cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Dark trions and biexcitons in WS2 and WSe2 made bright by e-e scattering
Creators: name: Danovich, Mark
name: Zólyomi, Viktor
name: Fal'ko, Vladimir I.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The direct band gap character and large spin-orbit splitting of the valence band edges (at the K and K' valleys) in monolayer transition metal dichalcogenides have put these two-dimensional materials under the spot-light of intense experimental and theoretical studies. In particular, for Tungsten dichalcogenides it has been found that the sign of spin splitting of conduction band edges makes ground state excitons radiatively inactive (dark) due to spin and momentum mismatch between the constituent electron and hole. One might similarly assume that the ground states of charged excitons and biexcitons in these monolayers are also dark. Here, we show that the intervalley K$\leftrightarrows$K' electron-electron scattering mixes bright and dark states of these complexes, and estimate the radiative lifetimes in the ground states of these "semi-dark" trions and biexcitons to be ~ 10ps, and analyse how these complexes appear in the temperature-dependent photoluminescence spectra of WS2 and WSe2 monolayers.
description: 29 pages including supplementary material
Mandarin-speaking children's knowledge of entailments and inferences
Creators: name: Huang, Haiquan
Publisher: name: Macquarie University
Year: 2022
Subjects: Other education not elsewhere classified

description: Human languages contain the ingredients for logical reasoning. Consequently, part of the language acquisition process involves acquiring the meanings of basic logical expressions, and how these expressions interact with one another to yield different kinds of entailments and inferences. A central issue in linguistic research is whether or not children draw upon innate knowledge of logic in assigning meanings to logical expressions. This thesis investigates Mandarin-speaking children's knowledge of the entailments and inferences associated with a number of logical expressions, including the disjunction word huozhe 'or', the deontic modal verb keyi 'is allowed to', the negation markers bu/mei 'not', the focus adverb zhiyou 'only', the universal quantifier dou 'all', the polarity sensitive item renhe 'any' and wh-words like shei 'who'. These experimental investigations focus on three questions: (i) How children interpret simple sentences, i.e., ones with basic logical expressions; (ii) How children interpret complex sentences, i.e., ones that contain a combination of logical expressions; (iii) The extent to which the interpretations of children and adults are the same, or differ. These three questions are addressed in a series of experimental studies of children acquiring Mandarin. Chapter 1 introduces the main questions to be addressed in the thesis. Chapter 2 investigates when OR is assigned a conjunctive inference in child Mandarin. Chapter 3 investigates how Mandarin-speaking children interpret sentences with negation. Chapter 4 explores the meanings children assign to wh-words like shei in declarative and interrogative sentences with the quantificational adverb dou. Chapter 5 summarizes the main findings and discusses their implications for linguistic theory and for language learnability. The experimental findings suggest that although young children interpret certain complex sentences in the same way as adults do, children and adults assign different meanings in some cases. The findings that children differ from adults invite us to conclude that children do not learn logical expressions via adult input, but draw upon innate knowledge of logic -- abstract.
Additional file 2: Figure S1. of Human liver organoids generated with single donor-derived multiple cells rescue mice from acute liver failure
Creators: name: Yun-Zhong Nie
name: Yun-Wen Zheng
name: Ogawa, Miyuki
name: Miyagi, Etsuko
name: Taniguchi, Hideki
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Showing isolation and characterization of endothelial cells (ECs) and mesenchymal cells (MCs) from a single human umbilical cord (UC). A Schematic representation of the process of EC and MC isolation from human UC. B Morphology of UC-derived ECs (passage 1) and MCs (passage 2). C Images of the capillary vascular network formation by con-ECs and UC-ECs on Matrigel matrix. D Proliferation rate of con-ECs (blue, n = 4) and UC-ECs (red, n = 4) after 4 days of culture. E Proliferation rate of con-MCs (blue) and UC-MCs (red) after 4 days of culture. F Flow cytometry analysis of con-EC (one lot) and UC-EC (three donors) surface markers: CD31, CD144, CD146, CD90, CD45, and SSEA4. G Flow cytometry analysis of con-MC (one lot) and UC-MC (three donors) surface markers: CD90, CD73, CD105, CD31, CD45, and HLA-DR. (PDF 477 kb)
Additional file 7: of The neoepitope landscape of breast cancer: implications for immunotherapy
Creators: name: Narang, Pooja
name: Chen, Meixuan
name: Sharma, Amit
name: Anderson, Karen
name: Wilson, Melissa
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Biotechnology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: FOS: Biological sciences
subject: Computational Biology

