cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Formation of Large-Scale Semi-Organized Structures in Turbulent Convection
Creators: name: Elperin, T.
name: Kleeorin, N.
name: Rogachevskii, I.
name: Zilitinkevich, S.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: A new mean-field theory of turbulent convection is developed. This theory predicts the convective wind instability in a shear-free turbulent convection which causes formation of large-scale semi-organized fluid motions in the form of cells or rolls. Spatial characteristics of these motions, such as the minimum size of the growing perturbations and the size of perturbations with the maximum growth rate, are determined. This study predicts also the existence of the convective shear instability in a sheared turbulent convection which results in generation of convective shear waves with a nonzero hydrodynamic helicity. Increase of shear promotes excitation of the convective shear instability. Applications of the obtained results to the atmospheric turbulent convection and the laboratory experiments on turbulent convection are discussed. This theory can be applied also for the describing a mesogranular turbulent convection in astrophysics.
description: 16 pages, 10 figures, REVTEX4, PHYSICAL REVIEW E, v. 67, in press (2003)
Supercurrent-induced Majorana bound states in a planar geometry
Creators: name: Melo, André
name: Rubbert, Sebastian
name: Akhmerov, Anton R.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We propose a new setup for creating Majorana bound states in a two-dimensional electron gas Josephson junction. Our proposal relies exclusively on a supercurrent parallel to the junction as a mechanism of breaking time-reversal symmetry. We show that combined with spin-orbit coupling, supercurrents induce a Zeeman-like spin splitting. Further, we identify a new conserved quantity---charge-momentum parity---that prevents the opening of the topological gap by the supercurrent in a straight Josephson junction. We propose breaking this conservation law by adding a third superconductor, introducing a periodic potential, or making the junction zigzag-shaped. By comparing the topological phase diagrams and practical limitations of these systems we identify the zigzag-shaped junction as the most promising option.
title: The De-ubiquitylating Enzyme USP9X is Essential for Normal Neural Development in Mouse
Creators: name: Stegeman, Shane
Publisher: name: Griffith University
Year: 2012
Subjects: subject: De-ubiquitylating enzymes function
subject: Ubiquitin system
subject: Neuro-degenerative diseases
subject: Parkinson's disease
subject: Alzheimer's disease

description: The ubiquitin system is involved in almost all aspects of protein function and cell fate and is thought to play an important role during neural development. Defects within the ubiquitin system have been linked to a range of neuro-degenerative diseases including Parkinson’s and Alzheimer’s disease. De-ubiquitylating enzymes function downstream in the ubiquitin pathway having potential to act as the final arbiters of substrate fate and function. Several studies have shown that de-ubiquitylating enzymes play important roles in the growth, function and maintenance of neurons. The substrate-specific de-ubiquitylating enzyme USP9X is highly expressed in the developing central nervous system. In vitro analyses have shown that USP9X is highly expressed in neural stem cells while expression remains at lower levels in more differentiated neural cell types. As the human and mouse USP9X genes share a 97% nucleotide identity within the coding sequence, this study uses the mouse as a model to analyse the role of USP9X during mammalian neural development. Previous studies have shown that loss of USP9X in the pre-implantation mouse embryo results in pre-implantation lethality. To circumvent this early developmental stage and analyse USP9X function in the developing brain we utilized a conditional knockout strategy involving the Cre/loxP recombination system. Using the Cre/loxP recombination system we permanently disable USP9X via exon removal specifically in the CNS during embryonic development. Two models were utilised, the first disabling USP9X in the whole CNS using Nestin-Cre mediated deletion and the second disabling USP9X in the dorsal telencephalon (dorsal forebrain) using Emx1-Cre. Using these models, USP9X is targeted in neural stem cells / neural progenitor cells prior to differentiation. This approach presents the ability to examine the effects of loss of USP9X on neural progenitor cells as well as neuronal and glial cells that derive from these progenitors.
Additional file 3 of A study of knowledge, attitudes, and practices of primary care physicians toward anticoagulant therapy in patients with non-valvular atrial fibrillation in Shanghai, China
Creators: name: Ye, Shasha
name: Wang, Tianhao
name: Liu, Arthur
name: Yu, Ying
name: Pan, Zhigang
name: Gu, Jie
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Cell Biology
subject: Pharmacology
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Mental Health

