cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 2: Figure S1. of Impaired survival of regulatory T cells in pulmonary sarcoidosis
Creators: name: Broos, Caroline
name: Nimwegen, Menno Van
name: Kleinjan, Alex
name: Berge, Bregje Ten
name: Muskens, Femke
name: Veen, Johannes In
name: Annema, Jouke
name: Lambrecht, Bart
name: Hoogsteden, Henk
name: Hendriks, Rudi
name: Kool, Mirjam
name: Blink, Bernt Van Den
Publisher: name: Figshare
Year: 2015
Subjects: subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Hematology

description: Treg proportions were determined in BALF of HCs and SRC patients. A. Representative flow cytometric analysis of an HC and SRC patient to determine Treg proportions in BALF. B. BALF Treg proportions. Statistics: Horizontal lines indicate the median and significance was determined using a Mannâ  Whitney U test. Abbreviations: BALF: broncho-alveolar lavage fluid, HC: healthy control, SRC: sarcoidosis. (PDF 386Â kb)
Additional file 1: of A mixed methods study to examine the influence of the neighborhood social context on adolescent health service utilization
Creators: name: Mmari, Kristin
name: Marshall, Beth
name: Hsu, Trevor
name: Shon, Ji
name: Amenze Eguavoen
Publisher: name: Figshare
Year: 2016
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Supplementary Selected Characteristics of Study Communities. (DOC 31 kb)
Additional file 4: Figure S3. of Impaired survival of regulatory T cells in pulmonary sarcoidosis
Creators: name: Broos, Caroline
name: Nimwegen, Menno Van
name: Kleinjan, Alex
name: Berge, Bregje Ten
name: Muskens, Femke
name: Johannes In ’T Veen
name: Annema, Jouke
name: Lambrecht, Bart
name: Hoogsteden, Henk
name: Hendriks, Rudi
name: Kool, Mirjam
name: Blink, Bernt Van Den
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Isolated Th cells and Tregs were cultured with recombinant human IL-2. A. Percentage alive Th cells and Tregs at 72 hours of culture is shown. Horizontal line indicates the median. Significance was determined using a Mann–Whitney U test, *p
Pinus funebris Kom. Acta Horti Petropol.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Pinopsida
Pinales
Pinaceae
Pinus
Pinus funebris

description: 1. Pinus funebris Kom. Acta Horti Petropol. 20: 177, 1901.
Lectotype (Orlova, 2001: 26): Korea septentrionalis, prov. Cham-gion, distr. Musang, flumen Tumin-gan, Pensekori in valle Cham-muri, V 1897, V. L. Komarov.
Syntypes: Korea septentrionalis, distr. Cherieng, trajectus Kan-pa-rieng, fluvium Tumin-gan, 14 V 1897, N 76, V. L. Komarov; Prov. Cherieng, in jugo valle Pchalcha-gion (declive dextrum), in via ex oppido Cherieng ad trajectum Musang-llian, circa 800 m s. m., 19 V 1897, V. L. Komarov; Prov. Cham-gion, flumen Tumin Gan, trajectus Musang-llian, 22 V 1897, V. L. Komarov; Prov. Cham-gion, prope pag. Pensekori, 27 V 1897, N 76, V. L. Komarov; Flumen Tumin-gan, trajectus Kan-pa-rieng, 28 V 1897, V. L. Komarov; Fl. Tumin-gan, in valle Emmen-su, pagum Koczan-pen, 30 V 1897, V. L. Komarov; Vallis fl. Che-czchen-gan, fl. Jalu infl. in via ad oppid. Samsu, 2 VII 1897, V. L. Komarov.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 192, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Colletes edentulus NOSKIEWICZ 1936
Creators: name: Kuhlmann, M.
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Colletidae
Colletes
Colletes edentulus

