cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 2 of Comparison of mortality and clinical failure rates between vancomycin and teicoplanin in patients with methicillin-resistant Staphylococcus aureus pneumonia
Creators: name: Lee, Jang Ho
name: Choi, Myeong Geun
name: Park, Hyung Jun
name: Kim, Ho Cheol
name: Choi, Chang-Min
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2. Primary and secondary outcomes of both groups according to the pneumonia type. CAP community-acquired pneumonia, HAP hospital-acquired pneumonia, VAP ventilator-associated pneumonia.
Multiplication operators on weighted Banach spaces of a tree
Creators: name: Allen, Robert F.
name: Sundberg, Isaac
Publisher: name: arXiv
Year: 2015
Subjects: subject: Functional Analysis (math.FA)
subject: FOS: Mathematics
subject: primary: 47B38, secondary: 05C05

description: We study multiplication operators on the weighted Banach spaces of an infinite tree. We characterize the bounded and the compact operators, as well as determine the operator norm. In addition, we determine the spectrum of the bounded multiplication operators and characterize the isometries. Finally, we study the multiplication operators between the weighted Banach spaces and the Lipschitz space by characterizing the bounded and the compact operators, determine estimates on the operator norm, and show there are no isometries.
description: Second author published under Isaac M. Craig
Isomorphic copies of $l^\infty$ in Cesàro-Orlicz function spaces
Creators: name: Kiwerski, Tomasz
name: Kolwicz, Paweł
Publisher: name: arXiv
Year: 2016
Subjects: subject: Functional Analysis (math.FA)
subject: FOS: Mathematics
subject: 46A80, 46B03, 46B20, 46B42, 46E30

description: We characterize Cesàro-Orlicz function spaces $Ces_φ$ containing isomorphic copy of $l^\infty$. We also describe the subspaces $(Ces_φ)_a$ of all order continuous elements of $Ces_φ$. Finally, we study the monotonicity structure of the spaces $Ces_φ$ and $(Ces_φ)_a$.
description: 12 pages, submitted
On Cohen-Macaulay modules over the plane curve singularity of type T_44
Creators: name: Drozd, Yuriy
name: Tovpyha, Oleksiy
Publisher: name: arXiv
Year: 2016
Subjects: subject: Commutative Algebra (math.AC)
subject: FOS: Mathematics
subject: 13C14, 13H10, 14J60

description: For a wide class of Cohen--Macaulay modules over the local ring of the plane curve singularity of type T_44 we explicitly describe the corresponding matrix factorizations. The calculations are based on the technique of matrix problems, in particular, representations of bunches of chains.
A theoretical study of the dissociative recombination of SH$^+$ with electrons through the $^2Π$ states of SH
Creators: name: Kashinski, D. O.
name: Talbi, D.
name: Hickman, A. P.
name: Di Nallo, O. E.
name: Colboc, F.
name: Chakrabarti, K.
name: Schneider, I. F.
name: Mezei, J. Zs
Publisher: name: arXiv
Year: 2024
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Atomic Physics (physics.atom-ph)
subject: FOS: Physical sciences

description: A quantitative theoretical study of the dissociative recombination of SH$^+$ with electrons has been carried out. Multireference, configuration interaction calculations were used to determine accurate potential energy curves for SH$^+$ and SH. The block diagonalization method was used to disentangle strongly interacting SH valence and Rydberg states and to construct a diabatic Hamiltonian whose diagonal matrix elements provide the diabatic potential energy curves. The off-diagonal elements are related to the electronic valence-Rydberg couplings. Cross sections and rate coefficients for the dissociative recombination reaction were calculated with a step-wise version of the multichannel quantum defect theory, using the molecular data provided by the block diagonalization method. The calculated rates are compared with the most recent measurements performed on the TSR ion storage ring in Heidelberg, Germany.
description: 17 pages, 15 figures, 4 tables
Cross-cultural Adaptation and Validation of the Arabic version of Stroke Self-Efficacy Questionnaire for Patients with Stroke
Creators: name: Almalki, Fares
name: El-Fiky, Amir
name: Almalki, Majed
name: Mahmoud, Hayam
name: Alayat, Mohamed
name: Alghamdi, Mohammed
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Medicine
subject: Environmental Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Self-efficacy has an important impact on rehabilitation outcomes in stroke. The Stroke Self-Efficacy Questionnaire assesses performance in daily functional activities and self-management following a stroke. To translate and cross-culturally adapt the Stroke Self-Efficacy Questionnaire (SSEQ) into the Arabic language and to assess its psychometric properties among patients with stroke. SSEQ was translated into Modern Arabic and then translated back into English. An expert review panel produced a pre-final version of SSEQ-AR, which was followed by a pilot test with a sample of 15 patients with stroke. The psychometric properties of the final version of the SSEQ-AR were evaluated in 135 patients with stroke. Cronbach’s alpha and ICC were calculated to describe the internal consistency and test–retest reliability, respectively. Short-Form Survey (SF-12) physical and mental subscales and Fall Efficacy Scale International were used to determine the construct validity. The total score of the SSEQ-AR and subscales showed a strong to very strong (ICC2,1 0.89–0.92), and acceptable internal consistency for two subscales (Cronbach’s alpha = 0.81 to 0.94) and total (Cronbach’s alpha = 0.93). The SSEQ-AR subscales showed a good correlation with physical component subscales of SF-12 (r = 0.64–0.72) and excellent correlation with FES-I in total (r = 0.82) and with subscales (r = 0.75–0.79). This study shows that SSEQ-AR is a reliable and valid instrument that assesses the level of self-efficacy for patients with stroke in Arabic-speaking countries
Additional file 3 of Comparison of mortality and clinical failure rates between vancomycin and teicoplanin in patients with methicillin-resistant Staphylococcus aureus pneumonia
Creators: name: Lee, Jang Ho
name: Choi, Myeong Geun
name: Park, Hyung Jun
name: Kim, Ho Cheol
name: Choi, Chang-Min
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3. Primary and secondary outcomes of the low-dose and high-dose teicoplanin groups. We performed the subgroup analysis between the low-dose and high-dose teicoplanin groups. There was no difference of treatment outcome between the two groups. Additionally, we performed univariate and multivariate analysis with Cox proportional hazard model. All covariates included in Table 3 were included. High-dose teicoplanin presented an odds ratio of 0.649 (95% confidence interval 0.295–1.429, p = 0.283) in univariate analysis and 0.641 (95% confidence interval 0.243–1.690, p = 0.369) in multivariate analysis.
Brief an Matthias Erb
Creators: name: Taurus, Sigismund
Publisher: name: [s.n.]
Year: 1547

