cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Trachydoras paraguayensis
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Doradidae
Trachydoras
Trachydoras paraguayensis

description: Trachydoras paraguayensis (Eigenmann, Ward, 1907) Fig. 20 Body deep; greatest body depth contained 2.7 to 3.1, head length 3.3 to 3.8 times in SL; snout length contained 1.9 to 2.2, horizontal orbital diameter 2.5 to 3.1 and least interorbital width 2.2 to 2.8 times in HL; orbital diameter contained 1.0 to 1.3 times in interorbital width. Mouth subterminal; with dentigerous plates in both premaxilla and dentary. Lateral line with 28-30 plates. Dorsal fin with I,6, pectoral fin with I,7, pelvic fin with 7 and anal fin with 12- 14 rays. Ground color greyish dorsally, whitish to yellowish ventrally. Hyaline or light-beige fins; caudal fin with darkgrey oblique stripe on each lobe (Graça, Pavanelli, 2007). Maximum standard length. 150.0 mm (Graça, Pavanelli, 2007). Distribution. Paraná-Paraguay system. Remarks. Trachydoras paraguayensis is a non-native species from the upper rio Paraná, and its occurrence can be associated with the filling of the Itaipu Reservoir and the consequent inundation of the Sete Quedas Falls.
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on page 67, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
description: {"references": ["Pavanelli CS, Graca WJ, Zawadzki CH, Britski HA, Vidotti AP, Avelino GS, Verissimo S. Fishes from the Corumba Reservoir, Paranaiba River drainage, upper rio Parana basin, State of Goias, Brazil. Check List. 2007; 3 (1): 58 - 64."]}
Additional file 19 of An “expressionistic” look at serrated precancerous colorectal lesions
Creators: name: Marra, Giancarlo
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: FOS: Biological sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 19: Supplementary Table 1. mRNA targets chosen for ISH based on RNA sequencing data from Parker H. et al (ref. [21]) and Kanth P. et al (ref. [38]).
title: Bacterial Lipoproteins Shift Cellular Metabolism to Glycolysis in Macrophages Causing Bone Erosion
Creators: name: Nguyen, Minh Thu
name: Hu, Zhicheng
name: Mohammad, Majd
name: Schöttler, Hannah
name: Niemann, Silke
name: Schultz, Michelle
name: Barczyk-Kahlert, Katarzyna
name: Jin, Tao
name: Hayen, Heiko
name: Herrmann, Mathias
Publisher: name: University of Muenster, Institutional Repository MIAMI
Year: 2023
Subjects: subject: 610 Medicine and health

description: Belonging to a group of membrane proteins, bacterial lipoproteins (LPPs) are defined by a unique lipid structure at their N-terminus providing the anchor in the bacterial cell membrane. In Gram-positive bacteria, LPPs play a key role in host immune activation triggered through a Toll-like receptor 2 (TLR2)-mediated action resulting in macrophage stimulation and subsequent tissue damage demonstrated in 'in vivo' experimental models. Yet the physiologic links between LPP activation, cytokine release, and any underlying switches in cellular metabolism remain unclear. In this study, we demonstrate that 'Staphylococcus aureus' Lpl1 not only triggers cytokine production but also confers a shift toward fermentative metabolism in bone marrow-derived macrophages (BMDMs). Lpl1 consists of di- and tri-acylated LPP variants; hence, the synthetic P2C and P3C, mimicking di-and tri-acylated LPPs, were employed to reveal their effect on BMDMs. Compared to P3C, P2C was found to shift the metabolism of BMDMs and the human mature monocytic MonoMac 6 (MM6) cells more profoundly toward the fermentative pathway, as indicated by lactate accumulation, glucose consumption, pH reduction, and oxygen consumption. 'In vivo', P2C caused more severe joint inflammation, bone erosion, and lactate and malate accumulation than P3C. These observed P2C effects were completely abrogated in monocyte/macrophage-depleted mice. Taken together, these findings now solidly confirm the hypothesized link between LPP exposure, a macrophage metabolic shift toward fermentation, and ensuing bone destruction.
description: Finanziert durch den Open-Access-Publikationsfonds der Universität Münster.
An investigation into the salinity tolerance, oviposition behavior and breeding habitat ecology of a widespread (Aedes aegypti) and restricted (Aedes togoi) mosquito species
Creators: name: Phelan, Orna
Publisher: name: University of British Columbia
Year: 2023

