cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Multi-Layer Ranking with Large Language Models for News Source Recommendation
Creators: name: Zhang, Wenjia
name: Gui, Lin
name: Procter, Rob
name: He, Yulan
Publisher: name: arXiv
Year: 2024
Subjects: subject: Information Retrieval (cs.IR)
subject: Computation and Language (cs.CL)
subject: FOS: Computer and information sciences

description: To seek reliable information sources for news events, we introduce a novel task of expert recommendation, which aims to identify trustworthy sources based on their previously quoted statements. To achieve this, we built a novel dataset, called NewsQuote, consisting of 23,571 quote-speaker pairs sourced from a collection of news articles. We formulate the recommendation task as the retrieval of experts based on their likelihood of being associated with a given query. We also propose a multi-layer ranking framework employing Large Language Models to improve the recommendation performance. Our results show that employing an in-context learning based LLM ranker and a multi-layer ranking-based filter significantly improve both the predictive quality and behavioural quality of the recommender system.
description: Accepted by the SIGIR 2024. arXiv admin note: text overlap with arXiv:2305.04825
Axion-mediated electron-nucleus and electron-electron interactions in barium monofluoride molecule
Creators: name: Prosnyak, Sergey D.
name: Skripnikov, Leonid V.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Atomic Physics (physics.atom-ph)
subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: The effects induced by the time-reversal ($\mathcal{T}$) and spatial parity ($\mathcal{P}$) violating electron-nucleus and electron-electron interactions mediated by the axion-like particles (ALPs) in the BaF molecule were estimated. Molecular parameters characterizing these interactions were calculated across a wide range of ALP masses. In case of the electron-nuclear interaction, the effect of the extended nucleus was studied and shown to be significant for heavy ALPs. Based on the calculated molecular parameters, we obtained a link between the $\mathcal{T}$,$\mathcal{P}$-violating energy shift which can be measured in the ongoing experiment designed to search for the electron electric dipole moment using the BaF molecule [A. Boeschoten et al., arXiv:2303.06402 (2023)] and the products of coupling constants of the ALP-electron or ALP-electron and ALP-nucleus interactions.
Supplementary_Online_Material – Supplemental material for The Development and Validation of the Cognitions of Internet Sexual Offending (C-ISO) Scale
Creators: name: Paquette, Sarah
name: Cortoni, Franca
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 160299 Criminology not elsewhere classified
subject: FOS: Law
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental material, Supplementary_Online_Material for The Development and Validation of the Cognitions of Internet Sexual Offending (C-ISO) Scale by Sarah Paquette and Franca Cortoni in Sexual Abuse: A Journal of Research and Treatment
Supplementary_table – Supplemental material for It feels real: physiological responses to a stressful virtual reality environment and its impact on working memory
Creators: name: Martens, Marieke AG
name: Antley, Angus
name: Freeman, Daniel
name: Slater, Mel
name: Harrison, Paul J
name: Tunbridge, Elizabeth M
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)

description: Supplemental material, Supplementary_table for It feels real: physiological responses to a stressful virtual reality environment and its impact on working memory by Marieke AG Martens, Angus Antley, Daniel Freeman, Mel Slater, Paul J Harrison and Elizabeth M Tunbridge in Journal of Psychopharmacology
Additional file 2 of Maternal distress and parenting during COVID-19: differential effects related to pre-pandemic distress?
Creators: name: Low, Ann
name: Yu, Yue
name: Sim, Lit Wee
name: Bureau, Jean Francois
name: Tan, Ngiap Chuan
name: Chen, Helen
name: Yang, Yang
name: Cheon, Bobby
name: Lee, Kerry
name: Bakermans-Kranenburg, Marian
name: Tsotsi, Stella
name: Rifkin-Graboi, Anne
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Science Policy
Mental Health

description: Additional file 2: COVID-19 Phases within the COVID-19 Questionnaire. A description of the three phases of the Pandemic in Singapore: COVID-19’s Beginning, the Circuit Breaker (Lockdown), and Post-Circuit Breaker.
Open-system approach to nonequilibrium quantum thermodynamics at arbitrary coupling
Creators: name: Colla, Alessandra
name: Breuer, Heinz-Peter
Publisher: name: arXiv
Year: 2021
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We develop a general theory describing the thermodynamical behavior of open quantum systems coupled to thermal baths beyond perturbation theory. Our approach is based on the exact time-local quantum master equation for the reduced open system states, and on a principle of minimal dissipation. This principle leads to a unique prescription for the decomposition of the master equation into a Hamiltonian part representing coherent time evolution and a dissipator part describing dissipation and decoherence. Employing this decomposition we demonstrate how to define work, heat, and entropy production, formulate the first and second law of thermodynamics, and establish the connection between violations of the second law and quantum non-Markovianity.
description: 7 pages, 2 figures. v2: small modifications in the text, references added, example model added. v3: title change, modifications in the text, remarks added, published in Phys. Rev. A
Additional file 1 of Is alcohol and psychoactive medication use associated with excess hospital length-of-stay and admission frequency? A cross-sectional, observational study
Creators: name: Gamboa, Danil
name: Kabashi, Saranda
name: Jørgenrud, Benedicte
name: Lerdal, Anners
name: Nordby, Gudmund
name: Bogstrand, Stig Tore
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Marine Biology
subject: Cancer
subject: Science Policy
subject: Mental Health

