cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Sub-threshold $J/ψ$ and $Υ$ Production in $γA$ Collisions
Creators: name: Hatta, Yoshitaka
name: Strikman, Mark
name: Xu, Ji
name: Yuan, Feng
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: Nuclear Experiment (nucl-ex)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We study sub-threshold heavy quarkonium ($J/ψ$ and $Υ$) photo-productions in $γA$ collisions as an independent test of the universality of the nucleon-nucleon short range correlation (SRC) in nuclear scattering processes. Just below the $γp$ threshold, the cross section is dominated by the mean field contribution of nucleons inside the nucleus. The SRC contributions start to dominate at lower photon energies, depending on the fraction of the SRC pairs in the target nucleus. We give an estimate of the cross sections in the sub-threshold region both for $J/ψ$ and $Υ$. This may be helpful for future measurements at JLab as well as at the Electron-Ion Collider in the U.S., and especially in China.
description: 7 pages, 5 figures
Boolean analysis of lateral inhibition
Creators: name: Tonello, Elisa
name: Siebert, Heike
Publisher: name: Freie Universität Berlin
Year: 2020
Subjects: subject: Boolean networks
subject: Multi-cellular systems
subject: Cell signalling
subject: Patterns
subject: 500 Naturwissenschaften und Mathematik::570 Biowissenschaften; Biologie::570 Biowissenschaften; Biologie

description: We study Boolean networks which are simple spatial models of the highly conserved Delta–Notch system. The models assume the inhibition of Delta in each cell by Notch in the same cell, and the activation of Notch in presence of Delta in surrounding cells. We consider fully asynchronous dynamics over undirected graphs representing the neighbour relation between cells. In this framework, one can show that all attractors are fixed points for the system, independently of the neighbour relation, for instance by using known properties of simplified versions of the models, where only one species per cell is defined. The fixed points correspond to the so-called fine-grained “patterns” that emerge in discrete and continuous modelling of lateral inhibition. We study the reachability of fixed points, giving a characterisation of the trap spaces and the basins of attraction for both the full and the simplified models. In addition, we use a characterisation of the trap spaces to investigate the robustness of patterns to perturbations. The results of this qualitative analysis can complement and guide simulation-based approaches, and serve as a basis for the investigation of more complex mechanisms.
Ochthephilum cuyabanum
Creators: name: Asenjo, Angélico
name: e, Sistemática
name: de, Bioecologia
name: Coleoptera
name: Zoologia
name: Federal, Universidade
name: Cep
name: Curitiba
name: Irmler, Ulrich
name: Klimaszewski, Jan
name: Herman, Lee H.
name: Chandler, Donald S.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Ochthephilum
Ochthephilum cuyabanum

description: Ochthephilum cuyabanum (Bernhauer 1908: 324)
 Distribution. Brazil.
 Brazilian Biome. Savannah.
 Locality records. MATO GROSSO: Cuiabá Bernhauer 1908: 324. WITHOUT SPECIFIC STATE: Without specific locality Bernhauer and Schubert 1912: 281; Blackwelder 1944: 124.
description: Published as part of Asenjo, Angélico, e, Sistemática, de, Bioecologia, Coleoptera, Zoologia, Federal, Universidade, Cep, Curitiba, Irmler, Ulrich, Klimaszewski, Jan, Herman, Lee H. & Chandler, Donald S., 2013, A complete checklist with new records and geographical distribution of the rove beetles (Coleoptera, Staphylinidae) of Brazil, pp. 1-419 in Insecta Mundi 2013 (277) on page 244, DOI: 10.5281/zenodo.5184652
“I’ll Have What He’s Having”: Group Ordering Behavior in Food Choice Decisions
Creators: name: Ellison, Brenna
name: Lusk, Jayson L.
name: Ellison, Brenna
name: Lusk, Jayson L.
Publisher: name: Unknown
Year: 2013
Subjects: subject: Consumer/Household Economics
subject: Food Consumption/Nutrition/Food Safety
subject: Institutional and Behavioral Economics
subject: food decisions
subject: group ordering behavior
subject: variety-seeking vs. conformism

description: Current research has focused on whether nutrition labeling and pricing policies (i.e., soda taxes) influence food decisions; however, less attention has been given to how peers influence one’s food decisions. This study uses sales receipts from a full-service restaurant to take a closer look at how people order in groups. Results of the study revealed people may be less variety-seeking than previous research suggests; in fact, diners were more likely to seek variety when choosing an individual item, but not when choosing a menu category. In other words, diners wanted to be different from their dining companions, but not too different. This result was further confirmed with a model of food choice which shows diners derived more utility from an entrée when a fellow diner ordered an entrée in the same category. Interestingly, the presence of calorie labels on menus did not change the marginal utility of calories, suggesting peer effects may outweigh the effects of nutritional information.
Relativistic formulation of Glauber theory for A(e,e'p) reactions
Creators: name: Ryckebusch, J.
name: Debruyne, D.
name: Lava, P.
name: Janssen, S.
name: Van Overmeire, B.
name: Van Cauteren, T.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: At sufficiently large proton energies, Glauber multiple-scattering theory offers good opportunities for describing the final state interactions in electro-induced proton emission off nuclear targets. A fully unfactorized relativistic formulation of Glauber multiple-scattering theory is presented. The effect of truncating the Glauber multiple-scattering series is discussed. Relativistic effects in the description of the final-state interactions are found not to exceed the few percent level. Also the frequently adopted approximation of replacing the wave functions for the individual scattering nucleons by some average density, is observed to have a minor impact on the results. Predictions for the separated $^4$He$(e,e'p)$ response functions are given in quasi-elastic kinematics and a domain corresponding with $1 \leq Q^2 \leq 2$ (GeV)$^2$.
description: 30 pages, 12 figures
MOESM1 of Lifestyle interventions to maternal weight loss after birth: a systematic review
Creators: name: Christiansen, Pernille
name: SkjÃ¸Th, Mette
name: Rothmann, Mette
name: Vinter, Christina
name: Lamont, Ronald
name: Draborg, Eva
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Computational Biology

