cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Cordyceps poluscapitis X. C. Peng, Y. P. Xiao & T. C. Wen 2023, sp. nov.
Creators: name: Peng, Xing-Can
name: Xiao, Yuan-Pin
name: Zhang, Yan
name: Chomnunti, Putarak
name: Tangtrakulwanich, Khanobporn
name: Wen, Ting-Chi
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Fungi
Ascomycota
Sordariomycetes
Hypocreales
Cordycipitaceae
Cordyceps
Cordyceps poluscapitis

description: Cordyceps poluscapitis X.C. Peng, Y.P. Xiao & T.C. Wen, sp. nov. (Fig. 2)
 Index Fungorum number: IF559584; Facesoffungi number: FoF 13863Etymology:— Fertile head is small.
 Holotype:— HKAS 122630
 Parasitic on ants (Hymenoptera, Formicidae). Host 1.2 cm long, red-brown, with white mycelium on the surface. Sexual morph:— Stromata 11 mm long, stipitate, double, unbranched, arising from the head and thorax of ant, pale yellow to orange. Stipe 8–9 mm long, 0.2–0.4 mm diam., pale yellow to orange, fleshy, cylindrical. Fertile head 2.5 mm long, 0.5–0.8 mm diam., single, clavate, surface roughened, orange. Perithecia 250–300 × 130–210 μm (x = 273 × 148 µm, n = 10), superficial, pale yellow-orange, ovoid. Asci 63–114 × 1.4–3.6 μm (x = 87 × 2.4 µm, n = 10), narrow cylindrical, hyaline, with a thickened apical cap. Apical cap 1.4–2.4 × 2.1–3.1 μm (x = 1.8 × 2.7 µm, n = 15), hyaline. Ascospores as long as asci, 0.2–0.5 μm (x = 0.3 µm, n = 10) diam., filiform, hyaline.
 Culture characteristics:— colonies on PDA, attaining a diameter of 29–34 mm after 19 d at 20 ° C, dense, cottony, white, ringed, reverse yellowish. Hyphae smooth, septate, hyaline, 0.7–3.25 μm (x = 1.7 µm, n = 30) diam. Phialides 11–25 × 0.8–1.4 µm (x = 17.2 × 1.1 µm, n = 5), solitary, smooth, lancelate. Conidia 3.8–17.1 × 1.1–2.4 µm (x = 9.6 × 1.6 µm, n = 40), cylindrical, smooth, aseptate or 1–2 septate.
 Material examined:— CHINA. Guizhou Province: Chishui Waterfall, on dead ant (Hymenoptera; Formicidae),
4 April 2021, collected by Xing-Can Peng (holotype HKAS 122630; ex-type living culture CS21040411).
description: Published as part of Peng, Xing-Can, Xiao, Yuan-Pin, Zhang, Yan, Chomnunti, Putarak, Tangtrakulwanich, Khanobporn & Wen, Ting-Chi, 2023, Cordyceps poluscapitis sp. nov., an ant-pathogenic fungus from Guizhou, China, pp. 239-251 in Phytotaxa 599 (4) on pages 245-247, DOI: 10.11646/phytotaxa.599.4.3, http://zenodo.org/record/8030209
Samuel Browne’s late 17th century Indian herbarium: identifications and early modern taxonomic practice
Creators: name: Prakash, Ranee Om
name: Whitefoord, Caroline
name: Kumar, V. Sampath
name: Arisdason, Wilson
name: Singh, Rajdeo
name: Hawkins, Julie A.
name: Carine, Mark A.
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Plant Biology

description: Samuel Browne (b.-? d. 21st December 1698) was a surgeon employed by the English East India Company (EIC) at Fort St. George, Madras (now Chennai) in India. In 1697, Browne sent a herbarium of 316 specimens collected in and around Chennai to the EIC. Many of those specimens were accompanied with vernacular names, descriptions and notes on their properties and uses. Browne’s specimens were studied by James Petiver who published descriptions with Browne as co-author. Those descriptions made reference to polynomial names in many other published works. In this paper we present a description of the Browne herbarium and identifications for all specimens, with 313 of the 316 specimens identified to species level. We also examine how knowledge from the specimens sent by Browne was integrated with existing knowledge in published works. We show that specimens with a medicinal or other use recorded by Browne were more extensively referenced to other literature than those with no use documented, likely reflecting the fact that plants with documented uses were more likely to have been studied previously. Contrary to our expectations, we found no difference in the extent of referencing to other works when comparing widespread species with species endemic to the Indian subcontinent. The ethnobotanical information recorded in Browne’s herbarium, used in conjunction with the identifications provided in this paper, provides a unique resource for understanding plants in 17th century Tamil Nadu and Andhra Pradesh.
