cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1 of Autoantibodies to aberrantly glycosylated MUC1 in early stage breast cancer are associated with a better prognosis
Creators: name: Blixt, Ola
name: Bueti, Deanna
name: Burford, Brian
name: Allen, Diane
name: Julien, Sylvain
name: Hollingsworth, Michael
name: Gammerman, Alex
name: Fentiman, Ian
name: Taylor-Papadimitriou, Joyce
name: Burchell, Joy M
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Plant Biology

description: Additional file 1: Supplementary Table 1. Description of MUC1 glycoforms printed onto the slides. Table describing the glycopeptides printed onto the microarrays used to screen the large cohorts. (PDF 52 KB)
Plectris evansi Smith, 2008, new replacement name
Creators: name: Smith, Andrew B. T.
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Melolonthidae
Plectris
Plectris evansi

description: Plectris evansi new replacement name
 Plectris evansi is a replacement name for Plectris cinerascens Moser, 1918: 161 (a junior secondary homonym of Plectris cinerascens [Blanchard, 1850: 121]). This name is in honor of Art Evans, who has spearheaded the charge to catalog New World melolonthines.
description: Published as part of Smith, Andrew B. T., 2008, South American Melolonthinae (Coleoptera: Scarabaeidae) classification and nomenclature: some problems and solutions, pp. 1-28 in Insecta Mundi 2008 (60) on page 23, DOI: 10.5281/zenodo.5170193
Simulating Binary Neutron Stars with Hybrid Equation of States: Gravitational Waves, Electromagnetic Signatures, and Challenges for Numerical Relativity
Creators: name: Gieg, Henrique
name: Dietrich, Tim
name: Ujevic, Maximiliano
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The gravitational wave and electromagnetic signatures connected to the merger of two neutron stars allow us to test the nature of matter at supranuclear densities. Since the Equation of State governing the interior of neutron stars is only loosely constrained, there is even the possibility that strange quark matter exists inside the core of neutron stars. We investigate how strange quark matter cores affect the binary neutron star coalescence by performing numerical relativity simulations. Interestingly, the strong phase transition can cause a reduction of the convergence order of the numerical schemes to first order if the numerical resolution is not high enough. Therefore, an additional challenge is added in producing high-quality gravitational wave templates for Equation of States with a strong phase transition. Focusing on one particular configuration of an equal mass configuration consistent with GW170817, we compute and discuss the associated gravitational wave signal and some of the electromagnetic counterparts connected to the merger of the two stars. We find that existing waveform approximants employed for the analysis of GW170817 allow describing this kind of systems within the numerical uncertainties, which, however, are several times larger than for pure hadronic Equation of States, which means that even higher resolutions have been employed for an accurate gravitational wave model comparison. We also show that for the chosen Equation of State, quasi-universal relations describing the gravitational wave emission after the moment of merger seem to hold and that the electromagnetic signatures connected to our chosen setup would not be bright enough to explain the kilonova associated to GW170817.
Is evidence for enhanced mass transfer during dwarf-nova outbursts well substantiated?
Creators: name: Osaki, Yoji
name: Meyer, Friedrich
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Outburst mechanisms of SU UMa-type dwarf novae are discussed. Two competing models were proposed; a pure disk instability model called the thermal-tidal instability model (TTI model) and the enhanced mass transfer model (EMT model). Observational evidence for enhanced mass transfer from the secondary star during outbursts is critically examined. It is demonstrated that most evidence for enhanced mass transfer is not well substantiated. Patterson et al. (2002) have recently claimed to have found evidence for enhanced mass transfer during the 2001 outburst of WZ Sge. We show that their evidence is probably due to a misinterpretation of their observed light curves. Our theoretical analysis also shows that irradiation during outburst should not affect the mass transfer rate. A refinement of the TTI model is proposed that can explain why superhumps appear a few days after the superoutburst maximum in some SU UMa stars. We present our own interpretation of the overall development of the 2001 outburst of WZ Sge based on the TTI model that does not require the assumption of an unproved enhanced mass transfer.
description: 14 pages, accepted for publication in A&A
Reply to a comment on `Understanding the gamma-ray emission from the globular cluster 47 Tuc: evidence for dark matter?'
Creators: name: Brown, Anthony M.
name: Lacroix, Thomas
name: Lloyd, Sheridan
name: Boehm, Celine
name: Chadwick, Paula
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Analysing 9 years of Fermi-LAT observations, we recently studied the spectral properties of the prominent globular cluster 47 Tuc (Brown et al. 2018). In particular, we investigated several models to explain the observed gamma-ray emission, ranging from millisecond pulsars (MSP) to Dark Matter (DM), with the motivation for the latter model driven by recent evidence that 47 Tuc harbours an intermediate-mass black hole (IMBH). This investigation found evidence that the observed gamma-ray emission from 47 Tuc is due to two source populations of MSPs and DM. In Bartels \& Edwards (2018), the authors comment that this evidence is an artifact of the MSP spectra used in (Brown et al. 2019). Here we reply to this comment and argue that the authors of Bartels \& Edwards (2018) (i) do not give due consideration to a very important implication of their result and (ii) there is tension between our MSP fit and their MSP fit when taking uncertainties into consideration. As such, we still conclude there is evidence for a DM component which motivates a deeper radio study of the prominent globular cluster 47 Tuc.
description: 3 pages, accepted for publication in PRD
Meiotic chromosome analysis in tropical orchid genus Sobralia
Creators: name: Bolaños-Villegas, Pablo
name: Mora-Calderón, José
name: Albertazzi-Barahona, Stefano
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 60703 Plant Developmental and Reproductive Biology
subject: 60702 Plant Cell and Molecular Biology