description: Colletes edentulus NOSKIEWICZ 1936
Colletes edentulus NOSKIEWICZ 1936 - NOSKIEWICZ 1936: 329-330.
Description of female: The female of C. edentulus differs from C. tuberculatus only in the sculpture of the clypeus, the punctation of the terga, and the width of posterior tergal hair bands. In C. edentulus, the punctation of the clypeus is finer and the punctures are more rounded apically (Fig. 2) than in C. tuberculatus (Fig. 1). The posterior hair band of T1 is slightly broader in C. edentulus (Fig. 5) than in C. tuberculatus (Fig. 4), and the surface of T1 is flatter and slightly irregular as the light reflections show (Fig. 5), whereas in C. tuberculatus T1 is regularly convex (Fig. 4). Punctation on the disc of T1 is similar in both species, but in C. tuberculatus it becomes progressively smaller and denser towards the apex but is still distinct (Fig. 4), whereas in C. edentulus the apical punctation is indistinct, more dispersed, and slightly larger (Fig. 5).
description: Published as part of Kuhlmann, M., 2010, Taxonomic notes on some Palaearctic Colletes bees (Insecta: Hymenoptera: Colletidae), pp. 749-755 in Linzer biologische Beiträge 42 (1) on page 750, DOI: 10.5281/zenodo.5333002
Additional file 3: Figure S2. of Impaired survival of regulatory T cells in pulmonary sarcoidosis
Creators: name: Broos, Caroline
name: Nimwegen, Menno Van
name: Kleinjan, Alex
name: Berge, Bregje Ten
name: Muskens, Femke
name: Johannes In ’T Veen
name: Annema, Jouke
name: Lambrecht, Bart
name: Hoogsteden, Henk
name: Hendriks, Rudi
name: Kool, Mirjam
name: Blink, Bernt Van Den
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: Freshly isolated Th cells were CFSE-labelled, TCR-stimulated and cultured without or with autologous Tregs. A. Flow cytometry analysis of one HC and SRC patient after 4 days of culture. B. Percentage suppression by Tregs on autologous Th cell proliferation. Percentage suppression was calculated as follows: ((%divided Th cells only - % divided Th cells co-cultured with Tregs)/(%divided Th cells only))*100 %. Horizontal lines indicate the median and significance was determined using a Mann–Whitney U test, *p
Acer triflorum Kom.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Sapindales
Sapindaceae
Acer
Acer triflorum

description: 2. Acer triflorum Kom.
Acta Horti Petropol. 18: 430, 1901.
Syntypes (2): Korea septentrionalis, trajectum Czachin ien, in ripa Jalu infra Mao ell schan, 1 IX 1897, V. L. Komarov.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 192, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Additional file 1: Table S1. of Impaired survival of regulatory T cells in pulmonary sarcoidosis
Creators: name: Broos, Caroline
name: Nimwegen, Menno Van
name: Kleinjan, Alex
name: Berge, Bregje Ten
name: Muskens, Femke
name: Johannes In ’T Veen
name: Annema, Jouke
name: Lambrecht, Bart
name: Hoogsteden, Henk
name: Hendriks, Rudi
name: Kool, Mirjam
name: Blink, Bernt Van Den
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Study subject characteristic. *Median (minimum-maximum). † Anonymous blood donors. ‡ Two of these patients had Stage I and two had Stage II sarcoidosis, determined by CT scan. § Disease course of a subgroup of patients (n = 28) was determined 2 years after study inclusion. Resolution of disease was defined by the absence of abnormalities on the chest X-ray and clinical symptoms (n = 5). Patients with residual abnormalities on chest X-ray, but without need for treatment were designated as non-active chronic (n = 15); and patients with need for treatment (n = 8) as active chronic (Prasse et al., AJRCCM (2010) 182(4):540–8). (DOCX 21 kb)
Angelica crucifolia Kom.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Apiales
Apiaceae
Angelica
Angelica crucifolia

description: 3. Angelica crucifolia Kom.
Acta Horti Petropol. 25: 170, 1905.
Holotype: Korea septentrionalis, ad ripas fl. Cza-schin-gan, fl. Jalu influentis, 27 VIII 1897, V. L. Komarov.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 192, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Additional file 1: of What is the role of community capabilities for maternal health? An exploration of community capabilities as determinants to institutional deliveries in Bangladesh, India, and Uganda
Creators: name: Paina, Ligia
name: Vadrevu, Lalitha
name: S. Hanifi
name: Akuze, Joseph
name: Rieder, Rachel
name: Chan, Kitty
name: Peters, David
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: Computational Biology

description: Future Health Systems Research Consortium Unlocking Community Capabilities - Household Survey Measures. 2011, Johns Hopkins University School of Public Health - Future Health Systems Consortium: Baltimore, MD. (DOCX 20 kb)
Colletes ravulus NOSKIEWICZ 1936
Creators: name: Kuhlmann, M.
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Colletidae
Colletes
Colletes ravulus

