cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Neutron stars in the braneworld within the Eddington-inspired Born-Infeld gravity
Creators: name: Prasetyo, I.
name: Husin, I.
name: Qauli, A. I.
name: Ramadhan, H. S.
name: Sulaksono, A.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We propose the disappearance of "the hyperon puzzle" in neutron star (NS) by invoking two new-physics prescriptions: modified gravity theory and braneworld scenario. By assuming that NS lives on a $3$-brane within a $5d$ empty AdS bulk, gravitationally governed by Eddington-inspired Born-Infeld (EiBI) theory, the field equations can be effectively cast into the usual Einstein's with "apparent" anisotropic energy-momentum tensor. Solving the corresponding brane-TOV equations numerically, we study its mass-radius relation. It is known that the appearance of finite brane tension $λ$ reduces the compactness of the star. The compatibility of the braneworld results with observational constraints of NS mass and radius can be restored in our model by varying the EiBI's coupling constant, $κ$. We found that within the astrophysically-accepted range of parameters ($0
description: 20 pages, 8 figures
Additional file 2: of X chromosome dosage and presence of SRY shape sex-specific differences in DNA methylation at an autosomal region in human cells
Creators: name: Ho, Bianca
name: Greenlaw, Keelin
name: Tuwaijri, Abeer Al
name: Moussette, Sanny
name: Martínez, Francisco
name: Giorgio, Elisa
name: Brusco, Alfredo
name: Ferrero, Giovanni
name: Linhares, Natália
name: Eugênia Valadares
name: Svartman, Marta
name: Kalscheuer, Vera
name: Criado, Germán Rodríguez
name: Laprise, Catherine
name: Greenwood, Celia
name: Naumova, Anna
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Table S1. Primers used in the study. (DOCX 12 kb)
Additional file 1: of Autism prevalence in China is comparable to Western prevalence
Creators: name: Sun, Xiang
name: Allison, Carrie
name: Wei, Liping
name: Matthews, Fiona
name: Auyeung, Bonnie
name: Wu, Yu
name: Griffiths, Sian
name: Zhang, Jie
name: Baron-Cohen, Simon
name: Brayne, Carol
Publisher: name: figshare
Year: 2019
Subjects: Molecular Biology
Biotechnology
Chemical Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Developmental Biology

description: Supplementary information. (DOCX 28Â kb)
Condition on Ramond-Ramond fluxes for factorization of worldsheet scattering in anti-de Sitter space
Creators: name: Wulff, Linus
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Factorization of scattering is the hallmark of integrable 1+1 dimensional quantum field theories. For factorization of scattering to be possible the set of masses and momenta must be conserved in any two-to-two scattering process. We use this fact to constrain the form of the Ramond-Ramond fluxes for integrable supergravity anti-de Sitter backgrounds by analysing tree-level scattering of two AdS bosons into two fermions on the worldsheet of a BMN string. We find a condition which can be efficiently used to rule out integrability of AdS strings and therefore of the corresponding AdS/CFT dualities, as we demonstrate for some simple examples.
description: 5 pages; v2: Removed condition on fermion masses being equal and added references. Matches published version
Thor Larsen: A WWII RAF Veteran's Journey
Creators: name: Project Team, Their Finest Hour
Publisher: name: University of Oxford
Year: 2024
Subjects: classificationCode: 430304
subject: British history
classificationCode: 430308
subject: European history (excl. British, classical Greek and Roman)
classificationCode: 430316
subject: International history

description: My grandfather, Thor Larsen, was in WWII, having joined the RAF. He trained in Canada as a lot of aircrew did. He flew in and out of Scotland and married his wife during this period.He became a prisoner of war thrice.On one occasion, he was moved to Dresden prison after having a German lawyer attend him.He escaped the P.O.W. camp and weighed 6 stones! He escaped from Dresden. The escapers had to eat cabbage and sugarbeet that they found. He had to be nursed back to life. His wife tried to find out about him and where he was. He was still in Dresden after the war finished whereupon he was shipped to Brighton and tried to go back to living a good life. He became a member of the British Embassy. His WWII story has been turned into a booklet.
Additional file 1: of The association between subgroups of MRI findings identified with latent class analysis and low back pain in 40-year-old Danes
Creators: name: Jensen, Rikke
name: Kent, Peter
name: Jensen, Tue
name: Kjaer, Per
Publisher: name: figshare
Year: 2018
Subjects: subject: Cell Biology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: Plant Biology

description: The proportion of people in subgroup 1â 6 for each pain measure and proportion of people included in each analysis. (PDF 1452Â kb)
Fraude aduaneira cometida antes da entrada em vigor do regime geral das infracções tributárias: burla ou descaminho? (Parecer)
Creators: name: Silva, Germano Marques Da
name: Silva, Isabel Marques Da
Publisher: name: Direito e Justiça
Year: 2004

