cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 5 of Extracellular vesicles shed from gastric cancer mediate protumor macrophage differentiation
Creators: name: Atene Ito
name: Kagawa, Shunsuke
name: Sakamoto, Shuichi
name: Kuwada, Kazuya
name: Kajioka, Hiroki
name: Yoshimoto, Masashi
name: Kikuchi, Satoru
name: Kuroda, Shinji
name: Yoshida, Ryuichi
name: Tazawa, Hiroshi
name: Toshiyoshi Fujiwara
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Cancer

description: Additional file 5: Figure S5. The uncropped full-length gels and blots for Fig. 1e. Figure S6. The uncropped full-length gels and blots for Fig. 2c upper. Figure S7. The uncropped full-length gels and blots for Fig. 2c lower. Figure S8. The uncropped full-length gels and blots for Fig. 4a. Figure S9. The uncropped full-length gels and blots for Fig. 4b. Figure S10. The uncropped full-length gels and blots for Fig. 4c. Figure S11. The uncropped full-length gels and blots for Fig. 5c. Figure S12. The uncropped full-length gels and blots for Fig. 5d. Figure S13. The uncropped full-length gels and blots for Fig. S2C upper. Figure S14. The uncropped full-length gels and blots for Fig. S2C lower.
A consistent solution for the velocity field and mass-loss rate of massive stars
Creators: name: Müller, Patrick E.
name: Vink, Jorick S.
Publisher: name: arXiv
Year: 2008
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Stellar winds are an important aspect of our understanding of the evolution of massive stars and their input into the interstellar medium. Here we present solutions for the velocity field and mass-loss rates for stellar outflows as well as for the case of mass accretion through the use of the so-called Lambert W-function. For the case of a radiation-driven wind, the velocity field is obtained analytically using a parameterised description for the line acceleration that only depends on radius, which we obtain from Monte-Carlo multi-line radiative transfer calculations. In our form of the equation of motion the critical point is the sonic point. We also derive an approximate analytical solution for the supersonic flow which closely resembles our exact solution. For the simultaneous solution of the mass-loss rate and velocity field, we describe a new iterative method. We apply our theoretical expressions and our iterative method to the stellar wind from a typical O5-V main sequence star, and find good agreement with empirical values. Our computations represent a self-consistent mass-loss calculation including the effect of multi-line scattering for an O-type star, opening up the possibility of applying Monte Carlo mass-loss calculations in regions of the Universe for which empirical constraints cannot be readily obtained.
description: Accepted for publication in A&A, 17 pages, 11 figures, 5 tables
Behavioural virology research : the cognitive and perceptual-motor performance of chronic primarily asymptomatic Hepatitis C patients
Creators: name: Hale, R
Publisher: name: University Of Tasmania
Year: 2023

description: It is commonly believed that people perform less efficiently when suffering from viral illnesses such as colds or influenza, but there is a scarcity of both conclusive research and replicated data providing scientific evidence for this. The current review gives an appraisal of research into the cognitive effects of viral illnesses and their implications for future research into the hepatitis C virus (HCV), which has been neglected so far in the behavioural virology area. The natural history and aetiology of HCV, including coverage of modes of transmission for chronic and acute HCV and their implications for experimental investigations are also discussed. Finally, there is a summary detailing the importance of behavioural research into HCV and providing suggestions for future studies in the area.
Photon emission from out of equilibrium dissipative parton plasma
Creators: name: Bhatt, Jitesh R.
name: Sreekanth, V.
Publisher: name: arXiv
Year: 2009
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Using the second order Israel-Stewart hydrodynamics we discuss the effect of viscosity on photon production in a parton plasma created in relativistic heavy ion collisions. We find that photon production rates can enhance by several factors due to the viscous effect in a chemically nonequilibrated plasma.
description: 6 pages + 4 figures
Additional file 6 of Extracellular vesicles shed from gastric cancer mediate protumor macrophage differentiation
Creators: name: Atene Ito
name: Kagawa, Shunsuke
name: Sakamoto, Shuichi
name: Kuwada, Kazuya
name: Kajioka, Hiroki
name: Yoshimoto, Masashi
name: Kikuchi, Satoru
name: Kuroda, Shinji
name: Yoshida, Ryuichi
name: Tazawa, Hiroshi
name: Toshiyoshi Fujiwara
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Cancer

description: Additional file 6: Supplementary Table. Additional information on cell lines used in the experiments.
Electrochemical aspects of D.C. electroslag remelting
Creators: name: Beynon, Gordon Thomas
Publisher: name: University of British Columbia
Year: 2011

