cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1 of Lived experience of medical management in recurrent vulvovaginal candidiasis: a qualitative study of an uncertain journey
Creators: name: Bradfield Strydom, Moira
name: Walpola, Ramesh L.
name: McMillan, Sara
name: Khan, Sohil
name: Ware, Robert S.
name: Tiralongo, Evelin
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. Interview Guide 1.0. The interview guide was developed to support the semi-structured interviews, containing questions regarding their first and recurrent episodes of RVVC; beliefs around the causes and triggers of RVVC; treatment options and management experiences; information access around self-help and CM utilisation; and the impact of RVVC on well-being.
The bilingual imagination : Joyce, Beckett, Nabokov and the making of modern fiction
Creators: name: Kager, Anna
Publisher: name: No Publisher Supplied
Year: 2014

description: This dissertation traces the creative tension that results from writing with more than one language in hand. I suggest that bilingual authors are linguistically complex in a manner that makes them fundamentally different from monolingual ones. A deeper awareness of the material way in which bilingual writing diverges from the writing of monolingual authors may not only shed new light on these three authors and their writings but on the workings of language in multilingual fiction, and possibly on the workings of language in literature generally. While James Joyce, Samuel Beckett and Vladimir Nabokov were thoroughly fluent in several languages, multilingualism takes a different form in each of their works. Yet for all three authors a multilingual background is indissolubly connected to the writing, both on the formal level of the text (the use of foreign words, multilingual puns, a play with accent and pronunciation) and as theme and content. Although all their languages leave traces in their writing, I will focus especially on the two languages that in each writer was most important in the actual crafting of the works: English and Italian for Joyce, English and French for Beckett, English and Russian for Nabokov. Through analyses of texts by Joyce (the “Epiphanies,” Ulysses and Finnegans Wake), Nabokov (Король, дама, валет (King, Queen, Knave), Пoдвиг (Glory), Lolita, Pnin and Ada) and Beckett (Watt, and The Trilogy in English and French), of letters (both published and unpublished), interviews, recollections of the writers by their contemporaries, recordings, (auto) biographies, and notebooks, I examine the effect that multilingualism has on their written language and suggest that their complex multilingual background produced distinct literary results.
Systematics in the ALMA Proposal Review Rankings
Creators: name: Carpenter, John
name: Corvillón, Andrea
Publisher: name: Zenodo
Year: 2023

