cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Masked Superstrings for Efficient k-Mer Set Representation and Indexing
Creators: name: Sladký, Ondřej
Publisher: name: Zenodo
Year: 2024
Subjects: algorithms
bioinformatics
computational genomics
data structures
k-mer sets
shortest superstring problem

description: The exponential growth of genomic data calls for novel space-efficient algorithms for compression and search. State-of-the-art approaches often rely on tokenization of the data into k-mers, which are substrings of a fixed length. The popularity of k-mer based methods has led to the development of compact textual k-mer set representations, however, these rely on structural assumptions about the data which may not hold in practice. In this thesis, we demonstrate that all these representations can be viewed as superstrings of the k-mers, and as such can be generalized into a unified framework that we call the masked superstrings of k-mers. We provide two different greedy heuristics for their computation and implement them in a tool called KmerCamel🐫. We further demonstrate that masked superstrings can serve as a building block of a novel, simple k-mer set index which we call FMS-index. Additionally, if masked superstrings further integrate a demasking function f, the resulting f-masked superstrings framework allows for seamless set operations with k-mers. We experimentally evaluate the performance of masked superstrings, as well as of our FMS-index implementation,  FMSI, and show that masked superstrings achieve better compression in situations where the previous methods were far from optima. Furthermore, we demostrate that using FMS-index leads to memory savings compared to state-of-the-art indexing methods. Overall, our results demonstrate the usefulness of masked superstrings as a unified theoretical framework as well as their potential in designing data  structures for k-mers.
Quality assurance of actuators for the Medium-Sized Telescopes of the Cherenkov Telescope Array
Creators: name: Salzmann, Heiko
name: Dick, Jürgen
name: Diebold, Sebastian
name: Pühlhofer, Gerd
name: Renner, Siegbert
name: Santangelo, Andrea
name: Project, CTA MST
Publisher: name: arXiv
Year: 2024
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: The Cherenkov Telescope Array (CTA) is a future ground-based observatory for gamma-ray astronomy providing unparalleled sensitivity in the energy range from 20 GeV up to 300 TeV. CTA will consist of telescopes with three different sizes. The Medium-Sized Telescopes (MSTs) will have 12 m reflectors with a tessellated mirror design of 86 mirror facets each. Each mirror facet is mounted on the mirror support structure with two actuators that are adjustable in length to align the mirrors, and a freely rotating fixpoint. Image resolution and pointing accuracy constraints impose limits on the backlash and deformation of the actuators and the fixpoint under various weight and wind loads. In this contribution, the test stand to measure the backlash and deformation behaviour of actuators and fixpoints is described and the measurement procedure is explained.
description: 7 pages, 5 figures. Accepted as Proceeding of the 7th Heidelberg International Symposium on High-Energy Gamma-Ray Astronomy (Gamma2022)
Chimarra bicornis Cartwright 2020, sp. nov.
Creators: name: Cartwright, David
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Trichoptera
Philopotamidae
Chimarra
Chimarra bicornis

description: Chimarra bicornis sp. nov.
Figures 91–93
Holotype. Male (figured specimen CT-364), PNG (Morobe Province), Wau, Big Wau Creek, 1300 m, about 7° 20' S, 146° 43' E, November 1965, P. Shanahan (BPBM).
Diagnosis. Chimarra bicornis is similar to C. ulmeri but different to all other New Guinea Chimarra species in having a pair of sclerotised, curved dorsal and ventral branches of the lateral lobes on segment X. In C. ulmeri, the apices of the dorsal or upper branch of the lateral lobes are directed dorsally (Kimmins, 1962: fig. 16A; Neboiss, 1986a: fig. p. 106) or posterodorsally (fig. 90), whereas in C. bicornis, they are directed dorso-laterally. (There is also a species from northern Australia with a similar pair of curved mesal processes on segment X – C. adaluma Cartwright [Cartwright, 2002]).
Description. General body colour and wings brownish. Wings similar to those of C. ukarumpana (fig. 7). Length of forewing: male 5.9 mm. Forewing with forks 1, 2, 3 and 5 present, Rs slightly sinuous or curved, slightly thickened, basad of discoidal cell.
Male. Segment IX anterior margin in lateral view, with rounded extension anteroventrally (fig. 91), ventral process small, sub-triangular, situated basally on segment IX (figs 91, 92), in lateral view, length about 0.6 times width (fig. 91). Segment X lateral lobes sclerotised, short, slender, with dorsal and ventral branches, dorsal branch directed dorso-laterally, ventral branch directed ventro-posteriorly, with sensilla not discerned (figs 91, 93). Phallus with two slender spines included subapically (figs 92, 93). Inferior appendages short, robust, acute apices angled dorso-mesally (figs 91–93), in lateral view, angled at about 45° to horizontal, subquadrate, length about 2.5 times width, broadest in distal half, tapered slightly basally (fig. 91), in ventral view, appear sub-ovate, length about 2.8 times width (fig. 92).
Female. Unknown.
Etymology. Bicornis – Latin for two horned, two pronged (paired curved, dorsal branches of lateral lobes on segment X).
Remarks. Chimarra bicornis is known only from the holotype male in north-east PNG.
description: Published as part of Cartwright, David, 2020, A review of the New Guinea species of Chimarra Stephens (Trichoptera: Philopotamidae), pp. 1-49 in Memoirs of Museum Victoria 79 on pages 30-31, DOI: 10.24199/j.mmv.2020.79.01, http://zenodo.org/record/8065297
MOESM1 of Meta-barcoding in combination with palynological inference is a potent diagnostic marker for honey floral composition
Creators: name: Laha, Rama
name: Surajit Mandal
name: Lalhmanghai Ralte
name: Laldinfeli Ralte
name: Nachimuthu Kumar
name: Guruswami Gurusubramanian
name: Satishkumar, Ramalingam
name: Mugasimangalam, Raja
name: Nagesh Kuravadi
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 1: Table S1. Palynological analysis of the honey samples.
Iridomyrmex iniquus , Mayr
Creators: name: Forel, A.
Publisher: name: Zenodo
Year: 1893
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Iridomyrmex
Iridomyrmex iniquus

