cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 4 of RhoB affects colitis through modulating cell signaling and intestinal microbiome
Creators: name: Yang, Jianming
name: Pei, Geng
name: Sun, Xuan
name: Xiao, Yawen
name: Miao, Chunhui
name: Zhou, Lu
name: Wang, Bangmao
name: Yang, Liu
name: Yu, Mingyu
name: Zhang, Zhi-Song
name: Keller, Evan T.
name: Yao, Zhi
name: Wang, Quan
Publisher: name: figshare
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer

description: Additional file 4: Figure S4. SB239063 and CHIR99021 could respectively restore increased expression of Ki67 and Muc2 in siRhoB transfected SW480 cells. (A) Western blotting analysis of RhoB knockdown efficiency in SW480 cells as indicated. β-Actin serves as a loading control. (B) Representative confocal images of Muc2 staining (red) and DAPI (blue) in SW480 cells and quantification. (C) Representative confocal images of Ki67 staining (green) and DAPI (blue) in SW480 cells and quantification. (D) Representative confocal images of Ki67 staining (green) and DAPI (blue) and quantification in SW480 cells as indicated. (E) Representative confocal images of Muc2 staining (red) and DAPI (blue) and quantification in SW480 cells as indicated. Scale bar: 100 μm (B-E). n = 3 from 3 independent experiments (B-E). Data are the mean ± SD. Unpaired Student’s t-test (B-C) or one-way ANOVA (D-E). **p < 0.01, ***p < 0.001, ****p < 0.0001. NS, not significant.
Farmers’ Rankings of the Determinants of Land Use Decisions at the Margins of the Corn Belt
Creators: name: Wang, Tong
name: Luri, Moses
name: Janssen, Larry
name: Hennessy, David
name: Feng, Hongli
name: Wimberly, Michael
name: Arora, Gaurav
name: Wang, Tong
name: Luri, Moses
name: Janssen, Larry
name: Hennessy, David
name: Feng, Hongli
name: Wimberly, Michael
name: Arora, Gaurav
Publisher: name: Unknown
Year: 2016
Subjects: subject: Agricultural and Food Policy
subject: Farm Management
subject: Land Economics/Use
subject: cropping systems
subject: ecosystem services
subject: food-fuel-environment debate
subject: grassland conversion
subject: human dimensions to ecosystems

description: The extent of United States Great Plains grass agriculture has ebbed and flowed over decades in response to market incentives, government policies, technological innovations and weather patterns. Our thesis is that the land most responsive to these drivers is at the economic margin between grass-based production and cropping. Much of the eastern Dakotas is such an area, primarily under crop-based agriculture although grass remains an important land use. We surveyed land operators in the area on their views about motivators for land use choices. Their views are largely consistent with the economic margin viewpoint. The importance of crop output prices, crop input prices, innovations in cropping equipment and weather patterns on land use decisions grow as one moves north toward the economic margin. Land in more highly sloped areas is more sensitive to crop prices and crop insurance policies. Consistent with human capital theory, older operators are generally less responsive to factors that affect land use. Those renting more land, being more exposed to market forces, are more responsive. As farm size increases, respondents declared higher land use sensitivity to policy issues and technological innovations, suggesting that scale effects render land units more sensitive to land use change drivers.
Semitreta Biernat 1973
Creators: name: Hansen, Jesper
name: Holmer, Lars E.
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Brachiopoda
Lingulata
Acrotretida
Acrotretidae
Semitreta

description: Genus Semitreta Biernat, 1973
 Type species. — Semitreta maior Biernat, 1973; by original designation; Lower Ordovician, Tremadocian; Poland.
description: Published as part of Hansen, Jesper & Holmer, Lars E., 2011, Taxonomy and biostratigraphy of Ordovician brachiopods from northeastern Ny Friesland, Spitsbergen 3076, pp. 1-122 in Zootaxa 3076 (1) on page 59, DOI: 10.11646/zootaxa.3076.1.1, http://zenodo.org/record/5243500
Consumers’ Willingness-To-Pay for RNAi versus Bt Rice: Are all biotechnologies the same?
Creators: name: Shew, Aaron M.
name: Danforth, Diana M.
name: Nalley, Lawton L.
name: Nayga, Rodolfo M.
name: Tsiboe, Francis
name: Dixon, Bruce L.
name: Shew, Aaron M.
name: Danforth, Diana M.
name: Nalley, Lawton L.
name: Nayga, Rodolfo M.
name: Tsiboe, Francis
name: Dixon, Bruce L.
Publisher: name: Unknown
Year: 2016
Subjects: subject: Agribusiness
subject: Agricultural and Food Policy
subject: Food Consumption/Nutrition/Food Safety
subject: Marketing
subject: FOS: Economics and business
subject: Risk and Uncertainty
subject: Biotechnology
subject: Willingness-To-Pay
subject: GMO