description: There are over 3,500 species of mosquito, occupying a huge range of environments including inland and coastal habitats. Salinity tolerance plays a crucial role in the ecology of mosquitoes as it can determine whether a particular habitat is suitable for larvae. Understanding how aquatic larvae physiologically cope with salt and how adult mosquitoes detect salt is of critical importance to understanding the biology of important vector species. In this study, the larval salinity tolerance, oviposition preference and breeding habitat ecology of a widespread (Ae. aegypti) and restricted (Ae. togoi) mosquito species was investigated to try to understand key physiological and behavioral differences. Ae. aegypti breed and develop in freshwater containers associated with urban environments while Ae. togoi develop in high fluctuating salt-water rockpools. By conducting larval survival studies, I found that, although Ae. togoi larvae are capable of surviving in extremely high concentrations of seawater, Ae. aegypti larvae can tolerate a wider range of ions at intermediate concentrations. This ability to survive in a wide variety of water types could partially explain how Ae. aegypti have been able to spread globally while Ae. togoi remains restricted to coastal areas. Oviposition bioassays found that salinity may not be a key driver of oviposition for Ae. togoi, as it is for Ae. aegypti. Finally, a field study of Ae. togoi in metro Vancouver uncovered that temperature, precipitation, salinity and the interaction of these factors are important predictors of larval abundance. This study has highlighted the importance of investigating field populations as well as conducting laboratory experiments when investigating the biology of a species. In reality, a suite of interacting factors modulates the ability of species to survive in their habitat and these factors can only be uncovered by examining field populations. In addition, a two-species comparison can aid into providing preliminary insight about how evolution has shaped osmoregulatory strategies as well as the chemosensory system in the face of exploiting new habitats. Investigating mosquito physiology and behavior can aid in predicting distribution of mosquito populations and eventually this can aid in developing targeted control strategies for vector species.
Additional file 3 of Design and development of a chimeric vaccine candidate against zoonotic hepatitis E and foot-and-mouth disease
Creators: name: Behloul, Nouredine
name: Baha, Sarra
name: Liu, Zhenzhen
name: Wei, Wenjuan
name: Zhu, Yuanyuan
name: Rao, Yuliang
name: Shi, Ruihua
name: Meng, Jihong
Publisher: name: figshare
Year: 2020
Subjects: subject: Microbiology
subject: FOS: Biological sciences

description: Additional file 3. Clustering data of Seq8-P216 and Seq8-P222 conformation models (Table S1) and fluctuations between the different Seq8-P216 and Seq8-P222 conformation clusters (Table S2) obtained in the flexibility analysis.
Analysis plan for the ASE/ML part of the SMSR survey on self-efficacy
Creators: name: Stephan, Klaas Enno
name: Steinemann, Nina
name: von Wyl, Viktor
name: Manjaly, Zina-Mary
Publisher: name: Zenodo
Year: 2023

description: This analysis plan specifies planned future analyses for the allostatic self-efficacy/machine learning (ASE/ML) part of the Swiss MS Registry study on self-efficacy.
"CH on the move" Introducing the Prototype Digital Twin of the Swiss Mobility System
Creators: name: Grübel, Jascha
name: Vivar Rios, Carlos
name: Balac, Milos
name: Xin, Yanan
name: Franken, Robin M.
name: Ossey, Sabrina
name: Raubal, Martin
name: Axhausen, Kay W.
name: Riba-Grognuz, Oksana
Publisher: name: Zenodo
Year: 2023
Subjects: Digital Twin
Open Platform
Open Source
Open Research Data
Mobility
Switzerland

description: Mobility simulations are crucial for research, industry, and governance. However, simulating mobility systems with reasonable accuracy requires large-scale efforts of data collection, data transformation, data analysis, and data visualization. The paradigm of the digital twin offers a novel perspective on how to manage the data efficiently and make the simulations available more steadily at a lower cost. We introduce the first prototype of the “CH on the move” digital twin that is designed to be openly available to all interested parties to enable a common baseline for transport research in Switzerland. This digital twin is based on the extensible Open Digital Twin Platform (ODTP) that uses containerization, loose coupling, and micro-services to provide dynamically composable digital twins. In its first iteration, “CH on the move” provides an easy-to-use version of the eqasim pipeline for MATSim making it possible to initiate simulations of Switzerland with one click. Future versions of “CH on the move” aim to include a rich set of relevant data sources and analytical pipelines related to transport and mobility and make them easily accessible to research, industry, and governance.
description: This project has been funded by swissuniversities under the Swiss Open Research Data Grant ODTPR-SMS.
Cetopsorhamdia iheringi Shubarti, Gomes 1959
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Heptapteridae
Cetopsorhamdia
Cetopsorhamdia iheringi

