cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 6: of Machine learning enables detection of early-stage colorectal cancer by whole-genome sequencing of plasma cell-free DNA
Creators: name: Wan, Nathan
name: Weinberg, David
name: Tzu-Yu Liu
name: Niehaus, Katherine
name: Ariazi, Eric
name: Delubac, Daniel
name: Kannan, Ajay
name: White, Brandon
name: Bailey, Mitch
name: Bertin, Marvin
name: Boley, Nathan
name: Bowen, Derek
name: Cregg, James
name: Drake, Adam
name: Ennis, Riley
name: Fransen, Signe
name: Gafni, Erik
name: Hansen, Loren
name: Yaping Liu
name: Otte, Gabriel
name: Pecson, Jennifer
name: Rice, Brandon
name: Sanderson, Gabriel
name: Aarushi Sharma
name: John, John St.
name: Tang, Catherina
name: Tzou, Abraham
name: Young, Leilani
name: Girish Putcha
name: Haque, Imran
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Cancer
subject: 60506 Virology

description: Table S1. Mean and standard deviation of the number of samples (both in and out of the IU age range) per fold for each CV procedure. SDâ =â standard deviation. (DOCX 16 kb)
A scoping review of the concept of resilience among African American women
Creators: name: Robinson, Millicent N
name: Conklin, Jamie
name: Hood, Darryl B
name: Warren, Barbara J
name: Dodd, Adam
name: Wight, Kathy D
name: Bey, Ganga
name: Woods-Giscombe, Cheryl L
name: Felix, Ashley S
name: Anderson, Avery M
name: Frazier, Taleah
name: Williams, Karen Patricia
name: Anderson, Cindy M
name: Bravo, Lilian
Publisher: name: Elsevier
Year: 2023

description:
Resilience, thriving in the face of adversity, is a critical component of well-being in African American women. However, traditional definitions and approaches to operationalize resilience may not capture race- and gender-related resilience experiences of African American women. A more complete conceptualization of resilience may help facilitate future investigation of the mechanisms through which resilience influences health in this group. Our team conducted a scoping review of the literature published during twenty years, between 2000 and 2019, on resilience and health in African American women. We included a multidisciplinary set of databases (PubMed, CINAHL, PsycINFO, Scopus, Social Work Abstracts, Sociological Abstracts, Academic Search Premier). Using Covidence software a multi-step review process was conducted; 904 abstracts were initially screened for eligibility, 219 full-text studies were screened in stage two, and 22 remaining studies were reviewed for extraction. The studies reviewed revealed limitations of unidimensional approaches to conceptualizing/operationalizing resilience in African American women. The review highlighted culturally-relevant components of resilience including spirituality/religion, strength, survival, active coping, and social support. Findings highlight the importance of operationalizing resilience as a multidimensional construct so it can be optimally included in research designed to investigate the quality of life, cardiovascular risk, and other health outcomes in African American women.
Additional file 7: of Isolation and characterization of a new basal-like luminal progenitor in human breast tissue
Creators: name: Vasudeva Bhat
name: Lee-Wing, Victoria
name: Pingzhao Hu
name: Raouf, Afshin
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Table S2. List of genes uniquely regulated by NR1. (PDF 139 kb)
Autocorrelations in pulsar glitch waiting times and sizes
Creators: name: Carlin, Julian B.
name: Melatos, Andrew
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Among the five pulsars with the most recorded rotational glitches, only PSR J0534$+$2200 is found to have an autocorrelation between consecutive glitch sizes which differs significantly from zero (Spearman correlation coefficient $ρ=-0.46$, p-value $=0.046$). No statistically compelling autocorrelations between consecutive waiting times are found. The autocorrelation observations are interpreted within the framework of a predictive meta-model describing stress-release in terms of a state-dependent Poisson process. Specific combinations of size and waiting time autocorrelations are identified, alongside combinations of cross-correlations and size and waiting time distributions, that are allowed or excluded within the meta-model. For example, future observations of any "quasiperiodic" glitching pulsar, such as PSR J0537$-$6910, should not reveal a positive waiting time autocorrelation. The implications for microphysical models of the stress-release process driving pulsar glitches are discussed briefly.
description: 8 pages, 5 figures. MNRAS accepted
Tensor Renormalization Group Centered About a Core Tensor
Creators: name: Lan, Wangwei
name: Evenbly, Glen
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We propose a modified form of a tensor renormalization group algorithm for evaluating partition functions of classical statistical mechanical models on 2D lattices. This algorithm coarse-grains only the rows and columns of the lattice adjacent to a single core tensor at each step, such that the lattice size shrinks linearly with the number of coarse-graining steps as opposed to shrinking exponentially as in the usual tensor renormalization group (TRG). However, the cost of this new approach only scales as $O(χ^4)$ in terms of the bond dimension $χ$, significantly cheaper than the $O(χ^6)$ cost scaling of TRG, whereas numerical benchmarking indicates that both approaches have comparable accuracy for the same bond dimension $χ$. It follows that the new algorithm can allow for more accurate investigation of classical models on modestly sized lattices than is possible with standard TRG.
description: 7 pages, 7 figures. Appendices: 1 figure
Integrating a Community Advisory Board Into a Pragmatic Trial of Mindfulness for Chronic Low Back Pain.
Creators: name: Lawrence, Suzanne M
name: Barnhill, Jessica L
name: Baez, Jose E
name: Harr, Elondra D
name: Rodriguez, Ruth D
name: Morone, Natalia E
name: Roth, Isabel
Publisher: name: SAGE Publications
Year: 2024

