cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 2: Table S2. of A robust (re-)annotation approach to generate unbiased mapping references for RNA-seq-based analyses of differential expression across closely related species
Creators: name: Torres-Oliva, Montserrat
name: Almudi, Isabel
name: McGregor, Alistair
name: Posnien, Nico
Publisher: name: Figshare
Year: 2016
Subjects: subject: Molecular Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology
subject: Computational Biology

description: Raw values for the length differences of gene models between species. This table is the basis for Fig.Â 2. (DOCX 15 kb)
Additional file 17: of Comparative expression profiling reveals a role of the root apoplast in local phosphate response
Creators: name: Hoehenwarter, Wolfgang
name: MĂśnchgesang, Susann
name: Neumann, Steffen
name: Majovsky, Petra
name: Abel, Steffen
name: MĂźller, Jens
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Detailed description of protein extraction and LC-MS analysis. (PDF 76 kb)
Koeleria hirsuta Gaudin
Creators: name: Konrad Lauber
name: Gerhart Wagner
name: Andreas Gygax
Publisher: name: Haupt Verlag
Year: 2018
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Poales
Poaceae
Koeleria
Koeleria hirsuta

description: Koeleria hirsuta Gaudin
Artbeschreibung: Ähnlich wie K. vallesiana, aber die grundständigen, den Stängelgrund verdickenden Blattscheiden nicht in ein Fasernetz aufgelöst, Blätter blaugrün, Blütenstand nur 2-4 cm lang, dicht, Ährchen meist violett überlaufen, Hüllspelzen zottig, Deckspelzen behaart und meist mit 1-2 mm langer Grannenspitze.
Blütezeit: 7-8
Standort und Verbreitung in der Schweiz: Steinige, trockene Wiesen / subalpin-alpin / GR, nördliches TI, UR, östliches VS
Verbreitung global: Südalpin
Ökologische Zeigerwerte nach Landolt & al. (2010)
BodenfaktorenKlimafaktorenSalztoleranzFeuchtezahl Fmässig trockenLichtzahl LhellSalzzeichen--Reaktionszahl Rsauer (pH 3.5-6.5)Temperaturzahl Tunter-alpin, supra-subalpin und ober-subalpin (Arven-Lärchenwälder)Nährstoffzahl NnährstoffarmKontinentalitätszahl Ksubkontinental (niedrige relative Luftfeuchtigkeit, grosse Temperaturschwankungen, eher kalte Winter)
Volksname Deutscher Name: Behaarte Kammschmiele Nom français: Koelérie velue Nome italiano: Paleo irsuto
description: Published as part of Konrad Lauber, Gerhart Wagner & Andreas Gygax, 2018, Flora Helvetica - Poaceae, pp. 1458-1570 in Flora Helvetica, Bern :Haupt Verlag on page 1556
Assessing Contraceptive Attitudes of Nigerian Women: A Cross-Sectional Online Study
Creators: name: LASISI, G.E
Publisher: name: gjrpublication
Year: 2024

description: BACKGROUNDContraception has been considered an essential component of any country's reproductive health. This is because it not only assists couples and individuals in determining the number of children they want to have, but it also assists them in spacing their children. Despite these benefits, contraceptive use is low in Nigeria.

OBJECTIVES: To assess attitudes towards contraceptives among women in Nigeria and practices of contraception among women in Nigeria.

MATERIAL AND METHODS: This is a description cross sectional online study conducted with 144 respondents using convenience sampling technique. Date was collected via Qualtrics and analyse via SPSS.

RESULTS: The statistical analysis reveal that most of the participant have positive attitude towards contraception a mean attitude score of (x) of 88.37. The most used contraception among Nigerian women is condom 69.4%. Conclusion: Nigerian women exhibit a positive attitude towards contraception. However, despite the positive attitude, the usage is low. It is crucial for the government and relevant agencies to prioritise public health measures by addressing the underlying factors and removing obstacles to access. This includes ensuring the convenient availability of contraception and incorporating health insurance into comprehensive healthcare packages.
MOESM1 of Three-steps in one-pot: whole-cell biocatalytic synthesis of enantiopure (+)- and (â  )-pinoresinol via kinetic resolution
Creators: name: Ricklefs, Esther
name: Girhard, Marco
name: Urlacher, Vlada
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. DNA-sequences of the synthetic genes (syatprr2 and syfiplr), plasmids and strains used within this study.
Factors affecting the permeability of gas shales
Creators: name: Pathi, Venkat Suryanarayana Murthy
Publisher: name: University of British Columbia
Year: 2009

