cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 3: of JAK/Stat5-mediated subtype-specific lymphocyte antigen 6 complex, locus G6D (LY6G6D) expression drives mismatch repair proficient colorectal cancer
Creators: name: Giordano, Guido
name: Parcesepe, Pietro
name: DâAndrea, Mario
name: Coppola, Luigi
name: Raimo, Tania Di
name: Remo, Andrea
name: Manfrin, Erminia
name: Fiorini, Claudia
name: Scarpa, Aldo
name: Amoreo, Carla
name: Conciatori, Fabiana
name: Milella, Michele
name: Caruso, Francesca
name: Cerulo, Luigi
name: Porras, Almudena
name: Pancione, Massimo
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Figures S1-S6. (PDF 1120 kb)
Effects of Dissipation on Quantum Phase Slippage in Charge Density Wave Systems
Creators: name: Miyake, Hiroyuki
name: Matsukawa, Hiroshi
Publisher: name: arXiv
Year: 1998
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: We study the effect of the dissipation on the quantum phase slippage via the creation of ``vortex ring'' in charge density wave (CDW) systems. The dissipation is assumed to come from the interaction with the normal electron near and inside of the vortex core. We describe the CDW by extracted macroscopic degrees of freedom, that is, the CDW phase and the radius of the ``vortex ring'', assume the ohmic dissipation, and investigate the effect in the context of semiclassical approximation. The obtained results are discussed in comparison with experiments. It turns out that the effect of such a dissipation can be neglected in experiments.
description: 9 pages (revtex), 2 figures, using epsf.sty
Generalized Ramsey Interferometry Explored with a Single Nuclear Spin Qudit
Creators: name: Godfrin, Clément
name: Ballou, Rafik
name: Bonet, Edgar
name: Ruben, Mario
name: Klyatskaya, Svetlana
name: Wernsdorfer, Wolfgang
name: Balestro, Franck
Publisher: name: arXiv
Year: 2018
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Qudits, with their state space of dimension d > 2, open fascinating experimental prospects. The quantum properties of their states provide new potentialities for quantum information, quantum contextuality, expressions of geometric phases, facets of quantum entanglement and many other foundational aspects of the quantum world, which are unapproachable with qubits. We here experimentally investigate the quantum dynamics of a qudit (d = 4) that consists of a single 3/2 nuclear spin embedded in a molecular magnet transistor geometry, coherently driven by a microwave electric field. We propose and implement three protocols based on a generalization of the Ramsey interferometry to a multilevel system. First, the standard Ramsey interference is used to measure the accumulation of geometric phases. Then, two distinct transitions of the nuclear spin are addressed to measure the phase of an iSWAP quantum gate. Finally, through a succession of two Hadamard gates, the coherence time of a 3-state superposition is measured.
description: 20 pages, 5 figures
title: Soulful bodies and superflat temporalities: a nomadology of the otaku database of world history at the ends of history
Creators: name: Boyd, David John
Publisher: name: University of Glasgow
Year: 2019
Subjects: subject: Gilles Deleuze, film philosophy, world cinema, otaku, semiotics, temporality, history, post-historical, anime, manga.

description: This thesis is a philosophical engagement with the popular, low, and vernacular theories of History performed and expressed within contemporary Japanese manga (‘comics’) and anime (‘limited animation’), and most importantly, in the global production and consumption of otaku (‘manga and anime fan’) cultural and media ecologies. My project is rooted in a reading of the post-structural theoretical inquiries of Gilles Deleuze in parallel with what media theorist McKenzie Wark calls ‘otaku philosophy’ to examine how both high and low theories articulate anxieties and fascinations with the global theoretical discourses on ‘the ends of History’ and the imminent demise of industrial modernity. The first portion of the thesis is dedicated to a reading of the Japanese counter-cultural manga movement called gekiga (‘dramatic pictures’). In traversing gekiga’s post-war lineages to its revival in the medievalism of otaku artists Miura Kentarō and Yukimura Makoto, the first part postulates on what an anti-modern, anti-historical approach – or what Deleuze and Guattari call a nomadology – might look and feel like as it is mediated in the manga form. The second portion of the thesis examines the way in which Japanese anime mobilises the philosophies of nomadology in its filmic form and transmedial properties. In a critical assessment of the anime works of the otaku-founded media corporation Type-Moon, this section explores the Fate series alongside Deleuzian film and media philosophies to explore the infinite potentialities and recursive limitations of otaku nomadologies as they materialise beyond the screen. By reassessing the rise of otaku culture as a vernacular, global, and cosmopolitan rise in the critique of modernity and History, this thesis hopes to explore how transcultural and transmedial fan philosophies of historicity, memory, and temporality can be recontextualised within current academic debates about the efficacy of post-national historiographic pedagogies explored in the fields of postcolonial studies, comparative studies, global studies, and media studies.
