cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Vatopsis Grundel 1980
Creators: name: Hansen, Thomas
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Ptenoglossa
Newtoniellidae
Vatopsis

description: Vatopsis sp.
Fig. 28W
Material. Specimen MGUH 33223 is an external mould of the teleoconch.
Occurrence. Lithified top of the Cretaceous Højerup Member at Stevns Klint.
Description. Shell moderately slender with strongly flattened and low whorls separated by narrow and indistinct suture located on periphery on preceding whorl. Whorl height corresponding to less than half the width. Peripheral transition to flat base sharp.
Teleoconch sculpture weakly reticulate with five spiral ribs crossed by between 30 and 34 prosocline and slightly prosocyrt transverse ribs with low tubercles at connecting nodes. Adapical two spiral ribs stronger and more widely spaced than succeeding three. An additional spiral rib accentuating transition to base visible on last whorl. Base carrying at least seven spiral ribs decreasing in strength adaxially.
Measurements. MGUH 33223 is a teleoconch lacking the apex and measuring 5.9 mm in height and 2.5 mm in width. It consists of just over six whorls.
Remarks. It closely resembles Vatopsis heinbergi n. sp. described above from the Cerithium Limestone Member, but differs by the distinct spiral sculpture on the base and by having five spiral ribs instead of four. Further material is needed before the taxonomic status of this taxon may be satisfactorily unravelled.
description: Published as part of Hansen, Thomas, 2019, Gastropods from the Cretaceous-Palaeogene boundary in Denmark, pp. 1-196 in Zootaxa 4654 (1) on pages 122-123, DOI: 10.11646/zootaxa.4654.1.1, http://zenodo.org/record/3365803
Universal Sequence Tag Array (U-STAR) platform : strategies towards the development of a universal platform for the absolute quantification of gene expression on a global scale
Creators: name: So, Austin Pierre
Publisher: name: University of British Columbia
Year: 2009

description: The advent of technologies specifically designed to capture glimpses of gene expression on a systems-wide scale has led to a revolution in our understanding of cellular dynamics, identifying the contributions and interactions of families of genes involved in cell development, dysfunction, and death. Broadly classified into count-based “digital” or signal-based “analogue” approaches, these technologies have permitted “portraits” of the transcriptome to be generated through comparative measurements of gene expression, enabling, for example, the generation of qualitative models of disease. However, truly predictive models of cellular function that can enhance our ability to discover new pharmaceuticals, detect and monitor disease, evaluate treatments, and ultimately, predict and prevent illness, require platforms that can provide detailed and accurate measurements of transcript abundances on an absolute scale. Unfortunately, inherent limitations preclude these technologies from providing this level of quantitative information. This thesis examines design issues associated with a popular digital approach to transcriptomics, serial analysis of gene expression (SAGE), that diminish us utility as a tool for absolute transcriptomics. Careful analysis of the processing steps involved in converting the starting mRNA population into short sequence tags (SST5) and subsequently into a format amenable to interrogation via sequencing technology reveals the introduction of strong biases and artifacts that limit reproducible abundance measurements in SAGE to transcripts present within the highest 2 orders of magnitude in the original sample. As a large number of steps are involved in formatting SSTs for analysis via sequencing, an alternative strategy is presented that utilizes a microarray-based analogue approach for the interrogation of SSTs. Termed the Universal Sequence Tag Array (U-STAR) platform, this platform is able to provide accurate quantitative measurements over a 3-decade range of transcript abundances by obviating sources of bias associated with both SAGE and DNA microarray technologies and eliminating the requirement for material amplification. The SAGE-like utilization of STARtags also endows this technology with the potential to be used as a universal platform, eliminating costs associated with custom microarray construction, and minimizing those associated with the preparation and large-scale sequencing of SAGE libraries. Considerations for future development are also discussed for the USTAR platform.
Additional file 2: of DensityMap: a genome viewer for illustrating the densities of features
Creators: name: SĂŠbastien Guizard
name: BenoĂŽt PiĂŠgu
name: Bigot, Yves
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Science Policy

description: DensityMap Manual. (DOCX 239 kb)
Ageria Abbass 1973
Creators: name: Hansen, Thomas
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Neotaenioglossa
Procerithiidae
Ageria

description: Genus Ageria Abbass, 1973
Type species. Ageria gaultina Abbass, 1973 (type by original designation). Early Cretaceous, Kent in England.
description: Published as part of Hansen, Thomas, 2019, Gastropods from the Cretaceous-Palaeogene boundary in Denmark, pp. 1-196 in Zootaxa 4654 (1) on page 123, DOI: 10.11646/zootaxa.4654.1.1, http://zenodo.org/record/3365803
Additional file 3: of Genes with high penetrance for syndromic and non-syndromic autism typically function within the nucleus and regulate gene expression
Creators: name: Casanova, Emily
name: Sharp, Julia
name: Hrishikesh Chakraborty
name: Sumi, Nahid
name: Casanova, Manuel
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Full statistical results. (DOCX 164Â kb)
Agrilaxia (Agrilaxia) chrysifrons Kerremans 1896
Creators: name: Bílý, Svatopluk
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Buprestidae
Agrilaxia
Agrilaxia chrysifrons

