cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
The Binary Dwarf Carbon Star SDSS J125017.90+252427.6
Creators: name: Margon, Bruce
name: Kupfer, Thomas
name: Burdge, Kevin
name: Prince, Thomas A.
name: Kulkarni, Shrinivas R.
name: Shupe, David L.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Although dwarf carbon (dC) stars are thought universally to be binaries to explain the presence of $C_2$ in their spectra while still near main sequence luminosity, direct observational evidence for binarity is remarkably scarce. Here we report the detection of a 2.92 d periodicity in both photometry and radial velocity of SDSS J125017.90+252427.6, an $r=16.4$ dC star. This is the first photometric binary dC, and only the second dC spectroscopic binary. The relative phase of the photometric period to the spectroscopic observations suggests that the photometric variations are a reflection effect due to heating from an unseen companion. The observed radial velocity amplitude of the dC component ($K = 98.8\pm10.7$ km/s) is consistent with a white dwarf companion, presumably the evolved star that earlier donated the carbon to the dC, although substantial orbital evolution must have occurred. Large synoptic photometric surveys such as the Palomar Transient Factory, used for this work, may prove useful for identifying binaries among the shorter period dC stars.
description: Accepted for publication in The Astrophysical Journal (Letters)
MOESM1 of Efficacy and safety of tetramethylpyrazine phosphate on pulmonary hypertension: study protocol for a randomized controlled study
Creators: name: Chen, Yuqin
name: He, Wenjun
name: Ouyang, Haiping
name: Liu, Chunli
name: Hong, Cheng
name: Wang, Tao
name: Yang, Kai
name: Lu, Wenju
name: Wang, Jian
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. SPIRIT 2013 Checklist: Recommended items to address in a clinical trial protocol and related documents*.
Additional file 2 of Benchmark of 16S rRNA gene amplicon sequencing using Japanese gut microbiome data from the V1–V2 and V3–V4 primer sets
Creators: name: Kameoka, Shoichiro
name: Motooka, Daisuke
name: Watanabe, Satoshi
name: Kubo, Ryuichi
name: Jung, Nicolas
name: Midorikawa, Yuki
name: Shinozaki, Natsuko O.
name: Sawai, Yu
name: Takeda, Aya K.
name: Nakamura, Shota
Publisher: name: figshare
Year: 2021
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry

description: Additional file 2: Table 1S. Distribution of the selected participants. Table 2S. Percentage of classified OTUs/ASVs at each classification level. Table 3S. OTUs/ASVs numbers and the percentage of filtered-out sequences. Table 4S. Lists of bacteria that showed statistical differences at the phylum level between V12 and V34. Table 5S. Lists of bacteria that showed statistical differences at the genus level between V12 and V34. Table 6S. Average compositions of the genera Bacteroides and Faecalibacterium.
The TeV spectrum of Mkn 501 as measured during the high state in 1997 by the HEGRA stereoscopic system of imaging air Cherenkov telescopes
Creators: name: Konopelko, A.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The BL Lac object Mkn 501 has shown very high emission in TeV gamma-rays from March to October, 1997. During this period the source was continuously monitored with the HEGRA stereoscopic system of 4 imaging air Cherenkov telescopes for a total exposure time of 110 hours. The unprecedented statistics of about 38,000 TeV photons, combined with the good energy resolution of ~20 % over the entire energy range and with detailed simulations of the detector response, allowed a determination of the average energy spectrum from 500 GeV to 24 TeV. Although the gamma-ray flux varied strongly with time, the daily energy spectra remained rather constant in their shape. Therefore it is justified to derive a time averaged spectrum and thus to extend, for the first time, the spectral measurement well beyond 10 TeV. This TeV spectrum of Mkn 501 shows a gradual steepening which could be caused by a number of physical processes, such as a limited energy range of the radiating particles, intrinsic gamma-ray absorption inside the source, the Klein-Nishina effect (in the case of an inverse Compton origin of the radiation) and finally, an absorption of the TeV gamma-rays propagating in the intergalactic medium.
description: presented at the VERITAS Workshop on TeV Astrophysics of Extragalactic Sources, eds. M. Catanese, J. Quinn, and T. Weekes, to be published in Astroparticle Physics
Collective Excitations in Asymmetric Parabolic Quantum Wells
Creators: name: Tamborenea, P. I.
name: Sarma, S. Das
Publisher: name: arXiv
Year: 1994
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: We study within the linear response theory the far-infrared optical absorption spectrum and the collective excitations of an asymmetric, wide parabolic Al$_x$Ga$_{1-x}$As quantum well, consisting of two half-parabolas of different curvatures, in the presence of an in-plane magnetic field. We employ a self-consistent-field approach in the local-density approximation using parameter values of a recent experimental study. At low $N_s$, there is only one resonance corresponding to the lowest inter-Landau-level transition, and at high $N_s$ we obtain two resonances at frequencies corresponding to the different curvatures of the well, in good agreement with experiment. We also calculate the optical spectra without any magnetic field and find similar trends as a function of $N_s$, i.e., one resonance at low $N_s$ and two main resonances at high $N_s$.}
description: 9 pages, LaTeX, 4 figures available upon request, PIT-SDS-006
title: ADCO, Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome III, Cart. 187 (11 H 72), f. 008
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome III, Archives départementales de la Côte-d'Or, Cart. 187 (11 H 72), f. 008, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome III, Archives départementales de la Côte-d'Or, Cart. 187 (11 H 72), f. 008, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
The Dynamics of Poor Systems of Galaxies
Creators: name: Mahdavi, A.
name: Geller, M. J.
name: Boehringer, H.
name: Kurtz, M. J.
name: Ramella, M.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We assemble and observe a sample of poor galaxy systems that is suitable for testing N-body simulations of hierarchical clustering (Navarro, Frenk, & White 1997; NFW) and other dynamical halo models (e.g., Hernquist 1990). We (1) determine the parameters of the density profile rho(r) and the velocity dispersion profile sigma(R), (2) separate emission-line galaxies from absorption-line galaxies, examining the model parameters and as a function of spectroscopic type, and (3) for the best-behaved subsample, constrain the velocity anisotropy parameter, beta, which determines the shapes of the galaxy orbits. The NFW universal profile and the Hernquist (1990) model both provide good descriptions of the spatial data. In most cases an isothermal sphere is ruled out. Systems with declining sigma(R) are well-matched by theoretical profiles in which the star-forming galaxies have predominantly radial orbits (beta > 0); many of these galaxies are probably falling in for the first time. There is significant evidence for spatial segregation of the spectroscopic classes regardless of sigma(R).
description: 36 pages, 20 figures, and 5 tables. To appear in the Astrophysical Journal
Approach to an ontology-based mobile intervention for patients with hypertension
Creators: name: Wheeler, Tyler
Publisher: name: Semantic Web Applications and Tools for Healthcare and Life Sciences
Year: 2018
Subjects: subject: 80301 Bioinformatics Software
subject: FOS: Computer and information sciences
subject: 80702 Health Informatics
subject: FOS: Media and communications
subject: 60102 Bioinformatics
subject: Cheminformatics