description: Figure S5. Expressed neoepitopes (FPKM≥5) in subtypes of breast cancer. The range of expressed neoepitopes (with FPKM≥5) is highest for the TNBC, followed by HER-2(+); and lowest for the ER/PR(+)HER-2(−) subtype of breast cancer. The median and range of the number of expressed neoepitopes are: 4 (0–131) in ER/PR(+)HER-2(−), 3 (0–82) in HER-2(+) and 8 (0–230) in TNBC. The number of samples in each case are: 583 (ER/PR(+)HER-2(−)), 138 (HER-2(+)), 92 (TNBC). Significant differences between reported FPKM values are computed pairwise for each breast cancer subtype using a Wilcox rank sum test, *** P < 0.001 (PDF 196 kb)
Privacy versus Convenience: The extent of willingness to share data with smart home devices
Creators: name: Agray, Abir
name: Mahesh, Akshay
name: Öztan, Enes
name: Wodak, David
Publisher: name: Zenodo
Year: 2020
Subjects: Privacy
Convenience
Smart Home Appliances
Data Protection

description: With the increase of smart home devices, the amount of data generated by consumers has increased exponentially in the last few years. This contains mostly personal data which companies make use of to further personalise their services. The question that arises is: to what extent are users willing to sacrifice privacy for more convenience when using smart home devices? By gathering more data about industry 4.0 and smart home devices, a survey was conducted to determine the opinion of Dutch consumers of age between 20 and 30. In this survey, the consumers were asked about their willingness to share personal data with companies, based on the brand image of the company and the convenience it gives them. This study contributes to research by providing insight into the aspects that make a person want to share data with companies through smart home devices.
The Three-Loop Splitting Functions $P_{qg}^{(2)}$ and $P_{gg}^{(2, N_F)}$
Creators: name: Ablinger, J.
name: Behring, A.
name: Blümlein, J.
name: De Freitas, A.
name: von Manteuffel, A.
name: Schneider, C.
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We calculate the unpolarized twist-2 three-loop splitting functions $P_{qg}^{(2)}(x)$ and $P_{gg}^{(2,\rm N_F)}(x)$ and the associated anomalous dimensions using massive three-loop operator matrix elements. While we calculate $P_{gg}^{(2,\rm N_F)}(x)$ directly, $P_{qg}^{(2)}(x)$ is computed from 1200 even moments, without any structural prejudice, using a hierarchy of recurrences obtained for the corresponding operator matrix element. The largest recurrence to be solved is of order 12 and degree 191. We confirm results in the foregoing literature.
description: 38 pages Latex, 2 Figures
Towards multistage modelling of protein dynamics with monomeric Myc oncoprotein as an example
Creators: name: Liu, Jiaojiao
name: Dai, Jin
name: He, Jianfeng
name: Niemi, Antti J.
name: Ilieva, Nevena
Publisher: name: arXiv
Year: 2016
Subjects: subject: Biomolecules (q-bio.BM)
subject: Soft Condensed Matter (cond-mat.soft)
subject: Biological Physics (physics.bio-ph)
subject: FOS: Biological sciences
subject: FOS: Physical sciences

