cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1: of Uncertainty and energy-sector equity returns in Iran: a Bayesian and quasi-Monte Carlo time-varying analysis
Creators: name: Fazelabdolabadi, Babak
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: FOS: Biological sciences
subject: Computational Biology

description: Figure S1. The ADCC-GARCH dynamic conditional correlation between OVX and ORI (a), PET (b), and ODR (c). Figure S2. The extracted Bayesian network for returns in each sector in selected price regime periods - [‘2015-03-17’-‘2018-06-12’] (ORI); [‘2013-11-18’-‘2018-06-12’] (PET); [‘2009-07-27’-‘2018-07-23’] (ODR) - obtained by the score-based algorithm. The solid/dashed lines refer to statistically significant/insignificant arcs, respectively. The letters represent (A)rt, (B)rt − 1, (C)rt − 2, (D)rOVX, t − 1, (E)rOVX, t − 2, (F) rOPEC, t − 1, (G) rOPEC, t − 2. Figure S3. The extracted Bayesian network for volatility in each sector in selected price regime periods - [‘2015-03-17’-‘2018-06-12’] (ORI); [‘2013-11-18’-‘2018-06-12’] (PET); [‘2009-07-27’-‘2018-07-23’] (ODR) - obtained by the score-based algorithm. The solid/dashed lines refer to statistically significant/insignificant arcs, respectively. The letters represent (A) σ t 2 $$ {\sigma}_t^2 $$ , (B) σ t − 1 2 $$ {\sigma}_{t-1}^2 $$ , (C) σ t − 2 2 $$ {\sigma}_{t-2}^2 $$ , (D) σ OVX , t − 1 2 $$ {\sigma}_{OVX,t-1}^2 $$ , (E) σ OVX , t − 2 2 $$ {\sigma}_{OVX,t-2}^2 $$ , (F) σ OPEC , t − 1 2 $$ {\sigma}_{OPEC,t-1}^2 $$ , (G) σ OPEC , t − 2 2 $$ {\sigma}_{OPEC,t-2}^2 $$ . Table S1. The BIC for different price regimes, under homogeneous Markov switching autoregressive models. Table S2. The BIC for different price regimes, under non-homogeneous Markov switching autoregressive models. Table S3. Descriptive statistics of the equity log returns in the selected periods. Table S4. The GARCH parameters for the ORI sector in the period [‘2015-03-17’-‘2018-06-12’]. Table S5. The GARCH parameters for the PET sector in the period [‘2013-11-18’-‘2018-06-12’]. Table S6. The GARCH parameters for the ODR sector in the period [‘2009-07-27’-‘2018-07-23’]. Table S7. The mean dynamic correlations, obtained from DCC/ADCC GARCH, over the corresponding selected periods. Table S8. The estimated copula dependence parameters for Gaussian, Student-t, Gumbel, Clayton, and Frank copula models, over the corresponding selected periods. (DOCX 470 kb)
O(2) symmetry breaking vs. vortex loop percolation
Creators: name: Kajantie, K.
name: Laine, M.
name: Neuhaus, T.
name: Rajantie, A.
name: Rummukainen, K.
Publisher: name: arXiv
Year: 2000
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: Superconductivity (cond-mat.supr-con)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We study with lattice Monte Carlo simulations the relation of global O(2) symmetry breaking in three dimensions to the properties of a geometrically defined vortex loop network. We find that different definitions of constructing a network lead to different results even in the thermodynamic limit, and that with typical definitions the percolation transition does not coincide with the thermodynamic phase transition. These results show that geometrically defined percolation observables need not display universal properties related to the critical behaviour of the system, and do not in general survive in the field theory limit.
description: 14 pages; references added, version to appear in Phys.Lett.B
Additional file 1: of Gait mechanics contribute to exercise induced pain flares in knee osteoarthritis
Creators: name: Boyer, Katherine
name: Hafer, Jocelyn
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Computational Biology

description: Table S1. Baseline knee angles for Faster than preferred speed overground walking. * indicates a significant main group effect. (DOCX 68 kb)
Family-group names of fossil fishes
Creators: name: Laan, Richard Van Der
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy

description: Family †Kipalaichthyidae Taverne 1976
 †Kipalaichthyidae Taverne 1976: 25, 30 (family) † Kipalaichthys Taverne 1976
description: Published as part of Laan, Richard Van Der, 2018, Family-group names of fossil fishes, pp. 1-167 in European Journal of Taxonomy 466 on page 63, DOI: 10.5852/ejt.2018.466, http://zenodo.org/record/5557557
On the drag of freely falling non-spherical particles
Creators: name: Bagheri, Gholamhossein
name: Bonadonna, Costanza
Publisher: name: arXiv
Year: 2018
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: We present a new general model for the prediction of the drag coefficient of non-spherical solid particles of regular and irregular shapes falling in gas or liquid valid for sub-critical particle Reynolds numbers (i.e. $Re < 3 \times 10^5$). Results are obtained from experimental measurements on 300 regular and irregular particles in the air and analytical solutions for ellipsoids. Depending on their size, irregular particles are accurately characterized with a 3D laser scanner or SEM micro-CT method. The experiments are carried out in settling columns with height of 0.45 to 3.60m and in a 4m-high vertical wind tunnel. In addition, $881$ additional experimental data points are also considered that are compiled from the literature for particles of regular shapes falling in liquids. New correlation is based on the particle Reynolds number and two new shape descriptors defined as a function of particle flatness, elongation and diameter. New shape descriptors are easy-to-measure and can be more easily characterized than sphericity. The new correlation has an average error of $\sim 10\%$, which is significantly lower than errors associated with existing correlations. Additional aspects of particle sedimentation is also investigated. First, it is found that particles falling in dense liquids, in particular at $Re>1000$, tend to fall with their maximum projection area perpendicular to their falling direction, whereas in gases their orientation is random. Second, effects of small-scale surface vesicularity and roughness on the drag coefficient of non-spherical particles found to be $<10\%$. Finally, the effect of particle orientation on the drag coefficient is discussed and additional correlations are presented to predict the end members of drag coefficient due to change in the particle orientation.
Theory of asymptotic operation. A summary of basic principles
Creators: name: Tkachov, Fyodor V.
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: This summary of several talks given in 1990-1993 discusses the problem of asymptotic expansions of multiloop Feynman diagrams in masses and external momenta - a central problem in perturbative quantum field theory. Basic principles of the theory of asymptotic operation -- the most powerful tool for that purpose -- are discussed. Its connection with the conventional methods is explained (the BPHZ theory, the method of leading logarithmic approximation etc.). The problem of non-euclidean asymptotic regimes is discussed as well as ways of its solution.
description: 29p PS. Earlier versions of the same text in: Workshop "New Calc. Techniques (ETH, 1992)" and Sov.J.Nucl.Phys. 56 (1993) 180. New compared to versions of 1992/3: simple example on pp.12-14. 8-nov-98: maintenance (typos, PS, upd refs). 23-nov-98: missing symbols fixed
Family-group names of fossil fishes
Creators: name: Laan, Richard Van Der
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy

description: Family †Kuyangichthyidae Liu, Ma & Liu 1982
 †Kuyangichthyidae Liu, Ma & Liu 1982: 101 (family) † Kuyangichthys Liu, Ma & Liu 1982
description: Published as part of Laan, Richard Van Der, 2018, Family-group names of fossil fishes, pp. 1-167 in European Journal of Taxonomy 466 on page 63, DOI: 10.5852/ejt.2018.466, http://zenodo.org/record/5557557
The sound of many hands clapping
Creators: name: Neda, Z.
name: Ravasz, E.
name: Brechet, Y.
name: Vicsek, T.
name: Barabasi, A. L.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: We report on a series of measurements aimed to characterize the development and the dynamics of the rhythmic applause in concert halls. Our results demonstrate that while this process shares many characteristics of other systems that are known to synchronize, it also has features that are unexpected and unaccounted for in many other systems. In particular, we find that the mechanism lying at the heart of the synchronization process is the period doubling of the clapping rhythm. The characteristic interplay between synchronized and unsynchronized regimes during the applause is the result of a frustration in the systems. All results are understandable in the framework of the Kuramoto model.
description: Revtex, 5 pages, 1 figure
Lycopteridae Cockerell 1924
Creators: name: Laan, Richard Van Der
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Osteoglossiformes
Lycopteridae

description: Family † Lycopteridae Cockerell 1924
 † Lycopteridae Cockerell 1924: 131 (family) † Lycoptera Müller 1848 †Manchurichthynae [†Manchurichthyinae] Takai 1944: 248 (subfamily) † Manchurichthys Saito 1936 [correct stem is Manchurichthy-]
description: Published as part of Laan, Richard Van Der, 2018, Family-group names of fossil fishes, pp. 1-167 in European Journal of Taxonomy 466 on page 63, DOI: 10.5852/ejt.2018.466, http://zenodo.org/record/5557557
RAB11A constrains YAP signaling and proliferative response in mature intestinal epithelium
Creators: name: Goswami, Sayantani
Publisher: name: No Publisher Supplied
Year: 2021