description: Tropical orchid genus Sobralia comprises terrestrial plants with elongated, cane-like stems and large symmetrical, yet ephemeral flowers. This genus is distributed throughout Central and South America and may hold horticultural potential. Nonetheless, little is known about the reproductive viability of species that comprise this genus. In this project male meiocytes have been examined by light microscopy to determine chromosome numbers, frequency of chromosome segregation defects and the frequency of normal tetrads at the end of meiosis II. The species sampled belong to an ex situ collection managed by the Lankester Botanical Garden of the University of Costa Rica. The species were: S. amparoae, S. artropubescens, S. boucheri, S. bradeorum, S. carazoi, S. crispissima, S. danjanzenii, S. fenzliana, S. geminata, S. helleri and S. rosea. Our results indicate that meiocytes from these species have a variable diploid (2n) chromosome number of 24, 30 and 32, that segregation defects are rare and that tetrad formation rates exceed 80%, suggesting efficient meiotic progression and high pollen viability. Taken together our results suggest that at least in Costa Rica the populations sampled are reproductively healthy and amenable to horticultural breeding.
The TLA+ Toolbox
Creators: name: Kuppe, Markus Alexander
name: Lamport, Leslie
name: Ricketts, Daniel
Publisher: name: arXiv
Year: 2019
Subjects: subject: Software Engineering (cs.SE)
subject: Logic in Computer Science (cs.LO)
subject: FOS: Computer and information sciences

description: We discuss the workflows supported by the TLA+ Toolbox to write and verify specifications. We focus on features that are useful in industry because its users are primarily engineers. Two features are novel in the scope of formal IDEs: CloudTLC connects the Toolbox with cloud computing to scale up model checking. A Profiler helps to debug inefficient expressions and to pinpoint the source of state space explosion. For those who wish to contribute to the Toolbox or learn from its flaws, we present its technical architecture.
description: In Proceedings F-IDE 2019, arXiv:1912.09611
Modelling depletion by re-accretion of gas from a dusty disc in post-AGB stars
Creators: name: Oomen, Glenn-Michael
name: Van Winckel, Hans
name: Pols, Onno
name: Nelemans, Gijs
Publisher: name: arXiv
Year: 2019
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Many disc-type post-asymptotic giant branch (post-AGB) stars are chemically peculiar, showing underabundances of refractory elements in their photospheres that correlate with condensation temperature. The aim of this paper is to investigate how accretion from a circumbinary disc can cause this phenomenon of depletion and how this impacts the evolution of post-AGB stars. We used the \texttt{MESA} code to evolve stars in the post-AGB phase, while including accretion of metal-poor gas. We compared the models to a sample of 58 observed disc-type post-AGB stars with chemical abundance data. For each of these stars, we estimated the luminosity and the mass using the Gaia distance. We modelled the accretion rate onto the binary from a viscously evolving disc for a range of initial accretion rates and disc masses. We find that large initial accretion rates ($\gtrsim 3\times10^{-7}$ $M_\odot$/yr) and large initial disc masses ($\sim10^{-2}$ $M_\odot$) are needed to reproduce the observed depleted post-AGB stars. Based on these high accretion rates, the evolution timescale of post-AGB stars can be significantly extended by a factor between two and five. We distinguish depletion patterns that are unsaturated (plateau profile) from those that are saturated, and we expect that post-red giant branch (post-RGB) stars are much more likely to show an unsaturated abundance pattern compared to post-AGB stars. Finally, because of the slower evolution of the low-mass post-RGB stars, we find that these systems can become depleted at lower effective temperatures ($< 5000$ K). We conclude that accretion from a circumbinary disc successfully accounts for the chemical peculiarity of post-AGB stars.
description: 20 pages, 16 figures, accepted for publication in Astronomy and Astrophysics
Propagation of Zamia skinneri Warszewicz, an endangered ornamental plant from the tropics
Creators: name: Bolaños-Villegas, Pablo
Publisher: name: figshare
Year: 2019
Subjects: subject: 70602 Horticultural Crop Improvement (Selection and Breeding)
subject: FOS: Agriculture, forestry and fisheries

