cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Appréhender l'écriture d'un Data Paper proposant une approche réflexive et analytique des données de la recherche en SHS
Creators: name: Audrey Knauf
Publisher: name: Zenodo
Year: 2022
Subjects: data paper
research data
science ouverte
open science

description: Nous proposons un retour d’expérience sur l’écriture d’un Data Paper, révélant la difficulté de se saisir d’un format d’article relativement récent pour le champ des SHS, mais invitant par là même, à questionner la réutilisation de ses données de recherche d'un point de vue pédagogique et scientifique.

Cette présentation a été réalisée lors du webinaire du mardi 5 juillet 2022, organisé par le GTSO Données de Couperin. Elle est consacrée à l’écriture d’un Data Paper : https://gtsodataweb3.sciencesconf.org/.

L’enregistrement est disponible ici : https://www.canal-u.tv/chaines/couperin/data-papers-quand-comment-pourquoi
Additional file 1: of [18F]tetrafluoroborate as a PET tracer for the sodium/iodide symporter: the importance of specific activity
Creators: name: Khoshnevisan, Alex
name: Jauregui-Osoro, Maite
name: Shaw, Karen
name: Torres, Julia
name: Young, Jennifer
name: Ramakrishnan, Nisha
name: Jackson, Alex
name: Smith, Gareth
name: Gee, Antony
name: Blower, Philip
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Radioisotopes used for theranostic applications and reporter gene imaging with NIS. (PDF 73.9 KB).
Additional file 1: of The wisdom of the intermediary: the role, function, and ways-of-being of the intermediary in a strategic program for university-industry relations
Creators: name: FrĂ¸Lund, Lars
name: Ziethen, Morten
Publisher: name: Figshare
Year: 2016
Subjects: subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Translation of the abstract into Arabic. (PDF 162 kb)
Toritrombicula dumbletoni
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Toritrombicula
Toritrombicula dumbletoni

description: Toritrombicula dumbletoni (Womersley and Audy, 1957):
AUS
Trombicula (Vorcana) densipiliata dumbletoni, Audy 1956c
Toritrombicula dumbletoni, Nadchatram 1967b; Stekolnikov 2021
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 182, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
MOESM1 of The Sierra Leone Ultrasound Rainbow4Africa Project (SLURP): an observational study of ultrasound effectiveness in developing countries
Creators: name: Lamorte, Alessandro
name: Boero, Enrico
name: Crida, Paola
name: Conteh, Abdul
name: Foletti, Marco
name: Narcisi, Paolo
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology

description: Additional file 1. Informed consent form.
Ophintegrida O'Hara, Hugall, Thuy, Stohr & Martynov 2017
Creators: name: Stöhr, Sabine
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Ophiuroidea

description: Ophintegrida
- oral GP present (sometimes secondarily lost)
description: Published as part of Stöhr, Sabine, 2024, Taxonomic analysis of the genital plates and associated structures in Ophiuroidea (Echinodermata), pp. 1-98 in European Journal of Taxonomy 933 on page 72, DOI: 10.5852/ejt.2024.933.2525, http://zenodo.org/record/11198874
Ophiohelidae Perrier 1893
Creators: name: Stöhr, Sabine
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Ophiuroidea
Ophioscolecida
Ophiohelidae

description: Ophiohelidae
- oral GP absent
- adGP thin, flat, straight, blade-like, articular structure weakly domed
- RS absent
- madreporite with small central opening
description: Published as part of Stöhr, Sabine, 2024, Taxonomic analysis of the genital plates and associated structures in Ophiuroidea (Echinodermata), pp. 1-98 in European Journal of Taxonomy 933 on page 72, DOI: 10.5852/ejt.2024.933.2525, http://zenodo.org/record/11198874
Additional file 1: of The wisdom of the intermediary: the role, function, and ways-of-being of the intermediary in a strategic program for university-industry relations
Creators: name: FrĂ¸Lund, Lars
name: Ziethen, Morten
Publisher: name: Figshare
Year: 2016
Subjects: subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: Translation of the abstract into Arabic. (PDF 162 kb)
Euryalidae Gray 1840
Creators: name: Stöhr, Sabine
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Ophiuroidea
Euryalida
Euryalidae

description: Euryalidae
- adGP bar-like, distally inflated, flat articular structures
- abGP elongated half-circle, distally thicker, flat articular structures
- RS without scales, easily fragmenting, bar-like, curved, dorsodistally spatulate, ventrally round and thick, flat articular structures
- madreporite inner side with large openings or network structure
description: Published as part of Stöhr, Sabine, 2024, Taxonomic analysis of the genital plates and associated structures in Ophiuroidea (Echinodermata), pp. 1-98 in European Journal of Taxonomy 933 on page 72, DOI: 10.5852/ejt.2024.933.2525, http://zenodo.org/record/11198874
Ophioscolecida O'Hara, Hugall, Thuy, Stohr & Martynov 2017
Creators: name: Stöhr, Sabine
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Ophiuroidea
Ophioscolecida

