cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Final Report of the State Geologist, Volume V: The Glacial Geology of New Jersey
Creators: name: No Name Supplied
Publisher: name: Geological Survey of New Jersey
Year: 1902

description: The fifth volume of the Final Report of the State Geologist presents the results of a study of the glacial geology of New Jersey. Part I gives a thorough discussion of glaciers and glacial deposits  with reference to the deposits of New Jersey in particular.  Part II is more detailed in character. The three subdivisions  of the northern part of the State-the Appalachian province, the  Highland belt and the Triassic plain-are taken up in succession  and the glacial deposits are described, in part by counties and  townships and in part by drainage basins. This part, therefore,  will be of particular value to the local resident who has an intelligent interest in the geology of his home district; to the  teacher, who desires local illustrations of geologic processes and  formations; to the prospector and miner, who must differentiate  between local and foreign materials; to the farmer, who is interested  in the origin of the soils and subsoils; to the engineer, who is interested in planning reservoirs, laying out roads, erecting buildings and  bridges, and sinking artesian wells, needs a fuller knowledge  of the deposits which overlie the older rocks beneath.
Bolivina d'Orbigny 1839
Creators: name: Mamo, Briony L.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Chromista
Foraminifera
Globothalamea
Rotaliida
Bolivinitidae
Bolivina

description: Bolivina d’Orbigny 1839
Bolivina variabilis (Williamson 1858) (Fig. 18:4–9)
1858 Textularia variabilis Williamson, p. 76, pl. 6, figs 162, 163.
1980 Bolivina variabilis (Williamson); Boltovskoy et al., p. 18, pl. 4, figs 1–4. 1993 Bolivina variabilis (Williamson); Hottinger et al., p. 91, pl. 110, figs 1–4; pl. 111, figs 1, 2. 1994 Bolivina variabilis (Williamson); Loeblich & Tappan, p. 111, pl. 216, figs 7–15. 1995 Bolivina doniezi Cushman & Wickenden; Yassini & Jones, p. 129, figs 520, 521, 525. 2009 Bolivina variabilis (Williamson); Parker, p. 434, figs 315a–k.
2012 Bolivina variabilis (Williamson); Debenay, p. 172, pl. 12.
Description. See Boltovskoy et al. (1980, p. 18, pl. 4, figs 1–4) and Hottinger et al. (1993, p. 91, pl. 110, figs 1–4; pl. 111, figs 1, 2).
Remarks. Bolivina variabilis Williamson 1858 has an elongate, tapering, slender biserial test with a reticulate, polygonal, pitted ornament that extends over the entire test. The ornament decreases in spacing and size from the aboral to oral end. The sutures are depressed, the final chambers are slightly inflated and the aperture is ovate with a simple toothplate that extends from a partial apertural rim (Fig. 18:4–9).
Williamson (1858) did not designate a type locality from the British Isles for B. variabilis (Ellis & Messina 1940). Despite this, this species has an expansive global distribution (Boston, Torquay, Arran, Skye, Fowey, Shetland, Brixham, Whitehaven, Exmouth, Plymouth Sound and Eddystone—Williamson 1858; Puerto Deseado— Boltovskoy et al. 1980; Gulf of Aqaba—Hottinger et al. 1993; Western Timor sea from 93–95 m and Timor trough from 1159 m— Loeblich & Tappan 1994; coastal lagoons, inlet channels and sheltered oceanic embayments from the southeastern coast of Australia—Yassini & Jones 1995; Ningaloo Reef—Parker, 2009; New Caledonia from 5– 40 m—Debenay 2012).
Distribution within study area. Bolivina variabilis was collected in low abundance (one to nine specimens per site) most commonly in One Tree Lagoon 1. This species was absent from Wistari Reef.
description: Published as part of Mamo, Briony L., 2016, Benthic Foraminifera from the Capricorn Group, Great Barrier Reef, Australia, pp. 1-123 in Zootaxa 4215 (1) on pages 75-77, DOI: 10.11646/zootaxa.4215.1.1, http://zenodo.org/record/272923
MOESM1 of Strain differences in cuprizone induced demyelination
Creators: name: Qili Yu
name: Hui, Ryan
name: Jiyoung Park
name: Yangyang Huang
name: Kusnecov, Alexander
name: Dreyfus, Cheryl
name: Renping Zhou
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Evolutionary Biology
subject: Developmental Biology

description: Additional file 1: Figure S1. Standard for blind scoring of LFBâ  PAS stained midline corpus callosum sections. A corresponds to a score of 3 (intact). B corresponds to a score of 2, C corresponds to 1 and D corresponds to 0 (complete demyelination with minimum blue stain of myelin).Scale bar, 100 Âľm. Figure S2. Examples of positively stained cells. A-C, Example images of Iba1+ cells. A, Iba1 fluorescence. B, To-pro-3. C, overlaid image. Arrows point to Iba1+ cells, which show colocalization of Iba1 fluorescence and nuclear to-pro. D-F, same as A-C, but for GFAP staining. Scale bar, 30 Îźm.
Final Report of the State Geologist, Volume VI: The Clay and Clay Industry of New Jersey
Creators: name: No Name Supplied
Publisher: name: Geological Survey of New Jersey
Year: 1904

