cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Disruption of Alfvénic turbulence by magnetic reconnection in a collisionless plasma
Creators: name: Mallet, A.
name: Schekochihin, A. A.
name: Chandran, B. D. G.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Plasma Physics (physics.plasm-ph)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Space Physics (physics.space-ph)
subject: FOS: Physical sciences

description: We calculate the disruption scale $λ_{\rm D}$ at which sheet-like structures in dynamically aligned Alfvénic turbulence are destroyed by the onset of magnetic reconnection in a low-$β$ collisionless plasma. The scaling of $λ_{\rm D}$ depends on the order of the statistics being considered, with more intense structures being disrupted at larger scales. The disruption scale for the structures that dominate the energy spectrum is $λ_{\rm D}\sim L_\perp^{1/9}(d_eρ_s)^{4/9}$, where $d_e$ is the electron inertial scale, $ρ_s$ is the ion sound scale, and $L_\perp$ is the outer scale of the turbulence. When $β_e$ and $ρ_s/L_\perp$ are sufficiently small, the scale $λ_{\rm D}$ is larger than $ρ_s$ and there is a break in the energy spectrum at $λ_{\rm D}$, rather than at $ρ_s$. We propose that the fluctuations produced by the disruption are circularised flux ropes, which may have already been observed in the solar wind. We predict the relationship between the amplitude and radius of these structures and quantify the importance of the disruption process to the cascade in terms of the filling fraction of undisrupted structures and the fractional reduction of the energy contained in them at the ion sound scale $ρ_s$. Both of these fractions depend strongly on $β_e$, with the disrupted structures becoming more important at lower $β_e$. Finally, we predict that the energy spectrum between $λ_{\rm D}$ and $ρ_s$ is steeper than $k_\perp^{-3}$, when this range exists. Such a steep "transition range" is sometimes observed in short intervals of solar-wind turbulence. The onset of collisionless magnetic reconnection may therefore significantly affect the nature of plasma turbulence around the ion gyroscale.
description: 21 pages, 1 figure, accepted for publication in JPP
title: NALBB: Enquête dialectologique à Bodilis (3)
Creators: name: Le Dû, Jean
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2011
Subjects: subject: Breton
subject: bre

description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
Additional file 1: of Successful use of whole genome amplified DNA from multiple source types for high-density Illumina SNP microarrays
Creators: name: Dagnall, Casey
name: Morton, Lindsay
name: Belynda Hicks
name: Shengchao Li
name: Weiyin Zhou
name: Karlins, Eric
name: Kedest Teshome
name: Chowdhury, Salma
name: Lashley, Kerrie
name: Sampson, Joshua
name: Robison, Leslie
name: Armstrong, Gregory
name: Bhatia, Smita
name: Radloff, Gretchen
name: Davies, Stella
name: Tucker, Margaret
name: Yeager, Meredith
name: Chanock, Stephen
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Supplementary Tables and Figures. (DOCX 898 kb)
Additional file 6 of Optimal dose of perineural dexmedetomidine to prolong analgesia after brachial plexus blockade: a systematic review and Meta-analysis of 57 randomized clinical trials
Creators: name: Cai, Hai
name: Fan, Xing
name: Feng, Pengjiu
name: Wang, Xiaogang
name: Xie, Yubo
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Hematology

description: Additional file 6. Effect of perineural DEX by dose administered (≤60 μg or>60 μg) on hypotension. Abbreviations: DEX, dexmedetomidine; LA, local anesthetic; CI, confidence interval.
Fault Estimation Filter Design with Guaranteed Stability Using Markov Parameters
Creators: name: Wan, Yiming
name: Keviczky, Tamas
name: Verhaegen, Michel
Publisher: name: arXiv
Year: 2017
Subjects: subject: Systems and Control (eess.SY)
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: For additive actuator and sensor faults, we propose a systematic method to design a state-space fault estimation filter directly from Markov parameters identified from fault-free data. We address this problem by parameterizing a system-inversion-based fault estimation filter with the identified Markov parameters. Even without building an explicit state-space plant model, our novel approach still allows the filter gain design for stabilization and suboptimal $\mathcal{H}_2$ performance. This design freedom cannot be achieved by other existing data-driven fault estimation filter designs so far. Another benefit of our proposed design is the convenience of determining the state order: a higher state order of the filter leads to better estimation performance, at the cost of heavier computational burden. In contrast, order determination is cumbersome when using an identified state-space plant model for the filter design, because of the complicated propagation of the model mismatch into the fault estimation errors. Simulations using an unstable aircraft system illustrate the effectiveness of the proposed new method.
description: accepted as a technical note in IEEE Transactions on Automatic Control
Glare analysis of an integral daylighting and lighting control strategy for offices
Creators: name: Plörer, Daniel
Publisher: name: Zenodo
Year: 2023

description: Complex Fenestration Systems (CFSs) can significantly impact both the visual and non-visual daylight effects on the occupants as well as the energy performance of buildings. To ensure that those impacts improve the overall situation, proper control algorithms are required if the CFS can be operated. The state of the CFS directly and immediately effects the indoor lighting situation. The thermal condition of the building is usually strongly but not directly influenced by the condition of the façade system due to thermal capacities.

