cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Dystrophica Epidermolysis Bullosa_ Part 1 _ Genome Disfunction Review
Creators: name: Yildiz, Elmas
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 310509
subject: Genomics
classificationCode: 320213
subject: Medical genetics (excl. cancer genetics)

description: Epidermolysis Bullosa is a genetically inherited disorder that renders the skin highly vulnerable, with even gentle contact resulting in blistering and injury. The term "epidermolysis" reflects the skin’s predisposition to separation and damage, while "bullosa" refers to the formation of fluid-filled blisters. Among those affected by Dystrophic Epidermolysis Bullosa, a subtype of EB, the skin’s fragility is profound enough to merit the nickname "butterfly children" for young patients, as their skin is as delicate as a butterfly. This genetic defect is not limited to the skin’s exterior; it also manifests in the body’s internal anatomy, often leading to complications such as a narrow esophagus which leads to increased risk of aspiration, and difficulty swallowing, corneal wounds, and pseudosyndactyly (mitten-like hand deformity) of the hands and feet. Keywords: Epidermolysis Bullosa, Epidermolysis Bullosa Dystrophic, COL7A1 gene, VII collagen
title: The Antiquity and the Renaissance in Heitor Pinto
Creators: name: Pereira, António dos Santos
Publisher: name: CHAM - Centro de História de Além-Mar, Faculdade de Ciências Sociais e Humanas, Universidade NOVA de Lisboa
Year: 2012

description: The whole classical heritage shows up in Imagem da Vida Cristã. A first look reveals that Heitor Pinto has read all the classical authors directly, but he has also, in fact, used the best handbooks (those elaborated in Antiquity, as well as those elaborated in the Renaissance) to further his knowledge on the themes of Humanism and Christian theology. At the same time, he read the most relevant propositions in a dialectical way: knowledge of himself and of external reality; life and death; man and God. A philosopher and theologian, he seems however to have cultivated a true passion for History, Geography, and Nature in general. In the texts, all things have an inherent symbolism, and every text uses many sources on different areas of knowledge, such as mythology, numerology, the Bible, art, geography, and so on, in order to discover the truth.
description: Pereira, António dos Santos (2012). The Antiquity and the Renaissance in Heitor Pinto. Res Antiquitatis. Journal of Ancient History, 3, pp. 71-99. ISSN: 1647-5852
Modellierung Und Erfassung Von Kompetenzen Naturwissenschaftlicher Erkenntnisgewinnung Bei (Lehramts-)Studierenden Im Fach Physik
Creators: name: Straube, Philipp
Publisher: name: Zenodo
Year: 2016
Subjects: Physikstudium
Physikdidaktik
Erkenntnisgewinnung
Kompetenzmodell
Kompetenztest

description: Für Studiengänge an deutschen Hochschulen wird heute meistens eine Orientierung an Kompetenzen eingefordert. Die zur Messung dieser Kompetenzen nötigen Testinstrumente fehlen aber weitestgehend. Im Kooperationsprojekt „Ko-WADiS“, in dem diese Studie angesiedelt war, wurde ein Kompetenztest zur Naturwissenschaftlichen Erkenntnisgewinnung entwickelt. Erkenntnisgewinnung wird dabei als ein komplexer Problemlöseprozess im Sinne des Scientific Reasoning angesehen. Auf Grundlage dieser theoretischen Überlegungen wurden zunächst ein Kompetenzmodell adaptiert und Items entwickelt. Für diese Studie wurde der Kompetenztest in einer querschnittlichen Untersuchung bei Studierenden der Physik eingesetzt.

Die empirischen Ergebnisse deuten auf die beste Passung eines eindimensionalen Modells hin. Auf Basis dieses Modells wurden weitere Analysen vorgenommen. Hierbei wird deutlich, dass erwartungskonform Masterstudierende einen höheren Kompetenzstand als Bachelorstudierende haben. Gleichzeitig gibt es Evidenz für einen signifikanten Vorteil der Fachstudierenden im Vergleich zu den Lehramtsstudierenden. Keine Vorteile zeigen sich hingegen für Lehramtsstudierende der Physik mit einem weiteren naturwissenschaftlichen Fach.
title: The trace of Osiris
title: The Egyptian Myth in the Spanish Monarchy of Philip II
titleType: Subtitle
Creators: name: Garcia i Marrasé, Elizabeth
Publisher: name: CHAM - Centro de História de Além-Mar, Faculdade de Ciências Sociais e Humanas, Universidade NOVA de Lisboa
Year: 2012

description: The presence of ancient Egypt in Philip II’s time is located in the frame of the Egyptian myth reception during the second half of the 16th century Spanish Monarchy. Succinctly, the article studies how was articulated this reception and searches the so-called trace of Osiris: a trace drawn on Hispanic context through various contours. This fact led to a complex perception of Egypt, which was reflected in fields as diverse as mythical genealogies, historiography, studies on hieroglyphs and royal events related to the House of Austria. A completely transformed Egypt from its primeval canons, filtered by Greco-Latin sources, corrupted by the Biblical tradition; undermined by the Renaissance ideas; and interfered by Hermetic connotations. All in all, an egyptianizing Egypt which was installed in the symbolical and political culture of the Spanish Crown, playing a specific role in the propaganda and commemorative exercises of the Rey Prudente and contributing to profile his royal image.
description: Garcia i Marrasé, Elizabeth (2012). The trace of Osiris: The Egyptian Myth in the Spanish Monarchy of Philip II. Res Antiquitatis. Journal of Ancient History, 3, pp. 101-119. ISSN: 1647-5852
title: Clean substitutes and the effectiveness of carbon foot print labels vs. Pigovian subsidies: evidence from a field experiment
Creators: name: Lanz, Bruno
name: Wurlod, Jules-Daniel
name: Panzone, Luca A.
name: Swanson, Timothy M
Publisher: name: Graduate Institute of International and Development Studies
publisherIdentifier: https://ror.org/007ygn379
publisherIdentifierScheme: ROR
Year: 2014

