cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 4 of TORC1 regulates the transcriptional response to glucose and developmental cycle via the Tap42-Sit4-Rrd1/2 pathway in Saccharomyces cerevisiae
Creators: name: Alfatah, Mohammad
name: Wong, Jin Huei
name: Vidhya Gomathi Krishnan
name: Lee, Yong Cheow
name: Sin, Quan Feng
name: Goh, Corinna Jie Hui
name: Kiat Whye Kong
name: Lee, Wei Ting
name: Lewis, Jacqueline
name: Hoon, Shawn
name: Arumugam, Prakash
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 4: Table S2. Lists of genes in the 10 categories reported in a transcriptomic study of spore germination in yeast.
Hysterothylacium
Creators: name: Arai, Hisao P.
name: Smith, John W.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Nematoda
Secernentea
Ascaridida
Ascarididae
Hysterothylacium

description: ** Hysterothylacium sp.
Synonym: Thynnascaris sp.
Sites: alimentary tract, body cavity, mesenteries
Hosts: Alosa aestivalis (8, 14); Alosa pseudoharengus (8, 14); Ambloplites rupestris (1); Boreogadus saida (6); Catostomus columbianus (4); Coregonus clupeaformis (4); Cottunculus microps (7); Cottus aleuticus (4); Culaea inconstans (11); Fundulus diaphanus (10); Gadus morhua (3, 9); Gasterosteus aculeatus (10); Lepomis macrochirus (10); Lycodes esmarkii (7); Lycodonus mirabilis (7); Macrourus berglax (7); Mallotus villosus (5); Melanogrammus aeglefinus (9); Merluccius bilinearis (9); Morone americana (10); Nezumia bairdii (7); Oncorhynchus mykiss (4); Oncorhynchus nerka (4); Osmerus mordax (12); Pleuronectidae gen. sp. (9); Pollachius virens (9); Prosopium williamsoni (4); Ptychocheilus oregonensis (4); Salvelinus fontinalis (2, 13); Salvelinus malma (4); Scomber scombrus (9); Sebastes sp. (9); Synaphobranchus kaupii (7)
Distribution: Atlantic, British Columbia, Labrador, New Brunswick, Nunavut, Ontario, Quebec
Records: 1. Szuks 1980 (AT); 2. G. A. Black 1981a (QC); 3. Appy & Burt 1982 (AT); 4. Anon. 1984 (BC); 5. Pálsson & Beverley-Burton 1984 (AT); 6. Bradstreet et al. 1986 (NU); 7. Houston & Haedrich 1986 (AT); 8. Landry et al. 1986 (NB); 9. Morrison et al. 1986 (AT); 10. Dechtiar & Christie 1988 (ON); 11. Dechtiar et al. 1988 (ON); 12. Landry & Hare 1990 (AT); 13. Marcogliese & Cone (LB); 14. Landry et al. 1992 (AT)
description: Published as part of Arai, Hisao P. & Smith, John W., 2016, Guide to the Parasites of Fishes of Canada Part V: Nematoda, pp. 1-274 in Zootaxa 4185 (1) on page 146, DOI: 10.11646/zootaxa.4185.1.1, http://zenodo.org/record/165530
Additional file 8 of Spectral phenotyping of embryonic development reveals integrative thermodynamic responses
Creators: name: Tills, Oliver
name: Spicer, John I.
name: Ibbini, Ziad
name: Rundle, Simon D.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Ecology
subject: Developmental Biology
subject: Cancer
subject: Plant Biology
subject: Computational Biology

description: Additional file 8 Time series of total EPT energy for an individual embryo cultured at 20 °C for the duration of its embryonic development. Annotations for manually ascertained developmental events are added A) onset of ciliary driven spinning, B) onset of muscular crawling and C) attachment of foot to the egg capsule.
Raphidascaris Railliet & Henry 1915
Creators: name: Arai, Hisao P.
name: Smith, John W.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Nematoda
Chromadorea
Rhabditida
Raphidascarididae
Raphidascaris

