cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
A doping-dependent switch from one- to two-component superfluidity at temperature above 100K in coupled electron-hole Van der Waals heterostructures
Creators: name: Conti, Sara
name: Van der Donck, Matthias
name: Perali, Andrea
name: Peeters, Francois M.
name: Neilson, David
Publisher: name: arXiv
Year: 2019
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The hunt for high temperature superfluidity has received new impetus from the discovery of atomically thin stable materials. Electron-hole superfluidity in coupled MoSe2-WSe2 monolayers is investigated using a mean-field multiband model that includes the band splitting caused by the strong spin-orbit coupling. The splitting leads to a large energy misalignment of the electron and hole bands which can be markedly changed by interchanging the doping of the monolayers. The choice of doping determines if the superfluidity is tuneable from one- to two-components. The electron-hole pairing is strong, with high transition temperatures in excess of 100 K.
Strobopagurus gracilipes
Creators: name: Castro, Peter
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Parapaguridae
Strobopagurus
Strobopagurus gracilipes

description: Strobopagurus gracilipes (A. Milne-Edwards, 1891)
 Sympagurus gracilipes A. Milne-Edwards, 1891: 132 [type locality: Azores; type material: status and location unknown].
 Hawaiian Is. records:
 Parapagurus gracilipes (A. Milne-Edwards, 1891) — de Saint Laurent 1972: 115 [H.I.].
 Strobopagurus gracilipes (A. Milne-Edwards, 1891) — Lemaitre 2004a: 364, figs. 1E, 3C, D, 4H, I, 5F, G, 7, 8 A–D [Kaua‘i, O‘ahu, Moloka‘i, Pailolo Channel east of Moloka‘i, Maui, Lāna‘i, Au‘au Channel east of Lāna‘i, ‘Alenuihāhā Channel east of Maui, Laysan].
 Taxonomy. Lemaitre (2004a), McLaughlin et al. (2007)
 Geographical distribution. Across Indo-West Pacific region, eastern Atlantic Ocean.
 Habitat. Subtidal to bathyal, 75–1200 m.
description: Published as part of Castro, Peter, 2011, Catalog of the anomuran and brachyuran crabs (Crustacea: Decapoda: Anomura, Brachyura) of the Hawaiian Islands 2947, pp. 1-154 in Zootaxa 2947 (1) on page 30, DOI: 10.11646/zootaxa.2947.1.1, http://zenodo.org/record/5283044
Spectral energy distributions of selfgravitating QSO discs
Creators: name: Sirko, Edwin
name: Goodman, Jeremy
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We calculate spectral energy distributions (SEDs) of steady accretion discs at high accretion rates, as appropriate for bright QSOs, under the assumption that the outer parts are heated sufficiently to maintain marginal gravitational stability, presumably by massive stars formed within the disc. The SED is independent of the nature of these auxiliary sources if their inputs are completely thermalized. Standard assumptions are made for angular momentum transport, with an alpha parameter less than unity. With these prescriptions, the luminosity of the disc is sensitive to its opacity, in contrast to standard discs powered by release of orbital energy alone. Compared to the latter, our discs have a broader SED, with a second peak in the near-infrared that is energetically comparable to the blue bump. The energy in the second peak increases with the outer radius of the disc, provided that the accretion rate is constant with radius. By comparing our computed SEDs with observed ones, we limit the outer radius of the disc to be less than 10^5 Schwarzschild radii, or about one parsec, in a typical QSO. We also discuss some properties of our minimum-Q discs in the regions where auxiliary heating is dominant (10^3-10^5 Schwarzschild radii).
description: 10 pages, 13 figures
Distinctive phenotypes and functions of innate lymphoid cells in human decidua during early pregnancy
Creators: name: Huhn, Oisín
name: Ivarsson, Martin A.
name: Gardner, Lucy
name: Hollinshead, Mike
name: Stinchcombe, Jane C
name: Chen, Puran
name: Shreeve, Norman
name: Chazara, Olympe
name: Farrell, Lydia E.
name: Theorell, Jakob
name: Ghadially, Hormas
name: Parham, Peter
name: Griffiths, Gillian
name: Horowitz, Amir
name: Moffett, Ashley
name: Sharkey, Andrew M.
name: Colucci, Francesco
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article
/631/136/3194
/631/250/2504/2506
/631/443/494
/13/31
/13/21
/49/1
article

description: Abstract: During early pregnancy, decidual innate lymphoid cells (dILCs) interact with surrounding maternal cells and invading fetal extravillous trophoblasts (EVT). Here, using mass cytometry, we characterise five main dILC subsets: decidual NK cells (dNK)1–3, ILC3s and proliferating NK cells. Following stimulation, dNK2 and dNK3 produce more chemokines than dNK1 including XCL1 which can act on both maternal dendritic cells and fetal EVT. In contrast, dNK1 express receptors including Killer-cell Immunoglobulin-like Receptors (KIR), indicating they respond to HLA class I ligands on EVT. Decidual NK have distinctive organisation and content of granules compared with peripheral blood NK cells. Acquisition of KIR correlates with higher granzyme B levels and increased chemokine production in response to KIR activation, suggesting a link between increased granule content and dNK1 responsiveness. Our analysis shows that dILCs are unique and provide specialised functions dedicated to achieving placental development and successful reproduction.
Two-tier pricing and Agenda 2000. Consequences of EU dairy policy reform for Dutch dairy farming
Creators: name: Boots, Maroeska
name: Peerlings, Jack
name: Boots, Maroeska
name: Peerlings, Jack
Publisher: name: Unknown
Year: 1999
Subjects: Agricultural and Food Policy