In this study an experimental integral control strategy, called Integrated Lighting Module (ILM) is investigated in terms of it's glare prevention capabilities and compared to a cut-off- and a simple rule based control logic. The ILM is an autonomous software package capable to run on building management hardware to control façade systems and artificial lighting in real buildings in an energetically optimised way. The adaptive sampling algorithm raytraverse is employed to calculate Daylight Glare Probability (DGP) values, which are used as a benchmark for the control strategy comparison. The other aspect of this comparison is the opening of the façade, which is evaluated as statistics how often each possible façade state is selected by each control strategy.
description: This research was supported by the Swiss National Science Foundation as part of the project "Light fields in climate-based daylight modeling for spatio-temporal glare assessment" (SNSF #179067) and by the Austrian Research Promotion Agency as part of the project "see-it – Camera-based, user-centered daylight control system for optimal working environments" (FO999893523).
Additional file 1 of GmbZIP1 negatively regulates ABA-induced inhibition of nodulation by targeting GmENOD40–1 in soybean
Creators: name: Xu, Shimin
name: Song, Shanshan
name: Dong, Xiaoxu
name: Wang, Xinyue
name: Wu, Jun
name: Ren, Ziyin
name: Wu, Xuesong
name: Lu, Jingjing
name: Yuan, Huifang
name: Wu, Xinying
name: Li, Xia
name: Wang, Zhijuan
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 1:. Supplementary information contains Supplementary Fig. S1-S3.
Speaker Identification Investigation and Analysis in Unbiased and Biased Emotional Talking Environments
Creators: name: Shahin, Ismail
Publisher: name: arXiv
Year: 2017
Subjects: subject: Sound (cs.SD)
subject: FOS: Computer and information sciences

description: This work aims at investigating and analyzing speaker identification in each unbiased and biased emotional talking environments based on a classifier called Suprasegmental Hidden Markov Models (SPHMMs). The first talking environment is unbiased towards any emotion, while the second talking environment is biased towards different emotions. Each of these talking environments is made up of six distinct emotions. These emotions are neutral, angry, sad, happy, disgust and fear. The investigation and analysis of this work show that speaker identification performance in the biased talking environment is superior to that in the unbiased talking environment. The obtained results in this work are close to those achieved in subjective assessment by human judges.
DEP Bulletin - 2022 - Volume 46 Issue 4
Creators: name: No Name Supplied
Publisher: name: No Publisher Supplied
Year: 2022

description: The DEP bulletin is a semi-monthly publication of the New Jersey Department of Environmental Protection. It contains a list of construction permit applications recently filed or acted upon by the Department along with a calendar of events of interest, a schedule of public hearings, and Environmental Impact Statements acted upon during the period.
Analytic study of 1D diffusive relativistic shock acceleration
Creators: name: Keshet, Uri
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Diffusive shock acceleration (DSA) by relativistic shocks is thought to generate the $dN/dE\propto E^{-p}$ spectra of charged particles in various astronomical relativistic flows. We show that for test particles in one dimension (1D), $p^{-1}=1-\ln\left[γ_d(1+β_d)\right]/\ln\left[γ_u(1+β_u)\right]$, where $β_u$ ($β_d)$ is the upstream (downstream) normalized velocity, and $γ$ is the respective Lorentz factor. This analytically captures the main properties of relativistic DSA in higher dimensions, with no assumptions on the diffusion mechanism. Unlike 2D and 3D, here the spectrum is sensitive to the equation of state even in the ultra-relativistic limit, and (for a J{ü}ttner-Synge equation of state) noticeably hardens with increasing $1
description: Revised version to appear in JCAP
title: NALBB: Enquête dialectologique à Le Tréhou (1)
Creators: name: Le Dû, Jean
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2011
Subjects: subject: Breton
subject: bre

description: Conforms to: doi:10.34847/cocoon.49aefa90-8c1f-3ba8-a099-0ebefc6a2aa7
In vitro antioxidant and anticancer activities of Clinacanthus nutans extracts
Creators: name: Joyce Hui Yie Phung, Isabel Lim Fong
name: Weng Kit Ban
Publisher: name: Silpakorn University Research Innovation and Creativity Administration Office
Year: 2021
Subjects: Clinacanthus nutans colorectal cancer anticancer antioxidants phenolic flavonoid

