cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Leptotrombidium (Leptotrombidium) xinjiangense Shao and Wen 1984
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Leptotrombidium
Leptotrombidium xinjiangense

description: Leptotrombidium (Leptotrombidium) xinjiangense Shao and Wen, 1984d:
PAL
Leptotrombidium xinjiangense, Stekolnikov 2013 [irregulare group]
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 144, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
MOESM1 of Quorum sensing of microalgae associated marine Ponticoccus sp. PD-2 and its algicidal function regulation
Creators: name: Wendan Chi
name: Zheng, Li
name: Changfei He
name: Han, Bin
name: Minggang Zheng
name: Gao, Wei
name: Chengjun Sun
name: Gefei Zhou
name: Xiangxing Gao
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Computational Biology

description: Additional file 1. Additional figures.
Leptotrombidium (Leptotrombidium) xishani Wen and Xiang 1984
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Leptotrombidium
Leptotrombidium xishani

description: Leptotrombidium (Leptotrombidium) xishani Wen and Xiang, 1984 n:
PAL [magnum group]
Leptotrombidium xishani, Stekolnikov 2013 [xishani group]
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 144, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Additional file 3: of Sharing interim trial results by the Data Safety Monitoring Board with those responsible for the trialâ  s conduct and progress: a narrative review
Creators: name: Debono, Victoria Borg
name: Mbuagbaw, Lawrence
name: Lehana Thabane
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: RAMESES checklist. (DOCX 18Â kb)
Mycale (Carmia) fistulifera
Creators: name: Van, Rob W. M.
name: Aryasari, Ratih
name: De, Nicole J.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Porifera
Demospongiae
Poecilosclerida
Mycalidae
Mycale
Mycale fistulifera

description: Mycale (Carmia) fistulifera (Row, 1911)
Esperella fistulifera Row, 1911: 336, text-fig. 17.
Mycale fistulifera; Burton 1926: 80 (no description).
Summary description. Characteristic shape, with undivided thick basal portion up to 12 x 4.5 cm in size, upon which are erect oscular tubes of 10 cm high. Surface optically smooth. Preserved color is muddy yellowish grey, consistency lax and easily damaged. Skeleton with many loose scattered megascleres but also with some slender irregular tracts of 3–8 spicules in cross section. Mycalostyles, slender, straight, 250 x 2–2.5 µm, anisochelae not numerous, scattered throughout the sponge, not forming rosettes, in two (?) size categories, the larger of which measures 23 µm, sigmas not numerous, but more frequent than the anisochelae, 35–40 µm.
Distribution. Suez, northern Red Sea, shallow depth.
description: Published as part of Van, Rob W. M., Aryasari, Ratih & De, Nicole J., 2021, Mycale species of the tropical Indo-West Pacific (Porifera, Demospongiae, Poecilosclerida), pp. 1-212 in Zootaxa 4912 (1) on page 83, DOI: 10.11646/zootaxa.4912.1.1, http://zenodo.org/record/4450930
Additional file 3: of Sharing interim trial results by the Data Safety Monitoring Board with those responsible for the trialâ  s conduct and progress: a narrative review
Creators: name: Debono, Victoria Borg
name: Mbuagbaw, Lawrence
name: Lehana Thabane
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: RAMESES checklist. (DOCX 18Â kb)
Leptotrombidium (Leptotrombidium) yasuokai
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Leptotrombidium
Leptotrombidium yasuokai

description: Leptotrombidium (Leptotrombidium) yasuokai (Sasa, Kawashima and Hiromatsu, 1952):
PAL
Trombicula yasuokai Sasa, Kawashima and Hiromatsu, 1952
Leptotrombidium (Leptotrombidium) yasuokai, Vercammen-Grandjean & Langston 1976
Leptotrombidium yasuokai, Stekolnikov 2013 [13 group]
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 144, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Mycale (Carmia) madraspatana Annandale 1914
Creators: name: Van, Rob W. M.
name: Aryasari, Ratih
name: De, Nicole J.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Porifera
Demospongiae
Poecilosclerida
Mycalidae
Mycale
Mycale madraspatana

