cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
title: OBSERVATIONS OF CUMULENE CARBENES, H2CCCC AND H2CCC, IN TMC-1
Creators: name: KAWAGUCHI, K
name: KAIFU, N
name: OHISHI, M
name: ISHIKAWA, S
name: HIRAHARA, Y
name: YAMAMOTO, S
name: SAITO, S
name: TAKANO, S
name: MURAKAMI, A
name: VRTILEK, JM
name: GOTTLIEB, CA
name: THADDEUS, P
name: Irvine, William M.
Publisher: name: University of Massachusetts Amherst
Year: 1991
Subjects: subject: DARK CLOUD CHEMISTRY
subject: INTERSTELLAR MOLECULES
subject: TMC-1
subject: Astrophysics and Astronomy

description: The published version is located at http://adsabs.harvard.edu/full/1991PASJ...43..607K
description: http://adsabs.harvard.edu/abs/1991PASJ...43..607K
A Dimensionality Model Approach to Testing and Improving Software Robustness
Creators: name: Jiantao  Pan
name: Koopman, Philip
name: Siewiorek, Daniel
Publisher: name: Carnegie Mellon University
Year: 1999
Subjects: subject: 80399 Computer Software not elsewhere classified
subject: FOS: Computer and information sciences

description: Software robustness problems may hinder the use of Commercial Off-The-Shelf (COTS) software modules and legacy software modules in mission-critical and safety-critical applications. This research focuses on hardening COTS and legacy software modules against robustness failures triggered by exceptional inputs. An automated approach is presented that is capable of identifying the triggers of the robustness failures. A fault model – the Dimensionality Model – is used to guide analysis. An experiment is described which demonstrates the feasibility of automating the process of analyzing failure causes and hardening against certain data types in POSIX function calls, for example, NULL pointer values and scalar data types such as INT and FLOAT. The final goal of this research is to provide users a tool to harden COTS and legacy software modules automatically.
Scaling Molecular Software Testing with Self-Hosted GitHub Actions Runners
Creators: name: Holz, Ethan
name: Swenson, David W.H.
Publisher: name: Zenodo
Year: 2024

description: AbstractMolecular software is beginning to use more GPU-accelerated compute and traditional CI solutions can often be expensive when running longer GPU tests. In order to understand the existing solutions, we reviewed 6 potential self-hosted GitHub Actions Runner candidates[1-6] from a curated list[7]. This poster explains how the Open Molecular Software Foundation (OMSF) seeks to provide a new solution[8] for cloud-based GitHub Actions Runners to make scaling of GPU compute more effective for molecular software. We highlight the long-term community decisions discussed, such as language selection, ability to receive feedback, cloud-agnostic architecture, and ease of maintainability that lead to developing a new solution rather than updating existing tooling.  In addition, we discuss common pitfalls in working with cloud-based infrastructure and how we implemented a testing strategy to mitigate the potential costs of untested infrastructure code.

 

References

[1] Muransky, M (2023) ansible-github_actions_runner (1.18.7)  [Source code]. https://github.com/MonolithProjects/ansible-github_actions_runner 

[2] Young, M (2024) docker-github-actions-runner (Release 2.315.0) [Source code]. https://github.com/myoung34/docker-github-actions-runner

[3] Machula, V (2024) ec2-github-runner (v2.3.6) [Source code]. https://github.com/machulav/ec2-github-runner

[4] GitHub (2024) actions-runner-controller (v0.9.1) [Source code]. https://github.com/actions/actions-runner-controller

[5] Knape, S (2020) github-runner [Source code]. https://github.com/SanderKnape/github-runner

[6] Phillips Labs (2024) terraform-aws-github-runner (v5.9.0) [Source code]. https://github.com/philips-labs/terraform-aws-github-runner 

[7] Nicolai, J (2021) awesome-runner [Online] Available: https://jonico.github.io/awesome-runners/ 