description: Raphidascaris Railliet & Henry, 1915
Synonyms: Hysterothylacium Ward & Magath, 1917; Ichthyascaris Wu, 1949;? Neogoezia Kreis, 1937
Preamble: Raphidascaris acus is the only species of the genus known from Canadian fishes. The life cycle of R. acus was discussed by J. D. Smith (1984b) and Moravec (2013) and involves predatory fishes as final hosts, and various invertebrates and fishes as paratenic or intermediate hosts. Adult and larval stages of R. acus are described below.
Generic diagnosis (after Moravec 2013). Raphidascaridinae. Large nematodes, widest in midbody. Cuticle with distinct striations. Lips well developed, of complex structure. Interlabia rudimentary or absent. Excretory pore slightly behind nerve ring level. Narrow lateral alae may be present. Preventriculus muscular; ventriculus almost spherical; posteriorly directed ventricular appendix present. Intestinal caecum absent. Spicules subequal, arcuate, alate. Caudal papillae numerous. Vulva anterior to mid-length of body. Oviparous. Parasites of marine and freshwater fishes.
description: Published as part of Arai, Hisao P. & Smith, John W., 2016, Guide to the Parasites of Fishes of Canada Part V: Nematoda, pp. 1-274 in Zootaxa 4185 (1) on page 146, DOI: 10.11646/zootaxa.4185.1.1, http://zenodo.org/record/165530
The infrared bands of polycyclic aromatic hydrocarbons in the 1.6-1.7 μm wavelength region
Creators: name: Chen, Tao
name: Luo, Yi
name: Li, Aigen
Publisher: name: arXiv
Year: 2019
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: Context. The 3.3 $μ$m aromatic C-H stretching band of polycyclic aromatic hydrocarbon (PAH) molecules seen in a wide variety of astrophysical regions is often accompanied by a series of weak satellite bands at ~3.4-3.6 $μ$m. One of these sources, IRAS 21282+5050, a planetary nebula, also exhibits a weak band at ~1.68 $μ$m. While the satellite features at ~3.4-3.6 $μ$m are often attributed to the anharmonicities of PAHs, it is not clear whether overtones or combination bands dominate the 1.68 $μ$m feature. Aims. In this work, we examine the anharmonic spectra of eight PAH molecules, including anthracene, tetracene, pentacene, phenanthrene, chrysene, benz[a]anthracene, pyrene, and perylene, to explore the origin of the infrared bands in the 1.6-1.7 $μ$m waveelngth region. Methods. Density Functional Theory (DFT) in combination with the vibrational second-order perturbation theory (VPT2) is utilized for computing the anharmonic spectra of PAHs. To simulate the vibrational excitation process of PAHs, the Wang-Landau random walk technique is employed. Results. All the dominant bands in the 1.6-1.7 $μ$m wavelength range and in the 3.1-3.5 $μ$m C-H stretching region are calculated and tabulated. It is demonstrated that combination bands dominate the 1.6-1.7 $μ$m region, while overtones are rare and weak in this region. We also calculate the intensity ratios of the 3.1-3.5 $μ$m C-H stretching features to the bands in the 1.6-1.7 $μ$m region, $I_{3.1-3.5}/I_{1.6-1.7}$, for both ground and vibrationally excited states. On average, we obtain $\langle I_{3.1-3.5}/I_{1.6-1.7} \rangle$ $\approx$ 12.6 and $\langle I_{3.1-3.5}/I_{1.6-1.7} \rangle$ $\approx$ 17.6 for PAHs at ground states and at vibrationally excited states, respectively.
Semiclassical evaluation of quantum fidelity
Creators: name: Vanicek, Jiri
name: Heller, Eric J.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Quantum Physics (quant-ph)
subject: Chaotic Dynamics (nlin.CD)
subject: FOS: Physical sciences

description: We present a numerically feasible semiclassical (SC) method to evaluate quantum fidelity decay (Loschmidt echo, FD) in a classically chaotic system. It was thought that such evaluation would be intractable, but instead we show that a uniform SC expression not only is tractable but it gives remarkably accurate numerical results for the standard map in both the Fermi-golden-rule and Lyapunov regimes. Because it allows Monte Carlo evaluation, the uniform expression is accurate at times when there are 10^70 semiclassical contributions. Remarkably, it also explicitly contains the ``building blocks'' of analytical theories of recent literature, and thus permits a direct test of the approximations made by other authors in these regimes, rather than an a posteriori comparison with numerical results. We explain in more detail the extended validity of the classical perturbation approximation (CPA) and show that within this approximation, the so-called ``diagonal approximation'' is automatic and does not require ensemble averaging.
description: Added references, small textual improvements
Additional file 1 of Multicentre cohort study of the impact of percutaneous coronary intervention on patients with concurrent cancer and ischaemic heart disease
Creators: name: Nishikawa, Tatsuya
name: Toshitaka Morishima
name: Sumiyo Okawa
name: Fujii, Yuki
name: Otsuka, Tomoyuki
name: Kudo, Toshihiro
name: Fujita, Takeshi
name: Kamada, Risa
name: Yasui, Taku
name: Shioyama, Wataru
name: Oka, Toru
name: Tabuchi, Takahiro
name: Fujita, Masashi
name: Miyashiro, Isao
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology
subject: 60506 Virology

description: Additional file 1. Supplementary tables and figures.
Joint Resummation for Higgs Production
Creators: name: Kulesza, Anna
name: Sterman, George
name: Vogelsang, Werner
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We study the application of the joint resummation formalism to Higgs production via gluon-gluon fusion at the LHC, defining inverse transforms by analytic continuation. We work at next-to-leading logarithmic accuracy. We find that at low Q_T the resummed Higgs Q_T distributions are comparable in the joint and pure-Q_T formalisms, with relatively small influence from threshold enhancement in this range. We find a modest (about ten percent) decrease in the inclusive cross section, relative to pure threshold resummation.
description: 22 pages, LaTeX, 5 figures as eps files
title: Text/Conference Paper
Creators: name: Fitte, Christian
name: Teuteberg, Frank
Publisher: name: Gesellschaft für Informatik e.V.
Year: 2019
Subjects: subject: Pflege
subject: eHealth
subject: defizitäre Krankenhäuser
subject: Digitale Patientenakte
subject: regionales Pflegekompetenzzentrum

