cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Visualizing W\workflow runs in Galaxy: The graph view for workflow invocations
Creators: name: Awan, Ahmed
Publisher: name: F1000 Research Limited
Year: 2024

description: Workflows are one of the core features of Galaxy, and the user-friendly, canvas based workflow editor makes chaining tools into pipelines a very visually intuitive experience for users. Unfortunately, the same cannot be said about the user experience of investigating currently running or previously run workflows, as Galaxy doesn’t provide a similar visual interface for invocations. In this talk, we will highlight one of Galaxy’s latest features, the Workflow Invocation Graph View which helps solve the problem of visualizing workflow runs and is a step forward in Galaxy’s broader efforts of improving context for points of failure in its users’ data analyses.



Previously, the summarized information available to users for each of their workflow runs was found in a table in the invocations list. Each invocation had a brief summary with a few progress bars indicating the number of steps run and additional information available in tabbed views. This information was not entirely intuitive to the users due to the amount of clicks required to identify the exact job(s) that might have failed at a particular step in the workflow. The invocation graph view is now an addition to the invocation summary in the same list, as well as on a dedicated route for each invocation. This view leverages the same interface and structure of the user’s workflow as it appears in the workflow editor. Instead of the step information on each node in the graph, it shows the states and number of jobs associated with each step, allowing users to click on a step and review the associated jobs side by side.



As this invocation graph view mirrors the original workflow’s structure, it becomes significantly easier for users to follow the pipeline and identify exactly where Galaxy might have errored or a user-generated mistake might have been made. This feature is a milestone in Galaxy’s development roadmap for providing visual context for “why something went wrong” with a user’s data analysis on the platform. This feature, the foundation for which was laid by the improvements made to Galaxy’s workflow editor interface, will consequently serve as a basis for future implementations of graphical representations of other items in Galaxy such as histories and datasets. Such improvements will help make Galaxy’s user interface more self explanatory and we look forward to sharing them with the community.
sj-pdf-1-aut-10.1177_13623613221133176 – Supplemental material for Digital tools for direct assessment of autism risk during early childhood: A systematic review
Creators: name: Mukherjee, Debarati
name: Bhavnani, Supriya
name: Lockwood Estrin, Georgia
name: Rao, Vaisnavi
name: Dasgupta, Jayashree
name: Irfan, Hiba
name: Chakrabarti, Bhismadev
name: Patel, Vikram
name: Belmonte, Matthew K
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: FOS: Clinical medicine
subject: 111799 Public Health and Health Services not elsewhere classified
subject: FOS: Health sciences
subject: Education
subject: 130312 Special Education and Disability
subject: FOS: Educational sciences

description: Supplemental material, sj-pdf-1-aut-10.1177_13623613221133176 for Digital tools for direct assessment of autism risk during early childhood: A systematic review by Debarati Mukherjee, Supriya Bhavnani, Georgia Lockwood Estrin, Vaisnavi Rao, Jayashree Dasgupta, Hiba Irfan, Bhismadev Chakrabarti, Vikram Patel and Matthew K Belmonte in Autism
Conservation Genetic Analysis of Spotted Turtles (Clemmys guttata) Across the Western Portion of Their Range
Creators: name: Mallinger, Elyse Christine
Publisher: name: Purdue University Graduate School
Year: 2024
Subjects: classificationCode: 310509
subject: Genomics
classificationCode: 310307
subject: Population ecology

description: Spotted Turtle (Clemmys guttata) populations are declining dramatically across their range primarily due to habitat alteration, fragmentation, and reduction. Fragmented habitats have the potential to affect a population’s genetic diversity and size through the direct loss of individuals and the reduction of gene flow. Understanding genetic variation in Spotted Turtles can provide insight into population dynamics, the geographic distribution of genetic variants, and conservation needs. I examined the genetic variation in Spotted Turtle populations across the western portion of their geographic range including localities in Illinois, Indiana, Ohio, Michigan, and Ontario, Canada. Using blood samples collected during the 2022 and 2023 field seasons as well as previously collected tissues, I genotyped 611 individuals across 17 or more localities using 16 microsatellite loci. Five of 17 sites across the geographic extent of the sample suggested the presence of inbreeding (positive Fis values). Although the precision of estimates was low in most localities (10 of 17 with incalculable confidence intervals), the remaining localities in Ohio were estimated to have effective population sizes of < 20 individuals. Model-based and ordination-based clustering were conducted to assess population structure. Both types of clustering approaches identified four genetic clusters within the dataset. The two Illinois sites fell distinctly into their own cluster, whereas all other sites show a pattern of admixture. Despite these clustering results, incorporation of spatial information in principal component analysis (sPCA), shows that genetic composition gradually changes from west to east across the landscape, a pattern supported by isolation by distance using a Mantel test of the correlation between genetic and geographic distances. My results show that several Spotted Turtle populations have low levels of genetic variation and could benefit from augmentation. The observed pattern of isolation by distance 9 suggests that any translocations of turtles to support populations should be attempt to draw from viable populations that are in closer proximity.
Additional file 10 of Lacto-ovo-vegetarian diet is inversely associated with the osteosarcopenia in older adults
Creators: name: Huang, Runnian
name: Hu, Junwei
name: Li, Yi
name: Yang, Sijia
name: Li, Xin
name: Hou, Tianbo
name: Ning, Zibo
name: Ma, Chunhua
name: Yuan, Xiaoyue
name: Wang, Zheng
name: Zhang, Tiantian
name: Wang, Difei
Publisher: name: figshare
Year: 2024
Subjects: subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Science Policy
subject: Plant Biology

