cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Food security through homestead vegetable production in the smallholder agricultural improvement project (SAIP) area
Creators: name: Rahman, F.M.M
name: Mortuza, M.G.G
name: Rahman, M.T
name: Rokonuzzaman3, M.
name: Rahman, F.M.M
name: Mortuza, M.G.G
name: Rahman, M.T
name: Rokonuzzaman3, M.
Publisher: name: Unknown
Year: 2008
Subjects: Agricultural and Food Policy
Food Security and Poverty
Land Economics/Use

description: The purpose of the study was to determine food security through homestead vegetable production. The study was conducted in the Bhaluka, Trishal and Gaforgaon upazilas of Mymensingh district, which were the project areas of the Smallholder Agricultural Improvement Project (SAIP). Sixty (60) respondents were randomly selected from the beneficiaries of SAIP. Data were collected by face-to-face interview with the help of interview schedule. Most of the respondents were middle-aged having small farm size and primary level education. Vegetable production, consumption and calorie uptake of the respondent were increased by 56%, 55% and 68%, respectively, after implementation of demonstration. All the respondents are following the ‘Kalikapur’ model. Nutrient contribution from the produced vegetables through homestead vegetable production fulfilled the 100% Recommended Dietary Allowance (RDA) requirements of vitamin A, vitamin C, and iron, also 87% of calcium and 47% of protein. Four vegetable crops i.e. red amaranth, cabbage, tomato and batishak were introduced into the existing cropping pattern. Changes in social and livelihood issues of a respondent were satisfactory after demonstration. Majority of the respondents (45%) earned satisfactory annual income having homestead. Shortage of irrigation water, quality seeds and inputs cost were the major problems faced by the farmers in homestead vegetable production.
Correlations between X-ray and radio spectral properties of accreting black holes
Creators: name: Zdziarski, Andrzej A.
name: Lubinski, Piotr
name: Gilfanov, Marat
name: Revnivtsev, Mike
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We study correlations betwen X-ray spectral index, strength of Compton reflection, and X-ray and radio fluxes in accreting black holes (Seyferts and black-hole binaries). We critically evaluate the evidence for the correlation of the X-ray spectral index with the strength of Compton reflection and consider in detail statistical and systematic effects that can affect it. We study patterns of spectral variability (in particular, pivoting of a power law spectrum) corresponding to the X-ray index-flux correlation. We also consider implications of the form of observed X-ray spectra and their variability for interpretation of the correlation between the radio and X-ray fluxes. Finally, we discuss accretion geometries that can account for the correlations and their overall theoretical interpretations.
description: MNRAS, in press, 19 pages, needs to be printed in color
Eiphosoma dolopon Gauld 2000
Creators: name: González-Moreno, Alejandra
name: Bordera, Santiago
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Ichneumonidae
Eiphosoma
Eiphosoma dolopon

description: Eiphosoma dolopon Gauld 2000
 Distribution. Neotropical (Belize, Costa Rica).
 Habitat. Coastal dune scrubland, savannah, dry forest.
 Phenology. July, August.
 Studied material. MEXICO. Yucatán State, Ria Lagartos Biosphere Reserve, Cuyo Station, Punta Meco: 08– 22.VII.2009, 1 ♂; 27.VII–06.VIII.2009, 1 ♂ (CCBA). Sacbo: 08–22.VII.2009, 1 ♂; 27.VII–06.VIII.2009, 1 ♂ (CEUA).
description: Published as part of González-Moreno, Alejandra & Bordera, Santiago, 2011, New records of Ichneumonidae (Hymenoptera: Ichneumonoidea) from Mexico, pp. 1-21 in Zootaxa 2879 (1) on page 6, DOI: 10.11646/zootaxa.2879.1.1, http://zenodo.org/record/5285972
Effects of organic manures and chemical fertilizers on the yield of brinjal and soil properties
Creators: name: Ullah, M.S
name: Islam, M.S
name: Islam, M.A
name: Haque, T.
name: Ullah, M.S
name: Islam, M.S
name: Islam, M.A
name: Haque, T.
Publisher: name: Unknown
Year: 2008
Subjects: Agricultural and Food Policy
Crop Production/Industries

