cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Impact of sample size, sojourn time distribution on the performance of multistate semi-Markov model for analyzing disease progression: a simulation study
Creators: name: Wang, Zhen
name: Li, Zhiyao
name: Wang, Wenjuan
name: Li, Boyu
name: Chen, Wen
name: Ling, Li
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified

description: Multistate semi-Markov model (MSSMM) is an alternative to the widely used Multistate Markov Model (MSMM) for analyzing longitudinal failure time data, but there lacks simulation study for its performance. We simulated multistate data and evaluated MSSMM’s performance in various parameter settings. We considered an extended illness-death model with 5 states and 8 transitions. Three kinds of sojourn time distributions and a trivial embedded chain were used for data generation. We used information criteria (IC) to select models and calculated the coverage of model parameter, effect and survival statistics. We also calculated the standard deviation of mean state occupancy probability (MSOPSD) and the standard deviation of restricted expected length of stay (RELOSSD) from the perspective of multistate model. We found that correct identification of model distribution is related to the selected IC; model parameter coverage is related to the true distribution and transition; effect coverage is related to the true distribution; survival statistics coverage is related to the true distribution, transition and covariate; MSOPSD and RELOSSD are both related to the selected information criteria and covariate. These findings provide a basis for the reliability of MSSMM extrapolation and prediction, and inspire future MSSMM research.
Steleops pulcher New
Creators: name: Obando, Ranulfo González
name: Aldrete, Alfonso Neri García
name: Carrejo, Nancy Soraya
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Psocodea
Psocidae
Steleops
Steleops pulcher

description: Steleops pulcher New
S. pulcher New, 1972: 226
This species was described from one female from Mato Grosso, Brazil, and the following Colombian specimens constitute the only other known specimens of this species: COLOMBIA. Valle del Cauca. Tuluá. Botanical Garden Juan María Céspedes (04o 01’ 38.2’’N: 76o 09’ 59.9’’W) 1125 m. 21.viii.2010. R. González, 1 Ƥ. 29.viii.2010. N. Carrejo & R. González, 5 females.
description: Published as part of Obando, Ranulfo González, Aldrete, Alfonso Neri García & Carrejo, Nancy Soraya, 2011, A new species of Steleops Enderlein, and a Colombian record of S. pulcher New (Psocodea: ' Psocoptera': Psocidae), pp. 23-27 in Zootaxa 2735 on page 27, DOI: 10.5281/zenodo.203095
title: Identifying the gene responsible for non-photochemical quenching reversal in Phaeodactylum tricornutum
Creators: name: Ware, Maxwell A.
name: Paton, Andrew J.
name: Bai, Yu
name: Kassaw, Tessema
name: Lohr, Martin
name: Peers, Graham
Publisher: name: Freie Universität Berlin
Year: 2024
Subjects: subject: nonphotochemical quenching
subject: diatom
subject: photosynthesis
subject: diatoxanthin
subject: diadinoxanthin
subject: xanthophyll cycle
classificationCode: 570
subject: Biowissenschaften; Biologie

description: Algae such as diatoms and haptophytes have distinct photosynthetic pigments from plants, including a novel set of carotenoids. This includes a primary xanthophyll cycle comprised of diadinoxanthin and its de-epoxidation product diatoxanthin that enables the switch between light harvesting and non-photochemical quenching (NPQ)-mediated dissipation of light energy. The enzyme responsible for the reversal of this cycle was previously unknown. Here, we identified zeaxanthin epoxidase 3 (ZEP3) from Phaeodactylum tricornutum as the candidate diatoxanthin epoxidase. Knocking out the ZEP3 gene caused a loss of rapidly reversible NPQ following saturating light exposure. This correlated with the maintenance of high concentrations of diatoxanthin during recovery in low light. Xanthophyll cycling and NPQ relaxation were restored via complementation of the wild-type ZEP3 gene. The zep3 knockout strains showed reduced photosynthetic rates at higher light fluxes and reduced specific growth rate in variable light regimes, likely due to the mutant strains becoming locked in a light energy dissipation state. We were able to toggle the level of NPQ capacity in a time and dose dependent manner by placing the ZEP3 gene under the control of a β-estradiol inducible promoter. Identification of this gene provides a deeper understanding of the diversification of photosynthetic control in algae compared to plants and suggests a potential target to improve the productivity of industrial-scale cultures.
Additional file 1: of Bone mineral density in patients with multiple sclerosis, hereditary ataxia or hereditary spastic paraplegia after at least 10Â years of disease - a case control study
Creators: name: Simonsen, Cecilia
name: Celius, Elisabeth
name: Brunborg, Cathrine
name: Tallaksen, Chantal
name: Eriksen, Erik
name: HolmĂ¸Y, Trygve
name: Moen, Stine
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy

description: Supplementary Table 1: an overview of possible bone influential factors in both groups. (DOCX 14Â kb)
Gahrliepia (Gateria) agrariusia Hsu, Hsu and Wen 1965
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Trombiculidae
Gahrliepia
Gahrliepia agrariusia

description: Gahrliepia (Gateria) agrariusia Hsu, Hsu and Wen, 1965:
PAL
Gateria (Gateria) agrariusia, Wen & Gui 2000
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 24, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Additional file 5: of Leptin produced by obese adipose stromal/stem cells enhances proliferation and metastasis of estrogen receptor positive breast cancers
Creators: name: Strong, Amy
name: Ohlstein, Jason
name: Biagas, Brandi
name: Rhodes, Lyndsay
name: Pei, Dorothy
name: H. Tucker
name: Llamas, Claire
name: Bowles, Annie
name: Dutreil, Maria
name: Shijia Zhang
name: Gimble, Jeffrey
name: Burow, Matthew
name: Bunnell, Bruce
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: mRNA expression of T47D cells after exposure to leptin knockdown adipose stromal/stem cells (ASCs). Data are shown as fold change relative to respective breast cancer cell line without previous co-culture with ASCs. *P <0.05; # P <0.01; ÂĽ P <0.001. lep leptin, ctrl control, lnASCs, adipose stromal/stem cells isolated from lean women, obASCs adipose stromal/stem cells isolated from obese women, EMT epithelial-to-mesenchymal transition (PDF 50 kb)
Additional file 3: of Leptin produced by obese adipose stromal/stem cells enhances proliferation and metastasis of estrogen receptor positive breast cancers
Creators: name: Strong, Amy
name: Ohlstein, Jason
name: Biagas, Brandi
name: Rhodes, Lyndsay
name: Pei, Dorothy
name: H. Tucker
name: Llamas, Claire
name: Bowles, Annie
name: Dutreil, Maria
name: Shijia Zhang
name: Gimble, Jeffrey
name: Burow, Matthew
name: Bunnell, Bruce
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: mRNA expression of MCF7 cells after exposure to leptin (lep) knockdown adipose stromal/stem cells (ASCs). Data are shown as fold change relative to the respective breast cancer cell line without previous co-culture with ASCs. *P <0.05; # P <0.01; ÂĽ P <0.001. EMT epithelial-to-mesenchymal transition, lnASCs, adipose stromal/stem cells isolated from lean women, obASCs adipose stromal/stem cells isolated from obese women (PDF 50 kb)
Additional file 6: of Leptin produced by obese adipose stromal/stem cells enhances proliferation and metastasis of estrogen receptor positive breast cancers
Creators: name: Strong, Amy
name: Ohlstein, Jason
name: Biagas, Brandi
name: Rhodes, Lyndsay
name: Pei, Dorothy
name: H. Tucker
name: Llamas, Claire
name: Bowles, Annie
name: Dutreil, Maria
name: Shijia Zhang
name: Gimble, Jeffrey
name: Burow, Matthew
name: Bunnell, Bruce
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Space Science
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: mRNA expression of xenografts formed with MCF7 cells and leptin knockdown adipose stromal/stem cells (ASCs). Data are shown as fold change relative to respective breast cancer cell line without previous co-culture with ASCs. *P <0.05; # P <0.05; ÂĽ P <0.05. lep leptin, ctrl control, lnASCs, adipose stromal/stem cells isolated from lean women, obASCs adipose stromal/stem cells isolated from obese women, EMT epithelial-to-mesenchymal transition (PDF 49 kb)
Porirualia Huys & Mu 2021
Creators: name: Ma, Lin
name: Wu, Yihong
name: Li, Xin Zheng
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Copepoda
Harpacticoida
Parastenheliidae
Porirualia

description: Key to species of the genus Porirualia Huys & Mu, 2021
1. P3 and P4 exp-3 with two inner setae.............................. Porirualia pyriformis (Song, Kim & Chang, 2003)
- P3 and P4 exp-3 with three inner setae.................................................................... 2
2. P 5 female exopod elongated, ratio of length to maximum width 3.83...................... Porirualia ngankeeae sp. nov.
- P 5 female exopod not elongated, ratio of length to maximum width 2.2.................................................................................................... Porirualia megarostrum (Wells, Hicks & Coull, 1982)
description: Published as part of Ma, Lin, Wu, Yihong & Li, Xin Zheng, 2024, A new species of the genus Porirualia Huys & Mu, 2021 (Copepoda, Harpacticoida, Parastenheliidae) from the intertidal zone of Qingdao, China, with a key to species of the genus, pp. 241-252 in Zootaxa 5476 (1) on page 252, DOI: 10.11646/zootaxa.5476.1.21, http://zenodo.org/record/12726987
Let’s face it — children miss valuable ‘shoulder-to-shoulder’ learning moments during remote schooling
Creators: name: KRIEWALDT, JEANA
name: Lee, Shu Jun
Publisher: name: The University of Melbourne
Year: 2024
Subjects: classificationCode: 390307
subject: Teacher education and professional development of educators
classificationCode: 390201
subject: Education policy

