cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Conjugation in hydrogen-bonded systems
Creators: name: Novakovskaya, Yulia V.
Publisher: name: arXiv
Year: 2012
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: Atomic and Molecular Clusters (physics.atm-clus)
subject: FOS: Physical sciences

description: Analysis of the electron density distribution in clusters composed of hydrogen fluoride, water, and ammonia molecules, especially within the hydrogen-bond domains, reveals the existence of both σ- and π-binding between molecules. The σ-kind density distribution determines the mutual orientation of molecules. A π-system may be delocalized conjugated, which provides additional stabilization of molecular clusters. In those clusters where the sequence of hydrogen bonds is not planar, a peculiar kind of π-conjugation exists. HF anion and H5O2 cation are characterized by quasi-triple bonds between the electronegative atoms. The most long-lived species stabilized by delocalized π-binding are rings and open or closed hoops composed of fused rings. It is conjugated π-system that determines cooperativity phenomenon.
description: 27 pages, 12 figures
High-purity single photons obtained with moderate-NA optics from SiV center in nanodiamonds on a bullseye antenna
Creators: name: Waltrich, Richard
name: Lubotzky, Boaz
name: Abudayyeh, Hamza
name: Steiger, Elena S.
name: Fehler, Konstantin G.
name: Lettner, Niklas
name: Davydov, Valery A.
name: Agafonov, Viatcheslav N.
name: Ronen, Rapaport
name: Kubanek, Alexander
Publisher: name: Universität Ulm
Year: 2021
Subjects: subject: Silicon vacancy center
subject: Color center in diamond
subject: Hybrid quantum systems
subject: Bullseye antenna
subject: DDC 530 / Physics
subject: Nanodiamonds
subject: Color centers
subject: Quantum optics
subject: Quantenoptik

description: Coherent exchange of single photons is at the heart of applied quantum optics. The negatively-charged silicon vacancy center in diamond is among most promising sources for coherent single photons. Its large Debye–Waller factor, short lifetime and extraordinary spectral stability is unique in the field of solid-state single photon sources. However, the excitation and detection of individual centers requires high numerical aperture (NA) optics which, combined with the need for cryogenic temperatures, puts technical overhead on experimental realizations. Here, we investigate a hybrid quantum photonics platform based on silicon-vacancy center in nanodiamonds and metallic bullseye antenna to realize a coherent single-photon resource that operates efficiently down to low NA optics with an inherent resistance to misalignment.
Copium teucrii subsp. teucrii teucrii (Host 1788
Creators: name: Dursun, Ahmet
name: Fent, Meral
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Tingidae
Copium
Copium teucrii
Copium teucrii teucrii (host, 1788)

description: Copium teucrii teucrii (Host, 1788)
Material examined: ASIAN TURKEY: Amasya province: Centru m, Harşena Castle, 14.05.2006, 560 m, 1♀; Sivas province: Suşehri, Akçaağıl, 28.06.2005, 728 m, 1♀; Tokat province: Erbaa, Karanlıkdere, 385 m, 27.08.2005, 1♂.
Asian Turkey: Horváth (1883), Puton & Noualhier (1895), Kiritshenko (1918), Hoberlandt (1956), Lodos & Önder (1983), Péricart (1983), Péricart & Golub (1996), Önder et al. (2006), Maral et al. (2013), Matocq et al. (2014), Kıyak (2016), this study.
European Turkey: Seidenstücker (1958, as Copium horvathi), Lodos & Önder (1983), Péricart (1983), Péricart & Golub (1996).
Comments: This Holomediterranean species has been found for the first time in Black Sea region within the present study. It has been reported from Edirne by Seidenstücker (1958) as Copium horvathi.
description: Published as part of Dursun, Ahmet & Fent, Meral, 2017, Annotated Checklist of Tingidae (Hemiptera: Heteroptera) in Turkey with new records for the faunas of Europe and Turkish Thrace, pp. 465-491 in Zootaxa 4347 (3) on page 472, DOI: 10.11646/zootaxa.4347.3.3, http://zenodo.org/record/1048601
Corythucha arcuata
Creators: name: Dursun, Ahmet
name: Fent, Meral
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Tingidae
Corythucha
Corythucha arcuata

description: Corythucha arcuata (Say, 1832)
Material examined: ASIAN TURKEY: Amasya province: Borabay, 05.03.2015, 450 m, 1♂; 30.6.2016, 450 m, 6♀♀, 8♂♂; Merzifon, Çavundur, 463 m, 06.09.2016, 1♂.
Asian Turkey: Mutun (2003), Mutun et al. (2009), Aukema et al. (2013), Küçükbasmacı (2014), Sönmez et al. (2014), Çerçi & Koçak (2016), this study.
European Turkey: Mutun (2003), Çerçi & Koçak (2016).
Comments: This species native to North America has been found first time from Europea (Italy) by Bernardinelli & Zandigiacomo (2000). This species is distributed in eastern Europe and Anatolia. It was recorded in Turkey by Mutun (2003) from Bolu and Tekirdağ and by Çerçi & Koçak (2016) from Artvin located along the border with Georgia. Distribution of this alien species is expanding to Caucasus and Iran. In this study, it has been found under a bark on Pinus sp. in Borabay (Amasya), (05.03.2015) and in Çavundur (06.09.2016) under Astragalus sp. during overwinter and for the first time from central Black Sea region and it has been found from Borabay (30.06.2016) on Juncus sp. (Juncaceae).
description: Published as part of Dursun, Ahmet & Fent, Meral, 2017, Annotated Checklist of Tingidae (Hemiptera: Heteroptera) in Turkey with new records for the faunas of Europe and Turkish Thrace, pp. 465-491 in Zootaxa 4347 (3) on page 472, DOI: 10.11646/zootaxa.4347.3.3, http://zenodo.org/record/1048601
Corythucha ciliata
Creators: name: Dursun, Ahmet
name: Fent, Meral
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Tingidae
Corythucha
Corythucha ciliata

