cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1 of Intensified tuberculosis treatment to reduce the mortality of HIV-infected and uninfected patients with tuberculosis meningitis (INTENSE-TBM): study protocol for a phase III randomized controlled trial
Creators: name: Maitre, Thomas
name: Bonnet, Maryline
name: Calmy, Alexandra
name: Raberahona, Mihaja
name: Rakotoarivelo, Rivonirina Andry
name: Rakotosamimanana, Niaina
name: Ambrosioni, Juan
name: Miró, José M.
name: Debeaudrap, Pierre
name: Muzoora, Conrad
name: Davis, Angharad
name: Meintjes, Graeme
name: Wasserman, Sean
name: Wilkinson, Robert
name: Eholié, Serge
name: Nogbou, Frédéric Ello
name: Calvo-Cortes, Maria-Camilla
name: Chazallon, Corine
name: Machault, Vanessa
name: Anglaret, Xavier
name: Bonnet, Fabrice
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1. Modified MARAIS Score (modified from Marais et al. [27]).
Effects of a Porphyromonas gingivalis infection on inflammatory mediator response and pregnancy outcome in hamsters.
Creators: name: The University of North Carolina at Chapel Hill University Libraries
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 1994

description: This study examines the effects of various localized, nondissemination challenges of Porphyromonas gingivalis on inflammatory mediator production and pregnancy outcome in the golden hamster. Live or heat-killed (HK) organisms were inoculated into a previously implanted subcutaneous tissue chamber on the 8th day of gestation to determine the effects on fetal weight, viability, and resorption. In one group of animals, HK organisms were inoculated prior to mating to determine the effects of previous exposure on day-8 gestational challenges. Chamber contents were assayed at 1 and 5 days after challenge for prostaglandin E2 (PGE2) and tumor necrosis factor alpha (TNF-alpha). All P. gingivalis challenges caused a significant increase in chamber PGE2 and TNF-alpha at P < 0.01 in the following order of potency: HK < Live < HK+Live. For example, following the HK+Live challenge, PGE2 levels increased from 4.7 pg/ml at baseline to 362 pg/ml at day 5 and TNF-alpha increased from 26.4 pg/ml to 724 pg/ml at day 5. The same order of potency of the various challenges was maintained with regard to the toxic effects of P. gingivalis on pregnancy outcome. For the HK+Live challenge, fetal weight was decreased 24%; embryolethality increased to 26.5% and the percent fetal resorption increased to 10.6% compared with control animal levels. There was a statistically significant association between increasing levels of both PGE2 and TNF-alpha and fetal growth retardation and embryolethality at P < 0.001. These data suggest that infections with gram-negative periodontal pathogens can elicit adverse pregnancy outcomes and that the levels of PGE2 and TNF-alpha produced as a result of challenge are associated with the severity of fetal effect.
Effects of Escherichia coli and Porphyromonas gingivalis lipopolysaccharide on pregnancy outcome in the golden hamster.
Creators: name: The University of North Carolina at Chapel Hill University Libraries
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 1994

description: This report describes the effects of two gram-negative bacterial endotoxin (lipopolysaccharide ALPS]) preparations on hamster pregnancy outcome variables. Single intravenous challenges with Escherichia coli and Porphyromonas gingivalis LPS on day 8 of pregnancy produced dose-dependent effects on fetal malformation and fetal resorption with E. coli LPS having potent embryolethal effects. Premating maternal exposure to P. gingivalis produced embryolethal effects similar to those of E. coli. These data suggest that maternal exposure to P. gingivalis LPS prior to and during pregnancy can induce deleterious effects on the developing fetus.
Music Culture and the Self-Presentation of Indigenous Musicians on Social Media in Contemporary Taiwan
Creators: name: Lin, Guo-ting
Publisher: name: University of Westminster
Year: 2021

