cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Improvement for Color Glass Condensate factorization: single hadron production in pA collisions at next-to-leading order
Creators: name: Liu, Hao-Yu
name: Ma, Yan-Qing
name: Chao, Kuang-Ta
Publisher: name: arXiv
Year: 2019
Subjects: subject: Nuclear Theory (nucl-th)
subject: High Energy Physics - Experiment (hep-ex)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: High order calculation at semi-hard scale is very important, but a satisfactory calculation framework is still missing. We propose a systematic method to regularize rapidity divergences in the CGC factorization, which makes higher order calculation rigorous and straight forward. By applying this method to single hadron production in pA collision, we find the kinematic constraint effect introduced by hand in previous works comes out automatically, but with different values. The difference is crucial for our next-to-leading order (NLO) result to have a smaller theoretical uncertainty comparing with LO result, which makes high order calculation in CGC factorization to be useful. As a byproduct, the negativity problem found in literature can also be overcome in our framework by a proper choosing of factorization scale.
description: 10 pages, 3 figures, published version
MOESM1 of Genotyping and characterization of prophage patterns in clinical isolates of Staphylococcus aureus
Creators: name: Mahya Dini
name: Shokoohizadeh, Leili
name: Jalilian, Farid
name: Moradi, Abbas
name: Arabestani, Mohammad
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 1: Table S1. Primer sequences used in the prophage typing and rep-PCR in the S. aureus isolates.
Suppression of quarkonia in PbPb collisions at $\sqrt{s_{NN}}$ = 5.02 TeV
Creators: name: Kumar, Vineet
name: Shukla, Prashant
name: Bhattacharyya, Abhijit
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Experiment (nucl-ex)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We study different processes responsible for the modification of quarkonia yields in the medium produced in PbPb collisions at $\sqrt{s_{NN}}$ = 5.02 TeV. The quarkonia and heavy flavour cross sections are estimated using the measurements in pp collisions at LHC energies and shadowing corrections are obtained using the EPS09 parametrizations. A kinetic model is used which incorporates quarkonia suppression inside the Quark Gluon Plasma (QGP), suppression due to hadronic comovers, and regeneration from recombination of heavy quark pairs. The quarkonia dissociation cross section due to gluon collisions, including both color-electric dipole and color-magnetic dipole transitions, has been employed. The regeneration rate is obtained using the principle of detailed balance. The effect of these processes on the nuclear modification factors for both $\Jpsi$ and $Υ$ in different ranges of transverse momentum $\pT$ and rapidity has been studied for PbPb collisions at $\sNN =$ 5.02 TeV. The calculations are compared with the available results from LHC experiments. Both the suppression and regeneration due to a QGP are effective in the low and intermediate $\pT$ range. The large observed suppression of $\Jpsi$ at $\pT~>$ 10 GeV/$c$ is larger than the suppression expected due to gluon dissociation.
description: 19 pages, 10 figures
Additional file 1: of Accelerated aortic 4D flow cardiovascular magnetic resonance using compressed sensing: applicability, validation and clinical integration
Creators: name: Neuhaus, Elisabeth
name: Weiss, Kilian
name: Bastkowski, Rene
name: Koopmann, Jonas
name: Maintz, David
name: Giese, Daniel
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Space Science
subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Bland-Altman analysis of peak flows. Bland-Altman plots comparing peak flows of S2 and CS accelerated scans in six contours (indicated by different markers). The mean differences, standard deviations and their confidence intervals (red shaded areas) were calculated from the data points of all contours. The red data points denote the data of the volunteer whose net flow curves are shown in Fig. 2. (PDF 243 kb)
Auditory beat perception is related to speech output fluency in post-stroke aphasia
Creators: name: Stefaniak, James D.
name: Lambon Ralph, Matthew A.
name: De Dios Perez, Blanca
name: Griffiths, Timothy D.
name: Grube, Manon
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Article
/631/378/1689/534
/631/378/2649/1594
/631/378/2649/1723
/692/617/375/534
article

description: Funder: European Research Council; doi: http://dx.doi.org/10.13039/501100000781; Grant(s): GAP: 670428
description: Abstract: Aphasia affects at least one third of stroke survivors, and there is increasing awareness that more fundamental deficits in auditory processing might contribute to impaired language performance in such individuals. We performed a comprehensive battery of psychoacoustic tasks assessing the perception of tone pairs and sequences across the domains of pitch, rhythm and timbre in 17 individuals with post-stroke aphasia and 17 controls. At the level of individual differences we demonstrated a correlation between metrical pattern (beat) perception and speech output fluency with strong effect (Spearman’s rho = 0.72). This dissociated from more basic auditory timing perception, which did not correlate with output fluency. This was also specific in terms of the language and cognitive measures, amongst which phonological, semantic and executive function did not correlate with beat detection. We interpret the data in terms of a requirement for the analysis of the metrical structure of sound to construct fluent output, with both being a function of higher-order “temporal scaffolding”. The beat perception task herein allows measurement of timing analysis without any need to account for motor output deficit, and could be a potential clinical tool to examine this. This work suggests strategies to improve fluency after stroke by training in metrical pattern perception.
Mursia hawaiiensis Rathbun 1894
Creators: name: Castro, Peter
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Calappidae
Mursia
Mursia hawaiiensis

