cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Deep learning and protein embedding at the Bologna Biocomputing Group
Creators: name: Castrense Savojardo
name: Manfredi, Matteo
name: Vazzana, Gabriele
name: Martelli, Pier Luigi
name: Casadio, Rita
Publisher: name: F1000 Research Limited
Year: 2023

description: The Bologna Biocomputing group of the Italian Elixir Node (htpp://www.biocomp.unibo.it) is active in offering services related to protein and protein variant functional and structural annotation. The most recent tools based on Deep Learning, take advantage of protein language models (PLMs, such as ProTE5 and ESM1) for protein encoding. PLMs emerged as a promising framework for protein representation, providing an effective and time-efficient alternative to standard encodings based on evolutionary. These models are pre-trained in a task-independent way on large databases of protein sequences (e.g., UniRef and/or BFD). Pre-trained models are released to compute meaningful representations of proteins and residues, to be in turn adopted in input for different downstream prediction tasks (a process called fine-tuning). In this context, we developed ISPRED-SEQ, (https://ispredws.biocomp.unibo.it/sequence/), a novel web server for computing Protein-Protein interaction (PPI) at proteome level, identifying PPI sites from the protein sequence with deep neural networks and input features provided by embeddings. ISPRED-SEQ outperforms state-of-the-art methods on several independent datasets (Manfredi et al., 2023, JMB Web Server Issue, in press) and is free for usage in proteome annotation in the Elixir-IT service network. Similarly, E-SNPs&GO, takes advantage of protein embeddings to compute the probability that a single residue variation is or not disease associated (https://esnpsandgo.biocomp.unibo.it/methods/; Manfredi et al, Bioinformatics, 38:5168-5174) Discriminating harmful protein variations from neutral ones is one of the crucial challenges in precision medicine. Our tool, based on artificial intelligence adopts models for protein sequence encoding, bypassing database searches for evolutionary information.
Blutiger Kampf! Die projectirte Belagerung von Pesth. Unerhörte Gräuelscenen und die Befürchtung "Ungarn ist verloren"; [1848]
Creators: name: (:Unav)
Publisher: name: Universitätsbibliothek der Ludwig-Maximilians-Universität München
Year: 2018

description: Kopftitel
A physical model for state transitions in black hole X-ray binaries
Creators: name: Nixon, Chris
name: Salvesen, Greg
Publisher: name: arXiv
Year: 2013
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: We present an accretion cycle which can explain state transitions and other observed phenomena in black hole X-ray binaries. This model is based on the process of disc tearing, where individual rings of gas break off the disc and precess effectively independently. This occurs when the Lense-Thirring effect is stronger than the local disc viscosity. We discuss implications of this model for quasi-periodic oscillations and the disc-jet-corona coupling. We also speculate on applying this model to active galactic nuclei and other accreting systems.
description: 6 pages, 3 figures. Accepted to MNRAS
Growing Up Communist in the Netherlands and Britain. Childhood, Political Activism, and Identity Formation
Creators: name: Strippoli, Giulia
Publisher: name: Práticas da História. Journal on Theory, Historiography and Uses of the Past
Year: 2022

description: Review of Elke Weesjes, Growing Up Communist in the Netherlands and Britain. Childhood, Political Activism, and Identity Formation. Amsterdam: Amsterdam University Press, 2021, 293 pp.
description: Práticas da História. Journal on Theory, Historiography and Uses of the Past, N.º 14 (2022)
DACP: Enforcing a dynamic access control policy in cross-domain environments Item
Creators: name: Salehi Shahraki, Ahmad
name: Rudolph, Carsten
name: Grobler, Marthie
name: Han, Runchao
Publisher: name: Monash University
Year: 2023
Subjects: classificationCode: 460407
subject: System and network security
classificationCode: 460403
subject: Data security and protection
classificationCode: 460402
subject: Data and information privacy
classificationCode: 460401
subject: Cryptography

description: Enabling hybrid authorisations to enforce dynamic access control policy from single-domain to cross-domain environments (CDEs) is important for distributed services. However, traditional Attribute-Based Access Control (ABAC) models are incompatible with CDEs. To fill this gap, approaches that apply cryptographic primitives, e.g., attribute-based encryption (ABE), have been proposed. The computation and storage overhead in most ABE constructions is non-negligible and increases with the complexity of the associated policies. In addition, most access control policy systems enforce authorisation policies in a centralized way, raising serious security and privacy issues. In this paper, we introduce DACP – a practical Dynamic Access Control Policy system supporting dynamic cross-domain authorisation. DACP combines traditional ABAC approach and a novel cryptographic primitive Attribute-based group signature (ABGS). ABAC is used for the access control decision and policy enforcement according to the user’s attributes whereas ABGS is used for managing the user’s attributes between users and authorities. Thus, the user’s attributes are securely distributed along with the access structure in CDEs while preserving the user’s privacy. We present the concrete design and implementation of DACP, and evaluate it in real-world settings. The evaluation shows that DACP is practical and efficient in CDEs.
Social Movements, Cultural Memory and Digital Media: Mobilising Mediated Remembrance
Creators: name: Ferreira, Verónica
Publisher: name: Práticas da História. Journal on Theory, Historiography and Uses of the Past
Year: 2022

