cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 2: Figure S2. of Diesel exhaust alters the response of cultured primary bronchial epithelial cells from patients with chronic obstructive pulmonary disease (COPD) to non-typeable Haemophilus influenzae
Creators: name: Zarcone, Maria
name: Schadewijk, Annemarie Van
name: Duistermaat, Evert
name: Hiemstra, Pieter
name: Kooter, Ingeborg
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Mental Health
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Tunicamycin-induced unfolded protein response. Cellular response of 5 non-COPD and 7 COPD donors treated for 3 h with 5 μg/ml tunicamycin (Tm) which was added to the basal compartment. DDIT3/CHOP (2A) and PPP1R15A/GADD34 (2B) mRNA expression is shown as fold from untreated controls after normalization on two reference genes, ATP5b and RPL13A. (PDF 275 kb)
MOESM8 of Development of a genome-editing CRISPR/Cas9 system in thermophilic fungal Myceliophthora species and its application to hyper-cellulase production strain engineering
Creators: name: Liu, Qian
name: Ranran Gao
name: Jingen Li
name: Liangcai Lin
name: Junqi Zhao
name: Wenliang Sun
name: Chaoguang Tian
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Additional file 8. Nucleotide sequences of Cas9 expression cassettes.
Additional file 4: Figure S4. of Diesel exhaust alters the response of cultured primary bronchial epithelial cells from patients with chronic obstructive pulmonary disease (COPD) to non-typeable Haemophilus influenzae
Creators: name: Zarcone, Maria
name: Schadewijk, Annemarie Van
name: Duistermaat, Evert
name: Hiemstra, Pieter
name: Kooter, Ingeborg
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Plant Biology

description: TNFα-induced inflammatory, antimicrobial response and HSPA5/BiP induction. Cellular response of cultures from 5 non-COPD and 7 COPD donors treated for 3 h with 20 ng/ml of TNFα added to the basal medium. CXCL8 (4A), DEFB4A (4B), S100A7 (4C) and HSPA5/BiP (4D) mRNA expression is reported as fold from untreated controls after normalization on two reference genes, ATP5b and RPL13A. (PDF 524 kb)
Additional file 4: Figure S4. of Diesel exhaust alters the response of cultured primary bronchial epithelial cells from patients with chronic obstructive pulmonary disease (COPD) to non-typeable Haemophilus influenzae
Creators: name: Zarcone, Maria
name: Schadewijk, Annemarie Van
name: Duistermaat, Evert
name: Hiemstra, Pieter
name: Kooter, Ingeborg
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Mental Health
subject: Plant Biology

description: TNFα-induced inflammatory, antimicrobial response and HSPA5/BiP induction. Cellular response of cultures from 5 non-COPD and 7 COPD donors treated for 3 h with 20 ng/ml of TNFα added to the basal medium. CXCL8 (4A), DEFB4A (4B), S100A7 (4C) and HSPA5/BiP (4D) mRNA expression is reported as fold from untreated controls after normalization on two reference genes, ATP5b and RPL13A. (PDF 524 kb)
Additional file 1: Figure S1. of Diesel exhaust alters the response of cultured primary bronchial epithelial cells from patients with chronic obstructive pulmonary disease (COPD) to non-typeable Haemophilus influenzae
Creators: name: Zarcone, Maria
name: Schadewijk, Annemarie Van
name: Duistermaat, Evert
name: Hiemstra, Pieter
name: Kooter, Ingeborg
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Plant Biology

description: MUC5AC and FOXJ1 basal expression in COPD and control donors. MUC5AC (oligomeric mucus/gel-forming, marker for mucus producing cells, 1A) and FOXJ1 (forkhead box J1, marker for ciliated cells, 1B) mRNA expression in untreated controls from COPD and control donors. Data are shown as normalized expression based on two reference genes, ATP5b and RPL13A. Statistical differences were studied with an independent nonparametric samples t-test. (PDF 71Â kb)
Examining the process of science concept formation in infancy under the conditions of a Conceptual PlayWorld
Creators: name: O'Connor, Gillian Louise
Publisher: name: Monash University
Year: 2024
Subjects: classificationCode: 390302
subject: Early childhood education

