cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
MOESM1 of Role of mitochondria and cardiolipins in growth inhibition of breast cancer cells by retinoic acid
Creators: name: Terao, Mineko
name: Goracci, Laura
name: Celestini, Valentina
name: Kurosaki, Mami
name: Bolis, Marco
name: Veroli, Alessandra Di
name: Vallerga, Arianna
name: Fratelli, Maddalena
name: Lupi, Monica
name: Corbelli, Alessandro
name: Fiordaliso, Fabio
name: Gianni, Maurizio
name: Paroni, Gabriela
name: Zanetti, Adriana
name: Cruciani, Gabriele
name: Garattini, Enrico
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Cell Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Figures S1-S12. Supplementary Information, Supplementary Methods, Supplementary References.
Additional file 1 of Contextual reprogramming of CAR-T cells for treatment of HER2+ cancers
Creators: name: Yang, Zhifen
name: Li, Lingyu
name: Turkoz, Ahu
name: Chen, Pohan
name: Harari-Steinfeld, Rona
name: Bobbin, Maggie
name: Stefanson, Ofir
name: Choi, Hana
name: Pietrobon, Violena
name: Alphson, Bennett
name: Goswami, Angshumala
name: Balan, Vitaly
name: Kearney, Alper
name: Patel, Dharmesh
name: Yang, Jin
name: Inel, Damla
name: Vinod, Veena
name: Cesano, Alessandra
name: Wang, Bing
name: Roh, Kyung-Ho
name: Qi, Lei S.
name: Marincola, Francesco M.
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Figure S1. A Comparative assessment of expression of HER2 CAR according to the anti-4D5 epitope idiotype antibody recognizing HER2 directly compared to the detection of the tNGFR tag. The latter, is a preferred method for sorting and phenotyping of cells since it has no direct biological effect on T cell activation/function. B Kinetics of expression of dCas9 and Q8 by qPCR. C CAR-T manufacturing process—CD3+ T cells are negatively selected from peripheral blood monocytes and stimulated with OKT3/CD28. LdCK is added for transduction a day later followed on the second day by HER2-TEV. Five days after the original stimulation the activation is removed and on the following day cells are sorted to enrich the tNGFR+/Q8+ population. The expansion is then continued till time of release between day 14 of production. Cells are also tested at that point for permanence of transduction as shown in Fig. 1A.
Analyzing the link between ageism and frailty among older people: a quantitative systematic review
Creators: name: Aminu, Abodunrin
Publisher: name: Zenodo
Year: 2020

description: This presentation is one of the EuroAgeism Panel Presentations at the Aging & Social Change: Tenth Interdisciplinary Conference 2020 Special Focus—New Ageism in Times of Pandemic: Tensions between Active Aging and Risk-Group Definitions
Additional file 3 of Breaking the paradigms of residual categories and neglectable importance of non-used resources: the “vital” traditional knowledge of non-edible mushrooms and their substantive cultural significance
Creators: name: Ramírez-Terrazo, Amaranta
name: E. Adriana Montoya
name: Garibay-Orijel, Roberto
name: Caballero-Nieto, Javier
name: Kong-Luz, Alejandro
name: Méndez-Espinoza, Claudia
Publisher: name: figshare
Year: 2021
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Plant Biology

description: Additional file 3. Cultural importance of non-edible mushrooms in San Isidro Buensuceso
Weak approximate unitary designs and applications to quantum encryption
Creators: name: Lancien, Cécilia
name: Majenz, Christian
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: Cryptography and Security (cs.CR)
subject: Functional Analysis (math.FA)
subject: Probability (math.PR)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences
subject: FOS: Mathematics

description: Unitary $t$-designs are the bread and butter of quantum information theory and beyond. An important issue in practice is that of efficiently constructing good approximations of such unitary $t$-designs. Building on results by Aubrun (Comm. Math. Phys. 2009), we prove that sampling $d^t\mathrm{poly}(t,\log d, 1/ε)$ unitaries from an exact $t$-design provides with positive probability an $ε$-approximate $t$-design, if the error is measured in one-to-one norm distance of the corresponding $t$-twirling channels. As an application, we give a partially derandomized construction of a quantum encryption scheme that has roughly the same key size and security as the quantum one-time pad, but possesses the additional property of being non-malleable against adversaries without quantum side information.
description: 20 pages. Published version
Data-driven model reduction, Wiener projections, and the Koopman-Mori-Zwanzig formalism
Creators: name: Lin, Kevin K.