description: Lifestyle changes and the adoption of healthy behaviours are well es- tablished recommendations for the management of hypertension, a risk factor for cardiovascular and kidney disease. Mobile health interventions offer unique ad- vantages and novel approaches to helping individuals make and maintain such behaviour changes; however, current interventions often lack theoretical and sci- entific grounding. The objective of this study is to effectively model the knowledge, concepts and relationships relevant to the management of a chronic illness like hypertension, and to implement this knowledge model within a mo- bile self-management application that can be used by patients. A behaviour mod- ification approach based on COM-B (capability, opportunity, motivation, behav- iour) Model and the associated Behaviour Change Wheel (BCW) was developed. An ontology-based knowledge model was implemented to formally conceptual- ize relevant knowledge in hypertension clinical guidelines, behaviour change models and associated behaviour change strategies. In future work, a hyperten- sion management decision support framework will be designed and implemented as a mobile phone application using the aforementioned model. The usability of this pilot application will be tested by patients with hypertension. This applica- tion which will create clinical and behavioural profiles of a user to provide them with personalized management strategies, rooted in established behaviour change theory, that will engage and empower them to manage their condition. Given the nature of ontological models, this approach can be easily modified to address a variety of chronic illnesses.
Measuring the Relative Phase of the Energy Gap in a High-Temperature Superconductor with EELS
Creators: name: Flatte', Michael E.
Publisher: name: arXiv
Year: 1994
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: A method of measuring the relative phase of the energy gap in a high-temperature superconductor is suggested for electron energy loss spectroscopy. Energy-resolved measurements of off-specular scattering should show a feature similar to the specular feature associated with the gap. Unlike the specular feature, which reflects an average of the gap over the (normal) Fermi surface, the energy loss of the off-specular feature depends on the superconducting energy gap at only two locations on the Fermi surface. The onset of the feature reflects the relative phase between these two points. This result is independent of surface characteristics. Such characteristics affect the {\it magnitude} of the off-specular feature, not its location or onset. The size of the feature is estimated for a simple surface model. Implications of specific measurements on $\rm Bi_2Sr_2CaCu_2O_8$ are discussed.
Helical Fields and Filamentary Molecular Clouds
Creators: name: Fiege, Jason D.
name: Pudritz, Ralph E.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We study the equilibrium of pressure truncated, filamentary molecular clouds that are threaded by rather general helical magnetic fields. We first derive a new virial equation appropriate for magnetized filamentary clouds, which includes the effects of non-thermal motions and the turbulent pressure of the surrounding ISM. When compared with the data, we find that many filamentary clouds have a mass per unit length that is significantly reduced by the effects of external pressure, and that toroidal fields play a significant role in squeezing such clouds. We also develop exact numerical MHD models of filamentary molecular clouds with more general helical field configurations than have previously been considered. We also examine the effects of the equation of state by comparing ``isothermal'' filaments, with constant total (thermal plus turbulent) velocity dispersion, with equilibria constructed using a logatropic equation of state. We perform a Monte Carlo exploration of our parameter space to determine which choices of parameters result in models that agree with the available observational constraints. We find that both equations of state result in equilibria that agree with the observational results. Moreover, we find that models with helical fields have more realistic density profiles than either unmagnetized models or those with purely poloidal fields; we find that most isothermal models have density distributions that fall off as r^{-1.8} to r^{-2}, while logatropes have density profiles that range from r^{-1} to r^{-1.8}. We find that purely poloidal fields produce filaments with steep density gradients that not allowed by the observations.
description: 21 pages, 8 eps figures, submitted to MNRAS. Significant streamlining of text
Additional file 1 of Astroglial TLR9 antagonism promotes chemotaxis and alternative activation of macrophages via modulation of astrocyte-derived signals: implications for spinal cord injury
Creators: name: Li, Lun
name: Ni, Li
name: Heary, Robert
name: Elkabes, Stella
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology

description: Additional file 1. ODN 2088 does not induce chemotaxis of peritoneal macrophages in the absence of astrocytes. (A) TLR9 expression in macrophages. A gel showing TLR9 transcripts in mouse peritoneal cell cultures by qRT-PCR. (B) The number of F4/80+ cells that crossed to the lower surface of the insert membrane when peritoneal cells were exposed to ODN 2088 in the absence of astrocytes or astrocyte CM [p = 0.2631, independent-sample t-test, two-tailed]. The experiment was independently repeated six times, and the mean of six experiments (n = 6) is shown. Data are presented as mean ± SEM.
Hyperscaling for polymer rings
Creators: name: Duplantier, Bertrand
Publisher: name: arXiv
Year: 1994
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: The statistics of a long closed self-avoiding walk (SAW) or polymer ring on a $ d $-dimensional lattice obeys hyperscaling. The combination $ p_N \left\langle R^2 \right\rangle^{ d/2}_Nμ^{ -N}, $ (where $ p_N $ is the number of configurations of an oriented and rooted $ N $-step ring, $ \left\langle R^2 \right\rangle_ N $ a typical average size squared, and $ μ$ the SAW effective connectivity constant of the lattice) is equal for $ N \longrightarrow \infty $ to a lattice-dependent constant times a universal amplitude $ A(d). $ The latter amplitude is calculated directly from the minimal continuous Edwards model to second order in $ \varepsilon \equiv 4-d. $ The case of rings at the upper critical dimension $ d=4 $ is also studied. The results are checked against field theoretical calculations, and former simulations. As a consequence, we show that the universal constant $ λ$ appearing to second order in $ \varepsilon $ in all critical phenomena amplitude ratios is equal to $ λ= {1 \over 18} \left[ψ^{ \prime}( 1/6)+ψ^{ \prime}( 1/3) \right]-{4π^ 2 \over 27}. $
On Direct Integral Expansion for Periodic Block-Operator Jacobi Matrices and Applications
Creators: name: Golinskii, Leonid
name: Kutsenko, Anton
Publisher: name: arXiv
Year: 2018
Subjects: subject: Spectral Theory (math.SP)
subject: Classical Analysis and ODEs (math.CA)
subject: FOS: Mathematics
subject: 47B36, 47B39, 35P15

description: We construct a functional model (direct integral expansion) and study the spectra of certain periodic block-operator Jacobi matrices, in particular, of general 2D partial difference operators of the second order. We obtain the upper bound, optimal in a sense, for the Lebesgue measure of their spectra. The examples of the operators for which there are several gaps in the spectrum are given.
The Geometry of Most Probable Trajectories in Noise-Driven Dynamical Systems
Creators: name: Neu, John C.
name: Ghanta, Akhil
name: Teitsworth, Stephen
Publisher: name: arXiv
Year: 2018
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: This paper presents a heuristic derivation of a geometric minimum action method that can be used to determine most-probable transition paths in noise-driven dynamical systems. Particular attention is focused on systems that violate detailed balance, and the role of the stochastic vorticity tensor is emphasized. The general method is explored through a detailed study of a two-dimensional quadratic shear flow which exhibits bifurcating most-probable transition pathways.
description: 8 pages, 7 figures
Moduli spaces of colored graphs
Creators: name: Berghoff, Marko
name: Mühlbauer, Max
Publisher: name: arXiv
Year: 2018
Subjects: subject: Algebraic Topology (math.AT)
subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: 55-XX (Primary), 81T18 (Secondary)

