cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
What pebbles are made of: Interpretation of the V883 Ori disk
Creators: name: Schoonenberg, Djoeke
name: Okuzumi, Satoshi
name: Ormel, Chris W.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: Recently, an Atacama Large Millimeter/submillimeter Array (ALMA) observation of the water snow line in the protoplanetary disk around the FU Orionis star V883 Ori was reported. The radial variation of the spectral index at mm-wavelengths around the snow line was interpreted as being due to a pileup of particles interior to the snow line. However, radial transport of solids in the outer disk operates on timescales much longer than the typical timescale of an FU Ori outburst ($10^{1}$--$10^{2}$ yr). Consequently, a steady-state pileup is unlikely. We argue that it is only necessary to consider water evaporation and re-coagulation of silicates to explain the recent ALMA observation of V883 Ori because these processes are short enough to have had their impact since the outburst. Our model requires the inner disk to have already been optically thick before the outburst, and our results suggest that the carbon content of pebbles is low.
description: Accepted to A&A Letters
title: ADCO, Cartulaire de Cîteaux pour les possessions de Chaugey et Maison-Dieu (Fin XVe siècle), Cart. 180 (11 H 755), 83 folios, f. 0005
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2017
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Cartulaire de Cîteaux pour les possessions de Chaugey et Maison-Dieu (Fin XVe siècle), Archives départementales de la Côte-d'Or, Cart. 180 (11 H 755), 83 folios, f. 0005, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de Cîteaux pour les possessions de Chaugey et Maison-Dieu (Fin XVe siècle), Archives départementales de la Côte-d'Or, Cart. 180 (11 H 755), 83 folios, f. 0005, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Gapless Color-Flavor-Locked Quark Matter
Creators: name: Alford, Mark
name: Kouvaris, Chris
name: Rajagopal, Krishna
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Superconductivity (cond-mat.supr-con)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: In neutral cold quark matter that is sufficiently dense that the strange quark mass M_s is unimportant, all nine quarks (three colors; three flavors) pair in a color-flavor locked (CFL) pattern, and all fermionic quasiparticles have a gap. We argue that as a function of decreasing quark chemical potential mu or increasing M_s, there is a quantum phase transition from the CFL phase to a new ``gapless CFL phase'' in which only seven quasiparticles have a gap. The transition occurs where M_s^2/mu is approximately equal to 2*Delta, with Delta the gap parameter. Gapless CFL, like CFL, leaves unbroken a linear combination Qtilde of electric and color charges, but it is a Qtilde-conductor with a nonzero electron density. These electrons and the gapless quark quasiparticles make the low energy effective theory of the gapless CFL phase and, consequently, its astrophysical properties are qualitatively different from those of the CFL phase, even though its U(1) symmetries are the same. Both gapless quasiparticles have quadratic dispersion relations at the quantum critical point. For values of M_s^2/mu above the quantum critical point, one branch has conventional linear dispersion relations while the other branch remains quadratic, up to tiny corrections.
description: 5 pages, RevTeX. Version accepted for publication in PRL; (published version will be slightly shorter)
Comparing Dynamical and Photometric Mass Estimates of Low- and High-Redshift Galaxies: Random and Systematic Uncertainties
Creators: name: van der Wel, Arjen
name: Franx, Marijn
name: Wuyts, Stijn
name: van Dokkum, Pieter G.
name: Huang, Jiasheng
name: Rix, Hans-Walter
name: Illingworth, Garth D.
Publisher: name: arXiv
Year: 2006
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We determine the importance of redshift-dependent systematic effects in the determination of stellar masses from broad band spectral energy distributions (SEDs), using high quality kinematic and photometric data of early-type galaxies at z~1 and z~0. We find that photometric masses of z~1 galaxies can be systematically different, by up to a factor of 2, from photometric masses of z~0 galaxies with the same dynamical mass. The magnitude of this bias depends on the choice of stellar population synthesis model and the rest-frame wavelength range used in the fits. The best result, i.e., without significant bias, is obtained when rest-frame optical SEDs are fitted with models from Bruzual&Charlot (2003). When the SEDs are extended to the rest-frame near-IR, a bias is introduced: photometric masses of the z~1 galaxies increase by a factor of 2 relative to the photometric masses of the z~0 galaxies. When we use the Maraston (2005) models, the photometric masses of the z~1 galaxies are low relative to the photometric masses of the z~0 galaxies by a factor of ~1.8. This offset occurs both for fits based on rest-frame optical SEDs, and fits based on rest-frame optical+near-IR SEDs. The results indicate that model uncertainties produce uncertainties as high as a factor of 2.5 in mass estimates from rest-frame near-IR photometry, independent of uncertainties due to unknown star formation histories.
description: Accepted for publication in ApJ (12 pages, 11 figures)
Additional file 1 of The effects of manual therapy in pain and safety of patients with knee osteoarthritis: a systematic review and meta-analysis
Creators: name: Zhu, Bowen
name: Ba, He
name: Kong, Lingjun
name: Fu, Yangyang
name: Ren, Jun
name: Zhu, Qingguang
name: Fang, Min
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy

description: Additional file 1: Appendix 1. Search terms and strategies. Appendix 2. Detailed risk of bias judgment by domains for Stress (Rob2 Tool): at the end of the intervention. Appendix 3. The GRADE approach to evidence synthesis and operationalization of criteria items. Appendix 4. Funnel plot for VAS score. Appendix 5. Sensitivity analysis for VAS score. Appendix 6. Meta-regression (Table S1–5).
Single Z' production at CLIC based on e^- gamma collisions
Creators: name: Soa, D. V.
name: Long, H. N.
name: Binh, D. T.
name: Khoi, D. P.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We analyze the potential of CLIC based on e- gamma collisions to search for new $Z'$ gauge boson. Single Z' production at e-gamma colliders in two SU(3)_C X SU(3)_L X U(1)_N models: the minimal model and the model with right-handed (RH) neutrinos is studied in detail. Results show that new Z' gauge bosons can be observed at the CLIC, and the cross sections in the model with RH neutrinos are bigger than those in the minimal one.
description: 11 pages, 4 figures, To appear in JETP
Reconstruction of an AdS Radiation/Boson Star Bulk Geometry Using Light-cone Cuts
Creators: name: Trevino, Gabriel
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Light-cone cuts have recently been proposed as a method to reconstruct the conformal metric of a holographic spacetime. We explore how additional information about the bulk geometry gets encoded in the structure of these light-cone cuts. In particular, we study how the hyperbolic angle related to a cusp in the light-cone cut encodes information about the matter content of the spacetime. We provide an explicit numerical example reconstructing the metric for a 4- dimensional spacetime composed by the superposition of a boson star and a gas of radiation in AdS.
description: 18 pages, 9 figures
The malarial host-targeting signal is conserved in the Irish potato famine pathogen.
Creators: name: Souvik  Bhattacharjee
name: Hiller, Natalia
name: Liolios, Konstantinos
name: Win, Joe
name: Thirumala-Devi  Kanneganti
name: Young, Carolyn
name: Sophien  Kamoun
name: Haldar, Kasturi
Publisher: name: Carnegie Mellon University
Year: 2006
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Animal and plant eukaryotic pathogens, such as the human malaria parasite Plasmodium falciparum and the potato late blight agent Phytophthora infestans, are widely divergent eukaryotic microbes. Yet they both produce secretory virulence and pathogenic proteins that alter host cell functions. In P. falciparum, export of parasite proteins to the host erythrocyte is mediated by leader sequences shown to contain a host-targeting (HT) motif centered on an RxLx (E, D, or Q) core: this motif appears to signify a major pathogenic export pathway with hundreds of putative effectors. Here we show that a secretory protein of P. infestans, which is perceived by plant disease resistance proteins and induces hypersensitive plant cell death, contains a leader sequence that is equivalent to the Plasmodium HT-leader in its ability to export fusion of green fluorescent protein (GFP) from the P. falciparum parasite to the host erythrocyte. This export is dependent on an RxLR sequence conserved in P. infestans leaders, as well as in leaders of all ten secretory oomycete proteins shown to function inside plant cells. The RxLR motif is also detected in hundreds of secretory proteins of P. infestans, Phytophthora sojae, and Phytophthora ramorum and has high value in predicting host-targeted leaders. A consensus motif further reveals E/D residues enriched within approximately 25 amino acids downstream of the RxLR, which are also needed for export. Together the data suggest that in these plant pathogenic oomycetes, a consensus HT motif may reside in an extended sequence of approximately 25-30 amino acids, rather than in a short linear sequence. Evidence is presented that although the consensus is much shorter in P. falciparum, information sufficient for vacuolar export is contained in a region of approximately 30 amino acids, which includes sequences flanking the HT core. Finally, positional conservation between Phytophthora RxLR and P. falciparum RxLx (E, D, Q) is consistent with the idea that the context of their presentation is constrained. These studies provide the first evidence to our knowledge that eukaryotic microbes share equivalent pathogenic HT signals and thus conserved mechanisms to access host cells across plant and animal kingdoms that may present unique targets for prophylaxis across divergent pathogens.
Flavonoid glycosides from the fruits of Embelia ribes and their anti-oxidant and α-glucosidase inhibitory activities
Creators: name: Qin, Yu
name: Chen, Jin-Peng
name: Li, Chun-Yu
name: Zhu, Ling-Juan
name: Zhang, Xue
name: Wang, Jin-Hui
name: Yao, Xin-Sheng
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Biochemistry
subject: Space Science
subject: Pharmacology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Virology

