cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
title: 02_1018
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
Interplay between the edge-state magnetism and long-range Coulomb interaction in zigzag graphene nanoribbons: quantum Monte Carlo study
Creators: name: Raczkowski, Marcin
name: Assaad, Fakher F.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We perform projective quantum Monte Carlo simulations of zigzag graphene nanoribbons within a realistic model with long-range Coulomb interactions. Increasing the relative strength of nonlocal interactions with respect to the on-site repulsion does not generate a phase transition but has a number of nontrivial effects. At the single-particle level we observe a marked enhancement of the Fermi velocity at the Dirac points. At the two-particle level, spin- and charge-density-wave fluctuations compete. As a consequence, the edge magnetic moment is reduced but the edge dispersion relation increases in the sense that the single-particle gap at momentum $q=π/|{\pmb a}_1|$ grows. We attribute this to nonlocal charge fluctuations which assist the spin fluctuations to generate the aforementioned gap. In contrast, the net result of the interaction-induced renormalization of different energy scales is a constant spin-wave velocity of the edge modes. However, since the particle-hole continuum is shifted to higher energies---due to the renormalization of the Fermi velocity---Landau damping is reduced. As a result, a roughly linear spin-wave-like mode at the edge spreads out through a larger part of the Brillouin zone.
description: 11 pages, 11 figures, comment about doped nanoribbons
Additional file 13 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
Creators: name: Fu, Ning
name: Ji, Meiyuan
name: Rouard, Mathieu
name: Yan, Hai-Fei
name: Ge, Xue-Jun
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 13: Table S13. The indel polymorphism of some pairwise species with minimal interspecific K2P distance based on the combination of four most variable markers.
Additional file 1: of Identification, characterization and gene expression analyses of important flowering genes related to photoperiodic pathway in bamboo
Creators: name: Smritikana Dutta
name: Prasun Biswas
name: Sukanya Chakraborty
name: Devrani Mitra
name: Pal, Amita
name: Das, Malay
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology

description: Table S1. A summary of the oligonucleotides used in this study for different purposes. (DOC 90Â kb)
title: Linear Viscoelasticity of Complex Coacervates
Creators: name: Liu, Yalin
name: Winter, H. Henning
name: Perry, Sarah L.
Publisher: name: University of Massachusetts Amherst
Year: 2016
Subjects: subject: Coacervate
subject: Rheology
subject: Viscoelasticity
subject: Small-Amplitude Oscillatory Shear
subject: Polyelectrolytes
subject: Chemical Engineering
subject: FOS: Chemical engineering

description: The final published version can be found here: http://dx.doi.org/10.1016/j.cis.2016.08.010
description: Rheology is a powerful method for materials characterization that can provide detailed information about the self-assembly, structure, and intermolecular interactions present in a material. Here, we review the use of linear viscoelastic measurements for the rheological characterization of complex coacervate-based materials. Complex coacervation is an electrostatically and entropically-driven associative liquid-liquid phase separation phenomenon that can result in the formation of bulk liquid phases, or the self-assembly of hierarchical, microphase separated materials. We discuss the need to link thermodynamic studies of coacervation phase behavior with characterization of material dynamics, and provide parallel examples of how parameters such as charge stoichiometry, ionic strength, and polymer chain length impact self-assembly and material dynamics. We conclude by highlighting key areas of need in the field, and specifically call for the development of a mechanistic understanding of how molecular-level interactions in complex coacervate-based materials affect both self-assembly and material dynamics.
Additional file 14 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
Creators: name: Fu, Ning
name: Ji, Meiyuan
name: Rouard, Mathieu
name: Yan, Hai-Fei
name: Ge, Xue-Jun
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 14: Table S14. List of taxa and sources of plant material analyzed, and GenBank accession numbers of plastome of taxa used in the present study.
Vacuum and thermal energies for two oscillators interacting through a field
Creators: name: Bordag, M.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We consider a simple (1+1)-dimensional model for the Casimir-Polder interaction consisting of two oscillators coupled to a scalar field. We include dissipation in a first principles approach by allowing the oscillators to interact with heat baths. For this system, we derive an expression for the free energy in terms of real frequencies. From this representation, we derive the Matsubara representation for the case with dissipation. Further we consider the case of vanishing intrinsic frequencies of the oscillators. We show that in this case the contribution from the zeroth Matsubara frequency gets modified and no problems with the laws of thermodynamics appear.
description: 34 pages, submitted to TMF, several misprints corrected
Additional file 15 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
Creators: name: Fu, Ning
name: Ji, Meiyuan
name: Rouard, Mathieu
name: Yan, Hai-Fei
name: Ge, Xue-Jun
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 15: Table S15. The primers used for PCR in current study.
title: Candidature projet de résidence "FigurAction: cartographie et chorégraphie" Fondation Camargo 2018
Creators: name: Christmann, Mathilde
name: Maria, Amandine
name: Olmedo, Elise
name: Poisson, Mathias
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020

