cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Spectral and Modal Properties of a Mid-IR Spherical Microlaser
Creators: name: Behzadi, Behsan
name: Jain, Ravinder K.
name: Hossein-Zadeh, Mani
Publisher: name: arXiv
Year: 2017
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: Whispering gallery mode (WGM) lasers are well-known for their small sizes, low thresholds and narrow linewidths, and have been the subject of research and development for more than two decades. However most of the initial reports and studies have focused on near-IR and visible WGM microlasers. Recent advances in the synthesis, doping and processing of high quality mid-IR transparent glasses have provided the means to extend the wavelengths of these microlasers to the mid-IR range. In this paper, we present a detailed characterization of a compact and low-cost mid-IR spherical WGM microlaser based on heavily doped Er:ZBLAN glass operating near 2.7 um with an estimated linewidth less than 1.1 MHz. We describe experimental results on observed single-mode and multimode spectra, thermal tuning, and polarization characteristics of such microlasers. Using a simple analysis of spherical microresonator modes and including considerations of pump and laser mode overlap we provide guidelines for optimized microlaser design.
Additional file 1 of Transcriptome analysis reveals underlying immune response mechanism of fungal (Penicillium oxalicum) disease in Gastrodia elata Bl. f. glauca S. chow (Orchidaceae)
Creators: name: Wang, Yanhua
name: Gao, Yugang
name: Zang, Pu
name: Xu, Yue
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 1: Table S1. Sequencing and reads mapping.
Root plasticity under fluctuating soil moisture stress exhibited by backcross inbred line of a rice variety, Nipponbare carrying introgressed segments from KDML105 and detection of the associated QTLs
Creators: name: Owusu-Nketia, Stella
name: Inukai, Yoshiaki
name: Ohashi, Satomi
name: Suralta, Roel Rodriguez
name: Doi, Kazuyuki
name: Mitsuya, Shiro
name: Kano-Nakata, Mana
name: Niones, Jonathan Manito
name: Nguyen, Dinh Thi Ngoc
name: Kabuki Takuya
name: Daigo Makihara
name: Yamauchi, Akira
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology

