cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Thermodynamical description of stationary, asymptotically flat solutions with conical singularities
Creators: name: Herdeiro, Carlos
name: Radu, Eugen
name: Rebelo, Carmen
Publisher: name: arXiv
Year: 2010
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We examine the thermodynamical properties of a number of asymptotically flat, stationary (but not static) solutions having conical singularities, with both connected and non-connected event horizons, using the thermodynamical description recently proposed in arXiv:0912.3386 [gr-qc]. The examples considered are the double-Kerr solution, the black ring rotating in either S^2 or S^1 and the black Saturn, where the balance condition is not imposed for the latter two solutions. We show that not only the Bekenstein-Hawking area law is recovered from the thermodynamical description but also the thermodynamical angular momentum is the ADM angular momentum. We also analyse the thermodynamical stability and show that, for all these solutions, either the isothermal moment of inertia or the specific heat at constant angular momentum is negative, at any point in parameter space. Therefore, all these solutions are thermodynamically unstable in the grand canonical ensemble.
description: 19 pages, 12 figures
Additional file 1 of Establishing a primary care audit and feedback implementation laboratory: a consensus study
Creators: name: Alderson, Sarah L.
name: Bald, Alexander
name: Carder, Paul
name: Farrin, Amanda
name: Foy, Robbie
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 1. CROP Consensus Round 1
Additional file 1 of Inhibition of PI3 kinase isoform p110α suppresses neuroblastoma growth and induces the reduction of Anaplastic Lymphoma Kinase
Creators: name: Guo, Yue
name: Guo, Donghao
name: Zhang, Shaoting
name: Zhang, Yuan
name: He, Xiaoyan
name: Jiang, Xiaohua
name: Chan, Andrew Man-Lok
name: Zou, Lin
name: Sun, Jianmin
name: Zhao, Hui
Publisher: name: figshare
Year: 2023
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Additional file 1: Fig. S1–S9. Additional figures, Table S1. siRNA sequences for knockdown assays, and Table S2. primers for qPCR.
Credo in unum deum : situating Bach's B-minor Mass within a Dresden context
Creators: name: Bevaart, Joanna Marie
Publisher: name: University of British Columbia
Year: 2023

description: The purpose of Bach’s completion of his B-minor Mass has, to date, not been fully understood. Although the work was first presented to the Saxon elector as a Kyrie-Gloria missa in 1733, the fact that Bach, a staunch Lutheran, included the remaining movements of the mass Ordinary to comprise a full “Catholic” mass in 1748/49 is most intriguing. Many plausible and valid viewpoints have been hypothesized, mainly from the perspective of Bach’s own musical tendencies, interests, and circumstances. My research, however, addresses this problem from a wider, contextual point of view, seeking to find answers through contemporary mass writing at the Dresden court. Dresden’s importance is clear given its early connections to the mass, and the fact that Bach cultivated significant ties to the city for the remaining years of his life. Since the Credo movement was Bach’s last addition to complete the full mass, and is laden with structural complexity, prominent compositional choices, and interesting theological implications, it will be the focus of this study. To do so, I will explore a selection of extant Dresden Credo movements written within the few decades prior to Bach’s own Credo. The late addition of Bach’s Credo movement would have allowed him ample time to familiarize himself with these earlier, parallel versions, making the Credo movement an excellent choice for determining a possible Dresden influence. By uncovering the degree to which the Dresden Credo compositions share these musical traits with Bach’s, his purpose for writing the full mass can be better understood. To further validate these musical findings, I will also address the cultural and musical context of the city of Dresden, the mass genre more generally, and Bach’s own connections to the city. I will show how, despite Bach’s personal preoccupation with theological meaning and the stile antico, his awareness of the Dresden masses and a possible practical intention for his mass is revealed in his own Credo movement.
Additional file 2 of Establishing a primary care audit and feedback implementation laboratory: a consensus study
Creators: name: Alderson, Sarah L.
name: Bald, Alexander
name: Carder, Paul
name: Farrin, Amanda
name: Foy, Robbie
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 2. Medicines Optimisation Lead’s (n = 5) current prescribing feedback practice
An Off-Axis Relativistic Jet Model for the Type Ic supernova SN 2007gr
Creators: name: Xu, M.
name: Nagataki, S.
name: Huang, Y. F.
Publisher: name: arXiv
Year: 2011
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: We propose an off-axis relativistic jet model for the Type Ic supernova SN 2007gr. Most of the energy ($\sim2\times10^{51}$ erg) in the explosion is contained in non-relativistic ejecta which produces the supernova. The optical emission is coming from the decay process of $\rm ^{56}Ni$ synthesized in the bulk SN ejecta. Only very little energy ($\sim10^{48}$ erg) is contained in the relativistic jet with initial velocity about 0.94 times the speed of light. The radio and X-ray emission comes from this relativistic jet. With some typical parameters of a Wolf-Rayet star (progenitor of Type Ic SN), i.e., the mass loss rate $\dot{M}=1.0 \times10^{-5} M_{\odot} \rm yr^{-1}$ and the wind velocity $v_{\rm w}=1.5\times10^{3} \rm km s^{-1}$ together with an observing angle of $θ_{\rm obs} = 63.3^{\circ}$, we can obtain the multiband light curves that fit the observations well. All the observed data are consistent with our model. Thus we conclude that SN 2007gr contains a weak relativistic jet and we are observing the jet from off-axis.
description: 22 pages, 4 figures, accepted for publication in ApJ
Additional file 1 of Novel ethanol production using biomass preprocessing to increase ethanol yield and reduce overall costs
Creators: name: Pascoli, Danielle Uchimura
name: Suko, Azra
name: Gustafson, Rick
name: Gough, Heidi L.
name: Bura, Renata
Publisher: name: figshare
Year: 2021
Subjects: subject: Neuroscience
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 1. Table S1 Chemical composition of white wood and bark fractions of WTC poplar samples; Table S2 Elemental composition of white wood and bark fractions of WTC samples; Table S3 Yields of sugars, lignin, and ash (kg/tonne) of solid fraction after steam pretreatment; Table S4 Monomeric sugar yield and recovery after steam pretreatment and enzymatic hydrolysis; Table S5 Initial concentration of sugars (glucose and xylose) and maximum ethanol concentration during fermentation; Table S6 Individual equipment prices (based on NREL reports and adjusted to in-house size); Table 7 Individual price quotations used for calculating operating costs.
Additional file 2 of The immune modulatory effects of mitochondrial transplantation on cecal slurry model in rat
Creators: name: Hwang, Jung Wook
name: Lee, Min Ji
name: Chung, Tae Nyoung
name: Lee, Han A. Reum
name: Lee, Jung Ho
name: Choi, Seo Yoon
name: Park, Ye Jin
name: Kim, Chul Hee
name: Isom Jin
name: Kim, Seong Hoon
name: Hyo-Bum Kwak
name: Jun-Won Heo
name: Kwangmin Na
name: Sangchun Choi
name: Choi, Yong-Soo
name: Kim, Kyuseok
Publisher: name: figshare
Year: 2021
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 2. Characterization of isolated mitochondria from L6 cells and UC-MSCs.
Hadamard grade of power series
Creators: name: Allouche, J. -P.
name: France, M. Mendès
Publisher: name: arXiv
Year: 2011
Subjects: subject: Number Theory (math.NT)
subject: FOS: Mathematics
subject: 11R58, 11D88, 13F25, 11B85

