cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1 of Association between single-nucleotide polymorphism rs145497186 related to NDUFV2 and lumbar disc degeneration: a pilot case–control study
Creators: name: Wang, Ziyu
name: Chen, Lu
name: Li, Qinghui
name: Zhang, Hengshuo
name: Shan, Yu
name: Qi, Linzeng
name: Wang, Hongliang
name: Chen, Yunzhen
Publisher: name: figshare
Year: 2022
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Mental Health

description: Additional file 1: Table S1. General data of case and control group.
Additional file 4: Text 2. of Habitat properties are key drivers of Borrelia burgdorferi (s.l.) prevalence in Ixodes ricinus populations of deciduous forest fragments
Creators: name: Ehrmann, Steffen
name: Ruyts, Sanne
name: Scherer-Lorenzen, Michael
name: Bauhus, Jürgen
name: Brunet, Jörg
name: Cousins, Sara
name: Deconchat, Marc
name: Decocq, Guillaume
name: Frenne, Pieter De
name: Pallieter De Smedt
name: Diekmann, Martin
name: Gallet-Moron, Emilie
name: Gärtner, Stefanie
name: Hansen, Karin
name: Kolb, Annette
name: Lenoir, Jonathan
name: Lindgren, Jessica
name: Naaf, Tobias
name: Paal, Taavi
name: Panning, Marcus
name: Prinz, Maren
name: Valdés, Alicia
name: Verheyen, Kris
name: Wulf, Monika
name: Liira, Jaan
Publisher: name: figshare
Year: 2018
Subjects: subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Computational Biology

description: Details on how correlation factors were derived and what the name components of the internal variables mean. (DOCX 15 kb)
MOESM4 of Gene stacking of multiple traits for high yield of fermentable sugars in plant biomass
Creators: name: Aznar, Aude
name: Chalvin, Camille
name: Shih, Patrick
name: Maimann, Michael
name: Ebert, Berit
name: Birdseye, Devon
name: LoquĂŠ, Dominique
name: Scheller, Henrik
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Molecular Biology
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Additional file 4. Summary of jStack constructs.
Additional file 3 of Association between single-nucleotide polymorphism rs145497186 related to NDUFV2 and lumbar disc degeneration: a pilot case–control study
Creators: name: Wang, Ziyu
name: Chen, Lu
name: Li, Qinghui
name: Zhang, Hengshuo
name: Shan, Yu
name: Qi, Linzeng
name: Wang, Hongliang
name: Chen, Yunzhen
Publisher: name: figshare
Year: 2022
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Mental Health

description: Additional file 3: Table S3. Characteristics of Case Group associated with VAS.
Additional file 3: Text 1. of Habitat properties are key drivers of Borrelia burgdorferi (s.l.) prevalence in Ixodes ricinus populations of deciduous forest fragments
Creators: name: Ehrmann, Steffen
name: Ruyts, Sanne
name: Scherer-Lorenzen, Michael
name: Bauhus, Jürgen
name: Brunet, Jörg
name: Cousins, Sara
name: Deconchat, Marc
name: Decocq, Guillaume
name: Frenne, Pieter De
name: Pallieter De Smedt
name: Diekmann, Martin
name: Gallet-Moron, Emilie
name: Gärtner, Stefanie
name: Hansen, Karin
name: Kolb, Annette
name: Lenoir, Jonathan
name: Lindgren, Jessica
name: Naaf, Tobias
name: Paal, Taavi
name: Panning, Marcus
name: Prinz, Maren
name: Valdés, Alicia
name: Verheyen, Kris
name: Wulf, Monika
name: Liira, Jaan
Publisher: name: figshare
Year: 2018
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Computational Biology

