cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Apenesia proxima Kieffer 1904
Creators: name: Alencar, Isabel D. C. C.
name: Azevedo, Celso O.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Bethylidae
Apenesia
Apenesia proxima

description: Apenesia proxima Kieffer, 1904
(Fig. 26F)
Apenesia proxima Kieffer 1904, 41: 364, 367. ♀; Kieffer 1908, 76: 25 (catalog); Kieffer 1914, 41: 392, 396; Gordh & Móczár 1990, 46: 210 (catalog).
Diagnosis. Female. Length 5.0 mm. Color. Body castaneous, metasoma dark castaneous. Mandible with three apical teeth. Clypeus extending back frons, median lobe with apical margin almost straight, apical margin with bristles, median carina absent. Eye dark, oval, with about six facets. Malar space longer than eye size. Frons aciculate, punctures small and very sparse. Head subquadrate with sides subparallel, vertex slightly concave, 1.0 × as long as wide. Dorsal pronotal area with sides nearly parallel, anterior margin with median emargination. Maximum width of metapectal-propodeal complex 1.6 × its minimum width. Mesopleuron without longitudinal carina dividing dorsal and lateral faces. Mesotibia strongly spinose. Metasoma slightly longr than head and mesosoma together, petiole long.
Material examined. Holotype ♀: [PAPUA NEW GUINEA], N. Guinea S. E. Hughibagu, V–IX.91, Loria [coll.] (MSNG).
Comments. The holotype was examined during a visit to MSNG. According to Kieffer (1904), this species is similar to A. nigra.
Distribution. Australian (Papua New Guinea).
description: Published as part of Alencar, Isabel D. C. C. & Azevedo, Celso O., 2020, Revision of the world Apenesia Westwood (Hymenoptera, Bethylidae), pp. 1-72 in Zootaxa 4724 (1) on pages 34-35, DOI: 10.11646/zootaxa.4724.1.1, http://zenodo.org/record/3612936
Vulnerability of New Jersey's Coastal Habitats to Sea Level Rise
Creators: name: No Name Supplied
Publisher: name: Rutgers University, Grant F. Walton Center for Remote Sensing & Spatial Analysis (CRSSA)
Year: 2007

description: Sea level rise is a well documented physical reality that is impacting New Jersey's coastline.  The recent historical levels of sea level rise along the New Jersey coast is generally thought to be about 3-4 mm/yr, while predicted future rates are expected to increase to 6 mm/yr.  The developed nature of New Jersey's coastline makes it vulnerable to flooding and inundation and cause for concern by both government officials and the public alike. This report, examines six specific issues related to coastal vulnerability and future adaptability: to map near shore development; to map the land use/land cover that is vulnerable to tidal surge inundation and flooding; to map the distance from coastal waters to the first developed obstruction (i.e. how far removed is existing development from the surging coastal waters); to map the degree of shoreline alteration due to coastal protection structures; to map where coastal beach and dune habitats are relatively undisturbed; and delineate those portions of our coastal wetland complex that are free to retreat inland as part of the natural landward migration process (i.e., where are coastal wetlands bordered by undeveloped vs. developed uplands).
MOESM3 of Reduction in adverse effects of tracking devices on waterfowl requires better measuring and reporting
Creators: name: Lameris, Thomas
name: Kleyheeg, Erik
Publisher: name: Figshare
Year: 2017
Subjects: subject: Pharmacology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3. Number of studies that report effects and number of studies that find adverse effects ofattachment methods (underlined). Colours denote a “sensitivity” score for different species and attachment methods: green (0 – 33% of studies find negative effects), orange (34 – 66% of studies find negative effects)and red (67 – 100% of studies find negative effects). Note that in some cases this is based on only one studywhich reports (negative) effects.
Liobagrus kingi Tchang 1935
Creators: name: Ye, Enqi
name: Xing, Yingchun
name: Zhang, Chunguang
name: Zhao, Yahui
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Amblycipitidae
Liobagrus
Liobagrus kingi

description: Liobagrus kingi Tchang, 1935 (Fig. 74)
Holotype. 19825 (11673), Jinning County, Yunnan Province, P. R. China, Nov. 22, 1933.
description: Published as part of Ye, Enqi, Xing, Yingchun, Zhang, Chunguang & Zhao, Yahui, 2015, Catalogue of the type specimens in the fish collection of the National Zoological Museum, Institute of Zoology, Chinese Academy of Sciences, Beijing, China, pp. 10-113 in Zootaxa 3962 (1) on page 83, DOI: 10.11646/zootaxa.3962.1.4, http://zenodo.org/record/233837
Additional file 1: of Safety, pharmacokinetics, metabolism and radiation dosimetry of 18F-tetrafluoroborate (18F-TFB) in healthy human subjects
Creators: name: Huailei Jiang
name: Schmit, Nicholas
name: Koenen, Alex
name: Bansal, Aditya
name: Pandey, Mukesh
name: Glynn, Robert
name: Kemp, Bradley
name: Delaney, Kera
name: Dispenzieri, Angela
name: Bakkum-Gamez, Jamie
name: Kah-Whye Peng
name: Russell, Stephen
name: Gunderson, Tina
name: Lowe, Val
name: DeGrado, Timothy
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: Developmental Biology
subject: Mental Health