description: Agrilaxia (Agrilaxia) chrysifrons (Kerremans, 1896)
(Fig. 14)
This species was described for a single female labelled “ Brésil, Manuf.[acturé de] Tabac” (Kerremans, 1896). From French Guiane it was recorded by Bílý & Brûlé (2013) from the Kaw region and recently I have studied specimens from the following new localities:
“La Désirée, N4°50′42′′ W 52°20′54′′, 1.viii.2014, SEAG team leg. // Light trap LED bleu” (2 males, NMPC); “Régina—ex larva, 4.i.2013, S. Brûlé leg.” (2 females, NMPC, GCCI); “M.gne [Montagne] des Chevaux, 25.xi.2012, S. Brûlé leg.” (1 female, GCCI).
Bionomy. Unknown, but two males were obtained by means of the light trap (see above) which is very unusual in Buprestidae.
description: Published as part of Bílý, Svatopluk, 2017, A study of the genus Agrilaxia Kerremans, 1903 from French Guiana (Coleoptera: Buprestidae: Anthaxiini), pp. 65-72 in Zootaxa 4216 (1) on pages 71-72, DOI: 10.5281/zenodo.229828
Additional file 3: of The influence of a modified lipopolysaccharide O-antigen on the biosynthesis of xanthan in Xanthomonas campestris pv. campestris B100
Creators: name: Steffens, Tim
name: Frank-Jörg Vorhölter
name: Giampà, Marco
name: Hublik, Gerd
name: Pühler, Alfred
name: Niehaus, Karsten
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Cultivation replicates of the Xanthomonas campestris pv. campestris B100 wild type (A, B) the three mutants Xcc H21012 (wxcB) (C,D), Xcc H28110 (wxcK) (E,F) and Xcc H20110 (wxcN) (G,H). All strains were grown in XMD minimal media with 0.6 g/l KNO3 as nitrogen source and supplemented with 30 g/l glucose as carbon source, at 30 °C and 180 rpm. The cultivation occurred simultaneously under the same conditions for 96 h. Displayed are the culture titer (OD), glucose and nitrogen consumption over time. (PDF 1393 kb)
Playing their game : France, Latin America, and the transformation of geometric abstraction in postwar Paris
Creators: name: Sesín, Martha L.
Publisher: name: University of British Columbia
Year: 2009

description: This study considers a specific form of geometric abstraction initiated by a group of Latin American artists — including the Argentineans Julio Le Pare and Martha Boto, and the Venezuelans Carlos Cruz-Diez and Jesus Rafael Soto —who were active in Paris during the early 1960s. The work of these artists, which was by no means cohesive, was rooted in a tradition of European and Latin American geometric abstraction, yet with a modem edge. The work played with a recognizable formal vocabulary, but offered a participatory model of engagement distinct from the emotional detachment of early 20th century geometric abstraction and the gestural tendencies of abstract expressionism. Optical and kinetic art, as it came to be called, offered the early 1960’s viewer in Paris a kind of unique artistic experience which mediated both the pressing postwar needs of France and Latin America and the technological optimism of a hyper-consumerist era. Utilizing new artistic materials (i.e. plastic) and technological devices that made reference to the world of advertising and design, these artists became unwittingly connected to the international economic and political aspirations of France at what was an uncertain historical moment. Launched by the seminal exhibition Le Mouvement, held at Galerie Denise René in April 1955, optical and kinetic art enjoyed significant attention and public success in Paris for a decade, yet this prominence has yet to be critically examined. With its focus on interaction and play, optical and kinetic art led some serious-minded critics in the 1950’s and 60’s to dismiss this work as whimsical and light-hearted, a condition which still plagues the critical reception of this work. This thesis addresses this gap in scholarship by situating this particular version of optical and kinetic art within its historical moment and local context. More specifically, I consider what made this work so appealing to a French public, as tensions regarding France’s global identity under the leadership of Charles de Gaulle were being worked out.
Additional file 1: of DensityMap: a genome viewer for illustrating the densities of features
Creators: name: SĂŠbastien Guizard
name: BenoĂŽt PiĂŠgu
name: Bigot, Yves
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Synopsis of the main program and functions. (DOCX 6 kb)
Ageria Abbass 1973
Creators: name: Hansen, Thomas
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Neotaenioglossa
Procerithiidae
Ageria

