cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1 of Antibody engineering improves neutralization activity against K417 spike mutant SARS-CoV-2 variants
Creators: name: Li, Lili
name: Gao, Meiling
name: Jiao, Peng
name: Zu, Shulong
name: Deng, Yong-qiang
name: Wan, Dingyi
name: Cao, Yang
name: Duan, Jing
name: Aliyari, Saba R
name: Li, Jie
name: Shi, Yueyue
name: Rao, Zihe
name: Qin, Cheng-feng
name: Guo, Yu
name: Cheng, Genhong
name: Yang, Heng
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Additional file 1: Figure S1. Germline usage comparison of P4A1, CC12.1, CC12.3 and B38 mAbs. A Germline usage comparison of heavy chain and light chain of P4A1, CC12.1, CC12.3 and B38 mAbs. B Alignment of the heavy chain and light chain variable domain sequence of P4A1, CC12.1, CC12.3 and B38 mAbs. Figure S2. RBD binding and pseudovirus neutralizing activity comparison of R3P1-E4, CB6, S309 and REGN10933 mAbs. A The EC50 of R3P1-E4, CB6, S309 and REGN10933 mAbs binding with RBD WT and variants. B The IC50 of SARS-CoV-2 pseudovirus neutralizing activity of R3P1-E4, CB6, S309 and REGN10933 mAbs. Figure S3. Structural comparison of the binding mode among R3P1-E4 and several reported RBD-specific neutralizing antibodies from various germlines. A Superposition of R3P1-E4 (deep teal, PDB: 7VMU), B38 (orange, PDB: 7BZ5), CB6 (deep purple, PDB: 7C01), H014 (green, PDB: 7CAH), CR3022 (blue, PDB: 6ZH9), REGN10987 (magenta, PDB: 6XDG), REGN10933 (hot pink, PDB: 6XDG), to SARS-CoV-2 spike glycoprotein RBD (gray). B Surface representation of several Spike RBD mutations isolated from clinic. The SARS-CoV-2 RBD is colored in gray and displayed in surface representation. The epitope of R3P1-E4 heavy chain (cyan), light chain (pink), residue K417 (light blue) are displayed and colored as Figure 5. The clinic mutations L452, G476, S477, T478, E484, F490, S494 and N501Y, which located at the edge of the R3P1-E4 epitope are colored in lime green. The clinic mutations N354, D364, V367, R408, W436, N439 and v483, which are adjacent to the epitope residues or on the opposite side of the R3P1-E4 epitope, are colored in purple blue. Table S1. Data collection and refinement statistics for R3P1-E4-RBD complex. Table S2. Residues contributed to interaction between R3P1-E4/SARS-CoV-2 RBD. Table S3. PISA analysis of interaction between R3P1-E4/SARS-CoV-2-RBD.
title: ADCO, Cartulaire de l'abbaye de Saint-Seine (XIIIe siècle), Cart. 165 (10 H 6, ms. 139), 354 pages, f. 0058
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2009
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire

description: Cartulaire de l'abbaye de Saint-Seine (XIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 165 (10 H 6, ms. 139), 354 pages, f. 0058, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de l'abbaye de Saint-Seine (XIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 165 (10 H 6, ms. 139), 354 pages, f. 0058, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Saint-Seine
description: Provenance: http://www.wikidata.org/entity/Q2820709
Light Vector Resonances in the Effective Chiral Lagrangian for Heavy Mesons
Creators: name: Casalbuoni, R.
name: Deandrea, A.
name: Di Bartolomeo, N.
name: Gatto, R.
name: Feruglio, F.
name: Nardulli, G.
Publisher: name: arXiv
Year: 1992
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We modify a chiral effective lagrangian recently suggested to describe interactions of the light pseudoscalars with mesons containing a heavy quark, so as to incorporate light vector resonances, such as $ρ$, etc. The modification uses the hidden gauge symmetry approach. As a preliminary example we present an application to the semileptonic $D\to K^\star$ decay.
description: 12 pages 3 figures (not included), LaTeX (style article), UGVA-DPT 1992/07-780, BARI-TH/92-116
On Hopf-induced deformation of topological locus
Creators: name: Mironov, A.
name: Morozov, A.
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Geometric Topology (math.GT)
subject: Quantum Algebra (math.QA)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: We provide a very brief review of the description of colored invariants for the Hopf link in terms of characters, which need to be taken at a peculiar deformation of the topological locus, depending on one of the two representations associated with the two components of the link. Most important, we extend the description of this locus to conjugate and, generically, to composite representations and also define the "adjoint" Schur functions emerging in the dual description.
description: 10 pages
Quantum Gravity and Non-unitarity in Black Hole Evaporation
Creators: name: Kiefer, Claus
name: Mueller, Rainer
name: Singh, Tejinder P.
