cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1 of Assessment of branch point prediction tools to predict physiological branch points and their alteration by variants
Creators: name: Leman, Raphaël
name: Tubeuf, Hélène
name: Raad, Sabine
name: Tournier, Isabelle
name: Derambure, Céline
name: Lanos, Raphaël
name: Gaildrat, Pascaline
name: Castelain, Gaia
name: Hauchard, Julie
name: Killian, Audrey
name: Baert-Desurmont, Stéphanie
name: Legros, Angelina
name: Goardon, Nicolas
name: Quesnelle, Céline
name: Ricou, Agathe
name: Castera, Laurent
name: Vaur, Dominique
name: Gac, Gérald
name: Ka, Chandran
name: Fichou, Yann
name: Bonnet-Dorion, Françoise
name: Sevenet, Nicolas
name: Guillaud-Bataille, Marine
name: Boutry-Kryza, Nadia
name: Schultz, Inès
name: Caux-Moncoutier, Virginie
name: Rossing, Maria
name: Walker, Logan
name: Spurdle, Amanda
name: Houdayer, Claude
name: Martins, Alexandra
name: Krieger, Sophie
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Additional file 1: Figure S1. Workflow to compare bioinformatics tools on Ensembl and RNA-seq data for the predictions of branch point (BP). Figure S2. The different ways that a variant may alter the branch point score. Figure S3. Running time of the four tools SVM-BPfinder, BPP, Branchpointer, and LaBranchor. Figure S4. Paired comparison of the five tools from the Ensembl data and from the RNA-seq data. Figure S5. The overlap of natural 3′ ss (True Calls) and controls AG (False Calls) from Ensembl data. Figure S6. Splicing junctions filtered out from RNA-seq data. Alt 3’ss: alternative acceptor splice sites. Figure S7. The distribution of the relative expression of alternative 3’ss. Figure S8. The overlap of alternative 3′ ss (True Calls) and controls AG (False Calls) from our RNAseq data. Figure S9. Correlation between the scores (SVM-BPfinder, BPP, Branchpointer, LaBranchoR, RNABPS) and the expression of alternative 3’ss. Figure S10. Repartition of variants (n = 120) according their position relative to the predicted branch point. Figure S11:. Determination of optimal motif (YTRAYNN) length to predict splicing alteration, n = 120 variants. ACC: Accuracy, Pos: relative position in branch point motif, Se: Sensitivity, Sp: Specificity. Figure S12. Cross-validation (1000 times) to select the optimal model to predict branch point alteration. Figure S13. Cross-validation (1000 times) to select the optimal model to predict branch point alteration without the positions of predicted BP for all tools except BPP.
Entretien de Raouf Abdallah al-Sharifayn auprès de Yahya Bani Issa à propos du palais al-Alali de Tibnah
Creators: name: Bani Issa, Yahya
name: Raouf Abdallah Al-Sharifayn (Enquêteur)
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020

description: Source: http://www.calames.abes.fr/pub/ms/FileId-3139
description: Coverage: Irbid, Jordanie
Antonio Dávila, Benito Arias Montano. Apología de la Biblia Regia. Colección de Textos y Estudios Humanísticos "Palmyrenus", Serie Textos XXII, Alcañiz-Lisboa: Instituto de Estudios Humanísticos, 2019. 290 págs. ISBN 978-84-17999-05-6.
Creators: name: Del Pino, Eduardo
Publisher: name: Ágora. Estudos Clássicos em Debate
Year: 2021

description: Ágora. Estudos Clássicos em Debate, No 23 (2021): Ágora. Estudos Clássicos em Debate
Additional file 1 of The complete chloroplast genome of greater duckweed (Spirodela polyrhiza 7498) using PacBio long reads: insights into the chloroplast evolution and transcription regulation
Creators: name: Yating Zhang
name: An, Dong
name: Changsheng Li
name: Zhixuan Zhao
name: Wenqin Wang
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Additional file 1: Table S1. Annotated gene list in the chloroplast of SpV2. Table S2. A comparison of detected introns among model plants. Table S3. The list of RNA editing sites in SpV2. Figure S1. Bioinformatic pipeline of chloroplast genome assembly and annotation. Details are described under Methods. Figure S2. The distribution of RNA editing events in the chloroplast genes of S.polyrhiza. Graph shows the number of currently detected RNA editing sites in protein coding genes. Figure S3. Alignments of editing sites in rpoC2 and ndhA genes. The sequences included RNA editing sites are shown before RNA editing. The amino acid is in orange and substitutions are marked with arrows. The start, RNA editing and end locations are listed above the alignment. All aligned sequences are antisense from the reference except rpoC2 and rpoC1 gene of rice.
Fabio Tanga, Plutarco. La virtù delle donne (Mulierum virtutes). Introduzione, testo critico, traduzione italiana e note di comento, Leiden & Boston, Brill, 2019, lxxx+270 pp. ISBN 978-90-04-40803-6.
Creators: name: Pinheiro, Joaquim
Publisher: name: Ágora. Estudos Clássicos em Debate
Year: 2021