description: Corythucha ciliata (Say, 1832)
Material examined: EUROPEAN TURKEY: Tekirdağ province: Malkara, Izgar, 04.10.2014, 145 m, 14♀♀, 10♂♂.
Asian Turkey: Mutun (2009), Hızal (2014), Kezik & Eroğlu (2014), Küçükbasmacı (2014).
European Turkey: Aysal & Kıvan (2011), this study.
Comments: This alien sycamore lace bug is known as an invasive species of Nearctic origin and is an oligophagous insect specialized especially on Platanus spp. It was found for the first time in Europe in Italy (Padova) in 1964. The specimens of C. ciliata overwinter as adults under leaf litter, crevices and lose bark (Rabitsch 2008; Mutun 2009).
description: Published as part of Dursun, Ahmet & Fent, Meral, 2017, Annotated Checklist of Tingidae (Hemiptera: Heteroptera) in Turkey with new records for the faunas of Europe and Turkish Thrace, pp. 465-491 in Zootaxa 4347 (3) on page 472, DOI: 10.11646/zootaxa.4347.3.3, http://zenodo.org/record/1048601
Paraharmotrema Dutton & Bullard 2022
Creators: name: Dutton, Haley R.
name: DuPreez, Louis H.
name: Urabe, Misako
name: Bullard, Stephen A.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Diplostomida
Liolopidae
Paraharmotrema

description: 3.1. Paraharmotrema Dutton & Bullard
3.1.1. Generic diagnosis
Body of adult extremely elongate, linguliform, approximately 6–9 × longer than wide, having tegumental spines/scales. Oral sucker slightly smaller than ventral sucker, ventral, subterminal, lacking unique spines/ scales. Ventral sucker minute, weakly muscular, in anterior 1/7 1/8 of body, inter-caecal, not spanning inter-caecal space. Intestine comprising paired caeca extending sinuously posteriad approximately in parallel with lateral body margin and nearly reaching posterior body extremity, lacking diverticula and lateral out-pocketings, bowing laterad at level of testes. Gonads inter-caecal, in posterior half of body, posterior to male and female terminal genitalia. Testes deeply lobed, transverse (markedly wider than long), tandem, medial, closely flanked by caeca, delimiting male and female proximal genitalia, in posterior half of body. Cirrus sac massive (spanning breadth of inter-caecal space), transverse or oblique, between ventral sucker and anterior testis, containing bipartite seminal vesicle, pars prostatica, and spined eversible cirrus. Common genital pore sinistral, ventral to sinistral caeca, post-acetabular, pre-testicular. Ovary lobed, dextral, inter-testicular, inter-caecal, nearest posterior testis. Vitellarium co-distributing with caeca from posterior to level of ventral sucker posteriad to posterior body end, not extending anteriad to level of intestinal bifurcation, not extending mediad far beyond excretory ducts. Uterus extremely elongate, sinuous, lateral to anterior testis (not ventral to anterior testis), containing many operculate eggs. Excretory system comprising lasso configuration dextrally and sinistrally (excretory system having a pair of ducts, each having an anterior cyclocoel-like portion and a posteriorly-directed collecting duct); excretory pore dorsal (subterminal). Intestinal parasites of turtles.
description: Published as part of Dutton, Haley R., DuPreez, Louis H., Urabe, Misako & Bullard, Stephen A., 2022, Paraharmotrema karinganiense n. gen., n. sp. (Digenea: Liolopidae) infecting the intestine of serrated hinged terrapin (Pelusios sinuatus), east African black mud turtle (Pelusios subniger), and South African helmeted turtle (Pelomedusa galeata) and a phylogenetic hypothesis for liolopid genera, pp. 43-52 in International Journal for Parasitology: Parasites and Wildlife 17 on page 46, DOI: 10.1016/j.ijppaw.2021.09.006, http://zenodo.org/record/10668222
Derephysia foliacea subsp. foliacea foliacea (Fallen 1807
Creators: name: Dursun, Ahmet
name: Fent, Meral
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Tingidae
Derephysia
Derephysia foliacea
Derephysia foliacea foliacea (fallén, 1807)

description: Derephysia foliacea foliacea (Fallén, 1807)
Material examined: ASIAN TURKEY: Erzincan province: Ahmetli, 1840 m, 21.06.2007, 1♂; EUROPEAN TURKEY: İstanbul province: Silivri, Küçüksinekli, 130 m, 13.06.2016, 1♂.
Asian Turkey: Horváth (1906), Hoberlandt (1956); Lodos & Önder (1983), Péricart (1981a, 1983), Péricart & Golub (1996), Önder et al. (2006).
European Turkey: This study. New record for the fauna of Turkish Thrace.
Comments: This Holomediterranean-Caspian species has been found for the first time in this study from Turkish Thrace. Horváth (1906) reported this species for the first time from Ephesus (İzmir province). It is known from İzmir (west Anatolia), Kocaeli (Marmara region) and Kastamonu (West Black Sea region) in Anatolia, Turkey (Önder et al. 2006).
description: Published as part of Dursun, Ahmet & Fent, Meral, 2017, Annotated Checklist of Tingidae (Hemiptera: Heteroptera) in Turkey with new records for the faunas of Europe and Turkish Thrace, pp. 465-491 in Zootaxa 4347 (3) on pages 472-473, DOI: 10.11646/zootaxa.4347.3.3, http://zenodo.org/record/1048601
Dictyla echii
Creators: name: Dursun, Ahmet
name: Fent, Meral
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Tingidae
Dictyla
Dictyla echii

