cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
MOESM7 of AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number
Creators: name: Newman, Aaron
name: Cooper, James
Publisher: name: figshare
Year: 2010
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Computational Biology

description: Additional file 7: AutoSOME implementation details. Input, SOM node topology, Ensemble averaging, Additional references (PDF 239 KB)
Hypericum peplidifolium A. Rich.
Creators: name: Zhou, Ya-Dong
name: Mwachala, Geoffrey
name: Hu, Guang-Wan
name: Wang, Qing-Feng
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Malpighiales
Hypericaceae
Hypericum
Hypericum peplidifolium

description: Hypericum peplidifolium A.Rich.  —
Habit: Herb.
Habitat: LMWF, LMDF, BZ, UMF, HZ; up to 3 600 m. Distribution: II.
 Voucher: Kamweti Track, Alt. 2 470 m, 1 Feb. 2015, SAJIT 003059 (HIB).
References: Bussmann (1993, 1994), Agnew (2013).
description: Published as part of Zhou, Ya-Dong, Mwachala, Geoffrey, Hu, Guang-Wan & Wang, Qing-Feng, 2022, Annotated checklist of the vascular plants of Mount Kenya, East Africa, pp. 1-108 in Phytotaxa 546 (1) on page 54, DOI: 10.11646/phytotaxa.546.1.1, http://zenodo.org/record/6550464
Croton macrostachyus Delile
Creators: name: Zhou, Ya-Dong
name: Mwachala, Geoffrey
name: Hu, Guang-Wan
name: Wang, Qing-Feng
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Malpighiales
Euphorbiaceae
Croton
Croton macrostachyus

description: Croton macrostachyus Hochst. ex Delile  —
Habit: Tree, small tree or shrub.
Habitat: LMWF, LMDF; up to 2 300 m. Distribution: II.
 Voucher: Lower Imenti Forest, Alt. 1 520 m, 8 Aug. 2015, SAHJIT 003862 (HIB).
References: Bussmann (1993, 1994), Bussmann & Beck (1995a, 1998), Gathaara (1999).
description: Published as part of Zhou, Ya-Dong, Mwachala, Geoffrey, Hu, Guang-Wan & Wang, Qing-Feng, 2022, Annotated checklist of the vascular plants of Mount Kenya, East Africa, pp. 1-108 in Phytotaxa 546 (1) on page 56, DOI: 10.11646/phytotaxa.546.1.1, http://zenodo.org/record/6550464
Canonical heights and entropy in arithmetic dynamics
Creators: name: Einsliedler, Manfred
name: Everest, Graham
name: Ward, Thomas
Publisher: name: arXiv
Year: 1999
Subjects: subject: Number Theory (math.NT)
subject: Dynamical Systems (math.DS)
subject: FOS: Mathematics
subject: 11G07;58F11

description: A system of transformations is associated to a rational point on an elliptic curve. The sequence entropy is connected to the canonical height, and in some cases there is a canonically defined quotient system whose entropy is the canonical height and for which the fibre entropy is accounted for by local heights at primes of bad reduction. The proofs use transcendence theory and a strong form of Siegel's theorem. We go on to extend these ideas to the morphic heights of Call and Goldstine.
description: 25 pages, no figures
Reference S8. Pollinators and roadsides: best management practices for managers and decision makers.
Creators: name: Entsminger, Edward D.
Publisher: name: figshare
Year: 2017
Subjects: subject: Botany
subject: 60299 Ecology not elsewhere classified
subject: FOS: Biological sciences

description: Reference S8. Hopwood J, Black S, Fleury S. 2016. Pollinators and roadsides: best management practices for managers and decision makers. U.S. Department of Transportation and the Federal Highway Administration (FHWA), Report No. FHWA-HEP-16-020. Found at http://dx.doi.org/10.5061/dryad.960dh; also available at https://www.environment.fhwa.dot.gov/ecosystems/Pollinators_Roadsides/BMPs_pollinators_roadsides.asp (5.76 MB PDF).
Using Torque to Understand Barred Galaxy Models
Creators: name: Petersen, Michael S.
name: Weinberg, Martin D.
name: Katz, Neal
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We track the angular momentum transfer in n-body simulations of barred galaxies by measuring torques to understand the dynamical mechanisms responsible for the evolution of the bar-disc-dark matter halo system. We find evidence for three distinct phases of barred galaxy evolution: assembly, secular growth, and steady-state equilibrium. Using a decomposition of the disc into orbital families, we track bar mass and angular momentum through time and correlate the quantities with the phases of evolution. We follow the angular momentum transfer between particles and identify the dominant torque channels. We find that the halo model mediates the assembly and growth of the bar for a high central density halo, and the outer disc mediates the assembly and growth of the bar in a low central density halo model. Both galaxies exhibit a steady-state equilibrium phase where the bar is neither lengthening nor slowing. The steady-state equilibrium results from the balance of torque between particles that are gaining and losing angular momentum. We propose observational metrics for barred galaxies that can be used to help determine the evolutionary phase of a barred galaxy, and discuss the implications of the phases for galaxy evolution as a whole.
description: Accepted for publication in MNRAS
Synapse efficiency diverges due to synaptic pruning following over-growth
Creators: name: Mimura, Kazushi
name: Kimoto, Tomoyuki
name: Okada, Masato
Publisher: name: arXiv
Year: 2002
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Quantitative Biology (q-bio)
subject: FOS: Physical sciences
subject: FOS: Biological sciences

