cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
An Adaptive, Kink-Based Approach to Path Integral Calculations
Creators: name: Hall, Randall W.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: A kink-based expression for the canonical partition function is developed using Feynman's path integral formulation of quantum mechanics and a discrete basis set. The approach is exact for a complete set of states. The method is tested on the 3x3 Hubbard model and overcomes the sign problem seen in traditional path integral studies of fermion systems. Kinks correspond to transitions between different N-electron states, much in the same manner as occurs in configuration interaction calculations in standard ab initio methods. The different N-electron states are updated, based on which states occur frequently during a Monte Carlo simulation, giving better estimates of the true eigenstates of the Hamiltonian.
description: 24 pages, to be published in J. Chem. Phys
Large-for-gestational-age or macrosomia as a classifier for risk of adverse perinatal outcome: a retrospective cross-sectional study
Creators: name: Modzelewski, Jan
name: Pokropek, Artur
name: Jakubiak-Proć, Monika
name: Muzyka-Placzyńska, Katarzyna
name: Filipecka-Tyczka, Dagmara
name: Kajdy, Anna
name: Rabijewski, Michał
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Chemical Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Small for gestational age (SGA) fetuses and neonates are of great interest, while those who are too big are much less studied. The aim was to analyze the classifiers described by ACOG “Fetal macrosomia” practice bulletin as predictors of adverse perinatal outcomes for overgrown fetuses and their mothers. From a database of 53,586 singleton term births, appropriate-for-gestational-age (AGA), large for gestational age (LGA), and macrosomic deliveries were selected. AGA served as a control. The crude and adjusted odds ratios (aORs) were calculated for large-for-gestational-age >90th centile, and macrosomia >4000 g, >4250 g, and >4500 g. Patients with and without diabetes were analyzed separately. Macrosomia >4000 g performed poorer than other classifiers. LGA performed comparably to other definitions of macrosomia. Diabetes carries a severe risk of complications for overgrown neonates, but those non-diabetic also have increased risk. Definition of macrosomia as weight >4000 g should be reconsidered. LGA >90th centile should be used as a definition of fetal overgrowth along with other definitions of macrosomia.
Food Insecurity and its Determinants
Creators: name: Warr, Peter
name: Warr, Peter
Publisher: name: Unknown
Year: 2014
Subjects: Food Security and Poverty
International Development

description: Newly available evidence confirms that expansion of aggregate food supplies within developing countries themselves is strongly associated with reduced undernourishment. It is not sufficient to rely solely on aggregate economic growth or reductions in poverty incidence to deliver improved food security. But the evidence also shows that higher food prices significantly increase the rate of undernourishment. It is therefore important to stimulate agricultural output without raising domestic food prices. Improvements in agricultural productivity achieve that. But agricultural protection aimed at food self-sufficiency does not, because it operates through an increase in domestic food proces. It delivers benefits to those food insecure people who are not sellers of food. But in most countries their number is exceeded by the food insecure people who are net buyers of food and are made more food insecure by increased food prices. Food self-sufficiency does not imply food security.
Ultrasound screening for fetal anomalies in a single center: diagnostic performances twenty years after the Eurofetus Study
Creators: name: Sileo, Filomena G.
name: Finarelli, Alessandra
name: Contu, Giannina
name: Lugli, Licia
name: Dipace, Vincenza
name: Ballarini, Michela
name: Guidi, Cristina
name: Facchinetti, Fabio
name: Bertucci, Emma
Publisher: name: Taylor & Francis
Year: 2021
Subjects: Space Science
Medicine
Cell Biology
Molecular Biology
Neuroscience
Biotechnology
Biological Sciences not elsewhere classified
Developmental Biology
Science Policy

