cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
What can machine learning do? Implications for citizen scientists
Creators: name: Gander, Anna Jia
name: Ponti, Marisa
name: Seredko, Alena
Publisher: name: Zenodo
Year: 2021
Subjects: citizen science; classification; function allocation; heteromation; human-machine integration; machine learning.

description: Citizen science projects set up in research fields such as astronomy, ecology and biodiversity, biology, and neuroimaging produce large datasets; thus they hold promise for applying artificial intelligence for the social and environmental spheres. Human-machine integration in citizen science can harness the contributions of many human observers and use machine learning (ML) to process their contributed data. Several citizen science projects have designed complex human-machine systems, taking advantage of the complementarity of the strengths of humans and machines, and aiming to optimize for efficiency and human engagement. Using document analysis of 12 citizen science projects deploying ML techniques to optimize classification tasks, we describe the distribution of work between citizens and researchers and between humans and algorithms, as well as configurations of human-in-the-loop. The results indicate that experts are involved in every aspect of the loop, from annotating or labeling data to giving them to algorithms to train and make decisions from such predictions. Experts also test and validate models to improve accuracy by scoring their outputs when algorithms are not able to make the right decisions. While experts are the humans mainly involved in the loop, citizens are also involved at various stages of the process. We present three main examples of citizens-in-the-loop: (a) when algorithms provide incorrect suggestions; (b) when algorithms do not know to perform classification, and (c) when algorithms are active learners. We contend that, unlike automated systems that tend to remove or reduce the need for humans, the examined projects are heteromated systems that do not function without the indispensable human mediation of engaged citizens.
Gnathisotoma deharvengi Najt 1981
Creators: name: Thibaud, Jean-Marc
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Isotomidae
Gnathisotoma
Gnathisotoma deharvengi

description: Gnathisotoma deharvengi Najt, 1981
Gnathisotoma deharvengi Najt, 1981b: 424.
DISTRIBUTION. — Hautes-Pyrénées. Canigou, cirquede Cortalet (Najt 1981b).
description: Published as part of Thibaud, Jean-Marc, 2017, Catalogue des collemboles de France, pp. 297-436 in Zoosystema 39 (3) on page 357, DOI: 10.5252/z2017n3a1, http://zenodo.org/record/5496272
Laser spot measurement using cost-affordable devices
Creators: name: Del Alamo, M. Bonnett
name: Soncco, C.
name: Helaconde, R.
name: Bazo, J.
name: Gago, A. M.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We have designed and tested an automated simple setup for quickly measuring the profile and spot size of a Gaussian laser beam using three cost-affordable light sensors. Two profiling techniques were implemented: imaging for the CMOS 2D array (webcam) and scanning knife-edge-like using a single photodiode and an LDR. The methods and sensors were compared to determine their accuracy using lasers of two different wavelengths and technologies. We verify that it is possible to use a low-cost webcam to determine the profile of a laser with 1% uncertainty on the beam waist, 1.5% error on the waistline position, and less than 3% error in determining the minimum spot radius. The photodiode measurement is the most stable since it is not affected by the change in laser intensity. In addition, we show that it is possible to use an inexpensive LDR sensor to estimate the laser spot size with an 11% error.
description: 18 pages, 9 figures
Halisotoma boneti
Creators: name: Thibaud, Jean-Marc
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Isotomidae
Halisotoma
Halisotoma boneti

description: Halisotoma boneti (Delamare Deboutteville, 1953) *
Isotoma boneti Delamare Deboutteville, 1953: 313.
Halisotoma boneti – Potapov 2001: 273.
DISTRIBUTION. — Pyrénées-Orientales. Plage de Banyuls-sur-Mer (Delamare Deboutteville 1953, 1954).
description: Published as part of Thibaud, Jean-Marc, 2017, Catalogue des collemboles de France, pp. 297-436 in Zoosystema 39 (3) on page 357, DOI: 10.5252/z2017n3a1, http://zenodo.org/record/5496272
Algebras, graphs and thetas
Creators: name: Silva, Marcel K. de Carli
name: Coutinho, Gabriel
name: Godsil, Chris
name: Roberson, David E.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: 05C50, 05E30, 90C22

description: We extend the clique-coclique inequality, previously known to hold for graphs in association schemes and vertex-transitive graphs, to graphs in homogeneous coherent configurations and 1-walk regular graphs. We further generalize it to a stronger inequality involving the Lovász theta number of such graphs, and some theta variants, including characterizations of the equality.
description: A version of this paper is published on the proceedings of LAGOS 2019
Halisotoma maritima
Creators: name: Thibaud, Jean-Marc
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Isotomidae
Halisotoma
Halisotoma maritima