description: Cetopsorhamdia iheringi Shubarti, Gomes, 1959 Fig. 21 Body elongated; greatest body depth contained 5.7 to 7.1, head depth 6.9 to 7.5 and caudal peduncle depth 9.2 to 10.1 times in SL; head length 4.5 to 4.9, anal-fin base length 8.1 to 8.7, adipose-fin base length 8.1 to 8.4 and maxillarybarbel length 3.2 to 3.9 times in SL; snout length 2.0 to 2.3, horizontal orbital diameter 6.0 to 6.2 and least interorbital width 2.8 to 3.0 times in HL. Mouth terminal; premaxilla and dentary with several diminute and viliform teeth. Dorsal fin with 7, pectoral fin with 8-11, pelvic fin with 6 and anal fin with 11-15 rays. Ground color dark-brown. Dark-grey fins; caudal fin with dark-brown transverse bar on posterior portion of caudal pecuncle (Graça, Pavanelli, 2007). Maximum standard length. 65.2 mm (Graça, Pavanelli, 2007). Distribution. Upper rio Paraná and rio São Francisco basins.
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on page 67, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
description: {"references": ["Pavanelli CS, Graca WJ, Zawadzki CH, Britski HA, Vidotti AP, Avelino GS, Verissimo S. Fishes from the Corumba Reservoir, Paranaiba River drainage, upper rio Parana basin, State of Goias, Brazil. Check List. 2007; 3 (1): 58 - 64."]}
Additional file 1 of An “expressionistic” look at serrated precancerous colorectal lesions
Creators: name: Marra, Giancarlo
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: FOS: Biological sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 1: Supplementary Figure 1. In situ hybridization experiments: positive and negative controls. Staining controls included mRNA of the human housekeeping gene PPIB (positive control; the punctate labeling in this panel is brown since a different chromogen was used for this hybridization) (A), the bacterial RNA DapB (negative control) (B), and the long noncoding RNA of the X chromosome-located gene XIST (control for tissue-donor sex: positive for female, negative for male, panels C and D, respectively, and Table 1).
Heptapterus mustelinus
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Heptapteridae
Heptapterus
Heptapterus mustelinus

description: Heptapterus mustelinus (Valenciennes, 1835) Fig. 21 Body elongated; greatest body depth contained 10.0 to 10.6, head depth 11.9 to 12.2 and caudal peduncle depth 17.7 to 18.4 times in SL; head length 6.1 to 6.4, anal-fin base length 4.9 to 5.5, adipose-fin base length 2.0 to 2.2 and maxillary-barbel length 6.0 to 7.2 times in SL; snout length 2.9 to 3.1, horizontal orbital diameter 4.9 to 5.2 and least interorbital width 3.7 to 3.9 times in HL. Mouth terminal; premaxilla and dentary with several diminute and viliform teeth. Dorsal fin with 7, pectoral fin with 6-9, pelvic fin with 6 and anal fin with 15-17 rays. Ground color dark-brown; dark-brown transverse bars on dorsum. Hyaline or lightbeige fins (Graça, Pavanelli, 2007). Maximum standard length. 130.0 mm (Graça, Pavanelli, 2007). Distribution. Río de la Plata basin and costal drainages of Southern Brazil. Coments. Heptapterus mustelinus is a non-native species from the upper rio Paraná, and its occurrence can be associated with the filling of the Itaipu Reservoir and the consequent inundation of the Sete Quedas Falls (Langeani et al., 2007).
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on page 67, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
description: {"references": ["Pavanelli CS, Graca WJ, Zawadzki CH, Britski HA, Vidotti AP, Avelino GS, Verissimo S. Fishes from the Corumba Reservoir, Paranaiba River drainage, upper rio Parana basin, State of Goias, Brazil. Check List. 2007; 3 (1): 58 - 64.", "Langeani F, Castro RMC, Oyakawa OT, Shibatta OA, Pavanelli CS, Casatti L. Diversidade da ictiofauna do alto rio Parana: composicao atual e perspectivas futuras. Biota Neotropica, 2007; 7 (3): 181 - 97."]}
Additional file 2 of An “expressionistic” look at serrated precancerous colorectal lesions
Creators: name: Marra, Giancarlo
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: FOS: Biological sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 2: Supplementary Figure 2. (Panels A through O). RNA-sequencing-based expression profiles of the targets included in this study based on data published by Parker et al. (reference [21]). Integrative Genomics Viewer snapshots are shown for the serrated lesions and cADNs investigated by Parker et al. All lesions assessed in this study were from the proximal colon (details in reference [21]). Seventeen SSLs are compared with 15 cADNs, and each track in the snapshot shows the level of a given RNA (i.e., peaks across exons proportional to the number of sequencing reads) in the lesion (SSLs: red track: cADNs: blue track). Below each of these tracks is a track showing the expression level of the same RNA in a patient-matched sample of normal mucosa from the proximal colon (i.e., cecum, ascending, hepatic flexure or transversum) harboring the precancerous lesion (pink track: normal mucosa of an SSL carrier; light blue track: normal mucosa of a cADN carrier).
“Revitalizing” environmental assessment : interpreting the Environmental Assessment Act in light of the United Nations Declaration on the Rights of Indigenous Peoples
Creators: name: Gilmour, Thomas
Publisher: name: University of British Columbia
Year: 2023

