cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Guidance for Sediment Quality Evaluations
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 1998

description: The purpose of this document is to establish practical guidance for the evaluation of sediment  quality to be used in the ecological risk assessment process associated with contaminated sites  under the jurisdiction of the Site Remediation Program (SRP) in the New Jersey Department of  Environmental Protection. Presented are procedures and references that form a framework for  qualitative and quantitative determinations of actual or potential adverse ecological effects and  provide the basis for remedial decision-making and evaluation of injury to natural resources in  sediment media.
MOESM2 of Array comparative genomic hybridization of 18 pancreatic ductal adenocarcinomas and their autologous metastases
Creators: name: Rausch, Valentin
name: Krieg, Andreas
name: Camps, Jordi
name: Behrens, Bianca
name: Beier, Manfred
name: Darawalee Wangsa
name: Heselmeyer-Haddad, Kerstin
name: Baldus, Stephan
name: Knoefel, Wolfram
name: Ried, Thomas
name: Stoecklein, Nikolas
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Cancer
subject: Mental Health
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 2: Table S1. Enriched Gains and Losses (percentage of altered samples, range and involved Genes). A: Enriched Gains in LNM vs. PT. B: Enriched Losses in LNM vs. PT. C: Enriched Gains in OM vs. PT. D: Enriched Losses in PT vs. OM. E: Enriched Losses in LNM vs. OM. F: Enriched Gains in OM vs. LNM. G: Enriched Losses in OM vs. LNM. Table S2. Involved pathways, genes and respective protein class in enriched alterations. A: Altered pathways in enriched Gains (LNM vs PT). B: Altered pathways in enriched Losses (LNM vs PT).
Orbitina Sellier de Civrieux 1977
Creators: name: Mamo, Briony L.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Chromista
Foraminifera
Globothalamea
Rotaliida
Discorbidae
Orbitina

description: Orbitina Sellier de Civrieux 1977
Orbitina parri Collins 1974 (Fig. 19:11–13)
Description. See Collins (1971, p. 46, pl. 3, fig. 36a–c).
Distribution within study area. Orbitina parri Collins 1974 was only collected from site 47 in One Tree Lagoon 3.
description: Published as part of Mamo, Briony L., 2016, Benthic Foraminifera from the Capricorn Group, Great Barrier Reef, Australia, pp. 1-123 in Zootaxa 4215 (1) on pages 81-82, DOI: 10.11646/zootaxa.4215.1.1, http://zenodo.org/record/272923
Soil Cleanup Criteria
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 1999

description: This listing represents the combination of Tables 3-2 and 7-1 from the Department of Environmental Protection and Energy's February 3, 1992  proposed rule entitled Cleanup Standards for Contaminated Sites, N.J.A.C. 7:26D, as corrected based upon errors identified by the Department during  or subsequent to the comment period as well as new toxicological or other information obtained since the rule proposal. Please refer to the respective  footnotes for more detail. Notwithstanding, where the following criteria are based on human health impacts, the Department shall still consider  environmental impacts when establishing site specific cleanup criteria. This along with other site-specific factors including background conditions may  result in site specific cleanup criteria which differ from the criteria listed below. Therefore, this list shall not be assumed to represent approval by the  Department of any remedial action or to represent the Department's opinion that a site requires remediation.
Notocotylus ephemera
Creators: name: Shakarbaev, U. A.
name: Akramova, F. D.
name: Azimov, D. A.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Plagiorchiida
Notocotylidae
Notocotylus
Notocotylus ephemera

description: Notocotylus ephemera (Nitzsch, 1817)
Intermediate host: Pl аnorbis plаnorbis (Gastropoda: Planоrbidae).
Cercarian group: monostome.
Habitat: freshwater.
Definitive host group: birds.
Localities: Republic of Karakalpakstan, Fergana Valley, northeastern part.
References: Nasimov (1967), Arystanov (1969 a, 1976, 1980), Azimov, Kabilov (1977), Shakarboyev et al. (2012).
description: Published as part of Shakarbaev, U. A., Akramova, F. D. & Azimov, D. A., 2020, The Taxonomic Survey Of The Cercarial Fauna (Platyhelminthes, Trematoda) In The Mollusks Of Uzbekistan, pp. 505-522 in Zoodiversity 54 (6) on page 514, DOI: 10.15407/zoo2020.06.505, http://zenodo.org/record/6377780
Highly-expressed circ_0129657 inhibits proliferation as well as promotes apoptosis and inflammation in HBMECs after oxygen-glucose deprivation via miR-194-5p/GMFB axis
Creators: name: Qian, Yun
name: Tang, Bo
name: Zhang, Hao
name: Yang, Hui
Publisher: name: Taylor & Francis
Year: 2023
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Statistics
subject: FOS: Mathematics
subject: Mental Health
subject: Hematology

