cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
A field-tested robotic harvesting system for iceberg lettuce.
Creators: name: Birrell, Simon
name: Hughes, Josie
name: Cai, Julia Y
name: Iida, Fumiya
Publisher: name: Apollo - University of Cambridge Repository
Year: 2019
Subjects: Agriculture
Learning
Mechanisms

description: Agriculture provides an unique opportunity for the development of robotic systems; robots must be developed which can operate in harsh conditions and in highly uncertain and unknown environments. One particular challenge is performing manipulation for autonomous robotic harvesting. This paper describes recent and current work to automate the harvesting of iceberg lettuce. Unlike many other produce, iceberg is challenging to harvest as the crop is easily damaged by handling and is very hard to detect visually. A platform called Vegebot has been developed to enable the iterative development and field testing of the solution, which comprises of a vision system, custom end effector and software. To address the harvesting challenges posed by iceberg lettuce a bespoke vision and learning system has been developed which uses two integrated convolutional neural networks to achieve classification and localization. A custom end effector has been developed to allow damage free harvesting. To allow this end effector to achieve repeatable and consistent harvesting, a control method using force feedback allows detection of the ground. The system has been tested in the field, with experimental evidence gained which demonstrates the success of the vision system to localize and classify the lettuce, and the full integrated system to harvest lettuce. This study demonstrates how existing state-of-the art vision approaches can be applied to agricultural robotics, and mechanical systems can be developed which leverage the environmental constraints imposed in such environments.
Visual and anatomical results of relaxing retinotomy in complex rhegmatogenous retinal detachment cases
Creators: name: Tripathy, Koushik
name: Yog Raj Sharma
name: Rajvardhan Azad
name: Chandra, Parijat
name: Bandyopadhyay, Gopal
name: Koushik Basu
Publisher: name: figshare
Year: 2015
Subjects: Medicine

description: Visual and anatomical results of relaxing retinotomy in complex rhegmatogenous retinal detachment cases. K. Tripathy, Y. R. Sharma, R. V. Azad, P. Chandra, G. Bandyopadhyay, K. Basu 5th World Congress on Controversies in Ophthalmology (COPHy) 2014-03 | conference-paper
Inclusion in Practice: An explanatory study of how patterns of classroom discourse shape processes of educational inclusion in Tanzanian secondary school classrooms
Creators: name: Walker, Lisa Beth
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: inclusion
discourse analysis
Tanzania
Classroom-based discourse
I-R-F

description: While access to secondary school is increasingly available to a larger and more heterogeneous population of learners, expansion in enrolment masks the reality that educational inequalities are widening. Using a comparative and in-depth qualitative research design, this dissertation explores processes of educational inclusion and exclusion as they unfold within the classroom walls, where it is teachers who determine how access to the curriculum and classroom culture is created and sustained. Data generated through 12 lesson observations and accompanying stimulated recall interviews enable consideration of how patterns of teacher discourse influence teacher capacity to foster inclusivity, and why such patterns emerge. Data gathered through key informant interviews and focus group discussions support the scrutinization and triangulation of tentative findings drawn from the observation and stimulated recall data. This research is premised on the need to expand our knowledge of what inclusive education can mean in classrooms typically characterized by material and human deprivation, and in teaching approaches most often defined by a strong pedagogic tradition of knowledge transmission. The findings support the construction of an explanatory framework revealing the ways in which patterns of classroom discourse shape teacher capacity to foster inclusion in Tanzanian secondary school classrooms. They reveal the importance of three moments embedded within each teacher-student interaction: The moment within which a turn is allocated, the moment within which a student response is interpreted by a teacher, and the moment within which a teacher then follows up. The findings demonstrate the power of the multiple continua of discursive strategies within which teachers move, revealing the specific decisions and respective trade-offs which influence teacher capacity to foster processes of educational inclusion. The findings are significant for expanding our understanding of the intersection between pedagogy and inclusion in the Tanzanian context, generating insight into that which teachers do, the reasons for why they do it, and the contextually relevant levers for change.
description: N/A
Ultra wide field imaging in uveitic non-dilating pupil
Creators: name: Tripathy, Koushik
name: Varun Gogia
name: Yog Raj Sharma
name: Venkatesh, Pradeep
name: Rajpal Vohra
name: Chawla, Rohan
name: Babulal Kumawat
name: Bypareddy, Ravi
name: Laxman Vekaria
Publisher: name: figshare
Year: 2015
Subjects: Medicine

description: Ultra wide field imaging in uveitic non-dilating pupil. Koushik Tripathy, Varun Gogia, Yog Raj Sharma, Pradeep Venkatesh, Rajpal Vohra, Rohan Chawla, Babulal Kumawat, Ravi Bypareddy, Laxman Vekaria
The 14th Annual meeting of Uveitis Society of India
2014-11 | conference-paper
A randomized controlled trial to evaluate the role of postoperative strict prone positioning for one day versus three days in anatomical closure of idiopathic full thickness macular hole: a preliminary study
Creators: name: Rajpal Vohra
name: Rajive Kumar
name: Tripathy, Koushik
name: Venkatesh, Pradeep
name: S. N. Dwivedi
name: Rajvardhan Azad
Publisher: name: figshare
Year: 2015
Subjects: Medicine

