cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Steve: A hierarchical Bayesian model for Supernova Cosmology
Creators: name: Hinton, S. R.
name: Davis, T. M.
name: Kim, A. G.
name: Brout, D.
name: D'Andrea, C. B.
name: Kessler, R.
name: Lasker, J.
name: Lidman, C.
name: Macaulay, E.
name: Möller, A.
name: Sako, M.
name: Scolnic, D.
name: Smith, M.
name: Wolf, R. C.
name: Childress, M.
name: Morganson, E.
name: Allam, S.
name: Annis, J.
name: Avila, S.
name: Bertin, E.
name: Brooks, D.
name: Burke, D. L.
name: Rosell, A. Carnero
name: Kind, M. Carrasco
name: Carretero, J.
name: Cunha, C. E.
name: da Costa, L. N.
name: Davis, C.
name: De Vicente, J.
name: DePoy, D. L.
name: Doel, P.
name: Eifler, T. F.
name: Flaugher, B.
name: Fosalba, P.
name: Frieman, J.
name: García-Bellido, J.
name: Gaztanaga, E.
name: Gerdes, D. W.
name: Gruendl, R. A.
name: Gschwend, J.
name: Gutierrez, G.
name: Hartley, W. G.
name: Hollowood, D. L.
name: Honscheid, K.
name: Krause, E.
name: Kuehn, K.
name: Kuropatkin, N.
name: Lahav, O.
name: Lima, M.
name: Maia, M. A. G.
name: March, M.
name: Marshall, J. L.
name: Menanteau, F.
name: Miquel, R.
name: Ogando, R. L. C.
name: Plazas, A. A.
name: Sanchez, E.
name: Scarpine, V.
name: Schindler, R.
name: Schubnell, M.
name: Serrano, S.
name: Sevilla-Noarbe, I.
name: Soares-Santos, M.
name: Sobreira, F.
name: Suchyta, E.
name: Tarle, G.
name: Thomas, D.
name: Vikram, V.
name: Zhang, Y.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We present a new Bayesian hierarchical model (BHM) named Steve for performing type Ia supernova (SNIa) cosmology fits. This advances previous works by including an improved treatment of Malmquist bias, accounting for additional sources of systematic uncertainty, and increasing numerical efficiency. Given light curve fit parameters, redshifts, and host-galaxy masses, we fit Steve simultaneously for parameters describing cosmology, SNIa populations, and systematic uncertainties. Selection effects are characterised using Monte-Carlo simulations. We demonstrate its implementation by fitting realisations of SNIa datasets where the SNIa model closely follows that used in Steve. Next, we validate on more realistic SNANA simulations of SNIa samples from the Dark Energy Survey and low-redshift surveys. These simulated datasets contain more than $60\,000$ SNeIa, which we use to evaluate biases in the recovery of cosmological parameters, specifically the equation-of-state of dark energy, $w$. This is the most rigorous test of a BHM method applied to SNIa cosmology fitting, and reveals small $w$-biases that depend on the simulated SNIa properties, in particular the intrinsic SNIa scatter model. This $w$-bias is less than $0.03$ on average, less than half the statistical uncertainty on $w$.These simulation test results are a concern for BHM cosmology fitting applications on large upcoming surveys, and therefore future development will focus on minimising the sensitivity of Steve to the SNIa intrinsic scatter model.
description: 27 pages, 12 figures
MOESM5 of High dose gabapentin does not alter tumor growth in mice but reduces arginase activity and increases superoxide dismutase, IL-6 and MCP-1 levels in Ehrlich ascites
Creators: name: Leal, Plinio Cunha
name: Moura, Ed Carlos Rey
name: Cossetti, Rachel Jorge Dino
name: Nascimento, Johnny Ramos Do
name: Izabel Cristina Portela Bogéa Serra
name: Ribeiro, Bruno Paulo
name: Vale, Andre Álvares Marques
name: Santos, Ana Paula Silva De Azevedo Dos
name: Nascimento, Flavia Raquel Fernandes Do
name: Rioko Kimiko Sakata
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Cell Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: FOS: Biological sciences
subject: Computational Biology

description: Additional file 5: Fig S2. MCP-1 level in serum according to gabapentin dose. MCP-1 level increased with higher gabapentin dose.
Lie algebras of vertical derivations on semiaffine varieties with torus actions
Creators: name: Arzhantsev, Ivan
name: Liendo, Alvaro
name: Stasyuk, Taras
Publisher: name: arXiv
Year: 2019
Subjects: subject: Algebraic Geometry (math.AG)
subject: FOS: Mathematics

