cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Wide field beamformed observation with MeerKAT
Creators: name: Chen, Weiwei
name: Barr, Ewan
name: Karuppusamy, Ramesh
name: Kramer, Michael
name: Stappers, Benjamin
Publisher: name: arXiv
Year: 2021
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: Large-scale beamforming with radio interferometers has the potential to revolutionize the science done with pulsars and fast radio bursts by improving the survey efficiency for these sources. We describe a wide-field beamformer for the MeerKAT radio telescope and outline strategies to optimally design such surveys. A software implementation of these techniques, ${\rm M{\small OSAIC}}$ is introduced and its application in the MeerKAT telescope is presented. We show initial results using the beamformer by observing a globular cluster to track several pulsars simultaneously and demonstrate the source localization capability of this observation.
The Pharmacokinetics of CPZEN-45, a Novel Anti-Tuberculosis Drug, in Guinea Pigs
Creators: name: Hanif, Shumaila Nida Muhammad
name: Durham, Phillip
name: Ibrahim, Mariam
name: Garcia-Contreras, Lucila
name: Hickey, Anthony J.
Publisher: name: Multidisciplinary Digital Publishing Institute (MDPI)
Year: 2023

description: CPZEN-45 is a novel compound with activity against drug-susceptible and drug-resistant tuberculosis (TB). The present study was undertaken to determine the best dose and dosing regimen of inhalable CPZEN-45 powders to use in efficacy studies with TB-infected guinea pigs. The disposition of CPZEN-45 after intravenous, subcutaneous (SC), and direct pulmonary administration (INS) was first determined to obtain their basal pharmacokinetic (PK) parameters. Then, the disposition of CPZEN-45 powders after passive inhalation using consecutive and sequential doses was evaluated. Plasma concentration versus time curves and PK parameters indicated that the absorption of CPZEN-45 after INS was faster than after SC administration (Ka = 12.94 ± 5.66 h−1 and 1.23 ± 0.55 h−1, respectively), had a longer half-life (2.06 ± 1.01 h versus 0.76 ± 0.22 h) and had higher bioavailability (67.78% and 47.73%, respectively). The plasma concentration versus time profiles and the lung tissue concentration at the end of the study period were not proportional to the dose size after one, two, and three consecutive passive inhalation doses. Three sequential passive inhalation doses maintained therapeutic concentration levels in plasma and lung tissue for a longer time than three consecutive doses (10 h vs. 3 h, respectively). Future studies to evaluate the efficacy of inhaled CPZEN-45 powders should employ sequential doses of the powder, with one nominal dose administered to animals three times per day.
Additional file 1 of Imaging-based body fat depots and new-onset atrial fibrillation in general population: a prospective cohort study
Creators: name: Lu, Zuolin
name: Tilly, Martijn J.
name: Aribas, Elif
name: Bos, Daniel
name: Geurts, Sven
name: Stricker, Bruno H.
name: de Knegt, Robert
name: Ikram, M. Arfan
name: de Groot, Natasja M. S.
name: Voortman, Trudy
name: Kavousi, Maryam
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Plant Biology
subject: Computational Biology
subject: Cardiology

