cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Canopy structure and radiation regime in grapevine. 2. Modeling radiation interception and distribution inside the canopy
Creators: name: Mabrouk, H.
name: Sinoquet, H.
name: Carbonneau, A.
Publisher: name: VITIS - Journal of Grapevine Research
Year: 2015

description: A 3D version of the radiation model of SINOQUET and BONHOMME (1992) was used to simulate the light microclimate of grapevine. It was tested against measurements of radiation interception and distribution within two canopy systems (Open Lyre and Geneva Double Curtain) exhibiting different vigor levels. The agreement between the model and the measurements was generally good. Discrepancies may have arisen from incorrect assumptions concerning leaf azimuth distribution and leaf dispersion as well as a lack of accuracy in the description of the distribution of leaf area density inside the canopy. The model also permitted to assess light partitioning between main and lateral shoot leaves which can influence global canopy photosynthesis and berry ripening. As an example of application, the model was used to evaluate the consequences of lateral leaf removing on the interception efficiency of the canopy and the light environment of the fruit zone. The possible use of a geometrical approach to simulate the radiation interception at the canopy scale was also discussed.
description: VITIS - Journal of Grapevine Research, Vol. 36 No. 3 (1997): Vitis
Characterization of RAPD markers in Vitis
Creators: name: Lodhi, M. A.
name: Weeden, N. F.
name: Reisch, B. I.
Publisher: name: VITIS - Journal of Grapevine Research
Year: 2015

description: A study was initiated to investigate the possibility of using RAPD markers in related populations of Vitis. We also sought to design primers that could amplify translation initiation sites (Kozak sequence) as a mean to maximize the production of RAPD markers from single copy DNA sequences in the genome. RAPD bands were labeled and used as probes on blots with either genomic DNA or RAPD products from cvs Aurore, Cayuga White, Horizon and Illinois 547-1. Reamplification of excised RAPD products produced either several bands of smaller size, a single band of smaller size or a single band of the same size as the original band. Among 16 probes hybridized to genomic DNA blots, three probes, including one from the Kozak primer amplification, hybridized to 1-2 bands, 5 probes hybridized to 3-8 bands and 8, including two from a Kozak primer reaction, to more than 10 bands on the genomic DNA blots. Twelve RAPD bands were also probed on RAPD blots derived from the RAPD reaction that produced each probe. Three of those probes hybridized to 1-2 bands, 8 hybridized to 3-8 and one hybridized to more than 10 bands indicating the presence of probe sequences in more than one RAPD band as amplified with the same primers. This result and the observations on reamplification of RAPD bands support the hypothesis that some of the longer RAPD fragments harbor internal priming sites that are either not amplified unless the reaction mixture is saturated with longer other primers indicating amplification from the same sequence but different sized repetitive DNA. RAPD reactions were also run with 16 primers on parental DNA of 2 crosses used in genetic mapping (Cayuga White x Aurore and Horizon x Illinois 547-1). These reactions rated 140 bands; 100 bands were shared by both populations, including 47 polymorphic bands. Ten polymorphic bands in Cayuga White x Aurore and 22 in Horizon x Illinois 547-1 were population specific. The RAPD analysis as well as hybridization of RAPD markers to the genomic blots suggest that linkage analysis could be used in related segregating populations with carefully chosen markers. Tagging single copy regions with Kozak-sequence-derived primers may be possible, but the low number of probes tested and lack of DNA sequence information prevents any definite conclusions.
description: VITIS - Journal of Grapevine Research, Vol. 36 No. 3 (1997): Vitis
Detection of genetic diversity among clones of cv. Fortana (Vitis vinifera L.) by microsatellite DNA polymorphism analysis
Creators: name: Silvestroni, Oriana
name: Di Pietro, Donatella
name: Intrieri, C.
name: Vignani, Rita
name: Filipetti, Ilaria
name: Del Casino, Cecilia
name: Scali, Monica
name: Cresti, M.
Publisher: name: VITIS - Journal of Grapevine Research
Year: 2015

description: Allelic polymorphism at 6 microsatellite loci was analyzed in 5 clones of cv. Fortana, which had been divided into two morphological groups (CAB 2, CAB 13, CAB 14, and CAB 1, CAB 3, respectively) by discriminant multivariate analysis of leaf traits. Of the 6 microsatellite loci, 5 (VVS1, VVS2, VVS4, VVMD3, VVMD6) showed polymorphism between clones and one (VVMD7) gave identical DNA profiles. Two genotypic patterns were found: clones CAB 2: CAB 13 and CAB 14 appeared identical and distinct from clones CAB 1 and CAB 3, but all of them shared at least one of the two alleles for each locus, thus showing a certain degree of genetic relatedness. The slight morphological differences of the two Fortana clone groups could thus be related to the diversity of their genotypic profiles. Thus, the two clone groups may have originated not via vegetative propagation of a single individual but from seedlings, parents or siblings of this progenitor. The present investigation supports the assumptions of the polyclonal origin of cv. Fortana and concludes that the strict definition of cultivar, which admits of clonal origin only, is not altogether adequate for the old varieties of unknown origin. The Italian term ''vitigno'' and the French ''cepage'', which do not imply genetic uniformity, would appear more appropriate than cultivar to indicate a winegrape variety.
description: VITIS - Journal of Grapevine Research, Vol. 36 No. 3 (1997): Vitis
Use of large language models to optimize poison center charting
Creators: name: Matsler, Nikolaus
name: Pepin, Lesley
name: Banerji, Shireen
name: Hoyte, Christopher
name: Heard, Kennon
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified

description: Efficient and complete medical charting is essential for patient care and research purposes. In this study, we sought to determine if Chat Generative Pre-Trained Transformer could generate cogent, suitable charts from recorded, real-world poison center calls and abstract and tabulate data. De-identified transcripts of real-world hospital-initiated poison center consults were summarized by Chat Generative Pre-Trained Transformer 4.0. Additionally, Chat Generative Pre-Trained Transformer organized tables for data points, including vital signs, test results, therapies, and recommendations. Seven trained reviewers, including certified specialists in poison information and board-certified medical toxicologists, graded summaries using a 1 to 5 scale to determine appropriateness for entry into the medical record. Intra-rater reliability was calculated. Tabulated data was quantitatively evaluated for accuracy. Finally, reviewers selected preferred documentation: original or Chat Generative Pre-Trained Transformer organized. Eighty percent of summaries had a median score high enough to be deemed appropriate for entry into the medical record. In three duplicate cases, reviewers did change scores, leading to moderate intra-rater reliability (kappa = 0.6). Among all cases, 91 percent of data points were correctly abstracted into table format. By utilizing a large language model with a unified prompt, charts can be generated directly from conversations in seconds without the need for additional training. Charts generated by Chat Generative Pre-Trained Transformer were preferred over extant charts, even when they were deemed unacceptable for entry into the medical record prior to the correction of errors. However, there were several limitations to our study, including poor intra-rater-reliability and a limited number of cases examined. In this study, we demonstrate that large language models can generate coherent summaries of real-world poison center calls that are often acceptable for entry to the medical record as is. When errors were present, these were often fixed with the addition or deletion of a word or phrase, presenting an enormous opportunity for efficiency gains. Our future work will focus on implementing this process in a prospective fashion.
A REVIEW OF THE TWO-TIERED 1RB REVIEW SYSTEM FOR DOD SPONSORED, FEDERALLY FUNDED RESEARCH: ARE TWO TIERS ONE TIER TOO MANY?
Creators: name: Mantine, Kathie R. Ph.
Publisher: name: Maryland Shared Open Access Repository
Year: 2003

description: Essential to the conduct of research is the protection of the research participant. Beginning with the Nuremberg Code, regulations have been created for just this purpose. These regulations require that federally funded research involving the use of human subjects be reviewed on a local level by an institutional review board (IRB). Some of the human subjects research that is sponsored by the Department of Defense (DoD) and funded by the U. S. Army Medical Research and Materiel Command is required to undergo a second level of review by The Surgeon General's Human Subjects Research Review Board (HSRRB). This second level review adds additional time onto the approval cycle before research can be implemented. Some researchers feel that this second level review is unnecessary as the current regulations and local Institutional Review Boards (IRB) provide adequate protection for the research subject. The objective of this project is to attempt to address this concern of the research community. To meet this objective, a subset of locally approved greater than minimal risk (GTMR) protocols submitted for second level review by the U.S. Army Surgeon General's HSRRB during 1999, 2000, and 2001 was assessed for compliance with Federal human subject protection regulations, 45 CFR 46, 32 CFR 219, 21 CFR 50 and 56. Following this compliance review, the minutes from the review conducted by the HSRRB were examined to determine the deficiencies, if any, that were identified during the second level review.
Evaluation of resistance to grapevine powdery mildew (Uncinula necator [Schw.] Burr., anamorph Oidium tuckeri Berk.) in accessions of Vitis species
Creators: name: Staudt, G.
Publisher: name: VITIS - Journal of Grapevine Research
Year: 2015

description: 119 accessions, including species from America and Asia, various hybrids and breeding stocks, were tested for resistance to powdery mildew (Uncinula necator) by a leaf disc test. Vitis candicans, V. munsoniana, V. piasezkii and V. rotundifolia were found to be resistant with a rating of up to 1.4 in all accessions (1-no infection, 9-very strong infection). V. munsoniana and V. rotundifolia showed extremely high resistance and may be excellent material for breeding programs. However, the accessions of V. candicans and V. pinsezkii should be preferred for breeding of powdery mildew resistant grapevine Varieties because of the corresponding chromosome number. The surprisingly high number of 10 species included resistant as well as susceptible accessions. V. doaniana and V. tiliaefolia, probably V. palmata and most of the accessions of V. shuttleworthii may be characterized as moderately resistant. V. cordifolia, V. lanata, V. rupestris and some accessions of V. vulpina and cultivars of V. vinifera proved to be highly susceptible.
description: VITIS - Journal of Grapevine Research, Vol. 36 No. 3 (1997): Vitis
Canopy structure and radiation regime in grapevine. 1. Spatial and angular distribution of leaf area in two canopy systems
Creators: name: Mabrouk, H.
name: Carbonneau, A.
name: Sinoquet, H.
Publisher: name: VITIS - Journal of Grapevine Research
Year: 2015

description: Grapevine canopies are discontinuous and spatially heterogeneous. Thus, their geometrical structure is difficult to characterize. A method based on a three-dimensional discretion of the volume occupied by foliage elements was used to assess spatial and angular distribution of leaf area. The method was applied to two canopy systems (Open Lyre and Geneva Double Curtain) exhibiting different vigor levels. Leaf area density (LAD, m2·m-3), leaf inclination and leaf azimuth distributions were presented for the canopy systems, as are the distributions of lateral shoot leaves within the canopy. An attempt was made to determine the consequences of the canopy system on the grapevine canopy structure. The canopy structure parameters determined in this study were used in a companion paper as input parameters for a radiation model to describe the grapevine light microclimate.
description: VITIS - Journal of Grapevine Research, Vol. 36 No. 3 (1997): Vitis
Sitophagus uniformis Doyen 1988
Creators: name: Pérez-Hernández, Cisteil Xinum
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Tenebrionidae
Sitophagus
Sitophagus uniformis