description: Recensão a Samuel Merrill, Emily Keightley e Priska Daphi, eds., Social Movements, Cultural Memory and Digital Media: Mobilising Mediated Remembrance. Cham: Palgrave Macmillan, 2020, 298 pp.
description: Práticas da História. Journal on Theory, Historiography and Uses of the Past, N.º 14 (2022)
A flexible framework for articulating how student teachers learn teaching, as described by participants in a national review of initial teacher education in England
Creators: name: Harrison-Palmer, Ruth
Publisher: name: Lancaster University
Year: 2022

description: The aim of this study was to elucidate approaches to teaching student teachers how to learn teaching. It was based on a view of learning to teach as complex but that this should not prevent those in the field of initial teacher education from constructing and articulating their own professional knowledge of how they teach student teachers. Using secondary data, generated for a national review of initial teacher education in England, it drew on multiple perspectives from those in the field, to inform the development of a flexible framework for articulating how student teachers learn teaching. The study was positioned within the paradigm of post-positivism and aligned to a critical realist philosophy. To this end, it illuminates the social structures of and for professional practice, through qualitative thematic analysis, which took a hybrid approach to theme generation. The themes generated were used to develop the ‘Pillars of Interaction and Interconnecting Bridges Framework for Articulating ITE Practice’. Rather than focusing on an aspect of practice, the framework and themes that generated it, took a holistic view of initial teacher education, whilst still representing its complexity. Central to the framework and a key finding from the study is the importance of viewing student teachers as teachers of their own learning, learning to learn how to teach. Thus, the findings illuminate how to teach future teachers to also be future learners of teaching. The study offers teacher educators, as well as those developing initial teacher education strategy, a flexible framework to articulate, guide and further develop practice. As such, it contributes to initial teacher education discussion and debates informing current and future policy.
Limits to solar cycle predictability: Cross-equatorial flux plumes
Creators: name: Cameron, R. H.
name: Dasi-Espuig, M.
name: Jiang, J.
name: Işık, E.
name: Schmitt, D.
name: Schüssler, M.
Publisher: name: arXiv
Year: 2013
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Within the Babcock-Leighton framework for the solar dynamo, the strength of a cycle is expected to depend on the strength of the dipole moment or net hemispheric flux during the preceding minimum, which depends on how much flux was present in each hemisphere at the start of the previous cycle and how much net magnetic flux was transported across the equator during the cycle. Some of this transport is associated with the random walk of magnetic flux tubes subject to granular and supergranular buffeting, some of it is due to the advection caused by systematic cross-equatorial flows such as those associated with the inflows into active regions, and some crosses the equator during the emergence process. We aim to determine how much of the cross-equatorial transport is due to small-scale disorganized motions (treated as diffusion) compared with other processes such as emergence flux across the equator. We measure the cross-equatorial flux transport using Kitt Peak synoptic magnetograms, estimating both the total and diffusive fluxes. Occasionally a large sunspot group, with a large tilt angle emerges crossing the equator, with flux from the two polarities in opposite hemispheres. The largest of these events carry a substantial amount of flux across the equator (compared to the magnetic flux near the poles). We call such events cross-equatorial flux plumes. There are very few such large events during a cycle, which introduces an uncertainty into the determination of the amount of magnetic flux transported across the equator in any particular cycle. As the amount of flux which crosses the equator determines the amount of net flux in each hemisphere, it follows that the cross-equatorial plumes introduce an uncertainty in the prediction of the net flux in each hemisphere. This leads to an uncertainty in predictions of the strength of the following cycle.
description: A&A, accepted
title: Why are fluid-rock reactions crucial for sustainably utilizing geotechnical potentials of the deep subsurface, and to tackle future energy challenges?
Creators: name: Fischer ,  Sebastian
Publisher: name: Deutsche Geologische Gesellschaft - Geologische Vereinigung e.V. (DGGV)
Year: 2021

description: In recent years, the deep geological subsurface gained more and more attention as it offers various reservoirs potentially applicable for different geotechnical use options, e.g. deep geothermal energy, geological storage of CO2 and H2/energy. In this context, knowledge about the occurrence and the controlling processes of fluid-rock reactions in space and time is important to guarantee sustainable long-term reservoir utilization. While fluid-rock reactions occur at pore scale, they can significantly influence both reservoir-scale (transport) processes and regional flow regimes. Based on field observations, exemplary fluid-rock reactions in connection with their wide-ranging effects on geotechnical utilizations will be discussed.
Cyphocera decorata Rondani 1851
Creators: name: Sforzi, Alessandra
name: Sommaggio, Daniele
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Tachinidae
Cyphocera
Cyphocera decorata