description: Mursia hawaiiensis Rathbun, 1894
 Mursia hawaiiensis Rathbun, 1894: 252 [type locality: Kaiwi Channel east of O‘ahu; holotype: USNM 17515].
 Additional Hawaiian Is. records:
 Mursia hawaiiensis Rathbun, 1894 — Rathbun 1906: 887, pl. 18, figs. 3, 4 [Kaua‘i, O‘ahu, Maui, Hawai‘i]. — Clarke 1972b: table 2 [O‘ahu]. — Galil 1993: 363, figs. 4c, 6d, e, 8a, b [Kaua‘i, O‘ahu, Maui]. — Chave & Malahoff 1998: table 1 [O‘ahu, Hawai‘i].
 Taxonomy. Galil (1993)
 Geographical distribution. Japan, Hawaiian Is., French Polynesia
 Habitat. Buries in sand; subtidal to bathyal, 96–1252 m.
description: Published as part of Castro, Peter, 2011, Catalog of the anomuran and brachyuran crabs (Crustacea: Decapoda: Anomura, Brachyura) of the Hawaiian Islands 2947, pp. 1-154 in Zootaxa 2947 (1) on page 40, DOI: 10.11646/zootaxa.2947.1.1, http://zenodo.org/record/5283044
Structure guided prediction of Pyrazinamide resistance mutations in pncA
Creators: name: Karmakar, Malancha
name: Rodrigues, Carlos H. M.
name: Horan, Kristy
name: Denholm, Justin T.
name: Ascher, David B.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article
/631/114/663
/631/535/1267
/692/699/255/1856
/101
/119
article

description: Abstract: Pyrazinamide plays an important role in tuberculosis treatment; however, its use is complicated by side-effects and challenges with reliable drug susceptibility testing. Resistance to pyrazinamide is largely driven by mutations in pyrazinamidase (pncA), responsible for drug activation, but genetic heterogeneity has hindered development of a molecular diagnostic test. We proposed to use information on how variants were likely to affect the 3D structure of pncA to identify variants likely to lead to pyrazinamide resistance. We curated 610 pncA mutations with high confidence experimental and clinical information on pyrazinamide susceptibility. The molecular consequences of each mutation on protein stability, conformation, and interactions were computationally assessed using our comprehensive suite of graph-based signature methods, mCSM. The molecular consequences of the variants were used to train a classifier with an accuracy of 80%. Our model was tested against internationally curated clinical datasets, achieving up to 85% accuracy. Screening of 600 Victorian clinical isolates identified a set of previously unreported variants, which our model had a 71% agreement with drug susceptibility testing. Here, we have shown the 3D structure of pncA can be used to accurately identify pyrazinamide resistance mutations. SUSPECT-PZA is freely available at: http://biosig.unimelb.edu.au/suspect_pza/.
Heartbeat of the Mouse: a young radio pulsar associated with the axisymmetric nebula G359.23-0.82
Creators: name: Camilo, F.
name: Manchester, R. N.
name: Gaensler, B. M.
name: Lorimer, D. R.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We report the discovery of PSR J1747-2958, a radio pulsar with period P = 98 ms and dispersion measure DM = 101 pc/cc, in a deep observation with the Parkes telescope of the axially-symmetric "Mouse" radio nebula (G359.23-0.82). Timing measurements of the newly discovered pulsar reveal a characteristic age Pdt/2dP = 25 kyr and spin-down luminosity dE/dt = 2.5e36 erg/s. The pulsar (timing) position is consistent with that of the Mouse's "head". The distance derived from the DM, ~2 kpc, is consistent with the Mouse's distance limit from HI absorption, < 5.5 kpc. Also, the X-ray energetics of the Mouse are compatible with being powered by the pulsar. Therefore we argue that PSR J1747-2958, moving at supersonic speed through the local interstellar medium, powers this unusual non-thermal nebula. The pulsar is a weak radio source, with period-averaged flux density at 1374 MHz of 0.25 mJy and luminosity ~1 mJy kpc^2.
description: 6 pages, 2 figures, accepted for publication in ApJ Letters
The linear stability of Reissner-Nordström spacetime: the full subextremal range
Creators: name: Giorgi, Elena
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Mathematical Physics (math-ph)
subject: Analysis of PDEs (math.AP)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: We prove the linear stability of subextremal Reissner-Nordström spacetimes as solutions to the Einstein-Maxwell equation. We make use of a novel representation of gauge-invariant quantities which satisfy a symmetric system of coupled wave equations. This system is composed of two of the three equations separately derived in previous works, where the estimates required arbitrary smallness of the charge. Here, the estimates are obtained by defining a combined energy-momentum tensor for the system in terms of the symmetric structure of the right hand sides of the equations. We obtain boundedness of the energy, Morawetz estimates and decay for the full subextremal range |Q|
description: 45 pages, 1 figure, version accepted for publication
State intervention in irrigation development: The Village Irrigation Rehabilitation Programme
Creators: name: Abeyratne, S.
name: Abeyratne, S.
Publisher: name: Unknown
Year: 1986
Subjects: subject: Agricultural and Food Policy
subject: Community/Rural/Urban Development
subject: Farm Management
subject: Farmers' associations
subject: Irrigation programs
subject: Governmental interrelations
subject: Development
subject: Rehabilitation
subject: Agricultural policy
subject: Farmer-agency interactions

