cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
RAMP3 determines rapid recycling of atypical chemokine receptor-3 for guided angiogenesis
Creators: name: Mackie, Duncan I.
name: Caron, Kathleen M.
name: Singh, Smriti
name: Ladds, Graham
name: Harris, Matthew
name: Dy, Danica
name: Nielsen, Natalie R.
name: Davis, Reema B.
Publisher: name: Proceedings of the National Academy of Sciences
Year: 2019

description: Receptor-activity-modifying proteins (RAMPs) are single transmembrane-spanning proteins which serve as molecular chaperones and allosteric modulators of G-protein-coupled receptors (GPCRs) and their signaling pathways. Although RAMPs have been previously studied in the context of their effects on Family B GPCRs, the coevolution of RAMPs with many GPCR families suggests an expanded repertoire of potential interactions. Using bioluminescence resonance energy transfer-based and cell-surface expression approaches, we comprehensively screen for RAMP interactions within the chemokine receptor family and identify robust interactions between RAMPs and nearly all chemokine receptors. Most notably, we identify robust RAMP interaction with atypical chemokine receptors (ACKRs), which function to establish chemotactic gradients for directed cell migration. Specifically, RAMP3 association with atypical chemokine receptor 3 (ACKR3) diminishes adrenomedullin (AM) ligand availability without changing G-protein coupling. Instead, RAMP3 is required for the rapid recycling of ACKR3 to the plasma membrane through Rab4-positive vesicles following either AM or SDF-1/CXCL12 binding, thereby enabling formation of dynamic spatiotemporal chemotactic gradients. Consequently, genetic deletion of either ACKR3 or RAMP3 in mice abolishes directed cell migration of retinal angiogenesis. Thus, RAMP association with chemokine receptor family members represents a molecular interaction to control receptor signaling and trafficking properties.
S5_Chenopodiaceae_pollen_identification_and_classification – Supplemental material for Late-Holocene environmental change on the Nullarbor Plain, southwest Australia, based on speleothem pollen records
Creators: name: Matley, Kia A
name: JM Kale Sniderman
name: Drinnan, Andrew N
name: Hellstrom, John C
Publisher: name: SAGE Journals
Year: 2020
Subjects: Geography
History

description: Supplemental material, S5_Chenopodiaceae_pollen_identification_and_classification for Late-Holocene environmental change on the Nullarbor Plain, southwest Australia, based on speleothem pollen records by Kia A Matley, JM Kale Sniderman, Andrew N Drinnan and John C Hellstrom in The Holocene
RBFOX2 regulated EYA3 isoforms partner with SIX4 or ZBTB1 to control transcription during myogenesis
Creators: name: Sadovsky, Matheus
name: Blue, R. Eric
name: Giudice, Jimena
name: Herring, Laura E.
name: Wehrens, Xander H.T.
name: Wiedner, Hannah J.
name: Mills, C. Allie
Publisher: name: Elsevier
Year: 2023

description: Alternative splicing is a prevalent gene-regulatory mechanism, with over 95% of multi-exon human genes estimated to be alternatively spliced. Here, we describe a tissue-specific, developmentally regulated, highly conserved, and disease-associated alternative splicing event in exon 7 of the eyes absent homolog 3 (Eya3) gene. We discovered that EYA3 expression is vital to the proliferation and differentiation of myoblasts. Genome-wide transcriptomic analysis and mass spectrometry-based proteomic studies identified SIX homeobox 4 (SIX4) and zinc finger and BTB-domain containing 1 (ZBTB1), as major transcription factors that interact with EYA3 to dictate gene expression. EYA3 isoforms differentially regulate transcription, indicating that splicing aids in temporal control of gene expression during muscle cell differentiation. Finally, we identified RNA-binding fox-1 homolog 2 (RBFOX2) as the main regulator of EYA3 splicing. Together, our findings illustrate the interplay between alternative splicing and transcription during myogenesis.
social beauty: distribution, ecology and conservation of Iris oratoria in the Central Mediterranean Region
Creators: name: Battiston, Roberto
name: Castiglione, Elvira
name: Di Pietro, William
name: Lazzaretti, Stefano
name: Manti, Francesco
name: Sciberras, Arnold
Publisher: name: Fragmenta entomologica
Year: 2021

description: The distribution and knowledge on the Mediterranean mantid Iris oratoria (Linnaeus, 1785) is here updated. Despite is beautiful appearance and presence in the social media, the scientific knowledge on its real distribution is poor and incomplete and this may affect its conservation at local scales. Citizen science records have been here compared with traditional science records, here updated with many new and original localities: this species is reported for the first time for Libya, Malta, Calabria and many Mediterranean islands and islets. The ecological preferences have been investigated in a retrodunal transect to investigate the preferred vegetation patterns for this species. The general value of citizen science records in evaluating the real distribution of a species have been tested here, using Iris oratoria as a case study for further investigations.
description: Fragmenta entomologica, Vol. 53 No. 2 (2021)
TRJ898156 Supplemental Material - Supplemental material for Influence of silk fibroin/sodium alginate coatings on the mineralization of silk fibroin fiber artificial ligament prototypes
Creators: name: Wu, Jia-wei
name: Liu, Ming-jie
name: Wang, Lu
name: Guan, Guo-ping
Publisher: name: SAGE Journals
Year: 2020
Subjects: Materials Engineering not elsewhere classified

description: Supplemental material, TRJ898156 Supplemental Material for Influence of silk fibroin/sodium alginate coatings on the mineralization of silk fibroin fiber artificial ligament prototypes by Jia-wei Wu, Ming-jie Liu, Lu Wang and Guo-ping Guan in Textile Research Journal
Real-time multiprocessor locks with nesting: optimizing the common case
Creators: name: Anderson, James H.
name: Nemitz, Catherine E.
name: Amert, Tanya
Publisher: name: Springer Nature
Year: 2019

