cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1: of Stakeholder perspectives on the implementation of genetic carrier screening in a changing landscape
Creators: name: Holtkamp, Kim
name: Vos, Evelien
name: Rigter, Tessel
name: Lakeman, Phillis
name: Henneman, Lidewij
name: Cornel, Martina
Publisher: name: Figshare
Year: 2017
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Title of data: Semi-structured interview guide. This additional file includes the complete interview guide containing: an introduction to the interview study, the interview questions, and the closure of the interview. (DOCX 22Â kb)
Ophiochiton Lyman 1878
Creators: name: Stöhr, Sabine
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Ophiuroidea
Amphilepidida
Ophionereididae
Ophiochiton

description: Genus Ophiochiton Lyman, 1878
Fig. 24A–C
Type species
Ophiochiton fastigatus Lyman, 1878.
Examined species
Ophiochiton fastigatus.
Oral GP
Externally visible as large, round scales, but not examined.
Adradial GP
Weakly cleaver-shaped, flat, blade-like proximal part, distal end depressed with high edges, a large rough patch on adradial surface towards dorsal edge, and a large hole in middle of distal part on adradial surface.
Abradial GP
Hockey-stick-shaped, blade-like, flat, as long as adGP, distal end angled, pointed, distal dorso-adradial edge with depression. Lines abradial edge of genital slit (= part of edge of interradial disc).
Oral shields
Not examined.
Radial shield
Not examined.
Remarks
The available pre-existing images allow only limited assessment of the articular structures of the adradial GP. Martynov (2010) described them as a condyle bordered by a low ridge but without figures, whereas Matsumoto (1917) wrote that the radial shield and adradial GP articulate with two condyles and one pit. The images presented here appear to be the first published SEM images of genital plates of Ophiochiton.
description: Published as part of Stöhr, Sabine, 2024, Taxonomic analysis of the genital plates and associated structures in Ophiuroidea (Echinodermata), pp. 1-98 in European Journal of Taxonomy 933 on page 52, DOI: 10.5852/ejt.2024.933.2525, http://zenodo.org/record/11198874
Additional file 2. of Challenges and contributions of crop production in agro-pastoral systems of Borana Plateau, Ethiopia
Creators: name: Abera Tilahun
name: Beyene Teklu
name: Hoag, Dana
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology

description: The area of Borana Zone which was assessed by this study. (PDF 1416 kb)
Ophioplax Lyman 1875
Creators: name: Stöhr, Sabine
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Ophiuroidea
Amphilepidida
Ophionereididae
Ophioplax

description: Genus Ophioplax Lyman, 1875
Fig. 24D–J
Type species
Ophioplax ljungmani Lyman, 1875.
Examined species
Ophioplax lamellosa Matsumoto, 1915.
Oral GP
Not examined, in situ obscured by granules, but laterally at oral shield a large scale discernible at either side, considered as oral GP.
Adradial GP
Proximal half bar-like, distally weakly cleaver-shaped with wide dorsal and ventral processes; rounded distal part offset from proximal bar by a kink. Articular structure a prominent round distal condyle, bordered by a deep groove and wide edge. Proximal to condyle on dorsal side of offset part a large patch of finer meshed stereom.
Abradial GP
Sabre-shaped, flat, thin, ventral edge convex, dorsal edge slightly concave, long concave distal articular structure.
Oral shields
Flat, on distal part a weak spur on each side, offsetting distal lobe from proximal part. Madreporite inner side inflated in middle, two lateral distal spurs, flat proximal margins, large opening in distal lobe.
Radial shield
Low distal condyle near adradial edge, distally bordered by short groove. Proximal to condyle a large oval patch of finer stereom.
description: Published as part of Stöhr, Sabine, 2024, Taxonomic analysis of the genital plates and associated structures in Ophiuroidea (Echinodermata), pp. 1-98 in European Journal of Taxonomy 933 on pages 52-54, DOI: 10.5852/ejt.2024.933.2525, http://zenodo.org/record/11198874
Non-invasive approaches for 3D Reconstruction of tree root systems in urban environments
Creators: name: Casolare, Rosangela
name: Sferra, Gabriella
name: Ricciardi, Stefano
name: Oliveto, Rocco
name: Scippa, Gabriella Stefania
Publisher: name: F1000 Research Limited
Year: 2024

description: Trees play a vital role in promoting biodiversity within urban environments by providing habitat, food, and shelter to various animal species, while also functioning as essential “green infrastructure” that delivers a range of ecosystem services. The establishment, monitoring, and management of biodiversity centered around trees are crucial for ensuring healthy and sustainable urban ecosystems.

The health and stability of trees are closely linked to the condition of their root systems. Therefore, analyzing the morphology and physiology of tree roots is fundamental for maintaining ecological balance. However, in urban settings, trees face a broader range of abiotic and biotic stresses compared to natural environments. Root systems in cities often encounter poor-quality soils, limited soil volume, and physical barriers, making their health particularly vulnerable.