description: Supplementary Material 10
Supplemental material for this article available online.
Creators: name: Kaufman, Keith L.
name: Lee, David S.
name: Milroy, Jeffrey J.
name: Raj, Anita
name: Diamond, Brie
name: Bowen, Kendra
name: Burns, Ronald
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 160299 Criminology not elsewhere classified
subject: FOS: Law

description: Supplemental Material for Factors Affecting Sexual Assault Case Processing: Charging Through Sentencing in a Large Southern County by Brie Diamond, Kendra Bowen, Ronald Burns, in Journal of Interpersonal Violence
Additional file 11 of Lacto-ovo-vegetarian diet is inversely associated with the osteosarcopenia in older adults
Creators: name: Huang, Runnian
name: Hu, Junwei
name: Li, Yi
name: Yang, Sijia
name: Li, Xin
name: Hou, Tianbo
name: Ning, Zibo
name: Ma, Chunhua
name: Yuan, Xiaoyue
name: Wang, Zheng
name: Zhang, Tiantian
name: Wang, Difei
Publisher: name: figshare
Year: 2024
Subjects: subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Science Policy
subject: Plant Biology

description: Supplementary Material 11
sj-pdf-1-tct-10.1177_15330338231219352 - Supplemental material for Prediction Model of Ocular Metastases in Gastric Adenocarcinoma: Machine Learning-Based Development and Interpretation Study
Creators: name: Zou, Jie
name: Shen, Yan-Kun
name: Wu, Shi-Nan
name: Wei, Hong
name: Li, Qing-Jian
name: Xu, San Hua
name: Ling, Qian
name: Kang, Min
name: Liu, Zhao-Lin
name: Huang, Hui
name: Chen, Xu
name: Wang, Yi-Xin
name: Liao, Xu-Lin
name: Tan, Gang
name: Shao, Yi
Publisher: name: SAGE Journals
Year: 2024
Subjects: Oncology and Carcinogenesis not elsewhere classified
Radiology and Organ Imaging
Biochemistry

description: Supplemental material, sj-pdf-1-tct-10.1177_15330338231219352 for Prediction Model of Ocular Metastases in Gastric Adenocarcinoma: Machine Learning-Based Development and Interpretation Study by Jie Zou, Yan-Kun Shen, Shi-Nan Wu, Hong Wei, Qing-Jian Li, San Hua Xu, Qian Ling, Min Kang, Zhao-Lin Liu, Hui Huang, Xu Chen, Yi-Xin Wang, Xu-Lin Liao, Gang Tan and Yi Shao in Technology in Cancer Research & Treatment
title: Rapport de voyage, Normandie (1932) : Ligne de New York, Croisière à Rio, 1939
Creators: name: Bohec, Joseph
name: Cailloce, Joseph
name: Thoreux, Pierre
name: Villar, Henry
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2025
Subjects: subject: Compagnie Générale Transatlantique
subject: Transports maritimes - Histoire
subject: Marine marchande
subject: Journaux de bord

description: Chapitrage : Rapport général / du capitaine - Rapport du second - Rapport du commissaire - Rapport contentieux - Rapport d'escales - Rapport du médecin - Rapports d'inspecteurs
description: Source: French Lines & Compagnies, 1997 004 6285-02
description: Coverage: 1939-02-04/1939-02-28
Additional file 12 of Lacto-ovo-vegetarian diet is inversely associated with the osteosarcopenia in older adults
Creators: name: Huang, Runnian
name: Hu, Junwei
name: Li, Yi
name: Yang, Sijia
name: Li, Xin
name: Hou, Tianbo
name: Ning, Zibo
name: Ma, Chunhua
name: Yuan, Xiaoyue
name: Wang, Zheng
name: Zhang, Tiantian
name: Wang, Difei
Publisher: name: figshare
Year: 2024
Subjects: subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Science Policy
subject: Plant Biology

description: Supplementary Material 12
Mitotic spindle positioning protein serves as prognostic biomarker in patients with colorectal cancer
Creators: name: Li, Jin
name: Zhang, Aimin
name: Li, Weilun
name: Duan, Zeye
name: Li, Suqin
name: Fan, Yunyan
name: Hao, Haiyan
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Colorectal cancer (CRC) ranks among the most aggressive types of cancer globally. Currently, clinical tumor prognostic biomarkers still lack accuracy. Mitotic spindle positioning (MISP) protein connects microtubules to the actin cytoskeleton and adhesive plaques, playing a critical role in spindle positioning, orientation, and the process of cell division. MISP can regulate the malignant biological functions of pancreatic cancer and intrahepatic cholangiocarcinoma and it acts as biomarker for prognosis, but its role in CRC remains unclear. This study has collected 37 CRC tissue samples and 37 corresponding adjacent nontumor tissue samples, and 57 additional CRC tissues samples. Clinical data were obtained from the patients with CRC. MISP mRNA and protein expression levels were analyzed in normal control and CRC tissues using the GEPIA and Human Protein Atlas website. MISP protein levels in the collected tissues were analyzed using immunohistochemistry. MISP mRNA and protein expression levels were significantly increased in CRC tissues compared to adjacent nontumor tissues. Higher MISP protein levels were associated with distant metastasis, recurrence, and lower survival rates. Kaplan–Meier analysis showed that high expression levels of MISP protein were associated with recurrence and death in CRC patients. In addition, a high expression level of MISP protein, lymph node metastasis, and distance metastasis were risk factors for recurrence and a poor prognosis in patients with CRC. Elevated MISP protein correlated with tumor metastasis, recurrence, and lower survival rates in patients with CRC, and thus, MISP has the potential to become a prognostic marker for CRC.
sj-pdf-1-mcr-10.1177_10775587231223292 – Supplemental material for Interventions and Hospital Characteristics Associated With Patient Experience: An Update of the Evidence
Creators: name: Beckett, Megan K.
name: Quigley, Denise D.
name: Lehrman, William G.
name: Giordano, Laura A.
name: Cohea, Christopher W.
name: Goldstein, Elizabeth H.
name: Elliott, Marc N.
Publisher: name: SAGE Journals
Year: 2024
Subjects: Public Health and Health Services not elsewhere classified
Sociological Methodology and Research Methods