description: Supplementary Material 1
Additional file 1 of Clinical presentation and management of methanol poisoning outbreaks in Riyadh, Saudi Arabia: a retrospective analysis
Creators: name: Alhusain, Faisal
name: Alshalhoub, Mohammed
name: Homaid, Moath Bin
name: Esba, Laila Carolina Abu
name: Alghafees, Mohammad
name: Al Deeb, Mohammad
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Science Policy

description: Supplementary Material 1
Supplementary_Figures – Supplemental material for Non-conventional stabilisation/solidification treatment of industrial wastes with residual powdered paints
Creators: name: Vaccari, Mentore
name: Castro, Francine Duarte
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 111799 Public Health and Health Services not elsewhere classified
subject: FOS: Health sciences
subject: 99999 Engineering not elsewhere classified
subject: FOS: Other engineering and technologies

description: Supplemental material, Supplementary_Figures for Non-conventional stabilisation/solidification treatment of industrial wastes with residual powdered paints by Mentore Vaccari and Francine Duarte Castro in Waste Management & Research
title: The changing role of global financial brands in the underwriting of foreign government debt (1815-2010)
Creators: name: Flandreau, Marc
name: Flores, Juan H.
name: Gaillard, Norbert
name: Nieto-Parra, Sebastián
Publisher: name: Graduate Institute of International and Development Studies
publisherIdentifier: https://ror.org/007ygn379
publisherIdentifierScheme: ROR
Year: 2011

description: Graduate Institute of International and Development Studies Working Paper ; no. 15/2011
Paradigm Shift in Natural Language Processing
Creators: name: Sun, Tianxiang
name: Liu, Xiangyang
name: Qiu, Xipeng
name: Huang, Xuanjing
Publisher: name: arXiv
Year: 2021
Subjects: subject: Computation and Language (cs.CL)
subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: In the era of deep learning, modeling for most NLP tasks has converged to several mainstream paradigms. For example, we usually adopt the sequence labeling paradigm to solve a bundle of tasks such as POS-tagging, NER, Chunking, and adopt the classification paradigm to solve tasks like sentiment analysis. With the rapid progress of pre-trained language models, recent years have observed a rising trend of Paradigm Shift, which is solving one NLP task by reformulating it as another one. Paradigm shift has achieved great success on many tasks, becoming a promising way to improve model performance. Moreover, some of these paradigms have shown great potential to unify a large number of NLP tasks, making it possible to build a single model to handle diverse tasks. In this paper, we review such phenomenon of paradigm shifts in recent years, highlighting several paradigms that have the potential to solve different NLP tasks.
description: Accepted to Machine Intelligence Research. Published version: https://link.springer.com/article/10.1007/s11633-022-1331-6. Website: https://txsun1997.github.io/nlp-paradigm-shift
Degree-of-Freedom of Modulating Information in the Phases of Reconfigurable Intelligent Surface
Creators: name: Cheng, Hei Victor
name: Yu, Wei
Publisher: name: arXiv
Year: 2021
Subjects: subject: Information Theory (cs.IT)
subject: Signal Processing (eess.SP)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: This paper investigates the information theoretic limit of a reconfigurable intelligent surface (RIS) aided communication scenario in which the RIS and the transmitter either jointly or independently send information to the receiver. The RIS is an emerging technology that uses a large number of passive reflective elements with adjustable phases to intelligently reflect the transmit signal to the intended receiver. While most previous studies of the RIS focus on its ability to beamform and to boost the received signal-to-noise ratio (SNR), this paper shows that if the information data stream is also available at the RIS and can be modulated through the adjustable phases at the RIS, significant improvement in the {degree-of-freedom} (DoF) of the overall channel is possible. For example, for an RIS system in which the signals are reflected from a transmitter with $M$ antennas to a receiver with $K$ antennas through an RIS with $N$ reflective elements, assuming no direct path between the transmitter and the receiver, joint transmission of the transmitter and the RIS can achieve a DoF of $\min\left(M+\frac{N}{2}-\frac{1}{2},N,K\right)$ as compared to the DoF of $\min(M,K)$ for the conventional multiple-input multiple-output (MIMO) channel. This result is obtained by establishing a connection between the RIS system and the MIMO channel with phase noise and by using results for characterizing the information dimension under projection. The result is further extended to the case with a direct path between the transmitter and the receiver, and also to the multiple access scenario, in which the transmitter and the RIS send independent information. Finally, this paper proposes a symbol-level precoding approach for modulating data through the phases of the RIS, and provides numerical simulation results to verify the theoretical DoF results.
description: 20 pages, 7 figures, published in IEEE Transactions on Information Theory. Comments are most welcome and appreciated
Additional file 1 of The antennal transcriptome analysis and characterizations of odorant-binding proteins in Megachile saussurei (Hymenoptera, Megachilidae)
Creators: name: Li, Wei-Zhen
name: Kang, Wen-Juan
name: Zhou, Jing-Jiang
name: Shang, Su-Qin
name: Shi, Shang-Li
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Physiology
subject: Evolutionary Biology
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Plant Biology

