cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Synthesis of three new binuclear Mn complexes: characterization and DNA binding and cleavage properties
Creators: name: Kou, Ying-Ying
name: Zhao, Qian
name: Wang, Xue-Rao
name: Li, Mei-Ling
name: Ren, Xiang-Hao
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified

description: A series of novel binuclear Mn complexes, [Mn2(L1)2]·2DMF (1), [Mn2O(L2)2](ClO4)2·CH3OH (2), and [Mn2(L3)2Cl2]·2DMF (3), were synthesized and structurally characterized by single-crystal X-ray diffraction. Moreover, their DNA-binding and cleavage properties were investigated. Characterization of the complexes by electron absorption and fluorescence spectroscopy confirmed the binding to calf-thymus DNA (CT-DNA). The apparent binding constants (K
app) for 1, 2, and 3 were determined as 7.06 × 105, 1.10 × 105, and 3.77 × 105 M−1, respectively, indicating intermediate-strength binding between the complexes and CT-DNA. Moreover, 2 exhibited static fluorescence quenching, while 1 and 3 displayed dynamic fluorescence quenching. Agarose gel electrophoresis studies of the complexes revealed that only 2 exhibits chemical nuclease activity in the absence of a redox agent. When H2O2 was added as the redox agent, 3 was still unable to cleave DNA; however, 1 showed chemical nuclease activity and the activity of 2 was enhanced. The cleavage mechanism exerted by the complexes on plasmid DNA is likely to involve oxidative cleavage processes with hydroxyl radicals (·OH) and singlet oxygen (1O2) as the active species.
Onthophagus surmelii Petrovitz 1963
Creators: name: Bezděk, Aleš
name: Hájek, Jiří
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Onthophagus
Onthophagus surmelii

description: Onthophagus surmelii Petrovitz, 1963
 Onthophagus sürmelii Petrovitz, 1963: p. 236, Figs 2–4.
Two paratypes are deposited in NMPC (ex coll. V. Balthasar):
PARATYPE (J): ‘ Isparta [p] // Asia minor / leg. Petrovitz [p] // PARATYPUS [p, red label] // J [p] // O. sürmelii n. / Petrovitz [p]’.
PARATYPE (J): ‘Bulgar-dag: Namrun / leg. Petrovitz - Ressl [p] // PARATYPUS [p, red label] // O. sürmelii n. / Petrovitz [p] // ♀ [p]’.
 Current status. Onthophagus (Palaeonthophagus) surmelii Petrovitz, 1963, see, e.g. BARAUD (1992).
 Remark. The species-group name was dedicated to Turk Yilmaz Sürmeli (PETROVITZ 1963), thus its original spelling ‘sürmelii’ should be corrected to ‘surmelii’ (ICZN 1999: Art. 32.5.2) and not to ‘suermelii’ as applied by BARAUD (1992), KABAKOV (2006), MARTÍN- PIERA & ZUNINO (1985, 1986), LÖBL et al. (2006) and ZIANI et al. (2011).
description: Published as part of Bezděk, Aleš & Hájek, Jiří, 2013, Catalogue of type specimens of beetles (Coleoptera) deposited in the National Museum, Prague, Czech Republic, pp. 387-442 in Acta Entomologica Musei Nationalis Pragae 53 (1) on page 423, DOI: 10.5281/zenodo.5739743
Self-Attention Networks for Connectionist Temporal Classification in Speech Recognition
Creators: name: Salazar, Julian
name: Kirchhoff, Katrin
name: Huang, Zhiheng
Publisher: name: arXiv
Year: 2019
Subjects: subject: Audio and Speech Processing (eess.AS)
subject: Computation and Language (cs.CL)
subject: Machine Learning (cs.LG)
subject: Sound (cs.SD)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Computer and information sciences

description: The success of self-attention in NLP has led to recent applications in end-to-end encoder-decoder architectures for speech recognition. Separately, connectionist temporal classification (CTC) has matured as an alignment-free, non-autoregressive approach to sequence transduction, either by itself or in various multitask and decoding frameworks. We propose SAN-CTC, a deep, fully self-attentional network for CTC, and show it is tractable and competitive for end-to-end speech recognition. SAN-CTC trains quickly and outperforms existing CTC models and most encoder-decoder models, with character error rates (CERs) of 4.7% in 1 day on WSJ eval92 and 2.8% in 1 week on LibriSpeech test-clean, with a fixed architecture and one GPU. Similar improvements hold for WERs after LM decoding. We motivate the architecture for speech, evaluate position and downsampling approaches, and explore how label alphabets (character, phoneme, subword) affect attention heads and performance.
description: Accepted to ICASSP 2019
Additional file 1 of Psychometric properties of instruments to measure parenting practices and children’s movement behaviors in low-income families from Brazil
Creators: name: Goncalves, Widjane Sheila Ferreira
name: Byrne, Rebecca
name: de Lira, Pedro Israel Cabral
name: Viana, Marcelo Tavares
name: Trost, Stewart G.
Publisher: name: figshare
Year: 2021
Subjects: subject: Space Science
subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1.
Additional file 2: of The genetic architecture of phosphorus efficiency in sorghum involves pleiotropic QTL for root morphology and grain yield under low phosphorus availability in the soil
Creators: name: Bernardino, Karine
name: Pastina, Maria
name: Cícero Menezes
name: Sousa, Sylvia
name: Laiane Maciel
name: Geraldo Jr
name: Guimarães, Claudia
name: Barros, Beatriz
name: Silva, Luciano Costa E
name: Carneiro, Pedro
name: Schaffert, Robert
name: Kochian, Leon
name: Jurandir Magalhaes
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Correlations and p-values among all traits assessed in low-P conditions. (field and hydroponics). (DOCX 30 kb)
Additional file 4 of Pregnant women’s experiences of social distancing behavioural guidelines during the Covid-19 pandemic ‘lockdown’ in the UK, a qualitative interview study
Creators: name: Anderson, Emma
name: Brigden, Amberly
name: Davies, Anna
name: Shepherd, Emily
name: Ingram, Jenny
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 4. Pregnant in a Pandemic: Summary report for midwives. Report from initial rapid analysis, produced for maternity staff to accompany dissemination of infographic to two local maternity teams.
Onthophagus susterai Balthasar 1952
Creators: name: Bezděk, Aleš
name: Hájek, Jiří
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Onthophagus
Onthophagus susterai

