cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Multiple Fano interferences due to waveguide-mediated phase-coupling between atoms
Creators: name: Mukhopadhyay, Debsuvra
name: Agarwal, Girish S.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We examine quantum interference effects due to absorption and emission from multiple atoms coupled to a waveguide and highlight the modifications they entail in regards to single-photon transport properties. A prominent upshot of these interference phenomena is the resonant suppression of the reflection amplitude, which leads to the observation of multiple Fano minima in the reflection spectrum. Such minima determine the points at which transparency is induced in the system. By taking recourse to the real-space Hamiltonian framework, we calculate analytically the reflectivity and transmissivity for a one-dimensional waveguide that evanescently couples to a chain of equally spaced quantum emitters. The inter-emitter spacing relative to the wavelength of the propagating photon, leading to a waveguide-mediated "phase-coupling" between the atoms, is found to fundamentally affect the existence of Fano minima. For a chain of $N$ atoms, the number of minima can be at most $N-1$. However, suitable choices of the phase can suppress the discernibility of the full range of roots in the reflection spectrum. A principal observation for the case of multiple emitters is the emergence of super-Gaussian characteristics close to zero-detuning and consequently, a plateau-shaped broadband spectrum in the region of high reflectivity. For a large chain size, the plateau gets transformed into a flat-topped quasi-rectangular profile in the frequency domain.
description: 10 pages, 4 figures
Comparisons and Analysis of Object Locking , Field Locking and Commutativity Locking in Industrial Platform Environment
Creators: name: Patel, Jayeshkumar Madhubhai
Publisher: name: figshare
Year: 2019
Subjects: Applied Computer Science

description: While the dominant approach to persistent storage in practice is to use a relational DBMS, there are some specialist applications that rely on object stores. The performance of these applications depends on the efficiency of the object store's concurrency control mechanism. Today's predominant concurrency control mechanism is strict two-phase object locking. In the 1980s, an interesting alternative was developed: commutativity-based semantic locking. In theory, it can outperform traditional locking schemes in certain scenarios with appropriate commutativity potential. In this paper, we study the real-world performanceof different locking strategies in a particular industrial application from the telecommunications sector. We compare object-based locking and commutativity- based semantic locking. We found that, in this application, semantic locking performs equally to, but no better than,object locking in reasonable mixes of real- world transactions, and that it only outperforms in a deliberately contrived mix.
APPLICATION OF THE METHOD OF EXCEPTIONS IN OBTAINING RATIONAL VALUES OF THE KINETIC EQUATION FOR THE WHEAT GRAIN DRYING PROCESS
Creators: name: Ya.A. Panova
name: S.S. Belyaeva
Publisher: name: Zenodo
Year: 2024

description: Using the criterion of efficiency and application of the systems described in the work, it was possible to determine rational values for the criteria of the kinetic equation that ensure maximum efficiency of the drum unit for dried grain.

A correlation graph was constructed showing the spread between the experimental and calculated values of the simplex moisture content.
Acrostichum viviparum L. f.
Creators: name: Callmander, Martin W.
name: Mazumdar, Jaideep
name: Jarvis, Charles E.
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Polypodiopsida
Polypodiales
Pteridaceae
Acrostichum
Acrostichum viviparum

