cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Spatiotemporal Receding Horizon Control with Proactive Interaction Towards Autonomous Driving in Dense Traffic
Creators: name: Zheng, Lei
name: Yang, Rui
name: Peng, Zengqi
name: Wang, Michael Yu
name: Ma, Jun
Publisher: name: arXiv
Year: 2023
Subjects: subject: Robotics (cs.RO)
subject: Systems and Control (eess.SY)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: In dense traffic scenarios, ensuring safety while keeping high task performance for autonomous driving is a critical challenge. To address this problem, this paper proposes a computationally-efficient spatiotemporal receding horizon control (ST-RHC) scheme to generate a safe, dynamically feasible, energy-efficient trajectory in control space, where different driving tasks in dense traffic can be achieved with high accuracy and safety in real time. In particular, an embodied spatiotemporal safety barrier module considering proactive interactions is devised to mitigate the effects of inaccuracies resulting from the trajectory prediction of other vehicles. Subsequently, the motion planning and control problem is formulated as a constrained nonlinear optimization problem, which favorably facilitates the effective use of off-the-shelf optimization solvers in conjunction with multiple shooting. The effectiveness of the proposed ST-RHC scheme is demonstrated through comprehensive comparisons with state-of-the-art algorithms on synthetic and real-world traffic datasets under dense traffic, and the attendant outcome of superior performance in terms of accuracy, efficiency and safety is achieved.
description: 16 pages, 13 figures, accepted for publication in IEEE Transactions on Intelligent Vehicles
Additional file 1 of Comprehensive evaluation of structural variant genotyping methods based on long-read sequencing data
Creators: name: Duan, Xiaoke
name: Pan, Mingpei
name: Fan, Shaohua
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics

description: Additional file 1: Fig. S1. Precision and recall on the simulated dataset. Fig. S2. Precision and recall on the real datasets. Table S1. Genotype contingency table on the simulated dataset. Table S2. Genotype contingency table on the HG002 Tier 1 dataset. Table S3. Genotype contingency table on the HG002 Tier 2 dataset. Table S4. Genotype contingency table on the HG005 dataset. Table S5. Impacts of aligner and sequencing data on genotyping based on HG002 Tier 2 dataset. Table S6. Impacts of aligner and sequencing data on genotyping based on HG005 dataset. Supplementary Notes
Additional file 1 of The value of a redesigned clinical course during COVID-19 pandemic: an explorative convergent mixed-methods study
Creators: name: Egilsdottir, H. Ösp
name: Heyn, Lena Günterberg
name: Brembo, Espen Andreas
name: Byermoen, Kirsten Røland
name: Moen, Anne
name: Eide, Hilde
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 1. God Reporting of A Mixed Methods Study (GRAMMS) guideline.
КИБЕРПРЕСТУПНОСТЬ КАК НОВАЯ КРИМИНАЛЬНАЯ УГРОЗА
Creators: name: Елена Олеговна Бондарь
Publisher: name: Вестник Московского университета МВД России
Year: 2020
Subjects: киберпреступность
кибербезопасность
угроза
глобализация
информационная безопасность
технологии
концепция
стратегия

description: Обращено внимание на актуальность создания государством национальных механизмов, которые позволят гарантировать информационный суверенитет в условиях все возрастающего влияния IT-индустрии на повседневную жизнь, непрекращающегося расширения сетевой аудитории и проникновения цифровых технологий в новые сферы общественного взаимодействия. Анализируется представленный для общественного обсуждения проект Концепции стратегии кибербезопасности России. Подчеркивается важность проведения международной координации научных исследований в области предотвращения и противодействия актам киберпреступности с помощью разработки новых нормативных правовых актов, специальных технологий для эффективного и быстрого раскрытия преступлений в данной области.
Additional file 1 of From science to politics: COVID-19 information fatigue on YouTube
Creators: name: Shi, Chyun-Fung
name: So, Matthew C.
name: Stelmach, Sophie
name: Earn, Arielle
name: Earn, David J. D.
name: Dushoff, Jonathan
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 1: Table 1. Coding themes. The theme usually appears right at the beginning of a video and on the headline and continues through the content. A theme is considered salient (coded as the main theme of a given video) when a video devotes more time to that theme than to others.
Additional file 2 of From science to politics: COVID-19 information fatigue on YouTube
Creators: name: Shi, Chyun-Fung
name: So, Matthew C.
name: Stelmach, Sophie
name: Earn, Arielle
name: Earn, David J. D.
name: Dushoff, Jonathan
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 2: Table2. Codedvideocountsbytheme. Thenumber(n)ofvideoswitheachtheme(percentage of total videos). The median (interquartile range) of views, likes, dislikes, and comments for videos with each theme. M denotes millions, while k denotes thousands.
Building a composable stack for research cyberinfrastructure
Creators: name: Manning, T. Andrew
name: Kooper, Rob
Publisher: name: Zenodo
Year: 2024
Subjects: subject: Computer and information sciences
subject: FOS: Computer and information sciences