description: Propagation of Zamia skinneri Warszewicz, anendangered ornamental plant from the tropics. Thiswork is a review of publications about the propagation ofZamia skinneri, an endangered cycad of greatornamental value. Both field and laboratorymethodologies are discussed as a way to pinpoint whatareas can still be developed in order to attain feasiblecommercial methods of mass propagation for this plant.
2-10 keV luminosity of high-mass binaries as a gauge of ongoing star-formation rate
Creators: name: Persic, M.
name: Rephaeli, Y.
name: Braito, V.
name: Cappi, M.
name: Della Ceca, R.
name: Franceschini, A.
name: Gruber, D. E.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Based on recent work on spectral decomposition of the emission of star-forming galaxies, we assess whether the integrated 2-10 keV emission from high-mass X-ray binaries (HMXBs), L_{2-10}^{HMXB}, can be used as a reliable estimator of ongoing star formation rate (SFR). Using a sample of 46 local (z < 0.1) star forming galaxies, and spectral modeling of ASCA, BeppoSAX, and XMM-Newton data, we demonstrate the existence of a linear SFR-L_{2-10}^{HMXB} relation which holds over ~5 decades in X-ray luminosity and SFR. The total 2-10 keV luminosity is not a precise SFR indicator because at low SFR (i.e., in normal and moderately-starbursting galaxies) it is substantially affected by the emission of low-mass X-ray binaries, which do not trace the current SFR due to their long evolution lifetimes, while at very high SFR (i.e., for very luminous FIR-selected galaxies) it is frequently affected by the presence of strongly obscured AGNs. The availability of purely SB-powered galaxies - whose 2-10 keV emission is mainly due to HMXBs - allows us to properly calibrate the SFR-L_{2-10}^{HMXB} relation. The SFR-L_{2-10}^{HMXB} relation holds also for distant (z ~ 1) galaxies in the Hubble Deep Field North sample, for which we lack spectral information, but whose SFR can be estimated from deep radio data. If confirmed by more detailed observations, it may be possible to use the deduced relation to identify distant galaxies that are X-ray overluminous for their (independently estimated) SFR, and are therefore likely to hide strongly absorbed AGNs.
description: Astronomy & Astrophysics, in press (15 pages, 7 figures, 4 tables)
Lamin microaggregates lead to altered mechanotransmission in progerin-expressing cells
Creators: name: Danielsson, Brooke E.
name: Tieu, Katie V.
name: Kranthidhar Bathula
name: Armiger, Travis J.
name: Pragna S. Vellala
name: Taylor, Rebecca E.
name: Dahl, Kris Noel
name: Conway, Daniel E.
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plasma Physics

description: The nuclear lamina is a meshwork of intermediate filament proteins, and lamin A is the primary mechanical protein. An altered splicing of lamin A, known as progerin, causes the disease Hutchinson-Gilford progeria syndrome. Progerin-expressing cells have altered nuclear shapes and stiffened nuclear lamina with microaggregates of progerin. Here, progerin microaggregate inclusions in the lamina are shown to lead to cellular and multicellular dysfunction. We show with Comsol simulations that stiffened inclusions causes redistribution of normally homogeneous forces, and this redistribution is dependent on the stiffness difference and relatively independent of inclusion size. We also show mechanotransmission changes associated with progerin expression in cells under confinement and cells under external forces. Endothelial cells expressing progerin do not align properly with patterning. Fibroblasts expressing progerin do not align properly to applied cyclic force. Combined, these studies show that altered nuclear lamina mechanics and microstructure impacts cytoskeletal force transmission through the cell.
Magnetic induction and domain walls in magnetic thin films at remanence
Creators: name: Radu, F.
name: Leiner, V.
name: Westerholt, K.
name: Zabel, H.
name: McCord, J.
name: Vorobiev, A.
name: Major, J.
name: Jullien, D.
name: Humblot, H.
name: Tasset, F.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Magnetic domain walls in thin films can be well analyzed using polarized neutron reflectometry. Well defined streaks in the off-specular spin-flip scattering maps are explained by neutron refraction at perpendicular Néel walls. The position of the streaks depends only on the magnetic induction within the domains, whereas the intensity of the off-specular magnetic scattering depends on the spin-flip probability at the domain walls and on the average size of the magnetic domains. This effect is fundamentally different and has to be clearly distinguished from diffuse scattering originating from the size distribution of magnetic domains. Polarized neutron reflectivity experiments were carried out using a $^3$He gas spin-filter with a analyzing power as high as 96% and a neutron transmission of approx 35%. Furthermore, the off-specular magnetic scattering was enhanced by using neutron resonance and neutron standing wave techniques.
description: 5 pages
Additional file 2 of Autoantibodies to aberrantly glycosylated MUC1 in early stage breast cancer are associated with a better prognosis
Creators: name: Blixt, Ola
name: Bueti, Deanna
name: Burford, Brian
name: Allen, Diane
name: Julien, Sylvain
name: Hollingsworth, Michael
name: Gammerman, Alex
name: Fentiman, Ian
name: Taylor-Papadimitriou, Joyce
name: Burchell, Joy M
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Plant Biology

description: Additional file 2: Supplementary Figure 1. Lectin and mAb binding to 48-well 20mer glycoform array. Staining of arrays with glycoform-specific lectins and antibodies for glycopeptide array quality control. (PDF 430 KB)
Additional file 2: of Combination of PCT, sNFI and dCHC for the diagnosis of ascites infection in cirrhotic patients
Creators: name: Wang, Han
name: Li, Yan
name: Zhang, Fangfang
name: Yang, Ning
name: Xie, Na
name: Mao, Yuanli
name: Li, Boan
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Table S5. The bioscore for ascitic fluid infection diagnosis. (DOC 36 kb)
title: Quadrigae iniectis ignorantiae catenis triumphales
Creators: name: Duising, Heinrich
name: Dexbach, Johann Helfrich
name: Bourdon, Samuel
Publisher: name: Philipps-Universität Marburg
Year: 2025
Subjects: Manuscripts & rare books
Handschriften, seltene Bücher
Festschrift

