cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Rumex acetosella var. perpusillus Briq.
Creators: name: Jeanmonod, Daniel
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Caryophyllales
Polygonaceae
Rumex
Rumex acetosella
Rumex acetosella var. perpusillus briq.

description: Rumex acetosella var. perpusillus Briq., Prodr. Fl. Corse 1: 444. 1910.
Lectotypus (hic designatus): FRANCE. Corse: Monte Cinto, 2200 m, 17.VII.1900, E. Burnat, Briquet & Cavillier 103 (G-BU [G00830053]!).
= Rumex acetosella subsp. pyrenaicus (Lapeyr.) Akeroyd
Note. – Un syntype de R. acetosella var. perpusillus n’a pas été retrouvé: Rocailles au-dessus des bergeries de Grotello sur la rive droite de la Haute Restonica, 1600 m, 3.VIII.1906, E. Burnat, Briquet, Saint-Yves, Cavillier & Abrezol (G-BU).
description: Published as part of Jeanmonod, Daniel, 2018, Typification des noms de taxons corses de l'herbier Burnat (G-BU), pp. 61-74 in Candollea 73 (1) on page 69, DOI: 10.15553/c2018v731a6, http://zenodo.org/record/5722164
Eckart ro-vibrational Hamiltonians via the gateway Hamilton operator: theory and practice
Creators: name: Szalay, Viktor
Publisher: name: arXiv
Year: 2017
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: Recently, a general expression for Eckart-frame Hamilton operators has been obtained by the gateway Hamiltonian method ({\it J. Chem. Phys.} {\bf 142}, 174107 (2015); {\it ibid.} {\bf 143}, 064104 (2015)). The kinetic energy operator in this general Hamiltonian is nearly identical with that of the Eckart-Watson operator even when curvilinear vibrational coordinates are employed. Its different realizations correspond to different methods of calculating Eckart displacements. There are at least two different methods for calculating such displacements: rotation and projection. In this communication the application of Eckart Hamiltonian operators constructed by rotation and projection, respectively, is numerically demonstrated in calculating vibrational energy levels. The numerical examples confirm that there is no need for rotation to construct an Eckart ro-vibrational Hamiltonian. The application of the gateway method is advantageous even when rotation is used, since it obviates the need for differentiation of the matrix rotating into the Eckart frame. Simple geometrical arguments explain that there are infinitely many different methods for calculating Eckart displacements. The geometrical picture also suggests that a unique Eckart displacement vector may be defined as the shortest (mass-weighted) Eckart displacement vector among Eckart displacement vectors corresponding to configurations related by rotation. Its length, as shown analytically and demonstrated by way of numerical examples, is equal to or less than that of the Eckart displacement vector one can obtain by rotation to the Eckart frame.
Additional file 2: Table S2. of Neonatal intensive care parent satisfaction: a multicenter study translating and validating the Italian EMPATHIC-N questionnaire
Creators: name: DallâOglio, Immacolata
name: Fiori, Martina
name: Tiozzo, Emanuela
name: Mascolo, Rachele
name: Portanova, Anna
name: Gawronski, Orsola
name: Ragni, Angela
name: Amadio, Patrizia
name: Cocchieri, Antonello
name: Fida, Roberta
name: Alvaro, Rosaria
name: Rocco, Gennaro
name: Latour, Jos
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology

description: Correlations among factors (PDF 86Â kb)
Predictions for Diffractive $ϕ$ Meson Production Using an AdS/QCD Light-front Wavefunction
Creators: name: Ahmady, Mohammad
name: Sandapen, Ruben
name: Sharma, Neetika
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We compute the rate for diffractive $ϕ$ electro-production using the Color Glass Condensate dipole model. The model parameters are obtained from fits to the most recent combined HERA data on inclusive deep inelastic scattering. As for the $ϕ$ meson, we use an AdS/QCD holographic light front wavefunction. Our predictions are compared to the available data collected at the HERA collider.
description: 4 pages, 2 figures, contribution to the proceedings of the DIFFRACTION 2016: International Workshop on Diffraction in High-Energy Physics, 2-8 September 2016, Santa Tecla di Acireale, Italy
Additional file 1 of Antiviral effect of baicalin on Marek’s disease virus in CEF cells
Creators: name: Yang, Fan
name: Feng, Chun
name: Yao, Yongxiu
name: Qin, Aijian
name: Shao, Hongxia
name: Qian, Kun
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Additional file 1 Figure S1. The full-length blot images of Fig.2d in the manuscript.
Rumex scutatus var. insularis Briq.
Creators: name: Jeanmonod, Daniel
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Caryophyllales
Polygonaceae
Rumex
Rumex scutatus
Rumex scutatus var. insularis briq.