description: The mechanical properties and matrix permeability of gas shales are the most important properties in determining their production capacity. In this research, I have investigated the matrix permeability and rock mechanical properties of Western Canadian and Woodford shales. The matrix permeability was measured using pulse decay experiment. The pulse decay experiment was employed with triaxial experiments combined with mercury porosimetry, helium pydnometry, Rock-Eval pyrolysis, SEM and X-ray diffraction analysis to measure rock strength, pore size, porosity, total organic content, fabric and composition of samples. The permeability results were correlated with effective stress, anisotropy, fabric, rock strength, porosity, pore size and total organic content. Mineralogy plays an important role in determining the permeability of Canadian and Woodford shales. Higher permeability was observed in samples with high clay content, and low permeability was observed in samples with high quartz and carbonate content. Among the clay-, silica-, and calcite-rich Canadian shales, the calcite-rich shales had a very low permeability (1O⁻⁷ md) compared to other shales. The permeability of all shales decline exponentially with increasing effective stress. Samples that were tested parallel to bedding had higher permeabilities than samples were tested normal to bedding. Among shales, the quartz-rich shales showed differences of three to four orders of magnitude for the samples tested parallel to bedding, compared to those tested normal to the bedding. The largest anisotropy was found in the clay-rich samples. Clay-rich shales also have a well developed fabric with a strongly preferred orientation, while the quartz-rich shales had random orientation of the fabric. The porosimetry results suggest that fluid flow is mostly in the meso (2-50 nm) and macro pores (>50 nm) of the Woodford shales. Samples with higher clay content (>30%) showed a higher intrusion volume in macro pores, while samples with higher quartz content showed intrusion volume in micro pores. Porosity is correlated to permeability in the Western Canadian shales and showed a linear correlation within the Woodford shales. Even though calcite-rich Canadian shales and quartz-rich Woodford shales have high TOC content, TOC was not seen to effect permeability. Triaxial compression rock testing was conducted on the Woodford shales to measure the elastic properties and strength behaviour of shale. Lithologic composition plays an important role in the strength and pore compressibility of shale. Quartz-rich or carbonate rich shales have a brittle behaviour and clay-rich shales have a ductile behaviour. Pore compressibility is greater in the clay-rich shales, and less in the quartz-rich shales.
Additional file 1: of Interventions for preventing or treating malnutrition in problem drinkers who are homeless or vulnerably housed: protocol for a systematic review
Creators: name: Thorley, Helen
name: Porter, Katie
name: Fleming, Clare
name: Jones, Tim
name: Kesten, Joanna
name: Marques, Elsa
name: Richards, Alison
name: SavoviÄ, Jelena
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Computational Biology

description: Search strategyâ  Medline (Ovid). A detailed search strategy for Medline. (245 KB)
Koeleria macrantha Schult.
Creators: name: Konrad Lauber
name: Gerhart Wagner
name: Andreas Gygax
Publisher: name: Haupt Verlag
Year: 2018
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Poales
Poaceae
Koeleria
Koeleria macrantha

description: Koeleria macrantha (Ledeb.) Schult.
Artbeschreibung: 10-50 cm hoch. Am Grund meist durch erhalten gebliebene Blattscheiden verdickt. Blätter graugrün, meist eingerollt, gleichmässig locker bis dicht behaart, aber am Rand nicht abstehend bewimpert. Blütenstand 4-8 cm lang, dicht und kaum unterbrochen. Ährchen ca. 5 mm lang. Spelzen meist nur auf dem Kiel fein und borstig behaart.
Blütezeit: 6-7
Standort und Verbreitung in der Schweiz: Auf sehr trockenen Böden / kollin-subalpin / A, J, vereinzelt M
Verbreitung global: Eurasiatisch
Ökologische Zeigerwerte nach Landolt & al. (2010)
BodenfaktorenKlimafaktorenSalztoleranzFeuchtezahl F--Lichtzahl L--Salzzeichen--Reaktionszahl R--Temperaturzahl T--Nährstoffzahl N--Kontinentalitätszahl K--
Volksname Deutscher Name: Grossblütige Pyramiden-Kammschmiele, Zierliche Pyramiden-Kammschmiele Nom français: Koelérie à grandes fleurs
description: Published as part of Konrad Lauber, Gerhart Wagner & Andreas Gygax, 2018, Flora Helvetica - Poaceae, pp. 1458-1570 in Flora Helvetica, Bern :Haupt Verlag on page 1556
MOESM1 of Jejunal perforation due to ingested buffalo bone mimicking acute appendicitis
Creators: name: Yadav, Ajay
name: Gyanendra Malla
name: Kunal Deo
name: Giri, Saroj
name: Bishnu Bhattarai
name: Shailesh Adhikary
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 1. Care case report timeline.
Additional file 1: Table S1. of Perspectives of obese children and their parents on lifestyle behavior change: a qualitative study
Creators: name: AAH Schalkwijk
name: SDM Bot
name: L. De Vries
name: MJ Westerman
name: G. Nijpels
name: PJM Elders
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Interview guide. Table S2. Observation protocol. Table S3. Themes and summary per family. (DOCX 25Â kb)
Additional file 4: Figure S2. of A robust (re-)annotation approach to generate unbiased mapping references for RNA-seq-based analyses of differential expression across closely related species
Creators: name: Torres-Oliva, Montserrat
name: Almudi, Isabel
name: McGregor, Alistair
name: Posnien, Nico
Publisher: name: Figshare
Year: 2016
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Correlation plots for DESeq2 including length correction. Relation between length differences and the log2-fold change. Comparisons between D. mauritiana and D. melanogaster are shown on the left side, comparisons between D. mauritiana and D. simulans are shown on the right side. On the first row, the published annotations are used as mapping references; on the second row, the directly re-annotated references are used as mapping references and on the third row, the reciprocally re-annotated references are used. Dots represent genes with length difference > 49 bp in these annotations. Genes significantly differentially expressed in the presented analysis (padj
Koeleria pyramidata P. Beauv.
Creators: name: Konrad Lauber
name: Gerhart Wagner
name: Andreas Gygax
Publisher: name: Haupt Verlag
Year: 2018
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Poales
Poaceae
Koeleria
Koeleria pyramidata

