cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 5: Table S3. of Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant
Creators: name: Bahieldin, Ahmed
name: Atef, Ahmed
name: Edris, Sherif
name: Gadalla, Nour
name: Ali, Hani
name: Hassan, Sabah
name: Magdy Al-Kordy
name: Ramadan, Ahmed
name: Makki, Rania
name: Abdulrahman Al-Hajar
name: Fotouh El-Domyati
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Plant Biology

description: Tobacco TFs IDs (T1-T31) and primer names and sequences along with the expected amplicon sizes (bp) to be utilized in constructing pTRV2 vectors (blue boxes) for VIGS, in conducting semi-quantitative RT-PCR (orange boxes) or in both (green boxes). Information for amplifying selected tobacco TFs (T14, T15 and T24) via qRT-PCR (purple boxes) and information for amplifying selected tobacco PCD-related genes (G13, G15 and G18) and Arabidopsis TFs ARF109 (AtT14) and TFIID5 (AtTF24), either knocked out or over-expressed, via sqRT-PCR are shown. Gene codes refer to those indicated in Additional file 3: Table S2. (DOCX 28 kb)
Eburodacrys crassimana Gounelle 1909
Creators: name: Monné, Miguel A.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Eburodacrys
Eburodacrys crassimana

description: 23. Eburodacrys crassimana Gounelle, 1909
Eburodacrys crassimana Gounelle, 1909: 621.
Syntypes localities. Brazil, Goiás: Jataí. Minas Gerais: Serra do Caraça. Diamantina. Distribution. Surinam, Brazil (Pará, Maranhão, Rio Grande do Norte, Mato Grosso, Goiás, Mato Grosso do Sul, Piauí, Bahia, Minas Gerais, Espírito Santo, São Paulo, Paraná, Santa Catarina), Colombia, Bolivia (Santa Cruz), Paraguay, Argentina (Catamarca, Santiago del Estero, Mendoza, Córdoba, Santa Fé, Misiones, Chaco). Described from Serra do Caraça (Gounelle, 1909: 621).
description: Published as part of Monné, Miguel A., 2017, New species and new records of Cerambycidae (Insecta, Coleoptera) from RPPN Sanctuary of Caraça, Minas Gerais, Brazil, pp. 201-262 in Zootaxa 4319 (2) on page 209, DOI: 10.11646/zootaxa.4319.2.1, http://zenodo.org/record/889107
Additional file 14: Figure E4. of Meta-analysis derived atopic dermatitis (MADAD) transcriptome defines a robust AD signature highlighting the involvement of atherosclerosis and lipid metabolism pathways
Creators: name: Ewald, David
name: Malajian, Dana
name: Krueger, James
name: Workman, Christopher
name: Tianjiao Wang
name: Suyan Tian
name: Litman, Thomas
name: Guttman-Yassky, Emma
name: Suárez-Fariñas, Mayte
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: logFCHs correlations of MADAD and treatments A) Dupilumab (300mg), B) Cyclosporin (W12), and C) UVB. (PDF 42 kb)
Two Decades of Bank Recapitalization and Economic Stabilization Measures in Nigeria: Lessons for President Bola Tinubu's Administration.
Creators: name: Sheidu, Comfort
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 380107
subject: Financial economics

description: Two Decades of Bank Recapitalization and Economic Stabilisation Measures in Nigeria: Lessons for President Bola Tinubu's Administration.
Additional file 2: Figure S1. of Nur77-deficiency in bone marrow-derived macrophages modulates inflammatory responses, extracellular matrix homeostasis, phagocytosis and tolerance
Creators: name: Hamers, Anouk
name: Argmann, Carmen
name: Moerland, Perry
name: Koenis, Duco
name: Marinković, Goran
name: Sokolović, Milka
name: Vos, Alex De
name: Vries, Carlie De
name: Tiel, Claudia Van
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Verification of the microarray results by qRT-PCR. mRNA expression of top differentially expressed genes, as determined by microarray analysis, cFos, S100A9, NPY and Serping1 in WT and Nur77-KO BMM was determined by qRT-PCR before (left panel) and after (right panel) treatment with 100 ng/ml LPS. Data are expressed as mean ± S.D. *p
Eburodacrys flexuosa Gounelle 1909
Creators: name: Monné, Miguel A.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Eburodacrys
Eburodacrys flexuosa

description: 25. Eburodacrys flexuosa Gounelle, 1909
Eburodacrys flexuosa Gounelle, 1909: 627.
Syntypes localities. Brazil, Goiás: Jataí. Minas Gerais: Serra do Caraça. Diamantina. Distribution. Brazil (Mato Grosso, Mato Grosso do Sul, Goiás, Paraíba, Bahia, Minas Gerais, Espírito Santo, Rio de Janeiro, São Paulo), Bolivia (Santa Cruz), Paraguay, Argentina (Salta, Chaco, Misiones, Córdoba). Described from Serra do Caraça (Gounelle, 1909: 627).
description: Published as part of Monné, Miguel A., 2017, New species and new records of Cerambycidae (Insecta, Coleoptera) from RPPN Sanctuary of Caraça, Minas Gerais, Brazil, pp. 201-262 in Zootaxa 4319 (2) on page 209, DOI: 10.11646/zootaxa.4319.2.1, http://zenodo.org/record/889107
Molytophilus Hartmann 1904
Creators: name: Grebennikov, Vasily V.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Curculionidae
Molytophilus

