cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Topological String on Toric CY3s in Large Complex Structure Limit
Creators: name: Drissi, Lalla Btissam
name: Jehjouh, Houda
name: Saidi, El Hassan
Publisher: name: arXiv
Year: 2008
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We develop a non planar topological vertex formalism and we use it to study the A-model partition function $\mathcal{Z}_{top}$ of topological string on the class of toric Calabi-Yau threefolds (CY3) in large complex structure limit. To that purpose, we first consider the $T^{2}\times R$ special Lagrangian fibration of generic CY3-folds and we give the realization of the class of large $μ$ toric CY3-folds in terms of supersymmetric gauged linear sigma model with \emph{non zero} gauge invariant superpotentials $% \mathcal{W}(Φ) $. Then, we focus on a one complex parameter supersymmetric $U(1) $ gauged model involving six chiral superfields ${Φ_{i}}$ with $\mathcal{W}=μ(\prod\nolimits_{i=0}^{5}Φ_{i}) $ and we use it to compute the function $\mathcal{Z}_{top}$ for the case of the local elliptic curve in the limit $μ\to \infty $.
description: Latex, 38 pages, 12 figures. To appear in Nucl Phys B
Additional file 8 of Genome-wide identification and functional analysis of Dof transcription factor family in Camelina sativa
Creators: name: Luo, Tao
name: Song, Yanan
name: Gao, Huiling
name: Wang, Meng
name: Cui, Hongli
name: Ji, Chunli
name: Wang, Jiping
name: Yuan, Lixia
name: Li, Runzhi
Publisher: name: figshare
Year: 2023
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 8: Table S6. Details of the cis-elements identified in CsDof gene family.
Catheter-Based Transepidural Approach to Cervical and Thoracic Posterior and Perineural Epidural Spaces: A Cadaveric Feasibility Study
Creators: name: Zeenat Qureshi Stroke Institutes
Publisher: name: Zenodo
Year: 2023

description: BACKGROUND AND OBJECTIVES—Approaching the cervical and high thoracic level epidural space through transepidural route from lumbar region represents a method to lower the occurrence of complications associated with direct approach. The authors performed a cadaveric pilot project to determine the feasibility of various catheter-based manipulation and cephalad advancement using the transepidural route. STUDY DESIGN AND METHODS—Two cadavers were used to determine the following: 1. Ability to place a guide sheath over a guidewire using a percutaneous approach within the posterior lumbar epidural space; 2. The highest vertebral level catheter can be advanced within the posterior epidural space; 3. Ability to cross midline within the posterior epidural space; and 4. Ability to catheterize the perineural epidural sheaths of the nerve roots exiting at cervical and thoracic vertebral levels. RESULTS—We were able to advance the catheters up to the level of cervical vertebral level of C2 within the posterior epidural space under fluoroscopic guidance from a sheath inserted via oblique parasagittal approach at the lumbar L4–L5 intervertebral space. We were able to cross midline within the posterior epidural space and catheterize multiple perineural epidural sheaths of the nerve roots exiting at cervical vertebral level of C2, C3, and C4 on ipsilateral or contralateral sides. We also catheterized multiple epidural sheaths that surround the nerve roots exiting at the thoracic vertebral level on ipsilateral or contralateral sides. CONCLUSIONS—We were able to advance a catheter or microcatheter up to the cervical vertebral level within the posterior epidural space and catheterize the perineural epidural sheath of the nerve root exiting at cervical and thoracic vertebral levels. Such observations support further exploration of percutaneous catheter based transepidural approach to cervical and thoracic dorsal epidural spaces for therapeutic interventions.
General Electric Quarterly Survey 77-01, Versions I & II, Prof. & Manag., I & II, College Student
Creators: name: Electric, General
Publisher: name: Roper Center for Public Opinion Research
Year: 2022

description: Most interesting concerns (3); local community interests (1); national issues discussions (5); price controls (1); wage controls (1); race relations (1); companies helping race relations (1); product values (19); electricity fuels (3); future fuels (2); electricity rates (3); need for additional plants (1); government activity changes (24); government helping minorities (5); defense spending (6); company effects (1); maternity benefits (5); income change (1); price changes (1); financial situation (1); unemployment (1).
The Mangosteen: A List of References
Creators: name: Feldkamp, Cora L.
name: Feldkamp, Cora L.
Publisher: name: Unknown
Year: 1946
Subjects: Crop Production/Industries
Food Consumption/Nutrition/Food Safety

description: This bibliography includes references on all aspects of the mangosteen - botany, culture, diseases and pests, varieties, composition, nutritive value, cookery, toxic effects, uses, economics, etc. The arrangement is alphabetical by author. The index, in addition to an analysis of the specific subjects included, lists joint authors and issuing agencies. Items marked, with an asterisk (*) have not been examined. Call numbers following the citations are those of the United States Department of Agriculture Library unless otherwise noted.