Currently, the most common method for studying root systems involves excavation and soil removal, which is invasive and may cause harm. As such, the need for non-invasive techniques is becoming increasingly urgent. In geophysical sciences, powerful, close-range remote sensing technologies are already being used to detect subsurface objects, such as roots and pipes, by analyzing changes in physical properties. Ground-penetrating radar (GPR) and electrical resistivity tomography (ERT) are two non-destructive methods that have shown significant potential for imaging and reconstructing buried structures in three dimensions.

Nevertheless, the accuracy and efficacy of these techniques in relation to root morphology and architecture, are often hindered by the lack of standardized protocols for data analysis and interpretation. In this context, accurate 3D reconstruction, based on 2D sections from radargrams (graphical representations of the acquired signals), is essential for correctly interpreting the data and identifying root patterns.

As part of the Italian Recovery and Resilience National Plan (RRNP), spearheaded by the National Biodiversity Future Centre (NBFC) of which the University of Molise is partner, we aim to develop a non-invasive automated tool to reconstruct 3D models of tree root systems for monitoring urban biodiversity. At this scope we will evaluate and compare the models resulting from GPR and ERT signals, with those obtained through laser scanning techniques post-excavation, ensuring accurate representation and enhanced understanding of urban root system dynamics.
Additional file 4: Figure S2. of RNA-seq and metabolomic analyses of Akt1-mediated muscle growth reveals regulation of regenerative pathways and changes in the muscle secretome
Creators: name: Chia-Ling Wu
name: Satomi, Yoshinori
name: Walsh, Kenneth
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: A schematic representation of gene expression changes in the oxidative phosphorylation pathway. (PDF 590Â kb)
Additional file 4: Figure S2. of RNA-seq and metabolomic analyses of Akt1-mediated muscle growth reveals regulation of regenerative pathways and changes in the muscle secretome
Creators: name: Chia-Ling Wu
name: Satomi, Yoshinori
name: Walsh, Kenneth
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: 69999 Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences

description: A schematic representation of gene expression changes in the oxidative phosphorylation pathway. (PDF 590Â kb)
Amphiura Forbes 1843
Creators: name: Stöhr, Sabine
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Ophiuroidea
Amphilepidida
Amphiuridae
Amphiura

description: Genus Amphiura Forbes, 1843
Fig. 25A–R
Type species
Amphiura chiajei Forbes, 1843.
Examined species
Amphiura chiajei, A. filiformis (O.F. Müller, 1776).
Oral GP
Amphiura chiajei: comma-shaped, flat, with oval proximal end, thin, needle-like appendix on inner distal end curved towards proximal end. Amphiura filiformis: elongated, curved or straight (in same individual), proximal end thickened, without distal needle-like appendix. Paired plates meet under the oral shield with convex edges towards each other (A. chiajei).
Adradial GP
Distal end widened with lateral lobes, long bar-like proximal shank, laterally curved with distal end above arm vertebrae, left and right plate almost meeting. Abradial distal lobe with dense, smooth, flat articular structure meeting abGP, distal end with protruding edge and curved depression with single round condyle meeting condyle on radial shield.
Abradial GP
Sabre-shaped, flat, thin, narrow blade, curved with dorsal edge concave, ventral edge convex, with longitudinal dorsal rim, at dorsal distal end a denser, smooth and slightly concave articular structure matching lobe on adGP, straight distalmost edge also joining distal end of adGP. Proximal end crosses proximal end of adGP. As long as adGP.
Oral shields
Inner side proximal part thickened, distal part thin, flat. Madreporite all over thicker, only margins thin, large opening in distal half, narrow slit in one proximolateral part.
Radial shield
Inner side distal end with large domed condyle, bordered by long narrow dorsal groove, proximal to condyle a large oval patch with finer stereom.
Remarks
Oral GP are visible externally in situ as large scale-like ossicles in Amphipholis squamata (Delle Chiaje, 1828), Amphioplus congensis (Studer, 1882), Acrocnida brachiata (Montagu, 1804) and in Silax cf. abditus Clark, 1970 (Stöhr & O’Hara 2021: fig. 2e–f). In A. squamata, the adradial GP has a single distal lobe that articulates with the abradial GP, a single prominent condyle and a groove (Fig. 25S), similar to Amphiura. The abradial GP in A. squamata is sabre-like flat with longitudinal rim, not as strongly curved as in Amphiura. The oral GP of the two examined species of Amphiura differ greatly in shape and more data are needed to understand the variability of these ossicles. Perhaps, the soft, often scale-less ventral disc of A. filiformis has led to the evolution of the elongated oral GP for support of the genital slit.
description: Published as part of Stöhr, Sabine, 2024, Taxonomic analysis of the genital plates and associated structures in Ophiuroidea (Echinodermata), pp. 1-98 in European Journal of Taxonomy 933 on pages 54-56, DOI: 10.5852/ejt.2024.933.2525, http://zenodo.org/record/11198874
Additional file 1: Figure S1. of Municipal resources and patient outcomes through the first year after a hip fracture
Creators: name: Ruths, Sabine
name: Baste, Valborg
name: Bakken, Marit
name: Engesæter, Lars
name: Lie, Stein
name: Siren Haugland
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology

description: Health-related quality of life (EQ-5D-3 L); patient share with poorest outcomes. Legend: Preoperative (blue columns) and 12 months postoperative (red columns). (PDF 167 kb)
TOSHKENT VILOYATIDA GASTRONOMIK TURIZMNI RIVOJLANTIRISH ISTIQBOLLARI
Creators: name: Irgashev, To'lqin
name: Ro'zimboyev, Husniddin
Publisher: name: Zenodo
Year: 2024

description: Ushbu tezis Toshkent viloyatida gastronomik turizmni rivojlantirish istiqbollarini o‘rganishga qaratilgan. Tadqiqotda gastronomik turizmning mohiyati, uning turizm sohasidagi o‘rni va mamlakat iqtisodiyotiga ta'siri tahlil qilindi. Xususan, Toshkent viloyatining gastronomik salohiyati va uning turizmni rivojlantirishdagi roli ko‘rib chiqildi. Viloyatning turli hududlaridagi milliy taomlar, ularning tarixi, madaniyati va o‘ziga xos xususiyatlari o‘rganilib, gastronomik turizmni rivojlantirish uchun zarur bo‘lgan infratuzilma, marketing strategiyalari va ilg‘or tajribalar tahlil etiladi. Tadqiqotda Toshkent viloyatining gastronomik turizm salohiyatini maksimal darajada oshirish uchun takliflar va tavsiyalar ishlab chiqildi.
Additional file 1: of Difficulties experienced by veterinarians when communicating about emerging zoonotic risks with animal owners: the case of Hendra virus
Creators: name: Mendez, Diana
name: BĂźttner, Petra
name: Kelly, Jenny
name: Nowak, Madeleine
name: Rick Speare (Posthumously)
Publisher: name: Figshare
Year: 2017
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 60506 Virology

description: Interview Questionnaire Phase 1. (DOCX 96 kb)
Additional file 1: of Difficulties experienced by veterinarians when communicating about emerging zoonotic risks with animal owners: the case of Hendra virus
Creators: name: Mendez, Diana
name: BĂźttner, Petra
name: Kelly, Jenny
name: Nowak, Madeleine
name: Rick Speare (Posthumously)
Publisher: name: Figshare
Year: 2017
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: Virology

description: Interview Questionnaire Phase 1. (DOCX 96 kb)
Amphilepis Ljungman 1867
Creators: name: Stöhr, Sabine
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Ophiuroidea
Amphilepidida
Amphilepididae
Amphilepis

description: Genus Amphilepis Ljungman, 186
Fig. 26
Type species
Amphiura norvegica Ljungman, 1865.
Examined species
Amphilepis norvegica.
Oral GP
Not identified among small disc scales near oral shields.
Adradial GP
Bar-like, curved, proximal end tailfin-like broadened and pointed or rounded, abradial ventrolateral edge with fin-like process, distal end with adradial condyle, bordered by deep groove on abradial side, proximal to condyle a large round patch of almost imperforate stereom, edges extending disc-like from main plate.
Abradial GP
Thin, flat, half-circular with concave adradial edge, strongly convex abradial edge, straight adradial articular edge to adGP. Part of ventral disc, encircling small genital opening. About ⅔ of length of adGP.
Oral shields
Inner side flat, with horizontal ridge across middle. Madreporite with large oval opening in centre.
Radial shield
Inner side with distal large domed condyle, bordered by curved, wide distal ledge, proximal to condyle an oval, almost imperforate patch.
description: Published as part of Stöhr, Sabine, 2024, Taxonomic analysis of the genital plates and associated structures in Ophiuroidea (Echinodermata), pp. 1-98 in European Journal of Taxonomy 933 on page 56, DOI: 10.5852/ejt.2024.933.2525, http://zenodo.org/record/11198874
Siphonoecetini Just 1983
Creators: name: Just, Jean
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Amphipoda
Ischyroceridae

description: Siphonoecetini Just, 1983
Siphonoecetinae Just, 1983
Siphonoecetini Just, 1983,— Myers and Lowry, 2003
Cephaloecetes Just, 2012
description: Published as part of Just, Jean, 2017, Siphonoecetini Just, 1983 (Crustacea, Amphipoda, Ischyroceridae) 11: Cephaloecetes schioettei sp. nov. from The Philippines, pp. 296-300 in Zootaxa 4272 (2) on page 297, DOI: 10.11646/zootaxa.4272.2.11, http://zenodo.org/record/583937
Additional file 1: of Bmp-12 activates tenogenic pathway in human adipose stem cells and affects their immunomodulatory and secretory properties
Creators: name: Zarychta-WiĹNiewska, Weronika
name: Burdzinska, Anna
name: Kulesza, Agnieszka
name: Gala, Kamila
name: Kaleta, Beata
name: Zielniok, Katarzyna
name: Siennicka, Katarzyna
name: Sabat, Marek
name: Paczek, Leszek
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Study design scheme. Diagram shows the steps in the course of the study. After 7Â days of culture with or without BMP-12 supernatants were collected and cells harvested. Depending on the requirements of each experiment cells were plated in 96- or 24-well plate. For analysis of gene expression RNA was isolated immediately after the end of treatment. (PDF 686Â kb)
Ophiactis Lutken 1856
Creators: name: Stöhr, Sabine
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Ophiuroidea
Amphilepidida
Ophiactidae
Ophiactis