description: Additional file 1: Figure S1. Flow chart of mRNA library construction. Figure S2. The distribution in sequence size of all unigenes. Figure S3. The assembly evaluation based on BUSCO. Complete: Sequences that matched to the records of the BUSCO database; F(fragmented): Partial sequences that matched to the records of the BUSCO database; D(duplicate): Multiple genes matched to one record of the BUSCO database; M(missing): Sequences that were filtered out. Table S1. OBP genes information of other species in phylogenetic analysis. Table S2. Gene-specific primers used for quantitative real-time PCR. Table S3. Quality statistics of filtered Reads in transcriptome sequencing. Table S4. The quality indicators of unigenes after Denovo assembly. Table S5. Functional annotation results of unigenes.
Semi-classical theory of quantum stochastic resistors
Creators: name: Jin, Tony
name: Ferreira, João
name: Bauer, Michel
name: Filippone, Michele
name: Giamarchi, Thierry
Publisher: name: arXiv
Year: 2022
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We devise a semi-classical model to describe the transport properties of low-dimensional fermionic lattices under the influence of external quantum stochastic noise. These systems behave as quantum stochastic resistors, where the bulk particle transport is diffusive and obeys the Ohm/Fick's law. Here, we extend previous exact studies beyond the one-dimensional limit to ladder geometries and explore different dephasing mechanisms that are relevant to different physical systems, from solid-state to cold atoms. We find a non-trivial dependence of the conductance of these systems on the chemical potential of the reservoirs. We then introduce a semi-classical approach that is in good agreement with the exact numerical solution and provides an intuitive and simpler interpretation of transport in quantum stochastic resistors. Moreover, we find that the conductance of quantum ladders is insensitive to the coherence of the dephasing process along the direction transverse to transport, despite the fact that the system reaches different stationary states. We conclude by discussing the case of dissipative leads affected by dephasing, deriving the conditions for which they effectively behave as Markovian injectors of particles in the system.
description: 13 pages, 5 figures
DS_10.1177_0022034519858976 – Supplemental material for Generation of Amelx-iCre Mice Supports Ameloblast-Specific Role for Stim1
Creators: name: R. Said
name: L. Zheng
name: T. Saunders
name: M. Zeidler
name: S. Papagerakis
name: P. Papagerakis
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 110599 Dentistry not elsewhere classified
subject: FOS: Clinical medicine
subject: 91299 Materials Engineering not elsewhere classified
subject: FOS: Materials engineering

description: Supplemental material, DS_10.1177_0022034519858976 for Generation of Amelx-iCre Mice Supports Ameloblast-Specific Role for Stim1 by R. Said, L. Zheng, T. Saunders, M. Zeidler, S. Papagerakis and P. Papagerakis in Journal of Dental Research
Supplemental Material, arsenic_meta-analysis_appendix_2 - Low-Level Exposure to Arsenic in Drinking Water and Risk of Lung and Bladder Cancer: A Systematic Review and Dose–Response Meta-Analysis
Creators: name: Boffetta, Paolo
name: Borron, Claire
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: FOS: Clinical medicine
subject: 110320 Radiology and Organ Imaging