description: In IIMI, Participatory management in Sri Lanka's irrigation schemes. Digana Village via Kandy, Sri Lanka: IIMI
Diagnostic accuracy of circulating-free DNA for the determination of MYCN amplification status in advanced-stage neuroblastoma: a systematic review and meta-analysis
Creators: name: Trigg, Ricky M.
name: Turner, Suzanne D.
name: Shaw, Jacqueline A.
name: Jahangiri, Leila
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article
/631/67/2332
/692/308/53/2421
article

description: Abstract: Background: MYCN amplification (MNA) is the strongest indicator of poor prognosis in neuroblastoma (NB). This meta-analysis aims to determine the diagnostic accuracy of MNA analysis in circulating-free DNA (cfDNA) from advanced-stage NB patients. Methods: A systematic review of electronic databases was conducted to identify studies exploring the detection of MNA in plasma/serum cfDNA from NB patients at diagnosis using PCR methodology. Pooled estimates for sensitivity, specificity and diagnostic odds ratio (DOR) were calculated by conducting a bivariate/HSROC random-effects meta-analysis. Results: Seven studies, with a total of 529 advanced-stage patients, were eligible. The pooled sensitivity of cfDNA-based MNA analysis was 0.908 (95% CI, 0.818–0.956), the pooled specificity was 0.976 (0.940–0.991) and the DOR was 410.0 (−103.6 to 923.7). Sub-grouped by INSS stage, the sensitivity for stage 3 and 4 patients was 0.832 (0.677–0.921) and 0.930 (0.834–0.972), respectively. The specificity was 0.999 (0.109–1.000) and 0.974 (0.937–0.990), respectively, and the DOR was 7855.2 (−66267.0 to 81977.4) and 508.7 (−85.8 to 1103.2), respectively. Conclusions: MNA analysis in cfDNA using PCR methodology represents a non-invasive approach to rapidly and accurately determine MNA status in patients with advanced-stage NB. Standardised methodology must be developed before this diagnostic test can enter the clinic.
Additional file 1 of Bioengineered stem cell membrane functionalized nanoparticles combine anti-inflammatory and antimicrobial properties for sepsis treatment
Creators: name: Lu, Lu
name: Quan, Lingli
name: Li, Jian
name: Yuan, Junbin
name: Nie, Xinmin
name: Huang, Xueyuan
name: Dong, Hang
name: Su, Yanrong
name: Huang, Yufen
name: Kou, Qingjie
name: Liu, Leping
name: Liu, Haiting
name: Zhou, Xionghui
name: Gui, Rong
name: Gu, Lan
Publisher: name: figshare
Year: 2023
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Supplementary Material 1
Functioning of the Family 500+ program on a selected example of rural areas
Creators: name: Sadowski, Arkadiusz
name: Samoląg, Monika
name: Sadowski, Arkadiusz
name: Samoląg, Monika
Publisher: name: Unknown
Year: 2020
Subjects: subject: Consumer/Household Economics
subject: Political Economy
subject: Public Economics
subject: Family 500+
subject: social policy
subject: Wielkopolska Region
subject: commune Duszniki

