cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Pseudochrobactrum algeriensis Loperena-Barber & Khames & Leclercq & Zygmunt & Babot & Zúñiga-Ripa & Gutiérrez & Oumouna & Moriyón & Cloeckaert & Conde-Álvarez 2022, SP. NOV.
Creators: name: Loperena-Barber, Maite
name: Khames, Mammar
name: Leclercq, Sébastien O.
name: Zygmunt, Michel S.
name: Babot, Esteban D.
name: Zúñiga-Ripa, Amaia
name: Gutiérrez, Ana
name: Oumouna, Mustapha
name: Moriyón, Ignacio
name: Cloeckaert, Axel
name: Conde-Álvarez, Raquel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Bacteria
Proteobacteria
Alphaproteobacteria
Rhizobiales
Brucellaceae
Pseudochrobactrum
Pseudochrobactrum algeriensis

description: DESCRIPTION OF PSEUDOCHROBACTRUM ALGERIENSIS SP. NOV.
 Pseudochrobactrum algeriensis (al.ge.ri.en´sis. N.L. masc. adj. algeriensis of or belonging to Algeria, referring to the isolation place). Aerobic, Gram-stain-negative, oxidase- and catalase-positive, non-motile and rod-shaped. Non-pigmented, beige colonies with regular edges with a diameter of about 2 mm. Good growth occurs at 18–38°C within 24–48h on TSA, nutrient agar, MacConkey and CPSE. In API 20NE tests, urease, cytochrome oxidase, citrate utilization and assimilation of D-glucose,D-mannose,L-malate, and N -acetylD -glucosamine are positive. Denitrification, indole production, D-glucose fermentation, arginine dihydrolase, aesculin hydrolysis (β-glucosidase), gelatin hydrolysis (protease), β-galactosidase and assimilation of gluconate, capric acid, adipic acid, phenylacetic acid, L-arabinose, maltose and D-mannitol are negative. The major fatty acids are C 18:0 and C 18:1. The polar lipid profile consists of the major compounds phosphatidylethanolamine, ornithine-lipids, phosphatidylglycerol, cardiolipin and phosphatidylcholine, plus moderate amounts of PMME, PDME and other aminolipids.
 The type strain is C130915_07 T (CECT 30232 T =LMG 32378 T) isolated from lymph nodes of an Algerian cow.
description: Published as part of Loperena-Barber, Maite, Khames, Mammar, Leclercq, Sébastien O., Zygmunt, Michel S., Babot, Esteban D., Zúñiga-Ripa, Amaia, Gutiérrez, Ana, Oumouna, Mustapha, Moriyón, Ignacio, Cloeckaert, Axel & Conde-Álvarez, Raquel, 2022, Pseudochrobactrum algeriensis sp. nov., isolated from lymph nodes of Algerian cattle, pp. 1-7 in International Journal of Systematic and Evolutionary Microbiology (005223) (005223) 72 (2) on page 6, DOI: 10.1099/ijsem.0.005223, http://zenodo.org/record/6224086
Nonperturbative Amplifications of Inhomogeneities in a Self-Reproducing Universe
Creators: name: Linde, Andrei
name: Linde, Dmitri
name: Mezhlumian, Arthur
Publisher: name: arXiv
Year: 1996
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Astrophysics (astro-ph)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We investigate the distribution of energy density in a stationary self-reproducing inflationary universe. We show that the main fraction of volume of the universe in a state with a given density at any given moment of proper time t is concentrated near the centers of deep exponentially wide spherically symmetric wells in the density distribution. Since this statement is very surprising and counterintuitive, we perform our investigation by three different analytical methods to verify our conclusions, and then confirm our analytical results by computer simulations. If one assumes that we are typical observers living in the universe at a given moment of time, then our results may imply that we should live near the center of a deep and exponentially large void, which we will call infloid. Validity of this particular interpretation of our results is not quite clear since it depends on the as-yet unsolved problem of measure in quantum cosmology. Therefore at the moment we would prefer to consider our results simply as a demonstration of nontrivial properties of the hypersurface of a given time in the fractal self-reproducing universe, without making any far-reaching conclusions concerning the structure of our own part of the universe. Still we believe that our results may be of some importance since they demonstrate that nonperturbative effects in quantum cosmology, at least in principle, may have significant observational consequences, including an apparent violation of the Copernican principle.
description: 31 pages, 3 figures
Synthesis of new carbon-nitrogen composites based on waste sweet drinks
Creators: name: Kaźmierczak-Raźna, Justyna
name: Pietrzak, Robert
name: Nowicki, Piotr
Publisher: name: Faculty of Geoengineering, Mining and Geology, Wrocław University of Technology, Wrocław
Year: 2019
Subjects: activated carbon, Physical activation, physico-chemical properties, carbon-nitrogen composites, waste sweet drinks

description: Physicochemical Problems of Mineral Processing; ISSN 2084-4735
Additional file 2: of Predictors of 1-year mortality in adult lung transplant recipients: a systematic review and meta-analysis
Creators: name: Foroutan, Farid
name: Guyatt, Gordon
name: Friesen, Erik
name: Lozano, Luis
name: Sidhu, Aman
name: Meade, Maureen
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Cancer
subject: Science Policy

