cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 5 of Reduced and highly diverse peripheral HIV-1 reservoir in virally suppressed patients infected with non-B HIV-1 strains in Uganda
Creators: name: Joussef-Piña, Samira
name: Nankya, Immaculate
name: Nalukwago, Sophie
name: Baseke, Joy
name: Rwambuya, Sandra
name: Winner, Dane
name: Kyeyune, Fred
name: Chervenak, Keith
name: Thiel, Bonnie
name: Asaad, Robert
name: Dobrowolski, Curtis
name: Luttge, Benjamin
name: Lawley, Blair
name: Kityo, Cissy M.
name: Boom, W. Henry
name: Karn, Jonathan
name: Quiñones-Mateu, Miguel E.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Statistics
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: FOS: Biological sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 5: Figure S4. Validation of the EDITS assay. Memory CD4+ T cells from five ART-experienced, well-suppressed (plasma HIV-1 RNA load < 20 copies/ml) individuals infected with HIV-1 subtype B strains in Cleveland, OH were used to quantify the peripheral HIV-1 reservoir using the EDITS assay, proviral DNA deep sequencing assay, and a dPCR test designed to quantify proviral DNA as described in “Methods” section. Linear dynamic ranges and regression values (Pearson’s coefficient correlation) describing the relationship between the size of the HIV-1 reservoir quantified by each assay are indicated. r, correlation coeficient; p, two-tailed p value.
New analytic solutions of the collective Bohr hamiltonian for a beta-soft, gamma-soft axial rotor
Creators: name: Fortunato, Lorenzo
name: Vitturi, Andrea
Publisher: name: arXiv
Year: 2003
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: New analytic solutions of the quadrupole collective Bohr hamiltonian are proposed, exploiting an approximate separation of the beta and gamma variables to describe gamma-soft prolate axial rotors. The model potential is a sum of two terms: a beta-dependent term taken either with a Coulomb-like or a Kratzer-like form, and a gamma-dependent term taken as an harmonic oscillator. In particular it is possible to give a one parameter paradigm for a beta-soft, gamma-soft axial rotor that can be applied, with a considerable agreement, to the spectrum of 234U.
description: (Dipartimento di Fisica ``G.Galilei'' and INFN, via Marzolo 8, I-35131 Padova, Italy) 10 pages, 3 figures
A stochastic golden rule and quantum Langevin equation for the low density limit
Creators: name: Accardi, L.
name: Pechen, A. N.
name: Volovich, I. V.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Mathematical Physics (math-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: A rigorous derivation of quantum Langevin equation from microscopic dynamics in the low density limit is given. We consider a quantum model of a microscopic system (test particle) coupled with a reservoir (gas of light Bose particles) via interaction of scattering type. We formulate a mathematical procedure (the so-called stochastic golden rule) which allows us to determine the quantum Langevin equation in the limit of large time and small density of particles of the reservoir. The quantum Langevin equation describes not only dynamics of the system but also the reservoir. We show that the generator of the corresponding master equation has the Lindblad form of most general generators of completely positive semigroups.
Additional file 1 of Light-triggered multifunctional nanoplatform for efficient cancer photo-immunotherapy
Creators: name: Yue, Juan
name: Mei, Qian
name: Wang, Panyong
name: Miao, Peng
name: Dong, Wen-Fei
name: Li, Li
Publisher: name: figshare
Year: 2022
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 1. Experimental Section. Fig S1. Characterization of MPSNs. Fig S2. Fluorescence stability of MPSNs. Fig S3. The generation of singlet oxygen of MPSNs determined by the increased SOSG fluorescence. Fig S4. Cytotoxicity of MPSNs. Fig S5. 4T1 cell viability. Fig S6. CLSM images of 4T1 cells stained with Calcein-AM and PI. Fig S7. 4T1 cell viabilities after different treatments. Fig S8. A Photothermal imaging after intravenous injection of saline, MPSNs and MPSNs@R837 in tumor-bearing mice. B Photothermal heating curves. C The ex vivo fluorescence images of tumors and major organs. Fig S9. Representative H&E staining images of heart, liver, spleen, lung, and kidney. Fig S10. Change of body weights of mice after different treatments; Serum biochemistry indicators. Fig S11. A Tumor volume. B-D cytokine levels of TNF-α, INF-γ and IL-12 in sera from mice. Fig S12. Change of body weights of mice after different treatments; Serum biochemistry indicators. Fig S13. Representative H&E staining images of heart, liver, spleen, and kidney. Fig S14. Tumor volume of A primary and (B) distant tumors of each group. C the images of tumors. Fig S15. Representative immunofluorescence staining for CD8a (green) and IFN-γ (red) of spleen sections. Fig S16. A-C cytokine levels of TNF-α, INF-γ and IL-12 in sera from mice. Fig S17. Representative H&E staining images. Fig S18. Change of body weights of mice after different treatments; Serum biochemistry indicators.
Additional file 1 of Core promoter mutation contributes to abnormal gene expression in bladder cancer
Creators: name: Huang, Teng
name: Li, Jiaheng
name: Wang, San Ming
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Fig S1. Sequence chromatograms of three core promoter mutations. A. Mutation T > C/TC > CA (chr1:152,681,543-152,681,544) in core promoter of LCE4A occurred in 79 out of 80 reads in a sample. B. Mutation A > G/AG > GA (chr1:20,915,531-20,915,532) in core promoter of CDA occurred in 28 out of 68 reads in a sample. C. Mutation C > G (chr11:75,110,552-75,110,552) in core promoter of RPS3 occurred in 17 out of 77 reads in a sample. Top line: reference sequences; other lines: sequence reads mapped to the reference sequences; base marked in red: the base different from the reference sequences; arrow: the mutated base identified by sequence alignment.
Cephaloleia ornata Waterhouse 1881
Creators: name: Sekerka, Lukáš
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Cephaloleia
Cephaloleia ornata