description: CIES Research Paper ; no. 32
Supplemental Material - A longitudinal investigation of PTSD symptoms, hazardous drinking, and relationship satisfaction in college student dating relationships
Creators: name: Mackey, Chelsea D.
name: Schultz, Megan E.
name: Nguyen, Kristina H.
name: Mettert, Kayne D.
name: Bernabe, Almira Mae
name: Garcia, Melissa
name: Jaffe, Anna E.
name: Larimer, Mary E.
Publisher: name: SAGE Journals
Year: 2024
Subjects: Communication and Media Studies not elsewhere classified
Psychology not elsewhere classified

description: Supplemental Material for A longitudinal investigation of PTSD symptoms, hazardous drinking, and relationship satisfaction in college student dating relationships by Chelsea D. Mackey, Megan E. Schultz, Kristina H. Nguyen, Kayne D. Mettert, Almira Mae Bernabe, Melissa Garcia, Anna E. Jaffe and Mary E. Larimer in Journal of Social and Personal Relationships.
Supplemental Material - Deucravacitinib and shikonin combination therapy ameliorates imiquimod-induced psoriasis in mice
Creators: name: Xu, Ling
name: Jiang, Ying
name: Xu, Fuping
name: Liu, Jun
name: Jiang, Yuhong
name: Fang, Fang
name: Luo, Lin
Publisher: name: SAGE Journals
Year: 2024
Subjects: subject: Medicine
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Aged Health Care
subject: Paediatrics
subject: Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: Respiratory Diseases
subject: Veterinary Medicine
subject: Cell Biology
subject: Biochemistry
subject: Biological Sciences not elsewhere classified

description: Supplemental Material for Deucravacitinib and shikonin combination therapy ameliorates imiquimod-induced psoriasis in mice by Ling Xu, Jun Liu, Ying Jiang, Fuping Xu, Hongjiang Yu, Fang Fang and Lin Luo in International Journal of Immunopathology and Pharmacology.
Fragebogen zur Erfassung von Einstellungen zur Statistik Überarbeitete - Deutsche Version des HFS-R.
Creators: name: Carolina, Fellinghauer
name: Böcker, Maren
name: Carolin, Strobl
name: Nielsen, Tine
Publisher: name: Zenodo
Year: 2024

description: "Fragebogen zur Erfassung von Einstellungen zur Statistik Überarbeitete - Deutsche Version des HFS-R" is the German translation of the "Holdninger og Forhold til Statistik – Revideret spørgeskema (HFS-R)"  (in English: Statistical anxiety and Attitudes towards statistics questionnaire)

Citation of the German questionnaire: 

Fellinghauer, C., Böcker, M., Strobl, C. & Nielsen, T. (2024). Fragebogen zur Erfassung von Einstellungen zur Statistik Überarbeitete - Deutsche Version des HFS-R. DOI: 10.5281/zenodo.14315983

 

Citation of the Danish questionnaire: 

Nielsen, T., & Kreiner, S. (2021). Holdninger og Forhold til Statistik – Revideret spørgeskema (HFS-R). DOI: 10.5281/zenodo.14288641

 

HFS and HFS-R was developed in these publications:

Nielsen, T. & Kreiner, S. (2018). Measuring Statistical Anxiety and Attitudes Towards Statistics: Development of a Comprehensive Danish Instrument (HFS-R). Cogent Education, 5(1). https://doi.org/10.1080/2331186X.2018.1521574    

Nielsen, T & Kreiner, S. (2021): Statistical Anxiety and Attitudes Towards Statistics: criterion-related construct validity of the HFS-R questionnaire revisited using Rasch models. Cogent Education.    https://doi.org/10.1080/2331186X.2021.1947941 

The HFS-R was compared to a German language version in a Swiss sample of students in: 

Nielsen, T., Fellinghauer, C., Strobl, C., Kronthaler, D., & Kreiner, S. (2025). Statistical Anxiety and Attitudes Towards Statistics in psychology students: A measurement comparison study of the German and Danish language versions of the HFS-R. Educational Methods & Psychometrics, 3, Article No. 19. https://dx.doi.org/10.61186/emp.2025.6
Complex degenerate metrics in general relativity: a covariant extension of the Moore-Penrose algorithm
Creators: name: Garnier, Arthur
name: Battista, Emmanuele
Publisher: name: arXiv
Year: 2025
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: The Moore-Penrose algorithm provides a generalized notion of an inverse, applicable to degenerate matrices. In this paper, we introduce a covariant extension of the Moore-Penrose method that permits to deal with general relativity involving complex non-invertible metrics. Unlike the standard technique, this approach guarantees the uniqueness of the pseudoinverse metric through the fulfillment of a set of covariant relations, and it allows for the proper definition of a covariant derivative operator and curvature-related tensors. Remarkably, the degenerate nature of the metric can be given a geometrical representation in terms of a torsion tensor, which vanishes only in special cases. Applications of the new scheme to complex black hole geometries and cosmological models are also investigated, and a generalized concept of geodesics that exploits the notion of autoparallel and extremal curves is presented. Relevance of our findings to quantum gravity and quantum cosmology is finally discussed.
description: 55 pages (including 3 appendices); accepted for publication in the European Physical Journal C
Higher Order Modes Based Beam Phase Study : Simulations and Measurements
Creators: name: Baboi, Nicoleta-Ionela
name: Wamsat, Thomas
name: Mavric, Uros
name: Shi, Liangliang
name: Jones, R
Publisher: name: Deutsches Elektronen-Synchrotron, DESY, Hamburg
Year: 2016