description: Study eligibility form. (DOCX 18 kb)
Etude et Application d’un Système de Communication M2M
Creators: name: Djehaiche, Rania
name: Benziouche, Nihad
Publisher: name: figshare
Year: 2021
Subjects: subject: 100510 Wireless Communications
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: Notre projet consiste à réaliser un système de communication M2M dans une application domotique qui est la maison intelligente à base d’une plateforme Arduino/Android. Ce système est divisé en trois parties faisant appel à des compétences en Télécommunications, en Electronique, et en Informatique. La première partie se focalise sur les différents protocoles et réseaux de communication, la deuxième sur la création et l’implémentation du système en vue de le rendre commandable. La troisième partie traite de la programmation du système avec les modules utilisés (Capteur, Module Bluetooth ...). Pour cela nous avons réalisé une maquette électronique sur laquelle on a intégré notre système pour avoir un aperçu réel. Notre système accompli plusieurs tâches et fonctionnalités que doit fournir une maison intelligente (système d’alarme, porte automatique, Eclairage, détection du Gaz et des incendies, l’acquisition de la temperature,etc …). Tous ces systèmes vont être contrôlés par un simple Smartphone grâce à une application mobile. Cette solution permet de piloter l’habitat à distance, ainsi il assure la sureté et le confort dans la maison.
Extended diffeomorphism algebras and trajectories in jet space
Creators: name: Larsson, T. A.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Mathematical Physics (math-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Let the DRO (Diffeomorphism, Reparametrization, Observer) algebra DRO(N) be the extension of $diff(N)\oplus diff(1)$ by its four inequivalent Virasoro-like cocycles. Here $diff(N)$ is the diffeomorphism algebra in $N$-dimensional spacetime and $diff(1)$ describes reparametrizations of trajectories in the space of tensor-valued $p$-jets. DRO(N) has a Fock module for each $p$ and each representation of $gl(N)$. Analogous representations for gauge algebras (higher-dimensional Kac-Moody algebras) are also given. The reparametrization symmetry can be eliminated by a gauge fixing procedure, resulting in previously discovered modules. In this process, two DRO(N) cocycles transmute into anisotropic cocycles for $diff(N)$. Thus the Fock modules of toroidal Lie algebras and their derivation algebras are geometrically explained.
description: Expressions for abelian charges corrected. Published version
Handling Anisotropic Conductivities in the EEG Forward Problem with a Symmetric Formulation
Creators: name: Pillain, Axelle
name: Rahmouni, Lyes
name: Andriulli, Francesco
Publisher: name: arXiv
Year: 2019
Subjects: subject: Medical Physics (physics.med-ph)
subject: FOS: Physical sciences

description: The electroencephalography (EEG) forward problem, the computation of the electric potential generated by a known electric current source configuration in the brain, is a key step of EEG source analysis. In this problem, it is often desired to model the anisotropic conductivity profiles of the skull and of the white matter. These profiles, however, cannot be handled by standard surface integral formulations and the use of volume finite elements is required. Leveraging on the representation theorem using an anisotropic fundamental solution, this paper proposes a modified symmetric formulation for solving the EEG forward problem by a surface integral equation which can take into account anisotropic conductivity profiles. A set of numerical results is presented to corroborate theoretical treatments and to show the impact of the proposed approach on both canonical and real case scenarios.
description: Physics in medicine and biology (2018)
Ruminococcus bovis Gaffney & Embree & Gilmore & Embree 2021, SP. NOV.
Creators: name: Gaffney, James
name: Embree, Jordan
name: Gilmore, Sean
name: Embree, Mallory
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Bacteria
Firmicutes
Clostridia
Clostridiales
Ruminococcaceae
Ruminococcus
Ruminococcus bovis

description: DESCRIPTION OF RUMINOCOCCUS BOVIS SP. NOV.
 Ruminococcus bovis (bo'vis. L. gen. n. bovis of the cow) Ruminococcus bovis is an obligately anaerobic, catalasenegative and oxidase-negative bacterium. It is Gram-stainpositive and forms chains of small cocci when cultured in liquid medium. When cultured on TSB+FAC solid medium, it forms small, slightly opaque, off-white, circular colonies with even margins. Fermentation of D-galactose,D-glucose, D-fructose, maltose, glycogen, aesculin/ferric citrate and starch is indicated by API CH 50. The major fermentation product is acetate, with ethanol and glycerol as minor products. No lactate, butyrate, butanol, propionate, succinate or pyruvate is produced.
 The type strain is JE7A12 T (=ATCC TSD-225 T =NCTC 14479 T) and was originally isolated from rumen content of a healthy, Holstein cow from Tulare, California, USA. The genomic DNA G+C content of the type strain is 34.6 mol%.
description: Published as part of Gaffney, James, Embree, Jordan, Gilmore, Sean & Embree, Mallory, 2021, RUMiNOCOCCUS BOViS sp. nov., a novel species of amylolytic RUMiNOCOCCUS isolated from the rumen of a dairy cow, pp. 1-7 in International Journal of Systematic and Evolutionary Microbiology (004924) (004924) 71 (8) on page 6, DOI: 10.1099/ijsem.0.004924, http://zenodo.org/record/6224136
Additional file 3: of Predictors of 1-year mortality in adult lung transplant recipients: a systematic review and meta-analysis
Creators: name: Foroutan, Farid
name: Guyatt, Gordon
name: Friesen, Erik
name: Lozano, Luis
name: Sidhu, Aman
name: Meade, Maureen
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Science Policy

