cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1 of Characterizing the oligogenic architecture of plant growth phenotypes informs genomic selection approaches in a common wheat population
Creators: name: DeWitt, Noah
name: Guedira, Mohammed
name: Lauer, Edwin
name: Murphy, J. Paul
name: Marshall, David
name: Mergoum, Mohamed
name: Johnson, Jerry
name: Holland, James B.
name: Brown-Guedira, Gina
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1 Word document containing QTL results for spike length in Figure S1, KASP marker nucleotide sequences in Tables S1, S2 and S3 comparing prediction accuracies of the base regression model and the modified epistatic model for each phenotype.
Laterally-doped heterostructures for III-N lasing devices
Creators: name: Komirenko, S. M.
name: Kim, K. W.
name: Kochelap, V. A.
name: Zavada, J. M.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: To achieve a high-density electron-hole plasma in group-III nitrides for efficient light emission, we propose a planar two-dimensional (2D) p-i-n structure that can be created in selectively-doped superlattices and quantum wells. The 2D p-i-n structure is formed in the quantum well layers due to efficient activation of donors and acceptors in the laterally doped barriers. We show that strongly non-equilibrium 2D electron-hole plasma with density above $10^{12} cm^{-2}$ can be realized in the i-region of the laterally biased p-i-n structure, enabling the formation of interband population inversion and stimulated emission from such a LAteral Current pumped Emitter (LACE). We suggest that implementation of the lateral p-i-n structures provides an efficient way of utilizing potential-profile-enhanced doping of superlattices and quantum wells for electric pumping of nitride-based lasers.
description: 10 pages, 1 table, 2 figures (3 actually submitted)
Additional file 15: of Pipeline for specific subtype amplification and drug resistance detection in hepatitis C virus
Creators: name: Soria, María
name: Gregori, Josep
name: Chen, Qian
name: García-Cehic, Damir
name: Llorens, Meritxell
name: de Ávila, Ana
name: Beach, Nathan
name: Domingo, Esteban
name: Rodríguez-Frías, Francisco
name: Buti, María
name: Esteban, Rafael
name: Esteban, Juan
name: Quer, Josep
name: Perales, Celia
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology
subject: Computational Biology

description: Figure S9. Ultra-deep sequencing of viral samples from an G1a HCV-infected patient subjected to sequential DAA treatments. First panel: Representation of the viral load [international units (IU)/ml] as a function of time (in weeks). A yellow background indicates period in which antiviral treatment was applied (LDV: ledipasvir; SOF: sofosbuvir; RBV: ribavirin; DCV: daclatasvir; SMV: simeprevir). Viral relapse ocurred after the first two treatments, and SVR (sustained virological response) was achieved after the third treatment. Viral RNAs from four sequential samples (termed 1 to 4, indicated with arrows) were used to amplify NS3- (PCR 1.1 in Fig. 2), NS5A- (PCR 2.1 in Fig. 2), and NS5B-coding regions (PCRs 3.1 and 3.2 in Fig. 2) using MiSeq platforms. Subsequent panels: For each coding region (NS3, NS5A, NS5B) variations in mutation frequencies (as percentage of individual mutations) are represented as mutational waves (mutations that increase or decrease in frequency, relative to the previous or subsequent sample analyzed), and in a heat map of frequencies (color boxed below the graphics). Substitutions written in red confer resistance to the DAAs included in the treatment combinations, or are described in the literature (European Association for the Study of the Liver. Electronic address, 2017; Sarrazin, [9]; Lontok et al., [14]). Asteriscs in the heat map of NS5A-coding region in samples at viral relapse 2 and 4 highlight RAS that confer resistance to ledipasvir and daclatasvir, respectively. Haplotypes and their percentages (proportion of reads that include the indicated substitutions) are depicted on the right of each panel. (PDF 1030 kb)
Pion Generalized Dipole Polarizabilities by Virtual Compton Scattering $πe \to πeγ$
Creators: name: Unkmeir, C.
name: Ocherashvili, A.
name: Fuchs, T.
name: Moinester, M. A.
name: Scherer, S.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: Nuclear Experiment (nucl-ex)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We present a calculation of the cross section and the event generator of the reaction $πe\to πe γ$. This reaction is sensitive to the pion generalized dipole polarizabilities, namely, the longitudinal electric $α_L(q^2)$, the transverse electric $α_T(q^2)$, and the magnetic $β(q^2)$ which, in the real-photon limit, reduce to the ordinary electric and magnetic polarizabilities $\barα$ and $\barβ$, respectively. The calculation of the cross section is done in the framework of chiral perturbation theory at ${\cal O}(p^4)$. A pion VCS event generator has been written which is ready for implementation in GEANT simulation codes or for independent use.
description: 33 pages, Revtex, 15 figures
Coupling of wavefront errors and pointing jitter in the LISA interferometer: misalignments of the interfering wavefronts
Creators: name: Sasso, C P
name: Mana, G
name: Mottini, S
Publisher: name: arXiv
Year: 2019
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: The Laser Interferometer Space Antenna is a foreseen space-based gravitational wave detector, which aims to detect 10^20 strains in the frequency range from 0.1 mHz to 1 Hz. It is a triangular constellation of three spacecraft, with equal sides of 2,5 x 10^9 m, where every spacecraft hosts a pair of telescopes that simultaneously transmit and receive laser beams measuring the constellation arms by heterodyning the received wavefronts with local references. Due to the spacecraft and constellation jitters, the interfering (received and local) wavefronts become misaligned. We investigate analytically the coupling between misalignments and aberrations of the interfering wavefronts and estimate the relevant contribution to the noise of the heterodyne signal.
