cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 3: Table S2. of Microbial phylogeny determines transcriptional response of resistome to dynamic composting processes
Creators: name: Wang, Cheng
name: Dong, Da
name: P. Strong
name: Weijing Zhu
name: Ma, Zhuang
name: Qin, Yong
name: Weixiang Wu
Publisher: name: Figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Primers and PCR conditions in this study. (DOCX 23.3 kb)
Mapping invasive noxious weed species in the alpine grassland ecosystems using very high spatial resolution UAV hyperspectral imagery and a novel deep learning model
Creators: name: Xing, Fei
name: An, Ru
name: Guo, Xulin
name: Shen, Xiaoji
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: The term “invasive noxious weed species” (INWS), which refers to noxious weed plants that invade native alpine grasslands, has increasingly become an ecological and economic threat in the alpine grassland ecosystem of the Qinghai-Tibetan Plateau (QTP). Both the INWS and native grass species are small in physical size and share a habitat. Using remote sensing data to distinguish INWS from native alpine grass species remains a challenge. High spatial resolution hyperspectral imagery provides an alternative for addressing this problem. Here, we explored the use of unmanned aerial vehicle (UAV) hyperspectral imagery and deep learning methods with a small sample size for mapping the INWS in mixed alpine grasslands. To assess the method, UAV hyperspectral data with a very high spatial resolution of 2 cm were collected from the study site, and a novel convolutional neural network (CNN) model called 3D&2D-INWS-CNN was developed to take full advantage of the rich information provided by the imagery. The results indicate that the proposed 3D&2D-INWS-CNN model applied to the collected imagery for mapping INWS and native species with small ground truth training samples is robust and sufficient, with an overall classification accuracy exceeding 95% and a kappa value of 98.67%. The F1 score for each native species and INWS ranged from 92% to 99%. In conclusion, our results highlight the potential of using very high spatial resolution UAV hyperspectral data combined with a state-of-the-art deep learning model for INWS mapping even with small training samples in degraded alpine grassland ecosystems. Studies such as ours can aid the development of invasive species management practices and provide more data for decision-making in controlling the spread of invasive species in similar grassland ecosystems or, more widely, in terrestrial ecosystems.
Additional file 1: of Intrathecal morphine versus femoral nerve block for pain control after total knee arthroplasty: a meta-analysis
Creators: name: Tang, Yi
name: Tang, Xu
name: Qinghua Wei
name: Zhang, Hui
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Subgroup analysis results of VAS score. (DOCX 6040 kb)
Eotetranychus Oudemans 1931
Creators: name: Zhang, Lanni
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Prostigmata
Tetranychidae
Eotetranychus

description: Eotetranychus Oudemans, 1931
Eotetranychus Oudemans, 1931: 224. Type species: Trombidium tiliarium Hermann, 1804, by original designation (but erroneously referred to as Acarus telarius Linnaeus, 1758).
Apotetranychus Oudemans, 1931: 225. Type species: Apotetranychus muscicola Oudemans, 1931, by original designation (synonymy by Pritchard & Baker, 1955, p. 138).
Platytetranychus Oudemans, 1931: 224. Type species: Tetranychus gibbosus Canestrini, 1890, by original designation (synonymy by Pritchard & Baker, 1955, p. 138).
Diagnosis. Peritreme straight, recurved or anastomosing distally; opisthonotum with 12 pairs of setae (c1–3, d1–2, e1– 2, f1–2, h1–3; n.b. setae h2–3 are often posteroventral); seta f 1 in typical dorsocentral position; dorsal body setae slender, smooth or weakly serrated, usually as long or longer than distance to setal bases in next row; dorsal opisthosoma with mostly transverse striae, with some longitudinal striae laterally; two pairs of genital setae (g1–2); two pairs of pseudanal setae (ps1–2); tarsus I with two pairs of distal, adjacent duplex setae; tarsus II with one pair of duplex setae; empodial claw absent; empodium split into two sets of three proximoventral hairs, with proximal pair of hairs thicker than other two pairs (except often male tarsus I, and sometimes tarsus II, with proximoventral hairs reduced to short teeth, forming a pair short, broad trifid plates, or with middle pair of proximoventral hairs significantly thickened and uncinate, appearing as a pair of “claws” when viewed dorsally); male aedeagus variable in shape, but often tapering.
Remarks. The generic concepts of Gutierrez (1985) and Meyer (1987), expressed in the key to genera presented in Bolland et al. (1998), places Eotetranychus among a group of three other closely related genera, all with their taxonomic histories entangled: Mononychellus, Palmanychus and Platytetranychus. These genera share the complete opisthosomal setation for the Tetranychini (c1–3, d1–2, e1–2, f1–2, h1–3, ps1–2, g1–2, ag), duplex setae on tarsus I distal and adjacent, and females with their empodia split into two sets of three proximoventral hairs but lacking an empodial claw or spur. Eotetranychus is also closely related to Schizotetranychus and differs only in the often subtle morphology of the empodia (Pritchard & Baker 1955), discussed later. As classifying our new species to genus challenged us, we discuss each of the genera under consideration and their histories with Eotetranychus.
description: Published as part of Zhang, Lanni, 2017, A new Australian species of Eotetranychus (Acari: Tetranychidae) from buck spinifex Triodia mitchelli (Poaceae), intraspecific variation in Eotetranychus, and the synonymy of Platytetranychus with Eotetranychus, pp. 491-517 in Zootaxa 4324 (3) on pages 492-493, DOI: 10.11646/zootaxa.4324.3.5, http://zenodo.org/record/998438
BindingDB Entry 50019730: Discovery of the First Subnanomolar PPARα/δ Dual Agonist for the Treatment of Cholestatic Liver Diseases.
Creators: name: BindingDB
Publisher: name: BindingDB
Year: 2024
Subjects: Peroxisome proliferator-activated receptor alpha, Peroxisome proliferator-activated receptor delta, and Peroxisome proliferator-activated receptor gamma, China Pharmaceutical University, Affinity