description: Colletes ravulus NOSKIEWICZ 1936
Colletes ravulus NOSKIEWICZ 1936 - NOSKIEWICZ 1936: 335-337.
The specimens assigned to C. edentulus in KUHLMANN (2009) all belong to C. ravulus as understood here.
Description of female: Colletes ravulus and C. tuberculatus differ only in the sculpture of the clypeus and in the punctation of the terga. In C. ravulus, the distance between the punctures of the clypeus is slightly broader (Fig. 3) than in C. tuberculatus (Fig. 1), but the sculpture is otherwise identical. In C. ravulus, the punctation on the disc of T1 is much denser and the punctures are slightly smaller (Fig. 6) than in C. tuberculatus (Fig. 4). In both species the punctation becomes much smaller and denser apically, but more so in C. ravulus (Fig. 6).
description: Published as part of Kuhlmann, M., 2010, Taxonomic notes on some Palaearctic Colletes bees (Insecta: Hymenoptera: Colletidae), pp. 749-755 in Linzer biologische Beiträge 42 (1) on page 751, DOI: 10.5281/zenodo.5333002
Additional file 2: Figure S1. of Early evolutionary history and genomic features of gene duplicates in the human genome
Creators: name: Lijing Bu
name: Katju, Vaishali
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology
subject: 110309 Infectious Diseases
subject: 60506 Virology

description: Decrease in the frequency of intrachromosomal duplicates with K S in three age-cohorts. Figure S2. The physical distance between intrachromosomal paralogs as a function of K S . Figure S3. Duplication span of DNA- and RNA-mediated duplicates as a function of K S . Figure S4. Transcriptional orientation (direct versus inverse) of intrachromosomal duplicates within three age-cohorts. Figure S5. Frequencies of three structural categories of DNA-mediated gene duplicates across three age-cohorts. Figure S6. Box plot displaying the distribution of minimum duplication span for young gene duplicates. (PDF 303 kb)
Angelica flaccida Kom. Acta Horti Petropol.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Apiales
Apiaceae
Angelica
Angelica flaccida

description: 4. Angelica flaccida Kom. Acta Horti Petropol. 18: 431, 1901.
Lectotype (Vinogradova in Grubov, 2004: 25): Korea septentrionalis, in valle rivi ad trajectum Peksan-ien, via ab oppid. Samsu ad inferior spatia flumen Czan-dschin-gan, 5 VIII 1897, V. L. Komarov.
Syntype: Korea septentrionalis, ad trajectum Peksan-ien, meridiem in oppid. Samsu, 5 VIII 1897, V. L. Komarov.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 192, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Additional file 1: Table S1. of Early evolutionary history and genomic features of gene duplicates in the human genome
Creators: name: Lijing Bu
name: Katju, Vaishali
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Marine Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology
subject: 110309 Infectious Diseases
subject: 60506 Virology

description: Evolutionary and genomic features of 184 gene duplicates with low synonymous divergence in the human genome. (PDF 262 kb)
Colletes indicus KUHLMANN 2003
Creators: name: Kuhlmann, M.
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Colletidae
Colletes
Colletes indicus

description: Colletes indicus KUHLMANN 2003
Colletes indicus KUHLMANN 2003 - KUHLMANN 2003 b: 895.
This species was described based on a single male collected in the Nilgiri Hills near Coonoor (KUHLMANN 2003). Recently I received a male and female of C. indicus that had been collected together by M. HALADA on 26.iv.2005 near the type locality in Pakyra, Nilgiri Hills (N11°29.9´E76°36.9´), 2250 m (research collection KUHLMANN). This permits the description of the hitherto unknown female.
Description of female: The females of the marginatus -group are very similar and C. indicus closely resembles the other species in general habitus (Fig. 7). But like the male (Kuhlmann 2003), it is morpholgically isolated within the species-group and shows some character states that distinguish C. indicus from all of its relatives: the edge of the preoccipital area behind the eyes is weakly developed and not as sharply angled as in the other species; the punctation of the clypeus is much coarser, with the punctures less clearly delimited and about twice the size of those of its relatives, giving the clypeus a more shiny appearance (Fig. 8); the punctation on the disc of T1 is more dispersed and the punctures are more than twice as wide as in the other species (Fig. 9).
description: Published as part of Kuhlmann, M., 2010, Taxonomic notes on some Palaearctic Colletes bees (Insecta: Hymenoptera: Colletidae), pp. 749-755 in Linzer biologische Beiträge 42 (1) on page 751, DOI: 10.5281/zenodo.5333002
Angelica kiusiana Maxim.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Apiales
Apiaceae
Angelica
Angelica kiusiana