description: Mycale (Carmia) madraspatana Annandale, 1914
Mycale madraspatana Annandale, 1914: 154, pl. X fig. 3, pl. XI fig. 4; Burton 1937: 24, pl. II fig. 12; Ali 1956: 295; Pattanayak 2009: 25.
? Mycale macilenta; Li 1986: 86 (Chinese), 110 (English), pl. I fig. 3, text-fig. 9 (not: Bowerbank 1866).
Summary description. Brick-red crusts on Mytilus mussels. The skeleton is confusingly described, but apparently there is not a clear ectosomal aegogropila-like tangential skeleton. Annandale’s description provided the following spicule data: mycalostyles 265–279 µm, anisochelae I (in rosettes) 43–52 µm, sigma I rare, size not given, toxas quite variable in length 140–352 µm. Burton’s (1937) description does not provide clarity over the presence or absence of an ectosomal skeleton. For the spicules he gives: mycalostyles 280 x 5 µm, anisochelae I 48 µm, anisochelae II 20 µm, sigma I 80 µm, toxas 140–350 µm.
Distribution. Madras (= Chennai) Harbor, depth 1–2 m; possibly South China.
Comments. For the time being we maintain this species as separate, but its published descriptions make it very similar to Mycale (Carmia) suezza (Row, 1911), cf. below. There is only a single, possibly not important, difference with Mycale (Carmia) militaris Annandale, 1924 (see below), viz. the anisochelae of that species apparently do not form rosettes. Li’s (1986) description of the NE Atlantic species M. macilenta from South China keys out as possibly belonging to this species, but he also reports small sigmas of 26–30 µm.
Outside our target region, New Zealand Mycale (Carmia) tasmani Bergquist & Fromont, 1988 has similarities with M. (C.) madraspatana and M. (C.) suezza (Row, 1911) (cf. below) in the spicule complement, the three allegedly having differences in the size categories of the anisochelae. M. (C.) tasmani has three categories, confirmed by us from a spicule suspension of the holotype (?, labeled as NNMZ 167) donated to the ZMA collection by Eduardo Hajdu. M. (C.) suezza has two anisochelae categories and M. (C.) madraspatana has probably at least two as well according to Burton (1937), although Annandale mentions only a single category. These three species should be compared carefully in order two clarify their status as separate species.
description: Published as part of Van, Rob W. M., Aryasari, Ratih & De, Nicole J., 2021, Mycale species of the tropical Indo-West Pacific (Porifera, Demospongiae, Poecilosclerida), pp. 1-212 in Zootaxa 4912 (1) on page 83, DOI: 10.11646/zootaxa.4912.1.1, http://zenodo.org/record/4450930
Phytoecia argus
Creators: name: Gradinarov, Denis
name: Gjonov, Ilia
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Phytoecia
Phytoecia argus

description: Phytoecia argus (G. F. Frölich, 1793)
(Fig. 1C, Fig. 2A, B)
Material examined: Bulgaria: W Stara Planina range, Chepun Mts., 2,5 km NW Golemo Malovo Vill., 42°57’17.9’’N 22°59’06.6’’E, 1065 m., dry calcareous grassland, 11.05.2019, 1 ♂, net sweeping, I. Gjonov leg. (BFUS); the same data, but 42°57’17.5’’N 22°59’12.6’’E, 1078 m., 17.05.2019, 3 ♂♂, 2 ♀♀, hand collection, D. Gradinarov & I. Gjonov leg. (BFUS). All
specimens collected by hand collection were found individually around the stems of Trinia glauca (L.) Dumort. (Apiaceae), on the ground (Fig. 1B, C).
Species of the genus Seseli L. (Apiaceae) are most commonly cited as host plants of Ph. argus (Bense 1995, Rejzek et al. 2001, Sama 2002, Migliaccio et al. 2007, Hoskovec et al. 2019). Known host plants of Seseli genus are summarized by Rejzek et al. (2001), including the following species – S. pallasii Besser (syn. S. varium Trev.), S. annuum L., S. montanum subsp. tommasinii (Rchb. f.) (syn. S. tommasinii Rchb. f.) and S. devenyense Simonk. Along with this more accepted view, Zettel (2006) and Merkl & Szél (2012) reported a relationship of Ph. argus also with T. glauca from the same plant family for Austria and Hungary, respectively. According to Merkl & Szél (2012), beetles can be found as early as April at the base of both Trinia Hoffm. and Seseli host plants. Adult beetles are active from April to June and the larval development is at the roots of both T. glauca and Seseli spp. (Merkl & Szél 2012). Our record seems to confirm the ability of Ph. argus to use T. glauca as a host plant as well.
The distribution of Ph. argus seems to be restricted to the remnants of natural steppe habitats in the Western Palaearctic (Schoppmann 1990, Pokorný 2005, Zettel 2006, Merkl 2008, Shapovalov 2012, Dedyukhin 2016). We conclude that the species may be useful as an indicator species for the assessment of the conservation status of natural steppe habitats in Europe.
The mountain petrophytic steppes are widespread in the low mountain regions of Western Bulgaria at an altitude of 500 to 1500 m (Tzonev et al. 2011). The first report of Ph. argus from Bulgaria (Ganev 1984) lacks information on the habitat type and host plant, but petrophytic steppes are also present in the area of the Zemen Gorge. The species is likely to be more widespread in suitable habitats in Western Bulgaria. In faunistic studies, host plants of both Seseli and Trinia genera must be checked for the presence of beetles.
description: Published as part of Gradinarov, Denis & Gjonov, Ilia, 2020, New record of the steppe longhorn beetle species Phytoecia (Musaria) argus (G. F. Frölich, 1793) (Cerambycidae: Lamiinae) in Bulgaria, pp. 1-4 in ZooNotes 155 on pages 1-3, DOI: 10.5281/zenodo.3753054
Mycale (Carmia) maunakea De Laubenfels 1951
Creators: name: Van, Rob W. M.
name: Aryasari, Ratih
name: De, Nicole J.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Porifera
Demospongiae
Poecilosclerida
Mycalidae
Mycale
Mycale maunakea

