cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Craspedorrhynchus triangularis
Creators: name: Ilieva, Mihaela
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Psocodea
Philopteridae
Craspedorrhynchus
Craspedorrhynchus triangularis

description: Craspedorrhynchus triangularis (Rudow, 1869)
 Report: [1] Touleshkov (1957).
 Host: Circaetus gallicus (Gmelin) [1].
 Distribution in Bulgaria: Chelopechene (Sofia Region) [1].
description: Published as part of Ilieva, Mihaela, 2009, Checklist of the chewing lice (Insecta: Phthiraptera) from wild birds in Bulgaria, pp. 1-66 in Zootaxa 2138 (1) on page 28, DOI: 10.11646/zootaxa.2138.1.1, http://zenodo.org/record/5314302
Experimental observations of topologically guided water waves within non-hexagonal structures
Creators: name: Makwana, Mehul P.
name: Laforge, Nicolas
name: Craster, Richard V.
name: Dupont, Guillaume
name: Guenneau, Sébastien
name: Laude, Vincent
name: Kadic, Muamer
Publisher: name: arXiv
Year: 2019
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We investigate symmetry-protected topological water waves within a strategically engineered square lattice system. Thus far, symmetry-protected topological modes in hexagonal systems have primarily been studied in electromagnetism and acoustics, i.e. dispersionless media. Herein, we show experimentally how crucial geometrical properties of square structures allow for topological transport that is ordinarily forbidden within conventional hexagonal structures. We perform numerical simulations that take into account the inherent dispersion within water waves and devise a topological insulator that supports symmetry-protected transport along the domain walls. Our measurements, viewed with a high-speed camera under stroboscopic illumination, unambiguously demonstrate the valley-locked transport of water waves within a non-hexagonal structure. Due to the tunability of the energy's directionality by geometry, our results could be used for developing highly-efficient energy harvesters, filters and beam-splitters within dispersive media.
Figure S7: Behavioural characterisation of Crmp2S517A mice from Loss of CRMP2 O-GlcNAcylation leads to reduced novel object recognition performance in mice
Creators: name: Villo Muha
name: Williamson, Ritchie
name: Hills, Rachel
name: McNeilly, Alison D.
name: McWilliams, Thomas G.
name: Alonso, Jana
name: Schimpl, Marianne
name: Aneika C. Leney
name: Heck, Albert J. R.
name: Sutherland, Calum
name: Read, Kevin D.
name: McCrimmon, Rory J.
name: Brooks, Simon P.
name: Aalten, Daan M. F. Van
Publisher: name: The Royal Society
Year: 2019
Subjects: Molecular Biology

description: Figure S7: Behavioural characterisation of Crmp2S517A mice. (a)–(c) Open filed test, (male, WT, n = 12; Crmp2S517A, n = 10; mean ± SD) 15 minutes of testing. (a) Open filed test. (b) WT (20 ± 8) and Crmp2S517A (22 ± 7) mice spent similar amounts of time in the center of the test arena. (c) WT (85 ± 9) and Crmp2S517A (84 ± 12) animals spent similar amounts of time moving in the periphery. (j)–(l) Plus maze test, (male, WT, n = 12; Crmp2S517A, n = 10) 15 minutes of testing; mean ± SD. (d) Plus maze test. (e) WT (52 ± 11 %) and Crmp2S517A (57 ± 11 %) perform similar alternation. (f) WT (57 ± 10) and Crmp2S517A (54 ± 11) complete similar total number of arm entries.
Additional file 1 of Proteinuria may be an indicator of adverse pregnancy outcomes in patients with preeclampsia: a retrospective study
Creators: name: Tingting Lei
name: Qiu, Ting
name: Wanyu Liao
name: Kangjie Li
name: Xinyue Lai
name: Hongbo Huang
name: Yuan, Rui
name: Chen, Ling
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Pharmacology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy

description: Additional file 1: Correlation test between various diagnostic indicators and adverse outcomes. Relationship between 24 h urine protein cutoff value based on ROC curve and pregnant outcomes. Fig1. 24 h proteinuria cutoff value to determing hypoproteinemia. Fig2. 24 h proteinuria cutoff value to determine adverse outcomes.
Public Preferences for Improving Water Quality in Spring-Fed Recreational Areas
Creators: name: Smith Thomas, Victoria
name: Solís, Daniel
name: Thomas, Michael
name: Smith Thomas, Victoria
name: Solís, Daniel
name: Thomas, Michael
Publisher: name: Unknown
Year: 2015
Subjects: subject: Environmental Economics and Policy
subject: Willingness-to-Pay
subject: Hydrilla
subject: Florida

description: This study uses contingent valuation to determine consumer’s willingness-to-pay (WTP) for reducing hydrilla in two alternative spring-fed river systems in Northwest Florida - the Wacissa River (an open access park) and the Wakulla Springs (a gated park). Two dissimilar payment vehicles -gate and power bill fees- are used to assess the economic value of reducing the density of this aquatic weed. A total sample of 317 recreational users was used to estimate their WTP for a 50% reduction in the density of hydrilla. Our results show a favorable response from consumers to pay for a hydrilla reduction program. Specifically, at Wakulla Springs, the average WTP is $1.63 for monthly power bill surcharge and $3.76 for per trip gate fee. Conversely, at the Wacissa River the average WTP is $1.49 power bill surcharge. This study also analyzes the determinants affecting consumer’s WTP. Our results show that respondents who are from the local surrounding area are more likely to participate and pay a program to reduce hydrilla. In addition, the amenities available in the park also influence consumer’s WTP. Policy implications stemming from these results are also discussed.
Cuclotogaster cinereus
Creators: name: Ilieva, Mihaela
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Psocodea
Philopteridae
Cuclotogaster
Cuclotogaster cinereus