description: Cyphocera decorata Rondani, 1851
ORIGINAL DESCRIPTION: 1851: 361.
TYPE LOCALITY: “ regioni equatoriali dell’America, principalmente nelle vicinanze del Rio Napo [Equatorial regions of (South) America, mainly in the vicinity of Napo River]” (Rondani 1851: 357).
TYPE MATERIAL: not found in this study.
CURRENT STATUS: valid species, as Deopalpus decoratus (Guimarães 1971: 76, O’Hara et al. 2020: 826).
REMARKS: Rondani (1851: 361) described Cyphocera decorata from just the male sex, without specifying the exact number of specimens, but giving a single measurement of length, from material collected by Osculati (1850) during his journey through equatorial South America. Osculati (1850: 240) named but did not describe the species. Leonardi et al. (1995: 148) and Mazzotti (2011: 166) reported the Osculati collection in Milan as destroyed. We also did not find any material during this study. Rondani described this nominal species under the generic name “ Cyphocera ”, which is an “incorrect subsequent spelling of Cuphocera Macquart, 1845 ” (O’Hara et al. 2011: 68).
description: Published as part of Sforzi, Alessandra & Sommaggio, Daniele, 2021, Catalog of the Diptera types described by Camillo Rondani, pp. 1-438 in Zootaxa 4989 (1) on page 300, DOI: 10.11646/zootaxa.4989.1.1, http://zenodo.org/record/4980621
Fuzzy Controller Design for Assisted Omni-Directional Treadmill Therapy
Creators: name: Khan, Atif Ali
name: Naseer, Oumair
name: Iliescu, Daciana
name: Hines, Evor
Publisher: name: arXiv
Year: 2014
Subjects: subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: One of the defining characteristic of human being is their ability to walk upright. Loss or restriction of such ability whether due to the accident, spine problem, stroke or other neurological injuries can cause tremendous stress on the patients and hence will contribute negatively to their quality of life. Modern research shows that physical exercise is very important for maintaining physical fitness and adopting a healthier life style. In modern days treadmill is widely used for physical exercises and training which enables the user to set up an exercise regime that can be adhered to irrespective of the weather conditions. Among the users of treadmills today are medical facilities such as hospitals, rehabilitation centres, medical and physiotherapy clinics etc. The process of assisted training or doing rehabilitation exercise through treadmill is referred to as treadmill therapy. A modern treadmill is an automated machine having built in functions and predefined features. Most of the treadmills used today are one dimensional and user can only walk in one direction. This paper presents the idea of using omnidirectional treadmills which will be more appealing to the patients as they can walk in any direction, hence encouraging them to do exercises more frequently. This paper proposes a fuzzy control design and possible implementation strategy to assist patients in treadmill therapy. By intelligently controlling the safety belt attached to the treadmill user, one can help them steering left, right or in any direction. The use of intelligent treadmill therapy can help patients to improve their walking ability without being continuously supervised by the specialists. The patients can walk freely within a limited space and the support system will provide continuous evaluation of their position and can adjust the control parameters of treadmill accordingly to provide best possible assistance.
description: Presented at: "The International Conference on Soft Computing and Software Engineering (SCSE 2013)" at San Francisco State University at Downtown Campus, in San Francisco, California, USA, March 1-2, 2013
Exploring the bulk of the BL Lac object population:1. parsec-scale radio structures
Creators: name: Liuzzo, E.
name: Giroletti, M.
name: Giovannini, G.
name: Boccardi, B.
name: Tamburri, S.
name: Taylor, G. B.
name: Casadio, C.
name: Kadler, M.
name: Tosti, G.
name: Mignano, A.
Publisher: name: arXiv
Year: 2013
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Context. The advent of Fermi is changing our understanding on the radio and gamma-ray emission in Active Galactic Nuclei. Contrary to pre-Fermi ideas, BL Lac objects are found to be the most abundant emitters in the gamma-ray band. However, since they are relatively weak radio sources, most of their parsec-scale structure and their multi-frequency properties are poorly understood and/or have not been investigated in a systematically fashion. Aims. Our main goal is to analyze the radio and gamma-ray emission properties of a sample of 42 BL Lacs selected, for the first time in the literature, with no constraint on their radio and gamma-ray flux densities/emission. Methods. Thanks to new Very Long Baseline Array observations at 8 and 15 GHz for the whole sample, we present here fundamental parameters such as radio flux densities, spectral index information, and parsec-scale structure. Moreover, we search for gamma-ray counterparts using data reported in the Second Catalog of Fermi Gamma-ray sources. Results. Parsec-scale radio emission is observed in the majority of the sources at both frequencies. Gamma-ray counterparts are found for 14/42 sources. Conclusions. The comparison between our results in radio and gamma-ray bands points out the presence of a large number of faint BL Lacs showing "non classical" properties such as low source compactness, core dominance, no gamma-ray emission and steep radio spectral indexes. A deeper multiwavelength analysis will be needed.
description: 19 pages, 6 figures, 6 tables, accepted for publication in A&A
Additional file 1 of Veterinary-prescribed physical activity promotes walking in healthy dogs and people
Creators: name: Duncan, Colleen
name: Carswell, Angela
name: Nelson, Tracy
name: Graham, Dan J.
name: Duerr, Felix M.
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Computational Biology

