cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
MSCA-DN-RBP-ReguNet_Deliverable 6.3-Framework for Open Science Practices_v3.pdf
Creators: name: POSADO, ADRIAN
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 320699
subject: Medical biotechnology not elsewhere classified

description: The RBP-ReguNet project is committed to upholding the principles of Open Science, promoting transparency, collaboration, and accessibility in the implementation of the research practices. This framework outlines the measures that will be implemented to embed Open Science principles throughout the project's lifecycle, from research and data management to publication, dissemination and exploitation.
The framework emphasizes early and open sharing of research findings through preprints, ensuring that data is disseminated promptly and openly. It also mandates the development of a comprehensive Data Management Plan (DMP) adhering to FAIR principles (Findable, Accessible, Interoperable, and Reusable) to ensure data integrity and accessibility, and relates to the Gender Equality Plan (GEP) defined in Deliverable 6.2.
Additional file 9 of Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.)
Creators: name: Bernard, Anthony
name: Marrano, Annarita
name: Donkpegan, Armel
name: Brown, Patrick
name: Leslie, Charles
name: Neale, David
name: Lheureux, Fabrice
name: Dirlewanger, Elisabeth
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Plant Biology

description: Additional file 9: Figure S2. Density plots showing the two-year data related to phenological traits in Julian days for the 170 accessions of the GWAS panel.
title: A study of the synthesis of CoAI₂O₄ and the inducement of reactions and rearrangements in the solid state by mechanical milling.
Creators: name: Wynn, Paul G
Publisher: name: The Open University
Year: 2006

description: The nature of commercial samples of Co3O4, y-AI(OH)3 y-AIO(OH) and a-Al2O3 have been examined and the phase changes undergone by these materials as a function of heating in air examined ex situ and in situ by X-ray powder diffraction and by thermal analysis. The thermally induced reaction between the pre-milled cobalt- and aluminium-containing species, to form CoAI2O4 with a spinel-related structure, has been investigated. Pre-milling of the reactants facilitates the formation of CoAI2O4 in shorter periods of time. An attempt to produce a series of phases in the solid solution series CoxAI3-xO4 was not successful.
 Nanoparticle calcium stannate (CaSnO3) and calcium titanate (CaTiO3) have been prepared by the mechanical milling of mixtures of calcium (II) oxide with tin (IV) oxide or titanium (IV) oxide. The reaction of the rutile form of titanium (IV) oxide with calcium (II) oxide is faster than that between the anatase modification of titanium (IV) oxide and calcium (II) oxide.
Nanostructured partially inverse spinel-related zinc ferrite (ZnFe2O4) particles have been synthesised from bulk normal spinel-related ZnFe2O4 by means of mechanical milling using a planetary ball mill. This process is shown by a combination of X-ray powder diffraction and Mossbauer spectroscopy to result in a rearrangement of the zinc and iron ions in the A and B sub lattices with the resultant change of magnetic properties from antiferromagnetic to ferromagnetic or ferrimagnetic.
The changes in the local coordination of aluminium in y-AI(OH)3 when milled with zinc oxide has been monitored by 27AI MAS NMR spectroscopy. The results give evidence for the onset of the formation of a precursor to spinel-related ZnAl2O4 and may have implications for the more facile formation of CoAI2O4 by the calcination of pre-milled mixtures of cobalt- and aluminium-containing oxides.
Primordial nucleosynthesis with varying fundamental constants: Improved constraints and a possible solution to the Lithium problem
Creators: name: Clara, M. T.
name: Martins, C. J. A. P.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Primordial nucleosynthesis is an observational cornerstone of the Hot Big Bang model and a sensitive probe of physics beyond the standard model. Its success has been limited by the so-called Lithium problem, for which many solutions have been proposed. We report on a self-consistent perturbative analysis of the effects of variations in nature's fundamental constants, which are unavoidable in most extensions of the standard model, on primordial nucleosynthesis, focusing on a broad class of Grand Unified Theory models. A statistical comparison between theoretical predictions and observational measurements of ${}^4$He, D, ${}^3$He and, ${}^7$Li consistently yields a preferred value of the fine-structure constant $α$ at the nucleosynthesis epoch that is larger than the current laboratory one. The level of statistical significance and the preferred extent of variation depend on model assumptions but the former can be more than four standard deviations, while the latter is always compatible with constraints at lower redshifts. If Lithium is not included in the analysis, the preference for a variation of $α$ is not statistically significant. The abundance of ${}^3$He is relatively insensitive to such variations. Our analysis highlights a viable and physically motivated solution to the Lithium problem, which warrants further study.
description: 8 pages, 3 figures; Astronomy & Astrophysics Letters (in press)
The Geometry of ZZ-branes
Creators: name: Ambjorn, J.
name: Arianos, S.
name: Gesser, J. A.
name: Kawamoto, S.
Publisher: name: arXiv
Year: 2004
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We show how non-compact (quantum 2d AdS) space-time emerges for specific ratios of the square of the boundary cosmological constant to the cosmological constant in 2d Euclidean quantum gravity.
description: 12 pages, 1 figure
Causal Structure and Gravitational Waves in Brane World Cosmology
Creators: name: Ichiki, Kiyotomo
name: Nakamura, Kouji
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Astrophysics (astro-ph)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: The causal structure of the flat brane universe of RSII type is re-investigated to clarify the boundary conditions for stochastic gravitational waves. In terms of the Gaussian normal coordinate of the brane, a singularity of the equation for gravitational waves appears in the bulk. We show that this singularity corresponds to the ``seam singularity'' which is a singular subspace on the brane universe. Based upon the causal structure, we discuss the boundary conditions for gravitational waves in the bulk. Introducing a null coordinate, we propose a numerical procedure to solve gravitational waves with appropriate boundary conditions and show some examples of our numerical results. This procedure could be also applied in scalar type perturbations. The problem in the choice of the initial condition for gravitational waves is briefly discussed.
description: 9 pages, 6 figures, accepted for publication in PRD; this version includes the referee's suggestions and expanded discussion on our numerical scheme
Additional file 8 of Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.)
Creators: name: Bernard, Anthony
name: Marrano, Annarita
name: Donkpegan, Armel
name: Brown, Patrick
name: Leslie, Charles
name: Neale, David
name: Lheureux, Fabrice
name: Dirlewanger, Elisabeth
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Plant Biology