description: Small to medium-sized research projects require increasingly sophisticated software stacks as the demand continues to grow for more high performance computing (HPC) resources and Kuberenetes clusters for web-based applications. Frequently these smaller projects do not have funding for dedicated DevOps engineers, and require their RSEs to perform the task of dedicated DevOps engineers. The effort required to manually provision each layer of this stack, from cluster node operating system configuration to application deployment, especially given the scarcity of RSEs, will become infeasible without force multiplying innovations. Often these tasks are done early in the project, and need to be re-learned for the next project. Additionally, the wealth of knowledge from the DevOps engineer, securing these systems and upgrading them during the project will fall on the RSE, reducing the often scarce time to develop the application even more.

We present the approach developed at NCSA to address this problem: a GitOps-based method of bootstrapping virtual computing resources and Kubernetes clusters for composable deployment of collaborative tools and services. Leveraging industry-standard software solutions we provide a free and open source foundation upon which open science can flourish, with an emphasis on decentralized applications and protocols where possible. Leveraging this infrastructure, we can add new layers on this called DecentCI [1], allowing an RSE to quickly get a complex system up and running, allowing for shared access to data, sharing ideas in forums, private messaging, websites, etc. 

Building on the knowledge gained from many projects, we have created a set of recipes allowing for a new project to be up and running in under 30 minutes. For example in the case of kubernetes, nodes will be created and configured, and clusters will be initialized with ingress controllers, secret management, storage classes etc (all of this is configurable on a per cluster basis). The clusters deployed can easily be upgraded by applying newer centrally managed modules in these clusters. New functionality added centrally can be added over time to the clusters.

During this talk we will discuss what tools are used and are centrally managed, and what tools are installed in each cluster. We will describe how an RSE can add their applications to the system and use well understood GIT workflows to deploy new applications, and work with other RSE on the project. The end goal is a system that will be decentralized and empower the RSE to get new applications to the scientists faster and securely  to help with their research.

References

T. Andrew Manning, “Embracing the (re)decentralized web for sustainable research collaboration cyberinfrastructure”, US-RSE 2023
Additional file 3 of From science to politics: COVID-19 information fatigue on YouTube
Creators: name: Shi, Chyun-Fung
name: So, Matthew C.
name: Stelmach, Sophie
name: Earn, Arielle
name: Earn, David J. D.
name: Dushoff, Jonathan
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 3: Table 3. Examples of Videos Viewed Meeting the Criteria for Inclusion from January to August 2020.
Additional file 4 of From science to politics: COVID-19 information fatigue on YouTube
Creators: name: Shi, Chyun-Fung
name: So, Matthew C.
name: Stelmach, Sophie
name: Earn, Arielle
name: Earn, David J. D.
name: Dushoff, Jonathan
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 4: Table 4. All types of sources identified and coded.
АДМИНИСТРАТИВНО-ПРАВОВОЙ СУБИНСТИТУТ ЭНЕРГЕТИЧЕСКОГО ДЕКЛАРИРОВАНИЯ
Creators: name: Глеб Николаевич Василенко
Publisher: name: Вестник Московского университета МВД России
Year: 2020
Subjects: субинститут
административное право
декларирование
энергосбережение
энергетическая эффективность
декларация

description: Представлена авторская точка зрения на административно-правовую природу энергетического декларирования и его принадлежность соответствующему административно-правовому институту.
Enhanced repetition codes for the cross-platform comparison of progress towards fault-tolerance
Creators: name: Liepelt, Milan
name: Peduzzi, Tommaso
name: Wootton, James R.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Achieving fault-tolerance will require a strong relationship between the hardware and the protocols used. Different approaches will therefore naturally have tailored proof-of-principle experiments to benchmark progress. Nevertheless, repetition codes have become a commonly used basis of experiments that allow cross-platform comparisons. Here we propose methods by which repetition code experiments can be expanded and improved, while retaining cross-platform compatibility. We also consider novel methods of analyzing the results, which offer more detailed insights than simple calculation of the logical error rate.
In vitro, fluorescence-quenching and computational studies on the interaction between lipoxygenase and 5-hydroxy-3′,4′,7-trimethoxyflavone from Lippia nodiflora L.
Creators: name: Pappu Srinivasan
name: Sudha, Arumugam
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Biological Sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Chemistry
subject: Earth and Environmental Sciences
subject: Biotechnology
subject: Pharmacology
subject: Biochemistry
subject: Biophysics

