cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
An Asymptotically Compatible Formulation for Local-to-Nonlocal Coupling Problems without Overlapping Regions
Creators: name: You, Huaiqian
name: Yu, Yue
name: Kamensky, David
Publisher: name: arXiv
Year: 2019
Subjects: subject: Numerical Analysis (math.NA)
subject: FOS: Mathematics
subject: 45K05, 65R20, 65G99, 65M12, 76R50,

description: In this paper we design and analyze an explicit partitioned procedure for a 2D dynamic local-to-nonlocal (LtN) coupling problem, based on a new nonlocal Robin-type transmission condition. The nonlocal subproblem is modeled by the nonlocal heat equation with a finite horizon parameter $δ$ characterizing the range of nonlocal interactions, and the local subproblem is described by the classical heat equation. We consider a heterogeneous system where the local and nonlocal subproblems present different physical properties, and employ no overlapping region between the two subdomains. We first propose a new generalization of classical local Neumann-type condition by converting the local flux to a correction term in the nonlocal model, and show that the proposed Neumann-type boundary formulation recovers the local case as $O(δ^2)$ in the $L^{\infty}$ norm. We then extend the nonlocal Neumann-type boundary condition to a Robin-type boundary condition, and develop a local-to-nonlocal coupling formulation with Robin-Dirichlet transmission conditions. To stabilize the explicit coupling procedure and to achieve asymptotic compatibility, the choice of the coefficient in the Robin condition is obtained via amplification factor analysis for the discretized system with coarse grids. Employing a high-order meshfree discretization method in the nonlocal solver and a linear finite element method in the local solver, the selection of optimal Robin coefficients are verified with numerical experiments on heterogeneous and complicated domains. With the developed optimal coupling strategy, we numerically demonstrate the coupling framework's asymptotic convergence to the local limit with an $O(δ)=O(h)$ rate, when there is a fixed ratio between the horizon size $δ$ and the spatial discretization size $h$.
Tomocerus vulgaris
Creators: name: Thibaud, Jean-Marc
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Tomoceridae
Tomocerus
Tomocerus vulgaris

description: Tomocerus vulgaris (Tullberg, 1871) *
Macrotoma vulgaris Tullberg, 1871: 149.
Tomocerus vulgaris – Tullberg 1876: 31.
DISTRIBUTION. — Ardèche. Porche de la grotte de Pascaloune (Stomp etal. 1982).
Ardennes, Côtes dijonaise et chalonaise, Auxoiset Morvan. Denis 1921.
Ariège. Grottede Moulis (Cauchois & Théodoridés 1954). — Grotte supérieure dela route de Montagagne (Thibaud 1970).
Bas-Rhin. Merkwiller-Pechelbronn (Gillet & Ponge 2005).
Côte-d’Or. Velars (François 1971).
Hauts-de-Seine. Maresde Clamart (Pichard etal. 1989).
Loir-et-Cher. Forêt près de Salbris (Prat & Massoud 1980).
Marne. Montagne de Reims (Chauvin 1981b).
Nièvre. Parc du Château de Cuzy à Flez-Cuzy (Thibaud 1977).
Oise. Précy-sur-Oise (Lécaillon 1901).
Var. Massif des Maures (Poinsot-Balaguer & Kabakibi 1987).
Vendée. Île-d’Yeu (Denis 1922a).
CHÉTOTAXIE, MORPHO- ANATOMIE. — François 1971 (endosquelette, tête).
PHYSIOLOGIE. — Thibaud 1977 (mue, température, mortalité).
ÉCOLOGIE. — Prat & Massoud 1980 (sol forestier). — Poinsot- Balaguer & Kabakibi 1987; Pichard etal. 1989; Gillet & Ponge 2005 (pollution).
description: Published as part of Thibaud, Jean-Marc, 2017, Catalogue des collemboles de France, pp. 297-436 in Zoosystema 39 (3) on page 376, DOI: 10.5252/z2017n3a1, http://zenodo.org/record/5496272
Identifying a black hole X-ray transient in M31 with XMM-Newton and Chandra
Creators: name: Barnard, R.
name: Kolb, U.
name: Osborne, J. P.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Stochastic variability in two out of four XMM-Newton observations of XMMU J004303+4115 along with its power spectra and X-ray luminosities suggest a low-mass X-ray binary (LMXB) with a black hole primary. However, Chandra observations resolve the object into two point sources. We use data from 35 Chandra observations to analyse the contributions of each source, and attribute the variability to CXOM31 J004303.2+411528 (known as r2-3), which varies in intensity by a factor of ~100 between observations. We assume that the power density spectra of LMXBs are governed by the luminosity, and that the transition between types of power density spectra occurs at some critical luminosity in Eddington units, l_c, that applies to all LMXBs. We use results from these XMM-Newton observations and past results from the available literature to estimate this transition luminosity, and find that all results are consistent with l_c ~0.1 in the 0.3--10 keV band. CXOM31 J004303.2+411528 exhibits a low accretion rate power density spectrum at a 0.3--10 keV luminosity of (5.3+/-0.6)x10^{37} erg/s. Known stellar mass black holes have masses of 4--15 M_{\odot}; hence our observations of CXOM31 J004303.2+411528 are consistent with l_c ~0.1 if it has a black hole primary.
description: Accepted for publication in A&A; 9 pages, 4 figures
VLT surface photometry and isophotal analysis of early-type dwarf galaxies in the Virgo cluster
Creators: name: Barazza, Fabio D.
name: Binggeli, Bruno
name: Jerjen, Helmut
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We have carried out surface photometry and an isophotal analysis for a sample of 25 early-type dwarf (dE and dS0) galaxies in the Virgo cluster based on CCD images taken at the VLT with FORS1 and FORS2. For each galaxy we present $B$ and $R$-band surface brightness profiles, as well as the radial colour ($B-R$) profile. We give total apparent $BR$ magnitudes, effective radii, effective surface brightnesses and total colour indices. The light profiles have been fitted with Sérsic models and the corresponding parameters are compared to the ones for other classes of objects. The observed profiles of the brightest cluster dwarfs show significant deviations from a simple Sérsic model, indicating that there is more inner structure than just a nucleus. In addition, we find a relation between the effective surface brightness, at a given luminosity, and the strength of the offset of the galaxy's nucleus with respect to the center of the isophotes. Dwarfs with large nuclear offsets also tend to have stronger isophotal twists. In sum, our findings suggest the presence of substructure in most, and preferentially in the less compact, bright early-type dwarfs. The physical (dynamical) meaning of this has yet to be explored. (abridged)
description: 29 pages, accepted for publication in A&A
Cheumatopsyche trifida
Creators: name: Oláh, János
name: Johanson, Kjell Arne
name: Barnard, Peter C.
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Trichoptera
Hydropsychidae
Cheumatopsyche
Cheumatopsyche trifida