description: Koeleria pyramidata (Lam.) P. Beauv.
Artbeschreibung: (10-) 50-120 cm hoch, am Grund nicht durch Blattscheiden verdickt. Blätter grün, flach, am Rand abstehend bewimpert. Blütenstand 5-12 cm lang, locker, im unteren Teil unterbrochen. Ährchen 6-8 mm lang. Spelze fein und borstig bewimpert, selten fast kahl.
Blütezeit: 6-7
Standort und Verbreitung in der Schweiz: Trockene Wiesen, lichte Föhren- und Eichenwälder / kollin-subalpin / CH
Verbreitung global: Europäisch
Ökologische Zeigerwerte nach Landolt & al. (2010)
BodenfaktorenKlimafaktorenSalztoleranzFeuchtezahl Fmässig trocken; Feuchtigkeit mässig wechselnd (± 1-2 Stufen)Lichtzahl LhellSalzzeichen--Reaktionszahl Rneutral bis basisch (pH 5.5-8.5)Temperaturzahl Tunter-montan und ober-kollinNährstoffzahl NnährstoffarmKontinentalitätszahl Ksubkontinental (niedrige relative Luftfeuchtigkeit, grosse Temperaturschwankungen, eher kalte Winter)
Volksname Deutscher Name: Gewöhnliche Pyramiden-Kammschmiele Nom français: Koelérie pyramidale
description: Published as part of Konrad Lauber, Gerhart Wagner & Andreas Gygax, 2018, Flora Helvetica - Poaceae, pp. 1458-1570 in Flora Helvetica, Bern :Haupt Verlag on page 1556
Biodiversity survey of marine invertebrates of Helgoland: Anthozoa (Cnidaria)
Creators: name: Herde, Max
name: Rose, Lucille
Publisher: name: Humboldt-Universität zu Berlin
Year: 2024
Subjects: subject: Cnidaria
subject: Anthozoa
subject: Hexacorallia
subject: Octocorallia
subject: biodiversity
subject: species richness
subject: marine
subject: community composition
subject: field study
subject: rocky shore
subject: Tiefe Rinne
subject: North Sea
subject: Helgoland
subject: 570 Biologie

description: Global warming, pollution and other anthropogenic influences severely affect species richness and alter community structure and composition of marine environments globally. To better understand how marine invertebrate communities changed over the last centuries in the southern North Sea, we conducted a field study on and around the shores of the German island of Helgoland to observe selected marine environments. This study focuses on Anthozoa, a sessile group of cnidarians, because of their sensitivity to environmental changes such as global warming and pollution. We observed which anthozoan species are currently present in the rocky shore and the offshore benthic environment “Tiefe Rinne” of Helgoland and how this compares to previous estimates (37-87 years ago). The two localities observed are inhabited by different species, except one species (Sagartiogeton laceratus) that was found in both environments. Our results show that the community composition of anthozoans changed in both environments over time. While in the „Tiefe Rinne“ the species richness remained the same, the species richness in the rocky shore decreased. Our results could be explained by the displacement of certain anthozoan species due to anthropogenic impacts and the introduction of neobiotic taxa through increased global shipping. However, sampling was only conducted for a short period of time, and the possibility of misidentifications cannot be excluded. Further sampling and the addition of molecular data to improve species identification, would greatly enhance this study.
Additional file 6: Figure S4. of A robust (re-)annotation approach to generate unbiased mapping references for RNA-seq-based analyses of differential expression across closely related species
Creators: name: Torres-Oliva, Montserrat
name: Almudi, Isabel
name: McGregor, Alistair
name: Posnien, Nico
Publisher: name: Figshare
Year: 2016
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Correlation plots for RPKM-voom-limma. Relation between length differences and the log2-fold change. Comparisons between D. mauritiana and D. melanogaster are shown on the left side, comparisons between D. mauritiana and D. simulans are shown on the right side. On the first row, the published annotations are used as mapping references; on the second row, the directly re-annotated references are used as mapping references and on the third row, the reciprocally re-annotated references are used. Dots represent genes with length difference > 49 bp in these annotations. Genes significantly differentially expressed in the presented analysis (padj
Book review_Susan Ashbrook Harvey, Margaret Mullett, 'Knowing Bodies, Passionate Souls: Sense Perceptions in Byzantium'
Creators: name: Cristina Stalteri
Publisher: name: Edizioni dell'Orso
Year: 2018
Subjects: subject: History
subject: Art history
subject: Anthropology
subject: FOS: Sociology