description: Risk of bias for predictor studies. (DOCX 17 kb)
Liparis suborbicularis Summerh.
Creators: name: Droissart, Vincent
name: Sonké, Bonaventure
name: Lowry Ii, Porter P.
name: Pollard, Benedict John
name: Stévart, Tariq
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Asparagales
Orchidaceae
Liparis
Liparis suborbicularis

description: Liparis suborbicularis Summerh.
Bulletin of Miscellaneous Information, Kew 1934: 210 (1934).
— Type: Nigeria, district d’Oban, Talbot 871 (holo-, BM).
MATÉRIEL EXAMINÉ. — Cameroun. 5 km NE Bambili, près de Bamenda, 26.VI.1970, Bauer 87 (K!). — Nkambe-Binka, 01.IX.1952, Savory UCI 380 (K!).
Nigeria. NE State, Chappal Waddi, 03.VI.1972, Chapman 2866 (K!); near Mayo Toloro, Dorofi, 29.VI.1972, Chapman 2932 (K!). — Bambui, 1976, Botté 511 (K!).
DISTRIBUTION. — Nigeria, Cameroun (Fig. 1H).
CONSERVATION. — Vulnérable: VU A2c; B2ab(iii), d’après Pollard (2011: 406).
NOTE
Nous n’avons pas pu retrouver le type de Liparis suborbicularis Summerh. lors de notre visite au BM, mais un dessin détaillé de la fleur de cet échantillon a été vu à K. Liparis suborbicularis est signalé au Gabon par Szlachetko & Olszewski (2001a) et Govaerts et al. (2010) qui ne citent pas d’échantillons. Cependant la Flore du Gabon (Szlachetko et al. 2004) et la Checklist des Plantes Vasculaires du Gabon (Sosef et al. 2006) ne reprennent pas cette espèce et, à notre connaissance, aucun spécimen provenant du Gabon n’a été cité dans la littérature. Compte tenu de son habitat préférentiel, les formations végétales montagnardes et l’absence de relief assez élevé au Gabon pour héberger ce type de milieu, nous pensons que L. suborbicularis ne serait pas présent dans ce pays et que la signalisation faite dans la Flore du Cameroun (Szlachetko & Olszewski 2001a) est erronée. L’échantillon Annet 315 (Lolodorf, mont Findé, P!) rattaché à cette espèce par Szlachetko & Olszewski (2001a) est stérile et son identification est incertaine. Nous ne l’avons donc pas considéré pour la carte de distribution (Fig. 1H). Deux échantillons récoltés au mont Oku (Kilum, 2320 m, 30.X.1996, Zapfack 1155 et Kilum (Ewook Etele), 2350 m, 6.XI.1996, Etuge 3344) et cités par Cribb et al. (2000) n’ont pas pu être examinés.
En reprenant le traitement taxonomique mentionné dans Govaerts et al. (2010), nous avions considéré Liparis pentagonalis Szlach. comme un synonyme de L. suborbicularis (Droissart et al. 2006). Cependant, l’examen des échantillons collectés au Gabon (Sosef et al. 2006) et qui ont été assignés à L. pentagonalis a montré que ces deux taxons étaient bien distincts.
description: Published as part of Droissart, Vincent, Sonké, Bonaventure, Lowry Ii, Porter P., Pollard, Benedict John & Stévart, Tariq, 2012, Notes taxonomiques et chorologiques sur quelques Orchidaceae endémiques d'Afrique centrale atlantique, pp. 23-35 in Adansonia (3) (3) 34 (1) on pages 31-32, DOI: 10.5252/a2012n1a3, http://zenodo.org/record/4599312
A Benchmark Study of Machine Learning Models for Online Fake News Detection
Creators: name: Khan, Junaed Younus
name: Khondaker, Md. Tawkat Islam
name: Afroz, Sadia
name: Uddin, Gias
name: Iqbal, Anindya
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computation and Language (cs.CL)
subject: Information Retrieval (cs.IR)
subject: Machine Learning (cs.LG)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: The proliferation of fake news and its propagation on social media has become a major concern due to its ability to create devastating impacts. Different machine learning approaches have been suggested to detect fake news. However, most of those focused on a specific type of news (such as political) which leads us to the question of dataset-bias of the models used. In this research, we conducted a benchmark study to assess the performance of different applicable machine learning approaches on three different datasets where we accumulated the largest and most diversified one. We explored a number of advanced pre-trained language models for fake news detection along with the traditional and deep learning ones and compared their performances from different aspects for the first time to the best of our knowledge. We find that BERT and similar pre-trained models perform the best for fake news detection, especially with very small dataset. Hence, these models are significantly better option for languages with limited electronic contents, i.e., training data. We also carried out several analysis based on the models' performance, article's topic, article's length, and discussed different lessons learned from them. We believe that this benchmark study will help the research community to explore further and news sites/blogs to select the most appropriate fake news detection method.
description: 22 pages, 5 figures, to be published in Machine Learning with Applications journal
Additional file 1: of Predictors of 1-year mortality in adult lung transplant recipients: a systematic review and meta-analysis
Creators: name: Foroutan, Farid
name: Guyatt, Gordon
name: Friesen, Erik
name: Lozano, Luis
name: Sidhu, Aman
name: Meade, Maureen
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Cancer
subject: Science Policy