HEROÍNAS E HERÓIS EM COLÔNIA LEOPOLDINA
Creators: name: JOSÉ SOUZA BARROS, BARROS
name: MARIA LUECY PASSOS DA SILVA SANTANA, SANTANA
name: MOISÉS BARRETO DO NASCIMENTO, NASCIMENTO
name: RISADALVO JOSÉ DA SILVA, SILVA
name: SÉRGIO ROBERTO AZEVEDO, AZEVEDO
name: SÍLVIO CÉSAR DA SILVA DE CARVALHO, CARVALHO
name: JOSÉ FRANCISCO DE MELO NETO, Melo Neto
Publisher: name: Zenodo
Year: 2025

description: Este livro exibe ao leitor um conjunto de memórias de pessoas escolhidas pelos autores(a) que atuaram na Região do Vale do Rio Jacuípe, em  Colônia Leopoldina, na divisa norte de Alagoas e sul de Pernambuco. Essas  pessoas selecionadas estão inseridas num ambiente de lutas históricas  que remetem a Zumbi dos Palmares (séc. XVII), passando pela Guerra dos  Cabanos (séc. XIX), até a atual ocupação das terras do bairro do Mandacaru  (séc. XX) e outros assentamentos da circunvizinhança, como os de Cavaco/PE, Macaco/PE e de Gruta D`água, em Colônia Leopoldina. É um livro que faz parte da Coleção Colônia Leopoldina, da Academia de Cultura (ACCL), sendo o sexto volume da Série – Educação, História e Filosofia.
Pseudo-solutions of word equations
Creators: name: Holub, Štěpán
Publisher: name: arXiv
Year: 2019
Subjects: subject: Formal Languages and Automata Theory (cs.FL)
subject: Combinatorics (math.CO)
subject: FOS: Computer and information sciences
subject: FOS: Mathematics

description: We present a framework which allows a uniform approach to the recently introduced concept of pseudo-repetitions on words in the morphic case. This framework is at the same time more general and simpler. We introduce the concept of a pseudo-solution and a pseudo-rank of an equation. In particular, this allows to prove that if a classical equation forces periodicity then it also forces pseudo-periodicity. Consequently, there is no need to investigate generalizations of important equations one by one.
description: small corrections
DASTURLASH TILLARINI TALABALAR O'Z-O'ZI SAMARALI TUSHUNISHINI KUCHAYTIRISH TALABLARI
Creators: name: Aymuratov, A.K.
name: Djoldasbaeva, A.
Publisher: name: Zenodo
Year: 2024

description: So'nggi yillarda butun dunyoda talab katta bo'lgan zamonaviy biznes va ish o'rinlari guvohi bo'ldik, bu esa Axborot tizimlari (AT) mutaxassisliklarining malakali dasturlash ko'nikmalariga ega bo'lishini talab qiladi.
Additional file 6: of Prediction of regulatory long intergenic non-coding RNAs acting in trans through base-pairing interactions
Creators: name: Deforges, Jules
name: Reis, Rodrigo
name: Jacquet, Philippe
name: Vuarambon, Dominique
name: Poirier, Yves
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Figure S6. Network view of the different types of correlations identified in this study. A, The nodes represent the lincRNAs whose expression was found positively or negatively correlated with at least 1 potential target gene or 1 neighboring gene. B, Detail of a portion of a network view highlighting the complexity of interactions between lincRNAs and their potential targets. C, Detail of a network view showing the multiple protein coding targets predicted for XLOC_000685 lincRNA. The 4 genes belonging to AtRLP family are encircled in blue. For A, B and C, the size of nodes indicate the maximal expression level of the gene from the 12 conditions analyzed and the color the type of gene, while the edges show the types of correlation as indicated in the left box on top in A. (PDF 5992 kb)
Additional file 1 of Longitudinal disease-associated gut microbiome differences in infants with food protein-induced allergic proctocolitis
Creators: name: Martin, Victoria M.
name: Virkud, Yamini V.
name: Dahan, Ehud
name: Seay, Hannah L.
name: Itzkovits, Dvir
name: Vlamakis, Hera
name: Xavier, Ramnik
name: Shreffler, Wayne G.
name: Yuan, Qian
name: Yassour, Moran
Publisher: name: figshare
Year: 2022
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 1: Supplemental Figure 1. Overall longitudinal microbiome composition. (A) Composition plot of the full first year of life showing the mean relative abundance of the top 15 taxa and their longitudinal taxonomic assemblage over the first year. (B) Longitudinal microbial richness (using the chao1 index) over the first year. The center line denotes the median, the boxes cover the 25th to 75th percentiles. (C) Relative abundance (arcsine transformed, AST) of key taxonomic differences mediated by important environmental factors: Bacteroides by delivery mode, Bifidobacterium by infant diet, and Lactobacillus by probiotic use. FDR-corrected q-values and coefficients are calculated from the multivariate analysis across all samples. Supplemental Figure 2. Community stability analysis calculated by Bray-Curtis beta diversity method for all consecutive sample pairs from the same subject. Each dot represents a sample pair, and is colored by the disease state of the first sample in the pair (p-values were calculated using a two sided t-test). Supplemental Figure 3. Sample subsets. (A) Flow diagram showing sample subsets used for analyses with their corresponding sample sizes and rationale. (B) A sample map showing longitudinal samples used for each subset analyzed, axes and colors as in Fig. 1. The horizontal light gray bars represent the time from diagnosis to resolution of symptoms. The ‘+’ sign represents samples that were not selected in any model. Supplemental Figure 4. Differential trajectory of Lactobacillus across disease states in infants with FPIAP compared to controls, stratified by probiotic use. Box plots of the relative abundance (AST) trajectories of Lactobacillus across disease states (from pre-symptomatic to symptomatic to resolved) compared to controls, stratified by (largely LGG-containing) probiotic use across all samples (p-values calculated using t-test).