description: In the development of the brain, it is known that synapses are pruned following over-growth. This pruning following over-growth seems to be a universal phenomenon that occurs in almost all areas -- visual cortex, motor area, association area, and so on. It has been shown numerically that the synapse efficiency is increased by systematic deletion. We discuss the synapse efficiency to evaluate the effect of pruning following over-growth, and analytically show that the synapse efficiency diverges as O(log c) at the limit where connecting rate c is extremely small. Under a fixed synapse number criterion, the optimal connecting rate, which maximize memory performance, exists.
description: 15 pages, 16 figures
Створення багатовимірного OLAP-куба послуг готельно-туристичного комплексу Прикарпаття
Creators: name: , Лозован
name: Свелеба
name: Катеринчук
name: Куньо
name: Карпа
Publisher: name: Zenodo
Year: 2019
Subjects: Готельно туристичні комплекси прикартаття
Інформаційні технології
Бази даних
OLAP куб

description: В. Лозован, С. Свелеба, І. Катеринчук, І. Куньо, І. Карпа. // Створення багатовимірного OLAP - куба послуг готельно-туристичного комплексу прикарпаття // Електроніка та інформаційні технології // VIII науково - практична конференція 27–30 серпня 2016 р. // Львів – Чинадієво, Україна. С. 98-101. DOI: http://doi.org/10.5281/zenodo.3417914
Reference S9. Promoting native plant life along Mississippi’s highways.
Creators: name: Entsminger, Edward D.
Publisher: name: figshare
Year: 2017
Subjects: subject: Botany
subject: 60299 Ecology not elsewhere classified
subject: FOS: Biological sciences

description: Reference S9. Humber J, Entsminger ED. 2011. Promoting native plant life along Mississippi’s highways. The Mississippi Department of Transportation Magazine Connection, pg. 9. Jackson, Mississippi: Mississippi Department of Transportation. Found at http://dx.doi.org/10.5061/dryad.960dh; also available at https://www.researchgate.net/profile/Edward_Entsminger/publication/285235886_Promoting_Native_Plant_Life_along_Mississippi's_Highways/links/565cc65a08ae4988a7bb838a.pdf?origin=publication_detail&ev=pub_int_prw_xdl&msrp=PIUn0gHeToDnFkJXIqzBIpTvpeQetR_kj1gs5Atq55HRnXVMxTqNpfSKDexzXZez2vD51rxWrrmroZ7YHbyzFQ.Y1FuQY6Yk0AJcj3E7sOyRislBVtUIUY8hS7-fX0-IXeiXYGYZA5og09vXAiAKLiTJX_Qm32iM3VrW-sOfhvc1g.vvpKeL7EUOrCcZxBiIX-MVxFQcYWi2lWkg0_gbPuu3qPfd-_smddUaGUI7uCWjkdH1t2RWRbWWkMrywWWFPzdQ (3.61 MB PDF).
title: Atlas des DOM. - La Réunion - Planche 3 : Géologie : notice, page 2 "I. Structure de La Réunion"
Creators: name: Defos du Rau, Jean
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2017
Subjects: montagne
géologie
basalte
géochronologie
sol volcanique

description: Présente la construction géologique de La Réunion ainsi que les éléments constitutifs des massifs des Pitons des Neiges et de la Fournaise. Une carte schématique présente les éruptions du volcan de la Fournaise de 1961 à 1972.
description: Relation: http://www.nakala.fr/data/11280/8c29519c
description: Coverage: La Réunion
description: Coverage: Piton de la Fournaise
description: Coverage: Piton des Neiges
description: Temporal: start=1961; end=1975;
Passiflora edulis Sims
Creators: name: Zhou, Ya-Dong
name: Mwachala, Geoffrey
name: Hu, Guang-Wan
name: Wang, Qing-Feng
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Malpighiales
Passifloraceae
Passiflora
Passiflora edulis

description: * Passiflora edulis Sims  —
Habit: Climber.
Habitat: LMWF. Distribution: IV.
 Voucher: Mount Kenya Forest Reserve, 2 Nov. 1968, Kimani 125 (EA).
Reference: De Wilde (1975).
description: Published as part of Zhou, Ya-Dong, Mwachala, Geoffrey, Hu, Guang-Wan & Wang, Qing-Feng, 2022, Annotated checklist of the vascular plants of Mount Kenya, East Africa, pp. 1-108 in Phytotaxa 546 (1) on page 55, DOI: 10.11646/phytotaxa.546.1.1, http://zenodo.org/record/6550464
Duality and the Equivalence Principle of Quantum Mechanics
Creators: name: Isidro, J. M.
Publisher: name: arXiv
Year: 2000
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: Following a suggestion by Vafa, we present a quantum-mechanical model for S-duality symmetries observed in the quantum theories of fields, strings and branes. Our formalism may be understood as the topological limit of Berezin's metric quantisation of the upper half-plane H, in that the metric dependence has been removed. Being metric-free, our prescription makes no use of global quantum numbers. Quantum numbers arise only locally, after the choice of a local vacuum to expand around. Our approach may be regarded as a manifestly non perturbative formulation of quantum mechanics, in that we take no classical phase space and no Poisson brackets as a starting point. The reparametrisation invariance of H under SL(2,R) induces a natural SL(2,R) action on the quantum mechanical operators that implements S-duality. We also link our approach with the equivalence principle of quantum mechanics recently formulated by Faraggi and Matone.
description: 14 pages, JHEP style
Reference S10. Mitigation measures for highway-caused impacts to birds.
Creators: name: Entsminger, Edward D.
Publisher: name: figshare
Year: 2017
Subjects: subject: Botany
subject: 60299 Ecology not elsewhere classified
subject: FOS: Biological sciences