description: - Sitophagus uniformis Doyen, 1988
Paratypes: 2 [unknown sex]. MEXICO: Oaxaca, Tehuantepec, 56 mi NW, 27/VII/1963. Col. J. Doyen. Conservation status: Complete, well-preserved.
description: Published as part of Pérez-Hernández, Cisteil Xinum, 2017, An annotated catalogue of the Coleoptera types deposited in the National Insect Collection (CNIN) of the National Autonomous University of Mexico, pp. 1-128 in Zootaxa 4288 (1) on page 114, DOI: 10.11646/zootaxa.4288.1.1, http://zenodo.org/record/1010410
In vitro germination of stenospermic seeds from reciprocal crosses (Vitis vinifera L.) applying different techniques
Creators: name: Valdez, J. G.
name: Ulanovsky, Silvia M.
Publisher: name: VITIS - Journal of Grapevine Research
Year: 2015

description: The frequency of germination of stenospermic seeds cultured in vitro is analysed for two crosses of seedless varieties (Vitis vinifera L.) and their reciprocals. In the case of Superior x Dawn (SxD) the frequency of germination was not different to that of Superior x Ruby (SxR). Results of the reciprocal cross (SxD, DxS) show significantly better results with SxD. In the reciprocal cross SxR and RxS direct germination (DG) is compared with embryo excision (EE) and seed coat rupture (SCR). The majority of embryos of varieties with very soft seed coats, e.g. Superior, germinate directly: 18.8 % in DG, 18.4 % in EE and 23.2 % in SCR. Germination of varieties with harder seed coats (Ruby) could be mechanically affected: 17.6 % in DG, 62.4 % in EE and 58.8 % in SCR. There is no significant difference between EE and SCR. The results of SCR confirm that there is no inhibition of in vitro germination by chemical inhibitors in the seed tissues. The results of CR and EE for SxR and RxS show a greater capacity of Ruby to generate viable embryos.
description: VITIS - Journal of Grapevine Research, Vol. 36 No. 3 (1997): Vitis
Characterisation of overturning flow in a precessing cylinder
Creators: name: Albrecht, T.
name: Meunier, P.
name: Manasseh, Richard
name: Lopez, J. M.
name: Blackburn, H. M.
Publisher: name: Swinburne
Year: 2024

description: Experiments of the flow in precessing containers have repeatedly shown a rapid breakdown to turbulence, which remains unexplained to date. We present direct numerical simulations closely modelled after the experiments of Manasseh (JFM 243, 1992). Despite the four times lower Reynolds number of 4780, we still observe a transition with the same characteristics as in the experiment. Analysis of the flow state preceding the breakdown shows a relatively clean and simple overturning flow, and a strong azimuthal mean flow. Contrary to observations by Manasseh, we find no flow reversals before or during the breakdown.
Influence of shoot number and crop load on potted Chambourcin grapevines. 2. Whole-vine vs. single-leaf photosynthesis
Creators: name: Miller, D. P.
name: Howell, G. S.
name: Flore, J. A.
Publisher: name: VITIS - Journal of Grapevine Research
Year: 2015

description: Two-year-old potted Chambourcin grapevines were trained to one shoot with 0 or 1 cluster (1/0 and 1/1 respectively) or four shoots with 0 or 4 clusters (4/0 and 4/4 respectively) to determine the effects of canopy development rate, canopy morphology, and crop load on whole-vine photosynthesis. Significant differences in canopy development rate, canopy morphology and dry matter partitioning occurred among treatments but whole-vine net photosynthesis (Pn) and dry matter production were not affected. Photosynthetic compensation by leaves of severely pruned vines enabled them to produce quantities of dry matter similar to vines with greater leaf area. Vines bearing crop supported the development of berries by partitioning carbohydrate to fruit at the expense of vegetative tissues so overall vine dry weight was not different among cropped and non-cropped treatments. Whole-vine Pn determinations were linearly related to vine dry mass. By contrast, single leaf measurements used to estimate whole-vine Pn were not related to dry mass. If a similar relationship can be demonstrated in field vines, it may be possible to quantify the influence of biotic and abiotic stresses on vine biomass production and subsequent yields.
description: VITIS - Journal of Grapevine Research, Vol. 36 No. 3 (1997): Vitis
CLONING AND EXPRESSION ANALYSIS OF THE GLUTAMINE SYNTHETASE GENE OF THE SEA ANEMONE AIPTASIA PALLIDA
Creators: name: Marinov, Anthony D.
Publisher: name: Maryland Shared Open Access Repository
Year: 2003

