cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Effective holographic theories of momentum relaxation and violation of conductivity bound
Creators: name: Goutéraux, Blaise
name: Kiritsis, Elias
name: Li, Wei-Jia
Publisher: name: arXiv
Year: 2016
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We generalize current holographic models with homogeneous breaking of translation symmetry by incorporating higher derivative couplings, in the spirit of effective field theories. Focusing on charge transport, we specialize to two simple couplings between the charge and translation symmetry breaking sectors. We obtain analytical charged black brane solutions and compute their DC conductivity in terms of horizon data. We constrain the allowed values of the couplings and note that the DC conductivity can vanish at zero temperature for strong translation symmetry breaking, thus showing that in general there is no lower bound on the conductivity.
description: v3: Minor edits to match published version. v2: Typos corrected. Discussion and plots updated in section 4.2. Main conclusions unchanged. v1: 26 pages, 7 figures
Additional file 1 of Low mitochondrial DNA copy number induces chemotherapy resistance via epithelial-mesenchymal transition by DNA methylation in esophageal squamous cancer cells
Creators: name: Kubo, Yuto
name: Tanaka, Koji
name: Masuike, Yasunori
name: Takahashi, Tsuyoshi
name: Yamashita, Kotaro
name: Makino, Tomoki
name: Saito, Takuro
name: Yamamoto, Kazuyoshi
name: Tsujimoto, Tomoyuki
name: Harino, Takashi
name: Kurokawa, Yukinori
name: Yamasaki, Makoto
name: Nakajima, Kiyokazu
name: Eguchi, Hidetoshi
name: Doki, Yuichiro
Publisher: name: figshare
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Hematology

description: Additional file 1: Figure S1. The association between TFAM knockdown and mtDNA copy number. A TFAM protein expression was lower in tfam-sh than control-sh TE8 cells. tfam-sh1 and tfam-sh2 TE8 cells had an approximately 60% decrease in mtDNA copy number compared with control-sh TE8 cells. B: tfam-sh cells had lower protein expression levels of TFAM than control-sh cells. The mtDNA copy number in tfam-sh1 and tfam-sh2 TE11 cells was approximately 40% lower than that in control-sh TE11 cells. C: The proliferation rates of tfam-sh1 and tfam-sh2 cells were significantly lower than that of control-sh cells.
On the chiral separation effect in a slab
Creators: name: Sitenko, Yu. A.
Publisher: name: arXiv
Year: 2016
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We study the influence of boundaries on chiral effects in hot dense relativistic spinor matter in a strong magnetic field which is transverse to bounding planes. The most general set of boundary conditions ensuring the confinement of matter within the bounding planes is considered. We find that, in thermal equilibrium, the nondissipative axial current along the magnetic field is induced, depending on chemical potential and temperature, as well as on a choice of boundary conditions. As temperature increases from zero to large values, a stepwise behaviour of the axial current density as a function of chemical potential is changed to a smooth one; the choice of a boundary condition can facilitate either amplification or diminution of the chiral separation effect. This points at a significant role of boundaries for physical systems with hot dense magnetized relativistic spinor matter, e.g., compact stars, heavy-ion collisions, novel materials known as Dirac and Weyl semimetals.
description: 9 pages, minor changes, some discussion added in the concluding section, misprints corrected
Additional file 2 of Effect of bovine milk fat-based infant formulae on microbiota, metabolites and stool parameters in healthy term infants in a randomized, crossover, placebo-controlled trial
Creators: name: Looijesteijn, Ellen
name: Brouwer, Rutger W. W.
name: Schoemaker, Ruud J. W.
name: Ulfman, Laurien H.
name: Ham, Stephanie L.
name: Jeurink, Prescilla
name: Karaglani, Eva
name: van IJcken, Wilfred F. J.
name: Manios, Yannis
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Physiology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Computational Biology

description: Additional file 2. Supplementary tables and figures
Open Science as transversal axis of the research management in MLIC universities
Creators: name: Pino-Chacón, Gabriela
Publisher: name: Zenodo
Year: 2023
Subjects: Open Access, Open Research Data, Open Science

description: One of the main problems for the higher education institution in the promotion of the practice of Open Science (OS) is the limitations of resources to cover all the areas of OS. This lightning talk main motivation is to share the experience of Universidad Nacional, Costa Rica presenting how the Vice-rectory for Research assume this challenge integrating the Institutional Open Science Strategy as a transversal axis of the Research System. The first step was to assess the maturity of the Institution to start the path of Open Science. A strategy of OS was designed prioritizing seven areas, namely: Open Access, Open Research Data, OS technological tools, OS Evaluation, Open Innovation, Citizen Science, OS declarations and guidelines. Then the issue of incorporating this strategy to the Research System was addressed. This System is part of the Quality Management System of the University, and its design includes six processes. Initially, it was thought of incorporating the open science promotion as one of the subprocesses of the System but during it construction we realized that the implementation of open science is not the prerogative of a process, and that the OS Strategy is wider than a subprocess. The decision was made to consider the management and promotion of OS an axis of dynamization of the System. This implied the capacity building in the academic team that works in the Vice-rectory and the dialogue with other important actors involved in the research area of the Institution. Presently, the implementation of the Open Science Strategy is present in the actions and responsibilities of each of the System processes. We believe that sharing this experience can support institutions with few resources to trace an implementation path of open science practice.
Additional file 2 of Low mitochondrial DNA copy number induces chemotherapy resistance via epithelial-mesenchymal transition by DNA methylation in esophageal squamous cancer cells
Creators: name: Kubo, Yuto
name: Tanaka, Koji
name: Masuike, Yasunori
name: Takahashi, Tsuyoshi
name: Yamashita, Kotaro
name: Makino, Tomoki
name: Saito, Takuro
name: Yamamoto, Kazuyoshi
name: Tsujimoto, Tomoyuki
name: Harino, Takashi
name: Kurokawa, Yukinori
name: Yamasaki, Makoto
name: Nakajima, Kiyokazu
name: Eguchi, Hidetoshi
name: Doki, Yuichiro
Publisher: name: figshare
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Hematology

