cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Phase diagram of 2D array of mesoscopic granules
Creators: name: Belousov, A. I.
name: Verzakov, S. A.
name: Lozovik, Yu. E.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: A lattice boson model is used to study ordering phenomena in regular 2D array of superconductive mesoscopic granules, Josephson junctions or pores filled with a superfluid helium. Phase diagram of the system, when quantum fluctuations of both the phase and local superfluid density are essential, is analyzed both analytically and by quantum Monte Carlo technique. For the system of strongly interacting bosons it is found that as the boson density $n_0$ is increased the boundary of ordered superconducting state shifts to {\it lower temperatures} and at $n_0 > 8$ approaches its limiting position corresponding to negligible relative fluctuations of moduli of the order parameter (as in an array of "macroscopic" granules). In the region of weak quantum fluctuations of phases mesoscopic phenomena manifest themselves up to $n_0 \sim 10$. The mean field theory and functional integral $1/n_0$ - expansion results are shown to agree with that of quantum Monte Carlo calculations of the boson Hubbard model and its quasiclassical limit, the quantum XY model.
description: 7 pages, 5 Postscript figures
On global $L^q$ estimates for systems with $p$-growth in rough domains
Creators: name: Bulíček, M.
name: Byun, S.
name: Kaplický, P.
name: Oh, J.
name: Schwarzacher, S.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Analysis of PDEs (math.AP)
subject: FOS: Mathematics
subject: 35K51, 35K55, 35B65, 35A01

description: We study regularity results for nonlinear parabolic systems of $p$-Laplacian type with inhomogeneous boundary and initial data, with $p\in(\frac{2n}{n+2},\infty)$. We show bounds on the gradient of solutions in the Lebesgue-spaces with arbitrary large integrability exponents and natural dependences on the right hand side and the boundary data. In particular, we provide a new proof of the global non-linear Calderón-Zygmund theory for such systems. Our method makes use of direct estimates on the solution minus its boundary values and hence is considerably shorter than the available higher integrability results. Technically interesting is the fact that our parabolic estimates have no scaling deficit with respect to the leading order term. Moreover, in the singular case, $p\in(\frac{2n}{n+2},2]$, any scaling deficit can be omitted.
Effect of γ-irradiation on superconducting transition temperature and resistive transition in polycrystalline YBa_{2}Cu_{3}O_(7-δ)
Creators: name: Belevtsev, B. I.
name: Volchok, I. V.
name: Dalakova, N. V.
name: Dotsenko, V. I.
name: Ivanchenko, L. G.
name: Kuznichenko, A. V.
name: Logvinov, I. I.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: A bulk polycrystalline sample of YBa_(2)Cu_(3)O_(7-δ) (δ\approx 0.1) has been irradiated by γ-rays with ^{60}Co source. Non-monotonic behavior of T_{c} with increasing irradiation dose Φ(up to 220 MR) is observed: T_{c} decreases at low doses (Φ< 50 MR) from initial value (\approx 93 K) by about 2 K and then rises, forming a minimum. At higher doses (Φ> 120 MR) T_{c} goes down again. The temperature width of resistive transition increases rather sharply with dose below 75 MR and drops somewhat at higher dose. The results observed are discussed, taking into account the granular structure of sample studied and the influence of γ-rays on intergrain Josephson coupling.
description: 2 pages, to appear in the proceeding of M2S-HTSC-VI conference, Houston
Long range correlations in the non-equilibrium quantum relaxation of a spin chain
Creators: name: Igloi, F.
name: Rieger, H.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We consider the non-stationary quantum relaxation of the Ising spin chain in a transverse field of strength h. Starting from a homogeneously magnetized initial state the system approaches a stationary state by a process possessing quasi long range correlations in time and space, independent of the value of $h$. In particular the system exhibits aging (or lack of time translational invariance on intermediate time scales) although no indications of coarsening are present.
description: 4 pages RevTeX, 2 eps-figures included
MOESM3 of Highly sensitive MLH1 methylation analysis in blood identifies a cancer patient with low-level mosaic MLH1 epimutation
Creators: name: Dámaso, Estela
name: Canet-Hermida, Júlia
name: Vargas-Parra, Gardenia
name: Velasco, Àngela
name: Marín, Fátima
name: Darder, Esther
name: Valle, Jesús
name: Fernández, Anna
name: Izquierdo, Àngel
name: Mateu, Gemma
name: Oliveras, Glòria
name: Escribano, Carmen
name: Piñol, Virgínia
name: Uchima, Hugo-Ikuo
name: Soto, José
name: Hitchins, Megan
name: Farrés, Ramon
name: Lázaro, Conxi
name: Queralt, Bernat
name: Brunet, Joan
name: Capellá, Gabriel
name: Pineda, Marta
Publisher: name: figshare
Year: 2019
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology

description: Additional file 3. Supplementary Methods.
