cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Elotespora mumbaiensis Rashmi Dubey 2021, sp. nov.
Creators: name: Dubey, Rashmi
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Fungi
Ascomycota
Elotespora
Elotespora mumbaiensis

description: Elotespora mumbaiensis Rashmi Dubey sp. nov. (Fig.1)
MycoBank MB 840079
Mycelium mostly immersed. Conidiomata eustromatic, cyathiform, scattered, almost superficial somewhat immersed on the substratum, dark brown to black, layers of cell forming textura angularis, unilocular, 22–30 μm diam., 11–14 μm deep. Conidiophores not observed, Conidiogenous cells not observed. Conidogenesis not observed, but Conidiomatal ‘cup’ like structure is visible both under the compound microscope and Scanning Electron Microscope, Conidial secession is not observed, but some part of the conidiomatal ‘cup’ is still attached on the base of seceded conidial chain indicating that conidia are produced directly from the conidiomatal ‘cup’. Conidia are produced directly from the conidiomata and forms acropetal chains having 2–5 conidia per chain, and the chains are sometimes branched. Conidia dry, muriform, initially brown, on maturity turn blackish brown at the apical and basal end, elongated to ellipsoidal, sometimes twisted, 42–80 × 15–24 μm (60.27 × 21.23, n=15) widely obtuse/rounded at the apex, truncate at the base, basal conidia straight and wider than other apical conidia, sometimes conidia initials are also visible on the lateral sides of conidia indicating the branching pattern of the conidial chain.
Additional Material/cultures examined: Culture was obtained on Potato Dextrose Agar (PDA) medium and malt extract agar medium (MEA) with different light and dark conditions. Vegetative hyphae grew on medium on seven days but did not sporulate, and culture died.
Gene sequence ex-holotype: Not known.
Teleomorh: not observed
Habitat and distribution: Terrestrial, Maharashtra, India
Holotype: IND356, Maharashtra, Mumbai, Sanjay Gandhi National Park, Yeoor range (19° 14’ 01.97” N 72° 57’ 06.90” E) 16 th October 2018, Rashmi Dubey, on Dead twig litter, holotype deposited in Botanical Survey of India, Western Regional Centre, Pune, 209219 BSI (WC), Mycobank MB 840079
Etymology: species named after the place (city) of collection (Mumbai)
description: Published as part of Dubey, Rashmi, 2021, Elotespora mumbaiensis sp. nov.: A novel species of Anamorphic Ascomycota reported from Peninsular India, pp. 177-180 in Phytotaxa 529 (1) on pages 178-179, DOI: 10.11646/phytotaxa.529.1.15, http://zenodo.org/record/5814242
Dentilla Lelej 1980
Creators: name: Lelej, Arkady S.
name: Proshchalykin, Maxim Yu.
name: Maharramov, Mahir M.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mutillidae
Dentilla

description: 8. Genus Dentilla Lelej in Lelej & Kabakov, 1980
Type species: Mutilla erronea André, 1902, ♂, by original designation.
Twenty-three species are recognized predominantly from Palaearctic Region, six Afrotropical species (two of them penetrate from the Palaearctic), and two Oriental species (Pagliano et al. 2020). Five species of this genus are distributed in Azerbaijan; one of them is newly recorded from Azerbaijan.
description: Published as part of Lelej, Arkady S., Proshchalykin, Maxim Yu. & Maharramov, Mahir M., 2022, A review of the Mutillidae (Hymenoptera) of Azerbaijan, pp. 61-86 in Zootaxa 5155 (1) on page 70, DOI: 10.11646/zootaxa.5155.1.3, http://zenodo.org/record/6669410
Elotespora
Creators: name: Dubey, Rashmi
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Fungi
Ascomycota
Elotespora

description: Key to species of Elotespora species
1. Cyathiform conidiomata, obscure conidiogenesis, large, muriform conidia singly arising from the conidiomatal ‘cup ’like structure ........................................................................................................................................................................... E. mexicana
2. Cyathiform conidiomata, obscure conidiogenesis having blastocatenate mode of conidial development ........................................3
3a. Conidia muriform, pale brown, only 2 conidia in a chain, 95–105 × 36–42 μm .................................................................. E. indica
3b. Conidia muriform, brown with dark brown apical and basal ends, 42–80 × 15–26 μm 2–5 conidia in a conidial chain, the chain is sometimes branched ..................................................................................................................................... E. mumbaiensis sp. nov.
description: Published as part of Dubey, Rashmi, 2021, Elotespora mumbaiensis sp. nov.: A novel species of Anamorphic Ascomycota reported from Peninsular India, pp. 177-180 in Phytotaxa 529 (1) on page 179, DOI: 10.11646/phytotaxa.529.1.15, http://zenodo.org/record/5814242
A. QAHHOR'S STORIES REFLECT THE TRAGEDIES OF HIS PERIOD
Creators: name: Isayeva, Shoira
Publisher: name: Zenodo
Year: 2024

