cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
title: ADCO, Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome IX, Cart. 193 (11 H 78), f. 0161r
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome IX, Archives départementales de la Côte-d'Or, Cart. 193 (11 H 78), f. 0161r, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome IX, Archives départementales de la Côte-d'Or, Cart. 193 (11 H 78), f. 0161r, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Single-neutron knockout from $^{20}\textrm{C}$ and the structure of $^{19}\textrm{C}$
Creators: name: Hwang, J. W.
name: Kim, S.
name: Satou, Y.
name: Orr, N. A.
name: Kondo, Y.
name: Nakamura, T.
name: Gibelin, J.
name: Achouri, N. L.
name: Aumann, T.
name: Baba, H.
name: Delaunay, F.
name: Doornenbal, P.
name: Fukuda, N.
name: Inabe, N.
name: Isobe, T.
name: Kameda, D.
name: Kanno, D.
name: Kobayashi, N.
name: Kobayashi, T.
name: Kubo, T.
name: Leblond, S.
name: Lee, J.
name: Marqués, F. M.
name: Minakata, R.
name: Motobayashi, T.
name: Murai, D.
name: Murakami, T.
name: Muto, K.
name: Nakashima, T.
name: Nakatsuka, N.
name: Navin, A.
name: Nishi, S.
name: Ogoshi, S.
name: Otsu, H.
name: Sato, H.
name: Shimizu, Y.
name: Suzuki, H.
name: Takahashi, K.
name: Takeda, H.
name: Takeuchi, S.
name: Tanaka, R.
name: Togano, Y.
name: Tuff, A. G.
name: Vandebrouck, M.
name: Yoneda, K.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Nuclear Experiment (nucl-ex)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: The low-lying unbound level structure of the halo nucleus $^{19}\textrm{C}$ has been investigated using single-neutron knockout from $^{20}\textrm{C}$ on a carbon target at 280 MeV/nucleon. The invariant mass spectrum, derived from the momenta of the forward going beam velocity $^{18}\textrm{C}$ fragment and neutrons, was found to be dominated by a very narrow near threshold ($E_\textrm{rel}$ = 0.036(1) MeV) peak. Two less strongly populated resonance-like features were also observed at $E_\textrm{rel}$ = 0.84(4) and 2.31(3) MeV, both of which exhibit characteristics consistent with neutron $p$-shell hole states. Comparisons of the energies, measured cross sections and parallel momentum distributions to the results of shell-model and eikonal reaction calculations lead to spin-parity assignments of $5/2^+_1$ and $1/2^-_1$ for the levels at $E_x$ = 0.62(9) and 2.89(10) MeV with $S_n$ = 0.58(9) MeV. Spectroscopic factors were also deduced and found to be in reasonable accord with shell-model calculations. The valence neutron configuration of the $^{20}\textrm{C}$ ground state is thus seen to include, in addition to the known $1s^2_{1/2}$ component, a significant $0d^2_{5/2}$ contribution. The level scheme of $^{19}\textrm{C}$, including significantly the $1/2^-_1$ cross-shell state, is well accounted for by the YSOX shell-model interaction developed from the monopole-based universal interaction.
description: Physics Letters B, in press
Additional file 1: Figure S1. of Progranulin derivative Atsttrin protects against early osteoarthritis in mouse and rat models
Creators: name: Jian-Lu Wei
name: Wenyu Fu
name: Yuan-Jing Ding
name: Aubryanna Hettinghouse
name: Matin Lendhey
name: Schwarzkopf, Ran
name: Kennedy, Oran
name: Chuan-Ju Liu
Publisher: name: figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: showing expression of PGRN in cartilage at different ages, assayed by immunohistochemistry
Optomechanical oscillator controlled by variation in its heat bath temperature
Creators: name: Kolář, Michal
name: Ryabov, Artem
name: Filip, Radim
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We propose a generation of a low-noise state of optomechanical oscillator by a temperature dependent force. We analyze the situation in which a quantum optomechanical oscillator (denoted as the membrane) is driven by an external force (produced by the piston). Both systems are embedded in a common heat bath at certain temperature $T$. The driving force the piston exerts on the membrane is bath temperature dependent. Initially, for $T=T_0$, the piston is linearly coupled to the membrane. The bath temperature is then reversibly changed to $T\neq T_0$. The change of temperature shifts the membrane, but simultaneously also increases its fluctuations. The resulting equilibrium state of the membrane is analyzed from the point of view of mechanical, as well as of thermodynamic characteristics. We compare these characteristics of membrane and derive their intimate connection. Next, we cool down the thermal noise of the membrane, bringing it out of equilibrium, still being in the contact with heat bath. This cooling retains the effective canonical Gibbs state with the effective temperature $T^\star$. In such case we study the analogs of the equilibrium quantities for low-noise mechanical states of the membrane.
NWO DMP assessment rubric
Creators: name: Cruz, Maria
name: van den Berg, Eveline
Publisher: name: Zenodo
Year: 2020
Subjects: NWO
Data Management Plan
DMP
Assessment Rubric
Data Management Policy
FAIR data
RDM
Research Data Management