description: Ágora. Estudos Clássicos em Debate, No 23 (2021): Ágora. Estudos Clássicos em Debate
Cheumatopsyche dubitans Mosely 1942
Creators: name: Oláh, János
name: Johanson, Kjell Arne
name: Barnard, Peter C.
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Trichoptera
Hydropsychidae
Cheumatopsyche
Cheumatopsyche dubitans

description: Cheumatopsyche dubitans Mosely, 1942
Fig. 103
 Cheumatopsyche dubitans Mosely, 1942: 352.
 Type locality: CHINA (Fujian).
 New records: VIETNAM: Bac Thai Province, Quang Chu, 24–25.v.1987, light [J. Oláh] — 1 female (OPC, in alcohol); LAOS PDR: Vientiane Prov., Vang Vieng, Nam Xong River, upstream bamboo footbridge, 363 m, UTM 48Q 0223506, 2115465, 26.iv.2005, light trap, loc 10 [N. Jönsson, T. Malm & B. Viklund] — 2 males, 4 females (NRM, in alcohol); LAOS PDR: Luang Phrabang Prov., Nam Khan River, 500 m upstr. Mekong River, 293 m, UTM 48Q 0200517, 2202237, 27.iv.2005, light trap, loc 14 [N. Jönsson, T. Malm & B. Viklund] — 2 females (NRM, in alcohol); LAOS PDR: Luang Namtha Prov. Nam Ha NBCA, Nam Gnang stream, 300 m upstr. Namgnen Village, 558 m, UTM 47Q 0746256, 2321311, 29.iv–1.v.2005, Malaise trap, loc 24 [N. Jönsson, T. Malm & B. Viklund] — 16 males, 21 females (NRM, in alcohol); LAOS PDR: Luang Namtha Prov., Nam Ha NBCA, Lakkhammai Village, Nam Leung stream, 749 m, UTM 47Q 0744602, 2339873, 30.iv.2005, light trap, loc 29 [N. Jönsson, T. Malm & B. Viklund] — 11 males, 105 females (NRM, in alcohol); LAOS PDR: Luang Namtha Prov., Tong Om Village, 552 m, UTM 47Q 0750111, 321825, 1.v.2005, light trap, loc 30 [N. Jönsson, T. Malm & B. Viklund] — 1 male, 3 females (NRM, in alcohol).
description: Published as part of Oláh, János, Johanson, Kjell Arne & Barnard, Peter C., 2008, Revision of the Oriental and Afrotropical species of Cheumatopsyche Wallengren (Hydropsychidae, Trichoptera), pp. 1-171 in Zootaxa 1738 on pages 52-53
RR Lyrae stars in Galactic globular clusters. II. A theoretical approach to variables in M3
Creators: name: Marconi, M.
name: Caputo, F.
name: Di Criscienzo, M.
name: Castellani, M.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present predicted relations connecting pulsational and evolutionary parameters, as based on a wide set of convective pulsating models of RR Lyrae stars with Z=0.001, Y=0.24 and mass and luminosity suitable for the ``old'' (age $>$ 8 Gyr) variables observed in globular clusters. The relations are collated with sound constraints on the mass of pulsators, as inferred from up-to-date evolutionary models of horizontal branch stars, in order to provide a self-consistent theoretical framework for the analysis of observed variables. The theoretical predictions are tested through a detailed comparison with measurements of RR Lyrae stars in the globular cluster M3. We show that the predicted relations satisfy a variety of observed data, thus providing a "pulsational" route to the determination of accurate distances to RR Lyrae-rich globular clusters with intermediate metal content. We discuss the effect of different physical inputs in evolutionary computations, as well as of different bolometric corrections adopted to convert bolometric luminosity into absolute magnitude. We show that the constraints inferred by pulsation theory support the large value of the mixing-length parameter adopted to fit observed RGB, but, at the same time, they would yield that the luminosity of updated HB models is too bright. Such discrepancy is significantly reduced if element diffusion is properly taken into account.
description: 29 pages, 20 postscript figures, accepted for publication on ApJ
Characterizing deposits emplaced by cryovolcanic plumes on Europa
Creators: name: Quick, L. C.
name: Hedman, M. M.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: In the absence of direct observations of Europa's particle plumes, deposits left behind during eruptive events would provide the best evidence for recent geological activity, and would serve as indicators of the best places to search for ongoing activity on the icy moon. Here, we model the morphological and spectral signatures of europan plume deposits, utilizing constraints from recent Hubble Space Telescope observations as model inputs. We consider deposits emplaced by plumes that are 1 km to 300 km tall, and find that in the time between the Galileo Mission and the arrival of the Europa Clipper spacecraft, plumes that are < 7 km tall are most likely to emplace deposits that could be detected by spacecraft cameras. Deposits emplaced by larger plumes could be detected by cameras operating at visible wavelengths provided that their average particle size is sufficiently large, their porosity is high, and/or they are salt-rich. Conversely, deposits emplaced by large plumes could be easily detected by near-IR imagers regardless of porosity, or individual particle size or composition. If low-albedo deposits flanking lineated features on Europa are indeed cryoclastic mantlings, they were likely emplaced by plumes that were less than 4 km tall, and deposition could be ongoing today. Comparisons of the sizes and albedos of these deposits between the Galileo and Europa Clipper missions could shed light on the size and frequency of cryovolcanic eruptions on Europa.
description: 50 pages, 12 Figures, accepted for publication in Icarus
Hybrid Top-Down and Bottom-Up Approach for Investigating Residential Load Compositions and Load Percentages
Creators: name: Alahmed, Ahmed S.
name: Almuhaini, Muhammed M.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Systems and Control (eess.SY)
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: Load points are one of the most vital parts of power systems. Due to the new load forms and programs introduced in the demand side, the load-serving entities (LSEs) no longer deal with lump loads, but rather with more dynamic, rational and price elastic loads. The high inter-temporal and behavioral variability of the load profile makes it almost impossible for utilities and system operators to expect the demand curve with the needed accuracy. A sound granularity of the load compositions and consumption percentages and patterns throughout the year is essential for avoiding energy losses, designing demand-side management programs, and ensuring proper adjustments of electricity rates. In this paper, a simplistic model that can be followed by system operators to initially understand the customers' consumption pattern and the household load structure is proposed. A top-down approach is combined and matched with a detailed bottom-up one, to extract load compositions and percentages. Real and local load profiles integrated with household statistical data such as device time of use (ToU), number of device units per house, and activities exercised in households are all included in the model. The main results of the paper show the load composition in residential demand and the percentage of such composition under seasonal-based scenarios.
description: 6 pages, 6 figures
Fast two-bit operations in inductively coupled flux qubits
Creators: name: You, J. Q.
name: Nakamura, Y.
name: Nori, Franco
Publisher: name: arXiv
Year: 2003
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: A central problem for implementing efficient quantum computing is how to realize fast operations (both one- and two-bit ones). However, this is difficult to achieve for a collection of qubits, especially for those separated far away, because the interbit coupling is usually much weaker than the intrabit coupling. Here we present an experimentally feasible method to effectively couple two flux qubits via a common inductance and treat both single and coupled flux qubits with more realistic models which include the loop inductance. The main advantage of our proposal is that a strong interbit coupling can be achieved using a small inductance, so that two-bit operations as fast as one-bit ones can be easily realized. We also show the flux dependence of the transitions between states for the coupled flux qubits.
description: 10 pages, 7 figures
Cheumatopsyche falcifera
Creators: name: Oláh, János
name: Johanson, Kjell Arne
name: Barnard, Peter C.
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Trichoptera
Hydropsychidae
Cheumatopsyche
Cheumatopsyche falcifera