description: Acrostichum viviparum L. f., Suppl. Pl.: 444. 1782.
 ≡ Asplenium viviparum (L. f.) C. Presl, Tent. Pterid.: 109, tab. 3, fig. 20. 1836 [nom. illeg.] [non Blume, 1828].
 Lectotypus (designated here): MASCARENES: “nº 26. Acrostix prolifera seu vivipara des isle[s] de France et de Bourbon ”, s.d., Commerson s.n. (LINN-HS nº 1629.13 image seen; isolecto-: MPU [MPU1036711]!, G [G00341868, G00341869]!).
 = Asplenium daucifolium Lam., Encycl. 2: 310. 1786.
 Lectotypus (designated here): MAURITIUS: “ Isle de France ”, s.d., Commerson s.n. (MPU [MPU1034656]!) (Fig. 5). (Aspleniaceae)
 Notes. – A single specimen of original material is extant in LINN-HS [LINN-HS nº 1629.23]. This specimen bears a label in Thouin’s hand to which Linnaeus f. added the epithet “vivipara”. This specimen bears the number “26” and is here designated as lectotype. Three duplicates of original material have been located in MPU [MPU1036711] and in G [G00341868, G00341869]. The G duplicates originate from the herbarium of Augustin-Pyramus de Candolle (1778–1841).
 The combination of Acrostichum viviparum in the genus Asplenium L. proposed by PRESL (1836) is illegitimate as it is a later homonym of Asplenium viviparum published by BLUME (1828). The correct name is A. daucifolium Lam. published in 1786. LAMARCK (1786: 310) cited in the protologue: “ M. Commerson a trouvé cette plante à l’Isle de France. (v.s. in h. D. Thouin)”. The original material has been located in Thouin’s herbarium in MPU. It bears in Lamarck’s hand: “ daucifolium lam. dict.” (Fig. 5). The type was mistakenly believed to be in P by MORTON (1963). A collection in P-LA [P00564950] cited by TARDIEU-BLOT (2002) as a possible isotype is not considered as original material as it was determined as “Darea” by Lamarck with no direct reference to A. daucifolium except the locality “isle de France”.
 Asplenium daucifolium is endemic to Mauritius, Réunion, and Madagascar (TARDIEU-BLOT, 2002).
description: Published as part of Callmander, Martin W., Mazumdar, Jaideep & Jarvis, Charles E., 2019, Typification and nomenclature of the western Indian Ocean islands ferns and lycophytes described in Linnaeus filius's Supplementum plantarum, pp. 223-234 in Candollea 74 (2) on page 229, DOI: 10.15553/c2019v742a11, http://zenodo.org/record/5684562
Effect of boundary conditions on diffusion in two-dimensional granular gases
Creators: name: Henrique, C.
name: Batrouni, G.
name: Bideau, D.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We analyze the influence of boundary conditions on numerical simulations of the diffusive properties of a two dimensional granular gas. We show in particular that periodic boundary conditions introduce unphysical correlations in time which cause the coefficient of diffusion to be strongly dependent on the system size. On the other hand, in large enough systems with hard walls at the boundaries, diffusion is found to be independent of the system size. We compare the results obtained in this case with Langevin theory for an elastic gas. Good agreement is found. We then calculate the relaxation time and the influence of the mass for a particle of radius $R_s$ in a sea of particles of radius $R_b$. As granular gases are dissipative, we also study the influence of an external random force on the diffusion process in a forced dissipative system. In particular, we analyze differences in the mean square velocity and displacement between the elastic and inelastic cases.
description: 15 figures eps figures, included
Localization of Electronic Wave Functions on Quasiperiodic Lattices
Creators: name: Rieth, Thomas
name: Grimm, Uwe
name: Schreiber, Michael
Publisher: name: arXiv
Year: 1998
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We study electronic eigenstates on quasiperiodic lattices using a tight-binding Hamiltonian in the vertex model. In particular, the two-dimensional Penrose tiling and the three-dimensional icosahedral Ammann-Kramer tiling are considered. Our main interest concerns the decay form and the self-similarity of the electronic wave functions, which we compute numerically for periodic approximants of the perfect quasiperiodic structure. In order to investigate the suggested power-law localization of states, we calculate their participation numbers and structural entropy. We also perform a multifractal analysis of the eigenstates by standard box-counting methods. Our results indicate a rather different behaviour of the two- and the three-dimensional systems. Whereas the eigenstates on the Penrose tiling typically show power-law localization, this was not observed for the icosahedral tiling.
description: 4 pages, 4 PostScript figures, uses sprocl.sty (included)
Radiative transitions in mesons in a non relativistic quark model
Creators: name: Bonnaz, R.
name: Silvestre-Brac, B.
name: Gignoux, C.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: In the framework of the non relativistic quark model, an exhaustive study of radiative transitions in mesons is performed. The emphasis is put on several points. Some traditional approximations (long wave length limit, non relativistic phase space, dipole approximation for E1 transitions, gaussian wave functions) are analyzed in detail and their effects commented. A complete treatment using three different types of realistic quark-antiquark potential is made. The overall agreement with experimental data is quite good, but some improvements are suggested.
description: 42 pages, 2 figures
One-loop Neutron Electric Dipole Moment from Supersymmetry without R-parity
Creators: name: Keum, Y. -Y.
name: Kong, Otto C. W.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We present a detailed analysis together with exact numerical calculations on one-loop contributions to neutron electric dipole moment from supersymmetry without R-parity, focusing on the gluino, chargino, and neutralino contributions. Apart from the neglected family mixing among quarks, complete formulae are given for the various contributions, through the quark dipole operators, to which the present study is restricted. We discuss the structure and main features of the R-parity violating contributions and the interplay between the R-parity conserving and violating parameters. In particular, the parameter combination $μ_i^*λ^{\prime}_{i11}$, under the optimal parametrization adopted, is shown to be solely responsible for the R-parity violating contributions in the supersymmetric loop diagrams. While $μ_i^*λ^{\prime}_{i11}$ could bear a complex phase, the latter is not necessary to have a R-parity violating contribution.
description: 43 pages Revtex with 15 eps- and 4 ps- figure files incoporated; proofread version to be published in Phys. Rev. D
Pica caudata subsp. melanotos A. E. Brehm
Creators: name: Lecroy, Mary
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Aves
Passeriformes
Corvidae
Pica
Pica caudata
Pica caudata melanotos a.e. brehm

