cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
MOESM4 of Transcriptome analysis reveals key genes involved in the regulation of nicotine biosynthesis at early time points after topping in tobacco (Nicotiana tabacum L.)
Creators: name: Qin, Yan
name: Bai, Shenglong
name: Li, Wenzheng
name: Sun, Ting
name: Galbraith, David
name: Yang, Zefeng
name: Zhou, Yun
name: Sun, Guiling
name: Wang, Bingwu
Publisher: name: figshare
Year: 2020
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Additional file 4: Figure S4. Classification statistics of DEGs according to the GO annotations. The GO classification is indicated on the abscissa, with the ordinate providing the percentage of the number of genes (left) and the number of genes (right).
Spelaeoecia capax Kornicker 1990
Creators: name: Kornicker, Louis S.
name: Iliffe, Thomas M.
name: Harrison-Nelson, Elizabeth
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Ostracoda
Halocyprida
Thaumatocyprididae
Spelaeoecia
Spelaeoecia capax

description: Spelaeoecia capax Kornicker 1990 in Kornicker et al. 1990
 Spelaeoecia capax Kornicker 1990 in Kornicker et al. 1990: 23, fig. 14.— Kornicker & Iliffe 1998: 10, figs. 3a, 4–16.— 2000: 85.
 Holotype. USNM 193449, empty carapace in alcohol (sex and age unknown).
 Type locality. Alfonso Dean Blue Hole, Long Island, Great Bahama Bank.
 Material. Oven Rock Cave, Great Guana Cay: Sta 98-010: USNM 1021384, 7 specimens in alcohol (3 adult males, 3 adult females, 1 juvenile). Sta 98-012: USNM 1021385, 3 specimens in alcohol (1 adult male, 1 adult female, 1 A- 1 male). Sta 98-014: USNM 1021386, 1 adult female in alcohol. Sta 99-066: USNM 1021387, 1 adult male in alcohol; USNM 1021388, 2 adult females in alcohol. Sta 00-005: USNM 1021389, 6 specimens (2 adult males, 3 adult females, 1 juvenile). Sta 01-013: USNM 1021390, 8 specimens including adult males.
 Distribution. Great Bahama Bank: Exuma Cays: Great Guana Cay (Oven Rock Cave) and Lee Stocking Island, Norman’s Pond Cay (Norman’s Pond Cave). Long Island (Alphonso Dean Blue Hole).
 Supplementary descriptions. Carapace size (length, height in mm): Adult male: USNM 1021418, 2.88, 1.33. Adult female:
USNM 1021387, 2 specimens: 2.90, 1.38; 3.05, 1.38. USNM 1021389, 2 specimens: 3.08, 1.41; 3.01, 1.44.
 Remarks. This species was previously reported in Oven Rock Cave in 1993 (Kornicker & Iliffe 1998: 90, 91) and 1996 (Kornicker & Iliffe 2000: 93). The present collection shows that the species continued to be in the cave from 1993 to 2000 and was not affected by climatic events.
description: Published as part of Kornicker, Louis S., Iliffe, Thomas M. & Harrison-Nelson, Elizabeth, 2007, Ostracoda (Myodocopa) from Anchialine Caves and Ocean Blue Holes, pp. 1-151 in Zootaxa 1565 (1) on page 36, DOI: 10.11646/zootaxa.1565.1.1, http://zenodo.org/record/5095810
Where is the second planet in the HD 160691 planetary system?
Creators: name: Gozdziewski, K.
name: Konacki, M.
name: Maciejewski, A. J.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The set of radial velocity measurements of the HD 160691 has been recently published by Jones et.al 2002 (MNRAS). It reveals a linear trend that indicates a presence of the second planet in this system. The preliminary double-Keplerian orbital fit to the observations, announced by the discovery team, describes a highly unstable, self-disrupting configuration. Because the observational window of the HD 160691 system is narrow, the orbital parameters of the hypothetical second companion are unconstrained. In this paper we try to find out whether a second giant planet can exist up to the distance of Jupiter and search for the dynamical constraints on its orbital parameters. Our analysis employs a combination of fitting algorithms and simultaneous examination of the dynamical stability of the obtained orbital fits. It reveals that if the semi-major axis of the second planet is smaller than $\simeq 5.2$ AU, the observations are consistent with quasi-periodic, regular motions of the system confined to the islands of various low-order mean motion resonances, e.g., 3:1, 7:2, 4:1, 5:1, or to their vicinity. In such cases the second planet has smaller eccentricity $\simeq 0.2-0.5$ than estimated in the previous works. We show that the currently available Doppler data rather preclude the 2:1 mean motion resonance expected by some authors to be present in the HD 160691 planetary system. We also demonstrate that the MEGNO-penalty method, developed in this paper, which is a combination of the genetic minimization algorithm and the MEGNO analysis, can be efficiently used for predicting stable planetary configurations when only a limited number of observations is given or the data do not provide tight constraints on the orbital elements.
description: 20 pages, 3 tables, 13 figures (in low resolution suitable for publishing in astro-ph), the preprint with high resolution images can be downloaded from http://www.astri.uni.torun.pl/~chris/hd160691.ps.gz (3.4MB). Submitted to ApJ
Non-exponential magnetic relaxation in magnetic nanoparticles for hyperthermia
Creators: name: Gresits, I.
name: Thuroczy, Gy.
name: Sagi, O.
name: Kollarics, S.
name: Csosz, G.
name: Markus, B. G.
name: Nemes, N. M.
name: Hernandez, M. Garcia
name: Simon, F.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Applied Physics (physics.app-ph)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Magnetic nanoparticle based hyperthermia emerged as a potential tool for treating malignant tumours. The efficiency of the method relies on the knowledge of magnetic properties of the samples; in particular, knowledge of the frequency dependent complex magnetic susceptibility is vital to optimize the irradiation conditions and to provide feedback for material science developments. We study the frequency-dependent magnetic susceptibility of an aqueous ferrite suspension for the first time using non-resonant and resonant radiofrequency reflectometry. We identify the optimal measurement conditions using a standard solenoid coil, which is capable of providing the complex magnetic susceptibility up to 150 MHz. The result matches those obtained from a radiofrequency resonator for a few discrete frequencies. The agreement between the two different methods validates our approach. Surprisingly, the dynamic magnetic susceptibility cannot be explained by an exponential magnetic relaxation behavior even when we consider a particle size-dependent distribution of the relaxation parameter.
description: 5 pages, 4 figures, plus Supplementary Materials
title: AI3SD Video: Ontologies, Natural Language, Annotation and Chemistry
Creators: name: Batchelor, Colin
Publisher: name: University of Southampton
Year: 2021
Subjects: subject: AI, AI3SD Event, Chemistry, Data Science, Datasets, Ontologies, OWL, RDF, Research Data Management, Semantic Web, Semantics, SPARQL