description: Candidature pour projet de résidence à la Fondation Camargo, réalisée par Mathilde Christmann; Amandine Maria; Elise Olmedo et Mathias Poisson.
MOESM1 of Microbial biogas production from hydrolysis lignin: insight into lignin structural changes
Creators: name: Mulat, Daniel
name: Dibdiakova, Janka
name: Horn, Svein
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Marine Biology

description: Additional file 1: Table S1. Assignments of 13C-1H correlation signals in the HSQC spectra of the lignin components in birch. Figure S1. FTIR spectra of untreated (A), steam-exploded (B), HL (C) and HL birch after AD (D).
Hitler Youth's Notebook
Creators: name: Project Team, Their Finest Hour
Publisher: name: University of Oxford
Year: 2024
Subjects: classificationCode: 430304
subject: British history
classificationCode: 430308
subject: European history (excl. British, classical Greek and Roman)
classificationCode: 430316
subject: International history

description: Peter found a Hitler Youth notebook on the body of a German soldier during the D-Day landings.Peter was part of the Queen's Own Regiment.
Wireless Operator Served in Burma
Creators: name: Project Team, Their Finest Hour
Publisher: name: University of Oxford
Year: 2024
Subjects: classificationCode: 430304
subject: British history
classificationCode: 430308
subject: European history (excl. British, classical Greek and Roman)
classificationCode: 430316
subject: International history

description: Albert did not speak much about his experiences in the war. He was in the Navy and spent a lot of time in North Africa. Albert was on the HMS Queen Elizabeth and trained as a wireless operator. He spent time serving in Burma as a wireless operator. Daughter has brought in a variety of Naval messages kept by her Father.
Multispectral Satellite Color Image Segmentation Using Fuzzy Based Innovative Approach.pdf
Creators: name: Dibya Jyoti Bora
Publisher: name: figshare
Year: 2018
Subjects: subject: 80104 Computer Vision
subject: FOS: Computer and information sciences
subject: Applied Computer Science
subject: 80106 Image Processing
subject: Artificial Intelligence and Image Processing
subject: 80199 Artificial Intelligence and Image Processing not elsewhere classified

description: Multispectral satellite color images need special treatment for object-based classification like segmentation. Traditional algorithms are not efficient enough for performing segmentation of such high-resolution images as they often result in a serious problem: over-segmentation. So, an innovative approach for segmentation of multispectral color images is proposed in this paper to tackle the same. The proposed approach consists of two phases. In the first phase, the pre-processing of the selected bands is conducted for noise removal and contrast enhancement of the input multispectral satellite color image on the HSV color space. In the second phase, fuzzy segmentation of the enhanced version of the image obtained in the first phase is carried out by FCM algorithm through optimal parameter passing. Final shifting from HSV to RGB color space presents the segmentation result by separating different regions of interest with proper and distinguished color labeling. The results found are quite promising and comparatively better than the other state of the art algorithms.
Eliminating the non-Gaussian spectral response of X-ray absorbers for transition-edge sensors
Creators: name: Yan, Daikang
name: Divan, Ralu
name: Gades, Lisa M.
name: Kenesei, Peter
name: Madden, Timothy J.
name: Miceli, Antonino
name: Park, Jun-Sang
name: Patel, Umeshkumar M.
name: Quaranta, Orlando
name: Sharma, Hemant
name: Bennett, Douglas A.
name: Doriese, William B.
name: Fowler, Joseph W.
name: Gard, Johnathon
name: Hays-Wehle, James
name: Morgan, Kelsey M.
name: Schmidt, Daniel R.
name: Swetz, Daniel S.
name: Ullom, Joel N.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: FOS: Physical sciences