description: Cheumatopsyche falcifera (Ulmer, 1930)
Fig. 104
 Hydropsychodes falcifera Ulmer, 1930a: 482.
 Cheumatopsyche falcifera (Ulmer, 1930); Mosely 1939: 27.
 Cheumatopsyche zuluensis (Barnard, 1934); Kimmins 1960: 257.
 Type locality: Uganda.
 New Record: GHANA: Kwadaso, 10.xii.1967, light [S. Endrödy] — 1 male; GHANA: Kwadaso, 5.v.1969, light [S. Endrödy] — 4 males (HNHM, in alcohol); GHANA: Kwadaso, 2.vi.1969, light [S. Endrödy] — 1 male (HNHM, in alcohol); GHANA: Kwadaso, 9.vi.1969, light [S. Endrödy] — 3 males (HNHM); GHANA: Kwadaso, 23.vi.1969, light [S. Endrödy] — 3 males. (OPC, in alcohol).
description: Published as part of Oláh, János, Johanson, Kjell Arne & Barnard, Peter C., 2008, Revision of the Oriental and Afrotropical species of Cheumatopsyche Wallengren (Hydropsychidae, Trichoptera), pp. 1-171 in Zootaxa 1738 on page 54
Entomobrya nigrocincta Denis 1923
Creators: name: Thibaud, Jean-Marc
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Entomobryidae
Entomobrya
Entomobrya nigrocincta

