cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 7 of MetaDecoder: a novel method for clustering metagenomic contigs
Creators: name: Liu, Cong-Cong
name: Dong, Shan-Shan
name: Chen, Jia-Bin
name: Wang, Chen
name: Ning, Pan
name: Guo, Yan
name: Yang, Tie-Lin
Publisher: name: figshare
Year: 2022
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Artificial Intelligence and Image Processing
subject: FOS: Computer and information sciences

description: Additional file 7: Supplementary Figure S7. Clustering benchmarks on 24 Human Microbiome Project datasets. The number of identified clusters with contamination ≤ 0.10 and different recall levels were shown. All programs were run with their default parameters. MetaDecoder with minimum sequence length setting to 1 Kb (MetaDecoder1000) was also added for benchmarking. Assessments were evaluated using CheckM (version 1.0.13).
Implications for the origin of dwarf early-type galaxies: a detailed look at the isolated rotating dwarf early-type galaxy CG 611, with ramifications for the Fundamental Plane's (S_K)^2 kinematic scaling and the spin-ellipticity diagram
Creators: name: Graham, Alister W.
name: Janz, Joachim
name: Penny, Samantha J.
name: Chilingarian, Igor V.
name: Ciambur, Bogdan C.
name: Forbes, Duncan A.
name: Davies, Roger L.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Selected from a sample of nine, isolated, dwarf early-type galaxies (ETGs) having the same range of kinematic properties as dwarf ETGs in clusters, we use CG 611 (LEDA 2108986) to address the Nature versus Nurture debate regarding the formation of dwarf ETGs. The presence of faint disk structures and rotation within some cluster dwarf ETGs has often been heralded as evidence that they were once late-type spiral or dwarf irregular galaxies prior to experiencing a cluster-induced transformation into an ETG. However, CG 611 also contains significant stellar rotation (~20 km/s) over its inner half light radius, R_(e,maj)=0.71 kpc, and its stellar structure and kinematics resemble those of cluster ETGs. In addition to hosting a faint young nuclear spiral within a possible intermediate-scale stellar disk, CG 611 has accreted an intermediate-scale, counter-rotating gas disk. It is therefore apparent that dwarf ETGs can be built by accretion events, as opposed to disk-stripping scenarios. We go on to discuss how both dwarf and ordinary ETGs with intermediate-scale disks, whether under (de)construction or not, are not fully represented by the kinematic scaling S_0.5=sqrt{ 0.5(V_rot)^2 + sigma^2 }, and we also introduce a modified spin-ellipticity diagram, lambda(R)-epsilon(R), with the potential to track galaxies with such disks.
description: 15 pages (includes 9 figures and an extensive 2+ page reference list)
Additional file 2: of Maternal restrictive feeding and eating in the absence of hunger among toddlers: a cohort study
Creators: name: Bauer, Katherine
name: Haines, Jess
name: Miller, Alison
name: Rosenblum, Katherine
name: Appugliese, Danielle
name: Lumeng, Julie
name: Kaciroti, Niko
Publisher: name: figshare
Year: 2017
Subjects: subject: Medicine
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Unadjusted Pearson correlation coefficients for maternal restrictive feeding and childrenâ s eating in the absence of hunger at 21, 27, and 33Â months. (DOCX 55Â kb)
Limiting symmetry energy elements from empirical evidence
Creators: name: Agrawal, B. K.
name: Samaddar, S. K.
name: De, J. N.
name: Mondal, C.
name: De, Subhranil
Publisher: name: arXiv
Year: 2017
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: In the framework of an equation of state (EoS) constructed from a momentum and density-dependent finite-range two-body effective interaction, the quantitative magnitudes of the different symmetry elements of infinite nuclear matter are explored. The parameters of this interaction are determined from well-accepted characteristic constants associated with homogeneous nuclear matter. The symmetry energy coefficient $a_2$, its density slope $L_0$, the symmetry incompressibility $K_δ$ as well as the density dependent incompressibility $K(ρ)$ evaluated with this EoS are seen to be in good harmony with those obtained from other diverse perspectives. The higher order symmetry energy coefficients $a_4,~a_6$ etc are seen to be not very significant in the domain of densities relevant to finite nuclei, but gradually build up at supra-normal densities. The analysis carried with a Skyrme-inspired energy density functional obtained with the same input values for the empirical bulk data associated with nuclear matter yields nearly the same results.
description: Accepted in "International journal of Modern Physics E"
Additional file 4: of From ground pools to treeholes: convergent evolution of habitat and phenotype in Aedes mosquitoes
Creators: name: Soghigian, John
name: Andreadis, Theodore
name: Livdahl, Todd
Publisher: name: figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Figure S2. The maximum likelihood phylogeny from an alignment containing only taxa with three or more markers. Scale is in substitutions per site. We still recover Clade A and B from our full analysis in this analysis, containing 104 taxa with high marker coverage. Genera that violate the monophyly of Aedes are highlighted in red. (PDF 217 kb)
New Group V Elemental Bilayers: A Tunable Structure Model with 4,6,8-atom Rings
Creators: name: Kong, Xiangru
name: Li, Linyang
name: Leenaerts, Ortwin
name: Liu, Xiong-jun
name: Peeters, François M.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Two-dimensional (2D) group V elemental materials have attracted widespread attention due to their nonzero band gap while displaying high electron mobility. Using first-principles calculations, we propose a series of new elemental bilayers with group V elements (Bi, Sb, As). Our study reveals the dynamical stability of 4, 6, and 8-atom ring structures, demonstrating their possible coexistence in such bilayer systems. The proposed structures for Sb and As are large-gap semiconductors that are potentially interesting for applications in future nanodevices. The Bi structures have nontrivial topological properties with a large and direct nontrivial band gap. The nontrivial gap is shown to arise from a band inversion at the Brillouin zone center due to the strong intrinsic spin-orbit coupling (SOC) in Bi atoms. Moreover, we demonstrate the possibility to tune the properties of these materials by enhancing the ratio of 6-atom rings to 4 and 8-atom rings, which results in wider nontrivial band gaps and lower formation energies.
A Brief Review on Chronic Asthma
Creators: name: Patil MP*
name: Patil DR
name: Jain AS
name: Shaikh AZ
name: Shaikh SR
name: Pawar SP
Publisher: name: Zenodo
Year: 2024