description: Dictyla echii (Schrank, 1782)
Material examined: ASIAN TURKEY: Düzce province: 156 m, 11.05.2005, 1♂; Yığılca, Karakaş, 400 m, 13.07.2005, ♂; Giresun province: Alucra, Arda, 1515 m, 17.05.2006, 3♀♀; 29.06.2005, 1♀, 1♂; Gümüşhane province: Hasköy, 1176 m, 23.06.2007, 2♀♀, 1♂; Kelkit, Karaçayır, 1421 m, 22.06.2007, 1♂; Kars province: Akyaka, 1300 m, 01.08.2009, 1♀; Kastamonu province: Ilgaz, 1150 m, 21.08.2006, 1♀; Rize province: İkizdere, Ballıköy/ Anzer, 1870 m, 26.07.2005, 2♀♀; T o kat province: Niksar, Kümbetli, 385 m, 20.06.2006, 1♀; Reşadiye, Cemel, 560 m, 22.06.2006, 1♀; Çakmak, 507 m, 16.05.2008, 1♀; EUROPEAN TURKEY: Edirne province: Yolüstü, 140 m, 03.07.2013, 2♀♀, 2♂♂; Uzgaç, 08.07.2015, 157 m, 1♀, 1♂; Enez, Gülçavuş, 10 m, 20.07.2016, 1♀; Uzunköprü, 08.07.2009, 170 m, 3♀♀, 4♂♂; Seren, 08.07.2009, 180 m, 12♀♀, 8♂♂; İstanbul province: Silivri, Küçüksinekli, 70 m, 13.06.2016, 3♀♀, 2♂♂; Kırklareli province: Lüleburgaz, Düğüncübaşı, 270 m, 17.07.2016, 5♀♀, 4♂♂; Kırıkköy, 250 m, 17.07.2016, 7♀♀, 5♂♂; Lüleburgaz, Karamehmet, 130 m, 85 m, 16.07.2016, 1♂; Tekirdağ province: Muratlı, Ballıhoca, 125 m, 16.07.2016, 3♀♀, 4♂♂.
Asian Turkey: Horváth (1883, 1905, 1906, as Monanthia echii), Kiritshenko (1918, as Monanthia echii), Fahringer (1922, as Monanthia echii), Seidenstücker (1954, as M. echii and as Monanthia echii var. rufina; 1975), Hoberlandt (1956, as M. echii and as M.echii var. rufina), Linnavuori (1965), Lodos & Önder (1983), Péricart (1983), Péricart & Golub (1996), Önder et al. (2006), Kıyak & Akar (2010), Maral et al. (2013), Matocq et al. (2014), this study.
European Turkey: Fahringer (1922, as Monanthia echii), Hoberlandt (1956, as M. echii), Lodos & Önder (1983), Péricart & Golub (1996), Önder et al. (2006), this study.
Comments: This Holomediterranean species has been found for first time from Asia Minor (= Anatolia) by Horváth (1883) as Monanthia echii from Bursa.
description: Published as part of Dursun, Ahmet & Fent, Meral, 2017, Annotated Checklist of Tingidae (Hemiptera: Heteroptera) in Turkey with new records for the faunas of Europe and Turkish Thrace, pp. 465-491 in Zootaxa 4347 (3) on page 473, DOI: 10.11646/zootaxa.4347.3.3, http://zenodo.org/record/1048601
Trombicula (Trombicula) tibbettsi , Brennan & Yunker 1966
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Prostigmata
Trombiculidae
Trombicula
Trombicula tibbettsi

description: Trombicula (Trombicula) tibbettsi Brennan and White, 1960:
NEA
Eltonella (Coecicula) tibbettsi, Vercammen-Grandjean 1965d
Trombicula tibbettsi, Brennan & Yunker 1966a
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 186, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Trombicula (Trombicula) toldti Winkler 1953
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Prostigmata
Trombiculidae
Trombicula
Trombicula toldti

description: Trombicula (Trombicula) toldti Winkler, 1953:
PAL
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 186, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Gaseous mediators and mitochondrial function: the future of pharmacologically induced suspended animation?
Creators: name: Hartmann, Clair
name: Nußbaum, Benedikt Lukas
name: Calzia, Enrico
name: Radermacher, Peter
name: Wepler, Martin
Publisher: name: Universität Ulm
Year: 2017
Subjects: subject: suspended animation
subject: inhibition
subject: shock
subject: DDC 610 / Medicine & health
subject: Gasotransmitters; Therapeutic use
subject: Mitochondria
subject: Reactive oxygen species
subject: Hibernation
subject: Hypothermia
subject: Gas
subject: Cytoprotektion
subject: Hypothermie
subject: Mitochondrium