description: To establish the accuracy of ultrasound in detecting fetal anomalies looking at the concordance between prenatal and postnatal diagnosis. Retrospective analysis of concordance between prenatal and postnatal/autoptic diagnosis of fetuses with congenital abnormalities. Data are from a single center (Policlinico di Modena); all fetuses included were born between 2017 and 2018 and with a follow-up of at least 6 months. We included all deliveries (including perinatal deaths) and termination of pregnancy (TOP) for fetal indication. We calculated sensibility, sensitivity, Positive and Negative Likelihood Ratio, positive and negative predictive value of ultrasound. During the study period 5920 deliveries, including perinatal deaths, and 28 TOP for fetal indication were registered at our center. The prevalence of congenital malformations was 2.6% (153/5920). At least one ultrasound was performed in our center in 1250 women delivering in our unit. All 28 TOP had the anomaly scan performed in our center. Among the total 1278 women scanned in our unit, there were 128 (10%) suspicious scans. In 5/128 (3.9%) cases we diagnosed a false alarm; in 8/128 (6.2%) cases an evolutive malformation with in-utero regression. The prenatal diagnosis was confirmed in 77 (60.2%) cases at birth and in 28/128 (21.9%) at postmortem analysis while there were 10/128 false positive (7.8%). Among the 153 congenital malformations diagnosed at birth, the anomaly scan was performed in our Prenatal Medicine Unit in 92 (60.1%) fetuses. Among these, there were 15 false negatives (9.8%) while in 77/92 (83.7%) the malformation at birth agreed with the sonographic diagnosis. Sensitivity and specificity of ultrasound were 87.5% (IC95 80.2–92.8%) and 99.1% (IC95 98.4–99.6%) respectively with a Positive Likelihood Ratio and Negative Likelihood Ratio of 101.3 (IC95 54.5–188.5) and 0.13 (IC95 0.08–0.2); Positive Predictive Value and Negative Predictive Value were 91.3% (IC95 85–95.1%) and 98.7(IC95 98–99.2%). Anomaly scan in pregnancy allows the diagnosis of congenital malformations with a sensibility of 87.5% and specificity of 99.1%. The main limitations of this study are its retrospective design and that it was conducted in a single referral center.
Benchmark of density functional theory for superconductors in elemental materials
Creators: name: Kawamura, Mitsuaki
name: Hizume, Yuma
name: Ozaki, Taisuke
Publisher: name: arXiv
Year: 2019
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: Systematic benchmark calculations for elemental bulks are presented to validate the accuracy of density functional theory for superconductors. We developed a method to treat the spin-orbit interaction (SOI) together with the spin fluctuation (SF) and examine their effect on the superconducting transition temperature. We found the following results from the benchmark calculations: (1) The calculations, including SOI and SF, reproduce the experimental superconducting transition temperature ($T_c$) quantitatively. (2) The effect by SOI is small excepting a few elements such as Pb, Tl, and Re. (3) SF reduces $T_c$s, especially for the transition metals, while this reduction is too weak to reproduce the $T_c$s of Zn and Cd. (4) We reproduced the absence of superconductivity for alkaline (earth) and noble metals. These calculations confirm that our method can be applied to a wide range of materials and implies a direction for the further improvement of the methodology.
description: 12 pages, 8 figures
Novel Synthetic Routes to Fluorinated Heterocycles using the Fluoroiodane Reagent
Creators: name: Riley, William
Publisher: name: University of Leicester
Year: 2021
Subjects: Uncategorized

description: Over 85 % of small molecule pharmaceuticals approved by the FDA in 2019 contained a nitrogen-based heterocycle and over a quarter of all FDA approved drugs on the market contain at least one fluorine atom. The activity of heterocycles in vivo justifies their prominence, and the modest C-F bond has an instrumental influence on the pharmacokinetic properties of therapeutics. In chapter 2, the fluorocyclisation of unsaturated oximes to form novel fluorinated dihydro-oxazines was achieved using the hypervalent iodine(III) reagent, fluoroiodane, and stoichiometric AgBF4. Moderate yields (42-53 %) were delivered under rapid and mild reaction conditions. This unique reaction showed novel chemoselectivity over existing methodology using electrophilic fluoraza reagents which normally produce fluorinated dihydroisoxazoles.In chapter 3, an aminofluorination reaction was developed using β,γ-unsaturated hydrazones to prepare novel fluorinated tetrahydropyridazines (70-99 %) in just 15 minutes at room temperature. The reaction conditions were refined from stoichiometric AgBF4 to metal-free reaction conditions in the solvent, hexafluoroisopropanol (HFIP). NMR studies showed that the fluoroiodane reagent was activated by hydrogen bonding to HFIP. The methodology was also extended to the chlorocyclisations of β,γ-unsaturated hydrazones using chloroiodane to generate chlorinated tetrahydropyridazines in excellent yields (70-93 %). To our knowledge, this is the first time that chloroiodane has shown divergent selectivity, since traditional electrophilic fluorinating and chlorinating reagents normally form halogenated dihydropyrazoles.Further exploration of hydrogen bond catalysis in the aminofluorination reaction was performed in chapter 4. When the amount of HFIP was reduced from neat solvent to catalytic quantities, excellent yields (93 %) were still obtained. A range of urea catalysts were screened and shown to perform the same transformation in good yields (up to 75 %). The pursuit of enantioselective fluorination was then investigated and a series of chiral bis-urea catalysts bearing a (S)-binaphthalene backbone were synthesised. Unfortunately, the enantioselective fluorination was unsuccessful (up to 12 % ee) with the system suffering from a background fluorination, low reaction conversions and incompatibility with conventional methods for determining the enantiomeric excess.
Electromagnetic Radiation and Motion of a Particle
Creators: name: Klacka, Jozef
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We consider the motion of uncharged dust grains of arbitrary shape including the effects of electromagnetic radiation and thermal emission. The resulting relativistically covariant equation of motion is expressed in terms of standard optical parameters. Explicit expressions for secular changes of osculating orbital elements are derived in detail for the special case of the Poynting-Robertson effect. Two subcases are considered: (i) central acceleration due to gravity and the radial component of radiation pressure independent of the particle velocity, (ii) central acceleration given by gravity and the radiation force as the disturbing force. The latter case yields results which may be compared with secular orbital evolution in terms of orbital elements for an arbitrarily shaped dust particle. The effects of solar wind are also presented.
Optical properties of a Quantum-Dot Cascade Structure
Creators: name: Apalkov, V. M.
name: Chakraborty, Tapash
Publisher: name: arXiv
Year: 2001
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We report on our theoretical studies of the luminescence spectra of a quantum cascade laser where the quantum wells in the active regions are replaced by parabolic quantum dots. We analyze the influence of shape and size of the dots on the luminescence spectra. The emission spectra have interaction induced blueshift which increases almost linearly with increasing electron number. The blueshift is smaller for larger and non-circular dots. For large dots, shape of the emission line has weak dependence on the shape of quantum dots.
description: 4 pages, 4 figures
BITS - Benefits of Terminologies in Earth System Science
Creators: name: Martens, Claudia
name: Ganske, Anette
name: Wolodkin, Alexander
Publisher: name: Zenodo
Year: 2025
Subjects: Curation infrastructure: Tools, systems and services that are in development
Curation infrastructure: Evaluations of existing tools and principles in data curation
Terminologies
Earth System Sciences
Interoprability
Metadata
Discoverability
IDCC25

