cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 5 of Definition of constitutive and stage-enriched promoters in the rodent malaria parasite, Plasmodium yoelii
Creators: name: Bowman, Laura M.
name: Finger, Logan E.
name: Hart, Kevin J.
name: Lindner, Scott E.
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional File 5: Integration of pylap4 promoter and GFPmut2 reporter into the p230p safe harbor locus of Plasmodium yoelii
Finite-time blowup for the inviscid vortex stretching equation
Creators: name: Miller, Evan
Publisher: name: arXiv
Year: 2022
Subjects: subject: Analysis of PDEs (math.AP)
subject: FOS: Mathematics
subject: 35Q31

description: In this paper, we will introduce the inviscid vortex stretching equation, which is a model equation for the 3D Euler equation where the advection of vorticity is neglected. We will show that there are smooth solutions of this equation which blowup in finite-time, even when restricting to axisymmetric, swirl-free solutions. This provides further evidence of the role of advection in depleting nonlinear vortex stretching for solutions of the 3D Euler equation.
Additional file 4 of Definition of constitutive and stage-enriched promoters in the rodent malaria parasite, Plasmodium yoelii
Creators: name: Bowman, Laura M.
name: Finger, Logan E.
name: Hart, Kevin J.
name: Lindner, Scott E.
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional File 4: Integration of pydd promoter and GFPmut2 reporter into the p230p safe harbor locus of Plasmodium yoelii
Bosonization, Painleve property, exact solutions for N=1 supersymmetric mKdV equation
Creators: name: Ren, Bo
name: Yang, Jian-Rong
name: Liu, Ping
name: Liu, Xi-Zhong
Publisher: name: arXiv
Year: 2014
Subjects: subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: FOS: Physical sciences

description: The N=1 supersymmetric modified Korteweg-de Vries (SmKdV) system is transformed to a system of coupled bosonic equations with the bosonization approach. The bosonized SmKdV (BSmKdV) passes the Painlevé test and allows a set of Bäcklund transformation (BT) by truncating the series expansions of the solutions about the singularity manifold. The traveling wave solutions of the BSmKdV system are obtained using the mapping and deformation method. Some special types of exact solutions for the BSmKdV system are found with the solutions and symmetries of the usual mKdV equation. In the meanwhile, the similarity reduction solutions of the system are investigated by using the Lie point symmetry theory. The generalized tanh function expansion method for the BSmKdV system leads to a nonauto-BT theorem. Using the nonauto-BT theorem, the novel exact explicit solutions of the BSmKdV system can be obtained. All these solutions obtained via the bosonization procedure are different from those obtained via other methods.
description: arXiv admin note: add the references in the manuscript
Additional file 3 of Definition of constitutive and stage-enriched promoters in the rodent malaria parasite, Plasmodium yoelii
Creators: name: Bowman, Laura M.
name: Finger, Logan E.
name: Hart, Kevin J.
name: Lindner, Scott E.
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional File 3: Integration of pyclag-a promoter and GFPmut2 reporter into the p230p safe harbor locus of Plasmodium yoelii
Maternal glucose levels and late pregnancy circulating extracellular vesicle and particle miRNAs in the MADRES pregnancy cohort
Creators: name: Anderson, Elizabeth C.
name: Foley, Helen B.
name: Levy, Joshua J.
name: Romano, Megan E.
name: Gui, Jiang
name: Bentz, Jessica L.
name: Maldonado, Luis E.
name: Farzan, Shohreh F.
name: Bastain, Theresa M.
name: Marsit, Carmen J.
name: Breton, Carrie V.
name: Howe, Caitlin G.
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology

description: Maternal hyperglycemia during pregnancy adversely affects maternal and child outcomes. While mechanisms are not fully understood, maternal circulating miRNAs may play a role. We examined whether continuous glucose levels and hyperglycemia subtypes (gestational diabetes, type 2 diabetes, and glucose intolerance) were associated with circulating miRNAs during late pregnancy. Seven miRNAs (hsa-miR-107, hsa-let-7b-5p, hsa-miR-126-3p, hsa-miR-181a-5p, hsa-miR-374a-5p, hsa-miR-382-5p, and hsa-miR-337-5p) were associated (p < 0.05) with either hyperglycemia or continuous glucose levels prior to multiple testing correction. These miRNAs target genes involved in pathways relevant to maternal and child health, including insulin signaling, placental development, energy balance, and appetite regulation.
