cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Langduoa dianae Tedersoo 2024, sp. nov.
Creators: name: Tedersoo, Leho
name: Magurno, Franco
name: Alkahtani, Saad
name: Mikryukov, Vladimir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Tracheophyta
Magnoliopsida
Langduoales
Langduoaceae
Langduoa
Langduoa dianae

description: Langduoa dianae Tedersoo sp. nov.
Diagnosis.
Separation from other species of Langduoa based on the ITS region (positions 87–106 actgagccttgcagcaacaatctccccttt; no mismatch allowed) and LSU (positions 617–636 ccctctcggggggctgggga; no mismatch allowed) as indicated in Fig. 8.
Type.
Soil eDNA sample TUE 128827 (holotype); eDNA sequence: EUK 1107335 (lectotype); montane grassland in Langduo, Tibet, 29.4 ° N, 94.4 ° E.
Description.
Other sequences: EUK 1602727 and EUK 1602728 (both from GSMc plot G 5906, stadium grassland soil in Karksi-Nuia, Estonia, 58.10088 ° N, 25.55959 ° E); EUK 1604031 (GSMc plot G 4185, Picea - Pinus forest soil in Ristipalo, Estonia, 58.10241 ° N, 27.47874 ° E); and EUK 1604032 (GSMc plot G 4766, soil of coppiced garden dominated by Fraxinus and Ulmus in Ruudiküla, Estonia, 58.33630 ° N, 25.78084 ° E).
Etymology.
Langduo (Tibetan) refers to type locality; and Diana (Lithuanian) refers to the first name of Diana Marčiulynienė who was the first to record this genus.
Notes.
Found from grassland soils in Estonia and Tibet, with ITS and LSU sequences differing up to 0.2 %. So far, not found from the roots.
description: Published as part of Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir, 2024, Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes), pp. 249-271 in MycoKeys 107 on pages 249-271, DOI: 10.3897/mycokeys.107.125549
MOESM3 of Geographical distributions of African malaria vector sibling species and evidence for insecticide resistance
Creators: name: Wiebe, Antoinette
name: Longbottom, Joshua
name: Gleave, Katherine
name: Shearer, Freya
name: Sinka, Marianne
name: N. Massey
name: Cameron, Ewan
name: Bhatt, Samir
name: Gething, Peter
name: Hemingway, Janet
name: Smith, David
name: Coleman, Michael
name: Moyes, Catherine
Publisher: name: Figshare
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Additional file 3. Maps showing the spatial distribution of the data that went into the model.
Saliva sampling method influences oral microbiome composition and taxa distribution associated with oral diseases
Creators: name: Roca C.
name: Deanhardt B.K
name: Chi D.L
name: Wang J.R
name: Wolfgang M.C
name: Alkhateeb A.A.
name: Macdonald J.K
Publisher: name: Public Library of Science
Year: 2024

description: Saliva is a readily accessible and inexpensive biological specimen that enables investigation of the oral microbiome, which can serve as a biomarker of oral and systemic health. There are two routine approaches to collect saliva, stimulated and unstimulated; however, there is no consensus on how sampling method influences oral microbiome metrics. In this study, we analyzed paired saliva samples (unstimulated and stimulated) from 88 individuals, aged 7-18 years. Using 16S rRNA gene sequencing, we investigated the differences in bacterial microbiome composition between sample types and determined how sampling method affects the distribution of taxa associated with untreated dental caries and gingivitis. Our analyses indicated significant differences in microbiome composition between the sample types. Both sampling methods were able to detect significant differences in microbiome composition between healthy subjects and subjects with untreated caries. However, only stimulated saliva revealed a significant association between microbiome diversity and composition in individuals with diagnosed gingivitis. Furthermore, taxa previously associated with dental caries and gingivitis were preferentially enriched in individuals with each respective disease only in stimulated saliva. Our study suggests that stimulated saliva provides a more nuanced readout of microbiome composition and taxa distribution associated with untreated dental caries and gingivitis compared to unstimulated saliva.
Additional file 3: of
                     Loa loa vectors Chrysops spp.: perspectives on research, distribution, bionomics, and implications for elimination of lymphatic filariasis and onchocerciasis
Creators: name: Kelly-Hope, Louise
name: Rossely Paulo
name: Thomas, Brent
name: Brito, Miguel
name: Unnasch, Thomas
name: Molyneux, David
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: FOS: Biological sciences
subject: Computational Biology

description: Historical maps of Chrysops distributions (PDF 674 kb)
Lehetuales Tedersoo 2024, ord. nov.
Creators: name: Tedersoo, Leho
name: Magurno, Franco
name: Alkahtani, Saad
name: Mikryukov, Vladimir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Lehetuales