description: BITS aims to address a major remaining obstacle to the application of FAIR principles in Earth System Science (ESS) by addressing the inadequate implementation of encoding semantics or, in other words, data interoperability of research data. Within BITS, a Terminology Service (TS) will be established at the TIB – Leibniz Information Centre for Science and Technology for subfields of climate science and geoscientific collections (involving curated objects from mineralogy, petrology, and paleontology) and implemented at the two different data repositories of the German Climate Computing Center (DKRZ) and the Senckenberg - Leibniz Institution for Biodiversity and Earth System Research (SGN). The experience gained will be used to create blueprints that can later serve to link other Earth System Science repositories to the TS, in close collaboration with infrastructure providers on national, european and international level. By providing a reliable and user-friendly tool, the Terminology Service will contribute significantly to the promotion of open science and effective information exchange within the scientific community.
Additional file 1 of FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences
Creators: name: Sagnik Banerjee
name: Bhandary, Priyanka
name: Woodhouse, Margaret
name: Sen, Taner Z.
name: Wise, Roger P.
name: Andorf, Carson M.
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Artificial Intelligence and Image Processing
subject: FOS: Computer and information sciences

description: Additional file 1. Supplementary figures (S1–S9).
Kondo impurities in nanoscopic systems: new confinement-induced regimes
Creators: name: Cornaglia, P. S.
name: Balseiro, C. A.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We present results for Kondo impurities in nanoscopic systems. Using exact diagonalization in small clusters and Wilson's renormalization group we analyze an isolated system and a nanoscopic system weakly coupled to a macroscopic reservoir. In the latter case, new regimes not observed in macroscopic homogeneous systems are induced by the confinement of conduction electrons. These new confinement-induced regimes are very different depending on whether the Fermi energy coincides with the energy of a resonant state or lies between two quasi-bound states.
description: 4 pages, 4 figures
word2ket: Space-efficient Word Embeddings inspired by Quantum Entanglement
Creators: name: Panahi, Aliakbar
name: Saeedi, Seyran
name: Arodz, Tom
Publisher: name: arXiv
Year: 2019
Subjects: subject: Machine Learning (cs.LG)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: Deep learning natural language processing models often use vector word embeddings, such as word2vec or GloVe, to represent words. A discrete sequence of words can be much more easily integrated with downstream neural layers if it is represented as a sequence of continuous vectors. Also, semantic relationships between words, learned from a text corpus, can be encoded in the relative configurations of the embedding vectors. However, storing and accessing embedding vectors for all words in a dictionary requires large amount of space, and may stain systems with limited GPU memory. Here, we used approaches inspired by quantum computing to propose two related methods, {\em word2ket} and {\em word2ketXS}, for storing word embedding matrix during training and inference in a highly efficient way. Our approach achieves a hundred-fold or more reduction in the space required to store the embeddings with almost no relative drop in accuracy in practical natural language processing tasks.
Habronestes pictus
Creators: name: Baehr, Barbara
Publisher: name: Zenodo
Year: 2003
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Zodariidae
Habronestes
Habronestes pictus