description: Halisotoma maritima (Tullberg, 1871) *
Isotoma maritima Tullberg, 1871: 151.
Halisotoma maritima – Bagnall 1949a: 85.
DISTRIBUTION. — Camargue. Poinsot 1972b.
Corse. Calvi (Cassagnau 1954b).
Pas-de-Calais. Le Portel (Moniez 1890a).
Puy-de-Dôme. Cascadedu Saut-du-Loup au Mont-Dore (Delamare Deboutteville 1950c).
Pyrénées Orientales. Plage du Trocprès de Banyuls-sur-Mer (Angelier 1947).
TAXONOMIE. — Moniez 1890b (redescription); Poinsot 1972b (redescription).
description: Published as part of Thibaud, Jean-Marc, 2017, Catalogue des collemboles de France, pp. 297-436 in Zoosystema 39 (3) on page 357, DOI: 10.5252/z2017n3a1, http://zenodo.org/record/5496272
MOESM1 of Spatiotemporal clusters of HIV/AIDS infections caused by drug use and heterosexual contact in Ruili city, China 1989â 2016
Creators: name: Jiang, Li
name: Li, Zhoulin
name: Huang, Jin
name: Liu, Bang
name: Yang, Yingbo
name: Lin, Lanzhu
name: Wang, Chengbo
name: Xie, Ximei
name: Peng, Xia
name: Xu, Wen
name: Li, Hong
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Computational Biology

description: Additional file 1: Table S1. Spatial and temporal cluster of HIV /AIDS by different drug use transmission routes in Ruili, 1989â 2016, using different percent of the population at risk. Table S2. Spatial and temporal cluster of HIV /AIDS by different heterosexual contact transmission routes in Ruili, 1989â 2016, using different percent of the population at risk.
Evidence for an asymptotic giant branch star in the progenitor system of a type Ia supernova
Creators: name: Hamuy, Mario
name: Phillips, M. M.
name: Suntzeff, Nicholas B.
name: Maza, Jose
name: Gonzalez, L. E.
name: Roth, Miguel
name: Krisciunas, Kevin
name: Morrell, Nidia
name: Green, E. M.
name: Persson, S. E.
name: McCarthy, P. J.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: A type Ia supernova (SN Ia), one of the two main classes of exploding stars, is recognized by the absence of hydrogen and the presence of elements such as silicon and sulphur in its spectra. These explosions are thought to produce the majority of iron-peak elements in the universe and are known to be precise "standard candles" used to measure distances to galaxies. While there is general agreement that SNe Ia are exploding white dwarfs, astronomers face the embarassing problem that the progenitor systems have never been directly observed. Significant effort has been put into the detection of circum-stellar material (CSM) in order to discriminate between the different types of possible progenitors systems, yet no CSM has been found. Here we report optical observations of SN 2002ic which reveal large amounts of CSM seen as a strong hydrogen emission. This observation suggests that the progenitor system contained a massive asymptotic branch giant star which lost a few solar masses of hydrogen-rich gas prior to the type Ia explosion.
description: accepted by Nature (subject to embargo policy), 15 pages, 5 figures, photometry and spectroscopy are available at http://www.ociw.edu/~mhamuy/SNe/
Sensitivity analysis in archaeological simulation: An application to the MERCURY model
Creators: name: Kanters, Hilde
name: Brughmans, Tom
name: Romanowska, Iza
Publisher: name: Zenodo
Year: 2021
Subjects: simulation
agent-based modelling
network science
sensitivity analysis
roman
archaeology
ceramics

description: Supplementary files to the following publication: Hilde Kanters, Tom Brughmans, Iza Romanowska, 2021. Sensitivity analysis in archaeological simulation: An application to the MERCURY model. Journal of Archaeological Science: Reports. The data_analysis_script_MERCURY folder contains the Jupyter Notebook file with the script we used to do our sensitivity analysis, and an archive containing the data. The data_analysis_script_general folder contains a Jupyter Notebook file with a script template others can use for their sensitivity analysis, as well as a dummy data file needed to show the script. The source_code folder contains the Repast Simphony code of the MERCURY model we used for our sensitivity analysis, and a readme file explaining how to run the model.
Finite-Size Corrections for Coulomb Systems in the Debye-Huckel Regime
Creators: name: Torres, Aldemar
name: Tellez, Gabriel
Publisher: name: arXiv
Year: 2003
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: It has been argued that for a finite two-dimensional classical Coulomb system of characteristic size $R$, in its conducting phase, as $R\to \infty $ the total free energy (times the inverse temperature $β$) admits an expansion of the form: $βF=AR^{2}+BR+{1/6}χ\ln R,$ where $χ$ is the Euler characteristic of the manifold where the system lives. The first two terms represent the bulk free energy and the surface free energy respectively. The coefficients $A$ and $B$ are non-universal but the coefficient of $\ln R$ is universal: it does not depend on the detail of the microscopic constitution of the system (particle densities, temperature, etc...). By doing the usual Legendre transform this universal finite-size correction is also present in the grand potential. The explicit form of the expansion has been checked for some exactly solvable models for a special value of the coulombic coupling. In this paper we present a method to obtain these finite-size corrections at the Debye--Hückel regime. It is based on the sine-Gordon field theory to find an expression for the grand canonical partition function in terms of the spectrum of the Laplace operator. As examples we find explicitly the grand potential expansion for a Coulomb system confined in a disk and in an annulus with ideal conductor walls.
description: v1: 14 pages, v2: 20 pages, added a new appendix (appendix B)
Hemisotoma orientalis
Creators: name: Thibaud, Jean-Marc
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Isotomidae
Hemisotoma
Hemisotoma orientalis