description: Cheumatopsyche trifida (Mosely, 1935)
 Hydropsychodes trifida Mosely, 1935: 228.
 Cheumatopsyche trifida (Mosely, 1935); Mosely 1939: 27.
 Type locality: Zaire.
description: Published as part of Oláh, János, Johanson, Kjell Arne & Barnard, Peter C., 2008, Revision of the Oriental and Afrotropical species of Cheumatopsyche Wallengren (Hydropsychidae, Trichoptera), pp. 1-171 in Zootaxa 1738 on page 41
Additional file 3 of Deconstructing the genetic architecture of iron deficiency chlorosis in soybean using genome-wide approaches
Creators: name: Teshale Assefa
name: Jiaoping Zhang
name: R. Chowda-Reddy
name: Lauter, Adrienne Moran
name: Singh, Arti
name: Oâ€™Rourke, Jamie
name: Graham, Michelle
name: Asheesh Singh
Publisher: name: figshare
Year: 2020
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology

description: Additional file 3: Figure S3. Venn diagrams illustrating the distribution of significant SNPs associated with IDC detected at different time points.
Full Optimization of Linear Parameters of a United Residue Protein Potential
Creators: name: Lee, Julian
name: Park, Kibeom
name: Lee, Jooyoung
Publisher: name: arXiv
Year: 2003
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Biological Physics (physics.bio-ph)
subject: Biomolecules (q-bio.BM)
subject: FOS: Physical sciences
subject: FOS: Biological sciences

description: We apply the general protocol of parameter optimization (Lee, J. et al. Phys. Chem. B 2001, 105, 7291) to the UNRES potential. In contrast to the earlier works where only the relative weights of various interaction terms were optimized, we optimize all linear parameters of the potential. The method exploits the high efficiency of the conformal space annealing method in finding distinct low energy conformations. For a given training set of proteins, the parameters are modified to make the native-like conformations energetically more favorable than the non-native ones. Linear approximation is used to estimate the energy change due to the parameter modification. The parameter change is followed by local energy reminimization and new conformational searches to find the energies of native-like and non-native local minima of the energy function with new parameters. These steps are repeated until the potential predicts a native-like conformation as one of the low energy conformations for each protein in the training set. We consider a training set of crambin (PDB ID 1ejg), 1fsd, and the 10-55 residue fragment of staphylococcal protein A (PDB ID 1bdd). As the first check for the feasibility of our protocol, we optimize the parameters separately for these proteins and find an optimal set of parameters for each of them. Next we apply the method simultaneously to these three proteins. By refining all linear parameters, we obtain an optimal set of parameters from which the native-like conformations of the all three proteins are retrieved as the global minima, without introducing additional multi-body energy terms.
description: revtex, 22 pages, 9 figures
Tritomurus falcifer Cassagnau 1958
Creators: name: Thibaud, Jean-Marc
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Tomoceridae
Tritomurus
Tritomurus falcifer

description: Tritomurus falcifer Cassagnau, 1958 *
Tritomurus falcifer Cassagnau, 1958a: 121.
DISTRIBUTION. — Haute-Garonne. Grottede Juzet (Cassagnau 1958a). — Goueildi Her (Cassagnau 1964b). — Grottes (Vannier & Thibaud 1978). — Grottedu Beguet (Thibaud 1981).
PHYSIOLOGIE. — Vannier & Thibaud 1978 (eau); Thibaud 1981 (jeûne).
description: Published as part of Thibaud, Jean-Marc, 2017, Catalogue des collemboles de France, pp. 297-436 in Zoosystema 39 (3) on page 376, DOI: 10.5252/z2017n3a1, http://zenodo.org/record/5496272
Regularity of multifractional moving average processes with random Hurst exponent
Creators: name: Loboda, Dennis
name: Mies, Fabian
name: Steland, Ansgar
Publisher: name: arXiv
Year: 2020
Subjects: subject: Probability (math.PR)
subject: FOS: Mathematics
subject: 60G17, 60G18, 60G22

