cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Music and Numbers
Creators: name: S. Subbulakshmi
Publisher: name: gjrpublication
Year: 2024

description: The carnatic music of south India is broadly classified into (tala) rhythmic and melodic (raga) structures. Aesthetics and complexity of Carnatic music is mainly based on Numbers especially through concepts like tala (rhythm) and raga (melody). Both mathematically and conceptually, Music and numbers are deeply intertwined. In melodic the swaras, ragas, sthayis (octaves), music composition structures, Frequency, over tones, Alapana and Kalpoana Swaras in Creative music are framed with numbers which are highly appreciable. So, 72 Major (Melakarta) Ragas and the system organizes the ragas into 72 parent scales, which are created by systematically varying the positions of the swaras. This is a perfect example of the mathematical arrangement of notes. The complex mathematical structures of compositions with rhythmic and melodic patterns exhibit symmetry and balance, reflecting their understanding of both music and numbers. The tala system is more complicated one which are mainly expressed through the percussion instruments. 7 talas, 35 talas, 175 talas, taladasa pranas, with jathi, yathi, gati, speed, prasthara are shows the number oriented tala system. Yati refers to the shape of rhythmic patterns based on numbers. Musical intervals often have simple mathematical ratios. In a tani avartanam, percussionists especially mridangam players engage in highly mathematical improvisations. They break down the tala cycle into intricate subdivisions and create rhythmic phrases that adhere to strict numerical patterns. In jugalbandi all artists must align their improvisations with the tala structure, often using numerical calculations to ensure that their rhythmic cycles synchronize.
title: ADCO, Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Cart. 32 (G 136), 745 folios, f. 0794
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Archives départementales de la Côte-d'Or, Cart. 32 (G 136), 745 folios, f. 0794, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Archives départementales de la Côte-d'Or, Cart. 32 (G 136), 745 folios, f. 0794, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
Single-nucleus multi-omics profiling of Oryza Sativa reveals yield-determining regulatory landscapes
Creators: name: 何世典(Shidian He)
Publisher: name: CNGB
Year: 2024
Subjects: Raw sequence reads
Epigenomics
Transcriptome or Gene expression
Multiisolate

description: Single-nucleus sequencing techniques provided valuable insights into discovering cell type heterogeneity of rice in previous studies on specific tissues but have not yet revealed the regulatory events on a multi-tissue level and underlying yield-determining factors. Our study addressed this gap by constructing single-nucleus chromatin accessibility and transcriptional profiles including multiple tissues and developmental stages in rice. We performed single-nucleus ATAC sequencing (snATAC-seq) and single-nucleus RNA sequencing (snRNA-seq) on 6 and 10 samples respectively from critical developmental stages and tissues. The single nucleus from 10-day-old leaves (10dLeaf), 10-day-old roots (10dRoot), 0.5-cm-long inflorescence meristems (IM0.5cm), 0.5-cm-long inflorescence meristems (IM1cm), and 60-day-old root tips (60d root tip) were collected and sent for both snATAC-seq and snRNA-seq, while single nuclei from 10-day-old shoot (10dShoot) were uniquely collected for snATAC-seq, and single nucleus from 90-day-old flag leaves (90dFlagLeaf), 120-day-old flag leaves (120dFlagLeaf), shoot apical meristems (SAM), zygotes (Zygote), and mature pollens (MaturePollen) were uniquely collected for snRNA-seq. After filtering, we harvested 91,109 and 112,702 high-quality nuclei from snATAC-seq and snRNA-seq, respectively.
Additional file 14 of Sorting and packaging of RNA into extracellular vesicles shape intracellular transcript levels
Creators: name: O’Grady, Tina
name: Njock, Makon-Sébastien
name: Lion, Michelle
name: Bruyr, Jonathan
name: Mariavelle, Emeline
name: Galvan, Bartimée
name: Boeckx, Amandine
name: Struman, Ingrid
name: Dequiedt, Franck
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 14: Figure S6. (A) Gene Ontology analysis of protein-coding genes altered in cells by coculture. For each category the top 10 most significantly enriched GO terms (FDR < 0.05) are displayed. BP = Biological Process, CC = Cellular Compartment, MF = Molecular Function. Individual values can be found in Additional file 17. (B) Volcano plot of log2 fold changes by RNA-Seq of mRNA and lncRNA genes (combined) in EVs derived from tumor-exposed cells vs. EVs derived from unexposed cells. (C) Log2 fold change in tumor-exposed cells vs. unexposed cells and in EVs derived from tumor-exposed cells vs. EVs derived from unexposed cells for the most increased (left) and decreased (right) mRNA and lncRNA genes significantly changed in cells. Error bars represent standard error of log2 fold change. Individual values can be found in Additional file 17. (D-E) Depletion of E2F_TARGETS_V1 gene set (D) and G2M_TARGETS gene set (E) in tumor-exposed vs. unexposed cells and enrichment of the same gene set in EVs derived from tumor-exposed vs. unexposed cells. All analyses were performed using 3 EV and 3 cell samples.
title: ADCO, Cartulaire de Cîteaux pour la grange et seigneurie d'Ouges (XVe siècle), Cart. 173 (11 H 939), 226 folios, f. 0263
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2015
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire

description: Cartulaire de Cîteaux pour la grange et seigneurie d'Ouges (XVe siècle), Archives départementales de la Côte-d'Or, Cart. 173 (11 H 939), 226 folios, f. 0263, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de Cîteaux pour la grange et seigneurie d'Ouges (XVe siècle), Archives départementales de la Côte-d'Or, Cart. 173 (11 H 939), 226 folios, f. 0263, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Unraveling the differentiation roadmap of Primed PSCs to Trophoblast Cells in Non-Human Primates at Single-Cell Multi-Omics
Creators: name: 李荣海(Li)
Publisher: name: CNGB
Year: 2024
Subjects: Epigenomics
Transcriptome or Gene expression
Multiisolate
Model organism

description: Recent advancements in stem cell biology have highlighted the potential of primed pluripotent stem cells (PSCs) to differentiate into various cell lineages. However, the differentiation trajectory of primed PSCs to trophoblast cells, particularly in non-human primates, remains less explored. This study aims to delineate this differentiation pathway at a single-cell multi-omics level. Utilizing advanced single-cell transcriptomic and epigenomic profiling techniques, we investigated the molecular and cellular dynamics of primed PSCs as they differentiate into trophoblast cells in a non-human primate model. Our findings reveal a complex network of gene regulation and signaling pathways that guide this transition, highlighting similarities and distinctions from human models. The study provides novel insights into the cellular mechanisms underlying early embryonic development in primates and underscores the potential of primed PSCs in regenerative medicine and developmental biology research.
Preservation of Haemostasis with Anti-thrombotic Serotonin Antagonism
Creators: name: Noble, Mark IM
name: Drake-Holland, Angela J
Publisher: name: figshare
Year: 2018
Subjects: Hematology

description: An enquiry into the lack of attention awarded to serotonin antagonism in the treatment of arterial thrombosis revealed that the mode of action of serotonin and its platelet receptor antagonists was an action upon thrombus growth, and not, as with other anti-platelet drugs upon the initiation of thrombosis. This lack of effect could explain why this approach has been considered not to be effective. However under conditions of arterial stenosis in which there is platelet activation by increased shear stress, and during the growth phase of arterial thrombi, serotonin 5HT2A antagonism has been demonstrated to have great potentcy in dispersing thrombotic obstruction to blood flow. This mode of action, the lack of participation of serotonin in haemostasis, and the absence of serotonin in wounds accounts for the proven lack of effect of effect of pure specific 5HT2A antagonists (i.e., not those with other actions) on operative bleeding and skin bleeding times. This lack of effect on haemostasis solves the dosing problem encountered with other anti-thrombotic drugs, with which drug concentration cannot be controlled with single fixed doses, leading to the association between increased anti-thrombotic efficacy and increased bleeding complications. Thus 5HT2A antagonism appears to be the preferred approach, from the point of view of safety and lack of bleeding risk; this consideration applies particularly to thrombosis therapy in the context of traumatic accidents, surgical operations and invasive procedures such as angioplasty.
Additional file 15 of Sorting and packaging of RNA into extracellular vesicles shape intracellular transcript levels
Creators: name: O’Grady, Tina
name: Njock, Makon-Sébastien
name: Lion, Michelle
name: Bruyr, Jonathan
name: Mariavelle, Emeline
name: Galvan, Bartimée
name: Boeckx, Amandine
name: Struman, Ingrid
name: Dequiedt, Franck
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 15: Figure S7. (A) Western blot of lysate from cells treated with GW4869 or DMSO and from EVs derived from cells treated with GW4869 or DMSO, using indicated antibodies (left). (B-C) Distributions of RNA-Seq log2 fold changes of (B) protein-coding genes and (C) lncRNA enriched in EVs (green) and not enriched in EVs (purple) in cells treated with GW4869. N = 3. (D) Western blot of lysates from cells treated with Src Inhibitor 1 or DMSO and from EVs derived from cells treated with Src inhibitor 1 or DMSO, using antibodies to SDCBP (exosome marker) or tubulin (control). (E) Western blot of lysates from cells treated with ketoconazole or DMSO and from EVs derived from from cells treated with keotconazole or DMSO, using antibodies to SDCBP (exosome marker) or tubulin (control). (F) Enrichment in EVs vs. cells by RNA-Seq (green scale; n = 3) and indication of GGAG motif, UAG motif or HNRNPA2B1 CLIP peak presence in indicated transcripts. (G-I) Western blots of lysates from cells treated with control siRNA (siCTRL) in comparison with cells treated with (G) siHNRNPA2B1 #1, (H) siHNRNPA2B1 #2 or (I) siHNRNPA1 using indicated antibodies. Uncropped images of blots can be found in Additional file 18.
Cytomegalovirus pneumonia and Cryptogenic organizing pneumonia following pediatric stem cell transplantation for leukemia
Creators: name: Kaya, Zühre
name: Şişmanlar, Tuba
name: Ayşe Tana Aslan
name: Boyunağa, Öznur Konuş
name: Işıl Fidan Balcı
name: İdil Yenicesu
name: Koçak, Ülker
Publisher: name: figshare
Year: 2018
Subjects: Hematology

