cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Assessing the Impacts of Co-Management on Protected Area Landscape under Socio-Imagery Lens: Evidence from Bangladesh
Creators: name: Chowdhury, Faqrul Islam
name: Islam, Kamrul
name: Al Faroque, Mohiuddin
name: Islam, Kazi Nazrul
name: Rahman, Md. Farhadur
name: Arif, Md. Tanjimul Alam
name: Nath, Tapan Kumar
name: Jashimuddin, Mohammed
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Bangladesh Forest Department had undertaken co-management of protected area (PA) initiatives for halting the rapid rate of forest degradation and deforestation in the country. However, only few research has been conducted to assess the effectiveness of co-management. In this study, drawing empirical data from two co-managed PA, namely, Bariyadhala National Park (BDNP) and Hazarikhil Wildlife Sanctuary (HWS), we investigated the impacts of co-management on spatio-temporal patterns of land use and land cover change, forest fragmentation, and local peoples’ perception on how co-management approach was underpinning these changes in the studied PA landscape. Results showed that forest cover (4800 ha gain) and forest patches (26 patch gain) had increased in two studied PA while agricultural practices and resources extractions from forest had decreased during the study period. The increase in forest coverage might be attributed to the reforestation program (3253.81 ha) undertaken under the co-management project. More than 90% of respondents admitted that various activities on co-management such as awareness creation, restriction on hunting, and forest products collection have had positive impacts on biodiversity conservation. The findings of this research would be useful to formulate future course of actions regarding forest PA co-management in Bangladesh, and elsewhere.
Testing Homogeneity for Normal Mixture Models: Variational Bayes Approach
Creators: name: Kariya, Natsuki
name: Watanabe, Sumio
Publisher: name: arXiv
Year: 2019
Subjects: subject: Statistics Theory (math.ST)
subject: Methodology (stat.ME)
subject: FOS: Mathematics
subject: FOS: Computer and information sciences

description: The test of homogeneity for normal mixtures has been conducted in diverse research areas, but constructing a theory of the test of homogeneity is challenging because the parameter set for the null hypothesis corresponds to singular points in the parameter space. In this paper, we examine this problem from a new perspective and offer a theory of hypothesis testing for homogeneity based on a variational Bayes framework. In the conventional theory, the constant order term of the free energy has remained unknown, however, we clarify its asymptotic behavior because it is necessary for constructing a hypothesis test. Numerical experiments shows the validity of our theoretical results.
description: 29 pages, 3 figures
title: Text/Conference Paper
Creators: name: Kalle, Timo
name: Kaufhold, Marc-André
name: Kuntke, Franz
name: Reuter, Christian
name: Rizk, Amr
name: Steinmetz, Ralf
Publisher: name: Gesellschaft für Informatik e.V.
Year: 2019
Subjects: subject: Resilience
subject: Communication Networks
subject: Adaption
subject: Transition
subject: Security
subject: Crisis

description: Currently, there is a tremendous number of communication technology and systems in use. Not only in the private user space, but also in business operations and societal areas, they are deeply involved: Ranging from messaging services or navigation over (critical) SCADA systems to whole digital cities and communities. Consequently, the view on communication networks in security and particularly crisis scenarios becomes inevitable. This paper examines the notions of resilience, adaption and transition within communication networks with a specific focus on crises. Based on a structured literature review, the fundamentals of resilience and communication networks are introduced. The paper then discusses the characteristics of (a) evolvability, accessibility, usability and diversity as well as (b) self-organization, -management, -optimization, - monitoring, -healing and -protection for communication network resilience. Finally, it outlines challenges and potentials of communication network resilience based in the use cases of security and crises.
Bipolar outflow on the Asymptotic Giant Branch - the case of IRC+10011
Creators: name: Vinkovic, D.
name: Bloecker, Th.
name: Hofmann, K. -H.
name: Elitzur, M.
name: Weigelt, G.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Near-IR imaging of the AGB star IRC+10011 (= CIT3) reveals the presence of a bipolar structure within the central ~0.1 arcsec of a spherical dusty wind. We show that the image asymmetries originate from ~1E-4 Msun of swept-up wind material in an elongated cocoon whose expansion is driven by bipolar jets. We perform detailed 2D radiative transfer calculations with the cocoon modeled as two cones extending to ~1,100 AU within an opening angle of ~30deg, imbedded in a wind with the standard r^{-2} density profile. The cocoon expansion started
description: accepted for publication in MNRAS, high-resolution pdf version can be found at http://www.leluya.org/downloads/Vinkovic_et_al_IRC+10011.pdf
Additional file 3 of Predicting the allergenicity of legume proteins using a PBMC gene expression assay
Creators: name: Smits, Mark
name: Meijerink, Marjolein
name: Thuy-My Le
name: Knulst, André
name: De Jong, Aard
name: Caspers, Martinus Petrus Maria
name: Everton Souto Lima
name: Babé, Lilia
name: Ladics, Gregory
name: McClain, Scott
name: Houben, Geert
name: Verhoeckx, Kitty
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Plant Biology

