cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1 of USP38 exacerbates atrial inflammation, fibrosis, and susceptibility to atrial fibrillation after myocardial infarction in mice
Creators: name: Gong, Yang
name: Yu, Tingting
name: Shuai, Wei
name: Chen, Tao
name: Zhang, Jingjing
name: Huang, He
Publisher: name: figshare
Year: 2023
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Physiology
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences

description: Supplementary Material 1
title: ADCO, Cartulaire de Cîteaux pour les domaines de Beaune (XVe siècle), Cart. 177 (11 H 289), 197 folios, f. 0036
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2015
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire

description: Cartulaire de Cîteaux pour les domaines de Beaune (XVe siècle), Archives départementales de la Côte-d'Or, Cart. 177 (11 H 289), 197 folios, f. 0036, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de Cîteaux pour les possessions d’Izeure (XVe siècle), Archives départementales de la Côte-d'Or, Cart. 177 (11 H 289), 197 folios, f. 0036, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
A feasible "Kochen-Specker" experiment with single particles
Creators: name: Simon, Christoph
name: Zukowski, Marek
name: Weinfurter, Harald
name: Zeilinger, Anton
Publisher: name: arXiv
Year: 2000
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We present a simple experimental scheme which can be used to demonstrate an all-or-nothing type contradiction between non-contextual hidden variables and quantum mechanics. The scheme, which is inspired by recent ideas by Cabello and Garcia-Alcaine, shows that even for a single particle, path and spin information cannot be predetermined in a non-contextual way.
description: 4 pages, 3 figures
Additional file 7: of Purple Brassica oleracea var. capitata F. rubra is due to the loss of BoMYBL2–1 expression
Creators: name: Hayoung Song
name: Hankuil Yi
name: Myungjin Lee
name: Ching-Tack Han
name: Jeongyeo Lee
name: HyeRan Kim
name: Park, Jong-In
name: Ill-Sup Nou
name: Kim, Sun-Ju
name: Yoonkang Hur
Publisher: name: figshare
Year: 2018
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Figure S5. Comparison of different BoMYBL2–1 nucleotide sequences obtained from cabbages. Shaded regions indicate exon sequences. Sequences corresponding to Bol016162 from B. oleracea var. capitata were omitted. (DOCX 31 kb)
Momentum and rest mass of the covariant state of light in a medium
Creators: name: Partanen, Mikko
name: Tulkki, Jukka
Publisher: name: arXiv
Year: 2017
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: Conventionally, theories of electromagnetic waves in a medium assume that only the energy of the field propagates in a transparent medium and the medium is left undisturbed. Consequently, the transport of mass density and the related kinetic and elastic energies of atoms is neglected. We have recently presented foundations of a covariant theory of light propagation in a medium by considering a light wave simultaneously with the dynamics of the medium atoms driven by optoelastic forces between the induced dipoles and the electromagnetic field. In the previously discussed mass-polariton (MP) quasiparticle approach, we considered the light pulse as an isolated coupled state between the photon and matter and showed that the momentum and the transferred mass of MP follow unambiguously from the Lorentz invariance and the fundamental conservation laws of nature. In the present work, we combine the electrodynamics of continuous media and elasticity theory to account for the space- and time dependent dynamics of the light pulse and the associated mass and momentum distributions of the mass density wave (MDW). In this optoelastic continuum dynamics (OCD) approach, we obtain a numerically accurate solution of the Newtonian continuum dynamics of the medium when the light pulse is propagating in it. For an incoming Gaussian light pulse having total energy $E_0$ in vacuum, the OCD simulations of the light pulse propagating in a crystal having refractive index $n$ give the same momentum $p=nE_0/c$ and the transferred mass $δm=(n^2-1)E_0/c^2$ as the MP quasiparticle approach. Since the elastic forces are included in our theory on equal footing with the optical forces, our theory also predicts how the mass and thermal equilibria are re-established by elastic waves.
A new target object for constraining annihilating dark matter
Creators: name: Chan, Man Ho
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: In the past decade, gamma-ray observations and radio observations of our Milky Way and the Milky Way dwarf spheroidal satellite galaxies put very strong constraints on annihilation cross sections of dark matter. In this article, we suggest a new target object (NGC 2976) that can be used for constraining annihilating dark matter. The radio and x-ray data of NGC 2976 can put very tight constraints on the leptophilic channels of dark matter annihilation. The lower limits of dark matter mass annihilating via $e^+e^-$, $μ^+μ^-$ and $τ^+τ^-$ channels are 200 GeV, 130 GeV and 110 GeV respectively with the canonical thermal relic cross section. We suggest that this kind of large nearby dwarf galaxies with relatively high magnetic field can be good candidates for constraining annihilating dark matter in future analysis.
description: Accepted for publication in The Astrophysical Journal
Energy Distribution in Reissner-Nordstrom anti-de Sitter black holes in Moller Prescription
Creators: name: Salti, Mustafa
name: Aydogdu, Oktay
Publisher: name: arXiv
Year: 2006
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: This paper has been removed by arXiv administrators because it plagiarizes gr-qc/0010068, gr-qc/9911018, gr-qc/0303034, and gr-qc/0212018.
description: This submission has been withdrawn by arXiv administrators due to inappropriate text reuse from external sources
Equally-distant partially-entangled alphabet states for quantum channels
Creators: name: Ziman, Mario
name: Buzek, Vladimir
Publisher: name: arXiv
Year: 2000
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Each Bell state has the property that by performing just local operations on one qubit, the complete Bell basis can be generated. That is, states generated by local operations are totally distinguishable. This remarkable property is due to maximal quantum entanglement between the two particles. We present a set of local unitary transformations that generate out of partially entangled two-qubit state a set of four maximally distinguishable states that are mutually equally distant. We discuss quantum dense coding based on these alphabet states.
description: 7 revtex pages, 2 eps figures, to appear in Phys. Rev. A 62, 1 November (2000)
Additional file 1: of iSupport, an online training and support program for caregivers of people with dementia: study protocol for a randomized controlled trial in India
Creators: name: Mehta, Kala
name: Gallagher-Thompson, Dolores
name: Varghese, Mathew
name: Loganathan, Santosh
name: Upasana Baruah
name: Seeher, Katrin
name: Zandi, Diana
name: Dua, Tarun
name: Pot, Anne Margriet
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: SPIRIT 2013 Checklist: recommended items to address in a clinical trial protocol and related documents. (DOC 124Â kb)
Investigation of a 3-D shock wave boundary layer interaction associated with an unswept fin
Creators: name: Carvalho, Jessica Gomes
Publisher: name: No Publisher Supplied
Year: 2024