description: Cuclotogaster cinereus (Nitzsch, 1866)
 Reports: [1] Touleshkov (1959а); [2] Touleshkov (1964a); [3] Touleshkov (1974).
 Host: Coturnix coturnix (L.) [1, 2, 3].
 Distribution in Bulgaria: Sofia, Belchin, Kovachevci, Mramor (Sofia Region) [1]; Granitovo (Yambol Region) [2]; Zamfirovo (Montana Region) [3].
description: Published as part of Ilieva, Mihaela, 2009, Checklist of the chewing lice (Insecta: Phthiraptera) from wild birds in Bulgaria, pp. 1-66 in Zootaxa 2138 (1) on page 28, DOI: 10.11646/zootaxa.2138.1.1, http://zenodo.org/record/5314302
Optimized post Gaussian approximation in the background field method
Creators: name: Rakhimov, A.
name: Yee, Jae Hyung
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We have extended the variational perturbative theory based on the back ground field method to include the optimized expansion of Okopinska and the post Gaussian effective potential of Stansu and Stevenson. This new method provides much simpler way to compute the correction terms to the Gausssian effective action (or potential). We have also renormalized the effective potential in 3+1 dimensions by introducing appropriate counter terms in the lagrangian
description: 21 pages, including 5 figures, RevTex. The section III revised
Reflection spectra of thick accretion disks
Creators: name: Riaz, Shafqat
name: Ayzenberg, Dimitry
name: Bambi, Cosimo
name: Nampalliwar, Sourabh
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Relativistic reflection features are commonly observed in the X-ray spectra of stellar-mass and supermassive black holes and originate from illumination of the inner part of the accretion disk by a hot corona. All the available relativistic reflection models assume that the disk is infinitesimally thin and the inner edge is at the innermost stable circular orbit or at a larger radius. However, we know that several sources, especially among supermassive black holes, have quite high mass accretion rates. In such a case, the accretion disk becomes geometrically thick and the inner edge of the disk is expected to be inside the innermost stable circular orbit. In this work, we employ the Polish donut model to describe geometrically thick disks and we study the iron line shapes from similar systems. We also simulate full reflection spectra and we analyze the simulated observations with a thin disk relativistic reflection model to determine the impact of the disk structure on the estimation of the model parameters, in particular in the case of tests of the Kerr hypothesis.
description: 11 pages, 6 figures. v2: refereed version
High order corrections for top quark and jet production at the Tevatron
Creators: name: Kidonakis, Nikolaos
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: An overview of the theoretical status of the top quark and single-jet inclusive production cross sections at the Tevatron is presented. NLO results as well as NNLO-NNLL and higher order threshold expressions derived from resummation calculations are discussed. Numerical results are presented for top quark production at the Tevatron, and it is shown that higher orders contribute sizable corrections to the total cross section and differential distributions, and they also dramatically reduce the factorization scale dependence of the cross section. For jet production, the scale dependence is also reduced but the NNLO threshold corrections are not very big.
description: 3 pages RevTeX4, 4 eps figures, Contributed to the Proceedings of Snowmass 2001, The Future of Particle Physics, Snowmass Village, Colorado, 30 Jun - 21 Jul 2001
Figure S5: Crmp2S517A mice in 87.5% BL57/6j genetic background show no alteration in weight.; Figure S6 from Loss of CRMP2 O-GlcNAcylation leads to reduced novel object recognition performance in mice
Creators: name: Villo Muha
name: Williamson, Ritchie
name: Hills, Rachel
name: McNeilly, Alison D.
name: McWilliams, Thomas G.
name: Alonso, Jana
name: Schimpl, Marianne
name: Aneika C. Leney
name: Heck, Albert J. R.
name: Sutherland, Calum
name: Read, Kevin D.
name: McCrimmon, Rory J.
name: Brooks, Simon P.
name: Aalten, Daan M. F. Van
Publisher: name: The Royal Society
Year: 2019
Subjects: Molecular Biology

description: Figure S5: Crmp2S517A mice in 87.5% BL57/6j genetic background show no alteration in weight. (a) Comparison of the body weights of WT and Crmp2S517A mice in 87.5 % BL57/6j genetic background at 15 weeks of age. Data are expressed as the mean ± SD; unpaired, two-tailed t-test (male, p = 0.06; WT, n = 7; Crmp2S517A, n = 7).; Figure S6: Histological analysis of brain samples from WT and Crmp2S517A mice. (a) Cresyl Violet staining, Neuronal cells per mm3 in the hippocampus. WT (570 ± 190 *103) and Crmp2S517A (550 ± 210 *103). (b) Cresyl Violet staining, Glia cells per mm3 in the hippocampus. WT (800 ± 240 *103) and Crmp2S517A (750 ± 320 *103). (c) NeuN antibody labelling, Neuronal cells per mm3 in the dentate gyrus. WT (80 ± 7 *103) and Crmp2S517A (81 ± 26 *103).
Correcting for Model Changes in Statistical Postprocessing -- An approach based on Response Theory
Creators: name: Demaeyer, Jonathan
name: Vannitsem, Stéphane
Publisher: name: arXiv
Year: 2019
Subjects: subject: Atmospheric and Oceanic Physics (physics.ao-ph)
subject: FOS: Physical sciences