description: Onthophagus susterai Balthasar, 1952
 Onthophagus šusterai Balthasar, 1952a: 225.
The holotype is deposited in NMPC (ex coll. V. Balthasar):
HOLOTYPE (J): ‘Kuatun (2300m) 27,40n. Br. / 117,40ö. L. J. Klapperich / 30.4. 1938 (Fukien) [p, violet label] // Typus [hw, red label, black frame] // Onthophagus / šusterai / Typ! n.sp. [hw] / Dr. V. Balthasar det. [p]’.
 Current status. Onthophagus (Gibbonthophagus) susterai Balthasar, 1952, see KABAKOV (1998b).
 Remark. Type status of this specimen is unclear. According to the primary description, the holotype was collected in ‘prov. Foukien, IV. 1911, G. Siemssen’. Nevertheless, the identification label is authentic, written by Balthasar himself.
description: Published as part of Bezděk, Aleš & Hájek, Jiří, 2013, Catalogue of type specimens of beetles (Coleoptera) deposited in the National Museum, Prague, Czech Republic, pp. 387-442 in Acta Entomologica Musei Nationalis Pragae 53 (1) on page 423, DOI: 10.5281/zenodo.5739743
Ground state energy of a non-integer number of particles with delta attractive interactions
Creators: name: Brunet, Eric
name: Derrida, Bernard
Publisher: name: arXiv
Year: 2000
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: We show how to define and calculate the ground state energy of a system of quantum particles with delta attractive interactions when the number of particles n$is non-integer. The question is relevant to obtain the probability distribution of the free energy of a directed polymer in a random medium. When one expands the ground state energy in powers of the interaction, all the coefficients of the perturbation series are polynomials in n, allowing to define the perturbation theory for non-integer n. We develop a procedure to calculate all the cumulants of the free energy of the directed polymer and we give explicit, although complicated, expressions of the first three cumulants.
description: 11 pages, no figure
Additional file 2 of Parental genomes segregate into distinct blastomeres during multipolar zygotic divisions leading to mixoploid and chimeric blastocysts
Creators: name: De Coster, Tine
name: Masset, Heleen
name: Tšuiko, Olga
name: Catteeuw, Maaike
name: Zhao, Yan
name: Dierckxsens, Nicolas
name: Aparicio, Ainhoa Larreategui
name: Dimitriadou, Eftychia
name: Debrock, Sophie
name: Peeraer, Karen
name: de Ruijter-Villani, Marta
name: Smits, Katrien
name: Van Soom, Ann
name: Vermeesch, Joris Robert
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2: Figure S2. Analysis of blastomeres following multipolar zygotic division. A) Interpretation of haplarithm plots. Overview of chromosome-wise haplarithm patterns for distinct genomic constitutions (i.e. biparental disomy, paternal monosomy and paternal meiotic/dispermic uniparental heterodisomy). Corresponding whole-genome errors (i.e. biparental diploid or androgenetic) are characterized by the manifestation of those patterns throughout the (majority of the) genome. Defined single-cell BAF values of the segmented P1, P2, M1 and M2, form haplotype blocks, demarcated by pairwise breakpoints, i.e., homologous recombinations. Haplotype blocks, as well as the distance between the P1-P2 or M1-M2 in the paternal and maternal haplarithm, respectively, and the positioning of homologous recombinations, denote the origin and nature of copy number. The normalized LogR- values are integrated with haplarithm profiles for copy number profiling. Principles of interpretation are according to [64]. B) An overview of haplarithm profiles of 82 blastomeres and two fragments (grey squares) is depicted per category of whole-genome segregation profiles, as discussed in the main text. Each embryo is identified by a description at the top left of the embryo ID and cross (EmbryoID_Embryocross). At the top right, three chronological time-lapse images of the cleaving zygote are depicted. From left to right, the pictures show the initiation of the cleavage furrow, the ongoing first division and the embryo immediately after cleavage and before cell isolation (when video available). For each embryo, a schematic representation of likely steps leading to the genomic profile of each blastomere (B1-B4) or fragment (F1) is given. Chromosome-wise interpretation (1 - X) per blastomere is visualized in the bar above the haplarithm plots (see legend). Below each bar, the paternal haplarithm (pat-BAF), the maternal haplarithm (mat-BAF) and the normalized LogR values (LogR) are depicted. Paternal cross-over sites are depicted by the arrows (black, green or blue). A combination of parental cross-over sites in one blastomere or different cross-over sites in blastomeres of the same embryo uncover polyspermic fertilization or a meiotic error. Maternal cross-over sites (red, pink, orange) were only depicted in gynogenetic blastomeres and in case of whole-genome meiotic errors.
title: The Legacy of the Diagnostic Evaluation of Language Variation (DELV)
Creators: name: Pearson, Barbara Zurer
Publisher: name: University of Massachusetts Amherst
Year: 2018
Subjects: subject: language assessment
subject: African American English (AAE)
subject: language variation
subject: Applied Linguistics
subject: Linguistics
subject: FOS: Languages and literature

