cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Class III Archaeological Survey of 75 Acres in the Vicinity of Arroyo Del Coyote Canyon, New Mexico
Creators: name: Acklen, John C.
name: Earls, Amy C.
Publisher: name: Mariah Associates, Inc.
Year: 1987
Subjects: subject: Bernalillo (County)
valueUri: https://core.tdar.org/browse/geographic-keyword/3646/bernalillo-county
subject: Albuquerque, New Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/84765/albuquerque-new-mexico
subject: Kirtland Air Force Base
valueUri: https://core.tdar.org/browse/geographic-keyword/17943/kirtland-air-force-base
subject: Historic
valueUri: https://core.tdar.org/browse/temporal-keyword/5728/historic
subject: Prehistoric
valueUri: https://core.tdar.org/browse/temporal-keyword/53/prehistoric
subject: Anasazi
valueUri: https://core.tdar.org/browse/culture-keyword/84/anasazi
subject: Historic
valueUri: https://core.tdar.org/browse/culture-keyword/25/historic
subject: LA 53674
valueUri: https://core.tdar.org/browse/site-name/126766/la-53674
subject: LA 53673
valueUri: https://core.tdar.org/browse/site-name/126765/la-53673
subject: LA 64556
valueUri: https://core.tdar.org/browse/site-name/132883/la-64556
subject: LA 64560
valueUri: https://core.tdar.org/browse/site-name/132884/la-64560
subject: LA 64557
valueUri: https://core.tdar.org/browse/site-name/132882/la-64557
subject: LA 64558
valueUri: https://core.tdar.org/browse/site-name/129974/la-64558
subject: LA 64559
valueUri: https://core.tdar.org/browse/site-name/129304/la-64559
subject: LA 64561
valueUri: https://core.tdar.org/browse/site-name/132885/la-64561
subject: Mine
valueUri: https://core.tdar.org/browse/site-type/290/mine
subject: Mine Tunnels
valueUri: https://core.tdar.org/browse/site-type/291/mine-tunnels
subject: Mine-Related Structures
valueUri: https://core.tdar.org/browse/site-type/292/mine-related-structures
subject: Artifact Scatter
valueUri: https://core.tdar.org/browse/site-type/340/artifact-scatter
subject: Pit House / Earth Lodge
valueUri: https://core.tdar.org/browse/site-type/263/pit-house-earth-lodge
subject: Isolated Artifact
valueUri: https://core.tdar.org/browse/site-type/344/isolated-artifact
subject: Ceramic
valueUri: https://core.tdar.org/browse/material-type/1/ceramic
subject: Chipped Stone
valueUri: https://core.tdar.org/browse/material-type/2/chipped-stone
subject: Reconnaissance / Survey
valueUri: https://core.tdar.org/browse/investigation-type/7/reconnaissance-survey

description: This report summarizes the results of an archaeological survey of approximately 75 acres of land on withdrawn Cibola National Forest within Kirtland Air Force Base in Bernalillo County, New Mexico. The project area is located approximately two and one half miles southeast of the Albuquerque city limits. A total of eight sites and six isolated occurrences were encountered. Of the eight sites, two are considered to be significant cultural resources. Four additional resources require further investigation to ascertain significance. The remaining two sites should require no additional archaeological treatment.
Logarithmic entropy corrected holographic dark energy with $F(R,T)$ gravity
Creators: name: Amani, Ali R.
name: Samiee-Nouri, A.
Publisher: name: arXiv
Year: 2014
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In this paper, we have considered $F(R,T)$ gravity as a linear function of the curvature and torsion scalars and interacted it with logarithmic entropy corrected holographic dark energy to evaluate cosmology solutions. The model has been investigated by FRW metric, and then the energy density and the pressure of dark energy have calculated. Also we obtained equation of state (EoS) parameter of dark energy and has plotted it with respect to both variable of cosmic time and $e$-folding number. Finally, we have described the scenario in three status: early, late and future time by $e$-folding number.
description: 12 pages, 8 figures
Archaeological Survey of Proposed Kirtland Air Force Base Program Areas, Bernalillo County, New Mexico
Creators: name: Gerow, Peggy A.
Year: 1990
Subjects: subject: Bernalillo (County)
valueUri: https://core.tdar.org/browse/geographic-keyword/3646/bernalillo-county
subject: Albuquerque, New Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/84765/albuquerque-new-mexico
subject: Kirtland Air Force Base
valueUri: https://core.tdar.org/browse/geographic-keyword/17943/kirtland-air-force-base
subject: Historic
valueUri: https://core.tdar.org/browse/temporal-keyword/5728/historic
subject: Prehistoric
valueUri: https://core.tdar.org/browse/temporal-keyword/53/prehistoric
subject: Negative Result
valueUri: https://core.tdar.org/browse/other-keyword/76495/negative-result
subject: Cultural Resources Clearance
valueUri: https://core.tdar.org/browse/other-keyword/168090/cultural-resources-clearance
subject: Reconnaissance / Survey
valueUri: https://core.tdar.org/browse/investigation-type/7/reconnaissance-survey
subject: Records Search / Inventory Checking
valueUri: https://core.tdar.org/browse/investigation-type/8/records-search-inventory-checking

