cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
title: 01_0213
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
Ultralow friction of ink-jet printed graphene flakes
Creators: name: Buzio, R.
name: Gerbi, A.
name: Uttiya, S.
name: Bernini, C.
name: Castillo, A. E. Del Rio
name: Palazon, F.
name: Siri, A. S.
name: Pellegrini, V.
name: Pellegrino, L.
name: Bonaccorso, F.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We report the frictional response of few-layer graphene (FLG) flakes obtained by liquid phase exfoliation (LPE) of pristine graphite. To this end, we inkjet print FLG on bare and hexamethyldisilazane-terminated SiO2 substrates, producing micrometric patterns with nanoscopic roughness that are investigated by atomic force microscopy. Normal force spectroscopy and atomically resolved morphologies indicate reduced surface contamination by solvents after a vacuum annealing procedure. Notably, the printed FLG flakes show ultralow friction comparable with micromechanically exfoliated graphene flakes. Lubricity is retained on flakes with lateral size of a few tens of nanometres, and with thickness as small as ~ 2 nm, confirming the high crystalline quality and low defects density in the FLG basal plane. Surface exposed step edges exhibit the highest friction values, representing preferential sites for originating secondary dissipative processes related to edge straining, wear or lateral displacement of the flakes. Our work demonstrates that LPE enables fundamental studies on graphene friction to the single-flake level. The capability to deliver ultralow-friction-graphene over technologically relevant substrates, using a scalable production route and a high-throughput, large-area printing technique, may also open up new opportunities in the lubrication of micro- and nano-electromechanical systems.
description: 31 pages, 18 figures,
Oecophylla smaragdina
Creators: name: Forel, A.
Publisher: name: Zenodo
Year: 1894
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Oecophylla
Oecophylla smaragdina

description: Oe. smaragdina (Fab.) Formica macra et sonata, Guerin.
Ce genre ne renferme en Inde qu'une espece tres commune, l´ Oe. smaragdina, Fab. (the red Ant) dont M. Aitken a si bien decrit les moeurs dans ce journal. L'espece a les caracteres du genre. La [[queen]], grande et grosse, de couleur vert clair, a 13 a 16 mill, de long. Le [[male]] est noir, grele, beaucoup plus petit, long de 6 a 6, 5 mill. seulement. L'ouvriere est d'un rouge jaunatre et varie de 3, 5 a 9, 5 mill. M. Andre a decrit les plus petites ouvrieres d'une forme africaine tres voisine sous le nom de Oe. brevinodis. Elles ont toujours le pedicule, les pattes et les antennes beaucoup plus courtes que les graudes [[worker]] relativement au corps. C'est le contraire des autres fourmis. M. Wroughton m'a envoye une fourmiliere commencante comprenant la mere fondatrice, 9 petites [[worker]] de la plus petite sorte et (quelques nymphes. Le nid etait file dans l'interstice d'une feuille, comme celui d'une Polyrhachis. Les nids de 1 ' Oecophylla, tisses d'une trame de soie blanche qui relie les feuilles des arbres, sont tres considerables et bien connus dans les tropiques. L´ Oecophylla smaragdina est repandue dans toute l'Inde, de l'Himalaya a Ceylan et do Bombay a Calcutta. Je l'ai meme recue do Dehra Dun, Nordouest do l'Himalaya, a 2300 ' d' elevation, par M. Wood-Mason.
description: Published as part of Forel, A., 1894, Les formicides de l'Empire des Indes et de Ceylan. Part IV. Adjonction aux genres Camponotus, Mayr., et Polyrhachis, Shuck., pp. 396-420 in Journal of the Bombay Natural History Society 8 on page 400
One-Instanton Test of a Seiberg-Witten Curve from M-theory: the Antisymmetric Representation of SU(N)
Creators: name: Naculich, Stephen G.
name: Rhedin, Henric
name: Schnitzer, Howard J.
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: One-instanton predictions are obtained from the Seiberg-Witten curve derived from M-theory by Landsteiner and Lopez for the Coulomb branch of N=2 supersymmetric SU(N) gauge theory with a matter hypermultiplet in the antisymmetric representation. Since this cubic curve describes a Riemann surface that is non-hyperelliptic, a systematic perturbation expansion about a hyperelliptic curve is developed, with a comparable expansion for the Seiberg-Witten differential. Calculation of the period integrals of the SW differential by the method of residues of D'Hoker, Krichever, and Phong enables us to compute the prepotential explicitly to one-instanton order. It is shown that the one-instanton predictions for SU(2), SU(3), and SU(4) agree with previously available results. For SU(N), N > 4, our analysis provides explicit predictions of a curve derived from M-theory at the one-instanton level in field theory.
description: 37 pages, latex, no figures
HFM-generation
Creators: name: Yang, Lin
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 339999
subject: Other built environment and design not elsewhere classified
classificationCode: 330409
subject: Transport planning
classificationCode: 330401
subject: Community planning