description: ICFA Mini Workshop on High Order Modes in Superconducting Cavities 2016, HOMSC16, Warnemünde, Germany, 22 Aug 2016 - 24 Aug 2016 ; (2016).
description: – A brief introduction to the European XFEL and Higher Order Modes– Principle of beam phase determination– Simulations with circuit model– Measurements with a broadband setup– Summary and Outlook
Online_Appendix_rev – Supplemental material for Mediated Personalization of Executive European Union Politics: Examining Patterns in the Broadsheet Coverage of the European Commission, 1992–2016
Creators: name: Katjana Gattermann
Publisher: name: Figshare
Year: 2018
Subjects: subject: 200199 Communication and Media Studies not elsewhere classified
subject: FOS: Media and communications
subject: 160607 International Relations
subject: FOS: Political science

description: Supplemental material, Online_Appendix_rev for Mediated Personalization of Executive European Union Politics: Examining Patterns in the Broadsheet Coverage of the European Commission, 1992–2016 by Katjana Gattermann in The International Journal of Press/Politics
Supplemental material for Ewald Hering’s (1899) On the Limits of Visual Acuity: A Translation and Commentary
Creators: name: Strasburger, Hans
name: Huber, Jörg
name: Rose, David
Publisher: name: SAGE Journals
Year: 2018
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: Neuroscience

description: Supplemental material for Ewald Hering’s (1899) On the Limits of Visual Acuity: A Translation and Commentary by Hans Strasburger, Jörg Huber and David Rose in i-Perception
Supplemental Material, SPPS762299_suppl_mat - When Do Intended Performance Standards Predict Goal-Related Affect? A Motivated-Reasoning Perspective
Creators: name: Sweeney, Allison M.
name: Freitas, Antonio L.
Publisher: name: SAGE Journals
Year: 2018
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental Material, SPPS762299_suppl_mat for When Do Intended Performance Standards Predict Goal-Related Affect? A Motivated-Reasoning Perspective by Allison M. Sweeney, and Antonio L. Freitas in Social Psychological and Personality Science
Supplementary Material, Supplemental_Table_S7 – Implementation of Text-Messaging and Social Media Strategies in a Multilevel Childhood Obesity Prevention Intervention: Process Evaluation Results
Creators: name: Loh, Ivory H.
name: Schwendler, Teresa
name: Trude, Angela C.B.
name: Steeves, Elizabeth T. Anderson
name: Cheskin, Lawrence J.
name: Lange, Sarah
name: Gittelsohn, Joel
Publisher: name: SAGE Journals
Year: 2018
Subjects: subject: 111099 Nursing not elsewhere classified
subject: FOS: Health sciences

description: Supplementary Material, Supplemental_Table_S7 for Implementation of Text-Messaging and Social Media Strategies in a Multilevel Childhood Obesity Prevention Intervention: Process Evaluation Results by Ivory H. Loh, Teresa Schwendler, Angela C.B. Trude, Elizabeth T. Anderson Steeves, Lawrence J. Cheskin, Sarah Lange, and Joel Gittelsohn in INQUIRY: The Journal of Health Care Organization, Provision, and Financing
Appendix 1 -Supplemental material for Chronic Disturbance Affects the Demography and Population Structure of Beaucarnea inermis, a Threatened Species Endemic to Mexico
Creators: name: Rubio-Méndez, Gabriel
name: Castillo-Gómez, Hugo A.
name: Hernández-Sandoval, Luis
name: Espinosa-Reyes, Guillermo
name: J. Arturo De-Nova
Publisher: name: Figshare
Year: 2018
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Geography
subject: 120505 Regional Analysis and Development
subject: FOS: Social and economic geography

description: Supplemental material, Appendix 1 for Chronic Disturbance Affects the Demography and Population Structure of Beaucarnea inermis, a Threatened Species Endemic to Mexico by Gabriel Rubio-Méndez, Hugo A. Castillo-Gómez, Luis Hernández-Sandoval, Guillermo Espinosa-Reyes and J. Arturo De-Nova in Tropical Conservation Science
HOM Characterization for Beam Diagnostics at the European XFEL
Creators: name: Baboi, Nicoleta-Ionela
Publisher: name: Deutsches Elektronen-Synchrotron, DESY, Hamburg
Year: 2016

description: ICFA Mini Workshop on High Order Modes in Superconducting Cavities 2016, HOMSC16, Warnemünde, Germany, 22 Aug 2016 - 24 Aug 2016 ; (2016).
description: HOM-based diagnostics in SC accelerating cavitiesPrincipleExperience at FLASHThe European XFELSpectra of 1.3 GHz cavities in the E-XFELBeam measurements in 1.3 GHz cavities in the E-XFEL injectorSummary
Supporting_information_file – Supplemental material for Early negative fluid balance is associated with lower mortality after cardiovascular surgery
Creators: name: Li, Chenglong
name: Wang, Hong
name: Liu, Nan
name: Jia, Ming
name: Zhang, Haitao
name: Xi, Xiuming
name: Hou, Xiaotong
Publisher: name: SAGE Journals
Year: 2018
Subjects: Cardiology
Surgery