Additional file 1 of Motor Imagery to Facilitate Sensorimotor Re-Learning (MOTIFS) after traumatic knee injury: study protocol for an adaptive randomized controlled trial
Creators: name: Cederström, Niklas
name: Granér, Simon
name: Nilsson, Gustav
name: Dahan, Rickard
name: Ageberg, Eva
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional File 1. PRagmatic Explanatory Continuum Indicator Summary (PRECIS-2) Figure evaluating trial pragmatism
Fluctuation dissipation relations in stationary states of interacting Brownian particles under shear
Creators: name: Krüger, Matthias
name: Fuchs, Matthias
Publisher: name: arXiv
Year: 2009
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: The fluctuation dissipation theorem (FDT) is studied close to the glass transition in colloidal suspensions under steady shear. Shear breaks detailed balance in the many-particle Smoluchowski equation, and gives response functions in the stationary state which are smaller at long times than estimated from the equilibrium FDT. During the final shear-driven decay, an asymptotically constant relation connects response and fluctuations, restoring the form of the FDT with, however, a ratio different from the equilibrium one.
description: accepted to Phys. Rev. Lett.
A submillimetre survey of the kinematics of the Perseus molecular cloud: I. data
Creators: name: Curtis, Emily I.
name: Richer, John S.
name: Buckle, Jane V.
Publisher: name: arXiv
Year: 2009
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We present submillimetre observations of the J = 3-2 rotational transition of 12CO, 13CO and C18O across over 600 sq arcmin of the Perseus molecular cloud, undertaken with HARP, a new array spectrograph on the James Clerk Maxwell Telescope. The data encompass four regions of the cloud, containing the largest clusters of dust continuum condensations: NGC 1333, IC348, L1448 and L1455. A new procedure to remove striping artefacts from the raw HARP data is introduced. We compare the maps to those of the dust continuum emission mapped with SCUBA (Hatchell et al. 2005) and the positions of starless and protostellar cores (Hatchell et al. 2007a). No straightforward correlation is found between the masses of each region derived from the HARP CO and SCUBA data, underlining the care that must be exercised when comparing masses of the same object derived from different tracers. From the 13CO/C18O line ratio the relative abundance of the two species ([13CO]/[C18O] ~ 7) and their opacities (typically tau is 0.02-0.22 and 0.15-1.52 for the C18O and 13CO gas respectively) are calculated. C18O is optically thin nearly everywhere, increasing in opacity towards star-forming cores but not beyond tau(C18O)~0.9. Assuming the 12CO gas is optically thick we compute its excitation temperature (around 8-30 K), which has little correlation with estimates of the dust temperature.
description: 20 pages, 15 figures, accepted for publication by MNRAS
Marine ecosystem monitoring: a new deep learning application for reef mapping based on a citizen science framework
Creators: name: Justine, Talpaert
name: Matteo, Contini
name: Sylvain, Bonhommeau
name: Julien, Barde
name: Chevrier Thomas
name: Alexis, Joly
Publisher: name: Zenodo
Year: 2022
Subjects: Deep learning
marine ecology
species recognition
computer vision
participative science

description: Poster created for the symposium of WIOMSA 2022 (Western Indian Ocean Marine Science Association). It depicts the collaboration between Seatizen project (Ifremer) and G2OI project (IRD) to automate the production of marine species distribution maps using citizen science for data acquisition and deep learning for species recognition.    
Additional file 12 of The skeletome of the red coral Corallium rubrum indicates an independent evolution of biomineralization process in octocorals
Creators: name: Roy, Nathalie Le
name: Ganot, Philippe
name: Aranda, Manuel
name: Allemand, Denis
name: Tambutté, Sylvie
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 12: Galaxin-like proteins. The published protein sequences for galaxin homologs from Acropora millepora, Galaxea fascicularis, Stylophora pistillata and Euprymna scolopes [16, 48, 96–98], as well as the present Corallium rubrum CR_14 and CR_27 were submitted to the MEME discovery motif and the MAST motif scanning programs ( http://meme-suite.org/ ). The motifs is a double di-cysteine motif similar to galaxin motif found by Reyes-Bermundez and colleagues [48], and is shown as logo on top. On the listed fasta sequences, this double di-cysteine motif, or galaxin motif, is highlighted in yellow in each sequence. The signal peptide sequence ( http://www.cbs.dtu.dk/services/SignalP-5.0/ ) is in italic and underlined.