description: The maintenance of apical and basolateral cell polarity in mature epithelial tissue is essential for the tissue homeostasis and function. Cellular polarity is actively maintained by a dedicated group of proteins called the Rab small GTPases, which typically reside in membrane-bound intracellular organelles to engage in the sorting and trafficking of distinct protein and membrane cargoes. Rab11a is a specialized Rab small GTPase that represents an integral component of the recycling endosome. Previous studies in cultured mammalian cells have established Rab11a’s essential role in the formation and maintenance of cellular polarity. However, the in-vivo contribution of Rab11a function to epithelial physiology and pathology remains poorly understood. We have used mouse genetic approach to study the impact of Rab11a loss-of-function on intestinal homeostasis and tumorigenesis. We found that mice with intestinal epithelial loss of Rab11a exhibited early onset of epithelial dysplasia, which synergizes with various risk factors, including aging, chemical carcinogen, and oncogenic pathways to accelerate tumor progression. We found that colorectal cancer tissues with reduced RAB11A displayed poorer survival rates. Mechanistically, transcriptomic analysis of Rab11a-deficient intestinal epithelium uncovered an expansion of the intestinal stem cell signature immediate after Rab11a deletion, and this was accompanied by cell-autonomous activation of Yes-Associated Protein (YAP), the Hippo signaling transducer. Further analysis revealed that human or mouse intestinal epithelial cells lacking RAB11A exhibited diminished YAP phosphorylation, marked nuclear YAP translocation, enhanced IL6-Stat3 and amphiregulin-MAPK signaling activities. Additional cell biology and biochemical investigation demonstrated that RAB11A is critical for YAP to complex with adherens and tight junction components, including α and β-catenin, as well as scaffolding proteins Merlin and AMOTL-2. A novel association between RAB11A and Merlin was identified by us, and Merlin knockdown largely recapitulated RAB11A-deficient changes including YAP activation and cellular hyper-proliferation. Enhanced YAP and β-catenin complexing and nuclear translocation were also demonstrated by us in cells lacking RAB11A. As YAP is physiologically important for epithelial repair, we further demonstrated that mice lacking intestinal epithelial Rab11a were highly susceptible to DSS mediated colonic mucosal injury, and the phenotype likely attributed to an impaired junctional restoration in the injured colon due to abnormal YAP transport to the junction. Our studies suggested that RAB11A-containing recycling endosomes in mature epithelia constitute a key regulatory domain to suppress abnormal growth, restore epithelial junction and barrier integrity after injury via regulating multiple cytokine and growth factor signaling cascades.
Energy Spectrum of a Relativistic Two-dimensional Hydrogen-like Atom in a Constant Magnetic Field of arbitrary strength
Creators: name: Villalba, V. M.
name: Pino, R.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We compute, via a variational mixed-base method, the energy spectrum of a two dimensional relativistic atom in the presence of a constant magnetic field of arbitrary strength. The results are compared to those obtained in the non-relativistic and spinless case. We find that the relativistic spectrum does not present $s$ states.
description: 20 pages, Latex. To appear in Physica E
Family-group names of fossil fishes
Creators: name: Laan, Richard Van Der
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy

description: Family †Wakinichthyidae Yabumoto 1994
 †Wakinichthiidae [†Wakinichthyidae] Yabumoto 1994: 179 (family) † Wakinichthys Yabumoto 1994 [correct stem is Wakinichthy-; family name sometimes seen as †Wakinichthidae or †Wakinoichthidae]
description: Published as part of Laan, Richard Van Der, 2018, Family-group names of fossil fishes, pp. 1-167 in European Journal of Taxonomy 466 on page 63, DOI: 10.5852/ejt.2018.466, http://zenodo.org/record/5557557
Additional file 1: of Letrozole treatment of adult female mice results in a similar reproductive phenotype but distinct changes in metabolism and the gut microbiome compared to pubertal mice
Creators: name: Torres, Pedro
name: Danalea Skarra
name: Ho, Bryan
name: Sau, Lillian
name: Arya Anvar
name: Kelley, Scott
name: Varykina Thackray
Publisher: name: figshare
Year: 2019
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Physiology
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology

description: Figure S1. No differences in gut microbial community diversity between placebo and letrozole-treated mice were observed prior to treatment. No significant differences in gut microbiome alpha diversity (Faith’s PD) between placebo- and letrozole-treated mice were observed prior to treatment (week 0) in the pubertal (placebo n = 10, letrozole n = 10) (A) or adult (placebo n = 8, letrozole n = 6) (B) model. Similarly, no differences in beta diversity (unweighted UniFrac) were observed between placebo- and letrozole-treated mice prior to treatment in the pubertal (C) or adult model (D). Student t-test was used to compare alpha diversity between groups and Analysis of Similarity (ANOSIM) test was used to compare beta diversity between groups. (PDF 1335 kb)
Additional file 7 of Interleukin-17A pretreatment attenuates the anti-hepatitis B virus efficacy of interferon-alpha by reducing activation of the interferon-stimulated gene factor 3 transcriptional complex in hepatitis B virus-expressing HepG2 cells
Creators: name: Zhang, Jiaxuan
name: Liu, Kai
name: Zhang, Gaoli
name: Ling, Ning
name: Chen, Min
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Additional file 7: Figure S5. Inhibitor-mediated reduced JAK1 activity abolished the effect of IL-17A on the anti-HBV activity of IFN-α.
Hiodontidae Valenciennes 1847
Creators: name: Laan, Richard Van Der
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Osteoglossiformes
Hiodontidae

description: Family Hiodontidae Valenciennes 1847
 †Jiaohichthyidae Ma 1983: 28 (family) † Jiaohichthys Ma 1983
description: Published as part of Laan, Richard Van Der, 2018, Family-group names of fossil fishes, pp. 1-167 in European Journal of Taxonomy 466 on page 63, DOI: 10.5852/ejt.2018.466, http://zenodo.org/record/5557557
Parallel Clustering of Single Cell Transcriptomic Data with Split-Merge Sampling on Dirichlet Process Mixtures
Creators: name: Duan, Tiehang
name: Pinto, José P.
name: Xie, Xiaohui
Publisher: name: arXiv
Year: 2018
Subjects: subject: Machine Learning (cs.LG)
subject: Genomics (q-bio.GN)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences
subject: FOS: Biological sciences