description: Additional file 3: Table 3. Multiplex gene set 1. Table containing the sequences of the primers and probes of CCL2 and IL-24 designed with primer express software (Applied Biosystems).
Scaling of the spin stiffness in random spin-1/2 chains : Crossover from pure-metallic behaviour to random singlet-localized regime
Creators: name: Laflorencie, Nicolas
name: Rieger, Heiko
Publisher: name: arXiv
Year: 2004
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: In this paper we study the localization transition induced by the disorder in random antiferromagnetic spin-1/2 chains. The results of numerical large scale computations are presented for the XX model using its free fermions representation. The scaling behavior of the spin stiffness is investigated for various disorder strengths. The disorder dependence of the localization length is studied and a comparison between numerical results and bosonization arguments is presented. A non trivial connection between localization effects and the crossover from the pure XX fixed point to the infinite randomness fixed point is pointed out.
description: Published version, 7 pages, 6 figures
GG Tau A: gas properties and dynamics from the cavity to the outer disk
Creators: name: Phuong, N. T.
name: Dutrey, A.
name: Diep, P. N.
name: Guilloteau, S.
name: Chapillon, E.
name: Di Folco, E.
name: Tang, Y-W.
name: Pietu, V.
name: Bary, J.
name: Beck, T.
name: Hersant, F.
name: Hoai, D. T
name: Hure, J. M.
name: Nhung, P. T.
name: Pierens, A.
name: Tuan-Anh, P.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We used new ALMA $^{13}$CO and C$^{18}$O(3-2) observations obtained at high angular resolution ($\sim$0.2") together with previous CO(3-2) and (6-5) ALMA data and continuum maps at 1.3 and 0.8 mm in order to determine the gas properties (temperature, density, and kinematics) in the cavity and to a lesser extent in the outer disk of GG Tau A, the prototype of a young triple T Tauri star that is surrounded by a massive and extended Keplerian outer disk. By deprojecting, we studied the radial and azimuthal gas distribution and its kinematics. We also applied a new method to improve the deconvolution of the CO data and in particular better quantify the emission from gas inside the cavity. We perform local and nonlocal thermodynamic equilibrium studies in order to determine the excitation conditions and relevant physical parameters inside the ring and in the central cavity. Residual emission after removing a smooth-disk model indicates unresolved structures at our angular resolution, probably in the form of irregular rings or spirals. The outer disk is cold, with a temperature $<20$ K beyond 250 au that drops quickly (r$^{-1}$). The kinematics of the gas inside the cavity reveals infall motions at about 10% of the Keplerian speed. We derive the amount of gas in the cavity, and find that the brightest clumps, which contain about 10% of this mass, have kinetic temperatures 40$-$80 K, CO column densities of a few 10$^{17}$ cm$^{-2}$, and H$_2$ densities around 10$^7$ cm$^{-3}$. Although the gas in the cavity is only a small fraction of the disk mass, the mass accretion rate throughout the cavity is comparable to or higher than the stellar accretion rate. It is accordingly sufficient to sustain the circumstellar disks on a long timescale.
description: 18 pages, 14 figures
The need for a second black hole at the Galactic center
Creators: name: Hansen, Brad
name: Milosavljevic, Milos
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Deep infra-red observations and long-term monitoring programs have provided dynamical evidence for a supermassive black hole of mass 3.e6 solar masses associated with the radio source Sagitarrius A* at the center of our Galaxy. The brightest stars orbiting within 0.1 parsecs of the black hole appear to be young, massive main sequence stars, n spite of an environment near the black hole that is hostile to star formation. We discuss mechanisms by which stars born outside the central parsec can sink towards the black hole and conclude that the drag coming from plausible stellar populations does not operate on the short timescales required by the stellar ages. We propose that these stars were dragged in by a second black hole of mass of 1.e3-1.e4 solar masses, which would be classified as an intermediate-mass black hole. We discuss the implications for the stellar populations and the kinematics in the Galactic center. Finally we note that continued astrometric monitoring of the central radio source offers the prospect for a direct detection of such objects.
description: 5 pages, 2 postscript figures, submitted to ApJ letters The introduction section has been updated since submission to ApJ
Additional file 2 of Transgenerational effect of mutants in the RNA-directed DNA methylation pathway on the triploid block in Arabidopsis
Creators: name: Zhenxing Wang
name: Butel, Nicolas
name: Santos-González, Juan
name: Simon, Lauriane
name: Wärdig, Cecilia
name: Köhler, Claudia
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2: Table S1. Quality of sequencing samples.
Theory of neuromorphic computing by waves: machine learning by rogue waves, dispersive shocks, and solitons
Creators: name: Marcucci, Giulia
name: Pierangeli, Davide
name: Conti, Claudio
Publisher: name: arXiv
Year: 2019
Subjects: subject: Optics (physics.optics)
subject: Quantum Gases (cond-mat.quant-gas)
subject: Machine Learning (cs.LG)
subject: Pattern Formation and Solitons (nlin.PS)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: We study artificial neural networks with nonlinear waves as a computing reservoir. We discuss universality and the conditions to learn a dataset in terms of output channels and nonlinearity. A feed-forward three-layer model, with an encoding input layer, a wave layer, and a decoding readout, behaves as a conventional neural network in approximating mathematical functions, real-world datasets, and universal Boolean gates. The rank of the transmission matrix has a fundamental role in assessing the learning abilities of the wave. For a given set of training points, a threshold nonlinearity for universal interpolation exists. When considering the nonlinear Schroedinger equation, the use of highly nonlinear regimes implies that solitons, rogue, and shock waves do have a leading role in training and computing. Our results may enable the realization of novel machine learning devices by using diverse physical systems, as nonlinear optics, hydrodynamics, polaritonics, and Bose-Einstein condensates. The application of these concepts to photonics opens the way to a large class of accelerators and new computational paradigms. In complex wave systems, as multimodal fibers, integrated optical circuits, random, topological devices, and metasurfaces, nonlinear waves can be employed to perform computation and solve complex combinatorial optimization.
description: 5 pages, 4 figures
Osmeridae
Creators: name: Arai, Hisao P.
name: Smith, John W.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Osmeriformes
Osmeridae