description:
Background: To improve the implementation of clinical trial interventions, there is a need to facilitate communication between key stakeholders and research teams. Community Advisory Boards (CAB) bring together a range of stakeholders not historically included in the research process to inform and work collaboratively with research teams. Objective: To describe our procedures and processes for (1) integration of a CAB into a pragmatic clinical trial of a telehealth-delivered group mindfulness program for persons with chronic low back pain (cLBP) within primary care, and (2) for the rapid uptake and implementation of CAB recommendations. Methods: The CAB we convened includes persons with cLBP who have undergone the mindfulness intervention, health care system leadership, advocacy groups, and mindfulness experts. The CAB members underwent a two hour initial training that introduced the research process and the CAB's role as research partners. The CAB met monthly for 1 hour. We used the Lighting Report method to summarize meetings and share feedback with the research team. Results: The recommendations of the CAB during the first year they met were divided into recruitment, informed consent, and survey recommendations. The study website also was overhauled based on recommendations, including a more engaging first page with rotating images of nature and testimonials. The language on the website was edited to be more concise and participant-friendly. The CAB recommended talking points to discuss with participants during screening or informed consent about the benefits of participating in research. Conclusion: We established a CAB that represented diverse perspectives, organizations, and experience with cLBP and mindfulness. The differing perspectives of the CAB resulted in recommendations that the research team itself would not have decided on their own. The Lightning Reports were also an effective way to efficiently communicate the CAB recommendations to the research team.
Additional file 1 of Cancer-associated fibroblast-derived gene signatures determine prognosis in colon cancer patients
Creators: name: Herrera, Mercedes
name: Berral-González, Alberto
name: López-Cade, Igor
name: Galindo-Pumariño, Cristina
name: Bueno-Fortes, Santiago
name: Martín-Merino, Manuel
name: Carrato, Alfredo
name: Ocaña, Alberto
name: De La Pinta, Carolina
name: López-Alfonso, Ana
name: Peña, Cristina
name: García-Barberán, Vanesa
name: De Las Rivas, Javier
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 1. Material and Methods; Clinical and phenotypic characteristics of the colorectal cancer cohort of 1273 patients analyzed in this study.
Majorana Mass Zeroes from Triplet VEV without Majoron Problem
Creators: name: Frampton, Paul H.
name: Oh, Myoung C.
name: Yoshikawa, Tadashi
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: It is shown how to obtain recently-proposed two-zero Majorana mass textures in models with three Higgs triplets with small VEVs and a sufficiently massive triplet Majoron by using abelian discrete symmetries. It is briefly discussed how in SU(5) grand unification where the triplets occur in {\bf 15}'s the neutrino textures can be related to up- and down- quark mass textures.
description: 4 pages latex including one figure
Ichneumon confundor HEINRICH 1978
Creators: name: Riedel, Matthias
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Ichneumonidae
Ichneumon
Ichneumon confundor

description: Ichneumon confundor HEINRICH, 1978
M a t e r i a l e x a m i n e d: South Siberia, Southwestern Tannu-Ola mountain range, Sogly village, southwest Tuwa region, 2000 m, 1♀ 1-5.vii.2003, leg. Vastchenko (coll. Riedel).
 T a x o n o m i c a l r e m a r k This specimen slightly differs from the description of the holotype (HEINRICH, 1978: 27-28) by the less extensive red coloration: clypeus, malar space and gena black; inner orbits narrowly red. Mesoscutum completely black, subtegular ridge black; 3 rd tergite red, with black transverse bands in basal 1/5 and apical 1/5. Otherwise a typical specimen.
D i s t r i b u t i o n: Southern Siberia and Far East Russia.
description: Published as part of Riedel, Matthias, 2018, Contribution to the Siberian species of Ichneumon LINNAEUS (Hymenoptera, Ichneumonidae, Ichneumoninae), pp. 1509-1562 in Linzer biologische Beiträge 50 (2) on page 1515, DOI: 10.5281/zenodo.5274480
Barriers and facilitators to recruitment and retention of underrepresented racial and ethnic minoritized students to PhD programs in nursing: A qualitative descriptive study
Creators: name: Harris L.K.
name: Woods-Giscombe C.
name: Ledford A.
name: Rodgers S.
name: Bravo L.G.
name: Zaragoza S.
name: Emmanuel C.J.
name: Ikharo E.
name: Adynski G.I.
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2023

