Additional file 1 of Interspecies variation of larval locomotion kinematics in the genus Drosophila and its relation to habitat temperature
Creators: name: Matsuo, Yuji
name: Nose, Akinao
name: Kohsaka, Hiroshi
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology

description: Additional file 1: Figure S1. The negative correlation between the crawling speed and bend probability is robust to the angle threshold for the definition of bend. (A-C) Scatter plots of the bend probability at 24°C against the crawling speed at 24°C. (A) The angle threshold for bend was 10 degrees. (B) The threshold was 20 degrees. (C) The threshold was 30 degrees. Median ± sem was shown. B was the same panel as Figure 3C represented here for comparison. (D) Scatter plot of the median of absolute bend angle at 24°C against the crawling speed at 24°C. The red lines showed the linear regression functions and the shaded areas represented the 95% confidence band. The point estimates of the Pearson correlation and its 95% confidence intervals were − 0.80 and [-0.95, -0.39] in A, -0.76 and [-0.94, -0.30] in B, -0.71 and [-0.92, -0.19] in C, and -0.66 and [-0.90, -0.11] in D. Figure S2. Interspecies comparison between larva length and kinematics parameters. (A) Axial body length of larvae of the 11 species. Sample numbers were the following: Dvir: n=69; Dmel: n=72; Dmoj: n=82; Dper: n=76; Dpse: n=60; Dsec: n=68; Dwil: n=66; Dere: n=69; Dmau: n=69; Dana: n=68; Dyak: n=56. (B) Scatter plot of the bend probability at 24°C against the larva length of the 11 species. (C) Scatter plot of the crawling speed at 24°C against the larva length of the 11 species. In B and C, median ± sem was shown. The red lines showed the linear regression functions and the shaded areas represented the 95% confidence band. The point estimates of the Pearson correlation and its 95% confidence intervals were 0.55 and [-0.07, 0.87] in B and 0.04 and [-0.57, 0.63] in C. Figure S3. World maps of histograms of habitat temperature of the Drosophila species. The top of each panel showed a map of the habitat of the labelled species. The bottom on each panel showed a histogram of minimum (green) and maximum (magenta) temperatures within the habitat. Asterisks denoted the warmest peak in the minimum habitat temperature. The temperature at the peak was called Tmin in this study. Figure S4. Relationship between the kinematics of larval locomotion and the range of habitat temperature of the Drosophila species (A) Scatter plot of the bend probability speed at 24°C against the range of habitat temperature of the 11 species. (B) Scatter plot of the crawling speed probability at 24°C against the larva length of the 11 species. Median ± sem was shown. The red lines showed the linear regression functions and the shaded areas represented the 95% confidence band. The point estimates of the Pearson correlation and its 95% confidence intervals were 0.65 and [0.08, 0.90] in A and -0.69 and [-0.91, -0.15] in B. Figure S5. Bend probability in the 11 Drosophila species at 40°C. (A) Bend probability of the 11 species at 32°C and 40°C. The data at 32°C were the same as in Figure 4A. (B) Scatter plot of the bend probability at 40°C against at 32°C. Sample numbers at 40°C were the following: Dvir: n=20; Dmel: n=28; Dmoj: n=23; Dper: n=21; Dpse: n=16; Dsec: n=27; Dwil: n=27; Dere: n=22; Dmau: n=26; Dana: n=23; Dyak: n=20. Sample numbers at 32°C were described in the legend of Figure 4. Median ± sem was shown in B. Figure S6. Crawling speed in the 11 Drosophila species at 40°C. (A) Crawling speed of the 11 species at 32°C and 40°C. The data at 32°C were the same as in Figure 5A. (B) Scatter plot of the crawling speed at 40°C against at 32°C. Sample numbers at 40°C were the following: Dvir: n=20; Dmel: n=28; Dmoj: n=23; Dper: n=21; Dpse: n=16; Dsec: n=27; Dwil: n=27; Dere: n=22; Dmau: n=26; Dana: n=23; Dyak: n=20. Sample numbers at 32°C were described in the legend of Figure 5. Median ± sem was shown in B. Figure S7. Phylogenetic analyses of larval locomotion based on distinct prior models. (A) Phylogenetic tree estimated from Bayesian inference with an uncorrelated exponential (UCED) relaxed-clock model as the prior. Values of each branch denoted the range of 95% highest posterior density of the inference of the evolution rates shown in Figure 11A. (B and C) Phylogenetic tree estimated from Bayesian inference with an uncorrelated gamma (UCG) relaxed clock model. Values of each branch showed the evolution rate (B) and its range of 95% highest posterior density (C).