description: Cet article analyse les effets, pour le secteur laitier néerlandais, i) d'un système de double prix, étant donné différents niveaux des prix mondiaux, ii) d'une baisse de 15 % du prix du lait, compensée par un paiement direct et accompagnée d'une augmentation de 1,5 % des quotas, au niveau national (Agenda 2000) et iii) de la suppression des quotas. Notre analyse montre qu'en présence d'un système de double prix et d'un marché libre des quotas, la production de lait de catégorie B (valorisée au prix mondial, inférieure au prix du lait sous quota A) serait positive pour un prix du marché mondial supérieur à 0,31 NG (0,14 euro) par kilogramme. Le profit des producteurs néerlandais évoluerait alors positivement du fait de l'accroissement de la production. En revanche, dans le scénario « Agenda 2000 », les producteurs subissent une perte de profit résultant de la diminution de la rente liée au quota, par suite de la baisse du prix du lait. Le paiement direct par tonne de quota est en effet trop faible pour compenser l'effet négatif de la réduction de la rente du quota. Ces scénarios de réforme de la politique laitière communautaire sont simulés à l'aide d'un modèle micro-économétrique du secteur laitier néerlandais qui détermine les effets des changements de politique envisagés au niveau des producteurs individuels. Les résultats obtenus sont ensuite agrégés (au moyen d'un système de pondérations) au niveau du secteur laitier nationa
Repeated bond traversal probabilities for the simple random walk
Creators: name: Antal, T.
name: Hilhorst, H. J.
name: Zia, R. K. P.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We consider the average number B_m(t) of bonds traversed exactly m times by a t step simple random walk. We determine B_m(t) explicitly in the scaling limit t -> oo with m/sqrt(t) fixed in dimension d=1 and m/log(t) fixed in dimension d=2. The scaling function is an erfc in d=1 and an exponential in d=2.
description: 6 pages, 3 figures
Validating the validation: reanalyzing a large-scale comparison of deep learning and machine learning models for bioactivity prediction
Creators: name: Robinson, Matthew C.
name: Glen, Robert C.
name: Lee, Alpha A.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article

description: Abstract: Machine learning methods may have the potential to significantly accelerate drug discovery. However, the increasing rate of new methodological approaches being published in the literature raises the fundamental question of how models should be benchmarked and validated. We reanalyze the data generated by a recently published large-scale comparison of machine learning models for bioactivity prediction and arrive at a somewhat different conclusion. We show that the performance of support vector machines is competitive with that of deep learning methods. Additionally, using a series of numerical experiments, we question the relevance of area under the receiver operating characteristic curve as a metric in virtual screening. We further suggest that area under the precision–recall curve should be used in conjunction with the receiver operating characteristic curve. Our numerical experiments also highlight challenges in estimating the uncertainty in model performance via scaffold-split nested cross validation.
MOESM2 of Development and evaluation of a patient passport to promote self-management in patients with heart diseases
Creators: name: Stamm-Balderjahn, Sabine
name: Faliniski, Rebecca
name: Rossek, Susanne
name: Spyra, Karla
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Additional file 2. Original, printable version of the Kardio-Pass.
Discrete Quantum Causal Dynamics
Creators: name: Blute, R.
name: Ivanov, I. T.
name: Panangaden, P.
Publisher: name: arXiv
Year: 2001
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We give a mathematical framework to describe the evolution of an open quantum systems subjected to finitely many interactions with classical apparatuses. The systems in question may be composed of distinct, spatially separated subsystems which evolve independently but may also interact. This evolution, driven both by unitary operators and measurements, is coded in a precise mathematical structure in such a way that the crucial properties of causality, covariance and entanglement are faithfully represented. We show how our framework may be expressed using the language of (poly)categories and functors. Remarkably, important physical consequences - such as covariance - follow directly from the functoriality of our axioms. We establish strong links between the physical picture we propose and linear logic. Specifically we show that the refined logical connectives of linear logic can be used to describe the entanglements of subsystems in a precise way. Furthermore, we show that there is a precise correspondence between the evolution of a given system and deductions in a certain formal logical system based on the rules of linear logic. This framework generalizes and enriches both causal posets and the histories approach to quantum mechanics.
description: 29 pages, 8 figures
title: A Contractual Justification for Strong Measures against COVID-19
Creators: name: Ramelet, Laetitia
Publisher: name: Public Philosophy Journal
Year: 2020

