cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Open-TI: Open Traffic Intelligence with Augmented Language Model
Creators: name: Da, Longchao
name: Liou, Kuanru
name: Chen, Tiejin
name: Zhou, Xuesong
name: Luo, Xiangyong
name: Yang, Yezhou
name: Wei, Hua
Publisher: name: arXiv
Year: 2024
Subjects: subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences
subject: I.2.1; I.2.7; I.2.8

description: Transportation has greatly benefited the cities' development in the modern civilization process. Intelligent transportation, leveraging advanced computer algorithms, could further increase people's daily commuting efficiency. However, intelligent transportation, as a cross-discipline, often requires practitioners to comprehend complicated algorithms and obscure neural networks, bringing a challenge for the advanced techniques to be trusted and deployed in practical industries. Recognizing the expressiveness of the pre-trained large language models, especially the potential of being augmented with abilities to understand and execute intricate commands, we introduce Open-TI. Serving as a bridge to mitigate the industry-academic gap, Open-TI is an innovative model targeting the goal of Turing Indistinguishable Traffic Intelligence, it is augmented with the capability to harness external traffic analysis packages based on existing conversations. Marking its distinction, Open-TI is the first method capable of conducting exhaustive traffic analysis from scratch - spanning from map data acquisition to the eventual execution in complex simulations. Besides, Open-TI is able to conduct task-specific embodiment like training and adapting the traffic signal control policies (TSC), explore demand optimizations, etc. Furthermore, we explored the viability of LLMs directly serving as control agents, by understanding the expected intentions from Open-TI, we designed an agent-to-agent communication mode to support Open-TI conveying messages to ChatZero (control agent), and then the control agent would choose from the action space to proceed the execution. We eventually provide the formal implementation structure, and the open-ended design invites further community-driven enhancements.
description: Published on International Journal of Machine Learning and Cybernetics, Preview version: https://rdcu.be/dHu0b, Github: https://github.com/DaRL-LibSignal/OpenTI
Additional file 1: of Peer-instructed seminar attendance is associated with improved preparation, deeper learning and higher exam scores: a survey study
Creators: name: Bouwmeester, Rianne
name: Kleijn, Renske De
name: Rijen, Harold Van
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Student questionnaire developed for active seminar learning study. (DOC 35 kb)
Pseudocrates Meyrick 1918
Creators: name: Das, Apurva
name: Pathania, Prakash C.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Pseudocrates

description: Genus Pseudocrates Meyrick, 1918b: 99
Type species: Pseudocrates antisphena Meyrick, 1918b, by original designation
description: Published as part of Das, Apurva, Pathania, Prakash C. & Singh, Navneet, 2022, A catalogue of Indian Lecithoceridae (Lepidoptera: Gelechioidea), pp. 56-78 in Zootaxa 5165 (1) on page 69, DOI: 10.11646/zootaxa.5165.1.2, http://zenodo.org/record/6825526
title: "Sacra Famiglia", maniera di Roncalli Cristoforo detto Pomarancio, inv. 365 (ITA/EN)
title: Scheda catalogo digitale Borghese
titleType: AlternativeTitle
Creators: name: Iommelli, Antonio
name: Galleria Borghese
Publisher: name: Galleria Borghese
Year: 2024

description: Pubblicazione delle schede delle opere conservate nel museo ed estratte dal catalogo digitale di Galleria Borghese, nelle due versioni esistenti online, in italiano e inglese.

Collegamento al catalogo digitale:

ITA: https://www.collezionegalleriaborghese.it/

EN: https://www.collezionegalleriaborghese.it/en
Additional file 6: of Anti-obesity effects of Yerba Mate (Ilex Paraguariensis): a randomized, double-blind, placebo-controlled clinical trial
Creators: name: Kim, Sun-Young
name: Mi-Ra Oh
name: Min-Gul Kim
name: Han-Jeoung Chae
name: Soo-Wan Chae
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Pharmacology
subject: Developmental Biology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Side effects of the Yerba Mate and the placebo groups. (DOC 31 kb)
In-medium mass shift of two-flavored heavy mesons, $B_c$, $B^*_c$, $B_s$, $B^*_s$, $D_s$ and $D^*_s$
Creators: name: Zeminiani, G. N.
name: Beres, S. L. P. G.
name: Tsushima, K.
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: High Energy Physics - Lattice (hep-lat)
subject: Nuclear Experiment (nucl-ex)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: For the first time, we estimate the in-medium mass shift of the two-flavored heavy mesons $B_c, B_c^*, B_s, B_s^*, D_s$ and $D_s^*$ in symmetric nuclear matter. The estimates are made by evaluating the lowest order one-loop self-energies. The enhanced excitations of intermediate state heavy-light mesons in symmetric nuclear matter are the origin of their negative mass shift. This negative mass shift may be regarded as a signature of partial restoration of chiral symmetry in an empirical sense because the origin of the negative mass shift in the study is not directly related to the chiral symmetry mechanism. Our results show that the magnitude of the mass shift for the $B_c$ meson ($\bar{b} c$ or $b \bar{c}$) is larger than those of the $η_c (\bar{c} c)$ and $η_b (\bar{b} b)$, different from a naive expectation that it would be in between them. While, that of the $B_c^*$ shows the in between of the $J/ψ$ and $Υ$. We observe that the lighter vector meson excitation in each meson self-energy gives a dominant contribution for the corresponding meson mass shift, $B_c, B_s,$ and $D_s$.
description: 24 pages, 21 figures (44 .eps files for figures), changes: unnecessary files removed, 1 figure corrected, 2 figures added
Pseudocrates antisphena Meyrick 1918
Creators: name: Das, Apurva
name: Pathania, Prakash C.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Pseudocrates
Pseudocrates antisphena

