cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 4: of Dynamic linear models guide design and analysis of microbiota studies within artificial human guts
Creators: name: Silverman, Justin
name: Durand, Heather
name: Bloom, Rachael
name: Sayan Mukherjee
name: David, Lawrence
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Inorganic Chemistry
subject: Science Policy

description: Samples were collected over a one month period with both daily and hourly sampling intervals. Daily samples were collected at 15:00 ± 00:30 h, hourly samples were collected within ± 10 min of depicted time. Samples that were either not collected or filtered from analysis due to low sequencing depth are shown in white, samples that were included in analyses are shown in blue. Samples from days 5, 6, and 13 were not collected due to holiday. In addition to standard hourly and daily longitudinal sampling, 20 samples were collected from the final time-point of each replicate vessel. The number of replicate samples that were included in the analysis are depicted in blue. (PDF 30 kb)
A manifestly N=2 supersymmetric Born-Infeld action
Creators: name: Ketov, Sergei V.
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: A manifestly N=2 supersymmetric completion of the four-dimensional Nambu-Goto-Born-Infeld action, which is self-dual with respect to electric-magnetic duality, is constructed in terms of the abelian N=2 superfield strength W in the conventional N=2 superspace. A relation to the known N=1 supersymmetric Born-Infeld action in N=1 superspace is established. The action found can be considered either as the Goldstone action associated with partial breaking of N=4 supersymmetry down to N=2, with the N=2 vector superfield being a Goldstone field, or, equivalently, as the gauge-fixed superfield action of a D-3-brane in flat six-dimensional ambient spacetime.
description: 11 pages, LaTeX, eq.(42) is corrected
Dactylopterus volitans
Creators: name: Nurettin Meriç
name: Lütfiye Eryilmaz
name: Müfit Özulug
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Scorpaeniformes
Dactylopteridae
Dactylopterus
Dactylopterus volitans

description: Dactylopterus volitans (Linnaeus, 1758)
Mediterranean Sea: 10500-199 (2 spa), 02.04.1962, Iskenderun Bay, M. Demir; 10500-533 (1 spc.), Iskenderun Bay, M. Demir; 10500-192 (1 spa), 02.04.1962, Iskenderun Bay, M. Demir.
description: Published as part of Nurettin Meriç, Lütfiye Eryilmaz & Müfit Özulug, 2007, A catalogue of the fishes held in the Istanbul University, Science Faculty, Hydrobiology Museum., pp. 29-54 in Zootaxa 1472 on page 29
BeppoSAX observation of the X-ray binary pulsar Vela X-1
Creators: name: Orlandini, M.
name: Fiume, D. Dal
name: Nicastro, L.
name: Giarrusso, S.
name: Segreto, A.
name: Piraino, S.
name: Cusumano, G.
name: Del Sordo, S.
name: Guainazzi, M.
name: Piro, L.
Publisher: name: arXiv
Year: 1997
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We report on the spectral (pulse averaged) and timing analysis of the ~ 20 ksec observation of the X-ray binary pulsar Vela X-1 performed during the BeppoSAX Science Verification Phase. The source was observed in two different intensity states: the low state is probably due to an erratic intensity dip and shows a decrease of a factor ~ 2 in intensity, and a factor 10 in Nh. We have not been able to fit the 2-100 keV continuum spectrum with the standard (for an X--ray pulsar) power law modified by a high energy cutoff because of the flattening of the spectrum in ~ 10-30 keV. The timing analysis confirms previous results: the pulse profile changes from a five-peak structure for energies less than 15 keV, to a simpler two-peak shape at higher energies. The Fourier analysis shows a very complex harmonic component: up to 23 harmonics are clearly visible in the power spectrum, with a dominant first harmonic for low energy data, and a second one as the more prominent for energies greater than 15 keV. The aperiodic component in the Vela X-1 power spectrum presents a knee at about 1 Hz. The pulse period, corrected for binary motion, is 283.206 +/- 0.001 sec.
description: 5 pages, 4 PostScript figure, uses aipproc.sty, to appear in Proceedings of Fourth Compton Symposium
Additional file 3: of Dynamic linear models guide design and analysis of microbiota studies within artificial human guts
Creators: name: Silverman, Justin
name: Durand, Heather
name: Bloom, Rachael
name: Sayan Mukherjee
name: David, Lawrence
Publisher: name: figshare
Year: 2018
Subjects: subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Inorganic Chemistry
subject: Science Policy

description: Proportions of most abundant bacterial families estimated from count data during hourly sampling period. Proportions were estimated by dividing observed counts by the total number of counts observed for each sample. The time-point corresponding to B. ovatus supplementation is depicted as a black line. (PDF 37 kb)
Helicolenus dactylopterus
Creators: name: Nurettin Meriç
name: Lütfiye Eryilmaz
name: Müfit Özulug
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Scorpaeniformes
Sebastidae
Helicolenus
Helicolenus dactylopterus