description: Während der Bedarf an Pflegeplätzen für ältere Menschen unaufhaltsam wächst, verzeichnen Krankenhäuser, insbesondere in ländlichen Regionen, oftmals finanzielle Verluste aufgrund leerstehender Betten und geringer Fallzahlen. Daher wird in diesem Beitrag ein Konzept vorgestellt, mit dem defizitäre Krankenhäuser in Pflegekompetenzzentren umgewandelt werden können. Zentraler Bestandteil ist eine auf Informations- und Kommunikationstechnologie (IKT) basierende Infrastruktur, die alle Akteure besser miteinander vernetzt, die Arbeit für Pflegekräfte, Ärzte und Apotheken vereinfacht und Angebote für Patienten besser zugänglich macht. Im Rahmen eines Design Science Research-Ansatzes werden Stakeholder und Anforderungen an ein IKTbasiertes Pflegekompetenzzentrum erhoben. Nach einer Konzeptbeschreibung des regionalen Pflegekompetenzzentrums (Reko) und einer Diskussion werden Evaluationsmöglichkeiten aufgezeigt.
MOESM1 of An integrated analysis of public genomic data unveils a possible functional mechanism of psoriasis risk via a long-range ERRFI1 enhancer
Creators: name: Kubota, Naoto
name: Mikita Suyama
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Developmental Biology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Computational Biology

description: Additional file 1: Figure S1 A heat map of the normalized effect size of GTEx eQTLs for functional variants in exons and splice sites. Figure S2 rs2549797 is a candidate functional variant located on a splice site of the ERAP2 gene. Figure S3 rs60542959 is a deleterious variant that causes a start lost mutation in the COQ10A gene. Figure S4 H3K27ac ChIP-seq peaks of immune cells are enriched among psoriasis-associated promoter regions. Figure S5 A heat map of the normalized effect size of GTEx eQTLs for functional variants in promoters and enhancers. Figure S6 A Table of bindings of transcription factors (TFs) to functional variants in promoters and enhancers in various cells. Figure S7 The rs3132089 is a candidate functional variant located in the HCP5 gene promoter. Figure S8 Hi-C contact maps for the liver and IMR90 cell line in the 1p36 region. Figure S9 An overview of the 1p36.23 region that contains the ERRFI1 gene and rs72635708. Figure S10 The effect of rs72635708 on AP-1 complex binding.
MOESM5 of Prostanoid receptor genes confer poor prognosis in head and neck squamous cell carcinoma via epigenetic inactivation
Creators: name: Misawa, Kiyoshi
name: Mima, Masato
name: Yamada Satoshi
name: Imai, Atsushi
name: Mochizuki, Daiki
name: Ishikawa, Ryuji
name: Kita, Junya
name: Yamaguchi, Yuki
name: Endo, Shiori
name: Misawa, Yuki
name: Mineta, Hiroyuki
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Additional file 5: Fig. S2. Receiver operating characteristic (ROC) curves for the methylation markers in cancer tissue versus adjacent normal mucosal tissue. Based on the ROC curve analysis, Area Under Curves (AUCs) are 0.6767 for PTGDR1 (A), 0.6265 for PTGDR2 (B), 0.6574 for PTGER1 (C), 0.6154 for PTGER2 (D), 0.4784 for PTGER3 (E), 0.5405 for PTGER4 (F), 0.6289 for PTGFR (G), 0.6736 for PTGIR (H) and 0.6605 for TBXA2R (I).
Photo-enhanced excitonic correlations in a Mott insulator with nonlocal interactions
Creators: name: Bittner, Nikolaj
name: Golez, Denis
name: Eckstein, Martin
name: Werner, Philipp
Publisher: name: arXiv
Year: 2019
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We investigate the effect of nonlocal interactions on the photo-doped Mott insulating state of the two-dimensional Hubbard model using a nonequilibrium generalization of the dynamical cluster approximation. In particular, we compare the situation where the excitonic states are lying within the continuum of doublon-holon excitations to a set-up where the excitons appear within the Mott gap. In the first case, the creation of nearest-neighbor doublon-holon pairs by excitations across the Mott gap results in enhanced excitonic correlations, but these excitons quickly decay into uncorrelated doublons and holons. In the second case, photo-excitation results in long-lived excitonic states. While in a low-temperature equilibrium state, excitonic features are usually not evident in single-particle observables such as the photoemission spectrum, we show that the photo-excited nonequilibrium system can exhibit in-gap states associated with the excitons. The comparison with exact-diagonalization results for small clusters allows us to identify the signatures of the excitons in the photo-emission spectrum.
Effects of correlated turbulent velocity fields on the formation of maser lines
Creators: name: Boeger, R.
name: Kegel, W. H.
name: Hegmann, M.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The microturbulent approximation of turbulent motions is widely used in radiative transfer calculations. Mainly motivated by its simple computational application it is probably in many cases an oversimplified treatment of the dynamical processes involved. This aspect is in particular important in the analysis of maser lines, since the strong amplification of radiation leads to a sensitive dependence of the radiation field on the overall velocity structure. To demonstrate the influence of large scale motions on the formation of maser lines we present a simple stochastic model which takes velocity correlations into account. For a quantitative analysis of correlation effects, we generate in a Monte Carlo simulation individual realizations of a turbulent velocity field along a line of sight. Depending on the size of the velocity correlation length we find huge deviations between the resulting random profiles in respect of line shape, intensity and position of single spectral components. Finally, we simulate the emission of extended maser sources. A qualitative comparison with observed masers associated with star forming regions shows that our model can reproduce the observed general spectral characteristics. We also investigate shortly, how the spectra are effected when a systematic velocity field (simulating expansion) is superposed on the fluctuations. Our results convincingly demonstrate that hydrodynamical motions are of great importance for the understanding of cosmic masers.
description: Accepted for publication in A&A. 8 pages, 8 figures
title: Text/Conference Paper
Creators: name: Krüger, Jacob
name: Wiemann, Jens
name: Fenske, Wolfram
name: Saake, Gunter
name: Leich, Thomas
Publisher: name: Gesellschaft für Informatik e.V.
Year: 2019
Subjects: subject: Familiarity
subject: forgetting
subject: empirical study
subject: maintenance
subject: program comprehension

