cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Nigeria's energy transition plan into low- carbon economy
Creators: name: Olagoke, Samson Bolarinwa
name: GEOFFREY, KAMAAN JALO
Publisher: name: Zenodo
Year: 2024

description: The Nigerian energy transition plan into low-carbon economy was modelled using OSeMOSYS in this research. Three scenarios were modelled to achieve the objectives of the study, BAU, RE36 and NPP. The objectives were to achieve increased electricity generation and cut down on CO2 emissions as Nigeria moves to net zero by 2060. The models were calibrated and run to obtain Installed Power Capacity, Power Generation, Total Annual Cost and Annual Emissions for the three scenarios. The BAU scenario was seen to have the highest CO2 emission of about 240Mt and most expensive to run compared to the other scenarios  over the modelled period of 2015-2050. The  RE36 provided increased electricity power generation and a decrease in CO2 emissions. NPP showed a further decline emissions below 150Mt.
Additional file 1 of Functional difficulty among children in Malaysia – findings from the National Health and Morbidity Survey (NHMS) 2019
Creators: name: Sahril, Norhafizah
name: Chan, Ying Ying
name: Ahmad, Noor Ani
name: Aznuddin Abd Razak, Mohamad
name: Rezali, Muhammad Solihin
name: Wahab, Nor’Ain Ab
name: Azlan Kassim, Mohd Shaiful
name: Abdul Rahim, Norsyamlina Che
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Neuroscience
Biotechnology
Science Policy
Mental Health
Computational Biology

description: Supplementary Material 1
Public libraries, digital literacy and participatory culture
Creators: name: McShane, Ian
Publisher: name: Swinburne
Year: 2024

description: In recent years public libraries have experimented with user generated or community contributed content through the interactive tools of Web 2.0. For some commentators this establishes not just a new relationship between libraries and their publics, but signals the end of information hegemony and an 'expert paradigm'. Such claims need to be treated with caution. This article argues that public library experiments with user generated content can be more usefully analysed in the context of wider institutional mandates around literacy, civic engagement and access. This article critically examines some recent library developments in this field, with a particular focus on Australian libraries.
Additional file 2 of Functional difficulty among children in Malaysia – findings from the National Health and Morbidity Survey (NHMS) 2019
Creators: name: Sahril, Norhafizah
name: Chan, Ying Ying
name: Ahmad, Noor Ani
name: Aznuddin Abd Razak, Mohamad
name: Rezali, Muhammad Solihin
name: Wahab, Nor’Ain Ab
name: Azlan Kassim, Mohd Shaiful
name: Abdul Rahim, Norsyamlina Che
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Neuroscience
Biotechnology
Science Policy
Mental Health
Computational Biology

description: Supplementary Material 2
Additional file 1 of Comparative study of neutralizing antibodies titers in response to different types of COVID-19 vaccines among a group of egyptian healthcare workers
Creators: name: Maher, Sara
name: Assaly, Nihal M. El
name: Aly, Doaa Mamdouh
name: Atta, Shimaa
name: Fteah, Asmaa Mohamed
name: Badawi, Hala
name: Zahran, Manal Youssef
name: Kamel, Manal
Publisher: name: figshare
Year: 2024
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 1.
Utilising digital solutions within trauma and orthopaedic surgery to deliver better healthcare outcomes
Creators: name: Kiely, Ruth
Publisher: name: Royal College of Surgeons in Ireland
Year: 2025
Subjects: classificationCode: 420302
subject: Digital health
classificationCode: 420311
subject: Health systems
classificationCode: 4206
subject: Public health
classificationCode: 350718
subject: Strategy
classificationCode: 320216
subject: Orthopaedics
classificationCode: 320226
subject: Surgery

description: A paper presented at the 'Better health outcomes from digital health?’ National Healthcare Outcomes Conference, RCSI University of Medicine and Health Sciences, 8 April 2025.
Supplementary document for High fidelity distribution of triggered polarization-entangled telecom photons via a 36 km intra-city fiber network - 7114269.pdf
Creators: name: Strobel, Tim
name: Kazmaier, Stefan
name: Bauer, Tobias
name: Schäfer, Marlon
name: Choudhary, Ankita
name: Joos, Raphael
name: Nawrath, Cornelius
name: Weber, Jonas
name: Nie, Weijie
name: Bhayani, Ghata
Publisher: name: Optica Publishing Group
Year: 2024
Subjects: Uncategorized

description: Supplementary Material
Identification and design of novel small molecule inhibitors against MERS-CoV papain-like protease via high-throughput screening and molecular modeling
Creators: name: Lee, Hyun
name: Ren, Jinhong
name: Pesavento, Russell
name: Ojeda, Isabel
name: Rice, Amy J
name: Lv, Haining
name: Kwon, Youngjin
name: Johnson, Michael
Publisher: name: University of Illinois at Chicago
Year: 2022
Subjects: subject: Organic Chemistry
subject: FOS: Chemical sciences

