cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1: of Cysteine-rich intestinal protein 1 suppresses apoptosis and chemosensitivity to 5-fluorouracil in colorectal cancer through ubiquitin-mediated Fas degradation
Creators: name: Zhang, Lanzhi
name: Zhou, Rui
name: Zhang, Weibin
name: Yao, Xueqing
name: Li, Weidong
name: Xu, Lijun
name: Sun, Xuegang
name: Zhao, Liang
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Table S1. The primers used in real-time PCR detection. Figure S1. Flow cytometry and EdU incorporation assay investigated the effects of CRIP1 on the cell cycle of CRC cells. Figure S2. Effects of CRIP1 on the growth of subcutaneous tumors. Figure S3. Western blot assay was used to detect the silencing efficiency of siRNA for FAS in HCT116 cells. Figure S4. Annexin V-FITC/PI flow cytometry assay showed the effects of Fas siRNA on 5-FU induced apoptosis in indicated cells. Figure S5. Immunofluorescence staining shows the localization of CRIP1 and Fas in CRC tissues. Figure S6. Fas expression was detected in CRIP1-overexpressing cells after MG132 or CHX treatment at different time. Figure S7. Effects of CRIP1 on the expression of Fas ligand (FasL). (DOCX 5746 kb)
Table S10 from Space partitioning in wild, non-territorial mountain gorillas: the impact of food and neighbours
Creators: name: Seiler, Nicole
name: Boesch, Christophe
name: Mundry, Roger
name: Stephens, Colleen
name: Robbins, Martha M.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 60801 Animal Behaviour

description: Random effects for the permutation test and the mixed model results
Section S3 from Space partitioning in wild, non-territorial mountain gorillas: the impact of food and neighbours
Creators: name: Seiler, Nicole
name: Boesch, Christophe
name: Mundry, Roger
name: Stephens, Colleen
name: Robbins, Martha M.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 60801 Animal Behaviour

description: Utilization of an area
Additional file 1 of Practical identifiability in the frame of nonlinear mixed effects models: the example of the in vitro erythropoiesis
Creators: name: Duchesne, Ronan
name: Guillemin, Anissa
name: Gandrillon, Olivier
name: Crauste, Fabien
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified

description: Additional file 1. Supplementary Materials.
Table S11 from Space partitioning in wild, non-territorial mountain gorillas: the impact of food and neighbours
Creators: name: Seiler, Nicole
name: Boesch, Christophe
name: Mundry, Roger
name: Stephens, Colleen
name: Robbins, Martha M.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 60801 Animal Behaviour

description: Mean and standard deviation of the original values of the predictor variables
Section S5 from Space partitioning in wild, non-territorial mountain gorillas: the impact of food and neighbours
Creators: name: Seiler, Nicole
name: Boesch, Christophe
name: Mundry, Roger
name: Stephens, Colleen
name: Robbins, Martha M.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 60801 Animal Behaviour

description: Determination of the date at which sufficient data on previous use were available
Section S4 from Space partitioning in wild, non-territorial mountain gorillas: the impact of food and neighbours
Creators: name: Seiler, Nicole
name: Boesch, Christophe
name: Mundry, Roger
name: Stephens, Colleen
name: Robbins, Martha M.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 60801 Animal Behaviour

description: Unhabituated groups
Additional file 4: of Quantification of intrinsic subtype ambiguity in Luminal A breast cancer and its relationship to clinical outcomes
Creators: name: Kumar, Neeraj
name: Zhao, Dan
name: Bhaumik, Dulal
name: Sethi, Amit
name: Gann, Peter
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Hematology

description: Table S2. Clinical characteristics of patients in the TCGA cohort with Luminal A breast cancer, classified by Distance Ratio purity. (DOCX 20 kb)
Section S7 from Space partitioning in wild, non-territorial mountain gorillas: the impact of food and neighbours
Creators: name: Seiler, Nicole
name: Boesch, Christophe
name: Mundry, Roger
name: Stephens, Colleen
name: Robbins, Martha M.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 60801 Animal Behaviour