description: The sixth volume of the Final Report of the State Geologist presents the results of a study of the clay and clay industries in New Jersey. Part I discusses in considerable  detail the origin, modes of occurrence and physical and  chemical properties of clay. In Part II the stratigraphy of the  New Jersey clay deposits is considered, and the geological formations  of the State which contain workable clays are described.  Brief mention is made of all the worked deposits, reference being  made to the maps by locality numbers. In Part III the methods of  manufacture of the various classes of clay products are discussed,  with particular reference to New Jersey methods.  In Part IV the economic geology  of the New Jersey clays is considered, and they are discussed, first  by formations, their physical and chemical characters being summarized,  and then by counties.
Additional file 14: Table S2. of Genetic dissection of Sharka disease tolerance in peach (P. persica L. Batsch)
Creators: name: Cirilli, Marco
name: Rossini, Laura
name: Geuna, Filippo
name: Palmisano, Francesco
name: Angelantonio Minafra
name: CastrignanĂ˛, Tiziana
name: Gattolin, Stefano
name: Ciacciulli, Angelo
name: Babini, Anna
name: Liverani, Alessandro
name: Bassi, Daniele
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology

description: List of candidate genes identified on the chromosome 2 region associated to SNP_IGA_214703 (from 8.5 to 9.1Â Mb) (DOCX 9 kb)
Additional file 1: Figure S1. of Genome-wide analysis of the cellulose synthase-like (Csl) gene family in bread wheat (Triticum aestivum L.)
Creators: name: Simerjeet Kaur
name: Kanwarpal Dhugga
name: Beech, Robin
name: Singh, Jaswinder
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: FASTA sequences of CSL proteins used for the phylogenetic analysis. (PDF 453Â kb)
Sanguinicola inermis Plehn 1905
Creators: name: Shakarbaev, U. A.
name: Akramova, F. D.
name: Azimov, D. A.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Diplostomida
Aporocotylidae
Sanguinicola
Sanguinicola inermis

description: Sanguinicola inermis Plehn, 1905
Intermediate host: Lymnaea auricularia, L. peregra (Gastropoda: Lymnaeidae).
Cercarial morphotype group: furcocercaria.
Habitat: freshwater.
Definitive hosts: fish.
Localities: Republic of Karakalpakstan, northeastern and southern regions.
References: Nasimov (1967), Tukhmanyants, Shakhurina (1971), Azimov, Kabilov (1977), Davronov (1999), Shakarboyev et al. (2012), Shakarbaev et al. (2013, 2014 b).
description: Published as part of Shakarbaev, U. A., Akramova, F. D. & Azimov, D. A., 2020, The Taxonomic Survey Of The Cercarial Fauna (Platyhelminthes, Trematoda) In The Mollusks Of Uzbekistan, pp. 505-522 in Zoodiversity 54 (6) on page 512, DOI: 10.15407/zoo2020.06.505, http://zenodo.org/record/6377780
Sagrinella Saidova 1975
Creators: name: Mamo, Briony L.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Chromista
Foraminifera
Globothalamea
Rotaliida
Bolivinitidae
Sagrinella

description: Sagrinella Saidova 1975
Sagrinella jugosa (Brady 1884) (Fig. 18:10, 11)
Description. See Brady (1884, p. 358, pl. 42, fig. 7).
Distribution within study area. A single specimen of Sagrinella jugosa (Brady 1884), covered in detritus (Fig. 18:10) was collected from site 47 in One Tree Lagoon 3.
description: Published as part of Mamo, Briony L., 2016, Benthic Foraminifera from the Capricorn Group, Great Barrier Reef, Australia, pp. 1-123 in Zootaxa 4215 (1) on page 77, DOI: 10.11646/zootaxa.4215.1.1, http://zenodo.org/record/272923
Final Report of the State Geologist, Volume VII: Iron Mines and Mining in New Jersey
Creators: name: No Name Supplied
Publisher: name: Geological Survey of New Jersey
Year: 1910

description: The seventh volume of the Final Report of the State Geologist presents the results of a study of iron ore, mines and mining in New Jersey. It was written with the aim of presenting in a single publication the major facts known concerning the distribution and manner of occurrence or iron ores of the state. Many of the mines in the state that were formerly worked have been lost sight of and others have changed names.  For these reasons it has seemed desirable that the information contained in the older reports be examined and its essential features be correlated with the results of later investigations.  Practically every mine hole has been visited and every mine dump carefully examined, in the hope that it might throw light on the manner of formation of the ore.  The different classes or ores are discussed and the mines producing them are described.
Echinoparyphium aconiatum Dietz 1909
Creators: name: Shakarbaev, U. A.
name: Akramova, F. D.
name: Azimov, D. A.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Plagiorchiida
Echinostomatidae
Echinoparyphium
Echinoparyphium aconiatum

description: Echinoparyphium aconiatum Dietz, 1909
Intermediate host: Lymnaea auricularia, L. corvus, L. stagnalis, Pl аnorbis plаnorbis (Gastropoda: Lymnaeidae, Planоrbidae).
Cercarial morphotype group: echinostome.
Habitat: freshwater.
Definitive hosts: birds.
Localities: northeastern and northwestern regions.
References: Nasimov (1967), Arystanov (1976), Azimov, Kabilov (1977), Shakarboyev (2009), Shakarbaev et al. (2014 a).
description: Published as part of Shakarbaev, U. A., Akramova, F. D. & Azimov, D. A., 2020, The Taxonomic Survey Of The Cercarial Fauna (Platyhelminthes, Trematoda) In The Mollusks Of Uzbekistan, pp. 505-522 in Zoodiversity 54 (6) on page 512, DOI: 10.15407/zoo2020.06.505, http://zenodo.org/record/6377780
Alexandrella polarsterni
Creators: name: d'Acoz, Cédric d'Udekem
name: Verheye, Marie L.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Amphipoda
Stilipedidae
Alexandrella
Alexandrella polarsterni