description: Transition-edge sensors (TES) as microcalorimeters for high-energy-resolution X-ray spectroscopy are often fabricated with an absorber made of materials with high Z (for X-ray stopping power) and low heat capacity (for high resolving power). Bismuth represents one of the most compelling options. TESs with evaporated bismuth absorbers have shown spectra with undesirable and unexplained low-energy tails. We have developed TESs with electroplated bismuth absorbers over a gold layer that are not afflicted by this problem and that retain the other positive aspects of this material. To better understand these phenomena, we have studied a series of TESs with gold, gold/evaporated bismuth, and gold/electroplated bismuth absorbers, fabricated on the same die with identical thermal coupling. We show that bismuth morphology is linked to the spectral response of X-ray TES microcalorimeters.
Additional file 16 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
Creators: name: Fu, Ning
name: Ji, Meiyuan
name: Rouard, Mathieu
name: Yan, Hai-Fei
name: Ge, Xue-Jun
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 16: Table S16. The sequences of PCR products generated in this study with their accession names in Science DB (available at https://www.doi.org/10.11922/sciencedb.01436 ).
'I was there'
Creators: name: Project Team, Their Finest Hour
Publisher: name: University of Oxford
Year: 2024
Subjects: classificationCode: 430304
subject: British history
classificationCode: 430308
subject: European history (excl. British, classical Greek and Roman)
classificationCode: 430316
subject: International history

description: The contributor’s father wrote a book entitled 'I was there', which was never published but excerpts were included in the Echo.
The book was written in 1944-45.He was 27 and served for the entire war.
He was shot down twice.
The book starts on the troop ship, where he sailed from South Hampton. 10,000 men on a 6k capacity ship created inhumane living conditions.He served in North Africa, Sicily, Italy and Algeria. He was buried alive in a sandstorm, where several men died in North Africa. At some points, he had no food or water, and his throat was so dry he could barely speak.He married and had a child. Everyone was so excited to be going home on the boat to Calais, but a fellow soldier had been with another woman whilst abroad and could not face returning home to his wife and children, so he killed himself.He had a chameleon and a baby baboon as pets.He was a driver for officers and found out that one was using troops’ food to pay for prostitutes. He punched the officer but didn't get into trouble.
Additional file 17 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
Creators: name: Fu, Ning
name: Ji, Meiyuan
name: Rouard, Mathieu
name: Yan, Hai-Fei
name: Ge, Xue-Jun
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 17: Table S17. Partition scheme of 79 coding sequences (CDSs) used in this study.
Cigarette case saves life
Creators: name: Project Team, Their Finest Hour
Publisher: name: University of Oxford
Year: 2024
Subjects: classificationCode: 430304
subject: British history
classificationCode: 430308
subject: European history (excl. British, classical Greek and Roman)
classificationCode: 430316
subject: International history

description: Arthur was stationed in Italy where he was shot but was saved as the cigarette case he kept in his jacket pocket deflected the bullet. This saved his life. Arthur would then always carry the cigarette case with him.This was the only WW2 memory he would ever talk about.Arthur's Daughter brought in her Father's collection of medals, pin badges, documents and photos.
IFEM white paper on gender diversity and inclusion
Creators: name: Sheppard, Gillian
name: Hobgood, Cherri
name: McCarthy, Sally
name: Galletta, Gayle
name: Marathe, Priyadarshini
name: Geduld, Heike
name: Subhan, Imron
name: Davies, Ffion
Publisher: name: Springer Nature
Year: 2022