description: Ophioscolecida
- abGP thin, flat, straight blade-like
description: Published as part of Stöhr, Sabine, 2024, Taxonomic analysis of the genital plates and associated structures in Ophiuroidea (Echinodermata), pp. 1-98 in European Journal of Taxonomy 933 on page 72, DOI: 10.5852/ejt.2024.933.2525, http://zenodo.org/record/11198874
Additional file 1: of Aurora kinase targeting in lung cancer reduces KRAS-induced transformation
Creators: name: Edmilson Dos Santos
name: Carneiro-Lobo, Tatiana
name: Aoki, Mateus
name: Levantini, Elena
name: Bassères, Daniela
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer

description: Materials and methods used in the data presented in the additional figures, which are not included in the main manuscript. (PDF 80 kb)
Are Boys More Vulnerable to Stunting? Examining Risk Factors, Differential Sensitivity, and Measurement Issues in Zambian Infants and Young Children
Creators: name: Sakala, Patricia
name: Martin, Stephanie L
name: Berhane, Edna
name: Onyango, Matthews
name: Selvaggio, Mary Pat
name: Thompson, Amanda L
name: Manda, John
Publisher: name: Elsevier
Year: 2024

description:
Background


Stunting remains a considerable public health problem globally, and sex differences in prevalence have been documented. While many risk factors for stunting have been identified, few studies examine how these factors may contribute to sex differences. We test whether: (1) boys and girls are differentially exposed to stunting risk factors, (2) boys and girls respond differently to similar exposures, and (3) these associations are sensitive to the growth measures used.


Methods


Data comes from 7486 Zambian infants, aged 0–23 months, participating in the SUN (Scaling Up Nutrition) 2.0 Program baseline survey. Surveys and dietary recalls were collected from primary caregivers, and anthropometry was collected for caregivers and children. Stunting was defined as height-for-age z-score (HAZ) <-2. Descriptive statistics and adjusted multilevel logistic regression models controlling for age and province were used to identify sex differences in exposures and risk factors for stunting, respectively. Interaction terms between exposure and infant sex were added to test for sex differences in response. Sensitivity testing with alternate measures of infant size, including height-for-age difference (HAD), was conducted.


Results


Boys were more likely to be stunted than girls (34.5% vs. 25.7%, respectively). Numerous maternal, care giving, diet, and household characteristics were associated with the risk of stunting, but few sex differences were seen in exposure to these factors. Only one risk factor—maternal marital status—showed evidence of moderation by sex at the p < 0.05 level, while a limited number of risk factors did so at the p < 0.10 level. At all ages, boys were longer than girls, and there were no sex-specific differences in the patterns of HAZ or HAD with age. Results were robust to alternate specifications.


Conclusions


Our results show that Zambian boys have lower mean HAZ scores than girls and a greater prevalence of stunting throughout the first two years We do not find strong evidence that infant feeding practices, environmental exposures, or care giving differ consistently between boys and girls or that boys and girls respond differently to these exposures. Our results instead indicate that further investigation of prenatal factors and/or measurement issues is needed.
MOESM2 of The Sierra Leone Ultrasound Rainbow4Africa Project (SLURP): an observational study of ultrasound effectiveness in developing countries
Creators: name: Lamorte, Alessandro
name: Boero, Enrico
name: Crida, Paola
name: Conteh, Abdul
name: Foletti, Marco
name: Narcisi, Paolo
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology

description: Additional file 2. HSH ultrasound data sheet.
Symptom Monitoring With Patient-Reported Outcomes During Pediatric Cancer Care
Creators: name: Basch, Ethan
name: Reeve, Bryce B.
name: Leahy, Allison Barz
Publisher: name: American Medical Association (AMA)
Year: 2024

description:
Over the past 5 decades, clinical outcomes have significantly improved for children with cancer through the availability of new treatment regimens. However, these advancements come with treatment-related symptomatic toxicities such as nausea, fatigue, and pain that often go undetected by care teams, leading to preventable suffering and avoidable downstream consequences such as hospitalizations.
Additional file 3: of Algorithm based patient care protocol to optimize patient care and inpatient stay in head and neck free flap patients
Creators: name: OâConnell, Daniel
name: Barber, Brittany
name: Klein, Max
name: Soparlo, Jeff
name: Al-Marzouki, Hani
name: Harris, Jeffrey
name: Seikaly, Hadi
Publisher: name: Figshare
Year: 2015
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Head and neck reconstruction intake form. Intake form for head and neck reconstruction patients. (PDF 1015Â kb)
RESEARCH OF PSYCHOLOGICAL RISKS OF DEVELOPMENT OF CARDIOVASCULAR AND ONCOLOGICAL DISEASES BY THE TWIN METHOD
Creators: name: Berezina, T.N.
name: Balan, I.
Publisher: name: United Edition
Year: 2020

description:
The psychological factors affecting the risk of cardiovascular and oncological diseases were investigated. The twin research method, a natural experiment, was used. The sample included 100 pairs of monozygotic twins who lived in Russia in the 20-21 centuries and have already completed their life paths. Based on a survey of relatives, the following were studied: life expectancy, features of the life path and personality of twins, the presence of diseases. The relationship between the risk of developing cancer or cardiovascular disease with the personality characteristics of the subjects was evaluated using a one-way analysis of variance. The risk of developing cancer was associated with a persons passivity, the total number of diseases, the presence of bad habits, in particular, overeating. a small number of hobbies, hobbies in the form of needlework, Resource zones were: an increase in the number of hobbies and the presence of sports hobbies. The risk of contracting cardiovascular diseases correlated with the development of goal-oriented personality traits and the presence of children. Resource zones were: accommodation in a large city and a large number of transfers.

