cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Incidence of colorectal cancer at different screening intervals after index colonoscopy and post-polypectomy: a meta-analysis of 811,181 participants
Creators: name: Zhang, Yu
name: Wang, Xueli
name: Zhang, Wei
name: Zhou, Xinxin
name: Ren, Mengting
name: Chen, Huiyan
name: Pan, Hanghai
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Science Policy
subject: Virology

description: To examine the evidence on the incidence of colorectal cancers (CRCs) at a follow-up screening colonoscopy (after index colonoscopy and post-polypectomy) in individuals with no adenoma, low-risk adenomas, and high-risk adenomas. We included studies reporting the incidence of CRCs at different screening intervals after index colonoscopy and post-polypectomy. The main outcome was pooled cumulative incidence rate of CRCs stratified by intervals of 3, 5, 10, and >10 years. Fourteen studies with 811,181 participants were analyzed, including 10 multicenter studies and 3 national CRC screening programs. The cumulative incidence of CRCs was 0.63% (95% confidence interval [CI]: 0.30, 0.97) in the high-risk-adenoma group at 3 years, 0.37% (95% CI: 0.13, 0.61) and 0.67% (95% CI: 0.36, 0.99) in the low-risk-adenoma group at 5 and 10 years, respectively, and 0.32% (95% CI: 0.20, 0.45) and 0.50% (95% CI: 0.30, 0.69) in the no-adenoma-group at 10 and >10 years, respectively. This meta-analysis summarizes the results of colonoscopy surveillance programs with detailed data support for different screening intervals. The data on date suggest that reasonable surveillance intervals are within 3 years for the high-risk-adenoma group, 5–10 years for the low-risk-adenoma group, and ≥10 years for the no-adenoma group.
sj-pdf-1-jhc-10.1369_00221554211047287 – Supplemental material for Rejuvenated Vintage Tissue Sections Highlight Individual Antigen Fate During Processing and Long-term Storage
Creators: name: Mascadri, Francesco
name: Bolognesi, Maddalena M.
name: Pilla, Daniela
name: Cattoretti, Giorgio
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: Cell Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: FOS: Clinical medicine

description: Supplemental material, sj-pdf-1-jhc-10.1369_00221554211047287 for Rejuvenated Vintage Tissue Sections Highlight Individual Antigen Fate During Processing and Long-term Storage by Francesco Mascadri, Maddalena M. Bolognesi, Daniela Pilla and Giorgio Cattoretti in Journal of Histochemistry & Cytochemistry
sj-pdf-1-tcp-10.1177_00110000211037671 – Supplemental Material for “I Want to Be Safe…And I Also Want a Job”: Career Considerations and Decision-Making Among Transgender Graduate Students
Creators: name: Goldberg, Abbie E.
name: Matsuno, Emmie
name: Beemyn, Genny
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental Material, sj-pdf-1-tcp-10.1177_00110000211037671 for “I Want to Be Safe…And I Also Want a Job”: Career Considerations and Decision-Making Among Transgender Graduate Students by Abbie E. Goldberg, Emmie Matsuno and Genny Beemyn in The Counseling Psychologist
title: Equity of out-of-home parcel delivery services. Case study: Poznań agglomeration
Creators: name: Zmuda-Trzebiatowski, Paweł
Publisher: name: Poznań University of Technology
publisherIdentifier: https://ror.org/00p7p3302
publisherIdentifierScheme: ROR
Year: 2024

description: Zeszyty Naukowe Politechniki Poznańskiej. Organizacja i Zarządzanie, 90, 119-139
Additional file 1 of Sex-based differences in growth-related IGF1 signaling in response to PAPP-A2 deficiency: comparative effects of rhGH, rhIGF1 and rhPAPP-A2 treatments
Creators: name: Fernández-Arjona, María del Mar
name: Navarro, Juan Antonio
name: López-Gambero, Antonio Jesús
name: de Ceglia, Marialuisa
name: Rodríguez, Miguel
name: Rubio, Leticia
name: Rodríguez de Fonseca, Fernando
name: Barrios, Vicente
name: Chowen, Julie A.
name: Argente, Jesús
name: Rivera, Patricia
name: Suárez, Juan
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine

description: Supplementary Material 1
MPEC 2025-F98 : 2025 FJ4
Creators: name: Minor Planet Center Staff
Publisher: name: The Minor Planet Center
Year: 2025
Subjects: subject: Small Solar System bodies
valueUri: http://astrothesaurus.org/uat/1469
subject: 2025 FJ4

description: The Minor Planet Electronic Circulars contain information on unusual minor planets, routine data on comets and natural satellites, and occasional editorial announcements.  They are published on behalf of Division F of the International Astronomical Union by the Minor Planet Center, Smithsonian Astrophysical Observatory, Cambridge, MA 02138, U.S.A.
A literature review on analytical methods in construction master scheduling to generate a competitive advantage
Creators: name: Lauble, Svenja
name: Zielke, Philipp
name: Haghsheno, Shervin
Publisher: name: Karlsruher Institut für Technologie (KIT)
Year: 2024
Subjects: Master scheduling
analytics
artificial intelligence
literature review