A systematic path to non-Markovian dynamics: New response pdf evolution equations under Gaussian coloured noise excitation
Creators: name: Mamis, K. I.
name: Athanassoulis, G. A.
name: Kapelonis, Z. G.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences
subject: 34F05 (Primary) 82C31, 93E03, 60G99 (Secondary)

description: Determining evolution equations governing the probability density function (pdf) of non-Markovian responses to random differential equations (RDEs) excited by coloured noise, is an important issue arising in various problems of stochastic dynamics, advanced statistical physics and uncertainty quantification of macroscopic systems. In the present work, such equations are derived for a scalar, nonlinear RDE under additive coloured Gaussian noise excitation, through the stochastic Liouville equation. The latter is an exact, yet non-closed equation, involving aver-ages over the time history of the non-Markovian response. This nonlocality is treated by applying an extension of the Novikov-Furutsu theorem and a novel approximation, employing a stochastic Volterra-Taylor functional expansion around instantaneous response moments, leading to efficient, closed, approximate equations for the response pdf. These equations retain a tractable amount of nonlocality and nonlinearity, and they are valid in both the transient and long-time regimes for any correlation function of the excitation. Also, they include as special cases various existing relevant models, and generalize Hanggi's ansatz in a rational way. Numerical results for a bistable nonlinear RDE confirm the accuracy and the efficiency of the new equations. Extension to the multidimensional case (systems of RDEs) is feasible, yet laborious.
Electromagnetic Force and the Maxwell Stress Tensor in Condensed Systems
Creators: name: Liu, Mario
name: Stierstadt, Klaus
Publisher: name: arXiv
Year: 2000
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: While the electromagnetic force is microscopically simply the Lorentz force, its macroscopic form is more complicated, and given by expressions such as the Maxwell stress tensor and the Kelvin force. Their derivation is fairly opaque, at times even confusing, and their range of validity all but a well kept secret. These circumstances unnecessarily reduce the usefulness and trustworthiness of some key quantities in macroscopic electrodynamics. This article presents a thorough yet pedagogical derivation of the Maxwell stress tensor and electromagnetic force in condensed media. It starts from universally accepted inputs: conservation laws, thermodynamics and the Maxwell equations. Simplifications are considered for various limits, especially the equilibrium, with a range of validity assigned to each expression. Some widespread misconceptions are scrutinized, and hidden ambiguities in popular notations revealed. A number of phenomena typical of strongly polarizable systems, especially ferrofluid, are then considered. In addition to enhancing the appreciation of these systems, it helps to solidify the grasp of the introduced concepts and derived formulas, and it demonstrates the ease with which the Maxwell stress tensor can be handled, inviting theorists and experimentalists alike to embrace this useful quantity.
description: 27 pages, 7 fig
Enhancement of structural rearrangement in glassy systems under shear flow
Creators: name: Corberi, F.
name: Gonnella, G.
name: Suppa, D.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We extend the analysis of the mean field schematic model recently introduced for the description of glass forming liquids to the case of a supercooled fluid subjected to a shear flow of rate $γ$. After quenching the system to a low temperature $T$, a slow glassy regime is observed before stationarity is achieved at the characteristic time $τ_g$. $τ_g$ is of the order of the usual equilibration time without shear $τ_g^o$ for weak shear, $γτ_g ^o<1$. For larger shear, $γτ_g ^o>1$, local rearrangement of dense regions is instead enhanced by the flow, and $τ_g \simeq 1/(Tγ)$.
description: 8 pages, 3 figures, changed content Pacs{64}{70.Pf}{Glass transitions} Pacs{05}{70.Ln}{Non-equilibrium thermodynamics, irreversible processes} Pacs{83}{50.Ax}{Steady shear flows}
Additional file 1 of Translation, cross-cultural adaptation, and validation of the 10-item spine functional index (SFI-10) in the Brazilians with musculoskeletal spine disorders
Creators: name: do Nascimento Freitas, Devyd Weyder
name: Dibai-Filho, Almir Vieira
name: Pontes-Silva, André
name: Araujo, Gabriel Gardhel Costa
name: de Oliveira, Augusto Ribeiro
name: da Cunha Leal, Plinio
name: Gabel, Charles Philip
name: Fidelis-de-Paula-Gomes, Cid André
name: Cabido, Christian Emmanuel Torres
Publisher: name: figshare
Year: 2024
Subjects: subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Supplementary Material 1.
Samuel Browne’s late 17th century Indian herbarium: identifications and early modern taxonomic practice
Creators: name: Prakash, Ranee Om
name: Whiteford, Caroline
name: Kumar, V. Sampath
name: Arisdason, Wilson
name: Singh, Rajdeo
name: Hawkins, Julie A.
name: Carine, Mark A.
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Plant Biology

description: Samuel Browne (b.-? d. 21st December 1698) was a surgeon employed by the English East India Company (EIC) at Fort St. George, Madras (now Chennai) in India. In 1697, Browne sent a herbarium of 316 specimens collected in and around Chennai to the EIC. Many of those specimens were accompanied with vernacular names, descriptions and notes on their properties and uses. Browne’s specimens were studied by James Petiver who published descriptions with Browne as co-author. Those descriptions made reference to polynomial names in many other published works. In this paper we present a description of the Browne herbarium and identifications for all specimens, with 313 of the 316 specimens identified to species level. We also examine how knowledge from the specimens sent by Browne was integrated with existing knowledge in published works. We show that specimens with a medicinal or other use recorded by Browne were more extensively referenced to other literature than those with no use documented, likely reflecting the fact that plants with documented uses were more likely to have been studied previously. Contrary to our expectations, we found no difference in the extent of referencing to other works when comparing widespread species with species endemic to the Indian subcontinent. The ethnobotanical information recorded in Browne’s herbarium, used in conjunction with the identifications provided in this paper, provides a unique resource for understanding plants in 17th century Tamil Nadu and Andhra Pradesh.