description:
Исследовались психологические факторы, влияющие на риск возникновения сердечно-сосудистых заболеваний и онкологических. Использовался близнецовый метод исследования, естественный эксперимент. Выборка включала в себя 100 пар монозиготных близнецов, проживавших на территории России в 20-21 веках и уже завершивших жизненный путь. На основании опроса родственников изучались: продолжительность жизни, особенности жизненного пути и личности близнецов, наличие заболеваний. Оценивались взаимосвязи риска заболеть онкозаболеваниями или сердечно-сосудистыми с личностными особенностями испытуемых при помощи однофакторного дисперсионного анализа. Риск заболеть онкозаболеванием оказался связан с пассивностью человека, общим количеством заболеваний, наличием вредных привычек, в частности, переедания. малым количеством увлечений, хобби в виде рукоделия, Ресурсными зонами выступили: увеличение количества хобби и наличие спортивных увлечений. Риск заболеть сердечно-сосудистыми заболеваниями коррелировала с развитием целеволевых качеств личности и наличием детей. Ресурсными зонами выступили: проживание в крупном городе и большое количество переездов.
Ophiacanthida O'Hara, Hugall, Thuy, Stohr & Martynov 2017
Creators: name: Stöhr, Sabine
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Ophiuroidea
Ophiacanthida

description: Ophiacanthida
- madreporite inner side with large opening near distal edge (except in Ophiocamacidae)
description: Published as part of Stöhr, Sabine, 2024, Taxonomic analysis of the genital plates and associated structures in Ophiuroidea (Echinodermata), pp. 1-98 in European Journal of Taxonomy 933 on page 72, DOI: 10.5852/ejt.2024.933.2525, http://zenodo.org/record/11198874
Additional file 3: of Algorithm based patient care protocol to optimize patient care and inpatient stay in head and neck free flap patients
Creators: name: OâConnell, Daniel
name: Barber, Brittany
name: Klein, Max
name: Soparlo, Jeff
name: Al-Marzouki, Hani
name: Harris, Jeffrey
name: Seikaly, Hadi
Publisher: name: Figshare
Year: 2015
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Infectious Diseases
subject: FOS: Health sciences

description: Head and neck reconstruction intake form. Intake form for head and neck reconstruction patients. (PDF 1015Â kb)
Decoding Aging in the Heart via Single Cell Dual Omics of Non-Cardiomyocytes
Creators: name: Qian, Li
name: Song, Yiran
name: Xu, Jun
name: Ma, Hong
name: Wang, Haofei
name: Liu, Jiandong
name: Wang, Li
Publisher: name: Elsevier
Year: 2024

description:
To understand heart aging at the single-cell level, we employed single-cell dual omics (scRNA and scATAC) in profiling non-myocytes (non-CMs) from young, middle-aged, and elderly mice. Non-CMs, vital in heart development, physiology, and pathology, are understudied compared to cardiomyocytes. Our analysis revealed aging response heterogeneity and its dynamics over time. Immune cells, notably macrophages and neutrophils, showed significant aging alterations, while endothelial cells displayed moderate changes. We identified distinct aging signatures within the cell type, including differential gene expression, transcription factor activity, and motif variation. Sub-cluster analysis revealed intra-cell type heterogeneity, characterized by diverse aging patterns. The senescence-associated secretory phenotype emerged as a key aging-related phenotype. Moreover, aging significantly influenced cell-cell communication, especially impacting a fibroblast sub-cluster with high expression of ERBB4. This study elucidates the complex cellular and molecular landscape of cardiac aging and offers guidance for potential therapeutic avenues to treat aging-related heart diseases.
Ophiodermatoidea Ljungman 1867
Creators: name: Stöhr, Sabine
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Ophiuroidea
Amphilepidida

description: Ophiodermatoidea
- oral GP comma-shaped
- abGP half as long as adGP
description: Published as part of Stöhr, Sabine, 2024, Taxonomic analysis of the genital plates and associated structures in Ophiuroidea (Echinodermata), pp. 1-98 in European Journal of Taxonomy 933 on page 72, DOI: 10.5852/ejt.2024.933.2525, http://zenodo.org/record/11198874
Use of epigenetically modified bacteriophage and dual beta-lactams to treat a Mycobacterium abscessus sternal wound infection
Creators: name: Garlena, Rebecca
name: Xiao, Jaime
name: Jacobs-Sera, Deborah
name: Abad, Lawrence
name: Coakley, Raymond
name: van Duin, David
name: Shashkina, Elena
name: Miller, Melissa B.
name: Viland, Maggie
name: Hatfull, Graham F.
name: Kaganovsky, Ari
name: Friedland, Anne
name: Footer, Brent
name: Lobo, Leonard Jason
name: Mowry, Emily
name: Lauer, Michael J.
name: Cristinziano, Madison
name: Russell, Daniel A.
name: Chen, Liang
name: Kreiswirth, Barry N.
name: Bartelt, Luther
name: Doligalski, Christina
Publisher: name: Springer Nature
Year: 2024