description: Family Osmeridae
Hypomesus pretiosus (Girard) Surf Smelt Contracaecum sp.
Hysterothylacium aduncum
Mallotus villosus (Müller) Capelin Anisakis simplex
Anisakis sp.
Ascarophis sp.
Contracaecinea gen. sp. Contracaecum osculatum Contracaecum sp.
Contracaecum sp. and/or Phocascaris sp. Hysterothylacium aduncum Hysterothylacium sp.
Nematoda gen. sp.
Phocascaris sp.
Pseudoterranova decipiens Spirurida gen. sp.
Osmerus mordax (Mitchill) Rainbow Smelt Anisakis sp.
Ascarophis arctica
Capillaria (Capillaroides) catenata Cosmocephalus obvelatus
Cystidicola farionis
Cystidicola stigmatura
Hysterothylacium sp.
Philometra sp.
Philonema agubernaculum Pseudocapillaria (Ichthyocapillaria) salvelini Pseudoterranova decipiens Pseudoterranova sp.
Spinitectus carolini
Spinitectus gracilis
Thaleichthys pacificus (Richardson) Eulachon Contracaecum sp.
description: Published as part of Arai, Hisao P. & Smith, John W., 2016, Guide to the Parasites of Fishes of Canada Part V: Nematoda, pp. 1-274 in Zootaxa 4185 (1) on pages 189-190, DOI: 10.11646/zootaxa.4185.1.1, http://zenodo.org/record/165530
Assessing the Impacts of Co-Management on Protected Area Landscape under Socio-Imagery Lens: Evidence from Bangladesh
Creators: name: Chowdhury, Faqrul Islam
name: Islam, Kamrul
name: Faroque, Mohiuddin Al
name: Islam, Kazi Nazrul
name: Rahman, Md. Farhadur
name: Arif, Md. Tanjimul Alam
name: Nath, Tapan Kumar
name: Jashimuddin, Mohammed
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Bangladesh Forest Department had undertaken co-management of protected area (PA) initiatives for halting the rapid rate of forest degradation and deforestation in the country. However, only few research has been conducted to assess the effectiveness of co-management. In this study, drawing empirical data from two co-managed PA, namely, Bariyadhala National Park (BDNP) and Hazarikhil Wildlife Sanctuary (HWS), we investigated the impacts of co-management on spatio-temporal patterns of land use and land cover change, forest fragmentation, and local peoples’ perception on how co-management approach was underpinning these changes in the studied PA landscape. Results showed that forest cover (4800 ha gain) and forest patches (26 patch gain) had increased in two studied PA while agricultural practices and resources extractions from forest had decreased during the study period. The increase in forest coverage might be attributed to the reforestation program (3253.81 ha) undertaken under the co-management project. More than 90% of respondents admitted that various activities on co-management such as awareness creation, restriction on hunting, and forest products collection have had positive impacts on biodiversity conservation. The findings of this research would be useful to formulate future course of actions regarding forest PA co-management in Bangladesh, and elsewhere.
Sutrisno et al-ICERM BALI 2017.pdf
Creators: name: Pendi Tri Sutrisno
name: Badaruddin, Muhammad
name: Yogaswara, Brian
name: Sigit Heru Murti
Publisher: name: figshare
Year: 2020
Subjects: subject: 50302 Land Capability and Soil Degradation
subject: FOS: Agriculture, forestry and fisheries