description:
Background: There is a global shortage of Doctor of Philosophy (PhD)-trained nurses, which is amplified among underrepresented racial and ethnic groups who are minoritized. Purpose: This study explores barriers and facilitators to recruiting under-represented racial-ethnic group who are minoritized (UREM) PhD nursing students, defined as African American, Black, American Indian, Alaskan Native, or Hispanic/Latinx. Methods: Using a qualitative descriptive design, interviews of 23 UREM PhD nursing students were analyzed with conventional content analysis. Discussion: Barriers to recruitment and retention included identifying students interested in a PhD, organizational culture of programs, student mental health, and lack of social support. Facilitators for recruitment and retention included less discrimination and microaggressions experienced by students, faculty from groups who are minoritized representation, and strong family support. These findings had implications for recruitment and retention and PhD programs in nursing can focus on the above key areas to better recuit and retain UREM students. Conclusion: Allocating funding to culturally tailored mental health resources, student scholarships, and increasing UREM members of faculty within PhD programs.
title: Design Supply Cycle for Inventory Management
Creators: name: Malindzakova, Marcela
name: Zimon, Dominik
Publisher: name: TEM Journal
Year: 2019

description: In each company within the application of the lean principle for the material flow area, the inventory management is essential. The subject of this paper is to describe the application of differentiated inventory management. Some businesses have a large number of warehouse items, and it is therefore necessary to identify and work with inventory information. In terms of logistics, it is important to take into account the general rule, which is to keep the amount of inventories at minimum, as well as, the principle of minimising any unnecessary waste. The main purpose of the inventory management is to determine which items are important for the company. The aim of the paper is to demonstrate that the implementation of inventory management could contribute to an increase of certain sales aspects of the company. This article applies a case study scenario in order to analyse a logistics company's sales records, from the sale of car components. The final parts the article provides a comparison of the improved situation within company, in terms of monitored sales parameters. The comparison includes parameters such as the number of deliveries, speed of delivery, and the number of distributed quantities before and after the implementation of differentiated inventory management model. Keywords –Inventory management, stock items, supply process, goods and materials.
Additional file 1 of Effect of Baihu and Guizhi decoction in acute gouty arthritis: study protocol for a randomized controlled trial
Creators: name: He, Yikun
name: Dai, Chaoran
name: Shen, Jiaying
name: Chen, Qianwen
name: Gao, Jiandong
name: Pan, Xin
name: Gan, Jing
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Additional file 1: SPIRIT 2013 checklist. Recommended items to address in a clinical trial protocol and related documents.
The Turing Way: Open Source and reproducibility in data science
Creators: name: Sharan, Malvika
Publisher: name: Zenodo
Year: 2021

description: This talk was given by Malvika Sharan at the first "Omics data generation and analysis group" meeting on 27 May 2021.
 This event was organised by Andrew Holding to bring together Turing Fellows who have a research interest in genomics, proteomics, transcriptomic, metabolomic technologies. https://eventbrite.co.uk/e/omics-data-generation-and-analysis-group-tickets-145274753699.
Relatable Medical Jargon? Examining Nonprofit Health Systems’ Communications For Female Consumers
Creators: name: Smith, Wesley
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2024

description:


Health care communicators have a unique responsibility to serve as translators and process improvement experts, making health care information easy to find, nderstand, and access for today’s consumers. The thesis project examines how three nonprofit health systems engage with consumers on their website, Facebook account, and Instagram account. The communication audit leveraged quantitative and qualitative processes to examine key themes of convenience, holistic care, humanization of health care, and health education. The findings resulted in nine key takeaways that serve as recommendations for health care public relations professionals to better tailor digital content for their target audiences. The takeaways include: Helping consumers take health care into their own hands by offering educational content and easy-to-use tools for scheduling; Approaching communications holistically, incorporating physical, mental, and spiritual components; Differentiating between brand guidelines and guiding principles for consistency and clarity across platforms; Caring for people at all stages of life; Making the brand easy to recognize through color; Finding ways to celebrate inclusion and belonging in a way that is authentic to the brand; Understanding where health education, especially on taboo topics, should fall in the marketing funnel; Using photos of people connected to the health system instead of stock photos; Providing engaging videos through the elimination of stock footage