description:
Nontuberculous mycobacterium (NTM) infections are challenging to manage and are frequently non-responsive to aggressive but poorly-tolerated antibiotic therapies. Immunosuppressed lung transplant patients are susceptible to NTM infections and poor patient outcomes are common. Bacteriophages present an alternative treatment option and are associated with favorable clinical outcomes. Similarly, dual beta-lactam combinations show promise in vitro, but clinical use is sparse. We report here a patient with an uncontrolled Mycobacterium abscessus infection following a bilateral lung transplant and failed antibiotic therapy. Both smooth and rough colony morphotype strains were initially present, but treatment with two phages that kill the rough strain – including epigenetic-modification to overcome restriction – resulted in isolation of only the smooth strain. The rough and smooth strains have similar antibiotic susceptibilities suggesting that the phages specifically eliminated the rough strain. Dual beta-lactam therapy with meropenem and ceftazidime-avibactam provided further clinical improvement, and the phages act synergistically with meropenem in vitro.
Ophiomyxidae Ljungman 1867
Creators: name: Stöhr, Sabine
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Ophiuroidea
Ophiacanthida
Ophiomyxidae

description: Ophiomyxidae
- adGP bar-like, proximally flattened, no condyles
- abGP blade-like flat, thin, attached at middle of adGP
- RS articular structure a distal, denser stereom patch
description: Published as part of Stöhr, Sabine, 2024, Taxonomic analysis of the genital plates and associated structures in Ophiuroidea (Echinodermata), pp. 1-98 in European Journal of Taxonomy 933 on page 72, DOI: 10.5852/ejt.2024.933.2525, http://zenodo.org/record/11198874
Polar-Twisted, Nano-Modulated Nematics: Form Chirality and Physical Properties
Creators: name: Vanakaras, Alexandros G.
name: Photinos, Demetri J.
name: Samulski, Edward T.
Publisher: name: MDPI
Year: 2024

description:
Recently, two new polymorphs have been added to the nematic class: the polar-twisted nematic (NPT) in 2016 and the ferroelectric nematic (NF) in 2020. Comprised of achiral molecules, both exhibit local polar ordering and adopt modulated structures, right- and left-handed helical organizations—form chirality—albeit on vastly different dimensional scales; modulations have a ~10 nanometer pitch in the NPT and ~500 nm in the NF. Here, we focus on the structure and symmetries of the NPT phase and the ensuing physical properties. Based on an array of order parameters that fully describe the molecular ordering and the nano-modulations thereof, we present a consistent formulation of the dielectric, optical, surface anchoring, and elasticity properties of the NPT materials. We show that these properties are distinctly different from those associated with an elastically modulated, locally uniaxial, nematic.
Population genomics of Plasmodium ovale species in sub-Saharan Africa
Creators: name: Kashamuka, Melchior Mwandagalirwa
name: Ali, Innocent M.
name: Ishengoma, Deus S.
name: Tshefu, Antoinette
name: Popkin-Hall, Zachary R.
name: Phanzu, Fernandine
name: Moser, Kara A.
name: Muller, Meredith
name: Juliano, Jonathan J.
name: Lin, Jessica T.
name: Aydemir, Ozkan
name: Feleke, Sindew
name: Niaré, Karamoko
name: Sutherland, Colin J.
name: Ngasala, Billy
name: Parr, Jonathan B.
name: Carey-Ewend, Kelly
name: Bailey, Jeffrey A.
name: Brhane, Bokretsion G.
name: Gaither, Claudia
name: Aghakanian, Farhang
name: Kalonji, Albert
name: He, Wenqiao
name: Simkin, Alfred
name: Hennelly, Chris
Publisher: name: Springer Nature
Year: 2024

description:
Plasmodium ovale curtisi (Poc) and Plasmodium ovale wallikeri (Pow) are relapsing malaria parasites endemic to Africa and Asia that were previously thought to represent a single species. Amid increasing detection of ovale malaria in sub-Saharan Africa, we present a population genomic study of both species across the continent. We conducted whole-genome sequencing of 25 isolates from Central and East Africa and analyzed them alongside 20 previously published African genomes. Isolates are predominantly monoclonal (43/45), with their genetic similarity aligning with geography. Pow shows lower average nucleotide diversity (1.8×10−4) across the genome compared to Poc (3.0×10−4) (p < 0.0001). Signatures of selective sweeps involving the dihydrofolate reductase gene have been found in both species, as are signs of balancing selection at the merozoite surface protein 1 gene. Differences in the nucleotide diversity of Poc and Pow may reflect unique demographic history, even as similar selective forces facilitate their resilience to malaria control interventions.
Additional file 1: of Statistical and radiobiological analysis of the so-called thyroid stunning
Creators: name: Walrand, Stephan
name: Hesse, Michel
name: FranĂ§Ois Jamar
Publisher: name: Figshare
Year: 2015
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Developmental Biology

description: Prediction of the uptake reduction after a first low activity 131 I or 123 I scan observed by Hilditch et al. [ 6 ] and Lassmann et al. [ 7 ] using the thyroid cells radiosensitivity [ 26 ] jointly with the non-uniform uptake in tissue observed in 124 I PET [ 27 ]. (DOCX 102Â kb)
Toritrombicula gygis Brennan and Amerson 1971
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Toritrombicula
Toritrombicula gygis