The u-d quark mass difference and nuclear charge symmetry breaking
Creators: name: Coon, Sidney A.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: The group theoretical analysis of the Coleman-Glashow tadpole picture of "meson-mixing" is quantitatively reproduced by the u-d constituent quark mass difference in quantum loop calculations of the self-energies of mesons. This demonstration that the Coleman-Glashow scales can be directly calculated from the constituent $u - d$ quark mass difference finishes the link between charge symmetry breaking in low energy nuclear physics and the $u - d$ quark mass difference in particle physics.
description: Invited talk presented at the XVIIth European Conference of Few-Body Problems in Physics, Evora, Portugal, Sept 2000, to be published in Nuclear Physics A, 9 pages
The Unruh vacuum and the in-vacuum in the Reissner-Nordström spacetime
Creators: name: Balbinot, Roberto
name: Fabbri, Alessandro
Publisher: name: arXiv
Year: 2023
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The Unruh vacuum is widely used as quantum state to describe black hole evaporation since near the horizon it reproduces the physical state of a quantum field, the so called in-vacuum, in the case the black hole is formed by gravitational collapse. We examine the relation between these two quantum states in the background spacetime of a Reissner-Nordström black hole (both extremal and not) highlighting similarities and striking differences.
description: one misprint corrected. 22 pages, 6 figures. Final version. Paper dedicated to Richard Kerner in the occasion of his 80th birthday
On the third-order Horadam and geometric mean sequences
Creators: name: Cerda-Morales, Gamaliel
Publisher: name: arXiv
Year: 2018
Subjects: subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: 11B37, 11B39, 11K31

description: This paper, in considering aspects of the geometric mean sequence, offers new results connecting generalized Tribonacci and third-order Horadam numbers which are established and then proved independently.
Island nucleation in thin-film epitaxy: A first-principles investigation
Creators: name: Fichthorn, Kristen A.
name: Scheffler, Matthias
Publisher: name: arXiv
Year: 2000
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We describe a theoretical study of the role of adsorbate interactions in island nucleation and growth, using Ag/Pt(111) heteroepitaxy as an example. From density-functional theory, we obtain the substrate-mediated Ag adatom pair interaction and we find that, past the short range, a repulsive ring is formed about the adatoms. The magnitude of the repulsion is comparable to the diffusion barrier. In kinetic Monte Carlo simulations, we find that the repulsive interactions lead to island densities over an order of magnitude larger than those predicted by nucleation theory and thus identify a severe limitation of its applicability.
description: 4 pages including 2 figures. Accepted for publication in Phys. Rev. Lett. Related publications can be found at http://www.fhi-berlin.mpg.de/th/paper.html
Supplementary document for High energy Q-switched Yb-doped fiber laser based on ternary layered structured Ti2AlC saturable absorber - 6077484.pdf
Creators: name: ZHANG, KANG
name: Xie, Jinyue
name: Sang, Xu
name: Sun, Guoqing
name: Tian, Ye
name: Feng, Ming
name: Song, Feng
name: Huang, Wei
Publisher: name: Optica Publishing Group
Year: 2022
Subjects: Uncategorized

description: Fig. S1. The RF spectrum of Q-switched pulses
Outgassing induced acceleration of comet 67P/Churyumov-Gerasimenko
Creators: name: Kramer, Tobias
name: Laeuter, Matthias
Publisher: name: arXiv
Year: 2019
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: Cometary activity affects the orbital motion and rotation state due to sublimation induced forces. The availability of precise rotation-axis orientation and position data from the Rosetta mission allows one to accurately determine the outgassing of comet Churyumov-Gerasimenko/67P. We derive the observed non-gravitational acceleration of 67P directly from the Rosetta spacecraft trajectory. From the non-gravitational acceleration we recover the diurnal outgassing variations and study a possible delay of the sublimation response with respect to the peak solar illumination. This allows us to compare the non-gravitational acceleration of 67P with expectations based on empirical models and common assumptions about the sublimation process. We use an iterative orbit refinement and Fourier decomposition of the diurnal activity to derive the outgassing induced non-gravitational acceleration. The uncertainties of the data reduction are established by a sensitivity analysis of an ensemble of best-fit orbits for comet 67P. We find that the Marsden non-gravitational acceleration parameters reproduce part of the non-gravitational acceleration but need to be augmented by an analysis of the nucleus geometry and surface illumination to draw conclusions about the sublimation process on the surface. The non-gravitational acceleration follows closely the subsolar latitude (seasonal illumination), with a small lag angle with respect to local noon around perihelion. The observed minor changes of the rotation axis do not favour forced precession models for the non-gravitational acceleration. In contrast to the sublimation induced torques, the non-gravitational acceleration does not put strong constraints on localized active areas on the nucleus. We find a close agreement of the orbit deduced non-gravitational acceleration and the water production independently derived from Rosetta in-situ measurement.