description: The governmental program Family 500+ [pl Rodzina 500+] is a relatively new instrument of social policy in Poland, aimed at supporting families. It involves monthly payment of PLN 500 for each second and subsequent child in the family. If the income per person does not exceed PLN 800, the benefit is also payable for the first child. The program it has been functioning since 2016 in the presented formula (currently it is planned to extend the support to all children, regardless of the income criterion), so it is now possible to undertake research on its short-term effects. The program is aimed at families with children under the age of 18, regardless of place of residence and social status, however, it plays a specific role in rural areas, where social problems and the family model are slightly different than in urban areas. First of all, there is a disposable income disparity in the countryside, and fertility rate is higher. Therefore, research was undertaken to indicate the effects of the 500+ Program and the opinion of its beneficiaries living in rural areas. As an example, the rural commune of Duszniki, located in the Wielkopolska Region was selected. First, the authors of the paper analyzed data from the Commune Social Welfare Center, which is the program administrator at the local level. Second, they conducted a survey on a sample of 100 parents who expressed their opinions on the functioning of the program. As a result of the research, it was noticed that in the analyzed commune a significant part of the beneficiaries use support for the first child, which indicates a fairly large poverty range. On the other hand, the surveys have shown that the funds granted help to raise children, although they do not cover the necessary expenses in full. For the most part, they are devoted to the basic needs of children, such as food, clothing and education. Also, the authors noted a dangerous phenomenon of women’s professional deactivation after the ntroduction of the program. In addition, the research pointed to the existence of a specific form of “free riding” – respondents to a small extent declared the enlargement of the family after the introduction of the program, although they believed that on a national scale it will contribute to the increase in total fertility rate.
description: DOI:10.30858/RAD/2020/17.0200
Ferromagnetism in (In,Mn)As Diluted Magnetic Semiconductor Thin Films Grown by Metalorganic Vapor Phase Epitaxy
Creators: name: Blattner, A. J.
name: Wessels, B. W.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: In1-xMnxAs diluted magnetic semiconductor (DMS) thin films have been grown using metalorganic vapor phase epitaxy (MOVPE). Tricarbonyl(methylcyclopentadienyl)manganese was used as the Mn source. Nominally single-phase, epitaxial films were achieved with Mn content as high as x=0.14 using growth temperatures Tg>475 C. For lower growth temperatures and higher Mn concentrations, nanometer scale MnAs precipitates were detected within the In1-xMnxAs matrix. Magnetic properties of the films were investigated using a superconducting quantum interference device (SQUID) magnetometer. Room-temperature ferromagnetic order was observed in a sample with x=0.1. Magnetization measurements indicated a Curie temperature of 333 K and a room-temperature saturation magnetization of 49 emu/cm^3. The remnant magnetization and the coercive field were small, with values of 10 emu/cm^3 and 400 Oe, respectively. A mechanism for this high-temperature ferromagnetism is discussed in light of the recent theory based on the formation of small clusters of a few magnetic atoms.
description: 5 pages, 5 figures, accepted for publication in JVSTB
Participatory management in irrigation projects: The unfinished experiment in Sri Lanka
Creators: name: Wimaladharma, K. P.
name: Wimaladharma, K. P.
Publisher: name: Unknown
Year: 1986
Subjects: subject: Community/Rural/Urban Development
subject: Farm Management
subject: Farmer participation
subject: Irrigation management
subject: Tank irrigation
subject: Farmer-agency interactions
subject: Irrigation programs
subject: Rural development
subject: Farmers' associations

description: In International Irrigation Management Institute, Participatory management in Sri Lanka's irrigation schemes. Digana Village via Kandy, Sri Lanka: IIMI
Nonlocal electrodynamics of two-dimensional wire mesh photonic crystals
Creators: name: Pokrovsky, A. L.
name: Efros, A. L.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: We calculate analytically the spectra of plasma waves and electromagnetic waves (EMW) in metallic photonic crystal consisting of the parallel thin infinite metallic cylinders embedded in the dielectric media. The axes of metallic cylinders form a regular square lattice in a plane perpendicular to them. The metal inside the cylinders is assumed to be in the high frequency regime $ωτ>> 1$, where $τ$ is the relaxation time. The proposed analytical theory is based upon small parameters $f << 1$, where $f$ is the volume fraction of the metal, and $kR << 1$, where $k$ is the wave vector and $R$ is the radius of the cylinder. It is shown that there are five different branches of the EMW that cover all frequency range under consideration except one very small omnidirectional gap in the vicinity of the frequency of the surface plasmon. However, at some directions of propagation and polarizations the gap may be much larger. The reflection and refraction of the EMW is also considered. The general theory of refraction is proposed which is complicated by the spatial dispersion of the dielectric constant, and one particular geometry of the incident EMW is considered.
description: 14 pages, 8 figures
The Fate of Instability of de Sitter Black Holes at Large $D$
Creators: name: Li, Peng-Cheng
name: Zhang, Cheng-Yong
name: Chen, Bin
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We study non-linearly the gravitational instabilities of Reissner-Nordstrom-de Sitter and Gauss-Bonnet-de Sitter black holes by using the large $D$ expansion method. In both cases, the thresholds of the instability are found to be consistent with the linear analysis, and on the thresholds the evolutions of the black holes under perturbations settle down to stationary lumpy solutions. However, the solutions in unstable region are highly time-dependent, and resemble the fully localized black spots and black ring with $S^{D-2}$ and $S^1\times S^{D-3}$ topologies, respectively. Our study indicates the possible transition between the lumpy black holes and localized black holes in higher dimensions.
description: 17 pages, 4 figures, accepted version
Carpilius convexus
Creators: name: Castro, Peter
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Carpiliidae
Carpilius
Carpilius convexus