description: Abstract

Asthma is a chronic condition that mostly affects the lungs. There are 300 million asthma sufferers in the world. This chronic illness claims the lives of 255,000 people annually throughout the world. The symptoms of asthma include wheezing, chest tightness, coughing, and shortness of breath when the lung’s airways enlarge and narrow. Inflammation (swelling) in the airways is what causes asthma. The muscles surrounding the airways tighten and the lining of the airways expands during an asthma episode. The amount of air that can enter the airway is lowered as a result. Breathing allergens or triggers can cause asthma symptoms in people with sensitive airways. This review mostly discusses the primary causes, signs, a diagnosis, the necessary precautions to prevent future progression, and the causes and treatments for persistent asthma. Asthma is treated with a variety of herbal remedies, including ginseng, ginko biloba, licorice, and cinnamon. In the future, we can use machine learning and artificial intelligence (AI) programs to cure asthma.

Keywords: Asthma, chronic, Inflammation, ginko biloba, licorice, cinnamon.
Normal forms on contracting foliations: smoothness and homogeneous structure
Creators: name: Kalinin, Boris
name: Sadovskaya, Victoria
Publisher: name: arXiv
Year: 2016
Subjects: subject: Dynamical Systems (math.DS)
subject: FOS: Mathematics
subject: 37D30, 37D10, 34C20

description: In this paper we consider a diffeomorphism $f$ of a compact manifold $M$ which contracts an invariant foliation $W$ with smooth leaves. If the differential of $f$ on $TW$ has narrow band spectrum, there exist coordinates $H _x:W_x\to T_xW$ in which $f|_W$ has polynomial form. We present a modified approach that allows us to construct maps $H_x$ that depend smoothly on $x$ along the leaves of $W$. Moreover, we show that on each leaf they give a coherent atlas with transition maps in a finite dimensional Lie group. Our results apply, in particular, to $C^1$-small perturbations of algebraic systems.
description: 16 pages. arXiv admin note: text overlap with arXiv:1604.03963
Additional file 1 of Inhibition of Hsp110-STAT3 interaction in endothelial cells alleviates vascular remodeling in hypoxic pulmonary arterial Hypertension model
Creators: name: Zhao, Congke
name: Le, Xiangyang
name: Li, Mengqi
name: Hu, Yuanbo
name: Li, Xiaohui
name: Chen, Zhuo
name: Hu, Gaoyun
name: Hu, Liqing
name: Li, Qianbin
Publisher: name: figshare
Year: 2023
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Cancer