description: Shock wave boundary layer interactions (SBLI) are a problem prevalent in supersonic aerodynamics that can create unwanted loads on vehicle surfaces. SBLI are often generated on the surfaces of supersonic vehicles and have critical effects on their performance. One such geometry that can generate SBLI is an unswept fin, present in airbreathing engine inlets and aircraft wing- and tail-fuselage junctions. To study this complex phenomenon, multiple parallel-to-flow planes of Stereoscopic Particle Image Velocimetry (SPIV) are used to quantify the flow field about an unswept fin SBLI. The use of SPIV allows for the resolution of three-components of velocity within a planar measurement space, which can also retain a high vector density compared to other methods such as plenoptic and tomographic particle image velocimetry. The fin is placed in a Mach 2.75 flow and generates a 34° out-of-plane oblique shock wave with turbulent boundary layer separation. The data obtained here are collected along four planes to investigate the spanwise growth and evolution of flow features. With laser reflections being a common issue in obtaining near-wall PIV data, these data also explore a slight modification to a pre-existing experimental setup, designed to improve near-surface measurements by offsetting laser flashes away from the cameras’ field of view. Both the fin and flat-plate are machined from acrylic instead of aluminum. Due to its transparent property, the acrylic flat-plate serves as a buffer allowing the laser sheet to pass through so that the inevitable reflections occur within the thickness of the flat-plate. Furthermore, the laser can penetrate the acrylic fin instead of reflecting off of it. This paper presents work examining the undisturbed boundary layer and its interaction with the fin-generated shock wave using this modification to the experimental set up.
Quantum information distributors: Quantum network for symmetric and asymmetric cloning in arbitrary dimension and continuous limit
Creators: name: Braunstein, Samuel L.
name: Buzek, Vladimir
name: Hillery, Mark
Publisher: name: arXiv
Year: 2000
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We show that for any Hilbert-space dimension, the optimal universal quantum cloner can be constructed from essentially the same quantum circuit, i.e., we find a universal design for universal cloners. In the case of infinite dimensions (which includes continuous variable quantum systems) the universal cloner reduces to an essentially classical device. More generally, we construct a universal quantum circuit for distributing qudits in any dimension which acts covariantly under generalized displacements and momentum kicks. The behavior of this covariant distributor is controlled by its initial state. We show that suitable choices for this initial state yield both universal cloners and optimized cloners for limited alphabets of states whose states are related by generalized phase-space displacements.
description: 10 revtex pages, no figures
title: Modeling trophic interactions between parental common murres and capelin off the northeast Newfoundland coast
Creators: name: Buren, A. D.
name: Alonso, M. Koen-
name: Montevecchi, W. A.
name: Anderson, J. T.
name: deYoung, B.
name: Davoren, G. K.
Publisher: name: ASC 2006 - Theme session L
Year: 2024
Subjects: Fisheries and aquaculture

