cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Gauge Transformations, Twisted Poisson Brackets and Hamiltonization of Nonholonomic Systems
Creators: name: Balseiro, Paula
name: García-Naranjo, Luis
Publisher: name: arXiv
Year: 2011
Subjects: subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences
subject: 70F25, 70H06, 53D17

description: In this paper we study the problem of Hamiltonization of nonholonomic systems from a geometric point of view. We use gauge transformations by 2-forms (in the sense of Severa and Weinstein [29]) to construct different almost Poisson structures describing the same nonholonomic system. In the presence of symmetries, we observe that these almost Poisson structures, although gauge related, may have fundamentally different properties after reduction, and that brackets that Hamiltonize the problem may be found within this family. We illustrate this framework with the example of rigid bodies with generalized rolling constraints, including the Chaplygin sphere rolling problem. We also see how twisted Poisson brackets appear naturally in nonholonomic mechanics through these examples.
Additional file 1 of The intestinal microbial composition in Greylag geese differs with steatosis induction mode: spontaneous or induced by overfeeding
Creators: name: Knudsen, Christelle
name: Arroyo, Julien
name: Even, Maxime
name: Cauquil, Laurent
name: Pascal, Géraldine
name: Fernandez, Xavier
name: Lavigne, Franck
name: Davail, Stéphane
name: Combes, Sylvie
name: Ricaud, Karine
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Developmental Biology
subject: Cancer

description: Additional file 1: Supplemental Figure 1. Ambiant temperature and hygrometry in the experimental facility during the Ad libitum feeding (AF) period in the alternative breeding system (161 to 245 days of age). Supplemental Figure 2. Selection of PosSF and NegSF birds after the Ad libitum feeding period (245 days of age) in the alternative system. A) Body composition and B) biochemical composition of the livers in the different groups.
The cardiomap - a computerised signalling and metabolic map of heart failure mechanisms
Creators: name: Balaur, Irina
name: Berndt, Nikolaus
name: Ostaszewski, Marek
name: Mazein, Alexander
name: Wallach, Iwona
name: Narayanasamy, Shaman
name: Lebioda, Jacek
name: Muhammad, Shoaib
name: Schneider, Reinhard
name: Nordmeyer, Sarah
name: Kühne, Titus
name: Satagopam, Venkata
Publisher: name: Zenodo
Year: 2023
Subjects: heart failure, disease map, signalling pathway, metabolic model, expert revision, manual curation

description: Here, we introduce the development of the HeartMed cardiomap, which represents a collection of manually-curated diagrams representing metabolic and signalling pathways important for understanding different phenotypes of heart failure, and discuss ongoing and potential applications in the cardiac biomedical domain. The cardiomap is developed following the guidelines proposed by the Disease Maps Community Project: https://disease-maps.org/heartfailure/. Presentation was given at the International Symposium on Integrative Bioinformatics 2022, 16th annual meeting, 15th - 16th September 2022 @ University of Konstanz.
Population pharmacokinetics of lenalidomide in Chinese patients with influence of genetic polymorphisms of ABCB1
Creators: name: Liang, Xiaoxiao
name: Huang, Xin
Publisher: name: OSF Registries
Year: 2023
Subjects: subject: Medical Sciences
subject: Medicine and Health Sciences

description: Affected by differences in the pharmacokinetics (PK) of lenalidomide, the toxicity of lenalidomide varies among different patients, with severe toxicity leading to dose reduction or discontinuation. The differences in the PK of lenalidomide may be related to factors such as patients’ physiological characteristics, pathological characteristics and gene polymorphisms et al., which may also affect its toxicity. The aim of this study is to establish a population pharmacokinetic (PPK) model of lenalidomide and explore factors associated with the adverse events (AEs) of lenalidomide from a PK perspective.
Additional file 2 of The intestinal microbial composition in Greylag geese differs with steatosis induction mode: spontaneous or induced by overfeeding
Creators: name: Knudsen, Christelle
name: Arroyo, Julien
name: Even, Maxime
name: Cauquil, Laurent
name: Pascal, Géraldine
name: Fernandez, Xavier
name: Lavigne, Franck
name: Davail, Stéphane
name: Combes, Sylvie
name: Ricaud, Karine
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Developmental Biology
subject: Cancer

