Additional file 4 of Range and niche expansion through multiple interspecific hybridization: a genotyping by sequencing analysis of Cherleria (Caryophyllaceae)
Creators: name: Moore, Abigail J.
name: Messick, Jennifer A.
name: Kadereit, Joachim W.
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: FOS: Biological sciences

description: Additional file 4: Fig. S1. Comparison of the tree topologies from the different analyses. Bootstrap values &gt; 70% are above the branches. In cases where the species were not forced to be monophyletic (S1a, S1b, S1c, S1f), bootstrap values for species are also shown. RAxML analysis of nrDNA ITS and ETS data (S1a, full tree in Fig. 2), population tree from the SVDQuartets analysis of the Individual dataset (S1b, full tree in Fig. 3), RAxML analysis of Population dataset (S1c, full tree in Fig. S2), species tree from SVDQuartets analysis of Population dataset (S1d, full tree in Fig. S3), species tree from SVDQuartets analysis of Individual dataset (S1e, full tree in Fig. S4), and population tree from SVDQuartets analysis of Population dataset (S1f, full tree in Fig. S5). Taxon abbreviations are as follows: BA, Cherleria baldaccii; BA231: population 231 of C. baldaccii; BA232: population 232 of C. baldaccii; CA: French populations of C. capillacea; CA233: Albanian population of C. capillacea; DI: C. dirphya; DO: C. doerfleri; GA: C. garckeana; LN: C. langii; LLO, C. laricifolia; PA: C. parnonia; RU: C. rupestris; SE: C. sedoides; and WE: C. wettsteinii. Fig. S2. Maximum likelihood phylogeny from the RAxML analysis of the Population dataset. Bootstrap values from 500 bootstrap replicates are above the branches; only values above 70% are shown. Fig. S3. Species tree from the SVDQuartets analysis of the Population dataset. Bootstrap values from 1000 bootstrap replicates are above the branches; only values above 70% are shown. Fig. S4. Species tree from the SVDQuartets analysis of the Individual dataset. Bootstrap values from 1000 bootstrap replicates are above the branches; only values above 70% are shown. Fig. S5. Population tree from SVDQuartets analysis of the Population dataset. Bootstrap values from 1000 bootstrap replicates are above the branches; only values above 70% are shown. Fig. S6. Network from the SplitsTree analysis of the Taxon dataset. Bootstrap values from 1000 bootstrap replicates are shown, together with lines indicating which taxa are involved; only values above 70% are shown. Fig. S7. Network from the SplitsTree analysis of the Population dataset. Bootstrap values from 1000 bootstrap replicates are shown, together with lines indicating which populations are involved; only values above 70% are shown. Fig. S8. Representative plots from the adegenet analyses of all plants combined. The plants were divided into two clusters (S8a), three clusters (S8b), four clusters (S8c), five clusters (S8d), six clusters (S8e), and seven clusters (S8f). Fig. S9. Representative plot from the adegenet analysis of Cherleria langii alone. The plants were divided into two groups. Fig. S10. Representative plots from the adegenet analyses of Cherleria laricifolia alone. The plants were divided into two (S10a) and three (S10b) clusters. Fig. S11. Plot from the fineRADstructure analysis of Cherleria laricifolia alone. Fig. S12. Plot from the fineRADstructure analysis of Cherleria langii alone.