cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 2 of Myc-associated zinc-finger protein promotes clear cell renal cell carcinoma progression through transcriptional activation of the MAP2K2-dependent ERK pathway
Creators: name: Ren, Li-Xin
name: Qi, Jin-Chun
name: Zhao, An-Ning
name: Shi, Bei
name: Zhang, Hong
name: Wang, Dan-Dan
name: Yang, Zhan
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Computational Biology

description: Additional file 2: Figure S1. The original immunoblots of Fig. 1C. Figure S2. The original immunoblots of Fig. 1G. Figure S3. The original immunoblots of Fig. 2B. Figure S4. The original immunoblots of Fig. 3A. Figure S5. The original immunoblots of Fig. 4D. Figure S6. The original immunoblots of Fig. 5E. Figure S7. The original immunoblots of Fig. 6B. Figure S8. The original immunoblots of Fig. 6C.
Numerical Simulation of Interaction between an L1 Stream and an Accretion Disk in a Close Binary System
Creators: name: Fujiwara, Hidekazu
name: Makita, Makoto
name: Nagae, Takizo
name: Matsuda, Takuya
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The hydrodynamic behavior of an accretion disk in a close binary system is numerically simulated. Calculation is made for a region including the compact star and the gas-supplying companion. The equation of state is that of an ideal gas characterized by the specific heat ratio $γ$. Two cases with $γ$ of 1.01 and 1.2 are studied. Our calculations show that the gas, flowing from the companion via a Lagrangian L1 point towards the accretion disk, forms a fine gas beam (L1 stream), which penetrates into the disk. No hot spot therefore forms in these calculations. Another fact discovered is that the gas rotating with the disk forms, on collision with the L1 stream, a bow shock wave, which may be called an L1 shock. The disk becomes hot because the L1 shock heats the disk gas in the outer parts of the disk, so that the spiral shocks wind loosely even with $γ=1.01$. The L1 shock enhances the non-axisymmetry of the density distribution in the disk, and therefore the angular momentum transfer by the tidal torque works more effectively. The maximum of the effective $α$ becomes $\sim 0.3$. The 'hot spot' is not formed in our simulations, but our results suggest the formation of the 'hot line', which is the L1 shock elongated along the penetrating L1 stream.
description: 23 pages, 14 figures, to appear in Prog. Theor. Phys. Vol.106, No.4
Radiative transfer in disc galaxies I - A comparison of four methods to solve the transfer equation in plane-parallel geometry
Creators: name: Baes, Maarten
name: Dejonghe, Herwig
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Accurate photometric and kinematic modelling of disc galaxies requires the inclusion of radiative transfer models. Due to the complexity of the radiative transfer equation (RTE), sophisticated techniques are required. Various techniques have been employed for the attenuation in disc galaxies, but a quantitative comparison of them is difficult, because of the differing assumptions, approximations and accuracy requirements which are adopted in the literature. In this paper, we present an unbiased comparison of four methods to solve the RTE, in terms of accuracy, efficiency and flexibility. We apply them all on one problem that can serve as a first approximation of large portions of disc galaxies: a one-dimensional plane-parallel geometry, with both absorption and multiple scattering taken into account, with an arbitrary vertical distributions of stars and dust and an arbitrary angular redistribution of the scattering. We find that the spherical harmonics method is by far the most efficient way to solve the RTE, whereas both Monte Carlo simulations and the iteration method, which are straightforward to extend to more complex geometries, have a cost which is about 170 times larger.
description: 12 pages, 4 figures, accepted for publication in MNRAS
Speyeria hesperis subsp. chitone
Creators: name: Dunford, James C.
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Nymphalidae
Speyeria
Speyeria hesperis
Speyeria hesperis chitone (edwards, 1879)