description: Additional file 2: Supplemental Table 1. Pairwise Adonis tests between groups. Supplemental Table 2 Relative abundance (%) of the top 10 OTUs contributing to PLS-DA axis 1 on PosSF and NegSF groups. Supplemental Table 3. Relative taxonomic abundance (in %) in ileal content at phyla level according to the experimental group. Supplemental Table 4. Relative taxonomic abundance (in %) in ileal content at family level according to the experimental group. Supplemental Table 5. Relative taxonomic abundance (in %) in ileal content at genus level according to the experimental group.
Lifshitz-like Janus Solutions
Creators: name: Nishioka, Tatsuma
name: Tanaka, Hiroaki
Publisher: name: arXiv
Year: 2010
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We construct Lifshitz-like Janus solutions in the Einstein-scalar theory with cosmological constant in arbitrary dimensions. They are holographically dual to z=2 Lifshitz-like field theories with a defect. The four-dimensional solutions can be embedded into type IIB supergravity as dilatonic deformations of AdS_5 x Y^5 with three-form field strengths, where Y^5 is a five-dimensional Einstein manifold.
description: 19 pages, 5 figures; v2: minor corrections
Additional file 1 of Cardiovascular magnetic resonance reference values of mitral and tricuspid annular dimensions: the UK Biobank cohort
Creators: name: Ricci, Fabrizio
name: Aung, Nay
name: Gallina, Sabina
name: Zemrak, Filip
name: Fung, Kenneth
name: Bisaccia, Giandomenico
name: Paiva, Jose Miguel
name: Khanji, Mohammed Y.
name: Mantini, Cesare
name: Palermi, Stefano
name: Lee, Aaron M.
name: Piechnik, Stefan K.
name: Neubauer, Stefan
name: Petersen, Steffen E.
Publisher: name: figshare
Year: 2021
Subjects: Medicine
Neuroscience
Marine Biology

description: Additional file 1. Additional reference ranges. Tables reporting additional normal reference ranges of mitral and tricuspid annular dimensions and tethering indices.
Quantum light by atomic arrays in optical resonators
Creators: name: Habibian, Hessam
name: Zippilli, Stefano
name: Morigi, Giovanna
Publisher: name: arXiv
Year: 2011
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Light scattering by a periodic atomic array is studied when the atoms couple with the mode of a high-finesse optical resonator and are driven by a laser. When the von-Laue condition is not satified, there is no coherent emission into the cavity mode, and the latter is pumped via inelastic scattering processes. We consider this situation and identify conditions for which different non-linear optical processes can occur. We show that these processes can be controlled by suitably tuning the strength of laser and cavity coupling, the angle between laser and cavity axis, and the array periodicity. We characterize the coherence properties of the light when the system can either operate as degenerate parametric amplifier or as a source of antibunched-light. Our study permits us to identify the individual multi-photon components of the nonlinear optical response of the atomic array and the corresponding parameter regimes, thereby in principle allowing one for controlling the nonlinear optical response of the medium.
description: 11 pages, 10 figures, version to appear in Phys. Rev. A
Additional file 1 of Perceived barriers to seeking cancer care in the Gaza Strip: a cross-sectional study
Creators: name: Elshami, Mohamedraed
name: Bottcher, Bettina
name: Alkhatib, Mohammed
name: Ismail, Iyad
name: Khitam Abu-Nemer
name: Hana, Mustafa
name: Qandeel, Ahmed
name: Abdelwahed, Ahmed
name: Yazji, Hamza
name: Abuamro, Hisham
name: Ghadeer Matar
name: Alsahhar, Ahmed
name: Abolamzi, Ahmed
name: Obay Baraka
name: Elblbessy, Mahmood
name: Tahani Samra
name: Alshorbassi, Nabeela
name: Elshami, Alaa
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1.
The search for long-term variations in the orbits of Hot Jupiters
Creators: name: Hagey, Simone R.
Publisher: name: University of British Columbia
Year: 2022

description: The work encompassed in this thesis is motivated by the search for long-term variations in the orbits of Hot Jupiters to understand their past and future evolution. I analyze a large number of citizen science data and identify eight Hot Jupiter systems that show evidence for deviations from a constant orbital period: HAT-P-19b, HAT-P-32b, TrES-1b, TrES-2b, TrES- 5b, WASP-4b, WASP-10b, and WASP-12b. The latter system is already well known to exhibit strong evidence for tidal orbital decay and serves as an important control for this study. Several other identified systems have disputed period drifts in the literature, allowing the results here to serve as an independent analysis. The citizen science data are from the Exoplanet Transit Database (ETD), which is a global project established in 2008 by the Variable Star and Exoplanet Section of the Czech Astronomical Society. With over 400 planets and 12,000 contributed observations spanning 15 years, the ETD is brimming with potential for studying the long-term orbital evolution of close-in Hot Jupiters. I use our results to discuss prioritization of targets for follow up investigations, which will be necessary to confirm the period drifts and their causes.
Evaluating The Accuracy of Classification Algorithms for Detecting Heart Disease Risk
Creators: name: Alariyibi, Alhaam
name: El-Jarai, Mohamed
name: Maatuk, Abdelsalam
Publisher: name: arXiv
Year: 2023
Subjects: subject: Machine Learning (cs.LG)
subject: Artificial Intelligence (cs.AI)
subject: Computers and Society (cs.CY)
subject: FOS: Computer and information sciences