description: 5. Angelica kiusiana Maxim.
Bull. Acad. Sci. Pétersb. 19: 277, 1874.
Syntype: Korean archipelago, 1863, R. Oldham.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 192, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Additional file 1: of Echinocandin B biosynthesis: a biosynthetic cluster from Aspergillus nidulans NRRL 8112 and reassembly of the subclusters Ecd and Hty from Aspergillus pachycristatus NRRL 11440 reveals a single coherent gene cluster
Creators: name: Hüttel, Wolfgang
name: Youssar, Loubna
name: Grüning, Björn
name: Günther, Stefan
name: Hugentobler, Katharina
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: PCR experiments and sequence alignments. This file containes further information on the PCR-reactions, a sequence alignment of the gene clusters Ecd, Hty and AE with the PCR product from genomic A. pachycristatus DNA, sequences of amplified ITS and calmodulin regions, their alignment with published sequences and a comparison of PCR-product sequences from the clusters of E. pachychristatus and E. delacroxii. (DOCX 8989 kb)
Cryptachaea Archer 1946
Creators: name: Smith, Helen M.
name: Vink, Cor J.
name: Fitzgerald, Brian M.
name: Sirvid, Phil J.
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Theridiidae
Cryptachaea

description: Genus Cryptachaea Archer, 1946
Cryptachaea — Archer 1946: 36, established as a subgenus of Theridion Walckenaer, 1805. Type species: Theridion catapetraeum Gertsch & Archer, 1942 [= C. porteri (Banks, 1896)], by original designation. Elevated to genus by Archer 1950: 14. Considered a junior synonym of Achaearanea Strand, 1929 by Levi 1955: 6. Removed from synonymy of Achaearanea by Yoshida 2008: 38.
Diagnosis. Cryptachaea keys out under Achaearanea according to Levi & Levi (1962). Yoshida (2008: 38) distinguished Cryptachaea from the other genera with a hooded ‘paracymbium’ (cymbial hood of Agnarsson 2004) that key out under Achaearanea, Henziectypus Archer, 1946 and Parasteatoda Archer, 1946, as follows: “... from Henziectypus by median apophysis attached to embolus with which it forms one sclerite, from Parasteatoda by cymbium extend [sic] beyond alveolus, tegulum spherical, and subtegulum shallow and ring-like”.
Comments. Yoshida (2008) first transferred C. veruculata into the genus Cryptachaea, diagnosed partly by fusion of the median apophysis and embolus. In a superficial examination, these sclerites can be seen separately in both C. veruculata and C. gigantipes (Figs 14, 16). Further examination of these species shows that both sclerites are indeed fused onto a common base, but possibly retain some flexibility by the membranous sections (Fig. 15). The sclerotised part of the base of the median apophysis bears a prominent medial knob, which cradles the base of the embolus. Furthermore, there is a fleshy lobe with a sclerotised tip extending ventrally from the fused part of the median apophysis/embolus (shown as the latter in C. veruculata by Merrett & Rowe 1961: fig. 5). The lobe locates firmly in a proventral pocket in the conductor base. This pocket is visible externally as a dark outline in both species (e.g. Fig. 12). These features distinguish the two Australasian species from the cosmopolitan Cryptachaea blattea, in which the embolus and median apophysis are fused but neither the knob nor lobe/pocket is present (C. blattea specimen examined: AM KS116774, Stokes Valley, Wellington, NZ, coll. B.M. Fitzgerald, Oct. 2011).
We also note that the males of the three Cryptachaea species discussed here possess cephalothoracic stridulatory ridges and corresponding abdominal pegs. These characters are present in a number of theridiid genera (Agnarsson 2004) but were not reported by Yoshida (2008) when he revalidated Cryptachaea.
description: Published as part of Smith, Helen M., Vink, Cor J., Fitzgerald, Brian M. & Sirvid, Phil J., 2012, Redescription and generic placement of the spider Cryptachaea gigantipes (Keyserling, 1890) (Araneae: Theridiidae) and notes on related synanthropic species in Australasia, pp. 38-56 in Zootaxa 3507 on page 44, DOI: 10.5281/zenodo.210934
Additional file 1: Table S1. of Depressive disorder and grief following spontaneous abortion
Creators: name: Susil Kulathilaka
name: Raveen Hanwella
name: Varuni De Silva
Publisher: name: Figshare
Year: 2016
Subjects: subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology

description: Type of support preferred by the females after spontaneous abortion. (DOCX 15 kb)
Hydrocotyle wilfordii Maxim.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Apiales
Apiaceae
Hydrocotyle
Hydrocotyle wilfordii