description: Carpilius convexus (Forskål, 1775)
 Cancer convexus Forskål, 1775: 88 [type locality: Red Sea; type material presumed lost].
 Hawaiian Is. records:
 Carpilius convexus (Forskål, 1775) — Dana 1852b: 159, pl. 7, fig. 5 [“Sandwich Is.”]. — Rathbun 1906: 842 [O‘ahu, Hawai‘i]. — Lenz 1901: 464 [Laysan]. — Pesta 1033: 280 [H.I.]. — Edmondson 1925: 54 [O‘ahu, Johnston Atoll]; 1946: 284, fig. 176 a [H.I.]; 1962a: 223, fig. 1b [H.I.]. — Buitendijk 1960: 263 [Hawai‘i]. — Tinker 1965: 112, pl. 44 [H.I.]. — Amerson & Shelton 1976: 75 [Johnston Atoll]. — Titcomb et al. 1979: 366 [H.I.]. — Titgen 1987: 108 [O‘ahu]. — Wetzer et al. 2003: 412 [Maro Reef, Necker]. — Hoover 2006: 278, color photograph [O‘ahu].
 Taxonomy. Crosnier (1984b), Wetzer et al. (2003)
 Geographical distribution. Across Indo-West Pacific region; Clipperton I. (Tropical Eastern Pacific region).
 Habitat. Shallow subtidal, 10–59 m.
description: Published as part of Castro, Peter, 2011, Catalog of the anomuran and brachyuran crabs (Crustacea: Decapoda: Anomura, Brachyura) of the Hawaiian Islands 2947, pp. 1-154 in Zootaxa 2947 (1) on page 41, DOI: 10.11646/zootaxa.2947.1.1, http://zenodo.org/record/5283044
Theory of Neutrino Masses and Mixings
Creators: name: Murayama, Hitoshi
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Neutrino physics is going through a revolutionary progress. In this talk I review what we have learned and why neutrino mass is so important. Neutrino masses and mixings are already shedding new insight into the origin of flavor. Given the evidences for neutrino mass, leptogenesis is gaining momentum as the origin of cosmic baryon asymmetry. Best of all, we will learn a lot more in the coming years.
description: Talk at Lepton Photon 2001. 18 pages, LaTeX2e, uses ws-p10x7.cls
Advanced Materials and Device Architectures for Magnetooptical Spatial Light Modulators
Creators: name: Kharratian, Soheila
name: Urey, Hakan
name: Onbaşlı, Mehmet C.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Applied Physics (physics.app-ph)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: Faraday and Kerr rotations are magnetooptical (MO) effects used for rotating the polarization of light in transmission and reflection from a magnetized medium, respectively. MO effects combined with intrinsically fast magnetization reversal, which can go down to a few tens of femtoseconds or less, can be applied in magnetooptical spatial light modulators (MOSLMs) promising for nonvolatile, ultrafast, and high-resolution spatial modulation of light. With the recent progress in low-power switching of magnetic and MO materials, MOSLMs may lead to major breakthroughs and benefit beyond state-of-the-art holography, data storage, optical communications, heads-up displays, virtual and augmented reality devices, and solid-state light detection and ranging (LIDAR). In this study, the recent developments in the growth, processing, and engineering of advanced materials with high MO figures of merit for practical MOSLM devices are reviewed. The challenges with MOSLM functionalities including the intrinsic weakness of MO effect and large power requirement for switching are assessed. The suggested solutions are evaluated, different driving systems are investigated, and resulting device architectures are benchmarked. Finally, the research opportunities on MOSLMs for achieving integrated, high-contrast, and low-power devices are presented.
MOESM1 of Mathematical model of hypoxia and tumor signaling interplay reveals the importance of hypoxia and cell-to-cell variability in tumor growth inhibition
Creators: name: Chen, Emile
name: Song, Roy
name: Xueer Chen
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer

description: Additional file 1. Model description and simulation. This document contains additional information on model development, simulation, and analysis.
The psychiatric phenotypes of 1q21 distal deletion and duplication
Creators: name: Linden, Stefanie C.
name: Watson, Cameron J.
name: Smith, Jacqueline
name: Chawner, Samuel J. R. A.
name: Lancaster, Thomas M.
name: Evans, Ffion
name: Williams, Nigel
name: Skuse, David
name: Raymond, F. Lucy
name: Hall, Jeremy
name: Owen, Michael J.
name: Linden, David E. J.
name: Green-Snyder, LeeAnne
name: Chung, Wendy K.
name: Maillard, Anne M.
name: Jacquemont, Sébastien
name: Van Den Bree, Marianne B. M.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Article
/692/420/2489
/692/699/476
/45
/45/61
article