Stimulated amplification of propagating spin waves
Creators: name: Breitbach, David
name: Schneider, Michael
name: Heinz, Björn
name: Kohl, Felix
name: Maskill, Jan
name: Scheuer, Laura
name: Serha, Rostyslav O.
name: Brächer, Thomas
name: Lägel, Bert
name: Dubs, Carsten
name: Tiberkevich, Vasil S.
name: Slavin, Andrei N.
name: Serga, Alexander A.
name: Hillebrands, Burkard
name: Chumak, Andrii V.
name: Pirro, Philipp
Publisher: name: arXiv
Year: 2022
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Applied Physics (physics.app-ph)
subject: FOS: Physical sciences

description: Spin-wave amplification techniques are key to the realization of magnon-based computing concepts. We introduce a novel mechanism to amplify spin waves in magnonic nanostructures. Using the technique of rapid cooling, we create a non-equilibrium state in excess of high-energy magnons and demonstrate the stimulated amplification of an externally seeded, propagating spin wave. Using an extended kinetic model, we qualitatively show that the amplification is mediated by an effective energy flux of high energy magnons into the low energy propagating mode, driven by a non-equilibrium magnon distribution.
Detection of Interacting Variables for Generalized Linear Models via Neural Networks
Creators: name: Havrylenko, Yevhen
name: Heger, Julia
Publisher: name: arXiv
Year: 2022
Subjects: subject: Machine Learning (stat.ML)
subject: Machine Learning (cs.LG)
subject: Applications (stat.AP)
subject: FOS: Computer and information sciences
subject: 62P05

description: The quality of generalized linear models (GLMs), frequently used by insurance companies, depends on the choice of interacting variables. The search for interactions is time-consuming, especially for data sets with a large number of variables, depends much on expert judgement of actuaries, and often relies on visual performance indicators. Therefore, we present an approach to automating the process of finding interactions that should be added to GLMs to improve their predictive power. Our approach relies on neural networks and a model-specific interaction detection method, which is computationally faster than the traditionally used methods like Friedman H-Statistic or SHAP values. In numerical studies, we provide the results of our approach on artificially generated data as well as open-source data.
description: 30 pages, 6 Figures
Gribov ambiguity and degenerate systems
Creators: name: Canfora, Fabrizio
name: de Micheli, Fiorenza
name: Salgado-Rebolledo, Patricio
name: Zanelli, Jorge
Publisher: name: arXiv
Year: 2014
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The relation between Gribov ambiguity and degeneracies in the symplectic structure of physical systems is analyzed. It is shown that, in finite-dimensional systems, the presence of Gribov ambiguities in regular constrained systems (those where the constraints are functionally independent) always leads to a degenerate symplectic structure upon Dirac reduction. The implications for the Gribov-Zwanziger approach to QCD are discussed.
description: 26 pages, 6 figures. Comments and references added
Additional file 2 of Definition of constitutive and stage-enriched promoters in the rodent malaria parasite, Plasmodium yoelii
Creators: name: Bowman, Laura M.
name: Finger, Logan E.
name: Hart, Kevin J.
name: Lindner, Scott E.
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional File 2: Promoter sequences used in this study
Ethical Decisions - Morton Thiokol and the Space Shuttle Challenger Disaster - Introduction
Publisher: name: Online Ethics Center
Year: 2006
Subjects: Employer/Employee Relationships
Lab and Workplace Safety
Catastrophes, Hazards, Disasters
Social Responsibility
Workplace Ethics

description: This essay provides a summary of important events leading to the Challenger disaster. Plus, a detailed account will show why the off-line telecon caucus by Morton Thiokol Management constituted the unethical decision-making forum which ultimately produced the management decision to launch Challenger without any restrictions.
Characterization of the numbers which satisfy the height reducing property
Creators: name: Akiyama, Shigeki
name: Thuswaldner, Jörg M.
name: Zaïmi, Toufik
Publisher: name: arXiv
Year: 2014
Subjects: subject: Number Theory (math.NT)
subject: FOS: Mathematics
subject: 11R06, 12D10, 11R04

description: Let $α$ be a complex number. We show that there is a finite subset $F$ of the ring of the rational integers $\mathbb{Z}$, such that $F\left[ α\right] =\mathbb{Z}\left[ α\right]$, if and only if $α$ is an algebraic number whose conjugates, over the field of the rationals, are all of modulus one, or all of modulus greater than one. This completes the answer to a question, on the numbers satisfying the height reducing property, posed in [3].
description: Indagationes Mathematicae (2014)
Fairness on Synthetic Visual and Thermal Mask Images
Creators: name: Lai, Kenneth
name: Shmerko, Vlad
name: Yanushkevich, Svetlana
Publisher: name: arXiv
Year: 2022
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: In this paper, we study performance and fairness on visual and thermal images and expand the assessment to masked synthetic images. Using the SpeakingFace and Thermal-Mask dataset, we propose a process to assess fairness on real images and show how the same process can be applied to synthetic images. The resulting process shows a demographic parity difference of 1.59 for random guessing and increases to 5.0 when the recognition performance increases to a precision and recall rate of 99.99\%. We indicate that inherently biased datasets can deeply impact the fairness of any biometric system. A primary cause of a biased dataset is the class imbalance due to the data collection process. To address imbalanced datasets, the classes with fewer samples can be augmented with synthetic images to generate a more balanced dataset resulting in less bias when training a machine learning system. For biometric-enabled systems, fairness is of critical importance, while the related concept of Equity, Diversity, and Inclusion (EDI) is well suited for the generalization of fairness in biometrics, in this paper, we focus on the 3 most common demographic groups age, gender, and ethnicity.
description: 6 pages, 3 figures
Additional file 1 of Definition of constitutive and stage-enriched promoters in the rodent malaria parasite, Plasmodium yoelii
Creators: name: Bowman, Laura M.
name: Finger, Logan E.
name: Hart, Kevin J.
name: Lindner, Scott E.