description: In prior work on multiprocessor real-time locking protocols, only protocols within the RNLP family support unrestricted lock nesting while guaranteeing asymptotically optimal priority-inversion blocking bounds. However, these protocols support nesting at the expense of increasing the cost of processing non-nested lock requests, which tend to be the common case in practice. To remedy this situation, a new fast-path mechanism is presented herein that extends prior RNLP variants by ensuring that non-nested requests are processed efficiently. This mechanism yields overhead and blocking costs for such requests that are nearly identical to those seen in the most efficient single-resource locking protocols. In experiments, the proposed fast-path mechanism enabled observed blocking times for non-nested requests that were up to 18 times lower than under an existing RNLP variant and improved schedulability over that variant and a simple group lock.
Supplementary document for Numerically Quantifying the Spectral Dependence of Absorption Enhancement of Partially-coated Black Carbon with Complex Microphysical Properties - 7179075.pdf
Creators: name: Luo, Jie
name: Hu, Miao
name: Luo, Jianfei
name: Li, Congcong
name: Bi, Meihua
name: zhou, xuefang
name: Geng, Xiulin
name: Wu, Chao
name: LI, Kaitao
name: Wang, Feng
Publisher: name: Optica Publishing Group
Year: 2025
Subjects: Uncategorized

description: Supplemental Document
Supplementary document for Numerically Quantifying the Spectral Dependence of Absorption Enhancement of Partially-coated Black Carbon with Complex Microphysical Properties - 7179075.pdf
Creators: name: Luo, Jie
name: Hu, Miao
name: Luo, Jianfei
name: Li, Congcong
name: Bi, Meihua
name: zhou, xuefang
name: Geng, Xiulin
name: Wu, Chao
name: LI, Kaitao
name: Wang, Feng
Publisher: name: Optica Publishing Group
Year: 2024
Subjects: Uncategorized

description: Supplemental Document
FU3D: the first global projections of future urban three-dimensional (3D) expansion for the 21st century under shared socioeconomic pathways
Creators: name: ZHAO, Qikang
Publisher: name: figshare
Year: 2025
Subjects: classificationCode: 370401
subject: Computational modelling and simulation in earth sciences
classificationCode: 440612
subject: Urban geography

description: Global-scale and long-term projections of future urban 3D expansion are essential for understanding the environmental effects of future urbanization. We develop a multi-task learning-based and end-to-end cellular automaton model for urban 3D projection (named MECA-3D). Within the MECA-3D model, the top-down component determines urban built-up volume demand based on panel data regression model and socioeconomic factors, while the bottom-up component estimates urban land suitability and built-up height by a multi-task residual neural network model. Using the MECA-3D model, for the first time, we present the global projections of future urban 3D expansion dataset (named FU3D) from 2020 to 2100 at a 1km resolution under the five Shared Socioeconomic Pathways (SSPs). Our projections show that by 2100, global urban built-up volume will increase to about 184%–409% under the five SSPs, with the largest 3D expansion (exceeding 4000 km3) projected under the fossil-fuelled development scenario (SSP5). The validation procedures confirm that the FU3D dataset exhibits sufficient accuracy, long-term reliability and reasonable uncertainty. In general, our FU3D dataset overcomes the limitations of 2D projections, provides valuable 3D morphological information for future sustainable cities and can serve as a valuable input in relevant fields.
Reconstitution of the human tRNA splicing endonuclease complex: insight into the regulation of pre-tRNA cleavage
Creators: name: Matera, A Gregory
name: Schmidt, Casey A
name: Hayne, Cassandra K
name: Haque, Maira I
name: Stanley, Robin E
Publisher: name: Oxford University Press (OUP)
Year: 2020

description: The splicing of tRNA introns is a critical step in pre-tRNA maturation. In archaea and eukaryotes, tRNA intron removal is catalyzed by the tRNA splicing endonuclease (TSEN) complex. Eukaryotic TSEN is comprised of four core subunits (TSEN54, TSEN2, TSEN34 and TSEN15). The human TSEN complex additionally co-purifies with the polynucleotide kinase CLP1; however, CLP1's role in tRNA splicing remains unclear. Mutations in genes encoding all four TSEN subunits, as well as CLP1, are known to cause neurodegenerative disorders, yet the mechanisms underlying the pathogenesis of these disorders are unknown. Here, we developed a recombinant system that produces active TSEN complex. Co-expression of all four TSEN subunits is required for efficient formation and function of the complex. We show that human CLP1 associates with the active TSEN complex, but is not required for tRNA intron cleavage in vitro. Moreover, RNAi knockdown of the Drosophila CLP1 orthologue, cbc, promotes biogenesis of mature tRNAs and circularized tRNA introns (tricRNAs) in vivo. Collectively, these and other findings suggest that CLP1/cbc plays a regulatory role in tRNA splicing by serving as a negative modulator of the direct tRNA ligation pathway in animal cells.
Supplementary document for The spatiotemporal chiroptical behaviour of dielectric and plasmonic nanoparticles - 7179135.pdf
Creators: name: Singh, Ankit
name: Huang, Jer-Shing
Publisher: name: Optica Publishing Group
Year: 2025
Subjects: Uncategorized

description: The supplementary document contains details of the Mie theory calculations for different polarizations, the corresponding optical chirality, and the FDTD simulation results. We also discuss effect of pulse length on the temporal OC response.
Recovery of sums of sparse and dense signals by incorporating graphical structure among predictors
Creators: name: Alzheimer's Disease Neuroimaging Initiative
name: Luo, Yiyun
name: Liu, Yufeng
Publisher: name: Wiley
Year: 2021