description: Additional file 3.
M31 Globular Clusters in the HST Archive: I. Cluster Detection and Completeness
Creators: name: Barmby, P.
name: Huchra, J. P.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Globular clusters at the distance of M31 have apparent angular sizes of a few arcseconds. While many M31 GCs have been detected and studied from ground-based images, the high spatial resolution of HST allows much more robust detection and characterization of star cluster properties. We present the results of a search of 157 HST/WFPC2 images of M31: we found 82 previously-cataloged globular cluster candidates as well as 32 new globular cluster candidates and 20 open cluster candidates. We present images of the new candidates and photometry for all clusters. We assess existing cluster catalogs' completeness and use the results to estimate the total number of GCs in M31 as 460+/-70. The specific frequency is S_N = 1.2+/-0.2 and the mass specific frequency T = 2.4+/-0.4; these values are at the upper end of the range seen for spiral galaxies.
description: Accepted to AJ. 33 pages with 6 figures, plus 4 separate figures
Investigating The Piece-Wise Linearity And Benchmark Related To Koczy-Hirota Fuzzy Linear Interpolation
Creators: name: Alzubi, Maen
name: Kovács, Szilvester
Publisher: name: arXiv
Year: 2019
Subjects: subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: Fuzzy Rule Interpolation (FRI) reasoning methods have been introduced to address sparse fuzzy rule bases and reduce complexity. The first FRI method was the Koczy and Hirota (KH) proposed "Linear Interpolation". Besides, several conditions and criteria have been suggested for unifying the common requirements FRI methods have to satisfy. One of the most conditions is restricted the fuzzy set of the conclusion must preserve a Piece-Wise Linearity (PWL) if all antecedents and consequents of the fuzzy rules are preserving on PWL sets at α-cut levels. The KH FRI is one of FRI methods which cannot satisfy this condition. Therefore, the goal of this paper is to investigate equations and notations related to PWL property, which is aimed to highlight the problematic properties of the KH FRI method to prove its efficiency with PWL condition. In addition, this paper is focusing on constructing benchmark examples to be a baseline for testing other FRI methods against situations that are not satisfied with the linearity condition for KH FRI.
Raman sideband cooling of a single atom in an optical dipole trap: Towards theoretical optimum in a three-dimensional regime
Creators: name: Porozova, V. M.
name: Gerasimov, L. V.
name: Bobrov, I. B.
name: Straupe, S. S.
name: Kulik, S. P.
name: Kupriyanov, D. V.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: Atomic Physics (physics.atom-ph)
subject: FOS: Physical sciences

description: We clarify the optimal conditions for the protocol of Raman sideband cooling (RSC) of a single atom confined with a tightly focused far-off-resonant optical dipole trap (optical tweezers). The protocol ultimately pursues cooling to a three-dimensional ground state of the confining potential. We show that the RSC protocol has to fulfil a set of critical requirements for the parameters of cooling beams and the excitation geometry to be effective in a most general three-dimensional confguration and for an atom, having initial temperature between the recoil and the Doppler bounds. We perform a numerical simulation of the Raman passage for an example of an $^{85}$Rb atom taking into account the full level structure and all possible transition channels.
description: 16 pages, 6 figures; accepted for publication in Physical Review A
Additional file 1 of Persistent variations of blood DNA methylation associated with treatment exposures and risk for cardiometabolic outcomes in long-term survivors of childhood cancer in the St. Jude Lifetime Cohort
Creators: name: Song, Nan
name: Hsu, Chia-Wei
name: Pan, Haitao
name: Zheng, Yinan
name: Hou, Lifang
name: Sim, Jin-ah
name: Li, Zhenghong
name: Mulder, Heather
name: Easton, John
name: Walker, Emily
name: Neale, Geoffrey
name: Wilson, Carmen L.
name: Ness, Kirsten K.
name: Krull, Kevin R.
name: Srivastava, Deo Kumar
name: Yasui, Yutaka
name: Zhang, Jinghui
name: Hudson, Melissa M.
name: Robison, Leslie L.
name: Huang, I-Chan
name: Wang, Zhaoming
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Cancer
subject: Science Policy
subject: Virology

description: Additional file 1: Supplementary Methods. Bisulfite treatment, array hybridization, and scanning for DNA Methylation Profiling. Fig. S1. A flow diagram of the study population. Fig. S2. Q-Q plot showing the distribution of the observed versus expected association p-values. Fig. S3. Manhattan plot showing the treatment-specific association of DNA methylation. Fig. S4. The distributions of whole-array and significant treatment-associated CpG sites. Fig. S5. The distribution of beta-values for CpG mediators by groups of CHCs. Table S1. Pairwise correlations among eleven different treatments. Table S2. CpG hits associated with the specific treatment exposure (P<9x10-8). Table S3. 276 additional CpG hits associated with 9 paired combinations of treatments (P<9x10-8). Table S4. GO biological process annotations of specific treatment-associated CpG sites. Table S5. Association of treatment-associated methylation sites with CHCs (PFDR<0.05). Table S6. Multivariable associations of treatment exposures with CHCs (P<0.05). Table S7. Previously published associations of blood-based DNA methylation on CpG sites with health conditions.)
The spirit level: why equality is better for everyone (full text in Greek)
Creators: name: Papadakis, Nikos
name: Tzagarakis, Stelios
Publisher: name: Academia
Year: 2018
Subjects: Equity, Inequality

description: Presentation and analysis of Richard Wilkinson Kate Pichett book, with the title “The spirit level: why equality is better for everyone”
description: Academia, No 11 (2018)
Review of Summary Recommendations - Advancing Antiracism, Diversity, Equity, and Inclusion in STEMM Organizations
Creators: name: Mosbergen, Rowland
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 350502
subject: Employment equity and diversity

description: This is a short qualitative review of the recommendations provided in the summary of the report "Advancing Antiracism, Diversity, Equity, and Inclusion in STEMM Organizations".While an excellent breakdown and having some good recommendations, the two biggest gaps that were identified was the lack of an intersectional approach and a lack of practical suggestions to fix identified issues.
Drimys intermedia P. Parm.
Creators: name: Turner, I. M.
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Canellales
Winteraceae
Drimys
Drimys intermedia