description: Additional file 8: Figure S1. Scatter plots showing the two-year data related to phenological traits in Julian days for the 170 accessions of the GWAS panel.
Callialasporites Sukh-Dev 1961
Creators: name: Legrand, Julien
name: Pons, Denise
name: Nishida, Harufumi
name: Yamada, Toshihiro
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Plantae
Callialasporites

description: Genus Callialasporites Sukh-Dev, 1961 emend. Potonié, 1966
TYPE SPECIES. — Callialasporites trilobatus (Balme, 1957) Sukh-Dev, 1961.
description: Published as part of Legrand, Julien, Pons, Denise, Nishida, Harufumi & Yamada, Toshihiro, 2011, Barremian palynofloras from the Ashikajima and Kimigahama formations (Choshi Group, Outer Zone of south-west Japan), pp. 87-135 in Geodiversitas 33 (1) on page 112, DOI: 10.5252/g2011n1a6, http://zenodo.org/record/4597011
Additional file 1 of Parthenogenetic mosaicism: generation via second polar body retention and unmasking of a likely causative PER2 variant for hypersomnia
Creators: name: Masunaga, Yohei
name: Kagami, Masayo
name: Kato, Fumiko
name: Usui, Takeshi
name: Yonemoto, Takako
name: Mishima, Kazuo
name: Fukami, Maki
name: Aoto, Kazushi
name: Hirotomo Saitsu
name: Ogata, Tsutomu
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Developmental Biology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 1. Table S1: The results of microsatellite analysis. Table S2: Association of sleep-wake phenotypes with SNPs in PER2. Table S3: Primers utilized in this study. Fig. S1: Array-based copy-number and BAF analyses for each chromosome, using CytoScan HD. Fig. S2: Parthenogenetic mosaicism mediated by the second polar body retention. Fig. S3: Generation mechanism of the parthenogenetic mosaicism in the patient previously described by Yamazawa et al. Fig. S4: Generation mechanism of the androgenetic mosaicism in the patient described by Yamazawa et al. Fig. S5: The p.Ser662Gly PER2 variant identified in a dominantly inherited advanced sleep-wake phase disorder (ASWPD). Note: Calculation of the parthenogenetic cell frequency in leukocytes and salivary cells.
title: PIEZO1 channels in cutaneous free nerve endings: novel insights into itch-scratch-mechanisms
Creators: name: Pereira, Manuel P.
name: Wiegmann, Henning
name: Ständer, Sonja
Publisher: name: University of Muenster, Institutional Repository MIAMI
Year: 2025
Subjects: subject: 610 Medicine and health

description: Finanziert über die DEAL-Vereinbarung mit Wiley, Springer oder Elsevier 2019–2023.
Mechanics of bioinspired fiber reinforced elastomers
Creators: name: Chatterjee, Aritra
name: Chahare, Nimesh R.
name: Kondaiah, Paturu
name: Gundiah, Namrata
Publisher: name: arXiv
Year: 2019
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Tissues and Organs (q-bio.TO)
subject: FOS: Physical sciences
subject: FOS: Biological sciences