description: Direito e Justiça, v. 18 n. 1 (2004)
Collectivity from interference
Creators: name: Blok, Boris
name: Jäkel, Christian D.
name: Strikman, Mark
name: Wiedemann, Urs Achim
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: Nuclear Experiment (nucl-ex)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: In hadronic collisions, interference between different production channels affects momentum distributions of multi-particle final states. As this QCD interference does not depend on the strong coupling constant, it is part of the no-interaction baseline that needs to be controlled prior to searching for other manifestations of collective dynamics. Here, we introduce a model that is based on the QCD theory of multi-parton interactions and that allows one to study interference effects in the production of $m$ particles in hadronic collisions with $N$ parton-parton interactions ("sources"). In an expansion in powers of $1/(N_c^2-1)$ and to leading order in the number of sources $N$, we calculate interference effects in the $m$-particle spectra and we determine from them the second and fourth order cumulant momentum anisotropies $v_n$. Without invoking any azimuthal asymmetry and any density dependent non-linear dynamics in the incoming state, and without invoking any interaction in the final state, we find that QCD interference alone can give rise to values for $v_n\lbrace 2\rbrace$ and $v_n\lbrace 4\rbrace$, $n$ even, that persist unattenuated for increasing number of sources, that may increase with increasing multiplicity and that agree with measurements in proton-proton (pp) collisions in terms of the order of magnitude of the signal and the approximate shape of the transverse momentum dependence. We further find that the non-abelian features of QCD interference can give rise to odd harmonic anisotropies. These findings indicate that the no-interaction baseline including QCD interference effects can make a sizeable if not dominant contribution to the measured $v_n$ coefficients in pp collisions. Prospects for analyzing QCD interference contributions further and their possible relevance for proton-nucleus and nucleus-nucleus collisions are discussed shortly.
description: 49 pages, 15 figures, revised version to appear in JHEP
Additional file 1: of X chromosome dosage and presence of SRY shape sex-specific differences in DNA methylation at an autosomal region in human cells
Creators: name: Ho, Bianca
name: Greenlaw, Keelin
name: Tuwaijri, Abeer Al
name: Moussette, Sanny
name: Martínez, Francisco
name: Giorgio, Elisa
name: Brusco, Alfredo
name: Ferrero, Giovanni
name: Linhares, Natália
name: Eugênia Valadares
name: Svartman, Marta
name: Kalscheuer, Vera
name: Criado, Germán Rodríguez
name: Laprise, Catherine
name: Greenwood, Celia
name: Naumova, Anna
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Developmental Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Figure S1. Experimental design. (DOCX 18 kb)
title: ADCO, Cartulaire de Cîteaux pour la grange et seigneurie d'Ouges (XVe siècle), Cart. 173 (11 H 939), 226 folios, f. 0214
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2015
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire

description: Cartulaire de Cîteaux pour la grange et seigneurie d'Ouges (XVe siècle), Archives départementales de la Côte-d'Or, Cart. 173 (11 H 939), 226 folios, f. 0214, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de Cîteaux pour la grange et seigneurie d'Ouges (XVe siècle), Archives départementales de la Côte-d'Or, Cart. 173 (11 H 939), 226 folios, f. 0214, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Additional file 1 of Radiation-induced lymphopenia correlates with survival in nasopharyngeal carcinoma: impact of treatment modality and the baseline lymphocyte count
Creators: name: Xie, Xiaoxue
name: Gong, Shenglan
name: Jin, Hekun
name: Yang, Pei
name: Xu, Ting
name: Cai, Yilong
name: Guo, Chengxian
name: Zhang, Rong
name: Lou, Fan
name: Yang, Wenjuan
name: Wang, Hui
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Cell Biology
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 1: Table S1. Comparison of V5 (mm3) between IMRT and 2D-CRT plans in 6 patients
“Sobre a inimputabilidade e a saúde mental”. Discurso proferido na abertura do curso de Mestrado em Medicina Legal, na aula Magna da Faculdade de Medicina de Lisboa
Creators: name: Moura, José Souto De
Publisher: name: Direito e Justiça
Year: 2004

description: Direito e Justiça, v. 18 n. 1 (2004)
MOESM1 of Differentiating the structure of PtNi octahedral nanoparticles through combined ADFâ EDX simulations
Creators: name: MacArthur, Katherine
name: Heggen, Marc
name: Dunin-Borkowski, Rafal
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Computational Biology

description: Additional file 1. Figure S1: Simulated ADF STEM images and EDX maps of structures (2)-(6) viewed down the <110> zone-axis. Figure S2: Simulated ADF STEM images and EDX maps of structures (2)-(6) viewed 5Â° from the <110> zone-axis towards the <100> zone-axis. Figure S3: Simulated ADF STEM images and EDX maps of structures (2)-(6) viewed down the <100> zone-axis. Figure S4: Simulated EDX maps from structures (3), (4) and (6) viewed close to the <100> orientation with realistic noise for a selection of dwell times.
Open Systems in Classical Mechanics
Creators: name: Baez, John C.
name: Weisbart, David
name: Yassine, Adam M.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mathematical Physics (math-ph)
subject: Category Theory (math.CT)
subject: FOS: Physical sciences
subject: FOS: Mathematics
subject: 18B10, 70A05, 53Z05