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional File 1: Oligonucleotides used in this study. Lower case letters indicate non-homologous bases added for cloning purposes
A Bayesian Joint Model for Compositional Mediation Effect Selection in Microbiome Data
Creators: name: Fu, Jingyan
name: Koslovsky, Matthew D.
name: Neophytou, Andreas M.
name: Vannucci, Marina
Publisher: name: arXiv
Year: 2022
Subjects: subject: Applications (stat.AP)
subject: Methodology (stat.ME)
subject: FOS: Computer and information sciences

description: Analyzing multivariate count data generated by high-throughput sequencing technology in microbiome research studies is challenging due to the high-dimensional and compositional structure of the data and overdispersion. In practice, researchers are often interested in investigating how the microbiome may mediate the relation between an assigned treatment and an observed phenotypic response. Existing approaches designed for compositional mediation analysis are unable to simultaneously determine the presence of direct effects, relative indirect effects, and overall indirect effects, while quantifying their uncertainty. We propose a formulation of a Bayesian joint model for compositional data that allows for the identification, estimation, and uncertainty quantification of various causal estimands in high-dimensional mediation analysis. We conduct simulation studies and compare our method's mediation effects selection performance with existing methods. Finally, we apply our method to a benchmark data set investigating the sub-therapeutic antibiotic treatment effect on body weight in early-life mice.
Radiative decays of radially excited pseudoscalar mesons in the extended Nambu--Jona-Lasinio model
Creators: name: Vishneva, A. V.
name: Volkov, M. K.
Publisher: name: arXiv
Year: 2013
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: In the extended NJL model the radiative decay widths of the radially excited states of the pseudoscalar $π$, $η$, and $η'$ mesons are calculated. The predictions for the decay widths of the processes $π(1300)\longrightarrow(ρ^0,ω)γ$, $η(1295)\longrightarrow(ρ^0,ω,ϕ)γ$, and $η(1475)\longrightarrow(ρ^0,ω,ϕ)γ$ are given. Nowadays, there are no solid experimental data for these processes. The comparison of the results obtained in the framework of the standard and the extended NJL models for decays of the ground states of mesons is given. It is shown that these calculations correspond to each other and are also in satisfactory agreement with experimental data. This allows one to expect that the extended NJL can give reliable predictions for the excited states of mesons.
description: 6 pages, 1 figure, 4 tables
Additional file 16 of Definition of constitutive and stage-enriched promoters in the rodent malaria parasite, Plasmodium yoelii
Creators: name: Bowman, Laura M.
name: Finger, Logan E.
name: Hart, Kevin J.
name: Lindner, Scott E.
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional File 16: Complete Live Fluorescence and IFA panels for pylisp2 promoter::GFPmut2 parasites. Panels provide signals attributed to GFP, stage-defining proteins (ACP, alpha-tubulin, CITH, and CSP), or DAPI. DIC images are also provided. Scale bar lengths are defined within each panel.
Classification of Fermionic Topological Orders from Congruence Representations
Creators: name: Cho, Gil Young
name: Kim, Hee-cheol
name: Seo, Donghae
name: You, Minyoung
Publisher: name: arXiv
Year: 2022
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The fusion rules and braiding statistics of anyons in $(2+1)$D fermionic topological orders are characterized by the modular data of a super-modular category. On the other hand, the modular data of a super-modular category form a congruence representation of the $Γ_θ$ subgroup of the modular group $\mathrm{SL}_2(\mathbb{Z})$. We provide a method to classify the modular data of super-modular categories by first obtaining the congruence representations of $Γ_θ$ and then building candidate modular data out of those representations. We carry out this classification up to rank $10$. We obtain both unitary and non-unitary modular data, including all previously known unitary modular data, and also discover new classes of modular data of rank $10$. We also determine the central charges of all these modular data, without explicitly computing their modular extensions.
description: 32 pages, 2 figures, 6 tables
Additional file 15 of Definition of constitutive and stage-enriched promoters in the rodent malaria parasite, Plasmodium yoelii
Creators: name: Bowman, Laura M.
name: Finger, Logan E.
name: Hart, Kevin J.
name: Lindner, Scott E.
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional File 15: Complete Live Fluorescence and IFA panels for pyuis4 promoter::GFPmut2 parasites. Panels provide signals attributed to GFP, stage-defining proteins (ACP, alpha-tubulin, CITH, and CSP), or DAPI. DIC images are also provided. Scale bar lengths are defined within each panel
Additional file 14 of Definition of constitutive and stage-enriched promoters in the rodent malaria parasite, Plasmodium yoelii
Creators: name: Bowman, Laura M.
name: Finger, Logan E.
name: Hart, Kevin J.
name: Lindner, Scott E.
