cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 6: of Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes
Creators: name: Alneberg, Johannes
name: Karlsson, Christofer
name: Anna-Maria Divne
name: Bergin, Claudia
name: Homa, Felix
name: Lindh, Markus
name: Hugerth, Luisa
name: Ettema, Thijs
name: Bertilsson, Stefan
name: Andersson, Anders
name: Jarone Pinhassi
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Figure S3. Tetranucleotide frequency plots of SAG BS0038H10 in BACL1. Nucleotide composition PCAs (a,b) and metagenome coverage estimate density plots (c,d) for contigs separated on alignment rate (
Pulsar Timing Constraints on the Fermi Massive Black-Hole Binary Blazar Population
Creators: name: Holgado, A. Miguel
name: Sesana, Alberto
name: Sandrinelli, Angela
name: Covino, Stefano
name: Treves, Aldo
name: Liu, Xin
name: Ricker, Paul
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Blazars are a sub-population of quasars whose jets are nearly aligned with the line-of-sight, which tend to exhibit multi-wavelength variability on a variety of timescales. Quasi-periodic variability on year-like timescales has been detected in a number of bright sources, and has been connected to the orbital motion of a putative massive black hole binary. If this were indeed the case, those blazar binaries would contribute to the nanohertz gravitational-wave stochastic background. We test the binary hypothesis for the blazar population observed by the \textit{Fermi} Gamma-Ray Space Telescope, which consists of BL Lacertae objects and flat-spectrum radio quasars. Using mock populations informed by the luminosity functions for BL Lacertae objects and flat-spectrum radio quasars with redshifts $z \le 2$, we calculate the expected gravitational wave background and compare it to recent pulsar timing array upper limits. The two are consistent only if a fraction $\lesssim 10^{-3}$ of blazars hosts a binary with orbital periods $<5$ years. We therefore conclude that binarity cannot significantly explain year-like quasi-periodicity in blazars.
description: 5 pages, 4 figures, accepted by MNRAS Letters
Oral history interview with Wendy Chavkin, 2002
Publisher: name: Columbia University
Year: 2019
Subjects: Obstetricians
Gynecologists
Abortion--United States
Abortion--Law and legislation--United States
Abortion--History--20th century.--United States
Physicians--Attitudes.--United States
Reproductive rights--United States