description: Intra-community roads refer to interior (or private) paths in communities dominated by residential buildings, which are essential for the navigation in communities. However, they are very scarce in existing urban road networks. Focusing on the widely available low-frequency trajectories, this paper proposes a human-flow modeling (HFM) method to model trajectory as flow for extracting intra-community roads. By translating the different density distribution of people’s trajectories in residential areas into road probability field, the human flow semantics that underlie the trajectories are represented as flow features. A human-flow digital elevation model (HDEM) is constructed based on such features. The main roads and fine branches embedded in the HDEM are simultaneously extracted via hydrological analysis.
Epg5 links proteotoxic stress due to defective autophagic clearance and epileptogenesis in Drosophila and Vici syndrome patients
Creators: name: Deneubourg, Celine
name: Dafsari, Hormos Salimi
name: Lowe, Simon
name: Martinez-Cotrina, Aitana
name: Mazaud, David
name: Park, Seo Hyun
name: Vergani, Virginia
name: Barbanoj, Amanda Almacellas
name: Maroofian, Reza
name: Averdunk, Luisa
name: Ghayoor-Karimiani, Ehsan
name: Jayawant, Sandeep
name: Mignot, Cyril
name: Keren, Boris
name: Peters, Renate
name: Kamath, Arveen
name: Mattas, Lauren
name: Verma, Sumit
name: Silwal, Arpana
name: Distelmaier, Felix
name: Houlden, Henry
name: Lignani, Gabriele
name: Antebi, Adam
name: Jepson, James
name: Jungbluth, Heinz
name: Fanto, Manolis
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Science Policy
subject: Mental Health

description: Epilepsy is a common neurological condition that arises from dysfunctional neuronal circuit control due to either acquired or innate disorders. Autophagy is an essential neuronal housekeeping mechanism, which causes severe proteotoxic stress when impaired. Autophagy impairment has been associated to epileptogenesis through a variety of molecular mechanisms. Vici Syndrome (VS) is the paradigmatic congenital autophagy disorder in humans due to recessive variants in the ectopic P-granules autophagy tethering factor 5 (EPG5) gene that is crucial for autophagosome-lysosome fusion and autophagic clearance. Here, we used Drosophila melanogaster to study the importance of Epg5 in development, aging, and seizures. Our data indicate that proteotoxic stress due to impaired autophagic clearance and seizure-like behaviors correlate and are commonly regulated, suggesting that seizures occur as a direct consequence of proteotoxic stress and age-dependent neurodegenerative progression. We provide complementary evidence from EPG5-mutated patients demonstrating an epilepsy phenotype consistent with Drosophila predictions. Abbreviations: AD: Alzheimer's disease; ALS-FTD: Amyotrophic Lateral Sclerosis-FrontoTemoporal Dementia; DART: Drosophila Arousal Tracking; ECoG: electrocorticogram; EEG: electroencephalogram; EPG5: ectopic P-granules 5 autophagy tethering factor; KA: kainic acid; MBs: mushroom bodies; MRI magnetic resonance imaging; MTOR: mechanistic target of rapamycin kinase; PD: Parkinson's disease; TSC: TSC complex; VS: Vici syndrome
HFM-generation
Creators: name: Kwan, Mei-Po
name: Yang, Lin
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 339999
subject: Other built environment and design not elsewhere classified
classificationCode: 330409
subject: Transport planning
classificationCode: 330401
subject: Community planning

description: Intra-community roads refer to interior (or private) paths in communities dominated by residential buildings, which are essential for the navigation in communities. However, they are very scarce in existing urban road networks. Focusing on the widely available low-frequency trajectories, this paper proposes a human-flow modeling (HFM) method to model trajectory as flow for extracting intra-community roads. By translating the different density distribution of people’s trajectories in residential areas into road probability field, the human flow semantics that underlie the trajectories are represented as flow features. A human-flow digital elevation model (HDEM) is constructed based on such features. The main roads and fine branches embedded in the HDEM are simultaneously extracted via hydrological analysis.
On the Behavior of F2 and its Logarithmic Slopes
Creators: name: Kaidalov, A. B.
name: Merino, C.
name: Pertermann, D.
Publisher: name: arXiv
Year: 2000
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: It is shown that the CKMT model for the nucleon structure function F2, taken as the initial condition for the NLO evolution equations in perturbative QCD, provides a good description of the HERA data when presented in the form of the logarithmic slopes of F2 vs x and Q2 (Caldwell-plot), in the whole available kinematic ranges. Also the results obtained for the behavior of the gluon component of a nucleon are presented.
description: 16 pages, 10 figures
Reflections, applications and future directions of Long-Term Ecological Research at Tierberg§
Creators: name: Arena, Gina
name: Merwe, Helga Van Der
name: Todd, Simon W
name: Pauw, Marco J
name: Milton, Suzanne J
name: W Richard J Dean
name: Joh R Henschel
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Tierberg-LTER is a research site established in 1987 in the semi-arid Succulent Karoo near Prince Albert in the Western Cape province, South Africa. The original purpose for its establishment was to study ecosystem dynamics and the drivers of vegetation in the context of historical land use. The large body of work that has materialised from Tierberg-LTER is grounded on extensive baseline data and has greatly influenced the broader Karoo literature. It stands as the only long-term ecological research facility for the semi-arid region of South Africa. The Karoo environment faces several new developments centred largely on the expanding energy sector. Under a changing climate, ecosystems will have to further adapt to the impacts of such developments. The future research programme for Tierberg-LTER will accordingly continue to focus on understanding Karoo ecosystem dynamics and drivers of climate and anthropogenic change at local scales, thereby informing management and mitigation of future development impacts. Among a growing network of Karoo research sites, Tierberg-LTER maintains a unique role for long-term and intensive research that will contribute significantly towards the South African Environmental Observation Network’s vision of furthering ecosystem integrity, societal prosperity and sustainable development.
title: Édition TEI de la pièce Ploutos d’Aristophane (Ve siècle avant J.-C.), traduite par André Charles Brotier (1751- 1798), 1789
title: Edition in TEI format of the play Ploutos by Aristophanes (5th century BC), translated by André Charles Brotier (1751- 1798), 1789
Creators: name: Bastin-Hammou, Malika
name: Mandhouj, Nassim
name: Aristophane (C. 446 – C. 386 BC)
name: André Charles Brotier (Traducteur)
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2024
Subjects: subject: TEI
subject: Traduction
subject: Aristophane
subject: 18e siècle
subject: Français (langue)
subject: TEI
subject: translation
subject: Aristophanes
subject: 18th century
subject: french
subject: Theater–Greece
subject: 18th century
subject: French language