Publisher: name: arXiv
Year: 1993
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We discuss the relevance of quantum gravitational corrections to the functional Schrödinger equation for the information loss paradox in black hole evaporation. These corrections are found from the Wheeler-DeWitt equation through a semiclassical expansion scheme. The dominant contribution in the final evaporation stage, when the black hole approaches the Planck regime, is a term which explicitly violates unitarity in the non-gravitational sector. While pure states remain pure, there is an increase in the degree of purity for non-pure states in this sector. This result holds irrespective of whether full quantum gravity respects unitarity or not.
description: 6 pages, Latex, ZU-TH 25/93
Avoiding overfitting of multilayer perceptrons by training derivatives
Creators: name: Avrutskiy, V. I.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Neural and Evolutionary Computing (cs.NE)
subject: FOS: Computer and information sciences

description: Resistance to overfitting is observed for neural networks trained with extended backpropagation algorithm. In addition to target values, its cost function uses derivatives of those up to the $4^{\mathrm{th}}$ order. For common applications of neural networks, high order derivatives are not readily available, so simpler cases are considered: training network to approximate analytical function inside 2D and 5D domains and solving Poisson equation inside a 2D circle. For function approximation, the cost is a sum of squared differences between output and target as well as their derivatives with respect to the input. Differential equations are usually solved by putting a multilayer perceptron in place of unknown function and training its weights, so that equation holds within some margin of error. Commonly used cost is the equation's residual squared. Added terms are squared derivatives of said residual with respect to the independent variables. To investigate overfitting, the cost is minimized for points of regular grids with various spacing, and its root mean is compared with its value on much denser test set. Fully connected perceptrons with six hidden layers and $2\cdot10^{4}$, $1\cdot10^{6}$ and $5\cdot10^{6}$ weights in total are trained with Rprop until cost changes by less than 10% for last 1000 epochs, or when the $10000^{\mathrm{th}}$ epoch is reached. Training the network with $5\cdot10^{6}$ weights to represent simple 2D function using 10 points with 8 extra derivatives in each produces cost test to train ratio of $1.5$, whereas for classical backpropagation in comparable conditions this ratio is $2\cdot10^{4}$.
Number density structures in the inner heliosphere
Creators: name: Stansby, D.
name: Horbury, T. S.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Space Physics (physics.space-ph)
subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: The origins and generation mechanisms of the slow solar wind are still unclear. Part of the slow solar wind is populated by "number density structures", discrete patches of increased number density that are frozen in to and move with the bulk solar wind. In this paper we aimed to provide the first in-situ statistical study of number density structures in the inner heliosphere. We reprocessed in-situ ion distribution functions measured by Helios in the inner heliosphere to provide a new reliable set of proton plasma moments for the entire mission. From this new data set we looked for number density structures measured within 0.5 AU of the Sun and studied their properties. We identified 140 discrete areas of enhanced number density. The structures occurred exclusively in the slow solar wind and spanned a wide range of length scales from 50 Mm to 2000 Mm, which includes smaller scales than have been previously observed. They were also consistently denser and hotter that the surrounding plasma, but had lower magnetic field strengths, and therefore remained in pressure balance. Our observations show that these structures are present in the slow solar wind at a wide range of scales, some of which are too small to be detected by remote sensing instruments. These structures are rare, accounting for only 1\% of the slow solar wind measured by Helios, and are not a significant contribution to the mass flux of the solar wind.
description: Accepted for publication in A&A
Numerical Methods in Cosmological Global Texture Simulations
Creators: name: Borrill, Julian
Publisher: name: arXiv
Year: 1994
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Numerical simulations of the evolution of a global topological defect field have two characteristic length scales --- one macrophysical, of order the field correlation length, and the other microphysical, of order the field width. The situation currently of most interest to particle cosmologists involves the behaviour of a GUT-scale defect field at the epoch of decoupling, where the ratio of these scales is typically of order $10^{50}$. Such a ratio is unrealisable in numerical work, and we consider the approximations which may be employed to deal with this. Focusing on the case of global texture we outline the implementation of the associated algorithms, and in particular note the subtleties involved in handling texture unwinding events. Comparing the results in each approach then establishes that, subject to certain constraints on the minimum grid resolution, the methods described are both robust and consistent with one another.
description: LaTeX, IMPERIAL/TP/93-94/22
The Sublimative Torques of Jupiter Family Comets and Mass Wasting Events on Their Nuclei
Creators: name: Steckloff, Jordan K.
name: Samarasinha, Nalin H.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: Sublimative outgassing of comets produces torques that alter the rotation state of their nuclei. Recently, parameterized sublimative torque models have been developed to study rotation state changes of individual comet nuclei and populations of cometary bodies. However, these models simplify the interactions between the escaping gas and cometary surface into only a few parameters that hide the details of these complex interactions. Here we directly compare the X-parameter model (Samarasinha & Mueller, 2013) with the SYORP model (Steckloff & Jacobson, 2016) to tease out insights into the details of the gas-surface interactions driving sublimative torques. We find that, for both of these models to accurately model sublimative torques, the number of sublimating molecules that contribute to the net torque is largely independent of the detailed shape and activity of the nucleus, but rather depends primarily on the size of the nucleus and the effective heliocentric distance of the comet. We suggest that cometary activity must be largely restricted to regions of steep gravitational surface slopes (above the angle of repose), where mass wasting can refresh activity by shedding mantles of refractory materials and exposing fresh volatiles. We propose a new classification scheme for comets based on the frequency of this mass-wasting process (relative to the timescale of activity fading): quasi-equilibrium, episodic, quasi-dormant, and extinct.
description: 16 pages (plus 9 pages of references), including 3 figures. Accepted for publication in Icarus
Progresses on the development of stereoselective [2+2], [2+3] and [4+3] cycloadditions.
Creators: name: Disetti, Paolo
Publisher: name: Royal College of Surgeons in Ireland
Year: 2019
Subjects: Uncategorized

description: The present work dealt with the preparation of some key intermediates and their use for the generation of chemical diversity. In Chapter 2 we described a Catalytic Asymmetric Conjugate Addition of isocyanoacetates to 4-nitro-5-styrylisoxmles. In Chapter 3 we described a new strategy for the preparation of medium sized oxepanes oxocanes and oxonanes. In Chapter 4 we described a novel route to alkene-hctionalised monobactams and their potential in diversity oriented synthesis is still in progress.