description: A randomized controlled trial to evaluate the role of postoperative strict prone positioning for one day versus three days in anatomical closure of idiopathic full thickness macular hole: a preliminary study. Rajpal Vohra, Rajive Kumar, Koushik Tripathy, Pradeep Venkatesh, S. N. Dwivedi, Rajvardhan Azad
The 2nd Asia-Pacific Glaucoma Congress held in conjunction with the 10th International Symposium of Ophthalmology – Hong Kong (APGC-ISOHK 2014 Hong Kong)
2014-09 | conference-paper
Johannes Kelpius (1673–1708): Mystic on the Wissahickon
Creators: name: Juhász, Levente
Publisher: name: Cromohs - Cyber Review of Modern Historiography
Year: 2016

description: This article attempts to give an overview of Kelp's career from Transylvania to Pennsylvania, his religious views, and the intellectual background of his thought. Using archival material it reasserts the importance of the connections between the German Pietist group and the London Quakers and highlights some of the hazier points of the Kelpius scholarship.
description: Cromohs - Cyber Review of Modern Historiography, 2006: Recent historiographical trends of the British Studies
Mitotane Inhibits Proliferation and Affects Mitochondrial Metabolism in Human Breast, Lung and Colon Cancer Cell Lines
Creators: name: Dorota Dworakowska, Paulina Szyszka
name: Diaz-Cano, Salvador J.
Publisher: name: figshare
Year: 2015
Subjects: Pathology
Medicine
Cancer
Biological Techniques
Molecular Biology
Cell Biology

description: Mitotane acts specifically on adrenocortical tissue and is used as a standard treatment in adrenocortical cancer. The exact mechanism of its action remains unknown, despite its clinical use for more than 60 years. Recently it has been suggested that in human adrenocortical cancer cells, mitotane alters mitochondrial respiratory chain activity by inducing cytochrome c oxidase defect. The aim of the study was to assess the effect of Mitotane on proliferation, apoptosis and mitochondrial metabolism in human breast (MCF7), lung (H1975) and colon (HKe-3) cancer cell lines and compare it with our previous results in human adrenocortical cancer (H295R). The proliferation rate of cells was assessed by the resazurin assay. The apoptosis induction was determined by the caspase-3-like activity assay. Changes in expression of the 84 genes involved in mitochondrial metabolism (Complex I: NADH-Coenzyme Q Reductase; Complex II: Succinate-Coenzyme Q Reductase; Complex III: Coenzyme Q-Cytochrome c Reductase; Complex IV: Cytochrome c Oxidase; Complex V: ATP Synthase) were assessed using Mitochondrial Energy Metabolism Plus PCR Arrays, Qiagen. Optimum cytotoxic effects of Mitotane were observed after 24 and 48 hours incubation for H295R cells and HKe-3, MCF7, H1975; respectively. In the H295R cell line a 10uM concentration of Mitotane resulted in 27.0±0.9% cytotoxicity, whereas in HKe-3, MCF7 and H1975 cell lines concentration of 40uM caused cytotoxicity of 48.5±5.2%; 40.2±2.5% and 28.6±2.1%, respectively. 100% cytotoxicity was achieved at a concentration of 20uM for H295R and 100uM for HKe-3, MCF7 and H1975. Cytotoxic effects were negatively influenced by the number of cells/well in H295R, HKe-3, and H1975 but not in MCF7. Although Mitotane had a strong cytotoxic effect on all tested cell lines, caspase-3 activity was induced only in H295R cell line. Expression levels of several genes involved in mitochondrial metabolism was changed by Mitotane; however different genes were affected in different cell lines. Of 84 genes investigated, mRNA levels were decreased/increased by >2 folds in 18/4; 10/29; 6/7 and 28/2 in H295R, HKe-3, MCF7 and H1975, respectively. Mitotane exhibits anti-proliferative activity in breast, colon and lung cancer cell lines. It affects mitochondrial metabolism regardless of the type of cancer and hence his cytotoxic effect is not specific to the adrenal cortex only.
Mitotane Inhibits Proliferation and Affects Mitochondrial Metabolism in Human Breast, Lung and Colon Cancer Cell Lines. Available from: https://www.researchgate.net/publication/274961069_Mitotane_Inhibits_Proliferation_and_Affects_Mitochondrial_Metabolism_in_Human_Breast_Lung_and_Colon_Cancer_Cell_Lines [accessed Apr 14, 2015].
Ellochelon vaigiensis
Creators: name: Sayyadzadeh, Golnaz
name: Esmaeili, Hamid Reza
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mugiliformes
Mugilidae
Ellochelon
Ellochelon vaigiensis

description: 291. Ellochelon vaigiensis (Quoy & Gaimard, 1825)
Common name. Squaretail mullet
Taxonomy. Original description: Mugil vaigiensis Quoy & Gaimard 1825: 337, pl. 59 (fig. 2) [Waigiou [Pulau Waigeo, Papua Barat Province, Indonesia, western Pacific]; holotype (unique): MNHN A-3641].
Revisions. None.
Illustrations. Jouladeh-Roudbar et al. (2020: 275, fig. 501).
Distribution in Iran. —Distribution in River Basin: Persis, Hormuz, Tigris.—Distribution in Ecoregions: 441- Lower Tigris & Euphrates, 442-Upper Tigris & Euphrates, 451-Northern Hormuz Drainages.
Status in Iran. [Native].—Biah.—Listed in previous checklists from Iran by Esmaeili et al. (2017 a, 2018); Jouladeh-Roudbar et al. (2020), and Eagderi et al. (2022).—Iran material: ZM-CBSU.
Conservation. —IUCN: LC.
description: Published as part of Sayyadzadeh, Golnaz & Esmaeili, Hamid Reza, 2024, Freshwater lamprey and fishes of Iran: Reappraisal and updated checklist with a note on Eagderi et al. (2022), pp. 1-99 in Zootaxa 5402 (1) on pages 89-90, DOI: 10.11646/zootaxa.5402.1.1, http://zenodo.org/record/10524097
JOSÉ MARÍA BLÁZQUEZ Y EL PROYECTO DE IMPLANTACIÓN DE LA HISTORIA GENERAL DE LAS RELIGIONES EN ESPAÑA
Creators: name: DIEZ DE VELASCO, Francisco
Publisher: name: Zenodo
Year: 2020
Subjects: Jose Maria Blazquez Martinez, History of Religions, religious studies in Spain