description: Genus Ophiactis Lütken, 1856
Fig. 27
Type species
Ophiactis krebsii Lütken, 1856
= Ophilepis savignyi Müller & Troschel, 1842.
Examined species
Ophiactis abyssicola (M. Sars, 1861), O. savignyi.
Oral GP
Drop-shaped, round with small lobe at one end (unknown if proximal or distal). (Only examined in O. abyssicola.)
Adradial GP
Bar-like, with longitudinal dorsal furrow, distally widened, somewhat thicker than proximal shank, single condyle bordered by deep groove, proximal to condyle a protruding patch of finer stereom articulating with abGP, separated from condyle by deep groove, forming wrench-shaped adradial distal end.
Abradial GP
Two thirds as long as adGP, thin, broadly sickle-shaped, strongly convex ventral edge, distally twice as wide as proximally, distal edge straight and articulating with adGP.
Oral shields
Distal half of inner side thickened, proximal half flat and thin. Madreporite thick, lateral margins flat, two large openings, one in centre, one offset from centre in proximal half.
Radial shield
Inner side with distal condyle, bordered by curved groove, proximal to condyle a round, rough patch.
Remarks
The presence of oral GPs was also observed externally in O. macrolepidota Marktanner-Turneretscher, 1887 and O. savignyi. These fissiparous species are not well suited for the examination of dissociated ossicles, because most individuals are a composite of parts in different stages of regeneration, and therefore the ossicles vary considerably in size and shape within an individual.
description: Published as part of Stöhr, Sabine, 2024, Taxonomic analysis of the genital plates and associated structures in Ophiuroidea (Echinodermata), pp. 1-98 in European Journal of Taxonomy 933 on pages 56-58, DOI: 10.5852/ejt.2024.933.2525, http://zenodo.org/record/11198874
Additional file 3: of Biomarkers for the detection of renal fibrosis and prediction of renal outcomes: a systematic review
Creators: name: Mansour, Sherry
name: Puthumana, Jeremy
name: Coca, Steven
name: Gentry, Mark
name: Chirag Parikh
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy

description: Patient populations and renal outcomes assessed in stage I and stage II of the systematic review. The above table shows the heterogeneity in the data with varying patient populations and different operational definitions of worsening renal function. (DOC 43 kb)
Additional file 1: Table S1. of Characteristics and longitudinal progression of chronic obstructive pulmonary disease in GOLD B patients
Creators: name: Lawrence, Philip
name: Kolsum, Umme
name: Gupta, Vandana
name: Donaldson, Gavin
name: Singh, Richa
name: Barker, Bethan
name: George, Leena
name: Webb, Adam
name: Brookes, Anthony
name: Brightling, Christopher
name: Wedzicha, Jadwiga
name: Singh, Dave
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Baseline characteristics of patients categorised as GOLD C and D. (DOCX 17 kb)
Skeletal muscle cystathionine γ-lyase deficiency promotes obesity and insulin resistance and results in hyperglycemia and skeletal muscle injury upon HFD in mice
Creators: name: Lu, Jiani
name: Tang, Zhengshan
name: Xu, Miaomiao
name: Lu, Jianqiang
name: Wang, Fengmei
name: Ni, Xin
name: Wang, Changnan
name: Yu, Bo
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Astronomical and Space Sciences not elsewhere classified
subject: Hematology
subject: Virology
subject: Computational Biology

description: The objective of this study was to investigate whether skeletal muscle cystathionine γ-lyase (CTH) contributes to high-fat diet (HFD)-induced metabolic disorders using skeletal muscle Cth knockout (CthΔskm) mice. The CthΔskm mice and littermate Cth-floxed (Cthf/f) mice were fed with either HFD or chow diet for 13 weeks. Metabolomics and transcriptome analysis were used to assess the impact of CTH deficiency in skeletal muscle. Metabolomics coupled with transcriptome showed that CthΔskm mice displayed impaired energy metabolism and some signaling pathways linked to insulin resistance (IR) in skeletal muscle although the mice had normal insulin sensitivity. HFD led to reduced CTH expression and impaired energy metabolism in skeletal muscle in Cthf/f mice. CTH deficiency and HFD had some common pathways enriched in the aspects of amino acid metabolism, carbon metabolism, and fatty acid metabolism. CthΔskm+HFD mice exhibited increased body weight gain, fasting blood glucose, plasma insulin, and IR, and reduced glucose transporter 4 and CD36 expression in skeletal muscle compared to Cthf/f+HFD mice. Impaired mitochondria and irregular arrangement in myofilament occurred in CthΔskm+HFD mice. Omics analysis showed differential pathways enriched between CthΔskm mice and Cthf/f mice upon HFD. More severity in impaired energy metabolism, reduced AMPK signaling, and increased oxidative stress and ferroptosis occurred in CthΔskm+HFD mice compared to Cthf/f+HFD mice. Our results indicate that skeletal muscle CTH expression dysregulation contributes to metabolism disorders upon HFD.
Additional file 2: Table S2. of Characteristics and longitudinal progression of chronic obstructive pulmonary disease in GOLD B patients
Creators: name: Lawrence, Philip
name: Kolsum, Umme
name: Gupta, Vandana
name: Donaldson, Gavin
name: Singh, Richa
name: Barker, Bethan
name: George, Leena
name: Webb, Adam
name: Brookes, Anthony
name: Brightling, Christopher
name: Wedzicha, Jadwiga
name: Singh, Dave
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences

description: Comparison of baseline demographics, symptoms and lung function between patients categorised as GOLD B and D. (DOCX 17 kb)
Additional file 2: Table S2. of Characteristics and longitudinal progression of chronic obstructive pulmonary disease in GOLD B patients
Creators: name: Lawrence, Philip
name: Kolsum, Umme
name: Gupta, Vandana
name: Donaldson, Gavin
name: Singh, Richa
name: Barker, Bethan
name: George, Leena
name: Webb, Adam
name: Brookes, Anthony
name: Brightling, Christopher
name: Wedzicha, Jadwiga
name: Singh, Dave
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Comparison of baseline demographics, symptoms and lung function between patients categorised as GOLD B and D. (DOCX 17 kb)
Ophiopholis Muller & Troschel 1842
Creators: name: Stöhr, Sabine
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Ophiuroidea
Amphilepidida
Ophiopholidae
Ophiopholis

description: Genus Ophiopholis Müller & Troschel, 1842
Fig. 28
Type species
Asterias aculeata Linnaeus, 1767.
Examined species
Ophiopholis aculeata.
Oral GP
Flat, oval scale.
Adradial GP
Flat, blade-like for most of its length, distal end bulbous with several depressions and protrusions, curved dorsalwards. Proximal part tapered, ventral edge convex, dorsal edge straight. Distal condyle asymmetrically near arm meets condyle on RS, ridge at lateral abradial depression attaches to abGP. Large oval depression with finer stereom on dorsal side on proximal part of bulb.
Abradial GP
Kidney-shaped to half-circle, strong, half as long as adGP, distal end wider and thicker, with a groove that attaches to a ridge at adGP. Proximal end rounded tapered.
Oral shields
Oral shield inner surface with two weakly expressed spurs on midline. Madreporite inner surface proximally and in centre domed with large hole, opening in hydropore at proximal edge; lateral and distal margins flat and thinner.
Radial shield
Inner surface with large distal condyle, bordered by long, curved groove, proximal to condyle an oval patch of finer stereom.
description: Published as part of Stöhr, Sabine, 2024, Taxonomic analysis of the genital plates and associated structures in Ophiuroidea (Echinodermata), pp. 1-98 in European Journal of Taxonomy 933 on pages 59-60, DOI: 10.5852/ejt.2024.933.2525, http://zenodo.org/record/11198874
Additional file 1: Figure S1. of
                     Bacopa monnieri extract increases rat coronary flow and protects against myocardial ischemia/reperfusion injury
Creators: name: Sirintorn Srimachai
name: Devaux, Sylvie
name: Celine Demougeot
name: Sarawut Kumphune
name: Ullrich, Nina
name: Niggli, Ernst
name: Kornkanok Ingkaninan
name: Natakorn Kamkaew
name: C. Scholfield
name: Sompol Tapechum
name: Krongkarn Chootip
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences

description: Effect of L-Type Ca2+ Channel Blocker, Nifedipine, on ICa, L current. (DOCX 118 kb)
De Novo Occurrence of Hb Chile [β28(B10) Leu→Met] in a Korean Boy with Methemoglobinemia
Creators: name: Jung, Hyeon Jun
name: Kim, Boram
name: Kim, Hee-Jin
name: Lee, Mee Jeong
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: Hemoglobin (Hb) Chile, a variant of Hb M, is produced by a point mutation of CTG→ATG on codon 29 (legacy codon 28) of the Hb β locus gene, which results in an amino acid substitution of Leu→Met. It has been identified in two families worldwide and is inherited in an autosomal dominant manner. Here, we report a case of Hb Chile in which a de novo mutation was detected in the proband. A 17-year-old male presented to the outpatient clinic with a pale appearance. There was cyanosis on his lips and fingers. Blood tests indicated the existence of hemolysis, but complete blood counts revealed no anemia. Peripheral arterial oxygen saturation on pulse oximetry was 80% on room air and did not improve with oxygen supplementation. The level of methemoglobin was 15.4%. Targeted next-generation sequencing identified a heterozygous NM_000518.4(HBB):c.85C > A mutation, indicating Hb Chile. The Hb Chile mutation, on the other hand, was not discovered in his parents, implying that it arose as a result of a de novo mutation. This case highlights the necessity of suspecting Hb gene mutations in patients with unexplained chronic methemoglobinemia, even if there is no family history.
Additional file 2: of Clarithromycin attenuates IL-13â  induced periostin production in human lung fibroblasts
Creators: name: Komiya, Kosaku
name: Ohta, Shoichiro
name: Arima, Kazuhiko
name: Ogawa, Masahiro
name: Suzuki, Shoichi
name: Mitamura, Yasutaka
name: Nunomura, Satoshi
name: Nanri, Yasuhiro
name: Yoshihara, Tomohito
name: Kawaguchi, Atsushi
name: Jun-Ichi Kadota
name: Rubin, Bruce
name: Izuhara, Kenji
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Materials and Methods. (DOCX 21Â kb)
Ophiothrix Muller & Troschel 1840
Creators: name: Stöhr, Sabine
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Ophiuroidea
Amphilepidida
Ophiotrichidae
Ophiothrix

