cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1: of Future requirements for and supply of ophthalmologists for an aging population in Singapore
Creators: name: Ansah, John
name: Korne, Dirk De
name: Bayer, Steffen
name: Pan, Chong
name: Thiyagarajan Jayabaskar
name: Matchar, David
name: Lew, Nicola
name: Phua, Andrew
name: Koh, Victoria
name: Ecosse Lamoureux
name: Quek, Desmond
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Molecular Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Science Policy

description: Model validation for selected variables. a Number of ophthalmologists, b demand for eye care.
Chamaecytisus hirsutus subsp. hirsutus
Creators: name: Info Flora
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Chamaecytisus
Chamaecytisus hirsutus
Chamaecytisus hirsutus (l.) link subsp. hirsutus

description: Chamaecytisus hirsutus (L.) Link subsp. hirsutus
Unterart ISFS: 107250 Checklist: 1011765 Fabaceae Chamaecytisus Chamaecytisus hirsutus aggr. Chamaecytisus hirsutus (L.) Link Chamaecytisus hirsutus (L.) Link subsp. hirsutus
Bestimmungsschlüssel
ZusammenfassungKEINE ANGABE
Status Nationale Priorität: --
Internationale Verantwortung: --
Ökologie
Lebensraum Lebensraumnach Delarze & al. 2015
KEINE ANGABE
Ökologische Zeigerwerte nach Landolt & al. (2010)
BodenfaktorenKlimafaktorenSalztoleranzFeuchtezahl F--Lichtzahl L--Salzzeichen--Reaktionszahl R--Temperaturzahl T--Nährstoffzahl N--Kontinentalitätszahl K--
Nomenklatur
Gültiger Name (Checklist 2017):Chamaecytisus hirsutus(L.) Link subsp.hirsutus
Volksname
Deutscher Name: -- Nom français: -- Nome italiano: --
Übereinstimmung mit anderen Referenzwerken
RelationNomReferenzwerkeNo=Chamaecytisus hirsutus (L.) Link subsp. hirsutusChecklist 2017107250
= Taxon stimmt mit akzeptiertem Taxon überein (Checklist 2017)  Taxon enthält (neben anderen) auch das akzeptierte Taxon (Checklist 2017)
Kommentare aus der Checklist 2017 Neue Unterart: Die Art wurde bisher (SISF-2) nicht in Unterarten aufgeteilt oder die Unterteilung wurde bisher nicht akzeptiert. Im Gebiet der Checklist 2017 kommt nur diese Unterart vor. Sie ist der Unterart Ch. h. subsp. pumilus (De Not.) Kerguélen aus den Südwestalpen gegenübergestellt. Die Zuordnung zur Unterart sollte nur erfolgen, wenn ihre Bestimmung als solche sichergestellt ist. Checklist
Status Indigenat: Indigen
Liste der gefährdeten Pflanzen IUCN(nach Walter & Gillett 1997): Nein Status Rote Liste national
KEINE ANGABE
Status nationale Priorität /Verantwortung
Nationale Priorität--Massnahmenbedarf--Internationale Verantwortung--Überwachung Bestände--
Schutzstatus
Kein internationaler, nationaler oder kantonaler Schutz
description: Published as part of Info Flora, 2021,
Mes années Cuba par Eduardo Manet. Grasset 320 pages, 19€
Creators: name: Inconnu
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2024
Subjects: Littérature
''Mes années Cuba''

description: Critique de l’ouvrage ''Mes années Cuba'' d’Eduardo Manet, publié chez Grasset.
description: Reseña del libro ''Mes années Cuba'' (''Mis años Cuba'') de Eduardo Manet, publicado por la Editorial Grasset.
description: Notes : Informations de publication manuscrites au-dessus de l’article. La couverture du livre illustre l’article.
description: Titre de la publication : Le Télégramme de Brest
description: Périodicité : Quotidien.
description: Source: EM-E1-2004-05-09
description: Source: Localisation de la ressource : Centre de Recherches Latino-Américaines (CRLA–Archivos, ITEM UMR8132). MSHS - Bât. A5, 1er étage 5 rue Théodore Lefebvre - TSA21103. 86073 Poitiers cedex 9.
Chamaecytisus hirsutus
Creators: name: Info Flora
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Chamaecytisus
Chamaecytisus hirsutus