[8] Open Molecular Software Foundation (2024) gha-runner [Source code]. https://github.com/omsf-eco-infra/gha-runner
Fluctuation-dissipation relations in critical coarsening: crossover from unmagnetized to magnetized initial states
Creators: name: Annibale, Alessia
name: Sollich, Peter
Publisher: name: arXiv
Year: 2008
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: We study the non-equilibrium dynamics of the spherical ferromagnet quenched to its critical temperature, as a function of the magnetization of the initial state. The two limits of unmagnetized and fully magnetized initial conditions can be understood as corresponding to times that are respectively much shorter and much longer than a magnetization timescale, as in a recent field theoretical analysis of the $n$-vector model. We calculate exactly the crossover functions interpolating between these two limits, for the magnetization correlator and response and the resulting fluctuation-dissipation ratio (FDR). For $d>4$ our results match those obtained recently from a Gaussian field theory. For $d<4$, non-Gaussian fuctuations arising from the spherical constraint need to be accounted for. We extend our framework from the fully magnetized case to achieve this, providing an exact solution for the relevant integral kernel. The resulting crossover behaviour is very rich, with the asymptotic FDR $X^\infty$ depending non-monotonically on the scaled age of the system. This is traced back to non-monotonicities of the two-time correlator, themselves the consequence of large magnetization fluctuations on the crossover timescale. We correct a trivial error in our earlier calculation for fully magnetized initial states; the corrected FDR is {\em consistent} with renormalization group expansions to first order in $4-d$ for the longitudinal fluctuations of the O(n) model in the limit $n\to\infty$.
description: 34 pages, 10 figures
Network Optimization as a Service with Net2Plan
Creators: name: Garrich, Miquel
name: San Nicolás Martínez, César
name: Moreno-Muro, Francisco Javier
name: Bueno Delgado, María Victoria
name: Pavón Mariño, Pablo
Publisher: name: Zenodo
Year: 2019
Subjects: SDN, NFV, Optimization, API, REST

description: This presentation was used at EuCNC in Valencia, Spain, June 2019. Carrier-grade telecommunication infrastructure must support an ever-increasing traffic volume and dynamicity in operationally-complex networks characterized by multiple domains, multiple technologies and equipment from multiple vendors. At the same time, the advent of Software-Defined Networking (SDN) and Network Function Virtualization (NFV) technologies create transport ecosystems with unprecedented network control and resource dynamicity capabilities. In this context, network optimization is essential to efficiently employ network resources, relying whenever possible on automated procedures and exploiting open application programming interfaces (APIs) inherent of SDN/NFV ecosystems. Automated network optimization procedures on top of network controllers promote a client layer of third-party applications that enable optimization-as-a-service (OaaS) business opportunities. In this paper, we present a network OaaS framework built as an extension of the Net2Plan open-source network planning tool. The proposed framework is based on a classical client-server architecture, and through a REST-based API, holders of network infrastructures (i.e. client role) may request the resolution of a network resource allocation problem through the execution of an algorithmic technique. Thus, third-party players can focus on the development of optimization algorithms (i.e. server role) while potentially providing high-performance computing (HPC) capabilities for their execution. Through the paper, we detail the workflow of the proposed OaaS, illustrate its usage with several use-cases and discuss its applicability in different scenarios.
Inversion of perturbation series
Creators: name: Amore, Paolo
name: Fernandez, Francisco M.
Publisher: name: arXiv
Year: 2007
Subjects: subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: We investigate the inversion of perturbation series and its resummation, and prove that it is related to a recently developed parametric perturbation theory. Results for some illustrative examples show that in some cases series reversion may improve the accuracy of the results.
ALMA Detection of Interstellar Methoxymethanol (CH$_3$OCH$_2$OH)
Creators: name: McGuire, Brett A.
name: Shingledecker, Christopher N.
name: Willis, Eric R.
name: Burkhardt, Andrew M.
name: El-Abd, Samer
name: Motiyenko, Roman A.
name: Brogan, Crystal L.
name: Hunter, Todd R.
name: Margulès, Laurent
name: Guillemin, Jean-Claude
name: Garrod, Robin T.
name: Herbst, Eric
name: Remijan, Anthony J.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We report the detection of interstellar methoxymethanol (CH$_3$OCH$_2$OH) in ALMA Bands 6 and 7 toward the MM1 core in the high-mass star-forming region NGC 6334I at ~0.1" - 1" spatial resolution. A column density of 4(2) x $10^{18}$ cm$^{-2}$ at $T_{ex}$ = 200 K is derived toward MM1, ~34 times less abundant than methanol (CH$_3$OH), and significantly higher than predicted by astrochemical models. Probable formation and destruction pathways are discussed, primarily through the reaction of the CH$_3$OH photodissociation products, the methoxy (CH$_3$O) and hydroxymethyl (CH$_2$OH) radicals. Finally, we comment on the implications of these mechanisms on gas-phase vs grain-surface routes operative in the region, and the possibility of electron-induced dissociation of CH$_3$OH rather than photodissociation.
description: Accepted in Astrophysical Journal Letters
Ising distribution as a latent variable model
Creators: name: Wohrer, Adrien
Publisher: name: arXiv
Year: 2018
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Neurons and Cognition (q-bio.NC)
subject: Machine Learning (stat.ML)
subject: FOS: Physical sciences
subject: FOS: Biological sciences
subject: FOS: Computer and information sciences

