cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Mycotretus pusillus Lacordaire 1842
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycotretus
Mycotretus pusillus

description: 196. Mycotretus pusillus Lacordaire, 1842
Mycotretus pusillus Lacordaire, 1842: 188. Type locality: “Cayenne” [French Guiana].
Mycotretus pusillus – Crotch 1876: 456. — Gemminger & Harold 1876: 3694. — Kuhnt 1909: 72; 1911: 52. — Blackwelder 1945: 467. — Alvarenga 1994: 33. — Skelley 1998b: 17.
Primary type
Lectotype, here designated (Fig. 35B)
FRENCH GUIANA • “Cayen [handwritten] \ TYPE. [printed] pusillus R [handwritten] \ TYPE [blue label, printed] \ LECTOTYPE [printed] Mycotretus pusillus Lacordaire, 1842 [red label, handwritten]”; UMZC.
Other specimens examined
BRAZIL • 1 ♂ (dissected); “Coleção M. Alvarenga [printed] \ Jacareacanga, Pará Brasil, XII–1968, M.Alvarenga [printed] \ Malaise [handwritten] \ 1622 [printed] \ Mycotretus 184 [handwritten] \ pusillus Lac., 1842 [handwritten]”; MNRJ.
Distribution
French Guiana, North Brazil.
Remarks
Mycotretus pusillus resembles M. pygmaeus Lacordaire (Fig. 35C) in body shape, coloration and morphology of male genitalia, but differs from the latter in the more elongated penile flagellum.
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on pages 151-152, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
Additional file 10: Figure S6. of Whole transcriptomic analysis of the plant-beneficial rhizobacterium Bacillus amyloliquefaciens SQR9 during enhanced biofilm formation regulated by maize root exudates
Creators: name: Zhang, Nan
name: Dongqing Yang
name: Dandan Wang
name: Youzhi Miao
name: Jiahui Shao
name: Zhou, Xuan
name: Zhihui Xu
name: Li, Qing
name: Haichao Feng
name: Shuqing Li
name: Qirong Shen
name: Ruifu Zhang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Comparison of different gene expression patterns regulated by root exudates at 24Â h (A) and 48Â h (B) post-inoculation. Every point represents a gene with different expression levels (fragments per kilobase unique exon sequence per megabase of library mapped; FPKM) in two transcriptomes. Blue color denotes genes with no significant differences between the two transcriptomes, red means up-regulation and green means down-regulation. (DOCX 228 kb)
Additional file 1: Figure S1. of Whole transcriptomic analysis of the plant-beneficial rhizobacterium Bacillus amyloliquefaciens SQR9 during enhanced biofilm formation regulated by maize root exudates
Creators: name: Zhang, Nan
name: Dongqing Yang
name: Dandan Wang
name: Youzhi Miao
name: Jiahui Shao
name: Zhou, Xuan
name: Zhihui Xu
name: Li, Qing
name: Haichao Feng
name: Shuqing Li
name: Qirong Shen
name: Ruifu Zhang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Plant Biology

description: Effects of concentrations and incubation times of maize root exudates on biofilm formation of SQR9. (A) Influence of different concentrations of maize root exudates on SQR9 biofilm formation. Bars indicate the standard errors of the means from four replicates. Columns with different letters are statistically different according to the Duncan’s multiple range tests (P
Mycotretus pygmaeus Lacordaire 1842
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycotretus
Mycotretus pygmaeus