description: Additional file 1: Methods. Assessment of cardiovascular risk factors. Table S1. Associations between various fat depots and incident atrial fibrillation among men and women. Table S2. Associations between various fat depots and incident atrial fibrillation, stratified by body mass index. Table S3. Associations between various fat depots and incident atrial fibrillation among participants free of prevalent cardiovascular disease . Table S4. Associations between lean body mass and incident atrial fibrillation. Table S5. Factor loadings for each fat distribution pattern in principal component analysis . Table S6. Associations between various fat depots and incident atrial fibrillation among men and women adjusting for body mass index and waist-to-hip ratio. Figure S1. Correlations between various fat depots. Figure S2. Scree plot in principal component analysis.
One-Shot Yield-Cost Relations in General Quantum Resource Theories
Creators: name: Takagi, Ryuji
name: Regula, Bartosz
name: Wilde, Mark M.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Although it is well known that the amount of resources that can be asymptotically distilled from a quantum state or channel does not exceed the resource cost needed to produce it, the corresponding relation in the non-asymptotic regime hitherto has not been well understood. Here, we establish a quantitative relation between the one-shot distillable resource yield and dilution cost in terms of transformation errors involved in these processes. Notably, our bound is applicable to quantum state and channel manipulation with respect to any type of quantum resource and any class of free transformations thereof, encompassing broad types of settings, including entanglement, quantum thermodynamics, and quantum communication. We also show that our techniques provide strong converse bounds relating the distillable resource and resource dilution cost in the asymptotic regime. Moreover, we introduce a class of channels that generalize twirling maps encountered in many resource theories, and by directly connecting it with resource quantification, we compute analytically several smoothed resource measures and improve our one-shot yield--cost bound in relevant theories. We use these operational insights to exactly evaluate important measures for various resource states in the resource theory of magic states.
description: 10+15 pages; typo corrected. close to published version
Antiferromagnetic VdW Phase at the Interface of Sputtered Topological Insulator/Ferromagnet-Bi2Te3/Ni80Fe20 Heterostructures
Creators: name: Bhattacharjee, Nirjhar
name: Mahalingam, Krishnamurthy
name: Fedorko, Adrian
name: Lauter, Valeria
name: Matzelle, Matthew
name: Singh, Bahadur
name: Grutter, Alexander
name: Will-Cole, Alexandria
name: Page, Michael
name: McConney, Michael
name: Markiewicz, Robert
name: Bansil, Arun
name: Heiman, Donald
name: Sun, Nian Xiang
Publisher: name: arXiv
Year: 2021
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Magnetic ordering in topological insulators (TI) is crucial for breaking time-reversal symmetry (TRS) and thereby opening a gap in the topological surface states (TSSs) [1-6], which is the key for realizing useful topological properties such as the quantum anomalous Hall (QAH) effect, axion insulator state and the topological magnetoelectric effect. Combining TIs with magnetic materials can be expected to yield interfaces [26-28] with unique topological and magnetic phases but such interfaces largely remain unexplored. Here, we report the discovery of a novel antiferromagnetic (AFM) Van der Waals (VdW) phase at the interface of a sputtered c-axis oriented TI/FM (Bi2Te3/Ni80Fe20) heterostructure due to the formation of a Ni-intercalated Bi2Te3 VdW interfacial layer. The TI/FM heterostructure is shown to possess a significant spontaneous exchange bias and the presence of an AFM order at the interface via measurements of the hysteresis loop as well as the observation of compensated magnetic moments at the interface using polarized neutron reflectometry (PNR). An in-depth analysis of the structural and chemical properties of the interfacial AFM phase was carried out using selected area electron diffraction (SAED), electron energy loss spectroscopy (EELS), and X-ray photoelectron spectroscopy (XPS). These studies show evidence of solid-state reaction between the intercalated Ni atoms and Bi2Te3 layers and of the formation of topologically nontrivial magnetic VdW compounds. The Néel temperature of the interfacial AFM phase is 63 K, which is higher than that of typical magnetic topological insulators [53]. Our study shows how industrial CMOS-process-compatible sputtered TI/FM heterostructures can provide a novel materials platform for exploring the emergence of interfacial topological magnetic phases and high-temperature topological magnetic states.
description: 23 pages, 4 figures
The Social Fabric of Watershed Management: Comparison of Citizen-Based and Agency-Based Organizations
Creators: name: Cho, Sung-woo
name: Stedman, Richard
name: Allred, Shorna B.
Publisher: name: Multidisciplinary Digital Publishing Institute (MDPI)
Year: 2024

description: This research offers an exploration of the social networks within two distinct watershed groups in the Hudson River, New York State, USA: citizen-based and agency-based organizations. Through a social network analysis of their operations and interactions, this study unveils the complex dynamics and roles of individual nodes in facilitating nine types of connections, such as political and financial, within these networks. The citizen-based organization demonstrated denser and more cohesive networks, suggesting robust relationships and enhanced resilience and adaptability. In contrast, the agency-based organization exhibited more hierarchical networks. This study employs both network-level and node-level analyses to examine the social networks within watershed groups. Our network-level analysis focuses on metrics such as density, average degree, and hierarchy, while our node-level analysis examines clustering coefficients and influence. It also explores ego networks through an analysis of their density and the effective size of structural holes. Our finding is that the social networks of the two groups are quite distinct, and there is limited exchange of information and resources between them. However, we discovered that effective communication among a few well-connected individuals (e.g., those with high influence values) within each group can enhance the effectiveness and resilience of these networks. These analyses aim to provide a detailed understanding of the social dynamics within regional watershed groups.
title: Querying Art History Data on the Web (7): Considerations: Art historical data and research questions
Creators: name: Dreßen, Angela
name: Sacher, Elodie
Publisher: name: Friedrich-Schiller-Universität
Year: 2023
Subjects: subject: Open Data
subject: Geschichtsforschung
subject: 004
subject: 060

description: Where do we find Art History Data for our research? What are data-based research questions and how can we answer them? What example projects exist and what are ideas for own research? This video is part of the series Querying Museum Data/ Art History Data on the Web. It was created by PD Dr. Angela Dreßen (Andrew W. Mellon Librarian) and Elodie Sacher as a cooperation of the I TATTI Harvard University Center for Italian Renaissance Studies, the Technische Universität Dresden and the Project Digital4Humanities at the Friedrich-Schiller-Universität Jena. For further information visit the Digital4Humanities-website: https://www.gw.uni-jena.de/fakultaet/juniorprofessur-fuer-digital-humanities-bild-objekt/forschung/Digital4Humanities
description: Querying Museum and Art History Data on the Web
Price-Fixing Plans
Creators: name: Thomsen, F. L.
Publisher: name: Unknown
Year: 1938
Subjects: subject: Demand and Price Analysis
subject: International Relations/Trade
subject: Marketing
subject: FOS: Economics and business

description: Excerpt: The form of price fixing in which most interest has been exhibited recently is that represented by plans for fixing the price of only that portion of the total supply of exported commodities which moves into domestic consumption. Under present conditions, the price which can be obtained for the domestic portion of some crops is limited by the price which can be obtained for the exported portion, and one price prevails for the entire supply. Under the proposed price-fixing plans, the domestic and foreign markets would be separated, with the fixed price applying to the portion sold domestically and a freely competitive world supply and demand price for the remainder.
description: Summary of an address by F. L. Thomsen, Bureau or Agricultural Economics, before the annual outlook conference of representatives of the state agricultural colleges and the Bureau of Agricultural Economics, Washington, D. C., October 25, 1938.
Superorbits
Creators: name: Alldridge, Alexander
name: Hilgert, Joachim
name: Wurzbacher, Tilmann
Publisher: name: arXiv
Year: 2015
Subjects: subject: Differential Geometry (math.DG)
subject: Mathematical Physics (math-ph)
subject: Representation Theory (math.RT)
subject: FOS: Mathematics
subject: FOS: Physical sciences
subject: Primary 14L30, 58A50, Secondary 14M30, 32C11, 53D50, 57S20