name: Lu, Fei
Publisher: name: arXiv
Year: 2019
Subjects: subject: Numerical Analysis (math.NA)
subject: Computational Physics (physics.comp-ph)
subject: Machine Learning (stat.ML)
subject: FOS: Mathematics
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: Model reduction methods aim to describe complex dynamic phenomena using only relevant dynamical variables, decreasing computational cost, and potentially highlighting key dynamical mechanisms. In the absence of special dynamical features such as scale separation or symmetries, the time evolution of these variables typically exhibits memory effects. Recent work has found a variety of data-driven model reduction methods to be effective for representing such non-Markovian dynamics, but their scope and dynamical underpinning remain incompletely understood. Here, we study data-driven model reduction from a dynamical systems perspective. For both chaotic and randomly-forced systems, we show the problem can be naturally formulated within the framework of Koopman operators and the Mori-Zwanzig projection operator formalism. We give a heuristic derivation of a NARMAX (Nonlinear Auto-Regressive Moving Average with eXogenous input) model from an underlying dynamical model. The derivation is based on a simple construction we call Wiener projection, which links Mori-Zwanzig theory to both NARMAX and to classical Wiener filtering. We apply these ideas to the Kuramoto-Sivashinsky model of spatiotemporal chaos and a viscous Burgers equation with stochastic forcing.
description: Substantial revisions, including additional references. To appear in Journal of Computational Physics
MOESM1 of Strong selection pressures maintain divergence on genomic islands in Atlantic cod (Gadus morhua L.) populations
Creators: name: Rodríguez-Ramilo, Silvia
name: Baranski, Matthew
name: Moghadam, Hooman
name: Grove, Harald
name: Lien, Sigbjørn
name: Goddard, Mike
name: Meuwissen, Theo
name: Sonesson, Anna
Publisher: name: figshare
Year: 2019
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Additional file 1: Figure S1. Patterns of coancestry ( $$f$$ f ) in all chromosomes (except 1, 2, 7 and 12) for the CC, NEAC, CC × NEAC and $$ f_{{{\text{CC}}\;{\&}\;NEAC}} $$ f CC & N E A C populations. The data provided represent values of coancestry smoothed by using a sliding window approach. Figure S2. Genetic differentiation coefficients ( $$F$$ F ST) between populations CC and NEAC in all chromosomes (except 1, 2, 7 and 12). The showed values are genetic differentiation coefficients smoothed by using a sliding window approach. Figure S3. Private allele frequency in populations CC (left column) and NEAC (right column) in all chromosomes (except 1, 2, 7 and 12). A sliding window approach was used to smooth the private allele frequency. Figure S4. Principal components analysis in populations CC and NEAC in all chromosomes (except 1, 2, 7 and 12). First two principal components on the SNP data available.
Not all stars form in clusters -- $Gaia$-DR2 uncovers the origin of OB associations
Creators: name: Ward, Jacob L.
name: Kruijssen, J. M. Diederik
name: Rix, Hans-Walter
Publisher: name: arXiv
Year: 2019
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Historically, it has often been asserted that most stars form in compact clusters. In this scenario, present-day gravitationally-unbound OB associations are the result of the expansion of initially gravitationally-bound star clusters. However, this paradigm is inconsistent with recent results, both theoretical and observational, that instead favour a hierarchical picture of star formation in which stars are formed across a continuous distribution of gas densities and most OB associations never were bound clusters. Instead they are formed in-situ as the low-density side of this distribution, rather than as the remnants of expanding clusters. We utilise the second $Gaia$ data release to quantify the degree to which OB associations are undergoing expansion and, therefore, whether OB associations are the product of expanding clusters, or whether they were born in-situ, as the large-scale, globally-unbound associations that we see today. We find that the observed kinematic properties of associations are consistent with highly substructured velocity fields and additionally require some degree of localised expansion from sub-clusters within the association. While most present-day OB associations do exhibit low levels of expansion, there is no significant correlation between radial velocity and radius. Therefore, the large-scale structure of associations is not set by the expansion of clusters, rather it is a relic of the molecular gas cloud from which the association was formed. This finding is inconsistent with a monolithic model of association formation and instead favours a hierarchical model, in which OB associations form in-situ, following the fractal structure of the gas from which they form.
description: 24 pages, 12 figures, accepted for publication in MNRAS
On the calculation of quantum mechanical electron transfer rates
Creators: name: Lawrence, Joseph E.
name: Fletcher, Theo
name: Lindoy, Lachlan P.
name: Manolopoulos, David E.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: We present a simple interpolation formula for the rate of an electron transfer reaction as a function of the electronic coupling strength. The formula only requires the calculation of Fermi Golden Rule and Born-Oppenheimer rates and so can be combined with any methods that are able to calculate these rates. We first demonstrate the accuracy of the formula by applying it to a one dimensional scattering problem for which the exact quantum mechanical, Fermi Golden Rule, and Born-Oppenheimer rates are readily calculated. We then describe how the formula can be combined with the Wolynes theory approximation to the Golden Rule rate, and the ring polymer molecular dynamics (RPMD) approximation to the Born-Oppenheimer rate, and used to capture the effects of nuclear tunnelling, zero point energy, and solvent friction on condensed phase electron transfer reactions. Comparison with exact hierarchical equations of motion (HEOM) results for a demanding set of spin-boson models shows that the interpolation formula has an error comparable to that of RPMD rate theory in the adiabatic limit, and that of Wolynes theory in non-adiabatic limit, and is therefore as accurate as any method could possibly be that attempts to generalise these methods to arbitrary electronic coupling strengths.