description: Book review to Susan Ashbrook Harvey, Margaret Mullett, Knowing Bodies, Passionate Souls: Sense Perceptions inByzantium, Washington, DC, Dumbarton Oaks Research Library and Collection – Harvard University Press,2017 (Dumbarton Oaks Byzantine Symposia and Colloquia) in "MEG" 18, 2018, pp. 432-433.
Evolution of the Northeast zone breccia body, Mount Polley mine, British Columbia
Creators: name: Jackson, Meghan Lea
Publisher: name: University of British Columbia
Year: 2009

description: The Mount Polley deposit in north-central British Columbia is a Cu-Au porphyry system related to alkaline magmatism. The deposit is composed of numerous discrete zones of Cu-Au mineralization related to bodies of hydrothermal breccia, including the Northeast zone which hosted a pre-mining proven and probable reserve of approximately 11 Mt of ore averaging 0.88% Cu and 0.28 g/t Au. The polylithic breccia body at the Northeast zone is irregular in shape and intruded by multiple generations of post-mineral dykes. Post-mineral faults cut the breccia, making the original breccia geometry unclear. 11,000 meters of core logging along two vertical sections perpendicular to the long axis of the orebody show that a significant percentage (locally >50%) of the breccia is composed of K-feldspar-phyric monzonite porphyry clasts. Many of these have globular shapes, implying that this material was ductile at the time of brecciation. Cu-sulfides are most abundant in and immediately above zones containing the greatest concentration of K feldspar-phyric monzonite porphyry clasts. This relationship suggests that the fluids responsible for both mineralization and brecciation originated during this phase of intrusion. Most of the Cu-Au-bearing sulfide minerals form hydrothermal chemical infill in the breccia. Where fine-grained clastic material is abundant or where movement of clasts was minimal, sulfides are generally less abundant or absent. The entire breccia body of the Northeast Zone at Mount Polley appears to be the result of a single brecciation event. Variation in breccia character within the body is attributable to variations in fluid flux, pre-existing rock character, and fluidization processes. Furthermore, the permeability structure established during the brecciation event exerted the fundamental control over ore distribution within the breccia body.
Additional file 14: Figure S3. of Comparative expression profiling reveals a role of the root apoplast in local phosphate response
Creators: name: Hoehenwarter, Wolfgang
name: MĂśnchgesang, Susann
name: Neumann, Steffen
name: Majovsky, Petra
name: Abel, Steffen
name: MĂźller, Jens
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: spCCA analysis. (A) Shown are the experimental design factors used for the supervised correlation analysis. (B, C, and D) Canonical variables (CV) of the spCCA analysis representing a subset of transcripts/proteins that showed maximum correlation with the illustrated patterns generated by the spCCA algorithm. CVs in B and C are also shown in Fig.Â 4 (see also Additional file 13: Table S11). (PDF 961 kb)
Koeleria pyramidata
Creators: name: Konrad Lauber
name: Gerhart Wagner
name: Andreas Gygax
Publisher: name: Haupt Verlag
Year: 2018
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Poales
Poaceae
Koeleria
Koeleria pyramidata

description: Koeleria pyramidata aggr.
Artbeschreibung: 10-80 cm hoch, Horste bildend. Blätter bis 4 mm breit, flach oder eingerollt. Blatthäutchen 0,5-1 mm lang, gestutzt. Blütenstand eine dichte, schlanke Rispe. Ährchen 2-5 blütig. Die beiden Hüllspelzen +/- gleich lang, gekielt und spitz, breit hautrandig, die unterste Deckspelze nicht überragend. Deckspelzen spitz, hautrandig, meist unbegrannt.
Ökologische Zeigerwerte nach Landolt & al. (2010)
BodenfaktorenKlimafaktorenSalztoleranzFeuchtezahl F--Lichtzahl L--Salzzeichen--Reaktionszahl R--Temperaturzahl T--Nährstoffzahl N--Kontinentalitätszahl K--
Volksname Deutscher Name: Pyramiden-Kammschmiele Nom français: Koelérie pyramidale Nome italiano: Paleo alpino
description: Published as part of Konrad Lauber, Gerhart Wagner & Andreas Gygax, 2018, Flora Helvetica - Poaceae, pp. 1458-1570 in Flora Helvetica, Bern :Haupt Verlag on page 1556
Additional file 3: Figure S1. of A robust (re-)annotation approach to generate unbiased mapping references for RNA-seq-based analyses of differential expression across closely related species
Creators: name: Torres-Oliva, Montserrat
name: Almudi, Isabel
name: McGregor, Alistair
name: Posnien, Nico
Publisher: name: Figshare
Year: 2016
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Correlation plots for DESeq2 using direct counts. Relation between length differences and the log2-fold change. Comparisons between D. mauritiana and D. melanogaster are shown on the left side, comparisons between D. mauritiana and D. simulans are shown on the right side. On the first row, the published annotations are used as mapping references; on the second row, the directly re-annotated references are used as mapping references and on the third row, the reciprocally re-annotated references are used. Dots represent genes with length difference > 49 bp in these annotations. Genes significantly differentially expressed in the presented analysis (padj
Fracture reactivation and gold mineralization in the epithermal environment : structural evolution of the Endeavour 42 gold deposit, New South Wales, Australia
Creators: name: Henry, Amber Dawn
Publisher: name: University of British Columbia
Year: 2008