description: We study actions of Lie supergroups, in particular, the hitherto elusive notion of orbits through odd (or more general) points. Following categorical principles, we derive a conceptual framework for their treatment and therein prove general existence theorems for the isotropy (or stabiliser) supergroups and orbits through general points. In this setting, we show that the coadjoint orbits always admit a (relative) supersymplectic structure of Kirillov-Kostant-Souriau type. Applying a family version of Kirillov's orbit method, we decompose the regular representation of an odd Abelian supergroup into an odd direct integral of characters and construct universal families of representations, parametrised by a supermanifold, for two different super variants of the Heisenberg group.
description: 47 pages; v3: final version, accepted for publication in J. Math. Inst. Jussieu
Torrenticola (Torrenticola) indica Cook 1967
Creators: name: Pešić, Vladimir
name: Chatterjee, Tapas
name: Bordoloi, Sabitry
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Torrenticolidae
Torrenticola
Torrenticola indica

description: Torrenticola (Torrenticola) indica Cook, 1967
Records from the study area: Tamil Nadu, Kerala—Cook (1967); Prasad (1974).
Habitat: Streams.
Distribution: India, Brunei.
description: Published as part of Pešić, Vladimir, Chatterjee, Tapas & Bordoloi, Sabitry, 2010, A checklist of the water mites (Acari: Hydrachnidia) of India, with new records and description of one new species, pp. 1-54 in Zootaxa 2617 (1) on page 15, DOI: 10.11646/zootaxa.2617.1.1, http://zenodo.org/record/197964
Usage of e-Journals Among Research Scholars of NIT Rourkela : A Survey
Creators: name: Gunjal, Bhojaraju
name: Abdul Gaffar, SK
Publisher: name: figshare
Year: 2023
Subjects: classificationCode: 461006
subject: Library studies
classificationCode: 461099
subject: Library and information studies not elsewhere classified

description: Libraries have witnessed a prominent transition from print to electronic resources that have not only impacted their services, but users too. Inflow of resources in electronic format and subscription of e-books, e-journals, e-databases and others have totally changed the library operations. E-Resources are important component of the collection building process of the library that is accessed through computers or mobile devices either remotely or locally. Some of the frequently used e-resources in the libraries are e-journals, e-books, e-database such as full text, citation and abstracting, reference, images, audio-video materials, etc. Some other examples of e-resources include, but are not limited to, web and online databases, whether free or fee-based. Libraries are always committed to preserve their e-resources to ensure permanent access to them by the users to support research and academic activities of an institute. In this age of rapidly changing technologies, it is essential for all library professionals to keep abreast of the latest developments, emerging trends & techniques in the area of Electronic Resource Management (ERM) in libraries. Certain issues and challenges faced in these areas need to be taken care of with proper solutions. This book intends to explain the concept of Electronic Resource Management in Libraries, its associated issues and challenges, emerging trends and techniques in ERM, search and discovery techniques and scholarly communications. It aims to help all library and information professionals understanding the emerging trends and technologies in ERM arena. It also helps in understanding the various issues and challenges faced by the library professionals and attempts to provide the probable solutions to adopt at their workplaces.Citiaion:
SK Abdul Gaffar, Bhojaraju Gunjal (2016) Usage of e-Journals Among Research Scholars of NIT Rourkela : A Survey In: Electronic Resource Management in Libraries : Trends, Issues and Challenges Edited by:Bhojaraju Gunjal and Others. 179-191 New Delhi: Ess Ess Publications, India isbn:9788170008071 URL: http://www.essessreference.com/servlet/esGetBiblio?bno=687
Additional file 3 of Gut microbiome profiling of a rural and urban South African cohort reveals biomarkers of a population in lifestyle transition
Creators: name: Oduaran, O. H.
name: F. B. Tamburini
name: V. Sahibdeen
name: R. Brewster
name: F. X. Gómez-Olivé
name: K. Kahn
name: S. A. Norris
name: S. M. Tollman
name: R. Twine
name: A. N. Wade
name: R. G. Wagner
name: Z. Lombard
name: A. S. Bhatt
name: S. Hazelhurst
Publisher: name: figshare
Year: 2020
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 3: Extended information on the community engagement process. Supplementary Table 1. Sample reads tracked through the pre-processing steps. Supplementary Table 2. Genera, associated p-values and log2 fold changes corresponding to phyla on the volcano plots in Fig. 5.
Sphynx: ReLU-Efficient Network Design for Private Inference
Creators: name: Cho, Minsu
name: Ghodsi, Zahra
name: Reagen, Brandon
name: Garg, Siddharth
name: Hegde, Chinmay
Publisher: name: arXiv
Year: 2021
Subjects: subject: Cryptography and Security (cs.CR)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: The emergence of deep learning has been accompanied by privacy concerns surrounding users' data and service providers' models. We focus on private inference (PI), where the goal is to perform inference on a user's data sample using a service provider's model. Existing PI methods for deep networks enable cryptographically secure inference with little drop in functionality; however, they incur severe latency costs, primarily caused by non-linear network operations (such as ReLUs). This paper presents Sphynx, a ReLU-efficient network design method based on micro-search strategies for convolutional cell design. Sphynx achieves Pareto dominance over all existing private inference methods on CIFAR-100. We also design large-scale networks that support cryptographically private inference on Tiny-ImageNet and ImageNet.
Additional file 1: of The prevalence and risk of urinary tract infection in malnourished children: a systematic review and meta-analysis
Creators: name: Uwaezuoke, Samuel
name: Ikenna Ndu
name: Ikenna Eze
Publisher: name: Figshare
Year: 2019
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Table S1. Study quality scores based on the Newcastle-Ottawa scale for non-randomized studies. Table S2. Sensitivity analyses of UTI prevalence in malnourished children and association of UTI and malnutrition in malnourished children and healthy controls. Table S3. Leave-one-out sensitivity analyses of random-effects prevalence of urinary tract infection in malnourished children. Table S4. Leave-one-out sensitivity analyses of random-effects association between malnutrition and urinary tract infection in children. (DOCX 28 kb)
Predictores epidemiológicos y clínicos de COVID-19 en presintomáticos y sintomáticos ambulatorios. Cohorte de un solo centro
Creators: name: García-González, Tahali Mendoza-Oliveros, José Reyes Canché-Pech, Leticia Chin-Hau, Alejandro José Gómez-García, Roger Iván López-Díaz, Norma Emily Sauri-Medina, Adrian Alejandro Ceballos- López, María E. López-Novelo, Igrid
Publisher: name: figshare
Year: 2023
Subjects: classificationCode: 320211
subject: Infectious diseases
classificationCode: 310706
subject: Virology
classificationCode: 420202
subject: Disease surveillance