description: Supplemental Material, arsenic_meta-analysis_appendix_2 for Low-Level Exposure to Arsenic in Drinking Water and Risk of Lung and Bladder Cancer: A Systematic Review and Dose–Response Meta-Analysis by Paolo Boffetta and Claire Borron in Dose-Response
Multiphoton-pumped UV-Vis transient absorption spectroscopy of 2D materials: basic concepts and recent applications
Creators: name: Glinka, Yuri D
Publisher: name: arXiv
Year: 2023
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: 2D materials are considered a key element in the development of next-generation electronics (nanoelectronics) due to their extreme thickness in the nanometer range and unique physical properties. The ultrafast dynamics of photoexcited carriers in such materials are strongly influenced by their interfaces, since the thickness of 2D materials is much smaller than the typical depth of light penetration into their bulk counterparts and the mean free path of photoexcited carriers. The resulting collisions of photoexcited carriers with interfacial potential barriers of 2D materials in the presence of a strong laser field significantly alter the overall dynamics of photoexcitation, allowing laser light to be directly absorbed by carriers in the conduction/valence band through the inverse bremsstrahlung mechanism. The corresponding ultrafast carrier dynamics can be monitored using multiphoton-pumped UV-Vis transient absorption spectroscopy. In this review, we discuss the basic concepts and recent applications of this spectroscopy for a variety of 2D materials, including transition-metal dichalcogenide monolayers, topological insulators, and other 2D semiconductor structures.
Superconductivity due to fluctuating loop currents
Creators: name: Palle, Grgur
name: Ojajärvi, Risto
name: Fernandes, Rafael M.
name: Schmalian, Jörg
Publisher: name: arXiv
Year: 2023
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Orbital magnetism and the loop currents (LC) that accompany it have been proposed to emerge in many systems, including cuprates, iridates, and kagome superconductors. In the case of cuprates, LCs have been put forward as the driving force behind the pseudogap, strange-metal behavior, and $d_{x^2-y^2}$-wave superconductivity. Here, we investigate whether fluctuating intra-unit-cell loop currents can cause unconventional superconductivity. For odd-parity LCs, we find that they are strongly repulsive in all pairing channels near the underlying quantum-critical point (QCP). For even-parity LCs, their fluctuations do give rise to unconventional pairing. However, this pairing is not amplified in the vicinity of the QCP, in sharp contrast to other known cases of pairing mediated by intra-unit-cell order parameters, such as spin-magnetic, nematic, or ferroelectric ones. Applying our formalism to the cuprates, we conclude that pairing mediated by fluctuating intra-unit-cell LCs is unlikely to yield $d_{x^2-y^2}$-wave superconductivity. We also show that loop currents, if relevant for the cuprates, must vary between unit cells and break translation symmetry.
description: 12 pages, 7 figures
Quantifying Qubit Magic Resource with Gottesman-Kitaev-Preskill Encoding
Creators: name: Hahn, Oliver
name: Ferraro, Alessandro
name: Hultquist, Lina
name: Ferrini, Giulia
name: García-Álvarez, Laura
Publisher: name: arXiv
Year: 2021
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Quantum resource theories are a powerful framework to characterize and quantify relevant quantum phenomena and identify processes that optimize their use for different tasks. Here, we define a resource measure for magic, the sought-after property in most fault-tolerant quantum computers. In contrast to previous literature, our formulation is based on bosonic codes, well-studied tools in continuous-variable quantum computation. Particularly, we use the Gottesman-Kitaev-Preskill code to represent multi-qubit states and consider the resource theory for the Wigner negativity. Our techniques are useful to find resource lower bounds for different applications as state conversion and general unitary synthesis, in which measurements, auxiliary states, and classical feed-forward are allowed. The analytical expression of our magic measure allows us to extend current analysis limited to small dimensions, easily addressing systems of up to 12 qubits.
supplement_material – Supplemental material for Young Children’s Screen Time and Physical Activity: Perspectives of Parents and Early Care and Education Center Providers
Creators: name: Joseph, Elizabeth D.
name: Kracht, Chelsea L.
name: Romain, Jessica St.
name: Allen, Andrew T.
name: Barbaree, Caroline
name: Corby K. Martin
name: Staiano, Amanda E.
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: 111099 Nursing not elsewhere classified
subject: FOS: Health sciences
subject: 111403 Paediatrics

description: Supplemental material, supplement_material for Young Children’s Screen Time and Physical Activity: Perspectives of Parents and Early Care and Education Center Providers by Elizabeth D. Joseph, Chelsea L. Kracht, Jessica St. Romain, Andrew T. Allen, Caroline Barbaree, Corby K. Martin and Amanda E. Staiano in Global Pediatric Health
Pattern formation in charge density wave states after a quantum quench
Creators: name: Yang, Lingyu
name: Yang, Yang
name: Chern, Gia-Wei
Publisher: name: arXiv
Year: 2023
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We study post-quench dynamics of charge-density-wave (CDW) order in the square-lattice $t$-$V$ model. The ground state of this system at half-filling is characterized by a checkerboard modulation of particle density. A generalized self-consistent mean-field method, based on the time-dependent variational principle, is employed to describe the dynamical evolution of the CDW states. Assuming a homogeneous CDW order throughout the quench process, the time-dependent mean-field approach is reduced to the Anderson pseudospin method. Quench simulations based on the Bloch equation for pseudospins produce three canonical behaviors of order-parameter dynamics: phase-locked persistent oscillation, Landau-damped oscillation, and dynamical vanishing of the CDW order. We further develop an efficient real-space von Neumann equation method to incorporate dynamical inhomogeneity into simulations of quantum quenches. Our large-scale simulations uncover complex pattern formations in the post-quench CDW states, especially in the strong quench regime. The emergent spatial textures are characterized by super density modulations on top of the short-period checkerboard CDW order. Our demonstration of pattern formation in quenched CDW states, described by a simple broken $Z_2$ symmetry, underscores the importance of dynamical inhomogeneity in quantum quenches of many-body systems with more complex orders.
description: 14 pages, 8 figures
Additional file 1 of The Association between Cardio-metabolic and hepatic indices and anthropometric measures with metabolically obesity phenotypes: a cross-sectional study from the Hoveyzeh Cohort Study
Creators: name: Zakerkish, Mehrnoosh
name: Hoseinian, Azamsadat
name: Alipour, Meysam
name: Payami, Seyed Peyman
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Computational Biology