description: This thesis explores how infants begin to develop early understandings of everyday science concepts within educational play-based settings, addressing a critical gap in early childhood science education research. Using a cultural historical approach, the thesis examines Fleer’s Conceptual PlayWorld as a model for science learning in infancy. Through two Educational Experiments conducted at an Early Childhood Education Years Education Center, findings reveal that Fleer’s Conceptual PlayWorld fosters collective imaginary play, enabling educators to engage infants in exploring science phenomena collectively. The study emphasises the pivotal role of props chosen and used by educators, as well as the specific conditions created by Conceptual PlayWorld in supporting infants' science learning experiences. This research contributes valuable insights into the process of science concept formation during infancy, supporting educators to engage infants in science learning experiences through play.
MOESM1 of Development of a genome-editing CRISPR/Cas9 system in thermophilic fungal Myceliophthora species and its application to hyper-cellulase production strain engineering
Creators: name: Liu, Qian
name: Ranran Gao
name: Jingen Li
name: Liangcai Lin
name: Junqi Zhao
name: Wenliang Sun
name: Chaoguang Tian
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Biotechnology
subject: Developmental Biology
subject: Marine Biology
subject: Plant Biology

description: Additional file 1: Figure S1. Phenotype of WT and constitutive Cas9-expressing strains. (A) Sodium dodecylsulfate-polyacrylamide gel electrophoresis of secreted protein of the WT and Cas9-OE after 4 days of culture on 2% Avicel. (B-E) Assays for protein concentration and xylanase, endoglucanase and exoglucanase activities of Cas9-OE and the WT in inducing medium with 2% Avicel after 3 and 4 days culture. (F) Mycelial dry weights of Cas9-OE and the WT from cultures on sucrose and Avicel. No significant difference (Tukey’s HSD, p > 0.5) was observed between Cas9-OE and the WT in the above assays.
MOESM6 of Differences in meristem size and expression of branching genes are associated with variation in panicle phenotype in wild and domesticated African rice
Creators: name: K. Ta
name: H. Adam
name: Y. Staedler
name: J. SchĂśnenberger
name: T. Harrop
name: J. Tregear
name: N. Do
name: P. Gantet
name: A. GhesquiĂ¨Re
name: S. Jouannic
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 6. Expression profiling of panicle-related genes during panicle development in O. barthii and O. glaberrima. qRT-PCR analysis of OSH1, LAX1, SPL14, APO2, TAW1, LHS1, OsMADS22, OsMADS55, miR529 and miR156 accumulation levels during panicle development (from stage 1 to stage 3) in O. barthii (black lines) and in O. glaberrima (gray lines). Target mRNA and small RNA accumulation levels were normalized using the rice Actin gene (LOC_Os03g50885) transcript and mature miR159 microRNA accumulation levels, respectively. Expression levels are relative to O. barthii B88 stage 1 (y-axis).
MOESM6 of Differences in meristem size and expression of branching genes are associated with variation in panicle phenotype in wild and domesticated African rice
Creators: name: K. Ta
name: H. Adam
name: Y. Staedler
name: J. SchĂśnenberger
name: T. Harrop
name: J. Tregear
name: N. Do
name: P. Gantet
name: A. GhesquiĂ¨Re
name: S. Jouannic
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 6. Expression profiling of panicle-related genes during panicle development in O. barthii and O. glaberrima. qRT-PCR analysis of OSH1, LAX1, SPL14, APO2, TAW1, LHS1, OsMADS22, OsMADS55, miR529 and miR156 accumulation levels during panicle development (from stage 1 to stage 3) in O. barthii (black lines) and in O. glaberrima (gray lines). Target mRNA and small RNA accumulation levels were normalized using the rice Actin gene (LOC_Os03g50885) transcript and mature miR159 microRNA accumulation levels, respectively. Expression levels are relative to O. barthii B88 stage 1 (y-axis).
MOESM2 of Development of a genome-editing CRISPR/Cas9 system in thermophilic fungal Myceliophthora species and its application to hyper-cellulase production strain engineering
Creators: name: Liu, Qian
name: Ranran Gao
name: Jingen Li
name: Liangcai Lin
name: Junqi Zhao
name: Wenliang Sun
name: Chaoguang Tian
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2: Figure S2. Verification of cre-1 gene deletions in selected transformants with co-transformation of only Cas9 and donor DNA, only sgRNA and donor DNA, or donor DNA alone. (A) Schematic of homologous recombination (HR) of the target gene cre-1. (B-G) PCR analysis of cre-1 deletion in M. thermophila (B-D) and M. heterothallica (E-G) with one primer (cre1-out-F) located upstream of the 5′ flanking region of the genomic DNA and the other (cre1-in-R) located in the 3′ flanking region of the genomic DNA. The expected length of disrupted transformants was 1.9 kb, while that of the host strain, used as a negative control, was 1.0 kb (rightmost lane).
Parasecia lasiurus Goff and Gettinger 1995
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Parasecia
Parasecia lasiurus