description:
The International Federation for Emergency Medicine (IFEM) is a federation of over 70 national and regional emergency medicine organizations whose mission is to advance the growth of high-quality emergency medical care through education and standards, to lead the collaboration and networking necessary to establish universal equality in service and care, and to promote the creation and growth of the specialty of emergency medicine (EM) in every country.
Changes in extracellular matrix in subcutaneous small resistance arteries of patients with essential hypertension
Creators: name: Favero, Gaia
name: Paini, Anna
name: Ciuceis, Carolina De
name: Rodella, Luigi F.
name: Moretti, Enrico
name: Porteri, Enzo
name: Rossini, Claudia
name: Ministrini, Silvia
name: Solaini, Leonardo
name: Caletti Stefano
name: Coschignano, Maria Antonietta
name: Brami, Valeria
name: Petelca, Alina
name: Nardin, Matteo
name: Valli, Ilenia
name: Tiberio, Guido A. M.
name: Bonomini, Francesca
name: Rosei, Claudia Agabiti
name: Portolani, Nazario
name: Rizzoni, Damiano
name: Rezzani, Rita
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Background: In the development of hypertensive microvascular remodeling, a relevant role may be played by changes in extracellular matrix proteins. Aim of this study was the to evaluate some extracellular matrix components within the tunica media of subcutaneous small arteries in 9 normotensive subjects and 12 essential hypertensive patients, submitted to a biopsy of subcutaneous fat from the gluteal or the anterior abdominal region. Patients and Methods: Subcutaneous small resistance arteries were dissected and mounted on an isometric myograph, and the tunica media to internal lumen ratio was measured. In addition, fibronectin, laminin, transforming growth factor-beta-1 (TGF-β1) and emilin-1 contents within the tunica media were evaluated by immunofluorescence and relative immunomorphometrical analysis (immunopositivity % of area). The total collagen content and collagen subtypes within the tunica media were evaluated using both Sirius red staining (under polarized light) and immunofluorescence assay. Results: Normotensive controls had less total and type III collagen in respect with hypertensive patients. Fibronectin and TGF-β1 tunica media content was significantly greater in essential hypertensive patients, compared with normotensive controls, while laminin and emilin-1 tunica media content was lesser in essential hypertensive patients, compared with normotensive controls. A significant correlation was observed between fibronectin tunica media content and media to lumen ratio. Conclusions: Our results indicate that, in small resistance arteries of patients with essential hypertension, a relevant fibrosis may be detected; fibronectin and TGF-β1 tunica media content is increased, while laminin and emilin-1 content is decreased; these changes might be involved in the development of small resistance artery remodeling in humans.
Additional file 1 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
Creators: name: Fu, Ning
name: Ji, Meiyuan
name: Rouard, Mathieu
name: Yan, Hai-Fei
name: Ge, Xue-Jun
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Table S1. Classification and species list of Musaceae.
Random Euclidean matching problems in one dimension
Creators: name: Caracciolo, Sergio
name: D'Achille, Matteo
name: Sicuro, Gabriele
Publisher: name: arXiv
Year: 2017
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: We discuss the optimal matching solution for both the assignment problem and the matching problem in one dimension for a large class of convex cost functions. We consider the problem in a compact set with the topology both of the interval and of the circumference. Afterwards, we assume the points' positions to be random variables identically and independently distributed on the considered domain. We analytically obtain the average optimal cost in the asymptotic regime of very large number of points $N$ and some correlation functions for a power-law type cost function in the form $c(z)=z^p$, both in the $p>1$ case and in the $p<0$ case. The scaling of the optimal mean cost with the number of points is $N^{-\frac{p}{2}}$ for the assignment and $N^{-p}$ for the matching when $p>1$, whereas in both cases it is a constant when $p<0$. Finally, our predictions are compared with the results of numerical simulations.
description: 21 pages
Memories of the War - Thomas Hall
Creators: name: Project Team, Their Finest Hour
Publisher: name: University of Oxford
Year: 2024
Subjects: classificationCode: 430304
subject: British history
classificationCode: 430308
subject: European history (excl. British, classical Greek and Roman)
classificationCode: 430316
subject: International history

description: Thomas Hall joined the TA in February 34: Second Monmouthshire Regiment. 9/10 siblings all joined the same units, eventually moving elsewhere. He trained in Northern Ireland. He was in Norway protecting a site when he was wounded and then evacuated back to the main naval base. Short recovery then volunteered for the newly formed commandos (June 1940). He also trained in Dartmouth, Winchester and North Wales. At this time, the siblings had separated, joining different factions of the army such as TA and Ammunitions.He joined the Pin Pick range, heading over to France. Then trained for the North African invasion. He fought in North Africa until April 43. Whilst on a convoy over the med sea, he witnessed a ship (HMT Rohna) sink. Over 1,000 US personnel were killed.In the last week of January 1945, there were 500-600 people hand-to-hand fighting in bunkers, where a comrade of his (Lt. George Knowland) defended his position by throwing hand grenades and a two-inch mortar from his hip. The Japanese were purposely calling 'Tommy Tommy I'm injured " to get friends to come. After it was over, they found over 500 Japanese dead. One of his youngest siblings died in September 1944. One sibling was taken into a Japanese war camp where they were held for 3.5 years.
New insights into the statistical properties of $M$-estimators
Creators: name: Draskovic, Gordana
name: Pascal, Frederic
Publisher: name: arXiv
Year: 2017
Subjects: subject: Methodology (stat.ME)
subject: FOS: Computer and information sciences

description: This paper proposes an original approach to better understanding the behavior of robust scatter matrix $M$-estimators. Scatter matrices are of particular interest for many signal processing applications since the resulting performance strongly relies on the quality of the matrix estimation. In this context, $M$-estimators appear as very interesting candidates, mainly due to their flexibility to the statistical model and their robustness to outliers and/or missing data. However, the behavior of such estimators still remains unclear and not well understood since they are described by fixed-point equations that make their statistical analysis very difficult. To fill this gap, the main contribution of this work is to prove that these estimators distribution is more accurately described by a Wishart distribution than by the classical asymptotical Gaussian approximation. To that end, we propose a new `Gaussian-core' representation for Complex Elliptically Symmetric (CES) distributions and we analyze the proximity between $M$-estimators and a Gaussian-based Sample Covariance Matrix (SCM), unobservable in practice and playing only a theoretical role. To confirm our claims we also provide results for a widely used function of $M$-estimators, the Mahalanobis distance. Finally, Monte Carlo simulations for various scenarios are presented to validate theoretical results.
title: 01_1999
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
Simpson et al., (2018). Ageing and Mental Health. Supplementary Methodology
Creators: name: Simpson, Ian
name: 2. Cristina Gabriela Dumitrache
Publisher: name: figshare
Year: 2018
Subjects: subject: 170102 Developmental Psychology and Ageing
subject: FOS: Psychology
subject: 170204 Linguistic Processes (incl. Speech Production and Comprehension)
subject: 111714 Mental Health
subject: FOS: Health sciences