description: Pica caudata melanotos A.E. Brehm
Pica caudata melanotos A.E. Brehm, 1857: 446 (Häufig in Mittelspanien und Andalusien).
Now Pica pica melanotos A.E. Brehm, 1857. See Hartert, 1918a: 8; Vaurie, 1959: 150; Blake and Vaurie, 1962: 251; Dickinson, 2003: 511; and dos Anjos, 2009: 604–605.
LECTOTYPE: AMNH 675975, adult male, collected at Madrid, 40.25N, 03.43W (Times Atlas), Spain, on 18 February 1857, by A.E. Brehm (no. 226). From the Brehm Collection via the Rothschild Collection.
COMMENTS: A.E. Brehm based his description of melanotos on specimens of Pica cudata he collected in Spain, but the size of the type series was not given and no type was designated. Hartert (1918a: 8), by listing as type the adult male collected at Madrid on 18 February 1857, designated it the lectotype of melanotos. It bears, in addition to A.E. Brehm’s original label, Rothschild Museum and type labels. One paralectotype came to AMNH with the Rothschild Collection: AMNH 675976, female, Toledo, 16 January 1857, collected by A.E. Brehm.
description: Published as part of Lecroy, Mary, 2014, Type Specimens Of Birds In The American Museum Of Natural History Part 12. Passeriformes: Ploceidae, Sturnidae, Buphagidae, Oriolidae, Dicruridae, Callaeidae, Grallinidae, Corcoracidae, Artamidae, Cracticidae, Ptilonorhynchidae, Cnemophilidae, Paradisaeidae, And Corvidae, pp. 1-165 in Bulletin of the American Museum of Natural History 2014 (393) on page 119, DOI: 10.1206/885.1, http://zenodo.org/record/4629954
Stock Index Direction Prediction Applying Artificial Neural Network: The Sample of the National Stock Exchange
Creators: name: Patel, Jayeshkumar Madhubhai
Publisher: name: figshare
Year: 2019
Subjects: Applied Computer Science

description: Artificial neural networks are highly flexible function approximates and have proved to be a very powerful soft-computing technique used for predicting direction of stock price or stock index. The stock market is a complex and dynamic system with noisy, non-stationary and chaotic data series. Prediction of a financial market is rather challenging due to chaos and uncertainty of the system. This research paper attempts to develop a feed-forward multilayer neural network model for predicting direction of S&P CNX Nifty index of National Stock Exchange (NSE) of India. The model has used daily S&P CNX Nifty index data from Jan 2006 to Oct 2012. The proposed model is trained by Levenberg-Marquardt algorithm. Only five technical indicators were selected as inputs of the proposed model. The neural network generates output between 0 and 1. Model prediction performance is measured using hit rate. If the output is greater than 0.5 then direction is considered as up and if output is less than or equal to 0.5 then direction is considered as down. After setting proper model parameters and training, experimental results show that only five technical indicators as input variable to model can effectively (82%) predict direction of Nifty index.
A molecular diamond lattice antiferromagnet as a Dirac semimetal candidate
Creators: name: Shimizu, Yasuhiro
name: Otsuka, Akihiro
name: Maesato, Mitsuhiko
name: Tsuchiizu, Masahisa
name: Nakao, Akiko
name: Yamochi, Hideki
name: Hiramatsu, Takaaki
name: Yoshida, Yukihiro
name: Saito, Gunzi
Publisher: name: arXiv
Year: 2019
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: The ground state of a molecular diamond-lattice compound (ET)Ag$_4$(CN)$_5$ is investigated by the magnetization and nuclear magnetic resonance spectroscopy. We found that the system exhibits antiferromagnetic long-range ordering with weak ferromagnetism at a high temperature of 102 K owing to the strong electron correlation. The spin susceptibility is well fitted into the diamond-lattice Heisenberg model with a nearest neighbor exchange coupling of 230 K, indicating the less frustrated interactions. The transition temperature elevates up to $\sim$195 K by applying pressure of 2 GPa, which records the highest temperature among organic molecular magnets. The first-principles band calculation suggests that the system is accessible to a three-dimensional topological semimetal with nodal Dirac lines, which has been extensively searched for a half-filling diamond lattice.
description: 5 pages, 4 figures
Additional file 2 of PlaPPISite: a comprehensive resource for plant protein-protein interaction sites
Creators: name: Yang, Xiaodi
name: Yang, Shiping
name: Qi, Huan
name: Wang, Tianpeng
name: Li, Hong
name: Zhang, Ziding
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Biochemistry
subject: Physical Sciences not elsewhere classified
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Plant Biology
subject: Virology
subject: Computational Biology

description: Additional file 2: Figure S1. The distribution of the average cellular component similarities for 1000 random networks and the predicted network. Figure S2. The distribution of the average biological process similarities for 1000 random networks and the predicted network. Figure S3. The distribution of the average molecular function similarities for 1000 random networks and the predicted network. Figure S4. The distribution of the average subcellular co-localization proportions for 1000 random networks and the predicted network. Figure S5. The distribution of the average expression profile similarities for 1000 random networks and the predicted network. Figure S6. Venn diagram showing the numbers of overlapping PPIs among two predicted PPI sets and one experimental PPI set. Figure S7. The primary subnetwork of PPI. Users can export the subnetwork alternatively for further analysis. Figure S8. A prediction platform for complex structure construction and interaction site assignment. (a) The prediction platform interface. Users can submit two protein sequences of a query PPI to retrieve the complex structure and the corresponding interaction sites. (b) A prediction result example. The predicted complex structure and the corresponding interaction sites can be downloaded on this page.
SAWs, RAWs, and FARMWORKERS
Creators: name: Martin, Philip
name: Mason, Bert
name: Martin, Philip
name: Mason, Bert
Publisher: name: Unknown
Year: 1989
Subjects: Farm Management
Labor and Human Capital