description: Parasecia lasiurus Goff and Gettinger, 1995:
NEO
Parasecia lasiurus Goff and Gettinger, 1995; Jacinavicius et al. 2018c; Stekolnikov 2021
Lorillatum lasiurus, Bassini-Silva et al. 2021
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 174, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Parviturbo Pilsbry & McGinty 1945
Creators: name: Herbert, David G.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Trochida
Skeneidae
Parviturbo

description: Genus Parviturbo Pilsbry & McGinty, 1945
Type species
Parviturbo rehderi Pilsbry & McGinty, 1945 (original designation), Recent, W Atlantic.
description: Published as part of Herbert, David G., 2024, The Vetigastropoda (Mollusca) of Walters Shoal, with descriptions of two new genera and thirty new species, pp. 1-119 in European Journal of Taxonomy 923 on page 84, DOI: 10.5852/ejt.2024.923.2445, http://zenodo.org/record/10727741
MOESM1 of Characterization of tubular liquid crystal structure in embryonic stem cell derived embryoid bodies
Creators: name: Xu, MengMeng
name: Jones, Odell
name: Liyang Wang
name: Zhou, Xin
name: Davis, Harry
name: Bryant, Joseph
name: Jianjie Ma
name: Isaacs, Willian
name: Xuehong Xu
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Genetics
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Computational Biology

description: Additional file 1. Additional information.
Additional file 3: Table S3. of Vitiligo blood transcriptomics provides new insights into disease mechanisms and identifies potential novel therapeutic targets
Creators: name: Dey-Rao, Rama
name: Animesh Sinha
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Hematology

description: Ontology enrichment analysis of VL DEGs (peripheral blood). (PDF 118 kb)
Phragmomphalina Herbert & Williams 2020
Creators: name: Herbert, David G.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Trochida
Solariellidae
Phragmomphalina

description: Genus Phragmomphalina Herbert & Williams, 2020
Type species
Phragmomphalina vilvensi Herbert & Williams, 2020 (original designation), Recent, south-western Indian Ocean.
description: Published as part of Herbert, David G., 2024, The Vetigastropoda (Mollusca) of Walters Shoal, with descriptions of two new genera and thirty new species, pp. 1-119 in European Journal of Taxonomy 923 on page 89, DOI: 10.5852/ejt.2024.923.2445, http://zenodo.org/record/10727741
MOESM2 of Development of a genome-editing CRISPR/Cas9 system in thermophilic fungal Myceliophthora species and its application to hyper-cellulase production strain engineering
Creators: name: Liu, Qian
name: Ranran Gao
name: Jingen Li
name: Liangcai Lin
name: Junqi Zhao
name: Wenliang Sun
name: Chaoguang Tian
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2: Figure S2. Verification of cre-1 gene deletions in selected transformants with co-transformation of only Cas9 and donor DNA, only sgRNA and donor DNA, or donor DNA alone. (A) Schematic of homologous recombination (HR) of the target gene cre-1. (B-G) PCR analysis of cre-1 deletion in M. thermophila (B-D) and M. heterothallica (E-G) with one primer (cre1-out-F) located upstream of the 5′ flanking region of the genomic DNA and the other (cre1-in-R) located in the 3′ flanking region of the genomic DNA. The expected length of disrupted transformants was 1.9 kb, while that of the host strain, used as a negative control, was 1.0 kb (rightmost lane).
Additional file 7: Table S5. of Vitiligo blood transcriptomics provides new insights into disease mechanisms and identifies potential novel therapeutic targets
Creators: name: Dey-Rao, Rama
name: Animesh Sinha
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Hematology

description: Interactome topology and over-connected genes. (PDF 106 kb)
Additional file 1: of Performance of a subsidised mammographic screening programme in Malaysia, a middle-income Asian country
Creators: name: Lee, Marianne
name: Shivaani Mariapun
name: Rajaram, Nadia
name: Soo-Hwang Teo
name: Cheng-Har Yip
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Mammogram Questionnaire. Malaysian 1000 Mammogram Study (MyMammoStudy). Patient questionnaire. (DOCX 568 kb)
Sustainability Unleashed through Innovation: Knowledge-Driven Strategies Igniting Labor Productivity in Small- and Medium-Sized Engineering Enterprises
Creators: name: Ahsan, Ali
name: Khalil, Wali Imran
name: Malik, Muhammad Omar
Publisher: name: Torrens University Australia
Year: 2025
Subjects: classificationCode: 350799
subject: Strategy, management and organisational behaviour not elsewhere classified
classificationCode: 330407
subject: Regulatory planning and development assessment