Reality and Myths of AGN Feedback
Creators: name: Husemann, Bernd
name: Harrison, Chris M.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Feedback from active galactic nuclei (AGN) remains controversial despite its wide acceptance as necessary to regulate massive galaxy growth. A dedicated workshop was held on 16-20 October 2017 at the Lorentz Center in Leiden to distinguish between the reality and myths of AGN feedback from the observational side. Here, we summarize briefly all the sessions and outcome of the stimulating workshop. More details on the outcome of the discussions are provided in a series of articles.
description: Author's version of Nature Astronomy Meeting Report. View-only version of full text publicly available at this link: http://rdcu.be/HUTV
Nonlocal problems in perforated domains
Creators: name: Pereira, Marcone C.
name: Rossi, Julio D.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Analysis of PDEs (math.AP)
subject: FOS: Mathematics

description: In this paper we analyze nonlocal equations in perforated domains. We consider nonlocal problems of the form $f(x) = \int_{B} J(x-y) (u(y) - u(x)) dy$ with $x$ in a perforated domain $Ω^ε\subset Ω$. Here $J$ is a non-singular kernel. We think about $Ω^ε$ as a fixed set $Ω$ from where we have removed a subset that we call the holes. We deal both with the Neumann and Dirichlet conditions in the holes and assume a Dirichlet condition outside $Ω$. In the later case we impose that $u$ vanishes in the holes but integrate in the whole $\mathbb{R}^N$ ($B=\mathbb{R}^N$) and in the former we just consider integrals in $\mathbb{R}^N$ minus the holes ($B=\mathbb{R}^N \setminus (Ω\setminus Ω^ε)$). Assuming weak convergence of the holes, specifically, under the assumption that the characteristic function of $Ω^ε$ has a weak limit, $χ_ε \rightharpoonup \mathcal{X}$ weakly$^*$ in $L^\infty(Ω)$, we analyze the limit as $ε\to 0$ of the solutions to the nonlocal problems proving that there is a nonlocal limit problem. In the case in which the holes are periodically removed balls we obtain that the critical radius is of order of the size of the typical cell (that gives the period). In addition, in this periodic case, we also study the behavior of these nonlocal problems when we rescale the kernel in order to approximate local PDE problems.
Observing positive and negative AGN feedback
Creators: name: Cresci, Giovanni
name: Maiolino, Roberto
Publisher: name: arXiv
Year: 2018
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Galaxy-scale outflows powered by actively accreting supermassive black holes are routinely detected, and they have been associated both with suppression and triggering of star formation. Recent observational evidence and simulations are favouring a delayed mechanism that connects outflows and star formation
description: Authors' version, 3 pages and 1 figure, Comment published in Nature Astronomy (View-only version: http://rdcu.be/HUVf)
Crucigera irregularis Bush 1905
Creators: name: Bastida-Zavala, J. Rolando
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Polychaeta
Sabellida
Serpulidae
Crucigera
Crucigera irregularis

description: Crucigera irregularis Bush, 1905 (Figures 4A–B) Crucigera irregularis Bush, 1905: 234, pl. 25, fig. 5; pl. 29, fig. 4; pl. 33, fig. 13; pl. 39, figs. 1–5. Type locality: Juneau, Alaska. Crucigera irregularis.— ten Hove and Jansen-Jacobs, 1984: 170–176, figs. 3b, 4f–g, 5c, 8e–f, 9k–o, 10b, 11j–o, 12 (revision of the genus). Material examined. Five specimens: Alaska (USA), LACM-AHF N2127 (approx. 57º10'N, 169º40'W, Bering Sea, 20 km east of Walrus Island, Pribilof Islands, Alaska King Crab Investigation, sta. D11.41, 57–60 m); LACM-AHF N2789 (approx. 55º55'N, 161º27'W, Canoe Bay, from crab trap, Sept. 23, 1940, coll. N.L. Schmitt); LACM-AHF N10728–10729, 3 spec. (sta. 72A D2, no more data). Diagnosis. Tube smooth, thick-walled, lacks longitudinal ridges, peristomes or alveoli. Opercular peduncle smooth, white. Base of operculum with rounded dorsal process. Operculum one irregular funnel, with apex displaced to ventral side; funnel with 21–47 radii with rounded tips (Figs 4A–B). Collar with bayonet chaetae, with 2–3 blunt-short teeth and minute accessory teeth, distal blade smooth. Habitat. Depth: 57–60 m; ten Hove and Jansen-Jacobs (1984) recorded it down to 274 m. Cold waters. Distribution. North-eastern Pacific. Alaska to Oregon, USA (ten Hove & Jansen-Jacobs 1984). Remarks. Crucigera irregularis and C. zygophora are sympatric species (ten Hove & Jansen-Jacobs 1984); even, the tube of one specimen of C. irregularis (LACM-AHF N2789) is attached over the tube of C. zygophora.