description: 6. Hydrocotyle wilfordii Maxim.
Bull. Acad. Sci. Pétersb. 31: 45, 1886.
Lectotype (Grubov, 2004: 29): Corea, Port Chusan, 1859, C. Wilford.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 192, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Additional file 2: Table S2. of Role of PTPN22 and CSK gene polymorphisms as predictors of susceptibility and clinical heterogeneity in patients with Henoch-Schönlein purpura (IgA vasculitis)
Creators: name: López-Mejías, Raquel
name: Genre, Fernanda
name: Remuzgo-Martínez, Sara
name: Pérez, Belén
name: Castañeda, Santos
name: Llorca, Javier
name: Ortego-Centeno, Norberto
name: Ubilla, Begoña
name: Mijares, Verónica
name: Trinitario Pina
name: Calvo-Río, Vanesa
name: Palmou, Natalia
name: Miranda-Filloy, José
name: Parejo, Antonio
name: Argila, Diego
name: Sánchez-Pérez, Javier
name: Rubio, Esteban
name: Luque, Manuel
name: Blanco-Madrigal, Juan
name: Galíndez-Aguirregoikoa, Eva
name: J. Ocejo-Vinyals
name: Martín, Javier
name: Blanco, Ricardo
name: González-Gay, Miguel
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics

description: CSK and PTPN22 haplotype analysis. (DOC 33 kb)
Peucedanum elegans Kom. Acta Horti Petropol.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Apiales
Apiaceae
Peucedanum
Peucedanum elegans

description: 7. Peucedanum elegans Kom. Acta Horti Petropol. 18: 430, 1901.
Lectotype (Vinogradova in Grubov, 2004: 30): Korea septentrionalis, flum. Jalu, 24 VII 1897, V. L. Komarov.
Syntype: Korea septentrionalis, pagum Karami, in rupibus in sylvis, 21-24 VII 1897, V. L. Komarov.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 192, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Additional file 1: Table S1. of Role of PTPN22 and CSK gene polymorphisms as predictors of susceptibility and clinical heterogeneity in patients with Henoch-Schönlein purpura (IgA vasculitis)
Creators: name: López-Mejías, Raquel
name: Genre, Fernanda
name: Remuzgo-Martínez, Sara
name: Pérez, Belén
name: Castañeda, Santos
name: Llorca, Javier
name: Ortego-Centeno, Norberto
name: Ubilla, Begoña
name: Mijares, Verónica
name: Trinitario Pina
name: Calvo-Río, Vanesa
name: Palmou, Natalia
name: Miranda-Filloy, José
name: Parejo, Antonio
name: Argila, Diego
name: Sánchez-Pérez, Javier
name: Rubio, Esteban
name: Luque, Manuel
name: Blanco-Madrigal, Juan
name: Galíndez-Aguirregoikoa, Eva
name: J. Ocejo-Vinyals
name: Martín, Javier
name: Blanco, Ricardo
name: González-Gay, Miguel
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Plant Biology

description: Different genetic models of inheritance for CSK polymorphisms. (DOC 28 kb)
Additional file 3: Table S3. of Role of PTPN22 and CSK gene polymorphisms as predictors of susceptibility and clinical heterogeneity in patients with Henoch-Schönlein purpura (IgA vasculitis)
Creators: name: López-Mejías, Raquel
name: Genre, Fernanda
name: Remuzgo-Martínez, Sara
name: Pérez, Belén
name: Castañeda, Santos
name: Llorca, Javier
name: Ortego-Centeno, Norberto
name: Ubilla, Begoña
name: Mijares, Verónica
name: Trinitario Pina
name: Calvo-Río, Vanesa
name: Palmou, Natalia
name: Miranda-Filloy, José
name: Parejo, Antonio
name: Argila, Diego
name: Sánchez-Pérez, Javier
name: Rubio, Esteban
name: Luque, Manuel
name: Blanco-Madrigal, Juan
name: Galíndez-Aguirregoikoa, Eva
name: J. Ocejo-Vinyals
name: Martín, Javier
name: Blanco, Ricardo
name: González-Gay, Miguel
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Genotype and allele frequencies of CSK and PTPN22 gene polymorphisms in HSP patients according to sex and the presence of joint manifestations (arthralgia or arthritis). (DOC 67 kb)
Pimpinella calycina var. brachycarpa Kom.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Apiales
Apiaceae
Pimpinella
Pimpinella calycina
Pimpinella calycina maxim. var. brachycarpa kom.