description: Iridomyrmex iniquus, Mayr. (No. 56 a).
[[worker]]. Exemplaires assez grands (2, 3 mill.), se rapprochant un peu du dispertitus, Forel. La tete des I. humilis et dispertitus est fortement elargie derriere, et ces deux especes ont une pubescence distincte, tandis que chez l´ iniquus la tete est retrecie a l'occiput, a peine plus large derriere que devant, L´ iniquus est plus luisant, a peine pubescent et plus petit. Malgre tout, ces formos sont peu constantes; la forme du mesonotum et du metanotum varie. Le dispertitus n'est guere qu'une race intermediaire entre l´ iniquus et l´ humilis, race qui a plus ou moins la forme du thorax de l´ iniquus, tandis qu'elle a la-taille, la pubescence et la forme de la tete de l´ humilis.
(56). A rare species; found thus far only in the forest.
(56 a). Upper Richmond Valley, 1500 ft. Nov. 28 th. A good many workers were found near a stream in the thick forest, under rubbish and rotting fruit on the sand by the water, and under sod on rocks. No nest could be found.
description: Published as part of Forel, A., 1893, Formicides de l'Antille St. Vincent. Récoltées par Mons. H. H. Smith., pp. 333-418 in Transactions of the Entomological Society of London 1893 on page 351
Temnopis megacephala
Creators: name: Ferreira, Gabriel Dos Santos
name: Ferreira, André Da Silva
name: Bravo, Freddy
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Temnopis
Temnopis megacephala

description: Temnopis megacephala (Germar, 1823)
Distribution. BRAZIL (Rio Grande do Norte, Ceará, Sergipe, Bahia, Goiás, Minas Gerais, Espírito Santo, Rio de Janeiro, S„o Paulo, Paraná, Santa Catarina, and Rio Grande do Sul), PARAGUAY, and ARGENTINA (Misiones).
Material examined. 2 specimens, BRAZIL: “ BAHIA: Cavungê, Rancho Alto da Boa Vista, 12°15′54,1″S / 38°58′29,4″W, 21.x.2017, Lima, D.M. & Moura, P.G. leg.” (MZFS); 1 specimen: “ Cavungê, Rancho Alto da Boa Vista, 12°15′54,1″S 38°58′29,4″W, Armadilha luminosa, 26.i.2020, Lima, D.M. leg” (MZFS); 2 specimens: “ Cavungê, Rancho Alto da Boa Vista, 12°15′54,1″S / 38°58′29,4″W, Armadilha luminosa, 27–28.iii.2020, Lima, D.M. leg.” (MZFS); 1 specimen:“ Cavungê, Rancho Alto da Boa Vista, 12°15′54,1″S / 38°58′29,4″W, 11–12.xii.2017, Lima, D.M. leg.” (MZFS).
description: Published as part of Ferreira, Gabriel Dos Santos, Ferreira, André Da Silva & Bravo, Freddy, 2023, Annotated checklist of Cerambycidae (Coleoptera: Chrysomeloidea) from the Brazilian semi-arid region, with new species and new geographic records, pp. 1-81 in Zootaxa 5235 (1) on page 42, DOI: 10.11646/zootaxa.5235.1.1, http://zenodo.org/record/7610305
Chimarra sinuosa Kimmins 1962
Creators: name: Cartwright, David
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Trichoptera
Philopotamidae
Chimarra
Chimarra sinuosa