description: The Proposal Handling Team at the Joint ALMA Observatory (JAO) has been carefully monitoring the outcomes of the ALMA proposal review process to identify potential biases. In particular, we have been monitoring if systematics in the proposal rankings are present in relation to the experience of the Principal Investigator (PI) in submitting ALMA proposals, the regional affiliation of the PI, and the gender of the PI. In response to the presence of some systematics, and in particular pertaining to regional affiliation and experience of the PIs, ALMA instituted dual-anonymous review in Cycle 8. In this talk, I will summarize the systematics in the proposal rankings that have been identified in the ALMA review process and evaluate the impact of dual-anonymous review. 
Additional file 1 of Immune-inflammatory biomarkers and the risk of cardiac injury in COVID-19 patients with diabetes: a retrospective cohort study
Creators: name: Bo, Yi
name: Yuli, Cai
name: Ye, Wang
name: Junfeng, Li
name: Xiaolin, Chen
name: Yan, Bao
name: Zhongyuan, Wen
Publisher: name: figshare
Year: 2022
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 1: Table S1. The comparison of COVID-19 patients with and without core examination results. Figure S1. The incidence of complications of COVID-19 patients with and without DM. Figure S2. The percent of immunocyte subsets in COVID-19 patients with cardiac injury grouped by DM and non-DM. Figure S3. ROC analysis of immune-inflammatory parameters for in-hospital mortality of all COVID-19 patients.
Memory and burstiness in dynamic networks
Creators: name: Colman, Ewan R.
name: Greetham, Danica Vukadinović
Publisher: name: arXiv
Year: 2015
Subjects: subject: Physics and Society (physics.soc-ph)
subject: Social and Information Networks (cs.SI)
subject: Data Analysis, Statistics and Probability (physics.data-an)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: A discrete-time random process is described which can generate bursty sequences of events. A Bernoulli process, where the probability of an event occurring at time $t$ is given by a fixed probability $x$, is modified to include a memory effect where the event probability is increased proportionally to the number of events which occurred within a given amount of time preceding $t$. For small values of $x$ the inter-event time distribution follows a power-law with exponent $-2-x$. We consider a dynamic network where each node forms, and breaks connections according to this process. The value of $x$ for each node depends on the fitness distribution, $ρ(x)$, from which it is drawn; we find exact solutions for the expectation of the degree distribution for a variety of possible fitness distributions, and for both cases where the memory effect either is, or is not present. This work can potentially lead to methods to uncover hidden fitness distributions from fast changing, temporal network data such as online social communications and fMRI scans.
description: 13 pages, 7 figures
Additional file 1 of Immune dysregulation associated with co-occurring germline CBL and SH2B3 variants
Creators: name: Baccelli, Francesco
name: Leardini, Davide
name: Muratore, Edoardo
name: Messelodi, Daria
name: Bertuccio, Salvatore Nicola
name: Chiriaco, Maria
name: Cancrini, Caterina
name: Conti, Francesca
name: Castagnetti, Fausto
name: Pedace, Lucia
name: Pession, Andrea
name: Yoshimi, Ayami
name: Niemeyer, Charlotte
name: Tartaglia, Marco
name: Locatelli, Franco
name: Masetti, Riccardo
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 1: Supplementary Figure S1. Photographs of patient III-3; Supplementary Figure S2. Bone marrow aspirate smear from patient III.2; Supplementary Figure S3. Sanger sequencing validations of CBL c.1141T>C (A) and SH2B3 c.1697G>A (B) mutations performed on peripheral blood cells of II.2 and III.2; Supplementary Table S1. Immunoglobulin (Ig) levels and antibody responses.
Development of Yangbajing Air shower Core detector array for a new EAS hybrid Experiment
Creators: name: Liu, Jinsheng
name: Huang, Jing
name: Chen, Ding
name: Zhang, Ying
name: Zhai, Liuming
name: Chen, Xu
name: Hu, Xiaobin
name: Lin, Yuhui
name: Zhang, Xueyao
name: Feng, Cunfeng
name: Jia, Huanyu
name: Zhou, Xunxiu
name: DanZengLuoBu
name: Chen, Tianlu
name: Li, Haijin
name: Liu, Maoyuan
name: Yuan, Aifang
Publisher: name: arXiv
Year: 2015
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: Aiming at the observation of cosmic-ray chemical composition at the "knee" energy region, we have been developinga new type air-shower core detector (YAC, Yangbajing Air shower Core detector array) to be set up at Yangbajing (90.522$^\circ$ E, 30.102$^\circ$ N, 4300 m above sea level, atmospheric depth: 606 g/m$^2$) in Tibet, China. YAC works together with the Tibet air-shower array (Tibet-III) and an underground water cherenkov muon detector array (MD) as a hybrid experiment. Each YAC detector unit consists of lead plates of 3.5 cm thick and a scintillation counter which detects the burst size induced by high energy particles in the air-shower cores. The burst size can be measured from 1 MIP (Minimum Ionization Particle) to $10^{6}$ MIPs. The first phase of this experiment, named "YAC-I", consists of 16 YAC detectors each having the size 40 cm $\times$ 50 cm and distributing in a grid with an effective area of 10 m$^{2}$. YAC-I is used to check hadronic interaction models. The second phase of the experiment, called "YAC-II", consists of 124 YAC detectors with coverage about 500 m$^2$. The inner 100 detectors of 80 cm $\times $ 50 cm each are deployed in a 10 $\times$ 10 matrix from with a 1.9 m separation and the outer 24 detectors of 100 cm $\times$ 50 cm each are distributed around them to reject non-core events whose shower cores are far from the YAC-II array. YAC-II is used to study the primary cosmic-ray composition, in particular, to obtain the energy spectra of proton, helium and iron nuclei between 5$\times$$10^{13}$ eV and $10^{16}$ eV covering the "knee" and also being connected with direct observations at energies around 100 TeV. We present the design and performance of YAC-II in this paper.
description: 6 pages, 9 figures, Submitted to Chinese Physics C
Between state and sickness : the social experience of HIV/AIDS illness management and treatment in Grahamstown, South Africa
Creators: name: Jones, Chaunetta
Publisher: name: No Publisher Supplied
Year: 2014

description: This dissertation examines the health and antiretroviral treatment-seeking behaviors among people living with HIV/AIDS in Grahamstown, South Africa. I conducted fourteen months of ethnographic fieldwork from 2008-2009, and use the concept of illness management as a complementary framework to medical anthropological health-seeking models to trace the social experiences of disease among those infected with and affected by HIV/AIDS. My research reveals that entrenched economic inequalities and structural barriers to healthcare, largely a result of apartheid-era policies and delayed HIV/AIDS decision-making at the national level, often force people living with HIV/AIDS to choose between their economic or health security. In communities with extremely high unemployment, like Grahamstown, people living with HIV/AIDS increasingly rely on government disability grants as their sole source of income. My ethnographic findings uncovered a complex dilemma, in which people engage in a range of treatment-seeking practices, including manipulating antiretroviral treatment adherence, to keep their CD4 counts at or below the threshold to remain eligible for a grant. Failed or modified treatment adherence may lead to the development and spread of drug resistant strains of the virus, potentially creating significant individual and public health concerns. Further, using rich life history and illness narratives, I demonstrate how state-prescribed health care models, based largely on standardized, biomedical categories, often belie the ways in which health-seeking processes are highly fluid and nuanced within everyday lived experiences. Future state-prescribed HIV/AIDS treatment programs should remain cognizant of patient treatment and prevention strategies, and develop holistic initiatives that address both health and economic security, particularly in resource-limited communities. This research contributes to medical anthropological scholarship on inequality and health, ethnographic studies on HIV/AIDS in southern Africa, and anthropological analyses of how socio-political and economic forces shape health and treatment-seeking practices.
Privacy, Storage, and Usage: A Look at How Older Adults View Big Data in Health Care
Creators: name: AARP
Publisher: name: Roper Center for Public Opinion Research
Year: 2023

