cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
title: 01_1889
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
title: ADCO, Cinquième cartulaire de Saint-Étienne de Dijon (1664), Cart. 28 (G 132), 258 folios, f. 00292
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire

description: Cinquième cartulaire de Saint-Étienne de Dijon (1664), Archives départementales de la Côte-d'Or, Cart. 28 (G 132), 258 folios, f. 00292, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cinquième cartulaire de Saint-Étienne de Dijon (1664), Archives départementales de la Côte-d'Or, Cart. 28 (G 132), 258 folios, f. 00292, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
MOESM1 of Network modules uncover mechanisms of skeletal muscle dysfunction in COPD patients
Creators: name: Tényi, Ákos
name: Cano, Isaac
name: Marabita, Francesco
name: Narsis Kiani
name: Kalko, Susana
name: Barreiro, Esther
name: Atauri, Pedro
name: Cascante, Marta
name: Gomez-Cabrero, David
name: Roca, Josep
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Science Policy
subject: Plasma Physics
subject: Plant Biology

description: Additional file 1: Section 1. Expanded methods: TRAINING program, HotNet2 and parameters, Interactome construction. Section 2. Expanded results: Training induced adaptation, Impact of FFMI on disease effect modules, Impact of FFMI on training effect modules. Training effect differences between COPD and healthy. Gender effect on the transcriptomics profile. Figure S1. Overlap between nodes and edges in the interaction networks. Figure S2. Disease effect modules of the COPD subgroups. Figure S3. Training effect modules of the COPD subgroups. Figure S4. Difference between COPD and healthy training effects. Figure S5. Gender effect on the transcriptomics profile.
Exactly solvable model of two trapped quantum particles interacting via finite-range soft-core interactions
Creators: name: Kościk, Przemysław
name: Sowiński, Tomasz
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The exactly solvable model of two indistinguishable quantum particles (bosons or fermions) confined in a one-dimensional harmonic trap and interacting via finite-range soft-core interaction is presented and many properties of the system are examined. Particularly, it is shown that independently on the potential range, in the strong interaction limit bosonic and fermionic solutions become degenerate. For sufficiently large ranges a specific crystallization appears in the system. The results are compared to predictions of the celebrated Busch {\it et al.} model and those obtained in the Tonks-Girardeau limit. The assumed inter-particle potential is very similar to the potential between ultra-cold dressed Rydberg atoms. Therefore, the model can be examined experimentally.
description: 12 pages, 6 figures
Concurrent intersection point of magnetization and magneto-conductivity curves in strongly fluctuating superconductors
Creators: name: Chi, Cheng
name: Jiang, Xujiang
name: Wang, Jiangfan
name: Li, Dingping
name: Rosenstein, Baruch
Publisher: name: arXiv
Year: 2017
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: The thermal fluctuations contribution to magnetization and magneto-conductivity of type II layered superconductor is calculated in the framework of Lawrence-Doniach model. For numerous high temperature cuprate superconductors, it was discovered that the magnetization dependence on temperature in wide range of fields exhibits an intersection point at a temperature slightly below $T_{c}$. We notice a similar intersection point of the magneto-conductivity curves at the approximate same temperature. The phenomenon is explained by strong (non-gaussian) thermal fluctuations with interactions treated using a self-consistent theory. All higher Landau levels should be included. Dimensionality of the fluctuations is defined and the 2D-3D dimensional crossover is the key for the existence of intersection points.
description: 12 pages, 9 figures
Skilling Up: Using Canvas to Teach Research Data Management
Creators: name: Muilenburg, Jennifer
Publisher: name: Zenodo
Year: 2019
Subjects: instruction
data management

