cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 5: Table S7. of Thymosin beta 10 is a key regulator of tumorigenesis and metastasis and a novel serum marker in breast cancer
Creators: name: Zhang, Xin
name: Ren, Dong
name: Guo, Ling
name: Wang, Lan
name: Wu, Shu
name: Chuyong Lin
name: Liping Ye
name: Jinrong Zhu
name: Li, Jun
name: Libing Song
name: Huanxin Lin
name: Zhenyu He
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Cell Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Hematology
subject: Plant Biology
subject: Computational Biology

description: Clinicopathological characteristics of 1097 patients with breast cancer for analysis in TCGA. (PDF 62 kb)
Unemaeea nathalieae Tedersoo 2024, sp. nov.
Creators: name: Tedersoo, Leho
name: Magurno, Franco
name: Alkahtani, Saad
name: Mikryukov, Vladimir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Tracheophyta
Magnoliopsida
Unemaeeales
Unemaeeaceae
Unemaeea
Unemaeea nathalieae

description: Unemaeea nathalieae Tedersoo sp. nov.
Diagnosis.
Separation from other species of Unemaeea based on the ITS region (5.8 S positions 122–151 gtcagtgtttgccacggagtatgccggctt; no mismatch allowed) and from other species of Endogonomycetes based on LSU (positions 694–723 gggcttgtcatggcagagggacacgtcgta; no mismatch allowed) as indicated in Fig. 17.
Type.
Soil eDNA sample TUE 100213 (holotype); eDNA sequence EUK 1630871 (lectotype); GSMc plot G 3318, marshland (soil sample TUE 000213) in Unemäe, Estonia, 58.28253 ° N, 22.46296 ° E.
Description.
Other sequences: EUK 1635887 – EUK 1635890 (type locality) and EUK 1213720 (FunAqua sample W 0581 s, river sediment in Floresti, Romania, 46.75472 ° N, 23.49923 ° E).
Etymology.
Unemäe (Estonian) refers to the type locality; and Nathalie (English) refers to the first name of Nathalie J. A. Curlevski who collected the first materials belonging to this genus.
Notes.
The end of 5.8 S and start of LSU are strongly diverged compared with other species of Unemaeea and Endogonomycetes. As no other confamilial LSU sequences are available, the diagnostic positions are compared against the most divergent, unalignable part across Endogonomycetes. Found in anoxic soil in Estonia and Romania, with ITS sequences displaying up to 4 % differences.
description: Published as part of Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir, 2024, Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes), pp. 249-271 in MycoKeys 107 on pages 249-271, DOI: 10.3897/mycokeys.107.125549
Additional file 1: of Consolidating emerging evidence surrounding HIVST and HIVSS: a rapid systematic mapping protocol
Creators: name: T. Witzel
name: Weatherburn, Peter
name: Burns, Fiona
name: Johnson, Cheryl
name: Figueroa, Carmen
name: Rodger, Alison
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Infectious Diseases
subject: FOS: Health sciences

description: PRISMA checklist. (PDF 130 kb)
Additional file 7: Figure S2. of Thymosin beta 10 is a key regulator of tumorigenesis and metastasis and a novel serum marker in breast cancer
Creators: name: Zhang, Xin
name: Ren, Dong
name: Guo, Ling
name: Wang, Lan
name: Wu, Shu
name: Chuyong Lin
name: Liping Ye
name: Jinrong Zhu
name: Li, Jun
name: Libing Song
name: Huanxin Lin
name: Zhenyu He
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences

description: High TMSB10 expression in breast cancer tissue samples correlates with poor patient survival and distant metastasis-free survival. a Number of different staining indices of IHC for all 253 patients with breast cancer. b and c Overall survival and distant metastasis-free survival curves from the TCGA profiles for all 1094 patients with breast cancer stratified by high and low expression of TMSB10. d-f Overall survival, relapse-free survival and distant metastasis-free survival curves from the Kaplan-Meier Plotter (BC) profiles for patients with breast cancer stratified by high and low expression of TMSB10. g Kaplan-Meier relapse-free survival curves for all patients with breast cancer stratified by high and low expression of TMSB10 without systemic treatment. h Kaplan-Meier relapse-free survival curves for all patients with breast cancer stratified by high and low expression of TMSB10 after endocrine therapy. i Kaplan-Meier relapse-free survival curves for all patients with breast cancer stratified by high and low expression of TMSB10 after chemotherapy. (PDF 360 kb)
Helicoconis
Creators: name: Vidlička, Ľubomír
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Neuroptera
Coniopterygidae
Helicoconis