description: Speyeria hesperis chitone (Edwards, 1879)
(Figure 40)
 Argynnis chitone Edwards, 1879b: 82.
 Speyeria atlantis chitone (Edwards) [dos Passos and Grey 1947].
 Speyeria hesperis chitone (Edwards) [Scott et al. 1998].
 Common name. Chitone fritillary.
 Type deposited. Lectotype (male) designated by dos Passos and Grey (1947) at Carnegie Museum of Natural History (Figure 40). Brown (1965), however, noted the specimen selected by dos Passos and Grey (1947) was not the specimen of Edward’s original description. That specimen is housed in the National Museum of Natural History. Dos Passos and Grey were, however, at liberty to select any syntype and they chose the only male in the Edwards’ Collection housed at Carnegie.
 Type locality. Southern Utah and Arizona. Defined by dos Passos and Grey (1947) as Cedar Breaks National Monument, Iron County, Utah.
 Type label data. “ type Chitone [male] So. Utah; lectotype Argynnis chitone [male] W. H. Edwards designated by dos Passos and Grey 1947 ”.
 Identification, taxonomy, and variation. Adults of S. h. chitone are generally larger than S. h. wasatchia and have a heavier black patterning above. The ventral hindwing disc of S. h. chitone is either silver or unsilvered. Adult wingspan ranges from 50-55 mm.
 Range. La Sal and Abajo Mountains in Utah. It is also found near Cedar Breaks National Monument.
 Life history. Nothing could be gleaned from the literature.
description: Published as part of Dunford, James C., 2009, Taxonomic overview of the greater fritillary genus Speyeria Scudder and the atlantis - hesperis species complexes, with species accounts, type images, and relevant literature (Lepidoptera: Nymphalidae), pp. 1-74 in Insecta Mundi 2009 (90) on page 40, DOI: 10.5281/zenodo.5352660
ShapeMask: Learning to Segment Novel Objects by Refining Shape Priors
Creators: name: Kuo, Weicheng
name: Angelova, Anelia
name: Malik, Jitendra
name: Lin, Tsung-Yi
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: Instance segmentation aims to detect and segment individual objects in a scene. Most existing methods rely on precise mask annotations of every category. However, it is difficult and costly to segment objects in novel categories because a large number of mask annotations is required. We introduce ShapeMask, which learns the intermediate concept of object shape to address the problem of generalization in instance segmentation to novel categories. ShapeMask starts with a bounding box detection and gradually refines it by first estimating the shape of the detected object through a collection of shape priors. Next, ShapeMask refines the coarse shape into an instance level mask by learning instance embeddings. The shape priors provide a strong cue for object-like prediction, and the instance embeddings model the instance specific appearance information. ShapeMask significantly outperforms the state-of-the-art by 6.4 and 3.8 AP when learning across categories, and obtains competitive performance in the fully supervised setting. It is also robust to inaccurate detections, decreased model capacity, and small training data. Moreover, it runs efficiently with 150ms inference time and trains within 11 hours on TPUs. With a larger backbone model, ShapeMask increases the gap with state-of-the-art to 9.4 and 6.2 AP across categories. Code will be released.
Integrable many-body quantum Floquet-Thouless pumps
Creators: name: Friedman, Aaron J.
name: Gopalakrishnan, Sarang
name: Vasseur, Romain
Publisher: name: arXiv
Year: 2019
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Quantum Gases (cond-mat.quant-gas)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We construct an interacting integrable Floquet model featuring quasiparticle excitations with topologically nontrivial chiral dispersion. This model is a fully quantum generalization of an integrable classical cellular automaton. We write down and solve the Bethe equations for the generalized quantum model, and show that these take on a particularly simple form that allows for an exact solution: essentially, the quasiparticles behave like interacting hard rods. The generalized thermodynamics and hydrodynamics of this model follow directly. Although the model is interacting, its unusually simple structure allows us to construct operators that spread with no butterfly effect; this construction does not seem to be possible in other interacting integrable systems. This model illustrates the existence a new class of exactly solvable, interacting quantum systems specific to the Floquet setting.
description: 4+epsilon pages main text, 12 pages supplementary material
Thalamita prymna
Creators: name: Naderloo, Reza
name: Türkay, Michael
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Portunidae
Thalamita
Thalamita prymna

description: Thalamita prymna (Herbst, 1803)
 Persian Gulf. UAE (Titgen 1982; Apel & Spiridonov 1998; Apel 2001), Iran (present study).
 Iran. Hormozgan Province: Qeshm I. (Zeytun Park Beach, Plage-Simin, Suza, Namakdan).
 General distribution. Indo-West Pacific: South Africa, East Africa, Madagascar, Mauritius, Red Sea, Persian Gulf, Gulf of Oman, Pakistan, India, Andaman Is., Nicobar Is., Mergui Archipelago, Malaysia, Thailand, Japan, Philippines, Singapore, Indonesia, Lord Howe I., Australia (Western Australia, Northern Territory, Queensland), Samoa, Fiji, French Polynesia.
 Habitat. Rocky/cobble intertidal to 5 m.
 Remarks. Apel & Spiridonov (1998) stated that the record of this species by Titgen (1982) from Dubai (UAE) is most probably based on a misidentification of the closely related species T. rubridens Apel & Spiridonov, 1998. They mentioned that T. rubridens is a more common species in the south-western Persian Gulf, whereas T. prymna occurs very rarely in the Persian Gulf. In contrast, during the present study, T. prymna was found being a more common species along the Iranian coast compared to its congener T. rubridens which was collected only at one station.
description: Published as part of Naderloo, Reza & Türkay, Michael, 2012, Decapod crustaceans of the littoral and shallow sublittoral Iranian coast of the Persian Gulf: Faunistics, Biodiversity and Zoogeography 3374, pp. 1-67 in Zootaxa 3374 (1) on page 42, DOI: 10.11646/zootaxa.3374.1.1, http://zenodo.org/record/5253502
Additional file 1 of Myc-associated zinc-finger protein promotes clear cell renal cell carcinoma progression through transcriptional activation of the MAP2K2-dependent ERK pathway
Creators: name: Ren, Li-Xin
name: Qi, Jin-Chun
name: Zhao, An-Ning
name: Shi, Bei
name: Zhang, Hong
name: Wang, Dan-Dan
name: Yang, Zhan
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Computational Biology

description: Additional file 1: Figure S1. MAZ participate in STAT3 signal pathway in 293A cell. 293A cell transfected with shMAZ or pLKO vector, and then western blot detected several pathways signal molecular. Figure S2. SW839 cell transfected with oeMAZ or pWPI vector and then Raf1 or p-Raf1 protein level was detected by Western blot. Figure S3. SW839 cell transfected with indicated vectors and Western blot detected MEK1 protein expression.
Multiple imputation of missing values: further update of ice, with an emphasis on interval censoring
Creators: name: Royston, Patrick
name: Royston, Patrick
Publisher: name: Unknown
Year: 2007
Subjects: subject: Research Methods/ Statistical Methods
subject: ice
subject: uvis
subject: micombine
subject: ice_reformat
subject: multiple imputation
subject: interval censoring
subject: visualization
subject: censored survival data

