cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 3: of Implementation of massive sequencing in the genetic diagnosis of hereditary cancer syndromes: diagnostic performance in the Hereditary Cancer Programme of the Valencia Community (FamCan-NGS)
Creators: name: Ramírez-Calvo, Marta
name: García-Casado, Zaida
name: Fernández-Serra, Antonio
name: Juan, Inmaculada
name: Palanca, Sarai
name: Oltra, Silvestre
name: Soto, José
name: Castillejo, Adela
name: Barbera, Víctor M
name: Juan-Fita, Ma
name: Segura, Ángel
name: Chirivella, Isabel
name: Sánchez, Ana
name: Tena, Isabel
name: Chaparro, Carolina
name: Salas, Dolores
name: López-Guerrero, José
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Table S3: Sequencing metrics of analyzed samples. (DOCX 45 kb)
Additional file 4: of Identification of new signalling peptides through a genome-wide survey of 250 fungal secretomes
Creators: name: Marquer, Morgane Le
name: HĂŠlĂ¨Ne San Clemente
name: Roux, Christophe
name: Savelli, Bruno
name: Frey, Nicolas Frei Dit
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology

description: Figure S1. Scheme depicting the informatic pipeline used to identify KEX2 processed repeat proteins (KEPs). (PDF 212 kb)
United States clinical practice experience with eculizumab in myasthenia gravis: symptoms, function, and immunosuppressant therapy use
Creators: name: Klink, Andrew J.
name: Muppidi, Srikanth
name: Habib, Ali A.
name: Nowak, Richard J.
name: Parthan, Anju
name: Howard, James F.
name: Balanean, Alexandrina
name: Gajra, Ajeet
name: Sader, S. Chloe
Publisher: name: Springer Nature
Year: 2024

description: Background/objectives The phase 3 REGAIN study and its open-label extension demonstrated the efficacy of the complement C5 inhibitor eculizumab in patients with treatment-refractory, acetylcholine receptor antibody–positive generalized myasthenia gravis (gMG). The aim of the ELEVATE study was to assess the effectiveness of eculizumab in clinical practice in adults with MG in the United States. Methods A retrospective chart review was conducted in adults with MG who initiated eculizumab treatment between October 23, 2017 and December 31, 2019. Outcomes assessed before and during eculizumab treatment using a pre- versus post-treatment study design included Myasthenia Gravis–Activities of Daily Living (MG-ADL) total scores; minimal symptom expression (MSE); physician impression of clinical change; minimal manifestation status (MMS); and concomitant medication use. Results In total, 119 patients were included in the study. A significant reduction was observed in mean MG-ADL total score, from 8.0 before eculizumab initiation to 5.4 at 3 months and to 4.7 at 24 months after eculizumab initiation (both p < 0.001). At 24 months after eculizumab initiation, MSE was achieved by 19% of patients. MMS or better was achieved by 30% of patients at 24 months. Additionally, 64% of patients receiving prednisone at eculizumab initiation had their prednisone dosage reduced during eculizumab treatment and 13% discontinued prednisone; 32% were able to discontinue nonsteroidal immunosuppressant therapy. Discussion Eculizumab treatment was associated with sustained improvements in MG-ADL total scores through 24 months in adults with MG. Prednisone dosage was reduced in approximately two-thirds of patients, suggesting a steroid-sparing effect for eculizumab.
Critical behaviour of the dilute O(n), Izergin-Korepin and dilute $A_L$ face models: Bulk properties
Creators: name: Zhou, Y. -K.
name: Batchelor, M. -T.
Publisher: name: arXiv
Year: 1996
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: The analytic, nonlinear integral equation approach is used to calculate the finite-size corrections to the transfer matrix eigen-spectra of the critical dilute O(n) model on the square periodic lattice. The resulting bulk conformal weights extend previous exact results obtained in the honeycomb limit and include the negative spectral parameter regimes. The results give the operator content of the 19-vertex Izergin-Korepin model along with the conformal weights of the dilute $A_L$ face models in all four regimes.
description: 23 pages, no ps figures, latex file, to appear in NPB
Dynamic Ecological System Analysis
Creators: name: Coskun, Huseyin
Publisher: name: arXiv
Year: 2018
Subjects: subject: Systems and Control (eess.SY)
subject: Dynamical Systems (math.DS)
subject: Optimization and Control (math.OC)
subject: Quantitative Methods (q-bio.QM)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Mathematics
subject: FOS: Biological sciences
subject: 34A34, 35A24, 37C60, 37N25, 37N40, 70G60, 91B74, 92B20, 92C42, 92D30, 92D40, 93C15, 94A15