description: Additional file 1. Activity Monitor Review Questions from Exit Questionnaire.
Dual Modulation Faraday Rotation Spectroscopy of HO2
Creators: name: Brumfield, Brian
name: Sun, Wenting
name: Ju, Yiguang
name: Wysocki, Gerard
Publisher: name: arXiv
Year: 2013
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: The technique of dual modulation Faraday rotation spectroscopy has been applied for near shot-noise limited detection of HO2 at the exit of an atmospheric pressure flow reactor. This was achieved by combining direct current modulation at 51 kHz of an external cavity quantum cascade laser system with 610 Hz modulation of the magnetic field generated by a Helmholtz coil. The DM-FRS measurement had a 1.8 times better signal-to-noise ratio than an AC-FRS measurement acquired under identical flow reactor conditions. Harmonic detection of the FRS signal also eliminated the substantial DC-offset associated with electromagnetic intereference pick-up from the Helmholtz coils that is observed in the AC-FRS spectrum. A noise equivalent angle of 4x10^(-9) rad Hz^(-1/2) was observed for the DM-FRS measurement, and this corresponds to a 3 sigma detection limit of 0.2 ppmv Hz^(-1/2).
description: 5 pages, 4 figures, pre-submission manuscript
title: Exploring age inequalities in the management and survival of colorectal cancer patients
Creators: name: Benitez Majano, S
Publisher: name: London School of Hygiene & Tropical Medicine
Year: 2019

description: Background: Cancer survival in England is poorer than in other comparable countries. Older cancer patients generally have less evidence-based treatment, and poorer survival than younger patients. This is often attributed to the increasing presence of comorbidity with age. Concerns exist, particularly in England, that age-related differences in cancer outcomes arise because of clinical decision-making based on chronological age alone. This study aims to examine the impact of age on having optimal cancer management for colorectal cancer (CRC). Methods: Using population-based cancer registration records of 139,457 CRC patients diagnosed in Denmark, England, Norway and Sweden during 2010-2012, I estimate and compare age standardised stage-specific three-year net survival, and the likelihood of receiving radical surgery by age and stage. Then, focusing on the 99,942 patients diagnosed in England, I quantify how far age-related differences in patient management are mediated by comorbidity and the diagnostic route, using causal mediation. Findings: In comparison with Denmark, Norway and Sweden, CRC patients in England had lower three year net survival. There was an age gradient in the proportion treated at each stage of disease in England, which was not as evident in the other countries. Analyses focusing on patients without evidence of comorbidity in England and Denmark showed a similar trend. In England, the proportion of patients with evidence of receiving a full investigation and surgical treatment decreased with age. The age differential was partly mediated by the diagnostic route, but not by comorbidity. Interpretation: These findings suggest that the CRC survival deficit in England can be attributed partly to under-management of older patients. Complex interactions between biological, attitudinal and contextual factors may be behind these findings. Raising the proportion of patients receiving optimal management to the levels observed in comparable countries would improve CRC outcomes, provided that adequate post-operative and long-term care are also available.
Higgs-Pair Production and Measurement of the Triscalar Coupling at LHC(8,14)
Creators: name: Barger, Vernon
name: Everett, Lisa L.
name: Jackson, C. B.
name: Shaughnessy, Gabe
Publisher: name: arXiv
Year: 2013
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: We simulate the measurement of the triscalar Higgs coupling at LHC(8,14) via pair production of h(125 GeV). We find that the most promising hh final state is bb gamma gamma. We account for deviations of the triscalar coupling from its SM value and study the effects of this coupling on the hh cross-section and distributions with cut-based and multivariate methods. Our fit to the hh production matrix element at LHC(14) with 3 ab^-1 yields a 40% uncertainty on this coupling in the SM and a range of 25-80% uncertainties for non-SM values.
description: 4 pages, 7 pages
Quantum quenches from excited states in the Ising chain
Creators: name: Bucciantini, Leda
name: Kormos, Márton
name: Calabrese, Pasquale
Publisher: name: arXiv
Year: 2014
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Quantum Gases (cond-mat.quant-gas)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We consider the non-equilibrium dynamics after a sudden quench of the magnetic field in the transverse field Ising chain starting from excited states of the pre-quench Hamiltonian. We prove that stationary values of local correlation functions can be described by the generalised Gibbs ensemble (GGE). Then we study the full time evolution of the transverse magnetisation by means of stationary phase methods. The equal time two-point longitudinal correlation function is analytically derived for a particular class of excited states for quenches within the ferromagnetic phase, and studied numerically in general. The full time dependence of the entanglement entropy of a block of spins is also obtained analytically for the same class of states and for arbitrary quenches.
description: 35 pages, 7 figures
Demoticus nigricans Rondani 1865
Creators: name: Sforzi, Alessandra
name: Sommaggio, Daniele
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Tachinidae
Demoticus
Demoticus nigricans

