cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Brachyhypopomus gauderio Giora, Malabarba 2009
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Gymnotiformes
Hypopomidae
Brachyhypopomus
Brachyhypopomus gauderio

description: Brachyhypopomus gauderio Giora, Malabarba, 2009 Fig. 17 Body elongated and compressed; greatest depth contained 5.8 to 8.1 times in TL; head length 7.6 to 8.6, anal-fin base length 1.2 to 1.4, caudal-peduncle length 2.0 to 3.1, preanal distance 3.9 to 5.0 and prepectoral distance 7.0 to 7.9 in LEA; snout length 2.4 to 4.3, horizontal orbital diameter 8.2 to 11.1 and least interorbital width 3.3 to 4.8 in HL. Mouth terminal. Pectoral fin with 14-17 rays and anal fin with 179- 226 rays; transverse series above lateral line with 7-8 scale rows (Graça, Pavanelli, 2007; Giora, Malabarba, 2009). Ground color yellowish to pale brown; dorsal region and lower-half of body with dark-brown transverse and irregular bars; anal fin hyaline, with dark-brown spots. Maximum total length. 160.0 mm. Distribution. Río de basin, Laguna dos Patos and rio Tramandaí drainages. Remarks. Brachyhypopomus gauderio was identified as B. cf. pinnicaudatus by Graça, Pavanelli (2007). Giora, Malabarba (2009) described the new species from the Laguna dos Patos and rio Tramandaí drainages, río Paraguay and río Uruguay basins. Brachyhypopomus gauderio is a non-native species from the upper rio Paraná, and its occurrence in the region can be associated with its introduction as a live bait by anglers.
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on pages 57-58, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
description: {"references": ["Giora J, Malabarba LR. Brachyhypopomus gauderio, new species, a new example of underestimated species diversity of electric fishes in the southern South America (Gymnotiformes: Hypopomidae). Zootaxa. 2009; 2093: 60 - 68.", "Pavanelli CS, Graca WJ, Zawadzki CH, Britski HA, Vidotti AP, Avelino GS, Verissimo S. Fishes from the Corumba Reservoir, Paranaiba River drainage, upper rio Parana basin, State of Goias, Brazil. Check List. 2007; 3 (1): 58 - 64."]}
Minimax Regret Optimization with Applications in Healthcare Operations
Creators: name: Pourrezaiekhaligh, Pooya
Publisher: name: University of British Columbia
Year: 2023

description: Uncertainty is an inherent characteristic of healthcare due to the complexity and variability of the healthcare system. The healthcare industry constantly evolves, and new medical technologies and treatments are being developed, leading to new challenges and opportunities. Managing uncertainty is critical for healthcare providers as it can impact the quality of care provided to patients and the financial performance of healthcare organizations. Therefore, developing effective strategies for managing uncertainty is essential for achieving better patient outcomes and optimizing resource allocation in healthcare. This thesis explores the application of the regret minimization model to deal with demand uncertainty in a home health care location problem and uncertainty of surgery duration in an operating room planning problem. The objective is to find a balance between being conservative and being computationally efficient in decision-making under uncertainty. The literature review highlights the limitations of robust optimization models, which tend to be overly conservative and ignore the potential benefits of more optimistic scenarios. In contrast, regret minimization models provide a framework that accounts for potential regret in decision-making, leading to less conservative solutions. In the home health care planning problem, the regret minimization model is applied to determine the optimal location of home health care facilities, considering demand uncertainty. The results show that the regret minimization model yields solutions that are less conservative than those obtained using the robust optimization model. In the operating room planning problem, the regret minimization model is applied to optimize the allocation of surgeries to operating rooms, considering the uncertainty of surgery duration. The results show that the regret minimization model outperforms the robust optimization model regarding conservatism. Overall, this thesis demonstrates the effectiveness of the regret minimization model to deal with uncertainty in the home health care location and operating room planning problems.
Assessing Farmers’ Diverse Preferences and Expectations for Tailoring Food and Nutrition Security Interventions in Southeastern Madagascar
Creators: name: Tojo Mandaharisoa, Sarah
name: Steinke, Jonathan
name: Randrianarison, Narilala
name: Kubitza, Christoph
name: Konzack, Alexandra
name: Rafanomezantsoa, Arielle Sandrine
name: Randriamampionona, Denis
name: Sieber, Stefan
name: Andriamaniraka, Harilala
Publisher: name: Humboldt-Universität zu Berlin
Year: 2022
Subjects: subject: Atsimo Atsinanana
subject: criteria ranking
subject: ex ante impact assessment
subject: food security
subject: smallholder farmers
subject: 610 Medizin und Gesundheit