description: This edition is part of the Translatoscope project at Grenoble Alpes University, dedicated to the study of the history of translations of Aristophanes. The text has been encoded in accordance with the recommendations of the Text Encoding Initiative (http://www.tei-c.org/Guidelines/P5/).
description: La présente édition s’inscrit dans le cadre du projet Translatoscope de l'Université Grenoble Alpes, dédié à l'étude de l’histoire des traductions d’Aristophane. L’encodage du texte a été réalisé en suivant les recommandations de la Text Encoding Initiative (http://www.tei-c.org/Guidelines/P5/).
description: date: 18th century
Mass and CKM Matrices of Quarks and Leptons, the Leptonic CP-phase in neutrino oscillations
Creators: name: Ter-Martirosyan, K. A.
name: Ryzhikh, D. A.
Publisher: name: arXiv
Year: 1999
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: A general approach for construction of quark and lepton mass matrices is formulated. The hierarchy of quarks and charged leptons ("electrons") is large, it leads using the experimental values of mixing angles to the hierarchical mass matrix slightly deviating from one's suggested earlier by Stech and including naturally the CP-phase. The same method based on the rotation of generation numbers in the diagonal mass matrix is used in the electron-neutrino sector of theory, where neutrino mass matrix is determined by the Majorano see-saw approach. The hierarchy of neutrino masses, much smaller than for quarks, was used including all existing (even preliminary) experimental data on neutrinos mixing. The leptonic mass matrix found in this way includes not known value of the leptonic CP-phase. It leads to a large $ν_μν_τ$ oscillations and suppresses the $ν_eν_τ$ and also $ν_e ν_μ$ oscillations. The explicit expressions for the probabilities of neutrino oscillation were obtained in order to specify the role of leptonic CP-phase. The value of time reversal effect (proportional to $\sinδ'$) was found to be small $\sim 1%$. However, a dependence of the values of $ν_e ν_μ, ν_e ν_τ$ transition probabilities, averaged over oscillations, on the leptonic CP-phase has found to be not small - of order of tens percent.
description: 21 pages, 2 figures, some corrections
Aharonov-Bohm Order Parameters for Non-Abelian Gauge Theories
Creators: name: Lo, Hoi-Kwong
Publisher: name: arXiv
Year: 1995
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: High Energy Physics - Lattice (hep-lat)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The Aharonov-Bohm effect has been invoked to probe the phase structure of a gauge theory. Yet in the case of non-Abelian gauge theories, it proves difficult to formulate a general procedure that unambiguously specifies the realization of the gauge symmetry, e.g. the unbroken subgroup. In this paper, we propose a set of order parameters that will do the job. We articulate the fact that any useful Aharonov-Bohm experiment necessarily proceeds in two stages: calibration and measurement. World sheets of virtual cosmic string loops can wrap around test charges, thus changing their states relative to other charges in the universe. Consequently, repeated flux measurements with test charges will not necessarily agree. This was the main stumbling block to previous attempts to construct order parameters for non-Abelian gauge theories. In those works, the particles that one uses for calibration and subsequent measurement are stored in {\em separate} ``boxes''. By storing all test particles in the {\em same} ``box'', we show how quantum fluctuations can be overcome. The importance of gauge fixing is also emphasized.
description: How quantum fluctuations destroy the coherence between various strings are discussed explicitly. That linked Wilson loops are useful order parameters for a Maxwell- Chern-Simons-Higgs theory is noted. The generality of our results is emphasized. Problems with figures have also been fixed. 43 pages, 13 figures, Revtex, accepted for publication in PRD
Resonant scattering effect on the soft X-ray line emission from the hot interstellar medium: I. galactic bulges
Creators: name: Chen, Yang
name: Wang, Q. Daniel
name: Zhang, Gao-Yuan
name: Zhang, Shuinai
name: Ji, Li
Publisher: name: arXiv
Year: 2018
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Diffuse soft X-ray line emission is commonly used to trace the thermal and chemical properties of the hot interstellar medium, as well as its content, in nearby galaxies. Although resonant line scattering complicates the interpretation of the emission, it also offers an opportunity to measure the kinematics of the medium. We have implemented a direct Monte Carlo simulation scheme that enables us to account for resonant scattering effect in the medium, in principle, with arbitrary spatial, thermal, chemical, and kinematic distributions. Here we apply this scheme via dimensionless calculation to an isothermal, chemically uniform, and spherically symmetric medium with a radial density distribution characterized by a $β$-model. This application simultaneously account for both optical depth-dependent spatial distortion and intensity change of the resonant line emission due to the scattering, consistent with previous calculations. We further apply the modeling scheme to the OVII and OVIII emission line complex observed in the XMM-Newton RGS spectrum of the M31 bulge. This modeling, though with various limitations due to its simplicity, shows that the resonant scattering could indeed account for much of the spatial distortion of the emission, as well as the relative strengths of the lines, especially the large forbidden to resonant line ratio of the OVII He$α$ triplet. We estimate the isotropic turbulence Mach number of the medium in M31 as $\sim0.17$ for the first time and the line-emitting gas temperature as $\sim2.3\times10^6$ K. We conclude that the resonant scattering may in general play an important role in shaping the soft X-ray spectra of diffuse hot gas in normal galaxies.
description: emulateapj, 14 pages including 13 figures, accepted by ApJ
UPLC-MS/MS screening method for simultaneous identification and characterisation of acidic and basic pharmaceuticals
Creators: name: Kafeenah, Husam I.S.
name: Rozita Osman
name: Nor K. Abu Bakar
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Pharmacology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Inorganic Chemistry