description: Stroke is an acute cerebrovascular disease that is now the most important cause of death due to brain problems in our country. CircRNAs are RNA circles that have been extensively involved in the disease. We aimed to investigate the mechanism of circ_0129657 in the pathogenesis of stroke. In this study, quantitative real-time polymerase chain reaction (RT-qPCR) and western blot assays were used to assess the expression of circ_0129657, miR-194-5p, and glia maturation factor beta (GMFB). Cell viability was measured by Cell Counting Kit-8 (CCK-8) assay. 5-Ethynyl-2′-Deoxyuridine (EdU) assay was used to detect cell proliferation. Flow cytometry was used to detect cell apoptosis. Dual-luciferase reporter, RNA pull-down, and RNA immunoprecipitation (RIP) assays were used to assess the relationship between miR-194-5p and circ_0129657 or GMFB. Mouse middle cerebral artery occlusion (MCAO) model was applied to mimic the cerebral ischemia/reperfusion injury. Our data showed that the levels of circ_0129657 and GMFB were significantly increased and the expression of miR-194-5p was significantly decreased in oxygen-glucose deprivation (OGD)-induced human brain microvascular endothelial cells (HBMECs). Silencing circ_0129657 expression in OGD-induced HBMECs could promote cell viability and cell proliferation. Moreover, circ_0129657 depletion also could inhibit apoptosis and inflammatory factor secretion. Circ_0129657 functioned as a sponge for miR-194-5p and could regulate GMFB expression via miR-194-5p competition. Furthermore, miR-194-5p downregulation or GMFB restoration could partially reverse the effects of circ_0129657 silencing on cell biological properties in OGD-induced HBMECs. Meanwhile, circ_0129657 knockdown decreased cerebral infarction volume and neurological impairment in MCAO mouse models. In conclusion, our findings suggest that circ_0129657 can inhibit cell proliferation and promote apoptosis and inflammatory factor secretion in HBMECs after oxygen-glucose deprivation via miR-194-5p/GMFB axis, providing evidence that circ_0129657 has the potential as a useful biological molecular marker in the diagnosis of stroke.
Don't Wait Until 1998
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 1995

description: This booklet contains information to help you meet requirements for underground storage tank  systems (USTs) installed before December 22, 1988. We call these older tank systems "existing  USTs."  Federal rules and state law require you to make sure your existing USTs have the following by  December 22, 1998: Spill protection, Overfill protection and Corrosion protection. It helps you consider whether to upgrade or replace early,  explains the basic upgrade requirements, tells you how to protect against spills, overflows and corrosion, describes cathodic protection measures, and includes a quick compliance checklist.
Neoconorbina
Creators: name: Mamo, Briony L.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Chromista
Foraminifera
Globothalamea
Rotaliida
Rosalinidae
Neoconorbina

description: Neoconorbina sp. 1 (Fig. 19:17–21)
Remarks. These specimens were assigned to Neoconorbina due to their low concical trochospiral test that is circular in outline. The spiral side is convex and densely perforated with an imperforate keel and the umbilical side is flat. The sutures on the spiral test side are strongly curved and limabte with fine pustules. Sutures are depressed on the umbilical side with an open umbilicus and aperture beneath a plate-like folium (Fig. 19:17–21).
The material collected from the CG bears strong similarity to the specimens published by Debenay (2012) under Neoconorbina sp. 1 from New Caledonia, and they are likely conspecific. There is also some similarity with Neoconorbina terquemi (Rzehak 1888) published by Hayward et al. (1999) from the Kermadec Islands but CG specimens lack such an acute periphery, the umbilical side is flat rather than concave and the early subglobular chambers on the spiral side are more distinct.
Distribution within study area. Neoconorbina sp. 1 was collected from Heron, Wistari, One Tree and Sykes Reefs, but never with an abundance of more than five specimens per sample. One Tree Reef had the highest abundance (site 47, Lagoon 3) and Heron Lagoon the lowest. This species was also one of the few that was alive at the time of collection. Although only six live specimens were collected, they were all from either Wistari or One Tree Lagoons with no more than one live specimen per site.
description: Published as part of Mamo, Briony L., 2016, Benthic Foraminifera from the Capricorn Group, Great Barrier Reef, Australia, pp. 1-123 in Zootaxa 4215 (1) on pages 82-83, DOI: 10.11646/zootaxa.4215.1.1, http://zenodo.org/record/272923
Healthy Lawns & Clean Water: You Can Make a Difference
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection (NJDEP), Clean Water NJ
Year: 2008

description: This handout describes how to help protect New Jersey's waterways by selecting a low or no phosphorus fertilizer designed for lawns, and applying it properly.  It was produced as part of a partnership between NJDEP and two major fertilizer producers who agreed to reduce by 50% the amount of phosphorus in their lawn leaf fertilizer product, distribute this product in garden centers statewide, and work with the Department on strategies to educate the public on proper selection and use of lawn fertilizer.
Steginoporellidae Hincks 1884
Creators: name: Judith L Winston
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Bryozoa
Gymnolaemata
Cheilostomatida
Steginoporellidae

description: Family Steginoporellidae Hincks, 1884
description: Published as part of Judith L Winston, 2016, Bryozoa of Floridan Oculina reefs, pp. 1-81 in Zootaxa 4071 (1) on page 8, DOI: 10.11646/zootaxa.4071.1.1, http://zenodo.org/record/260490
Healthy Lawns and Health Environment Initiative
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection (NJDEP), Clean Water NJ
Year: 2008