description: 17 pages, 5 figures
MOESM1 of Mass campaigns combining antimalarial drugs and anti-infective vaccines as seasonal interventions for malaria control, elimination and prevention of resurgence: a modelling study
Creators: name: Camponovo, Flavia
name: Ockenhouse, Chris
name: Lee, Cynthia
name: Penny, Melissa
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Table S1. Overview of the input parameter values for the simulations and the direct outputs measured. Table S2. Overview of the main and supplementary simulated strategies. Figure S1. Single simulation examples of estimated continuous all age prevalence following different intervention. Figure S2. Median and range of estimated yearly average all age prevalence following different intervention strategies. Figure S3. Relative impact of combined strategies for different coverage levels of each intervention. Figure S4. Relative maximum prevalence reached depending on intervention coverage. Figure S5. Impact of mass vaccination compared to MDA with same coverage levels comparing strategies 3 and 4 with strategy 1 and 2. Table S3. Risk of resurgence [%] for different deployment strategies. Table S4. Risk of resurgence [%] for different deployment strategies, with reduced coverage of mass vaccination. Table S5. Predicted risk of resurgence [%] for different strategies at low prevalence levels (PfPR2â 10 1 to 5%) for different levels of case management and intervention coverage. Figure S6. Interruption of transmission for different strategies with lower case management. Figure S7. Interruption of transmission and synergism for different combined strategies with simultaneous MDA and mass vaccination interventions delivered to the same proportion of the population given coverage. Figure S8. Interruption of transmission for mass vaccination and combined strategies with lower vaccine efficacy. Figure S9. Synergy coefficient between mass vaccination and mass drug administration in the probability to interrupt transmission. Table S6. Estimated resurgence parameters for 2â years deployment of MDA, mass vaccination, or combination of both MDA and mass vaccination, including 2 rates of imported infections. Figure S10. Relationship between entomological inoculation rate, EIR, and effective access to care, E14, with PfPR2â 10 and prevalence in all population.
A Primal-Dual Parallel Approximation Technique Applied to Weighted Set and Vertex Cover
Creators: name: Khuller, Samir
name: Vishkin, Uzi
name: Young, Neal
Publisher: name: arXiv
Year: 2002
Subjects: subject: Data Structures and Algorithms (cs.DS)
subject: Distributed, Parallel, and Cluster Computing (cs.DC)
subject: FOS: Computer and information sciences
subject: F.2.0; G.1.6; C.2.4

description: The paper describes a simple deterministic parallel/distributed (2+epsilon)-approximation algorithm for the minimum-weight vertex-cover problem and its dual (edge/element packing).
description: conference version appeared in IPCO'93
Additional file 1 of Protocol for a feasibility study incorporating a randomised pilot trial with an embedded process evaluation and feasibility economic analysis of ThinkCancer!: a primary care intervention to expedite cancer diagnosis in Wales
Creators: name: Disbeschl, Stefanie
name: Surgey, Alun
name: Roberts, Jessica L.
name: Hendry, Annie
name: Lewis, Ruth
name: Goulden, Nia
name: Hoare, Zoe
name: Nefyn Williams
name: Anthony, Bethany Fern
name: Edwards, Rhiannon Tudor
name: Rebecca-Jane Law
name: Hiscock, Julia
name: Carson-Stevens, Andrew
name: Neal, Richard D.
name: Wilkinson, Clare
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1:. WHO Trial Registration Data Set.
Additional file 2 of Contextual reprogramming of CAR-T cells for treatment of HER2+ cancers
Creators: name: Yang, Zhifen
name: Li, Lingyu
name: Turkoz, Ahu
name: Chen, Pohan
name: Harari-Steinfeld, Rona
name: Bobbin, Maggie
name: Stefanson, Ofir
name: Choi, Hana
name: Pietrobon, Violena
name: Alphson, Bennett
name: Goswami, Angshumala
name: Balan, Vitaly
name: Kearney, Alper
name: Patel, Dharmesh
name: Yang, Jin
name: Inel, Damla
name: Vinod, Veena
name: Cesano, Alessandra
name: Wang, Bing
name: Roh, Kyung-Ho
name: Qi, Lei S.
name: Marincola, Francesco M.