description: Consumers’ valuation of food products derived from Genetically Modified Organisms (GMOs) have played a pivotal and often constraining role in the development of biotechnology advances in agriculture. As a result, agricultural companies have started exploring new biotechnologies that do not require the genetic modification of crops. One of these emerging biotechnologies is a non-GMO RNA interference (RNAi) liquid application that could be used to control specific insect pests. When ingested by a targeted sub-species of an insect during production, RNAi blocks the expression of a vital gene, which in turn kills it. RNAi is non-toxic to humans and kills only targeted sub-species of insects, which differs from most conventional pesticides. For example, RNAi could selectively eliminate a specific sub-species of caterpillar pest, while not harming a monarch butterfly caterpillar. In contrast, conventional pesticides often kill insects indiscriminately and vary in human toxicity levels. Since agricultural producers and researchers have faced opposition to GMOs, this may be an alternative to controlling commonly encountered insects; however, consumers’ valuation of traditional GM compared to RNAi derived foods has not been evaluated in the scientific literature. Thus, we conducted a Willingness-To-Pay (WTP) survey in the USA, Canada, Australia, France, and Belgium to analyze whether consumers need a premium or discount for: (1) a hypothetical GMO rice using the Bacillus thuringiensis (Bt) gene for insect control; and (2) a hypothetical non-GMO rice using RNAi for insect control. Since there is currently no commercially-available GMO rice, measuring consumers’ valuation of rice produced by alternative biotechnologies provides vital information for crop breeders and policy makers. The results suggest that consumers require a discount for RNAi and Bt rice compared to a conventionally produced rice, but the discount required for the non-GMO RNAi rice was 30-40 percent less than that needed to purchase GMO Bt rice (p < 0.01).
Black hole, string ball, and p-brane production at hadronic supercolliders
Creators: name: Cheung, Kingman
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In models of large extra dimensions, the string and Planck scales become accessible at future colliders. When the energy scale is above the string scale or Planck scale a number of interesting phenomena occur, namely, production of stringy states, p-branes, string balls, black hole, etc. In this work, we systematically study the production cross sections of black holes, string balls, and p-branes at hadronic supercolliders. We also discuss their signatures. At the energy scale between the string scale M_s and M_s/g_s^2, where g_s is the string coupling, the production is dominated by string balls, while beyond M_s/g_s^2 it is dominated by black holes. The production of a p-brane is only comparable to black holes when the p-brane wraps entirely on small extra dimensions. Rough estimates on the sensitivity reaches on the fundamental Planck scale M_D are also obtained, based on the number of raw events.
description: 30 pages, to match the published version in PRD, added references
Associations between Food Scarcity during Pregnancy and Children’s Survival and Linear Growth in Zambia
Creators: name: Jolejole-Foreman, Maria Christina
name: Olofin, Ibironke
name: Fawzi, Wafaie
name: Fink, Gunther
name: Jolejole-Foreman, Maria Christina
name: Olofin, Ibironke
name: Fawzi, Wafaie
name: Fink, Gunther
Publisher: name: Unknown
Year: 2016
Subjects: subject: Food Security and Poverty
subject: International Development
subject: Seasonal food reserves
subject: seasonal food scarcity
subject: Undernutrition in pregnant women
subject: children survival and linear growth

description: A growing body of literature suggests that in utero exposure to hunger negatively affects children’s survival and linear growth. In this paper, we retrospectively linked data on local agricultural output and household food reserves during the in utero period to children’s health and nutritional status in the first five years of their life. We hypothesized that seasonal variations in agricultural yields and food reserves affect the quantity and diversity of food intake during pregnancy, and that pregnancies during periods with limited food reserves are associated with poorer child health outcomes. We generated a food reserve scarcity index (FRSI) based on reported food stocks at the household level reported in post-harvest surveys from 2001-2007 and estimated associations with child survival, birth size and World Health Organization (WHO) growth Z scores using multivariable regression model. We found negative and statistically significant associations between children’s weight and height Z-scores (WAZ and HAZ) and food scarcity in all trimesters with largest associations for the first and third trimesters. While we found that food scarcity in the second trimester increases children’s mortality risk, food scarcity in early gestation had protective effects on mortality. The results suggest that policies aimed at reducing vulnerability to food scarcity require targeting the vulnerable populations and proper timing of policies. Policy implications encompass two pathways: One is through nutrition such as food aid and supplements; And with the recurrence of food scarcity problem, the second more sustainable solution is through agriculture and extension such as proper food storage.
Scaphelasma Cooper 1956
Creators: name: Hansen, Jesper
name: Holmer, Lars E.
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Brachiopoda
Lingulata
Acrotretida
Scaphelasmatidae
Scaphelasma

description: Genus Scaphelasma Cooper, 1956
 Type species. — Scaphelasma septatum Cooper, 1956; by original designation; Middle Ordovician, upper Darriwilian; Alabama.
description: Published as part of Hansen, Jesper & Holmer, Lars E., 2011, Taxonomy and biostratigraphy of Ordovician brachiopods from northeastern Ny Friesland, Spitsbergen 3076, pp. 1-122 in Zootaxa 3076 (1) on page 66, DOI: 10.11646/zootaxa.3076.1.1, http://zenodo.org/record/5243500
Numericoma Popov 1980
Creators: name: Hansen, Jesper
name: Holmer, Lars E.
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Brachiopoda
Lingulata
Acrotretida
Ephippelasmatidae
Numericoma

