cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
THE EFFECT OF CHARACTERS’ LOCOMOTON ON AUDIENCE PERCEPTION OF CROWD ANIMATION
Creators: name: Zhang, Wenyu
Publisher: name: Purdue University Graduate School
Year: 2021
Subjects: Computer graphics

description: A common practice in crowd animation is the use of human templates. A human template is a 3D character defined by its mesh, skeletal structure, materials, and textures. A crowd simulation is created by repeatedly instantiating a small set of human templates. For each instance, one texture is randomly chosen from the template’s available texture set, and color and shape variety techniques are applied so that multiple instances of the same template appear different (Thalmann & Musse, 2013). When dealing with very large crowds, it is inevitable to end up with instances that are exactly identical to other instances, as the number of different textures and shape modifications is limited. This poses a problem for crowd animation, as the viewers’ perception of identical characters could significantly decrease the believability of the crowd simulation. A variety of factors could affect viewers’ perception of identical characters, including crowd size, distance of the characters from the camera, background, movement, lighting conditions, etc. The study reported in this paper examined the extent to which the type of locomotion of the crowd characters affects the viewer’s ability to perceive identical instances within a medium size crowd (20 characters). The experiment involved 51 participants and compared the time the participants took to recognize two identical characters in three different locomotion scenarios (i.e. standing, walking, and running). Findings show that the type of locomotion did not have a statistically significant effect on the time subjects took to identify identical characters within the crowd. Hence, results suggest that audience perception of identical characters in a medium size crowd is not affected by the type of movement of the characters.
sj-pdf-1-ajs-10.1177_03635465211030259 – Supplemental material for Quadriceps Tendon Autograft Versus Bone–Patellar Tendon–Bone and Hamstring Tendon Autografts for Anterior Cruciate Ligament Reconstruction: A Systematic Review and Meta-analysis
Creators: name: Dai, Wenli
name: Leng, Xi
name: Wang, Jian
name: Cheng, Jin
name: Hu, Xiaoqing
name: Ao, Yingfang
Publisher: name: SAGE Journals
Year: 2021
Subjects: Orthopaedics
Sports Medicine
Surgery

description: Supplemental material, sj-pdf-1-ajs-10.1177_03635465211030259 for Quadriceps Tendon Autograft Versus Bone–Patellar Tendon–Bone and Hamstring Tendon Autografts for Anterior Cruciate Ligament Reconstruction: A Systematic Review and Meta-analysis by Wenli Dai, Xi Leng, Jian Wang, Jin Cheng, Xiaoqing Hu and Yingfang Ao in The American Journal of Sports Medicine
ION-MOLECULE REACTIONS STUDIED BY USING DENSITY FUNCTIONAL THEORY CALCULATIONS AND MASS SPECTROMETRY FOR SATURATED HYDROCARBON ANALYSIS AND THE STUDY OF ORTHO- AND PARA-PYRIDYNES
Creators: name: Milton, Jacob R
Publisher: name: Purdue University Graduate School
Year: 2021
Subjects: Analytical spectrometry
Computational chemistry
Organic chemistry not elsewhere classified
Physical organic chemistry
Theoretical quantum chemistry

description: The work described herein is related to gas-phase ion-molecule reactions studied by using mass spectrometry. Chapter 2 describes density functional theory, a method used in chapters 4 and 5 to propose reaction mechanisms for reactions previously observed by others by using mass spectrometry. Chapter 3 describes a study that demonstrates that the fragmentation of saturated hydrocarbons occurs due to proton-transfer reactions that occur between these species and protonated molecules generated from molecules present in air such as nitrogen and water. Saturated hydrocarbons are studied in a wide variety of fields, and better methods to analyze complex mixtures of these compounds would facilitate their analysis. Chapter 4 discusses mechanisms of reactions for previously studied ion-molecule reactions of pyridynes studied by others by using mass spectrometry. Reactions of pyridynes are important to study arynes have been previously used in organic synthesis, and pyridine moieties are particularly common in biological compounds. Chapter 5 discusses density functional theory calculations used to determine why some organic polyradical undergo hydride abstractions from cyclohexane while others do not. The study discusses reactions taking place between both singlet and triplets states of the 2,5-didehydropyridinium cation and cyclohexane as a model, which are compared to reactions of the 2-pyridyl cation and 2-dehydropyridinium cation with cyclohexane. These studies may help improve our understanding of the reactivity-controlling factors of organic polyradicals, which may help improve toxic drug candidates like cytostatic enediynes.
sj-docx-1-jom-10.1177_01492063211040554 – Supplemental material for Interorganizational Spillover: A Review and a Proposal for Future Research
Creators: name: Shi, Wei
name: Wajda, Dennis
name: Aguilera, Ruth V.
Publisher: name: SAGE Journals
Year: 2021
Subjects: Organisation and Management Theory

description: Supplemental material, sj-docx-1-jom-10.1177_01492063211040554 for Interorganizational Spillover: A Review and a Proposal for Future Research by Wei Shi, Dennis Wajda and Ruth V. Aguilera in Journal of Management
sj-docx-1-prf-10.1177_02676591211043700 – Supplemental material for Risk factors and treatment of oxygenator high-pressure excursions during cardiopulmonary bypass
Creators: name: Hjärpe, Anders Karl
name: Jeppsson, Anders
name: Lannemyr, Lukas
name: Lindgren, Martin
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: Cardiology
subject: 110323 Surgery
subject: FOS: Clinical medicine

