cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Pandalus sindoi Rathbun 1906
Creators: name: Ahamed, Ferdous
name: Cardoso, Irene A.
name: Ahmed, Zoarder F.
name: Hossain, Md. Y.
name: Ohtomi, Jun
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Pandalidae
Pandalus
Pandalus sindoi

description: P. sindoi (Rathbun, 1906)
Description. Rostrum 1.5 times as long as carapace, from the orbital margin the rostrum runs horizontally forward as far as the distal extremity of the antennular peduncle and from here it is a little and obliquely turned upward, 5 movable teeth on the carapace, lower margin is armed with 6 teeth; abdomen nearly 4-times as long as the carapace; the eyes are little more than one-fourth the length of the carapace and this diameter is slightly longer than the axial; external maxillipeds reach by their terminal joint and one-fourth of the penultimate beyond the antennal scale, exopodite small, not yet reaching to the middle of the antepenultimate joint; 1st pereopods reach by 4/5 their terminal joint (or propodus) beyond the external maxillepeds the penultimate joint or carpus is almost twice as long as the terminal, these joints being respectively 9.1 mm. and 5 mm. long in the adult female (Chace1985).
Distribution. Japan, South China Sea, Philippines and Indonesia; at depths of 122–800 m (Li & Komai 2003).
description: Published as part of Ahamed, Ferdous, Cardoso, Irene A., Ahmed, Zoarder F., Hossain, Md. Y. & Ohtomi, Jun, 2017, An overview of the genus Plesionika Bate, 1888 (Decapoda, Caridea, Pandalidae) in Asian waters, pp. 575-593 in Zootaxa 4221 (5) on page 588, DOI: 10.11646/zootaxa.4221.5.6, http://zenodo.org/record/253575
Chromis atripes Fowler & Bean 1928
Creators: name: Andréfouët, Serge
name: Chen, Wei-Jen
name: Kinch, Jeff
name: Mana, Ralph
name: Russell, Barry C.
name: Tully, Dean
name: White, William T.
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Pomacentridae
Chromis
Chromis atripes

description: Chromis atripes Fowler & Bean 1928 —Darkfin chromis
Status at New Ireland. New record, based on a specimen photographed on 3 June 2013 during ACIAR Aquarium Survey in Kavieng District; a video of a specimen taken at Nubilus Island, off eastern New Hanover, at 3–32 m depth, St. KR 88, in 2014 (identified by Barry C. Russell).
Distribution and habitat. New Ireland: 1, 2.—General distribution: Christmas Island (eastern Indian Ocean) and Indonesia east to Marshall Islands and Fiji, north to southern Japan, south to northern Australia and New Caledonia. Found on deep patch reefs and seaward reef slopes, 2–40 m depth. Marine.
description: Published as part of Andréfouët, Serge, Chen, Wei-Jen, Kinch, Jeff, Mana, Ralph, Russell, Barry C., Tully, Dean & White, William T., 2019, Checklist of the marine and estuarine fishes of New Ireland Province, Papua New Guinea, western Pacific Ocean, with 810 new records, pp. 1-360 in Zootaxa 4588 (1) on page 210, DOI: 10.11646/zootaxa.4588.1.1, http://zenodo.org/record/2988163
Chloeia ancora Frickhinger 1916
Creators: name: Salazar-Vallejo, Sergio I.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Polychaeta
Amphinomida
Amphinomidae
Chloeia
Chloeia ancora

description: Chloeia ancora Frickhinger, 1916 Indeterminable
Chloeia ancora Frickhinger, 1916: 234; Hartman 1959: 131.
Remarks. The specific name was derived from the dorsal pigmentation: “a wide strip, that drags on in the middle of the strongly furrowed back over the animal by the whole length, sends out at the side two equally-wide wandered ribbons in each segment forward so that the picture of an anchor originates approximately in each segment” (Frickinger 1916: 234).
The type material was deposited in the Zoologische Staatssammlung Muenchen, but it is now lost (Ruthenstein-er, Jun. 2021, email). Chloeia ancora Frickhinger, 1916 described from Japan was regarded as a junior synonym of C. flava (Pallas, 1766), described from the Bay of Bengal, by Imajima & Hartman (1964), probably after the record from Japan and comments by de Quatrefages (1866: 387). Imajima & Hartman (1964: 50) indicated that C. ancora has “a median longitudinal stripe with paired lateral branches on each segment.” This pattern rather resembles C. violacea Horst, 1910 because of the dorsal pattern resembles an inverted T, but Imajima & Hartman followed Monro (1924: 71) by disregarding the pigmentation differences as diagnostic for species. However, if the orientation of the body was reversed and the dorsal pattern was rather T- or Y-shaped, then C. ancora might be the same as C. incerta de Quatrefages, 1866. The confusion should be solved after the study of freshly collected specimens which were not available for this study.
Distribution. Japan.
description: Published as part of Salazar-Vallejo, Sergio I., 2023, Revision of Chloeia Savigny in Lamarck, 1818 (Annelida, Amphinomidae), pp. 1-134 in Zootaxa 5238 (1) on pages 27-29, DOI: 10.11646/zootaxa.5238.1.1, http://zenodo.org/record/7621793
Parapandalus rufomaculata Chan 2004
Creators: name: Ahamed, Ferdous
name: Cardoso, Irene A.
name: Ahmed, Zoarder F.
name: Hossain, Md. Y.
name: Ohtomi, Jun
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Pandalidae
Parapandalus
Parapandalus rufomaculata

