cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 11: of Testing the relationship between microbiome composition and flux of carbon and nutrients in Caribbean coral reef sponges
Creators: name: Gantt, Shelby
name: McMurray, Steven
name: Stubler, Amber
name: Finelli, Christopher
name: Pawlik, Joseph
name: Erwin, Patrick
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology

description: Significant differences in correlated microbial abundance and POC specific filtration rates for all sponges sampled at both sites that had more than 2 individuals sampled at each site and a significant P-value (< 0.05). (DOCX 56 kb)
Monocystis pontodrili Subbarao et al. 1979
Creators: name: Sarkar, Sutapa
name: Bandyopadhyay, Probir K.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Chromista
Miozoa
Eugregarinida
Monocystidae
Monocystis
Monocystis pontodrili

description: 21) Monocystis pontodrili Subbarao et al. 1979
 Infested organ. Seminal vesicles, coelom, body muscle
 Type host. Pontodrilus bermudensis
 Type locality. Lalbag, Murshidabad, West Bengal, India
 Description. Elongated or cylindrical, 350 × 150 µm Mucron present. Cyst also embedded in body muscle, size 350 × 160 µm. Gamets are isogamous, 4.0 − 4.5 in diameter. Spores boat shaped, 8.0 × 3.2 µm.
description: Published as part of Sarkar, Sutapa & Bandyopadhyay, Probir K., 2013, A checklist of the species under the genus Monocystis Von Stein, 1848 (Apicomplexa: Sporozoa: Monocystidae) described from oligochaete hosts, pp. 381-388 in Zootaxa 3710 (4) on page 386, DOI: 10.11646/zootaxa.3710.4.7, http://zenodo.org/record/6164248
The Evolution of Renewable Energy Policy in OECD Countries: Aggregate Indicators and Determinants
Creators: name: Nicolli, Francesco
name: Vona, Francesco
name: Nicolli, Francesco
name: Vona, Francesco
Publisher: name: Unknown
Year: 2012
Subjects: subject: Resource /Energy Economics and Policy
subject: Renewable Energy Policy
subject: Political Economy
subject: Product Market Regulation
subject: Lobbying
subject: Policy Indicators

description: This paper proposes different methods to aggregate heterogeneous policies for renewable energy. We compare time-varying indicators built using principal component analysis with average-based indicators. The main goal of the paper is to account for the evolution of both types of policy indicators with a set of common variables. Our empirical results are consistent with predictions of political-economy models of environmental policies as lobbying, income and, to a less extent, inequality have expected effects on policy. The brown lobbying power, proxied by entry barriers in the energy sector, has negative influence on the policy indicators even when taking into account endogeneity in its effect. The results are also robust to dynamic panel specifications and to the exclusion of groups of countries. Interestingly, too, corruption has only an indirect effect on policy mediated by entry barriers, while the negative effect of inequality is much stronger for the richer countries.
$W^{s,\frac{n}{s}}$-maps with positive distributional Jacobians
Creators: name: Li, Siran
name: Schikorra, Armin
Publisher: name: arXiv
Year: 2019
Subjects: subject: Analysis of PDEs (math.AP)
subject: Differential Geometry (math.DG)
subject: Functional Analysis (math.FA)
subject: FOS: Mathematics

description: We extend the well-known result that any $f \in W^{1,n}(Ω,\mathbb{R}^n)$, $Ω\subset \mathbb{R}^n$ with strictly positive Jacobian is actually continuous: it is also true for fractional Sobolev spaces $W^{s,\frac{n}{s}}(Ω)$ for any $s \geq \frac{n}{n+1}$, where the sign condition on the Jacobian is understood in a distributional sense. Along the way we also obtain extensions to fractional Sobolev spaces $W^{s,\frac{n}{s}}$ of the degree estimates known for $W^{1,n}$-maps with positive or non-negative Jacobian, such as the sense-preserving property.
Closed-form solutions of spinning, eccentric binary black holes at 1.5 post-Newtonian order
Creators: name: Samanta, Rickmoy
name: Tanay, Sashwat
name: Stein, Leo C.
Publisher: name: arXiv
Year: 2022
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: The closed-form solution of the 1.5 post-Newtonian (PN) accurate binary black hole (BBH) Hamiltonian system has proven to be difficult to obtain for a long time since its introduction in 1966. Closed-form solutions of the PN BBH systems with arbitrary parameters (masses, spins, eccentricity) are required for modeling the gravitational waves (GWs) emitted by them. Accurate models of GWs are crucial for their detection by LIGO/Virgo and LISA. Only recently, two solution methods for solving the BBH dynamics were proposed in arXiv:1908.02927 (without using action-angle variables), and arXiv:2012.06586, arXiv:2110.15351 (action-angle based). This paper combines the ideas laid out in the above articles, fills the missing gaps and provides the two solutions which are fully 1.5PN accurate. We also present a public Mathematica package BBHpnToolkit which implements these two solutions and compares them with a fully numerical treatment. The level of agreement between these solutions provides a numerical verification for all the five actions constructed in arXiv:2012.06586, and arXiv:2110.15351. This paper hence serves as a stepping stone for pushing the action-angle-based solution to 2PN order via canonical perturbation theory.
description: (2+15) pages, (1+4) figures. This version is composed of an erratum (wrt. the previous arXiv preprint version), and the fully revised article appended thereafter
Global Analysis with SNO: Toward the Solution of the Solar Neutrino Problem
Creators: name: Krastev, P. I.
name: Smirnov, A. Yu.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: We perform a global analysis of the latest solar neutrino data including the SNO result on the CC-event rate. This result further favors the LMA solution of the solar neutrino problem. The best fit values of parameters we find are: Δm^2 = (4.8 - 5.0)10^{-5} eV^2, tan^2 θ= 0.35 - 0.38, f_B = 1.08 - 1.12, and f_{hep} = 1 - 4. With respect to this best fit the LOW solution is accepted at 90% C.L.. The Vacuum oscillation solution with Δm^2 = 1.4 10^{-10} eV^2, gives good fit of the data provided that the boron neutrino flux is substantially smaller than the SSM flux (f_B \sim 0.5). The SMA solution is accepted only at 3σlevel. We find that vacuum oscillations to sterile neutrino, VAC(sterile), with f_B \sim 0.5 also give rather good global fit of the data. All other sterile solutions are strongly disfavored. We check the quality of the fit by constructing the pull-off diagrams of observables. Predictions for the day-night asymmetry, spectrum distortion and NC/CC ratio at SNO are calculated. In the best fit points of the global solutions we find: A_{DN}^{CC} \approx (7 - 8)% for LMA, \sim 3% for LOW, and (2 - 3)% for SMA. It will be difficult to see the distortion of the spectrum expected for LMA as well as LOW solutions. However, future SNO spectral data can significantly affect the VAC and SMA solutions. We also calculate expectations for the BOREXINO rate.
description: 35 pages, latex, 9 figures; results of analysis slightly changed due to different treatment of the hep neutrino flux; predictions for NC/CC ratio and Borexino rate added
Costarina macho Platnick & Berniker & Víquez 2014, new species
Creators: name: Platnick, Norman I.
name: Berniker, Lily
name: Víquez, Carlos
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Oonopidae
Costarina
Costarina macho