description: Ontologies have a wide range of uses beyond the semantic web. If you have had a productive conversation with an intelligent assistant such as Siri or Alexa, then you have used an ontology, perhaps without realising it. In this talk I talk about some of the varied ways ontologies are used in practice and what weâve done at the Royal Society of Chemistry.
Dispersionless Integrable Hierarchy via Kodaira-Spencer Gravity
Creators: name: He, Weiqiang
name: Li, Si
name: Tang, Xinxing
name: Yoo, Philsang
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mathematical Physics (math-ph)
subject: High Energy Physics - Theory (hep-th)
subject: Quantum Algebra (math.QA)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: We explain how dispersionless integrable hierarchy in 2d topological field theory arises from the Kodaira-Spencer gravity (BCOV theory). The infinitely many commuting Hamiltonians are given by the current observables associated to the infinite abelian symmetries of the Kodaira-Spencer gravity. We describe a BV framework of effective field theories that leads to the B-model interpretation of dispersionless integrable hierarchy.
description: 28 pages. Comments are welcome
Experimental evidence for 56Ni-core breaking from the low-spin structure of the N=Z nucleus 58Cu
Creators: name: Lisetskiy, A. F.
name: Pietralla, N.
name: Honma, M.
name: Schmidt, A.
name: Schneider, I.
name: Gade, A.
name: von Brentano, P.
name: Otsuka, T.
name: Mizusaki, T.
name: Brown, B. A.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Nuclear Experiment (nucl-ex)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Low-spin states in the odd-odd N=Z nucleus 58Cu were investigated with the 58Ni(p,n gamma)58Cu fusion evaporation reaction at the FN-tandem accelerator in Cologne. Seventeen low spin states below 3.6 MeV and 17 new transitions were observed. Ten multipole mixing ratios and 17 gamma-branching ratios were determined for the first time. New detailed spectroscopic information on the 2+,2 state, the Isobaric Analogue State (IAS) of the 2+,1,T=1 state of 58Ni, makes 58Cu the heaviest odd-odd N=Z nucleus with known B(E2;2+,T=1 --> 0+,T=1) value. The 4^+ state at 2.751 MeV, observed here for the first time, is identified as the IAS of the 4+,1,T=1 state in 58Ni. The new data are compared to full pf-shell model calculations with the novel GXPF1 residual interaction and to calculations within a pf5/2 configurational space with a residual surface delta interaction. The role of the 56Ni core excitations for the low-spin structure in 58Cu is discussed.
description: 15 pages, 7 figures, submitted to Phys. Rev. C
Standard Software Architecture in Scientific Computing
Creators: name: ISABEL DELGADO-RUZ
Publisher: name: figshare
Year: 2021
Subjects: subject: Neuroscience
subject: 80309 Software Engineering
subject: FOS: Computer and information sciences
subject: Computer Software
subject: 89999 Information and Computing Sciences not elsewhere classified

description: Here I present a basic design (software architecture) for scientific software. Ex?amples are written in Matlab, but any other language can adopt the same logical structure. The main idea is to have: a modular design, simple, minimalist and reusable. Simplifying as well the documentation and readability for effective recycling.
MOESM5 of Transcriptome analysis reveals key genes involved in the regulation of nicotine biosynthesis at early time points after topping in tobacco (Nicotiana tabacum L.)
Creators: name: Qin, Yan
name: Bai, Shenglong
name: Li, Wenzheng
name: Sun, Ting
name: Galbraith, David
name: Yang, Zefeng
name: Zhou, Yun
name: Sun, Guiling
name: Wang, Bingwu
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Physiology
subject: Pharmacology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Plant Biology
subject: Computational Biology