description: Ageria sp.
Figs 29 F–G
Material. A moderately well preserved external and internal mould (MGUH 33229), which may be mislaid, and a poorly preserved external mould MGUH 33230.
Occurrence. Lithified top of the Højerup Member of the Maastrichtian Tor Formation at Rødvig and Holtug Quarry, Stevns Klint.
Description. Protoconch not known. Teleoconch whorls flattened, relatively high, the height corresponding to about 60 % of width, separated by shallow suture. Keel on last whorl very sharp, delineated adapically by wide furrow. Base strongly flattened. Aperture subrectangular, slightly flaring with two low spiral folds on outer lip.
Teleoconch sculpture changing with growth; initial whorls carrying about 14 coarse, slightly opisthocline transverse ribs fading out towards sutures; ribs terminating abapically towards weak spiral rib delineating beaded keel. Transverse ribs fading out on later whorls, being replaced by three beaded spiral ribs; adapical keel ramp carrying three weak spiral threads. Growth lines opisthocyrt and slightly opisthocline.
Measurements. Teleoconch on disappeared specimen at least 11.2 mm high and 3.7 mm wide, consisting of nine whorls.
Remarks. Ageria sp. resembles Ageria gankinensis Kaim et al., 2004 from the Late Maastrichtian of Siberia, but differs by the denser sculpture with three instead of two primary beaded spiral ribs adapical to the keel. It seems to differ from Ageria skeldervigensis n. sp. described above from the same deposits by the relatively high whorls and extremely sharp keel, but a very limited material prevents any definite conclusions as the differences could reflect ecophenotypic variation.
description: Published as part of Hansen, Thomas, 2019, Gastropods from the Cretaceous-Palaeogene boundary in Denmark, pp. 1-196 in Zootaxa 4654 (1) on page 126, DOI: 10.11646/zootaxa.4654.1.1, http://zenodo.org/record/3365803
Additional file 2 of Tissue enrichment analysis for C. elegans genomics
Creators: name: Angeles-Albores, David
name: Lee, Raymond N.
name: Juancarlos Chan
name: Sternberg, Paul
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Marine Biology

description: Folder Structure for SI files 3 and 4. A file detailing the folder structure of the zipped folders 3 and 4. (PDF 138 kb)
Odonatoptera Lameere 1900
Creators: name: Wang, Ye-hao
name: Nel, André
name: Fu, Yan-zhe
name: Su, Yi-tong
name: Cai, Chen-yang
name: Liu, Yu-ming
name: Gao, Jian
name: Huang, Di-ying
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia

description: Superorder Odonatoptera Lameere, 1900
Family uncertain
(Fig. 3A)
Material. NIGP 180148, fragment of the costal area of a wing.
Remarks. The absence of a kink in ScP and of a distinct nodal furrow strongly suggest that this wing fragment does not belong to Panodonata (sensu Bechly, 1996). Its nodus fits better with that of a ‘Protozygoptera’ of the superfamily Permagrionoidea Tillyard, 1928. These also have aligned nodal crossing and subnodus, numerous postnodal and postsubnodal crossveins, and the base of RP2 distad subnodus, as in this fossil (Nel et al., 2012). But the Permagrionoidea are strictly Permian to date, the presence of a representative of this group in the early Jurassic would be quite surprising. This wing could also correspond to a case of reversal in the nodal structures, somewhat similar to the situation in the Mesozoic anisopteran Aeschnidiidae or the Cenozoic zygopteran Sieblosiidae that have ScP crossing through the nodus (Fleck & Nel, 2003).
description: Published as part of Wang, Ye-hao, Nel, André, Fu, Yan-zhe, Su, Yi-tong, Cai, Chen-yang, Liu, Yu-ming, Gao, Jian & Huang, Di-ying, 2022, New insect fossils discovered from the Lower Jurassic Sangonghe Formation at the Turpan Basin, Xinjiang, NW China, pp. 183-194 in Palaeoentomology 5 (2) on page 186, DOI: 10.11646/palaeoentomology.5.2.12, http://zenodo.org/record/6530365
The effects of novel hybrid exercise rehabilitation on cardiovascular function and orthostatic tolerance in individuals with spinal cord injury
Creators: name: Wong, Shirley Candice
Publisher: name: University of British Columbia
Year: 2009

description: Persons with spinal cord injury (SCI) often suffer from orthostatic hypotension (marked reduction in blood pressure upon assuming an upright posture) and exercise may assist with its treatment by improving cardiovascular health and autonomic regulation. Hybrid exercise (concurrent movement of the arms and legs) promotes enhancements in venous return, ventricular filling, and cardiorespiratory function. However, limited research has evaluated the effects of hybrid exercise on orthostatic tolerance. Accordingly, this study evaluated the effects of arm and hybrid exercise on orthostatic response and on cardiorespiratory function during peak exercise. Additionally, the effects of spinal cord lesion level were examined. Asymptomatic persons with SCI (C4-T6) and age- and gendermatched able-bodied controls participated in four testing days. The first two testing days examined participants’ orthostatic tolerance following rest followed by a peak arm cycle or hybrid exercise test (in random order). The final two testing days assessed the acute effects of steady state arm and hybrid exercise on orthostatic response (in random order). There was no significant decrease (p=O.07) in middle cerebral artery blood velocity upon assuming the upright position following a bout of hybrid steady state exercise in participants with SCI (67.2 ± 18.8 to 61.8 ± 14.8 cm s-1, respectively). Hybrid exercise resulted in significantly (p<O.05) greater cardiorespiratory requirements throughout incremental exercise in comparison to arm ergometry in all groups. The average peak oxygen uptake (across all groups) was 21 ± 9 vs. 19 ± 7 mLkgmin-1,for hybrid exercise vs. arm ergometry, respectively. The average peak oxygen uptake (across all modes of exercise) was 24.9 ± 7.9 vs. 15.7 ± 4.2 mLkgmin-1,for able-bodied participants vs. participants with SCI, respectively. Furthermore, persons with paraplegia had significantly (p<O.05) higher oxygen uptake than persons with tetraplegia and the average peak oxygen uptake (across all modes of exercise) was 18.5 ± 3.7 vs. 12.9 ± 2.4 mLkg•min-1for these groups, respectively. Hybrid exercise improved cardiovascular response to an orthostatic challenge and promoted greater cardiorespiratory response in comparison to arm exercise in persons with Sd. Furthermore, lesion level of SCI affects responses to an orthostatic challenge and peak exercise.
Neogastropoda Wenz 1938
Creators: name: Hansen, Thomas
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Neogastropoda