description: 98. Pseudocrates antisphena Meyrick, 1918b: 99
Type locality: India, Tamil Nadu, Nilgiris
Distribution: Indian records: Tamil Nadu.
description: Published as part of Das, Apurva, Pathania, Prakash C. & Singh, Navneet, 2022, A catalogue of Indian Lecithoceridae (Lepidoptera: Gelechioidea), pp. 56-78 in Zootaxa 5165 (1) on page 69, DOI: 10.11646/zootaxa.5165.1.2, http://zenodo.org/record/6825526
Additional file 1: of Changes in active commuting and changes in physical activity in adults: a cohort study
Creators: name: Foley, Louise
name: Panter, Jenna
name: Heinen, Eva
name: Prins, Richard
name: Ogilvie, David
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Change categories for active commuting and physical activity variables.Â (DOC 33 kb)
title: Bringing intelligence to the edge: towards smart and adaptive residential learning healthcare systems
Creators: name: Fares, Nada
Publisher: name: University of Reading
Year: 2024

description: In light of an increasingly aging population, it becomes crucial to preserve good health 
and independence for as extended a period as feasible. Rather than hospitalization and 
placement in institutional care, individuals facing chronic illnesses or physical 
limitations can benefit from the support of smart healthcare Information and 
Communication Technology (ICT) solutions, right in the comfort of their own homes. 
 Currently, there is a shift in healthcare ICT solutions towards more balanced 
approaches that integrate hospitals and homes, with the ultimate goal of transitioning 
to home-centric healthcare systems in the future. However, for this evolution to 
progress, it necessitates the integration of new technologies, system architectures, and 
computing paradigms. 
 As this transformation advances towards the concept of Learning Healthcare Systems 
(LHS) it brings forth fresh challenges that must be addressed to meet evolving 
requirements. To enable the development of home-centric healthcare solutions it is 
essential to extend the concept of LHS to personal residences by incorporating 
intelligent Edge computing. 
 A gateway is a key component in residential healthcare systems. By enhancing its 
adaptability and imbuing it with intelligence, we can elevate residential healthcare 
systems to the status of Learning Healthcare Systems (LHSs), capable of making real-time decisions. To develop adaptable consumer gateways for consumer healthcare 
applications, this research work outlines a set of technical requirements concerning 
scalability, reliability, availability, interoperability, energy efficiency, and privacy that 
need to be fulfilled before any product or service can be created. 
 This research work aims to provide the requirements for the innovation of a one-for-all smart adaptive consumer gateway in residential learning healthcare systems and to 
influence the consumer healthcare field to consider the benefits of moving to adaptive 
gateways for future developments.
Additional file 1: Figure S1. of Long-term recovery from acute cold shock in Caenorhabditis elegans
Creators: name: Robinson, Joseph
name: Powell, Jennifer
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Marine Biology
subject: Hematology
subject: Computational Biology

description: Cold Shock associated Bag of Worms phenotype. Wild-type worms that died between 12 and 24Â h after a 4-hour cold shock exhibit dramatically reduced pigmentation. These worms exhibit the Bag of Worms phenotype, defined by the presence of internally hatched larvae. (PDF 421 kb)
Additional file 1: Table S1. of Does online dating lead to higher sexual risk behaviour? A cross-sectional study among MSM in Amsterdam, the Netherlands
Creators: name: Heijman, Titia
name: Stolte, Ineke
name: Geskus, Ronald
name: Matser, Amy
name: Davidovich, Udi
name: Xiridou, Maria
name: Loeff, Maarten Schim Van Der
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Characteristics of 1781 sexual partnerships of 577 men who have sex with men, by means how the participant established the partnership, and stratified by HIV status; 1076 partnerships of 351 HIV negative men, 497 partnerships of 153 HIV positive men, 208 partnerships of 73 HIV status unaware men, Amsterdam, 2008-9. (DOCX 27 kb)
Pseudocrates soritica Meyrick 1918
Creators: name: Das, Apurva
name: Pathania, Prakash C.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Pseudocrates
Pseudocrates soritica

description: 99. Pseudocrates soritica Meyrick, 1918b: 100
Type locality: India, Tamil Nadu, Palnis
Distribution: Indian records: Tamil Nadu.
description: Published as part of Das, Apurva, Pathania, Prakash C. & Singh, Navneet, 2022, A catalogue of Indian Lecithoceridae (Lepidoptera: Gelechioidea), pp. 56-78 in Zootaxa 5165 (1) on page 69, DOI: 10.11646/zootaxa.5165.1.2, http://zenodo.org/record/6825526
Probing Chiral-Symmetric Higher-Order Topological Insulators with Multipole Winding Number
Creators: name: Lin, Ling
name: Lee, Chaohong
Publisher: name: arXiv
Year: 2024
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Quantum Gases (cond-mat.quant-gas)
subject: FOS: Physical sciences