description: Supplemental material. (DOCX 197Â kb)
Distinguishing host responses, extensive viral dissemination and long-term viral RNA persistence in domestic sheep experimentally infected with Crimean-Congo haemorrhagic fever virus Kosovo Hoti
Creators: name: Li, Hongzhao
name: Pinette, Mathieu
name: Smith, Greg
name: Goolia, Melissa
name: Handel, Katherine
name: Nebroski, Michelle
name: Lung, Oliver
name: Pickering, Bradley S.
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Neuroscience
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Crimean-Congo haemorrhagic fever orthonairovirus (CCHFV) is a tick-borne, risk group 4 pathogen that often causes a severe haemorrhagic disease in humans (CCHF) with high case fatality rates. The virus is believed to be maintained in a tick-vertebrate-tick ecological cycle involving numerous wild and domestic animal species; however the biology of CCHFV infection in these animals remains poorly understood. Here, we experimentally infect domestic sheep with CCHFV Kosovo Hoti, a clinical isolate representing high pathogenicity to humans and increasingly utilized in current research. In the absence of prominent clinical signs, the infection leads to an acute viremia and coinciding viral shedding, fever and markers for potential impairment in liver and kidney functions. A number of host responses distinguish the subclinical infection in sheep versus fatal infection in humans. These include an early reduction of neutrophil recruitment and its chemoattractant, IL-8, in the blood stream of infected sheep, whereas neutrophil infiltration and elevated IL-8 are features of fatal CCHFV infections reported in immunodeficient mice and humans. Several inflammatory cytokines that correlate with poor disease outcomes in humans and have potential to cause vascular dysfunction, a primary hallmark of severe CCHF, are down-regulated or restricted from increasing in sheep. Of particular interest, the detection of CCHFV RNA (including full-length genome) in a variety of sheep tissues long after the acute phase of infection indicates a widespread viral dissemination in the host and suggests a potentially long-term persisting impact of CCHFV infection. These findings reveal previously unrecognized aspects of CCHFV biology in animals.
Apenesia nigra Kieffer 1904
Creators: name: Alencar, Isabel D. C. C.
name: Azevedo, Celso O.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Bethylidae
Apenesia
Apenesia nigra

description: Apenesia nigra Kieffer, 1904
(Fig. 26E)
Apenesia nigra Kieffer 1904, 41: 364–365; Kieffer 1908.76: 25 (catalog); Kieffer 1914, 41: 392–393; Gordh & Móczár 1990, 46: 207 (catalog).
Diagnosis. Female. Length 8.0 mm. Color. Body black except mandible, scape, tibiae and claws reddish, metasoma castaneous. Mandible with two apical teeth, uppermost small. Clypeus short with apical margin of median lobe rounded, median carina short. Eye gray, oval, with about 16 facets. Malar space very short. Frons coriaceous and shining, punctures small and very sparse. Head subquadrate with sides subparallel, vertex almost straight, 0.95 × as long as wide. Dorsal pronotal area with sides parallel, anterior margin with median emargination. Maximum width of metapectal-propodeal complex 1.6 × its minimum width. Mesopleuron without carina dividing dorsal and lateral faces. Mesotibia strongly spinose. Metasoma longer than head and mesosoma together, petiole short.
Material examined. Holotype ♀: Is. S. Thomé, Aqua-Ize, XII.1900, 400– 700m., L. Fea. (MSNG)
Distribution. Afrotropical (São Tomé and Príncipe).
description: Published as part of Alencar, Isabel D. C. C. & Azevedo, Celso O., 2020, Revision of the world Apenesia Westwood (Hymenoptera, Bethylidae), pp. 1-72 in Zootaxa 4724 (1) on page 33, DOI: 10.11646/zootaxa.4724.1.1, http://zenodo.org/record/3612936
Liobagrus xiurenensis Yue 1981
Creators: name: Ye, Enqi
name: Xing, Yingchun
name: Zhang, Chunguang
name: Zhao, Yahui
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Amblycipitidae
Liobagrus
Liobagrus xiurenensis