description: The development of new therapeutic agents against the coronavirus causing Middle East Respiratory Syndrome (MERS) is a continuing imperative. The initial MERS-CoV epidemic was contained entirely through public health measures, but episodic cases continue, as there are currently no therapeutic agents effective in the treatment of MERS-CoV, although multiple strategies have been proposed. In this study, we screened 30,000 compounds from three different compound libraries against one of the essential proteases, the papain-like protease (PLpro), using a fluorescence-based enzymatic assay followed by surface plasmon resonance (SPR) direct binding analysis for hit confirmation. Mode of inhibition assays and competition SPR studies revealed two compounds to be competitive inhibitors. To improve upon the inhibitory activity of the best hit compounds, a small fragment library consisting of 352 fragments was screened in the presence of each hit compound, resulting in one fragment that enhanced the IC50 value of the best hit compound by 3-fold. Molecular docking and MM/PBSA binding energy calculations were used to predict potential binding sites, providing insight for design and synthesis of next-generation compounds.
Neuromyths in Greek primary teachers and their sources
Creators: name: VOULGARI, ALEXANDRA
name: POTVIN, PATRICE
name: ADIGUZEL (Canada), OKTAY CEM
Publisher: name: Review of Science, Mathematics and ICT Education
Year: 2025
Subjects: Neuromyth, primary teacher, teacher training, sources of neuromyths, questionnaire

description: This study examines the prevalence and sources of neuromyths among primary school teachers in Greece, focusing on misconceptions related to neuroscience and their implications for educational practices. Through a questionnaire, we collected data from teachers to identify common neuromyths and explored their sources, including educational materials, professional development programs, and media representations. The findings reveal significant gaps in understanding of basic neuroscience, echoing trends observed in research conducted in other contexts and countries. This article contributes to the ongoing discourse on the impact of neuromyths in education and highlights the importance of enhancing awareness and understanding among educators.
description: Review of Science, Mathematics and ICT Education, Forthcoming papers
Study of functional metallic nano/microstructures for photonics applications
Creators: name: Hossain, Md Muntasir
Publisher: name: Swinburne
Year: 2024

description: The manipulation of light and moulding its flow at the nanoscale dimensions are some of the pioneering research fields of physics in the current century. Artificially designed miniature optical structures can serve as the key elements for controlling light in a desired manner, which is promising for the rapid development of photovoltaics and communications. Here, we demonstrate that novel metallic nano/microstructures can possess unique optical properties and can be realised via the state-of-the-art fabrication technologies. These functional metallic structures have potential applications in the swift progress of future photovoltaic devices and high speed telecommunications systems.
The Impact of COVID-19 on High School Student-Athlete Experiences with Physical Activity, Mental Health, and Social Connection
Creators: name: Shepherd, Heather A.
name: Evans, Taffin
name: Gupta, Srijal
name: McDonough, Meghan H.
name: Doyle-Baker, Patricia
name: Belton, Kathy L.
name: Karmali, Shazya
name: Pawer, Samantha
name: Hadly, Gabrielle
name: Pike, Ian, 1958-
name: Adams, Stephanie A.
name: Babul, Shelina
name: Yeates, Keith Owen
name: Kopala-Sibley, Daniel C.
name: Schneider, Kathryn J.
name: Cowle, Stephanie
name: Fuselli, Pamela
name: Emery, Carolyn A.
name: Black, Amanda M.
Publisher: name: Multidisciplinary Digital Publishing Institute
Year: 2021

description: COVID-19 restrictions led to reduced levels of physical activity, increased screen usage, and declines in mental health in youth; however, in-depth understandings of the experiences of high school student-athletes have yet to be explored. To describe the experiences of the COVID-19 pandemic on student-athletes’ physical activity, social connection, and mental health, 20 high school student-athletes living in Calgary, Alberta participated in semi-structured interviews, designed using phenomenography. Participants reported variations in physical activity, social connections, and mental health which were influenced by stay-at-home restrictions and weather. Access to resources, changes to routines, online classes, and social support all influenced engagement in physical activity. School and sports provided opportunities for in-person social connections, impacted by the onset of the pandemic. Participants reported their mental health was influenced by social connections, online classes, and physical activity. Findings from this study will inform the development of resources for high school student-athletes amidst COVID-19.
Additional file 1 of Compulsory treatment at home: an interview study exploring the experiences of an early group of patients, relatives and mental-health workers
Creators: name: de Waardt, D. A.
name: de Jong, I. C.
name: Lubben, M.
name: Haakma, I.
name: Mulder, C. L.
name: Widdershoven, G. A. M.
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Supplementary Material 1.
Additional file 1 of SMILES all around: structure to SMILES conversion for transition metal complexes
Creators: name: Rasmussen, Maria H.
name: Strandgaard, Magnus
name: Seumer, Julius
name: Hemmingsen, Laura K.
name: Frei, Angelo
name: Balcells, David
name: Jensen, Jan H.
Publisher: name: figshare
Year: 2025
Subjects: Biochemistry
Chemical Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Information Systems not elsewhere classified
Science Policy

description: Supplementary Material 1.
Updated Supplementary Simulation Data for Insights into the Importance of WPD-Loop Sequence for Activity and Structure in Protein Tyrosine Phosphatases
Creators: name: Shen, Ruidan
name: Crean, Rory M.
name: Olsen, Keith J.
name: Richan, Teisha
name: Brandão, Tiago A. S.
name: Berry, Ryan D.
name: Tolman, A.
name: Loria, J. Patrick
name: Johnson, Sean J.
name: Kamerlin, Shina Caroline Lynn
name: Hengge, Alvan C.
Publisher: name: Zenodo
Year: 2021
Subjects: Protein Tyrosine Phosphatases
PTP1B
YopH
Conformational Plasticitiy
Loop Dynamics
Molecular Dynamics
Molecular Simulation Data