description: Motivation: With the development of droplet based systems, massive single cell transcriptome data has become available, which enables analysis of cellular and molecular processes at single cell resolution and is instrumental to understanding many biological processes. While state-of-the-art clustering methods have been applied to the data, they face challenges in the following aspects: (1) the clustering quality still needs to be improved; (2) most models need prior knowledge on number of clusters, which is not always available; (3) there is a demand for faster computational speed. Results: We propose to tackle these challenges with Parallel Split Merge Sampling on Dirichlet Process Mixture Model (the Para-DPMM model). Unlike classic DPMM methods that perform sampling on each single data point, the split merge mechanism samples on the cluster level, which significantly improves convergence and optimality of the result. The model is highly parallelized and can utilize the computing power of high performance computing (HPC) clusters, enabling massive clustering on huge datasets. Experiment results show the model outperforms current widely used models in both clustering quality and computational speed. Availability: Source code is publicly available on https://github.com/tiehangd/Para_DPMM/tree/master/Para_DPMM_package
description: Accepted for Bioinformatics Oxford
Bunching Transitions on Vicinal Surfaces and Quantum N-mers
Creators: name: Shenoy, V. B.
name: Zhang, Shiwei
name: Saam, W. F.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: We study vicinal crystal surfaces with the terrace-step-kink model on a discrete lattice. Including both a short-ranged attractive interaction and a long-ranged repulsive interaction arising from elastic forces, we discover a series of phases in which steps coalesce into bunches of n steps each. The value of n varies with temperature and the ratio of short to long range interaction strengths. We propose that the bunch phases have been observed in very recent experiments on Si surfaces. Within the context of a mapping of the model to a system of bosons on a 1D lattice, the bunch phases appear as quantum n-mers.
description: 5 pages, RevTex; to appear in Phys. Rev. Lett
ADVANCING SCIENCE IN INDONESIA: CURRENT GLOBAL RESEARCH PRACTICES
Creators: name: Astadi Pangarso
Publisher: name: Zenodo
Year: 2019
Subjects: Center for Open Science
Research

description: Web-based seminar yang bertujuan untuk mendiskusikan strategi pengembangan ekosistem riset di Indonesia bersama peneliti terkemuka kelas dunia (peserta akan diberikan sertifikat). Waktu: Senin, 21 Oktober 2019, pukul 09.00 - 12.30 WIB (termasuk jam istirahat) Tempat: Universitas di seluruh Indonesia yang menjadi co-host
description: {"references": ["https://www.webinarsains2019.com/"]}
Meissner - London state in superconductors of rectangular cross-section in perpendicular magnetic field
Creators: name: Prozorov, R.
name: Giannetta, R. W.
name: Carrington, A.
name: Araujo-Moreira, F. M.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: The distribution of magnetic induction in Meissner state with finite London penetration depth is analyzed for platelet samples of rectangular cross-section in a perpendicular magnetic field. The exact 2D numerical solution of the London equation is extended analytically to the realistic 3D case. Data obtained on Nb cylinders and foils as well as single crystals of YBCO and BSCCO are in a good agreement with the model. The results are particularly relevant for magnetic susceptibility, rf and microwave resonator measurements of the magnetic penetration depth in high-Tc superconductors.
description: submitted to Phys. Rev. B
Ostariostomidae Schaeffer 1949
Creators: name: Laan, Richard Van Der
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Osteoglossiformes
Ostariostomidae

description: Family † Ostariostomidae Schaeffer 1949
 † Ostariostomidae Schaeffer 1949: 3 (family) † Ostariostoma Schaeffer 1949
description: Published as part of Laan, Richard Van Der, 2018, Family-group names of fossil fishes, pp. 1-167 in European Journal of Taxonomy 466 on page 63, DOI: 10.5852/ejt.2018.466, http://zenodo.org/record/5557557
Threshold electric field in unconventional density waves
Creators: name: Dóra, Balázs
name: Virosztek, Attila
name: Maki, Kazumi
Publisher: name: arXiv
Year: 2001
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: As it is well known most of charge density wave (CDW) and spin density wave (SDW) exhibit the nonlinear transport with well defined threshold electric field E_T. Here we study theoretically the threshold electric field of unconventional density waves. We find that the threshold field increases monotonically with temperature without divergent behaviour at T_c, unlike the one in conventional CDW. The present result in the 3D weak pinning limit appears to describe rather well the threshold electric field observed recently in the low-temperature phase (LTP) of alpha-(BEDT-TTF)_2KHg(SCN)_4.
description: 4 pages, 2 figures
The effect of dust composition and shape on radiation-pressure forces and blowout sizes of particles in debris disks
Creators: name: Arnold, Jessica A.
name: Weinberger, Alycia J.
name: Videen, Gorden
name: Zubko, Evgenij S.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: The light scattered from dust grains in debris disks is typically modeled as compact spheres using Lorenz-Mie theory or as porous spheres by incorporating an effective medium theory. In this work we examine the effect of incorporating a more realistic particle morphology on estimated radiation-pressure blowout sizes. To calculate the scattering and absorption cross sections of irregularly shaped dust grains, we use the discrete dipole approximation. These cross sections are necessary to calculate the $β$-ratio, which determines whether dust grains can remain gravitationally bound to their star. We calculate blowout sizes for a range of stellar spectral types corresponding with stars known to host debris disks. As with compact spheres, more luminous stars blow out larger irregularly shaped dust grains. We also find that dust grain composition influences blowout size such that absorptive grains are more readily removed from the disk. Moreover, the difference between blowout sizes calculated assuming spherical particles versus particle morphologies more representative of real dust particles is compositionally dependent as well, with blowout size estimates diverging further for transparent grains. We find that the blowout sizes calculated have a strong dependence on the particle model used, with differences in the blowout size calculated being as large as an order of magnitude for particles of similar porosities.
description: 25 pages, 11 figures, Accepted for publication in AJ
MOESM1 of Quantitative assessment of disease markers using the naked eye: point-of-care testing with gas generation-based biosensor immunochromatographic strips
Creators: name: Fu, Qiangqiang
name: Wu, Ze
name: Li, Jingxia
name: Wu, Zengfeng
name: Zhong, Hui
name: Yang, Quanli
name: Liu, Qihui
name: Liu, Zonghua
name: Sheng, Lianghe
name: Xu, Meng
name: Li, Tingting
name: Yin, Zhinan
name: Wu, Yangzhe
Publisher: name: figshare
Year: 2019
Subjects: Biophysics
Biochemistry
Medicine
Cell Biology
Molecular Biology
Biological Sciences not elsewhere classified
Science Policy