description: For most statistical postprocessing schemes used to correct weather forecasts, changes to the forecast model induce a considerable reforecasting effort. We present a new approach based on response theory to cope with slight model changes. In this framework, the model change is seen as a perturbation of the original forecast model. The response theory allows us then to evaluate the variation induced on the parameters involved in the statistical postprocessing, provided that the magnitude of this perturbation is not too large. This approach is studied in the context of simple Ornstein-Uhlenbeck models, and then on a more realistic, yet simple, quasi-geostrophic model. The analytical results for the former case help to pose the problem, while the application to the latter provide a proof-of-concept and assesses the potential performances of response theory in a chaotic system. In both cases, the parameters of the statistical postprocessing used - an Error-in-Variables Model Output Statistics (EVMOS) - are appropriately corrected when facing a model change. The potential application in an operational environment is also discussed.
description: 33 pages, 11 figures. Accepted for publication in Nonlinear Processes in Geophysics
Bragg spectroscopy of the multi-branch Bogoliubov spectrum of elongated Bose-Einstein condensates
Creators: name: Steinhauer, J.
name: Katz, N.
name: Ozeri, R.
name: Davidson, N.
name: Tozzo, C.
name: Dalfovo, F.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We measure the response of an elongated Bose-Einstein condensate to a two-photon Bragg pulse. If the duration of the pulse is long, the total momentum transferred to the condensate exhibits a nontrivial behavior which reflects the structure of the underlying Bogoliubov spectrum. It is thus possible to perform a spectroscopic analysis in which axial phonons with different number of radial nodes are resolved. The local density approximation is shown to fail in this regime, while the observed data agrees well with the results of simulations based on the numerical solution of the Gross-Pitaevskii equation.
Additional file 1 of Cervico-thoracic pain and associated impairments in air force personnel: a cross-sectional study
Creators: name: Tegern, Matthias
name: Aasa, Ulrika
name: Larsson, Helena
Publisher: name: figshare
Year: 2021
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Physiology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1.
Networks of hybrid open systems
Creators: name: Lerman, Eugene
name: Schmidt, James
Publisher: name: arXiv
Year: 2019
Subjects: subject: Dynamical Systems (math.DS)
subject: Category Theory (math.CT)
subject: Optimization and Control (math.OC)
subject: FOS: Mathematics

description: We generalize the results of "Networks of open systems" by the first author to the setting of hybrid systems. In particular we introduce the notions of hybrid open systems, their networks and maps between networks. A network of systems is a blueprint for building a larger system out of smaller subsystems by specifying a pattern of interactions between subsystems --- an interconnection map. Maps between networks allow us to produce maps between complex hybrid dynamical systems by specifying maps between their subsystems
description: v2: 44 pages, expository changes, comments are welcome
Additional file 2 of Neutralization diversity of HIV-1 Indian subtype C envelopes obtained from cross sectional and followed up individuals against broadly neutralizing monoclonal antibodies having distinct gp120 specificities
Creators: name: Ranajoy Mullick
name: Sutar, Jyoti
name: Nitin Hingankar
name: Suprit Deshpande
name: Thakar, Madhuri
name: Sahay, Seema
name: Ringe, Rajesh P.
name: Sampurna Mukhopadhyay
name: Patil, Ajit
name: Shubhangi Bichare
name: Kailapuri G. Murugavel
name: Aylur K. Srikrishnan
name: Rajat Goyal
name: Sok, Devin
name: Bhattacharya, Jayanta
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 2: Table S2. Mapping key amino acid substitutions associated with resistance to the bnAbs.
Cuclotogaster heterogrammicus
Creators: name: Ilieva, Mihaela
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Psocodea
Philopteridae
Cuclotogaster
Cuclotogaster heterogrammicus

description: Cuclotogaster heterogrammicus (Nitzsch [In Giebel], 1866)
 Reports: [1] Touleshkov (1959а); [2] Touleshkov (1964a); [3] Touleshkov (1974).
 Host: Perdix perdix (L.) [1, 2, 3].
 Distribution in Bulgaria: Sofia, Chelopechene (Sofia Region), Pazardzhik, Kazanlak, Levski [1]; Harmanli [2]; Yankovci (Gabrovo Region), Yagoda (Stara Zagora Region) [3].
 Lice of Cuclotogaster identified to the generic level only were reported from Alectoris graeca (Meisner) (see Touleshkov, 1964a).
description: Published as part of Ilieva, Mihaela, 2009, Checklist of the chewing lice (Insecta: Phthiraptera) from wild birds in Bulgaria, pp. 1-66 in Zootaxa 2138 (1) on page 28, DOI: 10.11646/zootaxa.2138.1.1, http://zenodo.org/record/5314302
Non-Economic Drivers Influencing Farmers' Incentives to Cooperate: Do they Remain Robust through Policy Changes?
Creators: name: May, Daniel E.
name: May, Daniel E.
Publisher: name: Unknown
Year: 2012
Subjects: subject: Agricultural and Food Policy
subject: Farm Management
subject: farm supply cooperatives
subject: policy reforms
subject: social-psychological variables