description: Generalized span categories provide a framework for formalizing mathematical models of open systems in classical mechanics. We introduce categories $\mathsf{LagSy}$ and $\mathsf{HamSy}$ that respectively provide a categorical framework for the Lagrangian and Hamiltonian descriptions of open classical mechanical systems. The morphisms of $\mathsf{LagSy}$ and $\mathsf{HamSy}$ correspond to such open systems, and composition of morphisms models the construction of systems from subsystems. The Legendre transformation gives rise to a functor from $\mathsf{LagSy}$ to $\mathsf{HamSy}$ that translates from the Lagrangian to the Hamiltonian perspective.
description: 31 pages
Reproducibility, Preservation, and Access to Research with ReproZip and ReproServer
Creators: name: Rampin, Rémi
name: Steeves, Vicky
name: Chirigati, Fernando
Publisher: name: Zenodo
Year: 2019
Subjects: reproducibility
software
data access

description: The adoption of reproducibility remains low, despite incentives becoming increasingly common in different domains, conferences, and journals. The truth is, reproducibility is technically difficult to achieve due to the complexities of computational environments.

 To address these technical challenges, we created ReproZip, an open-source tool that packs research along with all the necessary information to reproduce it, including data files, software, OS version, and environment variables. Everything is then bundled into an .rpz file, which users can use to reproduce the work with ReproUnzip and an unpacker (Docker, Vagrant, and Singularity). The .rpz file is general and contains rich metadata: more unpackers can be added as needed, better guaranteeing long-term preservation.

 However, installing the unpackers can still be burdensome for secondary users of ReproZip bundles. In this paper, we will discuss how ReproZip and our new tool ReproServer can be used together to facilitate access to well-preserved, reproducible work. ReproServer is a cloud application that allows users to upload or provide a link to a ReproZip bundle, and then interact with/reproduce the contents from the comfort of their browser. Users are then provided a stable link to the unpacked work on ReproServer they can share with reviewers or colleagues.
Lettre de Alexandre-Xavier Panel à Jean-François Séguier, 1732-10-23
Creators: name: Panel, Alexandre-Xavier
name: Alexandre-Xavier Panel
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2021
Subjects: Epigraphie
Numismatique

description: [transcription] Monsieur,

Me voici sur mon départ d'Avignon, prêt d'entrer dans une nouvelle carrière. Mes études de théologie sont finies et désormais je ne m'occuperai plus qu'à mon ouvrage sur les médailles. Je vais demeurer à Marseille avec les pensionnaires. Cette ville me fournira la facilité d'entretenir par la voie de mer avec les savants des pays étrangers. Avant de partir, j'ai cru devoir vous faire resouvenir du reste des inscriptions que je vous avais envoyées et que vous gardâtes parce que vous n'aviez pas eu le temps de les copier. Si vous avez fait ces copies, vous pourrez me les renvoyer par le porteur les miennes. Je ne partirai d'ici que l'avant-veille de la Toussaint. Vous m'aviez promis une copie complète de vos inscriptions, comme je vous en promettais une de toutes celles que je découvrirais et qu'on [fol. 53 v] me communiquerai ou que je verrai dans des voyages futurs. C`était pour être en état de travailler de concert à l'ouvrage que nous avions projeté sur cette matière et pour garantir votre recueil d'une perte irréparable en cas que l'un des deux eût à perdre son exemplaire. Daignez me parler à coeur ouvert et me répondre précisément sur cet article, il faut que je sache à quoi m'en tenir et pour cela un oui ou un non m'est nécessaire de votre part. On m'a fait de quelque part du monde les avances les plus gracieuses, mais avances qui seront soutenues et qui vient d'une personne qui a déjà de grandes collections d'inscriptions. Avant de m'engager avec elle, j'ai cru devoir sonder vos dispositions. Si vous persistez dans le dessein que nous avions formé, il faut vous résoudre à me communiquer votre travail. Si vous ne pouvez me l'envoyer, il faudra la copier, non pas avec cette beauté d'écriture que j'ai admirée dans vos écrits. De simples traits de plumes suffiront pour les lettres initiales mais en même temps il faudra serrer les inscriptions pour ne pas [fol. 54 r] grossir les cahiers et se charger d'un poids inutile de papier. à mon tour, vous recevrez tout ce que je découvrirai et je découvrirai beaucoup j'en suis sûr. Si vous avez acquis quelque belle médaille d'or, d'argent, de bronze. Vous me ferez plaisir de m'en apprendre le détail. Je suis avec respect.

Monsieur,

Votre très humble et très obéissant serviteur

Panel, jésuite.