description: This is an assessment rubric for DMPs following the NWO Data Management Plan template in force from January 2020, which matches the Science Europe’s Core Requirements for Data Management Plans. This rubric is intended to assist in the assessment of NWO data management plans, against the criteria required by NWO. The rubric has been divided into 'performance criteria' (on the left hand side) that match the questions and guidance in the NWO DMP template (version January 2020). Each performance criterion is followed by descriptions (‘performance levels’) outlining what NWO considers to be a sufficient and an insufficient level of response. The descriptions are intended as examples of how the performance criteria might be addressed, based on the DMP template and its respective guidance, and are not considered to be exhaustive. NWO encourages researchers to be as detailed as possible in completing data management plans for NWO-funded projects. This rubric is inspired by and based on the Wellcome DMP assessment rubric v2.0 (http://doi.org/10.5281/zenodo.257650) and the Ghent University rubrics for DMPs (https://github.com/DMPbelgium/Guidance/tree/master/DMPReviewRubrics).
description: {"references": ["Marta Teperek, Ben Mollitt, John Southall, & Mary Donaldson. (2017, January 23). Wellcome DMP assessment rubric v2.0. Zenodo. http://doi.org/10.5281/zenodo.257650", "Schipper, Pieter, Cruz, Maria, & de Jonge, Hans. (2019). NWO Data Management Plan Template. Zenodo. https://doi.org/10.5281/zenodo.3569201"]}
Additional file 1 of Deficiency of S100A8/A9 attenuates pulmonary microvascular leakage in septic mice
Creators: name: Yu, Jiang
name: Zhao, Boying
name: Pi, Qiangzhong
name: Zhou, Guoxiang
name: Cheng, Zhe
name: Qu, Can
name: Wang, Xiaowen
name: Kong, Lingwen
name: Luo, Suxin
name: Du, Dingyuan
name: Guo, Yongzheng
Publisher: name: figshare
Year: 2023
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Science Policy
subject: Immunology
subject: FOS: Clinical medicine
subject: Mental Health
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Supplementary Material 1: *Title of data: Genotyping of S100A9 null mice. *Description of data: Homozygotes S100A9 null mice had one band with 339 bp, wild-type mice had one band with 557 bp.
Additional file 1: of Convergent synthesis of 13N-labelled Peptidic structures using aqueous [13N]NH3
Creators: name: Blower, Julia
name: Cousin, Samuel
name: Gee, Antony
Publisher: name: figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Electronic Supplementary Information. (DOCX 77Â kb)
title: ADCO, Cinquième cartulaire de Saint-Étienne de Dijon (1664), Cart. 28 (G 132), 258 folios, f. 00496
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Cinquième cartulaire de Saint-Étienne de Dijon (1664), Archives départementales de la Côte-d'Or, Cart. 28 (G 132), 258 folios, f. 00496, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cinquième cartulaire de Saint-Étienne de Dijon (1664), Archives départementales de la Côte-d'Or, Cart. 28 (G 132), 258 folios, f. 00496, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
Training-induced inversion of spontaneous exchange bias field on La1.5Ca0.5CoMnO6
Creators: name: Bufaical, L.
name: Finkler, R.
name: Coutrim, L. T.
name: Pagliuso, P. G.
name: Grossi, C.
name: Stavale, F.
name: Baggio-Saitovitch, E.
name: Bittar, E. M.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: In this work we report the synthesis and structural, electronic and magnetic properties of La1.5Ca0.5CoMnO6 double-perovskite. This is a re-entrant spin cluster material which exhibits a non-negligible negative exchange bias effect when it is cooled in zero magnetic field from an unmagnetized state down to low temperature. X-ray powder diffraction, X-ray photoelectron spectroscopy and magnetometry results indicate mixed valence state at Co site, leading to competing magnetic phases and uncompensated spins at the magnetic interfaces. We compare the results for this Ca-doped material with those reported for the resemblant compound La1.5Sr0.5CoMnO6, and discuss the much smaller spontaneous exchange bias effect observed for the former in terms of its structural and magnetic particularities. For La1.5Ca0.5CoMnO6, when successive magnetization loops are carried, the spontaneous exchange bias field inverts its sign from negative to positive from the first to the second measurement. We discuss this behavior based on the disorder at the magnetic interfaces, related to the presence of a glassy phase. This compound also exhibits a large conventional exchange bias, for which there is no sign inversion of the exchange bias field for consecutive cycles.
Additional file 1: of What methods do reviews of normative ethics literature use for search, selection, analysis, and synthesis? In-depth results from a systematic review of reviews
Creators: name: Mertz, Marcel
name: Strech, Daniel
name: Kahrass, Hannes
Publisher: name: figshare
Year: 2017
Subjects: Medicine
Science Policy

