cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Orphium frutescens E. Mey.
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Gentianales
Gentianaceae
Orphium
Orphium frutescens

description: Chironia caryophylloides Linnaeus, Centuria II Plantarum: 12. 1756.
"Habitat ad Cap. B. Spei. Burmannus." RCN: 1520.
Type not designated.
Original material: [icon] in Burman, Rar. Afric. Pl.: 205, t. 74, f. 1. 1739.
 Current name:  Orphium frutescens  (L.) E. Mey. (Gentianaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part C), pp. 370-473 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 412, DOI: 10.5281/zenodo.291971
title: ADCO, Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome V, Cart. 189 (11 H 74), 316 folios, f. 0172v
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome V, Archives départementales de la Côte-d'Or, Cart. 189 (11 H 74), 316 folios, f. 0172v, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome V, Archives départementales de la Côte-d'Or, Cart. 189 (11 H 74), 316 folios, f. 0172v, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Design, synthesis and insecticidal activity of benzenesulfonamide derivatives containing various alkynyl, alkenyl and cyclopropyl groups in para position
Creators: name: Zhu, Jian-Jun
name: Guo, Tao
name: Liu, Hong-Xiang
name: Tan, Xin-Ru
name: Zhang, Zi-Wei
name: Wu, Wen-Jun
name: Zhang, Ji-Wen
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified

description: Celangulin V is a natural β-dihydrofuran sesquiterpene polyester with anti Mythimna separate activity and unique mechanism of action. Further study showed that its target was the H subunit of V-ATPase in the midgut of M. separate. Thus, combined with the previous work, thirty-two benzene sulfonamide derivatives were systematically synthesised to discover efficient and low-budget insecticidal candidates for the H subunit of V-ATPase. Screening results showed that compounds C2, C4, C5, C6 and C8 could significantly cause death of tested third-instar larvae of M. separate, and provided the corresponding LC50 values of 0.844, 0.953, 0.705, 0.599 and 0.887 mg/mL, which were extremely better than Celangulin V (LC50 = 11.5 mg/mL). The docking results indicated that this novel framework might target H subunit of V-ATPase. Given these excellent bioactivity results, this kind of sulfonamide framework could provide a suitable point for exploring highly efficient insecticidal agents.
Four organosulfur compounds from the seeds of Capsella bursa-pastoris and their anti-inflammatory activities
Creators: name: Wei, Zhen-Zhen
name: Zhou, Ti-Qiang
name: Xia, Zi-Ming
name: Liu, Si-Fan
name: Li, Min
name: Zhang, Guang-Jie
name: Tian, Ying
name: Li, Bin
name: Wang, Lin
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Biochemistry
subject: Pharmacology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified

description: Phytochemical investigation of the seeds of Capsella bursa-pastoris led to the isolation of four organosulfur compounds. There were two new compounds, 10-methylsulfinyl-decanamide (1) and 11-methylsulfinyl-undecanamide (2), along with two known compounds (3 − 4), which all have a sulfoxide group and an amide or a nitrile group. Their chemical structures were elucidated by analysing UV, IR, ESI-MS and NMR spectroscopy. In addition, compounds 1 − 4 were evaluated for their anti-inflammatory activities by using LPS-induced RAW 264.7 cells. Compounds 1 − 4 exhibited potential anti-inflammatory activities on NO release characterised by decreasing the mRNA expression levels of inducible NO synthase (iNOS), cytokines cyclooxygenase-2 (COX-2) and interleukin 6 (IL-6).
Chironia jasminoides Linnaeus 1760
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Gentianales
Gentianaceae
Chironia
Chironia jasminoides

description: Chironia jasminoides Linnaeus, Plantae Rariores Africanae: 9. 1760.
["Habitat ad Cap. b. spei."] Sp. Pl., ed. 2, 1: 272 (1762). RCN: 1514.
Type not designated.
Original material: Herb. Burman, 3 sheets (G).
 Current name:  Chironia jasminoides  L. (Gentianaceae).
 Note: Marais & Verdoorn (in Dyer & al., Fl. Southern Africa 26: 224. 1963) stated that the type was "based on Burmann’s specimens from the Cape, seen by Linnaeus and evidently not preserved but specimens in Burmann’s herbarium fit the description".
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part C), pp. 370-473 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 412, DOI: 10.5281/zenodo.291971
Quantum from principles without assuming definite causal structure
Creators: name: Jia, Ding
Publisher: name: arXiv
Year: 2018
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: There has been a body of works deriving the complex Hilbert space structure of quantum theory from axioms/principles/postulates to deepen our understanding about quantum theory and to reveal ways to go beyond it to resolve foundational issues. Recent progresses in incorporating indefinite causal structure into physical theories suggest that a more comprehensive understanding of both quantum theory and the theory beyond it accounts for indefinite causal structure. We formulate a framework of physical theories without assuming definite causal structure and identify postulates that single out the complex Hilbert space structure. More than one complex Hilbert space theory is compatible with the postulates, which leaves the room for the further search of the best among these theories.
description: 21 pages
Hand-On Image Processing with PySAP
Creators: name: Farrens, Samuel
Publisher: name: Zenodo
Year: 2021