description: In this extended abstract, we summarize our paper “Do You Remember This Source Code?”, published at the International Conference on Software Engineering 2018 [Kr18]. We discuss implications of our results on forgetting in the context of program comprehension, providing a more contextual perspective on our results compared to the original paper and a previous abstract [Kr19].
Additional file 5 of TORC1 regulates the transcriptional response to glucose and developmental cycle via the Tap42-Sit4-Rrd1/2 pathway in Saccharomyces cerevisiae
Creators: name: Alfatah, Mohammad
name: Wong, Jin Huei
name: Vidhya Gomathi Krishnan
name: Lee, Yong Cheow
name: Sin, Quan Feng
name: Goh, Corinna Jie Hui
name: Kiat Whye Kong
name: Lee, Wei Ting
name: Lewis, Jacqueline
name: Hoon, Shawn
name: Arumugam, Prakash
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 5: Figure S13. Comparative gene expression analysis of specific gene modules during spore germination in the presence and absence of rapamycin. Expression of genes in 10 specific modules described in an earlier transcriptomic study of spore germination (Additional file 3: Table 2) was examined in our RNA-Seq data. The transcripts levels of genes in 10 modules in spores incubated in either YPD + DMSO or YPD + rapamycin, for 0, 0.17, 0.5, 1, 2, 4 and 6 h was compared with the corresponding level in ungerminated spores. Blue and red bars indicate the fold-change values for ‘YPD + DMSO’ and ‘YPD + rapamycin’ cultures respectively. Comparison of gene expression between ‘spores’ with ‘spores + YPD’ or ‘spores + YPD + rapamycin’ are shown in Additional file 6: Table S3 and Additional file 7: Table S4 respectively.
title: Text/Conference Paper
Creators: name: Schmidt, Andreas
name: Reif, Stefan
name: Pereira, Pablo Gil
name: Hönig, Timo
name: Herfet, Thorsten
name: Schröder-Preikschat, Wolfgang
Publisher: name: Gesellschaft für Informatik e.V.
Year: 2019
Subjects: subject: Cross-Layer Optimization
subject: Pacing
subject: Age of Information
subject: Low Latency
subject: Transport Protocols