description: Overall health status (1); limitations due to health concerns (1); conditions/illnesses currently diagnosed with (14); frequency of health care visits over the past year (1); security of personal information compared to 5 years ago (1); tracking of cellphone activity (2); medical information shared outside of health care facilities (7); health and habit tracking apps/websites (3); concern over specific entities collecting/analyzing health information (9); benefits vs. risks of companies collecting personal data (1); privacy policy notices/agreements (8); familiarity with consumer privacy legislation (3); big health data (11).
Exploring open infrastructure needs in Latin America, Africa, and Asia
Creators: name: Tsang, Emmy
Publisher: name: Zenodo
Year: 2023
Subjects: open science
open infrastructure
scholarly communication

description: Slides by Emmy Tsang presented at the IFLA WLIC satellite "Inclusiveness through Openness" in Rotterdam, the Netherlands, on 19 August 2023.
description: This work was funded by Arcadia, a charitable fund of Lisbet Rausing and Peter Baldwin. Additional information about how our work is funded can be found here: https://investinopen.org/about/how-were-funded/
Encaged and Enraged: A Study of How Level of Aggression Relates to Perceived Crowdedness, Risk, and Boredom
Creators: name: Lo, Lap Yan
name: Li, Wang On
Publisher: name: International Journal of Conflict and Violence (IJCV)
Year: 2023

description: Social distancing policies have been practiced in different regions around the world to minimize the number of cases of COVID-19. After an outbreak in mid-July 2020, the Hong Kong government adopted a series of administrative measures and strongly encouraged residents to stay at home. This lockdown period provided an opportunity to study variations in levels of aggression when people spend more time than usual in an overcrowded living environment. A total of 185 Hong Kong residents were recruited for this study. Their perceptions of the crowdedness of their living space, aggression level (measured using the BPAQ-SF), proneness to boredom (measured by the BFS-SF), and perceptions of risk regarding COVID-19 were collected via online questionnaires. Perceived crowdedness, proneness to boredom, and perceptions of susceptibility to COVID-19 were found to significantly predict the variance of different types of aggression in a regression model. In a mediation analysis, anger acted as a mediator of the relationship between proneness to boredom and different types of aggression. Participants’ perceptions of their susceptibility to COVID-19 suggested an underlying worry about the contagiousness of the virus, which was in turn associated with feelings of uncertainty and a rise in aggression level.
description: International Journal of Conflict and Violence (IJCV), Bd. 17 (2023)
Additional file 1 of Reducing the Inadvertent Spread of Retracted Science: recommendations from the RISRS report
Creators: name: Schneider, Jodi
name: Woods, Nathan D.
name: Proescholdt, Randi
Publisher: name: figshare
Year: 2022
Subjects: Medicine
Cancer
Science Policy

description: Additional file 1. Online Supplement Description: Further description of RISRS workshops and excerpts from 2 surveys of workshop participants.
Additional file 1 of General psychiatric symptoms among Bangladeshi people approximately one year after the onset of the COVID-19 pandemic
Creators: name: Banik, Rajon
name: Islam, Md. Saiful
name: Ahmed, Masruk
name: Koly, Kamrun Nahar
name: Mubarak, Mahfuza
name: Rahman, Mahmudur
name: Zhai, Zu Wei
name: Sikder, Md. Tajuddin
name: Potenza, Marc N.
Publisher: name: figshare
Year: 2022
Subjects: subject: Neuroscience
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1. Questionnaire: General psychiatric symptoms among Bangladeshi people approximately 1 year after the onset of the COVID-19 pandemic.
Strings from domain walls in supersymmetric Yang-Mills theory and adjoint QCD
Creators: name: Anber, Mohamed M.
name: Poppitz, Erich
name: Sulejmanpasic, Tin
Publisher: name: arXiv
Year: 2015
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: We study strings between static quarks in QCD with $n_f$ adjoint fermions, including $N=1$ Super Yang-Mills (SYM), in the calculable regime on $\mathbb R^3\times \mathbb S^1$. We find that they have many qualitatively new features not previously known. The difference from other realizations of abelian confinement is due to the composite nature of magnetic bions, whose Dirac quantum with fundamental quarks is two, and to the unbroken part of the Weyl group. In particular we show that strings are composed of two domain walls, that quarks are not confined on domain walls, that strings can end on domain walls, and that "Y" or "$Δ$" baryons can form. We briefly discuss their lightest modes and decompactification limit.
description: 5 pages, 4 figures. Accepted for publication at PRD rapid communications. The latest version has a corrected type-o and a changed title to agree with the version to be published
Critical behaviour in charging of electric vehicles
Creators: name: Carvalho, Rui
name: Buzna, Lubos
name: Gibbens, Richard
name: Kelly, Frank
Publisher: name: arXiv
Year: 2015
Subjects: subject: Optimization and Control (math.OC)
subject: Systems and Control (eess.SY)
subject: Physics and Society (physics.soc-ph)
subject: FOS: Mathematics
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Physical sciences