description: BA, University of Chicago; MD, University of Michigan, Ann Arbor (1978); Discussion on formation of pro-choice opinions, involvement in women's movement; Participation in, reminiscences of the Jane Collective; Response to the Roe v. Wade decision; Chairperson of PRCH [Physicians for Reproductive Choice and Health]: explanation of goals, motives, importance; Opinions of significance of Vision of Choice Project history of abortion movement to future doctors; Speculations on the future of Roe v. Wade
$B$ Meson Matrix Elements from Various Heavy Quark Effective Theories
Creators: name: Draper, Terrence
name: McNeile, Craig
Publisher: name: arXiv
Year: 1995
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: Various properties of heavy-light mesons are determined, including decay constants, the $B_{B}$-parameter, and the Isgur-Wise function. The heavy (bottom) quark is simulated with the static, NRQCD and/or (fixed-velocity) lattice-HQET effective theories, using optimally-smeared sources as produced by the ``Maximal Operator Smearing Technique''.
description: To appear in the proceedings of the Lattice '95 conference. 4 pages, uuencoded-compressed PostScript file
Formation of topological vortices during superfluid transition in a rotating vessel
Creators: name: Dave, Shreyansh S.
name: Srivastava, Ajit M.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Other Condensed Matter (cond-mat.other)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Formation of topological defects during symmetry breaking phase transitions via the {\it Kibble mechanism} is extensively used in systems ranging from condensed matter physics to the early stages of the universe. Kibble mechanism uses topological arguments and predicts equal probabilities for the formation of defects and anti-defects. Certain situations, however, require a net bias in the production of defects (or antidefects) during the transition, for example, superfluid transition in a rotating vessel, or flux tubes formation in a superconducting transition in the presence of external magnetic field. In this paper we present a modified Kibble mechanism for a specific system, $^4$He superfluid transition in a rotating vessel, which can produce the required bias of vortices over antivortices. Our results make distinctive predictions which can be tested in superfluid $^4$He experiments. These results also have important implications for superfluid phase transitions in rotating neutron stars and also for any superfluid phases of QCD arising in the non-central low energy heavy-ion collision experiment due to an overall rotation.
description: 8 pages, 3 figures, more explanations added
Lack of influence of social media on vaccine decision-making by university students in Ireland
Creators: name: Moore, Lyndsey E.
name: Vucen, Sonja
name: Moore, Anne C.
Publisher: name: Taylor & Francis
Year: 2023
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: Vaccine hesitancy is a complex, context-specific issue that negatively impacts vaccine uptake. During the COVID-19 pandemic, vaccine mis- and dis-information on social media negatively impacted on COVID-19 vaccine acceptance. University students’ beliefs and behaviors surrounding vaccine decision-making is less studied, but this population is important in disease transmission, vaccine uptake and effectiveness. Here, we surveyed students in a third-level Irish university, in September 2022, when pandemic restrictions had been removed, to primarily determine if their use of, and influence by, mainstream and social media correlated with their willingness to receive a COVID-19 vaccine or any vaccine. We analyzed 151 responses and found no significant correlation between students’ willingness to receive either a COVID-19 vaccine or any vaccine and their use of social media. There were significant links between vaccine acceptance and a range of factors, namely accommodation type, social media behaviors, perceived exposure to vaccine mis- or dis-information and previous vaccine uptake. This study provides a preliminary insight into drivers of university student COVID-19 and general vaccine willingness. It provides initial data, in the context of post-pandemic restrictions, to support further development of interventions to enhance vaccine uptake in third-level students in Ireland.
Determination of the Crumpling Fractal Dimension Via k-Space MCRG
Creators: name: Espriu, D.
name: Travesset, A.
Publisher: name: arXiv
Year: 1995
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: Motivated by the successful application of MCRG in momentum space to $λϕ^4_3$ we determine the critical exponents at the crumpling transition in fixed triangulated surfaces. The results are still tentative, but suggest that $-1.0\ge η\ge -1.3$, pointing at a value for the fractal Hausdorff dimension at the crumpling transistion fixed point somewhere between 3 and 4.
description: 4 pages of LATEX (uses espcrc2.sty) and 1 uuencoded ps figure. (Contribution to Lattice'95)
Field-free Magnetization Switching by Utilizing the Spin Hall Effect and Interlayer Exchange Coupling of Iridium
Creators: name: Liu, Yang
name: Zhou, Bing
name: Zhu, Jian-Gang
Publisher: name: arXiv
Year: 2018
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Magnetization switching by spin-orbit torque (SOT) via spin Hall effect represents as a competitive alternative to that by spin-transfer torque (STT) used for magnetoresistive random access memory (MRAM), as it does not require high-density current to go through the tunnel junction. For perpendicular MRAM, however, SOT driven switching of the free layer requires an external in-plane field, which poses limitation for viability in practical applications. Here we demonstrate field-free magnetization switching of a perpendicular magnet by utilizing an Iridium (Ir) layer. The Ir layer not only provides SOTs via spin Hall effect, but also induce interlayer exchange coupling with an in-plane magnetic layer that eliminates the need for the external field. Such dual functions of the Ir layer allows future build-up of magnetoresistive stacks for memory and logic applications. Experimental observations show that the SOT driven field-free magnetization reversal is characterized as domain nucleation and expansion. Micromagnetic modeling is carried out to provide in-depth understanding of the perpendicular magnetization reversal process in the presence of an in-plane exchange coupling field.
Additional file 3 of A comprehensive analysis of 195 DNA methylomes reveals shared and cell-specific features of partially methylated domains
Creators: name: Abdulrahman Salhab
name: NordstrĂśm, Karl
name: Gasparoni, Gilles
name: Kattler, Kathrin
name: Ebert, Peter
name: Ramirez, Fidel
name: Arrigoni, Laura
name: MĂźller, Fabian
name: Polansky, Julia
name: Cadenas, Cristina
name: G.Hengstler, Jan
name: Lengauer, Thomas
name: Manke, Thomas
name: JĂśrn Walter
Publisher: name: figshare
Year: 2018
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Developmental Biology

description: Review history. (DOCX 58 kb)
The Journey to FAIR: Tools to aid you in your open data adventure
Creators: name: Ferguson, Kim
Publisher: name: Zenodo
Year: 2024
Subjects: FAIR
research data management

description: Presentation given at NWO Life 2024, for the workshop titled "Save yourself! FAIR-ify your digital research in 45 minutes!" (see Related Works).