description: Lehetuales Tedersoo ord. nov.
Type family.
Lehetuaceae Tedersoo.
Description.
Covers the monophyletic group in Endogonomycetes (Fig. 2). Phylogenetically delimited as the least inclusive clade covering sequence accessions EUK 1603180, EUK 1602375 and EUK 1602377 (Suppl. material 3).
Notes.
Recognised based on eDNA sequences only. Currently includes Lehetuaceae.
description: Published as part of Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir, 2024, Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes), pp. 249-271 in MycoKeys 107 on pages 249-271, DOI: 10.3897/mycokeys.107.125549
Additional file 2: Table S2. of Effects of exposure to Streptococcus iniae on microRNA expression in the head kidney of genetically improved farmed tilapia (Oreochromis niloticus)
Creators: name: Qiang, Jun
name: Fanyi Tao
name: He, Jie
name: Lanyi Sun
name: Pao Xu
name: Wenjin Bao
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Statistics of the small RNA reads in the CO library. The GIFT were injected with the 0.65% physiological saline as the control (CO). The small RNA reads of CO group were analyzed and built by deep-sequencing. (DOCX 13Â kb)
Lehetuaceae Tedersoo 2024, fam. nov.
Creators: name: Tedersoo, Leho
name: Magurno, Franco
name: Alkahtani, Saad
name: Mikryukov, Vladimir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Lehetuales
Lehetuaceae

description: Lehetuaceae Tedersoo fam. nov.
Type genus.
Lehetua Tedersoo.
Description.
Covers the monophyletic group in Lehetuales (Fig. 2). Phylogenetically delimited as the least inclusive clade covering sequence accessions EUK 1603180, EUK 1602375 and EUK 1602377 (Suppl. material 3).
Notes.
Recognised based on eDNA sequences only. Currently includes Lehetua and another potentially genus-level group that is represented by sequences EUK 1602869 (GSMc plot G 4531, Picea abies forest soil in Selisoo, Estonia, 57.621658 ° N, 27.179296 ° E) and EUK 1603296 (GSMc plot S 590, Populus tremula forest soil in Lehetu, Estonia, 59.01857 ° N, 24.28041 ° E); and unassigned sequences EUK 0025664 (GSMc plot G 5536, tropical rainforest soil in Bamboesi, Suriname, 5.54086 ° N, - 54.03131 ° E) and EUK 0030289 (GSMc plot AV 120, tropical rainforest soil in El Zafire, Colombia, - 3.9997 ° N, 69.8947 ° E).
description: Published as part of Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir, 2024, Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes), pp. 249-271 in MycoKeys 107 on pages 249-271, DOI: 10.3897/mycokeys.107.125549
SARS-CoV-2 variant of concern fitness and adaptation in primary human airway epithelia
Creators: name: Bailey A.B
name: Yount B.L
name: Tata P.R.
name: Lee R.E
name: Okuda K.
name: Wang J.R.
name: Edwards C.E
name: Shaffer K.M
name: Gallant S.C
name: Cawley A.M.
name: Wykoff J.A
name: Zhu D.R
name: Mallory M.L
name: Sontake V.
name: Meganck R.M.
name: Boucher R.C.
name: Tse L.V.
name: Baric R.S.
name: Kato T
name: Dang H
name: Ehre C.
name: Randell S.H.
name: Hagan R.S.
name: Miller M.B.
name: Nakano S
Publisher: name: Elsevier B.V.
Year: 2024