description: Helicolenus dactylopterus (Delaroche, 1809)
Sea of Marmara: 10600-211 (1 spc.), 08.06.1991, Offshore of Mimarsinan, trammel net, 162 m, N. Meriç, L. Eryilmaz; 10600-536 (1 spc), 09.04.1988, Offshore of Mimarsinan, N. Meriç; 10600-204 (1 spc.), 16.06.1991, Offshore of Mimarsinan, 175 m, N. Meriç. Mediterranean Sea: 10600-791 (3 spc.), January 2003, Iskenderun Bay, trawl, C. Dalyan.
description: Published as part of Nurettin Meriç, Lütfiye Eryilmaz & Müfit Özulug, 2007, A catalogue of the fishes held in the Istanbul University, Science Faculty, Hydrobiology Museum., pp. 29-54 in Zootaxa 1472 on page 29
Resolving ambiguities in the neutrino mass-flavour spectrum from supernova neutrinos
Creators: name: Dighe, Amol S.
Publisher: name: arXiv
Year: 1999
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We analyze the neutrino conversions inside a supernova in the 3$ν$ mixing scheme, and their effects on the neutrino spectra observed at the earth. We find that the observations of the energy spectra of neutrinos from a future galactic supernova may enable us to identify the solar neutrino solution, to determine the sign of $Δm^2_{32}$, and to probe the mixing matrix element |U_{e3}|^2 to values as low as 10^{-4}-10^{-3}.
description: 3 pages, 1 eps figure. Talk given at TAUP-99. To be published in Nucl. Phys. B, Proc. Suppl
A census of galaxy constituents in a Coma Progenitor observed at z>3
Creators: name: Shi, Ke
name: Lee, Kyoung-Soo
name: Dey, Arjun
name: Huang, Yun
name: Malavasi, Nicola
name: Hung, Chao-Ling
name: Inami, Hanae
name: Ashby, Matthew
name: Duncan, Kenneth
name: Xue, Rui
name: Reddy, Naveen
name: Hong, Sungryong
name: Jannuzi, Buell T.
name: Cooper, Michael C.
name: Gonzalez, Anthony H.
name: Röttgering, Huub J. A.
name: Best, Phillip N.
name: Tasse, Cyril
Publisher: name: arXiv
Year: 2018
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We present a detailed census of galaxies in and around PC217.96+32.3, a spectroscopically confirmed Coma analog at z=3.78. Diverse galaxy types identified in the field include Lya emitters (LAEs), massive star-forming galaxies, and ultra-massive galaxies (log (Mstar/Msun)>= 11) which may have already halted their star formation. The sky distribution of the star-forming galaxies suggests the presence of a significant overdensity (delta_g=8+/-2), which is spatially offset from the previously confirmed members by 3-4 Mpc to the west. Candidate quiescent and post-starburst galaxies are also found in large excess (a factor of ~ 8-15 higher surface density than the field) although their redshifts are less certain. We estimate that the total enclosed mass traced by star-forming galaxy candidates is roughly comparable to that of PC217.96+32.3 traced by the LAEs. We speculate that the true extent of PC217.96+32.3 may be larger than previously known, a half of which is missed by our LAE selection. Alternatively, the newly discovered overdensity may belong to another Coma progenitor not associated with PC217.96+32.3. Expectations from theory suggest that both scenarios are equally unlikely (<1%), particularly in the cosmic volume probed in our survey. If confirmed as a single structure, its total mass will be well in excess of Coma, making this a singularly large cosmic structure rarely seen even in large cosmological simulations. Finally, we find that the protocluster galaxies follow the same SFR-M_star scaling relation as the field galaxies, suggesting that the environmental effect at z~4 is a subtle one at best for normal star-forming galaxies.
description: 21 pages, 11 figures, accepted for publication in Astrophysical Journal
Additional file 4 of The circular RNA circCPE regulates myoblast development by sponging miR-138
Creators: name: Ru, Wenxiu
name: Qi, Ao
name: Shen, Xuemei
name: Yue, Binglin
name: Zhang, Xiaoyan
name: Wang, Jian
name: Cao, Hui
name: Chen, Hong
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Additional file 4 Fig. S4. The conservation analysis of circCPE and miR-138. (A) The sequence alignment of circCPE between mice and bovine. (B) Conservation analysis of miR-138 among different species
title: ADCO, Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Cart. 32 (G 136), 745 folios, f. 0789
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Archives départementales de la Côte-d'Or, Cart. 32 (G 136), 745 folios, f. 0789, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Archives départementales de la Côte-d'Or, Cart. 32 (G 136), 745 folios, f. 0789, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
Diffractive $ϕ$ Production in a Perturbative QCD Model
Creators: name: Alam, J.
name: Hayashigaki, A.
name: Suzuki, K.
name: Hatsuda, T.
Publisher: name: arXiv
Year: 2000
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The elastic leptoproduction of $ϕ$ measured by the H1 collaboration at HERA is described by a perturbative QCD model, based on open $s\bar{s}$ production and parton hadron duality, proposed by Martin et al. We observe that both the total cross section and the ratio of the longitudinal and transverse cross sections are well reproduced with an effective strange-quark mass $m_s \sim 320- 380 $ MeV for various gluon distribution functions. Possible connection of the effective mass and the momentum dependent dynamical mass associated with dynamical breaking of chiral symmetry is also discussed.
description: Text revised, one figure added
Spectroscopic evidence for temperature-dependent convergence of light and heavy hole valence bands of PbQ (Q=Te, Se, S)
Creators: name: Zhao, J.
name: Malliakas, C. D.
name: Wijayaratne, K.
name: Karlapati, V.
name: Appathurai, N.
name: Chung, D. Y.
name: Rosenkranz, S.
name: Kanatzidis, M. G.
name: Chatterjee, U.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We have conducted temperature dependent Angle Resolved Photoemission Spectroscopy (ARPES) study of the electronic structures of PbTe, PbSe and PbS. Our ARPES data provide direct evidence for the \emph{light} hole upper valence bands (UVBs) and hitherto undetected \emph{heavy} hole lower valence bands (LVBs) in these materials. An unusual temperature dependent relative movement between these bands leads to a monotonic decrease in the energy separation between their maxima with increasing temperature, which is referred as band convergence and has long been believed to be the driving factor behind extraordinary thermoelectric performances of these compounds at elevated temperatures.
description: 6 pages, 4 figures. arXiv admin note: text overlap with arXiv:1404.1807
Scorpaena elongata Cadenat 1943
Creators: name: Nurettin Meriç
name: Lütfiye Eryilmaz
name: Müfit Özulug
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Scorpaeniformes
Scorpaenidae
Scorpaena
Scorpaena elongata

