cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
QuickWave conformal FDTD modelling: electromagnetics and beyond
Creators: name: M. Celuch, M. Olszewska-Placha
Publisher: name: Zenodo
Year: 2019
Subjects: MMAMA, EU project, H2020

description: In this work, capabilities of QuickWave software in the area of materials modelling, including design of material characterisation devices, are presented.
Additional file 3: Figure S1. of Rare variant association analysis in case-parents studies by allowing for missing parental genotypes
Creators: name: Li, Yumei
name: Xiang, Yang
name: Xu, Chao
name: Shen, Hui
name: Deng, Hongwen
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Computational Biology

description: Empirical power against the sample size at the 0.05 significance level in population stratification when there are 20% non-causal variants. Note: A and B are for Z ˜ C $$ {\tilde{Z}}_C $$ , and C and D are for TDT BRV $$ {TDT}_{\mathrm{BRV}} $$ when causal variants have different effects with the same direction and causal variants have opposite effects, respectively. The sample size N=N0, N0 + 1/10 N0, N0 + 1/5 N0, N0 + 1/2 N0 with N0 = 500 denoted by 0, 1/10, 1/5, and 1/2 respectively. Ω0 + I (○), Ω0 + II (*), Ω0 + I + II (+). Figure S2. Empirical power against the sample size at the 0.05 significance level in population stratification when there are 40% non-causal variants. Note: A and B are for Z ˜ C $$ {\tilde{Z}}_C $$ , and C and D are for TDT BRV $$ {TDT}_{\mathrm{BRV}} $$ when causal variants have different effects with the same direction and causal variants have opposite effects, respectively. The sample size N=N0, N0 + 1/10 N0, N0 + 1/5 N0, N0 + 1/2 N0 with N0 = 500 denoted by 0, 1/10, 1/5, and 1/2 respectively. Ω0 + I (○), Ω0 + II (*), Ω0 + I + II (+). Figure S3. Empirical power against the sample size at the 0.05 significance level in population stratification when there are 60% non-causal variants. Note: A and B are for Z ˜ C $$ {\tilde{Z}}_C $$ , and C and D are for TDT BRV $$ {TDT}_{\mathrm{BRV}} $$ when causal variants have different effects with the same direction and causal variants have opposite effects, respectively. The sample size N=N0, N0 + 1/10 N0, N0 + 1/5 N0, N0 + 1/2 N0 with N0 = 500 denoted by 0, 1/10, 1/5, and 1/2 respectively. Ω0 + I (○), Ω0 + II (*), Ω0 + I + II (+). Figure S4. Empirical power against the sample size at the 0.05 significance level in population stratification when there are 80% non-causal variants. Note: A and B are for Z ˜ C $$ {\tilde{Z}}_C $$ , and C and D are for TDT BRV $$ {TDT}_{\mathrm{BRV}} $$ when causal variants have different effects with the same direction and causal variants have opposite effects, respectively. The sample size N=N0, N0 + 1/10 N0, N0 + 1/5 N0, N0 + 1/2 N0 with N0 = 500 denoted by 0, 1/10, 1/5, and 1/2 respectively. Ω0 + I (○), Ω0 + II (*), Ω0 + I + II (+). (PDF 89 kb)
Additional file 1 of Ethical and practical considerations for cell and gene therapy toward an HIV cure: findings from a qualitative in-depth interview study in the United States
Creators: name: Dubé, Karine
name: Kanazawa, John
name: Patel, Hursch
name: Louella, Michael
name: Sylla, Laurie
name: Sheehy, Jeff
name: Dee, Lynda
name: Taylor, Jeff
name: Adair, Jen
name: Anthony-Gonda, Kim
name: Dropulić, Boro
name: Sauceda, John A.
name: Peluso, Michael J.
name: Deeks, Steven G.
name: Simoni, Jane
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. Supplementary Table 1. Preliminary Ethical and Practical Considerations for Cell and Gene Therapy Towards an HIV-1 Cure – Selected Quotes (United States, 2020 – 2021).
Additional file 1 of Quality of life and physical activity in type 1 diabetes
Creators: name: J. Cockcroft, Emma
name: Chithuranjan, Dillon
name: Narendran, Parth
name: C. Andrews, Robert
name: P. Dias, Renuka
Publisher: name: figshare
Year: 2025
Subjects: Medicine
Biotechnology
Chemical Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Science Policy