description: The severe acute respiratory syndrome coronavirus 2 pandemic is characterized by the emergence of novel variants of concern (VOCs) that replace ancestral strains. Here, we dissect the complex selective pressures by evaluating variant fitness and adaptation in human respiratory tissues. We evaluate viral properties and host responses to reconstruct forces behind D614G through Omicron (BA.1) emergence. We observe differential replication in airway epithelia, differences in cellular tropism, and virus-induced cytotoxicity. D614G accumulates the most mutations after infection, supporting zoonosis and adaptation to the human airway. We perform head-to-head competitions and observe the highest fitness for Gamma and Delta. Under these conditions, RNA recombination favors variants encoding the B.1.617.1 lineage 3′ end. Based on viral growth kinetics, Alpha, Gamma, and Delta exhibit increased fitness compared to D614G. In contrast, the global success of Omicron likely derives from increased transmission and antigenic variation. Our data provide molecular evidence to support epidemiological observations of VOC emergence.
Additional file 3: Table S3. of Exposure to household furry pets influences the gut microbiota of infants at 3â  4Â months following various birth scenarios
Creators: name: Tun, Hein
name: Konya, Theodore
name: Takaro, Tim
name: Brook, Jeffrey
name: Chari, Radha
name: Field, Catherine
name: Guttman, David
name: Becker, Allan
name: Piush Mandhane
name: Turvey, Stuart
name: Padmaja Subbarao
name: Sears, Malcolm
name: Scott, James
name: Kozyrskyj, Anita
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Cell Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Richness and diversity of infant faecal microbiota at 3â  4Â months according to birth scenarios and pet exposure. (DOCX 146 kb)
Additional file 4: Table S4. of Effects of exposure to Streptococcus iniae on microRNA expression in the head kidney of genetically improved farmed tilapia (Oreochromis niloticus)
Creators: name: Qiang, Jun
name: Fanyi Tao
name: He, Jie
name: Lanyi Sun
name: Pao Xu
name: Wenjin Bao
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Some of the miRNAs that were differentially expressed between the CO and IN libraries. Eight (miR-92/101c/310-3p/127/599/122-5p/10d-5p and let-7) were significantly up-regulated and 11 (miR-92d-3p/146-3p/17-5p/10/694/181b/138/10-5p/33a,/375-5p/10b) were significantly down-regulated in the IN library compared with the CO library based on deep-sequencing results. (DOCX 15Â kb)
Measurements of the electron-helicity asymmetry in the quasi-elastic ${\rm A}(\vec{e},e' p)$ process
Creators: name: Kolar, Tim
name: Paul, Sebouh J.
name: Achenbach, Patrick
name: Arenhövel, Hartmuth
name: Ashkenazi, Adi
name: Beričič, Jure
name: Böhm, Ralph
name: Bosnar, Damir
name: Brecelj, Tilen
name: Cline, Ethan
name: Cohen, Erez O.
name: Distler, Michael O.
name: Esser, Anselm
name: Friščić, Ivica
name: Gilman, Ronald
name: Giusti, Carlotta
name: Heilig, Matthias
name: Hoek, Matthias
name: Izraeli, David
name: Kegel, Simon
name: Klag, Pascal
name: Korover, Igor
name: Lichtenstadt, Jechiel
name: Mardor, Israel
name: Merkel, Harald
name: Middleton, Duncan G.
name: Mihovilovič, Miha
name: Müller, Julian
name: Müller, Ulrich
name: Olivenboim, Mor
name: Piasetzky, Eliezer
name: Pochodzalla, Josef
name: Ron, Guy
name: Schlimme, Björn S.
name: Schoth, Matthias
name: Schulz, Florian
name: Sfienti, Concettina
name: Širca, Simon
name: Spreckels, Rouven
name: Štajner, Samo
name: Stöttinger, Yvonne
name: Strauch, Steffen
name: Thiel, Michaela
name: Tyukin, Alexey
name: Weber, Adrian
name: Yaron, Israel
Publisher: name: arXiv
Year: 2021
Subjects: subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: We present measurements of the electron helicity asymmetry in quasi-elastic proton knockout from $^{2}$H and $^{12}$C nuclei by polarized electrons. This asymmetry depends on the fifth structure function, is antisymmetric with respect to the scattering plane, and vanishes in the absence of final-state interactions, and thus it provides a sensitive tool for their study. Our kinematics cover the full range in off-coplanarity angle $ϕ_{pq}$, with a polar angle $θ_{pq}$ coverage up to about 8 degrees. The missing energy resolution enabled us to determine the asymmetries for knock-out resulting in different states of the residual $^{11}$B system. We find that the helicity asymmetry for $p$-shell knockout from $^{12}$C depends on the final state of the residual system and is relatively large (up to $\approx 0.16$), especially at low missing momentum. It is considerably smaller (up to $\approx 0.01$) for $s$-shell knockout from both $^{12}$C and $^2$H. The data for $^2$H are in very good agreement with theoretical calculations, while the predictions for $^{12}$C exhibit differences with respect to the data.
Lehetua Tedersoo 2024, gen. nov.
Creators: name: Tedersoo, Leho
name: Magurno, Franco
name: Alkahtani, Saad
name: Mikryukov, Vladimir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Tracheophyta
Magnoliopsida
Lehetuales
Lehetuaceae
Lehetua

description: Lehetua Tedersoo gen. nov.
Type species.
Lehetua indrekii Tedersoo.
Description.
Covers the monophyletic group in Lehetuaceae (Fig. 2). Phylogenetically delimited as the least inclusive clade covering sequence accessions EUK 1603180, EUK 1602366 and EUK 1602374 (Suppl. material 3).
Notes.
Based on ITS and LSU sequences, Lehetua is comprised of 8–10 species. Other putative ITS - based species in Lehetua are represented by sequences EUK 1602811 (GSMc plot G 4105, Picea abies forest soil in Lepa, Estonia, 57.70158 ° N, 26.23993 ° E); EUK 1603124 (GSMc plot G 5003, Pinus sylvestris forest soil in Naissaar, Estonia; 59.5634 ° N, 24.5451 ° E); and EUK 0022184 (GSMc plot AV 106, Pseudomonotes tropenbosii rainforest soil in El Zafire, Colombia, - 3.995 ° N, - 69.898 ° E).
description: Published as part of Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir, 2024, Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes), pp. 249-271 in MycoKeys 107 on pages 249-271, DOI: 10.3897/mycokeys.107.125549
Additional file 1: Table S1. of Effects of exposure to Streptococcus iniae on microRNA expression in the head kidney of genetically improved farmed tilapia (Oreochromis niloticus)
Creators: name: Qiang, Jun
name: Fanyi Tao
name: He, Jie
name: Lanyi Sun
name: Pao Xu
name: Wenjin Bao
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Pharmacology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Cumulative mortality of GIFT at the injected dose of 105; 106; 107; 108 and 109 CFU ml-1 respectively for 96 h. (DOCX 13 kb)
Additional file 5: of Tracing Africaâ  s progress towards implementing the Non-Communicable Diseases Global action plan 2013â  2020: a synthesis of WHO country profile reports
Creators: name: Nyaaba, Gertrude
name: Stronks, Karien
name: Ama De-Graft Aikins
name: Kengne, Andre
name: Agyemang, Charles
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: WHO definitions of indicators and criteria. Description of data: WHO definitions of indicators and criteria_7c-10. (PDF 287Â kb)
Lehetua indrekii Tedersoo 2024, sp. nov.
Creators: name: Tedersoo, Leho
name: Magurno, Franco
name: Alkahtani, Saad
name: Mikryukov, Vladimir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Tracheophyta
Magnoliopsida
Lehetuales
Lehetuaceae
Lehetua
Lehetua indrekii