description: No abstracts are to be cited without prior reference to the author.This presentation focuses on trophic interactions between capelin (Mallotus villosus) and its primary avian predator, the common murre (Uria aalge) on Funk Island during the breeding season. Diet is evaluated through parental deliveries to the chicks and prey availability is estimated from pelagic trawl data within the murre's foraging range. Diet composition is assessed using percentage by number (%N), with its confidence limits obtained by bootstrapping. Since the common murre is a capelin specialist and feeds on capelin larger than 100mm (suitable capelin), three prey categories were considered: small capelin (100-140mm total length), large capelin (>140mm total length) and others (prey species other than capelin). Considering the densities of these prey groups as explanatory variables and assuming a multinomial probability distribution for the individual prey deliveries, the common murre's diet is being modeled in two different ways. One is purely statistical and uses a standard multicategory logit model. The second one, derived from ecological theory, estimates the probabilities of consuming different prey categories from a generalized form of the multispecies Holling functional response. Both models describe well the observed diets, but the model with ecological roots has a better fit than the purely statistical one. Furthermore, in years when the abundance of suitable capelin was high the proportions of large and small capelin consumed were not significantly different, while they were in years of low suitable capelin abundance.
Substantial local variation of Seebeck coefficient in gold nanowires
Creators: name: Zolotavin, Pavlo
name: Evans, Charlotte I.
name: Natelson, Douglas
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Nanoscale structuring holds promise to improve thermoelectric properties of materials for energy conversion and photodetection. We report a study of the spatial distribution of the photothermoelectric voltage in thin-film nanowire devices fabricated from single metal. A focused laser beam is used to locally heat the metal nanostructure via a combination of direct absorption and excitation of a plasmon resonance in Au devices. As seen previously, in nanowires shorter than the spot size of the laser, we observe a thermoelectric voltage distribution that is consistent with the local Seebeck coefficient being spatially dependent on the width of the nanostructure. In longer structures, we observe extreme variability of the net thermoelectric voltage as the laser spot is scanned along the length of the nanowire. The sign and magnitude of the thermoelectric voltage is sensitive to the structural defects, metal grain structure, and surface passivation of the nanowire. This finding opens the possibility of improved local control of the thermoelectric properties at the nanoscale.
description: 17 pages, 4 figures, + 15 pages and 12 figures of supplementary material
From impoverishment to empowerment: re-creating healing narratives
Creators: name: Balli, Fabio
Publisher: name: Zenodo
Year: 2023
Subjects: paradigm shift
post-capitalism
socio-economic patterns
collective narratives
collective beliefs
mindset change
social contract
self-consciousness
soft skills
social construct

description: By exploring commoning for the last years, I came to identify different collective narratives that make us perpetuate suffering.

1. The myth of scarcity. This is brought by a dysfunctionnal economy of strokes (Steiner 1971), that means that we learn to search for recognition of the authority, rather than to give and get recognition to and from our peers, which then creates abundance.

2. The myth of competition. The fear of lacking resources brings competition. As we are not in peace within ourselves, we built a socio-legal framework that foster competition and pseudo-rationalism (Capra and Mattei 2015), that is war against those deemed different.

3. The myth of the state and the market. Ignorant of our individual and collective capacities, we rely on external authorities to make decisions for us. Hence we come to believe that companies create jobs, and the state provides us with a safety net. In reality, companies and the state only exist because they extract value from the multitude, in the form of the collective intelligence brought, or taxes for example (Dardot and Laval 2014; Rushkoff, 2019).

4. The myth of materiality. Once aware of these myths, we can explore new avenues through the alliance of play, arts, and meditation for example (Winnicott 2005; Jung 1963; Goenka 2020).

 

Thesis as PDF (95 Mo) – Abstract – Abstract in French – Visual synthesis – Defence presentation – LaTeX files – Zotero
Shell Structure in the Fornax Dwarf Spheroidal Galaxy
Creators: name: Coleman, Matthew
name: Da Costa, G. S.
name: Bland-Hawthorn, Joss
name: Martinez-Delgado, David
name: Freeman, Kenneth C.
name: Malin, David
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present initial results from a wide field photometric survey of the Fornax dwarf spheroidal (dSph) galaxy. The focus here is on a small overdensity of stars located approximately 17 arcmin (670 pc in projection) from the centre of Fornax. Based on imaging data in both V and I bands down to approximately V = 21, the dimensions of the feature are approximately 1.7 arcmin by 3.2 arcmin (68 pc by 128 pc) with an average surface brightness of 25.8 mag/arcsec^2 in V. A follow-up analysis using the deep B and R band data obtained by Stetson et al. (1998) indicates that the overdensity is apparently dominated by a relatively young stellar population with an age of approximately 2 Gyr, though the current data do not rule out the presence of older stars. Our preferred interpretation is that the overdensity represents shell structure in the Fornax dSph galaxy, a phenomenon previously unseen in dwarf galaxies. The shell may be the remnant of a merger with Fornax of a smaller, gas-rich system that occured approximately 2 Gyr ago. The comparitively recent star formation seen in some dSph and dE galaxies may then also be the result of infall of small relatively gas-rich systems.
description: 29 pages, 7 figures. To appear in the February issue of the Astronomical Journal. Version with full-resolution figures available at http://www.mso.anu.edu.au/~coleman/thesis/fornaxpaper/Coleman.pdf
A full-twist inequality for the $ν^+$-invariant
Creators: name: Sato, Kouki
Publisher: name: arXiv
Year: 2017
Subjects: subject: Geometric Topology (math.GT)
subject: FOS: Mathematics
subject: 57M25, 57M27