description: Multiple imputation of missing data continues to be a topic of considerable interest and importance to applied researchers. In this article, the ice package for multiple imputation is further updated. Special attention in this article is paid to imputing interval-censored observations, and a suggestion to use imputation of right-censored survival data to elucidate covariate effects graphically.
Metallic-Line Stars Identified from Low Resolution Spectra of LAMOST DR5
Creators: name: Qin, Li
name: Luo, A-Li
name: Hou, Wen
name: Li, Yin-Bi
name: Zhang, Shuo
name: Wang, Rui
name: Wang, Li-Li
name: Kong, Xiao
name: Han, Jin-Shu
Publisher: name: arXiv
Year: 2019
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: LAMOST DR5 released more than 200,000 low resolution spectra of early-type stars with S/N>50. Searching for metallic-line (Am) stars in such a large database and study of their statistical properties are presented in this paper. Six machine learning algorithms were experimented with using known Am spectra, and both the empirical criteria method(Hou et al. 2015) and the MKCLASS package(Gray et al. 2016) were also investigated. Comparing their performance, the random forest (RF) algorithm won, not only because RF has high successful rate but also it can derives and ranks features. Then the RF was applied to the early type stars of DR5, and 15,269 Am candidates were picked out. Manual identification was conducted based on the spectral features derived from the RF algorithm and verified by experts. After manual identification, 9,372 Am stars and 1,131 Ap candidates were compiled into a catalog. Statistical studies were conducted including temperature distribution, space distribution, and infrared photometry. The spectral types of Am stars are mainly between F0 and A4 with a peak around A7, which is similar to previous works. With the Gaia distances, we calculated the vertical height Z from the Galactic plane for each Am star. The distribution of Z suggests that the incidence rate of Am stars shows a descending gradient with increasing jZj. On the other hand, Am stars do not show a noteworthy pattern in the infrared band. As wavelength gets longer, the infrared excess of Am stars decreases, until little or no excess in W1 and W2 bands.
description: 16 pages,10 figures, accepted by ApJS
Enhanced routines for instrumental variables/generalized method of moments estimation and testing
Creators: name: Baum, Christopher F.
name: Schaffer, Mark E.
name: Stillman, Steven
name: Baum, Christopher F.
name: Schaffer, Mark E.
name: Stillman, Steven
Publisher: name: Unknown
Year: 2007
Subjects: subject: Research Methods/ Statistical Methods
subject: ivactest
subject: ivendog
subject: ivhettest
subject: ivreg2
subject: ivreset
subject: overid
subject: ranktest
subject: instrumental variables
subject: weak instruments
subject: GMM
subject: endogeneity
subject: heteroskedasticity
subject: serial correlation
subject: HAC standard errors
subject: LIML
subject: CUE
subject: overidentifying restrictions
subject: Frisch–Waugh–Lovell theorem
subject: RESET
subject: Cumby–Huizinga test

description: We extend our 2003 paper on instrumental variables and generalized method of moments estimation, and we test and describe enhanced routines that address heteroskedasticity- and autocorrelation-consistent standard errors, weak instruments, limited-information maximum likelihood and k-class estimation, tests for endogeneity and Ramsey’s regression specification-error test, and autocorrelation tests for instrumental variable estimates and panel-data instrumental variable estimates.
The "Mysterious" Origin of Brown Dwarfs
Creators: name: Padoan, Paolo
name: Nordlund, AAke
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Hundreds of brown dwarfs (BDs) have been discovered in the last few years in stellar clusters and among field stars. BDs are almost as numerous as hydrogen burning stars and so a theory of star formation should also explain their origin. The ``mystery'' of the origin of BDs is that their mass is two orders of magnitude smaller than the average Jeans' mass in star--forming clouds, and yet they are so common. In this work we investigate the possibility that gravitationally unstable protostellar cores of BD mass are formed directly by the process of turbulent fragmentation. Supersonic turbulence in molecular clouds generates a complex density field with a very large density contrast. As a result, a fraction of BD mass cores formed by the turbulent flow are dense enough to be gravitationally unstable. We find that with density, temperature and rms Mach number typical of cluster--forming regions, turbulent fragmentation can account for the observed BD abundance.
description: 11 pages, 3 figures, ApJ submitted Error in equation 1 has been corrected. Improved figures
Assembly bias evidence in close galaxy pairs
Creators: name: Ferreras, Ignacio
name: Hopkins, Andrew M.
name: Lagos, Claudia
name: Sansom, Anne E.
name: Scott, Nicholas
name: Croom, Scott M.
name: Brough, Sarah
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: The growth channel of massive galaxies involving mergers can be studied via close pairs as putative merger progenitors, where the stellar populations of the satellite galaxies will be eventually incorporated into the massive primaries. We extend our recent analysis of the GAMA-based sample of close pairs presented in Ferreras et al. to the general spectroscopic dataset of SDSS galaxies (DR14), for which the high S/N of the data enables a detailed analysis of the differences between satellite galaxies with respect to the mass of the primary galaxy. A sample of approximately two thousand satellites of massive galaxies is carefully selected within a relatively narrow redshift range (0.07
description: 10 pages, 8 figures, 3 tables. Accepted for publication in MNRAS
Causal inference with observational data
Creators: name: Nichols, Austin
name: Nichols, Austin
Publisher: name: Unknown
Year: 2007
Subjects: subject: Research Methods/ Statistical Methods
subject: xtreg
subject: psmatch2
subject: nnmatch
subject: ivreg
subject: ivreg2
subject: ivregress
subject: rd
subject: lpoly
subject: xtoverid
subject: ranktest
subject: causal inference
subject: match
subject: matching
subject: reweighting
subject: propensity score
subject: panel
subject: instrumental variables
subject: excluded instrument
subject: weak identification
subject: regression
subject: discontinuity
subject: local polynomial