description: Supplementary Material 1
Additional file 1 of Genome-wide identification of polyamine metabolism and ethylene synthesis genes in Chenopodium quinoa Willd. and their responses to low-temperature stress
Creators: name: Zhao, Xiaoxue
name: Wang, Shiyu
name: Guo, Fenggen
name: Xia, Pan
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Supplementary Material 1
LHCb potential to discover long-lived new physics particles with lifetimes above 100 ps
Creators: name: Gorkavenko, Volodymyr
name: Jashal, Brij
name: Kholoimov, Valerii
name: Kyselov, Yehor
name: Mendoza, Diego
name: Ovchynnikov, Maksym
name: Oyanguren, Arantza
name: Svintozelskyi, Volodymyr
name: Zhuo, Jiahui
Publisher: name: arXiv
Year: 2023
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: For years, it has been believed that the main LHC detectors can only restrictively play the role of a lifetime frontier experiment exploring the parameter space of long-lived particles (LLPs) - hypothetical particles with tiny couplings to the Standard Model. This paper demonstrates that the LHCb experiment may become a powerful lifetime frontier experiment if it uses the new Downstream algorithm reconstructing tracks that do not let hits in the LHCb vertex tracker. In particular, for many LLP scenarios, LHCb may be as sensitive as the proposed experiments beyond main LHC detectors for various LLP models, including heavy neutral leptons, dark scalars, dark photons, and axion-like particles.
description: Matches the version accepted for the publication in EPJC
Eco-evolutionary dynamics of cooperative antimicrobial resistance in a population of fluctuating volume and size
Creators: name: Hernández-Navarro, Lluís
name: Asker, Matthew
name: Mobilia, Mauro
Publisher: name: arXiv
Year: 2023
Subjects: subject: Populations and Evolution (q-bio.PE)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Adaptation and Self-Organizing Systems (nlin.AO)
subject: Biological Physics (physics.bio-ph)
subject: FOS: Biological sciences
subject: FOS: Physical sciences

description: Antimicrobial resistance to drugs (AMR), a global threat to human and animal health, is often regarded as resulting from cooperative behaviour. Moreover, microbes generally evolve in volatile environments that, together with demographic fluctuations (birth and death events), drastically alter population size and strain survival. Motivated by the need to better understand the evolution of AMR, we study a population of time-varying size consisting of two competing strains, one drug-resistant and one drug-sensitive, subject to demographic and environmental variability. This is modelled by a binary carrying capacity randomly switching between mild and harsh environmental conditions, and driving the fluctuating volume (total amount of nutrients and antimicrobials at fixed concentration), and thus the size of the community (number of resistant and sensitive cells). We assume that AMR is a shared public good when the concentration of resistant cells exceeds a fixed concentration cooperation threshold, above which the sensitive strain has a growth advantage, whereas resistant cells dominate below it. Using computational means, and devising an analytical treatment (built on suitable quenched and annealed averaging procedures), we fully characterise the influence of fluctuations on the eco-evolutionary dynamics of AMR, and notably obtain specific strain fixation and long-lasting coexistence probabilities as a function of the environmental variation rate and cooperation threshold. We find that microbial strains tend to coexistence, but demographic fluctuations eventually lead to the extinction of resistant or sensitive cells for small or large values of the concentration cooperation threshold, respectively. This also holds for dynamic environments, whose specific properties determine the extinction timescale.
description: 34+5 pages, 5 figures. Simulation data and codes for all figures are electronically available from the University of Leeds Data Repository. DOI: https://doi.org/10.5518/1462. In this version: minor typos corrected
Integrating Environmental Parameters in Energy System Modelling
Creators: name: de Tomás Pascual, Alexander
name: Pfenninger, Stefan
name: Lombardi, Francesco
name: Campos, Ines
name: Sierra Montoya, Miquel
name: Conceição Firmino de Souza, Debora
name: Madrid López, Cristina
Publisher: name: Zenodo
Year: 2023
Subjects: Energy Modelling
Life Cycle Assessment

description: Ongoing work presented at the 11th International Conference on Industrial Ecology (ISIE 2023). This research was conducted as part of the SEEDS project (https://seeds-project.org/), which is currently under review for publication (see:  https://ssrn.com/abstract=5100231 or or http://dx.doi.org/10.2139/ssrn.5100231)

 

This work has been developed as part of the SEEDS project (Stakeholder-Based Environmentally-Sustainable and Economically Doable Scenarios for the Energy Transition) (CHIST-ERA-19-CES-004) funded by the Spanish Research Agency (PCI2020-120710-2), the Swiss National Science Foundation (195537), and the Fundação para a Ciência e Tecnologia (FCT), Portugal (CHIST-ERA/0005/2019), and the European Commissions’Horizon 2020 program through project SENTINEL (H2020-837089).It received additional support from the Spanish research Agency with project LIVEN (PID2020-119565RJ-I00) and the Maria de Maeztu Unit (ICTA CEX2019-0940-M); the Catalan Government through the SosteniPra group (2021 SGR 00734) and Alexander de Tomás’ Joan Oró fellowship (2024FI-100741) and Inês Campos’ post-doc contract from the Fundação para a Ciência e Tecnologia (2020.01663.CEECIND/CP1605/CT0005)
A Systematic Construction Approach for All $4\times 4$ Involutory MDS Matrices
Creators: name: Kumar, Yogesh
name: Mishra, P. R.
name: Samanta, Susanta
name: Gaur, Atul
Publisher: name: arXiv
Year: 2024
Subjects: subject: Cryptography and Security (cs.CR)
subject: FOS: Computer and information sciences