description: von [Sigismund] Taurus
description: Öffentliche Bibliothek der Universität Basel
description: Lateinisch
description: Verzeichnung=Description=Inventaire Januar 2018 HAN-Katalogisierungsregeln Vollständige Rekatalogisierung nach Standortverzeichnis, Briefkatalog und Original
Isometric copies of $l^\infty$ in Cesàro-Orlicz function spaces
Creators: name: Kiwerski, Tomasz
name: Kolwicz, Paweł
Publisher: name: arXiv
Year: 2017
Subjects: subject: Functional Analysis (math.FA)
subject: FOS: Mathematics

description: We characterize Cesàro-Orlicz function spaces $Ces_φ$ containing order isomorphically isometric copy of $l^\infty$. We discuss also some useful applicable conditions sufficient for the existence of such a copy.
description: 16 pages. arXiv admin note: text overlap with arXiv:1604.07257
Local approach to order continuity in Cesàro function spaces
Creators: name: Kiwerski, Tomasz
name: Tomaszewski, Jakub
Publisher: name: arXiv
Year: 2017
Subjects: subject: Functional Analysis (math.FA)
subject: FOS: Mathematics

description: The goal of this paper is to present a complete characterisation of points of order continuity in abstract Cesàro function spaces $CX$ for $X$ being a symmetric function space. Under some additional assumptions mentioned result takes the form $(CX)_a = C(X_a)$. We also find simple equivalent condition for this equality which in the case of $I=[0,1]$ comes to $X\neq L^\infty$. Furthermore, we prove that $X$ is order continuous if and only if $CX$ is, under assumption that the Cesàro operator is bounded on $X$. This result is applied to particular spaces, namely: Cesàro-Orlicz function spaces, Cesàro-Lorentz function spaces and Cesàro-Marcinkiewicz function spaces to get criteria for OC-points.
description: 18 pages
Brief an Matthias Erb
Creators: name: Taurus, Sigismund
Publisher: name: [s.n.]
Year: 1549

description: von S[igismund] Taurus
description: Öffentliche Bibliothek der Universität Basel
description: Lateinisch
description: Verzeichnung=Description=Inventaire Januar 2018 HAN-Katalogisierungsregeln Vollständige Rekatalogisierung nach Standortverzeichnis, Briefkatalog und Original
Affine logic for constructive mathematics
Creators: name: Shulman, Michael
Publisher: name: arXiv
Year: 2018
Subjects: subject: Logic (math.LO)
subject: FOS: Mathematics

description: We show that numerous distinctive concepts of constructive mathematics arise automatically from an "antithesis" translation of affine logic into intuitionistic logic via a Chu/Dialectica construction. This includes apartness relations, complemented subsets, anti-subgroups and anti-ideals, strict and non-strict order pairs, cut-valued metrics, and apartness spaces. We also explain the constructive bifurcation of some classical concepts using the choice between multiplicative and additive affine connectives. Affine logic and the antithesis construction thus systematically "constructivize" classical definitions, handling the resulting bookkeeping automatically.
description: 51 pages. v2: More general and precise treatment of semantics, using categories instead of posets, and hyperdoctrines and comprehension instead of triposes. Changed name to "antithesis translation" and more properly emphasized "affine" over "linear". v3-4: minor fixes; final version to appear in BSL
Brief an Matthias Erb
Creators: name: Taurus, Sigismund
Publisher: name: [s.n.]
Year: 1550

description: von [Sigismund] Taurus
description: Öffentliche Bibliothek der Universität Basel
description: Lateinisch
description: Verzeichnung=Description=Inventaire Januar 2018 HAN-Katalogisierungsregeln Vollständige Rekatalogisierung nach Standortverzeichnis, Briefkatalog und Original
Morse-Bott functions on orthogonal groups
Creators: name: Bozma, H. Işıl
name: Gillam, William D.
name: Öztürk, Ferit
Publisher: name: arXiv
Year: 2018
Subjects: subject: Geometric Topology (math.GT)
subject: FOS: Mathematics