description: Hom and Wu introduced a knot concordance invariant called $ν^+$, which dominates many concordance invariants derived from Heegaard Floer homology. In this paper, we give a full-twist inequality for $ν^+$. By using the inequality, we extend Wu's cabling formula for $ν^+$ (which is proved only for particular positive cables) to all cables in the form of an inequality. In addition, we also discuss $ν^+$-equivalence, which is an equivalence relation on the knot concordance group. We introduce a partial order on $ν^+$-equivalence classes, and study its relationship to full-twists.
description: 17 pages, 11 figures
Torsion, Scalar Field, Mass and FRW Cosmology
Creators: name: Mahato, Prasanta
Publisher: name: arXiv
Year: 2006
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: In the Einstein-Cartan space $U_4$, an axial vector torsion together with a scalar field connected to a local scale factor have been considered. By combining two particular terms from the SO(4,1) Pontryagin density and then modifying it in a SO(3,1) invariant way, we get a Lagrangian density with Lagrange multipliers. Then under FRW-cosmological background, where the scalar field is connected to the source of gravitation, the Euler-Lagrange equations ultimately give the constancy of the gravitational constant together with only three kinds of energy densities representing mass, radiation and cosmological constant. The gravitational constant has been found to be linked with the geometrical Nieh-Yan density.
Additional file 6: of Comparison of methodological quality rating of systematic reviews on neuropathic pain using AMSTAR and R-AMSTAR
Creators: name: Dosenovic, Svjetlana
name: Kadic, Antonia Jelicic
name: Vucic, Katarina
name: Markovina, Nikolina
name: Pieper, Dawid
name: Puljak, Livia
Publisher: name: figshare
Year: 2018
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Developmental Biology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: AMSTAR rating for each study. (DOCX 211Â kb)
Analytical approximations for the higher energy structure in strong field ionization with inhomogeneous electric fields
Creators: name: Ortmann, L.
name: Landsman, A. S.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Atomic Physics (physics.atom-ph)
subject: FOS: Physical sciences

description: Recently, the emergence of a higher energy structure (HES) due to a spatial inhomogeneity in the laser electric field, as is typically found close to a nano tip, was reported in Phys.~Rev. Letter {\bf 119}, 053204 (2017). For practical applications, such as the characterization of near-fields or the creation of localized sources of monoenergetic electron beams with tunable energies, further insight into the nature of this higher energy structure is needed. Here, we give a closed form analytical approximation to describe the movement of the electron in the inhomogeneous electric field. In particular, we derive a simple scaling law for the location of the HES peak and give a scheme to analytically tune the width of the peak, both of which will prove useful in optimizing the nanostructure size or geometry for creating the HES in experimental settings.
Possibility of Magnetic Mass Detection by the Next Generation of Microlensing Experiments
Creators: name: Rahvar, Sohrab
name: Habibi, Farhang
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We study the possibility of magnetic mass detection by the gravitational microlensing technique. Recently the theoretical effect of magnetic mass in the NUT space on the microlensing light curve has been studied. It was shown that in the low photometric signal to noise and sampling rate of MACHO experiment light curves, no signature of NUT factor has been found. In order to increase the sensitivity of magnetic mass detection, we propose a systematic search for microlensing events, using the currently running alert systems and complementary telescopes for monitoring the Large Magellanic Clouds stars. In this strategy of observation, we obtain the magnetic mass detection efficiency and also the lowest observable limit of the NUT factor. This method of survey for gravitational microlensing detection can also be used as a tool for searching other exotic space-times.
description: 15 pages, 4 figures, Accepted in APJ, modified according to referee's suggestions
title: Difficulties on applying the requirements of Commission Regulation (EC) Nº 1639/2001 in the estimation of discards from Basque Country trawl fleets
Creators: name: Herraiz, Isabel González
name: Ruiz, J.
name: Santurtun, M.
Publisher: name: ASC 2006 - Theme session K
Year: 2024
Subjects: Fisheries and aquaculture