title: 19_F_VUILLERME-DUNAND_LeCharivari_FR_GAD
Creators: name: Vuillerme-Dunand, Victor-Napoléon
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2024
Subjects: subject: PuppetPlays
subject: Horizon 2020
subject: Plassard, Didier
subject: Guignol (personnage fictif)

description: MAM - Musée des Arts de la Marionnette (Musée Gadagne). B29/R paquet 6/pochette 78
Reliure en mauvais état. Manuscrit. Visa de la Préfecture du Rhône. Même folio que "Le dentiste"

Numérisé dans le cadre du projet ERC PuppetPlays, financé par le Programme de recherche et d'innovation Horizon 2020 de l'Union Européenne (Grant Agreement 835193).
description: Digitized by the ERC project PuppetPlays, receiving funding from the European Union's Horizon 2020 research and innovation programme under Grant Agreement ERC 835193.
Scaling Distribution of Axionic Strings and Estimation of Axion Density from Axionic Domain Walls
Creators: name: NAGASAWA, Michiyasu
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The damping of the axionic string motion due to the surrounding plasma is estimated by a detailed calculation of the fermion scatter from a global string and it is shown that the friction force on the string can be neglected before the axionic domain wall formation in most cases, which is one of the important necessary conditions for the scaling distribution of the strings. The energy density of the axion produced by the collapse of the axionic domain walls is also evaluated using the axionic string distribution, and it is found to be larger or at least comparable to the axion density which originates from the axionic strings.
description: 20 pages (LaTeX), 3 figures, eclepsf.sty, revised figures
Rapport de fin de campagne de nourriceries côtières : Campagne Nourmont 2021
Creators: name: Varenne, Fanchon
name: Schlaich, Ivan
Publisher: name: IFREMER
Year: 2022
Subjects: Fonctionnement des nourriceries côtières
dynamique temporelle
communautés bentho-démersales
campagne en mer
DCSMM

description: Dans le cadre de la mise en œuvre du programme de surveillance de la Directive Cadre Stratégie pour le Milieu Marin (DCSMM), le suivi des poissons et céphalopodes démersaux des milieux meubles côtiers a été jugé prioritaire. Pour ce faire, une série de campagnes halieutiques récurrentes a été déployée dans les nourriceries côtières, constituant des habitats essentiels pour de nombreuses espèces marines. La caractérisation de l’état écologique des peuplements et l’étude de la fonctionnalité des habitats de nourriceries s’avèrent nécessaires au calcul des indicateurs du Bon Etat Ecologique requis par la DCSMM et primordiales pour la mise en place de mesures de gestion écosystémique garantissant des usages durables. La campagne Nourmont conduite dans la baie du Mont-Saint-Michel pour la première fois sous cette forme s'inscrit donc dans le programme de surveillance des « Poissons-céphalopodes », le présent rapport décrit les caractéristiques de la campagne Nourmont réalisée en baie du Mont-Saint-Michel du 28 au 30 septembre 2021 et le 27 octobre 2021.
Deviations from Fermi-Liquid behaviour in (2+1)-dimensional Quantum Electrodynamics and the normal phase of high-$T_c$ Superconductors
Creators: name: Aitchison, I. J. R.
name: Mavromatos, N. E.
Publisher: name: arXiv
Year: 1995
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Condensed Matter (cond-mat)
subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We argue that the gauge-fermion interaction in multiflavour quantum electrodynamics in $(2 + 1)$-dimensions is responsible for non-fermi liquid behaviour in the infrared, in the sense of leading to the existence of a non-trivial (quasi) fixed point that lies between the trivial fixed point (at infinite momenta) and the region where dynamical symmetry breaking and mass generation occurs. This quasi-fixed point structure implies slowly varying, rather than fixed, couplings in the intermediate regime of momenta, a situation which resembles that of (four-dimensional) `walking technicolour' models of particle physics. The inclusion of wave-function renormalization yields marginal $O(1/N)$-corrections to the `bulk' non-fermi liquid behaviour caused by the gauge interaction in the limit of infinite flavour number. Such corrections lead to the appearance of modified critical exponents. In particular, at low temperatures there appear to be logarithmic scaling violations of the linear resistivity of the system of order $O(1/N)$. Connection with the anomalous normal-state properties of certain condensed matter systems relevant for high-temperature superconductivity is briefly discussed. The relevance of the large (flavour) $N$ expansion to the fermi-liquid problem is emphasized. As a partial result of our analysis, we point out the absence of Charge-Density-Wave Instabilities from the effective low-energy theory, as a consequence of gauge invariance.
