cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 3: of Liver cancer cell lines distinctly mimic the metabolic gene expression pattern of the corresponding human tumours
Creators: name: Zeribe Nwosu
name: Battello, Nadia
name: Rothley, Melanie
name: PioroĹSka, Weronika
name: Sitek, Barbara
name: Ebert, Matthias
name: Hofmann, Ute
name: Sleeman, Jonathan
name: WĂślfl, Stefan
name: Meyer, Christoph
name: Megger, Dominik
name: Dooley, Steven
Publisher: name: figshare
Year: 2018
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: Table S2. HCC-associated genes. Contains a set of genes often associated with HCC, including those related to epithelialâ mesenchymal transition. (DOCX 19 kb)
Chrysomela occidentalis Linnaeus, 1758, spec. nov.
Creators: name: Linnaeus, Carolus
Publisher: name: Laurentius Salvius
Year: 1758
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Chrysomela
Chrysomela occidentalis

description: Chrysomela occidentalis [spec. nov.]
C. ovata viridi-aenea, pedibus antennisque flavis.
Habitat in America. Rolander.
Similis C. vitellinae.
description: Published as part of Linnaeus, Carolus, 1758, Systema Naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Stockholm :Laurentius Salvius on page 369, DOI: 10.5962/bhl.title.542, http://zenodo.org/record/3922206
Period preserving nonisospectral flows and the moduli space of periodic solutions of soliton equations
Creators: name: Grinevich, P. G.
name: Schmidt, M. U.
Publisher: name: arXiv
Year: 1994
Subjects: subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Flows on the moduli space of the algebraic Riemann surfaces, preserving the periods of the corresponding solutions of the soliton equations are studied. We show that these flows are gradient with respect to some indefinite symmetric flat metric arising in the Hamiltonian theory of the Whitham equations. The functions generating these flows are conserved quantities for all the equations simultaneously. We show that for 1+1 systems these flows can be imbedded in a larger system of ordinary nonlinear differential equations with a rational right-hand side. Finally these flows are used to give a complete description of the moduli space of algebraic Riemann surfaces corresponding to periodic solutions of the nonlinear Schrödinger equation.
description: 35 pages, LaTex. Macros file elsart.sty is used (it was submitted by the authors to solv-int@xyz.lanl.gov library macroses),e-mail: pgg@landau.ac.ru, e-mail:mschmidt@omega.physik.fu-berlin.de
Semiclassical wave equation and exactness of the WKB method
Creators: name: Sergeenko, M. N.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Quantum Physics (quant-ph)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: The exactness of the semiclassical method for three-dimensional problems in quantum mechanics is analyzed. The wave equation appropriate in the quasiclassical region is derived. It is shown that application of the standard leading-order WKB quantization condition to this equation reproduces exact energy eigenvalues for all solvable spherically symmetric potentials.
description: 13 pages
Chrysomela padi Linnaeus, 1758, spec. nov.
Creators: name: Linnaeus, Carolus
Publisher: name: Laurentius Salvius
Year: 1758
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Chrysomela
Chrysomela padi

description: Chrysomela padi [spec. nov.]
C. ovata nigra, elytris apice lividis.
Habitat in Pruno Pado.
Pulice major, tota nigra, elytris apice lividis.
description: Published as part of Linnaeus, Carolus, 1758, Systema Naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Stockholm :Laurentius Salvius on page 369, DOI: 10.5962/bhl.title.542, http://zenodo.org/record/3922206
Singular behaviour of time-averaged stress fluctuations on surfaces
Creators: name: Itami, Masato
name: Sasa, Shin-ichi
Publisher: name: arXiv
Year: 2018
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We provide a method for calculating time-averaged stress fluctuations on surfaces in a viscous incompressible fluid at equilibrium. We assume that (i) the time-averaged fluctuating stress is balanced in equilibrium at each position and that (ii) the time-averaged fluctuating stress obeys a Gaussian distribution on the restricted configuration space given by (i). Using these assumptions with the Green-Kubo formula for the viscosity, we can derive the large deviation function of the time-averaged fluctuating stress. Then, using the saddle-point method for the large deviation function, we obtain the time-averaged surface stress fluctuations. As an example, for a fluid between two parallel plates, we study the time-averaged shear/normal stress fluctuations per unit area on the top plate at equilibrium. We show that the surface shear/normal stress fluctuations are inversely proportional to the distance between the plates.
description: 9 pages
title: ADCO, Ordre cistercien : comptes (1499-1515) (11 H 1162), f. 00042
Creators: name: de la Côte-d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Petot, Frédéric
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2019
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: comptes
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Ordre cistercien : comptes (1499-1515), Archives départementales de la Côte-d'Or, (11 H 1162). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Ordre cistercien : comptes (1499-1515), Archives départementales de la Côte-d'Or, (11 H 1162), f. 00042, in Projet CBMA - Corpus Burgundiae Medii Aevi \[Ressource en ligne\], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Integrable systems and Riemann surfaces of infinite genus
Creators: name: Schmidt, Martin U.
Publisher: name: arXiv
Year: 1994
Subjects: subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: To the spectral curves of smooth periodic solutions of the $n$-wave equation the points with infinite energy are added. The resulting spaces are considered as generalized Riemann surfcae. In general the genus is equal to infinity, nethertheless these Riemann surfaces are similar to compact Riemann surfaces. After proving a Riemann Roch Theorem we can carry over most of the constructions of the finite gap potentials to all smooth periodic potentials. The symplectic form turns out to be closely related to Serre duality. Finally we prove that all non-linear PDE's, which belong to the focussing case of the non-linear Schrödinger equation, have global solutions for arbitrary smooth periodic inital potantials.
description: 91 page, LaTeX, no pictures
Chrysomela armoraciae Linnaeus, 1758, spec. nov.
Creators: name: Linnaeus, Carolus
Publisher: name: Laurentius Salvius
Year: 1758
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Chrysomela
Chrysomela armoraciae