description: No abstracts are to be cited without prior reference to the author.Difficulties on applying the requirements of Commission Regulation (EC) Nº 1639/2001 in the estimation of discards from Basque Country trawl fleets.
The Cygnus X region XXII. A probable HAeBe star with a giant bipolar outflow in DR 16
Creators: name: Behre, Otto P.
name: Wendker, Heinrich J.
name: Higgs, Lloyd A.
name: Landecker, Thomas L.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: From medium-resolution radio images, DR 16 was suspected to be a large cometary nebula. To test this suggestion we obtained a higher resolution (15\arcsec) VLA continuum map. We also analyzed data from the Canadian Galactic Plane Survey in continuum, H I line, and IR. These data were supplemented by published near-infrared (J, H, K) stellar photometric results and MSX 8.28 micrometer data. We suggest that DR 16 is the diffuse H II region of an ongoing star formation site at a distance of about 3 kpc. The complicated radio picture arises from the superposition of diffuse H II with the remains of a giant bipolar outflow. The outflow was generated by a probable Herbig AeBe star, and the lobes are the remnants of its working surfaces. Additional ring-like features are discussed. DR 16 is part of a larger volume of space in the local spiral arm where star formation is an ongoing process.
description: 15 pages, 14 figures, accepted by A&A
Towards coarse graining of discrete Lorentzian quantum gravity
Creators: name: Eichhorn, Astrid
Publisher: name: arXiv
Year: 2017
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: A first step towards implementing a notion of coarse graining in an intrinsically Lorentzian, discrete quantum- gravity approach, namely causal set quantum gravity is taken. It makes use of an abstract notion of scale, based on counting the number of discrete elements. To that end, the space of actions for causal set quantum gravity is written in a matrix-model-like language, and a flow equation for the effective action of the model is derived from the path integral.
description: 11 pages
title: Influence of fisheries discards and environmental variables on seabirds in northern Spanish waters (Cantabrian Sea)
Creators: name: Abad, Esther
name: Valeiras, X.
name: Serrano, A.
name: Sánchez, F.
name: Preciado, I.
name: Olaso, I.
Publisher: name: ASC 2006 - Theme session L
Year: 2024
Subjects: Fisheries and aquaculture

description: No abstracts are to be cited without prior reference to the author.Influence of fisheries discards and environmental variables on seabirds in northern Spanish waters (Cantabrian Sea).
Additional file 1 of A genome-wide survey of mutations in the Jurkat cell line
Creators: name: Gioia, Louis
name: Azeem Siddique
name: Head, Steven
name: Salomon, Daniel
name: Su, Andrew
Publisher: name: figshare
Year: 2018
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Supplementary Materials. Supplementary figures S1 to S8 and captions for supplementary tables S1 and S2. (PDF 2361 kb)
Molecular-Coherent-States and Molecular-Fundamental-States
Creators: name: Irac-Astaud, Michele
Publisher: name: arXiv
Year: 2000
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: New families of Molecular-Coherent-States are constructed by the Perelomov group-method. Each family is generated by a Molecular-Fundamental-State that depends on an arbitrary sequence of complex numbers cj. Two of these families were already obtained by D.Janssen and by J. A. Morales, E. Deumens and Y. Ohrn. The properties of these families are investigated and we show that most of them are independent on the cj.
description: 26 pages latex, to be published in Rev. Math. Phys
Additional file 1: of MEGADOCK-Web: an integrated database of high-throughput structure-based protein-protein interaction predictions
Creators: name: Hayashi, Takanori
name: Matsuzaki, Yuri
name: Yanagisawa, Keisuke
name: Ohue, Masahito
name: Akiyama, Yutaka
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Plant Biology