description: Research has shown that the structure and strategies adopted by cooperatives can be affected by market characteristics (e.g. deregulated versus regulated markets). This study examined the effects of these market characteristics on non-economic drivers that influence farmers’ willingness to participate in cooperation. The example studied was the incentives of ex-sugar beet farmers in the UK to informally cooperate with their neighbors, and whether these incentives changed in response to the EU Sugar Regime Reform of 2006. The method used was regression analysis based on a theoretical behavioral framework. The results revealed that most of the non-economic drivers influencing farmers’ incentives to cooperate before and after the reform were not the same. This finding has implications in relation to the theoretical basis.
Eikonal Evolution and Gluon Radiation
Creators: name: Kovner, Alex
name: Wiedemann, Urs Achim
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We give a simple quantum mechanical formulation of the eikonal propagation approximation, which has been heavily used in recent years in problems involving hadronic interactions at high energy. This provides a unified framework for several approaches existing in the literature. We illustrate this scheme by calculating the total, elastic, inelastic and diffractive DIS cross sections, as well as gluon production in high energy hadronic collisions. From the q-qbar-g-component of the DIS cross sections, we straightforwardly derive low x evolution equations for inelastic and diffractive DIS distribution functions. In all calculations, we provide all order 1/N corrections to the results existing in the literature.
description: 40 pages, LaTeX, 3 eps-figures, typos corrected, to be published in PRD
A self-calibrating, double-ratio method to test tau lepton universality in W boson decays at the LHC
Creators: name: Dysch, S.
name: Wyatt, T. R.
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: Measurements in $W^+W^-$ events at LEP2 and in $B$ hadron semileptonic decays at B factories and LHCb provide intriguing hints of a violation of lepton universality in the charged current coupling of tau leptons relative to those for electrons and muons. We propose a novel, self-calibrating method to test tau lepton universality in $W$ boson decays at the LHC. We compare directly the ratio of the numbers of selected $\ell-τ$ and $e-μ$ final states in di-leptonic $tt$ events with that in $Z/γ^*\rightarrowτ^+τ^-$ events. Here $\ell=e$ or $μ$ and $τ$ is a candidate semi-hadronic tau decay. This "double-ratio" cancels to first order sensitivity to systematic uncertainties on the reconstruction of $e$, $μ$, and $τ$ leptons, thus improving very significantly the precision to which tau lepton universality can be tested in $W$ boson decay branching ratios at the LHC. Using particle-level Monte Carlo events, and a parameterised simulation of detector performance, we demonstrate the effectiveness of the method and estimate the most significant residual sources of uncertainty arising from experimental and phenomenological systematics. Our studies indicate that a single experiment precision on the tau lepton universality test of around 1.4% is achievable with a data set of 140 fb$^{-1}$ at $\sqrt{s}$ = 13 TeV. This would improve significantly upon the precision of 2.5% on the four-experiment combined LEP2 measurements. If the central value of the proposed new measurement were equal to the central value of the LEP2 measurement this would yield an observation of BSM physics at a significance level of around 5 $σ$.
description: 18 pages, 10 figures. 5 tables
Oligopsony Fed Cattle Pricing: _x000B_Did Mandatory Price Reporting Increase Meatpacker Market Power?
Creators: name: Cai, Xiaowei
name: Stiegert, Kyle W.
name: Koontz, Stephen R.
name: Cai, Xiaowei
name: Stiegert, Kyle W.
name: Koontz, Stephen R.
Publisher: name: Unknown
Year: 2011
Subjects: Agricultural marketing

description: The Livestock Mandatory Price Reporting Act became law in April 2001 with the intent to provide more transparent market information to cattle producers. A criticism of mandatory price reporting (MPR) is that the increased price transparency may actually increase oligopsony power exercised by beef packers. We examine beefpacking margins using time periods before and after MPR was implemented with a Markov model that tests for switching between cooperative and noncooperative pricing. Switching is indicative of noncompetitive conduct and we examine the duration and magnitude of market power. One key finding is that market power is two times higher after MPR than before. The second is that, while this study produces some of the largest measures of market power associated with fed cattle pricing, market power remains rather small and is consistent with prior research. Last, we offer the caveat that there is more occurring in fed cattle and beef markets during last 20 year than the transition from voluntary to mandatory price reporting. So MPR is likely not the only cause of increased market power. But there is clearly more market power exercised in fed cattle markets after 2001 than before.
Additional file 1 of First report of three species of Trichoderma isolated from the rhizosphere in Algeria and the high antagonistic effect of Trichoderma brevicompactum to control grey mould disease of tomato
Creators: name: Massinissa Hammad
name: Guillemette, Thomas
name: Meriem Alem
name: Bastide, Franck
name: Meriem Louanchi
Publisher: name: figshare
Year: 2021
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 1: Table S1. Origin of Botrytis cinerea isolates. Table S2. Origin, identification and code accession GenBank of Trichoderma spp. isolated in Algeria.
Cuculicola latirostris
Creators: name: Ilieva, Mihaela
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Psocodea
Philopteridae
Cuculicola
Cuculicola latirostris

description: Cuculicola latirostris (Burmeister, 1838)
 Reports: [1] Balát (1958); [2] Touleshkov (1963); [3] Touleshkov (1964a); [4] Touleshkov (1974).
 Host: Cuculus canorus L. [1, 2, 3, 4].
 Distribution in Bulgaria: Primorsko [1]; Gorna Banya, Bistritsa (Sofia Region), Vitosha Mountain, Lovech [2]; Asenovgrad, Ivanovo (Haskovo Region) [3]; Vratsa, Ropot, Mirkovo (Sofia Region) [4].
description: Published as part of Ilieva, Mihaela, 2009, Checklist of the chewing lice (Insecta: Phthiraptera) from wild birds in Bulgaria, pp. 1-66 in Zootaxa 2138 (1) on page 29, DOI: 10.11646/zootaxa.2138.1.1, http://zenodo.org/record/5314302
Supplementary document for Plug-and-Play algorithm for imaging through scattering media - 6288232.pdf
Creators: name: Ma, Kai
name: Wang, Xia
name: He, Si
name: Li, Linhao
Publisher: name: Optica Publishing Group
Year: 2023
Subjects: Uncategorized