description: Additional file 1: Figure S1. Assembly process of gas generation based biosensors. Figure S2. TEM results of AuNPs. Figure S3. Concentration-dependant fluorescence intensities of ICSs for CRP test. Figure S4. Calibration curve of fluorescence ICSs for CRP test. Figure S5. Results of AuNPs ICSs for CRP test. Figure S6. Calibration curve of AuNPs ICSs for CRP test. Figure S7. Storage time of G-ICSs for CRP test. Table S1. Comparison of CRP test in serum samples by G-ICSs and chemiluminescent immunoassay (CL). Figure S8. Specificity of G-ICSs for CRP testing. Figure S9. Non-specific binding occurs when using G-ICSs to detect CRP at serum.
Huashiidae Chang & Chou 1974
Creators: name: Laan, Richard Van Der
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Osteoglossiformes
Huashiidae

description: Family † Huashiidae Chang & Chou 1974
 † Huashiidae Chang & Chou 1974: 185 (family) † Huashia Chang & Chou 1974 [also Chang & Chou 1977: 39, 57]
description: Published as part of Laan, Richard Van Der, 2018, Family-group names of fossil fishes, pp. 1-167 in European Journal of Taxonomy 466 on page 63, DOI: 10.5852/ejt.2018.466, http://zenodo.org/record/5557557
Creeping flow of micropolar fluid parallel to the axis of cylindrical cells with porous layer
Creators: name: Khanukaeva, D. Yu.
name: Filippov, A. N.
name: Yadav, P. K.
name: Tiwari, A.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences
subject: 76S05

description: The present paper considers the flow of micropolar fluid through a membrane modeled as a swarm of solid cylindrical particles with porous layer using the cell model technique. Traditional boundary conditions on hypothetical cell surface were added with an additional condition: the no spin condition / no couple stress condition. Expressions for velocity and microrotation vector components have been obtained analytically. Effect of various parameters such as particle volume fraction, permeability parameter, micropolarity number etc. on hydrodynamic permeability of membrane has been discussed.
description: Submitted to the European Journal of Mechanics/B Fluids on the 8th of April, 2018
Design, mechanical behavior, and 3D printing defects of a variable density lattice compressor impeller
Creators: name: Zhang, Yuan
name: Zhang, Liang
name: Xu, Wu
name: Mei, Yuheng
name: Lv, Boyang
name: Wu, Zhiyuan
name: Xu, Hong
name: Ma, Mengxin
name: Li, Fanchun
name: Liu, Xiaohu
Publisher: name: Taylor & Francis
Year: 2025
Subjects: Biophysics
Space Science
Molecular Biology
Biological Sciences not elsewhere classified
Science Policy
Plasma Physics

description: This article proposes a novel compressor impeller design strategy – Variable Density Lattice Impeller (Impv). We investigate its design schemes and influencing factors in vacuum and gas environments, along with its mechanical behavior and 3D printing performance. Results show that this strategy is feasible in both environments, effectively reducing impeller weight while maintaining performance close to the original design, with the Oct-SCCZ design being optimal. The lattice domain is prone to 3D printing defects, particularly warping and adhesion. Increasing cell size reduces over-melting, SC design decreases warping, and reducing lattice density intervals minimizes powder adhesion.
On some functional generalizations of the regularity of topological spaces
Creators: name: Banakh, Taras
name: Bokalo, Bogdan
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Topology (math.GN)
subject: FOS: Mathematics
subject: 54C08, 54D10

description: We introduce and study some generalizations of regular spaces, which were motivated by studying continuity properties of functions between (regular) topological spaces. In particular, we prove that a first-countable Hausdorff topological space is regular if and only if it does not contain a topological copy of the Gutik hedgehog.
description: 7 pages
Pantodontidae Peters 1876
Creators: name: Laan, Richard Van Der
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Osteoglossiformes
Pantodontidae