description: A field experiment was conducted at the Horticultural Farm of Bangladesh Agricultural University (BAU), Mymensingh during the period from December 2004 to April 2005 to evaluate the effect of manures and fertilizers on the yield of brinjal. There were five treatments consisting of organic, inorganic and combined sources of nutrients, of which the combined treatment (60 % organic +40% inorganic) showed the best performances. The maximum branching (20.1) with the highest number fruits/plant (15.2), fruit length (14.1 cm) and fruit diameter (4.3 cm) were found combined application of manures and fertilizers. The highest yield (45.5 t ha-1) was also obtained from the combined application of organic and inorganic sources of nutrients. Application of mustard oil cake or poultry manure alone gave better performance compared to only chemical fertilizers. The organic matter content and availability of N, P, K and S in soil were increased by organic matter application. On the other hand soil pH was increased with chemical application than organic.
Breakup Dynamics of Capillary Bridges on Hydrophobic Stripes
Creators: name: Hartmann, Maximilian
name: Fricke, Mathis
name: Weimar, Lukas
name: Gründing, Dirk
name: Marić, Tomislav
name: Bothe, Dieter
name: Hardt, Steffen
Publisher: name: arXiv
Year: 2019
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: The breakup dynamics of a capillary bridge on a hydrophobic stripe between two hydrophilic stripes is studied experimentally and numerically using direct numerical simulations. The capillary bridge is formed from an evaporating water droplet wetting three neighboring stripes of a chemically patterned surface. By considering the breakup process in a phase space representation, the breakup dynamics can be evaluated without the uncertainty in determining the precise breakup time. The simulations are based on the Volume-of-Fluid (VOF) method implemented in Free Surface 3D (FS3D). In order to construct physically realistic initial data for the VOF simulation, Surface Evolver is employed to calculate an initial configuration consistent with experiments. Numerical instabilities at the contact line are reduced by a novel discretization of the Navier-slip boundary condition on staggered grids. The breakup of the capillary bridge cannot be characterized by a unique scaling relationship. Instead, at different stages of the breakup process different scaling exponents apply, and the structure of the bridge undergoes a qualitative change. In the final stage of breakup, the capillary bridge forms a liquid thread that breaks up consistently with the Rayleigh-Plateau instability.
description: accepted manuscript, 28 pages, 19 figures
Effects of arsenic and its interaction with phosphorus on yield and arsenic accumulation in rice
Creators: name: Begum, M.
name: Akter, J.
name: Jahiruddin, M.R
name: Islam, M.R
name: Begum, M.
name: Akter, J.
name: Jahiruddin, M.R
name: Islam, M.R
Publisher: name: Unknown
Year: 2008
Subjects: Agricultural and Food Policy
Environmental Economics and Policy

description: A study was made on the effect of arsenic (As) and As X P interaction in Boro rice and its residual effect in succeeding T. Aman rice. Arsenic was added to soil (having 2.6 ppm initial As) @ 0, 15 and 30 mg As kg -1 from Na2HAsO4.7H2O and phosphorus @ 0, 20, 40, 60 and 80 mg P kg-1 from KH2PO4. Each pot had received 100 ppm N, 40 ppm K and 25 ppm S from urea, MoP and gypsum, respectively. The grain yield of Boro rice was reduced by 20.6 % for 15 ppm As treatment and 63.8 % due to 30 ppm As. Such reductions for straw yield were 21.0 and 65.2 % with these two As treatments, respectively. Residual effect of arsenic was also significant and negative in T. Aman rice. The grain-As concentration in all cases was below 1 ppm, and the straw-As content was well above 1 ppm. The arsenic concentrations of both grain and straw were lower in T. Aman rice than in Boro rice. The adverse effect of arsenic was further enhanced by P addition. This reaction has an implication to P fertilizer management in rice.
Eiphosoma gollum Gauld 2000
Creators: name: González-Moreno, Alejandra
name: Bordera, Santiago
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Ichneumonidae
Eiphosoma
Eiphosoma gollum

description: Eiphosoma gollum Gauld 2000
 Distribution. Neotropical (Costa Rica).
 Habitat. Coastal dune scrubland, savannah, dry forest.
 Phenology. January, July, November.
 Studied material. MEXICO. Yucatán State, Ria Lagartos Biosphere Reserve, Ría Lagartos Station, Post 024: 22.VII–27.VII.2009, 1 ♀. Core II: 10–26.XI.2008, 1 ♀ (CCBA). Estación Cuyo, Punta Meco: 07–21.I.2009, 1 ♀ (CEUA).
description: Published as part of González-Moreno, Alejandra & Bordera, Santiago, 2011, New records of Ichneumonidae (Hymenoptera: Ichneumonoidea) from Mexico, pp. 1-21 in Zootaxa 2879 (1) on page 6, DOI: 10.11646/zootaxa.2879.1.1, http://zenodo.org/record/5285972
A Ramsey variant of the Brown-Erdős-Sós conjecture
Creators: name: Shapira, Asaf
name: Tyomkyn, Mykhaylo
Publisher: name: arXiv
Year: 2019
Subjects: subject: Combinatorics (math.CO)
subject: FOS: Mathematics

description: An $r$-uniform hypergraph ($r$-graph for short) is called linear if every pair of vertices belong to at most one edge. A linear $r$-graph is complete if every pair of vertices are in exactly one edge. The famous Brown-Erdős-Sós conjecture states that for every fixed $k$ and $r$, every linear $r$-graph with $Ω(n^2)$ edges contains $k$ edges spanned by at most $(r-2)k+3$ vertices. As an intermediate step towards this conjecture, Conlon and Nenadov recently suggested to prove its natural Ramsey relaxation. Namely, that for every fixed $k$, $r$ and $c$, in every $c$-colouring of a complete linear $r$-graph, one can find $k$ monochromatic edges spanned by at most $(r-2)k+3$ vertices. We prove that this Ramsey version of the conjecture holds under the additional assumption that $r \geq r_0(c)$, and we show that for $c=2$ it holds for all $r\geq 4$.
Eiphosoma henorum Gauld 2000
Creators: name: González-Moreno, Alejandra
name: Bordera, Santiago
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Ichneumonidae
Eiphosoma
Eiphosoma henorum

