cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Memories of Allen Partington
Creators: name: Project Team, Their Finest Hour
Publisher: name: University of Oxford
Year: 2024
Subjects: classificationCode: 430304
subject: British history
classificationCode: 430308
subject: European history (excl. British, classical Greek and Roman)
classificationCode: 430316
subject: International history

description: Allen Partington was my paternal grandfather. He was one of 5 brothers from Bedford, MA (USA), who all served in WW2. Allen was a corporal in the US Army and served overseas in Europe including Italy. He then went on to work for Office of Strategic Services (this has already been scanned).This is a photograph of him in front of the Leaning Tower of Pisa from when he was stationed in Italy. He then went on to work for the OSS which was the precursor for what is now the CIA. He was also involved in Top Secret work making maps and aid to the WW2 effort and strategy. Grandpa was always very proud (albeit very secretive) of his military service and his work for the OSS. Later on in his life he would talk about the maps, strategically where people were placed. He was involved in that. Not quite a spy but the strategic planning of where things were being planned. He wasn't a lifelong service man. He was only in the military for a couple of years but it was one of those things that defined his life. He had a military send off when he passed away. It was something he was really proud and we think he would have liked that. There is also an article from the time. He was one of five brothers involved in WW2. He was the only one in the army (the others were in the navy). It was important to them as a family. All five brothers came back home which must have been a relief to the family. At the time he was already married and he had a wife and son waiting for him at home.
MOESM1 of Functional polymorphisms in LncRNA HOTAIR contribute to susceptibility of pancreatic cancer
Creators: name: Jiang, Dawei
name: Xu, Liu
name: Ni, Jianqi
name: Zhang, Jie
name: Cai, Min
name: Shen, Lan
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified

description: Additional file 1: Figure S1. The mass spectrum plot for rs200349340 TT genotype. Figure S2. The mass spectrum plot for rs200349340 GT genotype. Figure S3. The mass spectrum plot for rs200349340 GG genotype.
From the $γγ\to p \bar{p}$ reaction to the production of $p \bar{p}$ pairs in ultraperipheral ultrarelativistic heavy-ion collisions at the LHC
Creators: name: Kłusek-Gawenda, Mariola
name: Lebiedowicz, Piotr
name: Nachtmann, Otto
name: Szczurek, Antoni
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: In this paper we consider the production of proton-antiproton pairs in two-photon interactions in electron-positron and heavy-ion collisions. We try to understand the dependence of the total cross section on the photon-photon c.m. energy as well as corresponding angular distributions measured by the Belle Collaboration for the $γγ\to p \bar{p}$ process. To understand the Belle data we include the proton-exchange, the $f_2(1270)$ and $f_2(1950)$ $s$-channel exchanges, as well as the hand-bag mechanism. The helicity amplitudes for the $γγ\to f_{2} \to p \bar{p}$ process are written explicitly based on a Lagrangian approach. The parameters of vertex form factors are adjusted to the Belle data. Having described the angular distributions for the $γγ\to p \bar{p}$ process we present first predictions for the ultraperipheral, ultrarelativistic, heavy-ion reaction $^{208}\!Pb \, ^{208}\!Pb \to$ $^{208}\!Pb \, ^{208}\!Pb \,p \bar{p}$. Both, the total cross section and several differential distributions for experimental cuts corresponding to the ALICE, ATLAS, CMS, and LHCb experiments are presented. We find the total cross section 100 $μ$b for the ALICE cuts, 160 $μ$b for the ATLAS cuts, 500 $μ$b for the CMS cuts, and 104 $μ$b taking into account the LHCb cuts. This opens a possibility to study the $γγ\to p \bar{p}$ process at the LHC.
description: 37 pages, 18 figures, 6 tables; v2 accepted for publication in PRD
Additional file 1: of IL1A polymorphisms is a risk factor for colorectal cancer in Chinese Han population: a case control study
Creators: name: Ji, Hong
name: Lu, Le
name: Huang, Jingjing
name: Liu, Yang
name: Zhang, Binchao
name: Tang, Hui
name: Sun, Dangze
name: Zhang, Yafei
name: Shang, Hao
name: Li, Yiming
name: Lu, Hongwei
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Chemical Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Table S1. Primers used for identification of the IL1A polymorphisms. Table S2. Distributions of age and gender in CRC patients and controls. Table S3. Functional annotation of the selected variants provided by HaploReg 4.1. Table S4. eQTL analysis for the five IL1A SNPs provided by GTEx database. (DOCX 24 kb)
$\ell^1$-Analysis Minimization and Generalized (Co-)Sparsity: When Does Recovery Succeed?
Creators: name: Genzel, Martin
name: Kutyniok, Gitta
name: März, Maximilian
Publisher: name: arXiv
Year: 2017
Subjects: subject: Information Theory (cs.IT)
subject: FOS: Computer and information sciences
subject: 42C15, 42C40, 65J22, 94A08, 94A20