description: Chrysomela armoraciae [spec. nov.]
C. ovata coeruleo-viridis, subtus nigra.
Habitat in Cochlearia Armoracia.
Chrysomelae Larvae consumunt folia, relictis saepe eorum vasis, pulpa contentae,
description: Published as part of Linnaeus, Carolus, 1758, Systema Naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Stockholm :Laurentius Salvius on page 369, DOI: 10.5962/bhl.title.542, http://zenodo.org/record/3922206
The stochastic limit of quantum spin systems
Creators: name: Accardi, L.
name: Kozyrev, S. V.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The stochastic limit for the system of spins interacting with a boson field is investigated. In the finite volume an application of the stochastic golden rule shows that in the limit the dynamics of a quantum system is described by a quantum white noise equation that after taking of normal order is equivalent to quantum stochastic differential equation (QSDE). For the quantum Langevin equation the dynamics is well defined and is a quantum flow on the infinite lattice system.
description: 11 pages, LaTeX 2.09
A highly potent and selective inhibitor Roxyl-WL targeting IDO1 promotes immune response against melanoma
Creators: name: Xu, Guangwei
name: Wang, Tianqi
name: Li, Yongtao
name: Huang, Zhi
name: Wang, Xin
name: Zheng, Jianyu
name: Yang, Shengyong
name: Fan, Yan
name: Xiang, Rong
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: Indoleamine 2,3-dioxygenase 1 (IDO1) activity links to immune escape of cancers. Inhibition of IDO1 provides a new approach for cancer treatment. Most clinical IDO1 drugs show marginal efficacy as single agents. On basis of molecular docking and pharmacophore modelling, a novel inhibitor Roxyl-WL was discovered with a half maximal inhibitory concentration (IC50) value of 1 nM against IDO1 and 10–100-fold increased potent activity compared with IDO1 drugs in clinical trials. Roxyl-WL displayed excellent kinase spectrum selectivity with no activity out of the 337 protein kinases. In vitro, Roxyl-WL effectively augmented the proliferation of T cells and reduced the number of regulatory T cell (Tregs).When administered to melanoma (B16F10) tumor-bearing mice orally, Roxyl-WL significantly suppressed tumor growth and induced immune response.
Phenological piecewise modelling is more conducive than whole-season modelling to winter wheat yield estimation based on remote sensing data
Creators: name: Huang, Xin
name: Zhu, Wenquan
name: Zhao, Cenliang
name: Xie, Zhiying
name: Zhang, Hui
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Plant Biology

description: Most of the existing remote sensing-based yield estimation methods adopt the mean or cumulative value of meteorological factors within the whole growing season, which may ignore the impact of adverse meteorological conditions on the growth of winter wheat in a certain phenological period. In this study, we distinguished the developmental progression of winter wheat as three phenological periods. In each phenological period, the vegetation indices and meteorological factors were optimized. Then the accuracy and spatiotemporal transferability of the phenological piecewise modelling was compared with that of the whole-season modelling based on four regression methods (i.e. multiple linear regression, artificial neural network, support vector regression and random forest). The results showed that the optimal combinations of variables for the whole-season modelling and the phenological piecewise modelling were different. Compared with the whole-season models, the R2 for the phenological piecewise models improved by 1.4% to 7.6%, the root mean square error (RMSE) decreased by 1.1% to 8.2% among four regression methods . In addition, compared with the whole-season models, the spatiotemporal transferability for the phenological piecewise models was generally better. The accuracies after spatiotemporal transfer for the phenological piecewise models were still higher than that for the whole-season models.
Bilinear Discrete Painleve-II and its Particular Solutions
Creators: name: Satsuma, J.
name: Kajiwara, K.
name: Grammaticos, B.
name: Hietarinta, J.
name: Ramani, A.
Publisher: name: arXiv
Year: 1994
Subjects: subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: FOS: Physical sciences