description: Supplemental material, sj-pdf-1-mcr-10.1177_10775587231223292 for Interventions and Hospital Characteristics Associated With Patient Experience: An Update of the Evidence by Megan K. Beckett, Denise D. Quigley, William G. Lehrman, Laura A. Giordano, Christopher W. Cohea, Elizabeth H. Goldstein and Marc N. Elliott in Medical Care Research and Review
Additional file 13 of Lacto-ovo-vegetarian diet is inversely associated with the osteosarcopenia in older adults
Creators: name: Huang, Runnian
name: Hu, Junwei
name: Li, Yi
name: Yang, Sijia
name: Li, Xin
name: Hou, Tianbo
name: Ning, Zibo
name: Ma, Chunhua
name: Yuan, Xiaoyue
name: Wang, Zheng
name: Zhang, Tiantian
name: Wang, Difei
Publisher: name: figshare
Year: 2024
Subjects: subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Science Policy
subject: Plant Biology

description: Supplementary Material 13
sj-docx-1-cre-10.1177_02692155241227049 - Supplemental material for A scoping review of the use of creative activities in stroke rehabilitation
Creators: name: Liu, Shuang
name: Huang, XianYi
name: Liu, Yan
name: Yue, Jie
name: Li, Yu
name: Chen, Li
Publisher: name: SAGE Journals
Year: 2024
Subjects: subject: Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: Orthopaedics
subject: Sports Medicine

description: Supplemental material, sj-docx-1-cre-10.1177_02692155241227049 for A scoping review of the use
of creative activities in stroke rehabilitation by Shuang Liu, XianYi Huang, Yan Liu, Jie Yue, Yu Li and Li Chen in Clinical Rehabilitation
sj-docx-1-cpc-10.1177_10556656231224198 - Supplemental material for Maternal Exposure to Stress During Covid-19 and Non-Syndromic Orofacial Clefts: A Cohort Retrospective Study
Creators: name: Sabbagh, Heba Jafar
name: AlSharif, Mona Talal
name: Abdulhameed, Fatma Dawood
name: Aljohar, Aziza Johar
name: Alhussain, Reema Mahdi
name: Alghamdi, Sultan Musaad
name: Alrejaye, Najla Sulaiman
name: AlGudaibi, Latifa Yousef
name: Sallout, Bahaudbdin Ibraheem
name: Albaqawi, Badi Shoaib
name: Alnamnakani, Eman Abdulbaset
name: Brekeit, Lougin Khalid
name: Basri, Osama Adel
name: Almalik, Manal Ibrahim
name: Al Soqih, Norah Suliman
name: Alshaikh, Ali Bakr
name: Aburiziza, Abdullah Jameel
name: Al Qahtani, Faisal Ali
name: Alghamdi, Bushra Musaad
name: Alraddadi, Asalah Khalid
name: Khaja, Hadeel Hamza
name: Alamoudi, Rana Abdullah
Publisher: name: SAGE Journals
Year: 2024
Subjects: Surgery

description: Supplemental material, sj-docx-1-cpc-10.1177_10556656231224198 for Maternal Exposure to Stress During Covid-19 and Non-Syndromic Orofacial Clefts: A Cohort Retrospective Study by Heba Jafar Sabbagh, Mona Talal AlSharif, Fatma Dawood Abdulhameed, Aziza Johar Aljohar, Reema Mahdi Alhussain, Sultan Musaad Alghamdi, Najla Sulaiman Alrejaye, Latifa Yousef AlGudaibi, Bahaudbdin Ibraheem Sallout, Badi Shoaib Albaqawi, Eman Abdulbaset Alnamnakani, Lougin Khalid Brekeit, Osama Adel Basri, Manal Ibrahim Almalik, Norah Suliman Al Soqih, Ali Bakr Alshaikh, Abdullah Jameel Aburiziza, Faisal Ali Al Qahtani, Bushra Musaad Alghamdi, Asalah Khalid Alraddadi, Hadeel Hamza Khaja and Rana Abdullah Alamoudi in The Cleft Palate Craniofacial Journal
Additional file 1 of Evaluation of peripheral and autonomic nervous systems dysfunctions in patients with Parkinson’s disease
Creators: name: Ragab, Osama A.
name: Mohamed, Ehab S.
name: Nassar, Mahmoud H.
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Mental Health
subject: Computational Biology

description: Additional file 1. The document describes the electrophysiological assessment of cardiovascular autonomic nervous system function. The assessment includes the following tests: Heart rate variability (HRV) tests, Valsalva ratio and HRV with active standing. Adrenergic (sympathetic innervation) tests: Systolic blood pressure response to standing and diastolic blood pressure response to sustained handgrip. Sympathetic skin response test. Finally, Ewing classification of autonomic failure. There is a reference for each test.
sj-docx-1-jop-10.1177_02698811231215420 – Supplemental material for Older adults in psychedelic-assisted therapy trials: A systematic review
Creators: name: Bouchet, Lisa
name: Sager, Zachary
name: Yrondi, Antoine
name: Nigam, Kabir B
name: Anderson, Brian T
name: Ross, Stephen
name: Petridis, Petros D
name: Beaussant, Yvan
Publisher: name: SAGE Journals
Year: 2024
Subjects: subject: Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: Psychology not elsewhere classified
subject: Psychiatry (incl. Psychotherapy)