description: Three new flavonoid glycosides, embeliaflavosides A-C (1–3), together with eight known flavonoid glycosides (4–11), were isolated from the fruits of Embelia ribes. Their structures were established based on the analyses of spectroscopic data. Compounds 1–11 were evaluated for antioxidant and α-glucosidase inhibitory activities. The results revealed that compounds 1–11 owned significant ABTS radical scavenging activity with IC50 values of 2.52–9.78 µM, and DPPH scavenging activity with IC50 values of 7.56–26.47 µM, respectively. However, α-glucosidase inhibition assay indicated that all the isolates were inactive.
Additional file 1 of Review and interlaboratory comparison of the Oddy test methodology
Creators: name: Díaz, Ivan
name: Alvarez-Martin, Alba
name: Grau-Bové, Josep
name: Norrehed, Sara
name: Salvadori, Barbara
name: Kraševec, Ida
name: Duran-Romero, Daniel
name: Cano, Emilio
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Environmental Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Additional file 1: Table S1. Different cleaning procedures for Oddy test glassware used in different protocols in the literature. Table S2. Differences in the preparation of Oddy test metal coupons in different protocols in the literature. Table S3. Different reaction vessel setups of the Oddy test in different protocols in the literature. Table S4. Visual evaluation of the Oddy test in different protocols in the literature. Figure S1. Contribution of the different materials to PC1 for Institution II.
The Hydrogen Burning Turn-off of RS Ophiuchi 2006
Creators: name: Hachisu, Izumi
name: Kato, Mariko
name: Kiyota, Seiichiro
name: Kubotera, Katsuaki
name: Maehara, Hiroyuki
name: Nakajima, Kazuhiro
name: Ishii, Yuko
name: Kamada, Mari
name: Mizoguchi, Sahori
name: Nishiyama, Shinji
name: Sumitomo, Naoko
name: Tanaka, Ken'ichi
name: Yamanaka, Masayuki
name: Sadakane, Kozo
Publisher: name: arXiv
Year: 2006
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We report a coordinated multi-band photometry of the RS Oph 2006 outburst and highlight the emission line free y-band photometry that shows a mid-plateau phase at y ~ 10.2 mag from day 40 to day 75 after the discovery followed by a sharp drop of the final decline. Such mid-plateau phases are observed in other two recurrent novae, U Sco and CI Aql, and are interpreted as a bright disk irradiated by the white dwarf. We have calculated theoretical light curves based on the optically thick wind theory and have reproduced the observed light curves including the mid-plateau phase and the final sharp decline. This final decline is identified with the end of steady hydrogen shell-burning, which turned out the day ~80. This turnoff date is consistent with the end of a supersoft X-ray phase observed with Swift. Our model suggests a white dwarf mass of 1.35 \pm 0.01 M_\sun, which indicates that RS Oph is a progenitor of Type Ia supernovae. We strongly recommend the y-filter observation of novae to detect both the presence of a disk and the hydrogen burning turn-off.
description: to appear in ApJL, 4 pages including 4 figures
Relativistic stars in vector-tensor theories
Creators: name: Kase, Ryotaro
name: Minamitsuji, Masato
name: Tsujikawa, Shinji
Publisher: name: arXiv
Year: 2017
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We study relativistic star solutions in second-order generalized Proca theories characterized by a $U(1)$-breaking vector field with derivative couplings. In the models with cubic and quartic derivative coupling, the mass and radius of stars become larger than those in general relativity for negative derivative coupling constants. This phenomenon is mostly attributed to the increase of star radius induced by a slower decrease of the matter pressure compared to general relativity. There is a tendency that the relativistic star with a smaller mass is not gravitationally bound for a low central density and hence dynamically unstable, but that with a larger mass is gravitationally bound. On the other hand, we show that the intrinsic vector-mode couplings give rise to general relativistic solutions with a trivial field profile, so the mass and radius are not modified from those in general relativity.
description: 20 pages, 7 figures, published version
Una lettera di Filippo V agli Ateniesi di Efestia (Lemno)
Creators: name: Mari, Manuela
name: Culasso Gastaldi, Enrica
Publisher: name: Università Ca’ Foscari Venezia, Italia
Year: 2019

description:

The epigraphic document on which this paper is focused is a letter of the Macedonian king Philip V to the boule and the demos of the Athenians of Hephaestia, on the island of Lemnos, which was found in 1938 in the area of the late Roman Telesterion of the sanctuary of the Kabeiroi. A new edition of the inscription is here offered, along with a detailed epigraphic, historical and linguistic commentary. The text is not entirely preserved, and some points of it are quite difficult to interpret. However, the document is extremely interesting, less for its possible connection with specific events than for the information it provides on several historical issues of a more general kind: the relationship between the Antigonid kings and Lemnos; the inner organisation and institutions of the community of the Athenians on the island; Philip V’s ‘religious policy’ as described by the king himself and by literary sources, and so on.