description: The interplay between crystalline symmetry and band topology gives rise to unprecedented lower-dimensional boundary states in higher-order topological insulators (HOTIs). However, the measurement of the topological invariants of HOTIs remains a significant challenge. Here, we define a {multipole winding number} (MWN) for chiral-symmetric HOTIs by applying a corner twisted boundary condition. The MWN, arising from both bulk and boundary states, accurately captures the bulk-corner correspondence including boundary-obstructed topological phases. To address the measurement challenge, we leverage the perturbative nature of the corner twisted boundary condition and develop a real-space approach for determining the MWN in both two-dimensional and three-dimensional systems. The real-space formula provides an experimentally viable strategy for directly probing the topology of chiral-symmetric HOTIs through dynamical evolution. Our findings not only highlight the twisted boundary condition as a powerful tool for investigating HOTIs, but also establish a paradigm for exploring real-space formulas for the topological invariants of HOTIs.
Additional file 1: of Anti-obesity effects of Yerba Mate (Ilex Paraguariensis): a randomized, double-blind, placebo-controlled clinical trial
Creators: name: Kim, Sun-Young
name: Mi-Ra Oh
name: Min-Gul Kim
name: Han-Jeoung Chae
name: Soo-Wan Chae
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Pharmacology
subject: Developmental Biology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: A CONSORT checklist for the reporting of this study. (DOC 58 kb)
VI-PANN: Harnessing Transfer Learning and Uncertainty-Aware Variational Inference for Improved Generalization in Audio Pattern Recognition
Creators: name: Fischer, John
name: Orescanin, Marko
name: Eckstrand, Eric
Publisher: name: arXiv
Year: 2024
Subjects: subject: Machine Learning (cs.LG)
subject: Sound (cs.SD)
subject: Audio and Speech Processing (eess.AS)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: Transfer learning (TL) is an increasingly popular approach to training deep learning (DL) models that leverages the knowledge gained by training a foundation model on diverse, large-scale datasets for use on downstream tasks where less domain- or task-specific data is available. The literature is rich with TL techniques and applications; however, the bulk of the research makes use of deterministic DL models which are often uncalibrated and lack the ability to communicate a measure of epistemic (model) uncertainty in prediction. Unlike their deterministic counterparts, Bayesian DL (BDL) models are often well-calibrated, provide access to epistemic uncertainty for a prediction, and are capable of achieving competitive predictive performance. In this study, we propose variational inference pre-trained audio neural networks (VI-PANNs). VI-PANNs are a variational inference variant of the popular ResNet-54 architecture which are pre-trained on AudioSet, a large-scale audio event detection dataset. We evaluate the quality of the resulting uncertainty when transferring knowledge from VI-PANNs to other downstream acoustic classification tasks using the ESC-50, UrbanSound8K, and DCASE2013 datasets. We demonstrate, for the first time, that it is possible to transfer calibrated uncertainty information along with knowledge from upstream tasks to enhance a model's capability to perform downstream tasks.
description: Published in IEEE Access
Additional file 1 of Systematic noise degrades gene co-expression signals but can be corrected
Creators: name: Freytag, Saskia
name: Gagnon-Bartsch, Johann
name: Speed, Terence
name: Bahlo, Melanie
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Supporting information. Further information concerning centering, application of RUV, gene prioiritization, simulations and results. (PDF 244 kb)
Sarisophora Meyrick 1904
Creators: name: Das, Apurva
name: Pathania, Prakash C.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Sarisophora

description: Genus Sarisophora Meyrick, 1904: 403
Type species: Sarisophora leptoglypta Meyrick, 1904, by original designation
description: Published as part of Das, Apurva, Pathania, Prakash C. & Singh, Navneet, 2022, A catalogue of Indian Lecithoceridae (Lepidoptera: Gelechioidea), pp. 56-78 in Zootaxa 5165 (1) on page 69, DOI: 10.11646/zootaxa.5165.1.2, http://zenodo.org/record/6825526
Music and Remembrance: A Celebration of Great Musical Partnerships
Creators: name: Lynn, Kevin
name: Garrett, Margo
name: VanderHart, Chanda
Publisher: name: Zenodo
Year: 2024

description: .pdf scan of a photo taken by photographer Kevin Lynn taken after the Carnegie Hall event 'Music and Remembrance: A Celebration of Great Musical Partnerships' and a .jpeg image of its content description. Provided by Margo Garrett and published here with the permission of Lynn, in association with the hybrid publication: Accompaniment in America: Contextualizing Collaborative Piano (VanderHart et al. 2025).