description: Supplementary Material 1
Additional file 1: Table S1. of A pilot study of an autologous tumor-derived autophagosome vaccine with docetaxel in patients with stage IV non-small cell lung cancer
Creators: name: Sanborn, Rachel
name: Ross, Helen
name: Aung, Sandra
name: Acheson, Anupama
name: Moudgil, Tarsem
name: Puri, Sachin
name: Hilton, Traci
name: Fisher, Brenda
name: Coffey, Todd
name: Paustian, Christopher
name: Neuberger, Michael
name: Walker, Edwin
name: Hu, Hong-Ming
name: Urba, Walter
name: Fox, Bernard
Publisher: name: figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Patient baseline characteristics. (DOCX 11Â kb)
Rainbow Trapping in a Chirped Three-Dimensional Photonic Crystal
Creators: name: Hayran, Zeki
name: Kurt, Hamza
name: Staliunas, Kestutis
Publisher: name: arXiv
Year: 2017
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: Light localization and intensity enhancement in a woodpile layer-by-layer photonic crystal, whose interlayer distance along the propagation direction is gradually varied, has been theoretically predicted and experimentally demonstrated. The phenomenon is shown to be related to the progressive slowing down and stopping of the incoming wave, as a result of the gradual variation of the local dispersion. The light localization is chromatically resolved, since every frequency component is stopped and reflected back at different spatial positions. It has been further discussed that the peculiar relation between the stopping distance and the wave vector distribution can substantially increase the enhancement factor to more than two orders of magnitude. Compared to previously reported one- and two-dimensional photonic crystal configurations, the proposed scheme has the advantage of reducing the propagation losses by providing a three-dimensional photonic bandgap confinement in all directions. The slowing down and localization of waves inside photonic media can be exploited in many applications that requires enhanced interaction of light and matter.
description: 13 pages, 7 figures
Measurement of the stellar $^{58}$Ni$(n,γ)^{59}$Ni cross section with AMS
Creators: name: Ludwig, Peter
name: Rugel, Georg
name: Dillmann, Iris
name: Faestermann, Thomas
name: Fimiani, Leticia
name: Hain, Karin
name: Korschinek, Gunther
name: Lachner, Johannes
name: Poutivtsev, Mikhail
name: Knie, Klaus
name: Heil, Michael
name: Käppeler, Franz
name: Wallner, Anton
Publisher: name: arXiv
Year: 2017
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: The $^{58}$Ni$(n,γ)^{59}$Ni cross section was measured with a combination of the activation technique and accelerator mass spectrometry (AMS). The neutron activations were performed at the Karlsruhe 3.7 MV Van de Graaff accelerator using the quasi-stellar neutron spectrum at $kT=25$ keV produced by the $^7$Li($p,n$)$^7$Be reaction. The subsequent AMS measurements were carried out at the 14 MV tandem accelerator of the Maier-Leibnitz-Laboratory in Garching using the Gas-filled Analyzing Magnet System (GAMS). Three individual samples were measured, yielding a Maxwellian-averaged cross section at $kT=30$ keV of $\langleσ\rangle_{30\text{keV}}$= 30.4 (23)$^{syst}$(9)$^{stat}$ mbarn. This value is slightly lower than two recently published measurements using the time-of-flight (TOF) method, but agrees within the uncertainties. Our new results also resolve the large discrepancy between older TOF measurements and our previous value.
description: 13 pages, 4 figures; accepted for publication in Phys. Rev. C (2017)
Knowledge utilization: international agricultural research communication
Creators: name: Brien, J. P.
Publisher: name: Macquarie University
Year: 2022
Subjects: Other education not elsewhere classified

description: The international agricultural research system has provided the technological base for most of the unprecedented increases in food production in the developing countries over the past two decades. -- Rice is the principal cereal grain consumed by most of the world's population, and the International Rice Research Institute, located in the Philippines, has developed new varieties which have contributed significantly towards meeting expanding food needs. -- The generation of scientific and technological information is the prime task of agricultural research, and the communication of such information occurs as a precursor to its utilization. An intricate scientific communication network exists for this purpose. -- Science places important, but not sole, emphasis on the communication of information and knowledge by way of publication. -- The principal aims of this case study were to achieve a deeper understanding of the formal scientific communication network emanating through publications which had been originated by scientists at the Institute, and to clarify the nature of the subsequent utilization of rice science knowledge. The investigation employed citation analysis methodology. -- The study identified the primary importance of basic research as a background to applied science, and information contained in significant research publications was shown to be utilized later by other scientists in support of their own research investigations. -- Publication of international agricultural science ordinarily follows late in an extended sequence which follows the completion of experiments, and the early, and typically oral, dissemination of scientific findings. -- Proceeding with the final publication of information gained from research can be viewed as a process of assimilation, wherein the experimental results and conclusions, should, by implication, be accepted as valid scientific knowledge. -- The communication of scientific information is a critical component in the utilization of international agricultural research knowledge.
Additional file 8 of MetaDecoder: a novel method for clustering metagenomic contigs
Creators: name: Liu, Cong-Cong
name: Dong, Shan-Shan
name: Chen, Jia-Bin
name: Wang, Chen
name: Ning, Pan
name: Guo, Yan
name: Yang, Tie-Lin
Publisher: name: figshare
Year: 2022
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Artificial Intelligence and Image Processing
subject: FOS: Computer and information sciences

description: Additional file 8: Supplementary Figure S8. Clustering benchmarks on a cohort of T2D study. The number of identified clusters with contamination ≤ 0.05 and different recall levels were shown. All programs were run with their default parameters. MetaDecoder with minimum sequence length setting to 1 Kb (MetaDecoder1000) was also added for benchmarking. Assessments were evaluated using CheckM (version 1.0.13).
Dancing with the Scientists: The Costs of Piddling in Science without PIDs
Creators: name: Kaiser, Kathryn
Publisher: name: Zenodo
Year: 2020
Subjects: findability
structured metadata
systematic reviews