description: Rumex scutatus var. insularis Briq., Prodr. Fl. Corse 1: 446. 1910.
Holotypus: FRANCE. Corse: entre les Pointes de Monte et de Bocca d’Oro, au-dessus du Col de Verde, 1800-1950 m, 20.VII.1906, E. Burnat, J. Briquet, Saint-Yves, Cavillier & Abrezol s.n. (G-BU [G00198805]!).
description: Published as part of Jeanmonod, Daniel, 2018, Typification des noms de taxons corses de l'herbier Burnat (G-BU), pp. 61-74 in Candollea 73 (1) on page 69, DOI: 10.15553/c2018v731a6, http://zenodo.org/record/5722164
Additional file 1 of Application prospects of the 2BS cell-adapted China fixed rabies virus vaccine strain 2aG4-B40
Creators: name: Xu, Ying
name: Weng, Lin
name: Wang, Xuan
name: Li, Ming
name: Guo, Wanping
name: Liu, Yiqing
name: Li, Xiang
name: Wang, Zhenping
name: Liu, Xinyu
name: Xu, Shengnan
name: He, Feide
name: Hou, Qianqian
name: Li, Tengzhou
name: Du, Wenke
name: Zhang, Yabo
name: Chang, Shumin
name: Zhang, Liwen
name: Zhang, Yuntao
Publisher: name: figshare
Year: 2024
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Supplementary Material 1
Additional file 4: Figure S4. of The rice zebra3 (z3) mutation disrupts citrate distribution and produces transverse dark-green/green variegation in mature leaves
Creators: name: Kim, Suk-Hwan
name: Choon-Tak Kwon
name: Giha Song
name: Hee-Jong Koh
name: Gynheung An
name: Nam-Chon Paek
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Confirmation of the overexpression of Z3 by the CaMV 35S promoter in six independent complementation lines. a Genomic PCR analysis for confirmation of rice transformation. The genomic region between the vector and the Z3 transgene was amplified in the transformed lines. All six independent lines were confirmed to be transformed. Primer information is listed in Additional file 8: Table S1. EV, empty vector; Control, vector used for transformation without the Z3 gene. b The overexpression of Z3 by the CaMV 35S promoter in six independent complementation lines. Primers were designed to amplify the transgene mRNA, and are listed in Additional file 8: Table S1. The GAPDH mRNA level was measured as a loading control. (PDF 647 kb)
ICPC'22 replication package
Creators: name: Miedema, Daphne
name: Fletcher, George
name: Aivaloglou, Efthimia
Publisher: name: figshare
Year: 2022
Subjects: subject: 80604 Database Management
subject: FOS: Computer and information sciences
subject: 80308 Programming Languages

description: ICPC'22 replication package for - So many brackets! An analysis of how SQL learners (mis)manage complexity during query formulation

In this work we investigate the problem of complexity in SQL query formulation. The complexity of SQL does not just result in syntax and semantic errors, but can also hinder comprehension for novices during query formulation. Our research question is: How do students deal with complexity during query formulation? To analyze SQL complexity throughout the query formulation process, we approach complexity in our dataset from four angles: correctness, execution order, edit distance and query intricacy. We examine the intermediate and final queries that 104 students submitted to the database as solutions for six exercises, grouping by participant and exercise number. This series of attempts gives us insight into how students approach query building and how they manage and mismanage complexity during query formulation.
For more information on the analysis, read the README included in the replication package.
Combined effect of doping and temperature on the anisotropy of low-energy plasmons in monolayer graphene
Creators: name: Gumbs, Godfrey
name: Balassis, Antonios
name: Silkin, V. M.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We compare the two-dimensional (2D) plasmon dispersion relations for monolayer graphene when the sample is doped with carriers in the conduction band and the temperature $T$ is zero with the case when the temperature is finite and there is no doping. Additionally, we have obtained the plasmon excitations when there is doping at finite temperature. The results were obtained in the random-phase approximation which employs energy electronic bands calculated using ab initio density functional theory. We found that in the undoped case the finite temperature results in appearance in the low-energy region of a 2D plasmon which is absent for the $T=0$ case. Its energy is gradually increased with increasing $T$. It is accompanied by expansion in the momentum range where this mode is observed as well. The 2D plasmon dispersion in the $Γ$M direction may differ in substantial ways from that along the $Γ$K direction at sufficiently high temperature and doping concentrations. Moreover, at temperatures exceeding $\approx300$ meV a second mode emerges along the $Γ$K direction at lower energies like it occurs at a doping level exceeding $\approx 300$ meV. Once the temperature exceeds $\approx 0.75$ eV this mode ceases to exit whereas the 2D plasmon exists as a well-defined collective excitation up to $T=1.5$ eV, a maximal temperature investigated in this work.
description: 11 pages, 8 figures
Enabling AutoML for Zero-Touch Network Security: Use-Case Driven Analysis
Creators: name: Yang, Li
name: Rajab, Mirna El
name: Shami, Abdallah
name: Muhaidat, Sami
Publisher: name: arXiv
Year: 2025
Subjects: subject: Cryptography and Security (cs.CR)
subject: Machine Learning (cs.LG)
subject: Networking and Internet Architecture (cs.NI)
subject: FOS: Computer and information sciences
subject: I.2.1; I.2.6; C.2.0
subject: 68T01, 90C31