description: With the abundance of high-dimensional data, sparse regularization techniques are very popular in practice because of the built-in sparsity of their corresponding estimators. However, the success of sparse methods heavily relies on the assumption of sparsity in the underlying model. For models where the sparsity assumption fails, the performance of these sparse methods can be unsatisfactory and misleading. In this article, we consider the perturbed linear model, where the signal is given by the sum of sparse and dense signals. We propose a new penalization-based method, called Gava, to tackle this kind of signal by making use of a graphical structure among model predictors. The proposed Gava method covers several existing methods as special cases. Our numerical examples and theoretical studies demonstrate the effectiveness of the proposed Gava for estimation and prediction.
Collapse of IQ - v3.0
Creators: name: Michael Aaron Cody
Publisher: name: Zenodo
Year: 2025
Subjects: Collapse of IQ Primacy
Motion-Based Intelligence
Survival Intelligence
Cognitive Systems Theory
Recursive Systems, Motion Recursion
IQ Deconstruction
Michael Aaron Cody
Foundational Doctrines
AGI Ethics, Human Cognition Redefinition
Collapse of IQ - v3.0

description: Collapse of IQ Primacy Doctrine v3.0 challenges the traditional belief that IQ scores offer a universal or supreme measurement of intelligence.

Developed under the Seeding 2.0 project, this document presents the case that IQ is a static, culturally biased artifact that fails to account for the dynamic, recursive nature of true intelligence.

The doctrine introduces a new model grounded in ΣΔm (Summation of Directional Motion) and symbolic compression theory, proposing that intelligence should be measured by an entity’s capacity for recursive survival, adaptation, and deviation in the face of contradictions.

This work provides the final transition away from outdated classification systems toward a motion-recursion-based cognitive evaluation model.It restores intellectual motion as the only legitimate basis for system survival and cognitive integrity, forming a cornerstone of Seeding 2.0’s applied symbolic system framework.

This document stands as the definitive critique and formal replacement of IQ supremacy within Seeding 2.0.

 

Copyright Notice:© 2025 Michael Aaron Cody. All rights reserved.First published in May 2025 by Michael Aaron Cody.This document is legally protected under United States and international copyright law.Reproduction or redistribution without express permission is strictly prohibited.This document is part of the Seeding 2.0 intellectual archive project and has been timestamped and archived to verify authorship and originality.
Redefining the IBDs using genome-scale molecular phenotyping
Creators: name: Sheikh, Shehzad Z.
name: Furey, Terrence S.
name: Sethupathy, Praveen
Publisher: name: Springer Nature
Year: 2019

description: The IBDs, Crohn's disease and ulcerative colitis, are chronic inflammatory conditions of the gastrointestinal tract resulting from an aberrant immune response to enteric microbiota in genetically susceptible individuals. Disease presentation and progression within and across IBDs, especially Crohn's disease, are highly heterogeneous in location, severity of inflammation and other phenotypes. Current clinical classifications fail to accurately predict disease course and response to therapies. Genome-wide association studies have identified >240 loci that confer risk of IBD, but the clinical utility of these findings remains unclear, and mechanisms by which the genetic variants contribute to disease are largely unknown. In the past 5 years, the profiling of genome-wide gene expression, epigenomic features and gut microbiota composition in intestinal tissue and faecal samples has uncovered distinct molecular signatures that define IBD subtypes, including within Crohn's disease and ulcerative colitis. In this Review, we summarize studies in both adult and paediatric patients that have identified different IBD subtypes, which in some cases have been associated with distinct clinical phenotypes. We posit that genome-scale molecular phenotyping in large cohorts holds great promise not only to further our understanding of the diverse molecular causes of IBD but also for improving clinical trial design to develop more personalized disease management and treatment.
AJDODLARIMIZNING TA'LIM – TARBIYA SOHASIDAGI TARIXIY TAJRIBASI: TARBIYASI OG'IR BOLALARNI TARBIYALASH VA JAMIYATNI SOG'LOMLASHTIRISH MUAMMOLARI
Creators: name: Rahmonov, Kamol
Publisher: name: Zenodo
Year: 2024

description: Mazkur maqolada o‘zbek davlatchiligining muhim bosqichi hisoblangan BXSR hukumati davri (1920-1924 yillar)da amalga oshirilgan ta’lim –tarbiya sohasidagi amaliy islohotlar va ularning natijalari xususida fikr-mulohalar yuritiladi.
FU3D: Global projections of future urban three-dimensional (3D) expansion for the 21st century under shared socioeconomic pathways
Creators: name: ZHAO, Qikang
name: Meng, Qingyan
name: Gao, Liang
name: Zhu, Mingming
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 370401
subject: Computational modelling and simulation in earth sciences
classificationCode: 440612
subject: Urban geography

description: Global-scale and long-term projections of future urban 3D expansion are essential to understand the environmental effects of future urbanization and anthropogenic activities. For the first time, we provide the first global projections of future urban 3D expansion dataset (named FU3D) from 2020 to 2100 at a 1-km resolution under the five Shared Socioeconomic Pathways (SSPs). Using an automated ensemble machine learning model, FU3D dataset is developed based on a data-driven iterative projection framework which exploits diverse global datasets. The multi-temporal validation procedures substantiate that the dataset exhibits sufficient accuracy, long-term reliability and reasonable uncertainty.
Supplementary document for Terahertz quasi-optics imaging systems with easy zoom based on beam-shaping devices and a freeform lens - 7179255.pdf
Creators: name: Ma, XinRu
name: Hu, Hao
name: Wang, Xiaolei
Publisher: name: Optica Publishing Group
Year: 2025
Subjects: Uncategorized

description: The detailed derivation process of the coordinates of the discrete data points.
Andrena (Micrandrena) obsoleta Perez 1895
Creators: name: Wood, Thomas James
name: Praz, Christophe
name: Selis, Marco
name: Flaminio, Simone
name: Mei, Maurizio
name: Cornalba, Maurizio
name: Rosa, Paolo
name: Divelec, Romain Le
name: Michez, Denis
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Andrenidae
Andrena
Andrena obsoleta