description: 6 pages, 3 figures, accepted for A&A special issue Rosetta 2
Additional file 1: of Relationship between dialytic parameters and reviewer confirmed arrhythmias in hemodialysis patients in the monitoring in dialysis study
Creators: name: Tumlin, James
name: Prabir Roy-Chaudhury
name: Koplan, Bruce
name: Costea, Alexandru
name: Kher, Vijay
name: Williamson, Don
name: Saurabh Pokhariyal
name: Charytan, David
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Computational Biology

description: Table S1. Baseline characteristics in individuals with and without reviewer confirmed arrhythmia during follow-up. Table S2. Laboratory values and dialysis prescription according to presence of reviewer confirmed arrhythmia. Table S3. Characteristics of sessions with and without reviewer confirmed bradycardia or asystole during follow-up. Table S4. Characteristics of sessions with and without reviewer confirmed tachycardias during follow-up. Table S5. Time-averaged laboratories according to the number of RCA observed during follow-up. Table S6. Time-averaged dialysis parameters according to the number of RCA during follow-up. (DOCX 43 kb)
Structures and Anomalies of Water
Creators: name: Yao, Chuang
name: Zhang, Xi
name: Huang, Yongli
name: Li, Lei
name: Ma, Zengsheng
name: Sun, Changqing
Publisher: name: arXiv
Year: 2018
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: Introduction of the principles of the asymmetrical, short-range O:H-O coupled oscillater pair and the basic rule for water ice, which reconciles the structure and anomalies of water ice.
description: 20 pages. In Chinese
Additional file 1 of The function role of ubiquitin proteasome pathway in the ER stress-induced AECII apoptosis during hyperoxia exposure
Creators: name: Zhu, Yue
name: Ju, Huimin
name: Lu, Hongyan
name: Tang, Wei
name: Lu, Junying
name: Wang, Qiuxia
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Developmental Biology
subject: Cancer
subject: Plant Biology
subject: FOS: Biological sciences

description: Additional file 1: The original gels and Institutional Review Board Statement.
Platelets compensate for poor thrombin generation in type 3 von Willebrand disease
Creators: name: Timea Szanto
name: Nummi, Vuokko
name: Jouppila, Annukka
name: Brinkman, Herm Jan M.
name: Lassila, Riitta
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: In type 3 von Willebrand disease (VWD3), the most severe form with absent von Willebrand factor (VWF), the bleeding phenotype is variable. Platelet contribution to the hemostatic defect in VWD3 calls upon further studies. We investigated the contribution of platelets to in vitro thrombin generation (TG) and platelet procoagulant activity in VWD3. TG was assessed by calibrated automated thrombogram (CAT) in platelet-poor (PPP) and –rich plasma (PRP) from 9 patients before and in 6 patients also 30 min after receiving their regular VWF therapy. Responsiveness of PPP to FVIII and protein S was also investigated. TG data were compared with routine laboratory variables, rotational thromboelastometry (ROTEM) and platelet expression of P-selectin and phosphatidylserine in flow cytometry. Compared with healthy controls, TG was markedly decreased in VWD3 PPP (peak thrombin was 16% of normal median), but not in PRP (77% of normal median) (p = 0.002). Six out of nine patients (67%) were high responders in their platelet P-selectin, and 5/9 (56%) in phosphatidylserine expression. Replacement therapy improved TG in PPP, while in PRP TG only modestly increased or was unaffected. In PPP, FVIII levels associated with TG and in vitro FVIII-supplemented TG inclined up to threefold. Conversely, a FVIII inhibitory antibody reduced plasma TG in all, but especially in patients with remnant FVIII levels. Inhibition of protein S improved plasma TG, particularly at low FVIII levels. ROTEM failed to detect VWD3. In VWD3, TG is reduced in PPP and regulated by FVIII and protein S, but TG is close to normal in PRP. VWD3 platelets seem to compensate for the FVIII-associated reduction in TG by their exposure of P-selectin and phosphatidylserine.
A 3D view of molecular hydrogen in Supernova 1987A
Creators: name: Larsson, J.
name: Spyromilio, J.
name: Fransson, C.
name: Indebetouw, R.
name: Matsuura, M.
name: Abellan, F. J.
name: Cigan, P.
name: Gomez, H.
name: Leibundgut, B.
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Supernova (SN) 1987A is the only young SN in which H_2 has been detected in the ejecta. The properties of the H_2 are important for understanding the explosion and the ejecta chemistry. Here, we present new VLT/SINFONI observations of H_2 in SN 1987A, focussing on the 2.12 μm (1,0)S(1) line. We find that the 3D emissivity is dominated by a single clump in the southern ejecta, with weaker emission being present in the north along the plane of the circumstellar ring. The lowest observed velocities are in the range 400-800 km/s, in agreement with previous limits on inward mixing of H. The brightest regions of H_2 coincide with faint regions of Hα, which can be explained by Hαbeing powered by X-ray emission from the ring, while the H_2 is powered by 44Ti. A comparison with ALMA observations of other molecules and dust shows that the brightest regions of H_2, CO and SiO occupy different parts of the inner ejecta and that the brightest H_2 clump coincides with a region of very weak dust emission. The latter is consistent with theoretical predictions that the H_2 should form in the gas phase rather than on dust grains.
