cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 2: of Deep proteomic network analysis of Alzheimer’s disease brain reveals alterations in RNA binding proteins and RNA splicing associated with disease
Creators: name: Johnson, Erik
name: Dammer, Eric
name: Duong, Duc
name: Luming Yin
name: Thambisetty, Madhav
name: Troncoso, Juan
name: Lah, James
name: Levey, Allan
name: Seyfried, Nicholas
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Neuroscience
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 60506 Virology
subject: FOS: Biological sciences

description: Table S2. Case Characteristics. Values shown are means ± SD. AD, Alzheimer’s disease; AsymAD, asymptomatic Alzheimer’s disease; MCI, mild cognitive impairment; CERAD, Consortium to Establish a Registry for Alzheimer’s Disease amyloid-β plaque load score; Braak, Braak stage for tau tangle burden; PMI, post-mortem interval; ApoE, apolipoprotein E isoform genotype. (DOCX 30 kb)
Evolution of the accretion flow in Nova Muscae 1991
Creators: name: Zycki, Piotr
name: Done, Chris
name: Smith, David
Publisher: name: arXiv
Year: 1998
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We identify the X-Ray reflected component in the Ginga spectra of Nova Muscae 1991, a Black Hole transient system used as the prototype for the recent model of Esin, McClintock & Narayan (1997) based on advection dominated disk solutions. We see that the reflected spectrum is generally significantly relativistically smeared, and use this, together with the amplitude of reflection, to track the innermost extent of the accretion disk. The optically thick disk switches from being highly ionized to nearly neutral during the transition from high to low state, and the inner radius of the disk moves outwards during the low state decline. Qualitatively, this overall trend is compatible with Esin et al.'s model, but quantitatively, the retreat of the inner disk during the high to low state transition is much slower than predicted. The hard (low state) spectra are not produced solely by an optically thin accretion flow: optically thick material within 20-100 Rg is generally present.
description: 11 pages including one table and two figures, uses aaspp4. Accepted by ApJ Letters
title: ADCO, Grènetier de Cîteaux : comptes (1497-1504) (11 H 1172), f. 00574
Creators: name: de la Côte-d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2019
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: comptes
subject: Corpus Burgundiae Medii Aevi