description: This is a presentation about the Healthy Lawns and Healthy Environment Initiative, a partnership between New Jersey Department of Environmental Protection and two major fertilizer producers who agreed to reduce by 50% the amount of phosphorus in their lawn leaf fertilizer product, distribute this product in garden centers statewide, and work with the Department on strategies to educate the public on proper selection and use of lawn fertilizer. It presents information on the initiative, including figures relating to fertilizer use and lawn care in the USA and NJ.
Additional file 2: of Identification of a novel genetic locus underlying tremor and dystonia
Creators: name: Monies, Dorota
name: Al-Shaar, Hussam
name: Goljan, Ewa
name: Banan Al-Younes
name: Al-Breacan, Muna
name: Al-Saif, Maher
name: Wakil, Salma
name: Meyer, Brian
name: Khabar, Khalid
name: Bohlega, Saeed
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Variants in candidate interval. (PDF 217Â kb)
GADD45B predicts lung squamous cell carcinoma survival and impacts immune infiltration, and T cell exhaustion
Creators: name: Lv, Ying
name: Liu, Zeyu
name: Xiong, Kai
name: Duan, Hailing
name: Yang, Jiuyu
name: Liao, Pan
Publisher: name: Taylor & Francis
Year: 2023
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Hematology

description: Background: This study focussed on exploring the prognostic prediction performance of the growth arrest and DNA damage-inducible 45 beta (GADD45B) and its associations with T-cell activity and immune soakage in different malignancies, especially lung squamous cell carcinoma (LUSC). Methods: We applied TIMER database for comparing the expressions of GADD45B among different cancers. OncoLnc, Gene Expression Profiling Interactive Analysis 2 (GEPIA2), and Kaplan-Meier Plotter were utilised to evaluate the prognostic prediction performance of GADD45B. Besides, the associations of GADD45B with clinical stage, associated gene markers, and immune infiltration were examined through TISIDB, GEPIA2, and Tumour Immune Estimation Resource (TIMER). Biological processes (BPs) and KEGG enrichment analyses were performed to illustrate the possible role of GADD45B in LUSC. The miRWalk database was adopted to analyse the gene miRNA interaction network of GADD45B in LUSC. Results: GADD45B expression was decreased in most of the malignancies, with relation to the poor prognosis in LUSC. GADD45B also significantly affected the survival of LUSC subgroups divided by clinic data. GADD45B significantly correlates with and may stimulate T cell exhaustion in LUSC. Conclusions: GADD45B is a prognostic indicator in multiple tumours, especially in LUSC. Moreover, modulating GADD45B expression may improve immunotherapy efficacy in LUSC.
Notocotylus undefined-2
Creators: name: Shakarbaev, U. A.
name: Akramova, F. D.
name: Azimov, D. A.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Plagiorchiida
Notocotylidae
Notocotylus
Notocotylus undefined-2

description: Notocotylus sp. 2
Intermediate host: Theodoxus pallasi (Gastropoda: Neretidae).
Cercarian group: monostome.
Habitat: freshwater.
Definitive host group: birds.
Locality: Republic of Karakalpakstan.
Reference: Arystanov (1976).
description: Published as part of Shakarbaev, U. A., Akramova, F. D. & Azimov, D. A., 2020, The Taxonomic Survey Of The Cercarial Fauna (Platyhelminthes, Trematoda) In The Mollusks Of Uzbekistan, pp. 505-522 in Zoodiversity 54 (6) on page 515, DOI: 10.15407/zoo2020.06.505, http://zenodo.org/record/6377780
Memorandum of Understanding for UST Systems Owned by State, County, or Municipal Governments Out-of-Compliance with the December 22, 1998 Deadline
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 1999

description: This Memorandum of Understanding is being executed to allow the  Respondent(s), who are state, county or municipal governmental agencies in  the State of New Jersey, to upgrade their underground storage tank(s)  (USTs) as required by N.J.A.C. 7:14B-4.2(a). The Respondent(s) who  executes this document will not incur a penalty action from the Department  or the Office of the Attorney General for the duration of this Memorandum of  Understanding, provided the Respondent(s) complies with the provisions set  forth herein, and the UST owner or operator maintains an acceptable  method of release detection for the regulated USTs at the facility. The  protection from penalty action does not apply in the case of a knowing  discharge that may result in a serious threat to public health or the  environment.
Isorhynchophylline attenuates proliferation and migration of synovial fibroblasts via the FOXC1/β-catenin axis
Creators: name: Wu, Yingyi
name: Bian, Yan
name: Fei, Jing
name: Huang, Yang
Publisher: name: Taylor & Francis
Year: 2023
Subjects: subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Hematology

description: Rheumatoid arthritis (RA) is a common type of chronic inflammatory disease. Elucidating the mechanism of fibroblast-like synovial (FLS) as a pathologic factor in RA may address the urgent medical requirement for the treatment of RA. Isorhynchophylline (IRN) is a tetracyclic hydroxyindole alkaloid isolated from uncinaria, which has multiple biological activities and affects the progression of osteoarthritis. However, the role of IRN in rheumatoid arthritis remains unclear. Herein, our study aimed to elucidate the potential effect of IRN on RA and reveal its mechanism. Human FLS cell line MH7A cells were stimulated with TNF-α for 24 h to construct a cell model. CCK-8, Edu, wound healing, as well as transwell assays were conducted to detect the effects of IRN on cell proliferation and motility. ELISA and Immunoblot assays were further performed to detect the production of pro-inflammatory factors and the expression levels of MMPs. Immunoblot and Immunostaining assays were conducted to uncover the mechanism. ELISA, H&E staining, and Immunoblot assays were used to confirm the effects of IRN on RA in a CIA rat model. We revealed that IRN restrained TNF-α-stimulated MH7A cell proliferation and motility. In addition, IRN blocked the production of pro-inflammatory factors and MMPs in TNF-α-stimulated-MH7A cells. We further found that IRN restrained FOXC1/β-catenin axis, and improved MH7A cell proliferation as well as migration via the FOXC1/β-catenin axis. IRN restores CIA by inhibiting pro-inflammatory cytokines in synovial tissues. In summary, IRN attenuates proliferation and migration of FLS in RA via the FOXC1 mediated β-catenin axis.
Steginoporella Smitt 1873
Creators: name: Judith L Winston
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Bryozoa
Gymnolaemata
Cheilostomatida
Steginoporellidae
Steginoporella