description: Fiber reinforcement is a crucial attribute of soft bodied muscular hydrostats that have the ability to undergo large deformations and maintain their posture. Helically wound fibers around the cylindrical worm body help control the tube diameter and length. Geometric considerations show that a fiber winding angle of 54.7 degrees, called the magic angle, results in a maximum enclosed volume. Few studies have explored the effects of differential fiber winding on the large deformation mechanics of fiber reinforced elastomers (FRE). We fabricated FRE materials in transversely isotropic layouts varying from 0-90 degrees using a custom filament winding technique and characterized the nonlinear stress-strain relationships using uniaxial and equibiaxial experiments. We used these data within a continuum mechanical framework to propose a novel constitutive model for incompressible FRE materials with embedded extensible fibers. The model includes individual contributions from the matrix and fibers in addition to coupled terms in strain invariants, I1 and I4. The deviatoric stress components show inversion at fiber orientation angles near the magic angle in the FRE composites. These results are useful in soft robotic applications and in the biomechanics of fiber reinforced tissues such as the myocardium, arteries and skin.
description: 6 figures, 2 tables
Evidence of Halo Microlensing in M31
Creators: name: Uglesich, Robert R.
name: Crotts, Arlin P. S.
name: Baltz, Edward A.
name: de Jong, Jelte T. A.
name: Boyle, Richard P.
name: Corbally, Christopher J.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We report results from intensive monitoring of two fields on either side of M31,emphasizing microlensing involving stars and masses in M31. These results stem from the three-year VATT/Columbia survey of variability on 3d to 2m timescales. Observations were conducted intensively from 1997-1999, with baselines 1995-now,at the Vatican Advanced Technology Telescope, MDM 1.3-meter, and Isaac Newton telescopes, totaling about 200 epochs. The two fields cover 560 square arcmin total, along the minor axis on either side of M31. Candidate microlensing events are subject to tests to distinguish microlenses from variable stars. Fourprobable microlensing events total, compared to carefully computed event rate and efficiency models, indicate a marginally significant microlensing activity above expectations for the stellar lenses alone in M31 (and the Galaxy) acting as lenses. Maximum likelihood analyses of the event distribution in timescale and across the face of M31 indicates a microlensing dark matter halo fraction consistent with that seen in our Galaxy towards the LMC (Alcock et al. 2000). For a nearly singular isothermal sphere model, we find a microlensing halo mass fraction f=0.29 +0.30/-0.13 of total dark matter, and a poorly constrained lensing component mass 0.02 to 1.5 solar mass, 1 sigma limits). This study is the prototype for a larger one approaching completion; between them there is significant evidence for asymmetry in the distribution of microlensing events across the face of M31, and a large population of halo microlensing objects. (Abridged)
description: 25 pages, LaTex; 11 figures. Revised, refereed manuscript resubmitted to The Astrophysical Journal. Corrected Figure 8 and other minor points
Dicrocheles Krantz & Khot 1962
Creators: name: Hernandes, Fabio A.
name: Huff, Jeremy C.
name: Oconnor, Barry M.
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Mesostigmata
Otopheidomenidae
Dicrocheles

description: Genus Dicrocheles Krantz & Khot, 1962
Type species: Myrmonyssus phalaenodectes Treat, 1954
description: Published as part of Hernandes, Fabio A., Huff, Jeremy C. & Oconnor, Barry M., 2011, Catalog of the Acari types deposited in the American Museum of Natural History, New York (Arthropoda: Arachnida), pp. 1-50 in Zootaxa 2936 (1) on page 3, DOI: 10.11646/zootaxa.2936.1.1, http://zenodo.org/record/5284434
Developing a measure for layered stigma
Creators: name: Metcalfe, Quinn
Publisher: name: The University of British Columbia
Year: 2016

description: The current models for stigma measurement are disease-specific and created for use with adults, despite the fact that stigma may be experienced also by adolescents and may be layered, and not simply the result of one disease. Stigma in adolescents may effect their life outcome, as many emotional and social changes are happening at this point in life, therefore developing a measure to address stigma in youth is important. Focus groups of youth will be chosen based on sexual orientation, ethnic minority, street involvement, visible physical disability and history of sexual exploitation, with an eye to ensuring the sample contains individuals experiencing layered stigma. The result of research will be an adolescent- specific measure of perceived stigma, enacted stigma and internalized stigma that can be used to understand how stigma effects the perceptions, risk-behaviours and futures of youth, and to develop stigma reduction strategies.
Heterochlorota Soula 2002
Creators: name: Paucar-Cabrera, Aura
Publisher: name: Zenodo
Year: 2005
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Rutelidae
Heterochlorota