description: Many countries have taken extensive measures to slow COVID-19’s progress and attempt to avert a sanitary collapse. Although the necessity of saving lives seems evident to many of us, these measures will nevertheless have dire economic effects and impose major costs on much of the population. A solid public justification is essential, for which a social contract perspective is useful. I argue that it helps us understand why such measures not only do justice to the claims of those who are likely to become severely ill, but also those of many others, and that no less is at stake than the foundational bonds of our communities.
Multi-Channel Direct Detection of Light Dark Matter: Theoretical Framework
Creators: name: Trickle, Tanner
name: Zhang, Zhengkang
name: Zurek, Kathryn M.
name: Inzani, Katherine
name: Griffin, Sinéad M.
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We present a unified theoretical framework for computing spin-independent direct detection rates via various channels relevant for sub-GeV dark matter -- nuclear recoils, electron transitions and single phonon excitations. Despite the very different physics involved, in each case the rate factorizes into the particle-level matrix element squared, and an integral over a target material- and channel-specific dynamic structure factor. We show how the dynamic structure factor can be derived in all three cases following the same procedure, and extend previous results in the literature in several aspects. For electron transitions, we incorporate directional dependence and point out potential daily modulation signals in anisotropic target materials. For single phonon excitations, we present a new derivation of the rate formula from first principles for generic spin-independent couplings, and include the first calculation of phonon excitation through electron couplings. We also discuss the interplay between single phonon excitations and nuclear recoils, and clarify the role of Umklapp processes, which can dominate the single phonon production rate for dark matter heavier than an MeV. Our results highlight the complementarity between various search channels in probing different kinematic regimes of dark matter scattering, and provide a common reference to connect dark matter theories with ongoing and future direct detection experiments.
description: 39 pages, 6 figures, minor updates to constraint projections in figures with PhonoDark v1.1.0 (https://phonodark.caltech.edu)
Additional file 10 of gCAnno: a graph-based single cell type annotation method
Creators: name: Yang, Xiaofei
name: Gao, Shenghan
name: Wang, Tingjie
name: Yang, Boyu
name: Dang, Ningxin
name: Ye, Kai
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 10: Figure S6. An example of top 2 specific genes in each cell type of liver dataset. In tSNE plot, each gene specific expressed in corresponding cell type in red color. The shade of color means the expression value.
Metadromia wilsoni
Creators: name: Castro, Peter
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Dromiidae
Metadromia
Metadromia wilsoni

description: Metadromia wilsoni (Fulton & Grant, 1902)
 Cryptodromia wilsoni Fulton & Grant, 1902: 61, pl. 9 [type locality: Victoria (Australia); syntypes: NMV J214]. Hawaiian Is. record:
 Dromia wilsoni (Fulton & Grant, 1902) — McLay 2001: 84 [Laysan].
 Taxonomy. McLay (1993, as Dromia wilsoni; 2009), Ahyong et al. (2009)
 Geographical distribution. Across Indo-West Pacific region, southern Australia and New Zealand, South Atlantic Ocean.
 Habitat. Carries sponges or colonial ascidians; intertidal, shallow subtidal to bathyal, to 520 m.
description: Published as part of Castro, Peter, 2011, Catalog of the anomuran and brachyuran crabs (Crustacea: Decapoda: Anomura, Brachyura) of the Hawaiian Islands 2947, pp. 1-154 in Zootaxa 2947 (1) on page 32, DOI: 10.11646/zootaxa.2947.1.1, http://zenodo.org/record/5283044
Uncomputability of phase diagrams
Creators: name: Bausch, Johannes
name: Cubitt, Toby S.
name: Watson, James D.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Article
/639/705/1041
/639/766/119/2795
/639/766/259
/129
article