description: Accepted for publication in ApJ
Visualizing Digital Collections of Art: Interdependencies of Images and Metadata
Creators: name: Gasser, Sonja
Publisher: name: Zenodo
Year: 2021
Subjects: digital collections of art
data visualization
digital art history
digital humanities
digital images

description: Digital collections of art museums are a data source (images and work information) for creating interactive visualizations. The content of data visualizations and the arrangement of images depend on metadata. This presentation aims to address different roles of metadata regarding visualizations and their relationship to images. Metadata is used to represent both object information and the underlying structure of visualizations, and can be extracted from image files by algorithms or enriched with information and linked to each other via vocabularies and ontologies. Examples of collection visualizations from the GLAM domain are used to explain types of metadata inherent in digital collections and the purposes they serve. Furthermore, fundamental design concepts such as interaction with digital collections, generative visualizations, and the generous user interface are considered. Interactive exploration of visualizations with changing appearance serves as a prerequisite for interpretation and gaining knowledge. Metadata-based collection visualizations are discussed in light of their usefulness and limitations as a digital method for accessing and researching digital collections in digital humanities, art history, and museums.
title: AK Region FES Data Management Plan (DMP) Template
Creators: name: Wisneskie, Theresa C
Publisher: name: United States Fish and Wildlife Service
publisherIdentifier: https://ror.org/04k7dar27
publisherIdentifierScheme: ROR
Year: 2021
Subjects: ak-fes

description: Data Management Plan (DMP) template created for use by staff in the Alaska Region Fisheries and Ecological Services program.
Lee-Yang and Langer edge singularities from analytic continuation of scaling functions
Creators: name: Karsch, Frithjof
name: Schmidt, Christian
name: Singh, Simran
Publisher: name: arXiv
Year: 2023
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We discuss the analytic continuation of scaling function in the 3-dimensional Z(2),O(2) andO(4) universality classes using the Schofield representation of the magnetic equation of state. We show that a determination of the location of Lee-Yang edge singularities and, in the case of Z(2), also the Langer edge singularity yields stable results. Results for the former are in good agreement with Functional Renormalization Group calculations. We also present results for the location of the Langer edge singularity in the 3-d,Z(2) universality class. We find that in terms of the complex scaling variable z the distance of the Langer edge singularity to the critical point agrees within errors with that of the Lee-Yang edge singularity. Furthermore the magnitude of the discontinuity along the Langer branch cut is an order of magnitude smaller than that along the Lee-Yang branch cut.
description: 13 pages, 6 figures, matches published version
Evolution of Complexity in Out-of-Equilibrium Systems by Time-Resolved or Space-Resolved Synchrotron Radiation Techniques
Creators: name: Campi, Gaetano
name: Bianconi, Antonio
Publisher: name: arXiv
Year: 2019
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: Out-of-equilibrium phenomena are attracting high interest in physics, materials science, chemistry and life sciences. In this state, the study of structural fluctuations at different length scales in time and space are necessary to achieve significant advances in the understanding of structure-functionality relationship. The visualization of patterns arising from spatiotemporal fluctuations is nowadays possible thanks to new advances in X-ray instrumentation development that combine high resolution both in space and in time. We present novel experimental approaches using high brilliance synchrotron radiation sources, fast detectors and focusing optics, joint with advanced data analysis based on automated statistical, mathematical and imaging processing tools. This approach has been used to investigate structural fluctuations in out-of-equilibrium systems in the novel field of inhomogeneous quantum complex matter at the crossing point of technology, physics and biology. In particular, we discuss how nanoscale complexity controls the emergence of high temperature superconductivity (HTS), myelin functionality and formation of hybrid organic-inorganic nanostructures. The emergent complex geometries, opening novel venues to quantum technology and to development of quantum physics of living systems, are discussed
description: 18 pages, 7 figures
Neutrino mixings as a source of lepton flavor violations
Creators: name: Boyarkin, O. M.
name: Boyarkina, G. G.
name: Vasileuskaya, D. S.
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Within the left-right symmetric model (LRM) the $Z$ boson decay into the channel $Z\toτμ$ are investigated. The branching ratios of this decay is found in the third order of the perturbation theory. The obtained expression does not equal to zero only at the existence of the neutrino mixings. It means that from the point of view of the LRM nonconservation both of neutral and of charged lepton flavors has the same nature. As a result, elucidation of the decays $Z\toł_i\overline{l}_k$ ($i\neq k$) could provide data concerned the neutrino sector structure of the LRM. The neutrino sector parameters which could be measured in that case are as follows: (i) difference of the heavy neutrino masses; (ii) heavy-heavy neutrino mixing; (iii) heavy-light neutrino mixing.