description: Mycale (Carmia) maunakea De Laubenfels, 1951
Mycale maunakea De Laubenfels, 1951 a: 261, fig. 7; Bergquist 1967: 159 (misspelled as manuakea).
Mycale cecilia sensu De Laubenfels 1950: 25, fig. 15; Bergquist 1977: 65; Kelly et al. 2003: Appendix p. 6 (?not: Mycale cecilia De Laubenfels, 1936 b)
Summary description. Encrusting, 1 mm thick, pale pink in life, soft. Oscules about 200 µm. Ectosome contains numerous microscleres but no megascleres. Skeleton formed by spicule tracts forming columns 30–40 µm in diameter, 100–200 µm apart, that do not anastomose or branch. At the surface they make dermal tufts. Mycalostyles 160–240 x 2–6 µm, anisochelae, narrow, almost isochelae-like, in one (?) size, 13–22 µm, sigmas 37–42 µm.
Distribution. Island of Hawaii, Hilo Harbor, Coconut Island, depth 2 m.
Comment. Mycale (Carmia) cecilia sensu Carballo & Cruz-Barraza 2010 (p. 180 in part, the Hawaiian record) may be conspecific with this species, because these authors synonymized the present species with De Laubenfels’ (1936b) M. (C.) cecilia, a species from the Pacific coast of Panama. Mycale (Carmia) cecilia sensu Kelly et al. 2003 from Micronesia (Northern Mariana Islands, Saipan), identified by Michelle Kelly, may also be referred here. Without closer comparison between the present species and the type of M. (C.) cecilia it appears prudent to keep M. (C.) maunakea and M. (C.) cecilia as separate species.
description: Published as part of Van, Rob W. M., Aryasari, Ratih & De, Nicole J., 2021, Mycale species of the tropical Indo-West Pacific (Porifera, Demospongiae, Poecilosclerida), pp. 1-212 in Zootaxa 4912 (1) on page 83, DOI: 10.11646/zootaxa.4912.1.1, http://zenodo.org/record/4450930
Leptotrombidium (Leptotrombidium) yentanshanense
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Leptotrombidium
Leptotrombidium yentanshanense

description: Leptotrombidium (Leptotrombidium) yentanshanense (Chu, 1964):
PAL
Trombicula yentangshanensis Chu, 1964
Leptotrombidium (Leptotrombidium) yentanshanense, Wen 1984 k
Leptotrombidium yentanshanense, Stekolnikov 2013 [9 group]
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 144, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Additional file 2: of Sharing interim trial results by the Data Safety Monitoring Board with those responsible for the trialâ  s conduct and progress: a narrative review
Creators: name: Debono, Victoria Borg
name: Mbuagbaw, Lawrence
name: Lehana Thabane
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: Citations of included articles for review. (DOCX 33Â kb)
Mycale (Carmia) militaris Annandale 1914
Creators: name: Van, Rob W. M.
name: Aryasari, Ratih
name: De, Nicole J.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Porifera
Demospongiae
Poecilosclerida
Mycalidae
Mycale
Mycale militaris

description: Mycale (Carmia) militaris Annandale, 1914
Mycale aegagropila var. militaris Annandale, 1914: 151, pl. X fig. 2; Ali 1956: 295 (misspelled as aegagsopila).
Mycale aegagropala (sic) var. milataris (sic); Pattanayak 2009: 24.
Summary description. Thin film on Mytilus mussels. Bright scarlet in life, turning dull green in preservation. No description of skeleton but stated to be similar to Esperella aegagropila sensu Vosmaer & Pekelharing 1897. This description concerns Dutch populations of Mycale (Carmia) encrusting oysters. It is likely that these authors studied Mycale (Carmia) micracanthoxea Buizer & Van Soest, 1977, which is commonly found in the oysterbeds in SE Netherlands. Annandale’s material is thus likely to belong to subgenus Carmia. Mycalostyles 240–270 µm, anisochelae I (not in rosettes) 44 µm, sigmas I 95 µm, toxas 148–200 µm.
Distribution. Madras (= Chennai) Harbor, depth 1– 2 m.
Comment. This description reminds strongly of Mycale (Carmia) madraspatana Annandale, 1914. The only difference is the presence of rosettes of anisochelae in that species. Ali (1956) reports sigmas of 120 µm.
description: Published as part of Van, Rob W. M., Aryasari, Ratih & De, Nicole J., 2021, Mycale species of the tropical Indo-West Pacific (Porifera, Demospongiae, Poecilosclerida), pp. 1-212 in Zootaxa 4912 (1) on page 84, DOI: 10.11646/zootaxa.4912.1.1, http://zenodo.org/record/4450930
Leptotrombidium (Leptotrombidium) yigongense Wu and Wen 1984
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Leptotrombidium
Leptotrombidium yigongense