description: Genus Numericoma Popov in Nazarov & Popov, 1980
 Type species. — Numericoma ornata Popov in Nazarov & Popov, 1980; by original designation; Middle Ordovician, Dapingian; Kazakhstan.
description: Published as part of Hansen, Jesper & Holmer, Lars E., 2011, Taxonomy and biostratigraphy of Ordovician brachiopods from northeastern Ny Friesland, Spitsbergen 3076, pp. 1-122 in Zootaxa 3076 (1) on page 68, DOI: 10.11646/zootaxa.3076.1.1, http://zenodo.org/record/5243500
Machine learning-selected variables associated with CD4 T cell recovery under antiretroviral therapy in very advanced HIV infection
Creators: name: Romero-Rodríguez, Dámaris P.
name: Ramírez, Carlos
name: Imaz-Rosshandler, Iván
name: Ormsby, Christopher E.
name: Peralta-Prado, Amy
name: Olvera-García, Gustavo
name: Cervantes, Fernanda
name: Würsch-Molina, Daniela
name: Romero-Rodríguez, Jessica
name: Jiang, Wei
name: Reyes-Terán, Gustavo
name: Espinosa, Enrique
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Research
Machine learning
HIV infections
Antiretroviral therapy
Immune reconstitution
CD4-CD8 ratio

description: Abstract: Background: A considerable portion of the HIV pandemic is composed of people under antiretroviral therapy, many of whom get a late diagnosis. Patients starting antiretroviral therapy (ART) at a very advanced stage of HIV disease attain a low recovery of CD4 T cells. Factors associated with poor recovery are incompletely described. This study aimed at finding variables associated with CD4 T cell recovery in late-presenting HIV patients. Methods: We studied a cohort of HIV+ patients initiating ART with very low basal CD4 T cell counts. We defined immune recovery as the net increase in circulating CD4 T cell counts after one year on ART. We analyzed diverse routine laboratory determinations at different times using Least Absolute Shrinkage and Selection Operator (LASSO), adaptive LASSO and Conditional Inference Random Forest. Results: CD4/CD8 ratio, % CD4 T cells and CD8 T cell counts at different times were the main recovery correlates, validated by all approaches. Unexpectedly, basal hematocrit was a consistent predictor. Additionally, week 24 creatinine had a high lasso coefficient, and alkaline phosphatase had a high conditional inference random forest coefficients, although neither was verified by other tests. Conclusions: CD4 T cell proportions are associated with CD4 T cell recovery, independently of cell counts. Inflammation-related variables could also affect reconstitution. These accessible variables may reflect underlying mechanisms and could improve the follow up of patients starting ART with an advanced HIV infection.
Fourier spectra for nonuniform phase-shifting algorithms based on principal component analysis
Creators: name: Servin, Manuel
name: Padilla, Moises
name: Garnica, Guillermo
name: Paez, Gonzalo
Publisher: name: arXiv
Year: 2019
Subjects: subject: Signal Processing (eess.SP)
subject: Optics (physics.optics)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Physical sciences

description: We develop an error-free, nonuniform phase-stepping algorithm (nPSA) based on principal component analysis (PCA). PCA-based algorithms typically give phase-demodulation errors when applied to nonuniform phase-shifted interferograms. We present a straightforward way to correct those PCA phase-demodulation errors. We give mathematical formulas to fully analyze PCA-based nPSA (PCA-nPSA). These formulas give a) the PCA-nPSA frequency transfer function (FTF), b) its corrected Lissajous figure, c) the corrected PCA-nPSA formula, d) its harmonic robustness, and e) its signal-to-noise-ratio (SNR). We show that the PCA-nPSA can be seen as a linear quadrature filter, and as consequence, one can find its FTF. Using the FTF, we show why plain PCA often fails to demodulate nonuniform phase-shifted fringes. Previous works on PCA-nPSA (without FTF), give specific numerical/experimental fringe data to "visually demonstrate" that their new nPSA works better than competitors. This often leads to biased/favorable fringe pattern selections which "visually demonstrate" the superior performance of their new nPSA. This biasing is herein totally avoided because we provide figures-of-merit formulas based on linear systems and stochastic process theories. However, and for illustrative purposes only, we provide specific fringe data phase-demodulation, including comprehensive analysis and comparisons.
description: 10 pages, 8 figures
MOESM3 of Identification of significant proxy variable for the physiological status affecting salt stress-induced lipid accumulation in Chlorella sorokiniana HS1
Creators: name: Oh, Seung
name: Chang, Yong
name: Lee, Jay
Publisher: name: figshare
Year: 2019
Subjects: Biophysics
Biochemistry
Medicine
Cell Biology
Molecular Biology

description: Additional file 3: Figure S2. Difference in the cell status according to culture temperature.
O'SPIRINLARNI KASBGA YO'NALTIRSHNING PEDAGOGIK-PSIXOLOGIK AHAMIYATI
Creators: name: Turabekova, Shahnoza Damirovna
Publisher: name: Zenodo
Year: 2025

description: Ushbu maqolada o‘spirinlarning psixologik rivojlanishi, ularning ijtimoiy va shaxsiy o‘zgarishlari, shuningdek, kasbga yo‘naltirish jarayonida ularning psixologik ehtiyojlari haqida ma'lumot va tavsiyalar berilgan.
Eventually Entanglement Breaking Markovian Dynamics: Structure and Characteristic Times
Creators: name: Hanson, Eric P.
name: Rouzé, Cambyse
name: Stilck França, Daniel
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Original Paper