description: Reference S10. Jacobson SL. 2005. Mitigation measures for highway-caused impacts to birds. Pages 1043–1050 in Ralph CJ, Rich TD, editors. Bird conservation implementation and integration in the Americas: proceedings of the third international partners in flight conference, 20–24 March 2002. Albany, California: Department of Agriculture, U. S. Forest Service, Pacific Southwest Research Station. U.S. Forest Service General Technical Report PSW-GTR-191 Volume 2. Found at http://dx.doi.org/10.5061/dryad.960dh; also available at https://www.fws.gov/migratorybirds/pdf/management/jacobsen2005highwaymeasures.pdf (183 KB PDF).
MOESM6 of AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number
Creators: name: Newman, Aaron
name: Cooper, James
Publisher: name: figshare
Year: 2010
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Computational Biology

description: Additional file 6: Figure S2. Up-regulation of PluriPlus interaction network in pluripotent stem cells. (PDF 3 MB)
Reference S11. Best practices handbook on roadside vegetation management.
Creators: name: Entsminger, Edward D.
Publisher: name: figshare
Year: 2017
Subjects: subject: Botany
subject: 60299 Ecology not elsewhere classified
subject: FOS: Biological sciences

description: Reference S11. Johnson AM. 2000. Best practices handbook on roadside vegetation management. University of Minnesota, Minneapolis: Minnesota Technology Transfer. Minnesota Technology Transfer (T2)/LTAP Program, Center for Transportation Studies Report Number: Mn/DOT 2000-19. Found at http://dx.doi.org/10.5061/dryad.960dh; also available at http://www.lrrb.org/PDF/200019.pdf (2.46 MB PDF).
Reputation and Reality in America's Model Town: Remembering Racial Integration in Teaneck, New Jersey, 1949-1968
Creators: Mark, Rachel
Publisher: name: Columbia University
Year: 2011
Subjects: History
African Americans

description: In 1968, Reginald Damerell published Triumph in a White Suburb, his chronicle of
Teaneck, New Jersey‟s school integration. In this account based on almost two hundred
interviews, Teaneck resident Damerell told of the town‟s neighborhood integration efforts dating
back to the early 1950s, culminating in the triumph of 1965, when Teaneck residents became the
first in the nation to vote to integrate their school system. Teaneck, at that point a town of about
forty thousand, became known nationally as a champion of integration. However, a second and
contrasting Teaneck narrative exists as old as this first one. In the second narrative, Teaneck was
like any other town. It rejected Jews and African Americans who first moved in. Some liberal
residents banded together in an attempt to advocate for open housing, but ultimately failed. The
school system was integrated, but it was first instated by the Board of Education, against the will
of the majority. The town eventually voted for it, but it was only due to a strong, concerted effort
by the integrationists. Ultimately, the promise of a truly integrated society fell short: the same
year that Triumph in a White Suburb was published, a task force was appointed to investigate
racial disturbances at the central high school. Yet the narrative of triumph has persisted and
become dominant. This thesis will investigate how Teaneck came to symbolize racial progress
even though it was apparent from the very moment of triumph that it was just that – a moment.
Bulk and Boundary S Matrices for the SU(N) Chain
Creators: name: Doikou, Anastasia
name: Nepomechie, Rafael I.
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: FOS: Physical sciences

description: We consider both closed and open integrable antiferromagnetic chains constructed with the SU(N)-invariant R matrix. For the closed chain, we extend the analyses of Sutherland and Kulish-Reshetikhin by considering also complex ``string'' solutions of the Bethe Ansatz equations. Such solutions are essential to describe general multiparticle excited states. We also explicitly determine the SU(N) quantum numbers of the states. In particular, the model has particle-like excitations in the fundamental representations [k] of SU(N), with k = 1, ..., N-1. We directly compute the complete two-particle S matrices for the cases [1] X [1] and [1] X [N-1]. For the open chain with diagonal boundary fields, we show that the transfer matrix has the symmetry SU(l) X SU(N-l) X U(1), as well as a new ``duality'' symmetry which interchanges l and N - l. With the help of these symmetries, we compute by means of the Bethe Ansatz for particles of types [1] and [N-1] the corresponding boundary S matrices.
description: 28 pages, LaTeX, 5 LaTeX figures
Croton sylvaticus Hochst.
Creators: name: Zhou, Ya-Dong
name: Mwachala, Geoffrey
name: Hu, Guang-Wan
name: Wang, Qing-Feng
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Malpighiales
Euphorbiaceae
Croton
Croton sylvaticus

description: Croton sylvaticus Hochst.  —
Habit: Tree, small tree or shrub.
Habitat: LMWF; up to 2 000 m. Distribution: II.
 Voucher: Lake Nkunga, Alt. 1 900 m, 19 Jan. 2001, Luke et al. 7226 (EA).
Reference: Bussmann (1994).
description: Published as part of Zhou, Ya-Dong, Mwachala, Geoffrey, Hu, Guang-Wan & Wang, Qing-Feng, 2022, Annotated checklist of the vascular plants of Mount Kenya, East Africa, pp. 1-108 in Phytotaxa 546 (1) on page 56, DOI: 10.11646/phytotaxa.546.1.1, http://zenodo.org/record/6550464
Reference S12. Successional establishment, mowing response, and erosion control characteristics of roadside vegetation in Texas.
Creators: name: Entsminger, Edward D.
Publisher: name: figshare
Year: 2017
Subjects: subject: Botany
subject: 60299 Ecology not elsewhere classified
subject: FOS: Biological sciences