description: PRISMA checklist. (DOC 67Â kb)
Linear Polarization, Circular Polarization, and Depolarization of Gamma-ray Bursts: A Simple Case of Jitter Radiation
Creators: name: Mao, Jirong
name: Wang, Jiancheng
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Linear and circular polarizations of gamma-ray bursts (GRBs) have been detected during recent years. We adopt a simplified model to investigate GRB polarization characteristics in this paper. A compressed two-dimensional turbulent slab containing stochastic magnetic fields is considered, and jitter radiation can produce the linear polarization under this special magnetic field topology. Turbulent Faraday rotation measure (RM) of this slab makes strong wavelength-dependent depolarization. The jitter photons can also scatter with those magnetic clumps inside the turbulent slab, and a nonzero variance of the Stokes parameter $V$ can be generated. Furthermore, the linearly and circularly polarized photons in the optical and radio bands may suffer heavy absorptions from the slab. Thus we consider the polarized jitter radiation transfer processes. Finally, we compare our model results with the optical detections of GRB 091018, GRB 121024A, and GRB 131030A. We suggest simultaneous observations of GRB multi-wavelength polarization in the future.
description: 2017, ApJ, 838, 78
Additional file 3: of Association between ultrasound-detected synovitis and knee pain: a population-based caseâ control study with both cross-sectional and follow-up data
Creators: name: Sarmanova, Aliya
name: Hall, Michelle
name: Fernandes, Gwen
name: Bhattacharya, Archan
name: Valdes, Ana
name: Walsh, David
name: Doherty, Michael
name: Weiya Zhang
Publisher: name: figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 60506 Virology
subject: Computational Biology

description: Is a table presenting characteristics of the responders to the follow-up questionnaire at 1Â year among people with early and established knee pain recruited at baseline. (DOCX 36 kb)
Nucleosynthesis Predictions and High-Precision Deuterium Measurements
Creators: name: Riemer-Sørensen, Signe
name: Jenssen, Espen Sem
Publisher: name: arXiv
Year: 2017
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: Two new high-precision measurements of the deuterium abundance from absorbers along the line of sight to the quasar PKS1937--1009 were presented. The absorbers have lower neutral hydrogen column densities (N(HI) $\approx$ 18\,cm$^{-2}$) than for previous high-precision measurements, boding well for further extensions of the sample due to the plenitude of low column density absorbers. The total high-precision sample now consists of 12 measurements with a weighted average deuterium abundance of D/H = $2.55\pm0.02\times10^{-5}$. The sample does not favour a dipole similar to the one detected for the fine structure constant. The increased precision also calls for improved nucleosynthesis predictions. For that purpose we have updated the public AlterBBN code including new reactions, updated nuclear reaction rates, and the possibility of adding new physics such as dark matter. The standard Big Bang Nucleosynthesis prediction of D/H = $2.456\pm0.057\times10^{-5}$ is consistent with the observed value within 1.7 standard deviations.
description: 10 pages, 5 figures, conference proceedings from VarCosmoFun 2016
An exploration of heating mechanisms in a supra-arcade plasma sheet formed after a coronal mass ejection
Creators: name: Reeves, Katharine K.
name: Freed, Michael S.
name: McKenzie, David E.
name: Savage, Sabrina L.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We perform a detailed analysis of the thermal structure of the region above the post-eruption arcade for a flare that occurred on 2011 October 22. During this event, a sheet of hot plasma is visible above the flare loops in the 131 Å bandpass of the Atmospheric Imaging Assembly (AIA) on the {\it Solar Dynamics Observatory (SDO)}. Supra-arcade downflows (SADs) are observed traveling sunward through the post-eruption plasma sheet. We calculate differential emission measures using the AIA data and derive an emission measure weighted average temperature in the supra-arcade region. In areas where many SADs occur, the temperature of the supra-arcade plasma tends to increase, while in areas where no SADs are observed, the temperature tends to decrease. We calculate the plane-of-sky velocities in the supra-arcade plasma and use them to calculate the potential heating due to adiabatic compression and viscous heating. Ten of the 13 SADs studied have noticeable signatures in both the adiabatic and the viscous terms. The adiabatic heating due to compression of plasma in front of the SADs is on the order of 0.1 - 0.2 MK/s, which is similar in magnitude to the estimated conductive cooling rate. This result supports the notion that SADs contribute locally to the heating of plasma in the supra-arcade region. We also find that in the region without SADs, the plasma cools at a rate slower than the estimated conductive cooling, indicating additional heating mechanisms may act globally to keep the plasma temperature high.
description: 21 pages, 9 figures, accepted in ApJ
HESPANHA, António Manuel – Uma monarquia tradicional: imagens e mecanismos da política no Portugal seiscentista. [S.l.]: Edição do Autor; Kindle-Amazon, 2019 e HESPANHA, António Manuel – Uma monarquia constitucional: a Constituição monárquica oitocentista
Creators: name: Subtil, José
Publisher: name: Cadernos do Arquivo Municipal
Year: 2019