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional File 14: Complete Live Fluorescence and IFA panels for pytrap promoter::GFPmut2 parasites. Panels provide signals attributed to GFP, stage-defining proteins (ACP, alpha-tubulin, CITH, and CSP), or DAPI. DIC images are also provided. Scale bar lengths are defined within each panel
Explaining the Ba, Y, Sr, and Eu abundance scatter in metal-poor halo stars: constraints to the r-process
Creators: name: Cescutti, Gabriele
name: Chiappini, Cristina
Publisher: name: arXiv
Year: 2014
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Context. Thanks to the heroic observational campaigns carried out in recent years we now have large samples of metal-poor stars for which measurements of detailed abundances exist. [...] These data hold important clues on the nature of the contribution of the first stellar generations to the enrichment of our Galaxy. Aims. We aim to explain the scatter in Sr, Ba, Y, and Eu abundance ratio diagrams unveiled by the metal-poor halo stars. Methods. We computed inhomogeneous chemical evolution models for the Galactic halo assuming different scenarios for the r-process site: the electron-capture supernovae (EC) and the magnetorotationally driven (MRD) supernovae scenario. We also considered models with and without the contribution of fast-rotating massive stars (spinstars) to an early enrichment by the s-process. A detailed comparison with the now large sample of stars with measured abundances of Sr, Ba, Y, Eu, and Fe is provided (both in terms of scatter plots and number distributions for several abundance ratios). Results. The scatter observed in these abundance ratios of the very metal-poor stars (with [Fe/H] < -2.5) can be explained by combining the s-process production in spinstars, and the r-process contribution coming from massive stars. For the r-process we have developed models for both the EC and the MRD scenario that match the observations. Conclusions. With the present observational and theoretical constraints we cannot distinguish between the EC and the MRD scenario in the Galactic halo. Independently of the r-process scenarios adopted, the production of elements by an s-process in spinstars is needed to reproduce the spread in abundances of the light neutron capture elements (Sr and Y) over heavy neutron capture elements (Ba and Eu). We provide a way to test our suggestions by means of the distribution of the Ba isotopic ratios in a [Ba/Fe] or [Sr/Ba] vs. [Fe/H] diagram.
description: 14 pages, 7 figures, accepted for publication in Astronomy and Astrophysics
Additional file 13 of Definition of constitutive and stage-enriched promoters in the rodent malaria parasite, Plasmodium yoelii
Creators: name: Bowman, Laura M.
name: Finger, Logan E.
name: Hart, Kevin J.
name: Lindner, Scott E.
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional File 13: Complete Live Fluorescence and IFA panels for pylap4 promoter::GFPmut2 parasites. Panels provide signals attributed to GFP, stage-defining proteins (ACP, alpha-tubulin, CITH, and CSP), or DAPI. DIC images are also provided. Scale bar lengths are defined within each panel
Additional file 12 of Definition of constitutive and stage-enriched promoters in the rodent malaria parasite, Plasmodium yoelii
Creators: name: Bowman, Laura M.
name: Finger, Logan E.
name: Hart, Kevin J.
name: Lindner, Scott E.
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional File 12: Complete Live Fluorescence and IFA panels for pydd promoter::GFPmut2 parasites. Panels provide signals attributed to GFP, stage-defining proteins (ACP, alpha-tubulin, CITH, and CSP), or DAPI. DIC images are also provided. Scale bar lengths are defined within each panel
The topology of compact rank-one ECS manifolds
Creators: name: Derdzinski, Andrzej
name: Terek, Ivo
Publisher: name: arXiv
Year: 2022
Subjects: subject: Differential Geometry (math.DG)
subject: FOS: Mathematics
subject: 53C50

description: Pseudo-Riemannian manifolds with parallel Weyl tensor that are not conformally flat or locally symmetric, also known as ECS manifolds, have a natural local invariant, the rank, which equals 1 or 2, and is the dimension of a certain distinguished null parallel distribution $\,\mathcal{D}$. All known examples of compact ECS manifolds are of rank one and have dimensions greater than 4. We prove that a compact rank-one ECS manifold, if not locally homogeneous, replaced when necessary by a two-fold isometric covering, must be a bundle over the circle with leaves of $\,\mathcal{D}^\perp$ serving as the fibres. The same conclusion holds in the locally-homogeneous case if one assumes that $\,\mathcal{D}^\perp$ has at least one compact leaf. We also show that in the pseudo-Riemannian universal covering space of any compact rank-one ECS manifold the leaves of $\,\mathcal{D}^\perp$ are the factor manifolds of a global product decomposition.
description: Some references updated
IP Eri: A surprising long-period binary system hosting a He white dwarf
Creators: name: Merle, T.
name: Jorissen, A.
name: Masseron, T.
name: Van Eck, S.
name: Siess, L.