description: Many colleges and universities struggle with how to present research data management skills to students who aren’t getting the information as part of their formal education. Instruction can vary widely, and might include content on file and data management, technical organizational skills, best formats and practices for research reproducibility and long-term preservation, as well as wayfinding for local campus resources. This presentation will detail one university’s experience in developing an online class to teach research data management skills to upper-level students and new campus researchers. From the road to development, to the changing structure of the class over the past three years, we’ll talk about who took the class, how participation has varied, reviews and comments, and what next steps for the class will be.
Deriving the contribution of blazars to the Fermi-LAT Extragalactic $γ$-ray background at $E>10$ GeV with efficiency corrections and photon statistics
Creators: name: Di Mauro, Mattia
name: Manconi, Silvia
name: Zechlin, Hannes-S.
name: Ajello, Marco
name: Charles, Eric
name: Donato, Fiorenza
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: The Fermi Large Area Telescope (LAT) Collaboration has recently released the Third Catalog of Hard Fermi-LAT Sources (3FHL), which contains 1556 sources detected above 10 GeV with seven years of Pass 8 data. We investigate the source count distribution of 3FHL sources at Galactic latitudes $|b|>20^{\circ}$, where the sources are mostly blazars. We use two complementary techniques: 1) a source-detection efficiency correction method and 2) an analysis of pixel photon count statistics with the 1-point probability distribution function (1pPDF). With the first method, using realistic Monte Carlo simulations of the $γ$-ray sky, we calculate the efficiency of the LAT to detect point sources. This enables us to find the intrinsic source count distribution at photon fluxes down to $7.5\times10^{-12}$ ph cm$^{-2}$s$^{-1}$. With this method we detect a flux break at $(3.5\pm0.4) \times 10^{-11} \mathrm{ph}\,\mathrm{cm}^{-2}\mathrm{s}^{-1}$ with a significance of at least $5.4 σ$. The power-law indexes of the source count distribution above and below the break are $2.09\pm0.04$ and $1.07\pm0.27$, respectively. This result is confirmed with the 1pPDF method, which has a sensitivity reach of $\sim10^{-11}$ ph cm$^{-2}$s$^{-1}$. Integrating the derived source count distribution above the sensitivity of our analysis, we find that $(42\pm8)\%$ of the extragalactic $γ$-ray background originates from blazars.
description: 13 pages, 13 figures, 3 table. 2018 ApJ 856 106
COMPAS: A coastal unstructured ocean model using Voronoi meshes
Creators: name: Rizwi, Farhan
Publisher: name: Zenodo
Year: 2024
Subjects: Other
Software
Numerical modelling; unstructured mesh

description: There is a growing trend towards unstructured mesh modelling for coastal zones. These meshes are generally coastline following with a resolution function, typically, of distance from coast and/or bathymetry weighted. The variable resolution allows for very fine-scale structure at the areas of interest and expanding out to coarse resolution allowing for a single direct nesting in larger scale global models. However, generating high quality meshes is a non-trivial task, often requiring several iterations to balance the desired resolution and run-time ratios.
In this poster, I will introduce our unstructured mesh hydrodynamic model COMPAS (Coastal Ocean Marine Prediction Across Scales), within EMS (Environmental Modelling Suite), which operates on the dual (voronoi) of the triangulation, outline its inline mesh generation using JIGSAW and relocatable capabilities. This allows users to deploy models very quickly with only a minimal set of inputs, the package handles the automated
bootstrapping of the full parameter file.

COMPAS also includes a mass-conserving transport model, allowing for greatly reduced simulation times when coupled with ecological ad sediment processes, and particle tracking.
MOESM13 of A robust qualitative transcriptional signature for the correct pathological diagnosis of gastric cancer
Creators: name: Yan, Haidan
name: Li, Meifeng
name: Cao, Longlong
name: Chen, Haifeng
name: Lai, Hungming
name: Guan, Qingzhou
name: Chen, Huxing
name: Zhou, Wenbin
name: Zheng, Baotong
name: Guo, Zheng
name: Zheng, Chaohui
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 13: Table S8. The summary of genes in the signature.
November 23-29, 2020 Residence TAZ to Service TAZ
Creators: name: Molina, Ciro Jaramillo
name: Cuervo, Daniel
name: Pinilla, Luis Fernando
name: CUERVO, Luis Gabriel
name: Martínez-Herrera, Eliana
name: Hatcher-Roberts, Janet
name: Méndez, Jorge Gallego
Publisher: name: OSF
Year: 2023
Subjects: City Planning
Health Inequality Monitoring
Health Services Accessibility
Residence Characteristics
Spatial Analysis
Urban Health