description: We propose to combine a mean field approach with all atom molecular dynamics into a multistage algorithm that can model protein folding and dynamics over very long time periods yet with atomic level precision. As an example we investigate an isolated monomeric Myc oncoprotein that has been implicated in carcinomas including those in colon, breast and lungs. Under physiological conditions a monomeric Myc is presumed to be an example of intrinsically disordered proteins, that pose a serious challenge to existing modelling techniques. We argue that a room temperature monomeric Myc is in a dynamical state, it oscillates between different conformations that we identify. For this we adopt the C-alpha backbone of Myc in a crystallographic heteromer as an initial Ansatz for the monomeric structure. We construct a multisoliton of the pertinent Landau free energy, to describe the C-alpha profile with ultra high precision. We use Glauber dynamics to resolve how the multisoliton responds to repeated increases and decreases in ambient temperature. We confirm that the initial structure is unstable in isolation. We reveal a highly degenerate ground state landscape, an attractive set towards which Glauber dynamics converges in the limit of vanishing ambient temperature. We analyse the thermal stability of this Glauber attractor using room temperature molecular dynamics. We identify and scrutinise a particularly stable subset in which the two helical segments of the original multisoliton align in parallel, next to each other. During the MD time evolution of a representative structure from this subset, we observe intermittent quasiparticle oscillations along the C-terminal alpha-helix, some of which resemble a translating Davydov's Amide-I soliton. We propose that the presence of oscillatory motion is in line with the expected intrinsically disordered character of Myc.
description: 17 figures
Summary statistics from training images as prior information in probabilistic inversion
Creators: name: Lochbühler, T.
name: Vrugt, J. A.
name: Sadegh, M.
name: Linde, N.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Geophysics (physics.geo-ph)
subject: Methodology (stat.ME)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: A strategy is presented to incorporate prior information from conceptual geological models in probabilistic inversion of geophysical data. The conceptual geological models are represented by multiple-point statistics training images (TIs) featuring the expected lithological units and structural patterns. Information from an ensemble of TI realizations is used in two different ways. First, dominant modes are identified by analysis of the frequency content in the realizations, which drastically reduces the model parameter space in the frequency-amplitude domain. Second, the distributions of global, summary metrics (e.g. model roughness) are used to formulate a prior probability density function. The inverse problem is formulated in a Bayesian framework and the posterior pdf is sampled using Markov chain Monte Carlo simulation. The usefulness and applicability of this method is demonstrated on two case studies in which synthetic crosshole ground-penetrating radar traveltime data are inverted to recover 2-D porosity fields. The use of prior information from TIs significantly enhances the reliability of the posterior models by removing inversion artefacts and improving individual parameter estimates. The proposed methodology reduces the ambiguity inherent in the inversion of high-dimensional parameter spaces, accommodates a wide range of summary statistics and geophysical forward problems.
Additional file 11: Table S6. of Global identification, structural analysis and expression characterization of cytochrome P450 monooxygenase superfamily in rice
Creators: name: Kaifa Wei
name: Huiqin Chen
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Marine Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Log-likelihood values and parameters estimates for the CYP72 clan under site-specific models. (PDF 53 kb)
Systematic investigation of the effects of surfactant/salt intermolecular interaction on the interfacial tension of a water/oil system
Creators: name: Lv, Kaihe
name: Huang, Wenjian
name: Wang, Shaoyan
name: Han, Yugui
name: Wang, Qiuxia
name: Sun, Tunan
name: Yan, Hui
name: Jia, Han
Publisher: name: Taylor & Francis
Year: 2019
Subjects: Biochemistry
Biotechnology
Chemical Sciences not elsewhere classified
Biological Sciences not elsewhere classified

description: The organic salt sodium 1-naphthalenesulfonate (SNS) with two conjugated structures was introduced to evaluate its effects on the interfacial activity of three cationic surfactants (1-dodecyl-3-methylimidazolium bromide (M12), N-dodecyl-N-methylpyrrolidinium bromide (L12), and dodecyltrimethylammonium bromide (DTAB)) at water/model oil interface. The intermolecular interactions of surfactants/SNS, mainly including electrostatic attraction and π-π stacking interaction, dominated the amplitudes of IFT reduction. Another three salts and two surfactants were employed in control experiments to demonstrate the essential roles of π-π stacking interaction and electrostatic attraction in the dramatic IFT reduction, respectively. Furthermore, the proposed models about the surfactant/salt interfacial interaction were repeatedly confirmed by the calculations of their interaction energies and the investigations on the effects of NaCl and temperature. In addition, the M12/SNS system with the optimum interfacial activity showed the remarkable ability to improve crude oil recovery.
Overcoming the effects of the Earth's atmosphere on astronomical observations with 3D integrated photonic technologies
Creators: name: Spaleniak, Izabela
Publisher: name: Macquarie University
Year: 2022
Subjects: Other education not elsewhere classified

description: The earth's atmosphere prevents telescopes, astronomical instruments and astrophotonic devices from working at their full capabilities. Atmospheric turbulence introduces wavefront distortions, while hydroxyl molecules in the ozone layer produce strong emission lines in the infrared part of the spectrum. Most techniques to address these problems are inefficient and expensive, forcing the instrumentation to be of large size and cost. By using a femtosecond laser direct-write technique, 3D optical circuitry called photonic lanterns were fabricated. The devices enable the creation of compact optical instruments and integrated photonic devices on ground-based telescopes. The objective of this thesis was to optimise the design of photonic lanterns to increase their efficiency, and create an on-sky prototype instrument to demonstrate the feasibility of the approach. A detailed optimisation of the three main building blocks of photonic lanterns and slit reformatting devices was performed. After optimising design for multimode waveguides, the mode evolution along a transition section between the multimode and isolated single-mode waveguides sections was analysed, and three types and lengths of transition to find the adiabatic regime were studied. An optimal design was identified for which back-to-back photonic lanterns and slit reformatting devices are >90% efficient. In the second part of the thesis, fully integrated photonic lanterns with multiple waveguide Bragg gratings were created. Multiple gratings were placed in the waveguide using the point-by-point femtosecond laser inscription technique. Devices which filter out one, two, three or four wavelengths were fabricated. The best performance was demonstrated by the device with three gratings for wavelengths of 1545 nm, 1552nm and 1559 nm, featuring grating strengths of 5.12 dB, 5.60 dB, and 2.87 dB, respectively. In the third part of the thesis, a slit reformatting device and a single-mode high resolution spectrograph were used to create a prototype on-sky demonstrator instrument and conduct a proof-of-concept test. The astronomical data were acquired on the 0.4m telescope at the Macquarie University Observatory, Sydney. The spectrum of Antares revealed multiple CO band heads in the astronomical H band, as well as sharp atmospheric water absorption lines demonstrating the feasibility of the technique -- abstract.
Dust Attenuation of Star-Forming Galaxies in the First 2Gyr of the Universe
Creators: name: Fudamoto, Yoshinobu
Publisher: name: Zenodo
Year: 2020