description: The increasing penetration of electric vehicles over the coming decades, taken together with the high cost to upgrade local distribution networks and consumer demand for home charging, suggest that managing congestion on low voltage networks will be a crucial component of the electric vehicle revolution and the move away from fossil fuels in transportation. Here, we model the max-flow and proportional fairness protocols for the control of congestion caused by a fleet of vehicles charging on two real-world distribution networks. We show that the system undergoes a continuous phase transition to a congested state as a function of the rate of vehicles plugging to the network to charge. We focus on the order parameter and its fluctuations close to the phase transition, and show that the critical point depends on the choice of congestion protocol. Finally, we analyse the inequality in the charging times as the vehicle arrival rate increases, and show that charging times are considerably more equitable in proportional fairness than in max-flow.
description: 19 pages, 6 figures
Supporting Multiparty Signing over Named Data Networking
Creators: name: Zhang, Zhiyi
name: Liu, Siqi
name: King, Randy
name: Zhang, Lixia
Publisher: name: arXiv
Year: 2021
Subjects: subject: Cryptography and Security (cs.CR)
subject: Networking and Internet Architecture (cs.NI)
subject: FOS: Computer and information sciences

description: Modern digitally controlled systems require multiparty authentication and authorization to meet the desired security requirement. This paper describes the design and development of NDN-MPS, an automated solution to support multiparty signature signing and verification for NDN-enabled applications. NDN-MPS suggests several changes and extensions to the existing NDN security solutions. First, it introduces a new type of trust schema to support signing and verification for multiple signers under complex policies such as threshold schemes. Second, it extends the NDN signature format to accommodate multisignature schemes such as BLS signature. Third, it introduces a signature collection protocol to solicit signatures securely from multiple signers. We further evaluate NDN-MPS by assessing its security properties and measuring its performance.
Additional file 1 of Importance of ventilation and occupancy to Mycobacterium tuberculosis transmission rates in congregate settings
Creators: name: Deol, A. K.
name: Shaikh, N.
name: Middelkoop, K.
name: Mohlamonyane, M.
name: White, R. G.
name: McCreesh, N.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Table S1. Detailed results for each building. Table S2. Detailed results for each vehicle. Rebreathed air calculation. Fig. S1. Estimated transmission rate against mean CO2 concentrations by building and vehicle.
White paper on advances in Absolute Salinity measurements
Creators: name: Marc, Le Menn
name: Seitz Steffen
name: Nair Rajesh
name: Ntoumas Manolis
Publisher: name: Zenodo
Year: 2023
Subjects: Absolute salinity
speed of sound
Refractometer
Interferometer
Optical fiber
Density

description: This document is MINKE’s Deliverable 9.1: “White paper on advances in Absolute Salinity measurements”. It describes the state-of-the-art in the measurement of Absolute Salinity in seawater.
Additional file 1 of Large-scale and small-scale population genetic structure of the medically important gastropod species Bulinus truncatus (Gastropoda, Heterobranchia)
Creators: name: Maes, Tim
name: De Corte, Zoë
name: Vangestel, Carl
name: Virgilio, Massimiliano
name: Smitz, Nathalie
name: Djuikwo-Teukeng, Félicité F.
name: Papadaki, Maria Ioanna
name: Huyse, Tine
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Table S1. Sample list and information.
PEARL: Data Synthesis via Private Embeddings and Adversarial Reconstruction Learning
Creators: name: Liew, Seng Pei
name: Takahashi, Tsubasa
name: Ueno, Michihiko
Publisher: name: arXiv
Year: 2021
Subjects: subject: Machine Learning (cs.LG)
subject: Cryptography and Security (cs.CR)
subject: FOS: Computer and information sciences

description: We propose a new framework of synthesizing data using deep generative models in a differentially private manner. Within our framework, sensitive data are sanitized with rigorous privacy guarantees in a one-shot fashion, such that training deep generative models is possible without re-using the original data. Hence, no extra privacy costs or model constraints are incurred, in contrast to popular approaches such as Differentially Private Stochastic Gradient Descent (DP-SGD), which, among other issues, causes degradation in privacy guarantees as the training iteration increases. We demonstrate a realization of our framework by making use of the characteristic function and an adversarial re-weighting objective, which are of independent interest as well. Our proposal has theoretical guarantees of performance, and empirical evaluations on multiple datasets show that our approach outperforms other methods at reasonable levels of privacy.
description: 22 pages, 10 figures, accepted to ICLR 2022
25. Prevalence, clinical phenotype and complications of large vessel giant cell arteritis: systematic review and meta-analysis
Creators: name: Lyne1, Suellen
name: Carlee Ruediger1, 2
name: Susan Lester1,2,
name: Gursimran Kaur3, 4
name: Lisa Stamp3, 4
name: E. Michael Shanahan5, 6
name: Catherine Hill1,2,7
Publisher: name: Zenodo
Year: 2022
Subjects: Vasculitis
ANCA
Abstracts
Giant Cell Arthritis
MPA
GPA
EGPA
Takayasu
IgA vasculitis