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2: Figure S2. A Antigen density-dependent activation of HER2 CAR—conventional HER2 CAR cells were stimulated with beads coated with BSA, low or high densities of HER2 ectodomain (Low HER2 and High HER2) at indicated beads to CAR-T cells ratio for expression of CD69 and PD-1 at day 3 following stimulation. B Cytotoxic and expansion properties of RB-340-1 cellular components—non-transduced (NT), conventional HER2 CAR, cRB-340-1 and RB-340-1 T cells were exposed for 3 days to FaDu cell line at 1:20 effector to target ratio. Different proportion of CD4+/CD8+ T cells were tested for cytotoxic activity (upper panel) and expansion (lower panel). The numbers in the headline refer to the proportion of CD4+ T cells (%) present in each group over total number of T cells. C RB-340-1 specificity of gene regulation—primary T cells transduced with LdCK plus HER2-TEV constructs including either PD-1sg, TIM-3sg or both were tested for expression of the respective target genes 5 days after stimulation with FaDu cells to induce the expression of the two checkpoints. D Kinetics of gene-expression regulation by RB-340-1—RB-340-1 (red line) and cRB-340-1 (black line) were stimulated with HER2-coated (filled shapes) or BSA-coated (empty shapes) beads and the expression of PD-1, TIM-3 and CD69 was followed in CD8+ T cells at baseline and 48 and 72 hours after stimulation.
Impact of polarised extragalactic sources on the measurement of CMB B-mode anisotropies
Creators: name: Lagache, G.
name: Bethermin, M.
name: Montier, L.
name: Serra, P.
name: Tucci, M.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: One of the main goals of Cosmology is to search for the imprint of primordial gravitational waves in the CMB polarisation field, to probe inflationary theories. One of the obstacles toward the detection of the primordial signal is to extract the B-mode polarisation from astrophysical contaminations. We present a complete analysis of extragalactic foreground contamination due to polarised emission of radio and dusty star-forming galaxies. We update or use up-to-date models that are validated using the most recent measurements. We predict the flux limit (confusion noise) for the future CMB space or balloon experiments (IDS, PIPER, SPIDER, LiteBIRD, PICO), as well as ground-based experiments (C-BASS, NEXT-BASS, QUIJOTE, AdvACTPOL, BICEP3+Keck, BICEPArray, CLASS, SO, SPT3G, S4). Telescope aperture size (and frequency) is the main characteristic impacting the level of confusion noise. Using the flux limits and assuming constant polarisation fractions for radio and dusty galaxies, we compute the B-mode power spectra of the three extragalactic foregrounds (radio source shot noise, dusty galaxy shot noise and clustering), discuss their relative levels and compare their amplitudes to that of the primordial tensor modes parametrized by the tensor-to-scalar ratio r. At the reionization bump (l=5), contamination by extragalactic foregrounds is negligible. At the recombination peak (l=80), while the contamination is much lower than the targeted sensitivity on r for large-aperture telescopes, it is at comparable level for some of the medium- and small-aperture telescope experiments. For example, the contamination is at the level of the 68 per cent confidence level uncertainty on the primordial r for the LiteBIRD and PICO space experiments. Finally we also provide some useful unit conversion factors and give some predictions for the SPICA B-BOP experiment. Abridged
description: A&A in press. Match published version
Praocis sulcata Eschscholtz. In 1829
Creators: name: Flores, Gustavo E.
name: Pizarro-Araya, Jaime
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Tenebrionidae
Praocis
Praocis sulcata

description: Praocis sulcata Eschscholtz, 1829
(Fig. 1)
 Praocis sulcata Eschscholtz, 1829: 7; Dejean, 1834: 180 (cat.); Dejean, 1836: 200 (cat.); Laporte, 1840: 187; Solier, 1840: 235 (rev.) (misidentif.); Lacordaire, 1859: 214; Gemminger & Harold, 1870: 1906 (cat.); Philippi, 1887: 733 (cat.); Gebien, 1910: 262 (cat.); Gebien, 1938: 400 (cat.); Blackwelder, 1945: 523 (cat.); Kulzer, 1958: 19 (rev.); Peña, 1966: 429 (cat.); Flores, 2007: 416 (lectot.).
 Praocis rotundata Laporte, 1840: 187 (not Lacordaire, 1830: 284); Solier, 1851: 190 (rev.); Lacordaire, 1859: 213; Gemminger & Harold, 1870: 1905 (cat.); Philippi, 1887: 732 (cat.); Gebien, 1910: 261 (cat.); Gebien, 1938: 398 (cat.); Blackwelder, 1945: 523 (cat.). New synonymy based on redescription of P. rotundata Laporte by Solier, 1851.
 Lectotype of Praocis sulcata (Fig. 1): [Type] [14893] [Hist.-Coll. (Coleoptera)/ Nr. 14893/ Praocis sulcata Eschsch. / Chili, Eschsch./ Zool. Mus. Berlin] [Syntypys/ Praocis sulcata / Eschscholtz, 1829 / labelled by the MNHUB 2005] [Lectotypus / Praocis sulcata Eschscholtz, 1829 / Des. G. Flores 2005] (MNHUB). One paralectotype same data as lectotype, except two first labels (MNHUB).
 Notes: Flores (2007: 416) designated lectotype and paralectotype. Because Praocis rotundata Laporte, 1840 is now placed in synonymy, there is no need to propose a new name for this species which is a junior homonym of Praocis rotundata Lacordaire, 1830.