description: For dynamic systems, it is mandatory that all components operate on predictably “fresh” data. This requirement constitutes a challenge, in particular, when Internet-based or wireless communication is involved. We propose X-Pace, an approach based on cross-layer pacing, to achieve predictably low communication latency in the presence of varying network channel properties and node performance.
MOESM4 of Prostanoid receptor genes confer poor prognosis in head and neck squamous cell carcinoma via epigenetic inactivation
Creators: name: Misawa, Kiyoshi
name: Mima, Masato
name: Yamada Satoshi
name: Imai, Atsushi
name: Mochizuki, Daiki
name: Ishikawa, Ryuji
name: Kita, Junya
name: Yamaguchi, Yuki
name: Endo, Shiori
name: Misawa, Yuki
name: Mineta, Hiroyuki
Publisher: name: figshare
Year: 2020
Subjects: subject: Space Science
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 4: Table S3. Results of the ROC curve analysis, the sensitivity, specificity, and cutoff value.
Fast, scalable, and interactive software for Landau-de Gennes numerical modeling of nematic topological defects
Creators: name: Sussman, Daniel M.
name: Beller, Daniel A.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: Numerical modeling of nematic liquid crystals using the tensorial Landau-de Gennes (LdG) theory provides detailed insights into the structure and energetics of the enormous variety of possible topological defect configurations that may arise when the liquid crystal is in contact with colloidal inclusions or structured boundaries. However, these methods can be computationally expensive, making it challenging to predict (meta)stable configurations involving several colloidal particles, and they are often restricted to system sizes well below the experimental scale. Here we present an open-source software package that exploits the embarrassingly parallel structure of the lattice discretization of the LdG approach. Our implementation, combining CUDA/C++ and OpenMPI, allows users to accelerate simulations using both CPU and GPU resources in either single- or multiple-core configurations. We make use of an efficient minimization algorithm, the Fast Inertial Relaxation Engine (FIRE) method, that is well-suited to large-scale parallelization, requiring little additional memory or computational cost while offering performance competitive with other commonly used methods. In multi-core operation we are able to scale simulations up to supra-micron length scales of experimental relevance, and in single-core operation the simulation package includes a user-friendly GUI environment for rapid prototyping of interfacial features and the multifarious defect states they can promote. To demonstrate this software package, we examine in detail the competition between curvilinear disclinations and point-like hedgehog defects as size scale, material properties, and geometric features are varied. We also study the effects of an interface patterned with an array of topological point-defects.
description: 16 pages, 6 figures, 1 youtube link. The full catastrophe
On the origin of brown dwarfs and free-floating planetary mass objects
Creators: name: Kroupa, Pavel
name: Bouvier, Jerome
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: (abridged) Sub-stellar mass objects have fundamentally different binary properties than stars implying that they cannot have the same formation history. They are rather unfinished stars having either been ejected by their siblings from compact groups of accreting hydrostatic cores, or having lost their accretion envelopes through photo-evaporation by nearby O stars or through hyperbolic encounters with other accreting cores in their birth clusters. All three scenarios are studied with a view to understanding the observed smaller number of brown dwarfs (BDs) per star in the Taurus star-forming region as opposed to the larger number of BDs per star seen in the Orion Nebula cluster. It is found that both environments can produce the same number of ejected BDs per star if the true production rate is about one BD per four stars and the ejection velocity is about 2 km/s. This production rate is much lower than the number of BDs per star inferred for the Galactic field. Adding photo-evaporated and collisional BDs cannot reconcile this difference. The only possible solution would be to postulate that tranquil star-formation such as in Taurus is producing about one BD per star with ejection velocities of about 3 km/s, while Orion-Nebula-type clusters produce at most about one BD per three stars. Unless the Galactic-field census of BDs has been overestimated, this then would imply that low-mass star-forming regions may be the primary source of the field BDs, rather than rich clusters.
description: MNRAS, accepted, 16 pages, 3 figures
Demonstrating a Continuous Set of Two-qubit Gates for Near-term Quantum Algorithms
Creators: name: Foxen, B.
name: Neill, C.
name: Dunsworth, A.
name: Roushan, P.
name: Chiaro, B.
name: Megrant, A.
name: Kelly, J.
name: Chen, Zijun
name: Satzinger, K.
name: Barends, R.
name: Arute, F.
name: Arya, K.
name: Babbush, R.
name: Bacon, D.
name: Bardin, J. C.
name: Boixo, S.
name: Buell, D.
name: Burkett, B.
name: Chen, Yu
name: Collins, R.
name: Farhi, E.
name: Fowler, A.
name: Gidney, C.
name: Giustina, M.
name: Graff, R.
name: Harrigan, M.
name: Huang, T.
name: Isakov, S. V.
name: Jeffrey, E.
name: Jiang, Z.
name: Kafri, D.
name: Kechedzhi, K.
name: Klimov, P.
name: Korotkov, A.
name: Kostritsa, F.
name: Landhuis, D.
name: Lucero, E.
name: McClean, J.
name: McEwen, M.
name: Mi, X.
name: Mohseni, M.
name: Mutus, J. Y.
name: Naaman, O.
name: Neeley, M.
name: Niu, M.
name: Petukhov, A.
name: Quintana, C.
name: Rubin, N.
name: Sank, D.
name: Smelyanskiy, V.
name: Vainsencher, A.
name: White, T. C.
name: Yao, Z.
name: Yeh, P.
name: Zalcman, A.
name: Neven, H.
name: Martinis, John M.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Quantum algorithms offer a dramatic speedup for computational problems in machine learning, material science, and chemistry. However, any near-term realizations of these algorithms will need to be heavily optimized to fit within the finite resources offered by existing noisy quantum hardware. Here, taking advantage of the strong adjustable coupling of gmon qubits, we demonstrate a continuous two-qubit gate set that can provide a 3x reduction in circuit depth as compared to a standard decomposition. We implement two gate families: an iSWAP-like gate to attain an arbitrary swap angle, $θ$, and a CPHASE gate that generates an arbitrary conditional phase, $ϕ$. Using one of each of these gates, we can perform an arbitrary two-qubit gate within the excitation-preserving subspace allowing for a complete implementation of the so-called Fermionic Simulation, or fSim, gate set. We benchmark the fidelity of the iSWAP-like and CPHASE gate families as well as 525 other fSim gates spread evenly across the entire fSim($θ$, $ϕ$) parameter space achieving purity-limited average two-qubit Pauli error of $3.8 \times 10^{-3}$ per fSim gate.
description: 20 pages, 17 figures
Quantum Dissipation due to the Interaction with Chaos
Creators: name: Cohen, Doron
name: Kottos, Tsampikos
Publisher: name: arXiv
Year: 2003
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Chaotic Dynamics (nlin.CD)
subject: Nuclear Theory (nucl-th)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We discuss the possibility of having "quantum dissipation" due to the interaction with chaotic degrees of freedom. We define the conditions that should be satisfied in order to have a dissipative effect similar to the one due to an interaction with a (many body) bath. We also compare with the case where the environment is modeled by a random matrix model. In case of interaction with "chaos" we observe a regime where the relaxation process is non-universal, and reflects the underlaying semiclassical dynamics. As an example we consider a two level system (spin) that interacts with a two dimensional anharmonic oscillator.
description: 5 pages, 1 figure, final improved version, to be published as Phys Rev. E Rapid Communication
title: Text/Conference Paper
Creators: name: Beedkar, Kaustubh
name: Gemulla, Rainer
name: Renz-Wieland, Alexander
Publisher: name: Gesellschaft für Informatik e.V.
Year: 2019
Subjects: subject: Data mining
subject: Frequent sequence mining
subject: Subsequence constraints
subject: Pattern expressions
subject: Distributed sequence mining

description: DESQ is a general-purpose framework for declarative and scalable frequent sequence mining. Applications express their specific sequence mining tasks using a simple yet powerful powerful pattern expression language, and DESQ’s computation engine automatically executes the mining task in an efficient and scalable way. In this paper, we give a brief overview of DESQ and its components.
Additional file 1 of Phenology-mediated effects of phenotype on the probability of social polygyny and its fitness consequences in a migratory passerine
Creators: name: Canal, David
name: Schlicht, Lotte
name: Santoro, Simone
name: Camacho, Carlos
name: Martínez-Padilla, Jesús
name: Potti, Jaime
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Ecology

description: Additional file 1. Complementary fitness analyses.
Raphidascaris
Creators: name: Arai, Hisao P.
name: Smith, John W.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Nematoda
Chromadorea
Rhabditida
Raphidascarididae
Raphidascaris