description: Abstract: The phase diagram of a material is of central importance in describing the properties and behaviour of a condensed matter system. In this work, we prove that the task of determining the phase diagram of a many-body Hamiltonian is in general uncomputable, by explicitly constructing a continuous one-parameter family of Hamiltonians H(φ), where φ∈R, for which this is the case. The H(φ) are translationally-invariant, with nearest-neighbour couplings on a 2D spin lattice. As well as implying uncomputablity of phase diagrams, our result also proves that undecidability can hold for a set of positive measure of a Hamiltonian’s parameter space, whereas previous results only implied undecidability on a zero measure set. This brings the spectral gap undecidability results a step closer to standard condensed matter problems, where one typically studies phase diagrams of many-body models as a function of one or more continuously varying real parameters, such as magnetic field strength or pressure.
Comment on "Origin of Giant Optical Nonlinearity in Charge-Transfer--Mott Insulators: A New Paradigm for Nonlinear Optics"
Creators: name: Clay, R. T.
name: Mazumdar, S.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Comment on Phys. Rev. Lett. 86, 2086 (2001)
description: 1 page, 1 eps figure
DEPA: Self-Supervised Audio Embedding for Depression Detection
Creators: name: Zhang, Pingyue
name: Wu, Mengyue
name: Dinkel, Heinrich
name: Yu, Kai
Publisher: name: arXiv
Year: 2019
Subjects: subject: Human-Computer Interaction (cs.HC)
subject: Sound (cs.SD)
subject: Audio and Speech Processing (eess.AS)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: Depression detection research has increased over the last few decades, one major bottleneck of which is the limited data availability and representation learning. Recently, self-supervised learning has seen success in pretraining text embeddings and has been applied broadly on related tasks with sparse data, while pretrained audio embeddings based on self-supervised learning are rarely investigated. This paper proposes DEPA, a self-supervised, pretrained depression audio embedding method for depression detection. An encoder-decoder network is used to extract DEPA on in-domain depressed datasets (DAIC and MDD) and out-domain (Switchboard, Alzheimer's) datasets. With DEPA as the audio embedding extracted at response-level, a significant performance gain is achieved on downstream tasks, evaluated on both sparse datasets like DAIC and large major depression disorder dataset (MDD). This paper not only exhibits itself as a novel embedding extracting method capturing response-level representation for depression detection but more significantly, is an exploration of self-supervised learning in a specific task within audio processing.
MOESM1 of Expanded access with intravenous hydroxypropyl-β-cyclodextrin to treat children and young adults with Niemann-Pick disease type C1: a case report analysis
Creators: name: Hastings, Caroline
name: Vieira, Camilo
name: Liu, Benny
name: Bascon, Cyrus
name: Gao, Claire
name: Wang, Raymond
name: Casey, Alicia
name: Hrynkow, Sharon
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Cell Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Additional file 1. Supplemental Data: Case Summaries on Compassionate Use HPβCD to accompany the manuscript “Expanded access with intravenous hydroxypropyl-β-cyclodextrin to treat children and young adults with Niemann-Pick disease Type C1: A case report analysis”. Narratives.
Probabilistic State Propagation in Large Language Models through Recursive Token Reconfiguration
Creators: name: Fairbrother, Daniel
name: Spenser, Tobias
name: Chesham, Victor
name: Whitmore, Jasper
name: Aldenham, Harrison
name: Efrander, David
Publisher: name: Zenodo
Year: 2025

description: Structured inference processes in text generation have traditionally relied on autoregressive token prediction mechanisms, where each token is selected based on prior context without subsequent refinement. Recursive Token Reconfiguration (RTR) introduces an iterative inference strategy that enables probabilistic token realignment through recursive state propagation, ensuring that generated sequences remain dynamically responsive to evolving contextual dependencies. The experimental evaluation compared RTR-enhanced inference with conventional autoregressive decoding, assessing its impact on fluency, semantic similarity, and structural coherence across diverse textual contexts. Recursive probability adjustments contributed to reducing exposure bias effects, ensuring that earlier token predictions remained adaptable rather than statically determined. Computational analyses examined the trade-offs between enhanced coherence and increased inference latency, revealing that structured recursion improved text consistency while maintaining feasible processing constraints. Empirical findings demonstrated that recursive inference stabilized token probability distributions, ensuring that probability evolution followed systematic adjustment patterns rather than introducing stochastic variability. The probabilistic state propagation mechanism enabled token selection refinements to be guided through structured reconfiguration constraints, ensuring that modifications remained linguistically coherent rather than arbitrarily adjusted. The introduction of RTR provided a framework for structured token evolution without requiring modifications to pre-trained model parameters, ensuring that iterative inference remained computationally feasible within existing architectures.
Enhancing livestock market access for sustainable rangeland management and improved livelihoods in Kenya
Creators: name: Kihiu, Evelyne Nyathira
name: Amuakwa-Mensah, Franklin
name: Kihiu, Evelyne Nyathira
name: Amuakwa-Mensah, Franklin
Publisher: name: Unknown
Year: 2015
Subjects: subject: Crop Production/Industries
subject: Livestock Production/Industries
subject: Productivity Analysis
subject: Extensive livestock production
subject: market access
subject: ecological-economic model
subject: positive mathematical programming (PMP) model
subject: Kenya

description: Productivity of rangelands in Kenya is affected by increasing crop farming especially in more fertile range areas. This encroachment by crop farming on rangelands occurs as a response of the rural livestock producers’ to economic opportunities with the development of local and international crop markets. We hypothesize that the existing market inefficiencies characterizing livestock markets, especially the price disincentives that livestock producers face, are a major risk rangelands face. To analyze the effect of livestock market conditions on rangeland management, we draw on household survey and economic modeling tools. We find that traders’ rent seeking behavior and high transport costs act as disincentives to livestock producers’ participation in livestock markets and influence their decisions in seeking alternative rangeland uses to sustain livelihoods. However, improved livestock market access enhances livestock producers’ livelihoods and the stewardship of the ecosystems thus reducing pastoralists’ vulnerability to ecological climate variability associated with rangelands.
title: The Loss of Playfulness
Creators: name: Jones, Janet
Publisher: name: Public Philosophy Journal
Year: 2020

description: How does social distancing affect our sense of self? Our ability to create ourselves? In this article, I explore the value of interacting with strangers for our sense of self and the impact of COVID-19 safety measures on our relationships with others. Specifically, I suggest that strangers can offer us opportunities to try on new identities but that this opportunity is lost as the public realm erodes because of the COVID-19 pandemic.
MOESM1 of MicroRNA profiling in adults with high-functioning autism spectrum disorder
Creators: name: Nakata, Masatoshi
name: Kimura, Ryo
name: Funabiki, Yasuko
name: Tomonari Awaya
name: Murai, Toshiya
name: Hagiwara, Masatoshi
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 1: Table S1. Clinical characteristics of participants.
title: Community-Engaged Learning in Times of COVID-19, or, Why I'm Not Prepared to Transition My Class into an Online Environment
Creators: name: Angie Mejia
Publisher: name: Public Philosophy Journal
Year: 2020