description: Supplementary Figures. PDF file containing various figures with detailed MEGADOCK performance and MEGADOCK-Web screenshots. (PDF 819Â kb)
On the van Cittert - Zernike theorem for intensity correlations and its applications
Creators: name: Gureyev, Timur E.
name: Kozlov, Alexander
name: Paganin, David M.
name: Nesterets, Yakov I.
name: De Hoog, Frank
name: Quiney, Harry M.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: A reciprocal relationship between the autocovariance of the light intensity in the source plane and in the far-field detector plane is presented in a form analogous to the classical van Cittert - Zernike theorem, but involving intensity correlation functions. A "classical" version of the reciprocity relationship is considered first, based on the assumption of circular Gaussian statistics of the complex amplitudes in the source plane. The result is consistent with the theory of Hanbury Brown - Twiss interferometry, but it is shown to be also applicable to estimation of the source size or the spatial resolution of the detector from the noise power spectrum of flat-field images. An alternative version of the van Cittert - Zernike theorem for intensity correlations is then derived for a quantized electromagnetic beam in a coherent state, which leads to Poisson statistics for the intrinsic intensity of the beam.
Finite Action Klein-Gordon Solutions on Lorentzian Manifolds
Creators: name: Kozlov, V. V.
name: Volovich, I. V.
Publisher: name: arXiv
Year: 2006
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: Differential Geometry (math.DG)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: The eigenvalue problem for the square integrable solutions is studied usually for elliptic equations. In this note we consider such a problem for the hyperbolic Klein-Gordon equation on Lorentzian manifolds. The investigation could help to answer the question why elementary particles have a discrete mass spectrum. An infinite family of square integrable solutions for the Klein-Gordon equation on the Friedman type manifolds is constructed. These solutions have a discrete mass spectrum and a finite action. In particular the solutions on de Sitter space are investigated.
description: 8 pages
Topology optimization of multiple anisotropic materials, with application to self-assembling diblock copolymers
Creators: name: Regazzoni, Francesco
name: Parolini, Nicola
name: Verani, Marco
Publisher: name: arXiv
Year: 2017
Subjects: subject: Numerical Analysis (math.NA)
subject: Optimization and Control (math.OC)
subject: FOS: Mathematics

description: We propose a solution strategy for a multimaterial minimum compliance topology optimization problem, which consists in finding the optimal allocation of a finite number of candidate (possibly anisotropic) materials inside a reference domain, with the aim of maximizing the stiffness of the body. As a relevant and novel application we consider the optimization of self-assembled structures obtained by means of diblock copolymers. Such polymers are a class of self-assembling materials which spontaneously synthesize periodic microstructures at the nanoscale, whose anisotropic features can be exploited to build structures with optimal elastic response, resembling biological tissues exhibiting microstructures, such as bones and wood. For this purpose we present a new generalization of the classical Optimality Criteria algorithm to encompass a wider class of problems, where multiple candidate materials are considered, the orientation of the anisotropic materials is optimized, and the elastic properties of the materials are assumed to depend on a scalar parameter, which is optimized simultaneously to the material allocation and orientation. Well-posedness of the optimization problem and well-definition of the presented algorithm are narrowly treated and proved. The capabilities of the proposed method are assessed through several numerical tests.
Additional file 6: of Purple Brassica oleracea var. capitata F. rubra is due to the loss of BoMYBL2–1 expression
Creators: name: Hayoung Song
name: Hankuil Yi
name: Myungjin Lee
name: Ching-Tack Han
name: Jeongyeo Lee
name: HyeRan Kim
name: Park, Jong-In
name: Ill-Sup Nou
name: Kim, Sun-Ju
name: Yoonkang Hur
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Figure S3. Results of genomic DNA-PCR preformed to detect the presence or absence of genes regulating anthocyanin biosynthesis other than BoMYBL2–1. A: B. oleracea var. capitata F. alba or rubra varieties with contrasting characteristics in anthocyanin accumulation were selected for analysis; varieties with green and purple colors are indicated in green or purple. B: PCR analysis of other varieties of B. oleracea. The color of each variety is indicated above each lane. (DOCX 293 kb)
Discontinuous Galerkin methods and their adaptivity for the tempered fractional (convection) diffusion equations
Creators: name: Wang, Xudong
name: Deng, Weihua
Publisher: name: arXiv
Year: 2017
Subjects: subject: Numerical Analysis (math.NA)
subject: FOS: Mathematics

description: This paper focuses on the adaptive discontinuous Galerkin (DG) methods for the tempered fractional (convection) diffusion equations. The DG schemes with interior penalty for the diffusion term and numerical flux for the convection term are used to solve the equations, and the detailed stability and convergence analyses are provided. Based on the derived posteriori error estimates, the local error indicator is designed. The theoretical results and the effectiveness of the adaptive DG methods are respectively verified and displayed by the extensive numerical experiments. The strategy of designing adaptive schemes presented in this paper works for the general PDEs with fractional operators.
description: 31 pages, 5 figures
title: Estimating Bycatch in United States Commercial Fisheries
Creators: name: Karp, W. A.
name: Desfosse, L.
name: Barkas, J.
name: Brooke, S.
Publisher: name: ASC 2006 - Theme session K
Year: 2024
Subjects: Fisheries and aquaculture

