cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Macrorhynchia grandis Clarke 1879
Creators: name: OLIVEIRA, OTTO M. P.
name: MIRANDA, THAÍS P.
name: ARAUJO, ENILMA M.
name: AYÓN, PATRICIA
name: CEDEÑO-POSSO, CRISTINA M.
name: CEPEDA-MERCADO, AMANCAY A.
name: CÓRDOVA, PABLO
name: CUNHA, AMANDA F.
name: GENZANO, GABRIEL N.
name: HADDAD, MARIA ANGÉLICA
name: MIANZAN, HERMES W.
name: MIGOTTO, ALVARO E.
name: MIRANDA, LUCÍLIA S.
name: MORANDINI, ANDRÉ C.
name: NAGATA, RENATO M.
name: NASCIMENTO, KARINE B.
name: JÚNIOR, MIODELI NOGUEIRA
name: PALMA, SERGIO
name: QUIÑONES, JAVIER
name: RODRIGUEZ, CAROLINA S.
name: SCARABINO, FABRIZIO
name: SCHIARITI, AGUSTÍN
name: STAMPAR, SÉRGIO N.
name: TRONOLONE, VALQUÍRIA B.
name: MARQUES, ANTONIO C.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Cnidaria
Hydrozoa
Leptothecata
Aglaopheniidae
Macrorhynchia
Macrorhynchia grandis

description: Macrorhynchia grandis (Clarke, 1879)
Synonyms in the area: Lytocarpus grandis —Versluys 1899 [polyp].
Distribution in South America: polyp—Atlantic Ocean, Venezuela, at Los Testigos Island; Brazil, at 22.87°S 41.94°W (Versluys 1899; Miranda et al. 2015).
Habitat: polyp—up to 80m depth (Versluys 1899; Miranda et al. 2015).
description: Published as part of OLIVEIRA, OTTO M. P., MIRANDA, THAÍS P., ARAUJO, ENILMA M., AYÓN, PATRICIA, CEDEÑO-POSSO, CRISTINA M., CEPEDA-MERCADO, AMANCAY A., CÓRDOVA, PABLO, CUNHA, AMANDA F., GENZANO, GABRIEL N., HADDAD, MARIA ANGÉLICA, MIANZAN, HERMES W., MIGOTTO, ALVARO E., MIRANDA, LUCÍLIA S., MORANDINI, ANDRÉ C., NAGATA, RENATO M., NASCIMENTO, KARINE B., JÚNIOR, MIODELI NOGUEIRA, PALMA, SERGIO, QUIÑONES, JAVIER, RODRIGUEZ, CAROLINA S., SCARABINO, FABRIZIO, SCHIARITI, AGUSTÍN, STAMPAR, SÉRGIO N., TRONOLONE, VALQUÍRIA B. & MARQUES, ANTONIO C., 2016, Census of Cnidaria (Medusozoa) and Ctenophora from South American marine waters, pp. 1-256 in Zootaxa 4194 (1) on page 102, DOI: 10.11646/zootaxa.4194.1.1, http://zenodo.org/record/10068449
Additional file 6 of Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions
Creators: name: Brown, Colin
name: Viswanadham Sridhara
name: Boutz, Daniel
name: Person, Maria
name: Marcotte, Edward
name: Barrick, Jeffrey
name: Wilke, Claus
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Inorganic Chemistry
subject: Plant Biology
subject: 60506 Virology

description: Temporally variable modification for individual proteins with an N-terminal threonine possessing a +42 Da modification. The plots show unmodified (green) and +42 Da Modified (blue) PSM counts across all nine timepoints (x-axis) for the N-terminal position of all proteins that have both (i) at least one PSM identified by MODa as containing an N-terminal +42 Da modification and (ii) having a penultimate threonine (AA position 2; i.e. the N-terminal residue following N-terminal methionine cleavage). Counts represent the average of the three biological replicates. Plots are ordered from top to bottom by the mean p value of the Fisherâ  s exact test for preferential modification (see text) from top to bottom, with the most significant protein at the top. (PDF 17 kb)
MOESM7 of Broad and flexible stable isotope niches in invasive non-native Rattus spp. in anthropogenic and natural habitats of central eastern Madagascar
Creators: name: Dammhahn, Melanie
name: Toky Randriamoria
name: Goodman, Steven
Publisher: name: Figshare
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Inorganic Chemistry
subject: Computational Biology

description: Additional file 7: Table S6. Results of univariate LMMs for Î´13C and Î´15N of Rattus rattus sampled in Ambalafary, Antsahatsaka, Besakay, and Sahavarina.
Macrorhynchia philippina Kirchenpauer 1872
Creators: name: OLIVEIRA, OTTO M. P.
name: MIRANDA, THAÍS P.
name: ARAUJO, ENILMA M.
name: AYÓN, PATRICIA
name: CEDEÑO-POSSO, CRISTINA M.
name: CEPEDA-MERCADO, AMANCAY A.
name: CÓRDOVA, PABLO
name: CUNHA, AMANDA F.
name: GENZANO, GABRIEL N.
name: HADDAD, MARIA ANGÉLICA
name: MIANZAN, HERMES W.
name: MIGOTTO, ALVARO E.
name: MIRANDA, LUCÍLIA S.
name: MORANDINI, ANDRÉ C.
name: NAGATA, RENATO M.
name: NASCIMENTO, KARINE B.
name: JÚNIOR, MIODELI NOGUEIRA
name: PALMA, SERGIO
name: QUIÑONES, JAVIER
name: RODRIGUEZ, CAROLINA S.
name: SCARABINO, FABRIZIO
name: SCHIARITI, AGUSTÍN
name: STAMPAR, SÉRGIO N.
name: TRONOLONE, VALQUÍRIA B.
name: MARQUES, ANTONIO C.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Cnidaria
Hydrozoa
Leptothecata
Aglaopheniidae
Macrorhynchia
Macrorhynchia philippina

