title: Designing and Encoding Scenario-based Expert Elicitation for Large Conditional Probability Tables
Creators: name: Alkhairy, Ibrahim H
Publisher: name: Griffith University
Year: 2020
Subjects: subject: Bayesian networks
subject: Sensitivity analysis
subject: Large computer modelling experiments
subject: Design of experiment
subject: Bayesian GLM
subject: CPT Calculator
subject: Outside-in method
subject: Species distribution model
subject: Informative priors
subject: Uncertainty

description: This thesis focuses on the general problem of asking experts to assess the likelihood of many scenarios, when there is insufficient time to ask about all possible scenarios. The challenge addressed here is one of experimental design: How to choose which scenarios are assessed; How to use that limited data to extrapolate information about the scenarios that remain unasked? In a mathematical sense, this problem can be constructed as a problem of expert elicitation, where experts are asked to quantify conditional probability tables (CPTs). Experts may be relied on, for example in the situation when empirical data is unavailable or limited. CPTs are used widely in statistical modelling to describe probabilistic relationships between an outcome and several factors. I consider two broad situations where CPTs are important components of quantitative models. Firstly experts are often asked to quantify CPTs that form the building blocks of Bayesian Networks (BNs). In one case study, CPTs describe how habitat suitability of feral pigs is related to various environmental factors, such as water quality and food availability. Secondly CPTs may also support a sensitivity analysis for large computer experiments, by examining how some outcome changes, as various factors are changed. Another case study uses CPTs to examine sensitivity to settings, for algorithms available through virtual laboratories, to map the geographic distribution of species such as the koala. An often-encountered problem is the sheer amount of information asked of the expert: the number of scenarios. Each scenario corresponds to a row of the CPT, and concerns a particular combination of factors, and the likely outcome. Currently most researchers arrange elicitation of CPTs by keeping the number of rows and columns in the CPT to a minimum, so that they need ask experts about no more than twenty or so scenarios. However in some practical problems, CPTs may need to involve more rows and columns, for example involving more than two factors, or factors which can take on more than two or three possible values. Here we propose a new way of choosing scenarios, that underpin the elicitation strategy, by taking advantage of experimental design to: ensure adequate coverage of all scenarios; and to make best use of the scarce resources like the valuable time of the experts. I show that this can be essentially constructed as a problem of how to better design choice of scenarios to elicit from a CPT. The main advantages of these designs is that they explore more of the design space compared to usual design choices like the one-factor-at-a-time (OFAT) design that underpins the popular encoding approach embedded in “CPT Calculator”. In addition this work tailors an under-utilized scenario-based elicitation method to ensure that the expert’s uncertainty was captured, together with their assessments, of the likelihood of each possible outcome. I adopt the more intuitive Outside-In Elicitation method to elicit the expert’s plausible range of assessed values, rather than the more common and reverse-order approach of eliciting their uncertainty around their best guess. Importantly this plausible range of values is more suitable for input into a new approach that was proposed for encoding scenario-based elicitation: Bayesian (rather than a Frequentist) interpretation. Whilst eliciting some scenarios from large CPTs, another challenge arises from the remaining CPT entries that are not elicited. This thesis shows how to adopt a statistical model to interpolate not only the missing CPT entries but also quantify the uncertainty for each scenario, which is new for these two situations: BNs and sensitivity analyses. For this purpose, I introduce the use of Bayesian generalized linear models (GLMs). The Bayesian updating framework also enables us to update the results of elicitation, by incorporating empirical data. The idea is to utilise scenarios elicited from experts to constructan informative Bayesian “prior” model. Then the prior information (e.g. about scenarios) is combined with the empirical data (e.g. from computer model runs), to update the posterior estimates of plausible outcomes (affecting all scenarios). The main findings showed that Bayesian inference suits the small data problem of encoding the expert’s mental model underlying their assessments, allowing uncertainty to vary about each scenario. In addition Bayesian inference provides rich feedback to the modeller and experts on the plausible influence of factors on the response, and whether any information was gained on their interactions. That information could be pivotal to designing the next phase of elicitation about habitat requirements or another phase of computer models. In this way, the Bayesian paradigm naturally supports a sequential approach to gradually accruing information about the issue at hand. As summarised above, the novel statistical methodology presented in this thesis also contributes to computer science. Specifically computation for Bayesian Networks and sensitivity analyses of large computer experiments can be re-designed to be more efficient. Here the expert knowledge is useful to complement the empirical data to inform a more comprehensive analyses.