description: We make a detailed study of various (quadratic and linear) Morse-Bott trace functions on the orthogonal groups $O(n)$. We describe the critical loci of the quadratic trace function Tr$(AXBX^T)$ and determine their indices via perfect fillings of tables associated with the multiplicities of the eigenvalues of $A$ and $B$. We give a simplified treatment of T. Frankel's analysis of the linear trace function on $SO(n)$, as well as a combinatorial explanation of the relationship between the mod $2$ Betti numbers of $SO(n)$ and those of the Grassmannians $\mathbb{G}(2k,n)$ obtained from this analysis. We review the basic notions of Morse-Bott cohomology in a simple case where the set of critical points has two connected components. We then use these results to give a new Morse-theoretic computation of the mod $2$ Betti numbers of $SO(n)$.
description: 28 pages
Additional file 1 of Intravenous IgM-enriched immunoglobulins in critical COVID-19: a multicentre propensity-weighted cohort study
Creators: name: Rahmel, Tim
name: Kraft, Felix
name: Haberl, Helge
name: Achtzehn, Ute
name: Brandenburger, Timo
name: Neb, Holger
name: Jarczak, Dominik
name: Dietrich, Maximilian
name: Magunia, Harry
name: Zimmer, Frieda
name: Basten, Jale
name: Landgraf, Claudia
name: Koch, Thea
name: Zacharowski, Kai
name: Weigand, Markus A.
name: Rosenberger, Peter
name: Ullrich, Roman
name: Meybohm, Patrick
name: Nierhaus, Axel
name: Kindgen-Milles, Detlef
name: Timmesfeld, Nina
name: Adamzik, Michael
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Cell Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Science Policy

description: Additional file 1 Additional results on primary outcome (30-day mortality) by using different statistical methods for bias control.
On the semiclassical Laplacian with magnetic field having self-intersecting zero set
Creators: name: Dauge, Monique
name: Miqueu, Jean-Philippe
name: Raymond, Nicolas
Publisher: name: arXiv
Year: 2018
Subjects: subject: Analysis of PDEs (math.AP)
subject: Mathematical Physics (math-ph)
subject: Numerical Analysis (math.NA)
subject: FOS: Mathematics
subject: FOS: Physical sciences

description: This paper is devoted to the spectral analysis of the Neumann realization of the 2D magnetic Laplacian with semiclassical parameter h > 0 in the case when the magnetic field vanishes along a smooth curve which crosses itself inside a bounded domain. We investigate the behavior of its eigenpairs in the limit h $\rightarrow$ 0. We show that each crossing point acts as a potential well, generating a new decay scale of h 3/2 for the lowest eigenvalues, as well as exponential concentration for eigenvectors around the set of crossing points. These properties are consequences of the nature of associated model problems in R 2 for which the zero set of the magnetic field is the union of two straight lines. In this paper we also analyze the spectrum of model problems when the angle between the two straight lines tends to 0.
Activity Instructions and Data Collection Instruments - Teaching Scrum Principles in a Playful Way through Distant Collaboration with Online Whiteboards
Creators: name: Gama, Kiev
name: Oliveira, Higor
Publisher: name: figshare
Year: 2022
Subjects: subject: 80309 Software Engineering
subject: FOS: Computer and information sciences

description: These are supplementary files for the article "An Experience Report on Teaching Scrum Principles in a Playful Way through Distant Collaboration with Online Whiteboards" published at the Educations Track of SBES'22 (36th Brazilian Symposium on Software Engineering)
Agenamyia fumipennis Albuquerque 1953
Creators: name: Carvalho, Claudio José Barros De
name: Wolff, Marta
name: Haseyama, Kirstern Lica Follmann
name: Fogaça, João Manuel
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Muscidae
Agenamyia
Agenamyia fumipennis

description: Agenamyia fumipennis Albuquerque, 1953
(Figs. 6A–D, 7A–G, 14A, D)
Agenamyia fumipennis Albuquerque, 1953: 519.
Diagnosis. This species can be easily distinguished from other species of the genus by the following characteristics: syntergite 1+2 translucid and hind femur with two strong apical av setae.
Redescription. Male. Dark brown fronto-orbital plate with 3 setulae (Fig. 6B). Parafacial with silver pruinosity (Fig. 6B). Brown palpus with lighter base (Fig. 6B). Dark brown antennae with lighter pedicel (Fig. 6B). Dark brown arista.
Thorax. Dark brown mesonotum with two slightly distinct median grey stripes. Dorsocentrals 1+3, first postsutural smaller than the others (Fig. 6C). One postsutural intra-alar seta. Katepisternals 1+1+1, not forming an equilateral triangle, anterior seta smaller than the remaining setae (Fig. 6A).
Wings. Smoky, but lighter at the base (Figs. 6A, 6C). Dark brown veins. Whitish and hyaline calypteres (Fig. 6C). The lower calypter is twice as long as the upper calypter.
Legs. Yellowish. Femora with brownish tip. Fore tibia with a row of apical pv setae. Hind tibia with 2 apical av setae.
Abdomen. Dark brown, syntergites 1+2 translucid (Fig. 6C). Sternite 5 with several apical setae (Fig. 7E; Albuquerque, 1953: fig. 12).
Terminalia.Cercus divided into two parts,longer than wide, with several setulae at the base (Fig.7D; Albuquerque, 1953: fig. 8). Surstylus shorter than cercus in length (Fig. 7D; Albuquerque, 1953: fig. 8). The phallapodeme is larger at the tip (Fig. 7C; Albuquerque, 1953: fig. 11). Rectangular distiphallus with membranous apex (Fig. 7C; Albuquerque, 1953: fig. 11).
Female. Unknown.
Material examined: Holotype ♁, Rio de Janeiro, Gávea, 16.xi.1936, Hugo Souza Lopes col. (MNRJ).
Additional material examined. BRAZIL, Pernambuco, Bonito, Pedra Redonda, Rio Verdinho, 02.viii.2009, Bandy, 1 ♁ (MZUFBA).
Remarks. The holotype is in poor condition with the head glued to the label, and some legs are missing (Figs. 6A–C). The right wing is broken (Fig. 6C) but is glued to a slide (Fig. 7B).
Distribution. Rio de Janeiro and Pernambuco (new record), Brazil.
Biology. Unknown.
description: Published as part of Carvalho, Claudio José Barros De, Wolff, Marta, Haseyama, Kirstern Lica Follmann & Fogaça, João Manuel, 2023, Review of the endemic Neotropical genus Agenamyia Albuquerque (Diptera: Muscidae) with the description of new species from South America, pp. 532-550 in Zootaxa 5346 (5) on pages 540-541, DOI: 10.11646/zootaxa.5346.5.2, http://zenodo.org/record/8390725
Harnessing Avidity: Quantifying Entropic and Energetic Effects of Linker Length and Rigidity Required for Multivalent Binding of Antibodies to HIV-1 Spikes
Creators: name: Einav, Tal
name: Yazdi, Shahrzad
name: Coey, Aaron
name: Bjorkman, Pamela J.
name: Phillips, Rob
Publisher: name: arXiv
Year: 2018
Subjects: subject: Biomolecules (q-bio.BM)
subject: FOS: Biological sciences

