cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Respondent Mental Wellbeing and Survey Interview Outcomes
Creators: name: Perales Perez, Francisco
name: Baffour, Bernard
Publisher: name: European Survey Research Association
Year: 2018
Subjects: paradata; interviewer observations; panel attrition; missing data; multilevel models; survey methods

description: Poor mental health and mental disorders are amongst the largest causes of disease burden across the globe, and in developed countries mental illness is on the rise. Studies of the predictors and consequences of ill mental health often rely on surveys. However, there is very little evidence of whether or not there are differences in the ways in which individuals with good and poor mental health engage with the survey interview process, and on their subsequent survey interview outcomes. We examine the associations between respondent mental wellbeing and survey interview outcomes using 14 years (2001-2014) of annual, nationally-representative, Australian panel data (n∼200,000) and state-of-the-art multilevel regression models. We find that individuals with poorer mental health and mental disorders are generally more likely than individuals with better mental health to be deemed by interviewers as being suspicious of the study, experiencing issues understanding survey questions, and being uncooperative. We also find that these individuals are comparatively more likely to experience panel attrition, complete interviews featuring higher item-level missing data, and fail to complete/return self-complete questionnaires. While the magnitude of these effects is moderate, our findings suggest that data collectors, researchers and policymakers need to remain cognizant of potential issues emerging from differences in the ways in which individuals with poorer and better mental wellbeing engage in social surveys
description: Survey Research Methods, Vol 12, No 2 (2018)
sj-docx-1-qjp-10.1177_17470218231165251 – Supplemental material for Linearly integrating speed and accuracy to measure individual differences in theory of mind: Evidence from autistic and neurotypical adults
Creators: name: Livingston, Lucy Anne
name: Shah, Punit
name: Happé, Francesca
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental material, sj-docx-1-qjp-10.1177_17470218231165251 for Linearly integrating speed and accuracy to measure individual differences in theory of mind: Evidence from autistic and neurotypical adults by Lucy Anne Livingston, Punit Shah and Francesca Happé in Quarterly Journal of Experimental Psychology
Siphonaria crebricostata Jay 1839
Creators: name: Jenkins, Bruce
name: Köhler, Frank
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Siphonariida
Siphonariidae
Siphonaria
Siphonaria crebricostata

description: Siphonaria crebricostata Jay, 1839
Introduced by Jay (1839: 39) as a nomen nudum and attributed to Nuttall without description this is an unavailable name (Art. 12.1 of the Code; see also White & Dayrat, 2012: 62). It was listed as a synonym and therefore not made available subsequently by Catlow & Reeve (1845: 100), Jay (1850: 104), Reeve (1856: pl. 2, species 9), Paetel (1873: 117, 1875: 92, 1883: 178, 1889: 428), Pilsbry (1920b: 379), Schrenck (1867: 306), Hutton (1880: 36), and Hubendick (1946: 47). Galindo (1977: 416) misspelled the name as ‘ crebicostata ’. Siphonaria crebidentata Smith in Galindo (1977: 416) is a separate emendation referring to this nomen nudum. Because S. crebricosta is not an available name, the lectotype designation by Baker (1964: 159) is also invalid (Art. 74.2 and 5 of the Code).
description: Published as part of Jenkins, Bruce & Köhler, Frank, 2024, Hidden in plain sight: Systematic review of Indo-West Pacific Siphonariidae uncovers extensive cryptic diversity based on comparative morphology and mitochondrial phylogenetics (Mollusca, Gastropoda), pp. 1-217 in Megataxa 13 (1) on page 202, DOI: 10.11646/megataxa.13.1.1, http://zenodo.org/record/14984186
Fem Media Matters: An Inqueery Into Campus Sexual Assault
Creators: name: Garber, Andrew Kennedy
Publisher: name: Old Dominion University Libraries
Year: 2018

description: Queer victimization as a topic is often marginalized within research due to hegemonic ideologies within society. When it comes to campus sexual assault research and resources, the focus is primarily on female victimization constructed within a heteronormative framework. Little research and theorization has been done on male victimization or the specificities of LGBTQ victimization of campus sexual assault. The problem this research has identified is that the female-victim-male-perpetrator metanarrative of campus sexual assault portrayed through media exemplifies the heterosexist culture at various levels of analysis within the United States. Further, it has led to an invisibility of LGBT and male victimization while simultaneously contributing to the oppression of women and sexual minorities. The purpose of this research is to identify specific gaps within campus culture and infrastructure through analyzing forms of media that have aided in leaving queer male victims of sexual assault marginalized within college campuses. The objective is to demonstrate the extent to which the heteronormative campus culture can theoretically marginalize non-conforming members, namely sexual minorities. By critically examining these specific media, the focus of the research will theorize as to why these gaps exist and where institutions of higher learning need to go in order to address the unmet needs of these marginalized sexual assault victims.
sj-docx-1-hss-10.1177_15563316231167148 – Supplemental material for Rehabilitation of Pregnancy and Lactation–Associated Osteoporosis and Vertebral Fractures: A Case Report
Creators: name: Sahni, Payal
name: Edeer, Ayse Ozcan
name: Lindsay, Robert
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: 110323 Surgery
subject: FOS: Clinical medicine

description: Supplemental material, sj-docx-1-hss-10.1177_15563316231167148 for Rehabilitation of Pregnancy and Lactation–Associated Osteoporosis and Vertebral Fractures: A Case Report by Payal Sahni, Ayse Ozcan Edeer and Robert Lindsay in HSS Journal®
sj-pdf-1-ctj-10.1177_17407745231174544 – Supplemental material for Overview of modern approaches for identifying and evaluating heterogeneous treatment effects from clinical data
Creators: name: Lipkovich, Ilya
name: Svensson, David
name: Ratitch, Bohdana
name: Dmitrienko, Alex
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: FOS: Clinical medicine
subject: 160807 Sociological Methodology and Research Methods
subject: FOS: Sociology

