cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Cognitive influences on perceived phonatory exertion using the Borg CR10
Creators: name: Mersbergen, Miriam Van
name: Vinney, Lisa A.
name: Payne, Alexis E.
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Marine Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Objectives: The purpose of the present study was to examine the nature of the relationship between perceptions of vocal and mental (cognitive) effort during reading and speaking tasks. Methods: One hundred and four young, healthy adult participants were randomized into one of three groups. Each group performed a writing task meant to elicit low mental effort, high mental effort, or high mental effort followed by a period of relaxation. Participants then engaged in reading and speaking tasks, meant to elicit high (suppression of a prepotent desire to speak louder) or low (no suppression of a prepotent desire to speak louder) mental effort, and completed ratings of mental effort and vocal effort via adapted versions of the Borg CR10. Results: Findings indicate that ratings of perceived mental and vocal effort are related to one another, evidenced by strong correlations, and additional analyses reveal that mental effort might drive this relationship. Conclusions: Perceptions of vocal effort appear to mirror ratings of mental effort during tasks for which vocal activity is relatively stable but cognitive demands fluctuate. The possibility that perceptions of mental effort might influence perceptions of vocal effort should be considered when creating reliable and valid measures of vocal effort as well as when interpreting currently adapted measures of vocal effort in the clinical context.
Adaptive Text Messaging for Postpartum Risky Drinking: Conceptual Model and Protocol for an Ecological Momentary Assessment Study
Creators: name: Dauber, S
name: Beacham, A
name: Hammond, C
name: West, A
name: Thrul, Johannes
Publisher: name: La Trobe
Year: 2022
Subjects: classificationCode: 420699
subject: Public health not elsewhere classified

description: Background: Risky drinking is prevalent among women of childbearing age. Although many women reduce their drinking during pregnancy, more than half return to prepregnancy levels during the early postpartum period. Risky drinking in new mothers may be associated with negative child and maternal health outcomes; however, new mothers are unlikely to seek treatment for risky drinking because of stigma and fear of child protective service involvement. SMS text messaging is a promising approach for reaching non–treatment-seeking new mothers at risk because of risky drinking. SMS text messaging interventions (TMIs) are empirically supported for alcohol use, but a tailored intervention for new mothers does not exist. This study aims to fill this gap by developing a just-in-time adaptive TMI for postpartum risky drinking. Objective: The objectives of this paper are to present a preliminary conceptual model of postpartum risky drinking and describe the protocol for conducting an ecological momentary assessment (EMA) study with new mothers to inform the refinement of the conceptual model and development of the TMI. Methods: This paper presents a preliminary conceptual model of postpartum risky drinking based on the motivational model of alcohol use, social cognitive theory, and temporal self-regulation theory. The model proposes three primary intervention targets: motivation, self-efficacy, and self-regulation. Theoretical and empirical literature in support of the conceptual model is described. The paper also describes procedures for a study that will collect EMA data from 30 participants recruited via social media and the perinatal Central Intake system of New Jersey. Following the baseline assessment, EMA surveys will be sent 5 times per day for 14 days. The assessment instruments and data analysis procedures are described. Results: Recruitment is scheduled to begin in January 2022 and is anticipated to conclude in March 2022. Study results are estimated to be published in July 2022. Conclusions: The study findings will enhance our understanding of daily and momentary fluctuations in risk and protective factors for risky drinking during the early postpartum period. The findings will be used to refine the conceptual model and inform the development of the TMI. The next steps for this work include the development of intervention components via an iterative participatory design process and testing of the resulting intervention in a pilot microrandomized trial.
Efficient Representation and Fusion of Hybrid Joint Densities for Clusters in Nonlinear Hybrid Bayesian Networks
Creators: name: Schrempf, Oliver C.
name: Hanselmann, Anne
name: Hanebeck, Uwe D.
Publisher: name: Karlsruhe
Year: 2006

description: Undirected cycles in Bayesian networks are often treated by using clustering methods. This results in networks with nodes characterized by joint probability densities instead of marginal densities. An efficient representation of these hybrid joint densities is essential especially in nonlinear hybrid net works containing continuous as well as discrete variables. In this article we present a unified representation of continuous, discrete, and hybrid joint densities. This representation is based on Gaussian and Dirac mixtures and allows for analytic evaluation of arbitrary hybrid networks without loosing structural in formation, even for networks containing clusters. Furthermore we derive update formulae for marginal and joint densities from a system theoretic point of view by treating a Bayesian network as a system of cascaded subsystems. Together with the presented mixture representation of densities this yields an exact analytic updating scheme.
Additional file 1 of What is the impact of active management on biodiversity in boreal and temperate forests set aside for conservation or restoration? A systematic map
Creators: name: Bernes, Claes
name: Jonsson, Bengt
name: Junninen, Kaisa
name: Lõhmus, Asko
name: Macdonald, Ellen
name: Müller, Jörg
name: Sandström, Jennie
Publisher: name: figshare
Year: 2020
Subjects: subject: Molecular Biology
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Additional file 1. Swedish perspectives on active management of forest set-asides.
title: ADCO, Cartulaire de l'abbaye de Saint-Seine (XIIIe siècle), Cart. 165 (10 H 6, ms. 139), 354 pages, f. 0223
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2009
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire
subject: Corpus Burgundiae Medii Aevi