name: Van Winckel, H.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We determine the orbital elements for the K0 IV + white dwarf (WD) system IP Eri, which appears to have a surprisingly long period of 1071 d and a significant eccentricity of 0.25. Previous spectroscopic analyses of the WD, based on a distance of 101 pc inferred from its Hipparcos parallax, yielded a mass of only 0.43 M$_\odot$, implying it to be a helium-core WD. The orbital properties of IP Eri are similar to those of the newly discovered long-period subdwarf B star (sdB) binaries, which involve stars with He-burning cores surrounded by extremely thin H envelopes, and are therefore close relatives to He WDs. We performed a spectroscopic analysis of high-resolution spectra from the HERMES/Mercator spectrograph and concluded that the atmospheric parameters of the K0 component are $T_{\rm eff} = 4960$ K, $\log{g} = 3.3$, [Fe/H] = 0.09 and $ξ= 1.5$ km/s. The detailed abundance analysis focuses on C, N, O abundances, carbon isotopic ratio, light (Na, Mg, Al, Si, Ca, Ti) and s-process (Sr, Y, Zr, Ba, La, Ce, Nd) elements. We conclude that IP Eri abundances agree with those of normal field stars of the same metallicity. The long period and non-null eccentricity indicate that this system cannot be the end product of a common-envelope phase; it calls instead for another less catastrophic binary-evolution channel presented in detail in a companion paper (Siess et al. 2014).
description: 14 pages, 10 figures, 4 tables, accepted for publication in A&A (Update of Table 3, Fig. 8 and text in Sect. 5.1, 5.3 and 6 due to minor corrections on N and Y II)
The MillenniumTNG Project: Semi-analytic galaxy formation models on the past lightcone
Creators: name: Barrera, Monica
name: Springel, Volker
name: White, Simon
name: Hernández-Aguayo, César
name: Hernquist, Lars
name: Frenk, Carlos
name: Pakmor, Rüdiger
name: Ferlito, Fulvio
name: Hadzhiyska, Boryana
name: Delgado, Ana Maria
name: Kannan, Rahul
name: Bose, Sownak
Publisher: name: arXiv
Year: 2022
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: Upcoming large galaxy surveys will subject the standard cosmological model, $Λ$CDM, to new precision tests. These can be tightened considerably if theoretical models of galaxy formation are available that can predict galaxy clustering and galaxy-galaxy lensing on the full range of measurable scales throughout volumes as large as those of the surveys and with sufficient flexibility that uncertain aspects of the underlying astrophysics can be marginalised over. This, in particular, requires mock galaxy catalogues in large cosmological volumes that can be directly compared to observation, and can be optimised empirically by Monte Carlo Markov Chains or other similar schemes to eliminate or estimate astrophysical parameters related to galaxy formation when constraining cosmology. Semi-analytic galaxy formation methods implemented on top of cosmological dark matter simulations offer a computationally efficient approach to construct physically based and flexibly parametrised galaxy formation models, and as such they are more potent than still faster, but purely empirical models. Here we introduce an updated methodology for the semi-analytic L-GALAXIES code, allowing it to be applied to simulations of the new MillenniumTNG project, producing galaxies directly on fully continuous past lightcones, potentially over the full sky, out to high redshift, and for all galaxies more massive than $\sim 10^8\,{\rm M}_\odot$. We investigate the numerical convergence of the resulting predictions, and study the projected galaxy clustering signals of different samples. The new methodology can be viewed as an important step towards more faithful forward-modelling of observational data, helping to reduce systematic distortions in the comparison of theory to observations.
description: 24 pages, 18 figures, published in MNRAS
Short random circuits define good quantum error correcting codes
Creators: name: Brown, Winton
name: Fawzi, Omar
Publisher: name: arXiv
Year: 2013
Subjects: subject: Quantum Physics (quant-ph)
subject: Information Theory (cs.IT)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences
subject: E.4; F.1.1

description: We study the encoding complexity for quantum error correcting codes with large rate and distance. We prove that random Clifford circuits with $O(n \log^2 n)$ gates can be used to encode $k$ qubits in $n$ qubits with a distance $d$ provided $\frac{k}{n} < 1 - \frac{d}{n} \log_2 3 - h(\frac{d}{n})$. In addition, we prove that such circuits typically have a depth of $O( \log^3 n)$.
description: 5 pages
In-medium antikaon and eta-meson interactions and bound states
Creators: name: Gal, Avraham
name: Friedman, Eli
name: Barnea, Nir
name: Cieplý, Aleš
name: Mareš, Jiří
name: Gazda, Daniel
Publisher: name: arXiv
Year: 2014
Subjects: subject: Nuclear Theory (nucl-th)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: The role played by subthreshold meson-baryon dynamics is demonstrated in kaonic-atom, Kbar-nuclear and eta-nuclear bound-state calculations within in-medium models of Kbar-N and eta-N interactions. New analyses of kaonic atom data reveal appreciable multi-nucleon contributions. Calculations of eta-nuclear bound states show, in particular, that the eta-N scattering length is not a useful indicator of whether or not eta mesons bind in nuclei nor of the widths anticipated for such states.