description: This article develops a new mathematical method for holistic analysis of nonlinear dynamic compartmental systems through the system decomposition theory. The method is based on the novel dynamic system and subsystem partitioning methodologies through which compartmental systems are decomposed to the utmost level. The dynamic system and subsystem partitioning enable tracking the evolution of the initial stocks, environmental inputs, and intercompartmental system flows, as well as the associated storages derived from these stocks, inputs, and flows individually and separately within the system. Moreover, the transient and the dynamic direct, indirect, acyclic, cycling, and transfer (diact) flows and associated storages transmitted along a given flow path or from one compartment, directly or indirectly, to any other are analytically characterized, systematically classified, and mathematically formulated. Further, the article develops a dynamic technique based on the diact transactions for the quantitative classification of interspecific interactions and the determination of their strength within food webs. Major concepts and quantities of the current static network analyses are also extended to nonlinear dynamic settings and integrated with the proposed dynamic measures and indices within the proposed unifying mathematical framework. Therefore, the proposed methodology enables a holistic view and analysis of ecological systems. We consider that this methodology brings a novel complex system theory to the service of urgent and challenging environmental problems of the day and has the potential to lead the way to a more formalistic ecological science.
description: 45 pages, 15 figures. arXiv admin note: substantial text overlap with arXiv:1811.11885, arXiv:1811.10423
Labeo manasseeae Liyandja & Stiassny 2023, new species
Creators: name: Liyandja, Tobit L. D.
name: Stiassny, Melanie L. J.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Cypriniformes
Cyprinidae
Labeo
Labeo manasseeae

description: Labeo manasseeae, new species   Figures 7, 8; table 2
description: Published as part of Liyandja, Tobit L. D. & Stiassny, Melanie L. J., 2023, Description of two new Labeo (Labeoninae; Cyprinidae) endemic to the Lulua River in the Democratic Republic of Congo (Kasai ecoregion); a hotspot of fish diversity in the Congo basin, pp. 1-24 in American Museum Novitates 2023 (3999) on page 14, DOI: 10.1206/3999.1, http://zenodo.org/record/8006129
The Origins of the Circumgalactic Medium in the FIRE Simulations
Creators: name: Hafen, Z.
name: Faucher-Giguere, C. -A.
name: Angles-Alcazar, D.
name: Stern, J.
name: Keres, D.
name: Hummels, C.
name: Esmerian, C.
name: Garrison-Kimmel, S.
name: El-Badry, K.
name: Wetzel, A.
name: Chan, T. K.
name: Hopkins, P. F.
name: Murray, N.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We use a particle tracking analysis to study the origins of the circumgalactic medium (CGM), separating it into (1) accretion from the intergalactic medium (IGM), (2) wind from the central galaxy, and (3) gas ejected from other galaxies. Our sample consists of 21 FIRE-2 simulations, spanning the halo mass range log(Mh/Msun) ~ 10-12 , and we focus on z=0.25 and z=2. Owing to strong stellar feedback, only ~L* halos retain a baryon mass >~50% of their cosmic budget. Metals are more efficiently retained by halos, with a retention fraction >~50%. Across all masses and redshifts analyzed >~60% of the CGM mass originates as IGM accretion (some of which is associated with infalling halos). Overall, the second most important contribution is wind from the central galaxy, though gas ejected or stripped from satellites can contribute a comparable mass in ~L* halos. Gas can persist in the CGM for billions of years, resulting in well-mixed halo gas. Sight lines through the CGM are therefore likely to intersect gas of multiple origins. For low-redshift ~L* halos, cool gas (T<10^4.7 K) is distributed on average preferentially along the galaxy plane, however with strong halo-to-halo variability. The metallicity of IGM accretion is systematically lower than the metallicity of winds (typically by >~1 dex), although CGM and IGM metallicities depend significantly on the treatment of subgrid metal diffusion. Our results highlight the multiple physical mechanisms that contribute to the CGM and will inform observational efforts to develop a cohesive picture.
description: 23 pages, 22 figures. Minor revisions from previous version. Online interactive visualizations available at zhafen.github.io/CGM-origins and zhafen.github.io/CGM-origins-pathlines
New Evidence of Earthquake Precursory Phenomena in the 17 Jan. 1995 Kobe Earthquake, Japan
Creators: name: Johansen, A.
name: Saleur, H.
name: Sornette, D.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Condensed Matter (cond-mat)
subject: Geophysics (physics.geo-ph)
subject: FOS: Physical sciences

description: Significant advances, both in the theoretical understanding of rupture processes in heterogeneous media and in the methodology for characterizing critical behavior, allows us to reanalyze the evidence for criticality and especially log-periodicity in the previously reported chemical anomalies that preceded the Kobe earthquake. The ion ($Cl^-$, $K^+$, $Mg^{++}$, $NO_3^{-}$ and $SO_4^{--}$) concentrations of ground-water issued from deep wells located near the epicenter of the 1995 Kobe earthquake are taken as proxies for the cumulative damage preceding the earthquake. Using both a parametric and non-parametric analysis, the five data sets are compared extensively to synthetic time series. The null-hypothesis that the patterns documented on these times series result from noise decorating a simple power law is rejected with a very high confidence level.
description: 8 pages and 2 figures submitted to GRL
Fecal Bacteria Contamination of Floodwaters and a Coastal Waterway From Tidally‐Driven Stormwater Network Inundation
Creators: name: Hino, M.
name: Carr, M. M.
name: Nelson, N. G.
name: Da Silva, G.
name: Gamewell, C.
name: Gold, A. C.
name: Harris, A.
name: Sauers, N.
name: Anarde, K.
Publisher: name: American Geophysical Union (AGU)
Year: 2024