description: Published as part of Bastida-Zavala, J. Rolando, 2008, Serpulids (Annelida: Polychaeta) from the Eastern Pacific, including a brief mention of Hawaiian serpulids, pp. 1-61 in Zootaxa 1722 on page 16
description: {"references": ["Bush, K. J. (1905) Tubicolous annelids of the tribes Sabellides and Serpulides from the Pacific Ocean. In: Harriman Alaska Expedition 12. With cooperation of Washington Academy of Sciences, Doubleday, Page & Co., New York, pp. 169 - 346.", "Imajima, M. & ten Hove, H. A. (1984) Serpulinae (Annelida, Polychaeta) from the Truk Islands, Ponape and Majuro Atoll, with some other new Indo-Pacific records. Proceedings of the Japanese Society Systematic Zoology, 27, 35 - 66."]}
Additional file 1: of Pilot testing of the Becoming Breastfeeding Friendly toolbox in Ghana
Creators: name: Richmond Aryeetey
name: Hromi-Fiedler, Amber
name: Adu-Afarwuah, Seth
name: Esi Amoaful
name: Gifty Ampah
name: Gatiba, Marian
name: Akosua Kwakye
name: Otoo, Gloria
name: Gyikua Plange-Rhule
name: Sagoe-Moses, Isabella
name: Selenje, Lilian
name: PĂŠrez-Escamilla, Rafael
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Appendix S1. Benchmark scores. This table presents the benchmark scores as well as gear total scores generated by the Becoming Breastfeeding Friendly Country committee in Ghana. (DOCX 18 kb)
Hyalopomatus mironovi Kupriyanova 1993
Creators: name: Bastida-Zavala, J. Rolando
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Polychaeta
Sabellida
Serpulidae
Hyalopomatus
Hyalopomatus mironovi

description: Hyalopomatus mironovi Kupriyanova, 1993 (Figures 5I–J) Hyalopomatus mironovi Kupriyanova, 1993: 148–150, figs. 2a–h. Type locality: 45º14'N, 155º12'E, Kurile-Kamtchatka Trench, North-eastern Pacific. Material examined. Nine specimens (revised by H.A. ten Hove): California (USA), LACM-AHF s.n., ZMA s.n. (34º42'N, 123º00'W, 220 km off California, Alvin dive 2831, 2913, 2915, FVGR, 4,100 m, Sept. 20, 1994, Feb. 16, 1995, April 23 and 25, 1995, coll. S. Beaulieu). Diagnosis. Tube shining white, smooth, without ornamentation (Fig. 5I). Opercular peduncle smooth. Operculum pear-shaped with distal convex plate (Fig. 5J). Six thoracic chaetigers. Collar with chaetae finand-blade, with basal denticulate expansion and smooth limb and distinct gap between distal limb and basal expansion. " Apomatus " chaetae absent. Thoracic uncini with multiple rows of teeth and gouged peg. Habitat. Depth: 4,100 m. Bathyal. On stalks of glass sponges of the genus Hyalonema, co-occurring with Bathyvermilia kupriyanovae n. sp. (cf. Beaulieu 2001b). Distribution. North Pacific. Kurile-Kamtchatka Trench (Kupriyanova 1993) and off California (USA). Remarks. The observations of the specimens of H. mironovi were made by Harry A. ten Hove (pers. comm.).
description: Published as part of Bastida-Zavala, J. Rolando, 2008, Serpulids (Annelida: Polychaeta) from the Eastern Pacific, including a brief mention of Hawaiian serpulids, pp. 1-61 in Zootaxa 1722 on page 21
description: {"references": ["Kupriyanova, E. K. (1993) Deep-water Serpulidae (Annelida, Polychaeta) from the Kurile-Kamchatka Trench: 2. Genera Bathyditrupa, Bathyvermilia and Protis. Zoological Zhurnal, 72, 21 - 28.", "Beaulieu, S. E. (2001 b) Life on glass houses: sponge-stalk communities in the deep sea. Marine Biology, 138, 803 - 817."]}
Complete electroweak two-loop corrections to Z boson production and decay
Creators: name: Dubovyk, Ievgen
name: Freitas, Ayres
name: Gluza, Janusz
name: Riemann, Tord
name: Usovitsch, Johann
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: This article presents results for the last unknown two-loop contributions to the $Z$-boson partial widths and $Z$-peak cross-section. These are the so-called bosonic electroweak two-loop corrections, where "bosonic" refers to diagrams without closed fermion loops. Together with the corresponding results for the $Z$-pole asymmetries $A_l, A_b$, which have been presented earlier, this completes the theoretical description of $Z$-boson precision observables at full two-loop precision within the Standard Model. The calculation has been achieved through a combination of different methods: (a) numerical integration of Mellin-Barnes representations with contour rotations and contour shifts to improve convergence; (b) sector decomposition with numerical integration over Feynman parameters; (c) dispersion relations for sub-loop insertions. Numerical results are presented in the form of simple parameterization formulae for the total width, $Γ_{\rm Z}$, partial decay widths $Γ_{e,μ},Γ_τ,Γ_ν,Γ_{u},Γ_{c},Γ_{d,s},Γ_{b}$, branching ratios $R_l,R_c,R_b$ and the hadronic peak cross-section, $σ_{\rm had}^0$. Theoretical intrinsic uncertainties from missing higher orders are also discussed.
description: 10 pages
Search for the Invisible Decay of $\jpsi$ in $ψ(2S)\toπ+π^-J/ψ$
Creators: name: Ablikim, M.
name: Bai, J. Z.