description: Background: Knowledge of pulmonary complications (PCs) in children after hematopoetic stem cell transplantation (allo-HSCT) is limited; most data are from adult studies. Case: We describe a 8 year old girl with high risk acute myeloid leukemia who developed graft versus host disease (GVHD) on Day 20, Cytomegalovirus (CMV) pneumonia on Day 50 and Cryptogenic organizing pneumonia (COP) on Day 170 after allo-HSCT. Discussion: Cryptogenic organizing pneumonia is a rare noninfectious PCs that can be idiopathic or have several risk factors as a secondary causes, such as viral respiratory infections, drugs, GVHD and allo-HSCT. Viral respiratory infections and alloimmune lung syndromes have been reported in a few patients who have undergone transplantation. Conclusion: Transplant physicians should be kept in mind for the development of alloimmune lung syndrome in the form of COP following CMV pneumonia in patients after allo- HSCT
Additional file 18 of Sorting and packaging of RNA into extracellular vesicles shape intracellular transcript levels
Creators: name: O’Grady, Tina
name: Njock, Makon-Sébastien
name: Lion, Michelle
name: Bruyr, Jonathan
name: Mariavelle, Emeline
name: Galvan, Bartimée
name: Boeckx, Amandine
name: Struman, Ingrid
name: Dequiedt, Franck
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 18. Uncropped gels and blots.
Additional file 19 of Sorting and packaging of RNA into extracellular vesicles shape intracellular transcript levels
Creators: name: O’Grady, Tina
name: Njock, Makon-Sébastien
name: Lion, Michelle
name: Bruyr, Jonathan
name: Mariavelle, Emeline
name: Galvan, Bartimée
name: Boeckx, Amandine
name: Struman, Ingrid
name: Dequiedt, Franck
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Table S1. PCR primers
Bounded Cohomology of Finitely Generated Kleinian Groups
Creators: name: Farre, James
Publisher: name: arXiv
Year: 2017
Subjects: subject: Geometric Topology (math.GT)
subject: Group Theory (math.GR)
subject: FOS: Mathematics