description: Supplemental material, sj-docx-1-prf-10.1177_02676591211043700 for Risk factors and treatment of oxygenator high-pressure excursions during cardiopulmonary bypass by Anders Karl Hjärpe, Anders Jeppsson, Lukas Lannemyr and Martin Lindgren in Perfusion
Preliminary Analysis of Traffic-Related Pollutants Measurements in Different Petaling Jaya Streets
Creators: name: MOHAMAD, Nur Diyana
name: Zulfa Hanan ASH'AARI
name: ABDULLAH, Ahmad Makmom
name: Faradiella Mohd KUSIN
name: YAHAYA, Noor Zaitun
Publisher: name: The Thai Society of Higher Education Institutes on Environment
Year: 2018
Subjects: Trends
Traffic pollutant
Localized
Interpolation

description: EnvironmentAsia, 11, 2, 23-37
Additional file 1 of Low-temperature synthesis of colloidal few-layer WTe2 nanostructures for electrochemical hydrogen evolution
Creators: name: Xie, Rui
name: Luo, Wenchen
name: Zou, Luwei
name: Fan, Xiulian
name: Li, Cheng
name: Lv, Tiezheng
name: Jiang, Jinming
name: Chen, Zhihui
name: Zhou, Yu
Publisher: name: figshare
Year: 2024
Subjects: subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Supplementary file 1 (DOCX 1180 kb)
Understanding the Nature of Mentoring Relationships During an Undergraduate Research Experience
Creators: name: Crowell, Bethany Anne Butson
Publisher: name: Purdue University Graduate School
Year: 2021
Subjects: Educational psychology

description: This qualitative study examined how university students learn to engage in the practices of scientific inquiry via research apprenticeships and how such experiences prepare them to be STEM literate. Surveys and interviews addressed two primary research questions: 1. What is the nature of interaction between student participant and faculty mentor? Subsidiary question: What is the role of technology in the mentoring relationship? 2. How do students and faculty describe the development of STEM literacies in the undergraduate research experience? Subsidiary question: How does the mentoring process contribute to the development of STEM literacies? Results demonstrated the importance of learning by engaging in authentic activity under the guidance of mentor experts, the undergraduate research experience helps enable acquisition of STEM literacies but mere participation in research experiences does not always lead to high quality learning, mentoring relationships are not all the same, and the use of technology in undergraduate research experiences varies. Overall the study concludes that students find undergraduate research experiences beneficial as compared to other experiences. Research afforded them the opportunity to understand how research can be applied and gain knowledge that they would not have gained in the classroom.
sj-doc-1-ems-10.1177_14690667211040912 - Supplemental material for High-resolution mass spectrometry reveals a complex ganglioside pattern and novel polysialylated structures associated with the human motor cortex
Creators: name: Ica, Raluca
name: Munteanu, Cristian VA
name: Vukelic, Zeljka
name: Zamfir, Alina D
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 91299 Materials Engineering not elsewhere classified
subject: FOS: Materials engineering

description: Supplemental material, sj-doc-1-ems-10.1177_14690667211040912 for High-resolution mass spectrometry reveals a complex ganglioside pattern and novel polysialylated structures associated with the human motor cortex by Raluca Ica, Cristian VA Munteanu, Zeljka Vukelic and Alina D Zamfir in European Journal of Mass Spectrometry
A Refmac Web Service For Em And Nmr
Creators: name: Lamzin, Victor
Publisher: name: Zenodo
Year: 2018

description: A web service for cryo-EM models refinement was built based on the next-generation ARP/wARP web infrastructure and using REFMAC ["Refinement of Macromolecular Structures by the Maximum-Likelihood method" G.N. Murshudov, A.A.Vagin and E.J.Dodson, (1997) in Acta Cryst. D53, 240-255.].

The new web service is accessible from the web front end, CCP4i interface and the Balbes web server. The entry has been further expanded to accommodate the submissions from the molecular replacement pipelines Morda and MrBump.
Additional file 8 of Effect of volume infusion on left atrial strain in acute circulatory failure
Creators: name: Cicetti, Marta
name: Bagate, François
name: Lapenta, Cristina
name: Gendreau, Ségolène
name: Masi, Paul
name: Mekontso Dessap, Armand
Publisher: name: figshare
Year: 2024
Subjects: subject: Biophysics
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Neuroscience
subject: Physiology
subject: Biotechnology
subject: Mental Health
subject: Computational Biology

description: Supplementary Material 8
sj-pdf-1-jod-10.1177_00220426211040564 – Supplemental Material for Substance Use and Chemsex in MSM - A Latent Class Analysis
Creators: name: Scholz-Hehn, Anne Deborah
name: Milin, Sascha
name: Schulte, Bernd
name: Reimer, Jens
name: Buth, Sven
name: Schäfer, Ingo
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: FOS: Clinical medicine
subject: 160299 Criminology not elsewhere classified
subject: FOS: Law