description: Heterochlorota Soula, 2002
 Heterochlorota mathildae (Ohaus, 1908)
 Distribution. Recorded at 1216–2000 m. Temperate, subtropical east.
 Locality Data. 3 specimens examined from QCAZ. Additional record from Machatschke (1972): Loja (3): La Toma. Napo (1): Cosanga.
 Temporal Data. February (3).
description: Published as part of Paucar-Cabrera, Aura, 2005, A catalog and distributional analysis of the Rutelinae (Coleoptera: Scarabaeidae) of Ecuador, pp. 1-92 in Zootaxa 948 (1) on page 37, DOI: 10.11646/zootaxa.948.1.1, http://zenodo.org/record/5046250
Internal Wave Attractors in 3D Geometries : a dynamical systems approach
Creators: name: Pillet, Grimaud
name: Maas, Leo
name: Dauxois, Thierry
Publisher: name: arXiv
Year: 2019
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: We study the propagation in three dimensions of internal waves using ray tracing methods and traditional dynamical systems theory. The wave propagation on a cone that generalizes the Saint Andrew's cross justifies the introduction of an angle of propagation that allows to describe the position of the wave ray in the horizontal plane. Considering the evolution of this reflection angle for waves that repeatedly reflect off an inclined slope, a new trapping mechanism emerges that displays the tendency to align this angle with the upslope gradient. In the rather simple geometry of a translationally invariant canal, we show first that this configuration leads to trapezium-shaped attractors, very similar to what has been extensively studied in two-dimensions. However, we also establish a direct link between the trapping and the existence of two-dimensional attractors. In a second stage, considering a geometry that is not translationally invariant, closer to realistic configurations, we prove that although there are no two-dimensional attractors, one can find a structure in three-dimensional space with properties similar to internal wave attractors: a one-dimensional attracting manifold. Moreover, as this structure is unique, it should be easy to visualize in laboratory experiments since energy injected in the domain would eventually be confined to a very thin region in three-dimensional space, for which reason it is called a super-attractor.
title: Simple principal components.
Creators: name: Sun, Linjuan
Publisher: name: The Open University
Year: 2006

description: A new technique, simple principal component analysis (SCA), is addressed by Vines (2000) to enhance the interpretation of principal components (PCs). The SCA algorithm seeks integer valued loadings vectors that have properties close to the loading vectors obtained from the principal component analysis (PCA). Simulation is used to compare the different implementations and show that SCA is better than PCA in some cases. In this thesis, I first pin down the link between SCA with Jacobi methods, then develop the concepts of a combining approach and a hybrid approach.
The results produced by SCA methods can be very good approximation to corresponding PCs whatever the structures of the data, and simple components are generally easier to interpret than PCs. In particular, the sample simulation results of SCA are generally better than PCA for any simple structures. SCA2, SCA5 and SCA6 are the best SCA methods. As the dimension of the data increases, SCA5 and SCA6 are similar. If necessary, combined and hybrid approaches can make the results of SCA more accurate. However, the results of hybrid methods are orthogonal but the combined results are generally not orthogonal.
Superconducting fluctuation corrections to ultrasound attenuation in layered superconductors
Creators: name: Mar'enko, M. S.
name: Bourbonnais, C.
name: Tremblay, A. -M. S.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We consider the temperature dependence of the sound attenuation and sound velocity in layered impure metals due to superconducting fluctuations of the order parameter above the critical temperature. We obtain the dependence on material properties of these fluctuation corrections in the hydrodynamic limit, where the electron mean free path is much smaller than the wavelength of sound and where the electron collision rate is much larger than the sound frequency. For longitudinal sound propagating perpendicular to the layers, the open Fermi surface condition leads to a suppression of the divergent contributions to leading order, in contrast with the case of paraconductivity. The leading temperature dependent corrections, given by the Aslamazov-Larkin, Maki-Thompson and density of states terms, remain finite as T->Tc. Nevertheless, the sensitivity of new ultrasonic experiments on layered organic conductors should make these fluctuations effects measurable.
description: 13 pages, 6 figures. Accepted for PRB. Added discussion on incoherent interlayer tunneling and other small modifications suggested by referees
Completeness of the Gaia-verse I: when and where were Gaia's eyes on the sky during DR2?
Creators: name: Boubert, Douglas
name: Everall, Andrew
name: Holl, Berry
Publisher: name: arXiv
Year: 2020
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: The Gaia space mission is crafting revolutionary astrometric, photometric and spectroscopic catalogues that will allow us to map our Galaxy, but only if we know the completeness of this Gaia-verse of catalogues: what stars does it contain and what stars is it missing? We argue that the completeness is driven by Gaia's spinning-and-precessing scanning law and will apply this principle to the Gaia-verse over this series. We take a first step by identifying the periods in time that did not contribute any measurements to Gaia DR2; these gaps create ribbons of incompleteness across the sky that will bias any study that ignores them, although some of these gaps may be filled in future data releases. Our first approach was to use the variable star photometry to identify the 94 gaps longer than 1% of a day. Our second approach was to predict the number of observations of every point on the sky, which in comparison to the reported number of detections revealed additional gaps in the astrometry and spectroscopy. Making these predictions required us to make the most precise, publicly-available determination of the Gaia scanning law. Using this scanning law, we further identified that most stars fainter than $G=22$ in DR2 have spurious magnitudes due to a miscalibration resulting from a thunderstorm over Madrid. Our list of gaps and precision scanning law will allow astronomers to know when Gaia's eye was truly on their binary star, exoplanet or microlensing event during the time period of the second data release.
description: 17 pages, submitted to MNRAS. The Completeness of the Gaia-verse project website can be found at http://www.gaiaverse.space . The Gaia DPAC has made an official list of gaps available at https://www.cosmos.esa.int/web/gaia/dr2-data-gaps
The effects of a magnetic barrier and a nonmagnetic spacer in tunnel structures
Creators: name: Shokri, Ali A.
name: Saffarzadeh, Alireza
Publisher: name: arXiv
Year: 2004
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The spin-polarized transport is investigated in a new type of magnetic tunnel junction which consists of two ferromagnetic electrodes separated by a magnetic barrier and a nonmagnetic metallic spacer. Based on the transfer matrix method and the nearly-free-electron-approximation the dependence of the tunnel magnetoresistance (TMR) and electron-spin polarization on the nonmagnetic layer thickness and the applied bias voltage are studied theoretically. The TMR and spin polarization show an oscillatory behavior as a function of the spacer thickness and the bias voltage. The oscillations originate from the quantum well states in the spacer, while the existence of the magnetic barrier gives rise to a strong spin polarization and high values of the TMR. Our results may be useful for the development of spin electronic devices based on coherent transport.
description: 15 pages, 5 figures
A quantum search decoder for natural language processing
Creators: name: Bausch, Johannes
name: Subramanian, Sathyawageeswar
name: Piddock, Stephen
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Research Article
Recurrent neural networks
Quantum algorithms
Quantum search
Parsing
Natural language processing
Quantum speedups