D'Avignon, le 23 octobre 1732.
description: Source: [lieu de Conservation] Nîmes, Bibliothèque Carré d'Art [cote]ms. 147_4, fol. 53-54
description: Source: ark:/12148/btv1b100152922
Electronic and magnetic properties of single chalcogen vacancies in MoS2/Au(111)
Creators: name: Trishin, Sergey
name: Lotze, Christian
name: Krane, Nils
name: Franke, Katharina J.
Publisher: name: Freie Universität Berlin
Year: 2023
Subjects: subject: Density of states
subject: Kondo effect
subject: Surfaces
subject: Transition metal dichalcogenides
subject: Atomic force microscopy
subject: Scanning probe microscopy
subject: Scanning tunneling microscopy
subject: Scanning tunneling spectroscopy
subject: 500 Naturwissenschaften und Mathematik::530 Physik::539 Moderne Physik

description: Two-dimensional (2D) transition-metal dichalcogenides (TMDCs) are considered highly promising platforms for next-generation optoelectronic devices. Owing to its atomically thin structure, device performance is strongly impacted by a minute amount of defects. Although defects are usually considered to be disturbing, defect engineering has become an important strategy to control and design new properties of 2D materials. Here, we produce single S vacancies in a monolayer of MoS2 on Au(111). Using a combination of scanning tunneling and atomic force microscopy, we show that these defects are negatively charged and give rise to a Kondo resonance, revealing the presence of an unpaired electron spin exchange coupled to the metal substrate. The strength of the exchange coupling depends on the density of states at the Fermi level, which is modulated by the moiré structure of the MoS2 lattice and the Au(111) substrate. In the absence of direct hybridization of MoS2 with the metal substrate, the S vacancy remains charge neutral. Our results suggest that defect engineering may be used to induce and tune magnetic properties of otherwise nonmagnetic materials.
MindID: Person Identification from Brain Waves through Attention-based Recurrent Neural Network
Creators: name: Zhang, Xiang
name: Yao, Lina
name: Kanhere, Salil S.
name: Liu, Yunhao
name: Gu, Tao
name: Chen, Kaixuan
Publisher: name: arXiv
Year: 2017
Subjects: subject: Human-Computer Interaction (cs.HC)
subject: FOS: Computer and information sciences

description: Person identification technology recognizes individuals by exploiting their unique, measurable physiological and behavioral characteristics. However, the state-of-the-art person identification systems have been shown to be vulnerable, e.g., contact lenses can trick iris recognition and fingerprint films can deceive fingerprint sensors. EEG (Electroencephalography)-based identification, which utilizes the users' brainwave signals for identification and offers a more resilient solution, draw a lot of attention recently. However, the accuracy still requires improvement and very little work is focusing on the robustness and adaptability of the identification system. We propose MindID, an EEG-based biometric identification approach, achieves higher accuracy and better characteristics. At first, the EEG data patterns are analyzed and the results show that the Delta pattern contains the most distinctive information for user identification. Then the decomposed Delta pattern is fed into an attention-based Encoder-Decoder RNNs (Recurrent Neural Networks) structure which assigns various attention weights to different EEG channels based on the importance of channels. The discriminative representations learned from the attention-based RNN are used to recognize the user identification through a boosting classifier. The proposed approach is evaluated over 3 datasets (two local and one public). One local dataset (EID-M) is used for performance assessment and the result illustrates that our model achieves an accuracy of 0.982 which outperforms the baselines and the state-of-the-art. Another local dataset (EID-S) and a public dataset (EEG-S) are utilized to demonstrate the robustness and adaptability, respectively. The results indicate that the proposed approach has the potential to be largely deployed in the practice environment.
description: Published in UbiComp 2018; ACM IMWUT, Vol.2, No. 3, Article No.149, pp 1-23
Additional file 1: of Reactive community-based self-administered treatment against residual malaria transmission: study protocol for a randomized controlled trial
Creators: name: Okebe, Joseph
name: Ribera, Joan
name: Balen, Julie
name: Fatou Jaiteh
name: Masunaga, Yoriko
name: Nwakanma, Davis
name: Bradley, John
name: Shunmay Yeung
name: Grietens, Koen Peeters
name: DâAlessandro, Umberto
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Standard Protocol Items: Recommendations for Interventional Trials (SPIRIT) 2013 checklist: recommended items to address in a clinical trial protocol and related documents. (DOC 59 kb)
Stepwise conversion of the Cys6[4Fe–3S] to a Cys4[4Fe–4S] cluster and its impact on the oxygen tolerance of [NiFe]-hydrogenase
Creators: name: Schmidt, Andrea
name: Kalms, Jacqueline
name: Lorent, Christian
name: Katz, Sagie
name: Frielingsdorf, Stefan
name: Evans, Rhiannon M.
name: Fritsch, Johannes
name: Siebert, Elisabeth
name: Teutloff, Christian
name: Armstrong, Fraser A.
name: Zebger, Ingo
name: Lenz, Oliver
name: Scheerer, Patrick
Publisher: name: Freie Universität Berlin
Year: 2023
Subjects: subject: hydrogenase
subject: O2- tolerance
subject: X-ray crystallography
subject: protein film electrochemistry
subject: spectro-electrochemistry
subject: Resonance Raman spectroscopy
subject: EPR spectroscopy
subject: IR spectroscopy
subject: 500 Naturwissenschaften und Mathematik::530 Physik::539 Moderne Physik