description: Additional file 2: Figure S2. Mitochondrial membrane potential and epithelial–mesenchymal transition. A The complex I and IV mRNA expression levels was lower in mtDNA-depleted ESCC and was higher in mtDNA-increased ESCC. B The ESCC cells had no difference in mtDNA copy number under 40 μM CCCP exposure. C 30 µM CCCP induced to most decrease in mitochondrial membrane potential. D TE8 under 30 µM CCCP exposure showed spindle cell transformation, depending on exposure time (day1-5). Scale bars, 20 µM. E The relative mRNA expression level of E-cadherin in ESCC cells which cultured with CCCP was significantly decreased at day5 compared with control cells in TE8. The relative mRNA expression level of N-cadherin, vimentin, and zeb-1 in its cells was significantly increased compared with control cells.
Subdimensional Particle Structure of Higher Rank U(1) Spin Liquids
Creators: name: Pretko, Michael
Publisher: name: arXiv
Year: 2016
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Spin liquids are conventionally described by gauge theories with a vector gauge field. However, there exists a wider class of spin liquids with higher rank tensors as the gauge variable. In this work, we focus on (3+1)-dimensional spin liquids described by U(1) symmetric tensor gauge theories, which have recently been shown to be stable gapless spin liquids. We investigate the particle structure of these tensor gauge theories and find that they have deep connections with the "fracton" models recently discovered by Vijay, Haah, and Fu. Tensor gauge theories have more conservation laws than the simple charge conservation law of rank 1 theories. These conservation laws place severe restrictions on the motion of particles. Particles in some models are fully immobile (fractons), while other models have particles restricted to motion along lower-dimensional subspaces.
description: 11+2 pages
Dark-ages reionization & galaxy formation simulation V: morphology and statistical signatures of reionization
Creators: name: Geil, Paul M.
name: Mutch, Simon J.
name: Poole, Gregory B.
name: Angel, Paul W.
name: Duffy, Alan R.
name: Mesinger, Andrei
name: Wyithe, J. Stuart B.
Publisher: name: arXiv
Year: 2015
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We use the Dark-ages, Reionization And Galaxy-formation Observables from Numerical Simulations (DRAGONS) framework to investigate the effect of galaxy-formation physics on the morphology and statistics of ionized hydrogen (HII) regions during the Epoch of Reioinization (EoR). DRAGONS self-consistently couples a semi-analytic galaxy-formation model with the inhomogeneous ionizing UV background, and can therefore be used to study the dependence of morphology and statistics of reionization on feedback phenomena of the ionizing source galaxy population. Changes in galaxy-formation physics modify the sizes of HII regions and the amplitude and shape of 21-cm power spectra. Of the galaxy physics investigated, we find that supernova feedback plays the most important role in reionization, with HII regions up to $\approx 20$ per cent smaller and a fractional difference in the amplitude of power spectra of up to $\approx 17$ per cent at fixed ionized fraction in the absence of this feedback. We compare our galaxy-formation-based reionization models with past calculations that assume constant stellar-to-halo mass ratios and find that with the correct choice of minimum halo mass, such models can mimic the predicted reionization morphology. Reionization morphology at fixed neutral fraction is therefore not uniquely determined by the details of galaxy formation, but is sensitive to the mass of the haloes hosting the bulk of the ionizing sources. Simple EoR parametrizations are therefore accurate predictors of reionization statistics. However, a complete understanding of reionization using future 21-cm observations will require interpretation with realistic galaxy-formation models, in combination with other observations.
description: 14 pages, 12 figures, published in MNRAS
Additional file 3 of Effect of bovine milk fat-based infant formulae on microbiota, metabolites and stool parameters in healthy term infants in a randomized, crossover, placebo-controlled trial
Creators: name: Looijesteijn, Ellen
name: Brouwer, Rutger W. W.
name: Schoemaker, Ruud J. W.
name: Ulfman, Laurien H.
name: Ham, Stephanie L.
name: Jeurink, Prescilla
name: Karaglani, Eva
name: van IJcken, Wilfred F. J.
name: Manios, Yannis
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Physiology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Computational Biology