description: Statistical analysis
Galaxy catalogs from the SAGE Semi-Analytic Model calibrated on THE THREE HUNDRED hydrodynamical simulations: A method to push the limits toward lower mass galaxies in dark matter only clusters simulations
Creators: name: Gómez, Jonathan S.
name: Yepes, Gustavo
name: Muñoz, A. Jiménez
name: Cui, Weiguang
Publisher: name: arXiv
Year: 2024
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: The new generation of upcoming deep photometric and spectroscopic surveys will allow us to measure the astrophysical properties of faint galaxies in massive clusters. This would demand to produce simulations of galaxy clusters with better mass resolution than the ones available today if we want to make comparisons between the upcoming observations and predictions of cosmological models. But producing full-physics hydrodynamical simulations of the most massive clusters is not an easy task. This would involve billions of computational elements to reliably resolve low mass galaxies similar to those measured in observations. On the other hand, dark matter only simulations of cluster size halos can be done with much larger mass resolution but at the cost of having to apply a model that populate galaxies within each of the subhalos in these simulations. In this paper we present the results of a new set of dark matter only simulations with different mass resolutions within the THE THREE HUNDRED project. We have generated catalogs of galaxies with stellar and luminosity properties by applying the SAGE Semi-Analytical Model of galaxy formation. To obtain the catalogs consistent with the results from hydrodynamical simulations, the internal physical parameters of SAGE were calibrated with the Particle Swarm Optimization method using a subset of full-physics runs with the same mass resolution than the dark matter only ones.
description: To appear in Proc. of the mm Universe 2023 conference, Grenoble (France), June 2023, published by F. Mayet et al. (Eds), EPJ Web of conferences, EDP Sciences
Additional file 1 of Analysis of the sagittal root angle and its correlation with hard and soft tissue indices in anterior teeth for immediate implant evaluation: a retrospective study
Creators: name: Shi, Mengru
name: Wang, Xiaoshuang
name: Zeng, Peisheng
name: Liu, Haiwen
name: Gong, Zhuohong
name: Lin, Yixiong
name: Li, Zhipeng
name: Chen, Zetao
name: Chen, Zhuofan
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Space Science
subject: Physical Sciences not elsewhere classified
subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Plant Biology

description: Additional file 1. Fig. S1: Standardized protocols were used to obtain the sagittal sections to be used for measurement. (a) The red line shows the tooth axis (TA) in the sagittal plane, crossing the incisor and apical points. The white line shows the corresponding alveolar bone axis (BA). The angle between TA and BA (TA-BA) was measured in degrees. (b)The white dotted line is parallel to CEJ, and the number after C represents the vertical distance to CEJ. The red line segment represents the corresponding soft tissue thickness, and the green line segment represents the thickness of the labial bone. There is only soft tissue thickness information on C-0 line. (c)The white dotted line is parallel to CEJ, and the number after C represents the vertical distance to CEJ. The green line segment represents the corresponding thickness of the palatal bone. (d)The R-0 line is parallel to the CEJ and passes through the apical point, and the R-2 and R-4 lines are parallel to the R-0 line and are separated by 2mm and 4mm, respectively. The green part represents the thickness of the labial and palatal wall. (e)Green lines represent bone dimensions below the apex, including the length of the root apex to the alveolar palatal plane((TA-or-BA-Apex to Palate), measured along the long axis of the anterior tooth (CE line) and the corresponding alveolar bone axis( DF line). (f)The white dotted line represents the line parallel to CEJ. The yellow ones represent the root dimension.
MPEC 2024-F74 : DAILY ORBIT UPDATE (2024 March 22)
Creators: name: Minor Planet Center Staff
Publisher: name: The Minor Planet Center
Year: 2024
Subjects: subject: Small Solar System bodies
valueUri: http://astrothesaurus.org/uat/1469

description: The Minor Planet Electronic Circulars contain information on unusual minor planets, routine data on comets and natural satellites, and occasional editorial announcements.  They are published on behalf of Division F of the International Astronomical Union by the Minor Planet Center, Smithsonian Astrophysical Observatory, Cambridge, MA 02138, U.S.A.
Section S2 from Space partitioning in wild, non-territorial mountain gorillas: the impact of food and neighbours
Creators: name: Seiler, Nicole
name: Boesch, Christophe
name: Mundry, Roger
name: Stephens, Colleen
name: Robbins, Martha M.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 60801 Animal Behaviour

description: Herbaceous food availability per grid cell
Additional file 2 of Analysis of the sagittal root angle and its correlation with hard and soft tissue indices in anterior teeth for immediate implant evaluation: a retrospective study
Creators: name: Shi, Mengru
name: Wang, Xiaoshuang
name: Zeng, Peisheng
name: Liu, Haiwen
name: Gong, Zhuohong
name: Lin, Yixiong
name: Li, Zhipeng
name: Chen, Zetao
name: Chen, Zhuofan
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Space Science
subject: Physical Sciences not elsewhere classified
subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Plant Biology

description: Additional file 2. Fig. S2. The process of entering DICOM and STL files into Adobe Illustrator Software to get standard screenshots with hard tissue and soft tissue information.
Section S9 from Space partitioning in wild, non-territorial mountain gorillas: the impact of food and neighbours
Creators: name: Seiler, Nicole
name: Boesch, Christophe
name: Mundry, Roger
name: Stephens, Colleen
name: Robbins, Martha M.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 60801 Animal Behaviour

