch, Annette
Publisher: name: Zenodo
Year: 2019
Subjects: Sprechstunde
Forschungsdatenmanagement

description: Ab dem Wintersemester 2019/20 werden wir als zusätzliche Serviceleistung für alle Forscherinnen und Forscher der SUH eine offene Sprechstunde rund um das Forschungsdatenmanagement anbieten! Die Termine: 23.10. 08.11. 20.11. 04.12. Uhrzeit: immer von 10:00 Uhr – 12:00 Uhr Ort: Uni Hauptcampus, Bibliothek, Raum B 117
Vortex charge and impurity effects based on quasiclassical theory
Creators: name: Masaki, Yusuke
Publisher: name: arXiv
Year: 2018
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We investigate charge densities around the vortex cores of an s-wave and a chiral p-wave superconductor (SC) in two dimension within quasiclassical theory. We consider contributions of particle-hole asymmetry through gradient expansions in first order of a quasiclassical parameter using augmented quasiclassical theory. The chiral p-wave SC has two inequivalent vortices: one is charged and the other is uncharged on the basis of Bogoliubov--de Gennes (BdG) equation. We explain this qualitatively distinct charges also by the augmented quasiclassical theory. In addition, we find that much larger charge is induced for the charged vortex of the chiral p-wave SC compared with the vortex of the s-wave SC in the clean system. We also confirm this enhancement through quantitative comparison with results based on the BdG theory. We also study effects of Born-type impurities using self-energy formalism and find that the larger charge density is rather suppressed in contrast to the s-wave's one. Furthermore we study the local density of states as another equilibrium property of particle-hole asymmetry.
description: 11 pages, 6 figures
Lettre de Hubert de Folard à Jean-François Séguier, 1748-11-30
Creators: name: Folard, Hubert de
name: De Folard, Hubert
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2022

description: [transcription] A Bayreuth, le 20 Novembre 1748.
Permettez-moi de vous demander, Monsieur, si vous connaissez de personne ou de réputation M. l’abbé Seriman, vénitien. On m’en a parlé comme d’une personne de la plus haute naissance. Sa famille est, dit-on, originaire de Perse et doit être fort riche. Le sujet en question est ou doit être un poète distingué en Italie. Connaissez-vous le songe d’Aristique dont on le dit auteur ? Je vous serais, Monsieur, bien obligé de me faire part de ce que vous saurez ou avez pu apprendre à son sujet. Vous pouvez être assuré de ma discrétion et vous en ouvrir confidamment à moi. SAR Madame la Margrave de Bayreuth a insisté de le savoir parce que ce virtuoso, si tant est qu’on ne lui en ait pas imposé, veut venir passer quelque temps ici. Pardon Monsieur de la liberté que je prends de m’adresser à vous pour cet effet et de finir si tôt mais il le faut pour ne pas perdre l’occasion de la poste qui va partir. Vous connaissez les sentiments d’estime et d’attachement que je vous ai voués pour toute ma vie.

Folard

Faites, je vous prie, ma cour à M. le Marquis Scipione Maffei.
description: [personnes citées] Frédérique Sophie Wilhelmine de Prusse, margravine de Bayreuth, Zaccaria Seriman
description: [reférence bibliographique citée] 
Seriman, Zaccaria, Sogno d'Aristippo, in versi sciolti, sln
description: Source: [établissement de conservation] Nîmes, Bibliothèque Carré d'Art [cote]ms. 249_13, fol. 46
description: Source: ark:/12148/btv1b10015559p
Perturbative Expansion around the Gaussian Effective Action: The Background Field Method
Creators: name: Lee, Geon Hyoung
name: Yee, Jae Hyung
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We develop a systematic method of the perturbative expansion around the Gaussian effective action based on the background field method. We show, by applying the method to the quantum mechanical anharmonic oscillator problem, that even the first non-trivial correction terms greatly improve the Gaussian approximation.
description: 16 pages, 3 eps figures, uses RevTeX and epsf. Errors in Table 1 are corrected and new references are added
MOESM1 of FGFR1 expression defines clinically distinct subtypes in pancreatic cancer
Creators: name: Haq, Farhan
name: You-Na Sung
name: Inkeun Park
name: Kayani, Mahmood
name: Faizah Yousuf
name: Seung-Mo Hong
name: Ahn, Sung-Min
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Computational Biology