description: The Hadamard product of two power series $\sum a_n z^n$ and $\sum b_n z^n$ is the power series $\sum a_n b_n z^n$. We define the (Hadamard) grade of a power series $A$ to be the least number (finite or infinite) of algebraic power series, the Hadamard product of which equals $A$. We study and discuss this notion.
Additional file 3 of Establishing a primary care audit and feedback implementation laboratory: a consensus study
Creators: name: Alderson, Sarah L.
name: Bald, Alexander
name: Carder, Paul
name: Farrin, Amanda
name: Foy, Robbie
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 3. Results from the first round of consensus survey. Results that changed in round 2 are in italics and bold
Additional file 1 of The immune modulatory effects of mitochondrial transplantation on cecal slurry model in rat
Creators: name: Hwang, Jung Wook
name: Lee, Min Ji
name: Chung, Tae Nyoung
name: Lee, Han A. Reum
name: Lee, Jung Ho
name: Choi, Seo Yoon
name: Park, Ye Jin
name: Kim, Chul Hee
name: Isom Jin
name: Kim, Seong Hoon
name: Hyo-Bum Kwak
name: Jun-Won Heo
name: Kwangmin Na
name: Sangchun Choi
name: Choi, Yong-Soo
name: Kim, Kyuseok
Publisher: name: figshare
Year: 2021
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 1. Respiratory control rates of mitochondria in the rat sepsis model. Respiratory control rates were measured in spleen, muscle, liver and kidney tissues both before and after induction of sepsis.
Additional file 1 of Referral assessment and patient waiting time decisions in specialized mental healthcare: an exploratory study of early routine collection of PROM (LOVePROM)
Creators: name: Yang, Fan
name: Wangen, Knut Reidar
name: Victor, Mattias
name: Solbakken, Ole André
name: Holman, Per Arne
Publisher: name: figshare
Year: 2023
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Mental Health
subject: Hematology

description: Additional file 1: Table 1. Trigger levels of the Risk-to-others and Risk-to-self, based onquestions from the CORE-OM questionnaire. Table 2. The distribution of patients by CORE-OM categories.
title: Synthesis and study of potential fluorescent sensors and steps towards understanding a new class of SSAs
Creators: name: Ozturk, Sena
name: University Of Kent
Publisher: name: University of Kent
Year: 2022

description: This thesis reports the synthesis of four receptors designed to be potential fluorescent sensors for anions. The binding of these receptors to a series of anions were studied in the organic solvent DMSO; following this, a series of studies on the fluorimeter were conducted to assess their sensing potential. This thesis also reports the study of two SSAs and their neutral counterparts previously synthesised by Tjorge Neumann (University of Kiel). The self-associative properties of the four compounds were studied in the solution state to discern any structure specific activity, and assess their potential as a new class of SSAs.
EMBRACE: explications and examples
Creators: name: Zyrianova, Mariia
Publisher: name: Zenodo
Year: 2023