description: Travel time from TAZ of residence (origin) to Service TAZ (destination), measured for November 23-29, 2020
Sodium abundances of AGB and RGB stars in Galactic globular clusters II. Analysis and results of NGC 104, NGC 6121 and NGC 6809
Creators: name: Wang, Y.
name: Primas, F.
name: Charbonnel, C.
name: Van der Swaelmen, M.
name: Bono, G.
name: Chantereau, W.
name: Zhao, G.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We analyzed the high-resolution spectra of a large sample of AGB and RGB stars in the Galactic globular clusters (GCs) NGC 104, NGC 6121, and NGC 6809 obtained with FLAMES/GIRAFFE at ESO/VLT, and determined their Na abundances. This is the first time that the AGB stars in NGC 6809 are targeted. Moreover, we reanalyzed with the same method the data archive for NGC 6752. To investigate the dependence of AGB Na abundance dispersion on GC parameters, we compared the AGB [Na/H] distributions we obtained (including NGC 2808 presented in the first paper of this series) with literature data for four other GCs, i.e., a total of nine GCs, covering a wide range of GC parameters. We find that NGC 104 and NGC 6809 have comparable AGB and RGB Na abundance distributions revealed by the K-S test, while NGC 6121 shows a lack of very Na-rich AGB star. By analyzing all the nine GCs, the Na abundances and multiple populations of AGB stars show a complex picture. In some GCs, AGB stars have similar Na abundances and/or second-population fractions as their RGB counterparts, while some GCs do not have Na-rich second-population AGB star, and various cases exist between the two extremes. In addition, the fitted relations between fractions of AGB second population and GC global parameters show that AGB second-population fraction slightly anticorrelates with GC central concentration, while no robust dependency can be confirmed with other GC parameters. Current data roughly support the prediction of FRMS scenario. However, considering the weak observational and theoretical trends where scatter and exceptions exist, the fraction of second-population AGB stars can be affected by more than one or two factors, and may even be a result of stochasticity.
description: 17 pages, 11 figures, accepted for publication in Astronomy and Astrophysics
Additional file 3: of SMS text messaging to measure working time: the design of a time use study among general practitioners
Creators: name: DaniĂŤl Van Hassel
name: Lud Van Der Velden
name: Dinny De Bakker
name: Batenburg, Ronald
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: Biotechnology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Calculating the working hours based on SMS. (DOCX 16 kb)
July 6-12 2020 Residence TAZ to Service TAZ
Creators: name: Pinilla, Luis Fernando
name: Cuervo, Daniel
name: Molina, Ciro Jaramillo
name: Méndez, Jorge Gallego
name: CUERVO, Luis Gabriel
name: Hatcher-Roberts, Janet
name: Martínez-Herrera, Eliana
Publisher: name: OSF
Year: 2023
Subjects: City Planning
Health Inequality Monitoring
Health Services Accessibility
Residence Characteristics
Spatial Analysis
Urban Health

description: July 6-12, 2020, Travel times from Residence TAZ (Origin) to Service TAZ (Destination)
title: ADCO, Cartulaire de l'office de la Porte de l'abbaye de Cîteaux, Registrum possessionum porte Cistercii (début XVe siècle), Cart. 172 (11 H 69), 115 folios, f. 0161
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: cartulaire
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Cartulaire de l'office de la Porte de l'abbaye de Cîteaux, Registrum possessionum porte Cistercii (début XVe siècle), Archives départementales de la Côte-d'Or, Cart. 172 (11 H 69), 115 folios, f. 0161, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de l'office de la Porte de l'abbaye de Cîteaux, Registrum possessionum porte Cistercii (début XVe siècle), Archives départementales de la Côte-d'Or, Cart. 172 (11 H 69), 115 folios, f. 0161, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Trajectories of Agency and Communion in Life Narratives Across Middle to Old Adulthood: Implications for Psychological and Developmental Outcomes
Creators: name: Reischer, Hollen N.
name: McAdams, Dan P.
name: Lam, Phoebe
name: Ture, Sebnem
Publisher: name: OSF Registries
Year: 2024
Subjects: subject: Clinical Psychology
subject: Personality and Social Contexts
subject: Developmental Psychology
subject: Social and Behavioral Sciences
subject: Psychology
subject: FOS: Psychology
subject: #narrative identity
subject: agency
subject: communion
subject: life story
subject: multilevel modelling
subject: personality development
subject: psychological wellbeing