description: Alexandrella polarsterni (Berge & Vader, 2005)
Bathypanoploea polarsterni Berge & Vader, 2005b: 81–83, fig. 1.
Bathypanoploea polarsterni – Berge & Vader 2005c: 5, figs 7–9.
Alexandrella sp. n. – Rauschert & Arntz 2015: 79, pl. 72.
Distribution
Northwest of Elephant Island, 60°54.60ʹ S, 55°45.90ʹ W, 235 m (holotype); southwestern Atlantic, off Argentina (off the province of Río Negro), 40°14ʹ06″ S, 55°24ʹ07″ W, 1475 m (paratype) (Berge & Vader 2005b, 2005c).
Remarks
The conspecificity between the holotype of Alexandrella polarsterni collected off Elephant Island at 235 m and the paratype collected off Argentina at 1475 m looks a priori suspect, based on the differences in location and depth, but cannot be refuted herein. The photograph of “ Alexandrella sp. nov.” given by Rauschert & Arntz (2015) matches very well with the figures of Berge & Vader (2005b, 2005c), especially for the shape of the mid-dorsal carina of urosomite 1; hence this specimen is identified as such. Rauschert & Arntz (2015) do not indicate the coordinates of their specimen, but in an early draft of their book made available to the authors, the following information was given: ANT-XXI/2, stn 145, 400 m, 7 mm. The coordinates of the station 145-1 (epibenthic sledge) are: 70°56.99ʹ S, 10°48ʹ26″ W to 70°56.97ʹ S, 10°47.7ʹ W [eastern shelf of the Weddell Sea], 402– 405 m.
description: Published as part of d'Acoz, Cédric d'Udekem & Verheye, Marie L., 2017, Epimeria of the Southern Ocean with notes on their relatives (Crustacea, Amphipoda, Eusiroidea), pp. 1-553 in European Journal of Taxonomy 359 on pages 173-174, DOI: 10.5852/ejt.2017.359, http://zenodo.org/record/3855694
Echinostoma revolutum
Creators: name: Shakarbaev, U. A.
name: Akramova, F. D.
name: Azimov, D. A.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Plagiorchiida
Echinostomatidae
Echinostoma
Echinostoma revolutum

description: Echinostoma revolutum (Frochlich, 1802)
Intermediate host: Lymnaea auricularia, L. corvus, L. stagnalis, Pl аnorbis plаnorbis, Anisus converiusculus, A. spirorbis (Gastropoda: Lymnaeidae, Planоrbidae).
Cercarial morphotype group: echinostome.
Habitat: freshwater.
Definitive hosts: birds.
Localities: Republic of Karakalpakstan, Fergana Valley, northeastern regions.
References: Nasimov (1967), Tukhmanyants, Shakhurina (1971), Arystanov (1976), Azimov, Kabilov (1977), Davronov (1999), Shakarboyev (2009), Shakarbaev et al. (2013, 2014 a, b).
description: Published as part of Shakarbaev, U. A., Akramova, F. D. & Azimov, D. A., 2020, The Taxonomic Survey Of The Cercarial Fauna (Platyhelminthes, Trematoda) In The Mollusks Of Uzbekistan, pp. 505-522 in Zoodiversity 54 (6) on page 512, DOI: 10.15407/zoo2020.06.505, http://zenodo.org/record/6377780
Rugobolivinella Hayward 1990
Creators: name: Mamo, Briony L.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Chromista
Foraminifera
Globothalamea
Rotaliida
Bolivinellidae
Rugobolivinella

description: Rugobolivinella Hayward 1990
Rugobolivinella elegans (Parr 1932) (Fig. 18:12, 13)
Description. See Parr (1932, p. 223).
Distribution within study area. Rugobolivinella elegans (Parr 1932) only occurred at site 20 in One Tree Lagoon 3 and at site 34 in One Tree Lagoon 1, with two and one specimens collected per site, respectively.
description: Published as part of Mamo, Briony L., 2016, Benthic Foraminifera from the Capricorn Group, Great Barrier Reef, Australia, pp. 1-123 in Zootaxa 4215 (1) on page 77, DOI: 10.11646/zootaxa.4215.1.1, http://zenodo.org/record/272923
Final Report of the State Geologist, Volume VIII: The Quarternary Formations of Southern NEw Jersey
Creators: name: No Name Supplied
Publisher: name: Geological Survey of New Jersey
Year: 1917