description: Supplemental material, sj-pdf-1-ctj-10.1177_17407745231174544 for Overview of modern approaches for identifying and evaluating heterogeneous treatment effects from clinical data by Ilya Lipkovich, David Svensson, Bohdana Ratitch and Alex Dmitrienko in Clinical Trials
Современному землепользованию необходимы новая парадигма и новая фундаментальная  теоретическая база
Creators: name: Харченко Ю.А.
Publisher: name: «АГРУС»
Year: 2018

description: В статье обосновывается необходимость уточнения основных  выводов теории происхождения почвы по В.В. Докучаеву и разработки современной теории землепользования.
Ключевые слова: почва, почвенный покров,  технологии возделывания, системы земледелия, новая парадигма землепользования.
Additional file 1 of Automatic 3D cell segmentation of fruit parenchyma tissue from X-ray micro CT images using deep learning
Creators: name: Van Doorselaer, Leen
name: Verboven, Pieter
name: Nicolai, Bart
Publisher: name: figshare
Year: 2024
Subjects: subject: Artificial Intelligence and Image Processing
subject: FOS: Computer and information sciences

description: Additional file 1: Morphometric properties of individual cells and pores.
title: Evaluation der Studiensysteme zur Professionalisierung von Lehrern für das Lehramt an Sonderschulen in Österreich und Deutschland am Beispiel „Katholische Pädagogische Hochschule Wien“ und „Pädagogische Hochschule in Baden-Württemberg"
Creators: name: Becher, Petra
Year: 2008

description: Diese Diplomarbeit untersucht und evaluiert die österreichischen und deutschen Studiensysteme zur Professionalisierung von Sonderschullehrern am Beispiel Katholische Pädagogische Hochschule Wien und Pädagogische Hochschulen in Baden-Württemberg. Zentrale, dreigliedrige Fragestellung ist, (1) ob die Anforderungen, die einen Sonderschullehrer in Österreich in seinem Berufsfeld erwarten, jenen an einen Sonderschullehrer in Deutschland entsprechen, sowie (2) ob die Anforderungen im Rahmen angebotener Lehrveranstaltungen an den ausgewählten Pädagogischen Hochschulen berücksichtigt werden und (3) ob die in der Professionalisierungsdebatte geforderten Komponenten im Rahmen der Ausbildung miteinbezogen werden. Diese Fragestellung wird anhand einer eingehenden Literaturanalyse, die vor allem auch die Entwicklungen in der Professionalisierungsdebatte inkludiert, und mit einer darauf folgenden Dokumentenanalyse nach Ländern getrennt beantwortet. Im Anschluss daran wird eine Zusammenführung vorgenommen. Die gewonnenen Erkenntnisse sollen auf eventuell noch zu tätigende Angleichungsschritte, die auf den Maximen der europäischen Dimension basieren, hinweisen.
description: This Master’s Thesis investigates and evaluates the Austrian and the German study systems with respect to the professionalization of special needs teachers, by example of the Katholische Pädagogische Hochschule in Vienna and the Pädagogische Hochschulen in Baden-Württemberg. The main three issues which are addressed are the following: 1) Whether the requirements, which special needs teachers in Austria meet in their professional environment, correspond to those of their counterparts in Germany, 2) whether these requirements are reflected in the curricula of the investigated Universities and 3) whether those topics, which are called for in the professionalization debate, are included in the training programme. The issues are treated in a comprehensive literature survey of developments in the professionalization debate, in an investigation and analysis of relevant documents in both countries, followed by a consolidation. The findings reflect on possible measures to align the curricula in accordance with European harmonization.
Эффективность минеральных удобрений на озимой пшенице при освоении технологии без обработки почвы в условиях Центрального Предкавказья
Creators: name: Шаповалова Н.Н., Годунова Е.И.
Publisher: name: «АГРУС»
Year: 2018

description: В работе представлены результаты двухлетних исследований по  влиянию разных видов, доз и способов внесения минеральных удобрений на урожайность озимой пшеницы при прямом посеве с нулевой обработкой почвы на черноземе обыкновенном. В новой технологии, так же как и в общепринятой с использованием плуга, важная роль в увеличении сбора зерна и повышении эффективности удобрений принадлежит предшественнику. Озимая пшеница показала высокую отзывчивость на рядковое применение всех видов фосфорсодержащих удобрений и устранение дефицита азота в период сева. Проведена оценка эффективности удобрений по двум наиболее важным критериям – приросту урожайности и окупаемости единицы действующего вещества зерном.
Ключевые слова: минеральные удобрения, озимая пшеница, прямой посев, нулевая обработка почвы, прирост урожайности, окупаемость удобрений.
Additional file 6 of Automatic 3D cell segmentation of fruit parenchyma tissue from X-ray micro CT images using deep learning
Creators: name: Van Doorselaer, Leen
name: Verboven, Pieter
name: Nicolai, Bart
Publisher: name: figshare
Year: 2024
Subjects: subject: Artificial Intelligence and Image Processing
subject: FOS: Computer and information sciences

description: Additional file 6: Description of the 3D morphometric parameter.
Supplemental Material, sj-docx-1-ptd-10.1177_08968608231210130 - The impact of cat-related peritonitis on peritoneal dialysis outcomes: Results from the RDPLF
Creators: name: Bellanger, Quentin
name: Lanot, Antoine
name: Lobbedez, Thierry
name: Bechade, Clémence
name: Boyer, Annabel
Publisher: name: SAGE Journals
Year: 2023
Subjects: Medicine