description: Cartulaire de l'abbaye de Saint-Seine (XIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 165 (10 H 6, ms. 139), 354 pages, f. 0223, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de l'abbaye de Saint-Seine (XIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 165 (10 H 6, ms. 139), 354 pages, f. 0223, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Saint-Seine
description: Provenance: http://www.wikidata.org/entity/Q2820709
Additional file 3 of What is the impact of active management on biodiversity in boreal and temperate forests set aside for conservation or restoration? A systematic map
Creators: name: Bernes, Claes
name: Jonsson, Bengt
name: Junninen, Kaisa
name: Lõhmus, Asko
name: Macdonald, Ellen
name: Müller, Jörg
name: Sandström, Jennie
Publisher: name: figshare
Year: 2020
Subjects: subject: Molecular Biology
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: Computational Biology

description: Additional file 3. Full set of criteria for inclusion/exclusion of articles.
Observations of phase changes in monoolein during high viscous injection
Creators: name: Wells, Daniel
name: Berntsen, Peter
name: Balaur, Eugeniu
name: Kewish, Cameron
name: Adams, Patrick
name: Boutet, Sebastien
name: Broomhall, Hayden
name: Caleman, Carl
name: Christofferson, Andrew
name: Conn, Charlotte E
name: Dahlqvist, Caroline
name: Flueckiger, Leonie
name: Roque, Francisco Gian
name: Greaves, Tamar
name: Hejazian, Majid
name: Hunter, Mark
name: Hadian Jazi, Marjan
name: Jonsson, H Olof
name: Pathirannahalage, Sachini Kadaoluwa
name: Kirian, Richard
name: Kozlov, Alex
name: Kurta, Ruslan
name: Marman, Hugh
name: Mendez, Derek
name: Morgan, Andrew
name: Nugent, Keith
name: Oberthuer, Dominik
name: Quinney, Harry
name: Reinhardt, Juliane
name: Saha, Sumitra
name: Selberg, Jonas
name: Sierra, Raymond
name: Wiedorn, Max
name: Abbey, Brian
name: Andrew, Martin
name: Darmanin, Connie
Publisher: name: La Trobe
Year: 2022
Subjects: classificationCode: 519999
subject: Other physical sciences not elsewhere classified

description: Serial crystallography of membrane proteins often employs high-viscosity injectors (HVIs) to deliver micrometre-sized crystals to the X-ray beam. Typically, the carrier medium is a lipidic cubic phase (LCP) media, which can also be used to nucleate and grow the crystals. However, despite the fact that the LCP is widely used with HVIs, the potential impact of the injection process on the LCP structure has not been reported and hence is not yet well understood. The self-assembled structure of the LCP can be affected by pressure, dehydration and temperature changes, all of which occur during continuous flow injection. These changes to the LCP structure may in turn impact the results of X-ray diffraction measurements from membrane protein crystals. To investigate the influence of HVIs on the structure of the LCP we conducted a study of the phase changes in monoolein/water and monoolein/buffer mixtures during continuous flow injection, at both atmospheric pressure and under vacuum. The reservoir pressure in the HVI was tracked to determine if there is any correlation with the phase behaviour of the LCP. The results indicated that, even though the reservoir pressure underwent (at times) significant variation, this did not appear to correlate with observed phase changes in the sample stream or correspond to shifts in the LCP lattice parameter. During vacuum injection, there was a three-way coexistence of the gyroid cubic phase, diamond cubic phase and lamellar phase. During injection at atmospheric pressure, the coexistence of a cubic phase and lamellar phase in the monoolein/water mixtures was also observed. The degree to which the lamellar phase is formed was found to be strongly dependent on the co-flowing gas conditions used to stabilize the LCP stream. A combination of laboratory-based optical polarization microscopy and simulation studies was used to investigate these observations.
Additional file 1 of The multifunctional roles of vegetated strips around and within agricultural fields. A systematic map protocol
Creators: name: Haddaway, Neal
name: Brown, Colin
name: Eggers, Sönke
name: Josefsson, Jonas
name: Kronvang, Brian
name: Randall, Nicola
name: Uusi-Kämppä, Jaana
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Plant Biology
subject: Computational Biology