description: This file contains supplementary methodology for the following article:
Simpson, I. C., Dumitrache, C, G., & Calet, N. (2018). Mental health symptoms and verbal fluency in elderly people: Evidence from the Spanish Longitudinal study of aging. Aging & Mental Health. doi: 10.1080/13607863.2018.1448969
jacobi-method-intuitive (1).pdf
Creators: name: Guill, Russ
Publisher: name: figshare
Year: 2018
Subjects: subject: 10301 Numerical Analysis
subject: FOS: Mathematics
subject: 10399 Numerical and Computational Mathematics not elsewhere classified

description: Jacobi method intuitive, Gauss-Seidel method intuitive
Additional file 13 of PM2.5 promotes NSCLC carcinogenesis through translationally and transcriptionally activating DLAT-mediated glycolysis reprograming
Creators: name: Chen, Qianqian
name: Wang, Yiling
name: Yang, Lin
name: Sun, Liyuan
name: Wen, Yuxin
name: Huang, Yongyi
name: Gao, Kaiping
name: Yang, Wenhan
name: Bai, Feng
name: Ling, Lijuan
name: Zhou, Zizi
name: Zhang, Xiaoming
name: Xiong, Juan
name: Zhai, Rihong
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 13: Table S5. Enrichment results of differentially expressed mRNAs by KEGG analysis.
FRONTSH1P_D1.4 Data Management Plan & Open Research Data Pilot
Creators: name: Maszczyk, Kamil
Publisher: name: FRONTSH1P Project
Year: 2022

description: Working in line with the principles of open access to research data and publications generated through H2020 programmes, the FRONTSH1P project participates in the Open Research Data Pilot (ORDP) carried out by the European Commission.The requirements that should be adhered to ensure open access are the following:• Develop (and keep up-to-date) a Data Management Plan (DMP);• Deposit the data in a research data repository;• Ensure third parties can freely access, mine, exploit, reproduce and disseminate this data;• Provide related information and identify (or provide) the tools needed to use the raw data to validate research results.This deliverable aims to describe the processes followed in the FRONTSH1P project regarding the development of a Data Management Plan that is designed for the activities of mapping, analysis, consultation and involvement of stakeholders.The processes followed in the FRONTSH1P project to collect, manage, and deposit the generated data during the first six months of the project's lifetime are also described in this deliverable. The holistic DMP set in the Description of Action based on partners’ inputs collected in WP1 (Task 1.4) will ensure openness, accessibility to beneficiaries of all data generated during the project and reusability after its completion.Under the requirements and guidelines of Horizon 2020 funded projects, projects must focus from an early stage on how research data will be stored and validate the scientific outputs. As several types of datasets will be produced, data sharing and communication between the partners will be established via DMP and the platform designed specifically for this purpose. According to the data mapping scheme, data and metadata generated from various sources will be combined into meaningful and valuable information. Maximum capabilities of data sharing and metadata usage will be achieved, considering data security, privacy, and General Data Protection Regulation compliance. Finally, data produced throughout FRONTSH1P will be shared among open European research databases.
Emission of Linearly Polarized Single Photons from Quantum Dots Contained in Nonpolar, Semipolar, and Polar Sections of Pencil-Like InGaN/GaN Nanowires
Creators: name: Gacevic, Z.
name: Holmes, M.
name: Chernysheva, E.
name: Muller, M.
name: Torres-Pardo, A.
name: Veit, P.
name: Bertram, F.
name: Christen, J.
name: Gonzalez-Calbet, J. M.
name: Arakawa, Y.
name: Calleja, E.
name: Lazic, S.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: A pencil-like morphology of homoepitaxially grown GaN nanowires is exploited for the fabrication of thin conformal intrawire InGaN nanoshells which host quantum dots in nonpolar, semipolar and polar crystal regions. All three quantum dot types exhibit single photon emission with narrow emission line widths and high degrees of linear optical polarization. The host crystal region strongly affects both single photon wavelength and emission lifetime, reaching subnanosecond time scales for the non- and semipolar quantum dots. Localization sites in the InGaN potential landscape, most likely induced by indium fluctuations across the InGaN nanoshell, are identified as the driving mechanism for the single photon emission. The hereby reported pencil-like InGaN nanoshell is the first single nanostructure able to host all three types of single photon sources and is, thus, a promising building block for tunable quantum light devices integrated into future photonic circuits.
description: 14 pages, 7 figures
In vitro antibacterial, antioxidant and toxicity profile of silver nanoparticles green-synthesized and characterized from aqueous extract of a spice blend formulation
Creators: name: Otunola, Gloria Aderonke
name: Afolayan, Anthony Jide
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: Inorganic Chemistry