description: Cephaloleia ornata Waterhouse, 1881 (Imatidiini)
 Published record. Boraceia (Sඍൺංඇൾඌ +| Gൺඋർටൺ-Rඈൻඅൾൽඈ 2014).
 Distribution. Bolivia,? Brazil (Pará), Colombia, Ecuador, Peru, and Venezuela.
 Remarks. Sඍൺංඇൾඌ +|Gൺඋർටൺ-Rඈൻඅൾൽඈ (2014) recorded this species from Brazil for the first time but did not formally mention that. They published material from Taperina, which was unassigned to the state, and then from Boraceia in the state of São Paulo. I did not have the opportunity to examine this material but based on the presently known distribution, the species is found in the Upper Amazon basin including foothills of the Andes and thus its occurrence in São Paulo is very improbable. In general, any species of the group, where C. ornata belongs does not occur in eastern Brazil. Therefore, the material must have been either mislabelled or misidentified, and C. ornata is removed from the fauna of São Paulo.
 On the other hand, occurrence of C. ornata in the Brazilian Amazon is probable. As for the other specimen(s), Taperina is most likely an alternative spelling of Taperinha, which is close to Santarém in Pará. However, Sඍൺංඇൾඌ +| Gൺඋർටൺ-Rඈൻඅൾൽඈ (2014) did not provide any additional data for this specimen(s), thus it would be necessary to verify the labels and identification to confirm the occurrence of C. ornata in Brazil. For now, I leave the distribution in Brazil with a question mark.
description: Published as part of Sekerka, Lukáš, 2020, Commented catalogue of Cassidinae (Coleoptera: Chrysomelidae) of the state of São Paulo, Brazil, with remarks on the collection of Jaro Mráz in the National Museum in Prague, pp. 667-707 in Acta Entomologica Musei Nationalis Pragae (Acta. Ent. Mus. Natl. Pragae) (Acta. Ent. Mus. Natl. Pragae) 60 (2) on page 701, DOI: 10.37520/aemnp.2020.048, http://zenodo.org/record/5178055
Lingula Bruguiere 1797
Creators: name: Bitner, Maria Aleksandra
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Brachiopoda
Lingulata
Lingulida
Lingulidae
Lingula

description: Genus Lingula Bruguière, 1797
TYPE SPECIES. — Lingula anatina Lamarck, 1801, by designation of ICZN (1985).
description: Published as part of Bitner, Maria Aleksandra, 2008, New data on the recent brachiopods from the Fiji and Wallis and Futuna islands, South-West Pacific, pp. 419-461 in Zoosystema 30 (2) on page 422, DOI: 10.5281/zenodo.5392933
MOESM1 of A cluster randomized trial to measure the impact on nonsteroidal anti-inflammatory drug and proton pump inhibitor prescribing in Italy of distributing cost-free paracetamol to osteoarthritic patients
Creators: name: Vicentini, Massimo
name: Mancuso, Pamela
name: Rossi, Paolo Giorgi
name: Pede, Sara Di
name: Pellati, Morena
name: Gandolfi, Alberto
name: Zoboli, Daniela
name: RiccÃ², Daniela
name: Busani, Corrado
name: Ferretti, Alessandra
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Additional file 1. questionnaire for GP.
Placing quantified variants of 3-SAT and Not-All-Equal 3-SAT in the polynomial hierarchy
Creators: name: Döcker, Janosch
name: Dorn, Britta
name: Linz, Simone
name: Semple, Charles
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computational Complexity (cs.CC)
subject: FOS: Computer and information sciences

description: The complexity of variants of 3-SAT and Not-All-Equal 3-SAT is well studied. However, in contrast, very little is known about the complexity of the problems' quantified counterparts. In the first part of this paper, we show that $\forall \exists$ 3-SAT is $Π_2^P$-complete even if (1) each variable appears exactly twice unnegated and exactly twice negated, (2) each clause is a disjunction of exactly three distinct variables, and (3) the number of universal variables is equal to the number of existential variables. Furthermore, we show that the problem remains $Π_2^P$-complete if (1a) each universal variable appears exactly once unnegated and exactly once negated, (1b) each existential variable appears exactly twice unnegated and exactly twice negated, and (2) and (3) remain unchanged. On the other hand, the problem becomes NP-complete for certain variants in which each universal variable appears exactly once. In the second part of the paper, we establish $Π_2^P$-completeness for $\forall \exists$ Not-All-Equal 3-SAT even if (1') the Boolean formula is linear and monotone, (2') each universal variable appears exactly once and each existential variable appears exactly three times, and (3') each clause is a disjunction of exactly three distinct variables that contains at most one universal variable. On the positive side, we uncover variants of $\forall \exists$ Not-All-Equal 3-SAT that are co-NP-complete or solvable in polynomial time.
description: 36 pages; reference corrected in introduction (the result of Karpinski and Piecuch establishes NP-completeness of Not-All-Equal 3-SAT if each variable appears *at most* four times)
Cephaloleia ornatula Donckier 1899
Creators: name: Sekerka, Lukáš
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Cephaloleia
Cephaloleia ornatula