description: Publicado en: F. Diez de Velasco (ed.), Ephemenris Blázquez I: José María Blázquez y la Historia de las Religiones, Madrid, Ediciones Clásicas, 2020, pp. 9-93.
Intellectual Freedom-Social Justice Talk 2014-04-10
Creators: name: Shockey, Kyle
Publisher: name: figshare
Year: 2015
Subjects: subject: Library and Information Studies
subject: FOS: Media and communications

description: Talk at the University of Illinois Symposium on LIS Education on 4/10/2014: "Intellectual Freedom is Not Social Justice: ALA Accreditation, Symbolic Capital, and LIS Curricula."
“Quo Vadis?” Historiographical Trends in British Studies: The Church of England in the Eighteenth Century
Creators: name: Gibson, William
Publisher: name: Cromohs - Cyber Review of Modern Historiography
Year: 2016

description: My contention that “the culture of eighteenth century English society was infused -indeed drenched- with Anglicanism” means that there are few topics in this period that cannot be enhanced by the inclusion of a religious perspective.[36] Let this be a call to arms, to be intolerant of purely secular accounts of eighteenth century English society, and to restore religion and the Church of England to the place that they rightfully should command in the history of the century.
description: Cromohs - Cyber Review of Modern Historiography, 2006: Recent historiographical trends of the British Studies
Sykes's Shadow: Thoughts on the Recent Historiography of the Eighteenth-Century Church of England
Creators: name: Ingram, Robert G.
Publisher: name: Cromohs - Cyber Review of Modern Historiography
Year: 2016

description: The historiography of the eighteenth-century Church lacks both the sophistication and wider influence that those of the sixteenth-, seventeenth-, or nineteenth-century Church enjoy. If things are to change, we must step outside of Sykes's shadow once and forever. But do we have the will to do so?
description: Cromohs - Cyber Review of Modern Historiography, 2006: Recent historiographical trends of the British Studies
The Theologies of the Nonjurors: A Historiographical Essay
Creators: name: Cornwall, Robert D.
Publisher: name: Cromohs - Cyber Review of Modern Historiography
Year: 2016

description: A small schismatic band of English churchmen who opposed the eviction of James II from the throne England by allies of his daughter and son-in-law, the Nonjurors had an influence greater than their numbers would suggest. Consisting of some of the leading lights of the day, including the Archbishop of Canterbury, the Nonjurors offered an alternative political theology to the one presented by the supporters of the new regime. While the historiographical debate has centered on whether the root cause of the schism was a "church point" or "state point" the debate, at least in the beginning, represented a clash of political theologies and theological traditions.
description: Cromohs - Cyber Review of Modern Historiography, 2006: Recent historiographical trends of the British Studies
The English Civil Wars and the Interregnum in Italian Historiography in the 17th century
Creators: name: Villani, Stefano
Publisher: name: Cromohs - Cyber Review of Modern Historiography
Year: 2016

description: This essay offers a survey of contemporary Italian accounts of the English Revolution.
description: Cromohs - Cyber Review of Modern Historiography, 2006: Recent historiographical trends of the British Studies
German Historians and the English Revolution: 17th and 20th Century
Creators: name: Mahlberg, Gaby M.
Publisher: name: Cromohs - Cyber Review of Modern Historiography
Year: 2016

description: With European integration in full swing works by Quentin Skinner, Martin van Gelderen and others have come to locate England more and more within a European context, and scholars within the Anglo-American tradition now begin to see that the execution of Charles I was not just the starting point for the English Revolution but also the "last act of the Thirty Years War." Yet, it is necessary not only to study England comparatively, but also as an integrated part of a wider European context. The future challenge for historians is to understand what connects the ideas and events in England to those on the European Continent.
description: Cromohs - Cyber Review of Modern Historiography, 2006: Recent historiographical trends of the British Studies
‘Pym’s junto’ in the ante-bellum Long Parliament: radical or not?
Creators: name: Van Duinem, Jared
Publisher: name: Cromohs - Cyber Review of Modern Historiography
Year: 2016

description: When historians discuss the Long Parliament they frequently refer to a hazy and often ill-defined collection of individuals invariably centred around the figure of John Pym. This assemblage is variously referred to as 'Pym's group', 'Pym and his allies', or 'Pym and his supporters'. Probably the most common appellation has become 'Pym's junto', or more often simply the 'junto'. Over the years this junto has assumed a variety of historiographical guises and its role within the Long Parliament has been the subject of some debate. This paper will first briefly sketch this historiography and then go on to discuss the radicalism of the junto in the first twelve months of the Long Parliament.
description: Cromohs - Cyber Review of Modern Historiography, 2006: Recent historiographical trends of the British Studies
Mugil cephalus Linnaeus 1758
Creators: name: Sayyadzadeh, Golnaz
name: Esmaeili, Hamid Reza
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mugiliformes
Mugilidae
Mugil
Mugil cephalus