description: Additional file 1. Search string.
Ochthephilum cylindricum
Creators: name: Asenjo, Angélico
name: e, Sistemática
name: de, Bioecologia
name: Coleoptera
name: Zoologia
name: Federal, Universidade
name: Cep
name: Curitiba
name: Irmler, Ulrich
name: Klimaszewski, Jan
name: Herman, Lee H.
name: Chandler, Donald S.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Ochthephilum
Ochthephilum cylindricum

description: Ochthephilum cylindricum (Sharp 1876c: 220)
 Distribution. Brazil.
 Brazilian Biome. Amazon forest.
 Locality records. AMAZONAS: Tefé [Ega] Sharp 1876c: 221. Without specific locality Bernhauer and Schubert 1912: 281. WITHOUT SPECIFIC STATE: Without specific locality Blackwelder 1944: 124.
description: Published as part of Asenjo, Angélico, e, Sistemática, de, Bioecologia, Coleoptera, Zoologia, Federal, Universidade, Cep, Curitiba, Irmler, Ulrich, Klimaszewski, Jan, Herman, Lee H. & Chandler, Donald S., 2013, A complete checklist with new records and geographical distribution of the rove beetles (Coleoptera, Staphylinidae) of Brazil, pp. 1-419 in Insecta Mundi 2013 (277) on pages 244-245, DOI: 10.5281/zenodo.5184652
MOESM2 of Triple blockade of EGFR, MEK and PD-L1 has antitumor activity in colorectal cancer models with constitutive activation of MAPK signaling and PD-L1 overexpression
Creators: name: S. Napolitano
name: N. Matrone
name: A. Muddassir
name: G. Martini
name: A. Sorokin
name: V. De Falco
name: E. Giunta
name: D. Ciardiello
name: E. Martinelli
name: V. Belli
name: M. Furia
name: S. Kopetz
name: F. Morgillo
name: F. Ciardiello
name: T. Troiani
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Cancer

description: Additional file 2: Figure S2. A. Mice bearing MC38 and CT26 cells were treated continuously by oral gavage injection with vehicle or MEK inhibitor (BAY86–9766) (25 mg/kg every day for 5 days a week) (n = 8 per group). Treatments started when tumours reached volumes of 200–300 mm3. Animals were sacrificed when tumours reached 2.000 mm3 in size. Tumours from the MEK inhibitor-treated group, were removed, digested and suspended as a single cell, which were propagated in in vitro culture. B. Sensitivity of MC38, MC38-MR, CT26 and CT26-MR cells to the increasing concentrations of BAY86–9766 (0.01–10 μM) after 96 h treatment and evaluated for proliferation by MTT staining. The results are the average ± SD of three independent experiments each done in triplicate.
Observation of Dynamical Fermionization
Creators: name: Wilson, Joshua M.
name: Malvania, Neel
name: Le, Yuan
name: Zhang, Yicheng
name: Rigol, Marcos
name: Weiss, David S.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: Atomic Physics (physics.atom-ph)
subject: FOS: Physical sciences

description: We observe dynamical fermionization, where the momentum distribution of a Tonks-Girardeau (T-G) gas of strongly interacting bosons in 1D evolves from bosonic to fermionic after its axial confinement is removed. The asymptotic momentum distribution after expansion in 1D is the distribution of rapidities, which are the conserved quantities associated with many-body integrable systems. Rapidities have not previously been measured in any interacting many-body quantum system. Our measurements agree well with T-G gas theory. We also study momentum evolution after the trap depth is suddenly changed to a new non-zero value. We observe the predicted bosonic-fermionic oscillations and see deviations from the theory outside of the T-G gas limit.
Divisia monetary aggregates for a heterogeneous euro area
Creators: name: Brill, Maximilian C.
name: Nautz, Dieter
name: Sieckmann, Lea
Publisher: name: Freie Universität Berlin
Year: 2021
Subjects: subject: Monetary aggregation
subject: Euro area Divisia aggregate
subject: Recessions
subject: 300 Sozialwissenschaften::330 Wirtschaft::330 Wirtschaft