description: ** Raphidascaris sp.
Sites: alimentary tract, liver, musculature
Hosts: Acipenser fulvescens (26, 28); Coregonus artedi (14, 15, 17); Coregonus clupeaformis (3, 14, 16, 17, 20, 21, 23); Coregonus nasus (27); Esox lucius (2, 3, 5, 8, 12, 14, 19, 20, 21, 23); Morone chrysops (22); Perca flavescens (1, 3, 15, 20, 23); Pungitius pungitius (12); Salmo salar (6, 7, 9, 10, 11, 13, 18); Salvelinus fontinalis (16, 24, 25); Salvelinus namaycush (12, 16); Sander vitreus (3, 4)
Distribution: Alberta, Hudson Bay Drainage, Labrador, Manitoba, New Brunswick, Northwest Territories, Ontario, Quebec, Saskatchewan
Records: 1. Richardson 1937 (QC); 2. McLeod 1943 (MB); 3. McLeod 1944 (MB); 4. Stewart-Hay 1951b (MB); 5. Stewart-Hay 1953c (MB); 6. Pippy 1967 (LB); 7. Pippy 1969 (AT); 8. Threlfall & Hanek 1970b (LB); 9. Hare 1975 (NB); 10. Hare & Burt 1975a (NB); 11. Hare & Burt 1975b (NB); 12. Leong 1975 (AB); 13. Hare & Burt 1976 (NB); 14. Watson 1977 (MB); 15. Anthony 1978b (ON); 16. Chinniah & Threlfall 1978 (LB); 17. Watson & Dick 1979 (MB); 18. Pippy 1980 (NB); 19. Watson & Dick 1980 (MB); 20. Samuel 1981 (AB); 21. McAllister & Mudry 1983 (AB); 22. Anthony 1984 (ON); 23. Samuel 1985 (AB); 24. Frimeth 1987a (NB); 25. Frimeth 1987b (NB); 26. Choudhury et al. 1990 (MB); 27. Choudhury & Dick 1997 (NT); 28. Choudhury & Dick 1998 (HBD, MB)
description: Published as part of Arai, Hisao P. & Smith, John W., 2016, Guide to the Parasites of Fishes of Canada Part V: Nematoda, pp. 1-274 in Zootaxa 4185 (1) on page 150, DOI: 10.11646/zootaxa.4185.1.1, http://zenodo.org/record/165530
Symmetric Mass Matrix with Two Zeros in SUSY SO(10) GUT, Lepton Flavor Violations and Leptogenesis
Creators: name: Bando, Masako
name: Kaneko, Satoru
name: Obara, Midori
name: Tanimoto, Morimitu
Publisher: name: arXiv
Year: 2004
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We study the symmetric 2-zero texture of the neutrino mass matrix, which is obtained from the symmetric Dirac neutrino mass matrix with 2-zeros and right-handed Majorana neutrino mass matrix with the general form via the see-saw mechanism, for the SUSY SO(10) GUT model including the Pati-Salam symmetry. We show that the only one texture in our model, having degenerate mass spectrum for the 1st and 2nd generation of right-handed Majorana neutrino, can simultaneously explain the current neutrino experimental data, lepton flavor violating processes and baryon asymmetry of the Universe. Within such a framework, the predicted values of the light and heavy Majorana neutrino masses, together with $|U_{e3}|$, $J_{\rm CP}$ and $|< M_{ee} >|$, are almost uniquely determined.
description: 36 pages, latex, 17 figures. Preprint version contains "low resolution" figures to reduce the size of overall postscript file. Please contact authors to obtain the high resolution version. Some references added. Section 1 and subsection 2.1 are revised, conclusions are not changed, typos corrected
Characterizing network topology using first-passage analysis
Creators: name: Chaves, M. S.
name: Mattos, T. G.
name: Atman, A. P. F.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Physics and Society (physics.soc-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Understanding the topological characteristics of complex networks and how they affect navigability is one of the most important goals in science today, as it plays a central role in various economic, biological, ecological and social systems. Here, we apply First Passage analysis tools to investigate the properties and characteristics of random walkers in networks with different topology. Starting with the simplest two-dimensional square lattice, we modify its topology incrementally by randomly reconnecting links between sites. We characterize these networks by First Passage Time from a significant number of random walkers without interaction, varying the departure and arrival locations. We also apply the concept of First Passage Simultaneity, which measures the likelihood of two walkers reaching their destination together. These measures, together with the site occupancy statistics during the processes, allowed to differentiate the studied networks, especially the random networks from the scale-free networks, by their navigability. We also show that small world features can also be highlighted with the proposed technique.
description: 17 pages and 9 figures
Polya's inequalities, global uniform integrability and the size of plurisubharmonic lemniscates
Creators: name: Benelkourchi, S.
name: Jennane, B.
name: Zeriahi, A.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Complex Variables (math.CV)
subject: FOS: Mathematics
subject: 32U05, 32U15, 32U20, 32W20

description: First we prove a new inequality comparing uniformly the relative volume of a Borel subset with respect to any given complex euclidean ball $\B \sub \C^n$ with its relative logarithmic capacity in $\C^n$ with respect to the same ball $\B$. An analoguous comparison inequality for Borel subsets of euclidean balls of any generic real subspace of $\C^n$ is also proved. Then we give several interesting applications of these inequalities. First we obtain sharp uniform estimates on the relative size of \psh lemniscates associated to the Lelong class of \psh functions of logarithmic singularities at infinity on $\C^n$ as well as the Cegrell class of \psh functions of bounded Monge-Ampère mass on a hyperconvex domain $\W \Sub \C^n.$ Then we also deduce new results on the global behaviour of both the Lelong class and the Cegrell class of \psh functions.
description: 25 pages
Paramacroxiphus uniformis Ingrisch 2008, sp. n.
Creators: name: Ingrisch, Sigfrid
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Orthoptera
Tettigoniidae
Paramacroxiphus
Paramacroxiphus uniformis