description: The Office of Contract Archeology, University of New Mexico conducted a cultural resources inventory of 493 acres of land on the east mesa of Albuquerque, New Mexico, on and adjacent to Kirtland Air Force Base. The survey was undertaken at the request of Tetra Tech, Inc. as part of their environmental impact analysis for the proposed relocation of operations from Los Angeles Air Force Base to Kirtland Air Force Base. No archeological sites or isolated occurrences were documented within the area surveyed. Consequently, archeological clearance is recommended.
Protein structure prediction: Do hydrogen bonding and water-mediated interactions suffice?
Creators: name: Wolynes, Peter G.
name: Oklejas, Vanessa
name: Papoian, Garegin A.
name: Zong, Chenghang
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2010

description: The many-body physics of hydrogen bond formation in alpha-helices of globular proteins was investigated using a simple physics-based model. Specifically, a context-sensitive hydrogen bond potential, which depends on residue identity and degree of solvent exposure, was used in the framework of the Associated Memory Hamiltonian codes developed previously but without using local sequence structure matches (“memories”). Molecular dynamics simulations employing the energy function using the context-sensitive hydrogen bond potential alone (the “amnesiac” model) were used to generate low energy structures for three alpha-helical test proteins. The resulting structures were compared to both the X-ray crystal structures of the test proteins and the results obtained using the full Associated Memory Hamiltonian previously used. Results show that the amnesiac Hamiltonian was able to generate structures with reasonably high structural similarity (Q ~ 0.4) to that of the native protein but only with the use of predicted secondary structure information encoding local steric signals. Low energy structures obtained using the amnesiac Hamiltonian without any a priori secondary structure information had considerably less similarity to the native protein structures (Q ~ 0.3). Both sets of results utilizing the amnesiac Hamiltonian are poorer than when local-sequence structure matches are used.
title: The Impact of Land on the 'Right to Energy' in Namibia
Creators: name: Reß, Theresa
Publisher: name: University of Bayreuth
Year: 2022
Subjects: subject: Namibia
subject: Energy
subject: Policy
subject: 320
subject: 380

description: Energy plays nowadays an essential role for a countries’ development and economic growth. Particularly interesting is thereby the case of Namibia. As a young, previously colonized nation, the country is currently working towards economic development. This includes pushing forward its energy sector and increasing the energy distribution. However, despite the efforts, progress is only slow. At the same time, ‘land’ is a highly critical topic, as the nation is trying to overcome the remnants of its colonial past. With land and energy playing such a big role, chances are high that both might impact each other, thereby affecting the respective progress. This thesis therefore analyses the ‘land – energy’ situation in Namibia, as well as potential linkages in terms of the ‘right to energy’ and energy justice. While the connection of land and energy certainly affects the nations’ current development, this is clearly only partly the reason for all the issues. Against that, the more crucial factor hindering the progress is the persistence of Namibia’s colonial past. Thus, hysteresis effects and path dependencies strongly impact citizens on a local level, but also the institutional and political decisions. It causes infrastructures like the centralized energy system to remain in force, and colonial ideas and beliefs to still be a large part of peoples’ everyday life. In this way, they create a strong inequality in terms of energy, that still go along racial, apartheid lines, ultimately also affecting the ‘right to energy’. Accordingly, in Namibia this ‘right to energy’ is denied due to these dependencies on historic systems and beliefs. It leads to energy injustice, whereby the people discriminated are the same citizens that were already suppressed during Namibia’s past. Thus, rather than benefiting from new innovations or the governments’ attempts of restructuring the energy system, many Namibians keep relying on their adopted habits, preventing themselves from progress and the development of a fair energy system. It is thereby the combination of a challenging geographic and demographic context, unsuitable infrastructures, and institutions and beliefs based on past ideas that prevent the energy system from progressing. In this way, the natural land – energy – nexus is aggravated by the persistence of history, blocking both, the countries land reform and energy sector development.
Pre and post-operative ph-metry in videolaparoscopic surgery for gastro oesophageal reflux disease
Creators: name: Garzi, Alfredo
name: Ardimento, Gaetano
name: Ferrentino, Umberto
name: Brongo, Sergio
name: Di Crescenzo, Rosa Maria
name: Calabrò, Eleonora
name: Rubino, Maria Serena
name: Malamisura, Basilio
name: Clemente, Ennio
Publisher: name: Universita' degli Studi di Salerno
Year: 2019
Subjects: Gastroesophageal reflux
Videolaparoscopic surgery
pH-metry
Outcome
Follow-up