description: It has been five years since British Columbia passed the Environmental Assessment Act, 2018 (EAA). The EAA was passed amid provincial representations that it would help bring the principles of the United Nation’s Declaration on the Rights of Indigenous Peoples into effect through British Columbia’s environmental assessment process. In this thesis, I investigate to what extent this is the case. To do so, I outline a series of interpretive frameworks for three of the United Nations Declaration’s core concepts, and apply those interpretive frameworks to the EAA to see which interpretations the Act most embodies. I begin the thesis by introducing the history of environmental assessment, and outlining its procedures, its intersection with Aboriginal and Constitutional law in Canada, and the EAA’s reform process. In the second chapter, I outline different interpretive frameworks relating to the United Nations Declaration’s concepts of self-determination, Free, Prior and Informed Consent, and Indigenous territorial and resource control. For each of these concepts, I present a conservative and expansive interpretation, drawn from Canadian and First Nation’s scholarship, jurisprudence, and government writings. In the third chapter, I apply these frameworks to the EAA, and find that generally the Act’s provisions and attendant policy guidelines espouse a conservative interpretation of the Declaration. While expansive interpretations of the Declaration are possible through, for example, the EAA’s consent agreement, and Indigenous Led Impact Assessment regimes, these things are exceptions under the EAA’s general framework, rather than the rule. Finally, in the fourth chapter I demonstrate an expansive reading of the EAA through applying an expansive interpretive framework to the EAA’s dispute resolution provisions. Ultimately, I encourage further critique of attempts to legislate the United Nations Declaration. How the Declaration is represented by legislatures and in policy guidelines critically affects how its implementation plays out in practice. It matters how jurisdictions like British Columbia or Canada implement the Declaration, and whose understandings of it become most embodied in the resulting domestic legal framework.
Additional file 17 of An “expressionistic” look at serrated precancerous colorectal lesions
Creators: name: Marra, Giancarlo
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: FOS: Biological sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 17: Supplementary Figure 17. In situ hybridization analysis of FAM3B in serrated precursor lesions, cADNs, and normal colorectal mucosa. In contrast to HOXD13 and HOXB13 of the two previous supplementary figures, FAM3B is highly expressed in the normal epithelium of the proximal colon (C and G) but unexpressed in the distal colon (H) (Table 1; see also Supplementary Figures 2 and 3). Moderate and localized (patchy or superficial) staining was seen in all tumors regardless of type and colorectal segment of origin (A, B, D, E, and F), although higher levels were often found in lesions from the proximal colon.
Additional file 3 of An “expressionistic” look at serrated precancerous colorectal lesions
Creators: name: Marra, Giancarlo
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: FOS: Biological sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 3: Supplementary Figure 3. (Panels A through K). RNA-sequencing-based expression profiles of the targets included in this study based on data published by Kanth et al. (reference [38]). Clinical data on the lesions and normal mucosa samples investigated by Kanth et al. are in panel A, while the RNA expression level (i.e., logCPM: log2 counts per million) of the targets in each tissue is graphically shown in the following panels.
Additional file 7 of An “expressionistic” look at serrated precancerous colorectal lesions
Creators: name: Marra, Giancarlo
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: FOS: Biological sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 7: Supplementary Figure 7. In situ hybridization analysis of SEMG1 in serrated precursor lesions, cADNs and normal colorectal mucosa. SEMG1 is moderately expressed in SSLs and HPs (A-D) along most of the longitudinal axis of serrated crypts, with lower-level expression at their bases and mouths (Table 1). Patches of low expression were also seen in TSAs (E and F). In cADNs and normal mucosa, SEMG1 was virtually absent (G and H, respectively) with the exception of a few cells with one or two dot-like signals each reflecting a single RNA molecule.
Corydoras Lacepede 1803
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Callichthyidae
Corydoras