description: In rainfed lowland rice ecosystem, rice plants are often exposed to alternating recurrences of waterlogging and drought due to erratic rainfall. Such soil moisture fluctuation (SMF) which is completely different from simple or progressive drought could be stressful for plant growth, thereby causing reduction in yield. Root plasticity is one of the key traits that play important roles for plant adaptation under such conditions. This study aimed to evaluate root plasticity expression and its functional roles in dry matter production and yield under SMF using Nipponbare, KDML 105 and three backcross inbred lines (BILs) and to identify QTL(s) associated with root traits in response to SMF at two growth stages using Nipponbare/KDML105 F2 plants. A BIL, G3-3 showed higher shoot dry matter production and yield than Nipponbare due to its greater ability to maintain stomatal conductance concomitant with greater root system development caused by promoted production of nodal and lateral roots under SMF. QTLs were identified for total nodal root length, total lateral root length, total root length, number of nodal roots, and branching index under SMF at vegetative and reproductive stages. The QTLs detected at vegetative and reproductive stages were different. We discuss here that relationship between root system of G3-3 and the detected QTLs. Therefore, G3-3 and the identified QTLs could be useful genetic materials in breeding program for improving the adaptation of rice plants in target rainfed lowland areas.
Imprints of non-standard Dark Energy and Dark Matter Models on the 21cm Intensity Map Power Spectrum
Creators: name: Carucci, Isabella P.
name: Corasaniti, Pier-Stefano
name: Viel, Matteo
Publisher: name: arXiv
Year: 2017
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We study the imprint of non-standard dark energy (DE) and dark matter (DM) models on the 21cm intensity map power spectra from high-redshift neutral hydrogen (HI) gas. To this purpose we use halo catalogs from N-body simulations of dynamical DE models and DM scenarios which are statistically indistinguishable from the standard Cold Dark Matter model with Cosmological Constant (LCDM) using currently available cosmological observations. We limit our analysis to halo catalogs at redshift z = 1 and 2.3 which are common to all simulations. For each catalog we model the HI distribution by using a simple prescription to associate the HI gas mass to N-body halos. We find that the DE models leave a distinct signature on the HI spectra across a wide range of scales, which correlates with differences in the halo mass function and the onset of the non-linear regime of clustering. In the case of the non-standard DM model significant differences of the HI spectra with respect to the LCDM model only arise from the suppressed abundance of low mass halos. These cosmological model dependent features also appear in the 21cm spectra. In particular, we find that future SKA measurements can distinguish the imprints of DE and DM models at high statistical significance.
description: to be submitted, comments welcome
Effectual gravitational-wave template banks for coalescing compact binaries using a hybrid placement algorithm
Creators: name: Roy, Soumen
name: Sengupta, Anand S.
name: Ajith, Parameswaran
Publisher: name: arXiv
Year: 2017
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Recent discoveries of gravitational wave (GW) signals from astrophysical compact binary systems of neutron stars and black holes have firmly established them as prime sources for advanced GW detectors. Theoretical templates of expected signals from such systems have been used to filter the detector data using the \emph{matched filtering} technique. An efficient grid over the parameter space at a fixed minimal match has a direct impact on improving the computational efficiency of these searches. We present the construction of three-dimensional template banks (in component masses and an effective spin parameter) by incorporating several new optimizations to the hybrid geometric-random template placement algorithm that we proposed recently. These optimizations allow us to create more efficient template banks in future compact binary searches by shrinking the hybrid banks by $\sim 34\%$ in comparison to the basic algorithm. Such optimized banks are also found to be $\sim 22\%$ smaller than the optimized stochastic bank constructed over a nominal range of parameters. We also construct an explicit hybrid template bank with parameters identical to the `uber-bank' used in the recently-concluded CBC searches in the second observation run of the Advanced LIGO and Virgo detectors. We demonstrate a reduction of more than 53,000 templates over the stochastic template bank at a near-identical coverage as determined by fitting factor studies. A computationally efficient technique for semi-numerical calculation of the parameter space metric, applicable for aligned-spin waveform family, is also outlined. The resulting hybrid template banks can be generated much faster in comparison to the stochastic banks, and are ready to be used in the upcoming observation runs of Advanced LIGO and Virgo.
description: The new title: Effectual template banks for upcoming compact binary searches in Advanced-LIGO Virgo data
Additional file 12 of PM2.5 promotes NSCLC carcinogenesis through translationally and transcriptionally activating DLAT-mediated glycolysis reprograming
Creators: name: Chen, Qianqian
name: Wang, Yiling
name: Yang, Lin
name: Sun, Liyuan
name: Wen, Yuxin
name: Huang, Yongyi
name: Gao, Kaiping
name: Yang, Wenhan
name: Bai, Feng
name: Ling, Lijuan
name: Zhou, Zizi
name: Zhang, Xiaoming
name: Xiong, Juan
name: Zhai, Rihong
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 12: Table S4. Genes with significant change in translation efficiency (TE) in PM2.5-exposed BEAS-2B cells.
Suslov problem with the Klebsh-Tisserand potential
Creators: name: Hu, Shengda
name: Santoprete, Manuele
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: In this paper, we study a nonholonomic mechanical system, namely the Suslov problem with the Klebsh-Tisserand potential. We analyze the topology of the level sets defined by the integrals in two ways: using an explicit construction and as a consequence of the Poincaré-Hopf theorem. We describe the flow on such manifolds.
Additional file 1 of Phylogenomic analysis of the diversity of graspetides and proteins involved in their biosynthesis
Creators: name: Makarova, Kira S.
name: Blackburne, Brittney
name: Wolf, Yuri I.
name: Nikolskaya, Anastasia
name: Karamycheva, Svetlana
name: Espinoza, Marlene
name: Barry, Clifton E.
name: Bewley, Carole A.
name: Koonin, Eugene V.
Publisher: name: figshare
Year: 2022
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics

description: Additional file 1. Figure S1. Identification of microviridin related BGC in two Bog Bacteria Genomes. A. Organization of microviridin related loci. MEBOG06 and MEBOG07—two Chryseobacterium sp. genomes where the loci have been identified. Coordinates of the loci indicated on the right. B. Chryseobacterium MEBOG06 and MEBOG07 microviridin precursor peptides aligned with two of the closely related precursor peptides from known Chryseobacterium genomes. Class III precursor peptides as per classification in Ahmed et al, 2017. Green—leader region motif, blue—GG motif, red—core motif as per Ahmed et al. [15] and Lee et al. [24]. 600003570, 600003571, 600003572 are microviridin precursor peptides from MEBOG06; 700001629, 700001630 are microviridin precursor peptides from MEBOG07.
Additional file 3 of Transcriptome analysis reveals underlying immune response mechanism of fungal (Penicillium oxalicum) disease in Gastrodia elata Bl. f. glauca S. chow (Orchidaceae)
Creators: name: Wang, Yanhua
name: Gao, Yugang
name: Zang, Pu
name: Xu, Yue
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 3: Table S3. Enriched KEGG pathways.
A simple proof of the Eichler-Selberg trace formula
Creators: name: Popa, Alexandru A.
name: Zagier, Don
Publisher: name: arXiv
Year: 2017
Subjects: subject: Number Theory (math.NT)
subject: FOS: Mathematics
subject: 11F11, 11F25, 11F67