description: Cadernos do Arquivo Municipal, N.º 12 (2019): Bairros de Lisboa
Explorar a cidade: passo a passo pelos bairros de Lisboa
Creators: name: Brites, Ana Margarida Teixeira
name: Loureiro, Ana Maria Menezes
name: Ferreira, Filipa Schreck Cancela De Abreu Ribeiro
name: Pinheiro, Maria Vitória Lourenço
Publisher: name: Cadernos do Arquivo Municipal
Year: 2019

description: Cadernos do Arquivo Municipal, N.º 12 (2019): Bairros de Lisboa
NetSpam: a Network-based Spam Detection Framework for Reviews in Online Social Media
Creators: name: Shehnepoor, Saeedreza
name: Salehi, Mostafa
name: Farahbakhsh, Reza
name: Crespi, Noel
Publisher: name: arXiv
Year: 2017
Subjects: subject: Social and Information Networks (cs.SI)
subject: Computation and Language (cs.CL)
subject: Information Retrieval (cs.IR)
subject: Physics and Society (physics.soc-ph)
subject: FOS: Computer and information sciences
subject: FOS: Physical sciences

description: Nowadays, a big part of people rely on available content in social media in their decisions (e.g. reviews and feedback on a topic or product). The possibility that anybody can leave a review provide a golden opportunity for spammers to write spam reviews about products and services for different interests. Identifying these spammers and the spam content is a hot topic of research and although a considerable number of studies have been done recently toward this end, but so far the methodologies put forth still barely detect spam reviews, and none of them show the importance of each extracted feature type. In this study, we propose a novel framework, named NetSpam, which utilizes spam features for modeling review datasets as heterogeneous information networks to map spam detection procedure into a classification problem in such networks. Using the importance of spam features help us to obtain better results in terms of different metrics experimented on real-world review datasets from Yelp and Amazon websites. The results show that NetSpam outperforms the existing methods and among four categories of features; including review-behavioral, user-behavioral, reviewlinguistic, user-linguistic, the first type of features performs better than the other categories.
MOESM2 of ATNT: an enhanced system for expression of polycistronic secondary metabolite gene clusters in Aspergillus niger
Creators: name: Geib, Elena
name: Brock, Matthias
Publisher: name: figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 2. Southern blot analyses and plasmid maps of constructs used for generation of lacZ reporter strains. (A, C) Southern blot for identification of single copy integration strains. Digoxygenin labelled probes were used for hybridisation. Transformants used in subsequent analyses are numbered. (A) A1144 strains with integration of the tet-on:lacZ construct. Plasmid control and genomic DNA of parental strains and transformants were restricted with AhdI, which cuts once in the respective plasmid. (C) ATNT16 strain transformed with the PterA:lacZ construct. Plasmid control and genomic DNA of parental strains and transformants were restricted with HindIII, which cuts once in the respective plasmid. (B, D) Plasmid maps of the transformation constructs. Position of oligonucleotides used in this study (P + number) as well as the position of the probe generated for Southern blot analyses and position of the restriction enzyme are shown. ptrA = pyrithiamine resistance cassette. hph = hygromycin resistance casette. PterA = terA promoter from Aspergillus terreus. lacZ = β-galactosidase gene from Escherichia coli. TtrpC = trpC terminator sequence from Aspergillus terreus.
Generating the mapping class group of a nonorientable surface by crosscap transpositions
Creators: name: Leśniak, Marta
name: Szepietowski, Błażej
Publisher: name: arXiv
Year: 2017
Subjects: subject: Geometric Topology (math.GT)
subject: FOS: Mathematics
subject: 57N05, 20F38

