cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1 of Feasibility and preliminary efficacy of a combined virtual reality, robotics and electrical stimulation intervention in upper extremity stroke rehabilitation
Creators: name: Norouzi-Gheidari, Nahid
name: Archambault, Philippe S.
name: Monte-Silva, Katia
name: Kairy, Dahlia
name: Sveistrup, Heidi
name: Trivino, Michael
name: Levin, Mindy F.
name: Marie-Hélène Milot
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1. Supplementary Table A: Changes in score between baseline and post-treatment measurements. The results are illustrated in Figures 3 to 6.
Spatial Climate-Economic Models in the Design of Optimal Climate Policies across Locations
Creators: name: Brock, William A.
name: Engstrom, Gustav
name: Xepapadeas, Anastasios
name: Brock, William A.
name: Engstrom, Gustav
name: Xepapadeas, Anastasios
Publisher: name: Unknown
Year: 2012
Subjects: subject: Environmental Economics and Policy
subject: One-dimensional Energy Balance Model
subject: Heat Transport
subject: Latitudes
subject: Temperature Distribution
subject: Damage Distribution
subject: Social Planner
subject: Competitive Equilibrium
subject: Local Welfare Weights
subject: Optimal Taxes

description: We couple a one-dimensional energy balance climate model with heat transportation across latitudes, with an economic growth model. We derive temperature and damage distributions across locations and optimal taxes on fossil fuels which, in contrast to zero-dimensional Integrated Assessment Models, account for cross latitude externalities. We analyse the impact of welfare weights on the spatial structure of optimal carbon taxes and identify conditions under which these taxes are spatially nonhomogeneous and are lower in latitudes with relatively lower per capita income populations. We show the way that heat transportation affects local economic variables and taxes, and locate sufficient conditions for optimal mitigation policies to have rapid ramp-up initially and then decrease over time.
Excitation of bound states in the continuum via second harmonic generations
Creators: name: Yuan, Lijun
name: Lu, Ya Yan
Publisher: name: arXiv
Year: 2019
Subjects: subject: Pattern Formation and Solitons (nlin.PS)
subject: FOS: Physical sciences

description: A bound state in the continuum (BIC) on a periodic structure sandwiched between two homogeneous media is a guided mode with a frequency and a wavenumber such that propagating plane waves with the same frequency and wavenumber exist in the homogeneous media. Optical BICs are of significant current interest, since they have applications in lasing, sensing, filtering, switching, and many light emission processes, but they cannot be excited by incident plane waves when the structure consists of linear materials. In this paper, we study the diffraction of a plane wave by a periodic structure with a second order nonlinearity, assuming the structure has a BIC and the frequency and wavenumber of the incident wave are one half of those of the BIC. Based on a scaling analysis and a perturbation theory, we show that the incident wave may induce a very strong second harmonic wave dominated by the BIC, and also a fourth harmonic wave that cannot be ignored. The perturbation theory reveals that the amplitude of the BIC is inversely proportional to a small parameter depending on the amplitude of the incident wave and the nonlinear coefficient. In addition, a system of four nonlinearly coupled Helmholtz equations (the four-wave model) is proposed to model the nonlinear process. Numerical solutions of the four-wave model are presented for a periodic array of circular cylinders and used to validate the perturbation results.
description: 17 pages, 5 figures
The Carousel Value-added Tax Fraud in the European Emission Trading System
Creators: name: Berrittella, Maria
name: Cimino, Filippo Alessandro
name: Berrittella, Maria
name: Cimino, Filippo Alessandro
Publisher: name: Unknown
Year: 2012
Subjects: subject: Environmental Economics and Policy
subject: Domestic Emission Trading
subject: General Equilibrium Analysis
subject: Legislative Measures
subject: Value-added Tax Fraud
subject: Welfare

description: In this article, we analyse the effects of the carousel value-added tax fraud in the European carbon market and the legislative measures that the EU Member States could adopt to deal with this phenomena. We use a computable general equilibrium model, called GTAP-E and the version 6 of the GTAP database to evaluate the economy-wide and terms of trade effects. The policy test has been designed for five European countries: Belgium, France, Germany, Italy, Netherlands and the United Kingdom. According to our findings, the legislative measures aimed to remove the VAT fraud in the European Emission Trading System will have positive effects in terms of GDP and welfare in the selected EU Member States.
Stochastic Valuation of Hybrid Rice Technology in Arkansas
Creators: name: Lyman, Nathaniel
name: Nalley, Lawton Lanier
name: Lyman, Nathaniel
name: Nalley, Lawton Lanier
Publisher: name: Unknown
Year: 2013
Subjects: subject: Crop Production/Industries
subject: Farm Management
subject: Production Economics
subject: Risk and Uncertainty
subject: rice
subject: hybrid
subject: serf
subject: production economics

