cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1 of Maternal Western diet mediates susceptibility of offspring to Crohn’s-like colitis by deoxycholate generation
Creators: name: Huang, Chongyang
name: Tan, Huishi
name: Song, Mengyao
name: Liu, Ke
name: Liu, Hongbin
name: Wang, Jun
name: Shi, Yanqiang
name: Hou, Fengyi
name: Zhou, Qian
name: Huang, Ruo
name: Shen, Binghai
name: Lin, Xinlong
name: Qin, Xiaoming
name: Zhi, Fachao
Publisher: name: figshare
Year: 2023
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer

description: Additional file 1: Table S1. Dietary compositions and caloric contents of high fat purified rodent diet. Table S2. Dietary compositions and caloric contents of control diet. Table S3. Demographic characteristics of the study population. Table S4. Primers for RT-PCR.
On Einstein-Hilbert type action of superon-graviton model(SGM)
Creators: name: Shima, Kazunari
name: Tsuda, Motomu
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The fundamental action of superon-graviton model(SGM) of Einstein-Hilbert type for space-time and matter is written down explicitly in terms of the fields of the graviton and superons by using the affine connection formalism and the spin connection formalism. Some characteristic structures including some hidden symmetries of the gravitational coupling of superons are manifested (in two dimensional space-time) with some details of the calculations. SGM cosmology is discussed briefly.
description: 20 pages, Latex, some more discussions and new references added
Spectra of protons and nuclei in the energy range of ${10^{10}\div10^{20}}$ eV in the framework of Galactic cosmic ray origin
Creators: name: Volkov, Nikolay
name: Lagutin, Anatoly
name: Tyumentsev, Alexander
name: Raikin, Roman
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We consider the problem of the cosmic ray spectrum formation assuming that cosmic rays are produced by Galactic sources. The anomalous diffusion equation proposed in our recent papers is used to describe cosmic ray propagation in the interstellar medium. We show that in the framework of this approach and with generation spectrum exponent $γ=2.85$ it is possible to reproduce locally observed basic features of cosmic rays in the energy region of $10^{10}÷10^{20}$ eV: difference between spectral exponents of protons and other nuclei, mass composition variation, `knee' problem, flattening of the primary spectrum at $E \geq 10^{18}÷10^{19}$ eV. The crucial model predictions for the mass composition behaviour in the ultra-high energy region are discussed.
description: 7 pages, 4 figures, 24th European Cosmic Ray Symposium
Tauberian Conditions for Almost Convergence in a Geodesic Metric Space
Creators: name: Khatibzadeh, Hadi
name: Pouladi, Hadi
Publisher: name: arXiv
Year: 2019
Subjects: subject: Functional Analysis (math.FA)
subject: FOS: Mathematics
subject: 40A05, 40A30

description: In the present paper, after recalling the Karcher mean in Hadamard spaces, we study the relation between convergence, almost convergence and mean convergence (respect to the defined mean) of a sequence in Hadamard spaces. These results extend Tauberian conditions from Banach spaces to Hadamard spaces. Also, we show that every almost periodic sequence in Hadamard spaces is almost convergent.
description: 24 pages, 1 figure
Neopleurophora browni Ament & Amorim 2013, sp. nov.
Creators: name: Ament, Danilo Cesar
name: Amorim, Dalton De Souza
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Phoridae
Neopleurophora
Neopleurophora browni

description: Neopleurophora browni, sp. nov.
(Figs. 140–143, 191, 229, 318–319)
 Diagnosis (males). Hypopygium very large, with large epandrial medial process, apically trifurcated; epandrial right posterior margin with large, setose projection; phallic ventral plate with large ventral, apically sclerotized process.
 Material examined. Holotype ♂, ECUADOR: Sucumbios: Sacha Lodge, 0.5ºS, 76.5ºW, 1–31.xii.1994, Malaise trap, 270 m, P. Hibbs col. (LACM). Paratype: 1♂, BRAZIL: Amazonas: Estirão do Equador, 4.47ºS, 71.50ºW, x.1979, M. Alvarenga col. (MZUSP).
 Description. Male. Body length, 2.8 mm. Head. Frons dark brown, except for yellow anterior margin, pubescent, without median furrow. Flagellomere 1 light brown, pubescent, oval. Arista pre-apical, pubescent. Palpus light brown; two upper genal and one lower genal setae. Thorax. Scutum, pleural sclerites and legs yellowish-brown; anepisternum setulose dorsally, with one long seta; scutellum dark brown, with medial and posterior areas grayish. Forefemur with ventral row of five strong setae near apex. Foretibia with one dorsal seta at basal third and an anterodorsal row of strong setae. Foremetatarsus ratio, 5.0. Midtibia with one anterodorsal and 2–3 posterodorsal setae (Fig. 191). Hind femur swollen (height/length ratio, 0.42), without ventral, strong setae. Hind tibia with 2–3 anterodorsal and 5–6 posterodorsal setae (Fig. 229). Wing. Costa 0.49 of the wing length, other wing features as for the genus. Halter yellowish-brown. Abdomen. Tergites dark brown, with yellow posterior band. Tergite 6 about three times longer than other tergites. Hypopygium light brown, very large (Figs. 140–143). Epandrial medial process large, apically trifurcated. Epandrial right posterior margin with large setulose projection and subepandrial setulose process. Hypandrium lobes elongated, left lobe sclerotized, right lobe bilobed at apex. Hypoproct with two setae. Phallus (Figs. 318–319). Basiphallus without dorsal process. Core plate flattened. Epiphallus with transparent scales, connected to right arm at left lateral of the phallus. Ventral plate well developed, bifurcated into the secondary scaled process and a large ventral, apically sclerotized process.
 Female. Unknown.
 Geographic distribution. This species is known from Amazonian Ecuador and from northwestern Brazil, close to the border with Peru.
 Etymology. This species is named after the phorid specialist Dr. Brian V. Brown.
description: Published as part of Ament, Danilo Cesar & Amorim, Dalton De Souza, 2013, Taxonomic revision of the genus Neopleurophora Brown (Diptera: Phoridae), with the description of thirty seven new species, pp. 1-93 in Zootaxa 3657 (1) on page 60, DOI: 10.11646/zootaxa.3657.1.1, http://zenodo.org/record/5265587
Agathidium aztec Subgroup
Creators: name: MILLER, KELLY B.
name: WHEELER, QUENTIN D.
Publisher: name: Zenodo
Year: 2005
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Leiodidae
Agathidium
Agathidium aztec