description: Hollebrandse, Bart, Jaieun Kim, Ana T. Pérez-Leroux, and Petra Schulz, eds. 2018; University of Massachusetts Occasional Papers in Linguistics (UMOP); Graduate Linguistic Student Association, publisher.
Additional file 1: of The genetic architecture of phosphorus efficiency in sorghum involves pleiotropic QTL for root morphology and grain yield under low phosphorus availability in the soil
Creators: name: Bernardino, Karine
name: Pastina, Maria
name: Cícero Menezes
name: Sousa, Sylvia
name: Laiane Maciel
name: Geraldo Jr
name: Guimarães, Claudia
name: Barros, Beatriz
name: Silva, Luciano Costa E
name: Carneiro, Pedro
name: Schaffert, Robert
name: Kochian, Leon
name: Jurandir Magalhaes
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Descriptive statistics and variance components for traits assessed in low-P conditions. (field and hydroponics). (DOCX 27 kb)
Onthophagus tabidus Balthasar 1935
Creators: name: Bezděk, Aleš
name: Hájek, Jiří
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Onthophagus
Onthophagus tabidus

description: Onthophagus tabidus Balthasar, 1935
 Onthophagus tabidus Balthasar, 1935b: 313.
One syntype is deposited in NMPC (ex coll. V. Balthasar):
SYNTYPE (J): ‘Nitou Tatsienlu / Szechuan China [p] // Onthophagus (s. str.) / tabidus n. sp. / Balthasar [hw] / Holotypus [p, ochreous label]’.
 Current status. Valid species; not assigned to any subgenus.
description: Published as part of Bezděk, Aleš & Hájek, Jiří, 2013, Catalogue of type specimens of beetles (Coleoptera) deposited in the National Museum, Prague, Czech Republic, pp. 387-442 in Acta Entomologica Musei Nationalis Pragae 53 (1) on page 423, DOI: 10.5281/zenodo.5739743
Additional file 3 of Pregnant women’s experiences of social distancing behavioural guidelines during the Covid-19 pandemic ‘lockdown’ in the UK, a qualitative interview study
Creators: name: Anderson, Emma
name: Brigden, Amberly
name: Davies, Anna
name: Shepherd, Emily
name: Ingram, Jenny
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 3. Thematic analysis according to the COM-B model (as Table 3) with supporting quotations. Table of themes from full analysis including supporting quotations
Effective-field theory analysis of the $τ^{-}\rightarrow (K π)^{-}ν_τ$ decays
Creators: name: Rendón, Javier
name: Roig, Pablo
name: Toledo, Genaro
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: We analyze the $τ^-\to(Kπ)^-ν_τ$ decays within an effective field theory description of heavy new physics (NP) modifying the SM left-handed weak charged current and include refined SM input for the participant meson form factors exploiting chiral symmetry, dispersion relations and (lattice) data. We include the leading dimension six operators and work at linear order in the effective couplings. Within this setting we: i) follow the derivation in Phys. Rev. Lett. 120 (2018) no.14, 141803 where it was proved unambiguously that it is impossible to understand the BaBar anomaly in the CP asymmetry measurement within this framework. We allow for reasonable variations of the hadronic input involved and study the associated uncertainty; ii) first show that the anomalous bump present in the published Belle data for the $K_Sπ^-$ invariant mass distribution close to threshold cannot be due to heavy NP; iii) first bind the heavy NP effective couplings using $τ^-\to(Kπ)^-ν_τ$ decays and show that they are competitive with those found in hyperon semileptonic decays (but clearly not with those obtained in Kaon (semi)leptonic decays for NP scalar currents). We put forward that the comparison of the considered tau decays with (semi)leptonic kaon and hyperon decays provide with meaningful tests of lepton universality for (NP) tensor interactions. We also compare the SM predictions with the possible deviations caused by NP in a couple of Dalitz plot distributions, in the forward-backward asymmetry and in the di-meson invariant mass distribution and discuss the most interesting measurements to be performed at Belle-II using these decays data.
description: 41 pages, 10 figures and 2 tables, as accepted for publication in PRD
Additional file 1 of The impact of childhood diagnosed ADHD versus controls without ADHD diagnoses on later labour market attachment—a systematic review of longitudinal studies
Creators: name: Christiansen, Marie Sturesson
name: Labriola, Merete
name: Kirkeskov, Lilli
name: Lund, Thomas
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1: Figure S1. Search results and reason for study exclusion.
Additional file 2 of Pregnant women’s experiences of social distancing behavioural guidelines during the Covid-19 pandemic ‘lockdown’ in the UK, a qualitative interview study
Creators: name: Anderson, Emma
name: Brigden, Amberly
name: Davies, Anna
name: Shepherd, Emily
name: Ingram, Jenny
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 2. Topic guide. Questions to guide semi-structured interviews
Onthophagus tatsienluensis Balthasar 1942
Creators: name: Bezděk, Aleš
name: Hájek, Jiří
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Onthophagus
Onthophagus tatsienluensis