description: Agriculture was a major stumbling block to immigration reform, largely because Congress has been unwilling to assign explicit priorities to the competing goals of protecting American workers and admitting supplemental immigrant farmworkers. This paper explains the evolution and nature of California's labor-intensive agriculture, which has become dependent on immigrant workers; the Special Agricultural Worker or SAW legalization program that generated 1.3 million applications from unauthorized aliens who claimed to have done at least 90 days of farmwork in 1985- 86; and the hypothetical calculations required to determine whether Replenishment Agricultural Workers or RAWs will be admitted to do farmwork. The paper concludes that immigration reform did not resolve the century-old debate over agriculture's "need" for alien workers; instead, SAWs and RAWs have contributed to the harvest of confusion on farm labor.
Untitled Item
Creators: name: Kowalik, Rafal
Publisher: name: figshare
Year: 2019
Subjects: subject: Aerospace Engineering
subject: FOS: Mechanical engineering

description: This article discusses the operation and operation of servo drives used in unmanned aerial vehicles. In the first part, their use was shortened and the principle of operation was briefly discussed. The second part presents a mathematical model describing physical processes occurring during their work. The work also includes an overview of the signals that control the states of servo drive systems. The concept of the UAV drive system, together with real-life research, was designed to evaluate the efficiency and efficiency of the developed electronic system intended to be a subassembly of a laboratory station. The summary and the conclusions of the tests were then presented.
Additional file 2 of Antibiotic resistance gene sharing networks and the effect of dietary nutritional content on the canine and feline gut resistome
Creators: name: Kim, Younjung
name: Leung, Marcus
name: Kwok, Wendy
name: FourniÃ©, Guillaume
name: Li, Jun
name: Lee, Patrick
name: Pfeiffer, Dirk
Publisher: name: figshare
Year: 2020
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Computational Biology

description: Additional file 2:Table S2. The Kendall rank correlation between centrality metrics in the canine and feline global network.
Adiantum repens L. f.
Creators: name: Callmander, Martin W.
name: Mazumdar, Jaideep
name: Jarvis, Charles E.
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Polypodiopsida
Polypodiales
Pteridaceae
Adiantum
Adiantum repens