description: Agency and communion (Bakan, 1966; Abele & Wojciszke, 2018) are motivational narrative themes, with the former encompassing the extent to which an individual expresses their ability to maintain control over their experiences, while the latter relates to the extent to which they experience meaningful connections with others. This study represents the first exploration of agency and communion trajectories within the framework of aging and adult development. The study of midlife and late midlife has often been overlooked in the field of adult development and aging (Lachman, 2015). This study addresses this gap, and it is situated within the fields of personality development and narrative identity. Our purpose is to understand the specific trajectories of agency and communion across late midlife and explore how they might have implications for psychological health.
Natural borneol sensitizes human glioma cells to cisplatin-induced apoptosis by triggering ROS-mediated oxidative damage and regulation of MAPKs and PI3K/AKT pathway
Creators: name: Cao, Wen-qiang
name: Zhai, Xiao-qian
name: Ma, Ji-wei
name: Fu, Xue-qi
name: Zhao, Bai-song
name: Zhang, Pu
name: Fu, Xiao-yan
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Neuroscience
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Cisplatin-based chemotherapy was widely used in treating human malignancies. However, side effects and chemoresistance remains the major obstacle. To verify whether natural borneol (NB) can enhance cisplatin-induced glioma cell apoptosis and explore the mechanism. Cytotoxicity of cisplatin and/or NB towards U251 and U87 cells were determined with the MTT assay. Cells were treated with 0.25–80 μg/mL cisplatin and/or 5–80 μM NB for 48 h. The effects of NB and/or cisplatin on apoptosis and cell cycle distribution were quantified by flow cytometric analysis. Protein expression was detected by western blotting. ROS generation was conducted by measuring and visualising an oxidation-sensitive fluorescein DCFH-DA. NB synergistically enhanced the anticancer efficacy of cisplatin in human glioma cells. Co-treatment of 40 μg/mL NB and 40 μg/mL cisplatin significantly inhibited U251 cell viability from 100% to 28.2% and increased the sub-G1 population from 1.4% to 59.3%. Further detection revealed that NB enhanced cisplatin-induced apoptosis by activating caspases and triggering reactive oxygen species (ROS) overproduction as evidenced by the enhancement of green fluorescence intensity from 265% to 645%. ROS-mediated DNA damage was observed as reflected by the activation of ATM/ATR, p53 and histone. Moreover, MAPKs and PI3K/AKT pathways also contributed to co-treatment-induced U251 cell growth inhibition. ROS inhibition by antioxidants effectively improved MAPKs and PI3K/AKT functions and cell viability, indicating that NB enhanced cisplatin-induced cell growth in a ROS-dependent manner. Natural borneol had the potential to sensitise human glioma cells to cisplatin-induced apoptosis with potential application in the clinic.
A Scoping Review of the Use of Evidence Synthesis Methods in a Pedagogical Context to Teach Information, Scientific, or Research Literacy in Higher Education Settings
Creators: name: Gainey, Melanie
name: Young, Sarah
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Education
subject: Education
subject: Evidence Synthesis
subject: Information Literacy
subject: Literature Reviews
subject: Pedagogy
subject: Research Literacy
subject: Scientific Literacy
subject: Scoping Reviews
subject: Systematic Reviews

description: This is a preregistration of the protocol for A Scoping Review of the Use of Evidence Synthesis Methods in a Pedagogical Context to Teach Information, Scientific, or Research Literacy in Higher Education Settings. This study aims to describe how evidence synthesis methods have been used with the intent of teaching information, scientific, or research literacy in the classroom and how it compares to the use of traditional literature review methods in this context.
Probing short-range correlations in asymmetric nuclei with quasi-free pair knockout reactions
Creators: name: Stevens, Sam
name: Ryckebusch, Jan
name: Cosyn, Wim
name: Waets, Andreas
Publisher: name: arXiv
Year: 2017
Subjects: subject: Nuclear Theory (nucl-th)
subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: Short-range correlations (SRC) in asymmetric nuclei with an unusual neutron-to-proton ratio can be studied with quasi-free two-nucleon knockout processes following the collision between accelerated ions and a proton target. We derive an approximate factorized cross section for those SRC-driven $p(A,p^{\prime} N_1 N_2)$ reactions. Our reaction model hinges on the factorization properties of SRC-driven $A(e, e^\prime N_1 N_2)$ reactions for which strong indications are found in theory-experiment comparisons. In order to put our model to the test we compare its predictions with results of $^{12}\text{C}(p,p^{\prime} pn)$ measurements conducted at Brookhaven National Laboratory (BNL) and find a fair agreement. The model can also reproduce characteristic features of SRC-driven two-nucleon knockout reactions, like back-to-back emission of the correlated nucleons. We study the asymmetry dependence of nuclear SRC by providing predictions for the ratio of proton-proton to proton-neutron knockout cross sections for the carbon isotopes $^{9-15}$C thereby covering neutron excess values $(N-Z)/Z$ between -0.5 and +0.5.
description: 20 pages, 5 figures. Final version published in Physics Letters B, minor changes in the text
Additional file 7: Figure S5. of Nilotinib impairs skeletal myogenesis by increasing myoblast proliferation
Creators: name: Contreras, Osvaldo
name: Villarreal, Maximiliano
name: Brandan, Enrique
Publisher: name: figshare
Year: 2018
Subjects: Biochemistry
Medicine
Cell Biology
Molecular Biology
Pharmacology
Developmental Biology