description: Leptotrombidium (Leptotrombidium) yigongense Wu and Wen, 1984b:
PAL
Leptotrombidium yigongense, Stekolnikov 2013 [asetulum group]
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 144, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Leptotrombidium (Leptotrombidium) yindun Wen and Wu 1984
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Leptotrombidium
Leptotrombidium yindun

description: Leptotrombidium (Leptotrombidium) yindun Wen and Wu, 1984c:
PAL
Leptotrombidium yindun, Stekolnikov 2013 [scutellare group]
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 144, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Mycale (Carmia) mytilorum Annandale 1914
Creators: name: Van, Rob W. M.
name: Aryasari, Ratih
name: De, Nicole J.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Porifera
Demospongiae
Poecilosclerida
Mycalidae
Mycale
Mycale mytilorum

description: Mycale (Carmia) mytilorum Annandale, 1914
Mycale mytilorum Annandale, 1914: 152, pl. X fig. 1, pl. XI figs 2–3; Burton 1937: 24; Ali 1956: 284 (misspelled as mytiliorum); Pattanayak 2009: 25.
Summary description. Thin brick-red crust on Mytilus mussels. Skeleton consists of vertical bundles of mycalostyles, pushing up the ectosomal membrane, but no tangential ectosomal skeleton is present. Mycalostyles 180–260 x 4–5.5 µm, scarce anisochelae I (not in rosettes) 19 µm, sigmas 40 µm. No toxas.
Distribution. Madras (= Chennai) Harbor, 1–2 m depth.
Comment. Hard to distinguish from e.g. M. (C.) maunakea, but that species has pink life color.
description: Published as part of Van, Rob W. M., Aryasari, Ratih & De, Nicole J., 2021, Mycale species of the tropical Indo-West Pacific (Porifera, Demospongiae, Poecilosclerida), pp. 1-212 in Zootaxa 4912 (1) on page 84, DOI: 10.11646/zootaxa.4912.1.1, http://zenodo.org/record/4450930
Additional file 1: Table S1. of Comprehensive transcriptomic analysis of Tibetan Schizothoracinae fish Gymnocypris przewalskii reveals how it adapts to a high altitude aquatic life
Creators: name: Tong, Chao
name: Fei, Tian
name: Cunfang Zhang
name: Zhao, Kai
Publisher: name: Figshare
Year: 2017
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Summary of sequencing, assembly and analysis of G. przewalskii transcriptome. (DOCX 15 kb)
Mycale (Carmia) relicta Annandale 1924
Creators: name: Van, Rob W. M.
name: Aryasari, Ratih
name: De, Nicole J.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Porifera
Demospongiae
Poecilosclerida
Mycalidae
Mycale
Mycale relicta

description: Mycale (Carmia) relicta Annandale, 1924
Mycale relicta Annandale, 1924: 405, fig. 3; Pattanayak 2009: 26.
Summary description. Encrusting on a dead branch in a brackish lake (salinity 22.8%o), thickness 3 cm. Skeleton largely macerated and containing ingrown algal thallus. Mycalostyles fusiform with wide axial canal, 216–383 x 7–10 µm. Anisochelae, narrow, with lower median alae pointed and shape ‘retroverted’, in a single size 20–26 µm (not in rosettes). Sigmas, thin, in a single size, 44–60 µm.
Distribution. Verlaten Island, near Krakatoa, Western Indonesia, in brackish lake.
Comment. Again hard to distinguish from M. (C.) maunakea and M. (C.) mytilorum, but its peculiar chelashape may indicate specific distinctness.
description: Published as part of Van, Rob W. M., Aryasari, Ratih & De, Nicole J., 2021, Mycale species of the tropical Indo-West Pacific (Porifera, Demospongiae, Poecilosclerida), pp. 1-212 in Zootaxa 4912 (1) on page 84, DOI: 10.11646/zootaxa.4912.1.1, http://zenodo.org/record/4450930
Mycale (Carmia) stegoderma De Laubenfels 1954
Creators: name: Van, Rob W. M.
name: Aryasari, Ratih
name: De, Nicole J.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Porifera
Demospongiae
Poecilosclerida
Mycalidae
Mycale
Mycale stegoderma