description: Eiphosoma henorum Gauld 2000
 Distribution. Neotropical (Costa Rica).
 Habitat. Coastal dune scrubland, savannah.
 Phenology. April, July.
 Studied material. MEXICO. Yucatán State, Ria Lagartos Biosphere Reserve, Ría Lagartos Station, Post 024: 14–28.VII.2008, 2 ♂♂; 24. VI –08.VII.2009, 1 ♀. Core II: 14–28.VII.2008, 1 ♂ (CCBA). Cuyo Station, Cemetery: 08–22.VII.2009, 1 ♂. Sacbo: 01–14.VII.2008, 1 ♀. Tekal: 15–29.IV.2009, 1 ♀ (CEUA).
description: Published as part of González-Moreno, Alejandra & Bordera, Santiago, 2011, New records of Ichneumonidae (Hymenoptera: Ichneumonoidea) from Mexico, pp. 1-21 in Zootaxa 2879 (1) on page 6, DOI: 10.11646/zootaxa.2879.1.1, http://zenodo.org/record/5285972
Division Algebras and Extended N=2,4,8 SuperKdVs
Creators: name: Carrion, H. L.
name: Rojas, M.
name: Toppan, F.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The first example of an N=8 supersymmetric extension of the KdV equation is here explicitly constructed. It involves 8 bosonic and 8 fermionic fields. It corresponds to the unique N=8 solution based on a generalized hamiltonian dynamics with (generalized) Poisson brackets given by the Non-associative N=8 Superconformal Algebra. The complete list of inequivalent classes of parametric-dependent N=3 and N=4 superKdVs obtained from the ``Non-associative N=8 SCA" is also furnished. Furthermore, a fundamental domain characterizing the class of inequivalent N=4 superKdVs based on the "minimal N=4 SCA" is given.
description: 14 pages, LaTex
An Improvement Over Threads Communications on Multi-Core Processors
Creators: name: Fotohi, Reza
name: Effatparvar, Mehdi
name: Sarkohaki, Fateme
name: Behzad, Shahram
name: balov, Jaber Hoseini
Publisher: name: arXiv
Year: 2019
Subjects: subject: Operating Systems (cs.OS)
subject: FOS: Computer and information sciences

description: Multicore is an integrated circuit chip that uses two or more computational engines (cores) places in a single processor. This new approach is used to split the computational work of a threaded application and spread it over multiple execution cores, so that the computer system can benefits from a better performance and better responsiveness of the system. A thread is a unit of execution inside a process that is created and maintained to execute a set of actions/ instructions. Threads can be implemented differently from an operating system to another, but the operating system is in most cases responsible to schedule the execution of different threads. Multi-threading improving efficiency of processor performance with a cost-effective memory system. In this paper, we explore one approach to improve communications for multithreaded. Pre-send is a software Controlled data forwarding technique that sends data to destination's cache before it is needed, eliminating cache misses in the destination's cache as well as reducing the coherence traffic on the bus. we show how we could improve the overall system performance by addition of these architecture optimizations to multi-core processors.
description: This submission has been withdrawn by arXiv administrators due to inappropriate text reuse from external sources
Tilt Texture Domains on a Membrane and Chirality induced Budding
Creators: name: Sarasij, R. C
name: Rao, Madan
Publisher: name: arXiv
Year: 2001
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Quantitative Biology (q-bio)
subject: FOS: Physical sciences
subject: FOS: Biological sciences

description: We study the equilibrium conformations of a lipid domain on a planar fluid membrane where the domain is decorated by a vector field representing the tilt of the stiff fatty acid chains of the lipid molecules, while the surrounding membrane is fluid and structureless. The inclusion of chirality in the bulk of the domain induces a novel budding of the membrane, which preempts the budding induced by a decrease in interfacial tension.
description: 5 pages, 3 figures
A Joint Model for IT Operation Series Prediction and Anomaly Detection
Creators: name: Chen, Run-Qing
name: Shi, Guang-Hui
name: Zhao, Wan-Lei
name: Liang, Chang-Hui
Publisher: name: arXiv
Year: 2019
Subjects: subject: Machine Learning (cs.LG)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: Status prediction and anomaly detection are two fundamental tasks in automatic IT systems monitoring. In this paper, a joint model Predictor & Anomaly Detector (PAD) is proposed to address these two issues under one framework. In our design, the variational auto-encoder (VAE) and long short-term memory (LSTM) are joined together. The prediction block (LSTM) takes clean input from the reconstructed time series by VAE, which makes it robust to the anomalies and noise for prediction task. In the meantime, the LSTM block maintains the long-term sequential patterns, which are out of the sight of a VAE encoding window. This leads to the better performance of VAE in anomaly detection than it is trained alone. In the whole processing pipeline, the spectral residual analysis is integrated with VAE and LSTM to boost the performance of both. The superior performance on two tasks is confirmed with the experiments on two challenging evaluation benchmarks.
description: This paper has been published in Neurocomputing
The G Protein Biased Small Molecule Apelin Agonist CMF-019 is Disease Modifying in Endothelial Cell Apoptosis In Vitro and Induces Vasodilatation Without Desensitisation In Vivo
Creators: name: Read, Cai
name: Nyimanu, Duuamene
name: Yang, Peiran
name: Kuc, Rhoda E.
name: Williams, Thomas L.
name: Fitzpatrick, Christopher M.
name: Foster, Richard
name: Glen, Robert C.
name: Maguire, Janet J.
name: Davenport, Anthony P.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Pharmacology
apelin
bias
cardiovascular
in vivo
apoptosis
pulmonary artery endothelial cell
G protein coupled receptor