description: Supplemental Material, sj-pdf-1-jod-10.1177_00220426211040564 for Substance Use and Chemsex in MSM - A Latent Class Analysis by Anne Deborah Scholz-Hehn, Sascha Milin, Bernd Schulte, Jens Reimer, Sven Buth and Ingo Schäfer in Journal of Drug Issues
sj-pdf-1-tih-10.1177_07482337211034711 – Supplemental Material for Nickel nanoparticles induce hepatotoxicity via oxidative and nitrative stress-mediated apoptosis and inflammation
Creators: name: Iqbal, Shabnoor
name: Jabeen, Farhat
name: Peng, Cheng
name: Shah, Muhammad Ajmal
name: Ijaz, Muhammad Umar
name: Rasul, Azhar
name: Ali, Shujat
name: Rauf, Abdur
name: Batiha, Gaber ES
name: Kłodzińska, Ewa
Publisher: name: SAGE Journals
Year: 2021
Subjects: Pharmacology and Pharmaceutical Sciences not elsewhere classified

description: Supplemental Material, sj-pdf-1-tih-10.1177_07482337211034711 for Nickel nanoparticles induce hepatotoxicity via oxidative and nitrative stress-mediated apoptosis and inflammation by Shabnoor Iqbal, Farhat Jabeen, Cheng Peng, Muhammad Ajmal Shah, Muhammad Umar Ijaz, Azhar Rasul, Shujat Ali, Abdur Rauf, Gaber ES Batiha and Ewa Kłodzińska in Toxicology and Industrial Health
Learning-based Attack and Defense on Recommender Systems
Creators: name: Sundar, Agnideven Palanisamy
Publisher: name: Purdue University Graduate School
Year: 2021
Subjects: Knowledge representation and reasoning
Networking and communications
System and network security

description: The internet is the home for massive volumes of valuable data constantly being created, making it difficult for users to find information relevant to them. In recent times, online users have been relying on the recommendations made by websites to narrow down the options. Online reviews have also become an increasingly important factor in the final choice of a customer. Unfortunately, attackers have found ways to manipulate both reviews and recommendations to mislead users. A Recommendation System is a special type of information filtering system adapted by online vendors to provide suggestions to their customers based on their requirements. Collaborative filtering is one of the most widely used recommendation systems; unfortunately, it is prone to shilling/profile injection attacks. Such attacks alter the recommendation process to promote or demote a particular product. On the other hand, many spammers write deceptive reviews to change the credibility of a product/service. This work aims to address these issues by treating the review manipulation and shilling attack scenarios independently. For the shilling attacks, we build an efficient Reinforcement Learning-based shilling attack method. This method reduces the uncertainty associated with the item selection process and finds the most optimal items to enhance attack reach while treating the recommender system as a black box. Such practical online attacks open new avenues for research in building more robust recommender systems. When it comes to review manipulations, we introduce a method to use a deep structure embedding approach that preserves highly nonlinear structural information and the dynamic aspects of user reviews to identify and cluster the spam users. It is worth mentioning that, in the experiment with real datasets, our method captures about 92\% of all spam reviewers using an unsupervised learning approach.
sj-pdf-1-gsj-10.1177_21925682211047551 – Supplemental Material for Impact of Navigation on 30-Day Outcomes for Adult Spinal Deformity Surgery
Creators: name: Katz, Austen D.
name: Galina, Jesse
name: Song, Junho
name: Hasan, Sayyida
name: Perfetti, Dean
name: Virk, Sohrab
name: Silber, Jeff
name: Essig, David
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: 110314 Orthopaedics
subject: 110604 Sports Medicine
subject: FOS: Health sciences
subject: 110323 Surgery

description: Supplemental Material, sj-pdf-1-gsj-10.1177_21925682211047551 for Impact of Navigation on 30-Day Outcomes for Adult Spinal Deformity Surgery by Austen D. Katz, Jesse Galina, Junho Song, Sayyida Hasan, Dean Perfetti, Sohrab Virk, Jeff Silber and David Essig in Global Spine Journal
Fundamental Constraints And Provably Secure Constructions Of Anonymous Communication Protocols
Creators: name: Das, Debajyoti
Publisher: name: Purdue University Graduate School
Year: 2021
Subjects: Applied computing not elsewhere classified
Networking and communications

description: Anonymous communication networks (ACNs) are critical to communication privacy over the internet as they enableindividuals to maintain their privacy from untrusted intermediaries and endpoints.Typically, ACNs involve messages traveling through some intermediaries before arriving at their destinations, and therefore they introduce network latency and bandwidth overheads.
The goal of this work is to investigate the fundamental constraints of anonymous communication (AC) protocols.We analyze the relationship between bandwidth overhead, latency overhead, and sender anonymity or recipient anonymity against a global passive (network-level) adversary. We confirm the widely believed trilemma that an AC protocol can only achieve two out of the following three properties: strong anonymity (i.e., anonymity up to a negligible chance),low bandwidth overhead, and low latency overhead.
We further study anonymity against a stronger global passive adversary that can additionally passively compromise some of the AC protocol nodes.For a given number of compromised nodes, we derive as a necessary constraint a relationship between bandwidth and latency overhead whose violation make it impossible for an AC protocol to achieve strong anonymity. We analyze prominent AC protocols from the literature and depict to which extent those satisfy our necessary constraints. Our fundamental necessary constraints offer a guideline not only for improving existing AC systems but also for designing novel AC protocols with non-traditional bandwidth and latency overhead choices.
Using the guidelines indicated by our fundamental necessary constraints we provide two efficient protocol constructions.First, we design a mixnet-based AC protocol Streams that provides provable mixing guarantees with the expense of latency overhead. Streams realizes a trusted third party stop-and-go mix as long as each message stays in the system for $\omega(\log \eta)$ rounds.Second, we offer a DC-net based design OrgAn that can provide strong sender anonymity with constant latency at the expense of bandwidth overhead. OrgAn solves the problem of regular requirements of key and slot agreement present in typical DC-net based protocols, by utilizing a client/relay/server architecture.
The Influence of Peer Relationships on Political Socialization Among College Students
Creators: name: Isaacs, Zachary Thomas
Publisher: name: Purdue University Graduate School
Year: 2021
Subjects: Communication studies