description: Order Neogastropoda Wenz, 1938
Superfamily Buccinoidea Rafinesque, 1815
description: Published as part of Hansen, Thomas, 2019, Gastropods from the Cretaceous-Palaeogene boundary in Denmark, pp. 1-196 in Zootaxa 4654 (1) on page 135, DOI: 10.11646/zootaxa.4654.1.1, http://zenodo.org/record/3365803
Sinoscarterella Nel, Fu & Huang 2022, gen. nov.
Creators: name: Wang, Ye-hao
name: Nel, André
name: Fu, Yan-zhe
name: Su, Yi-tong
name: Cai, Chen-yang
name: Liu, Yu-ming
name: Gao, Jian
name: Huang, Di-ying
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Dysmorphoptilidae
Sinoscarterella

description: Genus Sinoscarterella Nel, Fu & Huang, gen. nov.
urn:lsid:zoobank.org:act: C837B59B-B7BC-4FBD- A306-9D0A4CCF45DB
Type species. Sinoscarterella incompleta Nel, Fu & Huang, sp. nov.
Etymology. Named after the Latin name sina for China, and the suffix ‘ scarterella ’, frequently employed for the fossil eoscarterelline genera. Gender feminine.
Diagnosis. Forewing characters only. Forewing rugose, punctate; posterior curvature of main stem of RA; branches of CuA elongate; MP with 11 branches reaching wing margin; no branch of R basad emergence of RP; 5–6 anterior branches of RA; first branch of RA not pectinate; postclaval portion of membrane curved; first anterior branch of MP forked distad crossvein rp-m; first posterior branch of MP forked basad crossvein m-cua; first posterior branch of MP with 11 terminal branches reaching posterior wing margin; first fork of MP distad that of CuA.
description: Published as part of Wang, Ye-hao, Nel, André, Fu, Yan-zhe, Su, Yi-tong, Cai, Chen-yang, Liu, Yu-ming, Gao, Jian & Huang, Di-ying, 2022, New insect fossils discovered from the Lower Jurassic Sangonghe Formation at the Turpan Basin, Xinjiang, NW China, pp. 183-194 in Palaeoentomology 5 (2) on page 186, DOI: 10.11646/palaeoentomology.5.2.12, http://zenodo.org/record/6530365
Fusinus Rafinesque 1815
Creators: name: Hansen, Thomas
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Neogastropoda
Fasciolariidae
Fusinus

description: Genus Fusinus Rafinesque, 1815
Type species. Murex colus Linnaeus, 1758 (type by monotypy). Recent, Indo Pacific.
description: Published as part of Hansen, Thomas, 2019, Gastropods from the Cretaceous-Palaeogene boundary in Denmark, pp. 1-196 in Zootaxa 4654 (1) on page 135, DOI: 10.11646/zootaxa.4654.1.1, http://zenodo.org/record/3365803
Additional file 1: Figure S1. of Transcriptomic analysis of a classical model of carbon catabolite regulation in Streptomyces coelicolor
Creators: name: Romero-Rodríguez, Alba
name: Rocha, Diana
name: Ruiz-Villafan, Beatriz
name: Tierrafría, Víctor
name: Rodríguez-Sanoja, Romina
name: Segura-González, Daniel
name: Sánchez, Sergio
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: This file contains the qualitative visualization of Glk activity on BPG Agar medium. Figure S2. This file contains a diagram summarizing the microarrays output and their intersection. Figure S3. This file contains the RT-qPCR validation of selected differentially expressed genes. Table S1. Complete dataset of differentially expressed genes at statistically significant levels (pfp values ≤0.15) of S. coelicolor cells grown in 0.5 % glucose + 0.5 % agar, relative to cells grown in 1 % agar. Table S2. Data set of differentially expressed genes at statistically significant levels (pfp values ≤0.15) in the ScoM145 wild-type strain, relative to the ScoZm mutant. Table S3. Including differentially expressed genes shared between Glc/Agar and ScoM145/ScoZm comparisons. Table S4. Lists oligonucleotides used in this study. (PDF 1450 kb)
Additional file 7: Table S3 of Bayesian reversible-jump for epistasis analysis in genomic studies
Creators: name: Balestre, Marcio
name: Souza, Claudio De
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Simulated QTL effects from the Qgene program. (DOCX 14Â kb)
MOESM1 of Strategies of offspring investment and dispersal in a spatially structured environment: a theoretical study using ants
Creators: name: Cronin, Adam
name: Loeuille, Nicolas
name: Monnin, Thibaud
Publisher: name: Figshare
Year: 2016
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Science Policy

