cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Osteopontin-driven partial epithelial-mesenchymal transition governs the development of middle ear cholesteatoma
Creators: name: Zeng, Lingling
name: Xie, Li
name: Hu, Jin
name: He, Chao
name: Liu, Aiguo
name: Lu, Xiang
name: Zhou, Wen
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Medicine
subject: Cell Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer

description: Cholesteatoma is a common disease of the middle ear. Currently, surgical removal is the only treatment option and patients face a high risk of relapse. The molecular basis of cholesteatoma remains largely unknown. Here, we show that Osteopontin (OPN), a predominantly secreted protein, plays a crucial role in the development of middle ear cholesteatoma. Global transcriptome analysis revealed the loss of epithelial features and an enhanced immune response in human cholesteatoma tissues. Quantitative RT-PCR and immunohistochemical staining of middle ear cholesteatoma validated the reduced expression of epithelial markers, as well as the elevated expression of mesenchymal markers including Vimentin and Fibronectin, but not N-Cadherin, α-smooth muscle actin (α-SMA) or ferroptosis suppressor protein 1 (FSP1), indicating a partial epithelial-mesenchymal transition (EMT) state. Besides, the expression of OPN was significantly elevated in human cholesteatoma tissues. Treatment with OPN promoted cell proliferation, survival and migration and led to a partial EMT in immortalized human keratinocyte cells. Importantly, blockade of OPN signaling could remarkably improve the cholesteatoma-like symptoms in SD rats. Our mechanistic study demonstrated that the AKT-zinc finger E-box binding homeobox 2 (ZEB2) axis mediated the effects of OPN. Overall, these findings suggest that targeting the OPN signaling represents a promising strategy for the treatment of middle ear cholesteatoma.
Additional file 1 of Deciphering potential causative factors for undiagnosed Waardenburg syndrome through multi-data integration
Creators: name: Sun, Fengying
name: Xiao, Minmin
name: Ji, Dong
name: Zheng, Feng
name: Shi, Tieliu
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Supplementary Material 1
A decade of the fast-varying ionospheric and magnetospheric magnetic fields from ground and multi-satellite observations
Creators: name: Min, Jingtao
name: Grayver, Alexander
Publisher: name: arXiv
Year: 2024
Subjects: subject: Space Physics (physics.space-ph)
subject: Geophysics (physics.geo-ph)
subject: FOS: Physical sciences

description: The time-varying geomagnetic field is a superposition of contributions from multiple internal and external current systems. A major source of geomagnetic variations at periods less than a few years are current systems external to the solid Earth, namely the ionospheric and magnetospheric currents, as well as associated induced currents. The separation of these three sources is mathematically underdetermined using either ground or satellite measurements alone, but becomes tractable when the two datasets are combined. Based on this concept, we developed a new geomagnetic field modelling approach that allows us to simultaneously characterise the mid-latitude ionospheric, magnetospheric and the internal induced magnetic fields using ground and satellite observations for all local times and magnetic conditions, and without prescribing any harmonic behaviour on these current systems in time, as is typical in other models. By applying this new method to a 10-year dataset of ground observatory and multi-satellite measurements from 2014 to 2023, we obtained the time series of the spherical harmonic coefficients of the ionospheric, magnetospheric and induced fields. These new time series allow the study of complex non-periodic dynamics of the external magnetic fields during global geomagnetic storms, as well as periodicities in the magnetospheric coefficients linked to solar activities and periodic ionospheric magnetic fields linked to lunar daily variations, contributing to a more complete picture of the dynamics of the external currents and magnetosphere-ionosphere interactions, and facilitating more accurate space weather nowcast and forecast. Finally, the new approach allows for a better characterisation of internal induced field sources, leading to higher quality electromagnetic transfer functions.
description: 49 pages, 21 figures
PGD-Imp: Rethinking and Unleashing Potential of Classic PGD with Dual Strategies for Imperceptible Adversarial Attacks
Creators: name: Li, Jin
name: Yu, Zitong
name: He, Ziqiang
name: Wang, Z. Jane
name: Kang, Xiangui
Publisher: name: arXiv
Year: 2024
Subjects: subject: Machine Learning (cs.LG)
subject: Cryptography and Security (cs.CR)
subject: FOS: Computer and information sciences

description: Imperceptible adversarial attacks have recently attracted increasing research interests. Existing methods typically incorporate external modules or loss terms other than a simple $l_p$-norm into the attack process to achieve imperceptibility, while we argue that such additional designs may not be necessary. In this paper, we rethink the essence of imperceptible attacks and propose two simple yet effective strategies to unleash the potential of PGD, the common and classical attack, for imperceptibility from an optimization perspective. Specifically, the Dynamic Step Size is introduced to find the optimal solution with minimal attack cost towards the decision boundary of the attacked model, and the Adaptive Early Stop strategy is adopted to reduce the redundant strength of adversarial perturbations to the minimum level. The proposed PGD-Imperceptible (PGD-Imp) attack achieves state-of-the-art results in imperceptible adversarial attacks for both untargeted and targeted scenarios. When performing untargeted attacks against ResNet-50, PGD-Imp attains 100$\%$ (+0.3$\%$) ASR, 0.89 (-1.76) $l_2$ distance, and 52.93 (+9.2) PSNR with 57s (-371s) running time, significantly outperforming existing methods.
description: Accepted by IEEE ICASSP 2025. Please cite this paper using the following format: J. Li, Z. Yu, Z. He, Z. Wang, X. Kang, "PGD-Imp: Rethinking and Unleashing Potential of Classic PGD with Dual Strategies for Imperceptible Adversarial Attacks," in proc. of International Conference on Acoustics, Speech, and Signal Processing 2025 (ICASSP 2025), Hyderabad, India, 2025-4-06 to 2025-04-11
NCAPD2 promotes the malignant progression of oral squamous cell carcinoma via the Wnt/β-catenin pathway
Creators: name: Ma, Ping
name: Yu, Huajiao
name: Zhu, Mingda
name: Liu, Li
name: Cheng, Luyao
name: Han, Zhengxue
name: Jin, Wulong
Publisher: name: Taylor & Francis
Year: 2024
Subjects: Biophysics
Biochemistry
Cell Biology
Molecular Biology
Chemical Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Developmental Biology
Cancer
Hematology