 

Note:

The slide deck is distributed the same across two file formats: .pptx and .pdf. The .pptx format is the most (web) accessible, while the .pdf serves as a stable visual version with accessible features. In case of format issues, the .pdf file would be considered the reference file - this reference file is denoted by "1-" at the beginning of the file name.
Additional file 3: of Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes
Creators: name: Alneberg, Johannes
name: Karlsson, Christofer
name: Anna-Maria Divne
name: Bergin, Claudia
name: Homa, Felix
name: Lindh, Markus
name: Hugerth, Luisa
name: Ettema, Thijs
name: Bertilsson, Stefan
name: Andersson, Anders
name: Jarone Pinhassi
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: Developmental Biology
subject: Marine Biology
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Figure S2. Abundances over the years 2011 and 2012 for OTUs matching clusters of SAGs and MAGs. Redrawn from references Hugerth et al. and Lindh et al. [23, 49]. (PDF 188 kb)
title: 03_1044
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
Oral history interview with West Indian John, 1981
Publisher: name: Columbia University
Year: 2020
Subjects: Drug addicts--United States
Drug dealers--United States
Drug traffic--History--20th century.--United States
Heroin abuse--History--20th century.--United States
Imprisonment--United States
Methadone maintenance--History--20th century.--United States
African American sailors--Social conditions--20th century
Jazz musicians

description: This interview begins with a discussion of West Indian John's birth in Trinidad, migration to the United States, childhood and family, and upbringing in Harlem. He describes his introduction to marijuana, barbiturates, heroin, and morphine as a teenager, including methods of use and needle maintenance, the sensations associated with different substances, and connections between jazz musicians and drug use. After covering his stint in the Navy, including his drug use and racial tensions, the interview touches on his return to New York City, renewed heroin addiction, and first arrests, including description of the declining quality of commercially available heroin since the 1930s and techniques for adulterating it. West Indian John details the range of illegal activities he used to earn money, ranging from theft to selling false jewelry to pimping to various cons and swindles, as well as the processes by which he acquired and sold heroin, including his work as a lieutenant for Nicky Barnes. After narrating stretches in prison, panics, and health problems, he describes his experiences using methadone, as well as his relationships with women, time spent in the Lexington, KY addiction recovery hospital program and other clinics, and his perceptions of contemporary drug culture
On the role of shock waves in galaxy cluster evolution
Creators: name: Quilis, Vicent
name: Ibanez, Jose Ma.
name: Saez, Diego
Publisher: name: arXiv
Year: 1998
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Numerical simulations of galaxy clusters including two species -- baryonic gas and dark matter particles --are presented. Cold Dark Matter spectrum, Gaussian statistics and flat universe are assumed. The dark matter component is evolved numerically by means of a standard particle mesh method. The evolution of the baryonic component has been studied numerically by using a multidimensional (3D) hydrodynamical code based on modern high resolution shock capturing techniques. These techniques are specially designed for treating accurately complex flows in which shocks appear and interact. With this picture, the role of shock waves in the formation and evolution of rich galaxy clusters is analyzed. Our results display two well differenced morphologies of the shocked baryonic matter: filamentary at early epochs and quasi-spherical at low redshifts.
description: 28 pages, LaTex with aasms4.sty, 12 postscript figures, tared,gziped and uuencoded. Accepted in ApJ
Hubbard Model with Luscher fermions - a progress report
Creators: name: Sawicki, P.
name: Wosiek, J.
Publisher: name: arXiv
Year: 1995
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: Some modifications of the Luscher algorithm, which reduce the autocorelation time, are proposed and tested.
description: 3 pages, uuencoded gzipped Postscript, contribution to Lattice 95
Gluing Bartnik extensions, continuity of the Bartnik mass, and the equivalence of definitions
Creators: name: McCormick, Stephen
Publisher: name: arXiv
Year: 2018
Subjects: subject: Differential Geometry (math.DG)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Mathematics
subject: FOS: Physical sciences