description: Entomobrya nigrocincta Denis, 1923 *
Entomobrya nigrocincta Denis, 1923a: 54.
DISTRIBUTION. — Hérault. Montpellier (Denis 1923b).
TAXONOMIE. — Denis 1923b (syn. E. atrocincta).
description: Published as part of Thibaud, Jean-Marc, 2017, Catalogue des collemboles de France, pp. 297-436 in Zoosystema 39 (3) on page 379, DOI: 10.5252/z2017n3a1, http://zenodo.org/record/5496272
Influence of flicker noise and nonlinearity on the frequency spectrum of spin torque nano-oscillators
Creators: name: Wittrock, Steffen
name: Talatchian, Philippe
name: Tsunegi, Sumito
name: Crété, Denis
name: Yakushiji, Kay
name: Bortolotti, Paolo
name: Ebels, Ursula
name: Fukushima, Akio
name: Kubota, Hitoshi
name: Yuasa, Shinji
name: Grollier, Julie
name: Cibiel, Gilles
name: Galliou, Serge
name: Rubiola, Enrico
name: Cros, Vincent
Publisher: name: arXiv
Year: 2020
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The correlation of phase fluctuations in any type of oscillator fundamentally defines its spectral shape. However, in nonlinear oscillators, such as spin torque nano oscillators, the frequency spectrum can become particularly complex. This is specifically true when not only considering thermal but also colored $1/f$ flicker noise processes, which are crucial in the context of the oscillator's long term stability. In this study, we address the frequency spectrum of spin torque oscillators in the regime of large-amplitude steady oscillations experimentally and as well theoretically. We particularly take both thermal and flicker noise into account. We perform a series of measurements of the phase noise and the spectrum on spin torque vortex oscillators, notably varying the measurement time duration. Furthermore, we develop the modelling of thermal and flicker noise in Thiele equation based simulations. We also derive the complete phase variance in the framework of the nonlinear auto-oscillator theory and deduce the actual frequency spectrum. We investigate its dependence on the measurement time duration and compare with the experimental results. Long term stability is important in several of the recent applicative developments of spin torque oscillators. This study brings some insights on how to better address this issue.
Miguel Ángel González Manjarrés (ed.), Praxi theoremata coniungamus. Amato Lusitano y la medicina de su tiempo. Salamanca: Guillermo Escolar Editor, 2019, 368 pp.; ISBN: 978-84-17134-95-2.
Creators: name: Oliveira, Emília M. Rocha De
Publisher: name: Ágora. Estudos Clássicos em Debate
Year: 2021

description: Ágora. Estudos Clássicos em Debate, No 23 (2021): Ágora. Estudos Clássicos em Debate
Lepton interferometry in relativistic heavy ion collisions - a case study
Creators: name: Alam, Jan-e
name: Mohanty, Bedangadas
name: Rahaman, A.
name: Sarkar, Sourav
name: Sinha, Bikash
Publisher: name: arXiv
Year: 2004
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We propose intensity interferometry with identical lepton pairs as an efficient tool for the estimation of the source size of the expanding hot zone produced in relativistic heavy ion collisions. This can act as a complementary method to two photon interferometry. The correlation function of two electrons with the same helicity has been evaluated for RHIC energies. The thermal shift of the rho meson mass has negligible effects on the HBT radii.
description: 5 pages and 2 figures
Additional file 1 of Magnitude of Khat use and associated factors among women attending antenatal care in Gedeo zone health centers, southern Ethiopia: a facility based cross sectional study
Creators: name: Birhanie Mekuriaw
name: Zelalem Belayneh
name: Yimenu Yitayih
Publisher: name: figshare
Year: 2020
Subjects: subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Cancer

description: Additional file 1. Interview guide used for the data collection.
Recombining WMAP: constraints on ionizing and resonance radiation at recombination
Creators: name: Bean, Rachel
name: Melchiorri, Alessandro
name: Silk, Joe
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We place new constraints on sources of ionizing and resonance radiation at the epoch of the recombination process using the recent CMB temperature and polarization spectra coming from WMAP. We find that non-standard recombination scenarios are still consistent with the current data. In light of this we study the impact that such models can have on the determination of several cosmological parameters. In particular, the constraints on curvature and baryon density appear to be weakly affected by a modified recombination scheme. However, it may affect the current WMAP constraints on inflationary parameters like the spectral index and its running. Physically motivated models, like those based on primordial black hole or super heavy dark matter decay, are able to provide a good fit to the current data. Future observations in both temperature and polarization will be needed to more stringently test these models.
description: 6 pages, 7 figures. Replaced with version accepted by Physical Review D
Gregorio Rodríguez Herrera (ed.), Florilegios latinos y sociedad. Vigo: Editorial Academia del Hispanismo, 2020, 274 pp.; ISBN: 978-84-17696-33-7.
Creators: name: Oliveira, Emília M. Rocha De
Publisher: name: Ágora. Estudos Clássicos em Debate
Year: 2021

description: Ágora. Estudos Clássicos em Debate, No 23 (2021): Ágora. Estudos Clássicos em Debate
Cheumatopsyche fansipangensis Mey 1996
Creators: name: Oláh, János
name: Johanson, Kjell Arne
name: Barnard, Peter C.
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Trichoptera
Hydropsychidae
Cheumatopsyche
Cheumatopsyche fansipangensis