description: Lehetua indrekii Tedersoo sp. nov.
Diagnosis.
Separation from other species of Lehetua based on the ITS region (positions 219–248 ttataatcttacgaagtactgaggtgatta; one mismatch allowed) and LSU (positions 515–546 aactaaaggratgtggctcctcggagtgttta; one mismatch allowed) as indicated in Fig. 9.
Type.
Soil eDNA sample TUE 103095 (holotype); type sequence EUK 1603180 (lectotype); GSMc plot S 590, Populus tremula forest (soil sample TUE 003095) in Lehetu, Estonia, 59.01857 ° N, 24.28041 ° E.
Description.
Other sequences: EUK 1603180 (type locality); EUK 1602367 (LSU only; type locality; also found in 50 other sites in Estonia); EUK 1634481 (GSMc plot G 4195, Quercus robur woodland soil in Lustivere, Estonia, 58.66293 ° N, 26.08465 ° E); EUK 1603818 (GSMc plot G 5824, managed grassland soil in Kuremaa, Estonia, 58.74138 ° N, 26.52727 ° E); EUK 1603131 (GSMc plot G 4105, Picea abies forest soil in Lepa, Estonia, 57.70158 ° N, 26.23993 ° E); EUK 0021956 (GSMc plot G 5150, subarctic grassland soil in Kokelv, Norway, 70.61116 ° N, 24.62483 ° E); and EUK 0023592 (GSMc plot S 035, mixed deciduous forest soil in Kedrovaya Pad, Russia, 43.10834 ° N, 131.55447 ° E).
Etymology.
Lehetu (Estonian) refers to type locality (also meaning “ leafless ”); and Indrek (Estonian) refers to the first name of Indrek Hiiesalu who collected materials from the type locality.
Notes.
Found in Baltic States, Scandinavia and Russia, with ITS and LSU sequences differing up to 3.5 % and 0.2 %, respectively. Seems to be a generalist in terms of habitat type and soil pH; so far, not found from roots.
description: Published as part of Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir, 2024, Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes), pp. 249-271 in MycoKeys 107 on pages 249-271, DOI: 10.3897/mycokeys.107.125549
Additional file 3: of
                     Loa loa vectors Chrysops spp.: perspectives on research, distribution, bionomics, and implications for elimination of lymphatic filariasis and onchocerciasis
Creators: name: Kelly-Hope, Louise
name: Rossely Paulo
name: Thomas, Brent
name: Brito, Miguel
name: Unnasch, Thomas
name: Molyneux, David
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Historical maps of Chrysops distributions (PDF 674 kb)
Additional file 1: Table S1. of Effects of exposure to Streptococcus iniae on microRNA expression in the head kidney of genetically improved farmed tilapia (Oreochromis niloticus)
Creators: name: Qiang, Jun
name: Fanyi Tao
name: He, Jie
name: Lanyi Sun
name: Pao Xu
name: Wenjin Bao
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Pharmacology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Infectious Diseases
subject: FOS: Health sciences

description: Cumulative mortality of GIFT at the injected dose of 105; 106; 107; 108 and 109 CFU ml-1 respectively for 96 h. (DOCX 13 kb)
Additional file 3: Table S3. of Effects of exposure to Streptococcus iniae on microRNA expression in the head kidney of genetically improved farmed tilapia (Oreochromis niloticus)
Creators: name: Qiang, Jun
name: Fanyi Tao
name: He, Jie
name: Lanyi Sun
name: Pao Xu
name: Wenjin Bao
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Statistics of the small RNA reads in the IN library. The GIFT were was injected intraperitoneally with S. iniae at a concentration of 6.35 × 107CFUmL−1 as the infected group (IN). The small RNA reads of IN group were analyzed and built by deep-sequencing. (DOCX 13 kb)
Mi sexenio de investigación: un modelo de defensa de cinco aportaciones con sus narrativas e indicadores
Creators: name: Torres-Salinas, Daniel
Publisher: name: Zenodo
Year: 2025

description: Muestro un  modelo de defensa de aportaciones para la convocatoria 2024 de sexenios de investigación siguiendo este guión:

Referencia y repositoriosComprobar que está en un repositorio si no lo está subir a un repositorio institucional. Indicar handle

