cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Xenarcha (Xenarcha) ivani Belokobylskij & Ku 2025, comb. nov.
Creators: name: Belokobylskij, Sergey A.
name: Ku, Deokseo
Publisher: name: Zenodo
Year: 2025
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Braconidae
Xenarcha
Xenarcha ivani

description: *Xenarcha(Xenarcha)ivani(Belokobylskij, 1986) comb. nov.
Colastes ivani Belokobylskij, 1996: 68.
Colastes (Shawiana) ivani: Belokobylskij 1994: 72; 1998: 156.
Xenarcha ivani: Yu et al. 2016.
Colastes (Xenarcha) ivani: Belokobylskij et al. 2019: 282.
Material examined.
South Korea: [GN] • Namhae-gun, Seo-myeon, Nogu-ri, Temple Mangunsa, Malaise trap, 27.VII–13.VIII.2022 (Deokseo Ku, Jaehyeon Lee, Hyojin Jeong), 1 female (NIBR) • Namhae-gun, Namhae-eup, Asan-ri, 34°51′06.7″N, 127°51′31″E, 19.VI.2022 (S. Belokobylskij), 1 male (SMNE) • Sancheong-gun, Chahwang-myeon, Mt. Hwangmae, (30 km NNW Jinju, forest, h = 800 m), 10.VII.2002 (S. Belokobylskij), 1 male (ZISP).
Hosts.
Unknown.
Distribution.
* Korean peninsula; Russia (southern Far East).
description: Published as part of Belokobylskij, Sergey A. & Ku, Deokseo, 2025, Genera Colastes Haliday, Colastinus Belokobylskij, and Xenarcha Foerster (Hymenoptera, Braconidae, Exothecinae) from the Korean Peninsula with a discussion on the Exothecinae genus and subgenus composition, pp. 141-183 in ZooKeys 1236 on pages 141-183, DOI: 10.3897/zookeys.1236.148928
Penggunaan Flat Design dalam Animasi 2D untuk Promosi UMKM Songket Palembang
Creators: name: Lutfiah, Raden Ayu Aisyah
name: Supani, Ahyar
name: Ami, Hidayati
Publisher: name: JTIMD
Year: 2025
Subjects: Animasi 2D
Video Promosi
Flat Design
Adobe After Effect
MDLC

description: Kota Palembang dikenal dengan kain tradisional seperti songket, yang dahulu terbuat dari emas murni dan kini menggunakan benang sintetis agar lebih terjangkau. UMKM berperan penting dalam ekonomi Indonesia. Namun, banyak UMKM menghadapi kendala dalam membuat video promosi yang menarik dan efektif karena keterbatasan sumber daya dan pengetahuan teknis. Toko Songket H. Cek Aleh Aziz, sebuah UMKM di Palembang, sebelumnya toko ini telah menggunakan media promosi seperti postingan di media sosial instagram story dan status whatsapp. Meskipun aktif mempromosikan produk di media sosial, pemilik menyadari perlu adanya pendekatan yang lebih unik dan menarik. Penelitian ini bertujuan mengembangkan video animasi 2D dengan teknik Flat Design sebagai media promosi yang efektif. Berdasarkan wawancara, Toko Songket H. Cek Aleh Aziz belum memiliki video animasi 2D untuk promosi. Metode pengembangan yang digunakan adalah Multimedia Development Life Cycle (MDLC) dengan 6 tahap dan menggunakan teknik kuesioner. Responden penelitian ini berjumlah 4 ahli dan 50 masyarakat umum yang diperoleh dari kuesioner online. Hasil penelitian ini menunjukkan bahwa sikap 4 responden ahli terhadap teknik flat design pada animasi video promosi songket Palembang adalah 83% dan berada di kategori “Sangat Setuju” serta sikap 50 responden masyarakat umum adalah 89,44% dan berada di kategori “Sangat Setuju”.
Supplemental Material - Outbreak of Pseudomonas aeruginosa on a neonatal intensive care unit: Lessons from a Qatari setting
Creators: name: Petkar, Hawabibee Mahir
name: Caseres-Chiuco, Imelda
name: Al-Shaddad, Afaf
name: Mohamed, Mahmoud
name: Ahmed, Irshad
name: Rao, Rosemary
name: Perdon, Roderic
name: Elhaj, Moneir
name: Latheef, Lajish
name: George, Bonnie
name: Mustafa, Eman
name: Al-Ajmi, Jameela
name: Saleh, Huda
Publisher: name: SAGE Journals
Year: 2024
Subjects: Health and Community Services
Nursing not elsewhere classified
Public Health and Health Services not elsewhere classified

description: Supplemental Material for Outbreak of Pseudomonas aeruginosa on a neonatal intensive care unit: Lessons from a Qatari setting by Hawabibee Mahir Petkar, Imelda Caseres-Chiuco, Afaf Al-Shaddad, Mahmoud Mohamed, Irshad Ahmed, Rosemary Rao, Roderic Perdon, Moneir Elhaj, Lajish Latheef5, Bonnie George, Eman Mustafa, Jameela Al-Ajmi and Huda Saleh in Journal of Infection Prevention.
Doraemon's Gadget Lab: Unpacking Human Needs and Interaction Design in Speculative Technology
Creators: name: Tran, Tram Thi Minh
Publisher: name: arXiv
Year: 2025
Subjects: subject: Human-Computer Interaction (cs.HC)
subject: FOS: Computer and information sciences