description: Onthophagus tatsienluensis Balthasar, 1942
 Onthophagus tatsienluensis Balthasar, 1942b: 121.
Two syntypes are deposited in NMPC (ex coll. V. Balthasar):
SYNTYPE (unsexed specimen): ‘Nitou Tatsienlu / Szechuan China [p] // TYPUS [p, red label, black frame] // Onthophagus / tatsienluensis / n. sp. Typus. [hw] / Dr. V. Balthasar det. [p]’.
SYNTYPE (unsexed specimen): ‘Szechuan China [p] // Tatsienlu / Yüling Süd [p] // TYPUS [p, red label, black frame] // Onthophagus / tatsienluensis / n. sp. m. [hw] / Dr. V. Balthasar det. [p]’.
 Current status. Valid species; not assigned to any subgenus.
description: Published as part of Bezděk, Aleš & Hájek, Jiří, 2013, Catalogue of type specimens of beetles (Coleoptera) deposited in the National Museum, Prague, Czech Republic, pp. 387-442 in Acta Entomologica Musei Nationalis Pragae 53 (1) on page 424, DOI: 10.5281/zenodo.5739743
Additional file 1 of Pregnant women’s experiences of social distancing behavioural guidelines during the Covid-19 pandemic ‘lockdown’ in the UK, a qualitative interview study
Creators: name: Anderson, Emma
name: Brigden, Amberly
name: Davies, Anna
name: Shepherd, Emily
name: Ingram, Jenny
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1. Expression of interest form. Form for prospective participants to fill in prior to selection for interview
On the Distribution of X-ray Surface Brightness from Diffuse Gas
Creators: name: Voit, G. Mark
name: Bryan, Greg L.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Hot intergalactic gas in clusters, groups, and filaments emanates a continuous background of 0.5-2.0 keV X-rays that ought to be detectable with the new generation of X-ray observatories. Here we present selected results from a program to simulate the surface-brightness distribution of this background with an adaptive-mesh cosmological hydrodynamics code. We show that the bright end of this distribution is well approximated by combining the cluster temperature function with a beta-model for surface brightness and appropriate luminosity-temperature and core radius-luminosity relations. Our simulations verify that the X-ray background from hot gas vastly exceeds observational limits if non-gravitational processes do not modify the intergalactic entropy distribution. An entropy floor of ~100 keV cm^2, which could be established by either heating or cooling, appears necessary to reconcile the simulated background with observations. Because the X-ray background distribution is so sensitive to the effects of non-gravitational processes, it offers a way to constrain the thermal history of the intergalactic medium that is independent of the uncertainties associated with surveys of clusters and groups.
description: 7 pages, 3 figures, submitted to ApJ Letters Nov 17, 2000
A Robust Hierarchical Solver for Ill-conditioned Systems with Applications to Ice Sheet Modeling
Creators: name: Chen, Chao
name: Cambier, Leopold
name: Boman, Erik G.
name: Rajamanickam, Sivasankaran
name: Tuminaro, Raymond S.
name: Darve, Eric
Publisher: name: arXiv
Year: 2018
Subjects: subject: Numerical Analysis (math.NA)
subject: FOS: Mathematics
subject: 65F99