description: Genus Steginoporella Smitt, 1873
description: Published as part of Judith L Winston, 2016, Bryozoa of Floridan Oculina reefs, pp. 1-81 in Zootaxa 4071 (1) on page 8, DOI: 10.11646/zootaxa.4071.1.1, http://zenodo.org/record/260490
Multiphase Extraction Techniques Power Point Presentation
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 1998

description: Multiphase Extraction consists of   high vacuum processes which remove vapors and total fluids, both dissolved and residual phase product, from the subsurface. Vapor is treated with combustion engine and water/product is disposed of off-site.  It is usually short term (6-8 hours) and temporary (once a month).  These presentation materials describe multiphase extraction, its effective uses, appropriate site conditions, monitoring the effectiveness of the remediation, the use of surfactants, case examples, and cost effectiveness
Additional file 3: of Identification of a novel genetic locus underlying tremor and dystonia
Creators: name: Monies, Dorota
name: Al-Shaar, Hussam Abou
name: Goljan, Ewa
name: Banan Al-Younes
name: Al-Breacan, Muna
name: Al-Saif, Maher
name: Wakil, Salma
name: Meyer, Brian
name: Khabar, Khalid
name: Bohlega, Saeed
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Expression of CAMTA2 isoforms, 1, 3, 4, 7 and 10 in sub-regions of the brain. (PDF 594Â kb)
Tank Care: A Guide to the Operation and Maintenance of Your Underground Storage Tank System
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 2001

description: The law and regulations contain specific requirements for proper operation and maintenance of   underground storage tanks (USTs), as well as record keeping requirements. These requirements are designed to maximize the  operational life of UST systems and insure their safe operation. This booklet is written for the tank owner and operator who has installed or upgraded a tank  system in compliance with the law. It describes the requirements for proper operation and  maintenance of your underground storage tank systems and the record keeping requirements  as well. It also contains worksheets and checklists to assist you in performing these tasks.
Steginoporella magnilabris Busk 1854
Creators: name: Judith L Winston
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Bryozoa
Gymnolaemata
Cheilostomatida
Steginoporellidae
Steginoporella
Steginoporella magnilabris

description: Steginoporella magnilabris (Busk, 1854)
(Fig. 2; Table 1)
Membranipora magnilabris Busk, 1852: vi, pl. 65, fig. 4; 1854: 62 (part), 113.
Steginoporella elegans: Smitt, 1873: 15, pl. 4, figs 96–101; Verrill 1900: 594.
Steganoporella magnilabris: Harmer 1900: 279, figs 10, 31; Osburn 1914: 196; 1940: 375; 1947: 18; Canu & Bassler 1923: 63, pl. 14, figs 12, 13; 1928a: 64, pl. 7, figs 8–10, pl. 32, fig. 6; Marcus 1955: 284, pl. 2, fig. 25; Cook 1964: 53, pl. 1, fig. 4, fig. 2; 1968: 153; 1985: 108, pl. 12 D; Long & Rucker 1970: 19, figs 2, 6; Powell 1971: 769.
Steginoporella magnilabris: Shier 1964: 618; Pouyet & David 1979: 784, text-fig. 2, pl. 1, figs 6–7; Winston 1984: 10, fig. 18; 2005: 29, figs 73, 75; Souza 1989: 497; Vieira et al. 2008: 20; Winston & Woollacott 2009: 252, fig. 11.
Material examined. VMNH no. 70599.
Description. Colony encrusting to foliaceous; fragment found in this study was part of erect colony that had changed growth direction (Fig. 2 A, C). Zooids typically dimorphic, all elongate, subrectangular proximally and rounded distally, but comprising only the smaller A-zooids in sole fragment found (the less-abundant larger Bzooids known to occur between them in other material). A-zooid orifice semicircular with smoothly calcified distal rim and shelf, and two condyles. B-zooid morphology similar, but opercular region enlarged, with deeper, lunate shelf. Sunken cryptocystal shelf in proximal half of all zooids, less granular than rim and with a few small pores, forming projection that covers polypide tube; with elongate opesiular grooves on either side to allow insertion of retractor muscles. Oculina specimen shown here was skeletal, but when alive both A and B zooids had strongly reinforced opercula edged with acute chitinous teeth. No avicularia. Brooding internal.
Remarks. On the basis of their unique reproductive and morphological characters, Ostrovsky (2013) created a new suborder and new superfamily Thalamoporelloidea to include the families Thalamoporellidae and Steginoporellidae. His revised classification is followed here.
Distribution. Western Atlantic: Florida, Gulf of Mexico and Caribbean. Brazil: Abrolhos Island, Bahia, Espírito Santo and Rio de Janeiro; reported to have a broader subtropical-tropical distribution (Harmer 1900).
description: Published as part of Judith L Winston, 2016, Bryozoa of Floridan Oculina reefs, pp. 1-81 in Zootaxa 4071 (1) on pages 8-10, DOI: 10.11646/zootaxa.4071.1.1, http://zenodo.org/record/260490
Technical Manual for Special Water Resource Protection Area, Functional Value Analysis, January 2, 2007 - Revised January 24, 2008
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection, Division of Watershed Management
Year: 2008