description: Macrorhynchia philippina Kirchenpauer, 1872
Synonyms in the area: Lytocarpus philippinus —Nutting 1900; Fraser 1938a, 1938b, 1948; Vervoort 1967; Wedler 1975; Bandel & Wedler 1987 [polyp].
Distribution in South America: polyp—Pacific Ocean, Colombia, at 5.99°N 77.36°W in Port Utria, at 2.99°N 78.199°W in Gorgona Island, Ecuador, at 0.56°N 80.01°W in San Francisco Bay, from 0.39°N to 1.5°S in Galápagos Archipelago, at 1.28°S 81.07°W in Isla La Plata, at 2.18°S 80.90°W in La Libertad, at 2.19°S 80.90°W in Santa Elena Bay (Fraser 1938a, 1938b, 1948; Calder et al. 2003); Atlantic Ocean, Colombia, at Santa Marta coast, Venezuela, at Puerto Cabello, Brazil, at 3.54°S 38.8°W, from 8.05°S to 10°S, from 11.50°S to 29.5°S (Nutting 1900; Vannucci Mendes 1946; Vannucci 1949, 1951a, 1954; Vervoort 1967; Wedler 1975; Bandel & Wedler 1987; Migotto 1996; Nogueira et al. 1997; Calder & Maÿal 1998; Migotto et al. 2002; Oliveira 2003; Miranda & Marques 2006, abstract; Oliveira et al. 2006; Oliveira & Marques 2007, 2011; Maronna et al. 2008, abstract; Amaral et al. 2010b; Silveira & Morandini 2011; Miranda et al. 2011, 2015; Marques et al. 2013; Lindner et al. 2014; Fernandez et al. 2015).
Habitat: polyp—from intertidal zone to 37m depth, on algae, fouling, mud, Rhizophora mangle roots, rocks, shells, wood (Fraser 1938a, 1938b, 1948; Vannucci Mendes 1946; Bandel & Wedler 1987; Migotto 1996; Calder & Maÿal 1998; Calder et al. 2003; Oliveira 2003; Oliveira et al. 2006; Oliveira & Marques 2007, 2011; Miranda et al. 2011; Fernandez et al. 2015).
description: Published as part of OLIVEIRA, OTTO M. P., MIRANDA, THAÍS P., ARAUJO, ENILMA M., AYÓN, PATRICIA, CEDEÑO-POSSO, CRISTINA M., CEPEDA-MERCADO, AMANCAY A., CÓRDOVA, PABLO, CUNHA, AMANDA F., GENZANO, GABRIEL N., HADDAD, MARIA ANGÉLICA, MIANZAN, HERMES W., MIGOTTO, ALVARO E., MIRANDA, LUCÍLIA S., MORANDINI, ANDRÉ C., NAGATA, RENATO M., NASCIMENTO, KARINE B., JÚNIOR, MIODELI NOGUEIRA, PALMA, SERGIO, QUIÑONES, JAVIER, RODRIGUEZ, CAROLINA S., SCARABINO, FABRIZIO, SCHIARITI, AGUSTÍN, STAMPAR, SÉRGIO N., TRONOLONE, VALQUÍRIA B. & MARQUES, ANTONIO C., 2016, Census of Cnidaria (Medusozoa) and Ctenophora from South American marine waters, pp. 1-256 in Zootaxa 4194 (1) on page 102, DOI: 10.11646/zootaxa.4194.1.1, http://zenodo.org/record/10068449
MOESM8 of Broad and flexible stable isotope niches in invasive non-native Rattus spp. in anthropogenic and natural habitats of central eastern Madagascar
Creators: name: Dammhahn, Melanie
name: Toky Randriamoria
name: Goodman, Steven
Publisher: name: Figshare
Year: 2017
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Inorganic Chemistry
subject: Computational Biology

description: Additional file 8: Table S7. Raw stable carbon and nitrogen data of soil samples.
Glyphipterix synarma Meyrick 1909
Creators: name: Joshi, Rahul
name: Farooqui, Shahabab A.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Glyphipterigidae
Glyphipterix
Glyphipterix synarma

description: 18. Glyphipterix synarma Meyrick, 1909: 431
TL: Khasi hills, (now in Meghalaya) (Lectotype, ♂, NHMUK)
= Glyphipteryx [sic] synarma Meyrick, 1909: 431
Distribution. Indian records: Meghalaya. Global records: not known.
description: Published as part of Joshi, Rahul, Farooqui, Shahabab A. & Singh, Navneet, 2024, A catalogue of the Yponomeutoidea of India (Lepidoptera), pp. 468-504 in Zootaxa 5468 (3) on page 484, DOI: 10.11646/zootaxa.5468.3.4, http://zenodo.org/record/12189239
Nonlinear valley selection rules and all-optical probe of broken time-reversal symmetry in monolayer WSe2
Creators: name: Herrmann, Paul
name: Klimmer, Sebastian
name: Lettau, Thomas
name: Weickhardt, Till
name: Papavasileiou, Anastasios
name: Mosina, Kseniia
name: Sofer, Zdeněk
name: Paradisanos, Ioannis
name: Kartashov, Daniil
name: Wilhelm, Jan
name: Soavi, Giancarlo
Publisher: name: Universität Regensburg
Year: 2025
Subjects: subject: 530 Physik

description: In monolayer transition metal dichalcogenides, time-reversal symmetry—combined with broken space-inversion symmetry—defines the spin–valley degree of freedom. As such, the engineering and control of time-reversal symmetry by optical or magnetic fields constitutes the foundation of valleytronics. Here we propose a new approach for the detection of broken time-reversal symmetry and valley imbalance in monolayer WSe2 based on second-harmonic generation. At room temperature, our method can selectively probe a net valley imbalance generated by ultrafast, coherent and valley-exclusive optical Stark and Bloch–Siegert effects. This work demonstrates the potential and unique capabilities of nonlinear optics as a probe of broken time-reversal symmetry as well as a tool for ultrafast and non-destructive valleytronic operations.
Additional file 6 of Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions
Creators: name: Brown, Colin
name: Viswanadham Sridhara
name: Boutz, Daniel
name: Person, Maria
name: Marcotte, Edward
name: Barrick, Jeffrey
name: Wilke, Claus
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Inorganic Chemistry
subject: Plant Biology
subject: Virology