description: Identification of geomorphological characteristics of the landform could be
done by remote sensing data analysis. Remote sensing able to provide data covering
wide area and increase the work effectiveness by minimizing field survey activity of
unreachable area, especially the study of identification of landform geomorphology
characteristics. This study aims to recognize geomorphological characteristics of
landform and along with the natural resources and the threat of land degradation
probably occurred. The method in this research started by interpreting the Landsat 8
image in path 118 and row 66 resulted of data acquisition 2015 which is focused in
Malang Regency of East Java Province. The Landsat 8 image was first processed simply
by visual sharpening and image composites to produce a clear physiographic appearance
of the earth's surface. Interpretation of reliefs and geomorphological structures of
landform which is used as a field survey reference. The field survey is conducted in
accordance with the pathway based on the diversity of geomorphological characteristics
of the landform and the possibility of the area to be reached. The results of Landsat 8
image interpretation are supported by DEM data as well as the result of direct
identification of field survey used as a reference in the analysis of natural resource
potential and the threat of land degradation occurring in each characteristic of its
landform. The result of geomorphological identification of the landform is obtained
from the detailing of Landscape origin process in Malang Regency, namely the
landscape of volcanic (65.27%), fluvial (1.13%), structural (14.34%), denudational
(0.91%), organic (0.28%), and solutional process (18.06%).
Additional file 4 of Predicting the allergenicity of legume proteins using a PBMC gene expression assay
Creators: name: Smits, Mark
name: Meijerink, Marjolein
name: Thuy-My Le
name: Knulst, André
name: De Jong, Aard
name: Caspers, Martinus Petrus Maria
name: Everton Souto Lima
name: Babé, Lilia
name: Ladics, Gregory
name: McClain, Scott
name: Houben, Geert
name: Verhoeckx, Kitty
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Plant Biology

description: Additional file 4: Table 4. Multiplex gene set 2. Table containing the sequences of the primers and probes of CCL7 and RASD2 designed with primer express software (Applied Biosystems).
Additional file 1 of Transgenerational effect of mutants in the RNA-directed DNA methylation pathway on the triploid block in Arabidopsis
Creators: name: Zhenxing Wang
name: Butel, Nicolas
name: Santos-González, Juan
name: Simon, Lauriane
name: Wärdig, Cecilia
name: Köhler, Claudia
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Figure S1. Rescue of 3x seed abortion using 4x RdDM mutants as pollen donor. Figure S2. Scheme of generating inbred RdDM osd1 mutants and using them for crossing. Figure S3. Scheme of generating F2 and Fi nrpd1-3 plants. Figure S4. Distribution of DMR1spec and DMRi over genomic features. Figure S5. Similar expression pattern of deregulated genes in 3x seeds and the endosperm of 3x seeds. Figure S6. Screenshots showed DNA methylation in flanking or coding regions of selected ARFs and AGLs. Figure S7. Correlation between replicates of CHG and CHH fractional methylation levels on Chr1. Figure S8. Correlation between three replicates of H3K9me2 - H3 methylation levels on Chr1 in wt leaves.
Additional file 2 of Systematic pan-cancer landscape identifies CARM1 as a potential prognostic and immunological biomarker
Creators: name: Qiu, Yingqi
name: Wang, Hao
name: Liao, Peiyun
name: Xu, Binyan
name: Hu, Rong
name: Yang, Yulu
name: Li, Yuhua
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional files 2: Figure S2. The RNA and protein expression profile of CARM1 in various cancers and blood cells.
Subaru Deep Survey VI. A Census of Lyman Break Galaxies at z=4 and 5 in the Subaru Deep Fields: Clustering Properties
Creators: name: Ouchi, M.
name: Shimasaku, K.
name: Okamura, S.
name: Furusawa, H.
name: Kashikawa, N.
name: Ota, K.
name: Doi, M.
name: Hamabe, M.
name: Kimura, M.
name: Komiyama, Y.
name: Miyazaki, M.
name: Miyazaki, S.
name: Nakata, F.
name: Sekiguchi, M.
name: Yagi, M.
name: Yasuda, N.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We investigate the clustering properties of 2,600 Lyman Break Galaxies (LBGs) at z=3.5-5.2 in two large blank fields, the Subaru Deep Field and the Subaru/XMM Deep Field (600arcmin^2 each). The angular correlation functions of these LBGs show a clear clustering at both z~4 and 5. The correlation lengths are r_0= 4.1^{+0.2}_{-0.2} and 5.9^{+1.3}_{-1.7} h_{100}^{-1} Mpc (r_0= 5.1^{+1.0}_{-1.1} and 5.9^{+1.3}_{-1.7} h_{100}^{-1} Mpc) for all the detected LBGs (for L>L* LBGs) at z~4 and 5, respectively. These correlation lengths correspond to galaxy-dark matter biases of b_g= 2.9^{+0.1}_{-0.1} and 4.6^{+0.9}_{-1.2} (b_g=3.5^{+0.6}_{-0.7} and 4.6^{+0.9}_{-1.2}), for all the detected LBGs (for L>L^* LBGs) at z~4 and 5, respectively. These results, combined with estimates for z~3 LBGs in the literature, show that the correlation length of L>L^* LBGs is almost constant, ~5 h_{100}^{-1} Mpc, over z~3-5, while the bias monotonically increases with redshift at z>3. We also find that for LBGs at z~4 the clustering amplitude increases with UV-continuum luminosity and with the amount of dust extinction. We estimate the mass of dark halos hosting various kinds of high-z galaxies including LBGs with the analytic model given by Sheth & Tormen (1999). We find that the typical mass of dark halos hosting L>L^* LBGs is about 1x10^{12} h_{70}^{-1}Msol over z~3-5, which is comparable to that of the Milky Way Galaxy. A single dark halo with ~10^{12} h_{70}^{-1} Msol is found to host 0.1-0.3 LBG on average but host about four K-band selected galaxies.
description: 33 pages, 12 figures, ApJ in press. Paper with high resolution figures is available at http://hikari.astron.s.u-tokyo.ac.jp/~ouchi/work/astroph/SDS_V_VI/SDS_VI.pdf (PDF) (The abstract was reduced by the revision.)
A Two-Dimensional Hydrostatically Equilibrium Atmosphere of a Neutron Star with Given Differential Rotation
Creators: name: Imshennik, V. S.
name: Manukovskii, K. V.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: An analytic solution has been found in the Roche approximation for the axially symmetric structure of a hydrostatically equilibrium atmosphere of a neutron star produced by collapse. A hydrodynamic (quasione-dimensional) model for the collapse of a rotating iron core in a massive star gives rise to a heterogeneous rotating protoneutron star with an extended atmosphere composed of matter from the outer part of the iron core with differential rotation (Imshennik and Nadyozhin, 1992). The equation of state of a completely degenerate iron gas with an arbitrary degree of relativity is taken for the atmospheric matter. We construct a family of toroidal model atmospheres with total masses $M \approx 0.1 ÷0.2 M_{\odot}$ and total angular momenta $J \approx (1 ÷5.5) \cdot 10^{49} erg \cdot s$, which are acceptable for the outer part of the collapsed iron core, in accordance with the hydrodynamic model, as a function of constant parameters $ω_{0} and r_{0}$ of the specified differential rotation law $Ω= ω_{0}\exp{\Big[-\frac{(r\sinΘ)^{2}}{r_{0}^{2}}\Big]}$ in spherical coordinates. The assumed rotation law is also qualitatively consistent with the hydrodynamic model for the collapse of an iron core.
description: 9 pages, 6 figures, 1 table
The local surface density of disc matter mapped by Hipparcos
Creators: name: Holmberg, Johan
name: Flynn, Chris
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We determine the surface density of matter in the disc of the Galaxy at the solar position using K giant stars. The local space density and luminosity function of the giants is determined using parallaxes from the Hipparcos satellite; for more distant giants, observed in a cone at the South Galactic Pole, distances are determined using intermediate band DDO photometry (which has been calibrated to the Hipparcos absolute magnitudes). From this sample, we determine the gravitational potential vertically of the local Galactic disc, by comparing the number of giant stars observed in the cone with the number expected for various models of the matter distribution in the disc. We derive an estimate of the dynamical disc mass surface density of 56 +/- 6 solar masses /pc^2, which may be compared to an estimate of 53 solar masses/pc^2 in visible matter. For all gravitating matter (disc + dark halo) we find the total density within 1.1 kpc of the disc midplane to be 74 +/- 6 solar masses/pc^2. As has been found by a number of studies, including our own, we find no compelling evidence for significant amounts of dark matter in the disc.
description: Accepted for publication in MNRAS, 8 pages, 11 figures
Gravitational Collapse of Null Radiation and a String fluid
Creators: name: Govinder, K S
name: Govender, M
Publisher: name: arXiv
Year: 2003
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We consider the end state of collapsing null radiation with a string fluid. It is shown that, if diffusive transport is assumed for the string, that a naked singularity can form (at least locally). The model has the advantage of not being asymptotically flat. We also analyse the case of a radiation-string two-fluid and show that a locally naked singularity can result in the collapse of such matter. We contrast this model with that of strange quark matter.
description: RevTeX 4.0 (8 pages - no figures). submitted to Phys Rev D. Some changes to abstract, introduction and conclusion - references updated
Alepocephalidae
Creators: name: Arai, Hisao P.
name: Smith, John W.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Osmeriformes
Alepocephalidae