description: Signaling through the apelin receptor is beneficial for a number of diseases including pulmonary arterial hypertension. The endogenous small peptides, apelin and elabela/toddler, are downregulated in pulmonary arterial hypertension but are not suitable for exogenous administration owing to a lack of bioavailability, proteolytic instability and susceptibility to renal clearance. CMF-019, a small molecule apelin agonist that displays strong bias towards G protein signaling over β-arrestin (∼400 fold), may be more suitable. This study demonstrates that in addition to being a positive inotrope, CMF-019 caused dose-dependent vasodilatation in vivo (50 nmol 4.16 ± 1.18 mmHg, **p < 0.01; 500 nmol 6.62 ± 1.85 mmHg, **p < 0.01), without receptor desensitization. Furthermore, CMF-019 rescues human pulmonary artery endothelial cells from apoptosis induced by tumor necrosis factor α and cycloheximide (5.66 ± 0.97%, **p < 0.01) by approximately 50% of that observable with rhVEGF (11.59 ± 1.85%, **p < 0.01), suggesting it has disease-modifying potential in vitro. CMF-019 displays remarkable bias at the apelin receptor for a small molecule and importantly recapitulates all aspects of the cardiovascular responses to the endogenous ligand, [Pyr1]apelin-13, in vivo. Additionally, it is able to protect human pulmonary artery endothelial cells from apoptosis, suggesting that the beneficial effects observed with apelin agonists extend beyond hemodynamic alleviation and address disease etiology itself. These findings support CMF-019 as a G protein biased small molecule apelin agonist in vitro and in vivo that could form the basis for the design of novel therapeutic agents in chronic diseases, such as, pulmonary arterial hypertension.
Eiphosoma saranum Gauld 2000
Creators: name: González-Moreno, Alejandra
name: Bordera, Santiago
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Ichneumonidae
Eiphosoma
Eiphosoma saranum

description: Eiphosoma saranum Gauld 2000
 Distribution. Neotropical (Costa Rica).
 Habitat. Savannah.
 Phenology. December.
 Studied material. MEXICO. Yucatán State, Ria Lagartos Biosphere Reserve, Ría Lagartos Station, Post 024: 10–23.XII.2008, 1 ♂ (CCBA).
description: Published as part of González-Moreno, Alejandra & Bordera, Santiago, 2011, New records of Ichneumonidae (Hymenoptera: Ichneumonoidea) from Mexico, pp. 1-21 in Zootaxa 2879 (1) on page 7, DOI: 10.11646/zootaxa.2879.1.1, http://zenodo.org/record/5285972
d+is vs d+id' Time Reversal Symmetry Breaking States in Finite Size Systems
Creators: name: Amin, M. H. S.
name: Rashkeev, S. N.
name: Coury, M.
name: Omelyanchouk, A. N.
name: Zagoskin, A. M.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We report self-consistent quasiclassical calculations of spontaneous currents and magnetic moments in finite size unconventional superconducting systems, namely: (i) in isolated d-wave superconductor islands where, in addition to the dominant order parameter (with a d_{x^2-y^2} symmetry), a subdominant order parameter of s or d_{xy} symmetry is added; (ii) in grain boundary junctions between two arbitrarily oriented d-wave superconductors, and between a d-wave and an s-wave superconductor. We show that the profile of the spontaneous current density and the magnetic field distribution depend on the time-reversal symmetry breaking properties of the system. For the d_{x^2-y^2}+id_{xy} state, vortices appear near the edges of the finite size systems. We associate these vortices with the chiral nature of the mixed order parameter. The method developed here is quite general, and can be used for predicting properties of any finite size superconducting system.
description: 5 pages, 4 figures
MOESM5 of Canadian in-hospital mortality for patients with emergency-sensitive conditions: a retrospective cohort study
Creators: name: Berthelot, Simon
name: Lang, Eddy
name: Hude Quan
name: Stelfox, Henry
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 5. Caterpillar plots of ED-HSMRs by peer-group
BaBar B Decay Results
Creators: name: Nash, Jordan
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: Data from the first run of the BaBar detector at the PEP II accelerator are presented. Measurements of many rare B decay modes are now possible using the large data sets currently being collected by BaBar. An overview of analysis techniques and results on data collected in 2000 are described.
description: 16 pages, 35 figures. Submission to Lepton-Photon 2001 Rome conference proceedings
In silico identification of novel open reading frames in Plasmodium falciparum oocyte and salivary gland sporozoites using proteogenomics framework
Creators: name: Gunnarsson, Sophie
name: Prabakaran, Sudhakaran
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Research