description: Supplemental material, sj-docx-1-jop-10.1177_02698811231215420 for Older adults in psychedelic-assisted therapy trials: A systematic review by Lisa Bouchet, Zachary Sager, Antoine Yrondi, Kabir B Nigam, Brian T Anderson, Stephen Ross, Petros D Petridis and Yvan Beaussant in Journal of Psychopharmacology
sj-docx-2-cpc-10.1177_10556656241227032 - Supplemental material for Hospital Variation and Resource Use for Infants with Craniosynostosis Undergoing Open, Endoscopic, and Distraction Osteogenesis Surgical Techniques
Creators: name: Kanack, Melissa D.
name: Proctor, Mark R.
name: Meara, John G.
name: Balkin, Daniel M.
name: Rodean, Jonathan
name: Stringfellow, Isabel C.
name: Berry, Jay G.
Publisher: name: SAGE Journals
Year: 2024
Subjects: Surgery

description: Supplemental material, sj-docx-2-cpc-10.1177_10556656241227032 for Hospital Variation and Resource Use for Infants with Craniosynostosis Undergoing Open, Endoscopic, and Distraction Osteogenesis Surgical Techniques by Melissa D. Kanack, Mark R. Proctor, John G. Meara, Daniel M. Balkin, Jonathan Rodean, Isabel C. Stringfellow and Jay G. Berry in The Cleft Palate Craniofacial Journal
Additional file 2 of Evaluation of peripheral and autonomic nervous systems dysfunctions in patients with Parkinson’s disease
Creators: name: Ragab, Osama A.
name: Mohamed, Ehab S.
name: Nassar, Mahmoud H.
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Mental Health
subject: Computational Biology

description: Additional file 2. This table describes the results of correlation between serum Levels of vitamin B12, homocysteine, methylmalonic acid, calculated equivalent L-dopa dose per day with PD duration, MDS-UPDRS and Toronto clinical neuropathy score. There is a significant correlation between serum levels of vitamin B12, homocysteine, methylmalonic acid, and the calculated equivalent L-dopa dose per day with the duration, severity of PD, and frequency of neuropathy. The Ewing score, which classifies the severity of autonomic dysfunction, has a positive significant correlation with MDS-UPDRS, PD duration, and calculated equivalent L-dopa dose per day.
Combining multiple cell-line imaging datasets for protein-ligand activity prediction
Creators: name: Simm, Jaak
name: Arany, Adam
name: Wegner, Jörk K.
name: Gustin, Emmanuel
name: Ceulemans, Hugo
name: Moreau, Yves
Publisher: name: F1000 Research Limited
Year: 2018

description: Using images from multiple cell lines increases the number of protein targets that can be predictable with good accuracy. Fusion of imaging data from two cell lines improves over the separately trained models. These results were based on proprietary image data we see a need for creation of large public ligand databases with image annotations from various cell-lines.
sj-docx-2-cpc-10.1177_10556656241227355 - Supplemental material for What Parents of Children Born with a Cleft Lip and/or Palate Want to Know About the Care for their Child
Creators: name: Heijsters, F.A.C.J.
name: van Eick, M.D.
name: van Nassau, F.
name: Bouman, M.
name: Breugem, Corstiaan C.
name: de Bruijne, M.C.
name: Mullender, M.G.
name: Don Griot, J.P.W.
Publisher: name: SAGE Journals
Year: 2024
Subjects: Surgery

description: Supplemental material, sj-docx-2-cpc-10.1177_10556656241227355 for What Parents of Children Born with a
Cleft Lip and/or Palate Want to Know
About the Care for their Child by F.A.C.J. Heijsters, M.D. van Eick, F. van Nassau, M. Bouman, Corstiaan C. Breugem, M.C. de Bruijne, M.G. Mullender and J.P.W. Don Griot in The Cleft Palate Craniofacial Journal
sj-docx-1-wmr-10.1177_0734242X231221083 – Supplemental material for Four-decades evolutionary development of municipal solid waste management in China: Implications for sustainable waste management and circular economy
Creators: name: Yu, Tianxu
name: Liao, Chenglin
name: Stanisavljevic, Nemanja
name: Li, Lei
name: Peng, Xuya
name: Gao, Xiaofeng
name: Yue, Dongbei
name: Wang, Xiaoming
Publisher: name: SAGE Journals
Year: 2024
Subjects: Public Health and Health Services not elsewhere classified
Engineering not elsewhere classified

description: Supplemental material, sj-docx-1-wmr-10.1177_0734242X231221083 for Four-decades evolutionary development of municipal solid waste management in China: Implications for sustainable waste management and circular economy by Tianxu Yu, Chenglin Liao, Nemanja Stanisavljevic, Lei Li, Xuya Peng, Xiaofeng Gao, Dongbei Yue and Xiaoming Wang in Waste Management & Research
Additional file 1 of Mitotic gene regulation by the N-MYC-WDR5-PDPK1 nexus
Creators: name: Streeter, Sarah A.
name: Williams, Alexandria G.
name: Evans, James R.
name: Wang, Jing
name: Guarnaccia, Alissa D.
name: Florian, Andrea C.
name: Al-Tobasei, Rafet
name: Liu, Qi
name: Tansey, William P.
name: Weissmiller, April M.
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Supplementary Material 1
sj-docx-1-ejo-10.1177_11206721241226990 - Supplemental material for Former smoking as a risk factor for visual field progression in exfoliation glaucoma patients in Sweden
Creators: name: Ayala, Marcelo
Publisher: name: SAGE Journals
Year: 2024
Subjects: Medicine