description: We give a short proof of the trace formula for Hecke operators on modular forms for the modular group, using the action of Hecke operators on the space of period polynomials.
description: 14 pages. Final version, to appear in J. Reine Angew. Math
Lambda hyperon polarization in relativistic heavy ion collisions from the chiral kinetic approach
Creators: name: Sun, Yifeng
name: Ko, Che Ming
Publisher: name: arXiv
Year: 2017
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Based on the chiral kinetic approach using initial conditions from a multiphase transport model, we study the spin polarizations of quarks and antiquarks in non-central heavy ion collisions at the Relativistic Heavy Ion Collider. Because of the non-vanishing vorticity field in these collisions, quarks and antiquarks are found to acquire appreciable spin polarizations in the direction perpendicular to the reaction plane. Converting quarks and antiquarks to hadrons via the coalescence model, we further calculate the spin polarizations of Lambda and anti-Lambda hyperons and find their values comparable to those measured in experiments by the STAR Collaboration.
description: 6 pages, 4 figures
Additional file 3 of Immunological and clinicopathological characteristics of C1RL in 2120 glioma patients
Creators: name: Wang, Junyou
name: Tong, Luqing
name: Lin, Gaojun
name: Wang, Hui
name: Zhang, Liang
name: Yang, Xuejun
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: Additional file 3 Table S3. C1RL and WHO grade and glioma histopathology.
Additional file 2 of Phylogenomic analysis of the diversity of graspetides and proteins involved in their biosynthesis
Creators: name: Makarova, Kira S.
name: Blackburne, Brittney
name: Wolf, Yuri I.
name: Nikolskaya, Anastasia
name: Karamycheva, Svetlana
name: Espinoza, Marlene
name: Barry, Clifton E.
name: Bewley, Carole A.
name: Koonin, Eugene V.
Publisher: name: figshare
Year: 2022
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics

description: Additional file 2. Figure S2. Multiple alignments of selected protein families. A. Selected representatives taken from multiple alignment of precursors from cluster 2. Conserved residues in leader region are colored green, double glycine motif—blue, amino acids involved in ester and amide bonds formation—red; Underlined residues correspond to motifs of groups 8, 9 and 11 described in Lee et al. [24]. In addition, consensus sequences from Salinispora and cluster 199 aligned manually to show similarity within leader region. Abbreviations: gr8, gr9 and gr11—sequences with identified motifs of respective groups of core peptides delineated in Lee et al. [24]; “no”—sequences with no identified motifs delineated in Lee et al. [24]. B. Selected representatives taken from multiple alignment of precursors from cluster 13. Coloring is the same as in the Supplementary Figure 2A. Abbreviations: gr3, gr4, gr5 and gr6—sequences with identified motifs of respective groups of core peptides delineated in Lee et al. [24], respective motifs are underlined; “no”—sequences with no identified motifs delineated in Lee et al. [24]. The regions with a single core motif are shown by the red outline. C. Multiple alignment of LPL family of proteins. Alignments were colored using http://www.bioinformatics.org/sms2/color_align_cons.html server with default amino acid groups with 50% consensus. D. Multiple alignment of Cluster 23 and homologs. Alignments were colored using http://www.bioinformatics.org/sms2/color_align_cons.html server with default amino acid groups with 70% consensus. Residues within signal peptide region are colored cyan. Positions with conserved histidine, aspartate and asparagine marked by red letters H, D and R above the alignment. E. Multiple sequence alignment of chryseoviridin-like precursors. Alignments were colored using http://www.bioinformatics.org/sms2/color_align_cons.html server with default amino acid groups with 100% consensus. Amino acids shown experimentally to be involved in formation of lactam linkages are mapped on the CdnA3 sequence (Zhao et al., 2021).
Dynamics of the Optical Spin Hall Effect
Creators: name: Schmidt, Daniel
name: Berger, Bernd
name: Bayer, Manfred
name: Schneider, Christian
name: Kamp, Martin
name: Höfling, Sven
name: Sedov, Evgeny
name: Kavokin, Alexey
name: Aßmann, Marc
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We study the time evolution of the Optical Spin Hall Effect (OSHE), which occurs when exciton-polaritons undergo resonant Rayleigh scattering. The resulting spin pattern in momentum space is quantified by calculating the degree of circular polarization of the momentum space image for each point in time. We find the degree of circular polarization performing oscillations, which can be described within the framework of the pseudospin model by Kavokin et al. (Ref. 1).
description: 6 pages, 4 figures
MOESM2 of The selective cathepsin K inhibitor MIV-711 attenuates joint pathology in experimental animal models of osteoarthritis
Creators: name: LindstrĂśm, Erik
name: Rizoska, Biljana
name: Tunblad, Karin
name: Edenius, Charlotte
name: Bendele, Alison
name: Maul, Don
name: Larson, Michael
name: Shah, Neha
name: Otto, Valerie Yoder
name: Jerome, Chris
name: Grabowska, Urszula
Publisher: name: figshare
Year: 2018
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer

description: Additional file 2. Dog partial medial meniscectomy modelâ histology.
Astrotourism in Cyprus: An Approach to Sustainable and Responsible Tourism
Creators: name: Vilanidou, Maria
Publisher: name: Zenodo
Year: 2024

description: Presented during the 14th GENEVA FORUM, Geneva – Switzerland, 11 -15 Dec 2023

Abstract:

A journey through the celestial marvels of Cyprus as we unveil an interesting project of sustainable and responsible tourism. Cyprus, celebrated for its celestial wonders, favorable climate, and strategic location, provides an extraordinary canvas for stargazing and astronomical tourism.