description: 197. Mycotretus pygmaeus Lacordaire, 1842
Mycotretus pygmaeus Lacordaire, 1842: 156. Type locality: “Cayenne” [French Guiana].
Mycotretus pygmaeus – Crotch 1876: 455. — Gemminger & Harold 1876: 3694. — Gorham 1888: 62. — Kuhnt 1909: 72; 1911: 52. — Bruch 1914: 384. — Curran 1941: 286. — Mader 1942: 172; 1951: 211. — Blackwelder 1945: 467. — Guérin 1948: 20. — Alvarenga 1994: 33. — Skelley 1998b: 17. — McHugh & Chaboo 2015: 278.
Primary type
Lectotype, here designated (Fig. 35C)
FRENCH GUIANA — “Cayenne [handwritten] \ Pygmaeus Lac [handwritten] \ Type [handwritten] \ Ex-Musaeo Mniszech [printed] \ LECTOTYPE [printed] Mycotretus pygmaeus Lacordaire, 1842 [red label, handwritten]”; MNHN.
Other specimens examined
FRENCH GUIANA • 1 spec.; “ D. Guerin. [handwritten]”; MRSN • 1 spec.; “Cayenne Lacordaire. [handwritten] \ TYPE. [printed, crossed out] pygmaeus coll. Reiche. [handwritten]”; UMZC.
BRAZIL • 1 ♂ (dissected); “Coleção M. Alvarenga [printed] \ Jacaré P.N.XINGU, M. Grosso Brasil, XI–1961, Alvarenga e Werner [printed] \ DZUP 371368 [printed]”; DZUP • 1 ♀; “Coleção M. Alvarenga [printed] \ SERRA do NAVIO, Terr. Amapá BRASIL, IX–1957, K. Lenko leg. [printed] \ DZUP 371396 [printed]”; DZUP • 1 ♂ (dissected); “Coleção M. Alvarenga [printed] \ CHAPADA GUIMARÃES, Mato Grosso Brasil, XI–1963, Alvarenga e Werner [printed] \ DZUP 371440 [printed]”; DZUP.
Distribution
From Mexico to Argentina.
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on page 152, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
MOESM1 of Association between insulin receptor substrate-1 polymorphisms and high platelet reactivity with clopidogrel therapy in coronary artery disease patients with type 2 diabetes mellitus
Creators: name: Dingyu Zhang
name: Xiaolin Zhang
name: Liu, Dan
name: Tengfei Liu
name: Wenzhi Cai
name: Chenghui Yan
name: Yaling Han
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Figure S1. Flow diagram of the study cohorts. Table S1. Primers, PCR product lengths, and reaction conditions of selected tagSNPs. Table S2. Information on genotyped SNPs of IRS-1. Table S3. Genotypes and allele frequencies of IRS-1 polymorphisms according to platelet activity in non-DM patients. Table S4. Linkage disequilibrium measurements between SNP pairs of eight tag SNPs of the IRS-1 gene. Table S5. Genotypes and allele frequencies of IRS-1 polymorphisms in DM and non-DM patients. Table S6. Baseline demographic data and clinical characteristics according to the rs13431554.
Additional file 6: Figure S3. of Whole transcriptomic analysis of the plant-beneficial rhizobacterium Bacillus amyloliquefaciens SQR9 during enhanced biofilm formation regulated by maize root exudates
Creators: name: Zhang, Nan
name: Dongqing Yang
name: Dandan Wang
name: Youzhi Miao
name: Jiahui Shao
name: Zhou, Xuan
name: Zhihui Xu
name: Li, Qing
name: Haichao Feng
name: Shuqing Li
name: Qirong Shen
name: Ruifu Zhang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Phylogenetic tree drawn from 1,044 conserved genes of the core genomes of 18 Bacillus genomes. The maximum-parsimony tree was obtained in PAUP*4.0b10 via a heuristic search (nâ  =â  1,000) with the random addition of sequences and the TBR tree-swapping algorithm. Bootstrap values of > 75Â % were considered significant. Bacillus cereus ATCC 14579 was used as the outgroup. (DOCX 55 kb)
The role of small leucine-rich proteoglycans in non-scarring human oral mucosal wound healing
Creators: name: Honardoust, Dariush
Publisher: name: University of British Columbia
Year: 2008

description: Small leucine-rich proteoglycans (SLRPs) decorin, biglycan, fibromodulin and lumican are extracellular matrix (ECM) molecules that regulate collagen fibrilogenesis, cell functions and activity of transforming growth factor-P (TGF-ß). Thus, SLRPs may play critical roles in wound healing. In contrast to dermal wounds, gingival wounds regenerate with minimal scaring. However, the cellular and molecular mechanisms involved in this processes are not known. The aim of this study was to analyze the abundance of SLRPs, TGF-ß and Endo180, the major collagen endocytosis receptor in fibroblasts, in normal unwounded gingiva and during wound healing. The association of Endo180 with decorin was also investigated during wound healing. We hypothesized that compared to normal unwounded tissue, gingiva shows distinct localization and altered accumulation of SLRPs, TGF-ß and Endo180 during wound healing. To further analyze functions of SLRPs, we studied interaction of decorin with cultured gingival fibroblasts. Double immunostaining was used to study the localization of SLRPs, Endo180 or TGF-ß in tissue sections from normal human gingiva and up to 60 days after experimental wounding. The expression of Endo180 in cultured fibroblasts and keratinocytes was studied by immunoblotting and reverse transcriptase-polymerase chain reaction. To study interaction of cultured fibroblasts with decorin and decorin-induced signaling we used immunoblotting, function-blocking antibodies, pharmacological inhibitors, quantitative immunocytochemistry and RNA interference. In normal gingiva and during wound healing, SLRPs localized to collagen in a sitespecific manner. The immunoreactivity of SLRPs, TGF-ß1, TGF-ß3 and Endo180 was spatially and temporally regulated in myofibroblasts, pericytes, macrophages, endothelial and epithelial cells during wound healing. During wound healing, decorin colocalized with Endo180 in myofibroblasts. In cultured fibroblasts, decorin induced phosphorylation of distinct receptor tyrosine kinases leading to formation of reactive oxygen species (ROS) via the PI3K/mTOR signaling pathway. This was necessary for decorin endocytosis mainly via the clathrin-pathway. SLRPs may play a role in gingival wound re-epithelialization, collagen fibrilogenesis, ECM remodeling and cell signaling. Specifically, increased abundance of fibromodulin, decorin and TTGF-ß3 relative toTGF-ß1 may contribute to the reduced scaring during gingival wound healing. Decorin may interact with Endo180 to modulate its function and regulates cell signaling by inducing ROS formation.
Additional file 8: Figure S4. of Whole transcriptomic analysis of the plant-beneficial rhizobacterium Bacillus amyloliquefaciens SQR9 during enhanced biofilm formation regulated by maize root exudates
Creators: name: Zhang, Nan
name: Dongqing Yang
name: Dandan Wang
name: Youzhi Miao
name: Jiahui Shao
name: Zhou, Xuan
name: Zhihui Xu
name: Li, Qing
name: Haichao Feng
name: Shuqing Li
name: Qirong Shen
name: Ruifu Zhang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Orthologous genes in Bacillus subtilis 168 and Bacillus amyloliquefaciens SQR9 and FZB42. Lines in blue represent orthologs between SQR9 and FZB42 that were not found in 168, while lines in red represent orthologs between SQR9 and 168 that were not found in FZB42. Highlight-1 is genomic island 3 of SQR9, which was only found in SQR9, and highlight-2 shows the prophage (genomic island 7, 8, and 9) only shared by SQR9 and 168. (DOCX 378 kb)
MOESM1 of Activation of lignocellulosic biomass for higher sugar yields using aqueous ionic liquid at low severity process conditions
Creators: name: Ramakrishnan Parthasarathi
name: Sun, Jian
name: Tanmoy Dutta
name: Sun, Ning
name: Pattathil, Sivakumar
name: N. Murthy Konda
name: Peralta, Angelo
name: Simmons, Blake
name: Singh, Seema
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: FOS: Biological sciences