description: Cephaloleia ornatula Donckier, 1899 (Imatidiini)
 Distribution. Brazil (Rio de Janeiro).
 Remarks. Until recently, this species was known only based on two syntypes with locality data ‘America Meridional’. Sඍൺංඇൾඌ +| Gൺඋർටൺ-Rඈൻඅൾൽඈ (2014) published two specimens from the state of Rio de Janeiro; however, in the line with the species distribution São Paulo only is mentioned. This is obviously a mistake and the species should not be listed as present in São Paulo because there is no formal record. The other possibility would be that they recorded C. ornata from São Paulo and placed the record under the wrong name.
description: Published as part of Sekerka, Lukáš, 2020, Commented catalogue of Cassidinae (Coleoptera: Chrysomelidae) of the state of São Paulo, Brazil, with remarks on the collection of Jaro Mráz in the National Museum in Prague, pp. 667-707 in Acta Entomologica Musei Nationalis Pragae (Acta. Ent. Mus. Natl. Pragae) (Acta. Ent. Mus. Natl. Pragae) 60 (2) on page 701, DOI: 10.37520/aemnp.2020.048, http://zenodo.org/record/5178055
From Long to Short Distances in Perturbative QCD
Creators: name: Sterman, George
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Infrared safe differential cross sections, such as event shape distributions, can be measured over wide kinematic ranges, from regions where fixed order calculations are adequate to regions where nonperturbative dynamics dominate. Such observables provide an ideal laboratory for the study of the transition between weak and strong coupling in quantum field theory. This talk begins with some of the fundamentals of the perturbative description of QCD and the basis of resummation techniques, followed by a brief discussion of selected topics from recent fixed-order and resummed calculations. It focuses on how resummed perturbation theory has been used to deduce the structure of nonperturbative corrections, and to provide a framework with which to address the transition from short- to long-distance dynamics in QCD.
description: 24 pages, eight eps figures. Based on talks presented at the International Conference on Theoretical Physics, TH2002, Paris, UNESCO, July 22-27, 2002, and the 26th Johns Hopkins Workshop on Current Problems in Particle Theory, Heidelberg, Aug. 1-3, 2002
Extention cohomological fields theories and noncommutative Frobenius manifolds
Creators: name: Natanzon, S. M.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Mathematical Physics (math-ph)
subject: High Energy Physics - Theory (hep-th)
subject: Algebraic Geometry (math.AG)
subject: FOS: Physical sciences
subject: FOS: Mathematics
subject: 81T, 18F

description: We construct some extension ({\it Stable Field Theory}) of Cohomological Field Theory. The Stable Field Theory is a system of homomorphisms to some vector spaces generated by spheres and disks with punctures. It is described by a formal tensor series, satisfying to some system of "differential equations". In points of convergence the tensor series generate special noncommutative analogues of Frobenius algebras, describing 'Open-Closed' Topological Field Theories.
description: 19 pages, LaTex
Additional file 1 of Pericyte, but not astrocyte, hypoxia inducible factor-1 (HIF-1) drives hypoxia-induced vascular permeability in vivo
Creators: name: Baumann, Julia
name: Tsao, Chih-Chieh
name: Patkar, Shalmali
name: Huang, Sheng-Fu
name: Francia, Simona
name: Magnussen, Synnøve Norvoll
name: Gassmann, Max
name: Vogel, Johannes
name: Köster-Hegmann, Christina
name: Ogunshola, Omolara O.
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology

description: Additional file 1: Figure S1. Characterization of the transgenic mouse lines. (A) Flowchart of experimental setup including tamoxifen injection, exposure duration and endpoint measurements. (B) Hematocrit levels in SMMHC-CreERT2; HIF-1αfl/fl (blue), GFAP-CreERT2; HIF-1αfl/fl (light green) and GLAST-CreERT2;HIF-1αfl/fl (dark green) mice treated with oil (Ctrl) or tamoxifen (LoF) after exposure to 96 h normoxia (Nx, 21% O2) or hypoxia (Hx, 8% O2). Two-way ANOVA, mean ± SD, n = 3–8, ****p
Novocrania Lee & Brunton 2001
Creators: name: Bitner, Maria Aleksandra
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Brachiopoda
Craniata
Craniida
Craniidae
Novocrania

description: Genus Novocrania Lee & Brunton, 2001
TYPE SPECIES. — Patella anomala Müller, 1776, by original designation (Lee & Brunton 1986: 150).
description: Published as part of Bitner, Maria Aleksandra, 2008, New data on the recent brachiopods from the Fiji and Wallis and Futuna islands, South-West Pacific, pp. 419-461 in Zoosystema 30 (2) on page 424, DOI: 10.5281/zenodo.5392933
The Influence of Social Networks on Food Choices in College Food Courts
Creators: name: Wang, Dan
name: Grebitus, Carola
name: Schroeter, Christiane
name: Wang, Dan
name: Grebitus, Carola
name: Schroeter, Christiane
Publisher: name: Unknown
Year: 2014
Subjects: subject: Consumer/Household Economics
subject: Health Economics and Policy
subject: Institutional and Behavioral Economics
subject: buffet
subject: calorie labeling
subject: menu labeling
subject: obesity
subject: peers
subject: students