description: News article in The Conversation: https://theconversation.com/lets-face-it-children-miss-valuable-shoulder-to-shoulder-learning-moments-during-remote-schooling-165536
Additional file 4: of Leptin produced by obese adipose stromal/stem cells enhances proliferation and metastasis of estrogen receptor positive breast cancers
Creators: name: Strong, Amy
name: Ohlstein, Jason
name: Biagas, Brandi
name: Rhodes, Lyndsay
name: Pei, Dorothy
name: H. Tucker
name: Llamas, Claire
name: Bowles, Annie
name: Dutreil, Maria
name: Shijia Zhang
name: Gimble, Jeffrey
name: Burow, Matthew
name: Bunnell, Bruce
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: mRNA expression of ZR75 cells after exposure to leptin knockdown adipose stromal/stem cells (ASCs). Data are shown as fold change relative to respective breast cancer cell line without previous co-culture with ASCs. *P <0.05; # P <0.01; ÂĽ P <0.001. lep leptin, ctrl control, lnASCs, adipose stromal/stem cells isolated from lean women, obASCs adipose stromal/stem cells isolated from obese women, EMT epithelial-to-mesenchymal transition (PDF 50 kb)
Porirualia Huys & Mu 2021
Creators: name: Ma, Lin
name: Wu, Yihong
name: Li, Xin Zheng
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Copepoda
Harpacticoida
Parastenheliidae
Porirualia

description: Genus Porirualia Huys & Mu, 2021
Type species. Porirualia megarostrum (Wells, Hicks & Coull, 1982). Other species. Porirualia pyriformis (Song, Kim & Chang, 2003).
description: Published as part of Ma, Lin, Wu, Yihong & Li, Xin Zheng, 2024, A new species of the genus Porirualia Huys & Mu, 2021 (Copepoda, Harpacticoida, Parastenheliidae) from the intertidal zone of Qingdao, China, with a key to species of the genus, pp. 241-252 in Zootaxa 5476 (1) on page 242, DOI: 10.11646/zootaxa.5476.1.21, http://zenodo.org/record/12726987
Additional file 2: of Phylogenomic analysis of carangimorph fishes reveals flatfish asymmetry arose in a blink of the evolutionary eye
Creators: name: Harrington, Richard
name: Faircloth, Brant
name: Eytan, Ron
name: W. Smith
name: Near, Thomas
name: Alfaro, Michael
name: Friedman, Matt
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Descriptions of fossil calibrations used in divergence dating analyses, including details of age priors and the fossil data upon which they are based. (DOCX 92Â kb)
Additional file 1: of Analysis of cervical resistance during continuous controllable balloon dilatation: controlled clinical and experimental study
Creators: name: Arsenijevic, Petar
name: Milosevic, Marko
name: Zivanovic, Aleksandar
name: Milicic, Biljana
name: Jeremic, Branislav
name: Filipovic, Nenad
name: Protrka, Zoran
name: Todorovic, Petar
name: Arsenijevic, Slobodan
Publisher: name: Figshare
Year: 2015
Subjects: Medicine
Cell Biology
Developmental Biology
Cancer

description: Consolidated Standards of Reporting Trials (CONSORT) 2010 checklist. (DOC 218 kb)
Additional file 1: of Phylogenomic analysis of carangimorph fishes reveals flatfish asymmetry arose in a blink of the evolutionary eye
Creators: name: Harrington, Richard
name: Faircloth, Brant
name: Eytan, Ron
name: W. Smith
name: Near, Thomas
name: Alfaro, Michael
name: Friedman, Matt
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Extended descriptions of protocols for DNA isolation, library preparation, sequencing, and data pipelining, and Additional file 1: Figures S1-S4. (DOCX 6704Â kb)
Additional file 2: of Analysis of cervical resistance during continuous controllable balloon dilatation: controlled clinical and experimental study
Creators: name: Arsenijevic, Petar
name: Milosevic, Marko
name: Zivanovic, Aleksandar
name: Milicic, Biljana
name: Jeremic, Branislav
name: Filipovic, Nenad
name: Protrka, Zoran
name: Todorovic, Petar
name: Arsenijevic, Slobodan
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Developmental Biology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences

description: CONSORT 2010 flow diagram. (DOC 52 kb)
Additional file 1: Table S1. of Recent horizontal transfer, functional adaptation and dissemination of a bacterial group II intron
Creators: name: FĂŠlix LaRoche-Johnston
name: Monat, Caroline
name: Benoit Cousineau
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 60506 Virology

description: Plasmids used in this Study. Table S2. Primers used in this Study. Table S3. Point Mutations between Ef.PcfG and Highly Homologous Full-Length Ll.LtrB variants in L. lactis. (PDF 1182Â kb)
Additional file 1: Figure S1. of Cascade: an RNA-seq visualization tool for cancer genomics
Creators: name: Shifman, Aaron
name: Johnson, Radia
name: Wilhelm, Brian
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Cascade database schema. The database schema for Cascade is shown with boxes differentiating the three principle data types. The tables in part A represent the user supplied RNA-seq results including gene expression, mutation status, CNVs and alternative splicing. The tables in section B represent annotation files for genes and transcripts in addition to insertions and deletions (Indels) and single nucleotide polymorphisms (SNPs) and their consequences. The last section (C) contains tables with information for predefined or custom biological pathways, the genes involved in the pathways, pathway annotation as well as disease associated gene lists. (PDF 1149Â kb)
Additional file 1: of Differential tissue accumulation of 2,3,7,8-Tetrachlorinated dibenzo-p-dioxin in Arabidopsis thaliana affects plant chronology, lipid metabolism and seed yield
Creators: name: Abdulsamie Hanano
name: Ibrahem Almousally
name: Mouhnad Shaban
name: Moursel, Nour
name: AbdAlbaset Shahadeh
name: Eskander Alhajji
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology
subject: 60506 Virology

description: Detection of TCDD in Arabidopsis tissues by HR/GC-MS. Diagrams indicate the presence of TCDD (Retention time ≈ 5.22) in the root (A, B and C) and in the shoot (D, E, and F) of 30-days old Arabidopsis exposed to various concentrations of TCDD 10, 50 and 100 ng L−1, respectively. G. TCDD standard. Three measurements were taken for three individual plants. Data are mean values ± SD (n = 6). (PDF 204 kb)
Gahrliepia (Gateria) anisochaeta Wang and Yan 1995
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Trombiculidae
Gahrliepia
Gahrliepia anisochaeta

description: Gahrliepia (Gateria) anisochaeta Wang and Yan, 1995:
PAL
Gateria (Gateria) anisochaeta, Wen & Gui 2000
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 24, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Additional file 4: of Gene-based SNP discovery in tepary bean (Phaseolus acutifolius) and common bean (P. vulgaris) for diversity analysis and comparative mapping
Creators: name: Gujaria-Verma, Neha
name: Ramsay, Larissa
name: Sharpe, Andrew
name: Lacey-Anne Sanderson
name: Debouck, Daniel
name: Bunyamin TarâAn
name: Bett, Kirstin
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology

description: Two-dimensional heat plot of pair-wise genetic distances among the loci in the 11 tepary bean linkage groups. Each linkage group is plotted in the linear order of the loci against itself and the degree of linkage between each locus indicated by a color. Red indicates tight linkage; green, unlinked. The first column at the right lists the locus name. The second column indicates the genetic distance. (DOCX 455Â kb)
Additional file 2: of Whoâ  s misbehaving? Perceptions of unprofessional social media use by medical students and faculty
Creators: name: Kitsis, Elizabeth
name: Felise Milan
name: Cohen, Hillel
name: Myers, Daniel
name: Herron, Patrick
name: McEvoy, Mimi
name: Weingarten, Jacqueline
name: Grayson, Martha
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Einstein Faculty Survey on Social Media. (PDF 460Â kb)
Additional file 1: of Whoâ  s misbehaving? Perceptions of unprofessional social media use by medical students and faculty
Creators: name: Kitsis, Elizabeth
name: Felise Milan
name: Cohen, Hillel
name: Myers, Daniel
name: Herron, Patrick
name: McEvoy, Mimi
name: Weingarten, Jacqueline
name: Grayson, Martha
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Einstein Medical Student Survey on Social Media. (PDF 437Â kb)
НЕДОСТАТКИ РЕЧИ У ДЕТЕЙ МЛАДШЕГО ШКОЛЬНОГО ВОЗРАСТА В НАЧАЛЬНЫХ КЛАССАХ КОРРЕКЦИОННОЙ ШКОЛЫ
Creators: name: Заболотина, А.А.
name: Ахмадова, С.
Publisher: name: Zenodo
Year: 2024