description: Supplemental material, Supporting_information_file for Early negative fluid balance is associated with lower mortality after cardiovascular surgery by Chenglong Li, Hong Wang, Nan Liu, Ming Jia, Haitao Zhang, Xiuming Xi and Xiaotong Hou, The Beijing Acute Kidney Injury Trial (BAKIT) Workgroup in Perfusion
SPM-enabled fiber laser source beyond 1.2 $\mu$m
Creators: name: Zhou, Gengji
name: Xin, Ming
name: Liu, Yizhou
name: Kärtner, Franz
name: Chang, Guoqing Noah
Publisher: name: Deutsches Elektronen-Synchrotron, DESY, Hamburg
Year: 2016

description: Advanced Solid State Lasers conference, ASSL, Boston, Massachusetts, USA, 30 Oct 2016 - 3 Nov 2016 ; (2016).
description: Using a home-built, 500-nJ Yb-fiber laser system and large mode area fibers, we demonstrate that SPM-enabled ultrafast fiber source can generate ultrashort pulses with 16.5-nJ pulse energies at 1225 nm.
Supplemental Material, Fig_S2 - The Possible Role of Eukaryotic Translation Initiation Factor 3 Subunit e (eIF3e) in the Epithelial–Mesenchymal Transition in Adenomyosis
Creators: name: Xianjun Cai
name: Minhong Shen
name: Xishi Liu
name: Jichan Nie
Publisher: name: SAGE Journals
Year: 2018
Subjects: subject: 110306 Endocrinology
subject: FOS: Clinical medicine
subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Supplemental Material, Fig_S2 for The Possible Role of Eukaryotic Translation Initiation Factor 3 Subunit e (eIF3e) in the Epithelial–Mesenchymal Transition in Adenomyosis by Xianjun Cai, Minhong Shen, Xishi Liu, and Jichan Nie in Reproductive Sciences
Supplemental material for Right ventricular stroke work correlates with outcomes in pediatric pulmonary arterial hypertension
Creators: name: Weiguang Yang
name: Marsden, Alison L.
name: Ogawa, Michelle T.
name: Sakarovitch, Charlotte
name: Hall, Keeley K.
name: Rabinovitch, Marlene
name: Feinstein, Jeffrey A.
Publisher: name: SAGE Journals
Year: 2018
Subjects: subject: Cardiology
subject: 110203 Respiratory Diseases
subject: FOS: Clinical medicine

description: Supplemental material for Right ventricular stroke work correlates with outcomes in pediatric pulmonary arterial hypertension by Weiguang Yang, Alison L. Marsden, Michelle T. Ogawa, Charlotte Sakarovitch, Keeley K. Hall, Marlene Rabinovitch and Jeffrey A. Feinstein in Pulmonary Circulation
DS_10.1177_0022034518779075 – Supplemental material for Bioengineered Tooth Buds Exhibit Features of Natural Tooth Buds
Creators: name: E.E. Smith
name: S. Angstadt
name: N. Monteiro
name: W. Zhang
name: A. Khademhosseini
name: P.C. Yelick
Publisher: name: SAGE Journals
Year: 2018
Subjects: subject: 110599 Dentistry not elsewhere classified
subject: FOS: Clinical medicine
subject: 91299 Materials Engineering not elsewhere classified
subject: FOS: Materials engineering

description: Supplemental material, DS_10.1177_0022034518779075 for Bioengineered Tooth Buds Exhibit Features of Natural Tooth Buds by E.E. Smith, S. Angstadt, N. Monteiro, W. Zhang, A. Khademhosseini and P.C. Yelick in Journal of Dental Research
GM604 down-regulates SOD1 and alters expression of 89 genes associated with amyotrophic lateral sclerosis
Creators: name: Swindell, William R.
name: Bojanowski, Krzysztof
name: Kindy, Mark
name: Shum, Tony
name: Chau, Raymond
name: Ko, Dorothy
Publisher: name: F1000Research
Year: 2016

description: Amyotrophic lateral sclerosis (ALS) is an incurable disease leading to upper and lower motor neuron degeneration. Genervon Biopharmaceuticals has developed the synthetic oligopeptide drug GM604 (GM6) as a potential ALS treatment. This study used DNA microarrays to evaluate the effects of GM6 on gene expression in SH-SY5Y neuroblastoma cells. We identified > 1000 genes modulated by GM6. GM6-increased genes were frequently associated with cell division and mitosis, while GM6-repressed genes were often associated with the mitochondrial envelope. Genes previously linked to ALS by genome-wide association studies (GWASs) were disproportionately induced by GM6 (P = 0.002). We identified 89 ALS-associated genes modulated by GM6 (2-fold expression change; FDR < 0.10). Such genes included superoxide dismutase 1 (SOD1), which was significantly repressed by GM6 in SH-SY5Y cells. Consistent with this, SOD1 protein was decreased in plasma samples from ALS patients following 2 weeks (6 doses) of GM6 treatment (P = 0.009). These findings support the idea that GM6 alters signaling pathways involved in ALS pathogenesis. We propose a tentative mechanism of action by which GM6 may slow motor neuron degeneration, which involves SOD1 down-regulation, repression of the mitochondrial (intrinsic) apoptotic pathway, and activation of pro-mitotic developmental pathways.
Discovery of the Mexican Blindcat, Prietella phreatophila, in the U.S., and an update on its rangewide conservation status
Creators: name: Hendrickson, Dean A.
name: Johnson, Jack
name: Sprouse, Peter
name: Howard, Sarah
name: Garrett, Gary P.
name: Krejca, Jean K.
name: Cohen, Adam E.
name: Danté Fenolio
name: Gluesenkamp, Andy
name: Paulin, José Antonio Dávila
name: Dugan, Laura
Publisher: name: F1000Research
Year: 2016