description: In this text, I outline my attempt at restructuring a community-engaged course during a pandemic while also navigating institutional expectations that gloss over the logistical difficulties of modifying this type of curriculum. I argue community-engaged educators should bypass existing resources provided by their universities and look to what those at their discipline’s intellectual margins are providing instead. In a hurried, almost confessional tone, I also reflect on whether we can do community-engaged work during a plague; and, if so, how we can deliver educational experiences that remain centered on community building and societal transformation. I end this piece by summarizing changes to my curriculum, which run counter to what I (and possibly others) have been asked to do to meet course learning objectives. Thus, while this piece opens with a sense of doubt, it ends with a tentative sense of hope by advocating for the role of bold pedagogical movidas (moves) that could empower students to engage in new ways of being and doing community in pandemic times.
Firm Organizational and Payoff Imbalances: An Aggrievement Model with Cooperatives and Private Firms
Creators: name: Schamel, Guenter H.
name: Santos-Arteaga, Francisco J.
name: Schamel, Guenter H.
name: Santos-Arteaga, Francisco J.
Publisher: name: Unknown
Year: 2015
Subjects: subject: Agribusiness
subject: Agricultural Finance
subject: Firm Organization
subject: Behavior
subject: Cooperatives
subject: Wine.

description: Firm Organizational and Payoff Imbalances: An Aggrievement Model with Cooperatives and Private Firms
Shifts of the nuclear resonance in the vortex lattice in YBa$_2$Cu$_3$O$_7$
Creators: name: Lipavský, Pavel
name: Kolá{č}ek, Jan
name: Morawetz, Klaus
name: Brandt, Ernst Helmut
Publisher: name: arXiv
Year: 2002
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: The NMR and NQR spectra of $^{63}$Cu in the CuO$_2$ plane of YBa$_2$Cu$_3$O$_7$ in the superconducting state are discussed in terms of the phenomenological theory of Ginzburg-Landau type extended to lower temperatures. We show that the observed spectra, Kumagai {\em et al.}, PRB {\bf 63}, 144502 (2001), can be explained by a standard theory of the Bernoulli potential with the charge transfer between CuO$_2$ planes and CuO chains assumed.
description: 11 pages 7 figures
Locus coeruleus pathology in progressive supranuclear palsy, and its relation to disease severity
Creators: name: Kaalund, Sanne Simone
name: Passamonti, Luca
name: Allinson, Kieren S. J.
name: Murley, Alexander G.
name: Robbins, Trevor W.
name: Spillantini, Maria Grazia
name: Rowe, James B.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Research
Frontotemporal dementia
Locus coeruleus
Progressive supranuclear palsy
Tau
Neurodegeneration
Noradrenalin

description: Abstract: The locus coeruleus is the major source of noradrenaline to the brain and contributes to a wide range of physiological and cognitive functions including arousal, attention, autonomic control, and adaptive behaviour. Neurodegeneration and pathological aggregation of tau protein in the locus coeruleus are early features of progressive supranuclear palsy (PSP). This pathology is proposed to contribute to the clinical expression of disease, including the PSP Richardson’s syndrome. We test the hypothesis that tau pathology and neuronal loss are associated with clinical heterogeneity and severity in PSP. We used immunohistochemistry in post mortem tissues from 31 patients with a clinical diagnosis of PSP (22 with Richardson’s syndrome) and 6 control cases. We quantified the presence of hyperphosphorylated tau, the number of pigmented cells indicative of noradrenergic neurons, and the percentage of pigmented neurons with tau-positive inclusions. Ante mortem assessment of clinical severity using the PSP rating scale was available within 1.8 (±0.9) years for 23 patients. We found an average 49% reduction of pigmented neurons in PSP patients relative to controls. The loss of pigmented neurons correlated with disease severity, even after adjusting for disease duration and the interval between clinical assessment and death. The degree of neuronal loss was negatively associated with tau-positive inclusions, with an average of 44% of pigmented neurons displaying tau-inclusions. Degeneration and tau pathology in the locus coeruleus are related to clinical heterogeneity of PSP. The noradrenergic deficit in the locus coeruleus is a candidate target for pharmacological treatment. Recent developments in ultra-high field magnetic resonance imaging to quantify in vivo structural integrity of the locus coeruleus may provide biomarkers for noradrenergic experimental medicines studies in PSP.
Critical behavior of propagation on small-world networks
Creators: name: Zanette, Damian H.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We report numerical evidence that an epidemic-like model, which can be interpreted as the propagation of a rumor, exhibits critical behavior at a finite randomness of the underlying small-world network. The transition occurs between a regime where the rumor "dies" in a small neighborhood of its origin, and a regime where it spreads over a finite fraction of the whole population. Critical exponents are evaluated, and the dependence of the critical randomness with the network connectivity is studied. The behavior of this system as a function of the small-network randomness bears noticeable similarities with an epidemiological model reported recently [M. Kuperman and G. Abramson, Phys. Rev. Lett. 86, 2909 (2001)], in spite of substantial differences in the respective dynamical rules.
description: More definitive version. Text modified, 1 figure added
MOESM1 of Development and evaluation of a patient passport to promote self-management in patients with heart diseases
Creators: name: Stamm-Balderjahn, Sabine
name: Faliniski, Rebecca
name: Rossek, Susanne
name: Spyra, Karla
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Additional file 1. English translation of the questionnaire used in this study.
Autophagy regulation by acetylation—implications for neurodegenerative diseases
Creators: name: Son, Sung Min
name: Park, So Jung
name: Fernandez-Estevez, Marian
name: Rubinsztein, David C.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Review Article
/631/80/458/1275
/692/699/375/132/1283
review-article