description: Science, Engineering and Health Studies, 15, , 21050014
Additional file 1: of Burden of severe RSV disease among immunocompromised children and adults: a 10Â year retrospective study
Creators: name: Chatzis, Olga
name: Darbre, Stephanie
name: JĂŠrĂ´Me Pasquier
name: Meylan, Pascal
name: Manuel, Oriol
name: Aubert, John
name: Beck-Popovic, Maja
name: Masouridi-Levrat, Stavroula
name: Ansari, Marc
name: Kaiser, Laurent
name: Posfay-Barbe, Klara
name: Asner, Sandra
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Figure S1. Flow diagram. Table S1. Description of long-term immunosuppression treatment population. Table S2. Predictors for ARTI-attributable hospital admission among all immunocompromised patients and stratified by age-groups (adults vs. children). Table S3. Predictors of progression to LRTI and pneumonia among all immunocompromised patients and stratified by age-groups (adults vs. children). Table S4. Predictors for ARTI-attributable hospital admission among all immunocompromises patients and stratified by age-groups (adults vs. children). Table S5. Predictors of progression to LRTI and pneumonia among all immunocompromises patients and stratified by age-groups (adults vs. children). Table S6. Predictors for ARTI-attributable hospital admission among all immunocompromised patients and stratified by age-groups (adults vs. children). Table S7. Predictors of progression to LRTI and pneumonia among all immunocompromised patients and stratified by age-groups (adults vs. children). (DOCX 140 kb)
A CRISPR platform for targeted in vivo screens identifies Toxoplasma gondii virulence factors in mice.
Creators: name: Young, Joanna
name: Caia Dominicus
name: Wagener, Jeanette
name: Butterworth, Simon
name: Xingda Ye
name: Kelly, Gavin
name: Ordan, Merav
name: Saunders, Becky
name: Instrell, Rachael
name: Howell, Michael
name: Stewart, Aengus
name: Treeck, Moritz
Publisher: name: The Francis Crick Institute
Year: 2020
Subjects: subject: Biochemistry & Proteomics
subject: Tumour Biology
subject: Genetics & Genomics
subject: Genome Integrity & Repair
subject: Cell Biology
subject: Chemical Biology & High Throughput
subject: Infectious Disease
subject: Immunology
subject: FOS: Clinical medicine
subject: Computational & Systems Biology

description: Genome-wide CRISPR screening is a powerful tool to identify genes required under selective conditions. However, the inherent scale of genome-wide libraries can limit their application in experimental settings where cell numbers are restricted, such as in vivo infections or single cell analysis. The use of small scale CRISPR libraries targeting gene subsets circumvents this problem. Here we develop a method for rapid generation of custom guide RNA (gRNA) libraries using arrayed single-stranded oligonucleotides for reproducible pooled cloning of CRISPR/Cas9 libraries. We use this system to generate mutant pools of different sizes in the protozoan parasite Toxoplasma gondi and describe optimised analysis methods for small scale libraries. An in vivo genetic screen in the murine host identifies novel and known virulence factors and we confirm results using cloned knock-out parasites. Our study also reveals a potential trans-rescue of individual knock-out parasites in pools of mutants compared to homogenous knock-out lines of the key virulence factor MYR1.
Influence of poly lactic-co-glycolic acid scaffold with concentrated growth factor on human osteoblast cells
Creators: name: Nur Zety Mohd Noh, Nur Aliana Hidayah Mohamed
Publisher: name: Silpakorn University Research Innovation and Creativity Administration Office
Year: 2021
Subjects: bone graft bone regeneration growth factor polymer scaffold

description: Science, Engineering and Health Studies, 15, , 21050016
GASP IV: A muse view of extreme ram-pressure stripping in the plane of the sky: the case of jellyfish galaxy JO204
Creators: name: Gullieuszik, Marco
name: Poggianti, Bianca M.
name: Moretti, Alessia
name: Fritz, Jacopo
name: Jaffé, Yara L.
name: Hau, George
name: Bischko, Jan C.
name: Bellhouse, Callum
name: Bettoni, Daniela
name: Fasano, Giovanni
name: Vulcani, Benedetta
name: D'Onofrio, Mauro
name: Biviano, Andrea
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: In the context of the GAs Stripping Phenomena in galaxies with Muse (GASP) survey, we present the characterization of JO204, a jellyfish galaxy in A957, a relatively low-mass cluster with $M=4.4 \times10^{14}M_\odot$. This galaxy shows a tail of ionized gas that extends up to 30 kpc from the main body in the opposite direction of the cluster center. No gas emission is detected in the galaxy outer disk, suggesting that gas stripping is proceeding outside-in. The stellar component is distributed as a regular disk galaxy; the stellar kinematics shows a symmetric rotation curve with a maximum radial velocity of 200km/s out to 20 kpc from the galaxy center. The radial velocity of the gas component in the central part of the disk follows the distribution of the stellar component; the gas kinematics in the tail retains the rotation of the galaxy disk, indicating that JO204 is moving at high speed in the intracluster medium. Both the emission and radial velocity maps of the gas and stellar components indicate ram-pressure as the most likely primary mechanism for gas stripping, as expected given that JO204 is close to the cluster center and it is likely at the first infall in the cluster. The spatially resolved star formation history of JO204 provides evidence that the onset of ram-pressure stripping occurred in the last 500 Myr, quenching the star formation activity in the outer disk, where the gas has been already completely stripped. Our conclusions are supported by a set of hydrodynamic simulations.
description: accepted for publication in ApJ
Additional file 8: of A sophisticated, differentiated Golgi in the ancestor of eukaryotes
Creators: name: Lael Barlow
name: NĂ˝VltovĂĄ, Eva
name: Aguilar, Maria
name: Tachezy, Jan
name: Dacks, Joel
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 60506 Virology
subject: Computational Biology