Breve resumen (máximo 4000 caracteres) Aportación preferenteResumen revista en españolPárrafito con la contribución al conocimiento        originalidad       tema prioritario        metodologíaMi contribución y posición al trabajo (utilizar CREDIT)

Indicios de relevancia e impacto (máximo 4000 caracteres)Indicar si es aportación preferenteIMPACTO CIENTÍFICO       Número de Citas (WoS, Scopus, …)        Factores de Impacto (IF; SJR, …)        Descargas y visualizaciones (revista o en el repositorio)  ..       Otros: proyectos, otras publicaciones, tesis…IMPACTO SOCIAL       Altmétricas, redes sociales (altmetric.com / PlumX)       Otras menciones: noticias, blogs CIENCIA ABIERTA       Los repositorios y las licencias CC creative        Cuento si tengo datos en abierto       Cuento si tengo material complementario
Additional file 4: Table S4. of Exposure to household furry pets influences the gut microbiota of infant at 3â  4Â months following various birth scenarios
Creators: name: Tun, Hein
name: Konya, Theodore
name: Takaro, Tim
name: Brook, Jeffrey
name: Chari, Radha
name: Field, Catherine
name: Guttman, David
name: Becker, Allan
name: Piush Mandhane
name: Turvey, Stuart
name: Padmaja Subbarao
name: Sears, Malcolm
name: Scott, James
name: Kozyrskyj, Anita
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Cell Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Relative abundance of dominant phyla and families in faecal microbiota of infants belonged to different stratified groups, according to birth scenarios and pet exposure. (DOCX 105 kb)
Additional file 1: Table S1. of Chronic nicotine differentially affects murine transcriptome profiling in isolated cortical interneurons and pyramidal neurons
Creators: name: Yang, Jie
name: Ai-Yi Liu
name: Tang, Bo
name: Luo, Dong
name: Lai, Yu-Jie
name: Zhu, Bing-Lin
name: Wang, Xue-Feng
name: Yan, Zhen
name: Chen, Guo-Jun
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Paired primer sequences used for RT-PCR. Table S2. Clean Summary. Table S3. Mapping result statistics. Table S4. Gene expression levels associated with non-neurons. (DOC 101Â kb)
title: An Impact of Marketing Strategies on University Students’ Online Shopping Behavior: A Case Study of Asia Eastern University of Science and Technology, Taiwan
Creators: name: Yuchi Chen
Publisher: name: Southeast Bangkok University
publisherIdentifierScheme: ROR
Year: 2024
Subjects: Marketing Strategies
Online Shopping Behavior
University Students

description: Supply Chain and Sustainability Research (SCSR), 3, 3, 1- 23
Kinetic dominance and the wavefunction of the universe
Creators: name: Álvarez, Gabriel
name: Alonso, Luis Martínez
name: Medina, Elena
Publisher: name: arXiv
Year: 2021
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We analyze the emergence of classical inflationary universes in a kinetic-dominated stage using a suitable class of solutions of the Wheeler-De Witt equation with a constant potential. These solutions are eigenfunctions of the inflaton momentum operator that are strongly peaked on classical solutions exhibiting either or both a kinetic dominated period and an inflation period. Our analysis is based on semiclassical WKB solutions of the Wheeler-De Witt equation interpreted in the sense of Borel (to perform a correct connection between classically allowed regions) and on the relationship of these solutions to the solutions of the classical model. For large values of the scale factor the WKB Vilenkin tunneling wavefunction and the Hartle-Hawking no-boundary wavefunctions are recovered as particular instances of our class of wavefunctions.
description: 26 pages, 6 figures
Lokrumales Tedersoo 2024, ord. nov.
Creators: name: Tedersoo, Leho
name: Magurno, Franco
name: Alkahtani, Saad
name: Mikryukov, Vladimir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Lokrumales

description: Lokrumales Tedersoo ord. nov.
Type family.
Lokrumaceae Tedersoo.
Description.
Covers the monophyletic group in Endogonomycetes (Fig. 2). Phylogenetically delimited as the least inclusive clade covering sequence accessions EUK 1203766, EUK 1600125 and EUK 1600268 (Suppl. material 3).
Notes.
Recognised based on eDNA sequences only. Currently includes Lokrumaceae and another potentially family-level taxon, represented by sequences EUK 1602809 (GSMc plot G 4499, rich, calcareous Picea abies forest soil in Kurisoo, Estonia; 59.12808 ° N, 25.76395 ° E); EUK 1603041 and EUK 1603145 (both GSMc plot G 4185, Picea - Pinus forest soil in Ristipalo, Estonia, 58.10241 ° N, 27.47874 ° E).
description: Published as part of Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir, 2024, Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes), pp. 249-271 in MycoKeys 107 on pages 249-271, DOI: 10.3897/mycokeys.107.125549
Targeting disparate spaces: new technology and old tools
Creators: name: Sivaraman, Vijay
name: Richey, Morgan M.
name: Bang, John
Publisher: name: Frontiers
Year: 2024

