Supplementary Figure 1. Localisation of YFP::TbOFD1 in procyclic T. brucei; Supplementary Figure 2. Orthology of Tb927.10.3000 and HsOFD1; Supplementary Figure 3. Penetrance of TbFOP RNAi from A centriolar FGR1 oncogene partner-like protein required for paraflagellar rod assembly, but not axoneme assembly in African trypanosomes.
Creators: name: Harmer, Jane
name: Towers, Katie
name: Addison, Max
name: Vaughan, Sue
name: Ginger, Michael L.
name: McKean, Paul G.
Publisher: name: The Royal Society
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: FOS: Biological sciences
subject: Cell Biology

description: Localisation of Tb927.10.3000 gene product in procyclic T. brucei. (A-B) YFP::Tb927.10.3000 is present at mature basal bodies throughout procyclic cell cycle. Monoclonal antibody YL1/2 detected tyrosinated α-tubulin prominent on subpellicular microtubules at the posterior pole of whole cells and TbRP2 (Reference 4 in the main text) at the mature basal body. Scale bars in all main panels indicate 5 µm and in the inset panels 1 µm.; Orthology of Tb927.10.3000 and HsOFD1. (A) Cartoon representation of human and T. brucei OFD1 proteins, showing insertions necessary to achieve maximal alignment of amino acid sequences. (B) Amino acid alignment of Homo sapiens (Accession number AC003037.1) and T. brucei (Tb927.10.3000) OFD1. (C) Effect of Tb927.10.3000 RNAi induction on trypanosome growth (triangles; solid line) compared to RNAi non-induced controls (diamonds; dashed line); immunoblotting with monoclonal antibody BB2 (detecting an N-terminal Ty-epitope) indicated depletion of YFP::Tb927.10.3000 post-RNAi induction. Polyclonal rabbit sera detecting trypanosome adenylate kinase isoform F (Ginger ML et al. 2005 J. Biol. Chem. 280, 11781-9 doi: 10.1074/jbc.M413821200) was used as a loading control. (D) Preliminary analysis of cell morphology following Tb927.10.3000 RNAi induction: cells were scored for normal morphology versus assembly of an abnormal, short flagellum (at 24 h post-RNAi induction n = 51 ‘non-induced’ cells / n = 67 ‘induced’ cells; 48 h post-induction n = 41 ‘non-induced’ / n = 75 ‘induced’; 72 h post-induction n = 39 ‘non-induced’ / n = 95 ‘induced’; 96 h post-induction n = 25 ‘non-induced’ / n = 123 ‘induced’). (E-M) Electron and fluorescence microscopy analysis of cell morphology: E-G, TEM analysis illustrating in short flagella the accumulation of electron dense material, potentially including unassembled PFR components, around normal 9+2 axoneme architecture; H-J, SEM analysis illustrating the short flagellum phenotype of Tb927.10.3000 RNAi mutants; K-L, fluorescence microscopy illustrating mixed ‘short flagellum’ and ‘short cell’ phenotypes in Tb927.10.3000 RNAi mutants (96 h post-RNAi induction); M, normal cell morphologies in Tb927.10.3000 cells not induced for RNAi against Tb927.10.3000. In K-M, the PFR is immunolabelled with monoclonal antibody L8C4 (red); DAPI (blue) was used to stain nuclear and kinetoplast DNA. Assessment of OFD1 candidature. Mature basal body localisation of YFP::Tb927.10.3000 is analogous to mature centriole localisation of human OFD1 (Singla V et al. (2010) Dev. Cell 18, 410-24 doi: 10.1016/j.devcel.2009.12.022). The short flagellum phenotype of the RNAi mutant resembled published T. brucei intraflagellar transport (IFT) RNAi phenotypes: the short flagellum phenotype of Tb927.10.3000 RNAi mutants is more similar in presentation to the phenotype arising from defective retrograde IFT than it is to defective anterograde IFT mutants, which fail to elongate an axoneme beyond the transition zone, and thus fail to build flagella (Absalon S et al. (2008) Mol. Biol. Cell 19, 929-44 doi: 10.1091/mbc.E07-08-0749; Davidge J et al. (2006) J. Cell Sci. 119, 3935-43 doi: 10.1242/jcs.03203). Flagellar membrane elongation or ‘flagellar sleeve’, seen in some T. brucei IFT mutants (Davidge et al. 2006), was also evident in SEM micrographs of Tb927.10.3000 RNAi-induced mutants. Loss of YFP::Tb927.10.3000 beneath the threshold of detection by immunoblot was evident 24 h post-RNAi induction, but presentation of the short flagellum phenotype was never evident across all cells in RNAi-induced cultures even by 96 h post-induction. We interpret such partial presentation of morphological phenotype, in contrast to the depletion of YFP::Tb927.10.3000 beneath a threshold level of detection, coupled to literature reports of OFD1 function in mammals, including a requirement in murine embryonic stem cells for OFD1 in formation of centriole distal-end appendages and IFT88 recruitment, to suggest that protein encoded by Tb927.10.3000 provides regulatory or indirect function(s) in IFT, rather than being a core part of the IFT machinery. In summary, candidature of Tb927.10.3000 as an OFD1 ortholog based only on amino acid sequence alignment with HsOFD1 is equivocal, but coupled to comprehensive preliminary RNAi phenotype analysis evidence for OFD1 candidature is persuasive.; Penetrance of TbFOPL RNAi. Representative fields of view for whole cells show rapid loss of normal cell morphology and aberration of normal PFR biogenesis in populations at 24 (A-C) and 48 (D-F) h post-RNAi induction. Scale bars represent 10 μm.