Our contribution unravels the collaborative endeavor that brought together stakeholders from diverse sectors, including education, research, technology, astronomy, tourism, and sustainability. Their collective mission was to create captivating Astrotourism experiences while embracing innovation, sustainability, and a profound respect for nature. This initiative was rooted in a thorough examination of international Astrotourism best practices, with a keen focus on innovative and nature-conscious aspects adapted to the local context.

We spotlight the comprehensive sustainability framework that underpins the Cypriot Astrotourism effort, showcasing its multifaceted contributions to sustainability enhancement, visitor/citizen engagement, and environmental consciousness, highlighting the framework’s role in preserving the night sky.

The experience of Cyprus stands as a testament to how innovation and the respect for the rights of the natural ecology can drive sustainable tourism while preserving and celebrating unique natural assets. This is an invitation to explore the cosmos and an inspiring journey towards a future where sustainable tourism and environmental conservation coexist harmoniously while getting people to respect the environment, life and our position in the universe.

The Research & Development Project Astrotourism is co-funded by the European Regional Development Fund and the Republic of Cyprus through the Research and Innovation Foundation.
Eco-friendly green synthesised nano iron particles from weed leaf extract: a potential nutritional source for enhancing the germination and yield of aerobic rice
Creators: name: Kurdekar, Akshay Kumar
name: Marulappa, Jayadeva H.
name: Sannagoudar, Manjanagouda S.
name: Suresh, Kamala Bai
name: Ayyappa, Sathish
name: Kumargoud, Viresh
name: Manjunath, Vinay Kumar
name: Mahmoud, Eman A.
name: Elansary, Hosam O.
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Sociology
subject: FOS: Sociology

description: The green synthesis of nanoiron particles as a source of nutrition for crops has gained greater importance due to its multifunctional applications and easy and eco-friendly process. Deficiency of iron is a serious nutritional problem in aerobic rice production, and this problem can be solved by using green synthesised nanoiron fertiliser as a nutritional source. The aim of the present study is to prepare green leaf extracts, synthesise and characterise iron nanoparticles, and evaluate seed priming effects on germination and yield of aerobic rice. In the present study, nanoiron particles have been synthesised using leaf extract of Bidens pilosa and characterised using various instruments, viz. UV-visible spectroscopy, particle size analyzers, scanning electron microscopy (SEM), SEM-EDS, and atomic force microscopy (AFM). Further synthesised nanoiron was used as a seed priming and folair application for boosting the germination of aerobic rice.
Fighting passport fraudulence using DNA analyses
Creators: name: Love, Telia
name: Handt, Oliva
name: Linacre, Adrian
Publisher: name: Taylor & Francis
Year: 2023
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Passports are the number one form of individual identification when crossing borders resulting in counterfeit or modified passports being used to allow illegal travel. Here we report on the use of Diamond Dye to detect cells deposited by touch onto parts of the photograph page of a passport. The passport page was divided into a grid of 11 rectangles of approximately equal dimensions. Thumbprints were deposited at 10 of the 11 squares, with the 11th left blank as a negative control. The location and number of deposited cells were determined and recorded. Cellular material was removed from each square separately, using a moistened swab or a tapelift. Tapelifting was better suited for the substrate resulting in an increase in DNA recovered. The highest total quantity of DNA isolated from the 10 samples post extraction was 0.162 ng. Short tandem repeat data were obtained from all 10 samples using the GlobalFilerTM PCR Amplification Kit. The DNA profiles were single source or two-person mixtures and the donor was always the major contributor. These data show the potential to visualize cellular material deposited by touch and then generate STR data from an item such as a passport after only brief physical contact.
Magnetic Monopoles and Free Fractionally Charged States at Accelerators and in Cosmic Rays
Creators: name: Kephart, Thomas W.
name: Leontaris, George K.
name: Shafi, Qaisar
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Unified theories of strong, weak and electromagnetic interactions which have electric charge quantization predict the existence of topologically stable magnetic monopoles. Intermediate scale monopoles are comparable with detection energies of cosmic ray monopoles at IceCube and other cosmic ray experiments. Magnetic monopoles in some models can be significantly lighter and carry two, three or possibly even higher quanta of the Dirac magnetic charge. They could be light enough for their effects to be detected at the LHC either directly or indirectly. An example based on a D-brane inspired $SU(3)_C\times SU(3)_L\times SU(3)_R$ (trinification) model with the monopole carrying three quanta of Dirac magnetic charge is presented. These theories also predict the existence of color singlet states with fractional electric charge which may be accessible at the LHC.
description: 18 pages, 2 figures, minor revisions, references added
Additional file 4 of Transcriptome analysis reveals underlying immune response mechanism of fungal (Penicillium oxalicum) disease in Gastrodia elata Bl. f. glauca S. chow (Orchidaceae)
Creators: name: Wang, Yanhua
name: Gao, Yugang
name: Zang, Pu
name: Xu, Yue
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 4: Table S4. Concentration, purity and integrity of total RNA.
Catherine Ford - Nurse in Wartime
Creators: name: Project Team, Their Finest Hour
Publisher: name: University of Oxford
Year: 2024
Subjects: classificationCode: 430304
subject: British history
classificationCode: 430308
subject: European history (excl. British, classical Greek and Roman)
classificationCode: 430316
subject: International history