description: PySAP (Python Sparse data Analysis Package) is an open-source, multidisciplinary image processing tool developed in collaboration between astrophysicists and biomedical imaging experts at CEA Paris-Saclay through the COSMIC project (see Farrens et. al (2020)). The objective of this collaboration being to share the image processing experience gained in different domains with the community. In this hands-on session I will demonstrate some of the "out of the box" image processing tools available in the PySAP-MRI and PySAP-Astro plugins. In particular, I will focus on some standard problems like denoising or deconvolving galaxy images, and reconstructing subsampled MRI scans of a brain. I will also show how to use some of the modular features of PySAP to design image processing tools for new problems of even different imaging domains. Throughout the session I will endeavour to provide some basic technical background and present the problems such that it should be possible for everyone in the audience to follow. I will also include links to tutorials for more in-depth explanations of some of these topics for those who are interested. Finally, I will reserve a few minutes at the end to explain how you can contribute to the development of PySAP.
description: {"references": ["Farrens et al. (2020), 10.1016/j.ascom.2020.100402"]}
Additional file 1: of Judging residentsâ performance: a qualitative study using grounded theory
Creators: name: Duitsman, Marrigje
name: Fluit, Cornelia
name: Goot, Wieke
name: Kate-Booij, Marianne
name: Graaf, Jacqueline
name: Jaarsma, Debbie
Publisher: name: figshare
Year: 2019
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Appendix 1 Semi-structured interview guide program director. The semi-structured interview guide we used for the interviews. (DOCX 54 kb)
Two Topics concerning Black Holes: Extremality of the Energy, Fractality of the Horizon
Creators: name: Sorkin, Rafael D.
Publisher: name: arXiv
Year: 1995
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We treat two aspects of the physics of stationary black holes. First we prove that the proportionality, d(energy) ~ d(area) for arbitrary perturbations (``extended first law''), follows directly from an extremality theorem drawn from earlier work. Second we consider quantum fluctuations in the shape of the horizon, concluding heuristically that they exhibit a fractal character, with order lambda fluctuations occurring on all scales lambda below M^{1/3} in natural units.
description: 18 pages, plainTeX, 2 postscript figures (Figures for automatic inclusion are in a separate file which you should receive with the .tex file. For instructions on decoding and including them (or omitting them to avoid error messages if your system can't handle them) see the box at the beginning of the tex file for this paper.)
VRT effects on residual dizziness (Heydari et al., 2021)
Creators: name: Heydari, Maryam
name: Ahadi, Mohsen
name: Jalaei, Bahram
name: Maarefvand, Mohammad
name: Talebi, Hossein
Publisher: name: ASHA journals
Year: 2021
Subjects: subject: Physiology
subject: FOS: Biological sciences
subject: 110317 Physiotherapy
subject: FOS: Clinical medicine