description: Background Severe food and nutrition insecurity persists in Madagascar. The Atsimo Atsinanana region is among the most affected areas due to elevated poverty rates and low levels of resilience to frequent shocks. Implementing food and nutrition security (FNS) interventions could help to improve this situation, but to be effective and sustainable, intervention packages must fit the local context. Objectives To identify locally suitable options, this study assessed the perceptions of local communities in rural Atsimo Atsinanana toward a range of FNS intervention options. Methods We held 12 gender-disaggregated workshops with 80 prospective beneficiaries of an FNS project, from inland and coastal parts of the region. Preferences were elicited for 14 potential FNS interventions. Next, through participatory ex ante impact assessment, participants ranked 8 impact criteria and individually estimated expected impacts of all intervention options on these criteria. Results Overall, participants preferred interventions targeting on-farm crop, vegetable, and livestock production. Income and food self-sufficiency were ranked as the highest intervention priorities. However, intervention preferences differed by gender and geographic location. Whereas preferences for interventions targeting dietary habits were weak across genders, women had relatively stronger preferences for these interventions than men. This shows that collecting gender-disaggregated preferences can enable more gender-sensitive choice of interventions. Preferences also reflected local livelihoods, as more market-oriented coastal sites showed stronger interest in income generation than more subsistence-oriented inland sites. The ex ante impact assessments highlight positive and negative expectations for most interventions, with increased labor burden being the most prominent negative impact overall. Conclusions The findings suggest that participatory, multidimensional impact assessments before project implementation can support development stakeholders in tailoring intervention packages, considering 1) local and gendered preferences and 2) trade-offs among development objectives.
Metafora Dalam Lirik Lagu Kimi Wa Boku Da
Creators: name: Nugroho, Irfan Ueda
Publisher: name: Zenodo
Year: 2019
Subjects: Methaphor,
Song Lyrics
Meaning

description: The title of this research is “Metaphor in Kimi Wa Boku Da by Atsuko Maeda”. This research aims to analyze the category, the meaning and the function of metaphor in Atsuko Maeda song. The theories that are used metaphor by Knowless & Moon (2006). The results of this research shows there are five metaphor identified in Kimi Wa Boku Da song: 1) personification; 2) Association; 3) Allegory; 4) Hyperbole; 5) Metaphore. In addition to it, the metaphor are functioned as follow : 1) to describe one’s feeling; 2) to show up impression whitin the lyrics.
Gymnorhamphichthys britskii Carvalho, Ramos, Albert 2011
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Gymnotiformes
Rhamphichthyidae
Gymnorhamphichthys
Gymnorhamphichthys britskii

description:  Gymnorhamphichthys britskii Carvalho, Ramos, Albert, 2011 Fig. 17 Body elongated and compressed; greatest depth contained 16.6 to 17.9 times in TL; head length 8.5 to 8.7, anal-fin base length 1.4 to 1.6, caudal peduncle length 4.9 to 6.0, preanal distance 7.7 to 8.3 and prepectoral distance 7.8 to 8.2 in LEA; snout length 1.7 to 2.3, horizontal orbital diameter 11.5 to 17.5 and least interorbital width 8.9 to 14.9 in HL. Mouth subterminal; snout relatively short. Pectoral fin with 13-15 rays and anal fin with 141-172 rays (Graça, Pavanelli, 2007; Carvalho et al., 2011). Ground color pale yellow; three dark-brown inconspicuous longitudinal stripes on flank; darkbrown transverse bars on dorsolateral region. Hyaline fins. Maximum total length. 180.0 mm. Biological data. Lives in different habitats, from small streams to large size rivers (Carvalho et al., 2011). Distribution. Río de La Plata basin. Remarks. Gymnorhamphichthys britskii was identified as Gymnorhamphichthys sp. by Graça, Pavanelli (2007). Carvalho et al. (2011) described the new species from the río de La Plata basin. Gymnorhamphichthys britskii has been sampled in the upper rio Paraná floodplain recently, with no anterior records in the basin. Therefore, this species is considered as non-native from the upper rio Paraná, and its occurrence in the region can be associated with its introduction as a live bait by anglers, or with the filling of the Itaipu Reservoir and the consequent inundation of the Sete Quedas Falls.
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on page 58, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
description: {"references": ["Carvalho TP, Ramos CS, Albert JS. A new species of Gymnorhamphichthys (Gymnotiformes: Rhamphichthyidae) from the Parana-Paraguay basin. Copeia. 2011; (3): 400 - 06.", "Pavanelli CS, Graca WJ, Zawadzki CH, Britski HA, Vidotti AP, Avelino GS, Verissimo S. Fishes from the Corumba Reservoir, Paranaiba River drainage, upper rio Parana basin, State of Goias, Brazil. Check List. 2007; 3 (1): 58 - 64."]}
Additional file 1 of Monitoring mosquito nuisance for the development of a citizen science approach for malaria vector surveillance in Rwanda
Creators: name: Murindahabi, Marilyn Milumbu
name: Takken, Willem
name: Misago, Xavier
name: Niyituma, Elias
name: Umupfasoni, Jackie
name: Hakizimana, Emmanuel
name: Vliet, Arnold J. H. Van
name: P. Marijn Poortvliet
name: Mutesa, Leon
name: Murindahabi, Nathalie Kayiramirwa
name: Constantianus J. M. Koenraadt
Publisher: name: figshare
Year: 2021
Subjects: subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1. Mosquito species collected using CDC light traps in selected villages in Busoro and Ruhuha sector, Rwanda (2017)
High efficiency optical coupling to and from silicon photonic integrated circuits
Creators: name: Witt, Donald
Publisher: name: University of British Columbia
Year: 2023