description: The purpose of this research was to provide an indigenous perspective of popular culture in Taiwan as a means to re-examine Taiwanese contemporary identity. In-depth qualitative interviews and digital ethnography were adopted to collect data about indigenous musicians' self-presentation on social media. Being an indigenous musician in postmodern Taiwan is a highly contested phenomenon, as social media offers a double-edged sword requiring a conjunctional analysis that delves into both the past and the contemporary. This research unpacks the performance of contemporary indigenous musicians in the post-digital media age and offers five findings. Firstly, the indigenous musicians interviewed for the purpose of this research use social media to perform their indigenous identities to wider audiences, both indigenous and nonindigenous. Secondly, identity performances of indigenous musicians on social media are inspired by and reflect the richness and diversity of Taiwanese society. Thirdly, indigenous musicians act as spatio-temporal bridges commuting between urban and rural spaces, on- and offline and between tradition and contemporaneity. Fourthly, indigenous musicians in Taiwan do not only create and perform music, but also give a huge importance to defining and re-articulating what they think indigenous music is and what role it should play in contemporary Taiwanese society. Finally, online selfpresentation provides indigenous musicians with an opportunity to present their performed identities beyond the local to a global audience, allowing non-indigenous audiences to participate in their culture. Using empirical evidence from the interviews and the digital ethnography, this thesis demonstrates how identity performances by Taiwanese indigenous musicians oscillate between three different and inter-related identity processes: ‘doing’ indigenous, ‘being indigenous’, and ‘becoming’ indigenous.
Predicting the production of neutron rich heavy nuclei in multi-nucleon transfer reactions using GRAZING-F
Creators: name: Yanez, R.
name: Loveland, W.
Publisher: name: arXiv
Year: 2015
Subjects: subject: Nuclear Experiment (nucl-ex)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Background: Multi-nucleon transfer reactions have recently attracted attention as a possible path to the synthesis of new neutron-rich heavy nuclei. Purpose: We study transfer reactions involving massive nuclei with the intention of understanding if the semi-classical model GRAZING coupled to an evaporation and fission competition model can satisfactory reproduce experimental data on transfer reactions in which fission plays a role. Methods: We have taken the computer code GRAZING and have added fission competition to it (GRAZING-F) using our current understanding of $Γ_n/Γ_f$, fission barriers and level densities. Results: The code GRAZING-F seems to satisfactory reproduce experimental data for $+1p$, $+2p$ and $+3p$ transfers, but has limitations in reproducing measurements of larger above-target and below-target transfers. Nonetheless, we use GRAZING-F to estimate production rates of neutron-rich $N=126$ nuclei, actinides and transactinides. Conclusions: The GRAZING code, with appropriate modifications to account for fission decay as well as neutron emission by excited primary fragments, does not predict large cross sections for multi-nucleon transfer reactions leading to neutron-rich transactinide nuclei, but predicts opportunities to produce new neutron-rich actinide isotopes.
description: Addendum: R. Yanez and W. Loveland, A web interface to GRAZING-F (grazingf.oregonstate.edu)
Identification and characterization of the Treponema pallidum tpn50 gene, an ompA homolog.
Creators: name: The University of North Carolina at Chapel Hill University Libraries
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 1994

description: Treponema pallidum is a pathogenic spirochete that has no known genetic exchange mechanisms. In order to identify treponemal genes encoding surface and secreted proteins, we carried out TnphoA mutagenesis of a T. pallidum genomic DNA library in Escherichia coli. Several of the resulting clones expressed enzymatic T. pallidum-alkaline phosphatase fusion proteins. The DNA sequence of the 5' portion of a number of the treponemal genes was obtained and analyzed. A recombinant clone harboring plasmid p4A2 that encoded a treponemal protein with an approximate molecular mass of 50,000 Da was identified. Plasmid p4A2 contained an open reading frame of 1,251 nucleotides that resulted in a predicted protein of 417 amino acids with a calculated molecular mass of 47,582 Da.
Additional file 1 of Co-designing person-centred quality indicator implementation for primary care in Alberta: a consensus study
Creators: name: Manalili, Kimberly
name: Scott, Catherine M.
name: Hemmelgarn, Brenda
name: O’Beirne, Maeve
name: Bailey, Allan L.
name: Haener, Michel K.
name: Banerjee, Cyrene
name: Peters, Sue P.
name: Chiodo, Mirella
name: Aghajafari, Fariba
name: Santana, Maria J.
Publisher: name: figshare
Year: 2022
Subjects: subject: Information Systems
subject: FOS: Computer and information sciences

description: Additional file 1. The table provided shows where each implementation strategy is mapped to one or more broad strategy from the Consolidated Framework for Implementation Research (CFIR) - Expert Recommendations for Implementing Change (ERIC) Strategy Matching Tool.
N2W8
Creators: name: Alyssah Clavien
Year: 2023
Subjects: subject: Mesoamerica
valueUri: https://core.tdar.org/browse/geographic-keyword/61/mesoamerica
subject: Basin of Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/3/basin-of-mexico
subject: Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/134/mexico
subject: Mexico (State / Territory)
valueUri: https://core.tdar.org/browse/geographic-keyword/326/mexico-state-territory
subject: United Mexican States (Country)
valueUri: https://core.tdar.org/browse/geographic-keyword/438/united-mexican-states-country
subject: Central Mexico, Teotihuacan Valley
valueUri: https://core.tdar.org/browse/geographic-keyword/7/central-mexico-teotihuacan-valley
subject: Central Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/135/central-mexico
subject: Teotihuacan Valley
valueUri: https://core.tdar.org/browse/geographic-keyword/154/teotihuacan-valley
subject: Teotihuacan
valueUri: https://core.tdar.org/browse/geographic-keyword/202/teotihuacan
subject: Valley of Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/44/valley-of-mexico
subject: Classic Period
valueUri: https://core.tdar.org/browse/temporal-keyword/125/classic-period
subject: Terminal Formative
valueUri: https://core.tdar.org/browse/temporal-keyword/67/terminal-formative
subject: Teotihuacan Period
valueUri: https://core.tdar.org/browse/temporal-keyword/7765/teotihuacan-period
subject: Early Classic
valueUri: https://core.tdar.org/browse/temporal-keyword/5560/early-classic
subject: Teotihuacan
valueUri: https://core.tdar.org/browse/culture-keyword/7527/teotihuacan
subject: Teotihuacano
valueUri: https://core.tdar.org/browse/culture-keyword/9224/teotihuacano
subject: Teotihuacan
valueUri: https://core.tdar.org/browse/site-name/92/teotihuacan
subject: Town / City
valueUri: https://core.tdar.org/browse/site-type/255/town-city
subject: Domestic Structure or Architectural Complex
valueUri: https://core.tdar.org/browse/site-type/251/domestic-structure-or-architectural-complex
subject: Settlements
valueUri: https://core.tdar.org/browse/site-type/252/settlements
subject: Systematic Survey
valueUri: https://core.tdar.org/browse/investigation-type/12/systematic-survey