description: Additional simulation data for "Insights into the Importance of WPD-Loop Sequence for Activity and Structure in Protein Tyrosine Phosphatases", with additional data compared to our original submission, DOI: 10.5281/zenodo.5500670
Additional file 1 of Two distinct clinical progressions of P67phox-deficient CGD, both commencing with cervical lymphadenitis
Creators: name: Dong, Lili
name: Zhang, Lei
name: Xu, Chunna
name: Guo, Mingfa
name: Tang, Yu
name: Shen, Yuelin
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Supplementary Material 1.
Advancing RCSI’s educational initiatives to enhance digital health competency
Creators: name: Das, Sudipto
Publisher: name: Royal College of Surgeons in Ireland
Year: 2025
Subjects: classificationCode: 420302
subject: Digital health
classificationCode: 420311
subject: Health systems
classificationCode: 4206
subject: Public health
classificationCode: 350718
subject: Strategy
classificationCode: 390110
subject: Medicine, nursing and health curriculum and pedagogy

description: A paper presented at the 'Better health outcomes from digital health?’ National Healthcare Outcomes Conference, RCSI University of Medicine and Health Sciences, 8 April 2025.
Exploring the scientific conceptual understanding of intermediate-grade learners on Earth and Space
Creators: name: FAUSTINO, SHARMAINE P.
name: CABRADILLA, JOSEPHINE O.
name: ESTOQUE, GERALDINE S.
name: FLORES, JULIE ANNE C.
name: GENESE, DIONISIA N.
name: ASUNCION (Philippines), RAPHAEL JOB R,
Publisher: name: Review of Science, Mathematics and ICT Education
Year: 2025
Subjects: Earth and Space Science, intermediate grade learners, misconception, scientific conceptual understanding

description: This research study aimed to determine the scientific conceptual understanding of Earth and Space Science among intermediate-grade learners at La Union, Philippines. A descriptive research design was utilized for 299 participants (146 males and 153 females; aged 9-12 years old) using a two-tiered multiple-choice type to measure the scientific conceptual understanding of the participants. The two-tiered test was subjected to the Rasch measurement model, which can resolve guessing problems and detect outliers who answer via guessing for reliability and validity. The data results indicated that more students “do not understand the concept” and have “misconceptions”. The study found that the conceptual understanding of the pupils had significant differences in terms of grade level through Kruskal-Wallis H Test. However, a significant difference in conceptual understanding between gender in every grade level was not found using Mann-Whitney U Test. These findings highlight the importance of focusing on building a strong conceptual understanding of science in intermediate grades (4–6) by addressing foundational gaps to master science concepts and succeed
description: Review of Science, Mathematics and ICT Education, Forthcoming papers
Quality success: do organisational learning attributes make a difference?
Creators: name: Oliver, Judith
Publisher: name: Swinburne
Year: 2024

description: The purpose of the study is to investigate the learning attributes of organisations following a continuous improvement approach to operations. The focus will be on the examination of organisations with both successful and unsuccessful quality programs to identify organisational learning attributes that discriminate the organisations at either end of the success continuum. Data was collected through a survey sent to Australian organisations certified to quality standard ISO9000. The findings suggest that organisations that have a quality program that has exceeded expectations have been able to develop and encourage the attributes necessary for a learning organisation. It would appear that learning has been an important lever for these organisations to succeed in the quality endeavours. The findings of the study provides further empirical evidence of the role organisational learning has in improving organisational outcomes especially in relation to quality practices.
Identification of Small Molecule Inhibitors against Staphylococcus aureus Dihydroorotase via HTS
Creators: name: Rice, Amy J
name: Pesavento, Russell
name: Ren, Jinhong
name: Youn, Isoo
name: Kwon, Youngjin
name: Ellepola, Kassapa
name: Che, Chun-Tao
name: Johnson, Michael
name: Lee, Hyun
Publisher: name: University of Illinois at Chicago
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Drug-resistant Staphylococcus aureus is an imminent threat to public health, increasing the importance of drug discovery utilizing unexplored bacterial pathways and enzyme targets. De novo pyrimidine biosynthesis is a specialized, highly conserved pathway implicated in both the survival and virulence of several clinically relevant pathogens. Class I dihydroorotase (DHOase) is a separate and distinct enzyme present in gram positive bacteria (i.e., S. aureus, B. anthracis) that converts carbamoyl-aspartate (Ca-asp) to dihydroorotate (DHO)-an integral step in the de novo pyrimidine biosynthesis pathway. This study sets forth a high-throughput screening (HTS) of 3000 fragment compounds by a colorimetry-based enzymatic assay as a primary screen, identifying small molecule inhibitors of S. aureus DHOase (SaDHOase), followed by hit validation with a direct binding analysis using surface plasmon resonance (SPR). Competition SPR studies of six hit compounds and eight additional analogs with the substrate Ca-asp determined the best compound to be a competitive inhibitor with a KD value of 11 µM, which is 10-fold tighter than Ca-asp. Preliminary structure-activity relationship (SAR) provides the foundation for further structure-based antimicrobial inhibitor design against S. aureus.
Additional file 1 of Scaling up production of cephalosporin C by Acremonium chrysogenum W42-I in a fermenter using submerged fermentation
Creators: name: Ibrahim, Asmaa A.
name: El-Housseiny, Ghadir S.
name: Aboshanab, Khaled M.
name: Stratmann, Ansgar
name: Yassien, Mahmoud A.
name: Hassouna, Nadia A.
Publisher: name: figshare
Year: 2024
Subjects: Space Science
Medicine
Pharmacology
Biotechnology
Biological Sciences not elsewhere classified