description: Grènetier de Cîteaux : comptes (1497-1504), Archives départementales de la Côte-d'Or, (11 H 1172). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Grènetier de Cîteaux : comptes (1497-1504), Archives départementales de la Côte-d'Or, (11 H 1172), f. 00574, in Projet CBMA - Corpus Burgundiae Medii Aevi \[Ressource en ligne\], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Low-energy excitations and non-BCS superconductivity in Nb$_x$-Bi$_2$Se$_3$
Creators: name: Sirohi, Anshu
name: Das, Shekhar
name: Neha, Prakriti
name: Jat, Karn S.
name: Patnaik, Satyabrata
name: Sheet, Goutam
Publisher: name: arXiv
Year: 2018
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: When certain elemental metals like Cu, Sr and Nb are intercalated between the layers of Bi$_2$Se$_3$, a topological insulator, the intercalated systems superconduct with critical temperatures around 3 K. Naturally, in all these cases, the possibility of topological superconductivity was suggested and explored. However, in cases of Cu and Sr intercalated systems, the low-temperature scanning tunneling microscopy (STM) experiments revealed fully formed gaps where no signature of low-energy states, a requisite for topological superconductivity, was found. Here, through STM spectroscopy down to 400 mK we show that in Nb$_x$-Bi$_2$Se$_3$ ($x$ = 0.25), the spectra deviate from a BCS-like behavior and the spectral weight at low-bias is large. Our observations are consistent with the idea that the order parameter of Nb$_x$-Bi$_2$Se$_3$ is nodal. Therefore, our results conclude that compared to other members of the family, Nb$_x$-Bi$_2$Se$_3$ has a stronger possibility of being a topological superconductor.
description: 5 pages, 4 figures
The Non-Abelian Born-Infeld Action and Noncommutative gauge theory
Creators: name: Terashima, Seiji
Publisher: name: arXiv
Year: 2000
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In this paper we explicitly show the equivalence between the non-Abelian Born-Infeld action, which was proposed by Tseytlin as an effective action on several D-branes, and its noncommutative counterpart for slowly varying fields. This confirms the equivalence between the two descriptions of the D-branes using an ordinary gauge theory with a constant B field background and a noncommutative gauge theory, claimed by Seiberg and Witten. We also construct the general forms of the 2 n-derivative terms for non-Abelian gauge fields which are consistent with the equivalence in the approximation of neglecting (2 n+2)-derivative terms.
description: 18 pages, LaTeX, no figures. minor corrections, version to appear in JHEP
Incorporation of charge- and pair-density-wave states into the one-band model of d-wave superconductivity
Creators: name: Zegrodnik, M.
name: Spałek, J.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We study the coexistence of pair- (PDW) and charge-density-wave (CDW) states within the single-band $t$-$J$-$U$ and Hubbard models of $d$-$wave$ superconductivity and discuss our results in the context of the experimental observations for the copper-based compounds. In order to take into account the correlation effects with a proper precision, we use the approach based on the diagrammatic expansion of the Gutzwiller wave function (DE-GWF), that goes beyond the renormalized mean field theory (RMFT) in a systematic manner. According to our analysis of the $t$-$J$-$U$ model, the transition between the pure $d$-$wave$ superconducting phase (SC) and the coexistent CDW+PDW phase takes place at $δ\approx 0.18$ (close to the optimal doping), with the modulated phase located in the underdoped regime. The situation is slightly different for the case of the Hubbard model, where a narrow stability regime of a precursor nematic phase sets in preceding the formation of the modulated CDW+PDW state, with the decreasing hole doping. The results complete our discussion of the standard phase diagram for high-T$_C$ superconducting compounds within the DE-GWF variational approach in the single narrow-band case.
Update of membership and mean proper motion of open clusters from UCAC5 catalog
Creators: name: Dias, W. S.
name: Monteiro, H.
name: Assafin, M.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We present mean proper motions and membership probabilities of individual stars for optically visible open clusters, which have been determined using data from the UCAC5 catalog. This follows our previous studies with the UCAC2 and UCAC4 catalogs, but now using improved proper motions in the GAIA reference frame. In the present study results were obtained for a sample of 1108 open clusters. For five clusters, this is the first determination of mean proper motion, and for the whole sample, we present results with a much larger number of identified astrometric member stars than on previous studies. It is the last update of our Open cluster Catalog based on proper motion data only. Future updates will count on astrometric, photometric and spectroscopic GAIA data as input for analyses.
description: 7 pages, 3 figures, 2 tables, 4 equations; accepted for publication in 2018 May 25 in the MNRAS
Poor-man's model of hollow-core anti-resonant fibers
Creators: name: Bache, Morten
name: Habib, Md. Selim
name: Markos, Christos
name: Lægsgaard, Jesper
Publisher: name: arXiv
Year: 2018
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We investigate various methods for extending the simple analytical capillary model to describe the dispersion and loss of anti-resonant hollow-core fibers without the need of detailed finite-element simulations across the desired wavelength range. This poor-man's model can with a single fitting parameter quite accurately mimic dispersion and loss resonances and anti-resonances from full finite-element simulations. Due to the analytical basis of the model it is easy to explore variations in core size and cladding wall thickness, and should therefore provide a valuable tool for numerical simulations of the ultrafast nonlinear dynamics of gas-filled hollow-core fibers.
description: In preparation
Trapped Modes of the Helmholtz Equation
Creators: name: Sargent, Cristina Vasilica
Publisher: name: Imperial College London
Year: 2013

description: In the framework of the classical theory of linearised water waves in unbounded domains, trapped modes consist of non-propagating, localised oscillation modes of finite energy occurring at some well-defined frequency and which, in the absence of dissipation, persist in time even in the absence of external forcing. Jones (1953) proved the existence of trapped modes for problems governed by the Helmholtz equation in semi-infinite domains. Trapped modes have been studied in quantum mechanics, elasticity and acoustics and are known, depending on the context, as bound states, acoustic resonances, Rayleigh-Bloch waves, sloshing modes and motion trapped modes. We consider trapped modes in two dimensional infinite waveguides with either Neumann or Dirichlet boundary conditions. Such problems arise when considering obstacles in acoustic waveguides or bound states in quantum wires for example. The mathematical model is a boundary value problem for the Helmholtz equation. Under the usual assumptions of potential theory, the solution is written in terms of a boundary integral equation. We develop a Boundary Element Method (BEM) program which we use to obtain approximate numerical solutions. We extend existing results by identifying additional trapped modes for geometries already studied and investigate new structures. We also carry out a detailed investigation of trapped modes, using the planewave spectrum representation developed for various characteristic problems from the classical theories of radiation, diffraction and propagation. We use simple planewaves travelling in diverse directions to build a more elaborate solution, which satisfies certain conditions required for a trapped mode. Our approach is fairly flexible so that the general procedure is independent of the shape of the trapping obstacle and could be adapted to other geometries. We apply this method to the case of a disc on the centreline of an infinite Dirichlet acoustic waveguide and obtain a simple mathematical approximation of a trapped mode, which satisfies a set of criteria characteristic of trapped modes. Asymptotically, the solution obtained is similar to a nearly trapped mode, which is a perturbation of a genuine trapped mode.
Statistical Description of Transport in Multimode Fibers with Mode-Dependent Loss
Creators: name: Chiarawongse, P.
name: Li, H.
name: Xiong, W.
name: Hsu, C. W.
name: Cao, H.
name: Kottos, T.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Optics (physics.optics)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: We analyze coherent wave transport in a new physical setting associated with multimode wave systems where reflection is completely suppressed and mode-dependent losses together with mode-mixing are dictating the wave propagation. An additional physical constraint is the fact that in realistic circumstances the access to the scattering (or transmission) matrix is incomplete. We have addressed all these challenges by providing a statistical description of wave transport which fuses together a free probability theory approach with a Filtered Random Matrix ensemble. Our theoretical predictions have been tested successfully against experimental data of light transport in multimode fibers.
Crocidura fuliginosa
Creators: name: Cook-Price, Dawn R.
name: Petko, Olga N.
name: Makchai, Sunchai
name: Artchawakom, Taksin
name: Suwanwaree, Pongthep
Publisher: name: Zenodo
Year: 2025
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Soricomorpha
Soricidae
Crocidura
Crocidura fuliginosa