description: Corydoras sp. Fig. 19 Body deep and elliptical; greatest depth contained 3.0 and caudal peduncle depth 6.8 times in SL; head length 3.1, predorsal distance 6.5 and maxillary-barbel length 6.1 in SL; snout length 1.9, horizontal orbital diameter 3.8 and least interorbital width 3.0 in HL. Mouth inferior. Lateral line with 4 pores on upper series of plates. Dorsolateral series with 24 plates and ventrolateral series with 21 plates. Dorsal fin with II,8, pectoral with I,8, pelvic and anal fins with 6 rays. Ground color yellow to pale brown; six dark-brown spots on mid-line of flank; ventrolateral plates dark-grey posteriorly to pelvic fin; middle portion of caudal-fin base with dark-brown spot. Maximum standard length. 31.8 mm. Distribution. Only known from the Córrego Santa Maria, tributary of the rio Iguatemi, right bank of the upper rio Paraná. Remarks. Only two specimens of Corydoras sp. were captured in a tributary of the rio Iguatemi, in 2008 by V. F. B. Silva and collaborators. According to L. F. C. Tencatt (oral communication, 2011) this species is apparently new to science.
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on page 63, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
Mixed Reality (XR) research and practice: Exploring a new paradigm in education
Creators: name: Aguayo, Claudio
Publisher: name: figshare
Year: 2021
Subjects: subject: 130306 Educational Technology and Computing
subject: FOS: Educational sciences

description: Aguayo, C. (2021). Mixed Reality (XR) research and practice: Exploring a new paradigm in education. Pacific Journal of Technology Enhanced Learning, 3(1), 41-42. https://doi.org/10.24135/pjtel.v3i1.104
Additional file 4 of An “expressionistic” look at serrated precancerous colorectal lesions
Creators: name: Marra, Giancarlo
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: FOS: Biological sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 4: Supplementary Figure 4. In situ hybridization analysis of VSIG1 expression in serrated precursor lesions, cADNs, and normal colorectal mucosa. VSIG1 expression is a bona fide marker of the crypt serration found in SSLs and HPs (A-D), where very high levels (according to the scoring system depicted in Fig. 1) are present along the entire longitudinal axis of the serrated crypts, except the bases and mouths. The three TSAs included in this study were largely VSIG1-negative (E), but patchy staining of SSL-type glands within two of these lesions was noted (F) (TSA 3, shown here, and TSA 1, as reported in Table 1). cADNs (G) and normal mucosa (H) were negative. Lesions are numbered as in Table 1.
Trachelyopterus Valenciennes in Cuvier & Valenciennes 1840
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Auchenipteridae
Trachelyopterus

description: Trachelyopterus sp. Fig. 18 Body deep; greatest body depth contained 4.0 to 4.3 times in SL; head length 4.2 to 4.5, anal-fin base length 2.9 to 3.1 in SL; snout length 3.6 to 3.7, horizontal orbital diameter 6.2 to 6.4 and least interorbital width 1.6 to 1.8 in HL. Mouth terminal with dentigerous tooth plates in both premaxilla and dentary. Dorsal fin with I,6, pectoral fin with I,7, pelvic fin with 8 and anal fin with 21-25 rays. Adipose fin absent. Ground color pale yellow to orange with several dark-brown irregular blotches as well as fins. Adipose fin absent (Graça, Pavanelli, 2007). Maximum standard length. 128.0 mm (Graça, Pavanelli, 2007). Distribution. Upper rio Paraná floodplain.
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on pages 62-63, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
description: {"references": ["Pavanelli CS, Graca WJ, Zawadzki CH, Britski HA, Vidotti AP, Avelino GS, Verissimo S. Fishes from the Corumba Reservoir, Paranaiba River drainage, upper rio Parana basin, State of Goias, Brazil. Check List. 2007; 3 (1): 58 - 64."]}
Blue-Cloud Poster - EGI Conference 2021
Creators: name: Drago, Federico
name: Pagano, Pasquale
name: Greco, Andrea
Publisher: name: Zenodo
Year: 2021