description: Molytophilus Hartmann, 1904
Hartmann, 1904: 388 (species included: carinatus). Type species: Molytophilus carinatus Hartmann, 1904 fixed by monotypy.
Remarks. The herein re-defined genus Molytophilus is monotypic and its only species M. carinatus is known from two east African localities separated by about one thousand kilometres: the type locality in the Usambara mountains in northeastern Tanzania and the Genale region in vicinity of Mogadishu in south-eastern Somalia. Its current taxonomic assignment to Molytini: Plinthina (Alonso-Zarazaga & Lyal 1999) or Plinthini (Lyal 2014) suggests a close relationship with at least some of the approximately 20 genera traditionally attributed to this group (Grebennikov 2014). This hypothesis was first implicitly suggested by Hartmann (1904: 389), who noted an external resemblance of M. carinatus and “ Plinthus caliginosus ” (= Mitoplinthus caliginosus (F.), figs 15A–B in Grebennikov 2014). The subtribe Plinthina (sensu Grebennikov 2014), like the great majority of other weevil tribes and subtribes, has never been subjected to a phylogenetic analysis and, therefore, its monophyly and the relationships of its members to Molytophilus have never been tested. Biological preferences of the genus and its immature stages are unknown.
description: Published as part of Grebennikov, Vasily V., 2018, Both non-type species of Molytophilus (Coleoptera: Curculionidae: Molytinae) are transferred to Oreoscotus, pp. 393-396 in Zootaxa 4418 (4) on page 393, DOI: 10.11646/zootaxa.4418.4.6, http://zenodo.org/record/1244950
MOESM1 of A systematic review of the efficacy of a single dose artemisininâ  naphthoquine in treating uncomplicated malaria
Creators: name: Naing, Cho
name: Whittaker, Maxine
name: Mak, Joon
name: Kyan Aung
Publisher: name: Figshare
Year: 2015
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 1. Summary of the excluded studies.
Molytophilus carinatus Hartmann 1904
Creators: name: Grebennikov, Vasily V.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Curculionidae
Molytophilus
Molytophilus carinatus

description: Molytophilus carinatus Hartmann, 1904 (Figs. 1A–G)
Molytophilus carinatus Hartmann, 1904: 388 –389 (description)
Type locality: Ostafrika, Usambara.
Type specimens: Primary: Lectotype (Figs. 1A–E), male (MTD), herein designated to maintain taxonomic stability: “Usambara Speyer [handwritten, =h] \ [male sign] [h] \ Typus [h] [red label] \ Molytophilus carinatus Hrtm. [h] \ Samml. K.F. Hartmann Ankauf 1941.1 [printed, =p] [blue label] \ Staatl. Museum für Tierkunde. Dresden [p] \ LECTOTYPE Molytophilus carinatus Hartmann, 1904 V.Grebennikov des., 2013 [p] [red label]”. Secondary: 2 Paralectotypes (Fig. 1F) (MTD), each with male and female handwritten sign, respectively, same labels as lectotype, except the locality label “Usambara” is written in another hand and without “Speyer”, and with labels “ PARALECTOTYPE Molytophilus carinatus Hartmann, 1904 V.Grebennikov des., 2013” [p; yellow label]; handwritten identification label is absent. Described from unknown number of syntypes, but since “Hartmann” appears on labels of these specimens I consider them part of the type series. Non-type specimens: (Fig. 1G) 2 (MNHN): “ SOMALIA Genale, F.Bili 5-935 [p] \ Molytophilus carinatus Hartm. [h] MUSEUM PARIS 1968 Coll. A.HOFFMANN [p]”.
Remarks. For diagnostic purposes this species is easily recognized among likely all Molytinae by its characteristic habitus, along with the following three characters: 1, all tibiae with large spines on inner apical part (arrows, Fig. 1F); 2, lateral side of rostrum with deep groove adjacent to anterior edge of eye (arrow, Fig. 1B); and 3, robust antennae with narrow club (Fig. 1B). It remains uncertain in which of the two currently recognized Usambara regions, Western versus Eastern Usambara (Grebennikov 2017), the type series has been collected. Phylogenetic affinities of this species and, consequently, of the herein re-defined genus Molytophilus are entirely unknown. It appears probable that, unlike many East African Molytinae, this species does not inhabit the forest leaf litter since not a single specimen has been re-sampled in Western or Eastern Usambara during my recent litter sifting campaign (Grebennikov 2017).
description: Published as part of Grebennikov, Vasily V., 2018, Both non-type species of Molytophilus (Coleoptera: Curculionidae: Molytinae) are transferred to Oreoscotus, pp. 393-396 in Zootaxa 4418 (4) on pages 393-394, DOI: 10.11646/zootaxa.4418.4.6, http://zenodo.org/record/1244950
Eburodacrys lenkoi Napp & Martins 1980
Creators: name: Monné, Miguel A.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Eburodacrys
Eburodacrys lenkoi