description: Hemisotoma orientalis (Stach, 1947)
Isotomina orientalis Stach, 1947: 275.
Cryptopygus orientalis – Potapov 2001: 107.
Hemisotoma orientalis – in Bellinger et al. 1996 -2016.
DISTRIBUTION. — Bouches-du-Rhône. Camargue, dunesde Beynes, eaux saumâtres (Poinsot 1965, 1966b).
Morbihan. Sableslittoraux, plages (Thibaud 2006).
TAXONOMIE. — Poinsot 1966b (redescription).
ÉCOLOGIE. — Poinsot 1965, 1966b.
description: Published as part of Thibaud, Jean-Marc, 2017, Catalogue des collemboles de France, pp. 297-436 in Zoosystema 39 (3) on page 357, DOI: 10.5252/z2017n3a1, http://zenodo.org/record/5496272
Hoplitimyia James 1934
Creators: name: Woodley, Norman E.
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Stratiomyidae
Hoplitimyia

description: Genus Hoplitimyia James
 Hoplitimyia James, 1934: 443. Type species, Stratiomys constans Loew, by original designation.
 Remarks. Hoplitimyia is a distinctive genus of soldier flies similar to Stratiomys Geoffroy, but its species are generally smaller and slightly more slender in general habitus. The genus ranges from the southern United States south to Argentina. All of the species resemble dark vespoid, particularly polybiine, wasps in having elongate antennae and a dark costal region of the wing. They differ from Stratiomys in having the face rounded in lateral view, and having the antennal flagellum spindle-shaped rather than cylindrical. There are ten described species that are considered valid (Woodley, 2001), but it is likely that additional synonymies exist because the species have been defined by color patterns that are quite variable in at least some of the species.
description: Published as part of Woodley, Norman E., 2008, Two new Stratiomyinae, including Panamamyia gen. nov., from the Neotropical Region (Diptera: Stratiomyidae), pp. 29-39 in Zootaxa 1701 (1) on page 30, DOI: 10.11646/zootaxa.1701.1.3, http://zenodo.org/record/5107268
Ab initio study of the phase diagram of epitaxial BaTiO3
Creators: name: Dieguez, Oswaldo
name: Tinte, Silvia
name: Antons, A.
name: Bungaro, Claudia
name: Neaton, J. B.
name: Rabe, Karin M.
name: Vanderbilt, David
Publisher: name: arXiv
Year: 2004
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Using a combination of first-principles and effective-Hamiltonian approaches, we map out the structure of BaTiO3 under epitaxial constraints applicable to growth on perovskite substrates. We obtain a phase diagram in temperature and misfit strain that is qualitatively different from that reported by Pertsev et al. [Phys. Rev. Lett. 80, 1988 (1998)], who based their results on an empirical thermodynamic potential with parameters fitted at temperatures in the vicinity of the bulk phase transitions. In particular, we find a region of `r phase' at low temperature where Pertsev et al. have reported an `ac phase'. We expect our results to be relevant to thin epitaxial films of BaTiO3 at low temperatures and experimentally-achievable strains.
description: 4 pages, with 4 postscript figures embedded. Uses REVTEX and epsf macros. Also available at http://www.physics.rutgers.edu/~dhv/preprints/od_epi/index.html
A formula for the number of tilings of an octagon by rhombi
Creators: name: Destainville, N.
name: Mosseri, R.
name: Bailly, F.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Combinatorics (math.CO)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Mathematics
subject: FOS: Physical sciences

description: We propose the first algebraic determinantal formula to enumerate tilings of a centro-symmetric octagon of any size by rhombi. This result uses the Gessel-Viennot technique and generalizes to any octagon a formula given by Elnitsky in a special case.
description: New title. Minor improvements. To appear in Theoretical Computer Science, special issue on "Combinatorics of the Discrete Plane and Tilings"
Additional file 1 of Development of a radiomics model to diagnose pheochromocytoma preoperatively: a multicenter study with prospective validation
Creators: name: Kong, Jianqiu
name: Zheng, Junjiong
name: Wu, Jieying
name: Wu, Shaoxu
name: Cai, Jinhua
name: Diao, Xiayao
name: Xie, Weibin
name: Chen, Xiong
name: Yu, Hao
name: Huang, Lifang
name: Fang, Hongpeng
name: Fan, Xinxiang
name: Qin, Haide
name: Li, Yong
name: Wu, Zhuo
name: Huang, Jian
name: Lin, Tianxin
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Hematology