description: Proportions of dyadic annual home range and core area overlap
Figure S6 from Space partitioning in wild, non-territorial mountain gorillas: the impact of food and neighbours
Creators: name: Seiler, Nicole
name: Boesch, Christophe
name: Mundry, Roger
name: Stephens, Colleen
name: Robbins, Martha M.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 60801 Animal Behaviour

description: Graphical representation of a group's decision regarding which of the surrounding grid cells to choose
Additional file 1 of Postmortem gene expression profiles in the habenulae of suicides: implication of endothelial dysfunction in the neurovascular system
Creators: name: Kim, Hyun Jung
name: Yoo, Hyeijung
name: Kim, Ji Yeon
name: Yang, Soo Hyun
name: Lee, Hyun Woo
name: Lee, Heon-Jeong
name: Son, Gi Hoon
name: Kim, Hyun
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Developmental Biology
subject: Cancer
subject: Mental Health
subject: Computational Biology

description: Additional file 1. Materials and methods including subject information, RNA isolation, microarray analysis, and subsequent bioinformatic analyses.
title: ADCO, Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome V, Cart. 189 (11 H 74), 316 folios, f. 0015v
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome V, Archives départementales de la Côte-d'Or, Cart. 189 (11 H 74), 316 folios, f. 0015v, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome V, Archives départementales de la Côte-d'Or, Cart. 189 (11 H 74), 316 folios, f. 0015v, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: abbaye de Cîteaux
Additional file 1: of Quantification of intrinsic subtype ambiguity in Luminal A breast cancer and its relationship to clinical outcomes
Creators: name: Kumar, Neeraj
name: Zhao, Dan
name: Bhaumik, Dulal
name: Sethi, Amit
name: Gann, Peter
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology

description: Table S1. Top ten genes ranked by differences in gene expression between Tertile 1 (pure) and Tertile 3 (admixed) Luminal A cases in METABRIC. (DOCX 17 kb)
SMILES-based QSAR and molecular docking study of xanthone derivatives as α-glucosidase inhibitors
Creators: name: Ahmadi, Shahin
name: Moradi, Zohreh
name: Kumar, Ashwani
name: Almasirad, Ali
Publisher: name: Taylor & Francis
Year: 2021
Subjects: Biochemistry
Space Science
Medicine
Molecular Biology
Pharmacology
Chemical Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Information Systems not elsewhere classified
Developmental Biology

description: Increasing diabetic population is one of the major health concerns all over the world. Inhibition of α-glucosidase is a clinically proved and attractive strategy to manage diabetes. In this study, robust and reliable QSAR models to predict α-glucosidase inhibitory potential of xanthone derivatives are developed by the Monte Carlo technique. The chemical structures are represented by SMILES notation without any 3D-optimization. The significance of the index of ideality correlation (IIC) with applicability domain (AD) is also studied in depth. The models developed using CORAL software by considering IIC criteria are found to be statistically more significant and robust than simple balance of correlation. The QSAR models are validated by both internal and external validation methods. The promoters of increase and decrease of activity are also extracted and interpreted in detail. The interpretation of developed models explains the role of different structural attributes in predicting the pIC50 of xanthone derivatives as α-glucosidase inhibitors. Based on the results of model interpretation, modifications are done on some xanthone derivatives and 15 new molecules are designed. The α-glucosidase inhibitory activity of novel molecules is further supported by docking studies.
title: Supporting Information to Abdulhameed et al., 2020, Tectonics
Creators: name: Ratschbacher, Lothar
Publisher: name: Technische Universität Bergakademie Freiberg
Year: 2020
Subjects: Geological Science

description: Supporting Information for Publication Tajik Basin and Southwestern Tian Shan, Northwestern India-Asia Collision Zone: 2. Timing of Basin Inversion, Tian Shan Mountain Building, and Relation to Pamir-Plateau Advance and Deep India-Asia Indentation by Abdulhameed et al., Tectonics, 39, 2020 Supporting information Content Supporting information Text S1 Tables S1 to S3 Figure S1 to Figure S4 Dataset S1 with Tables S4 to Table S6
360∘ Stereo Image Composition with Depth Adaption
Creators: name: Huang, Kun
name: Zhang, Fanglue
name: Zhao, Junhong
name: Li, Yiheng
name: Dodgson, Neil
Publisher: name: Open Access Te Herenga Waka-Victoria University of Wellington
Year: 2023
Subjects: classificationCode: 460702
subject: Computer graphics