description: Figure S5. Amino acid sequence alignments illustrating conservation of functional motifs of golgins (visualized using Boxshade). (A) C-terminal regions of selected GM130 and golgin-45 orthologues. (B) Segment of GRASP55 and GRASP65, and pre-duplicate GRASP alignment containing the position corresponding to Met164 of human GRASP65. (C) N-terminal region of identified GMAP210 orthologues showing loss of the N-terminal vesicle recognition motif in non-holozoan sequences, and loss of the ALPS domain in non-vertebrate sequences. (D) Conserved GRAB domain of GMAP210 orthologues from diverse eukaryotes including plants and metazoans. (E) Alignment of golgin-84 and CASP transmembrane domain sequences, which contain conserved residues. (F) N-terminal region of identified golgin-84 orthologues, showing comparable tryptophan-containing motifs in diverse eukaryotes. (G) Conserved Rab6-binding domain of TMF orthologues from eukaryotes including Naegleria gruberi. (PDF 212 kb)
Isolate record for VAFB-ISO-957
Creators: name: Kekich, Jessica
Year: 2007
Subjects: subject: Santa Barbara (County)
valueUri: https://core.tdar.org/browse/geographic-keyword/3486/santa-barbara-county
subject: Vandenberg Air Force Base (VAFB)
valueUri: https://core.tdar.org/browse/geographic-keyword/85469/vandenberg-air-force-base-vafb
subject: Vandenberg Space Force Base (VSFB)
valueUri: https://core.tdar.org/browse/geographic-keyword/85584/vandenberg-space-force-base-vsfb
subject: California (State / Territory)
valueUri: https://core.tdar.org/browse/geographic-keyword/1484/california-state-territory
subject: Building Materials
valueUri: https://core.tdar.org/browse/material-type/8/building-materials
subject: Concrete
valueUri: https://core.tdar.org/browse/material-type/188/concrete
subject: Reconnaissance / Survey
valueUri: https://core.tdar.org/browse/investigation-type/7/reconnaissance-survey

description: This document is the isolated find record for VAFB-ISO-957. The artifact is a concrete and fire brick sewer head. The area is largely overgrown with ice plants and the sewer head is mostly filled in. An abandoned asphalt and gravel road lays 20 ft to the east. The isolate is probably associated with Camp Cookie era facilities which once stood in this area.
Additional file 4: of Loss of stomach, loss of appetite? Sequencing of the ballan wrasse (Labrus bergylta) genome and intestinal transcriptomic profiling illuminate the evolution of loss of stomach function in fish
Creators: name: Lie, Kai
name: Tørresen, Ole
name: Solbakken, Monica
name: Rønnestad, Ivar
name: Tooming-Klunderud, Ave
name: Nederbragt, Alexander
name: Jentoft, Sissel
name: Sæle, Øystein
Publisher: name: figshare
Year: 2018
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Computational Biology

description: The figures shows the genomic region with Ensembl coordinates and flanking genes (Synteny) for mboat4, motilin receptor (mlnr), peptide y a (pyya), peptide y b (pyyb), cholecystokinin a (ccka), cholecystokinin b (cckb). (PDF 333 kb)
Ram pressure feeding super-massive black holes
Creators: name: Poggianti, Bianca M.
name: Jaffé, Yara L.
name: Moretti, Alessia
name: Gullieuszik, Marco
name: Radovich, Mario
name: Tonnesen, Stephanie
name: Fritz, Jacopo
name: Bettoni, Daniela
name: Vulcani, Benedetta
name: Fasano, Giovanni
name: Bellhouse, Callum
name: Hau, George
name: Omizzolo, Alessandro
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: When supermassive black holes at the center of galaxies accrete matter (usually gas), they give rise to highly energetic phenomena named Active Galactic Nuclei (AGN). A number of physical processes have been proposed to account for the funneling of gas towards the galaxy centers to feed the AGN. There are also several physical processes that can strip gas from a galaxy, and one of them is ram pressure stripping in galaxy clusters due to the hot and dense gas filling the space between galaxies. We report the discovery of a strong connection between severe ram pressure stripping and the presence of AGN activity. Searching in galaxy clusters at low redshift, we have selected the most extreme examples of jellyfish galaxies, which are galaxies with long tentacles of material extending for dozens of kpc beyond the galaxy disk. Using the MUSE spectrograph on the ESO Very Large Telescope, we find that 6 out of the 7 galaxies of this sample host a central AGN, and two of them also have galactic-scale AGN ionization cones. The high incidence of AGN among the most striking jellyfishes may be due to ram pressure causing gas to flow towards the center and triggering the AGN activity, or to an enhancement of the stripping caused by AGN energy injection, or both. Our analysis of the galaxy position and velocity relative to the cluster strongly supports the first hypothesis, and puts forward ram pressure as another, yet unforeseen, possible mechanism for feeding the central supermassive black hole with gas.
description: published in Nature, Vol.548, Number 7667, pag.304
Parameter estimation for stable distributions with application to commodity futures log returns
Creators: name: Kateregga, Michael
name: Mataramvura, Sure
name: Taylor, David
Publisher: name: arXiv
Year: 2017
Subjects: subject: General Economics (econ.GN)
subject: FOS: Economics and business
subject: 62G07, 62G05