description: By analogy to the continuous Painlevé II equation, we present particular solutions of the discrete Painlevé II (d-P$\rm_{II}$) equation. These solutions are of rational and special function (Airy) type. Our analysis is based on the bilinear formalism that allows us to obtain the $τ$ function for d-P$\rm_{II}$. Two different forms of bilinear d-P$\rm_{II}$ are obtained and we show that they can be related by a simple gauge transformation.
description: 9 pages in plain TeX
Chrysomela hypochaeridis Linnaeus, 1758, spec. nov.
Creators: name: Linnaeus, Carolus
Publisher: name: Laurentius Salvius
Year: 1758
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Chrysomela
Chrysomela hypochaeridis

description: Chrysomela hypochaeridis [spec. nov.]
C. ovata aurata, antennis nigris, elytris abbreviatis. It. scan. 210.
Habitat in Hypochaeridis maculatae floribus.
description: Published as part of Linnaeus, Carolus, 1758, Systema Naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Stockholm :Laurentius Salvius on page 370, DOI: 10.5962/bhl.title.542, http://zenodo.org/record/3922206
Chrysomela vulgatissima Linnaeus, 1758, spec. nov.
Creators: name: Linnaeus, Carolus
Publisher: name: Laurentius Salvius
Year: 1758
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Chrysomela
Chrysomela vulgatissima

description: Chrysomela vulgatissima [spec. nov.]
C. oblongo-ovata caerulea, antennis basi ferrugineis.
Habitat in Europa.
Differt a sequenti quod major, non aenea, sed caerulea & magis oblonga.
description: Published as part of Linnaeus, Carolus, 1758, Systema Naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Stockholm :Laurentius Salvius on page 370, DOI: 10.5962/bhl.title.542, http://zenodo.org/record/3922206
Defect-Mediated Stability: An Effective Hydrodynamic Theory of Spatio-Temporal Chaos
Creators: name: Chow, Carson C.
name: Hwa, Terence
Publisher: name: arXiv
Year: 1994
Subjects: subject: Condensed Matter (cond-mat)
subject: Chaotic Dynamics (nlin.CD)
subject: FOS: Physical sciences

description: Spatiotemporal chaos (STC) exhibited by the Kuramoto-Sivashinsky (KS) equation is investigated analytically and numerically. An effective stochastic equation belonging to the KPZ universality class is constructed by incorporating the chaotic dynamics of the small KS system in a coarse-graining procedure. The bare parameters of the effective theory are computed approximately. Stability of the system is shown to be mediated by space-time defects that are accompanied by stochasticity. The method of analysis and the mechanism of stability may be relevant to a class of STC problems.
description: 34 pages + 9 figures
Nonautonomous Dynamics of Acute Cell Injury
Creators: name: DeGracia, Donald J.
name: Taha, Doaa
name: Anggraini, Fika Tri
name: Huang, Zhi-Feng
Publisher: name: arXiv
Year: 2018
Subjects: subject: Cell Behavior (q-bio.CB)
subject: Adaptation and Self-Organizing Systems (nlin.AO)
subject: Biological Physics (physics.bio-ph)
subject: FOS: Biological sciences
subject: FOS: Physical sciences

description: Medical conditions due to acute cell injury, such as stroke and heart attack, are of tremendous impact and have attracted huge amounts of research effort. The biomedical research that seeks cures for these conditions has been dominated by a qualitative, inductive mindset. Although the inductive approach has not been effective in developing medical treatments, it has amassed enough information to allow construction of quantitative, deductive models of acute cell injury. In this work we develop a modeling approach by extending an autonomous nonlinear dynamic theory of acute cell injury that offered new ways to conceptualize cell injury but possessed limitations that decrease its effectiveness. Here we study the global dynamics of the cell injury theory using a nonautonomous formulation. Different from the standard scenario in nonlinear dynamics that is determined by the steady state and fixed points of the model equations, in this nonautonomous model with a trivial fixed point, the system property is dominated by the transient states and the corresponding dynamic processes. The model gives rise to four qualitative types of dynamical patterns that can be mapped to the behavior of cells after clinical acute injuries. The nonautonomous theory predicts the existence of a latent stress response capacity (LSRC) possessed by injured cells. The LSRC provides a theoretical explanation of how therapies, such as hypothermia, can prevent cell death after lethal injuries. The nonautonomous theory of acute cell injury provides an improved quantitative framework for understanding cell death and recovery and lays a foundation for developing effective therapeutics for acute injury.
description: 27 pages, 8 figures; Phys. Rev. E, in press
Minimal Entropy of States Emerging from Noisy Quantum Channels
Creators: name: King, C.
name: Ruskai, M. B.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: In this paper, we consider the minimal entropy of qubit states transmitted through two uses of a noisy quantum channel, which is modeled by the action of a completely positive trace-preserving (or stochastic) map. We provide strong support for the conjecture that this minimal entropy is additive, namely that the minimum entropy can be achieved when product states are transmitted. Explicitly, we prove that for a tensor product of two unital stochastic maps on qubit states, using an entanglement that involves only states which emerge with minimal entropy cannot decrease the entropy below the minimum achievable using product states. We give a separate argument, based on the geometry of the image of the set of density matrices under stochastic maps, which suggests that the minimal entropy conjecture holds for non-unital as well as for unital maps. We also show that the maximal norm of the output states is multiplicative for most product maps on $n$-qubit states, including all those for which at least one map is unital. For the class of {\it unital} channels on ${\bf C}^2$, we show that additivity of minimal entropy implies that the Holevo capacity of the channel is {\it additive} over two inputs, achievable with orthogonal states, and equal to the Shannon capacity. This implies that superadditivity of the capacity is possible only for non-unital channels.
description: LATEX file; 44 pages, 7 figures; references added, typos corrected; extended discussion of additivity for minimal entropy vs capacity
Relativistic semiclassical wave equation and its solution
Creators: name: Sergeenko, M. N.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The properties of relativistic particles in the quasiclassical region are investigated. The relativistic semiclassical wave equation appropriate in the quasiclassical region is derived. It is shown that the leading-order WKB quantization rule is the appropriate method to solve the equation obtained.
description: 12 pages, LaTex
Reaction-Diffusion Processes of Hard-Core Particles
Creators: name: Schütz, Gunter M.
Publisher: name: arXiv
Year: 1994
Subjects: subject: Condensed Matter (cond-mat)
subject: Adaptation and Self-Organizing Systems (nlin.AO)
subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: FOS: Physical sciences