description: 360∘ images and videos have become an economic and popular way to provide VR experiences using real-world content. However, the manipulation of the stereo panoramic content remains less explored. In this paper, we focus on the 360∘ image composition problem, and develop a solution that can take an object from a stereo image pair and insert it at a given 3D position in a target stereo panorama, with well-preserved geometry information. Our method uses recovered 3D point clouds to guide the composited image generation. More specifically, we observe that using only a one-off operation to insert objects into equirectangular images will never produce satisfactory depth perception and generate ghost artifacts when users are watching the result from different view directions. Therefore, we propose a novel view-dependent projection method that segments the object in 3D spherical space with the stereo camera pair facing in that direction. A deep depth densification network is proposed to generate depth guidance for the stereo image generation of each view segment according to the desired position and pose of the inserted object. We finally merge the synthesized view segments and blend the objects into the target stereo 360∘ scene. A user study demonstrates that our method can provide good depth perception and removes ghost artifacts. The view-dependent solution is a potential paradigm for other content manipulation methods for 360∘ images and videos.
title: Effects of Organic Matter and Iron-Rich Clay on Mobility of Trace Metals From Flue Dust Contaminated Soil
Creators: name: Lewis, Scott Ephraim
Publisher: name: Old Dominion University
publisherIdentifier: https://ror.org/04zjtrb98
publisherIdentifierScheme: ROR
Year: 1999

description: The enhanced leaching of trace metals through soil becomes a concern for human health if dissolved trace metals reach groundwater and migrate into a public water system. A serial batch extraction procedure was implemented to determine the effects of Vitagrow © organic matter and Fe-Rich TM clay on the mobility of trace metals (Zn, Pb, and Cd) from a flue dust treated (0, 600, 1200, and 2400 μgig Zn) Appling soil.

The addition of an organic matter (OM) amendment to the Appling soil enhanced Pb mobility and reduced soluble Zn and Cd. In general, average solution concentrations of trace metals increased with each increase in flue dust treatment level, however there were some exceptions. The OM amendment increased the amount of soluble Pb able to reach groundwater by an average of 1.92 μg/L. This increase was 5.49 μg/L with the 0 μgig Zn flue dust level, but only 0.90 μg/L with the 2400 μgig Zn flue dust level. The reduction in soluble Pb able to reach groundwater is due to an increase in pH associated with the higher flue dust treatment level (2400 μgig Zn). Based upon these data, the OM amendment will not significantly increase the risk of groundwater contamination.

The Fe-rich clay distinctly increased the pH and reduced the concentration of soluble trace metals (Zn, Pb, Cd) in the upper part of each simulated column immediately after it was added. The basicity introduced by the Fe-rich was quickly neutralized and pH began to decrease through the rest of each column.

The addition of organic matter to this flue dust contaminated soil will significantly reduce the concentrations of Zn and Cd able to reach groundwater. In addition, liming and maintenance of high pH levels will greatly reduce trace metal leaching through this soil. Fe-rich clay should be used in conjunction with lime and organic matter to nullify the effects of free ionic and soluble organic complex transport of Pb.
Section S12 from Space partitioning in wild, non-territorial mountain gorillas: the impact of food and neighbours
Creators: name: Seiler, Nicole
name: Boesch, Christophe
name: Mundry, Roger
name: Stephens, Colleen
name: Robbins, Martha M.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 60801 Animal Behaviour

description: References for Supplementary Material
Sensor Fusion for Autonomous Indoor UAV Navigation in Confined Spaces
Creators: name: James, Alice
name: Seth, Avishkar
name: Kuantama, Endrowednes
name: Mukhopadhyay, Subhas
name: Han, Richard
Publisher: name: arXiv
Year: 2024
Subjects: subject: Robotics (cs.RO)
subject: FOS: Computer and information sciences

description: In this paper, we address the challenge of navigating through unknown indoor environments using autonomous aerial robots within confined spaces. The core of our system involves the integration of key sensor technologies, including depth sensing from the ZED 2i camera, IMU data, and LiDAR measurements, facilitated by the Robot Operating System (ROS) and RTAB-Map. Through custom designed experiments, we demonstrate the robustness and effectiveness of this approach. Our results showcase a promising navigation accuracy, with errors as low as 0.4 meters, and mapping quality characterized by a Root Mean Square Error (RMSE) of just 0.13 m. Notably, this performance is achieved while maintaining energy efficiency and balanced resource allocation, addressing a crucial concern in UAV applications. Flight tests further underscore the precision of our system in maintaining desired flight orientations, with a remarkable error rate of only 0.1%. This work represents a significant stride in the development of autonomous indoor UAV navigation systems, with potential applications in search and rescue, facility inspection, and environmental monitoring within GPS-denied indoor environments.
description: 6 pages, 8 figures
Section S8 from Space partitioning in wild, non-territorial mountain gorillas: the impact of food and neighbours
Creators: name: Seiler, Nicole
name: Boesch, Christophe
name: Mundry, Roger
name: Stephens, Colleen
name: Robbins, Martha M.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 60801 Animal Behaviour