description: Статья посвящена актуальным проблемам изучения речи детей младшего школьного возраста с умственной отсталостью, психолого-педагогической характеристики их развития.
title: A conceptual classification scheme of invasion science
Creators: name: Musseau, Camille L.
name: Bernard-Verdier, Maud
name: Heger, Tina
name: Skopeteas, Leonidas H.
name: Strasiewsky, David
name: Mietchen, Daniel
name: Jeschke, Jonathan M.
Publisher: name: Freie Universität Berlin
Year: 2024
Subjects: subject: biological invasions
subject: hierarchy-of-hypotheses (HoH) approach
subject: knowledge mapping
subject: meta-invasion science
subject: research themes
classificationCode: 570
subject: Biowissenschaften; Biologie

description: In the era of big data and global biodiversity decline, there is a pressing need to transform data and information into findable and actionable knowledge. We propose a conceptual classification scheme for invasion science that goes beyond hypothesis networks and allows to organize publications and data sets, guide research directions, and identify knowledge gaps. Combining expert knowledge with literature analysis, we identified five major research themes in this field: introduction pathways, invasion success and invasibility, impacts of invasion, managing biological invasions, and meta-invasion science. We divided these themes into 10 broader research questions and linked them to 39 major hypotheses forming the theoretical foundation of invasion science. As artificial intelligence advances, such classification schemes will become important references for organizing scientific information. Our approach can be extended to other research fields, fostering cross-disciplinary connections to leverage the scientific knowledge needed to address Anthropocene challenges.
Additional file 3: Figure S2. of Dependability of results in conference abstracts of randomized controlled trials in ophthalmology and author financial conflicts of interest as a factor associated with full publication
Creators: name: Saldanha, Ian
name: Scherer, Roberta
name: Rodriguez-Barraquer, Isabel
name: Jampel, Henry
name: Dickersin, Kay
Publisher: name: Figshare
Year: 2016
Subjects: Space Science
Medicine
Cancer
Science Policy

description: Unadjusted associations between the statistical significance of the results for the main outcome in abstracts of randomized controlled trials (RCTs) presented at Association for Research in Vision and Ophthalmology (ARVO) conferences during years 2001â  2004 and likelihood of publication of those abstracts. Results of the observed results and hypothetical analyses are presented under five different assumptions about the proportion of abstracts with statistical significance of results for the main outcome among abstracts not reporting statistical significance of results for the main outcome. (DOCX 52 kb)
A Distributed Hypergradient Algorithm for Intervention in Games
Creators: name: Grontas, Panagiotis
Publisher: name: ETH Zurich
Year: 2022

description: Hierarchical optimization problems, such as bilevel programs and Stackelberg games, are attracting increasing interest in both engineering and machine learning communities. Yet, existing solution methods lack either convergence guarantees or computational efficiency, due to the absence of smoothness and convexity in bilevel problems. We address this gap in the literature by designing a double-loop first-order method for single-leader multi-follower bilevel games and mathematically establishing its convergence using novel tools from nonsmooth analysis. To obtain the hypergradient, i.e., the gradient of the upper-level objective, we develop a scheme that simultaneously computes the lower-level solution and its Jacobian, i.e., the sensitivity. Crucially, our scheme is amenable to a distributed implementation that renders it scalable and privacypreserving. We numerically verify the computational efficiency of our algorithm on a large-scale Stackelberg-based demand response model, and show that it significantly outperforms a popular solution approach in the literature.
MANAGEMENT OF MODEL LEARNING OF THINK-PAIR-SHARE  (TPS) IN IMPROVING STUDENT LEARNING RESULTS IN CHEMISTRY SUBJECTS MATTER (CASE STUDY AT SMAN 1 KOTA SUKABUMI AND SMAN 5 CIMAHI)
Creators: name: RHANI SRI ERVINA
name: IIM WASLIMAN
name: AYI NAJMUL HIDAYAT
name: WASKA WARTA
Publisher: name: Zenodo
Year: 2024
Subjects: Management, Think-Fair-Share Learning, Student Learning Outcomes.