description: Additional file 1: Supporting Table S1: Detailed list of cell wall glycan-directed monoclonal antibodies (mAbs) used for glycome profiling analyses. The groupings of antibodies are based on a hierarchical clustering of ELISA data generated from a screen of all mAbs against a comprehensive panel of plant polysaccharide preparations that clusters mAbs according to the predominant polysaccharides that they recognize. The majority of listings link to the WallMabDB plant cell wall monoclonal antibody database ( http://www.wallmabdb.net ) that provides detailed descriptions of each mAb, including immunogen, antibody isotype, epitope structure (to the extent known), supplier information, and related literature citations. Figure S1. X-ray diffraction patterns and CrI (%) values of untreated Avicel, switchgrass solids and pretreated switch grass by [TBA][OH] at 50Â Â°C pretreatment conditions. Figure S2. Normalized SEC chromatograms of EMAL- switchgrass and L1. Figure S3. HSQC spectra correspond to the color-coded substructures. Figure S4. Relative abundances in lignin interunit linkages in switchgrass EMAL and L1. Figure. S5. Optimized geometries of dilignol with IL complexes. (DOCX 697Â kb).
Mycotretus quadrinus Lacordaire 1842
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycotretus
Mycotretus quadrinus

description: 198. Mycotretus quadrinus Lacordaire, 1842
Mycotretus quadrinus Lacordaire, 1842: 155 (Fig. 35D). Type locality: “ Brésil ”.
Mycotretus quadrinus – Crotch 1876: 455 [junior synonym]. — Alvarenga 1994: 29.
Primary type
Lectotype, here designated (Fig. 35D)
BRAZIL • “TYPE. [printed] quadrinus Ch [handwritten] \ TYPE [blue label, printed] \ LECTOTYPE [printed] Mycotretus quadrinus Lacordaire, 1842 [red label, handwritten]”; UMCZ.
Remarks
Synonym of M. minutus Duponchel, 1825 (Fig. 13E, see above).
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on page 152, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
Additional file 11: Table S5. of Whole transcriptomic analysis of the plant-beneficial rhizobacterium Bacillus amyloliquefaciens SQR9 during enhanced biofilm formation regulated by maize root exudates
Creators: name: Zhang, Nan
name: Dongqing Yang
name: Dandan Wang
name: Youzhi Miao
name: Jiahui Shao
name: Zhou, Xuan
name: Zhihui Xu
name: Li, Qing
name: Haichao Feng
name: Shuqing Li
name: Qirong Shen
name: Ruifu Zhang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Comparison of fold-changes of differentially expressed genes obtained by Illumina RNA-Seq and real-time PCR. The fold changes revealed by real-time PCR of the selected genes were determined based on the threshold cycle (Ct) values and 2-â łâ łCt method. Three replicates were performed for each gene. (DOCX 15 kb)
Additional file 19: Figure S9. of Whole transcriptomic analysis of the plant-beneficial rhizobacterium Bacillus amyloliquefaciens SQR9 during enhanced biofilm formation regulated by maize root exudates
Creators: name: Zhang, Nan
name: Dongqing Yang
name: Dandan Wang
name: Youzhi Miao
name: Jiahui Shao
name: Zhou, Xuan
name: Zhihui Xu
name: Li, Qing
name: Haichao Feng
name: Shuqing Li
name: Qirong Shen
name: Ruifu Zhang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Neighbor-joining phylogenetic tree based on partial gyrA (A) and cheA (B) nucleotide sequences. The consensus tree was reconstructed from 1,000 trees according to the extended majority rule (SEQBOOT program). Bootstrap values >50Â % (1,000 repetitions) are indicated at branch points. (DOCX 136 kb)
Additional file 6: Table S5. of Genome-wide investigation and expression analyses of the pentatricopeptide repeat protein gene family in foxtail millet
Creators: name: Liu, Jia-Ming
name: Zhao-Shi Xu
name: Pan-Pan Lu
name: Li, Wei-Wei
name: Chen, Ming
name: Guo, Chang-Hong
name: Ma, You-Zhi
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 60506 Virology