description: Axon
title: ADCO, Cartulaire de Cîteaux dit Cartularium Vetus (milieu XIIIe siècle) et Notices du XIIe siècle, Cart. 169 (11 H 63), f. 0029r
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2011
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Cartulaire de Cîteaux dit Cartularium Vetus (milieu XIIIe siècle) et Notices du XIIe siècle, Archives départementales de la Côte-d'Or, Cart. 169 (11 H 63), f. 0029r, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de Cîteaux dit Cartularium Vetus (milieu XIIIe siècle) et Notices du XIIe siècle, Archives départementales de la Côte-d'Or, Cart. 169 (11 H 63), f. 0029r, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Theory of non-collinear interactions beyond Heisenberg exchange; applications to bcc Fe
Creators: name: Szilva, A.
name: Thonig, D.
name: Bessarab, P. F.
name: Kvashnin, Y. O.
name: Rodrigues, D. C. M.
name: Cardias, R.
name: Pereiro, M.
name: Nordström, L.
name: Bergman, A.
name: Klautau, A. B.
name: Eriksson, O.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We show for a simple non-collinear configuration of the atomistic spins (in particular, where one spin is rotated by a finite angle in a ferromagnetic background) that the pairwise energy variation computed in terms of multiple scattering formalism cannot be fully mapped onto a bilinear Heisen- berg spin model even in the lack of spin-orbit coupling. The non-Heisenberg terms induced by the spin-polarized host appear in leading orders in the expansion of the infinitesimal angle variations. However, an Eg-T2g symmetry analysis based on the orbital decomposition of the exchange param- eters in bcc Fe leads to the conclusion that the nearest neighbor exchange parameters related to the T2g orbitals are essentially Heisenberg-like: they do not depend on the spin configuration, and can in this case be mapped onto a Heisenberg spin model even in extreme non-collinear cases.
Wartime diary of a headmaster's wife
Creators: name: Project Team, Their Finest Hour
Publisher: name: University of Oxford
Year: 2024
Subjects: classificationCode: 430304
subject: British history
classificationCode: 430308
subject: European history (excl. British, classical Greek and Roman)
classificationCode: 430316
subject: International history

description: My grandfather was a headmaster in Harwich, and the school was evacuated to Gloucestershire. The diary covers part of the time they spent there. Day-to-day stories of what it was like, with comments about the war, hearing planes flying over, and bombing Bristol contrasting details of church services and general life.She also wrote a letter to her father, which I have, describing visiting the U-boats in the River Orwell, Essex, in 1918.
Ephebe lanata Vain.
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Fungi
Ascomycota
Lichinomycetes
Lichinales
Lichinaceae
Ephebe
Ephebe lanata

description: Lichen lanatus Linnaeus, Species Plantarum 2: 1155. 1753.
"Habitat in Europae frigidae rupibus." RCN: 8250.
 Lectotype (Howe in Bull. Torrey Bot. Club 39: 201. 1912): Löfling 89 , Herb. Linn. No. 1273.284 (LINN).
 Current name: Ephebe lanata (L.) Vain. (Lichinaceae).
 Note: See detailed review by Jørgensen & al. (in Bot. J. Linn. Soc. 115: 326-328, 378, f. 42. 1994).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part L), pp. 610-650 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 628, DOI: 10.5281/zenodo.291971
Testing pseudo-complex general relativity with gravitational waves
Creators: name: Nielsen, Alex B.
name: Birnholtz, Ofek
Publisher: name: arXiv
Year: 2017
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: We show how the model of pseudo-complex general relativity can be tested using gravitational wave signals from coalescing compact objects. The model, which agrees with Einstein gravity in the weak-field limit, diverges dramatically in the near-horizon regime, with certain parameter ranges excluding the existence of black holes. We show that simple limits can be placed on the model in both the inspiral and ringdown phase of coalescing compact objects. We discuss further how these bounds relate to current observational limits. In particular, for minimal scenarios previously considered in the literature, gravitational wave observations are able to constrain pseudo-complex general relativity parameters to values that require the existence of black hole horizons.
Generalized Parton Distributions at x->1
Creators: name: Yuan, Feng
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Generalized parton distributions at large $x$ are studied in perturbative QCD approach. As $x\to 1$ and at finite $t$, there is no $t$ dependence for the GPDs which means that the active quark is at the center of the transverse space. We also obtain the power behavior: $H_q^π(x,ξ,t)\sim (1-x)^2/(1-ξ^2)$ for pion; $H_q(x,ξ,t)\sim (1-x)^3/(1-ξ^2)^2$ and $E_q(x,ξ,t)\sim (1-x)^5/(1-ξ^2)^3f(ξ)$ for nucleon, where $f(ξ)$ represents the additional dependence on $ξ$.
description: 7 pages, 2 figures
L’attività agonistica di attori e musicisti nelle iscrizioni greche del I e II secolo d.C.
Creators: name: Di Nanni, Diva
Publisher: name: Università Ca’ Foscari Venezia, Italia
Year: 2019

description:

The theme of the agonistic activity of actors and musicians in the Greco-Roman era is very broad and, consequently, offers multiple points of interest and research. Modern literature on the subject is varied, although it is not easy to find a text that, from a purely epigraphic point of view, deals with the subject in a complete way. The search was accompanied by a series of tables and lists that allow to summarise a whole series of results. The first table is organised based on the names of participants. This is followed by the index of specialities and festivals, with the specification of which speciality races were held in each location. A second table is organised to list the origins of the various artists but also the corresponding competition. Finally, it was deemed necessary to draw up a last list, in which all the artists were entered and for which, instead of specifying the single tender in which they were winners, the reference registration shows the broader term, starting from the more common one, known as periodonikes.

description: Axon
The malaria secretome: from algorithms to essential function in blood stage infection.
Creators: name: Ooij, Christiaan Van
name: Tamez, Pamela A.
name: Souvik  Bhattacharjee
name: Hiller, Natalia
name: Harrison, Travis
name: Liolios, Konstantinos
name: Kooij, Taco
name: Ramesar, Jai
name: Bharath  Balu
name: Adams, John H.
name: Waters, Andrew P.
name: Janse, Chris J.
name: Haldar, Kasturi
Publisher: name: Carnegie Mellon University
Year: 2008
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: The malaria agent Plasmodium falciparum is predicted to export a "secretome" of several hundred proteins to remodel the host erythrocyte. Prediction of protein export is based on the presence of an ER-type signal sequence and a downstream Host-Targeting (HT) motif (which is similar to, but distinct from, the closely related Plasmodium Export Element [PEXEL]). Previous attempts to determine the entire secretome, using either the HT-motif or the PEXEL, have yielded large sets of proteins, which have not been comprehensively tested. We present here an expanded secretome that is optimized for both P. falciparum signal sequences and the HT-motif. From the most conservative of these three secretome predictions, we identify 11 proteins that are preserved across human- and rodent-infecting Plasmodium species. The conservation of these proteins likely indicates that they perform important functions in the interaction with and remodeling of the host erythrocyte important for all Plasmodium parasites. Using the piggyBac transposition system, we validate their export and find a positive prediction rate of approximately 70%. Even for proteins identified by all secretomes, the positive prediction rate is not likely to exceed approximately 75%. Attempted deletions of the genes encoding the conserved exported proteins were not successful, but additional functional analyses revealed the first conserved secretome function. This gave new insight into mechanisms for the assembly of the parasite-induced tubovesicular network needed for import of nutrients into the infected erythrocyte. Thus, genomic screens combined with functional assays provide unexpected and fundamental insights into host remodeling by this major human pathogen.
9p21 loss confers a cold tumor immune microenvironment and primary resistance to immune checkpoint therapy.
Creators: name: Han, Guangchun
name: Yang, Guoliang
name: Hao, Dapeng
name: Lu, Yang
name: Thein, Kyaw
name: Simpson, Benjamin S
name: Chen, Jianfeng
name: Sun, Ryan
name: Alhalabi, Omar
name: Wang, Ruiping
name: Dang, Minghao
name: Dai, Enyu
name: Zhang, Shaojun
name: Nie, Fengqi
name: Zhao, Shuangtao
name: Guo, Charles
name: Hamza, Ameer
name: Czerniak, Bogdan
name: Cheng, Chao
name: Siefker-Radtke, Arlene
name: Bhat, Krishna
name: Futreal, Andrew
name: Peng, Guang
name: Wargo, Jennifer
name: Peng, Weiyi
name: Kadara, Humam
name: Ajani, Jaffer
name: Swanton, Charles
name: Litchfield, Kevin
name: Ahnert, Jordi Rodon
name: Gao, Jianjun
name: Wang, Linghua
Publisher: name: The Francis Crick Institute
Year: 2021
Subjects: classificationCode: Tumour Biology
subject: Tumour Biology
classificationCode: Signalling & Oncogenes
subject: Signalling & Oncogenes
classificationCode: Genetics & Genomics
subject: Genetics & Genomics
classificationCode: Genome Integrity & Repair
subject: Genome Integrity & Repair
classificationCode: Human Biology & Physiology
subject: Human Biology & Physiology
classificationCode: Chemical Biology & High Throughput
subject: Chemical Biology & High Throughput
classificationCode: Ecology,Evolution & Ethology
subject: Ecology,Evolution & Ethology
classificationCode: Computational & Systems Biology
subject: Computational & Systems Biology