description: In the early phases of construction projects, initial client-set durations often face challenges due
to evolving project dynamics. Despite extensive research on accurate planning, practical case
studies indicate shortcomings in early-phase predictions, with analytical planning methods
underutilized despite technological advancements.
This study investigates analytical methodologies used in research for master scheduling in
construction projects, aiming to identify gaps and potentials for further research. A systematic
literature review of 386 relevant sources categorized methodologies into statistical analyses,
extrapolations, predictive techniques, and optimization methods. While statistical analyses are
prevalent, predictive methods and optimizations are less explored, indicating a need to adopt
advanced analytical methods for robust master scheduling models in construction projects.
Addressing comprehensible methods at an advanced analytical level is crucial for enhancing
effectiveness and applicability in this context.
Supplemental Material, sj-docx-1-spp-10.1177_19485506211042683 - Does Danger Level Affect Bystander Intervention in Real-Life Conflicts? Evidence From CCTV Footage
Creators: name: Lindegaard, Marie Rosenkrantz
name: Liebst, Lasse Suonperä
name: Philpot, Richard
name: Levine, Mark
name: Bernasco, Wim
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental Material, sj-docx-1-spp-10.1177_19485506211042683 for Does Danger Level Affect Bystander Intervention in Real-Life Conflicts? Evidence From CCTV Footage by Marie Rosenkrantz Lindegaard, Lasse Suonperä Liebst, Richard Philpot, Mark Levine and Wim Bernasco in Social Psychological and Personality Science
Conformational Changes in HSV gC and Fusion Activity of HSV Glycoproteins from a Hyperfusogenic Virus
Creators: name: Gianopulos, Katrina
Publisher: name: Washington State University
Year: 2026
Subjects: Hyperfusogenic Virus
Cell Biology

description: Herpes simplex virus 1 (HSV-1) affects 60 to 90 percent of the world population. There is currently no vaccine available for HSV, and the only treatment for active infections is antivirals. Once infected with HSV, there is a lifelong latent infection with the possibility of reactivation caused by stress or in patients that are immunocompromised. Viral entry during infection is a target for vaccine development, so understanding the mechanisms of viral entry are important. For HSV entry to occur, viral glycoproteins B, D, H, and L are required. HSV glycoprotein C (gC) is important for low pH entry where it optimizes the function of the main fusogen glycoprotein B. Here we determined that mildly acidic pH triggered reversible conformational change in gC itself. A monoclonal antibody that binds to a linear sequence that includes residues within gC amino acids 33 to 123 inhibited low pH entry of HSV. This suggests that the gC N-terminus is particularly important. We also examined the fusion-from-without strain ANG strain of HSV-1 that has unique entry and fusion phenotypes. Sequencing revealed several mutations in HSV-1 ANG gB, gC, gD, gH, and gL genes. ANG gB, when expressed with wild type gD and gH/gL, increased membrane fusion, suggesting that ANG gB has hyperfusogenic cell-cell fusion activity. Replacing the wild type gD, gH, or gL with the corresponding ANG alleles did not enhance cell-cell fusion. Overall, we have increased our understanding of herpesviral membrane fusion and revealed novel potential viral determinants.
sj-pdf-1-ajs-10.1177_03635465211039850 – Supplemental material for Shoulder External Rotational Properties During Physical Examination Are Associated With Injury That Requires Surgery and Shoulder Joint Loading During Baseball Pitching
Creators: name: Stokes, Hannah
name: Eaton, Koco
name: Zheng, Naiquan (Nigel)
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 110314 Orthopaedics
subject: FOS: Clinical medicine
subject: 110604 Sports Medicine
subject: FOS: Health sciences
subject: 110323 Surgery

description: Supplemental material, sj-pdf-1-ajs-10.1177_03635465211039850 for Shoulder External Rotational Properties During Physical Examination Are Associated With Injury That Requires Surgery and Shoulder Joint Loading During Baseball Pitching by Hannah Stokes, Koco Eaton and Naiquan (Nigel) Zheng in The American Journal of Sports Medicine
MPEC 2025-F99 : 2025 FK4
Creators: name: Minor Planet Center Staff
Publisher: name: The Minor Planet Center
Year: 2025
Subjects: subject: Small Solar System bodies
valueUri: http://astrothesaurus.org/uat/1469
subject: 2025 FK4

description: The Minor Planet Electronic Circulars contain information on unusual minor planets, routine data on comets and natural satellites, and occasional editorial announcements.  They are published on behalf of Division F of the International Astronomical Union by the Minor Planet Center, Smithsonian Astrophysical Observatory, Cambridge, MA 02138, U.S.A.
Additional file 2 of Sex-based differences in growth-related IGF1 signaling in response to PAPP-A2 deficiency: comparative effects of rhGH, rhIGF1 and rhPAPP-A2 treatments
Creators: name: Fernández-Arjona, María del Mar
name: Navarro, Juan Antonio
name: López-Gambero, Antonio Jesús
name: de Ceglia, Marialuisa
name: Rodríguez, Miguel
name: Rubio, Leticia
name: Rodríguez de Fonseca, Fernando
name: Barrios, Vicente
name: Chowen, Julie A.
name: Argente, Jesús
name: Rivera, Patricia
name: Suárez, Juan
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine

description: Supplementary Material 2
Additional file 3 of Sex-based differences in growth-related IGF1 signaling in response to PAPP-A2 deficiency: comparative effects of rhGH, rhIGF1 and rhPAPP-A2 treatments
Creators: name: Fernández-Arjona, María del Mar
name: Navarro, Juan Antonio
name: López-Gambero, Antonio Jesús
name: de Ceglia, Marialuisa
name: Rodríguez, Miguel
name: Rubio, Leticia
name: Rodríguez de Fonseca, Fernando
name: Barrios, Vicente
name: Chowen, Julie A.
name: Argente, Jesús
name: Rivera, Patricia
name: Suárez, Juan
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine

description: Supplementary Material 3
ODELIA BREAST MRI Challenge 2025
Creators: name: Escudero Sánchez, Lorena
name: Müller-Franzes, Gustav
name: Saldanha, Oliver
name: Payne, Nicholas
name: bin Abdullah, Kamarul
name: Zhang, Tianyu
name: Veldhuis, Wouter
name: Wenzel, Markus
name: Schwen, Lars Ole
name: Kalogeropoulos, Michael
name: López López, Aitor
name: Soro Busto, Alfredo Miguel
Publisher: name: Zenodo
Year: 2025
Subjects: MRI
Breast cancer
Classification
Multi-centre
Heterogeneity
MICCAI 2025 challenge

description: Detecting breast cancer early is of the utmost importance to effectively treat the millions of women afflicted by breast cancer worldwide every year. Although mammography (often complemented with ultrasound) is the main imaging modality for screening breast cancer in many countries, there is an increasing interest in adding magnetic resonance imaging (MRI) to screening programmes, particularly for women at high risk. Recent guidelines by the European Society of Breast Imaging (EUSOBI) indeed recommended breast MRI as an additional screening tool for women with dense breast tissue. However, analyzing large 3D volumes of MRI scans requires a considerable amount of time from expert radiologists. This highlights the need to develop new automated methods to detect cancer accurately using MRI, and Artificial Intelligence (AI) having the potential to support radiologists in breast MRI interpretation and classification, and to help detect cancer earlier.

The proposed challenge aims to obtain a generalizable algorithm for detecting malignancies in breast MRIs. Challenges for generalizability in real-world data are two-fold. On the one hand, imaging devices and modalities vary between sites, resulting, e.g., in different resolutions. On the other hand, acquisition protocols vary, so that different numbers of scan sequences are taken at different post-contrast time points.

For this purpose, the challenge will involve a dataset consisting of images from six centers in five countries  (Germany, UK, Greece, Spain and The Netherlands) acquired with different protocols and vendors, thus representing the variability of a real-world dataset. We will give an example script for pre-processing that encompasses the usual steps expected, namely: splitting the scan into each breast, cropping each half around each breast, normalising voxel intensities. However, we will not be very prescriptive as to how the pre-processing should work as we want teams to come up with their own ideas and we expect that novel solutions for pre-processing of the training dataset will play a key role in the algorithm development for the challenge, in addition to using suitable AI approaches for the actual classification task. This challenge is organised by the ODELIA project, a pan-European consortium building a software framework for swarm learning to develop the first clinically useful AI algorithm for the detection of breast cancer in MRI.
Automated Leaf-Level Hyperspectral Imaging of Soybean Plants using an UAV with a 6 DOF Robotic Arm
Creators: name: Wang, Jialei
Publisher: name: Purdue University Graduate School
Year: 2021
Subjects: Agricultural engineering
Mechanical engineering not elsewhere classified
Control engineering, mechatronics and robotics not elsewhere classified

description: Nowadays, soybean is one the most consumed crops in the world. As the human population continuously increases, new phenotyping technology is needed to help plant scientists breed soybean that has high-yield, stress-tolerant, and disease-tolerant traits. Hyperspectral imaging (HSI) is one of the most commonly used technologies for phenotyping. The current HSI techniques include HSI tower and remote sensing on an unmanned aerial vehicle (UAV) or satellite. There are several noise sources the current HSI technologies suffer from such as changes in lighting conditions, leaf angle, and other environmental factors. To reduce the noise on HS images, a new portable, leaf-level, high-resolution HSI device was developed for corn leaves in 2018 called LeafSpec. Due to the previous design requiring a sliding action along the leaf which could damage the leaf if used on a soybean leaf, a new design of the LeafSpec was built to meet the requirements of scanning soybean leaves. The new LeafSpec device protects the leaf between two sheets of glass, and the scanning action is automated by using motors and servos. After the HS images have been collected, the current modeling method for HS images starts by averaging all the plant pixels to one spectrum which causes a loss of information because of the non-uniformity of the leaf. When comparing the two modeling methods, one uses the mean normalized difference vegetation index (NDVI) and the other uses the NDVI heatmap of the entire leaf to predict the nitrogen content of soybean plants. The model that uses NDVI heatmap shows a significant increase in prediction accuracy with an R2 increase from 0.805 to 0.871. Therefore, it can be concluded that the changes occurring within the leaf can be used to train a better prediction model. Although the LeafSpec device can provide high-resolution leaf-level HS images to the researcher for the first time, it suffers from two major drawbacks: intensive labor needed to gather the image data and slow throughput. A new idea is proposed to use a UAV that carries a 6 degree of freedom (DOF) robotic arm with a LeafSpec device as an end-effect to automatically gather soybean leaf HS images. A new UAV is designed and built to carry the large payload weight of the robotic arm and LeafSpec.
Additional file 4 of Sex-based differences in growth-related IGF1 signaling in response to PAPP-A2 deficiency: comparative effects of rhGH, rhIGF1 and rhPAPP-A2 treatments
Creators: name: Fernández-Arjona, María del Mar
name: Navarro, Juan Antonio
name: López-Gambero, Antonio Jesús
name: de Ceglia, Marialuisa
name: Rodríguez, Miguel
name: Rubio, Leticia
name: Rodríguez de Fonseca, Fernando
name: Barrios, Vicente
name: Chowen, Julie A.
name: Argente, Jesús
name: Rivera, Patricia
name: Suárez, Juan
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine

description: Supplementary Material 4
title: Developing an Urban Art Music
Creators: name: March, Neil
Publisher: name: Goldsmiths, University of London
Year: 2015
Subjects: subject: Music, Contemporary Art, Urban, Spectral, Electronic, Ambient, Ethereal, New, Progressive, Modernism, Postmodern, Instrumental, Post-Spectral, Jazz, Atonal, Modal, Whole-Tone

description: The focus of my thesis is on the development of an Urban Art Music; urban in the sense that it reflects the character and events emanating from my experience of post-globalization urban society. 

The Commentary demonstrates how my approach has evolved and changed substantially from a starting point of deploying very specific and challenging but, to some extent, theoretically-based compositional techniques through to my current approach which is more spectrally-influenced and focuses on the utilization of physically recorded sounds from my urban environment as direct and indirect compositional source materials. 

I describe various means by which I have attempted to capture features of this society within the construction of musical works, whether by using contrasting strands of movement and stasis to reflect events and behaviours or by physically recording and manipulating actual urban sounds so that snapshots of my immediate environment play a direct part in shaping the music. Originality has remained important throughout the period of this work too. As such, I have tried to remain consistent in postulating a musical language that is ethereal in quality, perhaps reflecting both the vagueness of how events truly play out in current urban society and the sense of detachment and suspended reality I sometimes feel when relating and responding to a complex, unpredictable world; one I sometimes struggle to understand but nonetheless try, in an abstract sense, to comment on through my music.

The contents are divided into three distinct parts. Part One seeks to explain how and why I compose music and elaborates on the socio-political aspects. Part Two focuses on the forms, structures and techniques that are the foundation of my music and highlights those specific pieces which demonstrate important, frequently deployed features. Part Three is a series of commentaries on the individual compositions included in the portfolio.
title: Ecocritical Art in Times of Climate Change:
Tracing Ecological Relationships Between Humans and
Nonhumans Through the Hyperextension of Objects
Creators: name: Martin, Julia
Publisher: name: Goldsmiths, University of London
Year: 2015
Subjects: subject: art, eco-art, ecology, ecocriticism, ecological objects, hyperextension, hyperextended objects, environment, fieldwork, climate change, systemic thinking

description: In recent years, climate change has expanded from a scientific to a broadly cultural concern, fundamentally questioning ideas of nature, society, and ecology. This thesis looks at the contribution of eco-art to the discussions, which seems to lag behind current discourses in ecocriticism. An analysis of selected "climate change exhibitions" shows that, despite its intentions, much of eco-art keeps recreating the modernist Nature-Society dualism which ecocriticism sees as the main obstacle for ecological thinking. Meanwhile, ecology models developed in ecocriticism are also far from resolved. A close look at Bruno Latour's Political Ecology and Timothy Morton's Ecological Thought reveals for example a theoretical alignment of ecology and democracy, which misjudges the behavioural capacities of ecological agents in practical ecology. The critique of eco-art and ecocriticism leads to questions regarding their contradictory artistic and political agency in environmental discourses. To address these uncertainties, an ecocritical art is proposed, investigating the identified problems in eco-art: aesthetic distancing, unknown subject-object relationships, fixation on local environments, and misreadings of practical ecology. Following Donella Meadows' "systems thinking" approach, the thesis suggests focusing on the investigation of concrete ecological agents and their systemic behaviour. Rather than theorising relationships between "closed" objects, it introduces the idea of the "hyperextended object". Hyperextension describes the investigative expansion of an object into an ecological agent, unfolding it contextually according to its social, material, and energetic relationships. The practical part of the thesis develops an artistic methodology, which traces and shapes hyperextended objects through long-term fieldwork, participant observation, site specific performative actions, various documentary approaches, and their convergence in the exhibition. In two case studies exploring the (trans)regional infrastructures, sociopolitical ontologies, and ecological effects of two hydroelectricity projects in Iceland and Scotland, the process of hyperextension is shown to include the artist herself, as increasingly embedded ecological agent.
title: Enhancing coherent transport in a photonic network using controllable decoherence
Creators: name: Biggerstaff, Devon N.
name: Heilmann, René
name: Zecevik, Aidan A.
name: Gräfe, Markus
name: Broome, Matthew A.
name: Fedrizzi, Alessandro
name: Nolte, Stefan
name: Szameit, Alexander
name: White, Andrew G.
name: Kassal, Ivan
Publisher: name: Springer Nature
Year: 2025