description: A recently proposed alternative to multifractional Brownian motion (mBm) with random Hurst exponent is studied, which we refer to as Itô-mBm. It is shown that Itô-mBm is locally self-similar. In contrast to mBm, its pathwise regularity is almost unaffected by the roughness of the functional Hurst parameter. The pathwise properties are established via a new polynomial moment condition similar to the Kolmogorov-Chentsov theorem, allowing for random local Hölder exponents. Our results are applicable to a broad class of moving average processes where pathwise regularity and long memory properties may be decoupled, e.g. to a multifractional generalization of the Matérn process.
description: accepted manuscript
title: 03_0828
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
Supplementary document for Unsupervised Robust and Noise-Free Representation Learning for Effective Image Enhancement in Nonlinear Optical Microscopy - 6492018.pdf
Creators: name: Jhang, Yun-Jie
name: Lin, Xin
name: Chia, Shih-Hsuan
name: CHEN, WEI CHUNG
name: WU, I-CHEN
name: WU, MING TSANG
name: Zhuo, Guan-Yu
name: Tai, Tsung-Ming
name: Chen, Hung-Wen
Publisher: name: Optica Publishing Group
Year: 2023
Subjects: Uncategorized

description: Expanded descriptions of materials and methods.
An additional symmetry in the Weinberg - Salam model
Creators: name: Bakker, B. L. G.
name: Veselov, A. I.
name: Zubkov, M. A.
Publisher: name: arXiv
Year: 2004
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: An additional $Z_6$ symmetry hidden in the fermion and Higgs sectors of the Standard Model has been found recently. It has a singular nature and is connected to the centers of the SU(3) and SU(2) subgroups of the gauge group. A lattice regularization of the Standard Model was constructed that possesses this symmetry. In this paper we report our results on the numerical simulation of its Electroweak sector.
description: to appear in Yad. Fiz
Cheumatopsyche anema Marlier 1959
Creators: name: Oláh, János
name: Johanson, Kjell Arne
name: Barnard, Peter C.
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Trichoptera
Hydropsychidae
Cheumatopsyche
Cheumatopsyche anema

description: Cheumatopsyche anema Marlier, 1959
 Cheumatopsyche anema Marlier, 1959: 111.
 Type locality: São Tomé Islands.
description: Published as part of Oláh, János, Johanson, Kjell Arne & Barnard, Peter C., 2008, Revision of the Oriental and Afrotropical species of Cheumatopsyche Wallengren (Hydropsychidae, Trichoptera), pp. 1-171 in Zootaxa 1738 on page 48
Cyphoderus albinus
Creators: name: Thibaud, Jean-Marc
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Paronellidae
Cyphoderus
Cyphoderus albinus

