cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Mapping the urban landscape at multiple ecological scales
Creators: name: Russo, Luca Francesco
name: Andrello, Marco
name: Giuliani, Matteo
name: Ancillotto, Leonardo
name: Carboni, Marta
name: La Bella, Greta
name: Martelli, Francesca
name: Santini, Luca
Publisher: name: figshare
Year: 2025
Subjects: classificationCode: 310308
subject: Terrestrial ecology

description: Urbanization is increasing worldwide, driving the expansion of urban areas and resulting in habitat loss, fragmentation, and changes in environmental conditions. Despite these pressures, urban landscapes can still support biodiversity, provide essential ecosystem services and contribute to conservation. Several metrics exist to characterize landscapes, but the spatial scale at which they are relevant depends on species ecology or on the ecological process of interest. Rome, one of Europe’s oldest cities, has experienced continuous urbanization over centuries while maintaining a remarkable level of greenery. This study explores the landscape structure in Rome using a multi-scale approach. We analyze key landscape metrics—Green Area Proportion, Edge Density, Shannon Diversity Index, and Edge Distance—across four spatial scales (10 m, 50 m, 250 m, and 1250 m), which are relevant for the ecology of a wide variety of plant and animal organisms that occur in the city. We show that these landscape metrics can be summarized by two major axes representing urbanization and fragmentation, respectively, and allow for grouping Rome green areas into three types (homogeneous green areas, highly impervious areas, and impervious surfaces interspersed with small green spaces). The high-resolution raster data generated in this study can lay the foundation to test how these axes at different scales and the resulting landscape types can shape urban species assemblages. The full article is available at: https://doi.org/10.1016/j.ufug.2025.128849
Additional file 1 of Profiling of long non-coding RNAs in hippocampal–entorhinal system subfields: impact of RN7SL1 on neuroimmune response modulation in Alzheimer’s disease
Creators: name: Liu, Hanyou
name: Li, Jingying
name: Wang, Xue
name: Luo, Shiqi
name: Luo, Dan
name: Ge, Wei
name: Ma, Chao
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Neuroscience
subject: Immunology
subject: FOS: Clinical medicine
subject: Mental Health

description: Supplementary Material 1
Temporal and Spatial Control of Neuronal Circuit Assembly and Maintenance
Creators: name: Shih, Mushaine
Publisher: name: University of Illinois Chicago
Year: 2025

description: A schizophrenia-associated genetic variant in the 3′UTR of the human FURIN gene, a homolog of C. elegans kpc-1, underscores the importance of the 3′UTR in neuronal development. We elucidate how the kpc-1 plays a role in spatial control of neuronal circuit assembly. A secondary structural motif in the kpc-1 3′UTR is necessary to facilitate mRNA localization to branching points and promote local translation to promote dendrite self-avoidance. Overexpression of DMA-1, a receptor involved in dendrite development, mimics the branching and self-avoidance defects seen in kpc-1 mutants. Our findings suggest that local KPC-1 protein synthesis at branching points downregulates DMA-1, promoting proper dendritic architecture and self-avoidance in mechanosensory neurons critical for male courtship. In parallel, we investigate LIN-41, a tripartite motif (TRIM) protein, in regulating neuronal circuit maintenance. A congenital hydrocephalus-associated mutation in TRIM71, the human homolog of lin-41, causes precocious neuronal differentiation and early-onset dendrite degeneration in C. elegans. We show that this mutation leads to precocious neuronal differentiation, early-onset neurodegeneration, and behavioral abnormalities in adulthood. Cell type-specific knockdown and rescue experiments confirm that LIN-41 is essential during early neuronal development to prevent early-onset neurodegeneration. These findings highlight a potential link between developmental regulation and the onset of neurodegenerative conditions.
title: Strategies for Leveraging Students’ Funds of Knowledge in Mathematics Instruction
title: A Systematic Review of K-12 Practices
titleType: Subtitle
Creators: name: Aina, Mary
Publisher: name: Washington State University
Year: 2023
Subjects: Equity and Diversity
Funds of knowledge (Fok)
Teaching Practices

description: Studies on equity and inclusion in the domain of mathematics teaching and learning are vast, but often do not connect students’ home and community mathematics knowledge bases to classroom practices to support formal mathematics, especially for marginalized student groups. This research aims to synthesize the literature and present equitable teaching and learning strategies that connect students' funds of knowledge (FoK) in academic research published over the last 20 years in K-12 education settings. Through the systematic search procedures, I reviewed, analyzed, and synthesized 26 studies that considered teaching practices that connect to students’ multiple mathematical knowledge bases. Findings from the review show that earlier research focused on the use of non-standard strategies to teach lessons, and task modification seemed to be the trend in recent research. Practices identified from the systematic review included home visits, digital technology, lesson material and task, teacher noticing, and contextualized problems. Studies operationalized students’ FoK as resource-based knowledge similarly with different terminologies. Implications from these findings suggest the need for more researchers from different nations to engage in research on mathematics instruction that draws on students’ mathematical thinking for in-classroom mathematics to further support teachers’ understanding of how to incorporate home- and community-based knowledge in their practice. Keywords: Funds of knowledge (Fok), Mathematics, Teaching Practices, Equity and Diversity
Additional file 1 of RET signaling in breast cancer therapeutic resistance and metastasis
Creators: name: Pecar, Geoffrey
name: Liu, Simeng
name: Hooda, Jagmohan
name: Atkinson, Jennifer M.
name: Oesterreich, Steffi
name: Lee, Adrian V.
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 1: Table S1 Active clinical trials for RET-targeting agents in cancer.
ENVIRONMENTAL FACTORS AFFECT SOCIAL ENGINEERING ATTACKS
Creators: name: Li, Minglu
Publisher: name: Purdue University Graduate School
Year: 2021
Subjects: Other information and computing sciences not elsewhere classified