description: Inundation of coastal stormwater networks by tides is widespread due to sea-level rise (SLR). The water quality risks posed by tidal water rising up through stormwater infrastructure (pipes and catch basins), out onto roadways, and back out to receiving water bodies is poorly understood but may be substantial given that stormwater networks are a known source of fecal contamination. In this study, we (a) documented temporal variation in concentrations of Enterococcus spp. (ENT), the fecal indicator bacteria standard for marine waters, in a coastal waterway over a 2-month period and more intensively during two perigean spring tide periods, (b) measured ENT concentrations in roadway floodwaters during tidal floods, and (c) explained variation in ENT concentrations as a function of tidal inundation, antecedent rainfall, and stormwater infrastructure using a pipe network inundation model and robust linear mixed effect models. We find that ENT concentrations in the receiving waterway vary as a function of tidal stage and antecedent rainfall, but also site-specific characteristics of the stormwater network that drains to the waterway. Tidal variables significantly explain measured ENT variance in the waterway, however, runoff drove higher ENT concentrations in the receiving waterway. Samples of floodwaters on roadways during both perigean spring tide events were limited, but all samples exceeded the threshold for safe public use of recreational waters. These results indicate that inundation of stormwater networks by tides could pose public health hazards in receiving water bodies and on roadways, which will likely be exacerbated in the future due to continued SLR.
On Throughput Optimization and Bound Analysis in Cache-Enabled Fiber-Wireless Networks
Creators: name: Gu, Zhuojia
name: Lu, Hancheng
name: Zhu, Zuqing
Publisher: name: arXiv
Year: 2019
Subjects: subject: Networking and Internet Architecture (cs.NI)
subject: FOS: Computer and information sciences

description: With the dense deployment of millimeter wave (mmWave) front ends and popularization of bandwidth-intensive applications, shared backhaul in fiber-wireless (FiWi) networks is still facing a bandwidth crunch. To alleviate the backhaul pressure, in this paper, caching capability is enabled at the edge of FiWi networks, i.e., optical network unit access points (ONU-APs). On the other hand, as both power budget and backhaul bandwidth in FiWi networks are constrained, it is challenging to properly leverage power for caching and that for wireless transmission to achieve superior system performance. As caching has a significant impact on resource allocation, we reconsider performance optimization and analysis in cache-enabled FiWi networks. Firstly, in the cache-enabled FiWi network with mmWave, we formulate the joint power allocation and caching problem, with the goal to maximize the downlink throughput. A two-stage algorithm is then proposed to solve the problem. Secondly, to investigate the theoretical capacity of the cache-enabled FiWi network with mmWave, we derive an upper bound of the downlink throughput by analyzing properties of the average rate of wireless links. Particularly, we show that appropriate power allocation for wireless transmission and caching at ONU-APs is essential to achieve higher throughput. The numerical and simulation results validate our theoretical analysis and demonstrate the proposed algorithm can approach the analytical upper bound.
description: 15 pages, 11 figures; published in IEEE Transactions on Vehicular Technology
Optical phonons along the c axis of YBa_2Cu_3O_{6+x}, for x=0.5 -> 0.95
Creators: name: Homes, C. C.
name: Timusk, T.
name: Bonn, D. A.
name: Liang, R.
name: Hardy, W. N.
Publisher: name: arXiv
Year: 1995
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: The c-axis polarized phonon spectra of single crystals of YBCO_{6+x} have been measured for the doping range x=0.5 -> 0.95, between 10 K and 300 K. The low background electronic conductivity, determined by Kramers-Kronig analysis of the reflectance, leads to a rich phonon structure. With decreased doping the five normally-active B_{1u} modes broaden and the high-frequency apical oxygen mode splits into two components. We associate the higher of these with the two-fold coordinated copper-oxygen sticks. The 155 cm^{-1} low-frequency mode, which involves the apical and chain-oxygens, splits into at least three components with decreasing doping. Some phonon anomalies which occur near T_c in the highly-doped material occur well above T_c in the oxygen-reduced systems. An unusual broad phonon band develops in the normal state at approx 400 cm^{-1}, which becomes more intense at low doping and low temperatures, borrowing oscillator strength from apical and plane oxygen modes resulting in a major transformation of the phonon spectrum below approx 150 K.
description: 13 pages with 9 figures and 2 tables; this version is an almost exact copy of the article as it appeared in CJP and may be used as an electronic reprint
Additional file 1 of Panax notoginseng saponins prevent dementia and oxidative stress in brains of SAMP8 mice by enhancing mitophagy
Creators: name: Yang, Yingying
name: Chen, Wenya
name: Lin, Zhenmei
name: Wu, Yijing
name: Li, Yuqing
name: Xia, Xing
Publisher: name: figshare
Year: 2024
Subjects: Biochemistry
Medicine
Cell Biology
Molecular Biology
Neuroscience
Chemical Sciences not elsewhere classified
Mental Health