description: Purpose: The aim of the study was to evaluate the additional effect of vestibular rehabilitation therapy (VRT) compared with the modified Epley procedure alone on residual dizziness after a successful modified Epley procedure in patients with posterior canal benign paroxysmal positional vertigo (BPPV).Method: In this cross-sectional analytical comparative study, 47 patients (35 women and 12 men) aged 18–80 years with posterior canal BPPV were randomly assigned to one of two following groups: the control group, who received the modified Epley procedure only, and the VRT group, who received the modified Epley procedure plus vestibular rehabilitation for 4 weeks. Outcome measures, including the Dizziness Handicap Inventory (DHI), the Vertigo Symptom Scale–Long Version (VSS-L), and the Vertigo Symptom Scale–Short Form (VSS-SF), were conducted on the same session before initial therapy (T1), at 48 hr later (T2), and at 4 weeks later (T3). Presence or absence of residual dizziness was evaluated at T2.Results: Residual dizziness was found in 20 (42.6%) patients after a successful modified Epley procedure. There was no statistically significant difference between the mean DHI, VSS-L, and VSS-SF scores at T1, T2, and T3 in patients who manifested with residual dizziness and those without residual dizziness in both groups. The average DHI, VSS-L, and VSS-SF score reduced during the time in both groups. These results were demonstrated that the VRT group and the control group have similar reductions in symptoms after treatment with the VRT plus modified Epley procedure and the modified Epley procedure only, respectively.Conclusions: Residual dizziness is a common condition after a successful modified Epley procedure for BPPV. The VRT plus modified Epley procedure is as effective as modified Epley procedure alone in the management of residual dizziness. Further studies with supervised and customized VRT and longer follow-up periods are needed.
Supplemental Material S1. Self-directed exercises.
Heydari, M., Ahadi, M., Jalaei, B., Maarefvand, M., & Talebi, H. (2021). The additional effect of vestibular rehabilitation therapy on residual dizziness after successful modified Epley procedure for posterior canal benign paroxysmal positional vertigo. American Journal of Audiology. Advanced online publication. https://doi.org/10.1044/2021_AJA-20-00171
MOESM2 of Using hyperspectral analysis as a potential high throughput phenotyping tool in GWAS for protein content of rice quality
Creators: name: Sun, Dawei
name: Cen, Haiyan
name: Weng, Haiyong
name: Wan, Liang
name: Abdalla, Alwaseela
name: El-Manawy, Ahmed
name: Zhu, Yueming
name: Zhao, Nan
name: Fu, Haowei
name: Tang, Juan
name: Li, Xiaolong
name: Zheng, Hongkun
name: Shu, Qingyao
name: Liu, Fei
name: He, Yong
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Additional file 2: Fig. S1. The setting of the hyperspectral data acquisition system.
SU(3) breaking and baryon magnetic moments
Creators: name: Bos, J. W.
name: Chang, D.
name: Lee, S. C.
name: Lin, Y. C.
name: Shih, H. H.
Publisher: name: arXiv
Year: 1996
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We show that the magnetic moments of the octet baryons can be fitted to an accuracy of 1.5 percent by a phenomenological Lagrangian in which SU(3) breaking corrections appear only linearly. This is in contrast to conventional chiral perturbation theory in which corrections non-analytic in SU(3) breaking dominate and tend to spoil the agreement with the data. Motivated by this observation, we propose a modified scheme for chiral perturbation theory that gives rise to a similar linear breaking of SU(3) symmetry. (Pacs 13.40.Em, 14.20.-c, 11.30.Rd)
description: 7 pages of Latex, no figures, version to be published in Chin. J. Phys. (Taipei) (1997)
New possibilities of old soft pomeron in DIS
Creators: name: Desgrolard, P.
name: Lengyel, A.
name: Martynov, E.
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: A traditional Regge model with a $Q^2$-independent Pomeron intercept closed (or equal) to one is constructed in order to describe the available data on the proton structure function. A Dipole Pomeron model which does not explicitly violate unitarity is developed and investigated. An excellent agreement with the 1209 data is found ($χ^2/{dof}=1.11$) in the whole kinematical domain investigated by experiments. A comparison of the model with already existing ones is made. The $x-$, $Q^2-$slopes and the effective intercept are discussed as $Q^2$ and $x$ functions.
description: 19 pages LaTeX, 10 eps figures included, one of figure captions is corrected
ECONOMETRIC MODELING OF THE DEVELOPMENT OF TRANSPORT LOGISTICS IN THE REGIONS
Creators: name: Maxmanov, Asliddin
Publisher: name: Zenodo
Year: 2024

description: Experts from international organizations such as the World Bank, the United Nations Conference on Trade and Development (UNCTAD), the European Commission, the Eurasian Economic Commission and other world organizations play a major role in studying the problems of transport logistics and forming the relevant information base.
SIMCor. Deliverable 4.6 - SOPs for validation of in silico models (BIO, IIB, CHA, M36)
Creators: name: Arndt, Andreas
name: Romberg, Jan
name: Stiem, Michael
name: Borowski, Finja
name: Supp, Laura
name: Oldenburg, Jan
name: Brüning, Jan
name: Goubergrits, Leonid
Publisher: name: Zenodo
Year: 2023

description: This SOP guides on how to apply the ASME V&V 40 standard for in-silico model validation, with examples of the clinical endpoints device perforation, device migration, thrombosis for the pulmonary artery pressure sensor as well as thrombosis, paravalvular leakage and durability for the transcatheter aortic valve. Emphasis is placed on the application of a tiered validation approach of the in-silico models, consisting of a low-fidelity validation to gain trust in the engineering metrics output in bench tests, ex-vivo experiments and acute animal trials, as well as high-fidelity validation steps in chronic animal trials and (retrospective) clinical trials supported by tests in virtual cohorts. The results are subjected to an applicability analysis. The validation and applicability assessment steps are derived from the applicable standards, extended where necessary, and applied to the specific use cases. Detailed examples for both use cases can be found in the two appendices.