Sensitivity of gargle samples compared to swabs for SARS-CoV-2 detection with nucleic acid amplification testing : a systematic review and meta-analysis
Creators: name: Kayda, Iryna
Publisher: name: University of British Columbia
Year: 2023

description: Background: Challenges arose with diagnostic testing during the coronavirus disease 2019 (COVID-19) pandemic. Gargle sampling emerged as a novel method for COVID-19 testing, yet there remains uncertainty about its performance when compared with more conventional sampling methods. Objective: We investigated the performance of self-collected gargle samples compared to traditional healthcare worker (HCW)-collected upper respiratory tract swabs for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) detection with nucleic acid amplification testing (NAAT). We aimed to (1) estimate sensitivity of gargle sampling, (2) estimate the difference in sensitivity between gargle and swab methods, and (3) understand how various testing contexts may impact gargle sensitivity. Methods: MEDLINE, EMBASE, Web of Science, Global Index Medicus, and preprint servers were searched. Studies reporting primary data and investigating COVID-19 diagnostic performance of self-collected gargle samples compared to a HCW-collected swab, with at least five matched samples tested using NAAT, were included. Random effects meta-analysis was conducted to estimate both the pooled gargle sensitivity and mean difference in sensitivity between gargle and swab methods. Subgroup analyses were also performed to assess the potential impact of different sampling variables. Results: Searches identified 327 results with 24 studies included in the review. 28 gargle-swab comparisons were pooled in meta-analysis. Gargle sensitivity was estimated to be 92.7% (95% confidence interval: 89.9% to 94.8%) and 3.2% (0.4% to 6.0%) less sensitive than swab collection. Gargle sensitivity was greater than 87.0% across diverse patient characteristics, settings, type or volume of gargle liquid, length of gargling time, wait time prior to gargling, and reference swab type or NAAT method used. Greatest sensitivities were observed when gargle sampling for 30 seconds or greater using 5-9 mL of saline. 92.9% (86.9% to 96.2%) gargle sensitivity was observed when there was no required wait time, and sensitivity was 90.4% (87.0% to 93.0%), even when compared to high quality combined nasopharyngeal and oropharyngeal (NPOP) swabs. Conclusion: Gargle sampling is a sensitive, non-inferior method for SARS-CoV-2 detection across various testing contexts. Implementation of gargle sampling has potential to significantly reduce barriers associated with HCW-collected swabs and would facilitate testing and genomic surveillance for SARS-CoV-2 across diverse settings.
Mabouia cyanea Gray
Creators: name: Müller, F
Publisher: name: Zenodo
Year: 1885
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Squamata
Sauria
Scincidae
Mabouia

description: Mabouia cyanea Gray liz. ang.
Nord-Irland v. F M. [2]
description: Published as part of Müller, F, 1885, Vierter Nachtrag zum Katalogder herpetologischen Sammlung des Basler Museums, pp. 668-717 in Verhandlungen der Naturforschenden Gesellschaft in Basel. 7 (3) on page 704, DOI: 10.5962/bhl.part.2388, http://zenodo.org/record/15183591
A first-order DirAC-based parametric Ambisonic coder for immersive communications
Creators: name: Fuchs, Guillaume
name: Ghido, Florin
name: Weckbecker, Dominik
name: Thiergart, Oliver
Publisher: name: arXiv
Year: 2025
Subjects: subject: Audio and Speech Processing (eess.AS)
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: Directional Audio Coding (DirAC) is a proven method for parametrically representing a 3D audio scene in B-format and is capable of reproducing it on arbitrary loudspeaker layouts. Although such a method seems well suited for low bitrate Ambisonic transmission, little work has been done on the feasibility of building a real system upon it. In this paper, we present a DirAC-based coding for Higher-Order Ambisonics (HOA), developed as part of a standardisation effort to extend the 3GPP EVS codec to immersive communications. Starting from the first-order DirAC model, we show how to reduce algorithmic delay, the bitrate required for the parameters and complexity by bringing the full synthesis in the spherical harmonic domain. The evaluation of the proposed technique for coding 3\textsuperscript{rd} order Ambisonics at bitrates from 32 to 128 kbps shows the relevance of the parametric approach compared with existing solutions.
description: Accepted at ICASSP'25
Additional file 2 of Motor Imagery to Facilitate Sensorimotor Re-Learning (MOTIFS) after traumatic knee injury: study protocol for an adaptive randomized controlled trial
Creators: name: Cederström, Niklas
name: Granér, Simon
name: Nilsson, Gustav
name: Dahan, Rickard
name: Ageberg, Eva
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional File 2. Spirit Checklist - Completed checklist identifying fulfillment of SPIRIT guideline requirements
Charm cross-section and charmonium(like) states in e+e- annihilation with Belle
Creators: name: Uglov, T.
Publisher: name: arXiv
Year: 2009
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: We report BELLE measurements of the exclusive cross sections for the processes e+e-->DD*, e+e-->DD, e+e-->DDpi, the first observation of psi(4415)-> DD*2(2460)bar decay and new state, Y(4660), using ISR. In addition, another cluster of events at around 4.05GeV/c2 is reported.
description: 4 pages, 4 figures
Capture, mutual inhibition and release mechanism for aPKC-Par6 and its multisite polarity substrate Lgl.