description: Keynote talk given 30 January 2020 in Lisbon, Portugal
description: This is a talk about the issues common in biomedical research when trying to use rigorous methods to conduct systematic reviews. Metadata solutions are proposed.
Near-Infrared Knots and Dense Fe Ejecta in the Cassiopeia A Supernova Remnant
Creators: name: Lee, Yong-Hyun
name: Koo, Bon-Chul
name: Moon, Dae-Sik
name: Burton, Michael G.
name: Lee, Jae-Joon
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We report the results of broadband (0.95--2.46 $μ$m) near-infrared spectroscopic observations of the Cassiopeia A supernova remnant. Using a clump-finding algorithm in two-dimensional dispersed images, we identify 63 "knots" from eight slit positions and derive their spectroscopic properties. All of the knots emit [Fe II] lines together with other ionic forbidden lines of heavy elements, and some of them also emit H and He lines. We identify 46 emission line features in total from the 63 knots and measure their fluxes and radial velocities. The results of our analyses of the emission line features based on principal component analysis show that the knots can be classified into three groups: (1) He-rich, (2) S-rich, and (3) Fe-rich knots. The He-rich knots have relatively small, $\lesssim 200~{\rm km~s}^{-1}$, line-of-sight speeds and radiate strong He I and [Fe II] lines resembling closely optical quasi-stationary flocculi of circumstellar medium, while the S-rich knots show strong lines from O-burning material with large radial velocities up to $\sim 2000~{\rm km~s}^{-1}$ indicating that they are supernova ejecta material known as fast-moving knots. The Fe-rich knots also have large radial velocities but show no lines from O-burning material. We discuss the origin of the Fe-rich knots and conclude that they are most likely "pure" Fe ejecta synthesized in the innermost region during the supernova explosion. The comparison of [Fe II] images with other waveband images shows that these dense Fe ejecta are mainly distributed along the southwestern shell just outside the unshocked $^{44}$Ti in the interior, supporting the presence of unshocked Fe associated with $^{44}$Ti.
description: 38 pages, 12 figures, 4 tables; accepted in ApJ on 2017 Feb. 11
Additional file 1: of Preliminary testing of the reliability and feasibility of SAGE: a system to measure and score engagement with and use of research in health policies and programs
Creators: name: Makkar, Steve
name: Williamson, Anna
name: DâEste, Catherine
name: Redman, Sally
Publisher: name: figshare
Year: 2017
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: FOS: Biological sciences

description: SAGE Interview. (PDF 250Â kb)
Additional file 9 of MetaDecoder: a novel method for clustering metagenomic contigs
Creators: name: Liu, Cong-Cong
name: Dong, Shan-Shan
name: Chen, Jia-Bin
name: Wang, Chen
name: Ning, Pan
name: Guo, Yan
name: Yang, Tie-Lin
Publisher: name: figshare
Year: 2022
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Artificial Intelligence and Image Processing
subject: FOS: Computer and information sciences

description: Additional file 9: Supplementary Figure S9. Clustering benchmarks on a cohort of T2D study. The number of identified clusters with contamination ≤ 0.10 and different recall levels were shown. All programs were run with their default parameters. MetaDecoder with minimum sequence length setting to 1 Kb (MetaDecoder1000) was also added for benchmarking. Assessments were evaluated using CheckM (version 1.0.13).
Global bifurcation map of the homogeneus states in the Gray-Scott model
Creators: name: Delgado, Joaquin
name: Martinez, Lucia Ivonne Hernandez
name: Lopez, Javier Perez
Publisher: name: arXiv
Year: 2017
Subjects: subject: Dynamical Systems (math.DS)
subject: FOS: Mathematics

description: We study the spatially homogeneous time dependent solutions and their bifurcations of the Gray-Scott model. We find the global map of bifurcations by a combination of rigorous verification of the existence of Takens Bogdanov and a Bautin bifurcations, in the space of two parameters k and F. With the aid of numerical continuation of local bifurcation curves we give a global description of all the possible bifurcations
description: 24 pages, 12 figures
Additional file 1: of Maternal restrictive feeding and eating in the absence of hunger among toddlers: a cohort study
Creators: name: Bauer, Katherine
name: Haines, Jess
name: Miller, Alison
name: Rosenblum, Katherine
name: Appugliese, Danielle
name: Lumeng, Julie
name: Kaciroti, Niko
Publisher: name: figshare
Year: 2017
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Infant Feeding Styles Questionnaire sub-scale items. (DOCX 11Â kb)
title: kuwanda huuya: mutualising as intercultural abun-dance in a teaching practice of listening
Creators: name: Sithole, Tawona Tennyson
Publisher: name: University of Glasgow
Year: 2024

description: Whilst historical ‘Western’ domination is coming under pressure from decolonising agendas for research and teaching, the prevailing social scientific models for both are traditionally located in well-funded and variously bureaucratised institutions in the ‘Global North’, with rare exceptions. Intercultural education worldwide is dominated by teaching derived from knowledge and, consequently, pedagogic approaches formed predominantly from the ‘Global North’, or in contradistinction to what was viewed as inferior knowledge in the ‘Global South’.