description: The association between the sea anemone Aiptasia pallida and its zooxanthellae algae enables the symbiosis to flourish in tropical nutrient-poor seas. The presence of symbiotic algae can alter the biochemical dynamics of cnidarian host. Previous studies have found that anemones containing algae (zooxanthellate anemones) not fed for two weeks, exhibit elevated glutamine synthetase (GS) activity relative to anemones without algae (aposymbiotic anemones) not fed for two weeks. It has been suggested that the activity of anemone GS plays a key role in controlling the growth of endosymbionts by limiting the amount of nitrogen available to the algae. Further studies were performed to determine if increased GS activity is correlated with increased GS mRNA steady-state levels. To examine this, the GS cDNA was cloned and the sequencing information was used to develop a semi-quantitative RT-PCR to measure GS mRNA steady-state levels between starved zooxanthellate anemones and fed aposymbiotic anemones. Sequence analysis revealed that the cloned GS cDNA is about 1600 bp in length and the protein consists of 369 amino acids with a predicted molecular weight of 41.7 kDa. A northern blot specific for anemone GS mRNA detected the presence of a 1.6-kb GS transcript, which agrees with the size from the sequenced cDNA. A phylogenetic analysis of the amino acid sequence showed greater homology to animal GS relative to protist GS protein. The results of the semi-quantitative RT-PCR assay, normalized to 18S ribosomal RNA, showed that increased GS activity in the starved zooxanthellate anemones was not correlated with increased GS mRNA steady-state levels. Furthermore, the aposymbiotic anemones had higher GS mRNA steady-state levels than the zooxanthellate anemones. This indicates that increased GS enzyme activity is not associated with increased GS mRNA steady-state levels and that the presence of symbiotic algae may play a role in reducing GS mRNA steady-state levels in the host. Thus, the results suggest that GS enzyme activity is regulated by events that may occur at the level of protein synthesis, protein stability, or protein modifications.
Tópicos de inversão em geofísica
Creators: name: Vanderlei C. Oliveira Jr
name: Uieda, Leonardo
Publisher: name: figshare
Year: 2014
Subjects: subject: Geophysics
subject: FOS: Earth and related environmental sciences

description: Apostila para o curso "Tópicos de inversão em geofísica". Código Latex para gerar a apostila e apresentações do curso podem ser encontradas no endereço abaixo.
The Tanta University risk model could help identify patients with acute poisoning who would require intensive care unit level of care
Creators: name: Flack, Maria
name: Koop, Felix
name: Zellner, Tobias
name: Heier, Eva-Carina
name: Geith, Stefanie
name: Eyer, Florian
name: Rabe, Christian
name: Schmoll, Sabrina
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Medicine
subject: Neuroscience
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Science Policy
subject: Mental Health

description: To independently validate the negative predictive value of the Tanta University risk model for intensive care requirements in poison center telephone consultations with other physicians. This study included 400 consecutive patients with acute poisoning. Clinical and laboratory parameters were recorded during the initial consultation with the poison center. Patients who were already ventilated or on vasopressors at the time of consultation were excluded. The Tanta University risk model score was calculated from the data according to the following equation: Tanta University risk model score = 1.966*Glasgow Coma Scale + 0.329*oxygen saturation (percent) + 0.212*diastolic blood pressure (mmHg) − 0.27*respiratory rate (breaths/minute) + 0.33*standard bicarbonate (mmol/L). Twenty-four hours later, the patients’ courses were followed up by telephone. The Tanta University risk model was then compared to a composite endpoint indicating the requirement for admission to an intensive care unit (vasopressors, need for intubation, or death). Four hundred patients with acute poisoning were included. Thirty-seven patients had a complicated clinical course as defined by the composite endpoint. Receiver operating characteristic analysis revealed the area under the curve to be 0.87 (95 percent confidence interval 0.83–0.90). An unfavorable Tanta University risk model score was defined as less than 73.46, using a cut-off derived from a previous study of an unrelated series of patients with acute poisoning admitted to our service. Thirty-one of 37 patients with complicated courses had an unfavorable Tanta University risk model score compared to six patients with complicated courses among 306 patients with a favorable Tanta University risk model score (P < 0.0002, Fisher’s exact test). Sixty-three patients had an unfavorable Tanta University risk model score but an uneventful course. The negative predictive value of the Tanta University risk model was 0.98 (95 percent confidence interval 0.96–0.99), sensitivity was 0.84, and specificity 0.83. In the present study of poison center telephone consultations, the Tanta University risk model was significantly related to the outcomes in patients with acute poisoning. Patients with a favorable Tanta University risk model score (greater than or equal to 73.46) were unlikely to need intensive care unit level of care.
Constitutive stilbene contents of grapevine cluster stems as potential source of resveratrol in wine
Creators: name: Bavaresco, L.
name: Cantù, E.
name: Fregoni, M.
name: Trevisan, M.
Publisher: name: VITIS - Journal of Grapevine Research
Year: 2015

description: Ripe clusters of 8 Vitis vinifera L. varieties (Cabernet franc, Gewürztraminer, Marzemino, Merlot, Moscato, Pinot gris, Sauvignon, Tocai friulano) were analysed to determine the constitutional levels of trans- and cis-resveratrol, ε-viniferin and pterostilbene. Grape stems were extracted by an hydroalcoholic solution, in order to simulate the resveratrol extraction from stems that might occur during alcoholic fermentation, due to the presence of little pieces of stems in the fermenting must. The average stem concentrations of constitutive trans-, cis-resveratrol and ε-viniferin were 142, 0.30, and 70 mu g.g-1 FW, respectively; pterostilbene was not found. Varieties differed significantly in their stilbene content. The percentage of trans-resveratrol extracted from the stems by a hydroalcoholic solution varied from 2.5 % (Gewürztraminer) to 32.9 % (Marzemino), the contribution of the stems to the trans-resveratrol concentration of the hydroalcoholic solution being, on the average, 34 mu g.l-1.
description: VITIS - Journal of Grapevine Research, Vol. 36 No. 3 (1997): Vitis
Trichiasida lutulenta Doyen 1988
Creators: name: Pérez-Hernández, Cisteil Xinum
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Tenebrionidae
Trichiasida
Trichiasida lutulenta