description: The eighth volume of the Final Report of the State Geologist presents the results of a study of the Quarternary formations of Southern New Jersey.  The report includes the following sections: The underlying Cretaceous and Tertiary formations; a general statement on Quarternary formations; the origing of Quarternary formations; principles involved; complications; and application to New Jersey.  Following this section are detailed sections of the Bridgeton formation, the Pensauren formation and the Cape May formation, with local details provided for each.
Additional file 2: Figure S2. of Genome-wide analysis of the cellulose synthase-like (Csl) gene family in bread wheat (Triticum aestivum L.)
Creators: name: Simerjeet Kaur
name: Kanwarpal Dhugga
name: Beech, Robin
name: Singh, Jaswinder
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: List of Csl subfamily genes, their protein sizes (number of amino acids), and multiple protein sequence alignments for different subfamilies. The conserved motifs (D, D, DXD, QXXRW) diagnostic of CSL proteins are highlighted with red boxes for each of the subfamilies. (PDF 465Â kb)
Echinoparyphium recurvatum
Creators: name: Shakarbaev, U. A.
name: Akramova, F. D.
name: Azimov, D. A.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Plagiorchiida
Echinostomatidae
Echinoparyphium
Echinoparyphium recurvatum

description: Echinoparyphium recurvatum (Linstow, 1873)
Intermediate host: Lymnaea auricularia (Gastropoda: Lymnaeidae).
Cercarial morphotype group: echinostome.
Habitat: freshwater.
Definitive hosts: birds.
Localities: Republic of Karakalpakstan, northeastern region.
References: Nasimov (1967), Arystanov (1976), Azimov, Kabilov (1977), Shakarbaev et al. (2013, 2014 a, b).
description: Published as part of Shakarbaev, U. A., Akramova, F. D. & Azimov, D. A., 2020, The Taxonomic Survey Of The Cercarial Fauna (Platyhelminthes, Trematoda) In The Mollusks Of Uzbekistan, pp. 505-522 in Zoodiversity 54 (6) on page 512, DOI: 10.15407/zoo2020.06.505, http://zenodo.org/record/6377780
Publicly Funded Cleanups Site Status Report 2003
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 2005

description: The Publicly Funded Cleanups Site Status Report 2003 details efforts by the New Jersey Department of  Environmental Protection's (NJDEP) Site Remediation and Waste Management Program to investigate and  clean up contaminated properties using public funds. The report summarizes work conducted through December 31, 2003 at 234 sites in the Remedial Response  Element of the Division of Remediation Management and Response, including 51 federal Superfund sites where  NJDEP is working with the United States Environmental Protection Agency (USEPA) to resolve environmental  problems. Sites covered in  this report include industrial facilities, inactive landfills, gasoline stations with leaking underground storage tanks,  illegal hazardous waste disposal sites and unknown source ground water contamination areas where municipal  or private potable wells have been affected. A discussion of the types of activities conducted by NJDEP and USEPA at publicly funded sites can be  found at The Remedial Process. This in-depth explanation provides details of the investigation, design,  construction and operation and maintenance phases of the remedial process.  The report contains a list of Completed Sites where all investigation and remedial work are finished. Also  available is Site Transfers, a list of contaminated sites that were initially addressed with public funds, but where  the responsible parties ultimately agreed to complete the necessary work with USEPA and/or NJDEP oversight.  The report also contains a list of site transfers and a glossary of terms.
Ecological Screening Criteria Table
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 2008

description: The New Jersey Department of Environmental Protection, Site Remediation Program, Environmental Toxicology and Risk Assessment (ETRA) Unit has developed this Ecological Screening Criteria Table from various sources to allow ease of reference for ecological screening criteria (ESC) for surface water, sediment and soil.  With the exception of the surface water quality standards (SWQS) (N.J.A.C. 7:9B), the ecological screening criteria are not promulgated standards, but are to be used as screening values in ecological assessments.  This table does not preclude responsible parties (RP's) from developing and/or proposing alternate ecological screening criteria.  The most recent version of the cited ecological screening criteria should be used and the table will be periodically updated as new screening values are developed.
Guidance for Beneficial Use of Soil and Non-Soil Material in the Remediation of  Contaminated Sites and Closure of Solid Waste Landfills
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 2008

description: The purpose of the Alternative Fill Protocol (AFP) is to standardize the conceptual approach for using contaminated material at site remediation sites (inclusive of landfills that are being formally remediated rather than operated). The AFP will also ensure appropriate documentation and notification of how the material is used at a site.    Central to the Alternative Fill Protocol (AFP) guidance is the principle that a remedial action should ultimately neither exacerbate existing environmental conditions at the site nor create or increase the hazard to human health. Furthermore, substantial increases in the difficulty, cost, and/or duration of the remedial action beyond that strictly required are to be avoided. Under the AFP, the approved materials will provide an economical replacement for clean soil. However, the required use of clean material, such as for final capping, can not be changed under the AFP.  The purpose of this document is to provide guidance for the Site Remediation Program (SRP)  regarding the beneficial use of contaminated soil and non-soil materials, that might otherwise  become solid waste, in a way that is protective of human health, safety and the environment.  Certain waste types including, but not limited to, "RCRA hazardous wastes" and certain PCB  wastes regulated under the Toxic Substance Control Act are prohibited for use or reuse under  this guidance document.
Hypoderaeum conoideum
Creators: name: Shakarbaev, U. A.
name: Akramova, F. D.
name: Azimov, D. A.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Plagiorchiida
Echinostomatidae
Hypoderaeum
Hypoderaeum conoideum

