cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
title: XML to WSML adapter Implementation
Creators: name: Kilgarriff, Edward
name: Sapkota, Brahmananda
name: Vasiliu, Laurentiu
name: Aiken, David
Publisher: name: University of Galway
Year: 2005
Subjects: subject: Web services
subject: XML (Document markup language)
subject: UML (Computer science)
subject: Computational linguistics

description: This paper describes an implementation of an Adapter that converts XML to a Web Service Modeling Language (WSML) . WSML is the language used to describe Web Service Modeling Ontology (WSMO) concepts, related to Semantic Web services (SWS). SWS are web services that are semantically annotated. The semantic annotation is necessary to address various business logics in an appropriate manner, thus allowing complex business applications to be built and executed. The Web Service Execution Environment (WSMX) is an execution environment for dynamic discovery, selection, mediation and invocation of semantic web services. WSMX is a reference implementation for WSMO.
HPLC analysis of digoxin and digitoxin : development of methods for dosage form assay and separation of potential impurities and metabolites
Creators: name: Desta, Belachew
Publisher: name: University of British Columbia
Year: 2010

description: The objective of this investigation was to develop quantitative isocratic HPLC methods for the analysis of digoxin and digitoxin. An HPLC system that employs a reverse-phase column, UV detection at 220 nm and solvent systems consisting of various proportions of water, methanol, isopropanol and dichlormethane was developed for the separation of digoxin, digitoxin and their potential degradation products and metabolites. HPLC separations of the above compounds by isocratic, solvent switchover and gradient elution modes were carried out in chromatographic times of 27, 16 and 13 minutes, respectively. For purposes of monitoring the separation of dihydro metabolites of digoxin, a 100% fluid recovery system was developed for use in the HPLC analysis of digoxin and its metabolites after fluorogenic post-column derivatization using the air-segmentation process. As an evidence of selectivity, the isocratic HPLC systems were utilized for the separation of a mixture of ten closely related steroids and the isolation of digitoxin from Digitalis purpurea leaf. The isocratic HPLC systems were found to be applicable for the quantitative analysis of digoxin and digitoxin in their respective dosage forms. The HPLC assay of digoxin and digitoxin dosage forms was carried out in less than forty-five minutes. These methods were found to be precise, accurate, sensitive enough for single tablet assay, and capable of simultaneously monitoring the potential degradation products or metabolites of digoxin and digitoxin. A comparison of the assay of digoxin and digitoxin dosage forms by HPLC and USP methods indicated that: (a) the precision and accuracy of both methods were comparable and within acceptable limits; (2) analysis by HPLC can be completed in less than forty-five minutes whereas the USP methods require over four hours; and (3) the HPLC methods have the advantages of higher sensitivity, selectivity and simplicity over the USP methods. The HPLC methods were used for the stability study of digoxin and digitoxin in their respective dosage forms. Lanoxin and digitoxin tablets were found to be stable under all the conditions of storage used in this study. Natigoxin tablets, Lanoxin injection and elixir were found to be subject to varying degrees and patterns of degradation. On the basis of the stability results it was observed that the assortment of pathways that may be involved at different conditions and times of storage'would make it difficult to estimate digoxin shelf-life from data obtained by accelerated aging. From the results of this investigation, it was concluded that the isocratic HPLC methods were suitable for the assay of digoxin and digitoxin dosage forms as well as for purposes of stability testing and simultaneous monitoring of degradation products or metabolites. This abstract represents the true contents of the thesis submitted.
Additional file 4 of Comprehensive analysis of allergen-specific IgE in COPD: mite-specific IgE specifically related to the diagnosis of asthma-COPD overlap
Creators: name: Toyota, Hikaru
name: Sugimoto, Naoya
name: Konomi Kobayashi
name: Suzuki, Yuki
name: Takeshita, Yuri
name: Ito, Ayaka
name: Ujino, Mariko
name: Fuminori Tomyo
name: Sakasegawa, Hirokazu
name: Koizumi, Yuta
name: Kuramochi, Michio
name: Yamaguchi, Masao
name: Nagase, Hiroyuki
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer

description: Additional file 4 Proportion of patients fulfilling the criteria for features of asthma
Leave-one-out Unfairness
Creators: name: Black, Emily
name: Fredrikson, Matt
Publisher: name: arXiv
Year: 2021
Subjects: subject: Machine Learning (cs.LG)
subject: Computers and Society (cs.CY)
subject: FOS: Computer and information sciences
subject: I.2.0; K.4.0