description: Additional file 1. Search strategy development.
Additional file 2 of The multifunctional roles of vegetated strips around and within agricultural fields. A systematic map protocol
Creators: name: Haddaway, Neal
name: Brown, Colin
name: Eggers, Sönke
name: Josefsson, Jonas
name: Kronvang, Brian
name: Randall, Nicola
name: Uusi-Kämppä, Jaana
Publisher: name: figshare
Year: 2020
Subjects: subject: Molecular Biology
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Plant Biology
subject: Computational Biology

description: Additional file 2. Coding tool.
Additional file 1 of Body fat percentage and CRP correlates with a composite score of vascular risk markers in healthy, young adults - The Lifestyle, Biomarkers, and Atherosclerosis (LBA) study
Creators: name: Pettersson-Pablo, Paul
name: Cao, Yang
name: Bäckström, Torbjörn
name: Nilsson, Torbjörn
name: Hurtig-Wennlöf, Anita
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 1. Sensitivity analysis recalculation of the main Tables 2 and 3 from the manuscript, by reassignment of a portion of the subjects based on their blood pressure and estrogen contraceptive use.
Additional file 1 of Are alternative livelihood projects effective at reducing local threats to specified elements of biodiversity and/or improving or maintaining the conservation status of those elements?
Creators: name: Roe, Dilys
name: Booker, Francesca
name: Day, Mike
name: Zhou, Wen
name: Allebone-Webb, Sophie
name: Hill, Nicholas
name: Kumpel, Noelle
name: Petrokofsky, Gillian
name: Redford, Kent
name: Russell, Diane
name: Shepherd, Gill
name: Wright, Juliet
name: Sunderland, Terry
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology

description: Additional file 1. A list of search terms.
Interventions to reduce falls in hospitals: a systematic review and meta-analysis.
Creators: name: Morris, Meg
name: Webster, Kate
name: Jones, Cathy
name: Hill, Anne-Marie
name: Haines, Terry
name: McPhail, Steven
name: Kiegaldie, Debra
name: Slade, Susan
name: Jazayeri, Dana
name: Heng, Hazel
name: Shorr, Ronald
name: Carey, Leeanne
name: Barker, Anna
name: Cameron, Ian
Publisher: name: La Trobe
Year: 2022
Subjects: classificationCode: 420699
subject: Public health not elsewhere classified

description: BACKGROUND: Falls remain a common and debilitating problem in hospitals worldwide. The aim of this study was to investigate the effects of falls prevention interventions on falls rates and the risk of falling in hospital. DESIGN: Systematic review and meta-analysis. PARTICIPANTS: Hospitalised adults. INTERVENTION: Prevention methods included staff and patient education, environmental modifications, assistive devices, policies and systems, rehabilitation, medication management and management of cognitive impairment. We evaluated single and multi-factorial approaches. OUTCOME MEASURES: Falls rate ratios (rate ratio: RaR) and falls risk, as defined by the odds of being a faller in the intervention compared to control group (odds ratio: OR). RESULTS: There were 43 studies that satisfied the systematic review criteria and 23 were included in meta-analyses. There was marked heterogeneity in intervention methods and study designs. The only intervention that yielded a significant result in the meta-analysis was education, with a reduction in falls rates (RaR = 0.70 [0.51-0.96], P = 0.03) and the odds of falling (OR = 0.62 [0.47-0.83], P = 0.001). The patient and staff education studies in the meta-analysis were of high quality on the GRADE tool. Individual trials in the systematic review showed evidence for clinician education, some multi-factorial interventions, select rehabilitation therapies, and systems, with low to moderate risk of bias. CONCLUSION: Patient and staff education can reduce hospital falls. Multi-factorial interventions had a tendency towards producing a positive impact. Chair alarms, bed alarms, wearable sensors and use of scored risk assessment tools were not associated with significant fall reductions.
Top-down and bottom-up estimates of anthropogenic methyl bromide emissions from eastern China
Creators: name: Choi, H
name: Park, MK
name: Fraser, PJ
name: Park, H
name: Geum, S
name: Mühle, J
name: Kim, J
name: Porter, Ian
name: Salameh, PK
name: Harth, CM
name: Dunse, BL
name: Krummel, PB
name: Weiss, RF
name: O'Doherty, S
name: Young, D
name: Park, S
Publisher: name: La Trobe
Year: 2022
Subjects: classificationCode: 370199
subject: Atmospheric sciences not elsewhere classified