description: Let X be a normal variety endowed with an algebraic torus action. An additive group action $α$ on X is called vertical if a general orbit of $α$ is contained in the closure of an orbit of the torus action and the image of the torus normalizes the image of $α$ in Aut(X). Our first result in this paper is a classification of vertical additive group actions on X under the assumption that X is proper over an affine variety. Then we establish a criterion as to when the infinitesimal generators of a finite collection of additive group actions on X generate a finite-dimensional Lie algebra inside the Lie algebra of derivations of X.
description: 16 pages
Cauchy magnetic field component and magnitude distribution studied by the zero-field muon spin relaxation technique
Creators: name: Wan, X.
name: Kossler, W. J.
name: Stronach, C. E.
name: Noakes, D. R.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Zero-field muon spin relaxation (ZF-$μ$SR) data for dilute spin magnetic systems have been widely interpreted with what is called a Kubo-Toyabe form based on a Lorentzian distribution of local field components. We derive here the proper magnetic field \textit{magnitude} distribution using independent and uncorrelated \textit{component} distributions. Our result is then compared to the previously accepted formula for ZF-$μ$SR. We discuss the origins of the magnetic field component and magnitude distributions. Further we found that after rescaling the magnetic field, the differences that are amenable to experimental examination are quite small, although the interpretations behind them are quite different.
description: 3 pages, 1 figure
Aequipecten Fischer 1886
Creators: name: Dijkstra, H. H.
name: Kilburn, R. N.
Publisher: name: Zenodo
Year: 2001
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Bivalvia
Pectinida
Pectinidae
Aequipecten

description: Genus Aequipecten Fischer, 1886
 Aequipecten Fischer, 1886: 944 (proposed as a section of Chlamys). Type species (M): Ostrea opercularis Linnaeus, 1758; Recent, E Atlantic.
 Aequipecten (Perapecten) Wagner, 1985: 84. Type species (OD): Pecten commutatus Monterosato, 1875 [= n.n. for Pecten philippii Récluz, 1853 (non Pecten philippii Michelotti, 1839)]; Recent, NE Atlantic and Mediterranean. Syn. n.
 Lindapecten Petuch, 1995: 40. Type species (OD): Pecten muscosus Wood, 1828; (sub)tropical W Atlantic. Syn. n.
 Remarks: Wagner (1985) introduced Perapecten as a subgenus of Aequipecten, but subsequently (1991: 42) raised it to generic status. However, morphological characters (notably macro- and microsculpture, and auricular crura) are similar to those of Aequipecten. Petuch (1995: 40) considered that Perapecten differed from Aequipecten mainly in having more erect spines on the radial costae. This is a very variable character, which can be observed within various species of Chlamys and Mimachlamys. Furthermore we believe that all significant morphological characters in Lindapecten and Aequipecten are identical.
 Representative Recent species of Aequipecten are: A. commutatus (Monterosato, 1875) from the (sub)tropical E Atlantic, A. exasperatus (G. B. Sowerby 2nd, 1842) from the Caribbean region; A. flabellum (Gmelin, 1791) from the tropical E Atlantic; A. glyptus (Verrill, 1882) from the (sub)tropical W Atlantic; A. muscosus (Wood, 1828) from the (sub)tropical W Atlantic; A. opercularis (Linnaeus, 1758) from the boreal to subtropical E Atlantic, and A. tehuelchus (d’Orbigny, 1847) from the (sub)tropical SW Atlantic.
description: Published as part of Dijkstra, H. H. & Kilburn, R. N., 2001, The family Pectinidae in South Africa and Mozambique (Mollusca: Bivalvia: Pectinoidea), pp. 263-321 in African Invertebrates 42 on page 307, DOI: 10.5281/zenodo.7910445
Decoupling of supersymmetric particles
Creators: name: Dobado, A.
name: Herrero, M. J.
name: Peñaranda, S.
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The possibility of a heavy supersymmetric spectrum at the Minimal Supersymmetric Standard Model is considered and the decoupling from the low energy electroweak scale is analyzed in detail. The formal proof of decoupling of supersymmetric particles from low energy physics is stated in terms of the effective action for the particles of the Standard Model that results by integrating out all the sparticles in the limit where their masses are larger than the electroweak scale. The computation of the effective action for the standard electroweak gauge bosons W^{+-}, Z and γis performed by integrating out all the squarks, sleptons, charginos and neutralinos to one-loop. The Higgs sector is not considered in this paper. The large sparticle masses limit is also analyzed in detail. Explicit analytical formulae for the two-point functions of the electroweak gauge bosons to be valid in that limit are presented. Finally, the decoupling of sparticles in the S, T and U parameters is studied analitically. A discussion on how the decoupling takes place in terms of both the physical sparticle masses and the non-physical mass parameters as the μ-parameter and the soft-breaking parameters is included.
description: 50 pages, LaTeX + 2 postscript figures. Figures added, some points clarified, one section added, references updated. Accepted to Eur. Phys. J. C
Additional file 6: of Tumor stem-like cell-derived exosomal RNAs prime neutrophils for facilitating tumorigenesis of colon cancer
Creators: name: Hwang, Wei-Lun
name: Hsin-Yi Lan
name: Wei-Chung Cheng
name: Shih-Ching Huang
name: Muh-Hwa Yang
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: Inorganic Chemistry
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology
subject: 60506 Virology