description: Mycale (Carmia) stegoderma De Laubenfels, 1954
Carmia stegoderma De Laubenfels, 1954: 154, text-fig. 100.
Summary description. Yellowish brown-grey crust on dead coral, 7 cm in lateral expansion, 1–2 mm thick. There are very large subectosomal spaces, leaving only a thin choanosomal crust on the substratum. Megascleres mycalostyles of 500 x 6 µm occasionally forming bundles of up 130 µm in thickness. Microscleres anisochelae in two size categories, 40 and 15 µm (the latter being rare), a single category of sigmas, 33 µm, and a single category of toxas, 40 µm.
Distribution. Pohnpei, Federate States of Micronesia (East Caroline Islands), depth 4 m.
Comment. The combination of long mycalostyles with small toxas appears distinct among the Mycale (Carmia) species of the region.
description: Published as part of Van, Rob W. M., Aryasari, Ratih & De, Nicole J., 2021, Mycale species of the tropical Indo-West Pacific (Porifera, Demospongiae, Poecilosclerida), pp. 1-212 in Zootaxa 4912 (1) on pages 84-85, DOI: 10.11646/zootaxa.4912.1.1, http://zenodo.org/record/4450930
Leptotrombidium (Leptotrombidium) yongshengense Yu and Yang 1986
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Leptotrombidium
Leptotrombidium yongshengense

description: Leptotrombidium (Leptotrombidium) yongshengense Yu and Yang, 1986:
PAL
Leptotrombidium yongshengense, Stekolnikov 2013 [shuyui group] (see Note 8)
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 144, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Additional file 1: Table S1. of Genetic diversity and drug sensitivity studies on Eimeria tenella field isolates from Hubei Province of China
Creators: name: Tan, Li
name: Yalin Li
name: Yang, Xin
name: Qiyun Ke
name: Weiqiang Lei
name: Mudassar Mughal
name: Fang, Rui
name: Yanqin Zhou
name: Shen, Bang
name: Junlong Zhao
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified

description: Local commercial broiler farms in Hubei province from which Eimeria isolates were isolated. Table S2. Primers used in RAPD analysis by Sangon Biotech, Shanghai. Table S3. Primers used for PCR amplification of indicated genes. Table S4. The design of drug-sensitivity tests. Table S5. Identification results of Eimeria species using species specific primers amplifying the internal transcribed spacer 1 (ITS1) region. (DOC 126 kb)
Mycale (Carmia) suezza
Creators: name: Van, Rob W. M.
name: Aryasari, Ratih
name: De, Nicole J.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Porifera
Demospongiae
Poecilosclerida
Mycalidae
Mycale
Mycale suezza

description: Mycale (Carmia) suezza (Row, 1911)
Esperella suezza Row, 1911: 338, text-fig. 18.
Summary description. Irregular (preserved) dark grey mass, partly growing on a mussel. Surface slightly conulose but otherwise smooth. Consistency soft, easily fragmented. Skeleton consists of sinuously curved spicule tracts, branching but not anastomosing. Tracts variable in thickness, containing 2–6 spicules in the peripheral region, but in deeper parts may be 20–25 spicules thick. There are also many loose scattered megascleres. No ectosomal skeleton. Mycalostyles 320–330 x 4 µm, abundant anisochelae in two? size categories, the larger of which are 40 µm or less, sigmas 70 x 4 µm (occasionally tri-forked or swollen), toxas long, possibly raphidotoxa-like, but usually with abrupt median curve, 210–310 µm.
Distribution. Suez, northern Red Sea, shallow depth.
Comment. For the time being we maintain this species as separate, but its published description makes it very similar to the junior Mycale (Carmia) madraspatana Annandale, 1914. This is described as being a thin brick-red crust, but no other differences are apparent.
description: Published as part of Van, Rob W. M., Aryasari, Ratih & De, Nicole J., 2021, Mycale species of the tropical Indo-West Pacific (Porifera, Demospongiae, Poecilosclerida), pp. 1-212 in Zootaxa 4912 (1) on page 85, DOI: 10.11646/zootaxa.4912.1.1, http://zenodo.org/record/4450930
Mycale (Carmia) toxifera
Creators: name: Van, Rob W. M.
name: Aryasari, Ratih
name: De, Nicole J.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Porifera
Demospongiae
Poecilosclerida
Mycalidae
Mycale
Mycale toxifera