description: Background: Giant Cell Arteritis (GCA) is a heterogenous systemic granulomatous vasculitis involving the aorta and any of its major tributaries. Despite increased awareness of large vessel involvement, studies reporting incidence, clinical characteristics and complications of large-vessel GCA (LV-GCA) show conflicting results due to inconsistent disease definitions, differences in study methodologies and the broad spectrum of clinical presentations. The aim of this systematic literature review was to better define LV-GCA based on the available literature. Methods: Published studies indexed in MEDLINE and EMBASE were searched from database inception to 9 May 2021. Studies were included if they presented cohort or cross-sectional data on a minimum of 25 patients with LV-GCA and reported on epidemiology, clinical presentation, diagnosis, treatment and/or complications. Control groups were included if data was available on patients with limited cranial GCA (C-GCA). Covidence was utilized to assist with study selection and data extraction (https://www.covidence.org/) and data was quantitatively synthesised with application of a random effects meta-regression model to account for differences in variance and quality between studies, using Stata. Results: The search yielded 3,488 results, of which 46 were included. 1,012 duplicates were removed and a further 2,430 did not meet eligibility criteria. Diagnostic criteria for LV-GCA differed between papers but was typically dependent on imaging or histopathology. Patients with LV-GCA were generally younger at diagnosis compared to C-GCA patients (69.8 vs 73.6 years), had longer delay to diagnosis (3.75 vs 1.6 months) and lower rates of positive temporal artery biopsy (OR 0.52, 95% CI: 0.3, 0.92). Fewer LV-GCA patients presented with cranial manifestations such as headache (OR 0.23, 95% CI: 0.17, 0.32) and only 53% met the 1990 ACR Classification Criteria for GCA, where it was not required as inclusion criteria. Vasculitis was detected most commonly in the thoracic aorta, followed by the subclavian, brachiocephalic trunk and axillary arteries. The cumulative mean prednisolone dose at 12-months was 8430mg for LV-GCA patients, 47% experienced at least 1 relapse, and 25% of deaths observed during follow-up were directly attributable to LV-GCA. Conclusions: Patients with LV-GCA have distinct disease features when compared to C-GCA, and this has implications on diagnosis, treatment strategies and surveillance of long term sequalae. Disclosures: None
Additional file 3 of Large-scale and small-scale population genetic structure of the medically important gastropod species Bulinus truncatus (Gastropoda, Heterobranchia)
Creators: name: Maes, Tim
name: De Corte, Zoë
name: Vangestel, Carl
name: Virgilio, Massimiliano
name: Smitz, Nathalie
name: Djuikwo-Teukeng, Félicité F.
name: Papadaki, Maria Ioanna
name: Huyse, Tine
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3: Figure S1. Neighbour Joining (NJ) tree representing K2P genetic distances among vouchers considered in this study (blue dots) and 181 public reference sequences ( http://www.boldsystems.org/ ) from 14 Bulinus genera (B. truncatus, B. africanus, B. barthi, B. camerunensis, B. cernicus, B. forskalii, B. globosus, B. nasutus, B. natalensis, B. nyassanus, B. senegalensis, B. tropicus, B. umbilicatus, B. wrighti).
D8.4 Evaluation of Kownledge Transfer materials deployed in Cos4Cloud (grant 863463)
Creators: name: Liñán, Sonia
name: Justamante, Ángela
name: Fabó, Claudia
name: Soacha, Karen
name: Hernández, Miguel
name: Piera, Jaume
Publisher: name: Zenodo
Year: 2023
Subjects: KT
Knowledge Transfer
Citizen Sciece
EOSC

description: This Knowledge Transfer Report describes and evaluate Knowledge Transfer activities undertaken by the Cos4Cloud project. Cos4Cloud's methodology to develop and monitor its KT strategy was based on common practices implemented by the H2020 community and on requirements and recommendations from the funding agency, the European Commission. It is important to underline that some aspects of a KT strategy cannot be evaluated quantitatively and have been challenging to measure. Having said that, the Cos4Cloud methodology for KT transfer and its evaluation has proven itself effective for keeping track of the consortium efforts in KT, monitoring the Cos4Cloud KT activities and whether they were aligned with the target stakeholders and the KT goals, as well as to adjust the strategy if necessary. Implementing and evaluating the Cos4Cloud Knowledge Transfer framework has been a unique opportunity to understand KT within the project, providing us with some practical lessons to make this transfer effective. In the case of Cos4Cloud, setting up clear KT Outputs and key stakeholders was crucial for developing the project’s KT strategy and involving all the consortium members in its implementation. Besides, in Cos4Cloud, the events were key for the success of the KT strategy; they allowed us to be in direct contact with the community and make this transfer more effective.
Orbital angular momentum in a nonchiral topological superconductor
Creators: name: Shitade, Atsuo
name: Nagai, Yuki
Publisher: name: arXiv
Year: 2015
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We investigate the bulk orbital angular momentum in a two-dimensional time-reversal broken topological superconductor with the Rashba spin-orbit interaction, the Zeeman interaction, and the $s$-wave pairing potential. Prior to the topological phase transition, we find the crossover from $s$ wave to $p$ wave. For the large spin-orbit interaction, even in the topological phase, $L_z/N$ does not reach $-1/2$, which is the intrinsic value in chiral $p$-wave superconductors. Here $L_z$ and $N$ are the bulk orbital angular momentum and the total number of electrons at zero temperature, respectively. Finally, we discuss the effects of nonmagnetic impurities.
description: 7 pages, 5 figures, 1 table
D.8.3 Project video of Cos4Cloud project (grant 863463)
Creators: name: Justamante, Ángela
name: Liñán, Sonia
name: Soacha, Karen
name: Woods, Tim
name: Leymarie, Frederic Fol
name: Ramón, Anna
name: Piera, Jaume
Publisher: name: Zenodo
Year: 2022
Subjects: Citizen Science, Citizen Engagement, Science Communication, Participatory Science, Cos4Cloud