description: Appendix S1: Deviations from the study protocol
SN 1885A and supernova remnants in the centre of M31 with LOFAR
Creators: name: Venkattu, Deepika
name: Lundqvist, Peter
name: Torres, Miguel Pérez
name: Bonnassieux, Etienne
name: Tasse, Cyril
name: Melchior, Anne-Laure
name: Combes, Francoise
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: We present the first LOFAR image of the centre of M31 at a frequency of 150 MHz. We clearly detect three supernova remnants, which, along with archival VLA data at 3 GHz and other published radio and X-ray data allows us to characterize them in detail. Our observations also allow us to obtain upper limits the historical SN 1885A which is undetected even at a low frequency of 150 MHz. From analytical modelling we find that SN 1885A will stay in its free-expansion phase for at least another couple of centuries. We find an upper limit of $n_{\rm H}~\lesssim 0.04$ cm$^{-3}$ for the interstellar medium of SN 1885A, and that the SN ejecta density is not shallower than $\propto r^{-9}$ (on average). From the $2.6σ$ tentative detection in X-ray, our analysis shows that non-thermal emission is expected to dominate the SN 1885A emission. Comparing our results with those on G1.9+0.3, we find that it is likely that the asymmetries in G1.9+0.3 make it a more efficient radio and X-ray emitter than SN 1885A. For Braun 80, 95 and 101, the other remnants in this region, we estimate ages of 5200, 8100, and 13,100 years, and shock speeds of 1150, 880, and 660 km s$^{-1}$}, respectively. Based on this, the supernova rate in the central 0.5 kpc $\times$ 0.6 kpc of M31 is at least one per $\sim 3000~{\rm yr}$. We estimate radio spectral indices of $-0.66\pm0.05$, $-0.37\pm0.03$ and $-0.50\pm0.03$ for the remnants, respectively, which match fairly well with previous studies.
description: Accepted for publication in the Astrophysical Journal. 18 pages, 7 figures
Additional file 1: Table S1. of Characterization of the late embryogenesis abundant (LEA) proteins family and their role in drought stress tolerance in upland cotton
Creators: name: Magwanga, Richard
name: Lu, Pu
name: Kirungu, Joy
name: Lu, Hejun
name: Wang, Xingxing
name: Cai, Xiaoyan
name: Zhou, Zhongli
name: Zhang, Zhenmei
name: Salih, Haron
name: Wang, Kunbo
name: Liu, Fang
Publisher: name: figshare
Year: 2018
Subjects: Biochemistry
Medicine
Molecular Biology
Biological Sciences not elsewhere classified
Marine Biology

description: List of primers used for upland cotton, Gossypium hirsutum LEA genes expression analysis under drought stress. (DOCX 19 kb)
Simplified 1D model of groundwater transient flow through a multilayered riverbank soil
Creators: name: Ky, Sambath
name: Martinez, Juan
name: Chhun, Soksan
Publisher: name: Academic Journal of Civil Engineering
Year: 2020

description: Le niveau de la nappe phréatique le long des berges d’une rivière varie en fonction de la fluctuation du niveau d’eau de la rivière. Par conséquent, la stabilité des berges est sensible au niveau variable des pressions interstitielles générées. C’est pourquoi, pour évaluer le risque d’effondrement des berges, l’étude de l’écoulement transitoire de l’eau dans la berge, généralement multicouche, est de première importance. Le modèle d’écoulement simplifié 1D proposé est basé sur, (i) l’hypothèse de Dupuit de quasi-verticalité des lignes équipotentielles, (ii) l’équation de Boussinesq pour les écoulements non-permanents, et (iii) des perméabilités équivalentes et des porosités efficaces locales des couches de sol. Une discrétisation en différences finies dans l’espace et le temps du problème non linéaire de l’écoulement transitoire dans un sol multicouche est déduite. La résolution numérique est conduite dans le langage Matlab avec un algorithme itératif de Newton-Raphson. Les résultats montrent que le modèle simplifié proposé traduit bien le caractère multicouche du sol et l’influence de la perméabilité des différentes couches.
description: Academic Journal of Civil Engineering, Vol 35 No 1 (2017): Special Issue - RUGC 2017 Nantes
Additional file 1 of The role of faecal calprotectin in diagnosis and staging of colorectal neoplasia: a systematic review and meta-analysis
Creators: name: Ross, Fiona A.
name: Park, James H.
name: Mansouri, David
name: Combet, Emilie
name: Horgan, Paul G.
name: McMillan, Donald C.
name: Roxburgh, Campbell S. D.
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 1. Further data on faecal calprotectin and colorectal neoplasia.
Análise das manifestações patológicas incidentes em imóveis populares judicializados na comarca da cidade de Olinda – PE, entre 2013 e 2022
Creators: name: José Edson Lopes
name: Adriana Conrado de Almeida
name: Ivaldo Pedrosa Calado Filho
name: Rosana Anita da Silva Fonseca
Publisher: name: Zenodo
Year: 2023

description: RESUMO

 

A construção de habitações populares por meio de programas habitacionais configura um importante investimento governamental para reduzir o déficit habitacional e assegurar a garantia constitucional do direito à moradia para a população de baixa renda. Nos últimos anos, esse tipo de construção tem impulsionado ajuizamento de milhares de ações de indenização securitária devido ao surgimento de inúmeras manifestações patológicas nessas habitações. O termo patologia da construção civil compreende o estudo dos vícios, defeitos, não conformidades e falhas nas construções. O presente trabalho apresenta a frequência das manifestações patológicas surgidas em habitações populares construídas através da organização governamental Cohab/Perpart, financiadas pelo Sistema Financeiro de Habitação – SFH, que resultaram em ações judiciais na comarca da cidade de Olinda, mesorregião metropolitana do Estado de Pernambuco – Brasil. Os vícios construtivos analisados neste trabalho foram divididos nas categorias: demolições, superestrutura, infraestrutura, serviços complementares e “outros serviços realizados”. A presente pesquisa tem caráter exploratório uma vez que empregou dados secundários oriundos de laudos periciais e relatórios técnicos integrantes de processos judiciais selecionados a partir do sistema de Processo Judicial Eletrônico (PJe) do Tribunal de Justiça de Pernambuco (TJPE), possui o objetivo de analisar a recorrência de manifestações patológicas em casas populares periciadas e o custo financeiro gerado pelo tratamento e recuperação das patologias evidenciadas através dos laudos periciais desses imóveis. Foram analisadas 165 unidades habitacionais localizadas dois municípios localizados na mesorregião metropolitana do Recife. Concluiu-se que as edificações populares não atenderam aos padrões estabelecidos pela ABNT.