description: Social engineering attacks can have serious consequences when it comes to information security. A social engineering attack aims at sensitive personal information by using personality weaknesses and using manipulation techniques. Because the user is often seen as the weakest link, techniques like phishing, baiting, and vishing, and deception are used to glean important personal information successfully. This article will analyze the relationship between the environment and social engineering attacks. This data consists of 516 people taking a survey. When it comes to discovering the relationship, there are two parts of the analysis. One is a high-dimensional analysis using multiple algorithms to find a connection between the environment and people’s behavior. The other uses a text analysis algorithm to study the pattern of survey questions, which can help discover why certain people have the same tendency in the same scenario. After combining these two, we might show how people have different reactions when dealing with social engineering attacks due to environmental factors.
The role of sensitivity matrix formulation on damage detection via EIT in non-planar CFRP laminates with surface-mounted electrodes
Creators: name: Sannamani, Monica Somanagoud
Publisher: name: Purdue University Graduate School
Year: 2021
Subjects: Aerospace engineering not elsewhere classified
Composite and hybrid materials

description: Carbon fibre reinforced polymers (CFRPs) are extensively used in aerospace, automotive and other weight-conscious applications for their high strength-to-weight ratio. Utilization of these lightweight materials unfortunately also involves dealing with damages unlike those seen in traditional monolithic materials. This includes invisible, below-the-surface damages such as matrix cracking, delaminations, fibre breakage, etc. that are difficult to spot outwardly in their early stages. Robust methods of damage detection and health monitoring are hence important. With the intention of avoiding weight addition to the structure to monitor its usability, it would be desirable to utilize an inherent property of these materials, such as its electrical conductivity, as an indicator of damage to render the material as self-sensing. To this end, electrical impedance tomography (EIT) has been explored for damage detection and health monitoring in self-sensing materials due to its ability to spatially localize damage via non-invasive electrical measurements. Presently, EIT has been applied mainly to materials possessing lesser electrical anisotropy than is encountered in CFRPs (e.g. nanofiller-modified polymers and cements), with experimental setups involving electrodes placed at the edges of plates. The inability of EIT to effectively tackle electrical anisotropy limits its usage in CFRP structures. Moreover, most real structures of complex geometries lack well-defined edges on which electrodes can be placed. Therefore, in this thesis, we confront these limitations by presenting a study into the effect of EIT sensitivity matrix formulation and surface-mounted electrodes on damage detection and localization in CFRPs. In this work, the conductivity is modeled as being anisotropic, and the sensitivity matrix is formed using three approaches – with respect to i) a scalar multiple of the conductivity tensor, ii) the in-plane conductivity, and iii) the through-thickness conductivity. It was found that through-hole damages can be adeptly identified with a combination of surface-mounted electrodes and a sensitivity matrix formed with respect to either a scalar multiple of the conductivity tensor or the in-plane conductivity. This theory was first validated on a CFRP plate to detect a single through-hole damage. Furthermore, EIT was also used to successfully detect both through-hole and impact damages on a non-planar airfoil shaped structure. Singular value decomposition (SVD) analysis revealed that the rank of the sensitivity matrix is not affected by the conductivity term with respect to which the sensitivity matrix is formed. The results presented here are an important step towards the transition of EIT based diagnostics to real-life CFRP structures.
Additional file 1 of Effects of robotic-assisted early mobilization versus conventional mobilization in intensive care unit patients: prospective interventional cohort study with retrospective control group analysis
Creators: name: Huebner, Lucas
name: Warmbein, Angelika
name: Scharf, Christina
name: Schroeder, Ines
name: Manz, Kirsi
name: Rathgeber, Ivanka
name: Gutmann, Marcus
name: Biebl, Johanna
name: Mehler-Klamt, Amrei
name: Huber, Jana
name: Eberl, Inge
name: Kraft, Eduard
name: Fischer, Uli
name: Zoller, Michael
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Cell Biology
Neuroscience
Biotechnology
Biological Sciences not elsewhere classified

description: Additional file 1. Supplemental figure 1: Flowchart of inclusion and exclusion of patients.
KLARpsy-Text: Sind heute mehr Kinder von ADHS betroffen als früher?
Creators: name: ZPID
Publisher: name: KLARpsy
Year: 2024
Subjects: subject: 150