description: Maximum distance separable (MDS) matrices play a crucial role not only in coding theory but also in the design of block ciphers and hash functions. Of particular interest are involutory MDS matrices, which facilitate the use of a single circuit for both encryption and decryption in hardware implementations. In this article, we present several characterizations of involutory MDS matrices of even order. Additionally, we introduce a new matrix form for obtaining all involutory MDS matrices of even order and compare it with other matrix forms available in the literature. We then propose a technique to systematically construct all $4 \times 4$ involutory MDS matrices over a finite field $\mathbb{F}_{2^m}$. This method significantly reduces the search space by focusing on involutory MDS class representative matrices, leading to the generation of all such matrices within a substantially smaller set compared to considering all $4 \times 4$ involutory matrices. Specifically, our approach involves searching for these representative matrices within a set of cardinality $(2^m-1)^5$. Through this method, we provide an explicit enumeration of the total number of $4 \times 4$ involutory MDS matrices over $\mathbb{F}_{2^m}$ for $m=3,4,\ldots,8$.
Additional file 1 of Subtyping irritable bowel syndrome using cluster analysis: a systematic review
Creators: name: Zarei, Diana
name: Saghazadeh, Amene
name: Rezaei, Nima
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Science Policy

description: Additional file 1. PRISMA 2020 Checklist.
Supplemental_Material._Table_1 – Supplemental material for Infection profile in neonatal patients during extracorporeal membrane oxygenation
Creators: name: Rodríguez, Rocío X
name: Villarroel, Luis A
name: Meza, Rodrigo A
name: Peña, Javier I
name: Musalem, Claudia
name: Kattan, Javier
name: Urzúa, Soledad
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Supplemental material, Supplemental_Material._Table_1 for Infection profile in neonatal patients during extracorporeal membrane oxygenation by Rocío X Rodríguez, Luis A Villarroel, Rodrigo A Meza, Javier I Peña, Claudia Musalem, Javier Kattan and Soledad Urzúa in The International Journal of Artificial Organs
Analyse or Transmit: Utilising Correlation at the Edge with Deep Reinforcement Learning
Creators: name: Hribar, Jernej
name: Shinkuma, Ryoichi
name: Iosifidis, George
name: Dusparic, Ivana
Publisher: name: arXiv
Year: 2021
Subjects: subject: Networking and Internet Architecture (cs.NI)
subject: FOS: Computer and information sciences

description: Millions of sensors, cameras, meters, and other edge devices are deployed in networks to collect and analyse data. In many cases, such devices are powered only by Energy Harvesting(EH) and have limited energy available to analyse acquired data. When edge infrastructure is available, a device has a choice: to perform analysis locally or offload the task to other resource-rich devices such as cloudlet servers. However, such a choice carries a price in terms of consumed energy and accuracy. On the one hand, transmitting raw data can result in a higher energy cost in comparison to the required energy to process data locally. On the other hand, performing data analytics on servers can improve the task's accuracy. Additionally, due to the correlation between information sent by multiple devices, accuracy might not be affected if some edge devices decide to neither process nor send data and preserve energy instead. For such a scenario, we propose a Deep Reinforcement Learning (DRL) based solution capable of learning and adapting the policy to the time-varying energy arrival due to EH patterns. We leverage two datasets, one to model energy an EH device can collect and the other to model the correlation between cameras. Furthermore, we compare the proposed solution performance to three baseline policies. Our results show that we can increase accuracy by 15% in comparison to conventional approaches while preventing outages.
Many-excitation removal of a transmon qubit using a single-junction quantum-circuit refrigerator and a two-tone microwave drive
Creators: name: Teixeira, Wallace
name: Mörstedt, Timm
name: Viitanen, Arto
name: Kivijärvi, Heidi
name: Gunyhó, András
name: Tiiri, Maaria
name: Kundu, Suman
name: Sah, Aashish
name: Vadimov, Vasilii
name: Möttönen, Mikko
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Achieving fast and precise initialization of qubits is a critical requirement for the successful operation of quantum computers. The combination of engineered environments with all-microwave techniques has recently emerged as a promising approach for the reset of superconducting quantum devices. In this work, we experimentally demonstrate the utilization of a single-junction quantum-circuit refrigerator (QCR) for an expeditious removal of several excitations from a transmon qubit. The QCR is indirectly coupled to the transmon through a resonator in the dispersive regime, constituting a carefully engineered environmental spectrum for the transmon. Using single-shot readout, we observe excitation stabilization times down to roughly $500$ ns, a $20$-fold speedup with QCR and a simultaneous two-tone drive addressing the $e$-$f$ and $f0$-$g1$ transitions of the system. Our results are obtained at a $48$-mK fridge temperature and without postselection, fully capturing the advantage of the protocol for the short-time dynamics and the drive-induced detrimental asymptotic behavior in the presence of relatively hot other baths of the transmon. We validate our results with a detailed Liouvillian model truncated up to the three-excitation subspace, from which we estimate the performance of the protocol in optimized scenarios, such as cold transmon baths and fine-tuned driving frequencies. These results pave the way for optimized reset of quantum-electric devices using engineered environments and for dissipation-engineered state preparation.
description: 14 pages, 5 figures
Additional file 2 of Subtyping irritable bowel syndrome using cluster analysis: a systematic review
Creators: name: Zarei, Diana
name: Saghazadeh, Amene
name: Rezaei, Nima
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Science Policy