description: Chamaecytisus hirsutus aggr.
Art ISFS: 107270 Checklist: 1011755 Fabaceae Chamaecytisus Chamaecytisus hirsutus aggr. Enthält: Chamaecytisus hirsutus (L.) Link Chamaecytisus purpureus (Scop.) Link Chamaecytisus supinus (L.) Link
Bestimmungsschlüssel
ZusammenfassungKEINE ANGABE
Status Nationale Priorität: --
Internationale Verantwortung: --
Ökologie
Lebensraum Lebensraumnach Delarze & al. 2015
KEINE ANGABE
Ökologische Zeigerwerte nach Landolt & al. (2010)
BodenfaktorenKlimafaktorenSalztoleranzFeuchtezahl F--Lichtzahl L--Salzzeichen--Reaktionszahl R--Temperaturzahl T--Nährstoffzahl N--Kontinentalitätszahl K--
Nomenklatur
Gültiger Name (Checklist 2017):Chamaecytisus hirsutusaggr.
Volksname
Deutscher Name: -- Nom français: -- Nome italiano: --
Übereinstimmung mit anderen Referenzwerken
RelationNomReferenzwerkeNo=Chamaecytisus hirsutus aggr.Checklist 2017107270
= Taxon stimmt mit akzeptiertem Taxon überein (Checklist 2017)  Taxon enthält (neben anderen) auch das akzeptierte Taxon (Checklist 2017)
Kommentare aus der Checklist 2017 Gegenüber SISF-2 neu definiertes Aggregat. Checklist
Status Indigenat: Indigen
Liste der gefährdeten Pflanzen IUCN(nach Walter & Gillett 1997): Nein Status Rote Liste national
KEINE ANGABE
Status nationale Priorität /Verantwortung
Nationale Priorität--Massnahmenbedarf--Internationale Verantwortung--Überwachung Bestände--
Schutzstatus
Kein internationaler, nationaler oder kantonaler Schutz
description: Published as part of Info Flora, 2021,
Additional file 1: of Efficient generation of hepatic cells from mesenchymal stromal cells by an innovative bio-microfluidic cell culture device
Creators: name: Yen, Meng-Hua
name: Yuan-Yi Wu
name: Yi-Shiuan Liu
name: Rimando, Marilyn
name: Ho, Jennifer
name: Lee, Oscar
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Inorganic Chemistry
subject: Hematology
subject: Plant Biology

description: Is supplementary materials and methods: Table S1 presenting the sequence of quantitative PCR primers for MSCs, Figure S1 showing the microfluidic device with larger culture chamber used for the study, Figure S2 showing the processes of proliferation (A) and hepatic differentiation (B) of MSCs in the culture dish and microfluidic device, Figure S3 showing the growth curve of human MSCs cultured in the microfluidic device and culture dish from 0 to 9Â days, Figure S4 showing the comparative expression of surface markers in mouse MSCs cultured in static culture dish and microfluidic device at day 0Â and day 3, and Figure S5 showing the simulation of culture medium diffusion in a circle cultural chamber. The flow field showed an uneven flow profile in a circle cultural chamber. The dimension and parameters of flow field were based on a previous study [20]. (DOCX 979 kb)
Streblognathus aethiopicus
Creators: name: Robertson, H. G.
Publisher: name: Zenodo
Year: 2002
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Streblognathus
Streblognathus aethiopicus
Ponera
Ponera aethiopica

description: Streblognathus aethiopicus (F. Smith)
Ponera aethiopica F. Smith, 1858: 91, plate VI figs 19, 20. Worker and male described by Arnold (1915: 41-43).
Streblognathus aethiopicus (F. Smith): Mayr 1862: 716.
WORKER. Description of worker matches that for the genus but with the following additional species-specific characters. Mandibles castaneous with black border.
Size. Head width 4.14-4.80 mm (n = 11); Head length 4.21-4.95 mm; Eye length 0.86- 1.03 mm; Scape length 4.32-5.11 mm (n = 11); Pronotal width 2.82-3.26 mm; Mesonotalpropodeal length 5.56-6.32 mm; Hind tibia length 4.80-5.54 mm; Cephalic index 94-100; Scape index 102-113; Eye index 20-23 (n = 10 except for Head width and Scape length which include the measurements of the holotype).
MALE. Description of male matches that of the genus, but with the following species-specific characters.
Size. Head width 2.55-2.99 mm; Head length 2.00-2.33 mm; Eye length 1.49-1.65 mm; Ocellus diameter 0.55-0.69 mm; Forewing length 14.42-17.20 mm; Hind tibia length 4.61-5.22 mm; Cephalic index 124-132; Eye index 54-58 (n = 5).
Diagnosis. See under S. peetersi.
Distribution and habitat. All records are from between 33 and 34 degrees latitude S, within which it has been collected from Willowmore in the west to Grahamstown and near Port Alfred in the east (Fig. 6). Found in open habitats, such as Nama Karoo. It seems to occur in small isolated populations, thus following a metapopulation structure.
Type material examined. Ponera aethiopica. Label details and measurement of scape and head width supplied to me by B. Bolton from holotype in The Natural History Museum, London. SOUTH AFRICA: ' S. Africa. 40.6.26.613 '. The accessions register gives the following information for these numbers: ' Cape Colony, bought of Dr Krauss'.
Additional material examined. Grahamstown, 33°42'S 26°32'E, iii. 1997, A. Weaving (SAMC); same locality but 26.i.1958, J.H. Grobler (SAMC); same locality but v.1957, Nat. Mus. S. Rhodesia (SAMC); Hilton [farm near Grahamstown], 33°45'S 26°21'E, 11- 16.xii.1979, F.W. Gess (AMGS); Kowie [= Port Alfred], 33°25'S 26°53'E, 1891, (SAMC); Thursford Farm, 33°48'S 26°22'E, 30.vii.1983, H.G. Robertson (SAMC); Middelburg Division, 31'S 25'E, no date, SAM Museum Expedition (SAMC); Willowmore, 33°42'S 23°29'E, ii.1915, H. Brauns (SAMC); same data but. xii.1912 (SAMC); same data but 1911 (TMSA).
description: Published as part of Robertson, H. G., 2002, Revision of the ant genus Streblognathus (Hymenoptera: Formicidae: Ponerinae)., pp. 1-16 in Zootaxa 97 on page 10
Invasive Humans: The legacy of European colonialism on biodiversity loss
Creators: name: Dando, Dylan
Publisher: name: Zenodo
Year: 2024

description: -- Outdated due to error in R code, please refer to newest version (v2) --

 

Raw data and R code for models and graphs from the undergraduate thesis, "Invasive Humans: The legacy of European colonialism on biodiversity loss". 