description: Small molecule binding data for protein Peroxisome proliferator-activated receptor alpha, Peroxisome proliferator-activated receptor delta, and Peroxisome proliferator-activated receptor gamma, Uniprot P37231, Q03181, and Q07869
BindingDB Entry 50019729: Discovery of 2-(Anilino)pyrimidine-4-carboxamides as Highly Potent, Selective, and Orally Active Glycogen Synthase Kinase-3 (GSK-3) Inhibitors.
Creators: name: BindingDB
Publisher: name: BindingDB
Year: 2024
Subjects: AP2-associated protein kinase 1, Aurora kinase A, Aurora kinase B, Casein kinase I isoform alpha, Casein kinase II subunit alpha, Casein kinase II subunit alpha', Cyclin-dependent kinase 2, Cyclin-dependent kinase 5, Glycogen synthase kinase-3 alpha, Glycogen synthase kinase-3 beta, Insulin-like growth factor 1 receptor, Interleukin-1 receptor-associated kinase 1, Interleukin-1 receptor-associated kinase 4, MAP kinase-activated protein kinase 2, Mast/stem cell growth factor receptor Kit, Mitogen-activated protein kinase 14, Non-receptor tyrosine-protein kinase TYK2, Platelet-derived growth factor receptor alpha/beta, Platelet-derived growth factor receptor beta, Protein kinase C theta type, Ribosomal protein S6 kinase alpha-1, Serine/threonine-protein kinase pim-1, Tyrosine-protein kinase BTK, Tyrosine-protein kinase JAK1, Tyrosine-protein kinase JAK2, Tyrosine-protein kinase Lck, and Tyrosine-protein kinase SYK, Biocon-Bristol Myers Squibb Research and Development Center, Affinity

description: Small molecule binding data for protein AP2-associated protein kinase 1, Aurora kinase A, Aurora kinase B, Casein kinase I isoform alpha, Casein kinase II subunit alpha, Casein kinase II subunit alpha', Cyclin-dependent kinase 2, Cyclin-dependent kinase 5, Glycogen synthase kinase-3 alpha, Glycogen synthase kinase-3 beta, Insulin-like growth factor 1 receptor, Interleukin-1 receptor-associated kinase 1, Interleukin-1 receptor-associated kinase 4, MAP kinase-activated protein kinase 2, Mast/stem cell growth factor receptor Kit, Mitogen-activated protein kinase 14, Non-receptor tyrosine-protein kinase TYK2, Platelet-derived growth factor receptor alpha/beta, Platelet-derived growth factor receptor beta, Protein kinase C theta type, Ribosomal protein S6 kinase alpha-1, Serine/threonine-protein kinase pim-1, Tyrosine-protein kinase BTK, Tyrosine-protein kinase JAK1, Tyrosine-protein kinase JAK2, Tyrosine-protein kinase Lck, and Tyrosine-protein kinase SYK, Uniprot O60674, P05622, P06239, P08069, P09619, P10721, P11309, P19784, P23458, P24941, P26618, P29597, P43405, P48729, P49137, P49840, P49841, P51617, P68400, P97477, Q00535, Q04759, Q06187, Q15418, Q16539, Q2M2I8, Q69FE3, Q96GD4, and Q9NWZ3
Hydraena (Hydraenopsis) leechi Perkins
Creators: name: Perkins, Philip D.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Hydraenidae
Hydraena
Hydraena leechi