description: Supplemental Material, sj-docx-1-ptd-10.1177_08968608231210130 for The impact of cat-related peritonitis on peritoneal dialysis outcomes: Results from the RDPLF by Quentin Bellanger, Antoine Lanot, Thierry Lobbedez, Clémence Bechade and Annabel Boyer in Peritoneal Dialysis International
Siphonaria sowerbyi H. Adams & A. Adams 1855
Creators: name: Jenkins, Bruce
name: Köhler, Frank
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Siphonariida
Siphonariidae
Siphonaria
Siphonaria sowerbyi

description: Siphonaria sowerbyi H. Adams & A. Adams, 1855
Introduced by H. Adams & A. Adams (1855 [in 1853– 1858]: 271) as a replacement name for S. radiata Sowerby I, 1835, this name is permanently invalid as it is an objective junior homonym of S. sowerbyi Michelin, 1832 (Art. 52.2 of the Code).
description: Published as part of Jenkins, Bruce & Köhler, Frank, 2024, Hidden in plain sight: Systematic review of Indo-West Pacific Siphonariidae uncovers extensive cryptic diversity based on comparative morphology and mitochondrial phylogenetics (Mollusca, Gastropoda), pp. 1-217 in Megataxa 13 (1) on page 203, DOI: 10.11646/megataxa.13.1.1, http://zenodo.org/record/14984186
title: Die Bedeutung von Partizipation in demokratischen Schulen
Creators: name: Turin, Barbara
Year: 2008

description: Am von Lawrence Kohlberg entwickelten Schulmodell der „Just Community“ School, wird dargelegt, wie eine demokratisch ausgerichtete Schule in die Praxis umgesetzt werden kann und welche Kriterien eine solche Schule auszeichnet. Zuerst wird in dieser Arbeit Kohlbergs Theoriemodell der moralischen Stufen vorgestellt. Diese Einteilung der Entwicklung des moralischen Urteils wird mittels der Dilemmamethode eruiert. In dieser Methode sieht Kohlberg eine Chance, moralische Entwicklung als Ziel der Erziehung umzusetzen. Im Just Community Ansatz, der gerechten Schulgemeinschaft, ist Gerechtigkeit oberstes Prinzip. Diese Umsetzung braucht eine demokratisch geführte Schule, in der moralische Prinzipien gelernt und angewandt werden können. Ziel ist es, SchülerInnen in ihrer Entwicklung zu sozialen und mündigen Wesen zu unterstützen: Selbst- und Mitbestimmung, also Partizipation, Autonomie und Verantwortlichkeit, fördern. Die intensive pädagogische Auseinandersetzung mit dem Modell führt zur Weiterentwicklung, wie zum Beispiel durch Fritz Oser und Georg Lind. Die Umsetzung dieser Fähigkeiten erfordert gut geschulte und reflexionsfähige LehrerInnen; mit der Dilemma- Methode erhalten sie ein Instrument zur Gestaltung eines demokratischen, partizipativen Unterrichts.
description: The UN Convention on the Rights of the Child (CRC) and also the Austrian 'Schulunterrichtsgesetz' (SchUG) - a law concerning instruction in schools - establishes possibilities of participation and participative elements for children and adolescents. How can this be implemented in school, how must the school system be structured and organized to cope with this demand? How can pupils participate? Within a democratic system, schools should also be organized in a democratic way to enable pupils to learn democratic behaviour. Lawrence Kohlberg's school model 'Just Community' shows how to realize a democratic school system and which criteria characterize such schools. This paper first presents Kohlberg's model of moral steps. Step by step it will show the development of moral opinions according to the dilemma method. Kohlberg sees the moral development as the purpose of all education. Moral judgement leads to moral acts. For the 'Just Community' principles, justness is the main principle. To implement this, a democratic administrated school is needed, where moral principles are teached and applied. The target is to support pupils in their development as social beings, to back up their growth to selfdetermination and participation. Kohlberg's model is tested in real life and scientifically proven. Many other pedagogues like Fritz Oser and Georg Lind have enhanced this model.
Additional file 2 of Automatic 3D cell segmentation of fruit parenchyma tissue from X-ray micro CT images using deep learning
Creators: name: Van Doorselaer, Leen
name: Verboven, Pieter
name: Nicolai, Bart
Publisher: name: figshare
Year: 2024
Subjects: subject: Artificial Intelligence and Image Processing
subject: FOS: Computer and information sciences