description: Oral squamous cell carcinoma (OSCC) is the most common type of oral cancer, with a poor prognosis, yet the underlying mechanism needs further exploration. Non-SMC condensin I complex subunit D2 (NCAPD2) is a widely expressed protein in OSCC, but its role in tumor development is unclear. This study aimed to explore NCAPD2 expression and its biological function in OSCC. NCAPD2 expression in OSCC cell lines and tissue specimens was analyzed using quantitative polymerase chain reaction, western blotting, and immunohistochemistry. Cancer cell growth was evaluated using cell proliferation, 5-Ethynyl-2’-deoxyuridine (EdU) staining, and colony formation assays. Cell migration was evaluated using wound healing and Transwell assays. Apoptosis was detected using flow cytometry. The influence of NCAPD2 on tumor growth in vivo was evaluated in a mouse xenograft model. NCAPD2 expression was significantly higher in OSCC than that in normal oral tissue. In vitro, the knockdown of NCAPD2 inhibited OSCC cell proliferation and promoted apoptosis. NCAPD2 depletion also significantly inhibited the migration of OSCC cells. Moreover, NCAPD2 overexpression induced inverse effects on OSCC cell phenotypes. In vivo, we demonstrated that downregulating NCAPD2 could inhibit the tumorigenicity of OSCC cells. Mechanically, OSCC regulation by NCAPD2 involved the Wnt/β-catenin signaling pathway. These results suggest NCAPD2 as a novel oncogene with an important role in OSCC development and a candidate therapeutic target for OSCC.
UHRF2 accumulates in early G1-phase after serum stimulation or mitotic exit to extend G1 and total cell cycle length
Creators: name: Wang, Xiaohong
name: Lu, Huarui
name: Sprangers, Grace
name: Hallstrom, Timothy C.
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences

description: Ubiquitin like with PHD and ring finger domains 2 (UHRF2) regulates the cell cycle and epigenetics as a multi-domain protein sharing homology with UHRF1. UHRF1 functions with DNMT1 to coordinate daughter strand methylation during DNA replication, but UHRF2 can’t perform this function, and its roles during cell cycle progression are not well defined. UHRF2 role as an oncogene vs. tumor suppressor differs in distinct cell types. UHRF2 interacts with E2F1 to control Cyclin E1 (CCNE1) transcription. UHRF2 also functions in a reciprocal loop with Cyclin E/CDK2 during G1, first as a direct target of CDK2 phosphorylation, but also as an E3-ligase with direct activity toward both Cyclin E and Cyclin D. In this study, we demonstrate that UHRF2 is expressed in early G1 following either serum stimulation out of quiescence or in cells transiting directly out of M-phase, where UHRF2 protein is lost. Further, UHRF2 depletion in G2/M is reversed with a CDK1 specific inhibitor. UHRF2 controls expression levels of cyclins and CDK inhibitors and controls its own transcription in a negative-feedback loop. Deletion of UHRF2 using CRISPR/Cas9 caused a delay in passage through each cell cycle phase. UHRF2 loss culminated in elevated levels of cyclins but also the CDK inhibitor p27KIP1, which regulates G1 passage, to reduce retinoblastoma phosphorylation and increase the amount of time required to reach G1/S passage. Our data indicate that UHRF2 is a central regulator of cell-cycle pacing through its complex regulation of cell cycle gene expression and protein stability.
Additional file 4 of Deciphering potential causative factors for undiagnosed Waardenburg syndrome through multi-data integration
Creators: name: Sun, Fengying
name: Xiao, Minmin
name: Ji, Dong
name: Zheng, Feng
name: Shi, Tieliu
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Supplementary Material 4
Knock down of APE1 suppressed gastric cancer metastasis via improving immune disorders caused by myeloid-derived suppressor cells
Creators: name: Zhang, Baoming
name: Tang, Qiang
name: Shi, Wenchao
name: Bao, Zengtao
name: Gao, Shanting
name: Pan, Cheng
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Gastric cancer is a highly immunogenic malignancy. Immune tolerance facilitated by myeloid-derived suppressor cells (MDSCs) has been implicated in gastric cancer resistance mechanisms. The potential role of APE1 in regulating gastric cancer metastasis by targeting MDSCs remains uncertain. In this study, the plasmid Plxpsp-mGM-CSF was used to induce high expression of granulocyte-macrophage colony-stimulating factor (GM-CSF) in GES-1 cells. For tumor transplantation experiments, AGS, AGS+GM-CSF and AGS+GM-CSF-siAPE1 cell lines were established by transfection, followed by subcutaneous implantation of tumor cells. MDSCs, Treg cells, IgG, CD3 and CD8 levels were assessed. Transfection with siAPE1 significantly inhibited tumor growth compared to the AGS+GM-CSF group. APE1 gene knockdown modulated the immune system in gastric cancer mice, characterized by a decrease in MDSCs and an increase in Treg cells, IgG, CD3 and CD8. In addition, APE1 gene knockdown resulted in decreased levels of pro-MDSC cytokines (HGF, CCL5, IL-6, CCL12). Furthermore, APE1 gene knockdown inhibited proliferation, migration and invasion of AGS and MKN45 cells. AGS-GM-CSF cell transplantation increased MDSC levels and accelerated tumor growth, whereas APE1 knockdown reduced MDSC levels, inhibited tumor growth and attenuated inflammatory infiltration in gastric cancer tissues. Strategies targeting the APE1/MDSC axis offer a promising approach to the prevention and treatment of gastric cancer, providing new insights into its management.
On the Field Theoretical Description of an Alternative Model to Generalized Chaplygin Gas and its Thermodynamic Behaviour
Creators: name: Mukhopadhyay, Tamal
name: Chakraborty, Banadipa
name: Debnath, Ujjal
name: Pradhan, Anirudh
Publisher: name: arXiv
Year: 2024
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: This paper investigates a newly proposed fluid description of dark energy within the framework of the late-time accelerated expansion of the universe. Our primary objective is to explore the theoretical foundation of the proposed equation of state by establishing its correspondence with well-known scalar field models such as quintessence, k-essence, and DBI-essence. Through this correspondence, we reconstruct key field parameters, including the scalar field $ϕ$ and scalar potential $V(ϕ)$, and analyze their evolutionary behavior across cosmic time. The study also evaluates the model's physical consistency and cosmological implications by examining fundamental energy conditions - Null Energy Condition (NEC), Dominant Energy Condition (DEC), and Strong Energy Condition (SEC). Furthermore, we conduct a comprehensive stability analysis to ensure the robustness of the model and investigate its thermodynamic properties, including possible phase transitions using entropy and Gibbs free energy. To assess the observational viability of the model, we compare its predictions against recent datasets, including Cosmic Chronometers (CC), Baryon Acoustic Oscillation (BAO), and Supernova Type Ia from the Pantheon+SH0ES compilation and Union 2.1, as well as recent DESI and DESY5 data. Our analysis demonstrates that the proposed fluid model aligns well with observational constraints, reproduces the late-time acceleration of the universe, and offers a compelling alternative to the standard $Λ$-CDM model while maintaining consistency with current data.
description: 49 pages, 39 figures, All comments are welcome
Additional file 5 of Deciphering potential causative factors for undiagnosed Waardenburg syndrome through multi-data integration
Creators: name: Sun, Fengying
name: Xiao, Minmin
name: Ji, Dong
name: Zheng, Feng
name: Shi, Tieliu
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Supplementary Material 5
Medical Model United Nations (MedMUN): a platform for evidence-based policy debates in the health professions classroom
Creators: name: Godinho, Myron Anthony
name: Murthy, Shruti
name: Ciraj, Ali Mohammed
Publisher: name: F1000Research
Year: 2017