Spin-boson model as a simulator of non-Markovian multiphoton Jaynes-Cummings models
Creators: name: Puebla, R.
name: Zicari, G.
name: Arrazola, I.
name: Solano, E.
name: Paternostro, M.
name: Casanova, J.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The paradigmatic spin-boson model considers a spin degree of freedom interacting with an environment typically constituted by a continuum of bosonic modes. This ubiquitous model is of relevance in a number of physical systems where, in general, one has neither control over the bosonic modes, nor the ability to tune distinct interaction mechanisms. Despite this apparent lack of control, we present a suitable transformation that approximately maps the spin-boson dynamics into that of a tunable multiphoton Jaynes-Cummings model undergoing dissipation. Interestingly, the latter model describes the coherent interaction between a spin and a single bosonic mode via the simultaneous exchange of n bosons per spin excitation. Resorting to the so-called reaction coordinate method, we identify a relevant collective bosonic mode in the environment which is then used to generate multiphoton interactions following the proposed theoretical framework. Moreover, we show that spin-boson models featuring structured environments can lead into non-Markovian multiphoton Jaynes-Cummings dynamics. We discuss the validity of the proposed method depending on the parameters and analyze its performance, which is supported by numerical simulations. In this manner, the spin-boson model serves as a good analog quantum simulator for the inspection and realization of multiphoton Jaynes-Cummings models as well as the interplay of non-Markovian effects, and thus, as a simulator of light-matter systems with tunable interaction mechanisms.
description: 12 pages, 4 figures; comments welcome!
Spontaneous magnetization of aluminum nanowires deposited on the NaCl(100) surface
Creators: name: Ayuela, A.
name: Räbiger, H.
name: Puska, M. J.
name: Nieminen, R. M.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We investigate electronic structures of Al quantum wires, both unsupported and supported on the (100) NaCl surface, using the density-functional theory. We confirm that unsupported nanowires, constrained to be linear, show magnetization when elongated beyond the equilibrium length. Allowing ions to relax, the wires deform to zig-zag structures with lower magnetization but no dimerization occurs. When an Al wire is deposited on the NaCl surface, a zig-zag geometry emerges again. The magnetization changes moderately from that for the corresponding unsupported wire. We analyse the findings using electron band structures and simple model wires.
description: submitted to PHys. Rev. B
Additional file 10 of Comparative neurotranscriptomics reveal widespread species differences associated with bonding
Creators: name: Tripp, Joel A.
name: Berrio, Alejandro
name: McGraw, Lisa A.
name: Matz, Mikhail V.
name: Davis, Jamie K.
name: Inoue, Kiyoshi
name: Thomas, James W.
name: Young, Larry J.
name: Phelps, Steven M.
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 10: Supplementary Fig. 1. Expression pattern of significant genes is consistent across regions. Plots show counts for samples collected at each pre-mating (0 h) and post-mating (0.5, 2, or 12 h) collection point. Each point represents one sample. Darker shades and triangles represent prairie vole samples. Lighter shades and circles represent meadow vole samples. a. Nfkbia in AMY (above) and VP/NAc (below). b. Pxn in HT (above) and VP/NAc (below). c. Per1 in HT (above) and VP/NAc (below). d. Cables1 in HT (above) and VP/NAc (below). Supplementary Fig. 2. Gene ontology analysis for amygdala gene-expression modules. Enriched GO terms in a. prairie vole green module and b. meadow vole darkorchid module. Hierarchical clustering tree shows relationship between GO categories based on shared genes. Branches with length of zero are subsets of one another. Fractions preceding GO terms indicate proportion of genes from the category that are included in the module of interest. FDR determined by 100 permutations where significance measures are randomly shuffled among genes. Bold text indicates adjusted p
Additional file 5 of Circular RNA circCCDC9 acts as a miR-6792-3p sponge to suppress the progression of gastric cancer through regulating CAV1 expression
Creators: name: Luo, Zai
name: Rong, Zeyin
name: Zhang, Jianming
name: Zhu, Zhonglin
name: Yu, Zhilong
name: Li, Tengfei
name: Fu, Zhongmao
name: Qiu, Zhengjun
name: Huang, Chen
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 5: Table S4 Correlation between miR-6792-3p expression and clinicopathological features in 54 GC tissues from TMA.