description: Here we report the synthesis, characterization and biological properties of silver nanoparticles (AgNPs) using the extract from a spice blend. AgNPs were prepared using 0.1 mmol/L AgNO3 solution and aqueous extract from a spice blend of garlic, ginger and cayenne pepper. The nanoparticles were characterized using ultraviolet–visible (UV-vis) spectroscopy, scanning and transmission electron microscopy (SEM and TEM), energy dispersive X-ray (EDX), X-ray diffraction (XRD) and Fourier transform infrared spectroscopy (FTIR). The AgNPs formed within an hour of the reaction with colour change from yellow to dark brown and maximum absorbance at 420 nm in the UV-vis spectrum. SEM revealed well dispersed particles with little agglomeration, and the presence of elemental silver was confirmed by EDX. TEM confirmed the formation of poly-dispersed, spherical-shaped NPs with size range of 6–28 nm. FTIR showed that amine, protein, phenolic, aromatic and alkyne groups contributed to AgNPs synthesis, and XRD confirmed their crystalline and face-centred cubic nature. Both Gram-negative and Gram-positive bacteria were susceptible to the spice blend AgNPs with MIC of 0.0625 at 62.5 µg/mL. The AgNPs exhibited greater inhibition on DPPH radical with IC50
Additional file 2 of Transcriptome analysis reveals underlying immune response mechanism of fungal (Penicillium oxalicum) disease in Gastrodia elata Bl. f. glauca S. chow (Orchidaceae)
Creators: name: Wang, Yanhua
name: Gao, Yugang
name: Zang, Pu
name: Xu, Yue
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 2: Table S2. GO terms enrichment of DEGs. KS: Kolmogorov-Smirnov test (p<0.01).
Roaring Bitmaps: Implementation of an Optimized Software Library
Creators: name: Lemire, Daniel
name: Kaser, Owen
name: Kurz, Nathan
name: Deri, Luca
name: O'Hara, Chris
name: Saint-Jacques, François
name: Ssi-Yan-Kai, Gregory
Publisher: name: arXiv
Year: 2017
Subjects: subject: Databases (cs.DB)
subject: FOS: Computer and information sciences

description: Compressed bitmap indexes are used in systems such as Git or Oracle to accelerate queries. They represent sets and often support operations such as unions, intersections, differences, and symmetric differences. Several important systems such as Elasticsearch, Apache Spark, Netflix's Atlas, LinkedIn's Pinot, Metamarkets' Druid, Pilosa, Apache Hive, Apache Tez, Microsoft Visual Studio Team Services and Apache Kylin rely on a specific type of compressed bitmap index called Roaring. We present an optimized software library written in C implementing Roaring bitmaps: CRoaring. It benefits from several algorithms designed for the single-instruction-multiple-data (SIMD) instructions available on commodity processors. In particular, we present vectorized algorithms to compute the intersection, union, difference and symmetric difference between arrays. We benchmark the library against a wide range of competitive alternatives, identifying weaknesses and strengths in our software. Our work is available under a liberal open-source license.
Additional file 2 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
Creators: name: Fu, Ning
name: Ji, Meiyuan
name: Rouard, Mathieu
name: Yan, Hai-Fei
name: Ge, Xue-Jun
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2: Table S2. List of genes present in the plastomes of Musaceae species generated in this study.
Joint Syntacto-Discourse Parsing and the Syntacto-Discourse Treebank
Creators: name: Zhao, Kai
name: Huang, Liang
Publisher: name: arXiv
Year: 2017
Subjects: subject: Computation and Language (cs.CL)
subject: FOS: Computer and information sciences