Dateiformatidentifizierung - Was, warum, wie, womit, …
Creators: name: Lindlar, Micky
Publisher: name: Zenodo
Year: 2021
Subjects: digital preservation
digital curation
file format identification

description: Der Vortrag gibt eine kurze Einführung in Dateiformatidentifizierung im Rahmen der digitalen Langzeitarchivierung. Es wird dargestellt was Dateiformatidentifizierung ist und welche unterschiedliche Möglichkeiten zur Identifizierung existieren. Neben einer exemplarischen Vorstellung von Softwaretools zur Identifizierung gibt der Vortrag einige kurze Beispiele für Probleme, die im Rahmen des Prozesses auftreten können.
Electrowetting of a nano-suspension on a soft solid
Creators: name: Kumar, Sumit
name: Kumar, Pawan
name: DasGupta, Sunando
name: Chakraborty, Suman
Publisher: name: arXiv
Year: 2018
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: The wetting of solid surfaces can be manoeuvred by altering the energy balance at the interfacial region. While electric field acts favourably to spread a droplet on a rigid surface, this tendency may be significantly suppressed over soft surfaces, considering a part of the interfacial energy being utilized to deform the solid elastically by capillary forces. Here, we bring out a unique mechanism by virtue of which addition of nano-particles to the droplet brings in a favourable recovery of the electro-spreading characteristics of a soft surface, by realizing an alteration in the effective dielectric constant of the interfacial region. Our experiments further demonstrate that this mechanism ceases to be operative beyond a threshold volume fraction of the particle suspension, due to inevitable contact line pinning. We also develop a theory to explain our experimental observations. Our findings provide a non-contact mechanism for meniscus spreading and droplet control, bearing far-reaching implications in biology and engineering.
description: 2 figures, 13 pages
Additional file 1: of High serum uric acid level is associated with greater handgrip strength in the aged population
Creators: name: Lee, Jennifer
name: Hong, Yeon
name: Park, Sung-Hwan
name: Kang, Kwi
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: Table S1. Correlation between serum uric acid and handgrip strength stratified by age group. Table S2. Multivariate linear regression analysis for handgrip strength according to the group of age (Nâ =â 5431). (DOCX 22 kb)
title: Wave attenuation by vegetation applied on dike design
Creators: name: Remmers, Joost
Publisher: name: Student Undergraduate Research E-journal!
Year: 2016

description: Wave attenuation by vegetation on the foreland can reduce hydraulic loads on dikes. Literature study showed the reliability issues within several methods. The currently most popular method is based largely on an empirical constant, called the bulk drag coefficient. Several datasets were analyzed to find a relation for this coefficient. With the use of this data a quantitative method and tool was developed for computations of this effect. The impact of the vegetation on the design crest height and dike cover was significant. However, current methods for the computation of this effect are still to unreliable for application in practice.