description: Figure S5. Examination of miR-146a-5p/Numb axis in expanded CT26-SDCSCs. (A) RT-qPCR of cellular miR-146a-5p expression. Data represent the mean ± S.D. **P
Additional file 2 of In vivo oxygen measurement in cerebrospinal fluid of pigs to determine physiologic and pathophysiologic oxygen values during CNS infections
Creators: name: de Buhr, Nicole
name: Martens, Alexander
name: Meurer, Marita
name: Bonilla, Marta C.
name: Söbbeler, Franz
name: Twele, Lara
name: Neudeck, Stephan
name: Wendt, Michael
name: Beineke, Andreas
name: Kästner, Sabine
name: von Köckritz-Blickwede, Maren
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Neuroscience
subject: Physiology
subject: Immunology
subject: FOS: Clinical medicine
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 2. Additional figures.
Generalized minimum distance functions and algebraic invariants of Geramita ideals
Creators: name: Cooper, Susan M.
name: Seceleanu, Alexandra
name: Tohaneanu, Stefan O.
name: Pinto, Maria Vaz
name: Villarreal, Rafael H.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Commutative Algebra (math.AC)
subject: Information Theory (cs.IT)
subject: Algebraic Geometry (math.AG)
subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: FOS: Computer and information sciences
subject: 13P25, 14G50, 94B27, 11T71

description: Motivated by notions from coding theory, we study the generalized minimum distance (GMD) function $δ_I(d,r)$ of a graded ideal $I$ in a polynomial ring over an arbitrary field using commutative algebraic methods. It is shown that $δ_I$ is non-decreasing as a function of $r$ and non-increasing as a function of $d$. For vanishing ideals over finite fields, we show that $δ_I$ is strictly decreasing as a function of $d$ until it stabilizes. We also study algebraic invariants of Geramita ideals. Those ideals are graded, unmixed, $1$-dimensional and their associated primes are generated by linear forms. We also examine GMD functions of complete intersections and show some special cases of two conjectures of Tohăneanu--Van Tuyl and Eisenbud-Green-Harris.
SuperNNova: an open-source framework for Bayesian, Neural Network based supernova classification
Creators: name: Möller, Anais
name: de Boissière, Thibault
Publisher: name: arXiv
Year: 2019
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: We introduce SuperNNova, an open source supernova photometric classification framework which leverages recent advances in deep neural networks. Our core algorithm is a recurrent neural network (RNN) that is trained to classify light-curves using photometric information only. Additional information such as host-galaxy redshift can be incorporated to improve performance. We evaluate our framework using realistic supernovae simulations that include survey detection. We show that our method, for the type Ia vs. non Ia supernovae classification problem, reaches accuracies greater than 96.92 +- 0.09 without any redshift information and up to 99.55 +- 0.06 when redshift, either photometric or spectroscopic, is available. Further, we show that our method attains unprecedented performance for classification of incomplete light-curves, reaching accuracies >86.4 +- 0.1 (>93.5 +- 0.8) without host-galaxy redshift (with redshift information) two days before maximum light. In contrast with previous methods, there is no need for time-consuming feature engineering and we show that our method scales to very large datasets with a modest computing budget. In addition, we investigate often neglected pitfalls of machine learning algorithms. We show that commonly used algorithms suffer from poor calibration and overconfidence on out-of-distribution samples when applied to supernovae data. We devise extensive tests to estimate the robustness of classifiers and cast the learning procedure under a Bayesian light, demonstrating a much better handling of uncertainties. We study the benefits of Bayesian RNNs for SN Ia cosmology. Our code is open-sourced and available on https://github.com/supernnova/SuperNNova.
description: accepted version MNRAS December 2019
Surface and bulk critical behaviour of the XY chain in a transverse field
Creators: name: Karevski, D.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: The surface magnetization of the quantum XY chain in a transverse field is found for arbitrary nearest neighbour interactions in closed form. This allows to derive the bulk phase diagram in a simple way. The magnetic surface behaviour and the bulk correlation length are found exactly.
description: 5 pages, to be published in J. Phys. A
Additional file 1 of A cost study for mobile phone health surveys using interactive voice response for assessing risk factors of noncommunicable diseases
Creators: name: Vecino-Ortiz, Andres I.
name: Nagarajan, Madhuram
name: Katumba, Kenneth Roger
name: Akhter, Shamima
name: Tweheyo, Raymond
name: Gibson, Dustin G.
name: Ali, Joseph
name: Rutebemberwa, Elizeus
name: Khan, Iqbal Ansary
name: Labrique, Alain
name: Pariyo, George W.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Additional file 1. Appendix 1
Topics in nonhamiltonian (magnetic-type) interaction of classical hamiltonian dynamical systems. I
Creators: name: Juriev, Denis V.
Publisher: name: arXiv
Year: 1995
Subjects: subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: FOS: Physical sciences

description: A convenient algebraic structure to describe some forms of dynamics of two hamiltonian systems with nonpotential (magnetic--type) interaction is considered. An algebraic mechanism of generation of such dynamics is explored on simple "toy" examples and models. Nonpotential chains and their continuum limits are also considered. Examples of hybrid couplings with both potential and nonpotential (magnetic--type) interactions are discussed.
description: AMSTEX 9 pages, a slightly revised version
Cryptopecten Dall, Bartsch & Rehder 1938
Creators: name: Dijkstra, H. H.
name: Kilburn, R. N.
Publisher: name: Zenodo
Year: 2001
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Bivalvia
Pectinida
Pectinidae
Cryptopecten