description: Additional file 2: Benchmark.
Calibrating chemical mixing induced by internal gravity waves based on hydrodynamical simulations; The chemical evolution of OB-type stars
Creators: name: Mombarg, J. S. G.
name: Varghese, A.
name: Ratnasingam, R. P.
Publisher: name: arXiv
Year: 2025
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Internal gravity waves (IGWs) have been shown to contribute to the transport of chemical elements in stars with a convective core and radiative envelope. Recent 2D hydrodynamical simulations of convection in intermediate-mass stars have provided estimates of the chemical mixing efficiency of such waves. The chemical diffusion coefficient from IGW mixing is described by a constant A times the squared wave velocity. The value of A, however, remains unconstrained by such simulations. This work aims at investigating what values A can take in order to reproduce the observed nitrogen surface abundances of the most nitrogen-enriched massive stars. Furthermore, we discuss the prevalence of IGW mixing compared to rotational mixing. We provide an implementation of these mixing profiles predicted from hydrodynamical simulations in the one-dimensional stellar evolution code MESA. We compute evolution tracks for stars between 3 and 30Msun with this new implementation for IGW mixing and study the evolution for the surface abundances of isotopes involved in the CNO cycle, particularly the N14 isotope. We show that this 1D framework predicting the chemical diffusion coefficient from IGW mixing yields consistent morphologies of the mixing profile in comparison with hydrodynamical simulations. We find that the value of A must increase with mass in order to reproduce the most nitrogen-enriched stars. Assuming these calibrated values for A, mixing by IGWs is a potential mechanism to reproduce well-mixed stars without needing rapid rotation. We have provided observational limits on the efficiency of IGW mixing for future theoretical studies. Future asteroseismic modelling efforts taking IGW mixing into account will be able to place additional constraints on the convective core mass, as our models predict that the convective core should be significantly more massive if IGW mixing is indeed efficient.
description: Accepted for publication in Astronomy & Astrophysics. 12 pages. Full abstract in PDF
Siphonaria laciniata Paetel 1873
Creators: name: Jenkins, Bruce
name: Köhler, Frank
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Siphonariida
Siphonariidae
Siphonaria
Siphonaria laciniata

description: Siphonaria laciniata Paetel, 1873
Introduced by Paetel (1873: 117) as a nomen nudum without description and attributed to Dunker this is an unavailable name (Art. 12.1 of the Code). Not made available subsequently by Paetel (1883: 178, 1889: 428). It remains an unavailable name. Hubendick (1946: 68) suggested it may be a misspelling of S. laciniosa.
description: Published as part of Jenkins, Bruce & Köhler, Frank, 2024, Hidden in plain sight: Systematic review of Indo-West Pacific Siphonariidae uncovers extensive cryptic diversity based on comparative morphology and mitochondrial phylogenetics (Mollusca, Gastropoda), pp. 1-217 in Megataxa 13 (1) on page 203, DOI: 10.11646/megataxa.13.1.1, http://zenodo.org/record/14984186
DIGITAL TRANSFORMATION IN GOVERNMENT: CHATBOT FOR COMMUNICATING TAX EXEMPTION AMONG SELECTED USERS IN THE PHILIPPINES
Creators: name: Cruz, Jennifer D.L.
Publisher: name: Zenodo
Year: 2024
Subjects: e-government
online governance
tax exemptions
TESA chatbot
diplomatic community
Department of Foreign Affairs-Philippines

description: This is an exploratory descriptive study on the use of the Department of Finance's (DOF) TESA Chatbot to communicate tax exemption to selected diplomatic community members and international organisations using the DOF's Enhanced Tax Exemption System-Lite (TESlite). The TESA Chatbot aims to streamline the tax exemption process and contribute to DOF's digital transformation plan. Guided by the principles of Cybernetics theory, data were collected through key informant interviews with two industry experts and focus group discussions with seven TESA chatbot users. Before the deployment of the chatbot, communication difficulties included long waiting times, strict office hours, and health concerns during the pandemic. Through the chatbot, the users enjoyed the convenience of 24/7 availability, instant responses, and getting answers to their basic inquiries. However, challenges persist, such as the chatbot􀂶s limitations in handling complex queries and providing outdated information. Hence, the participants cited these opportunities for improvement: continuous updating of the system, incorporation of various languages, and expanding the chatbot􀂶s scope. Overall, the pilot TESA Chabot can be a supplement but not a replacement for human interaction and communication in applying for tax exemption online. The chatbot can be the first step for basic inquiries, but human intervention is still deemed highly important and preferred by applicants for special cases or complex queries. Suggestions to improve the pilot implementation are given.
Developments in Low Level Light Therapy (LLLT) for dentistry
Creators: name: Hamdy, Tamer
Publisher: name: F1000Research
Year: 2017

description: Low level light/laser therapy (LLLT) is recent therapeutic treatment by direct application of light to stimulate cell responses in order to enhance tissue healing, decrease inflammation and promote analgesia. They offer great chance for treatment of many dental disease and situation promoting easily and effective healing with pain reduction.
sj-docx-1-try-10.1177_11786469231211184 – Supplemental material for Normative Data on Serum and Plasma Tryptophan and Kynurenine Concentrations from 8089 Individuals Across 120 Studies: A Systematic Review and Meta-Analysis
Creators: name: Metri, Najwa-Joelle
name: Butt, Ali S
name: Murali, Ava
name: Steiner-Lim, Genevieve Z
name: Lim, Chai K
Publisher: name: SAGE Journals
Year: 2023
Subjects: Biochemistry

description: Supplemental material, sj-docx-1-try-10.1177_11786469231211184 for Normative Data on Serum and Plasma Tryptophan and Kynurenine Concentrations from 8089 Individuals Across 120 Studies: A Systematic Review and Meta-Analysis by Najwa-Joelle Metri, Ali S Butt, Ava Murali, Genevieve Z Steiner-Lim and Chai K Lim in International Journal of Tryptophan Research
Assessment of Potential Impacts to Subsurface Bodies of Water Due to Underground Coal Mining
Creators: name: Bode-Jimenez, Gabriel
Publisher: name: University of Kentucky Libraries
Year: 2017
Subjects: subject: Mining Engineering

description: Underground coal mining operations induce ground movements, which may impact overlying hydrogeologic systems. Potential impacts mainly include changes in the hydraulic conductivity of overlying strata, decreasing of the hydraulic head and changes in water flow. The present research quantifies potential hydrogeologic impacts caused by underground mining through modeling of pre- and post-mining hydrogeologic systems.