description: Additional file 3. Heatmap normalized pathway analysis
Bericht an den hohen Regierungsrath betreffend die Umgestaltung der Statistik der Zürcherischen Rechtspflege
Creators: name: Treichler, Johann Jakob
Publisher: name: Orell, Füssli und Co.
Year: 1869
Subjects: subject: 314 Allgemeine Statistiken zu Europa
subject: 340 Recht
subject: Kanton Zürich
subject: Amtliche Statistik
subject: Rechtspflege

description: Inhalt: Einleitung (Historischer Rückblick) ; Allgemeine Grundsätze der Statistik der Rechtspflege (Zweck ; Mittel ; Umfang) ; Die Zivilrechtspflege ; Auffälle ; Schuldbetreibung ; Hypothekarwesen ; Strafrechtspflege
Band Gap Engineering of Two-Dimensional Nitrogene
Creators: name: Li, Jie-Sen
name: Wang, Wei-Liang
name: Yao, Dao-Xin
Publisher: name: arXiv
Year: 2016
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: In our previous study, we have predicted the novel two-dimensional honeycomb monolayers of pnictogen. In particular, the structure and properties of the honeycomb monolayer of nitrogen, which we call nitrogene, are very unusual. In this paper, we make an in-depth investigation of its electronic structure. We find that the band structure of nitrogene can be engineered in several ways: controlling the stacking of monolayers, application of biaxial tensile strain, and application of perpendicular electric field. The band gap of nitrogene is found to decrease with the increasing number of layers. The perpendicular electric field can also reduce the band gap when it is larger than 0.18V/ Å, and the gap closes at 0.35V/ Å. A nearly linear dependence of the gap on the electric field is found during the process. Application of biaxial strain can decrease the band gap as well, and eventually closes the gap. After the gap-closing, we find six inequivalent Dirac points in the Brillouin zone under the strain between 17% and 28%, and the nitrogene monolayer becomes a Dirac semimetal. These findings suggest that the electronic structure of nitrogene can be modified by several techniques, which makes it a promising candidate for electronic devices.
description: 19 pages, 10 figures
General scaling relations for locomotion in granular media
Creators: name: Slonaker, James
name: Motley, D. Carrington
name: Zhang, Qiong
name: Townsend, Stephen
name: Senatore, Carmine
name: Iagnemma, Karl
name: Kamrin, Ken
Publisher: name: arXiv
Year: 2016
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We derive a general dimensionless form for granular locomotion, which is validated in experiments and Discrete Element Method (DEM) simulations. The form instructs how to scale size, mass, and driving parameters in order to relate dynamic behaviors of different locomotors in the same granular media. The scaling can be derived by assuming intrusion forces arise from Resistive Force Theory (RFT) or equivalently by assuming the granular material behaves as a continuum obeying a frictional yield criterion. The scalings are experimentally confirmed using pairs of wheels of various shapes and sizes under many driving conditions in a common sand bed. We discuss why the two models provide such a robust set of scaling laws even though they neglect a number of the complexities of granular rheology. Motivated by potential extra-planetary applications, the dimensionless form also implies a way to predict wheel performance in one ambient gravity based on tests in a different ambient gravity. We confirm this using DEM simulations, which show that scaling relations are satisfied over an array of driving modes even when gravity differs between scaled tests.
Additional file 3 of Low mitochondrial DNA copy number induces chemotherapy resistance via epithelial-mesenchymal transition by DNA methylation in esophageal squamous cancer cells
Creators: name: Kubo, Yuto
name: Tanaka, Koji
name: Masuike, Yasunori
name: Takahashi, Tsuyoshi
name: Yamashita, Kotaro
name: Makino, Tomoki
name: Saito, Takuro
name: Yamamoto, Kazuyoshi
name: Tsujimoto, Tomoyuki
name: Harino, Takashi
name: Kurokawa, Yukinori
name: Yamasaki, Makoto
name: Nakajima, Kiyokazu
name: Eguchi, Hidetoshi
name: Doki, Yuichiro
Publisher: name: figshare
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Hematology

description: Additional file 3: Figure S3. Relationship of mtDNA and DNA methylation. A The mtDNA-depleted of TE8 cells had appropriately double higher the mRNA expression level of DNMT-1, DNMT-3A and DNMT-3B than control cell lines. B A mtDNA-depleted of TE8 cells had higher protein expression levels of DNMT-1 and DNMT-3A compared with control cells. C The control cell morphology with DNMT inhibitor remained nonspindle and unchanged. Scale bars, 20 µM. D The DNMT1 protein level in control cells and mtDNA-depleted cells were lower expression by DNMT1 knockdown, and DNMT3A and 3B protein levels had little change in DNMT1 knockdown cell. Also, the protein level of E-cadherin was higher in mtDNA-depleted cells of DNMT1 knockdown. The N-cadherin and vimentin protein levels by DNMT1 knockdown had lower expression in mtDNA-depleted ESCC cells.
Making the museum visible
Creators: name: Fernández, Isabel García
name: Jiménez, Sonia Díaz
name: García, Gabriel Martínez
Publisher: name: International Committee for University Museums and Collections (UMAC)
Year: 2012
Subjects: subject: veterinary museum
subject: visible storage
subject: heritage assessment
subject: 060 Organisationen, Museumswissenschaft