description: Due to the low density of envelope (Env) spikes on the surface of HIV-1, neutralizing IgG antibodies rarely bind bivalently using both antigen-binding arms (Fabs) to crosslink between spikes (inter-spike crosslinking), instead resorting to weaker monovalent binding that is more sensitive to Env mutations. Synthetic antibodies designed to bivalently bind a single Env trimer (intra-spike crosslinking) were previously shown to exhibit increased neutralization potencies. In initial work, diFabs joined by varying lengths of rigid double-stranded DNA (dsDNA) were considered. Anticipating future experiments to improve synthetic antibodies, we investigate whether linkers with different rigidities could enhance diFab potency by modeling DNA-Fabs containing different combinations of rigid dsDNA and flexible single-stranded DNA (ssDNA) and characterizing their neutralization potential. Model predictions suggest that while a long flexible polymer may be capable of bivalent binding, it exhibits weak neutralization due to the large loss in entropic degrees of freedom when both Fabs are bound. In contrast, the strongest neutralization potencies are predicted to require a rigid linker that optimally spans the distance between two Fab binding sites on an Env trimer, and avidity can be further boosted by incorporating more Fabs into these constructs. These results inform the design of multivalent anti-HIV-1 therapeutics that utilize avidity effects to remain potent against HIV-1 in the face of the rapid mutation of Env spikes.
Sonnenfleckenzeichnung Nr. 4768.
Zeichnung von Flecken und Fackelflächen zur Ermittlung der Sonnenaktivität am 17.12.1954, erstellt als Beobachtung im Projektionsverfahren Nr. 2834 von Karl Rapp in Locarno-Monti
Creators: name: [s.n.]
Publisher: name: [s.n.]
Year: 1954

description: Bleistiftzeichnung mit Tinte und Farbstift, erstellt für die Beobachtungen in Locarno-Monti auf dem Vordruck der Eidgenössischen Sternwarte Zürich. Instrument: Merz-Refraktor mit 13.5 cm Öffnung und 195 cm Brennweite, vereinzelt andere Instrumente wie Tel. 88x; Sonnenbild D = 25 cm. - Auf der Zeichnung wird zum Teil das Instrument vermerkt bzw. die Zählung der Beobachtungen im Projektionsverfahren fortgesetzt. Sporadisch sind Resultate mehrerer Aufnahmen pro Tag aufgelistet. Zuhanden der späteren statistischen Verarbeitung sind die Angaben für die Bestimmung der Fleckenrelativzahl notiert.
Zeichnung aus der Zeit der Beobachtertätigkeit von Ing. Karl Rapp als Privat-Astronom, die er seit den Neunzehnvierziger Jahren für die Eidgenössische Sternwarte Zürich ausführte. Aus den ersten zwei Jahren der freiwilligen Mitarbeit sind nur einzelne Stücke überliefert. Erst zwei Jahre später ist jeweils eine ergänzende Serie in Zürich aufbewahrt worden. Nochmals fünf Jahre später arbeitete Karl Rapp neu auf vertraglicher Basis weiter mit, bis schliesslich nach einem weiteren Jahrzehnt die permanente Beobachtungsstation in Locarno-Monti geschaffen wurde, welche an die langjährige Serie von Karl Rapp anknüpfte
Additional file 2 of Intravenous IgM-enriched immunoglobulins in critical COVID-19: a multicentre propensity-weighted cohort study
Creators: name: Rahmel, Tim
name: Kraft, Felix
name: Haberl, Helge
name: Achtzehn, Ute
name: Brandenburger, Timo
name: Neb, Holger
name: Jarczak, Dominik
name: Dietrich, Maximilian
name: Magunia, Harry
name: Zimmer, Frieda
name: Basten, Jale
name: Landgraf, Claudia
name: Koch, Thea
name: Zacharowski, Kai
name: Weigand, Markus A.
name: Rosenberger, Peter
name: Ullrich, Roman
name: Meybohm, Patrick
name: Nierhaus, Axel
name: Kindgen-Milles, Detlef
name: Timmesfeld, Nina
name: Adamzik, Michael
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Cell Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Science Policy

description: Additional file 2 Covariates included in the models.
Sonnenfleckenzeichnung Nr. 91.
Zeichnung von Flecken und Fackelflächen zur Ermittlung der Sonnenaktivität am 21.04.1968, erstellt von Araldo Pittini, Sonnenobservatorium Specola Solare Ticinese in Locarno
Creators: name: [s.n.]
Publisher: name: [s.n.]
Year: 1968

description: Bleistiftzeichnung mit Tinte und Farbstift, erstellt als Projektionsbildzeichnung für die Beobachtungen in Locarno-Monti auf dem Vordruck der Eidgenössischen Sternwarte Zürich. Instrument: Zeiss-Coudé-Refraktor mit 15 cm Öffnung und 225 cm Brennweite.
Die Beobachtungen zu Einzelflecken und zu Sonnenfleckengruppen wurden auf dem Vordruck eingetragen. Zusätzlich sind zuhanden der späteren statistischen Verarbeitung die Angaben für die Bestimmung der Fleckenrelativzahl notiert
Anqie entropy and arithmetic compactification of natural numbers
Creators: name: Wei, Fei
Publisher: name: arXiv
Year: 2018
Subjects: subject: Number Theory (math.NT)
subject: FOS: Mathematics
subject: 37A35, 37A44, 46J10, 37A55