Theoretical and Experimental Status of the Indirect Higgs Boson Mass Determination in the Standard Model
Creators: name: Baur, U.
name: Clare, R.
name: Erler, J.
name: Heinemeyer, S.
name: Wackeroth, D.
name: Weiglein, G.
name: Wood, D. R.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The impact of theoretical and experimental uncertainties on the indirect determination of the Higgs boson mass, MH, in the Standard Model (SM) is discussed. Special emphasis is put on the electroweak precision observables MW (the W boson mass) and sin^2(theta_eff) (the effective leptonic mixing angle). The current uncertainties of the theoretical predictions for MW and sin^2(theta_eff) due to missing higher order corrections are conservatively estimated to delta MW \approx 7 MeV and delta sin^2(theta_eff) \approx 7 x 10^-5 . Expectations and necessary theoretical improvements for future colliders are explored. Results for the indirect MH determination are presented based on the present experimental and theoretical precisions as well as on improvements corresponding to the prospective situation at future colliders. The treatment of the different future colliders is done in a uniform way in order to allow for a direct comparison of the accuracies that can be reached. Taking all experimental, theoretical, and parametric uncertainties into account, a current upper bound on MH of \sim 200 GeV is obtained. Furthermore we find in a conservative approach that a Linear Collider with GigaZ capabilities can achieve a relative precision of about 8% (or better) in the indirect determination of MH.
description: 11 pages, 1 figure, contribution to the P1-WG1 report, "Workshop on the Future of Particle Physics", Snowmass, Colorado, USA, July 2001
Spinoliella ruzi Compagnucci
Creators: name: Gonzalez, Victor H.
name: Smith-Pardo, Allan H.
name: Engel, Michael S.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Andrenidae
Spinoliella
Spinoliella ruzi

description: Spinoliella ruzi Compagnucci   Figure 20F
 Spinoliella ruzi Compagnucci, 2015: 83 (holotype ♀, MACN: Mendoza, Argentina).
 DIAGNOSIS: This Argentinean species is quite similar morphologically to S. rufiventris from Chile. It can be separated by the narrower pygidial plate of the female and the slender median process of S8 of the male (fig. 20F).
 MATERIAL EXAMINED (n = 1♀, 3♂♂): Argentina: 1♀, 3♂♂, nr. Nahuel Huapi [Neuquén], -41.02984, -71.312778, 927 m, 24.i.2007 [24 January 2007], vane trp, L. Packer (1♀, 2♂♂ PCYU, 1♂ SEMC).
DISTRIBUTION: Argentina: Mendoza, Neuquén.
COMMENTS: This species was described from Laguna Diamante, San Carlos, Mendoza, a locality in west-central Argentina about 20 km from the border with Chile. The specimens examined in the present work were collected near Nahuel Huapi Lake in southern Neuquén, Argentina, about 700 km south of the type locality.
description: Published as part of Gonzalez, Victor H., Smith-Pardo, Allan H. & Engel, Michael S., 2017, Phylogenetic Relationships Of A New Genus Of Calliopsine Bees From Peru, With A Review Of Spinoliella Ashmead (Hymenoptera: Andrenidae), pp. 1-72 in Bulletin of the American Museum of Natural History 2017 (412) on page 65, DOI: 10.1206/0003-0090-412.1.1, http://zenodo.org/record/5407146
Violation of the Equivalence Principle in the light of the SNO and SK solar neutrino results
Creators: name: Raychaudhuri, Amitava
name: Sil, Arunansu
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Astrophysics (astro-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: The SNO result on charged current deuteron disintegration, the SuperKamiokande 1258-day data on electron scattering, and other solar neutrino results are used to revisit the model of neutrino oscillations driven by a violation of the equivalence principle. We use a chisq minimization technique to examine oscillation between the nu(e) and another active neutrino, both massless, and find that within the Standard Solar Model the fit to the SNO and SuperKamiokande spectra are moderately good while a very good fit is obtained when the absolute normalizations of the 8B and hep neutrino fluxes are allowed to vary. The best fit prefers large, but not maximal, mixing, essentially no hep neutrinos, and a 40% reduction in the 8B neutrino flux. The fit to the total rates from the different experiments is not encouraging but when the rates and spectra are considerd together the situation is much improved. We remark on the expectations of the VEP model for the neutral current measurements at SNO.
description: Latex, 11 pages (incl. 1 postscript figure)
De la educación ambiental al desarrollo sostenible: desafíos y tensiones en los tiempos del cambio climático
Creators: name: Canaza-Choque, Franklin Américo
Publisher: name: figshare
Year: 2021
Subjects: subject: Education
subject: Environmental Humanities
subject: 180111 Environmental and Natural Resources Law
subject: FOS: Law

description: El Cambio Climático (cc) se ha convertido, en cierta forma, en la alarma y emergencia de proporciones multidimensionales que atañe a agencias globales, gobiernos, empresas y sociedades enteras con el propósito único de atemperar sus efectos devastadores y de un desenfrenado mundo-consumo en términos insostenibles. Bajo esas circunstancias, el estudio pretende reanalizar la importancia de la Educación Ambiental (ea) y del Desarrollo Sostenible (ds) en tiempos de desajustes climáticos y de emergencia planetaria. Por ello, acentuar y cristalizar estas alternancias en los sistemas educativos supone, desde un primer momento, denotar una ea que construya una conciencia ecológica en ciudadanas y ciudadanos de las distintas coordenadas del planeta. Como también, un ds que acoja los diferenciados problemas y vectores remarcados en la Agenda 2030, que simultáneamente, reconfiguren los estereotipos de consumo y de desarrollo económico en la búsqueda del balance entre la naturaleza y la especie humana, en especial, de volver a reconectar a este último, con el primero.