description: Habronestes pictus species-group
 Diagnosis. Carapace not raised in front; AME or PME never largest eyes. Eyes in 2 rows, both rows procurved or in circular group.All eyes nearly equal-sized or AME smallest. Abdomen dark brown with 2–5 pairs of white patches on top, and 1–3 patches in front of spinnerets.
 Description. Male (AM KS55869). Small to medium sized spiders (2.5–10.5) long. Colour. Carapace, sternum and chelicerae sepia brown or orange; maxillae, labium sepia brown, distally white. Abdomen sepia brown with 2–5 pairs of white patches on top and 1–3 patches in front of spinnerets; laterally with 1or 2 undulating horizontal white stripes; ventrally, 1 longitudinal white stripe from epigastric fold to near tracheal spiracle or none. Legs yellow or pale brown; clearly annulated or with indistinct colour pattern. Carapace. Oval; finely reticulated; with lateral rim and longitudinal fovea. Sternum. Heart-shaped anteriorly straight; with lateral rim, no lateral extensions; finely striated; with short and longer setae. Eyes. All eyes nearly equal-sized or AME smallest. In 2 rows each with 4 eyes, both rows procurved or circular around AME. Mouthparts. Chelicerae, without teeth but with rows of hairs, bordering mesial margin, dorsally with a few hairs and bristles, laterally with condyle. Maxillae triangular, with promarginal scopula and without serrula; labium triangular. Abdomen. Oval; with ordinary short hairs; ALS on common base, conical, with very short distal segment; PLS small, widely spaced with PMS in one row; PMS tiny; colulus tiny with some hairs. Tracheal spiracle small slit-like, with sclerotized cover. Legs. Length formula 4123; 3rd claw on onychium (Fig. 51). Male palp (Figs. 1, 2). RCF deep,  2 3  to whole of cymbium length. LTA with long vertical stalk and irregular horizontal plate; DTA with flattened or thin stalk and curled apical end covered with spicules; VTA sickle-shaped, long, with sharp or blunt tip; embolus thin and semicircular. Tibiae short with DTiA and VTiA.
description: Published as part of Baehr, Barbara, 2003, Revision of the Australian Spider Genus Habronestes (Araneae: Zodariidae). Species of New South Wales and the Australian Capital Territory, pp. 343-376 in Records of the Australian Museum 55 (3) on page 356, DOI: 10.3853/j.0067-1975.55.2003.1389, http://zenodo.org/record/10092723
Welfare and Environmental Effects of Subsidies and Tariffs in North-South Trade in Renewable Energy Equipment
Creators: name: Wei, Wenjie
name: Wei, Wenjie
Publisher: name: Unknown
Year: 2014
Subjects: subject: International Relations/Trade
subject: Resource /Energy Economics and Policy
subject: Renewable energy equipment
subject: Environmental goods
subject: Environmental subsidies
subject: Trade and environment
subject: Feed-in tariff
subject: Pollution
subject: North-South Trade 􀀀

description: A two-country, three-good general equilibrium model is developed to examine the welfare and environmental effects for countries (North and South) of demand subsidies (a feed-in tariff) to renewable energy equipment, as well as tariffs on renewable energy equipment imports. Both North and South renewable energy equipment producers engage in Cournot duopoly competition with a homogeneous product in both countries. Both countries also produce polluting fossilfuel- generated electricity and a numeraire good. We show, inter alia, that an endogenous Northern import tariff is increasing in (independent of) a Northern (Southern) feed-in tariff premium, even if the North government does not internalize any pollution harm. A Northern feed-in tariff premium may hurt domestic environment due to a rebound effect and it may also hurt Southern welfare.1
Evaluating Automated FAIR Assessment Tools for Biomedical Data Repositories
Creators: name: Iarkaeva, Anastasiia
name: Rothfritz, Laura
Publisher: name: Zenodo
Year: 2025
Subjects: Curation infrastructure: Evaluations of existing tools and principles in data curation
FAIR Principles
FAIR Assessment Tool
Automated Assesment
Biomedical Data
IDCC25

description: As data sharing and reuse in biomedical research become increasingly prioritized, adherence to the FAIR (Findable, Accessible, Interoperable, Reusable) principles is crucial for enhancing data reusability and facilitating more efficient data discoverability and sharing. One way to assess the FAIRness of individual data sets is through automated FAIR assessment tools. This study focused on the automated approach to assess its reliability and metadata consistency across different biomedical repositories.

The efficacy of four such tools - F-UJI, FAIR Enough, FAIR-Checker, and FAIR EVA – was evaluated on a sample of biomedical data repositories commonly utilized by researchers at Charité Universitätsmedizin Berlin in 2021. A comparative analysis was conducted on 474 data sets, with an aggregated sample of 44 data sets from both general-purpose and discipline-specific repositories. The performance of these tools was assessed using common FAIR metrics across all tools, and their documentation and associated publications were also analyzed.

The results revealed significant discrepancies in the assessment outcomes. General-purpose repositories consistently scored higher on the examined FAIR metrics, while discipline-specific repositories underperformed, likely due to more specialized metadata requirements. Each tool demonstrated distinct strengths and weaknesses, revealing inconsistencies in how the FAIR principles are interpreted and applied. Despite some data sets performing well across multiple tools, discrepancies in the results suggested varying levels of stringency in FAIRness assessments and differences in the tools' development approaches. These evaluations also offered valuable insights into the overall FAIRness of the repositories, as data sets from the same repository tended to yield similar results. Additionally, the study explored failed outcomes, possible poor tool performance, and the challenge of comparability due to variations in scaling and weighting between tools.