description: Elektronische Reproduktion von: Qvadrigæ Iniectis Ignorantiæ Catenis triumphales : Victorice hostium lauru coronatis, Et ad Doctorale S. Theologiæ ... admotis ; Gregorio Stannario, Philosophica professione veterano... et Henrico Duisingh, Sedulo Græcæ Linguæ Professore, ... Iuridica verò cidari revinctis, Johanne Helferico Derbach, ... antistite et Samuele Bourdon, Togatæ advocationum militiæ adscripto: VIII.ld. Novembr. anni Christiani 1660 ; Lanæum in capitolium invectæ. - Marbvrgi Cattorum : Ex Typotheca Salomonis Schadewitzii, Academiæm Typogr., [1660]. - [8] Seiten ; 4°. - 
Standort: Universität Marburg, Universitätsbibliothek. - 
Signatur: VIII B 331 db, 23. - 
Werktitel: Quadrigae iniectis ignorantiae catenis triumphales. - 
Anmerkung: Titel- und Schlussvignette. - 
Erscheinungsjahr nach der Datierung im Titel. - 
(Hassiaca)

Digitalisiert 2025
Multiplexed photon number measurement
Creators: name: Essig, Antoine
name: Ficheux, Quentin
name: Peronnin, Théau
name: Cottet, Nathanaël
name: Lescanne, Raphaël
name: Sarlette, Alain
name: Rouchon, Pierre
name: Leghtas, Zaki
name: Huard, Benjamin
Publisher: name: arXiv
Year: 2020
Subjects: subject: Quantum Physics (quant-ph)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: When a two-level system -- a qubit -- is used as a probe of a larger system, it naturally leads to answering a single yes-no question about the system state. Here we propose a method where a single qubit is able to extract, not a single, but many bits of information about the photon number of a microwave resonator using continuous measurement. We realize a proof-of-principle experiment by recording the fluorescence emitted by a superconducting qubit reflecting a frequency comb, thus implementing multiplexed photon counting where the information about each Fock state -- from 0 to 8 -- is simultaneously encoded in independent measurement channels. Direct Wigner tomography of the quantum state of the resonator evidences the back-action of the measurement as well as the optimal information extraction parameters. Our experiment unleashes the full potential of quantum meters by replacing a sequential quantum measurements with simultaneous and continuous measurements separated in the frequency domain.
description: This new version of the manuscript adds several results compared to the first versions
Additional file 3: of Combination of PCT, sNFI and dCHC for the diagnosis of ascites infection in cirrhotic patients
Creators: name: Wang, Han
name: Li, Yan
name: Zhang, Fangfang
name: Yang, Ning
name: Xie, Na
name: Mao, Yuanli
name: Li, Boan
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Medicine
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Table S1. Baseline demographic data and clinical variables of the enrolled patients. (DOC 55 kb)
Additional file 5: of Combination of PCT, sNFI and dCHC for the diagnosis of ascites infection in cirrhotic patients
Creators: name: Wang, Han
name: Li, Yan
name: Zhang, Fangfang
name: Yang, Ning
name: Xie, Na
name: Mao, Yuanli
name: Li, Boan
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Table S4. Multivariate associations of PCT, CRP, dCHC, sNFI and WBC with ascitic infection. (DOC 49 kb)
Optically bound microscopic particles in one dimension
Creators: name: McGloin, D.
name: Carruthers, A. E.
name: Dholakia, K.
name: Wright, E. M.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: Counter-propagating light fields have the ability to create self-organized one-dimensional optically bound arrays of microscopic particles, where the light fields adapt to the particle locations and vice versa. We develop a theoretical model to describe this situation and show good agreement with recent experimental data (Phys. Rev. Lett. 89, 128301 (2002)) for two and three particles, if the scattering force is assumed to dominate the axial trapping of the particles. The extension of these ideas to two and three dimensional optically bound states is also discussed.
description: 12 pages, incl. 5 figures, accepted by Phys. Rev. E
Clavipalpus Laporte
Creators: name: Smith, Andrew B. T.
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Melolonthidae
Clavipalpus

description: Genus Clavipalpus Laporte
 Clavipalpus Laporte, 1832: 406. Type species Clavipalpus dejeani Laporte, by monotypy.
 Synonym. Amphicrania Burmeister, 1855: 26. Type species Amphicrania ursina Burmeister, by subsequent designation (Evans 2003: 249).
description: Published as part of Smith, Andrew B. T., 2008, South American Melolonthinae (Coleoptera: Scarabaeidae) classification and nomenclature: some problems and solutions, pp. 1-28 in Insecta Mundi 2008 (60) on page 22, DOI: 10.5281/zenodo.5170193
Additional file 3 of Autoantibodies to aberrantly glycosylated MUC1 in early stage breast cancer are associated with a better prognosis
Creators: name: Blixt, Ola
name: Bueti, Deanna
name: Burford, Brian
name: Allen, Diane
name: Julien, Sylvain
name: Hollingsworth, Michael
name: Gammerman, Alex
name: Fentiman, Ian
name: Taylor-Papadimitriou, Joyce
name: Burchell, Joy M
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Plant Biology