Modeling two-state cooperativity in protein folding
Creators: name: Fan, K.
name: Wang, J.
name: Wang, W.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Quantitative Biology (q-bio)
subject: FOS: Physical sciences
subject: FOS: Biological sciences

description: A protein model with the pairwise interaction energies varying as local environment changes, i.e., including some kinds of collective effect between the contacts, is proposed. Lattice Monte Carlo simulations on the thermodynamical characteristics and free energy profile show a well-defined two-state behavior and cooperativity of folding for such a model. As a comparison, related simulations for the usual Gō model, where the interaction energies are independent of the local conformations, are also made. Our results indicate that the evolution of interactions during the folding process plays an important role in the two-state cooperativity in protein folding.
description: 5 figures
From independent particle towards collective motion in two electron square lattices
Creators: name: Martinez, Moises
name: Pichard, Jean-Louis
Publisher: name: arXiv
Year: 2002
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The two dimensional crossover from independent particle towards collective motion is studied using 2 spinless fermions interacting via a U/r Coulomb repulsion in a LxL square lattice with periodic boundary conditions and nearest neighbor hopping t. Three regimes characterize the ground state when U/t increases. Firstly, when the fluctuation $Δr$ of the spacing r between the two particles is larger than the lattice spacing, there is a scaling length $Lo=\sqrt{8}π^2(t/U)$ such that the relative fluctuation $Δr/$ is a universal function of the dimensionless ratio L/Lo, up to finite size corrections of order $L^{-2}$. LLo are respectively the limits of the free particle Fermi motion and of the correlated motion of a Wigner molecule. Secondly, when U/t exceeds a threshold U*(L)/t, $Δr$ becomes smalller than the lattice spacing, giving rise to a correlated lattice regime where the previous scaling breaks down and analytical expansions in powers of (t/U) become valid. A weak random potential reduces the scaling length and favors the correlated motion.
description: 8 pages, 11 figures, to be published in EPJ
On the road to percent accuracy II: calibration of the non-linear matter power spectrum for arbitrary cosmologies
Creators: name: Giblin, Benjamin
name: Cataneo, Matteo
name: Moews, Ben
name: Heymans, Catherine
Publisher: name: arXiv
Year: 2019
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We introduce an emulator approach to predict the non-linear matter power spectrum for broad classes of beyond-$Λ$CDM cosmologies, using only a suite of $Λ$CDM $N$-body simulations. By including a range of suitably modified initial conditions in the simulations, and rescaling the resulting emulator predictions with analytical `halo model reactions', accurate non-linear matter power spectra for general extensions to the standard $Λ$CDM model can be calculated. We optimise the emulator design by substituting the simulation suite with non-linear predictions from the standard {\sc halofit} tool. We review the performance of the emulator for artificially generated departures from the standard cosmology as well as for theoretically motivated models, such as $f (R)$ gravity and massive neutrinos. For the majority of cosmologies we have tested, the emulator can reproduce the matter power spectrum with errors $\lesssim 1\%$ deep into the highly non-linear regime. This work demonstrates that with a well-designed suite of $Λ$CDM simulations, extensions to the standard cosmological model can be tested in the non-linear regime without any reliance on expensive beyond-$Λ$CDM simulations.
description: 16 pages, 13 figures, accepted for publication in MNRAS
Additional file 5 of Prediction of regulatory long intergenic non-coding RNAs acting in trans through base-pairing interactions
Creators: name: Deforges, Jules
name: Reis, Rodrigo
name: Jacquet, Philippe
name: Vuarambon, Dominique
name: Poirier, Yves
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Figure S5. Summary of the number of lincRNAs showing a correlation with a putative target or a neighboring gene. Venn diagram showing number of lincRNAs predicted to base-pair with target mRNA for which changes in lincRNA steady-state level was correlated or anti-correlated with changes in steady-state level (SS) (blue) or polysome association (PA) of target mRNAÂ (red). LincRNAs predicted to interact with the chromatin of putative target genes level and showing a positive or negative correlation of their RNA steady-state levels are indicated by the pink area. LincRNAs coexpressed or anti-coexpressed with a neighboring gene are represented by the green area. The numbers of unique pairs lincRNA / target or neighbor genes are indicated on the Venn diagram. (PDF 5992 kb)
Additional file 1 of The revised-risk analysis index as a predictor of major morbidity and mortality in older patients after abdominal surgery: a retrospective cohort study
Creators: name: Wei, Bin
name: Zong, Yanan
name: Xu, Mao
name: Wang, Xiaoxiao
name: Guo, Xiangyang
Publisher: name: figshare
Year: 2022
Subjects: Medicine
Cell Biology
Environmental Sciences not elsewhere classified
Mental Health

description: Additional file 1: Supplemental Digital Content 1. Revised-Risk Analysis Index Scoring system.
Ambohima pauliani GRISWOLD 1990
Creators: name: Griswold, Charles E.
name: Wood, Hannah Marie
name: Carmichael, Anthea D.
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Phyxelididae
Ambohima
Ambohima pauliani

description: AMBOHIMA PAULIANI GRISWOLD 1990
(FIGS 7H, 36C, 37C, 57)
 Ambohima pauliani Griswold 1990: 130; Platnick 2011.
 Type: Holotype female from Maroantsetra, Tamatave District, Madagascar, collected in September by R. Paulian, deposited in AMNH, examined.
 Diagnosis: Female vulva as in Figure 37C, spermathecal base with transverse, bilobed chamber, anteriorly with three widely separated spermathecal coils.