description: Site Survey Form Scan for Square N2W8.
Immunoblot analyses of chimpanzee sera after infection and after immunization and challenge with Mycoplasma pneumoniae.
Creators: name: The University of North Carolina at Chapel Hill University Libraries
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 1994

description: Consecutive weekly or biweekly serum specimens obtained during a 3- or 4-month study from 16 chimpanzees were examined by immunoblot analyses to identify the immunogenic components of Mycoplasma pneumoniae. Six experimentally infected chimpanzees showed significant signs of overt disease, including cough, pharyngitis, rhinitis, fever, and loss of appetite. The sera of these infected chimpanze recognized from 17 to 20 protein bands. Two control chimpanzees that were not inoculated were included in the study. Three chimpanzees immunized with a formalin-inactivated OSU-1A vaccine and three chimpanzees immunized with an experimental acellular vaccine showed minimal signs of disease on challenge.
S6W3
Creators: name: Alyssah Clavien
Year: 2023
Subjects: subject: Mesoamerica
valueUri: https://core.tdar.org/browse/geographic-keyword/61/mesoamerica
subject: Basin of Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/3/basin-of-mexico
subject: Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/134/mexico
subject: Mexico (State / Territory)
valueUri: https://core.tdar.org/browse/geographic-keyword/326/mexico-state-territory
subject: United Mexican States (Country)
valueUri: https://core.tdar.org/browse/geographic-keyword/438/united-mexican-states-country
subject: Central Mexico, Teotihuacan Valley
valueUri: https://core.tdar.org/browse/geographic-keyword/7/central-mexico-teotihuacan-valley
subject: Central Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/135/central-mexico
subject: Teotihuacan Valley
valueUri: https://core.tdar.org/browse/geographic-keyword/154/teotihuacan-valley
subject: Teotihuacan
valueUri: https://core.tdar.org/browse/geographic-keyword/202/teotihuacan
subject: Valley of Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/44/valley-of-mexico
subject: Classic Period
valueUri: https://core.tdar.org/browse/temporal-keyword/125/classic-period
subject: Terminal Formative
valueUri: https://core.tdar.org/browse/temporal-keyword/67/terminal-formative
subject: Teotihuacan Period
valueUri: https://core.tdar.org/browse/temporal-keyword/7765/teotihuacan-period
subject: Early Classic
valueUri: https://core.tdar.org/browse/temporal-keyword/5560/early-classic
subject: Teotihuacan
valueUri: https://core.tdar.org/browse/culture-keyword/7527/teotihuacan
subject: Teotihuacano
valueUri: https://core.tdar.org/browse/culture-keyword/9224/teotihuacano
subject: Teotihuacan
valueUri: https://core.tdar.org/browse/site-name/92/teotihuacan
subject: Town / City
valueUri: https://core.tdar.org/browse/site-type/255/town-city
subject: Domestic Structure or Architectural Complex
valueUri: https://core.tdar.org/browse/site-type/251/domestic-structure-or-architectural-complex
subject: Settlements
valueUri: https://core.tdar.org/browse/site-type/252/settlements
subject: Systematic Survey
valueUri: https://core.tdar.org/browse/investigation-type/12/systematic-survey

description: Site Survey Form Scan for Square S6W3.
Global Conformal Invariants of Submanifolds
Creators: name: Mondino, Andrea
name: Nguyen, Huy The
Publisher: name: arXiv
Year: 2015
Subjects: subject: Differential Geometry (math.DG)
subject: FOS: Mathematics

description: The goal of the present paper is to investigate the algebraic structure of global conformal invariants of submanifolds. These are defined to be conformally invariant integrals of geometric scalars of the tangent and normal bundle. A famous example of a global conformal invariant is the Willmore energy of a surface. In codimension one we classify such invariants, showing that under a structural hypothesis (more precisely we assume the integrand depends separately on the intrinsic and extrinsic curvatures, and not on their derivatives) the integrand can only consist of an intrinsic scalar conformal invariant, an extrinsic scalar conformal invariant and the Chern-Gauss-Bonnet integrand. In particular, for codimension one surfaces, we show that the Willmore energy is the unique global conformal invariant, up to the addition of a topological term (the Gauss curvature, giving the Euler Characteristic by the Gauss Bonnet Theorem). A similar statement holds also for codimension two surfaces, once taking into account an additional topological term given by the Chern-Gauss-Bonnet integrand of the normal bundle. We also discuss existence and properties of natural higher dimensional (and codimensional) generalizations of the Willmore energy.
description: 28 pages, final version to appear in the Annales de l'Institut Fourier
Variation in hydrogen peroxide sensitivity between different strains of Neisseria gonorrhoeae is dependent on factors in addition to catalase activity.
Creators: name: The University of North Carolina at Chapel Hill University Libraries
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 1994