description: Background
Model United Nations (MUN) debates involve simulations in which students play the roles of UN council delegates who debate policy with each other. Students learn to engage democratic processes and structures to enact policy change for societal improvement, often based on evidence. Few curricula teach these skills in developing regions where health leadership in evidence-based policy is needed to strengthen health delivery systems.  Do MUN debates have something to offer health professions education in low-resource settings?

Objective
To identify competency domains addressed by MUN debates, to inform the design of valid outcome measures in future effectiveness assessments.

Methods
The MUN debate model was contextualized for an interprofessional, resource-limited, health professions classroom through discussions with a multidisciplinary faculty team, and a curriculum was formulated. Eight students (4 medical, 1 dental and 3 pre-Med) underwent 1-hour weekly training sessions (for four weeks), which taught policy statement and draft resolution writing, public speaking skills and parliamentary procedure. A customized training module titled ‘Health Evidence Education’ taught them to acquire, appraise, interpret and utilize research evidence to support their policy argument. The debate was held one week after the final training session, and 4 faculty members assessed student performance. Students were interviewed, and exploratory, qualitative methods were employed to thematically analyze their feedback, and develop a conceptual framework.

Results
Leadership, teamwork, and social accountability emerged as dominant themes. Leadership-related subthemes were confidence and public-speaking. Teamwork-related subthemes included student integration and interprofessional education. Decision-making and problem-solving emerged as common subthemes of leadership and teamwork. Social accountability-related subthemes included democracy and a global outlook. Research literacy was a commonly associated theme. One student reported that the initiative led to his involvement in a health research project, and an interest in a research career. Subsequently, interested students organised a second MUN involving 14 delegates.

Conclusion
We learnt that MUN debates help health professions students develop essential leadership, teamwork and communication skills, while promoting social accountability to the global society. For sustainability, debate chairpersons agreed to train their successors before leaving college. Continuing support through remote online training is being explored.
title: Berufsorientierung in der Sekundarstufe II
Creators: name: Wolf, Jennifer Christina
Year: 2010