description: Funder: RCUK | Medical Research Council (MRC); doi: https://doi.org/10.13039/501100000265
description: Funder: Wellcome Trust (Wellcome); doi: https://doi.org/10.13039/100004440
description: Funder: Waterloo Foundation (TWF); doi: https://doi.org/10.13039/100012107
description: Funder: Health and Care Research Wales (Ymchwil Iechyd a Gofal Cymru); doi: https://doi.org/10.13039/100012068
description: Funder: Simons Foundation; doi: https://doi.org/10.13039/100000893
description: Abstract: Copy number variants are amongst the most highly penetrant risk factors for psychopathology and neurodevelopmental deficits, but little information about the detailed clinical phenotype associated with particular variants is available. We present the largest study of the microdeletion and -duplication at the distal 1q21 locus, which has been associated with schizophrenia and intellectual disability, in order to investigate the range of psychiatric phenotypes. Clinical and cognitive data from 68 deletion and 55 duplication carriers were analysed with logistic regression analysis to compare frequencies of mental disorders between carrier groups and controls, and linear mixed models to compare quantitative phenotypes. Both children and adults with copy number variants at 1q21 had high frequencies of psychopathology. In the children, neurodevelopmental disorders were most prominent (56% for deletion, 68% for duplication carriers). Adults had increased prevalence of mood (35% for deletion [OR = 6.6 (95% CI: 1.4–40.1)], 55% for duplication carriers [8.3 (1.4–55.5)]) and anxiety disorders (24% [1.8 (0.4–8.4)] and 55% [10.0 (1.9–71.2)]). The adult group, which included mainly genetically affected parents of probands, had an IQ in the normal range. These results confirm high prevalence of neurodevelopmental disorders associated with CNVs at 1q21 but also reveal high prevalence of mood and anxiety disorders in a high-functioning adult group with these CNVs. Because carriers of neurodevelopmental CNVs who show relevant psychopathology but no major cognitive impairment are not currently routinely receiving clinical genetic services widening of genetic testing in psychiatry may be considered.
Questioning the Equivalence Principle
Creators: name: Damour, Thibault
Publisher: name: arXiv
Year: 2001
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: The Equivalence Principle (EP) is not one of the ``universal'' principles of physics (like the Action Principle). It is a heuristic hypothesis which was introduced by Einstein in 1907, and used by him to construct his theory of General Relativity. In modern language, the (Einsteinian) EP consists in assuming that the only long-range field with gravitational-strength couplings to matter is a massless spin-2 field. Modern unification theories, and notably String Theory, suggest the existence of new fields (in particular, scalar fields: ``dilaton'' and ``moduli'') with gravitational-strength couplings. In most cases the couplings of these new fields ``violate'' the EP. If the field is long-ranged, these EP violations lead to many observable consequences (variation of ``constants'', non-universality of free fall, relative drift of atomic clocks,...). The best experimental probe of a possible violation of the EP is to compare the free-fall acceleration of different materials.
description: 14 pages, contribution to the ONERA workshop on "Missions spatiales en physique fondamentale" (Chatillon, 18-19 Jan 2001), to appear in a special issue of the Comptes Rendus de l'Academie des Sciences (Paris), edited by C. Borde and P. Touboul
The effect of gadolinium-based contrast agent administration on magnetic resonance fingerprinting-based T 1 relaxometry in patients with prostate cancer
Creators: name: Sushentsev, Nikita
name: Kaggie, Joshua D.
name: Buonincontri, Guido
name: Schulte, Rolf F.
name: Graves, Martin J.
name: Gnanapragasam, Vincent J.
name: Barrett, Tristan
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article
/631/67
/692/4025
/692/308
/692/4028
/692/4028/67/2321
/692/4028/67/589
article

description: Abstract: Magnetic resonance fingerprinting (MRF) is a rapidly developing fast quantitative mapping technique able to produce multiple property maps with reduced sensitivity to motion. MRF has shown promise in improving the diagnosis of clinically significant prostate cancer but requires further validation as part of a prostate multiparametric (mp) MRI protocol. mpMRI protocol mandates the inclusion of dynamic contrast enhanced (DCE) imaging, known for its significant T1 shortening effect. MRF could be used to measure both pre- and post-contrast T1 values, but its utility must be assessed. In this proof-of-concept study, we sought to evaluate the variation in MRF T1 measurements post gadolinium-based contrast agent (GBCA) injection and the utility of such T1 measurements to differentiate peripheral and transition zone tumours from normal prostatic tissue. We found that the T1 variation in all tissues increased considerably post-GBCA following the expected significant T1 shortening effect, compromising the ability of MRF T1 to identify transition zone lesions. We, therefore, recommend performing MRF T1 prior to DCE imaging to maintain its benefit for improving detection of both peripheral and transition zone lesions while reducing additional scanning time. Demonstrating the effect of GBCA on MRF T1 relaxometry in patients also paves the way for future clinical studies investigating the added value of post-GBCA MRF in PCa, including its dynamic analysis as in DCE-MRF.
Single-photon characterization by two-photon spectral interferometry
Creators: name: Thiel, Valérian
name: Davis, Alex O. C.
name: Sun, Ke
name: D'Ornellas, Peru
name: Jin, Xian-Min
name: Smith, Brian J.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Single-photon sources are a fundamental resource in quantum optics. The indistinguishability and purity of photons emitted from different sources are crucial (necessary, essential) properties for many quantum applications to ensure high-visibility interference between different sources. The state of a single-photon source is described by the modes occupied by the single light quanta. Thus the ability to determine the mode structure of a single-photon source provides a means to assess its quality, compare different sources, and provide feedback for source engineering. Here, we propose and demonstrate an experimental scheme that allows for complete characterization of the spectral-temporal state of a pulsed single-photon source. The density matrix elements of the single-photon source are determined by spectral interferometry with a known single-photon reference. Frequency-resolved coincidence measurements are performed after the unknown single-photon source is interfered with a single-photon reference pulse. Fourier analysis of the frequency-resolved two-photon interference pattern reveals the spectral-temporal density matrix of the broadband single-photon source. We present an experimental realization of this method for pure and mixed state pulsed, single-photon sources.
Additional file 2 of Bioengineered stem cell membrane functionalized nanoparticles combine anti-inflammatory and antimicrobial properties for sepsis treatment
Creators: name: Lu, Lu
name: Quan, Lingli
name: Li, Jian
name: Yuan, Junbin
name: Nie, Xinmin
name: Huang, Xueyuan
name: Dong, Hang
name: Su, Yanrong
name: Huang, Yufen
name: Kou, Qingjie
name: Liu, Leping
name: Liu, Haiting
name: Zhou, Xionghui
name: Gui, Rong
name: Gu, Lan
Publisher: name: figshare
Year: 2023
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Supplementary Material 2
Aspects of Business Development in Rural Areas and Amenity Migration as a Potential for Economic Growth of Rural Area
Creators: name: Vorobljevova, Veronika
name: Novotná, Marie
name: Vorobljevova, Veronika
name: Novotná, Marie
Publisher: name: Unknown
Year: 2020
Subjects: subject: Community/Rural/Urban Development
subject: International Development
subject: Research and Development/Tech Change/Emerging Technologies
subject: amenity migration
subject: rural areas
subject: business in rural areas