description: A growing number of inexpensive, publicly available, validated air quality monitors are currently generating granular and longitudinal data on air quality. The expansion of interconnected networks of these monitors providing open access to longitudinal data represents a valuable data source for health researchers, citizen scientists, and community members; however, the distribution of these data collection systems will determine the groups that will benefit from them. Expansion of these and other exposure measurement networks represents a unique opportunity to address persistent inequities across racial, ethnic, and class lines, if the distribution of these devices is equitable. We present a lean template for local implementation, centered on groups known to experience excess burden of pulmonary disease, leveraging five resources, (a) publicly available, inexpensive air quality monitors connected via Wi-Fi to a centralized system, (b) discharge data from a state hospital repository (c) the U.S. Census, (d) monitoring locations generously donated by community organizations and (e) NIH grant funds. We describe our novel approach to targeting air-quality mediated pulmonary health disparities, review logistical and analytic challenges encountered, and present preliminary data that aligns with a growing body of research: in a high-burden zip code in Durham North Carolina, the census tract with the highest proportions of African Americans experienced worse air quality than a majority European-American census tract in the same zip code. These results, while not appropriate for use in causal inference, demonstrate the potential of equitably distributed, interconnected air quality sensors.
Decomposition of BPS Moduli Spaces and Asymptotics of Supersymmetric Partition Functions
Creators: name: Ardehali, Arash Arabi
name: Hong, Junho
Publisher: name: arXiv
Year: 2021
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: We present a prototype for Wilsonian analysis of asymptotics of supersymmetric partition functions of non-abelian gauge theories. Localization allows expressing such partition functions as an integral over a BPS moduli space. When the limit of interest introduces a scale hierarchy in the problem, asymptotics of the partition function is obtained in the Wilsonian approach by $i)$ decomposing (in some suitable scheme) the BPS moduli space into various patches according to the set of light fields (lighter than the scheme dependent cut-off $Λ$) they support, $ii)$ localizing the partition function of the effective field theory on each patch (with cut-offs set by the scheme), and $iii)$ summing up the contributions of all patches to obtain the final asymptotic result (which is scheme-independent and accurate as $Λ\to\infty$). Our prototype concerns the Cardy-like asymptotics of the 4d superconformal index, which has been of interest recently for its application to black hole microstate counting in AdS$_5$/CFT$_4$. As a byproduct of our analysis we obtain the most general asymptotic expression for the index of gauge theories in the Cardy-like limit, encompassing and extending all previous results.
description: 56 pages, 2 figures. A short presentation of Section 2 is available at http://scgp.stonybrook.edu/video_portal/video.php?id=4953 v5: minor (sign) changes
Utilizing residual waste particles from polyethylene terephthalate (PET) waste pellet production in cement mortar
Creators: name: Koirala, Sudeep
name: Hirachan, Bisesh
name: Chhetri, Santosh Gharti
name: Gyawali, Tek Raj
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Space Science
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Science Policy

description: Polyethylene terephthalate (PET) bottle waste management is a global challenge, with PET pellet production generating 20-23% waste particles (PWP). These particles, when deposited in landfills, do not decompose and can disperse, posing health risks, while burning them releases hazardous gases. This study explores the use of PWP in masonry mortar by replacing sand at 0%, 5%, 10%, and 15% levels. Mortar mixtures with cement-sand ratios of 1:4 and 1:6, and a water-cement ratio of 0.50 were tested. The results showed that 5% PWP content improved mortar properties, including flow table value, water absorption, compressive strength, flexural strength, and splitting tensile strength, while reducing density and elastic modulus. Specifically, the 28-day compressive strength increased by 14.0% and 7.1% for the 1:4 and 1:6 mixes, respectively. The enhanced workability is attributed to the smooth, round shape, and zero water absorption of PWP particles, while the increase in mechanical strength is due to the pozzolanic properties of PWP. This solution addresses PWP waste management while improving mortar properties, contributing to sustainable construction practices, reducing sand usage, and promoting eco-friendly mortar and concrete production.
Additional file 3: Table S3. of Effects of exposure to Streptococcus iniae on microRNA expression in the head kidney of genetically improved farmed tilapia (Oreochromis niloticus)
Creators: name: Qiang, Jun
name: Fanyi Tao
name: He, Jie
name: Lanyi Sun
name: Pao Xu
name: Wenjin Bao
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Infectious Diseases
subject: FOS: Health sciences

description: Statistics of the small RNA reads in the IN library. The GIFT were was injected intraperitoneally with S. iniae at a concentration of 6.35 × 107CFUmL−1 as the infected group (IN). The small RNA reads of IN group were analyzed and built by deep-sequencing. (DOCX 13 kb)
The COVID-19 pandemic and OBGYN residency training: We have a problem and it’s not just masks
Creators: name: Morse J
name: Young O.M
name: Bui A.
name: Kraus A.C.
name: Malloy K
Publisher: name: BioMed Central Ltd
Year: 2024