description: We introduce leave-one-out unfairness, which characterizes how likely a model's prediction for an individual will change due to the inclusion or removal of a single other person in the model's training data. Leave-one-out unfairness appeals to the idea that fair decisions are not arbitrary: they should not be based on the chance event of any one person's inclusion in the training data. Leave-one-out unfairness is closely related to algorithmic stability, but it focuses on the consistency of an individual point's prediction outcome over unit changes to the training data, rather than the error of the model in aggregate. Beyond formalizing leave-one-out unfairness, we characterize the extent to which deep models behave leave-one-out unfairly on real data, including in cases where the generalization error is small. Further, we demonstrate that adversarial training and randomized smoothing techniques have opposite effects on leave-one-out fairness, which sheds light on the relationships between robustness, memorization, individual fairness, and leave-one-out fairness in deep models. Finally, we discuss salient practical applications that may be negatively affected by leave-one-out unfairness.
description: FAccT '21
Polarization transfer in elastic Rayleigh scattering
Creators: name: Surzhykov, A.
name: Yerokhin, V. A.
name: Jahrsetz, T.
name: Stöhlker, T.
name: Fritzsche, S.
Publisher: name: GSI Helmholtzzentrum fuer Schwerionenforschung, Darmstadt
Year: 2014
Subjects: Physics

description: GSI Scientific Report 2013 - GSI Report 2014-1
SU(N) gauge theories in the presence of a topological term
Creators: name: Del Debbio, Luigi
name: Panagopoulos, Haralambos
name: Vicari, Ettore
Publisher: name: arXiv
Year: 2007
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: We review recent results on the theta dependence of the ground-state energy and spectrum of four-dimensional SU(N) gauge theories, where theta is the coefficient of the CP-violating topological term F-Fdual in the Lagrangian. In particular, we discuss the results obtained by Monte Carlo simulations of the lattice formulation of QCD, which allow the investigation of theta dependence around theta=0 by determining the moments of the topological charge distribution, and their correlations with other observables. The results for N=3 and larger values of N support the scenario obtained by general large-N scaling arguments.
description: 18 pages, presentation at the HEP2007 Conference, Manchester, 7/2007. A couple of references added
Additional file 5 of Comprehensive analysis of allergen-specific IgE in COPD: mite-specific IgE specifically related to the diagnosis of asthma-COPD overlap
Creators: name: Toyota, Hikaru
name: Sugimoto, Naoya
name: Konomi Kobayashi
name: Suzuki, Yuki
name: Takeshita, Yuri
name: Ito, Ayaka
name: Ujino, Mariko
name: Fuminori Tomyo
name: Sakasegawa, Hirokazu
name: Koizumi, Yuta
name: Kuramochi, Michio
name: Yamaguchi, Masao
name: Nagase, Hiroyuki
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer

description: Additional file 5 Relationships between blood eosinophil count, total IgE level, and FeNO
Monad Bundles in Heterotic String Compactifications
Creators: name: Anderson, Lara B.
name: He, Yang-Hui
name: Lukas, Andre
Publisher: name: arXiv
Year: 2008
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In this paper, we study positive monad vector bundles on complete intersection Calabi-Yau manifolds in the context of E8 x E8 heterotic string compactifications. We show that the class of such bundles, subject to the heterotic anomaly condition, is finite and consists of about 7000 models. We explain how to compute the complete particle spectrum for these models. In particular, we prove the absence of vector-like family anti-family pairs in all cases. We also verify a set of highly non-trivial necessary conditions for the stability of the bundles. A full stability proof will appear in a companion paper. A scan over all models shows that even a few rudimentary physical constraints reduces the number of viable models drastically.
description: 35 pages, 4 figures
Some necessary and sufficient conditions for parastrophic invariance of the associative law in quasigroups
Creators: name: Jaiyeola, Temitope Gbolahan
Publisher: name: arXiv
Year: 2007
Subjects: subject: General Mathematics (math.GM)
subject: FOS: Mathematics
subject: 20NO5 (Primary), 08A05 (Secondary)

description: Every quasigroup $(S,\cdot)$ belongs to a set of 6 quasigroups, called parastrophes denoted by $(S,π_i)$, $i\in \{1,2,3,4,5,6\}$. It is shown that isotopy-isomorphy is a necessary and sufficient condition for any two distinct quasigroups $(S,π_i)$ and $(S,π_j)$, $i,j\in \{1,2,3,4,5,6\}$ to be parastrophic invariant relative to the associative law. In addition, a necessary and sufficient condition for any two distinct quasigroups $(S,π_i)$ and $(S,π_j)$, $i,j\in \{1,2,3,4,5,6\}$ to be parastrophic invariance under the associative law is either if the $π_i$-parastrophe of $H$ is equivalent to the $π_i$-parastrophe of the holomorph of the $π_i$-parastrophe of $S$ or if the $π_i$-parastrophe of $H$ is equivalent to the $π_k$-parastrophe of the $π_i$-parastrophe of the holomorph of the $π_i$-parastrophe of $S$, for a particular $k\in \{1,2,3,4,5,6\}$.
description: 11 pages
Additional file 1 of First insights into the archaeometric analysis of the Los Amores Mosaic in Cástulo (Linares, Spain): the Judgement of Paris
Creators: name: Sánchez, Alberto
name: Tuñón, José
name: Montejo, Manuel
name: Amate, Pilar
name: Ceprián, Bautista
name: Rousaki, Anastasia
name: Costa, Mafalda
name: Saelens, Delphine
name: Lycke, Sylvia
name: Vandenabeele, Peter
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Additional file 1: Figure S1. a Location of Cástulo (Linares, Spain). b Virtual reconstruction of Cástulo city at Roman times. c Building D with Los Amores Mosaic. Figure S2. Los Amores mosaic in Cástulo (Linares, Spain). Figure S3. Areas 1, 2, 3 and 4 of Judgement of Paris in Los Amores mosaic. Figure S4. In situ analysed tesserae of Judgement of Paris in Los Amores mosaic (Area 1). Figure S5. In situ analysed tesserae of Judgement of Paris in Los Amores mosaic (Area 2). Figure S6. In situ analysed tesserae of Judgement of Paris in Los Amores mosaic (Area 3). Figure S7. In situ analysed tesserae of Judgement of Paris in Los Amores mosaic (Area 4).
Additional file 2 of Comprehensive analysis of allergen-specific IgE in COPD: mite-specific IgE specifically related to the diagnosis of asthma-COPD overlap
Creators: name: Toyota, Hikaru
name: Sugimoto, Naoya
name: Konomi Kobayashi
name: Suzuki, Yuki
name: Takeshita, Yuri
name: Ito, Ayaka
name: Ujino, Mariko
name: Fuminori Tomyo
name: Sakasegawa, Hirokazu
name: Koizumi, Yuta
name: Kuramochi, Michio
name: Yamaguchi, Masao
name: Nagase, Hiroyuki
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer

description: Additional file 2 The number of patients analyzed in the study
False vacuum decay in quantum spin chains
Creators: name: Lagnese, Gianluca
name: Surace, Federica Maria
name: Kormos, Márton
name: Calabrese, Pasquale
Publisher: name: arXiv
Year: 2021
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: High Energy Physics - Theory (hep-th)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The false vacuum decay has been a central theme in physics for half a century with applications to cosmology and to the theory of fundamental interactions. This fascinating phenomenon is even more intriguing when combined with the confinement of elementary particles. Due to the astronomical time scales involved, the research has so far focused on theoretical aspects of this decay. The purpose of this Letter is to show that the false vacuum decay is accessible to current optical experiments as quantum analog simulators of spin chains with confinement of the elementary excitations, which mimic the high energy phenomenology but in one spatial dimension. We study the non-equilibrium dynamics of the false vacuum in a quantum Ising chain and in an XXZ ladder. The false vacuum is the metastable state that arises in the ferromagnetic phase of the model when the symmetry is explicitly broken by a longitudinal field. This state decays through the formation of "bubbles" of true vacuum. Using iTEBD simulations, we are able to study the real-time evolution in the thermodynamic limit and measure the decay rate of local observables. We find that the numerical results agree with the theoretical prediction that the decay rate is exponentially small in the inverse of the longitudinal field.
description: 7 pages, 4 figures
Finite time decoherence could be suppressed efficiently in photonic crystal
Creators: name: Wang, Fa-Qiang
name: Zhang, Zhi-Ming
name: Liang, Rui-Sheng
Publisher: name: arXiv
Year: 2008
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The decoherence of two initially entangled qubits in anisotropic band gap photonic crystal has been studied analytically without Born or Markovian approximation. It is shown that the decoherence dynamics of two qubits in photonic crystal is greatly different from that of two qubits in vacuum or subjected to usual non-Markovian reservoir. The results also show that the finite time decoherence invoked by spontaneous emission could be suppressed efficiently and the entanglement of the Bell state possesses odd parity is more easily preserved in photonic crystal than that of the Bell state possesses even parity under the same condition. A store scheme for entangled particle pair is proposed.
description: 4 pages, 7 figures
Additional file 1 of First insights into the archaeometric analysis of the Los Amores Mosaic in Cástulo (Linares, Spain): the Judgement of Paris
Creators: name: Sánchez, Alberto
name: Tuñón, José
name: Montejo, Manuel
name: Amate, Pilar
name: Ceprián, Bautista
name: Anatasia Rousaki
name: Costa, Mafalda
name: Saelens, Delphine
name: Lycke, Sylvia
name: Vandenabeele, Peter
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Additional file 1: Figure S1. a Location of Cástulo (Linares, Spain). b Virtual reconstruction of Cástulo city at Roman times. c Building D with Los Amores Mosaic. Figure S2. Los Amores mosaic in Cástulo (Linares, Spain). Figure S3. Areas 1, 2, 3 and 4 of Judgement of Paris in Los Amores mosaic. Figure S4. In situ analysed tesserae of Judgement of Paris in Los Amores mosaic (Area 1). Figure S5. In situ analysed tesserae of Judgement of Paris in Los Amores mosaic (Area 2). Figure S6. In situ analysed tesserae of Judgement of Paris in Los Amores mosaic (Area 3). Figure S7. In situ analysed tesserae of Judgement of Paris in Los Amores mosaic (Area 4).
Development of a correlation between rotary drill performance and controlled blasting powder factors
Creators: name: Leighton, John Charles
Publisher: name: University of British Columbia
Year: 2010