description: Transport phenomena on a quantum scale appear in a variety of systems, ranging from photosynthetic complexes to engineered quantum devices. It has been predicted that the efficiency of coherent transport can be enhanced through dynamic interaction between the system and a noisy environment. We report an experimental simulation of environment-assisted coherent transport, using an engineered network of laser-written waveguides, with relative energies and inter-waveguide couplings tailored to yield the desired Hamiltonian. Controllable-strength decoherence is simulated by broadening the bandwidth of the input illumination, yielding a significant increase in transport efficiency relative to the narrowband case. We show integrated optics to be suitable for simulating specific target Hamiltonians as well as open quantum systems with controllable loss and decoherence.
sj-pdf-2-pmj-10.1177_02692163211043382 – Supplemental material for Unwelcome memento mori or best clinical practice? Community end of life anticipatory medication prescribing practice: A mixed methods observational study
Creators: name: Bowers, Ben
name: Pollock, Kristian
name: Barclay, Stephen
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 110308 Geriatrics and Gerontology
subject: FOS: Clinical medicine
subject: 111702 Aged Health Care
subject: FOS: Health sciences

description: Supplemental material, sj-pdf-2-pmj-10.1177_02692163211043382 for Unwelcome memento mori or best clinical practice? Community end of life anticipatory medication prescribing practice: A mixed methods observational study by Ben Bowers, Kristian Pollock and Stephen Barclay in Palliative Medicine
Additional file 5 of Sex-based differences in growth-related IGF1 signaling in response to PAPP-A2 deficiency: comparative effects of rhGH, rhIGF1 and rhPAPP-A2 treatments
Creators: name: Fernández-Arjona, María del Mar
name: Navarro, Juan Antonio
name: López-Gambero, Antonio Jesús
name: de Ceglia, Marialuisa
name: Rodríguez, Miguel
name: Rubio, Leticia
name: Rodríguez de Fonseca, Fernando
name: Barrios, Vicente
name: Chowen, Julie A.
name: Argente, Jesús
name: Rivera, Patricia
name: Suárez, Juan
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine

description: Supplementary Material 5
Development of Cell Models for Endogenous FBXO10 to Study its Role in Leukemia
Creators: name: Adhikari, Ritika
Publisher: name: University of Illinois Chicago
Year: 2025

description: This dissertation investigates the role of FBXO10, an F-box protein, in regulating mitochondrial homeostasis in leukemia. Through CRISPR/Cas9 gene editing, we developed cell models for endogenously tagged and auxin-inducible degradable FBXO10 to facilitate targeted, reversible protein degradation. This system enabled a thorough analysis of FBXO10's localization and interactions, overcoming challenges posed by limited antibodies for endogenous detection. Our study also targeted the C-terminal CAAX motif of FBXO10, crucial for prenylation and mitochondrial localization, creating a mutant clone to elucidate its role in mitochondrial targeting and function.
We demonstrate that FBXO10 regulates mitochondrial dynamics. Specifically, FBXO10 depletion alters mitochondrial morphology, suggesting its role in maintaining mitochondrial integrity in leukemia cells. Our findings provide insights into how FBXO10’s modulation of mitochondrial proteins may influence leukemia cell survival, presenting potential therapeutic strategies.
Our results underscore FBXO10’s significance in cellular proteostasis and mitochondrial regulation, positioning it as a candidate for targeted leukemia therapies. This work advances our understanding of FBXO10’s biological role, with implications for broader applications in mitochondrial and cancer research.
SMART TЕХNОLОGIYALАRI HАQIDА TUSHUNCHА
Creators: name: Mehriddinov, Mirjalol
name: Negmatova, Sevinch
Publisher: name: Zenodo
Year: 2025

description: SMART texnologiyalari – bu insonlarning kundalik hayotini soddalashtirish, samaradorlikni oshirish va vaqtni tejashga qaratilgan aqlli texnologiyalar tizimi. SMART tizimlar, asosan, turli qurilmalar va ilovalarni bir-biriga ulab, avtomatlashtirish va real vaqtda boshqaruv imkonini yaratadi. Masalan, SMART uylar, SMART transport tizimlari va SMART shaharlar. Bu texnologiyalar internet, sun'iy intellekt va IoT (Internet of Things) kabi sohalarni o'z ichiga oladi. SMART texnologiyalari kelajakda odamlarning hayotini sezilarli darajada o'zgartirishi kutilmoqda.
sj-pdf-1-jfi-10.1177_0192513X211041985 – Supplemental Material for Effects of Migration on the Language and Literacy Practices of Turkish Parents in England
Creators: name: Kolancali, Pinar
name: Melhuish, Edward
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 160301 Family and Household Studies
subject: FOS: Sociology
subject: Sociology

description: Supplemental Material, sj-pdf-1-jfi-10.1177_0192513X211041985 for Effects of Migration on the Language and Literacy Practices of Turkish Parents in England by Pinar Kolancali and Edward Melhuish in Journal of Family Issues
Additional file 6 of Sex-based differences in growth-related IGF1 signaling in response to PAPP-A2 deficiency: comparative effects of rhGH, rhIGF1 and rhPAPP-A2 treatments
Creators: name: Fernández-Arjona, María del Mar
name: Navarro, Juan Antonio
name: López-Gambero, Antonio Jesús
name: de Ceglia, Marialuisa
name: Rodríguez, Miguel
name: Rubio, Leticia
name: Rodríguez de Fonseca, Fernando
name: Barrios, Vicente
name: Chowen, Julie A.
name: Argente, Jesús
name: Rivera, Patricia
name: Suárez, Juan
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine

description: Supplementary Material 6
title: Coréopsis :
title: Principes directeurs pour la conduite de l’examen de la distinction, de l’homogénéité et de la stabilité.
titleType: Subtitle
Creators: name: International Union For The Protection Of New Varieties Of Plants,
Publisher: name: International Union for the Protection of New Varieties of Plants,
Year: 0
Subjects: Plants
New Varieties of Plants
Coreopsis
Tickseed

description: Ces principes directeurs (“principes directeurs d’examen”) visent à approfondir les principes énoncés dans l’introduction générale (document TG/1/3) et dans les documents TGP qui s’y rapportent afin de donner des indications concrètes détaillées pour l’harmonisation de l’examen de la distinction, de l’homogénéité et de la stabilité (DHS) et, en particulier, à identifier des caractères convenant à l’examen DHS et à la production de descriptions variétales harmonisées.
Förderung des FAIRen Datenmanagements in der Nutztierforschung: Auf dem Weg zu standardisierten Metadaten
Creators: name: Fischer, Sarah
name: Holetschek, Jörg
name: Melzer, Nina
Publisher: name: Zenodo
Year: 2024

description: Die Nutztierforschung befindet sich auf dem Weg zu einem FAIRen (Findable-Auffindbarkeit, Accessible-Zugänglichkeit, Interoperable-Interoperabilität, Reusable-Wiederverwendbarkeit) Datenmanagement. Dies ist ebenfalls für das 3R-Prinzip (replace-vermeiden, reduce-verringern und refine-verbessern) für Tierversuche relevant. Trotz zunehmenden Bewusstseins für die Relevanz der Wiederverwendung von Forschungsdaten und der Einhaltung der FAIR-Prinzipien fehlt es noch immer an geeigneten und umfassenden Metadatenstandards für diese Daten bei Nutztieren. Die aktuell bereitgestellten Metadaten sind in der Regel nicht sehr umfangreich und konzentrieren sich vorrangig auf Publikationsdetails und weniger auf die eigentlichen Merkmale der Daten. Im Rahmen vom EU-projekt PIGWEB und nationalem Projekt „Innovation für gesunde und „glückliche“ Kühe (IGG) - Milchställe der Zukunft“ sowie in Zusammenarbeit mit NFDI4Biodiversity, ein Konsortium der nationalen Forschungsdateninfrastruktur, haben wir etablierte Standards auf ihre Eignung für Schweinedaten und Rinderdaten hin untersucht und bewertet. Hierbei erwies sich der Access to Biological Collections Data (ABCD) Standard, entwickelt vom Botanischen Garten in Berlin, als ein vielversprechender Kandidat für die Erstellung von standardisierten Metadaten. Wir präsentieren den aktuellen Stand unserer Arbeit, welcher als ein Startpunkt angesehen werden kann, um zu zeigen, wie umfangreichere standardisierte Metadaten in einer Community erfasst werden können. Ferner könnte der ABCD Standard als Grundlage für andere Nutztierarten dienen. Generell würde die Anwendung eines umfassenderen Standards auf erhobene Daten dazu beitragen, dass die Daten im Hinblick auf Zugänglichkeit, Wiederverwendbarkeit und Interoperabilität FAIRer werden.
🚀Time to launch: Making the "Standard Template for the Efficient Development of Research Software" accessible
Creators: name: Fritzsch, Bernadette
name: Haupt, Carina
name: Nielebock, Sebastian
name: Rumpe, Bernhard
name: Struck, Alexander
name: Ulusoy, Inga
Publisher: name: Zenodo
Year: 2025

description: As research software is becoming increasingly fundamental in almost all scientific domains, its development and maintenance is of significant importance for scientists. Currently, scientists often lack the profound knowledge and tools to develop and maintain this software throughout its often long lasting life cycle. To promote high-quality software, adequate support, and appropriate recognition of research software engineering (RSE) as academic achievement, the deRSE e. V. and GI e. V. developed a template guideline as a basis for discussion and adoption. This template serves as a foundation for adopting best RSE practices by German universities and research institutions, and providing adequate support to researchers and research software engineers. At the time of writing the template is in the approval process. The goals of the guidelines are (1) ensuring support and investments in RSE in Germany, and thus improving research software in several aspects; (2) providing a foundation for RSE recognition and RSE contributions as academic achievements.It is now time for universities and research institutions to adopt and adapt these variant-rich guidelines, and for the community to put them into practice. In this session, we strive for strategies on (A) how to incentivize the adoption at the institutional level, and (B) how to make the guidelines accessible to all involved stakeholders, including researchers and research software engineers developing the research software.The BoF session will start with an introduction to these guidelines and other similar efforts. We will proceed with group work in breakout sessions on incentives (A) and accessibility (B). The goal is to develop two dissemination roadmaps, (A) top-down (at the institutional level) and (B) bottom-up (at the work level). The session will also discuss tooling like an interactive web page for adapting the variant-rich template to institution-specific needs (A); a visual representation of specific chapters in terms of decision trees (A/B); a carpentries-style short introduction to the guidelines (B); or a tool that provides feedback if your research software adheres to the guidelines (B). As such, the BoF session is meant to gather input and supporters for putting the guidelines into practice in a collaborative effort. Feedback mechanisms on the guidelines after they have been incorporated at research institutions will be discussed at the end of the session.
Additional file 7 of Sex-based differences in growth-related IGF1 signaling in response to PAPP-A2 deficiency: comparative effects of rhGH, rhIGF1 and rhPAPP-A2 treatments
Creators: name: Fernández-Arjona, María del Mar
name: Navarro, Juan Antonio
name: López-Gambero, Antonio Jesús
name: de Ceglia, Marialuisa
name: Rodríguez, Miguel
name: Rubio, Leticia
name: Rodríguez de Fonseca, Fernando
name: Barrios, Vicente
name: Chowen, Julie A.
name: Argente, Jesús
name: Rivera, Patricia
name: Suárez, Juan
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine

description: Supplementary Material 7
A research software engineering department at a German university: Four years and counting
Creators: name: Keegan, Liam
name: Kempf, Dominic
name: Ulusoy, Inga
Publisher: name: Zenodo
Year: 2025

description: The Scientific Software Center (SSC), established in fall 2020 at the Interdisciplinary Centre for Scientific Computing of the University of Heidelberg, provides institutional support to researchers of all faculties in software development and software engineering best practices. The SSC promotes reproducibility and sustainability of research software. The support offered by the SSC is based on the three pillars “Development and Sustainability”, “Teaching and Consultation”, and “Outreach and Communication”1.In this contribution, we want to share success stories and roadblocks of the first four years of the SSC. The presentation will touch upon the following main aspects: (1) Aspects related to research software engineering; (2) management of RSE groups; (3) administrative aspects; (4) process and people; (5) training and transfer. The SSC employs predominantly “generalist” but also “embedded” research software engineers, where generalists work on RSE projects of all disciplines, and embedded research software engineers are focused on RSE projects in their home domain. Often, the research software engineers work on multiple projects, making effective project and time management essential. Being located at a German university brings its own additional administrative challenges related to the recognition of RSE as academic discipline and academic work contracts. Establishing processes and communication channels is an ongoing effort at the SSC, with the aim to manage time and quality effectively and transparently, while considering mindset, ownership, mental health and personal growth. Transporting the ideals of software engineering best practices into research groups through training and collaboration is another challenge, that on the one hand is met with great enthusiasm, on the other hand with reluctance to deviate from established routines. We will conclude with an outlook and a summary of (anticipated) differences of an RSE group with “traditional” research groups at academic institutions.

1 Keegan, L., Kempf, D., Ulusoy, I. (2024). Scientific Software Center at Heidelberg University: White Paper (v2.0). Zenodo. [https://doi.org/10.5281/zenodo.10867903
Light Signaling and Allostery Mechanisms of a Dual-sensor Photoreceptor
Creators: name: Tom, Irin Pottanani
Publisher: name: University of Illinois Chicago
Year: 2025

description: PPHK (phosphorylation-responsive photosensitive histidine kinase) from Leptolyngbya sp. JSC-1 is a dual sensor kinase that integrates upstream phosphorylation and red-light signals via a molecular logic "OR". As a member of the phytochrome superfamily, PPHK undergoes reversible photoconversion between green light-absorbing (Pg) and red light-absorbing (Pr) states. Its modular architecture, with a dimeric scaffold typical of sensory histidine kinases, makes it an excellent model for studying allosteric activation and signal integration. Using cryoelectron microscopy (cryoEM), I determined the full-length structure of PPHK at near-atomic resolution in different signaling states, providing key insights into the structural basis of allosteric regulation and signal integration in modular signaling proteins. This dissertation uncovers how photoreceptors and sensory histidine kinases process environmental signals, offering new perspectives on signal transduction mechanisms.
Supplemental Material, sj-pdf-1-jgp-10.1177_08919887211044747 - Statins, Enzyme CoQ10 Supplement Use, and Cognitive Functioning
Creators: name: Collin, Brian G.
name: Raju, Dheeraj
name: Katsikas, Steven
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 110308 Geriatrics and Gerontology
subject: FOS: Clinical medicine
subject: 110904 Neurology and Neuromuscular Diseases
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: Neuroscience

description: Supplemental Material, sj-pdf-1-jgp-10.1177_08919887211044747 for Statins, Enzyme CoQ10 Supplement Use, and Cognitive Functioning by Brian G. Collin, Dheeraj Raju and Steven Katsikas in Journal of Geriatric Psychiatry and Neurology
Supplemental Material, sj-pdf-1-jcn-10.1177_08830738211000977 - Acquisition of Developmental Milestones in Hypomyelination With Atrophy of the Basal Ganglia and Cerebellum and Other TUBB4A-Related Leukoencephalopathy
Creators: name: Gavazzi, Francesco
name: Charsar, Brittany A.
name: Williams, Catherine
name: Shults, Justine
name: Alves, Cesar A.
name: Adang, Laura
name: Vanderver, Adeline
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: 111403 Paediatrics
subject: Neuroscience