description: Catherine Ford, or Kitty as she was known as, was born in 1921 at 84 Egerton Road, South Shields. Kitty started her nurse training on the 1st of April, 1940 at Sunderland General Hospital and stayed there until the 30th of September, 1943. In Sunderland, in April, 1941 the large department store called Binns suffered a heavy bombing attack on that day and because it was largely a glass building, there was a huge amount of damage done to the building and the glass flew everywhere into the main street in Sunderland, so there was a lot of casualties. People were killed and a lot of people were injured by this flying glass. Kitty being a student nurse was called into action because a lot of the doctors had been called up for national service and had to be at the war, so she had to administer a lot more medical assistance than normally would've been the case. The Air Raid Precautions (ARP) wardens would bring in the wounded and if they'd given them morphine to reduce the pain, they would write an 'M' on the person's forehead, which indicated that they had being given morphine. One of her jobs was to pull out glass out of the injured people before they were being prepared for an operation she also took part in some of the operations alongside the doctors.After this, she then moved down to Carshalton in Surrey to complete her midwife training. This was in the middle of 1944. This was the period known as the Doodlebug Summer when the Doodlebugs or V1 flying bombs, were launched against London at this point. She was based at St. Helier's Hospital in Surrey this suffered a number of attacks and the hospital was painted grey to try and prevent it being spotted from the air.During the war she was engaged in other duties as well as apart from being in training "had to deliver babies in the Underground with my gas mask and tin hat on".After the war, she worked in fever hospitals, became a midwife, then a health visitor and in 1988 she retired. Just before she retired in 1977, because of her contribution to nursing some of her colleagues recommended her to receive the Queen Silver Jubilee Medal. She died in 2019 at the age of 98.Audio and transcription attached
Additional file 3 of Phylogenomic analysis of the diversity of graspetides and proteins involved in their biosynthesis
Creators: name: Makarova, Kira S.
name: Blackburne, Brittney
name: Wolf, Yuri I.
name: Nikolskaya, Anastasia
name: Karamycheva, Svetlana
name: Espinoza, Marlene
name: Barry, Clifton E.
name: Bewley, Carole A.
name: Koonin, Eugene V.
Publisher: name: figshare
Year: 2022
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics

description: Additional file 3. Figure S3. Diversity of precursors associated with Branch 5 ATP-grasps. The ATP_grasp subtree corresponding to branch 5 is shown. Cluster number of precursors identified in the respective ATP-grasp loci are indicated on the right.
Lily and Margaret Younger - Munitions Workers
Creators: name: Project Team, Their Finest Hour
Publisher: name: University of Oxford
Year: 2024
Subjects: classificationCode: 430304
subject: British history
classificationCode: 430308
subject: European history (excl. British, classical Greek and Roman)
classificationCode: 430316
subject: International history

description: Lily and Margaret Younger were aged 20 and 18; they lived at 344 Stanhope Road, South Shields.When the war started, Lily wanted to join the Wrens (WRNS), but unfortunately she was too small. During the war, she was conscripted to work in a munitions factory in Birmingham, but was so small that "she had to stand on a box to operate the machines”. She was rather proud of her small stature and often quoted her dad's expression that "there is good stuff in little bundles!" She rather enjoyed her new independence and the flattering attention of American soldiers who had lots of money and more glamorous uniforms than the English soldiers.Margaret and Lily stayed in Birmingham in a normal working class house with a "landlady". Due to the shortage of nylon stockings, Margaret remembered "we used to colour our legs with gravy browning and draw a seam on our legs with an eyeliner pencil", it was called "Liquid Stockings".At the end of the war, parties were held everywhere to celebrate victory; there are several photos attached showing parties inside the munitions factories including a "Victory 1945" cake.Margaret carried on working after the war, but Lily like a lot of women went home to look after her father and never worked again after the war.Audio and transcription attached.
When and Why People Have Goals for Emotion Experience and Expression
Creators: name: Kalokerinos, Elise
name: Greenaway, Katharine
name: O'Brien, Sarah T.
Publisher: name: OSF Registries
Year: 2023
Subjects: subject: Medicine and Health Sciences
subject: Social Psychology
subject: Social and Behavioral Sciences
subject: Psychology
subject: FOS: Psychology

