cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
The Global Star-Formation Law by Supernova Feedback
Creators: name: Dekel, Avishai
name: Sarkar, Kartick C.
name: Jiang, Fangzhou
name: Bournaud, Frederic
name: Krumholz, Mark R.
name: Ceverino, Daniel
name: Primack, Joel R.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We address a simple model where the Kennicutt-Schmidt (KS) relation between the macroscopic densities of star-formation rate (SFR, $ρ_{\rm sfr}$) and gas ($n$) in galactic discs emerges from self-regulation of the SFR via supernova feedback. It arises from the physics of supernova bubbles, insensitive to the microscopic SFR recipe and not explicitly dependent on gravity. The key is that the filling factor of SFR-suppressed supernova bubbles self-regulates to a constant, $f\sim 0.5$. Expressing the bubble fading radius and time in terms of $n$, the filling factor is $f \propto S\,n^{-s}$ with $s\sim 1.5$, where $S$ is the supernova rate density. A constant $f$ thus refers to $ρ_{\rm sfr} \propto n^{1.5}$, with a density-independent SFR efficiency per free-fall time $\sim 0.01$. The self-regulation to $f \sim 0.5$ and the convergence to a KS relation independent of the local SFR recipe are demonstrated in cosmological and isolated-galaxy simulations using different codes and recipes. In parallel, the spherical analysis of bubble evolution is generalized to clustered supernovae, analytically and via simulations, yielding $s \simeq 1.5 \pm 0.5$. An analysis of photo-ionized bubbles about pre-supernova stars yields a range of KS slopes but the KS relation is dominated by the supernova bubbles. Superbubble blowouts may lead to an alternative self-regulation by outflows and recycling. While the model is over-simplified, its simplicity and validity in the simulations may argue that it captures the origin of the KS relation.
Bayesian Blocks in Two or More Dimensions: Image Segmentation and Cluster Analysis
Creators: name: Scargle, Jeffrey D.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Numerical Analysis (math.NA)
subject: FOS: Mathematics

description: This paper describes an extension, to higher dimensions, of the Bayesian Blocks algorithm for estimating signals in noisy time series data (Scargle 1998, 2000). The mathematical problem is to find the partition of the data space with the maximum posterior probability for a model consisting of a homogeneous Poisson process for each partition element. For model M_{n}, attributing the data within region n of the data space to a Poisson process with a fixed event rate lambda_{n}, the global posterior is: P(M_{n}) = Phi(N,V) = Gamma(N+1)Gamma(V-N+1) / Gamma(V+2) = N!(V-N)!/(V+1)! . Note that lambda_{n} does not appear, since it has been marginalized, using a flat, improper prior. Other priors yield similar formulas. This expression is valid for a data space of any dimension. It depends on only N, the number of data points within the region, and V, the volume of the region. No information about the actual locations of the points enters this expression. Suppose two such regions, described by N_{1},V_{1} and N_{2},V_{2}, are candidates for being merged into one. From the above equation, construct a Bayes merge factor, giving the ratio of posteriors for the two regions merged and not merged, respectively: P(Merge) = Phi(N_{1}+N_{2},V_{1}+V_{2}) / Phi(N_{1},V_{1}) Phi(N_{2},V_{2}) . Then collect data points into blocks with a greedy cell coalescence algorithm.
description: 19 pages, MAXENT2001: Workshop on Bayesian Inference and Maximum Entropy Methods in Science and Engineering
Bulk quantities in nuclear collisions from running coupling $k_{T}$-factorization and hybrid simulations
Creators: name: Giannini, Andre V.
name: Grassi, Frédérique
name: Luzum, Matthew
Publisher: name: arXiv
Year: 2019
Subjects: subject: Nuclear Theory (nucl-th)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Starting from a Color Glass Condensate (CGC) framework, based on a running-coupling improved $k_T$-factorized formula, we calculate bulk observables in several heavy-ion collision systems. This is done in two ways: first we calculate the particle distribution directly implied from the CGC model, and we compare this to the case where it is instead used as initial conditions for a hybrid hydrodynamic simulation. In this way, we can assess the effects of hydrodynamic and hadronic evolution by quantifying how much they change the results from a pure initial state approach and, therefore, to what extent initial condition models can be directly compared to experimental data. We find that entropy production in subsequent hydrodynamic evolution can increase multiplicity by as much as 50\%. However, disregarding a single overall normalization factor, the centrality, energy, and system size dependence of charged hadron multiplicity is only affected at the $\sim$5\% level. Because of this, the parameter-free prediction for these dependencies gives reasonable agreement with experimental data whether or not hydrodynamic evolution is included. On the other hand, our model results are not compatible with the hypothesis that hydrodynamic evolution is present in large systems, but not small systems like p-Pb, in which case the dependence of multiplicity on system size would be stronger than seen experimentally. Moreover, we find that hydrodynamic evolution significantly changes the distribution of momentum, so that observables such as mean transverse momentum are very different from the initial particle production, and much closer to measured data. Finally, we find that a good agreement to anisotropic flow data cannot be achieved due to the large eccentricity generated by this model.
description: 11 pages, 8 figures
CV evolution: AM Her binaries and the period gap
Creators: name: Webbink, R. F.
name: Wickramasinghe, D. T.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: AM Her variables -- synchronised magnetic cataclysmic variables (CVs) -- exhibit a different period distribution from other CVs across the period gap. We show that non-AM Her systems may infiltrate the longer-period end of the period gap if they are metal-deficient, but that the position and width of the gap in orbital period is otherwise insensitive to other binary parameters (excepting the normalisation of the braking rate). In AM Her binaries, magnetic braking is reduced as the wind from the secondary star may be trapped within the magnetosphere of the white dwarf primary. This reduced braking fills the period gap from its short-period end as the dipole magnetic moment of the white dwarf increases. The consistency of these models with the observed distribution of CVs, both AM Her and non-AM Her type, provides compelling evidence supporting magnetic braking as the agent of angular momentum loss among long-period CVs, and its disruption as the explanation of the 2 - 3 hour period gap among nonmagnetic CVs.
description: 10 pages, 11 figures, to be published in MNRAS
Troglocheles Zacharda 1980
Creators: name: Zacharda, Miloslav
Publisher: name: Zenodo
Year: 2000
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Rhagidiidae
Troglocheles