 
Additional file 2 of Effect of Baihu and Guizhi decoction in acute gouty arthritis: study protocol for a randomized controlled trial
Creators: name: He, Yikun
name: Dai, Chaoran
name: Shen, Jiaying
name: Chen, Qianwen
name: Gao, Jiandong
name: Pan, Xin
name: Gan, Jing
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Additional file 2: Model informed consent form
Toritenum Dumitrica & Zügel 2003, n. gen.
Creators: name: Dumitrica, Paulian
name: Zügel, Peter
Publisher: name: Zenodo
Year: 2003
Subjects: Biodiversity
Taxonomy
Chromista
Radiozoa
Polycystina
Nassellaria
Tertoniidae
Toritenum

description: Genus Toritenum n. gen.
 TYPE SPECIES. — Toritenum hirsutum n. gen., n. sp.
 ETYMOLOGY. — The name is an anagram of the genus Tertonium n. gen. Neuter gender.
KNOWN RANGE. — Lower Pliensbachian to lower Tithonian.
DIAGNOSIS. — Test conical with or without a well developed apical horn, with the spines of the initial spicule not protruding. Thorax with a variable number of circumferential ridges separated by depressionary intervals bearing transverse rows of pores. Distal part of thorax widely open.
REMARKS
 This new genus resembles Tertonium n. gen. from which it only differs by not having the spines D, V, and the two L of the initial spicule extended outside. The genus is rather well represented in the lower Tithonian assemblage of sample Mue 22. A species assignable to this genus was illustrated by Takemura (1986), Hattori (1989), and Yao (1997) as Parvicingula (?) obesa Takemura, 1986 from probably Bajocian manganese concretions (Unuma echinatus Zone) of Japan. Another species was illustrated by Kiessling (1999: pl. 15, figs 1, 2) as Eucyrtidium (?) sp. from the lower Tithonian of Antarctic Peninsula, and the oldest but not yet described was found by us in the lower Pliensbachian fauna of Turkey partly studied by De Wever (1982).
description: Published as part of Dumitrica, Paulian & Zügel, Peter, 2003, Lower Tithonian mono- and dicyrtid Nassellaria (Radiolaria) from the Solnhofen area (southern Germany), pp. 5-72 in Geodiversitas 25 (1) on page 50, DOI: 10.5281/zenodo.5372196
SurfCon: Synonym Discovery on Privacy-Aware Clinical Data
Creators: name: Wang, Zhen
name: Yue, Xiang
name: Moosavinasab, Soheil
name: Huang, Yungui
name: Lin, Simon
name: Sun, Huan
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computation and Language (cs.CL)
subject: FOS: Computer and information sciences

description: Unstructured clinical texts contain rich health-related information. To better utilize the knowledge buried in clinical texts, discovering synonyms for a medical query term has become an important task. Recent automatic synonym discovery methods leveraging raw text information have been developed. However, to preserve patient privacy and security, it is usually quite difficult to get access to large-scale raw clinical texts. In this paper, we study a new setting named synonym discovery on privacy-aware clinical data (i.e., medical terms extracted from the clinical texts and their aggregated co-occurrence counts, without raw clinical texts). To solve the problem, we propose a new framework SurfCon that leverages two important types of information in the privacy-aware clinical data, i.e., the surface form information, and the global context information for synonym discovery. In particular, the surface form module enables us to detect synonyms that look similar while the global context module plays a complementary role to discover synonyms that are semantically similar but in different surface forms, and both allow us to deal with the OOV query issue (i.e., when the query is not found in the given data). We conduct extensive experiments and case studies on publicly available privacy-aware clinical data, and show that SurfCon can outperform strong baseline methods by large margins under various settings.
description: KDD 2019 (Accepted for Oral Presentation at the Research track)
Additional file 6: of Isolation and characterization of a new basal-like luminal progenitor in human breast tissue
Creators: name: Vasudeva Bhat
name: Lee-Wing, Victoria
name: Pingzhao Hu
name: Raouf, Afshin
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Table S1. List of genes uniquely regulated by NR3. (PDF 239 kb)
Reference Ultra Low DC Current Source (ULCS) Between 1 fA and 100 pA at TUBITAK UME
Creators: name: Erkan, Omer
name: Gulmez, Yakup
name: Hayirli, Cem
name: Gulmez, Gulay
name: Turhan, Enis
Publisher: name: arXiv
Year: 2019
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: FOS: Physical sciences