description: Temporally variable modification for individual proteins with an N-terminal threonine possessing a +42 Da modification. The plots show unmodified (green) and +42 Da Modified (blue) PSM counts across all nine timepoints (x-axis) for the N-terminal position of all proteins that have both (i) at least one PSM identified by MODa as containing an N-terminal +42 Da modification and (ii) having a penultimate threonine (AA position 2; i.e. the N-terminal residue following N-terminal methionine cleavage). Counts represent the average of the three biological replicates. Plots are ordered from top to bottom by the mean p value of the Fisherâ  s exact test for preferential modification (see text) from top to bottom, with the most significant protein at the top. (PDF 17 kb)
Streptocaulus pulcherrimus Allman 1883
Creators: name: OLIVEIRA, OTTO M. P.
name: MIRANDA, THAÍS P.
name: ARAUJO, ENILMA M.
name: AYÓN, PATRICIA
name: CEDEÑO-POSSO, CRISTINA M.
name: CEPEDA-MERCADO, AMANCAY A.
name: CÓRDOVA, PABLO
name: CUNHA, AMANDA F.
name: GENZANO, GABRIEL N.
name: HADDAD, MARIA ANGÉLICA
name: MIANZAN, HERMES W.
name: MIGOTTO, ALVARO E.
name: MIRANDA, LUCÍLIA S.
name: MORANDINI, ANDRÉ C.
name: NAGATA, RENATO M.
name: NASCIMENTO, KARINE B.
name: JÚNIOR, MIODELI NOGUEIRA
name: PALMA, SERGIO
name: QUIÑONES, JAVIER
name: RODRIGUEZ, CAROLINA S.
name: SCARABINO, FABRIZIO
name: SCHIARITI, AGUSTÍN
name: STAMPAR, SÉRGIO N.
name: TRONOLONE, VALQUÍRIA B.
name: MARQUES, ANTONIO C.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Cnidaria
Hydrozoa
Leptothecata
Aglaopheniidae
Streptocaulus
Streptocaulus pulcherrimus

description: ? Streptocaulus pulcherrimus Allman, 1883
Remarks: according to Calder et al. (2003), the records of the species outside the eastern Atlantic Ocean are doubtful.
Distribution in South America: polyp—Pacific Ocean, Ecuador, from 0.3°S to 1.5°S in Galápagos Archipelago (Fraser 1938a, 1938b, 1948; Calder et al. 2003).
Habitat: polyp—from 37 to 146m depth (Fraser 1938a, 1938b, 1948; Calder et al. 2003).
description: Published as part of OLIVEIRA, OTTO M. P., MIRANDA, THAÍS P., ARAUJO, ENILMA M., AYÓN, PATRICIA, CEDEÑO-POSSO, CRISTINA M., CEPEDA-MERCADO, AMANCAY A., CÓRDOVA, PABLO, CUNHA, AMANDA F., GENZANO, GABRIEL N., HADDAD, MARIA ANGÉLICA, MIANZAN, HERMES W., MIGOTTO, ALVARO E., MIRANDA, LUCÍLIA S., MORANDINI, ANDRÉ C., NAGATA, RENATO M., NASCIMENTO, KARINE B., JÚNIOR, MIODELI NOGUEIRA, PALMA, SERGIO, QUIÑONES, JAVIER, RODRIGUEZ, CAROLINA S., SCARABINO, FABRIZIO, SCHIARITI, AGUSTÍN, STAMPAR, SÉRGIO N., TRONOLONE, VALQUÍRIA B. & MARQUES, ANTONIO C., 2016, Census of Cnidaria (Medusozoa) and Ctenophora from South American marine waters, pp. 1-256 in Zootaxa 4194 (1) on page 103, DOI: 10.11646/zootaxa.4194.1.1, http://zenodo.org/record/10068449
Additional file 5 of Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions
Creators: name: Brown, Colin
name: Viswanadham Sridhara
name: Boutz, Daniel
name: Person, Maria
name: Marcotte, Edward
name: Barrick, Jeffrey
name: Wilke, Claus
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Inorganic Chemistry
subject: Virology

description: Modified and unmodified PSM counts for each AA position with a C-terminal +129 Da modification across all timepoints. The plots show unmodified (green) and +129 Da modified (purple) PSM counts across all nine timepoints (x-axis) for the C-terminal position of the two proteins that have at least one PSM identified by MODa as containing a C-terminal +129 Da modification. Counts represent the average of the three biologcial replicates. (PDF 14 kb)
Glyphipterix tripedila Meyrick 1912
Creators: name: Joshi, Rahul
name: Farooqui, Shahabab A.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Glyphipterigidae
Glyphipterix
Glyphipterix tripedila

description: 19. Glyphipterix tripedila Meyrick, 1912: 58
TL: Khasi hills (now in Meghalaya) (Holotype, ♂, NHMUK)
Distribution. Indian records: Meghalaya. Global records: China (Taiwan).
description: Published as part of Joshi, Rahul, Farooqui, Shahabab A. & Singh, Navneet, 2024, A catalogue of the Yponomeutoidea of India (Lepidoptera), pp. 468-504 in Zootaxa 5468 (3) on page 484, DOI: 10.11646/zootaxa.5468.3.4, http://zenodo.org/record/12189239
Additional file 8 of Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions
Creators: name: Brown, Colin
name: Viswanadham Sridhara
name: Boutz, Daniel
name: Person, Maria
name: Marcotte, Edward
name: Barrick, Jeffrey
name: Wilke, Claus
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Plant Biology
subject: 60506 Virology

description: Modified and unmodified PSM counts for each AA position with a significantly stationary-phase biased +1 Da modification to asparagine. The plots show unmodified (green) and +1 Da modified (brown) PSM counts across all nine timepoints (x-axis) for the 10 asparagine residues with the most significant p-values across all three biological replicates. Counts represent the average of the three biologcial replicates. Plots are ordered by the mean p value of the Fisherâ  s exact test for preferential modification from left-to-right within each row, and from top-to-bottom across rows, with the most significant position at the top left. (PDF 20 kb)
LOGISTIK YONDASHUVLAR ASOSIDA TASHILAYOTGAN YUKLARNI TASHISH ISHINI SAMARALI TASHKIL ETISH
Creators: name: Sharipov, Umrzoq
Publisher: name: Zenodo
Year: 2025

description: Ushbu ishda logistik yondashuvlar asosida yuk tashishni samarali tashkil etish masalalari ko‘rib chiqiladi. Tahlillar shuni ko‘rsatadiki, zamonaviy logistika tizimlaridan foydalanish yuk tashish jarayonining har bir bosqichini optimallashtirishga imkon beradi. Ishda yuklarni tashish jarayonini rejalashtirish, transport vositalaridan samarali foydalanish va xarajatlarni kamaytirish bo‘yicha tavsiyalar ishlab chiqilgan.
Additional file 7 of Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions
Creators: name: Brown, Colin
name: Viswanadham Sridhara
name: Boutz, Daniel
name: Person, Maria
name: Marcotte, Edward
name: Barrick, Jeffrey
name: Wilke, Claus
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Plant Biology
subject: 60506 Virology