description: 292. Mugil cephalus Linnaeus, 1758
Common name. Flathead mullet
Taxonomy. Original description: Mugil cephalus Linnaeus, 1758: 316 [European sea, Europe; syntypes: NRM 43 (1), 44 (2), 143 (1)].
Revisions. None.
Illustrations. Jouladeh-Roudbar et al. (2020: 277, fig. 503).
Distribution in Iran. —Distribution in River Basin: Tigris, Makran, Caspian Sea.—Distribution in Ecoregions: 442-Upper Tigris & Euphrates, 434-Kura-South Caspian Drainages, 701-Baluchistan.
Status in Iran. [Native].—Kefal mahi-e sarpahn.—Listed in previous checklists from Iran by Esmaeili et al. (2017 a, 2018); Jouladeh-Roudbar et al. (2020) and Eagderi et al. (2022).—Iran material: ZM-CBSU.
Conservation. —IUCN: LC.
description: Published as part of Sayyadzadeh, Golnaz & Esmaeili, Hamid Reza, 2024, Freshwater lamprey and fishes of Iran: Reappraisal and updated checklist with a note on Eagderi et al. (2022), pp. 1-99 in Zootaxa 5402 (1) on page 90, DOI: 10.11646/zootaxa.5402.1.1, http://zenodo.org/record/10524097
Could “Eutopian politics […] never be drawn into use”? Utopianism and radicalism in the 1640s
Creators: name: Houston, Chloe
Publisher: name: Cromohs - Cyber Review of Modern Historiography
Year: 2016

description: A utopian moment and a radical one may have coincided in the 1640s, but they were by no means identical. Utopian literature was not only the preserve of 'radicals'; instead, utopian writings permeated and were permeated by wider movements for reform, constituting an important strain of reformist literature which proliferated during this period, even though utopias themselves were not found exclusively helpful by those committed to reform, radical or otherwise.
description: Cromohs - Cyber Review of Modern Historiography, 2006: Recent historiographical trends of the British Studies
Massive 4-Gland Parathyroid Hyperplasia Initially Detected as a Parathyroid Adenoma
Creators: name: Nicolich-Henkin, Sophie
name: Goldstein, Michael B.
name: Roellke, Emma
name: Bilezikian, John P.
name: Rothberger, Gary D.
Publisher: name: PRIME
Year: 2024
Subjects: classificationCode: 320208
subject: Endocrinology

description: AbstractParathyroid adenoma (PA) and parathyroid hyperplasia (PH) are common causes of primary hyperparathyroidism (PHPT), for which the only definitive treatment is surgery. Abnormalities in the parathyroid glands can be identified with various imaging modalities including ultrasound (US), sestamibi scan (MIBI), 4-dimensional computed tomography (4D-CT), and positron emission tomography/computed tomography (PET/CT). While it is not uncommon for parathyroid pathology to be undetected on imaging, this is more typical of low-volume hyperplasia and smaller-sized adenomas. We present the case of a 65-year-old man with PHPT who initially had a solitary parathyroid mass detected by US, but who was ultimately discovered to have massive PH with hyperplastic glands not visualized on US or MIBI. This atypical presentation may help guide providers in decisions on ordering and interpreting various imaging modalities for patients with PHPT. In this case, 4D-CT was the only modality in which large hyperplastic glands were identified, suggesting superior sensitivity. This case also highlights the importance of intraoperative parathyroid hormone testing to aid in diagnostic prediction.
The Seeker Culture of the Thames Valley
Creators: name: Brod, Manfred
Publisher: name: Cromohs - Cyber Review of Modern Historiography
Year: 2016

description: The purpose of the present article is to give a more focussed account of the doctrines and ideologies of his Bradfield group, to attempt to situate them in their intellectual context, and make suggestions as to their provenance. I will argue that these doctrines were basically concerned with private religious strivings, and their emergence in the 1640s and early 50s into the world of social theory and public politics was a temporary aberration due to the disturbed conditions of the time. For the present purpose, and as in my previous paper on this subject, I will use the term radical to describe attempts to bring about fundamental changes in public religion or in social institutions or both, and the term conservative for resistance to radical activities. Thus, the period during which the Bradfield group may be described as radical had come to an end well before the Restoration.
description: Cromohs - Cyber Review of Modern Historiography, 2006: Recent historiographical trends of the British Studies
Chelon auratus
Creators: name: Sayyadzadeh, Golnaz
name: Esmaeili, Hamid Reza
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mugiliformes
Mugilidae
Chelon
Chelon auratus

description: 289. Chelon auratus (Risso, 1810)
Common name. Golden grey mullet
Taxonomy. Original description: Mugil auratus Risso, 1810: 344 [Nice, France, northwestern Mediterranean Sea; no types known].
Revisions. Durand & Borsa (2015: 268).
Illustrations. Jouladeh-Roudbar et al. (2020: 273, fig. 497).
Distribution in Iran. —Distribution in River Basin: Caspian Sea.—Distribution in Ecoregions: 434-Kura-South Caspian Drainages, 450-Turan Plain.
Status in Iran. [Exotic].—Kafal mahi-e talayi.—Listed in previous checklists from Iran by Esmaeili et al. (2017 a, 2018); Jouladeh-Roudbar et al. (2020) and Eagderi et al. (2022).—Iran material: ZM-CBSU.
Conservation. —IUCN: LC.
description: Published as part of Sayyadzadeh, Golnaz & Esmaeili, Hamid Reza, 2024, Freshwater lamprey and fishes of Iran: Reappraisal and updated checklist with a note on Eagderi et al. (2022), pp. 1-99 in Zootaxa 5402 (1) on page 89, DOI: 10.11646/zootaxa.5402.1.1, http://zenodo.org/record/10524097
Comparative Study Among Different Dyeing Methods of Polyester Fabric With Disperse Dyes
Creators: name: Khalil, Elias
Publisher: name: figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Organic Chemistry
subject: FOS: Chemical sciences