 

SIMCor (In-Silico testing and validation of Cardiovascular IMplantable devices) has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 101017578.
Additional file 2: of Transcriptome-wide mining, characterization, and development of microsatellite markers in Lychnis kiusiana (Caryophyllaceae)
Creators: name: Seongjun Park
name: Sungwon Son
name: Myungju Shin
name: Fujii, Noriyuki
name: Hoshino, Takuji
name: Park, SeonJoo
Publisher: name: figshare
Year: 2019
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Figure S1. The distributions of the major repeat types in the Lychnis kiusiana leaf transcriptome. Figure S2. Box plots of the sizes of different repeat motifs. Figure S3. Box plots of the sizes of different repeat motifs in different genic regions. Figure S4. Linkage disequilibrium (LD) map for the 25 transcriptomic SSR markers. (PDF 556 kb)
CD1 lipidomes reveal lipid-binding motifs and size-based antigen-display mechanisms
Creators: name: Huang, Shouxiong
name: Shahine, Adam
name: Cheng, Tan-Yun
name: Chen, Yi-Ling
name: Ng, Soo Weei
name: Balaji, Gautham R
name: Farquhar, Rachel
name: Gras, Stephanie
name: Hardman, Clare S
name: Altman, John D
name: Tahiri, Nabil
name: Minnaard, Adriaan J
name: Ogg, Graham S
name: Mayfield, Jacob A
name: Rossjohn, Jamie
name: Moody, D Branch
Publisher: name: La Trobe
Year: 2023
Subjects: classificationCode: 32
subject: Biomedical and clinical sciences
classificationCode: 31
subject: Biological sciences
subject: FOS: Biological sciences
classificationCode: 3101
subject: Biochemistry and cell biology

description: The CD1 system binds lipid antigens for display to T cells. Here, we solved lipidomes for the four human CD1 antigen-presenting molecules, providing a map of self-lipid display. Answering a basic question, the detection of >2,000 CD1-lipid complexes demonstrates broad presentation of self-sphingolipids and phospholipids. Whereas peptide antigens are chemically processed, many lipids are presented in an unaltered form. However, each type of CD1 protein differentially edits the self-lipidome to show distinct capture motifs based on lipid length and chemical composition, suggesting general antigen display mechanisms. For CD1a and CD1d, lipid size matches the CD1 cleft volume. CD1c cleft size is more variable, and CD1b is the outlier, where ligands and clefts show an extreme size mismatch that is explained by uniformly seating two small lipids in one cleft. Furthermore, the list of compounds that comprise the integrated CD1 lipidome supports the ongoing discovery of lipid blockers and antigens for T cells.
A diffuse-interface model for smoothed particle hydrodynamics
Creators: name: Xu, Zhijie
name: Meakin, Paul
name: Tartakovsky, Alexandre
Publisher: name: arXiv
Year: 2018
Subjects: subject: Computational Physics (physics.comp-ph)
subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: Diffuse-interface theory provides a foundation for the modeling and simulation of microstructure evolution in a very wide range of materials, and for the tracking/capturing of dynamic interfaces between different materials on larger scales. Smoothed particle hydrodynamics (SPH) is also widely used to simulate fluids and solids that are subjected to large deformations and have complex dynamic boundaries and/or interfaces, but no explicit interface tracking/capturing is required, even when topological changes such as fragmentation and coalescence occur, because of its Lagrangian particle nature. Here we developed an SPH model for single-component two-phase fluids that is based on diffuse-interface theory. In the model, the interface has a finite thickness and a surface tension that depend on the coefficient, k, of the gradient contribution to the Helmholtz free energy functional and the density dependent homogeneous free energy. In this model, there is no need to locate the surface (or interface) or to compute the curvature at and near the interface. One- and two-dimensional SPH simulations were used to validate the model.
Increasing the performance of the superconducting spin valve using a Heusler alloy
Creators: name: Kamashev, A. A.
name: Validov, A. A.
name: Schumann, J.
name: Kataev, V.
name: Büchner, B.
name: Fominov, Y. V.
name: Garifullin, I. A.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We have studied superconducting properties of the spin-valve thin layer heterostructures CoO$_x$/F1/Cu/F2/Cu/Pb where the ferromagnetic F1 layer was standardly made of Permalloy whereas for the F2 layer we have taken a specially prepared film of the Heusler alloy Co$_2$Cr$_{1-x}$Fe$_x$Al with a small degree of spin polarization of the conduction band. The heterostructures demonstrate a significant superconducting spin-valve effect, i.e. a complete switching on and off of the superconducting current flowing through the system by manipulating the mutual orientations of the magnetization of the F1 and F2 layers. The magnitude of the effect is doubled in comparison with the previously studied analogous multilayers with the F2 layer made of the strong ferromagnet Fe. Theoretical analysis shows that a drastic enhancement of the switching effect is due to a smaller exchange field in the heterostructure coming from the Heusler film as compared to Fe. This enables to approach almost ideal theoretical magnitude of the switching in the Heusler-based multilayer with the F2 layer thickness of $\sim 1$\,nm.
Self-organization in BML Traffic Flow Model: Analytical Approaches
Creators: name: Shi, Y.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Analytical investigations are made on BML two-dimensional traffic flow model with alternative movement and exclude-volume effect. Several exact results are obtained, including the upper critical density above which there are only jamming configurations asymptotically, and the lower critical density below which there are only moving configurations asymptotically. The jamming transition observed in the ensemble average velocity takes place at another critical density $p_{c}(N)$, which is dependent on the lattice size $N$ and is in the intermediate region between the lower and upper critical densities. It is suggested that $p_{c}(N)$ is proportional to a power of $N$, in good agreement with the numerical simulation. The order parameter of this jamming transition is identified.
description: 5 pages, 2 figures, revtex
Matrix Strings in Two-dimensional Yang-Mills Theory
Creators: name: Kogan, Ian I.
name: Szabo, Richard J.
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We describe the structure of string vacuum states in the supersymmetric matrix model for M theory compactified on a circle in the large-N limit. We show that the theory admits topological instanton field configurations which at short-distance scales reduce to ordinary Yang-Mills instantons that interpolate between degenerate vacua of the theory. We show that there exists further classes of hadronic strings associated with the D-string super-fields. We discuss the relationships between these non-perturbative string states and rigid QCD strings, critical strings, and membrane states.
description: 15 pages LaTeX; 1 .ps file included, uses psfig.sty
Additional file 1: of Development and validation of a telephone classification interview for common chronic headache disorders
Creators: name: Potter, Rachel
name: Siew Hee
name: Griffiths, Frances
name: Dodd, Katherine
name: Hoverd, Eleanor
name: Underwood, Martin
name: Matharu, Manjit
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology

description: Voting results from the consensus conference pleanary session. (DOCX 30 kb)
Shadowing Aspects of Nuclear Parton Distributions
Creators: name: Kumano, S.
Publisher: name: arXiv
Year: 1996
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Various shadowing aspects of nuclear parton distributions are discussed in a parton-model framework. We explain existing $x$ dependent data of $F_2^A/F_2^D$, then the model is applied to a flavor asymmetry $\bar u-\bar d$ in a nucleus, to shadowing in valence-quark distributions, and to nuclear dependence of $Q^2$ evolution. First, we find that a finite nuclear $\bar u-\bar d$ distribution could be possible due to nuclear interactions even in the flavor symmetric case in the nucleon ($\bar u -\bar d$=0). Second, it is indicated that valence-quark shadowing could be used for discriminating among various shadowing models. Third, we find that nuclear dependence of $Q^2$ evolution $\partial [F_2^{Sn}/F_2^C]/ \partial [\ln Q^2]$, which was found by NMC, is essentially understood by modification of parton distributions in nuclei. However, higher-twist effects in nuclear interactions could be tested by studying the details of the nuclear $Q^2$ evolution.
description: 10 pages, LATEX, 5 eps figures. Talk given at the Joint Japan-Australia Workshop on "Quarks, Hadrons, and Nuclei", Adelaide, Australia, Nov. 15 - 24, 1995. Complete postscript file including the figures is available at ftp://ftp.cc.saga-u.ac.jp/pub/paper/riko/quantum1/saga-he-95.ps.gz or at http://www.cc.saga-u.ac.jp/saga-u/riko/physics/quantum1/kumano.html Email: kumanos@cc.saga-u.ac.jp
Additional file 1: of Transcriptome-wide mining, characterization, and development of microsatellite markers in Lychnis kiusiana (Caryophyllaceae)
Creators: name: Seongjun Park
name: Sungwon Son
name: Myungju Shin
name: Fujii, Noriyuki
name: Hoshino, Takuji
name: Park, SeonJoo
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Plant Biology