description: Hydraena (Hydraenopsis) leechi Perkins
(Fig. 37)
Hydraena leechi Perkins 1980: 103
The new records below document new localities, including first state records for New Mexico, and two new depositories for identified specimens of this species. The currently known distribution is southeastern Arizona south to northwestern Mexico and east to southern Oklahoma.
New records: U.S.A.: New Mexico, Hidalgo Co., Animas Mts., upper Indian Creek Canyon, Aspen Spring, 15.x.1997, leg. K. Score (86 MCZ); Texas, Jeff Davis Co., Creek crossing Route 118, 1.viii.2003, leg. A. E. Z. Short (AS-03-016) (1 SEMC); Davis Mts. on Route 118, 1.viii.2003, leg. A. E. Z. Short (AS-03-019) (2 SEMC); Davis Mts. Resort, upper Limpia Creek Cyn., (30°38’N, 104°8’W), 5.viii.2000, leg. E. G. Riley (23 TAMU); Davis Mts., Madera Cyn., 25.vi.1994, leg. E. G. Riley (1 TAMU); Route 118, NE Fort Davis, 1.viii.2003, leg. A. E. Z. Short (AS-03-017) (5 MCZ, SEMC).
description: Published as part of Perkins, Philip D., 2023, New Neotropical and Nearctic species of water beetles in the genera Hydraena Kugelann and Ochthebius Leach, a key to North American genera and subgenera of the family, new distribution records, and a synopsis of ecology, behavior and morphology related to aquatic life (Coleoptera: Hydraenidae), pp. 1-86 in Zootaxa 5367 (1) on page 67, DOI: 10.11646/zootaxa.5367.1.1, http://zenodo.org/record/10145106
Additional file 2: Table S1. of Microbial phylogeny determines transcriptional response of resistome to dynamic composting processes
Creators: name: Wang, Cheng
name: Dong, Da
name: P. Strong
name: Weijing Zhu
name: Ma, Zhuang
name: Qin, Yong
name: Weixiang Wu
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Summary statistics for compost metatranscriptome datasets. (DOCX 20.4 kb)
BindingDB Entry 50019728: Novel Medicinal Chemistry Strategies Targeting CDK5 for Drug Discovery.
Creators: name: BindingDB
Publisher: name: BindingDB
Year: 2024
Subjects: Cyclin-dependent kinase 1, Cyclin-dependent kinase 2, Cyclin-dependent kinase 4, Cyclin-dependent kinase 5, Cyclin-dependent kinase 6, Cyclin-dependent kinase 7, Cyclin-dependent kinase 9, Glycogen synthase kinase-3 beta, and Platelet-derived growth factor receptor alpha/beta, Sichuan University, Affinity

description: Small molecule binding data for protein Cyclin-dependent kinase 1, Cyclin-dependent kinase 2, Cyclin-dependent kinase 4, Cyclin-dependent kinase 5, Cyclin-dependent kinase 6, Cyclin-dependent kinase 7, Cyclin-dependent kinase 9, Glycogen synthase kinase-3 beta, and Platelet-derived growth factor receptor alpha/beta, Uniprot P05622, P06493, P11802, P24941, P26618, P49841, P50613, P50750, Q00534, and Q00535
An investigation of inversion method to measure the radial velocity of Kuroshio from Sentinel-1 SAR data
Creators: name: Tan, Benhua
name: Wang, Lihua
name: Ge, Dechen
name: Fang, Zhen
name: Sun, Weiwei
name: Feng, Tian
Publisher: name: Taylor & Francis
Year: 2024
Subjects: Cell Biology
Molecular Biology
Virology

description: Studies on the retrieval of ocean surface current by Synthetic Aperture Radar (SAR) mainly concentrate on coastal regions with land coverage, allowing for continuous land to estimate non-geophysical Doppler shifts. As a strong western boundary in the Western Pacific, the Kuroshio flows through mostly islands or open sea, and lacks land coverage for range bias correction. We propose a non-geophysical Doppler shift correction algorithm suitable for Kuroshio observation. Three solutions matching different land coverage were adopted in the range direction, and the scalloping was removed by using average filtering in the azimuth direction. Comparison between SAR radial velocity and Global Surface Lagrangian Drifter (GLD) reveals that the correlation coefficient (R2) increase to 0.686, and root mean square error (RMSE) of 0.215 m/s after non-geophysical corrections, while the wind-wave bias corrections make R2 increase to 0.806 and RMSE decrease to 0.13 m/s. There is also a good consistency between SAR inversion and Regional Ocean Circulation Model (ROMS). Sensitivity analysis illustrates that ascending pass is more suitable for monitoring Kuroshio, and high incidence angles are less affected by ocean conditions and non-geophysical factors. The algorithm can be used in regions with discontinuous or absent land. Three schemes for various land coverage in the range direction, including AP, IAP, and NIAP.Using average filter to remove the scalloping signal in the azimuth direction.SAR currents compared with GLD data, R2 of 0.806 and RMSE of 0.13 m/s.The method can be used in both coastal and island/offshore regions. Three schemes for various land coverage in the range direction, including AP, IAP, and NIAP. Using average filter to remove the scalloping signal in the azimuth direction. SAR currents compared with GLD data, R2 of 0.806 and RMSE of 0.13 m/s. The method can be used in both coastal and island/offshore regions.
BindingDB Entry 50019727: Carbohydrate Strengthens the Immunotherapeutic Effect of Small-Molecule PD-L1 Inhibitors.
Creators: name: BindingDB
Publisher: name: BindingDB
Year: 2024
Subjects: Platelet-derived growth factor receptor alpha/beta, Zhejiang University, Affinity

description: Small molecule binding data for protein Platelet-derived growth factor receptor alpha/beta, Uniprot P05622 and P26618
BindingDB Entry 50019726: Design and Optimization of Novel Benzimidazole- and Imidazo[4,5-
Creators: name: BindingDB
Publisher: name: BindingDB
Year: 2024
Subjects: Serine-protein kinase ATM, Eberhard Karls University of Tubingen, Affinity

description: Small molecule binding data for protein Serine-protein kinase ATM, Uniprot Q13315
Additional file 2: Table S1. of Microbial phylogeny determines transcriptional response of resistome to dynamic composting processes
Creators: name: Wang, Cheng
name: Dong, Da
name: P. Strong
name: Weijing Zhu
name: Ma, Zhuang
name: Qin, Yong
name: Weixiang Wu
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Summary statistics for compost metatranscriptome datasets. (DOCX 20.4 kb)
Hydraena (Hydraenopsis) limpidicollis Perkins
Creators: name: Perkins, Philip D.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Hydraenidae
Hydraena
Hydraena limpidicollis