description: Key to the Palaearctic species of the subgenus Helicoconis
1 Styli deeply bifurcated, branches closely abreast............................................................. 2
- Styli simple, with inner, distinctly elongated apophyses....................................................... 3
2 Parameres short, subapically with a short latero-ventral hook (Fig. 2 b)...................... H. lutea (Wallengren, 1871)
- Parameres very long, deeply bifurcated, branches equally long............................. H. hirtinervis Tjeder, 1960
3 Apophysis narrow, markedly longer than stylus.............................................................. 4
- Apophysis short, about a long as stylus (Fig. 2 a)................................................ H. tatricus sp. n.
4 Caudal margin of hypandrium with distinct dentiform protrusions..................... H. sengonca Rausch et al., 1978
- Caudal margin of hypandrium even, without protrusions....................................................... 5
5 Apophysis distinctly set off from stylus.................................................... H. eglini Ohm, 1965
- Apophysis separate but runs parallel with stylus................................... H. premnata Rausch et al., 1981
description: Published as part of Vidlička, Ľubomír, 2014, Description of Helicoconis tatricus sp. n. (Neuroptera, Coniopterygidae) from Slovakia (Central Europe) and key for determination of all Palaearctic species of subgenus Helicoconis, pp. 438-444 in Zootaxa 3893 (3) on page 442, DOI: 10.11646/zootaxa.3893.3.8, http://zenodo.org/record/227010
Antecedents of the child behavior checklist-dysregulation profile in children born extremely preterm
Creators: name: Wood, M.E
name: Leviton, A.
name: O'Shea, M.
name: Allred, E.N.
name: Frazier, J.A
name: Ware, J
name: Joseph, R.M
name: Kuban, K.C
Publisher: name: Elsevier Inc.
Year: 2015

description: Objective Extremely preterm newborns are at heightened risk for emotional and behavioral dysregulation later in childhood. Our goal was to systematically evaluate the antenatal and early postnatal antecedents that might mediate the association between extreme preterm birth and emotional and behavioral dysregulation at age 2 years (corrected age). Method In a multi-site prospective study, the parents of 826 infants born before 28 weeks gestation completed a Child Behavior Checklist (CBCL) when the child was 2 years corrected age. We compared the maternal, pregnancy, placenta, delivery, and newborn characteristics, as well as early postnatal characteristics and exposures of those who satisfied criteria for the CBCL-Dysregulation Profile (CBCL-DP) to those of their peers. We then used time-oriented logistic regression models, starting first with antenatal variables that distinguished children with the CBCL-DP profile from their peers, and then added the distinguishing postnatal variables. Results Approximately 9% of the children had a CBCL-DP. In the time-oriented logistic regression model with antenatal variables only, low maternal education achievement, passive smoking, and recovery of Mycoplasma from the placenta were associated with increased risk, whereas histologic chorioamnionitis was associated with reduced risk. None of the postnatal variables added statistically significant discriminating information. Conclusion Very preterm newborns who later manifest the CBCL-DP at age 2 years differ in multiple ways from their preterm peers who do not develop the CBCL-DP, raising the possibility that potentially modifiable antenatal and early postnatal phenomena contribute to the risk of developing emotional and behavioral dysregulation.
Injective ellipticity, cancelling operators, and endpoint Gagliardo-Nirenberg-Sobolev inequalities for vector fields
Creators: name: Van Schaftingen, Jean
Publisher: name: arXiv
Year: 2023
Subjects: subject: Analysis of PDEs (math.AP)
subject: Classical Analysis and ODEs (math.CA)
subject: Functional Analysis (math.FA)
subject: FOS: Mathematics
subject: 35A23 (Primary) 26D15, 35E05, 42B30, 42B35, 46E35 (Secondary)

description: Although Ornstein's nonestimate entails the impossibility to control in general all the $L^1$-norm of derivatives of a function by the $L^1$-norm of a constant coefficient homogeneous vector differential operator, the corresponding endpoint Sobolev inequality has been known to hold in many cases: the gradient of scalar functions (Gagliardo and Nirenberg), the deformation operator (Korn-Sobolev inequality by M.J. Strauss), and the Hodge complex (Bourgain and Brezis). The class of differential operators for which estimates holds can be characterized by a cancelling condition. The proof of the estimates rely on a duality estimate for $L^1$-vector fields lying in the kernel of a cocancelling differential operator, combined with classical linear algebra and harmonic analysis techniques. This characterization unifies classes of known Sobolev inequalities and extends to fractional Sobolev and Hardy inequalities. A similar weaker condition introduced by Raiţă characterizes the operators for which there is an $L^\infty$-estimate on lower-order derivatives.
description: 48 pages, lecture notes for the CIME summer school "Geometric and analytic aspects of functional variational principles'', June 27 - July 1, 2022, final corrections
MOESM1 of The T160A hemagglutinin substitution affects not only receptor binding property but also transmissibility of H5N1 clade 2.3.4 avian influenza virus in guinea pigs
Creators: name: Gu, Min
name: Qunhui Li
name: Ruyi Gao
name: Dongchang He
name: Yunpeng Xu
name: Haixu Xu
name: Lijun Xu
name: Xiaoquan Wang
name: Hu, Jiao
name: Xiaowen Liu
name: Shunlin Hu
name: Daxin Peng
name: Xinan Jiao
name: Xiufan Liu
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology
subject: Computational Biology