description: Agathidium aztec Subgroup
 DISCUSSION: This group is characterized by the shape of the male genitalia. The median lobe of the aedeagus has a moderately to distinctly prominent lateral sulcus near the base of the apical portion (e.g., figs. 184, 186). This sulcus is subtended by prominent, lobelike carinae that extend laterally and dorsally (e.g., figs. 184, 186). This feature is very strongly developed in some taxa but in others is less prominent. The lateral lobes are apically variously sinuate and typically expanded apically and submedially. The lateral lobes fit into the lateral sulcus and between the carinae. Many of these species are dorsally iridescent. There is considerable variation in body size, relative size of the eyes, development of the metasternal carinae, and the male metasternal fovea and metafemur. Two of these species have unusual thornlike structures on the front legs (A. tribulosum and A. tribulograndum), and one species (A. multidentatum) has the apex of the median lobe of the aedeagus asymmetrical. Most of the species are described here as new, and it is a very reasonable assumption that the true diversity of the group in Mexico and Central America is only beginning to be discovered. Most of the species have been collected only by sifting litter and Berlese extractions, suggesting that they are relatively cryptic in habitat.
description: Published as part of MILLER, KELLY B. & WHEELER, QUENTIN D., 2005, Slime-Mold Beetles Of The Genus Agathidium Panzer In North And Central America, Part Ii. Coleoptera: Leiodidae, pp. 1-167 in Bulletin of the American Museum of Natural History 2005 (291) on page 91, DOI: 10.1206/0003-0090(2005)291<0001:SBOTGA>2.0.CO;2, http://zenodo.org/record/5362016
Continuous Quantum Measurement and the Quantum to Classical Transition
Creators: name: Bhattacharya, Tanmoy
name: Habib, Salman
name: Jacobs, Kurt
Publisher: name: arXiv
Year: 2002
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: While ultimately they are described by quantum mechanics, macroscopic mechanical systems are nevertheless observed to follow the trajectories predicted by classical mechanics. Hence, in the regime defining macroscopic physics, the trajectories of the correct classical motion must emerge from quantum mechanics, a process referred to as the quantum to classical transition. Extending previous work [Bhattacharya, Habib, and Jacobs, Phys. Rev. Lett. {\bf 85}, 4852 (2000)], here we elucidate this transition in some detail, showing that once the measurement processes which affect all macroscopic systems are taken into account, quantum mechanics indeed predicts the emergence of classical motion. We derive inequalities that describe the parameter regime in which classical motion is obtained, and provide numerical examples. We also demonstrate two further important properties of the classical limit. First, that multiple observers all agree on the motion of an object, and second, that classical statistical inference may be used to correctly track the classical motion.
description: 12 pages, 4 figures, Revtex4
Additional file 1 of Knowledge and attitudes about end-of-life decisions, good death and principles of medical ethics among doctors in tertiary care hospitals in Sri Lanka: a cross-sectional study
Creators: name: Chang, Thashi
name: Saumya Darshani
name: Pavithra Manikavasagam
name: Carukshi Arambepola
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1: S1. Questionnaire.
Speaking Stata: I. J. Good and quasi–Bayes smoothing of categorical frequencies
Creators: name: Cox, Nicholas J.
name: Cox, Nicholas J.
Publisher: name: Unknown
Year: 2009
Subjects: subject: Research Methods/ Statistical Methods
subject: qsbayesi
subject: qsbayes
subject: categorical data
subject: contingency tables
subject: Mata
subject: pseudo-Bayes
subject: quasi-Bayes
subject: random zeros
subject: sampling zeros
subject: smoothing