description: Comparative Study Among Different Dyeing Methods of Polyester Fabric With Disperse Dyes
Chelon saliens
Creators: name: Sayyadzadeh, Golnaz
name: Esmaeili, Hamid Reza
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mugiliformes
Mugilidae
Chelon
Chelon saliens

description: 290. Chelon saliens (Risso, 1810)
Common name. Leaping mullet
Taxonomy. Original description: Mugil saliens Risso, 1810: 345 [Nice, France, northwestern Mediterranean Sea; no types known].
Revisions. Durand & Borsa (2015: 268).
Illustrations. Jouladeh-Roudbar et al. (2020: 274, fig. 499).
Distribution in Iran. —Distribution in River Basin: Caspian Sea.—Distribution in Ecoregions: 434-Kura-South Caspian Drainages, 450-Turan Plain.
Status in Iran. [Exotic].—Kafal mahi-e poozeh barik.—Listed in previous checklists from Iran by Esmaeili et al. (2017 a, 2018); Jouladeh-Roudbar et al. (2020) and Eagderi et al. (2022).—Iran material: ZM-CBSU.
Conservation. —IUCN: LC.
description: Published as part of Sayyadzadeh, Golnaz & Esmaeili, Hamid Reza, 2024, Freshwater lamprey and fishes of Iran: Reappraisal and updated checklist with a note on Eagderi et al. (2022), pp. 1-99 in Zootaxa 5402 (1) on page 89, DOI: 10.11646/zootaxa.5402.1.1, http://zenodo.org/record/10524097
Clinical profile of Medicolegal cases presenting to eye casualty in a tertiary care centre in India
Creators: name: Tripathy, Koushik
name: Singh, Harsh Inder
name: Subodh Kumar Singh
name: Yog Raj Sharma
name: Venkatesh, Pradeep
name: Rajpal Vohra
name: Chawla, Rohan
name: Alkananda Behera
name: Singh, Rashmi
Publisher: name: figshare
Year: 2015
Subjects: Medicine

description: Clinical profile of Medicolegal cases presenting to eye casualty in a tertiary care centre in India. Koushik Tripathy, Harsh Inder Singh, Subodh Kumar Singh, Yog Raj Sharma, Pradeep Venkatesh, Rajpal Vohra, Rohan Chawla, Alkananda Behera, Rashmi Singh
Ocutron, 2014; The annual conference of Ocular Trauma Society of India
2014-10 | conference-paper
The management of unusual poeterior segment intraocular foreign body (PSIOFB) cases
Creators: name: Tripathy, Koushik
name: Bandyopadhyay, Gopal
name: Yog Raj Sharma
name: Koushik Basu
name: Venkatesh, Pradeep
Publisher: name: figshare
Year: 2015
Subjects: Medicine

description: The management of unusual poeterior segment intraocular foreign body (PSIOFB) cases. Koushik Tripathy, Gopal Bandyopadhyay, Yog Raj Sharma, Koushik Basu, Pradeep Venkatesh)
Ocutron, 2014, The annual conference of Ocular Trauma Society of India
2014-10 | conference-paper
Management of magnetic intraocular foreign body in inferior sulcus in a case of repaired corneal perforation
Creators: name: Singh, Harsh Inder
name: Tripathy, Koushik
name: Yog Raj Sharma
name: Venkatesh, Pradeep
name: Rajpal Vohra
name: Chawla, Rohan
name: Arora, Tarun
name: Laxman Vekaria
name: Jayanand Urkude
Publisher: name: figshare
Year: 2015
Subjects: Medicine

description: Management of magnetic intraocular foreign body in inferior sulcus in a case of repaired corneal perforation. Harsh Inder Singh, Koushik Tripathy, Yog Raj Sharma, Pradeep Venkatesh, Rajpal Vohra, Rohan Chawla, Tarun Arora, Laxman Vekaria, Jayanand Urkude
Ocutron, 2014. The annual conference of Ocular Trauma Society of India
2014-10 | conference-paper
GDGRU-DTA: Predicting Drug-Target Binding Affinity Based on GNN and Double GRU
Creators: name: Zhijian, Lyu
name: Shaohua, Jiang
name: Yigao, Liang
name: Min, Gao
Publisher: name: arXiv
Year: 2022
Subjects: subject: Quantitative Methods (q-bio.QM)
subject: Artificial Intelligence (cs.AI)
subject: Machine Learning (cs.LG)
subject: FOS: Biological sciences
subject: FOS: Computer and information sciences

description: The work for predicting drug and target affinity(DTA) is crucial for drug development and repurposing. In this work, we propose a novel method called GDGRU-DTA to predict the binding affinity between drugs and targets, which is based on GraphDTA, but we consider that protein sequences are long sequences, so simple CNN cannot capture the context dependencies in protein sequences well. Therefore, we improve it by interpreting the protein sequences as time series and extracting their features using Gate Recurrent Unit(GRU) and Bidirectional Gate Recurrent Unit(BiGRU). For the drug, our processing method is similar to that of GraphDTA, but uses two different graph convolution methods. Subsequently, the representation of drugs and proteins are concatenated for final prediction. We evaluate the proposed model on two benchmark datasets. Our model outperforms some state-of-the-art deep learning methods, and the results demonstrate the feasibility and excellent feature capture ability of our model.
description: pages:13 conferfece:DMML2022
Metal removal with two biochars made from municipal organic waste: adsorptive characterization and surface complexation modeling
Creators: name: Youchi Zhang
name: Xiaoda Tang
name: Wensui Luo
Publisher: name: Taylor & Francis
Year: 2014
Subjects: subject: Biological Sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Chemistry
subject: Earth and Environmental Sciences
subject: Engineering