description: The role of nitric oxide (NO), carbon monoxide (CO), and hydrogen sulfide (H2S) as poisonous gases is well-established. However, they are not only endogenously produced but also, at low concentrations, exert beneficial effects, such as anti-inflammation, and cytoprotection. This knowledge initiated the ongoing debate, as to whether these molecules, also referred to as “gaseous mediators” or “gasotransmitters,” could serve as novel therapeutic agents. In this context, it is noteworthy, that all gasotransmitters specifically target the mitochondria, and that this interaction may modulate mitochondrial bioenergetics, thereby subsequently affecting metabolic function. This feature is of crucial interest for the possible induction of “suspended animation.” Suspended animation, similar to mammalian hibernation (and/or estivation), refers to an externally induced hypometabolic state, with the intention to preserve organ function in order to survive otherwise life-threatening conditions. This hypometabolic state is usually linked to therapeutic hypothermia, which, however, comes along with adverse effects (e.g., coagulopathy, impaired host defense). Therefore, inducing an on-demand hypometabolic state by directly lowering the energy metabolism would be an attractive alternative. Theoretically, gasotransmitters should reversibly interact and inhibit the mitochondrial respiratory chain during pharmacologically induced suspended animation. However, it has to be kept in mind that this effect also bears the risk of cytotoxicity resulting from the blockade of the mitochondrial respiratory chain. Therefore, this review summarizes the current knowledge of the impact of gasotransmitters on modulating mitochondrial function. Further, we will discuss their role as potential candidates in inducing a suspended animation.
Dictyla humuli
Creators: name: Dursun, Ahmet
name: Fent, Meral
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Tingidae
Dictyla
Dictyla humuli

description: Dictyla humuli (Fabricius, 1794)
Material examined: ASIAN TURKEY: Giresun province: Alucra, Arda, 1515 m, 17.05.2006, 1♀; 29.06.2005, 1♀, 1♂; 09.08.2007, 1450 m, 3♀♀; Hatay province: Hassa, Akbez, 450 m, 19.05.2010, 1♀.
Asian Turkey: Péricart (1983), Péricart & Golub (1996), this study.
Comments: This Euro-Siberian faunal element has been known to have a distribution only in Anatolia. In this study, it has been found for the first time from Central Black Sea and Mediterranean regions in Turkey.
description: Published as part of Dursun, Ahmet & Fent, Meral, 2017, Annotated Checklist of Tingidae (Hemiptera: Heteroptera) in Turkey with new records for the faunas of Europe and Turkish Thrace, pp. 465-491 in Zootaxa 4347 (3) on page 473, DOI: 10.11646/zootaxa.4347.3.3, http://zenodo.org/record/1048601
Dictyla lupuli
Creators: name: Dursun, Ahmet
name: Fent, Meral
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Tingidae
Dictyla
Dictyla lupuli

description: Dictyla lupuli (Herrich-Schäffer, 1837)
Asian Turkey: Hoberlandt (1956, as Monanthia lupuli), Lodos & Önder (1983), Péricart (1981, 1983), Péricart & Golub (1996), Önder et al., 2006).
European Turkey: Hoberlandt (1956, as Monanthia lupuli), Lodos & Önder (1983), Péricart (1983), Péricart & Golub (1996), Önder et al. (2006).
description: Published as part of Dursun, Ahmet & Fent, Meral, 2017, Annotated Checklist of Tingidae (Hemiptera: Heteroptera) in Turkey with new records for the faunas of Europe and Turkish Thrace, pp. 465-491 in Zootaxa 4347 (3) on page 473, DOI: 10.11646/zootaxa.4347.3.3, http://zenodo.org/record/1048601
Trombicula (Trombicula) truncata Brennan 1970
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Prostigmata
Trombiculidae
Trombicula
Trombicula truncata

description: Trombicula (Trombicula) truncata Brennan, 1970a:
NEO
Trombicula truncata, Jacinavicius et al. 2018c
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 186, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Dictyla nassata
Creators: name: Dursun, Ahmet
name: Fent, Meral
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Tingidae
Dictyla
Dictyla nassata

description: Dictyla nassata (Puton, 1874)
Material examined: ASIAN TURKEY: Giresun province: Alucra, Arda, 1515 m, 17.05.2005, 2♀♀; 09.08.2007, 3♀♀, 1♂; Aktepe, 07.08.2007, 1450 m, 1♀; EUROPEAN TURKEY: Edirne province: Korucuköy, 150 m, 01.06.2014, 1♀; Demirhanlı, Süloğlu, 165 m, 12♀♀, 8♂♂; Uzunköprü, 08.06.2016, 180 m, 1♀, 1♂.
Asian Turkey: Horváth (1905, as Monanthia putoni; 1906, as Monanthia nassata); Kiritshenko (1918, as M. putoni); Seidenstücker (1954, as M. putoni and M. nassata), Hoberlandt (1956, M. putoni and M. nassata), Lodos & Önder (1983 as Dictyla putoni and D. nassata); Péricart (1981, 1983); Péricart & Golub (1996), Önder et al. (2006, as D. putoni and D. nassata), Yıldırım et al. (2013); Maral et al. (2014); Matoq et al. (2014), Kıyak (2016), this study.
European Turkey: This study. New record for the fauna of Turkish Thrace.
Comments: This Ponto-Mediterranean species is widely distributed in Anatolia. It has been found for the first time from Asia Minor (Turkey) by Horváth (1905, 1906) as Monanthia putoni Montandon, 1895 from Kayseri and as Monanthia nassata Puton, 1874 without locality. In this study, it was found for the first time in Turkish Thrace.
description: Published as part of Dursun, Ahmet & Fent, Meral, 2017, Annotated Checklist of Tingidae (Hemiptera: Heteroptera) in Turkey with new records for the faunas of Europe and Turkish Thrace, pp. 465-491 in Zootaxa 4347 (3) on page 474, DOI: 10.11646/zootaxa.4347.3.3, http://zenodo.org/record/1048601
Transfinite diameter with generalized polynomial degree
Creators: name: Ma`u, Sione
Publisher: name: arXiv
Year: 2019
Subjects: subject: Complex Variables (math.CV)
subject: FOS: Mathematics
subject: 32U20