Depicted (l-r): Wally Harper, Samuel Sanders, Gladys Celeste, Kitty Carlisle Hart, Liz Smith, Margo Garrett, David Garvey, Philip Moll.
Prevalence of acute olfactory dysfunction differs between variants of SARS-CoV-2—results from chemosensitive testing in wild type, VOC alpha (B.1.1.7) and VOC delta (B.1617.2)
Creators: name: Hintschich, Constantin A.
name: Vielsmeier, Veronika
name: Bohr, Christopher
name: Hagemann, Jan
name: Klimek, Ludger
Publisher: name: Universität Regensburg
Year: 2022
Subjects: subject: ; SARS-CoV-2; COVID-19; Olfaction; Smell
subject: 610 Medizin

description: Background Olfactory dysfunction is one of the leading symptoms of COVID-19. Previous data suggest a different prevalence between the wild type virus and its subsequent variants. Here, we report on a prospective study to psychophysically compare olfactory function in acute SARS-CoV-2 infection between wild type, VOC alpha and VOC delta. Methods SARS-CoV-2 was confirmed by reverse-transcription quantitative real-time PCR and virus variants were differentiated by high-sensitive next-generation sequencing. Home-quarantined were sent a validated and blinded smell identification test. A detailed instruction ensured correct self-administration. Results A total of 125 patients were included in study. Patients with the wild type of SARS-CoV-2 self-evaluated their olfactory function significant lower on the visual analog score compared patients with the VOCs alpha or delta (4.1 +/- 1.5 vs. 6.8 +/- 2.9 and 7.3 +/- 0.9; p < 0.001). Likewise, a significant difference of the prevalence of psychophysically confirmed hyposmia (wild type: 73%; alpha: 41%; delta 48%; p < 0.01) and smell test score (48 +/- 25% vs. 70 +/- 23% and 67 +/- 18%; p < 0.01) could be seen between wild type on one side and VOCs alpha and delta on the other side. Conclusion In this study, both self-reports and psychophysical testing revealed a significant higher prevalence of olfactory impairment in the wild type of SARS-CoV-2 compared to the VOCs alpha and delta.
MOESM3 of Confirmation of translatability and functionality certifies the dual endothelin1/VEGFsp receptor (DEspR) protein
Creators: name: Herrera, Victoria
name: Steffen, Martin
name: Moran, Ann
name: Glaiza Tan
name: Khristine Pasion
name: Rivera, Keith
name: Pappin, Darryl
name: Ruiz-Opazo, Nelson
Publisher: name: Figshare
Year: 2016
Subjects: subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3: Figure S3. Unedited RNA-Seq entries showing the questioned two Gâ  s with insertion A or TA document difficult sequencing region as seen in manual sequencing.
Homonemobius Chopard 1935
Creators: name: He, Zhixin
name: Wang, Ning
name: Huang, Huateng
name: Ma, Libin
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Orthoptera
Trigonidiidae
Homonemobius

description: Genus Homonemobius Chopard, 1935
Type species: Nemobius monomorphus (= Homonemobius monomorphus) Bolívar, 1900
description: Published as part of He, Zhixin, Wang, Ning, Huang, Huateng & Ma, Libin, 2022, Two new species of ground crickets (Orthoptera: Trigonidiidae; Nemobiinae) from China, pp. 473-479 in Zootaxa 5092 (4) on page 473, DOI: 10.11646/zootaxa.5092.4.6, http://zenodo.org/record/5886518
Managing periprosthetic joint infection—a qualitative analysis of nursing staffs’ experiences
Creators: name: Walter, Nike
name: Wimalan, Bravena
name: Baertl, Susanne
name: Lang, Siegmund
name: Hinterberger, Thilo
name: Alt, Volker
name: Rupp, Markus
Publisher: name: Universität Regensburg
Year: 2022
Subjects: subject: PATIENT EXPECTATIONS; BURNOUT; NURSES; STRESS; IMPACT; HIP; Perirosthetic joint infection; Qualitative approach; Nursing
subject: 610 Medizin

description: Background Periprosthetic joint infection represents a major complication in orthopaedics and trauma surgery. For an ideal management approach, it is important to understand the distinct challenges for all persons involved in the treatment. Therefore, it was aimed at investigating (1) the impact of periprosthetic joint infection (PJI) on the well-being of nursing staff to (2) identify challenges, which could be improved facilitating the management of PJI. Methods This is a qualitative interview study. In total, 20 nurses of a German university orthopedic trauma center specialized on infectious complications were recruited using a purposive sampling strategy. Content analysis was performed on transcripts of individual in-person interviews conducted between March 2021 and June 2021. Results Three major themes could be extracted including (i) feelings associated with the management of PJI and the need for emotional support, illustrating the negative emotional impact on nurses, whereby receiving collegial support was perceived as an important coping strategy, (ii) patients' psychological burden, highlighting the nurses' lack of time to address mental issues adequately and, (iii) realization of the severity of PJI and compliance problems. Conclusion Identified facilitating factors for PJI management include strengthening of mental care in the treatment of PJI, providing opportunities for exchange among multidisciplinary team members and implementing compliance-enhancing strategies. The findings of this study can be beneficial for improving professionals' satisfaction, optimising the work environment, creating organizational structures which enhance opportunities for exchange and preventing mental health issues among the nursing team.
MOESM1 of De novo construction of a â  Gene-spaceâ   for diploid plant genome rich in repetitive sequences by an iterative Process of Extraction and Assembly of NGS reads (iPEA protocol) with limited computing resources
Creators: name: Aluome, Christelle
name: GrĂŠgoire Aubert
name: Carvalho, Susete Alves
name: Marie-Christine Paslier
name: Burstin, Judith
name: Brunel, Dominique
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Cell Biology
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: Additional file 1. Number of raw and trimmed reads from the different protocols of sequencing.
MOESM3 of De novo construction of a â  Gene-spaceâ   for diploid plant genome rich in repetitive sequences by an iterative Process of Extraction and Assembly of NGS reads (iPEA protocol) with limited computing resources
Creators: name: Aluome, Christelle
name: GrĂŠgoire Aubert
name: Carvalho, Susete Alves
name: Marie-Christine Paslier
name: Burstin, Judith
name: Brunel, Dominique
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Additional file 3. Evolution of the number and the size of the de novo genomics contigs as a function of the iterations.
Noninvasive treatment of two deeply invasive cutaneous squamous cell carcinomas of the midface located close to the orbits with intensity‐modulated arc therapy: A case report
Creators: name: Gruber, Isabella
name: Weidner, Karin
name: Koelbl, Oliver
Publisher: name: Universität Regensburg
Year: 2022
Subjects: subject: cutaneous squamous cell carcinoma, definitive radiotherapy, head and neck, organs at risk, surgery, VMAT
subject: 610 Medizin