description: The objective of the deliverable D8.3, produced within the package WP8, is to present a comprehensive promotional video explaining the Cos4Cloud project in two minutes to a general public audience; it is also an invitation to be part of our community and participate in our activities. The video includes English, Spanish, Catalan, French, German, Swedish, Greek and Dutch subtitles, all the Consortium languages. D8.3 includes the project video script and the link to the video without subtitles, it also incorporates a small communication plan to promote the video and the Key Performance Indicators to measure its impact.
 The video has been produced in an animation format by Sci Ani company.
Symmetry inheritance of scalar fields
Creators: name: Smolić, Ivica
Publisher: name: arXiv
Year: 2015
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Matter fields don't necessarily have to share the symmetries with the spacetime they live in. When this happens, we speak of the symmetry inheritance of fields. In this paper we classify the obstructions of symmetry inheritance by the scalar fields, both real and complex, and look more closely at the special cases of stationary and axially symmetric spacetimes. Since the symmetry noninheritance is present in the scalar fields of boson stars and may enable the existence of the black hole scalar hair, our results narrow the possible classes of such solutions. Finally, we define and analyse the symmetry noninheritance contributions to Komar mass and angular momentum of the black hole scalar hair.
description: 22 pages; revised, published version with new results about non-canonical scalar fields
Ab initio construction of magnetic phase diagrams in alloys: The case of Fe$_{1-x}$Mn$_x$Pt
Creators: name: Pujari, B. S.
name: Larson, P.
name: Antropov, V. P.
name: Belashchenko, K. D.
Publisher: name: arXiv
Year: 2015
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: A first-principles approach to the construction of concentration-temperature magnetic phase diagrams of metallic alloys is presented. The method employs self-consistent total energy calculations based on the coherent potential approximation for partially ordered and noncollinear magnetic states and is able to account for competing interactions and multiple magnetic phases. Application to the Fe$_{1-x}$Mn$_x$Pt "magnetic chameleon" system yields the sequence of magnetic phases at T=0 and the c-T magnetic phase diagram in good agreement with experiment, and a new low-temperature phase is predicted at the Mn-rich end. The importance of non-Heisenberg interactions for the description of the magnetic phase diagram is demonstrated.
description: 5 pages and 6 figures plus added supplemental material. Post-review version accepted in Phys. Rev. Lett. Improved fitting procedure, some changes in figures
Stacks of Ann-Categories and their morphisms
Creators: name: Aldrovandi, Ettore
Publisher: name: arXiv
Year: 2015
Subjects: subject: Category Theory (math.CT)
subject: Algebraic Geometry (math.AG)
subject: Algebraic Topology (math.AT)
subject: K-Theory and Homology (math.KT)
subject: FOS: Mathematics

description: We show that $\mathit{ann}$-categories admit a presentation by crossed bimodules, and prove that morphisms between them can be expressed by special kinds spans between the presentations. More precisely, we prove the groupoid of morphisms between two $\mathit{ann}$-categories is equivalent to that of bimodule butterflies between the presentations. A bimodule butterfly is a specialization of a butterfly, i.e. a special kind of span or fraction, between the underlying complexes
description: 23 pages. One added section on the class of a stack of ann-categories and Shukla cohomology. One appendix includes an argument courtesy of T. Pirashvili showing the equivalence between Shukla and Andr\'e-Quillen cohomology for associative algebras, when Shukla cohomology is defined via a model structure on DGAs
Additional file 5 of Large-scale and small-scale population genetic structure of the medically important gastropod species Bulinus truncatus (Gastropoda, Heterobranchia)
Creators: name: Maes, Tim
name: De Corte, Zoë
name: Vangestel, Carl
name: Virgilio, Massimiliano
name: Smitz, Nathalie
name: Djuikwo-Teukeng, Félicité F.
name: Papadaki, Maria Ioanna
name: Huyse, Tine
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 5: Figure S3. Log-likelihood probability values (LnP(D)) and ∆K (according to Evanno et al. 2005) as obtained in STRUCTURE with K ranging from 1 to 8 (value obtained by averaging the posterior probabilities of three independent runs).
On Star Expressions and Coalgebraic Completeness Theorems
Creators: name: Schmid, Todd
name: Rot, Jurriaan
name: Silva, Alexandra
Publisher: name: arXiv
Year: 2021
Subjects: subject: Logic in Computer Science (cs.LO)
subject: Formal Languages and Automata Theory (cs.FL)
subject: FOS: Computer and information sciences