description: We prove a Chebyshev transform formula for a notion of (weighted) transfinite diameter that is defined using a generalized notion of polynomial degree. We also generalize Leja points to this setting. As an application of our main formula, we prove that in the unweighted case, these generalized Leja points recover the transfinite diameter.
description: 15 pages, 2 figures. Substantial changes in Section 3 were required to correct an erroneous argument in Section 4 of the original version
Reducible deformations and smoothing of primitive multiple curves
Creators: name: Drézet, Jean-Marc
Publisher: name: arXiv
Year: 2014
Subjects: subject: Algebraic Geometry (math.AG)
subject: FOS: Mathematics
subject: 14M05, 14B20

description: A primitive multiple curve is a Cohen-Macaulay irreducible projective curve $Y$ that can be locally embedded in a smooth surface, and such that $C=Y_{red}$ is smooth. In this case, $L={\mathcal I}_C/{\mathcal I}_C^2$ is a line bundle on $C$.
 This paper continues the study of deformations of $Y$ to curves with smooth irreducible components, when the number of components is maximal (it is then the multiplicity $n$ of $Y$). We prove that a primitive double curve can be deformed to reduced curves with smooth components intersecting transversally if and only if $h^0(L^{-1})\not=0$. We give also some properties of reducible deformations in the case of multiplicity $n>2$.
description: 22 pages
High prevalence of insecure attachment in patients with primary hypertension
Creators: name: Balint, Elisabeth Maria
name: Gander, Manuela
name: Pokorny, Dan
name: Funk, Alexandra Laura
name: Waller, Christiane
name: Buchheim, Anna
Publisher: name: Universität Ulm
Year: 2016
Subjects: subject: primary hypertension
subject: attachment representation
subject: somatic disease
subject: cardiovascular response
subject: cardiovascular reactivity
subject: DDC 610 / Medicine & health
subject: Hypertension
subject: Heart disease risk factors
subject: Hypertonie
subject: Stressreaktion

description: Hypertension is a major cardiovascular (CV) risk factor and is predicted by heightened CV reactivity to stress in healthy individuals. Patients with hypertension also show an altered stress response, while insecure attachment is linked to a heightened stress reactivity as well. This is the first study aiming to assess attachment representations in patients with primary hypertension and to investigate their CV responses when their attachment system is activated. We studied 50 patients (38 men, 12 women) with primary hypertension. The Adult Attachment Projective Picture System (AAP), a widely used and validated interview, was performed to measure the patients' attachment representations, and to activate their attachment system. Blood pressure and heart rate were measured after 10 min at rest prior to and directly after the AAP interview. Mood and state anxiety were assessed using the Multidimensional Mood State Questionnaire (MDBF) and the State Trait Anxiety Inventory-State (STAI-S) before and after the experiment. The prevalence of insecure attachment (dismissing, preoccupied, unresolved) in hypertensive patients was predominant (88%), while in non-clinical populations, only about 50% of individuals had insecure attachment patterns. Blood pressure (p < 0.001), heart rate (p = 0.016), and rate pressure product (p < 0.001) significantly increased in response to the attachment interview. Secure attached patients showed the highest rise in systolic blood pressure (p = 0.020) and the lowest heart rate compared to the other attachment groups (p = 0.043). However, attachment representation showed no significant group or interaction effects on diastolic blood pressure (DBP) and rate pressure product. Insecure attachment was highly over-represented in our sample of patients with primary hypertension. Additionally, a robust CV response to the attachment-activating stimulus was observed. Our data suggest that insecure attachment is significantly linked to primary hypertension, which implies the need for further investigations to evaluate attachment insecurity as a possible risk factor for hypertension.
Dictyla platyoma
Creators: name: Dursun, Ahmet
name: Fent, Meral
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Tingidae
Dictyla
Dictyla platyoma

description: Dictyla platyoma (Fieber, 1861)
Asian Turkey: Horváth (1906, as Monanthia platyoma); Kiritshenko (1918, as M. platyoma), Hoberlandt (1956, as M. platyoma), Lodos & Önder (1983), Péricart (1983), Péricart & Golub (1996), Önder et al. (2006); Yıldırım et al. (2013).
Comments: This species has been found first time from Asia Minor (Turkey) by Horváth (1906) as Monanthia platyoma Fieber, 1861 from Tokat.
description: Published as part of Dursun, Ahmet & Fent, Meral, 2017, Annotated Checklist of Tingidae (Hemiptera: Heteroptera) in Turkey with new records for the faunas of Europe and Turkish Thrace, pp. 465-491 in Zootaxa 4347 (3) on page 474, DOI: 10.11646/zootaxa.4347.3.3, http://zenodo.org/record/1048601
Dual PARP and RAD51 inhibitory drug conjugates show synergistic and selective effects on breast cancer cells
Creators: name: Malka, Matthews M.
name: Eberle, Julia
name: Niedermayer, Kathrin
name: Zlotos, Darius P.
name: Wiesmüller, Lisa
Publisher: name: Universität Ulm
Year: 2021
Subjects: subject: PARP inhibitor
subject: Olaparib
subject: RAD51 inhibitor
subject: drug conjugates
subject: anticancer drug hybrids
subject: triple-negative breast cancer
subject: DDC 610 / Medicine & health
subject: Poly(ADP-ribose) polymerase inhibitors
subject: Breast neoplasms; Drug therapy
subject: Antineoplastic agents; Therapeutic use
subject: Brustkrebs
subject: Cytostatikum