description: Costarina macho, new species (Figures 315–325)
TYPES: Male holotype, female allotype, and male paratype sifted from forest litter taken at an elevation of 2850 m in the Reserva Forestal Río Macho, km 70 on the Inter-American Highway, 9°39′N, 83°51′W, Cartago, Costa Rica (Mar. 22–26, 1999; J. Miller), deposited in USNM (PBI_OON 27842).
 DIAGNOSIS: Males resemble those of C. cuerici (cf. figs. 279–289 and C. junio (cf. figs. 290–300) but the lightly sclerotized portion of the distal embolar prong is much smaller and the distal prong is wider than in those species (figs. 315–320). Females resemble those of C. cuerici but have a much narrower, rectangular genital atrium (figs. 324, 325).
 MALE (PBI_OON 27842, figs. 315–320): Total length 2.46. Both processes on endite basally widened. Femur II p0-0-1; tibia I v4-4-2. Embolus proximal prong elongated, narrow; distal prong reflexed ventrally, with narrow translucent flange on prolateral side (N = 6).
 FEMALE (PBI_OON 27842, figs. 321–325): Total length 2.51. Spination typical. Genital atrium short, anterior margin medially excavated, posterior margin weak (N = 6).
DISTRIBUTION: Cartago.
description: Published as part of Platnick, Norman I., Berniker, Lily & Víquez, Carlos, 2014, The Goblin Spider Genus Costarina (Araneae, Oonopidae), Part 2: the Costa Rican fauna, pp. 1-76 in American Museum Novitates 2014 (3794) on page 66, DOI: 10.1206/3794.1, http://zenodo.org/record/5365505
Commutators and generators
Creators: name: Burns, Robert John
Publisher: name: The Australian National University
Year: 1987
Subjects: subject: Hilbert space
subject: Quantum field theory
subject: Commutators (Operator theory)