description: Latex file, 35 pages, Two figures not included, available upon request
E1 EESC USP: documentação digital para preservação, conservação e manutenção
Creators: name: CERÁVOLO, ANA LÚCIA
name: Cuperschmid, Ana Regina
name: Fabricio, Márcio Minto
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 330103
subject: Architectural heritage and conservation
classificationCode: 330105
subject: Architectural science and technology

description: O extenso patrimônio arquitetônico moderno brasileiro, construído no século XX, está se degradando e sendo perdido, ou descaracterizado pelo descaso, ou por dificuldades na sua conservação. O trabalho proposto está sendo desenvolvido por pesquisadores de diversas instituições em torno do projeto HBIM e Documentação digital do patrimônio arquitetônico moderno: Desenvolvimento de Protocolo a partir de Estudo de Caso no edifício E1, financiado pelo CNPq. A pesquisa preliminar possui dois eixos de desenvolvimentos principais: a) investigação em acervos e em documentos de época para conhecer melhor a história da construção do E1; e b) desenvolvimento de modelo Heritage Building Information Modeling (HBIM) através de levantamentos atuais sobre o estado de conservação, patologias e degradação da edificação. Para tanto, foram realizadas medições e avaliações tradicionais, associadas à documentação digital através de varredura a laser com escaneamento 3D, fotogrametria digital, Dense Stereo Matching (DSM) e outras tecnologias disponíveis hoje no mercado, que permitem aferições precisas e não invasivas. O E1 é a sede da Escola de Engenharia de São Carlos, da Universidade de São Paulo, que foi projetado pelo arquiteto Hélio de Queiroz Duarte (1906-1989) e o engenheiro Ernest de Carvalho Mange (1922- 2005), na década de 1950. Como indica Ana Luiza Nobre (2007), trata-se de uma obra singular, sobretudo por sua contribuição para o debate da industrialização das construções no país. “(...) erguida à distância dos grandes centros urbanos, em meados dos anos 50, (...) assume significado especial pela concepção de projeto que anuncia” (NOBRE, 2007, P. 22). O presente artigo apresenta os resultados dos levantamentos históricos e in loco; assim como a sistematização dessas informações num inventário, que agrupa as informações necessárias para elaboração de um modelo HBIM. Pretende ainda discutir as dificuldades e as potencialidades na associação de metodologias e tecnologias de trabalho até então situadas em campos disciplinares distintos, como teoria e história da arquitetura, coordenação de projetos, tecnologia e patologia das construções. O estudo pretende colaborar com o debate acerca da preservação e utilização de tecnologias digitais para documentação de edificações, com o intuito de estruturar uma metodologia que contribua para a elaboração do modelo pretendido do E1. Pretende ainda contribuir para a valorização do patrimônio moderno, colaborando no esforço conjunto de documentar o extenso acervo moderno existente no país e disseminando o uso das novas tecnologias no meio profissional e acadêmico.
The Range of Validity for the Kelvin Force
Creators: name: Liu, Mario
Publisher: name: arXiv
Year: 2000
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: In a recent Letter, Luo, Du and Huang reported a novel convective instability driven by a force rarely studied before -- that exerted by an external magnetic field on a strongly magnetizable liquid. The associated physics is surprisingly rich and promises many more interesting results for the future. Unfortunately, the analysis starts from a misconception and employs the Kelvin force outside its range of validity. Since few would recognize this as a mistake, and since its consequence in the given experiment is particularly direct and critical, this is a point well worth being clarified, and clearly understood.
description: 1 page
Rotation numbers and the Euler class in open books
Creators: name: Durst, Sebastian
name: Kegel, Marc
name: Licata, Joan E.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Geometric Topology (math.GT)
subject: Symplectic Geometry (math.SG)
subject: FOS: Mathematics

description: This paper introduces techniques for computing a variety of numerical invariants associated to a Legendrian knot in a contact manifold presented by an open book with a Morse structure. Such a Legendrian knot admits a front projection to the boundary of a regular neighborhood of the binding. From this front projection, we compute the rotation number for any null-homologous Legendrian knot as a count of oriented cusps and linking or intersection numbers; in the case that the manifold has non-trivial second homology, we can recover the rotation number with respect to a Seifert surface in any homology class. We also provide explicit formulas for computing the necessary intersection numbers from the front projection, and we compute the Euler class of the contact structure supported by the open book. Finally, we introduce a notion of Lagrangian projection and compute the classical invariants of a null-homologous Legendrian knot from its projection to a fixed page.
description: 18 pages, 8 figures; V2: Minor corrections, to appear in Michigan Math. J
ARROW. AtmospheRic inFRasound by Ocean Waves. Product User Manual
Creators: name: Accensi, Mickael
name: De Carlo, Marine
Publisher: name: IFREMER
Year: 2024

description: The ARROW (AtmospheRic infRasound by Ocean Waves) product forms a database of coherent ocean-generated noise (so-called microbaroms) acoustic power in the atmosphere. Microbarom acoustic power is estimated from the Hasselmann Integral computed by the spectral wave model WAVEWATCH-III (r) at global scale in realtime. Public acoustic data is provided with a 6-month delay. ARROW was developed as part of Marine De Carlo’s PhD thesis (2018-2021), funded by the Commissariat à l’Energie Atomique et aux Energies Alternatives and directed by Fabrice Adhuin from IFREMER, Laboratoire d’Oceanographie Physique et Spatiale (LOPS).