description: Background: The COVID-19 pandemic has left no one untouched. Resident trainees have been driven to reconsider virtually every component of their daily lives. The purpose of this pilot study is to evaluate the impact of the COVID-19 pandemic on Obstetrics and Gynecology (OBGYN) residency training and education. Methods: A cross-sectional pilot study was conducted between 2/2022 and 5/2022. A survey was created and distributed to OBGYN residents. The survey queried the effects of the pandemic on OBGYN residents’ procedure skills training and mental health. Results: A total of 95 OBGYN residents across programs affiliated with each American College of Obstetricians and Gynecologists (ACOG) district participated in the survey. Among them, just over half (n = 52, 55%) self-identified as under-represented minorities. A significant majority, 80% (n = 81), felt their gynecological training was inadequate, with 70% of fourth-year residents expressing a lack of confidence in their ability to independently practice gynecology after graduation. This lack of confidence among fourth-year residents suggests a notable disparity in readiness for independent gynecological practice, linked to meeting ACGME requirements before completing their residency (p = 0.013). Among the residents who reported a negative impact of the pandemic on their mental health (n = 76, 80%), about 40% (n = 31) had contemplated self-harm or knew a colleague who considered or attempted suicide (p < 0.001). This issue was especially pronounced in residents experiencing burnout (n = 44, 46%), as nearly half (n = 19, 43%) reported suicidal thoughts or knew someone in their program who had such thoughts or engaged in self-harm (p = 0.048). Conclusions: Residents expressed concerns about reduced hands-on gynecological training and doubts about their readiness for independent practice post-residency, highlighting the need for enhanced support through mentorship and revised training curriculums. Additionally, despite the availability of mental health resources to address pandemic-induced burnout, their underuse suggests a need for more accessible time for residents to use at their discretion and flexible training schedules that encourage mental health support resource utilization.
title: Application of MATLAB-assisted Ridge Regression in Weight Reduction and Environmental Protection of Glass Bead Concrete
Creators: name: Yafeng He
Publisher: name: Southeast Bangkok University
publisherIdentifierScheme: ROR
Year: 2024
Subjects: MATLAB
Ridge regression
concrete lightweighting
vitrified microbeads
environmental performance

description: Supply Chain and Sustainability Research (SCSR), 3, 3, 40-48
Lokrumaceae Tedersoo 2024, fam. nov.
Creators: name: Tedersoo, Leho
name: Magurno, Franco
name: Alkahtani, Saad
name: Mikryukov, Vladimir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Lokrumales
Lokrumaceae

description: Lokrumaceae Tedersoo fam. nov.
Type genus.
Lokruma Tedersoo.
Description.
Covers the monophyletic group in Lokrumales (Fig. 2). Phylogenetically delimited as the least inclusive clade covering sequence accessions EUK 1203766, EUK 1600125 and EUK 1600078 (Suppl. material 3).
Notes.
Recognised based on eDNA sequences only. Currently includes Lokruma and a few sequences not assigned to any genus; these include EUK 0014543 and EUK 0006923 (both GSMc plot G 5106, subtropical forest soil in Brejo da Lapa, Brazil, - 22.3582 ° N, - 44.7383 ° E) and EUK 1602939 (GSMc plot G 4464, Quercus robur forest soil in Ruu, Estonia, 59.45059 ° N, 25.22166 ° E).
description: Published as part of Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir, 2024, Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes), pp. 249-271 in MycoKeys 107 on pages 249-271, DOI: 10.3897/mycokeys.107.125549
Additional file 1: Table S1. of Chronic nicotine differentially affects murine transcriptome profiling in isolated cortical interneurons and pyramidal neurons
Creators: name: Yang, Jie
name: Ai-Yi Liu
name: Tang, Bo
name: Luo, Dong
name: Lai, Yu-Jie
name: Zhu, Bing-Lin
name: Wang, Xue-Feng
name: Yan, Zhen
name: Chen, Guo-Jun
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Mental Health

description: Paired primer sequences used for RT-PCR. Table S2. Clean Summary. Table S3. Mapping result statistics. Table S4. Gene expression levels associated with non-neurons. (DOC 101Â kb)
title: Global Green Logistics: Challenges and Opportunities in Vietnam's Sustainable Development
Creators: name: Hsu, Eddie
Publisher: name: Southeast Bangkok University
publisherIdentifierScheme: ROR
Year: 2024
Subjects: Green Logistics
Carbon Neutrality
Vietnam Logistics Industry
Green Technology
Sustainable Development

description: Supply Chain and Sustainability Research (SCSR), 3, 3, 49-62
Additional file 4: Table S4. of Exposure to household furry pets influences the gut microbiota of infants at 3â  4Â months following various birth scenarios
Creators: name: Tun, Hein
name: Konya, Theodore
name: Takaro, Tim
name: Brook, Jeffrey
name: Chari, Radha
name: Field, Catherine
name: Guttman, David
name: Becker, Allan
name: Piush Mandhane
name: Turvey, Stuart
name: Padmaja Subbarao
name: Sears, Malcolm
name: Scott, James
name: Kozyrskyj, Anita
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Cell Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Relative abundance of dominant phyla and families in faecal microbiota of infants belonged to different stratified groups, according to birth scenarios and pet exposure. (DOCX 105 kb)
Lokruma Tedersoo 2024, gen. nov.
Creators: name: Tedersoo, Leho
name: Magurno, Franco
name: Alkahtani, Saad
name: Mikryukov, Vladimir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Tracheophyta
Magnoliopsida
Lokrumales
Lokrumaceae
Lokruma