description: Catalase, which catalyzes the reduction of hydrogen peroxide to oxygen and water, is considered the primary defense of Neisseria gonorrhoeae against exogenous hydrogen peroxide. Recent reports have demonstrated drastically different sensitivities of the organism to hydrogen peroxide ranging from greater than 80% survival after challenge with 30 mM hydrogen peroxide to less than 0.001% survival after challenge with 10 mM hydrogen peroxide. In this study, we have examined the hydrogen peroxide sensitivities of six clinical gonococcal isolates. The study demonstrates that the variations in gonococcal hydrogen peroxide sensitivities previously reported can be attributed to (i) differences in experimental methods employed or (ii) variation among different gonococcal strains.
S1W7
Creators: name: Alyssah Clavien
Year: 2023
Subjects: subject: Mesoamerica
valueUri: https://core.tdar.org/browse/geographic-keyword/61/mesoamerica
subject: Basin of Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/3/basin-of-mexico
subject: Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/134/mexico
subject: Mexico (State / Territory)
valueUri: https://core.tdar.org/browse/geographic-keyword/326/mexico-state-territory
subject: United Mexican States (Country)
valueUri: https://core.tdar.org/browse/geographic-keyword/438/united-mexican-states-country
subject: Central Mexico, Teotihuacan Valley
valueUri: https://core.tdar.org/browse/geographic-keyword/7/central-mexico-teotihuacan-valley
subject: Central Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/135/central-mexico
subject: Teotihuacan Valley
valueUri: https://core.tdar.org/browse/geographic-keyword/154/teotihuacan-valley
subject: Teotihuacan
valueUri: https://core.tdar.org/browse/geographic-keyword/202/teotihuacan
subject: Valley of Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/44/valley-of-mexico
subject: Classic Period
valueUri: https://core.tdar.org/browse/temporal-keyword/125/classic-period
subject: Terminal Formative
valueUri: https://core.tdar.org/browse/temporal-keyword/67/terminal-formative
subject: Teotihuacan Period
valueUri: https://core.tdar.org/browse/temporal-keyword/7765/teotihuacan-period
subject: Early Classic
valueUri: https://core.tdar.org/browse/temporal-keyword/5560/early-classic
subject: Teotihuacan
valueUri: https://core.tdar.org/browse/culture-keyword/7527/teotihuacan
subject: Teotihuacano
valueUri: https://core.tdar.org/browse/culture-keyword/9224/teotihuacano
subject: Teotihuacan
valueUri: https://core.tdar.org/browse/site-name/92/teotihuacan
subject: Town / City
valueUri: https://core.tdar.org/browse/site-type/255/town-city
subject: Domestic Structure or Architectural Complex
valueUri: https://core.tdar.org/browse/site-type/251/domestic-structure-or-architectural-complex
subject: Settlements
valueUri: https://core.tdar.org/browse/site-type/252/settlements
subject: Systematic Survey
valueUri: https://core.tdar.org/browse/investigation-type/12/systematic-survey

description: Site Survey Form Scan for Square S1W7
A Hidden Symmetry of the Galileon
Creators: name: Hinterbichler, Kurt
name: Joyce, Austin
Publisher: name: arXiv
Year: 2015
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We show that there is a special choice of parameters for which the galileon theory is invariant under an enhanced shift symmetry whose non-linear part is quadratic in the coordinates. This symmetry fixes the theory to be equivalent to one with only even powers of the field, with no free coefficients, and accounts for the improved soft limit behavior observed in the quartic galileon S-matrix.
description: 5 pages. v3 typos fixed
Salient Object Detection: A Benchmark
Creators: name: Borji, Ali
name: Cheng, Ming-Ming
name: Jiang, Huaizu
name: Li, Jia
Publisher: name: arXiv
Year: 2015
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: We extensively compare, qualitatively and quantitatively, 40 state-of-the-art models (28 salient object detection, 10 fixation prediction, 1 objectness, and 1 baseline) over 6 challenging datasets for the purpose of benchmarking salient object detection and segmentation methods. From the results obtained so far, our evaluation shows a consistent rapid progress over the last few years in terms of both accuracy and running time. The top contenders in this benchmark significantly outperform the models identified as the best in the previous benchmark conducted just two years ago. We find that the models designed specifically for salient object detection generally work better than models in closely related areas, which in turn provides a precise definition and suggests an appropriate treatment of this problem that distinguishes it from other problems. In particular, we analyze the influences of center bias and scene complexity in model performance, which, along with the hard cases for state-of-the-art models, provide useful hints towards constructing more challenging large scale datasets and better saliency models. Finally, we propose probable solutions for tackling several open problems such as evaluation scores and dataset bias, which also suggest future research directions in the rapidly-growing field of salient object detection.
N2W7
Creators: name: Alyssah Clavien
Year: 2023
Subjects: subject: Mesoamerica
valueUri: https://core.tdar.org/browse/geographic-keyword/61/mesoamerica
subject: Basin of Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/3/basin-of-mexico
subject: Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/134/mexico
subject: Mexico (State / Territory)
valueUri: https://core.tdar.org/browse/geographic-keyword/326/mexico-state-territory
subject: United Mexican States (Country)
valueUri: https://core.tdar.org/browse/geographic-keyword/438/united-mexican-states-country
subject: Central Mexico, Teotihuacan Valley
valueUri: https://core.tdar.org/browse/geographic-keyword/7/central-mexico-teotihuacan-valley
subject: Central Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/135/central-mexico
subject: Teotihuacan Valley
valueUri: https://core.tdar.org/browse/geographic-keyword/154/teotihuacan-valley
subject: Teotihuacan
valueUri: https://core.tdar.org/browse/geographic-keyword/202/teotihuacan
subject: Valley of Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/44/valley-of-mexico
subject: Classic Period
valueUri: https://core.tdar.org/browse/temporal-keyword/125/classic-period
subject: Terminal Formative
valueUri: https://core.tdar.org/browse/temporal-keyword/67/terminal-formative
subject: Teotihuacan Period
valueUri: https://core.tdar.org/browse/temporal-keyword/7765/teotihuacan-period
subject: Early Classic
valueUri: https://core.tdar.org/browse/temporal-keyword/5560/early-classic
subject: Teotihuacan
valueUri: https://core.tdar.org/browse/culture-keyword/7527/teotihuacan
subject: Teotihuacano
valueUri: https://core.tdar.org/browse/culture-keyword/9224/teotihuacano
subject: Teotihuacan
valueUri: https://core.tdar.org/browse/site-name/92/teotihuacan
subject: Town / City
valueUri: https://core.tdar.org/browse/site-type/255/town-city
subject: Domestic Structure or Architectural Complex
valueUri: https://core.tdar.org/browse/site-type/251/domestic-structure-or-architectural-complex
subject: Settlements
valueUri: https://core.tdar.org/browse/site-type/252/settlements
subject: Systematic Survey
valueUri: https://core.tdar.org/browse/investigation-type/12/systematic-survey