description: Search strategy. (DOCX 23 kb)
$\cal N$-Extension of duble-graded supersymmetric and superconformal quantum mechanics
Creators: name: Aizawa, N.
name: Amakawa, K.
name: Doi, S.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mathematical Physics (math-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In the recent paper, Bruce and Duplij introduced a double-graded version of supersymmetric quantum mechanics (SQM). It is an extension of Lie superalgebraic nature of ${\cal N}=1$ SQM to a $\mathbb{Z}_2^2$-graded superalgebra. In this work, we propose an extension of Bruce-Duplij model to higher values of $\cal N.$ Furthermore, it is shown that our construction of double-graded SQM is a special case of the method which converts a given Lie superalgebra to a $\mathbb{Z}_2^2$-graded superalgebra. By employing this method one may convert a model of superconformal mechanics to its double-graded version. The simplest example of ${\cal N}=1$ double-graded superconformal mechanics is studied in some detail.
description: 15 pages, 2 figures, new reference, error corrections
Improving Recycling: An Analysis of Formal and Informal Recycling in New York City
Creators: Jovine, Olivia Maria Titania
Publisher: name: Columbia University
Year: 2015
Subjects: subject: Recycling (Waste, etc.)--Government policy
subject: City planning
subject: Ecology
subject: FOS: Biological sciences
subject: Public policy (Law)

description: The purpose of ‘Improving Recycling: An Analysis Of Formal & Informal Recycling In New York City’ is to make policy recommendations for the long-term systemic change to New York State’s bottle bill legislation and the city’s municipal recycling programs. The policy recommendations seek to increase recycling productivity while providing benefits to informal recyclers, commonly called “canners”. As such, this thesis will investigate the New York Department of Sanitation’s public space recycling program and systems of recycling as mandated by the state’s bottle bill; including but not limited to, describing processes of deposit and redemption for bottles and cans. This thesis also includes descriptive analysis of the practice of redeeming bottles and cans for their five cent deposit value. Through a general quantitative and qualitative analysis of formal and informal recycling systems for bottles and cans, several policy recommendations for legislators at the city and state level are proposed. This thesis has direct implications to the field of urban planning by seeking to remediate environmental and social justice issues and improve urban quality of life. By diverting municipal solid waste from landfills and incinerators air quality is improved and greenhouse gas emissions are reduced. It is concluded that the public space recycling program is a valuable component of municipal recycling; redemption centers not only need to be “rebranded” but the number of locations should be increased; and finally, the bottle bill legislation should be reimagined and applied to a material that currently has no national market value (plastic bags, textiles, or compost).
MicroRNA-494 induces breast cancer cell apoptosis and reduces cell viability by inhibition of nicotinamide phosphoribosyltransferase expression and activity
Creators: name: Ghorbanhosseini, Seyedeh Sara
name: Nourbakhsh, Mitra
name: Zangooei, Mohammad
name: Abdolvahabi, Zohreh
name: Bolandghamtpour, Zahra
name: Hesari, Zahra
name: Yousefi, Zeynab
name: Panahi, Ghodratollah
name: Meshkani, Reza
Publisher: name: IfADo - Leibniz Research Centre for Working Environment and Human Factors, Dortmund
Year: 2019
Subjects: breast cancer
NAMPT
apoptosis
miR-494
microRNA

description: Breast cancer (BC) is the most prevalent cause of cancer-related death in women worldwide. BC is frequently associated with elevated levels of nicotinamide phosphoribosyltransferase (NAMPT) in blood and tumor tissue. MicroRNA-494 (miR-494) has been described to play key anti-tumor roles in human cancers. The aim of the present study was to investigate the inhibitory effect of miR-494 on NAMPT-mediated viability of BC cells. In this experimental study, MCF-7 and MDA-MB-231 cells were cultured and then transfected with miR-494 mimic, miR-494 inhibitor and their negative controls. The mRNA and protein expression of NAMPT were assessed using real-time PCR and Western blotting, respectively. Subsequently, intracellular NAD levels were determined by a colorimetric method. Finally, cell apoptosis was examined by ﬂow cytometry. Bioinformatics evaluations predicted NAMPT as a miR-494 target gene which was confirmed by luciferase reporter assay. Our results showed an inverse relationship between the expression of miR-494 and NAMPT in both MCF-7 and MDA-MB-231 cell lines. miR-494 significantly down-regulated NAMPT mRNA and protein expression and was also able to reduce the cellular NAD content. Cell viability was decreased following miR-494 up-regulation. In addition, apoptosis was induced in MCF-7 and MDA-MB-231 cells by miR-494 mimic. Our findings indicate that miR-494 acts as a tumor suppressor and has an important effect in suppressing the growth of BC cells through NAMPT. Therefore, miR-494 might be considered as a novel therapeutic target for the management of human breast cancer.
description: EXCLI Journal; 18:Doc838; ISSN 1611-2156
title: Helichrysum bracteatum (Vent.) Willd.
Creators: name: :None
Publisher: name: Universitätsbibliothek
Year: 2009
Subjects: subject: Digitale Pflanzenbilder: Sammlung Dietmar Brandes
subject: 580

description: Pflanzensammlung Dietmar Brandes: Digitale Pflanzenbilder
title: Venir dans le Haut-Atlas et revenir à la ruralité. Voyages et quêtes d’un idéal au Maroc
title: Coming to the High-Atlas and Returning to Rurality. Travels and Quests for an Ideal in Morocco
Creators: name: Mulet, Pascal
Publisher: name: ethnographiques.org
Year: 2019
Subjects: Migration
Migrants
descendants d’émigrés
Voyage
Mobilité
Retours
Tourisme des racines
Tourisme diasporique
Tourisme mémoriel
Diaspora
Maroc
Ethnologie

