Additional file 5 of X chromosome variants are associated with male fertility traits in two bovine populations
Creators: name: Fortes, Marina R. S.
name: Laercio R. Porto-Neto
name: Satake, Nana
name: Nguyen, Loan T.
name: Freitas, Ana Claudia
name: Thaise P. Melo
name: Daiane Cristina Becker Scalez
name: Hayes, Ben
name: Raidan, Fernanda S. S.
name: Reverter, Antonio
name: Boe-Hansen, Gry B.
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: FOS: Biological sciences

description: Additional file 5: Figure S1. Genetic correlations for 25 bull-fertility phenotypes in Brahman (above diagonal) and Tropical Composites (below diagonal). Genetic correlations were estimated using genomics and pairwise analyses for all traits, within breed. Figure S2. Manhattan plot for the analyses in each of the two breeds: SNP associations for the percentage of normal sperm (PNS). This figure provides a visual for the results of the genome-wide association studies in each breed, for PNS. Figure S3. Manhattan plot for the analyses in each of the two breeds: SNP associations for the percentage of sperm with head abnormalities (HA). This figure provides a visual for the results of the genome-wide association studies in each breed, for HA. Figure S4. Manhattan plot for the analyses in each of the two breeds: SNP associations for the percentage of sperm with mid-piece abnormalities (MA). This figure provides a visual for the results of the genome-wide association studies in each breed, for MA. Figure S5. Manhattan plot for the analyses in each of the two breeds: SNP associations for inhibin hormone levels (INH). This figure provides a visual for the results of the genome-wide association studies in each breed, for INH. Figure S6. Manhattan plot for the analyses in each of the two breeds: SNP associations for the DNA fragmentation index (DFI3). This figure provides a visual for the results of the genome-wide association studies in each breed, for DFI3. Figure S7. Manhattan plot for the analyses in each of the two breeds: SNP associations for the DNA fragmentation index measured with an alternative cytometry method (DFI4, see Methods for phenotype details). This figure provides a visual for the results of the genome-wide association studies in each breed, for DFI4. Figure S8. Manhattan plot for the analyses in each of the two breeds: SNP associations for the percentage of sperm with proximal droplets (PD). This figure provides a visual for the results of the genome-wide association studies in each breed, for PD. Figure S9. Manhattan plot for the analyses in each of the two breeds: SNP associations for the percentage of sperm with total droplets (TD), which seem specific to Tropical Composites. This figure provides a visual for the results of the genome-wide association studies in each breed, for TD. Figure S10. Manhattan plot for the analyses in each of the two breeds: SNP associations for scrotal circumference measured at about 24 months of age (SC24). This figure provides a visual for the results of the genome-wide association studies in each breed, for SC24. Figure S11. Manhattan plot for the additive (top) model and the recessive (bottom) model: SNP associations on chromosome 11 for DNA fragmentation index (DFI3) in Brahman. This figure provides a visual for the results in chromosome 11 of the SNP associations in Brahman for DFI3 using alternative models to compare the additive model with a recessive model.