 Comments. Praocis rotundata Laporte shares with P. sulcata Eschscholtz the following characters: elytron with two carinae well marked and three grooves bearing short, broad, golden, squamiform setae; carinae wider than grooves; lateral margin well demarcated with a finer edge; pseudopleuron with punctures. These characters were recognized by Solier (1851) in his redescription of P. rotundata Laporte and are diagnostic for P. sulcata as stated by Eschscholtz (1829).
Based on the examined material of this species housed in LEULS and IADIZA, we assign its geographical distribution to Chile, from Elqui Province (Coquimbo Region) to Concepcion Province (Bío Bío Region).
description: Published as part of Flores, Gustavo E. & Pizarro-Araya, Jaime, 2010, Two new synonymies in the genus Praocis (Coleoptera: Tenebrionidae), pp. 65-68 in Zootaxa 2386 (1) on page 66, DOI: 10.11646/zootaxa.2386.1.5, http://zenodo.org/record/5307030
Additional file 1 of The effect of glycerol as a cryoprotective agent in the cryopreservation of adipose tissue
Creators: name: Zhang, Pei-Qi
name: Tan, Poh-Ching
name: Gao, Yi-Ming
name: Zhang, Xiao-Jie
name: Xie, Yun
name: Zheng, Dan-Ning
name: Zhou, Shuang-Bai
name: Li, Qing-Feng
Publisher: name: figshare
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Physical Sciences not elsewhere classified
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Computational Biology

description: Additional file 1. Supplementary materials, including supplemental methods and the supplemental figures S1–S5. The supplemental methods contain the protocols of following experiments: Live/dead cell stain and flow cytometry, RT-PCR, flow cytometry and surface marker identification, ASCs multi-lineage differentiation assessment, quantify lipid droplets area, and immunofluorescence study.
A Reconciliation of Electromagnetism and Gravitation
Creators: name: Sidharth, B. G.
Publisher: name: arXiv
Year: 2001
Subjects: subject: General Physics (physics.gen-ph)
subject: FOS: Physical sciences

description: It is argued that once we consider the underpinning of a Non Commutative geometry, itself symptomatic of extended particles, for example in Quantum Superstring theory, then a reconciliation between gravitation and electromagnetism is possible.
description: 11 pages, TeX
Additional file 2 of Protocol for a feasibility study incorporating a randomised pilot trial with an embedded process evaluation and feasibility economic analysis of ThinkCancer!: a primary care intervention to expedite cancer diagnosis in Wales
Creators: name: Disbeschl, Stefanie
name: Surgey, Alun
name: Roberts, Jessica L.
name: Hendry, Annie
name: Lewis, Ruth
name: Goulden, Nia
name: Hoare, Zoe
name: Nefyn Williams
name: Anthony, Bethany Fern
name: Edwards, Rhiannon Tudor
name: Rebecca-Jane Law
name: Hiscock, Julia
name: Carson-Stevens, Andrew
name: Neal, Richard D.
name: Wilkinson, Clare
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 2:. ThinkCancer! Logic Model.
Additional file 1 of The efficacy of mesenchymal stromal cell-derived therapies for acute respiratory distress syndrome—a meta-analysis of preclinical trials
Creators: name: Wang, Fengyun
name: Fang, Bin
name: Qiang, Xinhua
name: Shao, Jingsong
name: Zhou, Lixin
Publisher: name: figshare
Year: 2020
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Physiology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 1. Subgroup meta-analysis.
Additional file 3 of Protocol for a feasibility study incorporating a randomised pilot trial with an embedded process evaluation and feasibility economic analysis of ThinkCancer!: a primary care intervention to expedite cancer diagnosis in Wales
Creators: name: Disbeschl, Stefanie
name: Surgey, Alun
name: Roberts, Jessica L.
name: Hendry, Annie
name: Lewis, Ruth
name: Goulden, Nia
name: Hoare, Zoe
name: Nefyn Williams
name: Anthony, Bethany Fern
name: Edwards, Rhiannon Tudor
name: Rebecca-Jane Law
name: Hiscock, Julia
name: Carson-Stevens, Andrew
name: Neal, Richard D.
name: Wilkinson, Clare
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 3. participant flow diagram.
Modeling plate and spring reverberation using a DSP-informed deep neural network
Creators: name: Ramírez, Marco A. Martínez
name: Benetos, Emmanouil
name: Reiss, Joshua D.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Audio and Speech Processing (eess.AS)
subject: Machine Learning (cs.LG)
subject: Sound (cs.SD)
subject: Signal Processing (eess.SP)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Computer and information sciences

description: Plate and spring reverberators are electromechanical systems first used and researched as means to substitute real room reverberation. Nowadays they are often used in music production for aesthetic reasons due to their particular sonic characteristics. The modeling of these audio processors and their perceptual qualities is difficult since they use mechanical elements together with analog electronics resulting in an extremely complex response. Based on digital reverberators that use sparse FIR filters, we propose a signal processing-informed deep learning architecture for the modeling of artificial reverberators. We explore the capabilities of deep neural networks to learn such highly nonlinear electromechanical responses and we perform modeling of plate and spring reverberators. In order to measure the performance of the model, we conduct a perceptual evaluation experiment and we also analyze how the given task is accomplished and what the model is actually learning.
description: Presented at the IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP), Barcelona, Spain, May 2020. Source code, dataset, audio examples and more detailed diagrams: https://mchijmma.github.io/modeling-plate-spring-reverb/
Ultrasoft Renormalization in Non-Relativistic QCD
Creators: name: Hoang, Andre H.
name: Stewart, Iain W.