description: The development of an open pit mine at the Endeavour 42 (E42) epithermal gold deposit, situated in the Junee-Narromine Volcanic Belt of the Ordovician Macquarie Arc, central New South Wales, has provided a 3D view of the structurally controlled deposit which was hitherto not available due to the paucity of outcrop in the region. Outcropping geological relationships present a complicated history of overprinting structural deformation and vein events, including the spatial characterization of the gold-mineralizing system. Host rocks consisting of interbedded sedimentary and resedimented volcaniclastic facies, trachyandesite and porphyritic andesite lavas and intrusions (coherent and autoclastic facies), intruded by a large diorite sill, were initially tilted and faulted, followed by the emplacement of multiple dyke phases along faults. Economic gold mineralization at E42 is restricted to faults, fault-hosted breccias, and veins, and was deposited over a period spanning two distinct structural regimes. Early gold-bearing veins are steeply dipping and interpreted as forming coevally along two sets of faults and dykes within a tensional stress regime. High grade fault-hosted, hydrothermally cemented breccia intervals are included temporally with early gold-bearing veins based on comparable mineralogy and steep, fault parallel orientations. Crosscutting the early steep gold-bearing vein sets are two populations of coeval inclined gold-bearing veins, dipping moderately to the southwest and northwest, respectively, which formed in a compressional stress regime with tension directed subvertically. The E42 epithermal deposit likely developed in the period of overall crustal extension, ca. 443-433 Ma, following Phase 1 of the Late Ordovician – Early Silurian Benambran Orogeny. The generation of permeability, styles of fracture propagation, and the reactivation of pre-existing planes of weakness in the rock package are key factors in the development and current geometry of the E42 gold deposit. High grade veins and faults are commonly flanked by sericite-quartz ± carbonate alteration haloes, which exhibit consistent geochemical patterns for metals and pathfinder elements, both laterally away from structures, and vertically within the deposit. Au, Ag, As, Hg, Sb, Tl, Cu, Pb, and Zn, all display increasing concentrations towards high-grade structures, as well as higher up in the epithermal system, with varying dispersion haloes.
A new benzoquinone and a new stilbenoid from Paphiopedilum exul (Ridl.) Rolfe
Creators: name: Lertnitikul, Nonthalert
name: Teerasukpimol, Ladawan
name: Aekanantakul, Pattatorn
name: Pooreecharurot, Naphatsawan
name: Sukrong, Suchada
name: Boonyong, Cherdsak
name: Poldorn, Preeyaporn
name: Rungrotmongkol, Thanyada
name: Sukandar, Edwin Risky
name: Aonbangkhen, Chanat
name: Suttisri, Rutt
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Pharmacology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: One new alkyl benzoquinone, paphionone (1), one new trans-stilbenoid, (E)-6,5′-dihydroxy-2,3′-dimethoxystilbene (2), and eight known stilbenoids and flavonoids (3-10) were isolated from the leaves and roots of Paphiopedilum exul (Orchidaceae). Their chemical structures were determined based on IR, ECD, MS and NMR analyses. Cytotoxicity of all isolated compounds towards human hepatocellular carcinoma (HepG2) cell line was examined in vitro by MTT assay. The para-hydroxybenzyl substituted stilbene 10 was potently cytotoxic to the cancer cells, with an IC50 value of 4.80 ± 1.10 μM (selectivity index = 20.83). All compounds were non-toxic to normal human embryo fibroblast (OUMS-36) cell line.
Additional file 1: Table S1. of
                     SPATA5 mutations cause a distinct autosomal recessive phenotype of intellectual disability, hypotonia and hearing loss
Creators: name: Buchert, Rebecca
name: Nesbitt, Addie
name: Tawamie, Hasan
name: Krantz, Ian
name: Livija Medne
name: Helbig, Ingo
name: Matalon, Dena
name: AndrĂŠ Reis
name: Santani, Avni
name: Sticht, Heinrich
name: Jamra, Rami Abou
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Computational Biology

description: Comparison of phenotypes of individuals with mutations in SPATA5. (DOCX 15 kb)
Additional file 1: of Identification of gene-drug interactions that impact patient survival in TCGA
Creators: name: Spainhour, John
name: Qiu, Peng
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy
subject: Hematology
subject: 60506 Virology

description: This document contains descriptions of all material located in Additional file 2 as well as descriptions of how to access data used in this analysis. A more indepth description of the PGAM1-Bevacizumab interaction is also included. (DOCX 59 kb)
Koeleria vallesiana Gaudin
Creators: name: Konrad Lauber
name: Gerhart Wagner
name: Andreas Gygax
Publisher: name: Haupt Verlag
Year: 2018
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Poales
Poaceae
Koeleria
Koeleria vallesiana