description: Speculative technologies in science fiction have long inspired advancements in Human-Computer Interaction (HCI). Doraemon, a Japanese manga featuring a robotic cat from the 22nd century, presents an extensive collection of futuristic gadgets-an underexplored source of speculative technologies. This study systematically analyses 379 of these gadgets, categorising them into 33 subcategories within 10 high-level groupings, to examine the fundamental human needs they address, their parallels to contemporary technologies, and their potential insights for HCI design. The findings reveal that while human needs remain constant, the ways in which technology fulfils them differ. Doraemon's gadgets emphasise tangible, single-purpose interactions with built-in reversibility, contrasting with the increasing complexity and software-driven nature of modern systems. By examining these speculative technologies, this study highlights alternative interaction paradigms that challenge current HCI trends and offer inspiration for future user-centred innovation.
sj-pdf-1-inq-10.1177_00469580241235755 – Supplemental material for Lifestyle and ADL Are Prioritized Factors Influencing All-Cause Mortality Risk Among Oldest Old: A Population-Based Cohort Study
Creators: name: Ge, Zhiwen
name: Li, Cheng
name: Li, Yaru
name: Wang, Nan
name: Hong, Zhongxin
Publisher: name: SAGE Journals
Year: 2024
Subjects: Nursing not elsewhere classified

description: Supplemental material, sj-pdf-1-inq-10.1177_00469580241235755 for Lifestyle and ADL Are Prioritized Factors Influencing All-Cause Mortality Risk Among Oldest Old: A Population-Based Cohort Study by Zhiwen Ge, Cheng Li, Yaru Li, Nan Wang and Zhongxin Hong in INQUIRY: The Journal of Health Care Organization, Provision, and Financing
An investigation of the purpose and benefit of Aviation Rescue Fire Fighting Services, how such benefit is created and where the service is best located.
Creators: name: Woodman, Samuel
Publisher: name: CQUniversity
Year: 2025
Subjects: classificationCode: 529999
subject: Other psychology not elsewhere classified

description: Aviation Rescue Fire Fighting Services (ARFFS) have been established for the purpose of saving lives in the event of an aircraft accident, on or within the immediate vicinity of an aerodrome. Globally, ARFFS exist as a component of civil aviation safety standards, promulgated by the International Civil Aviation Organization (ICAO). However, there is limited academic literature on the topic of ARFFS. This paucity of studies limits the ability for evidence-based research to inform and guide future policy planning and strategic decision-making. For the ARFFS to remain relevant, purposeful and contribute to aviation safety well into the future, a clear understanding of foundational aspects relevant to ARFFS must be established. The aim of this research is to enhance knowledge of ARFFS by analysing and exploring three important areas. The first area relates to the purpose of ARFFS, seeking to identify the benefit of ARFFS at an aircraft accident. The second area explores how this benefit is practically created through analysis of training and skills, with a particular focus on skill decay and competency maintenance. The third and final area relates to identifying characteristics which indicate the need for an ARFFS at a particular aerodrome, informing how ARFFS establishment requirements can be considered internationally. The outcome of this research has provided new insights relating to the ARFFS, with the implication of ‘technically survivable’ accidents identified as an important concept where ARFFS is able to create the greatest benefit to safety and survivability. Analysis of ARFFS training and skills maintenance has identified the importance of skill decay to inform the frequency of recurrent competency training. A model skill decay analysis process is proposed, which can be used to assist ARFFS providers and training organisations to determine the frequency of core-skill training activities. The results of analysis into aviation safety occurrences and accident data have documented important characteristics indicating where the need for ARFFS is greatest. The analysis indicates that focusing ARFFS establishment on passenger movement may not provide a complete picture of where the need for ARFFS is greatest, and can result in the ARFFS not being located where aircraft accidents most commonly happen. This research identifies that a risk-based approach to ARFFS establishment is required, and whilst further research is needed in this area, a model approach to ARFFS establishment is proposed. Overall the information reported in this thesis improves our knowledge of ARFFS, providing new insights and applied concepts which are all designed to improve the efficacy of ARFFS and aviation safety.
Supplemental Material - Vision Impairment and Frailty Among Mexican American Older Adults: A Longitudinal Study
Creators: name: Sonnenfeld, Mandi L.
name: Pappadis, Monique R.
name: Reistetter, Timothy A.
name: Raji, Mukaila A.
name: Ottenbacher, Kenneth
name: Al Snih, Soham
Publisher: name: SAGE Journals
Year: 2024
Subjects: Endocrinology
Geriatrics and Gerontology
Public Health and Health Services not elsewhere classified

description: Supplemental Material for Vision Impairment and Frailty Among Mexican American Older Adults: A Longitudinal Study by Mandi L. Sonnenfeld, Monique R. Pappadis, Timothy A. Reistetter, Mukaila A. Raji, Kenneth Ottenbacher, and Soham Al Snih in Journal of Applied Gerontology.
Pathogen shifts in a honeybee predator following the arrival of the Varroa mite
Creators: name: Loope, KJ
name: Baty, James
name: Lester, Philip
name: Rankin, EE Wilson
Publisher: name: Open Access Te Herenga Waka-Victoria University of Wellington
Year: 2021
Subjects: classificationCode: 310999
subject: Zoology not elsewhere classified

description: Emerging infectious diseases (EIDs) are a global threat to honeybees, and spillover from managed bees threaten wider insect populations. Deformed wing virus (DWV), a widespread virus that has become emergent in conjunction with the spread of the mite Varroa destructor, is thought to be partly responsible for global colony losses. The arrival of Varroa in honeybee populations causes a dramatic loss of viral genotypic diversity, favouring a few virulent strains. Here, we investigate DWV spillover in an invasive Hawaiian population of the wasp, Vespula pensylvanica, a honeybee predator and honey-raider. We show that Vespula underwent a parallel loss in DWV variant diversity upon the arrival of Varroa, despite the mite being a honeybee specialist. The observed shift in Vespula DWV and the variant-sharing between Vespula and Apis suggest that these wasps can acquire DWV directly or indirectly from honeybees. Apis prey items collected from Vespula foragers were positive for DWV, indicating predation is a possible route of transmission. We also sought cascading effects of DWV shifts in a broader Vespula pathogen community. We identified concurrent changes in a suite of additional pathogens, as well as shifts in the associations between these pathogens in Vespula. These findings reveal how hidden effects of the Varroa mite can, via spillover, transform the composition of pathogens in interacting species, with potential knock-on effects for entire pathogen communities.
sj-docx-2-tan-10.1177_17562864241233044 – Supplemental material for Disease-modifying therapy initiation patterns in multiple sclerosis in three large MS populations
Creators: name: Stahmann, Alexander
name: Craig, Elaine
name: Ellenberger, David
name: Fneish, Firas
name: Frahm, Niklas
name: Marrie, Ruth Ann
name: Middleton, Rod
name: Nicholas, Richard
name: Rodgers, Jeff
name: Warnke, Clemens
name: Salter, Amber
Publisher: name: SAGE Journals
Year: 2024
Subjects: subject: Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: Pharmacology and Pharmaceutical Sciences not elsewhere classified