description: Je questionne dans cet article les expériences de voyageurs de France métropolitaine revenant de façon régulière dans une région berbérophone et agropastorale du Haut-Atlas au Maroc connue dans le cadre touristique et avec laquelle aucun lien a priori n’est pensé. Il s’agit d’interroger le revenir comme projet de constitution d’un lien particulier avec un lieu et ses habitants, projet qui prend forme et s’actualise par les retours effectifs et les démarches qu’ils impliquent. Analyser les trajectoires et pratiques de ces voyageurs permettra de relever en quoi les investissements (pratiques et affectifs) dans la région s’inscrivent dans une quête plus longue d’un modèle de ruralité, au-delà des intérêts pour les particularités socioculturelles locales. Revenir (de façon régulière) s’apparente à un processus complexe et parfois coûteux de familiarisation avec un lieu qui répond à des attentes forgées avant sa connaissance. Ainsi, en contextualisant le venir et ses motifs, on peut se demander dans quelle mesure il n’est pas déjà un revenir.
description: In this paper, I question the experiences of travellers from metropolitan France who regularly visit a Berber-speaking, agro-pastoral area of the High-Atlas in Morocco. All of them became acquainted with this area through tourism and none had any former relation to it. I analyse this “return” as a project of setting up a particular tie with a place and its inhabitants. This kind of project is formed and actualized by repeated voyages returns and what they imply in terms of preparation. The analysis of travellers’ trajectories and practices underlines how these (practical and emotional) investments in the area take place within the context of a more general quest for a model of rurality that goes beyond an interest in local sociocultural particularities. Returning with regularity involves a complex and sometimes costly process of familiarization with a place that is associated with expectations formulated before the initial visit. By contextualizing these visits and the motivations that underpin them, one can examine to what extent they are not a “return” to something that has its roots elsewhere.
Fluctuations of wave functions about their classical average
Creators: name: Benet, L.
name: Flores, J.
name: Hernandez-Saldaña, H.
name: Izrailev, F. M.
name: Leyvraz, F.
name: Seligman, T. H.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Chaotic Dynamics (nlin.CD)
subject: Condensed Matter (cond-mat)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Quantum-classical correspondence for the average shape of eigenfunctions and the local spectral density of states are well-known facts. In this paper, the fluctuations that quantum mechanical wave functions present around the classical value are discussed. A simple random matrix model leads to a Gaussian distribution of the amplitudes. We compare this prediction with numerical calculations in chaotic models of coupled quartic oscillators. The expectation is broadly confirmed, but deviations due to scars are observed.
description: 9 pages, 6 figures. Sent to J. Phys. A
Asymptotics of Universal Probability of Neighboring Level Spacings at the Anderson Transition
Creators: name: Zharekeshev, Isa Kh.
name: Kramer, Bernhard
Publisher: name: arXiv
Year: 1997
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Chaotic Dynamics (nlin.CD)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The nearest-neighbor level spacing distribution is numerically investigated by directly diagonalizing disordered Anderson Hamiltonians for systems of sizes up to 100 x 100 x 100 lattice sites. The scaling behavior of the level statistics is examined for large spacings near the delocalization-localization transition and the correlation length exponent is found. By using high-precision calculations we conjecture a new interpolation of the critical cumulative probability, which has size-independent asymptotic form \ln I(s) \propto -s^α with α= 1.0 \pm 0.1.
description: 5 pages, RevTex, 4 figures, to appear in Physical Review Letters
Serpentinimonas raichei Bird & Kuenen & Osburn & Tomioka & Ishii & Barr & Nealson & Suzuki 2021, SP. NOV.
Creators: name: Bird, Lina J.
name: Kuenen, J. Gijs
name: Osburn, Magdalena R.
name: Tomioka, Naotaka
name: Ishii, Shun'ichi
name: Barr, Casey
name: Nealson, Kenneth H.
name: Suzuki, Shino
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Bacteria
Proteobacteria
Gammaproteobacteria
Burkholderiales
Burkholderiaceae
Serpentinimonas
Serpentinimonas raichei

description: DESCRIPTION OF SERPENTINIMONAS RAICHEI SP. NOV.
 Serpentinimonas raichei (rai′ che.i. N.L. gen. n. raichei, named after R. Raiche, one of the owners of The Cedars nature reserve).
 In addition to the characteristics given above in the genus description, S. raichei has the characteristics described below. Growth occurs at 18–37 °C and pH 10.0–11.5 with optimal growth at 30°C and pH 11.0. NaCl ranges from 0 to 0.5 g l−1. The DNA base composition of the type strain is 66.6% G+C (determined from the genome). The strain grows autotrophically with hydrogen gas and calcium carbonate and heterotrophically on acetate, butyrate, lactate, pyruvate, ethanol, cyclohexane and fumarate under microaerophilic condition. The strain cannot utilize nitrate, sulphate, iron (III) hydroxide or iron (II/III) oxide as electron acceptors. The strain cannot ferment glucose. Major fatty acids are C 16:1 ω7 c and C 18:1 ω7 c. The respiratory quinone is ubiquinone.
 The type strain, A1 T, (=NBRC 111848 T =DSM 103917 T), was isolated from a highly alkaline serpentinizing spring (Barnes Spring 1) in The Cedars located in north California, USA.
description: Published as part of Bird, Lina J., Kuenen, J. Gijs, Osburn, Magdalena R., Tomioka, Naotaka, Ishii, Shun'ichi, Barr, Casey, Nealson, Kenneth H. & Suzuki, Shino, 2021, Serpentinimonas gen. nov., Serpentinimonas raichei sp. nov., Serpentinimonas barnesii sp. nov. and Serpentinimonas maccroryi sp. nov., hyperalkaliphilic and facultative autotrophic bacteria isolated from terrestrial serpentinizing springs, pp. 1-10 in International Journal of Systematic and Evolutionary Microbiology (004945) (004945) 71 (8) on page 8, DOI: 10.1099/ijsem.0.004945, http://zenodo.org/record/6224170
Additional file 1 of Genomic and transcriptomic insights into Raffaelea lauricola pathogenesis
Creators: name: Zhang, Yucheng
name: Zhang, Junli
name: Vanderpool, Dan
name: Smith, Jason A.
name: Rollins, Jeffrey A.
Publisher: name: figshare
Year: 2020
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Plant Biology