description: A new screening method was developed for the simultaneous determination of seven acidic and basic pharmaceuticals by the ultra-high performance liquid chromatography-tandem mass spectrometry (UPLC-MS/MS) utilising triple quadrupole mass spectrometry as a detector. The target pharmaceutical compounds of interest in this work belong to different classes of pharmaceutical group with different physico-chemical properties. Both the positive and negative ionisation modes (dual ionisation mode) in electrospray ionisation (ESI) were used simultaneously. Unlike previous studies, the performance of the dual ionisation mode was compared with the positive and negative ionisation modes individually in terms of analysis time and sensitivity. Results indicate that the developed screening method was successfully applied for the simultaneous determination of the acidic and basic pharmaceutical compounds. Using dual ionisation mode reduced the analyses time while still maintaining sensitivity and quality of the analytical result. The new method was implemented in detecting the targeted analyte in a real sample of wastewater. The instrument detection limit (IDL) was as low as 9.7 fg, indicating a high sensitivity as compared to the corresponding methods. The precision of the instrument was calculated as the relative standard deviation (RSD) ranging from 1.4 to 11.0%. The limit of quantification (LOQ) for the method was over the range 0.77–177 ng L−1 and 1.05–100 ng L−1 for the influent and effluent wastewater, respectively.
Formica fusca var. gagates
Creators: name: Forel, A.
Publisher: name: Zenodo
Year: 1894
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Formica
Formica fusca
F. fusca, l. race f. gagates

description: 3. F. fusca, L. Race F. gagates (Latr.)
= F. picea (Nyl.) = F. glabra (W. White). = F. candida (Smith).
Lahoul, frontiere du Thibet (Major Sage), Thibet (par M. Wroughton). Identique aux individus europeens. Yarkand (Smith). La F. candida Smith est evidemment une F. gagates. Race F. fusca, i. sp., L. = F. glebaria, Nyl. Mussoric Hills (M. Smythies). Pachmarhi pres de Jubulpore, Inde centrale (M. Schurr). Indentique aux individus europeens. Race F. rufibarbis (Fab.) = F. cunicularia (Latr.) = F. obsoleta (Latr.) = F. stenoptera (Foerst.) = F. fraterna et F. defensor (Smith?) Dharmsala (Major Sage). Lahoul, frontiere du Thibet (Major Sage), Identique aux exemplaies europeens. La F. fraterna (Smith) est evidemment la F. rufibarbis. La F. defensor (Smith) est peut-etre la vari t suivante.
description: Published as part of Forel, A., 1894, Les formicides de l'Empire des Indes et de Ceylan. Part IV. Adjonction aux genres Camponotus, Mayr., et Polyrhachis, Shuck., pp. 396-420 in Journal of the Bombay Natural History Society 8 on page 403
FABind+: Enhancing Molecular Docking through Improved Pocket Prediction and Pose Generation
Creators: name: Gao, Kaiyuan
name: Pei, Qizhi
name: Zhang, Gongbo
name: Zhu, Jinhua
name: He, Kun
name: Wu, Lijun
Publisher: name: arXiv
Year: 2024
Subjects: subject: Biomolecules (q-bio.BM)
subject: Artificial Intelligence (cs.AI)
subject: Machine Learning (cs.LG)
subject: FOS: Biological sciences
subject: FOS: Computer and information sciences

description: Molecular docking is a pivotal process in drug discovery. While traditional techniques rely on extensive sampling and simulation governed by physical principles, these methods are often slow and costly. The advent of deep learning-based approaches has shown significant promise, offering increases in both accuracy and efficiency. Building upon the foundational work of FABind, a model designed with a focus on speed and accuracy, we present FABind+, an enhanced iteration that largely boosts the performance of its predecessor. We identify pocket prediction as a critical bottleneck in molecular docking and propose a novel methodology that significantly refines pocket prediction, thereby streamlining the docking process. Furthermore, we introduce modifications to the docking module to enhance its pose generation capabilities. In an effort to bridge the gap with conventional sampling/generative methods, we incorporate a simple yet effective sampling technique coupled with a confidence model, requiring only minor adjustments to the regression framework of FABind. Experimental results and analysis reveal that FABind+ remarkably outperforms the original FABind, achieves competitive state-of-the-art performance, and delivers insightful modeling strategies. This demonstrates FABind+ represents a substantial step forward in molecular docking and drug discovery. Our code is in https://github.com/QizhiPei/FABind.
description: Accepted for presentation at KDD 2025
Myrmecocystus viaticus subsp. setipes Forel, 1894, n. st.
Creators: name: Forel, A.
Publisher: name: Zenodo
Year: 1894
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Myrmecocystus
Myrmecocystus viaticus
M. viaticus, fab., r. setipes