description: Supplemental material, sj-docx-2-tan-10.1177_17562864241233044 for Disease-modifying therapy initiation patterns in multiple sclerosis in three large MS populations by Alexander Stahmann, Elaine Craig, David Ellenberger, Firas Fneish, Niklas Frahm, Ruth Ann Marrie, Rod Middleton, Richard Nicholas, Jeff Rodgers, Clemens Warnke and Amber Salter in Therapeutic Advances in Neurological Disorders
Additional files_Castillo-Lorenzo et al., 2024_Current status of global conservation and characterisation of wild and cultivated Brassicaceae genetic resources
Creators: name: Castillo-Lorenzo, Elena
name: Breman, Elinor
name: Gomez Barreiro, Pablo
name: Viruel, Juan
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 300403
subject: Agronomy
classificationCode: 300803
subject: Horticultural crop improvement (incl. selection and breeding)
classificationCode: 410401
subject: Conservation and biodiversity
classificationCode: 300210
subject: Sustainable agricultural development

description: These files are referenced in the article: Castillo-Lorenzo, Breman, Gomez Barreiro and Viruel (2024). Current status of global conservation and characterisation of wild and cultivated Brassicaceae genetic resources. GigaScience (accepted) doi: 10.1093/gigascience/giae050Data gathered for 1242 wild Brassicaeea species related to cultivated species. The data includes conservation status, ex situ conservation records, classification of crop wild relatives and crop related to, phyisio and phenotipic traits described and published and chromosome number.
sj-docx-1-dhj-10.1177_20552076241239243 - Supplemental material for mHealth intervention including text messaging and behaviour change techniques to support maintenance of physical activity after cardiac rehabilitation: A single-arm feasibility study
Creators: name: Hamborg, Trine G
name: Andersen, Rune M
name: Skou, Søren T
name: Clausen, Mikkel B
name: Jäger, Madalina
name: Zangger, Graziella
name: Simonÿ, Charlotte
name: Grøntved, Anders
name: Brønd, Jan C
name: Soja, Anne M B
name: Tang, Lars H
Publisher: name: SAGE Journals
Year: 2024
Subjects: subject: Health and Community Services
subject: Cardiology
subject: Endocrinology
subject: Geriatrics and Gerontology
subject: Nursing not elsewhere classified
subject: Oncology and Carcinogenesis not elsewhere classified
subject: Aged Health Care
subject: Public Health and Health Services not elsewhere classified
subject: Engineering not elsewhere classified
subject: Anthropology
subject: FOS: Sociology
subject: Cultural Studies not elsewhere classified
subject: Information and Computing Sciences not elsewhere classified
subject: Organisation and Management Theory
subject: Science Policy
subject: Social Policy
subject: Sociology

description: Supplemental material, sj-docx-1-dhj-10.1177_20552076241239243 for mHealth intervention including text messaging and behaviour change techniques to support maintenance of physical activity after cardiac rehabilitation: A single-arm feasibility study by Trine G Hamborg, Rune M Andersen, Søren T Skou and
Mikkel B Clausen, Madalina Jäger, Graziella Zangger, Charlotte Simonÿ, Anders Grøntved, Jan C Brønd,
Anne M B Soja, Lars H Tang in DIGITAL HEALTH
Ludom — Gestaltung begreifen
Creators: name: Mayr, Jakob
Publisher: name: Jakob Mayr
Year: 2023

description: Artistic diploma thesis, Institute of Design: Class for Graphics and Advertising, University of Applied Arts Vienna. The project “Ludom” develops concepts and tools for an interactive exhibition that makes design basics tangible by means of modular games. Building on practical approaches to world exploration and the principle of embodied cognition, the interactive part of the exhibition consists of objects that invite open-ended play. Through simple rules of play derived from the modular form of the objects, design variables become observable and applicable. The goal of the games is the design and construction of letters or symbols and a multi-sensory engagement with their form. The interactive level of the exhibition is complemented by a glossary of terms from various tangent fields, which can be related to the practically acquired bits of knowledge. The title of the project, Ludom is a palindrome of the word modul[e], Ludo, lat.: I play
description: Schriftlicher Teil zur künstlerischen Diplomarbeit, Institut für Design: Klasse für Grafik und Werbung, Universität für angewandte Kunst Wien. Das Projekt „Ludom“ erarbeitet Konzepte und Werkzeuge für eine interaktive Ausstellung, die gestalterische Grundlagen anhand von modularen Spielen greifbar macht. Aufbauend auf praktischen Ansätzen der Welterkundung und dem Prinzip des verkörperlichten Denkens, besteht der interaktive Teil der Ausstellung aus Objekten, die zum offenen Spiel einladen. Durch einfache Spielregeln, die sich aus der modularen Form der Objekte ableiten, werden gestalterische Variablen beobachtbar und anwendbar. Das Ziel der Spiele ist der Entwurf und die Konstruktion von Buchstaben oder Symbolen und eine multisensorische Auseinandersetzung mit deren Form. Die interaktive Ebene der Ausstellung wird durch einen Glossar an Begriffen aus verschiedenen Feldern ergänzt, welche mit den praktisch erlangten Erkenntnissen in Verbindung gesetzt werden können. Der Titel des Projekts, Ludom ist ein Palindrom des Wortes Modul, Ludo, lat.: ich spiele.
sj-docx-2-cpc-10.1177_10556656241239459 - Supplemental material for Can MRI Replace Nasopharyngoscopy in the Evaluation of Velopharyngeal Insufficiency?
Creators: name: Williams, Jessica L.
name: Perry, Jamie L.
name: Snodgrass, Taylor D.
name: Singh, Davinder J.
name: Temkit, M’hamed
name: Sitzman, Thomas J.
Publisher: name: SAGE Journals
Year: 2024
Subjects: Surgery