description: Nilotinib induces myoblast proliferation and histone 3 phosphorylation. (A) Quantification of survival/proliferation using the MTT assay. C2C12 myoblast cultures were treated with different concentrations of Nilotinib in DM for 24 h. **P
Getting in Touch with Metadata: A DDI Subset for FAIR Metadata Production by Researchers
Creators: name: Aguiar Castro, João
name: Ribeiro, Cristina
name: Rodrigues, Joana
Publisher: name: Zenodo
Year: 2019
Subjects: DDI
FAIR
metadata
data documentation

description: In the scope of a project dealing with psychological adjustment of families at risk, it is foreseen the collection of different types of data, resulting from questionnaires, interviews and other observations. To minimize data loss and promote data sharing among project members there was the need to specify, as an integral part of a Data Management Plan, how data will be documented. Therefore, DDI was identified as the most suitable vocabulary to simplify the creation of FAIR metadata by the researchers. We describe the activities that led to the selection of the DDI elements that best fit the project metadata requirements and are likelier to be adopted by researchers inexperienced with metadata. Our first practical task was the publication of research data from a similar project using the ICPSR data deposit template to filter essential elements. A second activity consisted in a data description focus group with project members to evaluate the proposed metadata elements. The use of DDI elements has the potential to ensure interoperability with data publication initiatives in the social sciences, while the selection of a minimal set of DDI elements makes data description a realistic activity from the researchers’ perspective.
Imaging correlations in heterodyne-detected spectra for quantum sensing
Creators: name: Pontin, A.
name: Lang, J. E.
name: Chowdhury, A.
name: Vezio, P.
name: Marino, F.
name: Morana, B.
name: Serra, E.
name: Marin, F.
name: Monteiro, T. S.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The extraordinary sensitivity of the output field of an optical cavity to small quantum-scale displacements has led to breakthroughs such as the first detection of gravitational waves \cite{LIGO,LIGODC} and of the motions of quantum ground-state cooled mechanical oscillators \cite{Teufel2011,Chan2011}. While heterodyne detection of the cavity field preserves asymmetries which provide a key signature that mechanical oscillators has attained the quantum regime, detection of a rotating quadrature of the light averages out important quantum correlations, yielding a weaker signal and lower sensitivity than homodyne detection. In turn, homodyning, detects a single optical quadrature, but loses the important quantum sideband asymmetries. In the present work we present and experimentally demonstrate a technique, involving judicious construction of the autocorrelators of the output current using filter functions, which can restore the lost correlations (whether classical or quantum), drastically augmenting the useful information extracted: the filtering adjusts for moderate errors in the locking phase of the local oscillator, allowing efficient single-shot measurement of hundreds of different field quadratures and rapid mapping of detailed features from a simple heterodyne trace. One may also control whether the correlations are recovered in isolation or interfere with the usual stationary heterodyne sidebands. In the latter case we obtain a spectrum of hybrid homodyne-heterodyne character, with motional sidebands of combined amplitudes comparable to homodyne. We term such recovery of lost heterodyne correlations with filter functions r-heterodyning: although investigated here in a thermal regime, its robustness and generality represents a promising new approach to sensing of quantum-scale displacements.
description: Phys.Rev.Lett., accepted
Additional file 1 of Stemness-related LncRNA pair signature for predicting therapy response in gastric cancer
Creators: name: Jiang, Quan
name: Chen, Hao
name: Tang, Zhaoqing
name: Sun, Jie
name: Ruan, Yuanyuan
name: Liu, Fenglin
name: Sun, Yihong
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Supplementary Figure 1 (sFigure 1). Study flowchart. Supplementary Figure 2 (sFigure 2) Stemness-related genes in TCGA-STAD datasets. (A) Comparisons of SRGs between tumor and normal tissues. (Kruskal-Wallis U test. *p < 0.05; **p < 0.01; ***p < 0.001) (B) Univariate Cox regression analysis revealed SRGs with prognosis-predictive value in TCGA cohort(p ≤ 0.05). Supplementary Figure 3 (sFigure 3). Establishment of the DEsrlncRNA-based signature by the Cox and Lasso regression algorithms. (A and B) Twenty-six out of 57 DEsrlncRNA pairs derived from the prior Cox regression analysis were collected to further conduct Lasso regression analysis. (C) Forest maps show the results of the univariate Cox regression analysis.
\emph{Ab initio} calculation of spin-orbit coupling for NV center in diamond exhibiting dynamic Jahn-Teller effect
Creators: name: Thiering, Gergő
name: Gali, Adam
Publisher: name: arXiv
Year: 2017
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Point defects in solids may realize solid state quantum bits. The spin-orbit coupling in these point defects plays a key role in the magneto-optical properties that determine the conditions of quantum bit operation. However, experimental data and methods do not directly yield this highly important data, particularly, for such complex systems where dynamic Jahn-Teller (DJT) effect damps the spin-orbit interaction. Here, we show for an exemplary quantum bit, nitrogen-vacancy (NV) center in diamond, that \emph{ab initio} supercell density functional theory provide quantitative prediction for the spin-orbit coupling damped by DJT. We show that DJT is responsible for the multiple intersystem crossing rates of NV center at cryogenic temperatures. Our results pave the way toward optimizing solid state quantum bits for quantum information processing and metrology applications.
description: 5 pages, 3 figures, 1 table
Additional file 2: of SMS text messaging to measure working time: the design of a time use study among general practitioners
Creators: name: DaniĂŤl Van Hassel
name: Lud Van Der Velden
name: Dinny De Bakker
name: Batenburg, Ronald
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Science Policy