description: This article analyzes the ideological and artistic aspects of Abdullah Qahhor's stories. In addition, attempts have been made to portray the tragedy of the period in the writer's style and narratives. Abdulla Kakhhor is one of the  writer who vividly reflected the tragedy of time, the suffering of people, social problems in all his works and left an indelible mark on our literature with his works of genius. In his works, the author was able to reveal the truth of life, sometimes with irony, sometimes with laughter.
Additional file 1: Table S1. of Changes in the Sclerotinia sclerotiorum transcriptome during infection of Brassica napus
Creators: name: Seifbarghi, Shirin
name: M. Borhan
name: Yangdou Wei
name: Coutu, Cathy
name: Robinson, Stephen
name: Hegedus, Dwayne
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Oligonucleotides used for ddPCR. Sequences of the forward (F) and reverse (R) primers used for droplet digital PCR (ddPCR) to examine expression of select Sclerotinia sclerotiorum genes during infection of Brassica napus. (DOCX 17 kb)
Dentilla caucasica Lelej 1985
Creators: name: Lelej, Arkady S.
name: Proshchalykin, Maxim Yu.
name: Maharramov, Mahir M.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mutillidae
Dentilla
Dentilla caucasica

description: Dentilla caucasica Lelej, 1985
Dentilla caucasica Lelej, 1985: 193, ♀, holotype, Azerbaijan: Nakhchivan: Ordubad, 10.VI.1934, Kirshenblat [ZIN], examined.
Material examined. No additional material has been studied.
Distribution. Azerbaijan.
description: Published as part of Lelej, Arkady S., Proshchalykin, Maxim Yu. & Maharramov, Mahir M., 2022, A review of the Mutillidae (Hymenoptera) of Azerbaijan, pp. 61-86 in Zootaxa 5155 (1) on page 70, DOI: 10.11646/zootaxa.5155.1.3, http://zenodo.org/record/6669410
Callindra equitalis
Creators: name: Singh, Navneet
name: Joshi, Rahul
name: Kirti, Jagbir Singh
name: Bisht, Santosh Singh
name: Param, Harsimranjeet Singh
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Arctiidae
Callindra
Callindra equitalis

description: 30. Callindra equitalis (Kollar, [1844]): 465
= Callimorpha equitalis Var. ochricolor Alpheraky, 1897: 128
Type locality: Himal. [Himalaya or Himachal] Massuri [India: Uttarakhand]
Distribution: North West and North East Himalayas, Meghalaya (Khasi Hills) (Dubatolov 2010), Maharashtra, Sikkim, West Bengal (Chandra et al. 2019).
description: Published as part of Singh, Navneet, Joshi, Rahul, Kirti, Jagbir Singh, Bisht, Santosh Singh & Param, Harsimranjeet Singh, 2021, A catalogue of Indian Arctiinae (Erebidae, Lepidoptera), pp. 1-118 in Zootaxa 5058 (1) on page 20, DOI: 10.11646/zootaxa.5058.1.1, http://zenodo.org/record/5602576
Engineering a Josephson junction chain for the simulation of the clock model
Creators: name: Wauters, Matteo M.
name: Maffi, Lorenzo
name: Burrello, Michele
Publisher: name: arXiv
Year: 2024
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The continuous improvement of fabrication techniques and high-quality semiconductor-superconductor interfaces allowed for unprecedented tunability of Josephson junction arrays (JJA), making them a promising candidate for analog quantum simulations of many-body phenomena. While most experimental proposals so far focused on quantum simulations of ensembles of two-level systems, the possibility of tuning the current-phase relation beyond the sinusoidal regime paves the way for studying statistical physics models with larger local Hilbert spaces. Here, we investigate a particular JJA architecture that can be mapped into a $\mathbb{Z}_3$ clock model. Through matrix-product-states simulations and bosonization analysis, we show that few experimentally accessible control parameters allow for the exploration of the rich phase diagrams of the associated low-energy field theories. Our results expand the horizon for analog quantum simulations with JJAs towards models that can not be efficiently captured with qubit architectures.
description: 13+5 pages, 10+2 figures
Constraints on Axion-like Particles from the gamma-ray observation of the Galactic Center
Creators: name: Zhu, Ben-Yang
name: Huang, Xiaoyuan
name: Yin, Peng-Fei
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: High energy photons originating from the Galactic Center (GC) region have the potential to undergo significant photon-axion-like particle (ALP) oscillation effects, primarily induced by the presence of intense magnetic fields in this region. Observations conducted by imaging atmospheric Cherenkov telescopes have detected very high energy gamma-rays originating from a point source known as HESS J1745-290, situated in close proximity to the GC. This source is conjectured to be associated with the supermassive black hole Sagittarius A$^*$. The GC region contains diverse structures, including molecular clouds and non-thermal filaments, which collectively contribute to the intricate magnetic field configurations in this region. By utilizing a magnetic field model specific in the GC region, we explore the phenomenon of photon-ALP oscillations in the gamma-ray spectrum of HESS J1745-290. Our analysis does not reveal any discernible signature of photon-ALP oscillations, yielding significant constraints that serve as a complement to gamma-ray observations of extragalactic sources across a broad parameter region. The uncertainties arising from the outer Galactic magnetic field models have minor impacts on our results, except for ALP masses around 10$^{-7}$ eV, as the dominant influence originates from the intense magnetic field strength in the inner GC region.
description: 10 pages, 8 figures, accepted by JCAP
Additional file 2: Table S2. of Changes in the Sclerotinia sclerotiorum transcriptome during infection of Brassica napus
Creators: name: Seifbarghi, Shirin
name: M. Borhan
name: Yangdou Wei
name: Coutu, Cathy
name: Robinson, Stephen
name: Hegedus, Dwayne
Publisher: name: Figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology

description: Output summary generated by CLC Genomics Workbench of mapped Illumina reads against S. sclerotiorum isolate 1980 reference transcriptome. Account of the total and mapped Illumina reads generated from three biological replicates of libraries generated from Sclerotinia sclerotiorum mycelia at various times during infection of Brassica napus. (DOCX 22 kb)
Potentilla acaulis L.
Creators: name: Šída, Otakar
name: Böhmová, Alžběta
name: Rosenbaumová, Radka
name: Ducháček, Michal
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Rosales
Rosaceae
Potentilla
Potentilla acaulis

description: Lectotypification of Potentilla acaulis
As shown above, the only element that represents the original material of Potentilla acaulis is a plantlet mounted on the right part of the herbarium sheet PR 615688, deposited in the Herbarium of National Museum in Prague. This specimen is therefore formally designated here as lectotype:
description: Published as part of Šída, Otakar, Böhmová, Alžběta, Rosenbaumová, Radka & Ducháček, Michal, 2024, Typification and interpretation of Potentilla acaulis L. (Rosaceae), pp. 237-246 in Phytotaxa 638 (3) on page 242, DOI: 10.11646/phytotaxa.638.3.3, http://zenodo.org/record/13213012
From Halos to Galaxies. VI. Improved halo mass estimation for SDSS groups and measurement of the halo mass function
Creators: name: Zhao, Dingyi
name: Peng, Yingjie
name: Jing, Yipeng
name: Yang, Xiaohu
name: Ho, Luis C.
name: Renzini, Alvio
name: Gallazzi, Anna R.
name: Lyu, Cheqiu
name: Maiolino, Roberto
name: Dou, Jing
name: Gao, Zeyu
name: Gu, Qiusheng
name: Mannucci, Filippo
name: Mo, Houjun
name: Wang, Bitao
name: Wang, Enci
name: Wang, Kai
name: Wang, Yu-Chen
name: Xu, Bingxiao
name: Yuan, Feng
name: Zhu, Xingye
Publisher: name: arXiv
Year: 2024
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: In $Λ$CDM cosmology, galaxies form and evolve in their host dark matter (DM) halos. Halo mass is crucial for understanding the halo-galaxy connection. The abundance matching (AM) technique has been widely used to derive the halo masses of galaxy groups. However, quenching of the central galaxy can decouple the coevolution of its stellar mass and DM halo mass. Different halo assembly histories can also result in significantly different final stellar mass of the central galaxies. These processes can introduce substantial uncertainties in the halo masses derived from the AM method, particularly leading to a systematic bias between groups with star-forming centrals (blue groups) and passive centrals (red groups). To improve, we developed a new machine learning (ML) algorithm that accounts for these effects and is trained on simulations. Our results show that the ML method eliminates the systematic bias in the derived halo masses for blue and red groups and is, on average, $\sim1/3$ more accurate than the AM method. With careful calibration of observable quantities from simulations and observations from SDSS, we apply our ML model to the SDSS Yang et al. groups to derive their halo masses down to $10^{11.5}\mathrm{M_\odot}$ or even lower. The derived SDSS group halo mass function agrees well with the theoretical predictions, and the derived stellar-to-halo mass relations for both red and blue groups matches well with those obtained from direct weak lensing measurements. These new halo mass estimates enable more accurate investigation of the galaxy-halo connection and the role of the halos in galaxy evolution.
description: 25 pages, 11 figures. Published by ApJ, comments welcome!
Dentilla curtiventris
Creators: name: Lelej, Arkady S.
name: Proshchalykin, Maxim Yu.
name: Maharramov, Mahir M.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mutillidae
Dentilla
Dentilla curtiventris

description: Dentilla curtiventris (André, 1901)
Dentilla cretica: Aliev & Lelej 1999: 46, ♀ (Azerbaijan).
Dentilla curtiventris: Lelej 2002: 51.
Material examined. Azerbaijan: Ordubad, 25. VI.2012, HA, 1♂; Julfa, Gazanchi, 39º13’N, 45º41’E, 1300 m, 26– 27.VII.2018, MP, HA, MM, 1♂; Shakhbuz, Kulus, 39º21’N, 45º37’E, 1395 m, 19. VI.2019, MP, HA, MM, 2♂; Kangarli, Chalkhangala, 39º25’N, 45º13’E, 1445 m, 25. VI.2020, MM, 2♂; Shakhbuz, Kulus, 39º22’N, 45º36’E, 1360 m, 19. VI.2020, MM, 3♂.
Distribution. Azerbaijan, Albania, Algeria, Armenia, Bulgaria, Egypt, Greece, Italy, North Macedonia, Serbia, Syria, Turkey.
description: Published as part of Lelej, Arkady S., Proshchalykin, Maxim Yu. & Maharramov, Mahir M., 2022, A review of the Mutillidae (Hymenoptera) of Azerbaijan, pp. 61-86 in Zootaxa 5155 (1) on page 70, DOI: 10.11646/zootaxa.5155.1.3, http://zenodo.org/record/6669410
Potentilla acaulis L. Sp. Pl.
Creators: name: Šída, Otakar
name: Böhmová, Alžběta
name: Rosenbaumová, Radka
name: Ducháček, Michal
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Rosales
Rosaceae
Potentilla
Potentilla acaulis