description: In the present paper we provide additional details and explanations to the evaluation process performed as part of the research described in the article EMBRACE: Evaluation and Modifications for Boosting RACE. This paper is synchronised with the main article in structure and content, and the titles of the sections are kept the same to facilitate the search for corresponding materials.
The scalar box integral and the Mellin - Barnes representation
Creators: name: Valtancoli, Paolo
Publisher: name: arXiv
Year: 2011
Subjects: subject: Mathematical Physics (math-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We solve exactly the scalar box integral using the Mellin-Barnes representation. Firstly we recognize the hypergeometric functions resumming the series coming from the scalar integrals, then we perform an analytic continuation before applying the Laurent expansion in^2 = (d !' 4)=2 of the result.
description: 13 pages, no figures
Additional file 4 of The immune modulatory effects of mitochondrial transplantation on cecal slurry model in rat
Creators: name: Hwang, Jung Wook
name: Lee, Min Ji
name: Chung, Tae Nyoung
name: Lee, Han A. Reum
name: Lee, Jung Ho
name: Choi, Seo Yoon
name: Park, Ye Jin
name: Kim, Chul Hee
name: Isom Jin
name: Kim, Seong Hoon
name: Hyo-Bum Kwak
name: Jun-Won Heo
name: Kwangmin Na
name: Sangchun Choi
name: Choi, Yong-Soo
name: Kim, Kyuseok
Publisher: name: figshare
Year: 2021
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 4. Oxygen consumption trace in organ of cecal slurry model in rat.
Additional file 6 of The immune modulatory effects of mitochondrial transplantation on cecal slurry model in rat
Creators: name: Hwang, Jung Wook
name: Lee, Min Ji
name: Chung, Tae Nyoung
name: Lee, Han A. Reum
name: Lee, Jung Ho
name: Choi, Seo Yoon
name: Park, Ye Jin
name: Kim, Chul Hee
name: Isom Jin
name: Kim, Seong Hoon
name: Hyo-Bum Kwak
name: Jun-Won Heo
name: Kwangmin Na
name: Sangchun Choi
name: Choi, Yong-Soo
name: Kim, Kyuseok
Publisher: name: figshare
Year: 2021
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 6. Proinflammatory cytokine expression in in vitro model of hyperinflammation and immunosuppression with ETC inhibitors.
Exact solutions for a type of electron pairing model with spin-orbit interactions and Zeeman coupling
Creators: name: Liu, Jia
name: Han, Qiang
name: Shao, L. B.
name: Wang, Z. D.
Publisher: name: arXiv
Year: 2011
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: A type of electron pairing model with spin-orbit interactions or Zeeman coupling is solved exactly in the framework of Richardson ansatz. Based on the exact solutions for the case with spin-orbit interactions, it is shown rigorously that the pairing order parameter has always the $p+ip$-wave symmetry regardless of the strength of pairing interaction, justifying an important conclusion obtained by the mean field theory. Analytical results are derived for two simple systems with respectively spin-orbit interactions and Zeeman coupling.
description: 4 pages, minor corrections made. This latest version was submitted to Phys. Rev. Lett
Covid-19 Modeling and Control via Policy Interventions
Creators: name: Mehta, Swapneel
name: Kasmanoff, Noah
Publisher: name: Zenodo
Year: 2021
Subjects: COVID-19
probabilistic programming
policy interventions
statistical inference
Hamiltonian Monte Carlo
epidemiology
compartmental model

description: We demonstrate an approach to replicate and forecast the spread of the SARS-CoV-2 (COVID-19) pandemic using the toolkit of probabilistic programming languages (PPLs).
Multifunctionality of community gardens and food forests in Vancouver, Canada
Creators: name: Park, Hyeone
Publisher: name: University of British Columbia
Year: 2023