description: Koeleria vallesiana (Honck.) Gaudin
Artbeschreibung: 10-40 cm hoch. Die grundständigen Blattscheiden in ein dichtes, den Stängel umschliessendes Fasernetz zerfallend (nur bei dieser K. -Art). Blätter meist weniger als 1 mm breit und eingerollt, kahl. Blatthäutchen ca. 1 mm lang, gestutzt. Blütenstand eine ährenartige Rispe, meist dicht, 3-6 cm lang. Ährchen 5-6 mm lang, 3-5 blütig. Beide Hüllspelzen gleich lang, gekielt und spitz, hautrandig, fein borstig behaart. Deckspelzen spitz, unbegrannt.
Blütezeit: 5-7
Standort und Verbreitung in der Schweiz: Trockenwiesen, auf Kalk / kollin-subalpin / VS, VD, NE, BE
Verbreitung global: Westmediterran
Ökologische Zeigerwerte nach Landolt & al. (2010)
BodenfaktorenKlimafaktorenSalztoleranzFeuchtezahl Fsehr trockenLichtzahl Lsehr hellSalzzeichen--Reaktionszahl Rneutral bis basisch (pH 5.5-8.5)Temperaturzahl Tkollin (Laubmischwälder mit Eichen)Nährstoffzahl Nsehr nährstoffarmKontinentalitätszahl Kkontinental (sehr niedrige Luftfeuchtigkeit, sehr grosse Temperaturschwankungen, kalte Winter)
Volksname Deutscher Name: Walliser Kammschmiele Nom français: Koelérie du Valais Nome italiano: Paleo del Vallese
description: Published as part of Konrad Lauber, Gerhart Wagner & Andreas Gygax, 2018, Flora Helvetica - Poaceae, pp. 1458-1570 in Flora Helvetica, Bern :Haupt Verlag on page 1556
MOESM1 of The binding specificity of Translocated in LipoSarcoma/FUsed in Sarcoma with lncRNA transcribed from the promoter region of cyclin D1
Creators: name: Ryoma Yoneda
name: Suzuki, Shiho
name: Mashima, Tsukasa
name: Kondo, Keiko
name: Nagata, Takashi
name: Katahira, Masato
name: Kurokawa, Riki
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 1. Figure S1. The full length sequence of pncRNA-D. Figure S2. The binding between full-length TLS, TLS-4 and 5 with Random 30 nt RNA. Figure S3. A representative fitted curve for the titration experiment by NMR.
Additional file 2: of Identifying the determinants of use of the G&G interventions for older adults in health and social care: protocol of a multilevel approach
Creators: name: Kuiper, Daphne
name: Goedendorp, Martine
name: Sanderman, Robbert
name: Sijmen Reijneveld
name: Nardi Steverink
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: Computational Biology

description: Time plan G&G-implementation study.
Mycetoma MicroImage: Detect and classify
Creators: name: Ali, Hyam
name: Alhesseen, Sahar
name: Elkhair, Lamis
name: Jennane, Rachid
name: Fahal, Ahmed
Publisher: name: Zenodo
Year: 2024
Subjects: Mycetoma
Diagnosis
Hitopathology
Microscopic images
Detection
Classifcation
MICCAI 2024 challenges

description: Mycetoma is a chronic granulomatous inflammatory disease reported worldwide but endemic in tropical and subtropical areas. It was included in the World Health Organization (WHO) Neglected Tropical Disease (NTD) list in 2016. Mycetoma can be caused either by certain types of bacteria (Actinomycetoma, AcM) or fungi (Eumycetoma, EuM). Identification of mycetoma types plays a significant role in the treatment of mycetoma. An incorrect diagnosis of mycetoma can seriously affect the patient and the disease prognosis and outcome.

The proposed challenge will explore the feasibility of using AI to effectively diagnose mycetoma from histopathological microscopic images of mycetoma grains. This challenge is the first of its kind to address mycetoma diagnosis. It aims to promote the development of AI and computer vision solutions for the automatic detection of mycetoma infection in histopathological microscopic images and provides a classification of the disease as EuM or AcM.

Researchers and data scientists from around the world are invited to participate in this challenge to advance the early diagnosis and management of mycetoma, ultimately improving patient outcomes and healthcare in affected regions.
Rheology of porous rhyolite
Creators: name: Robert, Geneviève
Publisher: name: University of British Columbia
Year: 2008