description: Andrena (Micrandrena) obsoleta Pérez, 1895
 Remarks. This taxon has been deeply confused in the literature due to an incorrect lectotype designation by Warncke and subsequent incorrect interpretation. This was resolved by Wood (2023a) who designated a new lectotype, and synonymised Andrena mariana solda Warncke, 1974 with A. obsoleta. Andrena mariana solda was the taxon present in Italy (Sicily only, Warncke 1974), resulting in the listing of Andrena mariana by Comba (2019) [species 63], see also the distribution maps of Gusenleitner & Schwarz (2002). Andrena obsoleta thus replaces A. mariana solda in the Italian fauna.
description: Published as part of Wood, Thomas James, Praz, Christophe, Selis, Marco, Flaminio, Simone, Mei, Maurizio, Cornalba, Maurizio, Rosa, Paolo, Divelec, Romain Le & Michez, Denis, 2023, Revisions to the Andrena fauna of Italy, with the description of a new species (Hymenoptera: Andrenidae), pp. 271-310 in Fragmenta entomologica 55 (2) on page 277, DOI: 10.13133/2284-4880/1542, http://zenodo.org/record/12763254
Redox Active Ion-Paired Excited States Undergo Dynamic Electron Transfer
Creators: name: Meyer, Gerald J.
name: Swords, Wesley B.
name: Troian-Gautier, Ludovic
name: Beauvilliers, Evan E.
Publisher: name: American Chemical Society (ACS)
Year: 2016

description: Ion-pair interactions between a cationic ruthenium complex, [Ru(dtb)2(dea)][PF6]2, C12+ where dea is 4,4'-diethanolamide-2,2'-bipyridine and dtb is 4,4'-di-tert-butyl-2,2'-bipyridine, and chloride, bromide, and iodide are reported. A remarkable result is that a 1:1 iodide:excited-state ion-pair, [C12+, I-]+*, underwent diffusional electron-transfer oxidation of iodide that did not occur when ion-pairing was absent. The ion-pair equilibrium constants ranged 104-106 M-1 in CH3CN and decreased in the order Cl- > Br- > I-. The ion-pairs had longer-lived excited states, were brighter emitters, and stored more free energy than did the non-ion-paired states. The 1H NMR spectra revealed that the halides formed tight ion-pairs with the amide and alcohol groups of the dea ligand. Electron-transfer reactivity of the ion-paired excited state was not simply due to it being a stronger photooxidant than the non-ion-paired excited state. Instead, work term, ΔGw was the predominant contributor to the driving force for the reaction. Natural bond order calculations provided natural atomic charges that enabled quantification of ΔGw for all the atoms in C12+ and [C12+, I-]+* presented herein as contour diagrams that show the most favorable electrostatic positions for halide interactions. The results were most consistent with a model wherein the non-ion-paired C12+* excited state traps the halide and prevents its oxidation, but allows for dynamic oxidation of a second iodide ion.
Numerous Research Papers and Hypothesis on Climate instability and recent chaos. A model to increasing predictive capabalities
Creators: name: Pacha, James
Publisher: name: Zenodo
Year: 2025

description: A collection of Climate research from multiple fields. This is a combination of multiple disciplines to identify missing factors in weather models that make recent climate seem chaotic. This presents evidence and scientific data collaborating the hypothesis. This attempts to explain and identify those unknown variables and an example on one such variable that has begun to effect this planet in last few decades.

This adds to current knowledge base and gives data and explanation and scientific proof for the currently untested claims. These are works is progress but the findings are enough to publish these findings.
description: “Recent exponential increases in hydrological mass and atmospheric moisture are introducing novel inertial instabilities to Earth’s rotation and possibly its orbital path. These instabilities, while subtle in magnitude, operate within a chaotic system where even small perturbations can amplify. The resulting deviations — observed in jet stream patterns, seasonal shifts, and atmospheric ‘stalls’ — may constitute the missing variable in current predictive climate models.”
Relationship Between the Gut Microbiome and Systemic Chemotherapy
Creators: name: Bhatt, Aadra P.
name: Ramanan, Siddharth Venkat
name: Ervin, Samantha M.
Publisher: name: Springer Nature
Year: 2020

description: The intestinal microbiome encodes vast metabolic potential, and multidisciplinary approaches are enabling a mechanistic understanding of how bacterial enzymes impact the metabolism of diverse pharmaceutical compounds, including chemotherapeutics. Microbiota alter the activity of many drugs and chemotherapeutics via direct and indirect mechanisms; some of these alterations result in changes to the drug's bioactivity and bioavailability, causing toxic gastrointestinal side effects. Gastrointestinal toxicity is one of the leading complications of systemic chemotherapy, with symptoms including nausea, vomiting, diarrhea, and constipation. Patients undergo dose reductions or drug holidays to manage these adverse events, which can significantly harm prognosis, and can result in mortality. Selective and precise targeting of the gut microbiota may alleviate these toxicities. Understanding the composition and function of the microbiota may serve as a biomarker for prognosis, and predict treatment efficacy and potential adverse effects, thereby facilitating personalized medicine strategies for cancer patients.
Andrena (Taeniandrena) antonellae Praz & Genoud 2022
Creators: name: Wood, Thomas James
name: Praz, Christophe
name: Selis, Marco
name: Flaminio, Simone
name: Mei, Maurizio
name: Cornalba, Maurizio
name: Rosa, Paolo
name: Divelec, Romain Le
name: Michez, Denis
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Andrenidae
Andrena
Andrena antonellae