description: Fraction of total peptides across timepoints with an N-terminal alanine possessing a +42 Da modification. The plots show unmodified (green) and +42 Da modified (blue) PSM counts across all nine timepoints (x-axis) for the N-terminal position of all proteins that have both (i) at least one PSM identified by MODa as containing an N-terminal +42 Da modification and (ii) having a penultimate Alanine (AA position 2; i.e. the N-terminal residue following N-terminal methionine cleavage). Counts represent the average of the three biologcial replicates. Plots are ordered from top to bottom by the mean p value of the Fisherâ  s exact test for preferential modification (see text) from top to bottom, with the most significant protein at the top. (PDF 17 kb)
Macrorhynchia racemifera Allman 1883
Creators: name: OLIVEIRA, OTTO M. P.
name: MIRANDA, THAÍS P.
name: ARAUJO, ENILMA M.
name: AYÓN, PATRICIA
name: CEDEÑO-POSSO, CRISTINA M.
name: CEPEDA-MERCADO, AMANCAY A.
name: CÓRDOVA, PABLO
name: CUNHA, AMANDA F.
name: GENZANO, GABRIEL N.
name: HADDAD, MARIA ANGÉLICA
name: MIANZAN, HERMES W.
name: MIGOTTO, ALVARO E.
name: MIRANDA, LUCÍLIA S.
name: MORANDINI, ANDRÉ C.
name: NAGATA, RENATO M.
name: NASCIMENTO, KARINE B.
name: JÚNIOR, MIODELI NOGUEIRA
name: PALMA, SERGIO
name: QUIÑONES, JAVIER
name: RODRIGUEZ, CAROLINA S.
name: SCARABINO, FABRIZIO
name: SCHIARITI, AGUSTÍN
name: STAMPAR, SÉRGIO N.
name: TRONOLONE, VALQUÍRIA B.
name: MARQUES, ANTONIO C.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Cnidaria
Hydrozoa
Leptothecata
Aglaopheniidae
Macrorhynchia
Macrorhynchia racemifera

description: Macrorhynchia racemifera (Allman, 1883)
Synonyms in the area: Lytocarpus racemiferus Allman, 1883; Nutting 1900 [polyp].
Distribution in South America: polyp—Atlantic Ocean, Brazil, from 11.50°S to 18.25°S (Allman 1883; Nutting 1900; Vannucci 1951a; Marques & Moretzsohn 1995; Migotto et al. 2002).
Habitat: polyp—from 18 to 36m depth (Allman 1883; Nutting 1900).
description: Published as part of OLIVEIRA, OTTO M. P., MIRANDA, THAÍS P., ARAUJO, ENILMA M., AYÓN, PATRICIA, CEDEÑO-POSSO, CRISTINA M., CEPEDA-MERCADO, AMANCAY A., CÓRDOVA, PABLO, CUNHA, AMANDA F., GENZANO, GABRIEL N., HADDAD, MARIA ANGÉLICA, MIANZAN, HERMES W., MIGOTTO, ALVARO E., MIRANDA, LUCÍLIA S., MORANDINI, ANDRÉ C., NAGATA, RENATO M., NASCIMENTO, KARINE B., JÚNIOR, MIODELI NOGUEIRA, PALMA, SERGIO, QUIÑONES, JAVIER, RODRIGUEZ, CAROLINA S., SCARABINO, FABRIZIO, SCHIARITI, AGUSTÍN, STAMPAR, SÉRGIO N., TRONOLONE, VALQUÍRIA B. & MARQUES, ANTONIO C., 2016, Census of Cnidaria (Medusozoa) and Ctenophora from South American marine waters, pp. 1-256 in Zootaxa 4194 (1) on page 103, DOI: 10.11646/zootaxa.4194.1.1, http://zenodo.org/record/10068449
Glyphipterix xyridota
Creators: name: Joshi, Rahul
name: Farooqui, Shahabab A.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Glyphipterigidae
Glyphipterix
Glyphipterix xyridota

description: 20. Glyphipterix xyridota (Meyrick, 1918): 194
TL: Shillong [Meghalaya] (Holotype, ♂, NHMUK)
Distribution. Indian records: Meghalaya (Shillong). Global records: not known.
description: Published as part of Joshi, Rahul, Farooqui, Shahabab A. & Singh, Navneet, 2024, A catalogue of the Yponomeutoidea of India (Lepidoptera), pp. 468-504 in Zootaxa 5468 (3) on page 484, DOI: 10.11646/zootaxa.5468.3.4, http://zenodo.org/record/12189239
MOESM9 of Broad and flexible stable isotope niches in invasive non-native Rattus spp. in anthropogenic and natural habitats of central eastern Madagascar
Creators: name: Dammhahn, Melanie
name: Toky Randriamoria
name: Goodman, Steven
Publisher: name: Figshare
Year: 2017
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Plant Biology
subject: Computational Biology

description: Additional file 9: Table S8. Raw stable carbon and nitrogen data of plant samples.
Ussara Walker 1864
Creators: name: Joshi, Rahul
name: Farooqui, Shahabab A.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Glyphipterigidae
Ussara

description: Genus Ussara Walker, 1864: 800
TS: Ussara decoratella Walker, 1864: 801, by monotypy
description: Published as part of Joshi, Rahul, Farooqui, Shahabab A. & Singh, Navneet, 2024, A catalogue of the Yponomeutoidea of India (Lepidoptera), pp. 468-504 in Zootaxa 5468 (3) on page 484, DOI: 10.11646/zootaxa.5468.3.4, http://zenodo.org/record/12189239
Halopterididae
Creators: name: OLIVEIRA, OTTO M. P.
name: MIRANDA, THAÍS P.
name: ARAUJO, ENILMA M.
name: AYÓN, PATRICIA
name: CEDEÑO-POSSO, CRISTINA M.
name: CEPEDA-MERCADO, AMANCAY A.
name: CÓRDOVA, PABLO
name: CUNHA, AMANDA F.
name: GENZANO, GABRIEL N.
name: HADDAD, MARIA ANGÉLICA
name: MIANZAN, HERMES W.
name: MIGOTTO, ALVARO E.
name: MIRANDA, LUCÍLIA S.
name: MORANDINI, ANDRÉ C.
name: NAGATA, RENATO M.
name: NASCIMENTO, KARINE B.
name: JÚNIOR, MIODELI NOGUEIRA
name: PALMA, SERGIO
name: QUIÑONES, JAVIER
name: RODRIGUEZ, CAROLINA S.
name: SCARABINO, FABRIZIO
name: SCHIARITI, AGUSTÍN
name: STAMPAR, SÉRGIO N.
name: TRONOLONE, VALQUÍRIA B.
name: MARQUES, ANTONIO C.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Cnidaria
Hydrozoa
Leptothecata
Halopterididae