description: Cyphoderus albinus (Nicolet, 1842) *
Cyphodeirus albinos Nicolet, 1842: 67.
Cyphoderus albinus – Lucas 1844: 293.
Lepidocyrtus albinos – Lubbock 1867: 301.
Cyphoderus albus Carl, 1899: 3.
DISTRIBUTION. — France. Gervais 1844 (Lepidocyrtus albinos).
Nord. Lille, dansfourmilières (Moniez 1890a).
Aisne. Coucy-le-Château (Moniez 1890a).
Ardèche. Près du quartier de Bournet à Grospierres (Stomp et al. 1982).
Ardennes, Côtes dijonaiseet chalonaise, Auxoiset Morvan. Denis 1921.
Bouches-du-Rhône. Forêtde Cadarache (Rougon & Rougon 1970). — Camargue (Poinsot 1973).
Corse. Calvi (Cassagnau 1954b).
Côtes-du-Nord. Saint-Brieux (Delamare Deboutteville 1948c).
Environsde Paris. Bourg-la-Reine, Robinson, Boulogne (Delamare Deboutteville 1948c).
Essonne. Forêtde Sénart (Ponge 1993).
Eure. Houetteville (Delamare Deboutteville 1948c).
Finistère. Morlaix, Roscoff, Lannilis, Brest, dansfourmilières (Delamare Deboutteville 1948c).
Haute-Marne. Chaumont-en-Bassigny (Moniez 1890a).
Indre-et-Loire. Chinon (Moniez 1890a).
Indre. Parc régional de la Brenne (Ponge et al. 2008).
Landes et Gironde. Canaux des Landes, Lacanau, Carcans, Reveilhon (Delamare Deboutteville 1948c).
Lot. Rocamadour, Padirac (Delamare Deboutteville 1948c).
Nièvre. Parcrégionaldu Morvan (Ponge etal. 2003).
Pas-de-Calais. Le Portel (Moniez 1890a).
Puy-de-Dôme. Mont-Dore, Sancy, Chambon, la Bourboule (Delamare Deboutteville 1948c).
Pyrénées-Orientales. Banyuls-sur-Mer (Delamare Deboutteville 1948c). — Forêtde hêtres, la Massane, 630 m, prèsde Banyulssur-Mer (Izarra 1980).
Seine-Maritime. Rouen, Le Havre (Delamare Deboutteville 1948c).
Somme. Amiens (Moniez 1890a).
Sud-Ouestdela France. Dansfourmilières (Cassagnau 1961).
Var. Collobrières (Carl 1899, C. albus). — Massif des Maures (Poinsot-Balaguer & Kabakibi 1987).
Vendée. Île-d’Yeu (Denis 1922a).
Yonne. Mailly-la-Ville et Avallon (Moniez 1890a).
ÉCOLOGIE. — Rougon & Rougon 1970; Poinsot 1973; Poinsot- Balaguer & Kabakibi 1987; Ponge 1993; Ponge etal. 2003 (bioindicateur), 2008 (test perturbation environnement).
description: Published as part of Thibaud, Jean-Marc, 2017, Catalogue des collemboles de France, pp. 297-436 in Zoosystema 39 (3) on page 376, DOI: 10.5252/z2017n3a1, http://zenodo.org/record/5496272
Magnetic Fluctuations and the Spin-Orbit Interaction in Mott Insulating CoO
Creators: name: Sarte, P. M.
name: Wilson, S. D.
name: Attfield, J. P.
name: Stock, C.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Motivated by the presence of an unquenched orbital angular momentum in CoO, a team at Chalk River, including a recently hired research officer Roger Cowley, performed the first inelastic neutron scattering experiments on the classic Mott insulator [Sakurai $\textit{et al.}$ 1968 Phys. Rev. $\mathbf{167}$ 510]. Despite identifying magnon modes at the zone boundary, the team was unable to parameterise the low energy magnetic excitation spectrum below $T\rm{_{N}}$ using conventional pseudo-bosonic approaches. It would not be for another 40 years that Roger, now at Oxford and motivated by the discovery of the high-$T_{c}$ cuprate superconductors [Bednorz & Muller 1986 Z. Phys. B $\mathbf{64}$ 189], would make another attempt at the parameterisation of the magnetic excitation spectrum that had previously alluded him. Upon his return to CoO, Roger found a system embroiled in controversy, with some of its most fundamental parameters still remaining undetermined. Faced with such a formidable task, Roger performed a series of inelastic neutron scattering experiments in the early 2010's on both CoO and a magnetically dilute structural analogue MgO. These experiments would prove instrumental in the determination of both single-ion [Cowley $\textit{et al.}$ 2013 Phys. Rev. B $\mathbf{88}$ 205117] and cooperative magnetic parameters [Sarte $\textit{et al.}$ 2018 Phys. Rev. B $\mathbf{98}$ 024415] for CoO. Both these sets of parameters would eventually be used in a spin-orbit exciton model [Sarte $\textit{et al.}$ 2019 Phys. Rev. B $\mathbf{100}$ 075143], developed by his longtime friend and collaborator Bill Buyers, to successfully parameterise the complex spectrum that both measured at Chalk River almost 50 years prior. The story of CoO is of one that has come full circle, one filled with both spectacular failures and intermittent, yet profound, little victories.
description: (34 pages, 8 figures, 3 tables, submitted as part of a special issue of JPCM on X-ray and Neutron Scattering and dedicated to the memory of Prof. R. A. Cowley)
Quasinormal-mode modeling and design in nonlinear nano-optics
Creators: name: Gigli, Carlo
name: Wu, Tong
name: Marino, Giuseppe
name: Borne, Adrien
name: Leo, Giuseppe
name: Lalanne, Philippe
Publisher: name: arXiv
Year: 2019
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: Based on quasinormal-mode theory, we propose a novel approach enabling a deep analytical insight into the multi-parameter design and optimization of nonlinear photonic structures at subwavelength scale. A key distinction of our method from previous formulations relying on multipolar Mie-scattering expansions is that it directly exploits the natural resonant modes of the nanostructures, which provide the field enhancement to achieve significant nonlinear efficiency. Thanks to closed-form expression for the nonlinear overlap integral between the interacting modes, we illustrate the potential of our method with a two-order-of-magnitude boost of second harmonic generation in a semiconductor nanostructure, by engineering both the sign of $χ^{(2)}$ at subwavelength scale and the structure of the pump beam.
Pauli equation and the method of supersymmetric factorization
Creators: name: Ioffe, M. V.
name: Neelov, A. I.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We consider different variants of factorization of a 2x2 matrix Schroedinger/Pauli operator in two spatial dimensions. They allow to relate its spectrum to the sum of spectra of two scalar Schroedinger operators, in a manner similar to one-dimensional Darboux transformations. We consider both the case when such factorization is reduced to the ordinary 2-dimensional SUSY QM quasifactorization and a more general case which involves covariant derivatives. The admissible classes of electromagnetic fields are described and some illustrative examples are given.
description: 18 pages, Latex
Additional file 2 of Deconstructing the genetic architecture of iron deficiency chlorosis in soybean using genome-wide approaches
Creators: name: Teshale Assefa
name: Jiaoping Zhang
name: R. Chowda-Reddy
name: Lauter, Adrienne Moran
name: Singh, Arti
name: Oâ€™Rourke, Jamie
name: Graham, Michelle
name: Asheesh Singh
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 2: Figure S2. Manhattan plots of IDC GWAS for each time point.
Evolving Diverse Sets of Tours for the Travelling Salesperson Problem
Creators: name: Do, Anh Viet
name: Bossek, Jakob
name: Neumann, Aneta
name: Neumann, Frank
Publisher: name: arXiv
Year: 2020
Subjects: subject: Neural and Evolutionary Computing (cs.NE)
subject: FOS: Computer and information sciences