description: Additional file 1: Overview, Design concepts and Details for Netlogo model. This file contains a detailed description of the model components and function following the format suggested by Railsback and Grimm [52].
Streptochetus Cossmann 1889
Creators: name: Hansen, Thomas
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Neogastropoda
Fasciolariidae
Streptochetus

description: Genus Streptochetus Cossmann, 1889
Type species. Fusus intortus Lamarck, 1803b (type by original designation). Eocene, France.
description: Published as part of Hansen, Thomas, 2019, Gastropods from the Cretaceous-Palaeogene boundary in Denmark, pp. 1-196 in Zootaxa 4654 (1) on page 136, DOI: 10.11646/zootaxa.4654.1.1, http://zenodo.org/record/3365803
MOESM5 of Changes of 5-hydroxymethylcytosine distribution during myeloid and lymphoid differentiation of CD34+ cells
Creators: name: Tekpli, Xavier
name: Urbanucci, Alfonso
name: Hashim, Adnan
name: VĂĽgbĂ¸, Cathrine
name: Lyle, Robert
name: Kringen, Marianne
name: Staff, Anne
name: Dybedal, Ingunn
name: Mills, Ian
name: Klungland, Arne
name: Staerk, Judith
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Additional file 5: Table S4. Publically available histone ChIP-seq data sets used.
Use of bracing and EMG biofeedback to investigate the relationship between soleus and gastrocnemius excitation during cycling
Creators: name: Wilkes, Julia
Publisher: name: University of British Columbia
Year: 2009

description: Introduction Our basic understanding of muscle synergies is incomplete. The interaction among the triceps surae muscles (medial and lateral gastrocnemius, soleus) is still under investigation. Studies have shown that these muscles respond differently to cadence manipulations. These excitation differences might relate to the role of gastrocnemius in knee flexion, a role that soleus does not serve. Purpose The purpose was to investigate the response of the medial and lateral gastrocnemius muscles when soleus excitation was eliminated using bracing and biofeedback during cycling. Methods Participants cycled under braced and unbraced conditions over two sessions. During each session, cycling protocol involved a normalization ride with no brace and no feedback, followed by a second ride without feedback, and a prolonged ride with feedback. The biofeedback consisted of a moving bar graph representing the average soleus excitation for the first half of the pedal cycle and was updated with every pedal stroke. Electromyography of seven muscles was collected and analyzed. Results In the unbraced condition, soleus excitation was not modified with visual biofeedback. While wearing the brace, the integrated electromyography (iEMG) of all triceps surae muscles decreased by 30%. With the addition ofEMG biofeedback, soleus and lateral gastrocnemius iEMG decreased a further 26% and 21% respectively by the end of the feedback period while medial gastrocnemius excitation did not change. Tibialis anterior excitation was significantly increased while rectus femoris and biceps femoris excitation did not change. Gluteus maximus iEMG decreased with bracing and biofeedback. Conclusions While unbraced, soleus excitation was not reduced with biofeedback as it is difficult to modify joint position in this learned motor task. When the known task was modified by applying an ankle-foot orthosis, participants successfully modified soleus excitation under less-familiar task requirements. Participants voluntarily activated the tibialis anterior muscle, and it is proposed that through reciprocal inhibition pathways, soleus EMG was reduced. Lateral gastrocnemius excitation also decreased. With soleus excitation decreased, medial gastrocnemius excitation was unchanged likely due to its on going role in knee flexion. This effect was localized to the ankle joint as proximal muscles were unaffected by bracing and by voluntary changes in soleus excitation.
THE IMPORTANCE OF INDIVIDUAL PSYCHOLOGICAL CHARACTERISTICS IN INTERPERSONAL RELATIONSHIPS
Creators: name: Rajapova, Hilola
name: Sherimbetova, Zamira
Publisher: name: Zenodo
Year: 2024

description: In interpersonal relationships, understanding individual psychological characteristics plays a crucial role. These characteristics, including personality traits, attachment styles, and communication styles, shape how individuals perceive and engage in relationships. By delving into these aspects, we can uncover the intricacies that impact our interactions with others. This article aims to explore the significance of individual psychological characteristics in fostering healthy and fulfilling interpersonal relationships.
MOESM3 of Strategies of offspring investment and dispersal in a spatially structured environment: a theoretical study using ants
Creators: name: Cronin, Adam
name: Loeuille, Nicolas
name: Monnin, Thibaud
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3: Figures A1â  A6. This file includes additional figures summarising results from simulations, including summaries of the influence of each of the life-history and environmental parameters over the entire parameter ranges tested.
Quantum mechanics in non-inertial frames: a review
Creators: name: Mohandasan, Anjana
Publisher: name: Zenodo
Year: 2024
Subjects: subject: Quantum physics
subject: non-inertial frames

description: Quantum mechanics as dealt with by standard textbooks is solely concerned with inertial frames of references while most of the physical systems are non-inertial. In this review, we will examine various quantum mechanical systems to understand how the wave function, Schrodinger equation, and physical variables change as the system transitions from an inertial frame to a non-inertial one. We find gauge transformations for wave functions that aid in treating the non-inertial frames as inertial. Physical variables and effective potential may or may not adopt new forms in the altered frame, depending on the coordinate transformation.