description: Additional file 1. Cartoon representation of the HA structure of A/mallard/Huadong/S/2005. The model was generated by automated homology modeling using SWISS-MODEL based on the template of PDB (ID: 4jul). The receptor-binding domain (RBD) constituting with amino acids 188-190, 134-138, 221-228, 98,153 and 183 of HA1 (H3 numbering), according to reference [9], were colored yellow for clarity. The six divergent amino acids discussed in the text were colored gray, of which simultaneously located in RBD were labeled orange. The six specific substitutions were shown as sticks in the magnified side pictures, respectively. ‘‘K’’ is lysine, ‘‘R’’ is arginine, ‘‘T’’ is threonine, “Q” isglutamine, ‘‘S’’ is serine, ‘‘N’’ is asparagine, ‘‘H’’ is histidine and ‘‘A’’ is alanine.
Autosomal short tandem repeat genetic variation of the Basques in Spain
Creators: name: Crawford, M.H
name: Deka, R
name: Sun, G
name: Young, K.L
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2011

description: Aim: To examine population genetic structure and hypotheses of the origin of the modern Basque population in Spain using autosomal short tandem repeat (STR) data from individuals living in 27 mountain villages in the provinces of Alava, Vizcaya, Guipuzcoa, and Navarre, by comparing Basque autosomal STR variation with that of neighboring populations in Europe, as well as proposed ancestral populations in North Africa and the Caucasus. Methods: Allele frequencies for 9 autosomal STR loci (D3S1358, D5S818, D7S820, D8S1179, D13S317, D18S51, D21S11, FGA, and vWA) and several population genetic parameters were determined for the 4 provinces in the Basque region of Spain (n = 377). Heterozygosity within the Basque population was measured using a locus-by-locus analysis of molecular variance. Relationships between the Basques and other populations were examined using a multidimensional scaling (MDS) plot of Shriver's D SW distance matrix. Results Heterozygosity levels in the Basque provinces were on the low end of the European distribution (0.805-0.812). The MDS plot of genetic distances revealed that the Basques differed from both the Caucasian and North African populations with respect to autosomal STR variation. Conclusions Autosomal STR analysis does not support the hypotheses of a recent common ancestor between the Basques and populations either from the Caucasus or North Africa.
Bifiguratales Tedersoo 2024, ord. nov.
Creators: name: Tedersoo, Leho
name: Magurno, Franco
name: Alkahtani, Saad
name: Mikryukov, Vladimir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Bifiguratales

description: Bifiguratales Tedersoo ord. nov.
Type family.
Bifigurataceae Tedersoo.
Description.
Covers the monophyletic group in Endogonomycetes (Fig. 2). Cultured mycelium filamentous, aseptate, coenocytic, 2 μm diam., mucose in appearance, commonly producing budding yeast-like cells; chlamydospores intercalary, 5–10 μm diam., forming on hyphal tips. Phylogenetically delimited by the least inclusive clade covering sequence accessions HM 123225, EUK 1104879, KF 568171 and KF 567389.
Notes.
Comprised of a single family Bifigurataceae. Order description is adapted from Torres-Cruz et al. (2017).
description: Published as part of Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir, 2024, Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes), pp. 249-271 in MycoKeys 107 on pages 249-271, DOI: 10.3897/mycokeys.107.125549
Additional file 3 of Characterization and function analysis of a novel gene, Hc-maoc-1, in the parasitic nematode Haemonochus contortus
Creators: name: Haojie Ding
name: Hengzhi Shi
name: Shi, Yu
name: Xiaolu Guo
name: Xiuping Zheng
name: Xueqiu Chen
name: Qianjin Zhou
name: Yang, Yi
name: Aifang Du
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Figure S2. Western blot: Hc-MAOC-1 polyclonal antibody recognized the whole worm protein of H. contortus. (PDF 374Â kb)
Many-body delocalization from embedded thermal inclusion
Creators: name: Peacock, J. Clayton
name: Sels, Dries
Publisher: name: arXiv
Year: 2023
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We numerically study quantum avalanches in one-dimensional disordered spin systems by attaching two XXZ spin chains. One chain has low disorder representing a rare Griffith's region, or thermal inclusion, and the second has larger disorder, i.e., disorder larger than the observed finite-size crossover. Comparing dynamics of this system to identical systems with uniformly large disorder, we find evidence for exponentially slow thermalization (in disorder) within the many-body localized regime when the rare region is present. We observe a decay of the spin imbalance in the bulk of the large disorder region that persists to long times ($\sim10^{4}$) and find a universal behavior of the spectral function.
Additional file 3 of Characterization and function analysis of a novel gene, Hc-maoc-1, in the parasitic nematode Haemonochus contortus
Creators: name: Haojie Ding
name: Hengzhi Shi
name: Shi, Yu
name: Xiaolu Guo
name: Xiuping Zheng
name: Xueqiu Chen
name: Qianjin Zhou
name: Yang, Yi
name: Aifang Du
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Figure S2. Western blot: Hc-MAOC-1 polyclonal antibody recognized the whole worm protein of H. contortus. (PDF 374Â kb)
American Indian/Alaska native willingness to provide biological samples for research purposes
Creators: name: Young, K.L
name: Nazir, N
name: Greiner, K.A
name: Brown, T
name: Williams, C
name: Choi, W.S
name: Filippi, M.K
name: Daley, C.M.
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2012