description: Hypoderaeum conoideum (Bloch, 1782)
Intermediate host: Lymnaea auricularia, L. corvus, L. stagnalis, L. subdisjuncta (Gastropoda: Lymnaeidae).
Cercarial morphotype group: echinostome.
Habitat: freshwater.
Definitive hosts: birds.
Localities: Republic of Karakalpakstan, Tashkent and Syrdarya Provinces.
References: Nasimov (1967), Arystanov (1976), Azimov, Kabilov (1977), Davronov (1999), Shakarboyev et al. (2012), Shakarbaev et al. (2013, 2014 b).
description: Published as part of Shakarbaev, U. A., Akramova, F. D. & Azimov, D. A., 2020, The Taxonomic Survey Of The Cercarial Fauna (Platyhelminthes, Trematoda) In The Mollusks Of Uzbekistan, pp. 505-522 in Zoodiversity 54 (6) on pages 512-513, DOI: 10.15407/zoo2020.06.505, http://zenodo.org/record/6377780
Loxostomina Sellier de Civrieux 1969
Creators: name: Mamo, Briony L.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Chromista
Foraminifera
Globothalamea
Rotaliida
Bolivinitidae
Loxostomina

description: Loxostomina Sellier de Civrieux 1969
Loxostomina limbata (Brady 1884) (Fig. 18:14, 15)
Description. See Brady (1884, p. 419, pl. 52, figs 26–28).
Distribution within study area. Loxostomina limbata (Brady 1884) was only found in One Tree Lagoons with an abundance of two specimens per site. This taxon was absent from Heron and Sykes Reefs and the channel sample.
description: Published as part of Mamo, Briony L., 2016, Benthic Foraminifera from the Capricorn Group, Great Barrier Reef, Australia, pp. 1-123 in Zootaxa 4215 (1) on page 77, DOI: 10.11646/zootaxa.4215.1.1, http://zenodo.org/record/272923
Favocassidulina Loeblich & Tappan 1957
Creators: name: Mamo, Briony L.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Chromista
Foraminifera
Globothalamea
Rotaliida
Cassidulinidae
Favocassidulina

description: Favocassidulina Loeblich & Tappan 1957
Favocassidulina favus (Brady 1877) (Fig. 18:16, 17)
Description. See Brady (1877, p. 535).
Distribution within study area. Favocassidulina favus (Brady 1877) was only found in One Tree Lagoons 1 and 3 at sites 39, 43 and 47 with no more than two specimens per site.
description: Published as part of Mamo, Briony L., 2016, Benthic Foraminifera from the Capricorn Group, Great Barrier Reef, Australia, pp. 1-123 in Zootaxa 4215 (1) on pages 77-78, DOI: 10.11646/zootaxa.4215.1.1, http://zenodo.org/record/272923
Known Contaminated Sites in New Jersey Report: Active Sites with Confirmed Contamination
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 2008

description: The Active Sites with Confirmed Contamination is one of three Known Contaminated Sites in New Jersey Reports.  This is the second release and a new format of the Known Contaminated Sites in New Jersey Report. The report provides a list of sites where contaminated soil and/or ground water has been confirmed. As new sites are identified and others are remediated, the number of contaminated sites in New Jersey and their statuses constantly change.  The new format is a move from a static report towards a dynamic report, which will provide real-time site status information. The new approach to reporting site status information involves three reports where past reporting had involved a single report.    The three reports are: Active Sites With Confirmed Contamination, Pending Sites With Confirmed Contamination, and Closed Sites With Remediated Contamination. Active Sites are those sites having one or more active case with any number of Pending and Closed cases.
Known Contaminated Sites in New Jersey Report: Pending Sites with Confirmed Contamination
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 2008

description: The Pending Sites with Confirmed Contamination is one of three Known Contaminated Sites in New Jersey Reports.  This is the second release and a new format of the Known Contaminated Sites in New Jersey Report. The report provides a list of sites where contaminated soil and/or ground water has been confirmed. As new sites are identified and others are remediated, the number of contaminated sites in New Jersey and their statuses constantly change.  The new format is a move from a static report towards a dynamic report, which will provide real-time site status information. The new approach to reporting site status information involves three reports where past reporting had involved a single report.    The three reports are: Active Sites With Confirmed Contamination, Pending Sites With Confirmed Contamination, and Closed Sites With Remediated Contamination. Pending Sites are those sites having one or more pending cases, no active cases, and any number of closed cases.
Known Contaminated Sites in New Jersey Report: Close Sites with Remediated Contamination
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 2008

description: The Closed Sites with Remediated Contamination is one of three Known Contaminated Sites in New Jersey Reports.  This is the second release and a new format of the Known Contaminated Sites in New Jersey Report. The report provides a list of sites where contaminated soil and/or ground water has been confirmed. As new sites are identified and others are remediated, the number of contaminated sites in New Jersey and their statuses constantly change.  The new format is a move from a static report towards a dynamic report, which will provide real-time site status information. The new approach to reporting site status information involves three reports where past reporting had involved a single report.    The three reports are: Active Sites With Confirmed Contamination, Pending Sites With Confirmed Contamination, and Closed Sites With Remediated Contamination. Closed sites are those sites having only closed cases. Sites in this category have no active or pending cases.
Technical Requirements for Site Remediation,N.J.A.C. 7:26E
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 2008

description: These rules constitute the minimum technical requirements to investigate and remediate contamination at any site.  The rules cover general information, including notification, certifications, documentation, definitions and health and safety plan; quality assurance for sampling and laboratory analysis; preliminary assessment and site investigation; remedial investigations; remedial action selections; remedial action; permit identification and application schedule; engineering and institutional controls.
Remediation Standards, N.J.A.C. 7:26D
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 2008