description: Since the run-up to the great recession, there has been a significant degree of heterogeneity across euro area countries both in terms of interest rates and in the composition of monetary assets. In order to account for the heterogeneity of monetary assets within and across member countries, we propose a Divisia monetary aggregate for the euro area. In line with earlier evidence obtained for the United States, our results from a panel probit analysis show that the divergence between the Divisia and the simple sum aggregate has a significant predictive content for recessions in euro area countries.
A Note on Domain Walls and the Parameter Space of N=1 Gauge Theories
Creators: name: Ritz, Adam
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We study the spectrum of BPS domain walls within the parameter space of N=1 U(N) gauge theories with adjoint matter and a cubic superpotential. Using a low energy description obtained by compactifying the theory on R^3 x S^1, we examine the wall spectrum by combining direct calculations at special points in the parameter space with insight drawn from the leading order potential between minimal walls, i.e those interpolating between adjacent vacua. We show that the multiplicity of composite BPS walls -- as characterised by the CFIV index -- exhibits discontinuities on marginal stability curves within the parameter space of the maximally confining branch. The structure of these marginal stability curves for large N appears tied to certain singularities within the matrix model description of the confining vacua.
description: 33 pages, LaTeX, 6 eps figures; v2: references added
Evaluating habitat-fishery interactions: The case of Submerged Aquatic Vegetation and Blue Crab fishery in the Chesapeake Bay
Creators: name: Mykoniatis, Nikolaos
name: Ready, Richard
name: Mykoniatis, Nikolaos
name: Ready, Richard
Publisher: name: Unknown
Year: 2013
Subjects: subject: Agribusiness
subject: Livestock Production/Industries
subject: Productivity Analysis
subject: Research Methods/ Statistical Methods
subject: empirical bioeconomics
subject: Chesapeake Bay
subject: essential and facultative habitat
subject: blue crabs
subject: Submerged Aquatic Vegetation

description: This paper investigates habitat-fisheries interaction between two important resources in the Chesapeake Bay: blue crabs and Submerged Aquatic Vegetation (SAV). A habitat can be essential to a species (the species is driven to extinction without it), facultative (more habitat means more of the species, but species can exist at some level without any of the habitat) or irrelevant (more habitat is not associated with more of the species). An empirical bioeconomic model that nests the essential-habitat model into its facultative-habitat counterpart is estimated. Two alternative approaches are used to test whether SAV matters for the crab stock. Our results indicate that, if we do not have perfect information on habitat-fisheries linkages, the right approach would be to run the more general facultative-habitat model instead of the essential-habitat one. Failure to do so can result in model misspecification and upward-biased estimates of the impact of habitat on species productivity. With our data we fail to reject the null hypothesis that SAV is irrelevant for crabs in the Bay.
MOESM1 of Triple blockade of EGFR, MEK and PD-L1 has antitumor activity in colorectal cancer models with constitutive activation of MAPK signaling and PD-L1 overexpression
Creators: name: S. Napolitano
name: N. Matrone
name: A. Muddassir
name: G. Martini
name: A. Sorokin
name: V. De Falco
name: E. Giunta
name: D. Ciardiello
name: E. Martinelli
name: V. Belli
name: M. Furia
name: S. Kopetz
name: F. Morgillo
name: F. Ciardiello
name: T. Troiani
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Hematology

description: Additional file 1: Figure S1. A. Immunofluorescence analysis of the indicate antibody followed by secondary antibody labeled with Alexa Fluor 488 in the HCT116 and HCT116 MR cells. DAPI was included to stain the nucleus. B. PD-L1 has a protective role in the nucleus. Western blot analysis was performed to evaluate Caspase 9, Caspase 3 and Bcl2 expression in HCT116 and HCT116 MR cells. C. Sensitivity of LIM1215 and LIM1215 MR cells to the increasing concentrations of BAY86–9766 (0.01–10 μM) after 96 h treatment and evaluated for proliferation by MTT staining. The results are the average ± SD of three independent experiments each done in triplicate. D. Analysis of intracellular signaling pathways by Western blot analysis in LIM1215 and LIM1215-MR cells. Total cell protein extracts (50 μg) were subjected to immunoblotting with the indicated antibodies, as described in Materials and Methods. Anti-tubulin antibody was used for normalization of protein extract content.
Zero Mach Number Limit of the Compressible Primitive Equations: Well-Prepared Initial Data
Creators: name: Liu, Xin
name: Titi, Edriss S.
Publisher: name: Freie Universität Berlin
Year: 2020
Subjects: subject: zero Mach number limit
subject: compressible primitive equations
subject: initial data without acoustic oscillations
subject: 500 Naturwissenschaften und Mathematik::510 Mathematik::510 Mathematik

description: This work concerns the zero Mach number limit of the compressible primitive equations. The primitive equations with the incompressibility condition are identified as the limiting equations. The convergence with well-prepared initial data (i.e., initial data without acoustic oscillations) is rigorously justified, and the convergence rate is shown to be of order O(ε), as ε→0+, where ε represents the Mach number. As a byproduct, we construct a class of global solutions to the compressible primitive equations, which are close to the incompressible flows.
Ochthephilum dubiosum
Creators: name: Asenjo, Angélico
name: e, Sistemática
name: de, Bioecologia
name: Coleoptera
name: Zoologia
name: Federal, Universidade
name: Cep
name: Curitiba
name: Irmler, Ulrich
name: Klimaszewski, Jan
name: Herman, Lee H.
name: Chandler, Donald S.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Ochthephilum
Ochthephilum dubiosum