description: Lippia nodiflora L. is extensively used in traditional medicine for several medicinal purposes, including their use in inflammatory disorders. In this study, the folk use of L. nodiflora was validated using the isolated natural compound, 5-hydroxy-3′,4′,7-trimethoxyflavone (HTMF) by in vitro, fluorescence spectroscopic and molecular modeling studies with lipoxygenase (LOX), because LOX plays an essential role in inflammatory responses. In this perspective, the methanol extract and HTMF are shown to demonstrate prominent inhibitory activity against soybean lipoxygenase, with an IC50 value of 21.12 and 23.97 µg/ml, respectively. The data obtained from the spectroscopic method revealed that the quenching of intrinsic fluorescence of LOX is produced as a result of the complex formation of LOX–HTMF. The binding mode analysis of HTMF within the LOX enzyme suggested that hydrogen bond formation, hydrophobic interaction and π–π stacking could account for the binding of HTMF. Molecular dynamics results indicated the interaction of HTMF with LOX and the stability of ligand–enzyme complex was maintained throughout the simulation. The computational results are reliable with experimental facts and provided a good representation for understanding the binding mode of HTMF inside the active site of lipoxygenase enzyme.
Additional file 5 of From science to politics: COVID-19 information fatigue on YouTube
Creators: name: Shi, Chyun-Fung
name: So, Matthew C.
name: Stelmach, Sophie
name: Earn, Arielle
name: Earn, David J. D.
name: Dushoff, Jonathan
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 5: Table 5. Coded video counts by source. The number (n) of videos with each source type (percentage of total videos). The median (interquartile range) of views, likes, dislikes, and comments for videos published by each source type. M denotes millions, while k denotes thousands.
EUDAT D2.4: Report on Governance Model
Creators: name: Dovey, Matthew
name: Stokes, Paul
name: Baxter, Rob
name: Salmivalli, Riina
Publisher: name: http://b2share.eudat.eu
Year: 2016
Subjects: CDI Agreement, Governance

description: A report on Governance Models for the future EUDAT CDI covering the identified risks and benefits from a range of organisational option which recommends a final governance model, legal structure and underlying governance structure to ensure sustainability beyond the current EUDAT 2020 project.
EUDAT D2.5: Guidelines on Open Access and Restricted Data (draft)
Creators: name: Frew, Helen
name: Baxter, Rob
name: Inglis, Catherine
name: Iozzi, Maria Francesca
name: Lambert, Simon
name: Tjalsma, Heiko
Publisher: name: https://b2share.eudat.eu
Year: 2016
Subjects: EUDAT, Deliverable, Policy, personal data, GDPR

description: This report focuses on personal data as an important category of restricted data, and looks in particular at the legal requirements, both current and future, on EUDAT service providers storing and processing personal data. Guidelines and recommendations for EUDAT service providers are made on the basis of the newly-agreed EU General Data Protection Regulation (GDPR). A second version of this report will extend guidelines to cover broader categories of restricted data.
EUDAT D3.2: Detailed Plan for Training Activities in Months 13 – 36
Creators: name: Grootveld, Marjan
name: Garavelli, Sara
name: Van Horik, René
Publisher: name: https://b2share.eudat.eu
Year: 2016
Subjects: EUDAT, Deliverable, EUDAT stakeholders, researcher, research community & research infrastructure engagement, communication and outreach, EUDAT and B2 service training, data lifecycle, KPIs and metrics

description: This document outlines the EUDAT training plan for the second and third year of EUDAT2020 (March 2016 – Feb 2018), including a description of the various target audiences for training the training formats, as well a reflection on EUDAT training events in the first year of the project (March 2015 – Feb 2016).
Additional file 6 of From science to politics: COVID-19 information fatigue on YouTube
Creators: name: Shi, Chyun-Fung
name: So, Matthew C.
name: Stelmach, Sophie
name: Earn, Arielle
name: Earn, David J. D.
name: Dushoff, Jonathan
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 6: Table 6. Aggregate characteristics of all coded videos.
EUDAT D4.3: Service Uptake within Communities
Creators: name: Broeder, Daan
name: Stehouwer, Herman
Publisher: name: https://b2share.eudat.eu
Year: 2016
Subjects: EUDAT, Deliverable, Research community, requirements, service uptake

description: Deliverable D4.3 reports on the progress and achievements of WP4 in the first 12 months of EUDAT2020 with respect to task 4.2 “Service Uptake”. It describes the administrative infrastructure for the uptake of the EUDAT services by the research communities associated with EUDAT and the communities’ plans for the uptake processes. The communities include both core communities that have been collaborating with EUDAT in the longer term and communities that have become involved with EUDAT more recently via Data Pilot studies. This deliverable also contains an analysis of the proposals and plans resulting from the first EUDAT Call for Collaboration, and discusses feedback from research communities, including additional requirements for new functions and new or augmented EUDAT services.
НЕКОТОРЫЕ ЗАДАЧИ ПРОФЕССИОНАЛЬНОЙ ПОДГОТОВКИ КАДРОВ ОРГАНОВ ВНУТРЕННИХ ДЕЛ РОССИЙСКОЙ ФЕДЕРАЦИИ
Creators: name: Батор Цыдендамбаевич Жалсанов
Publisher: name: Вестник Московского университета МВД России
Year: 2020
Subjects: кадровое обеспечение
задачи
подготовка кадров
законодательство Российской Федерации
МВД России