description: Additional file 1. Additional figures and table.
MOESM1 of Evolution of cis- and trans-regulatory divergence in the chicken genome between two contrasting breeds analyzed using three tissue types at one-day-old
Creators: name: Wang, Qiong
name: Jia, Yaxiong
name: Wang, Yuan
name: Jiang, Zhihua
name: Zhou, Xiang
name: Zhang, Zebin
name: Nie, Changsheng
name: Li, Junying
name: Yang, Ning
name: Qu, Lujiang
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Figure S1. Assessment of our analysis pipeline for estimating allele specific expression. Figure S2. Assessment of our local reads method for estimating allele specific expression. Figure S3. Classification of genes in brain. Figure S4. Classification of genes in liver. Figure S5. Classification of genes in muscle. Figure S6. Intersection of different groups of cis- and trans- regulatory genes. Figure S7. The ratio of the numbers of non-synonymous SNPs to the numbers of synonymous SNPs (pN/pS) in different groups of cross 2. Figure S8. The ratio of the numbers of non-synonymous SNPs to the numbers of synonymous SNPs (pN/pS) in different groups of cross 3. Table S1. The summary of differential expression genes in hybrid and purebred progenies Table S2. The difference of gene proportion of each categories between different groups Table S3. The gene list of intersection of each group
title: ADCO, Cartulaire de Cîteaux pour le prieuré de Gilly : rachat de la rente due à Saint-Germain-des-Prés (c. 1501), Cart. 194 (11 H 636), 64 folios, f. 0060
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2015
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire
subject: LaMOP

description: Cartulaire de Cîteaux pour le prieuré de Gilly : rachat de la rente due à Saint-Germain-des-Prés (c. 1501), Archives départementales de la Côte-d'Or, Cart. 194 (11 H 636), 64 folios, f. 0060, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de Cîteaux pour le prieuré de Gilly : rachat de la rente due à Saint-Germain-des-Prés (c. 1501), Archives départementales de la Côte-d'Or, Cart. 194 (11 H 636), 64 folios, f. 0060, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Trichilia aquifolia P. Wilson 1924
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Sapindales
Meliaceae
Trichilia
Trichilia aquifolia

description: Ilex cuneifolia Linnaeus, Species Plantarum 1: 125. 1753.
"Habitat in America meridonali." RCN: 1031.
 Lectotype (Pennington, Fl. Neotropica 28: 277. 1757): [icon] " Ilex foliis cuneiformibus" in Plumier in Burman, Pl. Amer.: 109, t. 118, f. 2. 1757.
 Current name:  Trichilia aquifolia  P. Wilson (Meliaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part I), pp. 586-598 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 587, DOI: 10.5281/zenodo.291971
MOESM2 of The association between BRAF mutation class and clinical features in BRAF-mutant Chinese non-small cell lung cancer patients
Creators: name: Lin, Quan
name: Zhang, Haoran
name: Ding, Huaxin
name: Qian, Jun
name: Lizaso, Analyn
name: Lin, Jing
name: Han-Zhang, Han
name: Xiang, Jianxing
name: Li, Yuping
name: Zhu, Hong
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 2. Additional tables.
Nonequilibrium Electron Dynamics In Pump-Probe Spectroscopy: Role Of Excited Phonon Populations
Creators: name: Abdurazakov, O.
name: Nevola, D.
name: Rustagi, A.
name: Freericks, J. K.
name: Dougherty, D. B.
name: Kemper, A. F.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We study the role of excited phonon populations in the relaxation rates of nonequilibrium electrons using a nonequilibrium Green's function formalism. The transient modifications in the phononic properties are accounted for by self-consistently solving the Dyson equation for the electron and phonon Green's functions. The pump induced changes manifest in both the electronic and phononic spectral functions. We find that the excited phonon populations suppress the decay rates of nonequilibrium electrons due to enhanced phonon absorption. The increased phonon occupation also sets the nonequilibrium decay rates and the equilibrium scattering rates apart. The decay rates are found to be time-dependent, and this is illustrated in the experimentally observed population decay of photoexcited $\mathrm{Bi}_{1.5}\mathrm{Sb}_{0.5} \mathrm{Te}_{1.7}\mathrm{Se}_{1.3}$.
Additional file 3: of Amylopectin structure and crystallinity explains variation in digestion kinetics of starches across botanic sources in an in vitro pig model
Creators: name: Martens, Bianca
name: Gerrits, Walter
name: Bruininx, Erik
name: Schols, Henk
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Table S4. Rotated factor pattern, eigenvalues and proportion variance explained by principle components in multivariate analysis of subdataset 21. Table S5. Pearson correlation coefficients for starch properties and digestion kinetics, within subdataset 21,2. (DOCX 36Â kb)
D7.5: Stakeholder Advisory Board
Creators: name: Antunes, Paula
name: Santos, Rui
name: Perperidou, Dimitra
name: Osann, Anna
Publisher: name: Zenodo
Year: 2017