description: We introduce moduli spaces of colored graphs, defined as spaces of non-degenerate metrics on certain families of edge-colored graphs. Apart from fixing the rank and number of legs these families are determined by various conditions on the coloring of their graphs. The motivation for this is to study Feynman integrals in quantum field theory using the combinatorial structure of these moduli spaces. Here a family of graphs is specified by the allowed Feynman diagrams in a particular quantum field theory such as (massive) scalar fields or quantum electrodynamics. The resulting spaces are cell complexes with a rich and interesting combinatorial structure. We treat some examples in detail and discuss their topological properties, connectivity and homology groups.
Additional file 1 of The duration of chemoprophylaxis against malaria after treatment with artesunate-amodiaquine and artemether-lumefantrine and the effects of pfmdr1 86Y and pfcrt 76T: a meta-analysis of individual patient data
Creators: name: Bretscher, Michael
name: Dahal, Prabin
name: Griffin, Jamie
name: Stepniewska, Kasia
name: Bassat, Quique
name: Baudin, Elisabeth
name: D’Alessandro, Umberto
name: Djimde, Abdoulaye
name: Dorsey, Grant
name: Espié, Emmanuelle
name: Fofana, Bakary
name: González, Raquel
name: Juma, Elizabeth
name: Karema, Corine
name: Lasry, Estrella
name: Lell, Bertrand
name: Lima, Nines
name: Menéndez, Clara
name: Mombo-Ngoma, Ghyslain
name: Moreira, Clarissa
name: Nikiema, Frederic
name: Ouédraogo, Jean
name: Staedke, Sarah
name: Tinto, Halidou
name: Valea, Innocent
name: Yeka, Adoke
name: Ghani, Azra
name: Guerin, Philippe
name: Okell, Lucy
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Mathematical Sciences not elsewhere classified
subject: Science Policy
subject: Computational Biology

description: Additional file 1: Table S1. Risk factors for reinfection: multivariable analysis with pfcrt 76T. Data from AS-AQ and AL trial arms were analyzed separately using accelerated failure-time analysis. Regression coefficients are the ratio of time to reinfection, such that a coefficient > 1 indicates a longer time to reinfection. Covariates significantly associated with reinfection time after adjusting for EIR (Table 3, main text) were included in the final model. The prevalence of pfmdr1 86Y also had a significant effect in a multivariable model with the same covariates (Table 3, main text) but could not be included in the same model with pfcrt 76T due to strong correlation between the two variables. Models assume a log-normal time to reinfection and random site effects.
Additional file 1 of Indirect costs associated with out-of-country referral for proton therapy: a survey of adult and pediatric patients in Alberta, Canada
Creators: name: Middleton, Jacqueline
name: Black, Karina
name: Ghosh, Sunita
name: Eisenstat, David D.
name: Patel, Samir
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 60506 Virology

description: Additional file 1: Appendix 1. Portable Document Format. REDCap Electronic Survey.
Phalaena matronula Linnaeus, 1758, spec. nov.
Creators: name: Linnaeus, Carolus
Publisher: name: Laurentius Salvius
Year: 1758
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Noctuidae
Phalaena
Phalaena matronula

description: Phalaena matronula [spec. nov.]
P. Noctua spirilinguis laevis, alis superioribus griseis: exterius flavo maculatis; inferioribus nigro maculatis. �
Roes. ins. 3. t. 39. f. 1, 2.
Habitat in Germania.
description: Published as part of Linnaeus, Carolus, 1758, Systema Naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Stockholm :Laurentius Salvius on page 509, DOI: 10.5962/bhl.title.542, http://zenodo.org/record/3922206
Braneworld gravity within non-conservative gravitational theory
Creators: name: Fabris, J. C.
name: Caramês, Thiago R. P.
name: da Silva, J. M. Hoff
Publisher: name: arXiv
Year: 2018
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We investigate the braneworld gravity starting from the non-conservative gravitational field equations in a five-dimensional bulk. The approach is based on the Gauss-Codazzi formalism along with the study of the braneworld consistency conditions. The effective gravitational equations on the brane are obtained and the constraint leading to a brane energy-momentum conservation is analyzed.
description: 7 pages
Enriching the Human Phenotype Ontology with inferred axioms from textual descriptions
Creators: name: Shahad Kudama
name: Berlanga, Rafael
name: Jimenez-Ruiz, Ernesto
Publisher: name: Semantic Web Applications and Tools for Healthcare and Life Sciences
Year: 2018
Subjects: subject: 80702 Health Informatics
subject: FOS: Media and communications
subject: 80301 Bioinformatics Software
subject: FOS: Computer and information sciences
subject: Cheminformatics
subject: 60102 Bioinformatics