description: Time sampling frame applied for sending activity messages to GPs, during one week. (DOCX 16 kb)
Scattering of decuplet baryons in chiral effective field theory
Creators: name: Haidenbauer, J.
name: Petschauer, S.
name: Kaiser, N.
name: Meißner, Ulf-G.
name: Weise, W.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: A formalism for treating the scattering of decuplet baryons in chiral effective field theory is developed. The minimal Lagrangian and potentials in leading-order SU(3) chiral effective field theory for the interactions of octet baryons ($B$) and decuplet baryons ($D$) for the transitions $BB\to BB$, $BB\leftrightarrow DB$, $DB\to DB$, $BB\leftrightarrow DD$, $DB\leftrightarrow DD$, and $DD\to DD$ are provided. As an application of the formalism we compare with results from lattice QCD simulations for $ΩΩ$ and $NΩ$ scattering. Implications of our results pertinent to the quest for dibaryons are discussed.
description: 26 pages, 6 figures; minor corrections in the text, references added
Discotic mesogens based on triphenylene-fused benzimidazole or perimidine: facile synthesis, mesomorphism, optical properties and self-assembly
Creators: name: Fan, Sheng-Yuan
name: Xu, Hong-Tian
name: Li, Qiang-Gen
name: Fang, Dong-Mei
name: Yu, Wen-Hao
name: Xiang, Shi-Kai
name: Hu, Ping
name: Zhao, Ke-Qing
name: Feng, Chun
name: Wang, Bi-Qin
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Physical Sciences not elsewhere classified
subject: Biotechnology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Chemical Sciences not elsewhere classified
subject: Ecology