description: Additional file 1: Fig. S1. Recruitment pathways. Fig. S2. Receiver operating characteristic analysis (A–C) and decision curve analysis (D–F) of radiomic-clinical nomogram model and clinical model in the training set, internal validation set, and external validation set, respectively. Fig. S3. Performance of the radiomics signature and radiomic-clinical model in the prospective validation set. (A) ROC curve of the radiomics signature in the prospective validation set. (B) Boxplots of the radiomics score in the prospective validation set. (C) ROC curve of the radiomic-clinical nomogram in the prospective validation set. Table S1. The clinical data of the prospective validation set. Table S2. Stratified analysis of the association between the radiomics signature and the pathological characteristics of adrenal lesions in the combined training, internal validation and external validation sets. Table S3. Stratified analysis of the association between the radiomics signature and MRI parameters in all enrolled patients.
The Parsec-Scale Structure and Jet Motions of the TeV Blazars 1ES 1959+650, PKS 2155-304, and 1ES 2344+514
Creators: name: Piner, B. Glenn
name: Edwards, Philip G.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: As part of our study of the VLBI properties of TeV blazar jets, we present here a series of high-resolution 15 GHz Very Long Baseline Array (VLBA) images of the parsec-scale jets of the TeV blazars 1ES 1959+650, PKS 2155-304, and 1ES 2344+514, with linear resolutions of about 0.5 pc. Each of these sources was observed with the VLBA at three or four epochs during 1999 and 2000. There is a notable lack of any strong moving components on the VLBI images (in contrast to the rapid superluminal motions seen in EGRET blazars), and the structure of the VLBI jet can be modeled either as a series of stationary Gaussian components, or as a smooth power law for two of the sources (PKS 2155-304 and 1ES 2344+514). The low apparent speeds, together with beaming indicators such as the brightness temperature of the VLBI core, imply only modest Doppler boosting of the VLBI radio emission, and only modest bulk Lorentz factors; in contrast to the more extreme values of these parameters invoked to explain the high-energy emission. The fact that no moving shocks or plasmoids are seen on the parsec-scale suggests that the shocks or plasmoids that are assumed to be responsible for the high-energy flares must dissipate before they separate from the core on the VLBI images. This requires the loss of a substantial amount of bulk kinetic energy on parsec scales, and implies a higher efficiency than is typically assumed for internal shock scenarios.
description: 14 pages, Accepted to ApJ
Additional file 8 of Fluorescent amplification for next generation sequencing (FA-NGS) library preparation
Creators: name: Chiniquy, Jennifer
name: Garber, Megan
name: Aindrila Mukhopadhyay
name: Hillson, Nathan
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: Plant Biology
subject: Computational Biology

description: Additional file 8: Figure S8. Percent difference from sequence pooling of Nextera and AL libraries: The frequency of percent differences from the expected percent reads per sample (1.04) is represented as a histogram for the Nextera library (A), AL library (B)
A formalism for magnon gravitational wave detectors
Creators: name: Ito, Asuka
name: Soda, Jiro
Publisher: name: arXiv
Year: 2020
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In order to detect high frequency gravitational waves, we need a new detection method. In this paper, we develop a formalism for a gravitational wave detector using magnons in a cavity. Using Fermi normal coordinates and taking the non-relativistic limit, we obtain a Hamiltonian for magnons in gravitational wave backgrounds. Given the Hamiltonian, we show how to use the magnons for detecting high frequency gravitational waves. Furthermore, as a demonstration of the magnon gravitational wave detector, we give upper limits on GHz gravitational waves by utilizing known results of magnon experiments for an axion dark matter search.
description: 33 pages, 2 figures, minor changes
Non-local order parameters for states with topological electromagnetic response
Creators: name: Kvorning, Thomas Klein
name: Spånslätt, Christian
name: Chan, AtMa P. O.
name: Ryu, Shinsei
Publisher: name: arXiv
Year: 2019
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Chern insulators are states of matter characterized by a quantized Hall conductance, gapless edge modes but also a singular response to monopole configurations of an external electromagnetic field. In this paper, we describe the nature of such a singular response and show how it can be used to define a class of operators acting as non-local order parameters. These operators characterize the Chern-insulator states in the following way: for a given state, there exists a corresponding operator which has an algebraically decaying two-point function in that particular state, while it decays exponentially in all other states. The behaviour of the order parameter is defined only in terms of the electromagnetic response, and not from any microscopic properties, and we therefore claim to have found a generic order parameter for the Chern insulating states. We support this claim by numerically evaluating the order parameters for different insulating states. We also show how our construction can be generalized to other states with topological electromagnetic response, and use the states with a quantized magnetoelectric effect in three dimensions as an example. Besides providing novel insights into topological states of matter, our construction can be exploited to efficiently diagnose such states numerically.
description: 12 pages, 3 figures
A search for H2 around pre-main-sequence stars
Creators: name: Sheret, I.
name: Howat, S. K. Ramsay
name: Dent, W. R. F.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present the results of a search for pure rotational molecular hydrogen emission from two pre-main-sequence stars, AB Aur and CQ Tau. Observations were made using MICHELLE, the mid-IR echelle spectrometer at the UK Infrared Telescope. We found some evidence for emission in the J = 4 --> 2 line in AB Aur, but no J = 3 --> 1 line from either star. We derive upper limits on line flux which are significantly smaller than previous line flux estimates based on ISO observations. This suggests that the emission detected by ISO is extended on scales of at least 6 arcsec, and does not come from the disk as previously thought.
description: 5 pages, accepted for publication in MNRAS
Restoring ancient text using deep learning: a case study on Greek epigraphy
Creators: name: Assael, Yannis
name: Sommerschield, Thea
name: Prag, Jonathan
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computation and Language (cs.CL)
subject: Computers and Society (cs.CY)
subject: FOS: Computer and information sciences