description: This paper explores the theory behind the rich and robust family of α-stable distributions to estimate parameters from financial asset log-returns data. We discuss four-parameter estimation methods including the quantiles, logarithmic moments method, maximum likelihood (ML), and the empirical characteristics function (ECF) method. The contribution of the paper is two-fold: first, we discuss the above parametric approaches and investigate their performance through error analysis. Moreover, we argue that the ECF performs better than the ML over a wide range of shape parameter values, αα including values closest to 0 and 2 and that the ECF has a better convergence rate than the ML. Secondly, we compare the t location-scale distribution to the general stable distribution and show that the former fails to capture skewness which might exist in the data. This is observed through applying the ECF to commodity futures log-returns data to obtain the skewness parameter.
description: 23 pages, 11 Figures and 3 Tables
Isolate record for VAFB-ISO-943
Creators: name: Kekich, Jessica
Year: 2002
Subjects: subject: Santa Barbara (County)
valueUri: https://core.tdar.org/browse/geographic-keyword/3486/santa-barbara-county
subject: Vandenberg Air Force Base (VAFB)
valueUri: https://core.tdar.org/browse/geographic-keyword/85469/vandenberg-air-force-base-vafb
subject: Vandenberg Space Force Base (VSFB)
valueUri: https://core.tdar.org/browse/geographic-keyword/85584/vandenberg-space-force-base-vsfb
subject: California (State / Territory)
valueUri: https://core.tdar.org/browse/geographic-keyword/1484/california-state-territory
subject: Chipped Stone
valueUri: https://core.tdar.org/browse/material-type/2/chipped-stone
subject: Chert
valueUri: https://core.tdar.org/browse/material-type/213/chert
subject: Reconnaissance / Survey
valueUri: https://core.tdar.org/browse/investigation-type/7/reconnaissance-survey

description: This document is the isolated find record for VAFB-ISO-943. The artifact is a bifacially worked primary flake manufactured from dark-gray Monterey chert.
Different Realizations of Cooper-Frye Sampling with Conservation Laws
Creators: name: Schwarz, C.
name: Oliinychenko, D.
name: Pang, L. -G.
name: Ryu, S.
name: Petersen, H.
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Approaches based on viscous hydrodynamics for the hot and dense stage and hadronic transport for the final dilute rescattering stage are successfully applied to the dynamic description of heavy ion reactions at high beam energies. One crucial step in such hybrid approaches is the so called particlization, the transition between the hydrodynamic description to microscopic degrees of freedom. For this purpose, individual particles are sampled on the Cooper-Frye hypersurface. In this work, 4 different realizations of sampling algorithms are compared, where three of them incorporate global conservation laws of quantum numbers in each event. The algorithms are compared within two types of scenarios: simple "box" hypersurface consisting of only one static cell and a typical particlization hypersurface for Au+Au collisions at $\sqrt{s_\mathrm{NN}} = 200$ GeV. For all algorithms the mean multiplicities (or particle spectra) remain unaffected by global conservation laws in the case of large volumes. In contrast, the fluctuations of the particle numbers are affected considerably. The fluctuations of the newly developed SPREW algorithm based on exponential weights and the recently suggested SER algorithm based on ensemble rejection are smaller than without conservation laws and agree with the expectation from the canonical ensemble. The previously applied mode sampling algorithm produces dramatically larger fluctuations, than it is expected in the corresponding microcanonical ensemble, and therefore should be avoided in fluctuation studies. This study might be of interest for investigations of particle fluctuations and correlations, e.g. the suggested signatures for a phase transition or a critical endpoint, in hybrid approaches that are affected by global conservation laws.
description: 11 pages, 8 figures, version accepted to publication in Journal of Physics G
Molecular basis for ATP-hydrolysis-driven DNA translocation by the CMG helicase of the eukaryotic replisome.
Creators: name: Eickhoff, Patrik
name: Kose, Hazal B
name: Martino, Fabrizio
name: Petojevic, Tatjana
name: Ali, Ferdos Abid
name: Locke, Julia
name: Tamberg, Nele
name: Nans, Andrea
name: Berger, James M
name: Botchan, Michael R
name: Yardimci, Hasan
name: Costa, Alessandro
Publisher: name: The Francis Crick Institute
Year: 2020
Subjects: Biochemistry & Proteomics
Imaging
Genome Integrity & Repair
Structural Biology & Biophysics
Cell Cycle & Chromosomes
Chemical Biology & High Throughput