description: The genetic principle of synthetic lethality has most successfully been exploited in therapies engaging Poly-ADP-ribose-polymerase (PARP) inhibitors to treat patients with homologous recombination (HR)-defective tumors. In this work, we went a step further following the idea of a local molecular cooperation and designed hybrid compounds M1–M3. The drug conjugates M1–M3 combine Olaparib, the first PARP inhibitor approved for clinical use, with Cpd 1, an inhibitor of RAD51 that blocks its HR functions and yet permits RAD51 nucleoprotein filament formation on single-stranded DNA. While in M2 and M3, the parental drugs are linked by -CO-(CH2)n-CO-spacers (n = 2 and 4, respectively), they are directly merged omitting the piperazine ring of Olaparib in M1. Monitoring anti-survival effects of M1–M3 in six breast cancer cell lines of different molecular subtypes showed that in each cell line, at least one of the drug conjugates decreased viability by one to two orders of magnitude compared with parental drugs. While triple-negative breast cancer (TNBC) cells with frequent BRCA1 pathway dysfunction were sensitive to spacer-linked hybrid compounds M1 and M2 regardless of their HR capacities, non-TNBC cells were responsive to the merged drug conjugate M1 only, suggesting different spatial requirements for dual inhibition in these two groups of cell lines. These results demonstrate that, depending on chemical linkage, dual PARP1-RAD51 inhibitory drugs can either sensitize non-TNBC and re-sensitize TNBC cells, or discriminate between these groups of cells.
Trombicula (Trombicula) victoriensis Audy and Womersley 1957
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Prostigmata
Trombiculidae
Trombicula
Trombicula victoriensis

description: Trombicula (Trombicula) victoriensis Audy and Womersley, 1957:
AUS
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 186, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
The connected steady state model and the interdependence of the CSF proteome and CSF flow characteristics
Creators: name: Metzger, Fabian
name: Mischek, Daniel
name: Stoffers, Frédéric
Publisher: name: Universität Ulm
Year: 2017
Subjects: subject: blood-cerebrospinal fluid barrier
subject: CSF proteome
subject: DDC 510 / Mathematics
subject: DDC 610 / Medicine & health
subject: Neuroimmunology
subject: Autoimmune diseases of the nervous system
subject: Cerebrospinal fluid
subject: Blood-brain barrier
subject: Autoaggressionskrankheit
subject: Zentralnervensystem
subject: Liquor cerebrospinalis
subject: Blut-Hirn-Schranke
subject: Neuroimmunologie

description: Here we show that the hydrodynamic radii-dependent entry of blood proteins into cerebrospinal fluid (CSF) can best be modeled with a diffusional system of consecutive interdependent steady states between barrier-restricted molecular flux and bulk flow of CSF. The connected steady state model fits precisely to experimental results and provides the theoretical backbone to calculate the in-vivo hydrodynamic radii of blood-derived proteins as well as individual barrier characteristics. As the experimental reference set we used a previously published large-scale patient cohort of CSF to serum quotient ratios of immunoglobulins in relation to the respective albumin quotients. We related the inter-individual variances of these quotient relationships to the individual CSF flow time and barrier characteristics. We claim that this new concept allows the diagnosis of inflammatory processes with Reibergrams derived from population-based thresholds to be shifted to individualized judgment, thereby improving diagnostic sensitivity. We further use the source-dependent gradient patterns of proteins in CSF as intrinsic tracers for CSF flow characteristics. We assume that the rostrocaudal gradient of blood-derived proteins is a consequence of CSF bulk flow, whereas the slope of the gradient is a consequence of the unidirectional bulk flow and bidirectional pulsatile flow of CSF. Unlike blood-derived proteins, the influence of CSF flow characteristics on brain-derived proteins in CSF has been insufficiently discussed to date. By critically reviewing existing experimental data and by reassessing their conformity to CSF flow assumptions we conclude that the biomarker potential of brain-derived proteins in CSF can be improved by considering individual subproteomic dynamics of the CSF system.
On the Shifted Littlewood-Richardson Coefficients and Littlewood-Richardson Coefficients
Creators: name: Duc, Khanh Nguyen
Publisher: name: arXiv
Year: 2020
Subjects: subject: Representation Theory (math.RT)
subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: Primary 05E10, Secondary 05E05, 14M15

description: We give a new interpretation of the shifted Littlewood-Richardson coefficients $f_{λμ}^ν$ ($λ,μ,ν$ are strict partitions). The coefficients $g_{λμ}$ which appear in the decomposition of Schur $Q$-function $Q_λ$ into the sum of Schur functions $Q_λ= 2^{l(λ)}\sum_μg_{λμ}s_μ$ can be considered as a special case of $f_{λμ}^ν$ (here $λ$ is a strict partition of length $l(λ)$). We also give another description for $g_{λμ}$ as the cardinal of a subset of a set that counts Littlewood-Richardson coefficients $c_{μ^tμ}^{\tildeλ}$. This new point of view allows us to establish connections between $g_{λμ}$ and $c_{μ^t μ}^{\tildeλ}$. More precisely, we prove that $g_{λμ}=g_{λμ^t}$, and $g_{λμ} \leq c_{μ^tμ}^{\tildeλ}$. We conjecture that $g_{λμ}^2 \leq c^{\tildeλ}_{μ^tμ}$ and formulate some conjectures on our combinatorial models which would imply this inequality if it is valid.
description: 36 pages
Dictyla rotundata Herrich-Schaeffer 1835
Creators: name: Dursun, Ahmet
name: Fent, Meral
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Tingidae
Dictyla
Dictyla rotundata