description: Chimarra sinuosa Kimmins, 1962
Figure 94
Chimarra sinuosa Kimmins, 1962: 118; figs 21, 22.—Neboiss, 1986: 105.
Type material not seen. Holotype. Male. Indonesia, Papua Province, Cyclops Mountains, Sabron, Camp 2, 2000 ft (about 610 m), July 1936, L.E. Cheesman (BMNH).
Material examined. Indonesia. 1 male (dried, pinned specimen CT-381 partly figured), Papua Province, Hollandia area, Sentani, 90 m, about 2° 36' S, 140° 37' E, Malaise trap over stream, 15–18 June 1959, collector unknown (Gressitt or Maa?; BPBM).
Diagnosis. The males of C. sinuosa are similar to C. bifida in the sinusoidal shape of the inferior appendages, and to C. kewabi in the shape of the lateral lobes of segment X, with two subapical projections (sensillae?) in lateral view. C. sinuosa can be separated from C. bifida and C. kewabi and all other New Guinea species by the combination of these two characters and inferior appendages with simple, acute, inflexed apices.
Description. (Revised after Kimmins, 1962). General body colour and wings light brownish. Wings (Kimmins, 1962: fig. 21), similar to those of C. ukarumpana (fig. 7). Length of forewing: male 4.7 mm (Kimmins, 1962: p. 118). Forewing with forks 1, 2, 3 and 5 present, Rs slightly sinuous or curved, moderately thickened, basad of discoidal cell (Kimmins, 1962: fig. 21); hind wing with forks 1, 2, 3 and 5 present.
Male. Segment IX anterior margin in lateral view, anteroventrally broadly rounded (fig. 94), ventral process short triangular (Kimmins, 1962: fig. 22A), basal to distal margin of segment IX, in lateral view, length about 0.6 times basal width (fig. 94), preanal appendages ovate. Segment X lateral lobes with two subapical projections (sensilla?; fig. 94, Kimmins, 1962: figs 22A, B), in lateral view, lateral lobes robust, broadest in basal half, narrowed in distal half. Phallus without any obvious included spines. Inferior appendages slender, broadest basally, with acute apices directed posteromesally (fig. 94, Kimmins, 1962: figs 22A, B), in lateral view angled at about 45° to horizontal, slightly tapering in basal half, almost uniformly narrow and sinusously curved in apical half (fig. 94), in dorsal view, mesal and lateral margins curved (Kimmins, 1962: figs 22B, C; Neboiss, 1986a: fig. p. 105).
Female. Unknown.
Remarks. Chimarra sinuosa is known only from two male specimens from two localities in the north-east of West Papua. A new figure has been drawn to allow direct comparisons and to accompany the description that is revised in light of new interpretations of Chimarra genitalic structures from Kimmins’ (1962) original description.
description: Published as part of Cartwright, David, 2020, A review of the New Guinea species of Chimarra Stephens (Trichoptera: Philopotamidae), pp. 1-49 in Memoirs of Museum Victoria 79 on page 31, DOI: 10.24199/j.mmv.2020.79.01, http://zenodo.org/record/8065297
Additional file 9: Figure S7. of A high-quality annotated transcriptome of swine peripheral blood
Creators: name: Haibo Liu
name: Smith, Timothy
name: Nonneman, Dan
name: Dekkers, Jack
name: Tuggle, Christopher
Publisher: name: Figshare
Year: 2017
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Schematic summary of BLAST2GO mapping and annotation. (A) Distribution of source databases based on which GO terms were mapped to PTs in the integrated transcriptome assembly; (B) Distribution of the number of GO terms mapped to PTs of the integrated transcriptome assembly; (C) Distribution of evidence codes of the annotated GO terms mapped to PTs of the integrated transcriptome assembly; (D) Distribution of the number of GO terms mapped to PTs of the integrated transcriptome assembly; (E) Distribution of GO terms at different levels of the hierarchy of GO terms; (F) Distribution of annotation scores of GO terms. (PDF 110Â kb)
Temnopis rubricollis Martins, Galileo
Creators: name: Ferreira, Gabriel Dos Santos
name: Ferreira, André Da Silva
name: Bravo, Freddy
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Temnopis
Temnopis rubricollis

description: Temnopis rubricollis Martins, Galileo & Limeira-de-Oliveira, 2009
Distribution. BRAZIL (Maranh„o and Piauí).
description: Published as part of Ferreira, Gabriel Dos Santos, Ferreira, André Da Silva & Bravo, Freddy, 2023, Annotated checklist of Cerambycidae (Coleoptera: Chrysomeloidea) from the Brazilian semi-arid region, with new species and new geographic records, pp. 1-81 in Zootaxa 5235 (1) on page 42, DOI: 10.11646/zootaxa.5235.1.1, http://zenodo.org/record/7610305
Dorymyrmex pyramicus , Roger
Creators: name: Forel, A.
Publisher: name: Zenodo
Year: 1893
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Dorymyrmex
Dorymyrmex pyramicus

description: Dorymyrmex pyramicus, Roger
(No. 52 a a 52 e). [[worker]] et [[male]].
(52). Pretty common on the windward side, and near the southern end of the island; above the seashore, or on slopes near it. Rarely on the leeward side. The formicarium is generally in sandy soil, where the sand is supported by roots of grass, & c. It is without shelter, opening on the surface of the ground ' by a small perpendicular tunnel; about this there is generally a small mound of loose sand, & c, not over an inch high, and four inches in diameter. The nest proper is about a foot below the surface, and probably goes deeper, as I have not yet obtained the female; it appears to consist of a few passages, not more than half an inch in diameter, horizontal, or nearly so, and without larger chambers. In these passages I have found larvae and males with the workers. The communities apparently are small, having, one or two hundred workers; but several tunnels are generally found near each other, and these may belong to a common, larger, and deeper nest. The workers and males are active; the latter do not fly when the nest is opened, so far as I have observed. Workers are sometimes found on bushes near the seashore.
(52 a). Near Brighton Estate (southern end of the island). Nov. 17 th. Dry hill-sides, below 300 ft., overlooking flats by the sea; in roads, scrubby growth, rather hard ground; at the mouths of perpendicular tunnels..
(52 b). Not noted; apparently an immature specimen of this species.
(52 c). Leeward; seashore thickets at Wallibou. Oct. 8 th. Beaten from bushes.
(52 d). Windward; seashore, at back of the open sands; Grand Sable Estate. Jan. 3 rd. From two nests in sandy ground, supported by roots.
(52 e). Sandy, open valley of the Dry River; windward, near the sea. Jan. 2 nd. From several nests, as described above.
description: Published as part of Forel, A., 1893, Formicides de l'Antille St. Vincent. Récoltées par Mons. H. H. Smith., pp. 333-418 in Transactions of the Entomological Society of London 1893 on page 352
Additional file 1: Figure S1. of Changes in the food environment over time: examining 40 years of data in the Framingham Heart Study
Creators: name: James, Peter
name: Seward, Michael
name: A. James O’Malley
name: SV Subramanian
name: Block, Jason
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: Science Policy
subject: Computational Biology