description: Hydraena (Hydraenopsis) limpidicollis Perkins
Hydraena limpidicollis Perkins 1980: 167
The new records below document new localities, first records from Venezuela, and a new depository for specimens of this species. The new records raise the number of identified specimens in museum collections from 15 to 26. The currently known distribution is Panama and Venezuela.
New records: Venezuela: Aragua, Henri Pittier National Park, Río Cumboto, (10°23.626’N, 67°47.758’W), 4.i.2009, leg. Short, Garcia, Miller (VZ09-0104-02B) (5 SEMC); Zulia, Perija National Park, Tukuko, Rio Manantial, (9°50.49’N, 72°49.31’W), 29.i.2009, leg. Short, Garcia, Camacho (VZ09-0129-01A) (6 SEMC).
description: Published as part of Perkins, Philip D., 2023, New Neotropical and Nearctic species of water beetles in the genera Hydraena Kugelann and Ochthebius Leach, a key to North American genera and subgenera of the family, new distribution records, and a synopsis of ecology, behavior and morphology related to aquatic life (Coleoptera: Hydraenidae), pp. 1-86 in Zootaxa 5367 (1) on page 67, DOI: 10.11646/zootaxa.5367.1.1, http://zenodo.org/record/10145106
Additional file 1: Figure S1. of Microbial phylogeny determines transcriptional response of resistome to dynamic composting processes
Creators: name: Wang, Cheng
name: Dong, Da
name: P. Strong
name: Weijing Zhu
name: Ma, Zhuang
name: Qin, Yong
name: Weixiang Wu
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Changes in temperature of composting material during the manure composting process. (PDF 259 kb)
LSL-SS-Net: level set loss-guided semantic segmentation networks for landslide extraction
Creators: name: Yang, Yueheng
name: Miao, Zelang
name: Li, Xiaojing
name: Zhang, Hua
name: Chen, Shuai
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified

description: A landslide inventory is essential for numerous applications, including disaster prevention and mitigation. The emergence of advanced satellite technologies and the proliferation of extensive satellite imagery have greatly enhanced the role of deep learning-based semantic segmentation networks in the development of comprehensive landslide inventories. In deep learning, especially in semantic segmentation tasks, the loss function is crucial to guide the training of neural networks. However, typical loss functions have several challenges and shortcomings, including difficulty in handling objects of different scales and neglecting spatial correlation. These drawbacks hinder semantic segmentation networks from solely concentrating on accurately predicting landslide categories with rich semantic information. The spatial details (e.g. small landslides and precise landslide boundary information) in the segmentation results may be lost, reducing the accuracy of landslide extraction. Most studies only focus on training and detection in the local region. Consequently, detecting new unexplored region and detrimental to emergency response is challenging. This study presents a level set loss-guided semantic segmentation network, which can be integrated with different semantic segmentation networks, to address these issues. Three out of five study areas (e.g. Bijie, Jiuzhaigou, and Taitung) are used for model training and accuracy evaluation, while the rest, which are newly unexplored regions (e.g. Hokkaido and Haiti), are used to test the transferability of the proposed loss function in different regions. The study results validate the effectiveness of the designed level set loss in various semantic segmentation networks and in different study areas for landslide extraction.
BindingDB Entry 50019725: An Analysis of Successful Hit-to-Clinical Candidate Pairs.
Creators: name: BindingDB
Publisher: name: BindingDB
Year: 2024
Subjects: Tyrosine-protein phosphatase non-receptor type 11, Jnana Therapeutics, Affinity

description: Small molecule binding data for protein Tyrosine-protein phosphatase non-receptor type 11, Uniprot Q06124
Leptotrombidium (Leptotrombidium) keukenschrijveri
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Leptotrombidium
Leptotrombidium keukenschrijveri

description: Leptotrombidium (Leptotrombidium) keukenschrijveri (Walch, 1923):
ORI
Trombicula keukenschrijveri Walch, 1923; Gunther 1952
Trombicula (Trombicula) keukenschrijveri, Thor & Willmann 1947
Trombicula (Leptotrombidium) keukenshrijveri, Wharton & Fuller 1952; Womersley 1952
Leptotrombidium keukenshrijveri, Radford 1954 a; Stekolnikov 2013 [magnum group], 2021
Leptotrombidium (Leptotrombidium) keukenschrijveri, Vercammen-Grandjean & Langston 1976
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 132, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
BindingDB Entry 50019724: Rational Design of Covalent Kinase Inhibitors by an Integrated Computational Workflow (Kin-Cov).
Creators: name: BindingDB
Publisher: name: BindingDB
Year: 2024
Subjects: LIM domain kinase 1, LIM domain kinase 2, Mitogen-activated protein kinase kinase kinase 20, Serine/threonine-protein kinase B-raf, and Tyrosine-protein kinase Lck, Jinan University, Affinity