description: Supplemental material, sj-docx-1-ejo-10.1177_11206721241226990 for Former smoking as a risk factor for visual field progression in exfoliation glaucoma patients in Sweden by Marcelo Ayala in European Journal of Ophthalmology
Components of a successful postdoc
Creators: name: Bankston, Adriana
Publisher: name: F1000 Research Limited
Year: 2018

description: Postdoctoral researchers are critical to the future of science. Fair pay, opportunities for meaningful leadership positions, and access to positive mentoring are critical factors of a successful postdoc experience. These factors are also likely to influence the decisions of postdocs on which institutions they will choose for conducting independent research, as well as whether to remain in academe or pursue other career paths. Fair pay is critical for postdocs, who are often viewed as “cheap labor” in the system, and are undervalued and undertrained for being successful in society. To date, we have tracked how institutions responded to a federal mandate to raise postdoc salaries nationally, which influenced institutional decisions and changed the conversation on this topic in academe. In addition to advocating for fair pay, we aim to place Early Career Researchers (ECRs) into meaningful leadership positions within scientific societies - and ultimately expand to other entities - in order to help these organizations develop forward-looking policies and practices to keep up with changes in the system, and to serve the interests of their ECR membership. Finally, we want to ensure that ECRs - most of whom are trained using taxpayer money - are receiving adequate training and mentoring in academe, enabling them to provide a good return on society’s investment through a variety of careers. Ultimately, we envision a research enterprise that maximizes the human component of science, and seek to bring about such a system through our efforts as an independent non-profit organization.

This talk was given during Postdoctoral Appreciation Week at the University of Southern California on September 17, 2018.
Additional file 4 of Mitotic gene regulation by the N-MYC-WDR5-PDPK1 nexus
Creators: name: Streeter, Sarah A.
name: Williams, Alexandria G.
name: Evans, James R.
name: Wang, Jing
name: Guarnaccia, Alissa D.
name: Florian, Andrea C.
name: Al-Tobasei, Rafet
name: Liu, Qi
name: Tansey, William P.
name: Weissmiller, April M.
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Supplementary Material 4
NEMIS VA LOTIN TILLARI TIBBIY TERMINLARINI QIYOSIY TAHLIL ASOSIDA O'QITISH
Creators: name: Muxammedova, F.R.
name: Xudayqulov, Sh.X.
Publisher: name: Zenodo
Year: 2025

description: Hozirgi kunda O’zbekistonda tibbiy sohaga katta e’tibor qaratilayotgani chet ellik talabalarni ham yurtimizda tahsil olishlari uchun jalb etmoqda va bu tibbiyotga yo’naltirilgan oliy ta’lim muassasalarida xorijlik talabalar sonining oshishiga sabab bo’lmoqda. Shu bilan birga  bu sohada xalqaro aloqalar va axborot almashishining kengayishi natijasida tibbiy terminologiya global miqyosda bir xil va o‘zaro tushunarli bo‘lishi muhim ahamiyat kasb etmoqda.
Morphing Di Una Testa Marmorea Che Ritrae Giulio Cesare
Creators: name: Sparavigna, Amelia Carolina
Publisher: name: Zenodo
Year: 2018
Subjects: Morphing
Image processing
Portraitures of Julius Caesar
Giulio Cesare

description: In questo articolo si mostra il morphing della testa marmorea di Giulio Cesare  ora esposta alla Centrale Montemartini a Roma. Per il morphing si usano i ritratti di Cesare del Camposanto di Pisa, il cosiddetto Chiaramonti, ed il ritratto proveniente da Tuscolo. Il risultato migliore che si ottiene sembra essere quello col Chiaramonti.
OPTIMIZING COMBINATIONAL DEVICES THROUGH PHOTONIC CRYSTAL ARCHITECTURES: A COMPREHENSIVE LITERATURE REVIEW
Creators: name: T. THAMIZH MANI
name: Dr. R.J. KAVITHA
Publisher: name: Zenodo
Year: 2024
Subjects: Combinational Devices, Functional Parameters, Photonic Crystal (PhC), Structural Parameters.

description: Abstract

Photonic crystals represent a viable option for the creation of small and high-speed optical devices because of their special ability to manipulate light. The progress in photonic crystal-based comparators, encoders, and logic gates is examined in this review of the literature. The review addresses the structural parameters, functional parameters, approaches, and applications related to combinational device (comparators, encoders, and logic gates) based on photonic crystals. For improving the functionality of the device, various techniques were reviewed. By compiling research studies and experimental demonstrations to summarize the state-of-the-art at this time, the review offers valuable insights into the advancements and potential of photonic crystals for optical device development.
Additional file 1 of ESCO2’s oncogenic role in human tumors: a pan-cancer analysis and experimental validation
Creators: name: Huang, Yue
name: Chen, Dapeng
name: Bai, Yi
name: Zhang, Yamin
name: Zheng, Zhiwen
name: Fu, Qingfeng
name: Yi, Bocun
name: Jiang, Yuchen
name: Zhang, Zhihong
name: Zhu, Jianqiang
Publisher: name: figshare
Year: 2024
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Cancer