description: Liobagrus xiurenensis Yue, 1981 (Fig. 75)
= Xiurenbagrus xiurenensis (Yue), 1981
Holotype. 63322 ♂ (751087), Xiurenhe River, Xiuren County, Lipu City, Guangxi Province, P. R. China, May 9, 1975. Allotype: 60291 ♀ (751134), locality with holotype, May 10, 1975.
Paratypes. 60289-60290 (751089, 751133), 60292 (751135), collected with allotype, no date.
description: Published as part of Ye, Enqi, Xing, Yingchun, Zhang, Chunguang & Zhao, Yahui, 2015, Catalogue of the type specimens in the fish collection of the National Zoological Museum, Institute of Zoology, Chinese Academy of Sciences, Beijing, China, pp. 10-113 in Zootaxa 3962 (1) on page 84, DOI: 10.11646/zootaxa.3962.1.4, http://zenodo.org/record/233837
Characterization of genotype V Japanese encephalitis virus isolates from Republic of Korea
Creators: name: Lee, Ah-Ra
name: Kim, Sang-Hyun
name: Hong, Su-Yeon
name: Lee, Sang-Ho
name: Oh, Jae Sang
name: Lee, Kyung Yong
name: Kim, Seong-Jun
name: Ishikawa, Tomohiro
name: Shim, Sang-Mu
name: Lee, Hee Il
name: Seo, Sang-Uk
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Japanese encephalitis (JE), caused by the Japanese encephalitis virus (JEV) infection, continues to pose significant public health challenges worldwide despite efficient vaccines. The virus is classified into five genotypes, among which genotype V (GV) was not detected for a long period after its initial isolation in 1952, until reports emerged from China and the Republic of Korea (ROK) since 2009. The characteristics of the virus are crucial in estimating its potential epidemiological impact. However, characterization of GV JEVs has so far been limited to two strains: Muar, the original isolate, and XZ0934, isolated in China. Two additional ROK GV JEV isolates, NCCP 43279 and NCCP 43413, are currently available, but their characteristics have not been explored. Our phylogenetic analysis revealed that GV virus sequences from the ROK segregate into two clades. NCCP 43279 and NCCP 43413 belong to different clades and exhibit distinct in vitro phenotypes. NCCP 43279 forms larger plaques but demonstrates inefficient propagation in cell culture compared to NCCP 43413. In vivo, NCCP 43279 induces higher morbidity and mortality in mice than NCCP 43413. Notably, NCCP 43279 shows more severe blood–brain barrier damage, suggesting superior brain invasion capabilities. Consistent with its higher virulence, NCCP 43279 displays more pronounced histopathological and immunopathological outcomes. In conclusion, our study confirms that the two ROK isolates are not only classified into different clades but also exhibit distinct in vitro and in vivo characteristics.
Additional file 1: of Long-term Effects of high-doSe pitavaStatin on Diabetogenicity in comparison with atorvastatin in patients with Metabolic syndrome (LESS-DM): study protocol for a randomized controlled trial
Creators: name: Jun-Bean Park
name: Jung, Ji-Hyun
name: Yeonyee Yoon
name: Hack-Lyong Kim
name: Seung-Pyo Lee
name: Hyung-Kwan Kim
name: Kim, Yong-Jin
name: Goo-Yeong Cho
name: Sohn, Dae-Won
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 60506 Virology

description: SPIRIT 2013 checklist: recommended items to address in a clinical trial protocol and related documents. (DOCX 48Â kb)
Teachers' Guide to Education Programs with New Jersey State Parks, Forests, Recreation Areas, Historic Sites and the Forest Resource Education Center
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection (NJDEP), Division of Parks and Forestry
Year: 2007

description: Many of NJ's parks, forests and historic sites offer education programs for school groups, scouts, homeschoolers and other organized groups. This booklet contains a synopsis of these programs at over 21 sites. Many programs are free (unless otherwise noted) and have been correlated with the New Jersey Core Curriculum Content Standards. Some sites offer outreach programs in the off-season to local schools.  Each site description has program information including the lesson title, grade level, length of time and a brief description of the program.
Identification of the VP37 pocket of monkeypox virus as a promising target for pan-orthopoxvirus inhibitors through virtual screening and antiviral assays
Creators: name: Huo, Shuting
name: Wu, Leyun
name: Huang, Baoying
name: Liu, Nan
name: Sun, Jiewei
name: Ye, Fei
name: Deng, Yao
name: Chen, Jing
name: Gong, Likun
name: Zhu, Weiliang
name: Xu, Zhijian
name: Tan, Wenjie
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Identification of the VP37 pocket of monkeypox virus as a promising target for pan-orthopoxvirus inhibitors through virtual screening and antiviral assays
Xiurenbagrus gigas Zhao & Zhang 2004
Creators: name: Ye, Enqi
name: Xing, Yingchun
name: Zhang, Chunguang
name: Zhao, Yahui
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Amblycipitidae
Xiurenbagrus
Xiurenbagrus gigas