description: P. rufomaculata Chan, 2004
Description. Rostrum curving downwards near base but recurved upwards after passing eyes, 1.1–1.6 times as long as carapace, basal rostral crest high in females and slightly lower in males, bearing 2 or 3 fixed and 6 movable teeth, posterior 5 or 6 of them situated posterior to orbital margin, dorsal rostrum proper bearing 1 or 2 teeth, usually restricted to proximal half of rostrum, and 2 (rarely 1) small apical teeth, 11–13 teeth generally distributed on ventral rostrum; abdominal 3rd somite slightly arched dorsally; 3rd maxilliped with distal segment 1.4–1.6 times as long as penultimate segment, overreaching scaphocerite by 1/2–2/3 length of distal segment; 2nd pereiopods bearing 21–30 carpal articles on right side and 106–121 carpal articles on left side, shorter one exceeding scaphocerite by 1/2–1/4 length ol carpus and entire chela (Chan 2004).
Distribution. Japan and Taiwan; at depths of 180–300 m (Chan 2004).
description: Published as part of Ahamed, Ferdous, Cardoso, Irene A., Ahmed, Zoarder F., Hossain, Md. Y. & Ohtomi, Jun, 2017, An overview of the genus Plesionika Bate, 1888 (Decapoda, Caridea, Pandalidae) in Asian waters, pp. 575-593 in Zootaxa 4221 (5) on pages 587-588, DOI: 10.11646/zootaxa.4221.5.6, http://zenodo.org/record/253575
Additional file 1: Table S1. of Treatment outcomes of MDR-tuberculosis patients in Brazil: a retrospective cohort analysis
Creators: name: Mayara Bastos
name: Lorrayne Cosme
name: Geisa Fregona
name: Thiago Do Prado
name: Bertolde, Adelmo
name: Zandonade, Eliana
name: Sanchez, Mauro
name: Dalcolmo, Margareth
name: Afrânio Kritski
name: Trajman, Anete
name: Maciel, Ethel
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: Cancer
subject: Science Policy
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: FOS: Biological sciences
subject: Computational Biology

description: Descriptive analysis of treatment outcomes and the year of treatment started in all eligible patients (N = 4029). Table S2. Type of standardized regimens of included patients. Table S3. Resistance pattern of patients included in the study (n = 1972). Table S4. The association of use of individual drugs and treatment outcomes (DOCX 108 kb)
Additional file 2: of Can integrating the Memory Support Intervention into cognitive therapy improve depression outcome? Study protocol for a randomized controlled trial
Creators: name: Harvey, Allison
name: Dong, Lu
name: Lee, Jason
name: Gumport, Nicole
name: Hollon, Steven
name: Rabe-Hesketh, Sophia
name: Hein, Kerrie
name: Haman, Kirsten
name: McNamara, Mary
name: Weaver, Claire
name: Martinez, Armando
name: Notsu, Haruka
name: Zieve, Garret
name: Armstrong, Courtney
Publisher: name: Figshare
Year: 2017
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Summary of primary and secondary outcome(s). (DOCX 13 kb)
Additional file 1: of The effectiveness of research implementation strategies for promoting evidence-informed policy and management decisions in healthcare: a systematic review
Creators: name: Sarkies, Mitchell
name: Kelly-Ann Bowles
name: Skinner, Elizabeth
name: Haas, Romi
name: Lane, Haylee
name: Haines, Terry
Publisher: name: Figshare
Year: 2017
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: PRISMA 2009 checklist. (DOCX 26Â kb)
Additional file 5: of Virus-triggered exacerbation in allergic asthmatic children: neutrophilic airway inflammation and alteration of virus sensors characterize a subgroup of patients
Creators: name: Deschildre, Antoine
name: Pichavant, Muriel
name: Engelmann, Ilka
name: Langlois, Carole
name: Drumez, Elodie
name: Pouessel, Guillaume
name: Boileau, Sophie
name: Romero-Cubero, David
name: Decleyre-Badiu, Irina
name: Dewilde, Anny
name: Hober, Didier
name: Néve, Véronique
name: Thumerelle, Caroline
name: Lejeune, Stéphanie
name: Mordacq, Clémence
name: Gosset, Philippe
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Phenotype of blood antigen-presenting cells from asthmatic children by viral status during the exacerbation and at steady state. The upper part reported data collected during exacerbation from infected (V+) or not infected (V-) patients during the exacerbation, whereas the lower part showed the data obtained at steady state. The phenotype was analyzed in conventional and plasmacytoid DC (cDC and pDC, respectively) as well as in monocytes during the exacerbation and at steady state, respectively. Results are expressed as median of fluorescence intensity (MFI) with interquartile range [IQR]. ND: not detectable, NE: Not evaluated. (PDF 309 kb)
Parapandalus semilaevis Bate 1888
Creators: name: Ahamed, Ferdous
name: Cardoso, Irene A.
name: Ahmed, Zoarder F.
name: Hossain, Md. Y.
name: Ohtomi, Jun
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Pandalidae
Parapandalus
Parapandalus semilaevis