description: Potentilla acaulis L. Sp. Pl., 1: 500. 1753.
≡ P. subacaulis L. Syst. Nat., ed. 10, 2: 1065. 1759, nom. illeg. superfl.
Lectotype (designated here): ‘acaulis 22’ / ‘ Potentilla foliis ternatis mollibus incanis, caulibus vix uncialibus. Gmelin’ (PR 615688, plant mounted on the right part of the sheet!)
description: Published as part of Šída, Otakar, Böhmová, Alžběta, Rosenbaumová, Radka & Ducháček, Michal, 2024, Typification and interpretation of Potentilla acaulis L. (Rosaceae), pp. 237-246 in Phytotaxa 638 (3) on page 242, DOI: 10.11646/phytotaxa.638.3.3, http://zenodo.org/record/13213012
Additional file 6: of An evolutionarily conserved transcriptional response to viral infection in Caenorhabditis nematodes
Creators: name: Chen, Kevin
name: Franz, Carl
name: Hongbing Jiang
name: Yanfang Jiang
name: Wang, David
Publisher: name: Figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Confirmation of C. briggsae RNA-seq with qRT-PCR. Expression level from RNA-seq of JU1264 response genes to Santeuil virus infection was confirmed with qRT-PCR. qRT-PCR results were normalized to cbr-cdc-42 before calculating fold-change. (PDF 28 kb)
Additional file 4: of An evolutionarily conserved transcriptional response to viral infection in Caenorhabditis nematodes
Creators: name: Chen, Kevin
name: Franz, Carl
name: Hongbing Jiang
name: Yanfang Jiang
name: Wang, David
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Comparison of DEGs with previous publications. Venn diagrams showed the comparison of DEGs from our current study to previous published studies. A) Comparison of up-regulated DEGs from N. parisii [N2] infection. The most similar conditions from Bakowski et al. were used (8Â h and 16Â h post N. parisii infection). B) Comparison of up-regulated genes in N2 after Orsay virus infection between current study and Sarkies et al. C) Comparison between down-regulated genes in N2 after Orsay virus infection between current study and Sarkies et al. D) Comparison between up-regulated genes in rde-1 after Orsay virus infection between current study and Sarkies et al. E) Comparison between down-regulated genes in rde-1 after Orsay virus infection between current study and Sarkies et al. (PDF 462 kb)
Ionisation Calculations using Classical Molecular Dynamics
Creators: name: Plummer, Daniel
name: Svensson, Pontus
name: Gericke, Dirk O.
name: Hollebon, Patrick
name: Vinko, Sam M.
name: Gregori, Gianluca
Publisher: name: arXiv
Year: 2024
Subjects: subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: By performing an ensemble of molecular dynamics simulations, the model-dependent ionisation state is computed for strongly interacting systems self-consistently. This is accomplished through a free energy minimisation framework based on the technique of thermodynamic integration. To illustrate the method, two simple models applicable to partially ionised hydrogen plasma are presented in which pair potentials are employed between ions and neutral particles. Within the models, electrons are either bound in the hydrogen ground state or distributed in a uniform charge-neutralising background. Particular attention is given to the transition between atomic gas and ionised plasma, where the effect of neutral interactions is explored beyond commonly used models in the chemical picture. Furthermore, pressure ionisation is observed when short range repulsion effects are included between neutrals. The developed technique is general, and we discuss the applicability to a variety of molecular dynamics models for partially ionised warm dense matter.
description: 14 pages, 8 figures
Additional file 4: of An evolutionarily conserved transcriptional response to viral infection in Caenorhabditis nematodes
Creators: name: Chen, Kevin
name: Franz, Carl
name: Hongbing Jiang
name: Yanfang Jiang
name: Wang, David
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Comparison of DEGs with previous publications. Venn diagrams showed the comparison of DEGs from our current study to previous published studies. A) Comparison of up-regulated DEGs from N. parisii [N2] infection. The most similar conditions from Bakowski et al. were used (8Â h and 16Â h post N. parisii infection). B) Comparison of up-regulated genes in N2 after Orsay virus infection between current study and Sarkies et al. C) Comparison between down-regulated genes in N2 after Orsay virus infection between current study and Sarkies et al. D) Comparison between up-regulated genes in rde-1 after Orsay virus infection between current study and Sarkies et al. E) Comparison between down-regulated genes in rde-1 after Orsay virus infection between current study and Sarkies et al. (PDF 462 kb)
Additional file 1: of Genomic history of the origin and domestication of common bean unveils its closest sister species
Creators: name: Rendón-Anaya, Martha
name: Josaphat Montero-Vargas
name: Saburido-Álvarez, Soledad
name: Vlasova, Anna
name: Capella-Gutierrez, Salvador
name: Ordaz-Ortiz, José
name: O. Aguilar
name: Vianello-Brondani, Rosana
name: Santalla, Marta
name: Delaye, Luis
name: Gabaldón, Toni
name: Gepts, Paul
name: Winkler, Robert
name: Guigó, Roderic
name: Delgado-Salinas, Alfonso
name: Herrera-Estrella, Alfredo
Publisher: name: Figshare
Year: 2017
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 60506 Virology

description: Supplementary figures S1–S4 and S11–S21. (PDF 5628 kb)
Additional file 7: of Quantitative trait locus analysis of heterosis for plant height and ear height in an elite maize hybrid zhengdan 958 by design III
Creators: name: Hongjian Li
name: Qingsong Yang
name: Nannan Fan
name: Zhang, Ming
name: Huijie Zhai
name: Zhongfu Ni
name: Yirong Zhang
Publisher: name: Figshare
Year: 2017
Subjects: subject: Cell Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Plant Biology
subject: Virology