description: Toritrombicula gygis Brennan and Amerson, 1971:
PAC
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 182, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
MOESM1 of Phantom model and scoring system to assess ability in ultrasound-guided chest drain positioning
Creators: name: Vetrugno, Luigi
name: Volpicelli, Giovanni
name: Barbariol, Federico
name: Toretti, Ilaria
name: Pompei, Livia
name: Forfori, Francesco
name: Rocca, Giorgio Della
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer

description: Additional file 1. A 9-item Case Report Form.
High-throughput genotyping of Plasmodium vivax in the Peruvian Amazon via molecular inversion probes
Creators: name: Aydemir, Özkan
name: Simkin, Alfred
name: Juliano, Jonathan J.
name: Niaré, Karamoko
name: Bailey, Jeffrey A.
name: Sanchez, Juan F.
name: Kim, Isaac E.
name: Fola, Abebe A.
name: Giesbrecht, David J.
name: Crudale, Rebecca
name: Valdivia, Hugo O.
name: Popkin-Hall, Zachary R.
name: Pannebaker, Danielle L.
Publisher: name: Springer Nature
Year: 2024

description:
Plasmodium vivax transmission occurs throughout the tropics and is an emerging threat in areas of Plasmodium falciparum decline, causing relapse infections that complicate treatment and control. Targeted sequencing for P. falciparum has been widely deployed to detect population structure and the geographic spread of antimalarial and diagnostic resistance. However, there are fewer such tools for P. vivax. Leveraging global variation data, we designed four molecular inversion probe (MIP) genotyping panels targeting geographically differentiating SNPs, neutral SNPs, putative antimalarial resistance genes, and vaccine candidate genes. We deployed these MIP panels on 866 infections from the Peruvian Amazon and identified transmission networks with clonality (IBD[identity by descent]>0.99), copy number variation in Pvdbp and multiple Pvrbps, mutations in antimalarial resistance orthologs, and balancing selection in 13 vaccine candidate genes. Our MIP panels are the broadest genotyping panel currently available and are poised for successful deployment in other regions of P. vivax transmission.
Additional file 1: of Implications of legal scrutiny processes (including the Lâ  Aquila trial and other recent court cases) for future volcanic risk governance
Creators: name: Bretton, Richard
name: Gottsmann, Joachim
name: Aspinall, Willy
name: Ryerson Christie
Publisher: name: Figshare
Year: 2015
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: Computational Biology

description: Infrastructure and Resourcing.
Tissue-Specific DNA Methylation Changes in CD8+ T Cells During Chronic Simian Immunodeficiency Virus Infection of Infant Rhesus Macaques
Creators: name: Pillay, Santhoshan
name: Del Prete, Gregory Q.
name: De Paris, Kristina
name: Fogle, Jonathan E.
name: Nag, Mukta
Publisher: name: MDPI
Year: 2024

description:
Robust CD8+ T cell responses are critical for the control of HIV infection in both adults and children. Our understanding of the mechanisms driving these responses is based largely on studies of cells circulating in peripheral blood in adults, but the regulation of CD8+ T cell responses in tissue sites is poorly understood, particularly in pediatric infections. DNA methylation is an epigenetic modification that regulates gene transcription. Hypermethylated gene promoters are associated with transcriptional silencing and, conversely, hypomethylated promoters indicate gene activation. In this study, we evaluated DNA methylation signatures of CD8+ T cells isolated from several different anatomic compartments during pediatric AIDS-virus infection by utilizing the SIVmac239/251 infected infant rhesus macaque model. We performed a stepwise methylation analysis starting with total cellular DNA, to immunomodulatory cytokine promoters, to specific CpG sites within the cytokine promoters in CD8+ T cells isolated from peripheral blood, lymph nodes, and intestinal tissue during the chronic phase of infection. Tissue-specific methylation patterns were determined for transcriptionally active promoters of key immunomodulatory cytokines: interferon gamma (IFNγ), interleukin-2 (IL-2), and tumor necrosis factor alpha (TNFα). In this study, we observed tissue-specific differences in CD8+ T cell modulation by DNA methylation in SIV-infected infant macaques, highlighting the importance of evaluating cells from both blood and tissues to obtain a complete picture of CD8+ T cell regulation during pediatric HIV infection.
Ophioscolecidae Lutken 1869
Creators: name: Stöhr, Sabine
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Ophiuroidea
Ophioscolecida
Ophioscolecidae

description: Ophioscolecidae
- oral GP oval, thin
- adGP bar-like, with simple flat articular structures
- RS (when present) with simple flat articular structure
- madreporite with large asymmetrical distal opening
description: Published as part of Stöhr, Sabine, 2024, Taxonomic analysis of the genital plates and associated structures in Ophiuroidea (Echinodermata), pp. 1-98 in European Journal of Taxonomy 933 on page 72, DOI: 10.5852/ejt.2024.933.2525, http://zenodo.org/record/11198874
Personalizing Prediction of High Opioid Use in the Neurointensive Care Unit: Development and Validation of a Stratified Risk Model for Acute Brain Injury Due to Stroke or Traumatic Brain Injury
Creators: name: Blacker, Samuel N.
name: Lele, Abhijit V.
name: Wang, Wei Yun
name: Fong, Christine T.
name: Holland, Ian C.
Publisher: name: MDPI
Year: 2024