description: 12 pages, 1 figures
A Non-parametric Reconstruction of the Hubble Parameter $H(z)$ Based on Radial Basis Function Neural Networks
Creators: name: Zhang, Jian-Chen
name: Hu, Yu
name: Jiao, Kang
name: Wang, Hong-Feng
name: Xie, Yuan-Bo
name: Yu, Bo
name: Zhao, Li-Li
name: Zhang, Tong-Jie
Publisher: name: arXiv
Year: 2023
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: Accurately measuring the Hubble parameter is vital for understanding the expansion history and properties of the universe. In this paper, we propose a new method that supplements the covariance between redshift pairs to improve the reconstruction of the Hubble parameter using the OHD dataset. Our approach utilizes a cosmological model-independent radial basis function neural network (RBFNN) to describe the Hubble parameter as a function of redshift effectively. Our experiments show that this method results in a reconstructed Hubble parameter of $H_0 = 67.1\pm9.7~\mathrm{km~s^{-1}~Mpc^{-1}}$ , which is more noise-resistant and fits better with the $Λ$CDM model at high redshifts. Providing the covariance between redshift pairs in subsequent observations will significantly improve the reliability and accuracy of Hubble parametric data reconstruction. Future applications of this method could help overcome the limitations of previous methods and lead to new advances in our understanding of the universe.
description: 10 pages, 2 tables, 5 figures. Matches the published version
Quantum fluctuations in the cohesive force of metallic nanowires
Creators: name: Hoeppler, C.
name: Zwerger, W.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Based on the recent free electron model for cohesion in narrow metallic constrictions by Stafford et al., we calculate the quantum fluctuations in the cohesive force versus elongation. The fluctuations are dominated by states near the Fermi energy, thus explaining their apparently universal magnitude of order epsilon_F/lambda_F. We present numerical results for the force fluctuations in a simple geometry and show that they are well described by the contributions of a few classical periodic orbits in the Balian-Bloch trace formula for the density of states of transverse motion.
description: 4 pages, 2 figures, RevTeX, minor changes, to appear in Phys. Rev. B Rapid. Comm
MOESM1 of A novel role of glutathione S-transferase A3 in inhibiting hepatic stellate cell activation and rat hepatic fibrosis
Creators: name: Chen, Haihua
name: Gan, Qixin
name: Yang, Congying
name: Peng, Xiongqun
name: Qin, Jiao
name: Qiu, Sisi
name: Jiang, Yanzhi
name: Tu, Sha
name: He, Ying
name: Li, Shenglan
name: Yang, Huixiang
name: Tao, Lijian
name: Peng, Yu
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 1. Additional materials and methods.
Gemini NIFS survey of feeding and feedback in nearbyActive Galaxies - III. Ionized versus warm molecular gasmasses and distributions
Creators: name: Schonell, Astor J.
name: Storchi-Bergmann, Thaisa
name: Riffel, Rogemar A.
name: Riffel, Rogério
name: Bianchin, Marina
name: Dahmer-Hahn, Luis G.
name: Diniz, Marlon R.
name: Dametto, Natacha Z.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We have used the Gemini Near-Infrared Integral Field Spectrograph (NIFS) in the J and K bands to map the distribution, excitation and kinematics of the ionized HII and warm molecular gas H$_2$, in the inner few 100 pc of 6 nearby active galaxies: NGC 788, Mrk 607, NGC 3227, NGC 3516, NGC 5506, NGC 5899. {For most galaxies, this is the first time that such maps have been obtained}. The ionized and H$_2$ gas show distinct kinematics: while the H$_2$ gas is mostly rotating in the galaxy plane with low velocity dispersion ($σ$), the ionized gas usually shows signatures of outflows associated with higher $σ$ values, most clearly seen in the [FeII] emission line. These two gas species also present distinct flux distributions: the H$_2$ is more uniformly spread over the whole galaxy plane, while the ionized gas is more concentrated around the nucleus and/or collimated along the ionization axis of its Active Galactic Nucleus (AGN), presenting a steeper gradient in the average surface mass density profile than the H$_2$ gas. The total HII masses cover the range $2\times10^5-2\times10^7$ M$_{\odot}$, with surface mass densities in the range 3-150 M$_{\odot}$ pc$^{-2}$, while for the warm H$_2$ the values are 10$^{3-4}$ times lower. We estimate that the available gas reservoir is at least $\approx$ 100 times more massive than needed to power the AGN. If this gas form new stars the star-formation rates, obtained from the Kennicutt-schmidt scalling relation, are in the range 1-260$\times$ 10$^{-3}$ M$_{\odot}$ yr$^{-1}$. But the gas will also - at least in part - be ejected in the form of the observed otflows.
Darwin-Foldy term and proton charge radius
Creators: name: Bawin, M.
name: Coon, S. A.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: In this contribution we study the Dirac equation for a finite size proton in an external electric field with explicit introduction of Dirac-Pauli form factors. Our aim is twofold. On the one hand, we wish to study whether our conclusions regarding the exact cancellation between Dirac form factor and Foldy term contributions occurring for the neutron still hold for the proton. On the other hand, we wish to clearly illustrate some of the specific features of the description of a composite particle like the proton with the Dirac equation.