description: Comparison of QTLs for PH (plant height) and EH (ear height) with QTLs for ear-weight-related traits in our previous study. (DOC 3075 kb)
Additional file 4: Figure S1. of Changes in the Sclerotinia sclerotiorum transcriptome during infection of Brassica napus
Creators: name: Seifbarghi, Shirin
name: M. Borhan
name: Yangdou Wei
name: Coutu, Cathy
name: Robinson, Stephen
name: Hegedus, Dwayne
Publisher: name: Figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Clustering of differentially expressed genes based on expression patterns relative to time of inoculation (time 0). Increasing intensity indicates greater fold change (red = positive; green = negative) for individual genes. The expression of Sclerotinia sclerotiorum genes at various times during infection of Brassica napus were used for cluster analysis and a heat map was generated. (PDF 208 kb)
Dentilla erronea
Creators: name: Lelej, Arkady S.
name: Proshchalykin, Maxim Yu.
name: Maharramov, Mahir M.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mutillidae
Dentilla
Dentilla erronea

description: Dentilla erronea (André, 1900)
Dentilla erronea: Lelej 1985: 192, ♂, ♀; Özbek et al. 1999: 18.
Material examined. Azerbaijan: Kangarli, Chalkhangala, 39º25’N, 45º13’E, 1445 m, 17.VI.2020, MM, 1♂.
Distribution. Azerbaijan (new record), Albania, Algeria, Bulgaria, Greece, Italy, Turkey.
description: Published as part of Lelej, Arkady S., Proshchalykin, Maxim Yu. & Maharramov, Mahir M., 2022, A review of the Mutillidae (Hymenoptera) of Azerbaijan, pp. 61-86 in Zootaxa 5155 (1) on page 70, DOI: 10.11646/zootaxa.5155.1.3, http://zenodo.org/record/6669410
Additional file 7: of Quantitative trait locus analysis of heterosis for plant height and ear height in an elite maize hybrid zhengdan 958 by design III
Creators: name: Hongjian Li
name: Qingsong Yang
name: Nannan Fan
name: Zhang, Ming
name: Huijie Zhai
name: Zhongfu Ni
name: Yirong Zhang
Publisher: name: Figshare
Year: 2017
Subjects: subject: Cell Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Plant Biology
subject: 60506 Virology

description: Comparison of QTLs for PH (plant height) and EH (ear height) with QTLs for ear-weight-related traits in our previous study. (DOC 3075 kb)
Additional file 3: of An evolutionarily conserved transcriptional response to viral infection in Caenorhabditis nematodes
Creators: name: Chen, Kevin
name: Franz, Carl
name: Hongbing Jiang
name: Yanfang Jiang
name: Wang, David
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Plant Biology
subject: 60506 Virology

description: Confirmation of C. elegans RNA-seq with qRT-PCR. Expression of N2 response genes to Orsay virus infection with RNA-seq was confirmed with qRT-PCR. qRT-PCR results were normalized to cdc-42 before calculating fold-change. (PDF 29 kb)
Additional file 4: Figure S1. of Changes in the Sclerotinia sclerotiorum transcriptome during infection of Brassica napus
Creators: name: Seifbarghi, Shirin
name: M. Borhan
name: Yangdou Wei
name: Coutu, Cathy
name: Robinson, Stephen
name: Hegedus, Dwayne
Publisher: name: Figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology
subject: Computational Biology

description: Clustering of differentially expressed genes based on expression patterns relative to time of inoculation (time 0). Increasing intensity indicates greater fold change (red = positive; green = negative) for individual genes. The expression of Sclerotinia sclerotiorum genes at various times during infection of Brassica napus were used for cluster analysis and a heat map was generated. (PDF 208 kb)
Additional file 1: of Genomic history of the origin and domestication of common bean unveils its closest sister species
Creators: name: Rendón-Anaya, Martha
name: Josaphat Montero-Vargas
name: Saburido-Álvarez, Soledad
name: Vlasova, Anna
name: Capella-Gutierrez, Salvador
name: Ordaz-Ortiz, José
name: O. Aguilar
name: Vianello-Brondani, Rosana
name: Santalla, Marta
name: Delaye, Luis
name: Gabaldón, Toni
name: Gepts, Paul
name: Winkler, Robert
name: Guigó, Roderic
name: Delgado-Salinas, Alfonso
name: Herrera-Estrella, Alfredo
Publisher: name: Figshare
Year: 2017
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Virology

description: Supplementary figures S1–S4 and S11–S21. (PDF 5628 kb)
Dentilla persica
Creators: name: Lelej, Arkady S.
name: Proshchalykin, Maxim Yu.
name: Maharramov, Mahir M.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mutillidae
Dentilla
Dentilla persica