description:
Background/Objectives: This study aimed to develop and validate a stratified risk model for predicting high opioid use in patients with acute brain injury due to stroke or traumatic brain injury (TBI) admitted to a neurocritical care intensive care unit. Methods: We examined the factors associated with the use of high-opioids (≥75th quartile, ≥17.5 oral morphine equivalent/ICU day) in a retrospective cohort study including patients with acute ischemic stroke, spontaneous intracerebral hemorrhage, spontaneous subarachnoid hemorrhage, and TBI. We then developed, trained, and validated a risk model to predict high-dose opioids. Results: Among 2490 patients aged 45–64 years (β = −0.25), aged 65–80 years (β = −0.97), and aged ≥80 years (β = −1.17), a history of anxiety/depression (β = 0.57), a history of illicit drug use (β = 0.79), admission diagnosis (β = 1.21), lowest Glasgow Coma Scale Score (GCSL) [GCSL 3–8 (β = −0.90], {GCS L 9–12 ((β = −0.34)], mechanical ventilation (β = 1.21), intracranial pressure monitoring (β = 0.69), craniotomy/craniectomy (β = 0.6), and paroxysmal sympathetic hyperactivity (β = 1.12) were found to be significant predictors of high-dose opioid use. When validated, the model demonstrated an area under the curve ranging from 0.72 to 0.82, accuracy ranging from 0.68 to 0.91, precision ranging from 0.71 to 0.94, recall ranging from 0.75 to 1, and F1 ranging from 0.74 to 0.95. Conclusions: A personalized stratified risk model may allow clinicians to predict the risk of high opioid use in patients with acute brain injury due to stroke or TBI. Findings need validation in multi-center cohorts.
PLANIFICACIÓN TERRITORIAL SOSTENIBLE Y PATRIMONIO. Presentación de los proyectos de vinculación y transferencia 2023.
Creators: name: Arboit, Mariela Edith
name: Pelagatti, Oriana
Publisher: name: Zenodo
Year: 2024
Subjects: hábitat
planificación territorial
patrimonio cultural
sostenibilidad
habitat
territorial planning
cultural heritage
sustainability

description: Presentación de resultados parciales en la reunión Proyectos de Vinculación y Transferencia / 2023 -INCIHUSA -CONICET Proyecto: Aportes científico-técnicos al proceso de creación y gestión de la Reserva Natural Municipal Lagunas del Desaguadero, La Paz, Mendoza. DESAFIO 40. ImpaCT.AR CIENCIA Y TECNOLOGÍA.

 

Presentation of partial results at the Linkage and Transfer Projects Meeting / 2023 -INCIHUSA -CONICET Project: Scientific-technical contributions to the creation and management process of the Lagunas del Desaguadero Municipal Natural Reserve, La Paz, Mendoza. CHALLENGE 40. ImpaCT.AR SCIENCE AND TECHNOLOGY.
Toritrombicula hasegawai
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Toritrombicula
Toritrombicula hasegawai

description: Toritrombicula hasegawai (Sasa, Hayashi, and Kawashima, 1953):
PAL
Trombicula (Toritrombicula) hasegawai Sasa, Hayashi and Kawashima, 1953
Toritrombicula (Toritrombicula) hasegawai, Loomis 1966c
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 182, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
A qualitative evaluation of the short and long-term impacts of an implementation science training program in South Africa
Creators: name: Kagura, Juliana
name: Chirwa, Tobias F.
name: Ojifinni, Oludoyinmola
name: Salisbury, Kathryn
name: Reed, Kristin
name: Bartels, Sophia M.
name: Shangase, Nosipho
name: Pettifor, Audrey E.
name: Ibisomi, Latifat
name: Ramaswamy, Rohit
Publisher: name: Springer Nature
Year: 2024

description:
Background As implementation science (IS) in low and middle-income country settings continues to grow and generate interest, there is continual demand for capacity building in the field. Training programs have proliferated, but evaluations of these efforts are sparse and primarily from high-income countries. There is little knowledge about the impact of IS training on students’ careers post-graduation. This evaluation of the first cohort of students who graduated from the 18-month implementation science concentration in HIV/AIDS within the Master of Science program at University of the Witwatersrand in South Africa addresses this gap. Methods We conducted two rounds of virtual interviews with the students, who were from eight African countries, immediately after the training program ended (n = 10 participants) and again five years later (n = 9 participants). The first survey captured student perceptions of IS before they entered the program and their opinions just after graduation. The follow-up evaluated their perceptions five years after graduation. Interviews were recorded, transcribed, and coded in ATLAS.ti (first round) and MAXQDA (second round), using the framework method and thematic analysis. Results Prior to the training, all students, even those with no knowledge of the field, perceived that the IS training program would help them develop skills to address critical public health priorities. These expectations were generally met by the training program, and most students reported satisfaction despite what they felt was a limited timeframe of the program and insufficient mentorship to complete their dissertation projects at their home institutions across the African continent. Five years post-graduation, most of the students did not have jobs in IS but continued applying their training in their roles and had subsequently pursued further education, some in IS-related programs. Conclusions IS training in Africa was clearly seen as valuable by trainees but IS job opportunities remain scarce. Training programs need to be more closely tied to local government priorities, and training for in-country policy and decision-makers is needed to increase demand for qualified IS researchers and practitioners.
Disseminated intravascular coagulopathy and subsequent kidney injury requiring dialysis after a second-trimester dilation and evacuation procedure.
Creators: name: Luthra, Gauri
name: Paris, Amy
name: Darivemula, Shilpa Melanie
name: Block, Clay
Publisher: name: BMJ
Year: 2024