description: P. semilaevis Bate 1888
Description. Rostrum far overreaching antennal scale, armed dorsally, on basal crest only, with 5–9 teeth, including 2 or 3 on carapace posterior to level of orbital margin, none with distinct basal suture or barbed tip, armed ventrally with 19–52 teeth; abdomen without posteromesial tooth or median dorsal carina on 3rd somite; eye kidney-shaped, maximum diameter usually nearly 1/3 carapace length, ocellus represented by tapering, subtruncate lobe, broadening rather than constricted at juncture with cornea; 3rd maxilliped with epipod, penultimate segment from subequal to 7/5 as long as terminal segment; 2nd pereopods subequal with epipods, bearing 19–36 carpal articles (Chace 1985).
Distribution. Indonesia, Philippines, South and East China Seas and Japan; at depths of 176–700 m (Li 2006a).
description: Published as part of Ahamed, Ferdous, Cardoso, Irene A., Ahmed, Zoarder F., Hossain, Md. Y. & Ohtomi, Jun, 2017, An overview of the genus Plesionika Bate, 1888 (Decapoda, Caridea, Pandalidae) in Asian waters, pp. 575-593 in Zootaxa 4221 (5) on page 588, DOI: 10.11646/zootaxa.4221.5.6, http://zenodo.org/record/253575
Chromis caudalis Randall 1988
Creators: name: Andréfouët, Serge
name: Chen, Wei-Jen
name: Kinch, Jeff
name: Mana, Ralph
name: Russell, Barry C.
name: Tully, Dean
name: White, William T.
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Pomacentridae
Chromis
Chromis caudalis

description: Chromis caudalis Randall 1988 —Dusky chromis
Status at New Ireland. New record, based on specimens photographed on 2 June 2013, first dive, during ACIAR Aquarium Survey at Kavieng; others photographed at St. KVG23 (east side of Bauddisson Island, Kavieng District) by Serge Andréfouët on 21 Aug. 2014.
Distribution and habitat. New Ireland: 2.—General distribution: Christmas Island and Indonesia east to Marshall, Phoenix and Line islands, north to Philippines, south to Papua New Guinea. Found on steep seaward reef slopes, 20–50 m depth. Marine.
description: Published as part of Andréfouët, Serge, Chen, Wei-Jen, Kinch, Jeff, Mana, Ralph, Russell, Barry C., Tully, Dean & White, William T., 2019, Checklist of the marine and estuarine fishes of New Ireland Province, Papua New Guinea, western Pacific Ocean, with 810 new records, pp. 1-360 in Zootaxa 4588 (1) on page 210, DOI: 10.11646/zootaxa.4588.1.1, http://zenodo.org/record/2988163
title: R/V HAKUHO MARU Cruise report KH-24-1
Creators: name: Tanaka, Erika
Publisher: name: JAMSTEC
Year: 2024
Subjects: subject: Cruise report
subject: R/V HAKUHO MARU
subject: oceans

description: [CRUISE REPORT]
 This document is a preliminary report of KH-24-1 on R/V HAKUHO MARU from 2024-04-02 to 2024-04-18.
Parapandalus simulatrix Chace 1985
Creators: name: Ahamed, Ferdous
name: Cardoso, Irene A.
name: Ahmed, Zoarder F.
name: Hossain, Md. Y.
name: Ohtomi, Jun
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Pandalidae
Parapandalus
Parapandalus simulatrix

description: P. simulatrix Chace, 1985
Description. Rostrum far overreaching antennal scale, armed dorsally, on basal crest only, with 6–9 teeth, including 2–4 on carapace posterior to level of orbital margin, 1 or more posteriormost teeth sometimes with faint, incomplete basal suture, none with barbed tips, armed ventrally with 29–49 teeth; abdomen without posteromesial tooth or median dorsal carina on 3rd somite; eye broadly subpyriform, maximum diameter about 1/4 carapace length, ocellus represented by tapering, subtruncate lobe, broadening slightly rather than constricted at juncture with cornea; 3rd maxilliped with epipod, penultimate segment from 11/10 to more than 4/3 times as long as terminal segment; 2nd pereopods subequal without epipod, bearing 14–21 carpal articles (Chace 1985).
Distribution. Known only from the Philippine at depths of 216–472 m (Chace 1985).
description: Published as part of Ahamed, Ferdous, Cardoso, Irene A., Ahmed, Zoarder F., Hossain, Md. Y. & Ohtomi, Jun, 2017, An overview of the genus Plesionika Bate, 1888 (Decapoda, Caridea, Pandalidae) in Asian waters, pp. 575-593 in Zootaxa 4221 (5) on page 588, DOI: 10.11646/zootaxa.4221.5.6, http://zenodo.org/record/253575
Chloeia bengalensis Kinberg 1867
Creators: name: Salazar-Vallejo, Sergio I.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Polychaeta
Amphinomida
Amphinomidae
Chloeia
Chloeia bengalensis

description: Chloeia bengalensis Kinberg, 1867 Indeterminable
Chloeia bengalensis Kinberg, 1867: 86 (nomen nudum); Hartman 1949: 38; Hartman 1959: 131.
Remarks. The original proposal of the new name by Kinberg (1867: 86) does not comply with the code (ICZN 1999, Art. 13.1.1), and is a nomen nudum. Hartman (1949: 38) extended the diagnosis, noted that the type had branchiae from chaetiger 5, a pale dorsum with two longitudinal dark bands, and with some notochaetae with serrations, but regarded the species as indeterminable. She also indicated that the species “was never described or illustrated.”
Fauvel (1953: 94) indicated in his key that C. fusca McIntosh, 1885 could have either a dark dorsum or with a couple of longitudinal thin purple stripes, and he illustrated this latter variation (Fauvel 1953, Fig. 46d). The pigmentation pattern, two longitudinal dark bands, is also present in C. bistriata Grube, 1868 which was fully described from the Red Sea. However, its description indicated it has smooth notochaetae, probably because it was described with a very small specimen (7.7 mm long). Consequently, C. bengalensis Kinberg, 1867 must be regarded as indeterminable and C. bistriata Grube, 1868 can be used for Western Indian Ocean specimens having a double longitudinal dorsal line, and blackish anterior area of prostomium with uncommon harpoon-chaetae. The fact that this Red Sea species had dorsally interrupted lines can also be explained by its small size, with larger specimens having complete dorsal double banding.
description: Published as part of Salazar-Vallejo, Sergio I., 2023, Revision of Chloeia Savigny in Lamarck, 1818 (Annelida, Amphinomidae), pp. 1-134 in Zootaxa 5238 (1) on page 31, DOI: 10.11646/zootaxa.5238.1.1, http://zenodo.org/record/7621793
Chromis elerae Fowler & Bean 1928
Creators: name: Andréfouët, Serge
name: Chen, Wei-Jen
name: Kinch, Jeff
name: Mana, Ralph
name: Russell, Barry C.
name: Tully, Dean
name: White, William T.
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Pomacentridae
Chromis
Chromis elerae