description: Genus Cryptopecten Dall, Bartsch & Rehder, 1938
 Cryptopecten Dall, Bartsch & Rehder, 1938: 84, 93. Type species (OD): Cryptopecten alli Dall, Bartsch & Rehder, 1938 [= Pecten (Chlamys) bullatus Dautzenberg & Bavay, 1912]; Recent, Hawaii.
description: Published as part of Dijkstra, H. H. & Kilburn, R. N., 2001, The family Pectinidae in South Africa and Mozambique (Mollusca: Bivalvia: Pectinoidea), pp. 263-321 in African Invertebrates 42 on page 309, DOI: 10.5281/zenodo.7910445
Sum rule for the optical Hall angle
Creators: name: Drew, H. D.
name: Coleman, P.
Publisher: name: arXiv
Year: 1996
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: We consider the optical Hall conductivity of a general electronic medium and prove that the optical Hall angle obeys a new sum rule. This sum rule governs the response of an electronic fluid to a Lorentz electric field and can thought of as the transverse counterpart to the f-sum rule in optical conductivity. The physical meaning of this sum rule is discussed, giving a number of examples of its application to a variety of of electronic media.
description: Four pages. Latex file with two postscript figures
Additional file 1 of Reduction of estimated fluid volumes following initiation of empagliflozin in patients with type 2 diabetes and cardiovascular disease: a secondary analysis of the placebo-controlled, randomized EMBLEM trial
Creators: name: Tanaka, Atsushi
name: Shimabukuro, Michio
name: Teragawa, Hiroki
name: Okada, Yosuke
name: Takamura, Toshinari
name: Taguchi, Isao
name: Toyoda, Shigeru
name: Tomiyama, Hirofumi
name: Ueda, Shinichiro
name: Higashi, Yukihito
name: Node, Koichi
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 1. Changes in clinical parameters at weeks 4, 12, and 24.
Additional file 7: of Effect of ABO blood group on asymptomatic, uncomplicated and placental Plasmodium falciparum infection: systematic review and meta-analysis
Creators: name: Degarege, Abraham
name: Merhawi Gebrezgi
name: Beck-Sague, Consuelo
name: Wahlgren, Mats
name: Luiz Mattos
name: Purnima Madhivanan
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified

description: Table S4. Sources of heterogeneity assessment based on meta-regression analyses. (DOCX 16 kb)
Self-trapped Exciton and Franck-Condon Spectra Predicted in LaMnO$_3$
Creators: name: Allen, Philip B.
name: Perebeinos, Vasili
Publisher: name: arXiv
Year: 1999
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Because the ground state has cooperative Jahn-Teller order, electronic excitations in LaMnO$_3$ are predicted to self-trap by local rearrangement of the lattice. The optical spectrum should show a Franck-Condon series, that is, a Gaussian envelope of vibrational sidebands. Existing data are reinterpreted in this way. The Raman spectrum is predicted to have strong multiphonon features.
description: 5 pages with two embedded postscript figures
The memory effect in impulsive plane waves: comments, corrections, clarifications
Creators: name: Steinbauer, Roland
Publisher: name: arXiv
Year: 2018
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences
subject: 83C15, 83C35, 46F10, 34A36

description: Recently the 'memory effect' has been studied in plane gravitational waves and, in particular, in impulsive plane waves. Based on an analysis of the particle motion (mainly in Baldwin-Jeffery-Rosen coordinates) a 'velocity memory effect' is claimed to be found in [P.-M. Zhang, C. Duval, and P. A. Horvathy. Memory effect for impulsive gravitational waves. Classical Quantum Gravity, 35(6):065011, 20, 2018]. Here we point out a conceptual mistake in this account and employ earlier works to explain how to correctly derive the particle motion and how to correctly deal with the notorious distributional Brinkmann form of the metric and its relation to the continuous Rosen form.
description: Identical to the version published as "Comment on 'Memory effect for impulsive gravitational waves'" in Class. Quantum Grav., 12 pages, LaTeX
Additional file 4 of Microbiota long-term dynamics and prediction of acute graft-versus-host disease in pediatric allogeneic stem cell transplantation
Creators: name: Ingham, Anna Cäcilia
name: Kielsen, Katrine
name: Mordhorst, Hanne
name: Ifversen, Marianne
name: Aarestrup, Frank M.
name: Müller, Klaus Gottlob
name: Pamp, Sünje Johanna
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3. Supplementary discussion.
Gravitational Wave Denoising of Binary Black Hole Mergers with Deep Learning
Creators: name: Wei, Wei
name: Huerta, E. A.
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Data Analysis, Statistics and Probability (physics.data-an)
subject: FOS: Physical sciences
subject: I.2; J.2
subject: I.2, J.2