In the framework of this thesis, a new theoretical description of the mechanism of infrasound generation connecting the pressure amplitude to the height and frequency wave oscillation has been proposed. Hence, the characterization of atmospheric ambient noise originating from the ocean with application to long-range acoustic propagation has been achieved. Between 0.1 and 0.6 Hz, infrasound signals recorded in the atmosphere are dominated by microbaroms. Microbaroms propagate through the atmosphere over thousands of kilometres due to low absorption and efficient ducting between the ground and the stratopause.
Different theoretical models have been developed to characterize the source of microbaroms, all based on the second-order nonlinear interaction of ocean waves. These interactions are represented by a quantity called the Hasselmann integral which is the integral over all directions of the product of the energy present in waves propagating in quasi-opposite directions, at a given frequency. From these considerations, a unified microbarom source and application to radiation patterns by ocean waves has been proposed by Marine de Carlo in 2020 ( https://doi.org/10.1093/gji/ggaa015 ). This theoretical work reviews earlier models and extends previous theories to the combined effects of both finite depth ocean and source directivity. Global modelling of microbaroms and comparison with infrasound observations of the International Monitoring System (IMS) set up to monitor compliance with the Comprehensive Nuclear-Test-Ban Treaty (CTBT) shows that the water depth has a negligible effect for the near-horizontally propagating acoustic waves that dominate microbarom records (https://doi.org/10.1029/2020GL090163).
Using the ARROW product, a better characterization of the coherent ambient noise allows to limit the number of false alarms, thus improving the detection capabilities of the IMS. Furthermore, comparisons between the simulated and microbarom signals globally and continuously observed provide a basis for investigation into geophysical inverse problems. Hence, one foreseen application is the assessment of Numerical Weather Prediction (NWP) models, which are poorly constrained in the middle atmosphere (~10-90 km). This application would pave the way for innovative atmospheric remote sensing method intended to feed data assimilation frameworks.
Cooper problem in the vicinity of Anderson transition
Creators: name: Lages, J.
name: Shepelyansky, D. L.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: We study numerically the ground state properties of the Cooper problem in the three-dimensional Anderson model. It is shown that attractive interaction creates localized pairs in the metallic noninteracting phase. This localization is destroyed at sufficiently weak disorder. The phase diagram for the delocalization transition in the presence of disorder and interaction is determined.
description: revtex, 4 pages, 4 figures
Multiple Rayleigh scattering of electromagnetic waves
Creators: name: Amic, E.
name: Luck, J. M.
name: Nieuwenhuizen, Th. M.
Publisher: name: arXiv
Year: 1996
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: Multiple scattering of polarised electromagnetic waves in diffusive media is investigated by means of radiative transfer theory. The method becomes exact in several situations of interest, such as a thick-slab experiment (slab thickness L >> mean free path $\ell >> wavelength λ)$. The present study is restricted to Rayleigh scattering. It incorporates in a natural way the dependence on the incident and detected polarisations, and takes full account of the internal reflections at the boundaries of the sample, due to the possible mismatch between the mean optical index n of the medium and that n_1 of the surroundings. Quantities of interest, such as the polarisation-dependent angle-resolved mean diffuse intensity in reflection and in transmission and the shape of the cone of enhanced backscattering, are predicted in terms of solutions to Schwarzschild-Milne equations. The latter are obtained analytically both in the absence of internal reflections and in the regime of a large index mismatch.
description: To appear in Journal de Physique I (March 1997). Figures available upon email request to luck@spht.saclay.cea.fr
Additional file 1 of Expression of antibody fragments in Saccharomyces cerevisiae strains evolved for enhanced protein secretion
Creators: name: Wang, Yanyan
name: Li, Xiaowei
name: Chen, Xin
name: Nielsen, Jens
name: Petranovic, Dina
name: Siewers, Verena
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Evolutionary Biology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Figure S1. The original images of the western blots of supernatant from recombinant HA host strains. Figure S2. Expression of Pex after R130K codon mutation. Figure S3. Influence of BSA in the medium on protein production. Figure S4. Binding activity of Nan, Pex and Ran fragments after immunoprecipitation. Figure S5. Pull-down assay for assessing the biological activity. Figure S6. Growth phenotype of different strains expressing antibody fragments. Figure S7. The original images of the western blots of three different host strains for each protein. Figure S8. Global transcriptional response to the expression of Nan and Pex in LA and MA strains. Figure S9. The impact of modified genes on Pex secretion in the LA.Pex strain. Figure S10. Effect of changes in glycine concentration on protein production. Figure S11. Gene set enrichment analysis.
Finite Size Scaling at the Topological Transition: Bilinear-Biquadratic Spin-1 Chain
Creators: name: Wang, Yuting
name: Zhang, Hao
name: Kamenev, Alex
Publisher: name: arXiv
Year: 2019
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We consider a finite size scaling function across a topological phase transition in 1D models. For models of non-interacting fermions it was shown to be universal for all topological symmetry classes and markedly asymmetric between trivial and topological sides of the transition (Gulden et al 2016). Here we verify its universality for the topological transition between dimerized and Haldane phases in bilinear-biquadratic spin-1 chain. To this end we perform high-accuracy variational matrix product state simulations. We show that the scaling function, expressed in terms of $L/ξ$, where $L$ is the chain length and $ξ$ is the correlation length, coincides with that of three species of non-interacting massive Majorana fermions. The latter is known to be a proper description of the conformal critical theory with central charge $c=3/2$. We have shown that it still holds away from the conformal point, including the finite size corrections. We have also observed peculiar differences between even and odd size chains, which may be fully accounted for by residual interactions of the edge states.