 

Raw data headers are as follows: 

country – Name of countrythreatAnimal – Total number of threatened animal species in a country (IUCN Red List)nonThreatAnimal – Total number of non-threatened animal species in a country (IUCN Red List)totalAnimal – Total number of animal species in a country (IUCN Red List)threatPlant – Total number of threatened plant species in a country (IUCN Red List)nonThreatPlant – Total number of non-threatened plant species in a country (IUCN Red List)totalPlant – Total number of plant species in a country (IUCN Red List)endemicSpp – Total number of endemic animal species in a country (IUCN Red List)giniIndex – Gini Index, a measure of economic inequality in a country (from Standardized World Income Inequality Database)gdpPPP – Gross domestic product per capita based on purchasing power parity (International dollars; World Bank Development Indicators Database)colYN – Boolean variable: 0 = No history of European colonisation; 1 = History of European colonisation (COLDAT Database)colStart – Mean start date of European colonisation (0 = NA; COLDAT Database)colEnd – Mean end date of European colonisation (0 = NA; COLDAT Database)yearsCol – Range of colStart and colEndlandArea – Terrestrial land area (km2; World Bank Development Indicators Database)averageExport – Average percentage of merchandise exported to high-income countries (World Bank Development Indicators Database)
Additional file 3: Figure S1. of Immuno-detection of dioxins using a recombinant protein of aryl hydrocarbon receptor (AhR) fused with sfGFP
Creators: name: Walaa Faiad
name: Abdulsamie Hanano
name: Kabakibi, Mohamed
name: Abbady, Abdul
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Alignment of the AhR(LBD) amino acids sequences. Amino acids sequence alignment of the AhR(LBD) from human (hAhR, NP_001612), mouse (mAhR, NP_038492) and rat (rAhR, NP_037281). Similarity bar above the sequences and the different secondary structures (as attributed by Geneious software) are indicated with small arrows. The TCDD binding cavity and the PAS-B domains are indicated through which small boxes under the sequence refer to the amino acids whose side chains are implicated in the structure of the cavity (light coloured for lateral and dark for internal positions), as described before [31]. (DOC 272 kb)
Computing degree-of-knowledge values for a developer's workspace
Creators: name: Ou, Jingwen
Publisher: name: University of British Columbia
Year: 2009

description: Previous research in computer science shows that software developers are typically deluged by an enormous volume of information daily. Improving the effectiveness of developers to filter this information may yield significant productivity improvements. To combat this overload, we introduce an indicator, called degree-of-knowledge (DOK), which is a real value indicating how much knowledge a developer has with a source code element. A developer’s DOK values for a source code base can be computed automatically from authorship data mined from the source revision systems and from interaction data collected as the developer works. This indicator may help reduce information overload by, for instance, filtering the source code to only show the elements for which a developer has high knowledge. We describe our implementation of an efficient framework for computing DOK values in a development environment.
Chamaecytisus purpureus Link
Creators: name: Info Flora
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Chamaecytisus
Chamaecytisus purpureus

description: Chamaecytisus purpureus (Scop.) Link
Art ISFS: 107300 Checklist: 1011770 Fabaceae Chamaecytisus Chamaecytisus hirsutus aggr. Chamaecytisus purpureus (Scop.) Link
Bestimmungsschlüssel
ZusammenfassungKEINE ANGABE
Ökologie
Lebensraum Lebensraumnach Delarze & al. 2015
KEINE ANGABE
Ökologische Zeigerwerte nach Landolt & al. (2010)
BodenfaktorenKlimafaktorenSalztoleranzFeuchtezahl F--Lichtzahl L--Salzzeichen--Reaktionszahl R--Temperaturzahl T--Nährstoffzahl N--Kontinentalitätszahl K--
Nomenklatur
Gültiger Name (Checklist 2017):Chamaecytisus purpureus(Scop.) Link
Volksname
Deutscher Name: -- Nom français: -- Nome italiano: --
Übereinstimmung mit anderen Referenzwerken
RelationNomReferenzwerkeNo=Chamaecytisus purpureus (Scop.) LinkChecklist 2017107300=Chamaecytisus purpureus (Scop.) LinkIndex synonymique 1996107300=Chamaecytisus purpureus (Scop.) LinkLandolt 19771695=Chamaecytisus purpureus (Scop.) LinkSISF/ISFS 2107300
= Taxon stimmt mit akzeptiertem Taxon überein (Checklist 2017)  Taxon enthält (neben anderen) auch das akzeptierte Taxon (Checklist 2017)
Status Indigenat: -
Liste der gefährdeten Pflanzen IUCN(nach Walter & Gillett 1997): Nein
description: Published as part of Info Flora, 2021,
DataCite: Demarrer
Creators: name: Chokri, Ben Romdhane
Publisher: name: DataCite
Year: 2024
Subjects: DataCite GAP
French
Webinar
DataCite Ambassador
DOI
PID