description: In this paper, we present a programmable Ultra Low DC Current Source (ULCS) developed at TÜBİTAK UME. The output current range is from 1 fA up to 100 pA with 100 aA resolution and is directly traceable to DC voltage, capacitance and time units. The principle of the device is based on applying a linear ramp voltage on standard capacitors with values between 1 pF and 1000 pF. These standard capacitors are commercial standard capacitors which are kept in a temperature controlled insulated box. Linear ramp voltage is generated using a commercial DAQ card. Current source device is fully automated with computer control and can be used to generate any currents with 100 aA resolution in its full range. The uncertainty is 2.5 mA/A at 1 fA current.
description: 8 pages, 12 figures. Extended version of CPEM 2018 conference paper. Special Issue on Transactions on Instrumentation and Measurement
Properties of the Konishi multiplet in N=4 SYM theory
Creators: name: Bianchi, Massimo
name: Kovacs, Stefano
name: Rossi, Giancarlo
name: Stanev, Yassen S.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We study perturbative and non-perturbative properties of the Konishi multiplet in N=4 SYM theory in D=4 dimensions. We compute two-, three- and four-point Green functions with single and multiple insertions of the lowest component of the multiplet, and of the lowest component of the supercurrent multiplet. These computations require a proper definition of the renormalized operator and lead to an independent derivation of its anomalous dimension. The O(g^2) value found in this way is in agreement with previous results. We also find that instanton contributions to the above correlators vanish. From our results we are able to identify some of the lowest dimensional gauge-invariant composite operators contributing to the OPE of the correlation functions we have computed. We thus confirm the existence of an operator belonging to the representation 20', which has vanishing anomalous dimension at order g^2 and g^4 in perturbation theory as well as at the non-perturbative level, despite the fact that it does not obey any of the known shortening conditions.
description: 23 pages, latex, no figures
Deep Q Learning Driven CT Pancreas Segmentation with Geometry-Aware U-Net
Creators: name: Man, Yunze
name: Huang, Yangsibo
name: Feng, Junyi
name: Li, Xi
name: Wu, Fei
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: Segmentation of pancreas is important for medical image analysis, yet it faces great challenges of class imbalance, background distractions and non-rigid geometrical features. To address these difficulties, we introduce a Deep Q Network(DQN) driven approach with deformable U-Net to accurately segment the pancreas by explicitly interacting with contextual information and extract anisotropic features from pancreas. The DQN based model learns a context-adaptive localization policy to produce a visually tightened and precise localization bounding box of the pancreas. Furthermore, deformable U-Net captures geometry-aware information of pancreas by learning geometrically deformable filters for feature extraction. Experiments on NIH dataset validate the effectiveness of the proposed framework in pancreas segmentation.
description: in IEEE Transactions on Medical Imaging (2019)
Ultranaporidae Pessagno 1977
Creators: name: Dumitrica, Paulian
name: Zügel, Peter
Publisher: name: Zenodo
Year: 2003
Subjects: Biodiversity
Taxonomy
Chromista
Radiozoa
Polycystina
Nassellaria
Ultranaporidae

description: Family ULTRANAPORIDAE Pessagno, 1977   TYPE GENUS. — Ultranapora Pessagno, 1977.
description: Published as part of Dumitrica, Paulian & Zügel, Peter, 2003, Lower Tithonian mono- and dicyrtid Nassellaria (Radiolaria) from the Solnhofen area (southern Germany), pp. 5-72 in Geodiversitas 25 (1) on page 52, DOI: 10.5281/zenodo.5372196
Additional file 1: of Trends in resistant Enterobacteriaceae and Acinetobacter species in hospitalized patients in the United States: 2013â 2017
Creators: name: Gupta, Vikas
name: Ye, Gang
name: Olesky, Melanie
name: Lawrence, Kenneth
name: Murray, John
name: Kalvin Yu
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Ecology
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Marine Biology
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: Specific antibiotics for multidrug resistance. (DOCX 18 kb)
Drawing People In Journalism's Role in the Relationship Between Art and Community
Creators: name: Korynta, Emma
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2024

description:
This thesis explores the role journalism plays in the relationship between art and community. This is done through a literature review followed by interviews with five journalists, seven artists, and eight community organizers — some of whom are also artists. Each transcript


was processed through thematic analysis to identify the key concerns and ideas shared. The


top subjects explored included the importance of and need to increase community engagement


with art and artists, the value news exposure can have to widen artists’ audience, the efforts that


alternative news sources like independent newspapers have made to consistently and robustly


cover the arts, and the expectations of journalists and newsrooms to dig deeper into their arts


coverage beyond surface-level profile stories. The codes and themes discovered in the thematic


analysis were used to create three long-form feature articles discussing the dynamic between


journalism, art, and community, with a focus on each perspective of the dynamic.
Building a collaborative guide to ethical data science
Creators: name: Carter, Laura
name: Sharan, Malvika
Publisher: name: Zenodo
Year: 2021