description: Despite the rapid producer adoption of hybrid rice (Oryza sativa L.) in recent years, the economic advantage of hybrid rice in the mid-Southern United States remains disputed. This study compares the economic risk and return of three popularly sown hybrid rice varieties: XL723, Clearfield® (CL) XL729, and CL XL745; and eight conventional rice varieties: Cheniere, CL 142-AR, CL 151, Francis, Roy J, Taggart, Templeton, and Wells; using University of Arkansas experimental test plot data from 2006 – 2010. Paddy and milling yield data on each variety are used to estimate a Just-Pope production function, allowing comparison of mean yields and mean yield variances across varieties. A Monte Carlo simulation is used to compare net returns and net return variance (risk) across hybrid and conventional varieties. Just-Pope estimation results indicate that hybrid varieties exhibit mean paddy yield premiums of 1.1 to 1.8 Mg ha-1 relative to the best performing conventional variety (Francis), furthermore the hybrid yield advantage is not associated with increased yield risk. Among hybrid-CL® and conventional-CL®, varieties, hybrid milling quality is not statistically different than conventional varieties. Among non-CL varieties, the hybrid XL723 exhibits a mean head rice yield (HRY) premium relative to conventional alternatives. Monte Carlo simulation results suggest that the net revenue advantage of hybrid-CL and conventional-CL® varieties makes them preferable to and non-CL conventional alternatives, respectively, across the entire range of producer risk preferences considered in this study.
Numerical Modeling of Hydrogen Deflagration Dynamics in Enclosed Space
Creators: name: Skob, Yurii
name: Ugryumov, Mykhaylo
name: Korobchynskyi, Kirill
name: Shentsov, Volodymyr
name: Granovskiy, Eduard
name: Lyfar, Vladimir
Publisher: name: figshare
Year: 2020
Subjects: subject: 91501 Computational Fluid Dynamics
subject: FOS: Other engineering and technologies
subject: 50204 Environmental Impact Assessment
subject: FOS: Earth and related environmental sciences

description: A three-dimensional mathematical model of gaseous hydrogen deflagration in the enclosed space is developed. The process is described by the system of gas dynamics differential equations. Thermodynamic parameters of the mixture and its components are defined as functions of the local temperature and mixture composition. The concentration changes of the fuel and combustion products are determined using conservation laws taking into account rates of component disappearance and formation and turbulent diffusion. It is assumed, that the chemical reaction takes place only in the volume where the fuel concentration is within the limits of inflammability. The mathematical model is validated during an intercomparison test to predict deflagration of a large-scale hydrogen-air mixture in open atmosphere. An algorithm of numerical solution based on the Godunov method is developed. A computer system of engineering analysis of gas-dynamic processes of hydrogen-air mixture formation and combustion in enclosed space with natural ventilation is created. It allows predicting the history of the changes of overpressure, temperature, concentrations of hydrogen and combustion products and other thermogas-dynamic parameters of the mixture in space. This prognosis can be used to estimate dangerous zones of destruction and recommend some safety measures.
Torsion nonminimally coupled to the electromagnetic field and birefringence
Creators: name: Rubilar, Guillermo F.
name: Obukhov, Yuri N.
name: Hehl, Friedrich W.
Publisher: name: arXiv
Year: 2003
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Astrophysics (astro-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In conventional Maxwell--Lorentz electrodynamics, the propagation of light is influenced by the metric, not, however, by the possible presence of a torsion T. Still the light can feel torsion if the latter is coupled nonminimally to the electromagnetic field F by means of a supplementary Lagrangian of the type l^2 T^2 F^2 (l = coupling constant). Recently Preuss suggested a specific nonminimal term of this nature. We evaluate the spacetime relation of Preuss in the background of a general O(3)-symmetric torsion field and prove by specifying the optical metric of spacetime that this can yield birefringence in vacuum. Moreover, we show that the nonminimally coupled homogeneous and isotropic torsion field in a Friedmann cosmos affects the speed of light.
description: Revtex, 12 pages, no figures
Association between Dyslipidemia and Peritoneal Dialysis Technique Survival
Creators: name: Stepanova, Natalia
name: Burdeyna, Olena
Publisher: name: figshare
Year: 2020
Subjects: subject: 110312 Nephrology and Urology
subject: FOS: Clinical medicine