description: Gastro-oesophageal reflux is common in children, especially in the first year of life, and it may be regarded as physiological. Good functioning of the lower oesophageal sphincter depends largely on the anatomical relationships between oesophagus, stomach and diaphragm hiatus. Relative immaturity of these structures in newborn babies and young children is a risk factor in reflux disease, which may result in a wide variety of typical and/or atypical symptoms and, sometimes, serious complications such as oesophagitis and stenosis. Reflux disease may be diagnosed and studied, basing on morphological and functional aspects and, since the advent of pH-metry, it is possible to personalise the therapeutic approach to children with reflux. Surgical treatment of reflux disease in children has recently been improved due to a mini-invasive surgical approach. Absolute indications are recurrent pneumonia, intractable pain due to oesophagitis and retarded growth, often in association with neurological impairment. In the last three years, 18 children with reflux disease underwent videolaparoscopic surgery in our department, 14 by the Nissen and 4 by the Toupet technique. Post-operative pH-metry always showed a reduction in exposure of the distal oesophagus to acid (integral of H+) and an improvement in oesophageal clearance (short refluxes percentage) indicative of good functioning of the gastro-oesophageal junction. PH-metry proved to be an invaluable technique for planning therapeutic strategy. In follow-up evaluations, it enabled us to monitor functioning of the gastro-oesophageal junction and to avoid other more difficult and invasive tests in patients with severe neurological impairment.
Additional file 3 of Exploring fine-scale urban landscapes using satellite data to predict the distribution of Aedes mosquito breeding sites
Creators: name: Teillet, Claire
name: Devillers, Rodolphe
name: Tran, Annelise
name: Catry, Thibault
name: Marti, Renaud
name: Dessay, Nadine
name: Rwagitinywa, Joseph
name: Restrepo, Johana
name: Roux, Emmanuel
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified

description: Supplementary Material 3
Supplemental Material-Frontiers
Creators: name: Zhang, Huabing
Publisher: name: figshare
Year: 2022
Subjects: subject: 110306 Endocrinology
subject: FOS: Clinical medicine
subject: 110107 Metabolic Medicine

description: We used the data from China Health and Nutrition Survey to examine the association between occupational and domestic physical activity and the risk of diabetes in a long-term prospective cohort of Chinese adults.
Performance of the ALICE muon trigger RPCs during LHC Run I
Creators: name: Fontana, Mattia
Publisher: name: arXiv
Year: 2014
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: ALICE (A Large Ion Collider Experiment) studies the transition of nuclear matter to a deconfined phase known as Quark Gluon Plasma, in ultra-relativistic heavy-ion collisions at the LHC. ALICE is equipped with a muon spectrometer for the detection of quarkonia and heavy flavour particles. The trigger system of the spectrometer consists of 72 RPCs arranged in four detection planes, with a total area of 140 m^{2}. In the first three years of LHC operation, the muon trigger system was fully operational in data-taking in pp, Pb-Pb and p-Pb collisions. The RPC performance and stability throughout the whole data-taking period is presented and discussed, for the parameters such as the efficiency, the dark counting rate, the dark current and the cluster size.
description: 9 pages, proceeding for XII Workshop on Resistive plate Chambers and Related Detectors (RPC 2014 - Beijing February 2014)
Rapid purification of helicase proteins and in vitro analysis of helicase activity
Creators: name: Tahmaseb, Kambiz
name: Matson, Steven W.
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2010

description: Most processes involving an organism’s genetic material, including replication, repair and recombination, require access to single stranded DNA as a template or reaction intermediate. To disrupt the hydrogen bonds between the two strands in double stranded DNA, organisms utilize proteins called DNA helicases. DNA helicases use duplex DNA as a substrate to create single stranded DNA in a reaction that requires ATP hydrolysis. Due to their critical role in cellular function, understanding the reaction catalyzed by helicases is essential to understanding DNA metabolism. Helicases are also important in many disease processes due to their role in DNA maintenance and replication. Here we discuss ways to rapidly purify helicases in sufficient quantity for biochemical analysis. We also briefly discuss potential substrates to use with helicases to establish some of their critical biochemical parameters. Through the use of methods that simplify the study of helicases, our understanding of these essential proteins can be accelerated.
Embedding polydisk algebras into the disk algebra and an application to stable ranks
Creators: name: Mortini, Raymond
Publisher: name: arXiv
Year: 2014
Subjects: subject: Complex Variables (math.CV)
subject: FOS: Mathematics
subject: Primary 46J15, Secondary 32A38, 30H05, 54C40

description: It is shown how to embed the polydisk algebras (finite and infinite ones) into the disk algebra $A(\overline{\mathbb D})$. As a consequence, one obtains uniform closed subalgebras of $A(\overline{\mathbb D})$ which have arbitrarily prescribed stable ranks
description: 5 pages
SHAPE-directed RNA secondary structure prediction
Creators: name: Low, Justin T.
name: Weeks, Kevin M.
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2010