description: Supplementary Material 1
Additional file 2 of ESCO2’s oncogenic role in human tumors: a pan-cancer analysis and experimental validation
Creators: name: Huang, Yue
name: Chen, Dapeng
name: Bai, Yi
name: Zhang, Yamin
name: Zheng, Zhiwen
name: Fu, Qingfeng
name: Yi, Bocun
name: Jiang, Yuchen
name: Zhang, Zhihong
name: Zhu, Jianqiang
Publisher: name: figshare
Year: 2024
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Cancer

description: Supplementary Material 2
Subject Indexing In A Digital Age
Creators: name: Schürmann, Hans
Publisher: name: Zenodo
Year: 2018
Subjects: subject: subject indexing
subject: gnd:4120490-6

description: The rise of digital world implies the global networking of vast amounts of data. As soon as you have internet, you have access to this digital knowledge. Libraries as knowledge brokers also offer their resources in the digital network. As a provider among many, libraries must be measured in particular against Google in providing access to digital knowledge. Can library content be found in Google? Is content search via library portals better than in Google? What benefits does subject indexing bring for searching in this area? How can we extend subject indexing to digital resources? These questions cannot be answered conclusively. It is therefore all the more important to discuss them.

Die digitale Welt impliziert die globale Vernetzung immenser Datenmengen über das Internet. Wer über einen Internetzugang verfügt, hat zu diesem digitalen Wissen Zugang. Auch Bibliotheken sind als Wissensvermittler mit ihren digitalen Ressourcen in diesem Netzwerk präsent. Als ein Anbieter unter anderen müssen sich Bibliotheken insbesondere mit Google hinsichtlich des Zugangs zu digitalem Wissen messen lassen. Lässt sich in Google inhaltlich suchen? Ist die Suche in Bibliotheksportalen besser? Was bringt die Inhaltserschliessung für die Suche in diesem Bereich? Lässt sie sich auf die digitale Welt ausdehnen? Diese Fragen lassen sich nicht abschliessend beantworten. Umso wichtiger ist es, sie zu diskutieren.
title: „Sekond Hend“ – Mythen und Geschichten über die Krim
Creators: name: Hofmann, Tatjana
Publisher: name: Fachinformationsdienst Slavistik
Year: 2008
Subjects: subject: Krim
subject: Literatur
subject: Dissertation
subject: Habilitationsschrift
subject: 491.8

description: Das Land der Goten, Zufluchtsort der Griechen, Erinnerungsort an mehrere Kriege und überhaupt das Allunionssanatorium der Sowjetunion befinden sich allesamt auf der Krim – wenn man Texten über sie glauben darf. Nicht nur literarische Werke füllen diesen Raum in der heutigen Ukraine kreativ aus, sondern auch wissenschaftliche.
description: novinkigegengelesen
Additional file 3 of ESCO2’s oncogenic role in human tumors: a pan-cancer analysis and experimental validation
Creators: name: Huang, Yue
name: Chen, Dapeng
name: Bai, Yi
name: Zhang, Yamin
name: Zheng, Zhiwen
name: Fu, Qingfeng
name: Yi, Bocun
name: Jiang, Yuchen
name: Zhang, Zhihong
name: Zhu, Jianqiang
Publisher: name: figshare
Year: 2024
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Cancer

description: Supplementary Material 3
O'ZBEKISTONDA TA'LIM SOHASIGA OLIB BORILAYOTGAN ISLOHOTLAR VA UNING ISTIQBOLLARI. FAN VA TA'LIMNING INTEGRATSION JARAYONLARI. (CHIZMACHILIK MISOLIDA)
Creators: name: Jovliyeva, Orasta
Publisher: name: Zenodo
Year: 2025

description: Ushbu maqolada Oʻzbekistonda ta’lim sohasida amalga oshirilayotgan izchil islohotlar, ularning mazmun-mohiyati va istiqbollari tahlil etiladi. Xususan, so'nggi yillarda rivojlanayotgan ta’lim tizimida fanlararo integratsiya jarayonining ahamiyati ochib beriladi. Chizmachilik fanini boshqa fanlar bilan integrativ yondashuv asosida oʻqitishning samaradorligi va integrativ yondashuvning oʻquvchilarning ijodiy fikrlashi, texnik bilim va koʻnikmalarini shakllantirishdagi oʻrni haqida yoritilgan. Maqolada integratsion oʻqitish metodlarining nazariy va amaliy jihatlari, ularning oʻquv jarayoniga tatbiq etilishi boʻyicha ilgʻor tajribalar hamda kelajakdagi rivojlanish istiqbollari yoritiladi. Olingan natijalar fan va ta’lim integratsiyasi orqali ta’lim sifatini oshirishga qaratilgan amaliy tavsiyalar bilan boyitiladi.
sj-docx-1-npx-10.1177_1934578X221133582 - Supplemental material for In Vitro and in Vivo Evaluation of the Antimalarial Activities of Kniphofia reflexa Hutchinson ex Codd
Creators: name: Sema, Denis Kehdinga
name: Lannang, Alain Meli
name: Zofou, Denis
name: ur-Rehman, Mujeeb-
name: Fung, Tegha Hycienth
name: Tsague Tankeu, Virginie Flaure
name: Wansi, Jean Duplex
name: Sewald, Norbert
name: Choudhary, M. Iqbal
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: FOS: Clinical medicine