description: Scorpaena elongata Cadenat, 1943
Mediterranean Sea: 10700-792 (1 spc.), February 2003, Iskenderun Bay, trawl, C. Dalyan. Istanbul Fish Market: 10700-203 (1 spa), 20.02.1992.
description: Published as part of Nurettin Meriç, Lütfiye Eryilmaz & Müfit Özulug, 2007, A catalogue of the fishes held in the Istanbul University, Science Faculty, Hydrobiology Museum., pp. 29-54 in Zootaxa 1472 on page 29
On the p-adic denseness of the quotient set of a polynomial image
Creators: name: Miska, Piotr
name: Murru, Nadir
name: Sanna, Carlo
Publisher: name: arXiv
Year: 2018
Subjects: subject: Number Theory (math.NT)
subject: FOS: Mathematics
subject: 11B05 (Primary) 11B83 (Secondary)

description: The quotient set, or ratio set, of a set of integers $A$ is defined as $R(A) := \left\{a/b : a,b \in A,\; b \neq 0\right\}$. We consider the case in which $A$ is the image of $\mathbb{Z}^+$ under a polynomial $f \in \mathbb{Z}[X]$, and we give some conditions under which $R(A)$ is dense in $\mathbb{Q}_p$. Then, we apply these results to determine when $R(S_m^n)$ is dense in $\mathbb{Q}_p$, where $S_m^n$ is the set of numbers of the form $x_1^n + \cdots + x_m^n$, with $x_1, \dots, x_m \geq 0$ integers. This allows us to answer a question posed in [Garcia et al., $p$-adic quotient sets, Acta Arith. 179, 163-184]. We end leaving an open question.
Background Conditions Influence the Estimated Cloud Radiative Effects of Anthropogenic Aerosol Emissions from Different Source Regions
Creators: name: Grandey, Benjamin S.
name: Wang, Chien
Publisher: name: arXiv
Year: 2018
Subjects: subject: Atmospheric and Oceanic Physics (physics.ao-ph)
subject: FOS: Physical sciences

description: Using the Community Earth System Model, with the Community Atmosphere Model version 5.3, we investigate the cloud radiative effects of anthropogenic aerosols emitted from different source regions and global shipping. We also analyse aerosol burdens, cloud condensation nuclei concentration, liquid water path, and ice water path. Due to transboundary transport and sub-linearity in the response of clouds to aerosols, the cloud radiative effects of emissions from a given source region are influenced by emissions from other source regions. For example, the shortwave cloud radiative effect of shipping is $-0.39 \pm 0.03$ W m$^{-2}$ when other anthropogenic emissions sources are present (the `present-day background' assumption) compared with $-0.60 \pm 0.03$ W m$^{-2}$ when other anthropogenic emissions sources are absent (the `natural background' assumption). In general, the cloud radiative effects are weaker if present-day background conditions are assumed compared with if natural background conditions are assumed. Assumptions about background conditions should be carefully considered when investigating the climate impacts of aerosol emissions from a given source region.
description: Article: 33 pages, including 11 figures. Supporting Information: 21 pages, including 21 figures
Additional file 1: of Intra-patient and inter-patient comparisons of DNA damage response biomarkers in Nasopharynx Cancer (NPC): analysis of NCC0901 randomised controlled trial of induction chemotherapy in locally advanced NPC
Creators: name: Chua, Kevin
name: Yeo, Eugenia
name: Shihabudeen, Waseem
name: Sze Tan
name: Shwe, Than
name: Enya Ong
name: Lam, Paula
name: Khee Soo
name: Yoke Soong
name: Fong, Kam
name: Tan, Terence
name: Wee, Joseph
name: Chua, Melvin
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified

description: Supplementary Methods. Selection of “best cases and controls” for subset analysis correlating assay readouts with severe late xerostomia. Table S1. Intraclass correlation coefficient (ICC) for additional sensitivity analysis of FLICA measurements. The single measurement and average of 3 measurements columns reports the ICC when either one or three tests were performed, respectively. Table S2. Summary of inter-patient heterogeneity in apoptotic and DNA damage responses. Table S3. Clinical and dosimetric characteristics of the 17 patients included in the sub-group exploratory analysis correlating assay readouts with severe late xerostomia using a “best case-control” design. Figure S1. Gating of (A) general lymphocyte population and (B) CD4+ or CD8+ lymphocyte sub-populations for FLICA apoptosis analysis by flow cytometry. Figure S2. Bland-Altman plots for (A) FLICA assay, and (B) γH2AX for the general lymphocyte population, as well as plots for FLICA assays of the (C) CD4+ and (D) CD8+ T lymphocyte subset populations. From Bland-Altman plots, outliers were identified and excluded from subsequent sensitivity analyses. Figure S3. Correlation between background %FLICA and %FLICA post-8 Gy for the (A) CD4 and (B) CD8 T-lymphocyte subsets. Solid lines were generated by linear regression; R values were generated by Spearman correlation test. Figure S4. Apoptotic responses post-8Gy in the CD4 and CD8 T-lymphocyte subsets were correlated for the same patient. Solid lines were generated by linear regression; R values were generated by Spearman correlation test. Figure S5. Sub-group exploratory analysis comparing residual γH2AX 4 Gy 24 h foci count between best cases (N = 9) and controls (N = 8). (PDF 5363 kb)
Universality class of a displacive structural phase transition in two dimensions
Creators: name: Vink, Richard L. C.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: The displacive structural phase transition in a two-dimensional model solid due to Benassi and co-workers [PRL 106, 256102 (2011)] is analyzed using Monte Carlo simulations and finite-size scaling. The model is shown to be a member of the two-dimensional six-state clock model universality class. Consequently, the model features two phase transitions, implying the existence of three thermodynamically distinct phases, namely, a low-temperature phase with long-ranged order, an intermediate critical phase with power-law decay of correlations, and a high-temperature phase with short-ranged order.
description: 7 pages, 8 figures
Constraining the Mass Distribution of Cluster Galaxies by Weak Lensing
Creators: name: Geiger, Bernhard
name: Schneider, Peter
Publisher: name: arXiv
Year: 1997
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Analysing the weak lensing distortions of the images of faint background galaxies provides a means to constrain the average mass distribution of cluster galaxies and potentially to test the extent of their dark matter haloes as a function of the density of their environment. The observable image distortions are a consequence of the interplay between the effects of a global cluster mass distribution and the perturbations due to individual cluster galaxies. Starting from a reconstruction of the cluster mass distribution with conventional techniques, we apply a maximum likelihood method to infer the average properties of an ensemble of cluster galaxies. From simulations this approach is found to be reliable as long as the galaxies including their dark matter haloes only contribute a small fraction to the total mass of the system. If their haloes are extended, the galaxies contain a substantial mass fraction. In this case our method is still applicable in the outer regions of clusters, where the surface mass density is low, but yields biased estimates of the parameters describing the mass profiles of the cluster galaxies in the central part of the cluster. In that case it will be necessary to resort to more sophisticated strategies by modelling cluster galaxies and an underlying global mass distribution simultaneously. We conclude that galaxy-galaxy lensing in clusters provides a unique means to probe the presence and extent of dark haloes of cluster galaxies.
description: 15 pages, submitted to MNRAS, a version including two additional figures is available at http://www.mpa-garching.mpg.de/Lenses/Preprints/ClusGala.ps.gz
Additional file 1: of The influence of STEM definitions for research on womenâ s college attainment
Creators: name: Manly, Catherine
name: Wells, Ryan
name: Kommers, Suzan
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: Additional methodological details. (DOCX 75 kb)
High Energy Cosmic Tau Neutrinos
Creators: name: Husain, Athar
Publisher: name: arXiv
Year: 1999
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: I discuss the possibility of production of high energy cosmic tau neutrinos ($E \geq 10^{6}$ GeV) in an astrophysical site and study some of the effects of neutrino mixing on their subsequent propagation. I also discuss the prospects for observations of these high energy cosmic tau neutrinos through double shower events in new km$^{2}$ surface area under water/ice neutrino telescopes.
description: 3 pages, Latex (uses espcrc2), 1 figure included with epsf, talk given at 6th International Workshop on Topics in Astroparticle and Underground Physics (TAUP 99), 6-10 September, Paris, France [to appear in its proceedings in Nucl. Phys. B (Proc. Suppl.) edited by M. Froissart, J. Dumarchez and D. Vignaud]
Additional file 5 of The circular RNA circCPE regulates myoblast development by sponging miR-138
Creators: name: Ru, Wenxiu
name: Qi, Ao
name: Shen, Xuemei
name: Yue, Binglin
name: Zhang, Xiaoyan
name: Wang, Jian
name: Cao, Hui
name: Chen, Hong
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Additional file 5.
Additional file 1: of Dynamic linear models guide design and analysis of microbiota studies within artificial human guts
Creators: name: Silverman, Justin
name: Durand, Heather
name: Bloom, Rachael
name: Sayan Mukherjee
name: David, Lawrence
Publisher: name: figshare
Year: 2018
Subjects: subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Inorganic Chemistry
subject: Science Policy
subject: Hematology