description: Abstract

The problem of difficulty learning chemistry can be caused by several factors, including learning models that do not suit students' needs, which can also make it difficult to understand chemistry material and anxiety related to learning chemistry can also affect students' ability to understand the material. Learning management is very important because it helps teachers manage the learning process effectively and efficiently, ensure optimal use of resources, and create an inclusive and positive learning environment for students. With good learning management, teachers can manage diversity in the classroom, encourage students' active engagement, and facilitate the development of their pedagogical skills. In addition, learning management helps teachers measure student progress periodically and provide necessary feedback to improve learning. Overall, learning management is a key element in creating effective and meaningful learning experiences for students. The aim of this research is to obtain an overview and analyze: planning, organizing, implementing evaluations, problems and solutions to Think-Pair-Share model learning in improving student learning outcomes in chemistry subjects. Theory this research uses management theory from George R. Terry and constructivist learning theory from Lev Vygotsky. This research uses a qualitative approach with case study research methods, data collection techniques using interviews, documentation and observation. The research results describe that the management of the Think-Pair-Share learning model in: (1) planning, (2) implementation, (3) organizing, (4) implementation, and (5) evaluation has been implemented in accordance with the principles of the Think-Pair learning model. Pair-Share at SMAN 1 Sukabumi and SMAN 5 Cimahi. The conclusion is that the Think-Fair-Share (TPS) learning model in improving student learning outcomes at SMAN 1 Sukabumi and SMAN 5 Cimahi has been implemented quite well and applies management functions starting from planning, organizing, implementing and evaluating.
Additional file 4: Table S2. of Dependability of results in conference abstracts of randomized controlled trials in ophthalmology and author financial conflicts of interest as a factor associated with full publication
Creators: name: Saldanha, Ian
name: Scherer, Roberta
name: Rodriguez-Barraquer, Isabel
name: Jampel, Henry
name: Dickersin, Kay
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy

description: Differences in authorship order comparing 230 conference abstracts with their corresponding publications. (DOCX 12 kb)
Additional file 2: Figure S1. of Dependability of results in conference abstracts of randomized controlled trials in ophthalmology and author financial conflicts of interest as a factor associated with full publication
Creators: name: Saldanha, Ian
name: Scherer, Roberta
name: Rodriguez-Barraquer, Isabel
name: Jampel, Henry
name: Dickersin, Kay
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: Science Policy

description: Abstracts presented at Association for Research in Vision and Ophthalmology (ARVO) conferences during years 2001â  2004. (DOCX 58 kb)
Additional file 1: Table S1. of Dextran sulfate inhibits acute Toxoplama gondii infection in pigs
Creators: name: Kato, Kentaro
name: Yuho Murata
name: Horiuchi, Noriyuki
name: Inomata, Atsuko
name: Terkawi, Mohamad
name: Ishiwa, Akiko
name: Yohsuke Ogawa
name: Fukumoto, Shinya
name: Fumikazu Matsuhisa
name: Koyama, Kenji
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Primers used in the study. (DOCX 14 kb)
Gahrliepia (Gateria) banyei Nielsen & Robbins & Rueda 2021
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Trombiculidae
Gahrliepia
Gahrliepia banyei

description: Gahrliepia (Gateria) banyei (Xiang and Wen, 1984a):
PAL
Gateria (Jiapiania) banyei Xiang and Wen, 1984 a
Gateria (Gateria) banyei, Wen & Gui 2004
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 24, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Additional file 1: of Lifestyle including dietary habits and changes in coronary artery calcium score: a retrospective cohort study
Creators: name: Cheong, EunSun
name: Lee, Jong-Young
name: Lee, Sung
name: Kang, Jin-Ho
name: Bum-Soo Kim
name: Kim, Byung
name: Ki-Chul Sung
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Science Policy
subject: Hematology

description: Multivariate hazard ratios (HRs) for CAC score according to quartile of macronutrients intake (two year follow up data). (DOCX 19Â kb)
The Switzerland agent-based scenario
Creators: name: Tchervenkov, Christopher
name: Kagho, Grace Orowo
name: Sallard, Aurore
name: Hörl, Sebastian
name: Balać, Miloš
name: Axhausen, Kay W.
Publisher: name: ETH Zurich
Year: 2022
Subjects: Switzerland
Scenario
Pipeline
Agent-based
MATSim

description: Arbeitsberichte Verkehrs- und Raumplanung, 1802
High-resolution amplification model for an urban area using the weak motion from earthquakes and ambient vibration data
Creators: name: Janusz, Paulina
name: Perron, Vincent
name: Knellwolf, Christoph
name: Bonilla, Luis Fabian
name: Fäh, Donat
Publisher: name: ETH Zurich
Year: 2022

description: Seismological Research Letters, 93 (2B)
description: ISSN:0895-0695
description: ISSN:1938-2057
MOESM1 of Familial hepatocellular carcinoma in an endemic area: two case reports
Creators: name: Weledji, Elroy
name: Dickson Nsagha
name: Enoworock, George
name: Mouladje, Maurice
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biophysics
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer

description: Additional file 1. Familial hepatocellular carcinoma.
Additional file 2: of Retrospective, controlled observational case study of patients with central retinal vein occlusion and initially low visual acuity treated with an intravitreal dexamethasone implant
Creators: name: Winterhalter, Sibylle
name: Brocke, Gerrit Vom
name: Pilger, Daniel
name: Eckert, Annabelle
name: Schlomberg, Juliane
name: RĂźbsam, Anne
name: Klamann, Matthias
name: Enken Gundlach
name: Dietrich-Ntoukas, Tina
name: Joussen, Antonia
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Computational Biology