description: Supplementary Material 1
Additional file 1 of The mobile seniors’ clinic - an innovative transition of care for frail older adults
Creators: name: Boucher, Valérie
name: Jouhair, Eva-Marie
name: Sirois, Marie-Josée
name: Tailleur, Luc
name: Voyer, Philippe
name: Mercier, Éric
name: Giguère, Anik
name: Dionne, Clermont E.
name: Légaré, France
name: Dallaire, Clémence
name: Bergeron, Stéphane
name: Carmichael, Pierre-Hugues
name: Emond, Marcel
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Cancer
subject: Science Policy
subject: Computational Biology

description: Supplementary Material 1
Grupos Focales para el Proyecto: Métricas Responsables en Colombia
Creators: name: Chalela, Salim
name: Tejada Gómez, María Alejandra
name: Pallares, César
name: Bernal, Elizabeth
name: Acosta, Alida
name: Rendón, César
name: Ruíz, Lorena
name: Muñoz, Hernán
Publisher: name: Zenodo
Year: 2022
Subjects: Responsible Metrics
Research Evaluation
Colombia

description: Presentación utilizada para los grupos focales del proyecto "Métricas Responsables para Colombia"
title: Uneven second language competency in the English for Academic Purposes context: ‘spiky profiles’ and the role of self-efficacy beliefs
Creators: name: Smith, Karen Fiona
Publisher: name: University of Central Lancashire
Year: 2024

description: Uneven language competency has been documented in multiple educational contexts with authors alluding to the ‘spiky profiles’ of English second language [L2] learners. These accounts have thus far been anecdotal, so this mixed-method study contributes original empirical research into the competency profiles and the self-efficacy [SE] beliefs of English for Academic Purposes [EAP] students in the UK Higher Education [HE] context. It is crucial to identify and treat ‘spiky profiles’ where they occur due to the considerable language demands of tertiary study, moreover, understanding the SE beliefs that accompany students’ profiles further informs EAP teaching approaches.
In the study’s quantitative phase, 2114 sets of test scores from the skill areas of speaking, listening, reading, and writing, were collected from students with varying first languages [L1s] from six sittings of a B2 English language test between December 2016 and September 2019. An innovative approach measured these students’ degree of uneven competency, and their score sets were profiled. Correlational and standard multiple regression analyses were conducted, as were t-testing of profiles and ANOVA of three L1 groupings. In the qualitative phase, interviews elicited fifteen students’ SE beliefs vis-à-vis their competency profiles. Bandura’s (1997) model of self-efficacy underpinned the interview guide, but open coding and thematic analysis allowed new themes to emerge.
The unique contribution of this study is evidence that uneven competency is very common and patterned. Many students exhibited an uneven profile, with one third of the sample scoring highest in speaking, followed by listening, reading, and writing. Significant differences according to L1 were identified with L1 Arabic students being more unevenly competent. The qualitative findings uncovered SE’s self-regulatory and motivational impacts on L2 development. Differing beliefs across skill areas were implicated in differing reports of self-regulation, motivation, and ensuing language performance via negative, resilient, and positive feedback loops.
Both phases of the study highlighted the importance of the productive skills in students’ profiles. The disparities observed were explained by the influence of students’ L1s and educational experiences, as well as students’ conceptions and expectations of these skills areas. It is argued that closing the gap between the speaking and writing competencies of UK EAP students can be achieved through process-genre instruction that incorporates careful management of students’ SE beliefs.
Edward R. Hoehl, Bleachers Borrowed from Port Jefferson High School, 1955
Creators: name: Hoehl, Edward R.
Publisher: name: Unknown
Year: 1955
Subjects: Stony Brook
Seating furniture
Benches

description: This note is written by Edward R. Hoehl in 1955, in regards to sections of bleacher borrowed from Port Jefferson High School on July 8.
Numerical analysis of stochastic Stefan problem using gradient discretisation method
Creators: name: Khan, Muhammad Awais
Publisher: name: Monash University
Year: 2025
Subjects: classificationCode: 490510
subject: Stochastic analysis and modelling
classificationCode: 490302
subject: Numerical analysis