Creators: name: Earl, Christopher P
name: Cobbaut, Mathias
name: Barros-Carvalho, André
name: Ivanova, Marina E
name: Briggs, David C
name: Morais-de-Sá, Eurico
name: Parker, Peter J
name: McDonald, Neil Q
Publisher: name: The Francis Crick Institute
Year: 2025
Subjects: classificationCode: Biochemistry & Proteomics
subject: Biochemistry & Proteomics
classificationCode: Structural Biology & Biophysics
subject: Structural Biology & Biophysics
classificationCode: Model organisms
subject: Model organisms

description: The mutually antagonistic relationship of atypical protein kinase C (aPKC) and partitioning-defective protein 6 (Par6) with the substrate lethal (2) giant larvae (Lgl) is essential for regulating polarity across many cell types. Although aPKC-Par6 phosphorylates Lgl at three serine sites to exclude it from the apical domain, aPKC-Par6 and Lgl paradoxically form a stable kinase-substrate complex, with conflicting roles proposed for Par6. We report the structure of human aPKCι-Par6α bound to full-length Llgl1, captured through an aPKCι docking site and a Par6PDZ contact. This complex traps a phospho-S663 Llgl1 intermediate bridging between aPKC and Par6, impeding phosphorylation progression. Thus, aPKCι is effectively inhibited by Llgl1pS663 while Llgl1 is captured by aPKCι-Par6. Mutational disruption of the Lgl-aPKC interaction impedes complex assembly and Lgl phosphorylation, whereas disrupting the Lgl-Par6PDZ contact promotes complex dissociation and Lgl phosphorylation. We demonstrate a Par6PDZ-regulated substrate capture-and-release model requiring binding by active Cdc42 and the apical partner Crumbs to drive complex disassembly. Our results suggest a mechanism for mutual regulation and spatial control of aPKC-Par6 and Lgl activities.
The enormous outer Galaxy HII region CTB 102
Creators: name: Arvidsson, K.
name: Kerton, C. R.
name: Foster, T.
Publisher: name: arXiv
Year: 2009
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We present new radio recombination line observations of the previously unstudied HII region CTB 102. Line parameters are extracted and physical parameters describing the gas are calculated. We estimate the distance to CTB 102 to be 4.3 kpc. Through comparisons with HI and 1.42 GHz radio continuum data, we estimate the size of CTB 102 to be 100-130 pc, making it one of the largest HII regions known, comparable to the W4 complex. A stellar wind blown bubble model is presented as the best explanation for the observed morphology, size and velocities.
description: 26 pages, 8 figures. Accepted for publication by The Astrophysical Journal
Additional file 3 of Motor Imagery to Facilitate Sensorimotor Re-Learning (MOTIFS) after traumatic knee injury: study protocol for an adaptive randomized controlled trial
Creators: name: Cederström, Niklas
name: Granér, Simon
name: Nilsson, Gustav
name: Dahan, Rickard
name: Ageberg, Eva
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional File 3.Informed Consent Materials; Informed consent sheet supplied to participants (translated from Swedish to English by the first author; original Swedish version available upon request)
Information embedding meets distributed control
Creators: name: Grover, Pulkit
name: Wagner, Aaron B.
name: Sahai, Anant
Publisher: name: arXiv
Year: 2010
Subjects: subject: Information Theory (cs.IT)
subject: FOS: Computer and information sciences

description: We consider the problem of information embedding where the encoder modifies a white Gaussian host signal in a power-constrained manner to encode the message, and the decoder recovers both the embedded message and the modified host signal. This extends the recent work of Sumszyk and Steinberg to the continuous-alphabet Gaussian setting. We show that a dirty-paper-coding based strategy achieves the optimal rate for perfect recovery of the modified host and the message. We also provide bounds for the extension wherein the modified host signal is recovered only to within a specified distortion. When specialized to the zero-rate case, our results provide the tightest known lower bounds on the asymptotic costs for the vector version of a famous open problem in distributed control -- the Witsenhausen counterexample. Using this bound, we characterize the asymptotically optimal costs for the vector Witsenhausen problem numerically to within a factor of 1.3 for all problem parameters, improving on the earlier best known bound of 2.