description: Cheumatopsyche fansipangensis Mey, 1996
 Cheumatopsyche fansipangensis Mey, 1996: 64.
 Type locality: Vietnam.
description: Published as part of Oláh, János, Johanson, Kjell Arne & Barnard, Peter C., 2008, Revision of the Oriental and Afrotropical species of Cheumatopsyche Wallengren (Hydropsychidae, Trichoptera), pp. 1-171 in Zootaxa 1738 on page 54
Engineering metal-$sp_{xy}$ Dirac bands on the oxidized SiC surface
Creators: name: de Lima, F. Crasto
name: Miwa, R. H.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: The ability to construct 2D systems, beyond materials natural formation, enriches the search and control capability of new phenomena. For instance, the synthesis of topological lattices of vacancies on metal surfaces through scanning tunneling microscopy. In the present study we demonstrate that metal atoms encaged in silicate adlayer on silicon carbide is an interesting platform for lattices design, providing a ground to experimentally construct tight-binding models on an insulating substrate. Based on the density functional theory, we have characterized the energetic and the electronic properties of 2D metal lattices embedded in the silica adlayer. We show that the characteristic band structures of those lattices are ruled by surface states induced by the metal-$s$ orbitals coupled by the host-$p_{xy}$ states; giving rise to $sp_{xy}$ Dirac bands neatly lying within the energy gap of the semiconductor substrate.
Deconfinement and phase diagram of bosons in a linear optical lattice with a particle reservoir
Creators: name: Majumdar, Kingshuk
name: Fertig, H. A.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Atomic Physics (physics.atom-ph)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We investigate the zero-temperature phases of bosons in a one-dimensional optical lattice with an explicit tunnel coupling to a Bose condensed particle reservoir. Renormalization group analysis of this system is shown to reveal three phases: one in which the linear system is fully phase-locked to the reservoir; one in which Josephson vortices between the one-dimensional system and the particle reservoir deconfine due to quantum fluctuations, leading to a decoupled state in which the one-dimensional system is metallic; and one in which the one-dimensional system is in a Mott insulating state.
description: Revised version. Four pages and three figures. To appear in Phys. Rev. Lett
Additional file 1 of Discussing overweight in children during a regular consultation in general practice: a qualitative study
Creators: name: Maas, Joline
name: Corbee, Ronald
name: Kroese, Floor
name: Ridder, Denise
name: Rimke Vos
name: Nielen, Mirjam
name: Monninkhof, Evelyn
Publisher: name: figshare
Year: 2020
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Computational Biology

description: Additional file 1: Questionaire. Semi-structured in-depth interview
Frederico Lourenço (ed.), Latim do Zero a Vergílio em 50 Lições. Lisboa: Quetzal Editores, 2020, 925 pp.; ISBN: 978-989-722-702-8.
Creators: name: Oliveira, Emília M. Rocha De
Publisher: name: Ágora. Estudos Clássicos em Debate
Year: 2021

description: Ágora. Estudos Clássicos em Debate, No 23 (2021): Ágora. Estudos Clássicos em Debate
Generalized additive bases, Konig's lemma, and the Erdos-Turan conjecture
Creators: name: Nathanson, Melvyn B.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Number Theory (math.NT)
subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: 11B13, 11B34, 11B05

description: Let A be a set of nonnegative integers. For every nonnegative integer n and positive integer h, let r_{A}(n,h) denote the number of representations of n in the form n = a_1 + a_2 + ... + a_h, where a_1, a_2,..., a_h are elements of A and a_1 \leq a_2 \leq ... \leq a_h. The infinite set A is called a basis of order h if r_{A}(n,h) \geq 1 for every nonnegative integer n. Erdos and Turan conjectured that limsup_{n\to\infty} r_A(n,2) = \infty for every basis A of order 2. This paper introduces a new class of additive bases and a general additive problem, a special case of which is the Erdos-Turan conjecture. Konig's lemma on the existence of infinite paths in certain graphs is used to prove that this general problem is equivalent to a related problem about finite sets of nonnegative integers.
description: 8 pages. LaTex. Some new results have been added and some typos corrected
On the dynamics characterization of complex projective spaces
Creators: name: Banik, Mita
Publisher: name: arXiv
Year: 2019
Subjects: subject: Symplectic Geometry (math.SG)
subject: FOS: Mathematics
subject: 53D40, 53D45

description: We show that a closed weakly-monotone symplectic manifold of dimension $2n$ which has minimal Chern number greater than or equal to $n+1$ and admits a Hamiltonian toric pseudo-rotation is necessarily monotone and its quantum homology is isomorphic to that of the complex projective space. As a consequence when $n=2$, the manifold is symplectomorphic to $\mathbb{C}P^2$.
description: 7 pages
Additional file 2 of Polymorphic markers for identification of parasite population in Plasmodium malariae
Creators: name: Mathema, Vivek
name: Supatchara Nakeesathit
name: Watcharee Pagornrat
name: Smithuis, Frank
name: White, Nicholas
name: Dondorp, Arjen
name: Imwong, Mallika
Publisher: name: figshare
Year: 2020
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2. Schematic diagram of partial pmmsp1 gene amplification and VNTR alleles alignment. The diagram is representative of 14 alleles aligned to the partially sequenced pmmsp1 gene reference sequence (Accession no. FJ824669) using pmmsp1 marker described in TableÂ 2. VNTR, variable number of tandem repeats; pmmsp1, Plasmodium malariae merozoite surface protein 1.
Natural Philosophy versus Philosophy of Naturalness
Creators: name: Senjanovic, Goran
Publisher: name: arXiv
Year: 2020
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: High Energy Physics - Theory (hep-th)
subject: History and Philosophy of Physics (physics.hist-ph)
subject: FOS: Physical sciences