description: Supplemental material, sj-docx-2-cpc-10.1177_10556656241239459 for Can MRI Replace Nasopharyngoscopy in the Evaluation of Velopharyngeal Insufficiency? by Jessica L. Williams, Jamie L. Perry and
Taylor D. Snodgrass, Davinder J. Singh, M’hamed Temkit, Thomas J. Sitzman in The Cleft Palate Craniofacial Journal
Supplemental Material - Prevalence and Characteristics of Pathological Fractures in Patients Referred to Specialist Palliative Care: A Retrospective Study From India
Creators: name: Kuriakose, Jyothsna
name: Surendran, Sumith
name: Deodhar, Jayita K.
name: P, Prasun
name: Sonawane, Rutula N.
name: Jayaseelan, Prarthna
Publisher: name: SAGE Journals
Year: 2024
Subjects: Nursing not elsewhere classified
Aged Health Care

description: Supplemental Material for Prevalence and Characteristics of Pathological Fractures in Patients Referred to Specialist Palliative Care: A Retrospective Study From India by Jyothsna Kuriakose, Sumith Surendran, Jayita K. Deodhar, Prasun P, Rutula N. Sonawane, and Prarthna Jayaseelan in American Journal of Hospice and Palliative Medicine®
Supplemental Material - Consequences of the Coronavirus disease 2019 pandemic on child and adolescent mental, psychosocial, and physical health: A scoping review and interactive evidence map
Creators: name: Bialy, Liza
name: Elliott, Sarah A
name: Melton, Alison
name: Ali, Samina
name: Scott, Shannon D
name: Knisley, Lisa
name: Hartling, Lisa
Publisher: name: SAGE Journals
Year: 2024
Subjects: Health and Community Services
Nursing not elsewhere classified
Paediatrics

description: Supplemental Material for Consequences of the Coronavirus disease 2019 pandemic on child and adolescent mental, psychosocial, and physical health: A scoping review and interactive evidence map by Liza Bialy, Sarah A Elliott, Alison Melton, Samina Ali, Shannon D Scott, Lisa Knisley, and Lisa Hartling in Journal of Child Health Care.
sj-docx-1-jpc-10.1177_21501319241233173 – Supplemental material for Sex Workers in Canada Face Unequal Access to Healthcare: A Systems Thinking Approach
Creators: name: Squires, Kaitlyn
Publisher: name: SAGE Journals
Year: 2024
Subjects: Health and Community Services
Public Health and Health Services not elsewhere classified

description: Supplemental material, sj-docx-1-jpc-10.1177_21501319241233173 for Sex Workers in Canada Face Unequal Access to Healthcare: A Systems Thinking Approach by Kaitlyn Squires in Journal of Primary Care & Community Health
sj-docx-1-onc-10.1177_11795549241239042 – Supplemental material for Identification of Transcriptomic Signatures of Pancreatic Ductal Adenocarcinoma–Derived Exosomes That Promote Macrophage M2 Polarization and Predict Prognosis: S100A9 Reveals Tumor Progression
Creators: name: Tan, Siyuan
name: Tang, Haodong
name: Zhang, Zheng
name: Wang, Yang
name: Li, Haifeng
name: Shi, Wenyuan
name: Ye, Hao
name: Xie, Peng
name: Zhou, Jiahua
Publisher: name: SAGE Journals
Year: 2024
Subjects: Oncology and Carcinogenesis not elsewhere classified

description: Supplemental material, sj-docx-1-onc-10.1177_11795549241239042 for Identification of Transcriptomic Signatures of Pancreatic Ductal Adenocarcinoma–Derived Exosomes That Promote Macrophage M2 Polarization and Predict Prognosis: S100A9 Reveals Tumor Progression by Siyuan Tan, Haodong Tang, Zheng Zhang, Yang Wang, Haifeng Li, Wenyuan Shi, Hao Ye, Peng Xie and Jiahua Zhou in Clinical Medicine Insights: Oncology
sj-docx-1-son-10.1177_23779608241240137 - Supplemental material for The Lived Experience of Family Support Among Women During and After Childbirth in Jordan: A Phenomenological Study
Creators: name: Ababneh, Amal MT.
name: Alrida, Nour
name: Abu-Abbas, Manar
name: Rayan, Ahmad
name: Abu Sumaqa, Yasmeen
name: Alhamory, Sajeda
name: Al-Zu’bi, Basheer
Publisher: name: SAGE Journals
Year: 2024
Subjects: Medicine
Nursing not elsewhere classified
Public Health and Health Services not elsewhere classified

description: Supplemental material, sj-docx-1-son-10.1177_23779608241240137 for The Lived Experience of Family Support Among Women During and After Childbirth in Jordan: A Phenomenological Study by Amal MT. Ababneh, Nour Alrida, Manar Abu-Abbas, Ahmad Rayan, Yasmeen Abu Sumaqa, Sajeda Alhamory and Basheer Al-Zu’bi in SAGE Open Nursing
sj-docx-4-saj-10.1177_29767342241236027 – Supplemental material for Association of Disability Status and Type With Binge Drinking and Prescription Opioid Misuse Among Adults From a 3-State Sample
Creators: name: Adams, Rachel Sayko
name: Corrigan, John D.
name: Ritter, Grant A.
name: Pringle, Zoe A.
name: Zolotusky, Galina
name: Blayney, Rachel
name: Reif, Sharon
Publisher: name: SAGE Journals
Year: 2024
Subjects: Public Health and Health Services not elsewhere classified

description: Supplemental material, sj-docx-4-saj-10.1177_29767342241236027 for Association of Disability Status and Type With Binge Drinking and Prescription Opioid Misuse Among Adults From a 3-State Sample by Rachel Sayko Adams, John D. Corrigan, Grant A. Ritter, Zoe A. Pringle, Galina Zolotusky, Rachel Blayney and Sharon Reif in Substance Use & Addiction Journal
RNA-seq pipeline tutorial with an example of reprocessing data from a recent Zika virus study
Creators: name: Zichen Wang
name: Ma'ayan, Avi
Publisher: name: F1000Research
Year: 2016