description: invited talk at the Second International Symposium on Mesic Nuclei, Cracow, Sept.22-24 2013, matches published version
Picosecond switching of high voltage reverse-biased p+-n-n+-structures into conductive state by pulsed lighting
Creators: name: Kyuregyan, A. S.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Other Condensed Matter (cond-mat.other)
subject: FOS: Physical sciences

description: An analytical theory of high voltage reverse-biased p+-n-n+-structures picosecond switching into conducting state by pulsed lighting has been developed and a numerical simulation of this process has been performed. Combining the results of theory and simulation allowed us to obtain a simple relation between the parameters of structure, light pulse, external circuit and main characteristics of the process - the load current pulse amplitude and duration of switching process.
description: 12 pages, 8 figures, in Russian
Dynamic melting and condensation of topological dislocation modes
Creators: name: Das, Sanjib Kumar
name: Roy, Bitan
Publisher: name: arXiv
Year: 2022
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Superconductivity (cond-mat.supr-con)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Bulk dislocation lattice defects are instrumental in identifying translationally active topological insulators (TATIs), featuring band inversion at a finite momentum (${\bf K}_{\rm inv}$). As such, TATIs host robust gapless modes around the dislocation core, when the associated Burgers vector ${\bf b}$ satisfies ${\bf K}_{\rm inv} \cdot {\bf b}=π$ (modulo $2 π$). From the time evolution of appropriate density matrices, we show that when a TATI via a real time ramp enters into a trivial or translationally inert topological insulating phase, devoid of gapless dislocation modes, the signatures of the preramp defect modes survive for a long time. More intriguingly, as the system ramps into a TATI phase from any translationally inert insulator, signature of the dislocation mode dynamically builds up near its core, which is prominent for slow ramps. We exemplify these generic outcomes for two-dimensional time-reversal symmetry breaking insulators. Proposed dynamic responses at the dislocation core can be experimentally observed in quantum crystals, optical lattices and metamaterials with time a tunable band gap.
description: Published version in PRB: 6 Pages, 4 Figures: Supplementary as Ancillary file
Estimates of the local spectral dimension of the Sierpinski gasket
Creators: name: Hino, Masanori
Publisher: name: arXiv
Year: 2022
Subjects: subject: Probability (math.PR)
subject: Mathematical Physics (math-ph)
subject: FOS: Mathematics
subject: FOS: Physical sciences
subject: Primary: 31E05, Secondary: 28A80, 31C25

description: We discuss quantitative estimates of the local spectral dimension of the two-dimensional Sierpinski gasket. The present arguments were inspired by a previous study of the distribution of the Kusuoka measure by R. Bell, C.-W. Ho, and R. S. Strichartz [Energy measures of harmonic functions on the Sierpiński gasket, Indiana Univ. Math. J. 63 (2014), 831-868].
description: 12 pages, 1 figure, minor revision
Additional file 11 of Definition of constitutive and stage-enriched promoters in the rodent malaria parasite, Plasmodium yoelii
Creators: name: Bowman, Laura M.
name: Finger, Logan E.
name: Hart, Kevin J.
name: Lindner, Scott E.
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional File 11: Complete Live Fluorescence and IFA panels for pyclag-a promoter::GFPmut2 parasites. Panels provide signals attributed to GFP, stage-defining proteins (ACP, alpha-tubulin, CITH, and CSP), or DAPI. DIC images are also provided. Scale bar lengths are defined within each panel.
Additional file 10 of Definition of constitutive and stage-enriched promoters in the rodent malaria parasite, Plasmodium yoelii
Creators: name: Bowman, Laura M.
name: Finger, Logan E.
name: Hart, Kevin J.
name: Lindner, Scott E.
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional File 10: Integration of a minimal, yet strong, pybip promoter and GFPmut2 reporter into the p230p safe harbor locus of Plasmodium yoelii.
Stability of Polarized States for Diamond Valleytronics
Creators: name: Hammersberg, Johan
name: Majdi, Saman
name: Kovi, Kiran Kumar
name: Suntornwipat, Nattakarn
name: Gabrysch, Markus
name: Twitchen, Daniel. J.
name: Isberg, Jan
Publisher: name: arXiv
Year: 2014
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The stability of valley polarized electron states is crucial for the development of valleytronics. A long relaxation time of the valley polarization is required to enable operations to be performed on the polarized states. Here we investigate the stability of valley polarized states in diamond, expressed as relaxation time. We have found that the stability of the states can be extremely long when we consider the symmetry determined electron-phonon scattering. By Time-of-Flight measurements and Monte Carlo simulations, we determine electron-phonon coupling constants and use these data in order to map out the relaxation time temperature dependency. The relaxation time can be microseconds or longer below 100K and 100 V/cm for diamond due to the strong covalent bond, which is highly encouraging for valleytronic applications.