description: Evolving diverse sets of high quality solutions has gained increasing interest in the evolutionary computation literature in recent years. With this paper, we contribute to this area of research by examining evolutionary diversity optimisation approaches for the classical Traveling Salesperson Problem (TSP). We study the impact of using different diversity measures for a given set of tours and the ability of evolutionary algorithms to obtain a diverse set of high quality solutions when adopting these measures. Our studies show that a large variety of diverse high quality tours can be achieved by using our approaches. Furthermore, we compare our approaches in terms of theoretical properties and the final set of tours obtained by the evolutionary diversity optimisation algorithm.
description: 11 pages, 3 tables, 3 figures, published in GECCO '20; proof of Theorem 1 corrected
Additional file 1 of Deconstructing the genetic architecture of iron deficiency chlorosis in soybean using genome-wide approaches
Creators: name: Teshale Assefa
name: Jiaoping Zhang
name: R. Chowda-Reddy
name: Lauter, Adrienne Moran
name: Singh, Arti
name: Oâ€™Rourke, Jamie
name: Graham, Michelle
name: Asheesh Singh
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology

description: Additional file 1: Figure S1. (a and b). Field chlorosis ratings and correlations across treatments and time.
Cheumatopsyche explicanda Statzner 1975
Creators: name: Oláh, János
name: Johanson, Kjell Arne
name: Barnard, Peter C.
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Trichoptera
Hydropsychidae
Cheumatopsyche
Cheumatopsyche explicanda

description: Cheumatopsyche explicanda Statzner, 1975
 Cheumatopsyche explicanda Statzner, 1975: 394.
 Type locality: Central Africa.
description: Published as part of Oláh, János, Johanson, Kjell Arne & Barnard, Peter C., 2008, Revision of the Oriental and Afrotropical species of Cheumatopsyche Wallengren (Hydropsychidae, Trichoptera), pp. 1-171 in Zootaxa 1738 on page 48
Flare stars in the TW Hydrae association: The HIP 57269 system
Creators: name: König, B.
name: Neuhäuser, R.
name: Guenther, E. W.
name: Hambaryan, V.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We discuss a new member candidate of the TW Hydrae association (TWA) among the stars of the Gershberg et al. (1999) flare star catalog. TWA is one of the closest known associations of young stars at about 60 pc. Three supposedly young flare stars are located in the same region of the sky as TWA. One of them (HIP 57269) shows strong Lithium absorption with spectral type K1/K2V and a high level of chromospheric and coronal activity. It is located at a distance of 48.7\pm6.3 pc in common with the five TWA members observed with Hipparcos (46.7 to 103.9 pc). HIP 57268 A has a wide companion C which also shows Lithium absorption at 6707Åand which has common proper motion with HIP 57269, as well as a close companion resolved visually by Tycho. HIP 57269A&C lie above the main sequence and are clearly pre-main-sequence stars. The UVW-space velocity is more consistent with the star system being a Pleiades super cluster member. The two other flare stars in the TWA sky region do not show Lithium at all and are, hence, unrelated.
description: 7 pages, 8 figures
Additional file 2 of QuantTB – a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data
Creators: name: Anyansi, Christine
name: Keo, Arlin
name: Walker, Bruce
name: Straub, Timothy
name: Manson, Abigail
name: Earl, Ashlee
name: Abeel, Thomas
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 2: Figure S2. Histogram of residual error of QuantTB’s relative abundance prediction across different testing scenarios. The x axis is the difference between relative abundance prediction of QuantTB and the actual relative abundance value. The y axis is the total number of strains with that error. A distance of 0 means that QuantTB predicted the relative abundance perfectly for that strain. Higher distance/error indicates that QuantTB predicted the relative abundance further away from the actual value. Color indicates whether QuantTB predicted the correct strain (TP) or the wrong strain (FP). Tests were conducted using two different databases (d50 and d100) with mixed samples where the two strains are present at different coverages (1x-9x or 3x-7x).
Cyphoderus bidenticulatus Parona 1888
Creators: name: Thibaud, Jean-Marc
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Paronellidae
Cyphoderus
Cyphoderus bidenticulatus