description: Funder: Cantab Capital Institute for the Mathematics of Information
description: Abstract: We investigate entanglement breaking times of Markovian evolutions in discrete and continuous time. In continuous time, we characterize which Markovian evolutions are eventually entanglement breaking, that is, evolutions for which there is a finite time after which any entanglement initially present has been destroyed by the noisy evolution. In the discrete-time framework, we consider the entanglement breaking index, that is, the number of times a quantum channel has to be composed with itself before it becomes entanglement breaking. The PPT2 conjecture is that every PPT quantum channel has an entanglement breaking index of at most 2; we prove that every faithful PPT quantum channel has a finite entanglement breaking index, and more generally, any faithful PPT CP map whose Hilbert–Schmidt adjoint is also faithful is eventually entanglement breaking. We also provide a method to obtain concrete bounds on this index for any faithful quantum channel. To obtain these estimates, we use a notion of robustness of separability to obtain bounds on the radius of the largest separable ball around faithful product states. We also extend the framework of Poincaré inequalities for non-primitive semigroups to the discrete setting to quantify the convergence of quantum semigroups in discrete time, which is of independent interest.
Direct Photon Production in Heavy Ion Reactions at SPS and RHIC
Creators: name: Peitzmann, Thomas
Publisher: name: arXiv
Year: 2002
Subjects: subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: A review on experimental results for direct photon production in heavy ion reactions is given. A brief survey of early direct photon limits from SPS experiments is presented. The first measurement of direct photons in heavy ion reactions from the WA98 collaboration is discussed and compared to theoretical calculations. An outlook on the perspective of photon measurements at RHIC is given.
description: 12 pages, 8 figures, invited talk at ICPA-QGP 2001, Jaipur, India, to be published in PRAMANA
Role of Defects in Photocatalytic Water Splitting: Monodoped vs Codoped SrTiO$_3$
Creators: name: Kumar, Manish
name: Basera, Pooja
name: Saini, Shikha
name: Bhattacharya, Saswata
Publisher: name: arXiv
Year: 2019
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Using the hybrid density functional theory and \textit{ab initio} atomistic thermodynamics, we report monodoping of non-metal (N) or metal (Mn) in SrTiO$_3$ can induce visible light absorption, but none of them are suitable to ameliorate the photocatalytic activity. Therefore, in order to achieve enhanced photocatalytic activity of SrTiO$_3$, we have employed codoped Mn and N simultaneously in SrTiO$_3$ to modulate its electronic properties effectively. In the codoped SrTiO$_3$, the recombination of photogenerated charge carriers is suppressed, and the diffusion and mobility are increased owing to the passivation of discrete localized states. Our results reveal that Mn$_{\textrm{Sr}}\textrm{N}_\textrm{O}$ (codoping of Mn at Sr site and N at O site) is the most promising candidate for enhancing the photocatalytic activity of SrTiO$_3$ under visible light.
description: 36 pages, 13 figures
MOESM4 of Identification of significant proxy variable for the physiological status affecting salt stress-induced lipid accumulation in Chlorella sorokiniana HS1
Creators: name: Oh, Seung
name: Chang, Yong
name: Lee, Jay
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Molecular Biology
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: Computational Biology

description: Additional file 4: Table S2. Silhouette score table.
Pressure-induced metallization in solid boron
Creators: name: Zhao, Jijun
name: Lu, Jian Ping
Publisher: name: arXiv
Year: 2001
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Different phases of solid boron under high pressure are studied by first principles calculations. The $α$-B$_{12}$ structure is found to be stable up to 270 GPa. Its semiconductor band gap (1.72 eV) decreases continuously to zero around 160 GPa, where the material transforms to a weak metal. The metallicity, as measured by the density of states at the Fermi level, enhances as the pressure is further increased. The pressure-induced metallization can be attributed to the enhanced boron-boron interactions that cause bands overlap. These results are consist with the recently observed metallization and the associated superconductivity of bulk boron under high pressure (M.I.Eremets et al, Science{\bf 293}, 272(2001)).
description: 14 pages, 5 figures
Additional file 1 of In vivo 5-ethynyluridine (EU) labelling detects reduced transcription in Purkinje cell degeneration mouse mutants, but can itself induce neurodegeneration
Creators: name: Sant, Lisanne J. Van’t
name: White, Joshua J.
name: Hoeijmakers, Jan H. J.
name: Vermeij, Wilbert P.
name: Jaarsma, Dick
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: Hematology
subject: Computational Biology

description: Additional file 1: Fig. S1. No caspase3+ cells in the Purkinje cell layer. Triple staining for active caspase 3, calbindin and EU, showing a caspase3+ cell with a pyknotic nucleus (arrow) in the molecular layer 14 days after EU injection.
Zero-Correlation Entanglement
Creators: name: Ohira, Toru
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: We consider a quantum entangled state for two particles, each particle having two basis states, which includes an entangled pair of spin 1/2 particles. We show that, for any quantum entangled state vectors of such systems, one can always find a pair of observable operators X, Y with zero-correlations = . At the same time, if we consider the analogous classical system of a "classically entangled" (statistically non-independent) pair of random variables taking two values, one can never have zero correlations (zero covariance, E[XY] - E[X]E[Y] = 0). We provide a general proof to illustrate the different nature of entanglements in classical and quantum theories.
description: 11 pages, Discussion on the quantum pigeonhole effect and references added in version 2; Extension to mixed states is added in the appendix in version 3 (The appendix is not included in the published version in PTEP)
A potential nomenclature for the Immuno Polymorphism Database (IPD) of chicken MHC genes: progress and problems
Creators: name: Afrache, Hassnae
name: Tregaskes, Clive A.
name: Kaufman, Jim
Publisher: name: Apollo - University of Cambridge Repository
Year: 2019
Subjects: Review
Nomenclature, databases and bioinformatics in Immunogenetics
BF-BL region
BF1
BF2
BLB1
BLB2
Recombination