description: 1. M. viaticus, Fab., r. setipes, n. st.
La seule espece de ce genre connue jusqu'ici en Inde est une simple race du M. viaticus, Fab., de la faune mediterraneenne. Elle vit surtout dans les terrains secs, dans les steppes, court sur ses longues jambes en relevant 1 ' abdomen et fait la chasse aux insectes. Elle a la tete et le thorax d'un rouge tres sombre, l'abdomen noir luisant et varie do 7 a 13 millimetres de longueur. Les caracteres sont du reste coux du genre. J'ai recu cette espece de Nusseerabad dans la Rajpootana (M. Glardon), de Rai Bareli (M. Simpson) et de Pachmarhi, a 3558 pieds do hauteur, pres de Jubulpore, dans 1 ' Inde centrale (M. Schurr). C'est un des representants typiques de la fauno palearctique de l´Inde et je crois qu'il est limite au Nord-ouest et au centre de la peninsule.
[[worker]]. Differe du M. viaticus, i. sp., par sa taille un peu plus svelte, ses pattes plus longues (les pattes posterieures sont de 1 a 3 millimetres plus longues a grandeur egale du corps) et surtout par le caractere suivant: les pattes sont couvertes sur toutes leurs faces de soies couchees, epaisses, courtes, d'un noir brunatre; la face interne des tibias n'a que des piquants obliques et les soies do lours autres faces sont aussi longues et aussi epaisses que ces piquants. Chez tous les M. viaticus, i. sp., de la faune mediterraneenne, de meme que chez les M. altisquamis, M. niger et M. megalocola, les pattes n'ont qu'une pubescence adjacente ordinaire, roussatre, pou epaisse, non setiforme, tout a fait distincte des piquants roussatres de la face interne des tibias. Ces demiers sont drosses.
La couleur du M. setipes est la meme que colle des exemplaires du M. viaticus i. sp. que j'ai recoltes dans les oasis a Gabes (Tunisie), et que ceux qu'on recoit en general de la region du desert saharien. Un exemplaire que j'ai recu d'Abyssinie (Harar) par M. Ilg est aussi le viaticus, i. sp., et non le M. setipes. Les exemplaires tout-a-fait typiques d'Espagne, de Hongrie, de Bulgarie, de Grece, etc., sont d'un rouge plus vif et ont le noeud souvent plus court et plus eleve. Leurs pattes sont plus courtes que celles de la variete rouge tres fonce du desert qu'on pourrait appeler M. desertorum, n. v. Ils sont par contre d'un rouge bien moins vif que la race M. megalocola, sont bien plus grands qu'elle et ont l'abdomen mat.
description: Published as part of Forel, A., 1894, Les formicides de l'Empire des Indes et de Ceylan. Part IV. Adjonction aux genres Camponotus, Mayr., et Polyrhachis, Shuck., pp. 396-420 in Journal of the Bombay Natural History Society 8 on pages 401-402
Four-point functions of 1/2-BPS operators of any weights in the supergravity approximation
Creators: name: Arutyunov, Gleb
name: Klabbers, Rob
name: Savin, Sergei
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We present the computation of all the correlators of 1/2-BPS operators in $\mathcal{N} = 4$ SYM with weights up to 8 as well as some very high-weight correlation functions from the effective supergravity action. The computation is done by implementing the recently developed simplified algorithm in combination with the harmonic polynomial formalism. We provide a database of these results attached to this publication and additionally check for almost all of the functions in this database that they agree with the conjecture on their Mellin-space form.
description: 6 pages, database included; v2: database extended, appendix added
Computation of Pommaret Bases Using Syzygies
Creators: name: Binaei, Bentolhoda
name: Hashemi, Amir
name: Seiler, Werner M.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Algebraic Geometry (math.AG)
subject: Symbolic Computation (cs.SC)
subject: Commutative Algebra (math.AC)
subject: FOS: Mathematics
subject: FOS: Computer and information sciences

description: We investigate the application of syzygies for efficiently computing (finite) Pommaret bases. For this purpose, we first describe a non-trivial variant of Gerdt's algorithm to construct an involutive basis for the input ideal as well as an involutive basis for the syzygy module of the output basis. Then we apply this new algorithm in the context of Seiler's method to transform a given ideal into quasi stable position to ensure the existence of a finite Pommaret basis. This new approach allows us to avoid superfluous reductions in the iterative computation of Janet bases required by this method. We conclude the paper by proposing an involutive variant of the signature based algorithm of Gao et al. to compute simultaneously a Grobner basis for a given ideal and for the syzygy module of the input basis. All the presented algorithms have been implemented in Maple and their performance is evaluated via a set of benchmark ideals.
description: Computer Algebra in Scientific Computing (CASC 2018), Lille, France, 2018
Solenopsis punctaticeps var. caffra Forel, 1894, n. var.
Creators: name: Forel, A.
Publisher: name: Zenodo
Year: 1894
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Solenopsis
Solenopsis punctaticeps
Solenopsis punctaticeps mayr, v. caffra
Solenopsis punctaticeps, var. caffra