description: Family Alepocephalidae
Alepocephalus agassizii Goode & Bean Agassiz’ Slickhead Anisakis sp.
description: Published as part of Arai, Hisao P. & Smith, John W., 2016, Guide to the Parasites of Fishes of Canada Part V: Nematoda, pp. 1-274 in Zootaxa 4185 (1) on page 190, DOI: 10.11646/zootaxa.4185.1.1, http://zenodo.org/record/165530
Gravitational Wave Perturbations on a Kerr Background and Applications for Echoes
Creators: name: Conklin, Randy S.
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Gravitational wave echoes may imply physics beyond general relativity; however, several approaches to searching for echoes require fitting the data to toy templates which are not physically motivated. Here, I create a procedure which outputs a more realistic form for echoes, starting from initial conditions, by calculating the modulated transfer function.
description: 16+1 pages, 9 figures
Quadrupole-scissors modes and nonlinear mode coupling in trapped two-component Bose-Einstein condensates
Creators: name: Kasamatsu, Kenichi
name: Tsubota, Makoto
name: Ueda, Masahito
Publisher: name: arXiv
Year: 2003
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: We theoretically investigate quadrupolar collective excitations in two-component Bose-Einstein condensates and their nonlinear dynamics associated with harmonic generation and mode coupling. Under the Thomas-Fermi approximation and the quadratic polynomial ansatz for density fluctuations, the linear analysis of the superfluid hydrodynamic equations predicts excitation frequencies of three normal modes constituted from monopole and quadrupole oscillations, and those of three scissors modes. We obtain analytically the resonance conditions for the second harmonic generation in terms of the trap aspect ratio and the strength of intercomponent interaction. The numerical simulation of the coupled Gross-Pitaevskii equations vindicates the validity of the analytical results and reveals the dynamics of the second harmonic generation and nonlinear mode coupling that lead to nonlinear oscillations of the condensate with damping and recurrence reminiscent of the Fermi-Pasta-Ulam problem.
description: 10 pages, 5 figures, revtex4
Roughness-induced friction in liquid foams
Creators: name: Marchand, Manon
name: Restagno, Frédéric
name: Rio, Emmanuelle
name: Boulogne, François
Publisher: name: arXiv
Year: 2020
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: Complex liquids flow is known to be drastically affected by the roughness condition at the interfaces. We combined stresses measurements and observations of the flow during the motion of different rough surfaces in dry liquid foams. We visually show that three distinct friction regimes exists: slippage, stick-slip motion, and anchored soap films. Our stress measurements are validated for slippage and anchored regimes based on existing models, and we propose a leverage rule to describe the stresses during the stick-slip regime. We find that the occurrence of the stick-slip or anchored regimes is controlled by the roughness factor, defined as the ratio between the size of the surface asperities and the radius of curvature of the Plateau borders.
description: 12 pages, Supplemental information included
Chonocephalus longicornis Disney 2008, sp. nov.
Creators: name: Disney, R. H. L.
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Phoridae
Chonocephalus
Chonocephalus longicornis