description: Methods: technical details. (DOCX 16 kb)
Nonlocality of local Andreev conductances as a probe for topological Majorana wires
Creators: name: Dourado, Rodrigo A.
name: Penteado, Poliana H.
name: Egues, J. Carlos
Publisher: name: arXiv
Year: 2023
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We propose a protocol based only on local conductance measurements for distinguishing trivial from topological phases in realistic three-terminal superconducting nanowires coupled to normal leads, capable of hosting Majorana zero modes (MZMs). By using Green functions and the scattering matrix approach, we calculate the conductance matrix and the local density of states (LDOS) as functions of the asymmetry in the couplings to the left ($Γ_L$) and right ($Γ_R$) leads. In the trivial phase, we find that the zero-bias local conductances are distinctively affected by variations in $Γ_R$ (for fixed $Γ_L$): while $G_{LL}$ is mostly constant, $G_{RR}$ decays exponentially as $Γ_R$ is decreased. In the topological phase, surprisingly, $G_{LL}$ and $G_{RR}$ are both suppressed with $G_{LL} \sim G_{RR}$. This \textit{nonlocal} suppression of $G_{LL}$ with $Γ_R$ scales with the MZM hybridization energy $\varepsilon_m$ and arises from the emergence of a dip in the LDOS near zero energy at the left end of the wire, which affects the local Andreev reflection. We further exploit this nonlocality of the local Andreev processes and the gate-controlled suppression of the LDOS by proposing a Majorana-based transistor. Our results hold for zero and low electron temperatures $T<20$ mK. For $T = 30, 40$ mK, $G_{LL}$ and $G_{RR}$ become less correlated. As an additional nonlocal fingerprint of the topological phase at higher $T$'s, we predict modulations in our \textit{asymmetric} conductance deviation $δG^{asym}_{LL}= G_{LL}^{Γ_R = Γ_L} - G_{LL}^{Γ_R \ll Γ_L}$ that remains commensurate with the Majorana oscillations in $\varepsilon_m$ over the range $30
description: 20 pages; 5 figures in the main text; 17 figures in the appendices. Accepted by Physical Review B
Additional file 2 of Association between single-nucleotide polymorphism rs145497186 related to NDUFV2 and lumbar disc degeneration: a pilot case–control study
Creators: name: Wang, Ziyu
name: Chen, Lu
name: Li, Qinghui
name: Zhang, Hengshuo
name: Shan, Yu
name: Qi, Linzeng
name: Wang, Hongliang
name: Chen, Yunzhen
Publisher: name: figshare
Year: 2022
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Mental Health

description: Additional file 2: Table S2. Hardy-Weinberg Equilibrium Test of rs28742109, rs12955018, rs987850, rs8093805, rs12965084 and rs145497186 that related to NDUFV2.
Additional file 1:
Creators: name: Joar Björk
name: Juth, Niklas
name: Lynøe, Niels
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy
subject: Plant Biology

description: Questionnaire (English) This is an English translation (made by the first author) of the questionnaire sent out to all respondents. The questionnaire version sent out to physicians included one additional question (regarding field of medical specialization) as opposed to the version sent out to members of the general public. This question is marked with an asterisk (*) for clarity. (DOCX 17 kb)
Dissipative Dynamics in Open Fermionic Chains
Creators: name: Karanikas, A. I.
name: Pavlou, G. E.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Physics (quant-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: By merging the Feynman-Vernon's approach with the out-of-equilibrium Keldysh-Schwinger formalism, we construct the reduced generating functional through which all the time-dependent correlation functions of an open fermionic system can be directly derived by applying the appropriate functional derivatives. As a concrete example, we investigate the transverse Ising model, we derive the covariance matrix at the steady state of the system and we investigate its critical behavior.
description: 21 pages, 1 figure
Additional file 2 of Estimating health system opportunity costs: the role of non-linearities and inefficiency
Creators: name: Hernandez-Villafuerte, Karla
name: Zamora, Bernarda
name: Feng, Yan
name: Parkin, David
name: Devlin, Nancy
name: Towse, Adrian
Publisher: name: figshare
Year: 2022
Subjects: Medicine
Biotechnology
Science Policy