description: Reference S12. Li MH, Schutt JR, McFalls J, Bardenhagen EK, Yong Sung C, Wheelock L. 2008. Successional establishment, mowing response, and erosion control characteristics of roadside vegetation in Texas. Austin, Texas: Texas Department of Transportation Research and Technology Implementation Office. Technical Report: FHWA/TX-08/0-4949-1. Found at http://dx.doi.org/10.5061/dryad.960dh; also available at http://d2dtl5nnlpfr0r.cloudfront.net/tti.tamu.edu/documents/0-4949-1.pdf (1.54 MB PDF).
Free-Space Wide-Aperture Sheet-Isolator Based on a Multilayered Resonant Cavity
Creators: name: Kononchuk, R.
name: Pfeiffer, C.
name: Anisimov, I.
name: Limberopoulos, N. I.
name: Vitebskiy, I.
name: Chabanov, A. A.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Applied Physics (physics.app-ph)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We introduce the first conceptual design of a free-space thin-sheet isolator with unlimited aperture and the possibility of a broadband omnidirectional rejection of the backward propagating light. The proposed design involves a multilayered resonant cavity incorporating subwavelength magnetic layers, dichroic nanolayers, and an optional metallic nanolayer. The cavity resonance enhances the Faraday rotation produced by the subwavelength magnetic layers, while providing nearly total absorption of the backward-propagating light by the dichroic nanolayers. The latter is a necessary and the most challenging condition for a thin-sheet isolator with unlimited aperture to function. The (optional) metallic nanolayer provides rejection of the obliquely incident light, which otherwise would be partially transmitted in either direction. Our numerical simulations and quasi-optical measurements at millimeter-wave frequencies illustrate how the key elements of the layered-sheet isolator work. Our approach can be scaled down to long- and mid-infrared wavelengths.
description: in the PRApplied format, 6 pages, 8 figures
Copper Mountain Mine Wolfe Creek fish habitat offsetting plan effectiveness monitoring
Creators: name: Poulton, T. L. S.
name: Hughes, C.
Publisher: name: The University of British Columbia
Year: 2022

description: Wolfe Creek is a small tributary of the Similkameen River near Princeton British Columbian. Prior to 2020, Wolfe Creek conveyed flows adjacent the toe of the East Dam of the Copper Mountain Mine (CMM) Tailings Management Facility. To protect the toe of the East Dam and prevent encroachment into Wolfe Creek, CMM realigned 2.9 km of Wolfe Creek, of which 915 m was fish-bearing. To offset residual "serious harm to fish" as defined under the Fisheries Act at the time of project planning and in support of an application for Authorization pursuant to Paragraph 35(2) of the Fisheries Act, Hatfield Consultants and Copper Mountain Mine developed the Wolfe Creek Fish Habitat Offsetting Plan. The offsetting plan was designed to provide higher quality fish habitat than what was impacted by the realignment project and to restore downstream habitat historically altered by agriculture activities. Fish habitat offsetting features include large overwintering and summer rearing ponds, new meandering channels comprised of riffle-pool-run morphology, large woody debris, boulder clusters, and riparian vegetation. Construction of these offsetting features commenced in October 2020 and were commissioned in December 2020. A nine-year effectiveness monitoring program was initiated in 2021 to determine if the habitat offsetting features are functioning as intended, track the progress of habitat offsetting features towards meeting or exceeding the offsetting equivalency budget established in the offsetting plan, and demonstrate appropriate compensation has been provided to offset project-related losses. Results of year one (2021) effectiveness monitoring indicate that the offsetting features are providing suitable spawning, rearing, and overwintering habitat for target fish populations, and habitat offsetting equivalency targets have been achieved.
Reference S13. Policy for roadside vegetation management.
Creators: name: Entsminger, Edward D.
Publisher: name: figshare
Year: 2017
Subjects: subject: Botany
subject: 60299 Ecology not elsewhere classified
subject: FOS: Biological sciences

description: Reference S13. Louisiana Department of Transportation and Development. 2000. Policy for roadside vegetation management. Louisiana Register: 1–60. Found at http://dx.doi.org/10.5061/dryad.960dh; also available at http://wwwsp.dotd.la.gov/Inside_LaDOTD/Divisions/Engineering/Misc Documents/Policy For Roadside Vegetation Management.pdf (1.32 MB PDF).
One-electron linear systems in a strong magnetic field
Creators: name: V., J. C. Lopez
name: Turbiner, A.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Astrophysics (astro-ph)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: Mathematical Physics (math-ph)
subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: Using a variational method we study a sequence of the one-electron atomic and molecular-type systems H, H_2^+, H_3^(2+) and H_4^(3+) in the presence of a homogeneous magnetic field ranging B = 0 - 4.414x10^{13} G. These systems are taken as a linear configuration aligned with the magnetic lines. For H_3^(2+) the potential energy surface has a minimum for B\sim 10^{11} G which deepens with growth of the magnetic field strength (JETP Lett. 69, 844 (1999)); for B \gtrsim 10^{12} G the minimum of the potential energy surface becomes sufficiently deep to have longitudinal vibrational state. We demonstrate that for the (ppppe) system the potential energy surface at B \gtrsim 4.414x10^{13} G develops a minimum, indicating the possible existence of exotic molecular ion H_4^(3+). We find that for almost all accessible magnetic fields H_2^+ is the most bound one-electron linear system while for magnetic fields B \gtrsim 10^{13} G the molecular ion H_3^(2+) becomes the most bound.
description: RevTeX, 11pp, 3 figs and 1 table; submitted to Phys.Rev.A. Typos corrected, some stylistic changes made, clarifying sentences about Figs. 2,3 as well as extra references added
Requirement and regulation of actin polymerization during endocytosis
Creators: Basu, Roshni
Publisher: name: Columbia University
Year: 2011
Subjects: subject: Cytology
subject: Biology
subject: Microbiology
subject: FOS: Biological sciences