description: DataCite est une organisation mondiale à but non lucratif leader  qui fournit des identifiants persistants (PID) pour les résultats et les ressources de recherche. L'Ambassadeur DataCite est un programme que lancé par DataCite pour sensibiliser, favoriser la collaboration et promouvoir les meilleures pratiques au sein des  communautés locales et  régionales grâce à notre réseau de bénévoles dévoués qui s'engagent auprès de notre communauté diversifiée. Le programme d’ambassadeurs fait partie du Global Access Program (GAP) de DataCite, qui vise à améliorer l’équité, l’accès et l’adoption de l’infrastructure d’identification persistante (PID) par les communautés des pays sous-représentés, y compris les pays francophones d’Afrique.Veuillez consulter l'enregistrement de cette présentation à l'adresse suivante: https://www.youtube.com/watch?v=fkp9iuiRusY&t=1472s
Additional file 2: Table S2. of Immuno-detection of dioxins using a recombinant protein of aryl hydrocarbon receptor (AhR) fused with sfGFP
Creators: name: Walaa Faiad
name: Abdulsamie Hanano
name: Kabakibi, Mohamed
name: Abbady, Abdul
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Molecular Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Plant Biology
subject: Computational Biology

description: The different additives used for refolding the sfGFP-AhR. The basic information of the different additives used for solubilizing the sfGFP-AhR from the inclusion bodies. (DOC 95 kb)
Particle Markov chain Monte Carlo
Creators: name: Holenstein, Roman
Publisher: name: University of British Columbia
Year: 2009

description: Markov chain Monte Carlo (MCMC) and sequential Monte Carlo (SMC) methods have emerged as the two main tools to sample from high-dimensional probability distributions. Although asymptotic convergence of MCMC algorithms is ensured under weak assumptions, the performance of these latters is unreliable when the proposal distributions used to explore the space are poorly chosen and/or if highly correlated variables are updated independently. In this thesis we propose a new Monte Carlo framework in which we build efficient high-dimensional proposal distributions using SMC methods. This allows us to design effective MCMC algorithms in complex scenarios where standard strategies fail. We demonstrate these algorithms on a number of example problems, including simulated tempering, nonlinear non-Gaussian state-space model, and protein folding.
Cicer arietinum L.
Creators: name: Info Flora
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Cicer
Cicer arietinum

description: Cicer arietinum L.
Kichererbse
Art ISFS: 112700 Checklist: 1012180 Fabaceae Cicer Cicer arietinum L.
Zusammenfassung
Artbeschreibung (nach Lauber & al. 2018): 20-50 cm hoch, abstehend drüsenhaarig. Blätter unpaarig gefiedert, mit 3-8 Fiederpaaren. Teilblätter lanzettlich bis oval, gezähnt. Blüten einzeln in den Blattwinkeln, gestielt, Stiel kürzer als das Blatt. Krone weisslich bis violettpurpurn, ca. 1 cm lang. Fahne länger als Flügel und Schiffchen, dieses stumpf. Kelch trichterförmig, mit schmalen Zähnen, diese fast doppelt so lang wie die Kelchröhre. Frucht aufgeblasen, drüsig behaart, 1-2samig, 2-3 cm lang.
Blütezeit (nach Lauber & al. 2018): 6
Standort und Verbreitung in der Schweiz (nach Lauber & al. 2018): In der Südschweiz gelegentlich angebaut, selten verwildert / kollin /
Verbreitung global (nach Lauber & al. 2018): Ostmediterran
Ökologische Zeigerwerte (nach Landolt & al. 2010) 232-353.t.2n=14,16,32
Ökologie
Lebensform Therophyt
Lebensraum Lebensraumnach Delarze & al. 2015
KEINE ANGABE
Ökologische Zeigerwerte nach Landolt & al. (2010)
BodenfaktorenKlimafaktorenSalztoleranzFeuchtezahl Fmässig trockenLichtzahl LhalbschattigSalzzeichen--Reaktionszahl Rschwach sauer bis neutral (pH 4.5-7.5)Temperaturzahl Tsehr warm-kollin (nur an wärmsten Stellen, Hauptverbreitung in Südeuropa)Nährstoffzahl NnährstoffarmKontinentalitätszahl Ksubozeanisch bis subkontinental (mittlere Luftfeuchtigkeit, mässige Temperaturschwankungen und mässig tiefe Wintertemperaturen)
Nomenklatur
Gültiger Name (Checklist 2017):Cicer arietinumL.
Volksname Deutscher Name: Kichererbse Nom français: Pois chiche, Cicer tête de bélier Nome italiano: Cece
Übereinstimmung mit anderen Referenzwerken
RelationNomReferenzwerkeNo=Cicer arietinum L.Checklist 2017112700=Cicer arietinum L.Flora Helvetica 20011225=Cicer arietinum L.Flora Helvetica 2012558=Cicer arietinum L.Flora Helvetica 2018558=Cicer arietinum L.Index synonymique 1996112700=Cicer arietinum L.Landolt 19771819=Cicer arietinum L.SISF/ISFS 2112700
= Taxon stimmt mit akzeptiertem Taxon überein (Checklist 2017)  Taxon enthält (neben anderen) auch das akzeptierte Taxon (Checklist 2017)
Status Indigenat: Neophyt: nach der Entdeckung von Amerika in der Region aufgetreten (nach 1500)
Liste der gefährdeten Pflanzen IUCN(nach Walter & Gillett 1997): Nein
description: Published as part of Info Flora, 2021,
Roadmap proposal for a European Microbiome-Dedicated Surveillance Network
Creators: name: Dore, Joel
Publisher: name: Zenodo
Year: 2024