description: contribution to XVIIth European Conference of Few-Body Problems in Physics, Evora, Portugal Sept 2000, to be published in Nucl. Phys. A
KLF11 (Krüppel-Like Factor 11) Inhibits Arterial Thrombosis via Suppression of Tissue Factor in the Vascular Wall
Creators: name: Wenying Liang
name: Yanbo Fan
name: Haocheng Lu
name: Jinjian Sun
name: Ziyi Chang
name: Wenting Hu
name: Huilun Wang
name: Tianqing Zhu
name: Jintao Wang
name: Reheman Adili
name: Garcia-Barrio, Minerva
name: Holinstat, Michael
name: Eitzman, Daniel T.
name: Jifeng Zhang
name: Y. Eugene Chen
Publisher: name: Health Research Alliance
Year: 2019
Subjects: subject: 110201 Cardiology (incl. Cardiovascular Diseases)
subject: FOS: Clinical medicine

description: Using a ferric chloride–induced thrombosis model, we found that the occlusion time was significantly reduced in conventional Klf11 knockout mice, whereas bone marrow transplantation could not rescue this phenotype, suggesting that vascular KLF11 is critical for inhibition of arterial thrombosis. We further demonstrated that vascular smooth muscle cell–specific Klf11 knockout mice also exhibited significantly reduced occlusion time. The expression of tissue factor (encoded by the F3 gene), a main initiator of the coagulation cascade, was increased in the artery of Klf11 knockout mice, as determined by real-time quantitative polymerase chain reaction and immunofluorescence. Furthermore, vascular smooth muscle cells isolated from Klf11 knockout mouse aortas showed increased tissue factor expression, which was rescued by KLF11 overexpression. In human aortic smooth muscle cells, small interfering RNA–mediated knockdown of KLF11 increased tissue factor expression. Consistent results were observed on adenovirus-mediated overexpression of KLF11. Mechanistically, KLF11 downregulates F3 at the transcriptional level as determined by reporter and chromatin immunoprecipitation assays. In conclusion, our data demonstrate that KLF11 is a novel transcriptional suppressor of F3 in vascular smooth muscle cells, constituting a potential molecular target for inhibition of arterial thrombosis.
Interplay of superconductivity with structural phases in a generalized t-J model
Creators: name: Zeyher, R.
name: Cappelluti, E.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: The phase diagram of the t-J-V model is discussed using a 1/N expansion in terms of X operators. It is shown that a flux phase of d-wave symmetry is stabilized by the Coulomb interaction V at intermediate dopings and competes with d-wave superconductivity. Since the flux wave instability is stronger than the superconducting one optimal doping is essentially determined by the onset of the flux phase. Below optimal doping the flux phase coexists with superconductivity at low and exists as a pseudo gap phase at higher temperatures. It is also found that the flux phase boundary is much less sensitive to impurity scattering than the boundary for superconductivity in agreement with experiments in Zn doped La-214 and (Y,Ca)-123.
description: 4 pages, 3 figures, Proceed. M2S-HTSC-VI Houston
Radiative decays \$D^*_{(s)}\to D_{(s)}γ$ in covariant confined quark model
Creators: name: Tran, Chien-Thang
name: Ivanov, Mikhail A.
name: Santorelli, Pietro
name: Vo, Quang-Chau
Publisher: name: arXiv
Year: 2023
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: Radiative decays $D^*_{(s)}\to D_{(s)}γ$ are revisited in light of new experimental data from the \textit{BABAR} and BESIII collaborations. The radiative couplings $g_{D^*Dγ}$ encoding nonperturbative QCD effects are calculated in the framework of the covariant confined quark model developed by us. We compare our results with other theoretical studies and experimental data. The couplings (in $\textrm{GeV}^{-1}$) $|g_{D^{*+}D^+γ}| = 0.45(9)$ and $|g_{D^{*0}D^0γ}| = 1.72(34)$ calculated in our model agree with the corresponding experimental data $|g_{D^{*+}D^+γ}|=0.47(7)$ and $|g_{D^{*0}D^0γ}|=1.77(16)$. The most interesting case is the decay $D^*_s\to D_sγ$, for which a recent prediction based on light-cone sum rules at next-to-leading order $|g_{D^*_s D_sγ}|=0.60(19)$ deviates from the first (and only to date) lattice QCD result $|g_{D^*_s D_sγ}|=0.11(2)$ at nearly $3σ$. Our calculation yields $|g_{D^*_s D_sγ}|=0.29(6)$, which falls somehow between the two mentioned results, although it is larger than those predicted in other studies using quark models or QCD sum rules.
description: 27 pages, 5 figures, 7 tables, fix typos, add references, and match with journal version
Toxoplasma gondii
Creators: name: Scherrer, Patrick
name: Ryser-Degiorgis, Marie-Pierre
name: Marti, Iris A.
name: St
name: Borel, ephanie
name: Frey, Caroline F.
name: Mueller, Norbert
name: Ruetten, Maja
name: Basso, Walter
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Chromista
Miozoa
Eucoccidiida
Sarcocystidae
Toxoplasma
Toxoplasma gondii

description: 3.2. Detection of T. gondii oocysts and enteroepithelial stages
 T. gondii -like oocysts were found in 3/176 (1.7%, 95% CI: 0–3.6) faecal samples (Fig. 2). All three samples tested positive for T. gondii - DNA and negative for H. hammondi. All the three lynx with oocysts in faecal samples were juvenile animals, with two of them being antibodypositive. T. gondii enteroepithelial stages were detected in small intestine sections from two of the animals (W20_8385 and W21_4446) (Fig. 2). In the third animal (W14_3480) such evaluation was compromised by autolysis.