description: Adiantum repens L. f., Suppl. Pl.: 446. 1782.
 ≡ Davallia repens (L. f.) Kuhn, Fil. Deck.: 27. 1867 [nom. cons.]. (Davalliaceae)
 Lectotypus (designated here): MAURITIUS: “37. Adianthum de l’Isle de France ” (LINN-HS nº 1635.21 image seen; isolecto-: G [G00341867]!, MPU [MPU1063796]!).
 Notes. – While proposing the conservation of Davallia repens (L. f.) Kuhn against Davallia repens (Bory) Desv., LINDSAY & MIDDLETON (2003) correctly identified original material of Adiantum repens L. f. in LINN-H, but did not formally designate the specimen as lectotype. We formally designate here the LINN-HS [LINN-HS nº 1635.21] material as lectotype. Duplicates of original material have been located in G [G00341867] and MPU [MPU1063796]. The identity of the lectotype material corresponds with the current usage of the name.
 Davallia repens is a widespread species growing from tropical West Africa to Queensland in Australia (NOTEBOOM, 1994).
description: Published as part of Callmander, Martin W., Mazumdar, Jaideep & Jarvis, Charles E., 2019, Typification and nomenclature of the western Indian Ocean islands ferns and lycophytes described in Linnaeus filius's Supplementum plantarum, pp. 223-234 in Candollea 74 (2) on page 232, DOI: 10.15553/c2019v742a11, http://zenodo.org/record/5684562
Noether and Belinfante stress-energy tensors for theories with arbitrary Lagrangians of tensor fields
Creators: name: Ilin, R. V.
name: Paston, S. A.
Publisher: name: arXiv
Year: 2018
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We investigate the connection between stress-energy tensor (SET) arising from Noether's theorem and Belinfante SET which can be obtained as a right-hand side of the Einstein's equation in the flat metric limit. This question is studied in the wide class of Poincarè-invariant field theories with actions which depend on the tensor fields of arbitrary rank and their derivatives of arbitrary order. For this class we derive the relation between these SET and present the exact expression for the difference between them. We also show that the difference between corresponding integrals of motion can be expressed as a surface integral over 2-dimensinal infinitely remote surface.
description: LaTeX, 6 pages, based on a talk given at the International Conference PhysicA.SPb/2018, Saint Petersburg, Russia, 23-25 October 2018
“Triangle Ester” Lubricants: Useful Correlations for Wetting and Tribological Phenomena Over Common Engineering Substrates
Creators: name: Sharma, Neha
name: Kumar, Sunil
name: Thakre, G. D.
name: Ray, Anjan
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Space Science
subject: Physical Sciences not elsewhere classified
subject: Medicine
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Chemical Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: The surface free energy (SFE) of engineering substrates and the surface tension (ST) of lubricants are known to influence wetting behavior at the interface of the mating mechanical components. The influence of cyclic moieties and heteroatoms in modulating wetting behavior and consequent tribological properties like friction and wear is less well elucidated. Continuing our exploration of “triangle esters” distinguished by the introduction of three-membered heteroatom rings in otherwise commonly used lubricant structures, we demonstrate that friction and wear properties for each ester over a set four different metallic engineering substrates—aluminum, brass, phosphor bronze, and stainless steel—under low load conditions can be effectively correlated with surface properties for the coefficient of friction, and with both surface properties and substrate hardness for wear parameters. The experimentally determined regression equations are used to predict these properties for a fifth substrate, gun metal. The difference in polarity fraction between the substrate and the lubricant is found to have a surprisingly significant influence on wear properties.
Phase transition in a chain of quantum vortices
Creators: name: Bruder, C.
name: Glazman, L. I.
name: Larkin, A. I.
name: Mooij, J. E.
name: van Oudenaarden, A.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We consider interacting vortices in a quasi-one-dimensional array of Josephson junctions with small capacitance. If the charging energy of a junction is of the order of the Josephson energy, the fluctuations of the superconducting order parameter in the system are considerable, and the vortices behave as quantum particles. Their density may be tuned by an external magnetic field, and therefore one can control the commensurability of the one-dimensional vortex lattice with the lattice of Josephson junctions. We show that the interplay between the quantum nature of a vortex, and the long-range interaction between the vortices leads to the existence of a specific commensurate-incommensurate transition in a one-dimensional vortex lattice. In the commensurate phase an elementary excitation is a soliton, with energy separated from the ground state by a finite gap. This gap vanishes in the incommensurate phase. Each soliton carries a fraction of a flux quantum; the propagation of solitons leads to a finite resistance of the array. We find the dependence of the resistance activation energy on the magnetic field and parameters of the Josephson array. This energy consists of the above-mentioned gap, and also of a boundary pinning term, which is different in the commensurate and incommensurate phases. The developed theory allows us to explain quantitatively the available experimental data.
description: 14 pages, 7 eps figures
Knowledge Extraction from Biomedical Literature with Symbolic and Deep Transfer Learning Methods
Creators: name: Ramponi, Alan
Publisher: name: Università degli studi di Trento
Year: 2021

description: The available body of biomedical literature is increasing at a high pace, exceeding the ability of researchers to promptly leverage this knowledge-rich amount of information. Although the outstanding progress in natural language processing (NLP) we observed in the past few years, current technological advances in the field mainly concern newswire and web texts, and do not directly translate in good performance on highly specialized domains such as biomedicine due to linguistic variations along surface, syntax and semantic levels. Given the advances in NLP and the challenges the biomedical domain exhibits, and the explosive growth of biomedical knowledge being currently published, in this thesis we contribute to the biomedical NLP field by providing efficient means for extracting semantic relational information from biomedical literature texts. To this end, we made the following contributions towards the real-world adoption of knowledge extraction methods to support biomedicine: (i) we propose a symbolic high-precision biomedical relation extraction approach to reduce the time-consuming manual curation efforts of extracted relational evidence (Chapter 3), (ii) we conduct a thorough cross-domain study to quantify the drop in performance of deep learning methods for biomedical edge detection shedding lights on the importance of linguistic varieties in biomedicine (Chapter 4), and (iii) we propose a fast and accurate end-to-end solution for biomedical event extraction, leveraging sequential transfer learning and multi-task learning, making it a viable approach for real-world large-scale scenarios (Chapter 5). We then outline the conclusions by highlighting challenges and providing future research directions in the field.
Field induced ordering in highly frustrated antiferromagnets
Creators: name: Zhitomirsky, M. E.
name: Honecker, A.
name: Petrenko, O. A.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We predict that an external field can induce a spin order in highly frustrated classical Heisenberg magnets. We find analytically stabilization of collinear states by thermal fluctuations at a one-third of the saturation field for kagome and garnet lattices and at a half of the saturation field for pyrochlore and frustrated square lattices. This effect is studied numerically for the frustrated square-lattice antiferromagnet by Monte Carlo simulations for classical spins and by exact diagonalization for $S=1/2$. The field induced collinear states have a spin gap and produce magnetization plateaus.
description: 4 pages, new analytical proof the order by disorder by thermal fluctuations is added
Annealing by simulating the coherent Ising machine
Creators: name: Tiunov, Egor S.
name: Ulanov, Alexander E.
name: Lvovsky, A. I.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The coherent Ising machine (CIM) enables efficient sampling of low-lying energy states of the Ising Hamiltonian with all-to-all connectivity by encoding the spins in the amplitudes of pulsed modes in an optical parametric oscillator (OPO). The interaction between the pulses is realized by means of measurement-based optoelectronic feedforward which enhances the gain for lower-energy spin configurations. We present an efficient method of simulating the CIM on a classical computer that outperforms the CIM itself as well as the noisy mean-field annealer in terms of both the quality of the samples and the computational speed. It is furthermore advantageous with respect to the CIM in that it can handle Ising Hamiltonians with arbitrary real-valued node coupling strengths. These results illuminate the nature of the faster performance exhibited by the CIM and may give rise to a new class of quantum-inspired algorithms of classical annealing that can successfully compete with existing methods.
Lycopodium gnidioides L. f.
Creators: name: Callmander, Martin W.
name: Mazumdar, Jaideep
name: Jarvis, Charles E.
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Lycopodiopsida
Lycopodiales
Lycopodiaceae
Lycopodium
Lycopodium gnidioides