description: The healthcare industry generates enormous amounts of complex clinical data that make the prediction of disease detection a complicated process. In medical informatics, making effective and efficient decisions is very important. Data Mining (DM) techniques are mainly used to identify and extract hidden patterns and interesting knowledge to diagnose and predict diseases in medical datasets. Nowadays, heart disease is considered one of the most important problems in the healthcare field. Therefore, early diagnosis leads to a reduction in deaths. DM techniques have proven highly effective for predicting and diagnosing heart diseases. This work utilizes the classification algorithms with a medical dataset of heart disease; namely, J48, Random Forest, and Naïve Bayes to discover the accuracy of their performance. We also examine the impact of the feature selection method. A comparative and analysis study was performed to determine the best technique using Waikato Environment for Knowledge Analysis (Weka) software, version 3.8.6. The performance of the utilized algorithms was evaluated using standard metrics such as accuracy, sensitivity and specificity. The importance of using classification techniques for heart disease diagnosis has been highlighted. We also reduced the number of attributes in the dataset, which showed a significant improvement in prediction accuracy. The results indicate that the best algorithm for predicting heart disease was Random Forest with an accuracy of 99.24%.
MPEC 2023-J96 : 2023 JS
Creators: name: Minor Planet Center Staff
Publisher: name: The Minor Planet Center
Year: 2023
Subjects: subject: Small Solar System bodies
valueUri: http://astrothesaurus.org/uat/1469
subject: 2023 JS

description: The Minor Planet Electronic Circulars contain information on unusual minor planets, routine data on comets and natural satellites, and occasional editorial announcements.  They are published on behalf of Division F of the International Astronomical Union by the Minor Planet Center, Smithsonian Astrophysical Observatory, Cambridge, MA 02138, U.S.A.
Feature Analysis of Encrypted Malicious Traffic
Creators: name: Shekhawat, Anish Singh
name: Di Troia, Fabio
name: Stamp, Mark
Publisher: name: arXiv
Year: 2023
Subjects: subject: Cryptography and Security (cs.CR)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: In recent years there has been a dramatic increase in the number of malware attacks that use encrypted HTTP traffic for self-propagation or communication. Antivirus software and firewalls typically will not have access to encryption keys, and therefore direct detection of malicious encrypted data is unlikely to succeed. However, previous work has shown that traffic analysis can provide indications of malicious intent, even in cases where the underlying data remains encrypted. In this paper, we apply three machine learning techniques to the problem of distinguishing malicious encrypted HTTP traffic from benign encrypted traffic and obtain results comparable to previous work. We then consider the problem of feature analysis in some detail. Previous work has often relied on human expertise to determine the most useful and informative features in this problem domain. We demonstrate that such feature-related information can be obtained directly from machine learning models themselves. We argue that such a machine learning based approach to feature analysis is preferable, as it is more reliable, and we can, for example, uncover relatively unintuitive interactions between features.
Scientific Data Migration to the DataStaR Semantic Platform
Creators: name: Borycz, Joshua
name: Greeson, Samantha
name: Back, Heather
Publisher: name: Zenodo
Year: 2019
Subjects: DataStar
VITRO
VIVO
Data
Data Management
Library
STEM
Information Science

description: Presentation for mock grant proposal: https://app.dimensions.ai/details/grant/grant.3078607

Based on a project at Cornell University: https://ecommons.cornell.edu/handle/1813/12668?show=full

This project is designed to simplify the process for organizing, storing, and sharing data for science researchers at the University of Tennessee, Knoxville. The DataStaR (Data Staging Repository) infrastructure from Cornell University will be implemented into an institutional server to help faculty and students prepare their data for publication in public repositories. The goal is to simplify the data sharing process to fulfill requirements for research grants and to increase the accessibility of academic and research data at the University of Tennessee, Knoxville and collaborating institutions.
The UK Climate Change Committee, 2009 to 2020: A mixed methods analysis of its statutory advisory functions, recommendations, and policy influence
Creators: name: Dudley, Harriet
Publisher: name: University of East Anglia
Year: 2024
Subjects: subject: Climate policy

description: Climate advisory bodies have proliferated in recent decades and are now established in over 40 countries. Their primary role is to produce recommendations for national policymakers. Some scholars contend such bodies are critical for effective climate governance and assert policymakers increasingly rely on their recommendations. Despite these claims, very little is known about their functions, recommendations, and influence on mitigation and – especially - adaptation policy. 

This thesis focuses on the UK Climate Change Committee (CCC), the oldest advisory body of its kind in the world, in the period 2009 to 2020. Through a mixed methods analysis of over 300 documents and 700 of the CCC’s recommendations, it examines how and why the CCC’s advisory functions were formulated in the 2008 Climate Change Act and explores the characteristics of its recommendations, including their repetition. It combines insights from a regression analysis of the government’s written responses to its recommendations and 36 elite interviews to reveal the conditions under which the CCC’s recommendations were used by UK Government officials, or not. In short, the CCC’s influence was instrumental under some conditions, such as during or following extreme weather events, and it slowly shifted the thinking of actors under other conditions, particularly through the slow and steady diffusion of its recommendations into the policy system.