description: Supplementary Material 1: Supplement figures of western blotting
Strong Equivalence Principle and Gravitational Wave Polarizations in Horndeski Theory
Creators: name: Hou, Shaoqi
name: Gong, Yungui
Publisher: name: arXiv
Year: 2018
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: The relative acceleration between two nearby particles moving along accelerated trajectories is studied, which generalizes the geodesic deviation equation. The polarization content of the gravitational wave in Horndeski theory is investigated by examining the relative acceleration between two self-gravitating particles. It is found out that the longitudinal polarization exists no matter whether the scalar field is massive or not. It would be still very difficult to detect the enhanced longitudinal polarization with the interferometer, as the violation of the strong equivalence principle of mirrors used by interferometers is extremely small. However, the pulsar timing array is promised to relatively easily detect the effect of the violation as neutron stars have large self-energy. The advantage of using this method to test the violation of the strong equivalence principle is that neutron stars are not required to be present in the binary systems.
description: 25 pages, 2 figures. Matched the published version
title: ADCO, Troisième cartulaire de Saint-Étienne de Dijon (XVIe), Cart. 23 (G 127), 310 folios, f. 00292
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2011
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Troisième cartulaire de Saint-Étienne de Dijon (XVIe), Archives départementales de la Côte-d'Or, Cart. 23 (G 127), 310 folios, f. 00292, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Troisième cartulaire de Saint-Étienne de Dijon (XVIe), Archives départementales de la Côte-d'Or, Cart. 23 (G 127), 310 folios, f. 00292, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
Dark Matter with Time-Dependent Mass
Creators: name: Anderson, Greg W.
name: Carroll, Sean M.
Publisher: name: arXiv
Year: 1997
Subjects: subject: Astrophysics (astro-ph)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We propose a simple model in which the cosmological dark matter consists of particles whose mass increases with the scale factor of the universe. The particle mass is generated by the expectation value of a scalar field which does not have a stable vacuum state, but which is effectively stabilized by the rest energy of the ambient particles. As the universe expands, the density of particles decreases, leading to an increase in the vacuum expectation value of the scalar (and hence the mass of the particle). The energy density of the coupled system of variable-mass particles (``vamps'') redshifts more slowly than that of ordinary matter. Consequently, the age of the universe is larger than in conventional scenarios.
description: 14 pages, 2 figures; based on a talk by SMC at Cosmo-97, September 1997, Ambleside, England. Important references added
Additional file 2: of Implementation of massive sequencing in the genetic diagnosis of hereditary cancer syndromes: diagnostic performance in the Hereditary Cancer Programme of the Valencia Community (FamCan-NGS)
Creators: name: Ramírez-Calvo, Marta
name: García-Casado, Zaida
name: Fernández-Serra, Antonio
name: Juan, Inmaculada
name: Palanca, Sarai
name: Oltra, Silvestre
name: Soto, José
name: Castillejo, Adela
name: Barbera, Víctor M
name: Juan-Fita, Ma
name: Segura, Ángel
name: Chirivella, Isabel
name: Sánchez, Ana
name: Tena, Isabel
name: Chaparro, Carolina
name: Salas, Dolores
name: López-Guerrero, José
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 60506 Virology

description: Table S2: Validation designed primer sequences. (DOCX 32 kb)
Non-commutative NLS-type hierarchies: dressing & solutions
Creators: name: Doikou, Anastasia
name: Findlay, Iain
name: Sklaveniti, Spyridoula
Publisher: name: arXiv
Year: 2018
Subjects: subject: Mathematical Physics (math-ph)
subject: High Energy Physics - Theory (hep-th)
subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: FOS: Physical sciences