description: In the context of the Bartnik mass, there are two fundamentally different notions of an extension of some compact Riemannian manifold $(Ω,γ)$ with boundary. In one case, the extension is taken to be a manifold without boundary in which $(Ω,γ)$ embeds isometrically, and in the other case the extension is taken to be a manifold with boundary where the boundary data is determined by $\partial Ω$. We give a type of convexity condition under which we can say both of these types of extensions indeed yield the same value for the Bartnik mass. Under the same hypotheses we prove that the Bartnik mass varies continuously with respect to the boundary data. This also provides a method to use estimates for the Bartnik mass of constant mean curvature (CMC) Bartnik data, to obtain estimates for the Bartnik mass of non-CMC Bartnik data. The key idea for these results is a method for gluing Bartnik extensions of given Bartnik data to other nearby Bartnik data.
description: 22 pages. Comments welcome! V2: Added some discussion in regard to preservation of the non-degeneracy condition in the constructions used
Global Seismic Oscillations in Soft Gamma Repeaters
Creators: name: Duncan, Robert C.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: There is evidence that soft gamma repeaters (SGRs) are neutron stars which experience frequent starquakes, possibly driven by an evolving, ultra-strong magnetic field. The empirical power-law distribution of SGR burst energies, analogous to the Gutenberg-Richter law for earthquakes, exhibits a turn-over at high energies consistent with a global limit on the crust fracture size. With such large starquakes occurring, the significant excitation of global seismic oscillations (GSOs) seems likely. Moreover, GSOs may be self-exciting in a stellar crust that is strained by many, randomly-oriented stresses. We explain why low-order toroidal modes, which preserve the shape of the star and have observable frequencies as low as ~ 30 Hz, may be especially susceptible to excitation. We estimate the eigenfrequencies as a function of stellar mass and radius, and their magnetic and rotational shiftings/splittings. We also describes ways in which these modes might be detected and damped. There is marginal evidence for 23 ms oscillations in the hard initial pulse of the 1979 March 5th event. This could be due to the $_3t_0$ mode in a neutron star with B ~ 10^{14} G or less; or it could be the fundamental toroidal mode if the field in the deep crust of SGR 0526-66 is ~ 4 X 10^{15} G, in agreement with other evidence. If confirmed, GSOs would give corroborating evidence for crust-fracturing magnetic fields in SGRs: B >~ 10^{14} G.
description: 12 pages, AASTeX, no figures. Accepted for Astrophysical Journal Letters
title: ADCO, Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome IV, Cart. 188 (11 H 73), f. 0039v
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome IV, Archives départementales de la Côte-d'Or, Cart. 188 (11 H 73), f. 0039v, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome IV, Archives départementales de la Côte-d'Or, Cart. 188 (11 H 73), f. 0039v, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Additional file 2 of A comprehensive analysis of 195 DNA methylomes reveals shared and cell-specific features of partially methylated domains
Creators: name: Abdulrahman Salhab
name: NordstrĂśm, Karl
name: Gasparoni, Gilles
name: Kattler, Kathrin
name: Ebert, Peter
name: Ramirez, Fidel
name: Arrigoni, Laura
name: MĂźller, Fabian
name: Polansky, Julia
name: Cadenas, Cristina
name: G.Hengstler, Jan
name: Lengauer, Thomas
name: Manke, Thomas
name: JĂśrn Walter
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Cell Biology
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology

description: Supplementary materials. PDF document with supplementary figures and supplementary methods. (PDF 11,526 kb)
Oral history interview with Whitehead, 1981
Publisher: name: Columbia University
Year: 2020
Subjects: Drug addicts--United States
Drug dealers--United States
Imprisonment--United States
Drug traffic--History--20th century.--United States
Drug abuse--History--20th century.--United States