description: Background. In Mexico, the epidemiology of SARS-CoV-2 infection in the ambulatory setting and the identification of COVID-19 predictors have been poorly studied. Objective. To describe the epidemiological and clinical characteristics of presymptomatic and symptomatic outpatients with SARS-CoV-2 and its association with infection. Material and Methods. Retrospective cohort of 9 598 outpatients from Yucatan who requested molecular diagnosis of SARS-COV-2 during 2020. All patients answered a questionnaire to record epidemiological and clinical variables. Predictors of positivity to infection were identified by multivariable logistic regression. Results. The incidence of SARS-CoV-2 was 28.8%. Of the total number of positive patients, 66.1% had previous contact with COVID-19 patients, 65.0% had symptoms and 35.0% were presymptomatic at the time of sampling. The most frequent comorbidity in the positive patients was arterial hypertension (25.2%, p=0.005). In general, male sex, age, previous contact with COVID-19 cases, arterial hypertension, and the concomitant symptoms of dry cough/sore throat and anosmia/ageusia were independently associated with SARS-CoV-2. Previous contact with COVID-19 cases was a strong predictor of positivity in presymptomatic carriers. Conclusions. The identification of non-invasive risk predictors of SARSCoV-2 can be used for epidemiological surveillance of COVID-19 in an
Transient CD4+ T cell depletion during suppressive ART reduces the HIV reservoir in humanized mice
Creators: name: Ling L.
name: Falcinelli S.D.
name: Wahl A.
name: Archin N.M.
name: De C.
name: Margolis D.M.
name: Garcia J.V.
name: Silvestri G.
name: Kovarova M.
name: Begum N.
name: Spagnuolo R.A.
Publisher: name: Public Library of Science
Year: 2023

description: Lifelong treatment is required for people living with HIV as current antiretroviral therapy (ART) does not eradicate HIV infection. Latently infected cells are essentially indistinguishable from uninfected cells and cannot be depleted by currently available approaches. This study evaluated antibody mediated transient CD4+ T cell depletion as a strategy to reduce the latent HIV reservoir. Anti-CD4 antibodies effectively depleted CD4+ T cells in the peripheral blood and tissues of humanized mice. We then demonstrate that antibody-mediated CD4+ T cell depletion of HIV infected ART-suppressed animals results in substantial reductions in cell-associated viral RNA and DNA levels in peripheral blood cells over the course of anti-CD4 antibody treatment. Recovery of CD4+ T cells was observed in all tissues analyzed except for the lung 26 days after cessation of antibody treatment. After CD4+ T cell recovery, significantly lower levels of cell-associated viral RNA and DNA were detected in the tissues of anti-CD4 antibody-treated animals. Further, an 8.5-fold reduction in the levels of intact HIV proviral DNA and a 3.1-fold reduction in the number of latently infected cells were observed in anti-CD4-antibody-treated animals compared with controls. However, there was no delay in viral rebound when ART was discontinued in anti-CD4 antibody-treated animals following CD4+ T cell recovery compared with controls. Our results suggest that transient CD4+ T cell depletion, a long-standing clinical intervention that might have an acceptable safety profile, during suppressive ART can reduce the size of the HIV reservoir in humanized mice.
Additional file 2 of Myocardial effects of angiotensin II compared to norepinephrine in an animal model of septic shock
Creators: name: Garcia, Bruno
name: Su, Fuhong
name: Dewachter, Laurence
name: Favory, Raphaël
name: Khaldi, Amina
name: Moiroux-Sahraoui, Alexander
name: Annoni, Filippo
name: Vasques-Nóvoa, Francisco
name: Rocha-Oliveira, Estela
name: Roncon-Albuquerque, Roberto
name: Hubesch, Geraldine
name: Njimi, Hassane
name: Vincent, Jean-Louis
name: Taccone, Fabio S.
name: Creteur, Jacques
name: Herpain, Antoine
Publisher: name: figshare
Year: 2022
Subjects: subject: Biophysics
subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences

description: Additional file 2. Uncropped gels.
Influence of static correlation on the magnon dynamics of an itinerant ferromagnet with competing exchange interactions -- a first principles study of MnBi
Creators: name: Skovhus, Thorbjørn
name: Olsen, Thomas
name: Rønnow, Henrik M.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We present first principles calculations of the dynamic susceptibility in strained and doped ferromagnetic MnBi using time-dependent density functional theory. In spite of being a metal, MnBi exhibits signatures of strong correlation and a proper description in the framework of density functional theory requires Hubbard corrections to the Mn $d$-orbitals. To permit calculations of the dynamic susceptibility with Hubbard corrections applied to the ground state electronic structure, we use a consistent rescaling of the exchange-correlation kernel maintaining the delicate balance between the magnon dispersion and the Stoner continuum. We find excellent agreement with the experimentally observed magnon dispersion for pristine MnBi and show that the material undergoes a phase transition to helical order under application of either doping or strain. The presented methodology paves the way for future LR-TDDFT studies of magnetic phase transitions, also for the wide range of materials with pronounced static correlation effects that are not accounted for at the LDA level.
description: 14 pages, v2
Additional file 2 of Gut microbiome profiling of a rural and urban South African cohort reveals biomarkers of a population in lifestyle transition
Creators: name: Oduaran, O. H.
name: F. B. Tamburini
name: V. Sahibdeen
name: R. Brewster
name: F. X. Gómez-Olivé
name: K. Kahn
name: S. A. Norris
name: S. M. Tollman
name: R. Twine
name: A. N. Wade
name: R. G. Wagner
name: Z. Lombard
name: A. S. Bhatt
name: S. Hazelhurst
Publisher: name: figshare
Year: 2020
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 2: Supplementary Figure 2. Batch-control test. To control for batch effects from different sequencing runs, 14 samples from the first batch were re-sequenced. Comparison of the samples from the two sequence runs using Bray-Curtis measure indicates the absence of any potentially damaging batch effects.
Additional file 1: of Facile In Situ Preparation and In Vitro Antibacterial Activity of PDMAEMA-Based Silver-Bearing Copolymer Micelles
Creators: name: Wenjing Lin
name: Kaihang Huang
name: Yanzhe Li
name: Yanlin Qin
name: Xiong, Di
name: Jiabao Ling
name: Guobin Yi
name: Zilun Tang
name: Jinglian Lin
name: Yunwei Huang
name: Chufen Yang
name: Jufang Wang
Publisher: name: Figshare
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Inorganic Chemistry
subject: Plant Biology
subject: FOS: Biological sciences

description: Table S1. DPD bead interaction parameters aij. Figure S1. The molecular structures and coarse-grained models of (I) PDMAEMA-b-PHEMA-b-PPEGMA or (PDMAEMA-b-PHEMA-b-PPEGMA)4, (II) Ag, and (III) Water. Figure S2. 1H NMR spectrum of (Br)4. Figure S3. 1H NMR spectrum of the linear copolymer PDMAEMA-b-PHEMA-b-PPEGMA. Figure S4. 1H NMR spectrum of the star copolymer (PDMAEMA-b-PHEMA-b-PPEGMA)4. Figure S5. FT IR spectra of (A) linear copolymers and (B) star copolymers: (a) linear/star copolymers and (b) their micelles stabilized AgNPs at PDMAEMA/AgNO3 molar ratio of 6/1. Figure S6. XRD patterns of (A) linear and (B) star copolymers micelles stabilized AgNPs at PDMAEMA/AgNO3 molar ratio of 6/1. (DOC 5709 kb)
DISAPERE: A Dataset for Discourse Structure in Peer Review Discussions
Creators: name: Kennard, Neha
name: O'Gorman, Tim
name: Das, Rajarshi
name: Sharma, Akshay
name: Bagchi, Chhandak
name: Clinton, Matthew
name: Yelugam, Pranay Kumar
name: Zamani, Hamed
name: McCallum, Andrew
Publisher: name: arXiv
Year: 2021
Subjects: subject: Computation and Language (cs.CL)
subject: FOS: Computer and information sciences

description: At the foundation of scientific evaluation is the labor-intensive process of peer review. This critical task requires participants to consume vast amounts of highly technical text. Prior work has annotated different aspects of review argumentation, but discourse relations between reviews and rebuttals have yet to be examined. We present DISAPERE, a labeled dataset of 20k sentences contained in 506 review-rebuttal pairs in English, annotated by experts. DISAPERE synthesizes label sets from prior work and extends them to include fine-grained annotation of the rebuttal sentences, characterizing their context in the review and the authors' stance towards review arguments. Further, we annotate every review and rebuttal sentence. We show that discourse cues from rebuttals can shed light on the quality and interpretation of reviews. Further, an understanding of the argumentative strategies employed by the reviewers and authors provides useful signal for area chairs and other decision makers.
Glyphidocera vocis ADAMSKI, 2005, new species
Creators: name: DAVID ADAMSKI
Publisher: name: Zenodo
Year: 2005
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Symmocidae
Glyphidocera
Glyphidocera vocis