description: This thesis investigates the numerical approximation of stochastic Stefan problems (SSPs) with multiplicative noise, emphasizing convergence analysis, implementation, and efficient solvers. Using the Gradient Discretisation Method (GDM), convergence was rigorously proven, and a weak martingale solution established, applicable to various numerical methods. The gradient scheme was implemented with P1 finite elements and HMM methods. To address computational challenges, efficient linearised and regularised solvers were introduced, reusing pre-computed matrices to reduce Jacobian overhead in the Newton method. Sensitivity analyses and adaptive tolerances further enhanced solver efficiency and performance.
Additional file 1 of Is environmental risk assessment possible with the alternatives to acute fish toxicity test? Case study with pharmaceuticals
Creators: name: Mlnaříková, Marie
name: Pípal, Marek
name: Bláhová, Lucie
name: Bláha, Luděk
Publisher: name: figshare
Year: 2024
Subjects: subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Supplementary material 1: Figure SF1: Dose–response curves of selected substances A: CBZ, B: CIP, C: CLA, D: DCL, E: HDZ, F: IBU, G: PCM, and H: SMX; from RT Gill W1 assay. Each of the curves represents a non-linear fit for a set of data from one replicate. Log c on the x-axis is in mg/l. Table S1: Acute effects on fish reported in the literature for selected substances. For each substance, the table is divided into sections listing acute fish toxicity (endpoint of AFT), non-lethal effects after acute exposure, both tested on adult or juvenile fish; FET or comparable early life-stage test either with or without zebrafish; and finally, in vitro section listing results for cell lines and primary cultures. Table S2: MS/MS parameters and MLOD, MLOQ of pharmaceuticals. Table S3: Measured concentrations of tested substances at the beginning and the end of FET and RT Gill W1 Assay. The concentrations are stated in mg/l, while the difference between the expected and measured concentration is expressed as a percentage of the expected value. Samples were collected directly from the wells or glass vessels immediately after exposing the cells or embryos, respectively, and a second set of samples was collected 24 h later before the cytotoxicity evaluation, or 120 h at the final evaluation of FET, respectively. Samples were analyzed by UPLC-MS. C1, C2 and C3 represent three concentration levels chosen for the evaluation of the stability of the substances that cover the whole exposure range tested. C1 is an exposure concentration between EC10 and EC20. C2 represents the exposure concentration closest to EC50, C3 represents the highest tested concentration. N/A – Not Analysed – CIP, CLA, HDZ, and PCM were tested in FET only at one limit concentration, represented by C3 concentration. Table S4: Results of Fish Embryo Toxicity (FET) test, including LC50 for mortality and lethal endpoints, EC50 for sublethal malformations, and EC50 for all effects including heart rate, length, and spontaneous movement. Each of the ECs is expressed in mg/l including a 95% confidence interval (a the confidence interval could not be calculated due to an incomplete dose–response curve; b FET results are also in Table 1 of the main text body, here presented for comparison). Table S5: Results of RT Gill W1 assay and published in vitro effective concentrations collected on cell lines. EC50 values and confidence intervals are shown for the results of this study. * the most sensitive of the endpoints tested, ** the most sensitive endpoint based on the EC10 value.
Comparative genomics for evolutionary cell biology using AMOEBAE: Understanding the Golgi and beyond
Creators: Barlow, Lael D.
Maciejowski, William
More, Kiran
Terry, Kara
Vargová, Romana
Záhonová, Kristína
Dacks, Joel B.
Publisher: name: University of Alberta Library
Year: 2022

Taking an evolutionary approach to cell biology can yield important new information about how the cell works and how it evolved to do so. This is true of the Golgi apparatus, as it is of all systems within the cell. Comparative genomics is one of the crucial first steps to this line of research, but comes with technical challenges that must be overcome for rigor and robustness. We here introduce AMOEBAE, a workflow for mid-range scale comparative genomic analyses. It allows for customization of parameters, queries, and taxonomic sampling of genomic and transcriptomics data. This protocol article covers the rationale for an evolutionary approach to cell biological study (i.e. when would AMOEBAE be useful), how to use AMOEBAE, and discussion of limitations. It also provides an example dataset, which demonstrates that the Golgi protein AP4 Epsilon is present as the sole retained subunit of the AP4 complex in basidiomycete fungi. AMOEBAE can facilitate comparative genomic studies by balancing reproducibility and speed with user-input and interpretation. It is hoped that AMOEBAE or similar tools will encourage cell biologists to incorporate an evolutionary context into their research.
Artifact for Paper "Even Faster Conflicts and Lazier Reductions for String Solvers"
Creators: name: Nötzli, Andres
name: Reynolds, Andrew
name: Haniel Barbosa
name: Barrett, Clark
name: Tinelli, Cesare
Publisher: name: Zenodo
Year: 2022

description: This artifact contains a VM with the artifact for the paper. Username/password: cav22/cav22
The Relationship between Sun Exposure, Dietary Vitamin D and Muscle Soreness in Collegiate Football Players
Creators: name: Goodman, Emily
Publisher: name: Georgia State University
Year: 2016