description: The development of sensitive mm/submm interferometers (e.g. ALMA, NOEMA) opened a new window to the far infrared (FIR) continuum and emission lines, which enable us to investigate the obscured star-formation activity of galaxies at high redshift. Based on the recent ALMA large program ALPINE (~118 galaxies at z=4.5-5.5), we present new results on the dust attenuation of a large sample of galaxies at z~4.5 - 6.0, and compare them with results from archival ALMA observations at z~3. In particular, we study the relationship between the stellar mass (M*), the UV spectral slope (beta_UV), and the infrared excess (IRX=LIR/LUV). We find that galaxies exhibit significantly lower infrared emission than expected from lower redshift relations, suggesting an evolution of dust continuum emission properties in the first 2 Gyr. Finally, we also discuss our recent NOEMA observations of the [CII] and dust emission of an especially luminous star-forming galaxy at z~11.
Additional file 6: of Meta-analysis of human gene expression in response to Mycobacterium tuberculosis infection reveals potential therapeutic targets
Creators: name: Wang, Zhang
name: Arat, Seda
name: Magid-Slav, Michal
name: Brown, James
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: 60506 Virology

description: Pathway map for “IFN type I signaling pathway”. Significant up-regulation of genes was denoted as up-pointing bars colored in red, and significant down-regulation of genes was denoted as down-pointing bars colored in blue. The length of the colored bar was proportional to the fold change of the gene in the meta-analysis. (PDF 1079 kb)
Exact Feature Distribution Matching for Arbitrary Style Transfer and Domain Generalization
Creators: name: Zhang, Yabin
name: Li, Minghan
name: Li, Ruihuang
name: Jia, Kui
name: Zhang, Lei
Publisher: name: arXiv
Year: 2022
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: Arbitrary style transfer (AST) and domain generalization (DG) are important yet challenging visual learning tasks, which can be cast as a feature distribution matching problem. With the assumption of Gaussian feature distribution, conventional feature distribution matching methods usually match the mean and standard deviation of features. However, the feature distributions of real-world data are usually much more complicated than Gaussian, which cannot be accurately matched by using only the first-order and second-order statistics, while it is computationally prohibitive to use high-order statistics for distribution matching. In this work, we, for the first time to our best knowledge, propose to perform Exact Feature Distribution Matching (EFDM) by exactly matching the empirical Cumulative Distribution Functions (eCDFs) of image features, which could be implemented by applying the Exact Histogram Matching (EHM) in the image feature space. Particularly, a fast EHM algorithm, named Sort-Matching, is employed to perform EFDM in a plug-and-play manner with minimal cost. The effectiveness of our proposed EFDM method is verified on a variety of AST and DG tasks, demonstrating new state-of-the-art results. Codes are available at https://github.com/YBZh/EFDM.
description: To appear in CVPR2022; codes and supplementary material are available at: https://github.com/YBZh/EFDM
Additional file 8: of The neoepitope landscape of breast cancer: implications for immunotherapy
Creators: name: Narang, Pooja
name: Chen, Meixuan
name: Sharma, Amit
name: Anderson, Karen
name: Wilson, Melissa
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Physical Sciences not elsewhere classified
subject: Genetics
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Figure S6. Correlation of number of potential binding neoepitopes with number of expressed (FPKM≥2) neoepitopes. The number of potential binding neoepitopes (IEDB score ≤ 500) are highly correlated with the number of expressed neoepitopes (FPKM≥2) for all three subtypes of breast cancer. In all the plots a linear regression model is used to fit the data; the fitted line is shown in red and 95% CIs are shown in grey (PDF 255 kb)
Wavepacket revivals via complex trajectory propagation
Creators: name: Koch, Werner
name: Tannor, David J.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Complex-valued semiclassical methods hold out the promise of treating classically allowed and classically forbidden processes on the same footing. In addition, they provide a natural way to describe optical excitation with complex fields within the trajectory framework. Despite their promise, these methods have until now been limited to short time propagation, due to the numerical difficulties introduced by the complexification. Using a new Final Value Representation of the Coherent State Propagator (FINCO), combined with an analysis of the complex classical phase space, we achieve accurate wavepacket propagation all the way to the revival time of a strongly anharmonic system.
description: 10 pages, 4 figures
Data Smells in Public Datasets
Creators: name: Shome, Arumoy
name: Cruz, Luis
name: van Deursen, Arie
Publisher: name: arXiv
Year: 2022
Subjects: subject: Software Engineering (cs.SE)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: The adoption of Artificial Intelligence (AI) in high-stakes domains such as healthcare, wildlife preservation, autonomous driving and criminal justice system calls for a data-centric approach to AI. Data scientists spend the majority of their time studying and wrangling the data, yet tools to aid them with data analysis are lacking. This study identifies the recurrent data quality issues in public datasets. Analogous to code smells, we introduce a novel catalogue of data smells that can be used to indicate early signs of problems or technical debt in machine learning systems. To understand the prevalence of data quality issues in datasets, we analyse 25 public datasets and identify 14 data smells.
title: ADCO, Cartulaire de l'abbaye de Cîteaux dit Cartulare Antiquum t.2 (2e moitié XIIIe siècle), Cart. 167 (11 H 67), f. 0091r
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2010
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Cartulaire de l'abbaye de Cîteaux dit Cartulare Antiquum t.2 (2e moitié XIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 167 (11 H 67), f. 0091r, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de l'abbaye de Cîteaux dit Cartulare Antiquum t.2 (2e moitié XIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 167 (11 H 67), f. 0091r, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
MOESM2 of Intrarater reliability of the Humac NORM isokinetic dynamometer for strength measurements of the knee and shoulder muscles
Creators: name: Habets, Bas
name: J. Staal
name: Tijssen, Marsha
name: Cingel, Robert
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Medicine
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Sociology
subject: FOS: Sociology