description: No abstracts are to be cited without prior reference to the author.The Magnuson-Stevens Fishery Conservation and Management Act, the Endangered Species Act, Marine Mammal Protection Act, and international agreements identify the stewardship role of the National Marine Fisheries Service (NOAA Fisheries) in leading the collaborative effort to monitor and reduce the bycatch and discard of living marine resources within the United States EEZ. NOAA Fisheries has initiated development of a national report to provide a comprehensive summary of regional and national bycatch estimates in U.S. commercial fisheries. The initial report will quantify the impacts and amounts of bycatch for fish, marine mammals, sea turtles and sea birds in priority fisheries. Estimates will be based on information collected by fisheries observers and reports submitted by fishers and fish processing companies. Observer data is utilized for a variety of assessment and monitoring purposes and, when available, is considered the most accurate source of information for monitoring fisheries bycatch. For fisheries with little or no observer coverage, industry reports are either the primary or only source of data for bycatch and discard estimation. The NOAA Fisheries Bycatch Report will address regional bycatch issues, provide background information on regional fisheries, consider the impacts of bycatch on fisheries and ecosystems, and describe methods which have potential for reducing bycatch. Bycatch mortality for specific fisheries will be assessed and the report will be updated periodically. This report will serve as a strategic document to guide future monitoring and data collection, and provide input for setting management goals.
Arbitrable Blind Quantum Computation
Creators: name: Sato, Go
name: Koshiba, Takeshi
name: Morimae, Tomoyuki
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Blind quantum computation is a two-party protocol which involves a server Bob who has rich quantum computational resource and provides quantum computation service and a client Alice who wants to delegate her quantum computation to Bob without revealing her quantum algorithms and her input to (resp., output from) the algorithms. Since Bob may be truant and pretend to execute some computation, Alice wants to verify Bob's computation. Verifiable blind quantum computation enables Alice to check whether Bob is cheating or not. If Bob is cheating and claims his innocence, Alice can refute the denial of Bob's cheating but she cannot persuade any others that Bob is cheating. In this paper, we incorporate arbitrators as the third party into blind quantum computation to resolve the above problem and give an arbitrable blind quantum computation scheme.
description: 4 pages
Sub-Quantum Dark Energy
Creators: name: Gonzalez-Diaz, Pedro F.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: A procedure is considered which upgrades the Lagrangian description of quantum relativistic particles to the Lagrangian of a proper field theory in the case that the Klein-Gordon wave equation is classically interpreted in terms of a relativistic sub-quantum potential. We apply the resulting field theory to cosmology and show that the relativistic version of the Bohm's subquantum potential which can be associated with a homogeneous and isotropic distribution of particles behaves like though it was a cosmological constant responsible for the current accelerating expansion of the universe, at least in the limit where the field potential vanishes.
description: 7 pages, RevTex, some minor changes and references added, to appear in Phys. Rev. D
Alpha-like clustering in $^{20}$Ne from a quartetting wave function approach
Creators: name: Röpke, G.
name: Schuck, P.
name: Xu, C.
name: Ren, Z.
name: Lyu, M.
name: Zhou, B.
name: Funaki, Y.
name: Horiuchi, H.
name: Tohsaki, A.
name: Yamada, T.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Quartetting ($α$-like clustering) occurs in low density matter ($\le 0.03$ fm$^{-3}$) which exists, e.g., at the surface of nuclei. It is of interest for the $α$ preformation to calculate the $α$ decay of heavy nuclei such as $^{212}$Po, but also in light nuclei (e.g., $^{20}$Ne) which shows strong signatures of quartetting. We analyze the intrinsic structure of the $α$-like cluster and the center of mass motion of the quartet, in particular the role of Pauli blocking. The Thomas-Fermi model for the (daughter) core nucleus is improved introducing quasiparticle nucleon states. Calculations performed for harmonic oscillator basis states show that the effective potential for the quartet center of mass motion remains nearly constant within the core nucleus. The relation to the THSR (Tohsaki-Horiuchi-Schuck-Röpke) approach is discussed.
description: 26 pages, 9 figures
title: An approach to modelling the influence of harp seal (Phoca groenlandica) predation on decline and recovery of the Northern Gulf of St Lawrence cod (Gadus morhua)
Creators: name: Duplisea, Daniel E.
name: Hammill, Mike
Publisher: name: ASC 2006 - Theme session L
Year: 2024
Subjects: Fisheries and aquaculture

description: No abstracts are to be cited without prior reference to the author.The Canada-Greenland harp seal population is currently near an all time high while at the same time eastern Canadian cod stocks are at very low levels. Consequently, harp seal predation has been implicated as a possible reason for cod population decline and subsequent lack of recovery, though there is not strong evidence to support or refute this hypothesis. In order to evaluate the role of harp seal predation on cod populations, we developed a cod population cohort model for the Northern Gulf of St. Lawrence stock and partitioned mortality into a harp seal predation component and a residual component. We fitted this model to data from 1974-2005 allowing parameters related to harp seal predation, cod residual mortality and recruitment to vary. We subsequently came up with a series of parameters representing fits to different sub-periods reflecting productivity conditions for the cod. We performed stochastic projections for cod recovery by sampling historical per capita recruitment and under three scenarios of harp seal population size. It proved difficult to obtain reliable parameter sets from fitting the historical data and projections show that with some parameter sets, reductions in seal population numbers would make small improvement in recovery time for the cod population while with other parameter sets, there would be little effect; therefore, a major difficulty in obtaining useful results from this analysis lays in deciding which parameter set applies to the projection period. A full Bayesian implementation of this model might be a means to overcome this difficulty.
Learning how to learn: an adaptive dialogue agent for incrementally learning visually grounded word meanings
Creators: name: Yu, Yanchao
name: Eshghi, Arash
name: Lemon, Oliver
Publisher: name: arXiv
Year: 2017
Subjects: subject: Computation and Language (cs.CL)
subject: Artificial Intelligence (cs.AI)
subject: Machine Learning (cs.LG)
subject: Robotics (cs.RO)
subject: FOS: Computer and information sciences