 Female (Holotype): Total length 9.69. Markings of dorsum as in Figure 7H. Carapace 4.18 long, 3.16 wide; thoracic fovea broad, deep, length 0.11 carapace; clypeus 0.32 high; ocular area 0.43 long, 1.28 wide; ratio of eyes AM /AL/ PM / PL, 1.00:1.20:1.00:1.20, diameter of PM 0.16. Chelicerae 1.84 long, with weak ventrolateral wrinkles, promargin of fang furrow with six, retromargin with five large teeth and one minute tooth. Sternum 2.19 long, 1.63 wide, labium 0.84 long, 0.72 wide; palpal coxa 1.39 long, 0.66 wide. Legs elongate, femur I length 0.85 times carapace length. Palpal femur with row of four anterobasal thorns becoming shorter distally, distal two stoutest. Leg measurements (femur + patella + tibia + metatarsus + tarsus = [total]): I: 3.59 + 0.84 + 3.38 + 3.19 + 1.31 = [12.31]; II: 2.81 + 0.75 + 2.34 + 2.28 + 1.03 = [9.21]; III: 2.38 + 0.66 + 1.78 + 1.88 + 0.88 = [7.58]; IV: 3.09 + 0.72 + 2.47 + 2.56 + 1.00 = [9.84]; palp: 0.97 + 0.38 + 0.50 + (absent) + 1.09 = [3.24]. Epigynum as in Figure 36C, vulva as in Figure 37C, spermathecal base with transverse, bilobed chamber, three anterior spermathecal coils widely separated.
 Male: Unknown.
 Distribution: Known only from the type locality at the northern end of Antongil Bay on the north-east coast of Madagascar (Fig. 57).
 Material examined: MADAGASCAR: Antsiranana Prov. Maroantsetra, September, R. Paulian, holotype ♀, AMNH.
description: Published as part of Griswold, Charles E., Wood, Hannah Marie & Carmichael, Anthea D., 2012, The lace web spiders (Araneae, Phyxelididae) of Madagascar: phylogeny, biogeography and taxonomy, pp. 728-810 in Zoological Journal of the Linnean Society 164 (4) on page 780, DOI: 10.1111/j.1096-3642.2011.00779.x, http://zenodo.org/record/5407022
The onset of classical QCD dynamics in relativistic heavy ion collisions
Creators: name: Kharzeev, D.
name: Levin, E.
name: Nardi, M.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The experimental results on hadron production obtained recently at RHIC offer a new prospective on the energy dependence of the nuclear collision dynamics. In particular, it is possible that parton saturation -- the phenomenon likely providing initial conditions for the multi--particle production at RHIC energies -- may have started to set in central heavy ion collisions already around the highest SPS energy. We examine this scenario, and make predictions based on high density QCD for the forthcoming 22 GeV run at RHIC.
description: 4 pages, 2 figures, revtex
Additional file 6 of The revised-risk analysis index as a predictor of major morbidity and mortality in older patients after abdominal surgery: a retrospective cohort study
Creators: name: Wei, Bin
name: Zong, Yanan
name: Xu, Mao
name: Wang, Xiaoxiao
name: Guo, Xiangyang
Publisher: name: figshare
Year: 2022
Subjects: Medicine
Cell Biology
Environmental Sciences not elsewhere classified
Mental Health

description: Additional file 6: Supplemental Digital Content 6. Factors in association with postoperative life-threatening complications and mortality (univariate analyses).
Are four neutrino models ruled out?
Creators: name: Foot, R.
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We show explicitly that four neutrino models of the 2+2 variety still provide an acceptable global fit to the solar, atmospheric and LSND neutrino data. The goodness of fit, defined in the usual way, is found to be 0.26 for the simplest such model. That is, we find that there is a 26% probability of obtaining a worse global fit to the neutrino data We also make some specific comments on the paper, ``Ruling out four-neutrino oscillation interpretations of the LSND anomaly'' [hep-ph/0207157], and explain why they reached drastically different conclusions.
description: about 4 pages
Additional file 2 of Disruption of orbitofrontal-hypothalamic projections in a murine ALS model and in human patients
Creators: name: Bayer, David
name: Antonucci, Stefano
name: Müller, Hans-Peter
name: Saad, Rami
name: Dupuis, Luc
name: Rasche, Volker
name: Böckers, Tobias M.
name: Ludolph, Albert C.
name: Kassubek, Jan
name: Roselli, Francesco
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Ecology
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Additional file 2: Supplemental file 2. Fig. S1. Altered cortico-hypothalamic projection pattern in mSOD1 mice at P95, absolute ipsilateral counts. Fig. S2. Altered cortico-hypothalamic projection pattern in mSOD1 mice at P95, contralateral hemisphere. Fig. S3. 50k normalized contralateral projection in P95 mSOD1 animals and MOp/SS atrophy in P95 mSOD mice. Fig. S4. Altered cortico-hypothalamic projection pattern in manually registered mSOD1 mice at P95, ipsilateral. Fig. S5. Altered projection pattern in manually annotated mSOD1 mice at P95, contralateral. Fig. S6. Unaltered cortico-hypothalamic projection pattern in mSOD1 mice at P25, contralateral hemisphere. Fig. S7. Altered cortico-hypothalamic projection pattern in kiFUS mice at P255, absolute counts ipsilateral. Fig. S8. Altered cortico-hypothalamic projection pattern in kiFUS mice at P255, contralateral hemisphere.