This thesis makes three original contributions to the existing literature. First, it provides a novel synthesis of the literatures on knowledge utilisation and climate policy. It offers a conceptual framework to analyse the conditions under which recommendations are more likely to be used by policymakers. It identifies four causal conditions, empirically tests these claims, and inductively reveals a further four conditions. Second, it provides novel insights into why the CCC’s statutory advisory functions were circumscribed, including concerns about its balance of power with the government. Third, it reveals that, whilst the characteristics of recommendations do influence how they are used, if at all, exogenous conditions were predominant, particularly stakeholder support, the prevailing policy context, and the political priorities of the incumbent government. Interviews with government officials provide detailed insights into the internal politics that ultimately determined whether, how, and why the CCC’s recommendations were used.
Dynamical Transition in the Open-boundary Totally Asymmetric Exclusion Process
Creators: name: Proeme, A.
name: Blythe, R. A.
name: Evans, M. R.
Publisher: name: arXiv
Year: 2010
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We revisit the totally asymmetric simple exclusion process with open boundaries (TASEP), focussing on the recent discovery by de Gier and Essler that the model has a dynamical transition along a nontrivial line in the phase diagram. This line coincides neither with any change in the steady-state properties of the TASEP, nor the corresponding line predicted by domain wall theory. We provide numerical evidence that the TASEP indeed has a dynamical transition along the de Gier-Essler line, finding that the most convincing evidence was obtained from Density Matrix Renormalisation Group (DMRG) calculations. By contrast, we find that the dynamical transition is rather hard to see in direct Monte Carlo simulations of the TASEP. We furthermore discuss in general terms scenarios that admit a distinction between static and dynamic phase behaviour.
description: 27 pages, 18 figures. v2 to appear in J Phys A features minor corrections and better-quality figures
All Polarized but Still Different: a Multi-factorial Metric to Discriminate between Polarization Behaviors on Social Media
Creators: name: Treuillier, Celina
name: Castagnos, Sylvain
name: Brun, Armelle
Publisher: name: arXiv
Year: 2023
Subjects: subject: Social and Information Networks (cs.SI)
subject: Physics and Society (physics.soc-ph)
subject: FOS: Computer and information sciences
subject: FOS: Physical sciences

description: Online polarization has attracted the attention of researchers for many years. Its effects on society are a cause for concern, and the design of personalized depolarization strategies appears to be a key solution. Such strategies should rely on a fine and accurate measurement, and a clear understanding of polarization behaviors. However, the literature still lacks ways to characterize them finely. We propose GRAIL, the first individual polarization metric, relying on multiple factors. GRAIL assesses these factors through entropy and is based on an adaptable Generalized Additive Model. We evaluate the proposed metric on a Twitter dataset related to the highly controversial debate about the COVID-19 vaccine. Experiments confirm the ability of GRAIL to discriminate between polarization behaviors. To go further, we provide a finer characterization and explanation of the identified behaviors through an innovative evaluation framework.
description: ACM/SIGAPP Symposium On Applied Computing, Apr 2024, Avila, Spain
Transcriptome-supervised classification of tissue morphology using deep learning
Creators: name: Andersson, Axel
name: Partel, Gabriele
name: Solorzano, Leslie
name: Wählby, Carolina
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantitative Methods (q-bio.QM)
subject: Image and Video Processing (eess.IV)
subject: FOS: Biological sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: Deep learning has proven to successfully learn variations in tissue and cell morphology. Training of such models typically relies on expensive manual annotations. Here we conjecture that spatially resolved gene expression, e.i., the transcriptome, can be used as an alternative to manual annotations. In particular, we trained five convolutional neural networks with patches of different size extracted from locations defined by spatially resolved gene expression. The network is trained to classify tissue morphology related to two different genes, general tissue, as well as background, on an image of fluorescence stained nuclei in a mouse brain coronal section. Performance is evaluated on an independent tissue section from a different mouse brain, reaching an average Dice score of 0.51. Results may indicate that novel techniques for spatially resolved transcriptomics together with deep learning may provide a unique and unbiased way to find genotype-phenotype relationships.
description: Accepted for publication at IEEE International Symposium on Biomedical Imaging (ISBI) 2020
Fixed point theorems in plane continua with applications
Creators: name: Blokh, Alexander M.
name: Fokkink, Robbert J.
name: Mayer, John C.
name: Oversteegen, Lex G.
name: Tymchatyn, E. D.
Publisher: name: arXiv
Year: 2010
Subjects: subject: General Topology (math.GN)
subject: Dynamical Systems (math.DS)
subject: Geometric Topology (math.GT)
subject: FOS: Mathematics
subject: 37C25, 54H25 (Primary) 37F10, 37F50, 37B45, 37F10, 54C10 (Secondary)