description: FAMILY HALOPTERIDIDAE MILLARD, 1962
Antennella avalonia Torrey, 1902
Distribution in South America: polyp—Pacific Ocean, Colombia, at 5.99°N 77.36°W in Port Utria, Ecuador, from 0.2°N to 1.1°S in Isla Isabela (Fraser 1938b, 1948; Calder et al. 2003).
Habitat: polyp—on wall, from 3.5 to 13m depth (Fraser 1938b; Calder et al. 2003).
description: Published as part of OLIVEIRA, OTTO M. P., MIRANDA, THAÍS P., ARAUJO, ENILMA M., AYÓN, PATRICIA, CEDEÑO-POSSO, CRISTINA M., CEPEDA-MERCADO, AMANCAY A., CÓRDOVA, PABLO, CUNHA, AMANDA F., GENZANO, GABRIEL N., HADDAD, MARIA ANGÉLICA, MIANZAN, HERMES W., MIGOTTO, ALVARO E., MIRANDA, LUCÍLIA S., MORANDINI, ANDRÉ C., NAGATA, RENATO M., NASCIMENTO, KARINE B., JÚNIOR, MIODELI NOGUEIRA, PALMA, SERGIO, QUIÑONES, JAVIER, RODRIGUEZ, CAROLINA S., SCARABINO, FABRIZIO, SCHIARITI, AGUSTÍN, STAMPAR, SÉRGIO N., TRONOLONE, VALQUÍRIA B. & MARQUES, ANTONIO C., 2016, Census of Cnidaria (Medusozoa) and Ctenophora from South American marine waters, pp. 1-256 in Zootaxa 4194 (1) on page 103, DOI: 10.11646/zootaxa.4194.1.1, http://zenodo.org/record/10068449
Additional file 7 of Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions
Creators: name: Brown, Colin
name: Viswanadham Sridhara
name: Boutz, Daniel
name: Person, Maria
name: Marcotte, Edward
name: Barrick, Jeffrey
name: Wilke, Claus
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Plant Biology
subject: Virology

description: Fraction of total peptides across timepoints with an N-terminal alanine possessing a +42 Da modification. The plots show unmodified (green) and +42 Da modified (blue) PSM counts across all nine timepoints (x-axis) for the N-terminal position of all proteins that have both (i) at least one PSM identified by MODa as containing an N-terminal +42 Da modification and (ii) having a penultimate Alanine (AA position 2; i.e. the N-terminal residue following N-terminal methionine cleavage). Counts represent the average of the three biologcial replicates. Plots are ordered from top to bottom by the mean p value of the Fisherâ  s exact test for preferential modification (see text) from top to bottom, with the most significant protein at the top. (PDF 17 kb)
Additional file 1: Table S1. of DEPTOR maintains plasma cell differentiation and favorably affects prognosis in multiple myeloma
Creators: name: Quwaider, Dalia
name: Corchete, Luis
name: Misiewicz-Krzeminska, Irena
name: Sarasquete, María
name: Pérez, José
name: Krzeminski, Patryk
name: Puig, Noemí
name: Mateos, María
name: García-Sanz, Ramón
name: Herrero, Ana
name: Gutiérrez, Norma
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: List of oligonucleotide sequences used for 3′UTR luciferase constructs. Figure S1. DEPTOR knockdown did not alter cell viability. a Proliferation of myeloma cells 48 h after transfection with DEPTOR siRNA. Data are expressed as means of three independent experiments ± SD. Proliferation of cells transfected with siNT was taken as 100%, and values obtained in DEPTOR-silenced cells were normalized accordingly. b Percentage of apoptosis after DEPTOR knockdown in H929 and MM1S. Right panel shows representative dot plots. Figure S2. Bioinformatic identification of miRNAs that regulate DEPTOR expression. Venn diagram showing numbers of miRNAs predicted to target DEPTOR by the indicated five databases. Figure S3. Cell morphology and size in MM patients with different DEPTOR levels a Giemsa stain of three MM patients. b Average maximum diameter of MM cells measured from patients harboring high (n = 3) and low (n = 3) DEPTOR levels. At least 50 cells per experiment were counted. (*p ˂ 0.05, **p ˂ 0.01, ***p ˂ 0.001). (DOCX 1346 kb)
Ussara hilarodes
Creators: name: Joshi, Rahul
name: Farooqui, Shahabab A.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Glyphipterigidae
Ussara
Ussara hilarodes

description: 21. Ussara hilarodes (Meyrick, 1909): 430 (Glyphipteryx)
TL: Khasi hills (now in Meghalaya) (♀, NHMUK)
Distribution. Indian records: Meghalaya. Global records: not known.
description: Published as part of Joshi, Rahul, Farooqui, Shahabab A. & Singh, Navneet, 2024, A catalogue of the Yponomeutoidea of India (Lepidoptera), pp. 468-504 in Zootaxa 5468 (3) on page 484, DOI: 10.11646/zootaxa.5468.3.4, http://zenodo.org/record/12189239
Additional file 10: Table S4. of Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia
Creators: name: Thomas, Evert
name: Tovar, Eduardo
name: VillafaĂąe, Carolina
name: JosĂŠ Bocanegra
name: Moreno, Rodrigo
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology

description: Metrics obtained from genetic diversity studies of O. glumaepatula in Latin America. (DOCX 12 kb)
Acrolepiinae Heinemann 1870
Creators: name: Joshi, Rahul
name: Farooqui, Shahabab A.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Glyphipterigidae