description: The Ka/Ks ratios and the estimated divergence times for putatively tandemly duplicated SiPPR genes. (DOCX 20Â kb)
Intonation and Focus in Nte?kepmxcin (Thompson River Salish)
Creators: name: Koch, Karsten
Publisher: name: University of British Columbia
Year: 2008

description: In this dissertation, I examine the marking of focus and givenness in Nte?kepmxcin (Thompson River Salish). The focus is, roughly, the answer to a wh-question, and is highlighted by the primary sentential accent in stress languages like English. This has been formalized as the Stress-Focus Correspondence Principle. Given material is old information, and is de-accented in languages like English. Nte?kepmxcin is a stress language, but marks focus structurally. However, I argue that the structure has a prosodie motivation: the clause is restructured such that the focus is leftmost in the intonational phrase. It follows that Salish focus structures lack the special semantics that motivates the use of English structural focus (clefts). As a theoretical contribution, I show that the Stress-Focus Correspondence Principle does not account for focus marking in all stress languages, nor does the "distress-given" generalization account for the marking of given information. This is because focus surfaces leftmost, while the nuclear stress position is rightmost. Instead of "stress-focus", I propose that alignment with prosodie phrase edges is the universally common thread in focus marking. This mechanism enables listeners to rapidly recover the location of the focus, by identifying coarse-grained phonological categories (p-phrases and i-phrases). In Thompson River Salish, the focus is associated with the leftmost p-phrase in the matrix intonational phrase. The analysis unifies the marking of focus across languages by claiming that focus is always marked prosodically, by alignment to a prosodie category. The study combines syntactic analysis of focus utterances with their phonetic realization and semantic characteristics. As such, this dissertation is a story about the interfaces. This research is based on a corpus of conversational data as well as single sentence elicitations, all of which are original data collected during fieldwork. The second contribution of this dissertation is thus methodological: I have developed various fieldwork techniques for collecting both spontaneous and scripted conversational discourses. The empirical contribution that results is a collection of conversational discourses, to add to the single speaker traditional texts already recorded for Nte?kepmxcin.
Rerum domesticarum externarumque notatu dignarum continuatio
Creators: name: Staal, Johann Baptist vom
Publisher: name: [s.n.]
Year: 1676

description: Die Tagebuchnotizen umfassen die Zeitspanne von 1266-1693. Genealogie der Familie von Staal und Ephemeriden.
description: Fotografische Wiedergabe des Bandes: ZBS S I 357
description: von Arnim Ankauf 19. Februar 1949 A 1949/321 Zentralbibliothek Solothurn CHF 7000.-- zusammen mit ZBS S II 51/1
description: Deutsch
description: Latein
description: 20. Jahresbericht der Zentralbibliothek Solothurn über das Jahr 1949, S. 3-5.
description: 18. Jahresbericht der Zentralbibliothek Solothurn über das Jahr 1947, S. 3.
description: Verzeichnung=Description=Inventaire Juli 2011 sf Aufgrund des Katalogs von Erhard Flury. Typoskript in ZB Solothurn.
Two moments preserving sectional approach for an enzymatic coagulation equation
Creators: name: Ansari, Zeeshan
name: Rae, Mitchell
name: Singh, Mehakpreet
Publisher: name: University of Limerick
Year: 2024
Subjects: classificationCode: 40
subject: Engineering

description: The coagulation process has found extensive applications in monitoring the evolution of aerosol and granule preparation in pharmaceutical sciences, blood clotting in biology, and cheese manufacturing due to the enzymes in the dairy industry. Among these, modeling the cheese manufacturing process is more challenging due to three indistinguishable sub-mechanisms: (a) enzymatic proteolysis, (b) coagulation, and (c) gelation, which occurs during the enzymatic coagulation of milk. The current study focuses on developing a sectional approach based on the cell average technique for monitoring the evolution of enzyme-induced coagulation of paracasein micelles over time. The proposed technique preserves two integral properties, such as total number and total volume in the system. The mathematical formulation of the proposed technique is very simple, easy to code, and has a robust implementation on any uniform and non-uniform grids. Due to the unavailability of the analytical solutions of the number density functions, the validation of the new proposed approach is done by extracting the new series solutions through the modification of the Homotopy perturbation method [Kaur et al., J. Phys. A 52(38), 385201 (2019)] and exact integral moments for several kernels. It has been shown that the new approach not only estimates the first two integral moments accurately but also computes the second-order moment with high precision without any specific measures. Moreover, domains of varying size grids are taken into account to analyze the convergence behavior of the average-size paracasein micelles formed in the system based on the zeroth and first moments.
Additional file 16: Table S14. of Genome-wide investigation and expression analyses of the pentatricopeptide repeat protein gene family in foxtail millet
Creators: name: Liu, Jia-Ming
name: Zhao-Shi Xu
name: Pan-Pan Lu
name: Li, Wei-Wei
name: Chen, Ming
name: Guo, Chang-Hong
name: Ma, You-Zhi
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: PPR genes differentially expressed under drought treatment (20 % PEG 6000), salt treatment (250 mM NaCl), cold treatment (4 °C), and treatment with 100 μM ABA, at the 0, 6, and 24 h time points. (DOCX 19 kb)
Mycotretus quattuordecimguttatus Lacordaire 1842
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycotretus
Mycotretus quattuordecimguttatus