description: 19 pages, 7 figures. Presented at ITW'10. Submitted to IEEE Transactions on Information Theory
The relationship between Hirsch-Fye and weak coupling diagrammatic Quantum Monte Carlo methods
Creators: name: Mikelsons, Karlis
name: Macridin, Alexandru
name: Jarrell, Mark
Publisher: name: arXiv
Year: 2009
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Two weak coupling Continuous Time Quantum Monte Carlo (CTQMC) methods are shown to be equivalent for Hubbard-like interactions. A relation between these CTQMC methods and the Hirsch-Fye Quantum Monte Carlo (HFQMC) method is established, identifying the latter as an approximation within CTQMC and providing a diagrammatic interpretation. Both HFQMC and CTQMC are shown to be equivalent when the number of time slices in HFQMC becomes infinite, implying the same degree of fermion sign problem in this limit.
description: Submitted to PRE
Additional file 4 of The skeletome of the red coral Corallium rubrum indicates an independent evolution of biomineralization process in octocorals
Creators: name: Roy, Nathalie Le
name: Ganot, Philippe
name: Aranda, Manuel
name: Allemand, Denis
name: Tambutté, Sylvie
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 4: Relative estimation of the proportion of sclerites into the axial skeleton using 7 published axial skeleton cross-sections [7, 33]. a: annular part; m: medullar part. Medullar and annular areas were drawn by hand after the published pictures with Photoshop®. The resulting png files were analyzed using ImageJ. The relative calculated areas are shown in the table.
Additional file 4 of Motor Imagery to Facilitate Sensorimotor Re-Learning (MOTIFS) after traumatic knee injury: study protocol for an adaptive randomized controlled trial
Creators: name: Cederström, Niklas
name: Granér, Simon
name: Nilsson, Gustav
name: Dahan, Rickard
name: Ageberg, Eva
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional File 4: Appendix 1 - Detailed description of Care-as-Usual and PETTLEP training, and practical use of the MOTIFS model
Electromagnetically Induced Transparency versus Nonlinear Faraday Effect. Coherent Control of the Light Beam Polarization
Creators: name: Drampyan, R.
name: Pustelny, S.
name: Gawlik, W.
Publisher: name: arXiv
Year: 2009
Subjects: subject: Optics (physics.optics)
subject: Atomic Physics (physics.atom-ph)
subject: FOS: Physical sciences

description: We report on experimental and theoretical study of the nonlinear Faraday effect under conditions of electromagnetically induced transparency at the 5$S_{1/2} \to 5P_{3/2} \to 5D_{5/2}$ two-photon transition in rubidium vapors. These transitions realize the inverted Y model which combines the $Λ$ and ladder systems. Strong nonlinearity allowing for large rotation angles of a probe beam tuned to the $S\to P$ transition was obtained by creation of quantum superpositions of magnetic sublevels (Zeeman coherences) in the rubidium ground state ($Λ$ scheme). Additionally, electromagnetically induced transparency was accomplished in a ladder scheme by acting with an additional strong coupling laser on the $P\to D$ transition. Under conditions of a two-photon resonance the rotation was significantly reduced, which is interpreted as a competition between the two processes. The effect was observed in sub-Gauss magnetic fields and could be used for efficient coherent control of generation of the ground-state coherences, e.g. for controlling the polarization state of the probe light.
description: 7 pages, 12 figures, submitted to Phys. Rev. A
Additional file 5 of Genome-wide identification and functional analysis of Dof transcription factor family in Camelina sativa
Creators: name: Luo, Tao
name: Song, Yanan
name: Gao, Huiling
name: Wang, Meng
name: Cui, Hongli
name: Ji, Chunli
name: Wang, Jiping
name: Yuan, Lixia
name: Li, Runzhi
Publisher: name: figshare
Year: 2023
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 5: Table S3. All gene pairs of C. sativa and A. thaliana.
grmonty: a Monte Carlo Code for Relativistic Radiative Transport
Creators: name: Dolence, Joshua C.
name: Gammie, Charles F.
name: Moscibrodzka, Monika
name: Leung, Po Kin
Publisher: name: arXiv
Year: 2009
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: We describe a Monte Carlo radiative transport code intended for calculating spectra of hot, optically thin plasmas in full general relativity. The version we describe here is designed to model hot accretion flows in the Kerr metric and therefore incorporates synchrotron emission and absorption, and Compton scattering. The code can be readily generalized, however, to account for other radiative processes and an arbitrary spacetime. We describe a suite of test problems, and demonstrate the expected $N^{-1/2}$ convergence rate, where $N$ is the number of Monte Carlo samples. Finally we illustrate the capabilities of the code with a model calculation, a spectrum of the slowly accreting black hole Sgr A* based on data provided by a numerical general relativistic MHD model of the accreting plasma.