description: The Stormwater Management Rules establish a 300-foot Special Water Resource Protection Area (SWRPA) adjacent to all Category One waters and their mapped tributaries within the same HUC 14 watershed. Pursuant to N.J.A.C. 7:8-5.5(h)1ii, encroachment into the SWRPA is only allowed under limited circumstances where the applicant has demonstrated that the functional value and overall condition of the SWRPA are maintained to the maximum extent practicable. The New Jersey Deparment of Environmental Protection has developed this technical manual to assist the regulated community in analyzing whether the functional value and overall condition of the SWRPA are maintained.  The document also includes Administrative Order No. 2008-02 and the public notice for the the release of this revised technical manual.
Alexandrella undetermined 1
Creators: name: d'Acoz, Cédric d'Udekem
name: Verheye, Marie L.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Amphipoda
Stilipedidae
Alexandrella

description: Alexandrella sp. 1
Figs 338–339
Bathypanoploea schellenbergi Holman & Watling, 1983: 47, in part (not holotype), fig. 9b, 10,? 11f.
Bathypanoploea schellenbergi –? Rauschert & Arntz 2015: 79, pl. 72 [ANT-XXI].
Material examined
RV l’Astrolabe cruises:
SOUTHERN OCEAN: 1 very large spec., cruise REVOLTA III, no station (Dumont d’Urville Sea), Collect_ID: REVO_449, Adélie Coast, 66°38ʹ S, 140°42ʹ E to 66°38ʹ S, 140°40ʹ E, 718–729 m, mud, beam trawl, 20 Jan. 2012, CE-000002100 (MNHN-IU- 2009-2540).
Remarks
The specimen examined has a mid-dorsal tooth on pereionite 6 in addition to the usual teeth on pereionite 7 and pleonites 1–3. Otherwise, it looks very similar to Alexandrella pulchra. Only minor differences in the form of coxae 1 and 4 were observed. The shape of the eye is similar to that of A. pulchra, but the body and leg pigmentation is less pronounced. A small tooth is also present in the specimen from the continental shelf of the Ross Sea illustrated by Holman & Watling (1983) and a specimen from the eastern Weddell Sea illustrated by Rauschert & Arntz (2015). The latter specimen has much smaller eyes than A. pulchra, and according to an early draft of Rauschert & Arntz’s book, it was collected during the cruise ANT-XXI (obviously ANT-XXI/2), which almost exclusively sampled on the continental shelf.
description: Published as part of d'Acoz, Cédric d'Udekem & Verheye, Marie L., 2017, Epimeria of the Southern Ocean with notes on their relatives (Crustacea, Amphipoda, Eusiroidea), pp. 1-553 in European Journal of Taxonomy 359 on page 176, DOI: 10.5852/ejt.2017.359, http://zenodo.org/record/3855694
Neoconorbina
Creators: name: Mamo, Briony L.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Chromista
Foraminifera
Globothalamea
Rotaliida
Rosalinidae
Neoconorbina

description: Neoconorbina? sp. 1 (Fig. 20:1–3)
Remarks. Collected specimens are tentatively assigned to Neoconorbina due to the trochospiral chamber arrangement and low, conical and convex test. The spiral side sutures are depressed and the chambers are inflated, large and covered by both fine and coarse perforations. The fine perforations predominantly occur around the outermost chambers whilst the coarse perforations are much less abundant and trace lines across all the spiral side chambers (Fig. 20:1–3). The limited number of available material are invariably juvenile specimens that are attached to reef rubble on the umbilical side making a specific taxonomic assignment tentative at best.
Distribution within study area. Neoconorbina? sp. 1 was collected on Heron Reef flat along Transects 1 and 2. All collected specimens were alive at the time of sampling.
description: Published as part of Mamo, Briony L., 2016, Benthic Foraminifera from the Capricorn Group, Great Barrier Reef, Australia, pp. 1-123 in Zootaxa 4215 (1) on page 83, DOI: 10.11646/zootaxa.4215.1.1, http://zenodo.org/record/272923
Highway Agency Stormwater Guidance Document
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection (NJDEP), Division of Water Quality, Municipal Stormwater Regulation Program
Year: 2004

description: The Municipal Stormwater Regulation Program addresses pollutants entering our waters from certain storm drainage systems owned or operated by local, county, state, interstate, or federal government agencies. The purpose of this Guidance Document is to assist the Highway Agency in understanding what is required under the Phase II Municipal Stormwater Regulation Program, and how to comply with the Highway Permit. The Guidance Document includes various chapters, many of which are solely dedicated to discussing specific permit requirements. These permit requirements are either Statewide Basic Requirements (SBRs) or related Best Management Practices (BMPs). Each specific permit requirement, whether it be a SBR or BMP, is broken down into three section headings: "What is required?," "What does this mean?" and "Want to know more?"
Buliminoides Cushman 1911
Creators: name: Mamo, Briony L.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Chromista
Foraminifera
Globothalamea
Rotaliida
Buliminoididae
Buliminoides