description: Berufsorientierung in der Sekundarstufe II Die vorliegende Forschungsarbeit beschäftigt sich mit der Frage, welchen Stellenwert vorberufliche Bildung in der AHS- Oberstufe, neben der Vermittlung von Allgemeinbildung, hat. Demzufolge wird das Thema zuerst theoretisch betrachtet und dabei werden Theorien der Berufswahl und Berufswahlfaktoren untersucht und anschließend werden Aspekte der Berufsorientierung erläutert. Danach werden einige aktuelle Modelle oder Schulversuche aus der Praxis angeführt. Im zweiten Teil der Arbeit, werden die LehrerInnen zu diesem Thema mittels eines Fragebogens befragt. Dabei soll die Meinung und Einschätzung der LehrerInnen zu diesem Thema untersucht werden. Das Ziel der Forschungsarbeit ist es, herauszufinden ob LehrerInnen vorberufliche Bildung auch in der AHS- Oberstufe als Wichtigkeit und Notwendigkeit für die SchülerInnen sehen. Durch die Befragung konnte also festgestellt werden, dass die Mehrheit der befragten Personen vorberufliche Bildung als eine wichtige Maßnahme sehen, damit die Jugendlichen für den Weg nach der Reifeprüfung vorbereitet sind. Allerdings haben die meisten LehrerInnen keine Ahnung wie dieses Thema an der Schule umgesetzt oder im Unterricht integriert werden kann, so dass die Jugendlichen für ihre weitere Studiums-oder Berufslaufbahn profitieren. Weiters wird Berufsorientierung als ein längerfristiger Prozess gesehen, doch fehlt es bei der Umsetzung dieses Prozesses in der Schule oft an Zeit und an anderen Ressourcen wie z.B. Finanzielle Unterstützung, ausgebildete LehrerInnen etc.
The DESI-Lensing Mock Challenge: large-scale cosmological analysis of 3x2-pt statistics
Creators: name: Blake, C.
name: Garcia-Quintero, C.
name: Ahlen, S.
name: Bianchi, D.
name: Brooks, D.
name: Claybaugh, T.
name: de la Macorra, A.
name: DeRose, J.
name: Dey, A.
name: Doel, P.
name: Emas, N.
name: Ferraro, S.
name: Forero-Romero, J. E.
name: Gutierrez, G.
name: Heydenreich, S.
name: Honscheid, K.
name: Howlett, C.
name: Ishak, M.
name: Joudaki, S.
name: Jullo, E.
name: Kehoe, R.
name: Kirkby, D.
name: Kremin, A.
name: Krolewski, A.
name: Landriau, M.
name: Lange, J. U.
name: Leauthaud, A.
name: Levi, M. E.
name: Manera, M.
name: Miquel, R.
name: Moustakas, J.
name: Niz, G.
name: Percival, W. J.
name: Pérez-Ràfols, I.
name: Porredon, A.
name: Rossi, G.
name: Ruggeri, R.
name: Sanchez, E.
name: Saulder, C.
name: Schlegel, D.
name: Sprayberry, D.
name: Sun, Z.
name: Tarlé, G.
name: Weaver, B. A.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: The current generation of large galaxy surveys will test the cosmological model by combining multiple types of observational probes. Realising the statistical promise of these new datasets requires rigorous attention to all aspects of analysis including cosmological measurements, modelling, covariance and parameter likelihood. In this paper we present the results of an end-to-end simulation study designed to test the analysis pipeline for the combination of the Dark Energy Spectroscopic Instrument (DESI) Year 1 galaxy redshift dataset and separate weak gravitational lensing information from the Kilo-Degree Survey, Dark Energy Survey and Hyper-Suprime-Cam Survey. Our analysis employs the 3x2-pt correlation functions including cosmic shear and galaxy-galaxy lensing, together with the projected correlation function of the spectroscopic DESI lenses. We build realistic simulations of these datasets including galaxy halo occupation distributions, photometric redshift errors, weights, multiplicative shear calibration biases and magnification. We calculate the analytical covariance of these correlation functions including the Gaussian, noise and super-sample contributions, and show that our covariance determination agrees with estimates based on the ensemble of simulations. We use a Bayesian inference platform to demonstrate that we can recover the fiducial cosmological parameters of the simulation within the statistical error margin of the experiment, investigating the sensitivity to scale cuts. This study is the first in a sequence of papers in which we present and validate the large-scale 3x2-pt cosmological analysis of DESI-Y1.
description: 29 pages, 17 figures, accepted for publication in The Open Journal of Astrophysics
Systematic reviews in neonatal pneumonia: a methods case study of text-mining.
Creators: name: Godinho, Myron Anthony
name: Murthy, Shruti
name: Lakiang, Theophilus
name: N. Sreekumaran Nair
Publisher: name: F1000Research
Year: 2017

description: Systematic reviews enable researchers to identify, analyze and synthesize relevant research into a single body of evidence, while presenting their methods and findings in a transparent and explicit manner. The process of identifying relevant studies requires reviewers to screen thousands of database search results, looking for appropriate studies to include. However, this presents a considerable human burden, requires an inordinate amount of time, and may increase reviewer fatigue and consequently, error. While computational techniques offer some solutions, not all reviewers in the health professions will have the technical ability to execute these, especially in low-resource settings which are often beset by issues of capacity, manpower and funding. However, text-mining is a method which is simple enough to be deployed by any systematic reviewer on any electronic screening platform, and so we decided to develop and use this technique for our reviews. As a funded research team working in the area of neonatal pneumonia, we would like to present a case study of our approach to text-mining techniques. As neonatal health and pneumonia are both priority research areas, we hope that our approach will be a useful guide for researchers working in these key areas. We also present the specific search terms, keywords and algorithms we used, and encourage their development by other researchers too.
Nasal carriage of methicillin-resistant Staphylococcus aureus (MRSA) among hospitalized patients: a cross-sectional study
Creators: name: Yong, Adrian
name: Kun, Gan Kim
name: Godinho, Myron Anthony
name: Dhillon, Arjan
name: Shobana Raj
Publisher: name: F1000Research
Year: 2017