description: 38 pages, 17 figures, accepted to ApJS
An evaluation of bulk ore sorting potential in a copper-gold panel cave mine
Creators: name: Cetin, Mahir Can
Publisher: name: University of British Columbia
Year: 2023

description: Block and panel caving are underground mining methods that allow for extracting relatively low-grade and deeply situated orebodies. Caving differs from other underground mining methods and open pit mining regarding the lack of grade selectivity, which results in both ore and waste reporting to the mill, thereby increasing energy and water consumption and processing waste generation. Bulk ore sorting is a preconcentration method that uses sensors measuring grade directly or indirectly to identify and discard waste material before milling. Bulk ore sorting is proposed as a remedy for the lack of selectivity associated with cave mining; however, the potential to implement the method depends on various geological, operational, technical, and financial factors. The primary goal of this research is to comprehensively evaluate the bulk ore sorting potential in the Cadia East copper-gold panel cave mine using a methodology developed to be applicable for similar caving operations extracting copper porphyry deposits. The developed methodology includes a script package that can perform automated and fast bulk ore sorting assessments. The script package mainly requires ore grades measured at various locations of a cave mine and extraction level layouts. As part of the evaluation, the heterogeneities and bulk ore sorting potentials of the individual panel caves of the mine were estimated for the ideal case. The impacts of sorting cut-off grade and metal price on the ideal sorting performances of the panel caves were determined. A reconciliation study revealed that the mixing during the handling of the ore underground reduced the grade variability more severely than the mixing within the cave, and the opportunity to preconcentrate the ore at the surface was almost entirely lost due to mixing events. The cave footprints were analyzed spatially to locate the orebody portions that might be subjected to bulk ore sorting using sensors on production loaders on the extraction level. Lab-scale tests were performed to determine the grade measurement capability of bucket-mounted X-ray fluorescence sensors that could be used for bulk ore sorting or grade monitoring underground. The sensor tests produced promising results, particularly in determining the copper grades of the samples obtained from the mine.
Sharing (Linked) Open Data with domain-specific data-driven community hubs on the example of the German National Research Data Infrastructure (NFDI) consortium NFDI4Objects and the data hub archaeology.link
Creators: name: Thiery, Florian
name: Mees, Allard
Publisher: name: Squirrel Papers, via Zenodo
Year: 2023

description: Talk at the ARCHAEO.FOSS XVII | 2023, Panel 1.
Additional file 7 of The skeletome of the red coral Corallium rubrum indicates an independent evolution of biomineralization process in octocorals
Creators: name: Roy, Nathalie Le
name: Ganot, Philippe
name: Aranda, Manuel
name: Allemand, Denis
name: Tambutté, Sylvie
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 7: Multiple sequence alignment of the 10 collagen-like proteins identified in the proteome of the C. rubrum biominerals. Multiple alignment was carried out using Multalin ( http://multalin.toulouse.inra.fr/multalin/multalin.html ) and edited using JalView. Note the G-X–Y triplet repeats (glycine in blue, proline in red) characteristic of collagens.
Additional file 8 of The skeletome of the red coral Corallium rubrum indicates an independent evolution of biomineralization process in octocorals
Creators: name: Roy, Nathalie Le
name: Ganot, Philippe
name: Aranda, Manuel
name: Allemand, Denis
name: Tambutté, Sylvie
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 8: Wrongly assigned collagen sequences in C. rubrum (top) and S. pistillata (bottom). Both in our analysis and in Drake and coworkers [18], the C. rubrum CR_98 and the S. pistillata XP_022783415 (P14) and AGG36343 (P18) sequences were wrongly assigned as “collagen”, probably because they are containing a von Willebrand factor type A domain (vWA) very homologous to another vWA domain sequence from another organism, which is there associated to a collagen protein sequence. Hence, by transitivity, the coral sequences were automatically annotated as “collagen”, although not being a collagen. Likewise, the C. rubrum CR_6 was also automatically annotated as “collagen”, as it contains a ColF1 domain. However, since the rest of the sequence is fibrinogen-related and does not contain G-X-Y triplets, CR_6 is assigned as “fibrillar collagen”, but not considered in the set of the collagens. COLFI: fibrillar collagen C-terminal domain; FA58C: coagulation factor 5/8 C-terminal domain; FBG: fibrinogen-related domain; TSP1: thrombonspondin-1.
On Fenchel-Nielsen coordinates on Teichmüller spaces of surfaces of infinite type
Creators: name: Alessandrini, Daniele
name: Liu, Lixin
name: Papadopoulos, Athanase
name: Su, Weixu
name: Sun, Zongliang
Publisher: name: arXiv
Year: 2010
Subjects: subject: Geometric Topology (math.GT)
subject: FOS: Mathematics
subject: 32G15, 30F30, 30F60

description: We introduce Fenchel-Nielsen coordinates on Teicmüller spaces of surfaces of infinite type. The definition is relative to a given pair of pants decomposition of the surface. We start by establishing conditions under which any pair of pants decomposition on a hyperbolic surface of infinite type can be turned into a geometric decomposition, that is, a decomposition into hyperbolic pairs of pants. This is expressed in terms of a condition we introduce and which we call Nielsen convexity. This condition is related to Nielsen cores of Fuchsian groups. We use this to define the Fenchel-Nielsen Teichmüller space associated to a geometric pair of pants decomposition. We study a metric on such a Teichmüller space, and we compare it to the quasiconformal Teichmüller space, equipped with the Teichmüller metric. We study conditions under which there is an equality between these Teichmüller spaces and we study topological and metric properties of the identity map when this map exists.
