cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Duplex formation between the template and the nascent strand in the transcription-regulating sequences is associated with the site of template switching in SARS – CoV-2
Creators: name: D’Souza, Aaron R.
name: Buckingham, Amanda B.
name: Salasc, Fanny
name: Ingemarsdotter, Carin K.
name: Iaconis, Gennaro
name: Jarvis, Isobel
name: Groom, Harriet C. T.
name: Kenyon, Julia C.
name: Lever, Andrew M. L.
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Recently published transcriptomic data of the SARS-CoV-2 coronavirus show that there is a large variation in the frequency and steady state levels of subgenomic mRNA sequences. This variation is derived from discontinuous subgenomic RNA synthesis, where the polymerase switches template from a 3ʹ proximal genome body sequence to a 5ʹ untranslated leader sequence. This leads to a fusion between the common 5ʹ leader sequence and a 3ʹ proximal body sequence in the RNA product. This process revolves around a common core sequence (CS) that is present at both the template sites that make up the fusion junction. Base-pairing between the leader CS and the nascent complementary minus strand body CS, and flanking regions (together called the transcription regulating sequence, TRS) is vital for this template switching event. However, various factors can influence the site of template switching within the same TRS duplex. Here, we model the duplexes formed between the leader and complementary body TRS regions, hypothesizing the role of the stability of the TRS duplex in determining the major sites of template switching for the most abundant mRNAs. We indicate that the stability of secondary structures and the speed of transcription play key roles in determining the probability of template switching in the production of subgenomic RNAs. We speculate on the effect of reported variant nucleotide substitutions on our models.
Determination of spin relaxation times in heavy metals via 2nd harmonic spin injection magnetoresistance
Creators: name: Fang, C.
name: Wan, C. H.
name: Liu, X. M.
name: Yang, B. S.
name: Qin, J. Y.
name: Tao, B. S.
name: Wu, H.
name: Zhang, X.
name: Jin, Z. M.
name: Hoffmann, A.
name: Han, X. F.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: In tunnel junctions between ferromagnets and heavy elements with strong spin orbit coupling the magnetoresistance is often dominated by tunneling anisotropic magnetoresistance (TAMR). This makes conventional DC spin injection techniques impractical for determining the spin relaxation time ($τ_s$). Here, we show that this obstacle for measurements of $τ_s$ can be overcome by 2nd harmonic spin-injection-magnetoresistance (SIMR). In the 2nd harmonic signal the SIMR is comparable in magnitude to TAMR, thus enabling Hanle-induced SIMR as a powerful tool to directly determine $τ_s$. Using this approach we determined the spin relaxation time of Pt and Ta and their temperature dependences. The spin relaxation in Pt seems to be governed by Elliott-Yafet mechanism due to a constant resistivity $\times$spin relaxation time product over a wide temperature range.
description: 7 pages, 4 figures
АНАЛИТИЧЕСКИЕ ВОЗМОЖНОСТИ МЕТОДОВ ОПРЕДЕЛЕНИЯ КСЕНОБИОТИКОВ РАСТИТЕЛЬНОГО ПРОИСХОЖДЕНИЯ В САХАРИСТЫХ ПРОДУКТАХ
Creators: name: РОЕВА Н.Н.
name: МОЙСЕЯК М.Б.
name: ЯНКОВСКИЙ С.А.
name: ЗАЙЦЕВ Д.А.
Publisher: name: Сахар
Year: 2016
Subjects: САХАРИСТЫЕ ПРОДУКТЫ
КСЕНОБИОТИКИ
XENOBIOTICS
АНАЛИЗ
ANALYSIS
ПРЕДЕЛ ОБНАРУЖЕНИЯ
DETECTION LIMIT
ТОЧНОСТЬ
ACCURACY
ЧУВСТВИТЕЛЬНОСТЬ
SENSIBILITY
SUGAR-CONTAINING PRODUCTS

description: В статье описаны методы определения ксенобиотиков растительного происхождения в сахаристых продуктах, наиболее широко применяемые в аналитической практике, и оценены их возможности с позиций чувствительности, точности, воспроизводимости и простоты выполнения анализа.The paper describes most widely applicable in analytical practices methods defining xenobiotics of phytogenic origin in sugar-containing products. Analysis of sensibility, accuracy, reproducibility and simplicity of the methods is done.
Additional file 2 of Palm oil protects α-linolenic acid from rumen biohydrogenation and muscle oxidation in cashmere goat kids
Creators: name: Wang, Xue
name: Martin, Graeme B.
name: Wen, Qi
name: Liu, Shulin
name: Li, Yinhao
name: Shi, Binlin
name: Guo, Xiaoyu
name: Zhao, Yanli
name: Guo, Yangdong
name: Yan, Sumei
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Computational Biology