description: *8. Pimpinella calycina Maxim. var. brachycarpa Kom.
Acta Horti Petropol. 25: 145, 1907.
Syntype: In silvis ad trajectum Peksan-ien, via ab oppido Sam-su ad fl. Czan-dschin-gan, 5 VIII 1897, V. L. Komarov.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 192, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Additional file 1: of Cortical activation patterns in healthy subjects during the traditional Japanese word generation task Shiritori determined by multichannel near-infrared spectroscopy
Creators: name: Nakahachi, Takayuki
name: Ishii, Ryouhei
name: Leonides Canuet
name: Takahashi, Hidetoshi
name: Ishitobi, Makoto
name: Kamio, Yoko
name: Iwase, Masao
Publisher: name: Figshare
Year: 2016
Subjects: subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Grand average waveforms of changes in [oxy-Hb] (red), [deoxy-Hb] (blue) and [total-Hb] (green) during the Shiritori task. For each channel, the x-axis denotes time from 0 to 160 s and the y-axis denotes activation between −0.8 and 0.8 mM∙mm. The Shiritori task period is marked by two vertical dashed lines at 10 and 100 s. CH, channel. (PDF 830 kb)
Additional file 7: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591
Creators: name: Johnson, Katherine
name: Reynard, Louise
name: Loughlin, John
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biophysics
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer

description: Bioinformatics database search of the SNPs in high LD with rs9350591.
Sanicula tuberculata Maxim.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Apiales
Apiaceae
Sanicula
Sanicula tuberculata

description: 9. Sanicula tuberculata Maxim.
Bull. Acad. Sci. Pétersb. 11: 431, 1867.
Lectotype (Vinogradova in Grubov, 2004: 31 as : Corea, Port Chusan, 1859, C. Wilford.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 192, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Additional file 11: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591
Creators: name: Johnson, Katherine
name: Reynard, Louise
name: Loughlin, John
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified

description: Allelic expression imbalance analysis stratified by disease state and joint site. (PDF 57 kb)
Aristolochia manshuriensis Kom. Acta Horti Petropol.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Piperales
Aristolochiaceae
Aristolochia
Aristolochia manshuriensis

description: *10. Aristolochia manshuriensis Kom. Acta Horti Petropol. 22: 112, 1903.
Syntype: Korea Septentrionalis, fluvium Jalu super., trajectus Zatan-ien, 24 VII 1897, V. L. Komarov.
Paratype: Korea Septentrionalis, ad jugum Zatan-ien, in silvis rupestribus, 24 VII 1897, V. L. Komarov.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 192, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Additional file 4: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591
Creators: name: Johnson, Katherine
name: Reynard, Louise
name: Loughlin, John
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Computational Biology

description: The seven transcript SNPs and their pair-wise Dâ   and r 2 values relative to rs9350591.
Additional file 1: of Sodium restriction in patients with cirrhotic ascites: a protocol for a systematic review
Creators: name: Walbaum, Benjamin
name: MarĂ­A Valda
name: Rada, Gabriel
Publisher: name: Figshare
Year: 2016
Subjects: subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Corresponds to PRISMA-P checklist. This checklist covers reporting standards for protocol of systematic reviews. The file mentions if these have been covered by the protocol, and where in the text these items are covered.
Additional file 6: Figure S5. of Multipotent luminal mammary cancer stem cells model tumor heterogeneity
Creators: name: Bao, Lei
name: Cardiff, Robert
name: Steinbach, Paul
name: Messer, Karen
name: Ellies, Lesley
Publisher: name: Figshare
Year: 2015
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: Divergent mammary cancer stem cell phenotypes. A. Enrichment plot of p53 pathway genes in LumA or Claudin-low MaCSCs. B. Real-time PCR validation of the seven most highly differentially expressed genes in the p53 pathway analysis. Data are means ± SEM of six independent tumor samples per group. All groups were significantly different at P <0.005 or more using the Holm-Sidak correction for multiple comparisons. C. EMT-associated gene expression in Py230 and Py15-4 cell lines. D. Confluent cultures of Py230 and Py15-4 MaCSCs treated for 48 hours with dexamethasone and prolactin. Arrowheads indicate dome formation. E. Relative expression of ß casein in Py230 and Py15-4 cultures treated for 48 hours with dexamethasone and prolactin. (PDF 476 kb)
title: Russian food inflation and world food prices
Creators: name: Krylov, Denis
Publisher: name: Bank of Russia
Year: 2024
Subjects: subject: Economics and business
subject: FOS: Economics and business