description: BACKGROUND: A large body of research has investigated the effects of pro-atherogenic lipid profile on cardiovascular diseases (CVD) in peritoneal dialysis (PD) patients. However, there is a general lack of research on the association between atherogenic dyslipidemia and PD technique survival.AIM: The study aimed to define the association between dyslipidemia and PD technique survival.METHODS: It was a prospective single-centre observational study involving 40 outpatients on continuous ambulatory PD treatment for more than 3 months between 2010 and 2016 in a single centre in Ukraine. There were 27 males and 13 females. The mean age of the participants was 49.3 ± 12.2 years. The primary outcome measures were all-cause technique failure.RESULTS: Atherogenic dyslipidemia was identified in 28/40 (70 %) patients and correlated with PD adequacy parameters. During the 36-month- follow-up period technique failure occurred in 2/12 (16.6 %) patients with atherogenic dyslipidemia compared with 12 / 28 (42.9 %) patients without atherogenic dyslipidemia (c2 = 2.5; p = 0.12). In the univariate Cox regression model, atherogenic dyslipidemia at baseline was significantly associated with a higher risk of all-cause PD technique failure (HR 4.5; 95% CI 1.6 to 12.9; c2 = 5.5, p = 0.019).CONCLUSION: The presence of atherogenic dyslipidemia was significantly associated with a higher risk of technique failure in PD patients. This is an important issue for future research. Further well-designed clinical trials are needed to determine the impact of dyslipidemia on PD adequacy and technique survival.
Additional file 1 of Transcriptome architecture reveals genetic networks of bolting regulation in spinach
Creators: name: Abolghasemi, Reza
name: Haghighi, Maryam
name: Nematollah Etemadi
name: Shui Wang
name: Aboozar Soorni
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Table S1 Summary of transcriptome sequencing results from 12 spinach samples. Table S2 Summary of STAR alignment rates from 12 spinach samples. KV, KR, VV, and VR represent Kashan-vegetative, Kashan-reproductive, Viroflay-vegetative, and Viroflay-reproductive, respectively. Fig. S1. Distribution of DEGs. (A) The discovered DEGs in the vegetative stages comparison (B) The discovered DEGs in the reproductive stages comparison. The X-axis represents the location of DEGs on chromosomes. Y-axis is the log2 fold change for each. Fig. S2. Distribution of DEGs across six chromosomes. (A) The discovered DEGs from the stages comparison of accession Kashan (B) The discovered DEGs from the stages comparison of accession Viroflay. The X-axis represents the location of DEGs on chromosomes. Y-axis is the log2 fold change for each. Fig. S3. Gene classification of identified DEGs. The histogram shows the classification of DEGs under the molecular function category for all pairwise comparisons. Fig. S4. Gene classification of identified DEGs. The histogram shows the classification of DEGs under the cellular component category for all pairwise comparisons. Fig. S5. Gene expression correlation between RT-qPCR and RNA-seq data (Log2 values of the fold change). The Pearson correlation coefficients and linear regression line are indicated. Fig. S6. The summary statistics of variant effects by the type and region.
Additional file 1: of Polyfunctional anti-human epidermal growth factor receptor 3 (anti-HER3) antibodies induced by HER3 vaccines have multiple mechanisms of antitumor activity against therapy resistant and triple negative breast cancers
Creators: name: Osada, Takuya
name: Hartman, Zachary
name: Wei, Junping
name: Lei, Gangjun
name: Hobeika, Amy
name: Gwin, William
name: Diniz, Marcio
name: Spector, Neil
name: Clay, Timothy
name: Chen, Wei
name: Morse, Michael
name: Lyerly, H.
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Figure S1. Flow cytometric detection of HER3 on human breast cancer cell lines with anti-HER3 monoclonal antibodies (mAb) and HER3-VIA. To detect HER3-specific antibodies that could recognize membrane-associated HER3, binding of HER3-VIA in mouse serum was tested by flow cytometry against a series of human HER3-expressing breast tumor cell lines as targets, including the high HER3-expressing BT474, BT474M1, SKBR3, and T47D, and the HER3 negative, triple negative MDA-MB-231 tumor cell lines. Upper histograms: cells were stained with commercially available PE-conjugated anti-HER3 mAb (filled histogram), or PE-conjugate isotype control IgG as a negative staining (open histogram). Lower histograms: cells were incubated with HER3-VIA or GFP-VIA (1:100 dilution in medium), followed by staining with PE-conjugated anti-mouse IgG mAb. Filled histogram, HER3-VIA; open histogram, GFP-VIA. Percentage of staining positive cells and median fluorescence intensity are shown in each histogram. (PDF 119 kb)
Fresh Vegetable Growers' Risk Perception, Risk Preference and Choice of Marketing Contracts: A Choice Experiment
Creators: name: Vassalos, Michael
name: Hu, Wuyang
name: Woods, Timothy A.
name: Schieffer, Jack
name: Dillon, Carl R.
name: Vassalos, Michael
name: Hu, Wuyang
name: Woods, Timothy A.
name: Schieffer, Jack
name: Dillon, Carl R.
Publisher: name: Unknown
Year: 2013
Subjects: subject: Agribusiness
subject: Farm Management
subject: Marketing
subject: FOS: Economics and business
subject: Marketing Contracts
subject: transaction costs
subject: choice of contracts
subject: choice experiment

description: Growers’ preferences for a number of marketing contract attributes as well as the effect of growers’ risk perception and risk preferences on the choice of marketing contracts were examined with the use of a choice experiment. The main data source for the study is a mail survey administrated to 315 wholesale tomato growers. The findings validate the transaction cost hypothesis and indicate heterogeneity in preferences. Risk perception and risk preferences had limited impact on contract choice.
Drought Tolerance of Soybean Crops in Missouri
Creators: name: Parcell, Joseph L.
name: Cain, Jewelwayne S.
name: Parcell, Joseph L.
name: Cain, Jewelwayne S.
Publisher: name: Unknown
Year: 2013
Subjects: subject: Crop Production/Industries
subject: Environmental Economics and Policy
subject: Production Economics
subject: Research Methods/ Statistical Methods
subject: soybeans
subject: drought tolerance
subject: Missouri