description:
A primigravida in her 20s with a body mass index of 18 underwent dilation and evacuation at 22 and 4 weeks gestational age to manage an intrauterine fetal demise (IUFD) that had occurred 14 days ago. Hypoxaemia and vaginal bleeding developed 90 min postprocedure. Investigations demonstrated changes compatible with acute respiratory distress syndrome secondary to disseminated intravascular coagulopathy which was managed with intubation, mechanical ventilation and transfusion of blood products. Although the coagulopathy and respiratory failure resolved, severe acute kidney injury ensued resulting in acute tubular necrosis, severe labial oedema and the need for prolonged support with haemodialysis until kidney recovery 7 weeks later.
Human spinal height growth: a description of normal spine growth patterns and adult spine height prediction from a longitudinal cohort
Creators: name: Karbach, Lauren E.
name: Sanders, James O.
name: Obudzinski, Sarah E.
name: Liu, Raymond W.
name: Qiu, Xing
Publisher: name: Springer Nature
Year: 2024

description:
Purpose This study describes spinal growth and predicts future growth by standardizing timing relative to the growth spurt. Methods From a longitudinal cohort of normal, healthy children followed through their growth, we identified those who completed their growth and compared spinal heights to chronological age and timing relative to the growth spurt. Anthropometrics and radiographs were correlated to identify heights to C1, T1, and S1 using three separate methods with validation performed by comparing to heights predicted by pelvic width. Heights and spinal lengths were normalized to percentages of adult lengths, and multipliers of growth remaining determined for both age and timing relative to PHV90% (peak height velocity defined by achieving 90% of final height) as adult length divided by current spine length. The age at PHV90% is termed Peak Growth Age (PGA)90%. Results Fifty-four subjects completed their growth at the study terminus (35f, 19 m). We identified multipliers allowing calculations of adult spine length based on the child’s current timing relative to peak growth. At PHV90%, children were 90% adult total height and 87% adult spine height. During childhood, spinal growth is 1.55 ± 0.21 cm/yr in girls, 1.14 ± 0.23 cm/yr in boys increasing to 1.75 ± 0.11 cm/yr in girls and 2 ± 0.11 cm/yr in boys during the growth spurt. Conclusion This study identifies multipliers of spinal growth determination and identifies their values relative to the adolescent growth spurt timing which is known to be closely related to skeletal maturity. Timing compared to the PGA90% provides reliable predictions of final spine length for both sexes.
An electrochemical biosensor for the detection of tuberculosis specific DNA with CRISPR-Cas12a and redox-probe modified oligonucleotide
Creators: name: Abbas, Shah Rukh
name: Taufiq, Saman
name: Nagata, Madoka
name: Sode, Koji
Publisher: name: Elsevier
Year: 2024

description:
Background The development of a robust and accurate point-of-care platform for the detection of tuberculosis (TB) biomarkers is important for disease control. In the current study, the detection principle relies on the shredding of PES-modified non-specific ssDNA (Poly T) in the presence of target DNA IS6110, a reliable biomarker for TB diagnosis by the CRISPR-Cas12a mechanism. Cas protein has great potential in the detection of nucleic acids. Results Herein, we developed a biosensing platform by utilizing the trans cleavage activity of CRISPR-Cas12a into an electrochemical biosensor. Square wave voltammetry technique is used for the analysis of the fabricated biosensing platform. In the presence of target DNA, the trans cleavage activity is observed by a nonspecific ssDNA substrate, PolyT chain. Various concentration of target DNA is tested on the constructed biosensor, the fabricated biosensor successfully detected TB target DNA by trans cleavage of PES-modified poly T. This novel biosensor was able to detect the target DNA, IS6110 with the limit of detection of 14.5 nM within 60 minutes by trans-cleavage activity of CRISPR-Cas12a and the results revealed the potential of Cas12a-based biosensors as a diagnostic platform. Significance This is the first study reporting the CRISPR-Cas12a-based electrochemical sensor for TB. The developed CRISPR-Cas12a endonuclease-based electrochemical biosensor provides a potentially powerful platform for the accurate detection of Mycobacterium tuberculosis.
Additional file 1 of On the influence of interpolation method on rotation invariance in texture recognition
Creators: name: Kylberg, Gustaf
name: Ida-Maria Sintorn
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology

description: Tables for the data illustrated in Figs. 5 and 7. (PDF 108 kb)
Ophiocomidae Ljungman 1867
Creators: name: Stöhr, Sabine
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Ophiuroidea
Ophiacanthida
Ophiocomidae

description: Ophiocomoidea /
Ophiocomidae
- oral GP flat, short L-shaped
- adGP bar-like, flat, single condyle with spiral groove
- abGP boomerang-shaped
- RS with single low condyle and groove, middle denser stereom patch
- madreporite with additional distolateral wide opening
description: Published as part of Stöhr, Sabine, 2024, Taxonomic analysis of the genital plates and associated structures in Ophiuroidea (Echinodermata), pp. 1-98 in European Journal of Taxonomy 933 on pages 72-73, DOI: 10.5852/ejt.2024.933.2525, http://zenodo.org/record/11198874
Arisaema
Creators: name: Low, Yee Wen
name: Scherberich, David
name: Gusman, Guy
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Alismatales
Araceae
Arisaema