Three-dimensional conceptual hydrogeologic models were constructed with the Processing Modflow for Windows software package (PMWiN). The models are based on an actual case study, but were simplified in terms of geometry and material properties. Water flow was simulated under changing hydrogeologic properties. A number of scenarios were investigated including models with horizontal or inclined topography, featuring an aquifer overlying two longwall panels. The hydrogeologic properties of the models were estimated based on empirical relationships between the post-mining hydraulic conductivity and strain in the overburden. The strain regime in the overburden was estimated using the Surface Deformation Prediction System (SDPS) package, which allows calculation of surface deformations due to underground coal mining.

The research focuses on changes in hydraulic heads; results indicate that hydraulic heads may decrease over undermined areas and may rebound as mining ceases. Water infiltration may occur from higher located overburden formations to lower formations due to mining induced changes in hydrogeologic properties.
Additional file 3 of Automatic 3D cell segmentation of fruit parenchyma tissue from X-ray micro CT images using deep learning
Creators: name: Van Doorselaer, Leen
name: Verboven, Pieter
name: Nicolai, Bart
Publisher: name: figshare
Year: 2024
Subjects: subject: Artificial Intelligence and Image Processing
subject: FOS: Computer and information sciences

description: Additional file 3: Image registration.
Siphonaria godeffroyi Paetel 1873
Creators: name: Jenkins, Bruce
name: Köhler, Frank
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Siphonariida
Siphonariidae
Siphonaria
Siphonaria godeffroyi

description: Siphonaria godeffroyi Paetel, 1873
Introduced by Paetel (1873: 117) as a nomen nudum without description and incorrectly attributed to Crosse this is an unavailable name (Art. 12.1 of the Code). It has not been made available subsequently by Paetel (1883: 178, 1889: 428).
description: Published as part of Jenkins, Bruce & Köhler, Frank, 2024, Hidden in plain sight: Systematic review of Indo-West Pacific Siphonariidae uncovers extensive cryptic diversity based on comparative morphology and mitochondrial phylogenetics (Mollusca, Gastropoda), pp. 1-217 in Megataxa 13 (1) on page 203, DOI: 10.11646/megataxa.13.1.1, http://zenodo.org/record/14984186
Additional file 4 of Automatic 3D cell segmentation of fruit parenchyma tissue from X-ray micro CT images using deep learning
Creators: name: Van Doorselaer, Leen
name: Verboven, Pieter
name: Nicolai, Bart
Publisher: name: figshare
Year: 2024
Subjects: subject: Artificial Intelligence and Image Processing
subject: FOS: Computer and information sciences

description: Additional file 4: Cell matrix and pore labeling.
Evaluation of EAS directions based on TAIGA HiSCORE data using fully connected neural networks
Creators: name: Kryukov, A. P.
name: Polyakov, S. P.
name: Dubenskaya, Yu. Yu.
name: Gres, E. O.
name: Postnikov, E. B.
name: Volchugov, P. A.
name: Zhurov, D. P.
Publisher: name: arXiv
Year: 2025
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Machine Learning (cs.LG)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: The direction of extensive air showers can be used to determine the source of gamma quanta and plays an important role in estimating the energy of the primary particle. The data from an array of non-imaging Cherenkov detector stations HiSCORE in the TAIGA experiment registering the number of photoelectrons and detection time can be used to estimate the shower direction with high accuracy. In this work, we use artificial neural networks trained on Monte Carlo-simulated TAIGA HiSCORE data for gamma quanta to obtain shower direction estimates. The neural networks are multilayer perceptrons with skip connections using partial data from several HiSCORE stations as inputs; composite estimates are derived from multiple individual estimates by the neural networks. We apply a two-stage algorithm in which the direction estimates obtained in the first stage are used to transform the input data and refine the estimates. The mean error of the final estimates is less than 0.25 degrees. The approach will be used for multimodal analysis of the data from several types of detectors used in the TAIGA experiment.
description: The work was reported on the 8th International Conference on Deep Learning in Computational Physics (DLCP2025), June 19-21, 2024, Moscow, Russia (https://dlcp2024.sinp.msu.ru/). To bee published in Moscow University Physics Bulletin
Siphonaria punctulata Paetel 1889
Creators: name: Jenkins, Bruce
name: Köhler, Frank
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Siphonariida
Siphonariidae
Siphonaria
Siphonaria punctulata

description: Siphonaria punctulata Paetel, 1889
Introduced by Paetel (1889: 429) as a nomen nudum without description and incorrectly attributed to ‘Quoy’ (= Quoy and Gaimard, 1833), this is likely an incorrect subsequent spelling of S. punctata. However, Paetel (1889: 429) separately listed S. punctata.
description: Published as part of Jenkins, Bruce & Köhler, Frank, 2024, Hidden in plain sight: Systematic review of Indo-West Pacific Siphonariidae uncovers extensive cryptic diversity based on comparative morphology and mitochondrial phylogenetics (Mollusca, Gastropoda), pp. 1-217 in Megataxa 13 (1) on page 203, DOI: 10.11646/megataxa.13.1.1, http://zenodo.org/record/14984186
Additional file 5 of Automatic 3D cell segmentation of fruit parenchyma tissue from X-ray micro CT images using deep learning
Creators: name: Van Doorselaer, Leen
name: Verboven, Pieter
name: Nicolai, Bart
Publisher: name: figshare
Year: 2024
Subjects: subject: Artificial Intelligence and Image Processing
subject: FOS: Computer and information sciences