description: Methyl bromide (CH3Br) is a potent ozone-depleting substance (ODS) that has both natural and anthropogenic sources. CH3Br has been used mainly for preplant soil fumigation, post-harvest grain and timber fumigation, and structural fumigation. Most non-quarantine and pre-shipment (non-QPS) uses were phased out by 2005 for non-Article 5 (developed) countries and by 2015 for Article 5 (developing) countries under the Montreal Protocol on Substances that Deplete the Ozone Layer; some uses have continued under critical-use exemptions (CUEs). Under the protocol, individual nations are required to report annual data on CH3Br production and consumption for quarantine-pre-shipment (QPS) uses, non-QPS uses, and CUEs to the United Nations Environment Programme (UNEP). In this study, we analyzed high-precision, in situ measurements of atmospheric mole fractions of CH3Br obtained at the Gosan station on Jeju Island, South Korea, from 2008 to 2019. The background mole fractions of CH3Br in the atmosphere at Gosan declined from 8.5±0.8gppt (parts per trillion) in 2008 to 7.4±0.6gppt in 2019 at a rate of -0.13±0.02gpptgyr-1. At Gosan, we also observed periods of persistent mole fractions (pollution events) elevated above the decreasing background in continental air masses from China. Statistical back-trajectory analyses showed that these pollution events are predominantly traced back to CH3Br emissions from eastern China. Using an interspecies correlation (ISC) method with the reference trace species CFC-11 (CCl3F), we estimate anthropogenic CH3Br emissions from eastern China at an average of 4.1±1.3gGggyr-1 in 2008-2019, approximately 2.9±1.3gGggyr-1 higher than the bottom-up emission estimates reported to UNEP. Possible non-fumigation CH3Br sources - rapeseed production and biomass burning - were assessed, and it was found that the discrepancy is most likely due to unreported or incorrectly reported QPS and non-QPS fumigation uses. These unreported anthropogenic emissions of CH3Br are confined to eastern China and account for 30g%-40g% of anthropogenic global CH3Br emissions. They are likely due to delays in the introduction of CH3Br alternatives, such as sulfuryl fluoride (SO2F2), heat, and irradiation, and a possible lack of industry awareness of the need for regulation of CH3Br production and use.
Additional file 4 of Are alternative livelihood projects effective at reducing local threats to specified elements of biodiversity and/or improving or maintaining the conservation status of those elements?
Creators: name: Roe, Dilys
name: Booker, Francesca
name: Day, Mike
name: Zhou, Wen
name: Allebone-Webb, Sophie
name: Hill, Nicholas
name: Kumpel, Noelle
name: Petrokofsky, Gillian
name: Redford, Kent
name: Russell, Diane
name: Shepherd, Gill
name: Wright, Juliet
name: Sunderland, Terry
Publisher: name: figshare
Year: 2020
Subjects: subject: Molecular Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Additional file 4. The search strings used for internet search engines.
Are There Betel Quid Mixtures Less Harmful Than Others? A Scoping Review of the Association between Different Betel Quid Ingredients and the Risk of Oral Submucous Fibrosis
Creators: name: Cirillo, N
name: Duong, PH
name: Er, WT
name: Do, CTN
name: De Silva, MEH
name: Dong, Y
name: Cheong, SC
name: Sari, Elizabeth
name: McCullough, MJ
name: Zhang, P
name: Prime, SS
Publisher: name: La Trobe
Year: 2022
Subjects: classificationCode: 310199
subject: Biochemistry and cell biology not elsewhere classified

description: Oral submucous fibrosis (OSF) is a potentially malignant condition of the oral cavity characterized by progressive fibrosis of the submucosal tissues. OSF is typically associated with the use of betel quid (BQ), a chewing package made of natural products (e.g., areca nut, betel leaves), with or without smokeless tobacco. BQ ingredients contain pro‐carcinogenic bioactive compounds, but also potentially protective biomolecules, and we have shown recently that the chemical properties of different BQ recipes vary, which may explain the unequal prevalence of OSF and oral cancer in BQ users in different geographical regions. Hence, this scoping review was aimed at evaluating the existing literature regarding different BQ compounds and their association with OSF. The repository of the National Library of Medicine (MEDLINE/PubMed), medRxiv databases, Google scholar, Baidu scholar, CNKI, and EBSCO were used to search for publications that investigated the association between BQ chewing and OSF up to November 2021. The search terminology was constructed using the keywords “betel quid” and “oral submucous fibrosis”, and their associated terms, with the use of Boolean operators. The search was conducted under Preferred Reporting Items for Systematic Reviews and Meta‐Analyses extension for Scoping Reviews (PRISMA‐ScR) guidelines, together with clear inclusion and exclusion criteria. The review showed that the risk of developing OSF varied between different BQ recipes, and that chewing BQ mixtures containing betel inflorescence (BI) significantly increased the risk of OSF, as did the addition of tobacco. Conversely, the use of betel leaf in the mixture was likely to be protective, which may be due to the presence of polyphenols. Although further research is needed to determine the effect of individual BQ ingredients in the development of OSF, our pilot results provide the scope and rationale for informing future chemopreventive strategies for OSF and oral cancer in BQ chewers.
Cytopathological Outcomes of Knocking Down Expression of Mitochondrial Complex II Subunits in Dictyostelium discoideum
Creators: name: Lay, Sui
name: Pearce, Xavier
name: Sanislav, Oana
name: Fisher, Paul
name: Annesley, Sarah
Publisher: name: La Trobe
Year: 2022
Subjects: classificationCode: 310199
subject: Biochemistry and cell biology not elsewhere classified