description: Enhancing collaborative ocean science with the Blue-Cloud services Blue-Cloud is the thematic EOSC for the marine domain supporting FAIR and Open Science by developing a web-based environment to provide scientists & researchers with enhanced analytical capabilities and cloud-computing resources, underpinned by simplified access to a wealth of multidisciplinary and interoperable marine data services. The project builds on existing European marine data infrastructures and e-infrastructures federating their services within the Blue-Cloud framework, enabling researchers to find, access, share, combine and reuse quality data across disciplines and countries. These infrastructures include key players such as EMODnet, Copernicus, SeaDataNet, Euro-Argo, D4Science, EUDAT, and more. The federation is taking place at the levels of (meta)data resources, computing resources and analytical service resources, driven by collaboration across research, data and e-infrastructures. A Blue-Cloud Data Discovery and Access Service (DDAS) is being finalised to facilitate access to multi-disciplinary datasets. The overall concept is that the DDAS functions as a broker both for metadata and for data access, interacting with web services and APIs from each of the blue data infrastructures (BDIs) as federated in the Blue-Cloud. This way, it facilitates users to discover first at the collection level which BDIs might have data sets, interesting for their use case, and next, to identify and download relevant data sets at granule level from those selected BDIs, by means of a common interface. https://data.blue-cloud.org/ A Blue Cloud-Virtual Research Environment (VRE) has been established to enable collaborative research. Services include Data Analytics (Data Miner, Software and Algorithms Importer (SAI), RStudio, JupyterHub), Spatial Data Infrastructure to store, discover, access, and manage vectorial and raster georeferenced datasets, and services and components enabling users to document and then either share with selected colleagues or make available online any generated product (e.g. analytical methods, workflows, processes, notebooks). https://blue-cloud.d4science.org/ This innovation potential is explored and unlocked by a series of Virtual Labs developed by five real-life demonstrators, addressing societal challenges in the domains of genomics, fishery, aquaculture, biodiversity and environment. https://blue-cloud.d4science.org/explore The demonstrators are showcasing how Blue-Cloud can enhance collaborative research in support of the EU Green Deal and key international initiatives, such as the United Nations Decade of Ocean Science for Sustainable Development. The poster highlights the key services developed within the Blue-Cloud technical framework and their potential impact on marine research towards tackling global challenges.
title: Инновационные технологии обеспечения педагогической практики по психологии. Ч.I. Учебная практика
title: Учебно-методическое пособие
titleType: Subtitle
Creators: name: Морозюк С.Н.
name:  Горбенко И.А.
Publisher: name: Московский педагогический государственный университет
Year: 2019

description: В данном пособии представлены инновационные технологии реализации учебной педагогической практики в новом формате. Системно организованный в пособии материал: деловые игры, задания, упражнения – это, по сути, воплощение идеи квазипрактики, направленной на создание у студентов психологической готовности к педагогической деятельности. Пособие предназначено для преподавателей психолого-педагогических дисциплин, студентов высших учебных учреждений, а также специалистов в области педагогической психологии.
description: This tool introduces innovative technologies of training of pedagogical practice in the new format. Organized in the manual: business games, tasks, exercises is, in fact, the embodiment of the idea quasiparticle aimed at creating in students of psychological readiness to pedagogical activity. The manual is intended for teachers of psychological and pedagogical disciplines, students of higher educational institutions and specialists in the field of educational psychology.
Additional file 8 of An “expressionistic” look at serrated precancerous colorectal lesions
Creators: name: Marra, Giancarlo
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: FOS: Biological sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 8: Supplementary Figure 8. In situ hybridization analysis of AQP5 in serrated precursor lesions, cADNs and normal colorectal mucosa. AQP5 is also a bona fide marker of serrated tumors: it is very highly expressed in the lower half of serrated crypts in SSLs and HPs (A-C) and in 2 of the 3 TSAs we analyzed (D-F), but no expression was observed in cADNs (G) or normal mucosa (H) (Table 1).
Additional file 5 of An “expressionistic” look at serrated precancerous colorectal lesions
Creators: name: Marra, Giancarlo
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: FOS: Biological sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 5: Supplementary Figure 5. In situ hybridization analysis of ANXA10 expression in serrated precursor lesions, cADNs, and normal colorectal mucosa. ANXA10 is a specific marker of SSLs (A and B) and HPs (Table 1), where its expression pattern is similar to that of VSIG1 (Supplementary Figure 4). High expression is also seen in a few glands in TSAs, on the surfaces of these lesions, or distributed in irregular patches (C, D and E, Table 1). Isolated positive cells or glands can also be seen very rarely on the surface of cADNs (F and G), but the normal mucosa is consistently negative (H).
Additional file 9 of Gut microbiota is associated with the effect of photoperiod on seasonal breeding in male Brandt’s voles (Lasiopodomys brandtii)
Creators: name: Zhu, Hanyi
name: Li, Guoliang
name: Liu, Jing
name: Xu, Xiaoming
name: Zhang, Zhibin
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 9: Table S4. Spearman correlation coefficients (r) between ASVs and testicular genes in the photoperiod experiment.
Imparfinis Eigenmann & Norris 1900
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Heptapteridae
Imparfinis