description: Glyphidocera vocis, new species (Figs. 264–266, 375, Map 48) Diagnosis.— Glyphidocera vocis is most similar to G. clavae but differs from the latter by having a wider uncus, a smaller gnathos, a longer digitate process of the valva, costal furcae of the valval costa near parallel, and absence of an apical cornutus of the aedeagal vesica. Description.— Head: Vertex and frontoclypeus pale yellow; outer surface of labial palpus pale yellow intermixed with few brown scales, inner surface pale yellow; scape pale yellow, flagellum with alternating bands of pale­yellow and pale­brown bands; male 4 th flagellomere dorsally protuberant and curved, forming a shallow concavity opposite slightly excavated flagellomeres 5–6 [setiform scales associated with 4 th flagellomere missing]; proboscis pale yellow. Thorax: Tegula and mesonotum pale yellow intermixed with few brown scales. Legs pale yellow. Forewing (Fig. 375): Length 6.8 mm (n = 1), pale yellow intermixed with few brown scales; 3 brown spots within cell, 1 spot near midcell, 2 spots near distal end parallel with crossvein. Undersurface brown. Hindwing: Pale brown. Abdomen (Fig. 264): Male with 3 transverse, irregular rows of sex scales on intersegmental area between terga 2–3. Male Genitalia (Figs. 265–266): Uncus elongate, wide at base, broadly constricted near 1 / 3, widening near midlength, gradually narrowing to a sparsely setose and acuminate apex; gnathos sparsely setose, short, moderately widened throughout length; tegumen nearly parallelsided; dorsal strut of tegumen with arms convergent along posteroventral margin, extending dorsally and atrophied; valva with costa nearly straight from a shallow depression beyond a curved, basal, digitate process to dorsal furca; apex widely bifurcate, margin between furcae U­shaped; furcae parallel, ventral furca slightly longer than dorsal furca; base of costa with an elongate, slightly curved, digitate process; sacculus twisted apically, constricting valva slightly before midlength, forming an elongate and broadly rounded cucullus; cucullus membranous and setose; vesica of aedeagus with many stout, conical cornuti. Female Genitalia: Unknown. Holotype ɗ, “ COSTA RICA, Heredia, Est[ación] Biol[ógica] La Selva, 50–150 m, 10 ° 26 'N, 84 °01'W, Mar. 1996, INBio­OET”, “ 19 Marzo 1996, L/04/ 188, Biblioteca”, “ INBio: COSTA RICA: CRI 001, 257384 ” [bar code label], “ INBio, ɗ Genitalia Slide by D. Adamski, No. 906 ” [yellow label]. Distribution (Map 48): Glyphidocera vocis is known from one collecting site in eastcentral Heredia in northern Costa Rica. Etymology: The species epithet vocis is derived from the Latin “vox,” meaning voice.
description: Published as part of DAVID ADAMSKI, 2005, Review of Glyphidocera Walsingham of Costa Rica (Lepidoptera: Gelechioidea: Glyphidoceridae), pp. 1-158 in Zootaxa 858 on pages 149-150, DOI: 10.5281/zenodo.170793
"Philosophysics" at the University of Vienna: The (pre-)history of foundations of quantum physics in the Viennese cultural context
Creators: name: Del Santo, Flavio
name: Schwarzhans, Emanuel
Publisher: name: arXiv
Year: 2021
Subjects: subject: History and Philosophy of Physics (physics.hist-ph)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Vienna today is one of the capitals for the research on foundations of quantum physics. In this paper we reconstruct the main historical steps of the development of modern physics in Vienna, with an emphasis on quantum foundations. We show that the two main intuitive reasons, namely the influence of E. Schrödinger and the initiatives of A. Zeilinger in more recent years, cannot alone be held accountable for today's outstanding research landscape on foundation of quantum mechanics in Vienna. We instead show that the connection between physics and philosophy in Vienna always had an exceptional strength, and that this played a major role in establishing the prolific field of quantum foundations.
description: 27 pages, 3 figures
Virological Findings and Treatment Outcomes of Cases That Developed Dolutegravir Resistance in Malawi’s National HIV Treatment Program
Creators: name: van Oosterhout, Joep J.
name: Chipungu, Chifundo
name: Simon, Katherine
name: Bisani, Pachawo
name: Kanise, Hope
name: Matola, Bilaal W.
name: Sagno, Jean-Batiste
name: Songo, John
name: Cox, Carrie
name: Hosseinipour, Mina C.
name: Heller, Tom
name: Steegen, Kim
name: Jahn, Andreas
name: Hoffman, Risa M.
name: Phiri, Sam
name: Nyirenda, Rose
name: Wallrauch, Claudia
Publisher: name: Multidisciplinary Digital Publishing Institute (MDPI)
Year: 2024