description: Family Pantodontidae Peters 1876
 † Singididae Greenwood & Patterson 1967: 213 (family) † Singida Greenwood & Patterson 1967
description: Published as part of Laan, Richard Van Der, 2018, Family-group names of fossil fishes, pp. 1-167 in European Journal of Taxonomy 466 on page 63, DOI: 10.5852/ejt.2018.466, http://zenodo.org/record/5557557
Phase-Ordering Dynamics with an Order-Parameter-Dependent Mobility: The Large-n Limit
Creators: name: Emmott, C. L.
name: Bray, A. J.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: The effect of an order-parameter dependent mobility (or kinetic coefficient), on the phase-ordering dynamics of a system described by an n-component vector order parameter is addressed at zero temperature in the large-n limit. We consider cases in which the mobility or kinetic coefficient vanishes when the magnitude of the order parameter takes its equilibrium value. In the large-n limit, the system is exactly soluble for both conserved and non-conserved order parameter. In the non-conserved case, the scaling form for the correlation function and it's Fourier transform, the structure factor, is established, with the characteristic length growing as a power of time. In the conserved case, the structure factor is evaluated and found to exhibit a multi-scaling behaviour, with two growing length scales differing by a logarithmic factor. In both cases, the rate of growth of the length scales depends on the manner in which the mobility or kinetic coefficient vanishes as the magnitude of the order parameter approaches its equilibrium value.
description: 5 pages, no figures
Unusual scaling for pulsed laser deposition
Creators: name: Hinnemann, Berit
name: Hinrichsen, Haye
name: Wolf, Dietrich E.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We demonstrate that a simple model for pulsed laser deposition exhibits an unusual type of scaling behavior for the island density in the submonolayer regime. This quantity is studied as function of pulse intensity and deposition time. We find a data collapse for the ratios of the logarithms of these quantities, whereas conventional scaling as observed in molecular beam epitaxy involves ratios of powers.
description: RevTex, 4 pages, 4 eps figures
Arsenic cmQTL
Creators: name: O'Connor, Callan
name: Keele, Gregory R
name: Gatti, Daniel
name: Martin, Whitney
name: Stodola, Tim
name: Hoffman, Brian
name: Churchill, Gary
name: Korstanje, Ron
name: Reinholdt, Laura
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 310506
subject: Gene mapping
classificationCode: 310509
subject: Genomics

description: A high content imaging approach to studying the genetics of chemical exposure using dose response modeling of MMAIII-induced cell morphological changes.
Osteoglossidae Bonaparte 1845
Creators: name: Laan, Richard Van Der
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Osteoglossiformes
Osteoglossidae

description: Family Osteoglossidae Bonaparte 1845
 †Phareodontidae Jordan 1925a: 232 (family) † Phareodus Leidy 1873 [family name sometimes seen as †Phareodidae]
 †Brychaetidae Bonde 1966: 199 (family) † Brychaetus Woodward 1901
 †Laeliichthyinae Silva Santos 1985b: 161 (subfamily) † Laeliichthys Silva Santos 1985 † Foreyichthyidae Taverne 1998: 67 (family) Foreyichthys Taverne 1979
description: Published as part of Laan, Richard Van Der, 2018, Family-group names of fossil fishes, pp. 1-167 in European Journal of Taxonomy 466 on page 63, DOI: 10.5852/ejt.2018.466, http://zenodo.org/record/5557557
Molecular Dynamics Simulations of Dynamic Force Microscopy: Applications to the Si(111)-7x7 Surface
Creators: name: Abdurixit, Abduxukur
name: Baratoff, Alexis
name: Meyer, Ernest
Publisher: name: arXiv
Year: 2000
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Molecular dynamics simulations have been performed to understand true atomic resolution, which has been observed on the Si(111)-7$\times$7 surface by dynamic force microscopy in ultra high vacuum(UHV). Stable atomic-scale contrast is reproduced in simulations at constant mean height above a critical tip-sample separation when monitoring the interaction force between tip and sample. Missing or additional adatoms can be recognized in such scans, although they are less well resolved than native adatoms. The resonance frequency shift, as well as arbitrary scans, e.g. at constant force can be computed from a series of force-distance characteristics. By means of dynamic simulations we show how energy losses induced by interaction with an oscillating tip can be monitored and that they occur even in the non-contact range.
description: 5 pages, 5 figures, accepted publication in Applied Surface Science
SOIL ORGANIC CARBON IN MID-ATLANTIC REGION FOREST SOILS: STOCKS AND VERTICAL DISTRIBUTION
Creators: name: Colopietro, Daniel John
Publisher: name: Digital Repository at the University of Maryland
Year: 2019
Subjects: subject: Soil sciences
subject: Environmental science