description: The adsorptive characteristics of biochar produced from garden green waste (S-char) and a mixture of food waste and garden green waste (FS-char) were investigated. Adsorption of Cu2+, Zn2+, and Mn2+ onto the two biochars reached equilibrium within 48 hours. The metal adsorption was effectively described by the pseudo-second-order kinetic and Freundlich isotherm models which suggest heterogeneous chemisorption. The initial solution pH influenced adsorption of Zn2+ and Mn2+ but not of Cu2+. Simulation via a surface complexation model showed that the fraction of XOCu+ adsorbed onto biochar was increased with increasing pH until it reached the adsorption maximum at pH 8.5, while the endpoint for the maximum of XOMn+ was higher than pH 12.
The Decoupled Kinematics of high-z QSO Host Galaxies and their Lya halos
Creators: name: Drake, Alyssa
name: Neeleman, Marcel
name: Venemans, Bram P.
name: Novak, Mladen
name: Walter, Fabian
name: Banados, Eduardo
name: Decarli, Roberto
name: Farina, Emanuele Paolo
name: Mazzucchelli, Chiara
name: Trebitsch, Maxime
Publisher: name: arXiv
Year: 2022
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We present a comparison of the interstellar medium traced by [CII] (ALMA), and ionised halo gas traced by Lya (MUSE), in and around QSO host galaxies at z~6. To date, 18 QSOs at this redshift have been studied with both MUSE and high-resolution ALMA imaging; of these, 8 objects display a Lya halo. Using datacubes matched in velocity resolution, we compare and contrast the spatial and kinematic information of the Lya halos and the host galaxies' [CII] (and dust-continuum) emission. We find that the Lya halos extend typically 3-30 times beyond the interstellar medium of the host galaxies. The majority of the Lya halos do not show ordered motion in their velocity fields, whereas most of the [CII] velocity fields do. In those cases where a velocity gradient can be measured in Lya, the kinematics do not align with those derived from the [CII] emission. This implies that the Lya emission is not tracing the outskirts of a large rotating disk that is a simple extension of the central galaxy seen in [CII] emission. It rather suggests that the kinematics of the halo gas are decoupled from those of the central galaxy. Given the scattering nature of Lya, these results need to be confirmed with JWST IFU observations that can constrain the halo kinematics further using the non-resonant Ha line.
description: Published in ApJ
Carpogenic germination of sclerotia of Sclerotinia minor and ascosporic infection of pyrethrum flowers
Creators: name: O’Malley, Thomas B.
name: Hay, Frank S.
name: Scott, Jason B.
name: Gent, David H.
name: Shivas, Roger G.
name: Pethybridge, Sarah J.
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Biological Sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Earth and Environmental Sciences
subject: Microbiology
subject: Medicine

description: Carpogenic germination of sclerotia and infection of flowers by ascospores of Sclerotinia minor is rare and seldom documented in most hosts. During 2007–2009, S. minor isolates were obtained from surface-sterilized pyrethrum flowers collected from fields in Australia. The isolation frequency of S. minor from flowers in 2007, 2008 and 2009 was 15.8%, 5% and 1.4%, respectively. During these years, the prevalence of S. minor in flowers amongst pyrethrum fields varied between 10.3% and 60%. Sclerotia with apothecia, consistent in size with S. minor, were collected in one field. Colonies from individual ascospores from this isolate were identified as S. minor. A subsample of 10 S. minor isolates was selected for further studies. Phylogenetic analysis based on the internal transcribed spacer region grouped these isolates with S. minor, and distinct from published sequences of other Sclerotinia spp. Species-specific primers developed previously to differentiate the four major Sclerotinia spp. (S. sclerotiorum, S. minor, S. homoeocarpa and S. trifoliorum) were used to confirm identity. Of the 10 S. minor isolates, eight were able to carpogenically germinate in vitro. Pathogenicity of S. minor to flowers was confirmed in the greenhouse using ascospores. This study is one of the few instances documenting the ability of S. minor to infect floral tissues and the first documentation of S. minor causing flower disease of pyrethrum. These findings serve as a scaffold for further investigations into the mechanisms of flower infection by S. minor and have implications for the management of the Sclerotinia disease complex affecting pyrethrum in Australia.
Influence of invasion on natural selection in dispersal-structured populations
Creators: name: Maeso, D. Navidad
name: Patriarca, M.
name: Heinsalu, E.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Populations and Evolution (q-bio.PE)
subject: Adaptation and Self-Organizing Systems (nlin.AO)
subject: Pattern Formation and Solitons (nlin.PS)
subject: Biological Physics (physics.bio-ph)
subject: FOS: Biological sciences
subject: FOS: Physical sciences

description: We investigate how initial and boundary conditions influence the competition dynamics and outcome in dispersal-structured populations. The study is carried out through numerical modeling of the heterogeneous Brownian bugs model, in which individuals are characterized by diversified diffusion coefficients and compete for resources within a finite interaction range. We observed that if instead of being distributed randomly across the domain the population is initially localized within a small region, the dynamics and the stationary state of the system differ significantly. The outcome of the natural selection is determined by different competition processes, fluctuations, and spreading of the organisms.
description: 16 pages, 8 figures
El copista griego Jacobo Diasorino (s. XVI): estudio paleográfico y codicológico de sus manuscritos
Creators: name: Bueno, Carmen García
Publisher: name: Zenodo
Year: 2017
Subjects: paleografía griega
Greek Palaeography
Jacobo Diasorino
Iacobos Diassorinos