description: his research is focused on knowledge-based performance drivers, which are often intertwined with intellectual capital (IC); specifically, the value-added intellectual coefficient (VAIC) and its profound influence on labor productivity (LP), with the pivotal inputs of training and research and development (R&D) as moderating, in the realm of small- and medium-sized (engineering) enterprises (SMEs). The aim is to offer this as a sustainable model for practical implementation to empower engineering managers, donors, and policy researchers. The motivation catalyzes more informed decision-making investing in human or structural capital. It attempts to foster sustainable growth and societal stability through job creation within the knowledge-intensive engineering sector of developing countries. Methodologically, the research draws upon statistical analysis, employing Pearson’s correlation, multivariate regression, and model testing executed through specialized statistical software. The World Bank Enterprise Survey Instrument was used to collect data on 213 aviation-related firms. Primary data were collected for the years 2013–2022. Several hypotheses were developed between the variables expected to relate positively, because intellectual capital, training, and research and development should lead to better labor productivity. The findings revealed the critical issue of the misallocated investments in structural capital that this model brought forth. Furthermore, the notable contribution to national intellectual capital (NIC) studies is the significant VAIC value of 4.58 and an impressive labor productivity value of 6.78 within the knowledge-intensive ecosystem of SMEs. More insightful findings were the modest 17% positive variation attributable to the VAIC on LP, accompanied by an absence of significant influence exerted by training and R&D on this relationship. While underscoring the model’s overall validity, this intriguing discovery emphasizes the impact of intangibles on knowledge firms’ overall sustainability calculations, specifically structural capital, which accounts for a substantial 31% of labor productivity. The practical implication is that this model can be used to expose long-term financial performance hiccups through intellectual capital measures. The novelty is employing the labor productivity metric sourced from the engineering literature instead of the customary asset productivity (ATO) ratio from the IC literature.
Mendefinisi Ulang Mindset Pendidik Melalui Program PPG Prajabatan
Creators: name: Irfan Ananda, Ismail
name: Nanda, Afrian
Publisher: name: Haluan
Year: 2024

description: Artikel ini, yang diterbitkan di koran Haluan pada 17 Desember 2024, mengkaji fenomena distribusi talenta pendidik dalam lanskap pendidikan Indonesia. Tulisan ini menganalisis bagaimana Program Pendidikan Profesi Guru (PPG) Prajabatan berperan sebagai wahana peningkatan kompetensi guru sekaligus menghadirkan tantangan penempatan yang unik. Ditulis oleh Irfan Ananda Ismail dan Nanda Afrian, mahasiswa Doktoral Pendidikan IPA UNP dan delegasi UNP PPG Prajabatan Gelombang 2 2023, artikel ini mendalami paradoks distribusi guru antara wilayah perkotaan dan pedesaan serta membahas transformasi yang dibutuhkan dalam ekosistem pendidikan Indonesia. Para penulis menyoroti bagaimana program ini menangani masalah kompleks terkait penempatan guru, aksesibilitas, dan pengembangan profesional di berbagai wilayah geografis Indonesia, sambil menekankan pentingnya pergeseran paradigma dalam perencanaan pendidikan nasional.Artikel ini memberikan wawasan berharga tentang upaya Indonesia dalam meningkatkan pemerataan pendidikan melalui program pengembangan profesional guru, menjadikannya kontribusi penting bagi literatur kebijakan pendidikan dan pengembangan profesional guru di Indonesia
Additional file 3: Table S2 of Diversity and enterotype in gut bacterial community of adults in Taiwan
Creators: name: Liang, Chao
name: Han-Chi Tseng
name: Chen, Hui-Mei
name: Wei-Chi Wang
name: Chih-Min Chiu
name: Jen-Yun Chang
name: Kuan-Yi Lu
name: Shun-Long Weng
name: Tzu-Hao Chang
name: Chao-Hsiang Chang
name: Chen-Tsung Weng
name: Hwei-Ming Wang
name: Hsien-Da Huang
Publisher: name: Figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Pathway enrichment analysis. (PDF 235Â kb)
Solariella Wood 1842
Creators: name: Herbert, David G.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Trochida
Solariellidae
Solariella