description: In the eukaryotic replisome, DNA unwinding by the Cdc45-MCM-Go-Ichi-Ni-San (GINS) (CMG) helicase requires a hexameric ring-shaped ATPase named minichromosome maintenance (MCM), which spools single-stranded DNA through its central channel. Not all six ATPase sites are required for unwinding; however, the helicase mechanism is unknown. We imaged ATP-hydrolysis-driven translocation of the CMG using cryo-electron microscopy (cryo-EM) and found that the six MCM subunits engage DNA using four neighboring protomers at a time, with ATP binding promoting DNA engagement. Morphing between different helicase states leads us to suggest a non-symmetric hand-over-hand rotary mechanism, explaining the asymmetric requirements of ATPase function around the MCM ring of the CMG. By imaging of a higher-order replisome assembly, we find that the Mrc1-Csm3-Tof1 fork-stabilization complex strengthens the interaction between parental duplex DNA and the CMG at the fork, which might support the coupling between DNA translocation and fork unwinding.
Formal Feature Interpretation of Hybrid Systems
Creators: name: da Costa, Antonio Anastasio Bruto
name: Frehse, Goran
name: Dasgupta, Pallab
Publisher: name: arXiv
Year: 2017
Subjects: subject: Logic in Computer Science (cs.LO)
subject: Software Engineering (cs.SE)
subject: FOS: Computer and information sciences

description: In current practice a formal analysis of hybrid system models is assertion-based. The work presented here is based on features that look beyond functional correctness toward a quantitative evaluation of behavioral attributes. A feature defines a real-valued evaluation function over a specific set of traces. This paper describes an improved method for the interpretation of features over hybrid automata models. It further demonstrates how satisfiability modulo theory solvers can be used for extracting behavioral traces corresponding to corner cases of a feature. Results are demonstrated on examples from the control and circuit domains.
Deep learning extends de novo protein modelling coverage of genomes using iteratively predicted structural constraints.
Creators: name: Greener, Joe G
name: Kandathil, Shaun M
name: Jones, David T
Publisher: name: The Francis Crick Institute
Year: 2020
Subjects: Genetics & Genomics
Structural Biology & Biophysics
Computational & Systems Biology

description: The inapplicability of amino acid covariation methods to small protein families has limited their use for structural annotation of whole genomes. Recently, deep learning has shown promise in allowing accurate residue-residue contact prediction even for shallow sequence alignments. Here we introduce DMPfold, which uses deep learning to predict inter-atomic distance bounds, the main chain hydrogen bond network, and torsion angles, which it uses to build models in an iterative fashion. DMPfold produces more accurate models than two popular methods for a test set of CASP12 domains, and works just as well for transmembrane proteins. Applied to all Pfam domains without known structures, confident models for 25% of these so-called dark families were produced in under a week on a small 200 core cluster. DMPfold provides models for 16% of human proteome UniProt entries without structures, generates accurate models with fewer than 100 sequences in some cases, and is freely available.
Additional file 7: of A sophisticated, differentiated Golgi in the ancestor of eukaryotes
Creators: name: Lael Barlow
name: NĂ˝VltovĂĄ, Eva
name: Aguilar, Maria
name: Tachezy, Jan
name: Dacks, Joel
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Figure S4. Phylogenetic analysis of metazoan GRASP homologues indicates that the duplication producing the GRASP55 and GRASP65 paralogues occurred prior to the divergence of jawed fish from other vertebrates. Both MrBayes and RAxML were used in this analysis, yielding posterior probabilities and bootstrap values, respectively, as node support values, which are shown in the format MrBayes/RAxML (see Methods). The topology shown was reconstructed using MrBayes. Significant support was found for GRASP55 and GRASP65 clades, including Callorhinchus milii (Australian ghost shark) protein sequences, consistent with the presence of both paralogues in the ancestor of jawed fish and other vertebrates. GRASP protein sequences from earlier-branching metazoans do not split into distinct GRASP55 or GRASP65 clades, though they appear to share greater similarity with GRASP55 than GRASP65. (PDF 327 kb)
Additional file 4 of Optimal dose of perineural dexmedetomidine to prolong analgesia after brachial plexus blockade: a systematic review and Meta-analysis of 57 randomized clinical trials
Creators: name: Cai, Hai
name: Fan, Xing
name: Feng, Pengjiu
name: Wang, Xiaogang
name: Xie, Yubo
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Hematology

description: Additional file 4. Regression analysis of perineural DEX dose and mean increase in DOA when combined with short−/intermediate-acting LAs (pink line: mean line; green line: fitting line). Abbreviations: DEX, dexmedetomidine; DOA, duration of analgesia; LA, local anesthetic.
Mid-infrared flare of TDE candidate PS16dtm: dust echo and implications for the spectral evolution
Creators: name: Jiang, Ning
name: Wang, Tinggui
name: Yan, Lin
name: Xiao, Ting
name: Yang, Chenwei
name: Dou, Liming
name: Wang, Huiyuan
name: Cutri, Roc M.
name: Mainzer, Amy
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: PS16dtm was classified as a candidate tidal disruption event (TDE) in a dwarf Seyfert 1 galaxy with low-mass black hole ($\sim10^6M\odot$) and has presented various intriguing photometric and spectra characteristics. Using the archival WISE and the newly released NEOWISE data, we found PS16dtm is experiencing a mid-infrared (MIR) flare which started $\sim11$ days before the first optical detection. Interpreting the MIR flare as a dust echo requires close pre-existing dust with a high covering factor, and suggests the optical flare may have brightened slowly for some time before it became bright detectable from the ground. More evidence is given at the later epochs. At the peak of the optical light curve, the new inner radius of the dust torus has grown to much larger size, a factor of 7 of the initial radius due to strong radiation field. At $\sim150$ days after the first optical detection, the dust temperature has dropped well below the sublimation temperature. Other peculiar spectral features shown by PS16dtm are the transient, prominent FeII emission lines and outflows indicated by broad absorption lines detected during the optical flare. Our model explains the enhanced FeII emission from iron newly released from the evaporated dust. The observed broad absorption line outflow could be explained by accelerated gas in the dust torus due to the radiation pressure.
description: Accepted by ApJ, 5 figures
Male Perceivers' Emotionality Judgments of Sadness Sequences - Replication
Creators: name: Gorges, Megan
name: Goldenberg, Amit
name: Porat, Roni
name: Schöne, Jonas
Publisher: name: Open Science Framework
Year: 2023
Subjects: subject: Social Psychology
subject: Social and Behavioral Sciences
subject: Psychology
subject: FOS: Psychology
subject: emotion
subject: gender
subject: sequential perception