description: Additional file 2. Supplementary Material.
MOESM5 of Development of AhMITE1 markers through genome-wide analysis in peanut (Arachis hypogaea L.)
Creators: name: M. Gayathri
name: Shirasawa, Kenta
name: R. Varshney
name: M. Pandey
name: R. Bhat
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Additional file 5: Figure S1. Polymorphism survey for AhTE1131 among the parents of RIL and backcross populations of peanut. [M: 100 bp ladder, 1: DER, 2: VL 1, 3: 110, 4: 110(S), 5: TAG 24, 6: GPBD 4, 7: JL 24, 8: TMV 2, 9: ICGV 86699, 10: ICGV 99005, 11: IL 1 and 12: IL 2].
Quantum acoustics unravels Planckian resistivity
Creators: name: Aydin, Alhun
name: Keski-Rahkonen, Joonas
name: Heller, Eric J.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Strange metals exhibit universal linear-in-temperature resistivity described by a Planckian scattering rate, the origin of which remains elusive. By employing a novel approach inspired by quantum optics, we arrive at the coherent state representation of lattice vibrations: quantum acoustics. Utilizing this nonperturbative framework, we demonstrate that lattice vibrations could serve as active drivers in the Planckian resistivity phenomenon, challenging prevailing theories. By treating charge carriers as quantum wave packets negotiating the dynamic acoustic field, we find that a competition ensues between localization and delocalization giving rise to the previously conjectured universal quantum bound of diffusion, $\hbar/m^{*}$, independent of temperature or any other material parameters. This leads to the enigmatic $T$-linear resistivity over hundreds of degrees, except at very low temperatures. Quantum diffusion also explains why strange metals have much higher electrical resistivity than typical metals. Our work elucidates the critical role of phonons in Planckian resistivity from a new perspective and reconsiders their significance in the transport properties of strange metals.
description: 15 pages, 4 figures
Markov State Models from short non-Equilibrium Simulations - Analysis and Correction of Estimation Bias
Creators: name: Nüske, Feliks
name: Wu, Hao
name: Prinz, Jan-Hendrik
name: Wehmeyer, Christoph
name: Clementi, Cecilia
name: Noé, Frank
Publisher: name: arXiv
Year: 2017
Subjects: subject: Data Analysis, Statistics and Probability (physics.data-an)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Probability (math.PR)
subject: Biological Physics (physics.bio-ph)
subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: Many state of the art methods for the thermodynamic and kinetic characterization of large and complex biomolecular systems by simulation rely on ensemble approaches, where data from large numbers of relatively short trajectories are integrated. In this context, Markov state models (MSMs) are extremely popular because they can be used to compute stationary quantities and long-time kinetics from ensembles of short simulations, provided that these short simulations are in "local equilibrium" within the MSM states. However, in the last over 15 years since the inception of MSMs, it has been controversially discussed and not yet been answered how deviations from local equilibrium can be detected, whether these deviations induce a practical bias in MSM estimation, and how to correct for them. In this paper, we address these issues: We systematically analyze the estimation of Markov state models (MSMs) from short non-equilibrium simulations, and we provide an expression for the error between unbiased transition probabilities and the expected estimate from many short simulations. We show that the unbiased MSM estimate can be obtained even from relatively short non-equilibrium simulations in the limit of long lag times and good discretization. Further, we exploit observable operator model (OOM) theory to derive an unbiased estimator for the MSM transition matrix that corrects for the effect of starting out of equilibrium, even when short lag times are used. Finally, we show how the OOM framework can be used to estimate the exact eigenvalues or relaxation timescales of the system without estimating an MSM transition matrix, which allows us to practically assess the discretization quality of the MSM. Applications to model systems and molecular dynamics simulation data of alanine dipeptide are included for illustration. The improved MSM estimator is implemented in PyEMMA as of version 2.3.
title: Climate (In-) Justice in German Cities? Assessing the Relationship between Land Surface Temperature and Affordability of Housing
Creators: name: Klopfer, Florian
Publisher: name: Conference Proceedings XXIX International Seminar on Urban Form ISUF 2022 Urban Redevelopment and Revitalisation A Multidisciplinary Perspective/Lodz University of Technology Press
Year: 2023
Subjects: Climate justice, Housing affordability, Urban heat island, Urban morphology, Urban structure types

description: Two megatrends cumulate and interact in urban areas: global warming and urbanization. Their combination leads to growing numbers of urbanites affected by negative health impacts. Considering US cities, strong correlations between social indicators like income or race and areas featuring pronounced urban heat island intensities (UHII) are detected. This paper’s objective is to research whether correlations also exist in German cities. The chosen approach relates the affordability of housing (apartment rent as proxy) and land surface temperature (LST) in the seven largest German cities. Results yield no significant correlations between rent levels and LST. Thus, based on the methodology applied and the data used, there is no proof of climate injustice regarding heat hazard and the exposure of different socio-economic groups. One reason might lie in typical German urban morphological structures, e.g., perimeter block development and large housing estates. While high densities, centrality, and fewer urban green characterize the former typology, it is often found in sought-after residential areas and thus relatively hot and costly. The latter consists of large, sparsely distributed structures with vegetation patches in-between, making the surroundings cooler while apartments are often cheaper. The results obtained provide valuable information for planners, real estate development and social politics.
title: ADCO, Grènetier de Cîteaux : comptes (1497-1504) (11 H 1172), f. 00067
Creators: name: de la Côte-d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2019
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: comptes
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Grènetier de Cîteaux : comptes (1497-1504), Archives départementales de la Côte-d'Or, (11 H 1172). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Grènetier de Cîteaux : comptes (1497-1504), Archives départementales de la Côte-d'Or, (11 H 1172), f. 00067, in Projet CBMA - Corpus Burgundiae Medii Aevi \[Ressource en ligne\], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Additional file 1: of A randomized controlled trial of a skills training for oncologists and a communication aid for patients to stimulate shared decision making about palliative systemic treatment (CHOICE): study protocol
Creators: name: I. Henselmans
name: E. Smets
name: J. De Haes
name: M. Dijkgraaf
name: F. De Vos
name: H. Van Laarhoven
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Cell Biology
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Science Policy