description: Methicillin resistant Staphylococcus aureus (MRSA) infection is an important cause of increased morbidity and mortality among hospitalized patients. Major issues with multidrug resistant hospital associated (HA) strains are the treatment failures. The community associated MRSA (CA-MRSA) are discerned for the production of Panton valentine leucocidine (PVL) which makes them more virulent and capable of causing necrotizing pneumonia and necrotizing fasciitis. Nasal carriers of MRSA are thought to be the prime sources of infection in health care settings. This study was designed to estimate the burden of MRSA nasal colonization among hospital inpatients and also to type them based on antibiogram, PVL production and SCC mec type. After obtaining the clearance from institutional ethics committee, nasal swabs were collected and processed from 71 inpatients of a teaching hospital at Udupi taluk of Karnataka state, India. Suspected colonies of Staphylococcus aureus grown in blood agar were confirmed by coagulase test and latex agglutination test. MRSA were identified by cefoxitin disc diffusion test as per CLSI guidelines. All MRSA were subjected to multiplex PCR for SCC mec typing and single locus PCR for PVL assay. MRSA colonization was found in 15.5% of study subjects and none of the strains were producing PVL. Five isolates were identified as HA-MRSA which included four SCC mec type I and one type II. One SCC mec IV CA-MRSA was also identified. All the rest were non-typeable by the oligoprimers used in the study. Since majority of the MRSA were likely to be of HA-MRSA type, it is assumed that the patients would have been colonized with them after hospitalization. This demands the necessity of screening the health care workers for identifying the carriers of MRSA which aids in planning strategies to control their outbreaks in health care settings.
Completeness of reporting in Indian qualitative public health research: a systematic review of 20 years of literature
Creators: name: Godinho, Myron Anthony
name: Nachiket Gudi
name: Milkowska, Maja
name: Murthy, Shruti
name: Bailey, Ajay
name: N. Sreekumaran Nair
Publisher: name: F1000Research
Year: 2017

description: Objective
To systematically review the completeness of reporting in published, qualitative public health research (QPHR) studies in India.

Design
An electronic search was conducted in PubMed, Ovid MEDLINE, Web of Science, SCOPUS, and GoPubMed to identify English language primary QPHR studies from India, published between January 1, 1997, and June 30, 2016. Study selection was based on title, abstract, and full-text reviews. To assess included articles, the following modifications were made to the Consolidated Criteria for Reporting Qualitative Research (COREQ) checklist: item 9 was subdivided into 3 subcategories (study design, methodological orientation, data collection method); item 33 was added (study limitations); and all original items were retained. All included articles were independently assessed for compliance with the COREQ checklist by 2 groups of 2 reviewers and each item was noted as either reported or unreported. The summary included the number of COREQ items reported by each study and the number of studies that reported each COREQ item. Descriptive statistics for each year and for pre- and post-COREQ time periods were reported.

Results
Following assessment of 893 citations, 246 articles were included. Trends demonstrated an increasing number of Indian QPHR studies being published annually, and an increasing maximum number of COREQ items reported over the last 20 years (Figure). However, there was no increase in the minimum number of reported COREQ items over this period. Only 2 COREQ items (study design, and data collection method) were reported in all 246 studies. More than half of the studies reported 16 to 21 items of the overall 37 items. The least reported items (reported in <10% of studies) were mention of repeat interviews (1.6%), specification of reasons for non-participation (2.8%), review of interview transcripts by participants (4.5%), description of coding tree (6.1%), relationship establishment prior to study commencement (8.1%), and participant checking (8.9%). Despite a net percentage increase in reporting in all 3 domains after the introduction of COREQ (in 2007), domain 1 (research team and reflexivity) was least-frequently reported, with the least percentage improvement.

Conclusions
Most studies reported approximately half of the recommended items. Despite improving trends, the reporting of QPHR in India is far from complete. The interviewers, context, and analysis can all affect study conclusions, and hence should be reported. Authors, journal editors, and other involved individuals should collaborate to ensure adherence to established reporting guidelines, with attention focused on the least-frequently reported areas.
title: Anreizsysteme für das Wissensmanagement
Creators: name: Nagel, Daniela
Year: 2010

description: Zu Beginn der Arbeit wird die Wichtigkeit von Anreizsystemen für das Wissensmanagement dargestellt. Im zweiten Kapitel befinden sich die erforderlichen Grundlagen zum Bereich Wissensmanagement. Dieses Kapitel wird bewusst etwas kürzer gehalten, da das Hauptaugenmerk dieser Arbeit nicht speziell auf dem Wissensmanagement, sondern auf den dafür notwendigen Anreizsystemen liegt. Im dritten Kapitel werden nach einer Definition von Anreizsystemen die verschiedenen Arten von Anreizen erläutert. Im Anschluss daran werden Anreizsysteme mit ökonomischem und verhaltenswissenschaftlichem Zusammenhang diskutiert. Zum ersteren wird speziell auf die Principal-Agent-Theorie eingegangen, welche für Anreizsysteme für das Wissensmanagement herausstellt, dass sich diese nicht nur auf Ergebnisse, sondern auch speziell auf das Verhalten der Organisationsmitglieder konzentrieren sollen. Der Grund dafür liegt darin, dass die Bewertung und Messung der Ergebnisse des Geleisteten der Organisationsmitglieder beim Wissensmanagement in der Regel schwierig sind. Die verhaltenswissenschaftlichen Ansätze kommen zu dem Schluss, dass sowohl volitionale als auch motivationale Aspekte bei der Gestaltung solcher Anreizsysteme in Betracht genommen werden müssen. Das vierte Kapitel beschäftigt sich mit der Gestaltung von Anreizsystemen für das Wissensmanagement. Zunächst werden die nötigen Anforderungen (allgemeine und spezielle) an Anreizsysteme beschrieben. Weiters wird näher auf die Gestaltungsbereiche von Anreizsystemen eingegangen. Im Anschluss wird die Vorgehensweise bei der Implementierung von Anreizsystemen beschrieben. Hier werden vier Phasen genauer behandelt: die Situationsanalyse, die Konzeptentwicklung und –ausarbeitung, die Einführung und die Systemüberprüfung. Zum Schluss werden alle Bereiche der Gestaltung von Anreizsystemen für das Wissensmanagement für einen besseren Überblick in Grafiken zusammengeführt.
Colección de canciones: Digital Edition
Creators: name: Jacsont Pauline
Publisher: name: Zenodo
Year: 2024
Subjects: Spanish literature
Digital Edition
XML-TEI