description: Constant research efforts have been undertaken to create and adopt soybean varieties and farming practices that would lead to more drought-tolerant crops. Given that drought-tolerant crops are more stable in terms of price and supply, private genetic companies invest in those genetic materials with the biggest market opportunities. This begs the question: has there been any indication of improvements in drought-tolerance of crops? In this study, we focus on analyzing three soybean distinct relative maturity zones in the state of Missouri and determine if and in what direction is the drought tolerance of these crops changing over time.
Does the spacelike character of the Minkowski four-momentum show up in analog gravity?
Creators: name: Brevik, Iver
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: In analog gravity the recent experiment of Drori {\it et al.} [Phys. Rev. Lett. {\bf 122}, 010404 (2019)] is impressive, as it shows how the emission of two Hawking quanta emitted in opposite directions lead to measurable consequences in the medium's rest system in a straightforward way. This result raises however the following problem: how can this experiment be explained in terms of classical electrodynamics? There must necessarily exist such an explanation (the experiment is after all classical); otherwise classical electrodynamics would be an incomplete theory. This is the main topic of the present paper. We propose that the measured effect is a demonstration of the spacelike character of the Minkowski four-momentum. Moreover, we extend the discussion by analyzing a Gedanken experiment (making use of the Kerr effect as a formal agency), to illustrate the transition from subluminal to superluminal phenomena in a straightforward way. Finally, we emphasize the close relationship that exists between the spacelike Minkowski momentum and the anomalous Doppler effect.
description: 12 pages, no figures
Pump induced Autler-Townes effect and A-T mixing in a four level atoms
Creators: name: Bhattacharyya, Dipankar
name: Ray, Biswajit
name: Ghosh, Pradip N.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Atomic Physics (physics.atom-ph)
subject: FOS: Physical sciences

description: It is shown by theoretical simulation that tuning of the pump power can induce mixing and crossing of Autler-Townes(A-T)components of closely spaced transitions in atoms. Pump radiation also leads to small shifts of the central hole of A-T doublet. Off-resonance pumping gives an asymmetry in the A-T components and by controlling pump frequency detuning it is also possible to mix the A-T components.
description: 10 Pages, 3 figure
Additional file 2 of Analysis of temporal gene regulation of Listeria monocytogenes revealed distinct regulatory response modes after exposure to high pressure processing
Creators: name: Nikparvar, Bahareh
name: Andreevskaya, Margarita
name: Ilhan C. Duru
name: Bucur, Florentina I.
name: Grigore-Gurgu, Leontina
name: Borda, Daniela
name: Nicolau, Anca I.
name: Riedel, Christian U.
name: Auvinen, Petri
name: Bar, Nadav
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2 Figure S1 (.pdf format): TF activity (TFA) ratio. Error bars show the mean and standard deviation of TFA at each time point over 100 simulations. To make early time points distinguishable, the x-axis represents sample points for 9 time points (1-9) corresponding to 0, 5, 10, 30, 45, 60 min and 6, 24, 48 h, respectively.
Classification of N=2 supersymmetric CFT_{4}s: Indefinite Series
Creators: name: Haddou, M. Ait Ben
name: Belhaj, A.
name: Saidi, E. H.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Using geometric engineering method of 4D $\mathcal{N}=2$ quiver gauge theories and results on the classification of Kac-Moody (KM) algebras, we show on explicit examples that there exist three sectors of $\mathcal{N}=2$ infrared CFT$_{4}$s. Since the geometric engineering of these CFT$_{4}$s involve type II strings on K3 fibered CY3 singularities, we conjecture the existence of three kinds of singular complex surfaces containing, in addition to the two standard classes, a third indefinite set. To illustrate this hypothesis, we give explicit examples of K3 surfaces with H$_{3}^{4}$ and E$_{10}$ hyperbolic singularities. We also derive a hierarchy of indefinite complex algebraic geometries based on affine $A_{r}$ and T$%_{(p,q,r)}$ algebras going beyond the hyperbolic subset. Such hierarchical surfaces have a remarkable signature that is manifested by the presence of poles.
description: 12 pages, 2 figures
Additional file 1 of Integrated analysis of ultra-deep proteomes in cortex, cerebrospinal fluid and serum reveals a mitochondrial signature in Alzheimer’s disease
Creators: name: Wang, Hong
name: Dey, Kaushik Kumar
name: Chen, Ping-Chung
name: Li, Yuxin
name: Niu, Mingming
name: Cho, Ji-Hoon
name: Wang, Xusheng
name: Bai, Bing
name: Jiao, Yun
name: Chepyala, Surendhar Reddy
name: Haroutunian, Vahram
name: Zhang, Bin
name: Beach, Thomas G.
name: Peng, Junmin
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Supplementary Figure S1. DE mitochondrial proteins are tightly correlated with each other in human CSF. S2. Ultra-deep profiling depth is a prerequisite to detect evident mitochondrial signatures presented in AD CSF. S3. PPI module proteins are highly correlated with each other. S4. Mitochondrial proteins that have decreased expression levels in the examined biofluids in both human and mouse AD.
Hydrophis jerdonii
Creators: name: Figueroa, Alex
name: Low, Martyn E. Y.
name: Lim, Kelvin K. P.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Reptilia
Squamata
Elapidae
Hydrophis
Hydrophis jerdonii

