cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Spontaneous Lorentz Symmetry Breaking by Anti-Symmetric Tensor Field
Creators: name: Higashijima, Kiyoshi
name: Yokoi, Naoto
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We study the spontaneous Lorentz symmetry breaking in a field theoretical model in (2+1)-dimension, inspired by string theory. This model is a gauge theory of an anti-symmetric tensor field and a vector field (photon). The Nambu-Goldstone (NG) boson for the spontaneous Lorentz symmetry breaking is identified with the unphysical massless photon in the covariant quantization. We also discuss an analogue of the equivalence theorem between the amplitudes for emission or absorption of the physical massive anti-symmetric tensor field and those of the unphysical massless photon. The low-energy effective action of the NG-boson is also discussed.
description: 18 pages, Latex file, no figure
title: PiK – Ein Instrument zur Messung von Patientenzufriedenheit in der hausärztlichen Konsultation
Creators: name: Stark, Stefanie
name: Worm, Lukas
name: Roos, Marco
name: Burggraf, Larissa
Publisher: name: German Medical Science GMS Publishing House
Year: 2019
Subjects: subject: 610 Medical sciences; Medicine

description: Der Arzt-Patienten-Kommunikation wird in der aktuellen Forschung ein hoher Stellenwert für den Konsultationsverlauf beigemessen. Folgt man diesem Ansatz, lässt sich konstatieren, dass die hausärztliche Konsultation maßgeblich durch Kommunikation mit dem Patienten in Form von Beratung,[zum vollständigen Text gelangen Sie über die oben angegebene URL]
description: 18. Deutscher Kongress für Versorgungsforschung (DKVF)
Critical behavior of a non-equilibrium interacting particle system driven by an oscillatory field
Creators: name: Monetti, Roberto A.
name: Albano, Ezequiel V.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: First- and second-order temperature driven transitions are studied, in a lattice gas driven by an oscillatory field. The short time dynamics study provides upper and lower bounds for the first-order transition points obtained using standard simulations. The difference between upper and lower bounds is a measure for the strength of the first-order transition and becomes negligible small for densities close to one half. In addition, we give strong evidence on the existence of multicritical points and a critical temperature gap, the latter induced by the anisotropy introduced by the driving field.
description: 12 pages, 4 figures; to appear in Europhys. Lett
Additional file 1 of A framework for designing medical devices resilient to low-resource settings
Creators: name: Piaggio, Davide
name: Castaldo, Rossana
name: Cinelli, Marco
name: Cinelli, Sara
name: Maccaro, Alessia
name: Pecchia, Leandro
Publisher: name: figshare
Year: 2021
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 1. is a copy of the final version of the questionnaire.
Efficient Monte Carlo Methods for Cyclic Peptides
Creators: name: Wu, Minghong G.
name: Deem, Michael W.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Biological Physics (physics.bio-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: We present a new, biased Monte Carlo scheme for simulating complex, cyclic peptides. Backbone atoms are equilibrated with a biased rebridging scheme, and side-chain atoms are equilibrated with a look-ahead configurational bias Monte Carlo. Parallel tempering is shown to be an important ingredient in the construction of an efficient approach.
description: LaTeX source, 10 EPS figures, to appear in Molecular Physics
Additional file 1 of Relation of severe COVID-19 in Scotland to transmission-related factors and risk conditions eligible for shielding support: REACT-SCOT case-control study
Creators: name: McKeigue, Paul M.
name: McAllister, David A.
name: Caldwell, David
name: Gribben, Ciara
name: Bishop, Jen
name: McGurnaghan, Stuart
name: Armstrong, Matthew
name: Delvaux, Joke
name: Colville, Sam
name: Hutchinson, Sharon
name: Robertson, Chris
name: Lone, Nazir
name: McMenamin, Jim
name: Goldberg, David
name: Colhoun, Helen M.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Biotechnology
subject: Science Policy
subject: Computational Biology

description: Additional file 1 Supplementary Figure and Tables.
MOESM6 of Ultrasmall nanostructured drug based pH-sensitive liposome for effective treatment of drug-resistant tumor
Creators: name: Li, Yanyan
name: Zhai, Yongxia
name: Liu, Wei
name: Zhang, Kaixiang
name: Liu, Junjie
name: Shi, Jinjin
name: Zhang, Zhenzhong
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Plant Biology
subject: FOS: Biological sciences

description: Additional file 6. Cell viability of MCF-7/ADR cells treated with different concentrations of blank carrier.
title: Was erwarten Patienten von der Behandlung mit Kompressionsstrümpfen? Entwicklung des Fragebogens Patient Benefit Index-Kompression (PBI-Comp)
Creators: name: Blome, Christine
name: Bruhns, Alina
name: Thomae, Hans-Jürgen
name: Augustin, Matthias
name: Bruning, Guido
Publisher: name: German Medical Science GMS Publishing House
Year: 2019
Subjects: subject: 610 Medical sciences; Medicine