description: Despite the availability of established, sophisticated methods for planning and designing stable slopes in rock, comparatively little attention is usually paid to the problems of carrying out the excavation. Blasting should be carefully planned to obtain optimum fragmentation as well as steep, stable pit walls for a minimum stripping ratio. The principal difficulty facing a blast designer is the lack of prior information about the many critical blasting characteristics of the rock mass. The common practice of trial-and-error blasting will eventually lead to a suitable design, but this must be repeated time after time in variable geology. This frequently results in many blast damaged slopes with decreased stability and increased safety hazards. For this research project, an extensive study was undertaken to develop a concise background knowledge on state-of-the-art blasting technology. A field research program at Afton Mine examined the relationship between characteristic rock mass features and blast performance for application in optimal blasting design. Due to the complex inter-relationships of the many rock mass properties, the development of a comprehensive rock blasting model is not feasible. A practical approach to the problem was achieved by classifying each rock type with a single Rock Quality Index value which can be obtained from monitoring the performance of a rotary blasthole drill. A series of controlled blasting tests revealed a strong correlation between the Rock Quality Index and Powder Factor values over a broad range of geological conditions. The correlation was found to be sufficiently reliable to enable the prediction of optimum Powder Factors for perimeter blasts in previously untested rock types. This Rock Quality Index and Powder Factor correlation provides a practical approach to solving the problems of site specific blasting design. Without the costs of additional equipment or specially trained personnel, the drilling can provide a continual supply of data, reflecting changes in the rock mass and permitting the selection of an economical Powder Factor. The ultimate goals of this simple correlation system are optimization of fragmentation, elimination of unacceptable blast damage, preservation of inherent rock strength, and maximization of slope stability.
Stellar Gravitational Lens Engineering for Interstellar Communication and Artifact SETI
Creators: name: Kerby, Stephen
name: Wright, Jason T.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Popular Physics (physics.pop-ph)
subject: FOS: Physical sciences

description: Several recent works have proposed "stellar relay" transmission systems in which a spacecraft at the focus of a star's gravitational lens achieves dramatic boosts in the gain of an outgoing or incoming interstellar transmission. We examine some of the engineering requirements of a stellar relay system, evaluate the long-term sustainability of a gravitational relay, and describe the perturbations and drifts that must be actively countered to maintain a relay-star-target alignment. The major perturbations on a relay-Sun-target alignment are the inwards gravity of the Sun and the reflex motion of the Sun imparted by the planets. These approx. m/s/yr accelerations can be countered with modern propulsion systems over century-long timescales. This examination is also relevant for telescope designs aiming to use the Sun as a focusing element. We additionally examine prospects for an artifact SETI search to observe stellar relays placed around the Sun by an extraterrestrial intelligence and suggest certain nearby stars that are relatively unperturbed by planetary systems as favorable nodes for a stellar relay communications system.
description: 13 pages, 1 figure, 2 tables; updated with proofing edits
Three-dimensional N=6 SCFT's and their membrane dynamics
Creators: name: Berenstein, David
name: Trancanelli, Diego
Publisher: name: arXiv
Year: 2008
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We analyze several aspects of the recent construction of three-dimensional conformal gauge theories by Aharony et al. in various regimes. We pay special attention to understanding how the M-theory geometry and interpretation can be extracted from the analysis of the field theory. We revisit the calculations of the moduli space of vacua and the complete characterization of chiral ring operators by analyzing the field theory compactified on a 2-sphere. We show that many of the states dual to these operators can be interpreted as D-brane states in the weak coupling limit. Also, various features of the dual AdS geometry can be obtained by performing a strong coupling expansion around moduli space configurations, even though one is not taking the planar expansion. In particular, we show that at strong coupling the corresponding weak coupling D-brane states of the chiral ring localize on particular submanifolds of the dual geometry that match the M-theory interpretation. We also study the massive spectrum of fields in the moduli space. We use this to investigate the dispersion relation of giant magnons from the field theory point of view. Our analysis predicts the exact functional form of the dispersion relation as a function of the world-sheet momentum, independently of integrability assumptions, but not the exact form with respect to the 't Hooft coupling. We also get the dispersion relation of bound states of giant magnons from first principles, providing evidence for the full integrability of the corresponding spin chain model at strong 't Hooft coupling.
description: 64 pages, 5 figures; v2: added references
HI 21 cm observation and mass models of the extremely thin galaxy FGC 1440
Creators: name: Aditya, K.
name: Kamphuis, Peter
name: Banerjee, Arunima
name: Borisov, Sviatoslav
name: Mosenkov, Aleksandr
name: Antipova, Aleksandra
name: Makarov, Dmitry
Publisher: name: arXiv
Year: 2021
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We present observations and models of the kinematics and distribution of neutral hydrogen (HI) in the superthin galaxy FGC 1440 with an optical axial ratio $a/b = 20.4$. Using the Giant Meterwave Radio telescope (GMRT), we imaged the galaxy with a spectral resolution of 1.7 $\rm kms^{-1}$ and a spatial resolution of $15" \times 13.5"$. We find that FGC 1440 has an asymptotic rotational velocity of 141.8 $\rm kms^{-1}$ . The structure of the HI disc in FGC 1440 is that of a typical thin disc warped along the line of sight, but we can not rule out the presence of a central thick HI disc. We find that the dark matter halo in FGC 1440 could be modeled by a pseudo-isothermal (PIS) profile with $\rm R_{c}/ R_{d} <2$, where $R_{c}$ is the core radius of the PIS halo and $R_{d}$ the exponential stellar disc scale length. We note that in spite of the unusually large axial ratio of FGC 1440, the ratio of the rotational velocity to stellar vertical velocity dispersion, $\frac{V_{Rot}}{σ_{z}} \sim 5 - 8$, which is comparable to other superthins. Interestingly, unlike previously studied superthin galaxies which are outliers in the $log_{10}(j_{*}) - log_{10}(M_{*})$ relation for ordinary bulgeless disc galaxies, FGC 1440 is found to comply with the same. The values of $j$ for the stars, gas and the baryons in FGC 1440 are consistent with those of normal spiral galaxies with similar mass.
description: Accepted for publication in MNRAS
Weak Inverse Property Loops and Some Isotopy-Isomorphy Properties
Creators: name: Jaiyeola, Temitope Gbolahan
name: Adeniran, John Olushola
Publisher: name: arXiv
Year: 2007
Subjects: subject: Group Theory (math.GR)
subject: FOS: Mathematics
subject: 20NO5 ; Secondary 08A05