description: Obesity is still on the rise, leading to high costs for the obese individual itself but also for society. We analyze the influence of peer effects on food choices in lunchrooms with posted nutrition facts. Data were collected in a lunchroom at a large U.S. university. Groups of four patrons each were interviewed for a total of 112 observations. Among others, results for calories consumed from pizza and pasta show that individuals who are dining in groups with at least one obese group member are taking in more calories. Looking at nutrition facts when ordering the food decreases calorie intake. The results suggest that dining with obese peers increases the probability of obesity while calorie labeling decreases the probability. In terms of nutrition signposting this is a promising result. However, only 15% of the sample had used the nutrition facts to make all their food choice, which leads to the conclusion that overall attention to nutrition labeling needs to be increased.
Composite Gravitons from Metric-Independent Quantum Field Theories
Creators: name: Carone, Christopher D.
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We review some recent work by Carone, Erlich and Vaman on composite gravitons in metric-independent quantum field theories, with the aim of clarifying a number of basic issues. Focusing on a theory of scalar fields presented previously in the literature, we clarify the meaning of the tunings required to obtain a massless graviton. We argue that this formulation can be interpreted as the massless limit of a theory of massive composite gravitons in which the graviton mass term is not of Pauli-Fierz form. We then suggest closely related theories that can be defined without such a limiting procedure (and hence without worry about possible ghosts). Finally, we comment on the importance of finding a compelling ultraviolet completion for models of this type, and discuss some possibilities.
description: 17 pages LaTeX, 4 figures. Invited Brief Review for Modern Physics Letters A
MOESM1 of Differentiated models of service delivery for antiretroviral treatment of HIV in sub-Saharan Africa: a rapid review protocol
Creators: name: Long, Lawrence
name: Kuchukhidze, Salome
name: Pascoe, Sophie
name: Nichols, Brooke
name: Refiloe Cele
name: Govathson, Caroline
name: Huber, Amy
name: Flynn, David
name: Rosen, Sydney
Publisher: name: figshare
Year: 2019
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Computational Biology

description: Additional file 1. Registration in PROSPERO. https://www.crd.york.ac.uk/PROSPERO/display_record.php?RecordID=118230.
Semiclassical properties and chaos degree for the quantum baker's map
Creators: name: Inoue, K.
name: Ohya, M.
name: Volovich, I. V.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Quantum Physics (quant-ph)
subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: Chaotic Dynamics (nlin.CD)
subject: FOS: Physical sciences

description: We study the chaotic behaviour and the quantum-classical correspondence for the baker's map. Correspondence between quantum and classical expectation values is investigated and it is numerically shown that it is lost at the logarithmic timescale. The quantum chaos degree is computed and it is demonstrated that it describes the chaotic features of the model. The correspondence between classical and quantum chaos degrees is considered.
description: 30 pages, 4 figures, accepted for publication in J. Math. Phys
A note on universal operators between separable Banach spaces
Creators: name: Garbulińska-Wegrzyn, Joanna
name: Kubiś, Wieslaw
Publisher: name: arXiv
Year: 2019
Subjects: subject: Functional Analysis (math.FA)
subject: FOS: Mathematics

description: We compare two types of universal operators constructed relatively recently by Cabello Sánchez, and the authors. The first operator $Ω$ acts on the Gurarii space, while the second one $P_S$ has values in a fixed separable Banach space $S$. We show that if $S$ is the Gurarii space, then both operators are isometric. We also prove that, for a fixed space $S$, the operator $P_S$ is isometrically unique. Finally, we show that $Ω$ is generic in the sense of a natural infinite game.
description: 12 pages
Xenobrochus Cooper 1981
Creators: name: Bitner, Maria Aleksandra
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Brachiopoda
Rhynchonellata
Terebratulida
Dyscoliidae
Xenobrochus

description: Genus Xenobrochus Cooper, 1981
TYPE SPECIES. — Gryphus africanus Cooper, 1973b, by original designation (Cooper 1981: 19).
description: Published as part of Bitner, Maria Aleksandra, 2008, New data on the recent brachiopods from the Fiji and Wallis and Futuna islands, South-West Pacific, pp. 419-461 in Zoosystema 30 (2) on page 429, DOI: 10.5281/zenodo.5392933
MOESM3 of Human gene expression variability and its dependence on methylation and aging
Creators: name: Bashkeel, Nasser
name: Perkins, Theodore
name: KÃ¦Rn, Mads
name: Lee, Jonathan
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3. Complete list of GO term treemaps for all genes
The Evolution of the California Blueberry Industry: A Social Network Analysis Approach
Creators: name: Plakias, Zoe T.
name: Plakias, Zoe T.
Publisher: name: Unknown
Year: 2014
Subjects: Agricultural and Food Policy
Crop Production/Industries

description: In this paper, I estimate local and industry peer effects related to the adoption of blueberries as a crop among California growers. I employ publicly available data from the California Department of Pesticide Regulation for the years 2001 through 2011. Geographic and inter-industry network analyses complement the econometric estimation and provide greater insight into the patterns of peer effects. Industry peer effects (i.e. those connections to other growers through growing crops other than blueberries) have a positive and statistically significant effect on the probability of adopting blueberries. Local effects play a significant, though seemingly less important, role. The geographic and social network analyses corroborate these results and provide greater depth. I find this type of analysis can over some insight about crop adoption without the expense necessary for most social network studies.
Analytic calculation of color-Coulomb potential and color confinement
Creators: name: Zwanziger, Daniel
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We develop a calculational scheme in Coulomb and temporal gauge that respects gauge invariance and is most easily applied to the infrared asymptotic region of QCD. It resembles the Dyson-Schwinger equations of Euclidean quantum field theory in Landau gauge, but is 3-dimensional. A simple calculation yields a color-Coulomb potential that behaves at large $R$ approximately like $V_{\rm coul}(R) \sim R^{[1-0.2(d-1)]}$ for spatial dimension $1 \leq d \leq 3$. This is a linearly rising potential plus a rather weak dependence on $d$.
description: 12 pages
Elasticity of Export Demand for Australian Sugar: Accounting for Regional and Seasonal Effects
Creators: name: Longmire, James L.
name: Males, Warren P.
name: Longmire, James L.
name: Males, Warren P.
Publisher: name: Unknown
Year: 1997
Subjects: subject: Marketing
subject: FOS: Economics and business