description: This article examines the willingness of American Indian/Alaska Natives (AI/AN) to provide biological samples for research purposes. Prior cases of abuse and misuse of individuals, materials, and data highlight ethical research concerns. Investigators may be hesitant to engage AI/ANs in research projects. We conducted a survey of AI/ANs in the central plains region of the US over 1 year. This convenience sample completed a series of questions on biological samples and research. Survey results (N = 998) indicate that 70.15% of AI/ANs would be willing to provide saliva/spit for a specific study with the proper consent and control of samples. In conclusion, researchers should find ways to work with and for AI/ANs, assuring participant input in the research process.
MOESM2 of Effect of RAGE gene polymorphisms and circulating sRAGE levels on susceptibility to gastric cancer: a caseâ  control study
Creators: name: Taijie Li
name: Weijuan Qin
name: Yanqiong Liu
name: Li, Shan
name: Qin, Xue
name: Zhiming Liu
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer

description: Additional file 2. The genotype distributions of RAGE polymorphisms estimated by smoking status.
Bifigurataceae Tedersoo 2024, fam. nov.
Creators: name: Tedersoo, Leho
name: Magurno, Franco
name: Alkahtani, Saad
name: Mikryukov, Vladimir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Bifiguratales
Bifigurataceae

description: Bifigurataceae Tedersoo fam. nov.
Type genus.
Bifiguratus T. J. Torres-Cruz & A. Porras-Alfaro.
Description.
Cultured mycelium filamentous, aseptate, coenocytic, 2 μm diam., mucose in appearance, commonly producing budding yeast-like cells; chlamydospores intercalary, 5–10 μm diam., forming on hyphal tips. Phylogenetically delimited by the least inclusive clade covering sequence accessions HM 123225, EUK 1104879, KF 568171 and KF 567389.
Notes.
Comprised of a single genus Bifiguratus that is commonly found in soil and occasionally in roots of non- AM plants. No sexual structures have been revealed. Family description is adapted from Torres-Cruz et al. (2017).
description: Published as part of Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir, 2024, Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes), pp. 249-271 in MycoKeys 107 on pages 249-271, DOI: 10.3897/mycokeys.107.125549
Sonographic and genetic findings in a case of asymptomatic spontaneous uterine rupture
Creators: name: Fry, R.C
name: Young, K
name: Manuck, T.A
name: Sun, S.V
Publisher: name: John Wiley and Sons Ltd
Year: 2022

description: An asymptomatic 25-year-old G4P0120 with history significant for cervical insufficiency and classical cesarean delivery 12.5 months prior to conception underwent routine transabdominal ultrasound at 36w4d; umbilical cord was found to be protruding into a fluid-filled pouch extruding from the lower uterine segment. During emergent cesarean delivery, a full-thickness uterine rupture was confirmed; the fetal cranium and umbilical cord were extrauterine. Maternal genotype revealed greater than expected minor allele frequencies for several collagen genes. Maternal gene expression (mRNA) and corresponding microRNA expression of these collagen genes differed several-fold between her G3 (cervical insufficiency, classical cesarean delivery) and G4 (uterine rupture) pregnancies. This case highlights that (1) cervical insufficiency, poor myometrial wound healing, and uterine rupture may co-occur and pathophysiology may be related to collagen abnormalities and (2) asymptomatic uterine rupture can be detected sonographically, even in late pregnancy. Clinicians should remain vigilant for the possibility of uterine rupture, particularly among high-risk patients.
Densosporales Tedersoo 2024, ord. nov.
Creators: name: Tedersoo, Leho
name: Magurno, Franco
name: Alkahtani, Saad
name: Mikryukov, Vladimir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Densosporales

description: Densosporales Tedersoo ord. nov.
Type family.
Densosporaceae Desirò, M. E. Sm., Bidartondo, Trappe & Bonito.
Description.
Densosporales is defined as a monophyletic group in Endogonomycetes (Fig. 2, Suppl. material 3) that corresponds to Densosporaceae sensu Desiro et al. (2017). Covers Densosporacae and Planticonsortiaceae and the least inclusive clade with sequence accessions UDB 028692, EUK 1104889, EUK 1104816 and EUK 1601509 (Suppl. material 3).
Notes.
Densosporales harbours roughly one half of the Endogonomycetes based on LSU data. It comprises Densosporacae, Planticonsortiaceae and 16 additional family-level groups collectively covering> 200 species. LSU has much greater phylogenetic resolution compared with SSU (Suppl. materials 3, 4), and the potential utility of the ITS region seems to vary greatly by family. Many more ITS - LSU sequences are needed to understand family- and genus-level composition of Densosporales.
description: Published as part of Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir, 2024, Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes), pp. 249-271 in MycoKeys 107 on pages 249-271, DOI: 10.3897/mycokeys.107.125549
Additional file 2: of Consolidating emerging evidence surrounding HIVST and HIVSS: a rapid systematic mapping protocol
Creators: name: T. Witzel
name: Weatherburn, Peter
name: Burns, Fiona
name: Johnson, Cheryl
name: Figueroa, Carmen
name: Rodger, Alison
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Search strategy. Searches updated after peer review. (DOCX 19 kb)
Additional file 1: Table S1. of Characterization and function analysis of a novel gene, Hc-maoc-1, in the parasitic nematode Haemonochus contortus
Creators: name: Haojie Ding
name: Hengzhi Shi
name: Shi, Yu
name: Xiaolu Guo
name: Xiuping Zheng
name: Xueqiu Chen
name: Qianjin Zhou
name: Yang, Yi
name: Aifang Du
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: FOS: Biological sciences