description: The diverse functional roles of RNA are determined by its underlying structure. Accurate and comprehensive knowledge of RNA structure would inform a broader understanding of RNA biology and facilitate exploiting RNA as a biotechnological tool and therapeutic target. Determining the pattern of base pairing, or secondary structure, of RNA is a first step in these endeavors. Advances in experimental, computational, and comparative analysis approaches for analyzing secondary structure have yielded accurate structures for many small RNAs, but only a few large (>500 nts) RNAs. In addition, most current methods for determining a secondary structure require considerable effort, analytical expertise, and technical ingenuity. In this review, we outline an efficient strategy for developing accurate secondary structure models for RNAs of arbitrary length. This approach melds structural information obtained using SHAPE chemistry with structure prediction using nearest-neighbor rules and the dynamic programming algorithm implemented in the RNAstructure program. Prediction accuracies reach ≥95% for RNAs on the kilobase scale. This approach facilitates both development of new models and refinement of existing RNA structure models, which we illustrate using the Gag-Pol frameshift element in an HIV-1 M-group genome. Most promisingly, integrated experimental and computational refinement brings closer the ultimate goal of efficiently and accurately establishing the secondary structure for any RNA sequence.
Additional file 1 of Experiences of caregivers of community-dwelling older persons with moderate to advanced dementia in adapting the Namaste Care program: a qualitative descriptive study
Creators: name: Yous, Marie-Lee
name: Ploeg, Jenny
name: Kaasalainen, Sharon
name: McAiney, Carrie
Publisher: name: figshare
Year: 2022
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1. GRIPP2 reporting checklist.
Approaches for probing the sequence space of substrates recognized by molecular chaperones
Creators: name: Kota, Pradeep
name: Dokholyan, Nikolay V.
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2011

description: Neurodegeneration, the progressive loss of function in neurons that eventually leads to their death, is the cause of many neurodegenerative disorders including Alzheimer’s, Parkinson’s, and Huntington’s diseases. Protein aggregation is a hallmark of most neurodegenerative diseases, where unfolded proteins form intranuclear, cytosolic, and extracellular insoluble aggregates in neurons. Mounting evidence from studies in neurodegenerative disease models shows that molecular chaperones, key regulators of protein aggregation and degradation, play critical roles in the progression of neurodegeneration. Although chaperones exhibit promiscuity in their substrate specificity, specific molecular features are required for substrate recognition. Understanding the basis for substrate recognition by chaperones will aid in the development of therapeutic strategies that regulate chaperone expression levels in order to combat neurodegeneration. Many experimental techniques, including alanine scanning mutagenesis and phage display library screening, have been developed and applied to understand the basis of substrate recognition by chaperones. Here, we present computational algorithms that can be applied to rapidly screen the sequence space of potential substrates to determine the sequence and structural requirements for substrate recognition by chaperones.
What Do WeTalk About When WeTalk About Citizen Science?
Creators: name: Strähle, Michael
name: Urban, Christine
Publisher: name: Zenodo
Year: 2020
Subjects: citizen science
EU project
Horizon 2020
H2020

description: This presentation builds on report D1.1 of the CS Track project and was given at the EASST/4S conference on 18 August 2020.
Do Two Temperature Debris Disks Have Multiple Belts?
Creators: name: Kennedy, Grant M.
name: Wyatt, Mark C.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We present a study of debris disks whose spectra are well modelled by dust emission at two different temperatures. These disks are typically assumed to be a sign of multiple belts, which in only a few cases have been confirmed via high resolution observations. We first compile a sample of two-temperature disks to derive their properties, summarised by the ratios of the warm and cool component temperatures and fractional luminosities. The ratio of warm to cool temperatures is constant in the range 2-4, and the temperatures of both warm and cool components increases with stellar mass. We then explore whether this emission can arise from dust in a single narrow belt, with the range of temperatures arising from the size variation of grain temperatures. This model can produce two-temperature spectra for Sun-like stars, but is not supported where it can be tested by observed disk sizes and far-IR/mm spectral slopes. Therefore, while some two-temperature disks arise from single belts, it is probable that most have multiple spatial components. These disks are plausibly similar to the outer Solar System's configuration of Asteroid and Edgeworth-Kuiper belts separated by giant planets. Alternatively, the inner component could arise from inward scattering of material from the outer belt, again due to intervening planets. In either case, we suggest that the ratio of warm/cool component temperatures is indicative of the scale of outer planetary systems, which typically span a factor of about ten in radius.
description: accepted to MNRAS
USDA Forest Service Inventory Standards and Accounting Form: Negative Report - No Sites Present: Military Withdrawal Fuelwood/Burning
Creators: name: Agpaoa, Liz
Year: 2000
Subjects: subject: Bernalillo (County)
valueUri: https://core.tdar.org/browse/geographic-keyword/3646/bernalillo-county
subject: Albuquerque, New Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/84765/albuquerque-new-mexico
subject: Kirtland Air Force Base
valueUri: https://core.tdar.org/browse/geographic-keyword/17943/kirtland-air-force-base
subject: Historic
valueUri: https://core.tdar.org/browse/temporal-keyword/5728/historic
subject: Prehistoric
valueUri: https://core.tdar.org/browse/temporal-keyword/53/prehistoric
subject: Military Withdrawl Fuelwood/Burning
valueUri: https://core.tdar.org/browse/other-keyword/168031/military-withdrawl-fuelwoodburning
subject: Embudito Trail Reroute
valueUri: https://core.tdar.org/browse/other-keyword/168032/embudito-trail-reroute
subject: Bonita Canyon Prescribed Burn
valueUri: https://core.tdar.org/browse/other-keyword/168030/bonita-canyon-prescribed-burn
subject: Cultural Resources Clearance
valueUri: https://core.tdar.org/browse/other-keyword/168090/cultural-resources-clearance
subject: Consultation
valueUri: https://core.tdar.org/browse/investigation-type/4/consultation