description: The concept of this article builds upon works dealing with current issues in the area of forms of business in rural areas, i.e. the theoretical background for research of rural areas from business perspective. Additional sources come from works regarding amenity migration, for it is particularly this group of new residents who can introduce new business directions to rural areas and creatively harness the potential for various economic activities. The objective is to assess the business development opportunities in rural areas and the related influence of amenity migrants. It is necessary to include other aspects in this debate, such as social cohesion, education and economic growth. The basis for the evaluation of the findings of this research consists of structured interviews with members of local and regional authorities, which serve to obtain in-depth and detailed information. The questionnaire is structured in such a way so as not to interfere with the overall quality and value of the research. The results of the research so far confirmed that there is a certain technological development associated with rural areas, be it in areas of transport, communication technologies, digitization, or transformation technologies (Binek, 2007). This fact translates not only into a larger number of job opportunities, but also into a larger space for business, economy, geoFigurey, and sociology (Pato, Teixeira, 2016).
description: DOI:10.30858/RAD/2020/17.0300
Synthetic High-Resolution Line Spectra of Star-Forming Galaxies Below 1200A
Creators: name: Robert, Carmelle
name: Pellerin, Anne
name: Aloisi, Alessandra
name: Leitherer, Claus
name: Hoopes, Charles
name: Heckman, Timothy M.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We have generated a set of far-ultraviolet stellar libraries using spectra of OB and Wolf-Rayet stars in the Galaxy and the Large and Small Magellanic Cloud. The spectra were collected with the Far Ultraviolet Spectroscopic Explorer and cover a wavelength range from 1003.1 to 1182.7A at a resolution of 0.127A. The libraries extend from the earliest O- to late-O and early-B stars for the Magellanic Cloud and Galactic libraries, respectively. Attention is paid to the complex blending of stellar and interstellar lines, which can be significant, especially in models using Galactic stars. The most severe contamination is due to molecular hydrogen. Using a simple model for the H$_2$ line strength, we were able to remove the molecular hydrogen lines in a subset of Magellanic Cloud stars. Variations of the photospheric and wind features of CIII 1176, OVI 1032, 1038, PV 1118, 1128, and SIV 1063, 1073, 1074 are discussed as a function of temperature and luminosity class. The spectral libraries were implemented into the LavalSB and Starburst99 packages and used to compute a standard set of synthetic spectra of star-forming galaxies. Representative spectra are presented for various initial mass functions and star formation histories. The valid parameter space is confined to the youngest ages of less than 10 Myr for an instantaneous burst, prior to the age when incompleteness of spectral types in the libraries sets in. For a continuous burst at solar metallicity, the parameter space is not limited. The suite of models is useful for interpreting the restframe far-ultraviolet in local and high-redshift galaxies.
description: 33 pages including 13 figures, accepted for publication in ApJ
Ethusa hawaiiensis Rathbun 1906
Creators: name: Castro, Peter
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Ethusidae
Ethusa
Ethusa hawaiiensis

description: Ethusa hawaiiensis Rathbun, 1906
 Ethusa mascarone hawaiiensis Rathbun, 1906: 891, fig. 46, pl. 15, fig. 4 [type locality: Pailolo Channel east of Moloka‘i, also from O‘ahu, Hawai‘i; holotype: USNM 29930].
 Additional Hawaiian Is. records:
 Ethusa hawaiiensis Rathbun, 1906 — Castro 2005: 523, figs. 9, 10, 33B [holotype, O‘ahu, Hawai‘i].
 Taxonomy. Castro (2005)
 Geographical distribution. Southwestern Pacific Ocean, Hawaiian Is, French Polynesia.
 Habitat. Bathyal, 200–440 m.
description: Published as part of Castro, Peter, 2011, Catalog of the anomuran and brachyuran crabs (Crustacea: Decapoda: Anomura, Brachyura) of the Hawaiian Islands 2947, pp. 1-154 in Zootaxa 2947 (1) on page 42, DOI: 10.11646/zootaxa.2947.1.1, http://zenodo.org/record/5283044
Undulating dark matter
Creators: name: Davighi, Joe
name: McCullough, Matthew
name: Tooby-Smith, Joseph
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Regular Article - Theoretical Physics
Beyond Standard Model
Cosmology of Theories beyond the SM
CP violation