description: I reflect on some of the basic aspects of present day Beyond the Standard Model particle physics, focusing mostly on the issues of naturalness, in particular on the so-called hierarchy problem. To all of us, physics as natural science emerged with Galileo and Newton, and led to centuries of unparalleled success in explaining and often predicting new phenomena of nature. I argue here that the long standing obsession with the hierarchy problem as a guiding principle for the future of our field has had the tragic consequence of deviating high energy physics from its origins as natural philosophy, and turning it into a philosophy of naturalness.
description: Loosely based on the closing talk of the International conference 'LHC Days in Split 2018', September 2018, Split, Croatia
Virgílio, Eneida. Tradução, introdução e anotações de Carlos Ascenso André. Lisboa, Edições Cotovia, 2020. ISBN 978-972-795-398-1. 431 p.
Creators: name: Pereira, Virgínia Soares
Publisher: name: Ágora. Estudos Clássicos em Debate
Year: 2021

description: Ágora. Estudos Clássicos em Debate, No 23 (2021): Ágora. Estudos Clássicos em Debate
Mapping the 3-D dark matter with weak lensing in COMBO-17
Creators: name: Taylor, A. N.
name: Bacon, D. J.
name: Gray, M. E.
name: Wolf, C.
name: Meisenheimer, K.
name: Dye, S.
name: Borch, A.
name: Kleinheinrich, M.
name: Kovacs, Z.
name: Wisotzki, L.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present a 3-dimensional lensing analysis of the z=0.16 supercluster A901/2, resulting in a 3-D map of the dark matter distribution within a 3 X 10^{5} [Mpc]^3 volume from the COMBO-17 survey. We perform a chi^2-fit of isothermal spheres to the tangential shear pattern around each cluster as a function of redshift to estimate the 3-D positions and masses of the main clusters in the supercluster from lensing alone. We then present the first 3-D map of the dark matter gravitational potential field, Phi, using the Kaiser-Squires (1993) and Taylor (2001) inversion methods. These maps clearly show the potential wells of the main supercluster components, including a new cluster behind A902, and demonstrates the applicability of 3-D dark matter mapping and projection free-mass-selected cluster finding to current data. Finally, we develop the halo model of dark matter and galaxy clustering and compare this with the auto-and cross-correlation functions of the 3-D gravitational potential, galaxy number densities and galaxy luminosity densities measured in the A901/2 field. We find significant anti-correlations between the gravitational potential field and the galaxy number density and luminosities, as expected due to baryonic infall into dark matter concentrations. We find good agreement with the halo model for the number densities and luminosity correlation functions.
description: Submitted to MNRAS; 21 pages, 18 figures
M$^2$-Spectral Estimation: A Flexible Approach Ensuring Rational Solutions
Creators: name: Zhu, Bin
name: Ferrante, Augusto
name: Karlsson, Johan
name: Zorzi, Mattia
Publisher: name: arXiv
Year: 2020
Subjects: subject: Optimization and Control (math.OC)
subject: Signal Processing (eess.SP)
subject: FOS: Mathematics
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: 42A70, 30E05, 47A57, 60G12

description: This paper concerns a spectral estimation problem for multivariate (i.e., vector-valued) signals defined on a multidimensional domain, abbreviated as M$^2$. The problem is posed as solving a finite number of trigonometric moment equations for a nonnegative matricial measure, which is well known as the \emph{covariance extension problem} in the literature of systems and control. This inverse problem and its various generalizations have been extensively studied in the past three decades, and they find applications in diverse fields such as modeling and system identification, signal and image processing, robust control, circuit theory, etc. In this paper, we address the challenging M$^2$ version of the problem, and elaborate on a solution technique via convex optimization with the $τ$-divergence family. As a major contribution of this work, we show that by properly choosing the parameter of the divergence index, the optimal spectrum is a rational function, that is, the solution is a spectral density which can be represented by a finite-dimensional system, as desired in many practical applications.
description: 20 Pages in SIAM template, no figures
Constraints on a scalar-pseudoscalar Higgs mixing at future e+e- colliders: an update
Creators: name: Chalov, A.
name: Likhoded, A.
name: Rosenfeld, R.
Publisher: name: arXiv
Year: 2004
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We perform an update of our previous analysis on the constraints on possible deviations of Hbb coupling from its Standard Model value, arising from a scalar-pseudoscalar mixing. In this paper we include a complete simulation of the process e+ e- -> b bbar e+ e- and combine it with our previous results to obtain tighter bounds on the deviations of the parameters describing this coupling that could be measured at the Next Linear Collider.
description: 3 pages, 2 figures, to be submitted to Phys. Rev. D
$L^p$-trace-free generalized Korn inequalities for incompatible tensor fields in three space dimensions
Creators: name: Lewintan, Peter
name: Neff, Patrizio
Publisher: name: arXiv
Year: 2020
Subjects: subject: Analysis of PDEs (math.AP)
subject: FOS: Mathematics
subject: Primary: 35A23, Secondary: 35B45, 35Q74, 46E35