Diffractive Production of Jets and Weak Bosons, and Tests of Hard-Scattering Factorization
Creators: name: Alvero, Lyndon
name: Collins, John C.
name: Terron, Juan
name: Whitmore, Jim
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We extract diffractive parton densities from data on diffractive deep inelastic scattering (DIS) and on diffractive photoproduction of jets. We explore the results of several ansaetze for the functional form of the parton densities. Then we use the fitted parton densities to predict the diffractive production of jets and of W's and Z's in p-pbar collisions at the Tevatron. To fit the photoproduction data requires a large gluon density in the Pomeron. The predictions for the Tevatron cross sections are substantially higher than data; this signals a breakdown of hard-scattering factorization in diffractive hadron-hadron collisions.
description: 36 pages, RevTeX with psfig and amsfonts, 12 postscript figures. This paper is an updated version of hep-ph/9701374. Further minor corrections added to correspond to journal version
Antiferromagnetic Excitations and Van Hove Singularities in YBa$_2$Cu$_3$O$_{6+x}$
Creators: name: Blumberg, G.
name: Stojkovic, Branko P.
name: Klein, M. V.
Publisher: name: arXiv
Year: 1995
Subjects: subject: Condensed Matter (cond-mat)
subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We show that in quasi-two-dimensional $d$-wave superconductors Van Hove singularities close to the Fermi surface lead to novel magnetic quasi-particle excitations. We calculate the temperature and doping dependence of dynamical magnetic susceptibility for YBCO and show that the proposed excitations are in agreement with inelastic neutron scattering experiments. In addition, the values of the gap parameter and in-plane antiferromagnetic coupling are much smaller than usually believed.
description: REVTeX, 4 pages + 3 PostScript (compressed) figures; to appear in Phys. Rev. B (Rap. Comm.)
First-Principles Wannier Functions of Silicon and Gallium Arsenide
Creators: name: Fernández, Pablo
name: Corso, Andrea Dal
name: Mauri, Francesco
name: Baldereschi, Alfonso
Publisher: name: arXiv
Year: 1996
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We present a self-consistent, real-space calculation of the Wannier functions of Si and GaAs within density functional theory. We minimize the total energy functional with respect to orbitals which behave as Wannier functions under crystal translations and, at the minimum, are orthogonal. The Wannier functions are used to calculate the total energy, lattice constant, bulk modulus, and the frequency of the zone-center TO phonon of the two semiconductors with the accuracy required nowadays in ab-initio calculations. Furthermore, the centers of the Wannier functions are used to compute the macroscopic polarization of Si and GaAs in zero electric field. The effective charges of GaAs, obtained by finite differentiation of the polarization, agree with the results of linear response theory.
description: 12 pages, 2 PostScript figures, RevTeX, to appear in Physical Review B
Classification of triples of lattice polytopes with a given mixed volume
Creators: name: Averkov, Gennadiy
name: Borger, Christopher
name: Soprunov, Ivan
Publisher: name: arXiv
Year: 2019
Subjects: subject: Combinatorics (math.CO)
subject: Algebraic Geometry (math.AG)
subject: FOS: Mathematics
subject: 14M25, 52B20, 52A39, 52A38, 52B10

description: We present an algorithm for the classification of triples of lattice polytopes with a given mixed volume $m$ in dimension 3. It is known that the classification can be reduced to the enumeration of so-called irreducible triples, the number of which is finite for fixed $m$. Following this algorithm, we enumerate all irreducible triples of normalized mixed volume up to 4 that are inclusion-maximal. This produces a classification of generic trivariate sparse polynomial systems with up to 4 solutions in the complex torus, up to monomial changes of variables. By a recent result of Esterov, this leads to a description of all generic trivariate sparse polynomial systems that are solvable by radicals.
description: 26 pages, additional appendix of 34 pages
Diboson at the LHC vs LEP
Creators: name: Grojean, Christophe
name: Montull, Marc
name: Riembau, Marc
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We use the current CMS and ATLAS data for the leptonic $pp \to WW, WZ$ channels to show that diboson production is, for a broad class of flavour models, already competitive with LEP-1 measurements for setting bounds on the dimension six operators parametrising the anomalous couplings between the quarks and the electroweak gauge bosons, at least under the assumption that any new particle is heavier than a few TeV. We also make an estimate of the HL-LHC reach with $3$ ab$^{-1}$. We comment on possible BSM interpretations of the bounds, and show the interplay with other searches for a simplified model with vector triplets. We further study the effect of modified $Z$-quark-quark couplings on the anomalous triple gauge coupling bounds. We find that their impact is already significant and that it could modify the constraints on $δg_{1z}$ and $δκ_γ$ by as much as a factor two at the end of HL-LHC ($λ_γ$ is only marginally affected), requiring a global fit to extract robust bounds. We stress the role of flavour assumptions and study explicitly flavour universal and minimal flavour violation scenarios, illustrating the differences with results obtained for universal theories.