description: Immune checkpoint therapy (ICT) provides substantial clinical benefits to cancer patients, but a large proportion of cancers do not respond to ICT. To date, the genomic underpinnings of primary resistance to ICT remain elusive. Here, we performed immunogenomic analysis of data from TCGA and clinical trials of anti-PD-1/PD-L1 therapy, with a particular focus on homozygous deletion of 9p21.3 (9p21 loss), one of the most frequent genomic defects occurring in ~13% of all cancers. We demonstrate that 9p21 loss confers "cold" tumor-immune phenotypes, characterized by reduced abundance of tumor-infiltrating leukocytes (TILs), particularly, T/B/NK cells, altered spatial TILs patterns, diminished immune cell trafficking/activation, decreased rate of PD-L1 positivity, along with activation of immunosuppressive signaling. Notably, patients with 9p21 loss exhibited significantly lower response rates to ICT and worse outcomes, which were corroborated in eight ICT trials of >1,000 patients. Further, 9p21 loss synergizes with PD-L1/TMB for patient stratification. A "response score" was derived by incorporating 9p21 loss, PD-L1 expression and TMB levels in pre-treatment tumors, which outperforms PD-L1, TMB, and their combination in identifying patients with high likelihood of achieving sustained response from otherwise non-responders. Moreover, we describe potential druggable targets in 9p21-loss tumors, which could be exploited to design rational therapeutic interventions.
Μηδὲν (ὑπ)εναντίον πράττειν: uno slogan della diplomazia filoromana dopo Pidna?
Creators: name: Gandini, Alberto
Publisher: name: Università Ca’ Foscari Venezia, Italia
Year: 2019

description:

This paper takes as its starting point an analysis of three inscriptions dating from the second quarter of the 2nd century BC, related to matters of international politics within the micro-Asiatic Hellenistic world: the treaty of alliance between Pharnakes I and the polis of Chersonesos (IOSPE I2 nr. 402), the treaty of alliance among Plarasa-Aphrodisias, Kibyra and Tabai (Milner 2007), and the (possible) foundation act of the Kibyratic Tetrapolis (I.Kibyra I nr. 2). What is most interesting about these major political agreements is that all the contracting parties make a common commitment not to undertake anything contrary to the Roman decrees or interests; in addition to this, they set it as a condition for the validity of the acts and express it by using much the same wordings. These texts are not addressed to a Roman audience; notwithstanding, they betray a common need to display an undisputed loyalty to the Roman cause. Accordingly, there is a strong case for supposing the action or the presence of the Roman Senate behind them. Indeed, it is telling a comparison to some Roman inscriptions dated to the 2nd century BC, whereby similar phraseologies figure in the words of the Romans themselves. Such coincidences demonstrate the sharing of a highly codified language by different political actors and can be related to the stress put by the ancient narratives (notably, the Histories by Polybius) on the necessity to obey Roman orders in the aftermath of the Third Macedonian War. Thus, we can recover an element of the script of the philo-Roman diplomacy in a specific historical and geopolitical context; it reflects the manner the Romans looked at their own imperium after Pydna, when a radical shift took place in the power relationships within the Hellenistic world.

description: Axon
Non-Abelian Fermionization and Fractional Quantum Hall Transitions
Creators: name: Hui, Aaron
name: Mulligan, Michael
name: Kim, Eun-Ah
Publisher: name: arXiv
Year: 2017
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: There has been a recent surge of interest in dualities relating theories of Chern-Simons gauge fields coupled to either bosons or fermions within the condensed matter community, particularly in the context of topological insulators and the half-filled Landau level. Here, we study the application of one such duality to the long-standing problem of quantum Hall inter-plateaux transitions. The key motivating experimental observations are the anomalously large value of the correlation length exponent $ν\approx 2.3$ and that $ν$ is observed to be super-universal, i.e., the same in the vicinity of distinct critical points. Duality motivates effective descriptions for a fractional quantum Hall plateau transition involving a Chern-Simons field with $U(N_c)$ gauge group coupled to $N_f = 1$ fermion. We study one class of theories in a controlled limit where $N_f \gg N_c$ and calculate $ν$ to leading non-trivial order in the absence of disorder. Although these theories do not yield an anomalously large exponent $ν$ within the large $N_f \gg N_c$ expansion, they do offer a new parameter space of theories that is apparently different from prior works involving abelian Chern-Simons gauge fields.
description: 9 pages, 2 figures, fixed typos and clarified notation
SPIROU: A code to estimate the radio emission from star-planet interaction
Creators: name: Pérez-Torres, Miguel
name: Peña-Moñino, Luis
Publisher: name: Zenodo
Year: 2024

description: We present SPIROU, a code in Python that estimates teh radio emission from sub-Alfvénic star-planet interaction.  SPIROU is based on the code developed by Pérez-Torres et al. (2021).  The current version assumes an isothermal stellar wind, whose mass-loss rate is constant, and takes into account the partial suprression of radio emission due to free-free absorption of the thermal electrons in the wind. SPIROU can beuseful to constrain the mass-loss rate of the star and/or magnetic field of planet.
Soñar con los ojos abiertos. Punteo para una (re)construcción de la poética de Fernando Birri
Creators: name: Franzoso, Marco
Publisher: name: Università Ca’ Foscari Venezia, Italia
Year: 2019

description:

In this article we will introduce Fernando Birri (1925-2017), intellectual from Argentina. We’ll be closing in the establishment of an author’s poetics based in his text Soñar con los ojos abiertos. Las treinta lecciones de Stanford. This book, compilation of a seminar given by Birri in 2001, could be considered an explicit poetic statement, starting point for a future deeper investigation.

description: Rassegna iberistica
The kinesin family member BimC contains a second microtubule binding region attached to the N terminus of the motor domain.
Creators: name: Stock, Maryanne F.
name: Chu, Jessica
name: Hackney, David
Publisher: name: Carnegie Mellon University
Year: 2003
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: The kinesin family member BimC has a highly positively charged domain of approximately 70 amino acids at the N terminus of the motor domain. Motor domain constructs of BimC were prepared with and without this extra domain to determine its influence. The level of microtubules needed for half saturation of the ATPase of BimC motor domain constructs is reduced by approximately 7000-fold at low ionic strength upon addition of this extra N-terminal extension. Although the change in microtubule affinity is less at higher salt, addition of the N-terminal domain still produces a 20-fold increase in affinity for microtubules in 200 mm potassium acetate. A fusion protein of the N-terminal domain and thioredoxin binds tightly to MTs at low salt, consistent with the increased affinity of motor domain constructs (which contain the N-terminal domain) being due to the additional binding of the N-terminal domain to the microtubule. Hydrodynamic analysis indicates that the N-terminal extension is in a highly extended conformation, suggesting that it may be intrinsically disordered. Fusion of the N-terminal extension of BimC onto the motor domain of conventional kinesin produces a similar large increase in microtubule affinity without significant reduction in kcat or velocity in an in vitro motility assay, suggesting that the N-terminal extension can act in a modular manner to increase the microtubule affinity of kinesin motor domains without a decrease in velocity.
title: ADCO, Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Cart. 32 (G 136), 745 folios, f. 0211
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Archives départementales de la Côte-d'Or, Cart. 32 (G 136), 745 folios, f. 0211, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Archives départementales de la Côte-d'Or, Cart. 32 (G 136), 745 folios, f. 0211, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
Sara Robles Ávila y Antonio Moreno-Ortiz (eds). Comunicación mediada por ordenador
Creators: name: Trovato, Giuseppe
Publisher: name: Università Ca’ Foscari Venezia, Italia
Year: 2019

description:

Reseña de Robles Ávila, Sara; Moreno-Ortiz, Antonio (eds) (2019). Comunicación mediada por ordenador: la lengua, el discurso y la imagen. Madrid: Cátedra, pp. 337.

description: Rassegna iberistica
On the frequency of gravitational waves
Creators: name: Caprini, Chiara
name: Durrer, Ruth
name: Sturani, Riccardo
Publisher: name: arXiv
Year: 2006
Subjects: subject: Astrophysics (astro-ph)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We show that there are physically relevant situations where gravitational waves do not inherit the frequency spectrum of their source but its wavenumber spectrum.
description: 4 pages, 2 figures. In v2 minor corrections and a full sentence changed in section III in the paragraph about turbulence. Version accepted for publication by PRD
The invertebrate deuterostomes: an introduction to their phylogeny, reproduction, development, and genomics.
Creators: name: Ettensohn, Charles A.
name: Wessel, Gary M.
name: Wray, Gregory A.
Publisher: name: Carnegie Mellon University
Year: 2004
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: The invertebrate deuterostomes comprise approximately 10,000 species of marine animals distributed throughout the oceans of the world. Recent molecular phylogenetic studies suggest that the deuterostomes include only the echinoderms, hemichordates, and chordates. Among the echinoderms, sea urchins are most widely used for developmental studies. Sexual reproduction is by far the most common mode within the group. Although sexual reproduction is predominant, reproduction by asexual budding occurs in a number of groups that have colonial forms, including pterobranch hemichordates and the colonial ascidians. Experimental work with invertebrate deuterostomes has played an important role in developmental biology, cell biology, and genetics. The ability to produce vast numbers of synchronously developing embryos (using methods that are best developed with sea urchins) facilitates a wide variety of biochemical and molecular biological approaches, from protein purification to complementary DNA (cDNA) library construction. Genomic resources are being developed from a variety of these organisms because of the utility of invertebrate deuterostomes for developmental analysis and their close phylogenetic relationship to vertebrates. The draft genomic sequences of two invertebrate deuterostomes, the related ascidians C. intestinalis and C. savignyi, are released. A useful feature of invertebrate deuterostome genomes is that many genes appear to be present in single copies that are found in multiple copies in vertebrate genomes.
Addressing Neutrino Mixing Models with DUNE and T2HK
Creators: name: Agarwalla, Sanjib Kumar
name: Chatterjee, Sabya Sachi
name: Petcov, S. T.
name: Titov, A. V.
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: Instrumentation and Detectors (physics.ins-det)
subject: FOS: Physical sciences