description: Crocidura fuliginosa (Blyth, 1855)
Fig. 12 A Southeast Asian shrew
Notes.
Eight individuals (Table 2) of this species were caught by funnel traps at two sites in the national park forest and observed once on a survey in human-disturbed forest. The survey sighting was on a newly disturbed dirt wall in the HDF 014 transect area approximately 20 m from the entrance of an island party site called “ Waterfall Party ”. This was the first and only time this species was observed in a survey. The location is in a human-disturbed forest very near national park forest in the southeast central area of the island. Distinguishing features of this shrew include dark fur (black) with a silvery gloss and the tail is long and thin (Hai et al. 2020).
description: Published as part of Cook-Price, Dawn R., Petko, Olga N., Makchai, Sunchai, Artchawakom, Taksin & Suwanwaree, Pongthep, 2025, Mammal diversity survey of Ko Pha-ngan in Surat Thani Province, Thailand, pp. 77-102 in ZooKeys 1229 on pages 77-102, DOI: 10.3897/zookeys.1229.118127
BRST invariant approach to quantum mechanical tunneling
Creators: name: Zhou, Jian-Ge
name: Zimmerschied, F.
name: Liang, J. -Q.
name: Mueller-Kirsten, H. J. W.
Publisher: name: arXiv
Year: 1995
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: A new approach with BRST invariance is suggested to cure the degeneracy problem of ill defined path integrals in the path-integral calculationof quantum mechanical tunneling effects in which the problem arises due to the occurrence of zero modes. The Faddeev-Popov procedure is avoided and the integral over the zero mode is transformed in a systematic way into a well defined integral over instanton positions. No special procedure has to be adopted as in the Faddeev-Popov method in calculating the Jacobian of the transformation. The quantum mechanical tunneling for the Sine-Gordon potential is used as a test of the method and the width of the lowest energy band is obtained in exact agreement with that of WKB calculations.
description: 9 pages, LaTex
Design, Synthesis and Applications Of Novel Multi-Functional Imaging Agents
Creators: name: Sae-Heng, Myra
Publisher: name: Imperial College London
Year: 2012

description: This thesis is concerned with designing and synthesising novel chemosensors for use as multi-functional imaging agents for both MRI and optical imaging towards Zn2+ sensing. The divalent zinc ion (Zn2+) is an essential biological element for living organisms and partakes in a number of biological mechanisms. As a result, any Zn2+ change in its homeostasis can lead to implications to a broad range of pathologies, both physical and neurological. This has made imaging Zn2+ ions crucial towards the elucidation of its distribution and function in cells and tissues. For this project, we have been designing novel multi - modal molecular imaging agents that will target Zn2+ in cells, and hopefully in the presence of possible competing cations. It is the synergistic combination of MRI and optical imaging that has led to the design and synthesis of a first generation of compounds. The aims have been to synthesise chemical probes based on MRI agents with the ability to sense Zn2+ levels via optical - MRI methods. In order to synthesise these probes, both a Gd3+ based MRI contrast agent and chromophore have been used for MRI and fluorescence visualization respectively. A Zn2+ sensor has also been attached, which upon binding should cause a molecular or electronic change which would be detected primarily via the chromophore. Three probes were designed and their synthesis towards them explained throughout the thesis. The first section of the thesis describes the preparation of a quinoline-based DO3A derivative for eventual complexation to a Gd3+ centre. The synthesis and purification methods are discussed, followed by some preliminary studies of the probe‟s behaviour towards Zn2+ ions. The second part of the thesis explains the various building blocks required to subsequently synthesise the final two probes, by discussing various synthetic approaches, in particular efforts to derivatise new fluorophores and Zn2+ sensing groups. The final part of the thesis discusses approaches towards a 1,7 - bi-substituted DOTA - based Gd3+ complex and a DOTA - based tetraamide Gd3+ complex. The successful probes that were developed were fully characterised and have undergone preliminary MRI and biological tests. They have been found to be MRI active with the ability to enter and be non - toxic towards cells with an ability to sense Zn2+ ions selectively. Fluorescence tests have also exhibited a change in fluorescence by the probe when perturbed by Zn2+ ions.
Syntax Error Recovery in Parsing Expression Grammars
Creators: name: Medeiros, Sérgio
name: Mascarenhas, Fabio
Publisher: name: arXiv
Year: 2018
Subjects: subject: Programming Languages (cs.PL)
subject: Formal Languages and Automata Theory (cs.FL)
subject: FOS: Computer and information sciences