description: It is predicted from the known ionic properties of the slags used in electroslag melting, that the D.C. melting process should be accompanied by Faradaic reactions on the slag/ingot and slag/electrode interfaces. In the present work we have determined the magnitude of the overpotentials resulting from concentration polarization at these Interfaces, for the case of pure iron in contact with CaF₂ + Al₂O₃ and CaF₂ + CaO slags. This has been carried out using a galvanos tatic pulsing technique in an electrolytic cell. The polarization overpotential existing on an electrode in an operating ESR unit has been measured essentially by the same technique. It was found that the potentials observed on melting ESR electrodes agree well with the results from the electrolytic cell. The primary anodic process is postulated to be the corrosion of iron, leading to an Fe²⁺ - saturated slag layer on the anode surface at sufficiently high current densities. The cathodic process is suggested to be the Faradaic reduction of Al³⁺ or Ca²⁺, to produce a concentration of [Al][sub Fe] or (Ca)[sub slag] in the cathode interface region. The concentration polarization behaviour of other pure electrode materials (Cr, Ni, Co) was also investigated in CaF₂ + Al₂O₃ slags. For these materials, it has been postulated that the primary anodic process is the corrosion of the metal which again leads to interface saturation by the appropriate metal ions. The concentration polarization behaviour of iron alloy electrodes (Fe-Cr, Fe-C) was also investigated. It was found that the more easily oxidizable alloying elements are preferentially removed from these alloys when they are anodically polarized. At very high current densities both the anodic and cathodic processes may convert to arcs, leading to process instability. The chemical and thermal phenomena associated with D.C. ESR were studied by making ingots from pure electrode materials and iron-alloy electrode materials. Chemical effects which include metal oxidation and possible alloy loss were explained in terms of the Faradaic reaction mechanisms proposed in the electrolytic cell studies. Thermal effects were also explained on the same basis. It was concluded that electrochemical reaction products were responsible for the formation of large numbers of small oxide inclusions in the pure metals. In the case of alloy materials, electrochemically produced oxidation resulted in significant losses of alloy components during melting.
title: Ð Ð°Ð·ÑÐ°Ð±Ð¾ÑÐºÐ° ÑÐµÑ Ð½Ð¾Ð»Ð¾Ð³Ð¸Ð¸ Ð¸ Ð¼Ð¾Ð´ÐµÐ»Ð¸ÑÐ¾Ð²Ð°Ð½Ð¸Ðµ Ð¿ÑÐ¾ÑÐµÑÑÐ° Ñ Ð¾Ð»Ð¾Ð´Ð½Ð¾Ð¹ Ð¾Ð±ÑÐµÐ¼Ð½Ð¾Ð¹ ÑÑÐ°Ð¼Ð¿Ð¾Ð²ÐºÐ¸ Ð´ÐµÑÐ°Ð»Ð¸ "Ð¡Ð¾Ð»Ð½ÐµÑÐ½Ð°Ñ ÑÐµÑÑÐµÑÐ½Ñ"
title: Ð¼Ð°Ð³Ð¸ÑÑÐµÑÑÐºÐ°Ñ Ð´Ð¸ÑÑÐµÑÑÐ°ÑÐ¸Ñ
titleType: Subtitle
Creators: name: ÐÑÑÐ°Ð¼Ð°Ð´ÑÐ»Ð»Ð¸Ð½Ð°, ÐÐ»Ð¸Ð½Ð°
Publisher: name: Ð¡Ð°Ð½ÐºÑ-ÐÐµÑÐµÑÐ±ÑÑÐ³ÑÐºÐ¸Ð¹ Ð¿Ð¾Ð»Ð¸ÑÐµÑÐ½Ð¸ÑÐµÑÐºÐ¸Ð¹ ÑÐ½Ð¸Ð²ÐµÑÑÐ¸ÑÐµÑ ÐÐµÑÑÐ° ÐÐµÐ»Ð¸ÐºÐ¾Ð³Ð¾
Year: 2016
Subjects: ÐÑÐ´Ð°Ð²Ð»Ð¸Ð²Ð°Ð½Ð¸Ðµ Ð¼ÐµÑÐ°Ð»Ð»Ð¾Ð²
Ð¨ÑÐ°Ð¼Ð¿Ð¾Ð²ÐºÐ° Ð¼ÐµÑÐ°Ð»Ð»Ð¾Ð² Ñ Ð¾Ð»Ð¾Ð´Ð½Ð°Ñ
ÐÐ¾Ð¼Ð¿ÑÑÑÐµÑÐ½Ð¾Ðµ Ð¼Ð¾Ð´ÐµÐ»Ð¸ÑÐ¾Ð²Ð°Ð½Ð¸Ðµ
ÐÐ¾Ð½ÐµÑÐ½ÑÑ ÑÐ»ÐµÐ¼ÐµÐ½ÑÐ¾Ð² Ð¼ÐµÑÐ¾Ð´
ÐÐµÑÐ°Ð»Ð¸ Ð¼Ð°ÑÐ¸Ð½