With the renewed turn to decolonising and holistic models of integration, alternative approaches and pedagogies are required. This thesis by publication draws on one example - daré - a gathering in the Zimbabwean context, for communing, including for education. Augmented by ritual, human and non-human forms all considered to have anima, daré is classified as ‘indigenous’ knowledge. reciting/resighting the ancient saying, kuwanda huuya, I argue for mutuality, for declassifying daré from this imposed category. Through my mutualising educational practice, I am claiming the place of my ancestors in the open space of learning and teaching worldwide. As this thesis will show, daré is a primarily aural and oral, sensory mode of kufunda/learning.

This thesis consists of a portfolio of work made in daré knowledge practice over a decade and a 12,000-word exegetical essay, which describes the introduction of daré into the public space, the work produced, and the changes experienced by audiences in those intercultural encounters with models of learning from beyond the ‘Global North’.

The work presented has been subject to peer review as academic publication and/or to the commissioning processes of the arts and cultural mechanisms for publication. By fusing the work in a portfolio, the thesis claims its contribution to knowledge in and for education and its place in decolonising arts as intercultural education.
An Optical Catalog of Galaxy Clusters Obtained from an Adaptive Matched Filter Finder Applied to SDSS DR9 Data
Creators: name: Banerjee, Panchajanya
name: Szabo, Thad
name: Pierpaoli, Elena
name: Franco, Gerardo
name: Ortiz, Maria
name: Oramas, Aris
name: Tornello, Brianna
Publisher: name: arXiv
Year: 2017
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We present a new galaxy cluster catalog constructed from SDSS DR9 using an Adaptive Matched Filter technique. Our main catalog has 46,479 galaxy clusters with richness $Λ_{200} > 20$ in the redshift range 0.045 $\le z 40$, while WHL matches $\geq$70$\%$ of these missed clusters on average. We also match the AMF catalog with the X-ray cluster catalogs BAX, MCXC and a combined catalog from NORAS and REFLEX. We consistently obtain a greater number of one-to-one matches for X-ray clusters across higher luminosity bins ($L_x>6 \times 10^{44}$ ergs/sec) than redMaPPer while WHL matches the most clusters overall. For the most luminous clusters ($L_x>8$), our catalog performs equivalently to WHL. This new catalog provides a wider sample than redMaPPer while retaining many fewer objects than WHL.
description: Submitted to New Astronomy
Additional file 6: of Genome-wide analysis of the bHLH gene family in Chinese jujube (Ziziphus jujuba Mill.) and wild jujube
Creators: name: Li, Hongtai
name: Gao, Weilin
name: Xue, Chaoling
name: Zhang, Yao
name: Liu, Zhiguo
name: Zhang, Yu
name: Meng, Xianwei
name: Liu, Mengjun
name: Zhao, Jin
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Figure S5. The major functional domain of ZjbHLH proteins. (DOC 384 kb)
Evolutionary analysis of buffalo sterol regulatory element-binding factor (SREBF) family genes and their affection on milk traits
Creators: name: Ye, Tingzhu
name: Yuan, Jing
name: Raza, Sayed Haidar Abbas
name: Deng, Tingxian
name: Yang, Lv
name: Ahmad, Muhammad Jamil
name: Hosseini, Seyed Mahdi
name: Zhang, Xinxin
name: Alamoudi, Muna O
name: AlGabbani, Qwait
name: Alghamdi, Youssef S
name: Chen, Chao
name: Liang, Aixin
name: Schreurs, Nicola M.
name: Yang, Liguo
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: The sterol regulatory element-binding factor (SREBF) genes are a vital group of proteins binding to the sterol regulatory element 1 (SRE-1) regulating the synthesis of fatty acid. Two potential candidate genes (SREBF1 and SREBF2) have been identified as affecting milk traits. This study aims to identify the SREBF family of genes and find candidate markers or SREBF genes influencing lactation production in buffalo. A genome-wide study was performed and identified seven SREBF genes randomly distributed on 7 chromosomes and 24 protein isoforms in buffalos. The SREBF family of genes were also characterized in cattle, goat, sheep and horse, and using these all-protein sequences, a phylogenetic tree was built. The SREBF family genes were homologous between each other in the five livestock. Eight single nucleotide polymorphisms (SNPs) within or near the SREBF genes in the buffalo genome were identified and at least one milk production trait was associated with three of the SNP. The expression of SREBF genes at different lactation stages in buffalo and cattle from published data were compared and the SREBF genes retained a high expression throughout lactation with the trend being the same for buffalo and cattle. These results provide valuable information for clarifying the evolutionary relationship of the SREBF family genes and determining the role of SREBF genes in the regulation of milk production in buffalo.
Dipping coating machine
Creators: name: Bailes, William
Publisher: name: Macquarie University
Year: 2022
Subjects: Other education not elsewhere classified