description: Two distinct isotopy-isomorphy conditions, different from those of J. M. Osborn and Wilson's condition, for a weak inverse property loop(WIPL) are shown. Only one of them characterizes isotopy-isomorphy in WIPLs while the other is just a sufficient condition for isotopy-isomorphy. Under the sufficient condition called the ${\cal T}$ condition, Artzy's result that isotopic cross inverse property loops(CIPL) are isomorphic is proved for WIP loops.
description: 8 pages, submitted for publication
Additional file 3 of Association of maximal stress ergometry performance with troponin T and abdominal aortic calcification score in advanced chronic kidney disease
Creators: name: Lankinen, Roosa
name: Hakamäki, Markus
name: Metsärinne, Kaj
name: Koivuviita, Niina
name: Pärkkä, Jussi P.
name: Saarenhovi, Maria
name: Hellman, Tapio
name: Järvisalo, Mikko J.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Marine Biology

description: Additional file 3: Supplemental Table 1. Comparison between patients included in the study and patients excluded due to missing stress ergometry data.
Non-Gaussian continuous-variable teleportation
Creators: name: Marian, Paulina
name: Marian, Tudor A.
Publisher: name: arXiv
Year: 2008
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We have recently shown that the output field in the Braunstein-Kimble protocol of teleportation is a superposition of two fields: the input one and a field created by Alice's measurement and by displacement of the state at Bob's station by using the classical information provided by Alice. We study here the noise added by teleportation and compare its influence in the Gaussian and non-Gaussian settings.
description: Contributed to Workshop "Noise, Information and Complexity @ Quantum Scale", Erice, Italy (2007)
The Most Dark Matter Dominated Galaxies: Predicted Gamma-ray Signals from the Faintest Milky Way Dwarfs
Creators: name: Strigari, Louis E.
name: Koushiappas, Savvas M.
name: Bullock, James S.
name: Kaplinghat, Manoj
name: Simon, Joshua D.
name: Geha, Marla
name: Willman, Beth
Publisher: name: arXiv
Year: 2007
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We use kinematic data from three new, nearby, extremely low-luminosity Milky Way dwarf galaxies (Ursa Major II, Willman 1, and Coma Berenices) to constrain the properties of their dark matter halos, and from these make predictions for the gamma-ray flux from annihilation of dark matter particles in these halos. We show that these 10^3 solar luminosity dwarfs are the most dark matter dominated galaxies in the Universe, with total masses within 100 pc in excess of 10^6 solar masses. Coupled with their relative proximity, their large masses imply that they should have mean gamma-ray fluxes comparable to or greater than any other known satellite galaxy of the Milky Way. Our results are robust to both variations of the inner slope of the density profile and the effect of tidal interactions. The fluxes could be boosted by up to two orders of magnitude if we include the density enhancements caused by surviving dark matter substructure.
description: 9 pages, 4 figures. Minor typos corrected
Additional file 1 of Factors associated with participation in an ongoing national catch-up campaign against rubella: a cross-sectional internet survey among 1680 adult men in Japan
Creators: name: Hori, Ai
name: Yoshii, Shiho
name: Isaka, Yukari
name: Wada, Koji
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Neuroscience
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1. The research questionnaire translated in English (Original version is in Japanese). The original questionnaire in Japanese was developed for this study.
3D fluorescence microscopy data synthesis for segmentation and benchmarking
Creators: name: Eschweiler, Dennis
name: Rethwisch, Malte
name: Jarchow, Mareike
name: Koppers, Simon
name: Stegmaier, Johannes
Publisher: name: arXiv
Year: 2021
Subjects: subject: Image and Video Processing (eess.IV)
subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Computer and information sciences