description: Any action of a group $Γ$ on $\mathbb H^3$ by isometries yields a class in degree three bounded cohomology by pulling back the volume cocycle to $Γ$. We prove that the bounded cohomology of finitely generated Kleinian groups without parabolic elements distinguishes the asymptotic geometry of geometrically infinite ends of hyperbolic $3$-manifolds. That is, if two homotopy equivalent hyperbolic manifolds with infinite volume and without parabolic cusps have different geometrically infinite end invariants, then they define a $2$ dimensional subspace of bounded cohomology. Our techniques apply to classes of hyperbolic $3$-manifolds that have sufficiently different end invariants, and we give explicit bases for vector subspaces whose dimension is uncountable. We also show that these bases are uniformly separated in pseudo-norm, extending results of Soma. The technical machinery of the Ending Lamination Theorem allows us to analyze the geometrically infinite ends of hyperbolic $3$-manifolds with unbounded geometry.
description: 36 pages, 6 figures, V2 includes a much stronger version of a main result concerning the uniform separation of bounded fundamental classes in pseudonorm, V3 incorporates referee suggestions, V4 minor changes. To appear in GAFA
One-pot three-component tandem reaction: Synthesis of aryl/alkyl cyanamides libraries and their further conversion into tetrazole derivatives
Creators: name: Usharani Mandapati
name: Pavan Mandapati
name: Srinivasarao Pinapati
name: Tamminana, Ramana
name: Rameshraju Rudraraju
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: We have developed methodology for the synthesis of aryl/alkyl cyanamides from amines in one-pot four steps reaction using cheap, readily available and air stable copper source as catalyst under mild reaction conditions. We have also studied the application of cyanamides. In this connection, we could construct aryl tetrazolamine from cyanamides using click reaction
Additional file 1 of Sorting and packaging of RNA into extracellular vesicles shape intracellular transcript levels
Creators: name: O’Grady, Tina
name: Njock, Makon-Sébastien
name: Lion, Michelle
name: Bruyr, Jonathan
name: Mariavelle, Emeline
name: Galvan, Bartimée
name: Boeckx, Amandine
name: Struman, Ingrid
name: Dequiedt, Franck
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Figure S1. Validation of extracellular vesicle isolation. (A) Representative western blot of cell and EV lysates using indicated antibodies. (B) DLS assessment of particle sizes in representative EV-enriched sample (C) TEM images showing vesicles in representative EV-enriched sample. Scale bar = 100 nm (D) Bioanalyzer traces of total RNA extracted from representative EV-enriched sample (top) and RNA-Seq library made from EV RNA, with fragments >200 nt amplified (bottom).
Additional file 1 of Beautiful Pietàs in South Tyrol (Northern Italy): local or imported works of art?
Creators: name: Dariz, Petra
name: Wortmann, Ulrich G.
name: Vogl, Jochen
name: Schmid, Thomas
Publisher: name: figshare
Year: 2022
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 1. Materials and methods.
Additional file 2 of Beautiful Pietàs in South Tyrol (Northern Italy): local or imported works of art?
Creators: name: Dariz, Petra
name: Wortmann, Ulrich G.
name: Vogl, Jochen
name: Schmid, Thomas
Publisher: name: figshare
Year: 2022
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 2. Results and discussion.
Additional file 2 of Sorting and packaging of RNA into extracellular vesicles shape intracellular transcript levels
Creators: name: O’Grady, Tina
name: Njock, Makon-Sébastien
name: Lion, Michelle
name: Bruyr, Jonathan
name: Mariavelle, Emeline
name: Galvan, Bartimée
name: Boeckx, Amandine
name: Struman, Ingrid
name: Dequiedt, Franck
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2: Figure S2. (A) Plot of RNA-Seq reads from 3 EV and 3 cell samples that map to more than one genomic location. Reads mapping to rRNA are excluded. Individual values can be found in Additional file 17. (B) Hierarchical clustering of long RNA transcripts by abundance determined by RNA-Seq in 3 EV and 3 cell samples. Data are read counts transformed using the Variance Stabilizing Transformation, top 200 transcripts with the highest variance across samples are displayed. (C) RNA-Seq read coverage (top) and RT-PCR amplicons (bottom) of HNRNPA1 (D), ANP32B (E), RPL14 (F) and RPL41 (F) mRNA. (G) RNA-Seq read coverage (top) and RT-PCR amplicons (bottom) of lncRNA GAS5. NT = no template, no-RT = RNA without reverse transcriptase. Uncropped gel images can be found in Additional file 18.
The influence of Infliximab on the development of Experimental Pancreatitis
Creators: name: Lychkova AE
name: Golubev Yu Yu
name: Puzikov AM
Publisher: name: figshare
Year: 2018
Subjects: subject: 110307 Gastroenterology and Hepatology
subject: FOS: Clinical medicine

description: Aim: To identify the possibility of correction of motor function of the gastro-intestinal tract in experimental pancreatitis with the administration of infliximab. Material and methods: Pancreatitis was modeled by the administration of picrylsulfonic acid retrogradely into the pancreatic duct of rat (n=5) and 4 animals were control. Electromyogram (EMG) of the pancreatic duct was monitored immediately after the administration of picrylsulfonic acid and on the 15th day of pancreatitis simulation before and after the administration of infliximab. The morphological investigation of pancreas was conducted on the 15th day of development of pancreatitis and on the 15th day of treatment of pancreatitis with infliximab. Results: Infliximab restores the motor function of pancreatic duct and structure of pancreas during acute pancreatitis. Conclusion: Protective action of infliximab during acute pancreatitis was shown.
Does the addition of preoperative lifestyle modifications to an exercise program improve patient outcomes following total knee replacement surgery when compared to usual care? A systematic review.
Creators: name: Page, Kristen
name: Rabajoli, Alessandro
name: Kan, Adrian
name: Nyomi Devine
name: Sattler, Larissa
Publisher: name: OSF Registries
Year: 2023
Subjects: subject: Medicine and Health Sciences