description: Urban food production systems such as community gardens and food forests are being promoted for their ability to provide multiple benefits, including food security, social cohesion, connection to nature, and climate change adaptation. Yet it is unclear whether and how people experience multiple benefits, or what factors are associated with higher levels of multifunctionality and different ecosystem services. In addition, while food forests are burgeoning in cities, there is still inconsistency in what constitutes urban food forestry in the scientific literature. To address these gaps, I first conducted a scooping review to examine ways in which the biological and functional characteristics of urban food production systems that involve trees in Northern America and Europe are described in the peer-reviewed literature. Secondly, I investigated the trade-offs and synergies between perceived provisioning and cultural ecosystem services that are valued by community gardeners in Vancouver, Canada. Finally, I identified bundles of provisioning, cultural, and regulating ES that are associated with similar biophysical and social characteristics of community gardens in Vancouver. To do so, I conducted a cross-sectional survey of 366 gardeners from 50 sites, 26 structured interviews with garden representatives, land use mapping, and tree inventory of 1,445 woody plants. The results of my research revealed that the current definition of “urban food forestry” includes a range of treed food systems with or without herbaceous plants that can provide multiple services. In Vancouver, community gardeners experience synergies between cultural services, and even between food and cultural services, with few perceived trade-offs. Lastly, while forest-like, large food forests with both individual plots and communal space for growing food seem to be the most multifunctional, small gardens may play an important role in promoting a sense of belonging and food sharing. My findings suggest that multifunctionality could be achieved in urban food production systems but requires strategic design (e.g., providing sufficient space for trees), management (e.g., a mix of individual and collective), and support of gardens (e.g., volunteers, technical assistance, resources). Moreover, different types of community gardens should be considered in order to best fit local contexts and meet different needs of communities.
MOESM1 of Does Bangkok have a central role in the dengue dynamics of Thailand?
Creators: name: Xu, Zhiwei
name: Bambrick, Hilary
name: Pongsumpun, Puntani
name: Ming Tang, I.
name: Yakob, Laith
name: Devine, Gregor
name: Frentiu, Francesca
name: Williams, Gail
name: Hu, Wenbiao
Publisher: name: figshare
Year: 2020
Subjects: subject: Molecular Biology
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Figure S1. Locations of the selected 716 districts. Figure S2. a Seasonality of dengue in different provinces (listed by latitude). b Dengue peak month in different provinces. Figure S3. The original spatial pattern of annual dengue incidence rate in the 716 districts. Figure S4. aâ€“h Association between dengue in Nakhon Ratchasima and dengue in other Thai provinces.
Hidden Conformal Symmetry of the Reissner-Nordstrøm Black Holes
Creators: name: Chen, Chiang-Mei
name: Sun, Jia-Rui
Publisher: name: arXiv
Year: 2010
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Motivated by recent progresses in the holographic descriptions of the Kerr and Reissner-Nordstrøm (RN) black holes, we explore the hidden conformal symmetry of nonextremal uplifted 5D RN black hole by studying the near horizon wave equation of a massless scalar field propagating in this background. Similar to the Kerr black hole case, this hidden symmetry is broken by the periodicity of the associated angle coordinate in the background geometry, but the results somehow testify the dual CFT description of the nonextremal RN black holes. The duality is further supported by matching of the entropies and absorption cross sections calculated from both CFT and gravity sides.
description: 14 pages, no figure
Additional file 3 of The immune modulatory effects of mitochondrial transplantation on cecal slurry model in rat
Creators: name: Hwang, Jung Wook
name: Lee, Min Ji
name: Chung, Tae Nyoung
name: Lee, Han A. Reum
name: Lee, Jung Ho
name: Choi, Seo Yoon
name: Park, Ye Jin
name: Kim, Chul Hee
name: Isom Jin
name: Kim, Seong Hoon
name: Hyo-Bum Kwak
name: Jun-Won Heo
name: Kwangmin Na
name: Sangchun Choi
name: Choi, Yong-Soo
name: Kim, Kyuseok
Publisher: name: figshare
Year: 2021
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 3. Distributions of transplanted mitochondria in septic spleens.
Chemotion in Teaching Integration of an ELN into a practical lab course
Creators: name: Herres-Pawlis, Sonja
Publisher: name: Zenodo
Year: 2021
Subjects: Electronic Laboratory Notebook
Teaching
Student Lab
Research Data Management

description: Am 02.12.2021 fand im Rahmen der Veranstaltungsreihe NFDI4Ing-Forum ein Workshop zur Nutzung elektronischer Laborbücher in der Lehre statt. Dieser dort gehaltene Vortrag beschäftigt sich mit dem Einsatz des elektronischen Laborbuchs Chemotion in Praktika im Studiengang Chemie an der RWTH Aachen. Die weiteren Vorträge der Veranstaltung werden getrennt hochgeladen und mit dem Datensatz der Ergebnissammlung verknüpft.
On the codimension-three conjecture
Creators: name: Kashiwara, Masaki
name: Vilonen, Kari
Publisher: name: arXiv
Year: 2010
Subjects: subject: Algebraic Geometry (math.AG)
subject: Complex Variables (math.CV)
subject: FOS: Mathematics
subject: 14F05, 32W25

description: In this note we sketch a proof of a fundamental conjecture, the codimension-three conjecture, for microdifferential holonomic systems with regular singularities. It states that any regular holonomic E-module extends beyond a codimension-three analytic subset.
description: few small texnical changes
Code comment generation by incorporating pre-defined application programming interface documentation
Creators: name: Shahbazi, Ramin
Publisher: name: University of British Columbia
Year: 2023

