cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Malthinus (Malthinus) persicus Pic 1901
Creators: name: Fanti, Fabrizio
name: Ghahari, Hassan
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cantharidae
Malthinus
Malthinus persicus

description: Malthinus (Malthinus) persicus Pic, 1901
Distribution in Iran. Guilan (Pic 1901; Wittmer 1972): Assalem, between Hashtpar and Heroabad, 1,300 m (Wittmer 1972). Generic records: Iran (Jacobson 1911 [Persia]; Hicker 1925 [Persia]; Delkeskamp 1939 [Persia], 1977 [Persia]; Kazantsev & Brancucci 2007).
Remarks. Endemic to Iran.
description: Published as part of Fanti, Fabrizio & Ghahari, Hassan, 2016, A checklist of the soldier beetles (Coleoptera: Elateroidea: Cantharidae) of Iran, pp. 529-551 in Zootaxa 4196 (4) on page 544, DOI: 10.11646/zootaxa.4196.4.4, http://zenodo.org/record/168319
Malthinus (Malthinus) pseudopersicus Wittmer 1972
Creators: name: Fanti, Fabrizio
name: Ghahari, Hassan
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cantharidae
Malthinus
Malthinus pseudopersicus

description: Malthinus (Malthinus) pseudopersicus Wittmer, 1972
Distribution in Iran. Mazandaran: Shahsavar at Chalus (Wittmer 1972). Generic records: Iran (Delkeskamp 1977; Kazantsev & Brancucci 2007).
Remarks. Endemic to Iran.
description: Published as part of Fanti, Fabrizio & Ghahari, Hassan, 2016, A checklist of the soldier beetles (Coleoptera: Elateroidea: Cantharidae) of Iran, pp. 529-551 in Zootaxa 4196 (4) on page 544, DOI: 10.11646/zootaxa.4196.4.4, http://zenodo.org/record/168319
D5.1 - Pilot Implementation methodology and release of  evaluation guidelines (a)
Creators: name: Natali, Stefano
Publisher: name: Zenodo
Year: 2023
Subjects: EO4EU
EarthObservation
pilot

description: In this document, each of the seven use cases is analysed in detail to identify their data management needs, software component needs, and computational needs. Additionally, a summary of the deployment plan for each use case is presented, to consolidate it at a later stage against the data and processing infrastructure provider for technical alignment. These two chapters, namely the deployment plan and technical alignment, will be briefly described in this document, with more details to be provided in version B at a later stage.
Canariella Hesse 1918
Creators: name: Ibáñez, Miguel
name: Siverio, Felipe
name: Alonso, María R.
name: Ponte-Lira, Carmen E.
Publisher: name: Zenodo
Year: 2006
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Stylommatophora
Hygromiidae
Canariella

description: Genus Canariella Hesse, 1918
Type species: Carocolla hispidula Lamarck, 1822 (designation by monotypy: Hesse 1918: 106–107)
description: Published as part of Ibáñez, Miguel, Siverio, Felipe, Alonso, María R. & Ponte-Lira, Carmen E., 2006, Two Canariella species (Gastropoda: Helicodea: Hygromiidae) endemic to the Northwest Tenerife (Canary Islands), pp. 33-45 in Zootaxa 1258 on page 36, DOI: 10.5281/zenodo.173127
Canariella pontelirae Hutterer 1994
Creators: name: Ibáñez, Miguel
name: Siverio, Felipe
name: Alonso, María R.
name: Ponte-Lira, Carmen E.
Publisher: name: Zenodo
Year: 2006
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Stylommatophora
Hygromiidae
Canariella
Canariella pontelirae

description: Canariella pontelirae Hutterer, 1994
Type locality. Roadcut in the Urbanización Los Gigantes, Tenerife (Fig. 1, empty square; UTM coordinates: 28 RCS 1925, 150 m altitude).
Holotype. SMF (309931); leg. R. Hutterer, 22­02­1989.
Paratypes. 3 shells and 3 shell fragments leg. between 1988 and 1993 in the type locality. TFMC (1 paratype), AIT (1 paratype) and CHB (4 paratypes, 1 shell and 3 shell fragments).
This species was described by Hutterer (1994) as possibly being extinct, from a slope deposit exposed at that time by a fresh road cut in the mountain slopes south of the cliff named Acantilado de Los Gigantes (south of the Teno massif). The species was subsequently assigned to the subgenus Gara Alonso & Ibáñez, 2002 due to the resemblance in shape and ornamentation of the shell with that of the two other Gara species (Ibáñez et al. 2002), C. ronceroi Ponte­Lira, 2002, from La Gomera, and C. bimbachensis Ibáñez & Alonso, 2002, from El Hierro (Table 1).
Living specimens of C. pontelirae (Fig. 4A) were recently found on La Punta, a small, dry open area in northwest Teno, near the lighthouse. It has a xeric type of vegetation community named “cardonal­tabaibal” and located over fallen rock, with Euphorbia canariensis Linnaeus, 1753, E. balsamifera Aiton, 1789 and E. lamarckii Sweet, 1818 as the predominant species, and also the aloctonous Opuntia dillenii (Ker Gawler) Hawort, 1819, at about 50–300 m altitude. The snails were collected from between the roots of Asphodelus ramosus distalis Z. Díaz & Valdés, 1996, Drimia maritima (Linnaeus) Stearn, 1978, Hyparrhenia hirta (Linnaeus) Stapf in Prain, 1919 and Cenchrus ciliaris Linnaeus, 1771.
Unfortunately, the genital systems of the six specimens dissected were seemingly not fully developed because the penis was undifferentiated from the epiphallus, and the epiphallar folds reached the atrium (Fig. 6 A). The general shape of the genital system is similar to those of C. ronceroi, and C. bimbachensis, supporting its conchological assignment to the subgenus Gara, despite the uncertainty about its mature penial anatomy. The genital system of C. pontelirae differs from that of both species by two known character­states: firstly the slender flagellum is very long, about 6–8 times longer than that of the other two species, in which it is less than 1 mm, and secondly the presence of two vaginal glands rather than one.
description: Published as part of Ibáñez, Miguel, Siverio, Felipe, Alonso, María R. & Ponte-Lira, Carmen E., 2006, Two Canariella species (Gastropoda: Helicodea: Hygromiidae) endemic to the Northwest Tenerife (Canary Islands), pp. 33-45 in Zootaxa 1258 on pages 36-37, DOI: 10.5281/zenodo.173127
Malthinus (Malthinus) rauschi Wittmer 1978
Creators: name: Fanti, Fabrizio
name: Ghahari, Hassan
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cantharidae
Malthinus
Malthinus rauschi