description: Endocytosis, or cell 'eating,' is a process used by cells for functions such as ingesting foreign particles during an immune response, sensing environmental cues during development and fine-tuning communication between synapses during a neuronal transmission. Endocytosis also allows individual cells to internalize their own protein and membrane components from the plasma membrane to maintain polarized growth, recycle membrane-bound receptors and perform quality control within the cell by guiding damaged proteins for degradation. The unicellular model organism, fission yeast, is an excellent system to study conserved aspects of endocytosis. Clathrin-mediated endocytosis, the focus of this thesis, involves the formation of a clathrin coat and polymerization of a branched actin network around the endocytic site, which facilitates internalization of the plasma membrane. The assembly of over 50 proteins during this process occurs under a minute with very high precision. However not much is known about the precise temporal regulation of these steps. In this thesis I report the discovery of a switch that regulates the timing of actin polymerization during endocytosis. I characterize a novel component of the endocytic machinery, dip1p, which is involved in regulating this switch. I highlight additional modes of activation of actin polymerization and endocytosis in dip1 mutants. In my assessment for the requirement for actin polymerization during endocytosis, I discover that one role of actin polymerization during the initial invagination step of endocytosis in yeast is to overcome the tremendous turgor pressure within the cell. I show that in certain mutants defective in actin polymerization, defects in endocytosis can be rescued by reducing turgor pressure. I also show that the cell wall does not contribute to forces required for endocytic internalization. Finally, I report the fortuitous sighting of filamentous actin in the nuclei of a certain mutant fission yeast cell, namely dip1for3 double mutant cells. An excess of nuclear actin leads to defects in nuclear architecture and appears to cause defects in chromosome segregation.  This finding establishes a model system to gain further insight into functions of nuclear actin. In summary, this thesis provides insights into the requirement and novel mechanisms of regulation of Arp2/3-mediated actin polymerization and furthers the understanding of mechanisms of endocytosis. These discoveries can form the basis for further studies in other conserved processes, such as cell migration, microbial pathogenesis and cell division that require polymerization of actin filaments.
Casearia battiscombei R. E. Fr.
Creators: name: Zhou, Ya-Dong
name: Mwachala, Geoffrey
name: Hu, Guang-Wan
name: Wang, Qing-Feng
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Malpighiales
Salicaceae
Casearia
Casearia battiscombei

description: Casearia battiscombei R.E.Fr.  —
Habit: Small tree.
Habitat: LMWF; up to 2 500 m. Distribution: II.
 Voucher: Chogoria Track, Alt. 2000 m, 26 Oct. 1987, Luke 706 (EA).
References: Fries & Fries (1925), Sleumer (1975), Bussmann (1993, 1994), Bussmann & Beck (1995a, 1998).
description: Published as part of Zhou, Ya-Dong, Mwachala, Geoffrey, Hu, Guang-Wan & Wang, Qing-Feng, 2022, Annotated checklist of the vascular plants of Mount Kenya, East Africa, pp. 1-108 in Phytotaxa 546 (1) on page 56, DOI: 10.11646/phytotaxa.546.1.1, http://zenodo.org/record/6550464
Reference S14. A management guide for invasive plants in southern forests.
Creators: name: Entsminger, Edward D.
Publisher: name: figshare
Year: 2017
Subjects: subject: Botany
subject: 60299 Ecology not elsewhere classified
subject: FOS: Biological sciences

description: Reference S14. Miller JH, Manning ST, Enloe SF. 2015. A management guide for invasive plants in southern forests. Asheville, North Carolina: U.S. Department of Agriculture Forest Service, Southern Research Station. U.S. Forest Service General Technical Report GTR–SRS–131. Found at ISBN: 9780160936326 and http://dx.doi.org/10.5061/dryad.960dh; also available at http://www.srs.fs.fed.us/pubs/gtr/gtr_srs131.pdf (5.23 MB PDF).
Euphorbia depauperata A. Rich.
Creators: name: Zhou, Ya-Dong
name: Mwachala, Geoffrey
name: Hu, Guang-Wan
name: Wang, Qing-Feng
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Malpighiales
Euphorbiaceae
Euphorbia
Euphorbia depauperata

description: Euphorbia depauperata Hochst. ex A.Rich.  —
Habit: Herb.
Habitat: LMDF; up to 2 700 m. Distribution: II.
Voucher: N/A.
References: Fries & Fries (1930b), Bussmann (1993, 1994), Agnew (2013).
description: Published as part of Zhou, Ya-Dong, Mwachala, Geoffrey, Hu, Guang-Wan & Wang, Qing-Feng, 2022, Annotated checklist of the vascular plants of Mount Kenya, East Africa, pp. 1-108 in Phytotaxa 546 (1) on page 57, DOI: 10.11646/phytotaxa.546.1.1, http://zenodo.org/record/6550464
Reference S15. A landowner’s guide to prairie management in Minnesota.
Creators: name: Entsminger, Edward D.
Publisher: name: figshare
Year: 2017
Subjects: subject: Botany
subject: 60299 Ecology not elsewhere classified
subject: FOS: Biological sciences