description: Dentilla persica (Sichel & Radoszkowski, 1870)
Dentilla persica: Lelej 1985: 193, ♂, ♀ (Azerbaijan); Aliev & Lelej 1999: 46, ♀, ♂ (Azerbaijan).
Material examined. Azerbaijan: Talysh Mts., Lerik, Pirasora, 6.VII.2012, Sh. Magerramova, 1♂; Apshron, Inzhirnaya, 20.VII.1991, HA, 1♀; 30 km E Baku, Mardakan, 22. VI.1985, V. Gorbatovskij, 1♀, 1♂; Apshron, Inzhirnaya, 24.VIII.1985, HA, 1♀; Kangarli, Chalkhangala, 39º25’N, 45º13’E, 1445 m, 30. VI.2021, MM, 1♂; Shakhbuz, 10.VII.1949, A. Bogachev, 1♀.
Distribution. Azerbaijan, Armenia, Greece, Iran, Israel, Turkey.
description: Published as part of Lelej, Arkady S., Proshchalykin, Maxim Yu. & Maharramov, Mahir M., 2022, A review of the Mutillidae (Hymenoptera) of Azerbaijan, pp. 61-86 in Zootaxa 5155 (1) on page 71, DOI: 10.11646/zootaxa.5155.1.3, http://zenodo.org/record/6669410
Additional file 2: of Genomic history of the origin and domestication of common bean unveils its closest sister species
Creators: name: Rendón-Anaya, Martha
name: Josaphat Montero-Vargas
name: Saburido-Álvarez, Soledad
name: Vlasova, Anna
name: Capella-Gutierrez, Salvador
name: Ordaz-Ortiz, José
name: O. Aguilar
name: Vianello-Brondani, Rosana
name: Santalla, Marta
name: Delaye, Luis
name: Gabaldón, Toni
name: Gepts, Paul
name: Winkler, Robert
name: Guigó, Roderic
name: Delgado-Salinas, Alfonso
name: Herrera-Estrella, Alfredo
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 60506 Virology

description: Tables S1–S3. Table S12 and Table S20. (PDF 175 kb)
Additional file 3: of An evolutionarily conserved transcriptional response to viral infection in Caenorhabditis nematodes
Creators: name: Chen, Kevin
name: Franz, Carl
name: Hongbing Jiang
name: Yanfang Jiang
name: Wang, David
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Confirmation of C. elegans RNA-seq with qRT-PCR. Expression of N2 response genes to Orsay virus infection with RNA-seq was confirmed with qRT-PCR. qRT-PCR results were normalized to cdc-42 before calculating fold-change. (PDF 29 kb)
Design of Restricted Normalizing Flow towards Arbitrary Stochastic Policy with Computational Efficiency
Creators: name: Kobayashi, Taisuke
name: Aotani, Takumi
Publisher: name: arXiv
Year: 2024
Subjects: subject: Robotics (cs.RO)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: This paper proposes a new design method for a stochastic control policy using a normalizing flow (NF). In reinforcement learning (RL), the policy is usually modeled as a distribution model with trainable parameters. When this parameterization has less expressiveness, it would fail to acquiring the optimal policy. A mixture model has capability of a universal approximation, but it with too much redundancy increases the computational cost, which can become a bottleneck when considering the use of real-time robot control. As another approach, NF, which is with additional parameters for invertible transformation from a simple stochastic model as a base, is expected to exert high expressiveness and lower computational cost. However, NF cannot compute its mean analytically due to complexity of the invertible transformation, and it lacks reliability because it retains stochastic behaviors after deployment for robot controller. This paper therefore designs a restricted NF (RNF) that achieves an analytic mean by appropriately restricting the invertible transformation. In addition, the expressiveness impaired by this restriction is regained using bimodal student-t distribution as its base, so-called Bit-RNF. In RL benchmarks, Bit-RNF policy outperformed the previous models. Finally, a real robot experiment demonstrated the applicability of Bit-RNF policy to real world. The attached video is uploaded on youtube: https://youtu.be/R_GJVZDW9bk
description: 27 pages, 13 figures
Dentilla ursina
Creators: name: Lelej, Arkady S.
name: Proshchalykin, Maxim Yu.
name: Maharramov, Mahir M.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mutillidae
Dentilla
Dentilla ursina

description: Dentilla ursina (Nagy, 1972)
Dentilla ursina: Lelej 1985: 191, ♀ (Azerbaijan).
Material examined. No specimens have been examined.
Distribution. Azerbaijan, Turkey.
description: Published as part of Lelej, Arkady S., Proshchalykin, Maxim Yu. & Maharramov, Mahir M., 2022, A review of the Mutillidae (Hymenoptera) of Azerbaijan, pp. 61-86 in Zootaxa 5155 (1) on page 71, DOI: 10.11646/zootaxa.5155.1.3, http://zenodo.org/record/6669410
Additional file 4: of Quantitative trait locus analysis of heterosis for plant height and ear height in an elite maize hybrid zhengdan 958 by design III
Creators: name: Hongjian Li
name: Qingsong Yang
name: Nannan Fan
name: Zhang, Ming
name: Huijie Zhai
name: Zhongfu Ni
name: Yirong Zhang
Publisher: name: Figshare
Year: 2017
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Ecology
subject: Developmental Biology
subject: Plant Biology

description: The genetic linkage map before and after encryption of qPH.A-1.3 region. (DOC 663 kb)
Callindra nepos
Creators: name: Singh, Navneet
name: Joshi, Rahul
name: Kirti, Jagbir Singh
name: Bisht, Santosh Singh
name: Param, Harsimranjeet Singh
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Arctiidae
Callindra
Callindra nepos

description: 31. Callindra nepos (Leech, 1899): 166
= Callimorpha eques Reich, 1932: 234
Type locality: Chia-ting-fu [Western China, Sichuan]
Distribution: Eastern India [North East India] (Dubatolov 2010).
description: Published as part of Singh, Navneet, Joshi, Rahul, Kirti, Jagbir Singh, Bisht, Santosh Singh & Param, Harsimranjeet Singh, 2021, A catalogue of Indian Arctiinae (Erebidae, Lepidoptera), pp. 1-118 in Zootaxa 5058 (1) on page 21, DOI: 10.11646/zootaxa.5058.1.1, http://zenodo.org/record/5602576
Nemka Lelej 1985
Creators: name: Lelej, Arkady S.
name: Proshchalykin, Maxim Yu.
name: Maharramov, Mahir M.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mutillidae
Nemka