description: Code comments are significantly helpful in comprehending software programs and, therefore, saving a lot of time and energy in software maintenance. However, the comments are mostly outdated or missed, specially in complex software projects. As a result, several automatic comment generation models are developed as a solution. These models aim to automatically predict comments in the natural language given a code snippet. Recently, several studies investigate the effect of integrating external knowledge on the quality of generated comments. In this work, we propose a solution, namely APIContext2Com, to improve the effectiveness of generated comments by incorporating the pre-defined Application Programming Interface (API) context. The API context includes the definition and description of the pre-defined APIs used within the code snippets. Since the API information expresses the functionality of a code snippet, it can be helpful to better generate the code summary. We introduce a seq-2-seq encoder-decoder neural network model with different sets of multiple encoders to effectively transform distinct inputs into target comments. A ranking mechanism is also developed to exclude less relevant APIs, so that we can filter out some unrelated knowledge to the model. We evaluate the proposed approach on large-scale Java dataset, containing over 130,000 records, and the experimental findings reveal that the proposed model significantly outperforms the competitive baselines. Compared to the best baseline, Rencos, the proposed approach improves BLEU1, BLEU2, BLEU3, BLEU4, METEOR, ROUGE-L scores by 1.88 (8.24 %), 2.16 (17.58 %), 1.38 (18.3 %), 0.73 (14.17 %), 1.58 (14.98 %) and 1.9 (6.92 %) respectively.
On the number of maximal independent sets in a graph
Creators: name: Wood, David R.
Publisher: name: arXiv
Year: 2011
Subjects: subject: Combinatorics (math.CO)
subject: Discrete Mathematics (cs.DM)
subject: FOS: Mathematics
subject: FOS: Computer and information sciences

description: Miller and Muller (1960) and independently Moon and Moser (1965) determined the maximum number of maximal independent sets in an $n$-vertex graph. We give a new and simple proof of this result.
Additional file 7 of The immune modulatory effects of mitochondrial transplantation on cecal slurry model in rat
Creators: name: Hwang, Jung Wook
name: Lee, Min Ji
name: Chung, Tae Nyoung
name: Lee, Han A. Reum
name: Lee, Jung Ho
name: Choi, Seo Yoon
name: Park, Ye Jin
name: Kim, Chul Hee
name: Isom Jin
name: Kim, Seong Hoon
name: Hyo-Bum Kwak
name: Jun-Won Heo
name: Kwangmin Na
name: Sangchun Choi
name: Choi, Yong-Soo
name: Kim, Kyuseok
Publisher: name: figshare
Year: 2021
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 7. Macrophage polarization in hyperinflammation model.
Optics for X-ray telescopes: analytical treatment of the off-axis effective area of mirrors in optical modules
Creators: name: Spiga, Daniele
Publisher: name: arXiv
Year: 2011
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: Optical modules for X-ray telescopes comprise several double-reflection mirrors operating in grazing incidence. The concentration power of an optical module, which determines primarily the telescope's sensitivity, is in general expressed by its on-axis effective area as a function of the X-ray energy. Nevertheless, the effective area of X-ray mirrors in general decreases as the source moves off-axis, with a consequent loss of sensitivity. To make matters worse, the dense nesting of mirror shells in an optical module results in a mutual obstruction of their aperture when an astronomical source is off-axis, with a further effective area reduction. [...] While the effective area of an X-ray mirror is easy to predict on-axis, the same task becomes more difficult for a source off-axis. It is therefore important to develop an appropriate formalism to reliably compute the off-axis effective area of a Wolter-I mirror, including the effect of obstructions. Most of collecting area simulation for X-ray optical modules has been so far performed along with numerical codes, involving ray-tracing routines, very effective but in general complex, difficult to handle, time consuming and affected by statistical errors. In contrast, in a previous paper we approached this problem from an analytical viewpoint, to the end of simplifying and speeding up the prediction of the off-axis effective area of unobstructed X-ray mirrors with any reflective coating, including multilayers.In this work we extend the analytical results obtained: we show that the analytical formula for the off-axis effective area can be inverted, and we expose in detail a novel analytical treatment of mutual shell obstruction in densely nested mirror assemblies, which reduces the off-axis effective area computation to a simple integration. The results are in excellent agreement with the findings of a detailed ray-tracing routine.
description: 13 pages, 12 figures, version after language editing
Additional file 5 of The immune modulatory effects of mitochondrial transplantation on cecal slurry model in rat
Creators: name: Hwang, Jung Wook
name: Lee, Min Ji
name: Chung, Tae Nyoung
name: Lee, Han A. Reum
name: Lee, Jung Ho
name: Choi, Seo Yoon
name: Park, Ye Jin
name: Kim, Chul Hee
name: Isom Jin
name: Kim, Seong Hoon
name: Hyo-Bum Kwak
name: Jun-Won Heo
name: Kwangmin Na
name: Sangchun Choi
name: Choi, Yong-Soo
name: Kim, Kyuseok
Publisher: name: figshare
Year: 2021
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 5. Proinflammatory cytokine expression in in vitro model of hyperinflammation and immunosuppression.
Curricular Summary for the AI Bootcamp for Cyberinfrastructure Professionals
Creators: name: Tomko, Karen
Publisher: name: Zenodo
Year: 2023
Subjects: Artificial Intelligence
Research Computing
Cyberinfrastructure
Workforce development