description: Additional file 2. Search strategy.
Effective model and electron correlations in trilayer nickelate superconductor La$_4$Ni$_3$O$_{10}$
Creators: name: Tian, Peng-Fei
name: Ma, Hao-Tian
name: Ming, Xing
name: Zheng, Xiao-Jun
name: Li, Huan
Publisher: name: arXiv
Year: 2024
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: Recently, signatures of superconductivity with critical temperature from 20 to 30 K have been reported in pressured trilayer nickelate La$_4$Ni$_3$O$_{10}$ through a pressure-induced structure transition. Here we explore the evolution of electronic structures and electronic correlations in different phases of La$_4$Ni$_3$O$_{10}$ under corresponding pressure regions, by using density functional theory (DFT) combined with dynamical mean-field theory (DMFT). Similar to bilayer superconductor La$_3$Ni$_2$O$_{7}$, the electronic bands in superconducting La$_4$Ni$_3$O$_{10}$ are dominated by Ni-3$d_{x^2-y^2}$ and 3$d_{z^2}$ orbits near the Fermi level, in contrast, the inner Ni-O plane in La$_4$Ni$_3$O$_{10}$ generates a doublet hole-pocket Fermi surfaces around the Brillouin-zone corner, meanwhile one branch of the Ni-$3d_{z^2}$ bands is pushed very close above the Fermi level, which can induce an electron pocket through small electron doping. The DFT+DMFT simulations suggest that the electronic correlations only give minor modification to the Fermi surfaces, meanwhile the Ni-$3d_{z^2}$ and 3$d_{x^2-y^2}$ states on outer Ni-O layers have considerable greater mass enhancements than on the inner layer. The sensitiveness of electronic structure under doping and unique layer dependence of correlation suggest a distinct superconducting mechanism with respect to bilayer La$_3$Ni$_2$O$_{7}$. Based on the DFT and DFT+DMFT simulations, we eventually derive a trilayer effective tight-binding model, which can produce rather precise electronic bands and Fermi surfaces, hence can serve as an appropriate model to further study the superconducting mechanism and paring symmetry in trilayer La$_4$Ni$_3$O$_{10}$.
description: 8 pages, 10 figures
Additional file 1 of Review on epidemiology, disease burden, and treatment patterns of IgA nephropathy in select APAC countries
Creators: name: Zaidi, Omer
name: Du, Fen
name: Tang, Zhaoli
name: Bhattacharjee, Sandipan
name: Pareja, Kristin
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: Supplementary Material 1
Sub-Lorentzian extremals defined by an antinorm
Creators: name: Podobryaev, A. V.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Optimization and Control (math.OC)
subject: Differential Geometry (math.DG)
subject: FOS: Mathematics
subject: 53C50, 53C30, 49J15

description: We consider a left-invariant (sub-)Lorentzian structure on a Lie group. We assume that this structure is defined by a closed convex salient cone in the corresponding Lie algebra and a continuous antinorm associated with this cone. We derive the Hamiltonian system for (sub-)Lorentzian extremals and give conditions under that normal extremal trajectories keep their causal type. Tangent vectors of abnormal extremal trajectories are either light-like or tangent vectors of sub-Riemannian extremal trajectories for the sub-Riemannian distribution spanned by the cone.
description: 11 pages
DHJ913410 Supplemental Material2 - Supplemental material for Iterative four-phase development of a theory-based digital behaviour change intervention to reduce occupational sedentary behaviour
Creators: name: Stephenson, Aoife
name: Garcia-Constantino, Matias
name: McDonough, Suzanne M
name: Murphy, Marie H
name: Nugent, Chris D
name: Mair, Jacqueline L
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 111708 Health and Community Services
subject: FOS: Health sciences
subject: Cardiology
subject: 110306 Endocrinology
subject: FOS: Clinical medicine
subject: 110308 Geriatrics and Gerontology
subject: 111099 Nursing not elsewhere classified
subject: 111299 Oncology and Carcinogenesis not elsewhere classified
subject: 111702 Aged Health Care
subject: 111799 Public Health and Health Services not elsewhere classified
subject: 99999 Engineering not elsewhere classified
subject: FOS: Other engineering and technologies
subject: Anthropology
subject: FOS: Sociology
subject: 200299 Cultural Studies not elsewhere classified
subject: FOS: Other humanities
subject: 89999 Information and Computing Sciences not elsewhere classified
subject: FOS: Computer and information sciences
subject: 150310 Organisation and Management Theory
subject: FOS: Economics and business
subject: Science Policy
subject: 160512 Social Policy
subject: FOS: Political science
subject: Sociology

description: Supplemental material, DHJ913410 Supplemental Material2 for Iterative four-phase development of a theory-based digital behaviour change intervention to reduce occupational sedentary behaviour by Aoife Stephenson, Matias Garcia-Constantino, Suzanne M McDonough, Marie H Murphy, Chris D Nugent and Jacqueline L Mair in Digital Health
Additional file 1 of Implementation of an antimicrobial stewardship program for urinary tract infections in long-term care facilities: a cluster-controlled intervention study
Creators: name: König, Elisabeth
name: Kriegl, Lisa
name: Pux, Christian
name: Uhlmann, Michael
name: Schippinger, Walter
name: Avian, Alexander
name: Krause, Robert
name: Zollner-Schwetz, Ines
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Developmental Biology
subject: Cancer