description: Demoticus nigricans Rondani, 1865
ORIGINAL DESCRIPTION: 1865c: 220.
TYPE LOCALITY: “ in Alpibus … ad Oropam [Alps … near Oropa (Italy)]”.
TYPE MATERIAL: 1 ♀, syntype (missing left fore-leg), (MZUF: Box 15): Demoticus Mcq. / nigricans Rnd., Alpi / Oropa / 784.
CURRENT STATUS: junior synonym of Masistylum arcuatum (Mik, 1863) (Herting & Dely-Draskovits 1993: 256).
REMARKS: Rondani (1865c: 220) described Demoticus nigricans from just the female sex, without specifying either the number or the length of the specimens. We found one syntype in this study.
description: Published as part of Sforzi, Alessandra & Sommaggio, Daniele, 2021, Catalog of the Diptera types described by Camillo Rondani, pp. 1-438 in Zootaxa 4989 (1) on pages 301-302, DOI: 10.11646/zootaxa.4989.1.1, http://zenodo.org/record/4980621
Impact of strong disorder on the static magnetic properties of the spin-chain compound BaCu2SiGeO7
Creators: name: Shiroka, T.
name: Casola, F.
name: Lorenz, W.
name: Zheludev, A.
name: Ott, H. -R.
name: Mesot, J.
Publisher: name: arXiv
Year: 2013
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: The disordered quasi-1D magnet BaCu2SiGeO7 is considered as one of the best physical realizations of the random Heisenberg chain model, which features an irregular distribution of the exchange parameters and whose ground state is predicted to be the scarcely investigated random-singlet state (RSS). Based on extensive 29Si NMR and magnetization studies of BaCu2SiGeO7, combined with numerical Quantum Monte Carlo simulations, we obtain remarkable quantitative agreement with theoretical predictions of the random Heisenberg chain model and strong indications for the formation of a random-singlet state at low temperatures in this compound. As a local probe, NMR is a well-adapted technique for studying the magnetism of disordered systems. In this case it also reveals an additional local transverse staggered field (LTSF), which affects the low-temperature properties of the RSS. The proposed model Hamiltonian satisfactorily accounts for the temperature dependence of the NMR line shapes.
description: 10 pages, 7 figures
D5.1 Implementing metrics for automated FAIR digital objects assessment in a disciplinary context
Creators: name: Huber, Robert
name: Verburg, Maaike
name: Priddy, Mike
name: L'Hours, Hervé
name: Davidson, Joy
name: Mihai, Hannah
Publisher: name: Zenodo
Year: 2023
Subjects: FAIR
FAIR Data
FAIR-IMPACT
FAIR Data Assessment
Automated Assessment Tool
F-UJI
Social Sciences
Metrics
Discplinary-specific

description: FAIR-IMPACT aims to realise a FAIR EOSC using proven solutions, tools and methods developed during the FAIRsFAIR and other initiatives. One of the goals of the project is to enable the ‘FAIRification’ of different research objects such as datasets, software and semantic artefacts originating from a large range of scientific disciplines. This includes the provision and extension of FAIR assessment metrics and associated tools and their adoption to the needs and requirements of a variety of research communities. In particular FAIRsFAIR data object assessment metrics as well as the F-UJI tool are intended to become more disciplinary-context aware and to include more discipline-specific tests in cooperation with FAIR-IMPACT use case partners, domain data repositories, research infrastructures and e-infrastructures. This deliverable provides the first set of discipline specific tests and metrics developed in cooperation with FAIR-IMPACT Social Sciences and Humanities (SSH) use case partners. We present an analysis of SSH community FAIR-aligned habits and practices carried out using available literature and whitepapers, data collected using standard interfaces provided by the community, as well as FAIR Implementation Profiles (FIPs) from a number of SSH data repositories. Based on this analysis we identified an appropriate SSH sub-community, the social sciences, for which we defined a set of discipline specific metrics and tests derived from the FAIRsFAIR data assessment metrics which are also presented in this deliverable.
Additional file 1 of MALDI-TOF mass spectrometry for sub-typing of Streptococcus pneumoniae
Creators: name: Sivkheng Kann
name: Sao, Sena
name: Chanleakhena Phoeung
name: Youlet By
name: Bryant, Juliet
name: Komurian-Pradel, Florence
name: Vonthanak Saphonn
name: Monidarin Chou
name: Turner, Paul
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Neuroscience
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer

description: Additional file 1. A cluster dendrogram of genotype-organised MALDI-TOF mass spectrum data for 16 serotypes + non-typeable (NT) isolates.
Viscera washing: Advantages and details of a MIRINZ washer
Creators: name: AgResearch MIRINZ
Publisher: name: AgResearch
Year: 2025
Subjects: classificationCode: 30
subject: Agricultural, veterinary and food sciences

description: Perforated rotating drum washers have been accepted worldwide as standard equipment for washing viscera before rendering. MIRINZ studies have shown that the washers have significant dis-advantages for those works using them. This Bulletin outlines major disadvantages of the drum washers and gives details and advantages of a screw conveyor immersion washer developed by the Institute.
Dexia brevipalpis Rondani 1863
Creators: name: Sforzi, Alessandra
name: Sommaggio, Daniele
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Tachinidae
Dexia
Dexia brevipalpis