description: Funder: Science and Engineering Research Board; doi: https://doi.org/10.13039/501100001843
description: Funder: Cambridge Commonwealth Trust; doi: https://doi.org/10.13039/501100003342
description: Abstract: Probabilistic language models, e.g. those based on recurrent neural networks such as long short-term memory models (LSTMs), often face the problem of finding a high probability prediction from a sequence of random variables over a set of tokens. This is commonly addressed using a form of greedy decoding such as beam search, where a limited number of highest-likelihood paths (the beam width) of the decoder are kept, and at the end the maximum-likelihood path is chosen. In this work, we construct a quantum algorithm to find the globally optimal parse (i.e. for infinite beam width) with high constant success probability. When the input to the decoder follows a power law with exponent k > 0, our algorithm has runtime Rnf(R, k), where R is the alphabet size, n the input length; here f < 1/2, and f→0 exponentially fast with increasing k, hence making our algorithm always more than quadratically faster than its classical counterpart. We further modify our procedure to recover a finite beam width variant, which enables an even stronger empirical speedup while still retaining higher accuracy than possible classically. Finally, we apply this quantum beam search decoder to Mozilla’s implementation of Baidu’s DeepSpeech neural net, which we show to exhibit such a power law word rank frequency.
Category Theory and Higher Dimensional Algebra: potential descriptive tools in neuroscience
Creators: name: Brown, R.
name: Porter, T.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Category Theory (math.CT)
subject: FOS: Mathematics

description: We explain the notion of colimit in category theory as a potential tool for describing structures and their communication, and the notion of higher dimensional algebra as a potential yoga for dealing with processes and processes of processes.
description: 11 pages, Submitted to the Proceedings of the International Conference on Neuroscience, Delhi, Feb 24-26, 2003 v2. small corrections, and updated references. 10 Feb 2008
Homonyx Guerin-Meneville 1839
Creators: name: Paucar-Cabrera, Aura
Publisher: name: Zenodo
Year: 2005
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Rutelidae
Homonyx

description: Homonyx Guérin­Méneville, 1839
 Homonyx feyeri Ohaus, 1913 *
 Distribution. Recorded at 750 m. Tropical east.
 Locality Data. No specimens examined. Record from Ohaus (1913): Morona Santiago (1): Gualaquiza.
 Temporal Data. No data.
description: Published as part of Paucar-Cabrera, Aura, 2005, A catalog and distributional analysis of the Rutelinae (Coleoptera: Scarabaeidae) of Ecuador, pp. 1-92 in Zootaxa 948 (1) on page 37, DOI: 10.11646/zootaxa.948.1.1, http://zenodo.org/record/5046250
Quasipolynomial generalization of Lotka-Volterra mappings
Creators: name: Hernández-Bermejo, Benito
name: Brenig, Léon
Publisher: name: arXiv
Year: 2019
Subjects: subject: Dynamical Systems (math.DS)
subject: Biological Physics (physics.bio-ph)
subject: Populations and Evolution (q-bio.PE)
subject: FOS: Mathematics
subject: FOS: Physical sciences
subject: FOS: Biological sciences

description: In the last years it has been shown that Lotka-Volterra mappings constitute a valuable tool from both the theoretical and the applied points of view, with developments in very diverse fields such as Physics, Population Dynamics, Chemistry and Economy. The purpose of this work is to demonstrate that many of the most important ideas and algebraic methods that constitute the basis of the quasipolynomial formalism (originally conceived for the analysis of ordinary differential equations) can be extended into the mapping domain. The extension of the formalism into the discrete-time context is remarkable as far as the quasipolynomial methodology had never been shown to be applicable beyond the differential case. It will be demonstrated that Lotka-Volterra mappings play a central role in the quasipolynomial formalism for the discrete-time case. Moreover, the extension of the formalism into the discrete-time domain allows a significant generalization of Lotka-Volterra mappings as well as a whole transfer of algebraic methods into the discrete-time context. The result is a novel and more general conceptual framework for the understanding of Lotka-Volterra mappings, as well as a new range of possibilities that becomes open not only for the theoretical analysis of Lotka-Volterra mappings and their generalizations, but also for the development of new applications.
Alisporites Daugherty, 1941 emend. Rouse 1959
Creators: name: Legrand, Julien
name: Pons, Denise
name: Nishida, Harufumi
name: Yamada, Toshihiro
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Lycopodiales
Alisporites