description: Whitehead discusses his experiences spanning over thirty years as a user of heroin and cocaine and a street hustler in New York City. The interview explores his lucrative career buying and selling drugs, running numbers, committing scams and thefts, and trading counterfeit money. He was based in Harlem and the Upper East Side. He describes his perceptions of the evolution of the New York drug trade, including the ethnic and racial groups that controlled it at different levels and the decline in quality of heroin available from the 1950s to the 1980s. The discussion explores in depth the manner and frequency of his drug use, times spent in methadone or detox programs, and his physical health, as well as the economics and daily life of drug use and sales. Other topics include: his over thirty arrests and several stretches in jail and prison; his activities as a jailhouse lawyer and plans to pursue education to become a paralegal; perceptions of other drugs; experiences of two brief drug panics; his two children and relationships with women; and the satisfactions as well as regrets from his life
Al$_x$Ga$_{1-x}$As crystals with direct 2 eV band gaps from computational alchemy
Creators: name: Chang, K. Y. Samuel
name: von Lilienfeld, O. Anatole
Publisher: name: arXiv
Year: 2018
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: We use alchemical first order derivatives for the rapid yet robust prediction of band structures. The power of the approach is demonstrated for the design challenge of finding Al$_x$Ga$_{1-x}$As semiconductor alloys with large direct band gap using computational alchemy within a genetic algorithm. Dozens of crystal polymorphs are identified for $x>\frac{2}{3}$ with direct band gaps larger than 2\:eV according to HSE approximated density functional theory. Based on a single generalized gradient approximated density functional theory band structure calculation of pure GaAs we observe convergence after visiting only $\sim$800 crystal candidates. The general applicability of alchemical gradients is demonstrated for band structure estimates in III-V and IV-IV crystals as well as for H$_2$ uptake in Sr and Ca-alanate crystals.
Additional file 3 of A comprehensive analysis of 195 DNA methylomes reveals shared and cell-specific features of partially methylated domains
Creators: name: Abdulrahman Salhab
name: NordstrĂśm, Karl
name: Gasparoni, Gilles
name: Kattler, Kathrin
name: Ebert, Peter
name: Ramirez, Fidel
name: Arrigoni, Laura
name: MĂźller, Fabian
name: Polansky, Julia K.
name: Cadenas, Cristina
name: G.Hengstler, Jan
name: Lengauer, Thomas
name: Manke, Thomas
name: JĂśrn Walter
Publisher: name: figshare
Year: 2018
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Developmental Biology

description: Review history. (DOCX 54 kb)
Improved cooling algorithm for gauge theories
Creators: name: de Forcrand, Philippe
name: Perez, Margarita Garcia
name: Stamatescu, Ion-Olimpiu
Publisher: name: arXiv
Year: 1995
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: We propose and study a ``gold-washing" - type of algorithm which smooths out the short range fluctuations but leaves invariant instantons above a certain size. The algorithm needs no monitoring or calibration.
description: Latex file, 4 pages, 4 figures in uuencoded compressed tar file. Contribution to Lattice 95
Lorentz-violating dimension-five operator contribution to the black body radiation
Creators: name: Anacleto, M. A.
name: Brito, F. A.
name: Maciel, E.
name: Mohammadi, A.
name: Passos, E.
name: Santos, W. O.
name: Santos, J. R. L.
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We investigate the thermodynamics of a photon gas in an effective field theory model that describes Lorentz violations through dimension-five operators and Horava-Lifshitz theory. We explore the electrodynamics of the model which includes higher order derivatives in the Lagrangian that can modify the dispersion relation for the propagation of the photons. We shall focus on the deformed black body radiation spectrum and modified Stefan-Boltzmann law to address the allowed bounds on the Lorentz-violating parameter.
description: 8 pages, 6 figures. Version published in PLB
Additional file 1 of Co-occurring hydrocephalus in autism spectrum disorder: a Danish population-based cohort study
Creators: name: Munch, Tina Nørgaard
name: Hedley, Paula Louise
name: Hagen, Christian Munch
name: Bækvad-Hansen, Marie
name: Bybjerg-Grauholm, Jonas
name: Grove, Jakob
name: Nordentoft, Merete
name: Børglum, Anders Dupont
name: Mortensen, Preben Bo
name: Werge, Thomas Mears
name: Melbye, Mads
name: Hougaard, David Michael
name: Christiansen, Michael
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Mental Health

description: Additional file 1: Figure S1. Permutation tests of association between hydrocephalus and autism spectrum disorder. Figure S2. Interval between first-time diagnosis of ASD and first-time diagnosis of hydrocephalus (HC) in all cases (n = 68) of ASD and HC and in all cases of childhood autism (n = 23) and HC. Table S1. Age at diagnosis and gender distribution of the hydrocephalus patients by psychiatric co-diagnosis.
Investigation into the entry and intracellular trafficking of a bacteriophage-derived gene therapy vector
Creators: name: Stoneham, Charlotte Anne
Publisher: name: Imperial College London
Year: 2013