description: The goal of this component is to replicate a previous study and demonstrate that male participants, when presented with sequences of faces displaying neutral to sad emotion 1) are either more or less likely to judge female faces as emotional compared to male faces (two competing hypotheses), and 2) will demonstrate a sequential amplification effect on judgments of emotionality, specifically that participants will be more likely to judge longer sequences as emotional.
Introduction
Creators: name: Kraemer-Mbula, Erika
name: Tijssen, Robert
name: Wallace, Matthew L.
name: McLean, Robert
Publisher: name: Zenodo
Year: 2020
Subjects: research excellence
Global South
bibliometrics
rankings

description: Introduction to the book Transforming Research Excellence: New Ideas from the Global South.
description: Published by African Minds.
Balance of excitation and inhibition determines 1/f power spectrum in neuronal networks
Creators: name: Lombardi, Fabrizio
name: Herrmann, Hans J.
name: de Arcangelis, Lucilla
Publisher: name: arXiv
Year: 2017
Subjects: subject: Neurons and Cognition (q-bio.NC)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Biological sciences
subject: FOS: Physical sciences

description: The $1/f$-like decay observed in the power spectrum of electro-physiological signals, along with scale-free statistics of the so-called neuronal avalanches, constitute evidences of criticality in neuronal systems. Recent in vitro studies have shown that avalanche dynamics at criticality corresponds to some specific balance of excitation and inhibition, thus suggesting that this is a basic feature of the critical state of neuronal networks. In particular, a lack of inhibition significantly alters the temporal structure of the spontaneous avalanche activity and leads to an anomalous abundance of large avalanches. Here we study the relationship between network inhibition and the scaling exponent $β$ of the power spectral density (PSD) of avalanche activity in a neuronal network model inspired in Self-Organized Criticality (SOC). We find that this scaling exponent depends on the percentage of inhibitory synapses and tends to the value $β= 1$ for a percentage of about 30%. More specifically, $β$ is close to $2$, namely brownian noise, for purely excitatory networks and decreases towards values in the interval $[1,1.4]$ as the percentage of inhibitory synapses ranges between 20 and 30%, in agreement with experimental findings. These results indicate that the level of inhibition affects the frequency spectrum of resting brain activity and suggest the analysis of the PSD scaling behavior as a possible tool to study pathological conditions.
MOESM1 of Safety, tolerability and efficacy of intra-articular Progenza in knee osteoarthritis: a randomized double-blind placebo-controlled single ascending dose study
Creators: name: D. Kuah
name: S. Sivell
name: T. Longworth
name: K. James
name: A. Guermazi
name: F. Cicuttini
name: Y. Wang
name: S. Craig
name: G. Comin
name: D. Robinson
name: J. Wilson
Publisher: name: figshare
Year: 2018
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 1: Table S1. Baseline distribution of semi-quantitative MRI OA Knee Score (MOAKS) markers. Table S2. Number of patients noted with changes from screening to month 12 for MOAKS assessments.
Conservation of Quantum Correlations in Multimode Systems with $U(1)$ Symmetry
Creators: name: Buonaiuto, Giuseppe
name: Whittaker, David M.
name: Cancellieri, Emiliano
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We present a theoretical investigation of the properties of quantum correlation functions in a dissipative multimode system. We define a total mth order equal-time correlation function, summed over all modes, which is shown to be conserved if the Hamiltonian possesses U(1) symmetry, provided any dissipation processes are linear in the system operators. As examples, we demonstrate this conservation using numerical simulations of a coupled cavity system and the Jaynes-Cummings model.
description: 5 pages, 2 figures
Employing both Gender and Emotion Cues to Enhance Speaker Identification Performance in Emotional Talking Environments
Creators: name: Shahin, Ismail
Publisher: name: arXiv
Year: 2017
Subjects: subject: Sound (cs.SD)
subject: FOS: Computer and information sciences