description: Solenopsis punctaticeps Mayr, v. caffra, n. var.
Aus Transvaal (Rev. P. Berthoud) und aus der DelagoaBay (Dr. Liengme) habe ich eine Solenopsis [[worker]] und [[queen]] erhalten, deren [[worker]] hellgelb sind und zwischen 1,4 und 3,2 mm. variiren, waehrend das [[queen]], mit langen, kaum gelblich angehauchten Fluegeln, blassen Rippen und Randmal, kastanienbraun ist und 4,5 bis 5 mm. misst. Das Thier ist robuster als fugax; der Kopf des [[queen]] ist relativ etwas breiter. Mein Freund Professor Mayr hatte die Guete, diese Art mit seinen Typen der punctaticeps zu vergleichen und fand sie nur etwas groesser, mit laengeren Haaren am Scheitel. Von Mayr's Beschreibung, d. h. von S. fugax weichen aber diese Thiere noch durch das hoehere, kuerzere Metanotum, durch die breiteren Stielchenknoten, durch die noch kleineren, winzigen Augen, den breiteren Kopf etc. ab.
Ich will sie als Solenopsis punctaticeps, var. caffra, n. var., bezeichnen.
Die Exemplare aus Delogoa haben schwache Beulen (oder ein Laengseindruck) am Metanotum und etwas groessere Augen. Die [[worker]] major sind auch vorne dunkler.
Bei dieser Gelegenheit muss ich erklaeren, dass das [[queen]] dieser Solenopsis mit der Beschreibung der S. capensis ([[queen]]) Mayr merkwuerdig uebereinstimmt, soweit die ganz kurze, ungenuegende Beschreibung Mayr's dieses zu erkennen erlaubt. Ich vermuthe daher, dass S. capensis nur das [[queen]] von S. punctaticeps ist.
Ferner hat Prof. Mayr Exemplare der Solenopsis punctaticeps aus Brasilien erhalten und mir ein Typus derselben s. Z. geschickt, welche jedoch nach meiner Ansicht gar nicht zu dieser Art gehoeren, d. h. eine ganz andere Art sind. Sic sind schlanker, dunkler (braeunlichgelb) gefaerbt, haben sehr deutliche, groessere Netzaugen mit mehreren Facetten, ein niedriges und flaches Metanotum mit langer basaler und ganz kurzer abschuessiger Flaeche (bei punctaticeps ist das Metanotum hoch und die. abschuessige Flaeche fast laenger als die basale). Der Clypeus ist vorne weniger, vorgezogen und hat duennere Zaehne. Das erste Stielchenglied ist mehr konisch und oben viel schmaeler, gerundet, waehrend es bei punctaticeps oben sehr breit, mit fast geradlinigem Oberrand ist. Auch ist die eingestochene Punktirung der afrikanischen Art viel groeber. Ich schlage vor, die brasilianische Art Solenopsis Westwoodi n. sp. zu nennen. Offenbar kommen bei derselben die grossen [[worker]] der afrikanischen Art nicht vor. Der Typus, den ich besitze, misst ca. 1,4 mm.
description: Published as part of Forel, A., 1894, Abessinische und andere afrikanische Ameisen, gesammelt von Herrn Ingenieur Alfred Ilg, von Herrn Dr. Liengme, von Herrn Pfarrer Missionar P. Berthoud, Herrn Dr. Arth. Müller, etc., pp. 64-100 in Mitteilungen der Schweizerischen Entomologischen Gesellschaft 9 on pages 99-100, DOI: 10.5281/zenodo.14259
ByzRev 03.2021.019: Shaun Tougher, The Roman Castrati. Eunuchs in the Roman Empire.
Creators: name: Michel, Christian
Publisher: name: The Byzantine Review
Year: 2021

description: Shaun Tougher, The Roman Castrati. Eunuchs in the Roman Empire. London – New York: Bloomsbury Academic 2021. X, 222 S. – ISBN: 978-1-3501-6404-8 (£ 76.50)
description: The Byzantine Review, Bd. 3 (2021)
The neurovascular unit in diffuse intrinsic pontine gliomas
Creators: name: El-Khouly, Fatma E.
name: Haumann, Rianne
name: Breur, Marjolein
name: Veldhuijzen Van Zanten, Sophie E.M.
name: Kaspers, Gertjan J.L.
name: Hendrikse, N. Harry
name: Hulleman, Esther
name: Van Vuurden, Dannis G.
name: Bugiani, Marianna
Publisher: name: Free Neuropathology
Year: 2021