description: Zero-Touch Networks (ZTNs) represent a state-of-the-art paradigm shift towards fully automated and intelligent network management, enabling the automation and intelligence required to manage the complexity, scale, and dynamic nature of next-generation (6G) networks. ZTNs leverage Artificial Intelligence (AI) and Machine Learning (ML) to enhance operational efficiency, support intelligent decision-making, and ensure effective resource allocation. However, the implementation of ZTNs is subject to security challenges that need to be resolved to achieve their full potential. In particular, two critical challenges arise: the need for human expertise in developing AI/ML-based security mechanisms, and the threat of adversarial attacks targeting AI/ML models. In this survey paper, we provide a comprehensive review of current security issues in ZTNs, emphasizing the need for advanced AI/ML-based security mechanisms that require minimal human intervention and protect AI/ML models themselves. Furthermore, we explore the potential of Automated ML (AutoML) technologies in developing robust security solutions for ZTNs. Through case studies, we illustrate practical approaches to securing ZTNs against both conventional and AI/ML-specific threats, including the development of autonomous intrusion detection systems and strategies to combat Adversarial ML (AML) attacks. The paper concludes with a discussion of the future research directions for the development of ZTN security approaches.
description: Published in IEEE Transactions on Network and Service Management (TNSM); Code is available at Github link: https://github.com/Western-OC2-Lab/AutoML-and-Adversarial-Attack-Defense-for-Zero-Touch-Network-Security
Additional file 1 of Antiplatelet therapy to prevent ischemic events in giant cell arteritis: protocol for a systematic review and meta-analysis
Creators: name: Makhzoum, Jean-Paul
name: Baati, Youssef
name: Tanase, Octavian
name: Mendel, Arielle
name: Pagnoux, Christian
name: Ross, Carolyn
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Cell Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Mathematical Sciences not elsewhere classified
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Fig. S1. Cochrane Central Register of Controlled Trials in the Cochrane Library (CENTRAL) Search Strategy. Fig. S2. Embase Search Strategy. Fig. S3. Study Registries Search Strategy. Fig. S4. Conference Papers Search Strategy. Fig. S5. Citation Tool Search Strategy.
Sanguisorba minor var. insularis Briq.
Creators: name: Jeanmonod, Daniel
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Rosales
Rosaceae
Sanguisorba
Sanguisorba minor
Sanguisorba minor var. insularis briq.

description: Sanguisorba minor var. insularis Briq., Prodr. Fl. Corse 2(1): 208. 1913.
Lectotypus (hic designatus): FRANCE. Corse: env. de Vivario, près du Col de Tripoli (Forêt de Cervello), 1500 m, 18.VII.1906, E. Burnat, Briquet, Saint-Yves, Cavillier & Abrezol 1536 (G-BU [G00830081]!). Syntypi: (G-BU [G00830077, G00830078, G00830079, G00830080, G00830082, G00830083]!).
description: Published as part of Jeanmonod, Daniel, 2018, Typification des noms de taxons corses de l'herbier Burnat (G-BU), pp. 61-74 in Candollea 73 (1) on page 71, DOI: 10.15553/c2018v731a6, http://zenodo.org/record/5722164
Additional file 2 of MiR-135a-5p suppresses trophoblast proliferative, migratory, invasive, and angiogenic activity in the context of unexplained spontaneous abortion
Creators: name: Lu, Yebin
name: Zhang, Xiaoli
name: Li, Xueyu
name: Deng, Lingjie
name: Wei, Changqiang
name: Yang, Dongmei
name: Tan, Xuemei
name: Pan, Weicheng
name: Pang, Lihong
Publisher: name: figshare
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Science Policy

description: Additional file 2.
Dynamics of exciton magnetic polarons in CdMnSe/CdMgSe quantum wells: the effect of self-localization
Creators: name: Akimov, I. A.
name: Godde, T.
name: Kavokin, K. V.
name: Yakovlev, D. R.
name: Reshina, I. I.
name: Sedova, I. V.
name: Sorokin, S. V.
name: Ivanov, S. V.
name: Kusrayev, Yu. G.
name: Bayer, M.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We study the exciton magnetic polaron (EMP) formation in (Cd,Mn)Se/(Cd,Mg)Se diluted-magnetic-semiconductor quantum wells using time-resolved photoluminescence (PL). The magnetic field and temperature dependencies of this dynamics allow us to separate the non-magnetic and magnetic contributions to the exciton localization. We deduce the EMP energy of 14 meV, which is in agreement with time-integrated measurements based on selective excitation and the magnetic field dependence of the PL circular polarization degree. The polaron formation time of 500 ps is significantly longer than the corresponding values reported earlier. We propose that this behavior is related to strong self-localization of the EMP, accompanied with a squeezing of the heavy-hole envelope wavefunction. This conclusion is also supported by the decrease of the exciton lifetime from 600 ps to 200 - 400 ps with increasing magnetic field and temperature.
description: 9 pages, 10 figures
ICPC'22 replication package for - So many brackets! An analysis of how SQL learners (mis)manage complexity during query formulation
Creators: name: Miedema, Daphne
name: Fletcher, George
name: Aivaloglou, Efthimia
Publisher: name: figshare
Year: 2022
Subjects: subject: 80604 Database Management
subject: FOS: Computer and information sciences
subject: 80308 Programming Languages