description: During the past decades, the Ising distribution has attracted interest in many applied disciplines, as the maximum entropy distribution associated to any set of correlated binary (`spin') variables with observed means and covariances. However, numerically speaking, the Ising distribution is unpractical, so alternative models are often preferred to handle correlated binary data. One popular alternative, especially in life sciences, is the Cox distribution (or the closely related dichotomized Gaussian distribution and log-normal Cox point process), where the spins are generated independently conditioned on the drawing of a latent variable with a multivariate normal distribution. This article explores the conditions for a principled replacement of the Ising distribution by a Cox distribution. It shows that the Ising distribution itself can be treated as a latent variable model, and it explores when this latent variable has a quasi-normal distribution. A variational approach to this question reveals a formal link with classic mean-field methods, especially Opper and Winther's adaptive TAP approximation. This link is confirmed by weak coupling (Plefka) expansions of the different approximations and then by numerical tests. Overall, this study suggests that an Ising distribution can be replaced by a Cox distribution in practical applications, precisely when its parameters lie in the `mean-field domain'.
description: 19 pages, 7 figures
Generalized Arcsine Law and Stable Law in an Infinite Measure Dynamical System
Creators: name: Akimoto, Takuma
Publisher: name: arXiv
Year: 2008
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Limit theorems for the time average of some observation functions in an infinite measure dynamical system are studied. It is known that intermittent phenomena, such as the Rayleigh-Benard convection and Belousov-Zhabotinsky reaction, are described by infinite measure dynamical systems.We show that the time average of the observation function which is not the $L^1(m)$ function, whose average with respect to the invariant measure $m$ is finite, converges to the generalized arcsine distribution. This result leads to the novel view that the correlation function is intrinsically random and does not decay. Moreover, it is also numerically shown that the time average of the observation function converges to the stable distribution when the observation function has the infinite mean.
description: 8 pages, 8 figures
A Near-Infrared Spectroscopic Study of the Accreting Magnetic White Dwarf SDSS J121209.31+013627.7 and its Substellar Companion
Creators: name: Farihi, J.
name: Burleigh, M. R.
name: Hoard, D. W.
Publisher: name: arXiv
Year: 2007
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The nature of the excess near-infrared emission associated with the magnetic white dwarf commonly known as SDSS 1212 is investigated primarily through spectroscopy, and also via photometry. The inferred low mass secondary in this system has been previously detected by the emission and variation of H$α$, and the $1-2.5$ $μ$m spectral data presented here are consistent with the presence of a late L or early T dwarf. The excess flux seen beyond 1.5 $μ$m in the phase-averaged spectrum is adequately modeled with an L8 dwarf substellar companion and cyclotron emission in a 7 MG magnetic field. This interesting system manifests several observational properties typical of polars, and is most likely an old interacting binary with a magnetic white dwarf and a substellar donor in an extended low state.
description: 28 pages, 5 figures, Accepted to ApJ
A Design Space for Adaptive Systems
Creators: name: Brun, Yuriy
name: Desmarais, Ron
name: Geihs, Kurt
name: Litoiu, Marin
name: Lopes, Antonia
name: Shaw, Mary
name: Smit, Michael
Publisher: name: Carnegie Mellon University
Year: 2013
Subjects: subject: 80399 Computer Software not elsewhere classified
subject: FOS: Computer and information sciences

description: Self-adaptive systems research is expanding as systems professionals recognize the importance of automation for managing the growing complexity, scale, and scope of software systems. The current approach to designing such systems is ad hoc, varied, and fractured, often resulting in systems with parts of multiple, sometimes poorly compatible designs. In addition to the challenges inherent to all software, this makes evaluating, understanding, comparing, maintaining, and even using such systems more difficult. This paper discusses the importance of systematic design and identifies the dimensions of the self-adaptive system design space. It identifies key design decisions, questions, and possible answers relevant to the design space, and organizes these into five clusters: observation, representation, control, identification, and enacting adaptation. This characterization can serve as a standard lexicon, that, in turn, can aid in describing and evaluating the behavior of existing and new self-adaptive systems. The paper also outlines the future challenges for improving the design of self-adaptive systems.
title: ADCO, Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Cart. 32 (G 136), 745 folios, f. 1103
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Archives départementales de la Côte-d'Or, Cart. 32 (G 136), 745 folios, f. 1103, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Archives départementales de la Côte-d'Or, Cart. 32 (G 136), 745 folios, f. 1103, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
BtCN-Virome
Creators: name: He, Biao
Publisher: name: figshare
Year: 2023
Subjects: classificationCode: 310706
subject: Virology

description: By profiling 4,143 bat individuals from 40 species, we prepared a compendium of 8,176 viral metagenomes, named BtCN-Virome. It expands the known bat RNA virus diversity by at least 3.4 folds. The data set provides important insights into understanding the diversity and circulation pattern of bat viruses.
Unpacking Digital Public Infrastructure
Creators: name: Dang, Vy
Publisher: name: Zenodo
Year: 2023
Subjects: digitalisation
digitalization
Digital Public Infrastructure
Digital Commons
India
EU
European Union

description: This is a presentation of Vy Dang from the German Institute of Developmnent and Sustainability (IDOS) during her PRODIGEES research secondment to the institute Research and Information System for Developing Countries (RIS) in New Delhi, India.