description: Completed USDA Forest Service 'Inventory Standards and Accounting: Negative Report - No Sites Present Form' (R3-FS-2300-4a) in support of a prescribed burn project entitled, Military Withdrawal Fuelwood/Burning. New Mexico State Historic Preservation Office (SHPO) concurrence is also included.
Evaluating age-associated phenotypes in a mouse model of protein dyshomeostasis
Creators: name: Min, Jin-Na
name: Patterson, Cam
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2011

description: Proteotoxicity caused by an imbalanced protein quality control surveillance system is believed to contribute to the phenotypes associated with aging as well as many neurodegenerative diseases. Understanding and monitoring the impact of proteotoxicity in these processes offers researchers keen insight into the biology of aging, as well as other conditions that share similar pathological etiologies. In this methods review we present various technical approaches that can be used to calculate and characterize the phenotypes associated with aging that are linked to increased proteotoxicity. Methods such as the measurement of oligomer protein expression and the capacity of proteasome function are useful tools in observing both aging phenotypes and neurodegenerative diseases, both of which share the phenomenon of impaired protein homeostasis.
Additional file 1 of Selection of the optimal channel configuration for implementing wearable EEG devices for the diagnosis of mild cognitive impairment
Creators: name: Lee, Kyeonggu
name: Choi, Kang-Min
name: Park, Seonghun
name: Lee, Seung-Hwan
name: Im, Chang-Hwan
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Computational Biology

description: Additional file 1: Supplementary Table 1. Performances of the top 10 electrode configurations composed of two electrodes. The table lists the calculated accuracies, sensitivities, and specificities for the top 10 electrode configurations with the highest accuracies. These values were used as performance measures. Supplementary Table 2. Performances of the top 10 electrode configurations composed of four electrodes. The table lists the calculated accuracies, sensitivities, and specificities for the top 10 electrode configurations with the highest accuracies. These values were used as performance measures. Supplementary Table 3. Performances of the top 20 electrode configurations composed of six electrodes. The table lists the calculated accuracies, sensitivities, and specificities for the top 20 electrode configurations with the highest accuracies. These values were used as performance measures. Supplementary Table 4. Performances of the top 20 electrode configurations composed of eight electrodes. The table lists the calculated accuracies, sensitivities, and specificities for the top 20 electrode configurations with the highest accuracies. These values were used as performance measures. Supplementary Figure 1. List of the most frequently selected features. The features were most frequently selected in all CV iterations for the number of features that yielded the highest accuracy in each optimal electrode configuration. From top to bottom, the feature list of the Opt-2ch, Opt-4ch, Opt6ch, and Opt-8ch configurations are described. The x-axis is “oftenness,” which is calculated by dividing the feature selection times by all CV iteration times (441).
Definitions, categorisations and characterisations of citizen science: analysis, suggestions and open questions
Creators: name: Strähle, Michael
name: Urban, Christine
Publisher: name: Zenodo
Year: 2021
Subjects: citizen science
EU project
characterisations of citizen science
categorisations of citizen science
Definitions of citizen science
Horizon
H2020

description: “Citizen science” is a label attached to many approaches involving publics in research processes: participatory monitoring, community-based research, scientific crowdsourcing, biohacking and participatory action research, just to name a few (e.g., see Wikipedia). Categorizations and typologies have been developed in order to get an overview of what the term means and to differentiate between the various forms of citizen science.
Slow synaptic dynamics in a network: from exponential to power-law forgetting
Creators: name: Luck, J. M.
name: Mehta, A.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Neurons and Cognition (q-bio.NC)
subject: FOS: Physical sciences
subject: FOS: Biological sciences

description: We investigate a mean-field model of interacting synapses on a directed neural network. Our interest lies in the slow adaptive dynamics of synapses, which are driven by the fast dynamics of the neurons they connect. Cooperation is modelled from the usual Hebbian perspective, while competition is modelled by an original polarity-driven rule. The emergence of a critical manifold culminating in a tricritical point is crucially dependent on the presence of synaptic competition. This leads to a universal $1/t$ power-law relaxation of the mean synaptic strength along the critical manifold and an equally universal $1/\sqrt{t}$ relaxation at the tricritical point, to be contrasted with the exponential relaxation that is otherwise generic. In turn, this leads to the natural emergence of long- and short-term memory from different parts of parameter space in a synaptic network, which is the most novel and important result of our present investigations.
description: 12 pages, 8 figures. Phys. Rev. E (2014) to appear
Rosetta3: An Object-Oriented Software Suite for the Simulation and Design of Macromolecules
Creators: name: Richter, Florian
name: Berrondo, Monica
name: Leaver-Fay, Andrew
name: Thompson, James
name: Cooper, Seth
name: Mandell, Daniel J.
name: Ban, Yih-En Andrew
name: Sheffler, Will
name: Kuhlman, Brian
name: Jacak, Ron
name: Renfrew, P. Douglas
name: Davis, Ian W.
name: Lange, Oliver F.
name: Baker, David
name: Lewis, Steven M.
name: Das, Rhiju
name: Fleishman, Sarel J.
name: Kim, David E.
name: Kortemme, Tanja
name: Lyskov, Sergey
name: Corn, Jacob E.
name: Bradley, Philip
name: Smith, Colin A.
name: Tyka, Michael
name: Karanicolas, John
name: Mentzer, Stuart
name: Gray, Jeffrey J.
name: Meiler, Jens
name: Popović, Zoran
name: Havranek, James J.
name: Kaufman, Kristian W.
name: Treuille, Adrien
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2011