description: 1. The preprocessing procedure of PnPGAP-FPR 2. The optical memory effect (OME) range 3. Intermediate results of PnPGAP-FPR 4. Reconstruction results in real laboratory environment
Table S3 from Loss of CRMP2 O-GlcNAcylation leads to reduced novel object recognition performance in mice
Creators: name: Villo Muha
name: Williamson, Ritchie
name: Hills, Rachel
name: McNeilly, Alison D.
name: McWilliams, Thomas G.
name: Alonso, Jana
name: Schimpl, Marianne
name: Aneika C. Leney
name: Heck, Albert J. R.
name: Sutherland, Calum
name: Read, Kevin D.
name: McCrimmon, Rory J.
name: Brooks, Simon P.
name: Aalten, Daan M. F. Van
Publisher: name: The Royal Society
Year: 2019
Subjects: Molecular Biology

description: O-GlcNAcylation is an abundant post-translational modification in the nervous system, linked to both neurodevelopmental and neurodegenerative disease. However, the mechanistic links between these phenotypes and site-specific O-GlcNAcylation remains largely unexplored. Here, we show that Ser517 O-GlcNAcylation of the microtubule-binding protein Collapsin Response Mediator Protein-2 (CRMP2) increases with age. By generating and characterizing a Crmp2S517A knock-in mouse model, we demonstrate that loss of O-GlcNAcylation leads to a small decrease in body weight and mild memory impairment, suggesting that S517 O-GlcNAcylation has a small but detectable impact on mouse physiology and cognitive function.
Gauged $L_μ- L_τ$ with Large Muon Anomalous Magnetic Moment and the Bimaximal Mixing of Neutrinos
Creators: name: Ma, Ernest
name: Roy, D. P.
name: Roy, Sourov
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We consider the gauging of $L_μ- L_τ$ as an explanation of a possibly large muon anomalous magnetic moment. We then show how neutrino masses with bimaximal mixing may be obtained in this framework. We study the novel phenomenology of the associated gauge boson in the context of present and future high-energy collider experiments.
description: Latex, 10 pages, 2 axodraw and 3 eps figures, minor clarifications and references added, final version to be published in PLB
Soil conservation and technical efficiency among hillside farmers in Central America: a switching regression model
Creators: name: Solis, Daniel
name: Bravo-Ureta, Boris E.
name: Quiroga, Ricardo E.
name: Solis, Daniel
name: Bravo-Ureta, Boris E.
name: Quiroga, Ricardo E.
Publisher: name: Unknown
Year: 2007
Subjects: subject: Resource /Energy Economics and Policy
subject: Central America
subject: soil conservation
subject: stochastic frontiers
subject: switching regression
subject: technical efficiency

description: The main objective of this paper is to evaluate and analyse technical efficiency (TE) levels for hillside farmers under different levels of adoption of soil conservation in El Salvador and Honduras. A switching regression model is implemented to examine potential selectivity bias for high and low level adopters, and separate stochastic production frontiers, corrected for selectivity bias, are estimated for each group. The main results indicate that households with above-average adoption show statistically higher average TE than those with lower adoption. Households with higher adoption have smaller farms and display the highest partial output elasticity for land. Constraints in the land and credit markets are likely explanations for these differences. In addition, all estimated models show that TE has a positive and significant association with education and extension.
Efficient analytic second derivative of electrostatic embedding QM/MM energy: normal mode analysis of plant cryptochrome
Creators: name: Schwinn, Karno
name: Ferré, Nicolas
name: Huix-Rotllant, Miquel
Publisher: name: arXiv
Year: 2019
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: Analytic second derivatives of electrostatic embedding (EE) quantum mechanics/molecular mechanics (QM/MM) energy are important for performing vibrational analysis and simulating vibrational spectra of quantum systems interacting with an environment represented as a classical electrostatic potential. The main bottleneck of EE-QM/MM second derivatives is the solution of coupled perturbed equations for each MM atom perturbation. Here, we exploit the Q-vector method {[J. Chem. Phys., 151, 041102 (2019)]} to workaround this bottleneck. We derive the full analytic second derivative of the EE-QM/MM energy, which allows to compute QM, MM and QM-MM Hessian blocks in an efficient and easy to implement manner. To show the capabilities of our method, we compute the normal modes for the full \textit{arabidopsis thaliana} plant cryptochrome. We show that the flavin adenine dinucleotide vibrations (QM subsystem) strongly mix with protein modes. We compute approximate vibronic couplings for the lowest bright transition, from which we extract spectral densities and the homogeneous broadening of FAD absorption spectrum in protein using vibrationally resolved electronic spectrum simulations.
description: 12 pages, 5 figures
Cummingsiella ambigua
Creators: name: Ilieva, Mihaela
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Psocodea
Philopteridae
Cummingsiella
Cummingsiella ambigua