description: Parsing Expression Grammars (PEGs) are a formalism used to describe top-down parsers with backtracking. As PEGs do not provide a good error recovery mechanism, PEG-based parsers usually do not recover from syntax errors in the input, or recover from syntax errors using ad-hoc, implementation-specific features. The lack of proper error recovery makes PEG parsers unsuitable for using with Integrated Development Environments (IDEs), which need to build syntactic trees even for incomplete, syntactically invalid programs. We propose a conservative extension, based on PEGs with labeled failures, that adds a syntax error recovery mechanism for PEGs. This extension associates recovery expressions to labels, where a label now not only reports a syntax error but also uses this recovery expression to reach a synchronization point in the input and resume parsing. We give an operational semantics of PEGs with this recovery mechanism, and use an implementation based on such semantics to build a robust parser for the Lua language. We evaluate the effectiveness of this parser, alone and in comparison with a Lua parser with automatic error recovery generated by ANTLR, a popular parser generator.
description: Published on ACM Symposium On Applied Computing 2018
MOESM1 of Targeting the NLRP3 inflammasome to Reduce Diet-induced Metabolic Abnormalities in Mice
Creators: name: Chiazza, Fausto
name: AurĂŠlie Couturier-Maillard
name: Benetti, Elisa
name: Mastrocola, Raffaella
name: Nigro, Debora
name: Cutrin, Juan
name: Serpe, Loredana
name: Aragno, Manuela
name: Fantozzi, Roberto
name: Ryffel, Bernard
name: Thiemermann, Christoph
name: Collino, Massimo
Publisher: name: figshare
Year: 2015
Subjects: subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Computational Biology

description: Supplementary material, approximately 7.90 MB.
Warped AdS near-horizon geometry of completely localized intersections of M5-branes
Creators: name: Fayyazuddin, Ansar
name: Smith, Douglas J.
Publisher: name: arXiv
Year: 2000
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We study a Hanany-Witten set-up relevant to N = 2 superconformal field theories. We find the exact near-horizon solution for this 11-dimensional system which involves intersecting M5-branes. The metric describes a warped product of AdS_5 with a manifold with SU(2) x U(1) isometry.
description: 14 pages, no figures, LaTeX; v2. minor correction to eq. (31); v3: normalization corrected, references added
Oral history interview with Lillie, 1980
Publisher: name: Columbia University
Year: 2020
Subjects: Drug addicts--United States
Dancers
Drug traffic--History--20th century.--United States
Opium abuse--History--20th century.--United States
Heroin abuse--History--20th century.--United States
Drugs--Prescribing
Crime--New York (State)

description: In this interview, Lillie discusses her life in New York City with special attention towards her drug use. Lillie describes her upbringing and family life, her choice to leave school in fifth grade and begin working, and how she became a dancer in a chorus line at the age of seventeen. She discusses how she began smoking opium in 1922, and switched to heroin in 1930 when opium became scarce. She describes the opium milieu, and the type of people she regularly smoked opium with. She discusses the price of heroin, and how much money per week she spent on heroin. Lillie discusses her hustle of shoplifting and reselling merchandise, and her resulting three stints in the Women's House of Detention. She describes her experience at Lexington, Kentucky Hospital which she visited twice for detox in the early 1950s. She compares opium and heroin. She discusses the prices of opiates in different American cities she traveled to while in show business, and compares the prices to those of New York City. She describes how she would approach physicians for morphine prescriptions. Lillie compares drug addicts in the 1930s to the 1980s in terms of average race and age. She describes how the control of the drug market in New York City changed hands from largely Jewish crime syndicates to the Italian Mafia in the late 1930s
What the Teachers' Memories Tell us About the Social in Portugal
Creators: name: Pinto, Rooney Figueiredo
Publisher: name: Zenodo
Year: 2021
Subjects: Teachers' memories
Social memory
Memory of school in a sociodynamics perspective
Estado Novo