description: A crosscap transposition is an element of the mapping class group of a nonorientable surface represented by a homeomorphism supported on a one-holed Klein bottle and swapping two crosscaps. We prove that the mapping class group of a compact nonorientable surface of genus $g\ge 7$ is generated by conjugates of one crosscap transposition. In the case when the surface is either closed or has one boundary component, we give an explicit set of $g+2$ crosscap transpositions generating the mapping class group.
Additional file 1 of Oral pathogens exacerbate Parkinson’s disease by promoting Th1 cell infiltration in mice
Creators: name: Bai, Xue-Bing
name: Xu, Shuo
name: Zhou, Lu-Jun
name: Meng, Xiao-Qian
name: Li, Yu-Lin
name: Chen, Yan-Lin
name: Jiang, Yi-Han
name: Lin, Wen-Zhen
name: Chen, Bo-Yan
name: Du, Lin-Juan
name: Tian, Guo-Cai
name: Liu, Yan
name: Duan, Sheng-Zhong
name: Zhu, Ya-Qin
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Science Policy
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Supplementary Figure S1. Periodontitis caused severe alveolar bone resorption in mice. LIP, ligature-induced periodontitis. SP, subgingival plaque. LIP-SP, ligature-induced periodontitis with application of subgingival plaque. LIP-mix: ligature-induced periodontitis and oral infection of V. parvula and S. mutans mixture. (A) Representative images of left maxilla from the indicated groups of mice. (B) Quantification of the distance from cementoenamel junction (CEJ) to alveolar bone crest (ABC). Values are expressed as mean ± SEM (standard error of the mean). ns, not significant, **P < 0.01. Supplementary Figure S2. Neither LIP nor SP alone could aggravate dopaminergic neuronal loss in MPTP-induced PD mice. (A-B) Representative immunohistochemical staining (A) and quantification (B) of TH-positive fibers in ST. (C-D) Representative immunohistochemical staining (C) and quantification (D) of TH-positive neurons in SN. Scale bar: 200 μm. (E-F) Western blotting analysis of TH in ST. Values are expressed as mean ± SEM. ns, not significant. Supplementary Figure S3. Pathogens from subgingival plaques are not detected in the brains of MPTP + LIP-SP treated mice. (A) Alpha diversity of brain microbiota assessed by Chao 1, Faith’s pd, and Shannon index. (B) Beta diversity of brain microbiota. (C) Random forest analysis of brain microbiota at the species level. No pathogens from subgingival plaques were detected in the brains of MPTP + LIP-SP group. Supplementary Figure S4. Oral administration of V. parvula and S. mutans mixture (mix) does not result in bacterial colonization and exacerbation of MPTP-induced PD in mice. (A) Schematic illustration of the experimental procedure. Mix, V. parvula and S. mutans mixture. (B) Quantitative real-time polymerase chain reaction (qRT-PCR) analysis of Veillonella parvula and Streptococcus mutans in feces. n=3:3. (C) Western blotting analysis of TH in ST. Values are expressed as mean ± SEM. ns, not significant. *P < 0.05.
Synthesis and photophysical studies of analogues of the GFP chromophore and epicocconone
Creators: name: Chatterjee, Soumit
Publisher: name: Macquarie University
Year: 2022
Subjects: Other education not elsewhere classified

description: Epicocconone, isolated from the fungus Epicoccum nigrum, is only weakly green fluorescent in aqueous solution but emits brightly in the orange-red region in presence of amines due to reversible enamine formation. This makes it an attractive fluorescent sensor for proteins as lysine is one of the commonest amino acids. However, epicocconone has a low quantum yield (< 0.01) in water, increasing to a maximum of 0.17 in the presence of excess amine and detergent. Studying the fluorescent decays, an ultrafast component was found responsible for the non-radiative decay of epicocconone, explaining its relatively low quantum yield. This component was found to be only a minor contributor to the relaxation of the butylamine (a mimic of lysine residues of protein) adduct of epicocconone while accompanied by a rise time that extends the fluorescence decay to well over 2 ns, explaining the higher quantum yield in epicocconone-protein adduct. These observations indicated that photoisomerization or excited-state tautomerization to be the origin of the ultrafast nonradiative process. To have a better understanding of the excited state dynamics, four analogues were synthesized which reacted with amines in a similar fashion to epicocconone. Ultrafast dynamics of these analogues established the involvement of photoisomerization of the heptatriene side chain, rather than the tautomerism of the β-diketone, as the major nonradiative process in epicocconone. Two more analogues with much higher quantum yields were synthesized. In this set of compounds the native compounds were found to be an order of magnitude more fluorescent than epicocconone in neat solutions while the quantum yields of the respective butylamine adducts were found to be about the same as epicocconone-butylamine adducts. Our results suggested that both these compounds could be useful as synthetic alternatives to epicocconone for protein staining and as dual-stains in biotechnology. The isolated chromophore of green fluorescence protein (p-HBDI) is virtually non-fluorescent at room temperature, unlike the protein, due to photoisomerization. A series of GFP analogues were synthesized via oxazolone formation, which we found a superior method to published synthetic routes. One of the analogues exhibited dual emission at room temperature in water and was 500 times more fluorescent than p-HBDI. This unprecedented result suggests that GFP analogues of this type could be useful in applications where dual fluorescence or switchable fluorescence can be used such as ultra high resolution microscopy (e.g. STORM).
A biological model of scabies infection dynamics and treatment explains why mass drug administration does not lead to elimination
Creators: name: Lydeamore, M.
name: Campbell, P. T.
name: Regan, D. G.
name: Tong, S. Y. C.
name: Andrews, R.
name: Steer, A. C.
name: Romani, L.
name: Kaldor, J. M.
name: McVernon, J.
name: McCaw, J. M.
Publisher: name: arXiv
Year: 2016
Subjects: subject: Populations and Evolution (q-bio.PE)
subject: FOS: Biological sciences