description: This paper investigates the problem of signal estimation from undersampled noisy sub-Gaussian measurements under the assumption of a cosparse model. Based on generalized notions of sparsity, we derive novel recovery guarantees for the $\ell^1$-analysis basis pursuit, enabling accurate predictions of its sample complexity. The corresponding bounds on the number of required measurements do explicitly depend on the Gram matrix of the analysis operator and therefore particularly account for its mutual coherence structure. Our findings defy conventional wisdom which promotes the sparsity of analysis coefficients as the crucial quantity to study. In fact, this common paradigm breaks down completely in many situations of practical interest, for instance, when applying a redundant (multilevel) frame as analysis prior. By extensive numerical experiments, we demonstrate that, in contrast, our theoretical sampling-rate bounds reliably capture the recovery capability of various examples, such as redundant wavelets systems, total variation, or random frames. The proofs of our main results build upon recent achievements in the convex geometry of data mining problems. More precisely, we establish a sophisticated upper bound on the conic Gaussian mean width that is associated with the underlying $\ell^1$-analysis polytope. Due to a novel localization argument, it turns out that the presented framework naturally extends to stable recovery, allowing us to incorporate compressible coefficient sequences as well.
Suspected adverse drug reaction reports with oral anticoagulants in Portugal: a pharmacovigilance study
Creators: name: Caldeira, Daniel
name: Rodrigues, Raquel
name: Abreu, Daisy
name: Anes, Ana Marta
name: Rosa, Mário M.
name: Ferreira, Joaquim J.
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Objective: In this pharmacovigilance study, we aimed to determine the incidence of spontaneously reported suspected adverse drug reactions (ADRs) related to oral anticoagulants: non-vitamin K antagonist oral anticoagulants (NOACs; apixaban, dabigatran, edoxaban, rivaroxaban) and vitamin K antagonists (VKA) Research design and methods: In this retrospective observational study, we extracted all the individual case safety reports related to oral anticoagulants recorded in the Portuguese Pharmacovigilance Database (January 2010 to April 2015). The annual incidence of suspected ADRs was estimated using drug exposure data. Disproportionality of reporting ADR was addressed through reporting odds ratio (ROR) and 99% confidence intervals. Results: We appraised 794 suspected ADR (78% related to NOACs). The annual number of ADRs increased overtime with 9 ADRs/million Defined Daily Dose (DDD) at the end of 2014. The incidence of NOACs ADRs decreased from 2012 onwards. VKA showed a disproportion in ‘Investigation’ (ROR 0.10, 99%CI 0.05–0.22) and ‘Injury, poisoning and procedural complications’ (ROR 0.36, 99%CI 0.19–0.69) ADRs compared with NOACs. NOACs had a higher significant disproportion of ‘Nervous system disorders’ related ADRs (ROR 3.98, 99%CI 1.50–10.53). Conclusions: Reporting of ADRs associated with oral anticoagulants (mainly NOACs), is increasing. Exploratory disproportion analyses showed an increase of reports of nervous system ADRs with NOACs, and INR-related ADRs with VKA.
Non-wetting drops at liquid interfaces: From liquid marbles to Leidenfrost drops
Creators: name: Wong, Clint Y. H.
name: Adda-Bedia, Mokhtar
name: Vella, Dominic
Publisher: name: arXiv
Year: 2017
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: We consider the flotation of deformable, non-wetting drops on a liquid interface. We consider the deflection of both the liquid interface and the droplet itself in response to the buoyancy forces, density difference and the various surface tensions within the system. Our results suggest new insight into a range of phenomena in which such drops occur, including Leidenfrost droplets and floating liquid marbles. In particular, we show that the floating state of liquid marbles is very sensitive to the tension of the particle-covered interface and suggest that this sensitivity may make such experiments a useful assay of the properties of these complex interfaces.
description: 21 pages, 9 figures. Minor typos corrected
SDSS-IV MaNGA: Uncovering the Angular Momentum Content of Central and Satellite Early-type Galaxies
Creators: name: Greene, Jenny E.
name: Leauthaud, Alexie
name: Emsellem, Eric
name: Ge, J.
name: Arag'on-Salamanca, A.
name: Greco, J. P.
name: Lin, Y. -T.
name: Mao, S.
name: Masters, K.
name: Merrifield, M.
name: More, S.
name: Okabe, N.
name: Schneider, D. P.
name: Thomas, D.
name: Wake, D. A.
name: Pan, K.
name: Bizyaev, D.
name: Oravetz, D.
name: Simmons, A.
name: Yan, R.
name: Bosch, F. van den
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We study 379 central and 159 satellite early-type galaxies with two-dimensional kinematics from the integral-field survey Mapping Nearby Galaxies at APO (MaNGA) to determine how their angular momentum content depends on stellar and halo mass. Using the Yang et. al. (2007) group catalog, we identify central and satellite galaxies in groups with halo masses in the range 10^12.5 h^-1 M_sun < M_200b < 10^15 h^-1 M_sun. As in previous work, we see a sharp dependence on stellar mass, in the sense that ~ 70% of galaxies with stellar mass M_* > 10^11 h^-2 M_sun tend to have very little rotation, while nearly all galaxies at lower mass show some net rotation. The ~ 30% of high-mass galaxies that have significant rotation do not stand out in other galaxy properties except for a higher incidence of ionized gas emission. Our data are consistent with recent simulation results suggesting that major merging and gas accretion have more impact on the rotational support of lower-mass galaxies. When carefully matching the stellar mass distributions, we find no residual differences in angular momentum content between satellite and central galaxies at the 20\% level. Similarly, at fixed mass, galaxies have consistent rotation properties across a wide range of halo mass. However, we find that errors in classification of centrals and satellites with group finders systematically lowers differences between satellite and central galaxies at a level that is comparable to current measurement uncertainties. To improve constraints, the impact of group finding methods will have to be forward modeled via mock catalogs.
description: 21 pages, 9 figures, accepted version
title: ADCO, Cartulaire de l'abbaye de Cîteaux dit Cartulare Antiquum t.1 (début XIIIe siècle), Cart. 166 (11 H 64), 136 folios, f. 0108r
Creators: name: de la Côte d'Or, Archives départementales
name: CG21/F.PETOT/2012
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire

description: Cartulaire de l'abbaye de Cîteaux dit Cartulare Antiquum t.1 (début XIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 166 (11 H 64), 136 folios, f. 0108r, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de l'abbaye de Cîteaux dit Cartulare Antiquum t.1 (début XIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 166 (11 H 64), 136 folios, f. 0108r, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Disgust and the rubber hand illusion: A registered replication report of Jalal, Krishnakumar, and Ramachandran (2015) (Registered Report, Stage 1)
Creators: name: Nitta, Hiroshi
name: Tomita, Haruto
name: Zhang, Yi
name: Zhou, Xinxin
name: Yamada, Yuki
Publisher: name: figshare
Year: 2018
Subjects: Cognitive Science not elsewhere classified

description: Registered Report, Stage 1:

Heightened experience of disgust is a feature of
obsessive-compulsive disorder (OCD), particularly in contamination-related OCD
(C-OCD). Previous studies of the rubber hand illusion (RHI) reported that the
sense of body ownership is related to the interaction between vision, touch,
and proprioception. A recent study demonstrated a link between the RHI and
disgust, reporting an interaction between these three perceptual modalities and
disgust (Jalal, Krishnakumar, Ramachandran, 2015). However, there have been no
direct replications of this initial study.

We proposed a direct replication of
Jalal et al.’s (2015) study. Based on a power analysis, we will examine a minimum
of 119 participants to determine whether placing contamination-related stimuli
on a rubber hand causes OCD-like disgust among healthy participants while
experiencing the RHI. In addition, we will test the cross-cultural validity of the
previous findings, testing whether Japanese participants experience more
intense disgust when a rubber hand and a participant’s hidden hand were stroked
synchronously, compared with asynchronous stroking. This replication will provide
insight into potential applications of this study protocol in the treatment of
OCD.
Researcher Passports and Open Badges: The Latest in ICPSR's Efforts to Provide Secure, Trustworthy Access to Restricted Data
Creators: name: Davidson Bleckman, Johanna
name: Hemphill, Libby
Publisher: name: Zenodo
Year: 2019
Subjects: Researcher Passport
restricted access
data repositories

description: ICPSR is actively developing the Researcher Passport system introduced at IASSIST 2018, and this presentation will provide an update on the release and early usage of the system. We will also describe our efforts to expand the Research Passport into an open badge ecosystem. Open badges are visual and cryptographic tokens that signal achievement, affiliation, authorization, or another trust relationship and are shareable across the web. As part of the Researcher Passport project, ICPSR is developing infrastructure for issuing and displaying badges that represent different aspects of the necessary training and experience for accessing restricted social science data. We will demonstrate the Researcher Passport website and application portal and discuss its aims to both (a) ease administrative application burden on researchers and repositories and (b) propose a standard for enabling researchers to assert their credentials and for archives to evaluate them. We will then explain the concepts behind the badging infrastructure and discuss our progress on implementing badges in the Researcher Passport.
Nanoscale elastic strain mapping of polycrystalline materials
Creators: name: Rottmann, Paul F.
name: Hemker, Kevin J.
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Biophysics
subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Measuring elastic strain with nanoscale resolution has historically been very difficult and required a marriage of simulations and experiments. Nano precession electron diffraction provides excellent strain and spatial resolution but has traditionally only been applied to single-crystalline semiconductors. The present study illustrates that the technique can also be applied to polycrystalline materials. The strain resolution was determined to be 0.15% and 0.10% for polycrystalline copper and boron carbide, respectively. Local strain maps were obtained near grain boundaries in boron carbide and dislocations in magnesium and shown to correlate with expected values, thus demonstrating the efficacy of this technique. This study demonstrates that nano precession electron diffraction can be extended from semiconductor devices to polycrystalline metals and ceramics to map nanoscale elastic strain fields with high strain resolution.
On facial unique-maximum (edge-)coloring
Creators: name: Andova, Vesna
name: Lidický, Bernard
name: Lužar, Borut
name: Škrekovski, Riste
Publisher: name: arXiv
Year: 2017
Subjects: subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: 05C15