description: Abstract: Background: Plasmodium falciparum causes the deadliest form of malaria, which remains one of the most prevalent infectious diseases. Unfortunately, the only licensed vaccine showed limited protection and resistance to anti-malarial drug is increasing, which can be largely attributed to the biological complexity of the parasite’s life cycle. The progression from one developmental stage to another in P. falciparum involves drastic changes in gene expressions, where its infectivity to human hosts varies greatly depending on the stage. Approaches to identify candidate genes that are responsible for the development of infectivity to human hosts typically involve differential gene expression analysis between stages. However, the detection may be limited to annotated proteins and open reading frames (ORFs) predicted using restrictive criteria. Methods: The above problem is particularly relevant for P. falciparum; whose genome annotation is relatively incomplete given its clinical significance. In this work, systems proteogenomics approach was used to address this challenge, as it allows computational detection of unannotated, novel Open Reading Frames (nORFs), which are neglected by conventional analyses. Two pairs of transcriptome/proteome were obtained from a previous study where one was collected in the mosquito-infectious oocyst sporozoite stage, and the other in the salivary gland sporozoite stage with human infectivity. They were then re-analysed using the proteogenomics framework to identify nORFs in each stage. Results: Translational products of nORFs that map to antisense, intergenic, intronic, 3′ UTR and 5′ UTR regions, as well as alternative reading frames of canonical proteins were detected. Some of these nORFs also showed differential expression between the two life cycle stages studied. Their regulatory roles were explored through further bioinformatics analyses including the expression regulation on the parent reference genes, in silico structure prediction, and gene ontology term enrichment analysis. Conclusion: The identification of nORFs in P. falciparum sporozoites highlights the biological complexity of the parasite. Although the analyses are solely computational, these results provide a starting point for further experimental validation of the existence and functional roles of these nORFs,
Symplectic Field Theory of the Galilean Covariant Scalar and Spinor Representations
Creators: name: Petronilo, Gustavo Xavier Antunes
name: Ulhoa, Sergio Costa
name: Santana, Ademir Eugenio
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: Exploring the concept of the extended Galilei group $\mathcal{G}$, a representation for the symplectic quantum mechanics in the manifold of $\mathcal{G}$, written in the light-cone of a five-dimensional De Sitter space-time, is derived consistently with the method of the Wigner function. A Hilbert space is constructed endowed with a simplectic structure, studying unitary operators describing rotations and translations, whose generators satisfy the Lie algebra of $\mathcal {G}$. This representation gives rise to the Schrödinger (Klein-Gordon-like) equation for the wave functions in phase-space, such that the dependent variables have the position and linear momentum contents. Wave functions are associated with the Wigner function through the Moyal product, such that the wave functions represent a quasi-amplitude of probability. We construct the Pauli-Schrödinger (Dirac-like) equation in phase-space in its explicitly covariant form. Finally, we show the equivalence between the five dimensional formalism of phase-space with the usual formalism, proposing a solution that recover the non-covariant form of the Pauli-Schrödinger equation in phase-space.
description: 6 pages, 2 figures, presented in New Trends in High Energy Physics, 2019, Odessa, Ukraine
MolSSI Formatting Guidelines for Machine Learning Products
Creators: name: Mostafanejad, Mohammad
name: Saxe, Paul
Publisher: name: Zenodo
Year: 2021
Subjects: machine learning
formatting guidelines
MolSSI best practices
MolSSI guidelines

description: This document is a part of MolSSI guidelines and best practices which focuses on formatting machine learning products (e.g., datasets, modules, models, etc.) before submitting them on the Zenodo platform and tagging them to one or more curated MolSSI community collections.
description: This work has been funded by the NSF OAC-1547580 and CHE-2136142 grants.
Characterising the spatial distribution of opportunities and constraints for land sparing in Brazil
Creators: name: Dos Santos, Juliana Silveira
name: Feltran-Barbieri, Rafael
name: Fonte, Ellen S.
name: Balmford, Andrew
name: Maioli, Veronica
name: Latawiec, Agnieszka
name: Strassburg, Bernardo B. N.
name: Phalan, Benjamin T.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article
/704/158/670
/704/172/4081
/9
article

description: Abstract: Brazil is a megadiversity country with more tropical forest than any other, and is a leading agricultural producer. The technical potential to reconcile these roles by concentrating agriculture on existing farmland and sparing land for nature is well-established, but the spatial overlap of this potential with conservation priorities and institutional constraints remains poorly understood. We mapped conservation priorities, food production potential and socio-economic variables likely to influence the success of land sparing. Pasture occupies 70% of agricultural land but contributes ≤11% of the domestic food supply. Increasing yields on pasture would add little to Brazil’s food supply but – if combined with concerted conservation and restoration policies – provides the greatest opportunities for reducing land demand. Our study illustrates a method for identifying municipalities where land-sparing policies are most likely to succeed, and those where further effort is needed to overcome constraints such as land tenure insecurity, lack of access to technical advice, labour constraints, and non-compliance with environmental law.
MOESM4 of RNA 3D structure prediction guided by independent folding of homologous sequences
Creators: name: Magnus, Marcin
name: Kalli Kappel
name: Rhiju Das
name: Bujnicki, Janusz
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 4: List of all the sequences and secondary structures used in the benchmark of EvoClustRNA and a list of links to the SimRNAweb predictions.
Lipid Traffic Analysis reveals the impact of high paternal carbohydrate intake on offsprings’ lipid metabolism
Creators: name: Furse, Samuel
name: Watkins, Adam J.
name: Hojat, Nima
name: Smith, James
name: Williams, Huw E. L.
name: Chiarugi, Davide
name: Koulman, Albert
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Article
/631/114/2398
/631/92/608
/631/136/2435
/101/58
article