description: These rules implement the provisions of the Brownfield and Contaminated Site Remediation Act, N.J.S.A. 58:10B-12, and other statutes, by establishing minimum standards for the remediation of contaminated ground water and surface water, and by establishing the minimum residential direct contact and non-residential direct contact soil remediation standards.    These rules do not establish the minimum impact to ground water soil remediation standards; these standards shall be developed by the Department on a site-by-site basis, pursuant to the Department's authority under N.J.S.A. 58:10B-12a.    These rules supplement the requirements of the Technical Requirements for Site Remediation rules, N.J.A.C. 7:26E. The rules
DNA polymerase ζ suppresses the radiosensitivity of glioma cells by regulating the PI3K/AKT/mTOR pathway
Creators: name: Ding, Jiqiang
name: Chen, Zhisheng
name: Ding, Weilong
name: Xiang, Yongsheng
name: Yang, Junbao
Publisher: name: Taylor & Francis
Year: 2023
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Hematology

description: Glioblastoma is the most common glioma with high mortality and poor prognosis. Radiation resistance is one of the large challenges in the treatment of glioma. The study aimed to identify whether DNA polymerase ζ affects glioma cell radiosensitivity. The mRNA and protein levels of REV3L and REV7 were examined using quantitative real-time PCR and western blot. After REV3L and REV7 knockdown in a GBM cell line (A172), we assessed cell viability, colonies, apoptosis, and immune escape. The underlying mechanisms were evaluated using western blot and were confirmed using rescue experiments. The results showed that REV3L and REV7 levels were increased in glioma and related to poor survival. γ-ray treatment inhibited cell viability, survival fraction, and immune escape, and induced apoptosis of glioma cells from a GBM cell line, whereas knockdown of REV3L or REV7 enhanced these effects. Mechanically, silencing of REV3L or REV7 inactivated the PI3K/AKT/mTOR pathway. IGF-1 treatment abrogated the effects on cell viability, colonies, and apoptosis induced by REV3L or REV7 knocking down. Taken together, silencing of REV3L and REV7 inhibited radiation resistance via inactivating the PI3K/AKT/mTOR pathway, suggesting that targeting DNA polymerase ζ may be a new strategy to reduce the radiotherapy resistance of glioma.
Globocassidulina Volshinova 1960
Creators: name: Mamo, Briony L.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Chromista
Foraminifera
Globothalamea
Rotaliida
Cassidulinidae
Globocassidulina

description: Globocassidulina Volshinova 1960
Globocassidulina bisecta Nomura 1983 (Fig. 18:18, 19)
Description. See Nomura (1983, p. 73, pl. 2, figs 2, 3; pl. 14, figs 8–12; pl. 15, figs 1–5).
Distribution within study area. Globocassidulina bisecta Nomura 1983 was collected from Heron and One Tree Lagoons and Sykes Reef with no more than two specimens found per site. Seven of the ten sites containing G. bisecta were in One Tree Lagoons.
description: Published as part of Mamo, Briony L., 2016, Benthic Foraminifera from the Capricorn Group, Great Barrier Reef, Australia, pp. 1-123 in Zootaxa 4215 (1) on page 78, DOI: 10.11646/zootaxa.4215.1.1, http://zenodo.org/record/272923
Order of Magnitude Guidance
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 2008

description: This document is intended to help remediating parties comply with the new soil remediation standards described in new Remediation Standards rules at N.J.A.C. 7:26D, adopted June 2, 2008, and to help with the development of alternative soil remediation standards.  Order of magnitude provisions are established by the Brownfield Act, N.J.S.A. 58:10B-12j and  13e (See Appendix 1) and are implemented through several provisions of the Technical Rules  (See Appendix 2).  This documents provides guidance on the applicability of order of magnitude evaluations for soil remediation; it explains when increases or decreases in remediation standard concentrations are allowed; it describes when the order of magnitude evaluation is required; and it lists the applicable provisions of the Brownfield Act and of the Technical Requirements for Site Remediation Rule.
Fasciolidae RAILLIET 1895
Creators: name: Shakarbaev, U. A.
name: Akramova, F. D.
name: Azimov, D. A.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Plagiorchiida
Fasciolidae

description: FASCIOLIDAE RAILLIET, 1895
Fas сiola hepatica Linnaeus, 1758
Intermediate host: Lymnaea truncatula (Gastropoda: Lymnaeidae).
Cercarial morphotype group: gymnocephalous.
Habitat: freshwater.
Definitive host group: mammals.
Localities: Andizhan, Namangan, Fergana, Tashkent, Syrdarya, Jizakh, Kashkadarya and Surkhandarya Provinces.
References: Salimov (1965, 1989), Nasimov (1967), Tukhmanyants, Shakhurina (1971), Azimov, Kabilov (1977), Nurullayev (1991), Davronov (1999), Azimov et al. (2006), Shakarboyev (2009), Shakarbaev et al. (2013).
description: Published as part of Shakarbaev, U. A., Akramova, F. D. & Azimov, D. A., 2020, The Taxonomic Survey Of The Cercarial Fauna (Platyhelminthes, Trematoda) In The Mollusks Of Uzbekistan, pp. 505-522 in Zoodiversity 54 (6) on page 513, DOI: 10.15407/zoo2020.06.505, http://zenodo.org/record/6377780
Isodontia pelopoeiformis
Creators: name: Gadallah, Neveen S.
name: Abu El-Ghiet, Usama M.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Sphecidae
Isodontia
Isodontia pelopoeiformis