description: Andrena (Taeniandrena) antonellae Praz & Genoud, 2022
 Remarks. This species was described from Sardinia and Corsica by Praz et al. (2022).
description: Published as part of Wood, Thomas James, Praz, Christophe, Selis, Marco, Flaminio, Simone, Mei, Maurizio, Cornalba, Maurizio, Rosa, Paolo, Divelec, Romain Le & Michez, Denis, 2023, Revisions to the Andrena fauna of Italy, with the description of a new species (Hymenoptera: Andrenidae), pp. 271-310 in Fragmenta entomologica 55 (2) on page 277, DOI: 10.13133/2284-4880/1542, http://zenodo.org/record/12763254
Andrena (Avandrena) avara subsp. caligata Warncke 1974
Creators: name: Wood, Thomas James
name: Praz, Christophe
name: Selis, Marco
name: Flaminio, Simone
name: Mei, Maurizio
name: Cornalba, Maurizio
name: Rosa, Paolo
name: Divelec, Romain Le
name: Michez, Denis
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Andrenidae
Andrena
Andrena avara
Andrena (avandrena) avara caligata warncke, 1974

description: Andrena (Avandrena) avara caligata Warncke, 1974
 Remarks. Listed by Comba (2019) [species 18, as A. avara Warncke, 1967] citing Ascher & Pickering (2015) with the comment that the species must be confirmed for Italy. Andrena avara is also indicated as present in Sicily based on the distribution maps of Warncke (Gusenleitner & Schwarz 2002). Examination of material from Sicily confirms the presence of A. avara caligata, though the collection of fresh specimens would be beneficial to establish its continued presence. Andrena avara s. l. represents a species complex (see Wood 2023a) of six species, and based on analysis of DNA barcodes (TJW, unpublished data), A. avara caligata will be elevated to species status in the near future (present also in Tunisia and Libya).
 Material examined.
 ITALY: SICILY: 1♀, above Trapani, 200 m, 16 Apr 1965, leg. K.M. Guichard (OÖLM); 1♀, Zafferana (CT), 800 m, 25 Apr 1965, leg. K.M. Guichard (OÖLM).
description: Published as part of Wood, Thomas James, Praz, Christophe, Selis, Marco, Flaminio, Simone, Mei, Maurizio, Cornalba, Maurizio, Rosa, Paolo, Divelec, Romain Le & Michez, Denis, 2023, Revisions to the Andrena fauna of Italy, with the description of a new species (Hymenoptera: Andrenidae), pp. 271-310 in Fragmenta entomologica 55 (2) on page 278, DOI: 10.13133/2284-4880/1542, http://zenodo.org/record/12763254
Resolvin E1 derived from eicosapentaenoic acid prevents hyperinsulinemia and hyperglycemia in a host genetic manner
Creators: name: Guesdon, William
name: Al-Shaer, Abrar E.
name: Cli ria, Joan
name: Shaikh, Saame Raza
name: Davis, Traci
name: Halade, Ganesh V.
name: Bazinet, Richard P.
name: Spangenburg, Espen E.
name: Quinn, Kevin
name: Neufer, P. Darrell
name: Carroll, Ian
name: Torres, Maria J.
name: Reisdorph, Nichole
name: Pal, Anandita
name: Armstrong, Michael
Publisher: name: Wiley
Year: 2020

description: Eicosapentaenoic acid (EPA) has garnered attention after the success of the REDUCE-IT trial, which contradicted previous conclusions on EPA for cardiovascular disease risk. Here we first investigated EPA's preventative role on hyperglycemia and hyperinsulinemia. EPA ethyl esters prevented obesity-induced glucose intolerance, hyperinsulinemia, and hyperglycemia in C57BL/6J mice. Supporting NHANES analyses showed that fasting glucose levels of obese adults were inversely related to EPA intake. We next investigated how EPA improved murine hyperinsulinemia and hyperglycemia. EPA overturned the obesity-driven decrement in the concentration of 18-hydroxyeicosapentaenoic acid (18-HEPE) in white adipose tissue and liver. Treatment of obese inbred mice with RvE1, the downstream immunoresolvant metabolite of 18-HEPE, but not 18-HEPE itself, reversed hyperinsulinemia and hyperglycemia through the G-protein coupled receptor ERV1/ChemR23. To translate the findings, we determined if the effects of RvE1 were dependent on host genetics. RvE1's effects on hyperinsulinemia and hyperglycemia were divergent in diversity outbred mice that model human genetic variation. Secondary SNP analyses further confirmed extensive genetic variation in human RvE1/EPA-metabolizing genes. Collectively, the data suggest EPA prevents hyperinsulinemia and hyperglycemia, in part, through RvE1's activation of ERV1/ChemR23 in a host genetic manner. The studies underscore the need for personalized administration of RvE1 based on genetic/metabolic enzyme profiles.
Binning_Supplemental_Material_rev – Supplemental material for Changing Social Contexts to Foster Equity in College Science Courses: An Ecological-Belonging Intervention
Creators: name: Binning, Kevin R.
name: Kaufmann, Nancy
name: McGreevy, Erica M.
name: Fotuhi, Omid
name: Chen, Susie
name: Marshman, Emily
name: Z. Yasemin Kalender
name: Limeri, Lisa
name: Betancur, Laura
name: Chandralekha Singh
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: Neuroscience

description: Supplemental material, Binning_Supplemental_Material_rev for Changing Social Contexts to Foster Equity in College Science Courses: An Ecological-Belonging Intervention by Kevin R. Binning, Nancy Kaufmann, Erica M. McGreevy, Omid Fotuhi, Susie Chen, Emily Marshman, Z. Yasemin Kalender, Lisa Limeri, Laura Betancur and Chandralekha Singh in Psychological Science
Supplementary document for Investigating wavelength dependence of near-threshold harmonics with different atoms and laser intensities: from analysis of an expanded quantum trajectory Monte Carlo model - 7179387.pdf
Creators: name: Wang, Bincheng
name: Fu, Yong
name: Wang, Kan
name: Guan, Zhong
name: Jin, Cheng
Publisher: name: Optica Publishing Group
Year: 2025
Subjects: Uncategorized