description: 199. Mycotretus quattuordecimguttatus Lacordaire, 1842
Mycotretus quattuordecimguttatus Lacordaire, 1842: 163. Type locality: Colombia (Fig. 35E).
Mycotretus bisseptemguttatus Crotch, 1876: 441. Type locality: “Cayenne” [Cayenne, French Guiana] syn. nov. (Fig. 4D)
Mycotretus quattuordecimguttatus – Crotch 1876: 439. — Gemminger & Harold 1876: 3694. — Kuhnt 1909: 71; 1911: 53. — Deelder 1942: 89. — Blackwelder 1945: 467. — Alvarenga 1994: 33. — Skelley 1998b: 15.
Mycotretus bisseptemguttatus – Gemminger & Harold 1876: 3692. — Kuhnt 1909: 71; 1911: 48. — Blackwelder 1945: 466. — Alvarenga 1994: 21.
Primary type
Lectotype, here designated (Fig. 35E)
COLOMBIA • “TYPE [blue label, printed] \ TYPE. [printed] 14-guttatus R [handwritten] \ Colomb [handwritten] \ LECTOTYPE [printed] Mycotretus quatuordecimguttatus Lacordaire, 1842 [red label, handwritten]”; UMZC.
Other specimens examined
BRAZIL • 1 ♀ (dissected); “Coleção M. Alvarenga [printed] \ Homeotipo [red label, printed] \ XI-60, Ter. Amapá, Serra do Navio, R. Bicelli col. [handwritten] \ Comparado com tipo [printed] Mycotretus quattuordecimguttatus; Lac, 1842 [handwritten] M. Alvarenga det. 1971 [printed] \ Comparado com tipo [printed] Mycotretus bisseptemguttatus Crotch, 1876 [handwritten] M. Alvarenga det. 1971 [printed] \ 1827 [printed]”; MNRJ.
Remarks
Mycotretus bisseptemguttatus Crotch differs from M. quattuordecimguttatus Lacordaire only in the circular elytral spots, which are comparatively larger in the former species.
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on page 154, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
Bericht (exzerptenhaft) über eidgen. Dinge
Helvetica
Creators: name: Polanus von Polansdorf, Amandus
Publisher: name: [s.n.]
Year: 1597

description: Der Kardinal von Konstanz verlangt Behandlung des Thurgauerfalles an der Badener Tagsatzung. - In Basel: Gegner von J.J. Grynaeus wollen die alten Bilder etc. erhalten wissen; Gr. kämpft dagegen. (Gustav Meyer, 1946/1947)
description: [Amandus Polanus à Polansdorf]
description: Öffentliche Bibliothek der Universität Basel
description: Lateinisch
description: Verzeichnung=Description=Inventaire Feb. 2014 Rekatalogisierung nach Briefkatalog und Vorlage
description: Verzeichnung=Description=Inventaire Januar 2024 HAN-Katalogisierungsregeln Revision nach Vorlage nni
Metabelba Grandjean 1936
Creators: name: Miko, Jan Mourek Ladislav
name: Bernini, Fabio
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Sarcoptiformes
Damaeidae
Metabelba

description: Genus Metabelba Grandjean, 1936
Type species. Damaeus papillipes Nicolet, 1855
Diagnosis. Small to middle-sized Damaeidae (body length usually 375-560 μm, rarely over 700 μm), coloured various shades of brown or yellowish. Propodolateral apophysis (P) present or absent. Spinae adnatae absent. Setal formula of trochanters 1-1-4-3 or 1-1-3-3, femora I and II with 10 (rarely 9) setae, femora III and IV with 9 (rarely 8) setae. Setal formula of genua 4(1)-4(1)-4(1)-4. Solenidia on tibiae II and III coupled with a companion seta (d), seta d on tibia IV absent, the respective solenidion on tibia IV long, free, tactile. Ventral accessory seta v2´absent from tarsi I-IV, setal formula of tarsi (famulus included, solenidia in parentheses) 20(2)-17(2)-17(0)-14(0). Famulus in all developmental stages "normal", setiform, emergent.
description: Published as part of Miko, Jan Mourek Ladislav & Bernini, Fabio, 2011, Taxonomy of European Damaeidae (Acari: Oribatida) IV. Partial revision of Metabelba Grandjean, 1936 with proposal of one new subgenus, one new species and redescriptions of two known species, pp. 1-42 in Zootaxa 3099 on page 4, DOI: 10.5281/zenodo.279150
Additional file 2: Table S2. of Genome-wide investigation and expression analyses of the pentatricopeptide repeat protein gene family in foxtail millet
Creators: name: Liu, Jia-Ming
name: Zhao-Shi Xu
name: Pan-Pan Lu
name: Li, Wei-Wei
name: Chen, Ming
name: Guo, Chang-Hong
name: Ma, You-Zhi
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: PPR genes in Selaginella. The domain/class, open reading frame length, predicted protein length, chromosomal location, number of introns within the ORF, and the subcellular localization of the PPR proteins of each of these genes are listed. (DOCX 194Â kb)
Mycotretus rhodosomus Lacordaire. Therefore 1842
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycotretus
Mycotretus rhodosomus