description: Hydrophis jerdonii (Gray, 1849) — Erroneous.
Jerdon’s Sea Snake
Singapore records.
Hydrophis jerdonii —Sworder, 1923: 68.
Kerilia jerdoni —K.K.P. Lim & L.M. Chou, 1990: 54.—K.K.P. Lim & F.L.K. Lim, 1992: 148.—L.M. Chou et al., 1994: 105.—K.P. Lim & F.L.K. Lim, 2002: 148.
Kerilia jerdonii siamensis — Iskandar & Colijn, 2001: 138.
Kerilia jerdonii — Das, 2010: 323.—Rasmussen et al., 2011: 8.—Wallach et al., 20114: 353.
Kerilia jerdoni —Chan-ard et al., 2015: 267.
Hydrophis (Kerilia) jerdonii — Leviton et al., 2018: 463.
Remarks. Sworder (1923) presumed the occurrence of H. jerdonii in Singapore because of its presence in Penang, Peninsular Malaysia. No other reports of H. jerdonii from Singapore have been published. Three specimens from Singapore are deposited in museum collections; two at ZMUC and one at SAMA. When further inspecting these specimens, the two at ZMUC have the location as “NE of Singapore ”. In fact, these specimens have GPS coordinates that place them off the coast of Sedili Kechil, Peninsular Malaysia. Specimen SAMA R22569 is actually A. eydouxii (Sanders et al. 2012).
LKCNHM & NHMUK Museum specimens. No specimens.
Additional Singapore museum specimens. Singapore (no locality): ZMUC.
description: Published as part of Figueroa, Alex, Low, Martyn E. Y. & Lim, Kelvin K. P., 2023, Singapore's herpetofauna: updated and annotated checklist, history, conservation, and distribution, pp. 1-378 in Zootaxa 5287 (1) on page 275, DOI: 10.11646/zootaxa.5287.1.1, http://zenodo.org/record/7960319
Bifurcation and stability of downflowing gyrotactic micro-organism suspensions in a vertical pipe
Creators: name: Fung, Lloyd
name: Bearon, Rachel N.
name: Hwang, Yongyun
Publisher: name: arXiv
Year: 2020
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: In the experiment that first demonstrated gyrotactic behaviour of bottom-heavy swimming microalgae (e.g. Chlamydomonas), Kessler (Nature, vol. 313, 1985, pp. 218-220) showed that a beam-like structure, often referred to as a gyrotactic plume, would spontaneously appear from a suspension of gyrotactic swimmers in a downflowing pipe. Such a plume is prone to an instability to form blips. This work models the gyrotactic plume as a steady parallel basic state and its subsequent breakdown into blips as an instability, employing both the Generalised Taylor Dispersion (GTD) theory and the Fokker-Planck model for comparison. Upon solving for the basic state, it is discovered that the steady plume solution undergoes sophisticated bifurcations. When there is no net flow, there exists a non-trivial solution of the plume structure other than the stationary uniform suspension, stemming from a transcritical bifurcation with the average cell concentration. When a net downflow is prescribed, there exists a cusp bifurcation. Furthermore, there is a critical concentration, at which the cell concentration at the centre would blow up for the GTD model. The subsequent stability analysis using the steady plume solution shows that the Fokker-Planck model is inconsistent with what was experimentally observed, as it predicts stabilisation of axisymmetric blips at high concentration of the plume and destabilisation of the first non-axisymmetric mode at low flow rates.
Syzygiella setulosa Stephani 1902
Creators: name: Váňa, Jiří
name: Feldberg, Kathrin
name: Söderström, Jochen Heinrichs Lars
name: Hagborg, Anders
name: Konrat, Matt Von
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Plantae
Marchantiophyta
Jungermanniopsida
Jungermanniales
Adelanthaceae
Syzygiella
Syzygiella setulosa

description: Syzygiella setulosa
 Syzygiella setulosa Stephani (1902a: 469) is a very common species, especially in the Bolivian Andes. The species is morphologically quite variable and includes several morphological extremes. Already Stephani (1916) described four binomials from Bolivia which are considered to be synonyms of Syzygiella setulosa, i.e. Jamesoniella rotundifolia Stephani (1916: 185), Plagiochila connatistipula Stephani (1916: 194), Plagiochila hariotii Stephani (1916: 200) and Plagiochila purpurea Stephani (1916: 208) (Inoue 1966). According to our revision, Syzygiella inouei Grolle (1968: 354) represents an extreme, intensively reddish modification of Syzygiella setulosa with large papillae on the cell surface. Morphologically similar populations are known from high altitudes of Bolivia, Peru and Ecuador. Intense red color as well as dense and sometimes high papillae on the cell surface correspond with extreme ecological conditions (water, light) above the timberline. These populations resemble Syzygiella rubricaulis (Nees 1833: 344) Stephani (1902a: 468) but differ in oppositely inserted, dorsally connate, orbiculate leaves.
description: Published as part of Váňa, Jiří, Feldberg, Kathrin, Söderström, Jochen Heinrichs Lars, Hagborg, Anders & Konrat, Matt Von, 2014, Notes on Early Land Plants Today. 55. New taxa and synonyms in Adelanthaceae (Marchantiophyta), pp. 80-86 in Phytotaxa 173 (1) on page 82, DOI: 10.11646/phytotaxa.173.1.7, http://zenodo.org/record/5149770
MOESM1 of Tat inhibition by didehydro-Cortistatin A promotes heterochromatin formation at the HIV-1 long terminal repeat
Creators: name: Li, Chuan
name: Mousseau, Guillaume
name: Valente, Susana
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: Chemical Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Additional file 1: Table 1. Â Sequences of primers used.
Additional file 3: of Prospective randomized controlled trial to compare laparoscopic distal gastrectomy (D2 lymphadenectomy plus complete mesogastrium excision, D2â +â CME) with conventional D2 lymphadenectomy for locally advanced gastric adenocarcinoma: study protocol for a randomized controlled trial
Creators: name: Shen, Jie
name: Cao, Beibei
name: Wang, Yatao
name: Xiao, Aitang
name: Qin, Jichao
name: Wu, Jianhong
name: Yan, Qun
name: Hu, Yuanlong
name: Yang, Chuanyong
name: Cao, Zhixin
name: Hu, Junbo
name: Yin, Ping
name: Xie, Daxing
name: Gong, Jianping
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology

description: Instance of the scoring criterion for mesenteric excision in D2â +â CME procedure. Mesenteric scoring including four parameters: trijunction point exposure, mesogastrium body, smooth plane of surgical bed after mesenteric resection, and the high tie ligation of vessels. Each parameter is scored as 2 (good), 1 (moderate), or 0 (poor). The parametric scores are summed to get the mesenteric score, then the mesenteric scores of all the dissected mesogastria are summed to get the total score. (PDF 179 kb)
Cardy states as idempotents of fusion ring in string field theory
Creators: name: Kishimoto, Isao
name: Matsuo, Yutaka
Publisher: name: arXiv
Year: 2004
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: With some assumptions, the algebra between Ishibashi states in string field theory can be reduced to a commutative ring. From this viewpoint, Cardy states can be identified with its idempotents. The algebra can be identified with a fusion ring for the rational conformal field theory and a group ring for the orbifold. This observation supports our previous observation that boundary states satisfy a universal idempotency relation under closed string star product.
description: 8 pages
Additional file 1 of Human alpha-synuclein overexpressing MBP29 mice mimic functional and structural hallmarks of the cerebellar subtype of multiple system atrophy
Creators: name: Mészáros, Lisa
name: Riemenschneider, Markus J.
name: Gassner, Heiko
name: Marxreiter, Franz
name: Von Hörsten, Stephan
name: Hoffmann, Alana
name: Winkler, Jürgen
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Physiology
subject: Pharmacology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Developmental Biology
subject: Computational Biology

description: Additional file 1: Figure S1: Absence of GCI pathology in the cerebellar cortex of MSA-C patients. a: Graphical overview illustrating regions of interest within the human cerebellum including the granular cell layer (GCL) and molecular layer (ML). b, c: Co-staining of OLIG2 (brown) and α-syn (red) within the ML (b) and GCL (c). Nuclei were counterstained using haematoxylin (blue). Inserts show OLIG2+ oligodendrocytes. Scale bar: 20 µm. Figure S2: Expression of human alpha-synuclein (α-syn) predominantly within the cerebellar white matter of MBP29-hα-syn (MBP29) mice. a: Immunofluorescence staining for OLIG2 (magenta) as oligodendrocyte-specific marker and α-syn (green) within the cerebellar white matter (cbw) and cerebellar cortex (cbx) of 8- and 16-week-old MBP29-hα-syn mice compared to ntg mice; scale bar: 50 µm. b: Co-staining of phosphorylated α-syn (pS129-α-syn; magenta) and α-syn (green) within the cbw and cbx of 8- and 16-week-old MBP29-hα-syn mice compared to ntg mice; scale bar: 10 µm. c: Cellular expression of TPPP/p25α (magenta) and α-syn (green) within cbw and cbx of 8- and 16-week-old MBP29-hα-syn mice compared to ntg mice; scale bar: 10 µm. All images are shown as maximum intensity projection images; DAPI+ nuclei are shown in blue. Table S1: Changes of gait parameters and bodyweight in MBP29-hα-syn mice (MBP29) vs. non-transgenic controls (ntg). Table S2: Subgroup gait analysis in MBP29-hα-syn (MBP29) mice (completed) compared to MBP29-hα-syn mice (non-completed).
UMA ANALISE ECONOMETRICA DAS OFERTAS DE ACUCAR E ALCOOL PARANAENSES
Creators: name: Alves, Lucilio Rogerio Aparecido
name: Shikida, Pery Francisco Assis
name: Souza, Elvanio Costa De
name: Carvalheiro, Elizangela Mara
name: Alves, Lucilio Rogerio Aparecido
name: Shikida, Pery Francisco Assis
name: Souza, Elvanio Costa De
name: Carvalheiro, Elizangela Mara
Publisher: name: Unknown
Year: 2006
Subjects: subject: Crop Production/Industries
subject: International Development
subject: cana-de-acucar
subject: Parana
subject: modelagem econometrica
subject: sugar-cane
subject: Parana State
subject: econometric model.