It highlights the importance of a global consensus on Digital Public Infrastructures (DPIs) to support sustainable development.
Conditioned media from human osteoarthritic synovium induces inflammation in a synoviocyte cell line
Creators: name: Belluzzi, Elisa
name: Olivotto, Eleonora
name: Toso, Giovanna
name: Cigolotti, Augusto
name: Pozzuoli, Assunta
name: Biz, Carlo
name: Trisolino, Giovanni
name: Ruggieri, Pietro
name: Grigolo, Brunella
name: Ramonda, Roberta
name: Favero, Marta
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified

description: Aim: Osteoarthritis (OA) is a whole joint pathology involving cartilage, synovial membrane, meniscus, subchondral bone, and infrapatellar fat pad (IFP). Synovitis has been widely documented in OA suggesting its important role in pathogenesis. The aim of this study was to investigate the role of different joint tissues in promoting synovitis. Materials and methods: Conditioned media (CM) from cartilage, synovial membrane, meniscus, and IFP were generated from tissues of five patients undergoing total knee replacement and used to stimulate a human fibroblast-like synoviocytes cell line (K4IM). Cytokines, chemokines, and metalloproteases release was analyzed in all CM by Bio-Plex Assay and sulfated glycosaminoglycan (GAG) content by dimethylmethylene blue assay. Gene expression of several markers was evaluated by real-time PCR in K4IM cells stimulated with the CM obtained from joint tissues. Results: CM from all tissues produced high levels of IL-6, IL-8, and CCL2. CCL21, MMP-3, and −13 levels were detected in all CM except IFP. MMP-10 was present only in CM of cartilage and synovial tissues. IL-1β, IL-15, TNF-α, CCL5, and CCL19 were undetectable. However, only K4IM cells stimulated by the CM from OA synovium showed an increase of IL-6, CXCL-8, CCL21, MMP10, and IL-1β expression. Conclusion: Our study showed that K4IM might be a suitable in vitro model for evaluating different cellular pathways in OA studies. Importantly, we demonstrated that in OA, all joint tissues might be involved in the progression of synovitis with a predominant role of synovial membrane itself compared to the other joint tissues.
Computational study of the shift of the G band of double-walled carbon nanotubes due to interlayer interactions
Creators: name: Popov, Valentin N.
name: Levshov, Dmitry I.
name: Sauvajol, Jean-Louis
name: Paillet, Matthieu
Publisher: name: arXiv
Year: 2018
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The interactions between the layers of double-walled carbon nanotubes induce measurable shift of the G bands relative to the isolated layers. While experimental data on this shift in free-standing double-walled carbon nanotubes has been reported in the past several years, comprehensive theoretical description of the observed shift is still lacking. The prediction of this shift is important for supporting the assignment of the measured double-walled nanotubes to particular nanotube types. Here, we report a computational study of the G-band shift as a function of the semiconducting inner layer radius and interlayer separation. We find that with increasing interlayer separation, the G band shift decreases, passes through zero and becomes negative, and further increases in absolute value for the wide range of considered inner layer radii. The theoretical predictions are shown to agree with the available experimental data within the experimental uncertainty.
Lettre de Jean-François Séguier à Giovanni Bianchi , 1755-10-14
Creators: name: Séguier, Jean-François
name: Jean-François Séguier
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2021
Subjects: Librairie

description: [transcription] Carissimo Amico

Verona 14 ottobre 1755

Resta fissato pel dì 21 di questo mese la mia partenza da Verona, se il tempo cattivissimo non lo vietasse, di modo che arriverò in Bologna a Dio piacendo il 23. Questo vi serva di avviso.
Ho ricuperate le copie del libro del signor Battarra ieri sera, e il Pasquali mi ha avvisato che aveva ricevuto il denaro di tre, cioè lire 24 che tiene a vostra disposizione. Unito v’era quel piccol plico per l’Hallero, che procurerò d’inviargli. Altro non vi dico perché a bocca presto vi parlerò a lungo e che sono grandemente desideroso di abbracciarvi.