description: The Veterinary Museum, Complutense University, Madrid, is an interesting example of institutional adaptation. From its establishment, it has had to reinvent itself in response to political, social, economic and academic circumstances. It was created at the end of the eighteenth century to house teaching and research collections that were much appreciated at that time. However, the museum history is full of losses and recoveries. Rebirth in the twenty-first century; a new plan was developed taking into account the academic environment and seeking public recognition. The Animal Hospital belonging to the veterinary faculty was chosen for its museographic installations so its contents are very accessible to the public.
Magnon Dirac materials
Creators: name: Fransson, J.
name: Black-Schaffer, A. M.
name: Balatsky, A. V.
Publisher: name: arXiv
Year: 2015
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Other Condensed Matter (cond-mat.other)
subject: FOS: Physical sciences

description: We demonstrate how a Dirac-like magnon spectrum is generated for localized magnetic moments forming a two-dimensional honeycomb lattice. The Dirac crossing point is proven to be robust against magnon-magnon interactions, as these only shift the spectrum. Local defects induce impurity resonances near the Dirac point, as well as magnon Friedel oscillations. The energy of the Dirac point is controlled by the exchange coupling, and thus a two-dimensional array of magnetic dots is an experimentally feasible realization of Dirac magnons with tunable dispersion.
description: 6 pages, 2 figures - article as published
Data Constrained Coronal Mass Ejections in A Global Magnetohydrodynamics Model
Creators: name: Jin, M.
name: Manchester, W. B.
name: van der Holst, B.
name: Sokolov, I.
name: Toth, G.
name: Mullinix, R. E.
name: Taktakishvili, A.
name: Chulaki, A.
name: Gombosi, T. I.
Publisher: name: arXiv
Year: 2016
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We present a first-principles-based coronal mass ejection (CME) model suitable for both scientific and operational purposes by combining a global magnetohydrodynamics (MHD) solar wind model with a flux rope-driven CME model. Realistic CME events are simulated self-consistently with high fidelity and forecasting capability by constraining initial flux rope parameters with observational data from GONG, SOHO/LASCO, and STEREO/COR. We automate this process so that minimum manual intervention is required in specifying the CME initial state. With the newly developed data-driven Eruptive Event Generator Gibson-Low (EEGGL), we present a method to derive Gibson-Low (GL) flux rope parameters through a handful of observational quantities so that the modeled CMEs can propagate with the desired CME speeds near the Sun. A test result with CMEs launched with different Carrington rotation magnetograms are shown. Our study shows a promising result for using the first-principles-based MHD global model as a forecasting tool, which is capable of predicting the CME direction of propagation, arrival time, and ICME magnetic field at 1 AU (see companion paper by Jin et al. 2016b).
description: 30 pages, 7 figures, 3 tables, accepted by ApJ
What is the effect of emotional engagement and bullying on achievement gap: Multilevel analysis
Creators: name: Raižienė, Saulė
name: Sevalneva, Daiva
name: Erentaitė, Rasa
Publisher: name: Zenodo
Year: 2023

description: Oral presentation at the 15th annual International Conference of Education, Research and Innovation, November 7-9, 2022, Seville, Spain.
Complex superconductivity in the noncentrosymmetric compound Re$_{6}$Zr
Creators: name: Khan, Mojammel A.
name: Karki, A. B.
name: Samanta, T.
name: Browne, D.
name: Stadler, S.
name: Vekhter, I.
name: Adams, P. W.
name: Pandey, Abhishek
name: Prozorov, R.
name: Teknowijoyo, S.
name: Cho, K.
name: Graf, D. E.
name: Young, D. P.
Publisher: name: arXiv
Year: 2016
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We report the electronic structure, synthesis, and measurements of the magnetic, transport, and thermal properties of the polycrystalline noncentrosymmetric compound Re$_{6}$Zr. We observed a bulk superconducting transition at temperature $T_{c}$ $\sim$ 6.7 K, and measured the resistivity, heat capacity, thermal conductivity, and the London penetration depth below the transition, as well as performed doping and pressure studies. From these measurements we extracted the critical field, and the superconducting parameters of Re$_{6}$Zr. Our measurements indicate a relatively weak to moderate contribution from a triplet component to the order parameter, and favor a full superconducting gap, although we cannot exclude the existence of point nodes based on our data.
Additional file 4 of Low mitochondrial DNA copy number induces chemotherapy resistance via epithelial-mesenchymal transition by DNA methylation in esophageal squamous cancer cells
Creators: name: Kubo, Yuto
name: Tanaka, Koji
name: Masuike, Yasunori
name: Takahashi, Tsuyoshi
name: Yamashita, Kotaro
name: Makino, Tomoki
name: Saito, Takuro
name: Yamamoto, Kazuyoshi
name: Tsujimoto, Tomoyuki
name: Harino, Takashi
name: Kurokawa, Yukinori
name: Yamasaki, Makoto
name: Nakajima, Kiyokazu
name: Eguchi, Hidetoshi
name: Doki, Yuichiro
Publisher: name: figshare
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Hematology