description: Student Undergraduate Research E-journal!, Vol 2 (2016): Student Research Conference 2016
Coordinated UV and X-ray spectroscopic observations of the O-type giant xi Per: the connection between X-rays and large-scale wind structure
Creators: name: Massa, Derck
name: Oskinova, Lida
name: Prinja, Raman
name: Ignace, Richard
Publisher: name: arXiv
Year: 2019
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We present new, contemporaneous HST STIS and XMM observations of the O7 III(n)((f)) star xi Per. We supplement the new data with archival IUE spectra, to analyze the variability of the wind lines and X-ray flux of xi Pper. The variable wind of this star is known to have a 2.086 day periodicity. We use a simple, heuristic spot model which fits the low velocity (near surface) IUE wind line variability very well, to demonstrate that the low velocity absorption in the new STIS spectra of N IV 1718 and Si IV 1402 vary with the same 2.086 day period. It is remarkable that the period and amplitude of the STIS data agree with those of the IUE spectra obtained 22 years earlier. We also show that the time variability of the new XMM fluxes are also consistent with the 2.086 day period. Thus, our new, multi-wavelength coordinated observations demonstrate that the mechanism which causes the UV wind line variability is also responsible for a significant fraction of the X-rays in single O stars. The sequence of events for the multi-wavelength light curve minima is: Si IV 1402, N IV 1718, and X-ray flux, each separated by a phase of about 0.06 relative to the 2.086 day period. Analysis of the X-ray fluxes shows that they become softer as they weaken. This is contrary to expectations if the variability is caused by periodic excess absorption. Further, the high resolution X-ray spectra suggest that the individual emission lines at maximum are more strongly blue shifted. If we interpret the low velocity wind line light curves in terms of our model, it implies that there are two bright regions, i.e., regions with less absorption, separated by 180 deg, on the surface of the star. We note that the presence and persistent of two spots separated by 180 deg suggests that a weak dipole magnetic field is responsible for the variability of the UV wind line absorption and X-ray flux in xi Per.
description: 23 pages, 14 figures
Multiple Histogram Method for Quantum Monte Carlo
Creators: name: Martin, Christopher L.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: An extension to the multiple-histogram method (sometimes referred to as the Ferrenberg-Swendsen method) for use in quantum Monte Carlo simulations is presented. This method is shown to work well for the 2D repulsive Hubbard model, allowing measurements to be taken over a continuous region of parameters. The method also reduces the error bars over the range of parameter values due the overlapping of multiple histograms. A continuous sweep of parameters and reduced error bars allow one to make more difficult measurements, such as Maxwell constructions used to study phase separation. Possibilities also exist for this method to be used for other quantum systems.
description: 4 pages, 5 figures, RevTeX, submitted to Phys. Rev. B Rapid Comm
Five-dimensional scale-dependent black holes with constant curvature and Solv horizons
Creators: name: Contreras, E.
name: Rincón, Á.
name: Bargueño, P.
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In this work, we investigate five-dimensional scale-dependent black hole solutions by modelling their event horizon with some of the eight Thurston three-dimensional geometries. Specifically, we construct constant curvature scale-dependent black holes and also the more exotic scale-dependent Solv black hole. These new solutions are obtained by promoting both the gravitational and the cosmological couplings to $r$-dependent functions, in light of a particular description of the effective action inspired by the high energy philosophy. Interestingly, the so-called running parameter, together with the topology of the event horizon, control the asymptotic structure of the solutions found. Finally, differences in both the entropy and the temperature between the classical and the scale-dependent Solv black hole are briefly commented.
description: 9 pages. Some comments added
Signatures of copy number alterations in human cancer.
Creators: name: Steele, Christopher D
name: Abbasi, Ammal
name: Islam, SM Ashiqul
name: Bowes, Amy L
name: Khandekar, Azhar
name: Haase, Kerstin
name: Hames-Fathi, Shadi
name: Ajayi, Dolapo
name: Verfaillie, Annelien
name: Dhami, Pawan
name: McLatchie, Alex
name: Lechner, Matt
name: Light, Nicholas
name: Shlien, Adam
name: Malkin, David
name: Feber, Andrew
name: Proszek, Paula
name: Lesluyes, Tom
name: Mertens, Fredrik
name: Flanagan, Adrienne M
name: Tarabichi, Maxime
name: Van Loo, Peter
name: Alexandrov, Ludmil B
name: Pillay, Nischalan
Publisher: name: The Francis Crick Institute
Year: 2022
Subjects: classificationCode: Tumour Biology
subject: Tumour Biology
classificationCode: Genetics & Genomics
subject: Genetics & Genomics
classificationCode: Human Biology & Physiology
subject: Human Biology & Physiology
classificationCode: Ecology,Evolution & Ethology
subject: Ecology,Evolution & Ethology
classificationCode: Computational & Systems Biology
subject: Computational & Systems Biology

description: Gains and losses of DNA are prevalent in cancer and emerge as a consequence of inter-related processes of replication stress, mitotic errors, spindle multipolarity and breakage-fusion-bridge cycles, among others, which may lead to chromosomal instability and aneuploidy1,2. These copy number alterations contribute to cancer initiation, progression and therapeutic resistance3-5. Here we present a conceptual framework to examine the patterns of copy number alterations in human cancer that is widely applicable to diverse data types, including whole-genome sequencing, whole-exome sequencing, reduced representation bisulfite sequencing, single-cell DNA sequencing and SNP6 microarray data. Deploying this framework to 9,873 cancers representing 33 human cancer types from The Cancer Genome Atlas6 revealed a set of 21 copy number signatures that explain the copy number patterns of 97% of samples. Seventeen copy number signatures were attributed to biological phenomena of whole-genome doubling, aneuploidy, loss of heterozygosity, homologous recombination deficiency, chromothripsis and haploidization. The aetiologies of four copy number signatures remain unexplained. Some cancer types harbour amplicon signatures associated with extrachromosomal DNA, disease-specific survival and proto-oncogene gains such as MDM2. In contrast to base-scale mutational signatures, no copy number signature was associated with many known exogenous cancer risk factors. Our results synthesize the global landscape of copy number alterations in human cancer by revealing a diversity of mutational processes that give rise to these alterations.