description: Xiurenbagrus gigas Zhao & Zhang, 2004 (Fig. 76)
Holotype. 72944 (00120629), Hongshuihe River: Du’an County, Guangxi Province, P. R. China, Mar., 2001. Paratype. 72943 (01030017), 72945-72947 (01030019, 0 1030013, 01030012), collected with holotype.
description: Published as part of Ye, Enqi, Xing, Yingchun, Zhang, Chunguang & Zhao, Yahui, 2015, Catalogue of the type specimens in the fish collection of the National Zoological Museum, Institute of Zoology, Chinese Academy of Sciences, Beijing, China, pp. 10-113 in Zootaxa 3962 (1) on page 85, DOI: 10.11646/zootaxa.3962.1.4, http://zenodo.org/record/233837
Additional file 3: of Comparing microbiotas in the upper aerodigestive and lower respiratory tracts of lambs
Creators: name: Glendinning, Laura
name: Collie, David
name: Wright, Steven
name: Rutherford, Kenny
name: McLachlan, Gerry
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Figure S1. Heatmap of OTUs found in lamb lung fluids, oropharyngeal swabs, PBS and extraction kit reagent-only controls. (DOCX 716Â kb)
Structural insight into broadening SARS-CoV-2 neutralization by an antibody cocktail harboring both NTD and RBD potent antibodies
Creators: name: Jiang, Wenling
name: Jiang, Yanan
name: Sun, Hui
name: Deng, Tingting
name: Yu, Kunyu
name: Fang, Qianjiao
name: Ge, Huimin
name: Lan, Miaoling
name: Lin, Yanling
name: Fang, Zhongyue
name: Zhang, Yali
name: Zhou, Lizhi
name: Li, Tingting
name: Yu, Hai
name: Zheng, Qingbing
name: Li, Shaowei
name: Xia, Ningshao
name: Gu, Ying
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biophysics
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: The continual emergence of highly pathogenic novel coronaviruses and their variants has underscored the importance of neutralizing monoclonal antibodies (mAbs) as a pivotal therapeutic approach. In the present study, we report the specific neutralizing antibodies 13H7 and 9G11, which target the N-terminal domain (NTD) and receptor-binding domain (RBD) of the SARS-CoV-2, respectively. The comparative analysis observed that 13H7 not only neutralizes early variants of concern (VOCs) but also exhibits neutralizing activity against the Omicron sublineage, including BA.4, BA.5, BQ.1, and BQ.1.1. 9G11, as an RBD antibody, also demonstrated remarkable neutralizing efficacy. A cocktail antibody combining 13H7 and 9G11 with the previously reported 3E2 broaden the neutralization spectrum against new variants of the SARS-CoV-2. We elucidated the cryo-EM structure of the complex, clarifying the mechanism of action of the cocktail antibody combination. Additionally, we also emphasized the molecular mechanism between 13H7 and SARS-CoV-2 NTD, revealing the impact of Y144 and H146 residue deletions and mutations on the neutralizing efficacy of 13H7. Taken together, our findings not only offer novel insights into the combination therapy of NTD and RBD neutralizing mAbs but also lay a theoretical foundation for the development of vaccines targeting NTD antibodies, thus providing valuable understanding of alleviating the emergence of SARS-CoV-2 variants.
Distinguishing host responses, extensive viral dissemination and long-term viral RNA persistence in domestic sheep experimentally infected with Crimean-Congo hemorrhagic fever virus Kosovo Hoti
Creators: name: Li, Hongzhao
name: Pinette, Mathieu
name: Smith, Greg
name: Goolia, Melissa
name: Handel, Katherine
name: Nebroski, Michelle
name: Lung, Oliver
name: Pickering, Bradley S
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Crimean-Congo hemorrhagic fever orthonairovirus (CCHFV) is a tick-borne, risk group 4 pathogen that often causes a severe hemorrhagic disease in humans (CCHF) with high case fatality rates. The virus is believed to be maintained in a tick-vertebrate-tick ecological cycle involving numerous wild and domestic animal species; however the biology of CCHFV infection in these animals remains poorly understood. Here, we experimentally infect domestic sheep with CCHFV Kosovo Hoti, a clinical isolate representing high pathogenicity to humans and increasingly utilized in current research. In the absence of prominent clinical signs, the infection leads to an acute viremia and coinciding viral shedding, fever and markers for potential impairment in liver and kidney functions. A number of host responses distinguish the subclinical infection in sheep versus fatal infection in humans. These include an early reduction of neutrophil recruitment and its chemoattractant, IL-8, in the blood stream of infected sheep, whereas neutrophil infiltration and elevated IL-8 are features of fatal CCHFV infections reported in immunodeficient mice and humans. Several inflammatory cytokines that correlate with poor disease outcomes in humans and have potential to cause vascular dysfunction, a primary hallmark of severe CCHF, are down-regulated or restricted from increasing in sheep. Of particular interest, the detection of CCHFV RNA (including full-length genome) in a variety of sheep tissues long after the acute phase of infection indicates a widespread viral dissemination in the host and suggests a potentially long-term persisting impact of CCHFV infection. These findings reveal previously unrecognized aspects of CCHFV biology in animals.
Numb-associated kinases regulate sandfly-borne Toscana virus entry.
Creators: name: Moalem, Yarden
name: Katz, Rodolfo
name: Subramaniam, Anand G
name: Malis, Yehonathan
name: Yaffe, Yakey
name: Borenstein-Auerbach, Nofit
name: Tadmor, Keshet
name: Raved, Roey
name: Maoz, Ben M.
name: Yoo, Ji Seung
name: Lustig, Yaniv
name: Luxenburg, Chen
name: Perlson, Eran
name: Einav, Shirit
name: Sklan, Ella H.
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Biotechnology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Sandfly-borne Toscana virus (TOSV) is an enveloped tri-segmented negative single-strand RNA Phlebovirus. It is an emerging virus predominantly endemic in southwestern Europe and Northern Africa. Although TOSV infection is typically asymptomatic or results in mild febrile disease, it is neurovirulent and ranks among the three most common causes of summer meningitis in certain regions. Despite this clinical significance, our understanding of the molecular aspects and host factors regulating phlebovirus infection is limited. This study characterized the early steps of TOSV infection. Our findings reveal that two members of the Numb-associated kinases family of Ser/Thr kinases, namely adaptor-associated kinase 1 (AAK1) and cyclin G-associated kinase (GAK), play a role in regulating the early stages of TOSV entry. FDA-approved inhibitors targeting these kinases demonstrated significant inhibition of TOSV infection. This study suggests that AAK1 and GAK represent druggable targets for inhibiting TOSV infection and, potentially, related Phleboviruses.
MOESM3 of A spatial agent-based model of Anopheles vagus for malaria epidemiology: examining the impact of vector control interventions
Creators: name: Md. Alam
name: S. Niaz Arifin
name: Al-Amin, Hasan
name: Alam, Mohammad
name: M. Rahman
Publisher: name: Figshare
Year: 2017
Subjects: subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: Computational Biology