description: 2. Drimys intermedia P.Parm.
Bulletin scientifique de la France et de la Belgique 27: 223, 224 (1896).
REMARKS
“ Drimys intermedia sp. n. ” occurs at three places in the text but there is no formal description, no mention of specimens and the name is not included in the species list (p. 336, 337) that serves as an index. The only characters highlighted by Parmentier for Drimys intermedia are that the stem contains vessels, the leaves have stomata in the adaxial epidermis and the presence of periderm in the stem tissues (this last not being diagnostic). Drimys muelleri is described as having wood with vessels and stomata on both surfaces of the leaf lamina. One supposes that Parmentier used two names for the same species, presumably changing the epithet from “intermedia” to “muelleri” but failing to correct the mistake on two pages. Drimys intermedia is not a nomen nudum as indicated by Guymer (2007), but Parmentier’s description might be deemed inadequate to validate the name. It seems best to leave it as an uncertain name at present.
description: Published as part of Turner, I. M., 2012, The taxa described by Paul Évariste Parmentier in Histoire des Magnoliacées, pp. 237-249 in Adansonia (3) (3) 34 (2) on page 239, DOI: 10.5252/a2012n2a3, http://zenodo.org/record/5205948
Additional file 3: of Bibliometric analysis of cardiometabolic disorders studies involving NO2, PM2.5 and noise exposure
Creators: name: Yu-Kai Huang
name: Hanneke, Rosie
name: Jones, Rachael
Publisher: name: figshare
Year: 2019
Subjects: subject: Cell Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Table S4. The precision test. (PDF 252 kb)
Decay modes of the scalar exotic meson $T_{bs;\overline{u}\overline{d}}^{-}$
Creators: name: Agaev, S. S.
name: Azizi, K.
name: Sundu, H.
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: We investigate the semileptonic decay of the scalar tetraquark $T_{bs; \overline{u}\overline{d}}^{-}$ to final state $T_{cs;\overline{u}\overline{d} }^{0} l \overlineν_l$, which proceeds due to the weak transition $b \to c l \overlineν_l$. For these purposes, we calculate the spectroscopic parameters of the final-state scalar tetraquark $T_{cs;\overline{u}\overline{ d}}^{0}$. In calculations we use the QCD sum rule method by taking into account the quark, gluon, and mixed condensates up to dimension 10. The mass of the $T_{cs;\overline{u}\overline{d}}^{0}$ obtained in the present work $( 2878 \pm 128 )~\mathrm{MeV}$ indicates that it is unstable against the strong interactions, and can decay to the mesons $D^{0}\overline{K}^{0}$ and $D^{+}K^{-}$. Partial widths of these $S$-wave modes as well as the full width of the tetraquark $T_{cs;\overline{u}\overline{d}}^{0}$ are found by means of the QCD light-cone sum rule method and technical tools of the soft-meson approximation. The partial widths of the main semileptonic processes $T_{bs;\overline{u}\overline{d}}^{-} \to T_{cs;\overline{u} \overline{d}}^{0}l\overlineν_l$, $l=e, μ$, and $τ$ are computed by employing the weak form factors $G_{1}(q^2)$ and $G_{2}(q^2)$, which are extracted from the QCD three-point sum rules. We also trace back the weak transformations of the stable tetraquark $T_{bb;\overline{u}\overline{d} }^{-} $ to conventional mesons. The obtained results for the full width $ Γ_{\mathrm{full}}=(3.28\pm 0.60) \times 10^{-10}~\mathrm{MeV} $ and mean lifetime $τ=2.01_{-0.31}^{+0.44}~\mathrm{ps}$ of $T_{bs;\overline{u} \overline{d}}^{-}$, as well as predictions for decay channels of the tetraquark $T_{bb;\overline{u}\overline{d}}^{-}$ can be used in experimental studies of these exotic states. \end{abstract}
description: 9 Pages, 6 Figures and 2 Tables
Additional file 2: of C3aR signaling and gliosis in response to neurodevelopmental damage in the cerebellum
Creators: name: Young, Kevin
name: Keqin Yan
name: Picketts, David
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 60506 Virology

description: Primer sequences used for quantitative RT-PCR. (DOCX 14 kb)
Trisetopsis lachnantha Roser & A. Wolk, Schlechtendalia
Creators: name: Prunera-Olivé, Joan
name: Vorontsova, Maria S.
name: Williams, Emma V.
name: Mollel, Neduvoto P.
name: Hemp, Andreas
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Poales
Poaceae
Trisetopsis
Trisetopsis lachnantha

description: Trisetopsis lachnantha (Hochst. ex A.Rich.) Röser & A.Wölk, Schlechtendalia 25: 59 (2013).
 Distribution: Bioko, Ethiopia to E. Trop. Africa
 Specimens: MOSHI Lemosho Glades, Bjornstad, A. 313a (K); Lemosho Glades, Peterson, P. 24345 (BC, K, US); Usseri, Haarer, A.E. 1691 (K).
description: Published as part of Prunera-Olivé, Joan, Vorontsova, Maria S., Williams, Emma V., Mollel, Neduvoto P. & Hemp, Andreas, 2021, Checklist of Kilimanjaro grasses shows that both plot and herbarium methods are necessary to record diversity, pp. 201-244 in Phytotaxa 501 (2) on page 242, DOI: 10.11646/phytotaxa.501.2.1, http://zenodo.org/record/5424816
Additional file 1 of A study of knowledge, attitudes, and practices of primary care physicians toward anticoagulant therapy in patients with non-valvular atrial fibrillation in Shanghai, China
Creators: name: Ye, Shasha
name: Wang, Tianhao
name: Liu, Arthur
name: Yu, Ying
name: Pan, Zhigang
name: Gu, Jie
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Cell Biology
subject: Pharmacology
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Mental Health