description: Genus Solariella Wood, 1842
Type species
Solariella maculata Wood, 1842 (monotypy), Pliocene, England.
Remarks
This species belongs to the southern African radiation previously referred to the genus Spectamen Iredale, 1924. However, recent molecular data indicate that other species from this southern African radiation do not cluster with the Australian Spectamen, but cluster instead with Solariella (S.T. Williams pers. com. 2023). Thus, for the present, I refer this new species to Solariella.
description: Published as part of Herbert, David G., 2024, The Vetigastropoda (Mollusca) of Walters Shoal, with descriptions of two new genera and thirty new species, pp. 1-119 in European Journal of Taxonomy 923 on page 92, DOI: 10.5852/ejt.2024.923.2445, http://zenodo.org/record/10727741
MOESM4 of Differences in meristem size and expression of branching genes are associated with variation in panicle phenotype in wild and domesticated African rice
Creators: name: K. Ta
name: H. Adam
name: Y. Staedler
name: J. SchĂśnenberger
name: T. Harrop
name: J. Tregear
name: N. Do
name: P. Gantet
name: A. GhesquiĂ¨Re
name: S. Jouannic
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Additional file 4. longitudinal sections and 3D models of O. glaberrima and O. barthii panicles at very early developmental stages using X-Ray tomography.
Additional file 1: Table S1. of Vitiligo blood transcriptomics provides new insights into disease mechanisms and identifies potential novel therapeutic targets
Creators: name: Dey-Rao, Rama
name: Animesh Sinha
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: Hematology

description: Potential disease relevant GO biological processes associated with down-regulated genes discovered by unsupervised hierarchical clustering. (PDF 87 kb)
Parasecia longicalcar
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Parasecia
Parasecia longicalcar

description: Parasecia longicalcar (Brennan and Jones, 1960):
NEO
Trombicula longicalcar Brennan and Jones, 1960; Brennan & Yunker 1966a
Fonsecia (Parasecia) longicalcar, Loomis 1966a; Brennan 1969c
Fonsecia (Euneocula) longicalcar, Vercammen-Grandjean 1965d [manueli group]
Parasecia longicalcar, Brennan & van Bronswijk 1975; Bassini-Silva et al. 2021
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on pages 174-175, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Gibbula Risso 1826
Creators: name: Herbert, David G.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Trochida
Trochidae
Gibbula

description: Genus Gibbula Risso, 1826
Type species
Trochus magus Linnaeus, 1758 (subsequent designation, Herrmannsen 1847: 473), Recent, NE Atlantic and Mediterranean.
Remarks
Gibbula s. lat. has been shown to be a paraphyletic taxon (Uribe et al. 2016; Affenzeller et al. 2017) and it is unlikely that the species described below and the South African species of ‘ Gibbula ’, to which it is undoubtedly related, in fact belong to Gibbula s. str. This is a matter undergoing further investigation and the referral of this new taxon to Gibbula is a temporary measure.
description: Published as part of Herbert, David G., 2024, The Vetigastropoda (Mollusca) of Walters Shoal, with descriptions of two new genera and thirty new species, pp. 1-119 in European Journal of Taxonomy 923 on page 94, DOI: 10.5852/ejt.2024.923.2445, http://zenodo.org/record/10727741
Additional file 6: Table S4. of Vitiligo blood transcriptomics provides new insights into disease mechanisms and identifies potential novel therapeutic targets
Creators: name: Dey-Rao, Rama
name: Animesh Sinha
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Hematology

description: Enrichment by Protein Function. (PDF 97 kb)
MOESM2 of Differences in meristem size and expression of branching genes are associated with variation in panicle phenotype in wild and domesticated African rice
Creators: name: K. Ta
name: H. Adam
name: Y. Staedler
name: J. Schönenberger
name: T. Harrop
name: J. Tregear
name: N. Do
name: P. Gantet
name: A. Ghesquière
name: S. Jouannic
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Additional file 2. Illustration of X-ray tomography reconstructed images of the sample scanning and 3D model. a Reconstructed transverse section (y–x view) of the sample, b reconstructed longitudinal (x–z view) section of the sample, c reconstructed longitudinal (y–z view) section of the sample, d 3D model of the sample. Meristem width was measured on a reconstructed transverse section at 40 μm from the top of the meristem. Scale bars = 200 μm.
Kaiparathina Laws 1841
Creators: name: Herbert, David G.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Trochida
Trochidae
Kaiparathina

description: Genus Kaiparathina Laws, 1841
Type species
Kaiparathina praecellens Laws, 1941 (original designation), Miocene, New Zealand.
description: Published as part of Herbert, David G., 2024, The Vetigastropoda (Mollusca) of Walters Shoal, with descriptions of two new genera and thirty new species, pp. 1-119 in European Journal of Taxonomy 923 on page 96, DOI: 10.5852/ejt.2024.923.2445, http://zenodo.org/record/10727741
Additional file 10: Table S7. of Vitiligo blood transcriptomics provides new insights into disease mechanisms and identifies potential novel therapeutic targets
Creators: name: Dey-Rao, Rama
name: Animesh Sinha
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Hematology

description: Significant paired nodes within over-connected functional genes. (PDF 192 kb)
Stomatella Lamarck 1816
Creators: name: Herbert, David G.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Trochida
Trochidae
Stomatella