description: Sensitivity analyses to test the robustness of the chosen bandwidth h
title: ADCO, Cart. 186 (11 H 71), f. 0437r
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, t. II (XVe siècle), tome II, Archives départementales de la Côte-d'Or, C
art. 186 (11 H 71). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, t. II (XVe siècle), tome II, Archives départementales de la
 Côte-d'Or, Cart. 186 (11 H 71), f. 0437r, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-
project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Stabilising PID tuning for a class of fourth-order integrating nonminimum-phase systems
Creators: name: Seer, Qiu Han
name: Jobrun Nandong
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Fed-batch fermentation processes are commonly used in bioprocessing industry. A fed-batch fermentation process often exhibits integrating/unstable type of dynamics with multiple right-half plane zeros. A class of fourth-order integrating model can be used to adequately represent such a complex dynamics of the fed-batch fermentation process. In this paper, rigorous stability analysis of proportional-integral-derivative (PID) controller based on the Routh-Hurwitz criteria for the fourth-order integrating system is presented. A set of all stabilising PID controller parameter regions is established. Based on these stabilising regions, a general PID controller tuning procedure is proposed for the fourth-order integrating system with two right-half plane zeros. Numerical study shows that based on the proposed tuning procedure, a low-order PID controller can outperform a fifth-order optimal LQG controller in terms of servo and regulatory controls.
Classification errors rates for dataset 1 from Navigating features: a topologically informed chart of electromyographic features space
Creators: name: Angkoon Phinyomark
name: Khushaba, Rami N.
name: Ibáñez-Marcelo, Esther
name: Patania, Alice
name: Scheme, Erik
name: Petri, Giovanni
Publisher: name: The Royal Society
Year: 2017
Subjects: Computational Biology

description: The success of biological signal pattern recognition depends crucially on the selection of relevant features. Across signal and imaging modalities, a large number of features have been proposed, leading to feature redundancy and the need for optimal feature set identification. A further complication is that, due to the inherent biological variability, even the same classification problem on different datasets can display variations in the respective optimal sets, casting doubts on the generalizability of relevant features. Here, we approach this problem by leveraging topological tools to create charts of features spaces. These charts highlight feature sub-groups that encode similar information (and their respective similarities) allowing for a principled and interpretable choice of features for classification and analysis. Using multiple electromyographic (EMG) datasets as a case study, we use this feature chart to identify functional groups among 58 state-of-the-art EMG features, and to show that they generalize across three different forearm EMG datasets obtained from able-bodied subjects during hand and finger contractions. We find that these groups describe meaningful non-redundant information, succinctly recapitulating information about different regions of feature space. We then recommend representative features from each group based on maximum class separability, robustness and minimum complexity.
ReACKed QUICer: Measuring the Performance of Instant Acknowledgments in QUIC Handshakes
Creators: name: Mücke, Jonas
name: Nawrocki, Marcin
name: Hiesgen, Raphael
name: Schmidt, Thomas C.
name: Wählisch, Matthias
Publisher: name: arXiv
Year: 2024
Subjects: subject: Networking and Internet Architecture (cs.NI)
subject: FOS: Computer and information sciences

description: In this paper, we present a detailed performance analysis of QUIC instant ACK, a standard-compliant approach to reduce waiting times during the QUIC connection setup in common CDN deployments. To understand the root causes of the performance properties, we combine numerical analysis and the emulation of eight QUIC implementations using the QUIC Interop Runner. Our experiments comprehensively cover packet loss and non-loss scenarios, different round trip times, and TLS certificate sizes. To clarify instant ACK deployments in the wild, we conduct active measurements of 1M popular domain names. For almost all domain names under control of Cloudflare, Cloudflare uses instant ACK, which in fact improves performance. We also find, however, that instant ACK may lead to unnecessary retransmissions or longer waiting times under some network conditions, raising awareness of drawbacks of instant ACK in the future.
description: camera-ready
Supplementary Material: Supporting analytical data from Better together: synergy in nanocellulose blends
Creators: name: Mautner, Andreas
name: Mayer, Florian
name: Hervy, Martin
name: Koon-Yang Lee
name: Bismarck, Alexander
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: 30399 Macromolecular and Materials Chemistry not elsewhere classified
subject: FOS: Chemical sciences