description: - Trichiasida lutulenta Doyen, 1988
Paratypes: 2 [unknown sex]. MEXICO: Jalisco, Chamela, 30/XI–08/XII/1988. Col. Chemsak. Conservation status: Complete, well-preserved.
Additional notes: The current name of this species is Stenomorpha (Trichiasida) lutulenta (Doyen, 1988).
description: Published as part of Pérez-Hernández, Cisteil Xinum, 2017, An annotated catalogue of the Coleoptera types deposited in the National Insect Collection (CNIN) of the National Autonomous University of Mexico, pp. 1-128 in Zootaxa 4288 (1) on page 114, DOI: 10.11646/zootaxa.4288.1.1, http://zenodo.org/record/1010410
title: mergem: merging, comparing, and translating genome-scale metabolic models using universal identifiers
title: mergem: merging and comparing genome-scale metabolic models using universal identifiers
titleType: AlternativeTitle
Creators: name: Hari, Archana
name: Zarrabi, Arveen
name: Lobo, Daniel
Publisher: name: Oxford University Press
Year: 2024

description: Numerous methods exist to produce and refine genome-scale metabolic models. However, due to the use of incompatible identifier systems for metabolites and reactions, computing and visualizing the metabolic differences and similarities of such models is a current challenge. Furthermore, there is a lack of automated tools that can combine the strengths of multiple reconstruction pipelines into a curated single comprehensive model by merging different drafts, which possibly use incompatible namespaces. Here we present mergem, a novel method to compare, merge, and translate two or more metabolic models. Using a universal metabolic identifier mapping system constructed from multiple metabolic databases, mergem robustly can compare models from different pipelines, merge their common elements, and translate their identifiers to other database systems. mergem is implemented as a command line tool, a Python package, and on the web-application Fluxer, which allows simulating and visually comparing multiple models with different interactive flux graphs. The ability to merge, compare, and translate diverse genome scale metabolic models can facilitate the curation of comprehensive reconstructions and the discovery of unique and common metabolic features among different organisms.
Item 1: Introduction - Project description
Creators: name: Davidsen, Katrine Düring
Publisher: name: Zenodo
Year: 2020
Subjects: Open Science Skills
Open Science Capabilities
Open Science Competencies
Open Science support professionals
FAIR
Research Libraries
Data Management Plans
Research Data Management
Digital literacy
Further education
Competency model

description: Open Science is rapidly gaining more and more ground among academics. The need for training and education in Open Science and digital practices is growing among both researches and support staff. The future role of the research libraries depends on their ability to adapt the skills needed to support Open Science research activities. In order to provide Open Science services that support the university's mission with Open Science and also support library users in creating and sharing knowledge through open and fair processes, there is a need to invest in competence development at the library. Competences are the basis on which the research libraries can deliver, develop and organize their Open Science services now and in the future. This project was funded by Denmark’s Electronic Research Library (DEFF) with the aim to investigate, model, and deploy Open Science skills for Danish Research Librarians. The project provides an overview of Danish digital collections, with a focus on openness and applicability. Skills needed to: 1)access and harvest data, 2)to identify and guide in tools to build data corpus and 3) to analyze data, were considered. We also provide a general model of Open Science competencies and skills for research library staff, as well as a training catalog that sums up the current variety of training programs, eLearning etc. that is available. Both the competence matrix and the training catalogue can be used strategically when considering the library’s range of services, and in supporting library staff in their development of Open Science skills. File 1.1 Report [placeholder - to be published by project closure] Author: Katrine Düring Davidsen on behalf of project group File 1.2 Abstract for DI4R, September 2018 presenting the project.
 Authors: Mareike C. H. Buss, Katrine Flindt Holmstrand
 File 1.3 Poster: This poster was presented to DI4R September 2018
 Authors: Mareike C. H. Buss, Katrine Flindt Holmstrand
 Original DOI: http://doi.org/10.5281/zenodo.1478553
 DI¤R: https://indico.egi.eu/event/3973/contributions/9366/
Tree Species Diversity in Community Managed and National Park Forests in the Mid-Hills of Central Nepal
Creators: name: Pandey, Shiva Shankar
name: Tek Narayan Maraseni
name: Cockfield, Geoff
name: Gerhard, Karin
Publisher: name: Taylor & Francis
Year: 2014
Subjects: subject: Science Policy
subject: Biological Sciences
subject: Sociology
subject: FOS: Sociology
subject: Ecology
subject: FOS: Biological sciences

description: Community forestry is expanding in developing countries but there is limited knowledge of, and contradictory findings about, its contribution to biodiversity conservation. This study aims at increasing the understanding of tree species diversity in community forests compared to National Parks. A forest inventory was carried out in four community forests and one National Park in the mid-hills of central Nepal. The study found that community forestry has contributed to high tree species diversity where forest management communities have interests in multiple species, but most community forests are moving toward promoting limited timber yielding species that have high economic value. Linking community forestry with economic incentives for conserving multiple tree species could therefore be a strategy to conserve biodiversity outside of protected areas.
title: Synthesis of Reverse-Flex Cytosine Nucleoside Analogues As Potential Antiviral Therapeutics
title: Synthesis of Reverse Fleximer-Cytosine Nucleoside Analogues as Potential Antiviral Therapeutics
titleType: AlternativeTitle
Creators: name: Smart, Viviana
name: Waters, Charlie
name: Seley-Radtke, Katherine
Publisher: name: Maryland Shared Open Access Repository
Year: 2022
Subjects: Nucleoside analogues
Reverse Fleximers
Antiviral Therapeutics

description: UMBC 26th Undergraduate Research and Creative Achievement Day (URCAD), April 18-24, 2022
description: The aim for the current project is to synthesize reverse flex-Cytosine nucleosides and their prodrugs, as well as to apply modifications at the C5’ position of the pyrimidine base in order to explore new potential antiviral activity against coronaviruses and other viruses being targeted by our research group.
Typhlusechus ignotus Doyen 1988
Creators: name: Pérez-Hernández, Cisteil Xinum
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Tenebrionidae
Typhlusechus
Typhlusechus ignotus