description: Genus Stomatella Lamarck, 1816
Type species
Stomatella auricula Lamarck, 1816 (subsequent designation, Anton 1838: 32), Recent, Indo-West Pacific.
description: Published as part of Herbert, David G., 2024, The Vetigastropoda (Mollusca) of Walters Shoal, with descriptions of two new genera and thirty new species, pp. 1-119 in European Journal of Taxonomy 923 on page 102, DOI: 10.5852/ejt.2024.923.2445, http://zenodo.org/record/10727741
MOESM9 of Differences in meristem size and expression of branching genes are associated with variation in panicle phenotype in wild and domesticated African rice
Creators: name: K. Ta
name: H. Adam
name: Y. Staedler
name: J. SchĂśnenberger
name: T. Harrop
name: J. Tregear
name: N. Do
name: P. Gantet
name: A. GhesquiĂ¨Re
name: S. Jouannic
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 9. List of primers used in this study. The underlined sequences correspond to the T7 promoter used for RNA probe synthesis. The sequences in italic correspond to the stem-loop region used for stem-loop qRT-PCRs. Bases shown in square brackets were LNA-modified for in situ hybridization.
MOESM9 of Differences in meristem size and expression of branching genes are associated with variation in panicle phenotype in wild and domesticated African rice
Creators: name: K. Ta
name: H. Adam
name: Y. Staedler
name: J. SchĂśnenberger
name: T. Harrop
name: J. Tregear
name: N. Do
name: P. Gantet
name: A. GhesquiĂ¨Re
name: S. Jouannic
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 9. List of primers used in this study. The underlined sequences correspond to the T7 promoter used for RNA probe synthesis. The sequences in italic correspond to the stem-loop region used for stem-loop qRT-PCRs. Bases shown in square brackets were LNA-modified for in situ hybridization.
Additional file 1 of Sequence-specific bias correction for RNA-seq data using recurrent neural networks
Creators: name: Zhang, Yao-Zhong
name: Yamaguchi, Rui
name: Imoto, Seiya
name: Miyano, Satoru
Publisher: name: Figshare
Year: 2017
Subjects: subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology

description: Supplement Figures. (PDF 577 kb)
Stomatella auricula Lamarck 1816
Creators: name: Herbert, David G.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Trochida
Trochidae
Stomatella
Stomatella auricula

description: Stomatella auricula Lamarck, 1816
Fig. 41A–C
Stomatella auricula Lamarck, 1816: pl. 450 fig. 1a–b.
Type loc.: not originally cited, but later given as “ l’Océan des Moluques et de la Nouvelle-Hollande ” (Lamarck 1822: 210).
Stomatella auricula – Herbert 2015: 61 (further synonymy and chresonymy).
Material examined
WALTERS SHOAL • 1 empty shell; slopes, stn DW4887; 33°17′ S, 43°57′ E; depth 599–640 m; 3 May 2017; MNHN.
Remarks
This specimen is quite distinct from the material described below. The rate of expansion of the generating curve is less rapid and the profile of the shell in apical view is thus less elongate and the spire is proportionately larger. It differs further in that the spiral sculpture is much weaker, comprising only relatively widely-spaced, microscopic, incised striae on the apical surface, though these are stronger at the periphery and on the base. It is much closer to Stomatella auricula, a shallow-water species common in the tropical south-western Indian Ocean (Herbert 2015), and I identify it as such. It is, however, difficult to explain the occurrence of a single, relatively fresh, shell in comparatively deep water on Walters Shoal, when it is evidently absent on the summit region. It seems likely to stem from stochastic colonisation by isolated individuals, this shell having been transported post-mortem down-slope.
description: Published as part of Herbert, David G., 2024, The Vetigastropoda (Mollusca) of Walters Shoal, with descriptions of two new genera and thirty new species, pp. 1-119 in European Journal of Taxonomy 923 on page 102, DOI: 10.5852/ejt.2024.923.2445, http://zenodo.org/record/10727741
Simple and Rapid Characterization of Sarawak Stingless Bee Honey Using Melissopalynological and ATR-FTIR Analysis
Creators: name: Shah, Rohan
name: Bong, Zhang Ru
name: Chee, Xavier Wezen
name: Hwang, Siaw San
name: Ginjom, Irine Runnie Henry
Publisher: name: Torrens University Australia
Year: 2025
Subjects: classificationCode: 300607
subject: Food technology