description: Discourse parsing has long been treated as a stand-alone problem independent from constituency or dependency parsing. Most attempts at this problem are pipelined rather than end-to-end, sophisticated, and not self-contained: they assume gold-standard text segmentations (Elementary Discourse Units), and use external parsers for syntactic features. In this paper we propose the first end-to-end discourse parser that jointly parses in both syntax and discourse levels, as well as the first syntacto-discourse treebank by integrating the Penn Treebank with the RST Treebank. Built upon our recent span-based constituency parser, this joint syntacto-discourse parser requires no preprocessing whatsoever (such as segmentation or feature extraction), achieves the state-of-the-art end-to-end discourse parsing accuracy.
description: Accepted at EMNLP 2017
Additional file 3 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
Creators: name: Fu, Ning
name: Ji, Meiyuan
name: Rouard, Mathieu
name: Yan, Hai-Fei
name: Ge, Xue-Jun
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3: Table S3. The indexes of the codon usage bias in Musaceae plastomes.
A Framework for Directional and Higher-Order Reconstruction in Photoacoustic Tomography
Creators: name: Boink, Yoeri E.
name: Lagerwerf, Marinus J.
name: Steenbergen, Wiendelt
name: van Gils, Stephan A.
name: Manohar, Srirang
name: Brune, Christoph
Publisher: name: arXiv
Year: 2017
Subjects: subject: Numerical Analysis (math.NA)
subject: FOS: Mathematics

description: Photoacoustic tomography is a hybrid imaging technique that combines high optical tissue contrast with high ultrasound resolution. Direct reconstruction methods such as filtered backprojection, time reversal and least squares suffer from curved line artefacts and blurring, especially in case of limited angles or strong noise. In recent years, there has been great interest in regularised iterative methods. These methods employ prior knowledge on the image to provide higher quality reconstructions. However, easy comparisons between regularisers and their properties are limited, since many tomography implementations heavily rely on the specific regulariser chosen. To overcome this bottleneck, we present a modular reconstruction framework for photoacoustic tomography. It enables easy comparisons between regularisers with different properties, e.g. nonlinear, higher-order or directional. We solve the underlying minimisation problem with an efficient first-order primal-dual algorithm. Convergence rates are optimised by choosing an operator dependent preconditioning strategy. Our reconstruction methods are tested on challenging 2D synthetic and experimental data sets. They outperform direct reconstruction approaches for strong noise levels and limited angle measurements, offering immediate benefits in terms of acquisition time and quality. This work provides a basic platform for the investigation of future advanced regularisation methods in photoacoustic tomography.
description: submitted to "Physics in Medicine and Biology". Changes from v1 to v2: regularisation with directional wavelet has been added; new experimental tests have been included
Ozone oxidation of β-lactam antibiotic molecules and toxicity decrease in aqueous solution and industrial wastewaters heavily contaminated
Creators: name: Thaís Helena De Oliveira Norte
name: Marcelino, Rafaela Brito Portela
name: Medeiros, Fernando Henrique Alves
name: Moreira, Renata Pereira Lopes
name: Amorim, Camila Costa
name: Lago, Rochel Montero
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: In this work, ozone oxidation of the antibiotics amoxicillin (AMX), cephalexin, and ceftriaxone was investigated in different samples: (i) aqueous solutions (100 mg L−1), (ii) an industrial wastewater containing AMX at 125 mg L−1 (chemical oxygen demand 6000 mg O2 L−1), and (iii) a heavily contaminated industrial wastewater containing the antibiotics at a total concentration of 320 mg L−1. High performance liquid chromatography, molecular absorption spectrophotometry in the ultraviolet/visible region, and total organic carbon measurements showed that ozonation of antibiotics solutions led to removal higher than 95% with 10–20% mineralization. Industrial wastewater also showed very good efficiency for antibiotic removal (80–98%) after ozonation. Moreover, Microtox® test showed 86% toxicity reduction for the industrial wastewater.
MagicalRsq: Machine-learning-based genotype imputation quality calibration
Creators: name: Knowles, Michael R.
name: Wen, Jia
name: Pace, Rhonda G.
name: Liu, Weifang
name: Blackman, Scott M.
name: Yang, Yingxi
name: Rosen, Jonathan D.
name: Raffield, Laura M.
name: Sun, Quan
name: Chen, Jiawen
name: Wright, Fred A.
name: Schrider, Daniel R.
name: Bamshad, Michael J.
name: Cutting, Garry R.
name: Fuchsberger, Christian
name: Li, Yun
name: Zhou, Yi-Hui
name: Gibson, Ronald L.
name: Jiang, Min-Zhi
Publisher: name: Elsevier
Year: 2022