description: Aims: Diffuse intrinsic pontine glioma (DIPG) is a childhood brainstem tumor with a median overall survival of eleven months. Lack of chemotherapy efficacy may be related to an intact blood-brain barrier (BBB). In this study we aim to investigate the neurovascular unit (NVU) in DIPG patients. Methods: DIPG biopsy (n = 4) and autopsy samples (n = 6) and age-matched healthy pons samples (n = 20) were immunohistochemically investigated for plasma protein extravasation, and the expression of tight junction proteins claudin-5 and zonula occludens-1 (ZO-1), basement membrane component laminin, pericyte marker PDGFR-β, and efflux transporters P-gp and BCRP. The mean vascular density and diameter were also assessed. Results: DIPGs show a heterogeneity in cell morphology and evidence of BBB leakage. Both in tumor biopsy and autopsy samples, expression of claudin-5, ZO-1, laminin, PDGFR-β and P-gp was reduced compared to healthy pontine tissues. In DIPG autopsy samples, vascular density was lower compared to healthy pons. The density of small vessels (<10 µm) was significantly lower (P<0.001), whereas the density of large vessels (≥10 µm) did not differ between groups (P = 0.404). The median vascular diameter was not significantly different: 6.21 µm in DIPG autopsy samples (range 2.25-94.85 µm), and 6.26 µm in controls (range 1.17-264.77 µm). Conclusion: Our study demonstrates evidence of structural changes in the NVU in DIPG patients, both in biopsy and autopsy samples, as well as a reduced vascular density in end-stage disease. Adding such a biological perspective may help to better direct future treatment choices for DIPG patients.
description: Free Neuropathology, Bd. 2 (2021)
Serine ubiquitination of SQSTM1 regulates NFE2L2-dependent redox homeostasis
Creators: name: Mukherjee, Rukmini
name: Bhattacharya, Anshu
name: Mello-Vieira, João
name: Kuncha, Santosh Kumar
name: Hoffmann, Marina
name: Gonzalez, Alexis
name: Rathore, Rajeshwari
name: Chadha, Attinder
name: Shin, Donghyuk
name: Colby, Thomas
name: Matic, Ivan
name: Mukherjee, Shaeri
name: Misra, Mohit
name: Dikic, Ivan
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: The KEAP1-NFE2L2 axis is essential for the cellular response against metabolic and oxidative stress. KEAP1 is an adaptor protein of CUL3 (cullin 3) ubiquitin ligase that controls the cellular levels of NFE2L2, a critical transcription factor of several cytoprotective genes. Oxidative stress, defective autophagy and pathogenic infections activate NFE2L2 signaling through phosphorylation of the autophagy receptor protein SQSTM1, which competes with NFE2L2 for binding to KEAP1. Here we show that phosphoribosyl-linked serine ubiquitination of SQSTM1 catalyzed by SidE effectors of Legionella pneumophila controls NFE2L2 signaling and cell metabolism upon Legionella infection. Serine ubiquitination of SQSTM1 sterically blocks its binding to KEAP1, resulting in NFE2L2 ubiquitination and degradation. This reduces NFE2L2-dependent antioxidant synthesis in the early phase of infection. Levels of serine ubiquitinated SQSTM1 diminish in the later stage of infection allowing the expression of NFE2L2-target genes; causing a differential regulation of the host metabolome and proteome in a NFE2L2-dependent manner. Abbreviation: ARE: antioxidant response element; Dup: deubiquitinase specific for phosphoribosyl-linked serine ubiquitination; ER: endoplasmic reticulum; h.p.i: hours post infection; HIF1A/HIF-1α: hypoxia inducible factor 1 subunit alpha; KEAP1: kelch like ECH associated protein 1; KIR: KEAP1-interacting region; LIR: LC3-interacting region; NES: nuclear export signal; NFKB/NF-κB: nuclear factor kappa B; NLS: nuclear localization signal; NFE2L2/Nrf2: NFE2 like bZIP transcription factor 2; PB1 domain: Phox1 and Bem1 domain; PR-Ub: phosphoribosyl-linked serine ubiquitination; ROS: reactive oxygen species; SQSTM1/p62: sequestosome 1; tBHQ: tertiary butylhydroquinone; TUBE2: tandem ubiquitiin binding entity 2; UBA domain: ubiquitin-associated domain.
Optimization of a fast rotating target to produce kHz X-ray pulses from laser-plasma interaction
Creators: name: Martín, Lucia
name: Benlliure, José
name: Cortina, Dolores
name: Llerena, Juan
name: González, David
name: Ruiz, Camilo
Publisher: name: arXiv
Year: 2018
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: We report the development of a fast rotating target to produce ultrashort incoherent X-ray pulses from bremsstrahlung. These short X-ray pulses are produced in the laser-plasma interaction of a 35 fs, 1 mJ pulse of a Ti:Sa laser of 1 kHz repetition rate, with a solid metallic target. In this paper, we report our developments to improve the stability of this micron size source of ultrashort X-rays. As the Rayleigh length is very small (<15 micron), wobbling of the rotatory stage can reduce the intensity on target and change the characteristics of the source. We describe the methods we have developed to measure and adjust the stability of the focus on target. These advances are important for the development of sources with high average power and good stability. The X-ray source has a broad Maxwellian-like distribution with temperatures of around 10 - 40 KeV and could be used for advanced X-ray imaging such as absorption or phase contrast tomography.
description: Conference proceeding
Additional file 2 of Mitochondrial analysis of oribatid mites provides insights into their atypical tRNA annotation, genome rearrangement and evolution
Creators: name: Zhan, Xue-Bing
name: Chen, Bing
name: Fang, Yu
name: Dong, Fang-Yuan