description: Cyphoderus bidenticulatus Parona, 1888 *
Cyphoderus albinos var. bidenticulatus Parona, 1888: 140.
Cyphoderus bidenticulatus – Börner 1903: 157.
DISTRIBUTION. — Hérault. Étang de Vendres (Denis 1923b, var. veneris, 1924d; Delamare Deboutteville 1948c).
TAXONOMIE. — Denis 1924d (redescription).
description: Published as part of Thibaud, Jean-Marc, 2017, Catalogue des collemboles de France, pp. 297-436 in Zoosystema 39 (3) on page 377, DOI: 10.5252/z2017n3a1, http://zenodo.org/record/5496272
Solving the scalarization issues of Advantage-based Reinforcement Learning Algorithms
Creators: name: Galatolo, Federico A.
name: Cimino, Mario G. C. A.
name: Vaglini, Gigliola
Publisher: name: arXiv
Year: 2020
Subjects: subject: Machine Learning (cs.LG)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: In this research, some of the issues that arise from the scalarization of the multi-objective optimization problem in the Advantage Actor Critic (A2C) reinforcement learning algorithm are investigated. The paper shows how a naive scalarization can lead to gradients overlapping. Furthermore, the possibility that the entropy regularization term can be a source of uncontrolled noise is discussed. With respect to the above issues, a technique to avoid gradient overlapping is proposed, while keeping the same loss formulation. Moreover, a method to avoid the uncontrolled noise, by sampling the actions from distributions with a desired minimum entropy, is investigated. Pilot experiments have been carried out to show how the proposed method speeds up the training. The proposed approach can be applied to any Advantage-based Reinforcement Learning algorithm.
Structure of excited vortices with higher angular momentum in Bose-Einstein condensates
Creators: name: Tang, Jian-Ming
Publisher: name: arXiv
Year: 2003
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: The structure of vortices in Bose-Einstein condensed atomic gases is studied taking into account many-body correlation effects. It is shown that for excited vortices the particle density in the vortex core increases as the angular momentum of the system increases. The core density can increase by several times with only a few percent change in the angular momentum. This result provides an explanation for the observations in which the measured angular momentum is higher than the estimation based on counting the number of vortices, and the visibility of the vortex cores is simultaneously reduced. The calculated density profiles for the excited vortices are in good agreement with experimental measurements.
description: 4 pages, 1 figure
An Efficient Numerical Method for the Generalised Kolmogorov Equation
Creators: name: Gatti, Davide
name: Remigi, Alberto
name: Chiarini, Alessandro
name: Cimarelli, Andrea
name: Quadrio, Maurizio
Publisher: name: arXiv
Year: 2019
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: An efficient algorithm for computing the terms appearing in the Generalised Kolmogorov Equation (GKE) written for the indefinite plane channel flow is presented. The algorithm, which features three distinct strategies for parallel computing, is designed such that CPU and memory requirements are kept to a minimum, so that high-Re wall-bounded flows can be afforded. Computational efficiency is mainly achieved by leveraging the Parseval's theorem for the two homogeneous directions available in the plane channel geometry. A speedup of 3-4 orders of magnitude, depending on the problem size, is reported in comparison to a key implementation used in the literature. Validation of the code is demonstrated by computing the residual of the GKE, and example results are presented for channel flows at Re_τ=200 and Re_τ=1000, where for the first time they are observed in the whole four-dimensional domain. It is shown that the space and scale properties of the scale-energy fluxes change for increasing values of the Reynolds number. Among all scale-energy fluxes, the wall-normal flux is found to show the richest behaviour for increasing streamwise scales.
title: Hydrogen Stable Isotope Constraints on Hydration of Colorado Plateau Lower Crust From Oligocene-Miocene Navajo Volcanic Field Xenoliths
Creators: name: Litton, Shelby Dianne
Publisher: name: Utah State University
Year: 2024