description: Abstract: We suggest that an interplay between microscopic and macroscopic physics can give rise to dark matter (DM) whose interactions with the visible sector fundamentally undulate in time, independent of celestial dynamics. A concrete example is provided by fermionic DM with an electric dipole moment (EDM) sourced by an oscillating axion-like field, resulting in undulations in the scattering rate. The discovery potential of light DM searches can be enhanced by additionally searching for undulating scattering rates, especially in detection regions where background rates are large and difficult to estimate, such as for DM masses in the vicinity of 1 MeV where DM-electron scattering dominantly populates the single electron bin. An undulating signal could also reveal precious dark sector information after discovery. In this regard we emphasise that, if the recent XENON1T excess of events is due to light DM scattering exothermically off electrons, future analyses of the time-dependence of events could offer clues as to the microscopic origins of the putative signal.
MOESM3 of Development, validation and translation of cardiopulmonary resuscitation and automated external defibrillator training and placement bilingual questionnaire
Creators: name: Chew, Keng
name: Siew Liaw
name: Zahedi, Ahmad Ahmad
name: Shirly Wong
name: Singmamae, Nariman
name: Dev Kaushal
name: Hiang Chan
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Neuroscience
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Plant Biology

description: Additional file 3: Table S2. Criteria for AED placement strategy and the items that measure these criteria.
Reinforcing Edge Computing with Multipath TCP Enabled Mobile Device Clouds
Creators: name: Balasubramanian, Venkatraman
name: Kroep, Kees
name: Joshi, Kishor Chandra
name: Prasad, R. Venkatesha
Publisher: name: arXiv
Year: 2019
Subjects: subject: Networking and Internet Architecture (cs.NI)
subject: FOS: Computer and information sciences

description: In recent years, enormous growth has been witnessed in the computational and storage capabilities of mobile devices. However, much of this computational and storage capabilities are not always fully used. On the other hand, popularity of mobile edge computing which aims to replace the traditional centralized powerful cloud with multiple edge servers is rapidly growing. In particular, applications having strict latency requirements can be best served by the mobile edge clouds due to a reduced round-trip delay. In this paper we propose a Multi-Path TCP (MPTCP) enabled mobile device cloud (MDC) as a replacement to the existing TCP based or D2D device cloud techniques, as it effectively makes use of the available bandwidth by providing much higher throughput as well as ensures robust wireless connectivity. We investigate the congestion in mobile-device cloud formation resulting mainly due to the message passing for service providing nodes at the time of discovery, service continuity and formation of cloud composition. We propose a user space agent called congestion handler that enable offloading of packets from one sub-flow to the other under link quality constraints. Further, we discuss the benefits of this design and perform preliminary analysis of the system.
Horizontally acquired papGII -containing pathogenicity islands underlie the emergence of invasive uropathogenic Escherichia coli lineages
Creators: name: Biggel, Michael
name: Xavier, Basil B.
name: Johnson, James R.
name: Nielsen, Karen L.
name: Frimodt-Møller, Niels
name: Matheeussen, Veerle
name: Goossens, Herman
name: Moons, Pieter
name: Van Puyvelde, Sandra
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article
/631/326/107
/631/326/325/2482
/692/699/255/1318
/692/699/2768/1865
/45
article

description: Abstract: Escherichia coli is the leading cause of urinary tract infection, one of the most common bacterial infections in humans. Despite this, a genomic perspective is lacking regarding the phylogenetic distribution of isolates associated with different clinical syndromes. Here, we present a large-scale phylogenomic analysis of a spatiotemporally and clinically diverse set of 907 E. coli isolates, including 722 uropathogenic E. coli (UPEC) isolates. A genome-wide association approach identifies the (P-fimbriae-encoding) papGII locus as the key feature distinguishing invasive UPEC, defined as isolates associated with severe UTI, i.e., kidney infection (pyelonephritis) or urinary-source bacteremia, from non-invasive UPEC, defined as isolates associated with asymptomatic bacteriuria or bladder infection (cystitis). Within the E. coli population, distinct invasive UPEC lineages emerged through repeated horizontal acquisition of diverse papGII-containing pathogenicity islands. Our findings elucidate the molecular determinants of severe UTI and have implications for the early detection of this pathogen.
Open Sourcing Your Software is Not a Sustainability Strategy – Until it Is!
Creators: name: Bernholdt, David E.
Publisher: name: figshare
Year: 2021
Subjects: subject: 80309 Software Engineering
subject: FOS: Computer and information sciences

description: "When asked how they plan to sustain their software, many (naïve) software developers will say that they plan to make it open source. And that’s often their whole plan..."
A whitepaper presented at the 2019 Collegeville Workshop on Sustainable Scientific Software (CW3S19).
Additional file 11 of gCAnno: a graph-based single cell type annotation method
Creators: name: Yang, Xiaofei
name: Gao, Shenghan
name: Wang, Tingjie
name: Yang, Boyu
name: Dang, Ningxin
name: Ye, Kai
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 11: Figure S7. The overlap of reported marker genes from the corresponding publications in four datasets with selected genes. The circle is selected genes and the square is not selected genes. The marker genes have different color and non-marker genes are gray.