description: Subfamily ACROLEPIINAE Heinemann, 1870
Type genus: Acrolepia Curtis, 1838: 679
description: Published as part of Joshi, Rahul, Farooqui, Shahabab A. & Singh, Navneet, 2024, A catalogue of the Yponomeutoidea of India (Lepidoptera), pp. 468-504 in Zootaxa 5468 (3) on page 484, DOI: 10.11646/zootaxa.5468.3.4, http://zenodo.org/record/12189239
MOESM4 of Assessment of copy number variation in genes related to drug resistance in Plasmodium vivax and Plasmodium falciparum isolates from the Brazilian Amazon and a systematic review of the literature
Creators: name: Costa, Gabriel
name: Amaral, Lara
name: Fontes, Cor
name: Carvalho, Luzia
name: Brito, Cristiana
name: TaĂ­S Sousa
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 4. Systematic review result for copy number variation in genes related to drug resistance in Plasmodium vivax and Plasmodium falciparum isolates worldwide.
Acrolepia Curtis 1838
Creators: name: Joshi, Rahul
name: Farooqui, Shahabab A.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Glyphipterigidae
Acrolepia

description: Genus Acrolepia Curtis, 1838: 679
TS: Acrolepia autumnitella Curtis, 1838: 679 (= Tortrix pygmaeana Haworth, 1811: 439)
description: Published as part of Joshi, Rahul, Farooqui, Shahabab A. & Singh, Navneet, 2024, A catalogue of the Yponomeutoidea of India (Lepidoptera), pp. 468-504 in Zootaxa 5468 (3) on page 485, DOI: 10.11646/zootaxa.5468.3.4, http://zenodo.org/record/12189239
MOESM4 of Assessment of copy number variation in genes related to drug resistance in Plasmodium vivax and Plasmodium falciparum isolates from the Brazilian Amazon and a systematic review of the literature
Creators: name: Costa, Gabriel
name: Amaral, Lara
name: Fontes, Cor
name: Carvalho, Luzia
name: Brito, Cristiana
name: TaĂ­S Sousa
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 4. Systematic review result for copy number variation in genes related to drug resistance in Plasmodium vivax and Plasmodium falciparum isolates worldwide.
Acrolepia conchitis Meyrick 1913
Creators: name: Joshi, Rahul
name: Farooqui, Shahabab A.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Glyphipterigidae
Acrolepia
Acrolepia conchitis

description: 22. Acrolepia conchitis Meyrick, 1913: 150
TL: Assam, Khasi hills (now in Meghalaya) (♂, NHMUK)
Distribution. Indian records: Meghalaya (Khasi hills). Global records: not known
description: Published as part of Joshi, Rahul, Farooqui, Shahabab A. & Singh, Navneet, 2024, A catalogue of the Yponomeutoidea of India (Lepidoptera), pp. 468-504 in Zootaxa 5468 (3) on page 485, DOI: 10.11646/zootaxa.5468.3.4, http://zenodo.org/record/12189239
Additional file 11: Figure S7. of Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia
Creators: name: Thomas, Evert
name: Tovar, Eduardo
name: Villafañe, Carolina
name: Bocanegra, José
name: Moreno, Rodrigo
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: Ecology
subject: Developmental Biology
subject: Plant Biology

description: Details of panicles (top), ligules and auricles (bottom) of (A) Oryza latifolia with flower size smaller than 7 mm; (B) Oryza grandiglumis with approximately equal-sized sterile and fertile lemmas; and (C) Oryza alta with flower size larger than 7 mm (photo credits: Oscar Andrés Estrada). (DOCX 180 kb)
Acrolepia manganeutis Meyrick 1913
Creators: name: Joshi, Rahul
name: Farooqui, Shahabab A.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Glyphipterigidae
Acrolepia
Acrolepia manganeutis

description: 23. Acrolepia manganeutis Meyrick, 1913: 149
TL: Ceylon, Maskeliya (Lectotype, ♂, NHMUK)
Distribution. Indian records: Meghalaya (Khasi hills), West Bengal (Kolkata). Global records: Sri Lanka.
description: Published as part of Joshi, Rahul, Farooqui, Shahabab A. & Singh, Navneet, 2024, A catalogue of the Yponomeutoidea of India (Lepidoptera), pp. 468-504 in Zootaxa 5468 (3) on page 485, DOI: 10.11646/zootaxa.5468.3.4, http://zenodo.org/record/12189239
MOESM3 of Genome-wide search for candidate genes for yeast robustness improvement against formic acid reveals novel susceptibility (Trk1 and positive regulators) and resistance (Haa1-regulon) determinants
Creators: name: Sílvia Henriques
name: Mira, Nuno
name: Sá-Correia, Isabel
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3: Table S3. Primers used in this study.
Antennella campanuliformis Mulder & Trebilcock 1909
Creators: name: OLIVEIRA, OTTO M. P.
name: MIRANDA, THAÍS P.
name: ARAUJO, ENILMA M.
name: AYÓN, PATRICIA
name: CEDEÑO-POSSO, CRISTINA M.
name: CEPEDA-MERCADO, AMANCAY A.
name: CÓRDOVA, PABLO
name: CUNHA, AMANDA F.
name: GENZANO, GABRIEL N.
name: HADDAD, MARIA ANGÉLICA
name: MIANZAN, HERMES W.
name: MIGOTTO, ALVARO E.
name: MIRANDA, LUCÍLIA S.
name: MORANDINI, ANDRÉ C.
name: NAGATA, RENATO M.
name: NASCIMENTO, KARINE B.
name: JÚNIOR, MIODELI NOGUEIRA
name: PALMA, SERGIO
name: QUIÑONES, JAVIER
name: RODRIGUEZ, CAROLINA S.
name: SCARABINO, FABRIZIO
name: SCHIARITI, AGUSTÍN
name: STAMPAR, SÉRGIO N.
name: TRONOLONE, VALQUÍRIA B.
name: MARQUES, ANTONIO C.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Cnidaria
Hydrozoa
Leptothecata
Halopterididae
Antennella
Antennella campanuliformis