description: Genus Troglocheles Zacharda, 1980
 Troglocheles Zacharda, 1980: 646 ±649
description: Published as part of Zacharda, Miloslav, 2000, New species of the genus Troglocheles (Acari: Prostigmata: Rhagidiidae) from Oetztal Alps, Tyrol, with a key to adult species of the genus, pp. 463-478 in Journal of Natural History 34 (3) on page 464, DOI: 10.1080/002229300299570, http://zenodo.org/record/5279608
Non-Stokes Drag Coefficient in Single-Particle Electrophoresis: New Insights on a Classical Problem
Creators: name: Liao, Maijia
name: Wei, Ming-Tzo
name: Xu, Shixin
name: Ou-Yang, H. Daniel
name: Sheng, Ping
Publisher: name: arXiv
Year: 2019
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We measured the intrinsic drag coefficient of a single charged particle by optically trapping the particle and applying an alternating electric field, and found it to be markedly different from that of the Stokes drag.
Pseudericthonius SCHELLENBERG 1926
Creators: name: Souza-Filho, Jesser F.
name: Serejo, Cristiana S.
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Amphipoda
Ischyroceridae
Pseudericthonius

description: GENUS PSEUDERICTHONIUS SCHELLENBERG, 1926
 Pseudericthonius Schellenberg, 1926: 385. – J.L. Barnard, 1969: 196. – J.L. Barnard, 1973: 26. J.L. Barnard & Karaman, 1991: 228. – Rauschert, 1997: 28.
 Diagnosis
Antenna 1 subequal to antenna 2; peduncular article 1 long and rectangular; accessory flagellum 1-articulate, rudimentary. Eyes present or absent. Mandibular palp well developed and 3-articulate. Maxilla 1 outer margin of inner plate with a row of setae. Gnathopod 1 carpus longer than propodus. Gnathopod 2 male carpochelate; carpus longer and larger than propodus. Gnathopod 2 female carpus longer than propodus. Coxae 1–7 wider than long. Coxa 4 margin smooth; posterior margin not excavated. Coxa 5 with posterodorsal lobe. Pereopods 3 and 4 merus equal in size. Pereopods 5–7 dactylus distal part (at least the propodus and dactylus) directed anteriorly, and with accessory spines. Pereopod 5 dissimilar to pereopods 6 and 7 (in shape and length); carpus short, lunate or reniform, and without denticles or spines on posteroventral margin. Pleosomite without lateral ridges. Pleopods peduncle slender and not expanded. Pleopod 2 inner ramus present, as long as outer ramus. Urosomite 1 without dorsal spines. Uropod 1 peduncle with distoventral
description: Published as part of Souza-Filho, Jesser F. & Serejo, Cristiana S., 2014, On the phylogeny of Ischyroceridae (Amphipoda, Senticaudata, Corophiida), with the description of a new genus and eight new species from deep-sea Brazilian waters, pp. 34-85 in Zoological Journal of the Linnean Society 170 (1) on page 75, DOI: 10.1111/zoj.12099, http://zenodo.org/record/5301847
Additional file 1: of Quantitative proteomic analysis reveals AK2 as potential biomarker for late normal tissue radiotoxicity
Creators: name: Lacombe, Jérôme
name: Brengues, Muriel
name: Mangé, Alain
name: Bourgier, Céline
name: Gourgou, Sophie
name: Pèlegrin, André
name: Ozsahin, Mahmut
name: Solassol, Jérôme
name: Azria, David
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer

description: Table S1. Patients’ characteristics according to the presence or not of grade ≥ 2 radiation-induced breast fibrosis (bf+). (PDF 38 kb)
Anesthesiology Pediatric Fetal Surgery for Myelomeingocele Repair Room Tips PolicyStat
Creators: name: Pearce, Bridget
name: Narreddy, Spurthy
Publisher: name: My University
Year: 2021