description: Funder: UK Dementia Research Institute (funded by the MRC, Alzheimer’s Research UK and the Alzheimer’s Society) Cambridge Centre for Parkinson-Plus National Institute for Health Research Cambridge Biomedical Research Centre
description: Abstract: Posttranslational modifications of proteins, such as acetylation, are essential for the regulation of diverse physiological processes, including metabolism, development and aging. Autophagy is an evolutionarily conserved catabolic process that involves the highly regulated sequestration of intracytoplasmic contents in double-membrane vesicles called autophagosomes, which are subsequently degraded after fusing with lysosomes. The roles and mechanisms of acetylation in autophagy control have emerged only in the last few years. In this review, we describe key molecular mechanisms by which previously identified acetyltransferases and deacetylases regulate autophagy. We highlight how p300 acetyltransferase controls mTORC1 activity to regulate autophagy under starvation and refeeding conditions in many cell types. Finally, we discuss how altered acetylation may impact various neurodegenerative diseases in which many of the causative proteins are autophagy substrates. These studies highlight some of the complexities that may need to be considered by anyone aiming to perturb acetylation under these conditions.
Extended Quark Potential Model from Random Phase Approximation
Creators: name: Deng, Weizhen
name: Chen, Xiaolin
name: Lu, Dahai
name: Yang, Liming
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The quark potential model is extended to include the sea quark excitation using the random phase approximation (RPA). The effective quark interaction preserves the important Quantum Chromodynamics (QCD) properties -- chiral symmetry and confinement simultaneously. A primary qualitive analysis shows that the $π$ meson as a well-known typical Goldstone boson and the other mesons made up of valence $q\bar{q}$ quark pair such as the $ρ$ meson can also be described in this extended quark potential model.
Additional file 14 of gCAnno: a graph-based single cell type annotation method
Creators: name: Yang, Xiaofei
name: Gao, Shenghan
name: Wang, Tingjie
name: Yang, Boyu
name: Dang, Ningxin
name: Ye, Kai
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 14: Figure S8. The heatmap of each cell type specific genes expression in large dataset (top closest gene number 65). It shows an obvious pattern in diagonal.
title: Solidarity Care: How to Take Care of Each Other in Times of Struggle
Creators: name: Myisha Cherry
Publisher: name: Public Philosophy Journal
Year: 2020

description: Being aware of social injustices can cause existential and mental pain; comes with a burden; and may impede a flourishing life. However, I shall argue that this is not a reason to despair or to choose to be willfully ignorant. Rather, it’s a reason to conclude that being conscious is not enough. Rather, during times of oppression, resisters must also prioritize well-being. One way to do this is by extending what I refer to as solidarity care. I begin by providing an account of solidarity care. I then offer pragmatic ways in which one can extend solidarity care to others. I conclude by responding to two possible worries.
Tumidodromia dormia
Creators: name: Castro, Peter
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Dromiidae
Tumidodromia
Tumidodromia dormia