description: Buliminoides Cushman 1911
Buliminoides williamsoniana (Brady 1881) (Fig. 20:4, 5)
Description. See Brady (1881, p. 56).
Distribution within study area. Buliminoides williamoniana (Brady 1881) was only collected from One Tree and Wistari Reefs with an abundance of one to three specimens per site. The greatest abundance was recorded at site 20 in One Tree Lagoon 3.
description: Published as part of Mamo, Briony L., 2016, Benthic Foraminifera from the Capricorn Group, Great Barrier Reef, Australia, pp. 1-123 in Zootaxa 4215 (1) on page 83, DOI: 10.11646/zootaxa.4215.1.1, http://zenodo.org/record/272923
Gorgodera pagenstecheri
Creators: name: Shakarbaev, U. A.
name: Akramova, F. D.
name: Azimov, D. A.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Plagiorchiida
Gorgoderidae
Gorgodera
Gorgodera pagenstecheri

description: Gorgodera pagenstecheri (Ssinitzin, 1905)
Intermediate host: Sphaerium corneum, Pisidium abtusale (Bivalvia: Pisidiidae).
Cercarian group: amphistome.
Habitat: freshwater.
Definitive host group: amphibians.
Locality: Fergana Valley.
Reference: Tukhmanyants, Shakhurina (1971).
description: Published as part of Shakarbaev, U. A., Akramova, F. D. & Azimov, D. A., 2020, The Taxonomic Survey Of The Cercarial Fauna (Platyhelminthes, Trematoda) In The Mollusks Of Uzbekistan, pp. 505-522 in Zoodiversity 54 (6) on page 515, DOI: 10.15407/zoo2020.06.505, http://zenodo.org/record/6377780
Public Complex Stormwater Guidance Document
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection (NJDEP), Division of Water Quality, Municipal Stormwater Regulation Program
Year: 2004

description: The Municipal Stormwater Regulation Program addresses pollutants entering our waters from certain storm drainage systems owned or operated by local, county, state, interstate, or federal government agencies. The purpose of this Guidance Document is to assist Public Complexes in understanding what is required under the Phase II Municipal Stormwater Regulation Program, and how to comply with the Public Complex Permit. The Guidance Document includes various chapters, many of which are solely dedicated to discussing specific permit requirements. These permit requirements are either Statewide Basic Requirements (SBRs) or related Best Management Practices (BMPs). Each specific permit requirement, whether it be a SBR or BMP, is broken down into three section headings: "What is required?," "What does this mean?" and "Want to know more?"
MiR-526b-3p enhances sensitivity of head and neck squamous cell carcinoma cells to radiotherapy via suppressing exosomal LAMP3-mediated autophagy
Creators: name: Lu, Huixiang
name: Zhou, Junnian
name: Li, Xiaojun
name: Han, Xiaoqin
name: Ma, Shuping
name: Feng, Chunlan
Publisher: name: Taylor & Francis
Year: 2023
Subjects: subject: Biophysics
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Lysosomal associated membrane protein 3 (LAMP3) has been reported to be a tumour promoter in multiple cancer types by modulating tumour cell autophagy. However, the potential mechanism of LAMP3 in radio-resistance of head and neck squamous cell carcinoma (HNSCC) remains unknown. Therefore, our current study aims to detect the impacts of LAMP3 on the resistance of HNSCC cells to radiotherapy and meanwhile explore its functional mechanism. Through RT-Qpcr examination, LAMP3 expression was identified to be expressed at a significantly high level in irradiation-resistant HNSCC cell lines compared with irradiation-sensitive HNSCC cell lines. Functional assays including CCK-8, colony formation and Transwell assays demonstrated that LAMP3 enhanced the radio-resistance through inducing autophagy to promote HNSCC cell growth. Furthermore, irradiation-resistant HNSCC cells could transfer exosomal LAMP3 to elevate LAMP3 expression in irradiation-sensitive HNSCC cells. Mechanistically, microRNA (miRNA) miR-526b-3p could inhibit LAMP3 expression so as to strengthen sensitivity of HNSCC cells to radiotherapy. In a word, exosomal LAMP3 expression promoted radioresistance of HNSCC cells via inducing autophagy, while this effect could be suppressed by miR-526b-3p in a targeted manner.
Alexandrella undetermined 2
Creators: name: d'Acoz, Cédric d'Udekem
name: Verheye, Marie L.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Amphipoda
Stilipedidae
Alexandrella