description: Comprehended between 1933 and 1974, Estado Novo [Portuguese for New State] comprises a dictatorship period in Portugal, mainly featured by Salazar, like it also happened with Franco during Franquismo in Spain. This time is heavily marked by symbols and lessons, which served as core expressions of the regime. Memories of that time, expressed in the narratives, reflect individual and collective memories and narratives of teachers constitute a social-historical material and exceptional sources for understanding the context of school during the totalitarian regime in Portugal. The importance of these narratives relies on the fact that collective memory is the point of social and historical identity of the community members, as Halbwachs pointed out, and the need of those narratives to establish an individual memory according to the collective memory, as highlighted by Ricoeur. Through the exercise of memory, biographical events and social imaginary emerge in dialogue with the school culture and the identity of the teachers. As part of an ongoing investigation, this paper aims to present some reflections on: what the teachers’ memories tell us about the social in Portugal during Estado Novo what memoirs emerge when we evoke the memories from school time during Estado Novo in Portugal and and how narratives reflect the social perspectives in the individual and collective memories. Choosing a qualitative approach, content analysis is used to treat the data collected from interviews taken since 2019 with teachers from Estado Novo (the case of one former teacher and one former student will be presented as example for this analysis for this paper), which permitted to establish a social historical scenario of students and teachers, emphasizing on challenges and difficulties of the school of this time, especially over the influence of political context of authoritarian regime over the behavior of teachers, students and families, as much of what is remembered consists on authority, economic difficulties, classroom iconography, textbooks and school routine. These narratives richly express the memories of teaching practice routines, students' routines, relationship between school, families and community, fragmented in different perspectives (educational, economic, political and social), but also expose a reconstruction of memory according to one’s current perceptions, allowing the observation of the school memory in a sociodynamic perspective.
SymbexNet: Checking Network Protocol Implementations using Symbolic Execution
Creators: name: Song, JaeSeung
Publisher: name: Imperial College London
Year: 2013

description: The implementations of network protocols, such as DNS, DHCP and Zeroconf, are prone to flaws, security vulnerabilities and interoperability issues caused by ambiguous requirements in protocol specifications. Detecting such problems is not easy because (i) many bugs manifest themselves only after prolonged operation; (ii) the state space of complex protocol implementations is large; and (iii) problems often require additional information about correct behaviour from specifications. This thesis presents a novel approach to detect various types of flaws in network protocol implementations by combining symbolic execution and rule-based packet matching. The core idea behind our approach is to generate automatically high-coverage test input packets for a network protocol implementation. For this, the protocol implementation is run using a symbolic execution engine to obtain test input packets. These packets are then used to detect potential violations of rules that constrain permitted input and output packets and were derived from the protocol specification. We propose a technique that repeatedly performs symbolic execution on selected test input packets to achieve broad and deep exploration of the implementation state space. In addition, we use the generated test packets to check interoperability between different implementations of the same network protocol. We present a system based on these techniques, SYMBEXNET, and show that it can automatically generate test input packets that achieve high source code coverage and discover various bugs. We evaluate SYMBEXNET on multiple implementations of two network protocols: Zeroconf, a service discovery protocol, and DHCP, a network configuration protocol. SYMBEXNET is able to discover non-trivial bugs as well as interoperability problems, most of which have been confirmed by the developers.
Structure Formation with Generalized Dark Matter
Creators: name: Hu, Wayne
Publisher: name: arXiv
Year: 1998
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The next generation of cosmic microwave background (CMB) experiments, galaxy surveys, and high-redshift observations can potentially determine the nature of the dark matter observationally. With this in mind, we introduce a phenomenological model for a generalized dark matter (GDM) component and discuss its effect on large-scale structure and CMB anisotropies. Specifying the gravitational influence of the otherwise non-interacting GDM requires not merely a model for its equation of state but one for its full stress tensor. From consideration of symmetries, conservation laws, and gauge invariance, we construct a simple but powerful 3 component parameterization of these stresses that exposes the new phenomena produced by GDM. Limiting cases include: a particle component (e.g. WIMPS, radiation or massive neutrinos), a cosmological constant, and a scalar field component. Intermediate cases illustrate how the clustering properties of the dark matter can be specified independently of its equation of state. This freedom allows one to alter the amplitude and features in the matter power spectrum relative to those of the CMB anisotropies while leaving the background cosmology fixed. Conversely, observational constraints on such properties can help determine the nature of the dark matter.
description: 13 pages, 10 figures, accepted to ApJ. Typo in eqn (A8) corrected
Benthic macroinvertebrate assemblages of a stream-lake network in the upper zone of the trans-Andean basin of the Valdivia River (Chile)
Creators: name: Salvo, Jacqueline
name: Valdovinos, Claudio
name: Fierro, Pablo
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Cancer