description: Tumidodromia dormia (Linnaeus, 1763)
 Cancer dormia Linnaeus, 1763: 413 [type locality: Indiis; type material status and location unknown].
 Hawaiian Is. records:
 Dromia hirsutissima Dana 1852b: 403 [type locality: “Sandwich Is.;” type material presumed lost].
 Dromia rumphii Weber, 1795 — Lenz 1901: 450 [O‘ahu].
 Dromia rumphii Weber, 1795 — Edmondson 1922: 33 [H.I.?].
 Dromidiopsis dormia (Linnaeus, 1763) — Edmondson 1946: 226, 268, fig. 164 [O‘ahu]. — Wiersma & Ripley 1952: 393 [O‘ahu]. — Tinker 1965: 66, 133, pl. 21 [H.I.]. — Fielding & Robinson 1987: 84, color photograph [H.I.].
 Dromia dromia [sic] (Linnaeus, 1763) — Titcomb et al. 1979: 367 [H.I.].
 Dromia dormia (Linnaeus, 1763) — Chave & Malahoff 1998: table 1 [Hawai‘i]. — Coles et al. 2001: 53 [Johnston Atoll]. — Hoover 2006: 265, color photograph [O‘ahu].
 Taxonomy. McLay (1993, as Dromia dormia; 2009), McLay & Ng (2005, as Dromia dormia), Ahyong et al.
 (2009, as Dromia dormia)
 Geographical distribution. Across Indo-West Pacific region.
 Habitat. Often carries sponges or non-living material; subtidal, 8–156 m.
description: Published as part of Castro, Peter, 2011, Catalog of the anomuran and brachyuran crabs (Crustacea: Decapoda: Anomura, Brachyura) of the Hawaiian Islands 2947, pp. 1-154 in Zootaxa 2947 (1) on page 33, DOI: 10.11646/zootaxa.2947.1.1, http://zenodo.org/record/5283044
Hot dust in normal star-forming galaxies: JHKL' photometry of the ISO Key Project sample
Creators: name: Hunt, L. K.
name: Giovanardi, C.
name: Helou, G.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present JHK and 3.8-micron photometry of 26 galaxies in the Infrared Space Observatory (ISO) Normal Galaxy Key Project (KP) sample and of seven normal ellipticals with the aim of investigating the origin of the 4-micron emission. The majority of the KP galaxies, and all the ellipticals, have K-L~1.0, corresponding to a flat or rising 4-micron continuum, consistent with significant emission from hot dust at 600-1000K. K-L is anticorrelated with ISO flux ratio F_{6.75}/F_{15}, weakly correlated with line ratio [OI]/[CII], but not with [CII]/FIR or IRAS ratio F_{60}/F_{100}. Photodissociation-region models for these galaxies show that the hot dust responsible for red K-L resides in regions of high pressure and intense far-ultraviolet radiation field. Taken together, these results suggest that star formation in normal star-forming galaxies can assume two basic forms: an ``active'', relatively rare, mode characterized by hot dust, suppressed Aromatic Features in Emission (AFEs), high pressure, and intense radiation field; and the more common ``passive'' mode that occurs under more quiescent physical conditions, with AFEs, and without hot dust. The occurrence of these modes appears to only weakly depend on the star-formation rate per unit area. Passive star formation over large scales makes up the bulk of star-forming activity locally, while the ``active'' regime may dominate at high redshifts.
description: 11 pages, 7 figures: A&A, in press (replaced 30/09/02 for error with macro)
Additional file 15 of gCAnno: a graph-based single cell type annotation method
Creators: name: Yang, Xiaofei
name: Gao, Shenghan
name: Wang, Tingjie
name: Yang, Boyu
name: Dang, Ningxin
name: Ye, Kai
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 15: Figure S9. Comparisons of gCAnno with Scmap-Cluster, Scmap-Cell, scPred, Chetah and SVM on (a) HCC and ICCA reference dropout dataset, (b) HCC and ICCA query dropout dataset, (c) AT root reference dropout dataset, (d) AT root query dropout dataset and (e) imbalance dataset.
A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis
Creators: name: Bell, Steven
name: Rigas, Andreas S.
name: Magnusson, Magnus K.
name: Ferkingstad, Egil
name: Allara, Elias
name: Bjornsdottir, Gyda
name: Ramond, Anna
name: Sørensen, Erik
name: Halldorsson, Gisli H.
name: Paul, Dirk S.
name: Burgdorf, Kristoffer S.
name: Eggertsson, Hannes P.
name: Howson, Joanna M. M.
name: Thørner, Lise W.
name: Kristmundsdottir, Snaedis
name: Astle, William J.
name: Erikstrup, Christian
name: Sigurdsson, Jon K.
name: Vuckovic, Dragana
name: Dinh, Khoa M.
name: Tragante, Vinicius
name: Surendran, Praveen
name: Pedersen, Ole B.
name: Vidarsson, Brynjar
name: Jiang, Tao
name: Paarup, Helene M.
name: Onundarson, Pall T.
name: Akbari, Parsa
name: Nielsen, Kaspar R.
name: Lund, Sigrun H.
name: Juliusson, Kristinn
name: Magnusson, Magnus I.
name: Frigge, Michael L.
name: Oddsson, Asmundur
name: Olafsson, Isleifur
name: Kaptoge, Stephen
name: Hjalgrim, Henrik
name: Runarsson, Gudmundur
name: Wood, Angela M.
name: Jonsdottir, Ingileif
name: Hansen, Thomas F.
name: Sigurdardottir, Olof
name: Stefansson, Hreinn
name: Rye, David
name: Peters, James E.
name: Westergaard, David
name: Holm, Hilma
name: Soranzo, Nicole
name: Banasik, Karina
name: Thorleifsson, Gudmar
name: Ouwehand, Willem H.
name: Thorsteinsdottir, Unnur
name: Roberts, David J.
name: Sulem, Patrick
name: Butterworth, Adam S.
name: Gudbjartsson, Daniel F.
name: Danesh, John
name: Brunak, Søren
name: Di Angelantonio, Emanuele
name: Ullum, Henrik
name: Stefansson, Kari
name: Andersen, Steffen
name: Burgdorf, Kristoffer
name: Jemec, Gregor
name: Jennum, Poul
name: Johansson, Pär
name: Nielsen, Kasper R.
name: Nyegaard, Mette
name: Petersen, Mikkel
name: Werge, Thomas
name: Stefánsson, Hreinn
name: Thorsteinsdóttir, Unnur
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Article
/631/208/457/649
/692/308/2056
/45
/45/43
article