description: Ancient history relies on disciplines such as epigraphy, the study of ancient inscribed texts, for evidence of the recorded past. However, these texts, "inscriptions", are often damaged over the centuries, and illegible parts of the text must be restored by specialists, known as epigraphists. This work presents Pythia, the first ancient text restoration model that recovers missing characters from a damaged text input using deep neural networks. Its architecture is carefully designed to handle long-term context information, and deal efficiently with missing or corrupted character and word representations. To train it, we wrote a non-trivial pipeline to convert PHI, the largest digital corpus of ancient Greek inscriptions, to machine actionable text, which we call PHI-ML. On PHI-ML, Pythia's predictions achieve a 30.1% character error rate, compared to the 57.3% of human epigraphists. Moreover, in 73.5% of cases the ground-truth sequence was among the Top-20 hypotheses of Pythia, which effectively demonstrates the impact of this assistive method on the field of digital epigraphy, and sets the state-of-the-art in ancient text restoration.
Hemisotoma pontica
Creators: name: Thibaud, Jean-Marc
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Isotomidae
Hemisotoma
Hemisotoma pontica

description: Hemisotoma pontica (Stach, 1947)
Isotomina pontica Stach, 1947: 267.
Cryptopygus ponticus – Potapov 2001: 108.
Hemisotoma pontica – Kahrarian & Arbea 2013: 92.
DISTRIBUTION. — Bouches-du-Rhône. Boisdes Riègesen Camargue (Delamare Deboutteville 1948b; Poinsot 1972b).
TAXONOMIE. — Delamare Deboutteville 1948b (redescription); Poinsot 1972b (redescription).
description: Published as part of Thibaud, Jean-Marc, 2017, Catalogue des collemboles de France, pp. 297-436 in Zoosystema 39 (3) on page 357, DOI: 10.5252/z2017n3a1, http://zenodo.org/record/5496272
Excitations and Quantum Fluctuations in Site Diluted Two-Dimensional Antiferromagnets
Creators: name: Mucciolo, Eduardo R.
name: Neto, A. H. Castro
name: Chamon, C.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We study the effect of site dilution and quantum fluctuations in an antiferromagnetic spin system on a square lattice within the linear spin-wave approximation. By performing numerical diagonalization in real space and finite-size scaling, we characterize the nature of the low-energy spin excitations for different dilution fractions up to the classical percolation threshold. We find nontrivial signatures of fractonlike excitations at high frequencies. Our simulations also confirm the existence of an upper bound for the amount of quantum fluctuations in the ground state of the system, leading to the persistence of long-range order up to the percolation threshold. This result is in agreement with recent neutron-scattering experimental data and quantum Monte Carlo numerical calculations. We also show that the absence of a quantum critical point below the classical percolation threshold holds for a large class of systems whose Hamiltonians can be mapped onto a system of coupled noninteracting massless bosons.
description: RevTex 4, 16 pages, 8 EPS figures, typos corrected, data from Ref. 9 added, few minor changes in the text, to appear in Phys. Rev. B
Going deep with Minkowski functionals of convergence maps
Creators: name: Parroni, Carolina
name: Cardone, Vincenzo F.
name: Maoli, Roberto
name: Scaramella, Roberto
Publisher: name: arXiv
Year: 2019
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: Stage IV lensing surveys promise to make available an unprecedented amount of excellent data which will represent a huge leap in terms of both quantity and quality. This will open the way to the use of novel tools, which go beyond the standard second order statistics probing the high order properties of the convergence field. We discuss the use of Minkowski Functionals (MFs) as complementary probes to increase the lensing Figure of Merit (FoM), for a survey made out of a wide total area $A_{\rm{tot}}$ imaged at a limiting magnitude $\rm{mag_{W}}$ containing a subset of area $A_{\rm{deep}}$ where observations are pushed to a deeper limiting magnitude $\rm{mag_{D}}$. We present an updated procedure to match the theoretically predicted MFs to the measured ones, taking into account the impact of map reconstruction from noisy shear data. We validate this renewed method against simulated data sets with different source redshift distributions and total number density, setting these quantities in accordance with the depth of the survey. We can then rely on a Fisher matrix analysis to forecast the improvement in the FoM due to the joint use of shear tomography and MFs under different assumptions on $(A_{\rm{tot}},\,A_{\rm{deep}},\,\rm{mag_{D}})$, and the prior on the MFs nuisance parameters. It turns out that MFs can provide a valuable help in increasing the FoM of the lensing survey, provided the nuisance parameters are known with a non negligible precision. What is actually more interesting is the possibility to compensate for the loss of FoM due to a cut in the multipole range probed by shear tomography, which makes the results more robust against uncertainties in the modeling of nonlinearities. This makes MFs a promising tool to both increase the FoM and make the constraints on the cosmological parameters less affected by theoretical systematic effects.
Correlator Bank Detection of GW chirps. False-Alarm Probability, Template Density and Thresholds: Behind and Beyond the Minimal-Match Issue
Creators: name: Croce, R. P.
name: Demma, Th.
name: Longo, M.
name: Marano, S.
name: Matta, V.
name: Pierro, V.
name: Pinto, I. M.
Publisher: name: arXiv
Year: 2004
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: The general problem of computing the false-alarm rate vs. detection-threshold relationship for a bank of correlators is addressed, in the context of maximum-likelihood detection of gravitational waves, with specific reference to chirps from coalescing binary systems. Accurate (lower-bound) approximants for the cumulative distribution of the whole-bank supremum are deduced from a class of Bonferroni-type inequalities. The asymptotic properties of the cumulative distribution are obtained, in the limit where the number of correlators goes to infinity. The validity of numerical simulations made on small-size banks is extended to banks of any size, via a gaussian-correlation inequality. The result is used to estimate the optimum template density, yielding the best tradeoff between computational cost and detection efficiency, in terms of undetected potentially observable sources at a prescribed false-alarm level, for the simplest case of Newtonian chirps.
description: submitted to Phys. Rev. D
Selective acoustic control of photon-mediated qubit-qubit interactions
Creators: name: Neuman, Tomáš
name: Trusheim, Matthew
name: Narang, Prineha
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: Quantum technologies such as quantum sensing, quantum imaging, quantum communications, and quantum computing rely on the ability to actively manipulate the quantum state of light and matter. Quantum emitters, such as color centers trapped in solids, are a useful platform for the realization of elementary building blocks (qubits) of quantum information systems. In particular, the modular nature of such solid-state devices opens up the possibility to connect them into quantum networks and create non-classical states of light shared among many qubits. The function of a quantum network relies on efficient and controllable interactions among individual qubits. In this context, we present a scheme where optically active qubits of differing excitation energies are mutually coupled via a dispersive interaction with a shared mode of an optical cavity. This generally off-resonant interaction is prohibitive of direct exchange of information among the qubits. However, we propose a scheme in which by acoustically modulating the qubit excitation energies it is in fact possible to tune to resonance a pre-selected pair of qubits and thus open a communication channel between them. This method potentially enables fast ($\sim$ns) and parallelizable on-demand control of a large number of physical qubits. We develop an analytical and a numerical theoretical model demonstrating this principle and suggest feasible experimental scenarios to test the theoretical predictions.
description: 11 pages, 7 figures
Hemisotoma thermophila
Creators: name: Thibaud, Jean-Marc
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Isotomidae
Hemisotoma
Hemisotoma thermophila