description: Isodontia pelopoeiformis (Dahlbom, 1845)
Distribution in Jazan and collecting period: Jazan (February) (Guichard, 1988a).
description: Published as part of Gadallah, Neveen S. & Abu El-Ghiet, Usama M., 2024, Sphecidae sensu lato (Hymenoptera: Apoidea) of the Jazan Province, south-west of Saudi Arabia, with the description of two new species, pp. 71-95 in Zootaxa 5492 (1) on page 92, DOI: 10.11646/zootaxa.5492.1.4, http://zenodo.org/record/13212094
Circ_0007535 upregulates TGFBR1 to promote pulmonary fibrosis in TGF-β1-treated lung fibroblasts via sequestering miR-18a-5p
Creators: name: Shen, Ming
name: Wang, Xinyi
name: Chang, Xiaofeng
name: Li, Zhun
name: Jiang, Na
name: Han, Zhuoyue
name: Liu, Xin
Publisher: name: Taylor & Francis
Year: 2023
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Statistics
subject: FOS: Mathematics
subject: Hematology

description: Circular RNAs (circRNAs) are functional molecules in all kinds of fibrosis diseases. The current study was performed for the exploration of circ_0007535 in pulmonary fibrosis. RNA levels for circ_0007535, miR-18a-5p, and transforming growth factor-β receptor 1 (TGFBR1) were assayed via a reverse transcription-quantitative polymerase chain reaction. Cell growth was determined by cell counting kit-8 assay for viability and ethynyl-2’-deoxyuridine assay for proliferation. Cell invasion and migration were examined by transwell assay and scratch assay. Western blot was performed for the detection of different proteins. Enzyme-linked immunosorbent assay was used to assess inflammatory response. The interaction analysis was conducted using dual-luciferase reporter assay, RNA immunoprecipitation assay, and biotin-coupled pull-down assay. Circ_0007535 was significantly upregulated by TGF-β1 in HFL1 cells. TGF-β1-induced proliferation, motility, ECM accumulation, and inflammatory reaction in HFL1 cells were alleviated by circ_0007535 knockdown. Circ_0007535 exhibited interaction with miR-18a-5p, and miR-18a-5p inhibition reversed all influences of circ_0007535 downregulation in TGF-β1-treated HFL1 cells. Circ_0007535 acted as a miR-18a-5p sponge to regulate the expression of downstream target TGFBR1. MiR-18a-5p induced TGFBR1 level inhibition to attenuate TGF-β1-mediated cell injury in HFL1 cells. This study evidenced that circ_0007535 facilitated TGF-β1-induced pulmonary fibrosis by depending on the absorption of miR-18a-5p to upregulate TGFBR1.
Development of Alternative Remediation Standards for the Ingestion-Dermal Pathway and Ingestion-Dermal Standards Compliance
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 2008

description: This document is intended to help remediating parties comply with the new soil remediation standards described in new Remediation Standards rules at N.J.A.C. 7:26D, adopted June 2, 2008, and to help with the development of alternative soil remediation standards.  This document provides guidance on alternative remediation options for the ingestion-dermal pathway.  An alternative remediation standard for the ingestion-dermal pathway may be requested based  on: (1) advancements in risk-related methodology that support standards derivation such as new  toxicity or exposure information, improved or advanced models and methods; (2) appropriate  site-specific default parameters (for lead models); or (3) different land use determinations such  as park and recreational scenarios.  The document also addresses compliance, specifically why using site wide averaging is not usually accepted.
Inhalation Standards Compliance: Development of Alternative Remediation Standards for the Inhalation Pathway
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 2008

description: This document is intended to help remediating parties comply with the new soil remediation standards described in new Remediation Standards rules at N.J.A.C. 7:26D, adopted June 2, 2008, and to help with the development of alternative soil remediation standards. The Brownfield and Contaminated Site Remediation Act (N.J.S.A. 58:10B-1 et seq.) requires  the New Jersey Department of Environmental Protection (Department) to consider site-specific  factors in determining alternative remediation standards (ARS). These site-specific factors may  vary from those used by the Department in the development of the adopted soil remediation  standards pursuant to this section. The Department will also review other proposed approaches incorporating different models,  assumptions, and information on a case by case basis. This document provides guidance on the development of these alternative remediation standards and on compliance with inhalation standards.
Guidance for the use of the Synthetic Precipitation Leaching Procedure to Develop Site-Specific Impact to Ground Water Remediation Standards
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 2008

description: The Synthetic Precipitation Leaching Procedure (SPLP) is one method identified by the  Department that may be used to develop a site-specific impact to groundwater soil remediation  standard.  SPLP is an EPA SW-846 analytical method  (Method 1312) that can be used to determine the concentration of contaminant that will leach  from soil (USEPA, 1998). SPLP offers a quick and inexpensive method to develop remediation  criteria that will be protective of ground water at a specific site. This guidance provides procedures that the person responsible for conducting the  remediation may use to develop remediation standards for low volatility organic and inorganic  contaminants. It is not appropriate to use this method to develop remediation standards for  volatile organic contaminants.
Fasciola gigantica
Creators: name: Shakarbaev, U. A.
name: Akramova, F. D.
name: Azimov, D. A.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Nemertea
Trematoda
Plagiorchiida
Fasciolidae
Fasciola
Fasciola gigantica