Divotissimo Servitore vostro
Gianfrancesco Séguier

Adresse au vo: All’Illustrissimo Signor Signore e Padrone Colendissimo/il Signore Dottore Giovanni Bianchi Medico/primario di/Rimini
description: [personnes citées] Albrecht von Haller, Giovanni Antonio Battarra, Giovanni Battista Pasquali
description: [reférence bibliographique citée] Battarra, Giovanni Antonio, Fungorum agri Ariminensis historia a J. Antonio Battarra lynceo restituto & in eadem urbe publico philosophiae professore compilata aeneisque tabulis ornata, Fav
description: Source: [lieu de Conservation] Rimini, Biblioteca Gambalunga [cote]Fondo Gambetti, Lettere autografe al Dott. Giovanni Bianchi, pièce 77
Optical properties of gold films and the Casimir force
Creators: name: Svetovoy, V. B.
name: van Zwol, P. J.
name: Palasantzas, G.
name: De Hosson, J. Th. M.
Publisher: name: arXiv
Year: 2008
Subjects: subject: Other Condensed Matter (cond-mat.other)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Precise optical properties of metals are very important for accurate prediction of the Casimir force acting between two metallic plates. Therefore we measured ellipsometrically the optical responses of Au films in a wide range of wavelengths from 0.14 mum to 33 mum. The films at various thickness were deposited at different conditions on silicon or mica substrates. Considerable variation of the frequency dependent dielectric function from sample to sample was found. Detailed analysis of the dielectric functions was performed to check the Kramers-Kronig consistency, and extract the Drude parameters of the films. It was found that the plasma frequency varies in the range from 6.8 eV to 8.4 eV. It is suggested that this variation is related with the film density. X-ray reflectivity measurements support qualitatively this conclusion. The Casimir force is evaluated for the dielectric functions corresponding to our samples, and for that typically used in the precise prediction of the force. The force for our films was found to be 5-14% smaller at a distance of 100 nm between the plates. Noise in the optical data is responsible for the force variation within 1%. It is concluded that prediction of the Casimir force between metals with a precision better than 10% must be based on the material optical response measured from visible to mid-infrared range.
description: 18 pages, 14 figures, accepted for publication in Phys. Rev. B
Limits of Gaudin algebras, quantization of bending flows, Jucys--Murphy elements and Gelfand--Tsetlin bases
Creators: name: Chervov, A.
name: Falqui, G.
name: Rybnikov, L.
Publisher: name: arXiv
Year: 2007
Subjects: subject: Quantum Algebra (math.QA)
subject: High Energy Physics - Theory (hep-th)
subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: FOS: Mathematics
subject: FOS: Physical sciences

description: Gaudin algebras form a family of maximal commutative subalgebras in the tensor product of $n$ copies of the universal enveloping algebra $U(\g)$ of a semisimple Lie algebra $\g$. This family is parameterized by collections of pairwise distinct complex numbers $z_1,...,z_n$. We obtain some new commutative subalgebras in $U(\g)^{\otimes n}$ as limit cases of Gaudin subalgebras. These commutative subalgebras turn to be related to the hamiltonians of bending flows and to the Gelfand--Tsetlin bases. We use this to prove the simplicity of spectrum in the Gaudin model for some new cases.
description: 11 pages, references added
title: NITRIC-OXIDE IN STAR-FORMING REGIONS - FURTHER EVIDENCE FOR INTERSTELLAR N-O BONDS
Creators: name: ZIURYS, LM
name: MCGONAGLE, D
name: MINH, Y
name: Irvine, WM
Publisher: name: University of Massachusetts Amherst
Year: 1991
Subjects: subject: INTERSTELLAR
subject: MOLECULES
subject: NEBULAE
subject: ABUNDANCES
subject: STARS
subject: FORMATION
subject: Astrophysics and Astronomy

description: The published version is located at http://adsabs.harvard.edu/full/1991ApJ...373..535Z
description: Nitric oxide has been newly detected toward several star-forming clouds, including Orion-KL, Sgr B2(N), W33A, W51M, and DR21(OH) via its J = 3/2-1/2 transitions near 150 GHz, using the FCRAO 14 m telescope. Both lambda-doubling components of NO were observed toward all sources. Column densities derived for nitric oxide in these clouds are 10 to the 15th-10 to the 16th/sq cm, corresponding to fractional abundances of 0.5-1.0 x 10 to the -8th, relative to H2. Toward Orion-KL, the NO line profile suggests that the species arises primarily from hot, dense gas. Nitric oxide may arise from warm material toward the other clouds as well. Nitric oxide in star-forming regions could be synthesized by high-temperature reactions, although the observed abundances do not disagree with values predicted from low-temperature, ion-molecule chemistry by more than one order of magnitude.
Unpacking Digital Public Infrastructure and Digital Commons
Creators: name: Dang, Vy
Publisher: name: Zenodo
Year: 2023
Subjects: digitalisation
digitalization
Digital Commons
Digital Public Infrastructure
India
EU
European Union

description: This is a presentation of Vy Dang from the German Institute of Developmnent and Sustainability (IDOS) after her PRODIGEES research secondment to the Research and Information System for Developing Countries (RIS) institute in New Delhi, India.