Publisher: name: arXiv
Year: 2007
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: Using 14.0 million $ψ(2S) events collected with the BES-II detector, a search for the decay of the $\jpsi$ to an invisible final state in $\psipto$ is performed. The $\jpsi$ peak in the distribution of mass recoiling against the $π^+π^-$ is used to tag $ψ$ invisible decay. No signal is found, and an upper limit at the 90% confidence level is determined to be $1.2\times 10^{-2}$ for the ratio $\frac{{\cal B}(\jpsi\ar {invisible})}{{\cal B}(\jpsi\arμ^+μ^-)}$. This is the first search for $J/ψ$ decay to an invisible final state.
description: 5 pages, 3 figures
AGN outflows and feedback twenty years on
Creators: name: Harrison, C. M.
name: Costa, T.
name: Tadhunter, C. N.
name: Flütsch, A.
name: Kakkad, D.
name: Perna, M.
name: Vietri, G.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: It is the twentieth anniversary of the publication of the seminal papers by Magorrian et al. and Silk & Rees which, along with other related work, ignited an explosion of publications connecting active galactic nuclei (AGN)-driven outflows to galaxy evolution. With a surge in observations of AGN outflows, studies are attempting to directly test AGN feedback models using the outflow properties. With a focus on outflows traced by optical and CO emission lines, we discuss significant challenges which greatly complicate this task from both an observational and theoretical perspective. We highlight observational uncertainties involved, and the assumptions required, when deriving kinetic coupling efficiencies (i.e., outflow kinetic power as a fraction of AGN luminosity) from typical observations. Based on recent models we demonstrate that extreme caution should taken when comparing observationally-derived kinetic coupling efficiencies to coupling efficiencies from fiducial feedback models.
description: Authors' version (all referee comments addressed). 7 pages + references. Published in Nature Astronomy
Central Engine-Powered Bright X-ray Flares in Short Gamma-Ray Bursts: A Hint of Black Hole-Neutron Star Merger?
Creators: name: Mu, Hui-Jun
name: Gu, Wei-Min
name: Mao, Jirong
name: Hou, Shu-Jin
name: Lin, Da-Bin
name: Liu, Tong
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Short gamma-ray bursts may originate from the merger of double neutron stars (NS) or that of a black hole (BH) and an NS. We propose that the bright X-ray flare related to the central engine reactivity may hint a BH-NS merger, since such a merger can provide more fall-back materials and therefore a more massive accretion disk than the NS-NS merger. Based on the observed 49 short bursts with Swift/X-ray Telescope follow-up observations, we find that three bursts have bright X-ray flares, among which three flares from two bursts are probably related to the central engine reactivity. We argue that these two bursts may originate from the BH-NS merger rather than the NS-NS merger. Our suggested link between the central engine-powered bright X-ray flare and the BH-NS merger event can be checked by the future gravitational wave detections from advanced LIGO and Virgo.
description: 15 pages, 6 figures, accepted for publication in ApJ
Additional file 1: of Personalised relaxation practice to improve sleep and functioning in patients with chronic fatigue syndrome and depression: study protocol for a randomised controlled trial
Creators: name: Macnamara, Claire
name: Cvejic, Erin
name: Parker, Gordon
name: Lloyd, Andrew
name: Lee, Gina
name: Beilharz, Jessica
name: Vollmer-Conna, Ute
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Biotechnology
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Standard Protocol Items: Recommendations for Interventional Trials (SPIRIT) 2013 Checklist: recommended items to address in a clinical trial protocol. (DOC 122 kb)
title: ADCO, Cartulaire de Cîteaux pour les possessions de Dijon et du Dijonnais (XVe siècle), Cart. 175 (11 H 479), 115 folios, f. 0059
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2017
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Cartulaire de Cîteaux pour les possessions de Dijon et du Dijonnais (XVe siècle), Archives départementales de la Côte-d'Or, Cart. 175 (11 H 479), 115 folios, f. 0059, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de Cîteaux pour les possessions de Dijon et du Dijonnais (XVe siècle), Archives départementales de la Côte-d'Or, Cart. 175 (11 H 479), 115 folios, f. 0059, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Precise predictions for mt, Vcb and tan
Creators: name: Anderson, Greg W.
name: Raby, Stuart
name: Dimopoulos, Savas
name: Hall, Lawrence
Publisher: name: arXiv
Year: 1992
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The fermion mass and mixing angle predictions of a recently proposed framework are investigated for large b and $τ$ Yukawa couplings. A new allowed region of parameters is found for this large $\tan β$ case. The two predictions which are substantially altered, $m_t$ and $\tan β$, are displayed, including the dependence on the inputs $|V_{cb}|$, $m_c$, $m_b$ and $α_s$. A simple restriction on this framework yields an additional prediction, for $|V_{cb}|$. If the b,t, and $τ$ Yukawas are equal at the GUT scale then $|\Vcb|$ is predicted and the top quark mass is constrained to lie in the range $\mt = 179. \pm 4.$ GeV.
description: (beta), 13 pages pages of text plus figures and captions. OHSTPY-HEP-92-018, LBL-332817, UCB-PTH-92/28, Stanford-92-25
Hydroides glandifer Rioja 1941
Creators: name: Bastida-Zavala, J. Rolando
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Polychaeta
Sabellida
Serpulidae
Hydroides
Hydroides glandifer

description: Hydroides glandifer Rioja, 1941 (Figure 6J) Hydroides glandiferum Rioja, 1941: 172–174, pl. 4, figs. 10–14. Type locality: Acapulco, Guerrero, Mexico (type specimens lost). Hydroides glandifer.— Bastida-Zavala and ten Hove, 2003b: 89, figs. 12A–M (revision of the genus from Eastern Pacific). Material examined. One specimen: Oaxaca (Mexico), UMAR-Poly 66 (15º51'N, 97º04'W, Puerto Escondido, on Spondylus calcifer, M14, 6– 10 m, July 4, 2004, coll. SS). Diagnosis. For a revised description see Bastida-Zavala and ten Hove (2003b). Habitat. Depth: 4– 17 m. On dead coral Pocillopora and on spiny oyster Spondylus calcifer. Distribution. Tropical Eastern Pacific. Baja California Sur to Oaxaca (Mexico) (Bastida-Zavala & ten Hove 2003b).