description: These slides summarize the curriculum developed for the following 2 year project which ran from Sept 1, 2021 - Aug 31, 2023.
"An Artificial Intelligence Bootcamp for Cyberinfrastructure Professionals" is a pilot project funded by the NSF Cybertraining program (Award:  OAC-2118250)
Project PI: Karent Tomko, ktomko@osc.edu
Co-PIs: DK Panda, Raghu Machiraju, Eric Foster-Lussier, Katherine Cahill
Abreviated abstract: Researchers are increasingly using AI techniques in their scientific processes. This is leading to a critical need for a Cyberinfrastructure (CI) workforce that supports HPC systems with expertise in AI techniques and underlying technology. This project will pilot an AI bootcamp for CI professionals that is targeted based on the professional's job requirements. After attending the bootcamp CI professionals will be better equipped to provide computing and data services to AI research users. This in turn will broaden adoption and effective use of advanced CI by researchers in a wide range of disciplines and will leave an impact on science and corresponding benefits to society from their successes. The training materials developed during this project will be openly shared with the CI community so that others can use and adapt the materials for similar training activities.
This project is novel in taking a holistic approach to addressing the AI expertise gap for CI professionals. We are developing an AI Bootcamp for CI professionals with the overarching goal of increasing the confidence and effectiveness of their support of AI researchers. We leverage the CI professionalization efforts of the Campus Research Computing Consortium (CaRCC) to organize our training modules and outcomes based on the four facings (Strategy/Policy facing, Researcher facing, Software/Data facing, and Systems facing).  For this pilot we are focused on developing a comprehensive training experience for Software/Data facing CI professionals. The AI Bootcamp will be offered virtually. A 6 week foundational session targeting all of the facings will be piloted in Spring 2022, followed by an additional 6 week session for Software/Data facing CI professionals in Fall 2022.  Our project team is comprised of CI professionals, experienced in training CI users and providing CI operations, and Computer Science faculty members, experienced in offering courses in Data Analytics, AI and High Performance AI with active AI-based research programs. Drawing on extensive experience and materials in hands-on experiential learning for AI, the team is putting together a comprehensive curriculum spanning foundational AI, software frameworks, and high performance computing for AI.
Reach out to the project PI, Karen Tomko, ktomko@osc.edu to inquire about the learning materials from these bootcamps.
Monomial ideals and toric rings of Hibi type arising from a finite poset
Creators: name: Ene, Viviana
name: Herzog, Juergen
name: Mohammadi, Fatemeh
Publisher: name: arXiv
Year: 2010
Subjects: subject: Commutative Algebra (math.AC)
subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: 13C14, 13C15, 13H10, 05E40

description: In this paper we study monomial ideals attached to posets, introduce generalized Hibi rings and investigate their algebraic and homological properties. The main tools to study these objects are Groebner basis theory, the concept of sortability due to Sturmfels and the theory of weakly polymatroidal ideals.
description: revised version
Additional file 8 of The immune modulatory effects of mitochondrial transplantation on cecal slurry model in rat
Creators: name: Hwang, Jung Wook
name: Lee, Min Ji
name: Chung, Tae Nyoung
name: Lee, Han A. Reum
name: Lee, Jung Ho
name: Choi, Seo Yoon
name: Park, Ye Jin
name: Kim, Chul Hee
name: Isom Jin
name: Kim, Seong Hoon
name: Hyo-Bum Kwak
name: Jun-Won Heo
name: Kwangmin Na
name: Sangchun Choi
name: Choi, Yong-Soo
name: Kim, Kyuseok
Publisher: name: figshare
Year: 2021
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 8. Phagocytosis of E.coli-FITC in immune paralysis model.
Aggregation of ferromagnetic and paramagnetic atoms at edges of graphenes and graphite
Creators: name: Haiqing, Zhou
name: Huaichao, Yang
name: Caiyu, Qiu
name: Zheng, Liu
name: Fang, Yu
name: Lijun, Hu
name: Xiaoxiang, Xia
name: Haifang, Yang
name: Changzhi, Gu
name: Lianfeng, Sun
Publisher: name: arXiv
Year: 2011
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: In this work, we report that when ferromagnetic metals (Fe, Co and Ni) are thermally evaporated onto n-layer graphenes and graphite, a metal nanowire and adjacent nanogaps can be found along the edges regardless of its zigzag or armchair structure. Similar features can also be observed for paramagnetic metals, such as Mn, Al and Pd. Meanwhile, metal nanowires and adjacent nanogaps can not be found for diamagnetic metals (Au and Ag). An external magnetic field during the evaporation of metals can make these unique features disappear for ferromagnetic and paramagnetic metal; and the morphologies of diamagnetic metal do not change after the application of an external magnetic field. We discuss the possible reasons for these novel and interesting results, which include possible one dimensional ferromagnets along the edge and edge-related binding energy.
description: 11 pages, 4 figures
Discovery of Gas Bulk Motion in the Galaxy Cluster Abell 2256 with Suzaku
Creators: name: Tamura, Takayuki
name: Hayashida, Kiyoshi
name: Ueda, Shutaro
name: Nagai, Masaaki
Publisher: name: arXiv
Year: 2011
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: The results from Suzaku observations of the galaxy cluster Abell2256 are presented. This cluster is a prototypical and well-studied merging system, exhibiting substructures both in the X-ray surface brightness and in the radial velocity distribution of member galaxies. There are main and sub components separating by 3'.5 in the sky and by about 2000 km s$^{-1}$ in radial velocity peaks of member galaxies. In order to measure Doppler shifts of iron K-shell lines from the two gas components by the Suzaku XIS, the energy scale of the instrument was evaluated carefully and found to be calibrated well. A significant shift of the radial velocity of the sub component gas with respect to that of the main cluster was detected. All three XIS sensors show the shift independently and consistently among the three. The difference is found to be 1500 $\pm 300$ (statistical) $\pm 300$ (systematic) km s$^{-1}$. The X-ray determined absolute redshifts of and hence the difference between the main and sub components are consistent with those of member galaxies in optical. The observation indicates robustly that the X-ray emitting gas is moving together with galaxies as a substructure within the cluster. These results along with other X-ray observations of gas bulk motions in merging clusters are discussed.
description: Accepted for publication in PASJ in 2011-03-28
Loop Formulas for Description Logic Programs
Creators: name: Wang, Yisong
name: You, Jia-Huai
name: Yuan, Li Yan
name: Shen, Yi-Dong
Publisher: name: arXiv
Year: 2010
Subjects: subject: Artificial Intelligence (cs.AI)
subject: Logic in Computer Science (cs.LO)
subject: FOS: Computer and information sciences