description: Instruments main outcome measures (OPTION12 and 4SDM). Instruments used to assess the main outcome (observed shared decision making). (PDF 170Â kb)
The nature of fifty Palermo Swift-BAT hard X-ray objects through optical spectroscopy
Creators: name: Rojas, A. F.
name: Masetti, N.
name: Minniti, D.
name: Jiménez-Bailón, E.
name: Chavushyan, V.
name: Hau, G.
name: McBride, V. A.
name: Bassani, L.
name: Bazzano, A.
name: Bird, A. J.
name: Galaz, G.
name: Gavignaud, I.
name: Landi, R.
name: Malizia, A.
name: Morelli, L.
name: Palazzi, E.
name: Patiño-Álvarez, V.
name: Stephen, J. B.
name: Ubertini, P.
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: We present the nature of 50 hard X-ray emitting objects unveiled through an optical spectroscopy campaign performed at seven telescopes in the northern and southern hemispheres. These objects were detected with Swift-BAT and listed as of unidentified nature in the 54-month Palermo BAT catalogue. In detail, 45 sources in our sample are identified as active galactic nuclei of which, 27 are classified as type 1 (with broad and narrow emission lines) and 18 are classified as type 2 (with only narrow emission lines). Among the broad-line emission objects, one is a type 1 high-redshift quasi-stellar object, and among the narrow-line emission objects, one is a starburst galaxy, one is a X-ray bright optically normal galaxy, and one is a low ionization nuclear emission line region. We report 30 new redshift measurements, 13 confirmations and 2 more accurate redshift values. The remaining five objects are galactic sources: three are Cataclismic Variables, one is a X-ray Binary probably with a low mass secondary star, and one is an active star.
description: 23 pages, 13 figures, accepted for publication in A&A
Additional file 1 of Estimating health system opportunity costs: the role of non-linearities and inefficiency
Creators: name: Hernandez-Villafuerte, Karla
name: Zamora, Bernarda
name: Feng, Yan
name: Parkin, David
name: Devlin, Nancy
name: Towse, Adrian
Publisher: name: figshare
Year: 2022
Subjects: Medicine
Biotechnology
Science Policy

description: Additional file 1. Appendix: Figures of Quantile regression and DEA Results.
Addendum to "Emotion regulation and its association with structural brain alterations across the spectrum of mental health – a machine learning framework for sparse partial least squares"
Creators: name: Leehr, Elisabeth
name: Böhnlein, Joscha
name: Wellms, Sarah Eva-Maria
name: Winter, Nils Ralf
Publisher: name: OSF Registries
Year: 2024
Subjects: subject: Psychiatry and Psychology
subject: Medicine and Health Sciences
subject: Partial Least Squares
subject: Statistical Analysis Protocol
subject: TIP
subject: emotion regulation
subject: machine learning
subject: magnetic resonance imaging

description: In this addendum, the fifth and exploratory hypothesis concerning the relationship between functional magnetic resonance imaging (fMRI) data and clinical diagnosis (as opposed to the relationship between structural MRI data and clinical diagnosis, that was the topic of the first four hypotheses) is described in more detail.
For the related registration, see https://doi.org/10.17605/OSF.IO/9QZD7
Incentives and co-evolution: Steering linear dynamical systems with noncooperative agents
Creators: name: Fabiani, Filippo
name: Simonetto, Andrea
Publisher: name: arXiv
Year: 2023
Subjects: subject: Systems and Control (eess.SY)
subject: Optimization and Control (math.OC)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Mathematics

description: Modern socio-technical systems typically consist of many interconnected users and competing service providers, where notions like market equilibrium are tightly connected to the ``evolution'' of the network of users. In this paper, we model the users' dynamics as a linear dynamical system, and the service providers as agents taking part to a generalized Nash game, whose outcome coincides with the input of the users' dynamics. We thus characterize the notion of co-evolution of the market and the network dynamics and derive dissipativity-based conditions leading to a pertinent notion of equilibrium. We then focus on the control design and adopt the light-touch policy to incentivize or penalize the service providers as little as possible, while steering the networked system to a desirable outcome. We also provide a dimensionality-reduction procedure, which offers network-size independent conditions. Finally, we illustrate our novel notions and algorithms on a simulation setup stemming from digital market regulations for influencers, a topic of growing interest.
Fermi Liquids and the Luttinger Integral
Creators: name: Curtin, O. J.
name: Nishikawa, Y.
name: Hewson, A. C.
name: Crow, D. J. G.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: The Luttinger Theorem, which relates the electron density to the volume of the Fermi surface in an itinerant electron system, is taken to be one of the essential features of a Fermi liquid. The microscopic derivation of this result depends on the vanishing of a certain integral, the Luttinger integral $I_{\rm L}$, which is also the basis of the Friedel sum rule for impurity models, relating the impurity occupation number to the scattering phase shift of the conduction electrons. It is known that non-zero values of $I_{\rm L}$ with $I_{\rm L}=\pmπ/2$, occur in impurity models in phases with non-analytic low energy scattering, classified as singular Fermi liquids. Here we show the same values, $I_{\rm L}=\pmπ/2$, occur in an impurity model in phases with regular low energy Fermi liquid behavior. Consequently the Luttinger integral can be taken to characterize these phases, and the quantum critical points separating them interpreted as topological.
description: 5 pages 7 figures
Additional file 1: Table S1. of ADHD medication in offspring of immigrants â does the income level of the country of parental origin matter?
Creators: name: Arat, Arzu
name: ĂStberg, Viveca
name: BurstrĂśm, Bo
name: Hjern, Anders
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Logistic regression of ADHD diagnosis (DOCX 12 kb)
On free and nearly free arrangements of conics admitting certain ${\rm ADE}$ singularities
Creators: name: Pokora, Piotr
Publisher: name: arXiv
Year: 2023
Subjects: subject: Algebraic Geometry (math.AG)
subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: 14N20, 14C20, 32S22