description: Stream-lake networks include multiple transition zones between lake-like and river-like conditions. This study analysed environmental features, macroinvertebrate assemblages (MIB) and functional feeding groups in outlet, inlet and tributary streams (i.e. streams other than the main stem) of a stream-lake network in Chilean Andean lakes, to verify if lake outlets reflect an ecotone condition. Permutational analysis of variance and canonical analysis of principal coordinates based on environmental features and MIB revealed a significant difference between stream types. Higher taxa richness was found in tributaries, whereas population densities, equitability and diversity indices varied between stream types. Eighty-five taxa were identified, with 7% of taxa found exclusively in outlets, 5% in inlets, and 22% in tributaries. Collector-gatherers were dominant in all stream types and there was no statistical differences among feeding groups and stream types. The distance-based linear model identified water temperature, % rock, % sand, and % FPOM coverage as having significant influence on richness and density of MIB in summer, while water temperature and %FPOM coverage were significant in spring. Our results suggest that lake outlets house MIB different than lake inlets and tributaries, as well as environmental variables, supporting the idea that Andean lake outlets reflect an ecotone condition.
Generalized KdV and Quantum Inverse Scattering Description of Conformal Minimal Models
Creators: name: Fioravanti, Davide
name: Ravanini, Francesco
name: Stanishkov, Marian
Publisher: name: arXiv
Year: 1995
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We propose an alternative description of 2 dimensional Conformal Field Theory in terms of Quantum Inverse Scattering. It is based on the generalized KdV systems attached to $A_2^{(2)}$, yielding the classical limit of Virasoro as Poisson bracket structure. The corresponding T-system is shown to coincide with the one recently proposed by Kuniba and Suzuki. We classify the primary operators of the minimal models that commute with all the Integrals of Motion, and that are therefore candidates to perturb the model by keeping the conservation laws. For our $A_2^{(2)}$ structure these happen to be $ϕ_{1,2},ϕ_{2,1},ϕ_{1,5}$, in contrast to the $A_1^{(1)}$ case, studied by Bazhanov, Lukyanov and Zamolodchikov~\cite{BLZ}, related to $ϕ_{1,3}$.
description: 12 pages, latex. 1 reference added
A model for time-dependent cosmological constant
Creators: name: Novello, M.
name: Barcelos-Neto, J.
name: Salim, J. M.
Publisher: name: arXiv
Year: 2000
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We present a model for a spacetime dependent cosmological {\it constant}. We make a realization of this model based on a possible quantum aspects of the initial stage of the universe and relate the cosmological constant with the chiral anomaly.
description: 5 pages, Revtex (multicol). Revised version to appear in Classical and Quantum Gravity
Tupaia belangeri
Creators: name: Cook-Price, Dawn R.
name: Petko, Olga N.
name: Makchai, Sunchai
name: Artchawakom, Taksin
name: Suwanwaree, Pongthep
Publisher: name: Zenodo
Year: 2025
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Scandentia
Tupaiidae
Tupaia
Tupaia belangeri

description: Tupaia belangeri (Wagner, 1841)
Fig. 12 B Common tree shrew
Notes.
Eleven individuals (Table 2) of this species were observed on camera traps in four national park forested transects and camera sites in addition to capture via live traps in two different national park forest sites and one human-disturbed forest site (Fig. 6).
description: Published as part of Cook-Price, Dawn R., Petko, Olga N., Makchai, Sunchai, Artchawakom, Taksin & Suwanwaree, Pongthep, 2025, Mammal diversity survey of Ko Pha-ngan in Surat Thani Province, Thailand, pp. 77-102 in ZooKeys 1229 on pages 77-102, DOI: 10.3897/zookeys.1229.118127
Additional file 22: of Deep proteomic network analysis of Alzheimerâ s disease brain reveals alterations in RNA binding proteins and RNA splicing associated with disease
Creators: name: Johnson, Erik
name: Dammer, Eric
name: Duong, Duc
name: Luming Yin
name: Thambisetty, Madhav
name: Troncoso, Juan
name: Lah, James
name: Levey, Allan
name: Seyfried, Nicholas
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Figure S15. Enrichment of RNA Binding Proteins in TMT Network Module 18. Graphical representation of the correlation relationships among proteins for lightgreen module M18, with proteins centrally located representing those most highly correlated with other proteins in the module. Proteins annotated as RNA binding proteins in geneontology.org are highlighted in yellow. (PDF 177Â kb)
Knots and solenoids that cannot be attractors of self-homeomorphisms of $\mathbb{R}^3$
Creators: name: Barge, Héctor
name: Sánchez-Gabites, J. J.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Geometric Topology (math.GT)
subject: Dynamical Systems (math.DS)
subject: FOS: Mathematics