description: Additional file 2: Figure S1. The OTU rarefaction curves of the ruminal digesta bacterial communities. Curves were drawn using the least sequenced sample as upper limit for the rarefactions. Each color represents a dietary treatment: PMO (red); LSO (blue); MIX (green).
title: ADCO, Cartulaire de l'office de la Porte de l'abbaye de Cîteaux, Registrum possessionum porte Cistercii (début XVe siècle), Cart. 172 (11 H 69), 115 folios, f. 0171
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire
subject: LaMOP

description: Cartulaire de l'office de la Porte de l'abbaye de Cîteaux, Registrum possessionum porte Cistercii (début XVe siècle), Archives départementales de la Côte-d'Or, Cart. 172 (11 H 69), 115 folios, f. 0171, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de l'office de la Porte de l'abbaye de Cîteaux, Registrum possessionum porte Cistercii (début XVe siècle), Archives départementales de la Côte-d'Or, Cart. 172 (11 H 69), 115 folios, f. 0171, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Additional file 1: Table S1. of CSmetaPred: a consensus method for prediction of catalytic residues
Creators: name: Choudhary, Preeti
name: Shailesh Kumar
name: Bachhawat, Anand
name: Pandit, Shashi
Publisher: name: figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Computational Biology

description: Datasets used in present work. List of pdb entries along with known catalytic residues from six datasets. (PDF 576Â kb)
Lettre de Antoine Gouan à Jean-François Séguier, 1774-09-20
Creators: name: Gouan, Antoine
name: Gouan, Antoine
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2022
Subjects: Botanique

description: [fol. 187] Les malheurs que nous avons éprouvé m’ont empêché, mon cher ami, m’ont empêché de vous écrire. Je crois qu’ils seront bientôt à leur terme, et que tout tournera à notre satisfaction. J’ai tout lieu d’en être convaincu.
M. Baux nous a remis quelques bulbes de ma part. Vous aurez la bonté d’examiner les Lichen que je vous envoie et de m’en dire votre avis quand vous le pourrez. Avez-vous d’autres plantes sèches à m’envoyer ? Avez-vous des graines de l’Angleica razuli, ou des plans racinés à me donner, ceux-ci me seraient encore plus agréables et c’est le moment de me l’envoyer. Je vous enverrai si vous voulez des plans de l’Angelica verticillaris, M. Baux à qui j’en envoie pourra vous en donner. Je suis tout à vous pour la vie et votre ami. Gouan.

Montpellier 20 septembre 1774.
description: Source: [établissement de conservation] Nîmes, Bibliothèque Carré d'Art [cote] ms. 144, fol. 187
Constitutive and variable 2’-O-methylation (Nm) in human ribosomal RNA
Creators: name: Motorin, Yuri
name: Quinternet, Marc
name: Rhalloussi, Wassim
name: Marchand, Virginie
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Cancer

description: Epitranscriptomic modifications of stable RNAs are dynamically regulated and specific profiles of 2ʹ-O-methylation in rRNA have been associated with distinct cancer types. However, these observations pointed out the existence of at least two distinct groups: a rather large group with constitutive rRNA Nm residues exhibiting a stable level of methylation and a more restricted set of variable modifications, giving rise to the concept of ‘specialized ribosomes’. These heterogeneous ribosomes can modulate their translational properties and be key regulatory players, depending on the physiological state of the cell. However, these conclusions were drawn from a limited set of explored human cell lines or tissues, mostly related to cancer cells of the same type. Here, we report a comprehensive analysis of human rRNA Nm modification variability observed for >15 human cell lines grown in different media and conditions. Our data demonstrate that human Nm sites can be classified into four groups, depending on their observed variability. About ⅓ of rRNA 2ʹ-O-methylations are almost invariably modified at the same level in all tested samples (stable modifications), the second group of relatively invariant modifications (another ½ of the total) showing a slightly higher variance (low variable group) and two variable groups, showing an important heterogeneity. Mapping of these four classes on the human ribosome 3D structure shows that stably modified positions are preferentially located in the important ribosome functional sites, while variable and highly variable residues are mostly distributed to the ribosome periphery. Possible relationships of such stable and variable modifications to the ribosome functions are discussed.
title: How to Cope With Heavy Metal Ions: Cellular and Proteome-Level Stress Response to Divalent Copper and Nickel in Halobacterium salinarum R1 Planktonic and Biofilm Cells
Creators: name: Völkel, Sabrina
name: Hein, Sascha
name: Benker, Nathalie
name: Pfeifer, Felicitas
name: Lenz, Christof
name: Losensky, Gerald
Publisher: name: Frontiers
Year: 2020