description: Additional file 1: Supplemental Figure S1. Bioinformatic pipeline utilized for Raffaelea lauricola and R. aguacate genome assembly and gene prediction.
Recovery of cobalt ios from diluted solutions by means of protonated dry alginate beads
Creators: name: Aracena, Alvaro
name: Padilla, Sebastián
name: Jerez, Oscar
Publisher: name: Faculty of Geoengineering, Mining and Geology, Wrocław University of Technology, Wrocław
Year: 2019
Subjects: alginate beads, cobalt ions, Recovery mechanism, kinetic adsorption model, elution

description: Physicochemical Problems of Mineral Processing; ISSN 2084-4735
Etude et Application d’un Système de Communication M2M
Creators: name: Djehaiche, Rania
Publisher: name: figshare
Year: 2021
Subjects: subject: 100510 Wireless Communications
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: Notre projet consiste à réaliser un système de communication M2M dans une application domotique qui est la maison intelligente à base d’une plateforme Arduino/Android. Ce système est divisé en trois parties faisant appel à des compétences en Télécommunications, en Electronique, et en Informatique. La première partie se focalise sur les différents protocoles et réseaux de communication, la deuxième sur la création et l’implémentation du système en vue de le rendre commandable. La troisième partie traite de la programmation du système avec les modules utilisés (Capteur, Module Bluetooth ...). Pour cela nous avons réalisé une maquette électronique sur laquelle on a intégré notre système pour avoir un aperçu réel. Notre système accompli plusieurs tâches et fonctionnalités que doit fournir une maison intelligente (système d’alarme, porte automatique, Eclairage, détection du Gaz et des incendies, l’acquisition de la temperature,etc …). Tous ces systèmes vont être contrôlés par un simple Smartphone grâce à une application mobile. Cette solution permet de piloter l’habitat à distance, ainsi il assure la sureté et le confort dans la maison.
Finding needles in haystacks: An application of the R Shiny framework to gene hunting in lists of variants
Creators: name: Wöste, Marius
name: Emich, Jana
name: Friedrich, Corinna
name: Tüttelmann, Frank
name: Dugas, Martin
Publisher: name: F1000 Research Limited
Year: 2019

description: Genetic variants are commonly prioritised based on pathogenity scores such as the Combined Annotation Dependent Depletion (CADD) score, allele frequencies in variant databases like the Genome Aggregation Database (gnomAD) or functional effect predictions by tools such as SnpEff. In addition to these metrics, metadata about affected genes is still commonly looked up manually, thus rendering variant prioritisation a cumbersome and time-consuming task.

We developed Haystack: a web application to streamline the search for disease-related genes in our in-house variant database Sciobase. Haystack provides variant filtering capabilities based on our databases’ columns and integrates 12 728 gene descriptions from the Reference Sequence (RefSeq) database, 1 687 962 gene expression values from the Genotype-Tissue Expression (GTEx) project and the Human Protein Atlas (HPA), and 465 584 genotype-phenotype associations from the Mammalian Phenotype Ontology (MPO).

In a first project, we used Haystack to determine genes linked to male infertility in a whole exome sequencing dataset of 198 patients affected by complete germ cell loss (Sertoli cell-only syndrome). Using the features provided by Haystack, variants were filtered by minor allele frequencies in public databases, predicted severe consequences on protein structure and tissue expression in testis, resulting in 683 candidate genes for further analyses.
Improving characterisation of cancer patients by consensus independent component analysis of tumour transcriptomes
Creators: name: Nazarov, Petr
name: Eveno, Thomas
name: Chepeleva, Maryna
name: Kaoma, Tony
name: Muller, Arnaud
name: Azuaje, Francisco
Publisher: name: F1000 Research Limited
Year: 2019

description: Background. The majority of tumour samples collected from patients and studied by high-throughput transcriptomics are heterogeneous at three levels. First, bulk samples contain a mixture of several cell types, with proportions that are difficult to control. Second, cancers naturally develop inter and intra-tumour heterogeneity of malignant cells. Third, the evolving technology may introduce technical biases and limit comparison of data originated from new patients to large publicly available datasets, such as TCGA.

Method. We recently proposed to use a data-driven deconvolution method – consensus independent component analysis (ICA) to decompose heterogeneous transcriptomics data and extract features suitable for patient diagnostics and prognostics. The method separates biologically relevant transcriptional signals from technical effects and provides information about cellular composition and biological processes. We applied this method to RNA-seq data originated from several studies on patients with skin cutaneous melanoma (SKCM), brain tumours: glioblastoma (GBM) and low-grade gliomas (LGG), and non-small cell lung cancers: squamous cell carcinoma (LUSC) and adenocarcinoma (LUAD). We investigated the stability of the deconvolution method using TCGA datasets and validated the approach on independent public and in-house datasets from patients with corresponding tumours.