description: Model fits to the observed data. Posterior mean (red), 50% (dark blue) and 95% credible (light blue) intervals for Î¸t in terms of log transformed proportions (black). The raw count data are shown in black for comparison. A pseudo-count of 0.65 was added to the raw data prior to normalization and log-transformation to avoid taking the log of zero values. (PDF 163 kb)
Scorpaena maderensis Valenciennes 1833
Creators: name: Nurettin Meriç
name: Lütfiye Eryilmaz
name: Müfit Özulug
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Scorpaeniformes
Scorpaenidae
Scorpaena
Scorpaena maderensis

description: Scorpaena maderensis Valenciennes, 1833
Mediterranean Sea: 33200-890 (1 spc.), 02.07.2005, Olympos, Antalya, Evrim Tabur, C. Dalyan.
description: Published as part of Nurettin Meriç, Lütfiye Eryilmaz & Müfit Özulug, 2007, A catalogue of the fishes held in the Istanbul University, Science Faculty, Hydrobiology Museum., pp. 29-54 in Zootaxa 1472 on page 29
Directed Growth of Hydrogen Lines on Graphene: High Throughput Simulations Powered by Evolutionary Algorithm
Creators: name: Ozbal, G.
name: Falkenberg, J. T.
name: Brandbyge, M.
name: Senger, R. T.
name: Sevincli, H.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We set up an evolutionary algorithm combined with density functional tight-binding (DFTB) calculations to investigate hydrogen adsorption on flat graphene and graphene monolayers curved over substrate steps. During the evolution, candidates for the new generations are created by adsorption of an additional hydrogen atom to the stable configurations of the previous generation, where a mutation mechanism is also incorporated. Afterwards a two-stage selection procedure is employed. Selected candidates act as the parents of the next generation. In curved graphene, the evolution follows a similar path except for a new mechanism, which aligns hydrogen atoms on the line of minimum curvature. The mechanism is due to the increased chemical reactivity of graphene along the minimum radius of curvature line (MRCL) and to sp$^3$ bond angles being commensurate with the kinked geometry of hydrogenated graphene at the substrate edge. As a result, the reaction barrier is reduced considerably along the MRCL, and hydrogenation continues like a mechanical chain reaction. This growth mechanism enables lines of hydrogen atoms along the MRCL, which has the potential to overcome substrate or rippling effects and could make it possible to define edges or nanoribbons without actually cutting the material.
description: 10 pages of main text, 37 pages of supplementary information, 1 supplementary video
Scorpaena notata Rafinesque 1810
Creators: name: Nurettin Meriç
name: Lütfiye Eryilmaz
name: Müfit Özulug
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Scorpaeniformes
Scorpaenidae
Scorpaena
Scorpaena notata