description: Additional file 5: Figure S5. KEGG overview of DEGs after topping in tobacco. The numbers in the picture represent the DEGs that were annotated to the metabolic pathway, with the percentage representing the ratio of this count to the number of DEGs annotated to the total metabolic pathway.
Thermal and radiation driving can produce observable disk winds in hard-state X-ray binaries
Creators: name: Higginbottom, Nick
name: Knigge, Christian
name: Sim, Stuart A.
name: Long, Knox S.
name: Matthews, James H.
name: Hewitt, Henrietta A.
name: Parkinson, Edward J.
name: Mangham, Sam W.
Publisher: name: arXiv
Year: 2020
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: X-ray signatures of outflowing gas have been detected in several accreting black-hole binaries, always in the soft state. A key question raised by these observations is whether these winds might also exist in the hard state. Here, we carry out the first full-frequency radiation hydrodynamic simulations of luminous ($\rm{L = 0.5 \, L_{\mathrm{Edd}}}$) black-hole X-ray binary systems in both the hard and the soft state, with realistic spectral energy distributions (SEDs). Our simulations are designed to describe X-ray transients near the peak of their outburst, just before and after the hard-to-soft state transition. At these luminosities, it is essential to include radiation driving, and we include not only electron scattering, but also photoelectric and line interactions. We find powerful outflows with $\rm{\dot{M}_{wind} \simeq 2 \,\dot{M}_{acc}}$ are driven by thermal and radiation pressure in both hard and soft states. The hard-state wind is significantly faster and carries approximately 20 times as much kinetic energy as the soft-state wind. However, in the hard state the wind is more ionized, and so weaker X-ray absorption lines are seen over a narrower range of viewing angles. Nevertheless, for inclinations $\gtrsim 80^{\circ}$, blue-shifted wind-formed Fe XXV and Fe XXVI features should be observable even in the hard state. Given that the data required to detect these lines currently exist for only a single system in a {\em luminous} hard state -- the peculiar GRS~1915+105 -- we urge the acquisition of new observations to test this prediction. The new generation of X-ray spectrometers should be able to resolve the velocity structure.
description: Accepted for publication by MNRAS
Low Energy Consequences of Five Dimensional SO(10)
Creators: name: Kyae, Bumseok
name: Lee, Chin-Aik
name: Shafi, Qaisar
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We consider five dimensional (5D) supersymmetric SO(10) compactified on the orbifold $S^1/(Z_2\times Z_2')$ such that the SO(10) gauge symmetry is broken on both fixed points (branes), and the residual gauge symmetry is $SU(3)_c\times SU(2)_L\times U(1)_Y\times U(1)_X$. We explore one example in which the gauge symmetries on the two branes are respectively $SU(5)\times U(1)_X$ and $SU(4)_c\times SU(2)_L\times SU(2)_R$, and the MSSM gauge symmetry is recovered by the usual Higgs mechanism. We discuss how fermion masses and mixings can be understood in this framework by introducing a flavor $U(1)_F$ symmetry. Unification of the MSSM gauge couplings and proton stability are also considered. An order of magnitude increase in sensitivity could reveal proton decay.
description: 1+23 pages, 2 figures, comments added, version to appear in NPB
Spelaeoecia sagax Kornicker 1990
Creators: name: Kornicker, Louis S.
name: Iliffe, Thomas M.
name: Harrison-Nelson, Elizabeth
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Ostracoda
Halocyprida
Thaumatocyprididae
Spelaeoecia
Spelaeoecia sagax

description: Spelaeoecia sagax Kornicker 1990 in Kornicker et al. 1990
 Spelaeoecia sagax Kornicker 1990, in Kornicker et al. 1990: 15, figs. 9–13.
 Holotype. USNM 193446, adult male.
 Type locality. Sagittarius Blue Hole, Sweeting’s Cay, Grand Bahama Island, Little Bahama Bank.
 Material. Sagittarius Blue Hole: 29 May 1989: USNM 1021402, 2 specimens (1 adult male, 1 adult female); 29 Mar 1991: USNM 1021403, 10 specimens (4 adult males, 6 adult females); Sta 00-002: USNM 1021404, 5 specimens; Sta 01-016: USNM 1021405, 31 specimens. Virgo Blue Hole, Sweeting's Cay, Grand Bahama Island, Little Bahama Bank, Sta 01-015: USNM 1021406, 3 specimens (1 adult male).
 Distribution. Little Bahama Bank, Sweeting's Cay (Sagittarius Blue Hole and Virgo Blue Hole).
 Supplementary descriptions. Carapace size (length, height in mm): Adult male: USNM 1021402, 1.68, 0.94. Adult female: USNM 1021402, 1.75, 0.93.
 Remarks. Kornicker et al. (1990: 15) reported this species in Sagittarius Blue Hole from collections made in 1984 and 1987. The present collections made in 1989, 1991, and 2002 show that the species has continued to inhabit the cave and was not affected by intermediate climatic events. The species is reported for the first time from Virgo Blue Hole.
description: Published as part of Kornicker, Louis S., Iliffe, Thomas M. & Harrison-Nelson, Elizabeth, 2007, Ostracoda (Myodocopa) from Anchialine Caves and Ocean Blue Holes, pp. 1-151 in Zootaxa 1565 (1) on pages 50-51, DOI: 10.11646/zootaxa.1565.1.1, http://zenodo.org/record/5095810
Combining hard and soft decoders for hypergraph product codes
Creators: name: Grospellier, Antoine
name: Grouès, Lucien
name: Krishna, Anirudh
name: Leverrier, Anthony
Publisher: name: arXiv
Year: 2020
Subjects: subject: Quantum Physics (quant-ph)
subject: Information Theory (cs.IT)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: Hypergraph product codes are a class of constant-rate quantum low-density parity-check (LDPC) codes equipped with a linear-time decoder called small-set-flip (SSF). This decoder displays sub-optimal performance in practice and requires very large error correcting codes to be effective. In this work, we present new hybrid decoders that combine the belief propagation (BP) algorithm with the SSF decoder. We present the results of numerical simulations when codes are subject to independent bit-flip and phase-flip errors. We provide evidence that the threshold of these codes is roughly 7.5% assuming an ideal syndrome extraction, and remains close to 3% in the presence of syndrome noise. This result subsumes and significantly improves upon an earlier work by Grospellier and Krishna (arXiv:1810.03681). The low-complexity high-performance of these heuristic decoders suggests that decoding should not be a substantial difficulty when moving from zero-rate surface codes to constant-rate LDPC codes and gives a further hint that such codes are well-worth investigating in the context of building large universal quantum computers.
description: 17 pages, 4 figures. Comments welcome
Deviation of ergodic averages for area-preserving flows on surfaces of higher genus
Creators: name: Forni, Giovanni
Publisher: name: arXiv
Year: 2004
Subjects: subject: Dynamical Systems (math.DS)
subject: FOS: Mathematics