description: Ochthephilum dubiosum (Bernhauer 1934a: 115)
 Distribution. Argentina, Brazil.
 Brazilian Biome. Atlantic forest.
 Locality records. RIO DE JANEIRO: Without specific locality Bernhauer 1934a: 115. WITHOUT SPECIFIC STATE: Without specific locality Blackwelder 1944: 124; Fernandez et al. 2007: 30.
description: Published as part of Asenjo, Angélico, e, Sistemática, de, Bioecologia, Coleoptera, Zoologia, Federal, Universidade, Cep, Curitiba, Irmler, Ulrich, Klimaszewski, Jan, Herman, Lee H. & Chandler, Donald S., 2013, A complete checklist with new records and geographical distribution of the rove beetles (Coleoptera, Staphylinidae) of Brazil, pp. 1-419 in Insecta Mundi 2013 (277) on page 245, DOI: 10.5281/zenodo.5184652
Vision and Language: from Visual Perception to Content Creation
Creators: name: Mei, Tao
name: Zhang, Wei
name: Yao, Ting
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: Vision and language are two fundamental capabilities of human intelligence. Humans routinely perform tasks through the interactions between vision and language, supporting the uniquely human capacity to talk about what they see or hallucinate a picture on a natural-language description. The valid question of how language interacts with vision motivates us researchers to expand the horizons of computer vision area. In particular, "vision to language" is probably one of the most popular topics in the past five years, with a significant growth in both volume of publications and extensive applications, e.g., captioning, visual question answering, visual dialog, language navigation, etc. Such tasks boost visual perception with more comprehensive understanding and diverse linguistic representations. Going beyond the progresses made in "vision to language," language can also contribute to vision understanding and offer new possibilities of visual content creation, i.e., "language to vision." The process performs as a prism through which to create visual content conditioning on the language inputs. This paper reviews the recent advances along these two dimensions: "vision to language" and "language to vision." More concretely, the former mainly focuses on the development of image/video captioning, as well as typical encoder-decoder structures and benchmarks, while the latter summarizes the technologies of visual content creation. The real-world deployment or services of vision and language are elaborated as well.
Ochthephilum femorale
Creators: name: Asenjo, Angélico
name: e, Sistemática
name: de, Bioecologia
name: Coleoptera
name: Zoologia
name: Federal, Universidade
name: Cep
name: Curitiba
name: Irmler, Ulrich
name: Klimaszewski, Jan
name: Herman, Lee H.
name: Chandler, Donald S.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Ochthephilum
Ochthephilum femorale

description: Ochthephilum femorale (Erichson 1840: 567)
 Distribution. Brazil.
 Brazilian Biome. Without sufficient data.
 Locality records. WITHOUT SPECIFIC STATE: Without specific locality Bernhauer and Schubert 1912: 282; Blackwelder 1944: 124; Erichson 1840: 567.
description: Published as part of Asenjo, Angélico, e, Sistemática, de, Bioecologia, Coleoptera, Zoologia, Federal, Universidade, Cep, Curitiba, Irmler, Ulrich, Klimaszewski, Jan, Herman, Lee H. & Chandler, Donald S., 2013, A complete checklist with new records and geographical distribution of the rove beetles (Coleoptera, Staphylinidae) of Brazil, pp. 1-419 in Insecta Mundi 2013 (277) on page 245, DOI: 10.5281/zenodo.5184652
Optical phase curve of the ultra-hot Jupiter WASP-121b
Creators: name: Bourrier, V.
name: Kitzmann, D.
name: Kuntzer, T.
name: Nascimbeni, V.
name: Lendl, M.
name: Lavie, B.
name: Hoeijmakers, H. J.
name: Pino, L.
name: Ehrenreich, D.
name: Heng, K.
name: Allart, R.
name: Cegla, H. M
name: Dumusque, X.
name: Melo, C.
name: Astudillo-Defru, N.
name: Caldwell, D. A.
name: Cretignier, M.
name: Giles, H.
name: Henze, C. E.
name: Jenkins, J.
name: Lovis, C.
name: Murgas, F.
name: Pepe, F.
name: Ricker, G. R.
name: Rose, M. E.
name: Seager, S.
name: Segransan, D.
name: Suarez-Mascareno, A.
name: Udry, S.
name: Vanderspek, R.
name: Wyttenbach, A.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: We present the analysis of TESS optical photometry of WASP-121b, which reveal the phase curve of this transiting ultra-hot Jupiter. Its hotspot is located at the substellar point, showing inefficient heat transport from the dayside (2870 K) to the nightside ($
description: 11 pages, 5 figures, submitted to A&A
MOESM1 of Determining the effects of exercise after smoking cessation therapy completion on continuous abstinence from smoking: Japanese study protocol
Creators: name: Ozaki, Yuka
name: Komiyama, Maki
name: Ueshima, Kenji
name: Iso, Hiroyasu
name: Sakata, Satoko
name: Morino, Ayumi
name: Takahara, Mitsuyoshi
name: Noguchi, Satoshi
name: Kuwabara, Yoshihiro
name: Takahashi, Yuko
name: Hasegawa, Koji
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Additional file 1: SPIRIT 2013 Checklist: Recommended items to address in a clinical trial protocol and related documents*.
Neuroinflammation causes changes to the nodes of Ranvier in Multiple Sclerosis normal-appearing white matter.
Creators: name: Gallego, Patricia
Publisher: name: Imperial College London
Year: 2019