description: In this thesis, I present two new approaches to achieving high optical coupling efficiency to and from silicon photonic devices. The first approach is a new way of optimizing silicon photonic devices by using machine learning trained with measured data obtained from fabricated devices. I call this new approach, fab-in-the-loop reinforcement learning. I show that by applying fab-in-the-loop reinforcement learning to grating coupler design, I am able to make grating couplers with a lower insertion loss and higher bandwidth then by traditional design methods. The second approach is based on a technology called photonic wire bonding. Photonic wire bonding consists of 3D printing a polymer waveguide between two photonic components using two photon polymerization. I show that it is possible to successfully use photonic wire bonds in cryogenic environments by a careful selection of materials and the appropriate techniques for installation of these bonds.
Unified Resonance Framework- Exploring the Experimental Validation of these Ideas
Creators: name: Coupland, Stephen John
Publisher: name: Zenodo
Year: 2025
Subjects: Unified Resonance Framework
Vibrational Resonance
Consciousness
Quantum Mechanics
Reincarnation
OBE's
Space-Time
Interstellar Travel
AI
ETSTM
Resonance Harmonics
Lie Groups
Experimental Validation
Metaphysics
Consciousness Expansion
Harmonic Periodic Table Structure
Double-Slit Experiment
Quantum Superposition

description: Future Directions and Roadmap

Short-term Goals:

Strengthen the mathematical models to produce specific, testable predictions.

Refine the experimental methodologies to verify the effects of vibrational frequencies on quantum states and consciousness.

Publish initial findings and engage with experts to validate the URF framework.

Long-term Goals:

Test the framework through real-world experiments, including space-time manipulation and resonance-based interstellar travel.

Establish AI-based systems for analyzing vibrational resonance, providing a new frontier in understanding space-time and consciousness.
Resting-State Functional Connectivity during Pharmacologically Induced Dissociation in Posttraumatic Stress Disorder
Creators: name: Danböck, Sarah
name: Duek, Or
name: Wilhelm, Frank
name: Harpaz-Rotem, Ilan
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Life Sciences
subject: Neuroscience and Neurobiology
subject: Psychiatry and Psychology
subject: Mental Disorders
subject: Medicine and Health Sciences

description: This study aims to examine resting-state functional connectivity during pharmacologically induced dissociation in patients with posttraumatic stress disorder.
Additional file 2 of Monitoring mosquito nuisance for the development of a citizen science approach for malaria vector surveillance in Rwanda
Creators: name: Murindahabi, Marilyn Milumbu
name: Takken, Willem
name: Misago, Xavier
name: Niyituma, Elias
name: Umupfasoni, Jackie
name: Hakizimana, Emmanuel
name: Vliet, Arnold J. H. Van
name: P. Marijn Poortvliet
name: Mutesa, Leon
name: Murindahabi, Nathalie Kayiramirwa
name: Constantianus J. M. Koenraadt
Publisher: name: figshare
Year: 2021
Subjects: subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 2. Mosquito species collected using CDC light traps in selected villages in Busoro and Ruhuha sector, Rwanda (2018)
Rhamphichthys hahni
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Gymnotiformes
Rhamphichthyidae
Rhamphichthys
Rhamphichthys hahni