description: - Typhlusechus ignotus Doyen, 1988
Paratype: 1 [unknown sex]. MEXICO: Jalisco, Estación de Biología Chamela, UNAM, 28/VII al 02/VIII/1984. Col. J. T. Doyen; ex. Leaf litter berlesate.
Conservation status: Complete, well-preserved.
description: Published as part of Pérez-Hernández, Cisteil Xinum, 2017, An annotated catalogue of the Coleoptera types deposited in the National Insect Collection (CNIN) of the National Autonomous University of Mexico, pp. 1-128 in Zootaxa 4288 (1) on page 114, DOI: 10.11646/zootaxa.4288.1.1, http://zenodo.org/record/1010410
ВПРОВАДЖЕННЯ ІННОВАЦІЙНОЇ МОДЕЛІ БІБЛІОТЕКИ УНІВЕРСИТЕТУ ЯК ЧИННИК ГЛИБОКОЇ ІНТЕЛЕКТУАЛІЗАЦІЇ БІБЛІОТЕЧНОЇ ПРОФЕСІЇ = THE INTRODUCTION OF AN INNOVATIVE MODEL OF THE UNIVERSITY LIBRARY AS A FACTOR OF DEEP LIBRARY PROFESSION INTELLECTUALIZATION
Creators: name: Kolesnykova, Tetyana
Publisher: name: figshare
Year: 2014
Subjects: subject: Library and Information Studies
subject: FOS: Media and communications
subject: Digital Humanities
subject: Education

description: У статті визначено нові ознаки інноваційної моделі університетської бібліотеки та з’ясовано
чинники глибокої інтелектуалізація бібліотечної професії на основі аналізу діяльності науково-
технічної бібліотеки Дніпропетровського національного університету залізничного транспорту імені академіка В. Лазаряна. Досліджено, що інформатизація спричинила зміну лінійної комунікаційної моделі діяльності університетської бібліотеки на нелінійну (інтеракційну). This article defines new features of an innovative model of the university library, and finds out the
factors of deep library profession intellectualization on the basis of scientific and technical library analysis of the Dnipropetrovs’k National University of Railway Transport named after Academician Lazarуan. There was studied that informatization caused the substitution of the linear communication model of the University Library by the nonlinear (Interactional).
Noserus doyeni Garcia-Paris, Coca-Abia & Parra-Olea 2001
Creators: name: Pérez-Hernández, Cisteil Xinum
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Zopheridae
Noserus
Noserus doyeni

description: - Noserus doyeni García-París, Coca-Abia & Parra-Olea, 2001
Holotype: ♂. MEXICO: Nuevo León, Cerro Potosí, 2800 m, 23/V/1997 Col. M. García-París y G. Parra-Olea. Labeled: “ZOF-4”.
Conservation status: Complete, well-preserved.
Paratype: 1 ♀. Ídem. Labeled: “ZOF-4a”.
Conservation status: Complete, well-preserved; genitalia glued on a card. Paratypes: 2 ♂. Ídem. Labeled: “ZOF-4e, ZOF-4d”.
Conservation status: Complete, well-preserved; genitalia glued on a card. “Ninth segment, genital, leg and antenna with SEM.”
Additional notes: Current combination: Sesaspis doyeni (García-París, Coca-Abia, & Parra-Olea), (see Foley & Ivie 2008).
description: Published as part of Pérez-Hernández, Cisteil Xinum, 2017, An annotated catalogue of the Coleoptera types deposited in the National Insect Collection (CNIN) of the National Autonomous University of Mexico, pp. 1-128 in Zootaxa 4288 (1) on page 115, DOI: 10.11646/zootaxa.4288.1.1, http://zenodo.org/record/1010410
Detection and Analysis of Common Fragile Sites in Drosophila melanogaster
Creators: name: LaFave, Matthew C.
Publisher: name: figshare
Year: 2014
Subjects: subject: Molecular Biology
subject: Genetics
subject: FOS: Biological sciences

description: Common fragile sites (CFSs) are regions of DNA exceptionally prone to breakage.
While these regions have implications in cancer, the causes of chromosome fragility remain poorly understood. This is partially due to relatively low-resolution cytological mapping of CFSs, and the use of exogenous agents to induce chromosome breakage. In an effort to better understand the causes of fragility, I have developed Drosophila melanogaster as a model for CFS study. In doing so, I have developed approaches to identify CFSs at a high resolution, based on both spontaneous chromosomal events and breakage induced by the inhibition of replication. In the first approach, I used a mutant form of mus309, the ortholog of human BLM helicase, to locate CFSs by visualizing sites of DNA breakage as mitotic crossovers. High rates of breakage correspond to CFSs, and results from my study indicate that there is a significantly non-uniform rate of mitotic crossovers across the left arm of chromosome 2. This work constitutes the first report of specific regions sensitive to endogenous damage in D. melanogaster. Further, the resolution of damage detection can be brought even higher with SNP mapping. My second approach is a novel assay that uses S2 cell culture to detect preferential sites of exogenous DNA integration, a hallmark of CFSs. This allows me to survey the entire genome, while using high- throughput sequencing to obtain a resolution of CFS detection orders of magnitude better than previous studies. I obtained numerous integration events under a variety of conditions, providing evidence of putative fragile regions. I anticipate that the assays I developed will serve as valuable tools for the detection of DNA breakage in future studies. Further, I expect the characterization of the CFSs detected from both of these approaches will lead to a better understanding of the causes of inherent genome instability.
Nosoderma sylvaticum Garcia-Paris, Coca-Abia & Parra-Olea 2006
Creators: name: Pérez-Hernández, Cisteil Xinum
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Zopheridae
Nosoderma
Nosoderma sylvaticum