description: Dexia brevipalpis Rondani, 1863
ORIGINAL DESCRIPTION: 1863: 22.
TYPE LOCALITY: “ Nov. Hollanda [New Holland (= Australia)]”.
TYPE MATERIAL: 1 ♀, syntype (very moldy) (MZUN: Box Muscidae M02, 16): Dexia brevipalpis Rnd., N. Olanda / M. Zool. N° 11959.
CURRENT STATUS: secondary homonym and junior synonym of Senostoma brevipalpe (Macquart, 1846) (Cantrell & Crosskey 1989: 741).
REMARKS: Rondani (1863: 22) described Dexia brevipalpis, without specifying the number, the sex or the length of the specimens, from material received from L. Bellardi. Costa (1866: 33) listed a single MZUN specimen numbered “675”. We also found one syntype in this study.
description: Published as part of Sforzi, Alessandra & Sommaggio, Daniele, 2021, Catalog of the Diptera types described by Camillo Rondani, pp. 1-438 in Zootaxa 4989 (1) on page 302, DOI: 10.11646/zootaxa.4989.1.1, http://zenodo.org/record/4980621
Additional file 1 of Cost utility analysis of cryopreserved amniotic membrane versus topical cyclosporine for the treatment of moderate to severe dry eye syndrome
Creators: name: Voigt, Jeffrey
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Cell Biology
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Additional file 1. CHEERS checklist.
MPEC 2023-V101 : 2023 VZ2
Creators: name: Minor Planet Center Staff
Publisher: name: The Minor Planet Center
Year: 2023
Subjects: subject: Small Solar System bodies
valueUri: http://astrothesaurus.org/uat/1469
subject: 2023 VZ2

description: The Minor Planet Electronic Circulars contain information on unusual minor planets, routine data on comets and natural satellites, and occasional editorial announcements.  They are published on behalf of Division F of the International Astronomical Union by the Minor Planet Center, Smithsonian Astrophysical Observatory, Cambridge, MA 02138, U.S.A.
Young lovers
Creators: name: Brown, Audrey Alexandra, 1904-1998
Publisher: name: University of Victoria Libraries
Year: 2020
Subjects: subject: Canadian poetry
valueUri: http://id.worldcat.org/fast/845173
subject: Authors, Canadian
valueUri: http://id.worldcat.org/fast/821870
subject: Brown, Audrey Alexandra, 1904-1998
valueUri: http://id.worldcat.org/fast/409826
subject: Canadian literature
valueUri: http://id.worldcat.org/fast/845111

description: A typed manuscript page written by Audrey Alexandra Brown, dated March, 1960.
Warm and cold fermionic dark matter via freeze-in
Creators: name: Klasen, Michael
name: Yaguna, Carlos E.
Publisher: name: arXiv
Year: 2013
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The freeze-in mechanism of dark matter production provides a simple and intriguing alternative to the WIMP paradigm. In this paper, we analyze whether freeze-in can be used to account for the dark matter in the so-called singlet fermionic model. In it, the SM is extended with only two additional fields, a singlet scalar that mixes with the Higgs boson, and the dark matter particle, a fermion assumed to be odd under a Z_2 symmetry. After numerically studying the generation of dark matter, we analyze the dependence of the relic density with respect to all the free parameters of the model. These results are then used to obtain the regions of the parameter space that are compatible with the dark matter constraint. We demonstrate that the observed dark matter abundance can be explained via freeze-in over a wide range of masses extending down to the keV range. As a result, warm and cold dark matter can be obtained in this model. It is also possible to have dark matter masses well above the unitarity bound for WIMPs.
description: 19 pages, several figures
Chemo-dynamical evolution of tidal dwarf galaxies. I. Method and IMF dependence
Creators: name: Ploeckinger, S.
name: Hensler, G.
name: Recchi, S.
name: Mitchell, N.
name: Kroupa, P.
Publisher: name: arXiv
Year: 2013
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We present high-resolution simulations of tidal dwarf galaxies (TDG) to investigate their early chemo-dynamical evolution and test their survivability. In this work the simulation setup is introduced and the response of TDGs to self-consistent star formation (SF) and an external tidal field is examined. Throughout the simulation star cluster particles with variable masses down to $5\,M_{\odot}$ form, depending on the local gas reservoir. For low cluster masses $M_{\mathrm{cl}}$, the stellar initial mass function (IMF) is considered to be either filled or truncated at a maximal star mass $m_\mathrm{max}$ to represent the observed $m_{\mathrm{max}} - M_{\mathrm{cl}}$ relation (IGIMF theory). The evolution of TDGs with fully-populated and truncated IMFs are compared to study the impact of stellar energy feedback on their survivability. Both TDGs experience an initial starburst but after a dynamical time they evolve into dwarf galaxies with self-regulated and continuous SF. At this stage the truncated-IMF model contains about 6 times more stellar mass than the invariant IMF models, but the final bound gas mass is comparable in both models. In spite of their significantly different SF histories, both TDG models are not disrupted within the first 500 Myr. We conclude that TDGs can survive an early starburst, independent of the underlying IMF description, even though they do not harbor a stabilizing dark matter halo.
description: 16 pages, 12 figures, accepted for publication in MNRAS
Elomya lugubris Rondani 1861
Creators: name: Sforzi, Alessandra
name: Sommaggio, Daniele
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Tachinidae
Elomya
Elomya lugubris