description: A facial unique-maximum coloring of a plane graph is a vertex coloring where on each face $α$ the maximal color appears exactly once on the vertices of $α$. If the coloring is required to be proper, then the upper bound for the minimal number of colors required for such a coloring is set to $5$. Fabrici and Göring [Fabrici and Goring 2016] even conjectured that $4$ colors always suffice. Confirming the conjecture would hence give a considerable strengthening of the Four Color Theorem. In this paper, we prove that the conjecture holds for subcubic plane graphs, outerplane graphs and plane quadrangulations. Additionally, we consider the facial edge-coloring analogue of the aforementioned coloring and prove that every $2$-connected plane graph admits such a coloring with at most $4$ colors.
description: 5 figures
Multiple glass transitions and higher order replica symmetry breaking of binary mixtures
Creators: name: Ikeda, Harukuni
name: Miyazaki, Kunimasa
name: Yoshino, Hajime
name: Ikeda, Atsushi
Publisher: name: arXiv
Year: 2017
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: We extend the replica liquid theory in order to describe the multiple glass transitions of binary mixtures with large size disparities, by taking into account the two-step replica symmetry breaking (2RSB). We determine the glass phase diagram of the mixture of large and small particles in the large-dimension limit where the mean-field theory becomes exact. When the size ratio of particles is beyond a critical value, the theory predicts three distinct glass phases; (i) the 1RSB double glass where both components vitrify simultaneously, (ii) the 1RSB single glass where only large particles are frozen while small particles remain mobile, and (iii) a new glass phase called the 2RSB double glass where both components vitrify simultaneously but with an energy landscape topography distinct from the 1RSB double glass.
description: 9 pages, 5 figures
Design of Research Data Governance Functions Using Data Management Plans and Records
Creators: name: Hiraki, Toshiyuki
Publisher: name: Zenodo
Year: 2024
Subjects: Tools
Infrastructure
Data
Governance

description: Research data is gaining importance under the promotion of open science. Researchers and institutions must manage research data not only for research purposes but also for research integrity and compliance. Our team aims to strengthen institutional research data governance by using data management plans (DMPs) and data management records (DMRs) along the researchers  research workflow. Miho Funamori s presentation examined the feasibility of using DMPs and DMRs for institutional research data governance by embedding this idea in an institutional data policy. It found that some tools are needed to assist researchers in setting up DMPs and collecting DMRs, although the abovementioned idea is theoretically feasible. This study designs a data governance (DG) function to facilitate researchers  data management along their DMP and maintain consistency between the DMP and DMRs.

The DG function works as follows. At the beginning of a project, the DG function assists researchers in creating a DMP by automatically setting certain DMP items based on the data's nature and the institutional data policy. The DG function prompts actions for researchers to manage research data along the DMP during research activities. Actions related to the DMP are recorded as DMRs. The DG function continuously monitors the consistency between the DMP and DMRs and prompts actions to resolve their discrepancies. Different actions must be monitored for respective DMP items, so we are designing the DG function to run this cycle for each DMP item.

Those interested in institutional research data governance, DMPs, and relevant system development should attend this presentation.
Additional file 2 of Bacteriostatic effects of benzyl isothiocyanate on Vibrio parahaemolyticus: Transcriptomic analysis and morphological verification
Creators: name: Liu, Jianan
name: Zhang, Ke
name: Song, Jie
name: Wu, Hongyan
name: Hao, Hongshun
name: Bi, Jingran
name: Hou, Hongman
name: Zhang, Gongliang
Publisher: name: figshare
Year: 2021
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2. Data of RNA sequencing (doc).
Geometrical thermodynamics and P-V criticality of charged accelerating AdS black holes
Creators: name: Jafarzade, Kh.
name: Sadeghi, J.
name: Panah, B. Eslam
name: Hendi, S. H.
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The unusual asymptotic structure of the accelerating black holes led to ambiguity in their geometric characteristics and thermodynamic behavior. Motivated by the interesting properties of such black holes and the significant role of electric charge and string tension on their structure, we study the thermodynamic behavior of these black holes by two methods and examine the changes of free parameters on the thermal behavior of the black holes. First, we investigate phase transition and thermal stability of the system through the use of heat capacity in the non-extended phase space. We examine the effects of electric charge, string tension and the cosmological constant on the phase transition and stability of the system. We also find that to have a phase transition, we have to apply some constraints on the free parameters. Then, we employ the geometrical thermodynamic (GT) method to study phase transition and compare the obtained results with those of the heat capacity. Next, we work in the extended phase space by considering the cosmological constant as a dynamical pressure and evaluate the existence of van der Waals like phase transition. We obtain critical quantities and study the effective role of electric charge and string tension on these quantities. Finally, we make use of the GT method in the extended phase space and find that the results of the GT method, heat capacity and $P-V$ diagram lead to a consistent conclusion.
description: 26 pages, 14 figures, accepted for publication in Annals of Physics
A Quantitative Analysis of the Effect of Bilateral Subthalamic Nucleus-deep Brain Stimulation in Parkinson’s Disease-related Pain
Creators: name: diao, yu
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Medicine and Health Sciences