description: Fetal Surgery for Myelomeningocele Authors: Bridget Pearce, M.D., Spurthy Narreddy, M.D. Background: In 2011, a landmark study was published in the NEJM, entitled A Randomized Trial of Prenatal versus Postnatal Repair of Myelomeningocele (MMC) N Eng J med 2011; 364:993-1004, which showed that prenatal repair of MMC results in better neurologic function than postnatal repair. The study was called the Management of Myelomenigocele Study (MOMS), and they found there was less need for ventriculoperitoneal shunts and better motor function with intrauterine repair. Based on this information, parents are given the option to have fetal repair of MMC before 27 weeks gestational age. Preoperative preparation There is a multidisciplinary meeting the day before with OB, pediatric surgery, neurosurgery, cardiology, OB anesthesia, peds anesthesia, nursing, and project planners. Issues to be discussed are maternal co-morbidities, size of MMC defect, fetal lower extremity pathology and cerebral ventricular size. The OB faculty will indicate whether the parents wish to deliver and resuscitate the fetus in the event of an intraoperative catastrophic event. Important information for peds anesthetic: Estimated fetal weight (EFW).
Magical Number Seven Plus or Minus Two: Syntactic Structure Recognition in Japanese and English Sentences
Creators: name: Murata, Masaki
name: Uchimoto, Kiyotaka
name: Ma, Qing
name: Isahara, Hitoshi
Publisher: name: arXiv
Year: 2001
Subjects: subject: Computation and Language (cs.CL)
subject: FOS: Computer and information sciences
subject: H.3.3; I.2.7

description: George A. Miller said that human beings have only seven chunks in short-term memory, plus or minus two. We counted the number of bunsetsus (phrases) whose modifiees are undetermined in each step of an analysis of the dependency structure of Japanese sentences, and which therefore must be stored in short-term memory. The number was roughly less than nine, the upper bound of seven plus or minus two. We also obtained similar results with English sentences under the assumption that human beings recognize a series of words, such as a noun phrase (NP), as a unit. This indicates that if we assume that the human cognitive units in Japanese and English are bunsetsu and NP respectively, analysis will support Miller's $7 \pm 2$ theory.
description: 9 pages. Computation and Language. This paper is included in the book entitled by "Computational Linguistics and Intelligent Text Processing, Second International Conference, CICLing 2001, Mexico City, February 2001 Proceedings", Alexander Gelbukh (Ed.), Springer Publisher, ISSN 0302-9743, ISBN 3-540-41687-0
Quantum Corrected Polymer Black Hole Thermodynamics: Mass Relations and Logarithmic Entropy Correction
Creators: name: Mele, Fabio M.
name: Münch, Johannes
name: Pateloudis, Stratos
Publisher: name: arXiv
Year: 2021
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In this paper, we continue the analysis of the effective model of quantum Schwarzschild black holes recently proposed by some of the authors in [1,2]. In the resulting spacetime the central singularity is resolved by a black-to-white hole bounce, quantum effects become relevant at a unique mass independent curvature scale, while they become negligible in the low curvature region near the horizon and classical geometry is approached asymptotically. This is the case independently of the relation between the black and white hole masses, which are thus freely specifiable independent observables. A natural question then arises about the phenomenological implications of the resulting non-singular effective spacetime and whether some specific relation between the masses can be singled out from a phenomenological perspective. Here we focus on the thermodynamic properties of the effective polymer black hole and analyse the corresponding quantum corrections as functions of black and white hole masses. The study of the relevant thermodynamic quantities such as temperature, specific heat and horizon entropy reveals that the effective spacetime generically admits an extremal minimal-sized configuration of quantum-gravitational nature characterised by vanishing temperature and entropy. For large masses, the classically expected results are recovered at leading order and quantum corrections are negligible, thus providing us with a further consistency check of the model. The explicit form of the corrections depends on the specific relation among the masses. In particular, a first-order logarithmic correction to the entropy is obtained for a quadratic mass relation. The latter corresponds to the case of proper finite length effects which turn out to be compatible with a minimal length generalised uncertainty principle associated with an extremal Planck-sized black hole.
description: Published version, 33 pages, 7 figures. References and minor clarifications added
Importance of browsing on shrubs - A importância da pastagem de espécies arbustivas
Creators: name: González-Hernández MP ; Mosquera-Losada MR; Rigueiro-Rodríguez A
Publisher: name: Zenodo
Year: 2019
Subjects: Browsing
extensive livestock production
Atlantic heathlands
heaths
woody legumes
Pastoreio
produção pecuária
charneca
leguminosas lenhosas

description: Tradução da folha informativa do projeto AFINET - As raças europeias de gado bovino locais (por ex. Vianesa, Frieiresa, Cachena, Maronesa, Arouquesa, Limousine, Mirandesa, Jarmelista entre outros em Espanha e Portugal) são reconhecidas pelos seus valores ambientais, sociais, culturais, públicos e económicos, e têm estatuto de proteção geográfica da Comissão Europeia. Nas últimas décadas a sua população tem sofrido um declínio drástico e existe grande interesse na sua recuperação. Estas raças tradicionais são muito rústicas e as suas necessidades nutricionais, frequentemente expressas como necessidade em proteína e energia, são mais fáceis de gerir. Estão adaptadas a pastorear plantas consideradas como tendo valor nutricional "limitado" (Erica spp., tojo e gramíneas duras).
Multi-Robot Patrolling with Sensing Idleness and Data Delay Objectives
Creators: name: Scherer, Jürgen
name: Rinner, Bernhard
Publisher: name: arXiv
Year: 2019
Subjects: subject: Robotics (cs.RO)
subject: FOS: Computer and information sciences