description: We study a 12-parameter stochastic process involving particles with two-site interaction and hard-core repulsion on a $d$-dimensional lattice. In this model, which includes the asymmetric exclusion process, contact processes and other processes, the stochastic variables are particle occupation numbers taking values $n_{\vec{x}}=0,1$. We show that on a 10-parameter submanifold the $k$-point equal-time correlation functions $\exval{n_{\vec{x}_1} \cdots n_{\vec{x}_k}}$ satisfy linear differential- difference equations involving no higher correlators. In particular, the average density $\exval{n_{\vec{x}}} $ satisfies an integrable diffusion-type equation. These properties are explained in terms of dual processes and various duality relations are derived. By defining the time evolution of the stochastic process in terms of a quantum Hamiltonian $H$, the model becomes equivalent to a lattice model in thermal equilibrium in $d+1$ dimensions. We show that the spectrum of $H$ is identical to the spectrum of the quantum Hamiltonian of a $d$-dimensional, anisotropic spin-1/2 Heisenberg model. In one dimension our results hint at some new algebraic structure behind the integrability of the system.
description: LATEX, 18 pages, to be published in J. Stat. Phys
Spectral-based regression model for destriping of abnormal pixel values in PRISMA hyperspectral image
Creators: name: Sajadi, Payam
name: Gholamnia, Mehdi
name: Bonafoni, Stefania
name: Pilla, Francesco
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Cancer

description: Hyperspectral imageries are often degraded by systematic sensor-based errors known as “striping noises”. This study implements a spectral-based regression algorithm from highly correlated consecutive bands, i.e. left band, right band or both, to model and reconstruct the abnormal pixel values, stripe noises, in various bands of PRISMA (PRecursore IperSpettrale della Missione Applicativa) imagery. The modeling performance was evaluated based on the statistical difference between the reconstructed images’ pixel values (reflectance) and their corresponding original pixel values. Results referred to the model’s high accuracy in R2, RMSE, rRMSE and skewness in most bands (0.9492<R2<0.9995;0.0008<RMSE<0.0254;0.0116\break<rRMSE<0.5713−0.9280<skewness<0.2708). Furthermore, the results indicated that the combination of both bands had higher accuracy and pixels’ homogeneity preservation compared to single-band modeling. Our findings suggested that the algorithm significantly depends on the spectral similarities between neighboring bands so that the higher spectral similarities lead to the higher model performance and vice versa. Subsequently, the minimum model performance was observed in band 143 due to lower spectral similarity, lower spectral correlation and higher wavelength differences with its adjacent right band. Finally, the study suggests that alongside other methods, our algorithm may be used as a reliable, straightforward and accurate alternative for destriping different Earth observation satellite imageries. Limitations of the proposed approach are also discussed.
Chrysomela vitellinae Linnaeus, 1758, spec. nov.
Creators: name: Linnaeus, Carolus
Publisher: name: Laurentius Salvius
Year: 1758
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Chrysomela
Chrysomela vitellinae