description: Definitive radiotherapy is a curative and noninvasive treatment modality for cutaneous squamous cell carcinomas of the midface when surgery has an impact on function and cosmetics. Volumetric modulated arc therapy provides optimal dose coverage for complex-shaped tumors without compromising adjacent organs at risk.
Additional file 3: of Knowledge, attitudes, beliefs, values, preferences, and feasibility in relation to the use of injection safety devices in healthcare settings: a systematic review
Creators: name: Tarabay, Rami
name: Rassi, Rola El
name: Dakik, Abeer
name: Harb, Alain
name: Ballout, Rami
name: Diab, Batoul
name: Khamassi, Selma
name: Akl, Elie
Publisher: name: Figshare
Year: 2016
Subjects: Space Science
Medicine
Biotechnology
Science Policy

description: Characteristics of the included studies on intravenous and/or phlebotomy injection safety devices. (DOCX 37Â kb)
Sarisophora praecentrix Meyrick 1931
Creators: name: Das, Apurva
name: Pathania, Prakash C.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Sarisophora
Sarisophora praecentrix

description: 100. Sarisophora praecentrix Meyrick, 1931d: 78
Type locality: British New Guinea [Now in Papua New Guinea]
Distribution: Indian records: Central Himalaya. Global records: Papua New Guinea.
description: Published as part of Das, Apurva, Pathania, Prakash C. & Singh, Navneet, 2022, A catalogue of Indian Lecithoceridae (Lepidoptera: Gelechioidea), pp. 56-78 in Zootaxa 5165 (1) on page 69, DOI: 10.11646/zootaxa.5165.1.2, http://zenodo.org/record/6825526
Non-Gaussian diffusive fluctuations in Dirac fluids
Creators: name: Gopalakrishnan, Sarang
name: McCulloch, Ewan
name: Vasseur, Romain
Publisher: name: arXiv
Year: 2024
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Dirac fluids - interacting systems obeying particle-hole symmetry and Lorentz invariance - are among the simplest hydrodynamic systems; they have also been studied as effective descriptions of transport in strongly interacting Dirac semimetals. Direct experimental signatures of the Dirac fluid are elusive, as its charge transport is diffusive as in conventional metals. In this paper we point out a striking consequence of fluctuating relativistic hydrodynamics: the full counting statistics (FCS) of charge transport is highly non-gaussian. We predict the exact asymptotic form of the FCS, which generalizes a result previously derived for certain interacting integrable systems. A consequence is that, starting from quasi-one dimensional nonequilibrium initial conditions, charge noise in the hydrodynamic regime is parametrically enhanced relative to that in conventional diffusive metals.
description: 5 pages, 2 figures
A standardized marking procedure for ENT operations to prevent wrong-site surgery: development, establishment and subsequent evaluation among patients and medical personnel
Creators: name: Rohrmeier, Christian
name: Abudan Al-Masry, Narmeen
name: Keerl, Rainer
name: Bohr, Christopher
name: Mueller, Steffen
Publisher: name: Universität Regensburg
Year: 2022
Subjects: subject: SURGICAL SAFETY CHECKLIST; SINUS SURGERY; HEAD; Marking procedures; Wrong-site surgery; Wrong-side surgery; Patient safety; Checklist
subject: 610 Medizin