description: Chonocephalus longicornis sp. nov.
(Figs 82–87)
The name refers to the exceptionally long aristae of the female.
Male. Postpedicel longer than its greatest breadth. Left and right sides of epandrium as Figs 82 and 83; left gonopod and lobe of hypandrium as Fig. 84; right lobe as Fig. 85. Wing 1.2–1.3 mm long. Costal index 0.51–0.52. Vein 3 with a terminal vesicle which extends beyond tip of costa. All tibiae are brown.
Female. Length about 1 mm. Thorax and abdominal tergites uniformly dark brown contrasting with the almost colourless frons. Aristae at least 0.5 mm long. Sternite 8 and spermatheca as Fig. 86 and furca as Fig. 87. Front tibia and distal halves of mid and hind tibiae whitish yellow. Hind tarsus with a ventral hair palisade on segments 1–3.
 Material. Holotype male, Costa Rica, Puntarenas, Las Cruces Biological Station, 8.80 o N, 82.97 o W, 1200 m, Malaise trap, 14–19 November 2005, G. Kung & A. Kreuter (CUMZ, 26-77). Paratype, 1 female, caught in copula with holotype (CUMZ); 3 males, as holotype except 7–17 November 2005 (CUMZ, LACM, 26-79); 1 male, Puntarenas, Las Alturas, 8.95 o N, 82.83 o W, 1500 m, Malaise trap, 12–14 November 2005 (CUMZ, 26- 78).
description: Published as part of Disney, R. H. L., 2008, Review of Neotropical Chonocephalus Wandolleck (Diptera: Phoridae), pp. 1-54 in Zootaxa 1772 (1) on pages 27-28, DOI: 10.11646/zootaxa.1772.1.1, http://zenodo.org/record/5123977
Additional file 5 of Predicting the allergenicity of legume proteins using a PBMC gene expression assay
Creators: name: Smits, Mark
name: Meijerink, Marjolein
name: Thuy-My Le
name: Knulst, André
name: De Jong, Aard
name: Caspers, Martinus Petrus Maria
name: Everton Souto Lima
name: Babé, Lilia
name: Ladics, Gregory
name: McClain, Scott
name: Houben, Geert
name: Verhoeckx, Kitty
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Plant Biology

description: Additional file 5: Figure 1. The immunological roles of CCL2, CCL7 and RASD2 in mast cell activation and food allergy. Figure explaining the immunological roles of CCL2, CCL7 and RASD2 in mast cell activation and food allergy.
title: Seine et Marne Hugues 1907
Creators: name: Costa, L.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2019

description: Carte des grandes routes de Seine et Marne au XVIIIe siècle. Dressé d'après les itinéraires anciens et les archives des Ponts-et-Chaussées.
Memory in nonmonotonic stress relaxation of a granular system
Creators: name: Murphy, Kieran A.
name: Kruppe, Jonathon W.
name: Jaeger, Heinrich M.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We demonstrate experimentally that a granular packing of glass spheres is capable of storing memory of multiple strain states in the dynamic process of stress relaxation. Modeling the system as a non-interacting population of relaxing elements, we find that the functional form of the predicted relaxation requires a quantitative correction which grows in severity with each additional memory and is suggestive of interactions between elements. Our findings have implications for the broad class of soft matter systems that display memory and anomalous relaxation.
description: 5 pages, 5 figures
Universal declaration of interdependence from From inert matter to the global society Life as multi-level networks of processes
Creators: name: Chavalarias, David
Publisher: name: The Royal Society
Year: 2020
Subjects: subject: Cell Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 60102 Bioinformatics
subject: FOS: Computer and information sciences
subject: 60114 Systems Biology
subject: 170299 Cognitive Science not elsewhere classified
subject: FOS: Psychology
subject: 10202 Biological Mathematics
subject: FOS: Mathematics