description: Abstract: In this paper we present an investigation of parental-diet-driven metabolic programming in offspring using a novel computational network analysis tool. The impact of high paternal carbohydrate intake on offsprings’ phospholipid and triglyceride metabolism in F1 and F2 generations is described. Detailed lipid profiles were acquired from F1 neonate (3 weeks), F1 adult (16 weeks) and F2 neonate offspring in serum, liver, brain, heart and abdominal adipose tissues by MS and NMR. Using a purpose-built computational tool for analysing both phospholipid and fat metabolism as a network, we characterised the number, type and abundance of lipid variables in and between tissues (Lipid Traffic Analysis), finding a variety of reprogrammings associated with paternal diet. These results are important because they describe the long-term metabolic result of dietary intake by fathers. This analytical approach is important because it offers unparalleled insight into possible mechanisms for alterations in lipid metabolism throughout organisms.
Density Functional Modeling and Total Scattering Analysis of the Atomic Structure of a Quaternary CaO-MgO-Al2O3-SiO2 (CMAS) Glass: Uncovering the Local Environment of Magnesium
Creators: name: Gong, Kai
name: Özçelik, V. Ongun
name: Yang, Kengran
name: White, Claire E.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Quaternary CaO-MgO-Al2O3-SiO2 glasses are important constituents of the Earth's lower crust and mantle, and they also have important industrial applications such as in metallurgical processes, concrete production and emerging low-CO2 cement technologies. In particular, these applications rely heavily on the composition-structure-reactivity relationships for CMAS glasses, which are not yet well established. In this study, we developed a robust method that combines force-field molecular dynamics (MD) simulations and density functional theory (DFT) calculations with X-ray/neutron scattering experiments to resolve the atomic structure of a CMAS glass. The final structural representation generated using this method is not only thermodynamically favorable (according to DFT calculations) but also agrees with experiments (including X-ray/neutron scattering data as well as literature data). Detailed analysis of the final structure (including partial pair distribution functions, coordination number, oxygen environment) enabled existing discrepancies in the literature to be reconciled and has revealed new structural information on the CMAS glass, specifically, (i) the unambiguous assignment of medium-range atomic ordering, (ii) the preferential role of Ca atoms as charge compensators and Mg atoms as network modifiers, (iii) the proximity of Mg atoms to free oxygen sites, and (iv) clustering of Mg atoms. Overall, this new structural information will enhance our mechanistic understanding on CMAS glass dissolution behavior, including dissolution-related mechanisms occurring during the formation of low-CO2 cements.
Pristomerus anxius Gauld 2000
Creators: name: González-Moreno, Alejandra
name: Bordera, Santiago
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Ichneumonidae
Pristomerus
Pristomerus anxius

description: Pristomerus anxius Gauld 2000
 Distribution. Neotropical (Costa Rica).
 Habitat. Savannah, dry forest.
 Phenology. August, October, November.
 Studied material. MEXICO. Yucatán State, Ria Lagartos Biosphere Reserve, Ría lagartos Station, Core II: 28.VII–12.VIII.2008, 1 ♀; 08–22.X.2008, 1 ♂ (CCBA). Cuyo Station, Sacbo: 10–26.XI.2008, 1 ♀ (CEUA).
description: Published as part of González-Moreno, Alejandra & Bordera, Santiago, 2011, New records of Ichneumonidae (Hymenoptera: Ichneumonoidea) from Mexico, pp. 1-21 in Zootaxa 2879 (1) on page 7, DOI: 10.11646/zootaxa.2879.1.1, http://zenodo.org/record/5285972
Three essays on stopping
Creators: name: Mayerhofer, Eberhard
Publisher: name: arXiv
Year: 2019
Subjects: subject: Probability (math.PR)
subject: FOS: Mathematics
subject: 60J65, 60J75

description: First, we give a closed-form formula for first passage time of a reflected Brownian motion with drift. This modifies a formula by Perry et al (2004). Second, we show that the maximum before a fixed drawdown is exponentially distributed for any drawdown threshold, if and only if the diffusion characteristic mu/sigma^2 is constant. This complements the sufficient condition formulated by Lehoczky (1977). Third, we give an alternative proof for the fact that the maximum at a fixed drawdown threshold is exponentially distributed for any spectrally negative Lévy process, a result due to Mijatovic and Pistorius (2012).
description: 3 essays, 9 pages; bug corrected: the martingale in essay 1 had a different starting value
Niacin-mediated rejuvenation of macrophage/microglia enhances remyelination of the aging central nervous system
Creators: name: Rawji, Khalil S.
name: Young, Adam M.H.
name: Ghosh, Tanay
name: Michaels, Nathan J.
name: Mirzaei, Reza
name: Kappen, Janson
name: Kolehmainen, Kathleen L.
name: Alaeiilkhchi, Nima
name: Lozinski, Brian
name: Mishra, Manoj K.
name: Pu, Annie
name: Tang, Weiwen
name: Zein, Salma
name: Kaushik, Deepak K.
name: Keough, Michael B.
name: Plemel, Jason R.
name: Calvert, Fiona
name: Knights, Andrew J.
name: Gaffney, Daniel J.
name: Tetzlaff, Wolfram
name: Franklin, Robin J. M.
name: Yong, V. Wee
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Original Paper
Remyelination
Microglia
Macrophages
Aging
Oligodendrocyte progenitor cells
Phagocytosis

description: Abstract: Remyelination following CNS demyelination restores rapid signal propagation and protects axons; however, its efficiency declines with increasing age. Both intrinsic changes in the oligodendrocyte progenitor cell population and extrinsic factors in the lesion microenvironment of older subjects contribute to this decline. Microglia and monocyte-derived macrophages are critical for successful remyelination, releasing growth factors and clearing inhibitory myelin debris. Several studies have implicated delayed recruitment of macrophages/microglia into lesions as a key contributor to the decline in remyelination observed in older subjects. Here we show that the decreased expression of the scavenger receptor CD36 of aging mouse microglia and human microglia in culture underlies their reduced phagocytic activity. Overexpression of CD36 in cultured microglia rescues the deficit in phagocytosis of myelin debris. By screening for clinically approved agents that stimulate macrophages/microglia, we have found that niacin (vitamin B3) upregulates CD36 expression and enhances myelin phagocytosis by microglia in culture. This increase in myelin phagocytosis is mediated through the niacin receptor (hydroxycarboxylic acid receptor 2). Genetic fate mapping and multiphoton live imaging show that systemic treatment of 9–12-month-old demyelinated mice with therapeutically relevant doses of niacin promotes myelin debris clearance in lesions by both peripherally derived macrophages and microglia. This is accompanied by enhancement of oligodendrocyte progenitor cell numbers and by improved remyelination in the treated mice. Niacin represents a safe and translationally amenable regenerative therapy for chronic demyelinating diseases such as multiple sclerosis.
Euxesta wettsteini Hendel 1909
Creators: name: Korneyev, Severyn V.
name: Hauser, Martin
name: Kameneva, Elena P.
name: Gaimari, Stephen D.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Ulidiidae
Euxesta
Euxesta wettsteini