description: Ð Ð¼Ð°Ð³Ð¸ÑÑÐµÑÑÐºÐ¾Ð¹ Ð´Ð¸ÑÑÐµÑÑÐ°ÑÐ¸Ð¸ Ð±ÑÐ» Ð¿ÑÐ¾Ð²ÐµÐ´ÐµÐ½ Ð°Ð½Ð°Ð»Ð¸Ð· ÑÑÑÐµÑÑÐ²ÑÑÑÐ¸Ñ ÑÐµÑÐ½Ð¾Ð»Ð¾Ð³Ð¸Ð¹ Ð¸Ð·Ð³Ð¾ÑÐ¾Ð²Ð»ÐµÐ½Ð¸Ñ Ð´ÐµÑÐ°Ð»Ð¸ Â«Ð¡Ð¾Ð»Ð½ÐµÑÐ½Ð°Ñ ÑÐµÑÑÐµÑÐ½ÑÂ», ÑÐ°Ð·ÑÐ°Ð±Ð¾ÑÐ°Ð½Ñ Ð²Ð¾Ð·Ð¼Ð¾Ð¶Ð½ÑÐµ Ð²Ð°ÑÐ¸Ð°Ð½ÑÑ Ð¸Ð·Ð³Ð¾ÑÐ¾Ð²Ð»ÐµÐ½Ð¸Ñ Ð´ÐµÑÐ°Ð»Ð¸ Ð¼ÐµÑÐ¾Ð´Ð¾Ð¼ ÑÐ¾Ð»Ð¾Ð´Ð½Ð¾Ð³Ð¾ Ð²ÑÐ´Ð°Ð²Ð»Ð¸Ð²Ð°Ð½Ð¸Ñ, Ð±ÑÐ»Ð¸ Ð¿Ð¾ÑÑÑÐ¾ÐµÐ½Ñ 3D-Ð¼Ð¾Ð´ÐµÐ»Ð¸ Ð¿ÐµÑÐµÑÐ¾Ð´Ð¾Ð² Ð²Ð°ÑÐ¸Ð°Ð½ÑÐ¾Ð² ÑÐµÑÐ½Ð¾Ð»Ð¾Ð³Ð¸Ð¸, Ð±ÑÐ»Ð¾ Ð¿ÑÐ¾Ð²ÐµÐ´ÐµÐ½Ð¾ ÐºÐ¾Ð½ÐµÑÐ½Ð¾-ÑÐ»ÐµÐ¼ÐµÐ½ÑÐ½Ð¾Ðµ Ð¼Ð¾Ð´ÐµÐ»Ð¸ÑÐ¾Ð²Ð°Ð½Ð¸Ðµ Ð²Ð¾Ð·Ð¼Ð¾Ð¶Ð½ÑÑ Ð²Ð°ÑÐ¸Ð°Ð½ÑÐ¾Ð² ÑÐµÑÐ½Ð¾Ð»Ð¾Ð³Ð¸Ð¸. ÐÐ° Ð¾ÑÐ½Ð¾Ð²Ðµ ÑÐµÐ·ÑÐ»ÑÑÐ°ÑÐ¾Ð² Ð¼Ð¾Ð´ÐµÐ»Ð¸ÑÐ¾Ð²Ð°Ð½Ð¸Ñ, Ð° ÑÐ°ÐºÐ¶Ðµ Ð½Ð° Ð¾ÑÐ½Ð¾Ð²Ðµ Ð°Ð½Ð°Ð»Ð¸ÑÐ¸ÑÐµÑÐºÐ¸Ñ ÑÐ°ÑÑÐµÑÐ¾Ð² Ð±ÑÐ»Ð¸ Ð¾Ð¿ÑÐµÐ´ÐµÐ»ÐµÐ½Ñ Ð¿Ð°ÑÐ°Ð¼ÐµÑÑÑ ÑÐµÑÐ½Ð¾Ð»Ð¾Ð³Ð¸ÑÐµÑÐºÐ¾Ð³Ð¾ Ð¿ÑÐ¾ÑÐµÑÑÐ°, ÐºÐ¾ÑÐ¾ÑÑÐµ Ð¿Ð¾Ð·Ð²Ð¾Ð»Ð¸Ð»Ð¸ Ð¿Ð¾Ð´Ð¾Ð±ÑÐ°ÑÑ ÑÐ¾Ð¾ÑÐ²ÐµÑÑÑÐ²ÑÑÑÐµÐµ Ð¾Ð±Ð¾ÑÑÐ´Ð¾Ð²Ð°Ð½Ð¸Ðµ Ð¸ ÑÐ¿ÑÐ¾ÐµÐºÑÐ¸ÑÐ¾Ð²Ð°ÑÑ ÐºÐ¾Ð½ÑÑÑÑÐºÑÐ¸Ñ ÑÑÐ°Ð¼Ð¿Ð¾Ð²Ð¾Ð¹ Ð¾ÑÐ½Ð°ÑÑÐºÐ¸. ÐÑÐ¾Ð²ÐµÐ´ÐµÐ½ ÑÐ°ÑÑÐµÑ ÑÐµÑÐ½Ð¸ÐºÐ¾-ÑÐºÐ¾Ð½Ð¾Ð¼Ð¸ÑÐµÑÐºÐ¸Ñ Ð¿Ð¾ÐºÐ°Ð·Ð°ÑÐµÐ»ÐµÐ¹ ÑÐ°Ð±Ð¾ÑÑ Ð¿Ð¾ Ð¿ÑÐ¾Ð¸Ð·Ð²Ð¾Ð´ÑÑÐ²Ñ Ð´ÐµÑÐ°Ð»Ð¸ Â«Ð¡Ð¾Ð»Ð½ÐµÑÐ½Ð°Ñ ÑÐµÑÑÐµÑÐ½ÑÂ» Ð¸ Ð¿ÑÐµÐ´Ð»Ð¾Ð¶ÐµÐ½Ñ ÑÐµÐºÐ¾Ð¼ÐµÐ½Ð´Ð°ÑÐ¸Ð¸ Ð¿Ð¾ Ð¾ÑÑÐ°Ð½Ðµ ÑÑÑÐ´Ð°.
Vertex operator for the ultradiscrete KdV equation
Creators: name: Nakata, Yoichi
Publisher: name: arXiv
Year: 2009
Subjects: subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: FOS: Physical sciences

description: We propose an ultradiscrete analogue of the vertex operator in the case of the ultradiscrete KdV equation, which maps N-soliton solutions to N+1-soliton ones.
description: 7 pages, 4 figures In v2, we corrected few mistakes in mathematical expressions. In v3, we pointed out the difference between our approach and that of ref. [4]
Additional file 4 of Metal biomarker mixtures and blood pressure in the United States: cross-sectional findings from the 1999-2006 National Health and Nutrition Examination Survey (NHANES)
Creators: name: Everson, Todd M.
name: Niedzwiecki, Megan M.
name: Toth, Daniell
name: Tellez-Plaza, Maria
name: Liu, Haoran
name: Barr, Dana B.
name: Gribble, Matthew O.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Geology
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Marine Biology

description: Additional file 4: Supplemental Fig. 4. Among non-Hispanic black adults: regression tree for estimated DBP as a function of metals biomarkers in urine and blood while adjusting age, age2, sex, BMI and smoking status. Concentrations of metal biomarkers are either μg/dL blood (Pb only) or μg/g creatinine (all other metals in urine).
Groundwater Legacies: Quantifying Nitrate Accumulation in the Upper Mississippi River Basin
Creators: name: Schultz, Victor O
Publisher: name: University of Illinois at Chicago
Year: 2022
Subjects: Uncategorized