description: Abstract: Iron is essential for many biological functions and iron deficiency and overload have major health implications. We performed a meta-analysis of three genome-wide association studies from Iceland, the UK and Denmark of blood levels of ferritin (N = 246,139), total iron binding capacity (N = 135,430), iron (N = 163,511) and transferrin saturation (N = 131,471). We found 62 independent sequence variants associating with iron homeostasis parameters at 56 loci, including 46 novel loci. Variants at DUOX2, F5, SLC11A2 and TMPRSS6 associate with iron deficiency anemia, while variants at TF, HFE, TFR2 and TMPRSS6 associate with iron overload. A HBS1L-MYB intergenic region variant associates both with increased risk of iron overload and reduced risk of iron deficiency anemia. The DUOX2 missense variant is present in 14% of the population, associates with all iron homeostasis biomarkers, and increases the risk of iron deficiency anemia by 29%. The associations implicate proteins contributing to the main physiological processes involved in iron homeostasis: iron sensing and storage, inflammation, absorption of iron from the gut, iron recycling, erythropoiesis and bleeding/menstruation.
Kinase and aldose reductase inhibitors from Chenopodium album: UPLC/T-TOF-MS/MS, in-vitro, and in- silico studies
Creators: name: Kamal, Raghda A.
name: El-Haddad, Alaadin E.
name: El-morsy, Ahmed
name: Mohamed, Hussein S.
name: Keshek, Doaa E.
name: El-Bassuony, Ashraf A.
name: Hegab, Momtaz M.
name: Kamel, Emadeldin M.
name: Ahmed, Shimaa A.
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Chenopodium album L. is commonly used in folk medicine in microbial infections, as well as gastrointestinal disorders. The metabolomic profile of C. album was studied assessed by UPLC-MS/MS and GC-MS, furthermore its in-vitro antiproliferative activity besides molecular docking on aldose reductase and kinase enzymes were evaluated. After GC-MS analysis, 18 major compounds (85.44 %) were detected, where the unsaturated FAs were found to be higher than that of saturated ones (41.26% and 23.37% respectively). Based on UPLC-MS/MS analysis, flavonols were the foremost-noticed metabolites, in particular kaempferol, quercetin, and myricetin derivatives including mono-and di-O-hexoside derivatives. The C. album extract suppressed cell proliferation in SNB-19 and K-562 cell lines (IC50 0.75±0.03 and 2.17±0.08 mg/mL respectively). These potentials were in the line with the in-silico results as kaempferol metabolites interact with the aldose reductase and kinase proteins with promising binding affinities (-5.0 to -9.16 kcal mol-1). The revealed antiproliferative activity of C. album may be justified by its content of flavonoids and phenolics; however, toxicological investigations are necessary for future clinical trials.
An ESO/VLT survey of NIR (Z<=25) selected galaxies at redshifts 4.5
Creators: name: Fontana, A.
name: Poli, F.
name: Menci, N.
name: Nonino, M.
name: Giallongo, E.
name: Cristiani, S.
name: D'Odorico, S.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present the results of a VLT and HST imaging survey aimed at the identification of 4.54.5 galaxies. The resulting integral surface density of the Z<25 candidates at z>4.5z is in the range 0.13-0.44/arcmin^2 and that in the highest redshift bin 5
description: Accepted for publication on ApJ
Cite Data. Link Data.
Creators: name: Stall, Shelley
Publisher: name: Zenodo
Year: 2021
Subjects: Linked Data
Data Sharing
Data Citation
Persistent Identifier

description: This presentation was an invited talk for the NISO Plus 2021 meeting, on 22 February in the session "Linked Data and Future of Information Sharing". Link to the Session Research data are valuable contributions to the scientific record along with papers, software, methods, and more. Understanding their connections to the progress of science is important as we continue to address the complexities of our world. Journals that cite data, include ORCIDs for authors, and connect to funding identifiers, help to build the links we need to discover how our work is connected with others in new ways. Our two expert speakers will share their views on the current state of data as a linked research output, how it continues to be recognized for its value in the scientific community, what the future brings, and what is still needed to get us there. This talk highlights work with the PARSEC project specifically the work done by our partner DataCite and the commons built to show links between researchers, research outputs, and organizations. DataCite Commons The PARSEC project is funded by the Belmont Forum, Collaborative Research Action on Science-Driven e-Infrastructures Innovation.
Dynomenidae Ortmann 1892
Creators: name: Castro, Peter
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Dynomenidae

description: Family Dynomenidae Ortmann, 1892   Subfamily Dynomeninae Ortmann, 1892
  Genus Dynomene Desmarest, 1823
description: Published as part of Castro, Peter, 2011, Catalog of the anomuran and brachyuran crabs (Crustacea: Decapoda: Anomura, Brachyura) of the Hawaiian Islands 2947, pp. 1-154 in Zootaxa 2947 (1) on page 33, DOI: 10.11646/zootaxa.2947.1.1, http://zenodo.org/record/5283044