description: Malthinus (Malthinus) rauschi Wittmer, 1978
Distribution in Iran. Mazandaran: Elburs Mt., Chalus-Karaj, 300- 1,700 m (Wittmer 1978). Generic records: Iran (Kazantsev & Brancucci 2007; Koçak & Kemal 2015).
Remarks. Endemic to Iran.
description: Published as part of Fanti, Fabrizio & Ghahari, Hassan, 2016, A checklist of the soldier beetles (Coleoptera: Elateroidea: Cantharidae) of Iran, pp. 529-551 in Zootaxa 4196 (4) on page 544, DOI: 10.11646/zootaxa.4196.4.4, http://zenodo.org/record/168319
Re-runnable code is all you need
Creators: name: Gasser, Linus
name: Wixinger, Roman
Publisher: name: Zenodo
Year: 2024
Subjects: rse

description: Reproducibility is fundamental to scientific integrity but is increasingly compromised by the common practices of publishing papers without code, or sharing code that cannot be executed easily on another computer due to unmanaged dependencies and computing environments. This talk introduces the landscape of tools that enable researchers to overcome these barriers, with a focus on Devbox, a tool designed to encapsulate computing environments. With Devbox it is easy to ensure that scientific code is not just runnable but also replicable across various systems. By highlighting specific case studies, this session demonstrates how Devbox and similar technologies can transform research workflows, dramatically saving time with automation, making it easier to collaborate, and enhancing the credibility of results. Attendees will gain actionable strategies to implement a culture of reproducibility, making their research transparent and reproducible with minimal effort.
A recording of this session is available on YouTube: https://youtu.be/YX90-ZoJ_T8
ONA ALLASI-FAZILATLI JAMIYAT BARPO ETISHNING  MA'NAVIY OMILI SIFATIDA
Creators: name: Imyamin Kirgizov
Publisher: name: Academic Scientific Research Group
Year: 2024

description: Mazkur maqolada milliy qo‘shiq janri sifatida allaning bola tarbiyasidagi o`rni, ijtimoiy munosabatlar va jamiyatdagi insoniy qadriyatlarning mustahkamlanishiga xizmat qilishi, qolaversa, allaning turli madaniyatlardagi o‘rni, ijro uslublari, tarixiy mohiyati va qadimdan bugungi kungacha saqlanib qolgan an’analari keng yoritilgan. Shuningdek, allaning ijtimoiy tarbiya, ma’naviy boylik va ijodiy ilhom manbai sifatidagi roli ham tahlil qilingan.
Creative Proteomics
Creators: name: West, Dora
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 310205
subject: Proteomics and metabolomics
classificationCode: 310101
subject: Analytical biochemistry

description: Creative Proteomics has gradually developed into an integrated company that provides proteomics, metabolomics, glycomics, and bioinformatics analysis services to researchers in the pharmaceutical, biotechnology, agriculture and nutrition industries, as well as academic and government organizations. With a continuing focus on quality, we are proud of satisfying the needs of our clients both at home and abroad covering more than 50 countries and districts.
Malthinus (Malthinus) rhaphidiceps Kiesenwetter 1852
Creators: name: Fanti, Fabrizio
name: Ghahari, Hassan
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cantharidae
Malthinus
Malthinus rhaphidiceps

description: Malthinus (Malthinus) rhaphidiceps Kiesenwetter, 1852
obscuricollis Fairmaire, 1883.
Distribution in Iran. Generic records: Iran (Kazantsev & Brancucci 2007). Distribution outside Iran. Turkey (Kazantsev & Brancucci 2007). Remarks. Its presence in Iran needs further evidences.
description: Published as part of Fanti, Fabrizio & Ghahari, Hassan, 2016, A checklist of the soldier beetles (Coleoptera: Elateroidea: Cantharidae) of Iran, pp. 529-551 in Zootaxa 4196 (4) on page 545, DOI: 10.11646/zootaxa.4196.4.4, http://zenodo.org/record/168319
Atractogaster semisculptus Kriechbaumer 1872
Creators: name: Varga, Oleksandr
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Ichneumonidae
Atractogaster
Atractogaster semisculptus

description: Atractogaster semisculptus Kriechbaumer, 1872
Records. Ivano-Frankivsk Region (Varga, 2018a)
Material examined. Transcarpathian Reg.: 3 ♀, Vynogradiv Distr., Chorna Gora, 280 m, oak forest, 48.138338 N, 23.073689 E, SN, 3.v.2018, leg. O. Varga.
Distribution. Palaeartic; Ukraine: Ivano-Frankivsk and Transcarpathian Regs.
Biology. CMF, PMF. May–June.
description: Published as part of Varga, Oleksandr, 2019, Taxonomy and distribution of pimpline parasitoids (Hymenoptera, Ichneumonidae, Pimplinae) in Ukraine, pp. 1-65 in Zootaxa 4693 (1) on page 11, DOI: 10.11646/zootaxa.4693.1.1, http://zenodo.org/record/3529018
Malthinus (Malthinus) validiceps Pic 1928
Creators: name: Fanti, Fabrizio
name: Ghahari, Hassan
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cantharidae
Malthinus
Malthinus validiceps