description: Imparfinis 1. Body very elongate; adipose-fin base very long, extending to caudal fin, its length about half the stardard length, several times longer than anal-fin base; head depressed .............................................................. I. borodini 1’. Body not elongate; adipose-fin base short, not extending to caudal fin, its length contained several times in stardard length, about the same as that of anal-fin base; head not depressed.............................................................. 2 2. Dark-brown inconspicuous longitudinal band along flank; first dorsal-fin ray approximately the same size as the second................................................................. I. mirini 2’. Dark-brown conspicuous longitudinal band along flank; first dorsal-fin ray shorter than the second............................................................................................ I. schubarti
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on pages 67-68, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
Additional file 6 of An “expressionistic” look at serrated precancerous colorectal lesions
Creators: name: Marra, Giancarlo
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: FOS: Biological sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 6: Supplementary Figure 6. In situ hybridization analysis of ACHE expression in serrated precursor lesions, cADNs, and normal colorectal mucosa. In SSLs (A and B) and HPs (C) (Table 1), ACHE is very highly expressed at the lesion surface and in the upper half of the serrated crypts. Numerous ACHE-positive crypts are also seen on the surfaces of TSAs, especially in TSA 3 (F and G, Table 1). cADNs are negative with the exception of a few cells with low-to-moderate expression on the surface of adenomatous villi (D and E). Moderate to high ACHE expression was observed in the superficial epithelium of normal crypts (H), submucosa plexi (inset in panel H), some stromal cells (example in panel E), and in lymphocytic folliculi (not shown).
PARTHENOS D3.3 Foresight Study and Interdisciplinary Research Agenda
Creators: name: Hedges, Mark
name: Stuart, David
name: Tzedopoulos, George
name: Bassett, Sheena
name: Garnett, Vicky
name: Giacomi, Roberta
name: Sanesi, Maurizio
Publisher: name: Zenodo
Year: 2019
Subjects: digital humanities
cultural heritage
foresight research

description: In recent years there has been rapid growth both in the development of digital methods and tools and in their application across a wide range of disciplines within humanities and cultural heritage studies. The future development of this landscape depends on a complex and dynamic ecosystem of interactions between a range of factors: changing scholarly priorities, questions and methods; technological advances and new tool development; and the broader social, cultural and economic contexts within which both scholars and infrastructures are situated. This foresight study investigates how digital research methods, technologies and infrastructures in digital humanities and cultural heritage may develop over the next 5-10 years, and provides some recommendations for future interventions to optimize this development. For a summary see: PARTHENOS Foresight - Executive Summary (DOI: 10.5281/zenodo.3460653). All PARTHENOS deliverables are available at: http://www.parthenos-project.eu/resources/projects-deliverables
The social psychology of the free speech and hate speech debate
Creators: name: Goldman-Hasbun, Julia
Publisher: name: University of British Columbia
Year: 2023

description: Freedom of speech has long been considered an essential value in democracies. However, its boundaries concerning hate speech continue to be contested across many social and political spheres, including governments, social media, and university campuses. Despite the potential of examining the social psychological dynamics of this debate for advancing theory on meaning-making, polarization, emotions, and social status, empirical research in this area is scarce. This dissertation aims to address this gap by examining first-hand perspectives and media frames on the free speech and hate speech debate using digital, archival, and interview data from an online forum and four university campuses. The first empirical chapter focuses on the moral discourse of individuals within an online free speech community. I analyze 418 discussion posts on the r/FreeSpeech subreddit using a digital ethnographic approach and find that most users understand free speech in an absolutist sense but differ in their justifications for why hate speech should be allowed. The study highlights the variation in free speech discourse within online spaces. The second empirical chapter explores campus culture and students’ meaning-making processes toward speech on campus at four large public universities in the U.S. and Canada. The chapter, which draws on data from 150 student newspaper articles and 55 semi-structured interviews with students, finds the culture on each of the four campuses to be polarized around free speech issues. However, interview participants express complex and sometimes conflicting meaning-making processes, particularly around the concept of “harm,” theories about speech and how it spreads, and the roles and responsibilities of universities in society. Overall, these findings challenge the assumption that the campus free speech debate is neatly divided along ideological or moral lines. The third empirical chapter investigates how social status shapes university students’ experiences of campus speech. I draw on the same interview data and find that lower-status students express a high degree of fear and anxiety about expressing themselves openly on a range of politicized topics, including free speech itself. This self-censorship negatively impacts lower-status students’ educational experiences, sense of belonging, and professional aspirations.
Additional file 1 of Genetic analysis of the ATP11B gene in Chinese Han population with cerebral small vessel disease
Creators: name: Yu, Wen-Kai
name: Wang, Yun-Chao
name: Gao, Yuan
name: Shi, Chang-He
name: Fan, Yu
name: Yu, Lu-Lu
name: Zhao, Zi-Chen
name: Li, Shan-Shan
name: Xu, Yu-Ming
name: Li, Yu-Sheng
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Computational Biology

description: Additional file1.
Additional file 9 of An “expressionistic” look at serrated precancerous colorectal lesions
Creators: name: Marra, Giancarlo
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: FOS: Biological sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 9: Supplementary Figure 9. In situ hybridization analysis of LINC00520 in serrated precursor lesions, cADNs and normal colorectal mucosa. The long noncoding LINC00520 RNA is also a good marker of serrated crypts in SSLs (A and B) and HPs (C and D), where it is moderately but consistently expressed in their upper half (Table 1). It is essentially absent in cADNs (E) and TSAs (F) with the exception of rare cells with low expression at the surfaces of these lesions and a few positive SSL-like glands in TSA 3 (G). Moderate expression was also observed in the uppermost epithelial layer of the normal colorectal mucosa (H).
Growth, buckling, and rupture of abdominal aortic aneurysms
Creators: name: Hejazi, Masoud
Publisher: name: University of British Columbia
Year: 2023