 

PALAVRAS CHAVES: casas populares; manifestações patológicas; construção civil.
Scopaeus batukaruensis Frisch 2022, spec. nov.
Creators: name: Frisch, Johannes
name: Narakusumo, Raden Pramesa
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Scopaeus
Scopaeus batukaruensis

description: Scopaeus batukaruensis Frisch, spec. nov.
(Figs 3, 28, 53 –55, 120, 147)
Type specimens: Indonesia: Holotype ♂, Bali, Tabanan: Bedugul, 1200 m, 13.6.1994, leg. Wunderle (PWCM). Paratypes (79 specimens): 21 ♂, 27 ♀, same data as holotype (MFNB, PWCM, MZB). Bali: 1 ♀, Tabanan: Batukaru, 700 m, 9.6.1994, leg. Wunderle (MFNB); 1 ♀, Tabanan: Batukaru, 17.6.1984, leg. Rougemont (HECO); 3 ♂, 4 ♀, Tabanan: Pura Batukau, 22.11.1978, leg. Huber (MHNG); 2 ♂, 6 ♀, Buleleng, Lake Tamblingan, 1300 m, 30.10.1991, leg. Löbl (MHNG); 1 ♂, 1 ♀, Buleleng, Lake Buyan, 1200 m, 8. – 9.11.1991, leg. Löbl (MHNG); 3 ♂, 1 ♀, Buleleng, Lake Buyan, 25.8.1985, leg. Robert (MHNG); 2 ♂, 1 ♀, Buleleng, Lake Buyan, 1300 m, 19.– 21.2.1984, leg. Bolm (SMNS); Mt Batukai (Mt Batukaru?), 500 – 700 m, 28. – 29.10.1991, leg. Löbl (MHNG). Lombok: 1 ♀, Pusuk Pass, 200 m, 4.11.1991, leg. Löbl (MHNG); 1 ♂, North Lombok: Senaru (Mt Rinjani), 400 m, 5.11.1991, leg. Löbl (MHNG); 1 ♂, 1 ♀, West Lombok: Sesaot, 13.6.1984, leg. Rougemont (HECO).
Description: Habitus and coloring (Fig. 3) similar to Scopaeus javanus (Figs 1, 2) and S. riedeli (Fig. 4), different as follows: Brachypterous form, possibly dominant according to type specimens, with or without palisade fringe at posterior margin of abdominal tergite VII; only one specimen from Lombok macropterous with fully developed metathoracic wings. Unicolorous orange-brown specimens unknown. Total body length 3.0 – 3.3 mm; forebody length 1.6 – 1.7 mm.
Male: Abdominal sternites VII and VIII (Fig. 120) as in S. javanus (Fig. 119) and S. riedeli (Fig. 121). Aedeagus (Figs 28, 53 – 55) about 0.8 mm long, similar to that of S. javanus (Figs 27, 50 – 52) and S. riedeli (29, 56 – 58), but different as follows: Apical lobes with strong, ventroapical emargination (Fig. 28, Fig. 53: arrow III); in ventral and dorsal view, apical lobes more slender, more parallel towards each other, less curved apicomediad and with subtruncate ends (Fig. 54: arrow V, Fig. 55); dorsal lobe, in lateral view, with narrow apex (Fig. 28, Fig. 53: arrow IV).
Female: Sperm pump as in Fig. 147; bursa membranous.
Distribution: Scopaeus batukaruensis is distributed in the Lesser Sunda Islands Bali and Lombok.
Etymology: With the epithet batukaruensis (adjective, Latin, composed of the geographic name Batukaru and the suffix – ensis, which indicates the geographical origin) reference is made to Mount Batukaru in Bali, where most of the type specimens were collected.
description: Published as part of Frisch, Johannes & Narakusumo, Raden Pramesa, 2022, Revision of Scopaeus Erichson, 1839 (Coleoptera, Staphylinidae, Paederinae) of Indonesia, with description of 19 new species, pp. 23-73 in Soil Organisms 95 (1) on page 29, DOI: 10.25674/so95iss1id311, http://zenodo.org/record/10724236
Additional file 1 of Association between self-reported body mass index and active life expectancy in a large community-dwelling sample of older U.S. adults
Creators: name: Jia, Haomiao
name: Lubetkin, Erica I.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: eTable 1. Standard Error (S.E.) of Estimates in Tables 2 and 3. eTable 2. Standard Error (S.E.) of Estimates in Fig. 1 and eFigure 1. eTable 3. Characteristics of Persons who Completed and Did Not Complete Follow-Up Survey. eFigure 1. Life Expectancy and Active Life Expectancy at Age 65 Years by BMI, Men and Women. LE65: life expectancy at age 65 years. ALE65: active life expectancy at age 65 years. Standard errors of estimates are available in supplemental data file.
Additional file 2: Table S2. of Characterization of the late embryogenesis abundant (LEA) proteins family and their role in drought stress tolerance in upland cotton
Creators: name: Magwanga, Richard
name: Lu, Pu
name: Kirungu, Joy
name: Lu, Hejun
name: Wang, Xingxing
name: Cai, Xiaoyan
name: Zhou, Zhongli
name: Zhang, Zhenmei
name: Salih, Haron
name: Wang, Kunbo
name: Liu, Fang
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Plant Biology
subject: Computational Biology