description: A natural population of the Mexican blindcat, Prietella phreatophila Carranza 1954, previously known only from México, was documented in 2016 from a cave in the Amistad National Recreation Area in Texas. Occurrence of the species in Texas is consistent with other indicators of international interconnections of aquifers in this region under the Río Grande. Long listed as Endangered by the Mexican government, it was also listed by the U.S. Fish and Wildlife Service as Endangered in 1970, and so the Texas population is fully protected under the Endangered Species Act as Endangered. As a result of the extremely low detectability of the species and very limited access to its habitat to sample, it is likely that the range of the species in both countries is broader than physical sampling of specimens has revealed. Here we review all previous knowledge of the species and its habitat and provide a reassessment of its overall conservation status and threats, most notably including aquifer depletion and contamination in both the Mexican and U.S. portions of its known range.
Integrative therapies in palliative care
Creators: name: Collinge, William
Publisher: name: F1000Research
Year: 2016

description: Integrative therapies are rapidly growing in use world wide by patients and families accessing palliative care services. This presentation will survey the major types of integrative therapies currently being used in the field. We will review current understanding of mechanisms of action, specific applications in palliative care populations, the state of the evidence, and challenges and facilitators of effective service delivery. Modalities addressed include biofield therapies, acupuncture, expressive arts therapies, aromatherapy, massage, movement approaches, and mind/body interventions.
BIOMEDICAL WORD SENSE DISAMBIGUATION WITH NEURAL WORD AND CONCEPT EMBEDDINGS
Creators: name: Sabbir, AKM
Publisher: name: University of Kentucky
Year: 2016
Subjects: subject: Bioinformatics
subject: FOS: Computer and information sciences

description: Addressing ambiguity issues is an important step in natural language processing (NLP) pipelines designed for information extraction and knowledge discovery. This problem is also common in biomedicine where NLP applications have become indispensable to exploit latent information from biomedical literature and clinical narratives from electronic medical records. In this thesis, we propose an ensemble model that employs recent advances in neural word embeddings along with knowledge based approaches to build a biomedical word sense disambiguation (WSD) system. Specifically, our system identities the correct sense from a given set of candidates for each ambiguous word when presented in its context (surrounding words). We use the MSH WSD dataset, a well known public dataset consisting of 203 ambiguous terms each with nearly 200 different instances and an average of two candidate senses represented by concepts in the unified medical language system (UMLS). We employ a popular biomedical concept, Our linear time (in terms of number of senses and context length) unsupervised and knowledge based approach improves over the state-of-the-art methods by over 3% in accuracy. A more expensive approach based on the k-nearest neighbor framework improves over prior best results by 5% in accuracy. Our results demonstrate that recent advances in neural dense word vector representations offer excellent potential for solving biomedical WSD.
NOBUGS 2016 Proceedings
Creators: name: New Opportunities For Better User Group Software
Publisher: name: European Spallation Source ERIC
Year: 2016

description: The main activity of the NOBUGS (New Opportunities for Better User Group Software)
      group is the organization of a series of conferences. The aim of these conferences
      is to foster collaboration and exchange between scientists and IT professionals
      working on software for X-ray, neutron and muon sources around the world.
      Better software for data acquisition and data analysis will increase productivity
      of facility users and thus maximize the scientific output.
Safety systems at the SAFARI-1 Neutron Diffraction Facility
Creators: name: Raaths, Christo
name: Van Heerden, Rudolph
name: Marais, Deon
name: Venter, Andrew
Publisher: name: European Spallation Source ERIC
Year: 2016

description: NOBUGS 2016 Proceedings
description: Personnel safety is of primary importance at beam-line facilities at nuclear research installations which includes the establishment of a safe working environment and minimizing the risk of accidental exposure to ionizing radiation [1]. This can be achieved through robust engineering design of independent safety systems as well as following pre-determined safe working procedures.

The SAFARI-1 Neutron Diffraction Facility accommodates two instruments on one reactor beam line. Thus many key features such as the in-pile collimator with its beam shaper, filtering system and the primary beam shutter are shared. From here on each facility functions independently with their own secondary beam shutters. To minimise potential risks that these secondary beam shutters may inadvertently be operated from the control console, key passive safety systems were implemented.

This presentation will highlight some of the key safety features which include the interlock system of the primary and secondary beam shutters. The performance of the neutron beam stops will also be presented.

**References**

[1] South Africa.  (2006). National nuclear regulator act (Act no 47 of 1999): on safety standards and regulatory practices.  (Government notice no. R388). Government gazette, 28755, 28 April.
"Manyo-Lib" Object-Oriented Data Analysis Framework for Neutron Scattering
Creators: name: Suzuki, Jiro
name: Inamura, Yasuhiro
name: Ito, Takayoshi
name: Nakatani, Takeshi
name: Otomo, Toshiya
Publisher: name: European Spallation Source ERIC
Year: 2016

description: NOBUGS 2016 Proceedings
description: We report the current status of data-analysis software environment at Materials and Life Science Facility (MLF) of Japan Proton Accelerator Research Complex (J-PARC). MLF is a user facility which provides neutron and muon sources for experiments. The basic concept of analysis environment for the neutron scattering instruments is to provide a software framework that has common and generic analysis functionalities for neutron scattering experiments. The framework, “Manyo Library” is a C++ class library which can be worked on Python environment. Manyo-Lib is a software infrastructure and provides the libraries for building data input/output functions, data-analysis functions, and network-distributed data processing environment, etc. User's applications software and data-analysis software have been developed for each instrument by adopting the framework. The 20 neutron-scattering spectrometers have been installed to MLF, and the data-analysis softwares developed on Manyo-Library are working on the 16 spectrometers.