description: We prove a substantial part of a conjecture of Kontsevich and Zorich on the Lyapunov exponents of the Teichmuller geodesic flow on the deviation of ergodic averages for generic conservative flows on higher genus surfaces. The result on the Teichmuller flow is formulated in terms of a (symplectic) cocycle on the real cohomology bundle over the moduli space of holomorphic differentials introduced by Kontsevich and Zorich. We prove that such a cocycle is non-uniformly hyperbolic, that is, all of its Lyapunov exponents are different from zero. In particular, the number of strictly positive exponents is equal to the genus of the surface. From this theorem we derive that ergodic integrals of smooth functions for generic area-preserving flows on higher genus surfaces grow with time according to a power-law asymptotics with a number of terms equal to the genus of the surface and stricltly positive exponents equal to the non-negative Lyapunov exponents of the Kontsevich-Zorich cocycle. In particular, for conservative flows on surfaces of higher genus, the deviation of ergodic averages for a generic smooth function obeys a power law with a strictly positive exponent and, consequently, the Denjoy-Koksma inequality does not hold. The derivation of the deviation theorem relies in a fundamental way on the notion of invariant distribution for flows on surfaces and the related notion of basic current for the orbit foliation.
description: 103 pages, published version
Additional file 1 of Prediction of blood-based biomarkers and subsequent design of bisulfite PCR-LDR-qPCR assay for breast cancer detection
Creators: name: Bacolod, Manny
name: Jianmin Huang
name: Giardina, Sarah
name: Feinberg, Philip
name: Aashiq Mirza
name: Swistel, Alexander
name: Soper, Steven
name: Barany, Francis
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Supplement 1. The cohorts analyzed for biomarker discovery. Legends: PT (primary tumors), SN (solid normal), PB (peripheral blood), Met (metastasis), Imm (immune cells). Supplement 2. List of primers used for the multiplex PCR-LDR-qPCR assay. Supplement 3. Genomic information for the breast cancer-specific CpG sites interrogated in the multiplex PCR, LDR, qPCR assay described in this report. Supplement 4. A. Statistical summary of the β values (methylation level) for 3 CpG markers across major types of cancer. β value ranges from 0 (ummethylated) to 1 (completely methylated). PT = primary tumor; SN = solid normal. B-D. Statistical comparison (for each of the marker) between each subgroup. Supplement 5. Relationship between CpG methylation and Primary Tumor Stage. Supplement 6. Relationship between CpG methylation and molecular subtypes of breast cancer. Supplement 7. Relationship between CpG methylation and patient age. Supplement 8. Relationship between CpG methylation and patient race. Supplement 9 Relationship between CpG methylation and patient ethnicity. Supplement 10. Relationship between CpG methylation and gene expression.
Constraint on the fifth force through perihelion precession of planets
Creators: name: Sun, Bing
name: Cao, Zhoujian
name: Shao, Lijing
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The equivalence principle is important in fundamental physics. The fifth force, as a describing formalism of the equivalence principle, may indicate the property of an unknown theory. Dark matter is one of the most mysterious objects in the current natural science. It is interesting to constrain the fifth force of dark matter. We propose a new method to use perihelion precession of planets to constrain the long-range fifth force of dark matter. Due to the high accuracy of perihelion precession observation, and the large difference of matter composition between the Sun and planets, we get one of the strongest constraints on the fifth force of dark matter. In the near future, the BepiColombo mission will be capable to improve the test by another factor of ten.
description: 7 pages, 2 figures
Additional file 4 of Movement behaviour of two social urticating caterpillars in opposite hemispheres
Creators: name: Uemura, Mizuki
name: Perkins, Lynda
name: Zalucki, Myron
name: Battisti, Andrea
Publisher: name: figshare
Year: 2020
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 4 Image PDF Monte Garzon, Veneto, Italy, one of the three fieldsite where Thaumetopoea pityocampa pre-pupation processions were studied. Quantitative data were collected from processions at first sighting along the footpath, represented as red circles. Clearings and human attended areas shaded in white, are suitable and preferred bivouac/pupation sites for T. pityocampa larvae.
On the rotational evolution of solar- and late-type stars, its magnetic origins, and the possibility of stellar gyrochronology
Creators: name: Barnes, Sydney A.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We propose a simple interpretation of the rotation period data for solar- and late-type stars. The open cluster and Mt. Wilson star observations suggest that rotating stars lie primarily on two sequences, initially called I and C. Some stars lie in the intervening gap. These sequences, and the fractional numbers of stars on each sequence evolve systematically with cluster age, enabling us to construct crude rotational isochrones allowing `stellar gyrochronology', a procedure, upon improvement, likely to yield ages for individual field stars. The age and color dependences of the sequences allow the identification of the underlying mechanism, which appears to be primarily magnetic. The majority of solar- and late-type stars possess a dominant Sun-like, or Interface magnetic field, which connects the convective envelope both to the radiative interior of the star and to the exterior where winds can drain off angular momentum. These stars spin down Skumanich-style. An age-decreasing fraction of young G, K, and M stars, which are rapid rotators, possess only a Convective field which is not only inefficient in depleting angular momentum, but also incapable of coupling the surface convection zone to the inner radiative zone, so that only the outer zone is spun down, and on an exponential timescale. These stars do not yet possess large-scale dynamos. The large-scale magnetic field associated with the dynamo, apparently created by the shear between the decoupled radiative and convective zones, (re)couples the convective and radiative zones and drives a star from the Convective to the Interface sequence through the gap on a timescale that increases as stellar mass decreases. (Abstract is truncated here.)
description: 32 pages, 6 figures (4 in color), accepted by ApJ
ALMA reveals a large structured disk and nested rotating outflows in DG Tau B
Creators: name: de Valon, A.
name: Dougados, C.
name: Cabrit, S.
name: Louvet, F.
name: Zapata, L. A.
name: Mardones, D.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Space Physics (physics.space-ph)
subject: FOS: Physical sciences