description: Additional file 2. Mean peak torque valuesÂ ÂąÂ standard deviations for tests and re-tests of the shoulder internal and external rotators.
Uniqueness and characterization theorems for generalized entropies
Creators: name: Enciso, Alberto
name: Tempesta, Piergiulio
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mathematical Physics (math-ph)
subject: Information Theory (cs.IT)
subject: High Energy Physics - Theory (hep-th)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: The requirement that an entropy function be composable is key: it means that the entropy of a compound system can be calculated in terms of the entropy of its independent components. We prove that, under mild regularity assumptions, the only composable generalized entropy in trace form is the Tsallis one-parameter family (which contains Boltzmann-Gibbs as a particular case). This result leads to the use of generalized entropies that are not of trace form, such as Rényi's entropy, in the study of complex systems. In this direction, we also present a characterization theorem for a large class of composable non-trace-form entropy functions with features akin to those of Rényi's entropy.
description: 15 pages, no figures
Topological Modes in a Laser Cavity through Exceptional State Transfer
Creators: name: Schumer, A.
name: Liu, Y. G. N.
name: Leshin, J.
name: Ding, L.
name: Alahmadi, Y.
name: Hassan, A. U.
name: Nasari, H.
name: Rotter, S.
name: Christodoulides, D. N.
name: LiKamWa, P.
name: Khajavikhan, M.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Optics (physics.optics)
subject: Applied Physics (physics.app-ph)
subject: FOS: Physical sciences

description: Shaping the light emission characteristics of laser systems is of great importance in various areas of science and technology. In a typical lasing arrangement, the spatial profile of the mode tends to remain self-similar throughout the cavity. Here, we introduce a paradigm shift where a spatially evolving mode is faithfully settled into a pair of bi-orthogonal states at the two facets of a laser cavity. This is achieved by deliberately eliminating non-adiabatic jumps in a purposely designed structure that features a dynamic encirclement of a non-Hermitian exceptional point. The resulting state transfer reflects the unique topology of the associated Riemann surfaces. Our approach provides a route to develop versatile mode selective active
description: A supplemental file is available on the Journal's website
High power highly stable passively Q-switched fiber laser based on monolayer graphene
Creators: name: Wu, Hanshuo
name: Song, Jiaxin
name: Wu, Jian
name: Xu, Jiangming
name: Xiao, Hu
name: Leng, Jinyong
name: Zhou, Pu
Publisher: name: arXiv
Year: 2017
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We demonstrate a monolayer graphene based passively Q-switched fiber laser with three-stage amplifiers that can deliver over 80 W average power at 1064 nm. The highest average power achieved is 84.1 W, with pulse energy of 1.67 mJ. To the best of our knowledge, this is the first time for a high power passively Q-switched fiber laser in the 1 um range reported so far. More importantly, the Q-switched fiber laser operates stably during a week few-hours-per-a-day tests, which proves the stability and practical application value of graphene in high power pulsed fiber lasers.
description: 9 pages, 5 figures
Synthesis, spectroscopic characterization, DFT calculations, and antimicrobial activities of N-arylsalicylaldiminate derivatives of diorganotin(IV)
Creators: name: Dubey, Raj Kumar
name: Singh, Avadhesh Pratap
name: Jaiswal, Nitesh
name: Singh, Divya Pratap
name: Meenakshi
name: Kushwaha, Ajeet Kumar
name: Kumar, Manoj
name: Anjum, Afreen
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified

description: Equimolar reaction of di-n-butyltin(IV) complexes of bidentate Schiff bases of the type [(n-Bu)2Sn(sb)Cl] with sodium salt of mono-functional bidentate ligands in THF-benzene solution afforded structurally interesting complexes of the type [(n-Bu)2Sn(sb)(L)] (1–6) [where sbH = Schiff bases: N-salicylidene-2-aminopyridine (sapH) I, N-salicylidene-2-methylaminobenzene (o-smabH) II, and N-salicylidene-4-methylaminobenzene (p-smabH) III; LH = mono-functional bidentate ligands, acetylacetone (acacH), ethanolamine (eaH)]. All these colored solid complexes were soluble in common organic solvents and characterized by elemental (C, H, N, and Sn) analysis, spectroscopic techniques [IR, (1H, 13C, and 119Sn) NMR] and mass spectrometry. Thermogravimetric analysis of complexes shows thermal behavior and stability of complexes. Computational studies of the synthesized Schiff bases and their organotin(IV) complexes were carried out using DFT which validate the structure of complexes proposed on the basis of spectroscopic data. The mixed-ligand complexes of diorganotin(IV) and Schiff bases were screened for their antibacterial and antifungal activities.
Structure and Composition of Pluto's atmosphere from the New Horizons Solar Ultraviolet Occultation
Creators: name: Young, Leslie A.
name: Kammer, Joshua A.
name: Steffl, Andrew J.
name: Gladstone, G. Randall
name: Summers, Michael E.
name: Strobel, Darrell F.
name: Hinson, David P.
name: Stern, S. Alan
name: Weaver, Harold A.
name: Olkin, Catherine B.
name: Ennico, Kimberly
name: McComas, David J.
name: Cheng, Andrew F.
name: Gao, Peter
name: Lavvas, Panayotis
name: Linscott, Ivan R.
name: Wong, Michael L.
name: Yung, Yuk L.
name: Cunningham, Nathanial
name: Davis, Michael
name: Parker, Joel Wm.
name: Schindhelm, Rebecca
name: Siegmund, Oswald H. W.
name: Stone, John
name: Retherford, Kurt
name: Versteeg, Maarten
Publisher: name: arXiv
Year: 2017
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: The Alice instrument on NASA's New Horizons spacecraft observed an ultraviolet solar occultation by Pluto's atmosphere on 2015 July 14. The transmission vs. altitude was sensitive to the presence of N2, CH4, C2H2, C2H4, C2H6, and haze. We derived line-of-sight abundances and local number densities for the 5 molecular species, and line-of-sight optical depth and extinction coefficients for the haze. We found the following major conclusions: 1) We confirmed temperatures in Pluto's upper atmosphere that were colder than expected before the New Horizons flyby, with upper atmospheric temperatures near 65-68 K. The inferred enhanced Jeans escape rates were (3e22-7e22) N2/s and (4e25-8e25) CH4/s at the exobase (at a radius of ~2900 km, or an altitude of ~1710 km). 2) We measured CH4 abundances from 80 to 1200 km above the surface. A joint analysis of the Alice CH4 and Alice and REX N2 measurements implied a very stable lower atmosphere with a small eddy diffusion coefficient, most likely between 550 and 4000 cm2/s. Such a small eddy diffusion coefficient placed the homopause within 12 km of the surface, giving Pluto a small planetary boundary layer. The inferred CH4 surface mixing ratio was ~0.28-0.35%. 3) The abundance profiles of the C2Hx hydrocarbons (C2H2, C2H4, C2H6) were not simply exponential with altitude. We detected local maxima in line-of-sight abundance near 410 km altitude for C2H4, near 320 km for C2H2, and an inflection point or the suggestion of a local maximum at 260 km for C2H6. We also detected local minima near 200 km altitude for C2H4, near 170 km for C2H2, and an inflection point or minimum near 170-200 km for C2H6. These compared favorably with models for hydrocarbon production near 300-400 km and haze condensation near 200 km, especially for C2H2 and C2H4 (Wong et al. 2017). 4) We found haze that had an extinction coefficient approximately proportional to N2 density.
PRINCIPLES FOR ASSESSING STUDENTS' WRITING COMPETENCE IN ENGLISH
Creators: name: Ikhtiyorkhojayeva Jamilakhon Rustamjon qizi
Publisher: name: Zenodo
Year: 2025