description: The Human Phenotype Ontology (HP) is a reference vocabulary of human phenotypic abnormalities. HP, apart from the textual information (general definitions, descriptions, synonyms, etc.) of each ontology concept, also provides computer-readable logical definitions (axioms) of terms that will allow human phenotypic abnormalities to be related to entities from anatomy, pathology, bio- chemistry and other areas. In this paper we present a prototype to generate new axiomatic knowledge from the textual descriptions of each HP term. The proto- type (i) detects terms in the textual descriptions and not found in the given logical expressions, (ii) generates pair combinations of those terms, (iii) builds triples after detecting the most probable relation between the pair of terms using a sta- tistical model and, finally, (iv) suggests the most probable triples to the user so she can decide which ones can be added to the original axioms.
Effects of Ericoid Mycorrhizal Fungi on Growth and Salt Tolerance of Blueberry (Vaccinium myrtilloides), Lingonberry (Vaccinium vitis-idaea), and Labrador tea (Rhododendron groenlandicum): Implications for Oil Sands Reclamation
Creators: name: Fadaei, Sepideh
Publisher: name: University of Alberta Libraries
Year: 2019

Abstract
Additional file 1 of Wild ungulate species differ in their contribution to the transmission of Ixodes ricinus-borne pathogens
Creators: name: Fabri, Nannet D.
name: Sprong, Hein
name: Hofmeester, Tim R.
name: Heesterbeek, Hans
name: Donnars, Björn F.
name: Widemo, Fredrik
name: Ecke, Frauke
name: Cromsigt, Joris P. G. M.
Publisher: name: figshare
Year: 2021
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Table S1. Number of individuals per ungulate species included in the study. Table S2. Proportion (%) of ticks found on different body parts of the five studied ungulate species. Table S3. Summary of feeding larvae and feeding nymphs on ears, feeding females on groin and axilla and non-feeding males on complete carcasses on five ungulate species. Table S4. Standardized model estimates with 95% confidence intervals for the analysis of infestation prevalence with non-feeding males. Table S5. Standardized model estimates with 95% confidence intervals for the analysis of infestation prevalence (A) and intensity (B) with feeding females. Table S6. Infection prevalence of tick-borne pathogens in feeding Ixodes ricinus ticks from five studied ungulate species. Table S7. Standardized model estimates with 95% confidence intervals for the analysis of infestation prevalence (A) and intensity (B) with feeding nymphs. Table S8. Sequencing results from Borrelia burgdorferi (s.l.) positive ticks collected from ungulates. Table S9. Standardized model estimates with 95% confidence intervals for the analysis of the infection prevalence of Anaplasma phagocytophilum in feeding nymphs. Table S10. Standardized model estimates with 95% confidence intervals for the analysis of the infection prevalence of Borrelia burgdorferi (s.l.) in feeding nymphs. Table S11. Sequencing results from Babesia ssp. positive ticks collected from ungulates. Figure S1. Map of Sweden with the study area in green. Figure S2. Larval (A), nymphal (B) and female (C) tick burden on the studied ungulate species. Tick burden, as calculated by formula 1, is given with 84% bootstrapped, bias-corrected, confidence intervals to show differences among ungulate species with a significance with an alpha value of 0.05. Figure S3. Infection intensity in larvae and nymphs from the studied ungulate species. Infection intensity, as calculated by formula 2, is given with 84% bootstrapped, bias-corrected, confidence intervals to show differences among ungulate species with a significance with an alpha value of 0.05. The four graphs show the Anaplasma phagocytophilum infection intensity in larvae (A) and nymphs (B) and the Borrelia burgdorferi (s.l.) infection intensity in larvae (C) and nymphs (D).
Gravitational Lensing as a Probe of Quintessence
Creators: name: Cooray, Asantha R.
name: Huterer, Dragan
Publisher: name: arXiv
Year: 1999
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: A large number of cosmological studies now suggest that roughly two-thirds of the critical energy density of the Universe exists in a component with negative pressure. If the equation of state of such an energy component varies with time, it should in principle be possible to identify such a variation using cosmological probes over a wide range in redshift. Proper detection of any time variation, however, requires cosmological probes beyond the currently studied range in redshift of $\sim$ 0.1 to 1. We extend our analysis to gravitational lensing statistics at high redshift and suggest that a reliable sample of lensed sources, out to a redshift of $\sim$ 5, can be used to constrain the variation of the equation of state, provided that both the redshift distribution of lensed sources and the selection function involved with the lensed source discovery process are known. An exciting opportunity to catalog an adequate sample of lensed sources (quasars) to probe quintessence is now available with the ongoing Sloan Digital Sky Survey. Writing $w(z)\approx w_0 + z (dw/dz)_0$, we study the expected accuracy to which the equation of state today $w_0$ and its rate of change $(dw/dz)_0$ can simultaneously be constrained. Such a determination can rule out some missing-energy candidates, such as classes of quintessence models or a cosmological constant.
description: Accepted for publication in ApJ Letters (4 pages, including 4 figures)
Large physical spin approach for strongly correlated electrons
Creators: name: Angelucci, A.
name: Sorella, S.
name: Poilblanc, D.
Publisher: name: arXiv
Year: 1994
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: We present a novel approach for a systematic large--spin expansion of the $t$-$J$ Hamiltonian which enables us to work without the constraint of no double occupancy. In our scheme we can perform the large--spin limit ensuring that the low energy spin excitations are in {\em exact} correspondence with the physical excitations of the $s={1\over2}$ Hilbert space. As a consequence, we expect a smooth dependence of the physical quantities on the expansion parameter $1/ s$. As a first application of the method we study the case of a single hole in a Néel background. A systematic expansion in fluctuations about this stable solution indicates that by increasing $t/J$ the quasiparticle weight strongly depends on the momentum carried by the hole. Results, obtained on small lattice sizes, are found in excellent agreement with exact diagonalization data.
description: RevTeX 3.0 + 2 postscript figures appended (search for FIG1a and FIG1b ) revised, to appear in Phys. Lett. A
A two-parameter extension of the Urbanik semigroup
Creators: name: Berg, Christian
Publisher: name: arXiv
Year: 2018
Subjects: subject: Complex Variables (math.CV)
subject: FOS: Mathematics
subject: 60E07, 60B15, 44A60