description: Soil contains the largest terrestrial pool of organic carbon (Boschi et al., 2018) and temperate forest soils have been a major sink for atmospheric carbon; however, determining the size of the soil organic carbon stock can be problematic. Sampling practices vary for sampling depth, and determining the density of the soil. The aforementioned standard practices need to be revised if the size of SOC stocks are to be accurately quantified, to establish a global SOC baseline. A soil monitoring of 414 forested sites within 11 national parks in the National Capital Region (Schmit, 2014) was conducted over 10 years. Samples were collected from the leaf litter and each soil horizon to 1 meter depth. Soil bulk density (Db) was determined by the core method for the A horizons, and proxy Db values were investigated for the subsoil. The vertical distribution of SOC concentration and stocks were evaluated with respect to soil order, physiographic region/landform, drainage class and parent material.
QCD2-Screening, Confinement and Novel non-abelian Solutions
Creators: name: Frishman, Yitzhak
name: Sonnenschein, Jacob
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We analyze the question of screening versus confinement in bosonized massless QCD in two dimensions. We deduce the screening behavior of massless $SU(N_c)$ QCD with flavored fundamental fermions and fermions in the adjoint representation. This is done by computing the potential between external quarks as well as by bosonizing also the external sources and analyzing the states of the combined system. We write down novel "non-abelian Schwinger like" solutions of the equations of motion, compute their masses and argue that an exchange of massive modes of this type is associated with the screening mechanism.
description: 25 pages,TeX,phyzzx. A reference was added
Multiplicity spectra in $e^{+}e^{-}$ and $\overline{p}p$ collisions in terms of Tsallis and Weibull distributions
Creators: name: Sharma, S.
name: Kaur, M.
name: Thakur, S.
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Charged hadron production in the $e^{+}e^{-}$ annihilations at 91 to 206 GeV in full phase space and in $\overline{p}p$ collisions at 200 to 900~GeV collision energies are studied using non-extensive Tsallis and stochastic Weibull probability distributions.~The Tsallis distribution shows better description of the data than the Weibull distribution. The 2-jet modification of the statistical distribution is applied to describe $e^{+}e^{-}$ data.~The main features of these distributions can be described by a two-component model with soft, collective interactions at low transverse energy and hard, constituent interactions dominating at high transverse energy.~This modification is found to give much better description than a full-sample fit, and again Tsallis function is found to better describe the data than the Weibull one pointing at the non-extensive character of the multiparticle production process.
description: 20 pages, 8 figures
Fabrication of mesoscopic Nb wires using conventional e-beam lithographic techniques
Creators: name: Kim, Nam
name: Hansen, Klavs
name: Toppari, Jussi
name: Suppula, Tarmo
name: Pekola, Jukka
Publisher: name: arXiv
Year: 2001
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Conventional electron beam lithography has been used to fabricate mesoscopic Nb wires with a superconducting transition temperature above 7.0 K. The typical line width and the thickness were 200 nm and 45 nm respectively. Nb was deposited in an ultra-high vacuum evaporation chamber using electron gun heating. All samples exhibited a normal-superconducting transition. The transition temperature decreased with thickness and line width. To demonstrate the feasibility of two angle evaporation techniques we also fabricated small Nb/(Al-)AlO_x/Nb tunnel junctions.
description: 3 pages, 4 figures
Additional file 6: of Antisense oligonucleotide targeting CD39 improves anti-tumor T cell immunity
Creators: name: Abhishek Kashyap
name: Thelemann, Tamara
name: Klar, Richard
name: Kallert, Sandra
name: Festag, Julia
name: Buchi, Melanie
name: Hinterwimmer, Lisa
name: Schell, Monika
name: Michel, Sven
name: Jaschinski, Frank
name: Zippelius, Alfred
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer

description: Figure S4. Intratumoral CD8+ T cell frequency and CD25 expression after treatment with mCD39-specific ASO. (DOCX 326 kb)
Performance analysis of a direct-absorption parabolic trough solar collector
Creators: name: Qin, Caiyan
name: Kim, Joong Bae
name: Lee, Bong Jae
Publisher: name: arXiv
Year: 2018
Subjects: subject: Applied Physics (physics.app-ph)
subject: FOS: Physical sciences

description: A parabolic trough solar collector is a dominant technology for high-temperature industrial applications, but efficient use of a conventional surface-based parabolic trough solar collector (SBPTSC) is limited by its high radiation loss due to the high surface temperature. Recently, direct-absorption parabolic trough solar collector (DAPTSC) using nanofluids has been proposed, and its thermal efficiency has been reported to be 5-10$\%$ higher than the conventional SBPTSC for inlet temperature up to 250$^\circ$C. However, the inner tubes of the receivers of the existing DAPTSCs are all transparent, so the sun rays entering the inner tube can only travel once through the nanofluids. As a result, the optical path length for the sun rays is limited by the inner tube size, which in turn requires high value of the absorption coefficient of nanofluids. Due to the approximately linear relation between the absorption coefficient and the particle concentration, higher absorption coefficient is likely to cause particle agglomeration, leading to detrimental effects on maintaining stable collector performance. In the current study, the transparent DAPTSC is improved by applying a reflective coating on the upper half of the inner tube outer surface, such that the optical path length is doubled compared to the transparent DAPTSC; thus, the absorption coefficient of the nanofluids can be reduced accordingly. The coated DAPTSC is found to have obvious advantage compared to the transparent DAPTSC at absorption coefficient below 0.5 cm$^{-1}$ for a receiver with inner tube diameter of 7 cm. In addition, performance of the transparent DAPTSC, the coated DAPTSC and the SBPTSC with black chrome coating have been compared to explore their advantageous operation conditions, such as inner tube diameter, flow rate, and inlet temperature, with or without a glass envelope for vacuum evacuation.
description: 6 figures
Additional file 3 of Transcriptional, epigenetic and metabolic signatures in cardiometabolic syndrome defined by extreme phenotypes
Creators: name: Seyres, Denis
name: Cabassi, Alessandra
name: Lambourne, John J.
name: Burden, Frances
name: Farrow, Samantha
name: McKinney, Harriet
name: Batista, Joana
name: Kempster, Carly
name: Pietzner, Maik
name: Slingsby, Oliver
name: Cao, Thong Huy
name: Quinn, Paulene A.
name: Stefanucci, Luca
name: Sims, Matthew C.
name: Rehnstrom, Karola
name: Adams, Claire L.
name: Frary, Amy
name: Ergüener, Bekir
name: Kreuzhuber, Roman
name: Mocciaro, Gabriele
name: D’Amore, Simona
name: Koulman, Albert
name: Grassi, Luigi
name: Griffin, Julian L.
name: Ng, Leong Loke
name: Park, Adrian
name: Savage, David B.
name: Langenberg, Claudia
name: Bock, Christoph
name: Downes, Kate
name: Wareham, Nicholas J.
name: Allison, Michael
name: Vacca, Michele
name: Kirk, Paul D. W.
name: Frontini, Mattia
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Computational Biology