description: Additional file 3. Sample input file (in XML format) for the ABMvagus.
Sodium and Chloride Contamination in Loantaka Brook
Creators: name: No Name Supplied
Publisher: name: The Great Swamp Watershed Association (GSWA)
Year: 2008

description: This report examines Loantaka Brook, which flows for over two miles through Morris County's Loantaka Brook Reservation.  The brook is vulnerable to pollution from several types of land use as it flows southward from its origin near the outskirts of Morristown towards Green Village and the Great Swamp National Wildlife Refuge where it merges with Great Brook.  Previous studies have shown that the stream suffers from excessive levels of phosphorus- and nitrogen-bearing nutrients. Over the last few years, Great Swamp Watershed Association Stream Team staff and volunteers, with the support of Corporate Council members, have sampled the brook regularly at several places to monitor these and other contaminants. One of the striking results of this program has been our finding that, in addition to the high nutrient levels, the water contains unnaturally large amounts of dissolved salt constituents, specifically sodium and chloride. In a portion of the stream, biologically hazardous amounts of chloride, exceeding NJ Surface Water Quality Standards, are consistently found. This report summarize information gathered over a 3-year period showing the magnitude and year-round nature of the salt contamination problem.
Additional file 2: of Critical region within 22q11.2 linked to higher rate of autism spectrum disorder
Creators: name: Clements, Caitlin
name: Wenger, Tara
name: Zoltowski, Alisa
name: Bertollo, Jennifer
name: Miller, Judith
name: Marchena, Ashley De
name: Mitteer, Lauren
name: Carey, John
name: Yerys, Benjamin
name: Zackai, Elaine
name: Emanuel, Beverly
name: McDonald-McGinn, Donna
name: Schultz, Robert
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology

description: This fileÂ depicts higher parent-reported psychiatric symptoms among individuals with nested or classic 22q11.2 duplication or deletions compared to typically developing controls. (DOCX 266Â kb)
Euchiloglanis longicauda Yue 1981
Creators: name: Ye, Enqi
name: Xing, Yingchun
name: Zhang, Chunguang
name: Zhao, Yahui
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Sisoridae
Euchiloglanis
Euchiloglanis longicauda

description: Euchiloglanis longicauda Yue, 1981 (Fig. 77)
= Pareuchiloglanis longicauda (Yue, 1981)
Holotype. 63323 ♂ (750443), Hongshuihe River basin: Panyanghe River, Jiazhuan Community, Bama County, Guangxi Province, P. R. China, Apr. 10, 1975.
Allotype: 60287 ♀ (750440), collected with holotype.
Paratypes. 60288 (750469), 74154 (750442), collected with holotype.
description: Published as part of Ye, Enqi, Xing, Yingchun, Zhang, Chunguang & Zhao, Yahui, 2015, Catalogue of the type specimens in the fish collection of the National Zoological Museum, Institute of Zoology, Chinese Academy of Sciences, Beijing, China, pp. 10-113 in Zootaxa 3962 (1) on page 86, DOI: 10.11646/zootaxa.3962.1.4, http://zenodo.org/record/233837
Additional file 1: of Long-term Effects of high-doSe pitavaStatin on Diabetogenicity in comparison with atorvastatin in patients with Metabolic syndrome (LESS-DM): study protocol for a randomized controlled trial
Creators: name: Jun-Bean Park
name: Jung, Ji-Hyun
name: Yeonyee Yoon
name: Hack-Lyong Kim
name: Seung-Pyo Lee
name: Hyung-Kwan Kim
name: Kim, Yong-Jin
name: Goo-Yeong Cho
name: Sohn, Dae-Won
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: Virology

description: SPIRIT 2013 checklist: recommended items to address in a clinical trial protocol and related documents. (DOCX 48Â kb)
High Ground, Autumn 2007
Creators: name: No Name Supplied
Publisher: name: Highlands Coalition
Year: 2007