description: We consider the generalized matrix non-linear Schrodinger (NLS) hierarchy. By employing the universal Darboux-dressing scheme we derive solutions for the hierarchy of integrable PDEs via solutions of the matrix Gelfand-Levitan-Marchenko equation, and we also identify recursion relations that yield the Lax pairs for the whole matrix NLS-type hierarchy. These results are obtained considering either matrix-integral or general $n^{th}$ order matrix-differential operators as Darboux-dressing transformations. In this framework special links with the Airy and Burgers equations are also discussed. The matrix version of the Darboux transform is also examined leading to the non-commutative version of the Riccati equation. The non-commutative Riccati equation is solved and hence suitable conserved quantities are derived. In this context we also discuss the infinite dimensional case of the NLS matrix model as it provides a suitable candidate for a quantum version of the usual NLS model. Similarly, the non-commutitave Riccati equation for the general dressing transform is derived and it is naturally equivalent to the one emerging from the solution of the auxiliary linear problem.
description: 29 pages, LaTex. Minor modifications
Local density of states in the vortex lattice in a type II superconductor
Creators: name: Ichioka, Masanori
name: Hayashi, Nobuhiko
name: Machida, Kazushige
Publisher: name: arXiv
Year: 1996
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: Local density of states (LDOS) in the triangular vortex lattice is investigated based on the quasi-classical Eilenberger theory. We consider the case of an isotropic s-wave superconductor with the material parameter appropriate to NbSe_2. At a weak magnetic field, the spatial variation of the LDOS shows cylindrical structure around a vortex core. On the other hand, at a high field where the core regions substantially overlap each other, the LDOS is sixfold star-shaped structure due to the vortex lattice effect. The orientation of the star coincides with the experimental data of the scanning tunneling microscopy. That is, the ray of the star extends toward the nearest-neighbor (next nearest-neighbor) vortex direction at higher (lower) energy.
description: 10 pages, RevTex, 32 figures
A perturbative approach to non-linearities in the information carried by a two layer neural network
Creators: name: Korutcheva, E.
name: Del Prete, V.
name: Nadal, J. -P.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We evaluate the mutual information between the input and the output of a two layer network in the case of a noisy and non-linear analogue channel. In the case where the non-linearity is small with respect to the variability in the noise, we derive an exact expression for the contribution to the mutual information given by the non-linear term in first order of perturbation theory. Finally we show how the calculation can be simplified by means of a diagrammatic expansion. Our results suggest that the use of perturbation theories applied to neural systems might give an insight on the contribution of non-linearities to the information transmission and in general to the neuronal dynamics.
description: Accepted as a preprint of ICTP, Trieste
Molecular, Metabolic, and Subcellular Mapping of the Tumor Immune Microenvironment via 3D Targeted and Non-Targeted Multiplex Multi-Omics Analyses
Creators: name: Stolley, Danielle L.
name: Ayyadhury, Shamini
name: Mok, Samuel C.
name: Burks, Jared K.
name: Basi, Akshay V.
name: Lawson, Barrett C.
name: Yates, Melinda S.
name: Ferri-Borgogno, Sammy
name: Seeley, Erin H.
name: McKee, Trevor D.
name: Lu, Karen H.
name: Gamal, Basant T.
name: Gomez, Javier A.
name: Birrer, Michael J.
Publisher: name: MDPI
Year: 2024

description: Most platforms used for the molecular reconstruction of the tumor-immune microenvironment (TIME) of a solid tumor fail to explore the spatial context of the three-dimensional (3D) space of the tumor at a single-cell resolution, and thus lack information about cell-cell or cell-extracellular matrix (ECM) interactions. To address this issue, a pipeline which integrated multiplex spatially resolved multi-omics platforms was developed to identify crosstalk signaling networks among various cell types and the ECM in the 3D TIME of two FFPE (formalin-fixed paraffin embedded) gynecologic tumor samples. These platforms include non-targeted mass spectrometry imaging (glycans, metabolites, and peptides) and Stereo-seq (spatial transcriptomics) and targeted seqIF (IHC proteomics). The spatially resolved imaging data in a two- and three-dimensional space demonstrated various cellular neighborhoods in both samples. The collection of spatially resolved analytes in a voxel (3D pixel) across serial sections of the tissue was also demonstrated. Data collected from this analytical pipeline were used to construct spatial 3D maps with single-cell resolution, which revealed cell identity, activation, and energized status. These maps will provide not only insights into the molecular basis of spatial cell heterogeneity in the TIME, but also novel predictive biomarkers and therapeutic targets, which can improve patient survival rates.
title: There and Back Again, or, The Never-Ending Quest to Balance the Personal and Scalable in Online Instruction
Creators: name: Homol, Lindley
Publisher: name: University of Massachusetts Amherst
Year: 2023
Subjects: subject: Teaching and Learning
subject: Library and Information Science