description: LEA gene in upland cotton, Gossypium hirsutum and their subcellular location prediction. The colour scheme indicates where the genes are sub-localized. (DOCX 90 kb)
Additional file 1 of Using multiple imputation and intervention-based scenarios to project the mobility of older adults
Creators: name: Kontto, Jukka
name: Paalanen, Laura
name: Sund, Reijo
name: Sainio, Päivi
name: Koskinen, Seppo
name: Demakakos, Panayotes
name: Tolonen, Hanna
name: Härkänen, Tommi
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer

description: Additional file 1: Supplementary Material. Search strategy of the literature review, description of other functional limitation outcomes, description of the preparation of data and imputation process, theory behind generating projections, additional analysis, and R-code for generating projections.
Additional file 3: Figure S1. of Characterization of the late embryogenesis abundant (LEA) proteins family and their role in drought stress tolerance in upland cotton
Creators: name: Magwanga, Richard
name: Lu, Pu
name: Kirungu, Joy
name: Lu, Hejun
name: Wang, Xingxing
name: Cai, Xiaoyan
name: Zhou, Zhongli
name: Zhang, Zhenmei
name: Salih, Haron
name: Wang, Kunbo
name: Liu, Fang
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Biological Sciences not elsewhere classified
subject: Plant Biology
subject: Computational Biology

description: Phylogenetic tree, gene structure and motif compositions of LEA 2 genes in upland cotton. The phylogenetic tree was constructed using MEGA 6.0. Exon/intron structures of LEA genes in upland cotton, exons introns and up / down-stream were represented by yellow boxes, black lines and blue boxes, respectively. Protein motif analysis represented by different colours, and each motif represented by number. (PDF 3609 kb)
title: OFROM: interview avec unine15b38m
Creators: name: Delafontaine, François
name: Grivel, Gwendoline
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2023
Subjects: subject: Français
subject: fra

description: Conforms to: Praat textgrid
description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Source: https://nakala.fr/10.34847/nkl.2c3ctw5n.v2#690e3be62cda2611593e7dea8115966d8170e4df
Additional file 1 of Mindfulness-based interventions and their relationships with body image and eating behavior in adolescents: a scoping review
Creators: name: Bacalhau, Silvia Patrícia de Oliveira Silva
name: de Orange, Luciana Gonçalves
name: Correia Junior, Marco Aurélio de Valois
name: Nunes, Juliana Vieira
name: de Almeida, Carolina Larissa Alves Sales
name: Coriolano-Marinus, Maria Wanderleya de Lavor
Publisher: name: figshare
Year: 2025
Subjects: Medicine
Science Policy
Mental Health

description: Supplementary Material 1: Additional file 1: Chart 3– Studies about MBIs and relationships with body image and/or eating behavior in adolescents. Recife, 2024.
Sources and effects of errors in vector field electron tomography
Creators: name: Kemp, Zachary David Cleary
Publisher: name: Monash University
Year: 2017
Subjects: Uncategorized

description: Vector field electron tomography is a relatively new technique for quantitative three-dimensional imaging, combining phase retrieval with vector tomography to reconstruct electromagnetic fields, potentials, and sources, from transmission electron micrographs. Vector field electron tomography reconstructs electromagnetic vector fields (i.e., the vector potential, magnetic induction field, and current density) associated with magnetic nanomaterials, such as magnetic recording media, spintronics devices, grain boundaries in hard magnets, and magnetic particles for biomedical applications. Although there is a range of techniques for characterising magnetic nanomaterials, such as Kerr microscopy, magnetic force microscopy, and Lorentz microscopy, these techniques only provide projections or surface components of the vector field. Vector field electron tomography takes projections of the potential obtained using electron holography, acquired over two or more tilt series, and reconstructs complete vector fields associated with the particle. In the present work, we consider the reconstruction of the vector potential of magnetite nanoparticles, a material of significant interest in the study of nanomagnetism. This work addresses errors, both in the recorded micrographs and those incurred during the reconstruction process, and examines the effect that these errors have on the accuracy of the reconstructed vector field. We use simulated micrographs in order to have complete control over the nature of the errors, and to be able to precisely quantify the accuracy of the reconstruction. In this thesis, we use a phase retrieval algorithm based on the transport-of-intensity equation, and reconstruct the vector potential of the simulated magnetite specimen using two tilt series and a filtered backprojection algorithm. We use three different root-mean-square error metrics to determine the accuracy of the reconstruction in terms of the total vector difference, the difference in magnitude, and the difference in direction. We then compare these results with analytical predictions. We derive expressions to predict the error in a vector field electron tomography reconstruction as functions of image noise and initial specimen orientation, and test the applicability of these expressions under a range of conditions. There is strong, quantitative agreement between our analytical and numerical results regarding the effects of image noise. Our work on orientation-dependent errors provides a semi-quantitative analysis of the total root-mean-square error as a function of magnetic moment orientation. We also present a method for reducing orientation-dependent errors by averaging reconstructions from multiple pairs of tilt series. We find that the reconstruction of the magnetic vector potential of uniformly magnetised specimens can be significantly improved by distributing the acquired images over additional tilt series.
Additional file 1 of Dealing with sexual boundary violation in mental healthcare institutions by government policies: the case of Flanders, Belgium
Creators: name: Vesentini, Lara
name: Dewilde, Kim
name: Matthys, Frieda
name: De Wachter, Dirk
name: Van Puyenbroeck, Hubert
name: Bilsen, Johan
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: Science Policy