description: Understanding flat-slab subduction is crucial as it involves the horizontal movement of an oceanic plate beneath a continental margin over a long distance. This tectonic process is widespread yet not fully understood, particularly regarding how it influences the chemical makeup of the continental plate and recycling in the hydrosphere. By analyzing isotopes, which are variations of certain elements found in minerals and water, we can gain insights into the sources of chemicals and geological processes at play. Our study area included six locations within the Navajo volcanic field (NVF), a region in the Colorado Plateau. We analyzed 23 lower crustal xenolith samples; xenoliths are fragments of rock brought up from deep within the interior of the by volcanic eruptions. Using a polarized microscope, we identified hydrous mineral phases that would give indications of past water-rock interactions. These minerals included hornblende, actinolite, biotite, muscovite, clinozoisite, epidote, and chlorite. By measuring the isotopic composition of hydrogen within these minerals, we can track the history of the rock’s interaction with water. Our findings revealed that during the Laramide orogeny, water from deep within the Earth’s crust, possibly originating from a tectonic plate called the Farallon slab, infiltrated the crustal rocks of the Colorado Plateau. This water caused changes in the mineralogy, leading to distinct isotopic signatures that we could measure. Interestingly, we found that isotopic composition of certain minerals from the Mules Ear and Moses Rock intrusions suggested a complex interaction between the rocks and the infiltrating water. This study explores how aqueous fluids moved from the flat slab to the continental plate above, ultimately impacting the mineralogical conditions of the lower crust and gives insights into complex interactions between fluids and rocks deep within the Earth’s crust.
Kinetic Derivation of the Hydrodynamic Equations for Capillary Fluids
Creators: name: De Martino, S.
name: Falanga, M.
name: Tzenov, S. I.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: Based on the generalized kinetic equation for the one-particle distribution function with a small source, the transition from the kinetic to the hydrodynamic description of many-particle systems is performed. The basic feature of this new technique to obtain the hydrodynamic limit is that the latter has been partially incorporated into the kinetic equation itself. The hydrodynamic equations for capillary fluids are derived from the characteristic function for the local moments of the distribution function. The Fick's law appears as a consequence of the transformation law for the hydrodynamic quantities under time inversion.
description: 4 pages
An Integrated Photonic Platform for Rare-Earth Ions in Thin Film Lithium Niobate
Creators: name: Dutta, Subhojit
name: Goldschmidt, Elizabeth A.
name: Barik, Sabyasachi
name: Saha, Uday
name: Waks, Edo
Publisher: name: arXiv
Year: 2019
Subjects: subject: Optics (physics.optics)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Rare-earth ion ensembles doped in single crystals are a promising materials system with widespread applications in optical signal processing, lasing, and quantum information processing. Incorporating rare-earth ions into integrated photonic devices could enable compact lasers and modulators, as well as on-chip optical quantum memories for classical and quantum optical applications. To this end, a thin film single crystalline wafer structure that is compatible with planar fabrication of integrated photonic devices would be highly desirable. However, incorporating rare-earth ions into a thin film form-factor while preserving their optical properties has proven challenging. We demonstrate an integrated photonic platform for rare-earth ions doped in a single crystalline thin film on insulator. The thin film is composed of lithium niobate doped with Tm3+. The ions in the thin film exhibit optical lifetimes identical to those measured in bulk crystals. We show narrow spectral holes in a thin film waveguide that require up to 2 orders of magnitude lower power to generate than previously reported bulk waveguides. Our results pave way for scalable on-chip lasers, optical signal processing devices, and integrated optical quantum memories.
Salusin-α mitigates diabetic nephropathy via inhibition of the Akt/mTORC1/p70S6K signaling pathway in diabetic rats
Creators: name: Wang, Wen-Juan
name: Jiang, Xia
name: Gao, Chang-Chun
name: Chen, Zhi-Wei
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Salusin-α is a bioactive peptide that protects against atherosclerosis and hepatosteatosis. Serum salusin-α level is declined in patients suffering with renal insufficiency. However, it is still undefined whether salusin-α plays a role in diabetic nephropathy. The present study was designed to investigate the potential roles of salusin-α in diabetic renal disease. Herein, we demonstrated that the salusin-α levels in both plasma and kidney tissues from diabetic rats were obviously downregulated. Exogenous administration of salusin-α eliminated the typical characteristics of diabetic nephropathy. Salusin-α treatment decreased renal fibrosis, which was related with reduced epithelial-mesenchymal transition (EMT) of renal tubular epithelial cells. Injection of salusin-α suppressed the production of reactive oxygen species (ROS) via attenuation of NADPH oxidase subunits protein expressions and recovery of the antioxidant system. Mechanistically, the activated Akt/mTORC1/p70S6K signaling pathway in diabetic nephropathy was counteracted by salusin-α treatment. Our results demonstrated that salusin-α exerted protective effect against diabetic nephropathy via reduced oxidative stress and fibrosis, dependent on inactivation of the Akt/mTORC1/p70S6K signaling cascade. Salusin-α may be considered as a promising target for the treatment of diabetic nephropathy.
Cyphoderus gallicus Delamare Deboutteville 1948
Creators: name: Thibaud, Jean-Marc
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Paronellidae
Cyphoderus
Cyphoderus gallicus

description: Cyphoderus gallicus Delamare Deboutteville, 1948
Cyphoderus gallicus Delamare Deboutteville, 1948c: 368.
DISTRIBUTION. — Haute-Savoie. Chamonix (Delamare Deboutteville 1948c).
Pyrénées-Orientales. Mas Reig à Banyuls-sur-Mer (Delamare Deboutteville 1948c, Megacyphoderus gallicus).
description: Published as part of Thibaud, Jean-Marc, 2017, Catalogue des collemboles de France, pp. 297-436 in Zoosystema 39 (3) on page 377, DOI: 10.5252/z2017n3a1, http://zenodo.org/record/5496272
Force and acceleration sensing with optically levitated nanogram masses at microkelvin temperatures
Creators: name: Monteiro, Fernando
name: Li, Wenqiang
name: Afek, Gadi
name: Li, Chang-ling
name: Mossman, Michael
name: Moore, David C.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Optics (physics.optics)
subject: Instrumentation and Detectors (physics.ins-det)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: This paper demonstrates cooling of the center-of-mass motion of 10 $μ$m-diameter optically levitated silica spheres to an effective temperature of $50\pm22 μ$K, achieved by minimizing the technical pointing noise of the trapping laser. This low noise leads to an acceleration and force sensitivity of $95\pm41$ n$g/\sqrt{\mathrm{Hz}}$ ($g = 9.8$ m/s$^2$) and $0.95\pm0.11$ aN$/\sqrt{\mathrm{Hz}}$, respectively, at frequencies near 50 Hz. This force sensitivity is comparable to that demonstrated for optically levitated nanospheres that are $10^4$ times less massive, corresponding to an acceleration sensitivity that is several orders of magnitude better. It is further shown that under these conditions the spheres remain stably trapped at pressures of $\sim 10^{-7}$ mbar with no active cooling for periods longer than a day. Feedback cooling is still necessary in the moderate-pressure regime, motivating a comprehensive study of the loss mechanisms of the microspheres and providing better understanding of the requirements for feedback-free optical trapping in vacuum. This work can enable high-sensitivity searches for accelerations and forces acting on micron-sized masses, including those that could be produced by new physics beyond the Standard Model.
Cheumatopsyche lestoni Gibbs 1973
Creators: name: Oláh, János
name: Johanson, Kjell Arne
name: Barnard, Peter C.
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Trichoptera
Hydropsychidae
Cheumatopsyche
Cheumatopsyche lestoni