description: Malthinus (Malthinus) validiceps Pic, 1928
Distribution in Iran. Generic records: Iran (Pic 1928 [Persia]; Delkeskamp 1939 [Persia], 1977 [Persia]; Wittmer 1972; Kazantsev & Brancucci 2007).
Remarks. Endemic to Iran and poorly known species; record based only on the original description.
description: Published as part of Fanti, Fabrizio & Ghahari, Hassan, 2016, A checklist of the soldier beetles (Coleoptera: Elateroidea: Cantharidae) of Iran, pp. 529-551 in Zootaxa 4196 (4) on page 545, DOI: 10.11646/zootaxa.4196.4.4, http://zenodo.org/record/168319
Malthinus (Malthinus) vartiani Wittmer 1966
Creators: name: Fanti, Fabrizio
name: Ghahari, Hassan
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cantharidae
Malthinus
Malthinus vartiani

description: Malthinus (Malthinus) vartiani Wittmer, 1966
Distribution in Iran. Tehran: Darband, 25 km N of Tehran, 2,000 m (Wittmer 1966). Generic records: Iran (Wittmer 1972; Delkeskamp 1977; Kazantsev & Brancucci 2007).
Remarks. Endemic to Iran.
description: Published as part of Fanti, Fabrizio & Ghahari, Hassan, 2016, A checklist of the soldier beetles (Coleoptera: Elateroidea: Cantharidae) of Iran, pp. 529-551 in Zootaxa 4196 (4) on page 545, DOI: 10.11646/zootaxa.4196.4.4, http://zenodo.org/record/168319
A gentle guide to using the {targets} package for analytic pipelines
Creators: name: Tierney, Nicholas
Publisher: name: Zenodo
Year: 2024
Subjects: rse

description: Data analysis is an iterative process. Data cleaning, exploratory data analysis (EDA), and model fitting are rarely run without a hitch from start to finish. Each step takes time, and often requires revisiting earlier steps to correct for newly discovered problems. For example, in performing EDA, you can unearth a text issue that requires revisiting data cleaning. When you are finally done with the analysis, you will need to reproduce it to check it all works as expected.

To reproduce the analysis, there is a temptation to run the code again from the top, which may take a long time. You can save time by saving model outputs, but if you make a change to an earlier data cleaning step, you'll need to update everything that depends on that. You can write code to manage these dependencies, but this is a hard problem. Fortunately, "pipeline tools" are an existing approach to manage these dependencies. They take care of the details of watching which files and relevant code changes, and only run the necessary parts. The {targets} R package is one popular pipeline approach, providing extensive documentation and user support. However, it presents a different coding practice that might not be familiar.  

In this interactive walkthrough, I will gently introduce the ideas behind {targets}, and will live code a data analysis using {targets} from scratch, warts and all. I encourage questions throughout the live coding walkthrough, so you can understand the process and see how this could benefit your own work.

A recording of this session is available on YouTube: https://youtu.be/N7kHznha_o0
Malthodes (Malthodes) angulistilus Wittmer 1978
Creators: name: Fanti, Fabrizio
name: Ghahari, Hassan
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cantharidae
Malthodes
Malthodes angulistilus

description: Malthodes (Malthodes) angulistilus Wittmer, 1978
Distribution in Iran. Lorestan: 50 km SE of Khorramabad, Zagros Mt., 1,700 m (Wittmer 1978). Generic records: Iran (Kazantsev & Brancucci 2007).
Remarks. Endemic to Iran.
description: Published as part of Fanti, Fabrizio & Ghahari, Hassan, 2016, A checklist of the soldier beetles (Coleoptera: Elateroidea: Cantharidae) of Iran, pp. 529-551 in Zootaxa 4196 (4) on page 545, DOI: 10.11646/zootaxa.4196.4.4, http://zenodo.org/record/168319
The HPC and RSE Experience Programme
Creators: name: D'Alessandro, Adrian
Publisher: name: Zenodo
Year: 2024
Subjects: rse

description: The Imperial College Research Computing Service is running a programme that will create a pathway into RSE and HPC careers. This program is called the HPC and RSE Experience Programme and is a six month job for Early Career Researchers wanting to dip their toes in the world of HPC and RSE. This program gives them exposure to working as an RSE and working alongside the HPC sys admins and user support staff. We are enthusiastic about this programme, it is a great training and career development opportunity for the participants and it expands the pool of RSE and HPC-aware researchers in the wider community. We have run three iterations of this and the fourth one will be starting a couple of months after RSECon24. We would like to use this poster as an opportunity to discuss ideas with the community to improve the structure of the programme and encourage other RSE groups to run similar programmes.
A recording of this session is available on YouTube: https://youtu.be/MjhhCI0GOU8
MPEC 2024-J126 : COMET C/2024 G5 (Leonard)
Creators: name: Minor Planet Center Staff
Publisher: name: The Minor Planet Center
Year: 2024
Subjects: subject: Small Solar System bodies
valueUri: http://astrothesaurus.org/uat/1469
subject: COMET C/2024 G5 (Leonard)

description: The Minor Planet Electronic Circulars contain information on unusual minor planets, routine data on comets and natural satellites, and occasional editorial announcements.  They are published on behalf of Division F of the International Astronomical Union by the Minor Planet Center, Smithsonian Astrophysical Observatory, Cambridge, MA 02138, U.S.A.
Malthodes (Malthodes) bourgeoisi Reitter 1888
Creators: name: Fanti, Fabrizio
name: Ghahari, Hassan
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cantharidae
Malthodes
Malthodes bourgeoisi