It emphasises the importance of aligning the perspectives, experiences, and debates surrounding India's Digital Public Infrastructure (DPI) and the Digital Commons in the EU to advance SDGs.
Research Software Engineering As A Service: Scientific Software Engineering Center (SSEC) @ University of Washington
Creators: name: Burggraf, Niki
name: Core, Cordero
Publisher: name: Zenodo
Year: 2024

description: The Scientific Software Engineering Center (SSEC) at the University of Washington’s eScienceInstitute works with researchers across various disciplines to build robust software that bolstersinquiry and builds community. The resulting tools are open source, maintainable and reusable,designed to sustain and lead to scientific breakthroughs.

The poster we propose to present would highlight not just our model of engaging as softwareengineers with the research community, but also highlight several of our successfully graduatedprojects, spanning diverse research domains from neurobiology to seismology to conservationefforts and beyond.

By demonstrating prior successes and discussing how we achieve them, we hope to sparkconversations about our approach to supporting researchers and show an interesting approachto research software engineering.
Additional file 1
Creators: name: Ortiz, Mario
name: Carrasquilla, Maria Cristina
Publisher: name: figshare
Year: 2021
Subjects: subject: 60502 Infectious Agents
subject: FOS: Biological sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Information about primers and probes used in the molecular techniques applied in the study
Optimal estimators in misspecified linear regression model with an application to real-world data
Creators: name: Kayanan, Manickavasagar
name: Wijekoon, Pushpakanthie
Publisher: name: arXiv
Year: 2018
Subjects: subject: Statistics Theory (math.ST)
subject: Methodology (stat.ME)
subject: FOS: Mathematics
subject: FOS: Computer and information sciences
subject: 62J05, 62J07

description: In this article, we propose the Sample Information Optimal Estimator (SIOE) and the Stochastic Restricted Optimal Estimator (SROE) for misspecified linear regression model when multicollinearity exists among explanatory variables. Further, we obtain the superiority conditions of proposed estimators over some other existing estimators in the Mean Square Error Matrix (MSEM) criterion in a standard form which can apply to all estimators considered in this study. Finally, a real world example and a Monte Carlo simulation study are presented for the proposed estimators to illustrate the theoretical results.
description: 18 pages, 8 figures
Development of a Fast Position-Sensitive Laser Beam Detector
Creators: name: Chavez, Isaac
name: Huang, Rongxin
name: Henderson, Kevin
name: Florin, Ernst-Ludwig
name: Raizen, Mark G.
Publisher: name: arXiv
Year: 2008
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: FOS: Physical sciences

description: We report the development of a fast position-sensitive laser beam detector with a bandwidth that exceeds currently available detectors. The detector uses a fiber-optic bundle that spatially splits the incident beam, followed by a fast balanced photo-detector. The detector is applied to the study of Brownian motion of particles on fast time scales with 1 Angstrom spatial resolution. Future applications include the study of molecule motors, protein folding, as well as cellular processes.
Nonlinear polarisation and dissipative correspondence between low frequency fluid and gyrofluid equations
Creators: name: Scott, Bruce D.
Publisher: name: arXiv
Year: 2007
Subjects: subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: The correspondence between gyrofluid and low frequency fluid equations is examined. The lowest order conservative effects in ExB advection, parallel dynamics, and curvature match trivially. The principal concerns are polarisation fluxes, and dissipative parallel viscosity and parallel heat fluxes. The emergence of the polarisation heat flux in the fluid model and its contribution to the energy theorem is reviewed. It is shown that gyroviscosity and the polarisation fluxes are matched by the finite gyroradius corrections to advection in the long wavelength limit, provided that the differences between gyrocenter and particle representations is taken into account. The dissipative parallel viscosity is matched by the residual thermal anisotropy in the gyrofluid model in the collision dominated limit. The dissipative parallel heat flux is matched by the gyrofluid parallel heat flux variables in the collision dominated limit. Hence, the gyrofluid equations are a complete superset of the low frequency fluid equations.
description: RevTeX 4, 28 pages, no figures, final revised version for Physics of Plasmas prior to proof stage
A composable simulation environment for mechatronic systems
Creators: name: Diaz-Calderon, Antonio
name: Paredis, Christiaan J.J.
name: Khosla, Pradeep
Publisher: name: Carnegie Mellon University
Year: 1999
Subjects: subject: 80399 Computer Software not elsewhere classified
subject: FOS: Computer and information sciences

description: We present a software environment for composable simulation of mechatronic systems. By composable simulation we mean the ability to automatically generate simulations from individual component models through manipulation of the corresponding physical components in a CAD system.This form of virtual prototyping will reduce the design cycle significantly by providing immediate feedback to the designer with minimal intervention of simulation and modeling specialists.
KORXONALARDA MEHNATNI TASHKIL ETISH
Creators: name: Rahmatov, Shohjahon
name: Azamov, S.
Publisher: name: Zenodo
Year: 2024