description: We have recently completed a full re-architecturing of the Rosetta molecular modeling program, generalizing and expanding its existing functionality. The new architecture enables the rapid prototyping of novel protocols by providing easy to use interfaces to powerful tools for molecular modeling. The source code of this rearchitecturing has been released as Rosetta3 and is freely available for academic use. At the time of its release, it contained 470,000 lines of code. Counting currently unpublished protocols at the time of this writing, the source includes 1,285,000 lines. Its rapid growth is a testament to its ease of use. This document describes the requirements for our new architecture, justifies the design decisions, sketches out central classes, and highlights a few of the common tasks that the new software can perform.
Spatiotemporal Control of Small GTPases with Light Using the LOV Domain
Creators: name: Montell, Denise
name: Wu, Yi I.
name: Wang, Xiaobo
name: Hahn, Klaus M.
name: He, Li
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2011

description: Signaling networks in living systems are coordinated through subcellular compartmentalization and precise timing of activation. These spatiotemporal aspects ensure the fidelity of signaling while contributing to the diversity and of downstream events. This is studied through development of molecular tools that generate localized and precisely timed protein activity in living systems. To study the molecular events responsible for cytoskeletal changes in real time, we generated versions of Rho family GTPases whose interactions with downstream effectors is controlled by light. GTPases were grafted to the phototropin LOV (light, oxygen, or voltage) domain (Huala, E., Oeller, P. W., Liscum, E., Han, I., Larsen, E., and Briggs, W. R. (1997). Arabidopsis NPH1: A protein kinase with a putative redox-sensing domain. Science 278, 2120–2123.) via an alpha helix on the LOV C-terminus (Wu, Y. I., Frey, D., Lungu, O. I., Jaehrig, A., Schlichting, I., Kuhlman, B., and Hahn, K. M. (2009). A genetically encoded photoactivatable Rac controls the motility of living cells. Nature 461, 104–108.). The LOV domain sterically blocked the GTPase active site until it was irradiated. Exposure to 400–500 nm light caused unwinding of the helix linking the LOV domain to the GTPase, relieving steric inhibition. The change was reversible and repeatable, and the protein could be returned to its inactive state simply by turning off the light. The LOV domain incorporates a flavin as the active chromophore. This naturally occurring molecule is incorporated simply upon expression of the LOV fusion in cells or animals, permitting ready control of GTPase function in different systems. In cultured single cells, light-activated Rac leads to membrane ruffling, protrusion, and migration. In collectively migrating border cells in the Drosophila ovary, focal activation of photoactivatable Rac (PA-Rac) in a single cell is sufficient to redirect the entire group. PA-Rac in a single cell also rescues the phenotype caused by loss of endogenous guidance receptor signaling in the whole group. These findings demonstrate that cells within the border cell cluster communicate and are guided collectively. Here, we describe optimization and application of PA-Rac using detailed examples that we hope will help others apply the approach to different proteins and in a variety of different cells, tissues, and organisms.
Snapchat und das fotografische Gedächtnis des Internets
Creators: name: Simanowski, Roberto
Publisher: name: R. Simanowski, Snapchat und das fotografische Gedächtnis des Internets, «Public history weekly», 2, 2014, n. 24
Year: 2014

description: Speichergedächtnis Archiv und gesellschaftliches Funktionsgedächtnis verhalten sich zueinander wie Fotografie und Malerei. Mit dem Internet wird der gesamte Alltag archiviert, worauf die Kultur mit Gerichtsurteilen antwortet, die das Vergessen sichern sollen, und auch mit Vergessenstechnologien wie Snapchat. Die List der Technik liegt darin, dass diese Ephemeralisierung der Kommunikation im Grunde der Aggregation weiterer, fotografischer Daten dient.
D6.4 VALKYRIES harmonisations on first aid preparedness and cross-sectorial collaboration
Creators: name: Yanakiev, Yantsislav
Publisher: name: Zenodo
Year: 2023