These findings emphasize the need for a more standardized and unified approach to evaluating FAIR compliance to avoid the potential misuse of these assessments. The study calls for greater collaboration between stakeholders, repository agencies, and tool developers to address gaps in FAIR principles adoption, and for finding a more hybrid approach to improve assessment consistency.
Localization fom conductance in few-channel disordered wires
Creators: name: Heinrichs, J.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: We study localization in two- and three channel quasi-1D systems using multichain tight-binding Anderson models with nearest-neighbour interchain hopping. In the three chain case we discuss both the case of free- and that of periodic boundary conditions between the chains. The finite disordered wires are connected to ideal leads and the localization length is defined from the Landauer conductance in terms of the transmission coefficients matrix. The transmission- and reflection amplitudes in properly defined quantum channels are obtained from S-matrices constructed from transfer matrices in Bloch wave bases for the various quasi-1D systems. Our exact analytic expressions for localization lengths for weak disorder reduce to the Thouless expression for 1D systems in the limit of vanishing interchain hopping. For weak interchain hopping the localization length decreases with respect to the 1D value in all three cases. In the three-channel cases it increases with interchain hopping over restricted domains of large hopping.
Testing the Schwarzschild metric in a strong field region with the Event Horizon Telescope
Creators: name: Tian, S. X.
name: Zhu, Zong-Hong
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Testing gravity theory in the strong field region becomes a reality due to the observations of gravitational waves and black hole shadows. In this paper, we discuss how to constrain the possible deviations of the classical general relativity with the image of M87* observed by the Event Horizon Telescope. More precisely, we want to know where is the event horizon for a non-rotating black hole. General relativity predicts the horizon is located at the Schwarzschild radius $r_\textrm{s}$, while other gravity theories may give different predictions. We propose a parameterized Schwarzschild metric (PSM) in which the horizon is located at $r=nr_\textrm{s}$, where $n$ is a real free parameter, and prove general relativity with nonlinear electrodynamics allows $n\neq1$. In the weak field region, the PSM is equivalent to the Schwarzschild metric regardless of the value of $n$. In the strong field region, the difference between the PSM and Schwarzschild metric would leave an imprint on the shadow image. We present detailed calculations and discussions on the black hole shadows with large background light source and accretion disk in the PSM framework. More importantly, we point out that $n\approx2$ can be used to explain why the black hole mass measured by the shadow is a factor of about two larger than the previous gas dynamics measurements. If this explanation is confirmed to be right, then this phenomenon, together with the late-time cosmological acceleration, will be very important to test gravity theories.
description: 14 pages, 9 figures, PRD accepted
Profit and risk analysis of alternative no-till and conventional tillage crop rotation systems in east central South Dakota
Creators: name: McMurtry, Bronc
name: Janssen, Dr. Larry
name: Miller, Dr. Michael
name: Osborne, Dr. Shannon
name: McMurtry, Bronc
name: Janssen, Dr. Larry
name: Miller, Dr. Michael
name: Osborne, Dr. Shannon
Publisher: name: Unknown
Year: 2014
Subjects: subject: Farm Management
subject: Production Economics
subject: Risk and Uncertainty
subject: no-till crop systems risk management stochastic simulation farm management production economics

description: This study summarizes key economic results from 10 different no-till (NT) crop rotations and two conventional tillage (CT) corn-soybean rotations based on agronomic data (2001 – 2012) from a long-term crop rotation experiment conducted by the North Central Agricultural Research Laboratory located in Brookings County, which lies in the East-Central region of South Dakota. A 1200 acre model crop farm was constructed for farm management budget and simulation analyses. Results indicate: (1) the CT rotation had the highest average net returns, but higher risk were also involved, (2) several four-crop NT rotations were preferred as producer risk aversion increased, and (3) diversification is a key risk management tool.
MOESM14 of Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species
Creators: name: Maughan, Peter
name: Lee, Rebekah
name: Walstead, Rachel
name: Vickerstaff, Robert
name: Fogarty, Melissa
name: Brouwer, Cory
name: Reid, Robert
name: Jay, Jeremy
name: Wubishet Bekele
name: Jackson, Eric
name: Tinker, Nicholas
name: Langdon, Tim
name: Schlueter, Jessica
name: Jellen, Eric
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Additional file 14: Table S7. Raw read statistics for RNASeq data for A. atlantica and A. eriantha. All reads were illumina pair-end reads from standard 500â€‰bp insert libraries. The raw read files can be found in BioProjects PRJNA556794 and PRJNA546595.
Localized states in 2D semiconductors doped with magnetic impurities in quantizing magnetic field
Creators: name: Dahan, P.
name: Fleurov, V.
name: Kikoin, K.
name: Vagner, I. D.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: A theory of magnetic impurities in a 2D electron gas quantized by a strong magnetic field is formulated in terms of Friedel-Anderson theory of resonance impurity scattering. It is shown that this scattering results in an appearance of bound Landau states with zero angular moment between the Landau subbands. The resonance scattering is spin selective, and it results in a strong spin polarization of Landau states, as well as in a noticeable magnetic field dependence of the $g$ factor and the crystal field splitting of the impurity $d$ levels.
description: 12 pages, 4 figures Submitted to Physical Review B This version is edited and updated in accordance with recent experimental data
Switchgrass Lignin Regulation and Ethanol Production Cost
Creators: name: Gouzaye, Amadou
name: Epplin, Francis
name: Saha, Malay
name: Serba, Desalegn
name: Gouzaye, Amadou
name: Epplin, Francis
name: Saha, Malay
name: Serba, Desalegn
Publisher: name: Unknown
Year: 2014
Subjects: subject: Production Economics
subject: genotype
subject: lignin
subject: biomass
subject: ethanol
subject: cost
subject: feedstock
subject: enzymatic hydrolysis