description: In an increasingly interconnected world, the ability to communicate effectively in a foreign language has become a crucial skill for academic, professional, and personal growth. Among the four core language skills-listening, speaking, reading, and writing-writing is often considered the most challenging to master, as it requires not only linguistic accuracy but also coherence, cohesion, and cultural appropriateness. For foreign language learners, developing writing competence is a complex process that involves acquiring grammatical knowledge, expanding vocabulary, understanding discourse structures, and practicing critical thinking. Traditional language teaching methods often struggle to provide the necessary support for writing development, leading educators to explore innovative pedagogical technologies that can enhance learning outcomes.
Additional file 2: of Perioperative management of antiplatelet therapy in patients undergoing non-cardiac surgery following coronary stent placement: a systematic review
Creators: name: Childers, Christopher
name: Maggard-Gibbons, Melinda
name: Ulloa, Jesus
name: MacQueen, Ian
name: Isomi Miake-Lye
name: Shanman, Roberta
name: Mak, Selene
name: Beroes, Jessica
name: Shekelle, Paul
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Science Policy

description: Search terms. (DOCX 13 kb)
title: ADCO, Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome VI, Cart. 190 (11 H 75), 316 folios, f. 0076v
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome VI, Archives départementales de la Côte-d'Or, Cart. 190 (11 H 75), 316 folios, f. 0076v, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome VI, Archives départementales de la Côte-d'Or, Cart. 190 (11 H 75), 316 folios, f. 0076v, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Query Expansion Based on Crowd Knowledge for Code Search
Creators: name: Nie, Liming
name: Jiang, He
name: Ren, Zhilei
name: Sun, Zeyi
name: Li, Xiaochen
Publisher: name: arXiv
Year: 2017
Subjects: subject: Software Engineering (cs.SE)
subject: FOS: Computer and information sciences

description: As code search is a frequent developer activity in software development practices, improving the performance of code search is a critical task. In the text retrieval based search techniques employed in the code search, the term mismatch problem is a critical language issue for retrieval effectiveness. By reformulating the queries, query expansion provides effective ways to solve the term mismatch problem. In this paper, we propose Query Expansion based on Crowd Knowledge (QECK), a novel technique to improve the performance of code search algorithms. QECK identifies software-specific expansion words from the high quality pseudo relevance feedback question and answer pairs on Stack Overflow to automatically generate the expansion queries. Furthermore, we incorporate QECK in the classic Rocchio's model, and propose QECK based code search method QECKRocchio. We conduct three experiments to evaluate our QECK technique and investigate QECKRocchio in a large-scale corpus containing real-world code snippets and a question and answer pair collection. The results show that QECK improves the performance of three code search algorithms by up to 64 percent in Precision, and 35 percent in NDCG. Meanwhile, compared with the state-of-the-art query expansion method, the improvement of QECK Rocchio is 22 percent in Precision, and 16 percent in NDCG.
description: 14 pages, 5 figures, IEEE Transactions on Services Computing, 2016
Additional file 9: of The neoepitope landscape of breast cancer: implications for immunotherapy
Creators: name: Narang, Pooja
name: Chen, Meixuan
name: Sharma, Amit
name: Anderson, Karen
name: Wilson, Melissa
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology
subject: Computational Biology

description: Figure S7. Expression analysis for the high affinity neoepitopes (FPKM ≥2). (A) The number of the expressed neoepitopes (normalized by total number of samples in each breast cancer subtype) is shown for each FPKM range. 51% (8927/17518) of predicted neoepitopes are expressed with an FPKM threshold of ≥2. (B) Number of neoepitopes (normalized by the number of samples in each breast cancer subtype) with the highest expressed neoepitope for each patient as shown. 93% (762/815) of patients have at least one potential binding epitope. < 1 includes neoepitopes with expression less than 1.0 FPKM (not including 1.0 FPKM), 1–2 includes neoepitopes with expression equal to or greater than one and less than 2 FPKM, and so on, for all categories (PDF 87 kb)
Risk factors for potentially preventable readmissions: a case study of diseases of the circulatory system
Creators: name: Wu, Chengyang
Publisher: name: Macquarie University
Year: 2022
Subjects: Other education not elsewhere classified