description: Participant Flow Chart. Figure S2. Distance from Closest Establishment from Home. Figure S3. Counts of Establishments in 1500 m Buffer around Home. Figure S4. Distance from Closest Establishment from Work. Figure S5. Counts of Establishments in 1500 m Buffer around Workplace. Figure S6. Counts of Establishments in 60 m Buffer around Commute from Workplace to Home. Figure S7. Predicted value of mean distance from workplace to a) closest fast-food and b) closest supermarket stratified by workplace Census tract poverty. Table S1. NAICS Codes Used to Categorize Food Establishments. Table S2. Main Results for Multilevel Models Examining Food Environments over Time based on the Home Address. Table S3. Main Results for Multilevel Models Examining Food Environments over Time based on the Workplace Address. Table S4. Main Results for Multilevel Models Examining Food Environments over Time based on the Commute from Work to Home (DOCX 50 kb)
(Old Version) Offensive Language Detection: A Comparative Study of Classical and Transformer-Based Approaches on Imbalanced Twitter Data
Creators: name: Ishikawa, Takehiro
Publisher: name: Zenodo
Year: 2025

description: This is an old version. The latest version is available at https://doi.org/10.5281/zenodo.14643089.

Abstract

This study tackles the automatic detection of harmful comments and cyberbullying on social media, focusing on the “tdavidson/hate_speech_offensive” dataset of 24,783 English tweets. Each tweet was originally annotated with hate speech, offensive language, or neither; for this project, hate speech and offensive language were combined into a single “offensive” class, with all other content labeled as “non-offensive.” Because the dataset contains far more offensive (20,608) than non-offensive (4,158) tweets, class-weight balancing and oversampling via ADASYN were employed. Transformer-based models (BERT, RoBERTa, and an 8-bit quantized LlamaForSequenceClassification) fine-tuned via LoRA and hyperparameter-optimized with Optuna achieved 96% accuracy on Twitter test data but misclassified over 40% of samples in a separate dataset of 100 everyday usage examples. In comparison, TF-IDF-based models including Naive Bayes, Logistic Regression, SVM, and XGBoost achieved up to 94% accuracy on Twitter data but showed better generalization, correctly classifying over 70% of the everyday usage samples. I concluded that this performance disparity primarily stems from transformer models overfitting to Twitter-specific patterns and the inherent limitations of smaller model sizes in contextual understanding, while classical keyword-based approaches like TF-IDF prove more effective at identifying explicit offensive language by directly leveraging the presence of offensive words as classification features. For future work, expanding the training data to incorporate diverse language styles beyond Twitter would enhance model generalization. Furthermore, fine-tuning larger language models with tens or hundreds of billions of parameters could leverage their superior contextual comprehension capabilities, potentially leading to more robust and reliable offensive language detection systems.

Code.zip

Contains the source code for all models and experiments, including:

A BERT baseline (fine-tuned via LoRA and hyperparameter-optimized with Optuna)

RoBERTa Large (fine-tuned via LoRA and hyperparameter-optimized with Optuna)

LlamaForSequenceClassification (8-bit quantized, fine-tuned via LoRA and hyperparameter-optimized with Optuna)

Naive Bayes, Logistic Regression, SVM, and XGBoost (using TF-IDF)

Report.pdf

A PDF file containing the entire study, including the abstract, problem statement, dataset description, methodology, results, discussion, conclusion, and references.

processed_data.csv

A CSV file containing the preprocessed dataset used for training and evaluating the models.
Chimarra karimui Cartwright 2020, sp. nov.
Creators: name: Cartwright, David
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Trichoptera
Philopotamidae
Chimarra
Chimarra karimui

description: Chimarra karimui sp. nov.
Figures 95–97
Holotype. Male (dried, pinned specimen CT-388 figured), PNG, Western Highlands Province, Karimui (south-west of Goroka), about 6° 32' S, 144° 47' E, lt tr, 3 April 1963, J.L. and M. Gressitt (BPBM).
Paratype. PNG. 1 male (dried, pinned specimen CT-373), Western Highlands Province, Karimui, south of Goroka, 1000 m, about 6° 32' S, 144° 47' E, lt tr, 2 June 1961, J.L. and M. Gressitt (BPBM).
Diagnosis. The males of C. karimui can be separated from all other New Guinea species, including C. sinuosa and C. wara, by a combination of features, including the lateral lobes of segment X, with apex laterally directed and acute with a small preapical process (possibly sensilla-bearing), and likely on the ventral margin and the inferior appendages, which are broad basally, tapered gradually and slender in the distal half with acute apices.
Description. General body colour and wings fawn to light brown. Wings similar to those of C. ukarumpana (fig. 7). Length of forewing: male 5.7–6.1 mm. Forewing with forks 1, 2, 3 and 5 present, Rs moderately to strongly sinuous or curved, thickened, basad of discoidal cell.
Male. Segment IX anterior margin in lateral view, with narrowly rounded extension ventrally (fig. 95), ventral process short, basal to distal margin of segment IX (figs 95, 96), in lateral view sub-triangular, length about 0.6 times width, preanal appendages fused basally, rounded apically (fig. 95). Segment X lateral lobes with apex laterally directed and acute with a small preapical process (possibly sensilla-bearing), and likely on the ventral margin (figs 96, 97), in lateral view appears broad basally, narrowed near middle (fig. 95). Phallus with no included spines obvious. Inferior appendages broadest in basal half, tapered and slender distally, apices very acute, directed slightly posteromesally (figs 95–97), in lateral view, angled nearly vertically at about 80° to horizontal, length about 3 times maximum width, ventral margin angled strongly in basal third, dorsal and ventral margins curved in distal half (fig. 95), in dorsal and ventral views, mesal and lateral margins straight to very slightly curved in distal half (figs 96, 97).
Female. Unknown.
Etymology. Karimui – named for the type locality (Karimui).
Remarks. Chimarra karimui is known from two males from near the type locality in central PNG.
description: Published as part of Cartwright, David, 2020, A review of the New Guinea species of Chimarra Stephens (Trichoptera: Philopotamidae), pp. 1-49 in Memoirs of Museum Victoria 79 on page 31, DOI: 10.24199/j.mmv.2020.79.01, http://zenodo.org/record/8065297
Phoracantha recurva Newman 1840
Creators: name: Ferreira, Gabriel Dos Santos
name: Ferreira, André Da Silva
name: Bravo, Freddy
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Phoracantha
Phoracantha recurva