description: Genus Alisporites Daugherty, 1941 emend. Rouse, 1959
TYPE SPECIES. — Alisporites opii Daugherty, 1941.
description: Published as part of Legrand, Julien, Pons, Denise, Nishida, Harufumi & Yamada, Toshihiro, 2011, Barremian palynofloras from the Ashikajima and Kimigahama formations (Choshi Group, Outer Zone of south-west Japan), pp. 87-135 in Geodiversitas 33 (1) on page 112, DOI: 10.5252/g2011n1a6, http://zenodo.org/record/4597011
Top, Higgs, diboson and electroweak fit to the Standard Model effective field theory
Creators: name: Ellis, John
name: Madigan, Maeve
name: Mimasu, Ken
name: Sanz, Veronica
name: You, Tevong
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Regular Article - Theoretical Physics
Effective Field Theories
Beyond Standard Model
Higgs Physics

description: Abstract: The search for effective field theory deformations of the Standard Model (SM) is a major goal of particle physics that can benefit from a global approach in the framework of the Standard Model Effective Field Theory (SMEFT). For the first time, we include LHC data on top production and differential distributions together with Higgs production and decay rates and Simplified Template Cross-Section (STXS) measurements in a global fit, as well as precision electroweak and diboson measurements from LEP and the LHC, in a global analysis with SMEFT operators of dimension 6 included linearly. We present the constraints on the coefficients of these operators, both individually and when marginalised, in flavour-universal and top-specific scenarios, studying the interplay of these datasets and the correlations they induce in the SMEFT. We then explore the constraints that our linear SMEFT analysis imposes on specific ultra-violet completions of the Standard Model, including those with single additional fields and low-mass stop squarks. We also present a model-independent search for deformations of the SM that contribute to between two and five SMEFT operator coefficients. In no case do we find any significant evidence for physics beyond the SM. Our underlying Fitmaker public code provides a framework for future generalisations of our analysis, including a quadratic treatment of dimension-6 operators.
Biotransformation of limonene to limonene-1,2-diol using an isolated fungus Lasiodiplodia pseudotheobromae IIIMF4013
Creators: name: Ayoub, Nargis
name: Lone, Bashir Ahmad
name: Shafeeq, Haseena
name: Kumari, Hema
name: Gupta, Prasoon
name: Gairola, Sumeet
name: Babu, Vikash
name: Ahmed, Zabeer
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Biochemistry
subject: Physical Sciences not elsewhere classified
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Monoterpenes are ubiquitous natural products produced by aromatic plants and have applications in cosmetics, food, flavor, and pharmaceutical industries. Chemical transformation of these monoterpenes to high-value products is challenging, but with the help of microbes, these low-value products are easily converted to high-value products. The present research curtails the development of a biotransformation process for the production of limonene-1,2-diol from limonene. After optimization of production parameters, almost complete conversion of limonene to limonene-1,2-diol was obtained (>99% purity). Further, the process was scaled up from shake flask to 30 L fermenter scale for limonene-1,2-diol production. The biotransformed product was analyzed using gas chromatography-mass spectrometry (GC-MS), 1D, and 2D nuclear magnetic resonance (NMR).
Additional file 1 of Assessment of respiratory dust exposure and lung functions among workers in textile mill (Thamine), Myanmar: a cross-sectional study
Creators: name: Oo, Thet Wai
name: Thandar, Mya
name: Htun, Ye Minn
name: Pa Pa Soe
name: Thant Zaw Lwin
name: Tun, Kyaw Myo
name: Zaw Myo Han
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 1. English language version of the questionnaire.
Additional file 1 of Clinical features of parainfluenza infections among young children hospitalized for acute respiratory illness in Amman, Jordan
Creators: name: Howard, Leigh M.
name: Rankin, Danielle A.
name: Spieker, Andrew J.
name: Wenying Gu
name: Haddadin, Zaid
name: Probst, Varvara
name: Herdi Rahman
name: Rendie McHenry
name: Pulido, Claudia Guevara
name: Williams, John V.
name: Faouri, Samir
name: Asem Shehabi
name: Khuri-Bulos, Najwa
name: Halasa, Natasha B.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: 60506 Virology
subject: Computational Biology

description: Additional file 1.
Secondary students’ values and perceptions of science-related careers: responses to vignette-based scenarios
Creators: name: Taber, Keith S.
name: Billingsley, Berry
name: Riga, Fran
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Original Paper
Student perceptions of careers
Extra-scientific values
Ethics and science education
Cultural values and science education
Emotional responses to science