description: Additional file 1: Survey
Additional file 1 of Protocol for a cluster randomised controlled trial of secondary distribution of hepatitis C self-testing within the context of a house-to-house hepatitis C micro-elimination programme in Karachi, Pakistan
Creators: name: Shilton, Sonjelle
name: Ali, Dania
name: Hasnain, Alyia
name: Abid, Adeel
name: Markby, Jessica
name: Jamil, Muhammad S.
name: Luhmann, Niklas
name: Nabeta, Pamela
name: Ongarello, Stefano
name: Reipold, Elena Ivanova
name: Hamid, Saeed
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: Additional file 1.
Additional file 4: Table S3. of Characterization of the late embryogenesis abundant (LEA) proteins family and their role in drought stress tolerance in upland cotton
Creators: name: Magwanga, Richard
name: Lu, Pu
name: Kirungu, Joy
name: Lu, Hejun
name: Wang, Xingxing
name: Cai, Xiaoyan
name: Zhou, Zhongli
name: Zhang, Zhenmei
name: Salih, Haron
name: Wang, Kunbo
name: Liu, Fang
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified

description: LEA genes and mRNA targets. (DOCX 53 kb)
Additional file 2 of Protocol for a cluster randomised controlled trial of secondary distribution of hepatitis C self-testing within the context of a house-to-house hepatitis C micro-elimination programme in Karachi, Pakistan
Creators: name: Shilton, Sonjelle
name: Ali, Dania
name: Hasnain, Alyia
name: Abid, Adeel
name: Markby, Jessica
name: Jamil, Muhammad S.
name: Luhmann, Niklas
name: Nabeta, Pamela
name: Ongarello, Stefano
name: Reipold, Elena Ivanova
name: Hamid, Saeed
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: Additional file 2.
Optimising delivery of oral plant-made vaccines
Creators: name: Shepherd, Robert Pearson
Publisher: name: Monash University
Year: 2017
Subjects: Uncategorized

description: Compared to prokaryotic or other eukaryotic expression systems, plants provide many benefits for the production of recombinant proteins. Extensive research has dramatically increased the yield and quality of proteins expressed in planta, yet far less is known about the complex physical and immunological characteristics associated with using plants as both expression and oral delivery vehicles for antigenic proteins. The research presented in this thesis investigates the oral delivery and immunological presentation of antigens in the gut. The type of plant tissue (leaf, hairy roots, and fruit) was shown to alter the yield of the heat- labile enterotoxin B-subunit (LTB) immunogen from the mucosal pathogen enterotoxigenic Escherichia coli, and the site of antigen release and the resulting mucosal immune response in mice (Chapter 2). As different expression system and host species have broadly different characteristics, a simpler experimental system was used where the LTB protein was engineered to accumulate in different subcellular locations within the same species and tissue (Chapter 3). Correctly folded LTB was localised to the apoplast, endoplasmic reticulum, non- lytic vacuoles, and protein bodies when expressed in the leaves of Nicotiana benthamiana. This study suggests the site of subcellular targeting not only influences the yield and quality of protein accumulation, but also the release characteristics during simulated digestion in vitro and the resulting mucosal immunogenicity when delivered orally to mice. In addition to the physical characteristics of antigen release during digestion, many immunostimulatory agents are endogenous to plants. The concentration of the known adjuvant of Solanum lycopersicum, α-tomatine was characterised in fruit expressing Norwalk virus capsid protein virus-like particles (Chapter 5). When freeze-dried transgenic fruit at two ripening stages with different concentrations of endogenous α-tomatine was fed to mice, no variation in the seroconversion or magnitude of humoral or mucosal response was observed. Nor was there any variation in response when fruit was formulated with escalating doses of purified α-tomatine. These data suggest the concentration of α-tomatine alone does not potentiate the mucosal immunogenicity to orally-delivered VLPs. The primary goal of this research has been to characterise and optimise the delivery and immunogenicity of antigens within plant cells. These experiments highlight the importance of considering the immunological context when using plant cells to deliver vaccine antigens. While the host factors investigated in this thesis are amenable to rational design, they are still only a small part of the highly complex plant-based production and delivery system which requires improved characterisation before progressing beyond proof-of-concept clinical trials.
Magnetic levitation in the field of a rotating dipole
Creators: name: Lay, Grégoire Le
name: Layani, Sarah
name: Daerr, Adrian
name: Berhanu, Michael
name: Dolbeault, Rémy
name: Person, Till
name: Roussille, Hugo
name: Taberlet, Nicolas
Publisher: name: arXiv
Year: 2024
Subjects: subject: Classical Physics (physics.class-ph)
subject: Soft Condensed Matter (cond-mat.soft)
subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: Applied Physics (physics.app-ph)
subject: FOS: Physical sciences