description: Chromis elerae Fowler & Bean 1928 —Twinspot chromis
Status at New Ireland. New record, based on specimens photographed by Serge Andréfouët off the southern tip of Bauddisson Island, Kavieng District, St. KVG15, on 17 Aug. 2014; a video of a specimen taken at Nubilus Island, off eastern New Hanover, at 3–32 m depth, St. KR 88, in 2014 (identified by Barry C. Russell).
Distribution and habitat. New Ireland: 1, 2.—General distribution: Maldives and Cocos-Keeling Islands east to Marshall Islands and Fiji, north to Taiwan, south to northern Australia. Found on seaward reef slopes, 12–70 m depth. Marine.
description: Published as part of Andréfouët, Serge, Chen, Wei-Jen, Kinch, Jeff, Mana, Ralph, Russell, Barry C., Tully, Dean & White, William T., 2019, Checklist of the marine and estuarine fishes of New Ireland Province, Papua New Guinea, western Pacific Ocean, with 810 new records, pp. 1-360 in Zootaxa 4588 (1) on page 211, DOI: 10.11646/zootaxa.4588.1.1, http://zenodo.org/record/2988163
title: Why CEOs need advanced education and training for optimizing decisions in the development of innovative medicinal products? justification and recommendation
Creators: name: Kramer, Peter-Jürgen
name: Bode, Gerd
name: Bass, Rolf
Publisher: name: Frontiers Media S.A.
Year: 2025

description: Chief executives have been educated and trained how to handle business, to take executive decisions, and take care of financial and human resources in favor of the company they are leading. CEOs (chief executive officers) of innovative pharmaceutical businesses, among others, have only seldomly been trained to understand the immense time periods involved between decisions and their moment of impact, and the skills and languages used by their internal and external R&D (research and development) staff. R&D staff and regulators, however, have undergone full training, and are usually capable of understanding each other across their various specialties (among them compound finding, quality, safety, efficacy, efficiency, risk assessment and management). What is lacking is the specialized training of CEOs in sectors of R&D, which would benefit the company and patients alike. We propose that CEOs and upper management should undergo cross-border training in R&D topics–wherever possible across all sectors, but minimally to grasp such topics sufficiently to handle those scenarios demanding immediate decisions (be it the CEO cutting off developments, or R&D experts defending their continuation). Learning the language of regulators and R&D scientists will help CEOs to take better decisions. Training programs for R&D staff have been developed and implemented all over Europe and elsewhere. We propose to work with the PharmaTrain3.0 Syllabus (www.pharmatrain.eu/pharmatrain-syllabus) (for details see Supplementary Material), which would support clear-cut training of relevant topics by competent teaching staff towards certification of CEOs and high management. It is foreseen that understanding the language and comprehending the R&D issues and staff will help CEOs in achieving reasoned decisions. It is expected that such decisions will incorporate not only the reasons seen for discontinuation of R&D programs, but also those reasons, which favor their continuation under the same or different headlines (e.g., changing the initially proposed indication). Taken together, training according to "Good Training Practices" (GTP) will benefit the company and the patient, who will receive better medicines as early as possible.
Chromis lepidolepis Bleeker 1877
Creators: name: Andréfouët, Serge
name: Chen, Wei-Jen
name: Kinch, Jeff
name: Mana, Ralph
name: Russell, Barry C.
name: Tully, Dean
name: White, William T.
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Pomacentridae
Chromis
Chromis lepidolepis

description: Chromis lepidolepis Bleeker 1877 —Scaly chromis
Status at New Ireland. New record, based on a video of a specimen taken off Nusa Island, Kavieng District, 2–18 m depth, St. KR32, in 2014 (identified by Barry C. Russell).
Distribution and habitat. New Ireland: 2.—General distribution: Red Sea, East Africa, Comores and Mauritius (Mascarenes) east to Marshall Islands, Line Islands, Fiji and Tonga, north to southern Japan, south to Western Australia, Queensland (Australia) and New Caledonia. Found in coastal, lagoon and seaward reefs, 2–20 m depth. Marine.
description: Published as part of Andréfouët, Serge, Chen, Wei-Jen, Kinch, Jeff, Mana, Ralph, Russell, Barry C., Tully, Dean & White, William T., 2019, Checklist of the marine and estuarine fishes of New Ireland Province, Papua New Guinea, western Pacific Ocean, with 810 new records, pp. 1-360 in Zootaxa 4588 (1) on page 211, DOI: 10.11646/zootaxa.4588.1.1, http://zenodo.org/record/2988163
Additional file 3: of Can integrating the Memory Support Intervention into cognitive therapy improve depression outcome? Study protocol for a randomized controlled trial
Creators: name: Harvey, Allison
name: Dong, Lu
name: Lee, Jason
name: Gumport, Nicole
name: Hollon, Steven
name: Rabe-Hesketh, Sophia
name: Hein, Kerrie
name: Haman, Kirsten
name: McNamara, Mary
name: Weaver, Claire
name: Martinez, Armando
name: Notsu, Haruka
name: Zieve, Garret
name: Armstrong, Courtney
Publisher: name: Figshare
Year: 2017
Subjects: subject: Cell Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Timeframe for Assessments. Table indicating time points where assessments are conducted. (DOCX 46 kb)
Chloeia bimaculata Wang, Zhang, Xie & Qiu 2019
Creators: name: Salazar-Vallejo, Sergio I.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Polychaeta
Amphinomida
Amphinomidae
Chloeia
Chloeia bimaculata