description: Hemisotoma thermophila (Axelson, 1900) *
Isotoma thermophila Axelson, 1900: 9.
Hemisotoma thermophila – Bagnall 1949a: 95.
Cryptopygus thermophilus – Potapov 2001: 111.
DISTRIBUTION. — Aude. Ussonet Carcanet (Bonnet etal. 1977, 1979).
Bouches-du-Rhône. Camargue (Poinsot 1972b). — Sansouireà Salinde Badon, Camargue (Poinsot 1965, 1966b, 1973, 1979). — Camargue (Bigot & Poinsot-Balaguer 1978).
Corse. Poinsot 1970?, 1978.
Finistère. Roscoff et Kérestat (Delamare Deboutteville 1943).
Haute-Garonne. Toulouse (Cassagnau 1954d).
Haute-Garonne. Toulouse (Cassagnau 1962a, b).
Indre. Parc régional de la Brenne (Ponge et al. 2008).
Meurthe-et-Moselle. Picard 1962.
Pyrénées. Cassagnau 1961.
Pyrénées-Orientales. Forêtdela Matte (Bonnet etal. 1977, 1979).
Savoie. Forêtde Mâcot-la-Plagne, 950- 2150 m (Loranger etal. 2001). Sud-Ouestdela France. Cassagnau 1961.
Tarn, Aude. Montagne Noire (Cassagnau 1965).
Tarn. Sidobre (Izarra 1969).
Var. Massif des Maures (Poinsot-Balaguer & Kabakibi 1987).
ÉCOLOGIE. — Cassagnau 1962a, b (biocénose), 1965 (écologie, sol); Picard 1962 (faune psammique); Poinsot 1965, 1966b, 1973; Poinsot-Balaguer 1979; Bonnet etal. 1977, 1979 (déboisement, reboisement); Poinsot-Balaguer & Kabakibi 1987; Loranger etal. 2001 (sol acide); Ponge et al. 2008 (test perturbation environnement).
description: Published as part of Thibaud, Jean-Marc, 2017, Catalogue des collemboles de France, pp. 297-436 in Zoosystema 39 (3) on pages 357-358, DOI: 10.5252/z2017n3a1, http://zenodo.org/record/5496272
Additional file 7 of Fluorescent amplification for next generation sequencing (FA-NGS) library preparation
Creators: name: Chiniquy, Jennifer
name: Garber, Megan
name: Aindrila Mukhopadhyay
name: Hillson, Nathan
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: Plant Biology