description: Small molecule binding data for protein LIM domain kinase 1, LIM domain kinase 2, Mitogen-activated protein kinase kinase kinase 20, Serine/threonine-protein kinase B-raf, and Tyrosine-protein kinase Lck, Uniprot P06239, P15056, P53667, P53671, and Q9NYL2
Additional file 1: Figure S1. of Microbial phylogeny determines transcriptional response of resistome to dynamic composting processes
Creators: name: Wang, Cheng
name: Dong, Da
name: P. Strong
name: Weijing Zhu
name: Ma, Zhuang
name: Qin, Yong
name: Weixiang Wu
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Changes in temperature of composting material during the manure composting process. (PDF 259 kb)
BindingDB Entry 50019723: Discovery of Novel 1,3-Diphenylpyrazine Derivatives as Potent S-Phase Kinase-Associated Protein 2 (Skp2) Inhibitors for the Treatment of Cancer.
Creators: name: BindingDB
Publisher: name: BindingDB
Year: 2024
Subjects: S-phase kinase-associated protein 2, Zhengzhou University, Affinity

description: Small molecule binding data for protein S-phase kinase-associated protein 2, Uniprot Q13309
Solution for crop classification in regions with limited labeled samples: deep learning and transfer learning
Creators: name: Wang, Hengbin
name: Yao, Yu
name: Ye, Zijing
name: Chang, Wanqiu
name: Liu, Junyi
name: Zhao, Yuanyuan
name: Li, Shaoming
name: Liu, Zhe
name: Zhang, Xiaodong
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Computational Biology

description: Reliable classification results are crucial for guiding agricultural production, forecasting crop yield, and ensuring food security. Generating reliable classification results is relatively simple in regions with sufficient labeled samples, but regions with limited labeled samples remain a significant challenge. In this study, we propose two new solutions that leverage the feature representation capabilities of deep learning and the sample reuse potential of transfer learning to solve the limited label problem. Specifically, we develop a Variable-dimensional Symmetric Network with Position Encoding (VPSNet) to improve the efficiency of labeled sample utilization. Additionally, we introduce a transfer strategy based on the Inter-Regional Discrepancies in Crop Time Series (IRDCTS) to expand the labeled sample reuse region. We evaluated the proposed model in three regions with limited labels between 2017 and 2018. Experimental results show that our model has superior discriminative feature extraction capabilities compared to other existing models. The feasibility of the proposed transfer strategy is tested in three pair regions, showing that IRDCTS can enhance the model adaptability by reducing inter-domain discrepancies. This study provides a comprehensive solution to the classification problem of the limited labeled samples, involving both the development of classification models and the implementation of transfer strategies.
Hydraena (Hydraenopsis) longicollis Sharp
Creators: name: Perkins, Philip D.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Hydraenidae
Hydraena
Hydraena longicollis

description: Hydraena (Hydraenopsis) longicollis Sharp
Hydraena longicollis Sharp 1882: 93
The new record below documents a new locality and a first record for Belize. The currently known distribution is southern Mexico, Guatemala, Belize, and Nicaragua.
New record: Belize: Stann Creek, Kendal; ex side pool of Sittee River at bridge (16°48’42.12’’N, 88°24’5.76’’W), 2.v.1987, leg. P. J. Spangler & R. A. Faitoute (8 NMNH).
description: Published as part of Perkins, Philip D., 2023, New Neotropical and Nearctic species of water beetles in the genera Hydraena Kugelann and Ochthebius Leach, a key to North American genera and subgenera of the family, new distribution records, and a synopsis of ecology, behavior and morphology related to aquatic life (Coleoptera: Hydraenidae), pp. 1-86 in Zootaxa 5367 (1) on page 67, DOI: 10.11646/zootaxa.5367.1.1, http://zenodo.org/record/10145106
BindingDB Entry 50019722: Structure-Based Development of Isoform-Selective Inhibitors of Casein Kinase 1ε vs Casein Kinase 1δ.
Creators: name: BindingDB
Publisher: name: BindingDB
Year: 2024
Subjects: Casein kinase I isoform delta and Casein kinase I isoform epsilon, The Scripps Research Institute, Affinity

description: Small molecule binding data for protein Casein kinase I isoform delta and Casein kinase I isoform epsilon, Uniprot P48730 and P49674
MOESM7 of Increasing on-target cleavage efficiency for CRISPR/Cas9-induced large fragment deletion in Myxococcus xanthus
Creators: name: Yang, Ying-Jie
name: Wang, Ye
name: Li, Zhi-Feng
name: Gong, Ya
name: Zhang, Peng
name: Hu, Wen-Chao
name: Duo-Hong Sheng
name: Li, Yue-Zhong
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Pharmacology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 7: Table S2. Primers used in this study.
BindingDB Entry 50019720: Discovery of a New-Generation S-Adenosylmethionine-Noncompetitive Covalent Inhibitor Targeting the Lysine Methyltransferase Enhancer of Zeste Homologue 2.
Creators: name: BindingDB
Publisher: name: BindingDB
Year: 2024
Subjects: DNA (cytosine-5)-methyltransferase 1, Histone-arginine methyltransferase CARM1, Histone-lysine N-methyltransferase 2A, Histone-lysine N-methyltransferase 2B, Histone-lysine N-methyltransferase EHMT1, Histone-lysine N-methyltransferase EHMT2, Histone-lysine N-methyltransferase EZH2, Histone-lysine N-methyltransferase NSD2, Histone-lysine N-methyltransferase, H3 lysine-36 specific, Protein arginine N-methyltransferase 1, and Protein arginine N-methyltransferase 5, Sun Yat-Sen University, Affinity