description: Euxesta wettsteini Hendel, 1909
Fig. 1c
Euxesta wettsteini Hendel, 1909:154 (key), 165 (description), 1910:28 (catalog); Curran, 1935:12 (key); Steyskal, 1968:54. 20 (catalog); Kameneva, 2004:619 (material).
Type Specimens. Syntypes 3 ♀, BRAZIL: São Paulo, labeled: “Iguape/Young”; “Bras. Exped. / Wettstein. [18]91”; “wettsteini H. / det. F. Hendel \ Euxesta ”; “Type” [thick red paper]; “Syntype Euxesta wettsteini Hendel 1909 des. Korneyev & Kameneva 2001” (NHMW). Syntype 1 ♂, same labels as above (HMNH), not examined.
Additional Specimens Examined. 1 ♀, COSTA RICA: Prov. Guanacaste: A. C. T., Est. Lomas Barbudal, 30 m, VII.1991, Acevedo (INBC); 1 ♀, 2 km E Hacienda Palo Verde, VII.1973, Keeler (USNM); 1 ♀, Prov. Puntarenas: Coto [Brus], finca 47, 25.VII.1957, Menke (LACM).
Remarks. As noted above, E. wettsteini differs from E. abdominalis only by the syntergite 1+2 entirely black (instead of dirty yellow in E. abdominalis). Three of the four females in a series from Costa Rica have entirely black abdomens as in E. wettsteini, and one female has yellowish base of abdomen as in the three males; all the specimens here identified as E. wettsteinii are also females that possibly shows their differences to be only a result of sexual dimorphism or individual variability (including geographical). We do not formally synonymize these two names, as additional studies of larger series including the genital characters are needed.
Distribution. Brazil, Paraguay, Trinidad, U.S.A. (Hawaii) (Steyskal 1969), Venezuela (Steyskal 1968).
description: Published as part of Korneyev, Severyn V., Hauser, Martin, Kameneva, Elena P. & Gaimari, Stephen D., 2022, A key to species of the Euxesta sororcula species group (Diptera: Ulidiidae: Lipsanini), with new synonymy and a new record from the U. S. A., pp. 150-162 in The Pan-Pacific Entomologist 98 (2) on page 159, DOI: 10.3956/2022-98.2.150, http://zenodo.org/record/15237832
MOESM4 of Canadian in-hospital mortality for patients with emergency-sensitive conditions: a retrospective cohort study
Creators: name: Berthelot, Simon
name: Lang, Eddy
name: Hude Quan
name: Stelfox, Henry
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 4. Distribution of ED-HSMRs of all eligible institutions (n = 294) in 2010–11
On characteristic classes of exotic manifold bundles
Creators: name: Krannich, Manuel
Publisher: name: Apollo - University of Cambridge Repository
Year: 2019
Subjects: Article
55R40
57R60
57S05

description: Abstract: Given a closed simply connected manifold M of dimension 2n≥6, we compare the ring of characteristic classes of smooth oriented bundles with fibre M to the analogous ring resulting from replacing M by the connected sum M♯Σ with an exotic sphere Σ. We show that, after inverting the order of Σ in the group of homotopy spheres, the two rings in question are isomorphic in a range of degrees. Furthermore, we construct infinite families of examples witnessing that inverting the order of Σ is necessary.
Stable localized pulses and zigzag stripes in a two-dimensional diffractive-diffusive Ginzburg-Landau equation
Creators: name: Sakaguchi, H.
name: Malomed, B. A.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Pattern Formation and Solitons (nlin.PS)
subject: FOS: Physical sciences

description: We introduce a model of a two-dimensional (2D) optical waveguide with Kerr nonlinearity, linear and quintic losses, cubic gain, and temporal-domain filtering. In the general case, temporal dispersion is also included, although it is not necessary. The model provides for description of a nonlinear planar waveguide incorporated into a closed optical cavity. It takes the form of a 2D cubic-quintic Ginzburg-Landau equation with an anisotropy of a novel type: the equation is diffractive in one direction, and diffusive in the other. By means of systematic simulations, we demonstrate that the model gives rise to \emph{stable} fully localized 2D pulses, which are spatiotemporal ``light bullets'', existing due to the simultaneous balances between diffraction, dispersion, and Kerr nonlinearity, and between linear and quintic losses and cubic gain. A stability region of the 2D pulses is identified in the system's parameter space. Besides that, we also find that the model generates 1D patterns in the form of simple localized stripes, which may be stable, or may exhibit an instability transforming them into oblique stripes with zigzags. The straight and oblique stripes may stably coexist with the 2D pulse, but not with each other.
description: 16pages, 9figures
Pristomerus baumhoferi Cushman 1930
Creators: name: González-Moreno, Alejandra
name: Bordera, Santiago
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Ichneumonidae
Pristomerus
Pristomerus baumhoferi