description: Lycopodium gnidioides L. f., Suppl. Pl.: 448. 1782.
 ≡ Phlegmariurus gnidioides (L. f.) A.R. Field & Bostock in PhytoKeys 20: 40. 2013. (Lycopodiaceae)
 Lectotypus (designated here): MAURITIUS: “nº 13. Lycopodium de l’Isle de France ”, s.d., Commerson s.n. (LINN-HS nº 1649.38 image seen; possible isolecto-: MPU [MPU1066139, MPU1066140]!).
 Notes. – A single specimen of original material seen by Linnaeus f. is preserved in LINN-HS. Thouin’s handwritten label with the number “13” is complemented by Linnaeus f.’s annotation “gnidioides”. This collection is here designated as lectotype and its identity corresponds with the current usage of the name.
Two collections originating from Thouin’s herbarium and collected by Commerson in Mauritius are extant in MPU [MPU1066139, MPU1066140]. None bears Thouin’s numbering but “ Isle de France Con” is present in Thouin’s hand. Both are very likely duplicates of original material and considered here as possible isolectotypes.
ROUX (2009) mentioned a specimen collected by Commerson from Mauritius at P [P00677322] as a possible isotype (“?iso.”) which is not considered as original material here (see above).
 Lycopodium gnidioides has been classically accepted in the genus Huperzia Bernh. (BARDÉ, 2002b; ROUX, 2009; RAKOTONDRAINIBE, 2015). A recent molecular phylogeny focusing on Madagascar showed that Malagasy Huperzia species should now be accepted in the Southern Hemisphere genus Phlegmariurus (Herter) Holub. (BAURET et al., 2018).
 Phlegmariurus gnidioides is known in continental Africa from South Africa to Malawi, São Tomé and Príncipe, the Comoro islands, Réunion, Mauritius and Madagascar (BADRÉ, 2002b).
description: Published as part of Callmander, Martin W., Mazumdar, Jaideep & Jarvis, Charles E., 2019, Typification and nomenclature of the western Indian Ocean islands ferns and lycophytes described in Linnaeus filius's Supplementum plantarum, pp. 223-234 in Candollea 74 (2) on page 232, DOI: 10.15553/c2019v742a11, http://zenodo.org/record/5684562
Study design of BI 1015550 for idiopathic pulmonary fibrosis and progressive pulmonary fibrosis: a plain language summary
Creators: name: Maher, Toby M
name: Azuma, Arata
name: Cottin, Vincent
name: Assassi, Shervin
name: Hoffmann-Vold, Anna-Maria
name: Kreuter, Michael
name: Martinez, Fernando J
name: Oldham, Justin M
name: Valenzuela, Claudia
name: Wijsenbeek, Marlies S
name: Liu, Yi
name: Wachtlin, Daniel
name: Stowasser, Susanne
name: Zoz, Donald F
name: Richeldi, Luca
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Physiology
subject: Pharmacology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Virology

description: Two ongoing clinical studies are part of a programme called FIBRONEER. The FIBRONEER studies are testing the drug BI 1015550 as a treatment for people with idiopathic pulmonary fibrosis (IPF) and people with progressive pulmonary fibrosis (PPF). IPF is a severe lung disease where scar tissue builds up in the lungs. The ‘idiopathic’ part means that doctors do not know the cause of the lung scarring. PPF is a general term to describe the worsening of lung scarring in any disease where scar tissue forms in the lungs, both from known causes such as other underlying diseases and for unknown reasons. While IPF can be considered to be a typical form of worsening lung scarring, in clinical studies, IPF and PPF are usually considered separately. In both IPF and PPF, scar tissue builds up in the lungs, making them smaller and no longer able to take in oxygen well. This leads to difficulty in breathing and getting oxygen to the tissues, making it difficult to perform daily activities and reducing the patient's quality of life. The symptoms and outcomes of PPF are often similar to IPF. BI 1015550 is a new study drug being developed to reduce scarring in the lungs in IPF and PPF. In the FIBRONEER studies, some participants are taking BI 1015550 and others are taking placebo. The placebo looks identical to BI 1015550 but does not contain any medicine. Researchers will compare the study drug to placebo to find out how well the study drug works. Participants may also take another approved medicine to treat their lung scarring. The FIBRONEER studies are investigating the effects of BI 1015550 alone and in combination with any existing medicines the participants are taking. The goal is to see whether BI 1015550 can slow down or stop a decline in lung function in people with IPF and PPF, and how well it is tolerated. Clinical Trial Registration: NCT05321069 FIBRONEER-IPF, NCT05321082 FIBRONEER-ILD (ClinicalTrials.gov) Two clinical studies are testing the drug BI 1015550 as a new treatment for people with idiopathic pulmonary fibrosis (FIBRONEER-IPF) or progressive pulmonary fibrosis (FIBRONEER ILD). The studies are taking place in up to 44 countries across North, South and Central America, Europe, Africa, Asia and Australasia.
Additional file 5: of Genome-wide and evolutionary analysis of the class III peroxidase gene family in wheat and Aegilops tauschii reveals that some members are involved in stress responses
Creators: name: Yan, Jun
name: Su, Peisen
name: Li, Wen
name: Xiao, Guilian
name: Zhao, Yan
name: Ma, Xin
name: Wang, Hongwei
name: Nevo, Eviatar
name: Kong, Lingrang
Publisher: name: figshare
Year: 2019
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Computational Biology