description: Problems with inferring causal relationships from nonexperimental data are briefly reviewed, and four broad classes of methods designed to allow estimation of and inference about causal parameters are described: panel regression, matching or reweighting, instrumental variables, and regression discontinuity. Practical examples are offered, and discussion focuses on checking required assumptions to the extent possible.
A generic function evaluator implemented in Mata
Creators: name: Stovring, Henrik
name: Stovring, Henrik
Publisher: name: Unknown
Year: 2007
Subjects: subject: Research Methods/ Statistical Methods
subject: rpnfcn()
subject: RPN
subject: Mata

description: Background : When implementing new statistical procedures, there is often a need for simple—and yet computationally efficient—ways of numerically evaluating composite distribution functions. If the statistical procedure must support calculations for censored and noncensored cases, those calculations should be carried out using efficient computational implementations of both definite and indefinite integrals (e.g., calculation of tail areas of distribution functions). Method : We developed a generic function evaluator such that users may specify a function using reverse Polish notation. As its argument the function evaluator takes a matrix of pointers and then applies the rows of this matrix to its internally defined stack of pointers. Accordingly, each row of the argument matrix defines a single operation such as evaluating a function on the current element of the stack, applying an algebraic operation to the two top elements of the stack, or manipulating the stack itself. Defining new composite distribution functions from other (atomic) distribution functions then corresponds to joining two or more function-defining matrices vertically. This approach can further be used to obtain integrals of any defined function. As an example we show how the density and distribution function for the minimum of two Weibull distributed random variables can be numerically evaluated and integrated. Results : The procedure provides a flexible and extensible framework for implementing numerical evaluation of general, composite distributions. The procedure is numerically relatively efficient, although not optimal.
Mata Matters: Structures
Creators: name: Gould, William
name: Gould, William
Publisher: name: Unknown
Year: 2007
Subjects: subject: Research Methods/ Statistical Methods
subject: Mata
subject: structures
subject: struct

description: Mata is Stata’s matrix language. In the Mata Matters column, we show how Mata can be used interactively to solve problems and as a programming language to add new features to Stata. Structures are the subject of this column. Structures are an advanced programming technique that can greatly simplify complicated code.
The Milky Way in X-rays for an outside observer: Log(N)-Log(S) and Luminosity Function of X-ray binaries from RXTE/ASM data
Creators: name: Grimm, H. -J.
name: Gilfanov, M.
name: Sunyaev, R.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We study the Log(N)-Log(S) and X-ray luminosity function in the 2-10 keV energy band, and the spatial (3-D) distribution of bright, log(L_X) > 34-35 erg/s, X-ray binaries in the Milky Way. In agreement with theoretical expectations and earlier results we found significant differences between the spatial distributions of low (LMXB) and high (HMXB) mass X-ray binaries. The volume density of LMXB sources peaks strongly at the Galactic Bulge. HMXBs tend to avoid the inner 3-4 kpc of the Galaxy, HMXBs are more concentrated towards the Galactic Plane and show clear signatures of the spiral structure in their spatial distribution. LMXB sources have a flatter Log(N)-Log(S) distribution and luminosity function than HMXBs. The integrated 2-10 keV luminosities of X-ray binaries, averaged over 1996--2000, are 2-3 * 10^39 (LMXB) and 2-3 * 10^38 (HMXB) erg/s. Normalised to the stellar mass and the star formation rate, respectively, these correspond to 5 * 10^28 erg/s/M_sol for LMXBs and 5 * 10^37 erg/s/(M_sol/yr) for HMXBs. Due to the shallow slopes of the luminosity functions the integrated emission of X-ray binaries is dominated by the 5-10 most luminous sources which determine the appearance of the Milky Way in the standard X-ray band for an outside observer. In particular variability of individual sources or an outburst of a bright transient source can increase the integrated luminosity of the Milky Way by as much as a factor of ~2. Although the average LMXB luminosity function shows a break near the Eddington luminosity for a 1.4 M_sol neutron star, at least 11 sources showed episodes of super-Eddington luminosity during ASM observations. We provide the maps of distribution of X-ray binaries in the Milky Way in various projections, which can be compared to images of nearby galaxies taken by CHANDRA and XMM-Newton.
description: 23 pages, 19 figures, accepted by A&A
Potential use of transrenal DNA for non-invasive monitoring and prognosis of colorectal cancer
Creators: name: Chen, Wei
name: Yingying Liao
name: Chunxia Yang
name: Zhicheng Fang
name: Boyi Liu
name: Zheng, Xiang
name: Chunfang Zhou
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Background: Anti-EGFR mAb are recommended treatment for metastatic colorectal cancer (mCRC). Accurate mutation profiling and disease monitoring are challenging. The current study investigates the potential use of transrenal DNA as a biomarker for disease management. Methods: Agreement between archival tissue specimens and transrenal DNA extracted from 200 post-treated mCRC patients was determined. Total DNA concentrations were measured and mutations within the KRAS and EGFR genes were profiled for each specimen. To ascertain therapy resistance; patients were serially monitored monthly. Results: Concordance measurement with matched tissues at baseline was remarkably high (92%) for EGFR and KRAS mutations. Sensitivity and specificity were 98.4% and 89.1% respectively. Newly detectable mutations for a subgroup of patients with initial wildtype characteristics were evident after 4 months of anti-EGFR mAb therapy. Survival analysis using adjusted estimates showed that patients detected by transrenal DNA for key mutations or had higher mutant DNA content had poorer outcome. Conclusion: Transrenal DNA offers new options to follow clinical treatment in mCRC. It demonstrates the ability to capture newly acquired mutations that has strong associative links to therapy resistance. Patients with these mutations fared poorly for survival outcomes and indicated possible prognostic value for transrenal DNA detection.
Speyeria hesperis subsp. dorothea Moeck 1947
Creators: name: Dunford, James C.
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Nymphalidae
Speyeria
Speyeria hesperis
Speyeria hesperis dorothea moeck, 1947