description: Dictyla rotundata (Herrich- Schaeffer, 1835)
Material examined: EUROPEAN TURKEY: Edirne province: Uzunköprü, (lake coast), 08.07.2009, 150 m, 3♀♀; Seren, 08.07.2009, 180 m, 1♀.
Asian Turkey: Seidenstücker (1954, as Monanthia rotundata), Hoberlandt (1956, as M. rotundata); Lodos & Önder (1983); Péricart (1981a, 1983), Péricart & Golub (1996), Önder et al. (2006), Yıldırım et al. (2013). European Turkey: This study. New record for the fauna of Turkish Thrace.
description: Published as part of Dursun, Ahmet & Fent, Meral, 2017, Annotated Checklist of Tingidae (Hemiptera: Heteroptera) in Turkey with new records for the faunas of Europe and Turkish Thrace, pp. 465-491 in Zootaxa 4347 (3) on page 474, DOI: 10.11646/zootaxa.4347.3.3, http://zenodo.org/record/1048601
Artificial generation of representative single Li-ion electrode particle architectures from microscopy data
Creators: name: Furat, Orkun
name: Petrich, Lukas
name: Finegan, Donal P.
name: Diercks, David
name: Usseglio-Viretta, Francois
name: Smith, Kandler
name: Schmidt, Volker
Publisher: name: Universität Ulm
Year: 2021
Subjects: subject: Computational methods
subject: GAUSSIAN RANDOM-FIELDS
subject: DDC 540 / Chemistry & allied sciences
subject: DDC 620 / Engineering & allied operations
subject: Batteries (Ordnance)
subject: Computational methods in engineering
subject: Lithium
subject: Microstructure
subject: Batterie
subject: Lithium-Ionen-Akkumulator
subject: Mikrostruktur

description: Accurately capturing the architecture of single lithium-ion electrode particles is necessary for understanding their performance limitations and degradation mechanisms through multi-physics modeling. Information is drawn from multimodal microscopy techniques to artificially generate LiNi0.5Mn0.3Co0.2O2 particles with full sub-particle grain detail. Statistical representations of particle architectures are derived from X-ray nano-computed tomography data supporting an ‘outer shell’ model, and sub-particle grain representations are derived from focused-ion beam electron backscatter diffraction data supporting a ‘grain’ model. A random field model used to characterize and generate the outer shells, and a random tessellation model used to characterize and generate grain architectures, are combined to form a multi-scale model for the generation of virtual electrode particles with full-grain detail. This work demonstrates the possibility of generating representative single electrode particle architectures for modeling and characterization that can guide synthesis approaches of particle architectures with enhanced performance.
Dynamic in situ Control of Heat Rectification in Graphene Nano Ribbons using Electric Field-induced Strain
Creators: name: Shiri, Daryoush
name: Isacsson, Andreas
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: An increasing number of papers propose routes to implement thermal counterparts of electronic rectification. These schemes are mainly based on combinations of crystal anharmonicity and broken mirror symmetry. With respect to graphene, proposals pivot around shape asymmetry induced by using hetero-structures of nano-patterned or defected sections of pristine graphene. Using Molecular Dynamics (MD) we show that it suffices to split a graphene nano-ribbon into two unequal strained sections using external force which leads to large asymmetry in the forward and reverse heat fluxes. We find that the corresponding rectification ratio is enhanced by up to 60 %. Also, and more importantly, the polarity is controllable on-the-fly, i.e. by changing the position where force is applied. Based upon our results we propose a thermo-electric device which obviates the complex nano-patterning and lithography required to pattern graphene every time a new rectification value or sign is sought for, opening a route to simpler fabrication and characterization of phononic phenomena in 2D materials.
description: 9 pages, 5 figures
Dictyla sima Seidenstucker 1975
Creators: name: Dursun, Ahmet
name: Fent, Meral
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Tingidae
Dictyla
Dictyla sima

description: Dictyla sima Seidenstücker, 1975
Asian Turkey: Seidenstücker (1975), Lodos & Önder (1983), Péricart (1981, 1983), Péricart & Golub (1996), Önder et al. (2006), Matoq et al. (2014).
Comments: This endemic species is distributed only in Central Black Sea, Central Anatolia and Eastern Anatolia regions.
description: Published as part of Dursun, Ahmet & Fent, Meral, 2017, Annotated Checklist of Tingidae (Hemiptera: Heteroptera) in Turkey with new records for the faunas of Europe and Turkish Thrace, pp. 465-491 in Zootaxa 4347 (3) on page 474, DOI: 10.11646/zootaxa.4347.3.3, http://zenodo.org/record/1048601
Trombicula (Trombicula) walkerae Stekolnikov and Matthee 2019
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Prostigmata
Trombiculidae
Trombicula
Trombicula walkerae

description: Trombicula (Trombicula) walkerae Stekolnikov and Matthee, 2019:
AFR
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 186, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Pre-training technique to localize medical BERT and enhance biomedical BERT
Creators: name: Wada, Shoya
name: Takeda, Toshihiro
name: Manabe, Shiro
name: Konishi, Shozo
name: Kamohara, Jun
name: Matsumura, Yasushi
Publisher: name: arXiv
Year: 2020
Subjects: subject: Computation and Language (cs.CL)
subject: FOS: Computer and information sciences