description: To study arithmetic structures of natural numbers, we introduce a notion of entropy of arithmetic functions, called anqie entropy. This entropy possesses some crucial properties common to both Shannon's and Kolmogorov's entropies. We show that all arithmetic functions with zero anqie entropy form a C*-algebra. Its maximal ideal space defines our arithmetic compactification of natural numbers, which is totally disconnected but not extremely disconnected. We also compute the $K$-groups of the space of all continuous functions on the arithmetic compactification. As an application, we show that any topological dynamical system with topological entropy $λ$, can be approximated by symbolic dynamical systems with entropy less than or equal to $λ$.
description: 28 pages
Additional file 3 of Intravenous IgM-enriched immunoglobulins in critical COVID-19: a multicentre propensity-weighted cohort study
Creators: name: Rahmel, Tim
name: Kraft, Felix
name: Haberl, Helge
name: Achtzehn, Ute
name: Brandenburger, Timo
name: Neb, Holger
name: Jarczak, Dominik
name: Dietrich, Maximilian
name: Magunia, Harry
name: Zimmer, Frieda
name: Basten, Jale
name: Landgraf, Claudia
name: Koch, Thea
name: Zacharowski, Kai
name: Weigand, Markus A.
name: Rosenberger, Peter
name: Ullrich, Roman
name: Meybohm, Patrick
name: Nierhaus, Axel
name: Kindgen-Milles, Detlef
name: Timmesfeld, Nina
name: Adamzik, Michael
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Cell Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Science Policy

description: Additional file 3 Baseline characteristics of investigated subgroups.
Wonderful asymptotics of matrix coefficient D-modules
Creators: name: Ben-Zvi, David
name: Ganev, Iordan
Publisher: name: arXiv
Year: 2019
Subjects: subject: Representation Theory (math.RT)
subject: FOS: Mathematics

description: Beilinson-Bernstein localization realizes representations of complex reductive Lie algebras as monodromic $D$-modules on the "basic affine space" $G/N$, a torus bundle over the flag variety. A doubled version of the same space appears as the horocycle space describing the geometry of the reductive group $G$ at infinity, near the closed stratum of the wonderful compactification $\overline{G}$, or equivalently in the special fiber of the Vinberg semigroup of $G$. We show that Beilinson-Bernstein localization for $U\mathfrak g$-bimodules arises naturally as the specialization at infinity in $\overline{G}$ of the $D$-modules on $G$ describing matrix coefficients of Lie algebra representations. More generally, the asymptotics of matrix coefficient $D$-modules along any stratum of $\overline{G}$ are given by the matrix coefficient $D$-modules for parabolic restrictions. This provides a simple algebraic derivation of the relation between growth of matrix coefficients of admissible representations and $\mathfrak n$-homology. The result is an elementary consequence of the compatibility of localization with the degeneration of affine $G$-varieties to their asymptotic cones; analogous results hold for the asymptotics of the equations describing spherical functions on symmetric spaces.
description: 41 pages. To appear in Advances in Mathematics
Brief an Matthias Erb
Creators: name: Taurus, Sigismund
Publisher: name: [s.n.]
Year: 1547

description: von Sigis[mund] Taurus
description: Öffentliche Bibliothek der Universität Basel
description: Lateinisch
description: Verzeichnung=Description=Inventaire Januar 2018 HAN-Katalogisierungsregeln Vollständige Rekatalogisierung nach Standortverzeichnis, Briefkatalog und Original
On the speed of convergence to the asymptotic cone for non-singular nilpotent groups
Creators: name: Tashiro, Kenshiro
Publisher: name: arXiv
Year: 2019
Subjects: subject: Group Theory (math.GR)
subject: FOS: Mathematics

description: We study the speed of convergence to the asymptotic cone for Cayley graphs of nilpotent groups. Burago showed that $\{(\mathbb{Z}^d, \frac{1}{n} ρ,id)\}_{n\in\mathbb{N}}$ converges to $(\mathbb{R}^d,d_{\infty},id)$ and its speed is $O(\frac{1}{n})$ in the sense of Gromov-Hausdorff distance. Later Breuillard and Le Donne gave estimates for non-abelian cases, and constructed an example whose speed of convergence is slower than $O(\frac{1}{\sqrt{n}})$. For $2$-step nilpotent groups, we show that if the Mal'cev completion is non-singular, then the speed of convergence is $O(\frac{1}{n})$ for any choice of generating set. In terms of subFinsler geometry, this condition is also equivalent to the absence of abnormal geodesics on the asymptotic cone.
description: 18pages,11 figures
Brief an Matthias Erb
Creators: name: Taurus, Sigismund
Publisher: name: [s.n.]
Year: 1494

description: von S[igismund] Taurus
description: Öffentliche Bibliothek der Universität Basel
description: Lateinisch
description: Verzeichnung=Description=Inventaire Januar 2018 HAN-Katalogisierungsregeln Vollständige Rekatalogisierung nach Standortverzeichnis, Briefkatalog und Original
The Energetics of Molecular Adaptation in Transcriptional Regulation
Creators: name: Chure, Griffin
name: Razo-Mejia, Manuel
name: Belliveau, Nathan M.
name: Einav, Tal
name: Kaczmarek, Zofii
name: Barnes, Stephanie L.
name: Lewis, Mitchell
name: Phillips, Rob
Publisher: name: arXiv
Year: 2019
Subjects: subject: Genomics (q-bio.GN)
subject: Molecular Networks (q-bio.MN)
subject: Populations and Evolution (q-bio.PE)
subject: FOS: Biological sciences