description: Chloeia bimaculata Wang, Zhang, Xie & Qiu, 2019
Chloeia bimaculata Wang, Zhang, Xie & Qiu, 2019: 4–5, Figs 1, 2, 5, Tables 1, 2.
Additional material. Hong Kong. One specimen (ECOSUR), slightly bent ventrally, collected during night dive, 26 Aug. 2019, J. Xie, coll. (body grayish, dorsal pigmentation includes a blackish middorsal 8-shaped band, anterior region wider than posterior one, waist very thin, surrounded by two curved bands (parenthesis-like), and lateral bands running from the posterior third along anterior parapodial surfaces, and a shorter interramal blackish spot; dorsal cirri blackish; branchiae grayish, with stems black along their lower half; caruncle with median ridge blackish; 70 mm long, 11 mm wide, 33 chaetigers).
Diagnosis. Chloeia with bipinnate branchiae from chaetiger 4, progressively smaller posteriorly; middorsal spots band-shaped, constricted medially, separated into two spots in median segments; prenotopodial dark band narrow; harpoon notochaetae without spurs; neurochaetae spurred and furcates.
Remarks. Chloeia bimaculata Wang, Zhang, Xie & Qiu, 2019 resembles C. amphora Horst, 1910 described from Indonesia, because it has dorsal spots varying from an amphora like spot along chaetigers 3–7, although in following segments spots have a median constriction or waist, becoming thinner along median and posterior chaetigers, and in some only two larger spots remain, hence the specific name. Wang et al. (2019) made no comparison with any other species, but these two species differ in the type of spots, and also in some chaetal features. Thus, in C. bimaculata anterior notochaetae are spurred, pale, and harpoon notochaetae are smooth, or have a tiny spur, whereas in C. amphora anterior notochaetae are furcates with golden tines, and most harpoon notochaetae have a well-developed spur.
Distribution. Only known from Hong Kong shallow water sediments.
description: Published as part of Salazar-Vallejo, Sergio I., 2023, Revision of Chloeia Savigny in Lamarck, 1818 (Annelida, Amphinomidae), pp. 1-134 in Zootaxa 5238 (1) on pages 31-32, DOI: 10.11646/zootaxa.5238.1.1, http://zenodo.org/record/7621793
Search for singly produced vector-like top partners in multilepton final states with 139 $\mathrm{fb}^{-1}$ of $pp$ collision data at $\sqrt{s} = 13$ TeV with the ATLAS detector
Creators: name: ATLAS Collaboration
Publisher: name: arXiv
Year: 2023
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: A search for the single production of a vector-like top partner ($T$) with mass greater than 1 TeV decaying into a $Z$ boson and a top quark is presented, using the full Run 2 dataset corresponding to 139 fb$^{-1}$ of $pp$ collisions at $\sqrt{s}$ = 13 TeV, collected in 2015-2018 with the ATLAS detector at the Large Hadron Collider. The targeted final state is characterized by the presence of a pair of electrons or muons with opposite-sign charges which form a $Z$-boson candidate, as well as by the presence of $b$-tagged jets and forward jets. Events with exactly two or at least three leptons are categorized into two independently optimized analysis channels. No significant excess above the background expectation is observed and the results from the two channels are statistically combined to set exclusion limits at 95% confidence level on the masses and couplings of $T$. The results are interpreted in several benchmark scenarios to set limits on the mass and universal coupling strength ($κ$) of the vector-like quark. For singlet $T$ quarks, $κ$ values between 0.22 and 0.64 are excluded for masses between 1000 and 1975 GeV. For $T$ quarks in the doublet scenario, where the production cross section is much lower, $κ$ values between 0.54 and 0.88 are excluded for masses between 1000 and 1425 GeV.
description: 48 pages in total, author list starting page 31, 10 figures, 4 tables, published in Phys. Rev. D. All figures including auxiliary figures are available at http://atlas.web.cern.ch/Atlas/GROUPS/PHYSICS/PAPERS/EXOT-2020-01
Additional file 2: of The effectiveness of research implementation strategies for promoting evidence-informed policy and management decisions in healthcare: a systematic review
Creators: name: Sarkies, Mitchell
name: Kelly-Ann Bowles
name: Skinner, Elizabeth
name: Haas, Romi
name: Lane, Haylee
name: Haines, Terry
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Search Strategy. (DOCX 171Â kb)
Pandalus spinensis Chace 1985
Creators: name: Ahamed, Ferdous
name: Cardoso, Irene A.
name: Ahmed, Zoarder F.
name: Hossain, Md. Y.
name: Ohtomi, Jun
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Pandalidae
Pandalus
Pandalus spinensis