description: Рассматривается необходимость совершенствования образовательного процесса подготовки сотрудников органов внутренних дел с учетом современных требований к подготовке кадров МВД России. Обосновывается необходимость многоуровневой подготовки сотрудников органов внутренних дел, способной увеличить значимость современной политики МВД России в сфере подготовки кадров.
АДМИНИСТРАТИВНО-ПРАВОВОЙ ЗАПРЕТ НА УПРАВЛЕНИЕ ТРАНСПОРТНЫМИ СРЕДСТВАМИ В БОЛЕЗНЕННОМ И УТОМЛЕННОМ СОСТОЯНИИ
Creators: name: Владимир Вячеславович Журавлев
Publisher: name: Вестник Московского университета МВД России
Year: 2020
Subjects: управление транспортным средством
болезненное и утомленное состояние
нарушение ПДД
ответственность
профилактика дорожно-транспортных происшествий

description: Рассматриваются вопросы правовой регламентации запретов на управление транспортными средствами в состояниях, создающих угрозу безопасности дорожного движения. Анализируется комплекс мер, направленных на профилактику дорожно-транспортных происшествий, причиной которых является болезненное или утомленное состояние водителя.
Additional file 1 of Effects of soil properties and carbon substrates on bacterial diversity of two sunflower farms
Creators: name: Nwachukwu, Blessing Chidinma
name: Ayangbenro, Ayansina Segun
name: Babalola, Olubukola Oluranti
Publisher: name: figshare
Year: 2022
Subjects: subject: Microbiology
subject: FOS: Biological sciences

description: Additional file 1: Figure S1. The influence of pH, total N (%) and OM (%) on sunflower rhizosphere and bulk soils obtained from Ditsobottla and Kraaipan farms using Canonical correspondence analysis. N nitrate; % percentage; OM organic matter; R1 Ditsobottla rhizosphere soil; B1 Ditsobottla bulk soil; R2 Kraaipan rhizosphere soil; B2 Kraaipan bulk soil. Figure S2. Effects of soil type on soil functional properties as measured for distilled water (basal respiration) and sum of the individual respiration rate of the 11 carbon substrates (total respiration) used in the CLPP assay. Number of replicates (n) = 2. R1 Ditsobottla rhizosphere soil; B1 Ditsobottla bulk soil; R2 Kraaipan rhizosphere soil; B2 Kraaipan bulk soil. Figure S3. The influence of pH, total N (%) and OM (%) on carbon substrate utilization by bacterial components of sunflower rhizosphere and bulk soils obtained from Ditsobottla and Kraaipan farms using canonical correspondence analysis. N nitrate; % percentage; OM organic matter.
IPA: Inference Pipeline Adaptation to Achieve High Accuracy and Cost-Efficiency
Creators: name: Ghafouri, Saeid
name: Razavi, Kamran
name: Salmani, Mehran
name: Sanaee, Alireza
name: Lorido-Botran, Tania
name: Wang, Lin
name: Doyle, Joseph
name: Jamshidi, Pooyan
Publisher: name: arXiv
Year: 2023
Subjects: subject: Distributed, Parallel, and Cluster Computing (cs.DC)
subject: Machine Learning (cs.LG)
subject: Performance (cs.PF)
subject: FOS: Computer and information sciences

description: Efficiently optimizing multi-model inference pipelines for fast, accurate, and cost-effective inference is a crucial challenge in machine learning production systems, given their tight end-to-end latency requirements. To simplify the exploration of the vast and intricate trade-off space of latency, accuracy, and cost in inference pipelines, providers frequently opt to consider one of them. However, the challenge lies in reconciling latency, accuracy, and cost trade-offs. To address this challenge and propose a solution to efficiently manage model variants in inference pipelines, we present IPA, an online deep learning Inference Pipeline Adaptation system that efficiently leverages model variants for each deep learning task. Model variants are different versions of pre-trained models for the same deep learning task with variations in resource requirements, latency, and accuracy. IPA dynamically configures batch size, replication, and model variants to optimize accuracy, minimize costs, and meet user-defined latency Service Level Agreements (SLAs) using Integer Programming. It supports multi-objective settings for achieving different trade-offs between accuracy and cost objectives while remaining adaptable to varying workloads and dynamic traffic patterns. Navigating a wider variety of configurations allows \namex{} to achieve better trade-offs between cost and accuracy objectives compared to existing methods. Extensive experiments in a Kubernetes implementation with five real-world inference pipelines demonstrate that IPA improves end-to-end accuracy by up to 21% with a minimal cost increase. The code and data for replications are available at https://github.com/reconfigurable-ml-pipeline/ipa.
Foundational competencies of an RSE: state of the project and what comes next
Creators: name: Thiele, Jan Philipp
Publisher: name: Zenodo
Year: 2024

description: Building on discussions first started at the German RSE conference in 2023 (de-RSE23), a recent pre-print, Foundational Competencies and Responsibilities of a Research Software Engineer, identifies a set of core competencies required for RSEng and describes possible pathways of development and specialisation for RSEs. It is the first output of a group with broad interests in the teaching and learning of RSEng skills.