description: Published as part of Bastida-Zavala, J. Rolando, 2008, Serpulids (Annelida: Polychaeta) from the Eastern Pacific, including a brief mention of Hawaiian serpulids, pp. 1-61 in Zootaxa 1722 on page 26
description: {"references": ["Bastida-Zavala, J. R. & ten Hove, H. A. (2003 b) Revision of Hydroides Gunnerus, 1768 (Polychaeta: Serpulidae) from the Eastern Pacific Region and Hawaii. Beaufortia, 53, 67 - 110."]}
Diffuse Molecular Clouds and the Molecular Interstellar Medium from 13CO Observations of M33
Creators: name: Wilson, C. D.
name: Walker, C. E.
Publisher: name: arXiv
Year: 1994
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We have obtained 12CO and 13CO J=1-0 observations of the nearby spiral galaxy M33 to try to resolve the long-standing discrepancy between 12CO/13CO line ratios measured in Galactic giant molecular clouds and external galaxies. Interferometer maps of the molecular cloud MC20 give a 12CO/13CO line ratio of 7.5+/-2.1, which agrees reasonably well with the line ratio measured in Galactic giant molecular clouds. In contrast, the 12CO/13CO line ratio obtained from single dish data is 10.0+/-0.9, significantly higher than Galactic values but in good agreement with line ratios measured in other galaxies. The interferometer map of MC20 reveals that the cloud has similar spatial and velocity extents in the two lines, and thus the high single dish line ratio cannot be due to different filling factors in the two lines. In addition, the single dish data show no evidence for significant variations in the line ratio with metallicity, which eliminates abundance changes as the explanation for the high single dish line ratio. We conclude that the high 12CO/13CO line ratio s observed in M33, and in the disks of spiral galaxies in general, are due to the presence of a population of diffuse molecular clouds. The lower limit to the fraction of the total 12CO emission from M33 that originates in the diffuse clouds is 30+/-30%, while the upper limit is ~60%.
description: 16 pages + 9 figures, uuencoded compressed postscript file
Questions and challenges of what powers galactic outflows in active galactic nuclei
Creators: name: Wylezalek, Dominika
name: Morganti, Raffaella
Publisher: name: arXiv
Year: 2018
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Different mechanisms can drive outflows in active galactic nuclei (AGN), but it is often unclear which mechanism dominates, if any. To quantify the impact of AGN feedback on galaxy evolution, the driving mechanism of outflows must be better understood.
description: Authors' version of Nature Astronomy Comment. View-only version of full text publicly available at this link: http://rdcu.be/HUU4
Search for transient ultralight dark matter signatures with networks of precision measurement devices using a Bayesian statistics method
Creators: name: Roberts, B. M.
name: Blewitt, G.
name: Dailey, C.
name: Derevianko, A.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: Atomic Physics (physics.atom-ph)
subject: FOS: Physical sciences

description: We analyze the prospects of employing a distributed global network of precision measurement devices as a dark matter and exotic physics observatory. In particular, we consider the atomic clocks of the Global Positioning System (GPS), consisting of a constellation of 32 medium-Earth orbit satellites equipped with either Cs or Rb microwave clocks and a number of Earth-based receiver stations, some of which employ highly-stable H-maser atomic clocks. High-accuracy timing data is available for almost two decades. By analyzing the satellite and terrestrial atomic clock data, it is possible to search for transient signatures of exotic physics, such as "clumpy" dark matter and dark energy, effectively transforming the GPS constellation into a 50,000km aperture sensor array. Here we characterize the noise of the GPS satellite atomic clocks, describe the search method based on Bayesian statistics, and test the method using simulated clock data. We present the projected discovery reach using our method, and demonstrate that it can surpass the existing constrains by several order of magnitude for certain models. Our method is not limited in scope to GPS or atomic clock networks, and can also be applied to other networks of precision measurement devices.
description: See also Supplementary Information located in ancillary files
An Investigation of Dysregulated Neutrophil Activity in Alpha-1 Antitrypsin Deficiency
Creators: name: Landers, Sarah A.