description: Alexandrella sp. 2
Fig 339
Distribution
RV Polarstern, PS77, ANT-XXVII/3, stn 211 (there were several sub-stations for stn 211), Shag Rocks. The species is known from a photograph taken by H. Robert and Ch. Havermans. The specimen was unavailable for study.
Remark
This species looks similar to A. pulchra and A. schellenbergi but displays some differences. Pereionites 5 and 6 have each a conspicuous posterodorsal tooth, which is absent in A. pulchra and A. schellenbergi. The pereiopods are striped, which is not the case or not so pronounced in A. pulchra.
description: Published as part of d'Acoz, Cédric d'Udekem & Verheye, Marie L., 2017, Epimeria of the Southern Ocean with notes on their relatives (Crustacea, Amphipoda, Eusiroidea), pp. 1-553 in European Journal of Taxonomy 359 on page 177, DOI: 10.5852/ejt.2017.359, http://zenodo.org/record/3855694
Additional file 3: of Identification of a novel genetic locus underlying tremor and dystonia
Creators: name: Monies, Dorota
name: Al-Shaar, Hussam
name: Goljan, Ewa
name: Banan Al-Younes
name: Al-Breacan, Muna
name: Al-Saif, Maher
name: Wakil, Salma
name: Meyer, Brian
name: Khabar, Khalid
name: Bohlega, Saeed
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Expression of CAMTA2 isoforms, 1, 3, 4, 7 and 10 in sub-regions of the brain. (PDF 594Â kb)
Low-Flow Purging and Sampling Guidance
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 2003

description: The procedures in this guidance document are specific to Low-Flow Purging and Sampling (LFPS) of monitor wells in New Jersey. The purpose of Low-Flow Purging and Sampling (LFPS) is to collect groundwater samples from  monitor wells that are representative of ambient groundwater conditions in the aquifer. This is  accomplished by setting the intake velocity of the sampling pump to a flow rate that limits drawdown  inside the well. LFPS has three primary benefits. First, it minimizes disturbance of sediment in the  bottom of the well, thereby producing a sample with low turbidity. Second, LFPS minimizes aeration  of the groundwater during sample collection. Third, the amount of groundwater purged from a well is  usually reduced as compared to conventional groundwater purging and sampling methods.
Industrial Site Recovery Act (ISRA) Rules, N.J.A.C. 7:26B
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 2007

description: This chapter constitutes the rules governing the implementation of the Industrial Site  Recovery Act, P.L. 1993 c.139 (N.J.S.A. 13:1K-6 et seq.).  The rules include scope and authority, definitions, certifications, rules for department review, right of entry and inspection, liability, civil penalties for non-compliance, applicability, remediation procedures, and fee schedules.
Dicrocoelium dendriticum
Creators: name: Shakarbaev, U. A.
name: Akramova, F. D.
name: Azimov, D. A.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Plagiorchiida
Dicrocoeliidae
Dicrocoelium
Dicrocoelium dendriticum

description: Dicrocoelium dendriticum (Rudolphi, 1819)
Intermediate host: Leucozonella rufispira, Xeropicta candaharica, Bradybaena phaezona, Ponsadenia semenovi, Subzebrinus labieleus, Pseudonapaeus sogdianus (Gastropoda: Hygromiidae, Bradybaenidae, Buliminidae).
Cercarian group: microcercous.
Habitat: terrestrial.
Definitive host group: mammals.
Localities: eastern, northeastern, central and southern regions of Uzbekistan.
References: Salimov (1965, 1974, 1989, 1991), Ernazarov (1972), Tukhmanyants, Shakhurina (1971), Sultanov et al. (1975), Shakarboyev et al. (2012).
description: Published as part of Shakarbaev, U. A., Akramova, F. D. & Azimov, D. A., 2020, The Taxonomic Survey Of The Cercarial Fauna (Platyhelminthes, Trematoda) In The Mollusks Of Uzbekistan, pp. 505-522 in Zoodiversity 54 (6) on page 515, DOI: 10.15407/zoo2020.06.505, http://zenodo.org/record/6377780
Belluloporidae Ostrovsky 2013
Creators: name: Judith L Winston
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Bryozoa
Gymnolaemata
Cheilostomatida
Belluloporidae

description: Family Belluloporidae Ostrovsky, 2013
description: Published as part of Judith L Winston, 2016, Bryozoa of Floridan Oculina reefs, pp. 1-81 in Zootaxa 4071 (1) on page 11, DOI: 10.11646/zootaxa.4071.1.1, http://zenodo.org/record/260490
Natural isoaspartyl protein modification of ZAP70 alters T cell responses in lupus
Creators: name: Yang, Mei-Ling
name: Lam, TuKiet T.
name: Kanyo, Jean
name: Kang, Insoo
name: Zhou, Zhaohui Sunny
name: Clarke, Steven G.
name: Mamula, Mark J.
Publisher: name: Taylor & Francis
Year: 2023
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Protein posttranslational modifications (PTMs) arise in a number of normal cellular biological pathways and in response to pathology caused by inflammation and/or infection. Indeed, a number of PTMs have been identified and linked to specific autoimmune responses and metabolic pathways. One particular PTM, termed isoaspartyl (isoAsp or isoD) modification, is among the most common spontaneous PTM occurring at physiological pH and temperature. Herein, we demonstrate that isoAsp modifications arise within the ZAP70 protein tyrosine kinase upon T-cell antigen receptor (TCR) engagement. The enzyme protein L-isoaspartate O-methyltransferase (PCMT1, or PIMT, EC 2.1.1.77) evolved to repair isoaspartyl modifications in cells. In this regard, we observe that increased levels of isoAsp modification that arise under oxidative stress are correlated with reduced PIMT activity in patients with systemic lupus erythematosus (SLE). PIMT deficiency leads to T cell hyper-proliferation and hyper-phosphorylation through ZAP70 signaling. We demonstrate that inducing the overexpression of PIMT can correct the hyper-responsive phenotype in lupus T cells. Our studies reveal a phenotypic role of isoAsp modification and phosphorylation of ZAP70 in lupus T cell autoimmunity and provide a potential therapeutic target through the repair of isoAsp modification.
Processing of Damage Claims Pursuant to the Sanitary Landfill  Facility Closure and Contingency Fund Act, N.J.A.C. 7:1I
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 2004