description: Phoracantha recurva Newman, 1840
Distribution. UNITED STATES OF AMERICA (California), BRAZIL (Bahia, Minas Gerais, Espírito Santo, Paraná, Santa Catarina and Rio Grande do Sul), PARAGUAY, CHILE, ARGENTINA (Corrientes, Córdoba, La Rioja, Santa Fé, Entre Ríos, Buenos Aires, La Pampa, and Río Negro), URUGUAY, GREECE, SPAIN, FRANCE, BELGIUM, ITALY, TURKEY, MALTA, TUNISIA, SOUTH AFRICA, MALAWI, MAROC, ZAMBIA, MOZAMBIQUE, ISRAEL, AUSTRALIA, NEW ZELAND, and PAPUA NEW GUINEA.
description: Published as part of Ferreira, Gabriel Dos Santos, Ferreira, André Da Silva & Bravo, Freddy, 2023, Annotated checklist of Cerambycidae (Coleoptera: Chrysomeloidea) from the Brazilian semi-arid region, with new species and new geographic records, pp. 1-81 in Zootaxa 5235 (1) on page 42, DOI: 10.11646/zootaxa.5235.1.1, http://zenodo.org/record/7610305
Patient Stratification to predict post-surgery organ injury
Creators: name: Adebayo, Adewale
Publisher: name: Zenodo
Year: 2024

description: Patient stratification is useful in personalised and precision medicine for appropriating treatments, improving outcomes and preventing adverse ones. In surgery as a whole and cardiac surgery in particular, research into pre- and post-surgery patient-groups and biological markers is important. 

In this study , patients stratified using routine blood measures and machine learning algorithms were further categorised using single-cell transcriptomics.

This repo documents analysis used  in  ... et al...... (in review)

 

0 - preprocess.R -- unix and R scripts used to generate counts data

1 - integ_annt_prop_analy.R       -- R scripts used to integrate cells, annotate celltypes, and determine proportions

2 - cellularsig_.R       -- scripts used to determine difference cellular signatures between groups

3 - intrctns_causinfer.R       -- scripts  used to determine interactions and causal inference

4. countsdata.rds     -- counts data

5. metadata.txt        -- metadata.txt
Tapinoma melanocephalum , Fab.
Creators: name: Forel, A.
Publisher: name: Zenodo
Year: 1893
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Tapinoma
Tapinoma melanocephalum

description: Tapinoma melanocephalum, Fab.
(No. 16 a). [[worker]] et [[queen]]. Espece cosmopolite des tropiques.
(16). Common about houses at Kingstown, and at Georgetown. Its white abdomen and quick, jerky walk give it a very peculiar appearance. The formicarium is small, consisting apparently of a single chamber, in a cavity of a wall, or under a stone. There may be fifty or more workers in the colony.
(16 a). Near Kingstown; shady place on a hill-side near sea-level. Small nest in rubbish lodged between two stones.
(Found also at Georgetown, on the windward coast).
description: Published as part of Forel, A., 1893, Formicides de l'Antille St. Vincent. Récoltées par Mons. H. H. Smith., pp. 333-418 in Transactions of the Entomological Society of London 1893 on pages 352-353
Alienosternus cristatus
Creators: name: Ferreira, Gabriel Dos Santos
name: Ferreira, André Da Silva
name: Bravo, Freddy
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Alienosternus
Alienosternus cristatus

description: Alienosternus cristatus (Zajciw, 1970)
Distribution. BRAZIL (Maranh„o, Piauí, Alagoas, Sergipe, Bahia, Mato Grosso, Goiás, Minas Gerais, and Mato Grosso do Sul).
description: Published as part of Ferreira, Gabriel Dos Santos, Ferreira, André Da Silva & Bravo, Freddy, 2023, Annotated checklist of Cerambycidae (Coleoptera: Chrysomeloidea) from the Brazilian semi-arid region, with new species and new geographic records, pp. 1-81 in Zootaxa 5235 (1) on page 42, DOI: 10.11646/zootaxa.5235.1.1, http://zenodo.org/record/7610305
Chimarra laensis Cartwright 2020, sp. nov.
Creators: name: Cartwright, David
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Trichoptera
Philopotamidae
Chimarra
Chimarra laensis