description: In this deliverable D7.4, we propose a roadmap for the creation of a European Microbiome-Dedicated Surveillance Network (EMDSN) in charge of monitoring the evolution of microbiome-based standards and microbiome-based products. We previously described in a milestone (IHMCSA_WP7_MS28) why such a network is needed for the microbiome field in Europe. To this end, we provided a list of needs, barriers and challenges specific to microbiome research that we identified during the Human Microbiome Action (IHMCSA) project (emerging from the work of WP1 to WP6 and presented in Table 1 of the current deliverable). Then, we established a first draft of how we could imagine the organisation of this EMDSN with the different tasks that this network can handle, coordinate or monitor in the near future. To do so, we provided a list of different stakeholders with complementary expertise that could (or should) be involved in this EMDSN. In this D7.4. deliverable, we complete the MS28 report by several actions: We propose a clear organisation and vision for the creation of EMDSN that will be an important European network subdivided in three main areas of expertise: the microbiome in public health and epidemiology, the monitoring of microbiome analytical methods and the microbiome outreach & international collaboration. We establish a final proposal for the list of different entities that can be part of the network. Their tasks and responsibilities are detailed in the table 2. We evaluate the feasibility for the creation of such a monitoring network, pinpointing the lacking resources at the present time for launching the EMDSN (human, financial, equipment..) We summarize in the last part some examples of collaborative efforts engaged during the IHMCSA project, that could be strongly supported and continued by the expertise from EMDSN, and really help the microbiome field in Europe.
Additional file 1 of Analysing multiple types of molecular profiles simultaneously: connecting the needles in the haystack
Creators: name: RenĂŠe X. Menezes
name: Mohammadi, Leila
name: Goeman, Jelle J.
name: Boer, Judith M.
Publisher: name: Figshare
Year: 2016
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Computational Biology

description: Details in development of the test statistic. This.pdf file includes details on how the test statistic is obtained, including a general functional form for the test statistic for any number M of covariates set and the expression obtained for M=3. (PDF 221 kb)
Additional file 1: Table S1. of Immuno-detection of dioxins using a recombinant protein of aryl hydrocarbon receptor (AhR) fused with sfGFP
Creators: name: Walaa Faiad
name: Abdulsamie Hanano
name: Kabakibi, Mohamed
name: Abbady, Abdul
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: The primers used for the amplification and cloning of the AhR. The different parameters (application, name, length and sequence) of the primers used for AhR gene amplification and cloning into the pRSET-sfGFP plasmid. (DOC 79 kb)
Additional file 3 of Integrative analysis of genetic data sets reveals a shared innate immune component in autism spectrum disorder and its co-morbidities
Creators: name: Sumaiya Nazeen
name: Palmer, Nathan P.
name: Berger, Bonnie
name: Kohane, Isaac S.
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Supplementary figures. This PDF file contains supplementary Figures S1 through S5 and their captions. (PDF 8110 kb)
Additional file 4: Figure S2. of Immuno-detection of dioxins using a recombinant protein of aryl hydrocarbon receptor (AhR) fused with sfGFP
Creators: name: Walaa Faiad
name: Abdulsamie Hanano
name: Kabakibi, Mohamed
name: Abbady, Abdul
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: The structure of the plasmid pRSET-sfGFP-AhR. Map of the plasmid construct pRSET-sfGFP-AhR, in which the inserted AhR (LBD) is indicated. The most important elements of the plasmid are shown, including the T7 promoter, N-terminal 6Ă His tag, two restriction sites (BamHI/EcoRI) used for insert ligation, ampicillin resistance gene (Amp), f1/PUC origin of replication and the sfGFP gene. (DOC 266 kb)
Additional file 2 of Analysing multiple types of molecular profiles simultaneously: connecting the needles in the haystack
Creators: name: RenĂŠe X. Menezes
name: Mohammadi, Leila
name: Goeman, Jelle J.
name: Boer, Judith M.
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology

description: Supplementary tables and figures. This.pdf file contains details about the simulation study setup, as well as all supplementary figures and tables. (PDF 3,401 kb)
Additional file 1 of Integrative analysis of genetic data sets reveals a shared innate immune component in autism spectrum disorder and its co-morbidities
Creators: name: Sumaiya Nazeen
name: Palmer, Nathan P.
name: Berger, Bonnie
name: Kohane, Isaac S.
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Marine Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Supplementary tables. This PDF file contains supplementary Tables S1 through S4. (PDF 218 kb)
Alopiidae
Creators: name: Moore, Alec B. M.
name: Ward, Robert D.
name: Peirce, Richard
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Elasmobranchii
Lamniformes
Alopiidae