description: RNA-seq analysis is becoming a standard method for global gene expression profiling. However, open and standard pipelines to perform RNA-seq analysis by non-experts remain challenging due to the large size of the raw data files and the hardware requirements for running the alignment step. Here we introduce a reproducible open source RNA-seq pipeline delivered as an IPython notebook and a Docker image. The pipeline uses state-of-the-art tools and can run on various platforms with minimal configuration overhead. The pipeline enables the extraction of knowledge from typical RNA-seq studies by generating interactive principal component analysis (PCA) and hierarchical clustering (HC) plots, performing enrichment analyses against over 90 gene set libraries, and obtaining lists of small molecules that are predicted to either mimic or reverse the observed changes in mRNA expression. We apply the pipeline to a recently published RNA-seq dataset collected from human neuronal progenitors infected with the Zika virus (ZIKV). In addition to confirming the presence of cell cycle genes among the genes that are downregulated by ZIKV, our analysis uncovers significant overlap with upregulated genes that when knocked out in mice induce defects in brain morphology. This result potentially points to the molecular processes associated with the microcephaly phenotype observed in newborns from pregnant mothers infected with the virus. In addition, our analysis predicts small molecules that can either mimic or reverse the expression changes induced by ZIKV. The IPython notebook and Docker image are freely available at:
http://nbviewer.jupyter.org/github/maayanlab/Zika-RNAseq-Pipeline/blob/master/Zika.ipynb &
https://hub.docker.com/r/maayanlab/zika/
Engaging And Training Undergraduates In Big Data Analysis Through Genome Annotation
Creators: name: Leung, Wilson
name: Marenco, Remi
name: Liu, Yating
name: Goecks, Jeremy
name: Elgin, Sarah C.R.
Publisher: name: Zenodo
Year: 2016
Subjects: BD2K_AHM
G-OnRamp

description: G-OnRamp poster for the 2016 BD2K All Hands Meeting
Supplemental Material - Physical activity coaching in patients with interstitial lung diseases: A randomized controlled trial
Creators: name: Breuls, Sofie
name: Zlamalova, Tamara
name: Raisova, Katerina
name: Blondeel, Astrid
name: Wuyts, Marieke
name: Dvoracek, Martin
name: Zurkova, Monika
name: Yserbyt, Jonas
name: Janssens, Wim
name: Wuyts, Wim
name: Troosters, Thierry
name: Demeyer, Heleen
Publisher: name: SAGE Journals
Year: 2024
Subjects: Aged Health Care
Respiratory Diseases

description: Supplemental Material for Physical activity coaching in patients with interstitial lung diseases: A randomized controlled trial by Sofie Breuls, Tamara Zlamalova, Katerina Raisova, Astrid Blondeel, Marieke Wuyts, Martin Dvoracek, Monika Zurkova, Jonas Yserbyt, Wim Janssens, Wim Wuyts, Thierry Troosters and Heleen Demeyer in Journal of Chronic Respiratory Disease.
sj-pdf-1-tec-10.1177_02711214241240617 – Supplemental material for A Systematic Review of Which Families Are Represented in ECSE Literature
Creators: name: Adams, Nicole B.
name: O’Grady, Courtney E.
name: Chudzik, Mia
name: Hunter, Jordyn
Publisher: name: SAGE Journals
Year: 2024
Subjects: Education
Psychology not elsewhere classified
Special Education and Disability

description: Supplemental material, sj-pdf-1-tec-10.1177_02711214241240617 for A Systematic Review of Which Families Are Represented in ECSE Literature by Nicole B. Adams, Courtney E. O’Grady, Mia Chudzik and Jordyn Hunter in Topics in Early Childhood Special Education
sj-docx-1-sms-10.1177_20563051241237273 – Supplemental material for Traversing Emotional Spaces: Social Media Affordances and Emotion Regulation in Times of Physical Isolation
Creators: name: Peng, Lulu
name: Wang, Jinping
name: Zheng, Nanxiao
name: Guo, Xiaoping
Publisher: name: SAGE Journals
Year: 2024
Subjects: Communication and Media Studies not elsewhere classified

description: Supplemental material, sj-docx-1-sms-10.1177_20563051241237273 for Traversing Emotional Spaces: Social Media Affordances and Emotion Regulation in Times of Physical Isolation by Lulu Peng, Jinping Wang, Nanxiao Zheng and Xiaoping Guo in Social Media + Society
sj-docx-1-cnr-10.1177_10547738241238249 – Supplemental material for Identification of Inflammatory Mediators in Saliva Samples From Hospitalized Newborns: Potential Biomarkers?
Creators: name: Rocha, Vanderlei Amadeu da
name: Cruz-Machado, Sanseray da Silveira
name: Silva, Isília Aparecida
name: Fernandes, Pedro Augusto Carlos Magno
name: Markus, Regina Pekelmann
name: Bueno, Mariana
Publisher: name: SAGE Journals
Year: 2024
Subjects: Nursing not elsewhere classified

description: Supplemental material, sj-docx-1-cnr-10.1177_10547738241238249 for Identification of Inflammatory Mediators in Saliva Samples From Hospitalized Newborns: Potential Biomarkers? by Vanderlei Amadeu da Rocha, Sanseray da Silveira Cruz-Machado, Isília Aparecida Silva, Pedro Augusto Carlos Magno Fernandes, Regina Pekelmann Markus and Mariana Bueno in Clinical Nursing Research
Seabird bycatch and mitigation efforts in Alaska Fisheries : summary report, 2007 through 2015.
Creators: name: Eich, Anne Marie
name: Mabry, Kristin R.
name: Wright, Sadie K.
name: Fitzgerald, Shannon M. (Shannon Matthew), 1955-
Publisher: name: U.S. Department of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service, Alaska Regional Office
Year: 2016
Subjects: subject: Sea birds--Mortality--Alaska--Prevention.