description: Paramacroxiphus uniformis sp. n.
Figs. 72–73, 95
Holotype (female): Indonesia: Papua, Z.-W. New Guinea, Boven–Digoel, 160km stroomop van Tanah Merah, 1 August– 30.ix.1929, W.G.N. v.d. Sleen. Holotype in Instituut voor Taxonomische Zoologie, Zoologisch Museum Amsterdam, Netherlands.
Specimen Examined (Paratype): 1 female, Indonesia: Papua, Z. New Guinea, 1912–13, Kloofbivak, 13.xi.1912, G. Versteeg (ZMAN).
 Description. Fastigium verticis: eye length = 1.5: 2.1 mm; projecting 0.8 mm in front of eyes. Femora with the following number of spines on ventral margins: profemur 7–8 external, 6–7 internal; mesofemur 7 external, 3–4 internal; postfemur 14–16 external, 15–17 internal.
Female. Subgenital plate transverse, divided in midline by a narrow hyaline carina; resulting plates short but laterally prolonged and strongly curved dorsad, lateral surface sinuate; apex with a projecting, obtuse-triangular, membranous lobe (somewhat roof-shaped in the second female due to deformation during desiccation); transition between sclerotised plates and membranous apical lobe not well marked (Figs. 72–73).
 Coloration. Ochre. Frons concolorous, clypeus and dorsal part of labrum yellow; mandibles dark brown. Pronotum and legs marmorated. Tegmen ochre with little conspicuous brown spots. Postfemur with two medium brown spots in dorsal area and also hind knees medium brown. Female subgenital plate dark brown, midline and apical lobe pale. Ovipositor medium brown.
 Measurements of female: body 28–32; pronotum 10.0–10.7; tegmen 46–47; postfemur 26.0–27.5; ovipositor 48–52; -height 3.0– 3.2 mm.
 Diagnosis. P. uniformis is probably close to P. maculatus. The female subgenital plates are similar. However, the membranous apical area forms only a simply rounded apex instead of being faintly bilobate; the basal sclerites are without the strong lateral groove that is present in P. maculatus.
 Etymology. The species is named for the uniform coloration.
description: Published as part of Ingrisch, Sigfrid, 2008, Revision of the genera Paramacroxiphus C. Willemse 1961 and Pseudomacroxiphus C. Willemse 1961 (Orthoptera: Tettigoniidae: Conocephalinae: Agraeciini), pp. 1-34 in Zootaxa 1755 (1) on page 28, DOI: 10.11646/zootaxa.1755.1.1, http://zenodo.org/record/5123630
Diffusion in supersonic, turbulent, compressible flows
Creators: name: Klessen, Ralf S.
name: Lin, Doug N. C.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: Chaotic Dynamics (nlin.CD)
subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: We investigate diffusion in supersonic, turbulent, compressible flows. Supersonic turbulence can be characterized as network of interacting shocks. We consider flows with different rms Mach numbers and where energy necessary to maintain dynamical equilibrium is inserted at different spatial scales. We find that turbulent transport exhibits super-diffusive behavior due to induced bulk motions. In a comoving reference frame, however, diffusion behaves normal and can be described by mixing length theory extended into the supersonic regime.
description: 11 pages, incl. 5 figures, accepted for publication in Physical Review E (a high-resolution version is available at http://www.aip.de./~ralf/Publications/p21.abstract.html)
Imperfect Recollisions in High-Harmonic Generation in Solids
Creators: name: Yue, Lun
name: Gaarde, Mette
Publisher: name: arXiv
Year: 2020
Subjects: subject: Atomic Physics (physics.atom-ph)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We theoretically investigate high-harmonic generation in hexagonal boron nitride with linearly polarized laser pulses. We show that imperfect recollisions between electron-hole pairs in the crystal give rise to an electron-hole-pair polarization energy that leads to a double-peak structure in the subcycle emission profiles. An extended recollision model (ERM) is developed that allows for such imperfect recollisions, as well as effects related to Berry connections, Berry curvatures, and transition-dipole phases. The ERM illuminates the distinct spectrotemporal characteristics of harmonics emitted parallel and perpendicularly to the laser polarization direction. Imperfect recollisions are a general phenomenon and a manifestation of the spatially delocalized nature of the real-space wave packet, they arise naturally in systems with large Berry curvatures, or in any system driven by elliptically polarized light.
Additional file 2 of Phenology-mediated effects of phenotype on the probability of social polygyny and its fitness consequences in a migratory passerine
Creators: name: Canal, David
name: Schlicht, Lotte
name: Santoro, Simone
name: Camacho, Carlos
name: Martínez-Padilla, Jesús
name: Potti, Jaime
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Ecology

description: Additional file 2. Simulation analyses.
title: Text/Conference Paper
Creators: name: Buchmann, Erik
name: Plate, Franziska
Publisher: name: Gesellschaft für Informatik e.V.
Year: 2019
Subjects: subject: IT-Sicherheit
subject: Smart City
subject: Multimodale Mobilität