description: Hintergrund: Das Tragen spezieller Kompressionsstrümpfe ist unter anderem nach Venenoperationen medizinisch geboten. Allerdings werden – laut klinischer Erfahrung und Patientenberichten – Kompressionsstrümpfe häufig nicht wie verordnet getragen, etwa weil die Handhabung [zum vollständigen Text gelangen Sie über die oben angegebene URL]
description: 18. Deutscher Kongress für Versorgungsforschung (DKVF)
Lagrangian fibrations of hyperkähler fourfolds
Creators: name: Huybrechts, Daniel
name: Xu, Chenyang
Publisher: name: arXiv
Year: 2019
Subjects: subject: Algebraic Geometry (math.AG)
subject: FOS: Mathematics

description: The base surface $B$ of a Lagrangian fibration $X\twoheadrightarrow B$ of a projective, irreducible symplectic fourfold $X$ is shown to be isomorphic to ${\mathbb P}^2$.
description: 12 pages
Additional file 5 of Transcriptome analysis of peripheral whole blood identifies crucial lncRNAs implicated in childhood asthma
Creators: name: Zheng, Peiyan
name: Huang, Chen
name: Leng, Dongliang
name: Sun, Baoqing
name: Zhang, Xiaohua Douglas
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 5: Figure S1. Sample clustering to detect outliers. All the samples were in the clusters, all samples have passed the cuts.
Additional file 4: of Tools used to assess the quality of peer review reports: a methodological systematic review
Creators: name: Superchi, Cecilia
name: JosĂŠ GonzĂĄlez
name: SolĂ, Ivan
name: Cobo, Erik
name: Hren, Darko
name: Boutron, Isabelle
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Cell Biology
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Classification of peer review report quality components. (PDF 2660 kb)
Additional file 1 of Peripheral administration of SOD1 aggregates does not transmit pathogenic aggregation to the CNS of SOD1 transgenic mice
Creators: name: Keskin, Isil
name: Ekhtiari Bidhendi, Elaheh
name: Marklund, Matthew
name: Andersen, Peter M.
name: Brännström, Thomas
name: Marklund, Stefan L.
name: Nordström, Ulrika
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1. Disease and survival data, SOD1 aggregate levels in tissue samples, and detergent resistance of hSOD1 aggregates.
Additional file 3: of Tools used to assess the quality of peer review reports: a methodological systematic review
Creators: name: Superchi, Cecilia
name: JosĂŠ GonzĂĄlez
name: SolĂ, Ivan
name: Cobo, Erik
name: Hren, Darko
name: Boutron, Isabelle
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Science Policy

description: Included studies. (PDF 244 kb)
Wilson Loops in ${\cal N}=4$ Supersymmetric Yang-Mills Theory from Random Matrix Theory
Creators: name: Akemann, G.
name: Damgaard, P. H.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Based on the AdS/CFT correspondence, string theory has given exact predictions for circular Wilson loops in U(N) ${\cal N}=4$ supersymmetric Yang-Mills theory to all orders in a 1/N expansion. These Wilson loops can also be derived from Random Matrix Theory. In this paper we show that the result is generically insensitive to details of the Random Matrix Theory potential. We also compute all higher $k$-point correlation functions, which are needed for the evaluation of Wilson loops in arbitrary irreducible representations of U(N).
description: LaTeX, 9 pages. v3: eqs. (30),(31),(33) corrected
MOESM2 of Asp305Gly mutation improved the activity and stability of the styrene monooxygenase for efficient epoxide production in Pseudomonas putida KT2440
Creators: name: Tan, Chunlin
name: Zhang, Xian
name: Zhu, Zhijing
name: Xu, Meijuan
name: Yang, Taowei
name: Osire, Tolbert
name: Yang, Shangtian
name: Rao, Zhiming
Publisher: name: figshare
Year: 2019
Subjects: Biochemistry
Chemical Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Developmental Biology