description: Additional file 3: Supplementary Figure 2. Comparison of binding to 20mer MUC1 core3 and 60mer core3 of autoantibodies. Binding to MUC1 20mer (1TR) and MUC1 60mer (3TR) of individual sera. (PDF 29 KB)
Additional file 4 of Autoantibodies to aberrantly glycosylated MUC1 in early stage breast cancer are associated with a better prognosis
Creators: name: Blixt, Ola
name: Bueti, Deanna
name: Burford, Brian
name: Allen, Diane
name: Julien, Sylvain
name: Hollingsworth, Michael
name: Gammerman, Alex
name: Fentiman, Ian
name: Taylor-Papadimitriou, Joyce
name: Burchell, Joy M
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Plant Biology

description: Additional file 4: Supplementary Figure 3. Clinical characteristics of the 395 breast cancer patients who donated sera for the study. Time to metastasis of the breast cancer cohort related to clinical tumour size, lymph nodes positivity, age at diagnosis and tumour grade. (PDF 170 KB)
Fermion Masses and Mixing and CP-Violation in SO(10) Models with Family Symmetries
Creators: name: Chen, Mu-Chun
name: Mahanthappa, K. T.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Several ideas for solving the problem of fermion mass hierarchy and mixing and specific supersymmetric models that realize it are reviewed. In particular, we discuss many models based on SO(10) in four dimensions combined with a family symmetry to accommodate fermion mass hierarchy and mixing, including the case of neutrinos. These models are compared and various tests that can be used to distinguish these models are suggested. We also include a discussion of a few SO(10) models in higher space-time dimensions.
description: 66 pages; 5 figures; Submitted to International Journal of Modern Physics A; v2: a few references added; some changes in text
Simulation under Arbitrary Temporal Logic Constraints
Creators: name: Brunel, Julien
name: Chemouil, David
name: Cunha, Alcino
name: Macedo, Nuno
Publisher: name: arXiv
Year: 2019
Subjects: subject: Software Engineering (cs.SE)
subject: Logic in Computer Science (cs.LO)
subject: FOS: Computer and information sciences

description: Most model checkers provide a useful simulation mode, that allows users to explore the set of possible behaviours by interactively picking at each state which event to execute next. Traditionally this simulation mode cannot take into consideration additional temporal logic constraints, such as arbitrary fairness restrictions, substantially reducing its usability for debugging the modelled system behaviour. Similarly, when a specification is false, even if all its counter-examples combined also form a set of behaviours, most model checkers only present one of them to the user, providing little or no mechanism to explore alternatives. In this paper, we present a simple on-the-fly verification technique to allow the user to explore the behaviours that satisfy an arbitrary temporal logic specification, with an interactive process akin to simulation. This technique enables a unified interface for simulating the modelled system and exploring its counter-examples. The technique is formalised in the framework of state/event linear temporal logic and a proof of concept was implemented in an event-based variant of the Electrum framework.
description: In Proceedings F-IDE 2019, arXiv:1912.09611
Tracking solutions in tachyon cosmology
Creators: name: Aguirregabiria, J. M.
name: Lazkoz, Ruth
Publisher: name: arXiv
Year: 2004
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Astrophysics (astro-ph)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We perform a thorough phase-plane analysis of the flow defined by the equations of motion of a FRW universe filled with a tachyonic fluid plus a barotropic one. The tachyon potential is assumed to be of inverse square form, thus allowing for a two-dimensional autonomous system of equations. The Friedmann constraint, combined with a convenient choice of coordinates, renders the physical state compact. We find the fixed-point solutions, and discuss whether they represent attractors or not. The way the two fluids contribute at late-times to the fractional energy density depends on how fast the barotropic fluid redshifts. If it does it fast enough, the tachyonic fluid takes over at late times, but if the opposite happens, the situation will not be completely dominated by the barotropic fluid; instead there will be a residual non-negligible contribution from the tachyon subject to restrictions coming from nucleosynthesis.
description: 5 pages, 4 figures
Reorganization of the nuclear architecture in the Drosophila melanogaster Lamin B mutant lacking the CaaX box
Creators: name: Bondarenko, Semen M.
name: Sharakhov, Igor V.
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Hematology