description: Pain in Parkinson's disease (PD) is a non-motor symptom affecting quality of life with a prevalence of 20%-80%. However, it is unclear that subthalamic nucleus deep brain stimulation (STN-DBS), as a well-established treatment in PD, is effective for PD-related pain. Thus, the objective of this meta-analysis is to investigate the efficacy of STN-DBS for PD-related pain, and explore how the duration affect the efficacy after STN-DBS. A systematic search was performed using PubMed, Embase, Cochrane Library. Nine studies concluded the Numerical Rating Scale (NRS) or Visual Analog Scale (VAS) or Non-motor Symptom Scale (NMSS) scores at baseline and at the last follow-up visit met our inclusion criteria and exhibited moderate to high quality evidence. Two reviewers conducted assessments for study eligibility, risk of bias, data extraction, and quality of evidence rating. Random effects meta-analysis revealed the significantly change in PD-related pain as assessed by NMSS, NRS and VAS (P<0.01). Analysis of short and long follow-up subgroups indicated a delayed improvement in PD-related pain. These findings (a) proved the efficacy of STN-DBS for PD-related pain and provided higher-level evidence, and (b) implicate a delayed improvement in PD-related pain, which may help programming doctors adjust the parameters better.
A test for the existence of isomorphs in glass-forming materials
Creators: name: Fragiadakis, D.
name: Roland, C. M.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We describe a method to determine whether a material has isomorphs in its thermodynamic phase diagram. Isomorphs are state points for which various properties are invariant in reduced units. Such materials are commonly identified from strong correlation between thermal fluctuations of the potential energy, U, and the virial W, but this identification is not generally applicable to real materials. We show from molecular dynamic simulations of atomic, molecular, and polymeric materials that systems with strong U-W correlation cannot be pressure densified; that is, the density obtained on cooling to the glassy state and releasing the pressure is independent of the pressure applied during cooling.
description: 9 pages, 3 figures
Additional file 3 of Bacteriostatic effects of benzyl isothiocyanate on Vibrio parahaemolyticus: Transcriptomic analysis and morphological verification
Creators: name: Liu, Jianan
name: Zhang, Ke
name: Song, Jie
name: Wu, Hongyan
name: Hao, Hongshun
name: Bi, Jingran
name: Hou, Hongman
name: Zhang, Gongliang
Publisher: name: figshare
Year: 2021
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3. Differentially expressed genes related to bacterial motility from KEGG pathways (doc).
Additional file 1 of Bacteriostatic effects of benzyl isothiocyanate on Vibrio parahaemolyticus: Transcriptomic analysis and morphological verification
Creators: name: Liu, Jianan
name: Zhang, Ke
name: Song, Jie
name: Wu, Hongyan
name: Hao, Hongshun
name: Bi, Jingran
name: Hou, Hongman
name: Zhang, Gongliang
Publisher: name: figshare
Year: 2021
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. Sequences of specific primers for qRT–PCR (doc).
Efficiency of Clean Energy Investments by Country
Creators: name: Zhang, Jack
name: Chandra, Evan
Publisher: name: STEM Fellowship Big Data Challenge
Year: 2018
Subjects: subject: 100504 Data Communications
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: Today, improving energy sustainability and investment in renewable energies are the primary methods of combating anthropogenic climate change. However, it is often unclear where the best places to invest in clean energy are. Usually, it requires months of intensive research into the political and economic situations of countries to determine the effect of energy-sector investment in generating electricity and reducing greenhouse gas emissions. However, through an analysis of climate and economic data from the World Bank and Enerdata, which included variables such as greenhouse gas emissions by country and per capita energy production, a general guide to future investment can be developed.Principal component analysis was applied to explore high-dimensional economic and climate-related data in R, and linear regressions were applied to factors that were found to be related to investment efficiency. It was found that already-sustainable countries benefited less per dollar per capita invested in them p=2.11e-7, and that a larger investment per capita reduced the effectiveness of each dollar per capita spent p=0.0418. A proposed optimal per-capita investment by country was determined by a mathematically derived equation.This analysis suggests that to generate more electricity while minimizing greenhouse gas emissions, investing in currently carbon-inefficient countries is preferable over developed countries. However, real-world considerations such as corruption and instability were not included within this quantitative analysis. This means that the analysis does not provide a definitive guide to international energy investment, but instead a general guideline to focus researchers' attentions. These results lay a framework for in-depth analysis on methods to combat the greatest current existential threat to humanity.
Charge-Stripe Order and Superconductivity in $\mathrm{Ir_{1-x}Pt_xTe_2}$
Creators: name: Ivashko, O.
name: Yang, L.
name: Destraz, D.
name: Martino, E.
name: Chen, Y.
name: Guo, C. Y.
name: Yuan, H. Q.
name: Pisoni, A.
name: Matus, P.
name: Pyon, S.
name: Kudo, K.
name: Nohara, M.
name: Forró, L.
name: Rønnow, H. M.
name: Hücker, M.
name: Zimmermann, M. v.
name: Chang, J.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: A combined resistivity and hard x-ray diffraction study of superconductivity and charge ordering in $\mathrm{Ir_{1-x}Pt_xTe_2}$, as a function of Pt substitution and externally applied hydrostatic pressure, is presented. Experiments are focused on samples near the critical composition $x_c\sim 0.045$ where competition and switching between charge order and superconductivity is established. We show that charge order as a function of pressure in $\mathrm{Ir_{0.95}Pt_{0.05}Te_{2}}$ is preempted - and hence triggered - by a structural transition. Charge ordering appears uniaxially along the short crystallographic (1,0,1) domain axis with a $\mathrm{(\frac{1}{5},0,\frac{1}{5})}$ modulation. Based on these results we draw a charge-order phase diagram and discuss the relation between stripe ordering and superconductivity.
description: 8 pages, 4 figures: Accepted in Scientific Reports
title: ADCO, Cartulaire de Cîteaux pour les possessions de Dijon et du Dijonnais (XVe siècle), Cart. 175 (11 H 479), 115 folios, f. 0193
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2017
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire

description: Cartulaire de Cîteaux pour les possessions de Dijon et du Dijonnais (XVe siècle), Archives départementales de la Côte-d'Or, Cart. 175 (11 H 479), 115 folios, f. 0193, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de Cîteaux pour les possessions de Dijon et du Dijonnais (XVe siècle), Archives départementales de la Côte-d'Or, Cart. 175 (11 H 479), 115 folios, f. 0193, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Clinical value of M1 macrophage-related genes identification in bladder urothelial carcinoma and in vitro validation
Creators: name: Yu, Yang
name: Huang, Yuexi
name: Li, Chen
name: Ou, Santao
name: Xu, Chaojie
name: Kang, Zhengjun
Publisher: name: Freie Universität Berlin
Year: 2022
Subjects: subject: M1 macrophage
subject: immunotherapy
subject: chemotherapy
subject: resistance
subject: WGCNA
subject: 500 Naturwissenschaften und Mathematik::570 Biowissenschaften; Biologie::570 Biowissenschaften; Biologie

description: Background: Tumor microenvironment (TME) takes a non-negligible role in the progression and metastasis of bladder urothelial carcinoma (BLCA) and tumor development could be inhibited by macrophage M1 in TME. The role of macrophage M1-related genes in BLCA adjuvant therapy has not been studied well. Methods: CIBERSOR algorithm was applied for identification tumor-infiltrating immune cells (TICs) subtypes of subjects from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) data sets. We identified potential modules of M1 macrophages by weighted gene co-expression network analysis (WGCNA). Nomogram was determined by one-way Cox regression and lasso regression analysis for M1 macrophage genes. The data from GEO are taken to verify the models externally. Kaplan-Meier and receiver operating characteristic (ROC) curves validated prognostic value of M1 macrophage genes. Finally, we divided patients into the low-risk group (LRG) and the high-risk group (HRG) based on the median risk score (RS), and the predictive value of RS in patients with BLCA immunotherapy and chemotherapy was investigated. Bladder cancer (T24, 5637, and BIU-87) and bladder uroepithelial cell line (SV-HUC-1) were used for in vitro validation. Reverse transcription-quantitative polymerase chain reaction (RT-qPCR) was employed to validate the associated genes mRNA level. Results: 111 macrophage M1-related genes were identified using WGCNA. RS model containing three prognostically significant M1 macrophage-associated genes (FBXO6, OAS1, and TMEM229B) was formed by multiple Cox analysis, and a polygenic risk model and a comprehensive prognostic line plot was developed. The calibration curve clarified RS was a good predictor of prognosis. Patients in the LRG were more suitable for programmed cell death protein 1 (PD1) and cytotoxic T lymphocyte associate protein-4 (CTLA4) combination immunotherapy. Finally, chemotherapeutic drug models showed patients in the LRG were more sensitive to gemcitabine and mitomycin. RT-qPCR result elucidated the upregulation of FBXO6, TMEM229B, and downregulation of OAS1 in BLCA cell lines. Conclusion: A predictive model based on M1 macrophage-related genes can help guide us in the treatment of BLCA.
On subregion holographic complexity and renormalization group flows
Creators: name: Roy, Pratim
name: Sarkar, Tapobrata
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We investigate subregion holographic complexity in the context of renormalization group flow geometries. We use both the Poincaŕe slicing and the Janus ansatz as holographic duals to renormalization group flows in the boundary conformal field theory. In the former metric, subregion complexity is computed for a disc and a strip shaped entangling region. For the disc shaped region, consistent emergence of length scales for flow to the deep infra-red is established. For strip shaped regions, we find that complexity cannot locate holographic phase transitions in a sharp domain wall scenario. For smooth domain walls, we find that the complexity might be an indicator of such phase transitions, and give numerical evidence that its derivative changes sign across a transition. Finally, the complexity is computed numerically using the Janus ansatz.
description: 1 + 22 pages, 14 figures, substantially modified draft
Heptaquarks with two heavy antiquarks in a simple chromomagnetic model
Creators: name: Park, Aaron
name: Park, Woosung
name: Lee, Su Houng
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We investigate the symmetry property and the stability of the heptaquark containing two identical heavy antiquarks using color-spin interaction. We construct the wave function of the heptaquark from the Pauli exclusion principle in the SU(3) breaking case. The stability of the heptaquark against the strong decay into one baryon and two mesons is discussed in a simple chromomagnetic model. We find that $q^2 s^3 \bar{s}^2$ with $I=0,S=\frac{5}{2}$ is the most stable heptaquark configuration that could be probed by reconstructing the $Λ+ϕ+ϕ$ invariant mass.
description: 14 pages, 11 figures, version to be published in prd
Quantum Critical Probing and Simulation of Colored Quantum Noise
Creators: name: Mascarenhas, Eduardo