description: Primers used in all experiments. (DOCX 15Â kb)
Paternal genetic history of the basque population of Spain
Creators: name: Sun, G
name: Crawford, M.H
name: Young, K.L
name: Deka, R
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2011

description: This study examines the genetic variation in Basque Y chromosome lineages using data on 12 Y-short tandem repeat (STR) loci in a sample of 158 males from four Basque provinces of Spain (Alava, Vizcaya, Guipuzcoa, and Navarre). As reported in previous studies, the Basques are characterized by high frequencies of haplogroup R1b (83%). AMOVA analysis demonstrates genetic homogeneity, with a small but significant amount of genetic structure between provinces (Y-short tandem repeat loci STRs: 1.71%, p = 0.0369). Gene and haplotype diversity levels in the Basque population are on the low end of the European distribution (gene diversity: 0.4268; haplotype diversity: 0.9421). Post-Neolithic contribution to the paternal Basque gene pool was estimated by measuring the proportion of those haplogroups with a Time to Most Recent Common Ancestor (TMRCA) previously dated either prior (R1b, I2a2) or subsequent to (E1b1b, G2a, J2a) the Neolithic. Based on these estimates, the Basque provinces show varying degrees of post-Neolithic contribution in the paternal lineages (10.9% in the combined sample).
MOESM1 of Patients with ANCA-associated vasculitis admitted to the intensive care unit with acute vasculitis manifestations: a retrospective and comparative multicentric study
Creators: name: Demiselle, Julien
name: Auchabie, Johann
name: Beloncle, François
name: Gatault, Philippe
name: Grangé, Steven
name: Cheyron, Damien
name: Dellamonica, Jean
name: Boyer, Sonia
name: Beauport, Dimitri
name: Piquilloud, Lise
name: Letheulle, Julien
name: Guitton, Christophe
name: Chudeau, Nicolas
name: Geri, Guillaume
name: Fourrier, François
name: Robert, René
name: Guérot, Emmanuel
name: Boisramé-Helms, Julie
name: Galichon, Pierre
name: Pierre-François Dequin
name: Lautrette, Alexandre
name: Pierre-Edouard Bollaert
name: Meziani, Ferhat
name: Guillevin, Loïc
name: Lerolle, Nicolas
name: Jean-François Augusto
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 1: Table 1. Infectious events in ICU-AAV group.
Lemyra (Thyrgorina) collarlis N. Singh, Kirti & Kaleka 2016
Creators: name: Singh, Navneet
name: Joshi, Rahul
name: Kirti, Jagbir Singh
name: Bisht, Santosh Singh
name: Param, Harsimranjeet Singh
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Arctiidae
Lemyra
Lemyra collarlis

description: 61. Lemyra (Thyrgorina) collarlis N. Singh, Kirti & Kaleka, 2016: 15
= Thanatarctia collarlis Singh & Singh, 1998: 147, nomen nudum
Type locality: Jatinga, Assam, India
Distribution: Assam (Jatinga) (Kirti & Singh 2016).
description: Published as part of Singh, Navneet, Joshi, Rahul, Kirti, Jagbir Singh, Bisht, Santosh Singh & Param, Harsimranjeet Singh, 2021, A catalogue of Indian Arctiinae (Erebidae, Lepidoptera), pp. 1-118 in Zootaxa 5058 (1) on page 25, DOI: 10.11646/zootaxa.5058.1.1, http://zenodo.org/record/5602576
Additional file 1: Table S1. of Characterization and function analysis of a novel gene, Hc-maoc-1, in the parasitic nematode Haemonochus contortus
Creators: name: Haojie Ding
name: Hengzhi Shi
name: Shi, Yu
name: Xiaolu Guo
name: Xiuping Zheng
name: Xueqiu Chen
name: Qianjin Zhou
name: Yang, Yi
name: Aifang Du
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Primers used in all experiments. (DOCX 15Â kb)
Additional file 3: Table S3. of The association of early life socioeconomic conditions with prediabetes and type 2 diabetes: results from the Maastricht study
Creators: name: Derks, Ivonne
name: Koster, Annemarie
name: Schram, Miranda
name: Stehouwer, Coen
name: Dagnelie, Pieter
name: Groffen, Danielle
name: Bosma, Hans
Publisher: name: Figshare
Year: 2017
Subjects: subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy
subject: 60506 Virology