description: Mitochondrial Complex II is composed of four core subunits and mutations to any of the subunits result in lowered Complex II activity. Surprisingly, although mutations in any of the subunits can yield similar clinical outcomes, there are distinct differences in the patterns of clinical disease most commonly associated with mutations in different subunits. Thus, mutations to the SdhA subunit most often result in mitochondrial disease phenotypes, whilst mutations to the other subunits SdhB-D more commonly result in tumour formation. The reason the clinical outcomes are so different is unknown. Here, we individually antisense-inhibited three of the Complex II subunits, SdhA, SdhB or SdhC, in the simple model organism Dictyostelium discoideum. Whilst SdhB and SdhC knockdown resulted in growth defects on bacterial lawns, antisense inhibition of SdhA expression resulted in a different pattern of phenotypic defects, including impairments of growth in liquid medium, enhanced intracellular proliferation of the bacterial pathogen Legionella pneumophila and phagocytosis. Knockdown of the individual subunits also produced different abnormalities in mitochondrial function with only SdhA knockdown resulting in broad mitochondrial dysfunction. Furthermore, these defects were shown to be mediated by the chronic activation of the cellular energy sensor AMP-activated protein kinase. Our results are in agreement with a role for loss of function of SdhA but not the other Complex II subunits in impairing mitochondrial oxidative phosphor-ylation and they suggest a role for AMP-activated protein kinase in mediating the cytopathological outcomes.
Additional file 5 of Are alternative livelihood projects effective at reducing local threats to specified elements of biodiversity and/or improving or maintaining the conservation status of those elements?
Creators: name: Roe, Dilys
name: Booker, Francesca
name: Day, Mike
name: Zhou, Wen
name: Allebone-Webb, Sophie
name: Hill, Nicholas
name: Kumpel, Noelle
name: Petrokofsky, Gillian
name: Redford, Kent
name: Russell, Diane
name: Shepherd, Gill
name: Wright, Juliet
name: Sunderland, Terry
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Evolutionary Biology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Computational Biology

description: Additional file 5. Unsourced studies and studies excluded at full text.
Additional file 7 of Are alternative livelihood projects effective at reducing local threats to specified elements of biodiversity and/or improving or maintaining the conservation status of those elements?
Creators: name: Roe, Dilys
name: Booker, Francesca
name: Day, Mike
name: Zhou, Wen
name: Allebone-Webb, Sophie
name: Hill, Nicholas
name: Kumpel, Noelle
name: Petrokofsky, Gillian
name: Redford, Kent
name: Russell, Diane
name: Shepherd, Gill
name: Wright, Juliet
name: Sunderland, Terry
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Computational Biology

description: Additional file 7. List of 106 projects included within the systematic map.
Collaborative team approaches to supporting inclusion of children with disability in mainstream schools: A co-design study.
Creators: name: Garcia Melgar, Ana
name: Hyett, Nerida
name: Bagley, Kerryn
name: McKinstry, Carol
name: Spong, Jo
name: Iacono, Teresa
Publisher: name: La Trobe
Year: 2022
Subjects: classificationCode: 390499
subject: Specialist studies in education not elsewhere classified