description: Experience and expression are orthogonal dimensions of emotion: we do not always show what we feel, nor do we always feel what we show. However, experience and expression dimensions of emotion are rarely considered simultaneously in the emotion regulation literature. Doing so distinguishes four unique emotion goals: (1) to experience and express emotion; (2) to experience but not express emotion; (3) to express but not experience emotion; and (4) to neither experience nor express emotion. These different combinations of emotion goals are likely to be held in different social contexts that either call for the alignment (e.g., when authenticity is valued) or misalignment (e.g., when deception is needed) of emotion experience and expression. A 14-day daily diary study assessed the frequency of emotion goals in everyday life, as well as features of the social context, intensity of experienced emotion, and motives for regulating emotion as potential correlates of emotion goals.
Additional file 2: of Inhibition of DREAM-ATF6 interaction delays onset of cognition deficit in a mouse model of Huntington’s disease
Creators: name: López-Hurtado, Alejandro
name: Burgos, Daniel
name: González, Paz
name: Xose Dopazo
name: González, Valentina
name: Rábano, Alberto
name: Mellström, Britt
name: Naranjo, Jose
Publisher: name: figshare
Year: 2018
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Science Policy

description: Case information for human samples used in this study. (DOCX 43 kb)
Pulse shaping in the terahertz frequency range for the control of photo-excited carriers in graphene
Creators: name: Gagnon, Denis
name: Dumont, Joey
name: Fillion-Gourdeau, François
name: MacLean, Steve
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Computational Physics (physics.comp-ph)
subject: Optics (physics.optics)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The shape of a few-cycle terahertz (THz) laser pulse can be optimized to provide control over conduction band populations in graphene. To demonstrate this control in a theoretical way, a spectral parametrization of the driving pulse using $B$-splines is used in order to obtain experimentally realistic pulses of bandwidth $\sim$ 30 THz. Optimization of the spectral shape is performed via differential evolution, using the $B$-splines expansion coefficients as decision variables. Numerical results show the possibility of changing the carrier density in graphene by a factor of 4 for a fixed pulse energy. In addition, we show that it is possible to selectively suppress or enhance multi-photon absorption features by optimizing over narrow windows in reciprocal space. The application of pulse shaping to the control of scattering mechanisms in graphene is also discussed.
description: Accepted for publication in JOSA B: https://www.osapublishing.org/josab/upcoming_pdf.cfm?id=332603
Simulating streamer discharges in 3D with the parallel adaptive Afivo framework
Creators: name: Teunissen, Jannis
name: Ebert, Ute
Publisher: name: arXiv
Year: 2017
Subjects: subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: We present an open-source plasma fluid code for 2D, cylindrical and 3D simulations of streamer discharges, based on the Afivo framework that features adaptive mesh refinement, geometric multigrid methods for Poisson's equation, and OpenMP parallelism. We describe the numerical implementation of a fluid model of the drift-diffusion-reaction type, combined with the local field approximation. Then we demonstrate its functionality with 3D simulations of long positive streamers in nitrogen in undervolted gaps, using three examples. The first example shows how a stochastic background density affects streamer propagation and branching. The second one focuses on the interaction of a streamer with preionized regions, and the third one investigates the interaction between two streamers. The simulations run on up to $10^8$ grid cells within less than a day. Without mesh refinement, they would require $4\cdot 10^{12}$ grid cells.
The fall of the Northern Unicorn: Tangential motions in the Galactic Anti-centre with SDSS and Gaia
Creators: name: de Boer, T. J. L.
name: Belokurov, V.
name: Koposov, S. E.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We present the first detailed study of the behaviour of the stellar proper motion across the entire Galactic Anti-centre area visible in the Sloan Digital Sky Survey data. We use recalibrated SDSS astrometry in combination with positions from {\it Gaia} DR1 to provide tangential motion measurements with a systematic uncertainty $
description: Submitted to MNRAS. comments welcome
The Mpemba index and anomalous relaxation
Creators: name: Klich, Israel
name: Raz, Oren
name: Hirschberg, Ori
name: Vucelja, Marija
Publisher: name: arXiv
Year: 2017
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: The Mpemba effect is a counter-intuitive relaxation phenomenon, where a system prepared at a hot temperature cools down faster than an identical system initiated at a cold temperature when both are quenched to an even colder bath. Such non-monotonic relaxations were observed in various systems, including water, magnetic alloys, polymers, and driven granular gases. We analyze the Mpemba effect in Markovian dynamics and discover that a stronger version of the effect often exists for a carefully chosen set of initial temperatures. In this \emph{strong Mpemba effect}, the relaxation time jumps to a smaller value leading to exponentially faster equilibration dynamics. The number of such special initial temperatures defines the \emph{Mpemba index}, whose parity is a topological property of the system. To demonstrate these concepts, we first analyze the different types of Mpemba relaxations in the mean field anti-ferromagnet Ising model, which demonstrates a surprisingly rich Mpemba phase diagram. Moreover, we show that the strong effect survives the thermodynamic limit and that it is tightly connected with thermal overshoot -- in the relaxation process, the temperature of the relaxing system can decay non-monotonically as a function of time. Using the parity of the Mpemba index, we then study the occurrence of the strong Mpemba effect in a large class of thermal quench processes and show that it happens with non-zero probability even in the thermodynamic limit. This is done by introducing the \emph{isotropic} model for which we obtain analytical lower bound estimates for the probability of the strong Mpemba effects. Consequently, we expect that such exponentially faster relaxations can be observed experimentally in a wide variety of systems.
Sneutrino DM in the NMSSM with inverse seesaw mechanism
Creators: name: Cao, Junjie
name: Guo, Xiaofei
name: He, Yangle
name: Shang, Liangliang
name: Yue, Yuanfang
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: In supersymmetric theories like the Next-to-Minimal Supersymmetric Standard Model (NMSSM), the lightest neutralino with bino or singlino as its dominant component is customarily taken as dark matter (DM) candidate. Since light Higgsinos favored by naturalness can strength the couplings of the DM and thus enhance the DM-nucleon scattering rate, the tension between naturalness and DM direct detection results becomes more and more acute with the improved experimental sensitivity. In this work, we extend the NMSSM by inverse seesaw mechanism to generate neutrino mass, and show that in certain parameter space the lightest sneutrino may act as a viable DM candidate, i.e. it can annihilate by multi-channels to get correct relic density and meanwhile satisfy all experimental constraints. The most striking feature of the extension is that the DM-nucleon scattering rate can be naturally below its current experimental bounds regardless of the higgsino mass, and hence it alleviates the tension between naturalness and DM experiments. Other interesting features include that the Higgs phenomenology becomes much richer than that of the original NMSSM due to the relaxed constraints from DM physics and also due to the presence of extra neutrinos, and that the signatures of sparticles at colliders are quite different from those with neutralino as DM candidate.
description: 33 pages
Additional file 1: of Genome sequence of an aflatoxigenic pathogen of Argentinian peanut, Aspergillus arachidicola
Creators: name: Geromy Moore
name: Mack, Brian
name: Beltz, Shannon
name: Puel, Olivier
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 60506 Virology