description: Mutation is a critical mechanism by which evolution explores the functional landscape of proteins. Despite our ability to experimentally inflict mutations at will, it remains difficult to link sequence-level perturbations to systems-level responses. Here, we present a framework centered on measuring changes in the free energy of the system to link individual mutations in an allosteric transcriptional repressor to the parameters which govern its response. We find the energetic effects of the mutations can be categorized into several classes which have characteristic curves as a function of the inducer concentration. We experimentally test these diagnostic predictions using the well-characterized LacI repressor of Escherichia coli, probing several mutations in the DNA binding and inducer binding domains. We find that the change in gene expression due to a point mutation can be captured by modifying only a subset of the model parameters that describe the respective domain of the wild-type protein. These parameters appear to be insulated, with mutations in the DNA binding domain altering only the DNA affinity and those in the inducer binding domain altering only the allosteric parameters. Changing these subsets of parameters tunes the free energy of the system in a way that is concordant with theoretical expectations. Finally, we show that the induction profiles and resulting free energies associated with pairwise double mutants can be predicted with quantitative accuracy given knowledge of the single mutants, providing an avenue for identifying and quantifying epistatic interactions.
description: 11 pages, 6 figures, supplemental info. available via http://rpgroup.caltech.edu/mwc_mutants
Isomorphic and isometric structure of the optimal domains for Hardy-type operators
Creators: name: Kiwerski, Tomasz
name: Kolwicz, Paweł
name: Maligranda, Lech
Publisher: name: arXiv
Year: 2019
Subjects: subject: Functional Analysis (math.FA)
subject: FOS: Mathematics

description: We investigate structure of the optimal domains for the Hardy-type operators including, for example, the classical Cesàro, Copson and Volterra operators as well as for some of their generalizations. We prove that, in some sense, the abstract Cesàro and Copson function spaces are closely related to the space $L^1$, namely, they contain "in the middle" a complemented copy of $L^1[0,1]$, asymptotically isometric copy of $\ell^1$ and also can be renormed to contain an isometric copy of $L^1[0,1]$. Moreover, the generalized Tandori function spaces are quite similar to $L^\infty$ because they contain an isometric copy of $\ell^\infty$ and can be renormed to contain an isometric copy of $L^\infty[0,1]$. Several applications to the metric fixed point theory will be given. Next, we prove that the Cesàro construction $X \mapsto CX$ does not commutate with the truncation operation of the measure space support. We also study whether a given property transfers between a Banach function space $X$ and the space $TX$, where $T$ is the Cesàro or the Copson operator. In particular, we find a large class of properties which do not lift from $TX$ into $X$ and prove that the abstract Cesàro and Copson function spaces are never reflexive, are not isomorphic to a dual space and do not have the Radon--Nikodym property in general.
description: 34 pages; we changed the title and added some corrections compared to the first version
Sonnenfleckenzeichnung Nr. 4641.
Zeichnung von Flecken und Fackelflächen zur Ermittlung der Sonnenaktivität am 26.07.1954, erstellt als Beobachtung im Projektionsverfahren Nr. 2710 von Karl Rapp in Locarno-Monti
Creators: name: [s.n.]
Publisher: name: [s.n.]
Year: 1954

description: Bleistiftzeichnung mit Tinte und Farbstift, erstellt für die Beobachtungen in Locarno-Monti auf dem Vordruck der Eidgenössischen Sternwarte Zürich. Instrument: Merz-Refraktor mit 13.5 cm Öffnung und 195 cm Brennweite, vereinzelt andere Instrumente wie Tel. 88x; Sonnenbild D = 25 cm. - Auf der Zeichnung wird zum Teil das Instrument vermerkt bzw. die Zählung der Beobachtungen im Projektionsverfahren fortgesetzt. Sporadisch sind Resultate mehrerer Aufnahmen pro Tag aufgelistet. Zuhanden der späteren statistischen Verarbeitung sind die Angaben für die Bestimmung der Fleckenrelativzahl notiert.
Zeichnung aus der Zeit der Beobachtertätigkeit von Ing. Karl Rapp als Privat-Astronom, die er seit den Neunzehnvierziger Jahren für die Eidgenössische Sternwarte Zürich ausführte. Aus den ersten zwei Jahren der freiwilligen Mitarbeit sind nur einzelne Stücke überliefert. Erst zwei Jahre später ist jeweils eine ergänzende Serie in Zürich aufbewahrt worden. Nochmals fünf Jahre später arbeitete Karl Rapp neu auf vertraglicher Basis weiter mit, bis schliesslich nach einem weiteren Jahrzehnt die permanente Beobachtungsstation in Locarno-Monti geschaffen wurde, welche an die langjährige Serie von Karl Rapp anknüpfte
Bayesian Hierarchical Factor Regression Models to Infer Cause of Death From Verbal Autopsy Data
Creators: name: Moran, Kelly R.
name: Turner, Elizabeth L.
name: Dunson, David
name: Herring, Amy H.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Applications (stat.AP)
subject: FOS: Computer and information sciences