description: Multi-robot patrolling represents a fundamental problem for many monitoring and surveillance applications and has gained significant interest in recent years. In patrolling, mobile robots repeatedly travel through an environment, capture sensor data at certain sensing locations and deliver this data to the base station in a way that maximizes the changes of detection. Robots move on tours, exchange data when they meet with robots on neighboring tours and so eventually deliver data to the base station. In this paper we jointly consider two important optimization criteria of multi-robot patrolling: (i) idleness, i.e. the time between consecutive visits of sensing locations, and (ii) delay, i.e. the time between capturing data at the sensing location and its arrival at the base station. We systematically investigate the effect of the robots' moving directions along their tours and the selection of meeting points for data exchange. We prove that the problem of determining the movement directions and meeting points such that the data delay is minimized is NP-hard. We propose heuristics and provide a simulation study which shows that the cooperative approach can outperform an uncooperative approach where every robot delivers the captured data individually to the base station.
Polarization statistics of extra-solar systems
Creators: name: Tamburini, F.
name: Bianchini, A.
name: Ortolani, S.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We have analysed the optical polarimetric properties of nearby intermediate-late type MS stars and examined in some detail the pecularities displayed by those known to have planets. We find that: i) the polarization degree is not strictly correlated with the presence of planets; ii) there is a lack of high eccentricity planets at high optical linear polarization levels; iii) no clear correlation is seen between metallicity and polarization amongst extra-solar systems; iv) the contribution to the polarization by the interstellar medium seems to become effective only after ~70 pc.
description: 4 pages, 5 postscript figures, 1 table; Accepted for publication in Astronomy and Astrophysics
zhang Hongxia -et-al-2021-circulating-pro-inflammatory-exosomes-worsen-stroke-outcomes-in-aging.pdf
Creators: name: Zhang, Hongxia
name: Jin, Kunlin
Publisher: name: Health Research Alliance
Year: 2024
Subjects: classificationCode: 420301
subject: Aged health care

description: Our data suggest that the levels of proinflammatory mediators in serum exosomes increase with age and are
associated with worsened stroke outcomes through excessive C3aR-dependent microglial phagoptosis. Modulation of this
process may serve as a promising therapy for stroke and other age-related brain disorders.
Epiviz File Server – Query, compute and interactive exploration of data from indexed genomic files
Creators: name: Kancherla, Jayaram
name: Yifan Yang
name: Bravo, Hector Corrada
Publisher: name: F1000 Research Limited
Year: 2019

description: Epiviz file server Python library, is an in-situ data query system on indexed genomic files, not only for visualization but also for transformation. The library provides various modules to perform various tasks - Import, Query, Compute, and Visualization. Using the file server, users will be able to explore data from publicly hosted genomic files. We currently support various genomic file formats with index - BigBed, BigWig, HDF5 and any format that can be indexed using tabix. Once the data files are defined, users can also define summarizations and transformations on these data files using numpy functions. We use dask to manage, distribute and schedule various query and compute requests on files.
Quantized Fermi-arc-mediated transport in Weyl semimetal nanowires
Creators: name: Kaladzhyan, Vardan
name: Bardarson, Jens H.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We study longitudinal transport in Weyl semimetal nanowires, both in the absence and in the presence of a magnetic flux threading the nanowires. We identify two qualitatively different regimes of transport with respect to the chemical potential in the nanowires. In the "surface regime", for low doping, most of the conductance occurs through the Fermi-arc surface states, and it rises in steps of one quantum of conductance as a function of the chemical potential; furthermore, with varying flux the conductance changes in steps of one quantum of conductance with characteristic Fabry-Pérot interference oscillations. In the "bulk-surface regime", for highly-doped samples, the dominant contribution to the conductance is quadratic in the chemical potential, and mostly conditioned by the bulk states; the flux dependence shows clearly that both the surface and the bulk states contribute. The two aforementioned regimes prove that the contribution of the Fermi-arc surface states is salient and, therefore, crucial for understanding transport properties of finite-size Weyl semimetal systems. Last but not least, we demonstrate that both regimes are robust to disorder.
description: 13 pages, 6 figures
Refinement of polygonal grids using Convolutional Neural Networks with applications to polygonal Discontinuous Galerkin and Virtual Element methods
Creators: name: Antonietti, P. F.
name: Manuzzi, E.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Numerical Analysis (math.NA)
subject: Machine Learning (cs.LG)
subject: FOS: Mathematics
subject: FOS: Computer and information sciences