description: TEM image TEMPO CNF, results of Mw determination of (r-)BC and conductometric titration, FT-IR spectra of pulp and TEMPO-CNF, all single results of BC nanopaper tensile tests and a schemactic of freacture toughness samples as well as a photograph of actual samples.
Sensitivity enhancement of aminoglycosides in hydrophilic interaction liquid chromatography with tandem mass spectrometry by post-column addition of trace sodium acetate in methanol
Creators: name: Asakawa, Daichi
name: Uemura, Masako
name: Sakiyama, Takanori
name: Testuo Yamano
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified

description: The development of a sensitive and accurate analytical method for monitoring aminoglycosides in food, environmental, and clinical samples is needed for many purposes. This study found that the responses of sodiated and protonated aminoglycosides in hydrophilic interaction chromatography with tandem mass spectrometry were enhanced upon addition of sodium acetate in methanol (5 mg L−1 at a flow rate of 0.2 mL min−1) as a post-column reagent. The sensitivities of sodiated spectinomycin, kanamycin, gentamicins, neomycin, and amikacin were significantly higher than those of the protonated molecules. Streptomycin and dihydrostreptomycin only formed protonated molecules, suggesting the preferential ionisation of the guanidine moieties in these aminoglycosides. The limits of quantification of these aminoglycosides were 0.19–2.5 ng mL−1. Notably, this is the first quantification of aminoglycosides that uses the sodiated molecules. The enhancement technique enables us to eliminate a concentration step from the clean-up process from food samples. We also proposed a rapid analytical method for residual aminoglycosides in milk and meat samples; validation showed good accuracy and precision of this method at the Japanese maximum residual limits of aminoglycosides (40–500 µg kg−1). The application of this method to contaminated bovine tissues revealed remarkably high residual levels of kanamycin. This technique will be useful for the sensitive detection of aminoglycosides not only in food, but also in environmental samples and human plasma.
Supporting Information from Optimization of cellulose nanocrystal length and surface charge density through phosphoric acid hydrolysis
Creators: name: Vanderfleet, Oriana M.
name: Osorio, Daniel A.
name: Cranston, Emily D.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: 90499 Chemical Engineering not elsewhere classified
subject: FOS: Chemical engineering
subject: 30399 Macromolecular and Materials Chemistry not elsewhere classified
subject: FOS: Chemical sciences
subject: 100799 Nanotechnology not elsewhere classified
subject: FOS: Nanotechnology

description: Cellulose nanocrystals (CNCs) are emerging nanomaterials with a large range of potential applications. CNCs are typically produced through acid hydrolysis with sulfuric acid; however, phosphoric acid has the advantage of generating CNCs with higher thermal stability. This paper presents a design of experiments approach to optimize the hydrolysis of CNCs from cotton with phosphoric acid. Hydrolysis time, temperature and acid concentration were varied across nine experiments and a linear least-squares regression analysis was applied to understand the effects of these parameters on CNC properties. In all but one case, rod-shaped nanoparticles with a high degree of crystallinity and thermal stability were produced. A statistical model was generated to predict CNC length, and trends in phosphate content and zeta potential were elucidated. The CNC length could be tuned over a relatively large range (238–475 nm) and the polydispersity could be narrowed most effectively by increasing the hydrolysis temperature and acid concentration. The CNC phosphate content was most affected by hydrolysis temperature and time; however, the charge density and colloidal stability was considered low compared with sulfuric acid hydrolysed CNCs. This study provides insight into weak acid hydrolysis and proposes ‘design rules’ for CNCs with improved size uniformity and charge density.This article is part of a discussion meeting issue ‘New horizons for cellulose nanotechnology’.
title: ADCO, Troisième cartulaire de Saint-Étienne de Dijon (XVIe), Cart. 23 (G 127), 310 folios, f. 00071
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2011
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: cartulaire
subject: Chartes de la Bourgogne du Moyen Âge

description: Troisième cartulaire de Saint-Étienne de Dijon (XVIe), Archives départementales de la Côte-d'Or, Cart. 23 (G 127), 310 folios, f. 00071, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Troisième cartulaire de Saint-Étienne de Dijon (XVIe), Archives départementales de la Côte-d'Or, Cart. 23 (G 127), 310 folios, f. 00071, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
Supplementary Methods, Tables, Figures from Coral calcification mechanisms facilitate adaptive responses to ocean acidification
Creators: name: Schoepf, Verena
name: Jury, Christopher P.
name: Toonen, Robert J.
name: McCulloch, Malcolm T.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Physiology
subject: FOS: Biological sciences
subject: Environmental Science
subject: Ecology