description: P. spinensis Chace, 1985
Description. Rostrum far overreaching antennal scale, armed dorsally throughout length with 13–24 teeth, including 2 or 3 on carapace posterior to level of orbital margin, posteriormost tooth with faint, incomplete basal suture, none with barbed tips, armed ventrally with 2539 teeth; abdomen typically with posteromesial tooth but without median dorsal carina on 3rd somite; eye very broadly subpyriform, maximum diameter nearly or quite 1/3 carapace length, ocellus subcircular, somewhat constricted at juncture with cornea; 3rd maxilliped with epipod, penultimate segment slightly shorter or longer than terminal segment; 2nd pereopods subequal with welldeveloped epipod, bearing 14–23 carpal articles (Chace 1985).
Distribution. South China Sea and Philippines; at depths of 199–472 m (Li 2006a)
description: Published as part of Ahamed, Ferdous, Cardoso, Irene A., Ahmed, Zoarder F., Hossain, Md. Y. & Ohtomi, Jun, 2017, An overview of the genus Plesionika Bate, 1888 (Decapoda, Caridea, Pandalidae) in Asian waters, pp. 575-593 in Zootaxa 4221 (5) on page 588, DOI: 10.11646/zootaxa.4221.5.6, http://zenodo.org/record/253575
Self-Dual Maxwell Fields from Clifford Analysis
Creators: name: Robson, Calum
Publisher: name: arXiv
Year: 2023
Subjects: subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: The study of complex functions is based around the study of holomorphic functions, satisfying the Cauchy-Riemann equations. The relatively recent field of Clifford Analysis lets us extend many results from Complex Analysis to higher dimensions. In this paper, I decompose the Cauchy-Riemann equations for a general Clifford algebra into grades using the Geometric Algebra formalism, and show that for the Spacetime Algebra $Cl(3,1)$ these equations are the equations for a self-dual source free Maxwell field, and for a massless uncharged Spinor. This shows a deep link between fundamental physics and the Clifford geometry of Spacetime.
description: 13 pages, as published
Additional file 6: of Virus-triggered exacerbation in allergic asthmatic children: neutrophilic airway inflammation and alteration of virus sensors characterize a subgroup of patients
Creators: name: Deschildre, Antoine
name: Pichavant, Muriel
name: Engelmann, Ilka
name: Langlois, Carole
name: Drumez, Elodie
name: Pouessel, Guillaume
name: Boileau, Sophie
name: Romero-Cubero, David
name: Decleyre-Badiu, Irina
name: Dewilde, Anny
name: Hober, Didier
name: Néve, Véronique
name: Thumerelle, Caroline
name: Lejeune, Stéphanie
name: Mordacq, Clémence
name: Gosset, Philippe
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Concentrations of cytokines in asthmatic patients prone to re-infection at steady state. Cytokines concentrations were measured during exacerbation or at steady state in plasma, sputum fluids and supernatants of MNC stimulated with Poly(I:C), Gardiquimod, lipopoly(I:C) or not (Medium). Patients only infected during the exacerbation (V + V-) were compared to those infected during both periods (V + V+). Results are expressed as pg/ml (median with interquartile range [IQR]). ND: not detectable, NE: Not evaluated. *:p
Pandalus spinidorsalis Rathbun 1906
Creators: name: Ahamed, Ferdous
name: Cardoso, Irene A.
name: Ahmed, Zoarder F.
name: Hossain, Md. Y.
name: Ohtomi, Jun
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Pandalidae
Pandalus
Pandalus spinidorsalis

description: P. spinidorsalis (Rathbun, 1906)
Description. Rostrum overreaching antennal scale, armed dorsally throughout length with 12–15 teeth, including 7–10 on carapace posterior to level of orbital margin, none with basal suture or barbed tip, armed ventrally with 4– 8 teeth; orbital margin with subquadrate lobe, thence trending posterodorsally in nearly straight line and, finally, bending sharply anterodorsally at extreme dorsal limit; abdomen without posteromesial tooth or median dorsal carina on 3rd somite; eye pyriform, maximum diameter about 1/8 carapace length, without ocellus; 3rd maxilliped with epipod, penultimate segment slightly more than 1/2 to 2/3 as long as terminal segment; 2nd pereopods unequal and dissimilar with epipod, right one shorter, more robust, and with 5 or 6 carpal articles, left one with 13– 16 carpal articles (Chace 1985).
Distribution. South China Sea, Philippines and Indonesia; at depths of 100–1250 m (Li 2006a).
description: Published as part of Ahamed, Ferdous, Cardoso, Irene A., Ahmed, Zoarder F., Hossain, Md. Y. & Ohtomi, Jun, 2017, An overview of the genus Plesionika Bate, 1888 (Decapoda, Caridea, Pandalidae) in Asian waters, pp. 575-593 in Zootaxa 4221 (5) on page 589, DOI: 10.11646/zootaxa.4221.5.6, http://zenodo.org/record/253575
Additional file 1: Table S1. of Molecular evolution of HIV-1 integrase during the 20Â years prior to the first approval of integrase inhibitors
Creators: name: Meixenberger, Karolin
name: Yousef, Kaveh
name: Smith, Maureen
name: Somogyi, Sybille
name: Fiedler, Stefan
name: Bartmeyer, Barbara
name: Osamah Hamouda
name: Bannert, Norbert
name: Kleist, Max Von
name: KĂźcherer, Claudia
Publisher: name: Figshare
Year: 2017
Subjects: subject: Pharmacology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Statistics assessing whether time-trending substitution could have resulted from inheritance. (DOCX 11Â kb)
Chromis lineata Fowler & Bean 1928
Creators: name: Andréfouët, Serge
name: Chen, Wei-Jen
name: Kinch, Jeff
name: Mana, Ralph
name: Russell, Barry C.
name: Tully, Dean
name: White, William T.
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Pomacentridae
Chromis
Chromis lineata