description: BACKGROUND: Collaborative consultation involving educational staff, allied health professionals and parents working towards goals for children with disability is considered best practice in inclusive education. However, challenges can hinder effective collaboration, thereby potentially limiting child outcomes. AIMS: The study aims were to (a) explore the experiences of teachers, teacher assistants, allied health professionals, and parents engaging in collaborative teamwork to support inclusion of children with disability in mainstream primary schools, and (b) identify key factors influencing effective teamwork and the design of support strategies. METHODS AND PROCEDURES: A co-design research method emulated collaborative consultation and authentic stakeholder teamwork. Data were from a series of six co-design workshops (15 h); discussions were audio-recorded and transcribed verbatim. An interpretive descriptive method of thematic analysis resulted in four key themes. OUTCOMES AND RESULTS: Critical factors that influenced collaborative teamwork were access to diagnosis and funding, mechanisms for team communications, practical ways of working together, and shared understandings of inclusion. CONCLUSIONS AND IMPLICATIONS: Stakeholder teams require effective communication mechanisms and practical ways of working together within and outside of classrooms. Shared understandings of inclusion provide a foundation for collaboration, requiring access to professional development to ensure teamwork is informed by best inclusive education practice.
Additional file 8 of Are alternative livelihood projects effective at reducing local threats to specified elements of biodiversity and/or improving or maintaining the conservation status of those elements?
Creators: name: Roe, Dilys
name: Booker, Francesca
name: Day, Mike
name: Zhou, Wen
name: Allebone-Webb, Sophie
name: Hill, Nicholas
name: Kumpel, Noelle
name: Petrokofsky, Gillian
name: Redford, Kent
name: Russell, Diane
name: Shepherd, Gill
name: Wright, Juliet
name: Sunderland, Terry
Publisher: name: figshare
Year: 2020
Subjects: subject: Molecular Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 8. Critical appraisal scores.
Additional file 9 of Are alternative livelihood projects effective at reducing local threats to specified elements of biodiversity and/or improving or maintaining the conservation status of those elements?
Creators: name: Roe, Dilys
name: Booker, Francesca
name: Day, Mike
name: Zhou, Wen
name: Allebone-Webb, Sophie
name: Hill, Nicholas
name: Kumpel, Noelle
name: Petrokofsky, Gillian
name: Redford, Kent
name: Russell, Diane
name: Shepherd, Gill
name: Wright, Juliet
name: Sunderland, Terry
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: Computational Biology

description: Additional file 9. Systematic review studies following critical appraisal.
Polythiophene - Molecule of the Month November 1998 [Archived version]
Creators: name: Tebbutt, Peter
Publisher: name: figshare
Year: 2017
Subjects: subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences

description: This is the Molecule of the Month entry for November 1998 about polythiophene. It is a pdf archive version of the HTML webpage.
Models of cardiovascular surgery biobanking to facilitate translational research and precision medicine
Creators: name: Zhu, YY
name: Jackson, D
name: Hunter, B
name: Beattie, L
name: Turner, L
name: Hambly, BD
name: Jeremy, RW
name: Malecki, C
name: Robertson, EN
name: Li, Amy
name: dos Remedios, C
name: Richmond, D
name: Semsarian, C
name: O'Sullivan, JF
name: Bannon, PG
name: Lal, S
Publisher: name: La Trobe
Year: 2022
Subjects: classificationCode: 320199
subject: Cardiovascular medicine and haematology not elsewhere classified

description: Biobanking in health care has evolved over the last few decades from simple biological sample repositories to complex and dynamic units with multi-organizational infrastructure networks and has become an essential tool for modern medical research. Cardiovascular tissue biobanking provides a unique opportunity to utilize cardiac and vascular samples for translational research into heart failure and other related pathologies. Current techniques for diagnosis, classification, and treatment monitoring of cardiac disease relies primarily on interpretation of clinical signs, imaging, and blood biomarkers. Further research at the disease source (i.e. myocardium and blood vessels) has been limited by a relative lack of access to quality human cardiac tissue and the inherent shortcomings of most animal models of heart disease. In this review, we describe a model for cardiovascular tissue biobanking and databasing, and its potential to facilitate basic and translational research. We share techniques to procure endocardial samples from patients with hypertrophic cardiomyopathy, heart failure with reduced ejection fraction, and heart failure with preserved ejection fraction, in addition to aortic disease samples. We discuss some of the issues with respect to data collection, privacy, biobank consent, and the governance of tissue biobanking. The development of tissue biobanks as described here has significant scope to improve and facilitate translational research in multi-omic fields such as genomics, transcriptomics, proteomics, and metabolomics. This research heralds an era of precision medicine, in which patients with cardiovascular pathology can be provided with optimized and personalized medical care for the treatment of their individual phenotype.
title: ADCO, Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome I, Cart. 185 (11 H 70), f. 0006v
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome I, Archives départementales de la Côte-d'Or, Cart. 185 (11 H 70), f. 0006v, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome I, Archives départementales de la Côte-d'Or, Cart. 185 (11 H 70), f. 0006v, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Additional file 1 of Perspectives of general practitioners and nursing staff on acute hospital transfers of nursing home residents in Germany: results of two cross-sectional studies
Creators: name: Fassmer, Alexander
name: Pulst, Alexandra
name: Spreckelsen, Ove
name: Hoffmann, Falk
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Science Policy