description: Additional file 7: Figure S7. Comparison of percent reads between Nextera and AL libraries shows similarities in output from two distinct NGS workflows: The distributions of Nextera (blue) and AL (red) libraries of percent reads are overlaid to highlight the similarities (p-value = 1) of sequencing output from these methods. The range of percent reads for the Nextera library (blue) was 0.39–1.95, with a mean of 1.04 and a standard deviation of 0.43. The range of percent reads for the AL library (red) was 0.25–2.89, with a mean of 1.04 and a standard deviation of 0.5
Hydroisotoma schaefferi
Creators: name: Thibaud, Jean-Marc
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Isotomidae
Hydroisotoma
Hydroisotoma schaefferi

description: Hydroisotoma schaefferi (Krausbauer, 1898)
Isotoma schaefferi Krausbauer, 1898: 502.
Archisotoma dimorpha Denis, 1922b: 110.
Hydroisotoma schaefferi – Stach 1947: 250.
DISTRIBUTION. — Ariège. Massif del’Arize, 400- 1400 m (Deharveng & Lek 1995).
Haute-Garonne. Ruisseaux de La Maure et de Ruau (Lek-Ang & Deharveng 2002).
Hautes-Pyrénées. Vallon d’Ourtrigué, Azet (Cassagnau 1985).
Hérault. Bord du Lez à Castelnau près de Montpellier (Denis 1922b, A. dimorpha).
Pyrénées-Atlantiques. Valléede Lissugara (Cassagnau 1985).
REPRODUCTION. — Cassagnau 1985 (épitoquie).
ÉCOLOGIE. — Deharveng & Lek 1995; Lek-Ang & Deharveng 2002 (zone humide).
description: Published as part of Thibaud, Jean-Marc, 2017, Catalogue des collemboles de France, pp. 297-436 in Zoosystema 39 (3) on page 358, DOI: 10.5252/z2017n3a1, http://zenodo.org/record/5496272
MOESM1 of Identification of linear epitopes in SjSP-13 of Schistosoma japonicum using a GST-peptide fusion protein microplate array
Creators: name: Ma, Li
name: Zhao, Wenrong
name: Hou, Xunya
name: Liu, Mengmeng
name: Li, Yanna
name: Shen, Li
name: Xu, Xindong
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Biotechnology
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Additional file 1: Figure S1. Construction of GST-peptide-his fusion proteins. a The coding sequence of each peptide was obtained by annealing two complementary oligonucleotides and cloned into a pGEX-His vector for fusion and expression with an N-terminal GST tag and a C-terminal 6Ă His tag. b The expression of GST-peptide-His fusion proteins was confirmed by Western blot with anti-GST and anti-6Ă His antibodies.
Evolution of dwarf galaxy observable parameters
Creators: name: Ledinauskas, Eimantas
name: Zubovas, Kastytis
Publisher: name: arXiv
Year: 2020
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We present a semi-analytic model of isolated dwarf galaxy evolution and use it to study the build-up of observed correlations between dwarf galaxy properties. We analyse the evolution using models with averaged and individual halo mass assembly histories in order to determine the importance of stochasticity on the present-day properties of dwarf galaxies. The model has a few free parameters, but when these are calibrated using the halo mass - stellar mass and stellar mass-metallicity relations, the results agree with other observed dwarf galaxy properties remarkably well. Redshift evolution shows that even isolated galaxies change significantly over the Hubble time and that 'fossil dwarf galaxies' with properties equivalent to those of high-redshift analogues should be extremely rare, or non-existent, in the Local Universe. A break in most galaxy property correlations develops over time, at a stellar mass $M_* \simeq 10^7 M_\odot$. It is caused predominantly by the ionizing background radiation and can therefore in principle be used to constrain the properties of reionization.
description: 14 pages, 8 figures. Accepted for publication in MNRAS
The Relativistic Linear Singular Oscillator
Creators: name: Nagiyev, Shakir M.
name: Jafarov, Elchin I.
name: Imanov, Rizvan M.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Mathematical Physics (math-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Exactly-solvable model of the linear singular oscillator in the relativistic configurational space is considered. We have found wavefunctions and energy spectrum for the model under study. It is shown that they have correct non-relativistic limits.
description: 14 pages, 12 figures in eps format, IOP style LaTeX file (revised taking into account referees suggestions)
Searching for Quasi-Periodic Modulations in $γ$-ray Active Galactic Nuclei
Creators: name: Zhang, Pengfei
name: Yan, Dahai
name: Zhou, Jianeng
name: Wang, Jiancheng
name: Zhang, Li
Publisher: name: arXiv
Year: 2020
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: We perform a systematic search of quasi-periodic variabilities in $γ$-ray active galactic nuclei (AGNs) in the third \emph{Fermi} Large Area Telescope source catalog (3FGL). We employe two techniques, Lomb-Scargle Periodogram (LSP) and Weighted Wavelet Z-transform (WWZ), to obtain power spectra of $γ$-ray light curves covering from 2008 August to 2016 December. The results show that besides several objects that have been reported in previous works, an additional source, the FSRQ PKS 0601-70 has a possible quasi-periodic variability of 450 days in its $γ$-ray light curves with the significance of $>3σ$. The physical implications of our findings are discussed.
description: 7 pages, 4 figures. Accepted for publication in ApJ
Additional file 6 of Fluorescent amplification for next generation sequencing (FA-NGS) library preparation
Creators: name: Chiniquy, Jennifer
name: Garber, Megan
name: Aindrila Mukhopadhyay
name: Hillson, Nathan
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 6: Figure S6. Melting curve analysis of AL prepared gDNA: The melting curve plot (temperature vs. negative derivative of fluorescence (−dF/dT)) of every well from the AL-gDNA library is plotted. From quadrant 1–4, the input concentrations are 500 pg, 250 pg, 125 pg, 62.5 pg
Magnetized Neutron Stars
Creators: name: de Souza, Gibran H.
name: Kemp, Ernesto
name: Chirenti, Cecilia
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: In this work we show the results for numerical solutions of the relativistic Grad-Shafranov equation for a typical neutron star with 1.4 solar masses. We have studied the internal magnetic field considering both the poloidal and toroidal components, as well as the behavior of the field lines parametrized by the ratio between these components of the field.
Disorder-induced two-body localised state in interacting quantum walks
Creators: name: Toikka, L. A.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We observe the onset of non-ergodicity from ballistic propagation of a two-body bound state in an interacting discrete-time quantum walk (DTQW) due to time-dependent disorder in the interaction. The effect of the disorder on the two-body state can be interpreted as Anderson-type localisation in a projected DTQW, but without saturation of entanglement entropy. We characterise the two-body localisation in terms of the rate of growth of entanglement entropy and compute the localisation length. We find indications for two distinct growth laws for the entanglement: a logarithmic law in the delocalised phase and a double logarithmic law in the localised phase. We discuss similarities with many-body localisation (MBL).
Anomalies to All Orders
Creators: name: Adler, Stephen L.
Publisher: name: arXiv
Year: 2004
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: History and Philosophy of Physics (physics.hist-ph)
subject: FOS: Physical sciences