description: 26. Eburodacrys lenkoi Napp & Martins, 1980
Eburodacrys lenkoi Napp & Martins, 1980: 81.
Distribution. Brazil (Bahia, Minas Gerais, Espírito Santo, Rio de Janeiro, São Paulo, Paraná). Reported from Serra do Caraça (Vulcano et al., 1980: 106).
description: Published as part of Monné, Miguel A., 2017, New species and new records of Cerambycidae (Insecta, Coleoptera) from RPPN Sanctuary of Caraça, Minas Gerais, Brazil, pp. 201-262 in Zootaxa 4319 (2) on page 209, DOI: 10.11646/zootaxa.4319.2.1, http://zenodo.org/record/889107
Additional file 1: Tables S1-S6. of Nur77-deficiency in bone marrow-derived macrophages modulates inflammatory responses, extracellular matrix homeostasis, phagocytosis and tolerance
Creators: name: Hamers, Anouk
name: Argmann, Carmen
name: Moerland, Perry
name: Koenis, Duco
name: Marinković, Goran
name: Sokolović, Milka
name: Vos, Alex De
name: Vries, Carlie De
name: Tiel, Claudia Van
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Computational Biology

description: Table S1. Top 25 up- and downregulated genes in Nur77-KO vs WT BMM. Table S2. Top 25 canonical pathways associated with differentially expressed genes in Nur77-KO vs WT BMM. Table S3. Top 20 gene sets identified with GSEA that are upregulated in Nur77-KO vs WT BMM. Table S4. Upstream Regulators in Nur77-KO vs WT BMM. Table S5. Top 25 up- and downregulated genes in LPS-stimulated Nur77-KO vs WT BMM. Table S6. Top 25 canonical pathways associated with differentially expressed genes in LPS-stimulated Nur77-KO vs WT BMM. (PDF 140 kb)
Additional file 6: Figure E2. of Meta-analysis derived atopic dermatitis (MADAD) transcriptome defines a robust AD signature highlighting the involvement of atherosclerosis and lipid metabolism pathways
Creators: name: Ewald, David
name: Malajian, Dana
name: Krueger, James
name: Workman, Christopher
name: Tianjiao Wang
name: Suyan Tian
name: Litman, Thomas
name: Guttman-Yassky, Emma
name: SuĂĄrez-FariĂąas, Mayte
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: QQ plot. Comparison of parameters. (PDF 1005Â kb)
Oreoscotus Aurivillius 1910
Creators: name: Grebennikov, Vasily V.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Curculionidae
Oreoscotus

description: Oreoscotus Aurivillius, 1910
Oreoscotus Aurivillius, 1910: 421 (species included: serratus, minor, laevis). Type species: not yet designated.
Remarks. Judging by the results of the morphological comparison of the type specimens, both of Hustache’s taxa are not congeneric with M. carinatus and have to, therefore, be transferred to another genus. Choosing such a genus requires a phylogenetic hypothesis of African Molytinae, and such a hypothesis is currently absent. To the best of available knowledge, both Hustache’s species likely belong to a possible clade distinguished by the adult prosternal canal delimited laterally by carinae and uniting Afrotropical species currently assigned to the genera Niphades Pascoe, 1871, Oreoscotus Aurivillius, 1910 and Niphadonothus Voss, 1965. This agrees with an earlier thought captured on one of the labels of the O. puncticollis holotype, where the specimen is related to Niphades (written perhaps by Guy A.K. Marshall, Figs 2C, D). These three genera, however, have themselves never been assessed from a phylogenetic viewpoint and their taxonomic validity is based on the pre-Henniginan typological concept. Alonso-Zarazaga & Lyal (1999) placed Oreoscotus as Molytinae incertae sedis, while Alonso-Zarazaga & Lyal (2002) transferred it to Aminyopini. Lyal (2014) included Niphades and other Aminyopini in the tribe Euderini; in this paper characters for the redefined Euderini were provided but not, however, cladistically analysed. Moreover, preliminary data suggest that the genus Niphades is widely distributed in the Afrotropical, Palaearctic and Oriental regions, has its type species in Sarawak and is not monophyletic. Considering all this uncertainty and pending further studies, both of Hustache’s nominal species originally described as Molytophilus (affinis and puncticollis), are herein transferred to the so far exclusively Tanzanian genus Oreoscotus to become O. affinis (Hustache, 1936) comb. n. and O. puncticollis (Hustache, 1936) comb. n.
description: Published as part of Grebennikov, Vasily V., 2018, Both non-type species of Molytophilus (Coleoptera: Curculionidae: Molytinae) are transferred to Oreoscotus, pp. 393-396 in Zootaxa 4418 (4) on page 395, DOI: 10.11646/zootaxa.4418.4.6, http://zenodo.org/record/1244950
Timber supply and economic impact of mountain pine beetle salvage strategies
Creators: name: Moreira-Munoz, Simon
Publisher: name: University of British Columbia
Year: 2008