description: Additional file 5: Semi-automated cell segmentation workflow.
Degeneration and regeneration of peripheral nerves: role of thrombin and its receptor PAR-1
Creators: name: Fabrizi, Cinzia
name: Pompili, Elena
name: Ciraci, Viviana
name: Leone, Stefano
name: Artico, Marco
name: Maras, Bruno
name: Schininà, Maria Eugenia
name: Fumagalli, Lorenzo
Publisher: name: Firenze University Press
Year: 2017
Subjects: Schwann cells; peripheral nervous system; regeneration; thrombin; protesase-activated receptors

description: The peripheral nervous system has a striking regeneration potential and after damage extensive changes in the differentiation state both of the injured neurons and of the Schwann cells are observed. Schwann cells, in particular, undergo a large scale change in gene expression becoming able to support axonal regeneration. Nerve injury is generally associated to inflammation and activation of the coagulation cascade. Thrombin acts as a polyfunctional signalling molecule exerting its physiological function through soluble target proteins and G-protein-coupled receptors, the protease-activated receptors (PARs) [1]. Recently, we have demonstrated that the activation of the main thrombin receptor, PAR-1, in Schwann cells favours their regenerative potential determining the release of factors which promote axonal regrowth [2]. The pro-regenerative potential of thrombin seems to be exerted in a narrow range of concentrations (pM-nM range). In fact, our preliminary data indicate that high levels of thrombin in the micromolar range slow down Schwann cell proliferation and induce cell death. On the contrary, PAR-1 activating peptides mimic the pro-survival but not the pro-apoptotic effects of thrombin. Controlling thrombin concentration may preserve neuronal health during nerve injury and represent a novel target for pharmacologic therapies.
description: Italian Journal of Anatomy and Embryology, Vol. 122, No. 1 (Supplement) 2017
Siphonaria alternata var. intermedia Davis 1904
Creators: name: Jenkins, Bruce
name: Köhler, Frank
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Siphonariida
Siphonariidae
Siphonaria
Siphonaria alternata
Siphonaria alternata var. intermedia davis, 1904

description: Siphonaria alternata var. intermedia Davis, 1904
Introduced by Davis (1904: 127) as a variety of S. alternata (Say, 1827), the name is an objective junior homonym of S. sipho intermedia Schrenck, 1867 and permanently invalid (Art. 57.2 of the Code).
description: Published as part of Jenkins, Bruce & Köhler, Frank, 2024, Hidden in plain sight: Systematic review of Indo-West Pacific Siphonariidae uncovers extensive cryptic diversity based on comparative morphology and mitochondrial phylogenetics (Mollusca, Gastropoda), pp. 1-217 in Megataxa 13 (1) on page 203, DOI: 10.11646/megataxa.13.1.1, http://zenodo.org/record/14984186
Role of the Pretraining and the Adaptation data sizes for low-resource real-time MRI video segmentation
Creators: name: Tholan, Masoud Thajudeen
name: Hegde, Vinayaka
name: Sharma, Chetan
name: Ghosh, Prasanta Kumar
Publisher: name: arXiv
Year: 2025
Subjects: subject: Audio and Speech Processing (eess.AS)
subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Signal Processing (eess.SP)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Computer and information sciences

description: Real-time Magnetic Resonance Imaging (rtMRI) is frequently used in speech production studies as it provides a complete view of the vocal tract during articulation. This study investigates the effectiveness of rtMRI in analyzing vocal tract movements by employing the SegNet and UNet models for Air-Tissue Boundary (ATB)segmentation tasks. We conducted pretraining of a few base models using increasing numbers of subjects and videos, to assess performance on two datasets. First, consisting of unseen subjects with unseen videos from the same data source, achieving 0.33% and 0.91% (Pixel-wise Classification Accuracy (PCA) and Dice Coefficient respectively) better than its matched condition. Second, comprising unseen videos from a new data source, where we obtained an accuracy of 99.63% and 98.09% (PCA and Dice Coefficient respectively) of its matched condition performance. Here, matched condition performance refers to the performance of a model trained only on the test subjects which was set as a benchmark for the other models. Our findings highlight the significance of fine-tuning and adapting models with limited data. Notably, we demonstrated that effective model adaptation can be achieved with as few as 15 rtMRI frames from any new dataset.
description: Accepted to ICASSP 2025
Morphological and immunoistochemical evaluation of cadaveric gingival specimens to estimate the post-mortem Interval
Creators: name: Falconi, Mirella
name: Fais, Paolo
name: Manzoli, Lucia
name: Teti, Gabriella
name: Mazzotti, Maria Carla
name: Pelotti, Susi
Publisher: name: Firenze University Press
Year: 2017
Subjects: Post-mortem interval; hypoxia; HIF1alpha; ultrastructural morphological changes; gingiva