description: Rhamphichthys hahni (Meinken, 1937) Fig. 17 Body elongated and compressed; greatest depth contained 6.4 to 9.1 times in TL; head length 6.2 to 7.1, anal-fin base length 1.2, caudal-peduncle length 10.0 to 13.3 in LEA; snout length 1.9 to 2.1, horizontal orbital diameter 20.0 to 23.0 and least interorbital width 6.1 to 7.0 in HL. Mouth terminal; long snout. Pectoral fin with 17-20 rays and anal fin with 337-400 rays; transverse series above lateral line with 20-22 scale rows. Ground color pale brown; darkbrown transverse and irregular bars and blotches. Fins with dark-brown spots, sometimes forming longitudinal irregular stripes (Graça, Pavanelli, 2007). Maximum total length. 800.0 mm (Graça, Pavanelli, 2007). Distribution. Rio Paraná basin. Remarks. Rhamphichthys hahni has been recently captured in the upper rio Paraná floodplain, with no anterior records in the basin. Therefore, this species is considered as nonnative from the upper rio Paraná, and its occurrence in the region can be associated with its introduction as a live bait by anglers, or with the filling of the Itaipu Reservoir and the consequent inundation of the Sete Quedas Falls.
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on page 59, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
description: {"references": ["Pavanelli CS, Graca WJ, Zawadzki CH, Britski HA, Vidotti AP, Avelino GS, Verissimo S. Fishes from the Corumba Reservoir, Paranaiba River drainage, upper rio Parana basin, State of Goias, Brazil. Check List. 2007; 3 (1): 58 - 64."]}
Additional file 3 of Monitoring mosquito nuisance for the development of a citizen science approach for malaria vector surveillance in Rwanda
Creators: name: Murindahabi, Marilyn Milumbu
name: Takken, Willem
name: Misago, Xavier
name: Niyituma, Elias
name: Umupfasoni, Jackie
name: Hakizimana, Emmanuel
name: Vliet, Arnold J. H. Van
name: P. Marijn Poortvliet
name: Mutesa, Leon
name: Murindahabi, Nathalie Kayiramirwa
name: Constantianus J. M. Koenraadt
Publisher: name: figshare
Year: 2021
Subjects: subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 3. Members of the Anopheles gambiae complex found among samples of Anopheles gambiae s.l. tested from Ruhuha and Busoro sector, Ruhuha
ENVRI-FAIR D3.5: Catalogue of services targeted for the private sector
Creators: name: Tegas, Valentina
name: Dubost, Ariane
name: Galeotti, Marco
Publisher: name: Zenodo
Year: 2022
Subjects: ENVRI-FAIR
deliverable
Catalogue of Services
research infrastructures
FAIR standards
data collection
private sector
innovation-cooperation

description: A dedicated catalogue of services is developed in the frame of ENVRI-FAIR to address ENVRI private sector clients/users by defining and implementing strategies for strengthening RI innovation-cooperation awareness and preparedness and promoting industry uptake of ENVRI services in compliance with FAIR standards. The data collection for the catalogue is based on a survey aiming at analysing the current state of the relation between ENVRI and private sector and draw recommendations for strengthening this cooperation.
Additional file 1: of Analysis of economic burden and its associated factors of twenty-three rare diseases in Shanghai
Creators: name: Cai, Xiaoshu
name: Yang, Hui
name: Genchev, Georgi
name: Lu, Hui
name: Yu, Guangjun
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Plant Biology

description: Table S1. The list of major rare diseases in Shanghai. Table S2 Composition of direct medical cost. Table S3. Sample size and mean cost of 34 rare diseases in Shanghai, China. Table S4. Payment types and coverage options for medical treatment in Shanghai, China. (DOCX 36 kb)
Additional file 2 of Profiling and analysis of chemical compounds using pointwise mutual information
Creators: name: Čmelo, I.
name: Voršilák, M.
name: Svozil, D.
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2. Structures of randomly selected nonpher, savi, scubidoo and random_zinc compounds.
Molecular characterization of MET splice mutant receptor signaling as a driver of lung adenocarcinoma
Creators: name: Lu, Cheng-Hsiang (Daniel)
Publisher: name: University of British Columbia
Year: 2023

description: The MET receptor is a critical mediator of tumour progression, frequently overexpressed in advanced lung adenocarcinomas. Despite the existence of clinically approved MET inhibitors, incorporating MET-targeted therapies seldom improve patient outcomes. Recent genome-wide sequencing efforts identified recurrent splice site mutations in the MET proto-oncogene, pointing to a novel role driving tumour initiation. Using matched RNA-seq analyses, these mutations were shown to produce MET mRNA lacking exon 14, which encodes the juxtamembrane regulatory domain responsible for c-CBL mediated receptor degradation. The detection of MET splicing mutations strongly predicts response to anti-MET targeted therapies, and a causal link is well-established. However, the molecular biology underpinning MET-dependent tumour initiation is less understood. In the era of MET-targeted therapies, elucidating these mechanisms is crucial, as response rates remain short of those achieved by other tyrosine kinase inhibitors (e.g. targeting EGFR or ALK), and the emergence of secondary resistance is predicted to limit long-term efficacy. In this thesis, I used expression profiling to identify transcriptional changes associated with MET splice-mutant tumours. I developed isogenic expression models to demonstrate that mutant MET preferentially engages the RAS/MAPK signaling pathway over parallel alternatives, suggesting a critical dependence that can be selectively targeted. In collaboration with clinical investigators, I confirmed the importance of this pathway by showing that KRAS alterations commonly emerge as a mechanism of resistance in patients receiving MET-targeted therapies. In parallel, I established anti-MET drug-resistant lines from MET-mutant cells, with the aim of uncovering additional alterations that might predict clinical resistance. Using targeted genomic sequencing, I discovered independent mutations in SPOP and MGA, both encoding negative regulators of MYC. Transcriptional profiling further support a mechanistic overlap whereby cells independently reactivate MYC to achieve resistance, subsequently validated through MYC overexpression and knockdown experiments. Finally, I established a murine model of mutant MET-driven lung cancer to demonstrate its in vivo transformative potential. I evaluated the utility of this model for elucidating mechanisms of MET-driven tumour initiation, and as a platform for testing treatment strategies. As a whole, this thesis explores the mechanistic bases of tumour initiation and drug resistance, representing a targeted effort at advancing MET treatment strategies.
Additional file 3 of Application of the screening and indirect cohort methods to evaluate the effectiveness of pneumococcal vaccination program in adults 75 years and older in Taiwan
Creators: name: Su, Wei-Ju
name: Pei-Hung Chuang
name: Luan-Yin Chang
name: Hsiu-Yun Lo
name: Chuen-Sheue Chiang
name: Ez-Tzu Wang
name: Yang, Chin-Hui
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 3: Supplementary Table 3. Effectiveness of PPV23 in patients ≥75 years of age, estimated by the indirect cohort (Broome) method, July 2008 to June 2012 (n = 581).
Additional file 2 of Application of the screening and indirect cohort methods to evaluate the effectiveness of pneumococcal vaccination program in adults 75 years and older in Taiwan
Creators: name: Su, Wei-Ju
name: Pei-Hung Chuang
name: Luan-Yin Chang
name: Hsiu-Yun Lo
name: Chuen-Sheue Chiang
name: Ez-Tzu Wang
name: Yang, Chin-Hui
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 2: Supplementary Table 2. Accumulated coverage of PPV23 in older adults, stratified by counties and age groups in Taiwan.
Phase Valencia sweet orange DVS, gene structural annotation, and intact organelle genomes
Creators: name: Wu, Bo
Publisher: name: figshare
Year: 2022
Subjects: subject: 70602 Horticultural Crop Improvement (Selection and Breeding)
subject: FOS: Agriculture, forestry and fisheries