description: Chromis lineata Fowler & Bean 1928 —Lined chromis
Status at New Ireland. New record, based on a video of a specimen taken at Kavieng, Kavieng District, 0–11 m depth, St. KR 22, 5 June 2014 (identified by Barry C. Russell).
Distribution and habitat. New Ireland: 2.—General distribution: Christmas Island and Indonesia east to Palau and Solomon Islands, south to northern Great Barrier Reef (Australia) and Vanuatu. Found on upper edge of seaward reef slopes, 2–10 m depth. Marine.
description: Published as part of Andréfouët, Serge, Chen, Wei-Jen, Kinch, Jeff, Mana, Ralph, Russell, Barry C., Tully, Dean & White, William T., 2019, Checklist of the marine and estuarine fishes of New Ireland Province, Papua New Guinea, western Pacific Ocean, with 810 new records, pp. 1-360 in Zootaxa 4588 (1) on page 211, DOI: 10.11646/zootaxa.4588.1.1, http://zenodo.org/record/2988163
Parametrized uncertainties in the spectral function model of neutrino charged-current quasielastic interactions for oscillation analyses
Creators: name: Chakrani, J.
name: Dolan, S.
name: Avanzini, M. Buizza
name: Ershova, A.
name: Koch, L.
name: McFarland, K.
name: Megias, G. D.
name: Munteanu, L.
name: Pickering, L.
name: Skwarczynski, K.
name: Nguyen, V. Q.
name: Wret, C.
Publisher: name: arXiv
Year: 2023
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: A substantial fraction of systematic uncertainties in neutrino oscillation experiments stem from the lack of precision in modeling the nuclear target in neutrino-nucleus interactions. Whilst this has driven significant progress in the development of improved nuclear models for neutrino scattering, it is crucial that the models used in neutrino data analyses be accompanied by parameters and associated uncertainties that allow the coverage of plausible nuclear physics. Based on constraints from electron scattering data, we develop such a set of parameters, which can be applied to nuclear shell models, and test their application to the Benhar et al spectral function model. The parametrization is validated through a series of maximum likelihood fits to cross-section measurements made by the T2K and MINERvA experiments, which also permit an exploration of the power of near-detector data to provide constraints on the parameters in neutrino oscillation analyses.
description: 26 pages, 23 figures
Pandalus taiwanica Chan & Yu 2000
Creators: name: Ahamed, Ferdous
name: Cardoso, Irene A.
name: Ahmed, Zoarder F.
name: Hossain, Md. Y.
name: Ohtomi, Jun
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Pandalidae
Pandalus
Pandalus taiwanica

description: P. taiwanica Chan & Yu, 2000
Description. Rostrum 1.3–2.1 times as long as carapace, slightly curving downward at basal part but gently recurved upwards and straight after passing antennular peduncle, dorsal border generally armed with 6–8 teeth, with posterior 4–6 teeth restricted at basal part and forming a low crest while the anterior 1–3 teeth located anterior to level of antennular peduncle, lower border densely serrated with 22–38 small teeth; abdominal 3rd somite feebly arched dorsally and with posterior margin convex; eye subspherical and probably bearing indistinct ocellus; 3rd maxilliped bearing well developed epipod and long strip-like exopod, penultimate segment 1.2–1.5 times as long as distal segment, overreaching scaphocerite by 1/3 to almost entire distal segment; 2nd pereiopods subequal with well developed epipod, bearing 16–25 carpal articles (Chan & Yu 2000).
Distribution. Known only from Taiwan at depths of 150–300 m (Chan & Yu 2000).
description: Published as part of Ahamed, Ferdous, Cardoso, Irene A., Ahmed, Zoarder F., Hossain, Md. Y. & Ohtomi, Jun, 2017, An overview of the genus Plesionika Bate, 1888 (Decapoda, Caridea, Pandalidae) in Asian waters, pp. 575-593 in Zootaxa 4221 (5) on page 589, DOI: 10.11646/zootaxa.4221.5.6, http://zenodo.org/record/253575
Novel Deep Learning Approach to Detecting Binary Black Hole Mergers
Creators: name: Beveridge, Damon
name: McLeod, Alistair
name: Wen, Linqing
name: Wicenec, Andreas
Publisher: name: arXiv
Year: 2023
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: Gravitational wave detection has opened up new avenues for exploring and understanding some of the fundamental principles of the universe. The optimal method for detecting modelled gravitational-wave events involves template-based matched filtering and performing a multi-detector coincidence search in the resulting signal-to-noise ratio time series. In recent years, advancements in machine learning and deep learning have led to a flurry of research into using these techniques to replace matched filtering searches and for efficient and robust parameter estimation of the gravitational wave sources. This paper presents a feasibility study for a novel approach to detecting binary black hole gravitational wave signals, which utilizes deep learning techniques on the signal-to-noise ratio time series produced from matched filtering. We show that a deep-learning search can efficiently detect binary black hole gravitational waves from the signal-to-noise ratio time series in simulated Gaussian noise with simulated transient glitches. Furthermore, our search method can outperform a maximum SNR-based matched filtering search on simulated data of the Hanford and Livingston LIGO detectors in the presence of glitches. We further demonstrate that our approach can improve the detection sensitivity for binary black hole mergers at lower masses, relative to a baseline sensitivity of existing search pipelines and deep learning approaches. Lastly, since we are building upon the foundations of a matched filtering search pipeline, we can extract estimates for the signal-to-noise ratio and detector frame chirp mass of a gravitational wave event with similar accuracy as existing pipelines.
description: 15 pages, 11 figures
Additional file 7: of Virus-triggered exacerbation in allergic asthmatic children: neutrophilic airway inflammation and alteration of virus sensors characterize a subgroup of patients
Creators: name: Deschildre, Antoine
name: Pichavant, Muriel
name: Engelmann, Ilka
name: Langlois, Carole
name: Drumez, Elodie
name: Pouessel, Guillaume
name: Boileau, Sophie
name: Romero-Cubero, David
name: Decleyre-Badiu, Irina
name: Dewilde, Anny
name: Hober, Didier
name: Néve, Véronique
name: Thumerelle, Caroline
name: Lejeune, Stéphanie
name: Mordacq, Clémence
name: Gosset, Philippe
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: FOS: Biological sciences