description: Mycale (Carmia) cf. toxifera (Dendy, 1896)
Esperella toxifer Dendy, 1896: 16
Carmia toxifera; Lévi 1963: 12, pl. 1C, text-fig. 7.
Mycale (Carmia) cf. toxifera; Calcinai et al. 2013: 44, figs 28A–G.
Mycale (Carmia) spec. Calcinai et al. 2013: 46, figs 29A–F.
Summary description and comments. From South East Australia, outside our regional limits, Dendy (1896) described cushion-shaped sponges with small oscules and fibrous skeleton, colored ochre in life. Mycalostyles 200 x 4 µm, anisochelae 10 µm, sigmas (rare) 12 µm, toxas 95 µm. Slightly outside our regional limit, Lévi reported massive yellow-colored Carmia toxifera from the central south coast of South Africa. Lévi’s material had mycalostyles, 210–225 x 3–7 µm, anisochelae, 10–11 µm, sigmas (rare), 16 µm and toxas (rare), 75–110 µm. The two descriptions by Calcinai et al. (2013) are apparently considered two different species. The unnamed brown-orange specimen from Indonesia (N Sulawesi), depth 7 m, was a very thin crust on an octocoral (Carijoa rissei). No specialized ectosomal skeleton. Plumose tracts of mycalostyles and scattered microscleres. Spicules include mycalostyles, 125–212.5 x 2 µm, anisochelae 12.5–17.5 µm and long thin symmetrical toxas with central inflexion, 62–380 µm. The authors refrained from naming the material as the preservation apparently was insufficient. If the spicule package that is described is the full complement, then it is possibly an undescribed species, although it is possible that it is a reduced specimen of Mycale (Carmia) toxifera lacking sigmas. There is an additional description of a thinly encrusting dull-orange to ochre Mycale (Carmia) cf. toxifera by Calcinai et al. from Hawaii, resembling the above specimen, but which included longer mycalostyles, 130–245 x 2–2.5 µm, anisochelae, 10–16 µm, sigmas, 17–32 µm and toxas 45–212 µm. Possibly, this is a more elaborate member of the same insufficiently known species, as Dendy and Lévi report sigmas and toxas being rare. If these assignments as the same species are correct, it indicates that this could be a widespread species in the region.
description: Published as part of Van, Rob W. M., Aryasari, Ratih & De, Nicole J., 2021, Mycale species of the tropical Indo-West Pacific (Porifera, Demospongiae, Poecilosclerida), pp. 1-212 in Zootaxa 4912 (1) on page 85, DOI: 10.11646/zootaxa.4912.1.1, http://zenodo.org/record/4450930
Additional file 1: of Identifying barriers to and facilitators of tuberculosis contact investigation in Kampala, Uganda: a behavioral approach
Creators: name: Ayakaka, Irene
name: Ackerman, Sara
name: Ggita, Joseph
name: Kajubi, Phoebe
name: Dowdy, David
name: Haberer, Jessica
name: Fair, Elizabeth
name: Hopewell, Philip
name: Handley, Margaret
name: Adithya Cattamanchi
name: Achilles Katamba
name: J. Davis
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: Computational Biology

description: Supplementary materials, including Supplemental Methods and Appendices containing Focus Group Discussion and Interview Guides. (DOCX 36 kb)
Mycale (Carmia) vermistyla Li 1986
Creators: name: Van, Rob W. M.
name: Aryasari, Ratih
name: De, Nicole J.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Porifera
Demospongiae
Poecilosclerida
Mycalidae
Mycale
Mycale vermistyla

description: Mycale (Carmia) vermistyla Li, 1986
Mycale vermistyla Li, 1986: 87 (Chinese text), 110 (English text), Fig. 10.
Summary description. Branched, firm body, surface irregular, color brown. Skeleton with isolated bundles of mycalostyles. Mycalostyles, alleged to be in two categories (straight and vermiform) 134–254 x 3–8 µm, anisochelae 14–16 µm, sigmas I 36–39 µm, sigmas II peculiarly curved, 14–17 µm.
Distribution. Yulin, south coast of Hainan, South China Sea, approx. 18.2°N 109.54°E. no depth data.
Comment. The ‘vermiform’ mycalostyles are probably just juvenile spicules (see above in the New Caledonian specimen of M. (C.) monomicrosclera sp.nov., which has similar vermiform spicules). The small sigmas are indicated as ‘much more curved’ and peculiar. We believe that the ramose growth form is the distinctive feature of the species.
description: Published as part of Van, Rob W. M., Aryasari, Ratih & De, Nicole J., 2021, Mycale species of the tropical Indo-West Pacific (Porifera, Demospongiae, Poecilosclerida), pp. 1-212 in Zootaxa 4912 (1) on page 86, DOI: 10.11646/zootaxa.4912.1.1, http://zenodo.org/record/4450930
Additional file 5: Figure S2. of Identification of two transcription factors activating the expression of OsXIP in rice defence response
Creators: name: Yihua Zhan
name: Xiangyu Sun
name: Guozeng Rong
name: Chunxiao Hou
name: Yingying Huang
name: Jiang, Dean
name: Xiaoyan Weng
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Subcellular localization of OsbHLH59 and OsERF71 in N. benthamiana. The full length ORFs without terminators of OsbHLH59 and OsERF71 were cloned into the pCAMBIA1300-sGFP vector under the control of the 35S promoter. Then N. benthamiana cells were transformed with 35Sp::OsbHLH59:GFP, 35Sp::OsERF71:GFP or pCAMBIA1300-GFP. After incubating for 48 h, the transformed cells were observed under a confocal microscope. The photographs were taken under detecting GFP fluorescence, bright field, and in combination (merge), respectively. Empty vector (pCAMBIA1300-GFP) was used as a control. Bars, 10 μm. (DOCX 1068 kb)
Additional file 4: Figure S1. of Identification of two transcription factors activating the expression of OsXIP in rice defence response
Creators: name: Yihua Zhan
name: Xiangyu Sun
name: Guozeng Rong
name: Chunxiao Hou
name: Yingying Huang
name: Jiang, Dean
name: Xiaoyan Weng
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Plant Biology
subject: Computational Biology