description: Since the late 1960's mathematicians working mainly in the area of quantum field theory have used commutator estimates to prove self-adjointness of operators on Hilbert space. Recently, these results were extended and codified into a theory in the papers [BaR], [Rob 1], and [Rob 2]. The following thesis is based largely upon the above reports.
Nuclear Recoil Calibration at Sub-keV Energies in LUX and Its Impact on Dark Matter Search Sensitivity
Creators: name: LUX Collaboration
name: Akerib, D. S.
name: Alsum, S.
name: Araújo, H. M.
name: Bai, X.
name: Balajthy, J.
name: Bang, J.
name: Baxter, A.
name: Bernard, E. P.
name: Bernstein, A.
name: Biesiadzinski, T. P.
name: Boulton, E. M.
name: Boxer, B.
name: Brás, P.
name: Burdin, S.
name: Byram, D.
name: Carmona-Benitez, M. C.
name: Chan, C.
name: Cutter, J. E.
name: de Viveiros, L.
name: Druszkiewicz, E.
name: Fan, A.
name: Fiorucci, S.
name: Gaitskell, R. J.
name: Ghag, C.
name: Gilchriese, M. G. D.
name: Gwilliam, C.
name: Hall, C. R.
name: Haselschwardt, S. J.
name: Hertel, S. A.
name: Hogan, D. P.
name: Horn, M.
name: Huang, D. Q.
name: Ignarra, C. M.
name: Jacobsen, R. G.
name: Jahangir, O.
name: Ji, W.
name: Kamdin, K.
name: Kazkaz, K.
name: Khaitan, D.
name: Korolkova, E. V.
name: Kravitz, S.
name: Kudryavtsev, V. A.
name: Leason, E.
name: Lesko, K. T.
name: Liao, J.
name: Lin, J.
name: Lindote, A.
name: Lopes, M. I.
name: Manalaysay, A.
name: Mannino, R. L.
name: Marangou, N.
name: McKinsey, D. N.
name: Mei, D. -M.
name: Morad, J. A.
name: Murphy, A. St. J.
name: Naylor, A.
name: Nehrkorn, C.
name: Nelson, H. N.
name: Neves, F.
name: Nilima, A.
name: Oliver-Mallory, K. C.
name: Palladino, K. J.
name: Rhyne, C.
name: Riffard, Q.
name: Rischbieter, G. R. C.
name: Rossiter, P.
name: Shaw, S.
name: Shutt, T. A.
name: Silva, C.
name: Solmaz, M.
name: Solovov, V. N.
name: Sorensen, P.
name: Sumner, T. J.
name: Swanson, N.
name: Szydagis, M.
name: Taylor, D. J.
name: Taylor, R.
name: Taylor, W. C.
name: Tennyson, B. P.
name: Terman, P. A.
name: Tiedt, D. R.
name: To, W. H.
name: Tvrznikova, L.
name: Utku, U.
name: Vacheret, A.
name: Vaitkus, A.
name: Velan, V.
name: Webb, R. C.
name: White, J. T.
name: Whitis, T. J.
name: Witherell, M. S.
name: Wolfs, F. L. H.
name: Woodward, D.
name: Xiang, X.
name: Xu, J.
name: Zhang, C.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: Dual-phase xenon time projection chamber (TPC) detectors offer heightened sensitivities for dark matter detection across a spectrum of particle masses. To broaden their capability to low-mass dark matter interactions, we investigated the light and charge responses of liquid xenon (LXe) to sub-keV nuclear recoils. Using neutron events from a pulsed Adelphi Deuterium-Deuterium neutron generator, an in situ calibration was conducted on the LUX detector. We demonstrate direct measurements of light and charge yields down to 0.45 keV and 0.27 keV, respectively, both approaching single quanta production, the physical limit of LXe detectors. These results hold significant implications for the future of dual-phase xenon TPCs in detecting low-mass dark matter via nuclear recoils.
Australian manufacturing industry policy : 1965-1985
Creators: name: Stewart, Jennifer Beryl
Publisher: name: The Australian National University
Year: 1988
Subjects: subject: Manufactures HistoryAustralia

description: The thesis argues that Australian federal governments have failed to produce coherent policies for the development of manufacturing. It is further argued that the principal reason for this failure was fragmentation: industrial, bureaucratic, political and ideological. The argument is sustained by formulating a general empirical model of the policymaking system, and then showing how its particular structural form in Australia produced the effects described. A lack of collective will among industry organisations, poor bureaucratic coordination and ideological confusion combined to produce inconsistent and disjointed responses to changes in the economic environment. The study raises, and sheds some light on, a number of theoretical issues: the nature of policy, the problem of collective action, and the role of ideas in political systems.
A neutron star model in the nonlinear Relativistic Mean-Field Theory
Creators: name: Bednarek, Ilona
name: Manka, Ryszard
Publisher: name: arXiv
Year: 2002
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: The neutron star parameters in the RMF model extended by the inclusion of delta meson and additional nonlinear vector meson interactions are studied.
description: 4 pages, 4 figures, Proceedings of the 17th Divisional Conference on Nuclear Physics in Astrophysics (NPDC17), 30th September-4th October 2002, ATOMKI, Debrecen, Hungary, to appear in Nuclear Physics A
Building SSPs for Climate Policy Analysis: A Scenario Elicitation Methodology to Map the Space of Possible Future Challenges to Mitigation and Adaptation
Creators: name: Rozenberg, Julie
name: Celine, Guivarch
name: Lempert, Robert
name: Hallegatte, Stephane
name: Rozenberg, Julie
name: Celine, Guivarch
name: Lempert, Robert
name: Hallegatte, Stephane
Publisher: name: Unknown
Year: 2012
Subjects: subject: Environmental Economics and Policy
subject: Socio-Economic Scenarios
subject: Climate Policy
subject: Mitigation
subject: Adaptation
subject: Shared Socio-Economic Pathways
subject: Scenario Elicitation Methodology

description: The scientific community is now developing a new set of scenarios, referred to as Shared Socio-economic Pathways (SSPs) to replace the SRES scenarios. To be used to investigate adaptation and mitigation, SSPs need to be contrasted along two axes: challenges to mitigation, and challenges to adaptation. This paper proposes a methodology to develop SSPs with a “backward” approach. The methodology is based on (i) an a priori identification of potential drivers of mitigation and adaptation challenges; (ii) a modelling exercise to transform these drivers into a large set of scenarios; (iii) an a posteriori selection of a few SSPs among these scenarios, such that they cover the uncertainty space in terms of challenges to adaptation and mitigation. This methodology is applied to the selection of a few SSPs, but it could also be applied to any specific decisions faced by decision-makers. From a large database of runs built by many models, the methodology would allow selecting the most relevant scenarios for a specific decision, i.e. scenarios that best predict when the analyzed choice performs poorly or well.
Additional file 4: of DNA-PKcs modulates progenitor cell proliferation and fibroblast senescence in idiopathic pulmonary fibrosis
Creators: name: Habiel, David
name: Hohmann, Miriam
name: Espindola, Milena
name: Coelho, Ana
name: Jones, Isabelle
name: Jones, Heather
name: Carnibella, Richard
name: Pinar, Isaac
name: Werdiger, Freda
name: Hogaboam, Cory
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Physiology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Plant Biology
subject: 60506 Virology