description: Additional file 1: Original version of the questionnaire on general practitioners.
Imaging of femtosecond bond breaking and charge dynamics in ultracharged peptides
Creators: name: Dawod, I Eliah
name: Tîmneanu, N
name: Mancuso, Adrian
name: Caleman, C
name: Grånäs, O
Publisher: name: La Trobe
Year: 2022
Subjects: classificationCode: 340699
subject: Physical chemistry not elsewhere classified
classificationCode: 340799
subject: Theoretical and computational chemistry not elsewhere classified
classificationCode: 519999
subject: Other physical sciences not elsewhere classified

description: X-ray free-electrons lasers have revolutionized the method of imaging biological macromolecules such as proteins, viruses and cells by opening the door to structural determination of both single particles and crystals at room temperature. By utilizing high intensity X-ray pulses on femtosecond timescales, the effects of radiation damage can be reduced. Achieving high resolution structures will likely require knowledge of how radiation damage affects the structure on an atomic scale, since the experimentally obtained electron densities will be reconstructed in the presence of radiation damage. Detailed understanding of the expected damage scenarios provides further information, in addition to guiding possible corrections that may need to be made to obtain a damage free reconstruction. In this work, we have quantified the effects of ionizing photon-matter interactions using first principles molecular dynamics. We utilize density functional theory to calculate bond breaking and charge dynamics in three ultracharged molecules and two different structural conformations that are important to the structural integrity of biological macromolecules, comparing to our previous studies on amino acids. The effects of the ultracharged states and subsequent bond breaking in real space are studied in reciprocal space using coherent diffractive imaging of an ensemble of aligned biomolecules in the gas phase. This journal is
title: ADCO, Cart. 186 (11 H 71), f. 0028v
Creators: name: de la Côte-d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, t. II (XVe siècle), tome II, Archives départementales de la Côte-d'Or, C
art. 186 (11 H 71). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, t. II (XVe siècle), tome II, Archives départementales de la
 Côte-d'Or, Cart. 186 (11 H 71), f. 0028v, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-
project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Additional file 1 of Machine learning-aided analyses of thousands of draft genomes reveal specific features of activated sludge processes
Creators: name: Ye, Lin
name: Mei, Ran
name: Wen-Tso Liu
name: Hongqiang Ren
name: Xu-Xiang Zhang
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 1: Table S1. Information about the WWTPs and activate sludge samples analyzed in this study. Table S2. Accession numbers of the metagenomic datasets used in this study. Table S3. Abundance of AS MAGs assigned to each phylum. Table S4. Prediction report of the random forest model. Table S5. Importance values and descriptions of the top 20 COGs identified by random forest model to differentiate the AS and non-AS MAGs. Figure S1. Geographical locations of the WWTPs where activated sludge samples were collected by us and other researchers. Figure S2. Associations between MAG completeness and number of contigs (a), and associations between MAG completeness and number of contigs (b). Figure S3. Venn diagram showing the shared and unique MAGs of WWTP1, WWTP2, WWTP3 and WWTP4. Figure S4. Profile of protein sequences identity between different WWTPs. The protein sequences predicted from all assembly contigs of each WWTP were compared each other with Diamond and then the best hits of the protein sequences were counted and summarized. Figure S5. Random forest parameter tuning and optimization. (a) Number of trees (n_estimators); (b) Tree depth; (c) Maximum features. Figure S6. Phylogeny of the erroneously predicted MAGs. The topology of this tree is exactly same with Fig. 1b. Extended lines were added to show positions of the erroneously predicted MAGs.
Additional file 1 of Treating impulsivity with probiotics in adults (PROBIA): study protocol of a multicenter, double-blind, randomized, placebo-controlled trial
Creators: name: Gara Arteaga-Henríquez
name: Rosales-Ortiz, Silvia
name: Arias-Vásquez, Alejandro
name: Istvan Bitter
name: Ginsberg, Ylva
name: Ibañez-Jimenez, Pol
name: Kilencz, Tünde
name: Lavebratt, Catharina
name: Matura, Silke
name: Reif, Andreas
name: Janos Rethelyi
name: Richarte, Vanesa
name: Rommelse, Nanda
name: Siegl, Anne
name: J. Ramos-Quiroga
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Additional file 1. Standard Protocol Items: Recommendations for Interventional Trials (SPIRIT) 2013 checklist: recommended items to address in a clinical trial protocol and related documents.
Unsupervised learning approaches to characterizing heterogeneous samples using X-ray single-particle imaging
Creators: name: Zhuang, Y
name: Awel, S
name: Barty, A
name: Bean, R
name: Bielecki, J
name: Bergemann, M
name: Daurer, BJ
name: Ekeberg, T
name: Estillore, AD
name: Fangohr, H
name: Giewekemeyer, K
name: Hunter, MS
name: Karnevskiy, M
name: Kirian, RA
name: Kirkwood, H
name: Kim, Y
name: Koliyadu, J
name: Lange, H
name: Letrun, R
name: Lübke, J
name: Mall, A
name: Michelat, T
name: Morgan, AJ
name: Roth, N
name: Samanta, AK
name: Sato, T
name: Shen, Z
name: Sikorski, M
name: Schulz, F
name: Spence, JCH
name: Vagovic, P
name: Wollweber, T
name: Worbs, L
name: Xavier, PL
name: Yefanov, O
name: Maia, FRNC
name: Horke, DA
name: Küpper, J
name: Loh, ND
name: Mancuso, Adrian
name: Chapmanc, HN
name: Ayyera, K
Publisher: name: La Trobe
Year: 2022
Subjects: classificationCode: 510299
subject: Atomic, molecular and optical physics not elsewhere classified
classificationCode: 510201
subject: Atomic and molecular physics
classificationCode: 510499
subject: Condensed matter physics not elsewhere classified
classificationCode: 340699
subject: Physical chemistry not elsewhere classified