description: This report reviews seabird bycatch in commercial groundfish and halibut fisheries in the exclusive economic zone (EEZ; FIGURE 1) off Alaska from 2007 through 2015, provides recent trends in seabird bycatch estimates for these fisheries, and reviews seabird avoidance measures for these fisheries. This report also details efforts by NOAA Fisheries to understand, monitor, and minimize bycatch of the endangered short-tailed albatross in the EEZ off Alaska.
Cloud-based drag-and-drop scalable RNA sequencing pipeline
Creators: name: Lachmann, Alexander
name: Goff, Troy
name: Monteiro, Caroline D.
name: Koplev, Simon
name: Ma'ayan, Avi
Publisher: name: F1000Research
Year: 2016

description: Databases such as the Gene Expression Omnibus (GEO) and the Sequence Read Archive (SRA) host thousands of RNA-sequencing gene expression studies and are rapidly growing. Such repositories are central for improving our understanding of cellular processes at the global scale. The shift from cDNA microarrays to RNA-seq presents significant challenges when it comes to reanalysis of previously published datasets, and the analysis of new datasets. Compared with microarray data, RNA-seq analysis is orders of magnitude more computationally demanding with respect to raw data size, memory requirements, and computational power. To address the need for developing scalable processing of RNA-seq data, we developed an efficient hybrid-cloud solution. The software architecture of our system is based on dockerized images, simplifying the deployment on any server infrastructure that supports Docker. All software dependencies are contained within the Docker images that can be executed scalably, first locally, and then if demand is high, utlize cloud providers such as Amazon Web Services (AWS). The RNA-seq pipeline supports user interaction via an easy to use web interface and through APIs, enabling researchers to analyze their own high throughput gene expression experiments in context of prior studies. With this pipeline we have reprocessed and analyzed over 8,000 samples from publicly available RNA-seq studies to extract gene expression signatures for drug, disease and single gene perturbations. In addition, we have reprocessed all 176,000 mammalian raw RNA-seq samples currently available on GEO and SRA. By the use of a Google Chrome browser extension, we plan to provide links for users to download the processed data in Series Matrix Files format to facilitate data reuse. Currently, the project is part of the first cohort of utilizing the Cloud Credits Model for the BD2K Commons.
Clustergrammer: web-based heatmap visualization and analysis tool for high-dimensional biological data
Creators: name: Fernandez, Nicolas F.
name: Gundersen, Gregory W.
name: Qiaonan Duan
name: Jones, Matthew R.
name: Rouillard, Andrew D.
name: McDermott, Michael G.
name: Adeeb Rahman
name: Ma'ayan, Avi
Publisher: name: F1000Research
Year: 2016

description: Hierarchically clustered heatmaps are a popular visualization technique to display high-dimensional biological datasets as figures in research publications. Most tools developed to visualize hierarchically clustered heatmaps generate static images. Clustergrammer is a web-based matrix visualization tool built, using the D3 JavaScript library, to enable experimental and computational-biologists to easily generate highly interactive heatmaps. Clustergrammer implements many interactive features including: zooming, panning, filtering, sorting, reordering, dimensionality reduction, gene set enrichment analysis, gene description text, and shareable persistent links. Clustergrammer can be used to visualize and analyze a diverse set of high-dimensional biological data including: gene expression, protein-protein interactions, and CyTOF single-cell proteomics data. Clustergrammer provides interactive visualizations for several web-tools including: Enrichr, GEN3VA, GEO2Enrichr, Harmonizome, and L1000CDS2. In addition, Clustergrammer can be embedded within IPython Jupyter Notebooks or as a standalone open-source JavaScript or Python library.
Dashboard visualization and tool integration for Enrichr
Creators: name: Kuleshov, Maxim V.
name: Ma'ayan, Avi
Publisher: name: F1000Research
Year: 2016

description: Genomic, transcriptomic, epigenomic, proteomic and other omic studies generate lists of genes and proteins that are hard to interpret. One powerful approach to help with the understanding the biological functions embedded within such lists is to query these lists against annotated gene sets for enrichment analysis. The BD2K-LINCS DCIC is actively developing and maintaining a popular gene set enrichment analysis tool called Enrichr. Since it publication, Enrichr was accessed by over 45,000 users who uploaded over 1.7 million lists for analysis with this tool. In 2016 the submission rate increased substantially, and it is currently at a median of more than 850 lists per day. Here we describe a new alternative method to visualize enrichment results with Enrichr, as well as integration with other tools. We plan to demonstrate how the results from the enrichment analyses can be visualized as a dashboard that displays summarized results for each biological category. Users can customize their dashboard by selecting the gene set libraries that they deem most relevant to their work. To infer upstream regulatory networks from differentially expressed genes, Enrichr will be integrating analysis from three related tools we have developed: Expression2Kinases (X2K), Genes2Networks (G2N) and L1000CDS2. X2K produces inferred upstream regulatory networks made of transcription factors, intermediate proteins, and protein kinases which are predicted to regulate lists of differentially expressed genes. G2N creates subnetworks from input genes or proteins based on known protein-protein interactions. L1000CDS2 produces lists of small molecules that can either reverse or mimic gene expression signatures based on the LINCS L1000 data. Overall, the integration of these tools into Enrichr, armed with a new dashboard visualization, is expected to enhance users experience to help investigators extract more knowledge from their data. Enrichr is freely available at http://amp.pharm.mssm.edu/Enrichr
Synthesis, characterization and performance of ecofriendly epoxy resin as a highly efficient corrosion inhibition for mild steel in 1m HCl solution
Creators: name: Dahmani, Khadija
name: Khattabi, Mohamed
name: Errahmany, Nordine
name: Saber, Issam
name: Galai, Mouhsine
name: Cherkaoui, Mohammed
name: Magri, Anouar El
name: Hsissou, Rachid
name: Hmada, Abdelfettah
name: Touhami, Mohamed Ebn
name: AlObaid, Abeer A.
name: Al-Maswari, Basheer M.
name: Warad, Ismail
Publisher: name: Taylor & Francis
Year: 2024
Subjects: Biophysics
Biochemistry
Physical Sciences not elsewhere classified
Medicine
Pharmacology
Biotechnology
Environmental Sciences not elsewhere classified
Chemical Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Hematology