description: Millions of Africans are on dolutegravir-based antiretroviral therapy (ART), but few detailed descriptions of dolutegravir resistance and its clinical management exist. We reviewed HIV drug resistance (HIVDR) testing application forms submitted between June 2019 and October 2022, data from the national HIVDR database, and genotypic test results. We obtained standardized ART outcomes and virological results of cases with dolutegravir resistance, and explored associations with dolutegravir resistance among individuals with successful integrase sequencing. All cases were on two nucleoside reverse transcriptase inhibitors (NRTIs)/dolutegravir, and had confirmed virological failure, generally with prolonged viremia. Among 89 samples with successful integrase sequencing, 24 showed dolutegravir resistance. Dolutegravir resistance-associated mutations included R263K (16/24), E138K (7/24), and G118R (6/24). In multivariable logistic regression analysis, older age and the presence of high-level NRTI resistance were significantly associated with dolutegravir resistance. After treatment modification recommendations, four individuals (17%) with dolutegravir resistance died, one self-discontinued ART, one defaulted, and one transferred out. Of the 17 remaining individuals, 12 had follow-up VL results, and 11 (92%) were <1000 copies/mL. Twenty-four cases with dolutegravir resistance among 89 individuals with confirmed virological failure suggests a considerable prevalence in the Malawi HIV program. Successful management of dolutegravir resistance was possible, but early mortality was high. More research on the management of treatment-experienced individuals with dolutegravir resistance is needed.
Mechanism for particle fractionalization and universal edge physics in quantum Hall fluids
Creators: name: Bochniak, Arkadiusz
name: Nussinov, Zohar
name: Seidel, Alexander
name: Ortiz, Gerardo
Publisher: name: arXiv
Year: 2021
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Mathematical Physics (math-ph)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Advancing a microscopic framework that rigorously unveils the underlying topological hallmarks of fractional quantum Hall (FQH) fluids is a prerequisite for making progress in the classification of strongly-coupled topological matter. Here we advance a second-quantization framework that helps reveal an exact fusion mechanism for particle fractionalization in FQH fluids, and uncover the fundamental structure behind the condensation of non-local operators characterizing topological order in the lowest-Landau-level (LLL). We show the first exact analytic computation of the quasielectron Berry connections leading to its fractional charge and exchange statistics, and perform Monte Carlo simulations that numerically confirm the fusion mechanism for quasiparticles. Thus, for instance, two quasiholes plus one electron of charge $e$ lead to an exact quasielectron of fractional charge $e/3$, and exchange statistics $1/3$, in a $ν=1/3$ Laughlin fluid. We express, in a compact manner, the sequence of (both bosonic and fermionic) Laughlin second-quantized states highlighting the lack of local condensation. Furthermore, we present a rigorous constructive subspace bosonization dictionary for the bulk fluid and establish universal long-distance behavior of edge excitations by formulating a conjecture based on the DNA, or root state, of the FQH fluid.
description: 17 pages, 4 figures
Impact of Coulomb Scattering on Argon Plasma Based Thermionic Converter Performance
Creators: name: Groenewald, Roelof E.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: Particle-in-cell (PIC) simulations were performed to study the impact of Coulomb scattering on the performance of argon plasma based thermionic converters. Using a simplified model, studies from the 1970's have concluded that plasma resistance, brought on by Coulomb collisions, causes a shift in the IV-curves of thermionic converters that use an argon plasma to mitigate space charge, thereby strongly limiting their electricity generation capability. In this work the impact of Coulomb collisions in such devices were studied as a function of the relative electrical potential between the electrodes, with higher fidelity through the use of a fully kinetic approach (PIC). This revealed that earlier reports overestimated the negative impact of Coulomb collisions around the flat-band potential. The results of the simulations are also used to comment on the validity of the assumptions made in the simplified model.
Inequalities and bilipschitz conditions for triangular ratio metric
Creators: name: Hariri, Parisa
name: Vuorinen, Matti
name: Zhang, Xiaohui
Publisher: name: arXiv
Year: 2014
Subjects: subject: Metric Geometry (math.MG)
subject: FOS: Mathematics
subject: 51M10, 30C65

description: Let $G \subsetneq \mathbb{R}^n$ be a domain and let $d_1$ and $d_2$ be two metrics on $G$. We compare the geometries defined by the two metrics to each other for several pairs of metrics. The metrics we study include the distance ratio metric, the triangular ratio metric and the visual angle metric. Finally we apply our results to study Lipschitz maps with respect to these metrics.
description: 21 pages, 3 figures
Additional file 5: of RNA helicase p68 deploys Î˛-catenin in regulating RelA/p65 gene expression: implications in colon cancer
Creators: name: Veenita Khare
name: Shaheda Tabassum
name: Uttara Chatterjee
name: Sandip Chatterjee
name: Ghosh, Mrinal
Publisher: name: Figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Table S1. List of primers used in the study. (DOCX 19 kb)
Additional file 1 of Development and validation of an early warning model for hospitalized COVID-19 patients: a multi-center retrospective cohort study
Creators: name: Smit, Jim M.
name: Krijthe, Jesse H.
name: Tintu, Andrei N.
name: Endeman, Henrik
name: Ludikhuize, Jeroen
name: van Genderen, Michel E.
name: Hassan, Shermarke
name: El Moussaoui, Rachida
name: Westerweel, Peter E.
name: Goekoop, Robbert J.
name: Waverijn, Geeke
name: Verheijen, Tim
name: den Hollander, Jan G.
name: de Boer, Mark G. J.
name: Gommers, Diederik A. M. P. J.
name: van der Vlies, Robin
name: Schellings, Mark
name: Carels, Regina A.
name: van Nieuwkoop, Cees
name: Arbous, Sesmu M.
name: van Bommel, Jasper
name: Knevel, Rachel
name: de Rijke, Yolanda B.
name: Reinders, Marcel J. T.
Publisher: name: figshare
Year: 2022
Subjects: subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Science Policy