description: A hierarchical solver is proposed for solving sparse ill-conditioned linear systems in parallel. The solver is based on a modification of the LoRaSp method, but employs a deferred-compression technique, which provably reduces the approximation error and significantly improves efficiency. Moreover, the deferred-compression technique introduces minimal overhead and does not affect parallelism. As a result, the new solver achieves linear computational complexity under mild assumptions and excellent parallel scalability. To demonstrate the performance of the new solver, we focus on applying it to solve sparse linear systems arising from ice sheet modeling. The strong anisotropic phenomena associated with the thin structure of ice sheets creates serious challenges for existing solvers. To address the anisotropy, we additionally developed a customized partitioning scheme for the solver, which captures the strong-coupling direction accurately. In general, the partitioning can be computed algebraically with existing software packages, and thus the new solver is generalizable for solving other sparse linear systems. Our results show that ice sheet problems of about 300 million degrees of freedom have been solved in just a few minutes using a thousand processors.
description: corrected misspelled author names
The Geometrical Structure of 2d Bond-Orientational Order
Creators: name: Bowick, Mark
name: Travesset, Alex
Publisher: name: arXiv
Year: 2000
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We study the formulation of bond-orientational order in an arbitrary two dimensional geometry. We find that bond-orientational order is properly formulated within the framework of differential geometry with torsion. The torsion reflects the intrinsic frustration for two-dimensional crystals with arbitrary geometry. Within a Debye-Huckel approximation, torsion may be identified as the density of dislocations. Changes in the geometry of the system cause a reorganization of the torsion density that preserves bond-orientational order. As a byproduct, we are able to derive several identities involving the topology, defect density and geometric invariants such as Gaussian curvature. The formalism is used to derive the general free energy for a 2D sample of arbitrary geometry, both in the crystalline and hexatic phases. Applications to conical and spherical geometries are briefly addressed.
description: 22 pages, LaTeX, 4 eps figures Published version
Additional file 5 of Genomic characteristics of cattle copy number variations
Creators: name: Hou, Yali
name: Liu, George E
name: Bickhart, Derek M
name: Cardone, Maria Francesca
name: Wang, Kai
name: Kim, Eui-soo
name: Matukumalli, Lakshmi K
name: Ventura, Mario
name: Song, Jiuzhou
name: VanRaden, Paul M
name: Sonstegard, Tad S
name: Van Tassell, Curt P
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Authors’ original file for figure 2
Generators and relations for (generalised) Cartan type superalgebras
Creators: name: Carbone, Lisa
name: Cederwall, Martin
name: Palmkvist, Jakob
Publisher: name: arXiv
Year: 2018
Subjects: subject: Representation Theory (math.RT)
subject: High Energy Physics - Theory (hep-th)
subject: Quantum Algebra (math.QA)
subject: FOS: Mathematics
subject: FOS: Physical sciences

description: In Kac's classification of finite-dimensional Lie superalgebras, the contragredient ones can be constructed from Dynkin diagrams similar to those of the simple finite-dimensional Lie algebras, but with additional types of nodes. For example, $A(n-1,0) = \mathfrak{sl}(1|n)$ can be constructed by adding a "gray" node to the Dynkin diagram of $A_{n-1} = \mathfrak{sl}(n)$, corresponding to an odd null root. The Cartan superalgebras constitute a different class, where the simplest example is $W(n)$, the derivation algebra of the Grassmann algebra on $n$ generators. Here we present a novel construction of $W(n)$, from the same Dynkin diagram as $A(n-1,0)$, but with additional generators and relations.
description: 6 pages, talk presented at Group32, Prague, July 2018. v2: Minor changes
Efficient spin transport in a paramagnetic insulator
Creators: name: Oyanagi, Koichi
name: Takahashi, Saburo
name: Cornelissen, Ludo J.
name: Shan, Juan
name: Daimon, Shunsuke
name: Kikkawa, Takashi
name: Bauer, Gerrit E. W.
name: van Wees, Bart J.
name: Saitoh, Eiji
Publisher: name: arXiv
Year: 2018
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The discovery of new materials that efficiently transmit spin currents has been important for spintronics and material science. The electric insulator $\mathrm{Gd}_3\mathrm{Ga}_5\mathrm{O}_{12}$ (GGG) is a superior substrate for growing magnetic films, but has never been considered as a conduit for spin currents. Here we report spin current propagation in paramagnetic GGG over several microns. Surprisingly, the spin transport persists up to temperatures of 100 K $\gg$ $T_{\mathrm{g}} = 180$ mK, GGG's magnetic glass-like transition temperature. At 5 K we find a spin diffusion length ${λ_{\mathrm{GGG}}} = 1.8 \pm 0.2 μ$m and a spin conductivity $σ_{\mathrm{GGG}} = (7.3 \pm 0.3) \times10^4$ $\mathrm{Sm}^{-1}$ that is larger than that of the record quality magnet $\mathrm{Y}_3\mathrm{Fe}_5\mathrm{O}_{12}$ (YIG). We conclude that exchange coupling is not required for efficient spin transport, which challenges conventional models and provides new material-design strategies for spintronic devices.
description: 21 pages, 4 figures
Additional file 1 of Predictors of aetiology and outcomes of acute gastrointestinal illness in returning travellers: a retrospective cohort analysis
Creators: name: Lever, Robert A.
name: Tapper, Louis
name: Skarbek, Sophie
name: Chiodini, Peter L.
name: Armstrong, Margaret
name: Bailey, Robin L.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: 60506 Virology
subject: FOS: Biological sciences
subject: Computational Biology

description: Additional file 1.
Onthophagus (Onthophagus) telephus Balthasar 1969
Creators: name: Bezděk, Aleš
name: Hájek, Jiří
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Onthophagus
Onthophagus telephus