description: Chrysomela vitellinae [spec. nov.]
C. ovata aenea.
Chrysomela aenei coloris. Fn. svec. 426.
Roes. ins. 2. scar. 3. p. 5. t. 1.
Habitat in Salicibus glabris Populoque, folia subtus consumens.
Dum pascuntur larvae disponuntur per lineas parallelas.
description: Published as part of Linnaeus, Carolus, 1758, Systema Naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Stockholm :Laurentius Salvius on page 370, DOI: 10.5962/bhl.title.542, http://zenodo.org/record/3922206
Analysis of spatial-temporal evolution of landscape patterns in ancient large city-sites based on multi-temporal Landsat imagery: a case study of the Zhouyuan site region in China
Creators: name: Chen, Jian
name: Zhang, Yanlong
name: Liu, Xifan
name: Sun, Xihui
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Astronomical and Space Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Computational Biology

description: This study takes the Zhouyuan site region, which is the most representative Western Zhou Dynasty (1046 BC-771BC) large city-site in China, as an example. Based on the interpretation results of satellite remote sensing images from 1973 to 2021, the paper systematically analyzed the evolution of landscape patterns in the Zhouyuan site region spanning for about 50 years using 4 methods, including land use classification, land use transfer matrix, landscape pattern distribution gravity center model and landscape pattern index. Additionally, the results show that nowadays Zhouyuan site is still in a period of accelerated invasion and destruction by natural and human factors, which indicates that the protection of the Zhouyuan site has been inadequate or even unsuccessful for a long time. For the purpose of making more accurate and better protection of the Zhouyuan site, four challenges and six protection recommendations have been put forward. Based on remote sensing and geographic information system (GIS), this paper contributed a method combining 4 models to analyze the spatial-temporal evolution characteristics of landscape pattern of ancient large city-sites, in order to provide more basis for the formulation of cultural relic protection strategies.
Form factors for pions couplings to constituent quarks under weak magnetic field
Creators: name: Braghin, Fabio L.
name: de Sousa, Willian F.
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: By considering a one loop background field method for a nonperturbative one gluon exchange between quarks, leading electromagnetic form factors of pion couplings to constituent quarks are derived by means of from a large quark and gluon effective masses expansion. With this calculation the leading anisotropic corrections induced by a weak magnetic field for the pion-constituent quark form factors are obtained. Besides that, few effective couplings which emerge only due to the weak magnetic field that break chiral and isospin symmetry are also found. Numerical estimations for these magnetic field corrections are presented for two different nonperturbative gluon propagators. All of these corrections are ultraviolet finite and their relative values are found to be of order of $(eB_0/{M^*}^2)^n$ being $n=1$ for the vector and axial pion couplings and $n=2$ for the pseudoscalar and scalar ones. The corresponding anisotropic corrections to the Strong averaged quadratic radii in the plane perpendicular to the magnetic field are also calculated as functions of the quark effective mass.
description: 20 pages, revised, reduced and improved manuscript, 7 figures, with some more calculation
Chrysomela polygoni Linnaeus, 1758, spec. nov.
Creators: name: Linnaeus, Carolus
Publisher: name: Laurentius Salvius
Year: 1758
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Chrysomela
Chrysomela polygoni

description: Chrysomela polygoni [spec. nov.]
C. ovata caerulea, thorace femoribus anoque rufis.
Fn. svec. 440.
Reaum. ins. 3. t. 17. f. 15.
Habitat in Polygono aviculari, terrestris.
description: Published as part of Linnaeus, Carolus, 1758, Systema Naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Stockholm :Laurentius Salvius on page 370, DOI: 10.5962/bhl.title.542, http://zenodo.org/record/3922206
MOESM4 of Regulatory processes that control haploid expression of salmon sperm mRNAs
Creators: name: Schalburg, Kristian
name: Rondeau, Eric
name: Leong, Jong
name: Davidson, William
name: Koop, Ben
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Evolutionary Biology
subject: Developmental Biology
subject: Cancer
subject: 60506 Virology

description: Additional file 4. Identification of various potential processing control signals within 5’-utrs of mammalian sperm-specific mRNAs. Positions of recognition motifs for CREB/CREM, FOXL2 or Y-box are highlighted in yellow, blue or green, respectively. Of ten known CREM-dependent mammalian sperm mRNAs [3, 26], nine contain imperfect CREs in their 5’-utrs. Potential motifs with unknown binding partners that are duplicated at least twice within 5’-utrs are also shown (purple and/or underlined). A specific element (CCTGCT in bold) is found at least once in each of the four mRNAs that encode chromatin-restructuring factors (except tnp1). At least two GC-rich elements in spata18 may serve as recognition elements for a similar protein (bold).
Strong Determinism vs. Computability
Creators: name: Calude, C.
name: Campbell, D. I.
name: Svozil, K.
name: Ştefănecu, D.
Publisher: name: arXiv
Year: 1994
Subjects: subject: Quantum Physics (quant-ph)
subject: Chaotic Dynamics (nlin.CD)
subject: FOS: Physical sciences