description: We present proofs of basic results, including those developed by Harold Bell, for the plane fixed point problem: does every map of a non-separating plane continuum have a fixed point? Some of these results had been announced much earlier by Bell but without accessible proofs. We define the concept of the variation of a map on a simple closed curve and relate it to the index of the map on that curve: Index = Variation + 1. A fixed point theorem for positively oriented, perfect maps of the plane is obtained. This generalizes results announced by Bell in 1982. A continuous map of an interval to the real line which sends the endpoints in opposite directions has a fixed point. We generalize this to maps on non-invariant continua in the plane under positively oriented maps of the plane (with appropriate boundary conditions). These methods imply that in some cases non-invariant continua in the plane are degenerate. This has important applications in complex dynamics. E.g., a special case of our results shows that if $X$ is a non-separating invariant subcontinuum of the Julia set of a polynomial $P$ containing no fixed Cremer points and exhibiting no local rotation at all fixed points, then $X$ must be a point. It follows that impressions of some external rays to polynomial Julia sets are degenerate.
description: 107 pages, 10 figures; the preprint expands and combines several earlier preprints; to appear in the Memoirs of the American Mathematical Society
MPEC 2023-J97 : 2023 HV8
Creators: name: Minor Planet Center Staff
Publisher: name: The Minor Planet Center
Year: 2023
Subjects: subject: Small Solar System bodies
valueUri: http://astrothesaurus.org/uat/1469
subject: 2023 HV8

description: The Minor Planet Electronic Circulars contain information on unusual minor planets, routine data on comets and natural satellites, and occasional editorial announcements.  They are published on behalf of Division F of the International Astronomical Union by the Minor Planet Center, Smithsonian Astrophysical Observatory, Cambridge, MA 02138, U.S.A.
Pandemic transformations and settler discourse stabilities in Canadian English-language teacher identity
Creators: name: Detwyler, Dmitri
Publisher: name: University of British Columbia
Year: 2022

description: The outbreak of the global COVID-19 pandemic in spring 2020 prompted a shift to emergency remote teaching (ERT) in many regions. This dissertation study investigates the nature and impacts of the ERT transition on the professional knowledge and identities-in-discourse of English language teaching (ELT) instructors in Canada. It adopts a discursive constructionist perspective framed by discursive psychology to show how occasioned descriptions by participants in research encounters made visible various disruptions and stabilities in Canadian ELT early in the pandemic. The methods included individual interviews, focus groups, vignette responses, and written reflections with 15 ELT instructors in the Canadian postsecondary, adult education, and for-profit education sectors. This manuscript-based dissertation includes three independent, interrelated manuscripts. In each I apply thematic and discourse analysis to selected data subsets as a product of situated social practice by attending to how the data were co-constructed through participant interaction with me. The first paper describes how ELT instructors in one representative program navigated digital inequities among their learners, balanced digital literacies and language teaching in an accountability framework, and managed boundaries and expectations ‘up’ and ‘down’ in the language-program hierarchy. The second paper identifies, across Canada’s ELT sectors, cascading flows of vulnerability from students onto instructors; socio-technical supports for teaching that were described as constraints; and intertwining economic and existential anxieties. The third paper shows how settler-colonial histories and discursive hierarchies of language and nationality were circulated in interaction as a settlement English and postsecondary instructor performed expert identities in accounts of pandemic teaching practice. This project makes two key contributions to applied linguistics and TESOL. In reporting on adaptations by ELT instructors in the initial ERT transition, it shows how defining patterns of the Canadian ELT profession, including precarious employment in the neoliberal economy and settler-colonial histories, were made visible in my interactions with participants at a unique moment of historical disruption. Methodologically, this project underscores the importance of reflexivity for ELT research and advances an understanding of language-teacher identities-in-discourse. I suggest this methodological realignment may help address the longstanding gap between ELT theory and practice.
Hidden Grassmann structure in the XXZ model V: sine-Gordon model
Creators: name: Jimbo, M.
name: Miwa, T.
name: Smirnov, F.
Publisher: name: arXiv
Year: 2010
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We study one-point functions of the sine-Gordon model on a cylinder. Our approach is based on a fermionic description of the space of descendent fields, developed in our previous works for conformal field theory and the sine-Gordon model on the plane. In the present paper we make an essential addition by giving a connection between various primary fields in terms of yet another kind of fermions. The one-point functions of primary fields and descendants are expressed in terms of a single function defined via the data from the thermodynamic Bethe Ansatz equations.
description: 36 pages. Some corrections are done in latest version, especially in the subsection 10.3
Additional file 1 of Impact of the acidic environment on gene expression and functional parameters of tumors in vitro and in vivo
Creators: name: Rauschner, Mandy
name: Lange, Luisa
name: Hüsing, Thea
name: Reime, Sarah
name: Nolze, Alexander
name: Maschek, Marcel
name: Thews, Oliver
name: Riemann, Anne
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer

description: Additional file 1. Additional material (tables and figures) is provided in the “Additional file 1“. Tab. S1. Primers used for qPCR. Tab. S2. Gene ontology analysis for acidosis-regulated genes in cells and tumors. Fig. S1. Venn diagrams of genes regulated by acidosis. Fig. S2. Comparison of NGS results in vitro and in vivo. Fig. S3. mRNA expression after 48 h acidosis. Fig. S4. Comparison of the impact of acidosis in vitro and in vivo. Fig. S5. Wound closure and migration distance during acidosis. Fig. S6. Cellular oxygen consumption during acidosis. Fig. S7. Tumor cell proliferation during long-term acidosis. Fig. S8. Gene expression of tumor cells chronically adapted to acidosis. The raw data of the NGS analyses are available via: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE162705
Gravitational wave energy spectrum of a parabolic encounter
Creators: name: Berry, Christopher P. L.
name: Gair, Jonathan R.
Publisher: name: arXiv
Year: 2010
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: We derive an analytic expression for the energy spectrum of gravitational waves from a parabolic Keplerian binary by taking the limit of the Peters and Matthews spectrum for eccentric orbits. This demonstrates that the location of the peak of the energy spectrum depends primarily on the orbital periapse rather than the eccentricity. We compare this weak-field result to strong-field calculations and find it is reasonably accurate (~10%) provided that the azimuthal and radial orbital frequencies do not differ by more than ~10%. For equatorial orbits in the Kerr spacetime, this corresponds to periapse radii of rp > 20M. These results can be used to model radiation bursts from compact objects on highly eccentric orbits about massive black holes in the local Universe, which could be detected by LISA.
description: 5 pages, 3 figures. Minor changes to match published version; figure 1 corrected; references added
Additional file 1 of Living with a recalled implant: a qualitative study of patients’ experiences with ASR hip resurfacing arthroplasty
Creators: name: Bitar, Christian
name: Krupic, Ferid
name: Felländer-Tsai, Li
name: Crnalic, Sead
name: Wretenberg, Per
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy

description: Additional file 1.
Additional file 1 of Lifestyle modifications result in alterations in the gut microbiota in obese children
Creators: name: Cho, Ky Young
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Computational Biology

description: Additional file 1. Questionnaire on general lifestyle and eating habits.
Can Ultrahigh Energy Cosmic Rays Come from Gamma-Ray Bursts? II: Cosmic Rays Below the Ankle and Galactic GRB
Creators: name: Eichler, David
name: Pohl, Martin
Publisher: name: arXiv
Year: 2011
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: The maximum cosmic ray energy achievable by acceleration by a relativistic blast wave is derived. It is shown that forward shocks from long GRB in the interstellar medium are powerful enough to produce the Galactic cosmic-ray component up to the ankle at $4\times 10^{18}$eV, as per an earlier suggestion (Levinson and Eichler, 1993). It is further argued that, were extragalactic long GRB responsible for the component {\it above} the ankle as well, the contribution from an occasional Galactic GRB within the solar circle would yield more than the observational limits on the outward flux from the solar circle, unless intermittency and/or beaming causes the present-day contribution to be less than $10^{-3}$ times the time average, and difficulties with these avoidance scenarios are also noted.
Additional file 3 of Lifestyle modifications result in alterations in the gut microbiota in obese children
Creators: name: Cho, Ky Young
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Computational Biology

description: Additional file 3: Fig. S1. The alpha rarefaction plots for the observed_OTUs index in the baseline study, including the controls and preintervention stages of the fat loss and fat gain groups (a), and the intervention study, including the pre- and postintervention stages in the fat loss and fat gain groups (b). Fig. S2. Principal coordinate analysis based on the weighted Unifrac distance between the pre- and postintervention stages in the fat loss (a) and fat gain groups (b).
Additional file 2 of Lifestyle modifications result in alterations in the gut microbiota in obese children
Creators: name: Cho, Ky Young
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Computational Biology

description: Additional file 2: Table S1. Comparison of the Anthropometric Measurements and Blood Biochemical Findings between the Fat Loss and Fat Gain Groups in the Pre- and Postintervention Stages. Table S2. The Characteristics of the Normal Weight and the Preitervention Stages in the Fat Loss and Fat Gain Groups.
Additional file 1 of Micro-RNA-125a mediates the effects of hypomethylating agents in chronic myelomonocytic leukemia
Creators: name: Berg, Johannes Lorenz
name: Perfler, Bianca
name: Hatzl, Stefan
name: Marie-Christina Mayer
name: Wurm, Sonja
name: Uhl, Barbara
name: Reinisch, Andreas
name: Klymiuk, Ingeborg
name: Tierling, Sascha
name: Pregartner, Gudrun
name: Bachmaier, Gerhard
name: Berghold, Andrea
name: Geissler, Klaus
name: Pichler, Martin
name: Hoefler, Gerald
name: Strobl, Herbert
name: Wölfler, Albert
name: Sill, Heinz
name: Zebisch, Armin
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Marine Biology
subject: Cancer
subject: Science Policy
subject: Hematology