description: Background: In addition to the focal demyelinating lesions in multiple sclerosis (MS), both imaging and neuropathological analyses have demonstrated the presence of a more diffuse pathology in both the white and grey matter, including changes to the structure of nodes of Ranvier in the normal-appearing white matter (NAWM). Objective: We have examined the expression of the paranodal axonal protein Caspr1, the voltage-gated channels Nav and Kv1.2 at nodes and juxtaparanodes respectively, and SMI32+ (dephosphorylated neurofilament) axons in NAWM areas from post-mortem progressive MS brains compared to controls. This axo-geometrical data on nodal changes was then integrated into a computational model of an axon developed with NEURON. To test our hypothesis, rats were injected into the cerebral subarachnoid space with lentiviral vectors for lymphotoxin-α and interferon-γ, and structural changes were examined 3 months later. Furthermore, a cerebellar tissue culture model was used to induce nodal pathology by the activation of microglia with TNF, interferon-γ, conditioned microglial medium and glutamate administration. Results: The paranodal domain in MS NAWM tissue was longer on average than in control and Kv1.2 channels appeared dislocated towards the paranode. These changes were associated with stressed axons and activation of microglia. When these changes were inserted into the computational model, a rapid decrease in velocity was observed as the paranodal peri-axonal space was increased, reaching conduction failure when the axons were less than 1mm of diameter. The same structural changes were observed in the corpus callosum of our rat model and were associated with microglia/astrocyte activation. TNF, interferon-γ, conditioned microglial medium and glutamate also generated paranodal elongation in the cerebellar cultures axons and was reversed/halted by an NMDA blocker. Conclusion: Microglia activated by pro-inflammatory cytokines may release high levels of glutamate, which triggers paranodal pathology in MS NAWM, contributing to axonal damage and subsequent conduction deficits.
Consumer Preference for Eggs from Enhanced Animal Welfare Production System: A Stated Choice Analysis
Creators: name: Lu, Yiqing
name: Cranfield, John
name: Widowski, Tina
name: Lu, Yiqing
name: Cranfield, John
name: Widowski, Tina
Publisher: name: Unknown
Year: 2013
Subjects: Consumer/Household Economics
Livestock Production/Industries
Public Economics

description: The first choice experiment investigated consumer preferences for different housing systems, while the second investigated consumer preferences for attributes of a housing system. Each choice experiment had two information treatments. In both treatments, a description of each housing system was provided, while in the second treatment, there was additional information regarding the consequences (in terms of effect on birds) of each housing systems based on scientific research. The results indicate that Canadian consumers are willing to pay a premium for eggs from free run and free range systems, but not for eggs from enriched cage systems. There are also positive marginal WTPs for cage-free, outdoor access, access to nests box, perches, scratching pads and more space. In both choice experiment, the WTP for enhanced animal welfare attributes are lower in treatment 2 (with additional information) than treatment 1. Consumer preference for outdoor access is quite consistent across two choice experiments.
De-novo malignancies after kidney transplantation: A long-term observational study
Creators: name: Fröhlich, Felix A.
name: Halleck, Fabian
name: Lehner, Lukas
name: Schrezenmeier, Eva V.
name: Naik, Marcel
name: Schmidt, Danilo
name: Khadzhynov, Dmytro
name: Kast, Katharina
name: Budde, Klemens
name: Staeck, Oliver
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: Carcinoma, Renal Cell
subject: Immunosuppressive Agents
subject: Lymphoproliferative Disorders
subject: Retrospective Studies
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Background: De-novo malignancies after kidney transplantation represent one major cause for mortality after transplantation. However, most of the studies are limited due to small sample size, short follow-up or lack of information about cancer specific mortality. Methods: This long-term retrospective analysis included all adult patients with complete follow-up that underwent kidney transplantation between 1995 and 2016 at our centre. All patients with diagnosis of malignancy excluding non-melanoma skin cancer (NMSC) were identified and a matched control group was assigned to the kidney transplant recipients with post-transplant malignancies. Results: 1417 patients matched the inclusion criteria. 179 malignancies posttransplant were diagnosed in 154 patients (n = 21 with two, n = 2 patients with three different malignancies). Mean age at cancer diagnosis was 60.3±13.3 years. Overall incidence of de-novo malignancies except NMSC was 1% per year posttransplant. Renal cell carcinoma was the most common entity (n = 49, incidence 4.20 per 1000 patient years; cancer specific mortality 12%), followed by cancer of the gastro-intestinal tract (n = 30, 2.57; 50%), urinary system (n = 24, 2.06; 13%), respiratory system (n = 18, 1.54; 89%), female reproductive system (n = 15, 1.29; 13%), posttransplant lymphoproliferative disorders and haematological tumours (n = 14, 1.20; 21%), cancers of unknown primary (n = 7, 0.60 100%) and others (n = 22, 1.89; 27%). Male sex, re-transplantation and time on dialysis were associated with de-novo malignancies after transplantation. Conclusion: De-novo malignancies continue to be a serious problem after kidney transplantation. To improve long-term outcome after Kidney transplantation, prevention and cancer screening should be more tailored and intensified.
Additional file 1 of Transposition of cardiovascular outcome trial effects to the real-world population of patients with type 2 diabetes
Creators: name: V. Sciannameo
name: P. Berchialla
name: A. Avogaro
name: Fadini, G. P.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Computational Biology