description: KLARpsy-Texte sind kurze, lai:innengerechte, allgemeinverständliche und richtlinienbasierte Zusammenfassungen psychologischer Übersichtsarbeiten. Dieser KLARpsy-Text hat den Titel 'Sind heute mehr Kinder von ADHS betroffen als früher?'. Er wurde von Mitarbeitenden des Leibniz-Instituts für Psychologie verfasst. Als testlesende Person war Ko. beteiligt. Der KLARpsy-Text befasst sich mit folgenden Inhalten: ADHS betrifft viele Kinder und Jugendliche. Je nach Schätzung haben zwischen 2 und 6 von 100 Kindern ADHS. Manche Studien weisen darauf hin, dass heute ADHS- Diagnosen häufiger sind als früher. Es ist aber unklar, ob der Anteil der betroffenen Kinder in der Gesamtbevölkerung wirklich steigt. Mehr behandelte Fälle von ADHS könnten nämlich auch einfach ein Zeichen dafür sein, dass ADHS öfter erkannt wird. Dann wäre das Bewusstsein für ADHS einfach nur größer geworden. Mit ihrer Übersichtsarbeit wollten die Forschenden herausfinden: Hat sich die Anzahl der Kinder, die von ADHS betroffen sind, erhöht? Der Anteil der Kinder, die von ADHS betroffen sind, ist in den letzten Jahrzehnten nicht bedeutsam gestiegen. ADHS trat in der Gesamtbevölkerung immer etwa gleich häufig auf. Trotzdem kann es sein, dass es mehr oder weniger ADHS-Fälle gibt, die auch erkannt werden. Das hängt davon ab, wie viele Kinder auf ADHS getestet werden.
sj-docx-1-aph-10.1177_10105395211048318 – Supplemental material for Association of Risk Factors for Early Childhood Disability in Rural Pakistan
Creators: name: Ibrahim, Shahnaz H.
name: Rizvi, Arjumand
name: Ahmed, Anjum M.
name: Bhutta, Zulfiqar A.
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 111799 Public Health and Health Services not elsewhere classified
subject: FOS: Health sciences

description: Supplemental material, sj-docx-1-aph-10.1177_10105395211048318 for Association of Risk Factors for Early Childhood Disability in Rural Pakistan by Shahnaz H. Ibrahim, Arjumand Rizvi, Anjum M. Ahmed and Zulfiqar A. Bhutta in Asia Pacific Journal of Public Health
Additional file 1 of Hand hygiene knowledge, attitude, barriers and improvement measures among healthcare workers in the Republic of Korea: a cross-sectional survey exploring interprofessional differences
Creators: name: Kim, Jaewoong
name: Yu, Shi Nae
name: Jeong, Yeon Su
name: Kim, Jin Hwa
name: Jeon, Min Hyok
name: Kim, Tark
name: Choo, Eun Ju
name: Lee, Eunjung
name: Kim, Tae Hyong
name: Park, Se Yoon
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Cancer
subject: Science Policy

description: Supplemental Fig. 1. Hand hygiene and optimal hand hygiene compliance rate for each hospital.
Winkler Oxygen Method for seawater analysis
Creators: name: Kam, Kitty
Publisher: name: Zenodo
Year: 2024
Subjects: Dissolved Oxygen
Seawater
Winkler Titration
Sampling
Measurement at Sea

description: This guide provides a brief summary of the protocol of seawater sampling and laboratory analysis at sea for dissolved oxygen measurement using Winkler titration method. This guide does not represent the standard procedure used by other laboratories.
UNIFIED SECONDARY AND TERTIARY CREEP MODELING OF ADDITIVELY MANUFACTURED NICKEL-BASED SUPERALLOYS
Creators: name: Dhamade, Harshal Ghanshy
Publisher: name: Purdue University Graduate School
Year: 2021
Subjects: Mechanical engineering not elsewhere classified

description: Additively manufactured (AM) metals have been increasingly fabricated for structural applications. However, a major hurdle preventing their extensive application is lack of understanding of their mechanical properties. To address this issue, the objective of this research is to develop a computational model to simulate the creep behavior of nickel alloy 718 manufactured using the laser powder bed fusion (L-PBF) additive manufacturing process. A finite element (FE) model with a subroutine is created for simulating the creep mechanism for 3D printed nickel alloy 718 components.
A continuum damage mechanics (CDM) approach is employed by implementing a user defined subroutine formulated to accurately capture the creep mechanisms. Using a calibration code, the material constants are determined. The secondary creep and damage constants are derived using the parameter fitting on the experimental data found in literature. The developed FE model is capable to predict the creep deformation, damage evolution, and creep-rupture life. Creep damage and rupture is simulated as defined by the CDM theory.The predicted results from the CDM model compare well with experimental data, which are collected from literature for L-PBF manufactured nickel alloy 718 of creep deformation and creep rupture, at different levels of temperature and stress.
Using the multi-regime Liu-Murakami (L-M) and Kachanov-Rabotnov (K-R) isotropic creep damage formulation, creep deformation and rupture tests of both the secondary and tertiary creep behaviors are modeled.A single element FE model is used to validate the model constants. The model shows good agreement with the traditionally wrought manufactured 316 stainless steel and nickel alloy 718 experimental data collected from the literature. Moreover, a full-scale axisymmetric FE model is used to simulate the creep test and the capacity of the model to predict necking, creep damage, and creep-rupture life for L-PBF manufactured nickel alloy 718. The model predictions are then compared to the experimental creep data, with satisfactory agreement.
In summary, the model developed in this work can reliably predict the creep behavior for 3D printed metals under uniaxial tensile and high temperature conditions.
sj-docx-2-tam-10.1177_17588359211041961 – Supplemental material for Clinical and treatment characteristics of patients treated with the first therapeutic oncology biosimilars bevacizumab-awwb and trastuzumab-anns in the US
Creators: name: Jin, Ran
name: Mahtani, Reshma L.
name: Accortt, Neil
name: Lawrence, Tatiana
name: Sandschafer, Darcie
name: Loaiza-Bonilla, Arturo
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 111299 Oncology and Carcinogenesis not elsewhere classified
subject: FOS: Clinical medicine
subject: 111702 Aged Health Care
subject: FOS: Health sciences
subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: 110203 Respiratory Diseases