Mining useful Macro-actions in Planning
Creators: name: Castellanos-Paez, Sandra
name: Pellier, Damien
name: Fiorino, Humbert
name: Pesty, Sylvie
Publisher: name: arXiv
Year: 2018
Subjects: subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: Planning has achieved significant progress in recent years. Among the various approaches to scale up plan synthesis, the use of macro-actions has been widely explored. As a first stage towards the development of a solution to learn on-line macro-actions, we propose an algorithm to identify useful macro-actions based on data mining techniques. The integration in the planning search of these learned macro-actions shows significant improvements over six classical planning benchmarks.
description: International Conference on Artificial Intelligence and Pattern Recognition, 2016
Light Higgs Production at a Photon Collider
Creators: name: Jikia, G.
name: Soldner-Rembold, S.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: We present a preliminary study of the production of a light Higgs boson with a mass between 120 and 160 GeV in photon-photon collisions at a Compton collider. The event generator for the backgrounds to a Higgs signal due to bbbar and ccbar heavy quark pair production in polarized Gamma-Gamma collisions is based on a complete next-to-leading order (NLO) perturbative QCD calculation. For J_z=0 the large double-logarithmic corrections up to four loops are also included. It is shown that the two-photon width of the Higgs boson can be measured with high statistical accuracy of about 2-10% for integrated Gamma-Gamma luminosity in the hard part of the spectrum of 43 fb-1. From this result the total Higgs boson width can be derived in a model independent way.
description: 12 pages, submitted to International Workshop on High Energy Photon Colliders, June 14 - 17, 2000, DESY Hamburg, Germany
Additional file 1: of Seasonality and the effects of weather on Campylobacter infections
Creators: name: Abdelmajid Djennad
name: Iacono, Giovanni Lo
name: Sarran, Christophe
name: Lane, Christopher
name: Elson, Richard
name: Hรถser, Christoph
name: Lake, Iain
name: Colรณn-Gonzรกlez, Felipe
name: Kovats, Sari
name: Semenza, Jan
name: Bailey, Trevor
name: Kessel, Anthony
name: Fleming, Lora
name: Nichols, Gordon
Publisher: name: figshare
Year: 2019
Subjects: subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified

description: Figure S5 shows: a) Average weekly reported Campylobacter cases averaged over 20 years (from 1989 to 2009). All time series were square root transformed and then normalised to sum to unity. c) wavelet power spectrum of the transformed time-series of Campylobacter. Low values of the power spectrum are shown in dark blue, and high values in dark red. The black lines show the maxima of the undulations of the wavelet power spectrum. The light white shaded areas identify the region subjected to errors arising from dealing with a finite-length time series (edge effect). e) global average wavelet power spectrum, the black dots show the 5% significant levels computed based on 100 bootstrapped series g) original and reconstructed time-series according to all harmonics and the selected first 3 harmonics only. b), d), f) h) As in figures a), c) e) and g) but after the time-series of Campylobacter cases were adjusted using a seven day rolling mean, removal of bank holiday artefacts and adjusted for long term trend. (PDF 1032 kb)
MOESM1 of A facile preparation of FePt-loaded few-layer MoS2 nanosheets nanocomposites (F-MoS2-FePt NCs) and their application for colorimetric detection of H2O2 in living cells
Creators: name: Zunfu Hu
name: Zhichao Dai
name: Xiaowei Hu
name: Baochan Yang
name: Qingyun Liu
name: Chuanhui Gao
name: Xiuwen Zheng
name: Yueqin Yu
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences

description: Additional file 1: Figure S1. The atomic force microscopy (AFM) images of the as-prepared Few-layers MoS2 nanosheets. Figure S2. The potential distribution of FePt-DMSA NPs. Figure S3. a TEM image of bulk MoS2 sheets; b HRTEM of MoS2-FePt. Figure S4. Image of FePt NPs before and after transferred from lipophilic to hydrophilic by DMSA via ligand exchange reaction. For the two phases, the upper layer is n-hexane, the lower is the water. Figure S5. a Images of MCF-7 cells incubated with TMB (1Â mM) and b L02 cells incubated with F-MoS2-FePt-PEG-FA and TMB (1Â mM). Table S1. Comparison of the linear range and the detection limit of H2O2 by means of different sensors.