description: Additional file 4: Figure S4. The change in mtDNA copy number after NAC. A The mtDNA copy number of the ESCC patients after NAC was about 40% lower than this patients before NAC.
Quantum quenches in the sinh-Gordon model: steady state and one point correlation functions
Creators: name: Bertini, Bruno
name: Piroli, Lorenzo
name: Calabrese, Pasquale
Publisher: name: arXiv
Year: 2016
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We consider quantum quenches to the sinh-Gordon integrable quantum field theory from a particular class of initial states. Our analysis includes the case of mass and interaction quenches starting from a non-interacting theory. By means of the recently developed quench action method, we fully characterize the stationary state reached at long times after the quench in terms of the corresponding rapidity distribution. We also provide exact results for the expectation values of arbitrary vertex operators in the post-quench stationary state by proposing a formula based on the analogy with the standard thermodynamic Bethe ansatz. Finally, we comment on the behavior of the post-quench stationary state under the mapping between the sinh-Gordon field theory and the one-dimensional Lieb-Liniger model.
description: 21 pages, 4 figures; v2: minor revision
Bypassing the energy-time uncertainty in time-resolved photoemission
Creators: name: Randi, Francesco
name: Fausti, Daniele
name: Eckstein, Martin
Publisher: name: arXiv
Year: 2016
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: The energy-time uncertainty is an intrinsic limit for time-resolved experiments imposing a tradeoff between the duration of the light pulses used in experiments and their frequency content. In standard time-resolved photoemission, this limitation maps directly onto a tradeoff between the time resolution of the experiment and the energy resolution that can be achieved on the electronic spectral function. Here we propose a protocol to disentangle the energy and time resolutions in photoemission. We demonstrate that dynamical information on all time scales can be retrieved from time-resolved photoemission experiments using suitably shaped light pulses of quantum or classical nature. As a paradigmatic example, we study the dynamical buildup of the Kondo peak, a narrow feature in the electronic response function arising from the screening of a magnetic impurity by the conduction electrons. After a quench, the electronic screening builds up on timescales shorter than the inverse width of the Kondo peak and we demonstrate that the proposed experimental scheme could be used to measure the intrinsic time scales of such electronic screening. The proposed approach provides an experimental framework to access the nonequilibrium response of collective electronic properties beyond the spectral uncertainty limit and will enable the direct measurement of phenomena such as excited Higgs modes and, possibly, the retarded interactions in superconducting systems.
description: Extended introduction, added references to section IIB, improved wording in section IIC
Additional file 5 of Low mitochondrial DNA copy number induces chemotherapy resistance via epithelial-mesenchymal transition by DNA methylation in esophageal squamous cancer cells
Creators: name: Kubo, Yuto
name: Tanaka, Koji
name: Masuike, Yasunori
name: Takahashi, Tsuyoshi
name: Yamashita, Kotaro
name: Makino, Tomoki
name: Saito, Takuro
name: Yamamoto, Kazuyoshi
name: Tsujimoto, Tomoyuki
name: Harino, Takashi
name: Kurokawa, Yukinori
name: Yamasaki, Makoto
name: Nakajima, Kiyokazu
name: Eguchi, Hidetoshi
name: Doki, Yuichiro
Publisher: name: figshare
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Hematology

description: Additional file 5: Table S1. Primer used in this study.
D-meson production in p-Pb collisions at $\sqrt{s_{\rm NN}}=5.02$ TeV and in pp collisions at $\sqrt{s}=7$ TeV
Creators: name: ALICE Collaboration
Publisher: name: arXiv
Year: 2016
Subjects: subject: Nuclear Experiment (nucl-ex)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: The production cross sections of the prompt charmed mesons D$^0$, D$^+$, D$^{*+}$ and D$_s$ were measured at mid-rapidity in p-Pb collisions at a centre-of-mass energy per nucleon pair $\sqrt{s_{\rm NN}}=5.02$ TeV with the ALICE detector at the LHC. D mesons were reconstructed from their decays D$^0\rightarrow{\rm K}^-π^+$, D$^+\rightarrow{\rm K}^-π^+π^+$, D$^{*+}\rightarrow D^0π^+$, D$_s^+\rightarrowϕπ^+\rightarrow{\rm K}^-{\rm K}^+π^+$, and their charge conjugates. The $p_{\rm T}$-differential production cross sections were measured at mid-rapidity in the interval $1
description: 43 pages, 17 captioned figures, 3 tables, authors from page 37, published version, figures at http://aliceinfo.cern.ch/ArtSubmission/node/2711
Estimating the probability of coexistence in cross-feeding communities
Creators: name: Vessman, Björn
name: Gerlee, Philip
name: Lundh, Torbjörn
Publisher: name: arXiv
Year: 2015
Subjects: subject: Populations and Evolution (q-bio.PE)
subject: FOS: Biological sciences