description: Este trabalho analisa as ofertas de açúcar e de álcool paranaenses, a partir de uma modelagem econométrica. Como corolário, a quantidade ofertada de açúcar varia inversamente ao preço do álcool, assim como a quantidade ofertada de álcool varia inversamente ao preço do açúcar, mas este último foi não significativo estatisticamente. Outrossim, considerando apenas os resultados significativos, uma variação de 1% no preço médio do açúcar gera uma variação positiva de 1,2% na quantidade ofertada deste produto, e se o preço médio do álcool se eleva em 1% a quantidade ofertada de açúcar sofre uma queda de 2,0%. Um aumento de 1% no preço médio da cana-de-açúcar gera um acréscimo menos que proporcional na oferta do açúcar (0,79%). Diante de tais resultados, pode-se dizer que o dinamismo da agroindústria canavieira do Paraná tem sido dado, mormente, pela oferta de açúcar, sendo a oferta de álcool mais residual (comparativamente à produção de açúcar). ------------------------ This article analyses the sugar and alcohol supplies in Paraná State, using an econometric model. As result, the supplied amount of sugar varies inversely to the price of the alcohol, as well as the supplied amount of alcohol varies inversely to the price of the sugar, but this last one was not statistically significant. Therefore, just considering the significant results, a variation of 1% in the medium price of the sugar generates a positive variation of 1,2% in the supplied amount of this product, and if the medium price of the alcohol rises in 1% the supplied amount of sugar decreases 2,0%. An increase of 1% in the medium price of the sugar-cane generates an increment in the supply of the sugar of 0,79% (less than proportional). With these results, it is possible to conclude that the dynamism of the sugar2 cane industry in Paraná State is due, mainly, to the sugar supply, being the alcohol supply more residual (comparatively to the production of sugar).
Modeling Kepler Eclipsing Binaries: Homogeneous Inference of Orbital & Stellar Properties
Creators: name: Windemuth, Diana
name: Agol, Eric
name: Ali, Aleezah
name: Kiefer, Flavien
Publisher: name: arXiv
Year: 2019
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: We report on the properties of eclipsing binaries from the Kepler mission with a newly developed photometric modeling code, which uses the light curve, spectral energy distribution of each binary, and stellar evolution models to infer stellar masses without the need for radial velocity measurements. We present solutions and posteriors to orbital and stellar parameters for 728 systems, forming the largest homogeneous catalogue of full Kepler binary parameter estimates to date. Using comparisons to published radial velocity measurements, we demonstrate that the inferred properties (e.g., masses) are reliable for well-detached main-sequence binaries, which make up the majority of our sample. The fidelity of our inferred parameters degrades for a subset of systems not well described by input isochrones, such as short-period binaries that have undergone interactions, or binaries with post-main sequence components. Additionally, we identify 35 new systems which show evidence of eclipse timing variations, perhaps from apsidal motion due to binary tides or tertiary companions. We plan to subsequently use these models to search for and constrain the presence of circumbinary planets in Kepler eclipsing binary systems.
description: 36 pages, 16 figures; accepted 2019 July 30 to MNRAS
Dyslipidemia and Intraperitoneal Inflammation Axis in Peritoneal Dialysis Patients: A Cross-Sectional Pilot Study
Creators: name: Stepanova, Natalia
name: Driianska, Victoria
name: Savchenko, Svitlana
Publisher: name: figshare
Year: 2020
Subjects: subject: 110312 Nephrology and Urology
subject: FOS: Clinical medicine

description: Background: We have hypothesized that the problem of dyslipidemia in peritoneal dialysis (PD) patients lies beyond certain levels of plasma lipoprotein and involves cardiovascular risk, but can also influence the development of chronic intraperitoneal inflammation. Objectives: The aim of our work was to define whether the association of dyslipidemia with intraperitoneal inflammation really exists and if it could it be used in a prospective cohort of PD patients. Patients and Methods: We performed a cross-sectional, single-center, pilot study involving 40 nondiabetic PD patients (27 men and 13 women with an average age of 49.3 ± 12.2 years). The median time on PD was 29 (18.5–37) months. The parameters dialysis adequacy, blood lipid profile, and the concentrations of tumor necrosis factor (TNF)-α, monocyte chemoattractant protein (MCP)-1, and interleukin (IL)-10 in peritoneal dialysate effluent (PDE) were determined. Cohen’s d effect size was computed post hoc to determine the differences between groups in the concentrations of pro- and anti-inflammatory mediators. Results: PD patients with atherogenic dyslipidemia had significantly high levels of MCP-1 compared with dyslipidemia-free patients (Cohen’s d = 1.32). A reduced high-density lipoprotein cholesterol level was associated with a high intraperitoneal production of the proinflammatory mediator TNF-α (p < 0.0001) and anti-inflammatory IL-10 (p < 0.0001). Atherogenic index of plasma was directly correlated with MCP-1 (p < 0.0001) and TNF-α (p < 0.0001). In multiple regression analysis, MCP-1 appeared to predict PD inadequacy (R2 = 0.58; F ratio = 9.4; p = 0.006) independently of age and blood C-reactive protein level. Effect size was 1.38 with α = 0.05, n = 40, and 3 predictors. Conclusions: Our cross-sectional pilot study first demonstrated a close interaction between the atherogenic lipid profile and a high concentration of MCP-1 in PDE; this might be a prognostic marker for PD inadequacy. The potential significance of our finding is that it provides useful preliminary information necessary for further research into this area.
Hydrophis klossi Boulenger 1912
Creators: name: Figueroa, Alex
name: Low, Martyn E. Y.
name: Lim, Kelvin K. P.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Reptilia
Squamata
Elapidae
Hydrophis
Hydrophis klossi