description: To address the scale mountain pine beetle (MPB) outbreak in British Columbia, salvage has become fully integrated with timber supply strategies. The objective of this thesis is to assess the economic impact of different salvage strategies depending on different attack levels, decay rates, and stakeholder discount rates. The study area is located in N.E. British Columbia where the MPB has not yet reached its peak and where susceptible to attack stands account for 40% of the area. Salvage strategies were modelled with a timber supply model (Woodstock) which uses a linear programming type II optimization approach. Performance of the model was assessed over a range of indicators such as NPV, profit, salvage proportion, species composition, inventory levels, and non-recoverable volume. Sensitivity analyses were conducted on harvest flow, discount rate, and ending inventory. The model was very sensitive to the intensity of attack and less sensitive to the decay level. The high level of attack resulted in large volume losses, mostly as un-salvaged inventory. Although allowable annual cut (AAC) uplifts have an economic benefit, they do not necessarily maximize the salvage of pine. Non-pine species are an important component of the salvage and these species are also essential for the future timber supply. If the objective is to ensure quality and quantity of the future forest, policies have to complement AAC uplifts by strongly encouraging the salvage of mainly pine-leading stands and management options that minimize the “by-catch” of non-pine species and minimize destruction of advanced regeneration during salvage. However, this has an opportunity cost for the private industry where the objective is to maximize profit. If the salvage strategy focuses on decreasing the impact on cash flows, achieving desirable ending inventory levels, avoiding salvage of stands after shelf-life, and reducing impact on non-attack species, then the current harvest level will likely lead to a mid-term timber supply fall-down. Using the fibre for bioenergy production is an alternative if managing for bioenergy can be integrated into harvest operations. However, unlike mill residues, the bioenergy supply has to fully account for harvest and transportation costs of dead wood to the mill.
Oreoscotus affinis Grebennikov 2018, comb. n.
Creators: name: Grebennikov, Vasily V.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Curculionidae
Oreoscotus
Oreoscotus affinis

description: Oreoscotus affinis (Hustache, 1936) comb. n. (Figs. 2A, B)
Molytophilus affinis Hustache, 1936: 492 (description)
Type locality: Abyssinie: entre Djem-Djem et Wouramboulchi, vers 9000 pieds.
Type specimens: Primary: Holotype (by monotypy, Figs. 2A, B), unsexed (NHMUK): “ Type [p] \ TYPE [h] \ Abyssinia: Between Djem-Djem and Wouramboulchi. 8,000–9,000ft. 30.ix–1.x.1926. J.Omer Cooper. [p] \ Specimen figured [h] \ Molytophilus affinis [h] Hustache det. [p]”.
Remarks. The only known specimen of this nominal species was collected on the watershed separating the Blue Nile basin and that of Awash River (spelt as “Hawash” in Omer-Cooper [1930], map 2) some 75 km W of Addis-Ababa and at relatively high altitude of about 2438–2743 meters.
description: Published as part of Grebennikov, Vasily V., 2018, Both non-type species of Molytophilus (Coleoptera: Curculionidae: Molytinae) are transferred to Oreoscotus, pp. 393-396 in Zootaxa 4418 (4) on page 395, DOI: 10.11646/zootaxa.4418.4.6, http://zenodo.org/record/1244950
MOESM2 of A systematic review of the efficacy of a single dose artemisininâ  naphthoquine in treating uncomplicated malaria
Creators: name: Naing, Cho
name: Whittaker, Maxine
name: Mak, Joon
name: Kyan Aung
Publisher: name: Figshare
Year: 2015
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 2. Characteristics of the included studies.
Eburodacrys longilineata White 1853
Creators: name: Monné, Miguel A.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Eburodacrys
Eburodacrys longilineata

description: 27. Eburodacrys longilineata White, 1853
Eburodacrys longilineata White, 1853: 93.
Eburia basicornis Dohrn, 1882: 373.
Distribution. Brazil (Rio Grande do Norte, Paraíba, Ceará, Bahia, Minas Gerais, Espírito Santo, Rio de Janeiro, São Paulo, Paraná, Santa Catarina, Rio Grande do Sul), Bolivia (Santa Cruz), Paraguay, Argentina, Uruguay.
Specimen examined. BRAZIL, Minas Gerais: Mun. Catas Altas, RPPN Serra do Caraça, 1350 m, male, XII.1975, M.A. Monné.
description: Published as part of Monné, Miguel A., 2017, New species and new records of Cerambycidae (Insecta, Coleoptera) from RPPN Sanctuary of Caraça, Minas Gerais, Brazil, pp. 201-262 in Zootaxa 4319 (2) on pages 209-210, DOI: 10.11646/zootaxa.4319.2.1, http://zenodo.org/record/889107
Additional file 1: of Rotating shift work and menstrual characteristics in a cohort of Chinese nurses
Creators: name: Yizi Wang
name: Gu, Fang
name: Mingfen Deng
name: Guo, Lan
name: Ciyong Lu
name: Canquan Zhou
name: Shouzhen Chen
name: Yanwen Xu
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology

description: Questionnaire. (DOC 154 kb)
Structural characterization of superbug proteins involved in regulating beta-lactam resistance
Creators: name: Wilke, Mark Steven
Publisher: name: University of British Columbia
Year: 2008