description: Figure S4. Immunofluorescence IgG control staining of IPF lung tissues. Normal or IPF lung explants were stained IgG antibodies followed by fluorescently conjugated secondary antibodies and microscopy analysis. Representative images from two IPF patients are shown stained with IgG + Alexa Flour 488 conjugated secondary antibody (left), IgG + Alexa Flour 594 conjugated secondary antibody (middle) and the merged composite (right) acquired at 200x magnification. (PDF 405 kb)
Resonant-state expansion applied to three-dimensional open optical systems: A complete set of static modes
Creators: name: Lobanov, S. V.
name: Langbein, W.
name: Muljarov, E. A.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Optics (physics.optics)
subject: Classical Physics (physics.class-ph)
subject: FOS: Physical sciences

description: We present two alternative complete sets of static modes of a homogeneous dielectric sphere, for their use in the resonant-state expansion (RSE), a rigorous perturbative method in electrodynamics. Physically, these modes are needed to correctly describe the static electric field of a charge redistribution within the optical system due to a perturbation of the permittivity. We demonstrate the convergence of the RSE towards the exact result for a perturbation describing a size reduction of the basis sphere. We then revisit the quarter-sphere perturbation treated in [Doost {\it et al.}, Phys. Rev. A {\bf 90}, 013834 (2014)], where only a single static mode per each angular momentum was introduced, and show that using a complete set of static modes leads to a small, though non-negligible correction of the RSE result, improving the agreement with finite-element simulations. As another example of applying the RSE with a complete set of static modes, we calculate the resonant states of a dielectric cylinder, also comparing the result with a finite-element simulation.
description: 11 pages, 5 figures
Taim hangre : variation in subsistence food supply in the Papua New Guinea highlands
Creators: name: Bourke, Mike
Publisher: name: The Australian National University
Year: 1988
Subjects: subject: Food supply Papua New Guinea

description: This research seeks to understand the causes of variation in subsistence food supply in the highlands of Papua New Guinea, particularly the reasons for shortages of sweet potato, the staple food. The study is regional, but the most intensive observations and data are from two provinces and from one community in each of these provinces. Two main indices of subsistence food supply are used: firstly, survey data from food markets and secondly, statements made by villagers about food supply, as documented by outside observers. Particular emphasis is given to long data runs on food availability. Food shortages have an impact on people’s wellbeing. Prior to the colonial period, they resulted in an increased death rate. Body weights of both adults and children are influenced by variation in subsistence food supply. The impact of food shortages is likely to be muted when people have access to cash which they use to buy imported food when subsistence food is scarce. Evidence is brought forward which demonstrates that the frequency of food supply problems has not altered since colonial contact in the 1930s. Activities associated with cash cropping, labour migration or harvesting of a pandanus nut, which are commonly put forward as explanations for food shortages, are eliminated as causal factors. Disruptions associated with pig killing ceremonies and tribal fighting may be contributing factors at times, but their impact is limited. The food production systems in the highlands are sufficiently flexible to absorb short term fluctuations in planting rate and crop yield. Long run rainfall records, market price series and crop planting data are used to demonstrate that the major causes of variation in supply are climatic extremes, particularly extended wet periods and frost, and variation in the crop planting rate. Only the most severe droughts cause food shortages, unless a drought is preceded by an extended wet period. In the latter situation, droughts may become a contributing factor. Wet periods appear to be most damaging when the sweet potato tubers are being initiated and droughts reduce yield during the rapid bulking phase. Frost damage sometimes results in food shortages at high altitude locations, but this is uncommon below 2200 m. Villagers vary their planting rates according to the current supply of sweet potato. They plant larger areas when sweet potato is scarce, and a higher proportion of plantings is then made in fallow land. This behaviour initiates a cycle in planting, similar to the well known "hog price cycle", and this may eventually result in another food shortage, particularly if lower planting rates coincide with a climatic extreme. A model is presented that combines these elements to calculate the supply of sweet potato over a five year period in two locations. The calculated food supply is in good agreement with indices of food availability for the same period.
Monocystis ranaghatensis Bandyopadhyay & Mitra 2005
Creators: name: Sarkar, Sutapa
name: Bandyopadhyay, Probir K.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Chromista
Miozoa
Eugregarinida
Monocystidae
Monocystis
Monocystis ranaghatensis