Results. The proposed method efficiently cleans the data from technical biases and allows making diagnostic and prognostic conclusions about the new patients using TCGA datasets as references. In case of brain and lung tumours, we validated classification on independent cohorts of patients obtaining high accuracy of classification between tumour subtypes. ICA showed accuracy at least comparable to other, task-specific feature selection methods. We also were able to build a survival predictor score that showed a strong significance on independent melanoma (pv=1.3e-3, 44 new samples) and glioma (pv=3.4e-18, 352 new samples) datasets. In addition, the method provided information about biological processes activated in the new patient tumours. It was used to stratify and estimate tumour and stroma-specific signals.
Mine rock guidelines : an overview
Creators: name: Sinclair, L. S.
Publisher: name: The University of British Columbia
Year: 2009

description: The identification of low pH waters seeping from a uranium mine waste rock dump in northern Saskatchewan initiated the investigation into the potential for acid mine drainage conditions to exist at the mines in northern Saskatchewan. Studies conducted by the companies operating in the province and the Saskatchewan Environment and Public Safety Mineral Industry Environmental Protection Branch (MIEPB) identified acidic seeps at each of the mining operations. Once identified the question asked was, "how do we assess the problem?". To be consistent in the approach to assessing the problem the MIEPB decided to publish a guideline that would be a reference manual for the mining companies, government agencies and other interest groups. To ensure that the manual was current the MIEPB contracted a consulting firm to, under the direction of the MIEPB, write the document. The most important criteria that the consultant had to meet was that of producing a document that was not a text book but rather a "hands-on" users manual. If success can be measured in numbers then the over two hundred and fifty requests that we have had for the Guidelines would indicate to us that the Guidelines are a success.
title: ActiVibe: Using a Vibration Sensor for Activity Recognition
Creators: name: Gordon, Dawud
name: Zengen, Georg
name: Beigl, Michael
Publisher: name: Universitätsbibliothek Braunschweig
Year: 2009
Subjects: subject: Activity recognition
subject: Ball switch
subject: Vibration sensor
subject: Context recognition
subject: Machine Learning
subject: Pattern Matching
subject: ktivitätserkennung
subject: Ballswitch
subject: Vibrationssensor
subject: Kontexterkennung
subject: Maschinelles Lernen
subject: Mustererkennung
subject: 000

description: This paper introduces a new approach to activity recognition using a novel sensor: the micro-vibrational sensor. The sensor is a miniaturized ball switch with a very high sensitivity which in some circumstances is as decisive as an accelerometer as to specific activities. The sensor is worn in parallel with an acceleration sensor in order to exactly determine its capabilities and the results are compared with other accelerometer-based activity recognition implementations. A substantially lower price, smaller device size, very competitive classification percentage possibilities and power consumption many times less than accelerometers make this sensor very attractive. This paper explores the properties of both sensors as context recognition tools and examines the vibration sensor as an advantageous replacement for the accelerometer in existing activity recognition applications in energy-conscious applications.
A generalisation of the honeycomb dimer model to higher dimensions
Creators: name: Lammers, Piet
Publisher: name: arXiv
Year: 2019
Subjects: subject: Probability (math.PR)
subject: FOS: Mathematics
subject: 82B41, 60K35 (Primary) 60F10 (Secondary)

description: Linde, Moore, and Nordahl introduced a generalisation of the honeycomb dimer model to higher dimensions. The purpose of this article is to describe a number of structural properties of this generalised model. First, it is shown that the samples of the model are in one-to-one correspondence with the perfect matchings of a hypergraph. This leads to a generalised Kasteleyn theory: the partition function of the model equals the Cayley hyperdeterminant of the adjacency hypermatrix of the hypergraph. Second, we prove an identity which relates the covariance matrix of the random height function directly to the random geometrical structure of the model. This identity is known in the planar case but is new for higher dimensions. It relies on a more explicit formulation of Sheffield's cluster swap which is made possible by the structure of the honeycomb dimer model. Finally, we use the special properties of this explicit cluster swap to give a new and simplified proof of strict convexity of the surface tension in this case.
description: 32 pages, 4 figures; optimised presentation
The integration of variable generation and storage into electricity capacity markets
Creators: name: Zachary, Stan
name: Wilson, Amy
name: Dent, Chris
Publisher: name: arXiv
Year: 2019
Subjects: subject: Optimization and Control (math.OC)
subject: FOS: Mathematics