description: Gravitational wave detection requires an in-depth understanding of the physical properties of gravitational wave signals, and the noise from which they are extracted. Understanding the statistical properties of noise is a complex endeavor, particularly in realistic detection scenarios. In this article we demonstrate that deep learning can handle the non-Gaussian and non-stationary nature of gravitational wave data, and showcase its application to denoise the gravitational wave signals generated by the binary black hole mergers GW150914, GW170104, GW170608 and GW170814 from advanced LIGO noise. To exhibit the accuracy of this methodology, we compute the overlap between the time-series signals produced by our denoising algorithm, and the numerical relativity templates that are expected to describe these gravitational wave sources, finding overlaps ${\cal{O}}\gtrsim0.99$. We also show that our deep learning algorithm is capable of removing noise anomalies from numerical relativity signals that we inject in real advanced LIGO data. We discuss the implications of these results for the characterization of gravitational wave signals.
description: 26 pages, 10 figures. v2: new results for denoising and deglitching included, as well as denoising of spin-precessing binary black hole signals embedded in real advanced LIGO data. Accepted to Physics Letters B
Supplement
Creators: name: de Leon, Nathalie
name: Yuan, Zhiyang
name: Mukherjee, Sounak
name: Gardill, Aedan
name: Thompson, Jeff
name: Kolkowitz, Shimon
Publisher: name: AIP Publishing
Year: 2024
Subjects: classificationCode: 39
subject: Education
classificationCode: 51
subject: Physical sciences
subject: FOS: Physical sciences
classificationCode: 40
subject: Engineering

description: supplementary material
Mu Problem and Hybrid Inflation in Supersymmetric SU(2)_L x SU(2)_R x U(1)_B-L
Creators: name: Dvali, G.
name: Lazarides, G.
name: Shafi, Q.
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We present a solution of the mu problem within a supersymmetric model based on the SU(2)_L x SU(2)_R x U(1)_{B-L} gauge group. We show that this solution implies a built-in hybrid inflationary scenario, which may result in a successful baryogenesis via leptogenesis. Baryon number is essentially conserved as a result of an R-symmetry. Neutrinos with mass in the eV range can provide the `hot' dark matter component.
description: 11 pages, LaTeX, RevTeX, no figs
Additional file 1 of Interaction of miR-200a-3p with YAP regulates cell proliferation and metastasis differentially in HPV-positive and HPV-negative cervical cancer cells
Creators: name: Chen, Hong
name: Gu, Lingling
name: Zhang, Min
name: Chen, Huifen
name: Liao, Hong
name: Cao, Xueping
name: Yu, Lu
name: Zhang, Jun
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Biotechnology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Additional file 1: Supplementary Fig. S1. qRT-PCRassessmentsoftransfectionefficiencies The transfection efficiencies of miR-200a-3p mimics (A), sh-miR-200a-3p (B), and YAP(C)wereperformedinC33A,SihaandHelacells.*p<0.05, **p<0.01,***p<0.001,ns:notsignificant. The authors declare that they have no competing interests. Supplementary Fig. S2. themRNAandproteinlevelsofYAPinHelacells Significant decreases in levels of YAP mRNA (A) and YAP protein (B) following up-regulations of miR-200a-3p, or significant increases in levels of YAP mRNA (C) and protein (D) following down-regulations of miR-200a-3p were not observed in Helacells.*p<0.05,**p<0.01,***p<0.001,ns:notsignificant.
MOESM4 of High dose gabapentin does not alter tumor growth in mice but reduces arginase activity and increases superoxide dismutase, IL-6 and MCP-1 levels in Ehrlich ascites
Creators: name: Leal, Plinio Cunha
name: Moura, Ed Carlos Rey
name: Cossetti, Rachel Jorge Dino
name: Nascimento, Johnny Ramos Do
name: Izabel Cristina Portela Bogéa Serra
name: Ribeiro, Bruno Paulo
name: Vale, Andre Álvares Marques
name: Santos, Ana Paula Silva De Azevedo Dos
name: Nascimento, Flavia Raquel Fernandes Do
name: Rioko Kimiko Sakata
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 4: Fig S1. SOD activity in ascites according to gabapentin dose. SOD activity in ascites increased with higher gabapentin dose.
A geometric dual of $c$-extremization
Creators: name: Couzens, Christopher
name: Gauntlett, Jerome P.
name: Martelli, Dario
name: Sparks, James
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Differential Geometry (math.DG)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: We consider supersymmetric AdS$_3 \times Y_7$ and AdS$_2 \times Y_9$ solutions of type IIB and $D=11$ supergravity, respectively, that are holographically dual to SCFTs with $(0,2)$ supersymmetry in two dimensions and $\mathcal{N}=2$ supersymmetry in one dimension. The geometry of $Y_{2n+1}$, which can be defined for $n\ge 3$, shares many similarities with Sasaki-Einstein geometry, including the existence of a canonical R-symmetry Killing vector, but there are also some crucial differences. We show that the R-symmetry Killing vector may be determined by extremizing a function that depends only on certain global, topological data. In particular, assuming it exists, for $n=3$ one can compute the central charge of an AdS$_3 \times Y_7$ solution without knowing its explicit form. We interpret this as a geometric dual of $c$-extremization in $(0,2)$ SCFTs. For the case of AdS$_2 \times Y_9$ solutions we show that the extremal problem can be used to obtain properties of the dual quantum mechanics, including obtaining the entropy of a class of supersymmetric black holes in AdS$_4$. We also study many specific examples of the type AdS$_3\times T^2 \times Y_5$, including a new family of explicit supergravity solutions. In addition we discuss the possibility that the $(0,2)$ SCFTs dual to these solutions can arise from the compactification on $T^2$ of certain $d=4$ quiver gauge theories associated with five-dimensional Sasaki-Einstein metrics and, surprisingly, come to a negative conclusion.
description: 67 pages. Minor changes, published version
Nonperturbative Contributions to the Hot Electroweak Potential and the Crossover
Creators: name: Huber, S. J.
name: Laser, A.
name: Reuter, M.
name: Schmidt, M. G.
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We discuss nonperturbative contributions to the 3-dimensional one-loop effective potential of the electroweak theory at high temperatures in the framework of the stochastic vacuum model. It assumes a gauge-field background with Gaussian correlations which leads to confinement. The instability of =0 in Yang-Mills theory appears for small Higgs expectation value in an IR regularized form. The gauge boson propagator obtains a positive momentum-dependent ``diamagnetic'' effective (mass)^2 due to confinement effects and a negative one due to ``paramagnetic'' spin-spin interactions which are related to the =0 instability. Numerical evaluation of an approximate effective potential containing these masses shows qualitatively the fading away of the first-order phase transition with increasing Higgs mass which was observed in lattice calculations. The crossover point can be roughly determined postulating that the effective ϕ^4 and ϕ^2 terms vanish there.
description: 33 pages LaTeX, 8 figs using epsf; revised version (to be published in Nucl. Phys. B)
Additional file 8 of Survival analysis and influence of the surgical aggression of a cohort of orthopedic and trauma patients in a non-controlled spread COVID-19 scenario
Creators: name: Corella, Fernando
name: Rosales, Roberto S.
name: Guzman Domenech, David
name: Cañones Martín, Miguel
name: Larrainzar-Garijo, Ricardo
Publisher: name: figshare
Year: 2021
Subjects: Medicine
Biotechnology
Cancer
Science Policy