description: Abstract: Among the genes with the highest allelic polymorphism and sequence diversity are those encoding the classical class I and class II molecules of the major histocompatibility complex (MHC). Although many thousands of MHC sequences have been deposited in general sequence databases like GenBank, the availability of curated MHC sequences with agreed nomenclature has been enormously beneficial. Along with the Immuno Polymorphism Database-IMunoGeneTics/human leukocyte antigen (IPD-IMGT/HLA) database, a collection of databases for curated sequences of immune importance has been developed. A recent addition is an IPD-MHC database for chickens. For many years, the nomenclature system for chicken MHC genes has been based on a list of standard, presumed to be stable, haplotypes. However, these standard haplotypes give different names to identical sequences. Moreover, the discovery of new recombinants between haplotypes and a rapid increase in newly discovered alleles leaves the old system untenable. In this review, a new nomenclature is considered, for which alleles of different loci are given names based on the system used for other MHCs, and then haplotypes are named according to the alleles present. The new nomenclature system is trialled, first with standard haplotypes and then with validated sequences from the scientific literature. In the trial, some class II B sequences were found in both class II loci, presumably by gene conversion or inversion, so that identical sequences would receive different names. This situation prompts further suggestions to the new nomenclature system. In summary, there has been progress, but also problems, with the new IPD-MHC system for chickens.
Supplementary material 1: R Script from Quantifying wildfire risk to the built environment in rural rangelands of the US Interior West
Creators: name: McGranahan, Devan
name: Wonkka, Carissa
Publisher: name: The Royal Society
Year: 2025
Subjects: classificationCode: 310399
subject: Ecology not elsewhere classified

description: SuppInfo_1_Rscript.pdf
The Impact of Impulsive Behavior on Fresh Produce Purchase: Do the Shopping Companions Matter?
Creators: name: Chen, Xuqi
name: Gao, Zhifeng
name: Chen, Xuqi
name: Gao, Zhifeng
Publisher: name: Unknown
Year: 2016
Subjects: subject: Agribusiness
subject: Consumer/Household Economics
subject: Food Consumption/Nutrition/Food Safety
subject: Institutional and Behavioral Economics
subject: Marketing
subject: FOS: Economics and business
subject: Impulsive Purchasing
subject: Shopping Companions
subject: Emotion
subject: Grocery Shopping
subject: Impulsiveness

description: Impulsive purchase is defined as a consumer’s unplanned buying behavior, which is of significance in marketing and consumer behavior. They usually occur when consumers experience a sudden urge to purchase something immediately without additional substantive evaluation, and execute based upon that urge. This study exams the influence of shopping companions upon consumers, with a particular focus on impulsive behavior. Previous literature has indicated a significant correlation between emotion and consumer final purchase decisions. However, few researchers before conducted the study studied the influence of various companions and their influence on consumers impulsive purchasing. Around 2,400 participants joined in this survey, gave their responses of most frequent grocery shopping companions and usual responses to the suggestions from these companions. In addition, participants’ impulsiveness, emotion, and emotional level were tested and corresponding index was created. Results indicate that dad/mom and wife/husband were the two most frequent and influential grocery shopping companions. Participants were very likely to accept the impulsive suggestions from these two groups. As for the regression, multiple factors were found significant, while the results diverse when applying to different shopping companion groups.
Fayet-Iliopoulos terms in 5d theories and their phenomenological implications
Creators: name: Marti, Daniel
name: Pomarol, Alex
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Supersymmetric theories in 5d orbifold can have Fayet-Iliopoulos (FI) terms on the boundaries. These terms induce a 5d mass for the bulk matter fields. We analyze this effect using N=1 superfields and show how it can be understood as a mixing between the U(1) gauge boson and the graviphoton. We also study the implications of the FI-terms in the mass spectrum of theories with Scherk-Schwarz supersymmetry breaking. We present a new 5d supersymmetric model that has the massless spectrum of the Standard Model and predicts a Higgs boson with a mass around the present experimental limit.
description: 15 pages, Latex, axodraw
MOESM2 of Identification of significant proxy variable for the physiological status affecting salt stress-induced lipid accumulation in Chlorella sorokiniana HS1
Creators: name: Oh, Seung
name: Chang, Yong
name: Lee, Jay
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences

description: Additional file 2: Figure S1. Difference in the amount of lipid induced according to salt stress condition.
Torynelasma Cooper 1956
Creators: name: Hansen, Jesper
name: Holmer, Lars E.
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Brachiopoda
Lingulata
Acrotretida
Torynelasmatidae
Torynelasma