description: For $10$ such that \[ \|{ P }\|_{L^p(Ω,\mathbb{R}^{3\times3})}\leq c\,\left(\|{\operatorname{dev} \operatorname{sym} P }\|_{L^p(Ω,\mathbb{R}^{3\times3})} + \|{ \operatorname{dev} \operatorname{Curl} P }\|_{L^p(Ω,\mathbb{R}^{3\times3})}\right) \] holds for all tensor fields $P\in W^{1,\,p}_0(\operatorname{Curl}; Ω,\mathbb{R}^{3\times3})$, i.e., for all $P\in W^{1,\,p}(\operatorname{Curl}; Ω,\mathbb{R}^{3\times3})$ with vanishing tangential trace $ P\times ν=0 $ on $ \partialΩ$ where $ν$ denotes the outward unit normal vector field to $\partialΩ$ and $\operatorname{dev} P := P -\frac13 \operatorname{tr}(P)\,\mathbb{1}_3$ denotes the deviatoric (trace-free) part of $P$. We also show the norm equivalence \[ \|{ P }\|_{L^p(Ω,\mathbb{R}^{3\times3})}+\|{\operatorname{Curl} P }\|_{L^p(Ω,\mathbb{R}^{3\times3})}\leq c\,\left(\|{\operatorname{dev} \operatorname{sym} P }\|_{L^p(Ω,\mathbb{R}^{3\times3})} + \|{ \operatorname{dev}\operatorname{Curl} P }\|_{L^p(Ω,\mathbb{R}^{3\times3})}\right) \] for tensor fields $P\in W^{1,\,p}_0(\operatorname{Curl}; Ω,\mathbb{R}^{3\times3})$. These estimates also hold true for tensor fields with vanishing tangential trace only on a relatively open (non-empty) subset $Γ\subseteq \partialΩ$ of the boundary.
Additional file 1 of Polymorphic markers for identification of parasite population in Plasmodium malariae
Creators: name: Mathema, Vivek
name: Supatchara Nakeesathit
name: Watcharee Pagornrat
name: Smithuis, Frank
name: White, Nicholas
name: Dondorp, Arjen
name: Imwong, Mallika
Publisher: name: figshare
Year: 2020
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Table S1. Genome-wide coverage and density of microsatellites in genome of five human malaria causing Plasmodium species. Table S2. Number and geographical origin of Plasmodium species and strains used in the present study. Table S3. Sensitivity and specificity estimates of the markers in method development.
Smoothed Particle Magnetohydrodynamics (some shocking results...)
Creators: name: Price, D. J.
name: Monaghan, J. J.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: There have been some issues in the past in attempts to simulate magnetic fields using the Smoothed Particle Hydrodynamics (SPH) method. SPH is well suited to star formation problems because of its Lagrangian nature. We present new, stable and conservative methods for magnetohydrodynamics (MHD) in SPH and present numerical tests on both waves and shocks in one dimension to show that it gives robust and accurate results.
description: Kluwer latex, 6 pages, 3 figures; Proceedings of the International Workshop "Magnetic Fields and Star Formation: Theory vs Observations", Madrid, 21-25 April 2003. Revised version accepted to proceedings (exact solutions added, other minor changes)
Additional file 4 of Development and characterization of Escherichia coli triple reporter strains for investigation of population heterogeneity in bioprocesses
Creators: name: Anna-Lena Heins
name: Reyelt, Jan
name: Schmidt, Marlen
name: Kranz, Harald
name: Weuster-Botz, Dirk
Publisher: name: figshare
Year: 2020
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer

description: Additional file 4. Single cell physiology of the triple reporter strains in response to combined perturbation with glucose and oxygen.
Entomobrya pyrenaica Cassagnau 1964
Creators: name: Thibaud, Jean-Marc
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Entomobryidae
Entomobrya
Entomobrya pyrenaica

description: Entomobrya pyrenaica Cassagnau, 1964 **
Entomobrya pyrenaica Cassagnau, 1964a: 466.
DISTRIBUTION. — Hautes-Pyrénées. Cirquede Gavarnie, Orédon, Estibère, massif du Néouvielle, 1000-3000 m (Cassagnau 1964a).
description: Published as part of Thibaud, Jean-Marc, 2017, Catalogue des collemboles de France, pp. 297-436 in Zoosystema 39 (3) on page 380, DOI: 10.5252/z2017n3a1, http://zenodo.org/record/5496272
Le groupe de Chow d'une surface de Ch{â}telet
Creators: name: Dalawat, Chandan Singh
Publisher: name: arXiv
Year: 2003
Subjects: subject: Algebraic Geometry (math.AG)
subject: Number Theory (math.NT)
subject: FOS: Mathematics
subject: 11G25,14C15, 14G20, 14J26