Additional file 5 of The skeletome of the red coral Corallium rubrum indicates an independent evolution of biomineralization process in octocorals
Creators: name: Roy, Nathalie Le
name: Ganot, Philippe
name: Aranda, Manuel
name: Allemand, Denis
name: Tambutté, Sylvie
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 5: Venn diagram distribution of the 102 identified proteins using 1 unique peptide threshold, in the IOM and SOM of the axial skeleton and the sclerites of C. rubrum.
Additional file 7 of Genome-wide identification and functional analysis of Dof transcription factor family in Camelina sativa
Creators: name: Luo, Tao
name: Song, Yanan
name: Gao, Huiling
name: Wang, Meng
name: Cui, Hongli
name: Ji, Chunli
name: Wang, Jiping
name: Yuan, Lixia
name: Li, Runzhi
Publisher: name: figshare
Year: 2023
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 7: Table S5. All gene pairs of C. sativa and B. napus.
Efimov effect from functional renormalization
Creators: name: Moroz, S.
name: Floerchinger, S.
name: Schmidt, R.
name: Wetterich, C.
Publisher: name: arXiv
Year: 2008
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We apply a field-theoretic functional renormalization group technique to the few-body (vacuum) physics of non-relativistic atoms near a Feshbach resonance. Three systems are considered: one-component bosons with U(1) symmetry, two-component fermions with U(1)\times SU(2) symmetry and three-component fermions with U(1) \times SU(3) symmetry. We focus on the scale invariant unitarity limit for infinite scattering length. The exact solution for the two-body sector is consistent with the unitary fixed point behavior for all considered systems. Nevertheless, the numerical three-body solution in the s-wave sector develops a limit cycle scaling in case of U(1) bosons and SU(3) fermions. The Efimov parameter for the one-component bosons and the three-component fermions is found to be approximately s=1.006, consistent with the result of Efimov.
description: 21 pages, 6 figures, minor changes, published version
Additional file 1 of In silico molecular and morphological analysis of rice blast resistant gene Pi-ta in Sri Lankan rice germplasm
Creators: name: Terensan, Suvanthini
name: Fernando, H. Nishadi S.
name: Silva, J. Nilanthi
name: Perera, S. A. Chandrika N.
name: Kottearachchi, Nisha S.
name: Weerasena, O. V. D. S. Jagathpriya
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Supplementary figure 1. The presence of resistant wPi-ta allele using the specific marker YL155/YL87. L: 100bp ladder, Lane 1: Positive control (Tetep), Lane 2: Negative control, Lane 3: Bg 360, Lane 4: At 362, Lane 5: Attakari,, Lane 6: Moddaikaruppan, Lane 7: Bg 358, Lane 8: Suwandal, Lane 9: Bw 372, Lane 10: Bg 406, Lane 11: Pachchaiperumal, Lane 12: At 308, Lane 13: Bg 300, Lane 14: At 402, Lane 15: Karuthaheenati, Lane 16: Ld 365, Lane 17: Bg 366, Lane 18: Bg 94-1, Lane 19: Bg 251, Lane 20: Co10, Lane 21: Bg 369, Lane 22: Bw 351, Lane 23: Bg 352, Lane 24: Bg 250, Lane 25: Bw 367, Lane 26: At 353, Lane 27: Bg 450
Additional file 2 of In silico molecular and morphological analysis of rice blast resistant gene Pi-ta in Sri Lankan rice germplasm
Creators: name: Terensan, Suvanthini
name: Fernando, H. Nishadi S.
name: Silva, J. Nilanthi
name: Perera, S. A. Chandrika N.
name: Kottearachchi, Nisha S.
name: Weerasena, O. V. D. S. Jagathpriya
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Supplementary table 1. The presence of mutation in the exon 1 of Pi-ta gene in 47 Sri Lankan rice accessions
Additional file 6 of The skeletome of the red coral Corallium rubrum indicates an independent evolution of biomineralization process in octocorals
Creators: name: Roy, Nathalie Le
name: Ganot, Philippe
name: Aranda, Manuel
name: Allemand, Denis
name: Tambutté, Sylvie
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 6: List of the 10 most abundant proteins in each C. rubrum sample. a. Table of the 10 most abundant proteins in each OM biomineral fraction according to their exponentially modified protein abundance index (emPAI) value. Proteins highlighted in grey are in the top 10 of each sample, proteins highlighted in red are in the top 10 of SOM and IOM of the axial skeleton and proteins highlighted in blue are in the top 10 of SOM and IOM of the sclerites. b. Relative abundance in weighted spectra of the ten most abundant proteins in the red coral biominerals. SOMax: Soluble Organic Matrix of the axial skeleton (dark blue bars), IOMax: Insoluble Organic Matrix of the axial skeleton (blue bars), SOMsc: Soluble Organic Matrix of the sclerites (yellow bars), IOMsc: Insoluble Organic Matrix of the sclerites (red bars).