description: The main purpose of this paper is to provide combinatorial constraints on the constructability of free and nearly free arrangements of smooth plane conics admitting certain ${\rm ADE}$ singularites.
description: 13 pages, this is the final version, including the referee's comments, to be published in Annali dell'Universit\`a di Ferrara (EDGE Volume 2018 - 2022)
title: ADCO, Cartulaire de l'abbaye de Cîteaux dit Cartulare Antiquum t.1 (début XIIIe siècle), Cart. 166 (11 H 64), 136 folios, f. 0034v
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Cartulaire de l'abbaye de Cîteaux dit Cartulare Antiquum t.1 (début XIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 166 (11 H 64), 136 folios, f. 0034v, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de l'abbaye de Cîteaux dit Cartulare Antiquum t.1 (début XIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 166 (11 H 64), 136 folios, f. 0034v, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
de.NBI im Kontext von Methoden der Künstlichen Intelligenz
Creators: name: De.NBI
Publisher: name: Zenodo
Year: 2020

description: Das Deutsche Netzwerk für Bioinformatik Infrastruktur (de.NBI) unterstützt die KI-Offensive der Bundesregierung. Die Sammlung, Bewertung und der geschickte Einsatz von Trainingsdaten ist der Schlüssel für die Entwicklung neuer Methoden der künstlichen Intelligenz und die Übertragung in neue Anwendungsbereiche wie die Biomedizin. de.NBI ist ideal positioniert, in diesen Bereichen Beiträge zu leisten.
MOESM2 of Gene stacking of multiple traits for high yield of fermentable sugars in plant biomass
Creators: name: Aznar, Aude
name: Chalvin, Camille
name: Shih, Patrick
name: Maimann, Michael
name: Ebert, Berit
name: Birdseye, Devon
name: LoquĂŠ, Dominique
name: Scheller, Henrik
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Additional file 2. Monosaccharide composition of stem cell walls of engineered lines. Alcohol-insoluble residue (AIR) of stem cell walls of W- (A) and X- (B) engineered lines, hydrolyzed with trifluoroacetic acid, and analyzed by HPAEC-PAD. Bars: SD, nÂ =Â 3.
Counter-example guided inductive synthesis of control Lyapunov functions for uncertain systems
Creators: name: Masti, Daniele
name: Fabiani, Filippo
name: Gnecco, Giorgio
name: Bemporad, Alberto
Publisher: name: arXiv
Year: 2023
Subjects: subject: Systems and Control (eess.SY)
subject: Optimization and Control (math.OC)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Mathematics

description: We propose a counter-example guided inductive synthesis (CEGIS) scheme for the design of control Lyapunov functions and associated state-feedback controllers for linear systems affected by parametric uncertainty with arbitrary shape. In the CEGIS framework, a learner iteratively proposes a candidate control Lyapunov function and a tailored controller by solving a linear matrix inequality (LMI) feasibility problem, while a verifier either falsifies the current candidate by producing a counter-example to be considered at the next iteration, or it certifies that the tentative control Lyapunov function actually enjoys such feature. We investigate the Lipschitz continuity of the objective function of the global optimization problem solved by the verifier, which is key to establish the convergence of our method in a finite number of iterations. Numerical simulations confirm the effectiveness of the proposed approach.
A Survey on Causal Inference for Recommendation
Creators: name: Luo, Huishi
name: Zhuang, Fuzhen
name: Xie, Ruobing
name: Zhu, Hengshu
name: Wang, Deqing
name: An, Zhulin
name: Xu, Yongjun
Publisher: name: arXiv
Year: 2023
Subjects: subject: Information Retrieval (cs.IR)
subject: FOS: Computer and information sciences