description: The widespread use of β-lactams has undermined their effectiveness as chemotherapeutic agents by fueling the evolution and dissemination of multiple resistance mechanisms, including: (1) production of hydrolytic β-lactamase enzymes that inactivate β-­lactams, (2) expression of PBPs with low-affinity for β-­lactams and (3) overexpression of multidrug efflux pumps which actively expunge β-­lactams and other toxic substances. The overall goal of this thesis is the structural characterization of bacterial proteins involved in regulating β-lactam resistance. The notorious resistance of Staphylococcus aureus primarily stems from the production of β-lactamases and PBP2a, a low-affinity PBP which confers broad-spectrum β-­lactam resistance in methicillin-resistant S. aureus (MRSA) strains. Expression of these resistance determinants is controlled by a β-­lactam-inducible transmembrane receptor (BlaR1/MecR1) and repressor (BlaI/MecI). This dissertation presents the crystal structure of the BlaR1 sensor domain (BlaRs) from S. aureus, determined in its apo form and acylated with penicillin G. These structures reveal that acylation by β-lactams is not accompanied by a BlaRs conformational change. It is also shown that mutation of the BlaR1 L2 loop prevents induction of β-­lactamase expression in vivo, supporting that the L2 loop plays an important role in signal transduction. The intrinsic resistance of Pseudomonas aeruginosa to a variety of antibiotics (including β-lactams) is exacerbated in mutant strains that overexpress multidrug efflux pumps such as MexAB-OprM. Production of MexAB-OprM is controlled by the MarR family repressor, MexR, and several hyper-resistant strains of P. aeruginosa appear to involve mutations in either MexR or additional regulatory factors upstream of MexR. The allosteric effectors of MarR proteins are typically small lipophenolic compounds. This dissertation confirms that MexR is uniquely modulated by the 53 residue protein, ArmR. Electromobility gel shift assays and isothermal titration calorimetry demonstrate that a direct MexR-ArmR interaction is responsible for neutralizing the affinity of MexR for its DNA operator. The allosteric conformational change induced by ArmR-binding was assessed by determining the crystal structure of MexR double mutant Q106L/A110L (MexRLL) in complex with ArmR residues 29-53 (ArmRC). This structure shows that ArmR induces a dramatic conformational change which repositions the MexR DNA-binding lobes into an orientation that is incompatible with binding DNA.
Oreoscotus puncticollis Grebennikov 2018, comb. n.
Creators: name: Grebennikov, Vasily V.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Curculionidae
Oreoscotus
Oreoscotus puncticollis

description: Oreoscotus puncticollis (Hustache, 1936) comb. n. (Figs. 2C, D)
Molytophilus puncticollis Hustache, 1936: 492 (description), 493 (habitus illustration)
Type locality: Abyssinie.
Type specimens: Primary: Holotype (by original designation, Fig. 2C, D), female (MNHN): “Abyss. R. [h] \ Gen. nov. nr. Niphades. Another sp. in BM. [h] \ TYPE [p]”. Secondary: Paratype (MNHN): not studied. Described from two specimens (holotype, paratype).
Remark: Hustache noted that the holotype has been deposited in MNHN, while the paratype has remained in his collection. Later the Hustache collection was incorporated into MNHN. The only specimen located in MNHN in 2011 has the label “ Type ” and is, therefore, considered to be the holotype.
description: Published as part of Grebennikov, Vasily V., 2018, Both non-type species of Molytophilus (Coleoptera: Curculionidae: Molytinae) are transferred to Oreoscotus, pp. 393-396 in Zootaxa 4418 (4) on page 396, DOI: 10.11646/zootaxa.4418.4.6, http://zenodo.org/record/1244950
Eburodacrys luederwaldti Melzer 1922
Creators: name: Monné, Miguel A.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Eburodacrys
Eburodacrys luederwaldti

description: 28. Eburodacrys luederwaldti Melzer, 1922
Eburodacrys luederwadti Melzer, 1922: 4 (error).
Eburodacrys luederwaldti; Melzer, 1927: 151.
Distribution. Brazil (Maranhão, Minas Gerais, Espírito Santo, Rio de Janeiro, São Paulo, Paraná, Santa Catarina). Specimen examined. BRAZIL, Minas Gerais: Mun. Catas Altas, RPPN Serra do Caraça, 1350 m, male, 2.XII.1972, F.M. Oliveira.
description: Published as part of Monné, Miguel A., 2017, New species and new records of Cerambycidae (Insecta, Coleoptera) from RPPN Sanctuary of Caraça, Minas Gerais, Brazil, pp. 201-262 in Zootaxa 4319 (2) on page 210, DOI: 10.11646/zootaxa.4319.2.1, http://zenodo.org/record/889107
Additional file 1: Table S1. of Exposure to sub-chronic and long-term particulate air pollution and heart rate variability in an elderly cohort: the Normative Aging Study
Creators: name: Mordukhovich, Irina
name: Coull, Brent
name: Kloog, Itai
name: Koutrakis, Petros
name: Pantel Vokonas
name: Schwartz, Joel
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Developmental Biology
subject: Cancer

description: Spearman correlation coefficients between selected exposure measurement intervals for BC and PM2.5a. BC: black carbon; PM2.5: particulate matter <2.5 Îźm in aerodynamic diameter a. Normative Aging Study (2000â  2011). (DOC 39Â kb)
Scolopendromorpha Leach 1815
Creators: name: Schileyko, Аrkаdy А.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Chilopoda
Scolopendromorpha