description: a-c) waterfall plots of the ETDRS letter change 1 to 5Â months after DEX implantation compared to baseline of the control group. (DOCX 48 kb)
Additional file 1: of Retrospective, controlled observational case study of patients with central retinal vein occlusion and initially low visual acuity treated with an intravitreal dexamethasone implant
Creators: name: Winterhalter, Sibylle
name: Brocke, Gerrit Vom
name: Pilger, Daniel
name: Eckert, Annabelle
name: Schlomberg, Juliane
name: RĂźbsam, Anne
name: Klamann, Matthias
name: Enken Gundlach
name: Dietrich-Ntoukas, Tina
name: Joussen, Antonia
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: a-c) waterfall plots of the ETDRS letter change 1 to 5Â months after DEX implantation compared to baseline of the low VA group. (DOCX 48 kb)
Additional file 1: Table S1. of Ex vivo identification and characterization of a population of CD13high CD105+ CD45− mesenchymal stem cells in human bone marrow
Creators: name: Muñiz, Carmen
name: Teodosio, Cristina
name: Mayado, Andrea
name: Amaral, Ana
name: Matarraz, Sergio
name: Bárcena, Paloma
name: Sanchez, Maria
name: Alvarez-Twose, Iván
name: Diez-Campelo, María
name: García-Montero, Andrés
name: Blanco, Juan
name: Cañizo, Maria Del
name: Montes, Javier Del Pino
name: Orfao, Alberto
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Computational Biology

description: List of antibodies used for the identification, characterization and isolation of bone marrow mesenchymal stem cells, including CD13high CD105+ and CD45– cells. (DOC 41 kb)
Empirical amplification model for the city of Lucerne, Switzerland
Creators: name: Janusz, Paulina
name: Perron, Vincent
name: Knellwolf, Christoph
name: Imperatori, Walter
name: Bonilla, Luis Fabian
name: Fäh, Donat
Publisher: name: ETH Zurich
Year: 2021

description: 37th General Assembly of the European Seismological Commission (ESC 2021). Book of Abstracts
Gravity Field Modelling
Creators: name: Koch, Julia Azumi
name: Rothacher, Markus
name: Marti, Urs
name: Willi, Daniel
Publisher: name: ETH Zurich
Year: 2022

description: For the construction and maintenance of large-scale infrastructure such as the Gotthard Base Tunnel or the CERN-FCC, it is vital to take into account the influence of the varying gravity field, because most geodetic measurements are referring to the local plumb lines and equipotential surfaces, deviating from purely geometrical positioning by e.g. GNSS.
The so-called Geoid, an equipotential surface of the gravity potential field, describes the idealized continuation of the mean surface of the oceans beneath the continents and is in general used as reference surface for the definition of physical heights. Different approaches exist to compute a local or regional model of the gravity potential field and the Geoid. Due to uncertainties, gaps in the measurements and simplifications in the modeling, existing geoid models differ by up to several centimeters in the FCC region. In this talk, the deviation between different geoid models available nowadays is shown and an overview to gravity field modelling using a selection of measuring instruments is given. Furthermore, the preliminary analysis of geodetic data (leveling, gravimetric measurements, deflection of the vertical and GNSS positions) collected along a profile, which was specifically selected to validate the calculated Geoid models, is presented.
Additional file 6: of Regulation of constitutive and alternative mRNA splicing across the human transcriptome by PRPF8 is determined by 5′ splice site strength
Creators: name: Vihandha Wickramasinghe
name: Gonzàlez-Porta, Mar
name: Perera, David
name: Bartolozzi, Arthur
name: Sibley, Christopher
name: Hallegger, Martina
name: Ule, Jernej
name: Marioni, John
name: Venkitaraman, Ashok
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Inefficiently spliced introns and exons that are differentially used do not have weaker 3′ splice sites. a Inefficiently spliced introns do not have weaker 3′ splice sites. A set of 200 retained introns (RI) were selected based on fold change differences (see “Materials and methods”), and non-retained introns (NRI) within the same set of genes were used as a contrast. A 3′ splice site strength analysis was then carried out as described in “Materials and methods” for each subset. b Motif enrichment analysis on the same set of genes shows that the most frequently identified motifs correspond to the consensus 3′ splice site sequences for both retained (RI) and non-retained introns (NRI) and there is no significant change in the percentage of targets with such motifs. c Differentially used exons do not have weaker 3′ splice sites. A 3′ splice site strength analysis was carried out as described in “Materials and methods” for each subset. (PDF 63 kb)
Additional file 4: of Regulation of constitutive and alternative mRNA splicing across the human transcriptome by PRPF8 is determined by 5â ˛ splice site strength
Creators: name: Vihandha Wickramasinghe
name: Lez-Porta, Mar GonzĂ
name: Perera, David
name: Bartolozzi, Arthur
name: Sibley, Christopher
name: Hallegger, Martina
name: Ule, Jernej
name: Marioni, John
name: Venkitaraman, Ashok
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer

description: Validation of mitotic arrest following PRPF8 depletion with two independent siRNAs. a U2OS osteosarcoma cells depleted of PRPF8 using two independent siRNAs and monitored by phase-contrast time-lapse microscopy spend significantly longer in mitosis (measured from nuclear envelope breakdown (NEB) to chromatin decondensation), as opposed to control cells, in which mitosis lasts, on average, <60 min. Statistically significant pairwise comparisons are shown (***p < 0.001). b Introduction of properly spliced and processed mRNA into Control siRNA-treated cells has no effect on mitotic index. Control siRNA-treated cells were transfected with properly spliced and processed mRNA purified from whole cells and analyzed for mitotic index. Plots represent the mean from two independent experiments Âą standard error of the mean. n.s. not significant. (PDF 77 kb)
Additional file 9: of Regulation of constitutive and alternative mRNA splicing across the human transcriptome by PRPF8 is determined by 5′ splice site strength
Creators: name: Vihandha Wickramasinghe
name: Gonzàlez-Porta, Mar
name: Perera, David
name: Bartolozzi, Arthur
name: Sibley, Christopher
name: Hallegger, Martina
name: Ule, Jernej
name: Marioni, John
name: Venkitaraman, Ashok
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Transcription initiation is similar in control siRNA-treated and PRPF8-depleted cells. a Delay between detection of the unspliced nascent transcript and the partially spliced transcript for UBE2R2 is similar in both PRPF8-depleted and control siRNA-treated cells. Kinetics of transcription and splicing recovery for UBE2R2, a gene whose splicing was unaffected by PRPF8 depletion as determined in our RNA-sequencing data, following release from drug-induced transcriptional arrest were measured in control siRNA-treated and PRPF8-depleted cells in a similar fashion to that shown in Fig. 8d. b Transcription of the first exon–intron junction of the four target genes following release from DRB in PRPF8-depleted and control siRNA-treated cells was measured. Primer pairs used span exon 1: intron 1 and thus measure transcription initiation following release from drug-induced transcriptional arrest. (PDF 198 kb)
Gahrliepia (Gateria) barbigera Traub and Morrow 1957
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Trombiculidae
Gahrliepia
Gahrliepia barbigera

description: Gahrliepia (Gateria) barbigera Traub and Morrow, 1957:
ORI
Gahrliepia (Gahrliepia) barbigera Traub and Morrow, 1957
Gahrliepia (Gateria) barbigera, Vercammen-Grandjean 1968c
Gahrliepia barbigera, Fernandes & Kulkarni 2003
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 24, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Additional file 3: of Regulation of constitutive and alternative mRNA splicing across the human transcriptome by PRPF8 is determined by 5′ splice site strength
Creators: name: Vihandha Wickramasinghe
name: Gonzàlez-Porta, Mar
name: Perera, David
name: Bartolozzi, Arthur
name: Sibley, Christopher
name: Hallegger, Martina
name: Ule, Jernej
name: Marioni, John
name: Venkitaraman, Ashok
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Altered splicing of transcripts encoding proteins required for mitotic progression after PRPF8 depletion. a RT-PCR analysis of RNA from PRPF8-depleted cells reveals a variety of splicing defects in transcripts that encode critical factors required for mitotic progression, including a retained intron (NUDC) and skipped exons (ASPM and SKA2). RTPCR analysis of ASPM, NUDC, and SKA2 using the primers indicated in the schematic are shown alongside the corresponding sashimi plots (control siRNA in black, PRPF8 siRNA in red). The splicing defects are indicated by arrowheads and counts spanning splice site junctions that change in the skipped exons are also indicated. b, c Splicing alterations in mitotic genes do not normally occur during transit through mitosis. Cal51 cells treated with nocodazole for 4 or 15 hours to induce mitotic arrest were monitored for mitotic index (b), and analyzed by qRT-PCR for splicing alterations previously observed following PRPF8 depletion (see Fig. 2) (c). Plots are relative to RNA levels in control siRNA-treated cells, assigned an arbitrary value of 1, and show the mean of triplicate readings from three independent experiments ± standard error of the mean (SEM). Mitotic index plots also show the mean from three independent experiments ± SEM. (PDF 264 kb)