description: In this work we investigate the problem of complexity in SQL query formulation. The complexity of SQL does not just result in syntax and semantic errors, but can also hinder comprehension for novices during query formulation. Our research question is: How do students deal with complexity during query formulation? To analyze SQL complexity throughout the query formulation process, we approach complexity in our dataset from four angles: correctness, execution order, edit distance and query intricacy. We examine the intermediate and final queries that 104 students submitted to the database as solutions for six exercises, grouping by participant and exercise number. This series of attempts gives us insight into how students approach query building and how they manage and mismanage complexity during query formulation.
For more information on the analysis, read the README included in the replication package.
Additional file 1: Table S1. of Neonatal intensive care parent satisfaction: a multicenter study translating and validating the Italian EMPATHIC-N questionnaire
Creators: name: DallâOglio, Immacolata
name: Fiori, Martina
name: Tiozzo, Emanuela
name: Mascolo, Rachele
name: Portanova, Anna
name: Gawronski, Orsola
name: Ragni, Angela
name: Amadio, Patrizia
name: Cocchieri, Antonello
name: Fida, Roberta
name: Alvaro, Rosaria
name: Rocco, Gennaro
name: Latour, Jos
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Descriptive analysis levels of the 57 items and correlation with the general satisfaction of physicians and nurses. (PDF 145Â kb)
Sagina pilifera var. laxa Briq
Creators: name: Jeanmonod, Daniel
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Caryophyllales
Caryophyllaceae
Sagina
Sagina pilifera
Sagina pilifera var. laxa briq

description: Sagina pilifera var. laxa Briq., Prodr. Fl. Corse 1: 523. 1910.
Lectotypus (hic designatus): FRANCE. Corse: entre la Restonica et la bergerie de Timozzo, 1200-1500 m, 20.VII.1900, E. Burnat, Briquet & Cavillier 223 (G-BU [G00182108]!). Syntypi: (G-BU [G00182109, G00182110, G00182111, G00182112, G00182113, G00182114]!).
= Sagina pilifera (DC.) Fenzl
description: Published as part of Jeanmonod, Daniel, 2018, Typification des noms de taxons corses de l'herbier Burnat (G-BU), pp. 61-74 in Candollea 73 (1) on page 69, DOI: 10.15553/c2018v731a6, http://zenodo.org/record/5722164
Neural correlates of racial bias in pain perception
Creators: name: Goharzad, Azaadeh
name: Mende-Siedlecki, Peter
name: Drain, Alexis
name: Reyes, Patrick Gilbert
name: Lin, Jingrun
name: Tuerxuntuoheti, Aizihaer
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Medicine and Health Sciences
subject: Social and Behavioral Sciences
subject: health inequity
subject: pain
subject: pain perception
subject: racial bias

description: We examine neural bases of racial bias in pain perception and treatment. For further details, see preregistration document.
Saxifraga pedemontana var. incudinensis Briq.
Creators: name: Jeanmonod, Daniel
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Saxifragales
Saxifragaceae
Saxifraga
Saxifraga pedemontana
Saxifraga pedemontana var. incudinensis briq.

description: Saxifraga pedemontana var. incudinensis Briq., Prodr. Fl. Corse 2(1): 157. 1913.
Lectotypus (hic designatus): FRANCE. Corse: Mont Incudine, 2000 m, 18.VII.1906, E. Burnat, Briquet, Saint-Yves, Cavillier & Abrezol 1898 (G-BU [G00830084]!; isolecto-: G [G00429820]!).
description: Published as part of Jeanmonod, Daniel, 2018, Typification des noms de taxons corses de l'herbier Burnat (G-BU), pp. 61-74 in Candollea 73 (1) on page 71, DOI: 10.15553/c2018v731a6, http://zenodo.org/record/5722164
Additional file 1 of Age and sex differences in the effects of short- and long-term exposure to air pollution on endothelial dysfunction
Creators: name: Zhang, Haoyu
name: Yang, Jing
name: Zhang, Yinghua
name: Xiao, Keling
name: Wang, Yang
name: Si, Jin
name: Li, Yan
name: Sun, Lijie
name: Sun, Jinghao
name: Yi, Ming
name: Chu, Xi
name: Li, Jing
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Science Policy

description: Supplementary Material 1
Extending Urban Multi-Lane Spatial Logic to Formalise Road Junction Rules
Creators: name: Schwammberger, Maike
name: Vaz Alves, Gleifer
Publisher: name: Open Publishing Association
Year: 2021

description: During the design of autonomous vehicles (AVs), several stages should include a verification process to guarantee that the AV is driving safely on the roads. One of these stages is to assure the AVs abide by the road traffic rules. To include road traffic rules in the design of an AV, a precise and unambiguous formalisation of these rules is needed. However, only recently this has been pointed out as an issue for the design of AVs and the few works on this only capture the temporal aspects of the rules, leaving behind the spatial aspects. Here, we extend the spatial traffic logic, Urban Multi-lane Spatial Logic, to formalise a subset of the UK road junction rules, where both temporal and spatial aspects of the rules are captured. Our approach has an abstraction level for urban road junctions that could easily promote the formalisation of the whole set of road junction rules and we exemplarily formalise three of the UK road junction rules. Once we have the whole set formalised, we will model, implement, and formally verify the behaviour of an AV against road traffic rules so that guidelines for the creation of a Digital Highway Code for AVs can be established.
Deep Learning Models of the Retinal Response to Natural Scenes
Creators: name: McIntosh, Lane T.
name: Maheswaranathan, Niru
name: Nayebi, Aran
name: Ganguli, Surya
name: Baccus, Stephen A.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Neurons and Cognition (q-bio.NC)
subject: Machine Learning (stat.ML)
subject: FOS: Biological sciences
subject: FOS: Computer and information sciences