description: Digital edition of a Spanish pliego de cordel (19th c.). It contains the XML-TEI file of the edition, as well as the files that led to this edition, i.e. the digital facsimiles (raw and retouched), and the transcription produced by the OCR tool eScriptorium (ALTO-XML). This digital edition is a part of the research project Desenrollando el cordel / Untangling the cordel / Démêler le cordel (2020-2024), led by professor Constance Carta at the University of Geneva and supported by the philanthropic Sandoz-Monique de Meuron Family Foundation.
Additional file 1 of Why publish? An interview study exploring patient innovators’ reasons for and experiences of scientific publishing
Creators: name: Dahlberg, Marie
name: Luckhaus, Jamie Linnea
name: Hasson, Henna
name: Jansson, Hanna
name: Lek, Madelen
name: Savage, Carl
name: Riggare, Sara
name: Wannheden, Carolina
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Developmental Biology
Cancer
Science Policy
Mental Health

description: Supplementary Material 1.
Neocythere Mertens 1956
Creators: name: Antonietto, Lucas Silveira
name: Carmo, Dermeval Aparecido do
name: Viviers, Marta Claudia
name: Neto, João Villar Queiroz
name: Hunt, Gene
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Ostracoda
Podocopida
Progonocytheridae
Neocythere

description: Neocythere? aff. pseudovanveeni Gründel, 1966
Fig. 8 A–B
? Neocythere pseudovanveeni Gründel, 1966: 33, figs 6.1–6.2.
Neocythere (n. subgen.?) pseudovanveeni –? Gründel 1967: 638, figs 2.14–2.15.
Neocythere GA B 21 – Grosdidier 1979: 8, fig. 38a–c.
Perissocytheridea? sp. 1 – Piovesan et al. 2013: 240, fig. 5.4a–b.
New material examined
BRAZIL: 1-CPB-1 well, Carmópolis Municipality, Sergipe State (depth of 222 m); Massapê outcrop, Riachuelo Municipality, Sergipe State (samples MP-1514, MP-1515, MP-1517 to MP-1522, MP- 1534, MP-1538, MP-1541, MP-1543, and MP-1545 to MP-1547), approximate coordinates 10°06' S, 37°10' W.
Type locality and age
Camin 3/55 well, Germany; upper Albian.
Measurements
Homeotype (CP-705): right valve: length = 0.48 mm, height = 0.30 mm.
Homeotype (CP-706): left valve: length = 0.49 mm, height = 0.28 mm.
Remarks
The suprageneric diagnosis follows Gründel (1977) and Liebau (2005), while the specific diagnosis is based on Gründel (1966). Although the present species and Neocythere? pseudovanveeni Gründel, 1966 are similar in size and general layout, the style of ornamentation and lack of distinctive morphological traits, i.e., the dorsal marginal flange and the pair of ventral ribs, leave the attribution to the former uncertain. Specimens identified as Neocythere GA B 21 in Grosdidier (1979) and Perissocytheridea? sp. 1 in Piovesan et al. (2013) also belong to Neocythere? aff. pseudovanveeni.
Paleoecology and distribution
Neocythere? aff. pseudovanveeni is a marine, shelf species occurring in the following localities and stages: Germany, upper Albian–lower Cenomanian (Gründel 1966, 1967); Madiéla Formation, Gabon Basin, Gabon, upper Albian–Cenomanian (Grosdidier 1979); Guarujá Formation, Santos Basin, lowermiddle Albian (Piovesan et al. 2013); and in the present work, Maruim Member, Riachuelo Formation, Sergipe-Alagoas Basin, uppermost Albian, Aracajuia antiqua zone (MSA-1), Brazil.
description: Published as part of Antonietto, Lucas Silveira, Carmo, Dermeval Aparecido do, Viviers, Marta Claudia, Neto, João Villar Queiroz & Hunt, Gene, 2016, Ostracoda (Arthropoda, Crustacea) from the Riachuelo Formation, Sergipe-Alagoas Basin, Brazil, Upper Aptian-Albian, pp. 1-57 in European Journal of Taxonomy 244 on pages 32-33, DOI: 10.5852/ejt.2016.244, http://zenodo.org/record/3850626
Additional file 2 of Why publish? An interview study exploring patient innovators’ reasons for and experiences of scientific publishing
Creators: name: Dahlberg, Marie
name: Luckhaus, Jamie Linnea
name: Hasson, Henna
name: Jansson, Hanna
name: Lek, Madelen
name: Savage, Carl
name: Riggare, Sara
name: Wannheden, Carolina
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Developmental Biology
Cancer
Science Policy
Mental Health

description: Supplementary Material 2.
Colección de canciones: Digital Edition
Creators: name: Jacsont Pauline
Publisher: name: Zenodo
Year: 2022
Subjects: Spanish literature
Digital Edition
XML-TEI