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: For Non-Relativistic QCD the velocity renormalization group correlates the renormalization scales for ultrasoft, potential and soft degrees of freedom. Here we discuss the renormalization of operators by ultrasoft gluons. We show that renormalization of soft vertices can induce new operators, and also present a procedure for correctly subtracting divergences in mixed potential-ultrasoft graphs. Our results affect the running of the spin-independent potentials in QCD. The change for the NNLL t-tbar cross section near threshold is very small, being at the 1% level and essentially independent of the energy. We also discuss implications for analyzing situations where mv^2 ~ Lambda_QCD.
description: 31 pages, 11 figs
MOESM1 of Atrial fibrillation classification based on convolutional neural networks
Creators: name: Kwang-Sig Lee
name: Sunghoon Jung
name: Yeongjoon Gil
name: Son, Ho
Publisher: name: figshare
Year: 2019
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Additional file 1: Figure S1. Electrocardiogram Wave. A Normal. B Atrial Fibrillation vs. Normal. The atrial-fibrillation rhythm in the top does not have a P wave (purple arrow) of the normal rhythm in the bottom. Figure S2. Preprocessing. A. Removing the Background Grid. B. Selecting Target Signals. C. Getting Numeric Values. Figure S3. A. AF Misspecified as Normal by Residual 1–3, 1–4, 3–1 and 3–2 (1/3). B. AF Misspecified as Normal by Residual 1–1, 1–2, 1–3, 1–4, 1–6 and 2–5 (2/3). C. AF Misspecified as Normal by Residual 1–1, 1–2, 1–3, 1–4, 1–5, 1–6, 2–1, 2–2 and 3–2 (3/3). D. Normal Misspecified as AF by Residual 1–1, 1–2, 1–6, 2–3 and 2–4 (1/5). E. Normal Misspecified as AF by Residual 1–1, 1–2, 1–5, 2–1, 2–2, 2–3, 2–4, 2–5 and 3–1 (2/5). F. Normal Misspecified as AF by Residual 1–1, 1–2, 1–3, 1–5, 2–1, 2–3, 2–4, 2–5, 3–1 and 3–2 (3/5). G. Normal Misspecified as AF by Residual 1–2, 1–5, 2–1, 2–3, 2–5 and 3–1 (4/5). H. Normal Misspecified as AF by Residual 1–4, 2–1, 2–3, 2–4, 2–5 and 3–1 (5/5). I. Normal Specified as Normal by Residual Networks (1/3). J. Normal Specified as Normal by Residual Networks (2/3). K. Normal Specified as Normal by Residual Networks (3/3). L. AF Specified as AF by Residual Networks (1/3). M. AF Specified as AF by Residual Networks (2/3). N. AF Specified as AF by Residual Networks (3/3).
Relationship between cooking oil and death risk of SARS-CoV-2
Creators: name: Besharati, Mohammad Reza
name: Izadi, Mohammad
name: Alireza Talebpour
Publisher: name: Zenodo
Year: 2021
Subjects: SARS-CoV-2, COVID-19, Cooking Oil, Death Risk, Nutrition, Olive Oile, Butter, Sesame Oile

description: Based on 3186 self-reported records of families across Iran
Global Emission Line Trends in Spiral Galaxies: The Reddening and Metallicity Sequences
Creators: name: Stasinska, Grazyna
name: Sodre, Laerte
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We have explored the emission line trends in the integrated spectra of normal spiral galaxies of the Nearby Field Galaxy Survey, in order to investigate the relationships between dust extinction, metallicity and some macroscopic properties of spiral galaxies. We found a very strong correlation between the Hbeta and Halpha equivalent widths, implying that the difference between the extinction of the stellar and the nebular light depends only on the intrinsic colours of the galaxies, being larger for redder galaxies. The usual metallicity indicator for giant HII regions ([OIII]4959,5007 + [OII]3726,3729)/ Hbeta is not appropriate for integrated spectra of spiral galaxies, probably due to metallicity gradients. Much better qualitative metallicity indicators are found to be [NII]6584/[OII]3726,3729 and [NII]6584/Halpha, the latter having the advantage of being independent of reddening and being applicable also for galaxies with weak emission lines. With these indicators, we find that the nebular extinction as derived from the Balmer decrement strongly correlates with the effective metallicity of the emission line regions. The overall metallicity of the emission line regions is much better correlated with galaxy colours than with morphological types. A Principal Component Analysis on a 7-D parameter space showed that the variance is produced, in first place, by the metallicity and parameters linked to the stellar populations, and, in second place, by the surface brightness, which is linked to the dynamical history of the galaxies. The absolute magnitude, related to the mass of the galaxy, comes only in the third place.
description: 13 pages; to appear in A&A
title: Examination of the impact of education on cognitive screening tests
Creators: name: Crombie, Mairi
Publisher: name: University of Glasgow
Year: 2021
Subjects: subject: Cognitive screening , dementia, clock drawing, education, illiteracy.