description: A central challenge in neuroscience is to understand neural computations and circuit mechanisms that underlie the encoding of ethologically relevant, natural stimuli. In multilayered neural circuits, nonlinear processes such as synaptic transmission and spiking dynamics present a significant obstacle to the creation of accurate computational models of responses to natural stimuli. Here we demonstrate that deep convolutional neural networks (CNNs) capture retinal responses to natural scenes nearly to within the variability of a cell's response, and are markedly more accurate than linear-nonlinear (LN) models and Generalized Linear Models (GLMs). Moreover, we find two additional surprising properties of CNNs: they are less susceptible to overfitting than their LN counterparts when trained on small amounts of data, and generalize better when tested on stimuli drawn from a different distribution (e.g. between natural scenes and white noise). Examination of trained CNNs reveals several properties. First, a richer set of feature maps is necessary for predicting the responses to natural scenes compared to white noise. Second, temporally precise responses to slowly varying inputs originate from feedforward inhibition, similar to known retinal mechanisms. Third, the injection of latent noise sources in intermediate layers enables our model to capture the sub-Poisson spiking variability observed in retinal ganglion cells. Fourth, augmenting our CNNs with recurrent lateral connections enables them to capture contrast adaptation as an emergent property of accurately describing retinal responses to natural scenes. These methods can be readily generalized to other sensory modalities and stimulus ensembles. Overall, this work demonstrates that CNNs not only accurately capture sensory circuit responses to natural scenes, but also yield information about the circuit's internal structure and function.
description: L.T.M. and N.M. contributed equally to this work. Presented at NIPS 2016
A Self-Consistent Model for a Full Cycle of Recurrent Novae -- Wind Mass Loss Rate and X-Ray Luminosity
Creators: name: Kato, Mariko
name: Saio, Hideyuki
name: Hachisu, Izumi
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: An unexpectedly slow evolution in the pre-optical-maximum phase was suggested in the very short recurrence period nova M31N 2008-12a. To obtain reasonable nova light curves we have improved our calculation method by consistently combining optically thick wind solutions of hydrogen-rich envelopes with white dwarf (WD) structures calculated by a Henyey-type evolution code. The wind mass loss rate is properly determined with high accuracy. We have calculated light curve models for 1.2 and 1.38 M_sun WDs with mass accretion rates corresponding to recurrence periods of 10 and 1 yr, respectively. The outburst lasts 590/29 days in which the pre-optical-maximum phase is 82/16 days, for 1.2/1.38 M_sun, respectively. Optically thick winds start at the end of X-ray flash and cease at the beginning of supersoft X-ray phase. We also present supersoft X-ray light curves including a prompt X-ray flash and later supersoft X-ray phase.
description: 10 pages, 12 figures, to appear in the Astrophysical Journal
Effects of dietary alpha-ketoglutarate on bacteria profiles in the faeces of lactating sows and their suckling piglets
Creators: name: Jiang, Qian
name: Adebowale, Tolulope Oluwadamilare
name: Tian, Junquan
name: Yin, Yulong
name: Yao, Kang
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: The aim of the study was to investigate the effects of dietary alpha-ketoglutarate (AKG) on the faecal bacteria composition of suckling piglets after supplementation of AKG to the diet of lactating sows. After farrowing, the sows were assigned to either a normal lactation diet (control group, n = 12) or a diet supplemented with 0.25% AKG (AKG group, n = 12) based on body weight (BW) and parity. During the 21-d suckling period, BW and diarrhoea occurrences of piglets were recorded daily, while faeces were sampled weekly from sows and piglets. The levels of pH, ammonia, short-chain fatty acids (SCFA) and lactate in the faeces of piglets were determined. In particular, bacteria profiles in faeces of sows and their suckling piglets were examined by Illumina sequencing. The results showed that the AKG diet altered the faecal bacteria composition in sows during the 21-d lactation period, leading to increases (p < 0.05) in the abundances of genera Prevotella, Lactobacillus, Bacteroides and Methanobrevibacter, but decreases (p < 0.05) in the abundances of genera Oscillospira and Dorea. AKG supplement to the sows during lactation indirectly enhanced (p < 0.05) bacterial richness and SCFA levels (especially, acetate) in the faeces of piglets during the 21-d suckling period. It is suggested that maternal AKG supplementation alters the composition of faecal bacteria in the sows, and increases the faecal bacteria richness and acetate levels in the piglets, which might be associated with an enhanced growth performance of piglets.
Saxifraga pedemontana var. pulvinaris Briq.
Creators: name: Jeanmonod, Daniel
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Saxifragales
Saxifragaceae
Saxifraga
Saxifraga pedemontana
Saxifraga pedemontana var. pulvinaris briq.