description: Cummingsiella ambigua (Burmeister, 1838)
 Reports: [1] Touleshkov (1964a); [2] Touleshkov (1964b).
 Host: Gallinago gallinago (L.) [1, 2].
 Distribution in Bulgaria: Dinkata (Pazardzhik Region) [1]; Ravno Pole, Dolni Bogrov (Sofia Region) [2].
description: Published as part of Ilieva, Mihaela, 2009, Checklist of the chewing lice (Insecta: Phthiraptera) from wild birds in Bulgaria, pp. 1-66 in Zootaxa 2138 (1) on page 29, DOI: 10.11646/zootaxa.2138.1.1, http://zenodo.org/record/5314302
Figure S1: Purification and site mapping of O-GlcNAc CRMP2 from Loss of CRMP2 O-GlcNAcylation leads to reduced novel object recognition performance in mice
Creators: name: Villo Muha
name: Williamson, Ritchie
name: Hills, Rachel
name: McNeilly, Alison D.
name: McWilliams, Thomas G.
name: Alonso, Jana
name: Schimpl, Marianne
name: Aneika C. Leney
name: Heck, Albert J. R.
name: Sutherland, Calum
name: Read, Kevin D.
name: McCrimmon, Rory J.
name: Brooks, Simon P.
name: Aalten, Daan M. F. Van
Publisher: name: The Royal Society
Year: 2019
Subjects: Molecular Biology

description: Figure S1: Purification and site mapping of O-GlcNAc CRMP2 (a) CRMP2 purified via ion exchange chromatography was subjected to O-GlcNAc enrichment using CpOGAD298N-GST fusion protein. O-GlcNAcylated CRMP2 is approximately 2000-fold enriched via this method suggesting low stoichiometry for CRMP2 O-GlcNAcylation in vivo. (b) ETD-MS/MS spectrum of O-GlcNAcylation site on CRMP2. The spectrum shows the c+1 fragment ions in orange, the y+1 ions in blue and the z+1 in green, which unequivocally assign the O-GlcNAc site to Ser517 (see table). Zoom in of the spectrum highlighting the ions assigned to each individual amino acid, including the O-GlcNAcylated Ser517.
Flavor without Flavor Symmetry
Creators: name: Barr, S. M.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Non-trivial patterns of quark and lepton masses and mixings can arise without there being any underlying flavor symmetry that distinguishes among the three families. Two realistic examples are given.
description: 13 pages, LaTex
Toric ideals of Minkowski sums of unit simplices
Creators: name: Higashitani, Akihiro
name: Ohsugi, Hidefumi
Publisher: name: arXiv
Year: 2019
Subjects: subject: Combinatorics (math.CO)
subject: Commutative Algebra (math.AC)
subject: Algebraic Geometry (math.AG)
subject: FOS: Mathematics

description: In this paper, we discuss the toric ideals of Minkowski sums of unit simplices. More precisely, we prove that the toric ideal of Minkowski sum of unit simplices has a squarefree initial ideal and is generated by quadratic binomials. Moreover, we also prove that Minkowski sums of unit simplices have the integer decomposition property. Those results are a partial contribution to Oda conjecture and Bøgvad conjecture.
description: 8 pages
Supplementary document for Microlens-assisted dark-field microscopy based on a fully immersed low refractive index microlens - 6315940.pdf
Creators: name: Wang, Jianguo
name: Jiang, Rui
name: Yang, Songlin
name: Cao, Yurong
name: Ye, Yong-Hong
Publisher: name: Optica Publishing Group
Year: 2023
Subjects: Uncategorized

description: Supplement 1
Series expansion of the quark determinant in the number of quark-antiquark pairs
Creators: name: Palumbo, F.
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: We propose a formulation of the QCD partition function which leads to a series expansion of the quark determinant in any given baryonic sector. The r-th term gives the gauge-invariant contribution of the valence quarks plus r quark-antiquark pairs. This expansion can be used to investigate any baryonic sector, starting from the nucleon up to high baryonic densities.
Additional file 2 of First report of three species of Trichoderma isolated from the rhizosphere in Algeria and the high antagonistic effect of Trichoderma brevicompactum to control grey mould disease of tomato
Creators: name: Massinissa Hammad
name: Guillemette, Thomas
name: Meriem Alem
name: Bastide, Franck
name: Meriem Louanchi
Publisher: name: figshare
Year: 2021
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 2: Figure S1. Neighbor-joining phylogenetic tree of Trichoderma spp. constructed with rpb2 sequences. Bootstrap support values higher than 75 % from 1000 replicates are indicated on relevant tree branches. Figure S2. Neighbor-joining phylogenetic tree of Trichoderma spp. constructed with acl1 sequences. Bootstrap support values higher than 75 % from 1000 replicates are indicated on relevant tree branches. Figure S3. Neighbor-joining phylogenetic tree of Trichoderma spp. constructed with ITS sequences. Bootstrap support values higher than 75 % from 1000 replicates are indicated on relevant tree branches.
Help Them Understand: Testing and Improving Voice User Interfaces
Creators: name: Guglielmi, Emanuela
name: Rosa, Giovanni
name: Scalabrino, Simone
name: Bavota, Gabriele
name: Oliveto, Rocco
Publisher: name: figshare
Year: 2025
Subjects: classificationCode: 461299
subject: Software engineering not elsewhere classified