description: Lamins interact with the nuclear membrane and chromatin but the precise players and mechanisms of these interactions are unknown. Here, we tested whether the removal of the CaaX motif from Lamin B disrupts its attachment to the nuclear membrane and affects chromatin distribution. We used Drosophila melanogaster LamA25 homozygous mutants that lack the CaaX box. We found that the mutant Lamin B was not confined to the nuclear periphery but was distributed throughout the nuclear interior, colocalizing with chromosomes in salivary gland and proventriculus. The peripheral position of Lamin C, nuclear pore complex (NPC), heterochromatin protein 1a (HP1a), H3K9me2- and H3K27me3-associated chromatin remained intact. The fluorescence intensity of the DAPI-stained peripheral chromatin significantly decreased and that of the central chromatin significantly increased in the proventriculus nuclei of the mutantflies compared to wild-type. However, the mutation had little effect on chromatin radial distribution inside highly polytenized salivary gland nuclei.
Radon Concentration Potential in Bibala Municipality Water: Consequences for Public Consumption
Creators: name: Kessongo, Joaquim
name: Bahu, Yoenls
name: Inacio, Margarida
name: Almeida, Pedro
name: Peralta, Luis
name: Soares, Sandra
Publisher: name: arXiv
Year: 2019
Subjects: subject: Medical Physics (physics.med-ph)
subject: FOS: Physical sciences

description: The primary motivation for this work is the evaluation of the radon concentration in portable water for human consumption in Bibala, a municipality in Angola, where granitic rocks are common, and contain a high concentration of uranium that can be mobilized in underground water. Radon is the largest contributor of radioactive pollution in underground water.Its concentration in water, represents a public health risk due to the fact that the gas can easily escape into the air, adding to the total indoor concentration of radon.On the other hand, ingestion of water with a high radon concentration represents an additional risk to the stomach. Measurements of radon concentration, in Bibala municipality's water, were performed on 16 samples obtained from wells of various depths and analyzed with DURRIDGEs' RAD7 equipment. Measured concentrations are in the range from 39.5 to 202 Bq/L , with 2 of the recovered samples presenting values over 100 Bq/L.
description: 11 pages, 7 figures, 7 tables, presented at 3rd International Conference on Dosimetry and its Applications (ICDA-3), 27-31 May, 2019, Lisbon
Bolanos et al 2017 Analysis_of_Phalaenopsis_Bud_Length_during_Meiosis JIC Taiwan.pdfAnalysis of Phalaenopsis Bud Length during Meiosisto Predict Pollen Fertility
Creators: name: Bolaños-Villegas, Pablo
Publisher: name: figshare
Year: 2019
Subjects: subject: 70105 Agricultural Systems Analysis and Modelling
subject: FOS: Other agricultural sciences
subject: 70602 Horticultural Crop Improvement (Selection and Breeding)
subject: FOS: Agriculture, forestry and fisheries
subject: 70601 Horticultural Crop Growth and Development

description: Phalaenopsis orchids are a very important commercial crop in tropical countries. Nonetheless hybrids feature variations in pollen fertility due to widespread chromosomalrearrangements in meiotic chromosomes. Usually each meiotic stage in pollen can be traced on the basis of the length of the flower bud at that stage. Therefore, it washypothesized that possibly flower bud growth rates could also be affected by defects in chromosome segregation. Then, comparisons of bud length could help in identifyingvarieties or lines with defects during meiosis. In this study, a possible analyzed relationship between the number of meiotic tetrads and changes in bud length was analyzed byusing a parametric response model. Results suggest that there is a strong relationship between both variables and that it is possible to estimate tetrad formation based on budlength. It was concluded that bud length at the tetrad stage could be used as an indicator of fertility.
On the structure of the burst and afterglow of Gamma-Ray Bursts I: the radial approximation
Creators: name: Ruffini, R.
name: Bianco, C. L.
name: Chardonnet, P.
name: Fraschetti, F.
name: Xue, S. -S.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We have proposed three paradigms for the theoretical interpretation of gamma-ray bursts (GRBs). (1) The relative space-time transformation (RSTT) paradigm emphasizes how the knowledge of the entire world-line of the source from the moment of gravitational collapse is a necessary condition to interpret GRB data. (2) The interpretation of the burst structure (IBS) paradigm differentiates in all GRBs between an injector phase and a beam-target phase. (3) The GRB-supernova time sequence (GSTS) paradigm introduces the concept of induced supernova explosion in the supernovae-GRB association. These three paradigms are illustrated using our theory based on the vacuum polarization process occurring around an electromagnetic black hole (EMBH theory) and using GRB 991216 as a prototype. We illustrate the five fundamental eras of the EMBH theory: the self acceleration of the $e^+e^-$ pair-electromagnetic plasma (PEM pulse), its interaction with the baryonic remnant of the progenitor star (PEMB pulse). We then study the approach of the PEMB pulse to transparency, the emission of the proper GRB (P-GRB) and its relation to the ``short GRBs''. Finally the three different regimes of the afterglow are described within the fully radiative and radial approximations. The best fit of the theory leads to an unequivocal identification of the ``long GRBs'' as extended emission occurring at the afterglow peak (E-APE). The relative intensities, the time separation and the hardness ratio of the P-GRB and the E-APE are used as distinctive observational test of the EMBH theory and the excellent agreement between our theoretical predictions and the observations are documented. The afterglow power-law indexes in the EMBH theory are compared and contrasted with the ones in the literature, and no beaming process is found for GRB 991216.
description: 96 pages, 40 figures, to appear on Int. Journ. Mod. Phys. D
Additional file 5 of Autoantibodies to aberrantly glycosylated MUC1 in early stage breast cancer are associated with a better prognosis
Creators: name: Blixt, Ola
name: Bueti, Deanna
name: Burford, Brian
name: Allen, Diane
name: Julien, Sylvain
name: Hollingsworth, Michael
name: Gammerman, Alex
name: Fentiman, Ian
name: Taylor-Papadimitriou, Joyce
name: Burchell, Joy M
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Plant Biology