description: Colliot-Th{é}l{è}ne has determined the Chow group of zero-cycles on a Ch{â}telet surface X defined over a finite extension K of the field of p-adic numbers (p an odd prime) when X is split by an unramified extension of K. Using similar techniques, we extend this calculation to the ramified case, simplifying his result in the process. We also determine how this group changes when we pass from K to a finite extension of K.
description: 14 pages
Habitable zones around almost extremely spinning black holes (black sun revisited)
Creators: name: Bakala, Pavel
name: Docekal, Jan
name: Turonova, Zuzana
Publisher: name: arXiv
Year: 2020
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We analyzed the thermodynamics of hypothetical exoplanets at very low Keplerian circular orbits in close vicinity of rapidly spinning supermassive black holes. Such black hole exoplanets are heated by strongly blueshifted and focused flux of the incoming cosmic microwave background (CMB) and cooled by the cold part of the local sky containing the black hole shadow. This gives rise to a temperature difference, which can drive processes far from thermodynamic equilibrium in a hypothetical life form inhabiting black hole exoplanets, similar to the case of a planet heated by the radiation of the parent star and cooled by the night sky. We found that for a narrow range of radii of very low Keplerian circular orbits and for very high spin of a supermassive black hole, the temperature regime of the black hole exoplanets corresponds to the habitable zone around standard stars. The thermodynamics of black hole exoplanets therefore, in principle, does not exclude the existence of life based on known biology. The peak of the multiblackbody spectral profile of the CMB heating the exoplanet is located in the ultraviolet band, but a significant fraction of the flux comes also in the visible and infrared bands. The minimum mass of a black hole ensuring the resistance to tidal disruption of an Earth-like exoplanet orbiting in the habitable zone is estimated to $1.63 \cdot 10^8 \, m_{\odot}$.
description: 13 pages, 7 figures
Additional file 6 of Epidemiology of intestinal parasitic infections in preschool and school-aged Ethiopian children: a systematic review and meta-analysis
Creators: name: Legese Chelkeba
name: Zeleke Mekonnen
name: Yonas Alemu
name: Emana, Daniel
Publisher: name: figshare
Year: 2020
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 6. Forest plot showing prevalence intestinal parasite infections with single species of parasite among Ethiopian children.
BeppoSAX observations of the accretion-powered X-ray pulsar SMC X-1
Creators: name: Naik, S.
name: Paul, B.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present here results obtained from three BeppoSAX observations of the accretion-powered X-ray pulsar SMC X-1 carried out during the declining phases of its 40--60 days long super-orbital period. Timing analysis of the data clearly shows a continuing spin-up of the neutron star. Energy-resolved timing analysis shows that the pulse-profile of SMC X-1 is single peaked at energies less than 1.0 keV whereas an additional peak, the amplitude of which increases with energy within the MECS range, is present at higher energies. Broad-band pulse-phase-averaged spectroscopy of the BeppoSAX data, which is done for the first time since its discovery, shows that the energy spectrum in the 0.1--80 keV energy band has three components, a soft excess that can be modeled as a thermal black-body, a hard power-law component with a high-energy exponential cutoff and a narrow and weak iron emission line at 6.4 keV. Pulse-phase resolved spectroscopy indicates a pulsating nature of the soft spectral component, as seen in a few other binary X-ray pulsars, with a certain phase offset with respect to the hard power-law component. Dissimilar shape and phase of the soft and hard X-ray pulse profiles suggest a different origin of the soft and hard components.
description: 8 Pages, 6 figures, Accepted for publication in A&A
Entomobrya quinquelineata Borner 1901
Creators: name: Thibaud, Jean-Marc
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Entomobryidae
Entomobrya
Entomobrya quinquelineata

description: Entomobrya quinquelineata Börner, 1901
Entomobrya quinquelineata Börner, 1901b: 69.
DISTRIBUTION. — Hautes-Pyrénées. Hautevalléedel’Aureetmassif du Néouvielle (Lauga-Reyrel & Lauga 1995).
Isère. Glacier de Freydanne, massif de Belledonne (Vaillant 1956).
ÉCOLOGIE. — Vaillant 1956 (faune hygropétrique).
description: Published as part of Thibaud, Jean-Marc, 2017, Catalogue des collemboles de France, pp. 297-436 in Zoosystema 39 (3) on page 380, DOI: 10.5252/z2017n3a1, http://zenodo.org/record/5496272
Multiwavelength Observation of WIMP Annihilation
Creators: name: Aloisio, Roberto
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The annihilation of neutralino dark matter may result in observable signals in different wavelength. In the present paper we will discuss the effect of neutralino annihilation in the halo of our Galaxy and in its center. According to high resolution cold dark matter simulations, large virialized halos are formed through the constant merging of smaller halos appeared at previous times. At each epoch, dark matter halos have then a clumpy component which is made of these merging subhalos. The annihilation of dark matter in these clumps, always present in the halo of our Galaxy, may be responsible for appreciable fluxes of $γ$-rays, potentially detectable. We find that, depending on the fundamental parameters of the clump density profile and on the distribution of clumps in the Galactic halo, the contribution to the diffuse $γ$-ray background from clumps could be used to obtain constraints on the neutralino properties such as mass and annihilation cross section. On the other hand the annihilation of neutralino dark matter in the galactic center may result in radio signals. At the galactic center, infact, the accretion flow onto the central black hole sustains strong magnetic fields that can induce synchrotron emission, in the radio wavelength, by electrons and positrons generated in neutralino annihilations during advection onto the black hole. We find that the observed emission from the galactic center is consistent with neutralinos following a Navarro Frenk and White density profile at the galactic center while it is inconsistent with the presence of a spike density profile, supposed to be generated by the formation history of the central black hole.
description: 20 pages, 10 figure, talk given at the 10th Marcel Grossman Meeting (Rio de Janeiro, July 20 - 26, 2003)