description: As a first step to understand how complicated attractors for dynamical systems can be, one may consider the following realizability problem: given a continuum $K \subseteq \mathbb{R}^3$, decide when $K$ can be realized as an attractor for a homeomorphism of $\mathbb{R}^3$. In this paper we introduce toroidal sets as those continua $K \subseteq \mathbb{R}^3$ that have a neighbourhood basis comprised of solid tori and, generalizing the classical notion of genus of a knot, give a natural definition of the genus of toroidal sets and study some of its properties. Using these tools we exhibit knots and solenoids for which the answer to the realizability problem stated above is negative.
description: 25 pages, 3 figures
Null Surfaces, Initial Values and Evolution Operators for Spinor Fields
Creators: name: Jacob, Ovid C.
name: Adler, Ronald J.
Publisher: name: arXiv
Year: 1995
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We analyze the initial value problem for spinor fields obeying the Dirac equation, with particular attention to the characteristic surfaces. The standard Cauchy initial value problem for first order differential equations is to construct a solution function in a neighborhood of space and time from the values of the function on a selected initial value surface. On the characteristic surfaces the solution function may be discontinuous, so the standard Cauchy construction breaks down. For the Dirac equation the characteristic surfaces are null surfaces. An alternative version of the initial value problem may be formulated using null surfaces; the initial value data needed differs from that of the standard Cauchy problem, and in the case we here discuss the values of separate components of the spinor function on an intersecting pair of null surfaces comprise the necessary initial value data. We present an expression for the construction of a solution from null surface data; two analogues of the quantum mechanical Hamiltonian operator determine the evolution of the system.
description: 21 pages, phyzzx
Neutron Stars: Formation and Structure
Creators: name: Kutschera, Marek
Publisher: name: arXiv
Year: 1998
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: A short introduction is given to astrophysics of neutron stars and to physics of dense matter in neutron stars. Observed properties of astrophysical objects containing neutron stars are discussed. Current scenarios regarding formation and evolution of neutron stars in those objects are presented. Physical principles governing the internal structure of neutron stars are considered with special emphasis on the possible spin ordering in the neutron star matter.
description: 26 pages, plain TeX, 3 eps figs. Lectures given at the XXV Mazurian Lakes School of Physics in Piaski, Poland, August 1997
MOESM1 of Cysteine Oxidation Targets Peroxiredoxins 1 and 2 for Exosomal Release through a Novel Mechanism of Redox-Dependent Secretion
Creators: name: Mullen, Lisa
name: Eva-Maria Hanschmann
name: Lillig, Christopher
name: Herzenberg, Leonore
name: Ghezzi, Pietro
Publisher: name: figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Computational Biology

description: Supplementary material, approximately 3.37 MB.
Statistical Methods in Neuroimaging Genetics: Pathways Sparse Regression and Cluster Size Inference
Creators: name: Silver, Matthew
Publisher: name: Imperial College London
Year: 2013

description: In the field of neuroimaging genetics, brain images are used as phenotypes in the search for genetic variants associated with brain structure or function. This search presents a formidable statistical challenge, not least because of the very high dimensionality of genotype and phenotype data produced by modern SNP (single nucleotide polymorphism) arrays and high resolution MRI. This thesis focuses on the use of multivariate sparse regression models such as the group lasso and sparse group lasso for the identification of gene pathways associated with both univariate and multivariate quantitative traits. The methods described here take particular account of various factors specific to pathways genome-wide association studies including widespread correlation (linkage disequilibrium) between genetic predictors, and the fact that many variants overlap multiple pathways. A resampling strategy that exploits finite sample variability is employed to provide robust rankings for pathways, SNPs and genes. Comprehensive simulation studies are presented comparing one proposed method, pathways group lasso with adaptive weights, to a popular alternative. This method is extended to the case of a multivariate phenotype, and the resulting pathways sparse reduced-rank regression model and algorithm is applied to a study identifying gene pathways associated with structural change in the brain characteristic of Alzheimer’s disease. The original model is also adapted for the task of ’pathways-driven’ SNP and gene selection, and this latter model, pathways sparse group lasso with adaptive weights, is applied in a search for SNPs and genes associated with elevated lipid levels in two separate cohorts of Asian adults. Finally, in a separate section an existing method for the identification of spatially extended clusters of image voxels with heightened activation is evaluated in an imaging genetic context. This method, known as cluster size inference, rests on a number of assumptions. Using real imaging and SNP data, false positive rates are found to be poorly controlled outside of a narrow range of parameters related to image smoothness and activation thresholds for cluster formation.
Additional file 21: of Deep proteomic network analysis of Alzheimerâ s disease brain reveals alterations in RNA binding proteins and RNA splicing associated with disease
Creators: name: Johnson, Erik
name: Dammer, Eric
name: Duong, Duc
name: Luming Yin
name: Thambisetty, Madhav
name: Troncoso, Juan
name: Lah, James
name: Levey, Allan
name: Seyfried, Nicholas
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified

description: Figure S14. Differential Abundance of Alternative Exon-Exon Junction Peptides by TMT Network Module. For case group comparisons AD vs. AsymAD (top), AD vs. control (middle), and AsymAD vs. control (bottom), the fraction of alternative exon-exon junction (alt-EEjxn) peptides within each network module that were significantly different between the two case groups was plotted by bar graph, with each bar color coded according to the average log2 difference of the alt-EEjxn peptides in each direction (increased or decreased). The arrows in the AD vs. AsymAD comparison highlight modules that showed an increase in the fraction of alt-EEjxns or an increase in the magnitude of differential abundance, or both, compared to AD vs. control. (PDF 718Â kb)
OM Theory in Diverse Dimensions
Creators: name: Gopakumar, Rajesh
name: Minwalla, Shiraz
name: Seiberg, Nathan
name: Strominger, Andrew
Publisher: name: arXiv
Year: 2000
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Open string theories can be decoupled from closed strings and gravity by scaling to the critical electric field. We propose dual descriptions for the strong coupling limit of these NCOS (Non-Commutative Open String) theories in six or fewer spacetime dimensions. In particular, we conjecture that the five-dimensionsal NCOS theory at strong coupling, is a theory of light Open Membranes (OM), decoupled from gravity, on an M5-brane with a near-critical three-form field strength. The relation of OM theory to NCOS theories resembles that of M theory to Type II closed string theories. In two dimensions we conjecture that supersymmetric U($n$) gauge theory with a unit of electric flux is dual to the NCOS theory with string coupling $1 \over n$. A construction based on NS5-branes leads to new theories in six dimensions generalising the little string theory. A web of dualities relates all the above theories when they are compactified on tori.
description: v1: 18 pages, harvmac, devnag, 3 figs; v2: Major Additions. Section added on new near critical NS5-brane theories. Subsection 5.1 deleted. References added. 26 pages
Asymptotics of Wiener Functionals and Applications to Mathematical Finance
Creators: name: Violante, Sean
Publisher: name: Imperial College London
Year: 2012

description: In this thesis we study asymptotic expansions for option pricing with emphasis on small noise “singular perturbations” which are, as we shall see, better suited than the more popular small time asymptotics to approximate typical stochastic volatility models. In particular, we argue that analytic solutions are unlikely for more advanced models, and therefore numerical methods of calculation are required. The following are the main results of the thesis. We show that zeroth order implied volatility is given by the large deviation rate function under minimal assumptions. We then show a small noise sample path large deviations principle for a class of two dimensional positive diffusions of relevance to finance. We numerically calculate the large deviations rate function for an example process, Gatheral’s Double CEV model, and highlight the speed and accuracy of the approximation. We then investigate Yoshida-Watanabe asymptotic expansions and develop a Mathematica program to derive them automatically. Lastly, we develop a small noise asymptotic expansion for marginal densities of solutions of SDEs (joint work). Using this we determine the large strike implied volatility for the Stein-Stein model and the Schobel and Zhu model by rescaling into a small noise problem.
DYNAMICS OF INFECTION OF FISH BY RACACENOSIS IN SELECTED FISHERIES IN THE SAMARKAND REGION
Creators: name: Yunusov Kh.B., Doctor of Philosophy, professor, scientific supervisor
name: Kurbanov F.I. v.f.f.g. ( PhD ), Samarkand State University of Veterinary Medicine, Animal Husbandry and  Biotechnology
name: Suyundiqov D. graduate student, Samarkand State University of Veterinary Medicine, Animal Husbandry and  Biotechnology
name: Khushnazarova M.I. student, Samarkand State University of Veterinary Medicine, Animal Husbandry and  Biotechnology
name: Khujayeva K. student, Samarkand State University of Veterinary Medicine, Animal Husbandry and  Biotechnology
Publisher: name: Zenodo
Year: 2024

description: White  carp  –  20.0%,  eel  –  14.6%.  The  three  fish  species  were contaminated with crustaceans by an average of 19.3%. Based on the results of our surveys, it was established that in four districts of the Samarkand region, 18.0% are infected with 2 types of crustaceans: lerniosis, 1.3% are infected with arguliosis