description: Speaker recognition performance in emotional talking environments is not as high as it is in neutral talking environments. This work focuses on proposing, implementing, and evaluating a new approach to enhance the performance in emotional talking environments. The new proposed approach is based on identifying the unknown speaker using both his/her gender and emotion cues. Both Hidden Markov Models (HMMs) and Suprasegmental Hidden Markov Models (SPHMMs) have been used as classifiers in this work. This approach has been tested on our collected emotional speech database which is composed of six emotions. The results of this work show that speaker identification performance based on using both gender and emotion cues is higher than that based on using gender cues only, emotion cues only, and neither gender nor emotion cues by 7.22%, 4.45%, and 19.56%, respectively. This work also shows that the optimum speaker identification performance takes place when the classifiers are completely biased towards suprasegmental models and no impact of acoustic models in the emotional talking environments. The achieved average speaker identification performance based on the new proposed approach falls within 2.35% of that obtained in subjective evaluation by human judges.
Homological stability of topological moduli spaces
Creators: name: Krannich, Manuel
Publisher: name: arXiv
Year: 2017
Subjects: subject: Algebraic Topology (math.AT)
subject: Geometric Topology (math.GT)
subject: FOS: Mathematics
subject: 55P48, 55R40, 55R80, 57R19

description: Given a graded $E_1$-module over an $E_2$-algebra in spaces, we construct an augmented semi-simplicial space up to higher coherent homotopy over it, called its canonical resolution, whose graded connectivity yields homological stability for the graded pieces of the module with respect to constant and abelian coefficients. We furthermore introduce a notion of coefficient systems of finite degree in this context and show that, without further assumptions, the corresponding twisted homology groups stabilize as well. This generalizes a framework of Randal-Williams and Wahl for families of discrete groups. In many examples, the canonical resolution recovers geometric resolutions with known connectivity bounds. As a consequence, we derive new twisted homological stability results for e.g. moduli spaces of high-dimensional manifolds, unordered configuration spaces of manifolds with labels in a fibration, and moduli spaces of manifolds equipped with unordered embedded discs. This in turn implies representation stability for the ordered variants of the latter examples.
description: 42 pages, 8 figures, to appear in Geometry & Topology
Additional file 4: of Whole exome sequencing in three families segregating a pediatric case of sarcoidosis
Creators: name: Calender, Alain
name: Farnier, Pierre Rollat
name: Buisson, Adrien
name: Pinson, Stéphane
name: Abderrazzaq Bentaher
name: Lebecque, Serge
name: Corvol, Harriet
name: Taam, Rola Abou
name: Houdouin, Véronique
name: Bardel, Claire
name: Roy, Pascal
name: Devouassoux, Gilles
name: Cottin, Vincent
name: Seve, Pascal
name: Jean-François Bernaudin
name: Lim, Clarice
name: Weichhart, Thomas
name: Valeyre, Dominique
name: Pacheco, Yves
name: Clement, Annick
name: Nathan, Nadia
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Figure S1. CADD scoring of prioritized variants versus other variants in the selected genes. (PDF 71 kb)
Additional file 2: of Loss of stomach, loss of appetite? Sequencing of the ballan wrasse (Labrus bergylta) genome and intestinal transcriptomic profiling illuminate the evolution of loss of stomach function in fish
Creators: name: Lie, Kai
name: Tørresen, Ole
name: Solbakken, Monica
name: Rønnestad, Ivar
name: Tooming-Klunderud, Ave
name: Nederbragt, Alexander
name: Jentoft, Sissel
name: Sæle, Øystein
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: 20199 Astronomical and Space Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Data showing full length analysis of the Illumina de novo brain and intestine transcriptome assembly using BLAST+ and Uniprot as a reference database (release). The metric analysis examines the number of assembled transcripts that appeared to be full length or nearly full length. The first column (#hit_pct_cov_bin %) shows the present coverage in the database. The second column (count_in_bin) shows the number proteins that match a trinity assembly transcript by more than the present given in the table >%. E.g 1554 proteins match a transcript by > 80% and <= 90% of their protein lengths. The third column (>bin_below) shows the number of protein in the reference database that are represented by nearly full length transcripts with a % alignment coverage. (PDF 285 kb)
Additional file 1 of Pregnancy outcomes of Chinese women undergoing IVF with embryonic cryopreservation as compared to natural conception
Creators: name: Wang, Jingxue
name: Liu, Qiwei
name: Deng, Boer
name: Chen, Fang
name: Liu, Xiaowei
name: Cheng, Jiumei
Publisher: name: figshare
Year: 2021
Subjects: Medicine
Cell Biology
Pharmacology
Biotechnology
Chemical Sciences not elsewhere classified
Mathematical Sciences not elsewhere classified
Developmental Biology
Cancer

description: Additional file 1: Supplemental Table 1. Pregnancy outcomes among different infertility etiologies for IVF compared to spontaneous pregnancies in twins. Supplemental Table 2. Neonatal outcomes among different infertility etiologies for IVF compared to spontaneous pregnancies in Twins. Supplemental Table 3. cORs, aORs and 95% CIs of pregnancy outcomes among different infertility etiologies for IVF compared to spontaneous pregnancies in Twins. Supplemental Table 4. cORs, aORs and 95% CIs of neonatal outcomes among different infertility etiologies for IVF compared to spontaneous pregnancies in Twins