description: Causal inference has recently garnered significant interest among recommender system (RS) researchers due to its ability to dissect cause-and-effect relationships and its broad applicability across multiple fields. It offers a framework to model the causality in recommender systems like confounding effects and deal with counterfactual problems such as offline policy evaluation and data augmentation. Although there are already some valuable surveys on causal recommendations, they typically classify approaches based on the practical issues faced in RS, a classification that may disperse and fragment the unified causal theories. Considering RS researchers' unfamiliarity with causality, it is necessary yet challenging to comprehensively review relevant studies from a coherent causal theoretical perspective, thereby facilitating a deeper integration of causal inference in RS. This survey provides a systematic review of up-to-date papers in this area from a causal theory standpoint and traces the evolutionary development of RS methods within the same causal strategy. Firstly, we introduce the fundamental concepts of causal inference as the basis of the following review. Subsequently, we propose a novel theory-driven taxonomy, categorizing existing methods based on the causal theory employed - namely, those based on the potential outcome framework, the structural causal model, and general counterfactuals. The review then delves into the technical details of how existing methods apply causal inference to address particular recommender issues. Finally, we highlight some promising directions for future research in this field. Representative papers and open-source resources will be progressively available at https://github.com/Chrissie-Law/Causal-Inference-for-Recommendation.
description: Accepted by The Innovation
Quantum algebra of multiparameter Manin matrices
Creators: name: Jing, Naihuan
name: Liu, Yinlong
name: Zhang, Jian
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Algebra (math.QA)
subject: Combinatorics (math.CO)
subject: Rings and Algebras (math.RA)
subject: FOS: Mathematics
subject: Primary: 05E10, Secondary: 17B37, 58A17, 15A75, 15B33, 15A15

description: Multiparametric quantum semigroups $\mathrm{M}_{\hat{q}, \hat{p}}(n)$ are generalization of the one-parameter general linear semigroups $\mathrm{M}_q(n)$, where $\hat{q}=(q_{ij})$ and $\hat{p}=(p_{ij})$ are $2n^2$ parameters satisfying certain conditions. In this paper, we study the algebra of multiparametric Manin matrices using the R-matrix method. The systematic approach enables us to obtain several classical identities such as Muir identities, Newton's identities, Capelli-type identities, Cauchy-Binet's identity both for determinant and permanent as well as a rigorous proof of the MacMahon master equation for the quantum algebra of multiparametric Manin matrices. Some of the generalized identities are also generalized to multiparameter $q$-Yangians.
description: 31 pages; final version
Implementation of radiating aperture field distribution using tensorial metasurfaces
Creators: name: Teniou, Mounir
name: Roussel, Helene
name: Capet, Nicolas
name: Piau, Gerard-Pascal
name: Casaletti, Massimiliano
Publisher: name: arXiv
Year: 2017
Subjects: subject: Classical Physics (physics.class-ph)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: This paper deals with the design of tensorial modulated metasurfaces able to implement a general radiating aperture field distribution. A new aperture synthesis approach is introduced, based on local holography and variable impedance modulation. In particular, it is shown that tensorial metasurfaces can be used to generate general radiating distribution (phase and amplitude). In addition, a step by step algorithm is presented. In order to validate the method, several solutions are presented at 20 GHz which implement aperture distributions able to radiate different beams with general polarization.
description: 13 pages, 15 images
On the relation of the frame-related operators of fusion frame systems
Creators: name: Köhldorfer, Lukas
name: Balazs, Peter
Publisher: name: arXiv
Year: 2023
Subjects: subject: Functional Analysis (math.FA)
subject: FOS: Mathematics

description: Frames have been investigated frequently over the last few decades due to their valuable properties, which are desirable for various applications as well as interesting for theory. Some applications additionally require distributed processing techniques, which naturally leads to the concept of fusion frames and fusion frame systems. The latter consists of a system of subspaces, equipped with local frames on each of them, and a global frame.
 In this paper, we investigate the relations of the associated frame-related operators on all those three levels. For that we provide a detailed investigation on bounded block diagonal operators between Hilbert direct sums. We give the relation of the frame-related operators of the fusion frame and the corresponding frame systems in terms of operator identities. By applying these identities we prove further properties of fusion frame systems.
Additional file 1 of Rapid and simultaneous detection of multiple pathogens in the lower reproductive tract during pregnancy based on loop-mediated isothermal amplification-microfluidic chip
Creators: name: Xu, Xiaofang
name: Jia, Yiguo
name: Li, Ruolin
name: Wen, Yuting
name: Liang, Yuchen
name: Lao, Guangjie
name: Liu, Xiaojuan
name: Zhou, Wei
name: Liu, Huawei
name: Xie, Jiang
name: Wang, Xiaoxia
name: Xu, Wenming
name: Sun, Qun
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1. Detection results of clinical samples using LAMP-Microfluidic Chip.
title: Provenance of "after the fact" harmonised community-based demographic and HIV surveillance data from ALPHA cohorts
Creators: name: Kanjala, C
Publisher: name: London School of Hygiene & Tropical Medicine
Year: 2020