description: Additional file 1. Appendices.
Additional file 1 of Promoter conservation in HDACs points to functional implications
Creators: name: Boltz, Toni
name: Khuri, Sawsan
name: Wuchty, Stefan
Publisher: name: Figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: : Table S1 Tissue to System classification. (DOCX 17 kb)
On a minimal set of generators for the polynomial algebra of five variables as a module over the Steenrod algebra
Creators: name: Phuc, Dang Vo
name: Sum, Nguyen
Publisher: name: arXiv
Year: 2015
Subjects: subject: Algebraic Topology (math.AT)
subject: FOS: Mathematics
subject: 55S10 (Primary), 55S05, 55T15 (Secondary)

description: Denote by $P_k$ the graded polynomial algebra $\mathbb F_2[x_1,x_2,\ldots ,x_k]$ over the prime field of two elements, $\mathbb F_2$, with the degree of each $x_i$ being 1. We study the Peterson hit problem of determining a minimal set of generators for $P_k$ as a module over the mod-$2$ Steenrod algebra, $\mathcal{A}.$ In this paper, we explicitly determine a minimal set of $\mathcal{A}$-generators for $P_k$ in the case $k=5$ and the degree $4(2^d - 1)$ with $d$ an arbitrary positive integer.
description: 21 pages, This is a revision of a preprint of Quy Nhon University, Viet Nam, 2013. A shorter version of this paper was accepted for publication in Acta Mathematica Vietnamica. arXiv admin note: text overlap with arXiv:1412.3309
Double nested Hilbert schemes and the local stable pairs theory of curves
Creators: name: Monavari, Sergej
Publisher: name: arXiv
Year: 2021
Subjects: subject: Algebraic Geometry (math.AG)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Mathematics
subject: FOS: Physical sciences
subject: 14N35

description: We propose a variation of the classical Hilbert scheme of points - the double nested Hilbert scheme of points - which parametrizes flags of zero-dimensional subschemes whose nesting is dictated by a Young diagram. Over a smooth quasi-projective curve, we compute the generating series of topological Euler characteristic of these spaces, by exploiting the combinatorics of reversed plane partitions. Moreover, we realize this moduli space as the zero locus of a section of a vector bundle over a smooth ambient space, which therefore admits a virtual fundamental class. We apply this construction to the stable pair theory of a local curve, that is the total space of the direct sum of two line bundles over a curve. We show that the invariants localize to virtual intersection numbers on double nested Hilbert scheme of points on the curve, and that the localized contributions to the invariants are controlled by three universal series for every Young diagram, which can be explicitly determined after the anti-diagonal restriction of the equivariant parameters. Under the anti-diagonal restriction, the invariants are matched with the Gromov-Witten invariants of local curves of Bryan-Pandharipande, as predicted by the MNOP correspondence. Finally, we discuss $K$-theoretic refinements à la Nekrasov-Okounkov.
description: 46 pages, comments welcome!
Remarkably robust and correlated coherence and antiferromagnetism in (Ce$_{1-x}$La$_x$)Cu$_2$Ge$_2$
Creators: name: Hodovanets, H.
name: Bud'ko, S. L.
name: Straszheim, W. E.
name: Taufour, V.
name: Mun, E. D.
name: Kim, H.
name: Flint, R.
name: Canfield, P. C.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We present magnetic susceptibility, resistivity, specific heat, and thermoelectric power measurements on (Ce$_{1-x}$La$_x$)Cu$_2$Ge$_2$ single crystals (0 $\leq x\leq$ 1). With La substitution, the antiferromagnetic temperature $T_N$ is suppressed in an almost linear fashion and moves below 0.36 K, the base temperature of our measurements for $x>$ 0.8. Surprisingly, in addition to robust antiferromagnetism, the system also shows low temperature coherent scattering below $T_{coh}$ up to $\sim$ 0.9 of La, indicating a small percolation limit $\sim$ 9$\%$ of Ce that separates a coherent regime from a single-ion Kondo impurity regime. $T_{coh}$ as a function of magnetic field was found to have different behavior for $x$< 0.9 and $x$> 0.9. Remarkably, $(T_{coh})^2$ at $H$ = 0 was found to be linearly proportional to $T_N$. The jump in the magnetic specific heat $δC_{m}$ at $T_N$ as a function of $T_K/T_N$ for (Ce$_{1-x}$La$_x$)Cu$_2$Ge$_2$ follows the theoretical prediction based on the molecular field calculation for the $S$ = 1/2 resonant level model.
Additional file 1 of Definitive-intent uniform megavoltage fractioned radiotherapy protocol for presumed canine intracranial gliomas: retrospective analysis of survival and prognostic factors in 38 cases (2013–2019)
Creators: name: Debreuque, M.
name: P. De Fornel
name: I. David
name: F. Delisle
name: M. N. Ducerveau
name: P. Devauchelle
name: J. L. Thibaud
Publisher: name: figshare
Year: 2020
Subjects: Medicine
Cell Biology
Biotechnology
Cancer

description: Additional file 1. Clinical improvement at the end of the RT protocol for 30 dogs initially presenting seizures.