description: We propose new strategies to handle polygonal grids refinement based on Convolutional Neural Networks (CNNs). We show that CNNs can be successfully employed to identify correctly the "shape" of a polygonal element so as to design suitable refinement criteria to be possibly employed within adaptive refinement strategies. We propose two refinement strategies that exploit the use of CNNs to classify elements' shape, at a low computational cost. We test the proposed idea considering two families of finite element methods that support arbitrarily shaped polygonal elements, namely Polygonal Discontinuous Galerkin (PolyDG) methods and Virtual Element Methods (VEMs). We demonstrate that the proposed algorithms can greatly improve the performance of the discretization schemes both in terms of accuracy and quality of the underlying grids. Moreover, since the training phase is performed off-line and is independent of the differential model the overall computational costs are kept low.
Embedded minimal disks: Proper versus nonproper - global versus local
Creators: name: Colding, Tobias H.
name: Minicozzi, William P.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Differential Geometry (math.DG)
subject: Analysis of PDEs (math.AP)
subject: FOS: Mathematics

description: We construct a sequence of embedded minimal disks in a ball where the curvatures blow up only at the center. The sequence converges to a limit which is not smooth and not proper.
description: To appear in Transactions of the AMS; title changed
MOESM2 of Regulation of ABI5 expression by ABF3 during salt stress responses in Arabidopsis thaliana
Creators: name: Chang, Hui-Chun
name: Min-Chieh Tsai
name: Sih-Sian Wu
name: Ing-Feng Chang
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 2. Negative controls for the bimolecular fluorescence complementation analysis.
Bodo cygnus Patterson and Simpson 1996
Creators: name: Lee, Won Je
name: Patterson, David J.
Publisher: name: Zenodo
Year: 2000
Subjects: Biodiversity
Taxonomy
Protozoa
Euglenozoa
Kinetoplastea
Bodonida
Bodonidae
Bodo
Bodo cygnus

description: Bodo cygnus Patterson and Simpson, 1996
(fi gures 1g, 2k, l)
 Description. Cell 8-13 Mm long, elliptical, with subapical indentation from which two unequal fl agella emerge. The anterior fl agellum is as long as the cell and may wrap around the anterior end of the cell during feeding. The acronematic posterior fl agellum is about 2.5 times the length of the cell. Cells have a spiral groove that is easy to overlook and that extends from the subapical indentation to the posterior end of the cell. Cells move by rotating swimming movements. Sometimes commonly observed.
 Remarks. This species was fi rst described from hypersaline marine sites by Patterson and Simpson (1996) and with lengths from 8 to 12 Mm. Our observations are in accord with those of Patterson and Simpson (1996). Bodo cygnus may be confused with B. designis Skuja, 1948 in general appearance, rotational swimming movements and cell length, but it can be distinguished by its spiral groove. The groove is hard to see in swimming cells. Previously reported large B. designis may be referable to B. cygnus because the spiral groove may have been overlooked. Careful observation is needed to distinguish these two species.
description: Published as part of Lee, Won Je & Patterson, David J., 2000, Heterotrophic flagellates (Protista) from marine sediments of Botany Bay, Australia, pp. 483-562 in Journal of Natural History 34 on pages 490-491
Additional file 1: of Oct4 upregulates osteopontin via Egr1 and is associated with poor outcome in human lung cancer
Creators: name: Yin-Hsun Feng
name: Yu-Chu Su
name: Shuo-Fu Lin
name: Pey-Ru Lin
name: Chao-Liang Wu
name: Chao-Ling Tung
name: Chien-Feng Li
name: Gia-Shing Shieh
name: Shiau, Ai-Li
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Molecular Biology
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Science Policy

description: Table S1. The clinico-pathological parameters of 79 lung cancer patients. (DOCX 17 kb)
Chern numbers as half-signature of the spectral localizer
Creators: name: Viesca, Edgar Lozano
name: Schober, Jonas
name: Schulz-Baldes, Hermann
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: Two recent papers proved that complex index pairings can be calculated as the half-signature of a finite dimensional matrix, called the spectral localizer. This paper contains a new proof of this connection for even index pairings based on a spectral flow argument. It also provides a numerical study of the spectral gap and the half-signature of the spectral localizer for a typical two-dimensional disordered topological insulator in the regime of a mobility gap at the Fermi energy. This regime is not covered by the above mathematical results (which suppose a bulk gap), but nevertheless the half-signature of the spectral localizer is a clear indicator of a topological phase.
description: to appear in JMP
A Machine-Learning Approach to Estimating the Referential Properties of Japanese Noun Phrases
Creators: name: Murata, Masaki
name: Uchimoto, Kiyotaka
name: Ma, Qing
name: Isahara, Hitoshi
Publisher: name: arXiv
Year: 2001
Subjects: subject: Computation and Language (cs.CL)
subject: FOS: Computer and information sciences
subject: H.3.3; I.2.7

description: The referential properties of noun phrases in the Japanese language, which has no articles, are useful for article generation in Japanese-English machine translation and for anaphora resolution in Japanese noun phrases. They are generally classified as generic noun phrases, definite noun phrases, and indefinite noun phrases. In the previous work, referential properties were estimated by developing rules that used clue words. If two or more rules were in conflict with each other, the category having the maximum total score given by the rules was selected as the desired category. The score given by each rule was established by hand, so the manpower cost was high. In this work, we automatically adjusted these scores by using a machine-learning method and succeeded in reducing the amount of manpower needed to adjust these scores.
description: 9 pages. Computation and Language. This paper is included in the book entitled by "Computational Linguistics and Intelligent Text Processing, Second International Conference, CICLing 2001, Mexico City, February 2001 Proceedings", Alexander Gelbukh (Ed.), Springer Publisher, ISSN 0302-9743, ISBN 3-540-41687-0
Bodo designis Skuja 1948
Creators: name: Lee, Won Je
name: Patterson, David J.
Publisher: name: Zenodo
Year: 2000
Subjects: Biodiversity
Taxonomy
Protozoa
Euglenozoa
Kinetoplastea
Bodonida
Bodonidae
Bodo
Bodo designis