description: Figure S1. Comparison of aflatoxin and CPA gene clusters for A. arachidicola and several aflatoxin B + G species’ type strains. The schematic diagram (A) shows the orientation and relative sizes (bp) of genes in the aflatoxin gene cluster of A. arachidicola (CBS 117610; red), A. parasiticus (SU-1; green), A. nomius (NRRL 13137; blue) and A. bombycis (NRRL 26010; purple). Panel B shows the orientation and relative sizes (bp) of genes in the CPA gene cluster of A. arachidicola (CBS 117610; red), A. nomius (NRRL 13137; blue) and A. bombycis (NRRL 26010; purple). The A. parasiticus type strain did not contain a cluster of CPA genes. Panel C shows the orientation and distance (bp) separating the aflatoxin and CPA gene clusters in A. arachidicola (CBS 117610; red). The respective gene clusters and their distances, in A. nomius and A. bombycis, were not found to share the same contig; therefore, they could not be determined. (PDF 587 kb)
Additional file 4 of Phylogenomic analysis of the diversity of graspetides and proteins involved in their biosynthesis
Creators: name: Makarova, Kira S.
name: Blackburne, Brittney
name: Wolf, Yuri I.
name: Nikolskaya, Anastasia
name: Karamycheva, Svetlana
name: Espinoza, Marlene
name: Barry, Clifton E.
name: Bewley, Carole A.
name: Koonin, Eugene V.
Publisher: name: figshare
Year: 2022
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics

description: Additional file 4. Figure S4. Comparison of pheganomycin BGC locus and partly similar locus from Streptomyces viridosporus T7A. Genes are shown by block arrows, roughly to scale. Homologous genes present in both loci connected by dashed lines and the percent of identical residues is indicated in red. A table with gene annotation for both loci is shown below.
Additional file 5 of Transcriptome analysis reveals underlying immune response mechanism of fungal (Penicillium oxalicum) disease in Gastrodia elata Bl. f. glauca S. chow (Orchidaceae)
Creators: name: Wang, Yanhua
name: Gao, Yugang
name: Zang, Pu
name: Xu, Yue
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 5: Table S5. Primer pair sequences for qRT-PCR.
SlowFuzz: Automated Domain-Independent Detection of Algorithmic Complexity Vulnerabilities
Creators: name: Petsios, Theofilos
name: Zhao, Jason
name: Keromytis, Angelos D.
name: Jana, Suman
Publisher: name: arXiv
Year: 2017
Subjects: subject: Cryptography and Security (cs.CR)
subject: FOS: Computer and information sciences

description: Algorithmic complexity vulnerabilities occur when the worst-case time/space complexity of an application is significantly higher than the respective average case for particular user-controlled inputs. When such conditions are met, an attacker can launch Denial-of-Service attacks against a vulnerable application by providing inputs that trigger the worst-case behavior. Such attacks have been known to have serious effects on production systems, take down entire websites, or lead to bypasses of Web Application Firewalls. Unfortunately, existing detection mechanisms for algorithmic complexity vulnerabilities are domain-specific and often require significant manual effort. In this paper, we design, implement, and evaluate SlowFuzz, a domain-independent framework for automatically finding algorithmic complexity vulnerabilities. SlowFuzz automatically finds inputs that trigger worst-case algorithmic behavior in the tested binary. SlowFuzz uses resource-usage-guided evolutionary search techniques to automatically find inputs that maximize computational resource utilization for a given application.
description: ACM CCS '17, October 30-November 3, 2017, Dallas, TX, USA
Thomas Paxton - The After Effects of War
Creators: name: Project Team, Their Finest Hour
Publisher: name: University of Oxford
Year: 2024
Subjects: classificationCode: 430304
subject: British history
classificationCode: 430308
subject: European history (excl. British, classical Greek and Roman)
classificationCode: 430316
subject: International history