description: It is well known that two permanent magnets of fixed orientation will either always repel or attract one another regardless of the distance between them. However, if one magnet is rotated at sufficient speed, a stable position at a given equilibrium distance can exist for a second free magnet. The equilibrium is produced by magnetic forces alone, which are strong enough to maintain a levitating state under gravity. We show that a stable levitation can be obtained when the rotating magnet is tilted from the rotation axis, with no offset in its position. In this regime, the levitating magnet remains centered and its spinning rate remains negligible, while its magnetic moment precesses in synchronization with the driving magnet. We provide a physical explanation of the levitation through a model relying on static dipolar interactions between the two magnets and present experimental results which validate the proposed theory.
Additional file 5: Table S4. of Characterization of the late embryogenesis abundant (LEA) proteins family and their role in drought stress tolerance in upland cotton
Creators: name: Magwanga, Richard
name: Lu, Pu
name: Kirungu, Joy
name: Lu, Hejun
name: Wang, Xingxing
name: Cai, Xiaoyan
name: Zhou, Zhongli
name: Zhang, Zhenmei
name: Salih, Haron
name: Wang, Kunbo
name: Liu, Fang
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Gene ontology (GO) terms annotation of LEA genes in upland cotton. (DOCX 66 kb)
Additional file 6: Table S5. of Characterization of the late embryogenesis abundant (LEA) proteins family and their role in drought stress tolerance in upland cotton
Creators: name: Magwanga, Richard
name: Lu, Pu
name: Kirungu, Joy
name: Lu, Hejun
name: Wang, Xingxing
name: Cai, Xiaoyan
name: Zhou, Zhongli
name: Zhang, Zhenmei
name: Salih, Haron
name: Wang, Kunbo
name: Liu, Fang
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Medicine
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Cis element analysis of putative LEA promoters related to drought stress. (DOCX 719 kb)
title: OFROM: interview avec unine15b37m
Creators: name: Delafontaine, François
name: Rothenbühler, Julie
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2023
Subjects: subject: Français
subject: fra

description: Conforms to: Praat textgrid
description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Source: https://nakala.fr/10.34847/nkl.bcafkbjy.v2#bf1840c35a6d3f3a428abe88637113d93d834652
Static spherically symmetric electrovac Brans-Dicke spacetimes
Creators: name: Watanabe, Maya
Publisher: name: Monash University
Year: 2017
Subjects: Uncategorized

description: We investigate the stability of static spherically symmetric electrovac BD spacetimes under an electrostatic perturbation by a point charge. The field equations are integrated directly, and we are able to give, for the first time, a solution describing a general static spherically symmetric charged Brans-Dicke (CBD) spacetimes that is reducible to all known BD spacetimes. We find there are nine classes of independent solutions. We are able to give the physical interpretation of the parameters contained within the metric and shed light on not only the CBD spacetimes but the BD spacetimes as well. We investigate the stability of the CBD spacetimes by electrostatically perturbing it with a point charge. By extending a method first introduced by Copson (1928) we are able to convert the partial differential equation on the electrostatic potential generated by the point charge into a solvable ordinary differential equation. In this way we are able to give an exact, closed-form solution for the electrostatic potential generated by a point charge in a CBD spacetime. We introduce a boundary condition, based on Gauss' divergence theorem, that enables us to determine the constants of integration such that the solution is representative of a single charge. Furthermore, we introduce a method by which the CBD metric can be converted from isotropic to Schwarzschild-type coordinates. In Schwarzschild-type coordinates we find that the CBD Class I solution (also referred to as the Brans-Dicke Reissner-Nordstrom or BDRN solution) exhibits an extra S2 singularity in addition to the generalized inner and outer ``horizons". This additional singularity and the behaviour of the electrostatic potential is investigated by graphically representing in isotropic and Schwarzschild-type coordinates the equipotential surfaces generated by the perturbing charge in the four backgrounds (BDRN, Brans-Dicke, Reissner-Nordstrom and Schwarzschild), alongside Copson's perturbed Schwarzschild solution of Copson (1928). We find that all nine classes of the formal, generalized CBD solution are stable under electrostatic perturbations.
Additional file 1 of Retrospective analysis of patterns of opioid overdose and interventions delivered at a tertiary hospital emergency department: impact of COVID-19
Creators: name: Potaka, Katherine L.
name: Freeman, Rebecca
name: Soo, Danny
name: Nguyen, Nam-Anh
name: Sim, Tin Fei
name: Moullin, Joanna C.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Neuroscience
subject: Pharmacology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: 60506 Virology
subject: FOS: Biological sciences
subject: Computational Biology

description: Additional file 1: Supplementary Table 1. Patients presenting to a tertiary hospital emergency department with specific diagnoses during 2019 and 2020.
Additional file 1 of Enhancing medication literacy through a telepharmacy call center in Israel: consultation overview and patient satisfaction
Creators: name: Nissan, Ran
name: Cohen, Rana
name: Hurgin, Maria
name: Popilski, Hen
name: Zahalka, Khaleel
name: Natan, Meirav Ben
name: Schwartzberg, Eyal
Publisher: name: figshare
Year: 2025
Subjects: Molecular Biology
Pharmacology
Biological Sciences not elsewhere classified
Cancer
Science Policy