description: Reference S15. Svedarsky WD, Kuchenreuther MA, Cuomo GJ, Buesseler P, Moechnig H, Singh A. 2002. A landowner’s guide to prairie management in Minnesota. Crookston, Minnesota: University of Minnesota, Northwest Research and Outreach Center, Natural Resources Conservation Service, and the Minnesota Department of Natural Resources. Found at http://dx.doi.org/10.5061/dryad.960dh; also available at https://www.crk.umn.edu/sites/crk.umn.edu/files/landowners-guide-to-prairie-management-in-minnesota-svedarsky.pdf (2.49 MB PDF).
Dynamical Decoupling of Quantum Two-Level Systems by Coherent Multiple Landau-Zener Transitions
Creators: name: Matityahu, Shlomi
name: Schmidt, Hartmut
name: Bilmes, Alexander
name: Shnirman, Alexander
name: Weiss, Georg
name: Ustinov, Alexey V.
name: Schechter, Moshe
name: Lisenfeld, Jürgen
Publisher: name: arXiv
Year: 2019
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Increasing and stabilizing the coherence of superconducting quantum circuits and resonators is of utmost importance for various technologies ranging from quantum information processors to highly sensitive detectors of low-temperature radiation in astrophysics. A major source of noise in such devices is a bath of quantum two-level systems (TLSs) with broad distribution of energies, existing in disordered dielectrics and on surfaces. Here we study the dielectric loss of superconducting resonators in the presence of a periodic electric bias field, which sweeps near-resonant TLSs in and out of resonance with the resonator, resulting in a periodic pattern of Landau-Zener transitions. We show that at high sweep rates compared to the TLS relaxation rate, the coherent evolution of the TLS over multiple transitions yields a significant reduction in the dielectric loss relative to the intrinsic value. This behavior is observed both in the classical high-power regime and in the quantum single-photon regime, possibly suggesting a viable technique to dynamically decouple TLSs from a qubit.
description: Revised version
Phase Coherent Precessional Magnetization Reversal in Micro-scopic Spin Valve Elements
Creators: name: Schumacher, H. W.
name: Chappert, C.
name: Crozat, P.
name: Sousa, R. C.
name: Freitas, P. P.
name: Miltat, J.
name: Fassbender, J.
name: Hillebrands, B.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: We study the precessional switching of the magnetization in microscopic spin valve cells induced by ultra short in-plane hard axis magnetic field pulses. Stable and highly efficient switching is monitored following pulses as short as 140 ps with energies down to 15 pJ. Multiple application of identical pulses reversibly toggles the cell's magnetization be-tween the two easy directions. Variations of pulse duration and amplitude reveal alter-nating regimes of switching and non-switching corresponding to transitions from in-phase to out-of-phase excitations of the magnetic precession by the field pulse. In the low field limit damping becomes predominant and a relaxational reversal is found allowing switching by hard axis fields below the in-plane anisotropy field threshold.
description: 17 pages, 4 figures
Reference S18. Assessment of alternatives in vegetation management at the edge of pavement.
Creators: name: Entsminger, Edward D.
Publisher: name: figshare
Year: 2017
Subjects: subject: Botany
subject: 60299 Ecology not elsewhere classified
subject: FOS: Biological sciences

description: Reference S18. Willard R, Morin J, Tang O. 2010. Assessment of alternatives in vegetation management at the edge of pavement. Olympia, Washington: Washington State Department of Transportation. Washington State Department of Transportation, Pavement Edge Vegetation Management, Final Report: WA-RD 736.1. Found at http://dx.doi.org/10.5061/dryad.960dh; also available at http://www.wsdot.wa.gov/research/reports/fullreports/736.1.pdf (5.15 MB PDF).
Research Proposal: The Effect of In Utero Exposure to Electromagnetic Radiation from Laptop Computers
Creators: Khan, Sarah H.
Publisher: name: Columbia University
Year: 2010
Subjects: subject: Psychology
subject: FOS: Psychology

description: With the increase of popularity and common use of devices such as laptop computers and
cell phones, the safety of radiation emitted by these devices has become an issue of increasing
concern. It is surprising therefore that there is not enough research to make us aware of all its
harmful effects. Health issues are increasing in subsequent generations and if some of these are
linked to radiation exposure, we should know so that we can avoid them.
Research collaboration matters: a mixed methods study of HIV service providers' involvement in research and their use of evidence based practices
Creators: Spector, Anya Yankovich
Publisher: name: Columbia University
Year: 2012
Subjects: Social service