description: The dynamics of many microbial ecosystems are driven by cross-feeding interactions, in which metabolites excreted by some species are metabolised further by others. The population dynamics of such ecosystems are governed by frequency-dependent selection, which allows for stable coexistence of two or more species. We have analysed a model of cross-feeding based on the replicator equation, with the aim of establishing criteria for coexistence in ecosystems containing three species, given the information of the three species' ability to coexist in their three separate pairs, i.e. the long term dynamics in the three two-species component systems. The triple-system is studied statistically and the probability of coexistence in the species triplet is computed for two models of species interactions. The interaction parameters are modelled either as stochastically independent or organised in a hierarchy where any derived metabolite carries less energy than previous nutrients in the metabolic chain. We differentiate between different modes of coexistence with respect to the pair-wise dynamics of the species, and find that the probability of coexistence is close to $\frac12$ for triplet systems with three pair-wise coexistent pairs and for so-called intransitive systems. Systems with two and one pair-wise coexistent pairs are more likely to exist for random interaction parameters, but are on the other hand much less likely to exhibit triplet coexistence. Hence we conclude that certain species triplets are, from a statistical point of view, rare, but if allowed to interact are likely to coexist. This knowledge might be helpful when constructing synthetic microbial communities for industrial purposes.
On the exponent of the automorphism group of a compact Riemann surface
Creators: name: Schweizer, Andreas
Publisher: name: arXiv
Year: 2016
Subjects: subject: Complex Variables (math.CV)
subject: Algebraic Geometry (math.AG)
subject: Group Theory (math.GR)
subject: FOS: Mathematics
subject: primary 14H37, 30F10, secondary 20E34

description: Let $X$ be a compact Riemann surface of genus $g\geq 2$, and let $Aut(X)$ be its group of automorphims. We show that the exponent of $Aut(X)$ is bounded by $42(g-1)$. We also determine explicitly the infinitely many values of $g$ for which this bound is reached and the corresponding groups. Finally we discuss related questions for subgroups $G$ of $Aut(X)$ that are subject to additional conditions, for example being solvable.
description: final version, 13 pages, several improvements thanks to the referee
Additional file 1 of Haematological profile of malaria patients with G6PD and PKLR variants (erythrocytic enzymopathies): a cross-sectional study in Thailand
Creators: name: Mungkalasut, Punchalee
name: Kiatamornrak, Patcharakorn
name: Jugnam-Ang, Watcharapong
name: Krudsood, Srivicha
name: Cheepsunthorn, Poonlarp
name: Cheepsunthorn, Chalisa Louicharoen
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 1: Table S1. Mean and standard deviation (SD) for clinical parameters of malaria patients without thalassaemia and haemoglobinopathies (p-values were determined using the Student’s t-test.)
Turbulent Cosmic-Ray Reacceleration and the Curved Radio Spectrum of the Radio Relic in the Sausage Cluster
Creators: name: Fujita, Yutaka
name: Akamatsu, Hiroki
name: Kimura, Shigeo S.
Publisher: name: arXiv
Year: 2016
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: It has often been thought that the northern radio relic in the galaxy cluster CIZA J2242.8+5301 (the "Sausage" Cluster) is associated with cosmic ray (CR) electrons that are accelerated at a shock through the diffusive shock acceleration (DSA) mechanism. However, recent radio observations have shown that the radio spectrum is curved, which is inconsistent with the prediction of a simple DSA model. Moreover, the CR electron spectrum before being affected by radiative cooling seems to be too hard for DSA. In this study, we show that these facts are natural consequences if the electrons are reaccelerated in turbulence downstream of the shock. In this model, DSA is not the main mechanism for generating high-energy electrons. We find that the mean free path of the electrons should be much shorter than the Coulomb mean free path for efficient reacceleration. The scale of the turbulent eddies must be smaller than the width of the relic. We also predict hard X-ray spectra of inverse Compton scattering of photons.
description: Replaced with published version
title: Erhebungsmaterialien im Projekt Demokratieakzeptanz und Partizipation von Geflüchteten (DePaGe)
Creators: name: Haug, Sonja
name: Schmidbauer, Simon
name: Ostbayerische Technische Hochschule Regensburg / Institut Für Sozialforschung Und Technikfolgenabschätzung
Publisher: name: Ostbayerische Technische Hochschule Regensburg
Year: 2024

description: Erhebungsmaterialien (Fragebogen und Informationstext) des Forschungsprojekts Demokratieakzeptanz und Partizipation von Geflüchteten (DePaGe) im Rahmen des bayerischen Forschungsverbunds zur Zukunft der Demokratie (ForDemocracy).
Additional file 1 of Multiple genome alignment in the telomere-to-telomere assembly era
Creators: name: Kille, Bryce
name: Balaji, Advait
name: Sedlazeck, Fritz J.
name: Nute, Michael
name: Treangen, Todd J.
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1 Review history.
Meridional circulation in the Sun and stars
Creators: name: Kitchatinov, L. L.
Publisher: name: arXiv
Year: 2016
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Mean-field hydrodynamics advanced to clear explanations for the origin and properties of the global meridional flow in stellar convection zones. Qualitative arguments and analysis of basic equations both show that the meridional circulation is driven by non-conservative centrifugal and buoyancy forces and results from a slight disbalance between these two drivers. The deviations from the thermal wind balance are relatively large near the boundaries of convection zones. Accordingly, the meridional flow attains its largest velocities in the boundary layers and decreases inside the convection zone. This picture, however, is neither supported nor dismissed by the conflicting results of recent helioseismic soundings or 3D numerical experiments. The relevant physics of the differential temperature and its possible relation to the solar oblateness are briefly discussed.
description: 7 two-column pages, 4 figures, to appear as a review in Geomagnetism & Aeronomy
Extension of Matrix Pencil Reduction to Abelian Categories
Creators: name: Verdier, Olivier
Publisher: name: arXiv
Year: 2016
Subjects: subject: Category Theory (math.CT)
subject: FOS: Mathematics
subject: 15A03, 15A21, 15A22, 18Exx