description: Halobacterium salinarum R1 is an extremely halophilic archaeon capable of adhesion and forming biofilms, allowing it to adjust to a range of growth conditions. We have recently shown that living in biofilms facilitates its survival under Cu2+ and Ni2+ stress, with specific rearrangements of the biofilm architecture observed following exposition. In this study, quantitative analyses were performed by SWATH mass spectrometry to determine the respective proteomes of planktonic and biofilm cells after exposition to Cu2+ and Ni2+.Quantitative data for 1180 proteins were obtained, corresponding to 46% of the predicted proteome. In planktonic cells, 234 of 1180 proteins showed significant abundance changes after metal ion treatment, of which 47% occurred in Cu2+ and Ni2+ treated samples. In biofilms, significant changes were detected for 52 proteins. Only three proteins changed under both conditions, suggesting metal-specific stress responses in biofilms. Deletion strains were generated to assess the potential role of selected target genes. Strongest effects were observed for 1OE5245F and 1OE2816F strains which exhibited increased and decreased biofilm mass after Ni2+ exposure, respectively. Moreover, EPS obviously plays a crucial role in H. salinarum metal ion resistance. Further efforts are required to elucidate the molecular basis and interplay of additional resistance mechanisms.
Isolated pulsar population synthesis with simulation-based inference
Creators: name: Graber, Vanessa
name: Ronchi, Michele
name: Pardo-Araujo, Celsa
name: Rea, Nanda
Publisher: name: arXiv
Year: 2023
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Machine Learning (cs.LG)
subject: Machine Learning (stat.ML)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: We combine pulsar population synthesis with simulation-based inference (SBI) to constrain the magnetorotational properties of isolated Galactic radio pulsars. We first develop a framework to model neutron star birth properties and their dynamical and magnetorotational evolution. We specifically sample initial magnetic field strengths, $B$, and spin periods, $P$, from lognormal distributions and capture the late-time magnetic field decay with a power law. Each lognormal is described by a mean, $μ_{\log B}, μ_{\log P}$, and standard deviation, $σ_{\log B}, σ_{\log P}$, while the power law is characterized by the index, $a_{\rm late}$. We subsequently model the stars' radio emission and observational biases to mimic detections with three radio surveys, and we produce a large database of synthetic $P$--$\dot{P}$ diagrams by varying our five magnetorotational input parameters. We then follow an SBI approach that focuses on neural posterior estimation and train deep neural networks to infer the parameters' posterior distributions. After successfully validating these individual neural density estimators on simulated data, we use an ensemble of networks to infer the posterior distributions for the observed pulsar population. We obtain $μ_{\log B} = 13.10^{+0.08}_{-0.10}$, $σ_{\log B} = 0.45^{+0.05}_{-0.05}$ and $μ_{\log P} = -1.00^{+0.26}_{-0.21}$, $σ_{\log P} = 0.38^{+0.33}_{-0.18}$ for the lognormal distributions and $a_{\rm late} = -1.80^{+0.65}_{-0.61}$ for the power law at the $95\%$ credible interval. We contrast our results with previous studies and highlight uncertainties of the inferred $a_{\rm late}$ value. Our approach represents a crucial step toward robust statistical inference for complex population synthesis frameworks and forms the basis for future multiwavelength analyses of Galactic pulsars.
description: 31 pages, 16 figures, 5 tables, 2 appendices; published version
Additional file 3 of Baseline sensitivity and resistance risk assessment of Valsa mali to pyraclostrobin
Creators: name: Feng, Hao
name: Wang, Shuai
name: Liu, Zhaoyang
name: Miao, Jianqiang
name: Zhou, Mingxia
name: Huang, Lili
Publisher: name: figshare
Year: 2020
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Evolutionary Biology
subject: Ecology
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Additional file 3: Table S3. Details of 120 Valsa mali isolates used in this study.
Self-interacting dark matter interpretation of Crater II
Creators: name: Zhang, Xingyu
name: Yu, Hai-Bo
name: Yang, Daneng
name: An, Haipeng
Publisher: name: arXiv
Year: 2024
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The satellite galaxy Crater II of the Milky Way is extremely cold and exceptionally diffuse. These unusual properties are challenging to understand in the standard model of cold dark matter. We investigate the formation of Crater II in self-interacting dark matter (SIDM), where dark matter particles can scatter and thermalize. We conduct a series of controlled N-body simulations to model the tidal evolution of Crater II, varying the self-interacting cross section, orbit parameters, and initial stellar distribution. Dark matter self-interactions lead to halo core formation and the distribution of stars expands accordingly. A cored SIDM halo also boosts tidal mass loss, allowing for a high orbit. Our simulations show that SIDM halos with a $1~{\rm kpc}$ core can simultaneously explain the low stellar velocity dispersion and the large half-light radius of Crater II, remaining robust to the initial distribution of stars. For the orbit motivated by the measurements from Gaia Early Data Release 3, the favored self-interacting cross section is approximately $60~{\rm cm^2/g}$ on the mass scale of Crater II.
description: 9 pages, 5 figures; Revised for publication in The Astrophysical Journal Letters
Terrestrial Planets Formation under Migration: the Systems near 4:2:1 Mean Motion Resonance
Creators: name: Sun, Zhao
name: Ji, Jianghui
name: Wang, Su
name: Jin, Sheng
Publisher: name: arXiv
Year: 2017
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: In this work, we extensively investigate the formation of near 4:2:1 mean motion resonances (MMRs) configuration by performing two sets of N-body simulations. We model the eccentricity damping, gas drag, type I and type II planetary migration of planetesimals, planetary embryos and giant planets in the first sets. For the simulations of giant planets with type II migration, the massive terrestrial planets, with a mass up to several Earth masses, are likely produced in the systems. We further show that by shepherding and/or scattering mechanisms through Jovian planet's type II migration, the terrestrial planets and giant planets in the systems can be evolved into a near 4:2:1 MMRs. Moreover, the models are applicable to the formation of Kepler-238 and 302 systems. In the second set, we study the 4:2:1 MMRs formation in the terrestrial planetary systems, where the planets undergo type I migration and eccentricity damping. By considering type I migration, $\sim$ 17.1\% of the simulations indicate that terrestrial planets are evolved into 4:2:1 MMRs. However, this probability should depend on the initial conditions of planets. Hence, we conclude that both type I and type II migration can play a crucial role in close-in terrestrial planet formation.
description: 18 pages, 9 figures, 3 tables, accepted to MNRAS
Study Of Led Lamps Technologies Impact On The Utility
Creators: name: Szwal, Ewelina
name: Puga, José Teixeira
name: Ferreira, Maria Judite
name: Gomes, António Augusto Araújo
Publisher: name: Neutro à Terra
Year: 2017