description: This systematic review aims to investigate the impact of introducing preoperative lifestyle modifications to an exercise program on patient outcomes following total knee replacement (TKR) surgery, in comparison to usual care. The primary objective of this project is to investigate the existing evidence and literature to evaluate the potential advantages and disadvantages associated with the approach in relation to patient outcomes following total knee replacement (TKR) surgery. To attain this objective, our project will involve a thorough examination of existing literature, data extraction using a template based on the Cochrane Consumers and Communication Review Group data collection handbook, and the synthesis and discussion of findings. Additionally, our aim is to contribute substantively to the field of orthopedics and rehabilitation, providing valuable insights and recommendations that may significantly influence and enhance the quality of patient care, treatment strategies, and overall outcomes in the context of TKR surgery. By doing so, this project aspires to serve as a resource for clinicians, healthcare professionals, and healthcare institutions, facilitating evidence-based practices and promoting optimal patient care throughout the TKR journey.
Additional file 4 of Sorting and packaging of RNA into extracellular vesicles shape intracellular transcript levels
Creators: name: O’Grady, Tina
name: Njock, Makon-Sébastien
name: Lion, Michelle
name: Bruyr, Jonathan
name: Mariavelle, Emeline
name: Galvan, Bartimée
name: Boeckx, Amandine
name: Struman, Ingrid
name: Dequiedt, Franck
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 4: Figure S3. (A) EV enrichment/depletion of expressed antisense (AS) genes and their protein-coding (PC) complements. Red = significantly enriched or depleted antisense gene. Blue = significantly enriched or depleted protein-coding gene. Purple = both antisense gene and protein-coding gene are significantly enriched/depleted. Padj < 0.1 for significance. N = 5526 expressed protein-coding/antisense gene pairs. (B) EV enrichment/depletion of expressed long intergenic noncoding RNA (lincRNA) genes and the nearest protein-coding genes. Red = significantly enriched or depleted lincRNA. Blue = significantly enriched or depleted protein-coding gene. Purple = both lincRNA and neighboring protein-coding gene are significantly enriched/depleted. Padj < 0.1 for significance. N = 7592 expressed lincRNA/neighboring protein-coding gene pairs. (C—F) Violin plots of mRNA transcript length (C), 5’UTR length (D), CDS length (E), 3’UTR length (F) for EV-enriched (n = 609) and EV-depleted (n = 680) protein-coding genes. (G) Violin plot of lncRNA transcript length for EV-enriched (n = 72) and EV-depleted (n = 123) lncRNA genes. (H-I) Violin plots of number of exons per kilobase of transcript length for EV-enriched and EV-depleted protein-coding (H) or lncRNA genes (I). (J) Violin plot of transcript half-life in 4SU-labeled LCLs for EV-enriched and EV-depleted transcripts (K) Violin plot of transcript half-life in HeLa cell BRIC-Seq for EV-enriched and EV-depleted transcripts (L) Violin plot of transcript half-life in Actinomycin D-treated A673 cell RNA-Seq for EV-enriched and EV-depleted transcripts. For all violin plots, medians are indicated above each violin and grey dotted lines indicate median of all expressed genes. P-values calculated by Welch two-sample t-test are indicated. (M-N) Plots of occurrences of ARE elements per kilobase of transcript in 3’ UTRs (M) and 5’ UTRs (N) of EV-enriched and EV-depleted transcripts. Individual values can be found in Additional file 17. All analyses were performed using 3 EV and 3 cell samples. All p-values for differences are calculated by Welch two-sample t-test.
title: ADCO, Cartulaire du prieuré de Saint-Vivant-sous-Vergy, dépendant de l’abbaye de Cluny (XIVe siècle), Cart. 231 (21 H), 40 folios, f. 0013r
Creators: name: de la Côte-d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2010
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Cartulaire du prieuré de Saint-Vivant-sous-Vergy, dépendant de l’abbaye de Cluny (XIVe siècle), Archives départementales de la Côte-d'Or, Cart. 231 (21 H), 40 folios. Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire du prieuré de Saint-Vivant-sous-Vergy, dépendant de l’abbaye de Cluny (XIVe siècle), Archives départementales de la Côte-d'Or, Cart. 231 (21 H), 40 folios, f. 0013r, in Projet CBMA - Corpus Burgundiae Medii Aevi \[Ressource en ligne\], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Vivant de Vergy
description: Provenance: http://www.wikidata.org/entity/Q15945018
QSAR modelling using combined simple competitive learning networks and RBF neural networks
Creators: name: R. Sheikhpour
name: M. A. Sarram
name: M. Rezaeian
name: E. Sheikhpour
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: The aim of this study was to propose a QSAR modelling approach based on the combination of simple competitive learning (SCL) networks with radial basis function (RBF) neural networks for predicting the biological activity of chemical compounds. The proposed QSAR method consisted of two phases. In the first phase, an SCL network was applied to determine the centres of an RBF neural network. In the second phase, the RBF neural network was used to predict the biological activity of various phenols and Rho kinase (ROCK) inhibitors. The predictive ability of the proposed QSAR models was evaluated and compared with other QSAR models using external validation. The results of this study showed that the proposed QSAR modelling approach leads to better performances than other models in predicting the biological activity of chemical compounds. This indicated the efficiency of simple competitive learning networks in determining the centres of RBF neural networks.
Localized $4σ$ and $5σ$ Dijet Mass Excesses in ALEPH LEP2 Four-Jet Events
Creators: name: Kile, Jennifer
name: von Wimmersperg-Toeller, Julian
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We investigate an excess observed in hadronic events in the archived LEP2 ALEPH data. This excess was observed at preselection level during data-MC comparisons of four-jet events when no search was being performed. The events are clustered into four jets and paired such that the mass difference between the two dijet systems is minimized. The excess occurs in the region $M_1+M_2\sim 110\mbox{ GeV}$; about half of the excess is concentrated in the region $M_1\sim 80\mbox{ GeV}$, $M_2\sim 25\mbox{ GeV}$, with a local significance between $4.7σ$ and $5.5σ$, depending on assumptions about hadronization uncertainties. The other half of the events are in a broad excess near $M_1\sim M_2\sim 55\mbox{ GeV}$; these display a local significance of $4.1-4.5σ$. We investigate the effects of changing the SM QCD Monte Carlo sample, the jet-clustering algorithm, and the jet rescaling method. We find that the excess is remarkably robust under these changes, and we find no source of systematic uncertainty that can explain the excess. No analogue of the excess is seen at LEP1.
description: 40 pages, 17 figures. Version published in JHEP. Detector section removed, S/B and SM expectation figure added, expanded discussion of hadronization uncertainties, small changes in systematic errors due to LEP1 data statistics, table added with significance as a function of center-of-mass energy, changes in text
Supplementary Information (SI Materials and Methods, Figures S1-S5, and Tables S1-S11) from Evidence for parent-of-origin effects and interparental conflict in seeds of an ancient flowering plant lineage
Creators: name: Povilus, Rebecca A.
name: Diggle, Pamela K.
name: Friedman, William E.
Publisher: name: The Royal Society
Year: 2018
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Plant Biology