description: We present Atacama Large Millimeter Array (ALMA) Band 6 observations at 14-20 au spatial resolution of the disk and CO(2-1) outflow around the Class I protostar DG Tau B in Taurus. The disk is very large, both in dust continuum (R$_{\rm eff,95\%}$=174 au) and CO (R$_{CO}$=700 au). It shows Keplerian rotation around a 1.1$\pm$0.2 M$_{\odot}$ central star and two dust emission bumps at $r$ = 62 and 135 au. These results confirm that large structured disks can form at an early stage where residual infall is still ongoing. The redshifted CO outflow at high velocity shows a striking hollow cone morphology out to 3000 au with a shear-like velocity structure within the cone walls. These walls coincide with the scattered light cavity, and they appear to be rooted within $ 70^{\circ}$). The properties of the conical walls are suggestive of the interaction between an episodic inner jet or wind with an outer disk wind, or of a massive disk wind originating from 2-5 au. However, further modeling is required to establish their origin. In either case, such massive outflow may significantly affect the disk structure and evolution.
The importance of discovering a 3:2 twin-peak QPO in a ULX or how to solve the puzzle of intermediate mass black holes
Creators: name: Abramowicz, Marek A.
name: Kluzniak, Wlodek
name: McClintock, Jeffrey E.
name: Remillard, Ronald A.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Recently, twin-peak QPOs have been observed in a 3:2 ratio for three Galactic black-hole microquasars with frequencies that have been shown to scale as 1/M, as expected for general relativisitic motion near a black hole. It may be possible to extend this result to distinguish between the following two disparate models that have been proposed for the puzzling ultraluminous X-ray sources (ULXs): (1) an intermediate-mass black hole M ~1000 solar mass) radiating very near the Eddington limit and (2) a conventional black hole (M ~ 10 solar mass) accreting at a highly super-Eddington rate with its emission beamed along the rotation axis. We suggest that it may be possible to distinguish between these models by detecting the counterpart of a Galactic twin-peak QPO in a ULX: the expected frequency for the intermediate-mass black hole model is only about 1 Hz, whereas, for the conventional black hole model the expected frequency would be the ~100 Hz value observed for the Galactic microquasars.
description: 3 p., 2 figs
Probing the electromagnetic fields in ultrarelativistic collisions with leptons from $Z^0$ decay and charmed mesons
Creators: name: Sun, Yifeng
name: Plumari, Salvatore
name: Greco, Vincenzo
Publisher: name: arXiv
Year: 2020
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Ultrarelativistic heavy ion collisions are expected to generate a huge electromagnetic field, $eB \approx 10^{18}\, Gauss$, that induces a splitting of the directed flow, $v_1=\left\langle p_x/p_T \right\rangle $, of charged particles and anti-particles. Such a splitting for charmed meson manifests even for neutral particle/anti-particles pairs ($D^0, \overline{D}^0$), hence being also a unique probe of the formation of the quark-gluon plasma phase. For the first time here we show that electromagnetic field may generate a $v_1(D^0) - v_1( \overline{D}^0)$ as huge as the one recently observed at LHC against early expectations. Within this new research topic we point out a novel measurement: $v_1$ of leptons from $Z^0$ decay and its correlation to that of $D$ and $B$ mesons. The correlation for $Δv_1$ of $l^{+} - l^{-}$, $D^0-\overline{D}^0$ and $B^0-\overline{B}^0$ would provide a strong probe of the electromagnetic origin of the splitting and hence of the formation of a quark-gluon plasma phase with heavy quarks as degrees of freedom. The case of the $v_1({l^{\pm}})$ presents features due to the peculiar form of the $p_T$ spectrum never appreciated before in the study of heavy ion collisions. We specifically predict a sudden change of the $Δv_1(p_T)$ of leptons at $p_T=45$ GeV$/c$, that can be traced back to a universal relation of $Δv_1$ with the slope of the $p_T$ particle distribution and the integrated effect of the Lorentz force.
description: 6 pages, 4 figures
Real-time detection of every Auger recombination in a self-assembled quantum dot
Creators: name: Lochner, Pia
name: Kurzmann, Annika
name: Kerski, Jens
name: Stegmann, Philipp
name: König, Jürgen
name: Wieck, Andreas D.
name: Ludwig, Arne
name: Lorke, Axel
name: Geller, Martin
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Auger recombination is a non-radiative process, where the recombination energy of an electron-hole pair is transferred to a third charge carrier. It is a common effect in colloidal quantum dots that quenches the radiative emission with an Auger recombination time below nanoseconds. In self-assembled QDs, the Auger recombination has been observed with a much longer recombination time in the order of microseconds. Here, we use two-color laser excitation on the exciton and trion transition in resonance fluorescence on a single self-assembled quantum dot to monitor in real-time every quantum event of the Auger process. Full counting statistics on the random telegraph signal give access to the cumulants and demonstrate the tunability of the Fano factor from a Poissonian to a sub-Poissonian distribution by Auger-mediated electron emission from the dot. Therefore, the Auger process can be used to tune optically the charge carrier occupation of the dot by the incident laser intensity; independently from the electron tunneling from the reservoir by the gate voltage. Our findings are not only highly relevant for the understanding of the Auger process, it also demonstrates the perspective of the Auger effect for controlling precisely the charge state in a quantum system by optical means.
description: 17 pages
BEYOND SWEETNESS: EXPLORING SUBSTRATE INHIBITION IN SUGAR ALCOHOL OXIDATION
Creators: name: Latona, Oluwadayo Adesina
name: Olawale, Ifeoluwa Temitope
Publisher: name: ZAP journals
Year: 2024
Subjects: Sugar Alcohols
Kinetics
Alkaline KMnO4
Oxidation Mechanism
Health Impact