description: The objective of this work was to assess the influence of buckling on the growth and rupture of Abdominal Aortic Aneurysms (AAAs). AAAs are one of the most common under-diagnosed cardiovascular diseases in North America. They manifest as localized bulges in arteries, posing a risk of rupture with fatal consequences. Assessing the rupture risk of AAAs is complicated by complex mechano-biological factors; size-based criterion is often used to guide surgical interventions. It is often found that AAAs can exceed the size recommended (≥ 5.5 cm) for surgical intervention, and yet do not rupture, and vice versa. AAAs exceeding the clinically recommended size are often found in a tortuous state. Since in-vivo testing is impossible to assess the rupture risk of AAAs, inflation tests on hyperelastic tubes were performed to advance the mechanistic modelling, and to inform our clinical study. Mechanical instability in a pre-tensioned finite hyperelastic tube subjected to an internal pressure produces a spatially localized bulge. The fate of the bulge under continued inflation is governed by the end- conditions and the initial tension in the tube. Buckling was found to confer protection against rupture. Failure maps in the stretch parameter space and in stretch–tension space are constructed by extending existing membrane theory for bulge formation and buckling. Biologically relevant constitutive models for arteries are implemented in Finite element analyses (FEA). Buckled AAAs were found to grow without rupture under favourable arterial pre-tensions. Failure maps incorporating post-bifurcation (bulging and buckling) response are constructed to delineate the regimes of growth, buckling and rupture of an AAA. Finally, a retrospective review is performed on a database of patients who had undergone AAA repair to assess whether buckling (tortuosity) confers protection against rupture. Greater aortic buckling was found in the unruptured AAAs compared with the ruptured AAAs at the same matched diameter, pointing to the need to incorporate not only the size but also tortuosity in clinical interventions.
Políticas e Práticas de Gestão de Pessoas no Contexto da Pandemia de Covid-19
Creators: name: Vasconcelos, Kátia Cyrlene De Araujo
name: Mello, Andreza Sampaio De
name: Silva Junior, Annor Da
Publisher: name: Conferência - Investigação e Intervenção em Recursos Humanos
Year: 2021

description: O artigo tem como objetivo compreender como as políticas e práticas de Gestão de Pessoas (GP) estão sendo articuladas no contexto da pandemia de Covid-19, sob o ponto de vista de gestores de GP de empresas sediadas no Espírito Santo, região sudeste do Brasil. A pesquisa foi desenvolvida em um cenário de transformação onde se discute a emergência de novos modelos de gestão e negócios em decorrência da pandemia de Covid-19 e da aceleração de mudanças nas relações de trabalho.
description: Conferência - Investigação e Intervenção em Recursos Humanos, N.º 10 (2021): X Conferência Internacional de Investigação e Intervenção em RH
Imparfinis borodini Mees, Cala 1989
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Heptapteridae
Imparfinis
Imparfinis borodini

description: Imparfinis borodini Mees, Cala, 1989 Fig. 21 Body elongated; greatest body depth contained 8.0, head depth 10.1 and caudal peduncle depth 14.4 times in SL; head length 4.0, anal-fin base length 8.8, adipose-fin base length 2.9 and maxillary-barbel length 4.8 times in SL; snout length 3.0, horizontal orbital diameter 5.7 and least interorbital width 4.5 times in HL. Mouth terminal; premaxilla and dentary with several diminute teeth. Dorsal fin with 7, pectoral fin with 8, pelvic fin with 6 and anal fin with 8 rays. Ground color pale brown; dark-brown transverse bars on dorsum; dark-brown inconspicuous longitudinal stripe along lateral line. Maximum standard length. 105.0 mm. Biological data. Lives in streams with sand, silt and pebbles (Sarmento-Soares et al., 2016). Distribution. Upper rio Paraná, rio São Francisco and rio Tocantins basins.
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on page 68, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
description: {"references": ["Sarmento-Soares LM, Bristki HA, Anjos M, Zanata AM, Martins- Pinheiro RF, Barreto MG. First record of genus Imparfinis from a northeastern coastal Brazilian river basin: I. borodini Mees & Cala, 1989 in Rio de Contas, Bahia. Check List [serial on the internet]. 2016 [cited 2016 Dec 08]; 12 (1): 1832. Available from: http: // dx. doi. org / 10.15560 / 12.1.1832"]}