description: In low-resource settings where vital registration of death is not routine it is often of critical interest to determine and study the cause of death (COD) for individuals and the cause-specific mortality fraction (CSMF) for populations. Post-mortem autopsies, considered the gold standard for COD assignment, are often difficult or impossible to implement due to deaths occurring outside the hospital, expense, and/or cultural norms. For this reason, Verbal Autopsies (VAs) are commonly conducted, consisting of a questionnaire administered to next of kin recording demographic information, known medical conditions, symptoms, and other factors for the decedent. This article proposes a novel class of hierarchical factor regression models that avoid restrictive assumptions of standard methods, allow both the mean and covariance to vary with COD category, and can include covariate information on the decedent, region, or events surrounding death. Taking a Bayesian approach to inference, this work develops an MCMC algorithm and validates the FActor Regression for Verbal Autopsy (FARVA) model in simulation experiments. An application of FARVA to real VA data shows improved goodness-of-fit and better predictive performance in inferring COD and CSMF over competing methods. Code and a user manual are made available at https://github.com/kelrenmor/farva.
Additional file 1 of The value of repeat kidney biopsy during an atypical course of membranous nephropathy
Creators: name: Ahmed, Sumaiya
name: Massicotte-Azarniouch, David
name: Canney, Mark
name: Booth, Clare
name: Blanco, Paula
name: Hundemer, Gregory L.
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Marine Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 1.
Birational geometry for the covering of a nilpotent orbit closure II
Creators: name: Namikawa, Yoshinori
Publisher: name: arXiv
Year: 2019
Subjects: subject: Algebraic Geometry (math.AG)
subject: Representation Theory (math.RT)
subject: FOS: Mathematics
subject: 14E15, 17B08

description: Let $O$ be a nilpotent orbit of a complex semisimple Lie algebra $\mathfrak{g}$ and let $π: X \to \bar{O}$ be the finite covering associated with the universal covering of $O$. In the previous article we have explicitly constructed a $\mathbf{Q}$-factorial terminalization $\tilde{X}$ of $X$ when $\mathfrak{g}$ is classical. In the present article, we count how many different $\mathbf{Q}$-factorial terminalizations $X$ has. We construct the universal Poisson deformation of $\tilde{X}$ over $H^2(\tilde{X}, \mathbf{C})$ and look at the action of the Weyl group $W(X)$ on $H^2(\tilde{X}, \mathbf{C})$. The main result is an explicit geometric description of $W(X)$.
description: 39 pages, accepted version
Brief an Matthias Erb
Creators: name: Taurus, Sigismund
Publisher: name: [s.n.]
Year: 1547

description: von S[igismund] Taurus
description: Öffentliche Bibliothek der Universität Basel
description: Lateinisch
description: Verzeichnung=Description=Inventaire Januar 2018 HAN-Katalogisierungsregeln Vollständige Rekatalogisierung nach Standortverzeichnis, Briefkatalog und Original
Bayesian joint modeling of chemical structure and dose response curves
Creators: name: Moran, Kelly R.
name: Dunson, David
name: Wheeler, Matthew W.
name: Herring, Amy H.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Applications (stat.AP)
subject: FOS: Computer and information sciences

description: Today there are approximately 85,000 chemicals regulated under the Toxic Substances Control Act, with around 2,000 new chemicals introduced each year. It is impossible to screen all of these chemicals for potential toxic effects either via full organism in vivo studies or in vitro high-throughput screening (HTS) programs. Toxicologists face the challenge of choosing which chemicals to screen, and predicting the toxicity of as-yet-unscreened chemicals. Our goal is to describe how variation in chemical structure relates to variation in toxicological response to enable in silico toxicity characterization designed to meet both of these challenges. With our Bayesian partially Supervised Sparse and Smooth Factor Analysis ($\text{BS}^3\text{FA}$) model, we learn a distance between chemicals targeted to toxicity, rather than one based on molecular structure alone. Our model also enables the prediction of chemical dose-response profiles based on chemical structure (that is, without in vivo or in vitro testing) by taking advantage of a large database of chemicals that have already been tested for toxicity in HTS programs. We show superior simulation performance in distance learning and modest to large gains in predictive ability compared to existing methods. Results from the high-throughput screening data application elucidate the relationship between chemical structure and a toxicity-relevant high-throughput assay. An R package for $\text{BS}^3\text{FA}$ is available online at https://github.com/kelrenmor/bs3fa.
Academic integrity at doctoral level: the influence of the imposter phenomenon and cultural differences on academic writing
Creators: name: Cutri, Jennifer
name: Abraham, Amarpreet
name: Karlina, Yeni
name: Patel, Sweta Vijaykumar
name: Moharami, Mehdi
name: Zeng, Shaoru
name: Manzari, Elham
name: Pretorius, Lynette
Publisher: name: Monash University
Year: 2021
Subjects: classificationCode: 390303
subject: Higher education

description: This conceptual review seeks to reframe the view of academic integrity as something to be enforced to an academic skill that needs to be developed. The authors highlight how practices within academia create an environment where feelings of inadequacy thrive, leading to behaviours of unintentional academic misconduct. Importantly, this review includes practical suggestions to help educators and higher education institutions support doctoral students’ academic integrity skills. In particular, the authors highlight the importance of explicit academic integrity instruction, support for the development of academic literacy skills, and changes in supervisory practices that encourage student and supervisor reflexivity. Therefore, this review argues that, through the use of these practical strategies, academia can become a space where a culture of academic integrity can flourish.
Brief an Matthias Erb
Creators: name: Taurus, Sigismund
Publisher: name: [s.n.]
Year: 1494