description: Abstract: There has been concern about the attractiveness of science-based careers to many adolescent learners, and it has been suggested that school science may not always recognise or engage personal values that are important to young people in making life choices. The present study discusses interview comments made by upper secondary level students in England when 15 young people were asked to give their personal responses to brief vignettes describing scientific careers. Using an interview-about-scenarios approach, the students were asked about whether they would feel comfortable working in the scientific careers represented. The career areas were purposefully selected because they might be considered to potentially raise issues in relation to personal values or commitments that some students might hold. A range of student perceptions relating to the mooted careers were elicited (positive, negative and indifferent), but all of the participants raised issues that impacted on the acceptability or attractiveness of at least one of the mooted scientific careers, in terms of aspects of their own personal beliefs and values systems. It is recommended that teachers and career advisors should be aware of the range of value-related considerations that influence student views of science-related careers and should consider exploring aspects of science-based careers that link to values commonly shared by young people. This exploratory study also offers indications for directions for further research exploring how learners’ value systems impact upon their perceptions of science and scientific work.
Jeans instability in the linearized Burnett regime
Creators: name: Garcia-Colin, L. S.
name: Sandoval-Villalbazo, A.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Jeans instability is derived for the case of a low density self-gravitating gas beyond the Navier-Stokes equations. The Jeans instability criterium is shown to depend on a Burnett coefficient if the formalism is taken up to fourth order in the wave number. It is also shown that previously known viscosity corrections to the Jeans wave-number are enhanced if the full fourth order formalism is applied to the stability analysis.
description: 8 pages, no figures. Submitted to Physica A
University students’ epistemic profiles, conceptions of learning, and academic performance
Creators: name: Lonka, Kirsti
name: Ketonen, Elina
name: Vermunt, Jan D.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article
Epistemic beliefs
Epistemic profiles
Epistemic cognition
Approaches to learning
Conceptions of learning
Academic performance
Academic achievement
Cluster analysis
Latent profile analysis
Confirmatory factor analysis
University students
Teacher education
Engineering education
Higher education

description: Abstract: University students’ epistemic beliefs may have practical consequences for studying and success in higher education. Such beliefs constitute epistemic theories that may empirically manifest themselves as epistemic profiles. This study examined university students’ epistemic profiles and their relations to conceptions of learning, age, gender, discipline, and academic achievement. The participants were 1515 students from five faculties who completed questionnaires about epistemic beliefs, including a subsample who also completed a questionnaire that included conceptions of learning. We measured epistemic beliefs: reflective learning, collaborative knowledge-building, valuing metacognition, certain knowledge, and practical value. First, we analyzed structural validity by using confirmatory factor analysis. Second, we conducted latent profile analysis that revealed three epistemic profiles: Pragmatic (49%), reflective-collaborative (26%) and fact-oriented (25%). Then, we compared the conceptions of learning across the profiles as well as demographic information, credits, and grades. The profiles’ conceptions of learning varied: The reflective-collaborative group scored high on conception of learning named “construction of knowledge.” Its members were more likely to be females, teachers, and mature students, and they had the highest academic achievement. The fact-oriented group (mostly engineering/science students) scored highest on “intake of knowledge.” The pragmatic group scored highest on “use of knowledge:” During the second year, their academic achievement improved. In sum, the epistemic profiles were closely related to conceptions of learning and also associated with academic achievement.
The negative regulator SMAX1 controls mycorrhizal symbiosis and strigolactone biosynthesis in rice
Creators: name: Choi, Jeongmin
name: Lee, Tak
name: Cho, Jungnam
name: Servante, Emily K.
name: Pucker, Boas
name: Summers, William
name: Bowden, Sarah
name: Rahimi, Mehran
name: An, Kyungsook
name: An, Gynheung
name: Bouwmeester, Harro J.
name: Wallington, Emma J.
name: Oldroyd, Giles
name: Paszkowski, Uta.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article
/631/449
/631/449/2676
/631/449/2676/2061
/96/95
/38/91
/14/19
/38/77
/45
/45/70
article