description: Additional file 1: Table S1. REWIND. Table S2. SUSTAIN-6. Table S3. DECLARE HHF/CVD. Table S4. DECLARE MACE. Table S5. EMPA-REG. Table S6. LEADER. Table S7. PIONEER-6. Table S8. TECOS. Table S9. SAVOR-TIMI. Table S10. EXCEL.
Test of OPE and OGE through mixing angles of negative parity N* resonances in electromagnetic transitions
Creators: name: Jun, He
name: Yubing, Dong
Publisher: name: arXiv
Year: 2003
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: In this report, by using the mixing angles of one-gluon-exchange model(OGE) and one-pion-exchange model(OPE), and by using the electromagnetic Hamiltonian of Close and Li, we calculate the amplitudes of L=1 N* resonances for photoproduction and electroproduction. The results are compared to experimental data. It's found that the data support OGE, not OPE.
description: 5 pages, Latex, 1 figure, accepted by Phys.Rev.D
Ochthephilum fuscipenne
Creators: name: Asenjo, Angélico
name: e, Sistemática
name: de, Bioecologia
name: Coleoptera
name: Zoologia
name: Federal, Universidade
name: Cep
name: Curitiba
name: Irmler, Ulrich
name: Klimaszewski, Jan
name: Herman, Lee H.
name: Chandler, Donald S.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Ochthephilum
Ochthephilum fuscipenne