description: List of Scolopendromorpha of Saint Barthélemy Island
Data on the Chilopoda of St. Barthélemy Island is very scarce. In 1847, C.L. Koch described Scolopendra crudelis from “Barthelmi”. Shelley (2006) recorded four species of the genus Scolopendra for this island: S. alternans Leach, 1815 (p. 6 + Shelley 2002: 36) (erroneously noted by Bonato et al. (2016) as “Leach, 1913”; for details see Shelley 2006: 6–7), S. crudelis (p. 13), S. morsitans L., 1758 (p. 5) and S. subspinipes Leach, 1815 (p. 7). Аs for the last two widespread species, they were undoubtedly introduced in this part of the New World.
Questel (2012) recorded from the St. Barthélemy Island S. morsitans (Fig. 27), S. subspinipes, S. alternans, Cormocephalus sp., Otostigmus sp., Newportia sp., “2 not identified genera” of Geophilomorpha and Scutigera sp. Considering all those data and the results of the present study, the scolopendromorph fauna of St. Barthélemy Island currently contains 8 species belonging to 4 genera: Newportia (family Scolopocryptopidae), Otostigmus, Cormocephalus and Scolopendra (all Scolopendridae). There are no endemic taxa, while 2 species (S. morsitans and S. subspinipes) seem to be introduced on the island due to human activity. Newportia longitarsis virginensis, N. heteropoda and Cormocephalus i. impressus are recorded from the St. Barthélemy Island for the first time.
The lack of species of Scolopocryptops, Newportia (Tidops), Rhysida and Cryptops, scolopendromorph taxa common in the region, can be explained by the relative youth of the island’s fauna and/or insufficient sampling. Аs the presence of Scolopocryptops, Newportia (Tidops), Rhysida and Cryptops is quite probable at St. Barthélemy, I include them in the key marked with asterisk.
description: Published as part of Schileyko, Аrkаdy А., 2018, A contribution to the knowledge of the centipedes of Saint Barthélemy Island (French Antilles), with re-descriptions of Newportia heteropoda Chamberlin, 1918 and Cormocephalus impressus Porat, 1876 (Chilopoda: Scolopendromorpha), pp. 59-78 in Zootaxa 4438 (1) on page 76, DOI: 10.11646/zootaxa.4438.1.2, http://zenodo.org/record/1294191
Additional file 1: of Incidence, prevalence and genetic determinants of neonatal diabetes mellitus: a systematic review and meta-analysis protocol
Creators: name: Jobert Nansseu
name: Ngo-Um, Suzanne
name: Balti, Eric
Publisher: name: Figshare
Year: 2016
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: PRISMA-P checklist. This document shows where the different items required in the PRISMA guidelines for protocols appear in the present document. (DOCX 24 kb)
Effectiveness of workplace violence prevention against ED nurses: a mixed methods systematic review with knowledge translation
Creators: name: Kovalev, Diana
name: Zeller, Victoria
Publisher: name: No Publisher Supplied
Year: 2024

description: Purpose of Project: This project aimed to synthesize and translate available data on the effect of workplace violence (WPV) training for ED nurses on nursing perception and confidence with handling WPV. The types of training methods we sought to compare were traditional in-person education versus simulation training. Methods: This review systematically searched Rutgers Libraries databases CINAHL, PubMed, and MEDLINE (Ovid). Two reviewers independently assessed studies for inclusion. Data were extracted by both reviewers and discrepancies were resolved through discussion. Results: The meta-analysis yielded four overarching findings: efficacious outcomes of in-class WPV prevention training, stronger relationships, in-class simulation offers role clarity, and participants calling for more than one training session. Quantitative nursing confidence related to the exposure of WPV prevention training was measured with pooled odds ratio using a random effects model. The overall odds of 0.31 (95% CI 0.22, 0.44; p = <0.001) was statistically significant, meaning that nurses who participated in WPV prevention training had 0.31 times the odds of having more confidence when faced with WPV compared to nurses without exposure to WPV prevention training. Implications: Based on the findings of this review, it is recommended hospital emergency departments implement traditional classroom-style education followed by simulation training multiple times annually to improve nursing confidence with handling WPV. This review can serve as the basis of a call to action for implementation of WPV training for ED nurses at the local, state, and national level.
Eburodacrys notula Gounelle 1909
Creators: name: Monné, Miguel A.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Eburodacrys
Eburodacrys notula

description: 29. Eburodacrys notula Gounelle, 1909 (Figure 6)
Eburodacrys notula Gounelle, 1909: 632.
Distribution. Brazil (Amazonas, Maranhão, Mato Grosso, Tocantins, Distrito Federal, Goiás, Minas Gerais), Bolivia.
Specimen examined. BRAZIL, Minas Gerais: Mun. Catas Altas, RPPN Serra do Caraça, 1350 m, male, 8– 12.XII.2014, J.P. Botero, A. Carelli, M. Cupello & D. Souza.
description: Published as part of Monné, Miguel A., 2017, New species and new records of Cerambycidae (Insecta, Coleoptera) from RPPN Sanctuary of Caraça, Minas Gerais, Brazil, pp. 201-262 in Zootaxa 4319 (2) on page 210, DOI: 10.11646/zootaxa.4319.2.1, http://zenodo.org/record/889107
MOESM2 of Three-year mortality in 30-day survivors of critical care with acute kidney injury: data from the prospective observational FINNAKI study
Creators: name: Mildh, Henriikka
name: Pettilä, Ville
name: Anna-Maija Korhonen
name: Karlsson, Sari
name: Ala-Kokko, Tero
name: Reinikainen, Matti
name: Vaara, Suvi
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Additional file 2: Figure S1. Distribution plot showing the frequency of confounders before and after matchingamong patients with and without acute kidney injury.
MOESM1 of Three-year mortality in 30-day survivors of critical care with acute kidney injury: data from the prospective observational FINNAKI study
Creators: name: Mildh, Henriikka
name: Pettilä, Ville
name: Anna-Maija Korhonen
name: Karlsson, Sari
name: Ala-Kokko, Tero
name: Reinikainen, Matti
name: Vaara, Suvi
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Marine Biology
subject: Science Policy