description: With the growing interest in the issue of reducing power consumption in electricity applications, energy-saving devises and the problem of their operation gains more attention. The increase in the utilization of energy-saving lamps, especially LED lamps, leads to the wide interest in their influence on the power system. The impact of discussed devices on the voltage and current in the grid must be thoroughly studied before launching devices into the market. The studies undertaken on the LED lamps present in a wide range the issue of harmonic emission from lamps and their influence on power quality. Due to many manufacturing technologies, different LED devices can have various effects on the utility. It is significant to carry out researches concerning the adverse effects of energy-saving lamps in order to utilize devices that meet certain requirements which are set by the international commissions.
description: Neutro à Terra, n. 17 (2016): Revista Técnico-Científica (Primeiro Semestre)
Mobilidade Elétrica
Creators: name: Andrade, António Carvalho De
Publisher: name: Neutro à Terra
Year: 2016

description: No último século, a utilização de combustíveis fosseis permitiram uma acelerada industrialização intimamente associada a consumos crescentes de energia. Mas a sua utilização não é neutra do ponto de vista ambiental, pois liberta gases de efeito de estufa (GEE), que estão a alterar o equilíbrio da nossa atmosfera que existia no período préindustrial. Apoiado em estudos científicos cada vez mais credibilizados pela comunidade científica, o poder político está consciente das suas consequências climáticas, e por isso empenhado em mudar a matriz energética com vista a uma redução progressiva dos GEE.
description: Neutro à Terra, n. 17 (2016): Revista Técnico-Científica (Primeiro Semestre)
$G$-Strands on symmetric spaces
Creators: name: Arnaudon, Alexis
name: Holm, Darryl D.
name: Ivanov, Rossen I.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: We study the $G$-strand equations that are extensions of the classical chiral model of particle physics in the particular setting of broken symmetries described by symmetric spaces. These equations are simple field theory models whose configuration space is a Lie group, or in this case a symmetric space. In this class of systems, we derive several models that are completely integrable on finite dimensional Lie group $G$ and we treat in more details examples with symmetric space $SU(2)/S^1$ and $SO(4)/SO(3)$. The later model simplifies to an apparently new integrable $9$ dimensional system. We also study the $G$-strands on the infinite dimensional group of diffeomorphisms, which gives, together with the Sobolev norm, systems of $1+2$ Camassa-Holm equations. The solutions of these equations on the complementary space related to the Witt algebra decomposition are the odd function solutions.
description: To appear in Proceedings of the Royal Society A
Avaliação dos Primeiros 6 Anos de uma Microprodução Fotovoltaica
Creators: name: Andrade, António Carvalho De
Publisher: name: Neutro à Terra
Year: 2016