description: RightsCon 2021: Lightning Talk/Tech Demo - Session Concept submitted under Human Rights-centred Design: This category fosters discussion on technology design, tool development, and user education and experience. It also covers openness and accessibility, community-driven innovation, co-design processes, and user research that supports and prioritizes human rights principles. Title:  The Turing Way: Building a collaborative guide to ethical data science Abstract Data scientists make data-driven decisions throughout the lifecycle of their projects. It is their duty to ensure that their work maintains a high level of moral integrity as well as the highest scientific standards, especially, when it impacts people’s lives. In this presentation, we will introduce The Turing Way, an open source book project that involves and supports its diverse community in developing and sharing resources that make data science reproducible, ethical, collaborative and inclusive. In particular, we will demonstrate the Turing Way guide for Ethical Research, the community behind its development, and its human rights-centred approach to data science ethics as a practice that includes activism for change. Most importantly, we will demonstrate how RightsCon attendees can get involved! Speakers: Primary contact: Laura Carter  Laura is a human rights researcher who is one of the Ethics Guide collaborators: as well as developing content that is practical and accessible for data researchers, she also guides new contributors as a new open science contributor herself! Secondary contact: Malvika Sharan Malvika is the Community Manager of The Turing Way. She is based at The Alan Turing Institute in the United Kingdom and brings her extensive experience in open science and collaboration to a global community spanning 6 continents.
Topological Crystalline Superconductivity in Dirac Semimetal Phase of Iron-based Superconductors
Creators: name: Kawakami, Takuto
name: Sato, Masatoshi
Publisher: name: arXiv
Year: 2019
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: In iron-based superconductors, band inversion of $d$- and $p$-orbitals yields Dirac semimetallic states. We theoretically investigate their topological properties in normal and superconducting phases, based on the tight-binding model involving full symmetry of the materials. We demonstrate that a Cooper pair between electrons with $d$- and $p$-orbitals relevant to the band structure yields odd-parity superconductivity. Moreover, we present the typical surface states by solving the Bogoliubov-de Gennes equation and characterize them by topological invariants defined with crystal symmetry. It is found that there appear various types of Majorana fermions such as surface flat band, Majorana quartet and Möbius twisted surface state. Our theoretical results show that iron-based superconductors are promising platforms to realize rich topological crystalline phases.
description: 9 pages, 6 figures
Large-scale Correlation of Mass and Galaxies with the Lyman-alpha Forest Transmitted Flux
Creators: name: McDonald, Patrick
name: Miralda-Escudé, Jordi
name: Cen, Renyue
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present predictions of the correlation between the Lyman-alpha forest absorption in quasar spectra and the mass within \sim 5 Mpc/h (comoving) of the line of sight, using fully hydrodynamic and hydro-PM numerical simulations of the cold dark matter model supported by present observations. The observed correlation based on galaxies and the Lya forest can be directly compared to our theoretical results, assuming that galaxies are linearly biased on large scales. Specifically, we predict the average value of the mass fluctuation, , conditioned to a fixed value of the Lya forest transmitted flux delta_F, after they have been smoothed over a 10 Mpc/h cube and line of sight interval, respectively. We find that /sigma_m as a function of delta_F/sigma_F has a slope of 0.6 at this smoothing scale, where sigma_m and sigma_F are the rms dispersions (this slope should decrease with the smoothing scale). We show that this value is largely insensitive to the cosmological model and other Lya forest parameters. Comparison of our predictions to observations should provide a fundamental test of our ideas on the nature of the Lya forest and the distribution of galaxies, and can yield a measurement of the bias factor of any type of galaxies that are observed in the vicinity of Lya forest lines of sight.
description: Submitted to ApJ, 41 pages
A state space approach to dynamic modeling of mouse-tracking data
Creators: name: Calcagnì, Antonio
name: Lombardi, Luigi
name: D'Alessandro, Marco
Publisher: name: arXiv
Year: 2019
Subjects: subject: Applications (stat.AP)
subject: Computation (stat.CO)
subject: FOS: Computer and information sciences
subject: 62M10, 60G35, 62M05, 62P15

description: Mouse-tracking recording techniques are becoming very attractive in experimental psychology. They provide an effective means of enhancing the measurement of some real-time cognitive processes involved in categorization, decision-making, and lexical decision tasks. Mouse-tracking data are commonly analysed using a two-step procedure which first summarizes individuals' hand trajectories with independent measures, and then applies standard statistical models on them. However, this approach can be problematic in many cases. In particular, it does not provide a direct way to capitalize the richness of hand movement variability within a consistent and unified representation. In this article we present a novel, unified framework for mouse-tracking data. Unlike standard approaches to mouse-tracking, our proposal uses stochastic state-space modeling to represent the observed trajectories in terms of both individual movement dynamics and experimental variables. The model is estimated via a Metropolis-Hastings algorithm coupled with a non-linear recursive filter. The characteristics and potentials of the proposed approach are illustrated using a lexical decision case study. The results highlighted how dynamic modeling of mouse-tracking data can considerably improve the analysis of mouse-tracking tasks and the conclusions researchers can draw from them.
description: The manuscript consists of 29 pages, 10 figures, and 5 tables. It also contains Supplementary Materials (10 pages, 8 figures, and 3 tables) providing extended results along with a simulation study
Ichneumon exilicornis W ESMAEL 1857
Creators: name: Riedel, Matthias
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Ichneumonidae
Ichneumon
Ichneumon exilicornis