description: Background and objectives: The clock drawing test (CDT) is a widely used cognitive screening test. However, CDT performance is affected by education. This study examined an alternative: the Papadum test, designed for people with low levels of education/literacy. The association between education and test performance, correlation between CDT and Papadum test, and diagnostic accuracy of both CDT and Papadum tests were examined. Method: 89 healthy literate adults and 59 literate adults with a diagnosis of dementia from hospitals in Kolkata, India undertook the CDT and the Papadum test. Results: Education had a significant association with the CDT but not with the Papadum test. Across the whole sample there was a significant correlation between CDT and Papadum, but not within separate groups of healthy controls and patients. Diagnostic accuracy for the Papadum Test was similar to that for CDT. Conclusions: Results highlight the strong influence that education has on CDT performance indicating that it is not suitable for those with low levels of literacy. The Papadum test could provide a viable alternative as a screening tool to the CDT for use with people who are illiterate or have low levels of education. Further validation studies are required.
Gravitational Collapse for the K-essence Emergent Vaidya Spacetime
Creators: name: Manna, Goutam
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In this paper, we study the gravitational collapse in the {\bf k-}essence emergent gravity using a generalized Vaidya-type metric as a background. We also analyze the cosmic censorship hypothesis for this system. We show that the emergent gravity metric resembles closely to the new type of the generalized Vaidya metrics for null fluid collapse with the {\bf k-}essence emergent mass function, where we consider the {\bf k-}essence scalar field being a function solely of the advanced or the retarded time. This new type of {\bf k-}essence emergent Vaidya metric has satisfied the required energy conditions. The existence of the locally naked central singularity, the strength and the strongness of the singularities for the {\bf k-}essence emergent Vaidya metric are the interesting outcomes of the present work.
description: 9 pages, 2 figures, Accepted from EPJ C
KamLAND and solar neutrino data eliminate the LOW solution
Creators: name: Barger, V.
name: Marfatia, D.
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Astrophysics (astro-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: Nuclear Experiment (nucl-ex)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: The KamLAND reactor antineutrino experiment has detected a 3.4σflux suppression relative to the expectation if no neutrino oscillations occur. We combine KamLAND data with solar neutrino data and show that the LMA solution is the only viable oscillation solution to the solar neutrino problem at the 4.4σC. L.
description: 6 pages, 2 figures
Additional file 4 of Protocol for a feasibility study incorporating a randomised pilot trial with an embedded process evaluation and feasibility economic analysis of ThinkCancer!: a primary care intervention to expedite cancer diagnosis in Wales
Creators: name: Disbeschl, Stefanie
name: Surgey, Alun
name: Roberts, Jessica L.
name: Hendry, Annie
name: Lewis, Ruth
name: Goulden, Nia
name: Hoare, Zoe
name: Nefyn Williams
name: Anthony, Bethany Fern
name: Edwards, Rhiannon Tudor
name: Rebecca-Jane Law
name: Hiscock, Julia
name: Carson-Stevens, Andrew
name: Neal, Richard D.
name: Wilkinson, Clare
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 4:. SPIRIT Checklist.
Composition-Aware Spectroscopic Tomography
Creators: name: Pfister, Luke
name: Bhargava, Rohit
name: Bresler, Yoram
name: Carney, P. Scott
Publisher: name: arXiv
Year: 2019
Subjects: subject: Image and Video Processing (eess.IV)
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: Chemical imaging provides information about the distribution of chemicals within a target. When combined with structural information about the target, in situ chemical imaging opens the door to applications ranging from tissue classification to industrial process monitoring. The combination of infrared spectroscopy and optical microscopy is a powerful tool for chemical imaging of thin targets. Unfortunately, extending this technique to targets with appreciable depth is prohibitively slow. We combine confocal microscopy and infrared spectroscopy to provide chemical imaging in three spatial dimensions. Interferometric measurements are acquired at a small number of focal depths, and images are formed by solving a regularized inverse scattering problem. A low-dimensional signal model is key to our approach: we assume the target comprises a finite number of distinct chemical species. We establish conditions on the constituent spectra and the number of measurements needed for unique recovery of the target. Simulations illustrate imaging of cellular phantoms and sub-wavelength targets from noisy measurements.
Aradus holzschuhi Heiss 2003
Creators: name: Bai, X.
name: Heiss, E.
name: Cai, W.