description: Scorpaena notata Rafinesque, 1810
Aegean Sea: 10800-209 (10 spc.), 10.09.1963, Offshore of Altinkum, Çe, beam trawl, 20 m, M. Demir. Mediterranean Sea: 10800-744 (1 spc.), April 2004, Iskenderun Bay, trawl, 250 m, C. Dalyan. Istanbul Fish Market: 10800-208 (1 spc.), 16.03.1989; 10800-201 (1 spa), 16.03.1989.
description: Published as part of Nurettin Meriç, Lütfiye Eryilmaz & Müfit Özulug, 2007, A catalogue of the fishes held in the Istanbul University, Science Faculty, Hydrobiology Museum., pp. 29-54 in Zootaxa 1472 on page 29
Supermassive Hot Jupiters Provide More Favourable Conditions for the Generation of Radio Emission via the Cyclotron Maser Instability - A Case Study Based on Tau Bootis b
Creators: name: Weber, C.
name: Erkaev, N. V.
name: Ivanov, V. A.
name: Odert, P.
name: Grießmeier, J. -M.
name: Fossati, L.
name: Lammer, H.
name: Rucker, H. O.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: We investigate under which conditions supermassive hot Jupiters can sustain source regions for radio emission, and whether this emission could propagate to an observer outside the system. We study Tau Bootis b-like planets (a supermassive hot Jupiter with 5.84 Jupiter masses and 1.06 Jupiter radii), but located at different orbital distances (between its actual orbit of 0.046 AU and 0.2 AU). Due to the strong gravity of such planets and efficient radiative cooling, the upper atmosphere is (almost) hydrostatic and the exobase remains very close to the planet, which makes it a good candidate for radio observations. We expect similar conditions as for Jupiter, i.e. a region between the exobase and the magnetopause that is filled with a depleted plasma density compared with cases where the whole magnetosphere cavity is filled with hydrodynamically outward flowing ionospheric plasma. Thus, unlike classical hot Jupiters like the previously studied planets HD 209458b and HD 189733b, supermassive hot Jupiters should be in general better targets for radio observations.
Stabilization of Sub-Millimeter Dimensions: The New Guise of the Hierarchy Problem
Creators: name: Arkani-Hamed, Nima
name: Dimopoulos, Savas
name: March-Russell, John
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: A new framework for solving the hierarchy problem was recently proposed which does not rely on low energy supersymmetry or technicolor. The fundamental Planck mass is at a $\tev$ and the observed weakness of gravity at long distances is due the existence of new sub-millimeter spatial dimensions. In this picture the standard model fields are localized to a $(3+1)$-dimensional wall or ``3-brane''. The hierarchy problem becomes isomorphic to the problem of the largeness of the extra dimensions. This is in turn inextricably linked to the cosmological constant problem, suggesting the possibility of a common solution. The radii of the extra dimensions must be prevented from both expanding to too great a size, and collapsing to the fundamental Planck length $\tev^{-1}$. In this paper we propose a number of mechanisms addressing this question. We argue that a positive bulk cosmological constant $\barΛ$ can stabilize the internal manifold against expansion, and that the value of $\barΛ$ is not unstable to radiative corrections provided that the supersymmetries of string theory are broken by dynamics on our 3-brane. We further argue that the extra dimensions can be stabilized against collapse in a phenomenologically successful way by either of two methods: 1) Large, topologically conserved quantum numbers associated with higher-form bulk U(1) gauge fields, such as the naturally occurring Ramond-Ramond gauge fields, or the winding number of bulk scalar fields. 2) The brane-lattice-crystallization of a large number of 3-branes in the bulk. These mechanisms are consistent with theoretical, laboratory, and cosmological considerations such as the absence of large time variations in Newton's constant during and after primordial nucleosynthesis, and millimeter-scale tests of gravity.
description: Corrected referencing to important earlier work by Sundrum, errors fixed, additional discussion on radion phenomenology, conclusions unchanged, 23 pages, LaTeX
Relativistic parameterizations of neutron matter and implications for neutron stars
Creators: name: Hornick, Nadine
name: Tolos, Laura
name: Zacchi, Andreas
name: Christian, Jan-Erik
name: Schaffner-Bielich, Jürgen
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We construct parameter sets of the relativistic mean-field model fitted to the recent constraints on the asymmetry energy $J$ and the slope parameter $L$ for pure neutron matter. We find cases of unphysical behaviour, i.e.\ the appearance of negative pressures, for stiff parameter sets with low values of the effective mass $m^*/m$. In some cases the equation of state of pure neutron matter turns out to be outside the allowed band given by chiral effective field theory. The mass-radius relations of neutron stars for all acceptable parameter sets shows a maximum mass in excess of $2M_\odot$ being compatible with pulsar mass measurements. Given the constraints on the model in the low-density regime coming from chiral effective theory, we find that the radius of a $1.4M_\odot$ neutron star is nearly independent on the value of $L$. This is in contrast to some previous claims for a strong connection of the slope parameter with the radius of a neutron star. In fact, the mass-radius relation turns out to depend only on the isoscalar parameters of symmetric matter. The constraints of GW170817 on the tidal deformability and on the radius are also discussed.
description: 11 pages, 7 figures
Higher twist corrections to Bjorken sum rule
Creators: name: Anselmino, Mauro
name: Caruso, Francisco
name: Levin, Eugene
Publisher: name: arXiv
Year: 1995
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Some higher twist corrections to the Bjorken sum rule are estimated in the framework of a quark-diquark model of the nucleon. The parameters of the model have been previously fixed by fitting the measured higher twist corrections to the unpolarized structure function $F_2(x, Q^2)$. The resulting corrections to the Bjorken sum rule turn out to be negligible.
description: 7 pages, I Fig (ps file is available from levin@lafex.cbpf.br)
Can cosmic strangelets reach the earth?
Creators: name: Banerjee, Shibaji
name: Ghosh, Sanjay K.
name: Raha, Sibaji
name: Syam, Debapriyo
Publisher: name: arXiv
Year: 2000
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The mechanism for the propagation of strangelets with low baryon number through the atmosphere of the Earth has been explored. It has been shown that under suitable initial conditions, such strangelets may indeed reach depths near mountain altitudes with mass numbers and charges close to the observed values in cosmic ray experiments.
description: RevTeX text, with 3 encoded eps figures. To appear in Physical Review Letters
New radio observations of Circinus X-1
Creators: name: Fender, R. P.
Publisher: name: arXiv
Year: 1997
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: New radio observations of the radio-jet X-ray binary Circinus X-1 over nearly an entire 16.6-day orbit are presented. The source continues to undergo radio flaring in the phase interval 0.0 - 0.2 and appears to be brightening since observations in the early 1990s. The radio flux density is well correlated with simultaneous soft X-ray monitoring from the XTE ASM, including a secondary flare event around phases 0.6 --0.8 observed at both energies.
description: 5 pages, 2 figures. To appear in Proc. 4th Compton Symposium, AIP press
Additional file 2: of Determination of genetic associations between indels in 11 candidate genes and milk composition traits in Chinese Holstein population
Creators: name: Jiang, Jianping
name: Liu, Lin
name: Gao, Yahui
name: Shi, Lijun
name: Li, Yanhua
name: Liang, Weijun
name: Sun, Dongxiao
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified

description: Results of sanger and clone sequencing of the thirteen indels. (DOCX 332 kb)
title: ADCO, Premier cartulaire de Saint-Étienne de Dijon (XIIe siècle), Cart. 21 (G 125), 71 folios, f. 00096
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2015
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Premier cartulaire de Saint-Étienne de Dijon (XIIe siècle), Archives départementales de la Côte-d'Or, Cart. 21 (G 125), 71 folios, f. 00096, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Premier cartulaire de Saint-Étienne de Dijon (XIIe siècle), Archives départementales de la Côte-d'Or, Cart. 21 (G 125), 71 folios, f. 00096, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
Scorpaena porcus Linnaeus 1758
Creators: name: Nurettin Meriç
name: Lütfiye Eryilmaz
name: Müfit Özulug
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Scorpaeniformes
Scorpaenidae
Scorpaena
Scorpaena porcus

description: Scorpaena porcus Linnaeus, 1758
Black Sea: 10900-736 (3 spc.), 12.06.2005, Karaburun, trammel net, L. Eryilmaz. Sea of Marmara: 10900-207 (2 spc.), 24.10.1992, Eastern waters of Kapidag Peninsula, Offshore of Çayagz Small Bay, dredge, 13 m, L. Eryilmaz. Aegean Sea: 10900-206 (4 spc.), 02.02.1960, Gülbahçe Bay, Izmir. Mediterranean Sea: 10900-735 (1 spc.), January 2003, Iskenderun Bay, trawl, C. Dalyan. Istanbul Fish Market: 10900-200 (1 spc.), 16.03.1989; 10900-524 (1 spa), 16.03.1989.
description: Published as part of Nurettin Meriç, Lütfiye Eryilmaz & Müfit Özulug, 2007, A catalogue of the fishes held in the Istanbul University, Science Faculty, Hydrobiology Museum., pp. 29-54 in Zootaxa 1472 on page 29
Quantum computing with Bianchi groups
Creators: name: Planat, Michel
name: Aschheim, Raymond
name: Amaral, Marcelo M.
name: Irwin, Klee
Publisher: name: arXiv
Year: 2018
Subjects: subject: Geometric Topology (math.GT)
subject: Mathematical Physics (math-ph)
subject: Group Theory (math.GR)
subject: Number Theory (math.NT)
subject: Quantum Physics (quant-ph)
subject: FOS: Mathematics
subject: FOS: Physical sciences
subject: 81P68, 57M25, 57M27, 20K15, 57R65, 14H30, 20E05, 57M12

description: It has been shown that non-stabilizer eigenstates of permutation gates are appropriate for allowing $d$-dimensional universal quantum computing (uqc) based on minimal informationally complete POVMs. The relevant quantum gates may be built from subgroups of finite index of the modular group $Γ=PSL(2,\mathbb{Z})$ [M. Planat, Entropy 20, 16 (2018)] or more generally from subgroups of fundamental groups of $3$-manifolds [M. Planat, R. Aschheim, M.~M. Amaral and K. Irwin, arXiv 1802.04196(quant-ph)]. In this paper, previous work is encompassed by the use of torsion-free subgroups of Bianchi groups for deriving the quantum gate generators of uqc. A special role is played by a chain of Bianchi congruence $n$-cusped links starting with Thurston's link.
description: 10 pages, 14 figures, 3 tables a mistake occured in the fourth author name. arXiv admin note: text overlap with arXiv:1802.04196
THEIA-XR: Interaction Concepts (First Version) (D4.4)
Creators: name: Howard, Thomas
name: Lorenz, Sebastian
name: Waurich, Volker
name: Kulzer, Manuel
name: Brodbeck, Tanja
name: Makinen, Laura
name: Yli-Paunu, Pekka
name: Rooker, Martijn
name: Helin, Kaj
name: Alesani, Andrea
name: Arth, Clemens
name: Kernbauer, Thomas
name: Röck, Daniel
Publisher: name: Zenodo
Year: 2024