description: Political socialization has been of interest to political science and communication scholars for decades. Focusing primarily on parents, few studies have examined how peer relationships can affect the political socialization process. Additionally, much of the literature does not examine political socialization past the age of 18. Using social penetration theory, this study proposes that the unique features of the college context—independence, new relationships, political organizations—make it a particularly ripe context for political socialization to occur. The study utilized a survey-based to test this assumption and examine if/how college students between the ages of 18 and 24 are communicating with their peers and to what political socialization effect. The findings contribute to political socialization literature, social penetration theory, and our understanding of how young people talk about politics.
EFFECTS OF HYDROCEPHALUS ON RODENT OPTIC NERVE AND OPTIC DISC
Creators: name: Mccue, Rachel A
Publisher: name: Purdue University Graduate School
Year: 2021
Subjects: Animal neurobiology
Neurosciences not elsewhere classified

description: Hydrocephalus affects 1 in 1,000 newborns and nearly 1,000,000 Americans, leading to an increase in intercranial pressure due to the build-up of cerebrospinal fluid. There are numerous complications that arise as a result of hydrocephalus, but this study focuses on optic disc edema. The subarachnoid space surrounding the optic nerve contains cerebrospinal fluid. The cerebrospinal fluid increases in hydrocephalus, putting pressure on the optic nerve. The additional intracranial pressure has been proposed to cause axoplasmic stasis within the retinal ganglion cell axons, leading to axonal damage and retinal ischemia. The purpose of this study was to determine the effects of hydrocephalus on the optic disc and retina in several animal models of hydrocephalus. This study uses two genetic and two injury-induced models of hydrocephalus in addition to immunohistochemistry and histological stains to examine the optic disc, thickness of retinal layers, and numbers of retinal cells. This study serves as preliminary work to help build the case that hydrocephalus causes cell loss in the retina, as well as swelling of the retinal ganglion cell axons, leading to axoplasmic stasis and cell death.
Additional file 1 of Comparative physiology and transcriptome response patterns in cold-tolerant and cold-sensitive varieties of Solanum melongena
Creators: name: cai, Peng
name: lan, Yanhong
name: Gong, Fangyi
name: Li, Chun
name: Xia, Feng
name: Li, Yifan
name: Fang, Chao
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Supplementary Material 1
Supplemental material for this article is available online.
Creators: name: Wike, Traci L.
name: Bouchard, Leah M.
name: Kemmerer, Aaron
name: Yabar, Mauricio P.
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 160299 Criminology not elsewhere classified
subject: FOS: Law

description: Supplemental Material for Victimization and Resilience: Experiences of Rural LGBTQ+ Youth Across Multiple Contexts by Traci L. Wike, Leah M. Bouchard, Aaron Kemmerer and Mauricio P. Yabar, in Journal of Interpersonal Violence
SPATIAL AND TEMPORAL VARIATION IN THE HABITAT QUALITY AND RESOURCE UTILIZATION OF FISHES IN A LARGE LAKE ECOSYSTEM
Creators: name: Tellier, Joshua Matthew
Publisher: name: Purdue University Graduate School
Year: 2021
Subjects: Ecosystem function
Animal physiological ecology
Community ecology (excl. invasive species ecology)
Freshwater ecology
Population ecology
Fisheries management

description: The prevalence of hypoxia in aquatic systems has increased in recent decades and climate change is expected to worsen the extent and severity of hypoxic phenomena worldwide. Moreover, aquatic hypoxia has produced adverse ecological consequences and stimulated research interest within the Laurentian Great Lakes. The physiological stress imposed by hypoxia reduces habitat quality for most aquatic biota and causes changes in patterns of resource use and food web dynamics. We conducted a review of the primary literature to identify trends in prevalence of Great Lakes hypoxia research and broadly classify the unique hypoxic conditions afflicting Great Lakes ecosystems. We found that the majority of research effort toward Great Lakes hypoxia is focused on the Lake Erie central basin. Our review further revealed that this does not characterize the breadth of hypoxic phenomena that occur throughout the Great Lakes region. We then utilized a long-term monitoring dataset provided by the U.S. Environmental Protection Agency Great Lakes National Program Office to quantify the impact of Lake Erie central basin hypoxia on habitat quality of several fish species. We found that bioenergetics-based growth-rate potential models have a potential application as the framework for the development of biological endpoints that measure the effects of hypoxia on aquatic biota. Finally, we utilized stable isotope analysis to look for broad spatial and temporal trends in resource utilization within distinct regions of the Lake Erie central basin, with hypoxia and large-scale hydrodynamic patterns serving as potential driving patterns for spatial differences.
Additional file 1 of Preoperative CT-based radiomics combined with tumour spread through air spaces can accurately predict early recurrence of stage I lung adenocarcinoma: a multicentre retrospective cohort study
Creators: name: Wang, Yuhang
name: Ding, Yun
name: Liu, Xin
name: Li, Xin
name: Jia, Xiaoteng
name: Li, Jiuzhen
name: Zhang, Han
name: Song, Zhenchun
name: Xu, Meilin
name: Ren, Jie
name: Sun, Daqiang
Publisher: name: figshare
Year: 2024
Subjects: Space Science
Medicine
Biological Sciences not elsewhere classified
Developmental Biology
Science Policy