description: 45 pages, 17 figures. v2: published version, expanded discussion on UV models, additional plots to compare relative importance of WW and WZ channels
Additional file 8: of Predicting opioid dependence from electronic health records with machine learning
Creators: name: Ellis, Randall
name: Wang, Zichen
name: Genes, Nicholas
name: Maâayan, Avi
Publisher: name: figshare
Year: 2019
Subjects: Biological Sciences not elsewhere classified
Information Systems not elsewhere classified
Virology

description: Figure S8. Precision-recall curves for labs and vitals from the 20â days prior to substance dependence diagnosis, using classifiers with no imputation (A), imputation by the mean (B), imputation by the median (C). (PDF 199 kb)
The dynamical structure factor in disordered systems
Creators: name: Martín-Mayor, V.
name: Parisi, G.
name: Verrocchio, P.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: We study the spectral width as a function of the external momentum for the dynamical structure factor of a disordered harmonic solid, considered as a toy model for supercooled liquids and glasses. Both in the context of single-link coherent potential approximation and of a single-defect approximation, two different regimes are clearly identified: if the density of states at zero energy is zero, the Rayleigh $p^4$ law is recovered for small momentum. On the contrary, if the disorder induces a non vanishing density of states at zero energy, a linear behaviour is obtained. The dynamical structure factor is numerically calculated in lattices as large as $96^3$, and satisfactorily agrees with the analytical computations.
description: 7 pages plus 4 postscript figures
The Foundation Supernova Survey: Measuring Cosmological Parameters with Supernovae from a Single Telescope
Creators: name: Jones, D. O.
name: Scolnic, D. M.
name: Foley, R. J.
name: Rest, A.
name: Kessler, R.
name: Challis, P. M.
name: Chambers, K. C.
name: Coulter, D. A.
name: Dettman, K. G.
name: Foley, M. M.
name: Huber, M. E.
name: Jha, S. W.
name: Johnson, E.
name: Kilpatrick, C. D.
name: Kirshner, R. P.
name: Manuel, J.
name: Narayan, G.
name: Pan, Y. -C.
name: Riess, A. G.
name: Schultz, A. S. B.
name: Siebert, M. R.
name: Berger, E.
name: Chornock, R.
name: Flewelling, H.
name: Magnier, E. A.
name: Smartt, S. J.
name: Smith, K. W.
name: Wainscoat, R. J.
name: Waters, C.
name: Willman, M.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: Measurements of the dark energy equation-of-state parameter, $w$, have been limited by uncertainty in the selection effects and photometric calibration of $z<0.1$ Type Ia supernovae (SNe Ia). The Foundation Supernova Survey is designed to lower these uncertainties by creating a new sample of $z<0.1$ SNe Ia observed on the Pan-STARRS system. Here, we combine the Foundation sample with SNe from the Pan-STARRS Medium Deep Survey and measure cosmological parameters with 1,338 SNe from a single telescope and a single, well-calibrated photometric system. For the first time, both the low-$z$ and high-$z$ data are predominantly discovered by surveys that do not target pre-selected galaxies, reducing selection bias uncertainties. The $z>0.1$ data include 875 SNe without spectroscopic classifications and we show that we can robustly marginalize over CC SN contamination. We measure Foundation Hubble residuals to be fainter than the pre-existing low-$z$ Hubble residuals by $0.046 \pm 0.027$ mag (stat+sys). By combining the SN Ia data with cosmic microwave background constraints, we find $w=-0.938 \pm 0.053$, consistent with $Λ$CDM. With 463 spectroscopically classified SNe Ia alone, we measure $w=-0.933\pm0.061$. Using the more homogeneous and better-characterized Foundation sample gives a 55% reduction in the systematic uncertainty attributed to SN Ia sample selection biases. Although use of just a single photometric system at low and high redshift increases the impact of photometric calibration uncertainties in this analysis, previous low-$z$ samples may have correlated calibration uncertainties that were neglected in past studies. The full Foundation sample will observe up to 800 SNe to anchor the LSST and WFIRST Hubble diagrams.
description: 30 pages, 17 figures, accepted by ApJ
Speculative bubbles and crashes in stock market: an interacting-agent model of speculative activity
Creators: name: Kaizoji, Taisei
Publisher: name: arXiv
Year: 2000
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: General Finance (q-fin.GN)
subject: FOS: Physical sciences
subject: FOS: Economics and business

description: We present an interacting-agent model of speculative activity explaining bubbles and crashes in stock markets. We describe stock markets through an infinite-range Ising model to formulate the tendency of traders getting influenced by the investment attitude of other traders. Bubbles and crashes are understood and described qualitatively and quantitatively in terms of the classical phase transitions. The results of estimation the parameters of the model using the actual financial data (the bubble and the subsequent crash in the Japanese stock market in 1987-1992) show that the good quality of the fits, as well as the consistency of the values of the parameters.
description: 11 pages, 6 figures
The Role of Scalar and Pseudoscalar Fields in Determining Nucleosynthesis Bounds on the Scale of Supersymmetry Breaking
Creators: name: Gherghetta, Tony
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The effect of spin-0 goldstino superpartners is considered on the nucleosynthesis bounds arising when a superlight gravitino appears as an effective massless neutrino species. When the scalar and pseudoscalar superpartners are relativistic they will decouple at much later times than the goldstino and consequently will be the dominant effect when obtaining a nucleosynthesis bound on the scale of supersymmetry breaking. Assuming that the scalar and pseudoscalar fields decouple at a temperature no later than O(100) MeV, then typically the scale of supersymmetry breaking \sqrt{F} > 60 TeV. This corresponds to a lower bound on the gravitino mass m_{3/2} > 1 eV.