description: Pristomerus baumhoferi Cushman 1930
 Distribution. Nearctic (Canada, United States).
 Habitat. Savannah, dry forest.
 Phenology. Appendix I (Fig. 9).
 Studied material. MEXICO. Yucatán State, Ria Lagartos Biosphere Reserve, Ría lagartos Station, Post 024: 14–28.VII.2008, 1 ♂. Core II: 24.IX–08.X.2008, 1 ♂; 08–22.X.2008, 2 ♂♂ (CCBA); 10–26.XI.2008, 9 ♂♂. Sacbo: 10–26.XI.2008, 1 ♂; 10–23.XII.2008, 1 ♂ (CEUA).
description: Published as part of González-Moreno, Alejandra & Bordera, Santiago, 2011, New records of Ichneumonidae (Hymenoptera: Ichneumonoidea) from Mexico, pp. 1-21 in Zootaxa 2879 (1) on page 7, DOI: 10.11646/zootaxa.2879.1.1, http://zenodo.org/record/5285972
Nonequilibrium oscillations, probability angular momentum, and the climate system
Creators: name: Weiss, Jeffrey B.
name: Fox-Kemper, Baylor
name: Mandal, Dibyendu
name: Nelson, Arin D.
name: Zia, R. K. P.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Atmospheric and Oceanic Physics (physics.ao-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Though the Boltzmann-Gibbs framework of equilibrium statistical mechanics has been successful in many arenas, it is clearly inadequate for describing many interesting natural phenomena driven far from equilibrium. The simplest step towards that goal is a better understanding of nonequilibrium steady-states (NESS). Here we focus on one of the distinctive features of NESS, persistent probability currents, and their manifestations in our climate system. We consider the natural variability of the steady-state climate system, which can be approximated as a NESS. These currents must form closed loops, which are odd under time reversal, providing the crucial difference between systems in thermal equilibrium and NESS. Seeking manifestations of such current loops leads us naturally to the notion of probability angular momentum and oscillations in the space of observables. Specifically, we will relate this concept to the asymmetric part of certain time-dependent correlation functions. Applying this approach, we propose that these current loops give rise to preferred spatio-temporal patterns of natural climate variability that take the form of climate oscillations such as the El-Niño Southern Oscillation (ENSO) and the Madden-Julien Oscillation (MJO). In the space of climate indices, we observe persistent currents and define a new diagnostic for these currents: the probability angular momentum. Using the observed climatic time series of ENSO and MJO, we compute both the averages and the distributions of the probability angular momentum. These results are in good agreement with the analysis from a linear Gaussian model. We propose that, in addition to being a new quantification of climate oscillations across models and observations, the probability angular momentum provides a meaningful characterization for all statistical systems in NESS.
description: Journal of Statistical Physics (2019)
MOESM3 of Canadian in-hospital mortality for patients with emergency-sensitive conditions: a retrospective cohort study
Creators: name: Berthelot, Simon
name: Lang, Eddy
name: Hude Quan
name: Stelfox, Henry
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 3. Charlson index score groups
Cryo-EM structural analysis of FADD:Caspase-8 complexes defines the catalytic dimer architecture for co-ordinated control of cell fate
Creators: name: Fox, Joanna L.
name: Hughes, Michelle A.
name: Meng, Xin
name: Sarnowska, Nikola A.
name: Powley, Ian R.
name: Jukes-Jones, Rebekah
name: Dinsdale, David
name: Ragan, Timothy J.
name: Fairall, Louise
name: Schwabe, John W. R.
name: Morone, Nobuhiro
name: Cain, Kelvin
name: MacFarlane, Marion
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Article
/631/45/468
/631/45/535
/631/80/82
/82/83
/82/58
/96/2
/96/31
/96/106
/13/2
/45
/101/28
/14/28
/14/63
article

description: Abstract: Regulated cell death is essential in development and cellular homeostasis. Multi-protein platforms, including the Death-Inducing Signaling Complex (DISC), co-ordinate cell fate via a core FADD:Caspase-8 complex and its regulatory partners, such as the cell death inhibitor c-FLIP. Here, using electron microscopy, we visualize full-length procaspase-8 in complex with FADD. Our structural analysis now reveals how the FADD-nucleated tandem death effector domain (tDED) helical filament is required to orientate the procaspase-8 catalytic domains, enabling their activation via anti-parallel dimerization. Strikingly, recruitment of c-FLIPS into this complex inhibits Caspase-8 activity by altering tDED triple helix architecture, resulting in steric hindrance of the canonical tDED Type I binding site. This prevents both Caspase-8 catalytic domain assembly and tDED helical filament elongation. Our findings reveal how the plasticity, composition and architecture of the core FADD:Caspase-8 complex critically defines life/death decisions not only via the DISC, but across multiple key signaling platforms including TNF complex II, the ripoptosome, and RIPK1/RIPK3 necrosome.
Abstract for the paper "Tuning Porosity of Reduced Graphene Oxide Membrane Materials by Alkali Activation"
Creators: name: Shen, Yang
name: Maurizi, Luca
name: Magnacca, Giuliana
name: Boffa, Vittorio
name: Yuanzheng Yue
Publisher: name: Zenodo
Year: 2021
Subjects: Graphene, graphene oxide, reduced graphene oxide, graphene membranes, nanomaterials, water treatment

description: Abstract for the paper "Tuning Porosity of Reduced Graphene Oxide Membrane Materials by Alkali Activation". Presented during Graphenemeet 2021.