description: 22) Monocystis ranaghatensis Bandyopadhyay &Mitra, 2005
 Infested organ. Seminal vesicles
 Type host. Eutyphoeus waltoni
 Type locality. Ranaghat, Nadia, West Bengal, India
 Description. Trophozoites of M. ranaghatensis are napiform, having a nearly spheroid to ellipsoid or ovoid body, 119.0 − 167.0 (124.0±11.0) µm × 57.0 − 84.0 (62.0±1.9) µm with a prominent tail like structure at the posterior end and ellipsoidal nucleus measures, 9.0 − 22.0 (12.0±0.4) µm × 9.0 − 13.0 (10.0±1.5) µm. Gametocysts are eggshaped measuring 95.0-124.0 (105.0±0.9) µm Oocysts are biconical measuring 7.6 − 10.1 (9.3±1.1) µm ×4.1 − 5.6 (4.5±1.3) µm.
description: Published as part of Sarkar, Sutapa & Bandyopadhyay, Probir K., 2013, A checklist of the species under the genus Monocystis Von Stein, 1848 (Apicomplexa: Sporozoa: Monocystidae) described from oligochaete hosts, pp. 381-388 in Zootaxa 3710 (4) on page 386, DOI: 10.11646/zootaxa.3710.4.7, http://zenodo.org/record/6164248
Additional file 3: of DNA-PKcs modulates progenitor cell proliferation and fibroblast senescence in idiopathic pulmonary fibrosis
Creators: name: Habiel, David
name: Hohmann, Miriam
name: Espindola, Milena
name: Coelho, Ana
name: Jones, Isabelle
name: Jones, Heather
name: Carnibella, Richard
name: Pinar, Isaac
name: Werdiger, Freda
name: Hogaboam, Cory
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Figure S3. Ingenuity canonical pathways enriched in Slow-IPF SSEA4+ and SSEA4− cells compared to normal cells. SSEA4+ cells were sorted from normal and IPF lung fibroblast cultures. RNA was extracted from the sorted cells SSEA4+ and non-sorted SSEA4− cells and subject to RNA sequencing analysis as previously described (GSE103488). (A-B) Shown are Ingenuity canonical pathway analysis of Slow-IPF versus normal SSEA4+ cells (A) and Slow-IPF versus normal SSEA4− cells (B). Ingenuity was set to consider transcripts with an FPKM value ≥0.2 and a fold change ≥1.5 & ≤ − 1.5 (A) and FPKM value ≥1 and a fold change ≥1.5 & ≤ − 1.5 (B). Percentage depicts the proportion of transcripts from the transcriptomic analysis that are annotated in the Ingenuity canonical pathway. The percentage of transcripts that are downregulated or upregulated in each canonical pathway are depicted in green or red, respectively. (PDF 793 kb)
PRICE DAMPING AND PRICE INSULATING EFFECTS OF WHEAT EXPORT RESTRICTIONS IN KAZAKHSTAN, RUSSIA, AND UKRAINE
Creators: name: Gotz, Linde
name: Djuric, Ivan
name: Glauben, Thomas
name: Gotz, Linde
name: Djuric, Ivan
name: Glauben, Thomas
Publisher: name: Unknown
Year: 2014
Subjects: subject: Crop Production/Industries
subject: Demand and Price Analysis
subject: export controls
subject: market integration
subject: price transmission
subject: crisis policy
subject: Russia

description: This study analyzes the domestic price effects of export controls for all 3 KRU countries during the 2007/08 as well as the 2010/11 commodity price peaks. We develop two indicators to measure the strength of the export controls’ price damping and price insulating effect within a non-linear long-run price transmission model. Our analysis comprises 11 cases of export controls, distinguishing regional price effects within Russia. We observe heterogeneity in the damping and insulating effects of the export controls among the KRU and among the regions of Russia. Our model identifies the strongest domestic price effects during the export ban in North Caucasus (Russia), which were transmitted to Central, Black Earth and Volga regions by wheat flows from North Caucasus. For Ukraine the strongest price effects are observed during the export tax system 2011. The price effects identified for the 2006/7, 2007/8 and 2010/11 export quota systems are comparable to those observed for Central, Black Earth and Volga region. Contrary, our results do not identify any price effects of the export ban in Russia on Ural and West Siberia. We also do not find price decreasing effects during the export ban in Kazakhstan and the export tax system in Russia 2007/8. Concluding, the effectiveness of export controls in the KRU to dampen and decouple domestic wheat prices from world market price developments is generally rather limited.
Population dynamics in river networks
Creators: name: Jin, Yu
name: Peng, Rui
name: Shi, Junping
Publisher: name: arXiv
Year: 2019
Subjects: subject: Analysis of PDEs (math.AP)
subject: FOS: Mathematics

description: Natural rivers connect to each other to form networks. The geometric structure of a river network can significantly influence spatial dynamics of populations in the system. We consider a process-oriented model to describe population dynamics in river networks of trees, establish the fundamental theories of the corresponding parabolic problems and elliptic problems, derive the persistence threshold by using the principal eigenvalue of the eigenvalue problem, and define the net reproductive rate to describe population persistence or extinction. By virtue of numerical simulations, we investigate the effects of hydrological, physical, and biological factors, especially the structure of the river network, on population persistence.
Robust angle-based transfer learning in high dimensions
Creators: name: Gu, Tian
name: Han, Yi
name: Duan, Rui
Publisher: name: arXiv
Year: 2022
Subjects: subject: Methodology (stat.ME)
subject: FOS: Computer and information sciences