Additional file 1 of An international multi-center investigation on the accuracy of radionuclide calibrators in nuclear medicine theragnostics
Creators: name: Vargas, Clarita Saldarriaga
name: Bauwens, Matthias
name: Pooters, Ivo N. A.
name: Pommé, Stefaan
name: Peters, Steffie M. B.
name: Segbers, Marcel
name: Jentzen, Walter
name: Vogg, Andreas
name: Velden, Floris H. P. Van
name: Viol, Sebastiaan L. Meyer
name: Gotthardt, Martin
name: Mottaghy, Felix M.
name: Wildberger, Joachim E.
name: Covens, Peter
name: Wierts, Roel
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Pharmacology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Cancer
subject: Hematology

description: Additional file 1. Supplemental data
Additional file 1 of Autistic traits are associated with the functional connectivity of between—but not within—attention systems in the general population
Creators: name: Yoshimura, Sayaka
name: Kobayashi, Kei
name: Ueno, Tsukasa
name: Miyagi, Takashi
name: Oishi, Naoya
name: Murai, Toshiya
name: Fujiwara, Hironobu
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1: Table S1. The two ROIs that exhibited significant relationships between AQ scores and FC values.
Spontaneously Broken Gauge Theories and the Coset Construction
Creators: name: Goon, Garrett
name: Joyce, Austin
name: Trodden, Mark
Publisher: name: arXiv
Year: 2014
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The methods of non-linear realizations have proven to be powerful in studying the low energy physics resulting from spontaneously broken internal and spacetime symmetries. In this paper, we reconsider how these techniques may be applied to the case of spontaneously broken gauge theories, concentrating on Yang-Mills theories. We find that coset methods faithfully reproduce the description of low energy physics in terms of massive gauge bosons and discover that the Stückelberg replacement commonly employed when treating massive gauge theories arises in a natural manner. Uses of the methods are considered in various contexts, including generalizations to $p$-form gauge fields. We briefly discuss potential applications of the techniques to theories of massive gravity and their possible interpretation as a Higgs phase of general relativity.
description: 28 pages. v2: added references
Additional file 1 of The Shamiri group intervention for adolescent anxiety and depression: study protocol for a randomized controlled trial of a lay-provider-delivered, school-based intervention in Kenya
Creators: name: Osborn, Tom L.
name: Venturo-Conerly, Katherine E.
name: Wasil, Akash R.
name: Rodriguez, Micaela
name: Roe, Elizabeth
name: Rediet Alemu
name: Susana Arango, G.
name: Gan, Jenny
name: Wasanga, Christine
name: Schleider, Jessica L.
name: Weisz, John R.
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Neuroscience
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1.
Inelastic p9Be scattering and halo-structure of excited states of 9Be
Creators: name: Ibraeva, E.
name: Zhusupov, M.
name: Dzhazairov-Kakhramanov, A.
name: Krassovitskiy, P.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: The calculation of the differential cross section of the inelastic p9Be scattering (to the levels J = 1/2, 3/2) was made in the framework of the Glauber diffraction theory. We used the wave function of 9Be in the ground and excited states in the three-body 2alpha-n model. Expansion in series by gaussoids of the wave function of 9Be and presentation of the Glauber operator in the form, conjugated with three-body wave function, allow us to calculate analytically the matrix elements of inelastic scattering, taking into account all of the multiplicities of scattering and rescattering on clusters and nucleon, that are the components of 9Be. The drawn up profiles of excited state functions allow us to make conclusion on their extended neutron distributions. The differential cross section with the wave function in model 1 (with the alpha-alpha-Ali-Bodmer potential) is in a good agreement with available experimental data at E = 180 MeV.
description: pdf, 17 pages, 11 figures
Configurations of a new atomic interferometer for gravitational wave detection
Creators: name: Tang, Biao
name: Zhang, Baocheng
name: Zhou, Lin
name: Wang, Jin
name: Zhan, Mingsheng
Publisher: name: arXiv
Year: 2013
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Recently, the configuration using atomic interferometers (AIs) had been suggested for the detection of gravitational waves. A new AI with some additional laser pulses for implementing large momentum transfer was also put forward, in order to improve the influence of shot noise and laser frequency noise. In the paper, we use the sensitivity function to analyze all possible configurations of the new AI and to distinguish how many momenta are transferred in a specific configuration. With the analysis for the new configuration, we explore the detection scheme of gravitational wave further, in particular, for the amelioration of the laser frequency noise. We find that the amelioration is definite in such scheme, but novelly, in some cases the frequency noise can be canceled completely by using a proper data processing method.