description: I describe an experimental apparatus used to perform deformation experiments relevant to volcanology. The apparatus supports low-load, high-temperature deformation experiments under dry and wet conditions on natural and synthetic samples. The experiments recover the transient rheology of complex (melt ± porosity ± solids) volcanic materials during uniaxial deformation. The key component to this apparatus is a steel cell designed for high-temperature deformation experiments under controlled water pressure. Experiments are run under constant displacement rates or constant loads; the range of accessible experimental conditions include: 25 - 1100 °C, load stresses 0 to 150 MPa, strain rates 10⁻⁶ to 10⁻² s⁻¹, and fluid pressures 0-150 MPa. I present a suite of high-temperature, uniaxial deformation experiments performed on 25 by 50 mm unjacketed cores of porous Φ∼0.8) sintered rhyolitic ash. The experiments were performed at, both, atmospheric (dry) and elevated water pressure conditions (wet). Dry experiments were conducted mainly at 900 °C, but also included a suite of lower temperature experiments at 850, 800 and 750 °C. Wet experiments were performed at ∼650 °C under water pressures of 1, 2.5, 3, and 5 MPa, and at a fixed PH2O of ∼2.5 MPa for temperatures of ∼385, 450, and 550 °C. During deformation, strain is manifest by shortening of the cores, reduction of porosity, flattening of ash particles, and radial bulging of the cores. The continuous reduction of porosity leads to a dynamic transient strain-dependent rheology and requires strain to be partitioned between a volume (porosity loss) and a shear (radial bulging) component. The effect of increasing porosity is to expand the window for viscous deformation for dry melts by delaying the onset of brittle deformation by ∼50 °C (875 °C to 825 °C). The effect is more pronounced in hydrous melts (∼0.67 — 0.78 wt. % H₂0) where the viscous to brittle transition is depressed by ∼140 to 150 °C. Increasing water pressure also delays the onset of strain hardening due to compaction-driven porosity reduction. These rheological data are pertinent to volcanic processes where high-temperature porous magmas I liquids are encountered (e.g., magma flow in conduits, welding of pyroclastic materials).
MOESM1 of Systematic difference between first-motion and waveform-inversion solutions for shallow offshore earthquakes due to a low-angle dipping slab
Creators: name: Takemura, Shunsuke
name: Shiomi, Katsuhiko
name: Kimura, Takeshi
name: Saito, Tatsuhiko
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Figure S1. First-motion solutions of aftershocks of the 2016 Off Mie earthquake. Focal spheres with magnitudes of 2.5–3.4 were plotted referring the Hi-net catalog (last accessed 19 April 2016). Location of the epicenter of the 2016 Off Mie earthquake is given by the yellow star. Figure S2. Same as Fig. 1b but for four additional earthquakes (Events A, B, D and E of Table S1). Figure S3. 1D velocity structure model by Ukawa et al. [1984]. Red and green lines are depth variations of P- and S-wave velocities, respectively. Figure S4. Theoretical travel using 1D velocity structure model by Ukawa et al. [1984]. Table S1. Parameters of earthquake used in this study. ϕ S , δ and λ are strike, dip, and rake angles of focal mechanism, respectively. Table S2. Physical parameters for each layer. P- and S-wave velocities (V P , V S ), densities (ρ), and anelastic attenuation (Q P , Q S ) of the JIVSM [Koketsu et al. 2012].
Additional file 5: Figure S1. of Comparative genomics of Pseudomonas fluorescens subclade III strains from human lungs
Creators: name: Brittan Scales
name: Erb-Downward, John
name: Huffnagle, Ian
name: LiPuma, John
name: Huffnagle, Gary
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Cancer

description: GC content calculated using the online GC profile tool [86]. GC content displayed on y-axis and position in draft genome displayed on x-axis. Arrows indicate GC islands that have been further analyzed via NCBI BLASTn, results in Additional file 6: Table S5. (PDF 559 kb)
Additional file 1: of Primary health care teams put to the test a cross-sectional study from Austria within the QUALICOPC project
Creators: name: Hoffmann, Kathryn
name: George, Aaron
name: Dorner, Thomas
name: Süß, Katharina
name: Schäfer, Willemijn
name: Maier, Manfred
Publisher: name: Figshare
Year: 2015
Subjects: subject: Cell Biology
subject: Ecology
subject: FOS: Biological sciences
subject: Science Policy

description: Comparison of demographics of the GPs in the sample with the Austrian GP population. (DOCX 16 kb)
Additional file 1: Table S1. of Comparative genomics of Pseudomonas fluorescens subclade III strains from human lungs
Creators: name: Brittan Scales
name: Erb-Downward, John
name: Huffnagle, Ian
name: LiPuma, John
name: Huffnagle, Gary
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology

description: Assembly statistics of the P. fluorescens strains in this study. The paired end reads from Illumina HiSeq were de novo assembled using the DNAstar SeqMan NGen. (PDF 387 kb)
Additional file 1: of From grief, guilt pain and stigma to hope and pride â   a systematic review and meta-analysis of mixed-method research of the psychosocial impact of stillbirth
Creators: name: Burden, Christy
name: Bradley, Stephanie
name: Storey, Claire
name: Ellis, Alison
name: Heazell, Alexander
name: Downe, Soo
name: Cacciatore, Joanne
name: Siassakos, Dimitrios
Publisher: name: Figshare
Year: 2016
Subjects: Biotechnology
Science Policy

description: Demographic information of included studies and intensity effect sizes (IES). (DOC 298Â kb)
Additional file 9: Figure S3. of Comparative genomics of Pseudomonas fluorescens subclade III strains from human lungs
Creators: name: Brittan Scales
name: Erb-Downward, John
name: Huffnagle, Ian
name: LiPuma, John
name: Huffnagle, Gary
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Phylogenetic tree inferred from the nucleotide acid sequences of vasH homologues from representative environmental and clinical subclade III strains. Mauve algorithm used for alignment [88]. A506 is a representative clinical strain; AU6026, AU10973, AU14440 are representative clinical strains. (PDF 346 kb)
MOESM1 of A series of patients with minimal change nephropathy treated with rituximab during adolescence and adulthood
Creators: name: Dekkers, Marinus
name: Groothoff, Jaap
name: Zietse, Robert
name: Betjes, Michiel
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Cancer
subject: Plant Biology