description: Gene therapy is a promising approach for the treatment of cancer. While most progress in gene therapy has been achieved using eukaryotic viral vectors, they have had limited success in systemic gene therapy applications due to undesired uptake in non-targeted tissues, insertional mutagenesis, and immunogenicity. These shortcomings have driven the development of gene delivery vectors derived from alternative sources. The bacteriophage-derived Adeno-associated virus-phage (AAVP) is a novel hybrid prokaryotic-eukaryotic viral vector consisting of a mammalian transgene cassette flanked by ITRs from AAV serotype 2 inserted into an intergenomic region of an M13 bacteriophage. Anti-tumour therapy following systemic administration has previously been demonstrated in several in vivo cancer models, with tumour specificity achieved through display of an αv integrin-targeting ligand on the viral capsid. However, despite the apparent success of this novel vector in several cancer models, high titres of AAVP are required for transduction of mammalian cells. The mechanisms of entry and intracellular trafficking of the targeted AAVP vector were therefore investigated in order to identify key barriers to transduction. Using a combination of flow cytometry, confocal, and electron microscopy techniques, together with pharmacological agents, RNAi and dominant negative mutants, it was demonstrated that receptor-mediated endocytosis of the AAVP vector is both dynamin and clathrin-dependent. Following endocytosis, the majority of AAVP particles are sequestered by the endosomal-lysosomal degradative pathway, which presents a major obstacle to gene delivery by the vector. The feasibility of improving AAVP-mediated gene transfer through endosomal/lysosomal disruption was demonstrated using the lysosomotropic agent chloroquine. Subsequently, novel multifunctional AAVP vectors bearing endosomal-escape peptides were generated. These novel vectors demonstrated improved transgene expression and retained integrin-targeting capabilities of the RGD peptide. These studies will prove invaluable for the future development of AAVP. Furthermore, the findings presented in this thesis underline the importance of such studies for the improvement of gene therapy vectors.
Additional file 2: of Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes
Creators: name: Alneberg, Johannes
name: Karlsson, Christofer
name: Anna-Maria Divne
name: Bergin, Claudia
name: Homa, Felix
name: Lindh, Markus
name: Hugerth, Luisa
name: Ettema, Thijs
name: Bertilsson, Stefan
name: Andersson, Anders
name: Jarone Pinhassi
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Figure S1. Hierarchical single-linkage clustering of SAGs and MAGs based on distances generated by MASH. Genome names starting with â BACLâ indicate MAGs and the number following indicates the Baltic Sea cluster. Leaves joined by nodes within a distance of 0.10 are grouped by color of their leftmost branches. (PDF 71 kb)
Oral history interview with Whittier Alexander Sengstacke, 1971
Publisher: name: Columbia University
Year: 2019
Subjects: Editors
Newspaper publishing--Economic aspects--United States
Advertising--Newspapers
Journalism--Social aspects
Journalists
African Americans--Civil rights
African American press
African American journalists

description: In this 1971 interview with Henry La Brie III, Whittier Alexander Sengstacke (1916-1996) discusses his views on the black press from the vantage point of his work at the Tri-State Defender. The issues he covers include what readers want, the importance of the Negro press, and the need for nationally distributed black newspapers. Sengstacke shares his views on sensationalism in the black press and its effect on advertising revenue, the challenges weekly newspapers face in reporting news after its been previously reported in the dailies, and the need for a black news service. He also shares his views on the effects of the Kerner Commission, unionization's effects on the black press, and the importance of the black press being owned and operated by African Americans. Sengstacke shares his views on measures of success, the need for the community to see themselves represented in and reported on in local papers, his focus on the look and contents of the Tri-State Defender, and its sources of revenue. Finally, Sengstacke provides insights on the role of the radio station WDIA in radio programing marketed towards the black community.
The Direct Detection of Non-Baryonic Dark Matter in the Galaxy?
Creators: name: Hawkins, M. R. S.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: It has been argued in a number of recent papers that dark matter is in the form of Jupiter mass primordial black holes which betray their presence by microlensing quasars. This lensing accounts for a number of characteristic properties of quasar light curves, in both single quasars and gravitationally lensed multiple systems, which are not explained on the basis of intrinsic variation. One prediction of this idea is that Jupiter mass bodies will be detected by the MACHO experiment as short events of about 2 days duration, although the expected frequency of detection is still very hard to estimate. However, the recent report by the MACHO group of the detection of a Jupiter mass body in the direction of the Galactic bulge is consistent with this prediction, and is possibly the first direct detection of non-baryonic matter in the Galaxy.
description: Accepted for publication as a letter in MNRAS, 6 pages of LaTex
title: 03_0062
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
Heavy-light meson decay constants from NRQCD: an analysis of the 1/M corrections
Creators: name: Collins, S.
name: Heller, U. M.
name: Sloan, J.
name: Shigemitsu, J.
name: Ali-Khan, A.
name: Davies, C.
Publisher: name: arXiv
Year: 1995
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: We present {\it preliminary} results for the decay constants of heavy-light mesons using NRQCD heavy and tadpole improved Clover light quarks. A comparison is made with data obtained using Wilson light quarks. We present an analysis of the 1/M corrections to the decay constants in the static limit and compare with the predictions of HQET.
description: Contribution to Lattice 95, 4 pages uuencoded compressed postscript file
Oral history interview with Whitney North Seymour 1977
Publisher: name: Columbia University
Year: 2020
Subjects: Lawyers
Law--United States
Law partnership
Bar associations
Conservation of natural resources
Practice of law