description: Site Survey Form Scan for Square N2W7.
Additional file 1 of Simultaneous measurement of the size and methylation of chromosome 4qA-D4Z4 repeats in facioscapulohumeral muscular dystrophy by long-read sequencing
Creators: name: Hiramuki, Yosuke
name: Kure, Yuriko
name: Saito, Yoshihiko
name: Ogawa, Megumu
name: Ishikawa, Keiko
name: Mori-Yoshimura, Madoka
name: Oya, Yasushi
name: Takahashi, Yuji
name: Kim, Dae-Seong
name: Arai, Noriko
name: Mori, Chiaki
name: Matsumura, Tsuyoshi
name: Hamano, Tadanori
name: Nakamura, Kenichiro
name: Ikezoe, Koji
name: Hayashi, Shinichiro
name: Goto, Yuichi
name: Noguchi, Satoru
name: Nishino, Ichizo
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Fig. S1. Characteristic sequences detected by nCATS. Sequences of representative (A) 4qA- and (B) 10q-derived reads obtained from the indicated samples. The XapI/non-XapI and BlnI/non-BlnI sites in the most distal D4Z4 RU are shown. In Samples 8, 14, and 15, the XapI, XapI and non-BlnI, and non-XapI sites, respectively, in the second most distal D4Z4 RU are shown, due to the difficulty in identifying restriction sites. Table S1. Lengths of reads derived from the 4qA locus in each patient. Table S2. Lengths of reads derived from the 10q locus in each patient. Table S3. Methylation rates across all D4Z4 RUs at the 4qA and 10q loci.
Einstein-Yang-Mills-Lorentz black holes
Creators: name: Cembranos, Jose A. R.
name: Valcarcel, Jorge Gigante
Publisher: name: arXiv
Year: 2015
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Different black hole solutions of the coupled Einstein-Yang-Mills equations have been well known for a long time. They have attracted much attention from mathematicians and physicists since their discovery. In this work, we analyze black holes associated with the gauge Lorentz group. In particular, we study solutions which identify the gauge connection with the spin connection. This ansatz allows one to find exact solutions to the complete system of equations. By using this procedure, we show the equivalence between the Yang-Mills-Lorentz model in curved space-time and a particular set of extended gravitational theories.
description: 10 pages, 0 figures, minor changes, references added. It matches the version published in Eur. Phys. J. C
Nonparametric Estimation of Repeated Densities with Heterogeneous Sample Sizes
Creators: name: Qiu, Jiaming
name: Dai, Xiongtao
name: Zhu, Zhengyuan
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: We consider the estimation of densities in multiple subpopulations, where the available sample size in each subpopulation greatly varies. This problem occurs in epidemiology, for example, where different diseases may share similar pathogenic mechanism but differ in their prevalence. Without specifying a parametric form, our proposed method pools information from the population and estimate the density in each subpopulation in a data-driven fashion. Drawing from functional data analysis, low-dimensional approximating density families in the form of exponential families are constructed from the principal modes of variation in the log-densities. Subpopulation densities are subsequently fitted in the approximating families based on likelihood principles and shrinkage. The approximating families increase in their flexibility as the number of components increases and can approximate arbitrary infinite-dimensional densities. We also derive convergence results of the density estimates formed with discrete observations. The proposed methods are shown to be interpretable and efficient in simulation studies as well as applications to electronic medical record and rainfall data. Supplementary materials for this article are available online.
N2W2
Creators: name: Alyssah Clavien
Year: 2023
Subjects: subject: Mesoamerica
valueUri: https://core.tdar.org/browse/geographic-keyword/61/mesoamerica
subject: Basin of Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/3/basin-of-mexico
subject: Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/134/mexico
subject: Mexico (State / Territory)
valueUri: https://core.tdar.org/browse/geographic-keyword/326/mexico-state-territory
subject: United Mexican States (Country)
valueUri: https://core.tdar.org/browse/geographic-keyword/438/united-mexican-states-country
subject: Central Mexico, Teotihuacan Valley
valueUri: https://core.tdar.org/browse/geographic-keyword/7/central-mexico-teotihuacan-valley
subject: Central Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/135/central-mexico
subject: Teotihuacan Valley
valueUri: https://core.tdar.org/browse/geographic-keyword/154/teotihuacan-valley
subject: Teotihuacan
valueUri: https://core.tdar.org/browse/geographic-keyword/202/teotihuacan
subject: Valley of Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/44/valley-of-mexico
subject: Classic Period
valueUri: https://core.tdar.org/browse/temporal-keyword/125/classic-period
subject: Terminal Formative
valueUri: https://core.tdar.org/browse/temporal-keyword/67/terminal-formative
subject: Teotihuacan Period
valueUri: https://core.tdar.org/browse/temporal-keyword/7765/teotihuacan-period
subject: Early Classic
valueUri: https://core.tdar.org/browse/temporal-keyword/5560/early-classic
subject: Teotihuacan
valueUri: https://core.tdar.org/browse/culture-keyword/7527/teotihuacan
subject: Teotihuacano
valueUri: https://core.tdar.org/browse/culture-keyword/9224/teotihuacano
subject: Teotihuacan
valueUri: https://core.tdar.org/browse/site-name/92/teotihuacan
subject: Town / City
valueUri: https://core.tdar.org/browse/site-type/255/town-city
subject: Domestic Structure or Architectural Complex
valueUri: https://core.tdar.org/browse/site-type/251/domestic-structure-or-architectural-complex
subject: Settlements
valueUri: https://core.tdar.org/browse/site-type/252/settlements
subject: Systematic Survey
valueUri: https://core.tdar.org/browse/investigation-type/12/systematic-survey