description: Description Logic Programs (dl-programs) proposed by Eiter et al. constitute an elegant yet powerful formalism for the integration of answer set programming with description logics, for the Semantic Web. In this paper, we generalize the notions of completion and loop formulas of logic programs to description logic programs and show that the answer sets of a dl-program can be precisely captured by the models of its completion and loop formulas. Furthermore, we propose a new, alternative semantics for dl-programs, called the {\em canonical answer set semantics}, which is defined by the models of completion that satisfy what are called canonical loop formulas. A desirable property of canonical answer sets is that they are free of circular justifications. Some properties of canonical answer sets are also explored.
description: 29 pages, 1 figures (in pdf), a short version appeared in ICLP'10
Development of process analytical technologies and application for complicated reaction conditions
Creators: name: Sato, Yusuke
Publisher: name: University of British Columbia
Year: 2023

description: Real-time sample analysis, including in situ analysis and automated sampling/injection, provides timely measurements of analytes and facilitates efficient reaction elucidations. In contrast to manual sampling, real-time sample analysis eliminates laborious sample preparations and increases efficiency and robustness in obtaining data-rich information. Unfortunately, many instrumental analytical tools used for real-time reaction monitoring are only applicable to homogeneous conditions, leaving heterogeneous conditions a major challenge. This thesis explores developments and applications of new heterogenous sampling platforms to investigate reaction details. Combing commercially available laboratory equipment with an in-line dynamic mixer, an online HPLC reaction monitoring system has been developed to investigate solid/liquid heterogeneous reactions. Using this platform, a slurry tetrabenazine (TBZ) synthesis has been investigated. The isolation and characterization of unseen enone and iminium intermediates proved that the reaction underwent the aza-Michael-Mannich annulation pathway. Our increased mechanistic understanding has allowed for the reaction rate to be boosted five-fold. For liquid/liquid heterogeneous reaction monitoring, a phase-selective sampling system was developed. This was achieved by developing a novel hydrophilic/oleophobic stainless steel filter. Partition coefficients of boronic acids with varying functional groups have been tested using this platform. Biphasic Suzuki-Miyaura coupling reaction was also explored. In addition to the heterogeneous conditions, nanocluster synthesis was also known to create challenging conditions to be monitored due to its complicated polydisperse cluster formations. This thesis lastly demonstrated that real-time LCMS monitoring revealed size growth of gold nanoclusters synthesis and potential intermediates.
Additional file 1 of Knowledge, attitude and perceptions about Crimean Congo Haemorrhagic Fever (CCHF) among occupationally high-risk healthcare professionals of Pakistan
Creators: name: Ahmed, Ali
name: Saqlain, Muhammad
name: Tanveer, Maria
name: Tahir, Azhar Hussain
name: Fakhar Ud-Din
name: Maryum Ibrar Shinwari
name: Khan, Gul Majid
name: Anwer, Naveed
Publisher: name: figshare
Year: 2021
Subjects: Medicine
Biotechnology
Science Policy

description: Additional file 1.
X-Ray-TLS: Transparent Decryption of TLS Sessions by Extracting Session Keys from Memory
Creators: name: Moriconi, Florent
name: Levillain, Olivier
name: Francillon, Aurélien
name: Troncy, Raphaël
Publisher: name: Zenodo
Year: 2024