description: Supplemental material, sj-docx-2-tam-10.1177_17588359211041961 for Clinical and treatment characteristics of patients treated with the first therapeutic oncology biosimilars bevacizumab-awwb and trastuzumab-anns in the US by Ran Jin, Reshma L. Mahtani, Neil Accortt, Tatiana Lawrence, Darcie Sandschafer and Arturo Loaiza-Bonilla in Therapeutic Advances in Medical Oncology
Additional file 1 of Microbiota-mediated competition between Drosophila species
Creators: name: Rombaut, Antoine
name: Gallet, Romain
name: Qitout, Kenza
name: Samy, Mukherjy
name: Guilhot, Robin
name: Ghirardini, Pauline
name: Lazzaro, Brian P.
name: Becher, Paul G.
name: Xuéreb, Anne
name: Gibert, Patricia
name: Fellous, Simon
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Ecology

description: Additional file 1.
A New Fluorescence Detection Method for Tryptophan- and Tyrosine-Derived Allelopathic Compounds in Barley and Lupin
Creators: name: Leite Dias, Sara
name: Garibay-Hernández, Adriana
name: Brendel, Fabian Leon
name: Gabriel Chavez, Benjamin
name: Brückner, Elena
name: Mock, Hans-Peter
name: Franke, Jakob
name: D’Auria, John Charles
Publisher: name: Basel : MDPI
Year: 2023
Subjects: subject: allelopathy
subject: barley
subject: chromatography
subject: fluorescence detection
subject: gramine
subject: hordenine
subject: lupin
subject: UPLC
subject: Dewey Decimal Classification::500 | Naturwissenschaften::580 | Pflanzen (Botanik)

description: Barley (Hordeum vulgare) is one of the most widely cultivated crops for feedstock and beer production, whereas lupins (Lupinus spp.) are grown as fodder and their seeds are a source of protein. Both species produce the allelopathic alkaloids gramine and hordenine. These plant-specialized metabolites may be of economic interest for crop protection, depending on their tissue distribution. However, in high concentrations they pose a health risk to humans and animals that feed on them. This study was carried out to develop and validate a new method for monitoring these alkaloids and their related metabolites using fluorescence detection. Separation was performed on an HSS T3 column using slightly acidified water-acetonitrile eluents. Calibration plots expressed linearity over the range 0.09–100 pmol/µL for gramine. The accuracy and precision ranged from 97.8 to 123.4%, <7% RSD. The method was successfully applied in a study of the natural range of abundance of gramine, hordenine and their related metabolites, AMI, tryptophan and tyramine, in 22 barley accessions and 10 lupin species. This method provides accurate and highly sensitive chromatographic separation and detection of tryptophan- and tyrosine-derived allelochemicals and is an accessible alternative to LC-MS techniques for routine screening.
Comprehensive techno-economic assessment of power technologies and synthetic fuels under discussion for ship applications
Creators: name: Kistner, Lukas
name: Bensmann, Astrid
name: Minke, Christine
name: Hanke-Rauschenbach, Richard
Publisher: name: Amsterdam [u.a.] : Elsevier Science
Year: 2023
Subjects: subject: Decarbonization of the shipping sector
subject: Environmental assessment
subject: Fuel cells
subject: Ship power systems
subject: Synthetic fuels
subject: System design optimization
subject: Dewey Decimal Classification::600 | Technik::620 | Ingenieurwissenschaften und Maschinenbau

description: The decarbonization of the global ship traffic is one of the industry's greatest challenges for the next decades and will likely only be achieved with the introduction of synthetic fuels. Until now, however, not one single best technology solution emerged to ideally fit this task. Instead, different energy carriers including hydrogen, ammonia, methanol, methane, and synthetic diesel are subject of discussion for usage in either internal combustion engines or fuel cells. In order to drive the selection procedure, a case study for the year 2030 with all eligible combinations of power technologies and fuels is conducted. The assessment quantifies the technologies’ economic performances for cost-optimized system designs and in dependence of a ship's mission characteristics. Thereby, the influence of trends for electrofuel prices and shipboard volume opportunity costs are examined. Even if gaseous hydrogen is often considered not suitable for large ship applications due to its low volumetric energy density, both the comparatively small fuel price and the high efficiency of fuel cells lead to the overall smallest system costs for passages up to 21 days, depending on assumed cost parameters. Only for missions longer than seven days, fuel cells operating on methanol or ammonia can compete with gaseous hydrogen economically.
Additional file 1 of Multicentre prospective study to evaluate effectiveness and safety of gel-forming and hyaluronic-acid containing chewable tablets as add-on treatment in patients with gastroesophageal reflux disease (GERD) symptoms and unsatisfying proton pump inhibitor therapy
Creators: name: Gross, Manfred
name: Neuschwander, Dennis
name: Steffens, Lisa
name: Thomsen, Jörn
name: Röschmann-Doose, Kristina
Publisher: name: figshare
Year: 2024
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Science Policy