With continuing growth in RSE communities around the world, and sustained global demand for RSEng skills, US-RSE24 presents an opportunity to align international efforts towards

* training the next generation of RSEs * providing high-quality professional development opportunities to those already following the career path * empowering RSE Leaders to further advocate for the Research Software Engineering needs and expertise in their teams, institutions, and communities.

Therefore, we want to give an overview of what the group has been working on so far, discuss the aims of our future work, and invite members of the international RSE community to contribute and provide feedback. We particularly encourage members of regional groups focused on RSEng training and skills to attend and share their perspectives.
Context Counts: How Learners' Contexts influence learning in a MOOC.
Creators: name: Hood, Nina
name: Milligan, Colin
name: Littlejohn, Allison
Publisher: name: figshare
Year: 2015
Subjects: Education

description: Abstract from paper accepted for C&E. This work arose out of our research on a MOOC entitled Introduction to Data Science offered by Coursera.
Salts of 5-amino-2-sulfonamide-1,3,4-thiadiazole, a structural and analog of acetazolamide, show interesting carbonic anhydrase inhibitory properties, diuretic, and anticonvulsant action
Creators: name: Diaz, Jorge R. A.
name: Camí, Gerardo Enrique
name: Liu-González, Malva
name: Vega, Daniel R.
name: Vullo, Daniela
name: Juárez, Américo
name: Pedregosa, José C.
name: Supuran, Claudiu T.
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Inorganic Chemistry
subject: 60506 Virology

description: Three salts of 5-amino-2-sulfonamide-1,3,4-thiadiazole (Hats) were prepared and characterized by physico-chemical methods. The p-toluensulfonate, the methylsulfonate, and the chlorhydrate monohydrate salts of Hats were evaluated as carbonic anhydrase (CA, EC 4.2.1.1) inhibitors (CAIs) and as anticonvulsants and diuretics, since many CAIs are clinically used as pharmacological agents. The three Hats salts exhibited diuretic and anticonvulsant activities with little neurotoxicity. The human (h) isoforms hCA I, II, IV, VII, IX, and XII were inhibited in their micromolar range by these salts, whereas pathogenic beta and gamma CAs showed similar, weak inhibitory profiles.
Additional file 2 of Effects of soil properties and carbon substrates on bacterial diversity of two sunflower farms
Creators: name: Nwachukwu, Blessing Chidinma
name: Ayangbenro, Ayansina Segun
name: Babalola, Olubukola Oluranti
Publisher: name: figshare
Year: 2022
Subjects: subject: Microbiology
subject: FOS: Biological sciences

description: Additional file 2: Table S1. Agricultural history of Ditsobottla and Kraaipan farms. Table S2. Forward selection of soil physio-chemical components that best described difference in bacterial components between sunflower rhizosphere and bulk soils of Ditsobottla and Kraaipan farms. Table S3. Forward selection of soil carbon substrates that best described difference in bacterial components between sunflower rhizosphere and bulk soils of Ditsobottla and Kraaipan farms. Table S4. Forward selection of soil physio-chemical components that best described difference in carbon substrate utilization between sunflower rhizosphere and bulk soils of Ditsobottla and Kraaipan farms.
Shielded alkyl-functionalised rotaxane host cavities for improved anion recognition
Creators: name: Gilday, Lydia C.
name: White, Nicholas G.
name: Beer, Paul D.
Publisher: name: Taylor & Francis
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences

description: The synthesis and anion recognition properties of four novel [2]rotaxane host architectures containing additional alkyl functionality integrated within macrocyclic and axle components to shield the binding cavity from the solvent are described. The rotaxane species containing a tetra(methyl)-functionalised macrocycle component is found to be a weaker anion complexant than the equivalent unfunctionalised receptor, which is likely due to steric hindrance restricting the anion's access to the interlocked cavity. Rotaxane molecules containing tetra(methyl)-functionalised axle components are also investigated, and the additional alkyl functionality serves to enhance anion binding affinity and selectivity when incorporated within the axle's flexible ethylene linkages. Moreover, the equivalent unfunctionalised rotaxane displays a rare preference for oxoanions over chloride guest species.
Chemical constituents and antioxidant activity of essential oil and organic extract from the peel and kernel parts of Citrus japonica Thunb. (kumquat) from Iran
Creators: name: Amrah Nouri
name: Shafaghatlonbar, Ali
Publisher: name: Taylor & Francis
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: Plant Biology