description: - Nosoderma sylvaticum García-París, Coca-Abia & Parra-Olea, 2006
Holotype: ♂. MEXICO: Tamaulipas, Gómez Farías, Alta Cima, 24/V/1997. Col. M. García-París y G. Parra-Olea. Labeled: “ZOF-7”.
Conservation status: Complete, well-preserved; genitalia glued on a card. Additional notes: Current combination: Sesaspis sylvatica (García-París, Coca-Abia, & Parra-Olea) (see Foley & Ivie 2008).
description: Published as part of Pérez-Hernández, Cisteil Xinum, 2017, An annotated catalogue of the Coleoptera types deposited in the National Insect Collection (CNIN) of the National Autonomous University of Mexico, pp. 1-128 in Zootaxa 4288 (1) on page 115, DOI: 10.11646/zootaxa.4288.1.1, http://zenodo.org/record/1010410
BioExcel Webinar #2 - Performance Tuning and Optimization of GROMACS
Creators: name: Abraham, Mark
Publisher: name: Zenodo
Year: 2016
Subjects: webinar

description: Want to know more about how to get the best value from your simulation settings and hardware for GROMACS performance? This webinar will provide a quick overview of GROMACS internals and how that affects how fast your simulation runs. A few straightforward considerations can often improve your time-to-science. We’ll cover the use of GPUs and CPUs, in a single node and in parallel, including the gmx tune_pme optimization tool. Tips for benchmarking with GROMACS will also be provided.
Exploring and Mitigating Cybersecurity Challenges in Electronic Health Records
Creators: name: Triplett, William J.
Publisher: name: Gemilang Maju Publikasi Ilmiah
Year: 2024
Subjects: Cybersecurity
Digital
Electronic Health Records
Encryption
Security Breaches

description: This study explores the complexities of cybersecurity challenges in electronic health record (EHR) systems and provides comprehensive solutions to enhance security. Furthermore, it analyzes existing research on EHR cybersecurity, considers relevant frameworks, and presents a well-designed research approach. Extensive research has examined the cybersecurity landscape of electronic health records (EHRs). Furthermore, it identifies the inherent flaws, challenges, and threats prevalent in existing systems and firmly emphasizes the need for robust security solutions to safeguard sensitive patient information. This study highlights the significance of addressing EHR cybersecurity concerns, enhancing existing knowledge on vulnerabilities, and providing a comprehensive understanding of this field. The study emphasizes the need for proactive and multifaceted security measures that can adapt to the ever-evolving landscape of cyber threats. Future research must continue to explore innovative tools and methodologies to safeguard EHRs against the increasing complexity and sophistication of cyber threats.
Neurobiological and Lifestyle Contributions to Word-Finding Abilities in Healthy Ageing
Creators: name: Oosterhuis, Elise
Publisher: name: Lancaster University
Year: 2024

description: Cognitive ageing is a highly complex and individualised process influenced
 by

 underlying neurobiology and lifestyle factors, where the latter also
 influences

 the former. Currently, the literature lacks clarity on factors influencing
 healthy

 cognitive ageing, particularly concerning word-finding difficulties, which
 are a

 primary challenge associated with ageing. This thesis aimed to investigate
 the

 neurobiological and lifestyle contributions to word-finding in healthy
 ageing.

 Chapter 2 reviewed the revisited Scaffolding Theory of Aging and Cognition

 and Cognitive Reserve (CR) theory. Chapters 3 and 4 investigated the
 relationship between CR and word-finding across the lifespan and in
 Parkinson’s disease (PD). The findings revealed that education,
 occupation, and current lifestyle choices support word-finding in
 middle-aged but not in older adults or PD. Contrary to previous
 literature, CR did not have a positive impact in older adults or PD but
 did mitigate word-finding difficulties in middle age.

 Chapter 4 investigated the link between action language and motor ability
 in PD.

 We demonstrated a relationship between motor and word-finding ability in
 both

 individuals with and without PD, suggesting a potential shared neuronal
 circuit.

 Chapters 5 and 6 aimed to investigate the role of neural coherence in
 word-finding among younger and older adults using electroencephalography.
 Chapter 5 revealed a link between word-finding difficulties and functional
 brain networks, especially in the delta band. Finally, Chapter 6
 demonstrated greater frontocentral phase coherence in older adults during
 action word comprehension, with greater frontocentral phase coherence
 being related to faster action word processing in both younger and older
 adults.

 Overall, this thesis provided evidence for lifestyle contributions to
 word-finding

 abilities in middle-aged but not in older adults. The findings also
 emphasised the significance of neurobiological factors, especially phase
 coherence, in maintaining word-finding abilities across the lifespan. The
 final chapter of this thesis will discuss implications, limitations, and
 suggestions for future research.
Neuroevolutionary Feature Representations for Causal Inference
Creators: name: Burkhart, MC
name: Ruiz, G
Publisher: name: Springer International Publishing
Year: 2022
Subjects: Causal inference
Heterogeneous treatment effects
Feature representations
Neuroevolutionary algorithms
Counterfactual inference