description: Additional file 1: Supplementary figure 1. The final features in the six signature models selected by LASSO-COX regression. Supplementary figure 2. The nomogram obtained by visualizing RAISm. Supplementary figure 3. The RQS score of RAISm.
Understanding the Experiences of Black College Students in the Current Era
Creators: name: Sinclair, Ife K
Publisher: name: Purdue University Graduate School
Year: 2021
Subjects: Counselling psychology
Health psychology

description: Mental health concerns of college students are important due to their developmental and life stages and adjustment challenges they must navigate in a new and difficult environment. Compared to students of other ethnicities, Black college students in the United States have historically reported poorer mental health outcomes with higher risk for depression and anxiety than their non-Black counterparts (McClain et al., 2016; Mushonga & Henneberger, 2019). The African American activism work done by Black college students has become increasingly visible and influential since the creation of the Black Lives Matter (BLM) movement and student protests aimed at improving university climates for minority students. Using Critical Race Theory (CRT) as a framework, this study investigated the roles of racial identity attitudes and sociopolitical attitudes on the relationships between race-related stress and mental health, and race-related stress and African American activism for Black college students in the U.S. The results indicated that increased race-related stress was associated with worsened mental health outcomes but increased engagement in activism, negative sociopolitical attitudes were related to poorer mental health, positive sociopolitical attitudes were related to decreased activism, and the six racial identity attitudes varied in their associations to mental health and activism based on racial centrality. The Internalization Multiculturalist Inclusive racial identity attitude was found to moderate the relationship between race-related stress and an indicator of mental health, and the Internalization Afrocentricity identity attitude strengthened the relationship between race-related stress and activism. The discussion addresses implications for future counseling psychology research and practice.
Additional file 1 of Transcriptional and metabolic profiling of sulfur starvation response in two monocots
Creators: name: Zenzen, Ivan
name: Cassol, Daniela
name: Westhoff, Philipp
name: Kopriva, Stanislav
name: Ristova, Daniela
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 1: Supplemental Figure 1. Sulfur deficiency in O. sativa and S. viridis. Supplemental Figure 2. Comparison of transcript levels under S deficiency as determined by RNA-Seq and RT-qPCR. Supplemental Figure 3. Mapman overview of DEGs in metabolic pathways in O. sativa and S. viridis under S-deficiency. Supplemental Figure 4. Pathway analysis of DEGs under S-deficiency in O. sativa and S. viridis. Supplemental Figure 5. Functional GO biological enrichment analysis in shoots and roots of O. sativa under S deficiency. Supplemental Figure 6. Functional GO biological enrichment analysis in shoots and roots of S. viridis under S deficiency. Supplemental Figure 7. Intersect of enrichment of GO biological terms in shoots and roots of O. sativa and S. viridis under S deficiency [68]. Supplemental Figure 8. Network analysis of the DEGs and metabolites in O. sativa and S. viridis under S-deficiency.
sj-docx-1-jic-10.1177_08850666211032610 - Supplemental material for Delirium and Long-Term Outcomes among Survivors of Extracorporeal Membrane Oxygenation Therapy: A Nationwide Cohort Study in South Korea
Creators: name: Oh, Tak Kyu
name: Park, Hye Yoon
name: Song, In-Ae
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 110305 Emergency Medicine
subject: FOS: Clinical medicine
subject: 111702 Aged Health Care
subject: FOS: Health sciences
subject: 110203 Respiratory Diseases

description: Supplemental material, sj-docx-1-jic-10.1177_08850666211032610 for Delirium and Long-Term Outcomes among Survivors of Extracorporeal Membrane Oxygenation Therapy: A Nationwide Cohort Study in South Korea by Tak Kyu Oh, Hye Yoon Park and In-Ae Song in Journal of Intensive Care Medicine
sj-doc-2-joo-10.1177_14653125211048202 – Supplemental material for The effectiveness of interventions to increase patient involvement in decision-making in orthodontics: A systematic review
Creators: name: Shelswell, Jonathan
name: Patel, Veena Abigale
name: Barber, Sophy
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 110599 Dentistry not elsewhere classified
subject: FOS: Clinical medicine

description: Supplemental material, sj-doc-2-joo-10.1177_14653125211048202 for The effectiveness of interventions to increase patient involvement in decision-making in orthodontics: A systematic review by Jonathan Shelswell, Veena Abigale Patel and Sophy Barber in Journal of Orthodontics
Natural Air Circulation Model Development for The DigIndy Tunnel
Creators: name: Maldonado Jaime, Luis C.
Publisher: name: Purdue University Graduate School
Year: 2021
Subjects: Computational methods in fluid flow, heat and mass transfer (incl. computational fluid dynamics)

