Cothurnia salina Zhuang, Clamp, Yi &amp; Ji, 2016, n. sp.
Creators: name: Zhuang, Yuan
name: Clamp, John C.
name: Yi, Zhenzhen
name: Ji, Daode
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Protozoa
Ciliophora
Oligohymenophorea
Peritrichida
Vaginicolidae
Cothurnia
Cothurnia salina

description: Morphology of <i>Cothurnia salina</i> n. sp. (Figs. 1, 2; Table 1) <b>Diagnosis.</b> Body elongated columnar, <i>in vivo</i> 80–98 × 12–19 µm; lorica barrel-shaped, with aboral part heavily thickened; stalk extremely short, with approximately ½ of its length within the lorica; macronucleus wormlike, longitudinally oriented; single contractile vacuole ventrally located; pellicle conspicuously striated, with 62–73 transverse and parallel striations between peristome and aboral trochal band, 32–38 between aboral trochal band and scopula; infundibular polykinety 3 (P3) consisting of two rows of kinetosomes, which are equal in length, parallel to each other and terminate adstomally between P1 and P2. <b>Type location.</b> Muping Salt Factory, Yantai, China (37°25'33.80"N, 121°45'14.20"E). <b>Type material.</b> A slide (registration number 11102201 –01) containing the holotype specimen (protargol preparation, marked by ink circle) and a paratype slide with protargol-stained specimens (registration number 11102201 –02) have been deposited in the Laboratory of Protozoology, Ocean University of China. <b>Etymology.</b> The specific epithet <i>salina</i> refers to the special hypersaline habitat of the new species. <b>Description.</b> Solitary, with slender, cylindroid cell body measuring 80–98 × 12–19 µm (Fig. 1 A, 2A, D, E); body widest at the peristomial lip and not constricted below it (Fig. 1 A, 2A, E). Peristomial lip lacks medial infolding and measures 21–27 µm in diameter. Pellicular striae visible above ×400 magnification (Fig. 2 E), with 62–73 striations from peristome to aboral trochal band and 32–38 from aboral trochal band to scopula (Table 1). Cytoplasm colorless or slightly grayish, usually containing several food vacuoles (diameter 5–10 µm) located in center of body. Single contractile vacuole located adorally, beneath peristomial lip and near ventral wall of infundibulum (Fig. 1 A, 2D). Macronucleus slender, cylindroid, longitudinally oriented (Fig. 1 A, 2F, G); micronucleus not observed. Lorica colorless, transparent, truncate pyriform, measuring 62–74 × 30–35 µm and aperture diameter of 21–30 µm. Aboral part of lorica thickened; wall 3 µm thick. Stalk 10 µm long, with approximately ½ of length exterior to lorica wall. Oral infraciliature as shown in Fig. 1 E, 2H. Haplokinety and polykinety make approximately one and one-half circuits together around peristome before entering infundibulum. Haplokinety and polykinety parallel to one another on peristome, diverging within infundibulum to lie on opposite walls (Fig. 1 E). Three infundibular polykineties (P1–3), with P1 and P2 consisting of three rows of kinetosomes and P3 of two rows. Adstomal ends of rows in P1 terminate at different levels, with inner row slightly shortened; P2 terminates adstomally above adstomal ends of P1 and P3, with row 3 not merging with P1 abstomally and significantly divergent from other two rows abstomally (Fig. 1 E). Rows of P3 parallel and equal in length, terminating adstomally at point approximately midway between adstomal ends of P2 and P1 (Fig. 1 E). Germinal kinety runs parallel to haplokinety in abstomal half of infundibulum (Fig. 1 E). Aboral trochal band consisting of series of dikinetids encircling cell at point 2/3 of distance from peristome to scopula (Fig. 2 E). <b>Phylogenetic analysis based on SSU rRNA sequences (Fig. 3).</b> The SSU rRNA gene sequence of <i>Cothurnia salina</i> (GenBank accession number KT956998) is 1,629 bp long and has a GC content of 43.09%. The sequence of <i>C</i>. <i>salina</i> differs from that of <i>C. annulata</i> (KU363275) by 38 nucleotides (sequence identity 97.4%); <i>C. sp. 0 924</i> (KU363268) by 69 nucleotides (sequence identity 95.2%). Topologies of BI and ML trees were basically congruent, and thus, only the topology of the BI tree is presented in Fig. 3, with support values from both analyses indicated on branches. In both BI and ML trees, <i>C. salina</i> n. sp. clustered in the family Vaginicolidae as expected. <i>C. salina</i> n. sp. clustered with <i>C. annulata</i> with full support (1.00 BI, 100% ML) and these two species are sisters to the species <i>C. sp. 0 924</i> with moderate support (0.80 BI, 57% ML). All data based on specimens <i>in vivo</i>. Abbreviations: Min, minimum; Max, maximum; Mean, arithmetic mean; SD, standard deviation; CV, coefficient of variation (%); n, number of individuals investigated.
description: Published as part of <i>Zhuang, Yuan, Clamp, John C., Yi, Zhenzhen &amp; Ji, Daode, 2016, A new Peritrich Ciliate from a Hypersaline Habitat in Northern China, pp. 179-186 in Zootaxa 4169 (1)</i> on pages 180-184, DOI: 10.11646/zootaxa.4169.1.10, http://zenodo.org/record/257123