description: 200. Mycotretus rhodosomus Lacordaire, 1842
Mycotretus rhodosomus Lacordaire, 1842: 166. Type locality: “ Brésil ”.
Brachysphaenus (Iphiclus) nigromaculatus Kuhnt, 1909: 27. Type locality: “ Mexico ” syn. nov. (Fig. 25B).
Mycotretus rhodosomus – Crotch 1876: 444. — Gemminger & Harold 1876: 3694. — Kuhnt 1909: 72; 1911: 53. — Blackwelder 1945: 467. — Guérin 1948: 20. — Alvarenga 1994: 34. — Skelley 1998b: 16. — Pecci-Maddalena et al. 2021a: 955.
Brachysphaenus (Iphiclus) nigromaculatus Kuhnt 1911: 17. — Blackwelder 1945: 459.
Mycotretus nigromaculatus – Delkeskamp 1939: 27. — Alvarenga 1994: 30.
Primary type
Lectotype, here designated (Fig. 35F)
MEXICO • “TYPE [blue label, printed] \ TYPE. [printed] rhodosomus Ch [handwritten] \ LECTOTYPE [printed] Mycotretus rhodosomus Lacordaire, 1842 [red label, handwritten]”; UMZC.
Other specimens examined
BRAZIL • 1 ♂ (dissected); “ Rio de janeiro, 2/1944, O. Braga [handwritten] \ Mycotretus rhodosomus Lac [handwritten] J. Guerin. det. 194[printed]8[handwritten]”; MNRJ • 1 ♀ (dissected); “Coleção M. Alvarenga [printed] \ Homeotipo [printed] \ Rio de janeiro, 2/1944, O. Braga [handwritten] \ 1825 [printed] \ Mycotretus rhodosomus Lac [handwritten] J. Guerin. det. 194 [printed]8[handwritten] \ Comparado com tipo [printed] Mycotretus rhodosomus Lac, 1842 [handwritten] M. Alvarenga det. 1971 [printed]”; MNRJ.
Distribution
Mexico [?], Southeast Brazil.
Remarks
1) Although the lectotype of M. nigromaculatus (Kuhnt) was not dissected, its general morphology and colour pattern are identical to those of the lectotype of M. rhodosomus Lacordaire. Therefore, here we synonymize M. nigromaculatus (Kuhnt) under M. rhodosomus Lacordaire. 2) We observed that the type locality “ Mexico ” of M. nigromaculatus cited by Kuhnt (1909) is likely wrong. Lacordaire (1842) mentioned that the type locality of M. rhodosomus is “ Brazil ” and all individuals examined by us are from Southeast Brazil. Aside from that, there is no mention of the name “ M. rhodosomus ” in Biologia Centrali-Americana (see Gorham 1888), a work for which hundreds of erotylids from Central America and Mexico were studied.
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on pages 154-155, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
Metabelba (Metabelba) Grandjean 1936
Creators: name: Miko, Jan Mourek Ladislav
name: Bernini, Fabio
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Sarcoptiformes
Damaeidae
Metabelba

description: Subgenus Metabelba (Metabelba) Grandjean, 1936
Type species: Metabelba papillipes (Nicolet, 1855)
Diagnosis. Metabelba with propodolateral apophysis (P) present, well developed.
Other included species: Metabelba propexa (Kulczynski, 1902); Metabelba cremersi van der Hammen, 1952 (= junior synonym of Metabelba papillipes according to van der Hammen & Strenzke, 1953); Metabelba pulverosa Strenzke, 1953 (described in van der Hammen & Strenzke, 1953); Metabelba singularis, Mihelčič 1964; Metabelba rara Bulanova-Zachvatkina, 1965; Metabelba rohdendorfi Bulanova-Zachvatkina, 1965; Metabelba obtusa Hammer, 1966 (= probable junior synonym of M. papillipes according to Norton 1979a); Metabelba parapulverosa Moritz, 1966; Metabelba glabriseta Mahunka, 1982.
description: Published as part of Miko, Jan Mourek Ladislav & Bernini, Fabio, 2011, Taxonomy of European Damaeidae (Acari: Oribatida) IV. Partial revision of Metabelba Grandjean, 1936 with proposal of one new subgenus, one new species and redescriptions of two known species, pp. 1-42 in Zootaxa 3099 on page 4, DOI: 10.5281/zenodo.279150
Additional file 13: Table S12. of Genome-wide investigation and expression analyses of the pentatricopeptide repeat protein gene family in foxtail millet
Creators: name: Liu, Jia-Ming
name: Zhao-Shi Xu
name: Pan-Pan Lu
name: Li, Wei-Wei
name: Chen, Ming
name: Guo, Chang-Hong
name: Ma, You-Zhi
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: The PPRs with putative auxiliary motifs or domains in moss, Selaginella, Arabidopsis, foxtail millet, and rice. The domain/class, number of introns within the ORF, and the subcellular localization of the PPR proteins are provided for each PPR gene. (DOCX 29Â kb)
Mycotretus rufilabris
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycotretus
Mycotretus rufilabris