description: Chimarra laensis sp. nov.
Figures 98, 99
Holotype. Male (dried, pinned specimen CT-369 figured), PNG, Morobe District, Lae, Singnawa River, 30 m (6° 45' S, 147° 10' E), 3 April 1966, lt tr Kunai grass, O.R. Wilkes (BPBM).
Diagnosis. The male of C. laensis can be separated from all other New Guinea species, including C. aiyura, by the combination of the irregular, almost broadly serrated meso-ventral margin on the inferior appendages and the absence of a flange in the basal half of the lateral lobes of segment X, in dorsal view.
Description. General body colour and wings light brownish. Wings similar to those of C. ukarumpana (fig. 7). Length of forewing: male 4.9 mm. Forewing with forks 1, 2, 3 and 5 present, Rs very slightly sinuous or curved, thickened, basad of discoidal cell.
Male. Segment IX anterior margin in lateral view, anteroventrally broadly angular or sub-truncate, ventral process short, basal to distal margin of segment IX, in lateral view, keel-like, length about 0.6 times basal width, preanal appendages, slightly laterally compressed, appear rounded in lateral view (fig. 98), in dorsal view appear ovate (fig. 99). Segment X lateral lobes laterally compressed in basal three quarters, appear truncate distally, with sensilla not discerned (figs 98, 99), in lateral view robust (fig. 98), in dorsal view lateral lobes appear slender. Phallus with two short, slender spines included subapically and spine-like ventral process (apex of phallobase?; fig. 99). Inferior appendages short with apices acute, angled slightly posteromesally (figs 98, 99) in lateral view, broadest in basal half, tapered slightly distally, angled at about 45° to horizontal, length about 3.6 times width, dorsal margin slightly convex and ventral margin in basal half with three small projections with slight concavities between them, slightly concave in distal half (fig. 98), in dorsal view mesal and lateral margins slightly curved (fig. 99).
Female. Unknown.
Etymology. Laensis – named for the type locality (Lae).
Remarks. Chimarra laensis is known from the type locality in north-east PNG. I realise that the type specimen may not be in good shape, and the illustration is very incomplete, but the shape of the inferior appendage is distinctive in lateral view.
description: Published as part of Cartwright, David, 2020, A review of the New Guinea species of Chimarra Stephens (Trichoptera: Philopotamidae), pp. 1-49 in Memoirs of Museum Victoria 79 on pages 31-33, DOI: 10.24199/j.mmv.2020.79.01, http://zenodo.org/record/8065297
Colynthaea coriacea
Creators: name: Ferreira, Gabriel Dos Santos
name: Ferreira, André Da Silva
name: Bravo, Freddy
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Colynthaea
Colynthaea coriacea

description: Colynthaea coriacea (Erichson, 1849)
Distribution. GUYANA, FRENCH GUIANA, and BRAZIL (Mato Grosso, Piauí, Maranh„o, Bahia, Minas Gerais, Espírito Santo, Rio de Janeiro, S„o Paulo, Paraná, and Santa Catarina).
description: Published as part of Ferreira, Gabriel Dos Santos, Ferreira, André Da Silva & Bravo, Freddy, 2023, Annotated checklist of Cerambycidae (Coleoptera: Chrysomeloidea) from the Brazilian semi-arid region, with new species and new geographic records, pp. 1-81 in Zootaxa 5235 (1) on page 42, DOI: 10.11646/zootaxa.5235.1.1, http://zenodo.org/record/7610305
Additional file 1: Figure S1. of Clinical characteristics and outcomes according to age in lenalidomide-treated patients with RBC transfusion-dependent lower-risk MDS and del(5q)
Creators: name: Fenaux, Pierre
name: Aristoteles Giagounidis
name: Selleslag, Dominik
name: Beyne-Rauzy, Odile
name: Mittelman, Moshe
name: Muus, Petra
name: Nimer, Stephen
name: HellstrĂśm-Lindberg, Eva
name: Bayard Powell
name: Guerci-Bresler, Agnes
name: Mikkael Sekeres
name: H. Deeg
name: CaĂąizo, Consuelo Del
name: Greenberg, Peter
name: Shammo, Jamile
name: Skikne, Barry
name: Xujie Yu
name: List, Alan
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Science Policy
subject: Virology
subject: Computational Biology

description: Study populations in the MDS-003 and MDS-004 studies. Gray shaded boxes: age groups in the present analysis. LEN, lenalidomide. (DOCX 39Â kb)
Gorybia bahiensis Galileo & Martins 2010
Creators: name: Ferreira, Gabriel Dos Santos
name: Ferreira, André Da Silva
name: Bravo, Freddy
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Gorybia
Gorybia bahiensis

description: Gorybia bahiensis Galileo & Martins, 2010
Distribution. BRAZIL (Bahia).
description: Published as part of Ferreira, Gabriel Dos Santos, Ferreira, André Da Silva & Bravo, Freddy, 2023, Annotated checklist of Cerambycidae (Coleoptera: Chrysomeloidea) from the Brazilian semi-arid region, with new species and new geographic records, pp. 1-81 in Zootaxa 5235 (1) on page 42, DOI: 10.11646/zootaxa.5235.1.1, http://zenodo.org/record/7610305
Odontomachus haematodes , L.
Creators: name: Forel, A.
Publisher: name: Zenodo
Year: 1893
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Odontomachus
Odontomachus haematodes