description: Site Survey Form Scan for Square N2W2.
The Dynamics of Nigeria’s Oil and Gas Industry’s Environmental Regulation: Revealing/Storying Neglected Voices and Excluded Lives of Environmental Encounters and Affects
Creators: name: Bello, Olalekan
Publisher: name: University of Westminster
Year: 2021

description: The complex interaction of politics, power, economics and ‘subjectivisation’ of the human in natural resource exploration and production has demonstrated their impacts on the environment and ecosystem in anthropogenic and Anthropocenic dimensions. In Nigeria’s Niger Delta, these impacts have constantly materialised in the conflicts in the oil communities. This reality underscores the basis for this research’s narrative/analytical approach: the need to find a different way of narrating and dealing with the decades-long cataclysmic effects of oil and gas exploration on the people, environment, and ecosystem. The methodological approach adopted, autoethnography, will be justified through the view that within the gamut of qualitative methodology, autoethnography presents the most veritable avenue to reflexively create a forum for sharing with the world, the untold stories, and narratives of the people of the Niger Delta who exist in zones I refer to as zones of ‘exclusion’. From these zones, I engage with the voice of an imagined character, ‘O’, whose journey’s narratives as first order observer, rouse my own memory of a difference between system and environment. The narrative’s reality, viewed from systems theory, is a fluctuation between the immersion in, and distance from, the observed, observing, and self-observation, yet with the increasing realisation of the interconnectedness and interaction between man and his natural environment. This folds into an affect that is immanent on the human psyche, particularly in ecological terms. It also results in the search of transcendent justice that will achieve relational and social interaction mechanisms among all stakeholders to minimise and manage environmental incidents that may imply degradation and severe damage to the ecosystem, the socio-economic linkages to the environment, and human health and life.
Evolution of axis ratios from phase space dynamics of triaxial collapse
Creators: name: Nadkarni-Ghosh, Sharvari
name: Arya, Bhaskar
Publisher: name: arXiv
Year: 2015
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We investigate the evolution of axis ratios of triaxial haloes using the phase space description of triaxial collapse. In this formulation, the evolution of the triaxial ellipsoid is described in terms of the dynamics of eigenvalues of three important tensors: the Hessian of the gravitational potential, the tensor of velocity derivatives and the deformation tensor. The eigenvalues of the deformation tensor are directly related to the parameters that describe triaxiality, namely, the minor to major and intermediate to major axes ratios ($s$ and $q$) and the triaxiality parameter $T$. Using the phase space equations, we evolve the eigenvalues and examine the evolution of the PDF (probability distribution function) of the axes ratios as a function of mass scale and redshift for Gaussian initial conditions. We find that the ellipticity and prolateness increase with decreasing mass scale and decreasing redshift. These trends agree with previous analytic studies but differ from numerical simulations. However, the PDF of the scaled parameter ${\tilde q} = (q-s)/(1-s)$ follows a universal distribution over two decades in mass range and redshifts which is in qualitative agreement with the universality for conditional PDF reported in simulations. We further show using the phase space dynamics that, in fact, ${\tilde q}$ is a phase space invariant and is conserved individually for each halo. These results, demonstrate that the phase space analysis is a useful tool that provides a different perspective on the evolution of perturbations and can be applied to more sophisticated models in the future.
description: 10 pages, 5 figures, accepted in MNRAS
Characterization of lbpA, the structural gene for a lactoferrin receptor in Neisseria gonorrhoeae.
Creators: name: The University of North Carolina at Chapel Hill University Libraries
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 1995