description: Supplementary Material 1
SturtzSreetharan,SuppA.rev - Citizen Sociolinguistics: A Data Collection Approach for Hard-to-capture Naturally Occurring Language Data
Creators: name: SturtzSreetharan, Cindi
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 160807 Sociological Methodology and Research Methods
subject: FOS: Sociology

description: SturtzSreetharan,SuppA.rev for Citizen Sociolinguistics: A Data Collection Approach for Hard-to-capture Naturally Occurring Language Data by Cindi SturtzSreetharan in Field Methods
Additional file 1 of “Echoes of a dark past” is a history of maternal childhood maltreatment a perinatal risk factor for pregnancy and postpartum trauma experiences? A longitudinal study
Creators: name: Mackle, Tracey
name: Colodro-Conde, Lucía
name: de Dassel, Therese
name: Braun, Anastasia
name: Pope, Adele
name: Bennett, Elizabeth
name: Kothari, Alka
name: Bruxner, George
name: Medland, Sarah E.
name: Patterson, Sue
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Cell Biology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 1.
Designing an exploratory phase 2b platform trial in NASH with correlated, co-primary binary endpoints
Creators: name: Meyer, Elias Laurin
name: Mesenbrink, Peter
name: Di Prospero, Nicholas A.
name: Pericàs, Juan M.
name: Glimm, Ekkehard
name: Ratziu, Vlad
name: Sena, Elena
name: König, Franz
Publisher: name: arXiv
Year: 2022
Subjects: subject: Applications (stat.AP)
subject: FOS: Computer and information sciences

description: Non-alcoholic steatohepatitis (NASH) is the progressive form of nonalcoholic fatty liver disease (NAFLD) and a disease with high unmet medical need. Platform trials provide great benefits for sponsors and trial participants in terms of accelerating drug development programs. In this article, we describe some of the activities of the EU-PEARL consortium (EU Patient-cEntric clinicAl tRial pLatforms) regarding the use of platform trials in NASH, in particular the proposed trial design, decision rules and simulation results. For a set of assumptions, we present the results of a simulation study recently discussed with two health authorities and the learnings from these meetings from a trial design perspective. Since the proposed design uses co-primary binary endpoints, we furthermore discuss the different options and practical considerations for simulating correlated binary endpoints.
Peripheral artery disease recognition, diagnosis, and management in general practice in the Republic of Ireland and England: an online survey
Creators: name: Konya, Judit
name: TJ McDonagh, Sinead
name: Hayes, Peter
name: Debus, Sebastian
name: Aboyans, Victor
name: Clark, Christopher E.
name: investigators, EuroPAD
Publisher: name: University of Limerick
Year: 2024
Subjects: classificationCode: 42
subject: Health sciences
subject: FOS: Health sciences

description: Background: Peripheral artery disease (PAD) is common and associated with future cardiovascular events. PAD is underdiagnosed, which limits opportunities to address secondary prevention of cardiovascular disease. It is unknown how closely guidelines for detection of PAD are followed in primary care. Aim: To survey GPs' attitudes to diagnosis and follow-up of patients with PAD. Design & setting: Online survey of GPs in England and the Republic of Ireland (RoI). Method: GPs’ approaches to management of PAD were assessed using likelihood ratings (scales of 0–10) and discrete questions. Findings were summarised as proportions, or median and interquartile ranges (IQR). Results: In total, 111 responses were analysed; 68 (61%) from England and 43 (39%) from the RoI. Considering a hypothetical patient at risk of PAD, likelihood of GPs enquiring about PAD symptoms (leg pains: 3/10 or erectile dysfunction: 2/10) was low. GPs in the RoI compared with GPs in England more often examined the heart (10/10 versus 7/10) or carotid vessels (5/10 versus 1/10). Lower limb pulses were palpated in response to symptoms or signs of PAD. In England 25% of practitioners, and in the RoI 55% of practitioners, reported that they do not measure ankle-brachial index (ABI). Conclusion: Currently, detection of PAD is generally triggered by 'classical' leg claudication symptoms, while known vascular risk factors appear to elicit little consideration. ABI measurement is not performed by many practitioners, suggesting that a proportion of vascular referrals must be based on history and examination findings alone. Opportunities to recognise PAD are missed.
Equivariant $K$-theory of flag Bott manifolds of general Lie type
Creators: name: Paul, Bidhan
name: Uma, Vikraman
Publisher: name: arXiv
Year: 2022
Subjects: subject: Algebraic Topology (math.AT)
subject: K-Theory and Homology (math.KT)
subject: FOS: Mathematics
subject: 55N15 14M15(Primary) 19L99(Secondary)

description: The aim of this paper is to describe the equivariant and ordinary
 Grothendieck ring and the equivariant and ordinary topological
 $K$-ring of flag Bott manifolds of general Lie type. This will
 generalize the results on the equivariant and ordinary cohomology of
 flag Bott manifolds of general Lie type due to Kaji Kuroki Lee and
 Suh.
description: 26 pages