description: Additional file 1 Table S1 Attitude item score of community PCPs on anticoagulant therapy for NVAF patients (n = 462).
Thermocoris rivalis subsp. rivalis rivalis (Horvath 1894
Creators: name: Linnavuori, Rauno E.
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Miridae
Thermocoris
Thermocoris rivalis
Thermocoris rivalis rivalis (horváth, 1894)

description: Thermocoris rivalis rivalis (Horváth, 1894)
 Material examined. ARDABIL: Khemes, 2 specimens, 7.-9.vii.2002. TEHRAN: Kandovan, many specimens, 3.- 4.vii.1995.
 Comments. In mountain meadows. Recorded from Alkanna. Known from Turkey, Caucasus and Iraq. New for Iran.
description: Published as part of Linnavuori, Rauno E., 2007, Studies on the Miridae (Heteroptera) of Gilan and the adjacent provinces in northern Iran. II. List of species, pp. 17-56 in Acta Entomologica Musei Nationalis Pragae 47 on page 54, DOI: 10.5281/zenodo.5328235
Radio Lobe Dynamics and the Environment of Microquasars
Creators: name: Heinz, S.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We argue that, when compared to AGNs in dynamical terms, microquasars are found in low density, low pressure environments. Using a simple analytic model, we discuss radio lobe dynamics and emission. Dynamical considerations for GRS 1915+105 and GRO J1655-40 show that they are located in ISM densities well below the canonical n_ISM ~ 1 cm^{-3} unless the jets are unusually narrow or much more powerful than currently believed.
description: 4 pages, accepted for publication in A&A Letters
Chemodynamical evolution of interacting galaxies
Creators: name: Combes, F.
name: Melchior, A. L.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We have undertaken numerical simulations of galaxy interactions and mergers, coupling the dynamics with the star formation history and the chemical evolution. The self-gravity of stars and gas is taken into account through a tree-code algorithm, the gas hydrodynamics through SPH, and an empirical law such as a local Schmidt law is used to compute star formation. The gas and stellar metallicity is computed at each position, according to assumed yields, and the dust amount is monitored. At each step the spectra of galaxies are computed, according to simple radiative transfer and dust models. Initial conditions for these simulations will be taken from a large-scale cosmological frame-work. The aim is to build a statistically significant library of merger histories. The first results of the project will be discussed, in particular on predictions about galaxy surveys at high redshift.
description: 4 pages, 3 figures, to be published in "The Evolution of Galaxies. II. Basic Building Blocks", ed. M. Sauvage et al., Kluwer
Role of Future Lepton Colliders for Fermionic Z-portal Dark Matter
Creators: name: Ghosh, Dilip Kumar
name: Katayose, Taisuke
name: Matsumoto, Shigeki
name: Saha, Ipsita
name: Shirai, Satoshi
name: Tanabe, Tomohiko
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: The fermionic Z-portal dark matter model suffers from severe constraints from direct detection experiments. However, a narrow parameter space around the Z-funnel region is beyond the reach due to the resonance annihilation. In this paper, we provide an intriguing collider prospect for probing the Z-funnel dark matter mass range at the future lepton colliders including the beam polarization feature. We have done a comprehensive analysis for mono-photon signal at the colliders for such a dark matter. A realistic estimation for the 90% C.L. constraints with the systematic beam uncertainties has also been provided.
description: version 2, title modified, some comments added. Published version
Trisetopsis milanjiana Roser & A. Wolk, Schlechtendalia
Creators: name: Prunera-Olivé, Joan
name: Vorontsova, Maria S.
name: Williams, Emma V.
name: Mollel, Neduvoto P.
name: Hemp, Andreas
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Poales
Poaceae
Trisetopsis
Trisetopsis milanjiana

description: Trisetopsis milanjiana (Rendle) Röser & A.Wölk, Schlechtendalia 25: 59 (2013).
 Distribution: Ethiopia to Malawi, Madagascar
 Specimens: MOSHI Horombo Hut (= Peters Hut), Morton, J.K. EA9 (K); Mweka Camp, Peterson, P. 24388 (BC, K, US); Weru Weru River, Hemp, A. 3789 (NHT, UBT); Weru Weru River, Hemp, A. 3799 (NHT, UBT); Weru Weru River, Hemp, A. 4567 (UBT).
description: Published as part of Prunera-Olivé, Joan, Vorontsova, Maria S., Williams, Emma V., Mollel, Neduvoto P. & Hemp, Andreas, 2021, Checklist of Kilimanjaro grasses shows that both plot and herbarium methods are necessary to record diversity, pp. 201-244 in Phytotaxa 501 (2) on page 242, DOI: 10.11646/phytotaxa.501.2.1, http://zenodo.org/record/5424816
Pathogenicity factors of Phytophthora melonis revealed by comparative proteomics
Creators: name: Ahmad, Aqeel
name: Akram, Waheed
name: Wang, Rui
name: Shahzadi, Iqra
name: Umer, Muhammad
name: Yasin, Nasim Ahmad
name: Wu, Tingquan
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology
subject: Computational Biology