description: Background: Data about data, metadata, for describing Health and Demographic Surveillance System (HDSS) data have often received insufficient attention. This thesis studied how to develop provenance metadata within the context of HDSS data harmonisation - the network for Analysing Longitudinal Population-based HIV/ AIDS data on Africa (ALPHA). Technologies from the data documentation community were customised, among them: A process model - Generic Longitudinal Business Process Model (GLBPM), two metadata standards - Data Documentation Initiative (DDI) and Standard for Data and Metadata eXchange (SDMX) and a data transformations description language - Structured Data Transform Language (SDTL). Methods: A framework with three complementary facets was used: Creating a recipe for annotating primary HDSS data using the GLBPM and DDI; Approaches for documenting data transformations. At a business level, prospective and retrospective documentation using GLBPM and DDI and retrospectively recovering the more granular details using SDMX and SDTL; Requirements analysis for a user-friendly provenance metadata browser. Results: A recipe for the annotation of HDSS data was created outlining considerations to guide HDSS on metadata entry, staff training and software costs. Regarding data transformations, at a business level, a specialised process model for the HDSS domain was created. It has algorithm steps for each data transformation sub-process and data inputs and outputs. At a lower level, the SDMX and SDTL captured about 80% (17/21) of the variable level transformations. The requirements elicitation study yielded requirements for a provenance metadata browser to guide developers. Conclusions: This is a first attempt ever at creating detailed metadata for this resource or any other similar resources in this field. HDSS can implement these recipes to document their data. This will increase transparency and facilitate reuse thus potentially bringing down costs of data management. It will arguably promote the longevity and wide and accurate use of these data.
MOESM1 of Gene stacking of multiple traits for high yield of fermentable sugars in plant biomass
Creators: name: Aznar, Aude
name: Chalvin, Camille
name: Shih, Patrick
name: Maimann, Michael
name: Ebert, Berit
name: Birdseye, Devon
name: LoquĂŠ, Dominique
name: Scheller, Henrik
Publisher: name: figshare
Year: 2018
Subjects: subject: Molecular Biology
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Additional file 1. Phenotypes of W5 and X5 engineered lines.
Additional file 1: of Comparison of outcome measures and complication rates following three different approaches for primary total hip arthroplasty: a pragmatic randomised controlled trial
Creators: name: Talia, Adrian
name: Coetzee, Cassandra
name: Tirosh, Oren
name: Tran, Phong
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Marine Biology
subject: Science Policy

description: SPIRIT checklist. (DOC 121 kb)
Can aid stimulate productivity in Sub-Saharan Africa? A dynamic panel approach
Creators: name: Świerczyńska, Katarzyna
name: Kliber, Agata
name: Świerczyńska, Katarzyna
name: Kliber, Agata
Publisher: name: Unknown
Year: 2019
Subjects: subject: Productivity Analysis
subject: Official development assistance
subject: technical cooperation
subject: Sub-Saharan Africa
subject: technology absorption
subject: total factor productivity

description: The aim of the study was to examine the impact of the official development aid (ODA) on productivity in Sub-Saharan Africa. As development policies embrace different types of aid interventions, we decomposed aid by type of flows and analysed their relations with 24 African states’ productivity (measured by total factor productivity) over the period 1995-2014. Results of the dynamic panel model estimation reveal important implications for the development cooperation policy agenda. It appears that although total value of ODA does not support productivity, technical aid disbursements are associated with higher total factor productivity. This implies that the implementation of technical cooperation enables absorption of technology and contributes to the increase of technology development in recipient Sub-Saharan African countries. The results are fairly robust. Moreover, in this study we confirm that low infrastructure development and shortages in primary education are associated with lower productivity, while trade openness, development of financial market, and political stability - with higher productivity values.
Rebuilding the Habitable Zone from the Bottom Up with Computational Zones
Creators: name: Scharf, Caleb
name: Witkowski, Olaf
Publisher: name: arXiv
Year: 2023
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Biological Physics (physics.bio-ph)
subject: FOS: Physical sciences