Publisher: name: Royal College of Surgeons in Ireland
Year: 2019
Subjects: Uncategorized

description: Alpha-1 antitrypsin (AAT) deficiency (AATD) is characterised by excessive neutrophil degranulation and a protease: anti-protease imbalance leading to premature emphysema. Current specialised treatment for AATD consists of once weekly infusion of plasma purified AAT. Neutrophil degranulation is under the control of small GTP-binding proteins, including Ras-related C3 botulinum toxin substrate 2 (Rac2). The molecular basis for aberrant neutrophil degranulation in AATD has not been elucidated to date. The aim of this study was to fully characterise neutrophil degranulation in AATD and to determine the effects of AAT augmentation therapy on the AATD neutrophil. In this study, we examined degranulation by AATD neutrophils by Western blotting. This revealed a 3-fold increase in levels of myeloperoxidase (MPO), human cathelicidin antimicrobial protein (hCAP-18) and matrix metalloprotease-9 (MMP-9), markers of primary, secondary and tertiary granules, respectively (p=0.023, p=0.036 and p=0.042, respectively). Excessive active Rac2 content of 239% was confirmed in AATD neutrophils using a Rac2 activation assay (p=0.016). In addition, fluorescence resonance energy transfer (FRET) and a cytochrome c reduction assay demonstrated elevated membrane-bound neutrophil elastase (NE) on AATD neutrophils (p=0.034) and a 107% increase in superoxide (O2-) production by NE-stimulated neutrophils (p=0.011), respectively. Furthermore, we have identified a novel pathway of neutrophil reactive oxygen species (ROS) production via activation of trans-membrane protease activated receptor 2 (PAR2) by NE and we have demonstrated the ability of exogenous AAT to correct O2- release by NE-stimulated neutrophils in-vitro (63.3% reduction, p=0.008). Most importantly, this study confirmed for the first time that AAT augmentation therapy not only normalised excessive degranulation patterns but also resulted in a 75% decrease in elevated Rac2 activity by AATD neutrophils assessed by Western blotting ex-vivo (p=0.03). In conclusion, this study demonstrated the ability of AAT to regulate aberrant degranulation by AATD neutrophils, supporting our hypothesis of the ability of AAT to restore protease: anti-protease balance and highlighted a further dimension to the benefits of AAT augmentation therapy for our AATD patients.
Hydroides ochoterena Rioja 1941
Creators: name: Bastida-Zavala, J. Rolando
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Polychaeta
Sabellida
Serpulidae
Hydroides
Hydroides ochoterena

description: Hydroides ochoterena Rioja, 1941 (Figure 6N) Hydroides ochotereana Rioja, 1941: 164–167, pl. 2, figs. 1–12; pl. 3, fig. 1; pl. 4, fig. 16. Type locality: Acapulco, Guerrero, Mexico (type specimens lost). Hydroides ochoterena.— Bastida-Zavala and ten Hove, 2003b: 95–97, figs. 17A–M (revision of the genus from Eastern Pacific). Material examined. Seven specimens: Guerrero (Mexico), SV-pc, 6 spec. (16º50'33"N, 99º54'39"W, Punta Manzanillo, Acapulco, Aug. 20, 1988, coll. SISV). Oaxaca (Mexico), UMAR-Poly 68 (15º40'54"N, 96º27'55"W, La Boquilla, Puerto Angel, on bivalve shells, 6–10 m, Nov., 2003, coll. SS). Diagnosis. For a revised description see Bastida-Zavala and ten Hove (2003b). Habitat. Depth: 0–10 m. On rocks and bivalve shells. Distribution. Tropical Eastern Pacific. From Guerrero (Mexico) to Colombia (Bastida-Zavala & ten Hove 2003b).
description: Published as part of Bastida-Zavala, J. Rolando, 2008, Serpulids (Annelida: Polychaeta) from the Eastern Pacific, including a brief mention of Hawaiian serpulids, pp. 1-61 in Zootaxa 1722 on page 28
description: {"references": ["Bastida-Zavala, J. R. & ten Hove, H. A. (2003 b) Revision of Hydroides Gunnerus, 1768 (Polychaeta: Serpulidae) from the Eastern Pacific Region and Hawaii. Beaufortia, 53, 67 - 110."]}
Nicolai Maps for Quantum Cosmology
Creators: name: Graham, R.
name: Luckock, H.
Publisher: name: arXiv
Year: 1993
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We construct Nicolai maps for $N=2$ supersymmetric extensions of minisuperspace models. It is shown that Nicolai maps exist for only a very restricted set of states. In the models considered these are the two states corresponding to the empty and the filled fermion sectors. The form of the Nicolai maps in these sectors is given explicitly, and it is shown that they have a natural stochastic interpretation. This result also suggests a probabilistic interpretation of the wave function.
description: 17 pages, Latex, Sydney University Maths Report 93-26
Additional file 1: of Hepatitis B virus infection among pregnant women in Ethiopia: a systematic review and Meta-analysis of prevalence studies
Creators: name: Kindie Kebede
name: Dejene Abateneh
name: Alemayehu Belay
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Searching steps for PubMed. (DOCX 11 kb)
Hydroides sanctaecrucis Kroyer 1863
Creators: name: Bastida-Zavala, J. Rolando
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Polychaeta
Sabellida
Serpulidae
Hydroides
Hydroides sanctaecrucis

description: Hydroides sanctaecrucis Krøyer [in] Mörch, 1863 (Figure 6R) Hydroides (Eucarphus) sanctae-crucis Krøyer [in] Mörch, 1863: 378–379, pl. 11, fig. 12. Type locality: Saint Croix, Lesser Antilles. Hydroides sanctaecrucis.— Bastida-Zavala and ten Hove, 2003b: 101–102, figs. 19P–Q (revision of the genus from Eastern Pacific). Material examined. Two specimens: Oaxaca (Mexico), UMAR-Poly 70, 2 spec. (15º45'12"N, 96º07'46"W, Santa Cruz bay, Huatulco, on pier pilots, 0–1 m, Nov. 12, 2003, coll. PZ). Diagnosis. For a revised description see Bastida-Zavala and ten Hove (2003b). Habitat. Depth: 0–1 m. Rocks. Salinity 19–37‰. Fouling species. Distribution. Amphi-American. Gulf of Mexico, Eastern U.S.A. and Caribbean Sea; Hawaii, Oaxaca (Mexico) and Panama (Bastida-Zavala & ten Hove 2003a-b). Hydroides sanctaecrucis is an invasive species in Northern Australia and Singapore (Lewis et al. 2006). Remarks. Hydroides sanctaecrucis is a ship-transported serpulid that presumably colonized the Pacific of Panama and Oaxaca relatively recent, after the building the tourist complex of Huatulco, Oaxaca, Mexico, 20 years ago. Thirty years ago Long (1974) recorded the species from Hawaii. Recently it was recorded as an invasive species in Northern Australia and Singapore, on fouled hulls of ships, apparently restricted to marinas and harbours (Lewis et al. 2006). The Pacific localities recorded here support Long's (1974) record of this taxon from Hawaii.