description: The sequence of the putative promoter region (â  2,070/+52) of OsXIP. The transcription start site is indicated as +1, and the putative start codon is underlined; All potential cis-acting elements are boxed; All the primers (forward OP1-U- OP7-U and reverse OP-L) are indicated by red arrows. (DOCX 793Â kb)
Additional file 5: Figure S2. of Identification of two transcription factors activating the expression of OsXIP in rice defence response
Creators: name: Yihua Zhan
name: Xiangyu Sun
name: Guozeng Rong
name: Chunxiao Hou
name: Yingying Huang
name: Jiang, Dean
name: Xiaoyan Weng
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Subcellular localization of OsbHLH59 and OsERF71 in N. benthamiana. The full length ORFs without terminators of OsbHLH59 and OsERF71 were cloned into the pCAMBIA1300-sGFP vector under the control of the 35S promoter. Then N. benthamiana cells were transformed with 35Sp::OsbHLH59:GFP, 35Sp::OsERF71:GFP or pCAMBIA1300-GFP. After incubating for 48 h, the transformed cells were observed under a confocal microscope. The photographs were taken under detecting GFP fluorescence, bright field, and in combination (merge), respectively. Empty vector (pCAMBIA1300-GFP) was used as a control. Bars, 10 μm. (DOCX 1068 kb)
Additional file 3: Table S3. of Identification of two transcription factors activating the expression of OsXIP in rice defence response
Creators: name: Yihua Zhan
name: Xiangyu Sun
name: Guozeng Rong
name: Chunxiao Hou
name: Yingying Huang
name: Jiang, Dean
name: Xiaoyan Weng
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology
subject: Computational Biology

description: Primers for chromatin immunoprecipitation (ChIP)-PCR. (DOCX 19Â kb)
Leptotrombidium (Leptotrombidium) youyi Zhang, Deng and Wang 1996
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Leptotrombidium
Leptotrombidium youyi

description: Leptotrombidium (Leptotrombidium) youyi Zhang, Deng and Wang, 1996:
PAL
Leptotrombidium youyi, Stekolnikov 2013 [fulleri group]
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 144, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
title: Development and Testing of an 8-Bit Digitally Throttled Hybrid Rocket Motor
Creators: name: Coombs, Trevor W.
Publisher: name: Utah State University
Year: 2024

description: Hybrid rocket motors that use a solid fuel grain and liquid oxidizer are low-cost and safer alternatives to traditional rocket motors. Another benefit of hybrid rocket motors is that during a burn, the amount of oxidizer into the combustion chamber can be changed, this capability is called throttling. To take advantage of the throttling ability of hybrid rocket motors, a throttling valve made up of 8 individually controlled valves is designed, developed, and tested, which is documented in this thesis. The results of the testing campaign show that the 8-bit digital throttling valve technology is an effective throttling technology and can help hybrid rocket motors become a more widely used propulsion alternative in a wide range of spaceflight applications.
Leptotrombidium (Leptotrombidium) yuebeiense Zhao 1982
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Leptotrombidium
Leptotrombidium yuebeiense

description: Leptotrombidium (Leptotrombidium) yuebeiense Zhao, 1982b:
PAL
Leptotrombidium yuebeiensis Zhao, 1982b
Leptotrombidium (Leptotrombidium) yuebeinse, Li et al. 1997
Leptotrombidium yuebeiense, Stekolnikov 2013 [5 group]
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 144, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Leptotrombidium (Leptotrombidium) yulini Xiang and Wen 1984
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Leptotrombidium
Leptotrombidium yulini

description: Leptotrombidium (Leptotrombidium) yulini Xiang and Wen, 1984d:
PAL
Leptotrombidium yulini, Stekolnikov 2013 [5 group]
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 144, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Bacillaria dongtingensis Bing Liu & D. M. Williams 2021, sp. nov.
Creators: name: Long, Ji-Yan
name: Williams, David M.
name: Liu, Bing
name: Zhou, Yang-Yan
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Chromista
Bacillariophyta
Bacillariophyceae
Bacillariales
Bacillariaceae
Bacillaria
Bacillaria dongtingensis