description: Digital edition of a Spanish pliego de cordel (19th c.). It contains the XML-TEI file of the edition, as well as the files that led to this edition, i.e. the digital facsimiles (raw and retouched), and the transcription produced by the OCR tool eScriptorium (ALTO-XML). This digital edition is a part of the research project Desenrollando el cordel / Untangling the cordel / Démêler le cordel (2020-2024), led by the professor Constance Carta at the University of Geneva and supported by the philanthropic Sandoz-Monique de Meuron Family Foundation.
Neocythere (Physocythere) tenuis Kaye 1965
Creators: name: Antonietto, Lucas Silveira
name: Carmo, Dermeval Aparecido do
name: Viviers, Marta Claudia
name: Neto, João Villar Queiroz
name: Hunt, Gene
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Ostracoda
Podocopida
Progonocytheridae
Neocythere
Neocythere tenuis

description: Neocythere (Physocythere) tenuis Kaye, 1965
Fig. 8 C–D
Neocythere (Physocythere) tenuis Kaye, 1965: 245, figs 6.14–6.17.
Neocythere (Physocythere) tenuis – Neale 1978: 352, fig. 10.10.
Neocythere sp. GA B 21 – Viviers et al. 2000: 427, figs 15.20–15.22.
New material examined
BRAZIL: Estre outcrop, Rosário do Catete Municipality, Sergipe State (samples MP-1423, MP-1426 and MP-1429), approximate coordinates 10°41' S, 37°02' W.
Type locality and stratum
Henfield, Sussex, England; lower Gault Formation, Hoplites dentatus zone, Anahoplites intermedius subzone, middle Albian.
Measurements
Homeotype (CP-707): right valve: length = 0.43 mm, height = 0.25 mm.
Homeotype (CP-708): left valve: length = 0.44 mm, height = 0.24 mm.
Remarks
The specific diagnosis follows Kaye (1965). Neocythere (Physocythere) tenuis Kaye, 1965 is the same species identified by Viviers et al. (2000) as Neocythere sp. GA B 21 from Grosdidier (1979). However, the species in the latter work is, actually, Neocythere? aff. pseudovanveeni (Gründel 1966).
Paleoecology and distribution
Neocythere (Physocythere) tenuis is a marine, shelf species occurring in the following localities and stages: England, middle Albian (Kaye 1965; Neale 1978);Açu Formation, Potiguar Basin, upper Albianlower Cenomanian; Maruim Member (Viviers et al. 2000); and in the present work, Taquari Member, Riachuelo Formation, Sergipe-Alagoas Basin, middle Albian, Aracajuia benderi zone (MSA-0), Praebythoceratina amsittenensis subzone (MSA-0.3), Brazil.
description: Published as part of Antonietto, Lucas Silveira, Carmo, Dermeval Aparecido do, Viviers, Marta Claudia, Neto, João Villar Queiroz & Hunt, Gene, 2016, Ostracoda (Arthropoda, Crustacea) from the Riachuelo Formation, Sergipe-Alagoas Basin, Brazil, Upper Aptian-Albian, pp. 1-57 in European Journal of Taxonomy 244 on pages 33-34, DOI: 10.5852/ejt.2016.244, http://zenodo.org/record/3850626
Additional file 1 of Cognitive performance trends among European older adults: exploring variations across cohorts, gender, and educational levels (2007–2017)
Creators: name: Rehnberg, Johan
name: Fors, Stefan
name: Ford, Katherine J.
name: Leist, Anja K.
Publisher: name: figshare
Year: 2024
Subjects: subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Mental Health

description: Supplementary Material 1
Additional file 1 of Comparative study on the predictive value of TG/HDL-C, TyG and TyG-BMI indices for 5-year mortality in critically ill patients with chronic heart failure: a retrospective study
Creators: name: Zhou, Zijing
name: Liu, Qiang
name: Zheng, Min
name: Zuo, Zhihong
name: Zhang, Guogang
name: Shi, Ruizheng
name: Wu, Ting
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified

description: Supplementary Material 1.
title: "Was noch niemals war: kein Ende"
Creators: name: Niedermayr, Andreas Karl
Year: 2010

description: „GEHEN BEI GRÜNEM LICHT WEITERGEHEN / DENK DARAN SOLANGE ES ZEIT IST / DU KANNST ES NICHT MIT DIR NEHMEN / WEITERGEHEN SCHNELLER SCHLAFEN / SCHNELLER TRÄUMEN […].“ Diese von gestaltlosen Stimmen „ohne Timbre, ohne Betonung, klar und gleichmäßig“ vorgetragenen Wortfloskeln aus der Werbe- und Mediensprache machen in Ingeborg Bachmanns Hörspiel Der gute Gott von Manhattan unmissverständlich klar, welche Art von Zeitsignatur den alles bestimmenden Ton in der Gesellschaft angibt: Es ist das Diktat eines weitverzweigten Macht- und Ordnungssystems, welches das menschliche Zeit- und Selbsterleben in einer bisher nie da gewesenen Beschleunigungseuphorie fundamental beschneidet und einengt. Die Verwirklichung individueller Sehnsüchte erfährt in dieser ausschließlich zweck- und gewinnorientierten Gesellschaftsform eine ebenso klare Absage wie auch der Wunsch nach den „sinnerfüllten Augenblicken“ weitgehend von den omnipräsenten Verheißungen einer kapitalistischen Konsumindustrie kanalisiert wird. Indem die beiden Liebenden (Jan und Jennifer) die vom Guten Gott als ewig und natürlich angesehene Zeitordnung negieren, vollziehen sie einen „Grenzübertritt“ in einen „anderen Zustand“, um alle entfremdenden Zwänge und Einengungen im gesellschaftlichen Alltag abzustreifen. Ob mit dem Ausbruch der „Gegenzeit“, der Loslösung von den Bedingungen der Wirklichkeit, auch wirklich dauerhaft ein tragfähiges Fundament für eine neue, ganzheitliche Existenzweise geschaffen werden kann, das die Grenzen einer repressiven Zeit- und Gesellschaftsordnung zu transzendieren imstande ist, soll in der vorliegenden Arbeit differenziert beleuchtet und kritisch hinterfragt werden.
On the New Factorizations of Yang-Mills Amplitudes
Creators: name: Zhang, Yong
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In this work, we prove the new factorization pattern for tree-level Yang-Mills (YM) amplitudes proposed in a companion paper. This pattern reveals a decomposition of amplitudes into a sum of gluings of lower-point amplitudes under specific kinematic constraints, making the hidden zeros of YM amplitudes manifest. Utilizing the Cachazo-He-Yuan (CHY) formalism, we rigorously derive these factorizations by systematically analyzing the contributions of singular solutions to the scattering equations. Through the identification and application of key algebraic identities, we demonstrate how cancellations among terms uncover a recursive structure intricately tied to the hidden zeros. This work not only conclusively validates the proposed factorization but also provides new insights into the geometric and algebraic organization of YM amplitudes within the CHY framework.
description: 34+17 pages, journal version, references updated, no significant changes
Additional file 3 of Why publish? An interview study exploring patient innovators’ reasons for and experiences of scientific publishing
Creators: name: Dahlberg, Marie
name: Luckhaus, Jamie Linnea
name: Hasson, Henna
name: Jansson, Hanna
name: Lek, Madelen
name: Savage, Carl
name: Riggare, Sara
name: Wannheden, Carolina
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Developmental Biology
Cancer
Science Policy
Mental Health