description: Additional file 2: Figure S2. Effect of water-miscible and water-immiscible organic solvents on SMO activity.
Exact relativistic Green's functions for the time-independent potentials
Creators: name: Simonov, Yu. A.
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Relativistic formalism of Green's functions is dicussed in QCD and QED,where the relativistic Green's functions are constructed using the Schwinger proper time formalism and the Fock-Feynman-Schwinger method.As a result a simple and exact method is found for the relativistic systems,where the interaction can be written in a time-independent form.In this case one can write the relativistic Green's function as a one-dimensional integral of the corresponding nonrelativistic Green's function.The explicit example for the problem of a charge in the constant magnetic field is discussed in detail,and the exact agreement with the Schwinger relativistic form is demonstrated. A similar analysis is performed in the relativistiv Coulomb probem,supporting the accuracy of the proposed relativistic formalism.
description: 24 pages,1 figure,new refs added
General relativity in a nutshell II
Creators: name: Pinochet, Jorge
Publisher: name: arXiv
Year: 2024
Subjects: subject: Popular Physics (physics.pop-ph)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: The aim of this work is to use the notions of Riemann's geometry introduced in Part I, to analyze the foundations of Einstein's theory of general relativity.
description: 14 pages, 11 figures
A Chip-scale, Full-Stokes Polarimeter
Creators: name: Lin, Zhongjin
name: Rusch, Leslie
name: Chen, Yuxuan
name: Shi, Wei
Publisher: name: arXiv
Year: 2019
Subjects: subject: Applied Physics (physics.app-ph)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: The polarization of light conveys unique information that can be exploited by crucial applications. The bulky and costly discrete optical components used in conventional polarimeters limit their broad adoption. A compact, low-cost polarimeter would bring this functionality into a myriad of new scenarios and revolutionize its exploitation. Here we present a high-performance, full-Stokes polarimeter on a silicon chip. A surface polarization splitter and on-chip optical interferometer circuit produce the analysis matrix of an optimally conditioned polarimeter. This solid-state polarimeter is a system-on-a-chip with exceptional compactness, stability, and speed that could be used singly or in integrated arrays. Large arrays can increase the speed and resolution of full-Stokes imaging; therefore, our design provides a scalable polarimeter solution.
description: 5 figures
New Bounds on Dark Energy Induced Fifth Forces
Creators: name: Brax, Philippe
name: Valageas, Patrick
name: Vanhove, Pierre
Publisher: name: arXiv
Year: 2019
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We consider the gravitational Wilsonian effective action at low energy when all the particles of the standard model have decoupled. When the ${\cal R}^2$ terms dominate, the theory is equivalent to a scalar-tensor theory with the universal coupling $β=1/\sqrt 6$ to matter for which we present strong lower and upper bounds on the scalaron mass $m$ obtained by using results from the Eöt-Wash experiment on the modification of the inverse-square law, the observations of the hot gas of galaxy clusters and the Planck satellite data on the neutrino masses. In terms of the range of the scalar interaction mediated over a distance of order $m^{-1}$, this leads to the small interval $4\,μm \lesssim m^{-1} \lesssim 68\, μm$ within reach of future experimental tests of deviations from Newton's gravitational inverse-square law.
description: 13 pages. v2: version to appear in PRD. Updated results using Planck 2018 bound on neutrino masses. References added
Deep learning enables high-throughput analysis of particle-aggregation-based bio-sensors imaged using holography
Creators: name: Wu, Yichen
name: Ray, Aniruddha
name: Wei, Qingshan
name: Feizi, Alborz
name: Tong, Xin
name: Chen, Eva
name: Luo, Yi
name: Ozcan, Aydogan
Publisher: name: arXiv
Year: 2018
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: Applied Physics (physics.app-ph)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: Aggregation-based assays, using micro- and nano-particles have been widely accepted as an efficient and cost-effective bio-sensing tool, particularly in microbiology, where particle clustering events are used as a metric to infer the presence of a specific target analyte and quantify its concentration. Here, we present a sensitive and automated readout method for aggregation-based assays using a wide-field lens-free on-chip microscope, with the ability to rapidly analyze and quantify microscopic particle aggregation events in 3D, using deep learning-based holographic image reconstruction. In this method, the computation time for hologram reconstruction and particle autofocusing steps remains constant, regardless of the number of particles/clusters within the 3D sample volume, which provides a major throughput advantage, brought by deep learning-based image reconstruction. As a proof of concept, we demonstrate rapid detection of herpes simplex virus (HSV) by monitoring the clustering of antibody-coated micro-particles, achieving a detection limit of ~5 viral copies per micro-liter (i.e., ~25 copies per test).
description: 15 pages, 5 figures
Additional file 1 of Cutaneous T-cell-attracting chemokine as a novel biomarker for predicting prognosis of idiopathic pulmonary fibrosis: a prospective observational study
Creators: name: Niwamoto, Takafumi
name: Handa, Tomohiro
name: Murase, Yuko
name: Nakatsuka, Yoshinari
name: Tanizawa, Kiminobu
name: Taguchi, Yoshio
name: Tomioka, Hiromi
name: Tomii, Keisuke
name: Kita, Hideo
name: Uyama, Michihiro
name: Tsuchiya, Michiko
name: Emura, Masahito
name: Kawamura, Tetsuji
name: Arai, Naoki
name: Arita, Machiko
name: Uno, Kazuko
name: Yoshizawa, Akihiko
name: Uozumi, Ryuji
name: Yamaguchi, Izumi
name: Matsuda, Fumihiko
name: Chin, Kazuo
name: Hirai, Toyohiro
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: 60506 Virology