description: Family background; education, University of Wisconsin and Columbia Law School, 1920-1923; Angelo Herndon and other cases handled as attorney, Simpson, Thacher & Bartlett, 1924- ; work with Landmarks Conservancy in New York City, other environmental and cultural organizations; American Bar Association activities, 1937- ; discussion of professional standards, case presentation and tactics, selection process of judges, legal clinics and continuing legal education
New stellar encounters discovered in the second Gaia data release
Creators: name: Bailer-Jones, C. A. L.
name: Rybizki, J.
name: Andrae, R.
name: Fouesneau, M.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Passing stars may play an important role in the evolution of our solar system. We search for close stellar encounters to the Sun among all 7.2 million stars in Gaia-DR2 that have six-dimensional phase space data. We characterize encounters by integrating their orbits through a Galactic potential and propagating the correlated uncertainties via a Monte Carlo resampling. After filtering to remove spurious data, we find 694 stars that have median (over uncertainties) closest encounter distances within 5 pc, all occurring within 15 Myr from now. 26 of these have at least a 50% chance of coming closer than 1 pc (and 7 within 0.5 pc), all but one of which are newly discovered here. We further confirm some and refute several other previously-identified encounters, confirming suspicions about their data. The closest encounter in the sample is Gl 710, which has a 95% probability of coming closer than 0.08 pc (17 000 AU). Taking mass estimates from Gaia astrometry and multiband photometry for essentially all encounters, we find that Gl 710 also has the largest impulse on the Oort cloud. Using a Galaxy model, we compute the completeness of the Gaia-DR2 encountering sample as a function of perihelion time and distance. Only 15% of encounters within 5 pc occurring within +/- 5 Myr of now have been identified, mostly due to the lack of radial velocities for faint and/or cool stars. Accounting for the incompleteness, we infer the present rate of encounters within 1 pc to be 19.7 +/- 2.2 per Myr, a quantity expected to scale quadratically with the encounter distance out to at least several pc. Spuriously large parallaxes in our sample from imperfect filtering would tend to inflate both the number of encounters found and this inferred rate. The magnitude of this effect is hard to quantify.
description: 12 pages. Accepted to A&A. Added to this version: section 3.2 and Fig. 8 (CMD) with discussion of astrometric quality metrics; full versions of tables 2 and 3 as ancillary data
Electrospun scaffolds for tissue engineering
Creators: name: Muhamad, Farina
Publisher: name: Imperial College London
Year: 2012