description: Background: A growing body of research is raising concern regarding the prevalence of poor vitamin D status among athletes. Besides it?s well known association with low bone mineral density, an addition sign of vitamin D deficiency is muscular weakness and soreness, suggesting that deficiency in athletic populations may inhibit optimal physical performance and increase the risk of injury. It is difficult to achieve optimal vitamin D status through diet alone, so it is important to assess all sources of vitamin D, including dietary intake, supplementation, and amount and frequency of sun exposure to obtain a comprehensive profile of vitamin D risk. Currently, there are no studies that include such a complete profile of vitamin D risk in collegiate football players.
 Purpose: The purpose of this study is to investigate the associations between sun exposure and diet, as markers of vitamin D status, and training-induced muscle soreness in collegiate football players. More specifically, this study assesses if total sun exposure and dietary vitamin D intake are related to muscle soreness.
 Methods: Twenty-four male collegiate football players were recruited for this cross-sectional study in October 2015. Player body composition was measured using a multi-current bioelectrical impedance analyzer (BIA). Dietary intake, sun exposure, and muscle soreness data were collected via interview. The Sun Exposure Questionnaire and the Short Form McGill Pain Questionnaire (SF-MPQ) were used to assess weekly sun exposure and muscle soreness, respectively.
Results: The mean vitamin D intake (10.8ñ9.5 mcg) was below the RDA for vitamin D (15 mcg), with only 7 participants (29.2%) meeting or exceeding the RDA. Dietary vitamin D intake was inversely associated with portion of muscle sore (rs = -0.393, p = 0.029). SF-MPQ total and affective scores were each inversely associated with weekly time outdoors (rs = -0.362, p = 0.041; rs = -0.449, p = 0.014, respectively). T-test analysis found that the mean SF-MPQ affective pain score was significantly lower for players with a time outdoors score above the mean (p = 0.04).
Conclusion: There is a high prevalence of insufficient dietary vitamin D intake (70.8%) identified in a collegiate football team. Our findings suggest that higher dietary vitamin D intake and more time spent outdoors are associated with a lower proportion of muscular soreness and decreased perceived pain. Thus, achieving a satisfactory vitamin D status, through a combination of diet and sun exposure, may reduce vitamin D deficiency associated risks, including lowering muscle soreness, thereby serving to enhance athletic performance.
Length of Exclusive Breastfeeding and Obesity Risk in Children at Risk for Type 1 Diabetes
Creators: name: Whitfield, Krista
Publisher: name: Georgia State University
Year: 2017

description: Type 1 diabetes (T1D) is an autoimmune disease that occurs when T lymphocyte cells attack and destroy beta cells in the pancreas.1 The cause of T1D is considered to be a combination of genetic predisposition and environmental or lifestyle risk factors.
Early introduction of diet is thought to play a role in the development of T1D as it is less common in people who were breastfed and who were introduced to solid foods at later ages. The protection that breastfeeding can offer against the development of childhood obesity and T1D in children at risk for T1D is unknown and may be related to many different factors. The purpose of this project is to review the literature on the association between infant diet, including breastfeeding and complementary foods, and the development of obesity and T1D. This information will be used to prepare a secondary analysis proposal to examine the association between length of exclusive breastfeeding and obesity risk in children at risk for T1D for submission to the Presentations and Publications Committee of the Trial to Reduce IDDM in the Genetically at Risk (TRIGR) study.
Additional file 1 of Synergistic effect of umbilical cord extracellular vesicles and rhBMP-2 to enhance the regeneration of a metaphyseal femoral defect in osteoporotic rats
Creators: name: Deluca, Amelie
name: Wagner, Andrea
name: Heimel, Patrick
name: Deininger, Christian
name: Wichlas, Florian
name: Redl, Heinz
name: Rohde, Eva
name: Tempfer, Herbert
name: Gimona, Mario
name: Traweger, Andreas
Publisher: name: figshare
Year: 2024
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology

description: Supplementary Material 1
Validity of estimating flood and drought characteristics under equilibrium climates from transient simulations
Creators: name: Boulange, Julien
name: Hanasaki, Naota
name: SATOH, Yusuke
name: Yokohata, Tokuta
name: SHIOGAMA, HIDEO
name: Burek, Peter
name: Thiery, Wim
name: Gerten, Dieter
name: Müller Schmied, Hannes
name: Wada, Yoshihide
name: Gosling, Simon
name: Pokhrel, Yadu
name: Wanders, Niko
Publisher: name: Humboldt-Universität zu Berlin
Year: 2021
Subjects: subject: floods
subject: droughts
subject: climate change
subject: transient climate
subject: equilibrium climate
subject: 551 Geologie, Hydrologie, Meteorologie

description: Future flood and drought risks have been predicted to transition from moderate to high levels at global warmings of 1.5 °C and 2.0 °C above pre-industrial levels, respectively. However, these results were obtained by approximating the equilibrium climate using transient simulations with steadily warming. This approach was recently criticised due to the warmer global land temperature and higher mean precipitation intensities of the transient climate in comparison with the equilibrium climate. Therefore, it is unclear whether floods and droughts projected under a transient climate can be systematically substituted for those occurring in an equilibrated climate. Here, by employing a large ensemble of global hydrological models (HMs) forced by global climate models, we assess the validity of estimating flood and drought characteristics under equilibrium climates from transient simulations. Differences in flood characteristics under transient and equilibrium climates could be largely ascribed to natural variability, indicating that the floods derived from a transient climate reasonably approximate the floods expected in an equally warm, equilibrated climate. By contrast, significant differences in drought intensity between transient and equilibrium climates were detected over a larger global land area than expected from natural variability. Despite the large differences among HMs in representing the low streamflow regime, we found that the drought intensities occurring under a transient climate may not validly represent the intensities in an equally warm equilibrated climate for approximately 6.7% of the global land area.
IKKI VEKTOR ORASIDAGI BURCHAK KOSINUSI
Creators: name: Sobirova, Dinora
Publisher: name: Zenodo
Year: 2025

description: Ushbu maqolada ikki vektor orasidagi burchakning kosinusi tushunchasi va uning matematik formulasi keltirilgan. Vektorlar orasidagi burchakni hisoblashda kosinus funksiyasining qanday ishlashi, shuningdek, uning geometrik va algebraik talqinlari muhokama qilinadi. Ushbu mavzu fizika, geometriya va kompyuter grafikasi kabi sohalarda keng qo'llaniladi. Maqolada bu tushunchalar amaliy misollar orqali tushuntirilgan.
HBM4EU - Phthalates
Creators: name: (:Unkn) Unknown
Publisher: name: My University
Year: 2021