description: The purpose of the SLF Fund is to provide compensation for damages resulting from the improper operation or closure of sanitary landfills facilities. The fund is "strictly liable for all direct and indirect damages, no matter by whom sustained, proximately resulting from the operations or closure of any sanitary landfill." (See, N.J.S.A. 13:1E-106a.) This chapter constitutes the rules of the Department concerning the processing of all claims under the  Sanitary Landfill Facility Closure and Contingency Fund Act. This chapter is promulgated for the following purposes:  1. To implement the purposes and objectives of the Sanitary Landfill Facility Closure and  Contingency Fund Act, N.J.S.A. 13:1E-100 et seq.;  2. To establish rules for administration of the Sanitary Landfill Facility Contingency Fund,  established pursuant to the Act, for the purpose of providing prompt and adequate compensation for  damages as defined herein; and  3. To protect and insure that the taxes credited to the Fund are spent in a proper manner and for the  intended purposes.
Processing of Damage Claims Pursuant to the  Spill Compensation and Control Act, N.J.A.C. 7:1J
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 2004

description: This chapter constitutes the rules of the Department concerning the processing of all claims under the Spill Compensation and Control Act for damages resulting from the discharge of a hazardous substance or a threatened discharge of a hazardous substance. The rules include scope and authority, definitions, certifications, rules for general claims submissions, rules for water supply systems claims, rules for property value diminution claims, emergency response claims by local units, and procedures for filing claims.
Ground Water Quality Standards, N. J. A. C. 7:9B, Last Amended June 2008
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection
Year: 2008

description: This chapter provides the basis for protection of ambient ground water quality, through the  establishment of constituent standards for ground water pollutants. These constituent  standards are applicable to the development of: ground water protection standards pursuant to  the New Jersey Pollutant Discharge Elimination System (NJPDES; N.J.A.C. 7:14A); ground  water remediation standards; and other requirements and regulatory actions applicable to  discharges that cause or may cause pollutants to enter the ground waters of the State,  including non-point and diffuse sources regulated by the Department. This chapter constitutes the Department's primary basis for setting numerical criteria for  limits on discharges to ground water and standards for ground water remediation.
Belluloporina Ostrovsky 2013
Creators: name: Judith L Winston
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Bryozoa
Gymnolaemata
Cheilostomatida

description: Suborder Belluloporina Ostrovsky, 2013
description: Published as part of Judith L Winston, 2016, Bryozoa of Floridan Oculina reefs, pp. 1-81 in Zootaxa 4071 (1) on page 11, DOI: 10.11646/zootaxa.4071.1.1, http://zenodo.org/record/260490
Corrigia corrigia corrigia (Braun 1901
Creators: name: Shakarbaev, U. A.
name: Akramova, F. D.
name: Azimov, D. A.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Plagiorchiida
Dicrocoeliidae
Corrigia
Corrigia corrigia

description: Corrigia corrigia (Braun, 1901)
Intermediate host: Candaharia rutellum, Bradybaena phaezona (Gastropoda: Parmacellidae, Bradybaenidae).
Cercarian group: cercariaeum.
Habitat: terrestrial.
Definitive host group: birds.
Locality: southern regions.
Reference: Davronov (1999).
description: Published as part of Shakarbaev, U. A., Akramova, F. D. & Azimov, D. A., 2020, The Taxonomic Survey Of The Cercarial Fauna (Platyhelminthes, Trematoda) In The Mollusks Of Uzbekistan, pp. 505-522 in Zoodiversity 54 (6) on page 515, DOI: 10.15407/zoo2020.06.505, http://zenodo.org/record/6377780
High-throughput autoantibody profiling of different stages of Schistosomiasis japonica
Creators: name: Zhou, Xiaorong
name: Wang, Xi
name: Xu, Jing
name: Tang, Qi
name: Bergquist, Robert
name: Shi, Leming
name: Qin, Zhiqiang
Publisher: name: Taylor & Francis
Year: 2023
Subjects: subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Infection by the Schistosoma japonicum can result in acute, chronic and late-stage manifestations. The latter often presents with severe organ failures and premature death. Importantly, infection can also produce autoimmune phenomena reflected by the development of autoantibodies. We wished to explore and profile the presence of autoantibodies in sera of patients with different stages of S. japonicum infection with the added aim of providing a reference assisting diagnosis. Blood samples from 55 patients with chronic and 20 patients with late-stage schistosomiasis japonica together, with a control group of 50 healthy people were randomly investigated against a microarray of 121 different autoantigens. In addition, the frequency of antibodies against Schistosoma egg antigen (SEA) was examined. In the sera from patients with chronic schistosomiasis japonica, 14 different highly expressed autoantibodies were detected, while patients with late-stage schistosomiasis were found to express as many as 43 autoantibody specificities together with a significantly higher frequency of antibodies against SEA compared to the control group. The findings presented suggest that autoantibody-based classification of schistosomiasis japonica represents a promising approach for the elucidation of subtypes of the disease. This approach may reflect differential disease mechanisms, which could ultimately lead to better treatment.