description: Odontomachus haematodes, L.
(No. 4 a a 4 f). [[worker]] [[queen]];. race typique.
Le No. 15 a et 15 b est ce que M. le Prof. Emery a decrit sous le nom de O. haematodes v.? microcephalus. * M. Emery a deja emis des doutes a propos de ce singulier insecte, car il en avait recu un analogue ayant les caracteres de l´ O. chelifer, Ltr. il a aussi rendu attentif a l' enorme developpement de l'abdomen. Or M. Smith a trouve l'un de ces insectes dans une loge souterraine en compagnie de l'ouvriere du No. 4, c'est a dire de l' O. haematodes, L. Nous avons donc tout lieu d' admettre avec certitude qu'il ne s'agit pas ici d'une variete a nommer, mais, comme Emery lui-meme (Biolog. Centralblatt, 1891) l'admet, d'une sorte de femelle ergatoide dans le genre de la " femelle aptere " du Polyergus rufescens decouverte et decrite par Huber. Le dimorphisme de la forme de la tete (retrecissement posterieur) et la presence d'un ocelle median est un [[...]] ces curiosites que nous rencontrons ca et la dans la famille des Formicides et qui parait propre au genre Odontomachus.
N'est-ce peut etre pas, comme le pense Emery, l. c, par cette voie secondaire (dimorphisme de l'ouvriere) que se sont formees peu a peu les femelles apteres des Dorylides (Dichthadia)? Ces individus dimorphes devenus de plus en plus feconds et reguliers, auraient supplante peu a peu les 2 ailees de forme ordinaire, et ces dernieres auraient fini par disparaitre? Ce n'est qu'une hypothese; a l'avenir de venir la confirmer ou la contredire. Le termites presentent des analogies (Fritz Mueller).
description: Published as part of Forel, A., 1893, Formicides de l'Antille St. Vincent. Récoltées par Mons. H. H. Smith., pp. 333-418 in Transactions of the Entomological Society of London 1893 on page 353
Gorybia castanea
Creators: name: Ferreira, Gabriel Dos Santos
name: Ferreira, André Da Silva
name: Bravo, Freddy
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Gorybia
Gorybia castanea

description: Gorybia castanea (Gounelle, 1909)
Distribution. BRAZIL (Maranh„o, Piauí, Bahia, Mato Grosso, Goiás, Minas Gerais, and S„o Paulo).
description: Published as part of Ferreira, Gabriel Dos Santos, Ferreira, André Da Silva & Bravo, Freddy, 2023, Annotated checklist of Cerambycidae (Coleoptera: Chrysomeloidea) from the Brazilian semi-arid region, with new species and new geographic records, pp. 1-81 in Zootaxa 5235 (1) on page 42, DOI: 10.11646/zootaxa.5235.1.1, http://zenodo.org/record/7610305
Additional file 1: Figures S1â  S6. of A systems pharmacology-based approach to identify novel Kv1.3 channel-dependent mechanisms in microglial activation
Creators: name: Srikant Rangaraju
name: Raza, Syed
name: Pennati, Andrea
name: Qiudong Deng
name: Dammer, Eric
name: Duong, Duc
name: Pennington, Michael
name: Tansey, Malu
name: Lah, James
name: Ranjita Betarbet
name: Seyfried, Nicholas
name: Levey, Allan
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Flow cytometric confirmation of Kv1.3-channel specificity of the ShK-F6CA binding assay is shown in Figure S1. Comparison of ShK-F6CA labeling of Kv1.3 channels in splenic and brain-infiltrating macrophages is shown in Figure S2. Morphological changes induced by LPS, ShK-223, and LPS+ShK-223 treatment conditions are shown in Figure S3. Distribution of missing data in the proteomic data set is shown in Figure S4. Quantitative RT-PCR data showing validation of pro-inflammatory activation of BV2 microglia by LPS are shown in Figure S5. EHD1 upregulation by LPS and inhibition of EHD1 upregulation by ShK-223 is shown in Figure S6. (DOCX 1262 kb)
title: Heilung durch empathische Verfremdung
Creators: name: Frank, Susi
Publisher: name: Fachinformationsdienst Slavistik
Year: 2019
Subjects: subject: Dostlieva, Lia
subject: Ukrainisch
subject: Künstlerin
subject: Russisch-Ukrainischer Krieg
subject: Holodomor
subject: Ausstellung
subject: Geschichte 2019
subject: 491.8

description: Anlässlich der dritten Summer Academy von PRISMA UKRAÏNA “Beyond Violence. The (Im)possibility of Understanding and Remembering” wurde am 13. Juli 2019 die Ausstellung “Meni dosi soromno vykydati ižu. Babusja rozpovídala meni pro Holodomor” (I still feel sorry when I throw away food. Grandma used to tell me stories about the Holodomor) von Lia Dostlieva und Andrii Dostliev eröffnet.
description: novinkinachgegangen
Additional file 1: Figures S1â  S6. of A systems pharmacology-based approach to identify novel Kv1.3 channel-dependent mechanisms in microglial activation
Creators: name: Srikant Rangaraju
name: Raza, Syed
name: Pennati, Andrea
name: Qiudong Deng
name: Dammer, Eric
name: Duong, Duc
name: Pennington, Michael
name: Tansey, Malu
name: Lah, James
name: Ranjita Betarbet
name: Seyfried, Nicholas
name: Levey, Allan
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Flow cytometric confirmation of Kv1.3-channel specificity of the ShK-F6CA binding assay is shown in Figure S1. Comparison of ShK-F6CA labeling of Kv1.3 channels in splenic and brain-infiltrating macrophages is shown in Figure S2. Morphological changes induced by LPS, ShK-223, and LPS+ShK-223 treatment conditions are shown in Figure S3. Distribution of missing data in the proteomic data set is shown in Figure S4. Quantitative RT-PCR data showing validation of pro-inflammatory activation of BV2 microglia by LPS are shown in Figure S5. EHD1 upregulation by LPS and inhibition of EHD1 upregulation by ShK-223 is shown in Figure S6. (DOCX 1262 kb)
Cryptocurrency Risk, Trust, and Acceptance in Thailand: A Comparative Study with Switzerland
Creators: name: Suriyan, Kanyanut
name: Weingaertner, Tim
Publisher: name: arXiv
Year: 2024
Subjects: subject: Computational Engineering, Finance, and Science (cs.CE)
subject: FOS: Computer and information sciences