description: Purpose Wrong-site surgeries are rare but potentially serious clinical errors. Marking the surgical site is crucial to preventing errors, but is hindered in the ENT field by the presence of many internal organs. In addition, there is no standardized marking procedure. Methods Here, an ENT surgical-marking procedure was developed and introduced at a clinic. The procedure was evaluated through anonymized questionnaires. This study was conducted over a 6-month period by interviewing patients and, at the beginning and end of this period, doctors and other surgical staff. Results The internal organ-marking problem was solved by applying a fixed abbreviation for each procedure onto the shoulder in addition to marking the skin surface as close to the organ as possible. The procedure was described as practicable by 100% of the interviewees; 75% of the ENT physicians and 96.3% of the other surgical staff considered the procedure highly important for preventing site confusion, and 75% of the physicians had a consequently greater feeling of safety. Of the 248 patients surveyed, 96.0% considered the marking procedure useful, and 75.8% had a consequently greater feeling of safety. For 52.0%, the marking reduced their fear of the operation. Conclusions For the first time, a standardized procedure was developed to mark the site of ENT surgery directly, uniformly and safely on patients. The procedure was judged to be useful and practicable and was also deemed crucial for preventing site confusion. Patients felt safer and less fearful of the operation due to the marking.
Additional file 2: of Knowledge, attitudes, beliefs, values, preferences, and feasibility in relation to the use of injection safety devices in healthcare settings: a systematic review
Creators: name: Tarabay, Rami
name: Rassi, Rola El
name: Dakik, Abeer
name: Harb, Alain
name: Ballout, Rami
name: Diab, Batoul
name: Khamassi, Selma
name: Akl, Elie
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Characteristics of the included studies on subcutaneous, intramuscular, or intradermal injection safety devices. (DOC 79Â kb)
Vanishing coefficients in two $q$-series related to Legendre-signed partitions
Creators: name: Daniels, Taylor
Publisher: name: arXiv
Year: 2024
Subjects: subject: Number Theory (math.NT)
subject: FOS: Mathematics
subject: 11B65, 11P83

description: We demonstrate some 10-periodic properties of the coefficients of two $q$-series related to partition numbers signed by the Legendre symbol $(\frac{a}{5})$ and to the Rogers-Ramanujan continued fraction $R(q)$.
description: Updated version with changes made during publication. 10 pp
Additional file 1: Figure S1. of Resolving the evolution of the mammalian middle ear using Bayesian inference
Creators: name: Ramírez-Chaves, Héctor
name: Weisbecker, Vera
name: Wroe, Stephen
name: Phillips, Matthew
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 60506 Virology
subject: Computational Biology

description: Bayesian inference phylogeny using Rougier et al.’s [21] dataset when cheek tooth characters were excluded. This analysis clarified the placement of the early “symmetrodont” Kuehneotherium outside the mammalian crown. Figure S2. Bayesian inference phylogeny for Luo et al.’s [22] dataset, but with cheek tooth characters excluded from. The “pseudotribosphenic” shuotheriids (purple) fell outside crown mammals and the placement of the enigmatic, fossorial Fruitafossor (yellow) was clarified as grouping closer to therians than to monotremes (green). Table S1. Posterior probabilities. Description: A: Shuotheriidae allowed to group with australosphenidans. B: Constraining Shuotheriidae to fall outside Mammalia. C: Constraining monophyly of the multicuspate haramiyidans and multituberculates. D: Forces Kuehneotherium outside Mammalia. E: Allows the unstable Kuehneotherium to fall freely in the phylogeny. 1: Alternative analyses including Aukstribosphenos and Steropodon with postdentary trough coded as absent. (DOCX 231 kb)
The impact of bicuspid aortic valve morphology on von Willebrand factor function in patients with severe aortic stenosis and its change after TAVI
Creators: name: Roth, Nastasia
name: Heidel, Carolin
name: Xu, Congde
name: Hubauer, Ute
name: Wallner, Stefan
name: Meindl, Christine
name: Holzamer, Andreas
name: Hilker, Michael
name: Creutzenberg, Marcus
name: Sossalla, Samuel
name: Maier, Lars S.
name: Jungbauer, Carsten
name: Debl, Kurt
Publisher: name: Universität Regensburg
Year: 2022
Subjects: subject: EUROPEAN ASSOCIATION; AMERICAN SOCIETY; DISEASE; IMPLANTATION; GUIDELINES; REPLACEMENT; MANAGEMENT; UPDATE; von Willebrand factor; Acquired von Willebrand syndrome; Bicuspid aortic valve; Aortic stenosis; Transcatheter aortic valve implantation
subject: 610 Medizin

description: Background Aortic stenosis (AS) can cause acquired von Willebrand syndrome (AVWS) and valve replacement has been shown to lead to von Willebrand factor (vWF) recovery. The aim of the current study was to investigate the prevalence of AVWS in different severe AS phenotypes and its course after transcatheter aortic valve implantation (TAVI). Methods 143 patients with severe AS undergoing TAVI were included in the study. vWF function was assessed at baseline, 6 and 24 h after TAVI. AVWS was defined as a reduced vWF:Ac/Ag ratio <= 0.7. Phenotypes were classified by tricuspid (TAV) and bicuspid (BAV) valve morphology, mean transvalvular gradient (P-mean), stroke volume index (SVI), ejection fraction (EF) and indexed effective orifice area (iEOA). Results AVWS was present in 36 (25.2%) patients before TAVI. vWF:Ac/Ag ratio was significantly lower in high gradient compared to low-gradient severe AS [0.78 (IQR 0.67-0.86) vs. 0.83 (IQR 0.74-0.93), p< 0.05] and in patients with BAV compared to TAV [0.70 (IQR 0.63-0.78) vs. 0.81 (IQR 0.71-0.89), p < 0.05]. Normalization of vWF:Ac/Ag ratio was achieved in 61% patients 24 h after TAVI. As in the overall study cohort, vWF:Ac/Ag ratio increased significantly in all severe AS subgroups 6 h after TAVI (each p < 0.05). Regarding binary logistic regression analysis, BAV was the only significant predictor for AVWS. Conclusions BAV morphology is a strong predictor for AVWS in severe AS. TAVI restores vWF function in most patients with severe AS independently of AS phenotype and valve morphology. [GRAPHICS] .
Vowel duration and consonant voicing: A production study
Creators: name: Coretta, Stefano
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Linguistics
subject: FOS: Languages and literature
subject: Phonetics and Phonology
subject: Social and Behavioral Sciences
subject: articulation
subject: electroglottography
subject: English
subject: Italian
subject: linguistics
subject: open science
subject: phonetics
subject: phonology
subject: Polish
subject: ultrasound tongue imaging
subject: voicing
subject: vowel duration