description: Hydrophis klossi Boulenger, 1912 — Erroneous.
Kloss’ Sea Snake
Singapore records.
Hydrophis klossi —Sworder, 1923: 69.—K.K.P. Lim & L.M. Chou, 1990: 54.—K.K.P. Lim & F.L.K. Lim, 1992: 148.—L.M. Chou et al., 1994: 105.— Iskandar & Colijn, 2001: 134.—K.P. Lim & F.L.K. Lim, 2002: 148.— Das, 2010: 320.—Chan-ard et al., 2015: 272.
Mediohydrophis klossi —Wallach et al., 2014: 430.
Hydrophis (Mediohydrophis) klossi — Leviton et al., 2018: 463.
Remarks. Sworder (1923) suspected the presence of H. klossi in Singapore because it occupies the Straits of Malacca, but no records exist of this species from Singapore. Subsequent publications likely refer to Sworder (1923). Voris and Jeffries collected two specimens during their sea snake research in Singapore, but the two specimens were brought to the Kangkar Fish Market with no specific locality recorded and have been excluded (refer to “A note on sea snakes in Singapore ” above), and the LKCNHM has specimens from the South China Sea.
LKCNHM & NHMUK Museum specimens. No specimens.
Additional Singapore museum specimens. No specimens.
description: Published as part of Figueroa, Alex, Low, Martyn E. Y. & Lim, Kelvin K. P., 2023, Singapore's herpetofauna: updated and annotated checklist, history, conservation, and distribution, pp. 1-378 in Zootaxa 5287 (1) on page 276, DOI: 10.11646/zootaxa.5287.1.1, http://zenodo.org/record/7960319
Additional file 2: of Polyfunctional anti-human epidermal growth factor receptor 3 (anti-HER3) antibodies induced by HER3 vaccines have multiple mechanisms of antitumor activity against therapy resistant and triple negative breast cancers
Creators: name: Osada, Takuya
name: Hartman, Zachary
name: Wei, Junping
name: Lei, Gangjun
name: Hobeika, Amy
name: Gwin, William
name: Diniz, Marcio
name: Spector, Neil
name: Clay, Timothy
name: Chen, Wei
name: Morse, Michael
name: Lyerly, H.
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Table S1. Epitope mapping of HER3-VIA using spotted 15-mer peptide arrays. Epitope mapping was performed using spotted peptide arrays of 15-mer peptides overlapping by four amino acids representing the full length of the human HER3 protein. HER3 peptides were coated onto cellulose membranes using a Spot Robot ASP 222 (AbiMed) and epitope mapping of HER3-VIA (1:100 dilution in saline) was performed as described [26]. (PDF 36 kb)
Ultracompact H II Regions with Extended Emission: The Complete View
Creators: name: de la Fuente, Eduardo
name: Porras, Alicia
name: Trinidad, Miguel A.
name: Kurtz, Stanley E.
name: Kemp, Simon N.
name: Tafoya, Daniel
name: Franco, José
name: Rodríguez-Rico, Carlos
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: In this paper we present the results of a morphological study performed on a sample of 28 ultracompact \hiirs~located near extended free-free emission, using radio continuum observations at 3.6~cm with the C and D VLA~configurations, with the aim of determining a direct connection between them. By using previously published observations in B and D VLA~configurations, we compiled a final catalogue of 21 ultracompact \hiirs ~directly connected with the surrounding extended emission. The observed morphology of most of the ultracompact \hiirs~in radio continuum emission is irregular (single or multi-peaked sources) and resembles a classical bubble structure in the Galactic plane with well-defined cometary arcs. Radio continuum images superimposed on colour composite \textit{Spitzer} images reinforce the assignations of direct connection by the spatial coincidence between the ultracompact components and regions of saturated 24~\micron~emission. We also find that the presence of extended emission may be crucial to understand the observed infrared-excess because an underestimation of ionizing Lyman photons was considered in previous works.
description: 21 pages, 4 figures, to be Published on Monthly Notices of the Royal Astronomical Society (Accepted: December, 18, 2019)
Oxidative stress in peritoneal dialysis patients: Association with the dialysis adequacy and technique survival
Creators: name: Stepanova, Natalia
name: Korol, Lesya
name: Burdeyna, Olena
Publisher: name: figshare
Year: 2020
Subjects: subject: 110312 Nephrology and Urology
subject: FOS: Clinical medicine

description: Introduction: Increased oxidative stress is suggested as one of the possible mechanisms of structural and functional damage to the peritoneal membrane in peritoneal dialysis patients. But there are few available data on the association of oxidative stress with peritoneal dialysis adequacy and technique survival. The present study was undertaken to investigate the association of oxidative stress biomarkers with the peritoneal dialysis adequacy and technique survival. Methods: This prospective single-center observational study was conducted between January 2010 and May 2015. Adequacy of dialysis, malondialdehyde levels in the serum and erythrocytes (as an indicator of lipid peroxidation), the concentration of ceruloplasmin, transferrin, and sulfhydryl groups in the blood, and total peroxidase activity in erythrocyte (as indicators of antioxidant system) were determined in 44 stable ambulatory non-diabetic peritoneal dialysis patients. Results: The follow-up period was 3 years. We identified a negative correlation between the serum level of malondialdehyde in the patients and total weekly Kt/V. Peritoneal weekly CrCl was positively correlated with the levels of transferrin, total peroxidase activity, and SH– groups. Daily peritoneal ultrafiltration had a positive correlation with the total peroxidase activity and the serum transferrin levels. The results of the Kaplan–Meier analysis and the log-rank test also demonstrated a significant difference in the cumulative technique survival rate between the patients with ceruloplasmin level ≤0.19 g/l and ≥0.2 g/l. Conclusions: The results mentioned above could be considered as one of the ways to explain better technique survival in PD patients.