WorldFAIR (D10.2) Agricultural Biodiversity Standards, Best Practices and Guidelines Recommendations
Creators: name: Drucker, Debora
name: Salim, José Augusto
name: Poelen, Jorrit
name: Soares, Filipi Miranda
name: Gonzalez-Vaquero, Rocio Ana
name: Ollerton, Jeff
name: Devoto, Mariano
name: Rünzel, Max
name: Robinson, Drew
name: Kasina, Muo
name: Taliga, Christine
name: Parr, Cynthia
name: Cox-Foster, Diana
name: Hill, Elizabeth
name: Motta Maués, Márcia
name: Saraiva, António Mauro
name: Agostini, Kayna
name: Carvalheiro, Luísa Gigante
name: Bergamo, Pedro
name: Varassin, Isabela
name: Alves, Denise Araujo
name: Marques, Bruno
name: Tinoco, Faleiro Carla
name: Rech, André Rodrigo
name: Cardona-Duque, Juliana
name: Idárraga, Mileidy
name: Agudelo-Zapata, M. Camila
name: Marentes Herrera, Esteban
name: Trekels, Maarten
Publisher: name: Zenodo
Year: 2024
Subjects: WorldFAIR
data standardisation
FAIR principles
Taxonomic validation
data cleaning
Darwin Core

description: The WorldFAIR Case Study on Agricultural Biodiversity (WP10) addresses the challenges of advancing interoperability and mobilising plant-pollinator interactions data for reuse. Previous efforts, reported in Deliverable 10.1 - from our discovery phase - provided an overview of projects, best practices, tools, and examples for creating, managing and sharing data related to plant-pollinator interactions, along with a work plan for conducting pilot studies. The current report presents the results from the pilot phase of the Case Study, which involved six pilot studies adopting standards and recommendations from the discovery phase. The pilots enabled the handling  of concrete examples and the generation of reusable materials tailored to this domain, as well as providing better estimates for the overall costs of adoption for future projects.

Our approach for plant-pollinator data standardisation is based on the widely-used standard for representing biodiversity data, Darwin Core, developed and maintained by the Biodiversity Information Standards (TDWG), in conjunction with a data model and vocabulary proposed by the Brazilian Network of Plant-Pollinator Interactions (REBIPP). The pilot studies also underwent a process of “FAIRification” (i.e., transforming data into a format that adheres to the FAIR data principles) using the Global Biotic Interactions (GloBI, Poelen et al. 2014) platform. Additionally, we present the publishing model for Biotic Interactions developed in collaboration with the Global Biodiversity Information Facility (GBIF), which leads the WorldFAIR Case Study on Biodiversity, as part of the proposed GBIF New Data Model, along with a concrete example of its use by one of the pilots. This effort led to the development of ‘FAIR best practices’ guidelines for sharing plant-pollinator interaction data. The primary focus of this work is to enhance the interoperability of data on plant-pollinator interactions, aligning with WorldFAIR efforts  to develop a Cross-Domain Interoperability Framework. We have successfully promoted the adoption of standards and increased the interoperability of plant-pollinator interactions data, resulting in a process that allows for tracing the provenance of the data, as well as facilitating the reuse of datasets crucial for understanding this essential ecosystem service and its changes due to human impact.

Our effort demonstrates there are several possible paths for FAIRification, tailored to institutional needs, and we have shown that different approaches can contribute to promoting data interoperability and data availability for reuse, which is the ultimate goal of this initiative. Consequently, we have successfully ensured FAIR data for understanding plant-pollinator interactions at biologically-relevant scales for crops, with broad participation from initiatives in Europe, South America, Africa, North America, and elsewhere. We have also established concrete guidelines on FAIR data best practices customised for pollination data, metadata, and other digital objects, promoting the scalable adoption of these standards and FAIR data best practices by multiple initiatives. We believe this effort can assist similar initiatives in adopting interoperability standards for this domain and contribute to our understanding of how plant-pollinator interactions contribute to sustain life on Earth.

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WorldFAIR is funded by the EC HORIZON-WIDERA-2021-ERA-01-41 Coordination and Support Action under Grant Agreement No. 101058393.