description: Fasсiola gigantica (Cobbold, 1856)
Intermediate host: Lymnaea auricularia, L. bactriana, L. subdisjuncta, L. impure (Gastropoda: Lymnaeidae).
Cercarian group: gymnocephalous.
Habitat: freshwater.
Definitive host group: mammals.
Localities: Republic of Karakalpakstan, Khorezm, Kashkadarya, Surkhandarya, Syrdarya, Tashkent and Samarkand Provinces.
References: Nasimov (1967), Gekhtin (1967), Arystanov (1976), Azimov, Kabilov (1977), Salimov (1989), Nurullayev (1991), Davronov (1999), Kojabayev (2001), Salimov et al. (1986), Shakarboyev (2009), Shakarbaev et al. (2013, 2014 a, b).
description: Published as part of Shakarbaev, U. A., Akramova, F. D. & Azimov, D. A., 2020, The Taxonomic Survey Of The Cercarial Fauna (Platyhelminthes, Trematoda) In The Mollusks Of Uzbekistan, pp. 505-522 in Zoodiversity 54 (6) on page 513, DOI: 10.15407/zoo2020.06.505, http://zenodo.org/record/6377780
Development of Site-Specific Impact to Ground Water Soil Remediation Standards Using the Soil-Water Partition Equation
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 2008

description: This guidance describes the use of the Soil-Water Partition Equation to develop site-specific  impact to ground water (IGW) soil remediation standards. A modified version of the USEPA Soil Screening Level (SSL) Soil-Water Partition Equation  (USEPA, 1996b, Equation 24) may be used to calculate site-specific IGW soil remediation  standards for mobile contaminants. The Department expanded Equation 24 to separate the target  leachate concentration discussed in the USEPA SSL guidance document into its component  parts. The target leachate concentration is the product of the health-based ground water criterion  (Cgw), and the dilution-attenuation factor (DAF). This modification allows the Department's  health-based Ground Water Quality Criterion to be directly entered as an input parameter. The Soil-Water Partition Equation back-calculates a concentration in  soil from an acceptable ground water concentration.
Guidance for the Determination of the Dilution-Attenuation Factor for the Impact to Ground Water Pathway
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 2008

description: The guidance document explains the use of the dilution-attenuation factor in determining impact to ground water. When infiltrating soil water reaches the water table, it is mixed with ground water and contaminants are diluted. The resulting contaminant concentration in the groundwater is therefore lower than that in the infiltrating water. A dilution-attenuation factor (DAF) is used to account for this process. This factor is described in the USEPA Soil Screening Level (SSL) document (USEPA 1996). The factor is used in the various options for calculating impact to groundwater soil cleanup criteria, including calculation of the Leachate Criterion (LC).
Philophthalmus lucipetus
Creators: name: Shakarbaev, U. A.
name: Akramova, F. D.
name: Azimov, D. A.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Plagiorchiida
Philophthalmidae
Philophthalmus
Philophthalmus lucipetus

description: Philophthalmus lucipetus (Rudolphi, 1819)
Intermediate host: Melanoides kainarensis (Gastropoda: Melanoididae (= Thiaridae)).
Cercarian group: megalurous.
Habitat: freshwater.
Definitive host group: birds.
Locality: Samarkand Province.
References: Shakarbayev et al. (2016).
description: Published as part of Shakarbaev, U. A., Akramova, F. D. & Azimov, D. A., 2020, The Taxonomic Survey Of The Cercarial Fauna (Platyhelminthes, Trematoda) In The Mollusks Of Uzbekistan, pp. 505-522 in Zoodiversity 54 (6) on page 513, DOI: 10.15407/zoo2020.06.505, http://zenodo.org/record/6377780
Sphex pruinosus Germar 1817
Creators: name: Gadallah, Neveen S.
name: Abu El-Ghiet, Usama M.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Sphecidae
Sphex
Sphex pruinosus

description: Sphex pruinosus Germar, 1817
Distribution in Jazan and collecting period: Abu Arish (March) (Guichard, 1988a).
description: Published as part of Gadallah, Neveen S. & Abu El-Ghiet, Usama M., 2024, Sphecidae sensu lato (Hymenoptera: Apoidea) of the Jazan Province, south-west of Saudi Arabia, with the description of two new species, pp. 71-95 in Zootaxa 5492 (1) on page 92, DOI: 10.11646/zootaxa.5492.1.4, http://zenodo.org/record/13212094
Guidance for the Evaluation of Immobile Chemicals for the Impact to Ground Water Pathway
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 2008

description: This guidance provides procedures that the person responsible for conducting the remediation  may use to evaluate potential impacts to ground water from immobile chemicals. Scientific  evidence suggests that some chemicals become more resistant to desorption from soil as contact  time increases.  Chemicals that have relatively low transport potential due to their high soil adsorption  coefficients, may over time, become irreversibly adsorbed to soil and therefore immobile under  normal conditions. If the person can not demonstrate that a contaminant is an immobile chemical or if conditions at  the site could cause the contaminant to become mobile, the person is required to develop a site-specific  soil remediation standard for the impact to ground water pathway using other guidance  that is available from the Department and remediate the soil contamination.