description: Table S1. General information for the microsatellite analysis. Table S2. Distribution and characteristics of the microsatellites in different transcript regions. Table S3. Results of the KEGG pathway analysis. Table S4. Blast results of 9563 transcripts that contain SSRs in Lychnis leaf transcriptome. Table S5. Blast results of the 39 ORFs showing positive selection (dN/dSâ >â 1). Table S6. Blast results of the 25 newly developed transcriptomic SSR markers. Table S7. NCBI accession numbers, primer sequences and characterization of the 25 microsatellite loci developed for Lychnis kiusiana. (DOCX 1498 kb)
Cellular Models for River Networks
Creators: name: Caldarelli, G.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: A cellular model introduced for the evolution of the fluvial landscape is revisited using extensive numerical and scaling analyses. The basic network shapes and their recurrence especially in the aggregation structure are then addressed. The roles of boundary and initial conditions are carefully analyzed as well as the key effect of quenched disorder embedded in random pinning of the landscape surface. It is found that the above features strongly affect the scaling behavior of key morphological quantities. In particular, we conclude that randomly pinned regions (whose structural disorder bears much physical meaning mimicking uneven landscape-forming rainfall events, geological diversity or heterogeneity in surficial properties like vegetation, soil cover or type) play a key role for the robust emergence of aggregation patterns bearing much resemblance to real river networks.
description: 7 pages, revtex style, 14 figures
The minimum area, the flux tube, and Thomas precession
Creators: name: Williams, K.
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Quark confinement in Buchmüller's picture of a rotating flux tube is reconsidered in the context of a minimum area evaluation of the Wilson loop. The question is asked whether resulting spin independent dynamics are consistent with Thomas precessional spin dependence leading from electric confinement. The answer appears to be in the negative; self-consistency of the picture found in the literature is examined and explained in simple classical terms, with illustrations.
description: Latex, 13 pages
The Statistical Physics of Real-World Networks
Creators: name: Cimini, Giulio
name: Squartini, Tiziano
name: Saracco, Fabio
name: Garlaschelli, Diego
name: Gabrielli, Andrea
name: Caldarelli, Guido
Publisher: name: arXiv
Year: 2018
Subjects: subject: Physics and Society (physics.soc-ph)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Information Theory (cs.IT)
subject: Social and Information Networks (cs.SI)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: In the last 15 years, statistical physics has been a very successful framework to model complex networks. On the theoretical side, this approach has brought novel insights into a variety of physical phenomena, such as self-organisation, scale invariance, emergence of mixed distributions and ensemble non-equivalence, that display unconventional features on heterogeneous networks. At the same time, thanks to their deep connection with information theory, statistical physics and the principle of maximum entropy have led to the definition of null models for networks reproducing some features of real-world systems, but otherwise as random as possible. We review here the statistical physics approach and the various null models for complex networks, focusing in particular on the analytic frameworks reproducing the local network features. We then show how these models have been used to detect statistically significant and predictive structural patterns in real-world networks, as well as to reconstruct the network structure in case of incomplete information. We further survey the statistical physics models that reproduce more complex, semi-local network features using Markov chain Monte Carlo sampling, as well as the models of generalised network structures such as multiplex networks, interacting networks and simplicial complexes.
description: accepted version (after revision)
SIMCor. Deliverable 8.3 - Constitutive vessel model (TUG, M20)
Creators: name: Rolf-Pissarczyk, Malte
name: Terzano, Michele
Publisher: name: Zenodo
Year: 2022

description: The deliverable reports all relevant information regarding the development of a simplified constitutive model to describe the material behaviour of the vessel wall, which will be used in combination with the virtual device models for preliminary analyses requiring a reduced computational effort. For this purpose, the constitutive framework of the neo-Hookean and the Fung-Demiray model is described, and subsequently the implementation process in the commercial finite element software ANSYS Mechanical APDL and LS-DYNA is detailed. Lastly, two elementary numerical examples are provided.

 

SIMCor (In-Silico testing and validation of Cardiovascular IMplantable devices) has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 101017578.
MOESM9 of Using hyperspectral analysis as a potential high throughput phenotyping tool in GWAS for protein content of rice quality
Creators: name: Sun, Dawei
name: Cen, Haiyan
name: Weng, Haiyong
name: Wan, Liang
name: Abdalla, Alwaseela
name: El-Manawy, Ahmed
name: Zhu, Yueming
name: Zhao, Nan
name: Fu, Haowei
name: Tang, Juan
name: Li, Xiaolong
name: Zheng, Hongkun
name: Shu, Qingyao
name: Liu, Fei
name: He, Yong
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Additional file 9: Fig.Â S4. Distribution of reflectance for signal-to-noise ratio.
Sabatia dodecandra Britton
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Gentianales
Gentianaceae
Sabatia
Sabatia dodecandra