description: Ochthephilum fuscipenne (Sharp 1876c: 219)
 Distribution. Brazil.
 Brazilian Biome. Amazon forest.
 Locality records. AMAZONAS: Without specific locality Bernhauer and Schubert 1912: 283; Sharp 1876c: 220. PARÁ: Without specific locality Sharp 1876c: 220. WITHOUT SPECIFIC STATE: Without specific locality Blackwelder 1944: 124.
description: Published as part of Asenjo, Angélico, e, Sistemática, de, Bioecologia, Coleoptera, Zoologia, Federal, Universidade, Cep, Curitiba, Irmler, Ulrich, Klimaszewski, Jan, Herman, Lee H. & Chandler, Donald S., 2013, A complete checklist with new records and geographical distribution of the rove beetles (Coleoptera, Staphylinidae) of Brazil, pp. 1-419 in Insecta Mundi 2013 (277) on page 245, DOI: 10.5281/zenodo.5184652
The impact of different negative training data on regulatory sequence predictions
Creators: name: Krützfeldt, Louisa-Marie
name: Schubach, Max
name: Kircher, Martin
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: A549 Cells
subject: HeLa Cells
subject: Hep G2 Cells
subject: K562 Cells
subject: MCF-7 Cells
subject: Neural Networks, Computer
subject: Regulatory Sequences, Nucleic Acid
subject: Sequence Analysis, DNA
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Regulatory regions, like promoters and enhancers, cover an estimated 5-15% of the human genome. Changes to these sequences are thought to underlie much of human phenotypic variation and a substantial proportion of genetic causes of disease. However, our understanding of their functional encoding in DNA is still very limited. Applying machine or deep learning methods can shed light on this encoding and gapped k-mer support vector machines (gkm-SVMs) or convolutional neural networks (CNNs) are commonly trained on putative regulatory sequences. Here, we investigate the impact of negative sequence selection on model performance. By training gkm-SVM and CNN models on open chromatin data and corresponding negative training dataset, both learners and two approaches for negative training data are compared. Negative sets use either genomic background sequences or sequence shuffles of the positive sequences. Model performance was evaluated on three different tasks: predicting elements active in a cell-type, predicting cell-type specific elements, and predicting elements' relative activity as measured from independent experimental data. Our results indicate strong effects of the negative training data, with genomic backgrounds showing overall best results. Specifically, models trained on highly shuffled sequences perform worse on the complex tasks of tissue-specific activity and quantitative activity prediction, and seem to learn features of artificial sequences rather than regulatory activity. Further, we observe that insufficient matching of genomic background sequences results in model biases. While CNNs achieved and exceeded the performance of gkm-SVMs for larger training datasets, gkm-SVMs gave robust and best results for typical training dataset sizes without the need of hyperparameter optimization.
Additional file 1 of Gait and balance impairments in patients with subcortical vascular cognitive impairment
Creators: name: Elhassanien, Mahmoud Ebrahim Mostafa
name: El-Heneedy, Yasser Abo Elfotoh
name: Ramadan, Kareem Mohammed
name: Kotait, Mona Ahmed
name: Elkholy, Amr
name: Elhamrawy, Mohammed Youssef
name: Bahnasy, Wafik Said
Publisher: name: figshare
Year: 2021
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1: Computerized dynamic posturography (CDP). Figure (*). The different conditions performed in the sensory organization test; (A) eyes open, surround and platform stable, (B) eyes closed, surround and platform stable, (C) eyes open, sway- referenced surround, (D) eyes open sway-referenced platform, (E) eyes closed, sway-referenced platform and (F) eyes open sway referenced surround and platform (Quoted from Massukawa Oda and Ganança, 2015).
MOESM1 of Hernia reduction following laparotomy using small stitch abdominal wall closure with and without mesh augmentation (the HULC trial): study protocol for a randomized controlled trial
Creators: name: Heger, Patrick
name: Feißt, Manuel
name: Krisam, Johannes
name: Klose, Christina
name: Dörr-Harim, Colette
name: Tenckhoff, Solveig
name: Büchler, Markus
name: Diener, Markus
name: Mihaljevic, André
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. SPIRIT 2013 checklist: recommended items to address in a clinical trial protocol and related documents.
Jellyfish: Resolving the kinematics of extreme ram-pressure stripping at $z\sim0.3$
Creators: name: Kalita, Boris S.
name: Ebeling, Harald
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We present and discuss results from the first spatially resolved kinematic study of ram-pressure stripping of a massive late-type galaxy at intermediate redshifts. Our target, the spectacular "jellyfish" galaxy A1758N\_JFG1, was previously identified as a fast-moving member of the equal-mass merger A1758N ($z=0.28$) with a star-formation rate of 48 M$_\odot$ yr$^{-1}$, far above the galaxy main sequence. IFU data obtained by us unambiguously confirm ram-pressure stripping as the physical mechanism driving the optical morphology and high star-formation rate of this system by revealing extended [\ion{O}{2}]$λ$3727Å emission up to 40 kpc (in projection) downstream, as well as an ordered radial-velocity field generated by (a) conservation of angular momentum of the interstellar gas stripped from the edge of the galactic disk and (b) drag forces exerted by the intra-cluster medium on the "tentacles" of stripped material. We find no evidence of significant nuclear activity in A1758N\_JFG1, although an AGN might, at this early stage of the stripping process, be obscured by high column densities of gas and dust near the galactic core. Finally, our exploration of possible trajectories of A1758N\_JFG1 found solutions consistent with the notions (a) that the A1758N merger proceeds along an axis that is substantially inclined with respect to the plane of the sky and (b) that A1758N\_JFG1 participated in the merger, rather than having been accreted independently from the field.
description: Accepted for publication in ApJ
Factors affecting outcome in frameless non-isocentric stereotactic radiosurgery for trigeminal neuralgia: a multicentric cohort study
Creators: name: Conti, Alfredo
name: Acker, Gueliz
name: Pontoriero, Antonio
name: Hardt, Juliane
name: Kluge, Anne
name: Cacciola, Alberto
name: Iatì, Giuseppe
name: Kufeld, Markus
name: Budach, Volker
name: Vajkoczy, Peter
name: Beltramo, Giancarlo
name: Pergolizzi, Stefano
name: Bergantin, Achille
name: Loebel, Franziska
name: Parisi, Silvana
name: Senger, Carolin
name: Romanelli, Pantaleo
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: CyberKnife
subject: Neuropathic pain
subject: Stereotactic radiosurgery
subject: Trigeminal neuralgia
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Background: Stereotactic radiosurgery (SRS) is an effective treatment for trigeminal neuralgia (TN). Nevertheless, a proportion of patients will experience recurrence and treatment-related sensory disturbances. In order to evaluate the predictors of efficacy and safety of image-guided non-isocentric radiosurgery, we analyzed the impact of trigeminal nerve volume and the nerve dose/volume relationship, together with relevant clinical characteristics. Methods: Two-hundred and ninety-six procedures were performed on 262 patients at three centers. In 17 patients the TN was secondary to multiple sclerosis (MS). Trigeminal pain and sensory disturbances were classified according to the Barrow Neurological Institute (BNI) scale. Pain-free-intervals were investigated using Kaplan Meier analyses. Univariate and multivariate Cox regression analyses were performed to identify predictors. Results: The median follow-up period was 38 months, median maximal dose 72.4 Gy, median target nerve volume 25 mm(3), and median prescription dose 60 Gy. Pain control rate (BNI I-III) at 6, 12, 24, 36, 48, and 60 months were 96.8, 90.9, 84.2, 81.4, 74.2, and 71.2%, respectively. Overall, 18% of patients developed sensory disturbances. Patients with volume ≥ 30 mm(3) were more likely to maintain pain relief (p = 0.031), and low integral dose (< 1.4 mJ) tended to be associated with more pain recurrence than intermediate (1.4-2.7 mJ) or high integral dose (> 2.7 mJ; low vs. intermediate: log-rank test, χ(2) = 5.02, p = 0.019; low vs. high: log-rank test, χ(2) = 6.026, p = 0.014). MS, integral dose, and mean dose were the factors associated with pain recurrence, while re-irradiation and MS were predictors for sensory disturbance in the multivariate analysis. Conclusions: The dose to nerve volume ratio is predictive of pain recurrence in TN, and re-irradiation has a major impact on the development of sensory disturbances after non-isocentric SRS. Interestingly, the integral dose may differ significantly in treatments using apparently similar dose and volume constraints.
Scaling relations and finite-size scaling in gravitationally correlated lattice percolation models
Creators: name: Zhu, Chen-Ping
name: Jia, Long-Tao
name: Sun, Long-Long
name: Kim, Beom Jun
name: Wang, Bing-Hong
name: Hu, Chin-Kun
name: Stanley, H. E.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Physics and Society (physics.soc-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: In some systems, the connecting probability (and thus the percolation process) between two sites depends on the geometric distance between them. To understand such process, we propose gravitationally correlated percolation models for link-adding networks on the two-dimensional lattice $G$ with two strategies $S_{\rm max}$ and $S_{\rm min}$, to add a link $l_{i,j}$ to connect site $i$ and site $j$ with mass $m_i$ and $m_j$, respectively; $m_i$ and $m_j$ are sizes of the clusters which contain site $i$ and site $j$, respectively. The probability to add the link $l_{i,j}$ is related to the generalized gravity $g_{ij} \equiv m_i m_j/r_{ij}^d$, where $r_{ij}$ is the geometric distance between $i$ and $j$, and $d$ is an adjustable decaying exponent. In the beginning of the simulation, all sites of $G$ are occupied and there is no link. In the simulation process, two inter-cluster links $l_{i,j}$ and $l_{k,n}$ are randomly chosen and the generalized gravities $g_{ij}$ and $g_{kn}$ are computed. In the strategy $S_{\rm max}$, the link with larger generalized gravity is added. In the strategy $S_{\rm min}$, the link with smaller generalized gravity is added, which include percolation on the Erd\H os-Rényi random graph and the Achlioptas process of explosive percolation as the limiting cases, $d \to \infty$ and $d \to 0$, respectively. Adjustable strategies facilitate or inhibit the network percolation in a generic view. We calculate percolation thresholds $T_c$ and critical exponents $β$ by numerical simulations. We also obtain various finite-size scaling functions for the node fractions in percolating clusters or arrival of saturation length with different intervening strategies.
description: 26 pages, 8 figures, Chinese Journal of Physics, accepted for publication
Additional file 1 of Genetic and immunologic findings in children with recurrent aphthous stomatitis with systemic inflammation
Creators: name: Girardelli, Martina
name: Valencic, Erica
name: Moressa, Valentina
name: Margagliotta, Roberta
name: Tesser, Alessandra
name: Pastore, Serena
name: Spadola, Ottavia
name: Athanasakis, Emmanouil
name: Severini, Giovanni Maria
name: Taddio, Andrea
name: Tommasini, Alberto
Publisher: name: figshare
Year: 2021
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 1.
Ochthephilum klimai
Creators: name: Asenjo, Angélico
name: e, Sistemática
name: de, Bioecologia
name: Coleoptera
name: Zoologia
name: Federal, Universidade
name: Cep
name: Curitiba
name: Irmler, Ulrich
name: Klimaszewski, Jan
name: Herman, Lee H.
name: Chandler, Donald S.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Ochthephilum
Ochthephilum klimai