description: Despite a low global prevalence, infections with Sarcoptes scabiei, or scabies, are still common in remote communities such as in northern Australia and the Solomon Islands. Mass drug administration (MDA) has been utilised in these communities, and although prevalence drops substantially initially, these reductions have not been sustained. We develop a compartmental model of scabies infection dynamics and incorporate both ovicidal and non-ovicidal treatment regimes. By including the dynamics of mass drug administration, we are able to reproduce the phenomena of an initial reduction in prevalence, followed by the recrudescence of infection levels in the population. We show that even under a `perfect' two-round MDA, eradication of scabies under a non-ovicidal treatment scheme is almost impossible. We then go on to consider how the probability of elimination varies with the number of treatment rounds delivered in an MDA. We find that even with infeasibly large numbers of treatment rounds, elimination remains challenging.
description: 22 pages, 10 figures
title: ADCO, Septième cartulaire de Saint-Étienne de Dijon (1661-1665), Cart. 29 (G 134), 996 folios, f. 0022
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Chartes de la Bourgogne du Moyen Âge
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: LaMOP

description: Septième cartulaire de Saint-Étienne de Dijon (1661-1665), Archives départementales de la Côte-d'Or, Cart. 29 (G 134), 996 folios, f. 0022, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Septième cartulaire de Saint-Étienne de Dijon (1661-1665), Archives départementales de la Côte-d'Or, Cart. 29 (G 134), 996 folios, f. 0022, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
MOESM1 of Investigation of red blood cell mechanical properties using AFM indentation and coarse-grained particle method
Creators: name: Barns, Sarah
name: Balanant, Marie
name: Sauret, Emilie
name: Flower, Robert
name: Suvash Saha
name: YuanTong Gu
Publisher: name: figshare
Year: 2017
Subjects: subject: Biophysics
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Additional file 1. Experimental data.
title: ADCO, Cartulaire de Cîteaux pour les domaines de Saint-Jean de Losne et Losne (XVIIIe siècle), Cart. 198-01 (11 H 1055), 185 folios, f. 0290
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2019
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Cartulaire de Cîteaux pour les domaines de Saint-Jean de Losne et Losne (XVIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 198-01 (11 H 1055), 185 folios, f. 0290, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de Cîteaux pour les domaines de Saint-Jean de Losne et Losne (XVIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 198-01 (11 H 1055), 185 folios, f. 0290, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Search for GeV counterparts to fast radio bursts with Fermi
Creators: name: Xi, Shao-Qiang
name: Tam, Pak-Hin Thomas
name: Peng, Fang-Kun
name: Wang, Xiang-Yu
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: The non-repeating fast radio bursts (FRBs) could arise from catastrophic stellar explosions or magnetar giant flares, so relativistic blast waves might be produced in these events. Motivated by this, we here search for GeV counterparts to all non-repeating FRBs with Fermi Large Area Telescope (LAT), including FRB 131104 that is claimed to be possibly associated with a gamma-ray transient candidate detected by Swift Burst Alert Telescope (BAT). FRB 131104 enters the field of view (FoV) of LAT ~5000s after the burst time, so we are only able to search for the GeV afterglow emission during this period, but no significant GeV emission is detected. We also perform a search for GeV emissions from other FRBs, but no significant GeV emissions are detected either. Upper limit fluences in the range of (4.7-29.2)x10^(-7) erg/cm2 are obtained, and then the upper limits of the isotropic blast wave kinetic energy of about (1-200)x10^(53) erg are inferred under certain assumptions. Although the current limits on the isotropic blast wave energy are not sufficiently stringent to rule out the connection between FRBs and GRB-like transients, future more sensitive observations with Fermi or Imaging Atmospheric Cherenkov Telescopes might be able to constrain the connection.
description: 12 pages, 2 figures, 2 tables, ApJ Letters, in press
Additional file 4: of Delivery cost analysis of a reactive mass cholera vaccination campaign: a case study of Shancholâ ˘ vaccine use in Lake Chilwa, Malawi
Creators: name: Ilboudo, Patrick
name: Jean-Bernard Le Gargasson
Publisher: name: figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Distribution of unit delivery costs per fully vaccinated person by input type in 2016 US$ and international dollars (I$). (DOCX 22 kb)
title: ADCO, Cartulaire du prieuré Notre-Dame de Bonvaux, dépendant du Val-des-Ecoliers (XVe siècle), Dijon, Cart. 228 (27 H), 68 folios, 109 actes (1211-1356), f. 0137
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2011
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire

description: Cartulaire du prieuré Notre-Dame de Bonvaux, dépendant du Val-des-Ecoliers (XVe siècle), Dijon, Archives départementales de la Côte-d'Or, Cart. 228 (27 H), 68 folios, 109 actes (1211-1356). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire du prieuré Notre-Dame de Bonvaux, dépendant du Val-des-Ecoliers (XVe siècle), Dijon, Archives départementales de la Côte-d'Or, Cart. 228 (27 H), 68 folios, 109 actes (1211-1356), f. 0137, in Projet CBMA - Corpus Burgundiae Medii Aevi \[Ressource en ligne\], https:// manuscrits.cbma-project.eu/
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb15250518p
description: Provenance: https://www.geonames.org/6453767
description: Provenance: Dijon
description: Provenance: http://www.wikidata.org/entity/Q7003
Sharp Uniqueness Results for Discrete Evolutions
Creators: name: Lyubarskii, Yurii
name: Malinnikova, Eugenia
Publisher: name: arXiv
Year: 2017
Subjects: subject: Classical Analysis and ODEs (math.CA)
subject: FOS: Mathematics
subject: Primary 35Q41, 47B36, Secondary 39A12, 33C45

description: We prove sharp uniqueness results for a wide class of one-dimensional discrete evolutions. The proof is based on a construction from the theory of complex Jacobi matrices combined with growth estimates of entire functions.
description: 10 pages
The Carriers of the "Unidentified" Infrared Emission Features: Clues from Polycyclic Aromatic Hydrocarbons with Aliphatic Sidegroups
Creators: name: Yang, Xuejuan
name: Glaser, R.
name: Li, Aigen
name: Zhong, J. X.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: The "unidentified" infrared emission (UIE) features at 3.3, 6.2, 7.7, 8.6, and 11.3 $μ$m are ubiquitously seen in various astrophysical regions. The UIE features are characteristic of the stretching and bending vibrations of aromatic hydrocarbons. The 3.3 $μ$m feature resulting from aromatic C--H stretches is often accompanied by a weaker feature at 3.4 $μ$m often attributed to aliphatic C--H stretches. The ratio of the observed intensity of the 3.3 $μ$m aromatic C--H feature ($I_{3.3}$) to that of the 3.4 $μ$m aliphatic C--H feature ($I_{3.4}$) allows one to estimate the aliphatic fraction (i.e. $N_{\rm C,aliph}/N_{\rm C,arom}$, the number of C atoms in aliphatic units to that in aromatic rings) of the UIE carriers, provided the intrinsic oscillator strengths of the 3.3 $μ$m aromatic C--H stretch ($A_{3.3}$) and the 3.4 $μ$m aliphatic C--H stretch ($A_{3.4}$) are known. In this article we summarize the computational results on $A_{3.3}$ and $A_{3.4}$ and their implications for the aromaticity and aliphaticity of the UIE carriers. We use density functional theory and second-order perturbation theory to derive $A_{3.3}$ and $A_{3.4}$ from the infrared vibrational spectra of seven PAHs with various aliphatic substituents (e.g., methyl-, dimethyl-, ethyl-, propyl-, butyl-PAHs, and PAHs with unsaturated alkyl-chains). The mean band strengths of the aromatic ($A_{3.3}$) and aliphatic ($A_{3.4}$) C--H stretches are derived and then employed to estimate the aliphatic fraction of the UIE carriers by comparing $A_{3.4}$/$A_{3.3}$ with $I_{3.4}$/$I_{3.3}$. We conclude that the UIE emitters are predominantly aromatic, as revealed by the observationally-derived ratio ~ 0.12 and the computationally-derived ratio ~ 1.76 which suggest an upper limit of $N_{\rm C,aliph}/N_{\rm C,arom}$ ~ 0.02 for the aliphatic fraction of the UIE carriers.
description: 67 pages, 18 figures, 8 tables; invited article accepted for publication in "New Astronomy Review"; a considerable fraction of this article is concerned with the computational techniques and results, readers who are mainly interested in astrophysics may wish to only read "Introduction", and "Astrophysical Implications"
MOESM1 of ATNT: an enhanced system for expression of polycistronic secondary metabolite gene clusters in Aspergillus niger
Creators: name: Geib, Elena
name: Brock, Matthias
Publisher: name: figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 1. Southern blot analyses and plasmid map of construct used for generation of ATNT strains. (A) Southern blot for identification of single copy integration strains. A digoxygenin labelled probe was used for hybridisation. Plasmid control and genomic DNA of parental strains and transformants were restricted with ApaI, which cuts once in the respective plasmid. The transformant used in subsequent analyses is numbered. (B) Plasmid map of the transformation construct. Position of oligonucleotides used in this study (P + number) as well as the position of the probe generated for Southern blot analysis and position of the restriction enzyme are shown. ble = phleomycin resistance cassette. TetOn = Tet-on promoter system. terR = terR gene including its native terminator sequence.
title: Attestation pour le patient no 113
Creators: name: Leibowitch, Jacques (1942-2020)
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020