description: Ocean acidification (OA) is a pressing threat to reef-building corals, but it remains poorly understood how coral calcification is inhibited by OA and whether corals could acclimatize and/or adapt to OA. Using a novel geochemical approach, we reconstructed the carbonate chemistry of the calcifying fluid in two coral species using both a pH and dissolved inorganic carbon (DIC) proxy (δ11B and B/Ca, respectively). To address the potential for adaptive responses, both species were collected from two sites spanning a natural gradient in seawater pH and temperature, and then subjected to three pHT levels (8.04, 7.88, 7.71) crossed by two temperatures (control, +1.5°C) for 14 weeks. Corals from the site with naturally lower seawater pH calcified faster and maintained growth better under simulated OA than corals from the higher pH site. This ability was consistently linked to higher pH yet lower DIC values in the calcifying fluid, suggesting that these differences are the result of long-term acclimatization and/or local adaptation to naturally lower seawater pH. Nevertheless, all corals elevated both pH and DIC significantly over seawater values, even under OA. This implies that high pH-upregulation combined with moderate levels of DIC-upregulation promote resistance and adaptive responses of coral calcification to OA.
Supplemental methods and results from Rapid evolution rescues hosts from competition and disease but—despite a dilution effect—increases the density of infected hosts
Creators: name: Strauss, Alexander T.
name: Hite, Jessica L.
name: Shocket, Marta S.
name: Cáceres, Carla E.
name: Duffy, Meghan A.
name: Hall, Spencer R.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology

description: Virulent parasites can depress the densities of their hosts. Taxa that reduce disease via dilution effects might alleviate this burden. However, ‘diluter’ taxa can also depress host densities through competition for shared resources. The combination of disease and interspecific competition could even drive hosts extinct. Then again, genetically variable host populations can evolve in response to both competitors and parasites. Can rapid evolution rescue host density from the harm caused by these ecological enemies? How might such evolution influence dilution effects or the size of epidemics? In a mesocosm experiment with planktonic hosts, we illustrate the joint harm of competition and disease: hosts with constrained evolutionary ability (limited phenotypic variation) suffered greatly from both. However, populations starting with broader phenotypic variation evolved stronger competitive ability during epidemics. In turn, enhanced competitive ability—driven especially by parasites—rescued host densities from the negative impacts of competition, disease, and especially their combination. Interspecific competitors reduced disease (supporting dilution effects) even when hosts rapidly evolved. However, this evolutionary response also elicited a potential problem. Populations that evolved enhanced competitive ability and maintained robust total densities also supported higher densities of infections. Thus, rapid evolution rescued host densities but also unleashed larger epidemics.
Call for papers. CODATA Data Science Journal Special Collection on RDA Outputs. Poster for RDA's 14th plenary
Creators: name: Lazzeri, Emma
name: Pavone, Gina
Publisher: name: Zenodo
Year: 2021
Subjects: RDA, Open Science, Data sharing, CODATA Data Science Journal, cfp

description: The poster supported the call for papers on the CODATA Data Science Journal special collection on research results and outcomes stemming from RDA activities.
Visualización y análisis del discurso en medios sociales
Creators: name: Arroyo-Machado, Wenceslao
name: Barros García, Benamí
Publisher: name: Zenodo
Year: 2020
Subjects: análisis de redes
análisis del discurso
Twitter

description: Presentación para la "1ª Jornada de Investigación en Ciencias Sociales y Humanidades Digitales" de la Universidad de Granada celebrada el 7 de febrero de 2020.
Supplemental Figure 1 from First satellite tracks of South Atlantic sea turtle ‘lost years’: seasonal variation in trans-equatorial movement
Creators: name: Mansfield, Katherine L.
name: Mendilaharsu, Milagros L.
name: Putman, Nathan F.
name: Marcovaldi, Maria A. G. Dei
name: Sacco, Alexander E.
name: Lopez, Gustave
name: Thais Pires
name: Yonat Swimmer
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Ecology
subject: FOS: Biological sciences
subject: 60801 Animal Behaviour

description: Satellite tracks of oceanic stage laboratory-reared loggerhead sea turtles released in the (A) early (yellow), (B) middle (orange), and (C) late (red) hatching season off the coast of Bahia, Brazil in the western South Atlantic.
Statistical analysis and data synthesis
Creators: name: Shabil, Muhammed
Publisher: name: OSF Registries
Year: 2023