description: Additional file 8. Model assessment. The complete STATA data are shown for the following: A Schonefeld residuals. B Test based on the interaction between survival-time and the independent variables. C Log linear assumption. D Quality of the follow-up.
Solving the disordered structure of $β$-Cu$_{2-x}$Se using the three-dimensional difference pair distribution function
Creators: name: Roth, Nikolaj
name: Iversen, Bo B.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: High-performing thermoelectric materials such as Zn$_4$Sb$_3$ and clathrates have atomic disorder as the root to their favorable properties. This makes it extremely difficult to understand and model their properties at a quantitative level, and thus effective structure-property relations are challenging to obtain. Cu$_{2-x}$Se is an intensely studied, cheap and non-toxic high performance thermoelectric, which exhibits highly peculiar transport properties, especially around the $β$ to $α$ phase transition around 400 K, which must be related to the detailed nature of the crystal structure. Attempts to solve the crystal structure of the low temperature phase, $β$-Cu$_{2-x}$Se, have been unsuccessful since 1936. So far all studies have assumed that $β$-Cu$_{2-x}$Se has a three-dimensional periodic structure, but here we show that the structure is ordered only in two dimensions while being disordered in the third dimension with a highly disordered stacking sequence. Using the three-dimensional difference pair distribution function (3D-$Δ$PDF) analysis method for diffuse single crystal X-ray scattering, we solve the structure of the ordered layer and show that there are two modes of stacking disorder present, which give rise to an average structure with higher symmetry. The present approach allows for a direct solution of structures with disorder in some dimensions and order in others. The local and extended structure of a solid determines its properties and Cu$_{2-x}$Se represents an example of a high-performing thermoelectric material where the local atomic structure differs significantly from the average periodic structure observed from Bragg crystallography.
Thermodynamics of the Bardeen Black Hole in Anti-de Sitter Space
Creators: name: Li, Cong
name: Fang, Chao
name: He, Miao
name: Ding, Jiacheng
name: Li, Ping
name: Deng, Jianbo
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We first study the thermodynamics of Bardeen-AdS black hole by the $T$-$r_{h}$ diagram, where T is the Hawking temperature and $r_{h}$ is the radius of event horizon. The cut-off radius which is the minimal radius of the thermodynamical stable Bardeen black hole can be got, and the cut-off radius is the same with the result of the heat capacity analysis. Moreover, by studying the parameter $g$, which is interpreted as a gravitationally collapsed magnetic monopole arising in a specific form of non-linear electrodynamics, in the Bardeen black hole, we can get a critical value $g_{m}$ and different phenomenons with different values of parameter $g$. For $g>g_{m}$, there is no second order phase transition. We also research the thermodynamical stability of the Bardeen black hole by the Gibbs free energy and the heat capacity. In addition, the phase transition is discussed.
MOESM3 of High dose gabapentin does not alter tumor growth in mice but reduces arginase activity and increases superoxide dismutase, IL-6 and MCP-1 levels in Ehrlich ascites
Creators: name: Leal, Plinio Cunha
name: Moura, Ed Carlos Rey
name: Cossetti, Rachel Jorge Dino
name: Nascimento, Johnny Ramos Do
name: Izabel Cristina Portela Bogéa Serra
name: Ribeiro, Bruno Paulo
name: Vale, Andre Álvares Marques
name: Santos, Ana Paula Silva De Azevedo Dos
name: Nascimento, Flavia Raquel Fernandes Do
name: Rioko Kimiko Sakata
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3: Table S1. Weight gain, abdominal circumference, ascites volume and tumor cell count according to study group.
Symmetry and Quantum Kinetics of the Non-linear Hall Effect
Creators: name: Nandy, Snehasish
name: Sodemann, Inti
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We argue that the static non-linear Hall conductivity can always be represented as a vector in two-dimensions and as a pseudo-tensor in three-dimensions independent of its microscopic origin. In a single band model with a constant relaxation rate this vector or tensor is proportional to the Berry curvature dipole \cite{Sodemann_2015}. Here, we develop a quantum Boltzmann formalism to second order in electric fields. We find that in addition to the Berry Curvature Dipole term, there exist additional disorder mediated corrections to the non-linear Hall tensor that have the same scaling in impurity scattering rate. These can be thought of as the non-linear counterparts to the side-jump and skew-scattering corrections to the Hall conductivity in the linear regime. We illustrate our formalism by computing the different contributions to the non-linear Hall conductivity of two-dimensional tilted Dirac fermions.
description: 5 pages, 1 figure, Phys Rev. B version
Microchaetus zaloumisi Plisko 1992
Creators: name: Plisko, Jadwiga Danuta
Publisher: name: Zenodo
Year: 2002
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Clitellata
Crassiclitellata
Microchaetidae
Microchaetus
Microchaetus zaloumisi