description: Supplementary Material 3.
To Rely or Not to Rely? Evaluating Interventions for Appropriate Reliance on Large Language Models
Creators: name: Bo, Jessica Y.
name: Wan, Sophia
name: Anderson, Ashton
Publisher: name: arXiv
Year: 2024
Subjects: subject: Human-Computer Interaction (cs.HC)
subject: FOS: Computer and information sciences

description: As Large Language Models become integral to decision-making, optimism about their power is tempered with concern over their errors. Users may over-rely on LLM advice that is confidently stated but wrong, or under-rely due to mistrust. Reliance interventions have been developed to help users of LLMs, but they lack rigorous evaluation for appropriate reliance. We benchmark the performance of three relevant interventions by conducting a randomized online experiment with 400 participants attempting two challenging tasks: LSAT logical reasoning and image-based numerical estimation. For each question, participants first answered independently, then received LLM advice modified by one of three reliance interventions and answered the question again. Our findings indicate that while interventions reduce over-reliance, they generally fail to improve appropriate reliance. Furthermore, people became more confident after making wrong reliance decisions in certain contexts, demonstrating poor calibration. Based on our findings, we discuss implications for designing effective reliance interventions in human-LLM collaboration.
Aracajuia antiqua Antonietto & Carmo & Viviers & Neto & Hunt 2016, comb. nov.
Creators: name: Antonietto, Lucas Silveira
name: Carmo, Dermeval Aparecido do
name: Viviers, Marta Claudia
name: Neto, João Villar Queiroz
name: Hunt, Gene
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Ostracoda
Podocopida
Krithidae
Aracajuia
Aracajuia antiqua

description: Aracajuia antiqua (Rosenfeld & Raab, 1983) comb. nov.
Fig. 8 G–I
Amphicytherura antiqua Rosenfeld & Raab, 1983: 96, figs 2.1–2.2.
New material examined
BRAZIL: 1-US-1 well, Laranjeiras Municipality, Sergipe State (depths of 480, 510, 555 and 1140 m); Massapê outcrop, Riachuelo Municipality, Sergipe State (samples MP-1515 to MP-1522, MP-1530, MP-1534, MP-1538, MP-1540 to MP-1543, MP-1546 and MP-1547), approximate coordinates 10°06' S, 37°10' W.
Type locality and stratum
Kokhav-3 well, at a depth of 1454 m, Israel; Telamim Formation, Levantine Basin, Aptian.
Measurements
Homeotype (CP-709): ♀, left valve: length = 0.51 mm, height = 0.32 mm.
Homeotype (CP-710): ³, carapace: length = 0.50 mm, height = 0.26 mm, width = 0.24 mm.
Remarks
The diagnosis follows Antonietto et al. (2013) for the generic and Rosenfeld & Raab (1983) for the specific level.
Paleoecology and distribution
Aracajuia antiqua (Rosenfeld & Raab, 1983) comb. nov. is a marine, shelf species occurring in the following localities and stages: Telamim and Talme Yafe Formations, Levantine Basin, Israel, Aptian– Albian (Rosenfeld & Raab 1983); and in the present work, Maruim Member, Riachuelo Formation, Sergipe-Alagoas Basin, Brazil, uppermost Albian, Aracajuia antiqua zone (MSA-1).
description: Published as part of Antonietto, Lucas Silveira, Carmo, Dermeval Aparecido do, Viviers, Marta Claudia, Neto, João Villar Queiroz & Hunt, Gene, 2016, Ostracoda (Arthropoda, Crustacea) from the Riachuelo Formation, Sergipe-Alagoas Basin, Brazil, Upper Aptian-Albian, pp. 1-57 in European Journal of Taxonomy 244 on pages 34-36, DOI: 10.5852/ejt.2016.244, http://zenodo.org/record/3850626
Additional file 4 of Why publish? An interview study exploring patient innovators’ reasons for and experiences of scientific publishing
Creators: name: Dahlberg, Marie
name: Luckhaus, Jamie Linnea
name: Hasson, Henna
name: Jansson, Hanna
name: Lek, Madelen
name: Savage, Carl
name: Riggare, Sara
name: Wannheden, Carolina
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Developmental Biology
Cancer
Science Policy
Mental Health

description: Supplementary Material 4.