description: High Ground is the quarterly newsletter of the Highlands Coalition, an alliance of 180 conservation organizations working to protect the four-state Highlands region as a source of clean drinking water, wildlife habitat and recreational opportunities for millions of Americans. This issue features the following articles: Highlands Conservation Act (HCA) Funding; NJ Highlands Coalition; NJ Highlands Regional Master Plan; and a list of "gains" and "threats" to to the Highlands region.
Transmission characteristics in Tuberculosis by WGS: nationwide cross-sectional surveillance in China
Creators: name: Liu, Dongxin
name: Huang, Fei
name: Li, Yaru
name: Mao, Lingfeng
name: He, Wencong
name: Wu, Sihao
name: Xia, Hui
name: He, Ping
name: Zheng, Huiwen
name: Zhou, Yang
name: Zhao, Bing
name: Ou, Xichao
name: Song, Yuanyuan
name: Song, Zexuan
name: Mei, Li
name: Liu, Li
name: Zhang, Guoliang
name: Wei, Qiang
name: Zhao, Yanlin
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: China, with the third largest share of global tuberculosis cases, faces a substantial challenge in its healthcare system as a result of the high burden of multidrug-resistant and rifampicin-resistant tuberculosis (MDR/RR-TB). This study employs a genomic epidemiological approach to assess recent tuberculosis transmissions between individuals, identifying potential risk factors and discerning the role of transmitted resistant isolates in the emergence of drug-resistant tuberculosis in China. We conducted a population-based retrospective study on 5052 Mycobacterium tuberculosis (MTB) isolates from 70 surveillance sites using whole genome sequencing (WGS). Minimum spanning tree analysis identified resistance mutations, while epidemiological data analysis pinpointed transmission risk factors. Of the 5052 isolates, 23% (1160) formed 452 genomic clusters, with 85.6% (387) of the transmissions occurring within the same counties. Individuals with younger age, larger family size, new cases, smear positive, and MDR/RR were at higher odds for recent transmission, while higher education (university and above) and occupation as a non-physical workers emerged as protective factors. At least 61.4% (251/409) of MDR/RR-TB were likely a result of recent transmission of MDR/RR isolates, with previous treatment (crude OR =  2.77), smear-positive (cOR =  2.07) and larger family population (cOR = 1.13) established as risk factors. Our findings highlight that local transmission remains the predominant form of TB transmission in China. Correspondingly, drug-resistant tuberculosis is primarily driven by the transmission of resistant tuberculosis isolates. Targeted interventions for high-risk populations to interrupt transmission within the country will likely provide an opportunity to reduce the prevalence of both tuberculosis and drug-resistant tuberculosis.
New Jersey Association for Floodplain Management's Testimony Before the New Jersey State Legislature Assembly Statewide Flooding Legislative Panel
Creators: name: No Name Supplied
Publisher: name: New Jersey Association for Floodplain Management, Inc.
Year: 2007

description: This document is a transcript of the New Jersey Association for Floodplain Management's (NJAFM) testimony to the Assembly Statewide Flooding Legislative Panel. NJAFM's aim is to reduce loss of life and property damage resulting from floods and to promote sound floodplain management at all levels of government. In the testimony, NJAFM makes recommendations for improvements in policy and practices that will dramatically improve New Jersey's resilience to flooding and lessen the costs to the public, homeowners and businesses caused by flooding.
Glyptosternum yunnanensis Tchang 1935
Creators: name: Ye, Enqi
name: Xing, Yingchun
name: Zhang, Chunguang
name: Zhao, Yahui
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Siluriformes
Akysidae
Glyptosternum
Glyptosternum yunnanensis

description: Glyptosternum yunnanensis Tchang, 1935 (Fig. 78)
= Pseudexostoma yunnanense (Tchang, 1935)
Paratype (holotype has been lost): 19970 (12021), Dianchi Lake, Kunming City, Yunnan Province, P. R. China, 1934.
description: Published as part of Ye, Enqi, Xing, Yingchun, Zhang, Chunguang & Zhao, Yahui, 2015, Catalogue of the type specimens in the fish collection of the National Zoological Museum, Institute of Zoology, Chinese Academy of Sciences, Beijing, China, pp. 10-113 in Zootaxa 3962 (1) on page 87, DOI: 10.11646/zootaxa.3962.1.4, http://zenodo.org/record/233837
Additional file 2: of Critical region within 22q11.2 linked to higher rate of autism spectrum disorder
Creators: name: Clements, Caitlin
name: Wenger, Tara
name: Zoltowski, Alisa
name: Bertollo, Jennifer
name: Miller, Judith
name: Marchena, Ashley De
name: Mitteer, Lauren
name: Carey, John
name: Yerys, Benjamin
name: Zackai, Elaine
name: Emanuel, Beverly
name: McDonald-McGinn, Donna
name: Schultz, Robert
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy
subject: Mental Health
subject: Hematology

description: This fileÂ depicts higher parent-reported psychiatric symptoms among individuals with nested or classic 22q11.2 duplication or deletions compared to typically developing controls. (DOCX 266Â kb)
Epimeria (Urepimeria) extensa d'Acoz & Verheye 2017, subgen. nov.
Creators: name: d'Acoz, Cédric d'Udekem
name: Verheye, Marie L.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Amphipoda
Epimeriidae
Epimeria
Epimeria extensa

description: Epimeria (Urepimeria) extensa subgen. nov. Andres, 1985
Epimeria extensa Andres, 1985: 125–127, figs 7d–f, 8, 9.
Epimeria extensa – De Broyer & Klages 1991: 164 (key). — Coleman 1994: 574 (table). — Wakabara & Serejo 1999: 644 (key). — Coleman 2007: 36, fig. 15a–f, map 6 (circle).
Body length
11 mm. The species is known by a single specimen and it is possible that it can reach a larger size.
Distribution
Southeast of tip of Antarctic Peninsula, 230– 260 m.
description: Published as part of d'Acoz, Cédric d'Udekem & Verheye, Marie L., 2017, Epimeria of the Southern Ocean with notes on their relatives (Crustacea, Amphipoda, Eusiroidea), pp. 1-553 in European Journal of Taxonomy 359 on page 158, DOI: 10.5852/ejt.2017.359, http://zenodo.org/record/3855694
Disposal Options Report
Creators: name: No Name Supplied
Publisher: name: State of New Jersey, Low-Level Radioactive Waste Disposal Facility Siting Board
Year: 1999