description: We show how to value both variable generation and energy storage to enable them to be integrated fairly and optimally into electricity capacity markets. We develop theory based on balancing expected energy unserved against costs of capacity procurement, and in which the optimal procurement is that necessary to meet an appropriate reliability standard. For conventional generation the theory reduces to that already in common use. Further the valuation of both variable generation and storage coincides with the traditional risk-based approach based on equivalent firm capacity. The determination of the equivalent firm capacity of storage requires particular care; this is due both to the flexibility with which storage added to an existing system may be scheduled, and also because, when any resource is added to an existing system, storage already within that system may be flexibly rescheduled. We illustrate the theory with an example based on the GB system.
description: To appear in The Energy Journal
Materials Physics and Spin Glasses
Creators: name: Sherrington, David
Publisher: name: arXiv
Year: 2019
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Comparisons and analogies are drawn between materials ferroic glasses and conventional spin glasses, in terms of both experiment and theoretical modelling, with inter-system conceptual transfers leading to suggestions of further issues to investigate.
Serpentinimonas barnesii Bird & Kuenen & Osburn & Tomioka & Ishii & Barr & Nealson & Suzuki 2021, SP. NOV.
Creators: name: Bird, Lina J.
name: Kuenen, J. Gijs
name: Osburn, Magdalena R.
name: Tomioka, Naotaka
name: Ishii, Shun'ichi
name: Barr, Casey
name: Nealson, Kenneth H.
name: Suzuki, Shino
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Bacteria
Proteobacteria
Gammaproteobacteria
Burkholderiales
Burkholderiaceae
Serpentinimonas
Serpentinimonas barnesii

description: DESCRIPTION OF SERPENTINIMONAS BARNESII SP. NOV.
 Serpentinimonas barnesii (bar.ne′ si.i. N.L. gen. n. barnesii, named after I. Barnes, geochemist and first describer of The Cedars serpentinization site).
 In addition to the characteristics given above in the genus description, the type strain has the characteristics described below. Growth occurs at 18–37 °C and pH 9.0–12.0 with optimal growth at 30 °C and pH 11.0. NaCl ranges from 0 to 0.5g l−1. The DNA G+C composition of the type strain is 66.7mol% (determined from the genome). The strain grows autotrophically with hydrogen gas and calcium carbonate and heterotrophically on acetate, butyrate, lactate, pyruvate, ethanol and fumarate under microaerophilic conditions. The strain can ferment glucose. The strain is also able to utilize glucose as an electron donor, and nitrate as an electron acceptor. Major fatty acids are C 16:0 and C 18:1 ω7 c. The respiratory quinone is ubiquinone.
 The type strain, H1 T (=NBRC 111849 T =DSM 103920 T), was isolated from a highly alkaline serpentinizing spring (Barnes Spring 5) in The Cedars located in north California, USA.
description: Published as part of Bird, Lina J., Kuenen, J. Gijs, Osburn, Magdalena R., Tomioka, Naotaka, Ishii, Shun'ichi, Barr, Casey, Nealson, Kenneth H. & Suzuki, Shino, 2021, Serpentinimonas gen. nov., Serpentinimonas raichei sp. nov., Serpentinimonas barnesii sp. nov. and Serpentinimonas maccroryi sp. nov., hyperalkaliphilic and facultative autotrophic bacteria isolated from terrestrial serpentinizing springs, pp. 1-10 in International Journal of Systematic and Evolutionary Microbiology (004945) (004945) 71 (8) on pages 8-9, DOI: 10.1099/ijsem.0.004945, http://zenodo.org/record/6224170
Serpentinimonas maccroryi Bird & Kuenen & Osburn & Tomioka & Ishii & Barr & Nealson & Suzuki 2021, SP. NOV.
Creators: name: Bird, Lina J.
name: Kuenen, J. Gijs
name: Osburn, Magdalena R.
name: Tomioka, Naotaka
name: Ishii, Shun'ichi
name: Barr, Casey
name: Nealson, Kenneth H.
name: Suzuki, Shino
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Bacteria
Proteobacteria
Gammaproteobacteria
Burkholderiales
Burkholderiaceae
Serpentinimonas
Serpentinimonas maccroryi

description: DESCRIPTION OF SERPENTINIMONAS MACCRORYI SP. NOV.
 Serpentinimonas maccroryi (mac.cro′ ry.i. N.L. gen. n. maccroryi, named after D. McCrory, one of the owners of The Cedars nature reserve).
 In addition to the characteristics given above in the genus description, the type strain has the characteristics described below. Growth occurs at 18–37°C and pH 9.0–12.5 with optimal growth at 30 °C and pH 11.0. The strain tolerates NaCl ranges from 0 to 0.5 g l−1. The DNA G+C composition of the type strain is 66.7mol% (determined from the genome). The strain grows autotrophically on formate and hydrogen gas but not on thiosulfate under microaerophilic conditions. The strain can use nitrate, but not thiosulfate as an electron acceptor. The strain can ferment glucose and grow heterotrophically on acetate, butyrate, lactate, pyruvate, ethanol, glucose and fumarate. Major fatty acids are C 16:0, C 16:1 ω7 c and C 18:1 ω7 c. The respiratory quinone is ubiquinone.
 The type strain, B1 T (=NBRC 111850 T =DSM 103919 T), was isolated from a highly alkaline serpentinizing spring (Barnes Spring 1) in The Cedars located in north California, USA.
description: Published as part of Bird, Lina J., Kuenen, J. Gijs, Osburn, Magdalena R., Tomioka, Naotaka, Ishii, Shun'ichi, Barr, Casey, Nealson, Kenneth H. & Suzuki, Shino, 2021, Serpentinimonas gen. nov., Serpentinimonas raichei sp. nov., Serpentinimonas barnesii sp. nov. and Serpentinimonas maccroryi sp. nov., hyperalkaliphilic and facultative autotrophic bacteria isolated from terrestrial serpentinizing springs, pp. 1-10 in International Journal of Systematic and Evolutionary Microbiology (004945) (004945) 71 (8) on page 9, DOI: 10.1099/ijsem.0.004945, http://zenodo.org/record/6224170