description: Bodo designis Skuja, 1948
(fi gures 1h, 2m)
 Description. Cell outline usually elliptical, 4-7 Mm long, 2-4 Mm wide. With two unequal fl agella emerging from a subapical pocket. Cells are fl exible. The anterior fl agellum is about the length of the cell or slightly shorter and curves back over the rostrum. The anterior fl agellum wraps around the anterior part of the cell and the mouth is pressed against food particles when the cell is feeding. The acronematic posterior fl agellum is about 2-4 times the length of the cell and has a sinuous pro fi le in swimming cells. Cells rotate around their longitudinal axes when swimming. The nucleus is located near the middle of the cell. Common.
 Remarks. Cell length was previously reported to be from 7 to 15 Mm. This species has been reported from marine sites in Antarctica, North Atlantic, subtropical and tropical Australia, Brazil, Denmark, Fiji, Gulf of Finland, Greenland, Hawaii, and Panama (Larsen and Patterson, 1990; Vørs, 1992a, 1992b, 1993a; Patterson et al., 1993; Ekebom et al., 1996; Patterson and Simpson, 1996; Tong, 1997a; Tong et al., 1997, 1998). Generally, our observations are consistent with those of previous authors. Bodo designis has also been found in several freshwater sites. It appears to be cosmopolitan. Sometimes, this species occurs in large numbers. It has been characterized by the rotating behaviour of swimming cells, but B. cygnus reported by Patterson and Simpson (1996) and B. platyrhynchu s also have a rotating swimming movement. Bodo designis sometimes co-occurs with B. cygnus, but B. cygnus can be distinguished because it has a spiral groove.
description: Published as part of Lee, Won Je & Patterson, David J., 2000, Heterotrophic flagellates (Protista) from marine sediments of Botany Bay, Australia, pp. 483-562 in Journal of Natural History 34 on page 491
From Double Hecke algebra to Fourier transform
Creators: name: Cherednik, Ivan
name: Ostrik, Viktor
Publisher: name: arXiv
Year: 2001
Subjects: subject: Quantum Algebra (math.QA)
subject: Representation Theory (math.RT)
subject: FOS: Mathematics

description: The paper contains a systematic theory of the one-dimensional Double Hecke algebra, including applications to the difference Fourier transform, Macdonald's polynomials, Gaussian sums at roots of unity, and Verlinde algebras. The main result is the classification of finite-dimensional representations for generic q and at roots of unity.
description: Sections 8,9 are updated
Castnia Fabricius 1807
Creators: name: Moraes, Simeão De Souza
name: Duarte, Marcelo
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Castniidae
Castnia

description: CASTNIA FABRICIUS, 1807 (FIG. 4)
 Type species
 Papilio icarus Cramer, [1775]
 Included species
 Castnia invaria Walker, 1854, Castnia juturna Hopffer, 1856, Castnia lecerfi Dalla-Torre, 1913, Castnia estherae Miller, 1976, and Castnia fernandezi González, 1992.
 Castnia eudesmia Gray, 1838 incertae sedis.
 Comments
 The two species included in our analysis represent two morphologically distinct lineages. Castnia eudesmia is more closely related to the species included in Ceretes, sharing with this genus morphological attributes such as the general shape of the uncus and valva, as well as characters of the wing venation. Some characters of C. eudesmia are plesiomorphic, also related to Corybantes Hübner, [1819].
 Castnia invaria has morphological traits similar to Telchin, especially the morphology of the gnathos. For this reason the identity of the genus Castnia needs to be validated through a revisionary study including all the species.
description: Published as part of Moraes, Simeão De Souza & Duarte, Marcelo, 2014, Phylogeny of Neotropical Castniinae (Lepidoptera: Cossoidea: Castniidae): testing the hypothesis of the mimics as a monophyletic group and implications for the arrangement of the genera, pp. 362-399 in Zoological Journal of the Linnean Society 170 (2) on page 391, DOI: 10.1111/zoj.12102, http://zenodo.org/record/5302314
The politics of physicists social models
Creators: name: Jensen, Pablo
Publisher: name: arXiv
Year: 2019
Subjects: subject: Physics and Society (physics.soc-ph)
subject: FOS: Physical sciences