Thermodynamics and weak cosmic censorship conjecture in the charged RN-AdS black hole surrounded by quintessence under the scalar field
Creators: name: Hong, Wei
name: Mu, Benrong
name: Tao, Jun
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: In this paper, we study the thermodynamics and the weak cosmic censorship conjecture of the RN-AdS black hole surrounded by the quintessence under the scattering of a charged complex scalar field. With scalar field scattering, the variation of the black hole is calculated in the extended and normal phase spaces. In the extended phase space, the cosmological constant and the normalization parameter are considered as thermodynamic variables, and the first law of thermodynamics is valid, but the second law of thermodynamics is not valid. In the normal phase space, the cosmological constant and the normalization parameter are fixed, and the first and second laws of thermodynamics can also be satisfied. Furthermore, the weak cosmic censorship conjecture is both valid in the extended and normal phase spaces.
Theoretical status of the lifetime predictions: $(ΔΓ/ Γ)_{B_s}, τ_{B^+}/τ_{B_d}$ and $τ_{Λ_b}/τ_{B_d}$
Creators: name: Lenz, Alexander
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: We give a review of the theoretical status of the lifetime predictions in the standard model. In case of $(ΔΓ/ Γ)_{B_s}$ we are already in a rather advanced stage. We obtain $(ΔΓ/Γ)_{B_s}=(9.3^{+3.4}_{-4.6})%$. It seems to be difficult to improve these errors substantially. In addition now some experimental results are available. For $τ_{B^+}/τ_{B_d}$ and $τ_{Λ_b} / τ_{B_d}$ the theoretical status is much less advanced and the discrepancy between experiment and theory still remains. We conclude with a what-to-do-list for theorists.
description: Invited talk given at the International Conference on Flavor Physics in Zhang-Jia-Jie City, Hunan, China, May 31 - June 6,2001. 6 pages
Orchestina sotoi Izquierdo 2017, new species
Creators: name: Izquierdo, Matías Andrés
name: Ramírez, Martín J.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Oonopidae
Orchestina
Orchestina sotoi

description: Orchestina sotoi Izquierdo, new species   Figures 76, 93D–F, 100F, G, map 12
TYPE: Male holotype from Ecuador: Orellana, 1km S Onkone Gare Camp; Reserva Etnica Waorani, 216 m, -0.65715°, -76.45300°, June 26, 1996, T. Erwin et al., deposited in USNM, PBI_ OON 30080; Brazil: Amazonas, Reserva Adolpho Ducke, -2.92638°, -59.94027°, Sep. 01, 1995, J.C.H. Guerrero, 1 male paratype deposited in MPEG 18917, PBI_OON 42156; Brazil: Pará: Melgaço, Estacão Científica Ferreira Penna, FLONA Caxiuanã, -1.73833°, -51.46333°, 1 male paratype deposited in MPEG 18919, PBI_OON 42145.
ETYMOLOGY: The specific name is a patronym in honor of Eduardo Soto for his friendship during our work in MACN.
DIAGNOSIS: Males can be distinguished by the triangular embolus (in dorsal view) and the presence of a curved apophysis near base of embolus (figs. 93D–F, 100F, G).
MALE (PBI_OON 42167): Total length 1.03. Habitus as in figure 76. CEPHALOTHORAX: Carapace as in figure 76A–C. Anterior face of chelicerae with basal blunt projections. Labium rectangular. ABDOMEN: Pale white. LEGS: Yellow; patella plus tibia I longer than carapace.
GENITALIA: Besides diagnostic characters, sperm duct coiled, with several loops (fig. 100F).
FEMALE: Unknown; females of morphospecies MI020–MI027, MI029, MI036, and MI038 from the same area are candidates to match this male.
DISTRIBUTION: Ecuador (Provincia de Orellana), Brazil (states of Amazonas, and Pará) (map 12).
 OTHER MATERIAL EXAMINED: same data as holotype, Oct. 07, 1995, T. Erwin et al., 13 (USNM, PBI _ OON 30057). BRAZIL: Amazonas: Manaus, Igapó, Tarumã-Mirim (-3.03306°, -60.15750°), Jul. 27, 1979, J. Adis et al., 13 (IBSP 17326, PBI _OON 30293); Reserva Adolpho Ducke, -2.92638°, -59.94027°, Oct. 11, 1995, J.C.H. Guerrero, 13 (MPEG 19007, PBI _OON 42144); same data, Jun. 27, 1995, Camilo, 13 (MPEG 18852, PBI _OON 42155); same data, Sep. 15, 1995, J.C.H. Guerrero, 13 (MPEG 19002, PBI _OON 42157). Para: Flona Caxiuanã, -1.79222°, -51.43306°, Nov. 18, 2005, N. Abrahim, 13 (MPEG 18823, PBI _OON 42167).