description: We prove that s_n(a,b)=Γ(an+b)/Γ(b), n=0,1,\ldots is an infinitely divisible Stieltjes moment sequence for arbitrary a,b>0. Its powers s_n(a,b)^c, c>0 are Stieltjes determinate if and only if ac\le 2. The latter was conjectured in a paper by Lin (ArXiv: 1711.01536) in the case b=1. We describe a product convolution semigroup τ_c(a,b), c>0 of probability measures on the positive half-line with densities e_c(a,b) and having the moments s_n(a,b)^c. We determine the asymptotic behaviour of e_c(a,b)(t) for t\to 0 and for t\to\infty, and the latter implies the Stieltjes indeterminacy when ac>2. The results extend previous work of the author and J. L. López and lead to a convolution semigroup of probability densities (g_c(a,b)(x))_{c>0} on the real line. The special case (g_c(a,1)(x))_{c>0} are the convolution roots of the Gumbel distribution with scale parameter a>0. All the densities g_c(a,b)(x) lead to determinate Hamburger moment problems.
description: 16 pages
title: ADCO, Boursier de Cîteaux : comptes (1489-1493) (11 H 1166), f. 00315
Creators: name: de la Côte-d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: Petot, Frédéric
name: CBMA/CG21/F.PETOT/2019
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: comptes
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Boursier de Cîteaux : comptes (1489-1493), Archives départementales de la Côte-d'Or, (11 H 1166). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Boursier de Cîteaux : comptes (1489-1493), Archives départementales de la Côte-d'Or, (11 H 1166), f. 00315, in Projet CBMA - Corpus Burgundiae Medii Aevi \[Ressource en ligne\], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Resolution of an ambiguity in dynamo theory and its consequences for back reaction studies
Creators: name: Blackman, Eric G.
name: Field, George B.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: An unsolved problem in turbulent dynamo theory is the ``back reaction'' problem: to what degree does the mean magnetic field suppress the turbulent dynamo coefficients which are needed to drive its growth? The answer will ultimately derive from a combination of numerical and analytical studies. Here we show that analytic approaches to the dynamo and back reaction problems require one to separate turbulent quantities into two components: those influenced by the mean field (which are therefore anisotropic) and those independent of the mean field (and are therefore isotropic), no matter how weak the mean field is. Upon revising the standard formalism to meet this requirement, we find that: (1) The two types of components often appear in the same equation, so that standard treatments, which do not distinguish between them, are ambiguous. (2) The usual first-order smoothing approximation that is necessary to make progress in the standard treatment is unnecessary when the distinction is made. (3) In contrast to previous suggestions, the correction to the dynamo $\a$ coefficient found by Pouquet et al (1976) is actually independent of the mean field, and therefore cannot be interpreted as a quenching.
description: 13 pages, LaTeX, Submitted to ApJ
Phalaena fuliginosa Linnaeus, 1758, spec. nov.
Creators: name: Linnaeus, Carolus
Publisher: name: Laurentius Salvius
Year: 1758
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Noctuidae
Phalaena
Phalaena fuliginosa