description: La presente tesis de doctorado versa sobre el copista rodio Jacobo Diasorino, activo a mediados del s. XVI, y supone la primera descripción de su mano con el objetivo de definir sus características principales que permitan distinguir su producción manuscrita de la de otros copistas contemporáneos, especialmente de la de Ángel Vergecio y Constantino Paleocapa, con los que participó en la copia y organización del fondo griego de la biblioteca real de Fontainebleau (París) del rey Enrique II de Francia. El trabajo se organiza en tres partes. La primera está dedicada al esbozo de su vida y trata de cubrir las lagunas habituales en su biografía. Se complementa con dos epígrafes, uno dedicado a la cuestión de la grafía de su apellido y otro a la influencia en su vida de su pariente Jacobo Basílico, déspota de Moldavia, así como con la edición de 26 cartas y 2 documentos de archivo. La segunda parte está dedicada al estudio paleográfico, codicológico e histórico de sus manuscritos, analizando aspectos como la escritura, otros copistas presentes en estos códices, la encuadernación y los posesores, elementos que permiten establecer relaciones más estrechas y comprender mejor estos objetos tanto en su contexto de producción como en su localización actual. La tercera parte la comprenden las fichas de 92 manuscritos, cuyo denominador común es la presencia completa o parcial de la mano de Jacobo Diasorino, desde un punto de vista textual, material, paleográfico, histórico y bibliográfico. El trabajo se complementa con más de sesenta láminas que ilustran la escritura tanto de Diasorino como de otros copistas identificados en esos manuscritos, así como de algunas de las encuadernaciones más peculiares, y calcos de filigranas que no se encuentran en otros catálogos. Cierran la obra la bibliografía y los índices de autores y obras, documentos de archivo, manuscritos, personas y copistas.
Phytochemical screening and antimicrobial activities of the constituents isolated from Koelreuteria paniculata leaves
Creators: name: Somayeh Ghahari
name: Heshmatollah Alinezhad
name: Ghorban Ali Nematzadeh
name: Ghahari, Sajjad
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Science Policy
subject: Biological Sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Chemistry
subject: Earth and Environmental Sciences
subject: Cell Biology
subject: Microbiology
subject: Biochemistry

description: Methanolic extract of Golden rain leaves was fractionated by column chromatography on silica gel and 18 fractions were obtained. Antimicrobial activities of fractions were investigated against Bacillus subtilis, Staphylococcus aureus, Escherichia coli and Pseudomonas aeruginosa as quality control bacteria and fungus Pyricularia grisea which causes Blast disease in rice. Fractions showed more antibacterial activity at 0.04 g/mL concentration only on B. subtilis and S. aureus as gram positive bacteria. Also, three fractions indicated excellent antifungal effect on fungus P. grisea. Moreover, in the present study, fractions that showed very good effect on microorganisms were used for gas chromatography-mass spectrometry analysis to identify different phytochemicals.
Secondary Mineral Formation During Ferrihydrite Reduction by Shewanella oneidensis MR-1 Depends on Incubation Vessel Orientation and Resulting Gradients of Cells, Fe2+ and Fe Minerals
Creators: name: Dippon, Urs
name: Schmidt, Caroline
name: Behrens, Sebastian
name: Kappler, Andreas
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Biological Sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Ecology
subject: FOS: Biological sciences
subject: Chemistry
subject: Earth and Environmental Sciences
subject: Microbiology
subject: Biochemistry

description: In previous studies on microbial ferric iron (Fe(III)) reduction varying results regarding reduction rates and secondary mineral formation have been reported for almost identical conditions regarding temperature, pH, medium composition, Fe(III) mineral identity and bulk iron concentration. Here we show that in addition to physico-chemical parameters also geometric aspects, i.e., incubation orientation and dimension of cultivation vessels, influence the reduction rates and mineralogy. We incubated the Fe(III)-reducer Shewanella oneidensis MR-1 in test tubes at ferrihydrite (FH) concentrations of 1.3–50 mM either in vertical or horizontal orientation. Cells and minerals formed a pellet at the bottom of the tubes with different thicknesses at the same initial FH concentration depending on the incubation orientation. In vertically incubated tubes thick FH pellets were present at the bottom of the tubes and magnetite was formed in all setups with ≥2.5 mM initial FH. In tubes that were incubated horizontally no magnetite was formed in presence of <5 mM initial FH. Spatially resolved analysis of the supernatant and mineral sediment including voltammetric microelectrodes, Xray diffraction and Mössbauer spectroscopy revealed strong gradients of Fe2+ in both the aqueous supernatant and mineral pellets, whereas a heterogeneous distribution of cells and minerals in the sediment pellet was detected. The highest cell density and, consequently, the initiation of FH reduction was found at the mineral-supernatant interface. This study demonstrates that small changes in incubation conditions can significantly influence and even change the experimental results of geomicrobiological experiments.
A Matter of Context: 'Radicalism' and the English Revolution
Creators: name: Burgess, Glenn
Publisher: name: Cromohs - Cyber Review of Modern Historiography
Year: 2016