description: Conventional dipping techniques for components are based around submerging and removal from the liquor solely in the vertical plane. The project sought to confirm if improvement in film thickness and quality could be achieved through adoption of alternative dipping strategies including involving changes in speed, angularity and rotation to improve film thickness and uniformity. Two new designs of dipping machines were developed, one around a robotic arm submersion technique and the other around a vertical linear travel submersion system, and a comparison was made against conventional dipping machines available in the university laboratory. The prototype machines showed promise over the current dipping machine technology available in the lab at the university.
Additional file 3: of From ground pools to treeholes: convergent evolution of habitat and phenotype in Aedes mosquitoes
Creators: name: Soghigian, John
name: Andreadis, Theodore
name: Livdahl, Todd
Publisher: name: figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Pharmacology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: Figure S1. The maximum likelihood phylogeny from RAxML with all taxa included. Genera that violate the monophyly of Aedes are highlighted in red. The tree has been rooted leading to the branch for Culex quinquefasciatus. Scale is in substitutions per site. Calibration points used in this study have been indicated with numbered arrows. Details on calibration points are given in our methods. 1: The common ancestor of Culex and Aedes between 226.22 and 172.28 MYA. 2: The common ancestor of all aedine mosquitoes between 155.71 and 90.18 MYA. 3: The common ancestor of all Aedes (Ochlerotatus) species, with a minimum age of 33.9 MYA and a maximum age of 94.29 MYA. (PDF 401 kb)
Ruggiero Federica_ Per una definizione di "ironia intertestuale". Testi e rapporti intersoggettivi ironici in absentia
Creators: name: Ruggiero, Federica
Publisher: name: Zenodo
Year: 2024

description: The file presents the research project of Federica Ruggiero concerning the study of new type of irony that can be labelled as "intertextual irony"
Predicting shared-car use and examining nonlinear effects using gradient boosting regression trees
Creators: name: Wang, Tao
name: Hu, Songhua
name: Jiang, Yuan
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified

description: Flexible drop-off and pick-up (one-way) carsharing programs provide users with high levels of convenience but meanwhile incurs spatiotemporal imbalances in shared-cars distribution. Predicting shared-car use helps recognize system imbalances beforehand while identifying determinants related to shared-car use helps operators efficiently implement relocation strategies. In this study, a gradient boosting regression model (GBRT) is employed to predict shared-car use at a station level, and partial dependence plots (PDPs) are employed to examine nonlinear relationships between shared-car use and various predictors. Results show: (1) GBRTs predict shared-car use with a high level of accuracy (MSE: 1.1069–1.1648). (2) PDPs present highly consistent results with relationships derived from the traditional statistical model; (3) Time-varying variables account for 89.30%–86.84% importance in shared-cars use prediction, suggesting these variables can greatly enhance prediction accuracy; (4) Other variables like built environment, station attributes, and socioeconomic features, also account for some importance and can enhance prediction accuracy. Findings help carsharing operators accurately predict the station-level shared-car use and optimally identify the best locations for stations, and thus maintain the operational efficiency of carsharing programs.
Additional file 4: Figure S2. of TSPmap, a tool making use of traveling salesperson problem solvers in the efficient and accurate construction of high-density genetic linkage maps
Creators: name: J. Monroe
name: Allen, Zachariah
name: Tanger, Paul
name: Mullen, Jack
name: Lovell, John
name: Moyers, Brook
name: Whitley, Darrell
name: McKay, John
Publisher: name: figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Plant Biology

description: Linkage maps generated by TSPmap using marker datasets from A. Arabidopsis thaliana [26] and B. & C. rice [27] compared to those generated by JoinMap. (DOCX 213Â kb)
Association Between Resting Frontal EEG Alpha Asymmetry and Personality: Moderation by Experimenter Sex and Attractiveness
Creators: name: Short, Cassie
name: Wacker, Jan
name: Beauducel, André
name: Hennig, Juergen
name: Hewig, Johannes
name: Hildebrandt, Andrea
name: Härpfer, Kai
name: Kührt, Corinna
name: Lange, Leon
name: Mueller, Erik
name: Munk, Aisha
name: Osinsky, Roman
name: Paul, Katharina
name: Carsten, Hannes
name: Porth, Elisa
name: Riesel, Anja
name: Rodrigues, Johannes
name: Rommerskirchen, Lena
name: Scheffel, Christoph
name: Stahl, Jutta
name: Strobel, Alexander
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Personality and Social Contexts
subject: Experimental Analysis of Behavior
subject: Biological Psychology
subject: Cognition and Perception
subject: Social and Behavioral Sciences
subject: Psychology
subject: FOS: Psychology
subject: Approach Motivation
subject: EEG
subject: Trait-State Interaction