description: I give an overview of the topic of this special issue, the applications of (statistical) physics to social sciences at large. I discuss several examples of simple social models put forward by physicists and discuss their interest. I argue that while they may be conceptually useful to correct our intuitive models of social mechanisms, their relevance for real social systems is moot. What is more, since physicists have always needed to tame the world inside laboratories to make their models relevant, I suggest that social modeling might be linked to human taming, a smashing political project.
description: Submitted to the special issue of the Comptes Rendus Academie des Sciences (CRAS) devoted to the applications of (statistical) physics to social sciences at large, edited by J Ph Bouchaud and JP Nadal : 8 pages, 1 figure
Additional file 1: of Long-lasting alterations in adipose tissue density and adiponectin production in people living with HIV after thymidine analogues exposure
Creators: name: Gelpi, Marco
name: Knudsen, Andreas
name: Larsen, Karoline
name: Mocroft, Amanda
name: Anne-Mette Lebech
name: Lindegaard, Birgitte
name: Lundgren, Jens
name: Kofoed, Klaus
name: Nielsen, Susanne
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Table S1. Linear Regression Model predicting the degree of change (with 95% CI) in HU of VAT and SAT density. (DOCX 14 kb)
Additional file 10: of Quantitative proteomic analysis reveals AK2 as potential biomarker for late normal tissue radiotoxicity
Creators: name: Lacombe, Jérôme
name: Brengues, Muriel
name: Mangé, Alain
name: Bourgier, Céline
name: Gourgou, Sophie
name: Pèlegrin, André
name: Ozsahin, Mahmut
name: Solassol, Jérôme
name: Azria, David
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 60506 Virology

description: Figure S7. mRNA expression by qRT-PCR analysis of NOX family members in all patients (n = 20; n = 7 with and n = 13 without grade ≥ 2 bf+) at 24 h after irradiation (8 Gy). ND not detected (below threshold). (PDF 883 kb)
Thermodynamic optimality of glycolytic oscillations
Creators: name: Kim, Pureun
name: Hyeon, Changbong
Publisher: name: arXiv
Year: 2021
Subjects: subject: Biological Physics (physics.bio-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Temporal order in living matters reflects the self-organizing nature of dynamical processes driven out of thermodynamic equilibrium. Because of functional reason, the period of a biochemical oscillation must be tuned to a specific value with precision; however, according to the thermodynamic uncertainty relation (TUR), the precision of oscillatory period is constrained by the thermodynamic cost of generating it. After reviewing the basics of chemical oscillations using Brusselator as a model system, we study the glycolytic oscillation generated by octameric phosphofructokinase (PFK), which is known to display a period of several minutes. By exploring the phase space of glycolytic oscillations, we find that the glycolytic oscillation under the cellular condition is realized in a cost effective manner. Specifically, over the biologically relevant range of parameter values of glycolysis and octameric PFK, the entropy production from the glycolytic oscillation is minimal when the oscillation period is (5 - 10) minutes. Further, the glycolytic oscillation is found at work near the phase boundary of limit cycles, suggesting that a moderate increase of glucose injection rate leads to the loss of oscillatory dynamics, which is reminiscent of the loss of pulsatile insulin release resulting from elevated blood glucose level.
description: 13 pages, 8 figures
Stability of the cohomology rings of Hilbert schemes of points on surfaces
Creators: name: Li, Wei-Ping
name: Qin, Zhenbo
name: Wang, Weiqiang
Publisher: name: arXiv
Year: 2001
Subjects: subject: Algebraic Geometry (math.AG)
subject: Quantum Algebra (math.QA)
subject: FOS: Mathematics

description: We establish some remarkable properties of the cohomology rings of the Hilbert schemes of n points on a projective surface X, from which one sees to what extent these cohomology rings are (in)dependent of X and n.
description: v. 2, 19 pages, latex, title modified, streamlined first half, to appear in J. reine Angew. Math
Contribution of type Ia supernovae to the chemical enrichment of the ultra-faint dwarf galaxy Bootes I
Creators: name: Pakhomov, Yu. V.
name: Mashonkina, L. I.
name: Sitnova, T. M.
name: Jablonka, P.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: For three stars in the ultra-faint dwarf (UFD) galaxy Bootes I we have determined the atmospheric parameters, performed a new reduction of high-resolution spectra from the Subaru archive, and derived the abundances of eight chemical elements without using the LTE assumption. As a result, among the galaxies of its class Bootes I now has the largest sample of stars (11) with a homogeneous set of atmospheric parameters and chemical abundances, and this makes it the most promising for studying the chemical evolution of UFD galaxies. We show that in the range -3
description: 10 pages, 9 figures, 7 tables
Higher-order topological odd-parity superconductors
Creators: name: Yan, Zhongbo
Publisher: name: arXiv
Year: 2019
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: The topological property of a gapped odd-parity superconductor is jointly determined by its pairing nodes and Fermi surfaces in normal state. We reveal that the contractibility of Fermi surfaces without crossing any time-reversal invariant momentum and the presence of nontrivial Berry phase on Fermi surfaces are two key conditions for the realization of higher-order topological odd-parity superconductors (HOTOPSCs). When the normal state is a normal metal, we reveal the necessity of removable Dirac pairing nodes and provide a general and simple principle to realize HOTOPSCs. Our findings can not only be applied to analyze the topological property of odd-parity superconductors, but also be used as a guiding principle to design new platforms of higher-order topological superconductors, as well as higher-order topological insulators owing to their direct analogy in Hamiltonian description.
description: 7 pages, 3 figures
Ceretes Schaufuss 1870
Creators: name: Moraes, Simeão De Souza
name: Duarte, Marcelo
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Castniidae
Ceretes