description: This document describes the process of setting up and operation of the DIANA Advisory Board (AB). The principal role of the AB is to act as a consultation and validation body for the project. The AB will be comprised of diverse representatives from DIANA user/stakeholder communities and leading experts in the fields of water management, space applications in agriculture, agricultural and environmental policies, irrigation engineering and business management who will provide advice for development of the project. AB members are also expected to support the rollout and upscale of DIANA’s piloted value propositions by acting as “project ambassadors”.
Effective temperature of an aging powder
Creators: name: Sellitto, M.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: The aging dynamics and the fluctuation-dissipation relation between the spontaneous diffusion induced by a random noise and the drift motion induced by a small stirring force are numerically investigated in a 3D schematic model of compacting powder: a gravity-driven lattice-gas with kinetic constraints. The compaction dynamics is characterized by a super-aging behaviour and, in analogy with glasses, exhibits a purely dynamical time-scale dependent effective temperature. A simple experiment to measure this quantity is suggested.
description: 4 pages, 4 figures; to appear in Phys. Rev. E
Imaging radial velocity planets with SPHERE
Creators: name: Zurlo, A.
name: Mesa, D.
name: Desidera, S.
name: Messina, S.
name: Gratton, R.
name: Moutou, C.
name: Beuzit, J. L.
name: Biller, B.
name: Boccaletti, A.
name: Bonavita, M.
name: Bonnefoy, M.
name: Bhowmik, T.
name: Brandner, W.
name: Buenzli, E.
name: Chauvin, G.
name: Cudel, M.
name: D'Orazi, V.
name: Feldt, M.
name: Hagelberg, J.
name: Janson, M.
name: Lagrange, A. M.
name: Langlois, M.
name: Lannier, J.
name: Lavie, B.
name: Lazzoni, C.
name: Maire, A. L.
name: Meyer, M.
name: Mouillet, D.
name: Peretti, S.
name: Perrot, C.
name: Potiron, P. J.
name: Salter, G.
name: Schmidt, T.
name: Sissa, E.
name: Vigan, A.
name: Delboulbe, A.
name: Petit, C.
name: Ramos, J.
name: Rigal, F.
name: Rochat, S.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We present observations with the planet finder SPHERE of a selected sample of the most promising radial velocity (RV) companions for high-contrast imaging. Using a Monte Carlo simulation to explore all the possible inclinations of the orbit of wide RV companions, we identified the systems with companions that could potentially be detected with SPHERE. We found the most favorable RV systems to observe are : HD\,142, GJ\,676, HD\,39091, HIP\,70849, and HD\,30177 and carried out observations of these systems during SPHERE Guaranteed Time Observing (GTO). To reduce the intensity of the starlight and reveal faint companions, we used Principle Component Analysis (PCA) algorithms alongside angular and spectral differential imaging. We injected synthetic planets with known flux to evaluate the self-subtraction caused by our data reduction and to determine the 5$σ$ contrast in the J band $vs$ separation for our reduced images. We estimated the upper limit on detectable companion mass around the selected stars from the contrast plot obtained from our data reduction. Although our observations enabled contrasts larger than 15 mag at a few tenths of arcsec from the host stars, we detected no planets. However, we were able to set upper mass limits around the stars using AMES-COND evolutionary models. We can exclude the presence of companions more massive than 25-28 \MJup around these stars, confirming the substellar nature of these RV companions.
description: 14 pages, 11 figures, accepted by MNRAS
A Framework for Creative-Visualization Opportunities Workshops
Creators: name: Kerzner, Ethan
name: Goodwin, Sarah
name: Dykes, Jason
name: Jones, Sara
name: Meyer, Miriah
Publisher: name: arXiv
Year: 2018
Subjects: subject: Human-Computer Interaction (cs.HC)
subject: FOS: Computer and information sciences