description: Chlora dodecandra (Linnaeus) Linnaeus, Systema Naturae, ed. 12, 2: 267. 1767.
["Habitat in Virginia."] Sp. Pl. 1: 190 (1753). RCN: 2695.
 Basionym: Chironia dodecandra L. (1753).
 Lectotype (Wilbur in Rhodora 57: 86. 1955): Clayton 120 (BM-000038166).
 Current name:  Sabatia dodecandra  (L.) Britton & al. (Gentianaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part C), pp. 370-473 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 412, DOI: 10.5281/zenodo.291971
Complexity Factor for Charged Spherical System
Creators: name: Sharif, M.
name: Butt, Iqra Ijaz
Publisher: name: arXiv
Year: 2018
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: In this paper, we study the complexity factor for a charged anisotropic self-gravitating object. We formulate the Einstein-Maxwell field equations, Tolman-Opphenheimer-Volkoff equation, and the mass function. We form the structure scalars by the orthogonal splitting of the Riemann tensor and then find the complexity factor with the help of these scalars. Finally, we investigate some astrophysical objects for the vanishing of complexity condition. It is found that the presence of the electromagnetic field decreases the complexity of the system.
description: 16 pages, no figure, to appear in EPJC
Orientifolds, Branes, and Duality of 4D Gauge Theories
Creators: name: Evans, Nick
name: Johnson, Clifford V.
name: Shapere, Alfred D.
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Recently, a D-brane construction in type IIA string theory was shown to yield the electric/magnetic duality of four dimensional N=1 supersymmetric U(N_c) gauge theories with N_f flavours of quark. We present here an extension of that construction which yields the electric/magnetic duality for the SO(N_c) and USp(N_c) gauge theories with N_f quarks, by adding an orientifold plane which is consistent with the supersymmetry. Due to the intersection of the orientifold plane with the NS-NS fivebranes already present, new features arise which are crucial in determining the correct final structure of the dualities.
description: 24 pages, harvmac.tex (b), 6 figures, epsf.tex (Major improvements to figures; minor improvements to text.)
Anomalous Spreading of Power-Law Quantum Wave Packets
Creators: name: Lillo, Fabrizio
name: Mantegna, Rosario N.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We introduce power-law tail quantum wave packets. We show that they can be seen as eigenfunctions of a Hamiltonian with a physical potential. We prove that the free evolution of these packets presents an asymptotic decay of the maximum of the wave packets which is anomalous for an interval of the characterizing power-law exponent. We also prove that the number of finite moments of the wave packets is a conserved quantity during the evolution of the wave packet in the free space.
description: 5 pages, 3 figures, to appear in Phys. Rev. Lett
Unraveling the Mystery of Indian Summer Monsoon Prediction: Improved Estimate of Predictability Limit
Creators: name: Saha, Subodh Kumar
name: Hazra, Anupam
name: Pokhrel, Samir
name: Chaudhari, Hemantkumar S.
name: Sujith, K.
name: Rai, Archana
name: Rahaman, Hasibur
name: Goswami, B. N.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Atmospheric and Oceanic Physics (physics.ao-ph)
subject: FOS: Physical sciences

description: Large socio-economic impact of the Indian Summer Monsoon (ISM) extremes motivated numerous attempts at its long range prediction over the past century. However, a rather estimated low potential predictability limit (PPL) of seasonal prediction of the ISM, contributed significantly by 'internal' interannual variability was considered insurmountable. Here we show that the 'internal' variability contributed by the ISM sub-seasonal (synoptic + intra-seasonal) fluctuations, so far considered chaotic, is partly predictable as found to be tied to slowly varying forcing (e.g. El Nino and Southern Oscillation). This provides a scientific basis for predictability of the ISM rainfall beyond the conventional estimates of PPL. We establish a much higher actual limit of predictability (r~0.82) through an extensive re-forecast experiment (1920 years of simulation) by improving two major physics in a global coupled climate model, which raises a hope for a very reliable dynamical seasonal ISM forecasting in the near future.
SIMCor. Deliverable 9.1 - Constitutive vessel model (TUG, M27)
Creators: name: Rolf-Pissarczyk, Malte
name: Terzano, Michele
Publisher: name: Zenodo
Year: 2023

description: The deliverable reports all relevant information regarding the development of an enhanced constitutive model to describe the anisotropic material behaviour of the vessel wall, which will be used in combination with the virtual device models for preliminary analyses requiring a reduced computational effort. For this purpose, the constitutive framework of the Holzapfel-Gasser-Ogden model with non-symmetric fibre dispersion is described and subsequently the implementation process in the commercial finite element software ANSYS Mechanical APDL and LS-DYNA is detailed. Two elementary numerical examples are presented to demonstrate the characteristic material behaviour predicted by the model. Initially, the parameters for the Holzapfel-Gasser-Ogden model are derived from existing literature data and then refined using experimental findings from our laboratory. Furthermore, a Bayesian framework is applied in a representative case study to evaluate the uncertainty associated these material parameters.

SIMCor (In-Silico testing and validation of Cardiovascular IMplantable devices) has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 101017578.
Incidencias de los factores institucionales en las spinoff universitarias caso Bogotá
Creators: name: Murillo Imbus, Jefersson
name: Quiñonez-Mosquera, Alejandro
Publisher: name: Zenodo
Year: 2019
Subjects: University Spin-offs
Bogotá
Determinats