description: The optimal switchgrass genotype from among 250 alternatives for producing biomass for use in an enzymatic hydrolysis conversion process to produce ethanol was determined. The consequences of the selected genotype, relative to the most common commercially available variety, on ethanol production costs and on land requirements are determined.
Additional file 9 of FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences
Creators: name: Sagnik Banerjee
name: Bhandary, Priyanka
name: Woodhouse, Margaret
name: Sen, Taner Z.
name: Wise, Roger P.
name: Andorf, Carson M.
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Artificial Intelligence and Image Processing
subject: FOS: Computer and information sciences

description: Additional file 9. Supplementary text document outlining methods and some results in more details.
Quantifying quantum coherence in a metal-silicate framework
Creators: name: Cruz, C.
name: Anka, M. F.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The study of quantum coherence in condensed matter systems is a broad avenue to be explored toward the enhancement of its quantum properties by means of material engineering. In this regard, the present work reports a study of the influence of temperature, pressure and magnetic fields on the quantum coherence of a Cu(II) metal-silicate framework. We calculate the $l_1$ trace norm quantum coherence as a function of the magnetic susceptibility of the compound, which allows us to evaluate the effects of these external parameters on the degree of coherence of the material. Our results show that the quantum coherence of a low-dimensional molecular magnetic system can be handled by the management of the external conditions, offering new prospects for quantum coherence measurements through magnetometric experiments.
Results on the symmetries of integrable fermionic models on chains
Creators: name: Dolcini, F.
name: Montorsi, A.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We investigate integrable fermionic models within the scheme of the graded Quantum Inverse Scattering Method, and prove that any symmetry imposed on the solution of the Yang-Baxter Equation reflects on the constants of motion of the model; generalizations with respect to known results are discussed. This theorem is shown to be very effective when combined with the Polynomial $\Rc$-matrix Technique (PRT): we apply both of them to the study of the extended Hubbard models, for which we find all the subcases enjoying several kinds of (super)symmetries. In particular, we derive a geometrical construction expressing any $gl(2,1)$-invariant model as a linear combination of EKS and U-supersymmetric models. Furtherly, we use the PRT to obtain 32 integrable $so(4)$-invariant models. By joint use of the Sutherland's Species technique and $η$-pairs construction we propose a general method to derive their physical features, and we provide some explicit results.
description: 25 pages, 2 figures
MOESM15 of Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species
Creators: name: Maughan, Peter
name: Lee, Rebekah
name: Walstead, Rachel
name: Vickerstaff, Robert
name: Fogarty, Melissa
name: Brouwer, Cory
name: Reid, Robert
name: Jay, Jeremy
name: Wubishet Bekele
name: Jackson, Eric
name: Tinker, Nicholas
name: Langdon, Tim
name: Schlueter, Jessica
name: Jellen, Eric
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Plant Biology
subject: Computational Biology

description: Additional file 15: Figure S7. Unabbreviated A-genome diploids rooted to the A. eriantha reference (ER_CN 19238). Accession names are abbreviated as described in Additional file 3: Table S2.
Temperature chaos in a replica symmetry broken spin glass model - A hierarchical model with temperature chaos -
Creators: name: Sasaki, M.
name: Martin, O. C.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Temperature chaos is an extreme sensitivity of the equilibrium state to a change of temperature. It arises in several disordered systems that are described by the so called scaling theory of spin glasses, while it seems to be absent in mean field models. We consider a model spin glass on a tree and show that although it has mean field behavior with replica symmetry breaking, it manifestly has ``strong'' temperature chaos. We also show why chaos appears only very slowly with system size.
description: 7 pages, 3 figures, the text is slightly changed
0-100 : About Data Curation at the Swedish University of Agricultural Sciences
Creators: name: Belin, Kerstin
name: Antonsson, Kristoffer
name: Pettersson, Karl
Publisher: name: Zenodo
Year: 2025
Subjects: Curation infrastructure: Tools, systems and services that are in development
Data curation
Data publishing
FAIR data
Archiving
Services and support
IDCC25

description: This poster describes work with data curation at the Swedish University of Agricultural Sciences (SLU), with a focus on the SND research data catalogue. SND (the Swedish National Data Service) is a national infrastructure for making research data available and FAIR, run by a consortium of Swedish higher education institutions including SLU. We recently passed the milestone of 100 curated SLU datasets published via SND. During the process from 0-100 we have contributed to the development of the data repository as well as continuously developed our routines and practices for reviewing and curating research data for sharing and archiving purposes.
MOESM13 of Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species
Creators: name: Maughan, Peter
name: Lee, Rebekah
name: Walstead, Rachel
name: Vickerstaff, Robert
name: Fogarty, Melissa
name: Brouwer, Cory
name: Reid, Robert
name: Jay, Jeremy
name: Wubishet Bekele
name: Jackson, Eric
name: Tinker, Nicholas
name: Langdon, Tim
name: Schlueter, Jessica
name: Jellen, Eric
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology

description: Additional file 13: Table S6. PacBio and Illumina sequencing read statistics. The raw read files can be found in BioProjects PRJNA546592 and PRJNA546595.
The calibration of interferometric visibilities obtained with single-mode optical interferometers. Computation of error bars and correlations
Creators: name: Perrin, G.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: I present in this paper a method to calibrate data obtained from optical and infrared interferometers. I show that correlated noises and errors need to be taken into account for a very good estimate of individual error bars but also when model fitting the data to derive meaningful model parameters whose accuracies are not overestimated. It is also shown that under conditions of high correlated noise, faint structures of the source can be detected. This point is important to define strategies of calibration for difficult programs such as exoplanet detection. The limits of validity of the assumptions on the noise statistics are discussed.
A scalable high-performance magnetic shield for Very Long Baseline Atom Interferometry
Creators: name: Wodey, E.
name: Tell, D.
name: Rasel, E. M.
name: Schlippert, D.
name: Baur, R.
name: Kissling, U.
name: Kölliker, B.
name: Lorenz, M.
name: Marrer, M.
name: Schläpfer, U.
name: Widmer, M.
name: Ufrecht, C.
name: Stuiber, S.
name: Fierlinger, P.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: Atomic Physics (physics.atom-ph)
subject: FOS: Physical sciences

description: We report on the design, construction, and characterization of a 10 m-long high-performance magnetic shield for Very Long Baseline Atom Interferometry (VLBAI). We achieve residual fields below 4 nT and longitudinal inhomogeneities below 2.5 nT/m over 8 m along the longitudinal direction. Our modular design can be extended to longer baselines without compromising the shielding performance. Such a setup constrains biases associated with magnetic field gradients to the sub-pm/$\textrm{s}^2$ level in atomic matterwave accelerometry with rubidium atoms and paves the way towards tests of the universality of free fall with atomic test masses beyond the $10^{-13}$ level.
description: 6 pages, 5 figures
Statistics, plumes and azimuthally traveling waves in ultimate Taylor-Couette turbulent vortices
Creators: name: Froitzheim, Andreas
name: Ezeta, Rodrigo
name: Huisman, Sander G.
name: Merbold, Sebastian
name: Sun, Chao
name: Lohse, Detlef
name: Egbers, Christoph
Publisher: name: arXiv
Year: 2019
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: In this paper, we experimentally study the influence of large-scale Taylor rolls on the small-scale statistics and the flow organization in fully turbulent Taylor-Couette flow {for Reynolds numbers up to $\text{Re}_S=3\times 10^5$}. The velocity field in the gap confined by coaxial and independently rotating cylinders at a radius ratio of $η=0.714$ is measured using planar {particle image velocimetry} in horizontal planes at different cylinder heights. Flow regions with and without prominent Taylor vortices are compared. We show that the local angular momentum transport (expressed in terms of a Nusselt number) mainly takes place in the regions of the vortex in- and outflow, where the radial and azimuthal velocity components are highly correlated. The efficient momentum transfer is reflected in intermittent bursts, which becomes visible in the exponential tails of the probability density functions of the local Nusselt number. In addition, by calculating azimuthal energy co-spectra, small-scale plumes are revealed to be the underlying structure of these bursts. These flow features are very similar to the one observed in Rayleigh-Bénard convection, which emphasizes the analogies of these both systems. By performing a {complex proper orthogonal decomposition}, we remarkably detect azimuthally traveling waves superimposed on the turbulent Taylor vortices, not only in the classical but also in the ultimate regime. This very large-scale flow pattern{,} which is most pronounced at the axial location of the vortex center, is similar to the well-known wavy Taylor vortex flow{,} which has comparable wave speeds, but much larger azimuthal wave numbers.
Electrons in an annealed environment: A special case of the interacting electron problem
Creators: name: Belitz, D.
name: Kirkpatrick, T. R.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: The problem of noninteracting electrons in the presence of annealed magnetic disorder, in addition to nonmagnetic quenched disorder, is considered. It is shown that the proper physical interpretation of this model is one of electrons interacting via a potential that is long-ranged in time, and that its technical analysis by means of renormalization group techniques must also be done in analogy to the interacting problem. As a result, and contrary to previous claims, the model does not simply describe a metal-insulator transition in $d=2+ε$ ($ε\ll 1$) dimensions. Rather, it describes a transition to a ferromagnetic state that, as a function of the disorder, precedes the metal-insulator transition close to $d=2$. In $d=3$, a transition from a paramagnetic metal to a paramagnetic insulator is possible.
description: 13 pp., LaTeX, 2 eps figs; final version as published
گونه شناسی معجزات پیامبر(ص) در کتاب شرف النبی واعظ خرگوشی
Creators: name: Bakhtiari, Shahla
name: Amiri, Mona
Publisher: name: figshare
Year: 2020
Subjects: subject: 160806 Social Theory
subject: FOS: Sociology
subject: History