description: von [Sigismund] Taurus
description: Öffentliche Bibliothek der Universität Basel
description: Lateinisch
description: Verzeichnung=Description=Inventaire Januar 2018 HAN-Katalogisierungsregeln Vollständige Rekatalogisierung nach Standortverzeichnis, Briefkatalog und Original
The Obelisk simulation: galaxies contribute more than AGN to HI reionization of protoclusters
Creators: name: Trebitsch, Maxime
name: Dubois, Yohan
name: Volonteri, Marta
name: Pfister, Hugo
name: Cadiou, Corentin
name: Katz, Harley
name: Rosdahl, Joakim
name: Kimm, Taysun
name: Pichon, Christophe
name: Beckmann, Ricarda S.
name: Devriendt, Julien
name: Slyz, Adrianne
Publisher: name: arXiv
Year: 2020
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We present the Obelisk project, a cosmological radiation-hydrodynamics simulation following the assembly and reionization of a protocluster progenitor during the first two billions of years from the big bang, down to $z = 3.5$. The simulation resolves haloes down to the atomic cooling limit, and tracks the contribution of different sources of ionization: stars, active galactic nuclei, and collisions. The Obelisk project is designed specifically to study the coevolution of high redshift galaxies and quasars in an environment favouring black hole growth. In this paper, we establish the relative contribution of these two sources of radiation to reionization and their respective role in establishing and maintaining the high redshift ionizing background. Our volume is typical of an overdense region of the Universe and displays star formation rate and black hole accretion rate densities similar to high redshift protoclusters. We find that hydrogen reionization happens inside-out and is completed by $z \sim 6$ in our overdensity, and is predominantly driven by galaxies, while accreting black holes only play a role at $z \sim 4$.
description: 24+2 pages, 18+1 figures, published in Astronomy & Astrophysics
Additional file 1 of Screening of xylose utilizing and high lipid producing yeast strains as a potential candidate for industrial application
Creators: name: Qvirist, Linnea
name: Mierke, Friederike
name: Vazquez Juarez, Ricardo
name: Andlid, Thomas
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 1: Supplemental Figure 1. Fatty acid (FA) composition and total FA content (%) per dry weight biomass for tested strains after cultivation in five different media. The media were: YNB with either glucose (called Glucose), xylose (called Xylose), or glycerol (called Glycerol), molasses with or without phosphate addition (phosphate addition is indicated by P next to the strain name), and enzymatically treated wheat hydrolysate diluted to 25% of the original concentration (called EWH 25%). The fatty acids detected were 14:0, 16:0, 16:1, 18:0, 18:1, 18:2, 18:3, 20:0, 22:0, 22:2 and 24:0. The detailed corresponding data can be found in Supplementary Table S1. Strains with poor growth were not examined due to too little biomass formation.
Additional file 2 of Screening of xylose utilizing and high lipid producing yeast strains as a potential candidate for industrial application
Creators: name: Qvirist, Linnea
name: Mierke, Friederike
name: Vazquez Juarez, Ricardo
name: Andlid, Thomas
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 2: Supplementary Table S1. Total fatty acid content (given as % of dry weight biomass) and the fatty acid composition (given as mg/g dry weight biomass) in different yeast isolates after cultivation in various substrates. Some isolates did not grow in all media, hence data of fatty acid content or profile is not reported for all combinations of isolates and media.
Induced and non-induced poset saturation problems
Creators: name: Keszegh, Balázs
name: Lemons, Nathan
name: Martin, Ryan R.
name: Pálvölgyi, Dömötör
name: Patkós, Balázs
Publisher: name: arXiv
Year: 2020
Subjects: subject: Combinatorics (math.CO)
subject: FOS: Mathematics

description: A subfamily $\mathcal{G}\subseteq \mathcal{F}\subseteq 2^{[n]}$ of sets is a non-induced (weak) copy of a poset $P$ in $\mathcal{F}$ if there exists a bijection $i:P\rightarrow \mathcal{G}$ such that $p\le_P q$ implies $i(p)\subseteq i(q)$. In the case where in addition $p\le_P q$ holds if and only if $i(p)\subseteq i(q)$, then $\mathcal{G}$ is an induced (strong) copy of $P$ in $\mathcal{F}$. We consider the minimum number $sat(n,P)$ [resp.\ $sat^*(n,P)$] of sets that a family $\mathcal{F}\subseteq 2^{[n]}$ can have without containing a non-induced [induced] copy of $P$ and being maximal with respect to this property, i.e., the addition of any $G\in 2^{[n]}\setminus \mathcal{F}$ creates a non-induced [induced] copy of $P$. We prove for any finite poset $P$ that $sat(n,P)\le 2^{|P|-2}$, a bound independent of the size $n$ of the ground set. For induced copies of $P$, there is a dichotomy: for any poset $P$ either $sat^*(n,P)\le K_P$ for some constant depending only on $P$ or $sat^*(n,P)\ge \log_2 n$. We classify several posets according to this dichotomy, and also show better upper and lower bounds on $sat(n,P)$ and $sat^*(n,P)$ for specific classes of posets. Our main new tool is a special ordering of the sets based on the colexicographic order. It turns out that if $P$ is given, processing the sets in this order and adding the sets greedily into our family whenever this does not ruin non-induced [induced] $P$-freeness, we tend to get a small size non-induced [induced] $P$-saturating family.
description: Added appendix to v3 from v1, as it was accidentally missing from v2
Brief an Matthias Erb
Creators: name: Taurus, Sigismund
Publisher: name: [s.n.]
Year: 1539

description: von Sigismund Taurus
description: Öffentliche Bibliothek der Universität Basel
description: Lateinisch
description: Verzeichnung=Description=Inventaire Januar 2018 HAN-Katalogisierungsregeln Vollständige Rekatalogisierung nach Standortverzeichnis, Briefkatalog und Original
Additional file 3 of Screening of xylose utilizing and high lipid producing yeast strains as a potential candidate for industrial application
Creators: name: Qvirist, Linnea
name: Mierke, Friederike
name: Vazquez Juarez, Ricardo
name: Andlid, Thomas
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 3: Supplementary Table S2. Yeast isolates species and the GenBank code number for the identified strains.