description: Genus Torynelasma Cooper, 1956
 Type species. — Torynelasma toryniferum Cooper, 1956; by original designation; Middle Ordovician, Darriwilian; Alabama.
 Plate 19
 Numericoma ? proclina sp. nov.
Valhallfonna Formation, Olenidsletta Member.
1–3. TSGF16832, paratype, dorsal valve exterior, oblique anterolateral view, and larval shell. 90 m above base. Coll. J. Hansen, 20.07.2008, sample JH-45.
4. TSGF16828, paratype, dorsal valve interior. 94 m above base. Coll. J. Hansen, 21.07.2008, sample JH-52.
5. TSGF16837, paratype, dorsal valve interior. 90 m above base. Coll. J. Hansen, 20.07.2008, sample JH-45.
6. TSGF16833, paratype, dorsal valve interior. 90 m above base. Coll. J. Hansen, 20.07.2008, sample JH-45.
7–8. TSGF16831, paratype, dorsal valve interior, oblique lateral view. 90 m above base. Coll. J. Hansen, 20.07.2008, sample JH-45.
 9–11. TSGF16830, holotype, ventral valve exterior, oblique posterolateral view, and anterior view. 94 m above base. Coll. J. Hansen, 21.07.2008, sample JH-52.
12–13. TSGF16835, paratype, ventral valve exterior and somewhat abraded larval shell. 90 m above base. Coll. J. Hansen, 20.07.2008, sample JH-45.
14. TSGF16827, paratype, ventral valve interior. 94 m above base. Coll. J. Hansen, 21.07.2008, sample JH-52.
 Numericoma ? proclina var. 1
15. TSGF16941, dorsal valve exterior. Valhallfonna Formation, Profilbekken Member, 26 m above base. Coll. J. Hansen, 04.08.2008, sample JH-184.
description: Published as part of Hansen, Jesper & Holmer, Lars E., 2011, Taxonomy and biostratigraphy of Ordovician brachiopods from northeastern Ny Friesland, Spitsbergen 3076, pp. 1-122 in Zootaxa 3076 (1) on pages 73-75, DOI: 10.11646/zootaxa.3076.1.1, http://zenodo.org/record/5243500
Additional file 1 of RhoB affects colitis through modulating cell signaling and intestinal microbiome
Creators: name: Yang, Jianming
name: Pei, Geng
name: Sun, Xuan
name: Xiao, Yawen
name: Miao, Chunhui
name: Zhou, Lu
name: Wang, Bangmao
name: Yang, Liu
name: Yu, Mingyu
name: Zhang, Zhi-Song
name: Keller, Evan T.
name: Yao, Zhi
name: Wang, Quan
Publisher: name: figshare
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer

description: Additional file 1: Figure S1. RhoB was significantly increased in epithelial cells in colon biopsies of UC patients. (A-I) RhoB scRNAseq analysis in colon tissues of UC patients. (A) RhoB visualised on the single-cell RNAseq of human colon cells of UC patients in Epithelial tSNE. (B) Violin plot indicating the expression of RhoB in epithelial cells from colon biopsies of UC patients and healthy controls. (C) Violin plot indicating the average expression of RhoB in epithelial cells from colon biopsies of UC patients and healthy controls. (D) RhoB visualised on the single-cell RNAseq of human colon cells of UC patients in Immune tSNE. (E) Violin plot indicating the expression of RhoB in immune cells from colon biopsies of UC patients and healthy controls. (F) Violin plot indicating the average expression of RhoB in immune cells from colon biopsies of UC patients and healthy controls. (G) tSNE plot visualizing the annotation and color codes for cell subset in epithelial cell from colon biopsies of UC patients and healthy controls. (H) tSNE plots highlighting the expression of RhoB in epithelial cell from colon biopsies of UC patients and healthy controls. (I) Violin plot indicating the expression of RhoB in the different clusters from colon biopsies of UC patients and healthy controls. (J) Representative confocal images of CA1, Muc2, Lgr5, CHGA, and RhoB staining in colonic tissues of the DSS-treated wild type mice. CA or Muc2 or Lgr5 or CHGA: red; RhoB: Green; DAPI: blue. Scale bar: 10 μm or 5μm. (K) Western blotting analysis of RhoB expression in colonic tissues of indicated genotypes. β-Actin serves as a loading control. (L) Immunohistochemistry analysis of RhoB expression in colonic tissues of the indicated genotypes. Scale bar: 50 μm.
A System Approach for Three-Dimensional Panel Data to Estimate Poultry Trade Impacts due to Animal Disease Outbreaks
Creators: name: Thompson, Jada M.
name: Pendell, Dustin L.
name: Thompson, Jada M.
name: Pendell, Dustin L.
Publisher: name: Unknown
Year: 2016
Subjects: subject: International Relations/Trade
subject: Research Methods/ Statistical Methods
subject: Hausman-Taylor
subject: Avian Influenza
subject: Seemingly Unrelated Regression