description: Speyeria hesperis dorothea Moeck, 1947
(Figure 45)
 Speyeria atlantis dorothea Moeck, 1947: 73-75.
 Speyeria hesperis dorothea Moeck [Scott et al. 1998].
 Common name. Dorothy’s fritillary.
 Type deposited. Holotype at American Museum of Natural History (Figure 45).
 Type locality. Sandia Peak, Sandia Mountains, Sandoval County, New Mexico.
 Type label data. “ HOLOTYPE [male] Speyeria atlantis dorothea A. H. Moeck; Sandia Peak, Sandia Mts., N. M., July 15, 1946 7,000 ft. (A. H. Moeck)”.
 Identification, taxonomy, and variation. Similar in size to S. h. nausicaa but basal suffusion of S. h. dorothea is somewhat heavier and black patterning is bolder. The ventral hindwing disc bear brilliant silver spots. Adult wingspan ranges from 55-70 mm. The genitalia are similar to those of the Callippe group (e.g., S. callippe, S. atlantis, S. egleis, S. adiaste).
 Range. Sandia, Chuska, Manzano Mountains, New Mexico.
 Life history. Adults in can be observed in open glades in the Sandia Mountains (Figure 51).
description: Published as part of Dunford, James C., 2009, Taxonomic overview of the greater fritillary genus Speyeria Scudder and the atlantis - hesperis species complexes, with species accounts, type images, and relevant literature (Lepidoptera: Nymphalidae), pp. 1-74 in Insecta Mundi 2009 (90) on page 43, DOI: 10.5281/zenodo.5352660
Charge-dependent pair correlations relative to a third particle in $p$+Au and $d$+Au collisions at RHIC
Creators: name: STAR Collaboration
Publisher: name: arXiv
Year: 2019
Subjects: subject: Nuclear Experiment (nucl-ex)
subject: High Energy Physics - Experiment (hep-ex)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Quark interactions with topological gluon configurations can induce chirality imbalance and local parity violation in quantum chromodynamics. This can lead to electric charge separation along the strong magnetic field in relativistic heavy-ion collisions -- the chiral magnetic effect (CME). We report measurements by the STAR collaboration of a CME-sensitive observable in $p$+Au and $d$+Au collisions at 200 GeV, where the CME is not expected, using charge-dependent pair correlations relative to a third particle. We observe strong charge-dependent correlations similar to those measured in heavy-ion collisions. This bears important implications for the interpretation of the heavy-ion data.
description: 8 pages, 4 figures
Medaeops neglectus
Creators: name: Naderloo, Reza
name: Türkay, Michael
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Xanthidae
Medaeops
Medaeops neglectus

description: Medaeops neglectus (Balss, 1920)
 Persian Gulf. First Persian Gulf record.
 Iran. Hormozgan Province: Qeshm I. (Zeytun Park Beach, Dustku).
 General distribution. Western Indian Ocean: East Africa, Madagascar, Mayotte I., Red Sea, Gulf of Aden, Persian Guf, Gulf of Oman.
 Habitat. Rocky/cobble intertidal.
 Remarks. Apel (2001) collected two specimens (one male and one female) from Abu Dhabi (UAE) in the Persian Gulf and identified them as M. granulosus (Haswell, 1882). One of us (R.N.) examined his specimens and found that they are completely similar to the present ones from the Iranian coast and could be convincingly assigned to M. neglectus rather than to M. granulosus. The latter was recorded as Medaeus granulosus by Stephensen (1946) from Jask at the Iranian coast of the Gulf of Oman, which is supported after a re-examination of his material. Stephensen’s (1946) material of M. granulosus was collected by the Danish Expedition in the subtidal zone at 30 m depth and the locality is outside of the Persian Gulf. The genus Medaeops currently includes seven very closely related species, of which Medaeops potens Mendoza, Chong & Ng, 2009, has a first male gonopod, which is very similar to that of M. neglectus, but regarding morphological description and keys provided by Guinot (1967), Serène (1984), McLay & Ng (2007) and Mendoza et al. (2009), the present specimens from the Iranian coast of the Persian Gulf can clearly be assigned to M. neglectus rather than any other congener. Medaeops granulosus was recorded by Jones (1986a) from Kuwait, and Tirmizi & Ghani (1996) from Pakistan. Apel (2001) stated that their record of the species is correct, whereas the drawings provided by them are very similar to M. neglectus. A thorough taxonomic revision of the genus is needed in order to clarify the position of the different species of Medaeops.
description: Published as part of Naderloo, Reza & Türkay, Michael, 2012, Decapod crustaceans of the littoral and shallow sublittoral Iranian coast of the Persian Gulf: Faunistics, Biodiversity and Zoogeography 3374, pp. 1-67 in Zootaxa 3374 (1) on page 44, DOI: 10.11646/zootaxa.3374.1.1, http://zenodo.org/record/5253502
CGM and their connection with the galaxies
Creators: name: Mohapatra, Abhisek
name: Srianand, R.
name: Pradhan, A. C.
Publisher: name: Zenodo
Year: 2021