description: Phenotype of blood antigen presenting cells in asthmatic patients prone to re-infection at steady state. Patients only infected during the exacerbation (V + V-) were compared to those infected during both periods (V + V+). The upper and the lower part showed the data collected in conventional and plasmacytoid DC (cDC and pDC, respectively) as well as in monocytes during the exacerbation and at steady state, respectively. Results are expressed as median of fluorescence intensity (MFI) with interquartile range [IQR]. (PDF 354 kb)
Relational Quantum Mechanics and Contextuality
Creators: name: Robson, Calum J.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Physics (quant-ph)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: This paper discusses the question of Stable Facts in Relational Quantum Mechanics. I examine how the approach to quantum logic in the consistent histories formalism can be used to clarify what information about a system can be shared between different observers.I suggest that the mathematical framework for Consistent Histories can and should be incorporated into RQM, whilst being clear on the interpretational differences between the two approaches. Finally I briefly discuss two related issues: the similarities and differences between special relativity and RQM and the recent Cross- Perspectival Links modification to RQM.
description: 25 pages, v3 as published
An Improved Drift Theorem for Balanced Allocations
Creators: name: Los, Dimitrios
name: Sauerwald, Thomas
Publisher: name: arXiv
Year: 2023
Subjects: subject: Probability (math.PR)
subject: Discrete Mathematics (cs.DM)
subject: FOS: Mathematics
subject: FOS: Computer and information sciences
subject: G.3; G.2.m; F.2.2
subject: 68W20, 68W27, 68W40, 60C05

description: In the balanced allocations framework, there are $m$ jobs (balls) to be allocated to $n$ servers (bins). The goal is to minimize the gap, the difference between the maximum and the average load.
 Peres, Talwar and Wieder (RSA 2015) used the hyperbolic cosine potential function to analyze a large family of allocation processes including the $(1+β)$-process and graphical balanced allocations. The key ingredient was to prove that the potential drops in every step, i.e., a drift inequality.
 In this work we improve the drift inequality so that (i) it is asymptotically tighter, (ii) it assumes weaker preconditions, (iii) it applies not only to processes allocating to more than one bin in a single step and (iv) to processes allocating a varying number of balls depending on the sampled bin. Our applications include the processes of (RSA 2015), but also several new processes, and we believe that our techniques may lead to further results in future work.
description: This paper refines and extends the content on the drift theorem and applications in arXiv:2203.13902. It consists of 38 pages, 7 figures, 1 table
Submicron Deformation Field Measurements II: Improved Digital Image Correlation
Creators: name: Vendroux, G.
name: Knauss, W. G.
Publisher: name: California Institute of Technology
Year: 1994

description: This is the second paper in a series of three devoted to the applicaiton of Scanning Tunneling Microscopy to mechanics problems. In this paper improvements to the Digital Image Correlation method are outlined, a technique that compares digital images of a specimen surface before and after deformation to deduce its (2-D) surface displacement field and strains. The necessity of using the framework of large deformation theory for accurately addressing rigid body rotations to reduce associated errors in the strain components is pointed out. In addition, the algorithm is extended to compute the three-dimensional surface displacement field from Scanning Tunneling Microscope data; also, significant improvements are achieved in the rate as well as the robustness of the convergence. For Scanning Tunneling Microscopy topographs the resolution yields 4.8 nm
for the in-plane and 1.5 nm for the out-of-plane  displacement components spanning an area of 10 μm x 10 μm.
description: This work has been supported by the National Science Foundation under grant MSS 9109973 for the hardware component of the STM. Also substantial assistance through the Office of Naval Research (grant N00014-91-5-1427), with Dr. Peter Schmidt as the monitor, and through support via Albert and Marguerite Ramond fellowships is gratefully acknowledged. In addition, the authors wish to thank H. Lu, graduate student, for his help in providing some of the experimental speckle/CCD data.
ESiWACE3 Milestone M3.3 - Datasets and compression methods contained in Jupyter notebooks are available online to allow for compression evaluations
Creators: name: Tyree, Juniper
name: Faghih-Naini, Sara
name: Järvinen, Heikki Johannes
name: Peters-von Gehlen, Karsten
name: Dueben, Peter
name: Yepes-Arbós, Xavier
Publisher: name: Zenodo
Year: 2025
Subjects: ESiWACE3
Milestone
data compression
weather
climate

description: This milestone documents the publication of an Online Laboratory for Data Compression in Climate Science and Meteorology that allows the testing of various compression methods for output of both weather and climate models. The Jupyter notebooks of the compression laboratory explore several datasets for ensemble weather predictions and climate simulations, apply lossy compression techniques in an easy-to-use way, and allow to perform a number of diagnostics to evaluate possible degradations due to compression. We also provide an online laboratory as a service, which hosts the compression laboratory notebooks and allows users to quickly jump in and explore compression without needing to install or setup anything. A detailed description of the data and tools can be found in deliverable D3.3 that is published alongside this milestone document.

Based on the developments of this milestone M3.3 and deliverable D3.3, the team working on the compression task will organise community outreach, including a hackathon, to explore compression techniques in detail over the next two years, and explore and document potential trade-offs between a reduction of the data that need to be stored, the computational cost to compress and de-compress the data, and the compression error that will impact diagnostics performed on top of the stored data.