description: This deliverable presents the first set of results from task T4.4 “Multimodal interaction concepts and resulting requirements for XR-Technology and UI”. The goal of this task is to develop a general interaction model, wherein all the envisioned control and feedback functions relevant to each of the THEIA-XR use-cases can be described. Using this, we break down the interaction scenarios developed in task T3.2 into component control and feedback tasks, to specify concrete implementations of these functions to be tested in the project. By iteratively refining these implementations based on input from the co-design process as well as insights gleaned during the implementation process, we will converge towards a set of functional and relevant novel interactions to be showcased through immersive playable demonstrations. The present document aims to provide a first draft of a specification for these demonstrations.
Additional file 5: of Aberrantly expressed miR-188-5p promotes gastric cancer metastasis by activating Wnt/Î˛-catenin signaling
Creators: name: Li, Yun
name: Yan, Xiaoli
name: Shi, Jiajian
name: He, Yun
name: Xu, Jie
name: Lin, Liying
name: Chen, Wannan
name: Lin, Xinjian
name: Lin, Xu
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: Table S4. The sequences of primers used in real-time RT-PCR assay. (DOCX 14 kb)
Additional file 18: of Dynamic linear models guide design and analysis of microbiota studies within artificial human guts
Creators: name: Silverman, Justin
name: Durand, Heather
name: Bloom, Rachael
name: Sayan Mukherjee
name: David, Lawrence
Publisher: name: figshare
Year: 2018
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Inorganic Chemistry
subject: Computational Biology

description: Analysis of a toy simulated microbial community demonstrates the advantages of accounting for technical noise and uncertainty due to counting. (A) A 3 taxon (t1, t2, t3) microbial community was simulated according to the likelihood model used to analyze the artificial gut dataset (“Methods” section). Data from time-points 15, 16, and 20 were removed to simulate the effects of missing data on inferences. (B) A simulated phylogeny with annotated PhILR balances (n1, n2) used to analyze the simulated dataset. (+) and (−) refers to taxa in the numerator and denominator of associated balances. Pseudo-count based (PC) estimates for the multinomial parameters are obtained by adding 0.65 to all counts and then dividing each count by the sequencing depth of its associated sample and are shown as reference in (C-D). (C) Posterior mean and 95% credible interval for the multinomial parameters η. (D) Posterior mean and 95% credible interval for the unobserved microbial dynamics θ. PC estimates for the covariance of the multinomial parameters was obtained as the covariance of the first difference of the PC parameter estimates and are shown as reference in (E-F). 100 samples from the posterior distribution of the biological variation (W, E) and technical variation (V, F) depicted as 95% probability regions of the Logistic Normal distribution centered at the point in the simplex where each bacterial taxon is equally abundant. Black points represent the simulated biological variations (wt). (PDF 9820 kb)
Scorpaena scrofa Linnaeus 1758
Creators: name: Nurettin Meriç
name: Lütfiye Eryilmaz
name: Müfit Özulug
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Scorpaeniformes
Scorpaenidae
Scorpaena
Scorpaena scrofa

description: Scorpaena scrofa Linnaeus, 1758
Mediterranean Sea: 11000-737 (1 spc.), March 2003, Iskenderun Bay, trawl, C. Dalyan.
description: Published as part of Nurettin Meriç, Lütfiye Eryilmaz & Müfit Özulug, 2007, A catalogue of the fishes held in the Istanbul University, Science Faculty, Hydrobiology Museum., pp. 29-54 in Zootaxa 1472 on page 29
title: AN, Registre des écrous du Châtelet, Y5266, f. p1000836
Creators: name: Claustre, Julie
name: Nationales, Archives
name: Archives Nationales
name: Claustre, Julie
name: ArchivesNationales/J.CLAUSTRE/H.REGAZZI/2020
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Châtelet
subject: registre

description: Registre des écrous du Châtelet, Archives Nationales, Y5266. Numérisation en mode image.
description: Bibliographic citation: Archives Nationales, Registre des écrous du Châtelet, Y5266, f. p1000836
Explainable Recommendation via Multi-Task Learning in Opinionated Text Data
Creators: name: Wang, Nan
name: Wang, Hongning
name: Jia, Yiling
name: Yin, Yue
Publisher: name: arXiv
Year: 2018
Subjects: subject: Information Retrieval (cs.IR)
subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: Explaining automatically generated recommendations allows users to make more informed and accurate decisions about which results to utilize, and therefore improves their satisfaction. In this work, we develop a multi-task learning solution for explainable recommendation. Two companion learning tasks of user preference modeling for recommendation} and \textit{opinionated content modeling for explanation are integrated via a joint tensor factorization. As a result, the algorithm predicts not only a user's preference over a list of items, i.e., recommendation, but also how the user would appreciate a particular item at the feature level, i.e., opinionated textual explanation. Extensive experiments on two large collections of Amazon and Yelp reviews confirmed the effectiveness of our solution in both recommendation and explanation tasks, compared with several existing recommendation algorithms. And our extensive user study clearly demonstrates the practical value of the explainable recommendations generated by our algorithm.
description: 10 pages, SIGIR 2018