description: Onthophagus (Onthophagus) telephus Balthasar, 1969
 Onthophagus (s. str.) telephus Balthasar, 1969: 365, Fig. 3.
The holotype and two paratypes (including the allotype) are deposited in NMPC (ex coll. V.
Balthasar):
HOLOTYPE (J): ‘Neu-Guinea / Irian / Mamberamo-Tal [hw] // Onthophagus / telephus n.sp. / Balthasar / J [hw] Holotypus [p] 66 [hw, ochreous label]’.
PARATYPE (♀): ‘Neu-Guinea / Irian / Mamberamo-Tal [hw] // Onthophagus / telephus n.sp. / Balthasar / ♀ [hw] Allotypus [p] 66 [hw, ochreous label]’.
PARATYPE (J): ‘NEW GUINEA (NE) / Karimi, South of / Goroka, 1000 m. / 5.VI.1961 [p] // Ginger [p] // J. L. Gressitt / Collector / BISHOP [p] // Onthophagus / telephus n.sp. / Balthasar 66 / J min. [hw] / Paratypus [p, ochreous label]’.
 Current status. Valid species.
description: Published as part of Bezděk, Aleš & Hájek, Jiří, 2013, Catalogue of type specimens of beetles (Coleoptera) deposited in the National Museum, Prague, Czech Republic, pp. 387-442 in Acta Entomologica Musei Nationalis Pragae 53 (1) on pages 424-425, DOI: 10.5281/zenodo.5739743
Additional file 4 of Learning health systems in primary care: a systematic scoping review
Creators: name: Nash, Danielle M.
name: Bhimani, Zohra
name: Rayner, Jennifer
name: Zwarenstein, Merrick
Publisher: name: figshare
Year: 2021
Subjects: subject: Information Systems
subject: FOS: Computer and information sciences

description: Additional file 4. Integrated health systems and data networks with potential to become learning health systems. Summary of the identified integrated health systems and data networks with potential to become learning health systems and explanation for why they were not considered fully-functioning learning health systems
Thinging vs Objectfying in Software Engineering
Creators: name: Al-Fedaghi, Sabah
Publisher: name: arXiv
Year: 2018
Subjects: subject: Software Engineering (cs.SE)
subject: FOS: Computer and information sciences

description: In this paper, we propose the use of a modeling methodology based on the notion of thing, with a focus on the current stage of research being on the analysis phase of software system modeling. The object-oriented approach, which takes the object as a central concept, provides the opportunity to explore applying thinging to the reconceptualization of objects. Several object-oriented examples are recast in terms of thing-oriented modeling. The results indicate a positive development that leads to several possible options: (1) supplementing the object orientation (OO) paradigm with additional notations, and (2) promoting a further understanding of some aspect of the OO paradigm. The possibility of developing a new approach in modeling based on thinging also exists.
description: 8 pages, 18 figures
Additional file 3 of Learning health systems in primary care: a systematic scoping review
Creators: name: Nash, Danielle M.
name: Bhimani, Zohra
name: Rayner, Jennifer
name: Zwarenstein, Merrick
Publisher: name: figshare
Year: 2021
Subjects: subject: Information Systems
subject: FOS: Computer and information sciences

description: Additional file 3. Charted data elements and definitions or scenarios for meeting certain criteria. List of charted data elements abstracted from the included articles and definitions or scenarios for meeting certain criteria
Priming asymmetry persists in German-English-French trilinguals: the sense model modified for the trilingual mental lexicon
Creators: name: Wang, Xin
name: Steinman, Christina
name: Taft, Marcus
Publisher: name: Taylor & Francis
Year: 2023
Subjects: subject: Neuroscience
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: The present study examined within – and cross-language priming patterns among German-English-French trilinguals in order to explore the lexico-semantic representation of L3 in relation to L1 and L2. The trilinguals participated in three lexical decision tasks within the masked translation priming paradigm. The results showed significant within-language repetition priming effects in all three languages, significant translation priming effects for L2-L1, L1-L3, and L2-L3, but no significant priming for L1-L2, L3-L1 or L3-L2. Our findings demonstrate that translation priming asymmetry persists in trilinguals and that the weakest L3 is integrated into both L1 and L2 conceptually (i.e. three languages have a commonly shared conceptual representation). In addition, our results showed a language dominance shift over lexical development between L1 and L2. We argue for a modified Sense Model as the best fit to explain the cognitive architecture of the trilingual lexicon.
Additional file 2 of Learning health systems in primary care: a systematic scoping review
Creators: name: Nash, Danielle M.
name: Bhimani, Zohra
name: Rayner, Jennifer
name: Zwarenstein, Merrick
Publisher: name: figshare
Year: 2021
Subjects: subject: Information Systems
subject: FOS: Computer and information sciences

description: Additional file 2. Search strategies for Medline®, Embase® and IEEE Xplore®. Screenshots of the searches completed through different databases, including the keywords and mesh terms used
Additional file 1: of Mathematical modeling of movement on fitness landscapes
Creators: name: Nishant Gerald
name: Dibyendu Dutta
name: R. Brajesh
name: Supreet Saini
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Hematology
subject: Computational Biology