description: Additional file 5: Supplementary Figure 4. Expression of B3GNT6 in breast cancers. qRT-PCR of B3GNT6 in 58 primary breast cancers. (PDF 86 KB)
Additional file 1: of Cardiovascular and inflammatory mechanisms in healthy humans exposed to air pollution in the vicinity of a steel mill
Creators: name: Kumarathasan, Premkumari
name: Vincent, Renaud
name: Blais, Erica
name: Bielecki, Agnieszka
name: Guénette, Josée
name: Filiatreault, Alain
name: Brion, Orly
name: Cakmak, Sabit
name: Thomson, Errol
name: Shutt, Robin
name: Kauri, Lisa
name: Mahmud, Mamun
name: Liu, Ling
name: Dales, Robert
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Figure S1. Canonical pathways identified by IPA analysis using Fisher’s exact test on protein marker changes. BM (Bayview “with” mask exposures) vs C (College site exposures) – Dark Blue; BA (Bayview ambient, “without” mask exposures) vs C (College site exposures) – Pale Blue. (DOCX 100 kb)
Searching for Planets in the Hyades V: Limits on Planet Detection in the Presence of Stellar Activity
Creators: name: Paulson, D. B.
name: Cochran, W. D.
name: Hatzes, A. P.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present the results of a radial velocity survey of a sample of Hyades stars, and discuss the effects of stellar activity on radial velocity measurements. The level of radial velocity scatter due to rotational modulation of stellar surface features for the Hyades is in agreement with the predictions of Saar & Donahue (1997)- the maximum radial velocity rms of up to ~50 m/s, with an average rms of ~16 m/s. In this sample of 94 stars, we find 1 new binary, 2 stars with linear trends indicative of binary companions, and no close-in giant planets. We discuss the limits on extrasolar planet detection in the Hyades and the constraints imposed on radial velocity surveys of young stars.
description: To appear in the June 2004 issue of AJ
Bolanos et al 2017 Analysis_of_Phalaenopsis_Bud_Length_during_Meiosis JIC Taiwan.pdf
Creators: name: Bolaños-Villegas, Pablo
Publisher: name: figshare
Year: 2019
Subjects: subject: 70105 Agricultural Systems Analysis and Modelling
subject: FOS: Other agricultural sciences
subject: 70602 Horticultural Crop Improvement (Selection and Breeding)
subject: FOS: Agriculture, forestry and fisheries
subject: 70601 Horticultural Crop Growth and Development

description: Phalaenopsis orchids are a very important commercial crop in tropical countries. Nonetheless hybrids feature variations in pollen fertility due to widespread chromosomalrearrangements in meiotic chromosomes. Usually each meiotic stage in pollen can be traced on the basis of the length of the flower bud at that stage. Therefore, it washypothesized that possibly flower bud growth rates could also be affected by defects in chromosome segregation. Then, comparisons of bud length could help in identifyingvarieties or lines with defects during meiosis. In this study, a possible analyzed relationship between the number of meiotic tetrads and changes in bud length was analyzed byusing a parametric response model. Results suggest that there is a strong relationship between both variables and that it is possible to estimate tetrad formation based on budlength. It was concluded that bud length at the tetrad stage could be used as an indicator of fertility.
Plectris katovichi Smith, 2008, new replacement name
Creators: name: Smith, Andrew B. T.
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Melolonthidae
Plectris
Plectris katovichi

description: Plectris katovichi new replacement name
 Plectris katovichi is a replacement name for Plectris bonariensis Frey, 1967: 92 (a junior secondary homonym of Plectris bonariensis [Bruch, 1909: 350]). This name is in honor of Kerry Katovich, who recently reviewed the Macrodactylini genera.
  Plectris tacoma new replacement name
 Plectris tacoma is a replacement name for Plectris comata (Blanchard, 1851; 140) (a junior secondary homonym of Plectris comata [Blanchard, 1850: 122]). This name is an anagram of the name it is replacing.
description: Published as part of Smith, Andrew B. T., 2008, South American Melolonthinae (Coleoptera: Scarabaeidae) classification and nomenclature: some problems and solutions, pp. 1-28 in Insecta Mundi 2008 (60) on page 24, DOI: 10.5281/zenodo.5170193
AMBIENT-6G: Towards standardized 6G connectivity for ambiently-powered energy neutral IoT devices
Creators: name: Famaey, Jeroen
Publisher: name: Zenodo
Year: 2025