description: CERETES SCHAUFUSS, 1870 (FIG. 1)
 Type species
 Papilio thais Drury, 1782
 Included species
 Ceretes thais (Drury, 1782) and Ceretes marcelserres (Godart, [1824]).
 Comments
The species included in this genus are the only Neotropical species to show extensive sexual dimor- phism in the wing and colour pattern (12: 0). Also the cornuti, consisting of spines covering the entire vesica (40: 0), is another synapomorphic character. This genus shares some plesiomorphic attributes with the Australian species, particularly the curvature of the aedeagus.
description: Published as part of Moraes, Simeão De Souza & Duarte, Marcelo, 2014, Phylogeny of Neotropical Castniinae (Lepidoptera: Cossoidea: Castniidae): testing the hypothesis of the mimics as a monophyletic group and implications for the arrangement of the genera, pp. 362-399 in Zoological Journal of the Linnean Society 170 (2) on page 391, DOI: 10.1111/zoj.12102, http://zenodo.org/record/5302314
Meaning Sort - Three examples: dictionary construction, tagged corpus construction, and information presentation system
Creators: name: Murata, Masaki
name: Kanzaki, Kyoko
name: Uchimoto, Kiyotaka
name: Ma, Qing
name: Isahara, Hitoshi
Publisher: name: arXiv
Year: 2001
Subjects: subject: Computation and Language (cs.CL)
subject: FOS: Computer and information sciences
subject: H.3.3; I.2.7

description: It is often useful to sort words into an order that reflects relations among their meanings as obtained by using a thesaurus. In this paper, we introduce a method of arranging words semantically by using several types of `{\sf is-a}' thesauri and a multi-dimensional thesaurus. We also describe three major applications where a meaning sort is useful and show the effectiveness of a meaning sort. Since there is no doubt that a word list in meaning-order is easier to use than a word list in some random order, a meaning sort, which can easily produce a word list in meaning-order, must be useful and effective.
description: 14 pages. Computation and Language. This paper is included in the book entitled by "Computational Linguistics and Intelligent Text Processing, Second International Conference", Springer Publisher
Recurrent Nova IM Normae
Creators: name: Kato, T.
name: Yamaoka, H.
name: Liller, W.
name: Monard, B.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We detected the second historical outburst of the 1920 nova IM Nor. Accurate astrometry of the outbursting object revealed the true quiescent counterpart having a magnitude of R=17.0 mag and B=18.0 mag. We show that the quiescent counterpart shows a noticeable variation. From the comparison of light curves and spectroscopic signatures, we propose that IM Nor and CI Aql comprise a new class of recurrent novae bearing some characteristics similar to those of classical novae. We interpret that the noticeable quiescent variation can be a result of either high orbital inclination, which may be also responsible for the low quiescent brightness, or the presence of high/low states. If the second possibility is confirmed by future observations, IM Nor becomes the first recurrent nova showing state changes in quiescence. Such state changes may provide a missing link between recurrent novae and supersoft X-ray sources.
description: 4 pages, 3 figures, submitted to Astronomy and Astrophysics Letters
MOESM1 of Regulation of ABI5 expression by ABF3 during salt stress responses in Arabidopsis thaliana
Creators: name: Chang, Hui-Chun
name: Min-Chieh Tsai
name: Sih-Sian Wu
name: Ing-Feng Chang
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Additional file 1. Isolation of the abf3 mutant line.
Rhynchomonas nasuta Klebs 1893
Creators: name: Lee, Won Je
name: Patterson, David J.
Publisher: name: Zenodo
Year: 2000
Subjects: Biodiversity
Taxonomy
Protozoa
Euglenozoa
Kinetoplastea
Bodonida
Bodonidae
Rhynchomonas
Rhynchomonas nasuta

description: Rhynchomonas nasuta Klebs, 1893
(fi gures 1l, 2r)
 Description. Gliding cells with a bulbous motile snout. Cell 3.5-6 Mm long, 2.5-4 Mm wide, fl attened, fl exible. The snout, which contains a mouth, beats slowly. The anterior fl agellum lies alongside the snout and is hard to see, and the trailing fl agellum is about 2-2.7 times the cell length, and is acronematic. Cells consume attached bacteria. Commonly observed.
 Remarks. The length of R. nasuta has previously been reported to be from 3 to 11 Mm. This species has been found in marine sites in Antarctica, North Atlantic, subtropical and tropical Australia, Brazil, Canada, Denmark, Fiji, Gulf of Finland, Greenland, Hawaii, Norway and Equatorial Paci fi c (Griessmann, 1913; Throndsen, 1969, 1970; Burzell, 1973; Larsen and Patterson, 1990; Vørs, 1992a, 1992b, 1993a; Patterson et al., 1993; Vørs et al., 1995; Ekebom et al., 1996; Patterson and Simpson, 1996; Tong et al., 1997, 1998; Bernard et al., 1999). Rhynchomona s nasuta is common and widespread, but usually does not occur in large numbers. Our observations are in good agreement with those of Larsen and Patterson (1990). This species can be distinguished from small species of Amastigomonas by the bulbous snout.
description: Published as part of Lee, Won Je & Patterson, David J., 2000, Heterotrophic flagellates (Protista) from marine sediments of Botany Bay, Australia, pp. 483-562 in Journal of Natural History 34 on page 493