description: Sugar alcohols, recognized as polyols, emerge as promising sugar substitutes due to their similar appearance and sweetness properties, despite being neither alcohols nor sugars in the traditional sense. This paper explores the distinctive characteristics of sugar alcohols, emphasizing their lower calorie content and reduced negative health impacts compared to conventional sugars. Unlike sugars, sugar alcohols exhibit limited absorption into the bloodstream, resulting in minimal effects on blood sugar levels and offering protection against tooth decay by resisting bacterial fermentation in the mouth.

Studies indicate that sugar alcohols can contribute to health improvement, marking a departure from the potential adverse effects associated with regular sugars. The relative sweetness of specific sugar alcohols—sorbitol, mannitol, maltitol, erythritol, and lactitol—varies, with their taste perceived as considerably less sweet than traditional sugars, often accompanied by a minty or cool flavor. While previous research has reported the kinetics of sugar alcohols' reactions with various oxidizing agents, there remains a dearth of comprehensive studies on the oxidation of sugar alcohols compared to sugars.

This paper addresses this research gap by providing insights into the kinetics and mechanism of the alkaline KMnO4 oxidation of two specific sugar alcohols, D-sorbitol and D-dulcitol. The investigation delves into the intricacies of this oxidation process, shedding light on the reactions that occur and the underlying mechanisms governing these transformations. By elucidating the kinetics and mechanisms involved, this study contributes valuable knowledge to the understanding of sugar alcohols' chemical behavior, offering potential applications in diverse fields, from health-conscious food production to eco-friendly chemical processes.
Entwicklung und Operationalisierung eines Zielkonzepts zur Erreichung gesellschaftlich erwünschter Biodiversitätsziele in der Agrarlandschaft
Creators: name: Heinrich, Barbara
name: Wietzke, Alexander
name: Polaschegg, Marcus
name: Van Waveren, Clara-Sophie
name: Heinrich, Barbara
name: Wietzke, Alexander
name: Polaschegg, Marcus
name: Van Waveren, Clara-Sophie
Publisher: name: Unknown
Year: 2019
Subjects: subject: Agricultural and Food Policy
subject: Environmental Economics and Policy
subject: Land Economics/Use
subject: Biodiversität
subject: Agrarlandschaft
subject: Konzeptentwicklung