description: Voice-based virtual assistants are becoming increasingly popular. Such systems provide frameworks to developers for building custom apps. End-users can interact with such apps through a Voice User Interface (VUI), which allows the user to use natural language commands to perform actions. Testing such apps is not trivial: The same command can be expressed in different semantically equivalent ways.In this paper, we introduce VUI-UPSET, an approach that adapts chatbot-testing approaches to VUI-testing. We conducted an empirical study to understand how VUI-UPSET compares to existing approaches in terms of (i) correctness of the generated paraphrases, and (ii) capability of revealing bugs.To this aim, we analyzed 14,898 generated paraphrases for 40 Alexa Skills. Our results show that VUI-UPSET generates more bug-revealing paraphrases than another state-of-the-art approaches.We also tried to use the generated paraphrases to improve the skills. We tried to included in the voice interaction models of the skills (i) only the bug-revealing paraphrases, (ii) all the valid paraphrases. We observed that including only bug-revealing paraphrases is sometimes not sufficient to make all the tests pass.
Impact of Russia and Ukraine on the international price formation and the EU markets - A Model based analysis
Creators: name: Banse, Martin
name: Salamon, Petra
name: Ledebur, Oliver Von
name: Van Leeuwen, Myrna
name: Bouma, Foppe
name: Salputra, Guna
name: Fellmann, Thomas
name: Nekhay, Olexandr
name: Banse, Martin
name: Salamon, Petra
name: Ledebur, Oliver Von
name: Van Leeuwen, Myrna
name: Bouma, Foppe
name: Salputra, Guna
name: Fellmann, Thomas
name: Nekhay, Olexandr
Publisher: name: Unknown
Year: 2012
Subjects: subject: Agricultural and Food Policy
subject: Risk and Uncertainty
subject: Partial equilibrium model
subject: price formation
subject: Russia
subject: Ukraine

description: This paper examines the effect of the future developments of Russian and Ukrainian agricultural sectors and their impact on the world market prices for arable crops. Employed in the study is AGMEMOD, a partial equilibrium economic model of EU agriculture at the Member State level that has been extended by Russia and Ukraine to gain quantitative insights. Vital for the project has also been the integration of an endogenous world market price module including a stylized Rest of the World (ROW) model. In Russia and Ukraine, there is a strong focus on plant production in general and on grain based animal production; Russia and Ukraine are mostly net-exports of those products. Under the baseline, in Russia prices for crops and oilseeds are below the world market price level. In general, the removals of the trade measures in Russia and Ukraine are projected to induce world market prices of cereals and oilseeds to decline.
Jackiw-Teitelboim Model Coupled to Conformal Matter in the Semi-Classical Limit
Creators: name: Moitra, Upamanyu
name: Sake, Sunil Kumar
name: Trivedi, Sandip P.
name: Vishal, V.
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We analyse the Jackiw-Teitelboim model of 2D gravity coupled to $N$ massless free scalar fields in the semi-classical limit. Two systems are studied which essentially differ in the boundary conditions that are imposed. We find that the thermodynamics has interesting differences. We also analyse the response to additional infalling matter which satisfies the null energy condition. The second law is shown to be valid in both systems for the generalised entropy which takes into account the entanglement across the event horizon due to the matter fields. Similarly we find that the generalised entropy increases along future Q-screens in both systems.
description: version 2, references added, typos corrected
The Impact of Trade Liberalization on Persian Rugs: A Policy Analysis Matrix Approach
Creators: name: Najarzadeh, Reza
name: Rezagholizadeh, M.
name: Saghaian, Sayed H.
name: Reed, Michael R.
name: Aghaei, Mina
name: Najarzadeh, Reza
name: Rezagholizadeh, M.
name: Saghaian, Sayed H.
name: Reed, Michael R.
name: Aghaei, Mina
Publisher: name: Unknown
Year: 2011
Subjects: Consumer/Household Economics
International Relations/Trade

description: Persian rugs are woven in different parts of the Islamic Republic of Iran. However, the rugs woven in Eastern Azerbaijan, Esfahan, and Qum have a worldwide reputation. A poliy Analysis Matrix (PAM) is used to study the rug industry in these provinces. Our analysis is concentrated on the most-exported hand-woven rug-named 65-Radj Cheleh Abrishami Silk Flower-using 2006 data. The results indicate that the export competitive indexes for the three provinces are 0.81, 0.88, and 0.93, respectively. Based on these indices the 65-Radj Cheleh Abrishami Silk Flower rug can compete in the world markets. The comparative advantage indices for the three provinces are 0.83, 0.79 and 0.84, respectively. These numbers show that the provinces have a comparative advantage in the production of the rug in question.
Instability of $j= 3/2$ Bogoliubov Fermi-surfaces
Creators: name: Oh, Hanbit
name: Moon, Eun-Gook
Publisher: name: arXiv
Year: 2019
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: Exotic quantum phases including topological states and non-Fermi liquids may be realized by quantum states with total angular momentum $j=3/2$, as manifested in HgTe and pyrochlore iridates. Recently, an exotic superconducting state with non-zero density of states of zero energy Bogoliubov (BG) quasiparticles, Bogoliubov Fermi-surface (BG-FS), was also proposed in a centrosymmetric $j=3/2$ system, protected by a Z$_2$ topological invariant. Here, we consider interaction effects of a centrosymmetric BG-FS and demonstrate its instability by using mean-field and renormalization group analysis. The Bardeen-Cooper-Schrieffer (BCS) type logarithmical enhancement is shown in fluctuation channels associated with inversion symmetry. Thus, we claim that the inversion symmetry instability is an intrinsic characteristic of a BG-FS under generic attractive interactions between BG quasiparticles. In drastic contrast to the standard BCS superconductivity, a Fermi-surface may generically survive even with the instability. We propose the experimental setup, a second harmonic generation experiment with a strain gradient, to detect the instability. Possible applications to iron based superconductors and heavy fermion systems including FeSe are also discussed.
description: 18 pages, 7 figures; Updated version with improved presentation and figures. Few errors and typos are fixed
Cummingsiella ovalis
Creators: name: Ilieva, Mihaela
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Psocodea
Philopteridae
Cummingsiella
Cummingsiella ovalis