description: Saxifraga pedemontana var. pulvinaris Briq. in Annuaire Conserv. Jard. Bot. Genève 5: 102. 1901.
Holotypus: FRANCE. Corse: Monte Renoso, 2300- 2350 m, 24.VII.1900, E. Burnat, Briquet & Cavillier 408 (G-BU [G00830089]!).
description: Published as part of Jeanmonod, Daniel, 2018, Typification des noms de taxons corses de l'herbier Burnat (G-BU), pp. 61-74 in Candollea 73 (1) on page 71, DOI: 10.15553/c2018v731a6, http://zenodo.org/record/5722164
title: Decoded city: Reading the Historical Peninsula of Istanbul  under the shadow of different empires with multi-methods  and approaches
Creators: name: Kubat, Ayse Sema
name: Kurtulus, Irem
name: Kucuk Caliskan, Ezgi
Publisher: name: Conference Proceedings XXIX International Seminar on Urban Form ISUF 2022 Urban Redevelopment and Revitalisation A Multidisciplinary Perspective/Lodz University of Technology Press
Year: 2023
Subjects: Historical Peninsula, Configuration, Topkapi Palace, Istanbul.

description: This research aims to show the complexity that lies beneath the urban layout of the historical core in Istanbul, which has been in the spotlight over the centuries due to its strategic location and historical significance. The city was the capital of the Byzantine and Ottoman Empires throughout its history. In each period, the city was destroyed and the next generation simply rebuilt on the ruins of the previous one according to their everyday practices and own culture.
This study examines the changes by using space syntax and Muratorian methods and also identifying the morphological regions of the city in terms of Conzenian tradition. The methodology is built in different scales: macro, meso and micro. Within these sections, morphological regionalization, which expresses the urban areas that have separate integrity from the other areas surrounding them in terms of form, is a method to figure out the relation among the main elements of urban form. In the research, the urban landscapes are read in multiple scales: the whole area, various ordered morphological regions as well as the building fabric and prominent buildings. Firstly, the expansion of the city in time and the urban components of each period as well as their differences were presented. Afterward, the spatial transformations of the area were defined by using spatial analysis. Secondly, Archaeological Park is analyzed. Lastly, the research describes how cultural changes reflected the palaces’ layouts in each era. To do so, j-graph analysis was used to investigate Byzantium and Ottoman Palaces. Each generation produced knowledge; those were adapted to tradition and reflected their own spatial culture. Three different morphological methods were adapted to decode the historical core of Istanbul. The study provides a better grasp of the transition of the area and traces culture in the sphere by means of internalist, normative and cognitive methods.
Saxifraga pedemontana var. subpedemontana Briq.
Creators: name: Jeanmonod, Daniel
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Saxifragales
Saxifragaceae
Saxifraga
Saxifraga pedemontana
Saxifraga pedemontana var. subpedemontana briq.

description: Saxifraga pedemontana var. subpedemontana Briq., Prodr. Fl. Corse 2(1): 154. 1913.
Lectotypus (hic designatus): FRANCE. Corse: Monte d’Oro, versant E, 2000 m, 11.VI.1904, E. Burnat, Briquet, Cavillier & Abrezol 303 (G-BU [G00830086]!).
= Saxifraga pedemontana subsp. cervicornis (Viv.) Engl.
description: Published as part of Jeanmonod, Daniel, 2018, Typification des noms de taxons corses de l'herbier Burnat (G-BU), pp. 61-74 in Candollea 73 (1) on page 71, DOI: 10.15553/c2018v731a6, http://zenodo.org/record/5722164
Additional file 3: Figure S3. of The rice zebra3 (z3) mutation disrupts citrate distribution and produces transverse dark-green/green variegation in mature leaves
Creators: name: Kim, Suk-Hwan
name: Choon-Tak Kwon
name: Giha Song
name: Hee-Jong Koh
name: Gynheung An
name: Nam-Chon Paek
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Amino acid alignment of Z3 homologs in higher plants. The amino acid sequences of Z3 homologs in higher plants were acquired from NCBI ( http://www.ncbi.nlm.nih.gov /), and the amino acid alignment was obtained using the Clustal Omega EMBL-EBI ( https://www.ebi.ac.uk/Tools/msa/clustalo/ ) and BoxShade 3.21 Server ( https://www.ch.embnet.org/software/BOX_form.html ). O. brachyantha, Z. mays_1, Z. mays_2, H. vulgare, S. bicolor, S. tuberosum, G. max, and A. thaliana have 99, 96, 95, 87, 72, 65, 64, and 62% sequence similarity to Z3, respectively. The mutated residue (S542P in z3) is indicated by a red arrowhead. O. sativa_ZEBRA3 (Oryza sativa ZEBRA3, LOC_Os03g05390, NP_001048962.1); O. brachyantha (Oryza brachyantha, XP_006649400.1); Z. mays_1 (Zea mays, NP_001151517.1); Z. mays_2 (Zea mays, ACG43196.1); H. vulgare (Hordeum vulgare, BAK05230.1); S. bicolor (Sorghum bicolor, XP_002467148.1); S. tuberosum (Solanum tuberosum, XP_006363328.1); G. max (Glycine max, XP_003533988.1); A. thaliana (Arabidopsis thaliana, NP_171728.2). (PDF 2499 kb)
title: ADCO, Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Cart. 32 (G 136), 745 folios, f. 1425
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire

description: Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Archives départementales de la Côte-d'Or, Cart. 32 (G 136), 745 folios, f. 1425, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Archives départementales de la Côte-d'Or, Cart. 32 (G 136), 745 folios, f. 1425, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
Toward a compare and contrast framework for COVID-19 contact tracing mobile applications: a look at usability
Creators: name: STORNI, CRISTIANO
name: Tsvyatkova, Damyanka
name: RICHARDSON, ITA
name: BUCKLEY, JIM
name: Abbas, Manzar
name: BEECHAM, SARAH
name: Chochlov, Muslim
name: FITZGERALD, BRIAN
name: GLYNN, LIAM
name: JOHNSON, KEVIN
name: Laffey, John
name: McNicholas, Bairbre
name: Nuseibeh, Bashar
name: O’Connell, James
name: O’Keeffe, Derek
name: O'Keeffe, Ian R.
name: O’Callaghan, Mike
name: RAZZAQ, ABDUL
name: Rekanar, Kaavya
name: Simpkin, Andrew
name: Walsh, Jane
name: WELSH, THOMAS
Publisher: name: University of Limerick
Year: 2024
Subjects: classificationCode: 4612
subject: Software engineering
classificationCode: 42
subject: Health sciences
subject: FOS: Health sciences

description: This paper reports on the progress in the project COVIGILANT, which is aimed at developing an evaluation taxonomy for Contact Tracing Applications (CTAs) for COVID-19. Specifically, this article describes the development of Usability, one pillar of the COVIGILANT taxonomy, discussing the classification and decision-making processes, and the initial model validation. The validation process was undertaken in two stages. First, we validated how the Usability pillar could be used to evaluate the Irish Health Services Executive (HSE) COVID-19 CTA. While this supported many of the attributes that we had within the Usability pillar, it also identified issues. We made amendments based on these, and undertook a second study, this time evaluating 4 CTAs used in other countries. This has led to the completion of the Usability pillar, which can now be used to evaluate global CTAs.
A search for circularly polarised emission from young exoplanets
Creators: name: Lynch, C. R.
name: Murphy, Tara
name: Kaplan, D. L.
name: Ireland, M.
name: Bell, M. E.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: We report the results of a 154 MHz survey to search for emission from exoplanets located in the Upper Scorpius subgroup of the Sco Cen OB2 Association, the closest substantial region of recent star formation. This survey is different from previous efforts in that it is the first to target exoplanets orbiting Myr-old stars. Young exoplanet systems are expected to be the best candidates for radio detections given the higher magnetic field strengths predicted for young planets as well as the stronger and more dense stellar wind expected for the host stars. The radio emission from exoplanets is expected to be highly circularly polarised therefore we restricted our search to the circular polarisation images rather than the total intensity images. We carried out two different search methods using this data. The first method was a targeted search for exoplanet emission using catalogues of known stars and Hot Jupiters within the Upper Scorpius field. The second search method was a blind search for highly circularly polarised sources in the field and for sources identified only in our polarisation images. Both the blind and targeted search resulted in non-detections with typical 3-sigma flux density limits of 4--235 mJy over timescales of 1.87--1000 minutes. In particular, we place the first limits on low-frequency emission from the Hot Jupiter systems WASP-17 b and K2-33 b. These are the first results from a larger program to systematically search for low-frequency radio emission from planets orbiting young stars.
description: 7 pages, 1 figure, 2 tables
Additional file 1 of A CRISPR/dCas9 toolkit for functional analysis of maize genes
Creators: name: Gentzel, Irene N.
name: Park, Chan Ho
name: Bellizzi, Maria
name: Xiao, Guiqing
name: Gadhave, Kiran R.
name: Murphree, Colin
name: Yang, Qin
name: LaMantia, Jonathan
name: Redinbaugh, Margaret G.
name: Balint-Kurti, Peter
name: Sit, Tim L.
name: Wang, Guo-Liang
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1. Vector Maps. (A) pCXUN-HA-GFP used for testing protoplast transfection conditions. (B) Diagram of each pDA vector showing an ubiquitin-driven, Flag-tagged dCas9 with IV2 intron followed by transcription activators (VP64 and TAL-VP128) or suppressor (SRDX). A dual 35S promoter drives BAR for glufosinate resistance.
Bilayer Linearized Tensor Renormalization Group Approach for Thermal Tensor Networks
Creators: name: Dong, Yong-Liang
name: Chen, Lei
name: Liu, Yun-Jing
name: Li, Wei
Publisher: name: arXiv
Year: 2016
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: In this paper, we perform a comprehensive study of the renormalization group (RG) method on thermal tensor networks (TTN). By Trotter-Suzuki decomposition, one obtains the 1+1D TTN representing the partition function of 1D quantum lattice models, and then employs efficient RG contractions to obtain the thermodynamic properties with high precision. The linearized tensor renormalization group (LTRG) method, which can be used to contract TTN in an efficient and accurate way, is briefly reviewed. In addition, the single-layer LTRG can be generalized to a bilayer form, dubbed as LTRG++, in both finite- and infinite-size systems, with accuracies significantly improved. We provide the details of LTRG++ in finite-size system, comparing its accuracy with single-layer algorithm, and elaborate the infinite-size LTRG++ in the context of fermion chain model. We show that the LTRG++ algorithm in infinite-size system is in essence equivalent to transfer-matrix renormalization group method, while expressed in a tensor network language. LTRG++ is then applied to study an extended Hubbard model, where the phase separation phenomenon, groundstate phase diagram, as well as quantum criticality-enhanced magnetocaloric effects under external fields, are investigated.
description: 9 pages, 9 figures
title: ADCO, Comptes du Petit-Cîteaux (1477-1491) (11 H 1179), f. 00136
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Archives Départementales De La Côte D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2019
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire
subject: comptes
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Comptes du Petit-Cîteaux (1477-1491), Archives départementales de la Côte-d'Or, (11 H 1179). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Comptes du Petit-Cîteaux (1477-1491), Archives départementales de la Côte-d'Or, (11 H 1179), f. 00136, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Additional file 1: Table S1. of Adipokines levels in HIV infected patients: lipocalin-2 and fatty acid binding protein-4 as possible markers of HIV and antiretroviral therapy-related adipose tissue inflammation
Creators: name: Morieri, Mario
name: Guardigni, Viola
name: Sanz, Juana
name: Nora, Edoardo Dalla
name: Soavi, Cecilia
name: Zuliani, Giovanni
name: Sighinolfi, Laura
name: Passaro, Angelina
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: General characteristics of the population according to treatment status. (DOCX 15Â kb)
Saxifraga rotundifolia var. insularis Briq.
Creators: name: Jeanmonod, Daniel
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Saxifragales
Saxifragaceae
Saxifraga
Saxifraga rotundifolia
Saxifraga rotundifolia var. insularis briq.