description: Supplementary Material 1
Investigation of Proteomic and Lipidomic Mycobacteriophage Mass Spectrometry Data
Creators: name: Smith, Gillian V
Publisher: name: Purdue University Graduate School
Year: 2021
Subjects: Agricultural biotechnology not elsewhere classified

description: Antibiotic resistance has been an increasing threat to humans since the inception of antibiotics. It can affect anyone, and the issue gets increasingly worse the more antibiotics are used over time. Bacteriophages are one potential way to fight back by harnessing their ability to infect and kill specific bacterial hosts, however, more needs to be studied about them before potential medical applications can be implemented. The purpose of this research is to analyze the proteins and lipids being produced in the bacteriophage-host interaction to better understand their relationship through the use of mass spectrometry and bioinformatics tools. In this study, the bacterial growth curve of Mycobacterium smegmatis was measured to determine the time of ideal bacteriophage inoculation. Methods of protein and lipid extraction were then tested on M. smegmatis to determine the most effective protocols applicable to the bacterial host and thereby mycobacteriophages. With the ideal extraction protocols and time at which to inoculate the host, two phages were chosen, extraction was implemented, and mass spectrometry was performed on the proteins and lipids present. This exploratory study is based on the data analysis, showing what proteins and lipids are produced as a result of bacteriophage inoculation over time and what that illuminates about the bacteriophage- host interaction. Through the use of modern methods of untargeted proteomics and lipidomics, one has the capability to fill these gaps of what is being produced by the bacteriophage and host in this interaction and expand upon potential bacteriophage functions to provide a more comprehensive understanding of the pathogenesis of the infection. Proteomic analysis determined that the acetone method of extraction was the most applicable to M. smegmatis and was used for further phage-treated samples and the method of proteomic data analysis tested on readily available mycobacteriophage data. Lipidomic analysis determined that the Bligh Dyer method of extraction was the most applicable to M. smegmatis and was used for further phage-treated samples. The lipids extracted from the phage-treated samples were categorized according to classification and showed functions relating to the cell membrane and energy utilization. Specific lipids from the phage-treated samples also indicated involvement in the abortive infection mechanisms of the phage-host interaction.
Semantic segmentation of mobile mapping point clouds via multi-view label transfer
Creators: name: Peters, Torben
name: Brenner, Claus
name: Schindler, Konrad
Publisher: name: Amsterdam [u.a.] : Elsevier
Year: 2023
Subjects: subject: 3D point clouds
subject: Convolutional neural network (CNN)
subject: Label transfer
subject: Multi-view
subject: Semantic segmentation
subject: Dewey Decimal Classification::500 | Naturwissenschaften::550 | Geowissenschaften

description: We study how to learn semantic segmentation of 3D point clouds from small training sets. The problem arises because annotating 3D point clouds is a lot more time-consuming and error-prone than annotating 2D images. On the one hand this means that one cannot afford to create a large enough training dataset for each new project. On the other hand it also means that there is not nearly as much public data available as there is for images, which one could use to pretrain a generic feature extractor that could then, with only little dedicated training data, be adapted (“fine-tuned”) to the task at hand. To address this bottleneck we explore the possibility to transfer knowledge from the 2D image domain to 3D point clouds. That strategy is of particular interest for mobile mapping systems that capture both point clouds and images, in a fully calibrated setting that makes it easy to connect the two domains. We find that, as expected, naively segmenting in image space and mapping the resulting labels onto the point cloud is not sufficient, as visual ambiguities, residual calibration errors, etc. affect the result. Instead, we propose a system that learns to merge image evidence from a varying number viewpoint, and 3D geometry information, into a common representation that encodes point-wise 3D semantics. To validate our approach we make use of a new mobile mapping dataset with 88M annotated 3D points and 2205 oriented multi-view images. In a series of experiments, we show how much label noise is caused by simplistic label transfer, and how well existing semantic segmentation architectures can correct it. Finally, we demonstrate that adding our learned 2D-to-3D multi-view label transfer significantly improves the performance of different segmentation backbones.
sj-docx-2-aut-10.1177_1532673X211043445 – Supplemental material for Positive and differential diagnosis of autism in verbal women of typical intelligence: A Delphi study
Creators: name: Cumin, Julie
name: Pelaez, Sandra
name: Mottron, Laurent
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: FOS: Clinical medicine
subject: 111799 Public Health and Health Services not elsewhere classified
subject: FOS: Health sciences
subject: Education
subject: 130312 Special Education and Disability
subject: FOS: Educational sciences