description: Movements in food prices have a major input in consumer price index and, thus, a significant impact on the living standards. Given the increased volatility of world food prices, it is essential that we understand the impact of this external driver of inflation on domestic price trends in order to produce a more accurate forecast of inflation and conduct a more efficient monetary policy. This work presents a VARX model applied to data from 2003 to 2021. Statistically significant impact of world food prices on domestic consumer and producer food prices in Russia was observed in 2003-2014, both at nation level and across its regions. After 2014, when there was a transition to a floating exchange rate, inflation targeting policy, accelerated development of import-substituting agricultural production and the Russian government employment of a more active trade policy in agriculture and food products, the average pass-through effect declined materially and is no longer statistically significant. The overall pass-through effect is greater in the case of rising world prices compared to decreasing world prices, while no statistically significant differences are found among regions. Meanwhile, the pass-through effect of world food prices on internal producer prices exhibits a significant regional heterogeneity.
Additional file 4: Figure S3. of Multipotent luminal mammary cancer stem cells model tumor heterogeneity
Creators: name: Bao, Lei
name: Cardiff, Robert
name: Steinbach, Paul
name: Messer, Karen
name: Ellies, Lesley
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Biotechnology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Plant Biology

description: Py230 cells are estrogen responsive. A. Py230 cells cultured on glass coverslips for 48 hours in F12K/DMEM media with 5 % fetal calf serum. B. Py230 cells cultured on glass coverslips for 48 hours in F12K/DMEM media without phenol red with 5 % charcoal-treated serum. C, D. 104 × Py230 cells injected into intact or OVX female mice were monitored over an eight-week period. Tumor volume and final tumor burden data indicated that the majority of Py230 tumors were sensitive to the presence of endogenous estrogen. Data are means ± SEM from 16 tumors in four mice per group. E,F. Tumors from the same dataset that have undergone epigenetic and/or genetic changes resulting in increased growth (encircled in D) have been removed. Data are means ± SEM from 15 tumors in intact mice and 13 tumors in OVX mice. Data are representative of two similar experiments. (PDF 504 kb)
Cynoctonum wilfordii Maxim.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Gentianales
Apocynaceae
Cynoctonum
Cynoctonum wilfordii

description: 11. Cynoctonum wilfordii Maxim.
Mél. Biol. Acad. Sci. Pétersb. 9: 799, 1876; idem, Bull. Acad. Sci. Pétersb. 23, 2: 369, 1877.
Syntype: Corea, port Chusan, 1859, C. Wilford.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 192, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Adontorhina Berry 1947
Creators: name: Barry, Peter J.
name: Mccormack, Grace P.
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Bivalvia
Lucinoida
Thyasiridae
Adontorhina

description: Genus Adontorhina Berry, 1947
Type species: Adontorhina cyclia Berry, 1947 Description. Shell small, fragile, compressed to orbicular; surface sculpture of smooth commarginal striae, radial sulcus reduced or lacking. Beaks prosogyrous, low on the dorsal margin. Periostracum thin, lightly straw coloured. Ligament mostly internal, set on a narrow sunken shelf posterior to the beaks. Hinge plate composed of two sections, both anterior and posterior to the beaks; without true teeth but with irregular granules varying between species from weakly to strongly expressed. All possess a single demibranch. Foot with heel, lateral pouches relatively small and undivided. Surface of lateral pouches has the appearance of arborescent tufts.
Remarks. The irregular granules on the hinge margin have only been reported in this genus. Indeed, when first discovered Berry (1947) recorded “I have been unable to find any described genus or species to which it can be referred”, owing to the uniqueness of the granular hinge. A large majority of the shells in the Thyasiridae have either edentulous hinges or underdeveloped tubercles instead of teeth (Payne & Allen, 1991). Coan et al. (2000) separated the externally similar Adontorhina from Leptaxinus Verrill & Bush, 1898, on the basis of the distinctive hinge. Scott (1986) remarked that there is wide variation in strength of expression of the irregular granules across the genus. While the granules on the hinge plate is the strongest character uniting the species of Adontorhina, all have a reduced sulcus, low umbones and the lateral pouches are undivided and not thrown into numerous lobes. The foot of each species is noticeably shortened with a deep sagittal groove.
description: Published as part of Barry, Peter J. & Mccormack, Grace P., 2007, Two new species of Adontorhina Berry, 1947 (Bivalvia: Thyasiridae) from the Porcupine Bank, off the west coast of Ireland, pp. 37-49 in Zootaxa 1526 on pages 38-39, DOI: 10.5281/zenodo.177538
Additional file 2: Figure S1. of Multipotent luminal mammary cancer stem cells model tumor heterogeneity
Creators: name: Bao, Lei
name: Cardiff, Robert
name: Steinbach, Paul
name: Messer, Karen
name: Ellies, Lesley
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biophysics
subject: Cell Biology
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Clonal MaCSC differentiation. A. Clonal single cells from FVB/N cell line Py9813 are K8K14-positive. Left panel stained with secondary antibody alone. B. Early colonies contain only double-positive cells. Scale bar 20 μm. C. In two-dimensional cultures, K8 + K14+ Py9813 cells can self-renew or differentiate to form single-positive K8 or K14-positive cells. Scale bar 20 μm. D. Py9813 cells form hollow mammospheres that show the presence of double-positive cells and K8 single-positive luminal cells. Single-positive myoepithelial cells are less commonly observed. Scale bar 20 μm. E. The percentage of double-positive, single-positive and double-negative cells in immunofluorescence-stained two-dimensional cultures. Analysis of variance showed the groups were highly significantly different, P <0.0001 and by Holm-Sidak’s multiple comparisons test, there were significantly fewer K8+ and K14+ cells compared with K8 + K14+ cells, P <0.0001, and significantly fewer K14+ cells than K8+ cells, P <0.01 in both cell lines. No double-negative cells were observed in cultures of either cell type. Data are means ± SEM. F. Cultures of control or 300 nM retinoic acid-treated Py9813 cells stained with oil red O. Scale bar 20 μm. (PDF 900 kb)
Additional file 3: Figure S2. of Multipotent luminal mammary cancer stem cells model tumor heterogeneity
Creators: name: Bao, Lei
name: Cardiff, Robert
name: Steinbach, Paul
name: Messer, Karen
name: Ellies, Lesley
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Plant Biology