description: در اوایل سده سوم هجری استقلال دلائل نگاری که به معجزات پیامبر(ص) میپرداخت، از سیره نگاری نشان از تحول در نگارش سیره است. این جدایی زمانی اتفاق افتاد که نیاز جامعه به دریافت و فهم معجزات پیامبر(ص) افزونتر شد. به عبارتی برای شاخص نشان دادن شخصیت پیامبر(ص) از دیگران، دلائل نگاری با هدف نگارش احوال پیامبر (ص) به عنوان صاحب شریعت، اخلاق و معجزات ایشان به سرعت رواج یافت. کتاب شرف النبی با اختصاص به معجزات پیامبر(ص) در نیمه دوم سده چهارم هجری از مهمترین آثار مدون در این حوزه است. این اثر در مقایسه با دیگر کتابهای دلائل از حجم کمتر و نظم ویژه برخوردار است. در پژوهش حاضر بوسیله منطق اکتشافی و بهره گیری از روشـهای کمی و با روش برداشت محتوایی از معجزات مطرح شده در کتاب خرگوشی، طیفی ترسیم میشود تا فرایند تمرکز و پراکندگی حاکم بر تعداد وتنوع معجزات نشان داده شود.
نتایج بررسی معجزات در کتاب خرگوشی، تمرکز روایات بر معجزات کرامتی کمالاتی را نشان میدهد. روایات معجزات تحدی طلبانه در پراکندگی بوده و توجه به معجزات نفرینی ـ مجازاتی و سپس گونه مبارزهای ـ تحدی طلبانه از کمترین درصد بسامد برخوردار است.
Control of ecological outcomes through deliberate parameter changes in a model of the gut microbiome
Creators: name: Wang, Zipeng
name: Jones, Eric W.
name: Mueller, Joshua M.
name: Carlson, Jean M.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Populations and Evolution (q-bio.PE)
subject: FOS: Biological sciences

description: The generalized Lotka-Volterra (gLV) equations are a mathematical proxy for ecological dynamics. We focus on a gLV model of the gut microbiome, in which the evolution of the gut microbial state is determined in part by pairwise inter-species interaction parameters that encode environmentally-mediated resource competition between microbes. We develop an in silico method that controls the steady-state outcome of the system by adjusting these interaction parameters. This approach is confined to a bistable region of the gLV model. The two steady states of interest are idealized as either a "healthy" or "diseased" steady state of the gut microbiome. In this method, a dimensionality reduction technique called steady-state reduction (SSR) is first used to generate a two-dimensional (2D) gLV model that approximates the high-dimensional dynamics on the 2D subspace spanned by the two steady states. Then a bifurcation analysis of the 2D model analytically determines parameter modifications that drive a disease-prone initial condition to the healthy steady state. This parameter modification of the reduced 2D model guides parameter modifications of the original high-dimensional model, resulting in a change of steady-state outcome in the high-dimensional model. This control method, called SPARC (SSR-guided parameter change), bypasses the computational challenge of directly determining parameter modifications in the original high-dimensional system. SPARC could guide the development of indirect bacteriotherapies, which seek to change microbial compositions by deliberately modifying gut environmental variables such as gut acidity or macronutrient availability.
description: main text 9 pages, 5 figures; supplement 10 pages, 2 figures
Additional file 1 of The effects of exercise and low-calorie diets compared with low-calorie diets alone on health: a protocol for systematic reviews and meta-analyses of controlled clinical trials
Creators: name: Beigrezaei, Sara
name: Yazdanpanah, Zeinab
name: Soltani, Sepideh
name: Seyede Hamide Rajaie
name: Mohseni-Takalloo, Sahar
name: Tayebeh Zohrabi
name: Kaviani, Mojtaba
name: Forbes, Scott C.
name: Baker, Julien S.
name: Salehi-Abargouei, Amin
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology

description: Additional file 1. PRISMA-P 2015 Checklist.
Linear bounds on growth of associated primes
Creators: name: Smith, Karen E.
name: Swanson, Irena
Publisher: name: arXiv
Year: 2002
Subjects: subject: Commutative Algebra (math.AC)
subject: FOS: Mathematics
subject: 13A17, 13A35

description: We find explicit bounds on the primary components and on the Castelnuovo-Mumford regularity of powers of monomial ideals. We also analyze the primary decompositions of Katzman's example.
Additional file 2 of The effects of exercise and low-calorie diets compared with low-calorie diets alone on health: a protocol for systematic reviews and meta-analyses of controlled clinical trials
Creators: name: Beigrezaei, Sara
name: Yazdanpanah, Zeinab
name: Soltani, Sepideh
name: Seyede Hamide Rajaie
name: Mohseni-Takalloo, Sahar
name: Tayebeh Zohrabi
name: Kaviani, Mojtaba
name: Forbes, Scott C.
name: Baker, Julien S.
name: Salehi-Abargouei, Amin
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology

description: Additional file 2. Search strategies used to find related publications in PubMed, Scopus and ISI web of science.