description: Key to Arisaema taxa of Peninsular Malaysia
1. Subterranean stem a subglobose tuber (up to 3.5 cm in length, 1-5 cm wide) [sect. Fimbriata]............. 2
1a. Subterranean stem an elongated rhizome (up to 15 cm long) [sect. Anomalum]........................ 4
2. Spadix-appendix long and whip-like (8-15 cm long) exceeding the spathe-limb........................................ A. fimbriatum subsp. fimbriatum
2a. Spadix-appendix short (3-5 cm long) not exceeding the spathe-limb................................. 3
3. Spathe-limb inside white at base, vivid green from the apex to the basal white portion with a thin dark purple band separating the vivid green and white zones....................................... A. laminatum
3a. Spathe-limb inside pale yellow or pale green, sometimes suffused with purple................. A. roxburghii
4. Spadix-appendix short (2-5 cm long)............. 5
4a. Spadix-appendix long (10-35 cm long)........... 7
5. Leaf pedate, with 5-7 leaflets.......... A. scortechinii
5a. Leaf trifoliolate.............................. 6
6. Spathe-tube mouth margin strongly recurved (auriculate; auricles 5-10 mm wide).............. A. anomalum
6a. Spathe-tube mouth margin straight and hardly recurved (not auriculate).................. A. brinchangense
7. Leaf with 3-5 leaflets, leaflets linear-elliptic.... A. filiforme 7a. Leaf with 7-9 leaflets, leaflets elliptic........ A. wrayi
description: Published as part of Low, Yee Wen, Scherberich, David & Gusman, Guy, 2016, Arisaema brinchangense Y. W. Low, Scherberich & Gusman (Araceae), a new threatened species endemic to the Cameron Highlands (Peninsular Malaysia), pp. 83-89 in Candollea 71 (1) on page 84, DOI: 10.15553/c2016v711a10, http://zenodo.org/record/5683613
Proton-Transfer Dynamics Regulates CO 2 Electroreduction Products via Hydrogen Coverage
Creators: name: Zhang, Sheng
name: Meyer, Thomas J.
name: Ma, Xinbin
name: Fan, Qun
name: Xiao, Tiantian
name: Chi, Haoyuan
name: Lin, Jianlong
name: Kuang, Siyu
name: Yan, Tianxiang
name: Liu, Hai
Publisher: name: American Chemical Society (ACS)
Year: 2024

description:
Electrochemical conversion of CO2 to hydrocarbons is a promising approach to carbon neutrality and energy storage. The formation of reaction intermediates involves crucial steps of proton transfer, making it essential to understand the role of protons inthe electrochemical process to control the product selectivity and elucidate the underlying catalytic reaction mechanism of the CO2 electrochemical reduction (CO2RR). In this work, we proposed a strategy to regulate product selectivities by tuning local proton transport rates through a surface resin layer over cuprous oxides. We systematically studied the influence of proton transfer rates on product selectivities by regulating the polymerization degree of resorcinol-formaldehyde resin (RF). The production of C2 compounds and CH4 could be switched through an RF coating with the maximum CH4 Faradaic efficiency of 51% achieved at current densities close to the amperage level. Both experimental and theoretical calculation results suggest that the resin layer can subtly alter proton transfer rates during the electrochemical process, thereby influencing the hydrogen coverage on catalytic sites and ultimately guiding the overall electrochemical performance toward product selectivity.
Additional file 1: of Robust optimization of SVM hyperparameters in the classification of bioactive compounds
Creators: name: Czarnecki, Wojciech
name: Podlewska, Sabina
name: Bojarski, Andrzej
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Molecular Biology
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Analysis of the time course of accuracy values during execution of the SVM optimization procedure. The file contains the analysis of the changes in accuracy values with different time for SVM optimizations strategies for all targets tested.
Ophiacanthina O'Hara, Hugall, Thuy, Stohr & Martynov 2017
Creators: name: Stöhr, Sabine
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Ophiuroidea
Ophiacanthida

description: Ophiacanthina
- oral GP rectangular
- adGP bar-like, distally thickened
description: Published as part of Stöhr, Sabine, 2024, Taxonomic analysis of the genital plates and associated structures in Ophiuroidea (Echinodermata), pp. 1-98 in European Journal of Taxonomy 933 on page 73, DOI: 10.5852/ejt.2024.933.2525, http://zenodo.org/record/11198874
Additional file: of Automated synthesis of [18F]DCFPyL via direct radiofluorination and validation in preclinical prostate cancer models
Creators: name: Bouvet, Vincent
name: Wuest, Melinda
name: Hans-Soenke Jans
name: Janzen, Nancy
name: Genady, Afaf
name: Valliant, John
name: Francois Benard
name: Wuest, Frank
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Plant Biology

description: Supplementary information. Automated synthesis of [18F]DCFPyL via direct radiofluorination and radiopharmacological evaluation in preclinical prostate cancer models. (DOCX 446 kb)