description: Deciphering the transcriptional activities of pathogenicity genes is critical to understand pathogenesis mechanisms of Phytophthora melonis, a devastating pathogen of cucurbits. In this study, we have performed comparative proteomics among P. melonis mutants to evaluate the interacting pathogenicity proteins. Structural characterization of all detected proteins discovered the physicochemical factors behind their pathogenic behavior. Results revealed that gamma radiations have an extreme potential to mutate P. melonis spores, and can be a safe alternative of chemical mutagens. P. melonis is accomplished with seventy-three differentially expressed proteins among which, seven proteins were ranked as strong pathogenicity factors, i.e. Q9AT01 (Elicitin), D0MX11 (Oligopeptidase A, putative), D0NB60 (Secreted RXLR effector peptide protein, putative), D0NIK4 (IpiB3-like protein), D0NIZ1 (Carboxypeptidase), H3GZF4 and H3GZF6. The Ramachandran plot determined the positions of secondary structures (α helix and β sheets) in the 3D structures of pathogenicity proteins. Furthermore, the glycine residues analysis highlighted that six out of seven proteins were functionally and structurally more stable than D0NIK4 protein. The study concluded that the pathogenic proteins must have negative ϕ angles greater than 63°, and ψ angles ≥80° for their proper functioning. This study establishes functional connections between pathogenicity genes and the process of disease establishment.
On the knee in the energy spectrum of cosmic rays
Creators: name: Hoerandel, J. R.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The knee in the all-particle energy spectrum is scrutinized with a phenomenological model, named poly-gonato model, linking results from direct and indirect measurements. For this purpose, recent results from direct and indirect measurements of cosmic rays in the energy range from 10 GeV up to 1 EeV are examined. The energy spectra of individual elements, as obtained by direct observations, are extrapolated to high energies using power laws and compared to all-particle spectra from air shower measurements. A cut-off for each element proportional to its charge Z is assumed. The model describes the knee in the all-particle energy spectrum as a result of subsequent cut-offs for individual elements, starting with the proton component at 4.5 PeV, and the second change of the spectral index around 0.4 EeV as due to the end of stable elements (Z=92). The mass composition, extrapolated from direct measurements to high energies, using the poly-gonato model, is compatible with results from air shower experiments measuring the electromagnetic, muonic, and hadronic components. But it disagrees with the mass composition derived from X_max measurements using Cerenkov and fluorescence light detectors.
description: 30 pages, 21 figures, 9 tables, accepted by Astroparticle Physics
Tuponia (Tuponia) persica Wagner 1957
Creators: name: Linnavuori, Rauno E.
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Miridae
Tuponia
Tuponia persica

description: Tuponia (Tuponia) persica Wagner, 1957
 Material examined. Several specimens: GILAN: Dasht-e-Veel, 10.-12.v.2001; Parudbar, 25.-26.vi.2004. ZANJAN: Abbar, 12.-14.v.2001; Gilvan, 29.ix.2000; Mamalan, 12.-14.ix.2000.
 Comments. On Tamarix. Eremian, extending from Yemen and Saudi Arabia to Middle Asia.
description: Published as part of Linnavuori, Rauno E., 2007, Studies on the Miridae (Heteroptera) of Gilan and the adjacent provinces in northern Iran. II. List of species, pp. 17-56 in Acta Entomologica Musei Nationalis Pragae 47 on page 55, DOI: 10.5281/zenodo.5328235
Fairea - FSE2021
Creators: name: Hort, Max
Publisher: name: figshare
Year: 2021
Subjects: subject: 80309 Software Engineering
subject: FOS: Computer and information sciences

description: This on-line appendix is supplementary to the paper entitled "Fairea: A Model Behaviour Mutation Approach to Benchmarking Bias Mitigation Methods", which has been accepted at FSE'21. It contains the data used in the study, raw results, Python code for the proposed approach, and scripts to replicate our experiments.
Trisetopsis umbrosa Roser & A. Wolk, Schlechtendalia
Creators: name: Prunera-Olivé, Joan
name: Vorontsova, Maria S.
name: Williams, Emma V.
name: Mollel, Neduvoto P.
name: Hemp, Andreas
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Poales
Poaceae
Trisetopsis
Trisetopsis umbrosa

description: Trisetopsis umbrosa (Hochst. ex Steud.) Röser & A.Wölk, Schlechtendalia 25: 60 (2013).
 Distribution: Ethiopia to E. Trop. Africa
 Specimens: MOSHI Horombo Hut (= Peters Hut), Hitchcock, A.S. 24639 (K); Horombo Hut (= Peters Hut), Pichi Sermolli, R.E.G. 5098 (K); Kilimanjaro Timbers, Grimshaw, J.M. 94657 (K).
description: Published as part of Prunera-Olivé, Joan, Vorontsova, Maria S., Williams, Emma V., Mollel, Neduvoto P. & Hemp, Andreas, 2021, Checklist of Kilimanjaro grasses shows that both plot and herbarium methods are necessary to record diversity, pp. 201-244 in Phytotaxa 501 (2) on page 242, DOI: 10.11646/phytotaxa.501.2.1, http://zenodo.org/record/5424816
Tuponia (Tuponia) dehshorana Linnavuori 1997
Creators: name: Linnavuori, Rauno E.
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Miridae
Tuponia
Tuponia dehshorana