description: I. J. Good (1916–2009) was a prolific scientist who contributed to many fields, mostly from a Bayesian standpoint. This column explains his idea of quasi-Bayes (a.k.a. pseudo-Bayes) estimation or smoothing of categorical frequencies in a contingency table, which is especially useful as a way of dealing with awkward sampling or random zeros. It shows how the method can be implemented, almost calculator-style, using a combination of Stata and Mata. Convenience commands qsbayesi and qsbayes are also introduced.
Bounds on WIMP dark matter from galaxy clusters at low redshift
Creators: name: Tan, Xiuhui
name: Colavincenzo, Manuel
Publisher: name: arXiv
Year: 2019
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: The study of the cross-correlation angular power spectrum between gravitational tracers and electromagnetic signals can be a powerful tool to constrain Dark Matter (DM) microscopic properties. In this work we correlate \Fermi\ diffuse \g-ray maps with catalogues of galaxy clusters. To emphasize the sensitivity to a DM signal, we select clusters at low-redshift $010^{13}M_\odot$. The analysis is performed with four catalogues in different wavebands, including infrared, optical and X-rays. No evidence for a DM signal is identified. On the other hand, we derive competitive bounds: the thermal cross-section is excluded at 95\% C.L. for DM masses below 20 GeV and annihilation in the $τ^+-τ^-$ channel.
title: Stigmatised transitions into adulthood
title: Understanding the experiences of Black African youth with prenatally acquired HIV living in the UK
titleType: Subtitle
Creators: name: Muchena, Salome
Publisher: name: Lancaster University
Year: 2021

description: Young black African migrants living with prenatally acquired HIV in the UK experience an intersection of racism and HIV stigma. Their parents play a role in socialising them into their status as stigmatised. This makes transition into adulthood difficult in specific ways that could be better supported if we had a good understanding of them, but no-one has looked at this. Despite the knowledge that the population of young people with prenatally acquired HIV in the UK is mainly comprised of black Africans, no research has explored how the intersection of race and HIV related stigma may potentially exacerbate transition challenges of this group. The aim of this qualitative study was to address this gap by reporting on the experiences and impact of intersecting stigmatised identities as well as being socialised into stigma by parents, on the transition to adulthood of the black African young people with prenatally acquired HIV living in the United Kingdom (UK). Using semi-structured interviews with 13 male and female participants between the ages of 16-25 years, the study explored the young people’s experiences of being socialised into stigma by parents, ethnic and HIV-related stigma with particular reference to employment, peer and romantic relationships and the ways in which these experiences shaped their transition into adulthood. The findings revealed that the transition to adulthood of prenatally infected HIV positive black African youth in the UK is not only affected by ethnic and HIV related stigma but also by the covert and overt messages from their parents that HIV is a stigmatised disease therefore it has to be kept private. The privacy orientation from parents and society’s negative attitudes toward Africans and HIV, restrict the young people’s ability to disclose their status consequently, limiting their social support networks and delaying or preventing their opportunities to form families of their own or fulfil their employment and career aspirations. There is need for stigma reduction interventions that include the parents and are also ethnic-sensitive so to challenge the racist stereotypes towards the black African youth with prenatally acquired HIV living in the UK in order to promote a successful transition into adulthood.
Magnetothemopower study of quasi two-dimensional organic conductor $α$-(BEDT-TTF)$_2$KHg(SCN)$_4$
Creators: name: Choi, E. S.
name: Brooks, J. S.
name: Qualls, J. S.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We have used a low-frequency magneto-thermopower (MTEP) method to probe the high magnetic field ground state behavior of $α$-(BEDT-TTF)$_2$KHg(SCN)$_4$ along all three principal crystallographic axes at low temperatures. The thermopower tensor coefficients ($S_{xx}, S_{yx}$ and $S_{zz}$) have been measured to 30 T, beyond the anomalous low temperature, field-induced transition at 22.5 T. We find a significant anisotropy in the MTEP signal, and also observe large quantum oscillations associated with the de Haas - van Alphen effect. The anisotropy indicates that the ground state properties are clearly driven by mechanisms that occur along specific directions for the in-plane electronic structure. Both transverse and longitudinal magnetothermopower show asymptotic behavior in field, which can be explained in terms of magnetic breakdown of compensated closed orbits.
description: 9 pages, 10 figures
Additional file 4 of scRNASequest: an ecosystem of scRNA-seq analysis, visualization, and publishing
Creators: name: Li, Kejie
name: Sun, Yu H.
name: Ouyang, Zhengyu
name: Negi, Soumya
name: Gao, Zhen
name: Zhu, Jing
name: Wang, Wanli
name: Chen, Yirui
name: Piya, Sarbottam
name: Hu, Wenxing
name: Zavodszky, Maria I.
name: Yalamanchili, Hima
name: Cao, Shaolong
name: Gehrke, Andrew
name: Sheehan, Mark
name: Huh, Dann
name: Casey, Fergal
name: Zhang, Xinmin
name: Zhang, Baohong
Publisher: name: figshare
Year: 2023
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Artificial Intelligence and Image Processing
subject: FOS: Computer and information sciences