description: We consider schemes of neutrino mixing arising within the discrete symmetry approach to the well-known flavour problem. We concentrate on $3ν$ mixing schemes in which the cosine of the Dirac CP violation phase $δ_\mathrm{CP}$ satisfies a sum rule by which it is expressed in terms of three neutrino mixing angles $θ_{12}$, $θ_{23}$, and $θ_{13}$, and a fixed real angle $θ^ν_{12}$, whose value depends on the employed discrete symmetry and its breaking. We consider five underlying symmetry forms of the neutrino mixing matrix: bimaximal (BM), tri-bimaximal (TBM), golden ratio A (GRA) and B (GRB), and hexagonal (HG). For each symmetry form, the sum rule yields specific prediction for $\cosδ_\mathrm{CP}$ for fixed $θ_{12}$, $θ_{23}$, and $θ_{13}$. In the context of the proposed DUNE and T2HK facilities, we study (i) the compatibility of these predictions with present neutrino oscillation data, and (ii) the potential of these experiments to discriminate between various symmetry forms.
description: 27 pages, 6 pdf figures, 7 tables. The discussion of the T2HKK set-up extended. In Figure 1, a line corresponding to the combined potential of DUNE and T2HKK added. A new appendix on the impact of marginalisation over $\Delta m_{31}^2$ containing one new figure added. One reference added. Typos corrected. Matches version published in EPJ C
Dermatocarpon miniatum W. Mann 1825
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Fungi
Ascomycota
Eurotiomycetes
Verrucariales
Verrucariaceae
Dermatocarpon
Dermatocarpon miniatum

description: Lichen miniatus Linnaeus, Species Plantarum 2: 1149. 1753.
"Habitat in Angliae, Helvetiae, Italiae, rupibus alpinis." RCN: 8223.
 Lectotype (Jørgensen & al. in Bot. J. Linn. Soc. 115: 330. 1994): [icon] " Lichenoides coriaceum nebulosum cinereum punctatum, subtus fulvum" in Dillenius, Hist. Musc.: 223, t. 30, f. 127. 1741. - Epitype (Jørgensen & al. in Bot. J. Linn. Soc. 115: 330, 378. 1994): Herb. Dillenius Tab. XXX, No. 127B (OXF).
 Current name: Dermatocarpon miniatum (L.) W. Mann (Verrucariaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part L), pp. 610-650 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 628, DOI: 10.5281/zenodo.291971
Carmen Martín Gaite. El cuarto de atrás
Creators: name: Toribio, Andrea
Publisher: name: Università Ca’ Foscari Venezia, Italia
Year: 2019

description:

Reseña de Martín Gaite, Carmen (2018). El cuarto de atrás. Edición de José Teruel. Madrid: Cátedra, pp. 277.

description: Rassegna iberistica
The Maximum B-mode Polarization of the Cosmic Microwave Background from Inhomogeneous Reionization
Creators: name: Mortonson, Michael J.
name: Hu, Wayne
Publisher: name: arXiv
Year: 2006
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We compute the B-mode polarization power spectrum of the CMB from an epoch of inhomogeneous reionization, using a simple model in which HII regions are represented by ionized spherical bubbles with a log normal distribution of sizes whose clustering properties are determined by large-scale structure. Both the global ionization fraction and the characteristic radius of HII regions are allowed to be free functions of redshift. Models that would produce substantial contamination to degree scale gravitational wave B-mode measurements have power that is dominated by the shot noise of the bubbles. Rare bubbles of >100 Mpc at z>20 can produce signals that in fact exceed the B-modes from gravitational lensing and are comparable to the maximal allowed signal of gravitational waves (~0.1uK) while still being consistent with global constraints on the total optical depth. Even bubbles down to 20 Mpc at z~15, or 40 Mpc at z~10 can be relevant (0.01uK) once the lensing signal is removed either statistically or directly. However, currently favored theoretical models that have ionization bubbles that only grow to such sizes at the very end of a fairly prompt and late reionization produce signals which are at most at these levels.
description: 14 pages, 11 figures; published in ApJ; corrected Fig. 4 and updated references
The Incompatible Desiderata of Gene Cluster Properties
Creators: name: Hoberman, Rose
name: Durand, Dannie
Publisher: name: Carnegie Mellon University
Year: 2005
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: There is widespread interest in comparative genomics in determining if historically and/or functionally related genes are spatially clustered in the genome, and whether the same sets of genes reappear in clusters in two or more genomes. We formalize and analyze the desirable properties of gene clusters and cluster definitions. Through detailed analysis of two commonly applied types of cluster, r-windows and max-gap, we investigate the extent to which a single definition can embody all of these properties simultaneously. We show that many of the most important properties are difficult to satisfy within the same definition. We also examine whether one commonly assumed property, which we call nestedness, is satisfied by the structures present in real genomic data.