description: Tuponia (Tuponia) dehshorana Linnavuori, 1997
 Material examined. Several specimens: ZANJAN: Abbar, 12.-14.v.2001. TEHRAN: Asara, 13.vii.2002; Gachsar, 15.vii.2002. KOHGILUYEH & BOYERAHMAD: Samirun, 11.-12.vi.2003.
 Comments. On Tamarix. Endemic to Iran.
description: Published as part of Linnavuori, Rauno E., 2007, Studies on the Miridae (Heteroptera) of Gilan and the adjacent provinces in northern Iran. II. List of species, pp. 17-56 in Acta Entomologica Musei Nationalis Pragae 47 on page 54, DOI: 10.5281/zenodo.5328235
Anisotropic magnetocaloric effect in Fe$_{3-x}$GeTe$_2$
Creators: name: Liu, Yu
name: Li, Jun
name: Tao, Jing
name: Zhu, Yimei
name: Petrovic, C.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We present a comprehensive study on anisotropic magnetocaloric porperties of the van der Waals weak-itinerant ferromagnet Fe$_{3-x}$GeTe$_2$ that features gate-tunable room-temperature ferromagnetism in few-layer device. Intrinsic magnetocrystalline anisotropy is observed to be temperature-dependent and most likely favors the long-range magnetic order in thin Fe$_{3-x}$GeTe$_2$ crsytal. The magnetic entropy change $-ΔS_M$ also reveals an anisotropic characteristic between $H // ab$ and $H // c$, which could be well scaled into a universal curve. The peak value $-ΔS_M^{max}$ of 1.20 J kg$^{-1}$ K$^{-1}$ and the corresponding adiabatic temperature change $ΔT_{ad}$ of 0.66 K are deduced from heat capacity with out-of-plane field change of 5 T. By fitting of the field-dependent parameters of $-ΔS_M^{max}$ and the relative cooling power RCP, it gives $-ΔS_M^{max} \propto H^n$ with $n = 0.603(6)$ and $RCP \propto H^m$ with $m = 1.20(1)$ when $H // c$. Given the high and tunable $T_c$, Fe$_{3-x}$GeTe$_2$ crystals are of interest for fabricating the heterostructure-based spintronics device.
Gravity's smoking gun?
Creators: name: Gaztanaga, E.
name: Juszkiewicz, R.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present a new constraint on the biased galaxy formation picture. Gravitational instability theory predicts that the two-point mass density correlation function, ξ(r), has an inflection point at the separation r=r_0, corresponding to the boundary between the linear and nonlinear regime of clustering, ξ= 1. We show how this feature can be used to constrain the square of the biasing parameter, b^2 = ξ_g / ξon scales r = r_0, where ξ_g is the galaxy-galaxy correlation function, allowed to differ from ξ. We apply our method to real data: the ξ_g(r), estimated from the APM galaxy survey. Our results suggest that the APM galaxies trace the mass at separations r > 5 Mpc/h, where h is the Hubble constant in units of 100 km/s Mpc. The present results agree with earlier studies, based on comparing higher order correlations in the APM with weakly non-linear perturbation theory. Both approaches constrain the "b" factor to be within 20% of unity. If the existence of the feature we identified in the APM ξ_g(r) -- the inflection point near ξ_g = 1 -- is confirmed by more accurate surveys, we may have discovered gravity's smoking gun: the long awaited ``shoulder'' in ξ, predicted by Gott and Rees 25 years ago.
description: 4 pages, 2 figures, minor changes and references added, matches version published in ApJ letters
Statistics effects in extremal black holes ensemble
Creators: name: Gavrilik, A. M.
name: Nazarenko, A. V.
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We consider the grand canonical ensemble of the static and extremal black holes, when the equivalence of the electric charge and mass of individual black hole is postulated. Assuming uniform distribution of black holes in space, we are finding the effective mass of test particle and mean time dilation at the admissible points of space, taking into account the gravitational action of surrounding black holes. Having specified the statistics that governs extremal black holes, we study its effect on those quantities. Here, the role of statistics is to assign a statistical weight to the configurations of certain fixed number of black holes. We borrow these weights from Bose-Einstein, Fermi-Dirac, classical and infinite statistics. Using mean field approximation, the aforementioned characteristics are calculated and visualized, what permits us to draw the conclusions on visible effect of each statistics.
description: v2: 15 pages, 3 figures; refs., text and explanations added to match reviewers' suggestions, accepted for publication by Int. J. Mod. Phys. A
title: Feature Selection for Hybrid Data Sets and Feature Extraction for Non-Hybrid Data Sets
Creators: name: Rezaei Boroujeni, Forough
Publisher: name: Griffith University
Year: 2021
Subjects: subject: Feature selection
subject: inductive supervised learning