description: Microchaetus zaloumisi Plisko, 1992
 Microchaetus zaloumisi Plisko, 1992: 352.
 Microchaetus zaloumisi; Reynolds & Cook 1976: 22; Plisko 1993: 236;1998: 293.
 Material examined: KwaZulu-Natal: NMSA /Olig.03537, Port Shepstone area, Marble Delta, north side of Umzimkulwana River at base of Simuma Hill (30º40.367'S: 30º20.563'E), in dense riverine thicket/woodland, heavily invaded with Lantana and Chromoleana, in deep leaf-litter/soil, 4 December 2001, 1 clitellate + 2 juvenile, D. G. Herbert leg.
Distribution: Described from Vernon Crookes Nature Reserve situated in southern coastal KwaZulu-Natal. This new locality record suggests that the species may range widely in the coastal lowlands of KwaZulu-Natal.
 Biological notes: The type locality and other localities where the species was previously collected are all in the protected area of the reserve. Present data suggest that the species is able to adapt to degraded fields. M. zaloumisi is associated with the new species herberti.
description: Published as part of Plisko, Jadwiga Danuta, 2002, Three new earthworm species of Microchaetus Rapp, 1849, and new data on two earlier known species of this genus (Oligochaeta: Microchaetidae), pp. 205-214 in African Invertebrates 43 on page 213, DOI: 10.5281/zenodo.7909864
Competition between the Mott transition and the Anderson localization in 1D disordered interacting electron systems
Creators: name: Fujimoto, Satoshi
name: Kawakami, Norio
Publisher: name: arXiv
Year: 1996
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: The competition between the Mott transition and the Anderson localization in one dimensional electron systems is studied based upon the bosonization and the renormalization group method. The beta function is calculated up to the second order in the strength of diagonal disorder by using a replica trick. It is found that the sufficiently strong forward scattering by random impurities destroys the Mott-Hubbard gap, and the backward scattering gives rise to the Anderson localization for the resulting gapless state. On the other hand, if the Umklapp interaction is strong enough, the Mott insulating state still overwhelms the Anderson localization.
description: 4 pages, Revtex, figures included, to appear in Phys. Rev. B (Rapid Communication)
Additional file 5: of Tumor stem-like cell-derived exosomal RNAs prime neutrophils for facilitating tumorigenesis of colon cancer
Creators: name: Hwang, Wei-Lun
name: Hsin-Yi Lan
name: Wei-Chung Cheng
name: Shih-Ching Huang
name: Muh-Hwa Yang
Publisher: name: figshare
Year: 2019
Subjects: subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Figure S4. The trans-well migration potential of SDCSC-exosome-treated neutrophils. (A) A flow chart illustrating the experimental design for quantifying migrated cells by flow cytometry. (B) Representative results for counting migrated cells by flow cytometry. IgG, normal IgG (10 μg/ml); CXCL1 nAb, neutralizing antibody against CXCL1 (5 μg/ml); CXCL2 nAb, neutralizing antibody against CXCL2 (5 μg/ml). (PDF 2541 kb)
Additional file 5 of DNA methylation of miR-138 regulates cell proliferation and EMT in cervical cancer by targeting EZH2
Creators: name: Chen, Rui
name: Gan, Qiyu
name: Zhao, Shuting
name: Zhang, Dongrui
name: Wang, Shunli
name: Yao, Lili
name: Yuan, Min
name: Cheng, Jingxin
Publisher: name: figshare
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Plant Biology
subject: Virology