description: Im Zuge einer Mobilitätswende werden Konzepte der multimodalen Mobilität immer wichtiger. Multimodale Mobilität bedeutet, dass dem Nutzer in Abhängigkeit von persönlichen und externen Faktoren eine Kombination aus Reisemitteln angeboten, gebucht und abgerechnet wird, die sein Mobilitätsbedürfnis erfüllen. Zu den persönlichen Faktoren zählen Präferenzen wie Preis, Komfort oder Reisezeit, zu den externen die Verfügbarkeit von Verkehrsmitteln, Staus oder Umweltparameter. Dies erfordert eine komplexe Vernetzung von Verkehrsmitteln, Umweltsensoren, Mobilitäts- und Abrechnungsdienstleistern, intelligenten Verfahren zur Stau- und Klimavorhersage, sowie eine Echtzeitüberwachung der Nutzerposition. Der IT-Sicherheit kommt deswegen eine entscheidende Bedeutung zu. Wir untersuchen, inwieweit sich die multimodale Mobilität für den Nahverkehr in einem typischen Smart City-Szenario technisch absichern lässt. In Anlehnung an den IT-Grundschutz modellieren wir die Datenflüsse, die für die Umsetzung der multimodalen Mobilität erforderlich sind. Wir untersuchen, inwiefern die derzeit verfügbaren Konzepte der IT-Sicherheit für diesen Anwendungsfall geeignet sind, und führen eine Risikoanalyse durch. Unsere Arbeit zeigt, dass bei einer konsequenten Realisierung eines Sicherheitskonzepts das größte Risiko durch Fehlbedienung oder Fehlkonfiguration des Smartphones des Nutzers entsteht.
MOESM2 of Prostanoid receptor genes confer poor prognosis in head and neck squamous cell carcinoma via epigenetic inactivation
Creators: name: Misawa, Kiyoshi
name: Mima, Masato
name: Yamada Satoshi
name: Imai, Atsushi
name: Mochizuki, Daiki
name: Ishikawa, Ryuji
name: Kita, Junya
name: Yamaguchi, Yuki
name: Endo, Shiori
name: Misawa, Yuki
name: Mineta, Hiroyuki
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2: Table S2. Q-MSP primer list.
title: Text/Conference Paper
Creators: name: Wilhelm, Sebastian
name: Jakob, Dietmar
name: Dietmeier, Melanie
Publisher: name: Gesellschaft für Informatik e.V.
Year: 2019
Subjects: subject: Digitization
subject: Media literacy
subject: Senior education

description: The use of digital solutions to support rural areas, and in particular elderly people, is the goal of the ‘Digitales Dorf’ and ‘BLADL’ research projects. This work assessed seniors’ media literacy in two model communities; with the result that fear of fraudster and lack of knowledge are the most common causes that prevent elderly people from using digital technologies. Based on these evaluation results, a combined training offer of tutorial and digital consultation hour was developed and evaluated.
Statistic-Based Security Analysis of Ring Oscillator PUFs
Creators: name: Wilde, Florian
name: Hiller, Matthias
name: Pehl, Michael
Publisher: name: arXiv
Year: 2019
Subjects: subject: Signal Processing (eess.SP)
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: Ring oscillators (ROs) are a robust way to implement a physical unclonable function (PUF) into ASICs or FPGAs, but claims of predictability arose recently. We describe why this likely results from not using adjacent ROs for pairwise comparison because of spatial patterns in mean frequency and correlation coefficients found by principal component analysis. We show that the covariance is too small for our approach to estimate bits if adjacent ROs are compared. Our assumption of normality for the inter-device distribution passes an Anderson-Darling test and we outline that devices with proximate serial numbers are not more similar than other devices.
description: Original publication at 2014 International Symposium on Integrated Circuits (ISIC). Was 4 pages, now 5 pages due to different line breaking of arXiv TeX system; source code is identical
Additional file 3 of Phenology-mediated effects of phenotype on the probability of social polygyny and its fitness consequences in a migratory passerine
Creators: name: Canal, David
name: Schlicht, Lotte
name: Santoro, Simone
name: Camacho, Carlos
name: Martínez-Padilla, Jesús
name: Potti, Jaime
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Ecology

description: Additional file 3. Model selection.
A deep Chandra observation of the Perseus cluster: shocks and ripples
Creators: name: Fabian, A. C.
name: Sanders, J. S.
name: Allen, S. W.
name: Crawford, C. S.
name: Iwasawa, K.
name: Johnstone, R. M.
name: Schmidt, R. W.
name: Taylor, G. B.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present preliminary results from a deep observation lasting almost 200 ks, of the centre of the Perseus cluster of galaxies around NGC 1275. The X-ray surface brightness of the intracluster gas beyond the inner 20 kpc, which contains the inner radio bubbles, is very smooth apart from some low amplitude quasi-periodic ripples. A clear density jump at a radius of 24 kpc to the NE, about 10 kpc out from the bubble rim, appears to be due to a weak shock driven by the northern radio bubble. A similar front may exist round both inner bubbles but is masked elsewhere by rim emission from bright cooler gas. The continuous blowing of bubbles by the central radio source, leading to the propagation of weak shocks and viscously-dissipating sound waves seen as the observed fronts and ripples, gives a rate of working which balances the radiative cooling within the inner 50 kpc of the cluster core.
description: Accepted for publication in MNRAS (minor changes) Higher picture quality available from http://www-xray.ast.cam.ac.uk/papers/per_200ks.pdf