description: Preregistration of Hypothesis in the CoScience Project.
Diacylglycerol acyltransferase 2 promotes the adipogenesis of intramuscular preadipocytes in goat
Creators: name: Yang, Changheng
name: Li, Qi
name: Lin, Yaqiu
name: Wang, Yong
name: Shi, Hengbo
name: Xiang, Hua
name: Zhu, Jiangjiang
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Diacylglycerol acyltransferase 2 (DGAT2) is the key enzyme that catalyzes the last step of triglyceride synthesis. However, its role in intramuscular fat (IMF) deposition in goat remains unclear. The purpose of this study was to explore the role of DGAT2 in regulating goat IMF deposition. In the present study, the expression of DGAT2 was highest in goat triceps brachii, and highest on the first day after oleic acid induction in goat intramuscular preadipocytes. The overexpression of DGAT2 promoted the accumulation of lipid droplets and triglyceride synthesis, accompanied by the expression upregulation of DGAT1, TIP47, ACC and ACOX1 significantly, and expression downregulation of AGPAT6, LPIN1, LPL, HSL, ATGL and ADRP significantly. In contrast, the silencing of DGAT2 decreased the accumulation of lipid droplets, inhibited the expression of DGAT1, GPAM, ADRP, AGPAT6, LPL, HSL, ATGL, ACC, FASN, ACOX1 significantly, and enhanced that of TIP47 significantly. Overall, these data underscore DGAT2 may play a potentially important role in lipid droplets formation and triglyceride accumulation, so as to maintain intramuscular fat deposition, beyond triglyceride synthesis in goat.
Secular Orbit Evolution in Systems with a Strong External Perturber - A Simple and Accurate Model
Creators: name: Andrade-Ines, Eduardo
name: Eggl, Siegfried
Publisher: name: arXiv
Year: 2017
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: We present a semi-analytical correction to the seminal solution for the secular motion of a planet's orbit under gravitational influence of an external perturber derived by Heppenheimer (1978). A comparison between analytical predictions and numerical simulations allows us to determine corrective factors for the secular frequency and forced eccentricity in the co-planar restricted three-body problem. The correction is given in the form of a polynomial function of the system's parameters that can be applied to first-order forced eccentricity and secular frequency estimates. The resulting secular equations are simple, straight forward to use and improve the fidelity of Heppenheimer's solution well beyond higher-order models. The quality and convergence of the corrected secular equations are tested for a wide range of parameters and limits of its applicability are given.
description: 13 pages, 6 figures, accepted for publication in The Astronomical Journal
Additional file 2: of From ground pools to treeholes: convergent evolution of habitat and phenotype in Aedes mosquitoes
Creators: name: Soghigian, John
name: Andreadis, Theodore
name: Livdahl, Todd
Publisher: name: figshare
Year: 2017
Subjects: subject: Molecular Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: supplement_textv1. Supplemental methods, results, and discussion. This document provides additional details on our methods, as well as consideration of our phylogenetic results and a discussion of their significance in this supplemental material. (DOCX 22 kb)
Additional file 8: of Genome-wide analysis of the bHLH gene family in Chinese jujube (Ziziphus jujuba Mill.) and wild jujube
Creators: name: Li, Hongtai
name: Gao, Weilin
name: Xue, Chaoling
name: Zhang, Yao
name: Liu, Zhiguo
name: Zhang, Yu
name: Meng, Xianwei
name: Liu, Mengjun
name: Zhao, Jin
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Table S3. The primers of ZjbHLH genes used in this study. (DOC 142 kb)
Decoherence and degradation of squeezed states in quantum filter cavities
Creators: name: Kwee, Patrick
name: Miller, John
name: Isogai, Tomoki
name: Barsotti, Lisa
name: Evans, Matthew
Publisher: name: arXiv
Year: 2017
Subjects: subject: Optics (physics.optics)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Squeezed states of light have been successfully employed in interferometric gravitational-wave detectors to reduce quantum noise, thus becoming one of the most promising options for extending the astrophysical reach of the generation of detectors currently under construction worldwide. In these advanced instruments, quantum noise will limit sensitivity over the entire detection band. Therefore, to obtain the greatest benefit from squeezing, the injected squeezed state must be filtered using a long-storage-time optical resonator, or "filter cavity", so as to realise a frequency dependent rotation of the squeezed quadrature. Whilst the ultimate performance of a filter cavity is determined by its storage time, several practical decoherence and degradation mechanisms limit the experimentally achievable quantum noise reduction. In this paper we develop an analytical model to explore these mechanisms in detail. As an example, we apply our results to the 16 m filter cavity design currently under consideration for the Advanced LIGO interferometers.
Dietary supplementation of Aloe vera extract modulates rumen microbes and improves the functional food value of milk by altering phenolic content, antioxidant capacity, and fatty acid profile in lactating goats
Creators: name: Banakar, P. S.
name: Kumar, Sachin
name: Varada, Vinay Venkatesh
name: Dixit, Sonam
name: Tyagi, Nitin
name: Tyagi, Amrish Kumar
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Cancer