description: This report describes the status of disposal options for Low-Level Radioactive Waste (LLRW) generated in New Jersey and outlines the potential for continued or future access to these and other possible opportunities for out-of-region LLRW disposal.  In June 1998 the Governor requested the Board to "prepare a comprehensive plan and explore all options for the short and long term needs for the funds (Dedicated Radioactive Waste Fund) with sufficient input from affected parties."  In response to that request, a workgroup was formed of members of the Siting Board, Northeast Compact Commission and NJDEP staff to prepare this plan.
Guidance Document for the Remediation of Contaminated Soils
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection (NJDEP)
Year: 1998

description: This guidance document is intended to assist persons (e.g., responsible parties, consultants, businesses, municipalities) conducting remediations in choosing remedial actions which have been determined by NJDEP to be effective or potentially effective in remediating a site for certain contaminants or situations.  It should aid in expediting remediations by reducing the time to prepare remedial action workplans and subsequent NJDEP review. It also is expected to be especially useful when a person elects to proceed with a remedial action without NJDEP oversight.  It includes an extensive, although not comprehensive, list of remedial actions that have proven track records or have been stated as being effective by USEPA for remediating soil impacted by particular contaminants. The document describes four types of remedial actions: excavation, treatment, reuse, and capping.  Each type is described in its own section but is not intended to provide extensive information on sampling or investigative procedures at a site.
Real-Time Surface-Water Monitoring in New Jersey, 2003
Creators: name: No Name Supplied
Publisher: name: U.S. Geological Survey (USGS)
Year: 2003

description: A network of 93 gaging stations that provide surface-water stage, flow (discharge), and tide-level data on a "real-time" basis through satellite, radio, and telephone telemetry is operating (May 2003) in New Jersey through a cooperative effort of the U.S. Geological Survey (USGS) and other agencies. The stream data from these stations is transmitted every 1 to 4 hours and then immediately posted for viewing on the Internet. This fact sheet describes the "real-time" monitoring network, and the equipment used to measure stage and flow and to transmit the data for viewing on the Internet. Instructions for viewing the data are included.
Occurrence of Radium-224, Radium-226 and Radium-228 in Water from the Vincentown and Wenonah-Mount Laurel Aquifers, the Englishtown Aquifer System, and the Hornerstown and Red Bank Sands, Southwestern and South-Central New Jersey
Creators: name: No Name Supplied
Publisher: name: U.S. Geological Survey (USGS)
Year: 2007

description: This report describes the occurrence of gross alpha-particle radioactivity and that of the short-lived isotope of radium, Ra-224 in water in the lesser aquifers in southwestern and south-central New Jersey and compare its distribution to that of the radium isotopes Ra-226 and Ra-228. From 1999 to 2001, water samples were collected from 39 wells. The wells are distributed almost equally among the Vincentown and Wenonah-Mount Laurel aquifers, and the Englishtown aquifer system; one and two samples were collected from the Hornerstown and Red Bank Sands, respectively. Radionuclide concentrations and those of ancillary constituents are detailed in tables. Geological, hydrological, geochemical, and land-use factors that could affect the occurrence of these radionuclides in the water are statistically evaluated. The relations between the occurrence of the radium radionuclides and the concentrations of nitrate in, and the pH of water from, the Vincentown and Wenonah-Mount Laurel aquifers and the Englishtown aquifer system are determined. Lastly, radionuclide distribution in the subregional aquifers is compared to that in the Kirkwood-Cohansey aquifer system.
Propseudecheneis tchangi Hora 1937
Creators: name: Ye, Enqi
name: Xing, Yingchun
name: Zhang, Chunguang
name: Zhao, Yahui
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Siluriformes
Sisoridae
Propseudecheneis
Propseudecheneis tchangi

description: Propseudecheneis tchangi Hora, 1937 (Fig. 79)
= Pseudecheneis tchangi (Hora, 1937)
Holotype. 20010 (12016), Yunnan Province, P. R. China, 1934. Paratype. 20011 (12017), collected with holotype.
description: Published as part of Ye, Enqi, Xing, Yingchun, Zhang, Chunguang & Zhao, Yahui, 2015, Catalogue of the type specimens in the fish collection of the National Zoological Museum, Institute of Zoology, Chinese Academy of Sciences, Beijing, China, pp. 10-113 in Zootaxa 3962 (1) on page 88, DOI: 10.11646/zootaxa.3962.1.4, http://zenodo.org/record/233837
Organic Compounds, Trace Elements, Suspended Sediment, and Field Characteristics at the Heads-of-Tide of the Raritan, Passaic, Hackensack, Rahway, and Elizabeth Rivers, New Jersey, 2000-03
Creators: name: No Name Supplied
Publisher: name: U.S. Geological Survey (USGS)
Year: 2006