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Aradidae
Aradus
Aradus holzschuhi

description: Aradus holzschuhi Heiss 2003
 Material examined: 1♀ Sichuan, Hong yuan 3600–3800 m, 6 VIII 1983, Zhang Xuezhong lg. (CAS); 1♀ Sichuan, Kangding, Gonggashan 3650 m, 2 IX 1982, Zhang Xuezhong lg. (CAS).
description: Published as part of Bai, X., Heiss, E. & Cai, W., 2010, New records, a synonymy and a new species of Aradus Fabricius, 1803 (Hemiptera: Heteroptera: Aradidae) from China, pp. 59-68 in Zootaxa 2388 (1) on page 66, DOI: 10.11646/zootaxa.2388.1.5, http://zenodo.org/record/5307002
LPJmL code, configuration, relevant output data, and processing scripts for Jurak et al: Spatial heterogeneity matters: Trade-off analysis of uniform vs. targeted policies to reduce nitrogen surplus in agriculture
Creators: name: Müller, Christoph
Publisher: name: Zenodo
Year: 2025

description: Data and code archive for simulating crop yield (pft_harvestc.clm) at different nitrogen fertilizer input levels for the publication of "Jurak et al: Spatial heterogeneity matters: Trade-off analysis of uniform vs. targeted policies to reduce nitrogen surplus in agriculture". Archive contains:* Germany-specific soil input file (all soil codes outside Germany are zero, so that standard global inputs can be used but only Germany is simulated * R scripts   * `extract_germany_soilcode.R`: to create that soil input  * `wheat_area_landing.R`: to extract the wheat growing areas from the LandInG data (Ostberg et al. 2023)  * `run_sims_nitrogen_germany.R`: to submit the necessary simulations to the PIK HPC "foote" with lpjmlkit (Breier et al. 2024)  * `analyze_data.R`: to explore some outputs -- this is not used for the final analysis but rather for exploring data* a csv file with the wheat area for Germany in 2017* the LPJmL source code in a slightly modified version of version 5.3.001 as used here* the LPJmL simulation outputs in sub-folders of `sim240926`
Additional file 1 of HPV infection and bacterial microbiota in the semen from healthy men
Creators: name: Tuominen, Heidi
name: Rautava, Jaana
name: Kero, Katja
name: Syrjänen, Stina
name: Collado, Maria Carmen
name: Rautava, Samuli
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Table 1. The list of the samples.
The Impacts of Chinese Exchange Rate Policy on World Soybean and Products Markets
Creators: name: Luo, Ji
name: Williams, Gary W.
name: Luo, Ji
name: Williams, Gary W.
Publisher: name: Unknown
Year: 2015
Subjects: subject: Agribusiness
subject: Agricultural and Food Policy
subject: Demand and Price Analysis
subject: Financial Economics
subject: Food Consumption/Nutrition/Food Safety
subject: International Development
subject: International Relations/Trade
subject: Livestock Production/Industries
subject: Marketing
subject: FOS: Economics and business
subject: Production Economics
subject: exchange rate policy
subject: soybean
subject: supply chain
subject: undervaluation

description: This study examines the impacts of China’s exchange rate policy on commodity market with a lengthy vertical supply chain. By taking the soybean industry as a case, the analysis considers the joint effects of the undervaluation of the RMB/$US exchange rate and the interactions along vertical supply chain relative to prices, supplies, demands, and trade of world soybean and soybean products, In the analysis, the effects of China’s monetary policy of RMB undervaluation on world soybean, soybean meal and soybean oil supplies, demands, prices and trade over the 1993/94 through 2012/13 are measured. Simulation results show RMB undervaluation has significant effects on world soybean and soybean products markets. China’s monetary policy of RMB undervaluation is likely to increase China’s soybean price and reduce China’s soybean imports. It is also found that China has borne most of the burden from its own exchange rate undervaluation policy over the years.
Knowledge and Adoption of Best Management Practices to Address Water Quality Issues
Creators: name: Black, Michael
name: Popp, Jennie
name: Sharpley, Andrew
name: Daniels, Mike
name: Black, Michael
name: Popp, Jennie
name: Sharpley, Andrew
name: Daniels, Mike
Publisher: name: Unknown
Year: 2015
Subjects: Environmental Economics and Policy
Farm Management
Teaching/Communication/Extension/Profession

description: Efforts to control nonpoint source pollution (NPS) that impacts water quality have focused on conservation practices, also known as best management practices (BMPs). BMPs are voluntary, and therefore adoption rates vary due to availability of financial/technical assistance, environmental perceptions, and perception and knowledge of BMPs, among other things. This study looks at agricultural producers in the nutrient-rich Illinois River Watershed in Arkansas, and analyzes perception and adoption of BMPs. While differences between producer types existed, focusing educational/outreach efforts on demonstrating the existence of water quality issues may prove to be the most effective tool in increasing the adoption rates of BMPs in the watershed and improving water quality for downstream stakeholders.