description: Potentially preventable hospital readmission rates are considered an important indicator of quality of health care. These re-hospitalisations are likely to be harmful, costly and potentially avoidable. This research identifies the risk factors that cause potentially preventable readmissions. We analysed admissions to hospital of 7,044 patients with a circulatory system disease as principal diagnosis using a health insurance claim database collected between 2010 and 2016. We developed an algorithm that identifies preventable readmissions from the insurance claim records and subsequently a logistic regression model that allows us to identify the risk factors of these potentially preventable readmissions. The analysis gives a specific focus on examining whether cost-based measures can help explain the risk for patients readmit to hospital with preventable reasons. Our findings suggest that patients with circulatory system diseases were more likely to have a potentially preventable hospital readmission if they had one or more of the following factors at the time of the initial admission: being male, more complications (comorbidities) apart from the main diagnosis, stroke conditions, and having procedures of digital subtraction angiography of aorta and lower limb. Importantly, the more doctors charged over the schcduled fees for the medical service associated with a patient's initial admission, the less likely the patient would be readmitted for a preventable reason.
Poroelastic indentation of mechanically confined hydrogel layers
Creators: name: Delavoipière, Jessica
name: Verneuil, Emilie
name: Tran, Yvette
name: Chateauminois, A.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We report on the poroelastic indentation response of hydrogel thin films geometrically confined within contacts with rigid spherical probes of radii in the millimeter range. Poly(PEGMA) (poly(ethylene glycol)) methyl ether methacrylate), poly(DMA) (dimethylacrylamide) and poly(NIPAM) (\textit{N}-isopropylacrylamide) gel films with thickness less than 15 $μ$m were grafted onto glass substrates using a thiol-ene click chemistry route. Changes in the indentation depth under constant applied load were monitored over time as a function of the film thickness and the radius of curvature of the probe using an interferometric method. In addition, shear properties of the indented films were measured using a lateral contact method. In the case of poly(PEGMA) films, we show that poroelastic indentation behavior is adequately described within the framework of an approximate contact model derived within the limits of confined contact geometries. This model provides simple scaling laws for the characteristic poroelastic time and the equilibrium indentation depth. Conversely, deviations from this model are evidenced for poly(DMA) and poly(NIPAM) films. From lateral contact experiments, these deviations are found to result from strong changes in the shear properties as a result of glass transition (poly(DMA)) or phase separation (poly(NIPAM)) phenomena induced by the drainage of the confined films squeezed between the rigid substrates.
Injectable-platelet rich fibrin using the low speed centrifugation concept improves cartilage regeneration when compared to platelet-rich plasma
Creators: name: Raouf, Mustafa Abd El
name: Wang, Xuzhu
name: Miusi, Si
name: Chai, Jihua
name: AbdEl-Aal, Abdel Basit Mohamed
name: Helmy, Mekkawy M. Nefissa
name: Ghanaati, Shahram
name: Choukroun, Joseph
name: Choukroun, Elisa
name: Zhang, Yufeng
name: Miron, Richard J
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Physiology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology

description: The aim of the present study was to evaluate the effect of injectable platelet-rich fibrin (i-PRF) on cultivated chondrocytes and osteochondral regeneration in critical-sized osteochondral defect of the rabbit’s knee in comparison to autologous platelet-rich plasma (PRP). Chondrocytes were first investigated for their ability to proliferate and differentiate in response to PRP and i-PRF. Thereafter, full-thickness critical-sized osteochondral defects 5 mm in diameter and 5 mm in depth were created in the knee joint of 12 adult female New Zealand White rabbits. Defects were regenerated with either PRP or i-PRF and compared to control. Animals were sacrificed at 4 and 12 weeks postoperatively and evaluated histologically by macroscopic and microscopic examination for cartilage regeneration. i-PRF significantly promoted chondrocyte proliferation and mRNA levels of Sox9, collagen type II, and aggrecan when compared to PRP and control. Histological analysis revealed that at 4 weeks, macroscopic ICRS scores from the i-PRF group were significantly enhanced when compared to the PRP and control groups. At 12 weeks post surgery, the microscopic ICRS scores demonstrated that the i-PRF group significantly improved cartilage regeneration when compared to PRP. In conclusion, the use of i-PRF using the low speed centrifugation concept significantly promoted chondrocyte activity and further improved cartilage regeneration when compared to PRP. The histological results revealed early and better cartilage regeneration within 4 weeks postoperatively when i-PRF was utilized and the results were maintained at 12 weeks. Future clinical studies are now needed investigating the regenerative potential of i-PRF in comparison to PRP for knee regeneration.