description: Der Biodiversitätsschwund in Agrarlandschaften wird mittlerweile von einer breiten Öffentlichkeit und politisch vielfältig diskutiert. Forderungen, den Trend zu stoppen oder umzukehren, finden zunehmend Gehör. Jedoch herrscht weitgehend Unklarheit darüber, welche konkreten Veränderungen es in welcher Größenordnung in Agrarlandschaften bedarf, um den Biodiversitätsschwund zu stoppen und eine Trendumkehr zu erreichen.In der hier vorgestellten Forschungsarbeit werden Biodiversitätsziele für die Agrarlandschaft definiert und ein Zielkonzept entwickelt, welches Kriterien enthält, die a) aus ökologischer Sicht die Erreichung dieser Ziele erwarten lassen und b) für die Agrarlandschaft konkret anwendbar sind (Operationalisierbarkeit). Ergebnis ist das Konzept ‚Biodiversitätsziele für Agrarlandschaften‘ und seine konkrete Anwendung auf vier Beispielbetrieben.
The Particle Spectrum of Heterotic Compactifications
Creators: name: Donagi, Ron
name: He, Yang-Hui
name: Ovrut, Burt A.
name: Reinbacher, Rene
Publisher: name: arXiv
Year: 2004
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Algebraic Geometry (math.AG)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: Techniques are presented for computing the cohomology of stable, holomorphic vector bundles over elliptically fibered Calabi-Yau threefolds. These cohomology groups explicitly determine the spectrum of the low energy, four-dimensional theory. Generic points in vector bundle moduli space manifest an identical spectrum. However, it is shown that on subsets of moduli space of co-dimension one or higher, the spectrum can abruptly jump to many different values. Both analytic and numerical data illustrating this phenomenon are presented. This result opens the possibility of tunneling or phase transitions between different particle spectra in the same heterotic compactification. In the course of this discussion, a classification of SU(5) GUT theories within a specific context is presented.
description: 77 pages, 3 figures
title: AI3SD Video: Preserving Structural Motifs in Machine-Learning Approaches to Modeling Water Clusters
Creators: name: Bilbrey, Jenna A.
Publisher: name: University of Southampton
Year: 2021
Subjects: subject: AI, AI3SD Event, Artificial Intelligence, Chemistry, Graphs, Machine Intelligence, Machine Learning, ML, Molecules Discovery, Networks

description: Chemical structures are naturally viewed as collections of atoms connected through bonds, and graph theory provides a natural tool for capturing that intuition in a concrete mathematical fashion. Over the past several years, graph neural networks have become increasingly popular for modeling chemical systems. To build on this work, the multi-laboratory ExaLearn project, part of the DOE Exascale Computing Project, is developing novel capabilities that combine state-of-the-art machine-learning techniques with high-performance computing to enable the rapid exploration of chemical space on exascale-class systems. Water clusters offer an interesting use case for the development of machine-learning approaches that preserve intermolecular interactions and structural motifs. We apply a dataset of ~5 million hydrogen-bonded water clusters that display interesting long-range structural patterns to explore unique challenges in property prediction and molecular generation.
[1] J. A. Bilbrey, J. P. Heindel, M. Schram, P. Bandyopadyay, S. S. Xantheas, S. Choudhury. âA look inside the black box: Using graph-theoretical descriptors to interpret a Continuous-Filter Convolutional Neural Network (CF-CNN) trained on the global and local minimum energy structures of neutral water clusters,â J. Chem. Phys., 2020, 153, 024302.
[2] S. Choudhury, J. A. Bilbrey, L. Ward, S. S. Xantheas, I. Foster, J. P. Heindel, B. Blaiszik, M. E. Schwarting. âHydroNet: Benchmark Tasks for Preserving Long-range Interactions and Structural Motifs in Predictive and Generative Models for Molecular Data,â Machine Learning and the Physical Sciences workshop at NeurIPS, 2020.
Kernel Operations on the GPU, with Autodiff, without Memory Overflows
Creators: name: Charlier, Benjamin
name: Feydy, Jean
name: Glaunès, Joan Alexis
name: Collin, François-David
name: Durif, Ghislain
Publisher: name: arXiv
Year: 2020
Subjects: subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: The KeOps library provides a fast and memory-efficient GPU support for tensors whose entries are given by a mathematical formula, such as kernel and distance matrices. KeOps alleviates the major bottleneck of tensor-centric libraries for kernel and geometric applications: memory consumption. It also supports automatic differentiation and outperforms standard GPU baselines, including PyTorch CUDA tensors or the Halide and TVM libraries. KeOps combines optimized C++/CUDA schemes with binders for high-level languages: Python (Numpy and PyTorch), Matlab and GNU R. As a result, high-level "quadratic" codes can now scale up to large data sets with millions of samples processed in seconds. KeOps brings graphics-like performances for kernel methods and is freely available on standard repositories (PyPi, CRAN). To showcase its versatility, we provide tutorials in a wide range of settings online at \url{www.kernel-operations.io}.
description: 6 pages
Deeveyinae Kornicker & Iliffe 1985
Creators: name: Kornicker, Louis S.
name: Iliffe, Thomas M.
name: Harrison-Nelson, Elizabeth
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Ostracoda
Halocyprida
Deeveyidae