description: Supplementary Information
Iterative Sequential Action Control for Stable, Model-Based Control of Nonlinear Systems
Creators: name: Tzorakoleftherakis, Emmanouil
name: Murphey, Todd
Publisher: name: arXiv
Year: 2017
Subjects: subject: Robotics (cs.RO)
subject: Systems and Control (eess.SY)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: This paper presents iterative Sequential Action Control (iSAC), a receding horizon approach for control of nonlinear systems. The iSAC method has a closed-form open-loop solution, which is iteratively updated between time steps by introducing constant control values applied for short duration. Application of a contractive constraint on the cost is shown to lead to closed-loop asymptotic stability under mild assumptions. The effect of asymptotically decaying disturbances on system trajectories is also examined. To demonstrate the applicability of iSAC to a variety of systems and conditions, we employ five different systems, including a 13-dimensional quaternion-based quadrotor. Each system is tested in different scenarios, ranging from feasible and infeasible trajectory tracking, to setpoint stabilization, with or without the presence of external disturbances. Finally, limitations of this work are discussed.
Additional file 5 of Sorting and packaging of RNA into extracellular vesicles shape intracellular transcript levels
Creators: name: O’Grady, Tina
name: Njock, Makon-Sébastien
name: Lion, Michelle
name: Bruyr, Jonathan
name: Mariavelle, Emeline
name: Galvan, Bartimée
name: Boeckx, Amandine
name: Struman, Ingrid
name: Dequiedt, Franck
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 5: Figure S4. (A) Violin plots of percent GC in EV-enriched (n = 681) and EV-depleted (n = 803) mRNA and lncRNA transcripts combined (A), mRNA transcripts alone (B; n = 609 EV-enriched, n = 680 EV-depleted) and lncRNA transcripts alone (C; n = 72 EV-enriched, n = 123 EV-depleted). Median is indicated above each violin. P-value calculated by Welch two-sample t-test is indicated. Grey dotted line indicates median of all expressed genes. All analyses were performed using 3 EV and 3 cell samples.
The development of Phyllostachys edulis seedlings internodes
Creators: name: 褚雪(Chuxue)
Publisher: name: CNGB
Year: 2024
Subjects: Raw sequence reads
Monoisolate
Other
Plant development