description: Research hub of the PhD project 'Vowel duration and consonant voicing: A production study'
Spatulignatha Gozmany 1978
Creators: name: Das, Apurva
name: Pathania, Prakash C.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Spatulignatha

description: Genus Spatulignatha Gozmány, 1978: 146
Type species: Lecithocera hemichrysa Meyrick, 1910b, by original designation
description: Published as part of Das, Apurva, Pathania, Prakash C. & Singh, Navneet, 2022, A catalogue of Indian Lecithoceridae (Lepidoptera: Gelechioidea), pp. 56-78 in Zootaxa 5165 (1) on page 69, DOI: 10.11646/zootaxa.5165.1.2, http://zenodo.org/record/6825526
Algebraic solution of project scheduling problems with temporal constraints
Creators: name: Krivulin, N.
name: Gubanov, S.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Optimization and Control (math.OC)
subject: Systems and Control (eess.SY)
subject: FOS: Mathematics
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: 90C24 (Primary), 15A80, 90C47, 90B35 (Secondary)

description: New solutions for problems in optimal scheduling of activities in a project under temporal constraints are developed in the framework of tropical algebra which deals with the theory and application of algebraic systems with idempotent operations. We start with a constrained tropical optimization problem that has an objective function represented as a vector form given by an arbitrary matrix, and that can be solved analytically in a closed but somewhat complicated form. We examine a special case of the problem when the objective function is given by a matrix of unit rank, and show that the solution can be sufficiently refined in this case, which results in an essentially simplified analytical form and reduced computational complexity of the solution. We exploit the obtained result to find complete solutions of project scheduling problems to minimize the project makespan and the maximum absolute deviation of start times of activities under temporal constraints. The constraints under consideration include ``start--start'', ``start--finish'' and ``finish--start'' precedence relations, release times, release deadlines and completion deadlines for activities. As an application, we consider optimal scheduling problems of a vaccination project in a medical centre.
description: 21 pages
Additional file 1: of Knowledge, attitudes, beliefs, values, preferences, and feasibility in relation to the use of injection safety devices in healthcare settings: a systematic review
Creators: name: Tarabay, Rami
name: Rassi, Rola El
name: Dakik, Abeer
name: Harb, Alain
name: Ballout, Rami
name: Diab, Batoul
name: Khamassi, Selma
name: Akl, Elie
Publisher: name: Figshare
Year: 2016
Subjects: Medicine
Biotechnology
Science Policy

description: Search strategy used in Medline. (DOC 29Â kb)
Pteronemobius Jacobson 1904
Creators: name: He, Zhixin
name: Wang, Ning
name: Huang, Huateng
name: Ma, Libin
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Orthoptera
Trigonidiidae
Pteronemobius

description: Genus Pteronemobius Jacobson, 1904
Type species: Nemobius tartarus (= Pteronemobius heydenii tartarus) Saussure, 1874
description: Published as part of He, Zhixin, Wang, Ning, Huang, Huateng & Ma, Libin, 2022, Two new species of ground crickets (Orthoptera: Trigonidiidae; Nemobiinae) from China, pp. 473-479 in Zootaxa 5092 (4) on page 476, DOI: 10.11646/zootaxa.5092.4.6, http://zenodo.org/record/5886518
Additional file 3: Figure S3. of Drought stress in maize causes differential acclimation responses of glutathione and sulfur metabolism in leaves and roots
Creators: name: Ahmad, Nisar
name: Malagoli, Mario
name: Wirtz, Markus
name: Ruediger Hell
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology

description: Steady state levels of glutamate and glycine in roots and shoots of drought stressed maize plants. A-B) Steady state levels of glutamate (A) and glycine (B) in leaves and roots of maize plants with sufficient (black) and restricted (white) water supply. Data are means ± SD of five individual replicates. Asterisks indicates statistical differences as determined by the unpaired t-test (*,p ≤ 0.05). (PDF 155 kb)
Additional file 3: Table S1. of “There’s no billing code for empathy” - Animated comics remind medical students of empathy: a qualitative study
Creators: name: Tsao, Pamela
name: Yu, Catherine
Publisher: name: Figshare
Year: 2016
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Description of data: Characteristics of the study participants. (PDF 32 kb)
Zur Neurobiologie der Psychopathie
Creators: name: Wild, Laura M.
name: Poeppl, Timm B.
Publisher: name: Universität Regensburg
Year: 2022
Subjects: subject: Hirnfunktion · Hirnstruktur · Genexpression · Metaanalyse · Neurotransmitter
subject: 610 Medizin