description: Additional file 1. Supplementary information.
Quantum Fourier transform, Heisenberg groups and quasiprobability distributions
Creators: name: Patra, Manas K.
name: Braunstein, Samuel L.
Publisher: name: arXiv
Year: 2010
Subjects: subject: Mathematical Physics (math-ph)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: This paper aims to explore the inherent connection among Heisenberg groups, quantum Fourier transform and (quasiprobability) distribution functions. Distribution functions for continuous and finite quantum systems are examined first as a semiclassical approach to quantum probability distribution. This leads to studying certain functionals of a pair of "conjugate" observables, connected via the quantum Fourier transform. The Heisenberg groups emerge naturally from this study and we take a rapid look at their representations. The quantum Fourier transform appears as the intertwining operator of two equivalent representation arising out of an automorphism of the group. Distribution functions correspond to certain distinguished sets in the group algebra. The marginal properties of a particular class of distribution functions (Wigner distributions) arise from a class of automorphisms of the group algebra of the Heisenberg group. We then study the reconstruction of Wigner function from the marginal distributions via inverse Radon transform giving explicit formulas. We consider applications of our approach to quantum information processing and quantum process tomography.
description: 39 pages
Effect of the BaO-Na$_2$O-Nb$_2$O$_5$-P$_2$O$_5$ glass addition on microstructure and dielectric properties of BNN ceramics
Creators: name: Ihyadn, Abderrahim
name: Mezzane, Daoud
name: Amjoud, Mbarek
name: Lahmar, Abdelilah
name: Bih, Lahcen
name: Alimoussa, Abdelhadi
name: Lukyanchuk, Igor
name: Marssi, Mimoun El
Publisher: name: arXiv
Year: 2023
Subjects: subject: Applied Physics (physics.app-ph)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Barium sodium niobate Ba$_2$NaNb$_5$O$_{15}$ (BNN) ceramics with different amounts of BaO-Na$_2$O-Nb$_2$O$_5$-P$_2$O$_5$ (BNNP) glass were prepared via the conventional solid-state method. The effect of glass content on the structural, microstructure, and dielectric properties of BNN ceramics was investigated. The XRD results showed that no secondary phase was formed after adding BNNP glass. It was found that such additions reduce the average grain size and refine the microstructure of the obtained ceramics. Moreover, the samples exhibited a stable dielectric constant over the temperature range of 25$^\circ$C-150$^\circ$C, and their dielectric constants were significantly improved. The ceramic with 7.5 wt% BNNP glass content showed a dielectric constant which is more than twice as much as that of pure BNN ceramic, as well as a low dielectric loss of less than 5%.
description: 5 pages, 5 figures
K-theory of locally finite graph $C^*$-algebras
Creators: name: Iyudu, Natalia
Publisher: name: arXiv
Year: 2010
Subjects: subject: Operator Algebras (math.OA)
subject: Group Theory (math.GR)
subject: K-Theory and Homology (math.KT)
subject: Rings and Algebras (math.RA)
subject: FOS: Mathematics
subject: 05c50, 05c63, 46l80, 46l35, 16b50

description: We calculate the K-theory of the Cuntz-Krieger algebra ${\cal O}_E$ associated with an infinite, locally finite graph, via the Bass-Hashimoto operator. The formulae we get express the Grothendieck group and the Whitehead group in purely graph theoretic terms. We consider the category of finite (black-and-white, bi-directed) subgraphs with certain graph homomorphisms and construct a continuous functor to abelian groups. In this category $K_0$ is an inductive limit of $K$-groups of finite graphs, which were calculated in \cite{MM}. In the case of an infinite graph with the finite Betti number we obtain the formula for the Grothendieck group $K_0({\cal O}_E)= {\mathbb Z}^{β(E)+γ(E)},\,$ where $β(E)$ is the first Betti number and $γ(E)$ is the valency number of the graph $E$. We note, that in the infinite case the torsion part of $K_0$, which is present in the case of a finite graph, vanishes. The Whitehead group depends only on the first Betti number: $K_1({\cal O}_E)= {\mathbb Z}^{β(E)}$. These allow us to provide a counterexample to the fact, which holds for finite graphs, that $K_1({\cal O}_E)$ is the torsion free part of $K_0({\cal O}_E)$.
description: Final version, in press at the Journal of Geometry and Physics (2013)
Additional file 1 of Influence of healthy lifestyle behaviors on life satisfaction in the aging population of Thailand: a national population-based survey
Creators: name: Phulkerd, Sirinya
name: Sasinee Thapsuwan
name: Aphichat Chamratrithirong
name: Rossarin Soottipong Gray
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1: Supplementary File 1. The 2018 Survey Questionnaire on Fruit and Vegetable Consumption among Thai People.
Additional file 1 of Using electronic patient records to assess the effect of a complex antenatal intervention in a cluster randomised controlled trial—data management experience from the DESiGN Trial team
Creators: name: Relph, Sophie
name: Elstad, Maria
name: Coker, Bolaji
name: Vieira, Matias C.
name: Moitt, Natalie
name: Gutierrez, Walter Muruet
name: Khalil, Asma
name: Sandall, Jane
name: Copas, Andrew
name: Lawlor, Deborah A.
name: Pasupathy, Dharmintra
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Immunology
subject: FOS: Clinical medicine
subject: Information Systems not elsewhere classified
subject: Science Policy