description: Cheumatopsyche lestoni Gibbs, 1973
 Cheumatopsyche lestoni Gibbs, 1973: 395.
 Type locality: Ghana.
description: Published as part of Oláh, János, Johanson, Kjell Arne & Barnard, Peter C., 2008, Revision of the Oriental and Afrotropical species of Cheumatopsyche Wallengren (Hydropsychidae, Trichoptera), pp. 1-171 in Zootaxa 1738 on page 48
A Soft X-ray Component in the Abell 754 Cluster
Creators: name: Henriksen, Mark J.
name: Hudson, Daniel S.
name: Tittley, Eric
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We have analyzed the Chandra, BeppoSax, and ROSAT observations of Abell 754 and report evidence of a soft, diffuse X-ray component. The emission is peaked in the cluster center and is detected out to 8' from the X-ray center. Fitting a thermal model to the combined BeppoSax and PSPC spectra show excess emission below 1 keV in the PSPC and above 100 keV in the BeppoSax PDS. The source 26W20 is in the field of view of the PDS. The addition of a powerlaw with the spectral parameters measured by Silverman et al. (1998) for 26W20 successfully models the hard component in the PDS. The remaining excess soft emission can be modeled by either a low temperature, 0.75 - 1.03 keV component, or by a powerlaw with a steep spectral index, 2.3. Addition of a second thermal component model provides a much better fit to the data than does the addition of a non-thermal component. The Chandra temperature map does not show any region cooler than 6.9 keV within the region where the cool component was detected. Simulations of the emission from embedded groups were performed and compared with the Chandra temperature map which show groups are a plausible source of ~1 keV emission. The cool component is centrally peaked in the cluster and the gas density and temperature are relatively high arguing against the WHIM as the source of the X-ray emission. X-ray emission from elliptical galaxies is not high enough to provide the total cool component luminosity, 7.0x10^43 ergs s^-1. The peak of the cool component is located between the low frequency radio halos arguing against a non-thermal interpretation for the emission. We conclude that emission from embedded groups is the most likely origin of the cool component in Abell 754.
description: Submitted to ApJ
The Top Ten solar analogs in the ELODIE library
Creators: name: Soubiran, C.
name: Triaud, A.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Several solar analogs have been identified in the library of high resolution stellar spectra taken with the echelle spectrograph ELODIE. A purely differential method has been used, based on the chi2 comparison of a large number of G dwarf spectra to 8 spectra of the Sun, taken on the Moon and Ceres. HD 146233 keeps its status of closest ever solar twin (Porto de Mello & da Silva 1997). Some other spectroscopic analogs have never been studied before, while the two planet-host stars HD095128 and HD186427 are also part of the selection. The fundamental parameters found in the literature for these stars show a surprising dispersion, partly due to the uncertainties which affect them. We discuss the advantages and drawbacks of photometric and spectroscopic methods to search for solar analogs and conclude that they have to be used jointly to find real solar twins.
description: 12 pages, accepted in A&A
A Neural Network Assembly Memory Model Based on an Optimal Binary Signal Detection Theory
Creators: name: Gopych, Petro M.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Artificial Intelligence (cs.AI)
subject: Information Retrieval (cs.IR)
subject: Neural and Evolutionary Computing (cs.NE)
subject: Neurons and Cognition (q-bio.NC)
subject: Quantitative Methods (q-bio.QM)
subject: FOS: Computer and information sciences
subject: FOS: Biological sciences
subject: I.2; E.4; J.3; J.4

description: A ternary/binary data coding algorithm and conditions under which Hopfield networks implement optimal convolutional or Hamming decoding algorithms has been described. Using the coding/decoding approach (an optimal Binary Signal Detection Theory, BSDT) introduced a Neural Network Assembly Memory Model (NNAMM) is built. The model provides optimal (the best) basic memory performance and demands the use of a new memory unit architecture with two-layer Hopfield network, N-channel time gate, auxiliary reference memory, and two nested feedback loops. NNAMM explicitly describes the dependence on time of a memory trace retrieval, gives a possibility of metamemory simulation, generalized knowledge representation, and distinct description of conscious and unconscious mental processes. A model of smallest inseparable part or an "atom" of consciousness is also defined. The NNAMM's neurobiological backgrounds and its applications to solving some interdisciplinary problems are shortly discussed. BSDT could implement the "best neural code" used in nervous tissues of animals and humans.
description: The revised contribution submitted to the 1st International Workshop on the Future of Neural Networks (FUNN 2003) held on July 5, 2003, Eindhoven, the Netherlands (Workshop affiliated to ICALP 2003, June 30 - July 4, 2003), 12 pages, 3 Figures, 23 references