description: Ochthephilum klimai (Bernhauer 1908: 319)
 Distribution. Brazil.
 Brazilian Biome. Atlantic forest.
 Locality records. RIO DE JANEIRO: Petrópolis Bernhauer 1908: 320. WITHOUT SPECIFIC STATE: Without specific locality Bernhauer and Schubert 1912: 284; Blackwelder 1944: 124.
description: Published as part of Asenjo, Angélico, e, Sistemática, de, Bioecologia, Coleoptera, Zoologia, Federal, Universidade, Cep, Curitiba, Irmler, Ulrich, Klimaszewski, Jan, Herman, Lee H. & Chandler, Donald S., 2013, A complete checklist with new records and geographical distribution of the rove beetles (Coleoptera, Staphylinidae) of Brazil, pp. 1-419 in Insecta Mundi 2013 (277) on page 245, DOI: 10.5281/zenodo.5184652
Next-to-next-to-leading order soft-gluon corrections in top quark hadroproduction
Creators: name: Kidonakis, Nikolaos
name: Vogt, Ramona
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We calculate next-to-next-to-leading order soft-gluon corrections to top quark total and differential cross sections in hadron colliders. We increase the accuracy of our previous estimates by including additional subleading terms, including next-to-next-to-next-to-leading-logarithmic and some virtual terms. We show that the kinematics dependence of the cross section vanishes near threshold and is reduced away from it. The factorization and renormalization scale dependence of the cross section is also greatly reduced. We present results for the top quark total cross sections and transverse momentum distributions at the Tevatron and the LHC.
description: 22 pages, 10 figures
Ochthephilum laticolle
Creators: name: Asenjo, Angélico
name: e, Sistemática
name: de, Bioecologia
name: Coleoptera
name: Zoologia
name: Federal, Universidade
name: Cep
name: Curitiba
name: Irmler, Ulrich
name: Klimaszewski, Jan
name: Herman, Lee H.
name: Chandler, Donald S.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Ochthephilum
Ochthephilum laticolle

description: Ochthephilum laticolle (Sharp 1876c: 221)
 Distribution. Brazil.
 Brazilian Biome. Amazon forest.
 Locality records. AMAZONAS: Tefé [Ega] Sharp 1876c: 221. Without specific locality Bernhauer and Schubert 1912: 284. WITHOUT SPECIFIC STATE: Without specific locality Blackwelder 1944: 124.
description: Published as part of Asenjo, Angélico, e, Sistemática, de, Bioecologia, Coleoptera, Zoologia, Federal, Universidade, Cep, Curitiba, Irmler, Ulrich, Klimaszewski, Jan, Herman, Lee H. & Chandler, Donald S., 2013, A complete checklist with new records and geographical distribution of the rove beetles (Coleoptera, Staphylinidae) of Brazil, pp. 1-419 in Insecta Mundi 2013 (277) on page 245, DOI: 10.5281/zenodo.5184652
MOESM4 of Protein profiling and network enrichment analysis in individuals before and after the onset of rheumatoid arthritis
Creators: name: Brink, Mikael
name: Lundquist, Anders
name: Alexeyenko, Andrey
name: Lejon, Kristina
name: Rantapää-Dahlqvist, Solbritt
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Plant Biology
subject: Computational Biology

description: Additional file 4: Figure S2. Expression levels (log base 2) of the 19 distinct proteins identified via 21 antibodies from the lists of the ten most significant proteins in the three two-level linear models contrasts. The graph display the individuals’ values for controls, pre-symptomatic individuals and patients (depicted as 0, 1 or 2) across the time of sampling, expressed in years before symptom onset. Because controls do not have any date of symptom onset, they were assigned normally distributed random time values, always lower than the earliest pre-symptomatic sample. P-values estimate the significance of differences from the respective 2-level contrasts in multifactorial linear models models. FCs are log base 2-fold change values of protein expression, where positive numbers correspond to higher expression in the rightmost group.