description: Additional file 1: Table S1. Results of 48-plex measurement in the sera of IPF patients (discovery cohort) and controls and the bronchoalveolar lavage fluid of IPF patients. Measurements (median and IQR) of 48 cytokines in the discovery cohort sera (n = 100) and the control group sera (n = 32), p-values for between-group comparisons, and the measurements of BALF in the discovery cohort (n = 30).
Particle dynamics in sheared granular matter
Creators: name: Losert, W.
name: Bocquet, L.
name: Lubensky, T. C.
name: Gollub, J. P.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: The particle dynamics and shear forces of granular matter in a Couette geometry are determined experimentally. The normalized tangential velocity $V(y)$ declines strongly with distance $y$ from the moving wall, independent of the shear rate and of the shear dynamics. Local RMS velocity fluctuations $δV(y)$ scale with the local velocity gradient to the power $0.4 \pm 0.05$. These results agree with a locally Newtonian, continuum model, where the granular medium is assumed to behave as a liquid with a local temperature $δV(y)^2$ and density dependent viscosity.
Additional file 1 of Engaging multi-stakeholder perspectives to identify dementia care research priorities
Creators: name: Patel, Neela K.
name: Masoud, Sara S.
name: Meyer, Kylie
name: Davila, Angelica V.
name: Rivette, Sheran
name: Glassner, Ashlie A.
name: James, Deborah
name: White, Carole L.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Neuroscience
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1 : Supplemental Table 1. Percentage Selecting Research Topic as “Very Important” Overall and by Stakeholder Group.
Hall Effect of La2/3(Ca,Pb)1/3MnO3 Single Crystals near the Critical Temperature
Creators: name: Chun, S. H.
name: Salamon, M. B.
name: Han, P. D.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The Hall resistivity rho_{xy} of a La_{2/3}(Ca,Pb)_{1/3}MnO_3 single crystal has been measured as a function of temperature and field. The overall behavior is similar to that observed previously in thin-films. At 5 K, rho_{xy} is positive and linear in field, indicating that the anomalous contribution $R_S$ is negligible. However, the effective carrier density in a free electron model is n_{eff}=2.4 holes/Mn, even larger than the 0.85-1.9 holes/Mn reported for thin-films and far larger than the 0.33 holes/Mn expected from the doping level. As temperature increases, a strong, negative contribution to rho_{xy} appears, that we ascribe to R_S. Using detailed magnetization data, we separate the ordinary (\propto B) and anomalous (\propto M) contributions. Below T_C, R_S \propto rho_{xx}, indicating that magnetic skew scattering is the dominant mechanism in the metallic ferromagnetic regime. At and above the resistivity-peak temperature, we find that rho_{xy}/rho_{xx}M is a constant, independent of temperature and field. This implies that the anomalous Hall coefficient is proportional to the magnetoresistance. A different explanation based on two fluid model is also presented.
description: revtex, 11 pages, 4 figures
Additional file 1: of Effect of maternal smoking in pregnancy and childhood on child and adolescent sleep outcomes to 21â years: a birth cohort study
Creators: name: OâCallaghan, Frances
name: OâCallaghan, Michael
name: Scott, James
name: Najman, Jake
name: Mamun, Abdullah
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: MUSP maternal first clinic visit. (PDF 304 kb)
Additional file 1 of Process evaluation of the Sophia Step Study- a primary care based three-armed randomized controlled trial using self-monitoring of steps with and without counseling in prediabetes and type 2 diabetes
Creators: name: Rossen, Jenny
name: Hagströmer, Maria
name: Yngve, Agneta
name: Brismar, Kerstin
name: Ainsworth, Barbara
name: Johansson, Unn-Britt
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Science Policy

description: Additional file 1: Supplementary Table. Characteristics per primary care center.
Additional file 1 of Dispersal ability, habitat characteristics, and sea-surface circulation shape population structure of Cingula trifasciata (Gastropoda: Rissoidae) in the remote Azores Archipelago
Creators: name: Baptista, L.
name: Meimberg, H.
name: Ávila, S. P.
name: Santos, A. M.
name: Curto, M.
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Ecology