description: 9. Genus Nemka Lelej, 1985
Type species: Mutilla viduata Pallas, 1773, ♂, by original designation.
Eighteen species are recognized mainly from the Oriental Region, four species and five subspecies of this genus occur in the Palaearctic Region (Pagliano et al. 2020). One widespread Mediterranean species with two subspecies is distributed in Azerbaijan.
description: Published as part of Lelej, Arkady S., Proshchalykin, Maxim Yu. & Maharramov, Mahir M., 2022, A review of the Mutillidae (Hymenoptera) of Azerbaijan, pp. 61-86 in Zootaxa 5155 (1) on page 71, DOI: 10.11646/zootaxa.5155.1.3, http://zenodo.org/record/6669410
Nemka viduata subsp. viduata
Creators: name: Lelej, Arkady S.
name: Proshchalykin, Maxim Yu.
name: Maharramov, Mahir M.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mutillidae
Nemka
Nemka viduata
Nemka viduata viduata (pallas, 1773)

description: Nemka viduata viduata (Pallas, 1773)
Nemka viduata viduata: Aliev & Lelej 1999: 48, ♀, ♂ (Azerbaijan).
Material examined. Azerbaijan: Baku, Inzhirnaya, 22–24.VII.1988, S. Storozhenko, 1♀; Kusarchai mouth, 22.VII.1988, V. Gorbatovskij, 2♀.
Distribution. Azerbaijan, Albania, Armenia, Austria, Bosnia and Herzegovina, Bulgaria, China (Xingjiang), Czechia, France, Georgia, Germany, Greece, Hungary, Italy, Kazakhstan, North Macedonia, Malta, Mongolia, Morocco, Romania, Russia (European part, Urals, Western Siberia), Serbia, Slovakia, Slovenia, Spain, Syria, Turkey, Ukraine.
description: Published as part of Lelej, Arkady S., Proshchalykin, Maxim Yu. & Maharramov, Mahir M., 2022, A review of the Mutillidae (Hymenoptera) of Azerbaijan, pp. 61-86 in Zootaxa 5155 (1) on page 71, DOI: 10.11646/zootaxa.5155.1.3, http://zenodo.org/record/6669410
Additional file 7: Figure S3. of Patterns of cross-contamination in a multispecies population genomic project: detection, quantification, impact, and solutions
Creators: name: Ballenghien, Marion
name: Faivre, Nicolas
name: Galtier, Nicolas
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Hematology
subject: Plant Biology

description: Homo-quartet analysis of contamination between shipments. See legend to Fig.Â 1. Here we assume that Ind1 and Ind2 have been shipped together on a date different from the shipment date of Ind3 and Ind4. We want to specifically assess the prevalence of contamination between individuals shipped at different dates. Here, Pos4 is not considered because the {Ind1, Ind2} group is not monoallelic, so that contamination could involve two individuals shipped together. Only Pos5 is identified as a candidate for between-shipment contamination. (PDF 27 kb)
Additional file 1: of An evolutionarily conserved transcriptional response to viral infection in Caenorhabditis nematodes
Creators: name: Chen, Kevin
name: Franz, Carl
name: Hongbing Jiang
name: Yanfang Jiang
name: Wang, David
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Heatmap of differentially expressed genes upon pathogen infections. The heatmap showed the expression level for all of the differentially expressed genes in the three infection conditions (Orsay virus [N2], Orsay virus [rde-1], and N. parisii [N2]). A) Log2 CPM of each gene presented. B) Median normalized Log2 CPM of each gene. Each CPM value was normalized to the median CPM for the given gene. Each experimental condition had three replicates and each replicate was represented in a column. Samples that did not have measurable expression were grey. (PDF 1297 kb)
Nemka viduata subsp. bartholomaei
Creators: name: Lelej, Arkady S.
name: Proshchalykin, Maxim Yu.
name: Maharramov, Mahir M.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mutillidae
Nemka
Nemka viduata
Nemka viduata bartholomaei (radoszkowski, 1865)