description: Stingless bee honey (SBH) is gaining popularity for its unique flavour and potential nutritional and health benefits. Due to its low yield, SBH is usually more expensive than common honey. Moreover, SBH is also commonly sold as raw honey with higher moisture content, which could jeopardize its shelf life, quality, and safety if not stored properly. Therefore, a rapid method is required to characterize stingless bee honey for authentication and quality assurance. This study aimed to categorize SBH samples from Sarawak using two simple and rapid methods, namely the pollen or melissopalynological analysis and attenuated-total-reflectance Fourier-transform-infrared (ATR-FTIR). The melissopalynological analysis showed that all honey samples analyzed are multifloral honey. Principal Component Analysis (PCA) on the ATR-FTIR spectra clearly illustrated a clear separation between normal honey and SBH; and between raw SBH and processed SBH. Overall, this study provides important insights into the characterization of SBH from Sarawak using two simple and rapid methods. Further research could expand on these findings and contribute to the development of the SBH industry in Malaysia.
Bolma Risso 1826
Creators: name: Herbert, David G.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Trochida
Turbinidae
Bolma

description: Genus Bolma Risso, 1826
Type species
Turbo rugosus Linnaeus, 1767 (monotypy), Miocene to Recent, NE Atlantic and Mediterranean.
Remarks
Specimens of Bolma from Walters Shoal are being studied by Magalie Castelin (MNHN) as part of an on-going molecular phylogenetic investigation of the genus across the Indo-West Pacific, building upon work already published (Castelin et al. 2017). Analysis of CO1 sequence data for specimens of both species discussed below confirms that they cluster with other western Indian Ocean samples of the species to which they are here assigned (Castelin unpublished data).
description: Published as part of Herbert, David G., 2024, The Vetigastropoda (Mollusca) of Walters Shoal, with descriptions of two new genera and thirty new species, pp. 1-119 in European Journal of Taxonomy 923 on page 106, DOI: 10.5852/ejt.2024.923.2445, http://zenodo.org/record/10727741
MOESM8 of Differences in meristem size and expression of branching genes are associated with variation in panicle phenotype in wild and domesticated African rice
Creators: name: K. Ta
name: H. Adam
name: Y. Staedler
name: J. SchĂśnenberger
name: T. Harrop
name: J. Tregear
name: N. Do
name: P. Gantet
name: A. GhesquiĂ¨Re
name: S. Jouannic
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Additional file 8. Promoter sequence comparisons of LHS1, APO2 and SPL14 orthologous genes in O. glaberrima and O. barthii. Vertical bars represent SNPs in O. barthii vs. O. glaberrima. Putative transcription factor binding sites related to SNPs are indicated by arrowheads (indicating site orientation). These binding sites are described as being involved in hormone response (ABA and jasmonate, JAS) [62, 63, 65] and in RNA polymerase II transcription activity [64]. The sequence alignments of these sites between O. barthii (Ob) and O. glaberrima (Og) are indicated on the right, and the corresponding polymorphic site is highlighted.
Bolma recens
Creators: name: Herbert, David G.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Trochida
Turbinidae
Bolma
Bolma recens

description: Bolma recens (Dell, 1967)
Fig. 44E–F
Incilaster recens Dell, 1967: 305, figs 6–7, text-fig. 8.
Type loc.: Kiwi Seamount, 30.75° S, 173.25° E, ca 500 km north of New Zealand, 358–677 m.
Bolma clemenceae Bozzetti, 2010: 11.
Type loc.: Lavanono, southern Madagascar.
Bolma recens – Beu & Ponder 1979: 32, fig. 11h–i. — Marshall 1979: 549. — Alf & Kreipl 2011: 37, pls 152–154. — Castelin et al. 2017 (molecular sequence data). — Araya, Alf & Aliaga 2023: 427, fig. 1e–h.
Material examined
WALTERS SHOAL – slopes • 1 living specimen; stn DW4890; 33°09′ S, 43°59′ E; depth 492–588 m; 4 May 2017; DNA tissue sample; MNHN-IM-2013-64409 • 1 living specimen; same collection data as for preceding; DNA tissue sample; MNHN-IM-2013-64411 • 1 living specimen; same collection data as for preceding; DNA tissue sample; MNHN-IM-2013-64412 • 2 empty shells, juvenile; stn DW4898; 33°09′ S, 44°01′ E; depth 652–668 m; 6 May 2017; MNHN.
Distribution
Widely distributed in the Indo-West Pacific; recorded from the northern Mozambique Channel, southern Madagascar, the Philippines (Araya, Alf & Aliaga 2023) and the south-western Pacific (Castelin et al. 2017). On Walters Shoal it was found alive at only one station (492–588 m), dredged on coarse sand with rocks.
Remarks
Bolma recens is easily separated from B. mainbaza on account of its strongly bicarinate whorl periphery, with fine spiral cords between the peripheral carinae. The spire angle is also usually broader. Of the two species, B. recens is evidently considerably less abundant on Walters Shoal and the limited data available suggest that it occurs at somewhat greater depths (living specimens> 400 m).
description: Published as part of Herbert, David G., 2024, The Vetigastropoda (Mollusca) of Walters Shoal, with descriptions of two new genera and thirty new species, pp. 1-119 in European Journal of Taxonomy 923 on pages 109-110, DOI: 10.5852/ejt.2024.923.2445, http://zenodo.org/record/10727741
Additional file 9: Table S6. of Vitiligo blood transcriptomics provides new insights into disease mechanisms and identifies potential novel therapeutic targets
Creators: name: Dey-Rao, Rama
name: Animesh Sinha
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Hematology