description: Pre-training large-scale neural language models on raw texts has made a significant contribution to improving transfer learning in natural language processing (NLP). With the introduction of transformer-based language models, such as bidirectional encoder representations from transformers (BERT), the performance of information extraction from a free text by NLP has significantly improved for both the general domain and medical domain; however, it is difficult to train specific BERT models that perform well for domains in which there are few publicly available databases of high quality and large size. We hypothesized that this problem can be addressed by up-sampling a domain-specific corpus and using it for pre-training with a larger corpus in a balanced manner. Our proposed method consists of a single intervention with one option: simultaneous pre-training after up-sampling and amplified vocabulary. We conducted three experiments and evaluated the resulting products. We confirmed that our Japanese medical BERT outperformed conventional baselines and the other BERT models in terms of the medical document classification task and that our English BERT pre-trained using both the general and medical-domain corpora performed sufficiently well for practical use in terms of the biomedical language understanding evaluation (BLUE) benchmark. Moreover, our enhanced biomedical BERT model, in which clinical notes were not used during pre-training, showed that both the clinical and biomedical scores of the BLUE benchmark were 0.3 points above that of the ablation model trained without our proposed method. Well-balanced pre-training by up-sampling instances derived from a corpus appropriate for the target task allows us to construct a high-performance BERT model.
description: We made the pre-trained weights of ouBioBERT and the source code for fine-tuning freely available at https://github.com/sy-wada/blue_benchmark_with_transformers
Towards the Internet of Robotic Things: Analysis, Architecture, Components and Challenges
Creators: name: Afanasyev, Ilya
name: Mazzara, Manuel
name: Chakraborty, Subham
name: Zhuchkov, Nikita
name: Maksatbek, Aizhan
name: Kassab, Mohamad
name: Distefano, Salvatore
Publisher: name: arXiv
Year: 2019
Subjects: subject: Robotics (cs.RO)
subject: Networking and Internet Architecture (cs.NI)
subject: FOS: Computer and information sciences

description: Internet of Things (IoT) and robotics cannot be considered two separate domains these days. Internet of Robotics Things (IoRT) is a concept that has been recently introduced to describe the integration of robotics technologies in IoT scenarios. As a consequence, these two research fields have started interacting, and thus linking research communities. In this paper we intend to make further steps in joining the two communities and broaden the discussion on the development of this interdisciplinary field. The paper provides an overview, analysis and challenges of possible solutions for the Internet of Robotic Things, discussing the issues of the IoRT architecture, the integration of smart spaces and robotic applications.
Vector-relation configurations and plabic graphs
Creators: name: Affolter, Niklas
name: Glick, Max
name: Pylyavskyy, Pavlo
name: Ramassamy, Sanjay
Publisher: name: arXiv
Year: 2019
Subjects: subject: Combinatorics (math.CO)
subject: Dynamical Systems (math.DS)
subject: FOS: Mathematics

description: We study a simple geometric model for local transformations of bipartite graphs. The state consists of a choice of a vector at each white vertex made in such a way that the vectors neighboring each black vertex satisfy a linear relation. Evolution for different choices of the graph coincides with many notable dynamical systems including the pentagram map, $Q$-nets, and discrete Darboux maps. On the other hand, for plabic graphs we prove unique extendability of a configuration from the boundary to the interior, an elegant illustration of the fact that Postnikov's boundary measurement map is invertible. In all cases there is a cluster algebra operating in the background, resolving the open question for $Q$-nets of whether such a structure exists.
description: 32 pages, 22 figures, to appear in Selecta Mathematica
Malayodracon Denzer, Manthey, Mahlow & Böhme, 2015, gen. nov.
Creators: name: Denzer, Wolfgang
name: Manthey, Ulrich
name: Mahlow, Kristin
name: Böhme, Wolfgang
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Reptilia
Squamata
Agamidae
Malayodracon

description: Malayodracon gen. nov.
Type species: Gonyocephalus robinsonii Boulenger, 1908; Type locality: Gunong (=Gunung / Mt.) Tahan (5,200 ft / 1,585 m), Pahang, Malaysia; the holotype (by monotypy) is deposited in the British Museum Natural History BMNH 1946.8.14.81 (previously BMNH 1906.2.28.8); collected by H.C. Robinson.
description: Published as part of Denzer, Wolfgang, Manthey, Ulrich, Mahlow, Kristin & Böhme, Wolfgang, 2015, The systematic status of Gonocephalus robinsonii Boulenger, 1908 (Squamata: Agamidae: Draconinae), pp. 129-144 in Zootaxa 4039 (1) on page 137, DOI: 10.11646/zootaxa.4039.1.5, http://zenodo.org/record/234816
Dictyla triconula
Creators: name: Dursun, Ahmet
name: Fent, Meral
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Tingidae
Dictyla
Dictyla triconula

description: Dictyla triconula (Seidenstücker, 1954)
Material examined: ASIAN TURKEY: Amasya province: Boğaziçi, 450 m, 19.05.2009, 1♀; Giresun province: Alucra, Aktepe, 1570 m, 08.08.2007, 2♀♀, 3♂♂.
Asian Turkey: Seidenstücker (1954, as Monanthia triconula), Hoberlandt (1956, as M. triconula) Lodos & Önder (1983), Péricart (1983), Péricart & Golub (1996), Önder et al. (2006), this study.
Comments: This species has been described from Bolkar Mountain (Mersin province) as Monanthia triconula. In this study, it has been found for the first time from Central Black Sea region.
description: Published as part of Dursun, Ahmet & Fent, Meral, 2017, Annotated Checklist of Tingidae (Hemiptera: Heteroptera) in Turkey with new records for the faunas of Europe and Turkish Thrace, pp. 465-491 in Zootaxa 4347 (3) on page 474, DOI: 10.11646/zootaxa.4347.3.3, http://zenodo.org/record/1048601
A weak version of the Strong Exponential Closure
Creators: name: D'Aquino, Paola
name: Fornasiero, Antongiulio
name: Terzo, Giuseppina
Publisher: name: arXiv
Year: 2019
Subjects: subject: Logic (math.LO)
subject: FOS: Mathematics
subject: 03C60, 11D61, 11U09

description: Assuming Schanuel's Conjecture we prove that for any variety V over the algebraic closure over the rational numbers, of dimension n and with dominant projections, there exists a generic point in V. We obtain in this way many instances of the Strong Exponential Closure introduced by Zilber.
description: 7 pages, AAM