description: The category 'radicalism' can be used in two ways. If we are looking at usage, what historians have generally used the term to mean, then it must be a phenomenon that is strongly situational and without a core content that can give it substantive identity; if we stipulate a definition that enables more precise attributions of identity, we run the risk of talking about our words more than the words of people in the past, because we open ourselves to the endless multiplication of definitions, and endless (fruitless) argument about which is the 'right' one. I suspect the sceptics are right, and that we would be better to find words and categories that cut less across the grain of the seventeenth-century past; but I suspect just as strongly that any hope of doing without the category of radicalism is a forlorn one.
description: Cromohs - Cyber Review of Modern Historiography, 2006: Recent historiographical trends of the British Studies
Generating and Visualizing Trace Link Explanations
Creators: name: Liu, Yalin
name: Lin, Jinfeng
name: Anuyah, Oghenemaro
name: Metoyer, Ronald
name: Cleland-Huang, Jane
Publisher: name: arXiv
Year: 2022
Subjects: subject: Software Engineering (cs.SE)
subject: Human-Computer Interaction (cs.HC)
subject: FOS: Computer and information sciences

description: Recent breakthroughs in deep-learning (DL) approaches have resulted in the dynamic generation of trace links that are far more accurate than was previously possible. However, DL-generated links lack clear explanations, and therefore non-experts in the domain can find it difficult to understand the underlying semantics of the link, making it hard for them to evaluate the link's correctness or suitability for a specific software engineering task. In this paper we present a novel NLP pipeline for generating and visualizing trace link explanations. Our approach identifies domain-specific concepts, retrieves a corpus of concept-related sentences, mines concept definitions and usage examples, and identifies relations between cross-artifact concepts in order to explain the links. It applies a post-processing step to prioritize the most likely acronyms and definitions and to eliminate non-relevant ones. We evaluate our approach using project artifacts from three different domains of interstellar telescopes, positive train control, and electronic health-care systems, and then report coverage, correctness, and potential utility of the generated definitions. We design and utilize an explanation interface which leverages concept definitions and relations to visualize and explain trace link rationales, and we report results from a user study that was conducted to evaluate the effectiveness of the explanation interface. Results show that the explanations presented in the interface helped non-experts to understand the underlying semantics of a trace link and improved their ability to vet the correctness of the link.
Multiscale map analysis in alluvial fan flood-prone areas
Creators: name: Scorpio, Vittoria
name: Santangelo, Nicoletta
name: Santo, Antonio
Publisher: name: Taylor & Francis
Year: 2016
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Plant Biology
subject: Computational Biology

description: Several case studies of geomorphological mapping at various scales in order to identify areas prone to alluvial fan flooding are presented in this paper. The selected areas are located in southern Italy and are representative of a geomorphic unit (foothills consisting of coalescent alluvial fans) found throughout the southern Apennines. The medium-scale approach represents the best tool to identify areas susceptible to flooding, using detailed geomorphological mapping of fan systems. It can be considered a preliminary analysis, which provides important information for large areas and identifies zones which need further investigation. Large-scale map analysis may be applied to a single fan and used to distinguish fan portions prone to different degrees of hazard exposure, thus providing accurate information for decision-makers who are called upon to plan hazard management. In both cases, analysis based on detailed geological and geomorphological field surveys is often coupled with remotely sensed data.
Britain 1660-1714: competing historiographies
Creators: name: Tarantino, Giovanni
Publisher: name: Cromohs - Cyber Review of Modern Historiography
Year: 2016

description: Writing about history is by its very nature a revisionist process. Nevertheless, in relation to Stuart and Hanoverian Britain the term came to be applied to specific historiographic paths of enquiry pursued in British, Canadian and American universities during the 1970s.
description: Cromohs - Cyber Review of Modern Historiography, 2006: Recent historiographical trends of the British Studies
Metal removal with two biochars made from municipal organic waste: adsorptive characterization and surface complexation modeling
Creators: name: Youchi Zhang
name: Xiaoda Tang
name: Wensui Luo
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Biological Sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Chemistry
subject: Earth and Environmental Sciences
subject: Engineering

description: The adsorptive characteristics of biochar produced from garden green waste (S-char) and a mixture of food waste and garden green waste (FS-char) were investigated. Adsorption of Cu2+, Zn2+, and Mn2+ onto the two biochars reached equilibrium within 48 hours. The metal adsorption was effectively described by the pseudo-second-order kinetic and Freundlich isotherm models which suggest heterogeneous chemisorption. The initial solution pH influenced adsorption of Zn2+ and Mn2+ but not of Cu2+. Simulation via a surface complexation model showed that the fraction of XOCu+ adsorbed onto biochar was increased with increasing pH until it reached the adsorption maximum at pH 8.5, while the endpoint for the maximum of XOMn+ was higher than pH 12.
Evidence, Imagination and Interdisciplinarity in the History of Early Modern Radicalism
Creators: name: Smith, Nigel
Publisher: name: Cromohs - Cyber Review of Modern Historiography
Year: 2016

description: In much that we might define as 'radical', a transformation in linguistic usages by people we might label 'radicals' can be observed across time in the past. This must not be seen as a transformation of language in and of itself (as Glenn Burgess says, there is no such thing as inherently radical language), but a matter of new potentials being seen in the interpretation of sacred or legal texts. It is not a monolithic 'radical tradition' to be sure but it does make for a series of connections through time of in which the transmission of ideas can be materially measured, perhaps through the medium of written or printed materials, perhaps through a church or a civic association. Sometimes there is discontinuity. The major lesson I would want to leave is that scholarship does not end with categorization, but with thinking of as many new ways as possible to discover the past, and of solving the problems of reaching new awareness through new approaches to evidence, be this reinterpretation of what we have, or finding entirely new evidence. The English Revolution should always be coming back to us in new ways.
description: Cromohs - Cyber Review of Modern Historiography, 2006: Recent historiographical trends of the British Studies