description: The goal of this deliverable is to analyse the top-5 ranked collaboration, education and training harmonisation opportunities in WP6 with respect to the importance and feasibility to suggest these opportunities for harmonisation at the EU level. To achieve this goal, the WP6 team analysed first the compliance of System Requirements defined in D2.7 with the VALKYRIES objectives and achieved results described in the WP6 deliverables. Besides, based on the commonly agreed upon among the leaders of WP4, WP5 and WP6 methodology, the partners carried out a SWOT analysis to identify the Strengths, Weaknesses, Opportunities and Threats of each prioritised harmonization opportunity. Moreover, the VALKYRIES approach for implementation of each of the suggested opportunities is presented in detail. Finally, some suggestions and recommendations regarding the process of harmonisation of first aid preparedness and cross-sectorial collaboration in case of cross-border Multi-Casualty Incidents (MCI) are formulated.
Additional file 1 of Association of Underlying Comorbidities and Sites of tuberculosis: an analysis using surveillance data
Creators: name: Jeong, Yun-Jeong
name: Kang, Ji Young
name: Kim, Hyung Woo
name: Min, Jinsoo
name: Ko, Yousang
name: Oh, Jee Youn
name: Kang, Hyeon Hui
name: Lim, Sung Chul
name: Hwang, Hun-Gyu
name: Shin, Kyeong-Cheol
name: Lee, Heung Bum
name: Kim, Ju Sang
name: Park, Jae Seuk
name: Lee, Sung Soon
name: Koo, Hyeon-Kyoung
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1.
Skyrmion-like states in multilayer exchange coupled ferromagnetic nanostructures with distinct anisotropy directions
Creators: name: Fraerman, A. A.
name: Ermolaeva, O. L.
name: Skorohodov, E. V.
name: Gusev, N. S.
name: Mironov, V. L.
name: Vdovichev, S. N.
name: Demidov, E. S.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We report the experimental observation of magnetic skyrmion-like states in patterned ferromagnetic nanostructures consisting of perpendicular magnetized Co/Pt multilayer film exchange coupled with Co nanodisks in vortex state. The magnetic force microscopy and micromagnetic simulations show that depending on the magnitude of Co/Pt perpendicular anisotropy in these systems two different modes of skyrmion formation are realized.
description: 3 pages, 3 figures
Additional file 2 of Association of Underlying Comorbidities and Sites of tuberculosis: an analysis using surveillance data
Creators: name: Jeong, Yun-Jeong
name: Kang, Ji Young
name: Kim, Hyung Woo
name: Min, Jinsoo
name: Ko, Yousang
name: Oh, Jee Youn
name: Kang, Hyeon Hui
name: Lim, Sung Chul
name: Hwang, Hun-Gyu
name: Shin, Kyeong-Cheol
name: Lee, Heung Bum
name: Kim, Ju Sang
name: Park, Jae Seuk
name: Lee, Sung Soon
name: Koo, Hyeon-Kyoung
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2.
Additional file 1 of Adiposity and mortality among intensive care patients with COVID-19 and non-COVID-19 respiratory conditions: a cross-context comparison study in the UK
Creators: name: Bell, Joshua A.
name: Carslake, David
name: Hughes, Amanda
name: Tilling, Kate
name: Dodd, James W.
name: Doidge, James C.
name: Harrison, David A.
name: Rowan, Kathryn M.
name: Davey Smith, George
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 1: Figure S1 Age and sex profiles of ICU patients with COVID-19 (1 March 2020 to 31 July 2021) and non-COVID-19 respiratory conditions (1 Feb 2018 to 31 Aug 2019), by admission date.
Effective Lagrangians for quantum many-body systems
Creators: name: Andersen, Jens O.
name: Brauner, Tomas
name: Hofmann, Christoph P.
name: Vuorinen, Aleksi
Publisher: name: arXiv
Year: 2014
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The low-energy and low-momentum dynamics of systems with a spontaneously broken continuous symmetry is dominated by the ensuing Nambu-Goldstone bosons. It can be conveniently encoded in a model-independent effective field theory whose structure is fixed by symmetry up to a set of effective coupling constants. We construct the most general effective Lagrangian for the Nambu-Goldstone bosons of spontaneously broken global internal symmetry up to the fourth order in derivatives. Rotational invariance and spatial dimensionality of one, two or three are assumed in order to obtain compact explicit expressions, but our method is completely general and can be applied without modifications to condensed matter systems with a discrete space group as well as to higher-dimensional theories. The general low-energy effective Lagrangian for relativistic systems follows as a special case. We also discuss the effects of explicit symmetry breaking and classify the corresponding terms in the Lagrangian. Diverse examples are worked out in order to make the results accessible to a wide theoretical physics community.
description: 45 pages
Wastewater disinfection by AOPs: effect on antibiotic resistance and contaminants of emerging concern
Creators: name: Ferro, Giovanna
Publisher: name: Universita degli studi di Salerno
Year: 2016
Subjects: subject: ICAR/03 INGEGNERIA SANITARIA-AMBIENTALE
subject: Bacteria
subject: Genes
subject: Reuse

description: 2014 - 2015
description: Urban wastewater treatment is called for facing different challenges worldwide, such as energy saving, resource recovery and resue... [edited by Author]
Use of yeast as a system to study amyloid toxicity
Creators: name: Cyr, Douglas M.
name: Summers, Daniel W.
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2011