description: 12 pages, 1 figure; Version to be published in Phys. Lett. B
Cnidaria
Creators: name: Neuhaus, Birger
name: Pardos, Fernando
name: Storch, Volker
name: Kristensen, Reinhardt M.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Cnidaria

description: Cnidaria   Cryptohydra thieli Thomas, Edwards & Higgins, 1995
description: Published as part of Neuhaus, Birger, Pardos, Fernando, Storch, Volker & Kristensen, Reinhardt M., 2023, Robert Price Higgins-Aspects of his life and his contributions to meiobenthic research (1932 - 2022), pp. 219-245 in Zootaxa 5301 (2) on page 236, DOI: 10.11646/zootaxa.5301.2.4, http://zenodo.org/record/8030342
Thermal behavior of Quantum Cellular Automaton wires
Creators: name: Ungarelli, C.
name: Francaviglia, S.
name: Macucci, M.
name: Iannaccone, G.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: We investigate the effect of a finite temperature on the behavior of logic circuits based on the principle of Quantum Cellular Automata (QCA) and of ground state computation. In particular, we focus on the error probability for a wire of QCA cells that propagates a logic state. A numerical model and an analytical, more approximate, model are presented for the evaluation of the partition function of such a system and, consequently, of the desired probabilities. We compare the results of the two models, assessing the limits of validity of the analytical approach, and provide estimates for the maximum operating temperature.
description: 15 pages, 7 figures, uses revtex
Fully numerical Hartree-Fock and density functional calculations. I. Atoms
Creators: name: Lehtola, Susi
Publisher: name: arXiv
Year: 2018
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: Atomic Physics (physics.atom-ph)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: Although many programs have been published for fully numerical Hartree--Fock (HF) or density functional (DF) calculations on atoms, we are not aware of any that support hybrid DFs, which are popular within the quantum chemistry community due to their better accuracy for many applications, or that can be used to calculate electric properties. Here, we present a variational atomic finite element solver in the HelFEM program suite that overcomes these limitations. A basis set of the type $χ_{nlm}(r,θ,ϕ)=r^{-1}B_{n}(r)Y_{l}^{m}(\hat{\boldsymbol{r}})$ is used, where $B_{n}(r)$ are finite element shape functions and $Y_{l}^{m}$ are spherical harmonics, which allows for an arbitrary level of accuracy. HelFEM supports nonrelativistic HF and DF including hybrid functionals, which are not available in other commonly available program packages. Hundreds of functionals at the local spin density approximation (LDA), generalized gradient approximation (GGA), as well as the meta-GGA levels of theory are included through an interface with the Libxc library. Electric response properties are achievable via finite field calculations. We introduce an alternative grid that yields faster convergence to the complete basis set than commonly used alternatives. We also show that high-order Lagrange interpolating polynomials yield the best convergence, and that excellent agreement with literature HF limit values for electric properties, such as static dipole polarizabilities, can be achieved with the present approach. Dipole moments and dipole polarizabilities at finite field are reported with the PBE, PBEh, TPSS, and TPSSh functionals. Finally, we show that a recently published Gaussian basis set is able to reproduce absolute HF and DF energies of neutral atoms, cations, as well as anions within a few dozen microhartrees.
description: 44 pages, 11 figures. Small reorganization of intro
Additional file 3: of Unexpected invasion of miniature inverted-repeat transposable elements in viral genomes
Creators: name: Zhang, Hua-Hao
name: Zhou, Qiu-Zhong
name: Wang, Ping-Lan
name: Xiong, Xiao-Min
name: Luchetti, Andrea
name: Raoult, Didier
name: Levasseur, Anthony
name: Santini, Sebastien
name: Abergel, Chantal
name: Legendre, Matthieu
name: Drezen, Jean-Michel
name: BĂŠliveau, Catherine
name: Cusson, Michel
name: Jiang, Shen-Hua
name: Bao, Hai-Ou
name: Sun, Cheng
name: Bureau, Thomas
name: Cheng, Peng-Fei
name: Han, Min-Jin
name: Zhang, Ze
name: Zhang, Xiao-Gu
name: Dai, Fang-Yin
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Figure S1. Characteristics of ten MITEs from the viral genomes. A Multiple alignments of full-length copies as well as the flanking sequences of each MITE. TSD is shown in red and the boundary is indicated using black shading. B One empty paralogous site of CMC-NA_1_GfIV. C Secondary structure of ten MITEs. D Length distribution of MITEs with more than 14 copies in one viral genome. E Nucleotide genetic distances between each MITE copy and the corresponding consensus sequences. Only MITEs with reliable consensus sequences in one virus were included in this analysis. Because more than 50% copies of hAT-NA5_PD were shorter than 50% length of the consensus sequence, and it was also excluded in this analysis. Species abbreviations of viruses were listed in Additional file 1: Table S1. (PDF 3703Â kb)