description: Are minds subject to laws of physics? Are the laws of physics computable? Are conscious thought processes computable? Currently there is little agreement as to what are the right answers to these questions. Penrose goes one step further and asserts that: {\it a radical new theory is indeed needed, and I am suggesting, moreover, that this theory, when it is found, will be of an essentially non-computational character.} The aim of this paper is three fold: 1) to examine the incompatibility between the hypothesis of strong determinism and computability, 2) to give new examples of uncomputable physical laws, and 3) to discuss the relevance of Gödel's Incompleteness Theorem in refuting the claim that an algorithmic theory---like strong AI---can provide an adequate theory of mind. Finally, we question the adequacy of the theory of computation to discuss physical laws and thought processes.
description: 13 pages, LaTeX
Finitary isomorphisms of Poisson point processes
Creators: name: Soo, Terry
name: Wilkens, Amanda
Publisher: name: arXiv
Year: 2018
Subjects: subject: Probability (math.PR)
subject: FOS: Mathematics
subject: 37A35, 60G10, 60G55

description: As part of a general theory for the isomorphism problem for actions of amenable groups, Ornstein and Weiss (J. Anal. Math. 48:1-141,1987) proved that any two Poisson point processes are isomorphic as measure-preserving actions. We give an elementary construction of an isomorphism between Poisson point processes that is finitary.
description: Published version at https://doi.org/10.1214/18-AOP1332 in the Annals of Probability by the Institute of Mathematical Statistics
"Level Curvature" Distribution for Diffusive Aharonov-Bohm Systems: analytical results
Creators: name: Fyodorov, Yan V.
name: Sommers, H-J.
Publisher: name: arXiv
Year: 1994
Subjects: subject: Condensed Matter (cond-mat)
subject: Chaotic Dynamics (nlin.CD)
subject: FOS: Physical sciences

description: We calculate analytically the distributions of "level curvatures" (LC) (the second derivatives of eigenvalues with respect to a magnetic flux) for a particle moving in a white-noise random potential. We find that the Zakrzewski-Delande conjecture is still valid even if the lowest weak localization corrections are taken into account. The ratio of mean level curvature modulus to mean dissipative conductance is proved to be universal and equal to $2π$ in agreement with available numerical data.
description: 12 pages. Submitted to Phys.Rev.E
Additional file 2: of Physiotherapy for injured workers in Canada: are insurers’ and clinics’ policies threatening good quality and equity of care? Results of a qualitative study
Creators: name: Hudon, Anne
name: Hunt, Matthew
name: Feldman, Debbie Ehrmann
Publisher: name: figshare
Year: 2018
Subjects: Medicine
Science Policy

description: Summary of key questions asked to leaders and administrators participating in the study. (DOCX 147 kb)
Deterministic Quantum State Transformations
Creators: name: Chefles, Anthony
Publisher: name: arXiv
Year: 1999
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We derive a necessary condition for the existence of a completely-positive, linear, trace-preserving map which deterministically transforms one finite set of pure quantum states into another. This condition is also sufficient for linearly-independent initial states. We also examine the issue of quantum coherence, that is, when such operations maintain the purity of superpositions. If, in any deterministic transformation from one linearly-independent set to another, even a single, complete superposition of the initial states maintains its purity, the initial and final states are related by a unitary transformation.
description: Minor cosmetic changes
WHALE: Flujo de trabajo para el análisis de datos de secuenciación del genoma mediante lecturas largas optimizado para el estudio y diagnóstico de enfermedades raras
Creators: name: Farias-Varona, Rafael
Publisher: name: Zenodo
Year: 2025
Subjects: subject: bioinformatics
subject: Rare Diseases
subject: nextflow
subject: pipeline
subject: long-read sequencing
subject: next generation sequencing

description: Rare diseases are individually infrequent pathologies, but as a whole they affect about 400 million people worldwide. Most of them have a genetic origin and follow a Mendelian inheritance pattern. For the diagnosis of these diseases it is essential to detect the causal genomic variants. Short-read Next Generation Sequencing (NGS) is the routine diagnostic test in the clinical setting to identify variants on a large scale. However, although it detects single nucleotide variants (SNVs) and small insertions and deletions (indels) with high resolution, it has some limitations, such as a low sensitivity in detecting structural variants (SVs). Long-read sequencing (LRS), also called Third Generation Sequencing and whose main platforms are Pacific Bioscience (PacBio) and Oxford Nanopore Technology (ONT), overcomes the limitations of conventional NGS and offers a better characterization of structural variation. In this master's thesis I present WHALE (Workflow for Human-genome Analysis of Long-read Experiments), a bioinformatics pipeline based on Nextflow and nf-core for long-read DNA sequencing analysis optimized for the study and diagnosis of rare diseases. WHALE performs the main steps of SNVs and SVs analysis (quality control, alignment, variant calling and annotation) and integrates the results of different variant detectors, allowing to prioritize variants with a more robust detection. WHALE performs an annotation of variants that has been agreed with the geneticists of the Genetics and Genomics Department of the Instituto de Investigación Sanitaria Fundación Jiménez Díaz (IIS-FJD) to optimize the genetic diagnosis of patients with rare diseases. In addition, an internal database has been designed to store SVs detected with WHALE to facilitate the prioritization and filtering of common SVs and possible artifacts. WHALE enables efficient and reproducible LRS analysis and can be run on high-performance computing systems or local servers. WHALE source code, documentation and installation instructions are available at https://github.com/RafaFariasVarona/WHALE.
Eddy diffusivities in scalar transport
Creators: name: Biferale, L.
name: Crisanti, A.
name: Vergassola, M.
name: Vulpiani, A.
Publisher: name: arXiv
Year: 1994
Subjects: subject: Condensed Matter (cond-mat)
subject: Chaotic Dynamics (nlin.CD)
subject: Cellular Automata and Lattice Gases (nlin.CG)
subject: FOS: Physical sciences