description: Odds ratios for newly diagnosed diabetes by early life socioeconomic conditions. (PDF 146 kb)
Genetic architecture of a small, recently aggregated aleut population: Bering Island, Russia
Creators: name: Young, K.L
name: Sun, G
name: Spitsyn, V
name: Rubicz, R
name: Crawford, M.H
name: Deka, R
name: Zlojutro, M
Publisher: name: Wayne State University Press
Year: 2010

description: The fishing community of Bering Island, located in the Russian Commander Islands off the Kamchatka Peninsula, was originally founded by a small number of Russian soldiers and merchants, along with Aleuts forcibly relocated from the western region of the Aleutian archipelago. The purpose of this study is to characterize the genetic variation of Bering Island inhabitants for autosomal, mitochondrial, and Y-chromosome DNA and classic genetic markers and to investigate the genetic impact of the 19th-century founding and subsequent demographic events on this heterogeneous community. Our results show a loss of diversity among maternal lineages in the Bering Aleut population, with fixation of mtDNA haplogroup D, as revealed by median-joining network analysis and mismatch differences. Conversely, paternal haplotypes exhibit an increase in diversity and the presence of a substantial number of non-Native lineages. Admixture results, based on autosomal STR data, indicate that parental contributions to the mixed Aleut population of Bering are approximately 60% Aleut and 40% Russian. Classic genetic markers show affinities between the Bering Island Aleuts and the other historically founded Aleut communities of St. Paul and St. George in the Pribilof Islands, Alaska. This study demonstrates that the opposing evolutionary forces of genetic drift and gene flow acted on the maternal and paternal lineages, respectively, to shape the genetic structure of the present-day inhabitants of Bering Island.
MOESM1 of Effect of RAGE gene polymorphisms and circulating sRAGE levels on susceptibility to gastric cancer: a caseâ  control study
Creators: name: Taijie Li
name: Weijuan Qin
name: Yanqiong Liu
name: Li, Shan
name: Qin, Xue
name: Zhiming Liu
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer

description: Additional file 1. The genotype distributions of RAGE polymorphisms estimated by gender.
Densosporaceae Desiro, M. E. Sm., Bidartondo, Trappe & Bonito
Creators: name: Tedersoo, Leho
name: Magurno, Franco
name: Alkahtani, Saad
name: Mikryukov, Vladimir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Mucoromycota
Endogonomycetes
Densosporales
Densosporaceae

description: Densosporaceae Desirò, M. E. Sm., Bidartondo, Trappe & Bonito, emend. Tedersoo
Type genus.
Densospora McGee.
Description.
Phylogenetic diagnosis as in Desiro et al. (2017), but includes a more limited phylogenetic group - the least inclusive clade comprised of Densospora spp. (accessions JF 414167 and UDB 28692), Sphaerocreas pubescens (accession LC 107618) and accession EUK 1601029 (Suppl. material 3).
Notes.
Based on SSU phylogeny (Suppl. material 4), one or both of the genera Densospora and Sphaerocreas are paraphyletic, and their relationships require further research. Most species in both genera remain to be sequenced, including D. tubiformis (P. A. Tandy) McGee - the type species of Densospora.
description: Published as part of Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir, 2024, Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes), pp. 249-271 in MycoKeys 107 on pages 249-271, DOI: 10.3897/mycokeys.107.125549
Personality Recognition by Modelling Person-specific Cognitive Processes using Graph Representation.
Creators: name: Shao, Zilong
name: Song, Siyang
name: Jaiswal, Shashank
name: Shen, Linlin
name: Valstar, Michel F
name: Gunes, Hatice
Publisher: name: ACM
Year: 2021

description: Recent research shows that in dyadic and group interactions individuals’ nonverbal behaviours are influenced by the behaviours of their conversational partner(s). Therefore, in this work we hypothesise that during a dyadic interaction, the target subject's facial reactions are driven by two main factors: (i) their internal (person-specific) cognition, and (ii) the externalised nonverbal behaviours of their conversational partner. Subsequently, our novel proposition is to simulate and represent the target subject’s (i.e., the listener) cognitive process in the form of a person-specific CNN architecture whose input is the audio-visual non-verbal cues displayed by the conversational partner (i.e., the speaker), and the output is the target subject’s (i.e., the listener) facial reactions. We then undertake a search for the optimal CNN architecture whose results are used to create a person-specific graph representation for recognising the target subject’s personality. The graph representation, fortified with a novel end-to-end edge feature learning strategy, helps with retaining both the unique parameters of the person-specific CNN and the geometrical relationship between its layers. Consequently, the proposed approach is the first work that aims to recognize the true (self-reported) personality of a target subject (i.e., the listener) from the learned simulation of their cognitive process (i.e., parameters of the person-specific CNN). The experimental results show that the CNN architectures are well associated with target subjects' personality traits and the proposed approach clearly outperforms multiple existing approaches that predict personality directly from non-verbal behaviours. In light of these findings, this work opens up a new avenue of research for predicting and recognizing socio-emotional phenomena (personality, affect, engagement etc.) from simulations of person-specific cognitive processes.
MOESM3 of Effect of RAGE gene polymorphisms and circulating sRAGE levels on susceptibility to gastric cancer: a caseâ  control study
Creators: name: Taijie Li
name: Weijuan Qin
name: Yanqiong Liu
name: Li, Shan
name: Qin, Xue
name: Zhiming Liu
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Additional file 3. The genotype distributions of RAGE polymorphisms estimated by drinking status.
Degenerate Fourier transform associated with the Sturm-Liouville operator
Creators: name: Gorshkov, Aleksei
Publisher: name: arXiv
Year: 2023
Subjects: subject: Analysis of PDEs (math.AP)
subject: Functional Analysis (math.FA)
subject: FOS: Mathematics
subject: 42A38 (Primary), 42C30, 34B24 (Secondary)