description: Additional file 5: Supplementary Figure 4. The original WB bands. (a) The original WB bands of Figure 3f. (b) The original WB bands of Figure 4i. (c) The original WB bands of Figure 5f.
Additional file 7 of Survival analysis and influence of the surgical aggression of a cohort of orthopedic and trauma patients in a non-controlled spread COVID-19 scenario
Creators: name: Corella, Fernando
name: Rosales, Roberto S.
name: Guzman Domenech, David
name: Cañones Martín, Miguel
name: Larrainzar-Garijo, Ricardo
Publisher: name: figshare
Year: 2021
Subjects: Medicine
Biotechnology
Cancer
Science Policy

description: Additional file 7. Differences in survival curves by Group of Surgery. The complete STATA data are shown for the following: Log rank, Breslow, and Tare tests for comparing survivor curves by Group of Surgery.
Single-mode delay time statistics for scattering by a chaotic cavity
Creators: name: van Bemmel, K. J. H.
name: Schomerus, H.
name: Beenakker, C. W. J.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: We investigate the low-frequency dynamics for transmission or reflection of a wave by a cavity with chaotic scattering. We compute the probability distribution of the phase derivative phi'=d phi/d omega of the scattered wave amplitude, known as the single-mode delay time. In the case of a cavity connected to two single-mode waveguides we find a marked distinction between detection in transmission and in reflection: The distribution P(phi') vanishes for negative phi' in the first case but not in the second case.
description: 10 pages including 3 figures; to be published in Physica Scripta (proceedings Nobel Symposium on Quantum Chaos)
Controlling light emission by engineering atomic geometries in silicon photonics
Creators: name: Nandi, Arindam
name: Jiang, Xiaodong
name: Pak, Dongmin
name: Perry, Daniel
name: Han, Kyunghun
name: Bielejec, Edward S
name: Xuan, Yi
name: Hosseini, Mahdi
Publisher: name: arXiv
Year: 2019
Subjects: subject: Applied Physics (physics.app-ph)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: By engineering atomic geometries composed of nearly 1000 atomic segments embedded in micro-resonators we observe Bragg resonances induced by the atomic lattice at the telecommunication wavelength. The geometrical arrangement of erbium atoms into a lattice inside a silicon nitride microring resonator reduces the scattering loss at a wavelength commensurate with the lattice. We confirm dependency of light emission to the atomic positions and lattice spacing and also observe Fano interference between resonant modes in the system.
description: 4 pages, 3 figures
Additional file 2 of Microbiota long-term dynamics and prediction of acute graft-versus-host disease in pediatric allogeneic stem cell transplantation
Creators: name: Ingham, Anna Cäcilia
name: Kielsen, Katrine
name: Mordhorst, Hanne
name: Ifversen, Marianne
name: Aarestrup, Frank M.
name: Müller, Klaus Gottlob
name: Pamp, Sünje Johanna
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. Supplementary Table S1. Patient characteristics. Abbreviations: HLA, human leukocyte antigen; TBI, total body irradiation; CY, Cyclophosphamide; VP16, Etoposide; BU, Busulfan; MEL, Melphalan; GvHD, graft-versus-host disease. Supplementary Table S2. Taxonomy of a subset of LDA clade members and corresponding LDA-coefficients in the gut, oral cavity, and nasal cavity. Supplementary Table S3. Taxonomy of aGvHD predictors within the fecal, oral, and nasal microbiota. ASVs that were significantly predicting aGvHD severity according to the conditional inference tree regression model are highlighted in bold. Of the 50 most important gut ASVs identified by the svmLinear model, 17 were confirmed by Boruta feature selection and are listed here. In the oral and nasal cavities, 26 and 12 ASVs were confirmed by Boruta selection, respectively. Listed in bold are those ASVs with a significant predictive effect on aGvHD severity, tested in a regression framework with CTREE (see Methods).
Additional file 6: of Effect of ABO blood group on asymptomatic, uncomplicated and placental Plasmodium falciparum infection: systematic review and meta-analysis
Creators: name: Degarege, Abraham
name: Merhawi Gebrezgi
name: Beck-Sague, Consuelo
name: Wahlgren, Mats
name: Luiz Mattos
name: Purnima Madhivanan
Publisher: name: figshare
Year: 2019
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Science Policy

description: Figure S3. Funnel plot. Odds ratio against standard error of odds ratio for studies, which compared the odds of placental Plasmodium falciparum infection vs Plasmodium uninfected among individuals with blood group A vs O, B vs O, AB vs O and Non-O vs O. (DOCX 205 kb)
Additional file 6 of Survival analysis and influence of the surgical aggression of a cohort of orthopedic and trauma patients in a non-controlled spread COVID-19 scenario
Creators: name: Corella, Fernando
name: Rosales, Roberto S.
name: Guzman Domenech, David
name: Cañones Martín, Miguel
name: Larrainzar-Garijo, Ricardo
Publisher: name: figshare
Year: 2021
Subjects: Medicine
Biotechnology
Cancer
Science Policy

description: Additional file 6. Failure function (cumulative incidence of mortality) in the entire cohort according to the K-M method and the competing risk. The complete STATA data are shown for the following: A Survival function by Group of Surgery. B K-M failure function. Entire cohort. C Failure function. Competing risk. D K-M failure function by Group of Surgery. E Comparison of life tables of survival (actuarial method) by Group of Surgery.