description: Internet of Things technology is widely recognised as having the potential to tackle some of the world’s biggest challenges. However, for it to truly benefit society, the technology gap that exists in powering the growing number of wirelessly connected sensors needs to be addressed. Specifically, such sensors currently rely on primary batteries, which require frequent maintenance and replacement. AMBIENT-6G aims to address this issue, and overcome the exorbitant environmental and economic impact of battery maintenance and replacement. To this end, the project proposes a new class of energy neutral devices. They exploit ambient energy harvested from the environment to achieve decades-long maintenance-free energy autonomy. Additionally, the AMBIENT-6G project will investigate how the future 6G network infrastructure needs to be adapted to seemlessly connect these devices to the Internet. This presentation gives a high-level overview of the AMBIENT-6G project.
Bolanos et al 2017 Analysis_of_Phalaenopsis_Bud_Length_during_Meiosis JIC Taiwan.pdf
Creators: name: Bolaños-Villegas, Pablo
Publisher: name: figshare
Year: 2019
Subjects: subject: 70105 Agricultural Systems Analysis and Modelling
subject: FOS: Other agricultural sciences
subject: 70602 Horticultural Crop Improvement (Selection and Breeding)
subject: FOS: Agriculture, forestry and fisheries
subject: 70601 Horticultural Crop Growth and Development

description: Phalaenopsis orchids are a very important commercial crop in tropical countries. Nonetheless hybrids feature variations in pollen fertility due to widespread chromosomalrearrangements in meiotic chromosomes. Usually each meiotic stage in pollen can be traced on the basis of the length of the flower bud at that stage. Therefore, it washypothesized that possibly flower bud growth rates could also be affected by defects in chromosome segregation. Then, comparisons of bud length could help in identifyingvarieties or lines with defects during meiosis. In this study, a possible analyzed relationship between the number of tetrads and changes in bud length was analyzed byusing a parametric response model. Results suggest that there is a strong relationship between both variables and that it is possible to estimate tetrad formation based on budlength. It was concluded that bud length at the tetrad stage could be used as an indicatorof fertility.
Timing, glitches and braking index of PSR B0540-69
Creators: name: Cusumano, G.
name: Massaro, E.
name: Mineo, T.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We report a pulse-time history of PSR B0540$-$69 based on the analysis of an extended Data set including ASCA, BeppoSAX and RXTE observations spanning a time interval of about 8 years. This interval includes also the epoch of the glitch episode reported by Zhang et al. (2001). Our analysis shows the presence of a relevant timing noise and does not give a clear evidence of the glitch occurrence. We performed an accurate evaluation of the main timing parameters, $ν$, $\dotν$ and $\ddotν$ and derived a mean braking index of $n=2.125\pm0.001$ quite different from the lower value found by Zhang et al. (2001), but in rather good agreement with other several values reported in the literature.
description: 9 pages 5 figures, accepted by A&A, main journal
Untitled Item
Creators: name: Bolaños-Villegas, Pablo
name: Mora-Calderón, José
name: Albertazzi-Barahona, Stefano
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 60703 Plant Developmental and Reproductive Biology
subject: 60702 Plant Cell and Molecular Biology

description: Tropical orchid genus Sobralia comprises terrestrial plants with elongated, cane-like stems and large symmetrical, yet ephemeral flowers. This genus is distributed throughout Central and South America and may hold horticultural potential. Nonetheless, little is known about the reproductive viability of species that comprise this genus. In this project male meiocytes have been examined by light microscopy to determine chromosome numbers, frequency of chromosome segregation defects and the frequency of normal tetrads at the end of meiosis II. The species sampled belong to an ex situ collection managed by the Lankester Botanical Garden of the University of Costa Rica. The species were: S. amparoae, S. artropubescens, S. boucheri, S. bradeorum, S. carazoi, S. crispissima, S. danjanzenii, S. fenzliana, S. geminata, S. helleri and S. rosea. Our results indicate that meiocytes from these species have a variable diploid (2n) chromosome number of 24, 30 and 32, that segregation defects are rare and that tetrad formation rates exceed 80%, suggesting efficient meiotic progression and high pollen viability. Taken together our results suggest that at least in Costa Rica the populations sampled are reproductively healthy and amenable to horticultural breeding.
title: Lachrymae ad tumulum viri ... et clarissimi Dn. Gregorii Stannarii, SS. Theologiae Doctoris
Creators: name: Johren, Johann Martin
Publisher: name: Philipps-Universität Marburg
Year: 2025
Subjects: Generalities, Science
Allgemeines, Wissenschaft

description: Elektronische Reproduktion von: Lachrymæ ad tumulum Viri ... Et Clarissimi Dn. Gregorii Stannarii, SS. Theologiæ Doctoris : ... Academîâ Marpurgensi Professoris celeberrimi, Cùm XIII. Kal. Febr. splendido exequiarum comitatu terræ demandaretur effusæ. - Marpurgi Cattorum : Typis Salomonis Schadevvitzii, Acad. Typogr., Anno M.DC.LXX. - [4] Seiten ; 4°. - 
Standort: Universität Marburg, Universitätsbibliothek. - 
Signatur: VIII B 331 db, 23. - 
Werktitel: Lachrymae ad tumulum viri ... et clarissimi Dn. Gregorii Stannarii, SS. Theologiae Doctoris. - 
Anmerkung: Text überwiegend lateinisch, teilweise griechisch in griechischer Schrift. - 
Verfasser am Ende des Textes genannt: "Joh. Mart. Johrenivs. Gudensb." . - 
(Hassiaca)

Digitalisiert 2025