description: Automated image processing approaches are indispensable for many biomedical experiments and help to cope with the increasing amount of microscopy image data in a fast and reproducible way. Especially state-of-the-art deep learning-based approaches most often require large amounts of annotated training data to produce accurate and generalist outputs, but they are often compromised by the general lack of those annotated data sets. In this work, we propose how conditional generative adversarial networks can be utilized to generate realistic image data for 3D fluorescence microscopy from annotation masks of 3D cellular structures. In combination with mask simulation approaches, we demonstrate the generation of fully-annotated 3D microscopy data sets that we make publicly available for training or benchmarking. An additional positional conditioning of the cellular structures enables the reconstruction of position-dependent intensity characteristics and allows to generate image data of different quality levels. A patch-wise working principle and a subsequent full-size reassemble strategy is used to generate image data of arbitrary size and different organisms. We present this as a proof-of-concept for the automated generation of fully-annotated training data sets requiring only a minimum of manual interaction to alleviate the need of manual annotations.
Are galaxies extending?
Creators: name: Lee, Jae-Weon
Publisher: name: arXiv
Year: 2008
Subjects: subject: Astrophysics (astro-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: It is suggested that the recently observed size evolution of very massive compact galaxies in the early universe can be explained, if dark matter is in Bose Einstein condensate. In this model the size of the dark matter halos and galaxies depends on the correlation length of dark matter and, hence, on the the expansion of the universe. This theory predicts that the size of the galaxies increases as the Hubble radius of the universe even without merging, which agrees well with the recent observational data.
description: 5 pages, 2figs, revtex,accepted version for PLB
Finite-size effects in roughness distribution scaling
Creators: name: Oliveira, T. J.
name: Reis, F. D. A. Aarao
Publisher: name: arXiv
Year: 2007
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We study numerically finite-size corrections in scaling relations for roughness distributions of various interface growth models. The most common relation, which considers the average roughness $$ as scaling factor, is not obeyed in the steady states of a group of ballistic-like models in 2+1 dimensions, even when very large system sizes are considered. On the other hand, good collapse of the same data is obtained with a scaling relation that involves the root mean square fluctuation of the roughness, which can be explained by finite-size effects on second moments of the scaling functions. We also obtain data collapse with an alternative scaling relation that accounts for the effect of the intrinsic width, which is a constant correction term previously proposed for the scaling of $$. This illustrates how finite-size corrections can be obtained from roughness distributions scaling. However, we discard the usual interpretation that the intrinsic width is a consequence of high surface steps by analyzing data of restricted solid-on-solid models with various maximal height differences between neighboring columns. We also observe that large finite-size corrections in the roughness distributions are usually accompanied by huge corrections in height distributions and average local slopes, as well as in estimates of scaling exponents. The molecular-beam epitaxy model of Das Sarma and Tamborenea in 1+1 dimensions is a case example in which none of the proposed scaling relations works properly, while the other measured quantities do not converge to the expected asymptotic values. Thus, although roughness distributions are clearly better than other quantities to determine the universality class of a growing system, it is not the final solution for this task.
description: 25 pages, including 9 figures and 1 table
Additional file 1 of Enhanced cell survival and therapeutic benefits of IL-10-expressing multipotent mesenchymal stromal cells for muscular dystrophy
Creators: name: Nitahara-Kasahara, Yuko
name: Mutsuki Kuraoka
name: Oda, Yuki
name: Hayashita-Kinoh, Hiromi
name: Shin’ichi Takeda
name: Okada, Takashi
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Physiology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer

description: Additional file 1: Figure S1. In vivo bioluminescence imaging for the detection of injected MSCs. Figure S2. Enhanced engraftment of IL-10-MSCs. Figure S3. MSC survival in skeletal muscle tissue. Figure S4. IL-10 expression in IL-10-MSC-treated muscle tissue. Figure S5. Characterization of gene-transduced MSCs. Figure S6. Serum chemistry data from the hDPSC-treated CXMDJ model. Figure S7. Reverse transcription PCR for evaluating human specific dystrophin expression. Figure S8. Estimated isometric tetanic force in hDPSC-treated CXMDJ. Figure S9. 15-m running speed of hDPSC-treated CXMDJ. Table S1. Running speed (15-m) of dogs aged 12 to 44 months
title: A hybrid method for rating prediction using linked data features and text reviews
Creators: name: Yumusak, Semih
name: Muñoz, Emir
name: Minervini, Pasquale
name: Dogdu, Erdogan
name: Kodaz, Halife
Publisher: name: CEUR-WS.org
Year: 2016
Subjects: subject: Data analytics
subject: Linked data
subject: SPARQL
subject: Classification
subject: Machine learning
subject: #Know@LOD2016