description: Additional file 4: Fig. S1. Evaluation metrics for harmonization. (A) Batch correction performance evaluation by plots of kBET metrics and (B). Silhouette coefficients. For our demo dataset, LIGER was identified as the best batch correction method. Fig. S2. Percentage of top 50 features. Fig. S3. Number of cells with UMI > 0 for each gene (left) and the percentage of cells with UMI > 0 for each gene (right).
Additional file 2: of Next generation sequencing based assessment of the alloreactive T cell receptor repertoire in kidney transplant patients during rejection: a prospective cohort study
Creators: name: Aschauer, Constantin
name: Jelencsics, Kira
name: Hu, Karin
name: Heinzel, Andreas
name: Vetter, Julia
name: Fraunhofer, Thomas
name: Schaller, Susanne
name: Winkler, Stephan
name: Pimenov, Lisabeth
name: Gualdoni, Guido
name: Eder, Michael
name: Kainz, Alexander
name: Regele, Heinz
name: Reindl-Schwaighofer, Roman
name: Oberbauer, Rainer
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: EQUATOR Network Reporting Checklist. â Standard Protocol Items: Recommendations for Interventional Trials 2013 statementâ checklist. (PDF 76 kb)
A Comparison of Policy Search in Joint Space and Cartesian Space for Refinement of Skills
Creators: name: Fabisch, Alexander
Publisher: name: arXiv
Year: 2019
Subjects: subject: Robotics (cs.RO)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: Imitation learning is a way to teach robots skills that are demonstrated by humans. Transfering skills between these different kinematic structures seems to be straightforward in Cartesian space. Because of the correspondence problem, however, the result will most likely not be identical. This is why refinement is required, for example, by policy search. Policy search in Cartesian space is prone to reachability problems when using conventional inverse kinematic solvers. We propose a configurable approximate inverse kinematic solver and show that it can accelerate the refinement process considerably. We also compare empirically refinement in Cartesian space and refinement in joint space.
(63)Cu NQR Evidence for Spatial Variation of Hole Concentration in La(2-x)Sr(x)CuO(4)
Creators: name: Singer, P. M.
name: Hunt, A. W.
name: Imai, T.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We report experimental evidence for the spatial variation of hole concentration x_(hole) in the high Tc superconductor La(2-x)Sr(x)CuO(4) (0.04 <= x <= 0.16) by using (63)Cu NQR for (63)Cu isotope enriched samples. We demonstrate that the extent of the spatial variation of the local hole concentration D(x)_(hole) is reflected on (63)1/T1 and deduce the temperature dependence. D(x)_(hole) increases below 500 - 600K, and reaches values as large as D(x)_(hole)/x ~ 0.5 below ~ 150K. We estimate the length scale of the spatial variation in x_(hole) to be R_(hole) >~ 3nm from analysis of the NQR spectrum.
description: Accepted for publication in Physical Review Letters
Additional file 1: of Next generation sequencing based assessment of the alloreactive T cell receptor repertoire in kidney transplant patients during rejection: a prospective cohort study
Creators: name: Aschauer, Constantin
name: Jelencsics, Kira
name: Hu, Karin
name: Heinzel, Andreas
name: Vetter, Julia
name: Fraunhofer, Thomas
name: Schaller, Susanne
name: Winkler, Stephan
name: Pimenov, Lisabeth
name: Gualdoni, Guido
name: Eder, Michael
name: Kainz, Alexander
name: Regele, Heinz
name: Reindl-Schwaighofer, Roman
name: Oberbauer, Rainer
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology

description: Informed consent Version 1 for the research study: Next generation sequencing based assessment of the alloreactive T- cell receptor repertoire in kidney transplant patients during rejection: a prospective cohort study. (PDF 158 kb)
Additional file 2 of Knowledge and attitudes about end-of-life decisions, good death and principles of medical ethics among doctors in tertiary care hospitals in Sri Lanka: a cross-sectional study
Creators: name: Chang, Thashi
name: Saumya Darshani
name: Pavithra Manikavasagam
name: Carukshi Arambepola
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1: S2. Key to analysis.
Theory of the dc Magnetotransport in Laterally Modulated Quantum Hall Systems Near Filling $ν={1/2}$
Creators: name: Zimbovskaya, Natalya A.
name: Gumbs, Godfrey
name: Birman, Joseph L.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: A quasiclassical theory for dc magnetotransport in a modulated quantum Hall system near filling factor $ν={1/2}$ is presented. A weak one-dimensional electrostatic potential acts on the two-dimensional electron gas. Closed form analytic expressions are obtained for the resistivity $ρ_\perp$ corresponding to a current at right angles to the direction of the modulation lines as well as a smaller component $ρ_{||}$ for a current along the direction of the modulation lines. It is shown that both resistivity components are affected by the presence of the modulation. Numerical results are presented for $ρ_\perp$ and $ρ_{||}$ and show reasonable agreement with the results of recent experiments.
description: 8 pages, 1 figure, text added
Diagnostics of timing noise in middle aged pulsars
Creators: name: Namkham, Nakornping
name: Jaroenjittichai, Phrudth
name: Johnston, Simon
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Radio pulsars are often used as clocks in a wide variety of experiments. Imperfections in the clock, known as timing noise, have the potential to reduce the significance of, or even thwart e.g. the attempt to find a stochastic gravitational wave (GW) background. We measure the timing noise in a group of 129 mostly middle-aged pulsars (i.e. characterstic ages near 1~Myr) observed with the Parkes radio telescope on a monthly basis since 2014. We examine four different metrics for timing noise, but it remains unclear which, if any, provides the best determination. In spite of this, it is evident that these pulsars have significantly less timing noise than their younger counterparts, but significantly more than the (much older) millisecond pulsars (MSPs). As with previous authors, we find a strong correlation between timing noise and the pulsar spin-down rate, $\dotν$. However, for a given $\dotν$ there is a spread of about a factor 30 in the strength of the timing noise likely indicating that nuclear conditions in the interior of the stars differs between objects. We briefly comment on the implications for GW detection through pulsar timing arrays as the level of timing noise in MSPs may be less than predicted.
description: Accepted by MNRAS. 10 pages
Additional file 9: of Mitochondrial genomic variation drives differential nuclear gene expression in discrete regions of Drosophila gene and protein interaction networks
Creators: name: Mossman, Jim
name: Biancani, Leann
name: Rand, David
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Figure S3. Top ranked DE genes are physically clustered in the genome; a pattern consistently observed across independent nuclear genetic backgrounds and sexes. Physical clustering erodes with increasing p-value in the Î mtDNA DE analysis. Each plot shows the window position of non-overlapping 200 gene groups from a ranked-by-p-value DE gene list. The most significant 200 genes are on the far left of each plot (window 1) and increasing p-value genes are associated with higher value 200-gene windows. The ordinal scale shows the significance (â log10 p-value) of the statistical clustering obtained using the cluster locator package as in the main analysis. Results from four independent nuclear backgrounds are shown: DGRP-315 (A, B); DGRP-820 (C, D); OregonR (E, F); and AustriaW132 (G, H). Females are shown in (A, C, E, G); males are shown in (B, D, F, H). A local weighted regression curve is shown in red in each plot. (PDF 5 kb)
Additional file 1: of Peptidoglycan-type analysis of the N-acetylmuramic acid auxotrophic oral pathogen Tannerella forsythia and reclassification of the peptidoglycan-type of Porphyromonas gingivalis
Creators: name: Mayer, Valentina
name: Hottmann, Isabel
name: Figl, Rudolf
name: Altmann, Friedrich
name: Mayer, Christoph
name: SchĂ¤Ffer, Christina
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Figure S1. LC-MS analysis of P. gingivalis PGN digests with (A) mutanolysin yielding G-M-peptides and cross-linked G-M-tetra-tetra-M-G and (B) NagZ and amidase, yielding single peptides. Legend: TIC, total ion chromatogram; G, GlcNAc; M, MurNAc. (DOCX 335 kb)
Environment - Assisted Invariance, Causality, and Probabilities in Quantum Physics
Creators: name: Zurek, W. H.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: I introduce environment - assisted invariance -- a symmetry related to causality that is exhibited by correlated quantum states -- and describe how it can be used to understand the nature of ignorance and, hence, the origin of probabilities in quantum physics.
Interlayer Exchange Interactions, SU(4) Soft Waves and Skyrmions in Bilayer Quantum Hall Ferromagnets
Creators: name: Ezawa, Z. F.
name: Hasebe, K.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The Coulomb exchange interaction is the driving force for quantum coherence in quantum Hall systems. We construct a microscopic Landau-site Hamiltonian for the exchange interaction in bilayer quantum Hall ferromagnets, which is characterized by the SU(4) isospin structure. By taking a continuous limit, the Hamiltonian gives rise to the SU(4) nonlinear sigma model in the von-Neumann-lattice formulation. The ground-state energy is evaluated at filling factors $ν=1,2,3,4$. It is shown at $ν=1$ that there are 3 independent soft waves, where only one soft wave is responsible for the coherent tunneling of electrons between the two layers. It is also shown at $ν=1$ that there are 3 independent skyrmion states apart from the translational degree of freedom. They are CP$^{3}$ skyrmions enjoying the spin-charge entanglement confined within the \LLL.
description: 12 pages, 2 figures
Agathidium dentigerum Subgroup
Creators: name: MILLER, KELLY B.
name: WHEELER, QUENTIN D.
Publisher: name: Zenodo
Year: 2005
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Leiodidae
Agathidium
Agathidium dentigerum