description: Alopiidae (Thresher sharks)
No confirmed Gulf records. Goubanov & Shleib (1980) reported thresher shark Alopias vulpinus (Bonnaterre, 1788) as “very seldom seen in the Gulf, only in its southern areas”, although Randall (1996) regarded this as doubtful. Bigeye thresher A. superciliosus (Lowe, 1841) was regarded by Compagno et al. (2005) as possibly occurring in the Gulf, and both this species and the pelagic thresher A. pelagicus Nakamura, 1935 are known from Oman (Henderson et al. 2007).
description: Published as part of Moore, Alec B. M., Ward, Robert D. & Peirce, Richard, 2012, Sharks of the Persian (Arabian) Gulf: a first annotated checklist (Chondrichthyes: Elasmobranchii), pp. 1-16 in Zootaxa 3167 on page 12, DOI: 10.5281/zenodo.279779
Data from: Effect of food restriction on survival and reproduction of a termite
Creators: name: Lin, Silu
name: Pen, Ido
name: Korb, Judith
Publisher: name: Zenodo
Year: 2024
Subjects: fitness
survival
reproduction
food restriction
Colony
Termites

description: Food availability affects the trade-off between maintenance and reproduction in a wide range of organisms, but its effects on social insects remain poorly understood. In social insects, the maintenance-reproduction trade-off seems to be absent in individuals but may appear at the colony level, although this is rarely investigated. In this study, we restricted food availability in a termite species to test how it affects survival and reproduction, both at the individual and colony level. Using Bayesian multivariate response models, we found very minor effects of food restriction on the survival of queens, individual workers, or on the colonies. In contrast, queen fecundity was significantly reduced while colony-level fecundity (i.e., the number of dispersing alates, future reproductives) increased under food restriction as workers gave up cooperation within the colony and became alates that dispersed. Our study shows that life history trade-offs can be mitigated by individuals' social behaviours in social organisms.
description: Data file (CSV) and R script.

 
Funding provided by: Deutsche ForschungsgemeinschaftROR ID: https://ror.org/018mejw64Award Number: KO1895/23-1
Funding provided by: Deutsche ForschungsgemeinschaftROR ID: https://ror.org/018mejw64Award Number: KO1895/25-1
description: C. secundus colonies were collected from dead Ceriops tagal trees in Darwin, Northern Territory, Australia (12°30'S 131°00'E) and kept in Pinus radiata wood blocks under lab conditions in Germany (28 °C, 70% relative humidity and a 12 h day/night cycle). Food availability was manipulated by adjusting the size of wood blocks. C. secundus senses a wood size of 1 termite per 2.5 cm³ as food shortage, while 1 termite per 10.0 cm³ reflects abundant food conditions. We set up 14 low-food colonies (1 termite: 2.5 cm³ of wood) and 21 control colonies (1 termite: 10.0 cm³ of wood) for this experiment. The experiment lasted for 18 months. In the end, we obtained fitness data for 34 colonies. We applied Bayesian multivariate response models to estimate the effect of food restriction on the survival and reproduction of individuals and colonies. R script can be found in the same data repository.
The second eigenvalue and random walks in random regular graphs with increasing girth
Creators: name: Izsak, Alexander
Publisher: name: University of British Columbia
Year: 2009

description: The goal of this thesis is to upper bound the expected value of the second largest eigenvalue in magnitude of random regular graphs with a given minimum girth. Having a small upper bound implies such random graphs are likely to be expanders and thus have several combinatorial properties useful in various fields of computer science. The best possible upper bound asymptotically on the second eigenvalue has already been proven for random regular graphs without conditions on the girth. Finding this upper bound though required long and complicated analysis due to tangles, which are certain small subgraphs that contain cycles. This thesis thus hypothesizes that specifying a minimum girth large enough will prevent tangles from occurring in random graphs and thus proving an optimal upper bound on the second eigenvalue can avoid the difficult analysis required in order to handle tangles. To find such an upper bound on random regular graphs with specified minimum girth we consider the probability that a random walk in such a random graph returns to the first vertex of the walk in the k-th step of the walk. We prove for 2-regular graphs that the random walk is more likely to visit any given vertex not in the walk than the starting vertex of the walk on the k-th step, and bound how much more likely this event is. We also analyze the d-regular case and we believe our findings will lead to a similar result in this case.
Additional file 1: of A lack of peptide binding and decreased thermostability suggests that the CASKIN2 scaffolding protein SH3 domain may be vestigial
Creators: name: Kwan, Jamie
name: Donaldson, Logan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Application of phage display to identify a potential ligand for the CASKIN2 SH3 domain. (PDF 86Â kb)
MPEC 2024-J18 : DAILY ORBIT UPDATE (2024 May 2)
Creators: name: Minor Planet Center Staff
Publisher: name: The Minor Planet Center
Year: 2024
Subjects: subject: Small Solar System bodies
valueUri: http://astrothesaurus.org/uat/1469

description: The Minor Planet Electronic Circulars contain information on unusual minor planets, routine data on comets and natural satellites, and occasional editorial announcements.  They are published on behalf of Division F of the International Astronomical Union by the Minor Planet Center, Smithsonian Astrophysical Observatory, Cambridge, MA 02138, U.S.A.
Lamnidae
Creators: name: Moore, Alec B. M.
name: Ward, Robert D.
name: Peirce, Richard
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Elasmobranchii
Lamniformes
Lamnidae