description: Additional file 1. Appendix 1. The comprehensive survey results.
AI-FSM
Creators: name: Fernández, Javier
name: Agirre, Irune
name: Belategi, Lorea
name: Pérez-Cerrolaza, Jon
name: Adell, Ana
name: Imaz, Jon
name: Donzella, Carlo
name: Abella, Jaume
Publisher: name: Zenodo
Year: 2024

description: AI-FSM is an annex to be applied together with a traditional FSM. It encompasses the systematic steps, actions, and technical considerations intending to extend conventional FSM for developing safety-critical systems that integrate AI. The proposed approach begins by outlining a safety lifecycle for safety-critical systems incorporating AI, based on the traditionally adopted V-model lifecycle. This encompasses essential phases associated with AI integration that require careful attention. 

AI-FSM is under the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) license. The research leading to these results has received funding from the European Union’s Horizon Europe Programme under the SAFEXPLAIN Project (www.safexplain.eu), grant agreement num. 101069595.
Interaction microorganismes et matériaux cimentaires en eau douce naturelle
Creators: name: Georges, Valentin
name: Roux, Sébastien
name: Lecomte, André
name: Feugeas, Françoise
Publisher: name: Academic Journal of Civil Engineering
Year: 2020

description: CET ARTICLE TRAITE DE L'ACTION DES MICRO-ORGANISMES PRESENTS DANS UNE EAU DOUCE NATURELLE SUR DES PATES DE CIMENT DE DIFFERENTES NUANCES. LES ANALYSES DE SURFACE MONTRENT QUE LA DENSITE BACTERIENNE DES BIOFILMS RECOUVRANT LES ECHANTILLONS DEPEND PEU DE LA NUANCE CIMENTAIRE OU DE LA POROSITE ACCESSIBLE A L’EAU DES ECHANTILLONS. TOUTEFOIS, LES CIMENTS AU CALCAIRE PRESENTENT UN COMPORTEMENT DIFFERENT. LES OBSERVATIONS AU MEB ONT REVELE LA PRESENCE ABONDANTE DE DIATOMEES SUR L’ENSEMBLE DES SURFACES ET QU’ELLES SONT SOUVENT RECOUVERTES D’UN ENCROUTEMENT MINERAL. LES FRUSTULES DE CES MICRO-ALGUES SONT DONC SUSCEPTIBLES DE REAGIR AVEC CERTAINS HYDRATES DES CIMENTS, EN RAISON DE LEUR NATURE SILICEUSE AMORPHE.
description: Academic Journal of Civil Engineering, Vol 35 No 1 (2017): Special Issue - RUGC 2017 Nantes
Joint Extraction and Classification of Danish Competences for Job Matching
Creators: name: Li, Qiuchi
name: Lioma, Christina
Publisher: name: arXiv
Year: 2024
Subjects: subject: Computation and Language (cs.CL)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: The matching of competences, such as skills, occupations or knowledges, is a key desiderata for candidates to be fit for jobs. Automatic extraction of competences from CVs and Jobs can greatly promote recruiters' productivity in locating relevant candidates for job vacancies. This work presents the first model that jointly extracts and classifies competence from Danish job postings. Different from existing works on skill extraction and skill classification, our model is trained on a large volume of annotated Danish corpora and is capable of extracting a wide range of Danish competences, including skills, occupations and knowledges of different categories. More importantly, as a single BERT-like architecture for joint extraction and classification, our model is lightweight and efficient at inference. On a real-scenario job matching dataset, our model beats the state-of-the-art models in the overall performance of Danish competence extraction and classification, and saves over 50% time at inference.
Silver nanoparticles induce neurotoxicity in a human embryonic stem cell-derived neuron and astrocyte network
Creators: name: Repar, Neza
name: Li, Hao
name: S. Aguilar, Jose
name: Quinn Li, Qingshun
name: Drobne, Damjana
name: Hong, Yiling
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience

description: Silver nanoparticles (AgNPs) are among the most extensively used nanoparticles and are found in a variety of products. This ubiquity leads to inevitable exposure to these particles in everyday life. However, the effects of AgNPs on neuron and astrocyte networks are still largely unknown. In this study, we used neurons and astrocytes derived from human embryonic stem cells as a cellular model to study the neurotoxicity that is induced by citrate-coated AgNPs (AgSCs). Immunostaining with the astrocyte and neuron markers, glial fibrillary acidic protein and microtubule-associated protein-2 (MAP2), respectively, showed that exposure to AgSCs at the concentration of 0.1 µg/mL increased the astrocyte/neuron ratio. In contrast, a higher concentration of AgSCs (5.0 µg/ml) significantly changed the morphology of astrocytes. These results suggest that astrocytes are sensitive to AgSC exposure and that low concentrations of AgSCs promote astrogenesis. Furthermore, our results showed that AgSCs reduced neurite outgrowth, decreased the expression of postsynaptic density protein 95 and synaptophysin, and induced neurodegeneration in a concentration-dependent manner. Our findings additionally suggest that the expression and phosphorylation status of MAP2 isoforms, as modulated by the activation of the Akt/glycogen synthase kinase-3/caspase-3 signaling pathway, may play an important role in AgSC-mediated neurotoxicity. We also found that AgNO3 exposure only slightly reduced neurite outgrowth and had little effect on MAP2 expression, suggesting that AgSCs and AgNO3 have different neuronal toxicity mechanisms. In addition, most of these effects were reduced when the cell culture was co-treated with AgSCs and the antioxidant ascorbic acid, which implies that oxidative stress is the major cause of AgSC-mediated astrocytic/neuronal toxicity and that antioxidants may have a neuroprotective effect.
Additional file 1 of Symptoms of COVID-19 contagion in different social contexts in association to self-reported symptoms, mental health and study capacity in Swedish university students
Creators: name: Andersson, Claes
name: Bendtsen, Marcus
name: Molander, Olof
name: Granlund, Lilian
name: Topooco, Naira
name: Engström, Karin
name: Lindfors, Petra
name: Berman, Anne H.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 1: Figure S1. Associations between contagion in different social contexts and self-reported symptoms.
title: Spiked gold nanotriangles
title: Formation, characterization and applications in surface-enhanced Raman spectroscopy and plasmon-enhanced catalysis
titleType: Subtitle
Creators: name: Liebig, Ferenc
name: Sarhan, Radwan M.
name: Bargheer, Matias
name: Schmitt, Clemens N. Z.
name: Poghosyan, Armen H.
name: Shahinyanf, Aram A.
name: Joachim Koetz
Publisher: name: Universität Potsdam
Year: 2020

description: We show the formation of metallic spikes on the surface of gold nanotriangles (AuNTs) by using the same reduction process which has been used for the synthesis of gold nanostars. We confirm that silver nitrate operates as a shape-directing agent in combination with ascorbic acid as the reducing agent and investigate the mechanism by dissecting the contribution of each component, i.e., anionic surfactant dioctyl sodium sulfosuccinate (AOT), ascorbic acid (AA), and AgNO3. Molecular dynamics (MD) simulations show that AA attaches to the AOT bilayer of nanotriangles, and covers the surface of gold clusters, which is of special relevance for the spike formation process at the AuNT surface. The surface modification goes hand in hand with a change of the optical properties. The increased thickness of the triangles and a sizeable fraction of silver atoms covering the spikes lead to a blue-shift of the intense near infrared absorption of the AuNTs. The sponge-like spiky surface increases both the surface enhanced Raman scattering (SERS) cross section of the particles and the photo-catalytic activity in comparison with the unmodified triangles, which is exemplified by the plasmon-driven dimerization of 4-nitrothiophenol (4-NTP) to 4,4'-dimercaptoazobenzene (DMAB).
description: Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe, 829
Additional file 2 of Symptoms of COVID-19 contagion in different social contexts in association to self-reported symptoms, mental health and study capacity in Swedish university students
Creators: name: Andersson, Claes
name: Bendtsen, Marcus
name: Molander, Olof
name: Granlund, Lilian
name: Topooco, Naira
name: Engström, Karin
name: Lindfors, Petra
name: Berman, Anne H.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 2: Table S2. Associations between contagion in different social contexts and self-reported mental health effects.
Additional file 3 of Symptoms of COVID-19 contagion in different social contexts in association to self-reported symptoms, mental health and study capacity in Swedish university students
Creators: name: Andersson, Claes
name: Bendtsen, Marcus
name: Molander, Olof
name: Granlund, Lilian
name: Topooco, Naira
name: Engström, Karin
name: Lindfors, Petra
name: Berman, Anne H.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 3: Table S3. Associations between contagion in different social contexts and self-reported study capacity.
Bax inhibitor-1 is required for resisting the Early Brain Injury induced by subarachnoid hemorrhage through regulating IRE1-JNK pathway
Creators: name: Shi, Lei
name: Wang, Zaizong
name: Liu, Xianjin
name: Li, Mao
name: Zhang, Shangfei
name: Song, Xiaobin
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Environmental Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Mental Health

description: Bax inhibitor-1 (BI-1) has been identified as a suppressor of Bax-mediated cell apoptosis by regulation of endoplasmic reticulum stress-induced cell death. However, the role of BI-1 in Early Brain Injury (EBI) after subarachnoid hemorrhage (SAH) remains unclear. In the present study, we aim to explore the neuroprotective functions of BI-1 in EBI after SAH by using models of SAH that induced endovascular perforation in rats. The neurological score, brain water content and blood-brain barrier (BBB) permeability were evaluated simultaneously as prognostic indicators. Western blot, RT-PCR and TUNEL staining were performed to study the role and mechanisms of BI-1 in EBI after SAH. We found that BI-1 knockdown increased histological injury and the percentages of TUNEL-positive neuron in hippocampal, promoted the expressions of endoplasmic reticulum (ER) stress proteins inositol-requiring enzyme 1α (IRE1α) and TNF receptor-associated factor 2 (TRAF2), and increased the activation levels of apoptosis signal-regulating kinase 1 (ASK1) and c-Jun N-terminal kinase (JNK) in the hippocampus of SAH rats compared with rats in SAH + vehicle group. Our results indicate that BI-1 may participate in the regulation of EBI after SAH by regulating IRE1-JNK pathway. Thus, the results suggest that BI-1 may be a potential therapeutic target for SAH treatment.