description: Most of the known Fourier transforms associated with the equations of mathematical physics have a trivial kernel, and an inversion formula as well as the Parseval equality are fulfilled. In other words, the system of the eigenfunctions involved in the definition of the integral transform is complete. Here we will study Fourier transform associated with the differential operator, which in addition to the continuous part of the spectrum that defines this transform, may contain a set of eigenfunctions. These functions become the elements of the kernel of Fourier transform.
Classification of the conjugacy classes of $\widetilde{\mathrm{SL}}(2,\mathbb{R})$
Creators: name: Táfula, Christian
Publisher: name: arXiv
Year: 2023
Subjects: subject: Group Theory (math.GR)
subject: FOS: Mathematics
subject: 20E45, 22E46

description: In this note, we classify the conjugacy classes of $\widetilde{\mathrm{SL}}_2(\mathbb{R})$, the universal covering group of $\mathrm{PSL}_2(\mathbb{R})$. For any non-central element $α\in \widetilde{\mathrm{SL}}_2(\mathbb{R})$, we show that its conjugacy class may be determined by three invariants:
 (i) Trace: the trace (valued in the set of positive real numbers $\mathbb{R}_{+}$) of its image $\overlineα$ in $\mathrm{PSL}_2(\mathbb{R})$;
 (ii) Direction type: the sign behavior of the induced self-homeomorphism of $\mathbb{R}$ determined by the lifting $\widetilde{\mathrm{SL}}_2(\mathbb{R}) \curvearrowright \mathbb{R}$ of the action $\mathrm{PSL}_2(\mathbb{R}) \curvearrowright \mathbb{S}^{1}$;
 (iii) The function $\ell^{\sharp}$: a conjugacy invariant length function introduced by S. Mochizuki [Res. Math. Sci. 3 (2016), 3:6].
description: 12 pages, 3 figures. Accepted version
Scalable and High-Quality Neural Implicit Representation for 3D Reconstruction
Creators: name: Yang, Leyuan
name: Deng, Bailin
name: Zhang, Juyong
Publisher: name: arXiv
Year: 2025
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Graphics (cs.GR)
subject: FOS: Computer and information sciences

description: Various SDF-based neural implicit surface reconstruction methods have been proposed recently, and have demonstrated remarkable modeling capabilities. However, due to the global nature and limited representation ability of a single network, existing methods still suffer from many drawbacks, such as limited accuracy and scale of the reconstruction. In this paper, we propose a versatile, scalable and high-quality neural implicit representation to address these issues. We integrate a divide-and-conquer approach into the neural SDF-based reconstruction. Specifically, we model the object or scene as a fusion of multiple independent local neural SDFs with overlapping regions. The construction of our representation involves three key steps: (1) constructing the distribution and overlap relationship of the local radiance fields based on object structure or data distribution, (2) relative pose registration for adjacent local SDFs, and (3) SDF blending. Thanks to the independent representation of each local region, our approach can not only achieve high-fidelity surface reconstruction, but also enable scalable scene reconstruction. Extensive experimental results demonstrate the effectiveness and practicality of our proposed method.
Who Is Benefiting from Your Fitness Data? A Privacy Analysis of Smartwatches
Creators: name: Monteith, J
name: Shapcott, O
name: Talas, A
name: Dahiya, P
Publisher: name: Springer Nature Switzerland
Year: 2023
Subjects: 46 Information and Computing Sciences
4604 Cybersecurity and Privacy
Generic health relevance