description: The constituents of essential oils and organic extracts from peel and kernels of Citrus japonica were analysed by GC and GC/MS. The content of essential oil in peel and kernel was 1.1 and 0.8% based on dry weight. The essential oil of C. japonica peel and kernel was characterised by a higher amount of limonene (51.0 and 47.1%) and germacrene D (12.1 and 6.3%), and the hexane extracts of its peel and kernel were characterised by a higher amount of dodecanol-1(12.9 and 20.8%) and linolenic acid (13.1 and 16.3%), respectively. The antioxidant activities of oils were evaluated by 1,1-diphenyl-2-picrylhydrazyl (DPPH) method. The results indicate that both oils from different parts of C. japonica possess considerable antioxidant activity. The fruit peel and kernel essential oil could thus be useful in the industries, chiefly in the food and pharmaceutical industries.
Additional file 1 of Effect of antisecretory factor, given as a food supplement to adult patients with severe traumatic brain injury (SASAT): protocol for an exploratory randomized double blind placebo-controlled trial
Creators: name: Cederberg, David
name: Harrington, Bradley M.
name: Vlok, Adriaan Johannes
name: Siesjö, Peter
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Neuroscience
subject: Pharmacology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1. Full research protocol.
Chemical constituents and antioxidant activity of essential oil and organic extract from the peel and kernel parts of Citrus japonica Thunb. (kumquat) from Iran
Creators: name: Amrah Nouri
name: Shafaghatlonbar, Ali
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: Plant Biology

description: The constituents of essential oils and organic extracts from peel and kernels of Citrus japonica were analysed by GC and GC/MS. The content of essential oil in peel and kernel was 1.1 and 0.8% based on dry weight. The essential oil of C. japonica peel and kernel was characterised by a higher amount of limonene (51.0 and 47.1%) and germacrene D (12.1 and 6.3%), and the hexane extracts of its peel and kernel were characterised by a higher amount of dodecanol-1(12.9 and 20.8%) and linolenic acid (13.1 and 16.3%), respectively. The antioxidant activities of oils were evaluated by 1,1-diphenyl-2-picrylhydrazyl (DPPH) method. The results indicate that both oils from different parts of C. japonica possess considerable antioxidant activity. The fruit peel and kernel essential oil could thus be useful in the industries, chiefly in the food and pharmaceutical industries.
Additional file 1 of Mapping of major tectonic lineaments across Cameroon using potential field data
Creators: name: Cheunteu Fantah, Cyrille Armel
name: Mezoue, Cyrille Adiang
name: Mouzong, Marcelin Pemi
name: Tokam Kamga, Alain Pierre
name: Nouayou, Robert
name: Nguiya, Severin
Publisher: name: figshare
Year: 2022
Subjects: subject: Geophysics
subject: FOS: Earth and related environmental sciences

description: Additional file 1: Table S1. Orientation and depths of the various segments of lineaments derived from gravity data. Table S2. Characteristic orientation and depths of different segments of magnetic lineaments.
The method used to culture host cells (Sf9 cells) can affect the qualities of baculovirus budding particles expressing recombinant proteins
Creators: name: Mori, Takaaki
name: Tomita, Masahiro
name: Hattori, Tomomi
name: Nakanishi, Kohei
name: Tsumoto, Kanta
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: 60506 Virology
subject: FOS: Biological sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Hematology
subject: Biological Sciences
subject: Ecology
subject: Chemistry
subject: Earth and Environmental Sciences
subject: Evolutionary Biology
subject: Biotechnology
subject: Physiology
subject: Cell Biology
subject: Microbiology
subject: Biochemistry

description: Budded virus (BV) particles of baculovirus (Autographa californica nucleopolyhedrovirus, AcNPV) are harvested from the supernatant of liquid culture of Sf9 host cells by ultracentrifugation. Using polyacrylamide gel electrophoresis, Western blot and transmission electron microscopy (TEM) of BV samples fractionated closely by sucrose density gradient centrifugation, we observed that BVs exhibited different qualities depending on whether they had been harvested from the supernatant from a standing (static), shaking (suspension), or standing/shaking (pre-/post-infection) culture of Sf9 cells. The amount of BV protein apparently increased in the order of standing, standing/shaking, and shaking procedure, and the yield of intact particles showed an opposite trend. TEM observation clearly showed that appropriate fractions of the standing and standing/shaking cultures contained more intact BV particles than those from the shaking culture. These results suggest that the qualities of recombinant BV particles may be related to the culture conditions of the host cells.
Additional file 1 of Improving access to pre-exposure prophylaxis for adolescent girls and young women: recommendations from healthcare providers in eastern Zimbabwe
Creators: name: Skovdal, Morten
name: Magoge-Mandizvidza, Phyllis
name: Dzamatira, Freedom
name: Maswera, Rufurwokuda
name: Nyamukapa, Constance
name: Thomas, Ranjeeta
name: Mugurungi, Owen
name: Gregson, Simon
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Science Policy