description: Supplemental material, sj-docx-2-aut-10.1177_1532673X211043445 for Positive and differential diagnosis of autism in verbal women of typical intelligence: A Delphi study by Julie Cumin, Sandra Pelaez and Laurent Mottron in Autism
Higher-order mean-field theory of chiral waveguide QED
Creators: name: Kusmierek, Kasper Jan
name: Mahmoodian, Sahand
name: Cordier, Martin
name: Hinney, Jakob
name: Rauschenbeutel, Arno
name: Schemmer, Maximilian
name: Schneeweiss, Philipp
name: Volz, Jürgen
name: Hammerer, Klemens
Publisher: name: Amsterdam : SciPost Foundation
Year: 2023
Subjects: Waveguide QED
light-atom interaction

description: Waveguide QED with cold atoms provides a potent platform for the study of non-equilibrium, many-body, and open-system quantum dynamics. Even with weak coupling and strong photon loss, the collective enhancement of light-atom interactions leads to strong correlations of photons arising in transmission, as shown in recent experiments. Here we apply an improved mean-field theory based on higher-order cumulant expansions to describe the experimentally relevant, but theoretically elusive, regime of weak coupling and strong driving of large ensembles. We determine the transmitted power, squeezing spectra and the degree of second-order coherence, and systematically check the convergence of the results by comparing expansions that truncate cumulants of few-particle correlations at increasing order. This reveals the important role of many-body and long-range correlations between atoms in steady state. Our approach allows to quantify the trade-off between anti-bunching and output power in previously inaccessible parameter regimes. Calculated squeezing spectra show good agreement with measured data, as we present here.
sj-docx-1-sjp-10.1177_14034948211040963 – Supplemental material for Designing an education intervention for understanding racism in healthcare in Sweden: development and implementation of anti-racist strategies through shared knowledge production and evaluation
Creators: name: Bradby, Hannah
name: Hamed, Sarah
name: Thapar-Björkert, Suruchi
name: Ahlberg, Beth Maina
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 111799 Public Health and Health Services not elsewhere classified
subject: FOS: Health sciences

description: Supplemental material, sj-docx-1-sjp-10.1177_14034948211040963 for Designing an education intervention for understanding racism in healthcare in Sweden: development and implementation of anti-racist strategies through shared knowledge production and evaluation by Hannah Bradby, Sarah Hamed, Suruchi Thapar-Björkert and Beth Maina Ahlberg in Scandinavian Journal of Public Health
sj-docx-1-aor-10.1177_00034894211045636 – Supplemental material for Association of Quality of Life Measures and Otolaryngologic Care in Cystic Fibrosis Patients
Creators: name: Leong, Stephen
name: Sharma, Rahul K.
name: Safi, Chetan
name: DiMango, Emily
name: Keating, Claire
name: Gudis, David A.
name: Overdevest, Jonathan B.
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 110315 Otorhinolaryngology
subject: FOS: Clinical medicine

description: Supplemental material, sj-docx-1-aor-10.1177_00034894211045636 for Association of Quality of Life Measures and Otolaryngologic Care in Cystic Fibrosis Patients by Stephen Leong, Rahul K. Sharma, Chetan Safi, Emily DiMango, Claire Keating, David A. Gudis and Jonathan B. Overdevest in Annals of Otology, Rhinology & Laryngology
Additional file 1 of Epidemic intelligence in Europe: a user needs perspective to foster innovation in digital health surveillance
Creators: name: Bouyer, Fanny
name: Thiongane, Oumy
name: Hobeika, Alexandre
name: Arsevska, Elena
name: Binot, Aurélie
name: Corrèges, Déborah
name: Dub, Timothée
name: Mäkelä, Henna
name: van Kleef, Esther
name: Jori, Ferran
name: Lancelot, Renaud
name: Mercier, Alize
name: Fagandini, Francesca
name: Valentin, Sarah
name: Van Bortel, Wim
name: Ruault, Claire
Publisher: name: figshare
Year: 2024
Subjects: subject: Information Systems
subject: FOS: Computer and information sciences

description: Supplementary Material 1.
sj-docx-1-bjp-10.1177_13691481211044655 – Supplemental material for Statecraft and incremental change: Explaining the success of pension reforms in the United Kingdom
Creators: name: Massala, Thomais
name: Pearce, Nick
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 160607 International Relations
subject: FOS: Political science

description: Supplemental material, sj-docx-1-bjp-10.1177_13691481211044655 for Statecraft and incremental change: Explaining the success of pension reforms in the United Kingdom by Thomais Massala and Nick Pearce in The British Journal of Politics and International Relations
title: The impacts of natural disasters on breastfeeding practices: A systematic scoping review
Creators: name: Wagner, Jade
Publisher: name: University of Massachusetts Amherst
Year: 2025
Subjects: natural disaster
breastfeed*
breastfeeding
breastfed
women's health
maternal health
wildfire