name: de Vega, Ines
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We propose a protocol to simulate the evolution of a non-Markovian open quantum system by considering a collisional process with a many-body system, which plays the role of an environment. As a result of our protocol the environment spatial correlations are mapped into the time correlations of a noise that drives the dynamics of the open system. Considering the weak coupling limit the open system can also be considered as a probe of the environment properties. In this regard, when preparing the environment in its ground state, a measurement of the dynamics of the open system allows to determine the length of the environment spatial correlations and therefore its critical properties. To illustrate our proposal we simulate the full system dynamics with matrix-product-states and compare this with the reduced dynamics obtained with an approximated variational master equation.
Working with Sensitive Research Data: The Qualitative Data Repository's WSRD Project
Creators: name: Kapiszewski, Diana
name: Elman, Colin
name: Kirilova, Dessislava
name: Karcher, Sebastian
Publisher: name: Zenodo
Year: 2019
Subjects: sensitive data
data sharing
data repositories

description: This presentation will discuss the progress and preliminary findings of the Qualitative Data Repository’s (QDR) ongoing “Working with Sensitive Research Data” (WSRD) project. Collecting, analyzing, and sharing sensitive research data pose significant challenges. The societal benefit of creating new knowledge and the contribution that open data and materials make to rigorous science must be balanced with the potential risks that human populations can incur through participating in research, and that can arise when the sensitive data generated through research are shared. In order for human participants to be adequately protected and sensitive data to be responsibly handled, information about the risks associated with sharing those data and the steps taken to mitigate them must be accessible to Institutional Review Board (IRB) personnel, data repositories, funders, and journal editors and publishers. Due to imminent changes to federal regulations, documentation of IRB determinations may no longer be the primary means to convey that information. QDR’s WSRD project, supported by the National Science Foundation, seeks to catalyze and coordinate conversations about this challenge among multiple stakeholders, and develop tools that researchers can use to describe their data and the steps they took to reduce the risk of using and sharing them.
Quasi-two-dimensional nonlinear evolution of helical magnetorotational instability in a magnetized Taylor-Couette flow
Creators: name: Mamatsashvili, G.
name: Stefani, F.
name: Guseva, A.
name: Avila, M.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: Magnetorotational instability (MRI) is one of the fundamental processes in astrophysics, driving angular momentum transport and mass accretion in a wide variety of cosmic objects. Despite much theoretical/numerical and experimental efforts over the last decades, its saturation mechanism and amplitude, which sets the angular momentum transport rate, remains not well understood, especially in the limit of high resistivity, or small magnetic Prandtl numbers typical to interiors (dead zones) of protoplanetary disks, liquid cores of planets and liquid metals in laboratory. Using direct numerical simulations, in this paper we investigate the nonlinear development and saturation properties of the helical magnetorotational instability (HMRI) -- a relative of the standard MRI -- in a magnetized Taylor-Couette flow at very low magnetic Prandtl number (correspondingly at low magnetic Reynolds number) relevant to liquid metals. For simplicity, the ratio of azimuthal field to axial field is kept fixed. From the linear theory of HMRI, it is known that the Elsasser number, or interaction parameter determines its growth rate and plays a special role in the dynamics. We show that this parameter is also important in the nonlinear problem. By increasing its value, a sudden transition from weakly nonlinear, where the system is slightly above the linear stability threshold, to strongly nonlinear, or turbulent regime occurs. We calculate the azimuthal and axial energy spectra corresponding to these two regimes and show that they differ qualitatively. Remarkably, the nonlinear state remains in all cases nearly axisymmetric suggesting that HMRI turbulence is quasi two-dimensional in nature. Although the contribution of non-axisymmetric modes increases moderately with the Elsasser number, their total energy remains much smaller than that of the axisymmetric ones.
description: 26 pages, 9 figures, accepted for publication in New Journal of Physics
title: Πρόταση σχεδιασμού δικτύου πάρκων τσέπης, στη γειτονιά της Γούβας
title: Design proposal of a network of pocket parks in the neighborhood of Gouva, Athens
titleType: AlternativeTitle
Creators: name: Παπαδάτου, Ειρήνη
Publisher: name: Πανεπιστήμιο Δυτικής Αττικής
Year: 2024
Subjects: Πάρκα τσέπης
Αρχιτεκτονική τοπίου
Αισθητηριακή αρχιτεκτονική
Αθήνα
Γούβα
Pocket parks
Athens
Gouva