description: Online learning librarians and liaison librarians to online programs must constantly balance the competing demands of providing in-depth, individualized instruction to online learners and reaching a majority of online students with library instruction. Librarians embedded in online courses know how difficult it is to scale meaningful instruction, and may feel forced to choose between reaching a majority of online learners with some form of library instruction or reaching fewer online learners through more targeted outreach. As a liaison to a predominantly-online graduate program in Education, I have worked through several iterations of instructional course support that have varied in their reach and personalization, including virtual consultations, asynchronous tutorials, course-based webinars and interactive online workshops. Through the action research cycle, I analyzed each new iteration to judge its relative success at balancing the competing demands of scale and personalization. In this session, I will discuss the technology and tools used to implement each of the online instructional offerings, as well as additional low-cost technology options for librarians looking to implement these programs at their own institutions. I will describe the pros and cons of each option as well as potential learner groups who might benefit most from that offering. I will also detail how effective each method was with students in the online graduate Education program and reasons for its relative success or failure. Finally, I will discuss the relative reach and time investment of each method so attendees can evaluate which blend of instructional offerings might be the best fit for their own learners or programs. By the end of this session, attendees will be able to... -Describe multiple instructional methods for balancing scale and personalization -Identify groups of learners at their own institutions who could benefit from each instructional method -List the necessary tools and technologies for each instructional method
Coherent vs incoherent pairing in 2D systems near magnetic instability
Creators: name: Abanov, Ar.
name: Chubukov, Andrey V.
name: Finkel'stein, A. M.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We study the superconductivity in 2D fermionic systems near antiferromagnetic instability, assuming that the pairing is mediated by spin fluctuations. This pairing involves fully incoherent fermions and diffusive spin excitations. We show that the competition between fermionic incoherence and strong pairing interaction yields the pairing instability temperature $T_{ins}$ which increases and saturates as the magnetic correlation length $ξ\to \infty$. We argue that in this quantum-critical regime the pairing problem is qualitatively different from the BCS one.
description: 7 pages, 2 figures
On the nature of the correlated insulator states in twisted bilayer graphene
Creators: name: Xie, Ming
name: MacDonald, Allan H.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We use self-consistent Hartree-Fock calculations performed in the full $π$-band Hilbert space to assess the nature of the recently discovered correlated insulator states in magic-angle twisted bilayer graphene (TBG). We find that gaps between the flat conduction and valence bands open at neutrality over a wide range of twist angles, sometimes without breaking the system's valley projected ${\cal C}_{2}{\cal T}$ symmetry. Broken spin/valley flavor symmetries then enable gapped states to form not only at neutrality, but also at total moiré band filling $n = \pm p/4$ with integer $p = 1, 2, 3$, when the twist angle is close to the magic value at which the flat bands are most narrow. Because the magic-angle flat band quasiparticles are isolated from remote band quasiparticles only for effective dielectric constants larger than $ \sim 20$, the gapped states do not necessarily break \CT symmetry and as a consequence the insulating states at $n = \pm 1/4$ and $n = \pm 3/4$ need not exhibit a quantized anomalous Hall effect.
description: 5 pages plus supplemental material. Commenst are welcomed
title: ADCO, Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome VI, Cart. 190 (11 H 75), 316 folios, f. 0233v
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome VI, Archives départementales de la Côte-d'Or, Cart. 190 (11 H 75), 316 folios, f. 0233v, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome VI, Archives départementales de la Côte-d'Or, Cart. 190 (11 H 75), 316 folios, f. 0233v, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Key subphenotypes of bipolar disorder are differentially associated with polygenic liabilities for bipolar disorder, schizophrenia, and major depressive disorder
Creators: name: Jones, Lisa
name: Di Florio, Arianna
name: Lichtenstein, Paul
name: Smedler, Erik
name: Karlsson, Robert
name: Lu, Yi
name: Sullivan, Patrick F.
name: Craddock, Nick
name: Landén, Mikael
name: Jones, Ian
name: Gordon-Smith, Katherine
name: Bergen, Sarah E.
name: Jonsson, Lina
name: Song, Jie
Publisher: name: Springer Nature
Year: 2024

description: Bipolar disorder (BD) features heterogenous clinical presentation and course of illness. It remains unclear how subphenotypes associate with genetic loadings of BD and related psychiatric disorders. We investigated associations between the subphenotypes and polygenic risk scores (PRS) for BD, schizophrenia, and major depressive disorder (MDD) in two BD cohorts from Sweden (N = 5180) and the UK (N = 2577). Participants were assessed through interviews and medical records for inter-episode remission, psychotic features during mood episodes, global assessment of functioning (GAF, function and symptom burden dimensions), and comorbid anxiety disorders. Meta-analyses based on both cohorts showed that inter-episode remission and GAF-function were positively correlated with BD-PRS but negatively correlated with schizophrenia-PRS (SCZ-PRS) and MDD-PRS. Moreover, BD-PRS was negatively, and MDD-PRS positively, associated with the risk of comorbid anxiety disorders. Finally, SCZ-PRS was positively associated with psychotic symptoms during mood episodes. Assuming a higher PRS of certain psychiatric disorders in cases with a positive family history, we further tested the associations between subphenotypes in index BD people and occurrence of BD, schizophrenia, or MDD in their relatives using Swedish national registries. BD patients with a relative diagnosed with BD had: (1) higher GAF and lower risk of comorbid anxiety than those with a relative diagnosed with schizophrenia or MDD, (2) lower risk of psychotic symptoms than those with a relative diagnosed with schizophrenia. Our findings shed light on the genetic underpinnings of the heterogeneity in clinical manifestations and course of illness in BD, which ultimately provide insights for developing personalized approaches to the diagnosis and treatment.
Additional file 2: of Identification of new signalling peptides through a genome-wide survey of 250 fungal secretomes
Creators: name: Marquer, Morgane Le
name: HĂŠlĂ¨Ne San Clemente
name: Roux, Christophe
name: Savelli, Bruno
name: Frey, Nicolas Frei Dit
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology

description: Table S2. Full description of the different KEPs identified in the pipeline. (PDF 260 kb)
Additional file 14: of Unexpected invasion of miniature inverted-repeat transposable elements in viral genomes
Creators: name: Zhang, Hua-Hao
name: Zhou, Qiu-Zhong
name: Wang, Ping-Lan
name: Xiong, Xiao-Min
name: Luchetti, Andrea
name: Raoult, Didier
name: Levasseur, Anthony
name: Santini, Sebastien
name: Abergel, Chantal
name: Legendre, Matthieu
name: Drezen, Jean-Michel
name: BĂŠliveau, Catherine
name: Cusson, Michel
name: Jiang, Shen-Hua
name: Bao, Hai-Ou
name: Sun, Cheng
name: Bureau, Thomas
name: Cheng, Peng-Fei
name: Han, Min-Jin
name: Zhang, Ze
name: Zhang, Xiao-Gu
name: Dai, Fang-Yin
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Marine Biology
subject: Cancer
subject: Plant Biology
subject: Virology

description: Table S7. The detail information of primers to amplify MITEs and their potential autonomous partner in viruses. (DOC 43Â kb)
Bonseyes AI Pipeline -- bringing AI to you. End-to-end integration of data, algorithms and deployment tools
Creators: name: de Prado, Miguel
name: Su, Jing
name: Saeed, Rabia
name: Keller, Lorenzo
name: Vallez, Noelia
name: Anderson, Andrew
name: Gregg, David
name: Benini, Luca
name: Llewellynn, Tim
name: Ouerhani, Nabil
name: and, Rozenn Dahyot
name: Pazos, Nuria
Publisher: name: arXiv
Year: 2019
Subjects: subject: Machine Learning (cs.LG)
subject: Distributed, Parallel, and Cluster Computing (cs.DC)
subject: Sound (cs.SD)
subject: Audio and Speech Processing (eess.AS)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: Next generation of embedded Information and Communication Technology (ICT) systems are collaborative systems able to perform autonomous tasks. The remarkable expansion of the embedded ICT market, together with the rise and breakthroughs of Artificial Intelligence (AI), have put the focus on the Edge as it stands as one of the keys for the next technological revolution: the seamless integration of AI in our daily life. However, training and deployment of custom AI solutions on embedded devices require a fine-grained integration of data, algorithms, and tools to achieve high accuracy. Such integration requires a high level of expertise that becomes a real bottleneck for small and medium enterprises wanting to deploy AI solutions on the Edge which, ultimately, slows down the adoption of AI on daily-life applications. In this work, we present a modular AI pipeline as an integrating framework to bring data, algorithms, and deployment tools together. By removing the integration barriers and lowering the required expertise, we can interconnect the different stages of tools and provide a modular end-to-end development of AI products for embedded devices. Our AI pipeline consists of four modular main steps: i) data ingestion, ii) model training, iii) deployment optimization and, iv) the IoT hub integration. To show the effectiveness of our pipeline, we provide examples of different AI applications during each of the steps. Besides, we integrate our deployment framework, LPDNN, into the AI pipeline and present its lightweight architecture and deployment capabilities for embedded devices. Finally, we demonstrate the results of the AI pipeline by showing the deployment of several AI applications such as keyword spotting, image classification and object detection on a set of well-known embedded platforms, where LPDNN consistently outperforms all other popular deployment frameworks.
Demanietta Bott 1966
Creators: name: Lheknim, Vachira
name: Leelawathanagoon, P.
name: Ng, Peter K. L.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Potamidae
Demanietta

description: Demanietta Bott, 1966
 Type species. Potamon (Potamon) manii Rathbun, 1904, by original designation.
description: Published as part of Lheknim, Vachira, Leelawathanagoon, P. & Ng, Peter K. L., 2023, Demanietta sunthorni, a new species of freshwater crab (Crustacea: Decapoda: Brachyura: Potamidae) from Adang-Rawi Island Group, Andaman Sea, south Thailand, pp. 377-386 in Raffles Bulletin of Zoology 71 on page 378, DOI: 10.26107/RBZ-2023-0028, http://zenodo.org/record/8006268
Lossless Source Coding in the Point-to-Point, Multiple Access, and Random Access Scenarios
Creators: name: Chen, Shuqing
name: Effros, Michelle
name: Kostina, Victoria
Publisher: name: arXiv
Year: 2019
Subjects: subject: Information Theory (cs.IT)
subject: FOS: Computer and information sciences