description: Ichneumon exilicornis W ESMAEL, 1857
M a t e r i a l e x a m i n e d: Southwest Siberia, Orenburg region, Ilek surrounds, 1♀ 1- 5.viii.2005, leg. Osipov (coll. Riedel).
D i s t r i b u t i o n: Known from the Western Palaearctic region, new record for Siberia.
description: Published as part of Riedel, Matthias, 2018, Contribution to the Siberian species of Ichneumon LINNAEUS (Hymenoptera, Ichneumonidae, Ichneumoninae), pp. 1509-1562 in Linzer biologische Beiträge 50 (2) on page 1515, DOI: 10.5281/zenodo.5274480
Discovery of water vapor megamaser emission from Mrk1419 (NGC 2690): An analogue of NGC 4258?
Creators: name: Henkel, C.
name: Braatz, J. A.
name: Greenhill, L. J.
name: Wilson, A. S.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Water vapor emission at 22 GHz is reported from the nucleus of the LINER galaxy Mrk 1419 (NGC 2960). Single-dish spectra of the maser source show properties that are similar to those seen in NGC 4258, namely (1) a cluster of systemic H2O features, (2) two additional H2O clusters, one red- and one blue-shifted by about 475 km/s, (3) a likely acceleration of the systemic features, and (4) no detectable velocity drifts in the red- and blue-shifted features. Interpreting the data in terms of the paradigm established for NGC 4258, i.e. assuming the presence of an edge-on Keplerian circumnuclear annulus with the systemic emission arising from the near side of its inner edge, the following parameters are derived: Rotational velocity: 330-600 km/s; radius: 0.13-0.43 pc; binding mass: about 10 million solar masses. With the galaxy being approximately ten times farther away than NGC 4258, a comparison of linear and angular scales (the latter via Very Long Baseline Interferometry) may provide an accurate geometric distance to Mrk 1419 that could be used to calibrate the cosmic distance scale.
description: 4 pages, 5 Postscript figures, A&A Letters
Additional file 5: of Machine learning enables detection of early-stage colorectal cancer by whole-genome sequencing of plasma cell-free DNA
Creators: name: Wan, Nathan
name: Weinberg, David
name: Tzu-Yu Liu
name: Niehaus, Katherine
name: Ariazi, Eric
name: Delubac, Daniel
name: Kannan, Ajay
name: White, Brandon
name: Bailey, Mitch
name: Bertin, Marvin
name: Boley, Nathan
name: Bowen, Derek
name: Cregg, James
name: Drake, Adam
name: Ennis, Riley
name: Fransen, Signe
name: Gafni, Erik
name: Hansen, Loren
name: Yaping Liu
name: Otte, Gabriel
name: Pecson, Jennifer
name: Rice, Brandon
name: Sanderson, Gabriel
name: Aarushi Sharma
name: John, John St.
name: Tang, Catherina
name: Tzou, Abraham
name: Young, Leilani
name: Girish Putcha
name: Haque, Imran
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer

description: Figure S4. Non-linear relationship between the total number of samples used for training and sensitivity at 85% specificity for colorectal cancer detection. The method was trained again with k-fold, except the number of training samples per fold was downsampled. The lower numbers are comparable to those available for balanced k-batch and were used to investigate decreased classifier performance due to smaller sample sizes in training. (DOCX 60 kb)
Additional file 7 of Cancer-associated fibroblast-derived gene signatures determine prognosis in colon cancer patients
Creators: name: Herrera, Mercedes
name: Berral-González, Alberto
name: López-Cade, Igor
name: Galindo-Pumariño, Cristina
name: Bueno-Fortes, Santiago
name: Martín-Merino, Manuel
name: Carrato, Alfredo
name: Ocaña, Alberto
name: De La Pinta, Carolina
name: López-Alfonso, Ana
name: Peña, Cristina
name: García-Barberán, Vanesa
name: De Las Rivas, Javier
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 7. Survival analysis of colon cancer cohort including phenotypic factors: tumor stage and CMS. (A) Distribution of the patients at stages I & II versus III & IV clearly showed different prognoses. (B) CMS4 patients showed shorter survival than CMS1, CMS2 and CMS3 ones.
Moderate deviations and extinction of an epidemic
Creators: name: Pardoux, Etienne
Publisher: name: arXiv
Year: 2019
Subjects: subject: Probability (math.PR)
subject: FOS: Mathematics

description: Consider an epidemic model with a constant flux of susceptibles, in a situation where the corresponding deterministic epidemic model has a unique stable endemic equilibrium. For the associated stochastic model, whose law of large numbers limit is the deterministic model, the disease free equilibrium is an absorbing state, which is reached soon or later by the process. However, for a large population size, i.e. when the stochastic model is close to its deterministic limit, the time needed for the stochastic perturbations to stop the epidemic may be enormous. In this paper, we discuss how the Central Limit Theorem, Moderate and Large Deviations allow us to give estimates of the extinction time of the epidemic, depending upon the size of the population.
Napora Pessagno 1977
Creators: name: Dumitrica, Paulian
name: Zügel, Peter
Publisher: name: Zenodo
Year: 2003
Subjects: Biodiversity
Taxonomy
Chromista
Radiozoa
Polycystina
Nassellaria
Ultranaporidae
Napora