description: Phalaena fuliginosa [spec. nov.]
P. Noctua spirilinguis laevis, alis deflexis fuliginosis puncto nigro; inferioribus rubris nigro-maculatis.
Habitat in Sinapi, Rapa, Rumice.
Larva pilosa, ferruginea.
description: Published as part of Linnaeus, Carolus, 1758, Systema Naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Stockholm :Laurentius Salvius on page 509, DOI: 10.5962/bhl.title.542, http://zenodo.org/record/3922206
title: ADCO, Cartulaire de Cîteaux pour les domaines de Saint-Jean de Losne et Losne (XVIIIe siècle), Cart. 198-01 (11 H 1055), 185 folios, f. 0068
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2019
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire

description: Cartulaire de Cîteaux pour les domaines de Saint-Jean de Losne et Losne (XVIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 198-01 (11 H 1055), 185 folios, f. 0068, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de Cîteaux pour les domaines de Saint-Jean de Losne et Losne (XVIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 198-01 (11 H 1055), 185 folios, f. 0068, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
ReSyst: a novel technique to Reduce the Systematic uncertainty for precision measurements
Creators: name: Van Mulders, Petra
Publisher: name: arXiv
Year: 2018
Subjects: subject: Data Analysis, Statistics and Probability (physics.data-an)
subject: High Energy Physics - Experiment (hep-ex)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We are in an era of precision measurements at the Large Hadron Collider. The precision that can be achieved on some of those is limited however due to large systematic uncertainties. This paper introduces a new technique to reduce the total systematic uncertainty by quantifying the systematic impact of single events and correlating it with event observables to identify classes of events that are more sensitive to systematic effects. A proof of concept is presented by means of a simplified top quark mass estimator applied on simulated events. Even without a thorough optimization, it is shown that the total systematic uncertainty can be reduced by at least 30%.
Predicting the spectrum of TCR repertoire sharing with a data-driven model of recombination
Creators: name: Elhanati, Yuval
name: Sethna, Zachary
name: Callan, Curtis G.
name: Mora, Thierry
name: Walczak, Aleksandra M.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Genomics (q-bio.GN)
subject: FOS: Biological sciences

description: Despite the extreme diversity of T cell repertoires, many identical T-cell receptor (TCR) sequences are found in a large number of individual mice and humans. These widely-shared sequences, often referred to as `public', have been suggested to be over-represented due to their potential immune functionality or their ease of generation by V(D)J recombination. Here we show that even for large cohorts the observed degree of sharing of TCR sequences between individuals is well predicted by a model accounting for by the known quantitative statistical biases in the generation process, together with a simple model of thymic selection. Whether a sequence is shared by many individuals is predicted to depend on the number of queried individuals and the sampling depth, as well as on the sequence itself, in agreement with the data. We introduce the degree of publicness conditional on the queried cohort size and the size of the sampled repertoires. Based on these observations we propose a public/private sequence classifier, `PUBLIC' (Public Universal Binary Likelihood Inference Classifier), based on the generation probability, which performs very well even for small cohort sizes.
Optimizing Semantic Data Transformation using High Performance Computing Techniques
Creators: name: Bernabe-Dıaz, Jose Antonio
name: Marıa Del Carmen Legaz-Garcıa
name: Garcıa, Jose M.
name: Jesualdo Tomás Fernández-Breis
Publisher: name: Semantic Web Applications and Tools for Healthcare and Life Sciences
Year: 2018
Subjects: subject: 80702 Health Informatics
subject: FOS: Media and communications
subject: 80301 Bioinformatics Software
subject: FOS: Computer and information sciences
subject: Cheminformatics
subject: 60102 Bioinformatics