description: In this study, a novel epoxy resin called tetraglycidyl ether of methyl-α-D-mannopyranoside (TGEMM) was synthesized and investigated for its potential used as a corrosion inhibitor for mild steel in a 1.0 M hydrochloric acid (HCl) solution. The main goal was to evaluate the corrosion inhibition properties of TGEMM using various techniques. The methods used in this research included potentiodynamic polarization, electrochemical impedance spectroscopy (EIS), temperature effect, scanning electron microscopy, energy dispersive X-ray spectroscopy, atomic force microscopy and contact angle measurement. These techniques were chosen to comprehensively assess the corrosion inhibition performance of TGEMM on MS. In this context, the structure of the newly synthesized TGEMM epoxy resin was identified and confirmed using Fourier transform infrared spectroscopy (FTIR) and nuclear magnetic resonance (NMR). The results obtained from the experiments demonstrated that, at a lower concentration of 10−3 M, TGEMM demonstrated a high inhibitory efficacy of 91.49%, assessed via electrochemical impedance spectroscopy (EIS), and 93.84%, measured via potentiodynamic polarization (PDP), in a 1.0 M hydrochloric acid solution. The PDP data indicated that the TGEMM epoxy resin acted as an anodic inhibitor in the acidic environment. In addition to gain insights into the interaction mechanism and adsorption mode, DFT and MD simulations were conducted, revealing valuable information about the interaction of TGEMM with the mild steel surface.
Synthesis, characterization and performance of ecofriendly epoxy resin as a highly efficient corrosion inhibition for mild steel in 1m HCl solution
Creators: name: Dahmani, Khadija
name: Khattabi, Mohamed
name: Errahmany, Nordine
name: Saber, Issam
name: Galai, Mouhsine
name: Cherkaoui, Mohammed
name: Magri, Anour El
name: Hsissou, Rachid
name: Hmada, Abdelfettah
name: EbnTouhami, Mohamed
name: AlObaid, Abeer A.
name: Al-Maswari, Basheer M.
name: Warad, Ismail
Publisher: name: Taylor & Francis
Year: 2024
Subjects: Biophysics
Biochemistry
Physical Sciences not elsewhere classified
Medicine
Pharmacology
Biotechnology
Environmental Sciences not elsewhere classified
Chemical Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Hematology

description: In this study, a novel epoxy resin called tetraglycidyl ether of methyl-α-D-mannopyranoside (TGEMM) was synthesized and investigated for its potential used as a corrosion inhibitor for mild steel in a 1.0 M hydrochloric acid (HCl) solution. The main goal was to evaluate the corrosion inhibition properties of TGEMM using various techniques. The methods used in this research included potentiodynamic polarization, electrochemical impedance spectroscopy (EIS), temperature effect, scanning electron microscopy, energy dispersive X-ray spectroscopy, atomic force microscopy and contact angle measurement. These techniques were chosen to comprehensively assess the corrosion inhibition performance of TGEMM on MS. In this context, the structure of the newly synthesized TGEMM epoxy resin was identified and confirmed using Fourier transform infrared spectroscopy (FTIR) and nuclear magnetic resonance (NMR). The results obtained from the experiments demonstrated that, at a lower concentration of 10−3 M, TGEMM demonstrated a high inhibitory efficacy of 91.49%, assessed via electrochemical impedance spectroscopy (EIS), and 93.84%, measured via potentiodynamic polarization (PDP), in a 1.0 M hydrochloric acid solution. The PDP data indicated that the TGEMM epoxy resin acted as an anodic inhibitor in the acidic environment. In addition to gain insights into the interaction mechanism and adsorption mode, DFT and MD simulations were conducted, revealing valuable information about the interaction of TGEMM with the mild steel surface.
No Teacher Left Offline: A Hermeneutic Study Of Online Communication And Relationship Building For Near-Retirement Educators At Universities In Manila, Philippines
Creators: name: Amoyo, Krizelle
Publisher: name: Zenodo
Year: 2024
Subjects: online communication in education
baby boomers
online communication practices
relationship building in education
intergenerational communication

description: Purpose:

The pandemic forced a shift in the mode of delivery in education. Forcing everyone to migrate to the online platform just to make learning and communication possible. The platform is one thing, but paying attention to the sender of the message in the educational context is also a must to ensure effectiveness despite the trials. With near-retirement educators or those who belong to the baby boomer generation regarded as the tenured and respected individuals in the field, we must ensure support and assistance to help them navigate their way through an unmastered territory. This study seeks to understand the experiences of near-retirement educators and how they adapt to the obligatory online communication setup for relationship-building with their students. 

Data Gathering:

Through purposeful sampling, four near-retirement educators were invited to a one-on-one interview where they shared narratives during the shift to fully online communication. Interviews were recorded, transcribed, and, following the Hermeneutic approach,  analyzed and interpreted. 

Findings:

Four main themes emerged from the analysis that directly answered the research questions: (1) ‘Cause of Disconnect’ that focuses on the challenges and hurdles of the participants; (2) ‘Triumph to Reconnect’ that expounds on their wins and successes; (3) ‘Switching Gears’ that narrates their changed practices to adapt to the situation; and lastly, (4) ‘Embracing the Change’ that highlights their key learning and lessons they can impart as veterans in the field of education. These four main themes can be further analyzed with the help of three to four sub-themes present, respectively. 

Conclusion: 

Due to the haste generalization that we subject baby boomers to, we sometimes forget that the year a person is born or their age shall never be the sole determinant of how we perceive their actions. With a strong prejudice toward close-mindedness and receptivity to advancements, we box these individuals without knowing that they are more than that. The years under their belt should be seen as a sign of dedication, for they are driven by heart and fueled by passion, which resulted in their willingness to adapt to changes and embrace challenges for the welfare of their students. Ultimately, it will take more than a shift of mode and an unfamiliar platform before you can take a strong-willed individual like the four participants.