description: Lettre de Jacques Leibowitch résumant l'histoire du traitement anti-vih du patient, ayant pour but, une fois signée et approuvée, de servir d'attestation de leur consentement à emprunter une voie médicamenteuse non validée (allégée).
Anomalous localization behaviors in disordered pseudospin systems: Beyond the conventional Anderson picture
Creators: name: Fang, Anan
name: Zhang, Zhao-Qing
name: Louie, Steven G.
name: Chan, C. T.
Publisher: name: arXiv
Year: 2016
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We discovered novel Anderson localization behaviors of pseudospin systems in a 1D disordered potential. For a pseudospin-1 system, due to the absence of backscattering under normal incidence and the presence of a conical band structure, the wave localization behaviors are entirely different from those of normal disordered systems. We show both numerically and analytically that there exists a critical strength of random potential ($W_c$), which is equal to the incident energy ($E$), below which the localization length $ξ$ decreases with the random strength $W$ for a fixed incident angle $θ$. But the localization length drops abruptly to a minimum at $W=W_c$ and rises immediately afterwards, which has never been observed in ordinary materials. The incidence angle dependence of the localization length has different asymptotic behaviors in two regions of random strength, with $ξ\propto \sin^{-4}θ$ when $WW_c$. Experimentally, for a given disordered sample with a fixed randomness strength $W$, the incident wave with incident energy $E$ will experience two different types of localization, depending on whether $E>W$ or $E
description: 44 pages, 5 figures
MONTALTO, Filipe – Arquipatologia (tratados I-IX). Revisão científica Adelino Cardoso; José Morgado Pereira; Manuel Silvério Marques; trad. de Domingos Lucas Dias; Inês de Ornellas e Castro; Joana Mestre Costa. Lisboa: Edições Colibri, 2017
Creators: name: Fonseca, Nuno
Publisher: name: Cadernos do Arquivo Municipal
Year: 2019

description: Cadernos do Arquivo Municipal, N.º 11 (2019): O Hospital Real de Todos-os-santos: a saúde e a cidade na Época Moderna
title: ADCO, Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome IX, Cart. 193 (11 H 78), f. 0205v
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome IX, Archives départementales de la Côte-d'Or, Cart. 193 (11 H 78), f. 0205v, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome IX, Archives départementales de la Côte-d'Or, Cart. 193 (11 H 78), f. 0205v, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Additional file 2: of Association between ultrasound-detected synovitis and knee pain: a population-based caseâ control study with both cross-sectional and follow-up data
Creators: name: Sarmanova, Aliya
name: Hall, Michelle
name: Fernandes, Gwen
name: Bhattacharya, Archan
name: Valdes, Ana
name: Walsh, David
name: Doherty, Michael
name: Weiya Zhang
Publisher: name: figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Computational Biology

description: Is a table presenting ultrasound synovial features and radiographic osteoarthritis and associations with knee pain. (DOCX 36 kb)
Real-time monitoring of the structure of ultra thin Fe$_3$O$_4$ films during growth on Nb-doped SrTiO$_3$(001)
Creators: name: Kuschel, Olga
name: Spiess, Wanja
name: Schemme, Tobias
name: Rubio-Zuazo, Juan
name: Kuepper, Karsten
name: Wollschläger, Joachim
Publisher: name: arXiv
Year: 2017
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: In this work thin magnetite films were deposited on SrTiO$_3$ via reactive molecular beam epitaxy at different substrate temperatures. The growth process was monitored in-situ during deposition by means of x-ray diffraction. While the magnetite film grown at 400$^\circ$C shows a fully relaxed vertical lattice constant already in the early growth stages, the film deposited at 270$^\circ$C exhibits a strong vertical compressive strain and relaxes towards the bulk value with increasing film thickness. Furthermore, a lateral tensile strain was observed under these growth conditions although the inverse behavior is expected due to the lattice mismatch of -7.5%. Additionally, the occupancy of the A and B sublattices of magnetite with tetrahedral and octahedral sites was investigated showing a lower occupancy of the A sites compared to an ideal inverse spinel structure. The occupation of A sites decreases for a higher growth temperature. Thus, we assume a relocation of the iron ions from tetrahedral sites to octahedral vacancies forming a deficient rock salt lattice.
description: 5 pages, 4 figures
MOISÃO, Cristina – A arte das mãos: cirurgia e cirurgiões em Portugal durante os séculos XII a XV. Lisboa: Centro de Estudos Históricos - Universidade Nova de Lisboa, 2018
Creators: name: Martins, Diana
Publisher: name: Cadernos do Arquivo Municipal
Year: 2019

description: Cadernos do Arquivo Municipal, N.º 11 (2019): O Hospital Real de Todos-os-santos: a saúde e a cidade na Época Moderna