description: Document proposed to the United Nations for its 60th anniversary by a group of dozens of famous scientists and policymakers that highlights the new state of interdependencies between all human civilizations.
Additional file 1 of Multi-domain cognitive impairments at school age in very preterm-born children compared to term-born peers
Creators: name: Roze, Elise
name: Sijmen A. Reijneveld
name: Stewart, Roy E.
name: Bos, Arend F.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Neuroscience
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Table S1. Patient characteristics.
Numerical modelling of the quantum-tail effect on fusion rates at low energy
Creators: name: Coraddu, M.
name: Mezzorani, G.
name: Petrushevich, Yu. V.
name: Quarati, P.
name: Starostin, A. N.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Results of numerical simulations of fusion rate d(d,p)t, for low-energy deuteron beam, colliding with deuterated metallic matrix (Raiola et al. Phys. Lett.B 547 (2002) 193 and Eur. Phys J. A 13 (2002) 377) confirm analytical estimate given in Coraddu et al. nucl-th/0401043, taking into account quantum tails in the momentum distribution function of target particles, and predict an enhanced astrophysical factor in the 1 keV region in qualitative agreement with experiments.
description: 6 pages, without figures
Convolutional Neural Networks as a Model of the Visual System: Past, Present, and Future
Creators: name: Lindsay, Grace W.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Neurons and Cognition (q-bio.NC)
subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Neural and Evolutionary Computing (cs.NE)
subject: FOS: Biological sciences
subject: FOS: Computer and information sciences

description: Convolutional neural networks (CNNs) were inspired by early findings in the study of biological vision. They have since become successful tools in computer vision and state-of-the-art models of both neural activity and behavior on visual tasks. This review highlights what, in the context of CNNs, it means to be a good model in computational neuroscience and the various ways models can provide insight. Specifically, it covers the origins of CNNs and the methods by which we validate them as models of biological vision. It then goes on to elaborate on what we can learn about biological vision by understanding and experimenting on CNNs and discusses emerging opportunities for the use of CNNS in vision research beyond basic object recognition.
description: Review Article to be published in Journal of Cognitive Neuroscience, 18 pages, 5 figures plus 8 pages of references
Additional file 5 of Whole-genome methylation analysis reveals epigenetic variation between wild-type and nontransgenic cloned, ASMT transgenic cloned dairy goats generated by the somatic cell nuclear transfer
Creators: name: Wu, Hao
name: Zhou, Wendi
name: Liu, Haijun
name: Cui, Xudai
name: Ma, Wenkui
name: Wu, Haixin
name: Li, Guangdong
name: Wang, Likai
name: Zhang, Jinlong
name: Zhang, Xiaosheng
name: Ji, Pengyun
name: Lian, Zhengxing
name: Liu, Guoshi
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 5: Fig. S5. mCpG bits cover the depth distribution frequency map (A, ASMT transgenic cloned goat (K2020); B, control goat (S2); C, Nontransgenic cloned goat (K03)).
Esocidae
Creators: name: Arai, Hisao P.
name: Smith, John W.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Esociformes
Esocidae

description: Family Esocidae
Esox americanus americanus Gmelin Redfin Pickerel Cystidicola farionis
Esox americanus vermiculatus Lesueur Grass Pickerel Cucullanellus cotylophora
Spinitectus gracilis
Esox lucius Linnaeus Northern Pike Camallanus oxycephalus Camallanus sp.
Contracaecum sp.
Cystidicola sp.
Hysterothylacium brachyurum Nematoda gen. sp.
Philonema sp.
Raphidascaris acus
Raphidascaris sp.
Rhabdochona canadensis Spinitectus carolini
Spinitectus gracilis
Esox masquinongy Mitchill Muskellunge Hysterothylacium brachyurum
Raphidascaris acus
Salmonema ephemeridarum
Esox niger Lesueur Chain Pickerel Philometra sp.
Umbra limi (Kirtland) Central Mudminnow Raphidascaris acus
Spiroxys sp.
description: Published as part of Arai, Hisao P. & Smith, John W., 2016, Guide to the Parasites of Fishes of Canada Part V: Nematoda, pp. 1-274 in Zootaxa 4185 (1) on page 197, DOI: 10.11646/zootaxa.4185.1.1, http://zenodo.org/record/165530
Finding cool subdwarfs using a V-J reduced proper-motion diagram: Stellar parameters for 91 candidates
Creators: name: Yong, David
name: Lambert, David L.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present the results of a search for cool subdwarfs for which our candidates were drawn from a V-J reduced proper-motion diagram constructed by Salim & Gould (2002). Kinematic (U, V, and W) and self-consistent stellar parameters (Teff, log g, [Fe/H], and V_t) are derived for 91 candidate subdwarfs based on high resolution spectra. The observed stars span 3900K < Teff < 6200K and -2.63 < [Fe/H] < 0.25 including only 3 giants (log g < 4.0). Of the sample, 77 stars have MgH lines present in their spectra. With more than 56% of our candidate subdwarfs having [Fe/H] < -1.5, we show that the V-J reduced proper-motion diagram readily identifies metal-poor stars.
description: PASP (in press)
Quantum Computing at the Frontiers of Biological Sciences
Creators: name: Emani, Prashant S.
name: Warrell, Jonathan
name: Anticevic, Alan
name: Bekiranov, Stefan
name: Gandal, Michael
name: McConnell, Michael J.
name: Sapiro, Guillermo
name: Aspuru-Guzik, Alán
name: Baker, Justin
name: Bastiani, Matteo
name: McClure, Patrick
name: Murray, John
name: Sotiropoulos, Stamatios N
name: Taylor, Jacob
name: Senthil, Geetha
name: Lehner, Thomas
name: Gerstein, Mark B.
name: Harrow, Aram W.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: Genomics (q-bio.GN)
subject: Neurons and Cognition (q-bio.NC)
subject: Quantitative Methods (q-bio.QM)
subject: FOS: Physical sciences
subject: FOS: Biological sciences