description: This work studies point-to-point, multiple access, and random access lossless source coding in the finite-blocklength regime. In each scenario, a random coding technique is developed and used to analyze third-order coding performance. Asymptotic results include a third-order characterization of the Slepian-Wolf rate region with an improved converse that relies on a connection to composite hypothesis testing. For dependent sources, the result implies that the independent encoders used by Slepian-Wolf codes can achieve the same third-order-optimal performance as a single joint encoder. The concept of random access source coding is introduced to generalize multiple access (Slepian-Wolf) source coding to the case where encoders decide independently whether or not to participate and the set of participating encoders is unknown {\em a priori} to both the encoders and the decoder. The proposed random access source coding strategy employs rateless coding with scheduled feedback. A random coding argument proves the existence of a single deterministic code of this structure that simultaneously achieves the third-order-optimal Slepian-Wolf performance for each possible active encoder set.
description: 35 pages, 10 figures
The Axino-Gravitino Cosmology
Creators: name: Kim, Jihn E.
Publisher: name: arXiv
Year: 1997
Subjects: subject: Astrophysics (astro-ph)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: A cosmological scenario of a light axino and a lighter gravitino is presented. The most important consequence is that it can mimick the mixed dark matter (MDM) model of the large scale structure formation. The presence of axino and gravitino is inevitable in supergravity extension of the invisible axion solution of the strong CP problem. The possibility of a light gravitino is popular in the recent efforts of gauge mediated supersymmetry breaking.
description: latex, 8 pages, talk presented at cosmo97
Additional file 1 of Brain volumes, behavioral inhibition, and anxiety disorders in children: results from the adolescent brain cognitive development study
Creators: name: Hammoud, Rawan A.
name: Ammar, Lara Abou
name: McCall, Stephen J.
name: Shamseddeen, Wael
name: Elbejjani, Martine
Publisher: name: figshare
Year: 2024
Subjects: subject: Space Science
subject: Cell Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Mental Health

description: Supplementary Material 1.
Superheating fields of superconductors: Asymptotic analysis and numerical results
Creators: name: Dolgert, Andrew J.
name: Di Bartolo, S. John
name: Dorsey, Alan T.
Publisher: name: arXiv
Year: 1995
Subjects: subject: Condensed Matter (cond-mat)
subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: The superheated Meissner state in type-I superconductors is studied both analytically and numerically within the framework of Ginzburg-Landau theory. Using the method of matched asymptotic expansions we have developed a systematic expansion for the solutions of the Ginzburg-Landau equations in the limit of small $κ$, and have determined the maximum superheating field $H_{\rm sh}$ for the existence of the metastable, superheated Meissner state as an expansion in powers of $κ^{1/2}$. Our numerical solutions of these equations agree quite well with the asymptotic solutions for $κ<0.5$. The same asymptotic methods are also used to study the stability of the solutions, as well as a modified version of the Ginzburg-Landau equations which incorporates nonlocal electrodynamics. Finally, we compare our numerical results for the superheating field for large-$κ$ against recent asymptotic results for large-$κ$, and again find a close agreement. Our results demonstrate the efficacy of the method of matched asymptotic expansions for dealing with problems in inhomogeneous superconductivity involving boundary layers.
description: 14 pages, 8 uuencoded figures, Revtex 3.0
Residual Intersections are Koszul-Fitting ideals
Creators: name: Bouça, Vinicius
name: Hassanzadeh, Seyed Hamid
Publisher: name: arXiv
Year: 2018
Subjects: subject: Commutative Algebra (math.AC)
subject: Algebraic Geometry (math.AG)
subject: FOS: Mathematics
subject: 13H10, 13D02, 14C17, 14M06

description: One describes generators of disguised residual intersections in any commutative Noetherian rings. It is shown that, over Cohen-Macaulay rings, the disguised residual intersections and algebraic residual intersections are the same, for ideals with sliding depth. This coincidence provides structural results for algebraic residual intersections in quite general setting. It is shown how the DG-algebra structure of Koszul homologies affects the determination of generators of residual intersections. In the midway it is shown that the Buchsbaum-Eisenbud family of complexes can be derived from the Koszul-Čech spectral sequence. This interpretation of Buchsbaum-Eisenbud families has crucial rule to establish the above results.
description: 32pages, Comments Welcome \\ V2: Besides the improvement of the expositions of Sections 3 and 4, we prove our conjecture 5.7 in the case where $s\leq g+1$. Now, one knows the structure of $s\leq g+1$-residual intersections in any (Cohen-Macaulay) rings
Additional file 1 of The impact of thrombocytopenia on prognosis of HBV-related small hepatocellular carcinoma: a propensity score matching analysis
Creators: name: Peng, Wei
name: Li, Chuan
name: Zhang, Xiaoyun
name: Wen, Tianfu
name: Chen, Zheyu
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 1: Table 1. Results of proportional hazard assumption before Cox regression for OS and RFS.
Critical Fields of mesoscopic superconductors
Creators: name: Benoist, Robert
name: Zwerger, Wilhelm
Publisher: name: arXiv
Year: 1996
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: Recent measurements have shown oscillations in the upper critical field of simply connected mesoscopic superconductors. A quantitative theory of these effects is given here on the basis of a Ginzburg-Landau description. For small fields, the $H-T$ phase boundary exhibits a cusp where the screening currents change sign for the first time thus defining a lower critical field $H_{c1}$. In the limit where many flux quanta are threading the sample, nucleation occurs at the boundary and the upper critical field becomes identical with the surface critical field $H_{c3}$.
description: 5 pages (Revtex and 2 PostScript figures), to apppear in Z. Phys. B