description: Applied visualization researchers often work closely with domain collaborators to explore new and useful applications of visualization. The early stages of collaborations are typically time consuming for all stakeholders as researchers piece together an understanding of domain challenges from disparate discussions and meetings. A number of recent projects, however, report on the use of creative visualization-opportunities (CVO) workshops to accelerate the early stages of applied work, eliciting a wealth of requirements in a few days of focused work. Yet, there is no established guidance for how to use such workshops effectively. In this paper, we present the results of a 2-year collaboration in which we analyzed the use of 17 workshops in 10 visualization contexts. Its primary contribution is a framework for CVO workshops that: 1) identifies a process model for using workshops; 2) describes a structure of what happens within effective workshops; 3) recommends 25 actionable guidelines for future workshops; and 4) presents an example workshop and workshop methods. The creation of this framework exemplifies the use of critical reflection to learn about visualization in practice from diverse studies and experience.
Comocladia dodonaea Urb.
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Sapindales
Anacardiaceae
Comocladia
Comocladia dodonaea

description: Ilex dodonaea Linnaeus, Species Plantarum 1: 125. 1753.
"Habitat in America meridonali." RCN: 1032.
 Lectotype (Howard, Fl. Lesser Antilles 5: 97. 1989): [icon] “Dodonaea” in Plumier, Nov. Pl. Amer.: 20, t. 12. 1703.
 Current name:  Comocladia dodonaea  (L.) Urb. (Aquifoliaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part I), pp. 586-598 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 587, DOI: 10.5281/zenodo.291971
Additional file 2: of Amylopectin structure and crystallinity explains variation in digestion kinetics of starches across botanic sources in an in vitro pig model
Creators: name: Martens, Bianca
name: Gerrits, Walter
name: Bruininx, Erik
name: Schols, Henk
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Table S2. Rotated factor pattern, eigenvalues and proportion variance explained of principle components in multivariate analysis of subdatasetÂ 11. Table S3. Pearson correlation coefficients for starch properties and digestion kinetics, within subdataset 11,2. (DOCX 36Â kb)
On the freedom in representing quantum operations
Creators: name: Lin, Junan
name: Buonacorsi, Brandon
name: Laflamme, Raymond
name: Wallman, Joel J.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We discuss the effects of a gauge freedom in representing quantum information processing devices, and its implications for characterizing these devices. We demonstrate with experimentally relevant examples that there exists equally valid descriptions of the same experiment which distribute errors differently among objects in a gate-set, leading to different error rates. Consequently, it can be misleading to attach a concrete operational meaning to figures of merit for individual gate-set elements. We propose an alternative operational figure of merit for a gate-set, the mean variation error, and a protocol for measuring this figure.
description: Fixed some typos, mostly in the example of section 1 and in appendix A
Alternanthera pungens Kunth
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Caryophyllales
Amaranthaceae
Alternanthera
Alternanthera pungens