description: Matrix pencils, or pairs of matrices, are used in a variety of applications. By the Kronecker decomposition Theorem, they admit a normal form. This normal form consists of four parts, one part based on the Jordan canonical form, one part made of nilpotent matrices, and two other dual parts, which we call the observation and control part. The goal of this paper is to show that large portions of that decomposition are still valid for pairs of morphisms of modules or abelian groups, and more generally in any abelian category. % This gives a new perspective even in the vector space case, as we have to use radically new proof techniques to work on abelian categories. In the vector space case, we recover the full Kronecker decomposition theorem. The main technique is that of reduction, which extends readily to the abelian category case. Reductions naturally arise in two flavours, which are dual to each other. There are a number of properties of those reductions which extend remarkably from the vector space case to abelian categories. First, both types of reduction commute. Second, at each step of the reduction, one can compute three sequences of invariant spaces (objects in the category), which generalize the Kronecker decomposition into nilpotent, observation and control blocks. These sequences indicate whether the system is reduced in one direction or the other. In the category of modules, there is also a relation between these sequences and the resolvent set of the pair of morphisms, which generalizes the regular pencil theorem. We also indicate how this allows to define invariant subspaces in the vector space case, and study the notion of strangeness as an example.
Additional file 1 of Psychometric properties of the cultural mix coping inventory for stressful situations using physical education teachers: a multidimensional item response theory analysis
Creators: name: Quansah, Frank
name: Hagan, John Elvis
name: Frimpong, James Boadu
name: Srem-Sai, Medina
name: Agormedah, Edmond Kwesi
name: Ankomah, Francis
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1. Appendices A and B. The Appendix A presents the frequency and percentage counts for the responses provided on all the items. Appendix B presents the marginal fit (X2) and standardized LD X2 Statistics (local independence) for the items.
Topological superconducting phases from inversion symmetry breaking order in spin-orbit-coupled systems
Creators: name: Wang, Yuxuan
name: Cho, Gil Young
name: Hughes, Taylor L.
name: Fradkin, Eduardo
Publisher: name: arXiv
Year: 2016
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We analyze the superconducting instabilities in the vicinity of the quantum-critical point of an inversion symmetry breaking order. We first show that the fluctuations of the inversion symmetry breaking order lead to two degenerate superconducting (SC) instabilities, one in the $s$-wave channel, and the other in a time-reversal invariant odd-parity pairing channel (the simplest case being the same as the of $^3$He-B phase). Remarkably, we find that unlike many well-known examples, the selection of the pairing symmetry of the condensate is independent of the momentum-space structure of the collective mode that mediates the pairing interaction. We found that this degeneracy is a result of the existence of a conserved fermionic helicity, $χ$, and the two degenerate channels correspond to even and odd combinations of SC order parameters with $χ=\pm1$. As a result, the system has an enlarged symmetry $U(1)\times U(1)$, with each $U(1)\times U(1)$ corresponding to one value of the helicity $χ$. Because of the enlarged symmetry, this system admits exotic topological defects such as a fractional quantum vortex, which we show has a Majorana zero mode bound at its core. We discuss how the enlarged symmetry can be lifted by small perturbations, such as the Coulomb interaction or Fermi surface splitting in the presence of broken inversion symmetry, and we show that the resulting superconducting state can be topological or trivial depending on parameters. The $U(1)\times U(1)$ symmetry is restored at the phase boundary between the topological and trivial SC states, and allows for a transition between topologically distinct SC phases without the vanishing of the order parameter. We present a global phase diagram of the superconducting states and discuss possible experimental implications.
description: 14 pages, 5 figures, to match the published version
Mass determination of K2-19b and K2-19c from radial velocities and transit timing variations
Creators: name: Nespral, D.
name: Gandolfi, D.
name: Deeg, H. J.
name: Borsato, L.
name: Fridlund, M. C. V
name: Barragan, O.
name: Alonso, R.
name: Grziwa, S.
name: Korth, J.
name: Cabrera, J.
name: Csizmadia, Sz.
name: Nowak, G.
name: Kuutma, T.
name: Saario, J.
name: Eigmuller, P.
name: Erikson, A.
name: Guenther, E. W.
name: Hatzes, A. P.
name: Rodriguez, P. Montanes
name: Palle, E.
name: Patzold, M.
name: Prieto-Arranz, J.
name: Rauer, H.
name: Sebastian, D.
Publisher: name: arXiv
Year: 2016
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: We present FIES@NOT, HARPS-N@TNG, and HARPS@ESO-3.6m radial velocity follow-up observations of K2-19, a compact planetary system hosting three planets, of which the two larger ones, namely K2-19b and K2-19c, are close to the 3:2 mean motion resonance. An analysis considering only the radial velocity measurements detects K2-19b, the largest and most massive planet in the system, with a mass of $54.8\pm7.5$~M${_\oplus}$ and provides a marginal detection of K2-19c, with a mass of M$_\mathrm{c}$=$5.9^{+7.6}_{-4.3}$ M$_\oplus$. We also used the TRADES code to simultaneously model both our RV measurements and the existing transit-timing measurements. We derived a mass of $54.4\pm8.9$~M${_\oplus}$ for K2-19b and of $7.5^{+3.0}_{-1.4}$~M${_\oplus}$ for K2-19c. A prior K2-19b mass estimated by Barros et al. 2015, based principally on a photodynamical analysis of K2-19's light-curve, is consistent with both analysis, our combined TTV and RV analysis, and with our analysis based purely on RV measurements. Differences remain mainly in the errors of the more lightweight planet, driven likely by the limited precision of the RV measurements and possibly some yet unrecognized systematics.
Near isotropic behaviour of turbulent thermal convection
Creators: name: Nath, Dinesh
name: Pandey, Ambrish
name: Kumar, Abhishek
name: Verma, Mahendra K
Publisher: name: arXiv
Year: 2016
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: We investigate the anisotropy in turbulent convection in a 3D box using direct numerical simulation. We compute the anisotropic parameter $A = u_\perp^{2}/(2u_{\parallel}^{2})$, where $u_{\perp}$ and $u_{\parallel}$ are the components of velocity perpendicular and parallel to the buoyancy direction, the shell and ring spectra, and shell-to-shell energy transfers. We observe that the flow is nearly isotropic for the Prandtl number $\mathrm{Pr} \approx 1$, but the anisotropy increases with the Prandtl number. For $\mathrm{Pr}=\infty$, $A \approx 0.3$, thus anisotropy is not very significant even in extreme cases. We also observe that $u_{\parallel}$ feeds energy to $u_{\perp}$ via pressure. The computation of shell-to-shell energy transfers reveals that the energy transfer in turbulent convection is local and forward, similar to hydrodynamic turbulence. These results are consistent with the Kolmogorov's spectrum observed by Kumar et al.~[Phys. Rev. E {\bf 90}, 023016 (2014)] for turbulent convection.
Additional file 1 of Enhancing health and wellness by, for and with Indigenous youth in Canada: a scoping review
Creators: name: Okpalauwaekwe, Udoka
name: Ballantyne, Clifford
name: Tunison, Scott
name: Ramsden, Vivian R.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Science Policy
subject: Sociology
subject: FOS: Sociology