description: Abstract: Most plants associate with beneficial arbuscular mycorrhizal (AM) fungi that facilitate soil nutrient acquisition. Prior to contact, partner recognition triggers reciprocal genetic remodelling to enable colonisation. The plant Dwarf14-Like (D14L) receptor conditions pre-symbiotic perception of AM fungi, and also detects the smoke constituent karrikin. D14L-dependent signalling mechanisms, underpinning AM symbiosis are unknown. Here, we present the identification of a negative regulator from rice, which operates downstream of the D14L receptor, corresponding to the homologue of the Arabidopsis thaliana Suppressor of MAX2-1 (AtSMAX1) that functions in karrikin signalling. We demonstrate that rice SMAX1 is a suppressor of AM symbiosis, negatively regulating fungal colonisation and transcription of crucial signalling components and conserved symbiosis genes. Similarly, rice SMAX1 negatively controls strigolactone biosynthesis, demonstrating an unexpected crosstalk between the strigolactone and karrikin signalling pathways. We conclude that removal of SMAX1, resulting from D14L signalling activation, de-represses essential symbiotic programmes and increases strigolactone hormone production.
Revisiting the TeV detection prospects for radio galaxies
Creators: name: Angioni, Roberto
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Radio galaxies host relativistic jets oriented away from our line of sight, making them challenging targets for Very High Energy (VHE, E$>$100 GeV) $γ$-ray detectors. Indeed, out of $\sim100$ extragalactic sources detected at $E>100$ GeV, only six are radio galaxies. The new Cherenkov Telescope Array (CTA) will provide order-of-magnitude improvements in sensitivity with respect to the present generation of ground-based $γ$-ray observatories, opening new frontiers for high-energy studies of radio galaxies. In a previous paper, we studied the CTA detection prospects of misaligned jets from the Third Fermi-LAT catalog (3FGL) sample. In this work, we take advantage of the expanded sample from the Fourth Fermi-LAT catalog (4FGL), including roughly double the number of sources. We simulate CTA observations of 41 $γ$-ray radio galaxies, extrapolating their GeV spectrum into the TeV range assuming different spectral shapes. We predict that the CTA will detect eleven new TeV radio galaxies with an observational campaign of 50 hours per source, under the realistic assumption of a spectral cutoff at 0.5 TeV. This would increase the sample of VHE radio galaxies by a factor of three, and result in the first detection of FR II radio galaxies at these energies. By simulating CTA observations with 5 hours exposure, we predict that two Fermi-LAT radio galaxies should already be within reach of current TeV observatories. Finally we have investigated the prospects for a CTA detection of extended VHE emission from the lobe-dominated FR I Fornax A, and predict that this will be possible for integration times $\gtrsim\!50$ hours. We conclude that the CTA will significantly impact our understanding of misaligned jets at TeV energies, allowing us to perform population studies and compare the two main radio galaxy subclasses for the first time in this energy band.
description: Accepted for publication in Astroparticle Physics. 19 pages (main text 11 pages), 3 figures, 4 tables
Alisporites australis de Jersey 1962
Creators: name: Legrand, Julien
name: Pons, Denise
name: Nishida, Harufumi
name: Yamada, Toshihiro
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Lycopodiales
Alisporites

description: Alisporites sp. cf. A. australis de Jersey, 1962
OCCURRENCE. — Ashikajima Fm.
DESCRIPTION
Bisaccate pollen grain. Central body spherical, scabrate. The sacci are reticulate and a little longer than the central body, probably hanging. Total width = 50 µm. Central body diameter = 25 µm. Saccates (length × width) = 40 × 10 µm.
REMARKS
This grain is morphologically very similar to Alisporites australis de Jersey, 1962 previously reported from the Triassic of Australia (de Jersey 1962).
BOTANICAL AFFINITIES
Gymnosperms, Pteridospermales?
description: Published as part of Legrand, Julien, Pons, Denise, Nishida, Harufumi & Yamada, Toshihiro, 2011, Barremian palynofloras from the Ashikajima and Kimigahama formations (Choshi Group, Outer Zone of south-west Japan), pp. 87-135 in Geodiversitas 33 (1) on pages 112-114, DOI: 10.5252/g2011n1a6, http://zenodo.org/record/4597011
Additional file 1 of Brain BOLD MRI O2 and CO2 stress testing: implications for perioperative neurocognitive disorder following surgery
Creators: name: W. Mutch
name: RenÃ©E El-Gabalawy
name: Ryner, Lawrence
name: Puig, Josep
name: Essig, Marco
name: Kilborn, Kayla
name: Fidler, Kelsi
name: M. Graham
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Cell Biology
subject: Neuroscience
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1: Supplemental File 1: An analysis from earlier non-published work providing evidence that BOLD imaging is a very robust proxy for CBF changes for the ET gas sequences used in this study when directly comparing CVR as assessed by both methodologies. The stability of blood pressure over the ET gas range studied is also discussed here.
THE MORPHOMETRIC CHARACTERISTICS AND MOLECULAR-GENETIC ANALYSIS OF ORYCTES NASICORNIS (LINNAEUS, 1758) DISTRIBUTED IN THE LOW HILLS OF KARAKALPAKSTAN
Creators: name: Yusupova, Amangul
Publisher: name: Zenodo
Year: 2025

description: This article presents an analysis of the morphometric characteristics and molecular-genetic results of Oryctes nasicornis (Linnaeus, 1758) distributed in the low hills of Karakalpakstan. Significant differences in the morphological structure between male and female representatives of Oryctes nasicornis were clearly identified. Although morphological identification remains one of the most widely used and generally accepted methods, it may lead to misidentifications due to intraspecific morphological variations. No nucleotide differences were observed within Oryctes nasicornis. However, molecular-genetic analysis revealed a 15.6% nucleotide divergence between Oryctes nasicornis and Oryctes rhinoceros based on sequences obtained from the GenBank database.