description: This paper describes our entry for the Linked Data Mining Challenge 2016, which poses the problem of classifying music albums as good or bad by mining Linked Data. The original labels are assigned according to aggregated critic scores published by the Metacritic s website. To this end, the challenge provides datasets that contain the DBpedia reference for music albums. Our approach benefits from Linked Data (LD) and free text to extract meaningful features that help to separate these two classes of music albums. Thus, our features can be summarized as follows: (1) direct object LD features, (2) aggregated count LD features, and (3) textual review features. We filtered out those properties somehow related with scores and Metacritic to build unbiased models. By using these sets of features, we trained seven models using 10-fold cross validation to estimate performance. We reached the best average accuracy of 87.81% in the training data using a Linear SVM model and all our features, while we reached 90% in the testing data.
Competition between attractive and repulsive interactions in two-component Bose-Einstein condensates trapped in an optical lattice
Creators: name: Matuszewski, Michal
name: Malomed, Boris A.
name: Trippenbach, Marek
Publisher: name: arXiv
Year: 2007
Subjects: subject: Other Condensed Matter (cond-mat.other)
subject: FOS: Physical sciences

description: We consider effects of inter-species attraction on two-component gap solitons (GSs) in the binary BEC with intra-species repulsion, trapped in the one-dimensional optical lattice (OL). Systematic simulations of the coupled Gross-Pitaevskii equations (GPEs) corroborate an assumption that, because the effective mass of GSs is negative, the inter-species attraction may \emph{split} the two-component soliton. Two critical values, $κ_{1} $ and $κ_{2}$, of the OL strength ($κ$) are identified. Two-species GSs with fully overlapping wave functions are stable in strong lattices ($κ>κ_{1}$). In an intermediate region, $κ_{1}>κ>κ_{2}$, the soliton splits into a double-humped state with separated components. Finally, in weak lattices ($κ
ELIXIR-EXCELERATE D6.5: Improvement and Application of Eukaryotic Gene catalogue
Creators: name: Pelletier, Eric
name: Corre, Erwan
name: Niang, Guita
name: Meng, Arnaud
name: Hoebeke, Mark
name: Finn, Robert
Publisher: name: Zenodo
Year: 2019
Subjects: METdb
database
transcriptomes
CWL

description: A new resource, METdb, has been established to house the data produced from the outputs of the assembly and annotation workflow runs on 489 transcriptomes. This new resource dramatically increases the representation of micro-eukaryotic organisms, both in this new database, as well as being propagated to core data resources such as ENA and UniProtKB. METdb provides a unique collection of eukaryotic gene annotations, and is expected to become an important reference collection fro the interpretation of marine metagenomics datasets.

	For this deliverable, we developed two new pipelines for assembly and annotation of marine micro-eukaryotic transcriptomes. These have been converted to CWL (other work) leveraging many of the tool descriptions produced as part of DeliverableD6.3. Thereapplicationhighlightsthere-useofCWLtooldescriptions and the outputs of the Compute (WP4) and Interoperability platforms (WP5), and demonstrates how workflows can be used to make new data resources.

	A web interface has been developed to provide users access to the data contained within METdb, and importantly exposed data that have previously languished in undiscoverable laboratory websites, increasing discoverability of this data.

	While this represents an important new development, the marine micro-eukaryotic kingdom remains massively undersampled despite the sequence diversity. The annotations in METdb provide another resource for the discovery of novel enzymes of the biotechnology sector (as well as the new Microbial Biotechnology Community).
Oscillations In The Line-of-Sight Magnetic Field Strength In A Pore Observed By The GREGOR Infrared Spectrograph (GRIS)
Creators: name: Nelson, C. J.
name: Campbell, R. J.
name: Mathioudakis, M.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Numerous magnetohydrodynamic oscillations have been reported within solar pores over the past decades, including in line-of-sight (LOS) velocities, intensities, and magnetic field strengths. Our aim is to identify whether high-amplitude oscillations in the LOS magnetic field strength can be detected within a pore located in Active Region 12748 and to investigate which physical mechanisms could be responsible for them. A solar pore was observed on the 1st September 2019 using the GREGOR Infrared Spectrograph for around one hour. Full-Stokes vectors were sampled in a 37 A window containing the Fe I 15648.52 A line (effective Lande g-factor of 3). The LOS magnetic field strength is inferred using the strong-field approximation. The Stokes Inversion based on Response functions code is used to gain a more complete understanding the properties of the solar atmosphere at the locations of these oscillations. Oscillations of more than 100 G are observed in the LOS magnetic field in the period window 600-1272 s at three localised (>1"^2) regions. These oscillations have coherence across individual regions indicating that jitter cannot account for their occurrence. Longer-period amplitude variations, amplitudes over 200 G, are also detected but these have periods outside of the cone-of-influence. Numerical inversions confirm both oscillations in the LOS magnetic field strength at optical depths of around log-tau_5000=-0.5 (potentially caused by compression) and other effects (e.g., changes in the optical depth or the inclination of the field) may account for these changes. The oscillations in the separations of the Stokes-V lobes of the 15648.52 A line appear to be solar in nature. Future work will be required to understand whether these are truly oscillations in the magnetic field strength at a specific depth in the solar atmosphere or whether other effects are responsible for these signatures.
description: 11 pages, 8 figures, 2 tables, Accepted for A&A
Quantum phase transition in a far from equilibrium steady state of XY spin chain
Creators: name: Prosen, Tomaz
name: Pizorn, Iztok
Publisher: name: arXiv
Year: 2008
Subjects: subject: Quantum Physics (quant-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Using quantization in the Fock space of operators we compute the non-equilibrium steady state in an open Heisenberg XY spin 1/2 chain of finite but large size coupled to Markovian baths at its ends. Numerical and theoretical evidence is given for a far from equilibrium quantum phase transition with spontaneous emergence of long-range order in spin-spin correlation functions, characterized by a transition from saturation to linear growth with the size of the entanglement entropy in operator space.
description: 4 pages (in RevTex) with 5 figures - essentially identical with a published version
title: Browsing Linked Data with Fenfire
Creators: name: Hastrup, Tuukka
name: Cyganiak, Richard
name: Bojars, Uldis
Publisher: name: University of Galway
Year: 2008
Subjects: subject: Browsers (Computer programs)
subject: Open source software
subject: RDF (Document markup language)