description: The DigIndy tunnel is an extension of the Indianapolis combined sewer system that stores the combined sewer overflow during heavy rain conditions. The tunnel system has several openings in and around the city of Indianapolis. Gasses emitted from the tunnel may create health concerns and affect the quality of life for nearby residents. Understanding the air circulation patterns provides valuable insight into where gases are likely to emerge from the tunnel and what steps may be taken to mitigate gas emissions in undesirable locations. The objective of the present work is to develop a computational fluid dynamics (CFD) model capable of predicting the air circulation patterns in the DigIndy tunnel under dry weather conditions. In order to inform and validate the CFD model, an experimental campaign was designed and executed to measure weather data and air flow rates within the DigIndy tunnel. Obtaining accurate results requires careful consideration of key physical phenomena to include in the model, geometric simplification strategies, mesh generation strategies, and numerical modeling strategies. Results showed that the seasonal effect, manifest by thermally-driven flow, plays a significant role in the air circulation patterns within the tunnel. Furthermore, results show that tunnel alignment affects the natural air circulation within the tunnel. Large diameter shafts, as the working and retrieval shafts, lead to significant circulation rates in the new tunnel alignments.
Developmental signaling pathways in adult energy homeostasis
Creators: name: Antonellis, Patrick Joseph
Publisher: name: Purdue University Graduate School
Year: 2021
Subjects: Animal neurobiology

description: Many signaling pathways which are classically understood for their roles in early development are also known to be involved in tissue maintenance and adult energy homeostasis. Furthermore, dysfunction of these signaling pathways results in human diseases such as cancer. An in depth understanding of how developmentally important signaling pathways function in the adult will provide mechanistic insights into disease and potential new therapeutic targets. Herein Chapter 1, the Wnt, fibroblast growth factor (FGF), and Hedgehog (Hh) signaling pathways are discussed and examples of their relevance in development, adult homeostasis, and disease are provided. Wnt signaling provides an example of this concept as it has well described roles during both development and adult metabolism.
 Work included in Chapter 2, investigates the regulation of adult energy homeostasis by a member of the endocrine FGF family, FGF19. The three endocrine FGFs, FGF19 (FGF15 in mice), FGF21, and FGF23 have well described roles in the regulation of metabolic processes in adults. While FGF23 is primarily involved in the regulation of phosphate and vitamin D homeostasis,FGF19 and FGF21 have shown similar pharmacological effects on whole body metabolism. Here, the importance of adaptive thermogenesis for the pharmacological action of FGF19 is explored. UsingUCP1KO animals we show that whole-body thermogenesis is dispensable for body weight loss following FGF19 treatment.

Finally, the potential involvement of Hh signaling in mediating the hyperphagia driven obesity observed in certain ciliopathies is explored in Chapter 3. Emerging evidence suggests cilia play an important role in the regulation of feeding behavior. In mammals, the hedgehog pathway is dependent on the primary cilium as an organizing center and defects in hedgehog signaling share some clinical symptoms of ciliopathies. Here, we characterized the expression of core pathway components in the adult hypothalamus. We show that neurons within specific nuclei important for regulation of feeding behavior express Hh ligand and members of its signaling pathway. We also demonstrate that the Hh pathway is transcriptionally upregulated in response to an overnight fast. This work provides an important foundation for understanding the functional role of Hh signaling in regulation of energy homeostasis. In its entirety, this work highlights the emerging clinical relevance of developmentally critical pathways in diseases associated with dysfunction of adult tissue homeostasis, such as obesity.
Report On Existing Metadata Standards, And Proposals For New Vocabularies
Creators: name: Morris, Chris
Publisher: name: Zenodo
Year: 2018
Subjects: Structural biology
metadata
virtual research environment

description: Structural biology has a long tradition of open data, notably through depositing structures in the Protein Data Bank. Nevertheless there are challenges to transition to full compliance with the FAIR principles. As reported in M6.3:

	Current workflows in Structural Biology may not be properly described in an unambiguous manner due to the lack of appropriate metadata standards specifying them (M6.3 report).
	There is no agreed ontology for the primary data processing, either at the level of integrated studies combining different technologies or even at the single technique level (M6.3 report).
	Metadata about experimental conditions are often incomplete
	As a result of this, the chain of custody from sample to publication is often broken at several points

This report describes progress on these issues:

	Extensions to the mmCIF data standard and increasing use of it,
	… particularly for hybrid and integrative models,
	Recording provenance
	Linking datasets to research projects
	Adoption of CWL for describing workflows
	Metadata support in West-Life software