description: Nitrate is one of the most common anthropogenic contaminants found in waters of the United States. Increases in nitrate contamination are consistent with the approximately 20-fold increases in chemical N fertilizer application since the mid-20th Century. Rising nitrogen (N) loading rates at the land surface have increased the accumulation of N in surface water, soils, and groundwater. However, the total magnitude of N accumulation in aquifers of the United States remains unknown. Here we provide a first mass estimate of N stored in groundwater within the Upper Mississippi River Basin (UMRB), an area known for intensive row-crop agriculture and a major contributor to Gulf of Mexico hypoxia. Using a novel dataset of nitrate well concentration values, geographic predictors, and a machine learning algorithm, we have produced gridded predictions of nitrate concentrations ranging from the water table surface to 200m below the surface. We find that, in total, a sum on the scale of hundreds of teragrams of N is currently stored in groundwater of the UMRB. This total mass highlights the need to consider long-term groundwater N storage when trying to reduce N loading to surface water and mitigating public health risks from private wells. In addition to providing a starting point for localized studies within the UMRB, this modeling framework demonstrates Random Forest modeling as a powerful tool for estimating contaminant magnitudes on a regional scale.
A Spitzer search for cold dust within globular clusters
Creators: name: Barmby, P.
name: Boyer, M. L.
name: Woodward, C. E.
name: Gehrz, R. D.
name: van Loon, J. Th.
name: Fazio, G. G.
name: Marengo, M.
name: Polomski, E.
Publisher: name: arXiv
Year: 2008
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Globular cluster stars evolving off the main sequence are known to lose mass, and it is expected that some of the lost material should remain within the cluster as an intracluster medium (ICM). Most attempts to detect such an ICM have been unsuccessful. The Multiband Imaging Photometer for Spitzer on the Spitzer Space Telescope was used to observe eight Galactic globular clusters in an attempt to detect the thermal emission from ICM dust. Most clusters do not have significant detections at 70 microns; one cluster, NGC 6341, has tentative evidence for the presence of dust, but 90 micron observations do not confirm the detection. Individual 70 micron point sources which appear in several of the cluster images are likely to be background galaxies. The inferred dust mass and upper limits are < 4e-4 solar masses, well below expectations for cluster dust production from mass loss in red and asymptotic giant branch stars. This implies that either globular cluster dust production is less efficient, or that ICM removal or dust destruction is more efficient, than previously believed. We explore several possibilities for ICM removal and conclude that present data do not yet permit us to distinguish between them.
description: AJ in press; 30 pages with 8 figures
Additional file 6 of Metal biomarker mixtures and blood pressure in the United States: cross-sectional findings from the 1999-2006 National Health and Nutrition Examination Survey (NHANES)
Creators: name: Everson, Todd M.
name: Niedzwiecki, Megan M.
name: Toth, Daniell
name: Tellez-Plaza, Maria
name: Liu, Haoran
name: Barr, Dana B.
name: Gribble, Matthew O.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Geology
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Marine Biology

description: Additional file 6: Supplemental Fig. 6. Among non-Hispanic white adults: regression tree for estimated DBP as a function of metals biomarkers in urine and blood while adjusting age, age2, sex, BMI and smoking status. Concentrations of metal biomarkers are either μg/dL blood (Pb only) or μg/g creatinine (all other metals in urine).
Ten Years of PubMed Central
Creators: name: (:Unav)
Publisher: name: Columbia University
Year: 2010
Subjects: Information science

description: What can researchers expect next from PubMed Central? David Lipman, Director of the National Center for Biotechnology Information at the National Library of Medicine, gives an overview of the past, present, and future of the National Institutes of Health's archive of biomedical research articles. On its 10th anniversary, PubMed Central is one of the world's largest archives of freely accessible full-text journal articles. Its launch in February 2000 marked a major step toward providing greater access to the results of publicly funded research.
Additional file 5 of Metal biomarker mixtures and blood pressure in the United States: cross-sectional findings from the 1999-2006 National Health and Nutrition Examination Survey (NHANES)
Creators: name: Everson, Todd M.
name: Niedzwiecki, Megan M.
name: Toth, Daniell
name: Tellez-Plaza, Maria
name: Liu, Haoran
name: Barr, Dana B.
name: Gribble, Matthew O.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Geology
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Marine Biology

description: Additional file 5: Supplemental Fig. 5. Among Mexican-American adults: regression tree for estimated DBP as a function of metals biomarkers in urine and blood while adjusting age, age2, sex, BMI and smoking status within strata of Mexican American adults. Concentrations of metal biomarkers are either μg/dL blood (Pb only) or μg/g creatinine (all other metals in urine).
Identifying internal control genes by quantitative real-time PCR for accurate normalisation of gene expression in Gardenia jasminoides
Creators: name: Mu, Zejing
name: Du, Xiaolang
name: Wang, Xiaoyun
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Gardenia jasminoides J. Ellis. is widely used in horticulture and its fruit is heavily used in the natural pigment and traditional Chinese medicinal industries. Functional discovery and characterisation of genes in fruits generally require accurate transcript quantification. Therefore, we first identified twenty candidate genes and then set out to determine their stability in qRT-PCR assays using three software programs, i.e. geNorm (version 3.5), NormFinder (version 20), and RefFinder. The optimal number of ICGs required for qRT-PCR data normalisation was also determined. Our results indicated that two ICGs were sufficient for accurate qRT-PCR data normalisation in the organs tested. From the consensus genes of the three software programs, EIF3G and GAPDH were the top-ranked ICGs in pulp and seeds at three developmental stages, i.e. the green fruit stage, the orange fruit stage, and the red fruit stage. DEAD and 40S-S15a were the top-ranked ICGs in pulp, leaves, seeds, and stems at the red fruit stage. The reliability of the selected ICGs was confirmed through expression profile comparison of two genes, i.e. phytoene synthase and β-ring hydroxylase involved in carotenoid biosynthesis. This is the first report of ICG screening in G. jasminoides. Our results provide a basis for normalising gene expression levels and understanding of gene function in G. jasminoides.
R/V Revelle, cruise 1107, Lamon Bay, Kaohsiung to Kaohsiung, 18 May - 6 June 2011, Personnel exchange at Port Irene, Philippines on 19 May and 4 June
Creators: name: Gordon, Arnold L.
Publisher: name: Columbia University
Year: 2011
Subjects: subject: Oceanography
subject: FOS: Earth and related environmental sciences