description: Genus Ophiothrix Müller & Troschel, 1840
Fig. 29
Type species
Asterias fragilis Abildgaard in O.F. Müller, 1789.
Examined species
Ophiothrix fragilis.
Oral GP
Oval scale-like, thin, as long as OS, some with notch in proximal part of ventral edge. Pair at acute angle, to either side of distal lobe on OS, half covered by OS. Visible through skin as v-shaped pair of ossicles, supporting proximal end of genital slits.
Adradial GP
Bar-like with bulbous distal end, curved with dorsal edge concave, ventral edge convex. Slanting away from arm, not completely vertical. Large, round, knob-like condyle at distal end bordered by deep groove meets similar condyle on underside of radial shield. Proximal to condyle several other protrusions and fine meshed stereom patches.
Abradial GP
Half-circle to kidney-shaped, dorsal edge concave in middle, straight in proximal half, dorso-distal end with concave articular groove, ventral edge strongly convex. Articulated with adradial GP by elongated depression. Almost dorsoventrally horizontal, only slightly downward slanting. Dorsal surface with radiating striations, ventral surface without.
Oral shields
Oral shield with distal lobe, to which at either side an oral GP attaches. Madreporite bulging in centre, with large central opening.
Radial shield
Large distal condyle, bordered by curved groove, proximal to condyle a kidney-shaped patch of smooth, finer meshed stereom.
Remarks
In Ophiothrix, the oral GP are more obvious than in most other here examined genera, strong and large plates, in contrast to the small, thin scales covering the soft ventral disc.
description: Published as part of Stöhr, Sabine, 2024, Taxonomic analysis of the genital plates and associated structures in Ophiuroidea (Echinodermata), pp. 1-98 in European Journal of Taxonomy 933 on pages 60-62, DOI: 10.5852/ejt.2024.933.2525, http://zenodo.org/record/11198874
δβ-Thalassemia and α-Triplication: Is Genetic Retesting Worthwhile in Case of Non-Coherent Phenotype?
Creators: name: Giubbilei, Cristina
name: D’Angelo, Simona
name: Fotzi, Ilaria
name: Mogni, Massimo
name: Guglielmelli, Paola
name: Vannucchi, Alessandro Maria
name: Carrai, Valentina
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Cancer
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Thalassemia is a heterogenous group of hemoglobinopathies; intermediate thalassemia’s phenotype can be very variegated due to different genetic matching. Before NGS-era, diagnosis often mismatched with phenotypes, hiding some genetic findings that nowadays could completely explain clinical presentation. In this report, we emphasize the importance of reevaluating genetic testing to achieve a correct diagnosis in case of phenotype mismatch thalassemia. Starting from a suspect of δ/β thalassemia heterozygosity, reevaluating revealed heterozygosity for α-gene triplication combined to δ and β heterozygosity, a new finding that completely suited patient’s clinical manifestation. This case provided the opportunity to underline that an extended study on total globin genes is essential for correct diagnosis of thalassemia, especially when clinical onset phenotypes are more divisive and questionable at a first clinical work-up.
Additional file 1: of A screening program to test and treat for Helicobacter pylori infection: Cost-utility analysis by age, sex and ethnicity
Creators: name: Teng, Andrea
name: Kvizhinadze, Giorgi
name: Nair, Nisha
name: McLeod, Melissa
name: Wilson, Nick
name: Blakely, Tony
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Supplemental Material: Further information on the methods and inputs. (DOCX 122 kb)
Prevalence and Molecular Characterization of β-Thalassemia in Kirkuk Province of Northern Iraq
Creators: name: Abbas, Raghad A.
name: Hassan, Riyad H.
name: Taghlubee, Israa M.
name: Mohammed, Safaa I.
name: Mohammed, Huda H.
name: Hasan, Hanan H.
name: Judi, Ashwaq T.
name: Ali, Luqman S.
name: Mohammed, Wisam J.
name: Shihab, Hiba M.
name: Hussein, Thamir A.
name: Al-Kareem, Nawras A.
name: Hassan, Meaad K.
name: Al-Allawi, Nasir
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: To determine the prevalence and molecular basis of β-thalassemia in the Northeastern Iraqi province of Kirkuk, a total of 3954 individuals attending the provincial premarital screening center were recruited. The prevalence of β-thalassemia minor among the screened individuals was found to be 3.0%, while those of Hemoglobin E, and δβ-thalassemia carrier states were 0.05%, and 0.03% respectively. Molecular characterization of the β-thalassemia mutations was achieved by multiplex PCR and reverse hybridization, followed by next generation sequencing for those left uncharacterized by the former technique. Among 19 β-thalassemia mutations identified, seven were the most frequent, namely: IVS-II-1 (G > A), codon 8/9 (+G), IVS-I-6 (T > C), IVS-I-110 (G > A), IVS-I-I (G > A), IVS-I-5 (G > C) and codon 44 (-C) accounting for 78.5% of the mutations. This study further illustrates the heterogeneity of the spectrum of β-thalassemia in different parts of Iraq, and provides an essential step to facilitate prenatal diagnosis in the setting of a future national thalassemia prevention program.
Erythridula stolata McAtee
Creators: name: Zahniser, James N.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Cicadellidae
Erythridula
Erythridula stolata