description: The estimation of the post-mortem interval (PMI) is a critical step in forensic medicine and remains one of the most challenging variables to determine. In general, the numerous methods currently used in estimating post-mortem interval yield to large post-mortem windows, are influenced by several factors and sometime contradict each other.  With the aim to obtain a much more accurate determination of the post-mortem interval we combined morphological ultrastructural and immunoistochemical analyses to reach a more detailed knowledge on tissue organization and degradation after death. Samples of gingival tissues obtained from 20 cadavers at different post-mortem intervals were processed for transmission electron microscopy to evaluate ultrastructural modifications in the epithelium and connective tissue. Gingival cells and the extracellular matrix of gingival tissues have been observed by a transmission electron microscopy (TEM) in combination with the evaluation of potential post-mortem biochemical markers, with the final goal to find a tight correlation between the ultrastructural modifications, the biomarker expression and the time of death. All the samples were also immunostained with anti-hypoxia-induced factor 1-α (HIF1-α) antibody, a transcription factor expressed in response to hypoxia, in order to evaluate the expression of HIF1-α, and to establish a correlation between the protein presence and the time of death. Results showed nuclear chromatin changes and cytoplasmic vacuolization in both epithelial and connective tissues and a different pattern of expression of HIF1alpha protein that correlate to the time of death. In conclusion, our preliminary findings suggest that ultrastructural investigations in combination with immunohistochemistry techniques in gingival specimens may represent a new tool to accurately and systematically estimate post-mortem interval.
description: Italian Journal of Anatomy and Embryology, Vol. 122, No. 1 (Supplement) 2017
Additional file 7 of Automatic 3D cell segmentation of fruit parenchyma tissue from X-ray micro CT images using deep learning
Creators: name: Van Doorselaer, Leen
name: Verboven, Pieter
name: Nicolai, Bart
Publisher: name: figshare
Year: 2024
Subjects: subject: Artificial Intelligence and Image Processing
subject: FOS: Computer and information sciences

description: Additional file 7: 2D training of Cellpose network.
Cancer stem cells and miRNA in the early diagnosis of colorectal carcinoma
Creators: name: Farace, Cristiano
name: Serra, Marina
name: Pisano, Andrea
name: Oggiano, Riccardo
name: Griñan, Carmen
name: Gonzaléz, Gema Jiménez
name: Marchal, Juan Antonio
name: Montella, Andrea
name: Madeddu, Roberto
Publisher: name: Firenze University Press
Year: 2017
Subjects: Colorectal cancer; miRNA; CSCs; biomarkers; tissue; blood; diagnosis

description: Colorectal cancer represents the third cause of death for malignant tumor by incidence and mortality. Evidences suggest that tumor initiation, growth, invasion and cancer expansion are promoted by a small sub-population of tumor cells, called cancer stem cells (CSCs). On the other hand, MicroRNAs constitute a recently discovered class of small non-coding RNAs (about 22 nucletides) found in plants, animals and some viruses, that play key roles in the regulation of gene expression. An increasing number of studies have identified miRNAs as potential biomarkers for human cancer diagnosis, prognosis and therapeutic targets. However, a real translation of miRNA significance into the clinical practice deserves and needs further investigation. To this end, the aim of this work is to identify the expression of some specific microRNAs of this type of cancer, both in tissues and serum of cancer patients and in cancer stem cells, in order to allow early diagnosis. Therefore, some interesting microRNAs were chosen and their level was detected through amplification with real-time PCR method. A preliminary analysis of results shows that in some patients microRNA 21, 221, 18a, 210, 34a, 10b, 16 are overexpressed, while in others they manifest a lower expression. Instead, the microRNA 31 is always overexpressed. We think that this result is related to the clinical stage of the tumor, because patients with similar clinical stage show the same expression.
description: Italian Journal of Anatomy and Embryology, Vol. 122, No. 1 (Supplement) 2017
Parellsiphon commixtus Iredale 1940
Creators: name: Jenkins, Bruce
name: Köhler, Frank
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Siphonariida
Siphonariidae
Parellsiphon
Parellsiphon commixtus

description: Parellsiphon commixtus Iredale, 1940
Parellsiphon commixtus was introduced by Iredale (1940: 437 as a nomen nudum without description (Art. 13.1 of the Code). The name was not made available subsequently by Morrison (1972: 57; no description) nor White & Dayrat (2012: 61; not intentionally declared as new, Art. 86.2 of the Code). It remains an unavailable name.
description: Published as part of Jenkins, Bruce & Köhler, Frank, 2024, Hidden in plain sight: Systematic review of Indo-West Pacific Siphonariidae uncovers extensive cryptic diversity based on comparative morphology and mitochondrial phylogenetics (Mollusca, Gastropoda), pp. 1-217 in Megataxa 13 (1) on page 203, DOI: 10.11646/megataxa.13.1.1, http://zenodo.org/record/14984186
sj-docx-1-smo-10.1177_20503121221117853 – Supplemental material for Malaria infection and its association with socio-demographics, preventive measures, and co-morbid ailments among adult febrile patients in rural Southwestern Nigeria: A cross-sectional study
Creators: name: Ibrahim, Azeez Oyemomi
name: Bello, Ibrahim Sebutu
name: Shabi, Olabode Muftau
name: Omonijo, Adejumoke Oluwatosin
name: Ayodapo, Abayomi
name: Afolabi, Babatunde Adeola
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 111708 Health and Community Services
subject: FOS: Health sciences
subject: Cardiology
subject: 110599 Dentistry not elsewhere classified
subject: FOS: Clinical medicine
subject: 110305 Emergency Medicine
subject: 110306 Endocrinology
subject: 110308 Geriatrics and Gerontology
subject: 110904 Neurology and Neuromuscular Diseases
subject: 111099 Nursing not elsewhere classified
subject: 111199 Nutrition and Dietetics not elsewhere classified
subject: 111299 Oncology and Carcinogenesis not elsewhere classified
subject: 110314 Orthopaedics
subject: 110604 Sports Medicine
subject: 110315 Otorhinolaryngology
subject: 111702 Aged Health Care
subject: 111403 Paediatrics
subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: 111799 Public Health and Health Services not elsewhere classified
subject: 110203 Respiratory Diseases
subject: 160807 Sociological Methodology and Research Methods
subject: FOS: Sociology
subject: 110323 Surgery
subject: 70706 Veterinary Medicine
subject: FOS: Veterinary sciences