description: Additional file 1: Supplementary Material File 1. PRISMA-ScR Checklist.
Variation of barrier permeability for albumin and immunoglobulin G influx into cerebrospinal fluid
Creators: name: Seyfert, Sepp
name: Quill, Sabine
name: Faulstich, Andreas
Publisher: name: Kooperation de Gruyter
Year: 2009

description: Background: The aim of the present study was to analyze variations in permeability of albumin and immunoglobulin G (IgG) influx into cerebrospinal fluid (CSF) in a clinical setting. Methods: In a retrospective intra-individual comparison of CSF samples, we used the IgGIndex and its constituents to indicate alterations in IgG/albumin permeability. Results: We found altered IgGIndices in 25/64 patients (range –25% to +44%), with differently altered QAlb and QIgG values (–69% to +549%), unaltered IgG-Indices in a further 25/64 patients with equally altered QAlb and QIgG values (–46% to +107%), and no parameter alteration in 14/64 patients. Parameter alterations in 25/64 patients indicated that permeability of albumin was changed to different extents than for IgG. It changed in the same direction in 20/25 patients, and the opposite in five patients. In further 25/64 patients, equal QAlb and QIgG alterations indicated equally altered permeabilities and/or altered efflux of the proteins. In 14/64 patients, no alteration in permeability or efflux was seen. Conclusions: Results revealed surprisingly variable intra-individual changes in permeabilities for albumin and IgG in pathologic as well as normal CSF. Differing changes in permeability indicate that the diffusion paths of the two proteins may react to disturbances independently of each other. The details of the influx permeability for albumin and IgG into CSF illustrate the prospect of a more comprehensive insight into the protein exchange between blood and CSF. Clin Chem Lab Med 2009;47:955–8.
Additional file 2 of Enhancing health and wellness by, for and with Indigenous youth in Canada: a scoping review
Creators: name: Okpalauwaekwe, Udoka
name: Ballantyne, Clifford
name: Tunison, Scott
name: Ramsden, Vivian R.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Science Policy
subject: Sociology
subject: FOS: Sociology

description: Additional file 2: Supplementary Material File 2. Summary of critical appraisals of individual sources of evidence.