description: The adoption of the Pao Tang digital wallet in Thailand, promoted under the Khon la Krueng (50-50 Co-Payment) Scheme, illustrates Thailand's receptiveness to digital financial instruments, amassing over 40 million users in just three years during the COVID-19 social distancing era. Nevertheless, acceptance of this platform does not confirm a broad understanding of cryptocurrencies and Web 3.0 technologies in the region. Through a mix of documentary research, online surveys and a targeted interview with the Pao Tang app's founder, this study evaluates the factors behind the Pao Tang platform's success and contrasts it with digital practices in Switzerland. Preliminary outcomes reveal a pronounced knowledge gap in Thailand regarding decentralized technologies. With regulatory frameworks for Web 3.0 and digital currencies still nascent, this research underscores the need for further exploration, serving as a blueprint for shaping strategies, policies, and awareness campaigns in both countries.
description: 21 pages
Chimarra sappela Cartwright 2020, sp. nov.
Creators: name: Cartwright, David
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Trichoptera
Philopotamidae
Chimarra
Chimarra sappela

description: Chimarra sappela sp. nov.
Figures 100–102
Holotype. Male (dried, pinned specimen CT-392 figured), PNG, Morobe District, Wau, 1200 m, about 7° 20' S, 146° 43' E, 7 July 1961, J. Sedlacek (BPBM).
Diagnosis. The male of C. sappela can be separated from all other New Guinea species, including C. morobensis, by the combination of the robust pincer-like inferior appendages with almost straight ventral margin, tapered in distal half, with acute apices angled meso-distally, plus the slender, hooked ventral lateral lobes of segment X, situated below the phallus in lateral view.
Description. General body colour and wings light brownish. Wings similar to those of C. ukarumpana (fig. 7). Length of forewing: male 5.1 mm. Forewing with forks 1, 2, 3 and 5 present, Rs moderately sinuous or curved, moderately thickened, basad of discoidal cell.
Male. Segment IX anterior margin in lateral view, anteroventrally angular (fig. 100), ventral process short, basal to distal margin of segment IX (figs 100, 101), in lateral view, keel-like with rounded distal margin, length about half width, preanal appendages ovate (figs 100, 102). Segment X lateral lobes with sensilla not discerned (fig. 102), dorsal lateral lobes relatively long, situated slightly above phallus (fig. 100), in dorsal view lobes elongate, triangular (fig. 102), ventral lateral lobes short, slender, hooked, apices angled downwards below phallus (fig. 100). Phallus with one slender spine included subapically (figs 100–102). Inferior appendages broadest in basal half, tapered in distal half to acute apices directed posteromesally (figs 100–102), in lateral view, angled at about 30° to horizontal, length about 3.7 times width, dorsal margin slightly concave in distal half and ventral margin mostly straight (fig. 100), in ventral and dorsal views, mesal and lateral margins slightly curved (figs 101, 102).
Female. Unknown.
Etymology. Sappela – New Guinea Pidgin for sharp (apices of inferior appendages).
Remarks. Chimarra sappela is known from the type locality in north-east PNG.
description: Published as part of Cartwright, David, 2020, A review of the New Guinea species of Chimarra Stephens (Trichoptera: Philopotamidae), pp. 1-49 in Memoirs of Museum Victoria 79 on page 33, DOI: 10.24199/j.mmv.2020.79.01, http://zenodo.org/record/8065297
Anochetus mayri , Emery
Creators: name: Forel, A.
Publisher: name: Zenodo
Year: 1893
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Anochetus
Anochetus mayri

description: Anochetus Mayri, Emery.
(No. 29 a a 29 f). [[worker]] [[queen]].
(29). Rather rare below 1500 ft., forming small colonies (three or four to twelve) under stones or sod, generally in shady places. The ants are sluggish.
(29 a). Lot 14. Estate (windward), 500 ft. April 5 th. Shady glen near a stream; under decayiag leaves on a rock ..
(29 b). Wallilobo Valley (leeward), 500 ft.; shady place, at the roots of sod on a rock. Nov. 8 th.. From two nests; the larger had about twelve ants.
(29 c). Forest above Chateaubelais (leeward), 1000 ft.; under a stone. A single specimen with one egg. Oct. 11 th.
(29 d). Bowwood Valley, near Kingstown, 800 ft. Oct. 21 st. Open hill-side, under a stone.
(29 e). Petit Bordelle Valley, 1200 ft. Nov. 13 th. Under sod on a rock. Apparently there were several small chambers connected by passages, the whole extending about one foot; fifteen or twenty ants occupied each chamber, and in one were about twenty yellow pupae.
(29 f). Richmond Valley; forest, 1100 ft. Dec. 29 th. Under fallen flowers.
description: Published as part of Forel, A., 1893, Formicides de l'Antille St. Vincent. Récoltées par Mons. H. H. Smith., pp. 333-418 in Transactions of the Entomological Society of London 1893 on page 356