description: Saxifraga rotundifolia var. insularis Briq., Prodr. Fl. Corse 2(1): 146. 1913.
Lectotypus (hic designatus): FRANCE. Corse: Massif de l’Incudine, Punta del Fornello, 1750 m, 25.VII.1910, Briquet, Saint-Yves & Cavillier 1920 (G-BU [G00830092]!). Syntypi: (G-BU [G00830085, G00830088, G00830090, G00830093, G00830094, G00830095]!; isosyn-: G [G00429824, G00429825]!).
description: Published as part of Jeanmonod, Daniel, 2018, Typification des noms de taxons corses de l'herbier Burnat (G-BU), pp. 61-74 in Candollea 73 (1) on page 71, DOI: 10.15553/c2018v731a6, http://zenodo.org/record/5722164
Additional file 3 of A CRISPR/dCas9 toolkit for functional analysis of maize genes
Creators: name: Gentzel, Irene N.
name: Park, Chan Ho
name: Bellizzi, Maria
name: Xiao, Guiqing
name: Gadhave, Kiran R.
name: Murphree, Colin
name: Yang, Qin
name: LaMantia, Jonathan
name: Redinbaugh, Margaret G.
name: Balint-Kurti, Peter
name: Sit, Tim L.
name: Wang, Guo-Liang
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3. Dual luciferase assay components and preliminary results. (A) pGreenII-800-RNAI-PDS1-Luc dual luciferase construct, where Renilla luciferase provides an internal control for PDS1-driven Firefly luciferase. Dual luciferase assay using maize protoplasts co-transfected with indicated PDS1 gRNAs and dCas9-SRDX (B) or dCas9-VP64 (C). Data shown in B and C are from one biological replicate. An additional control construct was developed where GFP was expressed from the dual luciferase vector pGreenII-800-RNAI-Luc (D). Expression was detected by Western blot (E), which shows four separate maize protoplast transfection samples with this construct, compared to the no transfection, no DNA, and positive controls.
Yangian Symmetry for Bi-Scalar Loop Amplitudes
Creators: name: Chicherin, Dmitry
name: Kazakov, Vladimir
name: Loebbert, Florian
name: Müller, Dennis
name: Zhong, De-liang
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: We establish an all-loop conformal Yangian symmetry for the full set of planar amplitudes in the recently proposed integrable bi-scalar field theory in four dimensions. This chiral theory is a particular double scaling limit of gamma-twisted weakly coupled N=4 SYM theory. Each amplitude with a certain order of scalar particles is given by a single fishnet Feynman graph of disc topology cut out of a regular square lattice. The Yangian can be realized by the action of a product of Lax operators with a specific sequence of inhomogeneity parameters on the boundary of the disc. Based on this observation, the Yangian generators of level one for generic bi-scalar amplitudes are explicitly constructed. Finally, we comment on the relation to the dual conformal symmetry of these scattering amplitudes.
description: 40 pages, 20 figures