description: 201. Mycotretus rufilabris (Lacordaire, 1842)
Tritoma rufilabris Lacordaire, 1842: 222. Type locality: “ Brésil ”.
Mycotretus rufilabris – Crotch 1876: 458. — Gemminger & Harold 1876: 3694. — Kuhnt 1909: 70; 1911: 53. — Blackwelder 1945: 467. — Alvarenga 1994: 34. — Pecci-Maddalena et al. 2021b: 3099.
Type specimen
Not located.
Other specimens examined
BRAZIL • 1 spec. (Fig. 36A); “Coleção M. Alvarenga [printed] \ CORCOVADO Rio Guanabara Brasil [printed] XI. 1958 [handwritten] Alvarenga e Seabra [printed] \ Mycotretus rufilabris (Lac. 1842) [handwritten] M. Alvarenga det. [printed] 1984 [handwritten]”; MNRJ.
Distribution
Brazil.
Remarks
There is an unlabeled specimen in the Brême collection (box “EROTYLIENS–Engidiformes, 1H–16 [handwritten]”) which may be the type specimen of M. rufilabris, but it has not been examined by us.
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on page 155, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
Additional file 1: of BK virus encephalopathy and sclerosing vasculopathy in a patient with hypohidrotic ectodermal dysplasia and immunodeficiency
Creators: name: Darbinyan, Armine
name: Major, Eugene
name: Morgello, Susan
name: Holland, Steven
name: Ryschkewitsch, Caroline
name: Monaco, Maria
name: Naidich, Thomas
name: Bederson, Joshua
name: Malaczynska, Joanna
name: Ye, Fei
name: Gordon, Ronald
name: Cunningham-Rundles, Charlotte
name: Fowkes, Mary
name: Tsankova, Nadejda
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Targeted sequencing strategy for BKV VP1 and NCCR regions. a. Products of nested PCR encompassing 1265 bp of BKV VP1 and 800 bp of NCCR with initial portion of early coding region are purified from an 1 % agarose gel and submitted to Sanger sequencing. b. Sanger sequencing results of VP1 and NCCR purified gel products. (PDF 427 kb)
Additional file 17: Table S15. of Genome-wide investigation and expression analyses of the pentatricopeptide repeat protein gene family in foxtail millet
Creators: name: Liu, Jia-Ming
name: Zhao-Shi Xu
name: Pan-Pan Lu
name: Li, Wei-Wei
name: Chen, Ming
name: Guo, Chang-Hong
name: Ma, You-Zhi
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 60506 Virology

description: Primer sequences used for real-time PCR analysis. (DOCX 15Â kb)
Additional file 18: Table S16. of Genome-wide investigation and expression analyses of the pentatricopeptide repeat protein gene family in foxtail millet
Creators: name: Liu, Jia-Ming
name: Zhao-Shi Xu
name: Pan-Pan Lu
name: Li, Wei-Wei
name: Chen, Ming
name: Guo, Chang-Hong
name: Ma, You-Zhi
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: Plant Biology
subject: 60506 Virology

description: Primer sequences used for the subcellular localization analysis of the PPR proteins in foxtail millet. (DOCX 14Â kb)
Mycotretus sannio Lacordaire 1842
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycotretus
Mycotretus sannio

description: 202. Mycotretus sannio Lacordaire, 1842
Mycotretus sannio Lacordaire, 1842: 169. Type locality: “ Brésil ”.
Mycotretus sannio – Crotch 1876: 441. — Gemminger & Harold 1876: 3695. — Kuhnt 1909: 75; 1911: 53. — Blackwelder 1945: 467. — Alvarenga 1994: 34. — Skelley 1998b: 15.
Type specimen
Not located.
Other specimens examined
BRAZIL • 1 spec. (Fig. 36B) “TYPE. [printed. Crossed out], Sannio ex. Descr [?] [handwritten]”; UMCZ.
Distribution
Unknown locality in Brazil.
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on pages 155-156, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
Additional file 2: of Pitfalls of improperly procured adjacent non-neoplastic tissue for somatic mutation analysis using next-generation sequencing
Creators: name: Wei, Lei
name: Papanicolau-Sengos, Antonios
name: Liu, Song
name: Jianmin Wang
name: Conroy, Jeffrey
name: Glenn, Sean
name: Brese, Elizabeth
name: Hu, Qiang
name: Miles, Kiersten
name: Burgher, Blake
name: Maochun Qin
name: Head, Karen
name: Omilian, Angela
name: Wiam Bshara
name: Krolewski, John
name: Trump, Donald
name: Johnson, Candace
name: Morrison, Carl
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology

description: Supplementary methods, description of tables, figure legends and references. (DOCX 33 kb)
Additional file 7: Table S6. of Genome-wide investigation and expression analyses of the pentatricopeptide repeat protein gene family in foxtail millet
Creators: name: Liu, Jia-Ming
name: Zhao-Shi Xu
name: Pan-Pan Lu
name: Li, Wei-Wei
name: Chen, Ming
name: Guo, Chang-Hong
name: Ma, You-Zhi
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: The Ks/Ka ratios and the estimated divergence times for putatively segmentally duplicated SiPPR genes. Detailed segmental duplication information including domains present, chromosomal location, E-value, and % homology are provided for each putatively segmentally duplicated SiPPR gene. (DOCX 30Â kb)
Mycotretus savignyi Lacordaire 1842
Creators: name: Pecci-Maddalena, Italo Salvatore de Castro
name: Lopes-Andrade, Cristiano
name: Skelley, Paul
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Erotylidae
Mycotretus
Mycotretus savignyi