description: The circulation within Lamon Bay (defined here as west of 124°E, south of 18°N, north of 14°N) is vigorous, with surface layer currents often between 1 and 2 kts. The Kuroshio at 18.35°N (northeastern tip of Luzon) was nearly 3 kts at the sea surface, and extended to ~350 m. Within Lamon Bay are 2 energetic gyres or dipoles that bracket a northwestward stream into the Kuroshio. These features extend to only 150-200 m. The cyclonic dipole is within the southern tier of Lamon Bay; the much more energetic anticyclonic dipole is to the north of the Kuroshio feeder stream. This sets up a bifurcation along the western boundary of Lamon Bay, near 16°-17°N, which is likely more relevant to the Kuroshio than the bifurcation near 13°N. The first occurrence of (what I would call) the Kuroshio is at the 16.5°N western boundary. The vorticity transfer linking the nascent Kuroshio to the dipoles needs to be considered in understanding the origin of the Kuroshio. The Lamon Bay dipole has a branch entering into Polillo Strait, and then exported from the shelf north of Calagua Island, introducing low salinity surface water into the Lamon Bay cyclonic dipole. Lamon Bay is a confluence of waters from different ocean regimes that then contribute to the Kuroshio. The Kuroshio off the northeastern point of Luzon is mainly drawn from North Pacific subtropical water (subtropical component of the North Equatorial Current) and western North Pacific Kuroshio recirculation. Input from the equatorial component of the North Equatorial Current, derived from the bifurcation near 13°N, is small. From continuity it is limited in the long-term to compensate for the loss of upper kilometer water form the North Pacific: Bering Strait export to the Arctic and export of North Pacific Intermediate water to the Mindanao Current; estimate: ~ 4 Sv. The Lamon Bay project mooring will provide 1-year record of the dipoles and Kuroshio feeder stream behavior; Lamon Bay 2012 cruise will provide another snapshot to test the concepts drawn from the Lamon Bay 2011 cruise.
Semi-infinite TASEP with a Complex Boundary Mechanism
Creators: name: Sonigo, Nicky
Publisher: name: arXiv
Year: 2009
Subjects: subject: Probability (math.PR)
subject: FOS: Mathematics

description: We consider a totally asymmetric exclusion process on the positive half-line. When particles enter in the system according to a Poisson source, Liggett has computed all the limit distributions when the initial distribution has an asymptotic density. In this paper we consider systems for which particles enter at the boundary according to a complex mechanism depending on the current configuration in a finite neighborhood of the origin. For this kind of models, we prove a strong law of large numbers for the number of particles entered in the system at a given time. Our main tool is a new representation of the model as a multi-type particle system with infinitely many particle types.
Observation and Polarization Measurement of B0 --> a1(1260)+ a1(1260)- Decay
Creators: name: The BABAR Collaboration
name: Aubert, B.
Publisher: name: arXiv
Year: 2009
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: We present measurements of the branching fraction B and the longitudinal polarization fraction fL for B0 -> a1(1260)+ a1(1260)- decays, with a1(1260)+/- -> π- π+ π+/-. The data sample, collected with the detector BaBar at the SLAC National Accelerator Laboratory, represents 465 10^6 produced BBbar pairs. We measure B(B0 -> a1(1260)+ a1(1260)-) x [B(a1(1260)+ -> π- π+ π+)]^2 = (11.8 \pm 2.6 \pm 1.6) 10^{-6} and fL = 0.31 \pm 0.22 \pm 0.10, where the first uncertainty is statistical and the second systematic. The decay mode is measured with a significance of 5.0 standard deviations including systematic uncertainties.
description: 7 pages, 5 postscript figures, submitted to Phys. Rev. Lett
The Poincaré series of the covariants of binary forms
Creators: name: Bedratyuk, Leonid
Publisher: name: arXiv
Year: 2009
Subjects: subject: Algebraic Geometry (math.AG)
subject: Commutative Algebra (math.AC)
subject: FOS: Mathematics
subject: 13N15, 13A50, 13F20

description: A formula for computation of the Poincaré series $P_d(z)$ of the algebra of the covariants of binary $d$-form is found. By using it, we have computed the $P_d(z)$ for $d \leq 20.$
description: 7 pages
Additional file 1 of RNF115 promotes lung adenocarcinoma through Wnt/β-catenin pathway activation by mediating APC ubiquitination
Creators: name: Wu, Xiao-Ting
name: Yu-Han Wang
name: Cai, Xiao-Yue
name: Dong, Yun
name: Cui, Qing
name: Zhou, Ya-Ning
name: Yang, Xi-Wen
name: Lu, Wen-Feng
name: Zhang, Ming
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 1: Table S1. Antibody list. Figure S1. Expressions of RNF115 protein in various cell lines. (A) RNF115 protein expressions in 16HBE cells and five LUAD cell lines. GAPDH as loading control. (B) RNF115 protein expressions in H358 or H1975 cells transfected with shRNF115 (1#, 2#, and 3#), shRNA (NC), and non-transfected cells (control) by western blotting. The loading control as GAPDH. (C) RNF115 protein expressions in H1299 cells transfected with oeRNF115, Vector, and non-transfected cells (control). The loading control as GAPDH. Figure S2. RNAi resistant mutant of RNF115 rescued the effects of RNF115 shRNA on cell proliferation and cellular metabolism in LUAD cells. H358 and H1975 cells were transfected with shRNF115 (1# and 2#) or control shRNA (shNC), and transfected with plasmids expressing RNAi resistant mutant RNF115 (RrRNA115). (A) RNF115 expression was detected by western blotting. (B) Measurement of cell proliferation based on CCK-8. (C) Extracellular acidification rates for glycolysis. (D) Oxygen consumption rates for mitochondrial respiration. **P<0.01. Figure S3. Overexpression of RNF115 promoted cell proliferation, glycolysis and mitochondrial respiration in 16HBE cells. (A) RNF115 expression was detected by western blotting. (B) Measurement of cell proliferation based on CCK-8. (C) The ratio of apoptotic cells. (D) Extracellular acidification rates for glycolysis. (E) Oxygen consumption rates for mitochondrial respiration.
Groundwater Legacies: Quantifying Nitrate Accumulation in the Upper Mississippi River Basin
Creators: name: Schultz, Victor O
Publisher: name: University of Illinois at Chicago
Year: 2021
Subjects: Uncategorized