description: Agathidium dentigerum Subgroup
DISCUSSION: This group of species is characterized by the operculum of the median lobe completely divided into two long, independent rami (e.g., fig. 309), extensive endophallic armature consisting of an elongate medial, triramous process with a medial, apically truncate lobe and lateral, flattened hyaline lobes, the base of the lateral lobes distinctly sinuate in ventral aspect (e.g., fig. 309), relatively narrow metasternum medially with moderately large male metasternal fovea, somewhat reduced eyes that are dorsoventrally compressed and ovoid with large facets, and a large, acutely pointed, occasionally somewhat falcate male metafemoral tooth. The group may be further divided into two groups based on the presence or absence of a prominent lobelike tubercle medially on the gula. Other than this, the species are very similar externally with the only other significant differences being the relative development of the medial mesosternal and oblique metasternal carinae and the development of the lobelike process posteromedially on the metasternum. Male genitalia are generally diagnostic and male specimens should be dissected for most positive identification of specimens. The species are eastern Nearctic in distribution. They have been most commonly collected by sifting various litter types and Berlese extraction. The reduced eyes, strong contractility, and winglessness of many specimens suggest they are cryptic in habitats living in litter and in the substrate.
 The only previously described species in this group is A. dentigerum Horn. Since the species in this subgroup are externally very similar, it is not surprising that Horn (1880) apparently included specimens in A. dentigerum that belong in what we describe here as new species. As additional collecting in the eastern United States ensues, we expect more species of this subgroup to come to light since the species appear to be numerous, cryptic in habitat, and relatively poorly collected.
description: Published as part of MILLER, KELLY B. & WHEELER, QUENTIN D., 2005, Slime-Mold Beetles Of The Genus Agathidium Panzer In North And Central America, Part Ii. Coleoptera: Leiodidae, pp. 1-167 in Bulletin of the American Museum of Natural History 2005 (291) on page 130, DOI: 10.1206/0003-0090(2005)291<0001:SBOTGA>2.0.CO;2, http://zenodo.org/record/5362016
Optical Pumping in Ferromagnet-Semiconductor Heterostructures: Magneto-optics and Spin Transport
Creators: name: Isakovic, A. F.
name: Carr, D. M.
name: Strand, J.
name: Schultz, B. D.
name: Palmstrom, C. J.
name: Crowell, P. A.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: Epitaxial ferromagnetic metal - semiconductor heterostructures are investigated using polarization-dependent electroabsorption measurements on GaAs p-type and n-type Schottky diodes with embedded In1-xGaxAs quantum wells. We have conducted studies as a function of photon energy, bias voltage, magnetic field, and excitation geometry. For optical pumping with circularly polarized light at energies above the band edge of GaAs, photocurrents with spin polarizations on the order of 1 % flow from the semiconductor to the ferromagnet under reverse bias. For optical pumping at normal incidence, this polarization may be enhanced significantly by resonant excitation at the quantum well ground-state. Measurements in a side-pumping geometry, in which the ferromagnet can be saturated in very low magnetic fields, show hysteresis that is also consistent with spin-dependent transport. Magneto-optical effects that influence these measurements are discussed.
description: PDF, 4 figures, 1 table
Satellite monitoring of atmospheric temperature profiles and cloud cover over the Yakutsk EAS array and the TAIGA observatory
Creators: name: Lagutin, Anatoly A.
name: Volkov, Nikolay V.
name: Zhukov, Andrey P.
name: Makushev, Konstantin M.
name: Maslov, Alexander A.
name: Mordvin, Egor Yu.
name: Raikin, Roman I.
name: Serebryakova, Tatyana L.
name: Sinitsin, Vladimir V.
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Space Physics (physics.space-ph)
subject: FOS: Physical sciences

description: We consider the problem of night-time atmosphere monitoring at the locations of the Yakutsk EAS array and the TAIGA observatory for the annual October-April period of observations at these facilities. It is shown that the use of data from instruments aboard Terra, Aqua, Suomi-NPP and NOAA-20 satellites, received by the ground stations of the Altai State University, Russia, and processed to Level 2 (retrieval of geophysical parameters of the atmosphere), gives the possibility of the near-real-time monitoring observations of the cloud cover structure and the temperature profiles at night with a spatial resolution and a frequency sufficient for meteorological correction of the detector readings.
description: 7 pages, 6 figures, 26th Extended European Cosmic Ray Symposium
Additional file 1: of Early Adolescent Skills for Emotions (EASE) intervention for the treatment of psychological distress in adolescents: study protocol for randomised controlled trials in Lebanon and Jordan
Creators: name: Brown, Felicity
name: Steen, Frederik
name: Taha, Karine
name: Aoun, May
name: Bryant, Richard
name: Jordans, Mark
name: Aiysha Malik
name: Ommeren, Mark
name: Abualhaija, Adnan
name: Aqel, Ibrahim
name: Ghatasheh, Maha
name: Habashneh, Rand
name: Sijbrandij, Marit
name: Chammay, Rabih
name: Watts, Sarah
name: Aemal Akhtar
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Science Policy