description: 203. Mycotretus savignyi Lacordaire, 1842
Mycotretus savignyi Lacordaire, 1842: 156. Type locality: “ Colombie ” (Fig. 36C).
Mycotretus savignyi – Crotch 1873b: 145; 1876: 455. — Gemminger & Harold 1876: 3695. — Gorham 1888: 60. — Kuhnt 1909: 72; 1911: 53. — Deelder 1942: 89. — Mader 1942: 172; 1951: 212. — Blackwelder 1945: 467. — Guérin 1948: 20. — Alvarenga 1994: 34. — Skelley 1998b: 17. — McHugh & Chaboo 2015: 278.
Primary type
Lectotype, here designated (Fig. 36C)
COLOMBIA • “Ex-Musaeo Mniszech [printed] \ Type [handwritten] \ Savignyi Lac [handwritten] \ Colombie [handwritten] \ LECTOTYPE [printed] Mycotretus savignyi Lacordaire, 1842 [red label, handwritten]”; MNHN.
Remarks
New junior synonym of M. lesueuri Chevrolat, 1835 (Fig. 3F, see above).
description: Published as part of Pecci-Maddalena, Italo Salvatore de Castro, Lopes-Andrade, Cristiano & Skelley, Paul, 2023, Catalogue of Mycotretus Lacordaire, 1842 (Coleoptera: Erotylidae: Tritomini): an annotated, illustrated and historical approach, pp. 1-182 in European Journal of Taxonomy 876 (1) on page 156, DOI: 10.5852/ejt.2023.876.2149, http://zenodo.org/record/8095647
Trophic effects on nutrient cycling
Creators: name: Ngai, Jacqueline
Publisher: name: University of British Columbia
Year: 2008

description: The top-down effects of consumers and bottom-up effects of resource availability are important in determining community structure and ecological processes. I experimentally examined the roles of consumers — both detritivores and predators — and habitat context in affecting nutrient cycling using the detritus-based insect community in bromeliad leaf wells. I also investigated the role of multiple resources in limiting plant productivity using meta analyses. The insect community in bromeliads only increased nitrogen release from leaf detritus in the presence of a predator trophic level. When only detritivores were present, the flow of stable isotope-labeled nitrogen from detritus to bromeliads was statistically indistinguishable from that in bromeliads lacking insects. I suggest that emergence of adult detritivores constitutes a loss of nitrogen from bromeliad ecosystems, and that predation reduces the rate of this nutrient loss. Hence, insects facilitate nutrient uptake by the plant, but only if both predators and detritivores are present. Moreover, predators can affect nutrient cycling by influencing the spatial scale of prey turnover. This mechanism results in a pattern opposite to that predicted by classic trophic cascade theory. Increasing habitat complexity can have implications for nutrient cycling by decreasing the foraging efficiency of both predators and their prey, and by affecting the vulnerability of predators to intraguild predation. Along a natural gradient in bromeliad size, I found that, depending on the relationship between community composition and habitat size, habitat complexity interacts with the changing biotic community to either complement or counteract the impact of predators on nutrient uptake by bromeliads. In contrast to the existing emphasis on single-resource limitation of primary productivity, meta-analyses of a database of 653 studies revealed widespread limitation by multiple resources, and frequent interaction between these resources in restricting plant growth. A framework for analyzing fertilization studies is outlined, with explicit consideration of the possible role of multiple resources. I also review a range of mechanisms responsible for the various forms of resource limitation that are observed in fertilization experiments. These studies emphasize that a wider range of predator and nutrient impacts should be considered, beyond the paradigm of single resource limitation or classic trophic cascades.
Eremithallales
Creators: name: Calabon, Mark S.
name: Jones, E. B. Gareth
name: Pang, Ka-Lai
name: Abdel-Wahab, Mohamed A.
name: Jin, Jing
name: Devadatha, Bandarupalli
name: Sadaba, Resurreccion B.
name: Apurillo, Carlo Chris
name: Hyde, Kevin D.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Fungi
Ascomycota
Dothideomycetes
Eremithallales

description: 2.2.1 Eremithallales (Dothideomycetes, Ascomycota)
Eremithallales was introduced for a single species Eremithallus costaricensis (Lücking et al. 2008), with a divergence time estimated as 238 MYA (stem age, Hongsanan et al. 2020b). The order comprised one family Eremithallaceae which has now been synonymized under Melaspileaceae, and Eremithallus costaricensis is included in the genus Melaspilea (Ertz and Diederich 2015). One marine ascomycete has been referred to Melaspilea, namely M. mangrovei (Vrijmoed et al. 1996), but this has not been confirmed by molecular data.
description: Published as part of Calabon, Mark S., Jones, E. B. Gareth, Pang, Ka-Lai, Abdel-Wahab, Mohamed A., Jin, Jing, Devadatha, Bandarupalli, Sadaba, Resurreccion B., Apurillo, Carlo Chris & Hyde, Kevin D., 2023, Updates on the classification and numbers of marine fungi, pp. 213-238 in Botanica Marina (Warsaw, Poland) (Warsaw, Poland) 66 (4) on page 214, DOI: 10.1515/bot-2023-0032, http://zenodo.org/record/11000251