description: The membrane-bound [NiFe]-hydrogenase of Cupriavidus necator is a rare example of a truly O2-tolerant hydrogenase. It catalyzes the oxidation of H2 into 2e− and 2H+ in the presence of high O2 concentrations. This characteristic trait is intimately linked to the unique Cys6[4Fe–3S] cluster located in the proximal position to the catalytic center and coordinated by six cysteine residues. Two of these cysteines play an essential role in redox-dependent cluster plasticity, which bestows the cofactor with the capacity to mediate two redox transitions at physiological potentials. Here, we investigated the individual roles of the two additional cysteines by replacing them individually as well as simultaneously with glycine. The crystal structures of the corresponding MBH variants revealed the presence of Cys5[4Fe–4S] or Cys4[4Fe–4S] clusters of different architecture. The protein X-ray crystallography results were correlated with accompanying biochemical, spectroscopic and electrochemical data. The exchanges resulted in a diminished O2 tolerance of all MBH variants, which was attributed to the fact that the modified proximal clusters mediated only one redox transition. The previously proposed O2 protection mechanism that detoxifies O2 to H2O using four protons and four electrons supplied by the cofactor infrastructure, is extended by our results, which suggest efficient shutdown of enzyme function by formation of a hydroxy ligand in the active site that protects the enzyme from O2 binding under electron-deficient conditions.
title: Applicability of Drug Response Metrics for Cancer Studies using Biomaterials
Creators: name: Brooks, Elizabeth A
name: Galarza, Sualyneth
name: Gencoglu, Maria F
name: Cornelison, R. Chase
name: Munson, Jennifer M
name: Peyton, Shelly
Publisher: name: University of Massachusetts Amherst
Year: 2019

description: Bioengineers have built models of the tumour microenvironment (TME) in which to study cell–cell interactions, mechanisms of cancer growth and metastasis, and to test new therapies. These models allow researchers to culture cells in conditions that include features of the in vivo TME implicated in regulating cancer progression, such as extracellular matrix (ECM) stiffness, integrin binding to the ECM, immune and stromal cells, growth factor and cytokine depots, and a three-dimensional geometry more representative of the in vivo TME than tissue culture polystyrene (TCPS). These biomaterials could be particularly useful for drug screening applications to make better predictions of efficacy, offering better translation to preclinical models and clinical trials. However, it can be challenging to compare drug response reports across different biomaterial platforms in the current literature. This is, in part, a result of inconsistent reporting and improper use of drug response metrics, and vast differences in cell growth rates across a large variety of biomaterial designs. This study attempts to clarify the definitions of drug response measurements used in the field, and presents examples in which these measurements can and cannot be applied. We suggest as best practice to measure the growth rate of cells in the absence of drug, and follow our ‘decision tree’ when reporting drug response metrics.
Optimal secure quantum teleportation of coherent states of light
Creators: name: Liuzzo-Scorpo, Pietro
name: Adesso, Gerardo
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Mathematical Physics (math-ph)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We investigate quantum teleportation of ensembles of coherent states of light with a Gaussian distributed displacement in phase space. Recently, the following general question has been addressed in [P. Liuzzo-Scorpo et al., arXiv:1705.03017]: Given a limited amount of entanglement and mean energy available as resources, what is the maximal fidelity that can be achieved on average in the teleportation of such an alphabet of states? Here, we consider a variation of this question, where Einstein-Podolsky-Rosen steering is used as a resource rather than plain entanglement. We provide a solution by means of an optimisation within the space of Gaussian quantum channels, which allows for an intuitive visualisation of the problem. We first show that not all channels are accessible with a finite degree of steering, and then prove that practical schemes relying on asymmetric two-mode Gaussian states enable one to reach the maximal fidelity at the border with the inaccessible region. Our results provide a rigorous quantitative assessment of steering as a resource for secure quantum teleportation beyond the so-called no-cloning threshold. The schemes we propose can be readily implemented experimentally by a conventional Braunstein-Kimble continuous variable teleportation protocol involving homodyne detections and corrective displacements with an optimally tuned gain. These protocols can be integrated as elementary building blocks in quantum networks, for reliable storage and transmission of quantum optical states.
description: 10 pages, 2 figures. Published in Proceedings of SPIE Optics + Photonics 2017. Update: Eq. (24) corrected and some statements rectified
Additional file 1: of Breast cancer subtype discordance: impact on post-recurrence survival and potential treatment options
Creators: name: McAnena, Peter
name: Brown, James
name: A. Ramli
name: C. Curran
name: C. Malone
name: R. McLaughlin
name: K. Barry
name: Brown JAL
name: M. Kerin
Publisher: name: figshare
Year: 2018
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Developmental Biology
subject: Cancer
subject: Plant Biology