description: Sweet orange (SWO) originated from introgressive hybridization of pummelo and mandarin resulting in a highly heterozygous genome. Here, we assembled a chromosome-level phased Valencia SWO (DVS) genome with ~98.5% completeness, high accuracy (QV=50.6), and the highest annotation BUSCO completeness (99.2%) thus far in Citrus.
Essays on gender and behavioural economics
Creators: name: Matavelli, Ieda
Publisher: name: University of British Columbia
Year: 2023

description: Chapter 2 examines the role of communication in shaping misperceptions about masculinity norms among teenage boys and girls in an experiment in the school environment. I document that most students overestimate the share of classmates who hold traditional views of masculinity with respect to emotional vulnerability and the use of violence. I randomly assigned boys and girls to a one-time discussion session in which they were asked to share their private views about these masculinity beliefs. Immediately and 3-weeks after the discussion, students’ misperceptions about classmates’ beliefs narrowed by at least 50%, similarly for boys and girls. The effects are similar whether students self-select into speaking or were randomly selected. In addition, I provide evidence that boys’ private views about masculinity become more progressive, and that masculine-relevant behaviours such as involvement in violence and emotional vulnerability are not affected after three weeks. In Chapter 3, I investigate whether the election of a far-right sexist politician – Bolsonaro, in Brazil – impacts violence against women, considering the election outcome as an information shock with the potential to impact perceived sexist gender norms. I combine a rich set of administrative data on crimes, hospitalization and election outcomes to build a municipality month balanced panel to estimate the effects of interest. I employ a triple difference design which allows me to compare whether more sexist municipalities - proxied by higher vote share - had a larger increase in violence against women, compared to men, after his election. I do not find evidence that Bolsonaro’s election increased different types of violence against women. Finally, Chapter 4 exploits the role of psychedelic intake on labour market outcomes. We partner with two ayahuasca centres in Brazil to obtain the full record of participants who have attended their ayahuasca ceremonies and link participants with the rich formal labour market data in Brazil. We were able to successfully link 42.5% of participants. Employing frontier difference-in-difference estimators, we show that ayahuasca ceremony attendees are 23 percentage points more likely to leave the formal labour market. We find no effects on the wages of those who continue in the formal labour market.
Masked DVS genome and gene structural annotations for RNA-seq analysis
Creators: name: Wu, Bo
Publisher: name: figshare
Year: 2022
Subjects: subject: 70602 Horticultural Crop Improvement (Selection and Breeding)
subject: FOS: Agriculture, forestry and fisheries

description: Allelic regions with < 0.3% divergence are masked in the haploid chromosome set DVS_B.
Eigenmannia Jordan & Evermann 1896
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Gymnotiformes
Sternopygidae
Eigenmannia