Gauge transformations are quite similar to coordinate transformations. Analysis using classical mechanics assists in determining the type of gauge transition needed for a particular coordinate transformation. We look into the applications of phase shifts arising due to various couplings in the non-inertial transformations in quantum systems. The same is investigated from non-relativistic and low-energy relativistic limits. We also study the application of these non-inertial couplings in Spintronics, especially for the production and control of spin current which otherwise used to be a cumbersome task.
Testamento de D. Guindo y Pascual Cerezo : Digital Edition
Creators: name: Leblanc Elina
Publisher: name: Zenodo
Year: 2024
Subjects: Spanish literature
Digital edition
XML-TEI

description: Digital edition of a Spanish pliego de cordel, published by the Andalusian printer José María Moreno (19th c.). It contains the XML-TEI file of the edition, as well as the files that led to this edition, i.e. the digital facsimiles (raw and retouched), the transcription produced by the OCR tool Transkribus (PAGE-XML) and the raw text (.txt). This digital edition is a part of the research project "Desenrollando el cordel / Untangling the cordel / Démêler le cordel" (2020-2024), led by professor Constance Carta at the University of Geneva and supported by the philanthropic Sandoz-Monique de Meuron Family Foundation.
Additional file 2: Table S1. of Genetics and physiology of cell wall polysaccharides in the model C4 grass, Setaria viridis spp
Creators: name: Riksfardini Ermawar
name: Collins, Helen
name: Byrt, Caitlin
name: Henderson, Marilyn
name: OâDonovan, Lisa
name: Shirley, Neil
name: Schwerdt, Julian
name: Lahnstein, Jelle
name: Fincher, Geoffrey
name: Burton, Rachel
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Plant Biology
subject: 60506 Virology

description: Cellulose synthase (CesA) and Cellulose synthase-like (Csl) gene families in S. italica. Table S2. Primer sequences for the amplification of transcripts of control genes and Cellulose synthase-like genes (Csl) F, H and J in S. viridis. (DOCX 19 kb)
Streptochetus Cossmann 1889
Creators: name: Hansen, Thomas
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Neogastropoda
Fasciolariidae
Streptochetus

description: Streptochetus sp. A
Figs 30 N–O
Material. A nearly complete external mould, MGUH 33253, and two incomplete moulds from the uncatalogued old collections at the Natural History Museum of Denmark. The latter two are collected by A. Rosenkrantz at Kirkebraade (19.091927) and Skeldervig (August 1944).
Occurrence. Very rare in the Cerithium Limestone Member, where it has been found at Skeldervig and Højerup, Stevns Klint.
Description. Protoconch conical with between 1 ½ and 2 smooth, convex whorls separated by deep suture; protoconch measuring 0.55 mm in width and 0.35 mm in height.
Teleoconch spire slender with convex whorls separated by moderately deep suture; whorl height less than half the width. Aperture narrowly ovoid with concave, seemingly smooth columella and oblique and wide siphonal canal; height of aperture and siphonal canal corresponding to 45 % of shell height. Siphonal canal short, only half as long as aperture. Fissure or weak pseudoumbilicus present. Siphonal canal with rounded distal end.
Teleoconch sculpture dominated by around eight moderately strong, convex and more or less orthogonal transverse ribs per whorl. Transverse ribs crossed by six fairly broad and flat spiral cords between sutures; transverse ribs highest at periphery, fading out toward sutures; not organized in axial rows. Spiral cords strongest at whorl periphery. Growth lines slightly sigmoid.
Measurements. MGUH 33253 is 9.2 mm high and approximately 3.6 mm wide, consisting of protoconch and six teleoconch whorls.
Remarks. It is not possible to verify whether this taxon carries teeth on the outer lip or not. According to Wenz (1943: p. 1264) the genus should be characterized by a slightly oblique protoconch and a sharply cut distal end of the siphonal canal. Neither feature is observed in the present taxon, which otherwise is well in accord with the diagnostic features of this genus.
description: Published as part of Hansen, Thomas, 2019, Gastropods from the Cretaceous-Palaeogene boundary in Denmark, pp. 1-196 in Zootaxa 4654 (1) on pages 136-137, DOI: 10.11646/zootaxa.4654.1.1, http://zenodo.org/record/3365803
MOESM1 of Changes of 5-hydroxymethylcytosine distribution during myeloid and lymphoid differentiation of CD34+ cells
Creators: name: Tekpli, Xavier
name: Urbanucci, Alfonso
name: Hashim, Adnan
name: VĂĽgbĂ¸, Cathrine
name: Lyle, Robert
name: Kringen, Marianne
name: Staff, Anne
name: Dybedal, Ingunn
name: Mills, Ian
name: Klungland, Arne
name: Staerk, Judith
Publisher: name: Figshare
Year: 2016
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Additional file 1: Table S1. Summary of RRHP sequencing data. Table describes RRHP sequencing depth, percentage of aligned reads, raw and normalized 5hmC counts as well as correlation.
Testamento de D. Guindo y Pascual Cerezo : Digital Edition
Creators: name: Leblanc Elina
Publisher: name: Zenodo
Year: 2021
Subjects: Spanish literature
Digital edition
XML-TEI