description: Antennella campanuliformis (Mulder & Trebilcock, 1909)
Synonyms in the area: Antennella campanulaformis —Grohmann et al. 2003 [incorrect subsequent spelling]; Antennella campanulaformis pnulformis —Grohmann et al. 2003 [incorrect subsequent spelling] [polyp].
Distribution in South America: polyp—Atlantic Ocean, Brazil, at 20.98°S 40.32°W (Grohmann et al. 2003).
description: Published as part of OLIVEIRA, OTTO M. P., MIRANDA, THAÍS P., ARAUJO, ENILMA M., AYÓN, PATRICIA, CEDEÑO-POSSO, CRISTINA M., CEPEDA-MERCADO, AMANCAY A., CÓRDOVA, PABLO, CUNHA, AMANDA F., GENZANO, GABRIEL N., HADDAD, MARIA ANGÉLICA, MIANZAN, HERMES W., MIGOTTO, ALVARO E., MIRANDA, LUCÍLIA S., MORANDINI, ANDRÉ C., NAGATA, RENATO M., NASCIMENTO, KARINE B., JÚNIOR, MIODELI NOGUEIRA, PALMA, SERGIO, QUIÑONES, JAVIER, RODRIGUEZ, CAROLINA S., SCARABINO, FABRIZIO, SCHIARITI, AGUSTÍN, STAMPAR, SÉRGIO N., TRONOLONE, VALQUÍRIA B. & MARQUES, ANTONIO C., 2016, Census of Cnidaria (Medusozoa) and Ctenophora from South American marine waters, pp. 1-256 in Zootaxa 4194 (1) on page 103, DOI: 10.11646/zootaxa.4194.1.1, http://zenodo.org/record/10068449
Antennella curvitheca Fraser 1937
Creators: name: OLIVEIRA, OTTO M. P.
name: MIRANDA, THAÍS P.
name: ARAUJO, ENILMA M.
name: AYÓN, PATRICIA
name: CEDEÑO-POSSO, CRISTINA M.
name: CEPEDA-MERCADO, AMANCAY A.
name: CÓRDOVA, PABLO
name: CUNHA, AMANDA F.
name: GENZANO, GABRIEL N.
name: HADDAD, MARIA ANGÉLICA
name: MIANZAN, HERMES W.
name: MIGOTTO, ALVARO E.
name: MIRANDA, LUCÍLIA S.
name: MORANDINI, ANDRÉ C.
name: NAGATA, RENATO M.
name: NASCIMENTO, KARINE B.
name: JÚNIOR, MIODELI NOGUEIRA
name: PALMA, SERGIO
name: QUIÑONES, JAVIER
name: RODRIGUEZ, CAROLINA S.
name: SCARABINO, FABRIZIO
name: SCHIARITI, AGUSTÍN
name: STAMPAR, SÉRGIO N.
name: TRONOLONE, VALQUÍRIA B.
name: MARQUES, ANTONIO C.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Cnidaria
Hydrozoa
Leptothecata
Halopterididae
Antennella
Antennella curvitheca

description: Antennella curvitheca Fraser, 1937
Distribution in South America: polyp—Atlantic Ocean, Brazil, at 15.90°S 38.80°W (Grohmann et al. 2003).
description: Published as part of OLIVEIRA, OTTO M. P., MIRANDA, THAÍS P., ARAUJO, ENILMA M., AYÓN, PATRICIA, CEDEÑO-POSSO, CRISTINA M., CEPEDA-MERCADO, AMANCAY A., CÓRDOVA, PABLO, CUNHA, AMANDA F., GENZANO, GABRIEL N., HADDAD, MARIA ANGÉLICA, MIANZAN, HERMES W., MIGOTTO, ALVARO E., MIRANDA, LUCÍLIA S., MORANDINI, ANDRÉ C., NAGATA, RENATO M., NASCIMENTO, KARINE B., JÚNIOR, MIODELI NOGUEIRA, PALMA, SERGIO, QUIÑONES, JAVIER, RODRIGUEZ, CAROLINA S., SCARABINO, FABRIZIO, SCHIARITI, AGUSTÍN, STAMPAR, SÉRGIO N., TRONOLONE, VALQUÍRIA B. & MARQUES, ANTONIO C., 2016, Census of Cnidaria (Medusozoa) and Ctenophora from South American marine waters, pp. 1-256 in Zootaxa 4194 (1) on page 103, DOI: 10.11646/zootaxa.4194.1.1, http://zenodo.org/record/10068449
Whole-genome sequencing and phenotype data analysis
Creators: name: Soo-Whee, Kim
name: Hyeji, Lee
name: Gang-Hee, Lee
Publisher: name: Zenodo
Year: 2024

description: This repository contains R scripts for de novo variant, polygenic score, and phenotype analysis. The raw data are not included in this repository.

 

For variant filtering analysis, pre-installation of Hail (https://hail.is/docs/0.2/getting_started.html) and VEP (https://anaconda.org/bioconda/ensembl-vep) are required.

 

Variant filtering analysis

High-quality variant filtering

De novo variant calling

SNP matching with LD reference data

Statistical analysis

De novo variant burden test

Polygenic burden test

Phenotype comparison test

Phenotype association test

Figures

figure 1

figure 2

figure 3

figure 4

figure 5

figure 6
title: Coding of egocentric distance in the macaque ventral intraparietal area
Creators: name: Caziot, Baptiste
name: Fathkhani, Sadra
name: Bremmer, Frank
Publisher: name: TAM DataHub
Year: 0
Subjects: subject: posterior parietal cortex
subject: disparity
subject: vergence
subject: space
subject: monkey

description: The encoding of three-dimensional visual spatial information is of ultimate importance in everyday life, in particular for successful navigation toward targets or threat avoidance. Eye-movements challenge this spatial encoding: 2-3 times per second, they shift the image of the outside world across the retina. The macaque ventral intraparietal area (VIP) stands out from other areas of the dorsal ‘where’ pathway of the primate visual cortical system: many neurons encode visual information irrespective of horizontal and vertical eye position. But does this gaze invariance of spatial encoding at the single neuron level also apply to egocentric distance? Such an invariance for egocentric distances would correspond to a shift of disparity-tuning curves by vergence angle. Here, concurrent with recordings from area VIP, monkeys fixated a central target at one of three distances (vergence), while a visual stimulus was shown at one of seven distances (disparity). Most neurons’ activity was modulated independently by both disparity and eye vergence, and we did not observe shifts of disparity-tuning curves as expected from encoding egocentric distances at a single-cell level, demonstrating a different type of invariance than for visual directions. By using population activity, we were able to decode egocentric distance of a stimulus which demonstrates that egocentric distances are nonetheless represented within the neuronal population. Our results provide further strong evidence for a role of area VIP in 3D space encoding.
Vincelestes neuquenianus Bonaparte 1986
Creators: name: Suarez, Catalina
name: Forasiepi, Analia M.
name: Babot, María Judith
name: Shinmura, Tatsuya
name: Luque, Javier
name: Vanegas, Rubén D.
name: Cadena, Edwin A.
name: Goin, Francisco J.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Sparassodonta
Vincelestidae
Vincelestes
Vincelestes neuquenianus