description: Additional file 1: Table S1. Complete list of all SSR primers designed in this study. Includes sequence of forward and reverse primers (5’-3’), the repetition motif, and number of repeats in the original sequence used for the primer design, the primer mix in which it was included for the Multiplex PCR, and allele length range (bp). Table S2. Estimates of evolutionary divergence (raw p-distances) between COI haplotypes of Cingula trifasciata. The analysis, performed on MEGA v7 [1], considered 44 haplotypes and 658 bp after excluding positions containing gaps and/or missing data for each sequence pair analysed. Populations of the sequences collapsed within each haplotype is referred in the “Pops” column, as follows: SMA-Santa Maria, CAL-Caloura, MOS-Mosteiros, GRW-Graciosa, PIX-Pico, FSC-São Jorge, FLW-Flores, VIG-Vigo. Table S3. Pairwise FST values between populations of Cingula trifasciata, based on the COI dataset. Table S4—Pairwise FST values between populations of Cingula trifasciata, based on the complete WAI dataset. Table S5 – Estimates of evolutionary divergence (raw p-distances) between COI sequences of several Rissoidae species. The analysis, performed on MEGA v7 [1], considered 18 sequences and 658 bp after excluding positions containing gaps and/or missing data for each sequence pair analysed. Sequences retrieved from GenBank [2], accession Number (AN) and species identification are provided in the table. Highlighted in bold is the divergence level between the recognized species Alvania formicarum and A. mediolittoralis, and between Cingula trifasciata from the Azores and Vigo. Figure S1. Genetics diversity of the SSR dataset in study. a) Variability measures estimated for each of the 26 SSR loci in study in complete whole amplicon information (WAI) dataset: number of alleles (Na) and polymorphic information content (PIC); b) Genetic diversity patterns across the five populations of Cingula trifasciata with more than five individuals: number of alleles (Na), number of different alleles with frequency over 5%, number of effective alleles (Ne), number of private alleles (Npa), expected (He) and observed (Ho) heterozygosity. Fig. S2. Genetic structure analysis of the complete WAI dataset of Cingula trifasciata. Inferred with STRUCTURE v2.3.4 [5, 6], reporting the results from K = 7 to K = 10.
Prediction of MoO2 as high capacity electrode material for (Na, K, Ca)-ion batteries
Creators: name: Rao, Yongchao
name: Yu, Song
name: Gu, Xiao
name: Duan, Xiangmei
Publisher: name: arXiv
Year: 2018
Subjects: subject: Computational Physics (physics.comp-ph)
subject: Applied Physics (physics.app-ph)
subject: FOS: Physical sciences

description: Na, K and Ca-ion battery electrode materials with appropriate electrochemical properties are desirable candidates for replacing lithium-ion batteries (LIBs) because of their natural richness and low cost. Recently, MoO2 has been reported as the anode material in LIBs, but so far not received attention in Na and other ion batteries. In this paper, the behaviors of Na, K, and Ca on MoO2 are investigated by first-principles calculations. These metal atoms strongly absorb on the hexagonal center of MoO2 and the adsorption results in semiconducting-metallic transition. The low diffusion barrier, 0.13, 0.08, 0.22 eV for Na, K, Ca, respectively, leads to an ultrahigh diffusivity. Importantly, the maximum metal-storage phases of MoO2 monolayer correspond to Na4MoO2, K2.5MoO2 and Ca3MoO2, with considerable theoretical specific capacities of 837, 523 and 1256 mAh g-1. The electrode materials exhibit moderate average voltage of 0.30, 0.75, 0.35 V, respectively. Our findings suggest that MoO2 monolayer can be utilized as a promising anode material with high capacities and high rate performance for next generation ion batteries.
Multiple bubble dynamics and velocity selection in Laplacian growth without surface tension
Creators: name: Mineev-Weinstein, Mark
name: Vasconcelos, Giovani L.
Publisher: name: arXiv
Year: 2015
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: Pattern Formation and Solitons (nlin.PS)
subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: FOS: Physical sciences

description: A new selection phenomenon in nonlinear interface dynamics is predicted. A generic class of exact regular unsteady multi-bubble solutions in a Hele-Shaw cell is presented. These solutions show that the case where the asymptotic bubble velocity, $U$, is twice greater than the velocity, $V$, of the uniform background flow, i.e., $U = 2V$, is the only attractor of the dynamics. Contrary to common belief, the predicted velocity selection requires neither surface tension nor other external regularization.
description: 27 pages, 1 figure. Final published version
Perspectives on theory at the interface of physics and biology
Creators: name: Bialek, William
Publisher: name: arXiv
Year: 2015
Subjects: subject: Biological Physics (physics.bio-ph)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: History and Philosophy of Physics (physics.hist-ph)
subject: Quantitative Methods (q-bio.QM)
subject: FOS: Physical sciences
subject: FOS: Biological sciences