description: Erythridula stolata McAtee
Studied material: 9 ♂, 2 ♀, USA, Tennessee, Sevier Co., Great Smoky Mountain National Park, Twin Creeks, Malaise trap, 35°41'6" N 83°29'56" W, 5 XI–5 XII 2001, col. IC Stocks, (INHS).
Notes: Specimens we identified as E. stolata collected in GSMNP exhibit some differences from previously studied specimens of this species. Although the habitus and color pattern are typical, the shape of the aedeagus is slightly different. The basal processes of the aedeagus were very short or absent, and a pair of flat triangular distal processes was well developed. Based on comparison with specimens we interpret this newly observed variation as intraspecific but additional study, ideally including analysis of molecular data, is warranted.
description: Published as part of Zahniser, James N., 2017, A new species and a new form of leafhopper from the Great Smoky Mountains National Park (Hemiptera: Cicadellidae: Typhlocybinae), pp. 81-85 in Zootaxa 4329 (1) on page 83, DOI: 10.11646/zootaxa.4329.1.4, http://zenodo.org/record/1001093
Additional file 2: of Clarithromycin attenuates IL-13â  induced periostin production in human lung fibroblasts
Creators: name: Komiya, Kosaku
name: Ohta, Shoichiro
name: Arima, Kazuhiko
name: Ogawa, Masahiro
name: Suzuki, Shoichi
name: Mitamura, Yasutaka
name: Nunomura, Satoshi
name: Nanri, Yasuhiro
name: Yoshihara, Tomohito
name: Kawaguchi, Atsushi
name: Jun-Ichi Kadota
name: Rubin, Bruce
name: Izuhara, Kenji
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Materials and Methods. (DOCX 21Â kb)
Additional file 1: of A screening program to test and treat for Helicobacter pylori infection: Cost-utility analysis by age, sex and ethnicity
Creators: name: Teng, Andrea
name: Kvizhinadze, Giorgi
name: Nair, Nisha
name: McLeod, Melissa
name: Wilson, Nick
name: Blakely, Tony
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Supplemental Material: Further information on the methods and inputs. (DOCX 122 kb)
Additional file 1: of Biomarkers for the detection of renal fibrosis and prediction of renal outcomes: a systematic review
Creators: name: Mansour, Sherry
name: Puthumana, Jeremy
name: Coca, Steven
name: Gentry, Mark
name: Chirag Parikh
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Science Policy

description: Study quality scoring system for stage II. Out of the 25 standards for reporting diagnostic accuracy studies (STARD) criteria, we used the ten most relevant parameters to assess quality of studies listed in this review. Studies meeting each criterion are listed under comments on the far right of the table. (DOCX 14 kb)
O'ZBEKISTONDA MEHMONXONA XO'JALIGI FAOLIYATINI DAVLAT TOMONIDAN QO'LLAB-QUVVATLASH
Creators: name: Nazarov, Nazar
name: Ismanov, Ibrohim
Publisher: name: Zenodo
Year: 2024

description: Ushbu tezisda hozirgi kunda O‘zbekistonda mehmonxona xo’jaligi boshqaruvi samaradorligini oshirish, mehmonxona biznesini rivojlantirish va bu sohani rivojlantirish uchun yaratilayotgan shart-sharoitlar tahlil qilinib, xulosalar keltirilgan.
Additional file 3: Table S3. of Characteristics and longitudinal progression of chronic obstructive pulmonary disease in GOLD B patients
Creators: name: Lawrence, Philip
name: Kolsum, Umme
name: Gupta, Vandana
name: Donaldson, Gavin
name: Singh, Richa
name: Barker, Bethan
name: George, Leena
name: Webb, Adam
name: Brookes, Anthony
name: Brightling, Christopher
name: Wedzicha, Jadwiga
name: Singh, Dave
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Baseline characteristics of patients who declined to GOLD D, according to reason (FEV1 and Exacerbation). (DOCX 18 kb)
Histampica A. M. Clark 1970
Creators: name: Stöhr, Sabine
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Ophiuroidea
Amphilepidida
Ophiothamnidae
Histampica