description: Nitrate is one of the most common anthropogenic contaminants found in waters of the United States. Increases in nitrate contamination are consistent with the approximately 20-fold increases in chemical N fertilizer application since the mid-20th Century. Rising nitrogen (N) loading rates at the land surface have increased the accumulation of N in surface water, soils, and groundwater. However, the total magnitude of N accumulation in aquifers of the United States remains unknown. Here we provide a first mass estimate of N stored in groundwater within the Upper Mississippi River Basin (UMRB), an area known for intensive row-crop agriculture and a major contributor to Gulf of Mexico hypoxia. Using a novel dataset of nitrate well concentration values, geographic predictors, and a machine learning algorithm, we have produced gridded predictions of nitrate concentrations ranging from the water table surface to 200m below the surface. We find that, in total, a sum on the scale of hundreds of teragrams of N is currently stored in groundwater of the UMRB. This total mass highlights the need to consider long-term groundwater N storage when trying to reduce N loading to surface water and mitigating public health risks from private wells. In addition to providing a starting point for localized studies within the UMRB, this modeling framework demonstrates Random Forest modeling as a powerful tool for estimating contaminant magnitudes on a regional scale.
Additional file 7 of Metal biomarker mixtures and blood pressure in the United States: cross-sectional findings from the 1999-2006 National Health and Nutrition Examination Survey (NHANES)
Creators: name: Everson, Todd M.
name: Niedzwiecki, Megan M.
name: Toth, Daniell
name: Tellez-Plaza, Maria
name: Liu, Haoran
name: Barr, Dana B.
name: Gribble, Matthew O.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Geology
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Marine Biology

description: Additional file 7: Supplemental Table 1. Proportions of metals concentrations with reported values that were above the limits of detection from the 2003-2004 cycle (n=852).
Defining the Digital Humanities
Creators: name: (:Unav)
Publisher: name: Columbia University
Year: 2011
Subjects: Education, Higher
Internet

description: Digital humanities scholars are a diverse group whose work is the result of cross-pollination among humanities scholarship, computer science, and digital media. Many well-known digital humanities projects apply tools borrowed from computer science—such as data-mining or geographic information systems—to works of literature, historical documents, and other materials traditionally in the domain of the humanities. What do digital humanities scholars see as the potential of this interdisciplinary field? And what are the important theoretical and methodological contributions digital humanities can offer to both the humanities and the sciences Panelists: Daniel J. Cohen, Associate Professor of History and Director of the Center for History and New Media (CHNM) at George Mason University; Federica Frabetti, Senior Lecturer in the Communication, Media, and Culture Program at Oxford Brookes University; and Dino Buzzetti, recently retired from the Department of Philosophy at the University of Bologna.
Two distinct sequences of blue straggler stars in the globular cluster M30
Creators: name: Ferraro, F. R.
name: Beccari, G.
name: Dalessandro, E.
name: Lanzoni, B.
name: Sills, A.
name: Rood, R. T.
name: Pecci, F. Fusi
name: Karakas, A. I.
name: Miocchi, P.
name: Bovinelli, S.
Publisher: name: arXiv
Year: 2010
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Stars in globular clusters are generally believed to have all formed at the same time, early in the Galaxy's history. 'Blue stragglers' are stars massive enough that they should have evolved into white dwarfs long ago. Two possible mechanisms have been proposed for their formation: mass transfer between binary companions and stellar mergers resulting from direct collisions between two stars. Recently, the binary explanation was claimed to be dominant. Here we report that there are two distinct parallel sequences of blue stragglers in M30. This globular cluster is thought to have undergone 'core collapse', during which both the collision rate and the mass transfer activity in binary systems would have been enhanced. We suggest that the two observed sequences arise from the cluster core collapse, with the bluer population arising from direct stellar collisions and the redder one arising from the evolution of close binaries that are probably still experiencing an active phase of mass transfer.
description: Published on the 24th December 2009 issue of Nature
Additional file 1 of Multi-pathogen infections and Alzheimer’s disease
Creators: name: Vigasova, Dana
name: Nemergut, Michal
name: Liskova, Barbora
name: Damborsky, Jiri
Publisher: name: figshare
Year: 2021
Subjects: subject: Microbiology
subject: FOS: Biological sciences

description: Additional file 1 Methodology of the literature search.
The Future of Learned Societies
Creators: name: (:Unav)
Publisher: name: Columbia University
Year: 2009
Subjects: Information science
Education, Higher

description: James O'Donnell, Georgetown University Provost and Vice President for Publications of the American Philological Association, discusses the future of scholarly publishing and learned societies. Columbia University Physics professor Erick Weinberg, editor of the American Physical Society journal Physical Review D, responds. Learned societies have published the work of their members for over three hundred years and do it very well. Now, we are surrounded with huge quantities of digital information, and societies are challenged to consider afresh their motives, means, and opportunities. What should scholars do?
Optical determination of the relation between the electron-boson coupling function and the critical temperature in high T$_c$ cuprates
Creators: name: van Heumen, E.
name: Muhlethaler, E.
name: Kuzmenko, A. B.
name: Eisaki, H.
name: Meevasana, W.
name: Greven, M.
name: van der Marel, D.
Publisher: name: arXiv
Year: 2009
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We take advantage of the connection between the free carrier optical conductivity and the glue function in the normal state, to reconstruct from the infrared optical conductivity the glue-spectrum of ten different high-Tc cuprates revealing a robust peak in the 50-60 meV range and a broad con- tinuum at higher energies for all measured charge carrier concentrations and temperatures up to 290 K. We observe that the strong coupling formalism accounts fully for the known strong temperature dependence of the optical spectra of the high Tc cuprates, except for strongly underdoped samples. We observe a correlation between the doping trend of the experimental glue spectra and the critical temperature. The data obtained on the overdoped side of the phase diagram conclusively excludes the electron-phonon coupling as the main source of superconducting pairing.
description: Accepted for publication in Phys. Rev. B
THE MEASURES OF PREVENTING CORONARY HEART DISEASE
Creators: name: Dalibaev, Koniratbay
Publisher: name: Zenodo
Year: 2023