description: Lamnidae (Mackerel sharks)
No confirmed Gulf records. A Kuwait record (Khalaf 1987) of the great white shark Carcharodon carcharias (Linnaeus, 1758) was a misidentification of Carcharias taurus (Moore et al. 2007). Tourenq et al. (2008) note an unsubstantiated Carcharodon carcharias record from the United Arab Emirates and Musandam area, and a skin specimen registered as C. carcharias from nearby Oman (BMNH 1891.2.9.41) has apparently been lost (Patrick Campbell, BMNH, pers. comm.). Randall (1986) noted the shortfin mako Isurus oxyrinchus Rafinesque, 1810 as not yet reported from the Gulf and our data support this.
description: Published as part of Moore, Alec B. M., Ward, Robert D. & Peirce, Richard, 2012, Sharks of the Persian (Arabian) Gulf: a first annotated checklist (Chondrichthyes: Elasmobranchii), pp. 1-16 in Zootaxa 3167 on page 12, DOI: 10.5281/zenodo.279779
Colutea arborescens subsp. arborescens
Creators: name: Info Flora
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Colutea
Colutea arborescens
Colutea arborescens l. subsp. arborescens

description: Colutea arborescens L. subsp. arborescens
Unterart ISFS: 118130 Checklist: 1012890 Fabaceae Colutea Colutea arborescens L. Colutea arborescens L. subsp. arborescens
ZusammenfassungKEINE ANGABE
Status Nationale Priorität: --
Internationale Verantwortung: --
Ökologie
Lebensraum Lebensraumnach Delarze & al. 2015
KEINE ANGABE
Ökologische Zeigerwerte nach Landolt & al. (2010)
BodenfaktorenKlimafaktorenSalztoleranzFeuchtezahl F--Lichtzahl L--Salzzeichen--Reaktionszahl R--Temperaturzahl T--Nährstoffzahl N--Kontinentalitätszahl K--
Nomenklatur
Gültiger Name (Checklist 2017):Colutea arborescensL. subsp.arborescens
Volksname
Deutscher Name: -- Nom français: -- Nome italiano: --
Übereinstimmung mit anderen Referenzwerken
RelationNomReferenzwerkeNo=Colutea arborescens L. subsp. arborescensChecklist 2017118130
= Taxon stimmt mit akzeptiertem Taxon überein (Checklist 2017)  Taxon enthält (neben anderen) auch das akzeptierte Taxon (Checklist 2017)
Kommentare aus der Checklist 2017 Neue Unterart: Die Art wurde bisher (SISF-2) nicht in Unterarten aufgeteilt oder die Unterteilung wurde bisher nicht akzeptiert. Checklist
Status Indigenat: Indigen
Liste der gefährdeten Pflanzen IUCN(nach Walter & Gillett 1997): Nein Status Rote Liste national
KEINE ANGABE
Status nationale Priorität /Verantwortung
Nationale Priorität--Massnahmenbedarf--Internationale Verantwortung--Überwachung Bestände--
Schutzstatus
Kein internationaler, nationaler oder kantonaler Schutz
description: Published as part of Info Flora, 2021,
Paceline : toward high-bandwidth interactive continous media applications over TCP
Creators: name: Tayarani Najaran, Mahdi
Publisher: name: University of British Columbia
Year: 2009

description: Multimedia applications are known to have low end-to-end latency requirements for interactivity, suggesting UDP to be a suitable transport protocol. Traditionally, the bandwidth requirements were set to be well below the network capacity. Modern applications could evolve if more bandwidth were available without giving up interactivity. However, the lack of a suitable transport providing such high bandwidth with low latency has prevented the existence of the next generation of multimedia applications. A transport built on top of UDP can no longer traverse the network without being hit by major packet drops or severely damaging other traffic. TCP, having built-in congestion control, is safe to use for high bandwidth requirements, but has been associated with unexpected high latencies. In this thesis, we go against conventional wisdom and design Paceline, a transport layer on top of TCP to support high-bandwidth low-latency applications. Paceline improves latency through application level rate control. It also detects when TCP connections exponentially back-off and automatically replaces them with standby connections. Through evaluation we show Paceline improves TCP's shortcomings in terms of end-to-end latency in extremely congested networks, without sacrificing TCP's effectiveness in utilization or bandwidth sharing. We design two different applications on top of Paceline for streaming live video. We present a preliminary evaluation of the application's performance when using Paceline in congested networks and show significant improvements compared to TCP.
Additional file 1: of Awareness and implementation of nine World Health Organizationâ  s patient safety solutions among three groups of healthcare workers in Oman
Creators: name: Al-Mandhari, Ahmed
name: Al-Zakwani, Ibrahim
name: Al-Adawi, Samir
name: Al-Barwani, Samra
name: Lakshmanan Jeyaseelan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Biotechnology
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: Awareness and practice of nine World Health Organizationâ  s patient safety solutions. (DOCX 34 kb)
Triakidae Houndsharks
Creators: name: Moore, Alec B. M.
name: Ward, Robert D.
name: Peirce, Richard
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Elasmobranchii
Carcharhiniformes
Triakidae

description: Triakidae (Houndsharks)
A record of the blacktip tope Hypogaleus hyugaensis (Miyosi, 1939) in the Gulf was first reported in Compagno (1984), apparently inserted without this author’s knowledge and on an uncertain basis (LJV Compagno, pers. comm.). Randall (1986, Fig. 39) presented a photograph of the then undescribed Paragaleus randalli from Bahrain as H. hyugaensis. Currently H. hyugaensis is known from southern and eastern Africa, Australia, Taiwan and Japan, and seems to be a deeper-water species than P. randalli (LJV Compagno, pers. comm.). As yet there is no evidence for this species in the Gulf.
description: Published as part of Moore, Alec B. M., Ward, Robert D. & Peirce, Richard, 2012, Sharks of the Persian (Arabian) Gulf: a first annotated checklist (Chondrichthyes: Elasmobranchii), pp. 1-16 in Zootaxa 3167 on page 12, DOI: 10.5281/zenodo.279779
Carcharhinidae
Creators: name: Moore, Alec B. M.
name: Ward, Robert D.
name: Peirce, Richard
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Elasmobranchii
Carcharhiniformes
Carcharhinidae