description: Malthodes (Malthodes) bourgeoisi (Reitter, 1888)
Malthodes rhaphidostylus Pic, 1912: 59. Locus typicus “environ Caucase”. [synonymized by Brancucci 1980: 337].
Distribution in Iran. Guilan: Assalem 1,300 m (Wittmer 1972, as Malthodes rhaphidostylus). Generic records: Iran (Delkeskamp 1977, as Malthodes rhaphidostylus; Kazantsev 2004, 2011; Kazantsev & Brancucci 2007; Koçak & Kemal 2015).
Distribution outside Iran. Georgia, Russia (Southern European Territory), Turkey (Kazantsev & Brancucci 2007; Kazantsev 2011; Koçak & Kemal 2015).
description: Published as part of Fanti, Fabrizio & Ghahari, Hassan, 2016, A checklist of the soldier beetles (Coleoptera: Elateroidea: Cantharidae) of Iran, pp. 529-551 in Zootaxa 4196 (4) on page 545, DOI: 10.11646/zootaxa.4196.4.4, http://zenodo.org/record/168319
Central position of the human histo (blood) group O(H)  and phenotype-determining enzymes in growth and infectious disease.
Creators: name: Arend, Peter
Publisher: name: Figshare
Year: 2017
Subjects: Cancer

description: The human ABO(H) blood group phenotypes arise from the evolutionarily oldest
genetic system found in primate populations, but they originated in critical
molecular complementarity with distinct eukaryotic and prokaryotic pathogens,
while the development of non-O(H) phenotypes is associated with impaired
formation of adaptive and innate immunoglobulin specificities due to clonal
selection and phenotype formation in plasma proteins. Indeed, compared with
individuals with blood group O(H), blood group A individuals not only have a
significantly higher risk of developing certain types of cancer but also
exhibit high susceptibility to malaria tropica or infection by Plasmodium
falciparum. Thus, the phenotype-determining blood group A glycotransferase(s),
affecting the levels of anti-A/Tn cross-reactive immunoglobulins in phenotypic
glycosidic accommodation, might also mediate the adhesion of the parasite to
host cells via trans-species O-GalNAc glycosylation of the
parasite's serine repeat antigen (SERA), simultaneously excluding the
possibility of antibody formation against the resulting hybrid Tn antigen. In contrast, human blood group O(H), lacking this
enzyme and providing the molecular mechanism of protecting human reproduction,
is indicated to confer a survival advantage regarding the overall risk of
developing cancer, and individuals with this blood group rarely develop
life-threatening infections involving evolutionarily selective malaria strains.
Central position of the human histo (blood) group O(H)  and phenotype-determining enzymes in growth and infectious disease.
Creators: name: Arend, Peter
Publisher: name: Figshare
Year: 2017
Subjects: Cancer

description: The human ABO(H) blood group phenotypes arise from the evolutionarily
oldest genetic system found in primate populations, but they originated in
critical molecular complementarity with distinct eukaryotic and prokaryotic
pathogens, while the development of non-O(H) phenotypes is associated with impaired
formation of adaptive and innate immunoglobulin specificities due to clonal
selection and phenotype formation in plasma proteins. Indeed, compared with
individuals with blood group O(H), blood group A individuals not only have a
significantly higher risk of developing certain types of cancer but also
exhibit high susceptibility to malaria tropica or infection by Plasmodium
falciparum. Thus, the phenotype-determining blood group A
glycotransferase(s), affecting the levels of anti-A/Tn cross-reactive immunoglobulins
in phenotypic glycosidic accommodation, might also mediate the adhesion of the
parasite to host cells via trans-species O-GalNAc glycosylation of
abundantly expressed serine residues, occurring even on the surface of inoculated
sporozoites, and excluding the possibility of antibody formation against the
resulting hybrid antigen. In contrast, human blood group O(H), lacking this
enzyme and providing the molecular mechanism of protecting normal human
reproduction, is indicated to confer a survival advantage regarding the overall
risk of developing cancer, and individuals with this blood group rarely develop
life-threatening infections involving evolutionarily selective malaria strains.
Delomerista borealis Walkley 1960
Creators: name: Varga, Oleksandr
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Ichneumonidae
Delomerista
Delomerista borealis

description: Delomerista borealis Walkley, 1960
Records. Ivano-Frankivsk Region (Varga, 2018a)
Material examined. Literature data only.
Distribution. Holartic; Ukraine: Ivano-Frankivsk Reg.
Biology. CMF. May.
description: Published as part of Varga, Oleksandr, 2019, Taxonomy and distribution of pimpline parasitoids (Hymenoptera, Ichneumonidae, Pimplinae) in Ukraine, pp. 1-65 in Zootaxa 4693 (1) on page 11, DOI: 10.11646/zootaxa.4693.1.1, http://zenodo.org/record/3529018
Central position of the human histo (blood) group O(H)  and phenotype-determining enzymes in growth and infectious disease.
Creators: name: Arend, Peter
Publisher: name: Figshare
Year: 2017
Subjects: Cancer

description: The human ABO(H) blood group phenotypes arise from the evolutionarily
oldest genetic system found in primate populations, but they originated in
critical molecular complementarity with distinct eukaryotic and prokaryotic
pathogens, while the development of non-O(H) phenotypes is associated with impaired
formation of adaptive and innate immunoglobulin specificities due to clonal
selection and phenotype formation in plasma proteins. Indeed, compared with
individuals with blood group O(H), blood group A individuals not only have a
significantly higher risk of developing certain types of cancer but also
exhibit high susceptibility to malaria tropica or infection by Plasmodium
falciparum. Thus, the phenotype-determining blood group A
glycotransferase(s), affecting the levels of anti-A/Tn cross-reactive immunoglobulins
in phenotypic glycosidic accommodation, might also mediate the adhesion of the
parasite to host cells via trans-species O-GalNAc glycosylation of
abundantly expressed serine residues, occurring even on surface of inoculated
sporozoites, and excluding the possibility of antibody formation against the
resulting hybrid antigen. In contrast, human blood group O(H), lacking this
enzyme and providing the molecular mechanism of protecting normal human
reproduction, is indicated to confer a survival advantage regarding the overall
risk of developing cancer, and individuals with this blood group rarely develop
life-threatening infections involving evolutionarily selective malaria strains.
Species pool distributions along functional trade-offs shape plant productivity–diversity relationships
Creators: name: Chalmandrier, Loïc
name: Albouy, Camille
Publisher: name: Figshare
Year: 2017
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Scripts, data necessary to re-do the simulations and simulation analysis of the article "Species pool distributions along functional trade-offs shape plant productivity–diversity relationships"
Malthodes (Malthodes) caspicus Wittmer 1972
Creators: name: Fanti, Fabrizio
name: Ghahari, Hassan
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cantharidae
Malthodes
Malthodes caspicus