Keywords:

Online Communication in Education, Baby Boomers, Online Communication Practices, Relationship Building in Education, Intergenerational Communication,
Metadata Mapping In Biocaddie: Challenging Cases
Creators: name: Zong, Nansu
name: Guijiarro, Diana
name: Wong, Sze Nga
name: Soh, Shao Ling
name: Khan, Muhammad
name: Kim, Hyeon-eui
name: Grethe, Jeffrey S.
name: Ozyurt, Burak
name: Xu, Hua
name: Chen, Xiaoling
name: Liu, Ruiling
name: Gururaj, Anupama
name: Soysal, Ergin
name: Li, Yueling
name: Farcas, Claudiu
name: Gonzalez-Beltran, Alejandra
name: Rocca-Serra, Philippe
name: Fore, Ian
name: Margolis, Ronald
name: Alter, George
name: Sansone, Susanna-Assunta
name: Ohno-Machado, Lucila
Publisher: name: Zenodo
Year: 2016
Subjects: BD2K_AHM
bioCADDIE
metadata mapping

description: The metadata mapping workflow in data ingestion pipeline of bioCADDIE (biomedical and healthCAre Data Discovery Index Ecosystem) allows the different biomedical resources to be described with a unified and coherent metadata model, DATS (DAta Tagging Suite). However, we encountered several challenges during the process due to the differences in how the metadata are structured and what information the metadata are designed to capture between various data repositories (i.e., source data repositories) and DATS.  In this presentation we introduce the method used in the metadata mapping and the challenges we encountered during the process of mapping.
Multi-step analysis shows that late onset ALS with slow progression may represent a distinct aetiological subgroup
Creators: name: Rutter-Locher, Zoe
name: Tewkesbury, Daniel
name: L Stephenson
name: A Chio
name: C Ellis
name: O Hardiman
name: N Leigh
name: R W Orrell
name: J H Veldink
name: A E Visser
name: L H Van Den Berg
name: R Swingler
name: C Shaw
name: N Pearce
name: A Al-Chalabi
Publisher: name: F1000Research
Year: 2016

description: Background
A multi-step model applied to populations with ALS shows a linear relationship between log incidence and log age of onset of ALS with a slope estimate of 5, consistent with a hypothesis that ALS is on average a six step process(1). However, there is considerable heterogeneity in survival rates of ALS(2), suggesting that stratification might reveal subgroups in which a different number of steps is needed to cause ALS.

Objectives
Use the multi-step model to test the hypothesis that ALS with short survival represents a different entity from ALS with long survival

Methods
Patients from five population registers in England, Ireland, Italy, Netherlands and Scotland were categorised as having short or long survival based on median disease duration from Kaplan-Meier analysis. Linear least squares regression was used to regress log incidence against log age of onset in the subgroups in each register, which were then combined in a meta-analysis to derive the gradient of the best fit regression line. The slope estimate was taken as one less than the number of steps needed for disease onset

Results
There was a linear relationship between log incidence and log age of ALS onset in both long (slope estimate of 3.6 (r² 0.98, 95% CI 3.2-4.1)) and short (slope estimate of 5.7 (r² 0.98, 95% CI 5.0-6.4)) survival groups.

Subdividing the survival groups into young and old age of onset, using the arbitrary cut off of 50 years old, showed old age of onset group with long survival had a very different slope estimate of 2.3 (95% CI 1.7-2.9) compared with the other three subgroups (old onset, short survival gradient 5.7 (95% CI 5.4-6.0), young onset long survival gradient 4.2 (95% CI 3.6-4.8) and young onset short survival gradient 4.6 (95% CI 4.0-5.2).
Site of onset made no difference to slope estimate (bulbar onset, long survival gradient 4.0 (95% CI 3.7-4.4), spinal onset long survival gradient 3.4 (95% CI 3.23.7) bulbar onset, short survival gradient 5.5 (95% CI 5.0-6.0), spinal onset short survival 5.1 (95% CI 4.8-5.4).

We have shown that there is a distinct ALS subgroup comprising older people with slowly progressive disease in whom only three steps are required to trigger disease. The underlying aetiology must differ in at least one step between this subgroup and other forms of ALS and because there are only three steps, they may be more readily identified. This separate ALS subgroup may also respond differently to treatment and be relevant for clinical trial stratification
Empoderamiento De La Mujer En La Política: El Caso De Margarita Cedeño Y Hillary Clinton, Enlos Diarios Dominicanos Online 2012-2013
Creators: name: Yosep María Valerio, D.
Publisher: name: Zenodo
Year: 2016
Subjects: Mujer, Política, Primera dama, Margarita Cedeño.Hillary Clinton, Empoderamiento

description: Al momento de hablar de empoderamiento dentro del género femenino, nos referimos al proceso de interiorización o independencia ‘’Interna y Externa’’, que tiene la mujer dentro de su accionar cotidiano.

En ese trayecto, hay quienes han logrado independizarse y/o empoderarse, al punto de lograr ser parte de una reducida lista de mujeres que han llegado a ocupar puestos importantes dentro del ambiente político y/o partidario, en distintos países y continentes, alrededor del mundo.

Entre ellas, existe un grupo aún más reducido de mujeres, que han llevado su independencia política, más allá de estar sentimentalmente relacionadas, a un hombre de poder.
Supplemental Material - Visual Aesthetic Quotient: Establishing the Effects of Computational Aesthetic Measures for Servicescape Design
Creators: name: S Kumar, Deepak
name: Sahadev, Sunil
name: Purani, Keyoor
Publisher: name: SAGE Journals
Year: 2024
Subjects: Organisation and Management Theory
Hospitality Management

description: Supplemental Material for Visual Aesthetic Quotient: Establishing the Effects of Computational Aesthetic Measures for Servicescape Design by Deepak S Kumar, Sunil Sahadev, and Keyoor Purani in Journal of Service Research.