description: Table S1. Impact of Location/Neoadjuvant chemotherapy/Surgery on discordance. Quantifying: Recurrence location, Neoadjuvant Chemo Rx, Surgery, Change subtype, Gain of Receptor. (DOCX 24Â kb)
Exciton–polaron interactions in metal halide perovskite nanocrystals revealed via two-dimensional electronic spectroscopy
Creators: name: Brosseau, Patrick
name: Ghosh, Arnab
name: Seiler, Hélène
name: Strandell, Dallas
name: Kambhampati, Patanjali
Publisher: name: Freie Universität Berlin
Year: 2023
Subjects: subject: exciton–polaron interactions
subject: metal halide perovskite nanocrystals
subject: liquid/solid duality
subject: two-dimensional electronic (2DE) spectroscopy
subject: 500 Naturwissenschaften und Mathematik::530 Physik::539 Moderne Physik

description: Metal halide perovskite nanocrystals have been under intense investigation for their promise in optoelectronic devices due to their remarkable physics, such as liquid/solid duality. This liquid/solid duality may give rise to their defect tolerance and other such useful properties. This duality means that the electronic states are fluctuating in time, on a distribution of timescales from femtoseconds to picoseconds. Hence, these lattice induced energy fluctuations that are connected to polaron formation are also connected to exciton formation and dynamics. We observe these correlations and dynamics in metal halide perovskite nanocrystals of CsPbI3 and CsPbBr3 using two-dimensional electronic (2DE) spectroscopy, with its unique ability to resolve dynamics in heterogeneously broadened systems. The 2DE spectra immediately reveal a previously unobserved excitonic splitting in these 15 nm NCs that may have a coarse excitonic structure. 2D lineshape dynamics reveal a glassy response on the 300 fs timescale due to polaron formation. The lighter Br system shows larger amplitude and faster timescale fluctuations that give rise to dynamic line broadening. The 2DE signals enable 1D transient absorption analysis of exciton cooling dynamics. Exciton cooling within this doublet is shown to take place on a slower timescale than within the excitonic continuum. The energy dissipation rates are the same for the I and Br systems for incoherent exciton cooling but are very different for the coherent dynamics that give rise to line broadening. Exciton cooling is shown to take place on the same timescale as polaron formation, revealing both as coupled many-body excitation.
title: Perturbed free induction decay obscures early time dynamics in two-dimensional electronic spectroscopy
title: The case of semiconductor nanocrystals
titleType: Subtitle
Creators: name: Brosseau, Patrick
name: Seiler, Hélène
name: Palato, Samuel
name: Sonnichsen, Colin
name: Baker, Harry
name: Socie, Etienne
name: Strandell, Dallas
name: Kambhampati, Patanjali
Publisher: name: Freie Universität Berlin
Year: 2023
Subjects: subject: Phonons
subject: Quantum dots
subject: Nanocrystals
subject: Cross phase modulation
subject: Transient-absorption spectroscopy
subject: Two-dimensional electronic spectroscopy
subject: Ultrafast laser spectroscopy
subject: Quantum coherence
subject: 500 Naturwissenschaften und Mathematik::530 Physik::539 Moderne Physik

description: Two-dimensional electronic spectroscopy (2DES) has recently been gaining popularity as an alternative to the more common transient absorption spectroscopy due to the combination of high frequency and time resolution of 2DES. In order to advance the reliable analysis of population dynamics and to optimize the time resolution of the method, one has to understand the numerous field matter interactions that take place at an early and negative time. These interactions have historically been discussed in one-dimensional spectroscopy as coherent artifacts and have been assigned to both resonant and non-resonant system responses during or before the pulse overlap. These coherent artifacts have also been described in 2DES but remain less well-understood due to the complexity of 2DES and the relative novelty of the method. Here, we present 2DES results in two model nanocrystal samples, CdSe and CsPbI3. We demonstrate non-resonant signals due to solvent response during the pulse overlap and resonant signals, which we assign to perturbed free induction decay (PFID), both before and during the pulse overlap. The simulations of the 2DES response functions at early and negative time delays reinforce the assignment of the negative time delay signals to PFID. Modeling reveals that the PFID signals will severely distort the initial picture of the resonant population dynamics. By including these effects in models of 2DES spectra, one is able to push forward the extraction of early time dynamics in 2DES.
Additional file 12: of Strain-dependent effects of clinical echovirus 30 outbreak isolates at the blood-CSF barrier
Creators: name: Dahm, Tobias
name: Adams, Ortwin
name: Boettcher, Sindy
name: Diedrich, Sabine
name: Morozov, Vasily
name: Hansman, Grant
name: Fallier-Becker, Petra
name: Schädler, Sebastian
name: Burkhardt, Claus
name: Weiss, Christel
name: Stump-Guthier, Carolin
name: Ishikawa, Hiroshi
name: Schroten, Horst
name: Schwerk, Christian
name: Tenenbaum, Tobias
name: Rudolph, Henriette
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Amino acid substitutions observed between E-30 Bast. and the outbreak strains. To illustrate differences in between the E-30 strains used, a table was designed with the data that has already been displayed in Additional file 11. The positions that matched between 13-311 and the other three E-30 strains are highlighted in green; those that were different are left blank (white). 13-311 and 14-397 vary in 10 amino acids, whereas 13-311 and 13-759 vary in 70 amino acids. (PDF 139 kb)
Coordinated Access for Data, Researchers, and Environments: Deploying CADRE at the Australian Data Archive
Creators: name: Perry, Ryan
Publisher: name: Zenodo
Year: 2024
Subjects: Tools
Repositories
Infrastructure
Open Access
Governance
Data Publishing