description: Small molecule binding data for protein DNA (cytosine-5)-methyltransferase 1, Histone-arginine methyltransferase CARM1, Histone-lysine N-methyltransferase 2A, Histone-lysine N-methyltransferase 2B, Histone-lysine N-methyltransferase EHMT1, Histone-lysine N-methyltransferase EHMT2, Histone-lysine N-methyltransferase EZH2, Histone-lysine N-methyltransferase NSD2, Histone-lysine N-methyltransferase, H3 lysine-36 specific, Protein arginine N-methyltransferase 1, and Protein arginine N-methyltransferase 5, Uniprot O14744, O96028, P26358, Q03164, Q15910, Q86X55, Q96KQ7, Q96L73, Q99873, Q9H9B1, and Q9UMN6
BindingDB Entry 50019718: Discovery of Novel Bruton's Tyrosine Kinase PROTACs with Enhanced Selectivity and Cellular Efficacy.
Creators: name: BindingDB
Publisher: name: BindingDB
Year: 2024
Subjects: Protein cereblon and Tyrosine-protein kinase BTK, Stony Brook University, Affinity

description: Small molecule binding data for protein Protein cereblon and Tyrosine-protein kinase BTK, Uniprot Q06187 and Q96SW2
BindingDB Entry 50019717: -Guided Rational Drug Design and Synthesis of Novel 4-(Thiophen-2-yl)butanamides as Potent and Selective TRPV1 Agonists.
Creators: name: BindingDB
Publisher: name: BindingDB
Year: 2024
Subjects: Transient receptor potential cation channel subfamily A member 1, Transient receptor potential cation channel subfamily M member 8, Transient receptor potential cation channel subfamily V member 1, and Transient receptor potential cation channel subfamily V member 4, Magna Gracia University, Affinity

description: Small molecule binding data for protein Transient receptor potential cation channel subfamily A member 1, Transient receptor potential cation channel subfamily M member 8, Transient receptor potential cation channel subfamily V member 1, and Transient receptor potential cation channel subfamily V member 4, Uniprot Q6RI86, Q8NER1, Q8R455, and Q9ERZ8
BindingDB Entry 50019716: Discovery of an Anti-TNF-α 9-mer Peptide from a T7 Phage Display Library for the Treatment of Inflammatory Bowel Disease.
Creators: name: BindingDB
Publisher: name: BindingDB
Year: 2024
Subjects: Tumor necrosis factor, Tumor necrosis factor receptor superfamily member 1A, and Tumor necrosis factor receptor superfamily member 1B, Tongji University, Affinity

description: Small molecule binding data for protein Tumor necrosis factor, Tumor necrosis factor receptor superfamily member 1A, and Tumor necrosis factor receptor superfamily member 1B, Uniprot P01375, P19438, and P20333
Leptotrombidium (Leptotrombidium) kiangsuense Chen 1975
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Leptotrombidium
Leptotrombidium kiangsuense

description: Leptotrombidium (Leptotrombidium) kiangsuense Chen, 1975:
PAL
Leptotrombidium (Leptotrombidium) kiangsuensis Chen, 1975
Leptotrombidium (Leptotrombidium) kiangsuense, Li et al. 1997
Leptotrombidium kiangsuense, Stekolnikov 2013 [9 group]
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 132, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Hydraena (Hydraenopsis) particeps Perkins
Creators: name: Perkins, Philip D.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Hydraenidae
Hydraena
Hydraena particeps

description: Hydraena (Hydraenopsis) particeps Perkins
Hydraena particeps Perkins 1980: 142
The new records below document two new localities, a new depository for identified specimens of this species, and a first record for Nicaragua. The currently known distribution is from Honduras south to Panama and east through Venezuela to Trinidad and Grenada.
New records: Nicaragua: Rivas, 28 km NW Rivas, unnamed stream, (11°37’N, 85°56’W), 6.iv.2005, leg. William D. Shepard (1 MCZ); Panama: Canal Zone, Fort Kobbe, 9.vi.1976, leg. E. G. Riley (1 TAMU).
description: Published as part of Perkins, Philip D., 2023, New Neotropical and Nearctic species of water beetles in the genera Hydraena Kugelann and Ochthebius Leach, a key to North American genera and subgenera of the family, new distribution records, and a synopsis of ecology, behavior and morphology related to aquatic life (Coleoptera: Hydraenidae), pp. 1-86 in Zootaxa 5367 (1) on page 68, DOI: 10.11646/zootaxa.5367.1.1, http://zenodo.org/record/10145106
Multi-source point cloud registration for urban areas using a coarse-to-fine approach
Creators: name: Lee, Eunkwan
name: Kwon, Youngmok
name: Kim, Cheolhwan
name: Choi, Wonjun
name: Sohn, Hong-Gyoo
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Space Science
subject: Physical Sciences not elsewhere classified
subject: Microbiology
subject: FOS: Biological sciences
subject: Neuroscience
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Information Systems not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Mental Health
subject: Computational Biology