description: Lokruma Tedersoo gen. nov.
Type species.
Lokruma stenii Tedersoo.
Description.
Covers the monophyletic group in Lokrumaceae (Fig. 2). Phylogenetically delimited as the least inclusive clade covering sequence accessions EUK 1203766, EUK 1600125 and EUK 1600078 (Suppl. material 3).
Notes.
Based on ITS sequences, Lokruma is comprised of 35–40 species, some of which are represented by sequences EUK 1200048 (GSMc plot G 5130, grassland soil in Angera, Italy, 45.77336 ° N, 8.59657 ° E); EUK 1602967 (GSMc plot G 4626, Picea - Populus forest soil in Kõrve, Estonia, 59.07754 ° N, 26.76144 ° E); and EUK 1603058 (Picea abies forest soil in Serga, Estonia, 57.76052 ° N, 27.47502 ° E). Given the relatively high intraspecific differences and low interspecific differences, the LSU region is not optimal for distinguishing species of Lokruma.
description: Published as part of Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir, 2024, Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes), pp. 249-271 in MycoKeys 107 on pages 249-271, DOI: 10.3897/mycokeys.107.125549
Lemyra (Lemyra) venosa
Creators: name: Singh, Navneet
name: Joshi, Rahul
name: Kirti, Jagbir Singh
name: Bisht, Santosh Singh
name: Param, Harsimranjeet Singh
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Arctiidae
Lemyra
Lemyra venosa

description: 55. Lemyra (Lemyra) venosa (Moore, 1879): 41
= D [iacrisia] pseudomaenas Rothschild, 1919: 131
Type Locality: Darjiling [India, West Bengal]
Distribution: West Bengal (Darjeeling), Meghalaya (Khasi Hills) (Dubatolov 2010), Sikkim (Hampson 1901), Assam, Arunachal Pradesh (Arora & Chaudhury 1982), Nagaland (Chaudhury 2003).
description: Published as part of Singh, Navneet, Joshi, Rahul, Kirti, Jagbir Singh, Bisht, Santosh Singh & Param, Harsimranjeet Singh, 2021, A catalogue of Indian Arctiinae (Erebidae, Lepidoptera), pp. 1-118 in Zootaxa 5058 (1) on page 24, DOI: 10.11646/zootaxa.5058.1.1, http://zenodo.org/record/5602576
Additional file 1: Appendix 1. of The impact of post-operative sepsis on mortality after hospital discharge among elective surgical patients: a population-based cohort study
Creators: name: Lixin Ou
name: Chen, Jack
name: Hillman, Ken
name: Arthas Flabouris
name: Parr, Michael
name: Assareh, Hassan
name: Bellomo, Rinaldo
Publisher: name: Figshare
Year: 2017
Subjects: Space Science
Medicine
Computational Biology

description: ICD-10-AM codes used to define postoperative sepsis. (DOCX 16 kb)
Saicinae
Creators: name: Blinn, Robert L.
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Reduviidae

description: Key to the species of Saicinae in America North of Mexico
1. Pronotum armed with spines near humeral angles, scutellum with spine erect............................................................ 2
- Pronotum unarmed at humeral angles, scutellum with spine strongly erect or reclined .............................................. 4
2. Process of male hypopygium with a single erect spine, posterior margin of abdominal sternum VII in females sloping ventrocephalad, antennal segment II subequal to one-third length of antennal segment I ...................................... .......................................................................................................................................... Pseudosaica florida (Barber)
- Process of male hypopygium bifurcate, posterior margin of abdominal sternum VII in females vertical to subvertical, antennal segment II subequal to one-half length of antennal segment I....................................................................... 3
3. Forewing with two closed cells, general coloration yellowish brown, females may be micropterous .......................... .......................................................................................................................................................... Saica elkinsi Blinn
- Forewing with 3 closed cells, general coloration red, brachyptery unknown in females ............................................... ....................................................................................................................................... Saica apicalis Osborn & Drake
4. Protibiae with one, protibiae with two series of stout spines or setiferous tubercles, scutellum with spine erect ......... ................................................................................................................ Tagalis inornata cubensis McAtee & Malloch
- Fore tibiae and femora without stout spines or setiferous tubercles, scutellum with spine reclined ........................... 5
5. Dorsum with a broad fuscous stripe extending along midline, antennae and legs densely pilose ................................. ................................................................................................................................. Oncerotrachelus acuminatus (Say)
- Dorsum uniformely pale yellow, antennae and legs without dense pilosity ............... Oncerotrachelus pallidus Barber
description: Published as part of Blinn, Robert L., 2008, Tagalis inornata cubensis McAtee & Malloch (Hemiptera: Heteroptera: Reduviidae: Saicinae): First record from the continental United States, pp. 66-68 in Zootaxa 1912 on pages 67-68, DOI: 10.5281/zenodo.274548