description: An open problem posed by Milner asks for a proof that a certain axiomatisation, which Milner showed is sound with respect to bisimilarity for regular expressions, is also complete. One of the main difficulties of the problem is the lack of a full Kleene theorem, since there are automata that can not be specified, up to bisimilarity, by an expression. Grabmayer and Fokkink (2020) characterise those automata that can be expressed by regular expressions without the constant 1, and use this characterisation to give a positive answer to Milner's question for this subset of expressions. In this paper, we analyse Grabmayer and Fokkink's proof of completeness from the perspective of universal coalgebra, and thereby give an abstract account of their proof method. We then compare this proof method to another approach to completeness proofs from coalgebraic language theory. This culminates in two abstract proof methods for completeness, what we call the local and global approaches, and a description of when one method can be used in place of the other.
description: In Proceedings MFPS 2021, arXiv:2112.13746
Governance roadmap for a citizen science network: A proposal for guiding the process
Creators: name: Soacha Godoy, K.
name: Varese, M.
name: Villa, C.
name: Piera, J.
Publisher: name: Zenodo
Year: 2020
Subjects: Citizen science
Knowledge network
Governance network
Participatory science
Knowledge governance

description: This governance roadmap aims to guide people and organizations that wish to create or strengthen a network. It is a proposal for providing a structured framework for instituting governance arrangements. It is made up of a governance -process, roadmap and decision tree- with options to be explored and assessed based on the purpose, needs, and capacities of each network. It addresses aspects such as the definition of organizational approach, operational structure, communication channels, decision-making model and financial sustainability. It was built from the analysis of existing governance models and literature review and has guided the implementation of governance models of three regional networks in Iberoamerica.
description: Want to contribute? Help us to improve the governance roadmap! Share your comments using: Forum: https://foro.cienciaparticipativa.net/t/hoja-de-ruta-de-gobernanza-para-redes-de-ciencia-de-ciudadana/219 Email: governanceroadmap@outlook.com Twitter @adrisoacha The description of the roadmap will be available in the article (in prep.): Governance roadmap for citizen science networks, a proposal for guiding the process.
description: {"references": ["Hufty, M. (2008). A proposal to concretize the concept of governance: The Analytical Framework of Governance', in Governance and governance in the territories of Latin America.", "Provan, K. & Kenis, P. (2008). Modes of Network Governance: Structure, Management, and Effectiveness', Article in Journal of Public Administration Research and Theory doi: 10.1093 / jopart / mum015.", "Soacha, K. (2019). Bases conceptuales y an\u00e1lisis de alternativas: Modelo de gobernanza de la Red de ciencia ciudadana para la Amazon\u00eda. Wildlife Conservation Society (WCS)."]}
D4.1 The SENTINEL services: MVP
Creators: name: Skourtis, Yannis
name: Kavakli, Evangelia
name: Loucopoulos, Peri
name: Dimou, Christos
name: Oudin, Thomas
name: Smyrlis, Michalis
Publisher: name: Zenodo
Year: 2022
Subjects: cybersecurity
gdpr
compliance
smes
dataprotection
product
architecture
sentinelh2020
euprojects
deliverables

description: This report accompanies D4.1, a demonstration, which includes the services which are part of the Minimum Viable Product (MVP) of the SENTINEL project. It is important to note that the technologies and offerings, whose technical descriptions are included in D4.1, are integrally linked and mostly interdependent with their counterpart technologies in D2.1 and D3.1, all of which contribute to and participate in the integrated MVP version which is described in D5.4 (The SENTINEL Minimum Viable Product).
95. Identification of Monocyte Gene Signatures in Blood and Nasal Tissue of ANCA-Associated Vasculitis Patients
Creators: name: Lee1, Jacinta
name: McClure1, Mark
name: Ferdinand1, John R
name: Clatworthy1, Menna R
name: Kenneth GC Smith1, 2
name: David R Jayne1, 3
name: Paul A Lyons1, 2
Publisher: name: Zenodo
Year: 2022
Subjects: Vasculitis
ANCA
Abstracts
Giant Cell Arthritis
MPA
GPA
EGPA
Takayasu
IgA vasculitis

description: Background: ANCA-associated Vasculitis (AAV) is a chronic autoimmune disease, comprising two clinical syndromes, granulomatosis and polyangiitis (GPA) and microscopic polyangiitis (MPA), affecting a variety of organs ranging from the kidney to the respiratory tract that without treatment has a poor prognosis. Although the function of neutrophils in AAV has been well described, the contribution of monocytes and macrophages to disease has received less attention although they have some functional similarities in the context of this disease. Methods: We sought to gain insight into the role monocytes play in the pathogenesis of AAV by exploring transcriptomic profiles of circulating CD14 monocytes generated using either microarray (42 GPA, 30 MPA and 64 healthy controls) or single-cell RNA-Sequencing (14 GPA and 6 healthy controls), and macrophages in matching nasal tissue in the latter cohort. Data analysis was performed using Bioconductor 3.9, and Seurat 4.0 in R (3.6 and 4.0, respectively). Results: Weighted gene co-expression network analysis of the microarray dataset identified two modules of co-expressed genes that were associated with both the presence of disease (Panel A) and its extent as assessed by BVAS and CRP (Panel B and C). Functional annotation of these modules using gene set enrichment suggested they were comprised of genes involved in the complement pathway, and pro-inflammatory pathways, such as IL-6/JAK/STAT3 signalling. The association of these signatures with disease activity was validated in the single-cell RNA-sequencing dataset and preservation of these signatures was seen in the nasal tissue. Conclusions: More biomarkers and prognostic markers are needed in AAV to help physicians better understand each patient’s disease and tailor treatment plans. Monocyte transcription signatures offer the potential as new biomarkers of disease activity and understanding the role of monocytes in AAV pathogenesis and persistence. Disclosures: None
 Image 1. Magenta Signature correlates with Disease Activity
InTheMED D5.3a Report on the Appropriate Innovative Remediation Process Developed
Creators: name: Akrout, Hanene
name: Mellah, Thuraya
name: Baccouche, Hatem
name: Mansouri, Lobna
name: Ghrabi, Ahmed
name: Anyfanti, Ioanna
name: Karatzas, George
name: A. Godoy, Vanessa
name: Uribe-Asarta, Janire
name: Gómez-Hernández, J. Jaime
name: Azevedo, Leonardo
name: Escada, Cláudia
name: Saysel, Ali Kerem
name: Daloğlu Çetinkaya, Irem
name: Uygur, İzel
name: Copty, Nadim
Publisher: name: Zenodo
Year: 2023
Subjects: Water
Innovative
Remediation
Technologies