description: Additional file 1. Topic guide for in-depth interviews with health service providers.
Shielded alkyl-functionalised rotaxane host cavities for improved anion recognition
Creators: name: Gilday, Lydia C.
name: White, Nicholas G.
name: Beer, Paul D.
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Biophysics
subject: Biochemistry
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences

description: The synthesis and anion recognition properties of four novel [2]rotaxane host architectures containing additional alkyl functionality integrated within macrocyclic and axle components to shield the binding cavity from the solvent are described. The rotaxane species containing a tetra(methyl)-functionalised macrocycle component is found to be a weaker anion complexant than the equivalent unfunctionalised receptor, which is likely due to steric hindrance restricting the anion's access to the interlocked cavity. Rotaxane molecules containing tetra(methyl)-functionalised axle components are also investigated, and the additional alkyl functionality serves to enhance anion binding affinity and selectivity when incorporated within the axle's flexible ethylene linkages. Moreover, the equivalent unfunctionalised rotaxane displays a rare preference for oxoanions over chloride guest species.
Foundational Competencies of an RSE: State of the project and what comes next
Creators: name: Thiele, Jan Philipp
name: Goth, Florian
name: Hodges, Toby
Publisher: name: Zenodo
Year: 2024

description: Building on discussions first started at the German RSE conference in 2023 (de-RSE23), a recent pre-print, Foundational Competencies and Responsibilities of a Research Software Engineer, identifies a set of core competencies required for RSEng and describes possible pathways of development and specialisation for RSEs. It is the first output of a group with broad interests in the teaching and learning of RSEng skills.

With continuing growth in RSE communities around the world, and sustained global demand for RSEng skills, US-RSE24 presents an opportunity to align international efforts towards

training the next generation of RSEs

providing high-quality professional development opportunities to those already following the career path

empowering RSE Leaders to further advocate for the Research Software Engineering needs and expertise in their teams, institutions, and communities.

Therefore, we want to give an overview of what the group has been working on so far, discuss the aims of our future work, and invite members of the international RSE community to contribute and provide feedback. We particularly encourage members of regional groups focused on RSEng training and skills to attend and share their perspectives.
Additional file 2 of Clinical features and treatment response to differentiate idiopathic peritonitis from non-strangulating intestinal infarction of the pelvic flexure associated with Strongylus vulgaris infection in the horse
Creators: name: Hedberg-Alm, Ylva
name: Tydén, Eva
name: Tamminen, Lena-Mari
name: Lindström, Lisa
name: Anlén, Karin
name: Svensson, Maria
name: Riihimäki, Miia
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Physiology
subject: Pharmacology
subject: Biotechnology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Computational Biology

description: Additional file 2: Suppl. Figure 1. Cluster analysis. Suppl. Figure 2 a. Boxplot of total white blood cell count. Suppl. Figure 2 b. Boxplot of total neutrophil count.
Electrical conductivity of warm neutron star crust in magnetic fields: Neutron-drip regime
Creators: name: Harutyunyan, Arus
name: Sedrakian, Armen
name: Gevorgyan, Narine T.
name: Hayrapetyan, Mekhak V.
Publisher: name: arXiv
Year: 2023
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We compute the anisotropic electrical conductivity tensor of the inner crust of a compact star at non-zero temperature by extending a previous work on the conductivity of the outer crust. The physical scenarios, where such crust is formed, involve proto-neutron stars born in supernova explosions, binary neutron star mergers and accreting neutron stars. The temperature-density range studied covers the transition from a non-degenerate to a highly degenerate electron gas and assumes that the nuclei form a liquid, i.e., the temperature is above the melting temperature of the lattice of nuclei. The electronic transition probabilities include (a) the dynamical screening of electron-ion interaction in the hard-thermal-loop approximation for the QED plasma, (b) the correlations of the ionic component in a one-component plasma, and (c) finite nuclear size effects. The conductivity tensor is obtained from the Boltzmann kinetic equation in relaxation time approximation accounting for the anisotropies introduced by a magnetic field. The sensitivity of the results towards the matter composition of the inner crust is explored by using several compositions of the inner crust which were obtained using different nuclear interactions and methods of solving the many-body problem. The standard deviation of relaxation time and components of the conductivity tensor from the average are below $\le 10\%$ except close to crust-core transition, where non-spherical nuclear structures are expected. Our results can be used in dissipative magneto-hydrodynamics (MHD) simulations of warm compact stars.
description: 13 pages, 13 figures, 5 tables
EUDAT D4.5: Data and Computing Landscape Characteristics and Scientific Communities’ Environment & Requirements (update)
Creators: name: Broeder, Daan
name: Du Toit, Leon
name: Meyer, Jörg
name: Bot, Jan
Publisher: name: https://b2share.eudat.eu
Year: 2016
Subjects: EUDAT, Deliverable, Communities, Interviews, Analysis