description: Malthodes (Malthodes) caspicus Wittmer, 1972
Distribution in Iran. Golestan: Golae Lovae at Minoodasht, via Gorgan, 750- 1,400 m (Wittmer 1972). Guilan: Assalem, between Hashtpar and Heroabad, 1,300 m (Wittmer 1972). Mazandaran: Alamdeh at Chalus, 500-900 m (Wittmer 1972). Generic records: Iran (Delkeskamp 1977; Kazantsev & Brancucci 2007).
Remarks. Endemic to Iran.
description: Published as part of Fanti, Fabrizio & Ghahari, Hassan, 2016, A checklist of the soldier beetles (Coleoptera: Elateroidea: Cantharidae) of Iran, pp. 529-551 in Zootaxa 4196 (4) on page 545, DOI: 10.11646/zootaxa.4196.4.4, http://zenodo.org/record/168319
Impact of Using A Modern Compiler and Optimized Workflow on the Performance of a Complex Nuclear Fusion Application for ITER
Creators: name: Dutta, Someswar
name: Aggarwal, Deepak
Publisher: name: Zenodo
Year: 2024
Subjects: rse

description: Harnessing the vast computational power of HPC systems empowers us to expedite and magnify our efforts, effectively addressing intricate challenges spanning various domains. Yet, optimizing scientific applications to fully exploit this potential necessitates substantial expertise and dedication to code optimization.
This work presents a pragmatic approach tailored to enhance the performance of PARTICLE-3D (P3D), a nuclear fusion application code crucial for simulating runaway electron dynamics—a critical aspect impacting the operational lifespan of nuclear fusion machines like ITER. Transitioning from a legacy compiler dependency, the authors identified performance bottlenecks within the serial version of the code, particularly pertaining to I/O communication between subroutine calls. By meticulously restructuring the code and refining inter-subroutine communication, the article highlights the process adopted by the authors to unlock embarrassingly parallel computation workflow on the HPC cluster. The optimized version of P3D exhibits a performance improvement of several orders of magnitude compared to its base version. These optimizations not only elevated the performance but also improved the code portability, ensuring seamless integration with diverse HPC architectures equipped with modern compilers. 
The methodology described here can serve as a valuable case study for early researchers and code developers to enhance the performance of any such code designed for problems characterised by the similar algorithmic topologies.

A recording of this session is available on YouTube: https://youtu.be/MjhhCI0GOU8
title: Nutrient substitution for secondary fertilizer: Is current practice comprehensive enough? A review to reveal the LCA methodological challenges
Creators: name: Miao, Chunyu
name: Zeller, Vanessa
name: Schebek, Liselotte
Publisher: name: Springer
Year: 2025

description: Purpose: As LCA is widely applied for benchmarking and decision-making, the need to clarify the ambiguity within fundamental methodological issues is imperative. Nutrient substitution, a subcategory of substitution, where credits are given for secondary fertilizer, is one of the common means to solve multi-functionality in LCA studies. This review aims to unravel the unique challenges associated with nutrient substitution, given the increasing relevance attributed to this topic.

Methods: A systematic review of LCA studies available in Scopus and Web of Science (WoS) has been conducted. Studies about the recovery of nutrients from waste streams to produce fertilizer were scrutinized. As this review focuses on nutrient substitution methodology, only studies applying substitution for secondary fertilizer were included. PRISMA checklist has been used for reporting and completeness check of the review. Results are demonstrated from system modeling and explicit substitution procedure perspectives, supplemented by an investigation on sensitivity analysis.

Results and discussion: As a general caveat, poor documentation and low transparency have been observed. Substitution has been used to model attributional (ALCA) and consequential LCA (CLCA) systems. The choice of functional unit combined with nutrient substitution in ALCA could attribute impacts to other functions than those studied. The determination of system boundary, especially the incorporation of the Use on Land (UoL) stage and avoided UoL emissions, is not always in accordance with the selected system modeling. Furthermore, there is no consensus on calculating the nutrient substitution rate. Single and aggregated factors comprising internal product quality, external-environmental, and external-societal variables have been identified. A prevalent observation among most studies is the absence of a sensitivity analysis pertaining to the nutrient substitution rate.

Conclusion: The consistency of nutrient substitution cannot be achieved without an unambiguous definition and connotation of substitution and system modeling. The exclusion of the UoL phase not only limits the scope of a study but also fails to reflect quality differences between primary and secondary products. The key lies in elevating awareness regarding the intricacies of nutrient substitution, which consequently necessitates a rigorous definition and integration of influential factors when calculating substitutability.
Central position of the human histo (blood) group O(H)  and phenotype-determining enzymes in growth and infectious disease.
Creators: name: Arend, Peter
Publisher: name: Figshare
Year: 2017
Subjects: Cancer

description: The human ABO(H) blood phenotypes arise from the evolutionarily oldest
genetic system found in primate populations, but they originated in critical
molecular complementarity with distinct eukaryotic and prokaryotic pathogens,
while the development of non-O(H) phenotypes is associated with impaired
formation of adaptive and innate immunoglobulin specificities due to clonal
selection and phenotype formation in plasma proteins. Indeed, compared with
individuals with blood group O(H), blood group A individuals not only have a
significantly higher risk of developing certain types of cancer but also
exhibit high susceptibility to malaria tropica or infection by Plasmodium
falciparum. Thus, the phenotype-determining blood group A glycotransferase(s),
affecting the levels of anti-A/Tn cross-reactive immunoglobulins in phenotypic
glycosidic accommodation, might also mediate the adhesion of the parasite to
host cells via trans-species O-GalNAc glycosylation of the
parasite's serine repeat antigen (SERA), simultaneously excluding the
possibility of antibody formation against the resulting hybrid Tn antigen. In contrast, human blood group O(H), lacking this
enzyme and providing the molecular mechanism of protecting human reproduction,
is indicated to confer a survival advantage regarding the overall risk of
developing cancer, and individuals with this blood group rarely develop
life-threatening infections involving evolutionarily selective malaria strains.
Malthodes (Malthodes) crassicornis Maklin 1846
Creators: name: Fanti, Fabrizio
name: Ghahari, Hassan
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cantharidae
Malthodes
Malthodes crassicornis