description: Neisseria gonorrhoeae acquires iron (Fe) efficiently from lactoferrin (LF). A 103-kDa gonococcal outer membrane LF-binding protein (Lbp) was identified previously. We isolated the structural gene lbpA for Lbp1 by screening a gonococcal library for a clone that could repair an LF- receptor mutant. An mTnCm3 transposon insertion mutant of lbpA was unable to use LF-bound Fe for growth, unable to bind LF to whole cells, and unable to express Lbp1. The DNA sequence of lbpA predicted a protein that shared 94% identity with the meningococcal LF receptor protein, Lbp, and was closely related to Tbp1, one of the transferrin receptor proteins. Clinical isolates of gonococci are frequently unable to acquire Fe from LF, and LF- isolates do not have a functional LF receptor. The wild-type lbpA gene transformed most tested LF- clinical isolates to LF+, indicating that lbpA is defective in many clinical isolates.
N5W2
Creators: name: Alyssah Clavien
Year: 2023
Subjects: subject: Mesoamerica
valueUri: https://core.tdar.org/browse/geographic-keyword/61/mesoamerica
subject: Basin of Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/3/basin-of-mexico
subject: Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/134/mexico
subject: Mexico (State / Territory)
valueUri: https://core.tdar.org/browse/geographic-keyword/326/mexico-state-territory
subject: United Mexican States (Country)
valueUri: https://core.tdar.org/browse/geographic-keyword/438/united-mexican-states-country
subject: Central Mexico, Teotihuacan Valley
valueUri: https://core.tdar.org/browse/geographic-keyword/7/central-mexico-teotihuacan-valley
subject: Central Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/135/central-mexico
subject: Teotihuacan Valley
valueUri: https://core.tdar.org/browse/geographic-keyword/154/teotihuacan-valley
subject: Teotihuacan
valueUri: https://core.tdar.org/browse/geographic-keyword/202/teotihuacan
subject: Valley of Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/44/valley-of-mexico
subject: Classic Period
valueUri: https://core.tdar.org/browse/temporal-keyword/125/classic-period
subject: Terminal Formative
valueUri: https://core.tdar.org/browse/temporal-keyword/67/terminal-formative
subject: Teotihuacan Period
valueUri: https://core.tdar.org/browse/temporal-keyword/7765/teotihuacan-period
subject: Early Classic
valueUri: https://core.tdar.org/browse/temporal-keyword/5560/early-classic
subject: Teotihuacan
valueUri: https://core.tdar.org/browse/culture-keyword/7527/teotihuacan
subject: Teotihuacano
valueUri: https://core.tdar.org/browse/culture-keyword/9224/teotihuacano
subject: Teotihuacan
valueUri: https://core.tdar.org/browse/site-name/92/teotihuacan
subject: Town / City
valueUri: https://core.tdar.org/browse/site-type/255/town-city
subject: Domestic Structure or Architectural Complex
valueUri: https://core.tdar.org/browse/site-type/251/domestic-structure-or-architectural-complex
subject: Settlements
valueUri: https://core.tdar.org/browse/site-type/252/settlements
subject: Systematic Survey
valueUri: https://core.tdar.org/browse/investigation-type/12/systematic-survey

description: Site Survey Form Scan for Square N5W2.
Synthesis, crystal structure and DFT study of 4-amino-6-[[(1,3-dimethoxyphenyl)methyl]amino]-5-pyrimidine carbaldehyde
Creators: name: Shi, Yuan
name: Chen, Jun-Jiang
name: Yang, Zhi-Song
name: Li, Jin-Lan
name: Ma, Li-Xue
name: Zhou, Zhi-Xu
name: Huang, Zhu-Yan
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Plant Biology
subject: FOS: Biological sciences
subject: 60506 Virology

description: Aminopyrimidine is an important structure in medicinal chemistry. In this communication, we account the unreported synthesis reaction of the title compound. Its structure is characterized by 1H NMR, 13C NMR, MS and FT-IR. The single crystal of the compound was cultured in a suitable solvent system, and optimized by single crystal X-ray detection and density functional theory. Compared again, and the results showed that the diffraction value and the calculated value were the same. Density functional theory analyzes the frontier molecular orbital and molecular electrostatic potential of the compound to understand the physicochemical properties of the compound.
"example_code.py" of "Search for an anomalous excess of inclusive charged-current $\nu_e$ interactions in the MicroBooNE experiment using Wire-Cell reconstruction"
Creators: name: MicroBooNE Collaboration
Publisher: name: HEPData
Year: 2022

description: Example code for plotting unconstrained and constrained $\nu_e$CC FC
description: Data release for the first results from MicroBooNE's inclusive $\nu_e$CC search using Wire-Cell reconstruction, corresponding to information from arXiv:2110.13978. Attached is a python script which shows an example of how to use this data release to plot the unconstrained and constrained $\nu_e$CC FC data and predictions. Version 3 adds additional spectra and covariance matrices for 0p and Np exclusive $\nu_e$ and $\nu_\mu$ selections.
Extremal functions for Trudinger-Moser inequalities of Adimurthi-Druet type in dimension two
Creators: name: Yang, Yunyan
Publisher: name: arXiv
Year: 2015
Subjects: subject: Analysis of PDEs (math.AP)
subject: FOS: Mathematics
subject: 46E35, 58J05