description: Additional file 3: Fig. S3. Related to Figure 2—Summary plots of different feature numbers in all comparisons. Barplots showing the number of features significantly different for each comparison in H3K27ac distribution (ChIP-Seq), gene expression (RNA-Seq) and DNA methylation (RRBS). Each bar is colour coded to represent the different cell types.
Report on Environmental, Economic and Social Performance of Current AEFS, and Comparison to Conventional Baseline
Creators: name: Landert, Jan
name: Pfeifer, Catherine
name: Carolus, Johannes
name: Albanito, Fabrizio
name: Müller, Adrian
name: Baumgart, Lukas
name: Blockeel, Johan
name: Schwarz, Gerald
name: Weisshaidinger, Rainer
name: Bartel-Kratochvil, Ruth
name: Hollaus, Alexander
name: Hrabalová, Andrea
name: Helin, Janne
name: Aakkula, Jyrki
name: Svels, Kristina
name: Guisepelli, Emmanuel
name: Fleury, Philippe
name: Vincent, Audrey
name: Smyrniotopoulou, Alexandra
name: Vlahos, George
name: Iordanidis, Yiannis
name: Szilágyi, Alfred
name: Podmaniczky, László
name: Balázs, Katalin
name: Galioto, Francesco
name: Longhitano, Davide
name: Rossignolo, Letizia
name: Povellato, Andrea
name: Zīlāns, Andis
name: Jegelevičius, Gražvydas
name: Frățilă, Mihaela
name: Iragui Yoldi, Uxue
name: Astrain Massa, Carlos
name: Bienzobas Adrian, Jon
name: Resare Sahlin, Kajsa
name: Röös, Elin
name: Frick, Rebekka
name: Bircher, Richard
name: Aalders, Inge
name: Irvine, Katherine N.
name: Kyle, Carol
name: Miller, David
name: Sanders, Jürn
name: Smith, Pete
Publisher: name: Zenodo
Year: 2019

description: The overall aim of the UNISECO project is to provide recommendations on how the sustainability of agro-ecological farming systems (AEFS) in Europe can be promoted. These recommendations build upon multi-actor engagement and practice-validated strategies. The project explores both of these approaches in 15 case studies across Europe. Every case study reflects an AEFS at a certain point of transition towards agro-ecological farming systems. A first step in all of the case studies was to characterize the status quo of the farm systems. Along with other methods to describe the status quo, three decision support tools (DST) were applied in the case studies to provide information on the environmental, economic and social performance of current AEFS. The tools applied were COMPAS, an economic performance assessment tool, Cool Farm Tool, a greenhouse gas inventory tool, and SMART, a multidimensional sustainability tool. This deliverable presents the overall approach taken to assess the farms along the agro-ecological transition, describes the tools, and presents results from their application in the case studies. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement N° 773901.
Family-group names of fossil fishes
Creators: name: Laan, Richard Van Der
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy

description: †Lycoclupeidae Gowda 1967: 119, 123 (family)
 † Lycoclupea Gowda 1967
description: Published as part of Laan, Richard Van Der, 2018, Family-group names of fossil fishes, pp. 1-167 in European Journal of Taxonomy 466 on page 64, DOI: 10.5852/ejt.2018.466, http://zenodo.org/record/5557557
Mean-Field Theory for Spin Ladders Using Angular-Momentum Coupled Bases
Creators: name: Piekarewicz, J.
name: Shepard, J. R.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We study properties of two-leg Heisenberg spin ladders in a mean-field approximation using a variety of angular-momentum coupled bases. The mean-field theory proposed by Gopalan, Rice, and Sigrist, which uses a rung basis, assumes that the mean-field ground state consists of a condensate of spin-singlets along the rungs of the ladder. We generalize this approach to larger angular-momentum coupled bases which incorporate---by their mere definition---a substantial fraction of the important short-range structure of these materials. In these bases the mean-field ground-state remains a condensate of spin singlet---but now with each involving a larger fraction of the spins in the ladder. As expected, the ``purity'' of the ground-state, as judged by the condensate fraction, increases with the size of the elementary block defining the basis. Moreover, the coupling to quasiparticle excitations becomes weaker as the size of the elementary block increases. Thus, the weak-coupling limit of the theory becomes an accurate representation of the underlying mean-field dynamics. We illustrate the method by computing static and dynamic properties of two-leg ladders in the various angular-momentum coupled bases.
description: 28 pages with 8 figures