description: Supplemental material, sj-docx-1-npx-10.1177_1934578X221133582 for In Vitro and in Vivo Evaluation of the Antimalarial Activities of Kniphofia reflexa Hutchinson ex Codd by Denis Kehdinga Sema, Alain Meli Lannang, Denis Zofou, Mujeeb- ur-Rehman, Tegha Hycienth Fung and Virginie Flaure Tsague Tankeu, Jean Duplex Wansi, Norbert Sewald, M. Iqbal Choudhary in Natural Product Communications
S14: Modelling Data Quality In Archaeological Linked Open Data
Creators: name: Bruhn, Kai-Christian
name: Mees, Allard
name: Thiery, Florian
Publisher: name: Zenodo
Year: 2018

description: Today, increasing quantities of data are published by archaeological institutions. At the same time, interconnecting these data following the concept of “Linked Data” is becoming more and more popular. The current evolution from “Linked Data” via “Linked Open Data” (LOD) towards “Linked Open Usable Data” enables a wide array of archaeological applications. However, this development of an increasing LO(U)D-cloud implies challenges in handling complex facets of data quality. Therefore, modelling the handling of data quality becomes an increasingly important issue. This is especially valid for archaeological data, which are based on a complicated network of concepts from different knowledge domains. Even very carefully compiled datasets can contain errors and ambiguities. Unrecognised errors multiply exponentially in scenarios of data reuse: not only incorrect data and conclusions are the result, but possibly also a loss of confidence in web-based resources. Moreover, modelling data quality to share knowledge about uncertainty is necessary to produce and publish transparent Linked Open Usable Data. The success of the session "Guaranteeing data quality in archaeological Linked Open Data" at CAA International 2018 has raised awareness of many challenges related to this topic and encourages pursuing the debate.

For this session we invite contributions that addresses e.g. following issues:

- Identifying and strategies for correcting inconsistencies within the data;

- Identifying sources and dangers of incorrect or ambiguous data;

- Identifying duplicates across different LOD sources;

- Keeping track of the provenance of data as a means of solving errors and identifying their source;

- Defining metrics in order to rate data in respect to their quality;

- Setting up methodologies and tools in order to label or certify data sets based on their quality;

- Compiling trust levels based on various inputs such as provenance and quality level;

- Modelling uncertainty and vagueness in LOD (e.g. thesauri and CIDOC CRM);

- Dealing with ambiguities resulting from multiple links in the LOD cloud;

We encourage presenters to derive the problems from real-world datasets and to formulate proposals for solutions, preferably demonstrating (prototypes of) realised data driven web applications. As we target a broad and diverse audience because of the thematic relevance, the challenges described should also be integrated into their archaeological context (excavation, museum, archive, etc.).
Additional file 1 of Patient and public involvement and engagement (PPIE): how valuable and how hard? An evaluation of ALL_EARS@UoS PPIE group, 18 months on
Creators: name: Hough, Kate
name: Grasmeder, Mary
name: Parsons, Heather
name: Jones, William B
name: Smith, Sarah
name: Satchwell, Chris
name: Hobday, Ian
name: Taylor, Sarah
name: Newman, Tracey
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Biological Sciences not elsewhere classified
Science Policy

description: Supplementary Material 1: GRIPP2 Long Form checklist
Dilated Thoracic Duct Mimicking a Left Supraclavicular Mass
Creators: name: Malmierca Ordoqui, Patricia
Publisher: name: EURORAD
Year: 2018
Subjects: subject: Lymphatic
subject: CT
subject: Computer Applications-Detection, diagnosis
subject: Dilatation

description: Clinical History Image Findings Discussion Find Diagnosis Differential Diagnosis
description: male, 54 years
description: Clinical History: A 54-year-old man with alcoholic liver cirrhosis, gastroesophageal varices and portal hypertensive gastropathy was admitted with decompensated cirrhosis. Final Diagnosis: Dilated thoracic duct
title: Rapport de voyage, Normandie (1932) : Croisière, 1938
Creators: name: Bohec, Joseph
name: Cailloce, Joseph
name: Thoreux, Pierre
name: Villar, Henry
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2025
Subjects: subject: Compagnie Générale Transatlantique
subject: Transports maritimes - Histoire
subject: Marine marchande
subject: Journaux de bord

description: Chapitrage : Rapport général / du capitaine - Rapport du commandant adjoint - Rapport de croisière - Rapport du second - Rapport du médecin - Rapport d'inspecteurs
description: Source: French Lines & Compagnies, 1997 004 6285-01
description: Coverage: 1938-02-05/1938-02-27
Additional file 2 of Patient and public involvement and engagement (PPIE): how valuable and how hard? An evaluation of ALL_EARS@UoS PPIE group, 18 months on
Creators: name: Hough, Kate
name: Grasmeder, Mary
name: Parsons, Heather
name: Jones, William B
name: Smith, Sarah
name: Satchwell, Chris
name: Hobday, Ian
name: Taylor, Sarah
name: Newman, Tracey
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Biological Sciences not elsewhere classified
Science Policy

description: Supplementary Material 2: ALL_EARS@UoS Evaluation Questionnaire
Anomalous dimensions and splitting functions beyond the next-to-next-to-leading order
Creators: name: Vogt, A.
name: Herzog, F.
name: Moch, S.
name: Ruijl, B.
name: Ueda, T.
name: Vermaseren, J. A. M.
Publisher: name: Deutsches Elektronen-Synchrotron, DESY, Hamburg
Year: 2018