description: Eigenmannia 1. Two inconspicuous dark-brown longitudinal stripes on the flank.............................................................. E. virescens 1’. Three or four conspicuous dark-brown longitudinal stripes on the flank.............................................................. 2 2. Premaxilla with nine or 10 teeth distributed in two rows; pectoral fin with ii,11 or 12 rays and anal fin with 151 to 170 rays.............................................................. E. guairaca 2’. Premaxilla with 31 to 33 teeth distributed in four rows; pectoral fin with ii,14 or 15 rays and anal fin with 176 to 217 rays.............................................................. E. trilineata
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on page 59, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
Additional file 1 of Application of the screening and indirect cohort methods to evaluate the effectiveness of pneumococcal vaccination program in adults 75 years and older in Taiwan
Creators: name: Su, Wei-Ju
name: Pei-Hung Chuang
name: Luan-Yin Chang
name: Hsiu-Yun Lo
name: Chuen-Sheue Chiang
name: Ez-Tzu Wang
name: Yang, Chin-Hui
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Supplementary Table 1. Serotype percentage of IPD in Taiwan from July 2008 to June 2016, stratified by age group.
Molnupiravir: First Approval
Creators: name: Syed, Yahiya Y.
Publisher: name: Adis Journals
Year: 2022
Subjects: Medicine

description: Declarations Funding The preparation of this review was not supported by any external funding. Authorship and Conflict of interest Yahiya Y. Syed is a salaried employee of Adis International Ltd/Springer Nature, and declares no relevant conflicts of interest. All authors contributed to the review and are responsible for the article content. Ethics approval, Consent to participate, Consent to publish, Availability of data and material, Code availability not applicable Additional information about this Adis Drug Review can be found here Abstract Molnupiravir ( Lagevrio®) is an orally-administered antiviral prodrug that inhibits replication of RNA viruses through viral error induction. It is being developed by Merck and Ridgeback Biotherapeutics for the prevention and treatment of Coronavirus disease 2019 (COVID-19). Molnupiravir received its first approval on 4 November 2021 in the UK for the treatment of mild to moderate COVID-19 in adults with a positive severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) diagnostic test and who have at least one risk factor for developing severe illness. Molnupiravir is filed for approval and has emergency use authorization for the treatment of COVID-19 in several countries, including the USA and those in the EU. This article summarizes the milestones in the development of molnupiravir leading to this first approval for COVID-19. © Springer Nature Switzerland AG 2021
Additional file 1 of Community health workers for non-communicable diseases prevention and control in Bangladesh: a qualitative study
Creators: name: Rawal, Lal
name: Jubayer, Shamim
name: Sohel R. Choudhury
name: Sheikh Mohammed Shariful Islam
name: Abdullah, Abu S.
Publisher: name: figshare
Year: 2021
Subjects: Medicine
Biotechnology
Cancer
Science Policy
Computational Biology

description: Additional file 1.
ENVRI-FAIR D3.6: A strategy report defining the connection of ENVRI in EOSC
Creators: name: Hienola, Anca
name: Leijala, Ulpu
Publisher: name: Zenodo
Year: 2023
Subjects: ENVRI-FAIR
strategy report
EOSC
research infrastructures
environmental research
data science

description: This strategy report provides a comprehensive understanding of the connection between European Environmental and Earth System Research Infrastructures and European Open Science Cloud. It aims to define and clarify the relationship between these two entities, highlighting the significance of their collaboration and integration. It focuses on participation in EOSC projects, integration with EOSC architecture, compliance with FAIR Principles, collaboration with EOSC Association, visibility and recognition of ENVRI within the EOSC ecosystem and capacity building and training
Das Warmisrieder Feld
Creators: name: Schaefer, Ingo
Publisher: name: Quartär – Internationales Jahrbuch zur Erforschung des Eiszeitalters und der Steinzeit
Year: 2021

description: Quartär – Internationales Jahrbuch zur Erforschung des Eiszeitalters und der Steinzeit, Bd. 29/30 (1979): Quartär. Internationales Jahrbuch zur Eiszeitalter- und Steinzeitforschung
Eigenmannia guairaca Peixoto, Dutra, Wosiacki 2015
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Gymnotiformes
Sternopygidae
Eigenmannia
Eigenmannia guairaca