description: A critical challenge in designing materials for tissue engineering (TE) is to provide essential cues that can control cellular behaviour and promote tissue regeneration. TE with fibrous scaffolds by using electrospinning is emerging as a major research area in the field of regenerative medicine. This thesis presents the development of novel electrospun fibrous acrylate scaffolds for bone TE. Acrylate fibrous scaffolds were developed by electrospinning photocrosslinkable and low molecular weight acrylate monomers, methyl acrylate (MA) and diethylene-glycol dimethacrylate (DEGMA). Photocrosslinked fibres were successfully produced by electrospinning different MA and DEGMA compositions and post-UV crosslinking. The ability to produce topologically and mechanically diverse fibrous scaffold materials was demonstrated. Varying MA and DEGMA composition affected overall fibre morphology, swelling and mechanics of the fibrous scaffold. An assessment of biological activity of the acrylate fibrous scaffold was performed to evaluate the effect of varying ratios of MA/DEGMA of the fibrous scaffold on the viability of two different cell types, osteosarcoma-derived osteoblastic cells (Saos-2) and mesenchymal stromal cells (hMSCs). The potential of MA/DEGMA fibrous scaffolds to support Saos-2 cell viability and proliferation was demonstrated. However, the considerable increase in apoptosis of hMSCs cultured on both fibrous and flat samples suggested a lower potential of the MA/DEGMA scaffolds to support hMSCs cell attachment and viability. The fibrous scaffolds were immobilized with synthetic peptides utilizing cysteine-functionalized RGD or DGEA peptide sequences in combination with MA/DEGMA monomers and by employing a photoinitiated mixed-mode thiol-acrylate polymerization mechanism. Cysteine-functionalized DGEA and RGD peptides were incorporated efficiently in the synthesized acrylate scaffold. The peptide-conjugated fibrous scaffolds showed increased hMSCs adhesion and viability. Through cell adhesion and soluble peptide competition assays, the bioactivity and specificity of each peptide conjugated to the scaffold was confirmed. Finally, hMSCs cultured on DGEA conjugated scaffolds exhibited the activation of osteogenic differentiation markers, alkaline phosphatase (ALP) and osteocalcin (OCN). The results presented in this thesis strongly suggest the potential of the acrylate fibrous scaffold for bone TE.
Additional file 2 of A comprehensive analysis of 195 DNA methylomes reveals shared and cell-specific features of partially methylated domains
Creators: name: Abdulrahman Salhab
name: NordstrĂśm, Karl
name: Gasparoni, Gilles
name: Kattler, Kathrin
name: Ebert, Peter
name: Ramirez, Fidel
name: Arrigoni, Laura
name: MĂźller, Fabian
name: Polansky, Julia K.
name: Cadenas, Cristina
name: G.Hengstler, Jan
name: Lengauer, Thomas
name: Manke, Thomas
name: JĂśrn Walter
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Cell Biology
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology

description: Supplementary materials. PDF document with supplementary figures and supplementary methods. (PDF 11,526 kb)
An investigation into the simultaneous impact of climate change and land use modification on a tri-trophic species interaction
Creators: name: Lakeman-Fraser, Poppy
Publisher: name: Imperial College London
Year: 2012

description: Nature is intrinsically complex; yet ecological research is steadily gaining insight into the relationships between abiotic and biotic conditions. This thesis seeks to examine these interactions; between the causal drivers of global environmental change (GEC) and between biotic units in which that change is manifested. Concern is mounting over the ecological surprises that multiple GEC drivers can exert on biota when they act simultaneously. Studying the greatest current threat to biodiversity, habitat modification, and the greatest potential future threat, climate change, I investigate the nature of these interactions. I determine whether they are of a synergistic nature, whereby one driver is exacerbated by another; or of an antagonistic nature, whereby the effect is reduced. These effects are quantified on two measures of biotic change: abundance and species interactions in a tri-trophic forest study system in New Zealand. Taking a range of methodological approaches I utilise: field observation analysis, in-situ experiments and ex-situ experiments to investigate aspects of the umbrella research question. Throughout this research I study a tri-trophic biotic system in which to investigate broad ecological trends: an understory shrub, Macropiper excelsum; its herbivorous moth, Cleora scriptaria; and the herbivore’s endoparasitoids, Aleiodes declanae and Meteorus pulchricornis. Three principal findings emerge from this investigation. Firstly, although climate and habitat fragmentation exhibit a mixture of effects on biota, when they interact, the net effects are all seemingly negative: abundance is reduced and the frequency of biotic interactions decrease. Secondly, these drivers combine in a non-additive fashion depending upon the trophic level and biotic measure assessed: antagonistically interacting to impact the plant species and species interactions and synergistically interacting to impact the insect species and abundance. Thirdly, the influence of interspecific relationships on dynamics within this study system is ostensibly comparable to the impact of anthropogenic pressures. This research suggests that, where possible, it is vitally important to investigate all known simultaneous drivers of change, to specify which taxonomic unit is being studied and to integrate biotic interactions when predicting the impacts on biodiversity in a changing world.