description: Illecebrum achyranthum Linnaeus, Species Plantarum, ed. 2, 1: 299. 1762, nom. illeg.
"Habitat in Turcomannia." RCN: 1681.
 Replaced synonym: Achyranthes repens L. (1753).
Type not designated.
Original material: as replaced synonym.
 Current name:  Alternanthera pungens  (L.) Kunth (Amaranthaceae).
 Note: An illegitimate replacement name for Achyranthes repens L. (1753).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part I), pp. 586-598 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 587, DOI: 10.5281/zenodo.291971
de Haas-van Alphen Oscillations in a Superconducting State at High Magnetic Fields
Creators: name: Dukan, S.
name: Tesanovic, Z.
Publisher: name: arXiv
Year: 1995
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: Low-temperature quantum oscillations of the dHvA amplitude are shown to persist far below the upper critical field of a strongly type-II superconductor, due to the gapless nature of the BCS quasiparticle spectrum in high fields. The dHvA amplitude in the superconducting state is smaller than its normal state countpart by factor ~[max(T,Gamma]/delta]**2, where Gamma is the damping. This factor reflects the presence of a small gapless portion of the fermi surface, surrounded by regions where the BCS gap is large. The agreement with recent experimental data on V3Si is very good.
description: 11 pages+ 1 figure available on request from dukan@eta.pha.jhu.edu, to appear in Phys. Rev. Lett.
Additional file 1: of Amylopectin structure and crystallinity explains variation in digestion kinetics of starches across botanic sources in an in vitro pig model
Creators: name: Martens, Bianca
name: Gerrits, Walter
name: Bruininx, Erik
name: Schols, Henk
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Table S1. In vitro digestion of all analysed starches. (DOCX 36Â kb)
Neutrino Propagation in Matter
Creators: name: Balantekin, A. B.
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The enhancement of neutrino oscillations in matter is briefly reviewed. Exact and approximate solutions of the equations describing neutrino oscillations in matter are discussed. The role of stochasticity of the media that the neutrinos propagate through is elucidated.
description: 17 pages, 5 figures. Expanded version of a talk at the Slansky Memorial Symposium, Los Alamos, May 1998
MOESM1 of Investigating modifications to participant information materials to improve recruitment into a large randomized trial
Creators: name: Haynes, Richard
name: Chen, Fang
name: Wincott, Elizabeth
name: Dayanandan, Rejive
name: Lay, Michael
name: Parish, Sarah
name: Bowman, Louise
name: Landray, Martin
name: Armitage, Jane
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 1: Coordinating centre and collaborators. Table S1. Baseline characteristics of participants included in randomized comparisons of (A) summary PIL versus standard PIL and (B) modified PIL versus standard PIL. Appendix 1. Original participant information leaflet. Appendix 2. Invitation letter with one-page trial summary. Appendix 3. Modified participant information leaflet.
Revisiting Agegraphic Dark Energy in Brans-Dicke Cosmology
Creators: name: Zadeh, M. Abdollahi
name: Sheykhi, A.
Publisher: name: arXiv
Year: 2018
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We explore a spatially homogeneous and isotropic Friedmann-Robertson-Walker (FRW) universe which is filled with agegraphic dark energy (ADE) with mutual interaction with pressureless dark matter in the background of Brans-Dicke (BD) theory. We consider both original and new type of agegraphic dark energy (NADE) and further assume the sign of the interaction term can change during the history of the Universe. We obtain the equation of state parameter, the deceleration parameter and the evolutionary equation for the sign-changeable interacting ADE and NADE in BD theory. We find that, in both models, the equation of state parameter, $w_D$, cannot cross the phantom line, although they can predict the Universe evolution from the early deceleration phase to the late time acceleration, compatible with observations. We also investigate the sound stability of these models and find out that both models cannot show a signal of stability for different model parameters.
description: 10 pages, 14 figures
title: ADCO, Cartulaire de Cîteaux pour les domaines de Beaune (XVe siècle), Cart. 177 (11 H 289), 197 folios, f. 0269
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2015
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi

description: Cartulaire de Cîteaux pour les domaines de Beaune (XVe siècle), Archives départementales de la Côte-d'Or, Cart. 177 (11 H 289), 197 folios, f. 0269, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de Cîteaux pour les possessions d’Izeure (XVe siècle), Archives départementales de la Côte-d'Or, Cart. 177 (11 H 289), 197 folios, f. 0269, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v