description: We are exposed to a complex mixture of chemicals in our daily lives through the environment, consumer products, food and drinking water and at work. The 'Phthalates' video is part of a series of interviews with experts on different chemical substances that are studied under the HBM4EU project to help citizens to understand better how chemicals impact in our life. Which are the main routes of exposure and health impacts of phthalates? What do we know about the current human exposure? What new knowledge are we producing at HBM4U? Watch the video and find all the answers. Additionally, you can learn how to avoid exposure to phthalates and what are the main policy action done at the European level to prevent human exposure. Special acknowledgment should be given to Dr Marike Kolossa-Gehring, Head of section Toxicology, Health Related Environmental Monitoring at the German Environment Agency. The European Human Biomonitoring Initiative (HBM4EU) is a joint effort of 30 countries, the European Environment Agency and the European Commission, co-funded under Horizon 2020. The initiative is coordinating and advancing human biomonitoring in Europe. HBM4EU is generating evidence of the actual exposure of citizens to chemicals and the possible health effects in order to support policy making. More information at www.hbm4eu.eu/ This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 733032. © European Environment Agency
Additional file 1 of Dietary supplementation with N-acetyl-L-cysteine ameliorates hyperactivated ERK signaling in the endometrium that is linked to poor pregnancy outcomes following ovarian stimulation in pigs
Creators: name: Cheng, Linghua
name: Shi, Zhicheng
name: Yue, Yuan
name: Wang, Yue
name: Qin, Yusheng
name: Zhao, Wei
name: Hu, Yupei
name: Li, Qin
name: Guo, Min
name: An, Lei
name: Wang, Shumin
name: Tian, Jianhui
Publisher: name: figshare
Year: 2024
Subjects: subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: Mental Health

description: Additional file 1: Fig. S1 Immunohistochemical image of IgG control. Fig. S2 Western blotting image of IgG control. Fig. S3 Impaired uterine environment contributes substantially to the decreased implantation rate after ovarian stimulation. Fig. S4 NAC increases embryo implantation rate by improving the endometrial receptivity.
Dynamic behaviour of lightweight automotive materials
Creators: name: Xu, Shanqing
Publisher: name: Swinburne
Year: 2024

description: The PhD research studied the dynamic behaviour of three types of lightweight automotive materials including aluminium foams, aluminium honeycombs and twinning induced plasticity steels. The strain rate sensitivity, strength enhancement and energy absorption of these materials under dynamic loadings were extensively studied. Analytical models were proposed based on the physical phenomenon observed in experiments. The research presented valuable experimental data and theoretical models for the optimized design of new lightweight vehicle structures. New structures made by these materials have excellent energy absorption capacity in a car crash and, therefore, protect passengers.
DEP Bulletin - 2022 - Volume 46 Issue 23
Creators: name: No Name Supplied
Publisher: name: No Publisher Supplied
Year: 2022

description: The DEP bulletin is a semi-monthly publication of the New Jersey Department of Environmental Protection. It contains a list of construction permit applications recently filed or acted upon by the Department along with a calendar of events of interest, a schedule of public hearings, and Environmental Impact Statements acted upon during the period.
Litostilbus Guillebeau 1894
Creators: name: Gimmel, Matthew L.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Phalacridae
Litostilbus

description: Litostilbus Guillebeau, 1894
 Litostilbus Guillebeau 1894: 283. Type species: Sphaeridium testaceum Fabricius, 1792, by original designation.
 Pseudolitochrus Liubarsky 1993: 16. Type species: Phalacrus festivus Motschulsky, 1858, by original designation. Synonymy by Gimmel (2013: 46).
 Diagnosis. Adults of the genus Litostilbus are readily recognized among all other Phalacridae by the combination of a large scutellar shield (width at base greater than greatest diameter of eye in dorsal view), presence of a long ctenidium on the outer edge of the protibia (Fig. 4, arrow), and metatarsomere 1 longer than metatarsomere 2. Additionally, the dorsal surface has sparse, very short, recumbent microsetae, the elytra have irregular transverse strigae and a distinct diffraction grating, and each elytron has one to three engraved striae (i.e., striae that reflect light in a thin line at a steep angle, as opposed to a shallow groove), including the sutural stria.
 Remarks. Gimmel (2013: 47) reported the existence of “at least one undescribed species from Central and South America”; however, this comment was based on observation of the extensive variation in coloration and elytral striation described below for L. testaceus and with further study has proved incorrect.
description: Published as part of Gimmel, Matthew L., 2023, Distribution and Synonymy in New World Litostilbus Guillebeau (Coleoptera: Cucujoidea: Phalacridae), pp. 189-193 in The Coleopterists Bulletin 77 (2) on pages 189-190, DOI: 10.1649/0010-065X-77.2.189, http://zenodo.org/record/13242921
Additional file 1 of Nationwide trends in the use of ADHD medications in the period 2006–2022: a study from the Norwegian prescription database
Creators: name: Hartz, Ingeborg
name: Madsstuen, Nils Henry Haugen
name: Andersen, Per Normann
name: Handal, Marte
name: Odsbu, Ingvild
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Neuroscience
subject: Pharmacology
subject: Biotechnology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Science Policy
subject: Mental Health
subject: Computational Biology