description: Additional file 1: Table S1. Patients characteristics, treatment, and complications.
Leersia oryzoides Sw.
Creators: name: Konrad Lauber
name: Gerhart Wagner
name: Andreas Gygax
Publisher: name: Haupt Verlag
Year: 2018
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Poales
Poaceae
Leersia
Leersia oryzoides

description: Leersia oryzoides (L.) Sw.
Artbeschreibung: 50-150 cm hoch, am Grund oft niederliegend, nur an den Knoten behaart, oft ästig. Blätter bis 1 cm breit, Rand sehr rau, gelbgrün. Blatthäutchen ca. 1 mm lang. Blütenstand eine lockere, bis 20 cm lange Rispe mit dünnen, geschlängelten Ästen, oft in der obersten Blattscheide +/- eingeschlossen. Ährchen einblütig, flach, ca. 5 mm lang und 2 mm breit, ohne Hüllspelzen, als Ganzes abfallend. Deckspelze breit, hart, meist borstig, ohne Granne.
Blütezeit: 8-9
Standort und Verbreitung in der Schweiz: Sumpfgräben, Torfstiche / kollin-montan / M, vereinzelt J und A
Verbreitung global: Eurasiatisch-nordamerikanisch
Ökologische Zeigerwerte nach Landolt & al. (2010)
BodenfaktorenKlimafaktorenSalztoleranzFeuchtezahl Füberschwemmt, bzw. unter Wasser; Feuchtigkeit stark wechselnd (mehr als ± 2 Stufen)Lichtzahl LhellSalzzeichen--Reaktionszahl Rschwach sauer bis neutral (pH 4.5-7.5)Temperaturzahl Tkollin (Laubmischwälder mit Eichen)Nährstoffzahl NnährstoffreichKontinentalitätszahl Ksubozeanisch (hohe Luftfeuchtigkeit, geringe Temperaturschwankungen, eher milde Winter)
Volksname Deutscher Name: Wilder Reis, Reisquecke Nom français: Léersie sauvage Nome italiano: Riso selvatico
description: Published as part of Konrad Lauber, Gerhart Wagner & Andreas Gygax, 2018, Flora Helvetica - Poaceae, pp. 1458-1570 in Flora Helvetica, Bern :Haupt Verlag on page 1556
Additional file 1: of The receptor for advanced glycation end products and risk of peripheral arterial disease, amputation or death in type 2 diabetes: a population-based cohort study
Creators: name: Malmstedt, Jonas
name: Kärvestedt, Lars
name: Swedenborg, Jesper
name: Brismar, Kerstin
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Science Policy

description: Table S1.Baseline characteristics for all patients in the original cohort. Data are means and SD (standard deviation) or n (%). a PAD defined as amputations or loss of foot pulse. b Albuminuria >300 mg/L or S-creatinine above 100 mmol/L in women and 110 mm/L in men. c Two patients had undergone both major and minor amputations. d P = .073 (Fisher’s Exact Test), e P = .072 (Fisher’s Exact Test), f P = .059 (Mann-Whitney U).
Seismic and mechanical attributes of lithospheric deformation and subduction in western Canada
Creators: name: Audet, Pascal
Publisher: name: University of British Columbia
Year: 2008

description: Convergent continental margins are regions of intense deformation caused by the interaction of oceanic plates with continents. The spatial extent of deformation is broadly commensurate with the specific time scale of the causative phenomenon. For example, subduction-related short-term deformation is limited to <200 km from the margin, whereas long-term plate convergence cause deformation over ∼1000 km landward. Deformation is thus manifested in multiple ways, with attributes depending on the scale of measurement. In this thesis we investigate the use of two geophysical approaches in the study of deformation: 1) The analysis of potential-field anomalies to derive estimates of the elastic thickness (Te) of the lithosphere, and 2) The structural study of past and present subduction systems using seismic observations and modelling. Both approaches involve the development of appropriate methodologies for data analysis and modelling, and their application to the western Canadian landmass. Our findings are summarized as follows: 1) We develop a wavelet-based technique to map variations in Te and its anisotropy; 2) We show how a step-wise transition in Te and its anisotropy from the Cordillera to the Craton is a major factor influencing lithospheric deformation; 3) We implement a waveform modelling tool that includes the effects of structural heterogeneity and anisotropy for teleseismic applications, and use it to model the signature of a fossil subduction zone in a Paleoproterozoic terrane; 4) We use teleseismic recordings to map slab edge morphology in northern Cascadia and show how slab window tectonism and slab stretching led to the creation of the oceanic Explorer plate; 5) We use seismic signals from the subducting oceanic crust to calculate elevated Poisson’s ratio and infer high pore-fluid pressures and a low-permeability plate boundary within the forearc region of northern Cascadia.