description: Published as part of Bastida-Zavala, J. Rolando, 2008, Serpulids (Annelida: Polychaeta) from the Eastern Pacific, including a brief mention of Hawaiian serpulids, pp. 1-61 in Zootaxa 1722 on page 29
description: {"references": ["Morch, O. A. L. (1863) Revisio critica Serpulidarum. Et bidrag til roromenes naturhistorie. Naturhist. Tidskr. Henrik Kroyer, Kobenhavn, 3, 1, pp. 347 - 470.", "Bastida-Zavala, J. R. & ten Hove, H. A. (2003 b) Revision of Hydroides Gunnerus, 1768 (Polychaeta: Serpulidae) from the Eastern Pacific Region and Hawaii. Beaufortia, 53, 67 - 110.", "Lewis, J. A., Watson, C. & ten Hove, H. A. (2006) Establishment of the Caribbean serpulid tubeworm Hydroides sanctaecrucis Kroyer [in] Morch, 1863, in northern Australia. Biological Invasions, 8: 665 - 671.", "Long, E. R. (1974) Marine fouling studies off Oahu, Hawaii. The Veliger, 17, 23 - 36."]}
Additional file 1 of Efficacy of corticosteroids for hand osteoarthritis - a systematic review and meta-analysis of randomized controlled trials
Creators: name: Estee, Mahnuma Mahfuz
name: Cicuttini, Flavia M.
name: Page, Matthew J.
name: Butala, Anant D.
name: Wluka, Anita E.
name: Hussain, Sultana Monira
name: Wang, Yuanyuan
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 1: Supplementary Table 1. Search strategy for systematic review in Ovid MEDLINE(R) and Epub Ahead of Print, In-Process, In-Data-Review & Other Non-Indexed Citations, Daily and Versions(R)/Embase/Cochrane, Ovid Embase Classic+Embase, Ovid EBM Reviews - Cochrane Central Register of Controlled Trials. Supplementary Table 2. Overview of raw data for studies evaluating oral corticosteroids for all outcomes at all time points. Supplementary Table 3. Overview of raw data for studies evaluating intra-articular corticosteroids for all outcomes at all time points. Supplementary Table 4. Search of clinical trial registers and registries for trials with Completed or Unknown status that are not published. Supplementary Table 5. Rob Me assessment for random effect meta-analysis of the effect of oral corticosteroid vs placebo on pain at short term (4-6 weeks). Supplementary Table 6. Rob Me assessment for random effect meta-analysis of the effect of intra-articular corticosteroid vs placebo on pain at short term (4-6 weeks). Supplementary Table 7. GRADE assessment for random effect meta-analysis of the effect of oral corticosteroid vs placebo on pain at short term (4-6 weeks). Supplementary Table 8. GRADE assessment for random effect meta-analysis of the effect of intra-articular corticosteroid vs placebo on pain at short term (4-6 weeks). Supplementary Figure 1. Risk of bias assessment using RoB 2 tool considering patient reported pain and functional outcome. Supplementary Figure 2. Random effects meta-analysis of the standard mean difference in stiffness, based on oral corticosteroid or placebo at 4-6 weeks.
Hydroides trompi Bastida-Zavala & ten Hove 2003
Creators: name: Bastida-Zavala, J. Rolando
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Polychaeta
Sabellida
Serpulidae
Hydroides
Hydroides trompi

description: Hydroides trompi Bastida-Zavala & ten Hove, 2003 (Figure 6U) Hydroides trompi Bastida-Zavala and ten Hove, 2003b: 104–108, figs. 22A–Q, 23. Type locality: Miraflores Locks, Western Panama. Material examined. Five specimens: Oaxaca (Mexico), UMAR-Poly 72, 5 spec. (15º51'N, 97º04'W, Puerto Escondido, on Spondylus calcifer, M14, 6– 10 m, July 4, 2004, coll. SS). Diagnosis. For a revised description see Bastida-Zavala and ten Hove (2003b). Habitat. Depth: 2–3 m. On dead corals, on spiny oyster Spondylus calcifer, on cobbles and sand. Distribution. Tropical Eastern Pacific. Gulf of California, Oaxaca (México) and Panama (Bastida-Zavala & ten Hove 2003b).
description: Published as part of Bastida-Zavala, J. Rolando, 2008, Serpulids (Annelida: Polychaeta) from the Eastern Pacific, including a brief mention of Hawaiian serpulids, pp. 1-61 in Zootaxa 1722 on page 30
description: {"references": ["Bastida-Zavala, J. R. & ten Hove, H. A. (2003 b) Revision of Hydroides Gunnerus, 1768 (Polychaeta: Serpulidae) from the Eastern Pacific Region and Hawaii. Beaufortia, 53, 67 - 110."]}