description: Cummingsiella ovalis (Scopoli, 1763)
 Report: [1] Touleshkov (1964b).
 Host: Numenius arquata (L.) [1].
 Distribution in Bulgaria: Ravno Pole (Sofia Region) [1].
description: Published as part of Ilieva, Mihaela, 2009, Checklist of the chewing lice (Insecta: Phthiraptera) from wild birds in Bulgaria, pp. 1-66 in Zootaxa 2138 (1) on page 29, DOI: 10.11646/zootaxa.2138.1.1, http://zenodo.org/record/5314302
Normalization of Off-shell Boundary State, g-function and Zeta Function Regularization
Creators: name: Itoyama, H.
name: Oota, T.
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We consider the model in two dimensions with boundary quadratic deformation (BQD), which has been discussed in tachyon condensation. The partition function of this model (BQD) on a cylinder is determined, using the method of zeta function regularization. We show that, for closed channel partition function, a subtraction procedure must be introduced in order to reproduce the correct results at conformal points. The boundary entropy (g-function) is determined from the partition function and the off-shell boundary state. We propose and consider a supersymmetric generalization of BQD model, which includes a boundary fermion mass term, and check the validity of the subtraction procedure.
description: 21 pages, LaTeX, comments and 3 new references added
Very badly ordered cycles of interval maps
Creators: name: Bhattacharya, Sourav
name: Blokh, Alexander
Publisher: name: arXiv
Year: 2019
Subjects: subject: Dynamical Systems (math.DS)
subject: FOS: Mathematics

description: We prove that a periodic orbit $P$ with coprime over-rotation pair is an over-twist periodic orbit iff the $P$-linear map has the over-rotation interval with left endpoint equal to the over-rotation number of $P$. We then show that this result fails if the over-rotation pair of $P$ is not coprime. Examples of patterns with non-coprime over-rotation pairs are given so that these patterns have no block structure over over-twists but have over-rotation number equal to the left endpoint of the forced over-rotation interval (such patterns are called \emph{very badly ordered}). This presents a situation in which the results about over-rotation numbers on the interval and those about classical rotation numbers for circle degree one maps are different. In the end we elucidate a rigorous description of the strongest unimodal pattern that corresponds to a given over-rotation interval and use it to construct unimodal very badly ordered patterns with arbitrary non-coprime over-rotation pair.
description: 19 pages, 5 figures; in this version 4 typos are corrected and one figure is improved; to appear in Journal of Difference Equations and Applications
Photoemission and x-ray absorption study of MgC_(1-x)Ni_3
Creators: name: Kim, J. H.
name: Ahn, J. S.
name: Kim, Jinsoo
name: Park, Min-Seok
name: Lee, S. I.
name: Choi, E. J.
name: Oh, S. -J.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We investigated electronic structure of MgC_(1-x)Ni_3 with photoemission and x-ray absorption spectroscopy. Both results show that overall band structure is in reasonable agreement with band structure calculations including the existence of von Hove singularity (vHs)near E_F. However, we find that the sharp vHs peak theoretically predicted near the E_F is substantially suppressed. As for the Ni core level and absorption spectrum, there exist the satellites of Ni 2p which have a little larger energy separation and reduced intensity compared to the case of Ni-metal. These facts indicate that correlation effects among Ni 3d electrons may be important to understand various physical properties.
description: 12 pages, 4 figures
Figure S2: Site-specific O-GlcNAc-CRMP2 antibody (OG-CRMP2) recognises Ser517 O-GlcNAcylated CRMP2 in vitro and in vivo.; Figure S3 from Loss of CRMP2 O-GlcNAcylation leads to reduced novel object recognition performance in mice
Creators: name: Villo Muha
name: Williamson, Ritchie
name: Hills, Rachel
name: McNeilly, Alison D.
name: McWilliams, Thomas G.
name: Alonso, Jana
name: Schimpl, Marianne
name: Aneika C. Leney
name: Heck, Albert J. R.
name: Sutherland, Calum
name: Read, Kevin D.
name: McCrimmon, Rory J.
name: Brooks, Simon P.
name: Aalten, Daan M. F. Van
Publisher: name: The Royal Society
Year: 2019
Subjects: Molecular Biology

description: Figure S2: Site-specific O-GlcNAc-CRMP2 antibody (OG-CRMP2) recognises Ser517 O-GlcNAcylated CRMP2 in vitro and in vivo. (a) Western blot on in vitro glycosylated recombinant CRMP2 using the OG-CRMP2 antibody. Lack of signal on non-O-GlcNAcylated and Ser517Ala CRMP2 samples indicates that the antibody is specific. (b) Western blot on mouse brain lysate using the OG-CRMP2 antibody showing that the antibody detects O-GlcNAcylated CRMP2 from complex samples. CpOGA treatment removes O-GlcNAc from proteins and the Ser517Ala mutation abolishes O-GlcNAcylation on CRMP2.Supplementary Figure S3: O-GlcNAc-CRMP2 levels in samples from Alzheimer's disease patients. (a) Western blotting for O-GlcNAc-CRMP2 (OG-CRMP2) on post-mortem hippocampus samples from Alzheimer's disease patients (AD) and age-matched non-Alzheimer's disease individuals (CTL) (n = 5, 75-80 years old).