 3.3. PCR on fresh tissue samples
 A total of 11 out of 150 analysed fresh tissue samples from 10 out of 92 (10.9%, 95% CI: 4.5–17.2) lynx, from which fresh tissue samples were available, were positive for T. gondii -DNA by qPCR. Positive samples were 7/88 skeletal muscle, 2/26 heart muscle and 2/36 brain tissue. One lynx tested positive in two tissues (skeletal and heart muscle).
description: Published as part of Scherrer, Patrick, Ryser-Degiorgis, Marie-Pierre, Marti, Iris A., St, Borel, ephanie, Frey, Caroline F., Mueller, Norbert, Ruetten, Maja & Basso, Walter, 2023, Exploring the epidemiological role of the Eurasian lynx (Lynx lynx) in the life cycle of Toxoplasma gondii, pp. 1-10 in International Journal for Parasitology: Parasites and Wildlife 21 on page 4, DOI: 10.1016/j.ijppaw.2023.03.005, http://zenodo.org/record/10668262
$O(4)$-symmetric position-space renormalization of lattice operators
Creators: name: Tomii, Masaaki
name: Christ, Norman H.
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: We extend the position-space renormalization procedure, where renormalization factors are calculated from Green's functions in position space, by introducing a technique to take the average of Green's functions over spheres. In addition to reducing discretization errors, this technique enables the resulting position-space correlators to be evaluated at any physical distance, making them continuous functions similar to the $O(4)$-symmetric position-space Green's functions in the continuum theory but with a residual dependence on a regularization parameter, the lattice spacing $a$. We can then take the continuum limit of these renormalized quantities calculated at the same physical renormalization scale $|x|$ and investigate the resulting $|x|$-dependence to identify the appropriate renormalization window. As a numerical test of the spherical averaging technique, we determine the renormalized light and strange quark masses by renormalizing the scalar current. We see a substantial reduction of discretization effects on the scalar current correlator and an enhancement of the renormalization window. The numerical simulation is carried out with $2+1$-flavor domain-wall fermions at three lattice cutoffs in the range 1.79--3.15~GeV.
description: 34 pages, 12 figures
Novel Position-Space Renormalization Group for Bond Directed Percolation in Two Dimensions
Creators: name: Kaya, H.
name: Erzan, A.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: A new position-space renormalization group approach is investigated for bond directed percolation in two dimensions. The threshold value for the bond occupation probabilities is found to be $p_c=0.6443$. Correlation length exponents on time (parallel) and space (transverse) directions are found to be $ν_\parallel=1.719$ and $ν_\perp=1.076$, respectively, which are in very good agreement with the best known series expansion results.
description: Latex - Revtex, 5 pages with 6 figures, to be appeared in Physica A
Enhancement of HI absorption associated with the $z=3.1$ large-scale proto-cluster and characteristic structures with AGNs sculptured over Gpc scale in the SSA22 field
Creators: name: Hayashino, T.
name: Inoue, A. K.
name: Kousai, K.
name: Kashikawa, N.
name: Mawatari, K.
name: Matsuda, Y.
name: Tejos, N.
name: Prochaska, J. X.
name: Iwata, I.
name: Noll, S.
name: Burgarella, D.
name: Yamada, T.
name: Akiyama, M.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: In the SSA22 field which exhibits a large-scale proto-cluster at $z=3.1$, we carried out a spectroscopic survey for Lyman Break Galaxies (LBGs) with the VLT/VIMOS and identified 78 confident LBGs at $z=2.5$--4. We stacked their spectra in the observer's frame by using a sophisticated method. Analyzing the composite spectrum, we have revealed that the large-scale proto-cluster at $z=3.1$ has a strong HI absorption dip of rest-frame equivalent width of $-1.7$ A. Another strong absorption dip found at $z=3.28$ is associated with a modestly high-density LBG peak, similar to that at $z=3.1$. We have also detected an HI transparency peak at $z=2.98$ in the composite spectrum, coincident with a void in the LBG distribution. In this paper, we also investigated the relation between LBGs, HI gas and AGNs at $z=3$--4 in the SSA22 field. Two AGNs at $z=3.353$ and 3.801 are, respectively, associated with the LBG concentration of an overdensity factor $δ_{\rm LBG}\simeq2$ in the present statistics. Another structure at $z=3.453$ is remarkable: 20 comoving Mpc scale dense HI gas which is not associated with any apparent LBG overdensity but involving a pair of AGNs. Such structure may be a new type of the AGN-matter correlation. If the inhomogeneous structures over a comoving Gpc scale found in this paper are confirmed with sufficient statistics in the future, the SSA22 field will become a key region to test the standard cold dark matter structure formation scenario.