description: Elomya lugubris Rondani, 1861
ORIGINAL DESCRIPTION: 1861b: 213 (key), 218 (description).
TYPE LOCALITY: “ Paris ” (Robineau-Desvoidy, 1830: 297) [type locality for Elomyia nigra Robineau-Desvoidy, 1830].
TYPE MATERIAL: see remarks.
CURRENT STATUS: junior synonym of Elomya lateralis (Meigen, 1824) (Herting & Dely-Draskovits 1993: 408).
REMARKS: Rondani (1861b: 218) considered the male of Elomyia nebulosa (Panzer, 1798) sensu Robineau-Desvoidy (1830: 296) and sensu Macquart (1833: 203) and the females of Elomya nigra Robineau-Desvoidy, 1830 as belonging to the same species but, instead of applying the Principle of Priority, incorrectly proposed the substitute name Elomya lugubris. It has always been considered as junior synonym of Elomya lateralis (Meigen, 1824) (Bezzi & Stein 1907: 576, Herting & Dely-Draskovits 1993: 408), never as a valid species. The type material for Elomya lugubris will be the same as for the name it was proposed to replace, i. e., Elomya nigra. There is no type of this latter species in the MNHN where the Robineau-Desvoidy’s collection is preserved (Muséum national d’Histoire naturelle 2020). Under the name Elomya lugubris in the MZUF there are four males and five females, and in the MSNC one male and one female (all are non-types). Rondani (1862d: 24) redescribed this nominal species under the generic name “ Elomyia ”, which is an “incorrect subsequent spelling of Elomya Robineau-Desvoidy, 1830 or subsequent usage of Elomyia Macquart, 1834 ” (O’Hara et al. 2011: 80).
description: Published as part of Sforzi, Alessandra & Sommaggio, Daniele, 2021, Catalog of the Diptera types described by Camillo Rondani, pp. 1-438 in Zootaxa 4989 (1) on page 307, DOI: 10.11646/zootaxa.4989.1.1, http://zenodo.org/record/4980621
Convergence of Gaussian quasi-likelihood random fields for ergodic Lévy driven SDE observed at high frequency
Creators: name: Masuda, Hiroki
Publisher: name: arXiv
Year: 2013
Subjects: subject: Statistics Theory (math.ST)
subject: FOS: Mathematics

description: This paper investigates the Gaussian quasi-likelihood estimation of an exponentially ergodic multidimensional Markov process, which is expressed as a solution to a Lévy driven stochastic differential equation whose coefficients are known except for the finite-dimensional parameters to be estimated, where the diffusion coefficient may be degenerate or even null. We suppose that the process is discretely observed under the rapidly increasing experimental design with step size $h_n$. By means of the polynomial-type large deviation inequality, convergence of the corresponding statistical random fields is derived in a mighty mode, which especially leads to the asymptotic normality at rate $\sqrt{nh_n}$ for all the target parameters, and also to the convergence of their moments. As our Gaussian quasi-likelihood solely looks at the local-mean and local-covariance structures, efficiency loss would be large in some instances. Nevertheless, it has the practically important advantages: first, the computation of estimates does not require any fine tuning, and hence it is straightforward; second, the estimation procedure can be adopted without full specification of the Lévy measure.
description: Published in at http://dx.doi.org/10.1214/13-AOS1121 the Annals of Statistics (http://www.imstat.org/aos/) by the Institute of Mathematical Statistics (http://www.imstat.org)
Asymmetry in effective fields of spin-orbit torques in Pt/Co/Pt stacks
Creators: name: Sim, Cheow Hin
name: Huang, Jian Cheng
name: Tran, Michael
name: Eason, Kwaku
Publisher: name: arXiv
Year: 2013
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Measurements of switching via spin-orbit coupling (SOC) mechanisms are discussed for a pair of inverted Pt/Co/Pt stacks with asymmetrical Pt thicknesses. Taking into account the planar Hall effect contribution, effective fields of spin-orbit torques (SOT) are evaluated using lock-in measurements of the first and second harmonics of the Hall voltage. Reversing the stack structure leads to significant asymmetries in the switching behavior, including clear evidence of a nonlinear current dependence of the transverse effective field. Our results demonstrate potentially complex interplay in devices with all-metallic interfaces utilizing SOT.
Locket
Creators: name: Brown, Audrey Alexandra, 1904-1998
Publisher: name: University of Victoria Libraries
Year: 2020
Subjects: subject: Canadian poetry
valueUri: http://id.worldcat.org/fast/845173
subject: Authors, Canadian
valueUri: http://id.worldcat.org/fast/821870
subject: Brown, Audrey Alexandra, 1904-1998
valueUri: http://id.worldcat.org/fast/409826
subject: Canadian literature
valueUri: http://id.worldcat.org/fast/845111