description: Standard and anomalous transport in incompressible flow is investigated using multiscale techniques. Eddy-diffusivities emerge from the multiscale analysis through the solution of an auxiliary equation. From the latter it is derived an upper bound to eddy-diffusivities, valid for both static and time-dependent flow. The auxiliary problem is solved by a perturbative expansion in powers of the Péclet number resummed by Padé approximants and by a conjugate gradient method. The results are compared to numerical simulations of tracers dispersion for three flows having different properties of Lagrangian chaos. It is shown on a concrete example how the presence of anomalous diffusion can be revealed from the singular behaviour of the eddy-diffusivity at very small molecular diffusivities.
description: 21 Pages + 6 Figures Postscript (appended as .tar file), Latex submitted Phys of Fluids
Chrysomela pallida Linnaeus, 1758, spec. nov.
Creators: name: Linnaeus, Carolus
Publisher: name: Laurentius Salvius
Year: 1758
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Chrysomela
Chrysomela pallida

description: Chrysomela pallida [spec. nov.]
C. ovata flavescens tota, oculis nigris.
Fn. svec. 423. Chrysomela pallido-grisea.
Habitat in Salicibus.
description: Published as part of Linnaeus, Carolus, 1758, Systema Naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Stockholm :Laurentius Salvius on page 370, DOI: 10.5962/bhl.title.542, http://zenodo.org/record/3922206
Time-of-arrival distributions from position-momentum and energy-time joint measurements
Creators: name: Baute, A. D.
name: Egusquiza, I. L.
name: Muga, J. G.
name: Sala-Mayato, R.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The position-momentum quasi-distribution obtained from an Arthurs and Kelly joint measurement model is used to obtain indirectly an ``operational'' time-of-arrival (TOA) distribution following a quantization procedure proposed by Kochański and Wódkiewicz [Phys. Rev. A 60, 2689 (1999)]. This TOA distribution is not time covariant. The procedure is generalized by using other phase-space quasi-distributions, and sufficient conditions are provided for time covariance that limit the possible phase-space quasi-distributions essentially to the Wigner function, which, however, provides a non-positive TOA quasi-distribution. These problems are remedied with a different quantization procedure which, on the other hand, does not guarantee normalization. Finally an Arthurs and Kelly measurement model for TOA and energy (valid also for arbitrary conjugate variables when one of the variables is bounded from below) is worked out. The marginal TOA distribution so obtained, a distorted version of Kijowski's distribution, is time covariant, positive, and normalized.
Additional file 1: of Evolution within a language: environmental differences contribute to divergence of dialect groups
Creators: name: Honkola, Terhi
name: Ruokolainen, Kalle
name: Syrjänen, Kaj
name: Unni-Päivä Leino
name: Tammi, Ilpo
name: Wahlberg, Niklas
name: Vesakoski, Outi
Publisher: name: figshare
Year: 2018
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 60506 Virology