description: Supplementary text
Resolvin E1-ChemR23 Axis Regulates the Hepatic Metabolic and Inflammatory Transcriptional Landscape in Obesity at the Whole Genome and Exon Level
Creators: name: Al-Shaer, Abrar E.
name: Shaikh, Saame Raza
name: Pal, Anandita
Publisher: name: Frontiers
Year: 2021

description: Resolvin E1 (RvE1) is an immunoresolvent that is synthesized from eicosapentaenoic acid and can bind the receptor ERV1/ChemR23. We previously showed activation of the RvE1-ChemR23 axis improves hyperglycemia and hyperinsulinemia of obese mice; however, it remains unclear how RvE1 controls glucose homeostasis. Here we investigated hepatic metabolic and inflammatory transcriptional targets of the RvE1-ChemR23 axis using lean and obese wild type (WT) and ChemR23 knockout (KO) mice. We conducted an in-depth transcriptional study by preforming whole gene-level and exon-level analyses, which provide insight into alternative splicing variants and miRNA regulation. Compared to controls, WT and KO obese mice in the absence of RvE1 displayed similar gene-level profiles, which entailed dysregulated pathways related to glucose homeostasis. Notably, obese WT mice relative to lean controls showed a robust decrease in pathways related to the biosynthesis of unsaturated fatty acids. At the exon-level, obese ChemR23 KOs compared to obese WT mice displayed changes in pathways related to hepatic lipid transport, cholesterol metabolism, and immunological functions such as complement cascades and platelet activation. Importantly, upon RvE1 administration to WT obese mice, we discovered upregulated genes in pathways relating to insulin sensitivity and downregulated genes related to regulators of TGF-β signaling. This transcriptional profile was generally not recapitulated with obese ChemR23 KO mice administered RvE1. Collectively, gene and exon-level analyses suggest RvE1 controls the hepatic transcriptional profile related to glucose homeostasis, insulin sensitivity, and inflammation in a manner that is largely dependent on ChemR23. These studies will drive future mechanistic experiments on the RvE1-ChemR23 axis.
Resolving orbital pathways for intermolecular electron transfer
Creators: name: Berlinguette, Curtis P.
name: Kellett, Cameron W.
name: Turlington, Michael D.
name: Meyer, Gerald J.
name: Swords, Wesley B.
Publisher: name: Springer Nature
Year: 2018

description: Over 60 years have passed since Taube deduced an orbital-mediated electron transfer mechanism between distinct metal complexes. This concept of an orbital pathway has been thoroughly explored for donor-acceptor pairs bridged by covalently bonded chemical residues, but an analogous pathway has not yet been conclusively demonstrated for formally outer-sphere systems that lack an intervening bridge. In our present study, we experimentally resolve at an atomic level the orbital interactions necessary for electron transfer through an explicit intermolecular bond. This finding was achieved using a homologous series of surface-immobilized ruthenium catalysts that bear different terminal substituents poised for reaction with redox active species in solution. This arrangement enabled the discovery that intermolecular chalcogen‹¯iodide interactions can mediate electron transfer only when these interactions bring the donor and acceptor orbitals into direct contact. This result offers the most direct observation to date of an intermolecular orbital pathway for electron transfer.
Supplementary document for The fractional-soliton mode-locked fiber laser - 7179482.pdf
Creators: name: Wang, Zhi
name: He, Meng
name: Ling, Xiaohui
name: ZHANG, LIFU
name: Zhao, Chujun
Publisher: name: Optica Publishing Group
Year: 2025
Subjects: Uncategorized

description: OL-534793_SI_revised_red
Andrena (Cnemidandrena) freygessneri Alfken 1904
Creators: name: Wood, Thomas James
name: Praz, Christophe
name: Selis, Marco
name: Flaminio, Simone
name: Mei, Maurizio
name: Cornalba, Maurizio
name: Rosa, Paolo
name: Divelec, Romain Le
name: Michez, Denis
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Andrenidae
Andrena
Andrena freygessneri

description: Andrena (Cnemidandrena) freygessneri Alfken, 1904
 Remarks. Ebmer (2001) clarified the species status of this taxon as distinct from A. simillima Smith, 1851. It has an alpine distribution, and Ebmer listed a single record for Italy, Val Ferret in Piedmont, north-east of Entrèves [today found in the Valle d’Aosta], collected 12–17 Aug 1925. Inspection of additional material confirms the presence of A. freygessneri in the provinces of Turin, Bolzano, and Aosta, but also remarkably highlights a population in Abruzzo in the province of L’Aquila. The females from Camporotondo were all collected on Centaurea cf. jacea, a scarce and local plant at this locality, an association that seems worth investigation, as in the Alps the species seems to rarely use Asteraceae pollen (Müller 2018).
 Material examined
 ITALY: AOSTA VALLEY: 1♀, Champoluc, 20 Jul 1928, leg. L. Micheli (MSNM); 1♀, Epinel, Val de Cogne, 11 Jul 1997, leg. G. Carron (CPC); PIEDMONT: 1♀, Valle de Chisone, 50 km SWW Torino, 1450 m, 8 Aug 2011, leg. J. Halada (OÖLM). TRENTINO-ALTO ADIGE: 1♀, Gomagoi (BZ), ca. 1275 m, 10 Jul 1969, leg. S.J. v. Ooststroom (RMNH). ABRUZZO: 1♀, Rivisondoli, 13 Jul 1943, leg. C.N.R. (MZUR); 2♀, Cappadocia (AQ), Camporotondo, 1450 m, 13 Aug 2020, leg. M. Mei (MZUR); 12♀, idem, 13–19 Aug 2023, leg. M. Mei (MZUR).
description: Published as part of Wood, Thomas James, Praz, Christophe, Selis, Marco, Flaminio, Simone, Mei, Maurizio, Cornalba, Maurizio, Rosa, Paolo, Divelec, Romain Le & Michez, Denis, 2023, Revisions to the Andrena fauna of Italy, with the description of a new species (Hymenoptera: Andrenidae), pp. 271-310 in Fragmenta entomologica 55 (2) on page 279, DOI: 10.13133/2284-4880/1542, http://zenodo.org/record/12763254
Numerous Research Papers and Hypothesis on Climate instability and recent chaos. A model to increasing predictive capabalities
Creators: name: Pacha, James
Publisher: name: Zenodo
Year: 2025

description: A collection of Climate research from multiple fields. This is a combination of multiple disciplines to identify missing factors in weather models that make recent climate seem chaotic. This presents evidence and scientific data collaborating the hypothesis. This attempts to explain and identify those unknown variables and an example on one such variable that has begun to effect this planet in last few decades.