description: The search for meaningful structure in biological data has relied on cutting-edge advances in computational technology and data science methods. However, challenges arise as we push the limits of scale and complexity in biological problems. Innovation in massively parallel, classical computing hardware and algorithms continues to address many of these challenges, but there is a need to simultaneously consider new paradigms to circumvent current barriers to processing speed. Accordingly, we articulate a view towards quantum computation and quantum information science, where algorithms have demonstrated potential polynomial and exponential computational speedups in certain applications, such as machine learning. The maturation of the field of quantum computing, in hardware and algorithm development, also coincides with the growth of several collaborative efforts to address questions across length and time scales, and scientific disciplines. We use this coincidence to explore the potential for quantum computing to aid in one such endeavor: the merging of insights from genetics, genomics, neuroimaging and behavioral phenotyping. By examining joint opportunities for computational innovation across fields, we highlight the need for a common language between biological data analysis and quantum computing. Ultimately, we consider current and future prospects for the employment of quantum computing algorithms in the biological sciences.
description: 22 pages, 3 figures, Perspective
title: Frau Dr. Marie Heim-Vögtlin [1845-1916]
title: die erste schweizerische Ärztin
titleType: Subtitle
Creators: name: Sch., J.
Publisher: name: Schweizerischer Gemeinnütziger Frauenverein
Year: 1916
Subjects: subject: 920 Biografien, Genealogie, Insignien
subject: Nachruf
subject: Heim-Vögtlin, Marie

description: In: Zentralblatt des Schweizerischen Gemeinnützigen Frauenvereins, Jg. 4, Nr. 11, S. 270-276
Neutrino masses in an $SU(4)\times U(1)$ -- electroweak model with a scalar decuplet
Creators: name: Ky, N. Anh
name: Van, N. T. Hong
name: Dinh, D. Nguyen
name: Van, P. Quang
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: A neutrino mass model is suggested within an $SU(4)\times U(1)$ -- electroweak theory. The smallness of neutrino masses can be guaranteed by a seesaw mechanism realized through Yukawa couplings to a scalar $SU(4)$-decuplet. In this scheme the light active neutrinos are accompanied by heavy neutrinos, which may have masses at different scales, including those within eV-MeV scales investigated quite intensively in both particle physics and astrophysics/cosmology. The flavour neutrinos are superpositions of light neutrinos and a small fraction of heavy neutrinos with the mixing to be determined by the model's parameters (Yukawa coupling coefficients or symmetry breaking scales). The distribution shape of the Yukawa couplings can be visualized via a model-independent distribution of the neutrino mass matrix elements derived by using the current experimental data. With reference to several current and near future experiments, detectable bounds of these heavy neutrinos at different mass scales are discussed and estimated.
description: LaTeX 9 pages, 15 figures
Evolving Maximally Symmetric Spacetime Bubbles from Spontaneous Z_2-Violation at Electroweak Symmetry Breaking Scale
Creators: name: Dariescu, Ciprian
Publisher: name: arXiv
Year: 2003
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: The Einstein-Gordon equations for Friedmann-Robertson-Walker (FRW) geometries in feedback reaction with the quartically self-interacting physical field, arisen from the "inner parity" spontaneous breaking, are explicitly formulated. The Hamiltonian density non-positive extrema would classically forbid both spatially closed and flat homogeneous and isotropic worlds if these were to allow the physical field to (repeatedly) go through and to (finally) settle down in a ground state. In this respect, the fixed point exact solutions of the spontaneous Z_2-symmetry breaking Einstein-Gordon equations (mandatory) describe (k=-1)-FRW manifolds which actually are either Milne or anti-de Sitter Universes. Setting the Z_2-invariance breaking scale at the one of the electroweak symmetry, we speculate on the cosmological implications of the Higgs-anti-de Sitter bubbles and derive a set of particular closed-form solutions to the S_2-cobordism with a spatially flat FRW Universe.
description: 43 pages LaTeX, no figures