description: Abstract Background Understanding barriers and facilitators to breastfeeding practices in areas impacted by natural disasters can help humanitarian aid organizations make changes to the way they provide resources during crises. This review aims to assess the impacts of natural disasters on women’s breastfeeding practices. Methods PubMed was searched on February 19, 2025 for primary studies looking at the impact of a natural disaster directly on women’s breastfeeding practices globally. The results were narratively synthesized and grouped by natural disaster type and outcome. Results 10 studies were included in this review with 11 papers, with one reporting on the same event. Included studies all focused on barriers and facilitators of breastfeeding. Overall, the included studies represented 1,400 participants. Study size ranged from 6 to 897 participants. All studies were conducted outside of the United States, with two being in Turkey, and the rest from Iran, Italy, India, Haiti, Nepal, Canada, and Pakistan. Natural disaster types in this review included earthquakes, floods, a tsunami, and a wildfire. In the aftermath of a natural disaster, common barriers to breastfeeding practices were lack of privacy for breastfeeding, stress/anxiety, nutrition and low food consumption, cultural beliefs, and shelter. Nutrition and low food consumption as well as mental health stressors both, in some cases, reduced breast milk production. Humanitarian aid acted as a barrier to some and a facilitator to others, depending on the circumstances. Facilitators of breastfeeding were more sparse in the literature, but themes were religion and cultural breastfeeding norms, aid, privacy, and sense of community among other women. Only one study had breastfeeding practices assessed at more than one time after the natural disaster. Discussion Further research should be done assessing breastfeeding practices at multiple points in time. These papers presented information about displaced populations and it would be interesting to see future research on non-displaced populations. Humanitarian interventions were sometimes inconsistent with the needs of the displaced mothers pointing to the need for further refinements to encourage breastfeeding practices during natural disasters.
In silico studies for improving target selectivity of anti-malarial dual falcipain inhibitors vis-à-vis human cathepsins
Creators: name: Patra, Jeevan
name: Arora, Smriti
name: Debnath, Utsab
name: Mahindroo, Neeraj
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Medicine
subject: Neuroscience
subject: Pharmacology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences

description: Dual falcipain-2 (FP-2) and falcipain-3 (FP-3) inhibitors, NM12 and NM15, displayed micromolar inhibitions but they exhibit similar binding affinities for the human cathepsins, thus indicating potential toxicity. The current study aims to develop a model to enhance the selectivity of the falcipain inhibitors vis-à-vis human cathepsins using previously identified dual falcipain 2 and 3 inhibitors, NM12 and NM15. To improve the selectivity of NM12 and NM15, analogs with weaker interactions with the conserved residues in the FPs and hCatK were designed while enhancing the unique interactions for the FPs. In silico analysis was carried out in the S2 subsite of both plasmodium and human proteases which is considered the preferred selective site due to the presence of less conserved residues. The Fasta sequence alignment and active/conserved binding site superimposition show that FPs contain acidic polar residues (Asp234 for FP2 and Glu243 for FP3) while hCatK has a neutral hydrophobic residue (Leu209) at the S2 subsite. Therefore, analogs of NM12 and NM15 were designed to enhance affinity and selectivity by improving interactions with these acidic residues while avoiding interactions with hydrophobic residues in hCatK. Newly designed analogs (NM12H and NM15G) show better selectivity as well as binding affinity towards FPs (ΔG of NM12H: −74.49 kcal/mol for FP2, −70.97 kcal/mol for FP3; ΔG of NM15G: −70.09 kcal/mol for FP2, −74.52 kcal/mol for FP3) as compared to NM12 and NM15. Thus, the selectivity and binding affinity against dual falcipains vis-à-vis human cathepsin were improved using molecular dynamic simulations.
Additional file 2 of Epidemic intelligence in Europe: a user needs perspective to foster innovation in digital health surveillance
Creators: name: Bouyer, Fanny
name: Thiongane, Oumy
name: Hobeika, Alexandre
name: Arsevska, Elena
name: Binot, Aurélie
name: Corrèges, Déborah
name: Dub, Timothée
name: Mäkelä, Henna
name: van Kleef, Esther
name: Jori, Ferran
name: Lancelot, Renaud
name: Mercier, Alize
name: Fagandini, Francesca
name: Valentin, Sarah
name: Van Bortel, Wim
name: Ruault, Claire
Publisher: name: figshare
Year: 2024
Subjects: subject: Information Systems
subject: FOS: Computer and information sciences

description: Supplementary Material 2.
sj-docx-1-jre-10.1177_15562646211043632 - Supplemental material for Reactions to Laboratory-Based Trauma Research in a Sample of Incarcerated Women
Creators: name: Lawyer, Steven R.
name: Smith, Kathleen
name: Thomas, Beena
name: Pemberton, Shelby
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 160807 Sociological Methodology and Research Methods
subject: FOS: Sociology

description: Supplemental material, sj-docx-1-jre-10.1177_15562646211043632 for Reactions to Laboratory-Based Trauma Research in a Sample of Incarcerated Women by Steven R. Lawyer, Kathleen Smith, Beena Thomas and Shelby Pemberton in Journal of Empirical Research on Human Research Ethics
Development and Applications of Ultrasensitive Methods for Single-Cell Analyses
Creators: name: Matsumoto, Cory Jack
Publisher: name: University of Illinois Chicago
Year: 2025