description: In this talk, I will present initial results from the C III CGM survey (CIIICs). We have obtained a sample of metal-enriched cool gas traced by C III absorption at z ∼ 0.8-0.9 using HST/COS quasar spectra. Using photoionization models, we infer the number density (nH), Cabundance([C/H]) and line-of-sight thickness (L) of these absorption systems. We systematically search SDSS DR16 catalogue for galaxies associated with these absorbers within an impact parameter of 500 kpc. We find that these metal-enriched gas absorbers reside in group environments with at least two galaxies within the impact parameter of 500 kpc. We estimate various properties (star formation rate, stellar mass, age, etc.) of these associated galaxies using photometric/spectroscopic observations. We examine the kinematics of the C III absorbers relative to the galaxy systemic velocities and also explore the connection between different galaxy properties with the derived absorber properties.
ELLA NOOR APRIANI 2010111220030 A1 PENDIDIKAN SEJARAH TUGAS PRA UAS PROFESI KEGURUAN.pdf
Creators: name: Apriani, Ella Noor
Publisher: name: figshare
Year: 2021
Subjects: subject: 130313 Teacher Education and Professional Development of Educators
subject: FOS: Educational sciences

description: Pembelajaran merupakan sebuah proses hubungan timbal balik yang bersifat mengajar dan mendidik antara guru dengan peserta didik. Kompetensi guru juga penting untuk mengetahui tentang permasalahan dan minat peserta didik, disini guru harus memahami kepribadian, gaya belajar, maupun permasalahan yang dimiliki peserta didik, guru yang mempunyai kompetensi yang baik maka ia bisa merubah siswa yang berkepribadian buruk menjadi siswa yang berkepribadian baik. Dalam Undang-Undang No. 14 tahun 2005 tentang guru dan dosen menggariskan kompetensi pokok yang harus dimiliki guru dalah kompetensi profesional, kompetensi pedagogik, kompetensi sosial, dan kompetensi kepribadian (Susanto, 2020:62). Dampak pengembangan karir guru terhadap kualitas pembelajaran yaitu karena guru sebagai fasilitator dalam pembelajaran maka guru dituntut untuk meningkatkan kualitas dalam pembelajaran, agar menjadi guru yang paham teknologi dan bisa menjadi guru yang lebi professional lagi.
Additional file 2 of Long non-coding RNA BRE-AS1 inhibits the proliferation, migration, and invasion of cancer cells in triple-negative breast cancer and predicts patients’ survival by downregulating miR-21
Creators: name: Gao, Jianchao
name: Wang, Sisi
name: Zhang, Zhisheng
name: Li, Jun
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Hematology

description: Additional file 2: Supplemental material. Full-length blots of Western blot.
Metopograpsus thukuhar
Creators: name: Naderloo, Reza
name: Türkay, Michael
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Grapsidae
Metopograpsus
Metopograpsus thukuhar

description: Metopograpsus thukuhar (Owen, 1839)
 Persian Gulf. UAE (Al-Ghais & Cooper 1996; Hornby 1997), Iran (Naderloo 2011; present study).
 Iran. Hormozgan Province: Qeshm I. (mangroves of Naghasheh and Tabl), Bandar-Khamir. Bushehr Province: Khalij-Nayband.
 General distribution. Indo-West Pacific: South Africa, East Africa, Madagascar, Seychelles, Red Sea, Gulf of Aden, Persian Gulf, Gulf of Oman, Pakistan, India, Vietnam, China, Japan, Cocos-Keeling Is., Australia (Northern Territory, Queensland), Tahiti, Hawaiian Is.
 Habitat. Mangroves.
 Remarks. Metopograpsus thukuhar is a widely distributed species in Indo-West Pacific and has been well documented by several authors (e.g. Crosnier 1965; Holthuis 1977; Vannini & Valmori 1981; Tirmizi & Ghani 1996). This species is distinguishable from its sympatric congener in the region, M. messor, using several distinct characteristics which are provided together with biological accounts of the species by Naderloo (2011).
description: Published as part of Naderloo, Reza & Türkay, Michael, 2012, Decapod crustaceans of the littoral and shallow sublittoral Iranian coast of the Persian Gulf: Faunistics, Biodiversity and Zoogeography 3374, pp. 1-67 in Zootaxa 3374 (1) on page 46, DOI: 10.11646/zootaxa.3374.1.1, http://zenodo.org/record/5253502
Additional file 2 of miR-489-3p promotes malignant progression of non-small cell lung cancer through the inactivation of Wnt/β-catenin signaling pathway via regulating USP48
Creators: name: Zhang, Pei
name: Li, Li
name: Wang, Bing
name: Ran, Xu
name: Yang, Shengrong
name: Luo, Yujie
name: Li, Yunhe
name: Wang, Zhenghong
name: Liu, Yi
name: Zhu, Bing
Publisher: name: figshare
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Developmental Biology
subject: Cancer