description: Bu maqola korxonalarda mehnat tashkil etishni o‘rganishga bag‘ishlangan. Ushbu maqolada mehnat tashkil etishning asosiy tushunchalari, amaliyot usullari, shuningdek, korxonalarning o‘z faoliyati bo‘yicha muhim tadbirlar keltirib o‘tiladi. Mehnat tashkil etish jarayonining muhim ahamiyati va uning korxonalarda qanday amalga oshirilishi haqida tushunchalar ta'kidlanadi. Maqola, korxonalarning qanday qilib xodimlarni ilg‘or qilish, ularning motivatsiyasini oshirish va yuqori ish faolligini ta'minlashda mehnat tashkil etishning rolini ko‘rsatadi. Maqolada empirik tadqiqotlar, ilmiy tahlillar va korxona boshqaruvchilaridan  olingan ma'lumotlar asosida yozilgan.
title: ADCO, Ordre cistercien : comptes (1499-1515) (11 H 1162), f. 00257
Creators: name: de la Côte-d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2019
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: comptes
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Ordre cistercien : comptes (1499-1515), Archives départementales de la Côte-d'Or, (11 H 1162). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Ordre cistercien : comptes (1499-1515), Archives départementales de la Côte-d'Or, (11 H 1162), f. 00257, in Projet CBMA - Corpus Burgundiae Medii Aevi \[Ressource en ligne\], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
A Comparison of Strategies for Developmental Action Acquisition in QLAP
Creators: name: Mugan, Jonathan
name: Kuipers, Benjamin
Publisher: name: Carnegie Mellon University
Year: 2009
Subjects: subject: 80399 Computer Software not elsewhere classified
subject: FOS: Computer and information sciences

description: An important part of development is acquiring actions to interact with the environment. We have developed a computational model of autonomous action acquisition, called QLAP. In this paper we investigate different strategies for developmental action acquisition within this model. In particular, we introduce a way to actively learn actions and we compare this active action acquisition with passive learning of actions. We also compare curiosity based exploration with random exploration. And finally, we examine the effects of resource restrictions on the agent’s ability to learn actions.
A Fiji pipeline to segment 3D objects and retrieve shape parameters in biomedical images
Creators: name: Matthieu, Chourrout
name: Roux Margaux
name: Gislard Coralie
name: Ignacio, Arganda-Carreras
name: David, Legland
name: Hugo, Rositi
name: Marlène, Wiart
name: Fabien, Chauveau
Publisher: name: Zenodo
Year: 2021
Subjects: Fiji
shape parameters
WEKA

description: Biologists often lack image processing tools that are easy to understand and to adjust to their specific problem. With that in mind, we established a detailed modus operandi, based on free open-source programs. It involves a trainable algorithm: this kind of algorithms are best suited to extract elements that are not easily distinguishable (including non-specific signal intensity, varying textures, etc.). In our case, it was designed to assess the morphology of amyloid-β plaques in transgenic mice, which are rodent models for Alzheimer’s disease. The images were acquired as X-Ray Phase Contrast Tomography (XPCT) on synchrotron beamlines. Our Fiji pipeline was built with the following plugins: segmentation editor (to isolate hippocampus), trainable WEKA segmentation 3D (to identify plaques), MorpholibJ and 3D ImageJ suite (to label objects and extract relevant shape parameters). Since these plugins were not developed for this specific application, the present pipeline is likely to be well-suited for any morphometric analysis of small 3D objects.
title: 02_0935
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
Development and cytotoxic response of two proliferative MDA- MB-231 and non-proliferative SUM1315 three-dimensional cell culture models of triple-negative basal-like breast cancer cell lines
Creators: name: Dubois, Clémence
name: Robin, Dufour
name: Pierre, Daumar
name: Corinne, Aubel
name: Claire, Szczepaniak
name: Christelle, Blavignac
name: Emmanuelle, Mounetou
name: Frédérique, Penault-Llorca
name: Bamdad, Mahchid
Publisher: name: arXiv
Year: 2017
Subjects: subject: Cell Behavior (q-bio.CB)
subject: FOS: Biological sciences

description: Triple-Negative Basal-Like tumors, representing 15 to 20% of breast cancers, are very aggressive and with poor prognosis. Targeted therapies have been developed extensively in preclinical and clinical studies to open the way for new treatment strategies. The present study has focused on developing 3D cell cultures from SUM1315 and MDA-MB-231, two triple-negative basal-like (TNBL) breast cancer cell lines, using the liquid overlay technique. Extracellular matrix concentration, cell density, proliferation, cell viability, topology and ultrastructure parameters were determined. The results showed that for both cell lines, the best conditioning regimen for compact and homogeneous spheroid formation was to use 1000 cells per well and 2% Geltrex. This conditioning regimen highlighted two 3D cell models: non-proliferative SUM1315 spheroids and proliferative MDA-MB-231 spheroids. In both cell lines, the comparison of 2D vs 3D cell culture viability in the presence of increasing concentrations of chemotherapeutic agents i.e. cisplatin, docetaxel and epirubicin, showed that spheroids were clearly less sensitive than monolayer cell cultures. Moreover, a proliferative or non-proliferative 3D cell line property would enable determination of cytotoxic and/or cytostatic drug activity. 3D cell culture could be an excellent tool in addition to the arsenal of techniques currently used in preclinical studies. http://www.impactjournals.com/oncotarget/ Oncotarget, Advance Publications 2017
description: Oncotarget, Impact journals, 2017
Student Research Software Engineers: Insights from Macro and Micro Perspectives
Creators: name: Kershaw, Helen
name: Do, Virginia
Publisher: name: Zenodo
Year: 2024