description: Proof of concept implementation of X-Ray-TLS.The latest version can be found on GitHub.
Universal and non-universal features of the multifractality exponents of critical wave-functions
Creators: name: Rushkin, I.
name: Ossipov, A.
name: Fyodorov, Y. V.
Publisher: name: arXiv
Year: 2011
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: We calculate perturbatively the multifractality spectrum of wave-functions in critical random matrix ensembles in the regime of weak multifractality. We show that in the leading order the spectrum is universal, while the higher order corrections are model-specific. Explicit results for the anomalous dimensions are derived in the power-law and ultrametric random matrix ensembles.
description: 9 pages
Infrared and kinematic properties of the substellar object G 196-3B
Creators: name: Osorio, M. R. Zapatero
name: Rebolo, R.
name: Bihain, G.
name: Béjar, V. J. S.
name: Caballero, J. A.
name: Álvarez, C.
Publisher: name: arXiv
Year: 2010
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: We report unusual near- and mid-infrared photometric properties of G 196-3 B, the young substellar companion at 16 arcsec from the active M2.5-type star G 196-3 A, using data taken with the IRAC and MIPS instruments onboard Spitzer. G 196-3 B shows markedly redder colors at all wavelengths from 1.6 up to 24 micron than expected for its spectral type, which is determined at L3 from optical and near-infrared spectra. We discuss various physical scenarios to account for its reddish nature, and conclude that a low-gravity atmosphere with enshrouded upper atmospheric layers and/or a warm dusty disk/envelope provides the most likely explanations, the two of them consistent with an age in the interval 20-300 Myr. We also present new and accurate separate proper motion measurements for G 196-3 A and B confirming that both objects are gravitationally linked and share the same motion within a few mas/yr. After integration of the combined spectrophotometric spectral energy distributions, we obtain that the difference in the bolometric magnitudes of G 196-3 A and B is 6.15 +/- 0.10 mag. Kinematic consideration of the Galactic space motions of the system for distances in the interval 15-30 pc suggests that the pair is a likely member of the Local Association, and that it lay near the past positions of young star clusters like alpha Persei less than 85 Myr ago, where the binary might have originated. At these young ages, the mass of G 196-3 B would be in the range 12-25 Mjup, close to the frontier between planets and brown dwarfs.
description: Accepted for publication in ApJ.
Binary Asteroid Systems: Tidal End States and Estimates of Material Properties
Creators: name: Taylor, Patrick A.
name: Margot, Jean-Luc
Publisher: name: arXiv
Year: 2011
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: The locations of the fully despun, double synchronous end states of tidal evolution are derived for spherical components. With the exception of nearly equal-mass binaries, binary asteroid systems are in the midst of lengthy tidal evolutions, far from their fully synchronous tidal end states. Calculations of material strength indicate that binaries in the main belt with 100-km-scale primary components are consistent with being made of monolithic or fractured rock as expected for binaries likely formed from sub-catastrophic impacts in the early solar system. To tidally evolve in their dynamical lifetime, near-Earth binaries with km-scale primaries or smaller must be much weaker mechanically than their main-belt counterparts even if formed in the main belt prior to injection into the near-Earth region. Small main-belt binaries with primary components less than 10 km in diameter, depending on their ages, could either be as strong as large main-belt binaries or as weak as near-Earth binaries because the inherent uncertainty in the age of a binary system can affect the calculation of material strength by orders of magnitude. Several other issues are considered, though these typically affect the calculation of material strength by no more than a factor of two. We also find indirect evidence within all three groups of binary asteroids that the inter-component separation may evolve via another mechanism(s) with the binary YORP effect being a likely candidate.
description: 39 pages, 3 tables, 6 figures, published in Icarus
Additional file 1 of Pharmacokinetics of indacaterol, glycopyrronium and mometasone furoate administered as an inhaled fixed-dose combination in Japanese and Caucasian healthy subjects
Creators: name: Inoue, Satoru
name: Vaidya, Soniya
name: Hanns-Christian Tillmann
name: Sakita, Yohei
name: Surendra Machineni
name: Heudi, Olivier
name: Furihata, Kenichi
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: 60506 Virology
subject: Computational Biology

description: Additional file 1. Analytical parameters and performances of the three methods used for IND, GLY and MF.
Radial Velocities and Pulsation Ephemerides of 11 Field RR Lyrae Stars
Creators: name: For, Bi-Qing
name: Preston, George W.
name: Sneden, Christopher
Publisher: name: arXiv
Year: 2011
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We present new radial velocities, improved pulsation periods and reference epoch s of 11 field RR Lyrae ab-type variables: AS Vir, BS Aps, CD Vel, DT Hya, RV Oct, TY Gru, UV Oct, V1645 Sgr, WY Ant, XZ Aps and Z Mic. This study is based on high resolution spectra obtained with the echelle spectro graph of the 2.5-m du Pont telescope at Las Campanas Observatory. We obtained ~200 spectra per star (i.e, total of ~2300 spectra) distributed more or less uniformly throughout their pulsation cycles. Radial velocity curves and photometric lightcurves phased to our new ephemerides are presented for all program stars. In a subsequent paper, we will use these spectra to derive stellar atmospheric parameters and chemical compositions throughout the pulsational cycles, based purely on spectroscopic constraints.
description: 28 pages, 14 figures, 5 tables. Accepted for publication in ApJS