description: Transfer learning aims to improve the performance of a target model by leveraging data from related source populations, which is known to be especially helpful in cases with insufficient target data. In this paper, we study the problem of how to train a high-dimensional ridge regression model using limited target data and existing regression models trained in heterogeneous source populations. We consider a practical setting where only the parameter estimates of the fitted source models are accessible, instead of the individual-level source data. Under the setting with only one source model, we propose a novel flexible angle-based transfer learning (angleTL) method, which leverages the concordance between the source and the target model parameters. We show that angleTL unifies several benchmark methods by construction, including the target-only model trained using target data alone, the source model fitted on source data, and distance-based transfer learning method that incorporates the source parameter estimates and the target data under a distance-based similarity constraint. We also provide algorithms to effectively incorporate multiple source models accounting for the fact that some source models may be more helpful than others. Our high-dimensional asymptotic analysis provides interpretations and insights regarding when a source model can be helpful to the target model, and demonstrates the superiority of angleTL over other benchmark methods. We perform extensive simulation studies to validate our theoretical conclusions and show the feasibility of applying angleTL to transfer existing genetic risk prediction models across multiple biobanks.
Distinguishing separable and entangled states
Creators: name: Doherty, Andrew C.
name: Parrilo, Pablo A.
name: Spedalieri, Federico M.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We show how to design families of operational criteria that distinguish entangled from separable quantum states. The simplest of these tests corresponds to the well-known Peres-Horodecki positive partial transpose (PPT) criterion, and the more complicated tests are strictly stronger. The new criteria are tractable due to powerful computational and theoretical methods for the class of convex optimization problems known as semidefinite programs. We successfully applied the results to many low-dimensional states from the literature where the PPT test fails. As a byproduct of the criteria, we provide an explicit construction of the corresponding entanglement witnesses.
description: 4 pages, Latex2e. Expanded discussion of numerical procedures. Accepted for publication in Physical Review Letters
Decision-Oriented Communications: Application to Energy-Efficient Resource Allocation
Creators: name: Zou, Hang
name: Zhang, Chao
name: Lasaulce, Samson
name: Saludjian, Lucas
name: Panciatici, Patrick
Publisher: name: arXiv
Year: 2019
Subjects: subject: Machine Learning (cs.LG)
subject: Networking and Internet Architecture (cs.NI)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: In this paper, we introduce the problem of decision-oriented communications, that is, the goal of the source is to send the right amount of information in order for the intended destination to execute a task. More specifically, we restrict our attention to how the source should quantize information so that the destination can maximize a utility function which represents the task to be executed only knowing the quantized information. For example, for utility functions under the form $u\left(\boldsymbol{x};\ \boldsymbol{g}\right)$, $\boldsymbol{x}$ might represent a decision in terms of using some radio resources and $\boldsymbol{g}$ the system state which is only observed through its quantized version $Q(\boldsymbol{g})$. Both in the case where the utility function is known and the case where it is only observed through its realizations, we provide solutions to determine such a quantizer. We show how this approach applies to energy-efficient power allocation. In particular, it is seen that quantizing the state very roughly is perfectly suited to sum-rate-type function maximization, whereas energy-efficiency metrics are more sensitive to imperfections.
Projective model structures on diffeological spaces and smooth sets and the smooth Oka principle
Creators: name: Pavlov, Dmitri
Publisher: name: arXiv
Year: 2022
Subjects: subject: Algebraic Topology (math.AT)
subject: Category Theory (math.CT)
subject: Differential Geometry (math.DG)
subject: FOS: Mathematics
subject: 58A40, 18N40, 55U35 (Primary) 58A99, 57R55, 57P99, 58B25, 58A12, 58B05 (Secondary)

description: In the first part of the paper, we prove that the category of diffeological spaces does not admit a model structure transferred via the smooth singular complex functor from simplicial sets, resolving in the negative a conjecture of Christensen and Wu, in contrast to Kihara's model structure on diffeological spaces constructed using a different singular complex functor. Next, motivated by applications in quantum field theory and topology, we embed diffeological spaces into sheaves of sets (not necessarily concrete) on the site of smooth manifolds and study the proper combinatorial model structure on such sheaves transferred via the smooth singular complex functor from simplicial sets. We show the resulting model category to be Quillen equivalent to the model category of simplicial sets. We then show that this model structure is cartesian, all smooth manifolds are cofibrant, and establish the existence of model structures on categories of algebras over operads. Finally, we use these results to establish analogous properties for model structures on simplicial presheaves on smooth manifolds, as well as presheaves valued in left proper combinatorial model categories, and prove a generalization of the smooth Oka principle established in arXiv:1912.10544. We apply these results to establish classification theorems for differential-geometric objects like closed differential forms, principal bundles with connection, and higher bundle gerbes with connection on arbitrary cofibrant diffeological spaces.
description: 34 pages. Comments and questions are welcome. v2: Identical to the journal version except for formatting and style
Super-localization of excitons in carbon nanotubes at cryogenic temperature
Creators: name: Raynaud, Christophe
name: Claude, Théo
name: Borel, Antoine
name: Amara, Mohamed-Raouf
name: Graf, Arko
name: Zaumseil, Jana
name: Lauret, Jean-Sébastien
name: Chassagneux, Yannick
name: Voisin, Christophe
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: At cryogenic temperature and at the single emitter level, the optical properties of single-wall carbon nanotubes depart drastically from that of a one-dimensional (1D) object. In fact, the (usually unintentional) localization of excitons in local potential wells leads to nearly 0D behaviors such as photon antibunching, spectral diffusion, inhomogeneous broadening, etc. Here, we present an hyperspectral imaging of this exciton self-localization effect at the single nanotube level using a super-resolved optical microscopy approach. We report on the statistical distribution of the traps localization, depth and width. We use a quasi-resonant photoluminescence excitation approach to probe the confined quantum states. Numerical simulations of the quantum states and exciton diffusion show that the excitonic states are deeply modified by the interface disorder inducing a remarkable discretization of the excitonic absorption spectrum and a quenching of the free 1D exciton absorption.
Bayesian View Of Solar Neutrino Oscillations
Creators: name: Garzelli, M. V.
name: Giunti, C.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Astrophysics (astro-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: Data Analysis, Statistics and Probability (physics.data-an)
subject: FOS: Physical sciences