description: The elasticity of export demand for Australian sugar is an important measure for devising sugar export marketing strategies and considering the impact of various policies on the industry. Updated and more explicit elasticities of export demand for Australian sugar are reported in this paper. The elasticities are calculated using an adaptation of the formula approach published by Cronin (1979). Initially elasticities are reported for Australia without accounting for regional and seasonal effects. These effects are then introduced and the consequences for the revised elasticities are analysed. The importance of export market share by region and season is emphasised. Comparisons of the elasticities with other studies highlight the value of the formula approach to deriving export demand elasticities.
Oxychalepus posticatus Chalepini
Creators: name: Sekerka, Lukáš
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Oxychalepus
Oxychalepus posticatus

description: Oxychalepus posticatus (Baly, 1885) (Chalepini)
 Published record. Santos (Wൾංඌൾ 1921, Sඍൺංඇൾඌ 2010).
 Distribution. Costa Rica, Nicaragua, and Panama.
 Remarks. The species was recorded only once from Santos in São Paulo based on historic material (Wൾංඌൾ 1921). Sඍൺංඇൾඌ (2010) repeated part of the same material. Otherwise, the species is known only from the southern part of Central America. Such disjunct distribution is very improbable and thus O. posticatus is removed from the fauna of Brazil.
  Paraselenis (Pseudechoma) marginipennis
description: Published as part of Sekerka, Lukáš, 2020, Commented catalogue of Cassidinae (Coleoptera: Chrysomelidae) of the state of São Paulo, Brazil, with remarks on the collection of Jaro Mráz in the National Museum in Prague, pp. 667-707 in Acta Entomologica Musei Nationalis Pragae (Acta. Ent. Mus. Natl. Pragae) (Acta. Ent. Mus. Natl. Pragae) 60 (2) on page 702, DOI: 10.37520/aemnp.2020.048, http://zenodo.org/record/5178055
Learning from Irregularly Sampled Data for Endomicroscopy Super-resolution: A Comparative Study of Sparse and Dense Approaches
Creators: name: Szczotka, Agnieszka Barbara
name: Shakir, Dzhoshkun Ismail
name: DanieleRavi
name: Clarkson, Matthew J.
name: Pereira, Stephen P.
name: Vercauteren, Tom
Publisher: name: arXiv
Year: 2019
Subjects: subject: Image and Video Processing (eess.IV)
subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Computer and information sciences

description: Purpose: Probe-based Confocal Laser Endomicroscopy (pCLE) enables performing an optical biopsy, providing real-time microscopic images, via a probe. pCLE probes consist of multiple optical fibres arranged in a bundle, which taken together generate signals in an irregularly sampled pattern. Current pCLE reconstruction is based on interpolating irregular signals onto an over-sampled Cartesian grid, using a naive linear interpolation. It was shown that Convolutional Neural Networks (CNNs) could improve pCLE image quality. Although classical CNNs were applied to pCLE, input data were limited to reconstructed images in contrast to irregular data produced by pCLE. Methods: We compare pCLE reconstruction and super-resolution (SR) methods taking irregularly sampled or reconstructed pCLE images as input. We also propose to embed a Nadaraya-Watson (NW) kernel regression into the CNN framework as a novel trainable CNN layer. Using the NW layer and exemplar-based super-resolution, we design an NWNetSR architecture that allows for reconstructing high-quality pCLE images directly from the irregularly sampled input data. We created synthetic sparse pCLE images to evaluate our methodology. Results: The results were validated through an image quality assessment based on a combination of the following metrics: Peak signal-to-noise ratio, the Structural Similarity Index. Conclusion: Both dense and sparse CNNs outperform the reconstruction method currently used in the clinic. The main contributions of our study are a comparison of sparse and dense approach in pCLE image reconstruction, implementing trainable generalised NW kernel regression, and adaptation of synthetic data for training pCLE SR.
Additional file 4 of Reduced and highly diverse peripheral HIV-1 reservoir in virally suppressed patients infected with non-B HIV-1 strains in Uganda
Creators: name: Joussef-Piña, Samira
name: Nankya, Immaculate
name: Nalukwago, Sophie
name: Baseke, Joy
name: Rwambuya, Sandra
name: Winner, Dane
name: Kyeyune, Fred
name: Chervenak, Keith
name: Thiel, Bonnie
name: Asaad, Robert
name: Dobrowolski, Curtis
name: Luttge, Benjamin
name: Lawley, Blair
name: Kityo, Cissy M.
name: Boom, W. Henry
name: Karn, Jonathan
name: Quiñones-Mateu, Miguel E.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Statistics
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: FOS: Biological sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 4: Figure S3. Analytical sensitivity of the EDITS assay. Jurkat E4, a cell line latently infected with a single copy of HIV-1 per cell, and Jurkat E6-1, an HIV-negative human T cell lymphoblast, were quantified and serial dilutions were used to prepare ten mixtures containing 0 to 400 Jurkat E4 cells in a background of one million Jurkat E6-1 cells in eight biological replicates. Cell mixtures were activated and cell-associated spliced HIV-1 RNA and proviral DNA quantified using EDITS assay as described in “Methods” section. Heatmaps indicate the number of HIV-1 vpu/end reads in each of the eight cell mixture replicates. Linear dynamic ranges and regression values (Pearson’s coefficient correlation) describing the relationship between mapped vpu/env reads and number of HIV positive cells in the mixtures are indicated. Median mapped reads and interquartile range are depicted.r, correlation coeficient; p, two-tailed p value.
Additional file 1 of Antiprogestins reduce epigenetic field cancerization in breast tissue of young healthy women
Creators: name: Bartlett, Thomas E.
name: Evans, Iona
name: Jones, Allison
name: Barrett, James E.
name: Haran, Shaun
name: Reisel, Daniel
name: Papaikonomou, Kiriaki
name: Jones, Louise
name: Herzog, Chiara
name: Pashayan, Nora
name: Simões, Bruno M.
name: Clarke, Robert B.
name: Evans, D. Gareth
name: Ghezelayagh, Talayeh S.
name: Ponandai-Srinivasan, Sakthivignesh
name: Boggavarapu, Nageswara R.
name: Lalitkumar, Parameswaran G.
name: Howell, Sacha J.
name: Risques, Rosa Ana
name: Rådestad, Angelique Flöter
name: Dubeau, Louis
name: Gemzell-Danielsson, Kristina
name: Widschwendter, Martin
Publisher: name: figshare
Year: 2022
Subjects: Medicine
Cell Biology
Pharmacology
Cancer