description: Single-cell proteomics is a rapidly advancing and increasingly vital field that offers the potential to uncover phenotypically direct aspects of cellular heterogeneity through the comprehensive analysis of proteins at the single-cell level. This technique provides unprecedented insights into cellular heterogeneity, revealing the diverse functional states of individual cells within complex tissues, especially when combined with other omics in a multi-omics analysis. While advancements in mass spectrometry, sample processing, and data analysis have improved the state of single-cell analyses, significant challenges remain, derived from the limited amount of analytes in a single cell and subsequent sample loss from container binding. This thesis provides a
comprehensive overview of our efforts to address some of the significant challenges of single-cell analyses by reducing the amount of sample loss, improving the throughput, and improving the detectability of peptides.
To address the significant issue of sample loss, we have created a device to process the single-cell samples that we termed the “Levcell.” The Levcell uses acoustic levitation to levitate up to 6 samples in the air without needing a container, eliminating the sample loss from container binding. Combined with a custom-built single-cell isolation system, reagent sample addition arm, and computer vision, the Levcell is a comprehensive tool to process single-cell samples in an automated and high-throughput fashion. Additional uses for the Levcell are also explored in this thesis.
Additionally, we have developed a high-throughput dual-column system to improve LCMS utilization time efficiently. This system alternates between two columns to wash, equilibrate, and load a subsequent sample in one column, while the current sample is being assessed in the other, significantly reducing the time the LC-MS does not detect the sample. When applied to single-cell analyses, the dual-column system can efficiently process the samples needed to identify cellular heterogeneity.
Lastly, we comprehensively analyze improving peptide detectability through proteomewide alkylation. By labeling peptide samples from cell digests with aldehydes of various side chain lengths, we systematically test for biases in labeling sites, improvements in peptide intensity, and finally, labeling efficiencies of reactions. Our findings could lead to the applications of improving identifications of low-yield samples down to that of a single cell.
Additional file 5 of Epidemic intelligence in Europe: a user needs perspective to foster innovation in digital health surveillance
Creators: name: Bouyer, Fanny
name: Thiongane, Oumy
name: Hobeika, Alexandre
name: Arsevska, Elena
name: Binot, Aurélie
name: Corrèges, Déborah
name: Dub, Timothée
name: Mäkelä, Henna
name: van Kleef, Esther
name: Jori, Ferran
name: Lancelot, Renaud
name: Mercier, Alize
name: Fagandini, Francesca
name: Valentin, Sarah
name: Van Bortel, Wim
name: Ruault, Claire
Publisher: name: figshare
Year: 2024
Subjects: subject: Information Systems
subject: FOS: Computer and information sciences

description: Supplementary Material 5.
sj-docx-7-ejt-10.1177_13540661211046602 – Supplemental material for Mission (im)possible? UN military peacekeeping operations in civil wars
Creators: name: Pushkina, Darya
name: Siewert, Markus B.
name: Wolff, Stefan
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 160607 International Relations
subject: FOS: Political science

description: Supplemental material, sj-docx-7-ejt-10.1177_13540661211046602 for Mission (im)possible? UN military peacekeeping operations in civil wars by Darya Pushkina, Markus B. Siewert and Stefan Wolff in European Journal of International Relations
DEPREDATION OF OLIVE RIDLEY AND LOGGERHEAD TURTLE CLUTCHES ON BEACHES WITH AND WITHOUT PREDATOR MANAGEMNT
Creators: name: Cornhill, Carlynn Nicole
Publisher: name: Purdue University Graduate School
Year: 2021
Subjects: Animal behaviour
Behavioural ecology
Global change biology
Marine and estuarine ecology (incl. marine ichthyology)
Population ecology
Vertebrate biology
Zoology not elsewhere classified

description: Management of predation on sea turtle nesting beaches is vital to conservation efforts for the vulnerable loggerhead turtles (Caretta caretta) and olive ridley turtles (Lepidochelys olivacea). Sea turtles increasingly face threats from invasive and human-tolerant mammalian predators as human disturbances on nesting beaches rises. The intensity of mammalian predation has increased in Las Baulas National Park in Costa Rica which is an important nesting site for several species of threatened and endangered sea turtles. I analyzed loggerhead and olive ridley nest predation on four beaches in the United States and Costa Rica that were chosen for variations in degree of human disturbance and management strategies. My objectives were to 1) determine if egg predation rates differ at the four sites, 2) determine the most destructive predators at each location, and 3) suggest management options to alleviate mammalian threats to turtle clutches on Playa Grande and Playa Cabuyal in Costa Rica. My results show that the beaches without a nest protection or predator control program had very high rates of predation. Invasive mammalian predators and mammalian predators associated with human disturbance were the most destructive at the four sites. I recommend that regulations regarding dogs and the take of eggs from the beach are enforced at Playa Cabuyal and that physical nest protection is rapidly implemented at Playa Grande. I also recommend that the National Park consider managing raccoon predation by removing problem individuals, but caution that they do so in a way that maintains the animals’ role in the ecosystem.
Additional file 1 of Investigating the relationship between sleep and migraine in a global sample: a Bayesian cross-sectional approach
Creators: name: Stanyer, Emily C.
name: Brookes, Jack
name: Pang, Jia Rong
name: Urani, Alexandre
name: Holland, Philip R.
name: Hoffmann, Jan
Publisher: name: figshare
Year: 2024
Subjects: subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 1: Supplementary Table 1. STROBE Statement -checklist of items that should be included in reports of observational studies.