description: Η πτυχιακή αυτή εργασία έχει ως στόχο την τυπολογική μελέτη και δεικτοδότηση (indexing) των υπαρχόντων μικρού μεγέθους πάρκων και αντίστοιχου μεγέθους αστικών κενών της Αθήνας, και συγκεκριμένα της γειτονιάς της Γούβας. Σκοπός είναι η σύνταξη ενός εγχειρίδιου σχεδιασμού πάρκων τσέπης της συγκεκριμένης γειτονιάς, για μελλοντική χρήση. Ταυτόχρονα, παρουσιάζεται πρόταση σχεδιασμού για τρία, χαρακτηριστικά αστικά κενά, ως πάρκα τσέπης, μέρος του ευρύτερου δικτύου της ίδιας γειτονιάς, με βάση το παραπάνω εγχειρίδιο. Στόχος είναι η μετατροπή αστικών χώρων σε χώρους ανάπαυσης και αναψυχής στην καθημερινότητα των ανθρώπων της πόλης. Μία ανάσα πρασίνου στους αποπνικτικούς ρυθμούς της πόλης. Στο πρώτο μέρος της εργασίας, γίνεται μια βιβλιογραφική αναφορά στους ορισμούς των πάρκων τσέπης, στις ανάλογες χρήσεις τους στην Ευρώπη και στον κόσμο, καθώς και στους λόγους που αυτά είναι σημαντικά σε έναν αστικό ιστό. Ταυτόχρονα, πραγματοποιείται μία έρευνα σε υπάρχοντα σχεδιασμένα πάρκα τσέπης, διαφορετικών χρήσεων και με σχεδιαστικά, λειτουργικά και αισθητικά στοιχεία που λήφθηκαν υπόψη στη σύνθεση της τελικής σχεδιαστικής πρότασης. Στη συνέχεια, διενεργήθηκε μελέτη και ανάλυση της ευρύτερης περιοχής μελέτης και επιλεγμένων αναξιοποίητων αστικών κενών, προς σχεδιασμό. Στη φάση αυτή χρησιμοποιήθηκαν διαγράμματα για τα περιβαλλοντικά στοιχεία και χαρακτηριστικά τη περιοχής, έγινε χαρτογράφηση της περιοχής μελέτης και παρατηρήθηκαν στοιχεία όπως τα τοπόσημα, η κίνηση/κυκλοφορία, οι οπτικές φυγές και οι δημόσιοι και ιδιωτικοί χώροι. Στο ίδιο κεφάλαιο καταγράφτηκαν χαρακτηριστικά στοιχεία όπως η προσβασιμότητα, η γειτνίαση, οι οπτικές τους φυγές και οι ήχοι που παρατηρήθηκαν κατά την επίσκεψή τους και έγινε μία κατηγοριοποίησή τους ως προς την τυπολογία τους. Το κεφάλαιο ολοκληρώνεται με την επιλογή των τριών προς σχεδιασμό αστικών κενών. Στα επόμενα τρία κεφάλαια, αναπτύσσονται το εγχειρίδιο σχεδιασμού, βασιζόμενο στα χαρακτηριστικά στοιχεία του κάθε πάρκου, η μεθοδολογία σχεδιασμού για την δημιουργία της κάτοψης, και η κεντρική ιδέα για την σύνθεση της πρότασης σχεδιασμού. Με γνώμονα όλα τα παραπάνω και εμβαθύνοντας στην σύνθεση της ιδέας καταλήγουμε στην τελική απεικόνιση και παρουσίαση της πρότασης σχεδιασμού των πάρκων Τσέπης στην περιοχή της Γούβα. Συνθετικά εργαλεία για τους πειραματισμούς αποτέλεσαν σκίτσα, φυσικά προπλάσματα και σχέδια υπό κλίμακα. Οι αρχές του αστικού σχεδιασμού τοπίου και της αειφορίας, λειτούργησαν συμπληρωματικά στον τελικό σχεδιασμό.