description: This study examined the influence of: 1) research experience; 2) knowledge and education; and 3) agency characteristics on providers' willingness to be involved in research and DEBI use.  Grounded in an integrated theoretical framework of organizational and behavioral theories, this study used concurrent mixed methods for a secondary analysis of 20 in-depth interviews and cross-sectional surveys from 141 providers in New York City.  Content analysis identified specific research tasks/procedures employed by providers involved in collaboration with researchers, according to whether they do or do not resemble service provision ("proximal") or ("distal"). Multivariate linear regression was applied to determine the influence of these tasks/procedures on willingness to be involved in research and use of DEBIs.  The study showed that having been involved in proximal tasks was positively associated with providers' willingness to collaborate with researchers and with their use of DEBIs. Having been involved in distal tasks was negatively associated with providers' use of DEBIs.  Providers' level of education, attitudes toward research, and agency capacity were positively associated with willingness to be involved in research.  Providers' level of education, knowledge of DEBIs, and agency capacity were positively associated with use of DEBIs.  This study demonstrates how proximal tasks/procedures and other modifiable factors (e.g., education, agency capacity, knowledge) may influence providers to use DEBIs. The findings may help inform: 1) best practices for research collaboration; 2) funding to involve providers in research; and 3) training for researchers and providers to collaborate.
Reference S19. Evaluating alternative methods for vegetation control and maintenance along roadsides: study II.
Creators: name: Entsminger, Edward D.
Publisher: name: figshare
Year: 2017
Subjects: subject: Botany
subject: 60299 Ecology not elsewhere classified
subject: FOS: Biological sciences

description: Reference S19. Young S, Claassen V. 2007. Evaluating alternative methods for vegetation control and maintenance along roadsides: study II. Sacramento, California: California Department of Transportation/University of California Davis. Research Technical Agreement #65A0137. Found at http://dx.doi.org/10.5061/dryad.960dh; also available at http://www.dot.ca.gov/hq/LandArch/16_la_design/research/docs/Veg_Conversion_Final_Report.pdf (3.07 MB PDF).
Additional file 1 of Effect of commercial wearables and digital behaviour change resources on the physical activity of adolescents attending schools in socio-economically disadvantaged areas: the RAW-PA cluster-randomised controlled trial
Creators: name: Ridgers, Nicola D.
name: Timperio, Anna
name: Ball, Kylie
name: Lai, Samuel K.
name: Brown, Helen
name: Macfarlane, Susie
name: Salmon, Jo
Publisher: name: figshare
Year: 2021
Subjects: Medicine
Science Policy
Biological Sciences not elsewhere classified

description: Additional file 1. RAW-PA consort statement.
MOESM3 of AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number
Creators: name: Newman, Aaron
name: Cooper, James
Publisher: name: figshare
Year: 2010
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: 60506 Virology

description: Additional file 3: Analysis of PluriUp and PluriPlus biological significance. Table S3, PluriUp gene ontology functional enrichment; Table S4, Gene Set Enrichment Analysis of PluriUp genes; Table S5, Summary of microarray metadataset assembled from 5 iPSC reprogramming experiments; Table S6, PluriUp and PluriPlus genes significantly overlap with ESC-associated genes. (PDF 99 KB)
Reference S2. Wildflowers for Indiana highways.
Creators: name: Entsminger, Edward D.
Publisher: name: figshare
Year: 2017
Subjects: subject: Botany
subject: 60299 Ecology not elsewhere classified
subject: FOS: Biological sciences

description: Reference S2. Dana MN, Kemery RD, Boszor BS. 1996. Wildflowers for Indiana highways. West Lafayette, Indiana: Joint Transportation Research Program, Paper 227. Report No. FHWA/IN/JHRP-96/1. Purdue Libraries, Purdue e-Pubs Civil Engineering, 1–162. Found at DOI: 10.5703/1288284313350; also available at http://docs.lib.purdue.edu/cgi/viewcontent.cgi?article=1698&context=jtrp (5.78 MB PDF).
Resident Satisfaction of Affordable Housing: The Case of Qingdao, China
Creators: Bi, Weijian
Publisher: name: Columbia University
Year: 2018
Subjects: City planning
Public housing--Resident satisfaction
Housing--Resident satisfaction

description: Since the housing reform in 1998, efforts have been made to develop affordable housing and an average of seven million units of affordable housing have been built each year in urban Chinese cities (National Bureau of Statistics, 2016). As a response to the national policy, the Qingdao Municipal Government has listed the construction of affordable housing as one of the priority in planning guidelines for 12 consecutive years. While living conditions of low-and middle-income families have been improved, there is little attention towards resident satisfaction. The aim of this thesis is to assess the relationship of demographics, communal, and social factors to resident satisfaction of affordable housing. This study focuses not only on investigating the degree of satisfaction but also on their social needs and emotional responses as important measures of resident satisfaction. A stratified systematic sample were collected in Qingdao during survey with 84 residents in “Economic and Comfortable Housing (经济适用房),” “Price Limited Housing（限价房）,” and “Low Rent Housing（廉租房）.” Descriptive statistics and Ordinary Least Squares (OLS) Regression analysis was used to investigate the direction and magnitude of the effects of influencing factors to resident satisfaction and examine if the relationship between them varies according to affordable housing types. It is found that the overall level of satisfaction of affordable housing in Qingdao is moderate, and especially the level of satisfaction with housing quality and built environment of the community is poor. Demographic features such as gender, household income, payment method for housing reflected significantly positive impacts on resident satisfaction. Moreover, affordable housing types indeed generates differentiation towards residents’ feelings and perceptions.
Rationality, quasirationality and finite W-algebras
Creators: name: Gaberdiel, Matthias R.
name: Neitzke, Andrew
Publisher: name: arXiv
Year: 2000
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Quantum Algebra (math.QA)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: Some of the consequences that follow from the C_2 condition of Zhu are analysed. In particular it is shown that every conformal field theory satisfying the C_2 condition has only finitely many n-point functions, and this result is used to prove a version of a conjecture of Nahm, namely that every representation of such a conformal field theory is quasirational. We also show that every such vertex operator algebra is a finite W-algebra, and we give a direct proof of the convergence of its characters as well as the finiteness of the fusion rules.
description: 25 pages, AMSLaTeX; added references and clarified the relation of our results to previous work of Li et al
Additional file 1 of In vivo genome editing in mouse restores dystrophin expression in Duchenne muscular dystrophy patient muscle fibers
Creators: name: Chen, Menglong
name: Shi, Hui
name: Gou, Shixue
name: Wang, Xiaomin
name: Li, Lei
name: Jin, Qin
name: Wu, Han
name: Zhang, Huili
name: Li, Yaqin
name: Wang, Liang
name: Li, Huan
name: Lin, Jinfu
name: Guo, Wenjing
name: Jiang, Zhiwu
name: Yang, Xiaoyu
name: Xu, Anding
name: Zhu, Yuling
name: Zhang, Cheng
name: Lai, Liangxue
name: Li, Xiaoping
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 1: Supplementary Figures S1-S27.
Reference S16. Integrated roadside vegetation management: a synthesis of highway practice.
Creators: name: Entsminger, Edward D.
Publisher: name: figshare
Year: 2017
Subjects: subject: Botany
subject: 60299 Ecology not elsewhere classified
subject: FOS: Biological sciences