description: Additional file 1: Supplementary Methods. Fig. S1. Elevated levels of estradiol and progesterone in BRCA1 and BRCA2 mutation carriers compared to controls. Fig. S2. Epithelial cell composition in normal tissues adjacent to TNBC compared to cancer-free breasts. Fig. S3. Enrolment and randomisation in Clinical Trial 1. Fig. S4. Enrolment and randomisation in Clinical Trial 2. Fig. S5. Enrolment in Clinical Trial 3. Fig. S6. Effect of mifepristone treatment on breast epithelium cell subtype composition. Fig. S7. Effect of mifepristone treatment on breast epithelium cell subtype composition – RNA-seq data. Fig. S8. The WID-Breast5 index. Fig. S9. The Ki67 index. Fig. S10. Comparing the Ki67 index with the WID-Breast29 index. Fig. S11. Comparing the change (before and after ulipristal acetate) in percentage of immunohistochemistry Ki67-positive cell with change in Ki67-index in DNAme Dataset 4 (Clinical trial 3, ‘A pilot prevention study of the effects of the anti- progestin Ulipristal Acetate (UA) on surrogate markers of breast cancer risk’). Table S1a. Summary statistics about the 20 healthy women (12 BRCA1 mutation carriers and 8 BRCA1 wild type) enrolled in the trial to measure estradiol and progesterone levels throughout the menstrual cycle (see also Figs. 1 and 2). Table S1b. Summary statistics about the 21 healthy BRCA mutation carriers enrolled in Clincal Trial 2 who provided samples for DNAme analysis as part of DNAme Set 3. Table S2. The 37 WID-Breast29 CpGs. Table S3. Summary statistics about the donors of the breast cancer biopsies and matched surrounding normal tissue samples. Table S4. The reference CpGs identified for luminal progenitor, mature luminal, and basal breast epithelial cells. Table S5. Summary statistics about the 15 healthy women who provided samples for RT-PCR and RNA-seq before and after mifepristone treatment.
Popping out the Higgs boson off vacuum at Tevatron and LHC
Creators: name: Boonekamp, M.
name: Peschanski, R.
name: Royon, C.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: In the prospect of diffractive Higgs production at the LHC collider, we give an extensive study of Higgs boson, dijet, diphoton and dilepton production at hadronic colliders via diffraction at both hadron vertices. Our model, based on non factorizable Pomeron exchange, describes well the observed dijet rate observed at Tevatron Run I. Taking the absolute normalization from data, our predictions are given for diffractive processes at Tevatron and LHC. Stringent tests of our model and of its parameters using data being taken now at Tevatron Run II are suggested. These measurements will also allow to discriminate between various models and finally to give precise predictions on diffractive Higgs boson production cross-section at the LHC.
description: 27 pages, 16 figures. Published version, incorporating corrections listed in the Erratum to appear
Sternostena varians Weise 1910
Creators: name: Sekerka, Lukáš
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Sternostena
Sternostena varians

description: Sternostena varians Weise, 1910 (Chalepini)
 Published record. São Paulo (Mඈඇඋඬඌ +| Vංൺඇൺ 1947).
 Distribution. Argentina, Brazil (Minas Gerais, Rio de Janeiro, Santa Catarina, São Paulo), Peru, Suriname, and Trinidad and Tobago.
 Remarks. Mඈඇඋඬඌ +| Vංൺඇൺ (1947) mentioned occurrence in São Paulo for S. varians ab. apicalis Weise, 1910; however, this record probably refers to the material published by UΗආൺඇඇ (1932) as S. varians ab. triangularis and thus the species Sternostena varians Weise, 1910 was never recorded from São Paulo, although its occurrence there is possible.
description: Published as part of Sekerka, Lukáš, 2020, Commented catalogue of Cassidinae (Coleoptera: Chrysomelidae) of the state of São Paulo, Brazil, with remarks on the collection of Jaro Mráz in the National Museum in Prague, pp. 667-707 in Acta Entomologica Musei Nationalis Pragae (Acta. Ent. Mus. Natl. Pragae) (Acta. Ent. Mus. Natl. Pragae) 60 (2) on page 702, DOI: 10.37520/aemnp.2020.048, http://zenodo.org/record/5178055
Fallax Atkins 1960
Creators: name: Bitner, Maria Aleksandra
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Brachiopoda
Rhynchonellata
Terebratulida
Aulacothyropsidae
Fallax