The pressing needs that we found were not for novel metadata vocabularies, but for take up of existing ones. This report therefore plans practical steps to deliver improvements during remaining months of West-Life, and steps to enable future culture changes and implementation.
Electrochemical Tape-and-Paper-Based pH Sensors Suitable for Oral pH Measurements
Creators: name: Cherebin, Oreoluwa
Publisher: name: Purdue University Graduate School
Year: 2021
Subjects: Electroanalytical chemistry
Electrochemistry
Analytical chemistry not elsewhere classified

description: Low oral pH (<5.5) has been shown to play an important role in dental erosion. The measurement of oral pH can be useful in preventative care, in aiding the dental caregiver in determining the likeliness of future dental cavities. The measurement of oral pH has become a popular area of research in an effort to develop a more quantitative method for the diagnosis of dental caries. We are developing an electrochemical tape-and-paper-based pH sensor for future applications in oral pH measurements. These devices are low-cost, easy to fabricate, sterilizable, disposable and portable. The presence of intrinsic material defects of the painted graphite electrode generates oxo-groups which are electroactive. Some of these electroactive species, such as quinone, are pH-dependent and allow for the measurement of pH using cyclic voltammetry. There is shift in the potential of the redox peaks corresponding to the sensing species that can be correlated with the pH of a sample. We optimized the assay and characterized the devices in different buffer solutions, as well as commercial pH standards to establish calibration curves. The devices are reproducible across multiple devices and users. Their shelf-life was demonstrated to be at least three months. The devices successfully measured the pH of beverage and mouthwash, and different formulations of artificial saliva. Their performance in the presence bacteria and in growth media was assessed. Some complex matrices such as growth media required some additional optimization. Towards this objective we fabricated and tested devices with various formulations of carbon paste for the painted working electrode. These flexible tape-and-paper-based devices are promising sensors for pH measurements in oral samples and potentially even for in vivo and in situ pH measurements.
title: Frequency selective illumination for high aperture coherence scanning interferometry
Creators: name: Künne, Marco
name: Stelter, Andre
name: Pahl, Tobias
name: Lehmann, Peter
Publisher: name: KOBRA Universität Kassel
Year: 2024
Subjects: subject: interference microscopy
subject: coherence scanning interferometry
subject: annular apertures
subject: NA effect
classificationCode: 620
subject: 620
classificationCode: 530
subject: 530
classificationCode: Interferenzmikroskopie
subject: Interferenzmikroskopie
classificationCode: Interferometrie
subject: Interferometrie
classificationCode: Apertur
subject: Apertur
classificationCode: Numerische Apertur
subject: Numerische Apertur

description:
Coherence scanning interferometry is a widely used optical topography measurement technique, which can achieve axial resolutions in the sub-nanometer regime. Nevertheless, in the lateral dimension it is inherently diffraction limited and multiple problems arise when approaching this limit. Especially for challenging surface topographies like steep slopes or small grating periods measurement artifacts start to cause massive deviations in the 3D reconstruction of the surface due to the increased influence of noise on increasingly weak signals. In this study we present an illumination approach for Linnik-type CSI, which highlights oblique incident angles of the illuminating light cone in high numerical aperture (0.95) systems. It is demonstrated, that this approach can significantly improve the signal-to-noise ratio for measurements at steep surface slopes and therefore increase the subsequent surface reconstruction.
Anthropogenic disturbances shape soil nematode communities in urban green spaces
Creators: name: xu, weichao
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 310302
subject: Community ecology (excl. invasive species ecology)
classificationCode: 379999
subject: Other earth sciences not elsewhere classified

description: Increasing urbanization contributes to the fragmentation and pollution of natural habitats. However, urban green space does not only play ornamental and recreational roles but also provides ecological functions such as the conservation of soil biodiversity. Nematodes occupy a variety of trophic levels and play multiple roles in the soil food web, making them critical to soil ecosystem functioning and then the sustainable development of urban green spaces. In this study, individual density, richness, functional guilds, metabolic footprints, and the distribution of soil nematode communities were investigated to explore the effects of mowing and trampling on such communities. In urban green space habitats, the abundance and richness of soil nematode communities decreased along the disturbance gradient. Specifically, all functional guilds of soil nematodes had the lowest abundances in urban green space habitats with the highest disturbance, whereas the decline of omnivores and predators (OP) with K-strategy was more severe than that of nematodes with r-strategy. The maturity index (MI), the structure index (SI), and the carbon metabolic footprint values of soil nematode communities in the less disturbed habitats were higher, which implies a more stable and complex soil food web. Compared to regular mowing, trampling in recreational lawns had more serious impacts on soil nematodes. Soil water content, soil bulk density, plant coverage, and available nutrients, highly susceptible to human trampling, were the primary drivers for the observed pattern of soil nematode communities. Based on our results, a lower mowing frequency, rotational resting periods, the proper retention of plant litter, and the timely recultivation of exposed soil patches are suggested to improve the soil biodiversity conservation and the health of the soil micro-food web in urban green spaces.
IMPACT OF HEAT THERAPY ON SKELETAL MUSCLE FUNCTION IN A MODEL OF DUCHENNE MUSCULAR DYSTROPHY
Creators: name: Ro, Bohyun
Publisher: name: Purdue University Graduate School
Year: 2021
Subjects: Exercise physiology