description: Concentrations of suspended sediment, particulate and dissolved organic carbon, trace elements, and organic compounds were measured in samples from the heads-of-tide of the five tributaries to the Newark and Raritan Bays during June 2000 to June 2003. The samples were collected as part of the New Jersey Department of Environmental Protection Toxics Reduction Workplan/Contaminant Assessment Reduction Program. Samples of streamwater were collected during base-flow conditions and storms at water-quality sampling stations constructed near U.S. Geological Survey gaging stations on the Raritan, Passaic, Hackensack, Rahway, and Elizabeth Rivers.   Constituent concentrations were measured to determine the water quality and to calculate the load of sediment and contaminants contributed to the bays from upstream sources. The purpose of this report is to describe sample collection techniques, analytical methods, and quality-assurance procedures, and to present data.  Interpretation of the data will be completed in the second phase of the study.
New Jersey Tide Telemetry System
Creators: name: No Name Supplied
Publisher: name: U.S. Geological Survey (USGS)
Year: 2007

description: This is a fact sheet on the New Jersey Tide Telemetry System (NJTTS).  Each summer the population of the barrier-island communities of New Jersey increases by tens of thousands. When a coastal storm threatens these communities, the limited number of bridges and causeways that connect the islands with the mainland become overcrowded, making evacuations from the barrier islands to the mainland difficult. Timely evacuation depends on well-defined emergency evacuation plans used in conjunction with accurate flood forecasting and up to the minute (real-time) tide-level information.  The NJTTS is part of a statewide network of tide gages, weather stations and stream gages that collect data real time.
Spatio-temporal spread of Lassa virus and a new rodent host in the Mano River Union area, West Africa
Creators: name: Bangura, Umaru
name: Davis, Christopher
name: Lamin, Joyce
name: Bangura, James
name: Soropogui, Barré
name: Davison, Andrew J.
name: Nichols, Jenna
name: Vucak, Matej
name: Dawson, Mickael
name: Ansumana, Rashid
name: Sondufu, Dianah
name: Cadar, Dániel
name: Rieger, Toni
name: Thomson, Emma
name: Sahr, Foday
name: Magassouba, N’Faly
name: Ghersi, Bruno
name: Bird, Brian H.
name: Fichet-Calvet, Elisabeth
Publisher: name: Taylor & Francis
Year: 2023
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Physiology
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: The spread of Lassa virus (LASV) in Guinea, Liberia and Sierra Leone, which together are named the Mano River Union (MRU) area, was examined phylogeographically. To provide a reliable evolutionary scenario, new rodent-derived, whole LASV sequences were included. These were generated by metatranscriptomic next-generation sequencing from rodents sampled between 2003 and 2020 in 21 localities of Guinea and Sierra Leone. An analysis was performed using BEAST to perform continuous phylogeographic inference and EvoLaps v36 to visualize spatio-temporal spread. LASV was identified as expected in its primary host reservoir, the Natal multimammate mouse (Mastomys natalensis), and also in two Guinean multimammate mice (Mastomys erythroleucus) in northern Sierra Leone and two rusty-bellied brush-furred mice (Lophuromys sikapusi) in southern Sierra Leone. This finding is consistent with the latter two species being secondary host reservoirs. The strains in these three species were very closely related in LASV lineage IV. Phylogenetic analysis indicated that the most recent common ancestor of lineage IV existed 316-374 years ago and revealed distinct, well-supported clades from Sierra Leone (Bo, Kabala and Kenema), Guinea (Faranah, Kissidougou-Guekedou and Macenta) and Liberia (Phebe-Ganta). The phylogeographic scenario suggests southern Guinea as the point of origin of LASV in the MRU area, with subsequent spread to towards Mali, Liberia and Sierra Leone at a mean speed of 1.6 to 1.1 km/year.
Biotech's role in advancing HIV vaccine development
Creators: name: Tatoud, Roger
name: Brander, Christian
name: Hwang, Carey
name: Kennelly, Jo
name: Lu, Shan
name: O’Neil, Kevin
name: Safrit, Jeffrey T.
name: Benhayoun, Iris
name: Firmat, Julieta
name: Barriere, Nelli
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Medicine
subject: Neuroscience
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: HIV vaccine development has been hindered by significant challenges over four decades. Despite persistent efforts, all efficacy trials to date have yielded disappointing results. This has pushed the field back to the discovery phase and created uncertainty about the future involvement of large pharmaceutical companies. Currently, the HIV vaccine landscape is dominated by startup biotech firms, which face a complex array of obstacles. These include evolving HIV prevention methods, waning interest in vaccine research, and difficulties securing sustainable funding. This viewpoint explores the challenges faced by these biotech companies and the support mechanisms necessary for their continued involvement in HIV vaccine development. By leveraging insights from both pharmaceutical and biotech sectors, we propose a multi-faceted approach that includes enhanced communication, fostering innovation, and implementing strategic funding models.
MOESM1 of Freeze-dried plasma proteins are stable at room temperature for at least 1 year
Creators: name: Dufresne, Jaimie
name: Hoang, Trung
name: Ajambo, Juliet
name: Florentinus-Mefailoski, Angelique
name: Bowden, Peter
name: Marshall, John
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Fig. S1. A replicate CBBR stained gel to confirm the equal loading of the Western blot shown in FigureÂ 8 of the main paper. (see legend of FigureÂ 8 for details).