description: As energias fósseis foram um fator vital para a industrialização até à atualidade. Mas a sua utilização não é neutra do ponto de vista ambiental, pois são libertados gases de efeito de estufa (GEE), que estão a alterar o equilíbrio da nossa atmosfera que existia no período pré-industrial. Apoiado em estudos científicos cada vez mais credibilizados pela comunidade científica, o poder político está a ficar cada vez mais consciente das suas consequências climáticas, e por isso empenhado em mudar a matriz energética com vista à sua progressiva redução, substituindo-as por energias renováveis. Por outro lado, o custo unitário de produção de energia elétrica a partir da energia solar e eólica, devido à progressiva evolução tecnológica que se está a verificar na sua conversão, está continuamente a baixar, concorrendo já em mercado em igualdade de circunstâncias com as energias fosseis, permitindo dessa forma a anulação de subsídios que foram inicialmente necessários para que fosse viável economicamente a sua exploração. Portugal não é exceção, e para cumprir compromissos internacionais de redução de produção de GEE, tem incrementado a exploração de energias renováveis endógenas, como a energia eólica, solar e biomassa, baixando a utilização e dependência das energias fósseis, que na sua totalidade são importadas. Neste sentido foi publicado o Decreto-Lei n.º 363/2007, abrindo a possibilidade da instalação de microprodução por particulares, que é o caso descrito neste artigo, pois a microprodução fotovoltaica está localizada na residência do autor.
description: Neutro à Terra, n. 18 (2016): Revista Técnico-Científica (Segundo Semestre)
Black Holes and Marchenko-Pastur Distribution
Creators: name: Mück, Wolfgang
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: The universal eigenvalue distribution characterizing the Gram matrix of semiclassical ensembles of black hole microstates is recognized as the Marchenko-Pastur distribution, which plays a prominent role as the universal limit distribution in a large class of random matrix and vector models. It is proposed that this distribution also universally determines the energy spectral density of black holes, which allows to construct a Krylov space for the time evolution of typical black hole states and calculate their state complexity. It is checked that the state complexity growth at late times saturates Lloyd's bound. Some implications of the proposed spectral density for the generation of Hawking radiation and black hole evaporation are discussed.
description: 24 pages, 3 figures, v2, v3: references added, small changes
Wireless physiological signal acquisition system
Creators: name: Meggitt, Thomas
Publisher: name: Macquarie University
Year: 2022
Subjects: Other education not elsewhere classified

description: Early detection of hearing difficulties in infants is pivotal to their growth and development in later stages of life. Cortical Auditory Evoked Potentials (CAEP) testing is used to determine the hearing thresholds of non-responsive patients such as infants. In this research thesis a method to wirelessly transmit various segments of the CAEP test system is devised and a prototype is developed that will utilise offline processing. The thesis will anlyse the effect of the wireless system on on the accuracy of the test due to electromagnetic interference caused by the transmission of the signals. The thesis will draw upon comparisons with current leading systems to aid in the analysis of results. The thesis results show the CAEP test can be successfully conducted using a wireless system utilising offline processing to present results. The results also show there is a presence of electromagnetic interference in the recordings, however due to the current processing the interference will only be present in the processed response if two conditions are met: firstly, if the transmission frequency is less than 30Hz, and secondly, if the transmission is time locked to the stimulus presentation. Further research is recommended in the areas of user ability and reliability in the system.
MOESM4 of Age-based partitioning of individual genomic inbreeding levels in Belgian Blue cattle
Creators: name: SolĂŠ, Marina
name: Ann-Stephan Gori
name: Faux, Pierre
name: Bertrand, Amandine
name: FrĂŠdĂŠric Farnir
name: Gautier, Mathieu
name: Druet, Tom
Publisher: name: figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 4. Figure S3. Distribution of length of HBD segments identified with whole-genome sequence data and using models with different numbers of HBD classes.
Additional file 2 of Baseline sensitivity and resistance risk assessment of Valsa mali to pyraclostrobin
Creators: name: Feng, Hao
name: Wang, Shuai
name: Liu, Zhaoyang
name: Miao, Jianqiang
name: Zhou, Mingxia
name: Huang, Lili
Publisher: name: figshare
Year: 2020
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Evolutionary Biology
subject: Ecology
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Additional file 2: Table S2. Sensitivity of 120 Valsa mali isolates to pyraclostrobin.
Optimising decision-making in the management of dysplasia in inflammatory bowel disease
Creators: name: Kabir, Misha Seemeen
Publisher: name: Imperial College London
Year: 2022