Deformation of doubly-clamped single-walled carbon nanotubes in an electrostatic field
Creators: name: Wang, Zhao
name: Philippe, Laetitia
Publisher: name: arXiv
Year: 2009
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: In this letter, we demonstrate a strong dependence of the electrostatic deformation of doubly-clamped single-walled carbon nanotubes on both the field strength and the tube length, using molecular simulations. Metallic nanotubes are found to be more sensitive to an electric field than semiconducting ones of the same size. For a given electric field, the induced deformation increases with tube length but decreases with tube radius. Furthermore, it is found that nanotubes can be more efficiently bent in a center-oriented transverse electric field.
description: 5 Figures
Cacao: A Bibliography on the Plant and Its Culture and Primary Processing of the Bean
Creators: name: Watrous, Roberta C.
name: Watrous, Roberta C.
Publisher: name: Unknown
Year: 1950
Subjects: Crop Production/Industries
Research and Development/Tech Change/Emerging Technologies

description: Excerpts from the Preface: The demand for cacao products has greatly increased during the twentieth century. At the same time diseases and pests have threatened one after another of the cacao-producing areas of the world. It has therefore become essential to reexamine every factor which might have a bearing on the problem of maintaining and increasing production, whether by improvement of methods, by seeking remedies for specific ills, or by finding areas suitable for new plantings. In addition to experiments and research conducted by governmental and private agencies in the various cacao-growing countries, broad programs of research under cooperative sponsorship were undertaken as early as 1930 at the Imperial College of Tropical Agriculture, Trinidad, and more recently at the West African Cacao Research Institute, Tafo, Gold Coast, and the Inter-American Institute of Agricultural Sciences, Turrialba, Costa Rica. This bibliography is intended to serve students, research workers, and others concerned with the problems involved in growing healthy and productive cacao trees and in processing the beans to meet the standards set by manufacturers of cocoa and chocolate. It includes, in addition to general material on the culture of cacao in various parts of the world and certain special aspects of culture, references on the botany and pathology of the plant, its insect and other enemies, and both practical and scientific aspects of the primary processing of the cacao bean.
Effects of ferromagnetic fluctuations on the electric and thermal transport properties in NaxCoO2
Creators: name: Yanagi, Y.
name: Ōno, Y.
Publisher: name: arXiv
Year: 2009
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We investigate the electronic states and the transport properties of the CoO2 plane in NaxCoO2 on the basis of the two-dimensional triangular lattice 11-band d-p model by using the fluctuation exchange approximation, where we consider the Coulomb interaction between the t2g electrons on a Co site. It is found that all of the effective mass of quasiparticles, the resistivity, the thermoelectric power and the uniform spin susceptibility increase with increasing x for x > 0.6. This implies that the ferromagnetic fluctuations play significant roles on determining the electronic states. These results are qualitatively consistent with the experiments.
description: 4 pages, 3 figures, submitted to Proceedings of ICM 2009 (Karlsruhe)
Additional file 9 of The skeletome of the red coral Corallium rubrum indicates an independent evolution of biomineralization process in octocorals
Creators: name: Roy, Nathalie Le
name: Ganot, Philippe
name: Aranda, Manuel
name: Allemand, Denis
name: Tambutté, Sylvie
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 9: CR_22 as a gene horizontally transferred from unicellular organisms. a. Results of the BLAST search in the different taxa in NCBI database (Porifera, Placozoa, Cnidaria/Octocorallia, Cnidaria/Hexacorallia, Cnidaria/Hydrozoa, Protostomia, Deuterostomia and Bacteria). b. Multiple alignment of CR_22 with its 2 octocorallian homologs (HeCoe: Heliopora coerulea; DeGig: Dendronephthya gigantea) and 2 prokaryotes (MyXan: Myxococcus xanthus; AcXin: Actinoplanes xinjiangensis). The two carbohydrate-binding domains CBM25 (Pfam) of CR_22 are framed in red box. c. Genomic exon (green squares)/intron (dashed blue lines) structure of the CR_22 and DeGig_CBM25 gene coding sequences. Numbers correspond to the introns’ sizes in base pair. d. Phylogenetic tree (PhyML) of CR_22 homologs and proteins corresponding to first BLAST hit from a.