description: We present an optimised multi-modal dialogue agent for interactive learning of visually grounded word meanings from a human tutor, trained on real human-human tutoring data. Within a life-long interactive learning period, the agent, trained using Reinforcement Learning (RL), must be able to handle natural conversations with human users and achieve good learning performance (accuracy) while minimising human effort in the learning process. We train and evaluate this system in interaction with a simulated human tutor, which is built on the BURCHAK corpus -- a Human-Human Dialogue dataset for the visual learning task. The results show that: 1) The learned policy can coherently interact with the simulated user to achieve the goal of the task (i.e. learning visual attributes of objects, e.g. colour and shape); and 2) it finds a better trade-off between classifier accuracy and tutoring costs than hand-crafted rule-based policies, including ones with dynamic policies.
description: 10 pages, RoboNLP Workshop from ACL Conference
Quantum gravitational decoherence of matter waves
Creators: name: Wang, Charles H. -T.
name: Bingham, Robert
name: Mendonca, J. Tito
Publisher: name: arXiv
Year: 2006
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: One of the biggest unsolved problems in physics is the unification of quantum mechanics and general relativity. The lack of experimental guidance has made the issue extremely evasive, though various attempts have been made to relate the loss of matter wave coherence to quantum spacetime fluctuations. We present a new approach to the gravitational decoherence near the Planck scale, made possible by recently discovered conformal structure of canonical gravity. This leads to a gravitational analogue of the Brownian motion whose correlation length is given by the Planck length up to a scaling factor. With input from recent matter wave experiments, we show that the minimum value of this factor to be well within the expected range for quantum gravity theories. This suggests that the sensitivities of advanced matter wave interferometers may be approaching the fundamental level due to quantum spacetime fluctuations and that investigating Planck scale physics using matter wave interferometry may become a reality in the near future.
description: 8 pages; final version to appear in CQG as a letter
Additional file 5: of Comparison of methodological quality rating of systematic reviews on neuropathic pain using AMSTAR and R-AMSTAR
Creators: name: Dosenovic, Svjetlana
name: Kadic, Antonia Jelicic
name: Vucic, Katarina
name: Markovina, Nikolina
name: Pieper, Dawid
name: Puljak, Livia
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: List of excluded studies with reasons. (DOCX 296Â kb)
Training an adaptive dialogue policy for interactive learning of visually grounded word meanings
Creators: name: Yu, Yanchao
name: Eshghi, Arash
name: Lemon, Oliver
Publisher: name: arXiv
Year: 2017
Subjects: subject: Computation and Language (cs.CL)
subject: Artificial Intelligence (cs.AI)
subject: Machine Learning (cs.LG)
subject: Robotics (cs.RO)
subject: FOS: Computer and information sciences

description: We present a multi-modal dialogue system for interactive learning of perceptually grounded word meanings from a human tutor. The system integrates an incremental, semantic parsing/generation framework - Dynamic Syntax and Type Theory with Records (DS-TTR) - with a set of visual classifiers that are learned throughout the interaction and which ground the meaning representations that it produces. We use this system in interaction with a simulated human tutor to study the effects of different dialogue policies and capabilities on the accuracy of learned meanings, learning rates, and efforts/costs to the tutor. We show that the overall performance of the learning agent is affected by (1) who takes initiative in the dialogues; (2) the ability to express/use their confidence level about visual attributes; and (3) the ability to process elliptical and incrementally constructed dialogue turns. Ultimately, we train an adaptive dialogue policy which optimises the trade-off between classifier accuracy and tutoring costs.
description: 11 pages, SIGDIAL 2016 Conference
Additional file 1: of Clinical providersâ experiences with returning results from genomic sequencing: an interview study
Creators: name: Wynn, Julia
name: Lewis, Katie
name: Amendola, Laura
name: Bernhardt, Barbara
name: Sawona Biswas
name: Manasi Joshi
name: McMullen, Carmit
name: Scollon, Sarah
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Pre-interview email and interview script. (DOCX 99 kb)