description: The formation of amyloid-like fibrils is a hallmark of several neurodegenerative diseases. How the assembly of amyloid-like fibrils contributes to cell death is a major unresolved question in the field. The budding yeast Saccharomyces cerevisiae is a powerful model organism to study basic mechanisms for how cellular pathways regulate amyloid assembly and proteotoxicity. For example, studies of the amyloidogenic yeast prion [RNQ+] have revealed novel roles by which molecular chaperones protect cells from the accumulation of cytotoxic protein species. In budding yeast there are a variety of cellular assays that can be employed to analyze the assembly of amyloid-like aggregates and mechanistically dissect how cellular pathways influence proteotoxicity. In this review, we describe several assays that are routinely used to investigate aggregation and toxicity of the [RNQ+] prion in yeast.
Additional file 3 of Association of Underlying Comorbidities and Sites of tuberculosis: an analysis using surveillance data
Creators: name: Jeong, Yun-Jeong
name: Kang, Ji Young
name: Kim, Hyung Woo
name: Min, Jinsoo
name: Ko, Yousang
name: Oh, Jee Youn
name: Kang, Hyeon Hui
name: Lim, Sung Chul
name: Hwang, Hun-Gyu
name: Shin, Kyeong-Cheol
name: Lee, Heung Bum
name: Kim, Ju Sang
name: Park, Jae Seuk
name: Lee, Sung Soon
name: Koo, Hyeon-Kyoung
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3.
Enzymatic Analysis of Tet Proteins: Key Enzymes in the Metabolism of DNA Methylation
Creators: name: Zhang, Yi
name: Shen, Li
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2012

description: One of the most exciting recent advances in the epigenetic field is the discovery that 5-methylcytosine (5mC) in DNA can be iteratively oxidized by a family of proteins known as Tet proteins to generate 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC), and 5-carboxylcytosine (5caC). These 5mC derivatives can be further processed by thymine-DNA glycosylase (TDG) followed by base excision repair or by replication-dependent dilution leading to DNA demethylation. Given the similarity between 5mC and its oxidation derivatives, many of the conventional techniques used for 5mC analysis cannot distinguish between 5mC and 5hmC/5fC/5caC. Here, we describe 2D-TLC and mass spectrometry methods that we have successfully used in differentiating 5mC from its oxidative derivatives as well as in characterizing the enzymatic activity of Tet proteins both in vitro and in vivo.
Debatten über Ethik & wissenschaft-licheIntegrität in CitizenScience aus metaethischer Perspektive
Creators: name: Strähle, Michael
name: Urban, Christine
Publisher: name: Zenodo
Year: 2021
Subjects: citizen science
EU project
Horizon 2020
H2020

description: Diese Präsentation baut auf 2 Berichten des Projekts CS Track auf –D1.1 und D1.2 -und wurde am 7. Mai 2021 im Rahmen der Konferenz Forum CitizenScience gehalten.
A low-loss, broadband antenna for efficient photon collection from a coherent spin in diamond
Creators: name: Riedel, D.
name: Rohner, D.
name: Ganzhorn, M.
name: Kaldewey, T.
name: Appel, P.
name: Neu, E.
name: Warburton, R. J.
name: Maletinsky, P.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We report the creation of a low-loss, broadband optical antenna giving highly directed output from a coherent single spin in the solid-state. The device, the first solid-state realization of a dielectric antenna, is engineered for individual nitrogen vacancy (NV) electronic spins in diamond. We demonstrate a directionality close to 10. The photonic structure preserves the high spin coherence of single crystal diamond (T2>100us). The single photon count rate approaches a MHz facilitating efficient spin readout. We thus demonstrate a key enabling technology for quantum applications such as high-sensitivity magnetometry and long-distance spin entanglement.
description: 5 pages, 4 figures and supplementary information (5 pages, 8 figures). Comments welcome. Further information under http://www.quantum-sensing.physik.unibas.ch
Debatten über Ethik & wissenschaftliche Integrität in Citizen Science aus metaethischer Perspektive
Creators: name: Strähle, Michael
name: Urban, Christine
Publisher: name: Zenodo
Year: 2021
Subjects: citizen science
EU project
Horizon 2020
H2020

description: Diese Präsentation baut auf 2 Berichten des Projekts CS Track auf - D1.1 und D1.2 - und wurde am 7. Mai 2021 im Rahmen der Konferenz Forum Citizen Science gehalten.
Additional file 4 of Adiposity and mortality among intensive care patients with COVID-19 and non-COVID-19 respiratory conditions: a cross-context comparison study in the UK
Creators: name: Bell, Joshua A.
name: Carslake, David
name: Hughes, Amanda
name: Tilling, Kate
name: Dodd, James W.
name: Doidge, James C.
name: Harrison, David A.
name: Rowan, Kathryn M.
name: Davey Smith, George
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 4: Figure S4 Sex and ethnic group profiles of ICU patients with COVID-19 (5 Feb 2020 to 1 Aug 2021) and non-COVID-19 respiratory conditions (1 Feb 2018 to 31 Aug 2019), by geographical region.