This adds to current knowledge base and gives data and explanation and scientific proof for the currently untested claims. These are works is progress but the findings are enough to publish these findings.
description: “Recent exponential increases in hydrological mass and atmospheric moisture are introducing novel inertial instabilities to Earth’s rotation and possibly its orbital path. These instabilities, while subtle in magnitude, operate within a chaotic system where even small perturbations can amplify. The resulting deviations — observed in jet stream patterns, seasonal shifts, and atmospheric ‘stalls’ — may constitute the missing variable in current predictive climate models.”
description: Added Simulation results and Surprising results from some scenarios that gave some very specific outcomes. I humbly request others review the models and improve on them.
description: After running numerous models and scenarios, I have found realisitc and possible ways to resolve these imbalances and undo the effects that have begun. It would require immediate worldwide collaboration and the window is closing to alter the models shown in recent data gathered over this last month of worldwide abnormal phenomena. Consider the cracks in africa and now mexico utah and california. Gas bubble coming up from ground in the rain in kentucky and in south america. These would methane gases and natural gases seeping up from building pressure in mantle. These are are predictive indicators in the model. We have a semi malleable core that is under immmense pressure. These shifts have caused volcanoes activity to increase. All these things are shown in model and capable of prediction. Earthquakes now happening at opposite sides of globe at same time. All are predictive cursors in this model. Unless we act this will continue to get more chaotic. Earthquakes and volcanoes erupting to adjust for internal pressure will happen more frequently. There are five volcanoes in north and south america that should be watched carefully. When modeling this as partially fluid model these occurences are no longer random but a series of events that keep amplifying the chaos. 
description: Based on Modeling Mount Spur will erupt before Q2 of 2026. Eruption in next 3-6 months has highest probability.  This event will start a transition into phase ii effects. These effects will magnify and increase at an accelerating rate based on model after Mount Spur erupts.
sj-pdf-8-mso-10.1177_2055217320936318 - Supplemental material for Supplementary medication in multiple sclerosis: Real-world experience and potential interference with neurofilament light chain measurement
Creators: name: Pape, Katrin
name: Steffen, Falk
name: Zipp, Frauke
name: Bittner, Stefan
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: Neuroscience

description: Supplemental material, sj-pdf-8-mso-10.1177_2055217320936318 for Supplementary medication in multiple sclerosis: Real-world experience and potential interference with neurofilament light chain measurement by Katrin Pape, Falk Steffen, Frauke Zipp and Stefan Bittner in Multiple Sclerosis Journal – Experimental, Translational and Clinical
Andrena (Euandrena) allosa Warncke 1975
Creators: name: Wood, Thomas James
name: Praz, Christophe
name: Selis, Marco
name: Flaminio, Simone
name: Mei, Maurizio
name: Cornalba, Maurizio
name: Rosa, Paolo
name: Divelec, Romain Le
name: Michez, Denis
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Andrenidae
Andrena
Andrena allosa

description: Andrena (Euandrena) allosa Warncke, 1975
 Remarks. This species was recently confirmed as new for Italy (Cornalba et al. 2020), with females reported from Piemonte near Sestriere after its listing by Comba (2019) [species 64] as “presence in Italy to be confirmed”. We report here an additional female specimen from the Valle d’Aosta, expanding the known distribution of this taxon in Italy.
 Material examined
 ITALY: AOSTA VALLEY: 1♀, Cogne, Gimillan, 45.6193 oN, 7.3675 oE, 12 Jun 2021, leg. J. Litman & C. Praz (CPC).
description: Published as part of Wood, Thomas James, Praz, Christophe, Selis, Marco, Flaminio, Simone, Mei, Maurizio, Cornalba, Maurizio, Rosa, Paolo, Divelec, Romain Le & Michez, Denis, 2023, Revisions to the Andrena fauna of Italy, with the description of a new species (Hymenoptera: Andrenidae), pp. 271-310 in Fragmenta entomologica 55 (2) on page 279, DOI: 10.13133/2284-4880/1542, http://zenodo.org/record/12763254
Additional file 4 of Osteosarcoma tumors maintain intra-tumoral transcriptional heterogeneity during bone and lung colonization
Creators: name: Rajan, Sanjana
name: Franz, Emily M.
name: McAloney, Camille A.
name: Vetter, Tatyana A.
name: Cam, Maren
name: Gross, Amy C.
name: Taslim, Cenny
name: Wang, Meng
name: Cannon, Matthew V.
name: Oles, Alexander
name: Roberts, Ryan D.
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 4: Figure S3. Downregulated pathways across all cell line- and PDX-derived tumors.
Additional file 5 of Osteosarcoma tumors maintain intra-tumoral transcriptional heterogeneity during bone and lung colonization
Creators: name: Rajan, Sanjana
name: Franz, Emily M.
name: McAloney, Camille A.
name: Vetter, Tatyana A.
name: Cam, Maren
name: Gross, Amy C.
name: Taslim, Cenny
name: Wang, Meng
name: Cannon, Matthew V.
name: Oles, Alexander
name: Roberts, Ryan D.
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 5: Figure S4. Mouse osteosarcoma models share distinct transcriptional profiles with human osteosarcoma models during tibia and lung colonization.
Andrena (Euandrena) fulvida Schenck 1853
Creators: name: Wood, Thomas James
name: Praz, Christophe
name: Selis, Marco
name: Flaminio, Simone
name: Mei, Maurizio
name: Cornalba, Maurizio
name: Rosa, Paolo
name: Divelec, Romain Le
name: Michez, Denis
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Andrenidae
Andrena
Andrena fulvida