description: Compared with the bamboo of bamboo, bamboo seedling is short, through seed germination, the growth amount is large, easy to manage in the laboratory, and is often used as a verification for the study of bamboo growth height. However, at present, the growth model of bamboo seedling between nodes has not been established, which brings great limitations to the accurate study of bamboo growth. Therefore, this study intends to use morphology, anatomy, transcriptome analysis and other methods to establish the spatial and temporal growth model between nodes of bamboo shoots, improve the verification technology system of bamboo shoots, and provide theoretical basis for the rational use of bamboo shoots for related experiments.
Random Forests, Decision Trees, and Categorical Predictors: The "Absent Levels" Problem
Creators: name: Au, Timothy C.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Machine Learning (stat.ML)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: One advantage of decision tree based methods like random forests is their ability to natively handle categorical predictors without having to first transform them (e.g., by using feature engineering techniques). However, in this paper, we show how this capability can lead to an inherent "absent levels" problem for decision tree based methods that has never been thoroughly discussed, and whose consequences have never been carefully explored. This problem occurs whenever there is an indeterminacy over how to handle an observation that has reached a categorical split which was determined when the observation in question's level was absent during training. Although these incidents may appear to be innocuous, by using Leo Breiman and Adele Cutler's random forests FORTRAN code and the randomForest R package (Liaw and Wiener, 2002) as motivating case studies, we examine how overlooking the absent levels problem can systematically bias a model. Furthermore, by using three real data examples, we illustrate how absent levels can dramatically alter a model's performance in practice, and we empirically demonstrate how some simple heuristics can be used to help mitigate the effects of the absent levels problem until a more robust theoretical solution is found.
description: Updated to the published version that appears at http://www.jmlr.org/papers/volume19/16-474/16-474.pdf
Additional file 6 of Sorting and packaging of RNA into extracellular vesicles shape intracellular transcript levels
Creators: name: O’Grady, Tina
name: Njock, Makon-Sébastien
name: Lion, Michelle
name: Bruyr, Jonathan
name: Mariavelle, Emeline
name: Galvan, Bartimée
name: Boeckx, Amandine
name: Struman, Ingrid
name: Dequiedt, Franck
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 6: Figure S5. (A) mRNA and (B) lncRNA abundance from RNA-Seq in VEGF-treated cells and their EVs. TPM = transcripts per million. TPM values are averaged across 3 replicates. (C) Gene Ontology analysis of genes altered in cells by VEGF treatment. For each GO category the ten significant (FDR < 0.05) terms with the lowest p-values are displayed. BP = Biological Process, CC = Cellular Component, MF = Molecular Function. Individual values can be found in Additional file 17. (D) Volcano plot of log2 fold changes by RNA-Seq of mRNA and lncRNA genes (combined) in EVs derived from VEGF-treated cells vs. EVs derived from untreated cells. (E) Volcano plot of log2 fold changes by RNA-Seq of mRNA and lncRNA genes in VEGF-treated cells vs. untreated cells. All analyses were performed using 3 EV and 3 cell samples.
Additional file 1 of An integrated modelling methodology for estimating global incidence and prevalence of hereditary spastic paraplegia subtypes SPG4, SPG7, SPG11, and SPG15
Creators: name: Vander Stichele, Geert
name: Durr, Alexandra
name: Yoon, Grace
name: Schüle, Rebecca
name: Blackstone, Craig
name: Esposito, Giovanni
name: Buffel, Connor
name: Oliveira, Inês
name: Freitag, Christian
name: van Rooijen, Stephane
name: Hoffmann, Stéphanie
name: Thielemans, Leen
name: Cowling, Belinda S.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1.
Weak commutativity and finiteness properties of groups
Creators: name: Bridson, Martin R
name: Kochloukova, Dessislava H
Publisher: name: arXiv
Year: 2017
Subjects: subject: Group Theory (math.GR)
subject: FOS: Mathematics
subject: Primary 20F05, Secondary 20J05, 20E06

description: We consider the group $\mathfrak{X}(G)$ obtained from $G\ast G$ by forcing each element $g$ in the first free factor to commute with the copy of $g$ in the second free factor. Deceptively complicated finitely presented groups arise from this construction: $\mathfrak{X}(G)$ is finitely presented if and only if $G$ is finitely presented, but if $F$ is a non-abelian free group of finite rank then $\mathfrak{X}(F)$ has a subgroup of finite index whose third homology is not finitely generated.
description: 12 pages, 2 figures. Final version to appear in Bulletin of the London Math Soc
Additional file 2 of Concepts of health in different contexts: a scoping review
Creators: name: van Druten, V. P.
name: Bartels, E. A.
name: van de Mheen, D.
name: de Vries, E.
name: Kerckhoffs, A. P. M.
name: Nahar-van Venrooij, L. M. W.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy

description: Additional file 2: Supplementary Table 2A. Included articles discussing health from a general population perspective. Supplementary Table 2B. Included articles discussing health from a care workers perspective. Supplementary Table 2C. Included articles discussing health from a patient’s perspective. Supplementary Table 2D. Included articles discussing health from the perspective of elderly people. Supplementary Table 2E. Included articles discussing health from a philosophical perspective. Supplementary Table 2F. Included articles discussing health from a theological perspective. Supplementary Table 2G. Included articles discussing health from a context specific perspective.
Additional file 1 of Concepts of health in different contexts: a scoping review
Creators: name: van Druten, V. P.
name: Bartels, E. A.
name: van de Mheen, D.
name: de Vries, E.
name: Kerckhoffs, A. P. M.
name: Nahar-van Venrooij, L. M. W.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy

description: Additional file 1: Supplementary Table 1. The coding scheme; identified subthemes and codes for theme 1, the concept of health.
Few-Example Object Detection with Model Communication
Creators: name: Dong, Xuanyi
name: Zheng, Liang
name: Ma, Fan
name: Yang, Yi
name: Meng, Deyu
Publisher: name: arXiv
Year: 2017
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: In this paper, we study object detection using a large pool of unlabeled images and only a few labeled images per category, named "few-example object detection". The key challenge consists in generating trustworthy training samples as many as possible from the pool. Using few training examples as seeds, our method iterates between model training and high-confidence sample selection. In training, easy samples are generated first and, then the poorly initialized model undergoes improvement. As the model becomes more discriminative, challenging but reliable samples are selected. After that, another round of model improvement takes place. To further improve the precision and recall of the generated training samples, we embed multiple detection models in our framework, which has proven to outperform the single model baseline and the model ensemble method. Experiments on PASCAL VOC'07, MS COCO'14, and ILSVRC'13 indicate that by using as few as three or four samples selected for each category, our method produces very competitive results when compared to the state-of-the-art weakly-supervised approaches using a large number of image-level labels.
description: Accepted to IEEE Transactions on Pattern Analysis and Machine Intelligence (TPAMI) 2018
title: The new politics of the welfare state in the age of migration
title: analysis of the immigration-welfare state nexus and the role of multidimensionality of the welfare state
titleType: Subtitle
Creators: name: Yun, Tae Kyeong
Publisher: name: Freie Universität Berlin
Year: 2020
Subjects: subject: migration
subject: welfare state
subject: social policy
subject: public opinion
subject: preference for redistribution
subject: 300 Social sciences::300 Social sciences, Sociology, Anthropology::301 Sociology and anthropology