description: Feature selection in terms of inductive supervised learning is a process of selecting a subset of features which are relevant to the target concept and removing irrelevant features. The minimally sized subset of features leads to a negligible degradation or even improvement in classi cation performance. Although, in real-world applications, data sets usually come with a mixture of both numerical and categorical variables (called hybrid data sets), little effort has been devoted to designing feature selection methods which can handle both numerical and categorical data simultaneously. An exception is the Recursive Feature Elimination under the clinical kernel function which is an embedded feature selection method. However, it suffers from low classi cation performance. Feature extraction algorithms transform or project the original data onto a smaller dataset which is more compact and of stronger discriminating power. Fisher's linear discriminant analysis is a widely accepted feature extraction method, which aims to find a transformation matrix to convert feature space to a smaller space by maximising the between-class scatter matrix while minimising the within-class scatter matrix. Although the fast and easy process of fi nding the transformation matrix has made this method attractive, overemphasizing the large class distances makes the criterion of this method suboptimal. In this case, the close class pairs tend to overlap in the subspace. Despite different weighting methods having been developed to overcome this problem, there is still a room to improve this issue. In the area of feature selection, we propose several embedded feature selection methods which are capable of dealing with hybrid balanced, and hybrid imbalanced data sets. In the experimental evaluation on ve UCI Machine Learning Repository data sets, we demonstrate the dominance and effectiveness of the proposed methods in terms of dimensionality reduction and classi cation performance. In the area of feature extraction, we propose a weighted trace ratio by maximising the harmonic mean of the multiple objective reciprocals. To further improve the performance, we enforce the `2;1-norm to the developed objective function. Additionally, we propose an iterative algorithm to optimise this objective function. The proposed method avoids the domination problem of the largest objective, and guarantees that no objectives will be too small. This method can be more bene cial if the number of classes is large. The extensive experiments on different datasets show the effectiveness of our proposed method when compared with four state-of-the-art methods.
Additional file 1: of C3aR signaling and gliosis in response to neurodevelopmental damage in the cerebellum
Creators: name: Young, Kevin
name: Keqin Yan
name: Picketts, David
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: SNP analysis of different mouse lines used in this study. (DOCX 14 kb)
The Redshift of the Optical Transient Associated with GRB 010222
Creators: name: Jha, Saurabh
name: Pahre, Michael A.
name: Garnavich, Peter M.
name: Calkins, Michael L.
name: Kilgard, Roy E.
name: Matheson, Thomas
name: McDowell, Jonathan C.
name: Roll, John B.
name: Stanek, Krzysztof Z.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The gamma-ray burst (GRB) 010222 is the brightest GRB detected to date by the BeppoSAX satellite. Prompt identification of the associated optical transient (OT) allowed for spectroscopy with the Tillinghast 1.5m telescope at F. L. Whipple Observatory while the source was still relatively bright (R ~ 18.6 mag), within five hours of the burst. The OT shows a blue continuum with many superimposed absorption features corresponding to metal lines at z = 1.477, 1.157, and possibly also at 0.928. The redshift of GRB 010222 is therefore unambiguously placed at z >= 1.477. The high number of Mg II absorbers and especially the large equivalent widths of the Mg II, Mg I, and Fe II absorption lines in the z = 1.477 system further argue either for a very small impact parameter or that the z = 1.477 system is the GRB host galaxy itself. The spectral index of the OT is relatively steep, beta = 0.89 +/- 0.03, and this cannot be caused by dust with a standard Galactic extinction law in the z = 1.477 absorption system. This spectroscopic identification of the redshift of GRB 010222 shows that prompt and well-coordinated followup of bright GRBs can be successful even with telescopes of modest aperture.
description: 12 pages, 3 figures; ApJ Letters accepted version, only minor changes
Nanoscale domains in ionic liquids: A statistical mechanics definition for molecular dynamics studies
Creators: name: Jabes, B. Shadrack
name: Site, Luigi Delle
Publisher: name: arXiv
Year: 2019
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: One of the many open questions concerning Ionic Liquids (ILs) is the existence of nanoscale supramolecular domains which characterize the bulk. The hypothesis of their existence does not meet a general consensus since their definition seems to be based on ad hoc arbitrary criteria rather than on general and solid first principles of physics. In this work, we propose a suitable definition of supramolecular domains based on first principles of statistical mechanics. Such principles can be realized through the application of a recently developed computational tool which employs adaptive molecular resolution. The method can identify the smallest region of a liquid for which the atomistic details are strictly required, while the exterior plays the role of a generic structureless thermodynamic reservoir. We consider four different imidazolium-based ILs and show that indeed one can quantitatively represent the liquid as a collection of atomistically self-contained nanodroplets embedded in a generic thermodynamic bath. Such nanodroplets express a characteristic length scale for heterogeneity in ILs.
description: 9 pages
Plagiognathus (Zophocnemis) bicolor
Creators: name: Linnavuori, Rauno E.
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Miridae
Plagiognathus
Plagiognathus bicolor

description: Plagiognathus (Zophocnemis) bicolor (Jakovlev, 1880)
 Material examined. ARDABIL: Khemes – Kolur, 2 specimens, 27.-29.vi.2002; Majareh – Khalkhal, 2 specimens, 22.vii.1996.
 Comments. In mountain steppes. Known from South Russia, Ukraine, Caucasus, and Kazakhstan. New for Iran.
description: Published as part of Linnavuori, Rauno E., 2007, Studies on the Miridae (Heteroptera) of Gilan and the adjacent provinces in northern Iran. II. List of species, pp. 17-56 in Acta Entomologica Musei Nationalis Pragae 47 on page 50, DOI: 10.5281/zenodo.5328235
Remnants of Sagittarius Dwarf Spheroidal Galaxy around the young globular cluster Palomar 12
Creators: name: Martinez-Delgado, D.
name: Zinn, R.
name: Carrera, R.
name: Gallart, C.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Photometry of a large field around the young globular cluster Palomar 12 has revealed the main-sequence of a low surface-brightness stellar system. This main-sequence is indicative of a stellar population that varies significantly in metallicity and/or age, but in the mean is more metal poor than Pal 12. Under different assumptions for the properties of this population, we find distances from the Sun in the range 17-24 kpc, which encompasses the distance to Pal 12, $19.0\pm0.9$ kpc. The stellar system is also detected in a field 2$\arcdeg$ North of Pal 12, which indicates it has a minimum diameter of $\sim0.9$ kpc. The orbit of Pal 12 (Dinescu et al. 2000), the color-magnitude diagram of the stellar system, their positions on the sky, and their distances suggest that they are debris from the tidal disruption of the Sgr dSph galaxy. We discuss briefly the implications for the evolution of Sgr and the Galactic halo.
description: 16 pages, 2 figures, accepted for ApJ Letters. Some importante changes after revision, including a new figure
Tuponia (Tuponia) elegans
Creators: name: Linnavuori, Rauno E.
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Miridae
Tuponia
Tuponia elegans