description: Additional file 1: Table S1. Logistic regression model used construct the propensity score for acute kidney injury.Table S2. The characteristics of all acute kidney injury patients and a comparison between matched and nonmatchedpatients with acute kidney injury. Table S3. The results of multivariable adjusted Cox proportionalhazards model for three-year mortality after excluding patients with chronic kidney disease. Table S4. Results ofmultivariable adjusted Cox proportional hazards model for time to death during the three-year follow-up amongpatients with acute kidney injury who received renal replacement therapy (n=192) and patients without acutekidney injury. Table S5. The results of multivariable adjusted Cox proportional hazards model for time to deathduring the three-year follow-up after excluding patients with estimated pre-admission creatinine, chronic kidneydisease, or stage 1 acute kidney injury. Table S6. The unadjusted and multivariable adjusted hazard ratios (HR) foracute kidney injury (AKI) in time-stratified Cox models for time to death in three-year follow-up.
MOESM1 of “Noisy beets”: impact of phenotyping errors on genomic predictions for binary traits in Beta vulgaris
Creators: name: Biscarini, Filippo
name: Nazzicari, Nelson
name: Broccanello, Chiara
name: Stevanato, Piergiorgio
name: Marini, Simone
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 1: Figure S1. TPR/TNR variability with all SNP and with subsets of 30 or 50 SNP Distribution of TPR (red) and TNR (blue) in the validation set using KNN and RF with all 175 SNP and with subsets of 50 and 30 SNP. TPR and TNR as a function of mislabeled observations, from a 5-fold cross validation repeated 100 times. Results are presented per method.
Belonocnema fossoria Weld 1921
Creators: name: Zhang, Y. Miles
name: Egan, Scott P.
name: Driscoe, Amanda L.
name: Ott, James R.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Cynipidae
Belonocnema
Belonocnema fossoria

description: BELONOCNEMA FOSSORIA, WELD, 1921, REV. STAT.
(FIGS 1A–D, 3)
description: Published as part of Zhang, Y. Miles, Egan, Scott P., Driscoe, Amanda L. & Ott, James R., 2021, One hundred and sixty years of taxonomic confusion resolved: Belonocnema (Hymenoptera: Cynipidae: Cynipini) gall wasps associated with live oaks in the USA, pp. 1234-1255 in Zoological Journal of the Linnean Society 193 (4) on page 1244, DOI: 10.1093/zoolinnean/zlab001, http://zenodo.org/record/5761660
Additional file 4: of Understanding the dispensary workflow at the Birmingham Free Clinic: a proposed framework for an informatics intervention
Creators: name: Fisher, Arielle
name: Herbert, Mary
name: Douglas, Gerald
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Pharmacist quotations to explain workflow challenge themes. Items in bold are highest ranked workflow challenges as perceived by the pharmacists. (PDF 63 kb)
Additional file 4: of The BisPCR2 method for targeted bisulfite sequencing
Creators: name: Bernstein, Diana
name: Vasumathi Kameswaran
name: Lay, John Le
name: Sheaffer, Karyn
name: Kaestner, Klaus
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Plant Biology

description: Table S2. PCR#2 primer sequences for library amplification and barcoding. Amplification with PCR#2 primers adds the remainder of adapter sequence and unique barcodes for up to 48 samples. A common forward primer, â  Library_Primer1,â   is used in combination with each unique barcoding reverse primer.
Structural performance of rounded dovetail connections
Creators: name: Tannert, Thomas
Publisher: name: University of British Columbia
Year: 2008

description: The structural performance of Rounded Dovetail Connections (RDC) has been studied experimentally and numerically to provide information needed for connection structural design. RDC are mainly used to transfer vertical shear forces, but test results show that they can carry considerable load in tension and bending. Geometric parameters, such as dovetail flange angle and dovetail height are shown to significantly effect affect the structural performance of RDC. Results show that it is impractical to determine a set of empirical equations to describe the structural performance of RDC based on basic wood material properties. RDC manufactured and tested with low and constant moisture content outperformed those evaluated under other climatic conditions, and test results demonstrate that RDC should be produced at low machine speed and with minimal a gap between the connecting members. RDC in laminated strand lumber have higher capacity and fail under larger deformations compared to RDC in western hemlock. A three-dimensional finite element method model is presented and validated with experimental tests. Good agreement is achieved between the load deformation response predicted by the model and the experimentally observed load deformation response. Therefore the model is deemed suitable for estimating the stresses needed to develop failure criteria. A failure criterion for the analysis of RDC is presented taking into account size effect in the strength of wood. Based on the experimental and numerical studies, a design equation for RDC is presented that provides the engineering community with a new design tool. Finally, self tapping screws as reinforcement have been studied and are shown to significantly improve the structural performance of RDC under vertical shear loading.
Additional file 5: Methods S1. of Home-field advantage? evidence of local adaptation among plants, soil, and arbuscular mycorrhizal fungi through meta-analysis
Creators: name: RĂşa, Megan
name: Antoninka, Anita
name: Antunes, Pedro
name: V. Chaudhary
name: Gehring, Catherine
name: Lamit, Louis
name: Piculell, Bridget
name: Bever, James
name: Zabinski, Cathy
name: Meadow, James
name: Lajeunesse, Marc
name: Milligan, Brook
name: Karst, Justine
name: Hoeksema, Jason
Publisher: name: Figshare
Year: 2016
Subjects: subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified

description: Creation and Update of MycoDB. (PDF 275Â kb)
Additional file 1: of Attitudes and opinions regarding confirmatory adaptive clinical trials: a mixed methods analysis from the Adaptive Designs Accelerating Promising Trials into Treatments (ADAPT-IT) project
Creators: name: Meurer, William
name: Legocki, Laurie
name: Samkeliso Mawocha
name: Frederiksen, Shirley
name: Guetterman, Timothy
name: Barsan, William
name: Lewis, Roger
name: Berry, Donald
name: Fetters, Michael
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: ADAPT-IT general-coreq-FINAL. Consolidated criteria for reporting qualitative research (COREQ) checklist contents: responses to the 32-item COREQ checklist as applicable to the current research study. (DOCX 26 kb)
Cormocephalus NEwpORT 1844
Creators: name: Schileyko, Аrkаdy А.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Chilopoda
Scolopendromorpha
Scolopendridae
Cormocephalus

description: Genus Cormocephalus Newport, 1844
Type-species. Cormocephalus rubriceps Newport, 1843 (by subsequent designаtion of Attems 1930: 61).
Range. Аll tropical and subtropical regions with temperate climate.
description: Published as part of Schileyko, Аrkаdy А., 2018, A contribution to the knowledge of the centipedes of Saint Barthélemy Island (French Antilles), with re-descriptions of Newportia heteropoda Chamberlin, 1918 and Cormocephalus impressus Porat, 1876 (Chilopoda: Scolopendromorpha), pp. 59-78 in Zootaxa 4438 (1) on page 69, DOI: 10.11646/zootaxa.4438.1.2, http://zenodo.org/record/1294191
Response of uneven-aged in interior Douglas-fir stands to precommercial thinning in central interior, British Columbia
Creators: name: Lee, Taehee
Publisher: name: University of British Columbia
Year: 2008

description: Proper management of uneven-aged interior Douglas-fir (Pseudotsuga menziesii var. glauca) stands is important for British Columbia’s central and southern interior. These stands constitute one of main components of the operable forest land in these areas, with easy access from main roads and towns. This study focused on the growth of uneven-aged Douglas-fir stands after pre-commercial thinning (spacing), with an impetus to improve upon current management practices. Data were collected from 24 permanent sample plots which were established near Williams Lake, British Columbia in 1989; thinning took place between 1990 and 1991. Three measurements have been made post-treatment: 1993, 1997 and 2004. The plot data were used to analyze different growth responses among three different spacing regimes (standard, 3 m clumped and 5 m clumped spacing) and a control. Analyses were performed at both the stand and tree level. The growth of basal area per ha, quadratic mean dbh, volume per ha and Lorey’s height were used for stand level analyses. At the tree level, dbh, height, basal area and volume were the variables of interest. At the stand level, mortality increased (7.1 to 107.1 stems/ha) and ingrowth decreased (2.4 to 8.6 stems/ha) for the second growth period (1997-2003), compared to the first growth period (5.8 to 107.1 stems/ha and 5.0 to 12.4 stems/ha, respectively). No significant differences in annual growth of quadratic mean dbh, basal area and volume per ha and Lorey’s height were noted between the different spacing regimes and the control. At the individual tree level, the 5 m clumped spacing regime usually had the highest dbh, basal area and volume growth for both growth periods. The one exception was for height growth, when analyzed using mixed-effects modeling, where no significant differences were found. Trees on the other two spacing regimes also had higher growth in dbh, basal area, and volume than trees on the control plots. The positive growth response to the spacing treatments at the single tree level was obtained without a reduction in growth at the stand level. This growth increase will result in the residual trees reaching larger sizes more quickly than they would have with no treatment, leading to improved mule deer winter range habitat and higher timber values.
Additional file 2: Figure S1. of Home-field advantage? evidence of local adaptation among plants, soil, and arbuscular mycorrhizal fungi through meta-analysis
Creators: name: RĂşa, Megan
name: Antoninka, Anita
name: Antunes, Pedro
name: V. Chaudhary
name: Gehring, Catherine
name: Lamit, Louis
name: Piculell, Bridget
name: Bever, James
name: Zabinski, Cathy
name: Meadow, James
name: Lajeunesse, Marc
name: Milligan, Brook
name: Karst, Justine
name: Hoeksema, Jason
Publisher: name: Figshare
Year: 2016
Subjects: subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Mean Plant Response to Mycorrhizal Inoculation (PDF 113Â kb)