description: Digital edition of a Spanish pliego de cordel, published by the Andalusian printer José María Moreno (19th c.). It contains the XML-TEI file of the edition, as well as the files that led to this edition, i.e. the digital facsimiles (raw and retouched), the transcription produced by the OCR tool Transkribus (PAGE-XML) and the raw text (.txt). This digital edition is a part of the research project “Desenrollando el cordel / Untangling the cordel / Démêler le cordel” (2020-2022), led by the professor Constance Carta at the University of Geneva and supported by the philanthropic Sandoz-Monique de Meuron Family Foundation.
Streptochetus Cossmann 1889
Creators: name: Hansen, Thomas
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Neogastropoda
Fasciolariidae
Streptochetus

description: Streptochetus? sp. B
Figs 30 P–Q
Material. A single nearly complete external mould. MGUH 33254 consists of the protoconch and initial six teleoconch whorls collected south of Højerup, Stevns Klint.
Occurrence. The Cerithium Limestone Member south of Højerup, Stevns Klint.
Description. Protoconch obtusely conical, consisting of two smooth whorls with distinct sutural angle; initial whorl small, not inflated.
Teleoconch high-spired, consisting of moderately convex whorls; whorls low, their height corresponding to nearly half their width. Narrow suture located in distinct angle between succeeding whorls, and bordered by weak subsutural collar. Aperture unknown.
Teleoconch sculpture dominated by around 10 strong, rounded transverse ribs partly aligned from whorl to whorl. Ribs giving the whorls a more convex outline. Interstices more or less equal in width to ribs. Spiral riblets strong and sharp, numbering around six. Transverse ribs fading out at transition to base, which is dominated by close lying spiral riblets, becoming gradually finer towards canal.
Measurements. Specimen, MGUH 33254 is more than 6.5 mm high and 2.6 mm wide, consisting of the protoconch and initial six teleoconch whorls. Exposed part of protoconch is 0.6 mm wide and 0.4 mm high.
Remarks. Streptochetus? sp. B differs from Streptochetus sp. A described above from the same beds by the more opisthocline transverse ribs and the weak subsutural collar.
description: Published as part of Hansen, Thomas, 2019, Gastropods from the Cretaceous-Palaeogene boundary in Denmark, pp. 1-196 in Zootaxa 4654 (1) on page 137, DOI: 10.11646/zootaxa.4654.1.1, http://zenodo.org/record/3365803
MOESM2 of Changes of 5-hydroxymethylcytosine distribution during myeloid and lymphoid differentiation of CD34+ cells
Creators: name: Tekpli, Xavier
name: Urbanucci, Alfonso
name: Hashim, Adnan
name: Vågbø, Cathrine
name: Lyle, Robert
name: Kringen, Marianne
name: Staff, Anne
name: Dybedal, Ingunn
name: Mills, Ian
name: Klungland, Arne
name: Staerk, Judith
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Computational Biology

description: Additional file 2: Figure S1. Quantification of 5-methylcytosine using LC/MS/MS. Quantification of 5-methylcytosine (5mC) per 106 unmodified bases in hESC (n = 1), CB-CD34+ (n = 2), CD4+ T cells (n = 3), CD19+ B cells (n = 1), CD14+ monocytes (n = 3), and granulocytes (n = 3) assessed by LC/MS/MS. n indicates the number of independent DNA measured for each cell type. Figure S2: 5hmC at transcription start sites. Average enrichment of 5hmC RRHP reads (signal) along a 100 kb window (a-d) and 5 kb window (e–h) around the transcription start sites (TSS) of high and low expressed genes in the indicated hematopoietic cell types. Mean gene FPKM was used as threshold to dichotomize gene expression in high/low according to RNA-seq data in the same cell-types. Figure S3: 5hmC and histone modifications. Percentage of 5hmC or CCGG sites encompassed in ChIP-seq peaks of indicated histone modifications. The mean percentage of 5hmC in ChIP-seq peaks from two independent RRHP measurements in CB-CD34+ cells and one in BM-CD34+ are shown ± SEM. The mean percentages of CCGG sites found in ChIP-seq peaks of CD34, T cell, monocyte and B cell are shown.*** or * indicate significant difference between CCGG distribution in ChIP-seq peaks versus 5hmC distribution in ChIP-seq peaks of hematopoietic cells. *** p  0.3 and p  1 were plotted. The logarithmic fold change in gene expression needed to be > 2 to define gain or
Testamento de D. Guindo y Pascual Cerezo : Digital Edition
Creators: name: Leblanc Elina
Publisher: name: Zenodo
Year: 2021
Subjects: Spanish literature
Digital edition
XML-TEI