description: I give an account of my involvement with the chiral anomaly, and with the nonrenormalization theorem for the chiral anomaly and the all orders calculation of the trace anomaly, as well as related work by others. I then briefly discuss implications of these results for more recent developments in anomalies in supersymmetric theories.
description: 35 pages, latex; To appear in Fifty Years of Yang-Mills Theory, G. 't Hooft editor, to be published by World Scientific. Final version; references added
The slopes determined by n points in the plane
Creators: name: Martin, Jeremy L.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Algebraic Geometry (math.AG)
subject: Commutative Algebra (math.AC)
subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: 14N20 (Primary) 05C05, 13P10, 14M15 (Secondary)

description: Let $m_{12}$, $m_{13}$, ..., $m_{n-1,n}$ be the slopes of the $\binom{n}{2}$ lines connecting $n$ points in general position in the plane. The ideal $I_n$ of all algebraic relations among the $m_{ij}$ defines a configuration space called the {\em slope variety of the complete graph}. We prove that $I_n$ is reduced and Cohen-Macaulay, give an explicit Gröbner basis for it, and compute its Hilbert series combinatorially. We proceed chiefly by studying the associated Stanley-Reisner simplicial complex, which has an intricate recursive structure. In addition, we are able to answer many questions about the geometry of the slope variety by translating them into purely combinatorial problems concerning enumeration of trees.
description: 36 pages; final published version
Determining the primordial helium abundance and UV background using fluorescent emission in star-free dark matter haloes
Creators: name: Sykes, Calvin
name: Fumagalli, Michele
name: Cooke, Ryan
name: Theuns, Tom
Publisher: name: arXiv
Year: 2019
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Observational measures of the primordial helium mass fraction, $Y_{\rm P}$, are of interest for cosmology and fundamental particle physics. Current measures obtained from H II regions agree with the Standard Model prediction to approximately 1% precision, although these determinations may be affected by systematic uncertainties. This possibility can only be tested by independently measuring the helium abundance in new ways. Here, we propose a novel method to obtain a measurement of $Y_{\rm P}$ using hydrogen and helium recombination line emission from RELHICs: pristine, gas-rich but star-free low-mass dark matter haloes whose existence is predicted by hydrodynamical simulations. Although expected to be uncommon and intrinsically faint in emission, the primordial composition and simple physical properties of these objects make them an ideal laboratory to determine $Y_{\rm P}$. We present radiative transfer simulations to demonstrate the effectiveness of this approach, finding that comparing the emission in H and He lines, either via their volumetric emissivities, or integrated properties such as the surface brightness and total flux, may be used to infer $Y_{\rm P}$. Furthermore, we show that RELHICs can be used to provide an entirely novel constraint on the spectral slope of the ultraviolet background, and discuss the possibility of measuring this slope and the primordial helium abundance simultaneously.
description: 10 pages, 9 figures. Accepted for publication in MNRAS