name: Fang, Wei-Xi
name: Luo, Qian
name: Chu, Ling-Miao
name: Feng, Rui
name: Wang, Yan
name: Su, Xuan
name: Fang, Ying
name: Xu, Jiao-Yang
name: Zuo, Ze-Tao
name: Xia, Xing-Quan
name: Yu, Jie-Gen
name: Sun, En-Tao
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2: Table S2. Partition schemes used in the present study (DOCX 16 KB)
Two Skyrmion Dynamics with Omega Mesons
Creators: name: Amado, R. D.
name: Halasz, M. A.
name: Protopapas, P.
Publisher: name: arXiv
Year: 1999
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We present our first results of numerical simulations of two skyrmion dynamics using an $ω$-meson stabilized effective Lagrangian. We consider skyrmion-skyrmion scattering with a fixed initial velocity of $β=0.5$, for various impact parameters and groomings. The physical picture that emerges is surprisingly rich, while consistent with previous results and general conservation laws. We find meson radiation, skyrmion scattering out of the scattering plane, orbiting and capture to bound states.
description: 19 pages, 22 figures
The Three-point Function in Split Dimensional Regularization in the Coulomb Gauge
Creators: name: Leibbrandt, G.
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We use a gauge-invariant regularization procedure, called ``split dimensional regularization'', to evaluate the quark self-energy $Σ(p)$ and quark-quark-gluon vertex function $Λ_μ(p^\prime,p)$ in the Coulomb gauge, $\vec{\bigtriangledown}\cdot\vec{A}^a = 0$. The technique of split dimensional regularization was designed to regulate Coulomb-gauge Feynman integrals in non-Abelian theories. The technique which is based on two complex regulating parameters, $ω$ and $σ$, is shown to generate a well-defined set of Coulomb-gauge integrals. A major component of this project deals with the evaluation of four-propagator and five-propagator Coulomb integrals, some of which are nonlocal. It is further argued that the standard one-loop BRST identity relating $Σ$ and $Λ_μ$, should by rights be replaced by a more general BRST identity which contains two additional contributions from ghost vertex diagrams. Despite the appearance of nonlocal Coulomb integrals, both $Σ$ and $Λ_μ$ are local functions which satisfy the appropriate BRST identity. Application of split dimensional regularization to two-loop energy integrals is briefly discussed.
description: Latex, 17 pages, 4 figures, uses epsf.sty, epsfig.sty; to appear in Nuc. Phys. B
Top quark decays with flavor violation in the B-LSSM
Creators: name: Yang, Jin-Lei
name: Feng, Tai-Fu
name: Zhang, Hai-Bin
name: Ning, Guo-Zhu
name: Yang, Xiu-Yi
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The decays of top quark $t\rightarrow cγ,\;t\rightarrow cg,\;t\rightarrow cZ,\;t\rightarrow ch$ are extremely rare processes in the standard model (SM). The predictions on the corresponding branching ratios in the SM are too small to be detected in the future, hence any measurable signal for the processes at the LHC is a smoking gun for new physics. In the extension of minimal supersymmetric standard model with an additional local $U(1)_{B-L}$ gauge symmetry (B-LSSM), new gauge interaction and new flavor changing interaction affect the theoretical evaluations on corresponding branching ratios of those processes. In this work, we analyze those processes in the B-LSSM, under a minimal flavor violating assumption for the soft breaking terms. Considering the constraints from updated experimental data, the numerical results imply $Br(t\rightarrow cγ)\sim5\times10^{-7}$, $Br(t\rightarrow cg)\sim2\times10^{-6}$, $Br(t\rightarrow cZ)\sim4\times10^{-7}$ and $Br(t\rightarrow ch)\sim3\times10^{-9}$ in our chosen parameter space. Simultaneously, new gauge coupling constants $g_{_B},\;g_{_{YB}}$ in the B-LSSM can also affect the numerical results of $Br(t\rightarrow cγ,\;cg,\;cZ,\;ch)$.
description: 20 pages, 4 figures, published in EPJC. arXiv admin note: substantial text overlap with arXiv:1803.09904
The census of the non-recycled radio pulsar population with MeerKAT - new constraints on the radio emission process from the time-averaged pulse profiles
Creators: name: Posselt, Bettina
Publisher: name: Zenodo
Year: 2024

description: The overwhelming majority of the known neutron star population are detected radio pulsars. The physics of the radio emission process and the alteration of the radio emission along the travel path to the observer still pose many open questions. For instance, which radio properties correlate and / or connect with distinct neutron star populations and what is the physical underpinning explanation for this? How do its radio properties change as a pulsar gets older?  Although there is a great number of radio-detected pulsars, only the brightest could be investigated in detail in the past. Our knowledge about radio pulsars was also limited by inhomogeneous observational sensitivity and frequency coverage. The high sensitivity and large frequency bandwidth of the MeerKAT radio telescope enabled the Thousand-Pulsar-Array (TPA) project to gather an unprecedented large homogeneous and comprehensive data set from non-recycled radio pulsars. 

I will present our homogeneous TPA measurements, e.g., fluxes, spectral indices, pulse widths, and polarisation fractions from the census of time-averaged pulsar data for more than 1000 pulsars. Highlighting our new statistical constraints on the relations between the measured pulse profile quantities and pulsar properties such as the spin-down energy, I will discuss interpretations with respect to the pulsar radio emission process.