description: Malthodes (Malthodes) crassicornis (Mäklin, 1846)
helveticus Kiesenwetter, 1852; moesiacus J. Weise, 1895 (Maltharcus); subunicolor Pic, 1911; vosykai Wittmer, 1964.
Distribution in Iran. Mazandaran: 20 Km S of Nowshahr [= Nūshahr], 1,400 m (Wittmer 1997). Generic records: Northwestern Iran (Švihla 2005 [Wittmer 1992 (but in this paper, no Iranian localities are reported), 1997]), Iran (Kazantsev 2004, 2011; Kazantsev & Brancucci 2007; Koçak & Kemal 2015).
Distribution outside Iran. Central and East Europe, Georgia, Great Britain, Russia (Southern European Territory), Turkey, Ukraine (Kazantsev & Brancucci 2007).
description: Published as part of Fanti, Fabrizio & Ghahari, Hassan, 2016, A checklist of the soldier beetles (Coleoptera: Elateroidea: Cantharidae) of Iran, pp. 529-551 in Zootaxa 4196 (4) on page 546, DOI: 10.11646/zootaxa.4196.4.4, http://zenodo.org/record/168319
Central position of the human histo (blood) group O(H)  and phenotype-determining enzymes in growth and infectious disease.
Creators: name: Arend, Peter
Publisher: name: Figshare
Year: 2017
Subjects: Cancer

description: The human ABO(H) blood phenotypes arise from the evolutionarily oldest
genetic system found in primate populations, but they originated in critical
molecular complementarity with distinct eukaryotic and prokaryotic pathogens,
while the development of non-O(H) phenotypes is associated with impaired
formation of adaptive and innate immunoglobulin specificities due to clonal
selection and phenotype formation in plasma proteins. Indeed, compared with
individuals with blood group O(H), blood group A individuals not only have a
significantly higher risk of developing certain types of cancer but also
exhibit high susceptibility to malaria tropica or infection by Plasmodium
falciparum. Thus, the phenotype-determining blood group A glycotransferase(s),
affecting the levels of anti-A/Tn cross-reactive immunoglobulins in phenotypic
glycosidic accommodation, might also mediate the adhesion of the parasite to
host cells via trans-species O-GalNAc glycosylation of the
parasite's serine repeat antigen (SERA), simultaneously excluding the
possibility of antibody formation against the resulting Tn structure. In
contrast, human blood group O(H), lacking this enzyme, is indicated to confer a
survival advantage regarding the overall risk of developing cancer, and
individuals with this blood group rarely develop life-threatening infections
involving evolutionarily selective malaria strains.
Performant Python Patterns: Small changes to speed up your Python code
Creators: name: Chisholm, Robert
Publisher: name: Zenodo
Year: 2024
Subjects: rse

description: Python is a highly accessible programming language commonly used by researchers, most of whom are not formally trained programmers. It's easy to get software working with Python, and equally as easy to overlook the requirements for your Python code to be performant.This interactive talk presents multiple versions of common Python programming patterns, attendees will have the opportunity to vote (via Wooclap) for which they think is fastest or the expected speedup, before the answer is displayed and explained.Writing performant code is often overlooked but can increase research productivity, improve shared resource availability (e.g. HPC) and reduce energy usage. This talk aims to expose how some small changes to Python code, and using packages such as NumPy and pandas correctly, can lead to big performance improvements.
A recording of this session is available on YouTube: https://youtu.be/JeAzyCzFr7U
Delomerista japonica Cushman 1937
Creators: name: Varga, Oleksandr
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Ichneumonidae
Delomerista
Delomerista japonica

description: Delomerista japonica Cushman, 1937
Records. Ivano-Frankivsk Region (Varga, 2018a)
Material examined. Literature data only.
Distribution. Holartic; Ukraine: Ivano-Frankivsk Reg.
Biology. CMF. June.
description: Published as part of Varga, Oleksandr, 2019, Taxonomy and distribution of pimpline parasitoids (Hymenoptera, Ichneumonidae, Pimplinae) in Ukraine, pp. 1-65 in Zootaxa 4693 (1) on page 11, DOI: 10.11646/zootaxa.4693.1.1, http://zenodo.org/record/3529018
Malthodes (Malthodes) dimidiatocollis subsp. seleukos Wittmer 1972
Creators: name: Fanti, Fabrizio
name: Ghahari, Hassan
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cantharidae
Malthodes
Malthodes dimidiatocollis
Malthodes (malthodes) dimidiatocollis seleukos wittmer, 1972

description: Malthodes (Malthodes) dimidiatocollis seleukos Wittmer, 1972
Distribution in Iran. Guilan: Assalem, between Hashtpar and Heroabad, 1,300-1,800 m (Wittmer 1972; Fanti 2014), Assalem, Elburs Mt. (Wittmer 1978). Tehran: Western Elborz Mts. (Švihla 1983). Generic records: Iran (Delkeskamp 1977; Kazantsev & Brancucci 2007; Kazantsev 2011).
Remarks. Endemic to Iran.
description: Published as part of Fanti, Fabrizio & Ghahari, Hassan, 2016, A checklist of the soldier beetles (Coleoptera: Elateroidea: Cantharidae) of Iran, pp. 529-551 in Zootaxa 4196 (4) on page 546, DOI: 10.11646/zootaxa.4196.4.4, http://zenodo.org/record/168319
Malthodes (Malthodes) dimidiatocollis subsp. zagrosensis Wittmer 1978
Creators: name: Fanti, Fabrizio
name: Ghahari, Hassan
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cantharidae
Malthodes
Malthodes dimidiatocollis
Malthodes (malthodes) dimidiatocollis zagrosensis wittmer, 1978