description: Eigenmannia guairaca Peixoto, Dutra, Wosiacki, 2015 Fig. 17 Body elongated and compressed; greatest body depth contained 5.9 to 7.0 times in TL; head length 6.5 to 8.3, anal-fin base length 0.7 to 1.2, caudal filament length 2.8 to 4.5, preanal distance 5.0 to 6.0 and prepectoral distance 6.1 to 7.7 in LEA; snout length 3.8 to 4.9, horizontal orbital diameter 6.7 to 8.8 and least interorbital width 2.7 to 3.5 in HL. Mouth terminal; premaxilla with 9 or 10 teeth distributed in two rows. Pectoral fin with 12 or 13 rays and anal fin with 151-170 rays. Lateral line complete, with 110- 143 pored scales; transverse series above lateral line with 9-11 scale rows. Ground color pale brown; four dark-brown longitudinal stripes on flank (one superior medial, one lateral line, one inferior medial and one at anal-fin base). Maximum total length. 173.0 mm TL. Distribution. Tributaries of the rio Iguatemi, and riacho Água do Ó, tributary of rio Paranapanema, upper rio Paraná basin. Remarks. Peixoto et al. (2015) reviewed the Eigenmannia trilineata species-group, described the new species, E. guaiaraca, from the riacho Água do Ó, tributary of the rio Paranapanema, upper rio Paraná basin, and restricted the distribution of E. trilineata to the lower rio Paraná basin. Analyzing additional material hosted at Coleção Ictiológica do Nupélia, specimens similar to E. guairaca were found in tributaries of the rio Iguatemi, right bank of the upper rio Paraná, and specimens similar to those redescribed as E. trilineata by Peixoto et al. (2015) in the upper rio Paraná floodplain and some of its tributaries (e.g. rio Paracaí). Therefore, the occurrence of both species in the studied region has been recorded.
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on page 59, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
description: {"references": ["Peixoto LAW, Dutra GM, Wosiacki WB. The electric glass knifefishes of the Eigenmannia trilineata species-group (Gymnotiformes: Sternopygidae): monophyly and description of seven new species. Zool J Linn Soc. 2015; 175 (2): 384 - 414."]}
Probabilistic maximization of time-dependent capacities in a gas network
Creators: name: Heitsch, Holger
name: Henrion, René
name: Tischendorf, Caren
Publisher: name: Weierstrass Institute
Year: 2023
Subjects: subject: Capacity maximization
subject: gas networks
subject: probabilistic constraints
subject: chance constraints
subject: transient flow
subject: 49M41
subject: 90B06
subject: 90C15

description: The determination of free technical capacities belongs to the core tasks of a gas network owner. Since gas loads are uncertain by nature, it makes sense to understand this as a probabilistic problem as far as stochastic modeling of available historical data is possible. Future clients, however, don?t have a history or they do not behave in a random way, as is the case, for instance, in gas reservoir management. Therefore, capacity maximization turns into an optimization problem with uncertainty-related constrained which are partially of probabilistic and partially of robust (worst case) type. While previous attempts to solve this problem had be devoted to models with static (time-independent) gas flow, we aim at considering here transient gas flow subordinate to a PDE (Euler equations). The basic challenge here is two-fold: first, a proper way of joining probabilistic constraints to the differential equations has to be found. This will be realized on the basis of the so-called spherical-radial decomposition of Gaussian random vectors. Second, a suitable characterization of the worst-case load behaviour of future customers has to be figured out. It will be shown, that this is possible for quasi-static flow and can be transferred to the transient case. The complexity of the problem forces us to constrain ourselves in this first analysis to simple pipes or to a V-like structure of the network. Numerical solutions are presented and show that the differences between quasi-static and transient solutions are small, at least in these elementary examples.
CARG: CODECO AI Resilience and Governance Toolkit - White Paper
Creators: name: Carvalho, Liliana
name: C. Sofia, Rute
Publisher: name: Zenodo
Year: 2025

description: This white paper explores the CODECO CARG Toolkit, which comprises an Artificial Intelligence (AI) resilience and governance methodological framework to assess the use and impact of AI in the Kubernetes Cognitive Decentralised Edge Cloud (CODECO) framework and in selected use-cases.

 CARG is under development and validation within the Horizon Europe CODECO project to support AI-driven orchestration in Cloud-Edge environments.

 The white paper explains CARG and its core principles. Drawing on established frameworks such as the EU AI Act, OECD Principles, and UNESCO’s Ethics of Artificial Intelligence, CARG prioritizes transparency, replicability, and trustworthiness in its approach. Additionally, the white paper introduces advanced tools and processes to automate the assessment, monitoring, and improvement of AI in CODECO serving as blueprint for other similar initiatives.

This white paper focuses on explaining the CODECO AI resilience and governance framework and how it is being applied in the project, as a blueprint that can be adopted by other similar projects, offering practical strategies and innovations to address the challenges and opportunities of AI resilience and governance in Cloud-Edge ecosystems.
Additional file 1 of STRIP2 motivates non-small cell lung cancer progression by modulating the TMBIM6 stability through IGF2BP3 dependent
Creators: name: Zhang, Xilin
name: Chen, Qiuqiang
name: He, Ying
name: Shi, Qian
name: Yin, Chengyi
name: Xie, Yanping
name: Yu, Huanming
name: Bao, Ying
name: Wang, Xiang
name: Tang, Chengwu
name: Dong, Zhaohui
Publisher: name: figshare
Year: 2023
Subjects: subject: Biophysics
subject: Biochemistry
subject: Physical Sciences not elsewhere classified
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 1: Table S1. Relationship between STRIP2 expression in NSCLC and clinicalpathological characteristics. Table S2. Sequence of primers used for qRT-PCR. Table S3. Genes of mass spectrometry. Table S4. Downregulated gene expression of STRIP2 knockdown RNA-sequence data. Table S5. 16 overlapping genes of STRIP2 knockdown RNA-sequence data and two published IGF2BP3 RIP-sequence data and GEO database (GSE90684). Fig. S1. The expression levels of P300 and CBP were increased in NSCLC. Fig. S2. C646 does not affect A549 and PC9 cell viabilities. Fig. S3. IGF2BP3 did not affect STRIP2 expression. Fig. S4. The number of different genes of STRIP2 knockdown RNA-sequence. Fig. S5. IGF2BP3 affected the content of m6A positive TMBIM6 level. Fig. S6. Knockdown of TMBIM6 promoted NSCLC cell apoptosis. Fig. S7. The correlations between STRIP2 or IGF2BP3 and TMBIM6.
Eigenmannia trilineata Lopez, Castello 1966
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Gymnotiformes
Sternopygidae
Eigenmannia
Eigenmannia trilineata