description: Vincelestes neuquenianus Bonaparte, 1986
Bonaparte (1986), Rowe (2001).
description: Published as part of Suarez, Catalina, Forasiepi, Analia M., Babot, María Judith, Shinmura, Tatsuya, Luque, Javier, Vanegas, Rubén D., Cadena, Edwin A. & Goin, Francisco J., 2023, A sabre-tooth predator from the Neotropics: Cranial morphology of Anachlysictis gracilis Goin, 1997 (Metatheria, Thylacosmilidae), based on new specimens from La Venta (Middle Miocene, Colombia), pp. 497-572 in Geodiversitas 45 (18) on page 541, DOI: 10.5252/geodiversitas2023v45a18, http://zenodo.org/record/8434228
MOESM3 of Genome-wide search for candidate genes for yeast robustness improvement against formic acid reveals novel susceptibility (Trk1 and positive regulators) and resistance (Haa1-regulon) determinants
Creators: name: Sílvia Henriques
name: Mira, Nuno
name: Sá-Correia, Isabel
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3: Table S3. Primers used in this study.
Deltatheridium pretrituberculare Gregory & Simpson 1926
Creators: name: Suarez, Catalina
name: Forasiepi, Analia M.
name: Babot, María Judith
name: Shinmura, Tatsuya
name: Luque, Javier
name: Vanegas, Rubén D.
name: Cadena, Edwin A.
name: Goin, Francisco J.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Deltatheroida
Deltatheridiidae
Deltatheridium
Deltatheridium pretrituberculare

description: Deltatheridium pretrituberculare Gregory & Simpson, 1926
Gregory & Simpson (1926); Rougier et al. (1998).
description: Published as part of Suarez, Catalina, Forasiepi, Analia M., Babot, María Judith, Shinmura, Tatsuya, Luque, Javier, Vanegas, Rubén D., Cadena, Edwin A. & Goin, Francisco J., 2023, A sabre-tooth predator from the Neotropics: Cranial morphology of Anachlysictis gracilis Goin, 1997 (Metatheria, Thylacosmilidae), based on new specimens from La Venta (Middle Miocene, Colombia), pp. 497-572 in Geodiversitas 45 (18) on page 541, DOI: 10.5252/geodiversitas2023v45a18, http://zenodo.org/record/8434228
Antennella quadriaurita Ritchie 1909
Creators: name: OLIVEIRA, OTTO M. P.
name: MIRANDA, THAÍS P.
name: ARAUJO, ENILMA M.
name: AYÓN, PATRICIA
name: CEDEÑO-POSSO, CRISTINA M.
name: CEPEDA-MERCADO, AMANCAY A.
name: CÓRDOVA, PABLO
name: CUNHA, AMANDA F.
name: GENZANO, GABRIEL N.
name: HADDAD, MARIA ANGÉLICA
name: MIANZAN, HERMES W.
name: MIGOTTO, ALVARO E.
name: MIRANDA, LUCÍLIA S.
name: MORANDINI, ANDRÉ C.
name: NAGATA, RENATO M.
name: NASCIMENTO, KARINE B.
name: JÚNIOR, MIODELI NOGUEIRA
name: PALMA, SERGIO
name: QUIÑONES, JAVIER
name: RODRIGUEZ, CAROLINA S.
name: SCARABINO, FABRIZIO
name: SCHIARITI, AGUSTÍN
name: STAMPAR, SÉRGIO N.
name: TRONOLONE, VALQUÍRIA B.
name: MARQUES, ANTONIO C.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Cnidaria
Hydrozoa
Leptothecata
Halopterididae
Antennella
Antennella quadriaurita

description: Antennella quadriaurita Ritchie, 1909
Distribution in South America: polyp—Atlantic Ocean, Brazil, at 22.10°S 40°W (Grohmann et al. 2003).
description: Published as part of OLIVEIRA, OTTO M. P., MIRANDA, THAÍS P., ARAUJO, ENILMA M., AYÓN, PATRICIA, CEDEÑO-POSSO, CRISTINA M., CEPEDA-MERCADO, AMANCAY A., CÓRDOVA, PABLO, CUNHA, AMANDA F., GENZANO, GABRIEL N., HADDAD, MARIA ANGÉLICA, MIANZAN, HERMES W., MIGOTTO, ALVARO E., MIRANDA, LUCÍLIA S., MORANDINI, ANDRÉ C., NAGATA, RENATO M., NASCIMENTO, KARINE B., JÚNIOR, MIODELI NOGUEIRA, PALMA, SERGIO, QUIÑONES, JAVIER, RODRIGUEZ, CAROLINA S., SCARABINO, FABRIZIO, SCHIARITI, AGUSTÍN, STAMPAR, SÉRGIO N., TRONOLONE, VALQUÍRIA B. & MARQUES, ANTONIO C., 2016, Census of Cnidaria (Medusozoa) and Ctenophora from South American marine waters, pp. 1-256 in Zootaxa 4194 (1) on page 103, DOI: 10.11646/zootaxa.4194.1.1, http://zenodo.org/record/10068449
Deltatheroides cretacicus Gregory & Simpson 1926
Creators: name: Suarez, Catalina
name: Forasiepi, Analia M.
name: Babot, María Judith
name: Shinmura, Tatsuya
name: Luque, Javier
name: Vanegas, Rubén D.
name: Cadena, Edwin A.
name: Goin, Francisco J.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Deltatheroida
Deltatheridiidae
Deltatheroides
Deltatheroides cretacicus

description: Deltatheroides cretacicus Gregory & Simpson, 1926
Gregory & Simpson (1926); Rougier et al. (2004).
description: Published as part of Suarez, Catalina, Forasiepi, Analia M., Babot, María Judith, Shinmura, Tatsuya, Luque, Javier, Vanegas, Rubén D., Cadena, Edwin A. & Goin, Francisco J., 2023, A sabre-tooth predator from the Neotropics: Cranial morphology of Anachlysictis gracilis Goin, 1997 (Metatheria, Thylacosmilidae), based on new specimens from La Venta (Middle Miocene, Colombia), pp. 497-572 in Geodiversitas 45 (18) on page 541, DOI: 10.5252/geodiversitas2023v45a18, http://zenodo.org/record/8434228