Investigation of low-lying energy spectra for deformed prolate nuclei via partial dynamical SU(3) symmetry
Creators: name: Fouladi, N.
name: Fouladi, J.
name: Sabri, H.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We consider the possibility of identifying nuclei exhibiting the partial dynamical SU(3) symmetry (SU(3)-PDS) as those having excitation energy ratio R(4/2)>3.00 . For this purpose, the level energy spectra of a set of 51 nuclei in the rare earth and actinide regions which presenting an axially deformed prolate rotational structure were analyzed via nuclear partial dynamical SU(3) symmetry in the framework of interacting boson model, to see if the SU(3)-PDS is broadly applicable, and where, how, and in which nuclei it breaks down. Overall, the PDS works very well, the predictions of such intermediate symmetry structure for energy spectrum were compared with the most recent experimental data and an acceptable degree of agreement is achieved. We conclude that PDS predictions have a more regular behavior in description of axially deformed prolate rotational nuclei than DS, which may lead to accurate predictions of such nuclei, and hence play a significant role in understanding the regular behavior of complex nuclei.
description: 18 pages, 5 figures. arXiv admin note: text overlap with arXiv:1210.8002; Discussion is modified and the quality of figures is improved
Transport through quasi-one-dimensional wires with correlated disorder
Creators: name: Herrera-Gonzalez, I. F.
name: Mendez-Bermudez, J. A.
name: Izrailev, F. M.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: We study transport properties of bulk-disordered quasi-one-dimensional (Q1D) wires paying main attention to the role of long-range correlations embedded into the disorder. First, we show that for stratified disorder for which the disorder is the same for all individual chains forming the Q1D wire, the transport properties can be analytically described provided the disorder is weak. When the disorder in every chain is not the same, however, has the same binary correlator, the general theory is absent. Thus, we consider the case when only one channel is open and all others are closed. For this situation we suggest a semi-analytical approach which is quite effective for the description of the total transmission coefficient. Our numerical data confirm the validity of our approach. Such Q1D disordered structures with anomalous transport properties can be the subject of an experimental study.
description: 9 pages, 5 figures
Going with the flow: enhancing stochastic switching rates in multi-gyre systems
Creators: name: Heckman, Christoffer R.
name: Hsieh, M. Ani
name: Schwartz, Ira B.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: A control strategy is employed that modifies the stochastic escape times from one basin of attraction to another in a model of a double-gyre flow. The system studied captures the behavior of a large class of fluid flows that circulate and have multiple almost invariant sets. In the presence of noise, a particle in one gyre may randomly switch to an adjacent gyre due to a rare large fluctuation. We show that large fluctuation theory may be applied for controlling autonomous agents in a stochastic environment, in fact leveraging the stochastic- ity to the advantage of switching between regions of interest and concluding that patterns may be broken or held over time as the result of noise. We demonstrate that a controller can effectively manipulate the probability of a large fluctuation, thereby modifying escape times exponentially; this demonstrates the potential of optimal control strategies that work in combination with the endemic stochastic environment. To demonstrate this, stochastic simulations and numerical continuation are employed to tie together experimental findings with predictions.
description: Final accepted version 8 pages, 5 figures
A Fast, robust algorithm for power line interference cancellation in neural recording
Creators: name: Keshtkaran, Mohammad Reza
name: Yang, Zhi
Publisher: name: arXiv
Year: 2014
Subjects: subject: Systems and Control (eess.SY)
subject: Medical Physics (physics.med-ph)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Physical sciences

description: Power line interference may severely corrupt neural recordings at 50/60 Hz and harmonic frequencies. In this paper, we present a robust and computationally efficient algorithm for removing power line interference from neural recordings. The algorithm includes four steps. First, an adaptive notch filter is used to estimate the fundamental frequency of the interference. Subsequently, based on the estimated frequency, harmonics are generated by using discrete-time oscillators, and then the amplitude and phase of each harmonic are estimated through using a modified recursive least squares algorithm. Finally, the estimated interference is subtracted from the recorded data. The algorithm does not require any reference signal, and can track the frequency, phase, and amplitude of each harmonic. When benchmarked with other popular approaches, our algorithm performs better in terms of noise immunity, convergence speed, and output signal-to-noise ratio (SNR). While minimally affecting the signal bands of interest, the algorithm consistently yields fast convergence and substantial interference rejection in different conditions of interference strengths (input SNR from -30 dB to 30 dB), power line frequencies (45-65 Hz), and phase and amplitude drifts. In addition, the algorithm features a straightforward parameter adjustment since the parameters are independent of the input SNR, input signal power, and the sampling rate. The proposed algorithm features a highly robust operation, fast adaptation to interference variations, significant SNR improvement, low computational complexity and memory requirement, and straightforward parameter adjustment. These features render the algorithm suitable for wearable and implantable sensor applications, where reliable and real-time cancellation of the interference is desired.
description: 18 pages, 21 figures, to appear in Journal of Neural Engineering
Additional file 3 of Assessment of the psychosocial and economic impact according to sex in non-small cell lung cancer patients: an exploratory longitudinal study
Creators: name: Viñolas, N. Nuria
name: Garcia-Campelo, Rosario
name: Majem, Margarita
name: Carcereny, Enric
name: Isla, Dolores
name: Gonzalez-Larriba, José Luis
name: Coves, Juan
name: De-Castro, Javier
name: Domine, Manuel
name: Piar Lianes
name: Artal, Angel
name: Remon, Jordi
name: Felip, Enriqueta
name: Garrido, Pilar
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 3. Online Resource 3: Caregiving burden (Zarit scale) by patient sex over time.