description: Py230 MaCSCs recapitulate spontaneous tumorigenesis and metastasis. A. Left panel - A Py230 MIN outgrowth in the cleared mammary fat pad. Scale bar = 2 mm. Right panel - Higher magnification showing K5-positive cells (brown) lining the hyperplastic ductal structures. Scale bar = 100 μm. B. Tumor formed from a single Py230 cell injected into the cleared mammary fat pad of a three-week-old mouse. At 29 weeks the tumor showed microcystic and solid areas of adenocarcinoma. Scale bar 200 μm Lung metastases indicated by the white arrows were observed in whole mounts of the lung. Inset shows H&E-stained lung metastasis. Scale bar 100 μm. C. Lung metastases (black arrows) visualized in whole mounts of a lung from a wild-type mouse with a 10-cell Py230 tumor. Inset shows H&E-stained lung metastasis. Scale bar 100 μm. D. Percentage of tumors formed by varying numbers of Py230 cells injected in 2 mg/ml matrigel into the cleared mammary fat pads of three to four-week-old female mice. (PDF 911 kb)
Additional file 1: Table S1. of Multipotent luminal mammary cancer stem cells model tumor heterogeneity
Creators: name: Bao, Lei
name: Cardiff, Robert
name: Steinbach, Paul
name: Messer, Karen
name: Ellies, Lesley
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Plant Biology

description: Oligonucleotides. Table S2. Confusion matrix for the validation dataset. Table S3. Cell line properties. Table S4. 37 Geneset. (PDF 102 kb)
Additional file 5: Figure S4. of Multipotent luminal mammary cancer stem cells model tumor heterogeneity
Creators: name: Bao, Lei
name: Cardiff, Robert
name: Steinbach, Paul
name: Messer, Karen
name: Ellies, Lesley
Publisher: name: Figshare
Year: 2015
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Validation of expression array data by GSEA and RT-PCR. A. Gene set for mammary luminal progenitor cells is significantly enriched (P <0.001) in luminal versus claudin-low tumors. B. Gene set for mammary stem cells is not enriched in luminal versus claudin-low tumors. C. Genes downregulated in mammary stem cells are significantly enriched (P <0.01) in the Py230 luminal cell line compared with the Py16-1 claudin-low cell line. D. Confirmation of lower expression of several mammary luminal progenitor-associated genes in Py16-1, a claudin-low cell line compared with the parental Py230 cell line. E. Confirmation of higher expression of several mammary stem cell-associated genes in Py16-1, a claudin-low cell line compared with the parental Py230 cell line. F. Higher expression of genes downregulated in mammary stem cells in luminal Py230 cell line compared with claudin-low Py16-1. For each gene comparison *P <0.05, ***P <0.005, ****P <0.001 with Sidak’s correction for multiple comparisons, following two-way analysis of variance. Data are means ± SEM for three independent cultures per group. G. 35 independent tumors were examined for expression of each of the indicated markers. The results were compared with expression by normal prelactating mammary gland (PLMG), which is the normal control for highly proliferative mammary tumors and spontaneous PyVmT tumors (n = 4 per group). (PDF 386 kb)