description: Genus Fallax Atkins, 1960
TYPE SPECIES. — Fallax dalliniformis Atkins, 1960, by original designation (Atkins 1960: 72).
Fallax neocaledonensis Laurin, 1997 (Fig. 10 H-J)
Campages furcifera – d’Hondt 1987: 37, pl. 1, figs 1-4.
Fallax neocaledonensis Laurin, 1997: 444-448, figs 31-34, 46a-o. — Bitner 2006b: 27, fig. 5a-c.
Laurinia neocaledonensis – Zezina 2005: 31, 32.
MATERIAL EXAMINED. — Fiji. BORDAU 1, Lau Ridge, stn CP 1458, 1 complete specimen.
DEPTH RANGE. — 1216-1226 m.
MEASUREMENTS. — Length 15.5 mm, width 14.4 mm, thickness 10.2 mm.
REMARKS
Fallax neocaledonensis was originally described from the New Caledonia region where it is one of the most common species (Laurin 1997; and pers. obs.). However, in the studied material it is very rare, although it has already been reported from the Fiji region (Bitner 2006b). Fallax neocaledonensis is characterized by its widely triangular outline. Although externally similar to the dallinine brachiopods, it is easily distinguishable internally by the presence of distinct dental plates.
The specimens described earlier from the New Caledonia region by d’Hondt (1987) as Campages furcifera Hedley, 1905, after examination of internal structures, appeared to possess distinct dental plates, which exclude them from Campages. On the contrary, they display all the characters typical of F. neocaledonensis and have been synonymised with the latter species in the present paper.
Recently Zezina (2005) transferred the species F.neocaledonensis into a new genus Laurinia, based on the absence of spicules in the specimens investigated by her from the Norfolk Ridge, New Caledonia, because spicules are observed in Fallax. It seems doubtful whether absence of spicules in a genus characterized by weak spiculation is sufficient to create a new genus.
description: Published as part of Bitner, Maria Aleksandra, 2008, New data on the recent brachiopods from the Fiji and Wallis and Futuna islands, South-West Pacific, pp. 419-461 in Zoosystema 30 (2) on page 437, DOI: 10.5281/zenodo.5392933
Stolas hermanni Mesomphaliini
Creators: name: Sekerka, Lukáš
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Stolas
Stolas hermanni

description: Stolas hermanni (Spaeth, 1911) (Mesomphaliini)
 Published record. Itapecirica da Serra (Bඈඋඈඐංൾർ +|TൺΚංඓൺඐൺ 2011).
 Distribution. Ecuador and Peru.
 Remarks. Bඈඋඈඐංൾർ +| TൺΚංඓൺඐൺ (2011) recorded two specimens of S. hermanni from São Paulo, Brazil; however, I find it quite unlikely that they truly were collected in E Brazil and in my opinion, they were erroneously labelled. Stolas hermanni belongs among the species characterized by usually more or less visible pubescence on elytra, disc of elytra usually black and explanate margin with more or less developed yellow/red/orange pattern. There are several species-groups with these characters, and all are restricted to the Andes and sub-Andean zones, particularly in Ecuador and Peru. So far, the easternmost of these species is S. agenysiformis Borowiec, 2011 from Rondônia. Therefore, S. hermanni is removed from the fauna of São Paulo. The same case is S. pleurosticha and S. scoparia recorded in the same publication; all three species are common in Peru. Moreover, all three were recorded from the same locality and collecting date and are the only published from this locality by Bඈඋඈඐංൾർ +|TൺΚංඓൺඐൺ (2011); thus, I am quite sure they must have been mislabelled.
description: Published as part of Sekerka, Lukáš, 2020, Commented catalogue of Cassidinae (Coleoptera: Chrysomelidae) of the state of São Paulo, Brazil, with remarks on the collection of Jaro Mráz in the National Museum in Prague, pp. 667-707 in Acta Entomologica Musei Nationalis Pragae (Acta. Ent. Mus. Natl. Pragae) (Acta. Ent. Mus. Natl. Pragae) 60 (2) on page 702, DOI: 10.37520/aemnp.2020.048, http://zenodo.org/record/5178055
Stolas pleurosticha Mesomphaliini
Creators: name: Sekerka, Lukáš
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Stolas
Stolas pleurosticha

description: Stolas pleurosticha (Erichson, 1847) (Mesomphaliini)
 Published record. Itapecerica da Serra (Bඈඋඈඐංൾർ +|TൺΚංඓൺඐൺ 2011).
 Distribution. Bolivia, Colombia, Ecuador, and Peru. Remarks. This is the same case as S. hermanni and therefore the species is removed from the fauna of Brazil.
description: Published as part of Sekerka, Lukáš, 2020, Commented catalogue of Cassidinae (Coleoptera: Chrysomelidae) of the state of São Paulo, Brazil, with remarks on the collection of Jaro Mráz in the National Museum in Prague, pp. 667-707 in Acta Entomologica Musei Nationalis Pragae (Acta. Ent. Mus. Natl. Pragae) (Acta. Ent. Mus. Natl. Pragae) 60 (2) on page 703, DOI: 10.37520/aemnp.2020.048, http://zenodo.org/record/5178055
MOESM2 of Human gene expression variability and its dependence on methylation and aging
Creators: name: Bashkeel, Nasser
name: Perkins, Theodore
name: KÃ¦Rn, Mads
name: Lee, Jonathan
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Cancer