description: Student opportunities are important for diversifying RSE and getting students hooked on research software engineering. Engaging with undergraduate and graduate students interested in scientific computing is both rewarding and beneficial to the RSE community, given there is not yet a clear academic curriculum nor career path to becoming a research software engineer. This talk will cover the macro aspects of RSE internships through the lens of SIParCS, a successful, long running internship program, and deep-dive into the micro aspects of working with student RSEs by sharing experiences at DART, an open source project at the intersection of science and software.

We’ll give a lightning overview of the 17 years of SIParCS, the Summer Internships in Parallel Computational Science at the NSF National Center for Atmospheric Research, including background, history and motivations. SIParCS provides opportunities for undergraduate and graduate students to gain hands-on experience in computational science, particularly focusing on high-performance computing, scientific computing, and data analysis. The program’s goal is to develop and diversify the next generation of computational scientists and engineers by offering holistic mentorship, professional development, and the chance to work on cutting-edge projects alongside experienced researchers.

DART, the Data Assimilation Testbed, has been fortunate to have various interns though SIParCS as well as part-time student RSE employees working year-round. We'll share our specific experiences, challenges and triumphs, working with student RSEs. What worked, what didn’t, and how summer internship RSEs differ from year-round part-time student RSEs. Everyone is different, what motivates and incentivizes people varies from person to person, and can change over time. People’s time has value, we want people spending that time on the most interesting and impactful thing they can be working on. Working with students requires a balance between getting quality work from them, and the students finding benefit in this work and progressing their career. We'll conclude with thoughts on future student interactions and possible community collaborations.
A Comparative Study of Online Privacy Policies and Formats
Creators: name: Aleecia M. McDonald
name: Reeder, Robert W.
name: Kelley, Patrick Gage
name: Cranor, Lorrie
Publisher: name: Carnegie Mellon University
Year: 2009
Subjects: subject: 80399 Computer Software not elsewhere classified
subject: FOS: Computer and information sciences

description: Online privacy policies are difficult to understand. Most privacy policies require a college reading level and an ability to decode legalistic, confusing, or jargon-laden phrases. Privacy researchers and industry groups have devised several standardized privacy policy formats to address these issues and help people compare policies. We evaluated three formats in this paper: layered policies, which present a short form with standardized components in addition to a full policy; the Privacy Finder privacy report, which standardizes the text descriptions of privacy practices in a brief bulleted format; and conventional non-standardized human-readable policies. We contrasted six companies’ policies, deliberately selected to span the range from unusually readable to challenging. Based on the results of our online study of 749 Internet users, we found participants were not able to reliably understand companies’ privacy practices with any of the formats. Compared to natural language, participants were faster with standardized formats but at the expense of accuracy for layered policies. Privacy Finder formats supported accuracy more than natural language for harder questions. Improved readability scores did not translate to improved performance. All formats and policies were similarly disliked. We discuss our findings as well as public policy implications.
Liquid crystal anchoring transitions on aligning substrates processed by plasma beam
Creators: name: Yaroshchuk, Oleg V.
name: Kiselev, Alexei D.
name: Kravchuk, Ruslan M.
Publisher: name: arXiv
Year: 2007
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We observe a sequence of the anchoring transitions in nematic liquid crystals (NLC) sandwiched between the hydrophobic polyimide substrates treated with the plasma beam. There is a pronounced continuous transition from homeotropic to low tilted (nearly planar) alignment with the easy axis parallel to the incidence plane of the plasma beam (the zenithal transition) that takes place as the exposure dose increases. In NLC with positive dielectric anisotropy, a further increase in the exposure dose results in in-plane reorientation of the easy axis by 90 degrees (the azimuthal transition). This transition occurs through the two-fold degenerated alignment characteristic for the second order anchoring transitions. In contrast to critical behavior of anchoring, the contact angle of NLC and water on the treated substrates monotonically declines with the exposure dose. It follows that the surface concentration of hydrophobic chains decreases continuously. The anchoring transitions under consideration are qualitatively interpreted by using a simple phenomenological model of competing easy axes which is studied by analyzing anchoring diagrams of the generalized polar and non-polar anchoring models.
description: revtex4, 18 pages, 10 figures