description: Additional file 2: Overall Survival correlated with expression of miR−489−3p in TCGA−LUSC.
Nanosesarma jousseaumei
Creators: name: Naderloo, Reza
name: Türkay, Michael
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Sesarmidae
Nanosesarma
Nanosesarma jousseaumei

description: Nanosesarma jousseaumei (Nobili, 1906)
 Persian Gulf. Iran (Naderloo & Türkay 2009; Naderloo 2011; present study).
 Iran. Hormozgan Province: Qeshm I. (five stations around the island), Moghdan.
 General distribution. Western Indian Ocean: East Africa (Tanzania), Madagascar, Gulf of Aden (Djibouti, Obock), Persian Gulf.
 Habitat. Rocky/cobble intertidal.
 Remarks. Naderloo & Türkay (2009) redescribed and recorded N. jousseaumei from the Persian Gulf. Naderloo (2011) included this species in his work on the Grapsoid crabs of the Persian Gulf and Gulf of Oman and provided more detailed taxonomic remarks using morphology of the first male gonopod and the median tooth plate of gastric mills.
description: Published as part of Naderloo, Reza & Türkay, Michael, 2012, Decapod crustaceans of the littoral and shallow sublittoral Iranian coast of the Persian Gulf: Faunistics, Biodiversity and Zoogeography 3374, pp. 1-67 in Zootaxa 3374 (1) on page 47, DOI: 10.11646/zootaxa.3374.1.1, http://zenodo.org/record/5253502
title: A Novel Wavefront Sensor for Solar Adaptive Optics Based on Integrated Photonics
Creators: name: Arriero Lopez, Angela Maria
name: Garcia-Vazquez, Hugo
name: Diaz Garcia, Jose Javier
name: Rodriguez Ramos, Luis Fernando
name: Lopez Aguerri, Jose Alfonso
name: Alvarez Outerelo, David
name: Diaz Otero, Francisco Javier
name: Aguado Agelet, Fernando
Publisher: name: Proceedings of AO4ELT7 conference 2023 - Editors: Thierry Fusco and Benoit Neichel
Year: 2023
Subjects: SOLAR PHYSICS
ADAPTIVE OPTICS (AO)
PHOTONIC INTEGRATED CIRCUIT (PIC)
INTEGRATED PHOTONICS WAVEFRONT SENSOR (IP WFS)

description: In this work, a novel kind of wavefront sensor (WFS) for adaptive optics in solar physics based on integrated photonics is proposed. Shack-Hartmann and plenoptic sensors are limited to pupil sampling of approximately 8 cm because they need a solar granulation image with a minimum contrast to be able to compute displacements. To overcome this limitation and effectively use existing deformable mirrors with thousands of actuators, a novel WFS is proposed, which will be able to obtain wavefront phase differences of the beam with higher pupil sampling. The proposed WFS can increase the resolution and speed with respect to the other sensors as the incoming wavefront is obtained by passing the wavefront through optical fibres to the Integrated Photonics - Wavefront Sensor (IP-WFS) and directly measuring the phase differences without the generation of images. In the same way as Shack-Hartmann and plenoptic sensors, the proposed IP-WFS delivers data about the phase differences on the incoming wavefront to subsequently use this information to calculate the deformable mirror actuation. Consequently, the integration of the proposed IP-WFS in the current systems of adaptive optics can be performed without having to make drastic modifications to the existing instruments.
Tailoring chemotherapy supply according to patients’ preferences: a quantitative method in colorectal cancer care
Creators: name: Rosato, Rosalba
name: Cuonzo, Daniela Di
name: Ritorto, Giuliana
name: Fanchini, Laura
name: Bustreo, Sara
name: Racca, Patrizia
name: Pagano, Eva
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Medicine
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Objectives: The aim of this study was to conduct a discrete choice experiment with patients affected by colorectal cancer to understand their preferences for different attributes of the chemotherapy supply. Our overall goal is to provide evidence on the relative importance of each attribute in order to tailor chemotherapy supply according to patients' priorities in the design or reorganization processes of cancer services. Methods: Focus groups were used to identify the attributes and levels for the discrete choice experiment. The attributes were: continuity of care, understanding, information, treatment choice, and time for therapy. Respondents were asked to choose between two mutually exclusive hypothetical alternatives of chemotherapy supply. Patients completed the discrete choice experiment along with the health-related quality of life and patients’ satisfaction questions. Conditional and mixed logistic models were used to analyses the data. Results: Patients with colorectal cancer treated with chemotherapy (n = 76) completed the survey. The most important aspects of chemotherapy supply were: “Providing detailed and complete information” and “High ability in understanding” patients. Preferences were also influenced by the availability of a trusted doctor. Except for one attribute (waiting time for therapy), all other characteristics significantly influenced respondents’ preferences. Conclusions: Results should support a policy of strengthening medical doctors’ capabilities to communicate with patients, providing them complete information and involving them in the clinical decisions. Specifically, the findings should be used to improve the current provision of cancer care by identifying areas of preferred intervention from the perspectives of patients in order to tailor the service supply accordingly.
Speaking Stata: Counting groups, especially panels
Creators: name: Cox, Nicholas J.
name: Cox, Nicholas J.
Publisher: name: Unknown
Year: 2007
Subjects: subject: Research Methods/ Statistical Methods
subject: data management
subject: panels