description: Published as part of Izquierdo, Matías Andrés & Ramírez, Martín J., 2017, Taxonomic Revision Of The Jumping Goblin Spiders Of The Genus Orchestina Simon, 1882, In The Americas (Araneae: Oonopidae), pp. 1 in Bulletin of the American Museum of Natural History 2017 (410) on page 1, DOI: 10.1206/0003-0090-410.1.1, http://zenodo.org/record/5405613
Additional file 4: of Prediction of regulatory long intergenic non-coding RNAs acting in trans through base-pairing interactions
Creators: name: Deforges, Jules
name: Reis, Rodrigo
name: Jacquet, Philippe
name: Vuarambon, Dominique
name: Poirier, Yves
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Computational Biology

description: Figure S4. Visual representation of sequence complementarity between segments of trans-NATs with their targets in mRNAs. Complementarity between segments of trans-NATs XLOC_001125, XLOC_003241 and AT4G16355 with their target on mRNA AT1G63350, AT4G01770 and AT2G22260, respectively, was visualized using the VARNA application ( http://varna.lri.fr/ ). (PDF 5992 kb)
Additional file 1 of Disruption of orbitofrontal-hypothalamic projections in a murine ALS model and in human patients
Creators: name: Bayer, David
name: Antonucci, Stefano
name: Müller, Hans-Peter
name: Saad, Rami
name: Dupuis, Luc
name: Rasche, Volker
name: Böckers, Tobias M.
name: Ludolph, Albert C.
name: Kassubek, Jan
name: Roselli, Francesco
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Ecology
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Additional file 1: Supplemental file 1. Table S1. Anatomical landmarks used to map brain sections along the anterior-posterior axis. Table S2. List of brain structures projecting to LHA.
Orchestina magna Izquierdo 2017, new species
Creators: name: Izquierdo, Matías Andrés
name: Ramírez, Martín J.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Oonopidae
Orchestina
Orchestina magna

description: Orchestina magna Izquierdo, new species   Figures 77, 94A–C, 100H, I, map 10
TYPE: Male holotype from Ecuador: Orellana, Tiputini Biodiversity Station, near Yasuní National Park, 250 m, -0.63194°, -76.14416°, Oct. 24, 1998, T. Erwin et al., deposited in USNM, PBI_OON 37646.
ETYMOLOGY: The specific name refers to the strong development of the chelicerae.
 DIAGNOSIS: Males are similar to those of O. ecuatoriensis by the shape of embolus and the spine-shaped apophysis, but in O. magna both structures are longer. Also, this species is easily distinguished by the presence of a laminar projection on the mesal margin of the chelicerae.
MALE (PBI_OON 37646): Total length 1.14. Habitus as in figure 77A, D. CEPHALOTHO- RAX: Carapace with brown stripe along margin of cephalic area (fig. 77E). Clypeus curved slightly downward in front view, vertical in lateral view (fig. 77E). Eyes as in figure 77B. Sternum as long as wide (fig. 77F). Anterior face of chelicerae with basal blunt projections, mesal margin with prominent lamina. Labium rectangular. ABDOMEN: Pale white. LEGS: Yellow; patella plus tibia I longer than carapace. GENITALIA: Palp proximal segments yellow; cymbium yellow; bulb yellow, tapering apically, with strong, spine-shaped apophysis near base of embolus; embolus with notch near base; sperm duct coiled with several loops (figs. 94A–C, 100H, I).
FEMALE: Unknown; females of morphospecies MI020, MI022–MI023, MI025–MI027, MI029, MI036, and MI038 from the same area are candidates to match this male.
DISTRIBUTION: Known only from the type locality in Ecuador (Orellana, map 10).
OTHER MATERIAL EXAMINED: Same data as holotype, Oct. 22, 1998, T. Erwin et al., 13 (USNM, PBI_ OON 37645).
description: Published as part of Izquierdo, Matías Andrés & Ramírez, Martín J., 2017, Taxonomic Revision Of The Jumping Goblin Spiders Of The Genus Orchestina Simon, 1882, In The Americas (Araneae: Oonopidae), pp. 1 in Bulletin of the American Museum of Natural History 2017 (410) on page 1, DOI: 10.1206/0003-0090-410.1.1, http://zenodo.org/record/5405613
Supercurrent in ferromagnetic Josephson junctions with heavy metal interlayers. II. Canted magnetization
Creators: name: Satchell, Nathan
name: Loloee, Reza
name: Birge, Norman O.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: It has been suggested by theoretical works that equal spin-triplet Cooper pairs can be generated in Josephson junctions containing both a ferromagnet and a source of spin-orbit coupling. Our recent experimental work suggested that spin-triplet Cooper pairs were not generated by a Pt spin-orbit coupling layer when the ferromagnetic weak link had entirely in-plane anisotropy (N. Satchell and N.O. Birge, Phys. Rev. B 97, 214509 (2018)). Here, we revisit the experiment using Pt again as a source for spin-orbit coupling and a [Co(0.4 nm)/Ni(0.4 nm)]$_{\times8}$/Co(0.4 nm) ferromagnetic weak link with both in-plane and out-of-plane magnetization components (canted magnetization). The canted magnetization more closely matches theoretical predictions than our previous experimental work. Our results suggest that there is no supercurrent contribution in our junctions from equal spin-triplets. In addition, this work includes the first systematic study of supercurrent dependence on Cu interlayer thickness, a common additional layer used to buffer the growth of the ferromagnet and which for Co may significantly improve the growth morphology. We report that the supercurrent in the [Co(0.4 nm)/Ni(0.4 nm)]$_{\times8}$/Co(0.4 nm) ferromagnetic weak links can be enhanced by over two orders of magnitude by tuning the Cu interlayer thickness. This result has important application in superconducting spintronics, where large critical currents are desirable for devices.
description: 6 pages, 3 figures main body + 3 pages, 3 figures of supplementary material