description: SPIRIT 2013 checklist: Recommended items to address in a clinical trial protocol and related documents. (DOCX 45 kb)
Additional file 8: of Mitochondrial genomic variation drives differential nuclear gene expression in discrete regions of Drosophila gene and protein interaction networks
Creators: name: Mossman, Jim
name: Biancani, Leann
name: Rand, David
Publisher: name: figshare
Year: 2019
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Figure S2. Mapping DE gene enrichments using SAFE and a PPI network [49] analysis (all female genotype contrasts). Enriched regions of DE genes in the PPI network are shown as a heat component. Red hotspots show enriched regions of DE genes corresponding with: ΔmtDNA ‘haplotype’ (A), ΔmtDNA ‘species’ (B), G x G ‘mitonuclear epistasis’ (C), Zim53-OreR (D), Zim53-siI (E), Zim53-sm21 (F), OreR-siI (G), OreR-sm21 (H), and siI-sm21 (I). Contrasts show both conserved and private regions of enrichment across contrasts. (PDF 1117 kb)
Coexistence of spin-singlets and metallic behavior in simple cubic CsC60
Creators: name: Brouet, V.
name: Alloul, H.
name: Forro, L.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We present a detailed NMR study of simple cubic CsC60, the only metallic cubic fullerides known so far besides A3C60. 133Cs NMR signals the presence of about 12 to 15% of ``anomalous'' C60 balls, characterized by a 15 meV gap. We present different experimental observations supporting the idea that a spin-singlet (i.e. a C60^{2-}) is localized on these latter balls and stabilized by a JTD. A splitting of the 133Cs spectrum into three different lines, with distinct electronic environments, is observed which emerges naturally from such a situation. Quadrupole effects on 133Cs confirm an inhomogeneous distribution of the charge between C60 molecules. Analysis of the relative intensities of the 133Cs lines show that the spin-singlets do not form clusters at the local scale, but are diluted within the lattice. This is probably to avoid the occurrence of neighboring C60^{2-} and minimize electrostatic repulsion between these balls. Through spin-lattice relaxation measurements, we detect chemical exchange between the Cs sites above 100 K. From this, we deduce that the lifetime of a spin-singlet on a given ball decreases exponentially with increasing temperature (from 15 sec at 100 K to 3 ms at 130 K). The implications of the presence of such spin-singlets for the nature of the metallic state is discussed, in relation with a decrease of 1/T1T for 13C at low temperatures, which would be anomalous for a simple metal.
description: 9 pages, 10 figures
Dimensional Crossover of Topological Edge States in Su-Schrieffer-Heeger Model
Creators: name: Obana, Daichi
name: Liu, Feng
name: Wakabayashi, Katsunori
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Su-Schrieffer-Heeger (SSH) model on two-dimensional square lattice exhibits a topological phase transition, which is related to the Zak phase determined by bulk band topology. The strong modulation of electron hopping causes nontrivial charge polarization even in the presence of inversion symmetry. The energy band structures and topological edge states have been calculated numerically in previous studies. Here, however, full energy spectrum and explicit form of wave functions for two-dimensional bulk and one-dimensional ribbon geometries of SSH model are analytically derived using wave mechanics approach. Explicit analytic representations of wave functions provide the information of parity for each subband, localization length and critical point of topological phase transition in SSH ribbon. It is also shown that the dimensional crossover of topological transition point for SSH model from one to two-dimension.
Additional file 1 of Gitelman syndrome with Graves’ disease leading to rhabdomyolysis: a case report and literature review
Creators: name: Xu, Jing
name: He, Juan
name: Xu, Shujing
name: Wang, Rui
name: Peng, Nianchun
name: Zhang, Miao
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Cancer
subject: Mental Health
subject: Computational Biology

description: Supplementary Material 1
Tachyons, Supertubes and Brane/Anti-Brane Systems
Creators: name: Mateos, David
name: Ng, Selena
name: Townsend, Paul K.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We find supertubes with arbitrary (and not necessarily planar) cross section; the stability against the D2-brane tension is due to a compensation by the local momentum generated by Born-Infeld fields. Stability against long-range supergravity forces is also established. We find the corresponding solutions of the infinite-N M(atrix) model. The supersymmetric D2/anti-D2 system is a special case of the general supertube, and we show that there are no open-string tachyons in this system via a computation of the open-string one-loop vacuum energy.
description: 1+23 pages, 2 figures, LaTeX. V2, 1+28 pages: Further generalization to non-planar cross-sections and addition of an entirely new section with the explicit supergravity solutions. V3, 1+30 pages: Bound on the angular momentum added, other minor changes in Section 2
Additional file 1 of Re-conceptualizing sustainable urban sanitation in Uganda: why the roots of ‘Slumification’ must be dealt with
Creators: name: Kwiringira, Japheth Nkiriyehe
name: Kabumbuli, Robert
name: Zakumumpa, Henry
name: Mugisha, James
name: Akugizibwe, Mathias
name: Ariho, Paulino
name: Rujumba, Joseph
Publisher: name: figshare
Year: 2021
Subjects: subject: Space Science
subject: Medicine
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 60506 Virology

description: Additional file 1 Supplementary file 1 Research instruments.
How to conduct an interdisciplinary research: the challenges of being a doctorate or post-doctorate researcher in heritage science
Creators: name: Mogenet, Caroline
Publisher: name: Zenodo
Year: 2024
Subjects: heritage science
interdisciplinary research
PhD
Postdoc
Doctorate
Post-doctorate