description: Genus Napora Pessagno, 1977
 Napora Pessagno, 1977a: 94.
 Jacus De Wever, 1982: 204; type species: Jacus coronatus De Wever, 1982.
 TYPE SPECIES. — Napora bukryi Pessagno, 1977; original designation.
RANGE. — Lower Jurassic to Upper Cretaceous.
REMARKS
 The study of the initial spicule of the species Napora modesta n. sp. in transmitted light showed that the cephalic initial skeleton consists of MB, V, A, two L, two l, D, and the arches VL, Ll, lD, Al. The arch AV is absent, but an arch AD seems to exist because one of the three blades of the apical horn has a dorsal direction.
 Genus Jacus De Wever, 1982 is herein considered a junior synonym of Napora. The differences between these two genera concern only the superficial structure of thorax, a character that can be considered of specific level. The absence of the cephalocone, considered by De Wever (1982) an additional distinctive character from Napora, has no value because in both genera it is nothing else than the short ventral spine. Moreover, both genera have the apical horn with a verticil of three spines or spinules as extensions of the three blades; exceptions are very rare. This is also a character that differentiates Napora and Jacus from Anaticapitula n. gen.
 Members of the genus Napora are among the most frequent dicyrtid nassellarians in the lower Tithonian radiolarian assemblage studied in the present article, although some species are very rare.
description: Published as part of Dumitrica, Paulian & Zügel, Peter, 2003, Lower Tithonian mono- and dicyrtid Nassellaria (Radiolaria) from the Solnhofen area (southern Germany), pp. 5-72 in Geodiversitas 25 (1) on page 57, DOI: 10.5281/zenodo.5372196
Ichneumon extensorius LINNAEUS 1758
Creators: name: Riedel, Matthias
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Ichneumonidae
Ichneumon
Ichneumon extensorius

description: Ichneumon extensorius LINNAEUS, 1758
M a t e r i a l e x a m i n e d: East Siberia, Lake Baikal near Anghasolka (overwintering), 35♀♀ 6.iv.2007, leg. Berlov (coll. Riedel).
D i s t r i b u t i o n: Palaearctic region, known from Siberia (KOKUJEV 1904).
description: Published as part of Riedel, Matthias, 2018, Contribution to the Siberian species of Ichneumon LINNAEUS (Hymenoptera, Ichneumonidae, Ichneumoninae), pp. 1509-1562 in Linzer biologische Beiträge 50 (2) on page 1515, DOI: 10.5281/zenodo.5274480
Community and Democracy in a Rural Virginia News Mirage
Creators: name: LeBlanc, Paul
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2024

description:
This thesis project examines America’s local news crisis through the lens of one rural


community, Culpeper County, Virginia. With a population around 52,000, Culpeper oers a


critical window into a citizenry underserved by local journalism.


The project culminated in a digital article, rooted in interviews with Culpeper’s citizens,


threadbare local news sta, and government ocials. Paired with expert voices in journalism,


misinformation and local news economics, it serves as a case study in how a waning local news


presence is aecting one county.


The eects of local news’ decline have, of course, been well documented on a national level.


Less common are reporting projects anchored in the people and communities aected by it,


whether they consider it an active predicament or not.
Consistent upper price bounds for exotic options given a finite number of call prices and their convergence
Creators: name: Bäuerle, Nicole
name: Schmithals, Daniel
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mathematical Finance (q-fin.MF)
subject: Optimization and Control (math.OC)
subject: FOS: Economics and business
subject: FOS: Mathematics
subject: 91G20

description: We consider the problem of finding a consistent upper price bound for exotic options whose payoff depends on the stock price at two different predetermined time points (e.g. Asian option), given a finite number of observed call prices for these maturities. A model-free approach is used, only taking into account that the (discounted) stock price process is a martingale under the no-arbitrage condition. In case the payoff is directionally convex we obtain the worst case marginal pricing measures. The speed of convergence of the upper price bound is determined when the number of observed stock prices increases. We illustrate our findings with some numerical computations.
An error indicator-based adaptive reduced order model for nonlinear structural mechanics -- application to high-pressure turbine blades
Creators: name: Casenave, Fabien
name: Akkari, Nissrine
Publisher: name: arXiv
Year: 2019
Subjects: subject: Numerical Analysis (math.NA)
subject: FOS: Mathematics

description: The industrial application motivating this work is the fatigue computation of aircraft engines' high-pressure turbine blades. The material model involves nonlinear elastoviscoplastic behavior laws, for which the parameters depend on the temperature. For this application, the temperature loading is not accurately known and can reach values relatively close to the creep temperature: important nonlinear effects occur and the solution strongly depends on the used thermal loading. We consider a nonlinear reduced order model able to compute, in the exploitation phase, the behavior of the blade for a new temperature field loading. The sensitivity of the solution to the temperature makes {the classical unenriched proper orthogonal decomposition method} fail. In this work, we propose a new error indicator, quantifying the error made by the reduced order model in computational complexity independent of the size of the high-fidelity reference model. In our framework, when the {error indicator} becomes larger than a given tolerance, the reduced order model is updated using one time step solution of the high-fidelity reference model. The approach is illustrated on a series of academic test cases and applied on a setting of industrial complexity involving 5 million degrees of freedom, where the whole procedure is computed in parallel with distributed memory.