description: Four new mesomorphic triphenylene-fused nitrogen-containing heterocyclic systems, including three benzimidazole and one perimidine derivatives with extended triphenylene core of different sizes are synthesised from the condensation reaction between aromatic diamines and our developed triphenylene dicarboxylic anhydrides. These discotic mesogens self-assemble into supramolecular columnar hexagonal mesophases with high clearing transition temperatures, demonstrating a strong tendency for π-stacking aggregation in the LC state owing to their good planar molecular structures. Four triphenylene-fused mesogens exhibit strong absorption bands in the range of 262 nm to 450 nm and corresponding emission bands between 468 nm and 615 nm, respectively. Both the experimental results and computational calculations show that the mesomorphic and electronic properties of four mesogens are strongly affected by the expansion of triphenylene core and the electronic nature of the nitrogenated benzimidazole or perimidine ring. Besides, these mesogens also possess higher HOMO energies and narrower HOMO-LUMO gaps than parent anhydride. Furthermore, the solution of TDPI or TDP in THF at a concentration as low as 0.45 wt % exhibited organogel phases due to strong intermolecular π-π interactions between the large aromatic cores. All these properties qualify this new type of discotic liquid crystals as potential applications as organic semiconductor materials and sensors.
What Looks Good with my Sofa: Multimodal Search Engine for Interior Design
Creators: name: Tautkute, Ivona
name: Możejko, Aleksandra
name: Stokowiec, Wojciech
name: Trzciński, Tomasz
name: Brocki, Łukasz
name: Marasek, Krzysztof
Publisher: name: arXiv
Year: 2017
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: In this paper, we propose a multi-modal search engine for interior design that combines visual and textual queries. The goal of our engine is to retrieve interior objects, e.g. furniture or wall clocks, that share visual and aesthetic similarities with the query. Our search engine allows the user to take a photo of a room and retrieve with a high recall a list of items identical or visually similar to those present in the photo. Additionally, it allows to return other items that aesthetically and stylistically fit well together. To achieve this goal, our system blends the results obtained using textual and visual modalities. Thanks to this blending strategy, we increase the average style similarity score of the retrieved items by 11%. Our work is implemented as a Web-based application and it is planned to be opened to the public.
description: FEDCSIS 5th Conference on Multimedia, Interaction, Design and Innovation (MIDI), 2017
ABCpy: A High-Performance Computing Perspective to Approximate Bayesian Computation
Creators: name: Dutta, Ritabrata
name: Schoengens, Marcel
name: Pacchiardi, Lorenzo
name: Ummadisingu, Avinash
name: Widmer, Nicole
name: Künzli, Pierre
name: Onnela, Jukka-Pekka
name: Mira, Antonietta
Publisher: name: arXiv
Year: 2017
Subjects: subject: Computation (stat.CO)
subject: FOS: Computer and information sciences

description: ABCpy is a highly modular scientific library for Approximate Bayesian Computation (ABC) written in Python. The main contribution of this paper is to document a software engineering effort that enables domain scientists to easily apply ABC to their research without being ABC experts; using ABCpy they can easily run large parallel simulations without much knowledge about parallelization. Further, ABCpy enables ABC experts to easily develop new inference schemes and evaluate them in a standardized environment and to extend the library with new algorithms. These benefits come mainly from the modularity of ABCpy. We give an overview of the design of ABCpy and provide a performance evaluation concentrating on parallelization. This points us towards the inherent imbalance in some of the ABC algorithms. We develop a dynamic scheduling MPI implementation to mitigate this issue and evaluate the various ABC algorithms according to their adaptability towards high-performance computing.
Charge symmetry breaking in light $Λ$ hypernuclei
Creators: name: Gal, Avraham
name: Gazda, Daniel
Publisher: name: arXiv
Year: 2017
Subjects: subject: Nuclear Theory (nucl-th)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: Charge symmetry breaking (CSB) is particularly strong in the A=4 mirror hypernuclei $_Λ^4$H--$_Λ^4$He. Recent four-body no-core shell model calculations that confront this CSB by introducing $Λ$-$Σ^0$ mixing to leading-order chiral effective field theory hyperon-nucleon potentials are reviewed, and a shell-model approach to CSB in p-shell $Λ$ hypernuclei is outlined.
description: presented by A. Gal at the 12th International Seminar on Nuclear Physics, Sant'Angelo d'Ischia, May 15-19 2017; prepared for J. Phys. Conf.; v2 -- slightly expanded version
Additional file 6: of Nilotinib impairs skeletal myogenesis by increasing myoblast proliferation
Creators: name: Contreras, Osvaldo
name: Villarreal, Maximiliano
name: Brandan, Enrique
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology

description: Supplementary methods. (DOCX 1691Â kb)
title: ADCO, Septième cartulaire de Saint-Étienne de Dijon (1661-1665), Cart. 29 (G 134), 996 folios, f. 0113
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire

description: Septième cartulaire de Saint-Étienne de Dijon (1661-1665), Archives départementales de la Côte-d'Or, Cart. 29 (G 134), 996 folios, f. 0113, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Septième cartulaire de Saint-Étienne de Dijon (1661-1665), Archives départementales de la Côte-d'Or, Cart. 29 (G 134), 996 folios, f. 0113, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
MOESM1 of A robust qualitative transcriptional signature for the correct pathological diagnosis of gastric cancer
Creators: name: Yan, Haidan
name: Li, Meifeng
name: Cao, Longlong
name: Chen, Haifeng
name: Lai, Hungming
name: Guan, Qingzhou
name: Chen, Huxing
name: Zhou, Wenbin
name: Zheng, Baotong
name: Guo, Zheng
name: Zheng, Chaohui
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Table S1. The baseline characteristics of seven GC patients.
title: ADCO, Grènetier de Cîteaux : comptes (1499-1503) (11 H 1173), f. 00192
Creators: name: de la Côte-d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2019
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: comptes

description: Grènetier de Cîteaux : comptes (1499-1503), Archives départementales de la Côte-d'Or, (11 H 1173). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Grènetier de Cîteaux : comptes (1499-1503), Archives départementales de la Côte-d'Or, (11 H 1173), f. 00192, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Ten Simple Rules for Researchers: Upskilling for a Rapidly Evolving Workforce
Creators: name: Gouda-vossos, Amany
Publisher: name: Zenodo
Year: 2024
Subjects: Training
Skills
Engagement
Workforce

description: Background
As we enter the fourth research paradigm, as evidenced by rapid advancements in the scientific methodology of data-intensive practices, upskilling the next generation of researchers is pivotal. Further, discipline-specific advancements highlight the importance of researchers acquiring new skills to meet evolving demands. Short-format training (SFT) provides a quick and efficient medium to meet these demands. An SFT refers to a non-formal workshop, short course, boot camp, or similar, that teaches skills and knowledge over a brief period. A study led by Williams (2023) called to make SFT more reliable, effective, inclusive, and career-spanning in the face of rapid technological changes.

Actions
Recommendations for effective SFT development were inspired by productive discussions at the Australian Research Data Commons (ARDC) Digital Research Skills Summit in 2023. The Skills Summit brought together researchers, learning designers, skills trainers, and librarians. These recommendations were curated into ten simple rules by the Skilled Workforce Development Team at ARDC.

Conclusion
Our ten simple rules provide a streamlined workflow to assist in developing SFT for researchers. These rules outline how to think about skills learning for researchers, plan training sessions, and efficiently maximise learning. We offer recommendations on how to design and develop learner-centered training programs, foster outreach, and connect with trainer communities. We then provide tips to manage and optimise training, and conclude with valuable insights on preparing for uncertainty and the importance of post-training operations and continued learning.
Capturing their "First" dataset: A graduate course to walk PhD students through the curation of their dissertation data
Creators: name: Sapp Nelson, Megan
name: Kong, Ningning (Nicole)
Publisher: name: Zenodo
Year: 2019
Subjects: instruction
data curation
data literacy

description: The data set accompanying theses is a valuable intellectual property asset, both from the viewpoint of the PhD student, who can procure employment and build publications and research grants from the work for years to come, and the university, which owns the data and has invested in the work. However, the data set has generally not been captured as a finished product in a similar manner to the published thesis. A course has been developed which walks PhD students through the process of identifying an archival data set, selecting a repository or long term storage location, creating metadata and documentation for the data package, and the deposit process. A pre- and post assessment has been designed to ascertain the level of data literacy the students gain through curating their own dataset. Principal Investigators for the projects have input into the repositories and metadata standards selected. The university thesis office was consulted as the course was developed, so that accurate procedures and practices are reflected throughout the course. This first of a kind class is open to students of any discipline at a Research-1 university. The resulting mixture of data types creates a unique course every time it is offered.
MOESM2 of A robust qualitative transcriptional signature for the correct pathological diagnosis of gastric cancer
Creators: name: Yan, Haidan
name: Li, Meifeng
name: Cao, Longlong
name: Chen, Haifeng
name: Lai, Hungming
name: Guan, Qingzhou
name: Chen, Huxing
name: Zhou, Wenbin
name: Zheng, Baotong
name: Guo, Zheng
name: Zheng, Chaohui
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 2. The code to identify the signature for GC diagnosis. All of the analysis programs to develop the diagnostic signature were written using the R language (R 3.1.3).