description: MNRAS accepted, 24 pages, 20 figures, 8 tables
Gelechiidae Stainton 1854
Creators: name: Landry, Bernard
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Gelechiidae

description: Gelechiidae  J’ai déterminé les spécimens à la base des mentions suivantes à l’aide d’Elsner et al. (1999) et d’Huemer & Karsholt (1999, 2010). Peter Huemer m’a gentiment confirmé mes déterminations lorsque je lui ai envoyé des photos de mes spécimens.
description: Published as part of Landry, Bernard, 2013, Vingt-et-un ajouts et une suppression à la Liste des Lépidoptères du Canton de Genève B L, pp. 115-122 in Entomo Helvetica 6 on page 119, DOI: 10.5169/seals-986047, http://zenodo.org/record/8057425
Supplementary document for Monitoring sidewall tilting of pixelated nanogratings in 3D display - 6183612.pdf
Creators: name: Chen, Chao
name: Chen, Xiuguo
name: Sheng, Sheng
name: Xia, Zhongwen
name: Shi, Jiacheng
name: Qiao, Wen
name: Liu, Shiyuan
Publisher: name: Optica Publishing Group
Year: 2023
Subjects: Uncategorized

description: Details of modeling and data
Meson-exchange $πN$ Models in Three-Dimensional Bethe-Salpeter Formulation
Creators: name: Hung, Cheng-Tsung
name: Yang, Shin Nan
name: Lee, T. -S. H.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: The pion-nucleon scattering is investigated by using several three-dimensional reduction schemes of the Bethe-Salpeter equation for a model Lagrangian involving $π$, $N$, $Δ$, $ρ$, and $σ$ fields. It is found that all of the resulting meson-exchange models can give similar good descriptions of the $πN$ scattering data up to 400 MeV. However they have significant differences in describing the $πNN$ and $πNΔ$ form factors and the $πN$ off-shell t-matrix elements. We point out that these differences can be best distinguished by investigating the near threshold pion production from nucleon-nucleon collisions and pion photoproduction on the nucleon. The consequences of using these models to investigate various pion-nucleus reactions are also discussed.
description: 29 pages, 3 Tables, 7 figures, Latex, changed the unit of figures 4,5,6 and 7
Chemical constituents from the dish-cultured Antrodia camphorata and their cytotoxic activities
Creators: name: Li, Bin
name: Lu, Ying-Ying
name: Lo, Jen-Yu
name: Qiao, Xue
name: Ye, Min
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: One new meroterpenoid, antroquinonol Y (1), a new ergostane-type sterol, antcamphin Y (2), and a new ergostane-type triterpenoid, antcamphin Z (3), together with 10 known ones (4–13), were isolated from the dish-cultured fungus Antrodia camphorata. Their structures were characterized by extensive NMR and HRESIMS data analyses. The absolute configurations were elucidated by experimental and calculated electronic circular dichroism (ECD) spectral analyses and chemical semi-synthesis. Compounds 1, 3, and 5 exhibited potent inhibitory activities against four human cancer cell lines (U251, HL60, SW480, and A549 cells) with IC50 values of 4.6 to 11.7 μM.
Ease on Down the Code: Complex Collaborative Qualitative Coding Simplified with 'Code Wizard'
Creators: name: Ganji, Abbas
name: Orand, Mania
name: McDonald, David W.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Human-Computer Interaction (cs.HC)
subject: FOS: Computer and information sciences

description: This paper describes the design and development of a preliminary qualitative coding tool as well as a method to improve the process of achieving inter-coder reliability (ICR) in small teams. Software applications that support qualitative coding do not sufficiently assist collaboration among coders and overlook some fundamental issues related to ICR. We propose a new dimension of collaborative coding called "coders' certainty" and demonstrate its ability to illustrate valuable code disagreements that are missing from existing approaches. Through a case study, we describe the utility of our tool, Code Wizard, and how it helped a group of researchers effectively collaborate to code naturalistic observation data. We report the valuable lessons we learned from the development of our tool and method: (1) identifying coders' certainty constitutes an important part of determining the quality of data analysis and facilitates identifying overlapping and ambiguous codes, (2) making the details of coding process visible helps streamline the coding process and leads to a sense of ownership of the research results, and (3) there is valuable information hidden in coding disagreements that can be leveraged for improving the process of data analysis.
On the Bragg, Leibfried, and Modified Leibfried Numbers
Creators: name: Burakovsky, Leonid
name: Preston, Dean L.
name: Silbar, Richard R.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: The Bragg, Leibfried, and modified Leibfried numbers are defined in the context of a theory of dislocation-mediated melting, and their values are determined from the properties of the dislocation ensemble at the melting temperature. The approximate numerical coincidence of the Bragg and modified Leibfried numbers is explained. The parameter K in the definition of the modified Leibfried number is shown to be the natural logarithm of the effective coordination number. Our analysis reveals that the Bragg number can be considered an elemental constant, in contrast to the Leibfried and modified Leibfried numbers.
description: 5 pages, LaTeX