description: Tuponia (Tuponia) elegans (Jakovlev, 1881)
 Material examined. Several specimens: GILAN: Ganjeh, 14.v.-13.vi.1995; Lowshan, 23.v.1995, 8.vii.1996; Manjil, 8.-10.v.2001; Parudbar, 25.-26.vi.2004. ZANJAN: Gilvan, 29.ix.2000; Mamalan, 12.-14.v.2001, 4.-5.vi.2002. TEHRAN: Karadj Valley 52 km N of Karadj, 1 specimen, 26.vii.1972, D. Gerling lgt.
 Comments. On Tamarix. Irano-Turanian.
description: Published as part of Linnavuori, Rauno E., 2007, Studies on the Miridae (Heteroptera) of Gilan and the adjacent provinces in northern Iran. II. List of species, pp. 17-56 in Acta Entomologica Musei Nationalis Pragae 47 on page 54, DOI: 10.5281/zenodo.5328235
The prime index function
Creators: name: Agama, Theophilus
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Mathematics (math.GM)
subject: FOS: Mathematics

description: In this paper we introduce the prime index function \begin{align}ι(n)=(-1)^{π(n)},\nonumber \end{align} where $π(n)$ is the prime counting function. We study some elementary properties and theories associated with the partial sums of this function given by\begin{align}ξ(x):=\sum \limits_{n\leq x}ι(n).\nonumber \end{align}We show that a prime $p>2$ is a twin prime if and only if $ξ(p)=ξ(p+2)$. We also relate the prime index function to Cramer's conjecture by showing that \begin{align}|ξ(p_{n+1})-ξ(p_n)|+2=p_{n+1}-p_n.\nonumber \end{align}That is, Cramer's conjecture can be stated as \begin{align}ξ(p_{n+1})-ξ(p_n)\ll (\log p_n)^2.\nonumber \end{align}This reduces the problem to obtaining very good estimates of the second prime index function.
description: 9 pages; two new lemmas have been included; some typos corrected
Spontaneous CPT asymmetry of the Universe
Creators: name: Andrianov, A. A.
name: Giacconi, P.
name: Soldati, R.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The extended QED with renormalizable interactions breaking the Lorentz and CPT symmetry is considered and the phenomenological consequences of such a symmetry breaking are illuminated in view of recent discussion of large scale anisotropy of the Universe. Other physical effects in QED with CPT violation are examined, in particular, mass splitting between electrons of different helicities and decay of very high energetic electrons into lower energy electrons and positrons.
description: 5 pages,Latex, Talk at V Int. Conf. on Cosmoparticle Physics COSMION-2001 (Moscow-St.Petersburg, May 2001)
Floquet engineering to exotic topological phases in systems of cold atoms
Creators: name: Liu, Hui
name: Xiong, Tian-Shi
name: Zhang, Wei
name: An, Jun-Hong
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Topological phases with a widely tunable number of edge modes have been extensively studied as a typical class of exotic states of matter with potentially important applications. Although several models have been shown to support such phases, they are not easy to realize in solid-state systems due to the complexity of various intervening factors. Inspired by the realization of synthetic spin-orbit coupling in a cold-atom system [Z. Wu {\it et al.}, Science \textbf{354}, 83 (2016)], we propose a periodic quenching scheme to realize large-topological-number phases with multiple edge modes in optical lattices. Via introducing the periodic quenching to the Raman lattice, it is found that a large number of edge modes can be induced in a controllable manner from the static topologically trivial system. Our result provides an experimentally accessible method to artificially synthesize and manipulate exotic topological phases with large topological numbers and multiple edge modes.
Tuponia (Tuponia) subaltera Drapolyuk 1980
Creators: name: Linnavuori, Rauno E.
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Miridae
Tuponia
Tuponia subaltera

description: Tuponia (Tuponia) subaltera Drapolyuk, 1980
 Material examined. GILAN: Ganjeh, 2 specimens, 14.v.-13.vi.1995; Lowshan, 4 specimens, 23.v.1995; Tutkabon – Rudbar, 1 specimen, 6.-8.vi.2002. ZANJAN: Abbar, 3 specimens, 12.-14.v.2001; Mamalan, 4 specimens, 12.- 14.v.2001.
 Comments. On Tamarix. Known from the Khorasan province in Iran and Turkmenistan.
description: Published as part of Linnavuori, Rauno E., 2007, Studies on the Miridae (Heteroptera) of Gilan and the adjacent provinces in northern Iran. II. List of species, pp. 17-56 in Acta Entomologica Musei Nationalis Pragae 47 on page 55, DOI: 10.5281/zenodo.5328235