description: Las Instituciones de Educación Superior (IES) tienen la cualidad de actuar sobre el desarrollo en los distintos factores que fomentan el desarrollo del país, con el fin de tener futuras generaciones con una mejor preparación en las instituciones de la ciudad de Bogotá.
 Ello se une al objetivo de lograr una calidad en la educación superior, teniendo en cuenta además los distintos cuestionamientos que se le hacen al sector público y privado. Los factores institucionales universitarios que se tomaron en cuenta para las IES en la ciudad de Bogotá son las características institucionales, la transferencia de resultados de investigación (TRI), la docencia y por último la investigación con fecha a corte de 2017 en Colciencias, el Sistema Nacional de Información de la Educación Superior (SNIES)
Additional file 6: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line
Creators: name: Toka, Felix
name: Dunaway, Kiera
name: Smaltz, Felicia
name: Browska, Lidia Szulc-DÄ
name: Drnevich, Jenny
name: Mielcarska, Matylda
name: Bossowska-Nowicka, Magdalena
name: Schweizer, Matthias
Publisher: name: figshare
Year: 2019
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: (A) Top Network generated from the poly(I:C)vs CpG DNA comparison. Antimicrobial response, Inflammatory response, Cell-to-cell signalling and interaction, (B) Functional networks, (C) Upstream Regulators in poly(I:C) vs CpG DNA dataset. (D) Top Regulator Effect Network generated from the poly(I:C) vs CpG DNA. (DOCX 2230 kb)
Additional file 5: of Open-CSAM, a new tool for semi-automated analysis of myofiber cross-sectional area in regenerating adult skeletal muscle
Creators: name: Desgeorges, Thibaut
name: Liot, Sophie
name: Solene Lyon
name: Bouvière, Jessica
name: Kemmel, Alix
name: Trignol, Aurélie
name: Rousseau, David
name: Chapuis, Bruno
name: Gondin, Julien
name: Mounier, Rémi
name: Chazaud, Bénédicte
name: Juban, Gaëtan
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology

description: Figure S5. CSA was measured using Open-CSAM, MyoVision, MuscleJ, or SMASH softwares on whole TA muscle images obtained from uninjured (D0) or 8 days (D8) and 28 days (D28) post-CTX injury. A Pictures showing the myofibers (yellow shapes except for SMASH which is in gray) detected by Open-CSAM, MyoVision, SMASH, and MuscleJ. The white dotted lines show where the images were split for Open-CSAM and MyoVision analysis. B Red boxes represent zoom-in examples of specific areas obtained by MuscleJ. Red asterisks show examples of group of myofibers that are merged. White bar = 250 μm. (PDF 12792 kb)
$η\to π^0 γγ$ decay in the three-flavor Nambu-Jona-Lasinio model
Creators: name: Nemoto, Y.
name: Oka, M.
name: Takizawa, M.
Publisher: name: arXiv
Year: 1996
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We study the $η\to π^0 γγ$ decay via the quark-box diagram in the three-flavor Nambu--Jona-Lasinio model that includes the $U_A (1)$ breaking effect. We find that the $η$-meson mass, the $η\to γγ$ decay width and the $η\to π^0 γγ$ decay width are in good agreement with the experimental values when the $U_A (1)$ breaking is strong and the flavor $SU(3)$ singlet-octet mixing angle $θ$ is about zero. The photon energy and the photon invariant mass spectra in $η\to π^0 γγ$ are compared with those in the chiral perturbation theory.
description: 14 pages, LaTeX, 3 EPS figures, uses epsf.sty and feynman.tex
Additional file 7: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line
Creators: name: Toka, Felix
name: Dunaway, Kiera
name: Smaltz, Felicia
name: Browska, Lidia Szulc-DÄ
name: Drnevich, Jenny
name: Mielcarska, Matylda
name: Bossowska-Nowicka, Magdalena
name: Schweizer, Matthias
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: Tables. (A) Top 5 Canonical pathways generated by Ingenuity Pathway Analysis (IPA) of differentially expressed genes in Bomac cells stimulated with PAMPs poly(I:C) vs CpG dataset, (B) Top Networks generated in Bomac cell line treated from the comparison of poly(I:C) vs CpG DNA, (C) Top 5 Molecular and Cellular Functions identified in the differentially expressed genes from the poly(I:C) vs CpG DNA comparison, (D) Upstream Regulators identified in poly(I:C) vs CpG DNA comparison, (E) Top Regulator Effect Networks generated from poly(I:C) vs CpG DNA comparison. (DOCX 17 kb)
Blackstonia perfoliata Huds.
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Gentianales
Gentianaceae
Blackstonia
Blackstonia perfoliata

description: Chlora perfoliata (Linnaeus) Linnaeus, Systema Naturae, ed. 12, 2: 267. 1767.
["Habitat in Gallia, Anglia, Hispania."] Sp. Pl. 1: 232 (1753). RCN: 2693.
 Basionym: Gentiana perfoliata L. (1753).
Type not designated.
Original material: as basionym.
 Current name:  Blackstonia perfoliata  (L.) Huds. (Gentianaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part C), pp. 370-473 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 412, DOI: 10.5281/zenodo.291971