description: Combining Carleson-Chang's result with blow-up analysis, we prove existence of extremal functions for certain Trudinger-Moser inequalities in dimension two. This kind of inequality was originally proposed by Adimurthi and O. Druet, extended by the author to high dimensional case and Riemannian surface case, generalized by C. Tintarev to wider cases including singular form and by M. de Souza and J. M. do Ó to the whole Euclidean space R^2. In addition to the Euclidean case, we also consider the Riemannian surface case. The results in the current paper complement that of L. Carleson and A. Chang, M. Struwe, M. Flucher, K. Lin, and Adimurthi-Druet, our previous ones, and part of C. Tintarev.
description: 28 pages
Characterization of the hgbA locus encoding a hemoglobin receptor from Haemophilus ducreyi.
Creators: name: The University of North Carolina at Chapel Hill University Libraries
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 1995

description: Haemophilus ducreyi can bind hemoglobin and use it as a source of heme, for which it has an obligate requirement. We previously identified and purified HgbA, a hemoglobin-binding outer membrane protein from H. ducreyi. In this report, we describe the molecular cloning, expression, DNA sequence, and mutagenesis of the structural gene for HgbA, hgbA. H. ducreyi and recombinant Escherichia coli expressing hgbA bound [125I]hemoglobin, establishing HgbA as a receptor. Insertions or deletions in the cloned hgbA gene abolished expression of HgbA and hemoglobin binding in E. coli. Mutagenesis of H. ducreyi by allelic exchange of insertions into hgbA abolished its ability to bind [125I]hemoglobin or utilize hemoglobin as a source of heme. The deduced protein sequence was similar to those of the TonB-dependent family of outer membrane receptors. The most similar member was HutA (heme receptor) from Vibrio cholerae. Tbp1 and Lbp1 (transferrin and lactoferrin receptors, respectively, from pathogenic Neisseria spp.) also showed very significant homology. Thus, by characterizing the hgbA locus, this work elucidates a potentially important role of HgbA in obtaining heme and/or iron from the host.
A speed and departure time optimization algorithm for the Pollution-Routing Problem
Creators: name: Kramer, Raphael
name: Maculan, Nelson
name: Subramanian, Anand
name: Vidal, Thibaut
Publisher: name: arXiv
Year: 2015
Subjects: subject: Data Structures and Algorithms (cs.DS)
subject: FOS: Computer and information sciences

description: We propose a new speed and departure time optimization algorithm for the Pollution-Routing Problem (PRP), which runs in quadratic time and returns a certified optimal schedule. This algorithm is embedded into an iterated local search-based metaheuristic to achieve a combined speed, scheduling and routing optimization. The start of the working day is set as a decision variable for individual routes, thus enabling a better assignment of human resources to required demands. Some routes that were evaluated as unprofitable can now appear as viable candidates later in the day, leading to a larger search space and further opportunities of distance optimization via better service consolidation. Extensive computational experiments on available PRP benchmark instances demonstrate the good performance of the algorithms. The flexible departure times from the depot contribute to reduce the operational costs by 8.36% on the considered instances.
description: 12 pages
S6W2
Creators: name: Alyssah Clavien
Year: 2023
Subjects: subject: Mesoamerica
valueUri: https://core.tdar.org/browse/geographic-keyword/61/mesoamerica
subject: Basin of Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/3/basin-of-mexico
subject: Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/134/mexico
subject: Mexico (State / Territory)
valueUri: https://core.tdar.org/browse/geographic-keyword/326/mexico-state-territory
subject: United Mexican States (Country)
valueUri: https://core.tdar.org/browse/geographic-keyword/438/united-mexican-states-country
subject: Central Mexico, Teotihuacan Valley
valueUri: https://core.tdar.org/browse/geographic-keyword/7/central-mexico-teotihuacan-valley
subject: Central Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/135/central-mexico
subject: Teotihuacan Valley
valueUri: https://core.tdar.org/browse/geographic-keyword/154/teotihuacan-valley
subject: Teotihuacan
valueUri: https://core.tdar.org/browse/geographic-keyword/202/teotihuacan
subject: Valley of Mexico
valueUri: https://core.tdar.org/browse/geographic-keyword/44/valley-of-mexico
subject: Classic Period
valueUri: https://core.tdar.org/browse/temporal-keyword/125/classic-period
subject: Terminal Formative
valueUri: https://core.tdar.org/browse/temporal-keyword/67/terminal-formative
subject: Teotihuacan Period
valueUri: https://core.tdar.org/browse/temporal-keyword/7765/teotihuacan-period
subject: Early Classic
valueUri: https://core.tdar.org/browse/temporal-keyword/5560/early-classic
subject: Teotihuacan
valueUri: https://core.tdar.org/browse/culture-keyword/7527/teotihuacan
subject: Teotihuacano
valueUri: https://core.tdar.org/browse/culture-keyword/9224/teotihuacano
subject: Teotihuacan
valueUri: https://core.tdar.org/browse/site-name/92/teotihuacan
subject: Town / City
valueUri: https://core.tdar.org/browse/site-type/255/town-city
subject: Domestic Structure or Architectural Complex
valueUri: https://core.tdar.org/browse/site-type/251/domestic-structure-or-architectural-complex
subject: Settlements
valueUri: https://core.tdar.org/browse/site-type/252/settlements
subject: Systematic Survey
valueUri: https://core.tdar.org/browse/investigation-type/12/systematic-survey

description: Site Survey Form Scan for Square S6W2.