description: Disruptions in international trade can cause negative and costly impacts to both exporting and importing countries. These disruptions affect commodity groups differently based on level of processing and type of product. Disaggregating data into sub-commodity groups allows for a better understanding of the impact highly pathogenic diseases can have on trade quantities. In this analysis, a systems approach Hausman-Taylor estimations (HT-SUR) will be applied to estimate the factors affecting bilateral trade of disaggregated poultry commodities during an outbreak of a highly pathogenic avian influenza (HPAI) and exotic Newcastle disease (ND). The ending results will be a granular impact analysis of disease outbreaks on exporting countries by commodity.
GMO Contamination Price Effects in the U.S. Corn Market: StarLink and MIR162
Creators: name: Han, Xue
name: Philip, Garcia
name: Han, Xue
name: Philip, Garcia
Publisher: name: Unknown
Year: 2016
Subjects: subject: Agribusiness
subject: Agricultural Finance
subject: Demand and Price Analysis
subject: Marketing
subject: FOS: Economics and business
subject: corn
subject: sorghum
subject: cointegration
subject: GMO

description: While genetically modified technology has been investigated extensively, few studies have examined the price impact of genetically modified food contamination events. This paper contributes to the literature by examining the price effects of multiple genetically modified contamination events in the U.S. corn market. Using the relative price of substitute method and time-varying cointegration, we identify three structural breaks relevant to the corn contamination events, with the two largest being associated with StarLink and MIR162. Our results support the StarLink’s large effect on corn prices, but the effect attributed to MIR162 is less clear. This more recent break in prices emerged three months prior to China’s import ban, and was influenced by changes in U.S. corn supply, and EPA’s proposed reduction of the ethanol mandate. Expansion of sorghum exports and subsequent increased corn production likely kept pressure on corn prices. While China’s import ban on MIR162 may have influenced prices, evidence suggests the recent downturn in the U.S. corn market has been mainly caused by other domestic supply and demand changes.
The endpoint region in radiative quarkonia decays
Creators: name: Hautmann, F.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We consider the inclusive radiative decays quarkonium -> gamma + hadrons and examine the effects of soft QCD radiation on the photon energy spectrum near the endpoint.
description: Presented at the DPF2000 Meeting, Ohio State University, August 2000. (Version 2: minor typos corrected.)
Additional file 1 of Characteristics and biomarkers of patients with central nervous system infection admitted to a referral hospital in Northern Vietnam
Creators: name: Ngo, Cuong Chi
name: Shungo Katoh
name: Hasebe, Futoshi
name: Bhim Gopal Dhoubhadel
name: Hiraoka, Tomoko
name: Sugihiro Hamaguchi
name: Le, Anh Thi Kim
name: Nguyen, Anh Thi Hien
name: Dang, Anh Duc
name: Smith, Chris
name: Lay-Myint Yoshida
name: Do, Cuong Duy
name: Pham, Thuy Thi Thanh
name: Ariyoshi, Koya
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Neuroscience
subject: Biotechnology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Additional file 1: Table S1. Comparison of epidemiological and clinical characteristics between HIV-not-tested and HIV-tested population.
A generalization of balanced tableaux and marriage problems with unique solutions
Creators: name: Chan, Brian
Publisher: name: arXiv
Year: 2019
Subjects: subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: 05A20, 05C70, 05E45

description: We consider families of finite sets that we call shellable and that have been characterized by Chang and by Hirst and Hughes as being the families of sets that admit unique solutions to Hall's marriage problem. In this paper, we introduce a natural generalization of Edelman and Greene's balanced tableaux that involves families of sets that satisfy Hall's marriage Condition and certain words in $[n]^m$, then prove that shellable families can be characterized by a strong existence condition relating to this generalization. As a consequence of this characterization, we show that the average number of such generalized tableaux is given by a generalization of the hook-length formula.
description: Main result has been generalized to certain words in $[n]^m$. We thank an anonymous referee for finding a gap in the first half of the proof of Theorem 3.14 in the old draft, which we have fixed. Moreover, to Lemma 3.7 in the old draft, we have added a necessary extra assumption
Spatial and Temporal Variation in the Optimal Provision of Forest-based Carbon Storage
Creators: name: Ben Ayara, Amine
name: Cho, Seong-Hoon
name: Clark, Christopher
name: Lambert, Dayton
name: Armsworth, Paul
name: Ben Ayara, Amine
name: Cho, Seong-Hoon
name: Clark, Christopher
name: Lambert, Dayton
name: Armsworth, Paul
Publisher: name: Unknown
Year: 2016
Subjects: subject: Environmental Economics and Policy
subject: Carbon sequestration
subject: Forest
subject: Spatial heterogeneity
subject: Temporal heterogeneity
subject: Economic efficiency