description: Malthodes (Malthodes) dimidiatocollis zagrosensis Wittmer, 1978
Distribution in Iran. Lorestan: 50 km SE Khorramabad, Zagros Mt., 1,700 m (Wittmer 1978; Fanti 2014), Zagros Mts. (Švihla 1983). Generic records: Iran (Kazantsev & Brancucci 2007; Kazantsev 2011). Distribution outside Iran. Armenia (Švihla 1983).
description: Published as part of Fanti, Fabrizio & Ghahari, Hassan, 2016, A checklist of the soldier beetles (Coleoptera: Elateroidea: Cantharidae) of Iran, pp. 529-551 in Zootaxa 4196 (4) on page 546, DOI: 10.11646/zootaxa.4196.4.4, http://zenodo.org/record/168319
Developing PyCam: Software for acquiring and processing volcanic UV SO2 camera data
Creators: name: Brady, Daniel
name: Wilkes, Thomas
name: Pering, Tom
Publisher: name: Zenodo
Year: 2024
Subjects: rse

description: Monitoring of sulphur dioxide (SO2) emission rates in volcanic plumes provides valuable insights into the state of a volcanic system, aiding eruption forecasting efforts for many volcanoes worldwide. SO2 cameras exploit the strong absorption signature of SO2 at ultraviolet (UV) wavelengths to measure emission rates with UV-sensitive cameras. However, this approach has been limited by the cost of traditional scientific-grade equipment. In 2016 a group from The University of Sheffield developed PiCam UV, an imaging system based on a low-cost modified visible imaging detector that produces comparable data to traditional equipment at a fraction of the cost.

Whilst previous work has developed open-source libraries for processing SO2 camera data, the software has been complex and incredibly difficult for end users to utilise. Development of the PyCam software began in mid-2019 to provide a user-friendly, graphical interface for interacting with PiCam systems, i.e. remotely adjusting settings and on- and off-line processing of collected data. RSE involvement began in early 2023 and will continue until at least 2025, with the aim of improving the quality, sustainability and usability of the software going forward. This is of particular importance to this project since the end users may not be experts in remote sensing or programming, but need to generate reliable SO2 emission rates to combine with other strands of volcano monitoring data (e.g. seismics).

Here, we give a brief overview of the PiCam hardware and PyCam software, describe the work already completed to improve PyCam, and outline the future work planned.
A recording of this session is available on YouTube: https://youtu.be/MjhhCI0GOU8
Malthodes (Malthodes) hoberlandti Svihla 1983
Creators: name: Fanti, Fabrizio
name: Ghahari, Hassan
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cantharidae
Malthodes
Malthodes hoberlandti

description: Malthodes (Malthodes) hoberlandti Švihla, 1983
Distribution in Iran. Khuzestan: Hoseiniyieh, 360 m, 28 km NNW of Andimeshk (Švihla 1983). Generic records: Iran (Kazantsev & Brancucci 2007).
Remarks. Endemic to Iran.
description: Published as part of Fanti, Fabrizio & Ghahari, Hassan, 2016, A checklist of the soldier beetles (Coleoptera: Elateroidea: Cantharidae) of Iran, pp. 529-551 in Zootaxa 4196 (4) on page 546, DOI: 10.11646/zootaxa.4196.4.4, http://zenodo.org/record/168319
Malthodes (Malthodes) holzschuhi Wittmer 1978
Creators: name: Fanti, Fabrizio
name: Ghahari, Hassan
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cantharidae
Malthodes
Malthodes holzschuhi

description: Malthodes (Malthodes) holzschuhi Wittmer, 1978
Distribution in Iran. Mazandaran: Elburs, 20 km S of Chalus (Wittmer 1978). Generic records: Iran (Kazantsev & Brancucci 2007).
Remarks. Endemic to Iran.
description: Published as part of Fanti, Fabrizio & Ghahari, Hassan, 2016, A checklist of the soldier beetles (Coleoptera: Elateroidea: Cantharidae) of Iran, pp. 529-551 in Zootaxa 4196 (4) on page 546, DOI: 10.11646/zootaxa.4196.4.4, http://zenodo.org/record/168319
Malthodes (Malthodes) incostatus Wittmer 1972
Creators: name: Fanti, Fabrizio
name: Ghahari, Hassan
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cantharidae
Malthodes
Malthodes incostatus

description: Malthodes (Malthodes) incostatus Wittmer, 1972
Distribution in Iran. Mazandaran: Alamdeh at Chalus, 500-900 m (Wittmer 1972). Generic records: Iran (Delkeskamp 1977; Kazantsev & Brancucci 2007).
Remarks. Endemic to Iran.
description: Published as part of Fanti, Fabrizio & Ghahari, Hassan, 2016, A checklist of the soldier beetles (Coleoptera: Elateroidea: Cantharidae) of Iran, pp. 529-551 in Zootaxa 4196 (4) on page 546, DOI: 10.11646/zootaxa.4196.4.4, http://zenodo.org/record/168319
Биогербициды для контроля численности сорных растений в агроценозах
Creators: name: Пась Анна Николаевна
name: Дидович Светлана Витальевна
name: Золотилов Виктор Анатольевич
name: Алексеенко Ольга Петровна
Publisher: name: Zenodo
Year: 2024

description: В рамках стратегии производства органической продукции растениеводства ведется поиск биологических путей защиты растений как альтернатива использования синтетических ксенобиотиков, разрабатываются биологические и биорациональные гербициды от сорных растений. Цель исследований – разработка и установление степени влияния биорациональных гербицидных препаративных форм на сорную растительность  в условия агроценоза.