description: These slides were presented at the HS Academy workshop titled "Working Group on Research Infrastructures and Heritage Science Career Paths," organized jointly by the IPERION HS and E-RIHS projects. The presentation was held in Bologna on January 25, 2024.
Pilumnoididae Guinot & Macpherson 1987
Creators: name: GUINOT, DANIÈLE
name: TAVARES, MARCOS
name: CASTRO, PETER
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Pilumnoididae

description: Family Pilumnoididae   The male gonopore is coxal. The penis emerges from the large gonopore situated on the P5 coxo-sternal condyle in close proximity to the distal extremity of the condyle, more precisely on its anterior margin; the thick and recurved remaining condylar portion articulates on sternite 8 (Guinot 1979a: fig. 21A; Guinot & Macpherson 1987: fig. 1) (see Modalities of penis protection: Condylar protection).
 The precise relationships of the family remain unknown (Guinot & Macpherson 1987), with, however, larval results suggesting affinities with Carpiliidae (Luppi et al. 2010).
description: Published as part of GUINOT, DANIÈLE, TAVARES, MARCOS & CASTRO, PETER, 2013, Significance of the sexual openings and supplementary structures on the phylogeny of brachyuran crabs (Crustacea, Decapoda, Brachyura), with new nomina for higher-ranked podotreme taxa, pp. 1-414 in Zootaxa 3665 (1) on page 134, DOI: 10.11646/zootaxa.3665.1.1, http://zenodo.org/record/5276390
Carcinopsida Casey. There 1916
Creators: name: Reese, Ellen M.
name: Swanson, Alexander P.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Histeridae
Carcinopsida

description: Subgenus Carcinopsida Casey
 Type Species. Paromalus opuntiae LeConte. Designated by Mazur (1984).
 Diagnosis and Comparison with Relatives. Taxa of this subgenus are characterized by the formation of individual ground punctures by a cluster or row of 3–4 micropunctures (Fig. 6), a tristriate lateral disc of the first abdominal ventrite (Fig. 2E), the continuation of the fourth dorsal elytral stria to the base without strongly arching toward the sutural stria, and an unmodified pygidium. The state of the ground punctation is shared with at least some members of the paromaline genus Xestipyge Marseul, but the latter two characters serve to distinguish Carcinopsida from these. Wenzel (in an unpublished key) compared a “sp. # 46” to C. opuntiae, reporting that it has the same ground punctation as C. opuntiae but “different elytral striae [and] only two lateral abdominal striae...”. Unfortunately, specimens labeled with a “46” or matching this description could not be found among the histerids at the Field Museum, where Wenzel’ s unfinished projects are housed.
 Geographic Distribution and Natural History. Two species are distributed from California, Arizona, and southern Texas to northern Mexico and the Baja California Peninsula. They are associated with the necroses of a diversity of cacti and the decaying basal stems of plants in the subfamilies Agavoideae and Nolinoideae.
description: Published as part of Reese, Ellen M. & Swanson, Alexander P., 2017, A Review of the CactophilicCarcinopsMarseul (Coleoptera: Histeridae) of the Sonoran Desert Region, with Descriptions of Six New Species, pp. 159-190 in The Coleopterists Bulletin 71 (1) on page 181, DOI: 10.1649/0010-065X-71.1.159, http://zenodo.org/record/5362679
Quantum Computations with Optical Waveguide Modes
Creators: name: Fu, Jian
Publisher: name: arXiv
Year: 2002
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: A fully optical method to perform any quantum computation with optical waveguide modes is proposed by supplying the prescriptions for a universal set of quantum gates. The proposal for quantum computation is based on implementing a quantum bit with two normal modes of multi-mode waveguides. The proposed universal set of gates has the potential of being more compact and easily realized than other optical implementations, since it is based on planar lightwave circuit technology and can be constructed by using Mach-Zehnder interferometer configurations having semiconductor optical amplifiers with very high refractive nonlinearity in their arms.
description: 9 pages, 5 figures. minor changes
Additional file 2 of The authentication and repatriation of a ceremonial tsantsa to its country of origin (Ecuador)
Creators: name: Byron, Craig D.
name: Kiefer, Adam M.
name: Thomas, Joanna
name: Patel, Sagar
name: Jenkins, Amy
name: Fratino, Anthony L.
name: Anderson, Todd
Publisher: name: figshare
Year: 2021
Subjects: subject: Space Science
subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Additional file 2: Figure S2. Newspaper, Sand, and Ash found inside Mercer tsantsa on Initial Inspection. In this photograph a Spanish language newspaper is depicted, presumably from when it was collected. Close inspection reveals a dusty, charcoal residue that collected in small quantities within the white tray (background). Figure S3. To-Scale 3D Printed Replica of a Repatriated Ecuadorian tsantsa. A) Anterior view of the 3D printed replica. Numbered arrows indicate indentations formed due to pressure applied by fingers during traditional construction B) Locations on the skull that required repairs in the .stl file were clearly visible on the tsantsa replica. C) Image processing to remove the tsantsa hair was necessary to generate a printable .stl file. Removing the hair also removed all stitches. D) Demonstration of finger placement at location 1, 2, and 3, that resulted in indentations in the head. Scale bar is 2.5 cm.