description: Theoretical physics is the search for simple and universal mathematical descriptions of the natural world. In contrast, much of modern biology is an exploration of the complexity and diversity of life. For many, this contrast is prima facie evidence that theory, in the sense that physicists use the word, is impossible in a biological context. For others, this contrast serves to highlight a grand challenge. I'm an optimist, and believe (along with many colleagues) that the time is ripe for the emergence of a more unified theoretical physics of biological systems, building on successes in thinking about particular phenomena. In this essay I try to explain the reasons for my optimism, through a combination of historical and modern examples.
description: Based on a lecture at the 2014 conference on Theory in Biology, at the Simons Foundation
BPS Bound States of D6-branes and Lower Dimensional D-branes
Creators: name: Sato, Matsuo
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We construct 1/8, 1/4, and 1/2 BPS solutions spanned by diagonal elements of U(N) constant fluxes in the 6+1 dimensional U(N) super Yang-Mills theory on T^6 with topological stability. These solutions represent BPS bound states of D0, D2, D4, and D6 branes. The consistency with the D-brane charge conservation implies that unstable D0-D2-D6-brane systems in a B field decay to the BPS solutions, in which lower dimensional D-branes are dissolved in D6-branes.
description: 18 pages, new referenes and a footnote added, some typos corrected
Additional file 2: of Tools used to assess the quality of peer review reports: a methodological systematic review
Creators: name: Superchi, Cecilia
name: JosĂŠ GonzĂĄlez
name: SolĂ, Ivan
name: Cobo, Erik
name: Hren, Darko
name: Boutron, Isabelle
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Cell Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Excluded studies. (PDF 332 kb)
Symmetries and order in cluster nuclei
Creators: name: Bijker, Roelof
Publisher: name: arXiv
Year: 2019
Subjects: subject: Nuclear Theory (nucl-th)
subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: It is shown that the rotational band structure of the cluster states in 12C and 16O can be understood in terms of the underlying discrete symmetry that characterizes the geometrical configuration of the alpha-particles, i.e. an equilateral triangle for 12C, and a regular tetrahedron for 16O. The structure of rotational bands provides a fingerprint of the underlying geometrical configuration of alpha-particles. Finally, some first results are presented for odd-cluster nuclei.
description: Invited talk at Symmetries and Order: Algebraic Methods in Many-Body Systems, October 5-6, 2018, Yale University. 8 pages, 3 figures, 3 tables, to be published in AIP Conf. Proc. (2019)
Topology dependent quantities at the Anderson transition
Creators: name: Slevin, Keith
name: Ohtsuki, Tomi
name: Kawarabayashi, Tohru
Publisher: name: arXiv
Year: 2000
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The boundary condition dependence of the critical behavior for the three dimensional Anderson transition is investigated. A strong dependence of the scaling function and the critical conductance distribution on the boundary conditions is found, while the critical disorder and critical exponent are found to be independent of the boundary conditions.
Geometrical phase and Hall effect associated with the transverse spin of light
Creators: name: Lai, Meng-Yun
name: Wang, Yong-Long
name: Liang, Guo-Hua
name: Zong, Hong-Shi
Publisher: name: arXiv
Year: 2019
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: By analyzing the vectorial Helmholtz equation within the thin-layer approach, we find that light acquires a novel geometrical phase, in addition to the usual one (the optical Berry phase), during the propagation along a curved path. Unlike the optical Berry phase, the novel geometrical phase is induced by the transverse spin along the binormal direction and associated with the curvature of the curve. Furthermore, we show a novel Hall effect of light induced by the torsion of the curve and associated with the transverse spin along the binormal direction, which is different from the usual spin Hall effect of light. Finally, we demonstrate that the usual and novel geometrical phase phenomena are described by different geometry-induced U(1) gauge fields in different adiabatic approximations. In the nonadiabatic case, these gauge fields are united in one effective equation by SO(3) group.
Additional file 3: of A tiered approach to genome-wide association analysis for the adherence of hulls to the caryopsis of barley seeds reveals footprints of selection
Creators: name: Wabila, Celestine
name: Neumann, Kerstin
name: Kilian, Benjamin
name: Radchuk, Volodymyr
name: Graner, Andreas
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Supporting information on methods and results (PCR conditions and primers, origin and distribution of landraces, average LD decay, information on associated SNPs in all subpanels, locus-specific LD plots). (DOCX 5841 kb)
Additional file 4 of Nutritional status in young children prior to the malaria transmission season in Burkina Faso and Mali, and its impact on the incidence of clinical malaria
Creators: name: de Wit, Mariken
name: Cairns, Matthew
name: Compaoré, Yves Daniel
name: Sagara, Issaka
name: Kuepfer, Irene
name: Zongo, Issaka
name: Barry, Amadou
name: Diarra, Modibo
name: Tapily, Amadou
name: Coumare, Samba
name: Thera, Ismaila
name: Nikiema, Frederic
name: Yerbanga, R. Serge
name: Guissou, Rosemonde M.
name: Tinto, Halidou
name: Dicko, Alassane
name: Chandramohan, Daniel
name: Greenwood, Brian
name: Ouedraogo, Jean Bosco
Publisher: name: figshare
Year: 2021
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Neuroscience
subject: Biotechnology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 4: Table S1. Association of baseline variables with low MUAC-for-age in two cohorts in Mali. Table S2. Association of baseline variables with stunting, wasting and underweight in 2016 in Mali.
Conjugate coupling induced symmetry breaking and quenched oscillations
Creators: name: Ponrasu, K.
name: Sathiyadevi, K.
name: Chandrasekar, V. K.
name: Lakshmanan, M.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Adaptation and Self-Organizing Systems (nlin.AO)
subject: FOS: Physical sciences