description: Thomas "Tucker" Paxton lived at 342 South Frederick Street, South Shields. He was captured in the early stages of the war when he was in a tank that was blown up, resulting in a broken leg. He was sent first to Stalag 20B at Marienburg, Poland, then to Stalag 8A, just south of the town of Görlitz on the Polish border. He sent many letters from the POW camp to his parents.When he returned from the war, his niece Lynn Wilson was told by her father: "He was very unsettled. He couldn't stay in one job. He couldn't settle into a job or a life. He got married quickly to a relative's sister-in-law. The marriage didn't last. He went to Canada to try and find work. He wasn't there long. He'd come back. He couldn't settle down into anything, but eventually he did. He moved to Hastings and worked in Hastings and stayed there and married again and settled down there and that was it. He never once spoke about the war, ever."When he returned, he was extremely emaciated, and his mother died shortly after his return, which made it difficult for him to adjust to post-war life.Transcription attached.
Hyperfield Grassmannians
Creators: name: Davis, James F.
name: Anderson, Laura
Publisher: name: arXiv
Year: 2017
Subjects: subject: Combinatorics (math.CO)
subject: Algebraic Geometry (math.AG)
subject: Algebraic Topology (math.AT)
subject: Geometric Topology (math.GT)
subject: FOS: Mathematics
subject: 05B35 (primary), 52C40, 52B40, 57R20, 54H13, 12J99 (secondary)

description: In a recent paper Baker and Bowler introduced matroids over hyperfields, offering a common generalization of matroids, oriented matroids, and linear subspaces of based vector spaces. This paper introduces the notion of a topological hyperfield and explores the generalization of Grassmannians and realization spaces to this context, particularly in relating the (hyper)fields R and C to hyperfields arising in matroid theory and in tropical geometry.
description: 31 pages. Final version
MOESM1 of The selective cathepsin K inhibitor MIV-711 attenuates joint pathology in experimental animal models of osteoarthritis
Creators: name: LindstrĂśm, Erik
name: Rizoska, Biljana
name: Tunblad, Karin
name: Edenius, Charlotte
name: Bendele, Alison
name: Maul, Don
name: Larson, Michael
name: Shah, Neha
name: Otto, Valerie Yoder
name: Jerome, Chris
name: Grabowska, Urszula
Publisher: name: figshare
Year: 2018
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Marine Biology

description: Additional file 1. Rabbit anterior cruciate ligament transection modelâ histology.
Additional file 5 of Phylogenomic analysis of the diversity of graspetides and proteins involved in their biosynthesis
Creators: name: Makarova, Kira S.
name: Blackburne, Brittney
name: Wolf, Yuri I.
name: Nikolskaya, Anastasia
name: Karamycheva, Svetlana
name: Espinoza, Marlene
name: Barry, Clifton E.
name: Bewley, Carole A.
name: Koonin, Eugene V.
Publisher: name: figshare
Year: 2022
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics

description: Additional file 5. Figure S5. Phylogenetic analysis of chryseoviridin precursors. Approximate maximum likelihood phylogenetic tree was built using FastTree (WAG evolutionary model, gamma distributed site rates) (Price et al. [48]). Same program was used to calculated support values, which are indicated for each branch. Four distinct branches 1 to 4 are colored by orange, green, magenta and blue respectively. Precursors from Chryseobacterium gregarium DSM 19109 are underlined.
Investigation of Local Anesthesia for Abdominoplasty: Scoping Review Protocol
Creators: name: Zhou, Ted
name: Nasimul Huq
name: Hubbard, Madeline
name: Seddiq Weera
Publisher: name: OSF Registries
Year: 2023
Subjects: subject: Anesthesiology
subject: Medicine and Health Sciences
subject: Medical Specialties
subject: Plastic Surgery

description: Abdominoplasty is the sixth most commonly performed aesthetic surgical procedure in the world. It is typically performed under general anesthesia with endotracheal intubation. However, performing surgery under general anesthesia is an aerosol-generating medical procedure and increases the risk of serious systemic complications such as deep vein thrombosis (DVT) and pulmonary embolism (PE). There has been increasing interest in employing local anesthetic for surgical procedures. Local anesthetic techniques, such as tumescent solution and epidural blocks, have been linked to potential advantages such as low reported incidence of post-operative complications and lower costs. To date, there has been no literature review synthesizing data on the outcomes and safety of abdominoplasty under conscious sedation or local anesthesia. Further information regarding this scoping review can be found in the attached .pdf file.