description: Die Erforschung der neurobiologischen Grundlagen der Psychopathie hat in den letzten Jahren an Bedeutung gewonnen. In diesem Artikel soll eine kurze Übersicht des aktuellen Stands der Forschung gegeben werden. In Bildgebungsmetaanalysen finden sich Hinweise auf eine Volumenminderung grauer Substanz im linken dorsolateralen präfrontalen Kortex und im medialen Orbitofrontalkortex bei Psychopathen. Des Weiteren zeigt eine groß angelegte Metaanalyse robuste Evidenz für veränderte Hirnaktivität im frontoinsulären Kortex, im lateralen präfrontalen Kortex, im dorsomedialen präfrontalen Kortex und in der rechten Amygdala. Aus der Kombination von Neurobildgebung und Datenbankanalysen ist zudem bekannt, dass es eine Beziehung zwischen den beschriebenen Hirnveränderungen und typischen Psychopathiesymptomen gibt. Der Vergleich von Hirnveränderungen mit Neurotransmitterkarten und Genexpressionskarten gibt Hinweise auf mögliche zugrunde liegende molekulare Mechanismen, insbesondere eine Dysregulation im serotonergen System. In der Zusammenschau weisen diese Befunde klar auf fassbare neurobiologische Veränderungen bei hochgradig psychopathischen Personen hin. Zwar können sie keinen Aufschluss darüber geben, ob es sich bei den Veränderungen um Ursache oder Folge der Störung handelt, doch können sie Ansatzpunkte für spezifischere, biologische Therapieverfahren bieten.
Spatulignatha hemichrysa Lecithocera
Creators: name: Das, Apurva
name: Pathania, Prakash C.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Spatulignatha
Spatulignatha hemichrysa

description: 101. Spatulignatha hemichrysa (Meyrick, 1910b: 447) (Lecithocera)
Type locality: India, Assam, Khasi Hills [Now in Meghalaya]
Distribution: Indian records: Meghalaya. Global records: China, Vietnam.
description: Published as part of Das, Apurva, Pathania, Prakash C. & Singh, Navneet, 2022, A catalogue of Indian Lecithoceridae (Lepidoptera: Gelechioidea), pp. 56-78 in Zootaxa 5165 (1) on page 69, DOI: 10.11646/zootaxa.5165.1.2, http://zenodo.org/record/6825526
Additional file 2: of Using standardized patient encounters to teach longitudinal continuity of care in a family medicine clerkship
Creators: name: Vest, Bonnie
name: Lynch, Abigail
name: McGuigan, Denise
name: Servoss, Timothy
name: Zinnerstrom, Karen
name: Symons, Andrew B.
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy
subject: 60506 Virology

description: L-OSCE Post-Test- Final. (DOCX 22 kb)
Multisensory teaching and learning process of undergraduate nursing students: a scoping review protocol.
Creators: name: Santos, Kelli Borges Dos
name: Esplendori, Gabriela
name: Vilanice Alves De Araújo Püschel
Publisher: name: OSF Registries
Year: 2020
Subjects: subject: Educational Methods
subject: Medicine and Health Sciences
subject: Education
subject: Higher Education
subject: Nursing
subject: FOS: Health sciences
subject: Multisensory learning
subject: Multisensory teaching
subject: Nursing students
subject: Teaching materials
subject: Teaching strategies
subject: cognition
subject: memory
subject: undergraduate nursing student

description: There will be no language limits to expand mapping in searches (previously there were limits for English, Spanish, and English). The title of this scoping review protocol and the item “Description” were rewritten with more details.
Additional file 1: of Evaluation of a video-based Internet intervention as preparation for inpatient psychosomatic rehabilitation: study protocol for a randomized controlled trial
Creators: name: Becker, Jan
name: Beutel, Manfred
name: Gerzymisch, Katharina
name: Schulz, Dirk
name: Siepmann, Martin
name: Knickenberg, Rudolf
name: SchmĂ¤Deke, Stefan
name: Ferdinand, Peter
name: RĂźdiger Zwerenz
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: SPIRIT checklist. Overview of important items of a clinical trial and their placement in the manuscript. (DOC 122 kb)
title: Exploring Resilient, Adaptable and Feasible Approaches to Retrofitting Listed Commercial Buildings: Douglas Primary School Case Study
Creators: name: Guadalupe Mendoza Duron, Elsa
name: Rodrigues, Lucelia
Publisher: name: University of Southampton
Year: 2023
Subjects: subject: Retrofit, Listed Buildings, Energy Efficiency, Comfort, Operational Carbon

description: From the building stock available, 70% of UK non-domestic buildings were built before 2000 and therefore will greatly impact the Net Zero roadmap. Standards for retrofitting housing exist, but not for commercial buildings. The aim was to explore resilient, adaptable, and feasible retrofit strategies for a listed commercial building, for improving its energy performance and to understand the potential and limitations of retrofitting historic buildings. The methodology ranged from a comparative analysis of existing approaches, post-occupancy evaluation, and assessment of operational carbon. The case study was a former Victorian school currently occupied as a community art centre. Performance data and simulations were complemented with comfort perception interviews. The fabric-first approach resulted in an 83% reduction of operational WLC, although it did not achieve heating demand targets. The findings provided a step forward in the understanding of the limitations of retrofitting the over 400,000 listed buildings in the UK.