Raw data files in the event-data format are filled into two- or three-dimensional histograms with error values constructed on the data containers. Many data-analysis operators for the histograms, the four arithmetic operations and so on, with error propagations are prepared, and the operators are working with OpenMP(http://openmp.org/wp/).

The histogram data in the containers can be converted into NeXus format files (http://www.nexusformat.org/). In FY 2015 and 2016 we have increased the efficiency of the data conversion, and we will show the result in the presentation.
The unified software package Sonix+. Analysis of development experience
Creators: name: Kirilov, Andrey
Publisher: name: European Spallation Source ERIC
Year: 2016

description: NOBUGS 2016 Proceedings
description: The software package Sonix + (Sonix) / 1 / developed as a unified control software for neutron instgruments. It has been in operation since 1995. Currently it is used at instruments of the IBR-2 (FLNP, JINR), as well at some instruments at other centers of the Russian Federation (totaly about  20 installations).
Though the main ideas of the Sonix + are largely similar to the decisions taken at other centers of the NOBUGS community, the consideration of specific needs and traditions prevailing at the FLNP, had substantial influence at the structure of the complex, and some implementation decisions. This applies, for example, the choice for the operating system of instrument control computer, implementation details of so-called "database" -  parameter storage with fast access for intermodule communication, a graphical user interface, choice of the spectra recording format, etc.
During the long period of exploitation the complex was developed, it has been added new components and has been changed to the new requirements. This led, in particular, to the adjustment of a number of initial decisions, and to a certain eclecticism. Some implemented features have unclaimed, and others, on the contrary, have required further development.
This presentation is devoted to a detailed review of all these issues.

/1/ http://sonix.jinr.ru/wiki/doku.php?id=en:index
Programs and techniques based on ROOT package for acquisition and sorting of the list mode data of the neutron detectors
Creators: name: Litvinenko, Elena
name: Bogdzel, Andrey
name: Churakov, Andrey
name: Rossa, Lutz
name: Sauer, Olaf-Peter
name: Wilpert, Thomas
Publisher: name: European Spallation Source ERIC
Year: 2016

description: NOBUGS 2016 Proceedings
description: A detector group of a neutron center has to solve daily a variety of non-typical tasks. These tasks may appear due to the configuration and commissioning of detectors, search for causes of faults, or with the development of new methodologies and the preparation of new types of experiments. That is why the requirements to the software from the detector group are specific and varied. The user oriented software does not cover full range of these demands.

The wish list for software from the detector group in FLNP includes detailed diagnostic tools, autonomy, fast deployment, flexibility, and, additionally, compact data formats, easy integration into the experiment control software (detachable or connecting components), extensibility with respect to new equipment.

These requirements are the same for different types of detectors.
Partially these demands have been realized in previous software like DeLiDAQ-1 [1] developed in collaboration with HZB, Berlin (former HMI).

Recently we have started to follow such requirements in our new developments. Especially important is the first item - to get full information of measured parameters. The most complete information from the detector and about operation of the readout circuit can be extracted by  list mode data, and it corresponds to the modern trend of user oriented experimental techniques.

The most comprehensive software package for event list data is ROOT package from CERN due to its concept of the ROOT trees with excellent implementation. Another reason to use this package is its compact data format. And as a bonus you get a huge list of benefits (because ROOT is an intensively used toolkit with complete suite of C ++ classes for fitting, linear algebra, visualization of large datasets, graphical user interfaces, etc.). In the report I will explain the solutions for the list mode data in the software implemented by me, some of which are already working for the detector specialists while others are under development. Software discussed in the report is designed for position-sensitive detectors with delay line readout and for the recorded data from the gaseous proton recoil telescope for fast neutron spectrometry [2].

[1] Nucl. Instr. and Meth. A 569 (2006) 900–904; See also Nucl. Instr. and Meth. A 572 (2007) 1004

[2] Physics of Particles and Nuclei Letters, 2012, Vol. 9, No. 6–7, pp. 508–516
Rejection_Sensitivity,_Jealousy,_Aggression_Data – Supplemental material for Rejection Sensitivity, Jealousy, and the Relationship to Interpersonal Aggression
Creators: name: Murphy, Anna M.
name: Russell, Gemma
Publisher: name: SAGE Journals
Year: 2016
Subjects: subject: 160299 Criminology not elsewhere classified
subject: FOS: Law

description: Supplemental material, Rejection_Sensitivity,_Jealousy,_Aggression_Data for Rejection Sensitivity, Jealousy, and the Relationship to Interpersonal Aggression by Anna M. Murphy and Gemma Russell in Journal of Interpersonal Violence
Choptank ecological assessment : digital atlas : baseline status report
Creators: name: Clement, Christopher G.
name: Nelson, David M.
name: Claflin, Larry W., 1943-
name: Dorfman, Daniel S.
name: Mabrouk, Ayman
name: Bauer, Laurie J.
Publisher: name: U.S. Department of Commerce, National Oceanic and Atmospheric Administration, National Ocean Service
Year: 2016
Subjects: subject: Ecological assessment (Biology)--Choptank River Watershed (Del. and Md.)