description: This article provides the main measures of understanding and preventing coronary heart disease. It covers the essential knowledge and strategies for maintaining heart health and reducing the risk of developing heart disease. The article also discusses to educate and empower readers to take control of their cardiovascular health through a range of preventive measures. According to the result of the reasearch, the preventive measures are considered as a valuable resource for individuals looking to improve their heart health and overall well-being.
Corwin's Constitution: Essays and Insights of Edward S. Corwin
Creators: name: Crews, Kenneth D.
Publisher: name: Columbia University
Year: 1986
Subjects: subject: Law
subject: FOS: Law

description: The growth of presidential powers and the expansion of federal authority in recent decades require fresh examination of Edward S. Corwin's writings and theories. His seminal studies of the president. Congress, and the Supreme Court became landmark works almost immediately upon their publication in the first half of the twentieth century. Professor Corwin's theories brought him praise and general acknowledgement as the most influential critic of the American government in his time. Indeed, his general treatises on the presidency and the Constitution remain standards long after his death in 1963. Such prominent works, however, often belie the steady flow of lesser-known publications Corwin generated between 1900 and 1960. He wrote more than twenty books, edited several others, and authored more than 400 articles, letters to editors, and book reviews. Corwin was the recognized master of the essay--whether his essays were academic or popular. He was quick to offer a legalistic and historical analysis of contemporaneous events, from income taxes and labor strikes to war powers and desegregation. Yet the essays in this book reveal a view of Corwin virtually unexplored by students of American politics, law, and history; indeed, these essays create a vision of Corwin unknown to many of his friends and close colleagues.
Inferring historical introgression with deep learning
Creators: name: Zhang, Yubo
Publisher: name: Zenodo
Year: 2023

description: Resolving the phylogenetic relationships among taxa remains a challenge in the era of big data due to the presence of genetic admixture in a wide range of organisms. Rapidly developing sequencing technologies and statistical tests enable evolutionary relationships to be disentangled at a genome-wide level, yet many of these tests are computationally intensive and rely on phased genotypes, large sample sizes, restricted phylogenetic topologies, or hypothesis testing. To overcome these difficulties, we developed a deep learning-based approach, named ERICA, for inferring genome-wide evolutionary relationships and local introgressed regions from sequence data. ERICA accepts sequence alignments of both population genomic data and multiple genome assemblies, and efficiently identifies discordant genealogy patterns and exchanged regions across genomes when compared with other methods. We further tested ERICA using real population genomic data from Heliconius butterflies that have undergone adaptive radiation and frequent hybridization. Finally, we applied ERICA to characterize hybridization and introgression in wild and cultivated rice, revealing the important role of introgression in rice domestication and adaptation. Taken together, our findings demonstrate that ERICA provides an effective method for teasing apart evolutionary relationships using whole genome data, which can ultimately facilitate evolutionary studies on hybridization and introgression.
description: Funding provided by: National Natural Science Foundation of China
Crossref Funder Registry ID: http://dx.doi.org/10.13039/501100001809
Award Number: 32170420Funding provided by: National Natural Science Foundation of China
Crossref Funder Registry ID: http://dx.doi.org/10.13039/501100001809
Award Number: 31871271
Concealed Threats: Gender Policing and Surveillance of Trans, Gender Nonconforming, and Nonbinary People
Creators: name: Stephens, Ash
Publisher: name: University of Illinois at Chicago
Year: 2022
Subjects: Uncategorized

description: Concealed Threats: Gender-Policing and the Surveillance of Transgender, Gender Nonconforming, and Nonbinary People, explores transgender, gender nonconforming, and nonbinary (TGNCNB) people’s experiences with gender-policing and surveillance through three central questions: What are TGNCNB people’s overall experiences of gender-policing and surveillance? How do these experiences vary based on race, gender identity/expression, nationality, disability, and immigration status? And how do TGNCNB people think about structural change? Arguing that the policing and surveillance of TGNCNB people traverses traditional criminal legal institutions such as law enforcement and nontraditional institutions such as the family, the purpose of this research is to offer a broader definition of policing and surveillance within the field of criminology studies, in order to bring about institutional and interpersonal change. Concealed Threats applies the methodology of critical ethnographic criminology, which includes people-based methods of interviews, ethnography, and participant observation. I use interviews with TGNCNB people who experienced gender-policing and surveillance, and participant observation within community-based organizations organized by and for gender nonconforming people of color. Using this people-based method, my research shows how race, gender identity/expression, nationality, disability, and immigration status shape experiences of policing and surveillance, as well as strategies used to assess potential risk. Beginning with the most informal institution of the family, followed by the Department of Motor Vehicles (DMV), the Transportation Security Administration (TSA), and concluding with law enforcement, Concealed Threats looks at four institutional spaces that have a gradual progression toward overt state violence.
Additional file 1 of Development of a decision support intervention for family members of adults who lack capacity to consent to trials
Creators: name: Shepherd, Victoria
name: Wood, Fiona
name: Griffith, Richard
name: Sheehan, Mark
name: Kerenza Hood
Publisher: name: figshare
Year: 2021
Subjects: subject: Information Systems
subject: FOS: Computer and information sciences

description: Additional file 1. Logic model for proxy decision support intervention.
Characterization of disease-specific genes and molecular pathways in Alzheimer’s disease and Huntington’s disease.
Creators: name: Afeefa Zainab
name: Obayashi, Takeshi
name: Kinoshita, Kengo
Publisher: name: F1000 Research Limited
Year: 2020