description: Over the last decade, smartwatches have become prevalent, and the market is estimated to grow, reaching a value of $80.1 billion by 2028 [1]. The increase in the market share was primarily due to the attractive personal features related to fitness, which could fulfil the three basic psychological needs: autonomy, competence and relatedness [2]. As a result, user uptake increased rapidly. However, fitness data is also very personal. While many users share their fitness data, they do not want it to be used or shared without their consent. Data protection is required by law, but if users need to learn how their data is used and whether or not the operations follow the privacy policies, how do they know that their data is protected? Our research analyses the agreements between each party involved around the end users of smartwatches and looks at how the smartwatch vendors and application developers handle data. As our case studies, we analyse how privacy could be violated using four of the biggest market share holders, namely Apple, Fitbit, Samsung and Garmin.
Additional file 2: Figure S1. of Characterization and function analysis of a novel gene, Hc-maoc-1, in the parasitic nematode Haemonochus contortus
Creators: name: Haojie Ding
name: Hengzhi Shi
name: Shi, Yu
name: Xiaolu Guo
name: Xiuping Zheng
name: Xueqiu Chen
name: Qianjin Zhou
name: Yang, Yi
name: Aifang Du
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: a Hc-maoc-1-pET30a transformed Into E. coli (BL21) and induced in 37 °C in different temperature. Lane M: Marker; Lane 1: 0 h; Lane 2: 2 h; 3: 4 h; Lane 4: 6 h; Lane 5: 8 h; Lane C: Control (pET30a empty). b Western blot (recombine protein recognized by goat-anti-mouse His Tag antibody). Lane M: Marker; Lane 1: Hc-MAOC-1 purified protein with His Tag. (PDF 427 kb)
Sabethinus Lutz 1904
Creators: name: Harbach, Ralph E.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Culicidae
Sabethinus

description: Subgenus Sabethinus Lutz
Harbach (1991) provided a tabulated comparison of diagnostic and differential characters for the five subgenera of Sabethes. The tabulation serves, like a dichotomous key, to distinguish the subgenera and to determine to which subgenus, based on adult, larval and pupal characters, a species of Sabethes belongs. Only three of those characters are unique, i.e. diagnostic, for the subgenus Sabethinus —the presence of a comb plate and seta 4b-X in larvae, and the dorsal position of seta 8-VII in pupae. The occurrence of these features in the species formally named below immediately identifies them as species of subgenus Sabethinus.
description: Published as part of Harbach, Ralph E., 2018, Two new species of the subgenus Sabethinus of Sabethes (Diptera: Culicidae) from Costa Rica, first confirmation of members of the subgenus in Central America, pp. 269-280 in Zootaxa 4429 (2) on page 270, DOI: 10.11646/zootaxa.4429.2.3, http://zenodo.org/record/1283969
Additional file 2: Figure S1. of Characterization and function analysis of a novel gene, Hc-maoc-1, in the parasitic nematode Haemonochus contortus
Creators: name: Haojie Ding
name: Hengzhi Shi
name: Shi, Yu
name: Xiaolu Guo
name: Xiuping Zheng
name: Xueqiu Chen
name: Qianjin Zhou
name: Yang, Yi
name: Aifang Du
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: a Hc-maoc-1-pET30a transformed Into E. coli (BL21) and induced in 37 °C in different temperature. Lane M: Marker; Lane 1: 0 h; Lane 2: 2 h; 3: 4 h; Lane 4: 6 h; Lane 5: 8 h; Lane C: Control (pET30a empty). b Western blot (recombine protein recognized by goat-anti-mouse His Tag antibody). Lane M: Marker; Lane 1: Hc-MAOC-1 purified protein with His Tag. (PDF 427 kb)
MOESM4 of Effect of RAGE gene polymorphisms and circulating sRAGE levels on susceptibility to gastric cancer: a caseâ  control study
Creators: name: Taijie Li
name: Weijuan Qin
name: Yanqiong Liu
name: Li, Shan
name: Qin, Xue
name: Zhiming Liu
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Additional file 4. Stratified analyses for RAGE genotypes polymorphisms in cases and controls by cancer stage.
Planticonsortiaceae Tedersoo 2024, fam. nov.
Creators: name: Tedersoo, Leho
name: Magurno, Franco
name: Alkahtani, Saad
name: Mikryukov, Vladimir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Densosporales
Planticonsortiaceae

description: Planticonsortiaceae Tedersoo fam. nov.
Type genus.
Planticonsortium C. Walker & D. Redecker.
Description.
Emanating hyphae 0.5–4 μm diam., forming colourless to brown chlamydospores (10–12 μm, up to 35 μm diam.), sometimes rope-like strands; appressoria swollen, frequently with several thin hyphae giving an insect-like appearance. Intraradical mycelium 0.5–4 μm diam., smooth to angular, with (sub-) globose swellings, forming comb-like (ctenoid), fan-shaped, palmate, antler-like, digitate or feather-like structures appearing clasped around epidermal and cortical cells; forming finely branched arbuscules. All hyphae stain darkly in acidic blue stains, more strongly for extraradical hyphae. Monophyletic group in Densosporales (Fig. 2, Suppl. materials 3, 4).
Notes.
Planticonsortiaceae covers roughly one third of Endogonomycetes reads based on LSU (Suppl. material 3) and SSU (Suppl. material 4), but is poorly represented in the ITS dataset. This may be due to the highly divergent and relatively long ITS region (800–1200 bases). Based on the LSU phylogram, Planticonsortiaceae harbours seven genus-level groups with> 100 putative species. The description is adapted from Walker et al. (2018).
description: Published as part of Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir, 2024, Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes), pp. 249-271 in MycoKeys 107 on pages 249-271, DOI: 10.3897/mycokeys.107.125549