description: Table S1. Explanatory variables and their usage in the analyses. * Abbreviations used in Tables S2 and S3. Variables without abbreviations were eliminated in the partial Mantel analyses. † Variables which were left after the partial Mantel test and correlation observations and were inserted to MRM analyses. ‡ Variables left in the final models. § Variables from which averages and sums were calculated for the municipality data. ¶ Sums of per municipality (instead of average) values were calculated for these variables. (DOCX 19 kb)
Magnetization switching in nanoscale ferromagnetic grains: description by a kinetic Ising model
Creators: name: Richards, Howard L.
name: Sides, Scott W.
name: Novotny, M. A.
name: Rikvold, Per Arne
Publisher: name: arXiv
Year: 1994
Subjects: subject: Condensed Matter (cond-mat)
subject: Adaptation and Self-Organizing Systems (nlin.AO)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The magnetic relaxation of ferromagnetic powders has been studied for many years, largely due to its importance to recording technologies. However, only recently have experiments been performed that resolve the magnetic state of individual sub-micron particles. Motivated by these experimental developments, we use droplet theory and Monte Carlo simulations to study the time and field dependence of some quantities that can be observed by magnetic force microscopy. Particular emphasis is placed on the effects of finite particle size. The qualitative agreement between experiments on switching and our simulations in individual single-domain ferromagnets suggests that the switching mechanism in such particles may involve local nucleation and subsequent growth of droplets of the stable phase.
description: 17 pages, RevTeX 3.0, 15 tar-compressed and uu-encoded figures. Submitted to J. Magn. Magn. Mater
Anti-de-Sitter-Maxwell-Yang-Mills black holes thermodynamics from nonlocal observables point of view
Creators: name: Moumni, H. El
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In this paper, we analyze the thermodynamic properties of the Anti de Sitter black hole in the Einstein-Maxwell-Yang-Mills-AdS gravity (EMYM) via many approaches and in different thermodynamical ensembles (canonical/ grand canonical). First, we give a concise overview of this phase structure in the entropy-thermal diagram for fixed charges then we investigate this thermodynamical structure in fixed potentials ensemble. The Next relevant step is recalling the nonlocal observables such as holographic entanglement entropy and two-point correlation function to show that both observables exhibit a Van der Waals-like behavior in our numerical accuracy and just near the critical line as the case of the thermal entropy for fixed charges by checking Maxwell's equal area law and the critical exponent. In the light of the grand canonical ensemble, we also find a newly phase structure for such a black hole where the critical behavior disappears in the thermal picture as well as in the holographic one.
description: 23 pages, 9 figures, Advances in High Energy Physics accepted version
Quantum fluctuations of the angular momentum and energy of the ground state
Creators: name: Sergeenko, M. N.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Quasiclassical solution of the three-dimensional Schredinger's equation is given. The existence of nonzero minimal angular momentum M_0 = \hbar /2 is shown, which corresponds to the quantum fluctuations of the angular momentum and contributes to the energy of the ground state.
description: 5 pages, LaTex
Symmetries and Mean-Field Phases of the Extended Hubbard Model
Creators: name: Eriksson, A. B.
name: Einarsson, T.
name: Ostlund, S.
Publisher: name: arXiv
Year: 1994
Subjects: subject: Condensed Matter (cond-mat)
subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: The two-dimensional extended Hubbard model that includes a nearest- neighbor Heisenberg interaction is studied using a mean-field theory where quasiparticles are defined by an U(8) group of canonical transformations. The theory is a generalization of the ordinary BCS theory, and Balian and Werthamer's theory of He-3 that permits both broken gauge, spin and sublattice symmetry. This allows us to investigate superconductivity, antiferromagnetic order, charge density waves and, by twisting the spin quantization axis, spiral antiferromagnetic order in the same theory. Our results for positive Hubbard U and Heisenberg exchange J suggest that antiferromagnetic ordering dominates close to half filling, while spiral states and d-wave superconductivity compete when doping is introduced. For moderate values of J, we find a phase diagram where a phase transition occurs from an antiferromagnet to a d-wave superconductor as doping is increased. A narrow region of (s+id)-wave superconductor is found for some values of J and U.
description: Revtex, 27 pages, 8 figures uuencoded with uufiles. Replaced because (s+id)-wave superconductivity is found (not (s+d)-wave)
Impossibility of deleting an unknown quantum state
Creators: name: Pati, Arun Kumar
name: Braunstein, Samuel L.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: A photon in an arbitrary polarization state cannot be cloned perfectly. But suppose that at our disposal we have several copies of an unknown photon. Is it possible to delete the information content of one or more of these photons by a physical process? Specifically, if two photons are in the same initial polarization state is there a mechanism that produces one photon in the same initial state and the other in some standard polarization state. If this can be done, then one would create a standard blank state onto which one could copy an unknown state approximately, by deterministic cloning or exactly, by probabilistic cloning. This might be useful in quantum computation, where one could store some new information in an already computed state by deleting the old information. Here we show that the linearity of quantum theory does not allow us to delete a copy of an arbitrary quantum state perfectly. Though in a classical computer information can be deleted against a copy, the same task cannot be accomplished with quantum information.
description: 4 Pages, (Published version Nature, 404 (2000) 164)
Deviations from Fermi-liquid behavior above $T_c$ in 2D short coherence length superconductors
Creators: name: Trivedi, Nandini
name: Randeria, Mohit
Publisher: name: arXiv
Year: 1994
Subjects: subject: Condensed Matter (cond-mat)
subject: Materials Science (cond-mat.mtrl-sci)
subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We show that there are qualitative differences between the temperature dependence of the spin and charge correlations in the normal state of the 2D attractive Hubbard model using quantum Monte Carlo simulations. The one-particle density of states shows a pseudogap above $\tc$ with a depleted $N(0)$ with decreasing $T$. The susceptibility $\cs$ and the low frequency spin spectral weight track $N(0)$, which explains the spin-gap scaling: $1/T_1T \sim \cs(T)$. However the charge channel is dominated by collective behavior and the compressibility $dn/dμ$ is $T$-independent. This anomalous ``spin-charge separation'' is shown to exist even at intermediate $|U|$ where the momentum distribution $n(\bk)$ gives evidence for degenerate Fermi system.
description: 4 pages (twocolumn format), 5 Postscript figures