description: Supplemental Material, sj-pdf-1-jcn-10.1177_08830738211000977 for Acquisition of Developmental Milestones in Hypomyelination With Atrophy of the Basal Ganglia and Cerebellum and Other TUBB4A-Related Leukoencephalopathy by Francesco Gavazzi, Brittany A. Charsar, Catherine Williams, Justine Shults, Cesar A. Alves, Laura Adang and Adeline Vanderver in Journal of Child Neurology
sj-docx-1-tej-10.1177_20417314211047100 – Supplemental material for Early osteoimmunomodulatory effects of magnesium–calcium–zinc alloys
Creators: name: Rahmati, Maryam
name: Stötzel, Sabine
name: Khassawna, Thaqif El
name: Iskhahova, Kamila
name: Florian Wieland, DC
name: Zeller Plumhoff, Berit
name: Haugen, Håvard Jostein
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 110599 Dentistry not elsewhere classified
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Supplemental material, sj-docx-1-tej-10.1177_20417314211047100 for Early osteoimmunomodulatory effects of magnesium–calcium–zinc alloys by Maryam Rahmati, Sabine Stötzel, Thaqif El Khassawna, Kamila Iskhahova, DC Florian Wieland, Berit Zeller Plumhoff and Håvard Jostein Haugen in Journal of Tissue Engineering
THE EFFECT OF INTERACTIVE MANUFACTURING WORK INSTRUCTIONS AS A TRAINING TOOL FOR ASSEMBLY TASKS
Creators: name: Yun, Soho
Publisher: name: Purdue University Graduate School
Year: 2021
Subjects: Other engineering not elsewhere classified

description: In the current manufacturing industry, static work instructions (WI) are still widely used for manufacturing assembly training and they lack the dynamic information that interactive work instructions can offer. Augmented Reality (AR) training systems are receiving increasing interest in the scientific community, but there is a limited amount of research done on the long-term effect of the AR training systems compared with static training systems. This thesis study was done to investigate if interactive WIs such as AR WIs and 3D PDF WIs have an advantage on training efficiency and knowledge sustainability compared to static paper WIs. Within an experiment, it was observed that there are no differences between the three training methods when it comes to training efficiency, but AR WI proved to be more effective in sustaining the user’s long-term recall precision than paper WI.
Additional file 8 of Sex-based differences in growth-related IGF1 signaling in response to PAPP-A2 deficiency: comparative effects of rhGH, rhIGF1 and rhPAPP-A2 treatments
Creators: name: Fernández-Arjona, María del Mar
name: Navarro, Juan Antonio
name: López-Gambero, Antonio Jesús
name: de Ceglia, Marialuisa
name: Rodríguez, Miguel
name: Rubio, Leticia
name: Rodríguez de Fonseca, Fernando
name: Barrios, Vicente
name: Chowen, Julie A.
name: Argente, Jesús
name: Rivera, Patricia
name: Suárez, Juan
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine

description: Supplementary Material 8
title: Botched Taxidermy: New Animal Bodies in Contemporary Art
Creators: name: Aloi, Giovanni
Publisher: name: Goldsmiths, University of London
Year: 2015
Subjects: subject: Taxidermy, Animal Studies, Posthumanism, Natural History, Foucault, Contemporary Art

description: The past fifteen years have seen an unexpected resurgence of taxidermy in popular culture — from hip restaurants and bars to interior design and movies. However this phenomenon has been counterposed by the simultaneous dismantling of dioramas in natural history museums in light of a postcolonial critical reappraisal of the practice, predominantly contextualizing taxidermy as the negative by-product of Victorian-era colonization. It is clear that utopian positivistic visions of that time and the imperialist economies of power, subjugation, and wealth indeed contributed to the emergence of taxidermy. However, between this negative positioning of its historical past and the renewed ‘hype’ it has found in popular culture, lies the emergence of taxidermy in the contemporary exhibition space. 

This thesis focuses on the latter phenomenon, questioning the problematic and uncomfortable encounters with manipulated animal bodies that seemingly return, along with our shared histories, to haunt us. Taking Steve Baker’s landmark theorization of the postmodern animal as a starting point, and more specifically concentrating on the ‘botched taxidermy’ strand of his thought, this thesis focuses on a selection of works by contemporary artists Gerard Richter, Roni Horn, Jordan Baseman, and Steve Bishop. Situated across the disciplines of animal studies, Foucault studies, and visual cultures, this inquiry focuses on how the differential specificities of mediums such as photography, painting, and sculpture in some instances provide a productive opportunity to rethink human/animal relations through art. 

To support this analysis, and departing from the frame offered by Baker, this thesis also provides a new critique of Foucault’s fragmentary work on painting and photography. It thus expands his unfinished project to adapt genealogical and biopolitical frameworks to visual analysis. More broadly, this thesis grounds current posthumanist debates in the definitive movements of contemporary art.
sj-docx-1-spq-10.1177_01902725211042313 – Supplemental material for When Does Status Transfer between People? A Crowdsourced Experiment on the Scope of Status by Association
Creators: name: Overton, Jon
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: Sociology
subject: FOS: Sociology

description: Supplemental material, sj-docx-1-spq-10.1177_01902725211042313 for When Does Status Transfer between People? A Crowdsourced Experiment on the Scope of Status by Association by Jon Overton in Social Psychology Quarterly