description: Subfamily Deeveyinae Kornicker & Iliffe 1985   Type Genus. Deeveya Kornicker & Iliffe 1985: 476.
 Diagnosis. Carapace without rostrum. First antenna with 8 articles, article 1 without bristles, article 2 with 1 dorsal bristle. Endopod of adult male 2nd antenna without clasper. Sixth limb with lobe-like exopod bearing 4 bristles. Bellonci Organ bifid. Copulatory limb of male with 2 processes.
 Composition. At present this subfamily includes only the genus Deeveya Kornicker & Iliffe 1985. The great differences in the morphology of the carapaces of species of Spelaeoecia and Deeveya are deemed sufficient evidence to require that each genus be referred to a different subfamily
description: Published as part of Kornicker, Louis S., Iliffe, Thomas M. & Harrison-Nelson, Elizabeth, 2007, Ostracoda (Myodocopa) from Anchialine Caves and Ocean Blue Holes, pp. 1-151 in Zootaxa 1565 (1) on page 51, DOI: 10.11646/zootaxa.1565.1.1, http://zenodo.org/record/5095810
Additional file 2 of Movement behaviour of two social urticating caterpillars in opposite hemispheres
Creators: name: Uemura, Mizuki
name: Perkins, Lynda
name: Zalucki, Myron
name: Battisti, Andrea
Publisher: name: figshare
Year: 2020
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2 Image PDF The University of Queensland, Gatton campus, Australia, the fieldsite where Ochrogaster lunifer pre-pupation processions were studied. Pre-pupation processions were followed from ten Acacia spp. host trees that are represented as different coloured hexagons. Processions were followed until the larvae went into a bivouac which are represented as circles (colour coordinated with the host tree). Human attended areas are shaded in white and are not suitable for bivouac/pupation sites because it is made of concrete; with the exception of some areas that had leaf litter.
An Algorithm for Optimal Partitioning of Data on an Interval
Creators: name: Jackson, Brad
name: Scargle, Jeffrey D.
name: Barnes, David
name: Arabhi, Sundararajan
name: Alt, Alina
name: Gioumousis, Peter
name: Gwin, Elyus
name: Sangtrakulcharoen, Paungkaew
name: Tan, Linda
name: Tsai, Tun Tao
Publisher: name: arXiv
Year: 2003
Subjects: subject: Numerical Analysis (math.NA)
subject: Astrophysics (astro-ph)
subject: Computational Engineering, Finance, and Science (cs.CE)
subject: Data Structures and Algorithms (cs.DS)
subject: Information Theory (cs.IT)
subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences
subject: 65C60

description: Many signal processing problems can be solved by maximizing the fitness of a segmented model over all possible partitions of the data interval. This letter describes a simple but powerful algorithm that searches the exponentially large space of partitions of $N$ data points in time $O(N^2)$. The algorithm is guaranteed to find the exact global optimum, automatically determines the model order (the number of segments), has a convenient real-time mode, can be extended to higher dimensional data spaces, and solves a surprising variety of problems in signal detection and characterization, density estimation, cluster analysis and classification.
description: 3 pages, 1 figure, submitted to IEEE Signal Processing Letters, revised version with added references
Deeveya spiralis Kornicker & Iliffe 1985
Creators: name: Kornicker, Louis S.
name: Iliffe, Thomas M.
name: Harrison-Nelson, Elizabeth
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Ostracoda
Halocyprida
Thaumatocyprididae
Deeveya
Deeveya spiralis

description: Deeveya spiralis Kornicker & Iliffe 1985
 Deeveya spiralis Kornicker & Iliffe 1985: 477, figs. 1–12.— Kornicker & Palmer 1987: 619, fig. 6.— Kornicker et al. 1990: 37, figs. 22a, 23a–c, 29a, 30.
 Holotype. USNM 193117, adult female on slides and in alcohol. (Kornicker & Palmer 1987: 619 incorrectly reinterpreted the holotype and paratype to be A- 1 females.)
 Type locality. The Hole, Providenciales Island, Caicos Islands, Turks and Caicos Islands.
 Material. Slide of appendages of holotype, USNM 193117.
 Distribution. Known only from the type locality.
 Supplementary description of adult female. Fifth limb: 1st endopod segment with 4 ventral and 1 dorsal bristles. (This is consistent with the illustration of the limb by Kornicker & Iliffe (1985: fig. 11a), but their description (p. 490) listed only 4 bristles (3 ventral, 1 dorsal), which is incorrect).
description: Published as part of Kornicker, Louis S., Iliffe, Thomas M. & Harrison-Nelson, Elizabeth, 2007, Ostracoda (Myodocopa) from Anchialine Caves and Ocean Blue Holes, pp. 1-151 in Zootaxa 1565 (1) on page 56, DOI: 10.11646/zootaxa.1565.1.1, http://zenodo.org/record/5095810
Synthetic Semimetals with van der Waals Interfaces
Creators: name: Reddy, Bojja Aditya
name: Ponomarev, Evgeniy
name: Gutiérrez-Lezama, Ignacio
name: Ubrig, Nicolas
name: Barreteau, Céline
name: Giannini, Enrico
name: Morpurgo, Alberto F.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The assembly of suitably designed van der Waals (vdW) heterostructures represents a new approach to produce artificial systems with engineered electronic properties. Here, we apply this strategy to realize synthetic semimetals based on vdW interfaces formed by two different semiconductors. Guided by existing ab-initio calculations, we select WSe$_2$ and SnSe$_2$ mono and multilayers to assemble vdW interfaces, and demonstrate the occurrence of semimetallicity by means of different transport experiments. Semimetallicity manifests itself in a finite minimum conductance upon sweeping the gate over a large range in ionic liquid gated devices, which also offer spectroscopic capabilities enabling the quantitative determination of the band overlap. The semimetallic state is additionally revealed in Hall effect measurements by the coexistence of electrons and holes, observed by either looking at the evolution of the Hall slope with sweeping the gate voltage or with lowering temperature. Finally, semimetallicity results in the low-temperature metallic conductivity of interfaces of two materials that are themselves insulating. These results demonstrate the possibility to implement a state of matter that had not yet been realized in vdW interfaces, and represent a first step towards using these interfaces to engineer topological or excitonic insulating states.