Исследования проводили в 2023–2024 гг в отделе сельскохозяйственной микробиологии, апробацию результатов – в Селекционно-семеноводческом центре эфиромасличных культур ФГБУН «НИИСХ Крыма» в условиях полевого опыта. Объект исследования - штаммы микромицетов Penicillium vanoranjei MSK 3Г и Fusarium iranicum 200ГР – основа биорациональных гербицидных форм (БГФ). В лабораторных условиях фитотоксичность штаммов оценивали на сельскохозяйственных культурах 29 видов по показателям высоты и фитомассы, рассчитывая средний индекс фиотоксичности в модификации Багдасаряна. В полевых условиях обработку проводили на черноземе южном в предгорной зоне Крыма по предшественникам: 2023 г – кориандр (C. sativum), в 2024 г.  – пшеница мягкая (T. aestivum) в фазе 4-6 листьев амброзии с плотностью растений 90-140 шт/м2. Площадь апробационной делянки варианта – 0,2 га.  Оценивали степень поражения сорных растений (хлороз, некроз, увядание, усыхание растений). Рабочий раствор со штаммами применяли в дозе 2мл/растение в лабораторных условиях, БГФ – 5 л/га – в полевых экспериментах с инокуляционной массой мицелия 10-13 мг а.с.м./мл.

В лабораторных условиях установлено, что чувствительными к бактеризации исследуемыми штаммами с гербицидным потенциалом оказались растения из  3 семейств Apiaceae, Cucurbitaceae, Fabaceae: укроп, кориандр, тыква, люпин, чина (17,2% из 29 видов) с низким индексом фитотоксичности (ИТФ 0,71-0,9), 82,8% видов были устойчивы к обработке.

В полевых экспериментах выявлено, что БГФ на основе штаммов P. vanoranjei MSK3г и F. iranicum 200ГР через 2 недели после обработки степень поражения  амброзии полыннолистной составила в среднем: в 2023 г. – до 80%, в 2024 г. - 25-32% в сравнении с контролем без обработки. Отмечена высокая степень воздействия БГФ на сорную растительность агроценозов в среднем за 2 года: Осот полевой (S. arvensis) – 20-80%, Лисохвост мышехвостиковидный (A. myosuroides) до 80%, Мак самосейка (P. rhoéas) 50-80%, вьюнок полевой (C. arvensis) 20-70%, подмаренник цепкий (G. aparine L.) – до 60%, при этом бактеризация не оказала гербицидного влияния на сельскохозяйственные растения кориандра (C. sativum), донника (M. officinalis), пшеницы (T. aestivum).
Malthodes (Malthodes) ordubadensis subsp. iranicus Wittmer 1972
Creators: name: Fanti, Fabrizio
name: Ghahari, Hassan
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cantharidae
Malthodes
Malthodes ordubadensis
Malthodes (malthodes) ordubadensis iranicus wittmer, 1972

description: Malthodes (Malthodes) ordubadensis iranicus Wittmer, 1972
Distribution in Iran. Generic records: Iran (Wittmer 1972; Delkeskamp 1977; Kazantsev & Brancucci 2007).
Remarks. Presently thought as endemic to Iran, but possibly also present in Azerbaijan. The nominotypical subspecies Malthodes ordubadensis ordubadensis Reitter (1889) was described from Araxesthal near Ordubad (Azerbaijan), close to Iranian border (Wittmer 1992; Koçak & Kemal 2015) and a future finding in this territory cannot be excluded.
description: Published as part of Fanti, Fabrizio & Ghahari, Hassan, 2016, A checklist of the soldier beetles (Coleoptera: Elateroidea: Cantharidae) of Iran, pp. 529-551 in Zootaxa 4196 (4) on page 546, DOI: 10.11646/zootaxa.4196.4.4, http://zenodo.org/record/168319
Delomerista mandibularis
Creators: name: Varga, Oleksandr
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Ichneumonidae
Delomerista
Delomerista mandibularis

description: Delomerista mandibularis (Gravenhorst, 1829)
Records. Kharkiv and Khmelnytskyi Regions (Kasparyan, 1977).
Material examined. Kyiv Reg.: 1 ♀, Kyiv, Darnytsya, SN, 27.v.1970, leg. A. Kotenko.
Distribution. Holarctic; Ukraine: Kharkiv, Khmelnytskyi and Kyiv Regs.
Biology. CMF, CEMF, EEFS. May.
description: Published as part of Varga, Oleksandr, 2019, Taxonomy and distribution of pimpline parasitoids (Hymenoptera, Ichneumonidae, Pimplinae) in Ukraine, pp. 1-65 in Zootaxa 4693 (1) on page 11, DOI: 10.11646/zootaxa.4693.1.1, http://zenodo.org/record/3529018
Reproducible distributed research in practice
Creators: name: FitzJohn, Richard
Publisher: name: Zenodo
Year: 2024
Subjects: rse

description: Have you ever tried version-controlling a data set with git and then using code from the same git repository to track it? Or tried to track different versions of outputs from one analysis as you use them in another? Or shared and collaborated on those analyses outputs as you might share code, docker containers or virtual machines? If so, you have probably run into limitations of our current tooling, just like all the other researchers who hit these problems every day.
In this talk we show how a multilingual distributed analysis approach we developed enables researchers to stop thinking about the details and facilitates collaboration and reproducibility.  Our approach ("orderly") tries to address shortcomings in existing data-versioning and workflow tools to enable researchers to automatically track provenance in data and analysis products as they move from output of one analysis to inputs in another. Our tool is neither a workflow or data-versioning tool that forces data to behave like code. Instead, it leans on metaphors from containerisation by allowing researchers to compose together analyses from building blocks of previous analyses which expose a simple interface describing their inputs and outputs.  Our system is designed to be progressive, scaling from a single user on a laptop to a distributed collection of researchers sharing "packets" of data via a web application.
The world probably does not need more workflow tools, but our experience indicates there are important researcher needs in data management that are still poorly met.
A recording of this session is available on YouTube: https://youtu.be/lkPgihFQbrk