description: In times of increasing international migrations, there has been growing interest in understanding the consequences of immigration to the welfare state. Previous literature has been inconclusive: one the one hand, scholars argue that immigration undermines public support for the welfare state (efficiency hypothesis). On the other hand, there have been studies suggesting that immigration might increase support for the welfare state (compensation hypothesis). Hence, this research proposes two mechanisms that provide dynamic perspectives into the existing literature: solidarity and perceived risk effects. Each of the effects investigates how different levels of interpersonal trust and occupations influence the welfare support of people with the inflows of immigrants. Furthermore, this research highlights the multidimensionality of the welfare state within the analysis of immigration-welfare state nexus by differentiating social insurance (pension and unemployment policies) and social investment policies (childcare policy). Based on multi-level linear regression models by using the data from the European Social Survey (2008/2016), the findings show a variety of outcomes across different years and social policies. There is evidence that immigration possibly undermines people’s support for social policies in recent years, especially for social insurance policies. The low level of trust and the higher degree of perceived risk associated with immigration appear to lead to lesser support only for the unemployment policy, whereas the case of pension policy shows the opposite. The childcare policy as a social investment policy report not statistically significant results, yet the findings implicate that people might be more supportive of childcare policy with inflows of immigrants. Consequently, this research reveals that there are different directions of people’s support towards social insurance and social investment policies regarding the effect of immigration. Furthermore, when the trade-off question is considered, people prefer the social insurance policy over social investment policy. As a result, this research not only attempts to provide dynamics of immigration-welfare state nexus but also shows intricate implications of it.
Rational Maps with Invariant Surfaces
Creators: name: Joshi, N.
name: Viallet, CM.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: FOS: Physical sciences

description: We provide new examples of integrable rational maps in four dimensions with two rational invariants, which have unexpected geometric properties, as for example orbits confined to non algebraic varieties, and fall outside classes studied by earlier authors. We can reconstruct the map from both invariants. One of the invariants defines the map unambiguously, while the other invariant also defines a new map leading to non trivial fibrations of the space of initial conditions.
description: 13 pages, 1 figures
The variation of microorganisms in an ectopic fermentation system
Creators: name: 易明
Publisher: name: CNGB
Year: 2024
Subjects: Raw sequence reads
Environment
Environmental

description: This project employs ectopic fermentation system to treat large-scale pig farm manure. During the experimental process, solid samples from different treatment groups were collected on days 0, 6, and 12 for metagenomic sequencing.
Highly oriented EuO nanocrystalline films via reduction process - NIR optical response
Creators: name: Mariscal, Antonio
name: Quesada, Adrián
name: Martín-Luengo, Aitana Tarazaga
name: García, Miguel Ángel
name: Bonanni, Alberta
name: Fernández, José
name: Serna, Rosalia
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Nanocrystalline textured EuO thin films are prepared by an oxygen loss process from a pure Eu2O3 bulk ceramic target through pulsed laser deposition in vacuum at room temperature. X-ray diffraction spectra evidence a well-defined diffraction peak corresponding to the EuO phase textured along the (110) direction. Analysis of the XRD peak profile indicates that the films are nanocrystalline (average crystallite size of 11 nm) with a compressive residual strain. The formation of stoichiometric EuO is further confirmed by a strong signal from Eu2+ in the X-ray photoelectron spectra. The complex refractive index in the near infrared has been determined by spectroscopic ellipsometry and shows that the EuO films have a high transparency (k < 10-3) and a refractive index of 2.1. A band-gap shift of 0.25 eV is found with respect to the EuO bulk. These films, deposited by an accessible and efficient method, open a new route to produce EuO films with optical quality, suitable for NIR optoelectronic components.
Additional file 3 of Concepts of health in different contexts: a scoping review
Creators: name: van Druten, V. P.
name: Bartels, E. A.
name: van de Mheen, D.
name: de Vries, E.
name: Kerckhoffs, A. P. M.
name: Nahar-van Venrooij, L. M. W.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy

description: Additional file 3: Supplementary Table 3A. Overview of number of articles per subtheme for theme 1 (concept of health) for different perspectives. Supplementary Table 3B. Overview of number of articles per subtheme for theme 2 (dimensions of health) for different perspectives.