description: We present the results of a Bayesian analysis of solar neutrino data in terms of nu_e->nu_{mu,tau} and nu_e->nu_s oscillations, where nu_s is a sterile neutrino. We perform a Rates Analysis of the rates of solar neutrino experiments, including the first SNO CC result, and spectral data of the CHOOZ experiment, and a Global Analysis that takes into account also the Super-Kamiokande day and night electron energy spectra. We show that the Bayesian analysis does not suffer any problem from the inclusion of the numerous bins of the CHOOZ and Super-Kamiokande energy spectra and allows to reach the same conclusions on the favored type of neutrino transitions and on the determination of the most favored values of the oscillation parameters in both the Rates and Global Analysis. Our Bayesian analysis shows that nu_e->nu_s transitions are strongly disfavored with respect to nu_e->nu_{mu,tau} transitions. In the case of nu_e->nu_{mu,tau} oscillations, the LMA region is favored by the data (86% probability), the LOW region has some small chance (13% probability), the VO region is almost excluded (1% probability) and the SMA region is practically excluded (0.01% probability). We calculate also the marginal posterior probability distributions for tan^2 theta and Delta m^2 and we show that the data imply large mixing almost with certainty and large values of Delta m^2 are favored. We present also the results of a standard least-squares analysis and we show that the standard goodness of fit test is not able to rejects pure nu_e->nu_s transitions. The likelihood ratio test allows to reject pure nu_e->nu_s transitions in favor of nu_e->nu_{mu,tau} transitions only in the Global Analysis.
description: 31 pages, 8 figures. Final version to be published in JHEP
Monocystis senchalensis Pradhan & Dasgupta 1982
Creators: name: Sarkar, Sutapa
name: Bandyopadhyay, Probir K.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Chromista
Miozoa
Eugregarinida
Monocystidae
Monocystis
Monocystis senchalensis

description: 23) Monocystis senchalensis Pradhan & Dasgupta, 1982
 Infested organ. Seminal vesicles
 Type host. Apporectodae trapezoides
 Type locality. Senchal, Darjeeling, West Bengal, India
 Description. Elongated, cylindrical, both ends blunt but middle portion widest. Trophozoite measures 43.02 − 185.4 µm × 10.8 − 18.6 µm. Nucleus spherical or ovoid, measures 6.48 − 12.6 µm. Oocyst biconical with 10.5 × 4.25 µm. Gametocyst not stated.
description: Published as part of Sarkar, Sutapa & Bandyopadhyay, Probir K., 2013, A checklist of the species under the genus Monocystis Von Stein, 1848 (Apicomplexa: Sporozoa: Monocystidae) described from oligochaete hosts, pp. 381-388 in Zootaxa 3710 (4) on page 386, DOI: 10.11646/zootaxa.3710.4.7, http://zenodo.org/record/6164248
Collective Properties of Low-lying Octupole Excitations in $^{208}_{82}Pb_{126}$, $^{60}_{20}Ca_{40}$ and $^{28}_{8}O_{20}$
Creators: name: Zhou, X. R.
name: Zhao, E. G.
name: Dong, B. G.
name: Zhang, X. Z.
name: Long, G. L.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: The octupole strengths of $β$-stable nucleus $^{208}_{82}Pb_{126}$, a neutron skin nucleus $^{60}_{20}Ca_{40}$ and a neutron drip line nucleus $^{28}_{8}O_{20}$ are studied by using the self-consistent Hartree-Fock calculation plus the random phase approximation (RPA) with Skyrme interaction. The collective properties of low-lying excitations are analyzed by using particle-vibration coupling. The results show that the lowest isoscalar states above threshold in $^{60}_{20}Ca_{40}$ and $^{28}_{8}O_{20}$ are the superpositions of collective excitations and unperturbed transitions from bound state to nonresonance states. For these three nuclei, both the low-lying isoscalar states and giant isoscalar resonance carry isovector strength. The ratio B(IV)/B(IS) is checked. It is found that, for $^{208}_{82}Pb_{126}$, the ratios are equal to $(\frac{N-Z}{A})^2$ in good accuracy, while for $^{60}_{20}Ca_{40}$ and $^{28}_{8}O_{20}$, the ratios are much larger than $(\frac{N-Z}{A})^2$. This results from the excess neutrons with small binding energies in $^{60}_{20}Ca_{40}$ and $^{28}_{8}O_{20}$.
description: 14 pages, 10 figures
First-principles study of the temperature-pressure phase diagram of BaTiO3
Creators: name: Iniguez, Jorge
name: Vanderbilt, D.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We investigate the temperature-pressure phase diagram of BaTiO_3 using a first-principles effective-Hamiltonian approach. We find that the zero-point motion of the ions affects the form of the phase diagram dramatically. Specifically, when the zero-point fluctuations are included in the calculations, all the polar (tetragonal, orthorhombic, and rhombohedral) phases of BaTiO_3 survive down to 0 K, while only the rhombohedral phase does otherwise. We provide a simple explanation for this behavior. Our results confirm the essential correctness of the phase diagram proposed by Ishidate et al. (Phys. Rev. Lett. 78, 2397 (1997)).
description: 4 pages with 4 postscript figures embedded. Uses REVTeX4. Also available at http://www.physics.rutgers.edu/~dhv/preprints/ji_press/index.html
Costarina cruz Platnick & Berniker & Víquez 2014, new species
Creators: name: Platnick, Norman I.
name: Berniker, Lily
name: Víquez, Carlos
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Oonopidae
Costarina
Costarina cruz