description: Counting panels, and more generally groups, is sometimes possible in Stata through a reduction command (e.g., collapse, contract, statsby) that produces a smaller dataset or through a tabulation command. Yet there are also many problems, especially with irregular sets of observations for varying times, that do not yield easily to this approach. This column focuses on techniques for answering such questions while maintaining the same data structure. Especially useful are the Stata commands by: and egen and indicator variables constructed for the purpose. With by: we often exploit the fact that subscripts are defined within group, not within dataset. egen functions are often used to produce group-level statistics. Tagging each group just once ensures that summaries, including counts, are of groups, not individual observations.
Hedychridium viridisulcatum Lins. Linsenmaier 1968
Creators: name: Rosa, Paolo
name: Heim, René
name: Bernasconi, Marco Valerio
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Chrysididae
Hedychridium
Hedychridium viridisulcatum

description: Hedychridium viridisulcatum Linsenmaier, 1968
(Fig. 82A–82E)
Hedychridium (Hedychridium) viridisulcatum Linsenmaier, 1968: 25 (descr., ardens group).
Hedychridium adventicium Zimmermann, 1962: Arens 2014: 587 (synonymised).
Type locality. Greece, Turkey: “Griechenland, ♀ Type, ♂ Allotype, ♀ Paratype, von Pyrgos (Peloponnes), in Coll. m.; Klein-Asien, Konya und Mut, leg. Schmidt, ♂ Paratypen in Coll. Schmidt und m.”.
Holotype, ♀ and paratype, 1♀ [glued on the same label]: Graecia, Pelop. Pyrgos 17.VI.1961 leg. Linsenmaier // ♀ Type ♀ Paratype Hedychridium Ab. viridisulcatum Lins. Linsenmaier det. 1963 // NML _ ENT GBIF _ Chr0008626 (ex type-collection).
Allotype, ♂: Graecia, Pelop.Pyrgos 17.VI.1961 leg. Linsenmaier //♂Allotype Hedychridium Ab. viridisulcatum Lins. Linsenmaier det. 1963 // 212 // NML _ ENT GBIF _ Chr0008627 (ex type-collection).
Paratypes, 2♂: Konya As. Türk. 10.–12.VI.1966 leg. Josef Schmidt // Paratype Hedychridium Ab. viridisulcatum Lins. Linsenmaier det. 1966 // NML _ ENT GBIF _ Chr0008624 and NML _ ENT GBIF _Chr0008625.
Remarks. Arens (2014) synonymised Hedychridium viridisulcatum with H. adventicium Zimmermann, 1961.
description: Published as part of Rosa, Paolo, Heim, René & Bernasconi, Marco Valerio, 2022, The Palaearctic types of Chrysididae (Insecta, Hymenoptera) deposited in the Linsenmaier collection. Part 2. Elampini: genus Hedychridium Abeille de Perrin, 1878, pp. 1-94 in Zootaxa 5090 (1) on page 75, DOI: 10.11646/zootaxa.5090.1.1, http://zenodo.org/record/5836207
Distortion of secondaries in semi-detached binaries and the cataclysmic variable period minimum
Creators: name: Renvoize, V.
name: Baraffe, I.
name: Kolb, U.
name: Ritter, H.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Based on SPH simulations, we quantify the geometrical distortion effect due to tidal and rotational forces on polytropic secondaries in semi-detached binaries. The main effect is an expansion of the polytropic star, with an effect on the radius of $\sim$ 5%-12%, depending on the polytropic index and the mass ratio. We apply such distortion effects to the secular evolution of secondaries in cataclysmic variable systems. We focus on systems below the 2-3h period gap and that approach the minimum period. We find a significant increase of the predicted minimum period ($\sim$ 4% if changes in the secondary's thermal relaxation are approximately taken into account). Though an improvement, the effect is not big enough to solve the mismatch between predicted and observed minimum period at 80 min.
description: 9 pages, Latex file, uses aa.cls, accepted for publication in A&A
Additional file 1: of Transcriptome-wide association study and eQTL analysis to assess the genetic basis of bulb-yield traits in garlic (Allium sativum)
Creators: name: Zhu, Siyuan
name: Chen, Xiaojun
name: Liu, Xia
name: Zhao, Jian
name: Liu, Touming
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Mental Health
subject: Plant Biology
subject: Virology

description: Table S1 Associated SNPs with three garlic bulb-yield traits (P < 2.5 × 10− 6). Table S2 Correlation between the expression of the associated transcripts and corresponding bulb-yield traits (P < 2.5 × 10− 6). Table S3 Co-expression modules significantly correlated with the bulb-yield traits (P < 0.05). Table S4 Enriched Gene Ontology terms for transcripts co-expressed with long non-coding RNAs (Q value < 0.05). Table S5 Single nucleotide polymorphisms (SNPs) associated with the expression of the 17 transcripts. Table S6 Suggestive loci associated with three garlic bulb-yield traits (P < 5 × 10− 5) (PDF 781 kb)