description: Additional file 1. Data query for neonatal Badgernet. Code used to generate the dataset from neonatal Badgernet software at each research site.
Региональное и локальное самосознание жителей малых городов Центральной России
Creators: name: Ямсков А.Н.
Publisher: name: Zenodo
Year: 2017
Subjects: малые города, территориальная идентичность, молодёжь, региональная (областная) самоидентификация, локальная (районная) самоидентификация

description: Анкетирование школьников 11-х классов в малых городах Белёве Тульской области и Старице Тверской области показало, что в ответах на открытый вопрос о территориальной самоидентификации подавляющее большинство из них демонстрирует приоритет регионального (областного) самосознания при значительной роли общероссийской идентичности. Однако, при ранжировании значения разных уровней идентичности и возможности выбора локальной (городской и/или районной), последняя становится столь же важной, как и региональная, в Белёве, и лишь незначительно уступает региональной (областной) территориальной идентификации в Старице.
Restructuring a Literature Search Service: Preliminary Data
Creators: name: Hoffecker, Lilian
name: Desanto, Kristen
name: Harnke, Ben
name: McHale, Nina
Publisher: name: Zenodo
Year: 2019
Subjects: literature searching
library services
systematic reviews
Medical Library Association

description: Background

Literature searches at the authors' library were conducted by one or two librarians until recently, each of whom approached their searches individually. They conducted their searches with little consistency in their approaches or systematic record-keeping. But as requests for searches increased, we made the decision to transform the service so that multiple searchers can participate while producing consistent results. At the 2018 MLA conference, the authors reported on building a literature search service at an academic health sciences library. Here, we describe how it has progressed and what we've learned about the service as we expand data collection.

Description

An online database was developed with the help of an IT professional for patrons to make requests and for searchers to enter detailed data for each search request. For example, the database collects information on the amount of time spent for each project, nature of the search topic, details of the collaborators involved, co-authorship for the librarian, the status of reports and publications, and payment information for paid searches. The database went live in mid-October 2018 and we can now report with specificity on the search service.

Conclusion

Since July 2018 and as of early April 2019, the database shows a total of 62 searches, 22 or 35% are for systematic reviews. 61% involved librarian co-authorship and most of these publications were systematic reviews.  Librarian searchers spent 2,241 hours on these searches in the 9 month period. These data are valuable for adapting our literature search service to meet needs of our users and for making appropriate decisions about library service priorities.
Epidemic modeling of a simple respiratory pathogen
Creators: name: Virk, Navjot
Publisher: name: University of British Columbia
Year: 2022

description: Since the emergence of COVID-19, several vaccines have been rolled out at a rapid rate, but the uptake of vaccines is not high enough to eradicate the virus globally. Although most of the population has gotten their vaccines, there is a small number of people who are resistant to receiving vaccine and will never get vaccinated. This is one of the greatest threats to global public health as it could lead to the reemergence of previously eliminated diseases. We proposed a new modified SIR-vaccination model to study the transmission dynamics of COVID-19. We included the impact of individuals who choose to be vaccinated and individuals who choose not to be vaccinated on the final size of the epidemic, in homogeneously and heterogeneously mixed populations. In the homogeneous mixing model, we further analyze two cases: first, where the vaccination campaign has already happened and the second, where the vaccination campaign is happening dynamically during the epidemic. It is shown that both homogeneous and heterogeneous mixing models have a conditionally stable disease-free equilibrium. The reproduction number is derived analytically using the next generation matrix. Using numerical simulations, we investigated the effect of different mixing scenarios between vaccinated and unvaccinated individuals on the final epidemic size and the maximum number of infected people during the epidemic. It is found that as the number of people choosing to never be vaccinated increases, the final epidemic size and the maximum number infected at any time during the epidemic increase as well. We provide interpretation of the results in the context of practical epidemiology, especially vaccination during the epidemic.