description: The foundational step in constructing a digital twin involves transforming the physical world into an immersive 3D virtual environment. Unmanned aerial vehicle (UAV)-based photogrammetry, mobile mapping system (MMS), and terrestrial laser scanning (TLS) serve as powerful tools for 3D reconstruction of urban environments. Given the distinctive strengths and weaknesses of each sensor, a multi-source point cloud registration technique is imperative to achieve a detailed and precisely geolocated 3D urban model. Hence, we developed coarse-to-fine approach methods, called building exterior wall-based (BEWB) and building outline-based (BOB) algorithms, to register point clouds captured by diverse sensors in urban scenes. The BEWB algorithm coarsely registers urban point clouds by extracting building exterior walls, establishing correspondence points, and effectively removing outliers within this correspondence point set. The BOB algorithm precisely registers the urban point clouds acquired from multiple sensors by leveraging building outlines and points corresponding to the ground of the point clouds. To validate the proposed algorithms, we initially registered a UAV-based photogrammetry point cloud with the MMS point cloud and subsequently registered the TLS point clouds. Comprehensive quantitative and qualitative analyzes of the results demonstrate that our algorithms outperform existing methods in achieving precise registration. By successfully registering three distinct point clouds, we generated a comprehensive urban scene point cloud characterized by enhanced precision, point density, and geolocation accuracy.
Analyst's Notebook: a PDS Data Discovery Tool
Creators: name: Stein, Thomas
Publisher: name: Zenodo
Year: 2024
Subjects: Data discovery
Mars rover
Analyst's Notebook
Planetary Data System

description: The Planetary Data System (PDS) Analyst’s Notebook (AN) is a dynamic web application containing peer-reviewed, publicly available data delivered by the instrument teams, supported by documentation describing context for the observations, processing methodology, and data formats (an.rsl.wustl.edu). Notebooks are accessible for NASA landed missions, including Mars 2020 Perseverance rover, Mars InSight Lander, Mars Science Laboratory Curiosity rover, Mars Exploration Rovers Spirit and Opportunity, Mars Phoenix Lander, and the lunar Apollo and LCROSS missions. Data and documents from ongoing missions are incorporated into the AN when released to the PDS archive. Addition, non-archive material provided by mission science teams is also incorporated into the AN, including daily operations reports, activity plans, science targets, and rover location information. Content within the AN is organized into sections mirroring the structure of a physical notebook: Mission, Sol, Search, Maps, Sample Science (Mars 2020 only), Resources, User Management, and Help. New features and capabilities are added at the request of users. Users can customize their experience through a complimentary account, ensuring a synchronized experience across various devices and browsers. This account efficiently manages the user's viewing history, image annotations and measurements, personalized bookmarks, and data orders.
Additional file 1: Table S1. of Association between periodontal disease and mortality in people with CKD: a meta-analysis of cohort studies
Creators: name: Zhang, Jian
name: Jiang, Hong
name: Sun, Min
name: Jianghua Chen
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: Adjustments in studies included in the meta-analysis. (DOCX 75Â kb)
BindingDB Entry 50019715: Synthesis and Development of Highly Selective Pyrrolo[2,3-
Creators: name: BindingDB
Publisher: name: BindingDB
Year: 2024
Subjects: Epidermal growth factor receptor and Macrophage colony-stimulating factor 1 receptor, Norwegian University of Science and Technology (NTNU), Affinity

description: Small molecule binding data for protein Epidermal growth factor receptor and Macrophage colony-stimulating factor 1 receptor, Uniprot P00533 and P07333
Molecular characterization of mucosal adherent bacteria and associations with colorectal adenomas
Creators: name: Randall, T
name: Jenkins, N
name: Rawls, J.F
name: Mpande, C.N
name: Shen, X.J
name: Keku, T.O
name: Abdo, Z
name: Burcal, L
name: Jovov, B
name: sandler, R.S
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2010

description: The human large bowel is colonized by complex and diverse bacterial communities. However, the relationship between commensal bowel bacteria and adenomas (colorectal cancer precursors) is unclear. This study aimed to characterize adherent bacteria in normal colon and evaluate differences in community composition associated with colorectal adenomas. We evaluated adherent bacteria in normal colonic mucosa of 21 adenoma and 23 non-adenoma subjects enrolled in a cross sectional study. Terminal restriction fragment length polymorphism, clone sequencing and fluorescent in-situ hybridization analysis of the 16S rRNA genes were used to characterize adherent bacteria. A total of 335 clones were sequenced and processed for phylogenetic and taxonomic analysis. Differences in bacterial composition between cases and controls were evaluated by UniFrac and analysis of similarity matrix. Overall, Firmicutes (62%), Bacteroidetes (26%) and Proteobacteria (11%) were the most dominant phyla. The bacterial composition differed significantly between cases and controls (UniFrac p < 0.001). We observed significantly higher abundance of Proteobacteria (p < 0.05) and lower abundance of Bacteroidetes (p < 0.05) in cases compared to controls. At the genus level, case subjects showed increased abundance of Dorea spp. (p < 0.005), Faecalibacterium spp. (p < 0.05) and lower proportions of Bacteroides spp. (p < 0.03) and Coprococcus spp. (p < 0.05) than controls. Cases had higher bacterial diversity and richness than controls. These findings reveal that alterations in bacterial community composition associated with adenomas may contribute to the etiology of colorectal cancer. Extension of these findings could lead to strategies to manipulate the microbiota to prevent colorectal adenomas and cancer as well as to identify individuals at high risk.
Putting professional development into practice: The relationship between teacher motivation and PD implementation
Creators: name: McClam, Rachel
name: Caroleo, Sarah Ann
Publisher: name: Open Science Framework
Year: 2023
Subjects: subject: Teacher Education and Professional Development
subject: Education
subject: teacher
subject: EVC
subject: EVC-PD
subject: PD
subject: motivation
subject: PD implementation
subject: professional development
subject: teacher motivation