description: Reference S16. Transportation Research Board. 2005. Integrated roadside vegetation management: a synthesis of highway practice. Washington, D.C.: National Cooperative Highway Research Program. Found at DOI: 10.17226/23323; also available at http://www.trb.org/Publications/Blurbs/155791.aspx (1.41 MB PDF).
Reference S17. Assessing and managing the ecological impacts of paved roads.
Creators: name: Entsminger, Edward D.
Publisher: name: figshare
Year: 2017
Subjects: subject: Botany
subject: 60299 Ecology not elsewhere classified
subject: FOS: Biological sciences

description: Reference S17. Transportation Research Board, National Research Council. 2005. Assessing and managing the ecological impacts of paved roads. Washington, D.C.: The National Academies Press. Found at https://doi.org/10.17226/11535; also available at https://www.nap.edu/catalog/11535/assessing-and-managing-the-ecological-impacts-of-paved-roads (2.43 MB PDF).
Residential Development and Its Impact on School Access in New York City
Creators: Li, Patrick
Publisher: name: Columbia University
Year: 2017
Subjects: Community development, Urban
City planning
Housing development
School choice

description: Residential development in New York City has been increasing since 2010. This increase is due to both private and public players in the built urban environment, as developers try to push the limits of the luxury market, while the city has plans to increase and preserve the stock of affordable housing throughout the city. Such increases in residential development, however, have negative impacts on public amenities by adding pressure in the form of overcrowding, noise pollution, or traffic. This study seeks to explore such consequences of residential development, specifically its impact on access to schools in New York City. By looking at access as spatial accessibility, consulting publicly available data, and proposing a methodology adapted from others established in academic literature, this study reaffirms the notion that residential development has a negative impact on access to schools. The results of this study also shed light on the appropriateness of research methodologies to understand urban phenomena, as not a single method is deemed to be the best in revealing a relationship between residential development and spatial accessibility to schools. The answers found, as well as the process by which the thesis question is explored are helpful for urban planners as we seek to improve how we can better understand our built environments in order to create policies that improve people’s quality of life at various scales and contexts.
Rawsonia lucida Harv.
Creators: name: Zhou, Ya-Dong
name: Mwachala, Geoffrey
name: Hu, Guang-Wan
name: Wang, Qing-Feng
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Malpighiales
Achariaceae
Rawsonia
Rawsonia lucida

description: Rawsonia lucida Harv.  —
Habit: Shrub.
Habitat: LMWF, LMDF; up to 1 900 m. Distribution: II.
 Voucher: Lower Imenti Forest, Alt. 1 350 m, 14 Jul. 1965, Ruara 5 (EA).
Reference: Bussmann (2006).
description: Published as part of Zhou, Ya-Dong, Mwachala, Geoffrey, Hu, Guang-Wan & Wang, Qing-Feng, 2022, Annotated checklist of the vascular plants of Mount Kenya, East Africa, pp. 1-108 in Phytotaxa 546 (1) on page 55, DOI: 10.11646/phytotaxa.546.1.1, http://zenodo.org/record/6550464
Additional file 1 of The optimal time of starting adjuvant chemotherapy after curative surgery in patients with colorectal cancer
Creators: name: Yang, Yuchong
name: Lu, Yao
name: Tan, Hui
name: Bai, Ming
name: Wang, Xia
name: Ge, Shaohua
name: Ning, Tao
name: Zhang, Le
name: Duan, Jingjing
name: Sun, Yansha
name: Liu, Rui
name: Li, Hongli
name: Ba, Yi
name: Deng, Ting
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 1: Figure S1. Test result for publication bias A. Begg’s test (P = 0.13); B. Egger’s test (P = 0.36); C. Sensitivity analysis of the hazard ratio of overall survival. Table S1. The Newcastle-Ottawa scale quality of included studies. Table S2. The summary results about 5-year overall survival in patients receiving AC in < 8 weeks and that in patients who started the AC in > 8 weeks. Table S3. The summary results about 5-year relapse-free survival in patients receiving AC in < 8 weeks and that in patients who started the AC in > 8 weeks. Table S4. The summary results about 5-year overall survival in patients receiving AC in ≤ 4 weeks and that in patients who started the AC in 5-8 weeks.