description: Genus Histampica A.M. Clark, 1970
Fig. 30
Type species
Amphiactis umbonata Matsumoto, 1915.
Examined species
Histampica duplicata (Lyman, 1875).
Oral GP
Oval scales, widely separated under OS, not visible externally.
Adradial GP
Bar-like narrow, flat shaft, distal end with condylar process and lip-like extension adradialwards, both connecting to condyles on RS. Proximal to condylar process on abradial edge a lateral process with flat surface, at adradial edge a larger flat process articulating with abGP. Distal adradial end somewhat wrench-shaped.
Abradial GP
Thin, flat, blade-like, abradial edge convex, adradial edge straight, distal end pointed. Articular structure a weakly offset distal part of adradial edge.
Oral shields
No special structures. Madreporite domed in centre with large opening.
Radial shield
Inner side with two low distal condyles, proximal to them a patch of finer stereom, no groove or ledge.
description: Published as part of Stöhr, Sabine, 2024, Taxonomic analysis of the genital plates and associated structures in Ophiuroidea (Echinodermata), pp. 1-98 in European Journal of Taxonomy 933 on pages 62-63, DOI: 10.5852/ejt.2024.933.2525, http://zenodo.org/record/11198874
Additional file 3: Table S3. of Characteristics and longitudinal progression of chronic obstructive pulmonary disease in GOLD B patients
Creators: name: Lawrence, Philip
name: Kolsum, Umme
name: Gupta, Vandana
name: Donaldson, Gavin
name: Singh, Richa
name: Barker, Bethan
name: George, Leena
name: Webb, Adam
name: Brookes, Anthony
name: Brightling, Christopher
name: Wedzicha, Jadwiga
name: Singh, Dave
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences

description: Baseline characteristics of patients who declined to GOLD D, according to reason (FEV1 and Exacerbation). (DOCX 18 kb)
Additional file 2: of The Alice Springs Hospital Readmission Prevention Project (ASHRAPP): a randomised control trial
Creators: name: Diplock, Gabrielle
name: Ward, James
name: Stewart, Simon
name: Scuffham, Paul
name: Stewart, Penny
name: Reeve, Carole
name: Davidson, Lea
name: Maguire, Graeme
Publisher: name: Figshare
Year: 2017
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Cancer

description: Participant information form. Trial information form provided to patients during consenting process. (DOCX 250 kb)
Teratothrix leberi Goff 1981
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Teratothrix
Teratothrix leberi

description: Teratothrix leberi Goff, 1981d:
NEO
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 181, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
MOESM1 of PRC2 is required for extensive reorganization of H3K27me3 during epigenetic reprogramming in mouse fetal germ cells
Creators: name: Prokopuk, Lexie
name: Stringer, Jessica
name: Hogg, Kirsten
name: Elgass, Kirstin
name: Western, Patrick
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Cancer

description: Additional file 1. PRC2 is required for extensive reorganization of H3K27me3 during epigenetic reprogramming in mouse fetal germ cells.
Additional file 1: of The Alice Springs Hospital Readmission Prevention Project (ASHRAPP): a randomised control trial
Creators: name: Diplock, Gabrielle
name: Ward, James
name: Stewart, Simon
name: Scuffham, Paul
name: Stewart, Penny
name: Reeve, Carole
name: Davidson, Lea
name: Maguire, Graeme
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Cancer

description: Participant consent form. Trial consent form. (DOCX 267 kb)
Additional file 1: of Meaning and barriers to quality care service provision in Child and Adolescent Mental Health Services: Qualitative study of stakeholder perspectives
Creators: name: Svirydzenka, Nadzeya
name: Ronzoni, Pablo
name: Dogra, Nisha
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Cancer
subject: Science Policy

description: Interview guide â   Stakeholder interviews (all groups) â   Qualitative interview data. (DOCX 22 kb)
Additional file 6 of A new efficient approach to fit stochastic models on the basis of high-throughput experimental data using a model of IRF7 gene expression as case study
Creators: name: Aguilera, Luis U.
name: Zimmer, Christoph
name: Kummer, Ursula
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Genetics
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics

description: Fitting the model to different doses of IFN. Additional file with figure A7 and A8 that shows the fits of the model to flow cytometry data describing the stimulation of cells with 100U and 250U of IFN. (PDF 188 kb)
Additional file 1: of The KiVa antibullying program in primary schools in Chile, with and without the digital game component: study protocol for a randomized controlled trial
Creators: name: Gaete, Jorge
name: Valenzuela, Daniela
name: Rojas-Barahona, Cristian
name: Valenzuela, Eduardo
name: Araya, Ricardo
name: Salmivalli, Christina
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences

description: SPIRIT 2013 Checklist: recommended items to address in a clinical trial protocol and related documents. (DOC 122Â kb)