description: Figure S5. Quality control of GEO microarray datasets. RLE (Relative log expression) and NUSE (Normalized unscaled standard errors) values of each GEO microarray dataset. (PDF 2638 kb)
Visual Cryptography Scheme: To Secure Face, IRIS and Finger Authentication for Biometric Privacy
Creators: name: Patel, Jayeshkumar Madhubhai
Publisher: name: figshare
Year: 2019
Subjects: Applied Computer Science

description: Visual cryptography is a perfectly secure encryption mechanism, and the decryption process is done by the human visual system. The ciphertext is a printed page, and the key is a printed transparency of the same size. When the two are stacked and aligned together the plain text is revealed. Knowing just one of these two shares does not reveal any new information about the plaintext. This encryption scheme can be also considered as 2-out-of-2 secret sharing scheme (the two shares being the ciphertext and the key), and it can be generalized to a k out of n secret sharing scheme. There has been considerable interest in visual cryptography, including suggestions which improve the contrast of the resulting image or add color to the image. In this paper protecting image by decomposing it into two independent host images, such that the original image can be reconstructed only when both the images are available.
Determine The Impact of a new Generation of “Always Connected” Mobile Internet Users
Creators: name: Patel, Jayeshkumar Madhubhai
Publisher: name: figshare
Year: 2019
Subjects: Applied Computer Science

description: A new generation of “always connected” mobile Internet users that primarily access the Internet through mobiledevices[1]. This generation of hyper-mobile, hyper-connected user has materialized across age groups, and across mature and emerging markets. Equipped with unprecedented computing power as a result of a world brimming with smarter smartphones, tablets, notebooks and other affordable Web-enabled mobile devices, and powered by better network coverage, faster broadband connections, Wi-Fi networks and the explosive growth of mobile apps, user demand for ubiquitous availability of Internet is only getting stronger. Little wonder then that there is so much excitement around every new version of smartphone or tablet released.
Studies of s-channel Resonances at the CLIC Multi-TeV e+e- Collider
Creators: name: Battaglia, Marco
name: De Curtis, Stefania
name: Dominici, Daniele
name: Ferrari, Arnaud
name: Heikkinen, Jari
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Several models predict the existence of new resonances in the multi-TeV region, which should be accessible in e+e- collisions by s-channel production. In this paper, we review the phenomenology of some specific models and we present a preliminary study of the potential of the future CLIC collider for the determination of their nature and properties.
description: 8 pages, 4 figures, to appear in the Proceedings of the 5th Int. Linear Collider Workshop LCWS2000, Fermilab, October 2000
B Decays and the Heavy-Quark Expansion
Creators: name: Neubert, Matthias
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We review the theory and phenomenology of heavy-quark symmetry, exclusive weak decays of B mesons, inclusive decay rates and lifetimes of b hadrons.
description: 55 pages, 13 figures; to appear in the Second Edition of: Heavy Flavours, edited by A.J. Buras and M. Lindner (World Scientific, Singapore)
THE AUTHOR'S PROGRAM "MUSICAL PETERSBURG", AIMED AT THE MORAL AND PATRIOTIC EDUCATION OF PRESCHOOLERS WITH SPEECH AND HEARING IMPAIRMENT
Creators: name: I.V. Merchik
Publisher: name: Zenodo
Year: 2024