description: The Choptank watershed was selected by NOAA as a Habitat Focus Area (HFA) for the Habitat Blueprint Program. As such, NOAA plans an integrated set of activities combining resources from multiple programs to leverage the full weight of its eff orts (Figure 1.2). The HFA Implementation Plan includes programs for: Oyster Restoration, Wetlands, Living  Shorelines, Fish Passage, Ecological Assessment, Water Column Habitat, Ecosystem, Community  Services, Climate Resiliency, Collective Impact, K-12 Education,  Communication, Outreach. As one component of the Ecological Assessment, NOAA’s National Centers for Coastal Ocean Science (NCCOS) has developed a Digital Atlas. The Digital Atlas integrates information from the full spectrum of research and monitoring within the watershed, compiles it as a single resource, and serves that information via an internet mapping portal. This report is intended to introduce information contained in the Digital Atlas. It highlights seven topics of ecological significance within the Choptank HFA. However, this report does not encompass the full suite of spatial information available from all of the monitoring and research programs in the area. The topics emphasized through this report are: Land Cover, Shoreline Composition, Water Quality , Benthic Index of Biotic Integrity, Submerged Aquatic Vegetation, Fish, Oysters.
Innovations and strategies for teaching online
Creators: name: Wyatt-Nichol, Heather
name: Dunning, Pamela
Publisher: name: Maryland Shared Open Access Repository
Year: 2009
Subjects: Online Pedagogy
Online Instruction

description: The development and delivery of online courses has become more sophisticated as course management systems have improved and the information available on the internet has proliferated. Faculty involvement and administrative support in online course development and delivery varies across universities, nevertheless, technological advances have allowed online instructors to address criticisms of the virtual classroom. Establishing clear expectations, building learning communities through interaction, and aligning goals and objectives with activities and assessments are strategies addressed to enhance the online learning experience.
STRATIGRAPHIC, GEOCHEMICAL, AND WELL LOG ANALYSIS OF THE WOLFCAMP-D UNCONVENTIONAL PLAY IN THE CENTRAL MIDLAND BASIN, TEXAS
Creators: name: Ryan, Patrick Thomas
Publisher: name: University of Kentucky
Year: 2016
Subjects: subject: Geology
subject: FOS: Earth and related environmental sciences
subject: Sedimentology
subject: Stratigraphy

description: This M.S. thesis utilizes diverse subsurface datasets from the central Midland Basin, a recently reinvigorated petroleum producing region, to better understand the depositional history of the prospective Wolfcamp-D interval. An integrated set of methods were applied to ~320 ft of drill core from Midland County (Texas). Elemental chemostratigraphy collected via x-ray fluorescence highlights the pervasive fine-scale variability in the stratigraphy of the core, and aided in the classification of three different mudrock facies types. Organic-rich, siliceous mudrocks are cyclically interbedded with aluminum-rich mudrocks and carbonates throughout the Wolfcamp-D. Trace metal correlations with total organic carbon indicate slow bottom-water recharge from the open ocean, and that the Midland Basin was at times strongly anoxic during the deposition of black mudrocks. The changes in depositional environment associated with these different lithofacies are interpreted to have been driven by glacioeustatic sea level change, as well as shifts in global and regional climate that occurred during the Late Pennsylvanian. The repetitively stacked lithofacies are therefore consistent with a deep-basin cyclothem depositional motif and share some commonalities with well-studied shelf cyclothems. The results hold important implications for unconventional reservoir characterization of basin-center shale plays in the Permian Basin.
sj-docx-1-eso-10.1177_23969873241260956 – Supplemental material for Risk of mortality and recurrence after first-time stroke among patients with type 2 diabetes: A Danish nationwide cohort study
Creators: name: Kristensen, Frederik Pagh Bredahl
name: Svane, Helene Matilde Lundsgaard
name: Laugesen, Kristina
name: Al-Mashhadi, Sofie Kejlberg
name: Christensen, Diana Hedevang
name: Sørensen, Henrik Toft
name: Skajaa, Nils
Publisher: name: SAGE Journals
Year: 2024
Subjects: subject: Cardiology
subject: Medicine
subject: Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine

description: Supplemental material, sj-docx-1-eso-10.1177_23969873241260956 for Risk of mortality and recurrence after first-time stroke among patients with type 2 diabetes: A Danish nationwide cohort study by Frederik Pagh Bredahl Kristensen, Helene Matilde Lundsgaard Svane, Kristina Laugesen, Sofie Kejlberg Al-Mashhadi, Diana Hedevang Christensen, Henrik Toft Sørensen and Nils Skajaa in European Stroke Journal
SIMEX: Simulation of Experiments at Advanced Laser Light Sources
Creators: name: Fortmann-Grote, Carsten
name: Briggs, Richard
name: Bussmann, Michael
name: Buzmakov, Alexey
name: Garten, Marco
name: Grund, Alexander
name: Huebl, Axel
name: Jurek, Zoltan
name: Loh, Duane
name: Rueter, Tonn
name: Samoylova, Liubov
name: Yakubov, Sergey
name: Yoon, Chun Hong
name: Mancuso, Adrian P.
name: Ziaja, Beata
name: Santra, Robin
name: Hauf, Steffen
name: Joy, Ashley
name: Wing, Matthew
Publisher: name: European Spallation Source ERIC
Year: 2016

description: NOBUGS 2016 Proceedings
description: Realistic simulations of experiments at large scale photon facilities, such as optical laser laboratories,
synchrotrons, and Free Electron Lasers, are of vital importance for the successful preparation,
execution, and analysis of these experiments investigating ever more complex physical systems, e.g.
biomolecules, complex materials, and ultrashort lived states of highly excited matter. Traditional
photon science modeling takes into account only isolated aspects of an experiment, such as the beam
propagation, the photon-matter interaction, or the scattering process, making idealized assumptions
about the remaining parts, e.g. the source spectrum, temporal structure and coherence properties of
the photon beam, or the detector response. In SIMEX, we have implemented a platform for complete
start-to-end simulations, following the radiation from the source, through the beam transport optics
to the sample or target under investigation, its interaction with and scattering from the sample
and its registration in a photon detector, including a realistic model of the detector response to
the radiation. Data analysis tools can be hooked up to the modeling pipeline easily. This allows
researchers and facility operators to simulate their experiments and instruments in real life scenarios,
identify promising and unattainable regions of the parameter space and ultimately make better use
of expensive beamtime.