description: Spontaneous symmetry breaking (SSB) is essential and plays a vital role many natural phenomena, including the formation of Turing pattern in organisms and complex patterns in brain dynamics. In this work, we investigate whether a set of coupled Stuart-Landau oscillators can exhibit spontaneous symmetry breaking when the oscillators are interacting through dissimilar variables or conjugate coupling. We find the emergence of SSB state with coexisting distinct dynamical states in the parametric space and show how the system transits from symmetry breaking state to out-of-phase synchronized (OPS) state while admitting multistabilities among the dynamical states. Further, we also investigate the effect of feedback factor on SSB as well as oscillation quenching states and we point out that the decreasing feedback factor completely suppresses SSB and oscillation death states. Interestingly, we also find the feedback factor completely diminishes only symmetry breaking oscillation and oscillation death (OD) states but it does not affect the nontrivial amplitude death (NAD) state. Finally, we have deduced the analytical stability conditions for in-phase and out-of-phase oscillations, as well as amplitude and oscillation death states.
description: Accepted for publication in Europhysics Letters
Temperature Dependence of Facet Ridges in Crystal Surfaces
Creators: name: Davidson, Douglas
name: Nijs, Marcel den
Publisher: name: arXiv
Year: 1998
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: The equilibrium crystal shape of a body-centered solid-on-solid (BCSOS) model on a honeycomb lattice is studied numerically. We focus on the facet ridge endpoints (FRE). These points are equivalent to one dimensional KPZ-type growth in the exactly soluble square lattice BCSOS model. In our more general context the transfer matrix is not stochastic at the FRE points, and a more complex structure develops. We observe ridge lines sticking into the rough phase where thesurface orientation jumps inside the rounded part of the crystal. Moreover, the rough-to-faceted edges become first-order with a jump in surface orientation, between the FRE point and Pokrovsky-Talapov (PT) type critical endpoints. The latter display anisotropic scaling with exponent $z=3$ instead of familiar PT value $z=2$.
description: 12 pages, 19 figures
Additional file 4 of Methyltransferase-directed orthogonal tagging and sequencing of miRNAs and bacterial small RNAs
Creators: name: Mickutė, Milda
name: Kvederavičiūtė, Kotryna
name: Osipenko, Aleksandr
name: Mineikaitė, Raminta
name: Klimašauskas, Saulius
name: Vilkaitis, Giedrius
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 4: Table S10. The list of RNA and DNA oligonucleotides used for labelling of double-stranded substrates with AtHEN1. Table S11. The list of L. casei BL23 5S rRNA specific probes used for rRNA depletion. Table S12. DNA oligonucleotides used for Northern blot analysis.
Towards a mathematical definition of Coulomb branches of $3$-dimensional $\mathcal N=4$ gauge theories, II
Creators: name: Braverman, Alexander
name: Finkelberg, Michael
name: Nakajima, Hiraku
Publisher: name: arXiv
Year: 2016
Subjects: subject: Representation Theory (math.RT)
subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: Algebraic Geometry (math.AG)
subject: Differential Geometry (math.DG)
subject: FOS: Mathematics
subject: FOS: Physical sciences

description: Consider the $3$-dimensional $\mathcal N=4$ supersymmetric gauge theory associated with a compact Lie group $G_c$ and its quaternionic representation $\mathbf M$. Physicists study its Coulomb branch, which is a noncompact hyper-Kähler manifold with an $\mathrm{SU}(2)$-action, possibly with singularities. We give a mathematical definition of the Coulomb branch as an affine algebraic variety with $\mathbb C^\times$-action when $\mathbf M$ is of a form $\mathbf N\oplus\mathbf N^*$, as the second step of the proposal given in arXiv:1503.03676.
description: 54 pages, 1 figure; v2. 55 pages, Proof of Theorem 4.1 is corrected. Determine Coulomb branches for SL(2) completely. Poisson structure is symplectic on nonsingular locus; v3. Two different usages of the same symbol `z' are corrected. Hyperlinks to a companion paper are added; v4. 57 pages. A proof of independence from a choice of the decomposition N+N^* is given. Several minor changes; v5. typo;
Additional file 1 of Combined glucocorticoids and cyclophosphamide in the treatment of Graves’ ophthalmopathy: a systematic review and meta-analysis
Creators: name: Xiang, Qilang
name: Yang, Mengling
name: Luo, Wenxuan
name: Cao, Yuzi
name: Shuai, Shiquan
name: Wei, Xin
name: Xiong, Anji
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Chemical Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 1: Appendix 1. Search strategy. Appendix 2. The kappa score between the researchers. Appendix 3. PRISMA checklist. Appendix 4. The quality of evidence using the GRADE framework. Appendix 5. Assessment of study quality. Appendix 6. Funnel plot of meta-analysis of response rate (By R language 4.2.1). Appendix 7. Forest plot of meta-analysis of response rate using the “cut-and-fill method” (By R language 4.2.1).
Optimal decoding of information from a genetic network
Creators: name: Petkova, Mariela D.
name: Tkačik, Gašper
name: Bialek, William
name: Wieschaus, Eric F.
name: Gregor, Thomas
Publisher: name: arXiv
Year: 2016
Subjects: subject: Molecular Networks (q-bio.MN)
subject: Biological Physics (physics.bio-ph)
subject: FOS: Biological sciences
subject: FOS: Physical sciences