description: A wealth of information has recently become available as browsable RDF data on the Web, but the selection of client applications to interact with this Linked Data remains limited. We show how to browse Linked Data with Fen¿re, a Free and Open Source Software RDF browser and editor that employs a graph view and focuses on an engaging and interactive browsing experience. This sets Fen¿re apart from previous table- and outline-based Linked Data browsers.
$h$-adic quantum vertex algebras in types $B$, $C$, $D$ and their $ϕ$-coordinated modules
Creators: name: Kožić, Slaven
Publisher: name: arXiv
Year: 2021
Subjects: subject: Quantum Algebra (math.QA)
subject: FOS: Mathematics
subject: 17B37, 17B69, 81R50

description: We introduce the $h$-adic quantum vertex algebras associated with the trigonometric $R$-matrices in types $B$, $C$ and $D$, thus generalizing the well-known Etingof-Kazhdan construction in type $A$. We show that restricted modules for quantum affine algebras in types $B$, $C$ and $D$ are naturally equipped with the structure of $ϕ$-coordinated module for the aforementioned $h$-adic quantum vertex algebras.
description: 22 pages, comments are welcome
Additional file 1 of Cocktail of carbohydrases from Aspergillus niger: an economical and eco-friendly option for biofilm clearance from biopolymer surfaces
Creators: name: Arashdeep Kaur
name: Soni, Sanjeev Kumar
name: Vij, Shania
name: Rishi, Praveen
Publisher: name: figshare
Year: 2021
Subjects: subject: Microbiology
subject: FOS: Biological sciences

description: Additional file 1: Figure S1. Contour plots representing yields of different enzymes from the surface culture of A. niger APS on wheat bran and kitchen waste-based medium as affected by corn steep liquor (CSL; %) and MgSO4 (%) keeping the other variables at 0 coded values. Figure S2. (a) Well diffusion assay on a skimmed milk agar plate for the assessment of protease activity in the enzyme cocktail along with the positive controls, A: chymotrypsin (1.0 mg/ml), B: trypsin (1.0 mg/ml), C: proteinase K (1.0 mg/ml), D: enzyme supernatant, E: neutralized enzyme supernatant; (b) Well diffusion assay on glycerol tributyrate plate for the assessment of lipase activity in the enzyme cocktail along with the positive control (commercial lipase) at different dilutions; A: 2.0 mg/ml, B: 1.0 mg/ml, C: 0.5 mg/ml, D: 0.25 mg/ml, E: 0.125 mg/ml, F: Enzyme supernatant from A. niger APS.
Non-linear theory for multiple M2 branes
Creators: name: Iengo, Roberto
name: Russo, Jorge G.
Publisher: name: arXiv
Year: 2008
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We present a manifestly SO(8) invariant non-linear Lagrangian for describing the non-abelian dynamics of the bosonic degrees of freedom of N coinciding M2 branes in flat spacetime. The theory exhibits a gauge symmetry structure of the BF type (semidirect product of SU(N) and translations) and at low energies it reduces exactly to the bosonic part of the Lorentzian Bagger-Lambert Lagrangian for group SU(N). There are eight scalar fields satisfying a free-scalar equation. When one of them takes a large expectation value, the non-linear Lagrangian gets simplified and the theory can be connected to the non-abelian Lagrangian describing the dynamics of N coinciding D2 branes. As an application, we show that the BPS fuzzy funnel solution describing M2 branes ending into a single M5 brane is an exact solution of the non-linear system.
description: 13 pages, latex. Correction and reference added
title: Annotation and Navigation in Semantic Wikis
Creators: name: Oren, Eyal
name: Delbru, Renaud
name: Möller, Knud
name: Handschuh, Siegfried
Publisher: name: University of Galway
Year: 2006
Subjects: subject: Wikis (Computer science)
subject: Information retrieval
subject: Semantic Web

description: Semantic Wikis allow users to semantically annotate their Wiki content. The particular annotations can differ in expressive power, simplicity, and meaning. We present an elaborate conceptual model for semantic annotations, introduce a unique and rich Wiki syntax for these annotations, and discuss how to best formally represent the augmented Wiki content. We improve existing navigation techniques to automatically construct faceted browsing for semistructured data. By utilising the Wiki annotations we provide greatly enhanced information retrieval. Further we report on our ongoing development of these techniques in our prototype SemperWiki.