description: This document collects the work done in the first part of Task 5.3 " Development and Upscaling of Remediation Technologies" and represents both D5.3a Report on the Appropriate Innovative Remediation Process Developed and M5.3a First Draft of the Innovative Remediation Strategies Performed. The aim of this document is to define specific water remediation strategies for the different cases studies of the project. This subtask is based on the results of the training session on sustainable integrated water management and the living lab, which involved stakeholders in a social learning process for the design of new water management in accordance with the 4Rs principle (Reduce, Recycle, Reuse, and Recover). Alternative technologies, specifically for the treatment of industrial wastewater, have been evaluated to establish the most ecoefficient practice.
description: This project is part of the PRIMA Programme supported by the European Union's Horizon 2020 Research and Innovation Programme under Grant Agreement No 1923.
Lattice baryon spectroscopy with multi-particle interpolators
Creators: name: Kiratidis, Adrian L.
name: Kamleh, Waseem
name: Leinweber, Derek B.
name: Owen, Benjamin J.
Publisher: name: arXiv
Year: 2015
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: In 2 + 1 flavour lattice QCD the spectrum of the nucleon is presented for both parities using local meson-baryon type interpolating fields in addition to the standard three-quark nucleon interpolators. The role of local five-quark operators in extracting the nucleon excited state spectrum via correlation matrix techniques is explored on dynamical gauge fields with $m_π$ = 293 MeV, leading to the observation of a state consistent with the S-wave $Nπ$ scattering threshold in the negative-parity sector. Furthermore, the robustness of the variational technique is examined by studying the spectrum on a variety of operator bases. Fitting a single-state ansatz to the eigenstate-projected correlators provides robust energies for the low-lying spectrum that are essentially invariant despite being extracted from qualitatively different bases.
description: 13 Pages, 12 Figures, Updated version as appears in PRD
Additional file 6 of Large-scale and small-scale population genetic structure of the medically important gastropod species Bulinus truncatus (Gastropoda, Heterobranchia)
Creators: name: Maes, Tim
name: De Corte, Zoë
name: Vangestel, Carl
name: Virgilio, Massimiliano
name: Smitz, Nathalie
name: Djuikwo-Teukeng, Félicité F.
name: Papadaki, Maria Ioanna
name: Huyse, Tine
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 6: Figure S4. Maximum likelihood tree reconstruction based on 763 SNPs recovered in the 100% of specimens considered in this study (see text for explanations).
Drive-induced nonlinearities of cavity modes coupled to a transmon ancilla
Creators: name: Zhang, Yaxing
name: Curtis, Jacob C.
name: Wang, Christopher S.
name: Schoelkopf, R. J.
name: Girvin, S. M.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Quantum Physics (quant-ph)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: High-Q microwave cavity modes coupled to transmon ancillas provide a hardware-efficient platform for quantum computing. Due to their coupling, the cavity modes inherit finite nonlinearity from the transmons. In this work, we theoretically and experimentally investigate how an off-resonant drive on the transmon ancilla modifies the nonlinearities of cavity modes in qualitatively different ways, depending on the interrelation among cavity-transmon detuning, drive-transmon detuning and transmon anharmonicity. For a cavity-transmon detuning that is smaller than or comparable to the drive-transmon detuning and transmon anharmonicity, the off-resonant transmon drive can induce multiphoton resonances among cavity and transmon excitations that strongly modify cavity nonlinearities as drive parameters vary. For a large cavity-transmon detuning, the drive induces cavity-photon-number-dependent ac Stark shifts of transmon levels that translate into effective cavity nonlinearities. In the regime of weak transmon-cavity coupling, the cavity Kerr nonlinearity relates to the third-order nonlinear susceptibility function $χ^{(3)}$ of the driven ancilla. This susceptibility function provides a numerically efficient way of computing the cavity Kerr particularly for systems with many cavity modes controlled by a single transmon. It also serves as a diagnostic tool for identifying undesired drive-induced multiphoton resonance processes. Lastly, we show that by judiciously choosing the drive amplitude, a single off-resonant transmon drive can be used to cancel the cavity self-Kerr nonlinearity or the inter-cavity cross-Kerr. This provides a way of dynamically correcting the cavity Kerr nonlinearity during bosonic operations or quantum error correction protocols that rely on the cavity modes being linear.
description: Improved Figs. 4 and 5 compared to the published version