description: The Coordinated Access for Data, Researchers and Environments (CADRE) project has established a data access management platform for the social sciences and related disciplines. The CADRE platform implements the Five Safes Framework in Australian research institutions and collaborating government and private sector agencies to improve access to sensitive data while decreasing risk, time and costs associated with providing access.

The CADRE data access platform was integrated with Dataverse, the data catalogue at the Australian Data Archive (ADA), in July 2024 to manage and coordinate access to sensitive data. The platform has improved data security and user experience by integrating details about people and their projects, data, and outputs together in applications for data access. End users can link and reuse existing information about their projects and collaborators, and custodians can evaluate this collated information against their access criteria.

In this talk I will discuss the ADA s experience using CADRE for the management of data access. Improvements in service delivery include management of verified user identities and projects, facilitating approval decisions by data custodians external to ADA, and coordinating access for multi-user projects, including training courses. I will also discuss broader deployment of CADRE as integrated infrastructure for Australian data custodians and repositories.
title: ADCO, Ordre cistercien : comptes (1499-1515) (11 H 1162), f. 00398
Creators: name: de la Côte-d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2019
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: comptes

description: Ordre cistercien : comptes (1499-1515), Archives départementales de la Côte-d'Or, (11 H 1162). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Ordre cistercien : comptes (1499-1515), Archives départementales de la Côte-d'Or, (11 H 1162), f. 00398, in Projet CBMA - Corpus Burgundiae Medii Aevi \[Ressource en ligne\], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Nonpathogenic leaf-colonizing bacteria elicit pathogen-like responses in a colonization density-dependent manner
Creators: name: Miebach, Moritz
name: Faivre, Léa
name: Schubert, Daniel
name: Jameson, Paula
name: Remus-Emsermann, Mitja
Publisher: name: Freie Universität Berlin
Year: 2024
Subjects: subject: Arabidopsis
subject: chromatin state analysis
subject: microbiota
subject: phyllosphere
subject: Pseudomonas
subject: transcriptomics
subject: 500 Naturwissenschaften und Mathematik::570 Biowissenschaften; Biologie::570 Biowissenschaften; Biologie

description: Leaves are colonized by a complex mix of microbes, termed the leaf microbiota. Even though the leaf microbiota is increasingly recognized as an integral part of plant life and health, our understanding of its interactions with the plant host is still limited. Here, mature, axenically grown Arabidopsis thaliana plants were spray inoculated with six diverse leaf-colonizing bacteria. The transcriptomic changes in leaves were tracked over time and significant changes in ethylene marker (ARL2) expression were observed only 2–4 days after spray inoculation. Whole-transcriptome sequencing revealed that 4 days after inoculation, leaf transcriptional changes to colonization by nonpathogenic and pathogenic bacteria differed in strength but not in the type of response. Inoculation of plants with different densities of the nonpathogenic bacterium Williamsia sp. Leaf354 showed that high bacterial titers resulted in disease phenotypes and led to severe transcriptional reprogramming with a strong focus on plant defense. An in silico epigenetic analysis of the data was congruent with the transcriptomic analysis. These findings suggest (1) that plant responses are not rapid after spray inoculation, (2) that plant responses only differ in strength, and (3) that plants respond to high titers of nonpathogenic bacteria with pathogen-like responses.
Additional file 1: of Hippocampus-sparing radiotherapy using volumetric modulated arc therapy (VMAT) to the primary brain tumor: the result of dosimetric study and neurocognitive function assessment
Creators: name: Kim, Kyung
name: Wee, Chan
name: Seok, Jin-Yong
name: Hong, Joo
name: Jin-Beom Chung
name: Keun-Yong Eom
name: Jae-Sung Kim
name: Chae-Yong Kim
name: Park, Young
name: Kim, Yu
name: Kim, In
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Neuroscience
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer

description: Table S1. Association between hippocampus dose and neurocognitive test deterioration. (DOCX 20Â kb)
On functors enumerating structures
Creators: name: Rossegger, Dino
Publisher: name: arXiv
Year: 2017
Subjects: subject: Logic (math.LO)
subject: FOS: Mathematics
subject: 03C57