description: The aims of this thesis have been to build on the existing literature on colitis-associated dysplasia by developing a better understanding of the associated cancer risk in patients with inflammatory bowel disease (IBD), the factors that influence their management decision-making and the tools needed to optimise confidence and satisfaction in the process. A systematic review and meta-analysis suggest that dysplasia detected during surveillance in the more modern videoendoscopic era is associated with lower rates of incidental cancers found at colectomy than previously thought, and low rates of progression to more advanced neoplasia after complete endoscopic resection of visible dysplasia. A multicentre retrospective review into the potential aetiology of post-colonoscopy colorectal cancer diagnoses in patients with IBD colitis has shown that the majority were explained by suboptimal quality endoscopic surveillance. However, some cases highlighted the limitations of surveillance, due to the aggressive nature of IBD cancers and patients declining recommended cancer-preventative colectomy. An in-depth mixed-methods study undertaken with patients with IBD revealed an overestimation in the efficacy of surveillance and high tolerance of cancer risk to avoid their quality of life being disrupted by stoma, pouch and surgical complications. Positive clinical team behaviours, including providing transparent and personalised risk information, were associated with greater decision confidence. A survey study of IBD clinicians found that they lacked a clear understanding of the cancer risk associated with dysplasia and their management practices did not always adhere to recent international clinical guidance. Therefore, to communicate more personalised risk to colitis patients with low-grade dysplasia, an advanced neoplasia risk prediction web-tool UC-CaRE (www.uc-care.uk) has been developed and externally validated. Finally, the work from all prior chapters has been consolidated to help inform the development of international Delphi-derived consensus statements and clinician and patient decision aids, with the aim of standardising management practice and improve dysplasia management counselling for future patients.
Fundamentos da Deteção Automática de Incêndios em Edifícios Parte 2
Creators: name: Gomes, António Augusto Araújo
Publisher: name: Neutro à Terra
Year: 2016

description: Conforme referido no parágrafo 3 do artigo publicado no número 17 da revista Neutro à Terra, existem no mercado, diversos tipos de detetores automáticos de incêndio. Os detetores de incêndio são normalmente concebidos para detetar uma ou mais características de um incêndio: fumo, calor, radiação (chama) e outros produtos de combustão. Cada tipo de detetor responde com rapidez diferente aos diferentes tipos de incêndio.
description: Neutro à Terra, n. 18 (2016): Revista Técnico-Científica (Segundo Semestre)
Definition of the Riesz Derivative and its Application to Space Fractional Quantum Mechanics
Creators: name: Bayin, Selçuk Ş.
Publisher: name: arXiv
Year: 2016
Subjects: subject: General Physics (physics.gen-ph)
subject: FOS: Physical sciences

description: We investigate and compare different representations of the Riesz derivative, which plays an important role in anomalous diffusion and space fractional quantum mechanics. In particular, we show that a certain representation of the Riesz derivative that is generally given as also valid for order alpha equals 1, behaves no differently than the other definition given in terms of its Fourier transform. In the light of this, we discuss the alpha goes to 1 limit of the space fractional quantum mechanics and its consistency.
Vacuum zero point energy of self-interacting quantum fields in dS background
Creators: name: Firouzjahi, Hassan
name: Sheikhahmadi, Haidar
Publisher: name: arXiv
Year: 2024
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We consider self-interacting scalar fields with a conformal coupling in the dS background and study the quantum corrections from bubble loop diagrams. Incorporating the perturbative in-in formalism, we calculate the quantum corrections in the vacuum zero point energy and pressure of self-interacting fields with the potential $V \propto Φ^n $ for even values of $n$. We calculate the equation of state corresponding to these quantum corrections and examine the scaling of the divergent terms in the vacuum zero point energy and pressure associated to the dimensional regularization scheme. In particular, we show that for quartic self-interacting scalar field the conformal invariance is respected at two-loop order at the conformal point.
description: 21 Pages, 4 figures
MOESM3 of Age-based partitioning of individual genomic inbreeding levels in Belgian Blue cattle
Creators: name: Solé, Marina
name: Ann-Stephan Gori
name: Faux, Pierre
name: Bertrand, Amandine
name: Farnir, Frédéric
name: Gautier, Mathieu
name: Druet, Tom
Publisher: name: figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3. Figure S2. Comparison of genomic inbreeding coefficients estimated with different marker densities (LD panel in black, 50 K panel in red, BovineHD panel in green and WGS panel in blue) and for different base populations. Genomic inbreeding coefficients were estimated with the Mix14R model (13 HBD-classes model with pre-defined R k rates) for 634 Belgian Blue sires. Different base populations were obtained by selecting different thresholds T that determine which HBD-classes were considered in the estimation of F G-T (e.g., setting the base population approximately 0.5 * T generations in the past).
WZ Sge: an eclipsing cataclysmic variable evolving towards the period minimum
Creators: name: Han, Z. -T.
name: Qian, S. -B.
name: Voloshina, Irina
name: Zhu, L. -Y.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We present the photometric results of the eclipsing cataclysmic variable (CV) WZ Sge near the period minimum ($P_{min}$). Eight new mid-eclipse times were determined and the orbital ephemeris was updated. Our result shows that the orbital period of WZ Sge is decreasing at a rate of $\dot{P}=-2.72(\pm0.23)\times{10^{-13}}\,s s^{-1}$. This secular decrease, coupled with previous detection of its donor, suggest that WZ Sge is a pre-bounce system. Further analysis indicates that the observed period decrease rate is about $1.53$ times higher than pure gravitational radiation (GR) driving. We constructed the evolutionary track of WZ Sge, which predicts that $P_{min}$ of WZ Sge is $\sim77.98 (\pm0.90)$ min. If the orbital period decreases at the current rate, WZ Sge will evolve past its $P_{min}$ after $\sim25.3$ Myr. Based on the period evolution equation we find $\dot{M}_{2}\simeq4.04(\pm0.10)\times10^{-11}M_{\odot}yr^{-1}$, which is compatible with the current concept of CV evolution at ultrashort orbital periods.
description: 8 pages, 5 figures
title: ADCO, Cartulaire de l'abbaye de Cîteaux dit Cartulare Antiquum t.3 (2e moitié XIIIe siècle), Cart. 168 (11 H 66), f. 0076r
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2010
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire

description: Cartulaire de l'abbaye de Cîteaux dit Cartulare Antiquum t.3 (2e moitié XIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 168 (11 H 66), f. 0076r, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de l'abbaye de Cîteaux dit Cartulare Antiquum t.3 (2e moitié XIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 168 (11 H 66), f. 0076r, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
Radio detection of extensive air showers
Creators: name: Huege, Tim
Publisher: name: arXiv
Year: 2017
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: Radio detection of extensive air showers initiated in the Earth's atmosphere has made tremendous progress in the last decade. Today, radio detection is routinely used in several cosmic-ray observatories. The physics of the radio emission in air showers is well-understood, and analysis techniques have been developed to determine the arrival direction, the energy and an estimate for the mass of the primary particle from the radio measurements. The achieved resolutions are competitive with those of more traditional techniques. In this article, I shortly review the most important achievements and discuss the potential for future applications.
description: To appear in NIM A as part of the proceedings of the RICH2016 conference, Bled, Slovenia
Additional file 2: of Doctorsâ opinion on the contribution of coordination mechanisms to improving clinical coordination between primary and outpatient secondary care in the Catalan national health system
Creators: name: Marta-Beatriz Aller
name: Vargas, Ingrid
name: Coderch, Jordi
name: Maria-Luisa VĂĄzquez
Publisher: name: figshare
Year: 2017
Subjects: subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Marine Biology
subject: Computational Biology

description: Mechanisms identified by doctors as contributing to clinical coordination between primary and outpatient secondary care in the studied healthcare networks. (DOCX 18 kb)
title: ADCO, Cartulaire de Cîteaux pour les possessions de Chaugey et Maison-Dieu (Fin XVe siècle), Cart. 181 (11 H 754), 165 folios, f. 0263
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: Petot, Frédéric
name: CG21/F.PETOT/2017
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire

description: Cartulaire de Cîteaux pour les possessions de Chaugey et Maison-Dieu (Fin XVe siècle), Archives départementales de la Côte-d'Or, Cart. 181 (11 H 754), 165 folios, f. 0263, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de Cîteaux pour les possessions de Chaugey et Maison-Dieu (Fin XVe siècle), Archives départementales de la Côte-d'Or, Cart. 181 (11 H 754), 165 folios, f. 0263, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Additional file 1 of Association between preoperative sarcopenia and prognosis of pancreatic cancer after curative-intent surgery: a updated systematic review and meta-analysis
Creators: name: Liu, Chenming
name: An, Liang
name: Zhang, Siyuan
name: Deng, Shiqing
name: Wang, Neng
name: Tang, Haijun
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 1.
Neutron powder diffraction study on the iron-based nitride superconductor ThFeAsN
Creators: name: Mao, Huican
name: Wang, Cao
name: Maynard-Casely, Helen E.
name: Huang, Qingzhen
name: Wang, Zhicheng
name: Cao, Guanghan
name: Li, Shiliang
name: Luo, Huiqian
Publisher: name: arXiv
Year: 2017
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Materials Science (cond-mat.mtrl-sci)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We report neutron diffraction and transport results on the newly discovered superconducting nitride ThFeAsN with $T_c=$ 30 K. No magnetic transition, but a weak structural distortion around 160 K, is observed cooling from 300 K to 6 K. Analysis on the resistivity, Hall transport and crystal structure suggests this material behaves as an electron optimally doped pnictide superconductors due to extra electrons from nitrogen deficiency or oxygen occupancy at the nitrogen site, which together with the low arsenic height may enhance the electron itinerancy and reduce the electron correlations, thus suppress the static magnetic order.
description: 4 pages, 4 figures, Accepted by EPL
Probing Neutrino Oscillations with Reactor Antineutrinos in JUNO
Creators: name: Cerrone, Vanessa
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: Instrumentation and Detectors (physics.ins-det)
subject: FOS: Physical sciences