description: Figure S1. The likelihood of reaching global optima increases from zero to one around critical value of K when the benefit is higher than the cost. In this simulation the parameter (A) a is increased by a factor of 10; (B) parameter associated with cost per protein molecules (Îą) is increased by a factor of 10; (C) the parameter associated the sensitivity of the benefit function (b) is increased by a factor of 10; and (D) the parameter associated the sensitivity of the benefit function (b) is decreased by a factor of 10. Table S1. Parameter range of all 6 parameters (k, kr, kd, b, km, bas) used in the simulations. (DOCX 503 kb)
Additional file 1 of Regulatory VCAN polymorphism is associated with shoulder pain and disability in breast cancer survivors
Creators: name: Mafu, Trevor S.
name: September, Alison V.
name: Shamley, Delva
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Computational Biology

description: Additional file 1: Supplementary table 1. P-values for tests on Hardy–Weinberg equilibrium and Genotype effects on descriptive characteristics
PHIBSS2: survey design and z=0.5-0.8 results. Molecular gas reservoirs during the winding-down of star formation
Creators: name: Freundlich, J.
name: Combes, F.
name: Tacconi, L. J.
name: Genzel, R.
name: Garcia-Burillo, S.
name: Neri, R.
name: Contini, T.
name: Bolatto, A.
name: Lilly, S.
name: Salomé, P.
name: Bicalho, I. C.
name: Boissier, J.
name: Boone, F.
name: Bouché, N.
name: Bournaud, F.
name: Burkert, A.
name: Carollo, M.
name: Cooper, M. C.
name: Cox, P.
name: Feruglio, C.
name: Schreiber, N. M. Förster
name: Juneau, S.
name: Lippa, M.
name: Lutz, D.
name: Naab, T.
name: Renzini, A.
name: Saintonge, A.
name: Sternberg, A.
name: Walter, F.
name: Weiner, B.
name: Weiß, A.
name: Wuyts, S.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Following the success of the Plateau de Bure high-z Blue Sequence Survey (PHIBSS), we present the PHIBSS2 legacy program, a survey of the molecular gas properties of star-forming galaxies on and around the star formation main sequence (MS) at different redshifts using NOEMA. This survey significantly extends the existing sample of star-forming galaxies with CO molecular gas measurements, probing the peak epoch of star formation (z=1-1.6) as well as its building-up (z=2-3) and winding-down (z=0.5-0.8) phases. The targets are drawn from the GOODS, COSMOS, and AEGIS deep fields and uniformly sample the MS in the stellar mass (M*) - star formation rate (SFR) plane with log(M*/Msun) = 10-11.8. We describe the survey strategy and sample selection before focusing on the results obtained at z=0.5-0.8, where we report 60 CO(2-1) detections out of 61 targets. We determine their molecular gas masses and separately obtain disc sizes and bulge-to-total (B/T) luminosity ratios from HST I-band images. The median molecular gas-to-stellar mass ratio, gas fraction, and depletion time as well as their dependence with M* and offset from the MS follow published scaling relations for a much larger sample of galaxies spanning a wider range of redshifts. The galaxy-averaged Kennicutt-Schmidt (KS) relation between molecular gas and SFR surface densities is strikingly linear, pointing towards similar star formation timescales within galaxies at any given epoch. In terms of morphology, the molecular gas content, the SFR, the disc stellar mass, and the disc molecular gas fraction do not seem to correlate with B/T and the stellar surface density, which suggests an ongoing supply of fresh molecular gas to compensate for the build-up of the bulge. Our measurements do not yield any significant variation of the depletion time with B/T and hence no strong evidence for morphological quenching within the scatter of the MS.
description: Accepted for publication in A&A (28 pages, 9 figures, 4 tables)
Additional file 1 of Learning health systems in primary care: a systematic scoping review
Creators: name: Nash, Danielle M.
name: Bhimani, Zohra
name: Rayner, Jennifer
name: Zwarenstein, Merrick
Publisher: name: figshare
Year: 2021
Subjects: subject: Information Systems
subject: FOS: Computer and information sciences

description: Additional file 1. Preferred Reporting Items for Systematic reviews and Meta-Analyses extension for Scoping Reviews (PRISMA-ScR) Checklist. Reporting checklist for systematic reviews
Onthophagus (Onthophagus) tenax Balthasar 1964
Creators: name: Bezděk, Aleš
name: Hájek, Jiří
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Onthophagus
Onthophagus tenax

description: Onthophagus (Onthophagus) tenax Balthasar, 1964
 Onthophagus (s. str.) tenax Balthasar, 1964b: 292.
The holotype is deposited in NMPC (ex coll. V. Balthasar):
HOLOTYPE (♀): ‘Africa or. / Katona [p] // Arusha-Ju / 1905. [p] // Onthophagus (s.str.) / tenax n.sp. / ♀ Balth. 63 [hw] / Holotypus [p, orange label]’.
 Current status. Valid species.
description: Published as part of Bezděk, Aleš & Hájek, Jiří, 2013, Catalogue of type specimens of beetles (Coleoptera) deposited in the National Museum, Prague, Czech Republic, pp. 387-442 in Acta Entomologica Musei Nationalis Pragae 53 (1) on page 425, DOI: 10.5281/zenodo.5739743
Additional file 1 of Facility-level determinants of quality routine intrapartum care in Afghanistan
Creators: name: Lydon, Megan M.
name: Maruf, Farzana
name: Tappis, Hannah
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer

description: Additional file 1: Supplementary Table 1. Proportion of providers reporting receiving various training and supervision experiences.
Additional file 8: of Association of extracerebral organ failure with 1-year survival and healthcare-associated costs after cardiac arrest: an observational database study
Creators: name: Pirkka Pekkarinen
name: BĂ¤Cklund, Minna
name: Efendijev, Ilmar
name: Raj, Rahul
name: Folger, Daniel
name: Litonius, Erik
name: Laitio, Ruut
name: Stepani Bendel
name: Hoppu, Sanna
name: Ala-Kokko, Tero
name: Reinikainen, Matti
name: Skrifvars, Markus
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Figure S4. Total costs per patient stratified by admission year. (PDF 46 kb)
Holographic rainbow networks for colorful Motzkin and Fredkin spin chains
Creators: name: Alexander, Rafael N.
name: Ahmadain, Amr
name: Zhang, Zhao
name: Klich, Israel
Publisher: name: arXiv
Year: 2018
Subjects: subject: Quantum Physics (quant-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We present bulk tensor networks that exactly represent the ground states of a continuous family of one-dimensional frustration-free Hamiltonians. These states, which are known as area-deformed Motzkin and Fredkin states, exhibit a novel quantum phase transition. By tuning a single parameter, they go from a phase obeying an area law to a highly entangled rainbow phase, where the half-chain entropy scales with the volume. Using the representation of these ground states as superpositions of random walks, we introduce tensor networks for these ground states where local and global rules of the walker are baked into bulk tensors, thereby providing an efficient description of the ground states (some of which satisfy a volume law scaling of entanglement entropy).
description: 7 pages, 6 figures
Direct Measurement of the Destruction of Charge Quantization in a Single Electron Box
Creators: name: Duncan, David S.
name: Livermore, Carol
name: Westervelt, Robert M.
name: Maranowski, Kevin D.
name: Gossard, Arthur C.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We report here direct measurements of the destruction of charge quantization in a single electron box, the first over the full range of box-to-lead conductance values from G ~ 0 to the conductance quantum G_q = 2e^2/h, using a sensitive single-electron transistor (SET) electrometer. The sensitivity of the electrometer is measured to be dq ~ 6 x 10^-5 e/sqrt{Hz} and its superiority to conductance measurements of charge fluctuations is clearly demonstrated. As the rate of quantum mechanical tunneling from the box to its lead is increased, the quantization of charge is destroyed, disappearing entirely at G = G_q in agreement with theory.
description: 9 pages, 4 figures, to be published in Applied Physics Letters
The X-ray surface brightness distribution from diffuse gas
Creators: name: Bryan, Greg L.
name: Voit, G. Mark
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We use simulations to predict the X-ray surface brightness distribution arising from hot, cosmologically distributed diffuse gas. The distribution is computed for two bands: 0.5-2 keV and 0.1-0.4 keV, using a cosmological-constant dominated cosmology that fits many other observations. We examine a number of numerical issues such as resolution, simulation volume and pixel size and show that the predicted mean background is sensitive to resolution such that higher resolution systematically increases the mean predicted background. Although this means that we can compute only lower bounds to the predicted level, these bounds are already quite restrictive. Since the observed extra-galactic X-ray background is mostly accounted for by compact sources, the amount of the observed background attributable to diffuse gas is tightly constrained. We show that without physical processes in addition to those included in the simulations (such as radiative cooling or non-gravitational heating), both bands exceed observational limits. In order to examine the effect of non-gravitational heating we explore a simple modeling of energy injection and show that substantial amounts of heating are required (i.e. 5 keV per particle when averaged over all baryons). Finally, we also compute the distribution of surface brightness on the sky and show that it has a well-resolved characteristic shape. This shape is substantially modified by non-gravitational heating and can be used as a probe of such energy injection.
description: 11 pages, 11 figures, submitted to ApJ
Depletion potential in hard-sphere mixtures: theory and applications
Creators: name: Roth, R.
name: Evans, R.
name: Dietrich, S.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We present a versatile density functional approach (DFT) for calculating the depletion potential in general fluid mixtures. In contrast to brute force DFT, our approach requires only the equilibrium density profile of the small particles {\em before} the big (test) particle is inserted. For a big particle near a planar wall or a cylinder or another fixed big particle the relevant density profiles are functions of a single variable, which avoids the numerical complications inherent in brute force DFT. We implement our approach for additive hard-sphere mixtures. By investigating the depletion potential for high size asymmetries we assess the regime of validity of the well-known Derjaguin approximation for hard-sphere mixtures and argue that this fails. We provide an accurate parametrization of the depletion potential in hard-sphere fluids which should be useful for effective Hamiltonian studies of phase behavior and colloid structure.
Additional file 1 of Exploring the use of health and wellbeing measures during pregnancy and the first year following birth in women living with pre-existing long-term conditions: qualitative interviews with women and healthcare professionals
Creators: name: Kelly, Laura
name: Kurinczuk, Jennifer J.
name: Rivero-Arias, Oliver
name: Fitzpatrick, Ray
name: Gibbons, Elizabeth
name: Alderdice, Fiona
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1.