description: Eigenmannia trilineata López, Castello, 1966 Fig. 17 Body elongated and compressed; greatest body depth contained 4.8 to 5.6 times in TL; head length 7.4 to 9.0, anal-fin base length 1.1 to 1.2, caudal filament length 2.8 to 4.0, preanal distance 5.9 to 7.8 and prepectoral distance 7.0 to 9.1 in LEA; snout length 2.5 to 3.5, horizontal orbital diameter 4.0 to 5.2 and least interorbital width 2.0 to 2.6 in HL. Mouth terminal. Pectoral fin with 16-18 and anal fin with 197-230 rays. Lateral line complete, with 110-122 pored scales. Transversal series above lateral line with 15- 16 scale rows (Campos-da-paz, 1997). Ground color pale brown; four dark-brown longitudinal stripes on flank (one superior medial, one on lateral line, one inferior medial and one at anal-fin base) (Graça, Pavanelli, 2007). Maximum total length. 265.0 mm TL (Graça, Pavanelli, 2007). Distribution. Río Paraná basin.
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on page 59, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
description: {"references": ["Campos-da-Paz R. Sistematica e taxonomia dos peixes eletricos das bacias dos rios Paraguai, Parana e Sao Francisco, com notas sobre especies presentes em rios costeiros do leste do Brasil (Teleostei: Ostariophysi: Gymnotiformes). [PhD Thesis]. Sao Paulo, SP: Universidade de Sao Paulo; 1997", "Pavanelli CS, Graca WJ, Zawadzki CH, Britski HA, Vidotti AP, Avelino GS, Verissimo S. Fishes from the Corumba Reservoir, Paranaiba River drainage, upper rio Parana basin, State of Goias, Brazil. Check List. 2007; 3 (1): 58 - 64."]}
MOVEing Towards Open Science in Heliophysics: The Magnetopause Open Validation Experiment
Creators: name: Ringuette, Rebecca
name: Antunes, Alex
name: Niehof, Jonathan T.
name: Bard, Christopher
name: Thompson, Barbara J.
name: Thomas, Brian A.
Publisher: name: Zenodo
Year: 2023

description: Presentation given in the Model Metrics and Validation group at mini-GEM in 2023.
Salish Sea Pacific sand lance (Ammodytes personatus) spawning habitat distribution, population trajectory, and threats
Creators: name: Huard, Jacqueline
Publisher: name: University of British Columbia
Year: 2023

description: Pacific sand lance (Ammodytes personatus) are a small forage fish that play a significant role in the nearshore ecosystems of the Salish Sea, a highly biodiverse and densely populated inland sea in the northeast Pacific Ocean. Despite this important role, sand lance are data deficient. Little information about the species' habitat distribution, population status, and the threats it faces are available across their entire range making management and policy decisions difficult. Concerned conservation organizations and scientists throughout the Salish Sea, have been gathering observations of sand lance and other forage fish species since 2001. Increasing participation in community science surveys for intertidal Pacific sand lance spawning habitat has resulted in the detection of eggs on >90 beaches in the Canadian Salish Sea between 2001 and 2021. Using these data, I developed a Maximum Entropy (MaxEnt) habitat suitability model and found that less than 6% of the intertidal zone of the Canadian Salish Sea is likely to provide suitable spawning habitat for sand lance. To better understand how to conserve this species and their limited and rare habitat, I worked with 38 experts to conduct a population and vulnerability assessment for Salish Sea sand lance via a three-part structured expert elicitation. Under ‘business as usual’ the survey results suggest sand lance populations are in decline and impacts associated with climate change, pollution, and human development consistently ranked as the highest threats of concern.
Comparative immune responses to Mycobacterium tuberculosis in people with latent infection or sterilizing protection.
Creators: name: Cuining Liu
Publisher: name: Zenodo
Year: 2022

description: Archived analysis code for "Comparative immune responses to Mycobacterium tuberculosis in people with latent infection or sterilizing protection." Github release (https://github.com/chooliu/Sterile_vs_Latent_TB_Immunity) created for doi generation and manuscript acceptance/publication.