description: The article presents the author's program of a musical director for pupils of senior preschool age with speech and hearing impairments, which is based on the idea of patriotic education through introducing children to the history of St. Petersburg, to art as the highest spiritual value.
Cascaded Recurrent Neural Networks for Hyperspectral Image Classification
Creators: name: Hang, Renlong
name: Liu, Qingshan
name: Hong, Danfeng
name: Ghamisi, Pedram
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: By considering the spectral signature as a sequence, recurrent neural networks (RNNs) have been successfully used to learn discriminative features from hyperspectral images (HSIs) recently. However, most of these models only input the whole spectral bands into RNNs directly, which may not fully explore the specific properties of HSIs. In this paper, we propose a cascaded RNN model using gated recurrent units (GRUs) to explore the redundant and complementary information of HSIs. It mainly consists of two RNN layers. The first RNN layer is used to eliminate redundant information between adjacent spectral bands, while the second RNN layer aims to learn the complementary information from non-adjacent spectral bands. To improve the discriminative ability of the learned features, we design two strategies for the proposed model. Besides, considering the rich spatial information contained in HSIs, we further extend the proposed model to its spectral-spatial counterpart by incorporating some convolutional layers. To test the effectiveness of our proposed models, we conduct experiments on two widely used HSIs. The experimental results show that our proposed models can achieve better results than the compared models.
Impurity-induced dephasing of Andreev states
Creators: name: Lundin, N. I.
name: Galperin, Y. M.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: A study is presented concerning the influence of flicker noise in the junction transparency on coherent transport in Andreev states. The amount of dephasing is estimated for a microwave-activated quantum interferometer. Possibilities of experimentally investigating the coupling between a superconducting quantum point contact and its electromagnetic environment are discussed.
description: 8 pages, 4 figures
Enhanced Minijet Production in $A-A$ Collisions from Gluons with Large Transverse Momenta
Creators: name: Pirner, H. -J.
name: Yuan, Feng
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We find supersaturation for the intrinsic gluon distribution of nuclei, i.e. the low $x$ unintegrated nuclear gluon distribution peaks at intermediate transverse momenta $k_t=Q_s$ and vanishes at zero $k_t$. Taking into account the intrinsic transverse momenta of the gluons and the saturation scale $p_s$ of the produced gluons, we calculate the minijet cross section arising from gluon gluon scattering for RHIC energies. For central collisions at $\sqrt{s}=200GeV$ the saturation scale $p_s \approx 1.4$ GeV is larger due to intrinsic $k_t$ effects and increases with energy. Our theoretical results on charged particle multiplicity agree very well with the recent experimental data from RHIC.
description: revised version, small changes for publication
Screened Perturbation Theory
Creators: name: Karsch, Frithjof
name: Patkos, Andras
name: Petreczky, Peter
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: A new perturbative scheme is proposed for the evaluation of the free energy density of field theories at finite temperature. The screened loop expansion takes into account exactly the phenomenon of screening in thermal propagators. The approach is tested in the N-component scalar field theory at 2-loop level and also at 3-loop in the large N limit. The perturbative series generated by the screened loop expansion shows much better numerical convergence than previous expansions generated in powers of the quartic coupling.
description: 10 pages, LaTex, 2 figures
Lp-error Bounds Of Two And Three-point Quadrature Rules For Riemann-stieltjes Integrals
Creators: name: Alomari, M. W.
name: Guessab, A.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Classical Analysis and ODEs (math.CA)
subject: FOS: Mathematics
subject: 41A55, 65D30, 65D32

description: In this work, Lp-error estimates of general two and three point quadrature rules for Riemann-Stieltjes integrals are give n. The presented proofs depend on new triangle type inequalities of Riemann-Stieltjes integrals
description: 13 pages
Additional file 1 of Incorporation of a truncated form of flagellin (TFlg) into porcine circovirus type 2 virus-like particles enhances immune responses in mice
Creators: name: Liu, Xiangyu
name: Liu, Yangkun
name: Zhang, Yuanyuan
name: Zhang, Fan
name: Du, Enqi
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Additional file 1. The gene sequence of the PCV2 cap protein.
Anomalous Diffusion in Aperiodic Environments
Creators: name: Igloi, F.
name: Turban, L.
name: Rieger, H.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We study the Brownian motion of a classical particle in one-dimensional inhomogeneous environments where the transition probabilities follow quasiperiodic or aperiodic distributions. Exploiting an exact correspondence with the transverse-field Ising model with inhomogeneous couplings we obtain many new analytical results for the random walk problem. In the absence of global bias the qualitative behavior of the diffusive motion of the particle and the corresponding persistence probability strongly depend on the fluctuation properties of the environment. In environments with bounded fluctuations the particle shows normal diffusive motion and the diffusion constant is simply related to the persistence probability. On the other hand in a medium with unbounded fluctuations the diffusion is ultra-slow, the displacement of the particle grows on logarithmic time scales. For the borderline situation with marginal fluctuations both the diffusion exponent and the persistence exponent are continuously varying functions of the aperiodicity. Extensions of the results to disordered media and to higher dimensions are also discussed.
description: 11 pages, RevTex
Additional file 1 of Antibiotic resistance gene sharing networks and the effect of dietary nutritional content on the canine and feline gut resistome
Creators: name: Kim, Younjung
name: Leung, Marcus
name: Kwok, Wendy
name: FourniÃ©, Guillaume
name: Li, Jun
name: Lee, Patrick
name: Pfeiffer, Dirk
Publisher: name: figshare
Year: 2020
Subjects: subject: Space Science
subject: Medicine
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Computational Biology

description: Additional file 1:Table S1. Summary statistics of de novo assembly.