description: The growth of the Life Science Semantic Web is illustrated by the increasing number of resources available in the Linked Open Data Cloud. Our SWIT tool supports the generation of semantic repositories, and it has been successfully applied in the field of orthology resources, helping to achieve objectives of the Quest for Orthologs consortium. How- ever, our experience with SWIT reveals that the time required for the generation of datasets is longer than desired. In this work we present the application of High Performance Computing techniques, mainly memory optimization and parallelization, to speed up SWIT.
Additional file 1 of Markov chain Monte Carlo Gibbs sampler approach for estimating haplotype frequencies among multiple malaria infected human blood samples
Creators: name: Ken-Dror, Gie
name: Sharma, Pankaj
Publisher: name: figshare
Year: 2021
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Includes data that support and expand some of the interpretations and conclusions drawn in the main text.
Power Spectrum Correlations Induced by Non-Linear Clustering
Creators: name: Scoccimarro, Roman
name: Zaldarriaga, Matias
name: Hui, Lam
Publisher: name: arXiv
Year: 1999
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Gravitational clustering is an intrinsically non-linear process that generates significant non-Gaussian signatures in the density field. We consider how these affect power spectrum determinations from galaxy and weak-lensing surveys. Non-Gaussian effects not only increase the individual error bars compared to the Gaussian case but, most importantly, lead to non-trivial cross-correlations between different band-powers. We calculate the power-spectrum covariance matrix in non-linear perturbation theory (weakly non-linear regime), in the hierarchical model (strongly non-linear regime), and from numerical simulations in real and redshift space. We discuss the impact of these results on parameter estimation from power spectrum measurements and their dependence on the size of the survey and the choice of band-powers. We show that the non-Gaussian terms in the covariance matrix become dominant for scales smaller than the non-linear scale, depending somewhat on power normalization. Furthermore, we find that cross-correlations mostly deteriorate the determination of the amplitude of a rescaled power spectrum, whereas its shape is less affected. In weak lensing surveys the projection tends to reduce the importance of non-Gaussian effects. Even so, for background galaxies at redshift z=1, the non-Gaussian contribution rises significantly around l=1000, and could become comparable to the Gaussian terms depending upon the power spectrum normalization and cosmology. The projection has another interesting effect: the ratio between non-Gaussian and Gaussian contributions saturates and can even decrease at small enough angular scales if the power spectrum of the 3D field falls faster than 1/k^2.
description: 34 pages, 15 figures. Revised version, includes a clearer explanation of why the hierarchical ansatz does not provide a good model of the covariance matrix in the non-linear regime, and new constraints on the amplitudes Ra and Rb for general 4-pt function configurations in the non-linear regime
MOESM5 of Improved utilization of soybean meal through fermentation with commensal Shewanella sp. MR-7 in turbot (Scophthalmus maximus L.)
Creators: name: Li, Chaoqun
name: Zhang, Beili
name: Wang, Xin
name: Pi, Xionge
name: Wang, Xuan
name: Zhou, Huihui
name: Mai, Kangsen
name: He, Gen
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Physiology
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Additional file 5: Table S5. The comparisons of quality parameters of FSBM by Shewanella sp. MR-7 and other representative strains. Figure S2. Rarefaction curves of observed species number for all the intestinal microbiome samples.
Observation of Interactions between Trapped Ions and Ultracold Rydberg Atoms
Creators: name: Ewald, N. V.
name: Feldker, T.
name: Hirzler, H.
name: Fürst, H.
name: Gerritsma, R.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Atomic Physics (physics.atom-ph)
subject: FOS: Physical sciences

description: We report on the observation of interactions between ultracold Rydberg atoms and ions in a Paul trap. The rate of observed inelastic collisions, which manifest themselves as charge transfer between the Rydberg atoms and ions, exceeds that of Langevin collisions for ground state atoms by about three orders of magnitude. This indicates a huge increase in interaction strength. We study the effect of the vacant Paul trap's electric fields on the Rydberg excitation spectra. To quantitatively describe the exhibited shape of the ion loss spectra, we need to include the ion-induced Stark shift on the Rydberg atoms. Furthermore, we demonstrate Rydberg excitation on a dipole-forbidden transition with the aid of the electric field of a single trapped ion. Our results confirm that interactions between ultracold atoms and trapped ions can be controlled by laser coupling to Rydberg states. Adding dynamic Rydberg dressing may allow for the creation of spin-spin interactions between atoms and ions, and the elimination of collisional heating due to ionic micromotion in atom-ion mixtures.
description: 7 pages, 5 figures, including appendices. Note that the title has been changed in version 2
BioKB - Text Mining and Semantic Technologies for Biomedical Content Discovery
Creators: name: Biryukov, Maria
name: Groues, Valentin
name: Venkata Satagopam
name: Schneider, Reinhard
Publisher: name: Semantic Web Applications and Tools for Healthcare and Life Sciences
Year: 2018
Subjects: subject: 80702 Health Informatics
subject: FOS: Media and communications
subject: 80301 Bioinformatics Software
subject: FOS: Computer and information sciences
subject: Cheminformatics
subject: 60102 Bioinformatics

description: The ever-increasing number of publicly available biomedical articles calls for automatic information extraction from digitized publi- cations. We have implemented a pipeline which, by exploiting text min- ing and semantic technologies, helps researchers easily access semantic content of thousands of abstracts and full text articles from PubMed and Elsevier. The text mining component analyzes the articles content and extracts relations between a wide variety of concepts, extending the scope from proteins, chemicals and pathologies to biological processes and molecular functions. Moreover, the relations are extracted along with the context which specifies localization of the detected events, precon- ditions, temporal and logic order, mutual dependency and/or exclusion. Extracted knowledge is stored in a knowledge base publicly available for both, human and machine access, via web interface and SPARQL end- point. To address the data accessibility, reusability and interoperability, all the extracted relations are standardized using unique resource iden- tifiers (URIs) and a custom ontology based on Genia ontology.