Our software consists of a generic backbone defining the user and data interfaces to Calculators
which are responsible for the simulation of the segments in the virtual beamline. A number of
specific Calculators for the photon source, photon propagation, photon-matter interaction, photon
scattering, photon detection, and photon data analysis are pre-installed. Further contributed Calculators can easily be integrated by inheriting from the abstract interfaces and providing only a few,
well defined interface methods. A common data format description facilitates the data exchange
among simulation codes.

In this paper, we describe the general structure and implementation of the SIMEX software and
discuss a number of applications: Modeling of single particle imaging at the European X-Ray Free
Electron Laser (XFEL), a pump-and probe experiment with ultrashort pulsed optical laser excitation
of a metal foil and subsequent probing by small angle scattering with coherent XFEL radiation, and
a long pulse optical laser shock compression experiment probed by synchrotron radiation.
Recent Progress in the Development of MLF EXP-DB in J-PARC/MLF
Creators: name: Moriyama, Kentaro
name: Nakatani, Takeshi
Publisher: name: European Spallation Source ERIC
Year: 2016

description: NOBUGS 2016 Proceedings
description: The MLF Experimental Database (MLF EXP-DB) is a core system aimed at delivering advanced services for data management and data access in J-PARC/MLF [1]. The main role of this system is to safely and efficiently manage a huge amount of data created in neutron instruments, and provide an effective data access for facility users promoting the creation of scientific results. The system is a web-based integrated database system based on a three-tiered architecture model. Collecting experimental data and associated information such as proposal, principal investigator and samples from instruments and other business database systems, it creates experimental data catalog, and provides facility staff and users with web portals for referring the data catalog.
 Recently we have redesigned the MLF EXP-DB for enhancing the availability and scalability toward full-scale operation of the system and facility in the future. In addition, we have made additional development of the web portal for improving the usability.

**High availability**
 In order to enhance the availability, we have made the system to a redundant distributed system consisting of a couple of servers in a switch over relationship with database replication. It allows to avoid a service outage owing to system failure and maintenance such as application of a security patch as much as possible.

**Scaling-out**
 We have scaled out the system improving scalability especially for the load balancing of data cataloging which depends on the data production rate in the instruments. The data production rate is increasing with the enhancement of beam intensity based on the development plan for accelerators and neutron sources. Since the maximum data production rate in a whole facility at the full performance of beam intensity is expected to reach 5TB/day, so it is critical issue for the sustainability of service provision.

**Web portal**
 We have developed a unified web interface for the redundant distributed system and improved some features such as data retrieval on the web portal. It is possible to search data through the distributed systems and with flexible search conditions according to various measurement conditions.
In this contributions, we will report the detail architecture and the result of performance evaluation for the recent development, and present operating status of the MLF EXP-DB.

**References**
 1. K. Moriyama and T. Nakatani, “A Data Management Infrastructure for Neutron Scattering Experiments in J-PARC/MLF”, Proceedings of ICALEPCS2015, Melbourne, Australia, in press.
Electromagnon signatures of a metastable multiferroic state
Creators: name: Dastrup, Blake S.
name: Zhang, Zhuquan
name: Miedaner, Peter R.
name: Chien, Yu-Che
name: Sun, Young
name: Wu, Yan
name: Cao, Huibo
name: Baldini, Edoardo
name: Nelson, Keith A.
Publisher: name: arXiv
Year: 2025
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Magnetoelectric multiferroic materials, particularly type-II multiferroics where ferroelectric polarizations arise from magnetic order, offer significant potential for the simultaneous control of magnetic and electric properties. However, it remains an open question as to how the multiferroic ground states are stabilized on the free-energy landscape in the presence of intricate competition between the magnetoelectric coupling and thermal fluctuations. In this work, by using terahertz time-domain spectroscopy in combination with an applied magnetic field, photoexcitation, and single-shot detection, we reveal the spectroscopic signatures of a magnetic-field-induced metastable multiferroic state in a hexaferrite. This state remains robust until thermal influences cause the sample to revert to the original paraelectric state. Our findings shed light on the emergence of metastable multiferroicity and its interplay with thermal dynamics.
Addressing the Challenges of implementing the ESRF Data Policy
Creators: name: Gotz, Andy
Publisher: name: European Spallation Source ERIC
Year: 2016

description: NOBUGS 2016 Proceedings
description: by Alex de Maria, Armando Solé, and Andy Gotz on behalf of the ESRF Data Policy Implementation Team

The ESRF, the European Synchroton, has recently adopted a Data Policy which will archive all data collected at the ESRF for 10 years and be made freely available as Open Data after an initial embargo period of 3 years (can be extended on request). Currently the ESRF produces 2 PBs of raw data annually. This means archiving at least 70 PBs of data over the next 10 years if one assumes a linear growth of data production. The Data Policy introduces a number of new challenges for the ESRF. These challenges include persistent user identities, user rights, metadata definition and standardisation, automated collecting of metadata, metadata catalogue, data containers, long term archiving, and finding and re-using data. This paper will describe how these challenges are being solved. The paper describes how it is possible for a mature synchrotron to adopt and implement a modern Data Policy largely built on existing standards like the ICAT metadata catalogue (icatproject.org) and the HDF5/Nexus data format/convention. Archiving such large quantities of data is largely due to the availability of off-the-shelf tape technology which continues to evolve and improve.