description: We study a new notion of reduction between structures called enumerable functors related to the recently investigated notion of computable functors. Our main result shows that enumerable functors and effective interpretability with the equivalence relation computable are equivalent. We also obtain results on the relation between enumerable and computable functors.
description: 16 pages v2: corrected typos
Additional file 1: of Evaluating different breast tumor progression models using screening data
Creators: name: Åsbjørn Westvik
name: Weedon-Fekjær, Harald
name: Mæhlen, Jan
name: Liestøl, Knut
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Figure S1. Comparison of results based on static population. Figure S2. Results of running simulation on basic model using clinical dataset from Oslo University Hospital (blue) versus clinical dataset from Haukeland University Hospital in Bergen (green. Figure S3. Clinically detected cancers, A = Haukeland University Hospital, B = Oslo University Hospital, Ullevål. Figure S4. Prevalence screening detected cancers. Size distribution. Figure S5. Comparison of the size distributions of tumors detected at the prevalence screening (red) and in pre-screening years (data from Oslo University Hospital in blue, from Haukeland University Hospital in green). Figure S6. Data from NordCan, with historic incidence-data for various cohorts at specific ages. Figure S7. Expected and observed incidences in the age groups 50–69 applying different rates of increased incidence over time. Figure S8. Incidences in the age groups 50–69 where we have varied the probability of getting a 1 mm cancer depending on age. Figure S9. Comparison of results when simulating different screening attendance scenarios. Figure S10. Observed female breast cancer incidence in Norway from 1953 to 2013. Figure S11. Observed incidence in the AORH-counties from 1990 to 2009. Figure S12. Simulation results with dormant tumors which are not detected clinically. Figure S13. Effect of adding two hypothetical rounds of opportunistic screening (1992–1993 and 1994–1995). Table S1. Table of parameters used in log-normal function to reproduce Fig. 2 in the main article. Table S2. Time in years it takes for a tumor to advance from 10 mm to 20 mm using different growth estimates. Table S3. The parameters used for the lognormal growth distributions. Table S4. Parameters of the logistic sensitivity functions after calibration (parameters are in the format [mean,spread]). (DOCX 458 kb)
Predicting compliance: Leveraging chat data for supervised classification in experimental research
Creators: name: Hausladen, Carina I.
name: Fochmann, Martin
name: Mohr, Peter
Publisher: name: Freie Universität Berlin
Year: 2024
Subjects: subject: Chat data
subject: Supervised classification
subject: Experimental research
subject: Tax evasion
subject: Compliance
subject: 300 Sozialwissenschaften::330 Wirtschaft::330 Wirtschaft

description: Behavioral and experimental economics have conventionally employed text data to facilitate the interpretation of decision-making processes. This paper introduces a novel methodology, leveraging text data for predictive analytics rather than mere explanation. We detail a supervised classification framework that interprets patterns in chat text to estimate the likelihood of associated numerical outcomes. Despite the unique advantages of experimental data in correlating textual and numerical information for predictive modeling, challenges such as limited sample sizes and potential data skewness persist. To address these, we propose a comprehensive methodological framework aimed at optimizing predictive modeling configurations, particularly in small experimental behavioral research datasets. We also present behavioral experimental data from a preregistered tax evasion game (n=324), demonstrating that chat behavior is not influenced by experimenter demand effects. This establishes chat text as an unbiased variable, enhancing its validity for prediction. Our findings further indicate that beliefs about others’ dishonesty, lying attitudes, and risk preferences significantly impact compliance decisions.
Foundations of an effective-one-body model for coalescing binaries on eccentric orbits
Creators: name: Hinderer, Tanja
name: Babak, Stanislav
Publisher: name: arXiv
Year: 2017
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We develop the foundations of an effective-one-body (EOB) model for eccentric binary coalescences that includes the conservative dynamics, radiation reaction, and gravitational waveform modes from the inspiral and the merger-ringdown signals. We use the same approach as is commonly employed in black-hole perturbation theory by introducing a relativistic parameterization of the dynamics that is defined by the orbital geometry and consists of a set of phase variables and quantities that evolve only due to gravitational radiation reaction. Specializing to nonspinning binaries, we derive the EOB evolution equations and compute the binary's radiative multipole moments that determine the gravitational waves through a decomposition into the fundamental frequencies of the motion. The major differences between our treatment and the quasi-Keplerian approach often used in post-Newtonian (PN) calculations are that the orbital parameters describe strong-field dynamics, and that expressing the multipole moments in terms of the frequencies simplifies the calculations and also results in an unambiguous orbit-averaging operation. While our description of the conservative dynamics is fully relativistic, we limit explicit derivations in the radiative sector to 1.5PN order for simplicity. This already enables us to establish methods for computing both instantaneous and hereditary contributions to the gravitational radiation in EOB coordinates that have straightforward extensions to higher PN order. The weak-field, small eccentricity limit of our results for the orbit-averaged fluxes of energy and angular momentum agrees with known PN results when expressed in terms of gauge-invariant quantities. We further address considerations for the numerical implementation of the model and the completion of the waveforms to include the merger and ringdown signals, and provide illustrative results.
description: 25 pages, 8 figures, small changes to match published version