description: The current study aims to garner a stronger understanding of how teachers perceive and adopt new learning presented in PD, specifically by examining the relationship between teacher motivation following a learning opportunity to the extent of incorporation of the training’s content into their practice. Schools and districts allocate budget money each year towards PD learning opportunities for teachers. Knowing how teachers perceive that learning and how different perceptions translate into practice will support schools and districts to better direct and maximize their funds. It will also support developers of teacher PD to design trainings aligned to empirically-supported practices that foster motivation to transfer. Specifically, via survey responses and classroom observations, we seek to establish (1) which aspects of the EVC-PD scale most predict teachers’ intentions to utilize a newly-learned practice, (2) whether teachers’ initial appraisals of EVC relate to their incorporation of those practices into their classrooms, and (3) whether ongoing implementation of a practice changes their EVC appraisals over time. Additionally, via open-ended written responses, interviews, and focus groups, we aim to uncover the underlying mechanisms that inform this relationship. This knowledge can have important implications for how schools approach, measure, and support teachers to incorporate professional development efforts they undertake.
A nonparametric approach for detecting urban polycentric spatial structure in China using remote sensing nighttime light and point of interest data
Creators: name: Jiang, Linlin
name: Wu, Yizhen
name: Wang, Junru
name: Han, Huiran
name: Shi, Kaifang
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Space Science
subject: Environmental Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Plant Biology
subject: FOS: Biological sciences

description: Effectively identifying urban polycentric spatial structure (UPSS) is essential for data-driven evaluation of urban performance, and it serves as a scientific basis for urban spatial planning. However, existing identification methods have limitations such as subjectivity, poor spatial continuity, and a narrow application scale. Thus, from a morphology perspective, our study proposed a rapid, highly applicable, and spatiotemporally comparable nonparametric approach for detecting morphological urban polycentric spatial structure (MUPS) by integrating remote sensing nighttime light (NTL) and point of interest (POI) data. Taking China as an object, on the basis of recognizing urban entities using NTL data, a wavelet transform was initially introduced to fuse multi-source geospatial data, thereby enhancing the spatial intricacy within a city. Then, a local spatial autocorrelation model was utilized to identify pixel clusters. Finally, post-processing was performed to optimize urban centers, subsequently calculating MUPS. Results reveal that urban entities identified based on NTL have a significant advantage in characterizing the concentration of human activities, which can ensure the accuracy of extracting MUPS. Compared with existing relevant methods, the proposed nonparametric approach avoids the misalignment of multi-temporal urban center distribution, enhancing accuracy and stability. Differentiated spatiotemporal patterns were found in the evolutionary trajectories of MUPS in China, with a progressive intensification in the degree of spatial decentralization. Our study provides valuable insights into spatiotemporal analyses of MUPS at multiple scales and serves as a foundational resource for urban spatial planning.
Additional file 1: Table S1. of Association between periodontal disease and mortality in people with CKD: a meta-analysis of cohort studies
Creators: name: Zhang, Jian
name: Jiang, Hong
name: Sun, Min
name: Jianghua Chen
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Adjustments in studies included in the meta-analysis. (DOCX 75Â kb)
BindingDB Entry 50019713: Discovery of (
Creators: name: BindingDB
Publisher: name: BindingDB
Year: 2024
Subjects: Histone deacetylase 1, Histone deacetylase 11, Histone deacetylase 2, Histone deacetylase 3, Histone deacetylase 4, Histone deacetylase 5, Histone deacetylase 6, Histone deacetylase 7, Histone deacetylase 8, Histone deacetylase 9, Polyamine deacetylase HDAC10, and Potassium voltage-gated channel subfamily H member 2, Shanghai Institute of Materia Medica, Affinity

description: Small molecule binding data for protein Histone deacetylase 1, Histone deacetylase 11, Histone deacetylase 2, Histone deacetylase 3, Histone deacetylase 4, Histone deacetylase 5, Histone deacetylase 6, Histone deacetylase 7, Histone deacetylase 8, Histone deacetylase 9, Polyamine deacetylase HDAC10, and Potassium voltage-gated channel subfamily H member 2, Uniprot O15379, P56524, Q12809, Q13547, Q8WUI4, Q92769, Q969S8, Q96DB2, Q9BY41, Q9UBN7, Q9UKV0, and Q9UQL6
Hydraena (Hydraenopsis) pontequula Perkins
Creators: name: Perkins, Philip D.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Hydraenidae
Hydraena
Hydraena pontequula

description: Hydraena (Hydraenopsis) pontequula Perkins
Hydraena pontequula Perkins 1980: 198
The new record below documents a new locality and a new depository for identified specimens of this species, which is currently known only from Panama.
New record: Panama, Howard Air Force Base, elev. 10 m (8°20’N, 79°50’W), 15–20.vii.1999, leg. A. Gillogly & J. Woolley (3 TAMU);
description: Published as part of Perkins, Philip D., 2023, New Neotropical and Nearctic species of water beetles in the genera Hydraena Kugelann and Ochthebius Leach, a key to North American genera and subgenera of the family, new distribution records, and a synopsis of ecology, behavior and morphology related to aquatic life (Coleoptera: Hydraenidae), pp. 1-86 in Zootaxa 5367 (1) on page 68, DOI: 10.11646/zootaxa.5367.1.1, http://zenodo.org/record/10145106