description: D4.5 reports on the findings of 14 face-to-face interviews and 10 desktop analyses in the form of a landscape study. Community specific analysis reports are summarised according to generic community features and compared within different scientific disciplines. We evaluate trends across these disciplines too. Findings with respect to EUDAT services and the EUDAT organization are extracted and discussed. A chapter on research libraries in Europe sets out trends in data management to which EUDAT can respond. We conclude by considering how to evolve the analysis methodology to be in tune with similar efforts.
Multidomain transformer-based deep learning for early detection of network intrusion
Creators: name: Liu, Jinxin
name: Simsek, Murat
name: Nogueira, Michele
name: Kantarci, Burak
Publisher: name: arXiv
Year: 2023
Subjects: subject: Cryptography and Security (cs.CR)
subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: Timely response of Network Intrusion Detection Systems (NIDS) is constrained by the flow generation process which requires accumulation of network packets. This paper introduces Multivariate Time Series (MTS) early detection into NIDS to identify malicious flows prior to their arrival at target systems. With this in mind, we first propose a novel feature extractor, Time Series Network Flow Meter (TS-NFM), that represents network flow as MTS with explainable features, and a new benchmark dataset is created using TS-NFM and the meta-data of CICIDS2017, called SCVIC-TS-2022. Additionally, a new deep learning-based early detection model called Multi-Domain Transformer (MDT) is proposed, which incorporates the frequency domain into Transformer. This work further proposes a Multi-Domain Multi-Head Attention (MD-MHA) mechanism to improve the ability of MDT to extract better features. Based on the experimental results, the proposed methodology improves the earliness of the conventional NIDS (i.e., percentage of packets that are used for classification) by 5x10^4 times and duration-based earliness (i.e., percentage of duration of the classified packets of a flow) by a factor of 60, resulting in a 84.1% macro F1 score (31% higher than Transformer) on SCVIC-TS-2022. Additionally, the proposed MDT outperforms the state-of-the-art early detection methods by 5% and 6% on ECG and Wafer datasets, respectively.
description: 6 pages, 7 figures, 3 tables, IEEE Global Communications Conference (Globecom) 2023
EUDAT D4.4: Activity Report, year 1
Creators: name: Broeder, Daan
name: Wittenburg, Peter
name: Stehouwer, Herman
name: Le Franc, Yann
name: Hanahoe, Hilary
Publisher: name: https://b2share.eudat.eu
Year: 2016
Subjects: EUDAT, Deliverable, Community Engagement, EUDAT User Forum, Call for Collaboration, RDA, ESFRI

description: Deliverable D4.4 reports on the progress and achievements of WP4 in the first 12 months of EUDAT2020 with respect to task 4.3 “Community Engagement” and task 4.4 “External Research & Standard Organizations Liaison”. It describes the start of the EUDAT working group process for this phase of the project, the first Call for Collaboration and the first EUDAT User Forum run by this second phase of EUDAT. In addition, EUDAT’s contacts with the RDA and the ESFRI clusters are described.
EUDAT D4.6: Service Uptake within Communities (update)
Creators: name: Broeder, Daan
name: Testi, Debora
name: Zastrow, Thomas
Publisher: name: https://b2share.eudat.eu
Year: 2017
Subjects: EUDAT, Deliverable, Research community, requirements, service uptake

description: Deliverable D4.6 reports on the progress with respect to the communities’ uptake of EUDAT services and the work done with respect to the communities’ requirements for service building, service extensions and service provisioning that have been analyzed from the community service uptake plans and the Data Pilot proposal.
D4.6 builds on the reporting done earlier in D4.3 about the administrative process of requirements extraction and analysis.
Additional file 3 of Clinical features and treatment response to differentiate idiopathic peritonitis from non-strangulating intestinal infarction of the pelvic flexure associated with Strongylus vulgaris infection in the horse
Creators: name: Hedberg-Alm, Ylva
name: Tydén, Eva
name: Tamminen, Lena-Mari
name: Lindström, Lisa
name: Anlén, Karin
name: Svensson, Maria
name: Riihimäki, Miia
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Physiology
subject: Pharmacology
subject: Biotechnology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Computational Biology

description: Additional file 3: Suppl. Table 1a. Comparison of demographic data between non-strangulating infarction cases (NSII) and idiopathic cases using, for quantitative measures, the Kruskal-Wallis Rank Sum Test (non-parametric method) and, for qualitative variables, the Fisher exact test (due to small number of observations).