description: Computation, if treated as a set of physical processes that act on information represented by states of matter, encompasses biological systems, digital systems, and other constructs, and may be a fundamental measure of living systems. The opportunity for biological computation, represented in the propagation and selection-driven evolution of information-carrying organic molecular structures, has been partially characterized in terms of planetary habitable zones based on primary conditions such as temperature and the presence of liquid water. A generalization of this concept to computational zones is proposed, with constraints set by three principal characteristics: capacity (including computation rates), energy, and instantiation (or substrate, including spatial extent). Computational zones naturally combine traditional habitability factors, including those associated with biological function that incorporate the chemical milieu, constraints on nutrients and free energy, as well as element availability. Two example applications are presented by examining the fundamental thermodynamic work efficiency and Landauer limit of photon-driven biological computation on planetary surfaces and of generalized computation in stellar energy capture structures (a.k.a. Dyson structures). It is suggested that computational zones involving nested structures or substellar objects could manifest unique observational signatures as cool far-infrared emitters. While these latter scenarios are entirely hypothetical, they offer a useful, complementary, introduction to the potential universality of computational zones.
description: 49 pages, 3 figures, published in The Astrobiology Journal June 2024
MOESM3 of Development of AhMITE1 markers through genome-wide analysis in peanut (Arachis hypogaea L.)
Creators: name: M. Gayathri
name: Shirasawa, Kenta
name: R. Varshney
name: M. Pandey
name: R. Bhat
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Additional file 3: Table S3. Genotype-specific AhMITE1 markers.
Quantum state engineering by steering in the presence of errors
Creators: name: Medina-Guerra, E.
name: Kumar, Parveen
name: Gornyi, I. V.
name: Gefen, Yuval
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Physics (quant-ph)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Quantum state engineering plays a vital role in various applications in the field of quantum information. Different strategies, including drive-and-dissipation, adiabatic cooling, and measurement-based steering, have been proposed in the past for state generation and manipulation, each with its upsides and downsides. Here, we address a class of measurement-based state engineering protocols where a sequence of generalized measurements is employed to steer a quantum system toward a desired target state. Previously studied measurement-based protocols relied on idealized procedures and avoided exploration of the effects of various errors stemming from imperfections of experimental realizations and external noise. We employ the quantum trajectory formalism to provide a detailed analysis of the robustness of these steering protocols against various errors. We study a set of errors that can be classified as dynamic or static, depending on whether they remain unchanged while running the protocol. More specifically, we investigate the impact of erroneous choice of system-detector coupling, re-initialization of the detector state following a measurement step, fluctuating steering directions, and environmentally induced errors in the system-detector interaction. We show that the protocol remains fully robust against the erroneous choice of system-detector coupling parameters and presents reasonable robustness against other errors. We employ various quantifiers such as fidelity, trace distance, and linear entropy to characterize the protocol's robustness and provide analytical results. Subsequently, we demonstrate the commutation between the classical expectation value and the time-ordering operator of the exponential of a Hamiltonian with multiplicative white noise, as well as the commutation of the expectation value and the partial trace with respect to detector outcomes.
description: 31 pages of main text + 17 pages of appendices, 13 figures
Disease Progression Modeling and Prediction through Random Effect Gaussian Processes and Time Transformation
Creators: name: Lorenzi, Marco
name: Filippone, Maurizio
name: Alexander, Daniel C.
name: Ourselin, Sebastien
Publisher: name: arXiv
Year: 2017
Subjects: subject: Applications (stat.AP)
subject: FOS: Computer and information sciences

description: The development of statistical approaches for the joint modelling of the temporal changes of imaging, biochemical, and clinical biomarkers is of paramount importance for improving the understanding of neurodegenerative disorders, and for providing a reference for the prediction and quantification of the pathology in unseen individuals. Nonetheless, the use of disease progression models for probabilistic predictions still requires investigation, for example for accounting for missing observations in clinical data, and for accurate uncertainty quantification. We tackle this problem by proposing a novel Gaussian process-based method for the joint modeling of imaging and clinical biomarker progressions from time series of individual observations. The model is formulated to account for individual random effects and time reparameterization, allowing non-parametric estimates of the biomarker evolution, as well as high flexibility in specifying correlation structure, and time transformation models. Thanks to the Bayesian formulation, the model naturally accounts for missing data, and allows for uncertainty quantification in the estimate of evolutions, as well as for probabilistic prediction of disease staging in unseen patients. The experimental results show that the proposed model provides a biologically plausible description of the evolution of Alzheimer's pathology across the whole disease time-span as well as remarkable predictive performance when tested on a large clinical cohort with missing observations.
description: 13 pages, 2 figures
Effect of structural disorder on quantum oscillations in graphite
Creators: name: Camargo, Bruno
name: Kopelevich, Yakov
name: Hubband, Steven
name: Usher, Alan
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We have studied the effect of structural disorder on the de Haas van Alphen (dHvA) and Shubnikov de Haas (SdH) quantum oscillations measured in single-crystal and highly oriented pyrolytic graphite samples at temperatures down to 30 mK and at magnetic fields up to 14 T. The measurements were performed on different samples characterized by means of x-ray diffraction, transmission electron microscopy and atomic-force microscopy techniques. Our results reveal a correlation between the amplitude of quantum oscillations and the surface roughness.