description: Twenty-four cross-breed (Alpine × Beetal) lactating goats (average body weight: 37.5 ± 2.7 kg and milk yield: 1.78 ± 0.31 kg/day) were chosen for the ninety days duration of the experiment and divided into three groups following a completely randomized design. Group I acted as control (T0) and received only a basal diet as per requirement, whereas group II (T1) and group III (T2) received basal diet added with Aloe vera extract at 2% and 4% of dry matter intake (DMI), respectively. Total phenolic compounds (TPC) and milk antioxidant status were higher (p < 0.05) in T1 and T2 than T0. Relative abundance of methanogen, protozoa, Butyrivibrio proteoclasticus, and Ruminococcus flavefaciens in the rumen were lower, while Butyrivibrio fibrisolvens population was higher (p < 0.05) in T2 and T1 compared to T0. Saturated fatty acids levels in milk were lower, whereas different polyunsaturated fatty acids levels were higher (p < 0.05) in T1 and T2 than T0. Nutritional indices of milk increased in both supplemented groups. Overall, it may be concluded that dietary supplementation of Aloe vera extract at 2% and 4% of DMI may enhance the functional characteristics of milk by boosting TPC and antioxidant status, as well as the FA profile and nutritional quality indices of milk fat.
Additional file 3 of LncRNA LINC00461 exacerbates myocardial ischemia–reperfusion injury via microRNA-185-3p/Myd88
Creators: name: Gao, Feng
name: Wang, Xiaochen
name: Fan, Tingting
name: Luo, Zhidan
name: Ma, Mengqing
name: Hu, Guangquan
name: Li, Yue
name: Liang, Yi
name: Lin, Xianhe
name: Xu, Banglong
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified

description: Additional file 3: Table S1. Primer sequences for qPCR.
Additional file 3: Table S3. of Association between mammographic breast density and histologic features of benign breast disease
Creators: name: Ghosh, Karthik
name: Vierkant, Robert
name: Frank, Ryan
name: Winham, Stacey
name: Visscher, Daniel
name: Pankratz, Vernon
name: Scott, Christopher
name: Brandt, Kathleen
name: Sherman, Mark
name: Radisky, Derek
name: Frost, Marlene
name: Hartmann, Lynn
name: Degnim, Amy
name: Celine Vachon
Publisher: name: figshare
Year: 2017
Subjects: subject: Biophysics
subject: Space Science
subject: Medicine
subject: Molecular Biology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Plant Biology
subject: FOS: Biological sciences
subject: Computational Biology

description: Association between mammographic breast density and benign breast findings for the 2672 women with parenchymal pattern density measures. (DOCX 20 kb)
Automaticity of one-relator semigroups with length less than or equal to three
Creators: name: Chen, Yuqun
name: Wu, Haibin
name: Xie, Honglian
Publisher: name: arXiv
Year: 2017
Subjects: subject: Group Theory (math.GR)
subject: FOS: Mathematics

description: The main results of this paper is to give a complete characterization of the automaticity of one-relator semigroups with length less than or equal to three. Let $S=sgp\langle A|u=v\rangle$ be a semigroup generated by a set $A=\{a_1,a_2,\dots,a_n\},\ n\in \mathbb{N}$ with defining relation $u=v$, where $u,v\in A^*$ and $A^*$ is the free monoid generated by $A$. Such a semigroup is called a one-relator semigroup. Suppose that $|v|\leq|u|\leq3$, where $|u|$ is the length of the word $u$. Suppose that $a,b\in A,\ a\neq b$. Then we have the following: (1) $S$ is prefix-automatic if $u=v\not\in \{aba=ba,\ aab=ba,\ abb=bb\}$. Moreover, if $u=v\in \{aba=ba,\ aab=ba,\ abb=bb\}$ then $S$ is not automatic. (2) $S$ is biautomatic if one of the following holds: (i) $|u|=3,\ |v|=0$, (ii) $|u|=|v|=3$, (iii) $|u|=2$ and $u=v\not\in \{ab=a,\ ab=b\}$. Moreover, if $u=v\in \{ab=a,\ ab=b\}$ then $S$ is not biautomatic.
description: 44 pages
A Low Cost, Controllable Chamber for Simulating Low Oxygen Environments
Creators: name: Marchus, Colin
name: Knudson, Jacob
name: Morrison, Alexandra
name: Pancheri, Nick
name: Shrestha, Dev
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Molecular, Cellular, and Tissue Engineering
subject: Biomedical Devices and Instrumentation
subject: Biological Engineering
subject: Engineering
subject: Biomedical Engineering and Bioengineering

description: This product is a low-cost, controllable hypoxia chamber. These files detail necessary components for the construction of the chamber & control system.
Additional file 1 of Evaluation of the effectiveness regarding the participation of pharmacists in perioperative blood glucose management via the iGMS: a pilot RCT
Creators: name: Song, Jinfang
name: Pan, Xiaojun
name: Chen, Ya
name: Ding, Yongjuan
name: Li, Xia
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Supplementary Material 1
MOESM1 of Many, more, most: four risk profiles of adolescents in residential care with major psychiatric problems
Creators: name: Ruijter, Elisabeth Janssen-De
name: Mulder, Eva
name: Vermunt, Jeroen
name: Chijs Van Nieuwenhuizen
Publisher: name: figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1: Table S1. Differences between the classes in demographic and admission characteristics. Table S2. Differences between the classes in psychopathology and substance use. Table S3. Differences between the classes in criminal behaviour and Table S4. Differences between the classes in life events.