description: Nemka viduata bartholomaei (Radoszkowski, 1865)
Nemka viduata luctuosa: Aliev & Lelej 1999: 48, ♀, ♂ (Azerbaijan).
Nemka viduata bartholomaei: Lelej 2002: 56 (Azerbaijan).
Material examined. Azerbaijan: Apshron, Inzhirnaya, 20. VI.1993, HA, 1♂; Agdash, Turianchay, 6.VIII.1994, HA, 1♂; Apshron, Kizil-Dash, 28.VIII.2002, HA, 1♀; Babek, Sirab, 39º18’N, 45º32’E, 1245 m, 22. VI.2012, HA, 1♂; Shakhbuz, Zarnatun, 39º31’N, 45º46’E, 1550 m, 14, 18. VI.2019, MP, HA, MM, 2♂; Babek, Sirab, 39º18’N, 45º32’E, 1250 m, 19, 21. VI.2019, MP, HA, MM, 2♂; Julfa, Daridagh, 38º59’N, 45º40’E, 900 m, 17, 20. VI.2019, MP, HA, MM, 2♂; 9 km N Julfa, 39º02’N, 45º36’E, 900 m, 16. VI.2019, MP, HA, MM, 1♂; Sahkhbuz, 39º22’N, 45º35’E, 1313 m, 27. VI –14.VII.2016, MM, 6♂; same place, 30.VII.2018, MP, HA, MM, 1♀; Shakhbuz, Salasuz, 39º20’N, 45º45’E, 1125 m, 23.VII.2018, MP, HA, MM, 1♂, 1♀; Shakhbuz, Kulus, 39º22’N, 45º36’E, 1360 m, 19. VI.2020, MM, 1♀; Julfa, Gulistan, 38º58’N, 45º36’E, 740 m, 26.VII.2018, MP, HA, MM, 1♂.
Distribution. Azerbaijan, Armenia, China (Xinjiang), Georgia, Iran (north), Kazakhstan (south), Kyrgyzstan, Turkey, Turkmenistan, Uzbekistan.
description: Published as part of Lelej, Arkady S., Proshchalykin, Maxim Yu. & Maharramov, Mahir M., 2022, A review of the Mutillidae (Hymenoptera) of Azerbaijan, pp. 61-86 in Zootaxa 5155 (1) on pages 71-72, DOI: 10.11646/zootaxa.5155.1.3, http://zenodo.org/record/6669410
Additional file 1: of Assessing environmental factors associated with regional schistosomiasis prevalence in Anhui Province, Peoplesâ   Republic of China using a geographical detector method
Creators: name: Hu, Yi
name: Congcong Xia
name: Shizhu Li
name: Ward, Michael
name: Luo, Can
name: Fenghua Gao
name: Qizhi Wang
name: Shiqing Zhang
name: Zhijie Zhang
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Multilingual abstracts in the six official working languages of the United Nations. (PDF 411 kb)
Studying power-grid synchronization with incremental refinement of model heterogeneity
Creators: name: Hartmann, Bálint
name: Ódor, Géza
name: Benedek, Kristóf
name: Papp, István
Publisher: name: arXiv
Year: 2024
Subjects: subject: Adaptation and Self-Organizing Systems (nlin.AO)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Physics and Society (physics.soc-ph)
subject: FOS: Physical sciences

description: Modeling power-grid systems has got a major importance in present days as transformation to renewable energy sources requires the complete re-design of energy transmission. Renewable energy sources can be located quite far from their consumption points because urban and industrial structures do not follow physical constraints and capabilities. Important examples are the sea coast vs inland divisions in the case of wind power. Ill-constructed high-voltage (HV) power grids can cause catastrophic damages to economies as it was demonstrated in recent history via the emergence of large blackout events. The probability distributions of such events was found to be fat-tailed, exhibiting power-law (PL) tails very often. To understand them, self-organized critical direct current (DC) models have been constructed~\cite{car2} and have been shown to describe well the PL exponents of empirical values. However, many details could not be understood as power-grids work with alternating currents (AC) in which phase differences are the primary causes of the power-flows.
description: 9 pages, 11 figures, major revision of the previous version
Manipontonia psamathe De Man 1902, comb. nov.
Creators: name: Bruce, A. J.
name: Okuno, J.
name: Li, Xinzheng
Publisher: name: Zenodo
Year: 2005
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Palaemonidae
Manipontonia
Manipontonia psamathe

description: Manipontonia psamathe (De Man, 1902) comb. nov.
Restricted synonymy
Urocaris psamathe De Man, 1902: 816 –822, pl. 25 figs 51, 51a– i. 51, 51a–i. Borradaile, 1917: 354.
Periclimenes (Ancylocaris) psamathe Kemp, 1922: 173.
Periclimenes (Harpilius) psamathe Holthuis, 1952: 61, fig. 23. Monod, 1976: 1422, figs 1–28.
Periclimenes psamathe Bruce, 1966: 21, figs 1c, 2cd; 1970: 541–543, fig. 3; 1978: 218–221, fig. 7. Li, 2000: 229–230, fig. 304 (full synonymy).
description: Published as part of Bruce, A. J., Okuno, J. & Li, Xinzheng, 2005, Manipontonia gen. nov., a new pontoniine shrimp genus for Periclimenes psamathe (De Man) (Crustacea: Decapoda: Palaemonidae), pp. 1-11 in Zootaxa 926 on page 6, DOI: 10.5281/zenodo.171104
Additional file 6: of Evolutionary origin and function of NOX4-art, an arthropod specific NADPH oxidase
Creators: name: Gandara, Ana
name: Torres, André
name: Bahia, Ana
name: Oliveira, Pedro
name: Schama, Renata
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Alignment of NOX4/NOX4-art genes organized by taxonomic group. Important regions and residues are highlighted in different colors: green – transmembrane regions; black – heme binding histidines; grey – loops between transmembranes; cyan – different important residues; magenta – FAD binding regions; orange – NADPH binding regions; yellow – C-terminal region. (PDF 3860 kb)
Additional file 1: of An evolutionarily conserved transcriptional response to viral infection in Caenorhabditis nematodes
Creators: name: Chen, Kevin
name: Franz, Carl
name: Hongbing Jiang
name: Yanfang Jiang
name: Wang, David
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology
subject: Computational Biology

description: Heatmap of differentially expressed genes upon pathogen infections. The heatmap showed the expression level for all of the differentially expressed genes in the three infection conditions (Orsay virus [N2], Orsay virus [rde-1], and N. parisii [N2]). A) Log2 CPM of each gene presented. B) Median normalized Log2 CPM of each gene. Each CPM value was normalized to the median CPM for the given gene. Each experimental condition had three replicates and each replicate was represented in a column. Samples that did not have measurable expression were grey. (PDF 1297 kb)