description: Additional file 2. EV Correlation between different tissue types
A tracial quantum central limit theorem
Creators: name: Kuperberg, Greg
Publisher: name: arXiv
Year: 2002
Subjects: subject: Mathematical Physics (math-ph)
subject: Operator Algebras (math.OA)
subject: Probability (math.PR)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: We prove a central limit theorem for non-commutative random variables in a von Neumann algebra with a tracial state: Any non-commutative polynomial of averages of i.i.d. samples converges to a classical limit. The proof is based on a central limit theorem for ordered joint distributions together with a commutator estimate related to the Baker-Campbell-Hausdorff expansion. The result can be considered a generalization of Johansson's theorem on the limiting distribution of the shape of a random word in a fixed alphabet as its length goes to infinity [math.CO/9906120,math.PR/9909104].
description: 7 pages
Modeling User Reputation in Online Social Networks: The Role of Costs, Benefits, and Reciprocity
Creators: name: Schweitzer, Frank
name: Mavrodiev, Pavlin
name: Seufert, Adrian M.
name: Garcia, David
Publisher: name: arXiv
Year: 2019
Subjects: subject: Social and Information Networks (cs.SI)
subject: Multiagent Systems (cs.MA)
subject: Adaptation and Self-Organizing Systems (nlin.AO)
subject: Physics and Society (physics.soc-ph)
subject: FOS: Computer and information sciences
subject: FOS: Physical sciences

description: We analyze an agent-based model to estimate how the costs and benefits of users in an online social network (OSN) impact the robustness of the OSN. Benefits are measured in terms of relative reputation that users receives from their followers. They can be increased by direct and indirect reciprocity in following each other, which leads to a core-periphery structure of the OSN. Costs relate to the effort to login, to maintain the profile, etc. and are assumed as constant for all users. The robustness of the OSN depends on the entry and exit of users over time. Intuitively, one would expect that higher costs lead to more users leaving and hence to a less robust OSN. We demonstrate that an optimal cost level exists, which maximizes both the performance of the OSN, measured by means of the long-term average benefit of its users, and the robustness of the OSN, measured by means of the life-time of the core of the OSN. Our mathematical and computational analyses unfold how changes in the cost level impact reciprocity and subsequently the core-periphery structure of the OSN, to explain the optimal cost level.
Desarrollo y territorio: antropología de un proyecto de infraestructura vial en la provincia de Chaco.
Creators: name: Zorzoli, Facundo
Publisher: name: Zenodo
Year: 2015
Subjects: Chaco
Desarrollo
Infraestructura vial
Frontera agropecuaria
Pampa del Indio
Ruta provincial Nº3

description: El objetivo general de la tesis remite a abordar los modos en que se producen el “qué”, el “quién” y el “para qué” del desarrollo a partir del análisis del proceso de diseño y ejecución de un proyecto de desarrollo de infraestructura vial financiado por el BIRF en la provincia de Chaco (Argentina); atendiendo a los vínculos, disputas, tensiones y negociaciones que se despliegan en la intersección e interacción de escalas y actores a partir de las discontinuidades que existen entre ellos en términos de valores, intereses, conocimiento y poder. El caso es el de la RP3 Pampa del Indio-Villa Río Bermejito. A nivel metodológico, se propone una diferenciación operacional en dos niveles para desarrollar el análisis: (a) instituciones/agentes del desarrollo; (b) pequeños productores criollos y campesinos. La unidad de registro para el primer nivel fueron principalmente fuentes y documentos elaborados en diferentes instancias institucionales. Para el segundo nivel, el trabajo de campo etnográfico fue la principal herramienta metodológica. El mismo se realizó en la localidad de Pampa del Indio y los parajes aledaños en el invierno 2014. Concluimos que es la presencia histórica de otras territorialidades, de otras intencionalidades la que ha producido un espacio sobre el que hoy se diseñan y proyectan intervenciones de desarrollo y conservación. No afirmamos de ningún modo que en las comunidades rurales de presencia histórica haya algo así como un “carácter conservacionista”, más bien planteamos que los sentidos hegemónicos que componen la semántica del desarrollo expresan una intencionalidad que niega otras posibilidades, niega otros mundos de vida u otras formas de existir al asimilar a toda actividad humana productiva los resultados en términos de degradación ambiental a los que ha dado lugar la lógica de uso hegemónica del espacio y apropiación de la naturaleza que se promociona como desarrollo.
Additional file 6 of Epigenome-wide association study of lung function in Latino children and youth with asthma
Creators: name: Herrera-Luis, Esther
name: Li, Annie
name: Mak, Angel C. Y.
name: Perez-Garcia, Javier
name: Elhawary, Jennifer R.
name: Oh, Sam S.
name: Hu, Donglei
name: Eng, Celeste
name: Keys, Kevin L.
name: Huntsman, Scott
name: Beckman, Kenneth B.
name: Borrell, Luisa N.
name: Rodriguez-Santana, Jose
name: Burchard, Esteban G.
name: Pino-Yanes, Maria
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 6. Supplementary Material.