description: Costarina cruz, new species (Figures 326–336)
TYPES: Male holotype and female allotype from litter taken at an elevation of 5500 ft near a stream 1 km west of Santa Cruz de Turrialba on Route 230, Cartago, Costa Rica (Mar. 13, 1991; L. Herman), deposited in AMNH (PBI_OON 49230).
 DIAGNOSIS: Males resemble those of C. azul (cf. figs. 155–165) in having the distal embolar prong deeply bifid, producing a distinctive appearance, with three parallel, prolaterally directed flanges, but the teeth on the embolar base are much longer and the middle flange has a much wider base and a narrower tip (figs. 326–331); females also have fully fused ventral scuta but have a much smaller genital atrium (figs. 333–336).
 MALE (PBI_OON 49230, figs. 326–331): Total length 2.22. Endite ventral process arched ventrally; dorsal process long, narrow. Femur I r1-1-0; metatarsus I v2-2-2. Embolus proximal prong curving near tip; distal prong deeply bifid, with narrow tip (N = 1).
 FEMALE (PBI_OON 49230, figs. 332–336): Total length 2.47. Spination typical. Genital atrium almost completely filled by protuberant sclerotization (N = 1).
DISTRIBUTION: Cartago.
description: Published as part of Platnick, Norman I., Berniker, Lily & Víquez, Carlos, 2014, The Goblin Spider Genus Costarina (Araneae, Oonopidae), Part 2: the Costa Rican fauna, pp. 1-76 in American Museum Novitates 2014 (3794) on page 66, DOI: 10.1206/3794.1, http://zenodo.org/record/5365505
Discrimination emerging through spontaneous symmetry breaking in a spatial prisoner's dilemma model with multiple labels
Creators: name: Jensen, Gorm Gruner
name: Tischel, Frederik
name: Bornholdt, Stefan
Publisher: name: arXiv
Year: 2019
Subjects: subject: Adaptation and Self-Organizing Systems (nlin.AO)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Physics and Society (physics.soc-ph)
subject: Populations and Evolution (q-bio.PE)
subject: FOS: Physical sciences
subject: FOS: Biological sciences

description: Social discrimination seems to be a persistent phenomenon in many cultures. It is important to understand the mechanisms that lead people to judge others by the group to which they belong, rather than individual qualities. It was recently shown that evolutionary (imitation) dynamics can lead to a hierarchical discrimination between agents marked with observable, but otherwise meaningless, labels. These findings suggest that it can give useful insight, to describe the phenomenon of social discrimination in terms of spontaneous symmetry breaking. The investigations so far have, however, only considered binary labels. In this contribution we extend the investigations to models with up to seven different labels. We find the features known from the binary label model remain remarkably robust when the number of labels is increased. We also discover a new feature, namely that it is more likely for neighbours to have strategies which are similar, in the sense that they agree on how to act towards a subset of the labels.
description: 8 pages, 5 figures + supplement (6 pages, 8 figures)
Monocystis septum Bandyopadhyay 2009
Creators: name: Sarkar, Sutapa
name: Bandyopadhyay, Probir K.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Chromista
Miozoa
Eugregarinida
Monocystidae
Monocystis
Monocystis septum

description: 24) Monocystis septum Bandyopadhyay et al. 2009a
 Infested organ. Seminal vesicles
 Type host. Eutyphoeus orientalis
 Type locality. Murshidabad, West Bengal, India
 Description. The unique feature of the gamonts is the presence of a constriction at the anterior body end that tends to divide the cell into two parts, similarly to septate gregarines. The gamonts measure 86.3 − 102.3 (90.4±4.2) µm in length and 66.1 − 89.3 (78.2±0.9) µm in width. Nucleus rounded to ovoid, measuring 11.3 − 16.3 (14.3±1.7) µm × 8.5 − 10.6 (9.4±1.1) µm.Gametocyst consists of two gametocytes of unequal size and peculiar shape: one is axe-like, the other semicircular. The gametocyst measures 46.1 − 78.6 (64.2±1.2) µm in length and 39.7 − 68.4 (62.4±1.8) µm in width. Bi-conical oocysts measure 6.4 − 9.3 (8.2±0.9) µm in length and 5.5 − 7.6(6.1±2.1) µm in width.
description: Published as part of Sarkar, Sutapa & Bandyopadhyay, Probir K., 2013, A checklist of the species under the genus Monocystis Von Stein, 1848 (Apicomplexa: Sporozoa: Monocystidae) described from oligochaete hosts, pp. 381-388 in Zootaxa 3710 (4) on page 386, DOI: 10.11646/zootaxa.3710.4.7, http://zenodo.org/record/6164248
Additional file 3 of Dual effects of targeting S100A11 on suppressing cellular metastatic properties and sensitizing drug response in gastric cancer
Creators: name: Cui, Yuxin
name: Li, Liting
name: Li, Zhilei
name: Yin, Jie
name: Lane, Jane
name: Ji, Jiafu
name: Jiang, Wen G.
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3: Figure S3. Schematic illustration of the functions of S100A11 in gastric cancer cells.