description: Carcharhinidae (Whaler or requiem sharks)
The silvertip shark Carcharhinus albimarginatus (Rüppell, 1837) was recorded by Goubanov & Shleib (1980; subsequently noted in Bishop, 2003) as seldom encountered in the southern Gulf although they did not present evidence; Randall (1996) considered this record doubtful. This species is generally associated with shelf waters, offshore islands, reefs, and banks, and near drop-offs, with the nearest confirmed records from the Red Sea and the Maldives (Compagno et al. 2005); it was not recorded in Omani surveys (Henderson et al. 2007; Henderson & Reeve, 2011); it is considered unlikely to be present in the Gulf.
A single specimen of a shark morphologically similar to, but clearly distinct from, C. dussumieri, was photographed by the lead author in Kuwait in April 2008 but not retained. Whole specimens are needed to resolve the identity of this species (W. White, CSIRO Marine Research, pers. comm.).
The silky shark Carcharhinus falciformis (Müller & Henle, 1839) is abundant in Omani waters (Henderson et al. 2007) and considered to be possibly present in the Gulf (Compagno et al. 2005), although no records are known to the current authors; this species may be more likely to occur in the deeper waters of the northeastern Gulf.
Isolated records of the spadenose shark Scoliodon laticaudus (Müller & Henle, 1838) from fish community studies in Kuwait Bay (Wright et al. 1990, as S. laticaudatus; Wright et al. 1996) require confirmation.
The circumglobal sandbar shark Carcharhinus plumbeus (Nardo, 1827) has been reported (e.g. Goubanov & Shleib, 1980; Herdson 1981; Krupp & Almarri 1996) and photographs of a specimen seen by the authors are more than likely to have originated from the Gulf, although unequivocal evidence is required.
Compagno (1984b) raised the possibility that the critically endangered Ganges shark Glyphis gangeticus (Müller & Henle, 1839) may occur in the Gulf, and although this author did not pursue the idea (e.g. Compagno 1984a; Compagno et al. 2005) it was considered to be plausible given environmental changes over recent geological history (Moore 2011). Mahdi (1962) noted two separate species of freshwater shark occurring in the Tigris River as far upstream as Baghdad, although these may simply represent misidentification of C. leucas. Nonetheless the undersampled (and highly threatened) Tigris-Euphrates-Karun system remains intriguing.
Randall (1996) noted that the whitetip reef shark Triaenodon obesus (Rüppell, 1837) has not been recorded from the Gulf and our data support this.
description: Published as part of Moore, Alec B. M., Ward, Robert D. & Peirce, Richard, 2012, Sharks of the Persian (Arabian) Gulf: a first annotated checklist (Chondrichthyes: Elasmobranchii), pp. 1-16 in Zootaxa 3167 on pages 12-13, DOI: 10.5281/zenodo.279779
Colutea arborescens subsp. gallica Browicz
Creators: name: Info Flora
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Colutea
Colutea arborescens
Colutea arborescens subsp. gallica browicz

description: Colutea arborescens subsp. gallica Browicz
Unterart ISFS: 118160 Checklist: 1012900 Fabaceae Colutea Colutea arborescens L. Colutea arborescens subsp. gallica Browicz
ZusammenfassungKEINE ANGABE
Status Nationale Priorität: --
Internationale Verantwortung: --
Ökologie
Lebensraum Lebensraumnach Delarze & al. 2015
KEINE ANGABE
Ökologische Zeigerwerte nach Landolt & al. (2010)
BodenfaktorenKlimafaktorenSalztoleranzFeuchtezahl F--Lichtzahl L--Salzzeichen--Reaktionszahl R--Temperaturzahl T--Nährstoffzahl N--Kontinentalitätszahl K--
Nomenklatur
Gültiger Name (Checklist 2017):Colutea arborescenssubsp.gallicaBrowicz
Volksname
Deutscher Name: -- Nom français: -- Nome italiano: --
Übereinstimmung mit anderen Referenzwerken
RelationNomReferenzwerkeNo=Colutea arborescens subsp. gallica BrowiczChecklist 2017118160
= Taxon stimmt mit akzeptiertem Taxon überein (Checklist 2017)  Taxon enthält (neben anderen) auch das akzeptierte Taxon (Checklist 2017)
Kommentare aus der Checklist 2017 Neue Unterart: Die Art wurde bisher (SISF-2) nicht in Unterarten aufgeteilt oder die Unterteilung wurde bisher nicht akzeptiert. Checklist
Status Indigenat: Indigen
Liste der gefährdeten Pflanzen IUCN(nach Walter & Gillett 1997): Nein Status Rote Liste national
KEINE ANGABE
Status nationale Priorität /Verantwortung
Nationale Priorität--Massnahmenbedarf--Internationale Verantwortung--Überwachung Bestände--
Schutzstatus
Kein internationaler, nationaler oder kantonaler Schutz
description: Published as part of Info Flora, 2021,