description: Gene expression levels carry information about signals that have functional significance for the organism. Using the gap gene network in the fruit fly embryo as an example, we show how this information can be decoded, building a dictionary that translates expression levels into a map of implied positions. The optimal decoder makes use of graded variations in absolute expression level, resulting in positional estimates that are precise to ~1% of the embryo's length. We test this optimal decoder by analyzing gap gene expression in embryos lacking some of the primary maternal inputs to the network. The resulting maps are distorted, and these distortions predict, with no free parameters, the positions of expression stripes for the pair-rule genes in the mutant embryos.
Additional file 3 of Nutritional status in young children prior to the malaria transmission season in Burkina Faso and Mali, and its impact on the incidence of clinical malaria
Creators: name: de Wit, Mariken
name: Cairns, Matthew
name: Compaoré, Yves Daniel
name: Sagara, Issaka
name: Kuepfer, Irene
name: Zongo, Issaka
name: Barry, Amadou
name: Diarra, Modibo
name: Tapily, Amadou
name: Coumare, Samba
name: Thera, Ismaila
name: Nikiema, Frederic
name: Yerbanga, R. Serge
name: Guissou, Rosemonde M.
name: Tinto, Halidou
name: Dicko, Alassane
name: Chandramohan, Daniel
name: Greenwood, Brian
name: Ouedraogo, Jean Bosco
Publisher: name: figshare
Year: 2021
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Neuroscience
subject: Biotechnology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 3: Table S1. Association of baseline variables with low MUAC-for-age in two cohorts in Burkina Faso. Table S2. Association of baseline variables with stunting, wasting and underweight in 2016 in Burkina Faso.
Weak ferromagnetism of quasi-one-dimensional S=1/2 antiferromagnet BaCu$_2$Ge$_2$O$_7$
Creators: name: Tsukada, I.
name: Takeya, J.
name: Masuda, T.
name: Uchinokura, K.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Weak ferromagnetism of quasi-one-dimensional S = 1/2 antiferromagnet BaCu$_2$Ge$_2$O$_7$ is studied by the magnetization measurement. The spontaneous magnetization appears along the b axis. The local symmetry between the in-chain nearest neighbor spins allows the presence of Dzyaloshinskii-Moriya interaction, and the only possible spatial configuration of the weak ferromagnetic moment per spin determines the sign of the inter-chain interaction. A weak $a$-axis magnetic field can change the direction of the magnetization to the $a$-axis direction, which shows that the spin chain forms a weakly coupled weak-ferromagnetic chain system.
description: 10 pages, 4 figures
Fourth-Order Cumulants to Characterize the Phase Transitions of a Spin-1 Ising Model
Creators: name: Tsai, Shan-Ho
name: Salinas, Silvio R. A.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Fourth-order cumulants of physical quantities have been used to characterize the nature of a phase transition. In this paper we report some Monte Carlo simulations to illustrate the behavior of fourth-order cumulants of magnetization and energy across second and first-order transitions in the phase diagram of a well known spin-1 Ising model. Simple ideas from the theory of thermodynamic fluctuations are used to account for the behavior of these cumulants.
description: 18 pages, Revtex, 8 encapsulated postscript figures
Integrable Sigma-models and Drinfeld-Sokolov Hierarchies
Creators: name: Evans, Jonathan M.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Local commuting charges in sigma-models with classical Lie groups as target manifolds are shown to be related to the conserved quantities appearing in the Drinfeld-Sokolov (generalized mKdV) hierarchies. Conversely, the Drinfeld-Sokolov construction can be used to deduce the existence of commuting charges in these and in wider classes of sigma-models, including those whose target manifolds are exceptional groups or symmetric spaces. This establishes a direct link between commuting quantities in integrable sigma-models and in affine Toda field theories.
description: 25 pages, LaTeX
Two-particle multiplets splitting as a guideline in nucleon pairing estimations
Creators: name: Imasheva, L. T.
name: Ishkhanov, B. S.
name: Sidorov, S. V.
name: Stepanov, M. E.
name: Tretyakova, T. Yu.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Nuclear Theory (nucl-th)
subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: The ground state multiplet structure for nuclei over the wide range of mass number $A$ was calculated in $δ$-approximation and different mass relations for pairing energy was analysed in this work. Correlation between the calculated multiplet structure and experimental data offer a guideline in deciding between mass relations for nucleon pairing.
description: 6 pages, 2 fig., Proceedings of Intern. Session-Conference of the Section of Nuclear Physics of PSD RAS (April 12 - 15, 2016, JINR Dubna), to be published in Journal Physics of Elementary Particles and Atomic Nuclei (PEPAN)