description: Supplemental material, sj-docx-1-smo-10.1177_20503121221117853 for Malaria infection and its association with socio-demographics, preventive measures, and co-morbid ailments among adult febrile patients in rural Southwestern Nigeria: A cross-sectional study by Azeez Oyemomi Ibrahim, Ibrahim Sebutu Bello, Olabode Muftau Shabi, Adejumoke Oluwatosin Omonijo, Abayomi Ayodapo and Babatunde Adeola Afolabi in SAGE Open Medicine
Effects of melatonin oral treatment in pristane-induced lupus nephritis mice
Creators: name: Favero, Gaia
name: Dos Santos, Mariane
name: Lonati, Claudio
name: Stacchiotti, Alessandra
name: Rezzani, Rita
Publisher: name: Firenze University Press
Year: 2017
Subjects: Lupus nephritis; fibrosis; kidney; inflammation; melatonin; oxidative stress

description: Systemic lupus erythematosus (SLE) is a chronic autoimmune disease characterized by lymphocytes hyperactivity and excessive production of pathogenic autoantibodies, pro-inflammatory cytokines and also reactive oxygen species [1]. One of the most severe manifestations of SLE is lupus nephritis (LN), which is characterized by glomerulonephritis and tubulointerstitial inflammation and oxidative stress with also immune-complexes depositing in the renal tissue [2]. Recent evidences suggest that the use of antioxidants in the treatment of LN have satisfactory outcomes. Melatonin is a small, highly conserved pineal indoleamine and due to its important and well known antioxidant and antinflammatory properties [3,4] may be an efficient tool against LN damages. In this study, pristane-induced LN mice were used to investigate the potential protective role of melatonin. At the end of the treatments, the LN animal model presented marked changes in the kidney cytoarchitecture (like glomerular sclerosis, marked tubular degeneration and matrix mesangial expansion) together with significative kidney inflammation, oxidative stress and fibrosis. Interestingly, pristane-mice treated orally with melatonin showed a significative reduction of inflammation, oxidative stress and fibrosis and also of morphological changes at both tubules and glomerular level. In summary, we thought that melatonin may be a potential tool in the management of SLE-glomerulonephritis. Flamma S.p.A.-Italy (www.flammagroup.com) provided with melatonin. Thanks to Fondazione Cariplo e Regione Lombardia “New opportunities and ways towards ERC” (Project 2014-2256) for the grant support.
description: Italian Journal of Anatomy and Embryology, Vol. 122, No. 1 (Supplement) 2017
Nutrient excess in a stabilized co-culture system of Caco2/HT-29 cells: an ultrastructural and functional time-course study
Creators: name: Ferraretto, Anita
name: Bottani, Michela
name: Cornaghi, Laura
name: Donetti, Elena
Publisher: name: Firenze University Press
Year: 2017
Subjects: Transmission electron microscopy; cell differentiation; hydrolase activity

description: The intestine represents one of the most important barriers of our body and interacts with several exogenous substances, among which nutrients. Today, the effects due to an excess of nutrients on intestinal morpho-functional changes, similar to the ones found in obesity, have been studied only in in vivo animal models. Many experimental difficulties hampered in establishing a physiological long-term experimental model starting from primary cultures of normal small intestinal and colon cells. For this reason, an intestinal Caco2/HT-29 (70/30) co-culture was set up in our lab starting from the differentiated parental cell populations to mimic the human intestinal epithelium. Co-culture was harvested at confluence (T0) and at 3, 7, and 15 days (T3, T7, and T15, respectively) post-confluence. Ultrastructural (TEM) and functional analysis (Alkaline Phosphatase, ALP; Aminopeptidase N, APN; Dipeptidyl Peptidase-IV , DPPIV; Transepithelial Electrical Resistance, TEER) were carried out. In the present study, two parallel experimental groups were cultured: the standard group and the excess group. In the standard group, the culture medium was changed every four days, whilst in the excess group on alternate days from T0. Transmission electron microscopy revealed that the excess of nutrients drives co-cultures towards a less differentiated absorptive phenotype. On the other hand, mucus granule presence was more and more evident from T3. The specific activity of ALP and APN, known markers of intestinal differentiation, and that of DPPIV, a specific marker of enterocyte differentiation, progressively increased. TEER, indicative of the barrier properties of the co-culture, increased at post confluence up to T15. In conclusion, data here presented show that the excess of nutrients can directly modify both morphology and function of the intestinal cells, opening the way to study at the effects due to specific nutrients on cell proliferation and differentiation involved in the acquisition of an obese human phenotype.
description: Italian Journal of Anatomy and Embryology, Vol. 122, No. 1 (Supplement) 2017
Theoretical and Hardware Simulation Studies of Adaptive Virtual Inertia Control Strategy for Synchronverter in Grid-Connected Solar Power System
Creators: name: YAP, KAH YUNG
Publisher: name: Monash University
Year: 2022
Subjects: classificationCode: 401703
subject: Energy generation, conversion and storage (excl. chemical and electrical)
classificationCode: 400803
subject: Electrical energy generation (incl. renewables, excl. photovoltaics)

description: In this thesis, an adaptive virtual inertia control strategy for synchronverter has been proposed to stabilize the operating frequency of a grid-connected solar power system under dynamic weather. Its effectiveness has been validated by MATLAB®/ Simulink simulation and Typhoon® Hardware-in-the-loop 402 by comparing it against conventional proportional-integral and fuzzy logic-based synchronverters. The results indicated that the proposed method had reduced the maximum frequency deviation, settling time to reach quasi-steady-state frequency and steady-state error by at least 0.1Hz, 35% and 27%, respectively. This research aims to accelerate the transformation towards grid-connected solar power systems by innovating renewable sources grid interfacing systems.