description:
Whole-genome sequencing (WGS) is the gold standard for fully characterizing genetic variation but is still prohibitively expensive for large samples. To reduce costs, many studies sequence only a subset of individuals or genomic regions, and genotype imputation is used to infer genotypes for the remaining individuals or regions without sequencing data. However, not all variants can be well imputed, and the current state-of-the-art imputation quality metric, denoted as standard Rsq, is poorly calibrated for lower-frequency variants. Here, we propose MagicalRsq, a machine-learning-based method that integrates variant-level imputation and population genetics statistics, to provide a better calibrated imputation quality metric. Leveraging WGS data from the Cystic Fibrosis Genome Project (CFGP), and whole-exome sequence data from UK BioBank (UKB), we performed comprehensive experiments to evaluate the performance of MagicalRsq compared to standard Rsq for partially sequenced studies. We found that MagicalRsq aligns better with true R2 than standard Rsq in almost every situation evaluated, for both European and African ancestry samples. For example, when applying models trained from 1,992 CFGP sequenced samples to an independent 3,103 samples with no sequencing but TOPMed imputation from array genotypes, MagicalRsq, compared to standard Rsq, achieved net gains of 1.4 million rare, 117k low-frequency, and 18k common variants, where net gains were gained numbers of correctly distinguished variants by MagicalRsq over standard Rsq. MagicalRsq can serve as an improved post-imputation quality metric and will benefit downstream analysis by better distinguishing well-imputed variants from those poorly imputed. MagicalRsq is freely available on GitHub.
Simultaneous Assessment of Cardiac Inflammation and Extracellular Matrix Remodeling After Myocardial Infarction
Creators: name: Ramos, Isabel
Publisher: name: figshare
Year: 2018
Subjects: subject: 60102 Bioinformatics
subject: FOS: Computer and information sciences
subject: Cardiology
subject: Medicine

description: MR DICOM data is provided.
Additional file 6 of Transcriptome analysis reveals underlying immune response mechanism of fungal (Penicillium oxalicum) disease in Gastrodia elata Bl. f. glauca S. chow (Orchidaceae)
Creators: name: Wang, Yanhua
name: Gao, Yugang
name: Zang, Pu
name: Xu, Yue
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 6: Table S6. Correlation statistics between biological replicate samples. It is revealed with Pearson′s correlation coefficient r. The closer r2 is to 1, the stronger the correlation between two groups.
Effects of Surface Integrity on the Mechanics of Ultra-Thin Films
Creators: name: Shaat, M.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Applied Physics (physics.app-ph)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: A detailed formulation for the effects of the surface integrity, i.e. surface topography, surface metallurgy, and surface mechanical properties, on the mechanics of ultra-thin films is proposed in the framework of linear elasticity. In this formulation, the ultra-thin film is modeled as a material bulk covered with two altered layers and two rough surfaces as distinct phases. Two versions of the proposed formulation are developed. In the first version, the governing equations are obtained depending on the general form of the surface topography. In the second version, the governing equations are reformulated utilizing the average parameters of the surface topography. In the proposed formulation, measures are incorporated to account for the effects of the surface topography, i.e. waviness and roughness, surface metallurgy, i.e. altered layer, and surface excess energy on the mechanics of ultra-thin films. A case study for the static bending of clamped-clamped ultra-thin films is analytically solved. A parametric study on the effects of the surface roughness, waviness, altered layers, and film size on the static bending of ultra-thin films is presented. In this study, new size-dependent behaviors are revealed where the mechanics of ultra-thin films can be significantly altered for the small variations in the surface integrity.
Additional file 1 of Prior pregnancy complications and maternal cardiovascular disease in young Korean women within 10 years after pregnancy
Creators: name: Cho, Geum Joon
name: Um, Ji Soo
name: Kim, Sa Jin
name: Han, Sung Won
name: Lee, Soo Bin
name: Oh, Min-Jeong
name: Shin, Jae Eun
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer

description: Additional file 1:Table S1. International classification of disease codes used in the analysis.
"Higgs" Factory at the Greek-Turkish Border
Creators: name: Çetin, Serkant Ali
name: Gazis, Evangelos N.
name: Işildak, Bora
name: İlday, Fatih Ömer
name: Kordas, Konstantinos
name: Petridou, Chariclia
name: Semertzidis, Yannis K.
name: Sultansoy, Saleh
name: Ünel, Gökhan
name: Zioutas, Konstantin
Publisher: name: arXiv
Year: 2017
Subjects: subject: Accelerator Physics (physics.acc-ph)
subject: FOS: Physical sciences

description: We would like to propose the construction of the photon collider based "Higgs factory" in the coming years at the Greek-Turkish border, starting from its test facility with a high energy photon beam. This proposal was among the contributions to the Open Symposium of the ESPG'12.
description: 6 pages, 2 figures, 1 table, contribution to the Open Symposium - European Strategy Preparatory Group, 2012, Krakow, Poland