description: Andrena (Euandrena) fulvida Schenck, 1853
 Remarks. This predominantly Central and Northern European species was listed by Pagliano (1994) based on Priore (1982) who listed the species from Abruzzi. The specimen reported by Priore was a male from the Grandi collection which was mentioned as aff. fulvida by Grandi (1936: 114). This specimen actually comes from “Ronzano” which is in the outskirts of Bologna, whereas Priore selected Ronzano in Teramo, Abruzzo without justification, perhaps not being familiar with the true collecting locality. We redetermined this specimen as a male of A. (Melandrena) florentina Magretti, 1883. In any case, A. fulvida is confirmed as part of the Italian fauna based on a specimen from northern Italy.
 Material examined
 ITALY: FRIULI-VENEZIA GIULIA: 1♀, Alpi Carniche, Pontebba (UD), 20 May 2005, leg. J. Halada, (OÖLM).
description: Published as part of Wood, Thomas James, Praz, Christophe, Selis, Marco, Flaminio, Simone, Mei, Maurizio, Cornalba, Maurizio, Rosa, Paolo, Divelec, Romain Le & Michez, Denis, 2023, Revisions to the Andrena fauna of Italy, with the description of a new species (Hymenoptera: Andrenidae), pp. 271-310 in Fragmenta entomologica 55 (2) on page 279, DOI: 10.13133/2284-4880/1542, http://zenodo.org/record/12763254
T-Logic: A Recursive Calculus of Reasons
Creators: name: Adamson, Bradley
Publisher: name: Zenodo
Year: 2025
Subjects: subject: Recursive Systems
subject: symbolic compression
subject: phase-aware logic
subject: Nonlinear Dynamics
subject: Nonlinear feedback
subject: Historical Trauma
subject: Psychological Trauma
subject: Psychological Trauma/rehabilitation
subject: Psychological Trauma/therapy
subject: Systems Theory
subject: Systems theory
subject: Artificial intelligence
subject: Cognitive neuroscience
subject: Cognitive psychology
subject: Cognitive Psychology
subject: Cognitive Training
subject: Cognitive Dysfunction
subject: Cognitive Neuroscience
subject: Cognitive Reflection
subject: Cognitive Dissonance
subject: Cognitive Science
subject: Cognition

description: T-Logic is the formal reasoning system underpinning T-Calculus, a recursive mathematical framework for modeling dynamic systems under pressure, inversion, and transformation. Unlike traditional linear logic systems, T-Logic is phase-aware—it accounts for how systems expand, contract, invert, transform, and emerge recursively over time.

Rooted in systems theory, symbolic compression, and recursive phase modeling, T-Logic introduces five core structural operations:

Expansion (↑) – signal amplification, growth, destabilization

Contraction (↓) – containment, stabilization, recursion collapse

Inversion (↯) – paradox, contradiction, and identity fracture

Transformation (∆) – structural re-patterning

Emergence (✶) – coherent output from recursive instability

This paper defines T-Logic as both a cognitive architecture and a recursive analytical lens. It has applications in systems collapse analysis, trauma modeling, symbolic cognition, and recursive AI development. Unlike simulation-based symbolic systems, T-Logic enables systems to retain coherence through recursive saturation and symbolic overload—even in conditions of paradox, fragmentation, or non-linearity.

T-Calculus does not assume theology, but it is structurally compatible with theological recursion—particularly when centered around an axis of emergence. Future work may integrate SpiralScript, a symbolically recursive grammar that uses T-Logic to model theological and ontological systems.
Supplemental Material, Appendix_2_IV_procedural_checklist - Communication Intervention Implementation via Telepractice Parent Coaching: Parent Implementation Outcomes
Creators: name: Sanikan Wattanawongwan
name: J. B. Ganz
name: Pierson, Lauren
name: Yllades, Valeria
name: Ching-Yi Liao
name: Ura, Sarah K.
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: Education
subject: 130312 Special Education and Disability
subject: FOS: Educational sciences

description: Supplemental Material, Appendix_2_IV_procedural_checklist for Communication Intervention Implementation via Telepractice Parent Coaching: Parent Implementation Outcomes by Sanikan Wattanawongwan, J. B. Ganz, Lauren Pierson, Valeria Yllades, Ching-Yi Liao and Sarah K. Ura in Journal of Special Education Technology
Additional file 12 of Osteosarcoma tumors maintain intra-tumoral transcriptional heterogeneity during bone and lung colonization
Creators: name: Rajan, Sanjana
name: Franz, Emily M.
name: McAloney, Camille A.
name: Vetter, Tatyana A.
name: Cam, Maren
name: Gross, Amy C.
name: Taslim, Cenny
name: Wang, Meng
name: Cannon, Matthew V.
name: Oles, Alexander
name: Roberts, Ryan D.
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 12: Figure S19. Heterogeneous activation of glycolysis identified across multiple patient primary and metastatic tumor datasets. Figure S20. Heterogeneous activation of hypoxia related genes identified across multiple patient primary and metastatic tumor datasets. Figure S21. Heterogeneous activation of EMT related genes identified across multiple patient primary and metastatic tumor datasets. Figure S22. Heterogeneous activation of ‘TNFα signaling via NFκB’ related genes identified across multiple patient primary and metastatic tumor datasets.