description: Digital edition of a Spanish pliego de cordel, published by the Andalusian printer José María Moreno (19th c.). It contains the XML-TEI file of the edition, as well as the files that led to this edition, i.e. the digital facsimiles (raw and retouched), the transcription produced by the OCR tool Transkribus (PAGE-XML) and the raw text (.txt). This digital edition is a part of the research project "Desenrollando el cordel / Untangling the cordel / Démêler le cordel" (2020-2024), led by the professor Constance Carta at the University of Geneva and supported by the philanthropic Sandoz-Monique de Meuron Family Foundation.
Additional file 2: Figure S2. of Effect of a synbiotic on the response to seasonal influenza vaccination is strongly influenced by degree of immunosenescence
Creators: name: Przemska-Kosicka, Agnieszka
name: Childs, Caroline
name: Sumia Enani
name: Maidens, Catherine
name: Honglin Dong
name: Dayel, Iman
name: Tuohy, Kieran
name: Todd, Susan
name: Gosney, Margot
name: Yaqoob, Parveen
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: FOS: Biological sciences

description: Copy numbers of B. longum + Gl-OS in faecal samples. Data are mean ± 2SEM for n = 58 young and n = 54 older subjects. ☐ Maltodextrin, (gray square) B. longum + Gl-OS. Data were analysed using a Linear Mixed Model (LMM) with fixed factors of time, age and treatment. There were no statistically significant effects, either for combined or separate cohorts. (DOCX 25 kb)
MOESM2 of Nanoproteomic analysis of ischemia-dependent changes in signaling protein phosphorylation in colorectal normal and cancer tissue
Creators: name: Unger, Florian
name: Lange, Nicole
name: KrĂźger, Jana
name: Compton, Carolyn
name: Moore, Helen
name: Lokesh Agrawal
name: Juhl, Hartmut
name: David, Kerstin
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Developmental Biology
subject: Cancer

description: Additional file 2: Figure S1. Unaltered expression and/or phosphorylation of the target signaling protein, EGFR, in response to ischemia. An overview of ischemia-dependent regulation of EGFR in normal and tumor tissue of all patients, analyzed by the MSD technology, is shown. ANOVA, Kruskalâ  Wallis test and Dunn test for multiple comparisons were used for statistical analysis. There were no significant changes detected.
MOESM3 of Changes of 5-hydroxymethylcytosine distribution during myeloid and lymphoid differentiation of CD34+ cells
Creators: name: Tekpli, Xavier
name: Urbanucci, Alfonso
name: Hashim, Adnan
name: VĂĽgbĂ¸, Cathrine
name: Lyle, Robert
name: Kringen, Marianne
name: Staff, Anne
name: Dybedal, Ingunn
name: Mills, Ian
name: Klungland, Arne
name: Staerk, Judith
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3: Table S2. Gene list described in Fig.Â 4a.
Safety behaviours and social anxiety disorder
Creators: name: Plasencia, Melissa Leili
Publisher: name: University of British Columbia
Year: 2010

description: Two studies examine the validity of a modified version of the Social Behaviour Questionnaire (SBQ; Clark, et al. 1995), an unpublished measure of safety behaviours used by people with social anxiety. Study 1 investigated the underlying structure and psychometric properties of the SBQ in a sample of 269 undergraduate students. Results indicate the SBQ subdivides into two categories of safety behaviours: avoidance and self-monitoring. Study 2 replicated these results in a sample of 62 socially anxious individuals from the community. Differential effects of these categories of behaviours on the interpersonal relationship were examined in the community sample using a controlled laboratory social interaction task. Standard multiple regression procedures indicate that avoidant behaviours are negatively associated with likability of participants, whereas self-monitoring behaviours were not significantly associated with likability.
Latirulus Cossmann 1889
Creators: name: Hansen, Thomas
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Neogastropoda
Fasciolariidae
Latirulus

description: Genus Latirulus Cossmann, 1889
Type species. Fusus subaffinis d’Orbigny, 1850b (type by original designation). Eocene, France.
description: Published as part of Hansen, Thomas, 2019, Gastropods from the Cretaceous-Palaeogene boundary in Denmark, pp. 1-196 in Zootaxa 4654 (1) on page 137, DOI: 10.11646/zootaxa.4654.1.1, http://zenodo.org/record/3365803
Additional file 3: Figure S3. of Effect of a synbiotic on the response to seasonal influenza vaccination is strongly influenced by degree of immunosenescence
Creators: name: Przemska-Kosicka, Agnieszka
name: Childs, Caroline
name: Sumia Enani
name: Maidens, Catherine
name: Honglin Dong
name: Dayel, Iman
name: Tuohy, Kieran
name: Todd, Susan
name: Gosney, Margot
name: Yaqoob, Parveen
Publisher: name: Figshare
Year: 2016
Subjects: subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 60506 Virology
subject: Computational Biology

description: Effect of B. longum + Gl-OS on numbers of bifidobacteria in seroconverters vs non converters. Data are mean ± 2SEM for n = 18 seroconverters (to all three subunits) and n = 135 non-converters in the placebo group and n = 14 seroconverters and n = 36 nonconverters in the B. longum + GlOS group. Trend for greater increase in bifidobacteria in seroconverters compared with non-converters in the B. longum + GlOS group (p = 0.057). (DOCX 26 kb)