description: We report on recent progress on the splitting functions for the evolution of parton distributions and related quantities, the (lightlike) cusp anomalous dimensions, in perturbative QCD. New results are presented for the four-loop (next-to-next-to-next-to-leading order, N$^3$LO) contributions to the flavour-singlet splitting functions and the gluon cusp anomalous dimension. We present first results, the moments N=2 and N=3, for the five-loop (N$^4$LO) non-singlet splitting functions.
Additional file 3 of Patient and public involvement and engagement (PPIE): how valuable and how hard? An evaluation of ALL_EARS@UoS PPIE group, 18 months on
Creators: name: Hough, Kate
name: Grasmeder, Mary
name: Parsons, Heather
name: Jones, William B
name: Smith, Sarah
name: Satchwell, Chris
name: Hobday, Ian
name: Taylor, Sarah
name: Newman, Tracey
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Biological Sciences not elsewhere classified
Science Policy

description: Supplementary Material 3: ALL_EARS@UoS PPIE Action Plan
Additional file 4 of Patient and public involvement and engagement (PPIE): how valuable and how hard? An evaluation of ALL_EARS@UoS PPIE group, 18 months on
Creators: name: Hough, Kate
name: Grasmeder, Mary
name: Parsons, Heather
name: Jones, William B
name: Smith, Sarah
name: Satchwell, Chris
name: Hobday, Ian
name: Taylor, Sarah
name: Newman, Tracey
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Biological Sciences not elsewhere classified
Science Policy

description: Supplementary Material 4: Framework for reviewing documents
S29: Our Little Minions, Part 2: Small Tools With Major Impact
Creators: name: Mennenga, Moritz
name: Thiery, Florian
name: Visser, Ronald
Publisher: name: Zenodo
Year: 2018

description: In our daily work, small self-made scripts, home-grown small applications and little devices significantly help us to get work done. These little helpers often reduce our workload or optimize our workflows, although they are not often presented to the outside world. Instead, we generally focus on presenting the results of our research and silently use our small tools during our research. This session will focus on these small helpers (“little minions”,) and we invite researchers to share their tools so that the scientific community may benefit and - perhaps - create spontaneously special interest groups. This session aims at short presentations - “minion talks” (max. 10 minutes including discussion) - of small software or hardware solutions, not only focusing on field work / excavation technology, associated evaluation or methodical approaches in data driven archaeology. Each “minion talk” should explain the innovative character and mode of operation of the digital tool. The only restriction is, that the software, code or building instructions are open and freely available (e.g. GitHub). Proprietary products cannot be presented (but tools designed for them). We invite “minion talks” that present small tools or hardware inventions related but not limited to the following subjects:

- data processing

- measuring

- digital documentation

- GIS-Plugins

- Hands-on digital inventions (for excavations)

- Linked (Open) Data tools

- etc.

We invite speakers to submit an abstract. But after last years spontaneous success of “Stand-up-Science”, there will also be an opportunity to spontaneously participate and demonstrate what you have on your stick or laptop. If you want to participate without an abstract in the spontaneous section of the session, please send an email to us (even shortly before the conference). This is however not obligatory. Please come and spontaneously introduce your little minion!
sj-docx-1-gpi-10.1177_13684302221131029 – Supplemental material for Immediate and delayed effects of everyday racial discrimination on mental health among Black college students: A mixed-methods approach
Creators: name: Volpert-Esmond, Hannah I.
name: Landor, Antoinette M.
name: Bartholow, Bruce D.
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental material, sj-docx-1-gpi-10.1177_13684302221131029 for Immediate and delayed effects of everyday racial discrimination on mental health among Black college students: A mixed-methods approach by Hannah I. Volpert-Esmond, Antoinette M. Landor and Bruce D. Bartholow in Group Processes & Intergroup Relations
ELIXIR Compute Platform: Access, exchange and storage
Creators: name: Luděk Matyska
name: Nyrönen, Tommi
name: Newhouse, Steven
Publisher: name: F1000Research
Year: 2017

description: This presentation was part of the ELIXIR Special Track at the joint 25th Annual International Conference on Intelligent Systems for Molecular Biology and the 16th European Conference for Computational Biology (ISMB/ECCB) on 25 July 2017. ELIXIR Track one showcased to delegates the activities and outputs of ELIXIR’s five Platforms (Tools, Data, Interoperability, Compute and Training). Through talks from ELIXIR partners and interactive discussions, delegates saw the services and resources made available via ELIXIR, and how they could engage in and contribute to their development. ELIXIR Track two followed a similar format and showcased the outputs of ELIXIR’s Use Cases (Marine Metagenomics, Plant Sciences, Rare Diseases and Human Data) the Capacity Building programme and Industry Engagement.
Additional file 1 of Patient-centered respectful maternity care: a factor analysis contextualizing marginalized identities, trust, and informed choice
Creators: name: Glover, Annie
name: Holman, Carly
name: Boise, Patrick
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: Mental Health
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Supplementary Material 1
ELIXIR Interoperability Platform: Integration of data and services
Creators: name: Morrison, Norman
name: Evelo, Chris
Publisher: name: F1000Research
Year: 2017

description: This presentation was part of the ELIXIR Special Track at the joint 25th Annual International Conference on Intelligent Systems for Molecular Biology and the 16th European Conference for Computational Biology (ISMB/ECCB) on 25 July 2017. ELIXIR Track one showcased to delegates the activities and outputs of ELIXIR’s five Platforms (Tools, Data, Interoperability, Compute and Training). Through talks from ELIXIR partners and interactive discussions, delegates saw the services and resources made available via ELIXIR, and how they could engage in and contribute to their development. ELIXIR Track two followed a similar format and showcased the outputs of ELIXIR’s Use Cases (Marine Metagenomics, Plant Sciences, Rare Diseases and Human Data), the Capacity Building programme and Industry Engagement.