description: Statistical Analysis: The primary objective of our statistical analysis will be to determine the pooled prevalence of BLV presence in cattle serum based on the data extracted from the included studies. Meta-Analysis: We will conduct a meta-analysis using the number of BLV positive samples and the total number of samples tested across studies. A random-effects model will be utilized to pool the results, accounting for potential heterogeneity among the studies. Heterogeneity Assessment: The I² statistic and the tau-squared metric will be used to quantify the level of heterogeneity between the studies. I² values range from 0% to 100%, with higher values indicating greater inconsistency among study results. Additionally, a 95% prediction interval will be employed to further highlight the range in which the true effects of future studies will fall, given the observed heterogeneity. Subgroup Analyses: To explore the potential sources of heterogeneity and to assess specific aspects more closely, we will conduct subgroup analyses based on: Testing technique employed for BLV detection. Geographical region or country where the study was conducted. Type of cattle (e.g., dairy cattle). Assessment of Publication Bias: A funnel plot will be constructed to visually assess potential publication biases. If asymmetry is detected in the funnel plot, it may indicate a publication bias. We may also use quantitative methods like Egger's test or Begg's test to statistically test for publication bias. Sensitivity Analysis: A leave-one-out analysis will be conducted to assess the impact of individual studies on the overall pooled estimate. This method involves sequentially removing one study at a time and recalculating the pooled estimate to determine if any single study disproportionately influences the overall result. Significance Testing: A p-value less than 0.05 will be considered as the threshold for statistical significance. Software: All statistical analyses will be performed using the R software, version 4.3, leveraging appropriate packages and libraries for meta-analyses.
Screening
Creators: name: Shabil, Muhammed
Publisher: name: OSF Registries
Year: 2023

description: Screening and Study Selection: Dual Review Process: Two independent reviewers will be assigned the task of screening and selecting articles to ensure accuracy and reduce the potential for bias. Primary Screening: The initial phase of screening will involve reading the title and abstract of identified articles. This step will allow for a quick elimination of articles that are evidently irrelevant to the research question. Full-text Screening: Articles that seem relevant based on their title and abstract will undergo a thorough full-text review. During this phase, the inclusion and exclusion criteria will be strictly adhered to, and only articles that fully meet the criteria will be considered for the final review. Software Utilization: The Nested Knowledge software will be used to aid in the systematic screening of articles. This software will help streamline the process and ensure that no articles are inadvertently overlooked. Resolving Disagreements: In case of discrepancies or disagreements between the two reviewers regarding the eligibility of a particular study, a third independent reviewer will be consulted. A discussion will be initiated to reach a consensus on whether the study should be included or excluded. Documentation: A flow diagram will be created to visually depict the number of articles identified, screened, deemed eligible, and finally included in the review. This will provide a clear and transparent overview of the entire screening process. Reference Tracking: As an additional measure, the references of included studies will be scanned to ensure that no potentially relevant studies are missed during the initial search. This step will help in capturing any significant articles that might not have been identified through the database search.
Inclusion and exclision criertia
Creators: name: Shabil, Muhammed
Publisher: name: OSF Registries
Year: 2023

description: Inclusion Criteria: Type of Studies: Primary studies using any observational design. Subjects of Studies: Studies focused on the prevalence of Bovine Leukemia Virus (BLV) in cattle serum. Type of Data: Studies that reported both the total number of samples tested and the number of samples where BLV presence was identified. Method of Detection: No restriction on the method used for detecting BLV in samples. Geographical Location: Studies from any geographical location were included. Type of Animal: Inclusion of studies involving any type of animal where BLV was detected. Language: Only articles published in English were considered. Exclusion Criteria: Type of Publications: Commentaries, narrative reviews, and conference abstracts were excluded. Incomplete Data: Studies that did not report both the total number of samples and the samples where BLV was detected. Language: Articles not published in English. Unrelated Data: Studies not related to the prevalence of BLV in cattle serum.
Darshan IO trace for ADMIRE_APP4_REMOTE_SENSING
Creators: name: Surbhi Sharma
Publisher: name: Zenodo
Year: 2024

description: This trace was collected as part of the HPC I/O Analysis Initiative, which aims to improve the understanding and optimization of I/O performance in high performance computing. This data set contains the Darshan profiling file and associated metadata for the ADMIRE_APP4_REMOTE_SENSING application, which belongs to the Machine Learning category. It captures the execution of the application with 36 processes completed in 5 hours 24 minutes 4 seconds. This data provides insight into I/O patterns and performance that can be used for optimization efforts in similar computing contexts. For more traces and detailed information, please visit our website at https://hpcioanalysis.zdv.uni-mainz.de .If you use this dataset as part of a publication, please citeNafiseh Moti, André Brinkmann, Marc-André Vef, Philippe Deniel, Jesús Carretero, Philip H. Carns, Jean-Thomas Acquaviva, Reza Salkhordeh: The I/O Trace Initiative: Building a Collaborative I/O Archive to Advance HPC. SC Workshops 2023: 1216-1222in addition to the DOI of this dataset.