description: Transcriptional regulation network list from VL-blood associated experimental dataset. (PDF 196 kb)
Agelenidae C. L. KOCH 1837
Creators: name: Bolzern, Angelo
name: Burckhardt, Daniel
name: Hänggi, Ambros
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Agelenidae

description: FAMILY AGELENIDAE C. L. KOCH, 1837
‘Agelenides’ C. L. Koch, 1837: 13. Diagnosis: ‘Small to medium sized araneomorph spiders; three tarsal claws; ecribellate; entelegyne; eight eyes; posterior spinnerets two-segmented, long and slender, with apical segment tapering towards tip; tarsi with trichobothria increasing in length towards tip; colulus paired’. (Jocqué & Dippenaar- Schoeman, 2006: 60).
All agelenids build a kind of sheet web with a special tube- or funnel-shaped retreat. Their webs are attached to various substrates (vegetation, rocks, caves, buildings).
Recently, the Coelotinae and the cribellate genus Tamgrinia Lehtinen, 1967, were placed into Agelenidae (Miller et al., 2010). Therefore, the family diagnosis provided by Jocqué & Dippenaar-Schoeman (2006) should be adjusted. In this work, we focus on members of the subfamily Ageleninae and exclude Coelotinae.
In the following we list the European species of Eratigena gen. nov., Malthonica, and Tegenaria in alphabetical order. For each taxon, taxonomically and nomenclaturally relevant references are provided. Bonnet (1959), van Helsdingen (2011), and Platnick (2012) provide details of species distribution. Details of the examined type material are listed in the following order: country: state/region/canton: commune, locality, number of specimens (comments, collection code, voucher number), collecting date, collector(s). Details for additional nontype material examined are listed in Appendix S1.
description: Published as part of Bolzern, Angelo, Burckhardt, Daniel & Hänggi, Ambros, 2013, Phylogeny and taxonomy of European funnel-web spiders of the Tegenaria-Malthonica complex (Araneae: Agelenidae) based upon morphological and molecular data, pp. 723-848 in Zoological Journal of the Linnean Society (Zool. J. Linn. Soc.) (Zool. J. Linn. Soc.) 168 (4) on page 738, DOI: 10.1111/zoj.12040, http://zenodo.org/record/5282985
MOESM8 of Differences in meristem size and expression of branching genes are associated with variation in panicle phenotype in wild and domesticated African rice
Creators: name: K. Ta
name: H. Adam
name: Y. Staedler
name: J. SchĂśnenberger
name: T. Harrop
name: J. Tregear
name: N. Do
name: P. Gantet
name: A. GhesquiĂ¨Re
name: S. Jouannic
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Additional file 8. Promoter sequence comparisons of LHS1, APO2 and SPL14 orthologous genes in O. glaberrima and O. barthii. Vertical bars represent SNPs in O. barthii vs. O. glaberrima. Putative transcription factor binding sites related to SNPs are indicated by arrowheads (indicating site orientation). These binding sites are described as being involved in hormone response (ABA and jasmonate, JAS) [62, 63, 65] and in RNA polymerase II transcription activity [64]. The sequence alignments of these sites between O. barthii (Ob) and O. glaberrima (Og) are indicated on the right, and the corresponding polymorphic site is highlighted.
title: Error Investigation of Public Signs and Foreigners’ Perceptions of Business Signs in Bangkok: A Case Study of Sathorn and Sukhumvit Areas
Creators: name: Siraprapa Kongkaew
Publisher: name: Faculty of Liberal Arts, Prince of Songkla University
publisherIdentifierScheme: ROR
Year: 2025
Subjects: Linguistic Landscape
Linguistic Landscape in Thailand
Language Policy
Intelligibility on Signs
Grammatical Errors

description: Journal of Liberal Arts, Prince of Songkla University, 17, 1, 281659, pp.1-19