description: The Jiangmen Underground Neutrino Observatory (JUNO) is a multi-purpose neutrino experiment currently under construction in South China, in an underground laboratory with approximately 650 m of rock overburden (1800 m.w.e.). The detector consists of a 20 kton liquid scintillator target, contained inside a 35.4-meter-diameter spherical acrylic vessel. The central detector (CD) is equipped with 17,612 20-inch and 25,600 3-inch Photomultipliers Tubes (PMTs), providing more than 75% total photocathode coverage. JUNO's main goal is the determination of the neutrino mass ordering with reactor antineutrinos, emitted from two adjacent nuclear power plants on a ~52.5 km baseline from the experimental site. JUNO's strategic location at a baseline corresponding to the first solar oscillation maximum, where the kinematic phase $Δ_{21} \simeq \fracπ{2}$, grants it the unique capability to simultaneously probe the effects of oscillations on both solar and atmospheric scales; moreover, it stands out as the first experiment to address the unresolved NMO question through vacuum-dominant oscillations. The oscillated energy spectrum in JUNO changes subtly depending on the neutrino mass ordering, which manifests as an energy-dependent phase shift, thus providing sensitivity to this parameter. Furthermore, the unparalleled size and energy resolution will enable to achieve a sub-percent precision on three parameters: $Δm_{21}^{2}$, $Δm_{31}^{2}$, and $\sin^2θ_{12}$. This contribution will focus on JUNO's oscillation physics potential with reactor antineutrinos, with a particular emphasis on its crucial role in inaugurating a new era of precision within the neutrino sector.
description: Poster + short talk presented at NuPhys2023 (London, 18-20 December 2023). 6 pages, 7 figures
Integrated photonics for mid-infrared stellar interferometry
Creators: name: Gretzinger, Thomas
Publisher: name: Macquarie University
Year: 2022
Subjects: Other education not elsewhere classified

description: Nulling-interferometry is a powerful tool to advance beyond the resolving power of ground based observatories with the prospect of directly detecting exoplanets. By suppressing the radiation of the host star through destructive interference, the emission from a young planet can be observed. A favourable contrast between a planet and a star as well as reduced atmospheric disturbances are found centered around 4 µm wavelength. For high stability and robustness, it is preferable to deploy integrated optics devices based on waveguide technology. Their advancement however is hindered in the mid-infrared wavelength range due to the lack of suitable host materials as well as compatible manufacturing techniques to fabricate low loss photonic devices. This thesis details the development of mid-infrared optical waveguides and the key components for an integrated nulling interferometer chip in gallium-lanthanum-sulphur glass, utilising femtosecond laser direct-writing. By combining the multiscan technique with the cumulative heating fabrication, single-mode waveguides with a propagation loss of 0.22±0.02 dB/cm at 4 µm were realised. Evidence of structural changes and ion migration in these positive refractive index waveguides are presented using Raman spectroscopy and electron probe micro-analysis (EPMA), respectively. 2-D Raman maps revealed full-width at half maximum variations and a peak shift in the symmetric vibrations of the GaS4 main Raman band. The 2-D spectral map of the Boson peak band was used to understand and identify the material densification profile in a high refractive index glass waveguide. EPMA provided evidence of sulphur ion migration and the observation of an anion (S2) migration causing material modification. These low-loss waveguides were the foundation of S-bends with a negligible bending loss and Y-splitters with a 50/50 power division across a 600 nm wavelength window. Directional couplers were developed from symmetric into asymmetric directional couplers with a 50/50power splitting ratio over a broad wavelength range (3.8 - 4.05 µm). Furthermore, multimode interference couplers are presented with an even splitting capability between 3.75 - 4.25 µm with no polarisation dependency. Both types of couplers feature a high broadband extinction ratio. These main building blocks are developed to create a future compact nulling interferometer with a total projected intrinsic loss of < 1 dB, a value that is sufficient to perform future on-sky experiments in relatively short observation runs on ground based telescopes.