description: One of the outstanding analytical problems in X-ray single-particle imaging (SPI) is the classification of structural heterogeneity, which is especially difficult given the low signal-to-noise ratios of individual patterns and the fact that even identical objects can yield patterns that vary greatly when orientation is taken into consideration. Proposed here are two methods which explicitly account for this orientation-induced variation and can robustly determine the structural landscape of a sample ensemble. The first, termed common-line principal component analysis (PCA), provides a rough classification which is essentially parameter free and can be run automatically on any SPI dataset. The second method, utilizing variation auto-encoders (VAEs), can generate 3D structures of the objects at any point in the structural landscape. Both these methods are implemented in combination with the noise-tolerant expand-maximize-compress (EMC) algorithm and its utility is demonstrated by applying it to an experimental dataset from gold nanoparticles with only a few thousand photons per pattern. Both discrete structural classes and continuous deformations are recovered. These developments diverge from previous approaches of extracting reproducible subsets of patterns from a dataset and open up the possibility of moving beyond the study of homogeneous sample sets to addressing open questions on topics such as nanocrystal growth and dynamics, as well as phase transitions which have not been externally triggered.
Additional file 1 of It's the fiber, not the fat: significant effects of dietary challenge on the gut microbiome
Creators: name: Morrison, Kathleen
name: Jašarević, Eldin
name: Howard, Christopher
name: Bale, Tracy
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Physiology
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry

description: Additional file 1: Figure S1. Sex-specific alterations of refined diet on gut microbiota composition. (A) Venn diagram depicting microbiota significantly altered by diet in young adult and aged males and females (27), female-specific taxa altered by diet (7) and male-specific taxa altered by diet (5) identified by linear discriminant analysis (FDR
Additional file 1 of Bioinformatics analyses on the immune status of renal transplant patients, a systemic research of renal transplantation
Creators: name: Meng, Mei
name: Weitao Zhang
name: Qunye Tang
name: Baixue Yu
name: Tingting Li
name: Ruiming Rong
name: Tongyu Zhu
name: Xu, Ming
name: Shi, Yi
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Immunology
subject: FOS: Clinical medicine
subject: Marine Biology
subject: Hematology

description: Additional file 1: Table S1. GSE datasets of renal transplant patients. Table S2. The overlapping DEGs in the comparison of stable and chronic rejection groups. Table S3. The overlapping DEGs in the comparison of acute rejection and stable groups. Table S4. The overlapping DEGs in the comparison of acute rejection and chronic rejection groups
Analytical Model for the Radial Strength and Collapse of the Bicycle Wheel
Creators: name: Ford, Matthew
name: Oluwaseyi Balogun
Publisher: name: figshare
Year: 2017
Subjects: subject: Mechanical Engineering
subject: FOS: Mechanical engineering

description: Slides from podium presentation at the International Cycling Safety Conference, Davis, CA 2017.
title: ADCO, Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome IV, Cart. 188 (11 H 73), f. 0202v
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome IV, Archives départementales de la Côte-d'Or, Cart. 188 (11 H 73), f. 0202v, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome IV, Archives départementales de la Côte-d'Or, Cart. 188 (11 H 73), f. 0202v, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v