description: Current study demonstrated the impact of heat therapy on skeletal muscle function in a model of Duchenne muscular dystrophy (DMD). The aim of this study was to: (1) examine the impact of treatment temperature on the skeletal muscle adaptation in DBA/2J mice; and (2) determine the impact of repeated HT for 3 consecutive weeks on body composition and skeletal muscle function in D2.mdx, a model of DMD. From study 1, we revealed that HT at 39℃ for 3 weeks significantly promoted relative muscle mass of both EDL and soleus muscle in DBA/2J mice. However, from study 2, HT at 39℃ for 3 weeks does not improve muscle function or increase muscle mass in a mouse model of DMD.
Additional file 2 of Exposure to oxLDL impairs TGF-β activity in human tendon cells
Creators: name: Mousavizadeh, Rouhollah
name: Waugh, Charlie M.
name: DeBruin, Erin
name: McCormack, Robert G.
name: Duronio, Vincent
name: Scott, Alex
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Supplementary Material 2
Smart Sensing System for a Lateral Micro Drilling Robot
Creators: name: Solorio Cervantes, Jose A.
Publisher: name: Purdue University Graduate School
Year: 2021
Subjects: Automation engineering
Control engineering
Circuits and systems
Control engineering, mechatronics and robotics not elsewhere classified
Engineering instrumentation
Industrial electronics
Petroleum and reservoir engineering
Signal processing

description: The oil and gas industry faces a lack of compact drilling devices capable of performing horizontal drilling maneuvers in depleted or abandoned wells in order to enhance oil recovery. The purpose of this project was to design and develop a smart sensing system that can be later implemented in compact drilling devices used to perform horizontal drilling to enhance oil recovery in wells. A smart sensor is the combination of a sensing element (sensor) and a microprocessor. Hence, a smart sensing system is an arrangement that consists of different sensors, where one or more have smart capabilities. The sensing system was built and tested in a laboratory setting. For this, a test bench was used as a case study to simulate the operation from a micro-drilling device. The smart sensing system integrated the sensors essential for the direct operational measurements required for the robot. The focus was on selecting reliable and sturdy components that can handle the operation Down the Hole (DTH) on the final lateral micro-drilling robot. The sensing system's recorded data was sent to a microcontroller, where it was processed and then presented visually to the operator through a User Interface (UI) developed in a cloud-based framework. The information was filtered, processed, and sent to a controller that executed commands and sent signals to the test bench’s actuators. The smart sensing system included novel modules and sensors suitable for the operation in a harsh environment such as the one faced in the drilling process. Furthermore, it was designed as an independent, flexible module that can be implemented in test benches with different settings and early robotic prototypes. The outcome of this project was a sensing system able to provide robotic drilling devices with flexibility while providing accurate and reliable measurements during their operation.
Comparison of AERMOD Performanceusing Observed and Prognostic Meteorological Data
Creators: name: Wissawa Malakan
name: Jutarat Keawboonchu
name: Sarawut Thepanondh
Publisher: name: The Thai Society of Higher Education Institutes on Environment
Year: 2018
Subjects: AERMOD
Maptaphut industrial area
Prognostic meteorological simulations
SO2

description: EnvironmentAsia, 11, 2, 38-52
Airborne Bacteria and Fungi Distribution Characteristics in NaturalVentilation System of a University Hospital in Thailand
Creators: name: Pawit Chaivisit
name: Ang?Lique Fontana
name: Galindo, Sabine
name: Strub, Caroline
name: Thitiworn Choosong
name: Duangporn Kantachote
name: Thunwadee Tachapattaworakul Suksaroj
Publisher: name: The Thai Society of Higher Education Institutes on Environment
Year: 2018
Subjects: Indoor air quality
Bioaerosol
Size distribution
Natural ventilation
Hospital

description: EnvironmentAsia, 11, 2, 53-66
A SEQUENTIAL APPROACH FOR ACHIEVING SEPARATE SENSIBLE AND LATENT COOLING
Creators: name: Ma, Jie
Publisher: name: Purdue University Graduate School
Year: 2021
Subjects: Architectural science and technology
Building science, technologies and systems
Civil engineering not elsewhere classified

description: Current air conditioning systems generally operate with a relatively fixed moisture removal capacity, and indoor humidity conditions are usually not actively controlled in most buildings. If we focus only on sensible heat removal, an air conditioning system could operate with a fairly high evaporating temperature, and consequently a high coefficient of performance (COP). However, to provide an acceptable level of dehumidification, air conditioners typically operate with a much lower evaporating temperature (and lower COP) to ensure that the air is cooled below its dew point to achieve dehumidification. The latent (moisture related) loads in a space typically only represent around 20-30% of the total load in many environments; however, the air conditioning system operates 100% of the time at a low COP to address this small fraction of the load. To address issues associated with inadequate dehumidification and high energy consumption of conventional air conditioning systems, the use of a separate sensible and latent cooling (SSLC) system can dramatically increase system COP and provide active humidity control. Most current SSLC approaches that are reported in the literature require the installation of multiple components or systems in addition to a conventional air conditioner to separately address the sensible and latent loads. This approach increases the overall system installation and maintenance costs and complicates the controller design. A sequential SSLC system is proposed and described in this work takes full advantage of readily available variable speed technology and utilizes independent speed control of both the compressor and evaporator fan, so that a single direct expansion (DX) air-conditioning (A/C) system can be operated in such a way to separately address the sensible and latent loads in a highly efficient manner. In this work, a numerical model of DX A/C system is developed and validated through experiential testing to predict the performance under varied equipment speeds and then used to investigate the energy saving potential with the implementation of the proposed sequential SSLC system. To realize the sequential SSLC system approach, various corresponding control strategies are proposed and explained in this work that minimizes energy consumption while provides active control over both space temperature and relative humidity. At the end of this document, the benefits of applying the SSLC system in a prototype residential building under different typical climate characteristics are demonstrated.