description: A typed manuscript page written by Audrey Alexandra Brown, dated August, 1960.
Dynamical arrest: interplay of the glass and of the gel transitions
Creators: name: Khalil, Nagi
name: Coniglio, Antonio
name: de Candia, Antonio
name: Fierro, Annalisa
name: Ciamarra, Massimo Pica
Publisher: name: arXiv
Year: 2014
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The structural arrest of a polymeric suspension might be driven by an increase of the cross--linker concentration, that drives the gel transition, as well as by an increase of the polymer density, that induces a glass transition. These dynamical continuous (gel) and discontinuous (glass) transitions might interfere, since the glass transition might occur within the gel phase, and the gel transition might be induced in a polymer suspension with glassy features. Here we study the interplay of these transitions by investigating via event--driven molecular dynamics simulation the relaxation dynamics of a polymeric suspension as a function of the cross--linker concentration and the monomer volume fraction. We show that the slow dynamics within the gel phase is characterized by a long sub-diffusive regime, which is due both to the crowding as well as to the presence of a percolating cluster. In this regime, the transition of structural arrest is found to occur either along the gel or along the glass line, depending on the length scale at which the dynamics is probed. Where the two line meet there is no apparent sign of higher order dynamical singularity. Logarithmic behavior typical of $A_{3}$ singularity appear inside the gel phase along the glass transition line. These findings seem to be related to the results of the mode coupling theory for the $F_{13}$ schematic model.
Additional file 2 of MALDI-TOF mass spectrometry for sub-typing of Streptococcus pneumoniae
Creators: name: Sivkheng Kann
name: Sao, Sena
name: Chanleakhena Phoeung
name: Youlet By
name: Bryant, Juliet
name: Komurian-Pradel, Florence
name: Vonthanak Saphonn
name: Monidarin Chou
name: Turner, Paul
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Neuroscience
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer

description: Additional file 2 Characteristics of Random Forest and CART algorithms for serotype- and genotype-associated MALDI-TOF mass spectra from 130 Streptococcus pneumoniae isolates from 16 serotypes (plus non-typeable [NT] isolates) and 46 global pneumococcal sequence clusters (GPSC.
title: Proximal to distal grain-size distribution of basin-floor lobes: A study from the Battfjellet Formation, Central Tertiary Basin, Svalbard
Creators: name:  Spychala ,   Yvonne T.
name:  Ramaaker ,   Thymen A.B.
name:  Eggenhuisen ,  Joris T.
name:  Grundvåg ,   Sten-Andreas
name:  Pohl ,  Florian
name:  Wroblewska ,  Sara
Publisher: name: Deutsche Geologische Gesellschaft - Geologische Vereinigung e.V. (DGGV)
Year: 2021

description: The grain-size distribution of sediment particles is an important aspect of the architecture of submarine fans and lobes. It governs depositional sand quality, and reflects distribution of particulate organic carbon and pollutants. Documenting the grain-size distribution of these deep-marine sedimentary bodies can also offer us an insight in the flows that deposited them. Submarine lobes are commonly assumed to linearly fine from an apex, meaning there should be a proportional relation between grain size and distance from the lobe apex. However, not much detailed quantitative work has been done to test this hypothesis. Exposure of a 5 km long dip-section of basin-floor lobes in Clinoform 12, Battfjellet Formation, Spitsbergen, enable the study of basinward grain-size evolution in lobe deposits. Furthermore, the dataset allows testing if there are any documentable grain-size differences between lobe sub-environments. The results show that fining of lobe deposits occurs predominantly in the most proximal and most distal parts of the lobe, while the intermediate lobe, which is dominated by lobe off-axis deposits, is characterized by a relatively consistent grain-size range. Lobe sub-environments show statistically distinct grain-size distributions from lobe axis to lobe fringe. An explanation for these trends is the interplay of capacity and competence-driven deposition with the grain-size stratification of the flows. The outcomes of this study help to better understand the proximal to distal evolution of turbidity currents and their depositional patterns. They also provide important insights in reservoir potential of basin-floor fans at lobe scale.
Elomya umbripennis Rondani 1861
Creators: name: Sforzi, Alessandra
name: Sommaggio, Daniele
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Tachinidae
Elomya
Elomya umbripennis

description: Elomya umbripennis Rondani, 1861
ORIGINAL DESCRIPTION: 1861b: 214 (key), 218 (description).
TYPE LOCALITY: “ in agri parmensis collibus [Parmese hills (Italy)]”.
TYPE MATERIAL: 2 ♂♂, syntypes (one missing right fore-leg) (MZUF: Box 17): Elomyia [sic!] Desv. / umbripennis Rnd. / 935; 1 ♂, syntype (MZUF: Box C): Elomyia [sic!] umbripennis R., 338, ♂, Apenn. [= Apennines] / 393 338; 1 ♂, syntype (MSNC: Box DIPTERA Ex collezione Rondani - I): Elomya Desv. umbripennis R. 159 ♂ Parma / Coll. Rondani, scatola n° 2, posiz. F-4 / Museo di Storia Naturale Università di Pisa, Calci (PI) ex collezione Rondani.
CURRENT STATUS: junior synonym of Elomya lateralis (Meigen, 1824) (Herting & Dely-Draskovits 1993: 408).
REMARKS: Rondani (1861b: 218) described Elomya umbripennis from just the male sex, without specifying the exact number of specimens and not giving a range of lengths: “ Foeminas non cognovi, forte ab aliis specierum affinium non distinguendas [I did not know females, perhaps indistinguishable from similar species]”. We found four syntypes in this study.
description: Published as part of Sforzi, Alessandra & Sommaggio, Daniele, 2021, Catalog of the Diptera types described by Camillo Rondani, pp. 1-438 in Zootaxa 4989 (1) on page 307, DOI: 10.11646/zootaxa.4989.1.1, http://zenodo.org/record/4980621