description: Establishing new or expanding forest areas through afforestation, reforestation, and mitigation of deforestation can be an effective policy tool for offsetting greenhouse gas emissions. Despite the positive perspective, incentive payment approaches intended to encourage forest-based carbon sequestration are deemed to suffer inefficiency primarily due to asymmetric information between landowners and government agencies seeking to purchase environmental benefits. Failing to at least partially resolve this asymmetry may lead to some landowners receiving payments far exceeding their costs, and thus may result in deviation from optimal provision of ecosystem services. The objective of our research is to determine optimal provision of forest-based carbon storage, focusing particularly on how the optimal provision changes over space and time. This analysis occurs through the estimation of site-specific opportunity costs of supplying carbon storage that are used to derive cumulative carbon supply curves and to identify optimal spatial targeting of incentive payments. The empirical results for the 18-county case study show that optimal provision of forest-based carbon storage are 309,000, 435,171, and 356,171 metric tons per year for the periods of 1992-2001, 2001-2006, and 2006-2011, respectively, at the annual costs of about $5.8 million, $8.7 million, and $7.9 million, respectively. We found that the optimal provision of forest-based carbon storage differs across space and time because of the spatial and temporal heterogeneities in the marginal cost of carbon storage and the maximum potential gain of carbon storage. These findings have significant meanings in the literature since few studies, if any, explicitly consider both the temporal and spatial dynamics of the cost efficiency to come up with optimal budget outlays and corresponding carbon storage levels, payment amounts, and would-be participants. Our finding can be used in ways similar to the decision-making guide for Conservation Reserve Program (CRP) enrollment.
Supplementary material 3: State- and county-level WUI data from Quantifying wildfire risk to the built environment in rural rangelands of the US Interior West
Creators: name: McGranahan, Devan
name: Wonkka, Carissa
Publisher: name: The Royal Society
Year: 2025
Subjects: classificationCode: 310399
subject: Ecology not elsewhere classified

description: SuppInfo_3_StateCountyWUI.pdf
Additional file 11 of RhoB affects colitis through modulating cell signaling and intestinal microbiome
Creators: name: Yang, Jianming
name: Pei, Geng
name: Sun, Xuan
name: Xiao, Yawen
name: Miao, Chunhui
name: Zhou, Lu
name: Wang, Bangmao
name: Yang, Liu
name: Yu, Mingyu
name: Zhang, Zhi-Song
name: Keller, Evan T.
name: Yao, Zhi
name: Wang, Quan
Publisher: name: figshare
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer

description: Additional file 11: Figure S11. Autophagy does not affect Ki67, GPR41 and GPR43 protein levels. Mice were treated with rapamycin for 7 days and then were analyzed (n = 8 from 2 independent experiments). (A) Representative AB-PAS staining and quantification in colonic tissues of the indicated genotypes. (B) Representative Muc2 staining and quantitation in colon sections as indicated. (C) Representative confocal images of Muc2 staining in colonic tissues of the indicated genotypes. Quantification of the inner mucus layer thickness measured from the top of the villi to the periphery of the Muc2-positive region. Muc2: green; DAPI: blue. (D) Representative Ki67 staining and quantitation in colon sections as indicated. (E) Representative GPR41 staining and quantitation in colon sections as indicated. (F) Representative GPR43 staining and quantitation in colon sections as indicated. Scale bar: 10, 50 or 200 μm. Data are the mean ± SD. One-way ANOVA. ****p < 0.0001. NS, not significant.
The Effect of the Timing of Farm Transfer Initiation on Terminal Wealth in the Business: Simulation Model
Creators: name: Protopop, Iuliia
name: Boehlje, Michael
name: Stockton, Matthew
name: Bradley, Lubben
name: Protopop, Iuliia
name: Boehlje, Michael
name: Stockton, Matthew
name: Bradley, Lubben
Publisher: name: Unknown
Year: 2016
Subjects: subject: Agribusiness
subject: Agricultural Finance
subject: Farm Management
subject: intergenerational farm transfer
subject: terminal wealth
subject: transfer taxes
subject: life-cycle patterns.

description: This study presents a conceptual framework and empirical farm-level model of wealth creation and accumulation and incorporates the life-cycle patterns in farmer productivity and consumption to analyze how the timing of farm transfer initiation from the older to the younger generation impacts the terminal wealth in the business and thus the likelihood of the firm’s future continuity. The results of a representative large grain farm in Iowa confirm that the timing of a transfer is determined by two major tradeoffs: first, between the younger generation’s productivity and consumption withdrawals and, second, between the firm’s growth and transfer taxes. Given the age of both farmers (older and younger) used to populate the model and their respective consumption levels, the gain in total farm’s productivity is much lower compared to the loss of equity associated with additional consumption withdrawals resulting in reduced firm’s growth. Therefore, early transfer is not encouraged when no off-farm income is available and/or tax savings cannot justify the reduced firm’s growth. Generally, a preferred timing strategy is responsive to the availability of off-farm income (or level of equity withdrawals for younger generation’s consumption), the type of business model used to involve the younger generation in the farm business prior to the transfer initiation (active or passive successor), and expectations about farmland prices.
MOESM2 of Genomic analysis of the four ecologically distinct cactus host populations of Drosophila mojavensis
Creators: name: Allan, Carson
name: Matzkin, Luciano
Publisher: name: figshare
Year: 2019
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 2. This file includes the supplementary Tables S2-S10 and Figures S1-S22.
Biernatia Holmer 1989
Creators: name: Hansen, Jesper
name: Holmer, Lars E.
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Brachiopoda
Lingulata
Acrotretida
Biernatidae
Biernatia

description: Genus Biernatia Holmer, 1989
 Type species. — Torynelasma minor rossicum Gorjansky, 1969; by original designation; Lower Ordovician, Kunda Stage; Russia.
description: Published as part of Hansen, Jesper & Holmer, Lars E., 2011, Taxonomy and biostratigraphy of Ordovician brachiopods from northeastern Ny Friesland, Spitsbergen 3076, pp. 1-122 in Zootaxa 3076 (1) on page 75, DOI: 10.11646/zootaxa.3076.1.1, http://zenodo.org/record/5243500