description: Within the field of causal inference, we consider the problem of estimating heterogeneous treatment effects from data. We propose and validate a novel approach for learning feature representations to aid the estimation of the conditional average treatment effect or CATE. Our method focuses on an intermediate layer in a neural network trained to predict the outcome from the features. In contrast to previous approaches that encourage the distribution of representations to be treatment-invariant, we leverage a genetic algorithm that optimizes over representations useful for predicting the outcome to select those less useful for predicting the treatment. This allows us to retain information within the features useful for predicting outcome even if that information may be related to treatment assignment. We validate our method on synthetic examples and illustrate its use on a real life dataset.
БІБЛІОТЕКА ВНЗ: ВІДПОВІДАЛЬНІСТЬ ЗА ПОШИРЕННЯ РЕЗУЛЬТАТІВ НАУКОВИХ ДОСЛІДЖЕНЬ = UNIVERSITY LIBRARY: RESPONSIBILITY FOR DISTRIBUTION OF RESULTS OF SCIENTIFIC RESEARCH
Creators: name: Kolesnykova, Tetyana
Publisher: name: figshare
Year: 2014
Subjects: subject: Library and Information Studies
subject: FOS: Media and communications
subject: Science Policy
subject: Education

description: Мета статті полягає у розгляді проблемних питань щодо розвитку нового напрямку діяльності бібліотек
ВНЗ – відповідальності за поширення результатів наукових досліджень учених інституції у
світовому науковому інфопросторі. Purpose. Study of the problematic aspects concerning the development of the new area of
university library activity, which is the responsibility for distribution of scientific research results of
institution scientists in the world scientific information space is the purpose of the paper.
TOI-2525 b and c: A Pair of Massive Warm Giant Planets with Strong Transit Timing Variations Revealed by TESS
Creators: name: Trifonov, Trifon
name: Brahm, Rafael
name: Jordán, Andrés
name: Hartogh, Christian
name: Henning, Thomas
name: Hobson, Melissa J.
name: Schlecker, Martin
name: Howard, Saburo
name: Reichardt, Finja
name: Espinoza, Nestor
name: Lee, Man Hoi
name: Nesvorny, David
name: Rojas, Felipe I.
name: Barkaoui, Khalid
name: Kossakowski, Diana
name: Boyle, Gavin
name: Dreizler, Stefan
name: Kürster, Martin
name: Heller, René
name: Guillot, Tristan
name: Triaud, Amaury H. M. J.
name: Abe, Lyu
name: Agabi, Abdelkrim
name: Bendjoya, Philippe
name: Crouzet, Nicolas
name: Dransfield, Georgina
name: Gasparetto, Thomas
name: Günther, Maximilian N.
name: Marie-Sainte, Wenceslas
name: Mékarnia, Djamel
name: Suarez, Olga
name: Teske, Johanna
name: Butler, R. Paul
name: Crane, Jeffrey D.
name: Shectman, Stephen
name: Ricker, George R.
name: Shporer, Avi
name: Vanderspek, Roland
name: Jenkins, Jon M.
name: Wohler, Bill
name: Collins, Karen A.
name: Collins, Kevin I.
name: Ciardi, David R.
name: Barclay, Thomas
name: Mireles, Ismael
name: Seager, Sara
name: Winn, Joshua N.
Publisher: name: AAS
Year: 2023

description: The K-type star TOI-2525 has an estimated mass of M = M ? and radius of R = R ? observed by the TESS mission in 22 sectors (within sectors 1 and 39). The TESS light curves yield significant transit events of two companions, which show strong transit timing variations (TTVs) with a semiamplitude of ?6 hr. We performed TTV dynamical and photodynamical light-curve analysis of the TESS data combined with radial velocity measurements from FEROS and PFS, and we confirmed the planetary nature of these companions. The TOI-2525 system consists of a transiting pair of planets comparable to Neptune and Jupiter with estimated dynamical masses of m b = and m c = M Jup, radii of r b = and r c = R Jup, and orbital periods of P b = and P c = days for the inner and outer planet, respectively. The period ratio is close to the 2:1 period commensurability, but the dynamical simulations of the system suggest that it is outside the mean-motion resonance (MMR) dynamical configuration. Object TOI-2525 b is among the lowest-density Neptune-mass planets known to date, with an estimated median density of ? b = g cm?3. The TOI-2525 system is very similar to the other K dwarf systems discovered by TESS, TOI-2202 and TOI-216, which are composed of almost identical K dwarf primaries and two warm giant planets near the 2:1 MMR.
Synthesis, characterization, DFT calculations, and antimicrobial activity of Pd(II) and Co(III) complexes with the condensation derivative of 2-(diphenylphosphino)benzaldehyde and Girard’s T reagent
Creators: name: Kawther Adaila
name: Milenković, Milica
name: Bacchi, Alessia
name: Cantoni, Giulia
name: Swart, Marcel
name: Gruden-Pavlović, Maja
name: Milenković, Marina
name: Božidar Čobeljić
name: Todorović, Tamara
name: Anđelković, Katarina
Publisher: name: Taylor & Francis
Year: 2014
Subjects: Biological Sciences
Chemistry
Earth and Environmental Sciences
Biotechnology
Molecular Biology
Cell Biology
Physics
Biochemistry
Biophysics

description: Complexes of Pd(II) and Co(III) with the condensation derivative of 2-(diphenylphosphino)benzaldehyde and Girard T reagent were synthesized, characterized, and their antimicrobial activities were evaluated. The ligand and the complexes were characterized by elemental analysis, IR and NMR spectroscopies, and X-ray crystallography. In both complexes, the deprotonated ligand was coordinated to the metal through the phosphorus, the imine nitrogen, and the carbonyl oxygen atoms. In the octahedral Co(III) complex, two molecules of ligands were coordinated to metal ion, while square-planar environment of Pd(II) complex was constituted of one tridentate ligand and chloride in the fourth coordination place. The ligand and complexes showed moderate antibacterial activity. The molecular structures of the obtained metal complexes and the relative stabilities of two stereoisomers of the ligand were calculated using density functional theory at the S12g/TZ2P level.