description: Alzheimer’s disease AD is neurodegenerative disease which is progressive in nature with alterations in function, cognition and behavior. Exact pathways or mechanisms involved in the progression are difficult to understand due to complexity. Huntington’s disease HD is another complex neurodegenerative disease often characterized by neuronal dysfunction in brain regions mainly striatum and cortex. Furthermore, AD and HD share some common symptoms including dementia, depression, and some other cognitive impairments. These similarities in symptoms are motivating factors to study both diseases and identify any common cause of disease. In this study, we have compared expression changes in human prefrontal brain samples in Alzheimer’s disease, Huntington’s disease patients with healthy control samples. Microarray dataset GSE33000 was downloaded from GEO database. The study was aimed at identifying shared genes and pathways in AD and HD. Gene Ontology and enrichment analysis revealed identification of neurotrophin signaling pathway as strongly enriched pathway which is down-regulated in both diseases. Within this pathway, brain derived neurotrphin factor BDNF  was identified as possible cause in of dementia in HD and AD. Another important result was identification of Melanoma pathway that was down-regulated in both diseases. The molecular study for down-regulation of Melanoma genes can lead to more promising results. Further study was expanded to find specific hub genes in each disease. Protein protein network analysis was performed for identifification of hub proteins. In comparison of AD Vs Healthy samples GNG2, NMU, MCHR2, NMS, GNB5, GNG3, ANXA1, GNG12,HTR5A,GABBR2 were identified as top 10 hub genes. HD Vs healthy controls revealed identification of C3AR1, C5AR1, FPR1, CXCL1, CXCL2, GNG2, NMU, ADORA3, MCHR2, NMS as hub genes. BDNF can be used as potential therapeutic and diagnostic target for cognitive loss in brain disorders as identified in this study. The study also identified that AD and HD show similar expression change in pre-frontal cortex region of brain. HD is the monogenic disease and it has the possibility to predict and identify the mutation carriers. It can be used as a model for AD for testing the efficiency of any therapeutic approaches that target shared therapeutic pathways or genes. Further studies including data from other brain regions and experimental studies can further validate our findings.
Additional file 1 of A cross-sectional study on the relationship between electronic cigarette and combustible cigarette use with obstructive sleep apnea among U.S. adults: result from NHANES 2015–2018
Creators: name: Zhu, Hong
name: Wu, Meng
Publisher: name: figshare
Year: 2023
Subjects: Medicine
Biotechnology
Biological Sciences not elsewhere classified
Marine Biology
Cancer
Science Policy
Mental Health

description: Additional file 1. Aims and Scope statement.
Gebelerin Hamilelikte Sigara Kullanımıyla ilgili Düşünceleri ve Sigara Kullanımının Bebeğe Etkisi
Creators: name: ESRA BAŞKURT
name: NURSENA SUSOY
name: SEDANUR KARAKIŞ
name: YASEMİN ÇOBAN
name: ZEYNEP M. ELBUZ
Publisher: name: Zenodo
Year: 2019
Subjects: Sigara kullanımı, Gebelikte sigara , Bebek

description: ÖZ: Amaç: Bu araştırma; Primipar ve multipar annelerin ‘’Gebelikte sigara kullanımı’’ hakkında bilgi düzeyinin ölçülmesi amacıyla planlanmıştır. Gereç ve Yöntem: Tanımlayıcı-karşılaştırmalı nitelikte olan bu araştırmanın evrenini İstanbul ilindeki primipar\multipar anneler oluşturmuştur. Araştırmanın örneklemini ise Beykoz da ikamet eden primipar\multipar anneler oluşturmuştur. Veriler; kadınların sosyo-demografik, obstetrik özelliklerini bilgi düzey sonuçlarını değerlendirmek için araştırmacılar tarafından hazırlanan soru formu ile toplanmıştır. Bulgular: Olgu ve kontrol grupları yaş (p=0.837), eğitim durumu (p=0.816), gelir düzeyi (p=0.408) gibi sosyo-demografik ve ortalama gebelik sayısı (p=1.033) gibi obstetrik-jinekolojik özellikler açısından benzerdir. Gebeliğinde sigara kullananların günde 1-5 tane sigara içtikleri belirlenmiştir. (%10.5) (min;1-max;5) Kadınlar %9.5 oranında gebelikte sigara kullanmayı azalttığını belirtmiştir. Gebelikte sigara kullanımının bebeğe olan etkilerinden %62.1 oranında akciğer fonksiyon bozukluklarını bildikleri ve bunu %24.7 oranında televizyondan öğrendiği bulgular arasındadır. Sonuç: Gebeliğinden önce sigara kullanan kadınların gebeliğini öğrendiğinde sigara kullanımını azalttığı ve sigaranın bebeğe olan etkilerinden en çok akciğer fonksiyon bozukluklarını bildiği, bu bilgileri de çoğunlukla televizyondan edindiği belirlenmiştir.
BioinfoCore @ USU: high-performance computing for bioinformatics and the challenges of big -OMICS data
Creators: name: Rousselene B. Larson
name: McCowan, Shelby
name: Kaundal, Rakesh
Publisher: name: F1000 Research Limited
Year: 2020

description: The Bioinformatics Facility at USU serves as a centralized resource for providing expert and timely bioinformatics consulting and data analysis solutions. The core offers services to investigators within and outside USU for analysis of large-scale biological datasets produced by high-throughput genomics experiments. The majority of the core’s services utilize a combination of open-source and custom-built software running through an HPC system. We have also developed customized pipelines for genomic data analysis such as RNA-Seq, Bisulfite sequencing, variant analysis and GWAS that enhance the quality of outputs. Our lab has other resources available to students and researchers, such as web hosting, programming expertise, backups, storage, and other infrastructure needs that might help with NGS
analysis. Detailed information about our services, research, manuals, and more is
available at bioinfocore.usu.edu/services/ and bioinfo.usu.edu/.