description: Supplementary Material 1
Comparing the use of aggregate data and various methods of integrating individual patient data to network meta-analysis and its application to first-line ART
Creators: name: Kanters, Steve
name: Karim, Mohammad Ehsanul
name: Thorlund, Kristian
name: Anis, Aslam H. (Aslam Hayat), 1959-
name: Zoratti, Michael
name: Bansback, Nick
Publisher: name: BioMed Central
Year: 2021

description: Background: The 2018 World Health Organization HIV guidelines were based on the results of a network meta-analysis (NMA) of published trials. This study employed individual patient-level data (IPD) and aggregate data (AgD) and meta-regression methods to assess the evidence supporting the WHO recommendations and whether they needed any refinements. Methods: Access to IPD from three trials was granted through ClinicalStudyDataRequest.com (CSDR). Seven modelling approaches were applied and compared: 1) Unadjusted AgD network meta-analysis (NMA) – the original analysis; 2) AgD-NMA with meta-regression; 3) Two-stage IPD-AgD NMA; 4) Unadjusted one-stage IPD-AgD NMA; 5) One-stage IPD-AgD NMA with meta-regression (one-stage approach); 6) Two-stage IPD-AgD NMA with empirical-priors (empirical-priors approach); 7) Hierarchical meta-regression IPD-AgD NMA (HMR approach). The first two were the models used previously. Models were compared with respect to effect estimates, changes in the effect estimates, coefficient estimates, DIC and model fit, rankings and between-study heterogeneity. Results: IPD were available for 2160 patients, representing 6.5% of the evidence base and 3 of 24 edges. The aspect of the model affected by the choice of modeling appeared to differ across outcomes. HMR consistently generated larger intervals, often with credible intervals (CrI) containing the null value. Discontinuations due to adverse events and viral suppression at 96 weeks were the only two outcomes for which the unadjusted AgD NMA would not be selected. For the first, the selected model shifted the principal comparison of interest from an odds ratio of 0.28 (95% CrI: 10.17, 0.44) to 0.37 (95% CrI: 0.23, 0.58). Throughout all outcomes, the regression estimates differed substantially between AgD and IPD methods, with the latter being more often larger in magnitude and statistically significant. Conclusions: Overall, the use of IPD often impacted the coefficient estimates, but not sufficiently as to necessitate altering the final recommendations of the 2018 WHO Guidelines. Future work should examine the features of a network where adjustments will have an impact, such as how much IPD is required in a given size of network.
Additional file 1 of Utilizing Large language models to select literature for meta-analysis shows workload reduction while maintaining a similar recall level as manual curation
Creators: name: Cai, Xiangming
name: Geng, Yuanming
name: Du, Yiming
name: Westerman, Bart
name: Wang, Duolao
name: Ma, Chiyuan
name: Vallejo, Juan J. Garcia
Publisher: name: figshare
Year: 2025
Subjects: subject: Medicine
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Supplementary Material 1.
Additional file 1 of Vaccine equity implementation: exploring factors influencing COVID-19 vaccine delivery in the Philippines from an equity lens
Creators: name: Zhao, Junqiang
name: Wu, Shishi
name: Rafal, Renz Andrew
name: Manguerra, Helena
name: Dong, Quanfang
name: Huang, Hongyu
name: Lau, Lincoln
name: Wei, Xiaolin
Publisher: name: figshare
Year: 2024
Subjects: subject: Space Science
subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Supplementary Material 1
Abrikosov and the path to understanding high-Tc superconductivity
Creators: name: Campuzano, Juan-Carlos
Publisher: name: University of Illinois at Chicago
Year: 2022
Subjects: subject: Condensed Matter Physics
subject: FOS: Physical sciences

description: An early attempt to try to understand the high superconducting transition temperatures in the cuprate super-conductors was Abrikosov's theory of extended Van Hove singularities. It was based on our early experimental data on the YBa2Cu3O6.9 and YBa2Cu4O8 compounds which showed an extended saddle point singularity in the dispersion of the electronic excitations. This appeared to lead to a Van Hove singularity in the density of states with a divergence stronger than the known logarithmic one observed in conventional materials. The consequent high density of states of the extended singularity was thought to lead to high Tc's in a conventional BCS mechanism. Unfortunately, it was soon realized that the very incoherent nature of the electronic excitations in these materials did not provide the expected high density of states. Here we summarize the many unusual characteristics of the electronic excitations in the cuprates, and what they imply for a possible theoretical description of high-temperature superconductivity.
Gustav Hornberger to Edward R. Hoehl, June 29, 1955
Creators: name: Hornberger, Gustav
Publisher: name: Unknown
Year: 1955
Subjects: Stony Brook
Correspondence

description: This letter is written by Gustav Hornberger to Edward R. Hoelh Gustav Hornberger on June 29, 1955, in regards to projects and suggestions for Dogwood Hollow.
Individual project on theme "Lavandula L." (MOOC: CompTech in biology)
Creators: name: Shcherbinko Valeriya
Publisher: name: Zenodo
Year: 2022

description: Данный кейс является результатом реализации индивидуального проекта Щербинко Валерии по теме "Lavandula L. " в рамках онлайн курса "Компьютерные технологии в биологии" (автор – А.В. Ваганов) (https://stepik.org/course/60859/promo)