description: Bacillaria dongtingensis Bing Liu & D.M. Williams sp. nov. (Figs 30–58)
LM: Valves linear-lanceolate, tapering to cuneate or rostrate (Figs 30–40). Valve dimensions (n = 81): 53–99 μm long, 4.4–5.7 μm wide. Fibulae distinct, placed approximately along valve midline, unevenly spaced, 6–12 in 10 μm. Striae indistinct, parallel throughout valve, 24–26 in 10 μm. Fault sites on valve broader side difficult to discern using LM.
SEM: Colony and frustule view: Cell to cell attachment forms colony (Fig. 41). At least two open girdle bands (Figs 43–46, labeled B1 to B2). Poroids of valvocopula covered externally by hymenes (Figs 45, 46).
TABLE 1. Comparison among similar Bacillaria species.
Valve view: Valve linear-lanceolate (Figs 41, 43, 47, 53). Raphe nearly central, continuous from pole to pole, distal raphe endings T-shaped (Figs 45, 46, 49, 52); one raphe flange present on narrower side of valve, irregular or complete lacking, terminating before reaching poles (Figs 42–52, RF). Transapical ribs originated with raphe ribs, parallel; striae uniseriate, composed of rounded areolae covered by hymenes externally, continuing onto mantle. Marginal spines distinct (e.g., Figs 44–46, 48, 49). On broader side of valve, transapical rib forms two branches at some sites (Figs 42, 50, 51, 52, 55, 57, arrow, respectively; 58, two arrows), sometimes two transapical ribs merge into one (Figs 42, 48, 50, 54, 55, three curved arrows, respectively). Fibulae rib-like, arching into cell (Figs 53–58). Two fibular ribs asymmetrical, i.e. fibular rib on broader side of valve more developed than that on narrower side (Figs 54, 56, FR). Internally, raphe straight, continuing from pole to pole where its distal raphe fissure curves into raised helictoglossa (Figs 55, 56).
Type:— CHINA. Hunan province: West Dongting Lake, Yang’s Village, a sampling point near the lakeshore, 28°52’29.5” N, 112°16’52” E, 50 m asl., Bing Liu, 23 rd April 2017 (holotype BM! 81955, specimen circled on slide, illustrated as = Fig. 30; isotype JIU! G202102, specimen circled on slide, illustrated as Fig. 32).
Etymology:—Named after Dongting Lake, where the species was found.
Ecology:— Bacillaria dongtingensis was commonly found in the surface sediment collected in West Dongting Lake with B. sinensis. For details see above.
description: Published as part of Long, Ji-Yan, Williams, David M., Liu, Bing & Zhou, Yang-Yan, 2021, Two new freshwater species of Bacillaria (Bacillariophyta) from Dongting Lake, China, pp. 243-256 in Phytotaxa 513 (3) on pages 249-254, DOI: 10.11646/phytotaxa.513.3.4, http://zenodo.org/record/5310508
MOESM2 of Systematic and functional identification of small non-coding RNAs associated with exogenous biofuel stress in cyanobacterium Synechocystis sp. PCC 6803
Creators: name: Guangsheng Pei
name: Sun, Tao
name: Chen, Shuo
name: Chen, Lei
name: Weiwen Zhang
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2: Figure S1. Genome-wide visualization of all sRNA mapping data in the chromosome genome of Synechocystis sp. PCC 6803. The figure can be divided into two regions, and the upper region can be further divided into three parts corresponding to samples collected at 24, 48 and 72 h. Each part provides detailed visualization of sRNA mapping depth for each nucleotide. Each sample is distinguished using a different color. The lower part can be further divided into ten parts, and each part shows detailed sRNA and gene information. From up to down: (1) all identified sRNAs in this study, (2, 3) all identified sRNAs in the positive and negative chains of Study A—Mitschkea et al. [9], (4, 5) All identified sRNAs in the positive and negative chains of Study B—Kopf et al. [10], (6, 7) all identified sRNAs in the positive and negative chains of Study C—Xu et al. [11], (8) Gene name and annotation in the NCBI database of Synechocystis PCC 6803, (9) Open reading frame prediction of Synechocystis sp. PCC 6803, (10) Characteristic sequences identified in Synechocystis sp. PCC 6803 genome, including genome repeat regions, insert sequences, ribosomal binding sites and Rho-independent transcription terminators.
MOESM2 of Systematic and functional identification of small non-coding RNAs associated with exogenous biofuel stress in cyanobacterium Synechocystis sp. PCC 6803
Creators: name: Guangsheng Pei
name: Sun, Tao
name: Chen, Shuo
name: Chen, Lei
name: Weiwen Zhang
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2: Figure S1. Genome-wide visualization of all sRNA mapping data in the chromosome genome of Synechocystis sp. PCC 6803. The figure can be divided into two regions, and the upper region can be further divided into three parts corresponding to samples collected at 24, 48 and 72 h. Each part provides detailed visualization of sRNA mapping depth for each nucleotide. Each sample is distinguished using a different color. The lower part can be further divided into ten parts, and each part shows detailed sRNA and gene information. From up to down: (1) all identified sRNAs in this study, (2, 3) all identified sRNAs in the positive and negative chains of Study A—Mitschkea et al. [9], (4, 5) All identified sRNAs in the positive and negative chains of Study B—Kopf et al. [10], (6, 7) all identified sRNAs in the positive and negative chains of Study C—Xu et al. [11], (8) Gene name and annotation in the NCBI database of Synechocystis PCC 6803, (9) Open reading frame prediction of Synechocystis sp. PCC 6803, (10) Characteristic sequences identified in Synechocystis sp. PCC 6803 genome, including genome repeat regions, insert sequences, ribosomal binding sites and Rho-independent transcription terminators.