Quarkonium production: velocity-scaling rules and long-distance matrix elements
Creators: name: Schuler, Gerhard A.
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The hierarchy of long-distance matrix elements (MEs) for quarkonium production depends on their scaling with the velocity $v$ of the heavy quark in the bound state. Ranges for the velocities in various bound states and uncertainties of colour-singlet MEs are estimated in a quark-potential model. Different possibilities for the scaling with $v$ of the MEs are discussed; they depend on the actual values of $v$ and the QCD scale. As an application, J/psi polarization in e^+e^- annihilation is discussed. The first non-perturbative estimates of colour-octet MEs are presented and compared with phenomenological determinations. Finally, various predictions of prompt quarkonium production at LEP are compared.
description: 17 pages, Latex, uses 12pt.sty and epsfig.sty, 2 figures
Signatures of Circumstellar Interaction in the Type IIL Supernova ASASSN-15oz
Creators: name: Bostroem, K. Azalee
name: Valenti, Stefano
name: Horesh, Assaf
name: Morozova, Viktoriya
name: Kuin, N. Paul M.
name: Wyatt, Samuel
name: Jerkstrand, Anders
name: Sand, David J.
name: Lundquist, Michael
name: Smith, Mathew
name: Sullivan, Mark
name: Hosseinzadeh, Griffin
name: Arcavi, Iair
name: Callis, Emma
name: Cartier, Régis
name: Gal-Yam, Avishay
name: Galbany, Lluís
name: Gutiérrez, Claudia
name: Howell, D. Andrew
name: Inserra, Cosimo
name: Kankare, Erkki
name: López, Kristhell Marisol
name: McCully, Curtis
name: Pignata, Giuliano
name: Piro, Anthony L.
name: Rodríguez, Ósmar
name: Smartt, Stephen J.
name: Smith, Kenneth W.
name: Yaron, Ofer
name: Young, David R.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Hydrogen-rich, core-collapse supernovae are typically divided into four classes: IIP, IIL, IIn, and IIb. In general, interaction with circumstellar material is only considered for Type IIn supernovae. However, recent hydrodynamic modeling of IIP and IIL supernovae requires circumstellar material to reproduce their early light curves. In this scenario, IIL supernovae experience large amounts of mass loss before exploding. We test this hypothesis on ASASSN-15oz, a Type IIL supernova. With extensive follow-up in the X- ray, UV, optical, IR, and radio we present our search for signs of interaction, and the mass-loss history indicated by their detection. We find evidence of short-lived intense mass-loss just prior to explosion from light curve modeling, amounting in 1.5 M$_{\odot}$ of material within 1800 R$_{\odot}$ of the progenitor. We also detect the supernova in the radio, indicating mass-loss rates of $10^{-6}-10^{-7}$ M$_{\odot}$ yr$^{-1}$ prior to the extreme mass-loss period. Our failure to detect the supernova in the X-ray and the lack of narrow emission lines in the UV, optical, and NIR do not contradict this picture and place an upper limit on the mass-loss rate outside the extreme period of $<10^{-4}$ M$_{\odot}$ yr$^{-1}$. This paper highlights the importance gathering comprehensive data on more Type II supernovae to enable detailed modeling of the progenitor and supernova which can elucidate their mass-loss histories and envelope structures and thus inform stellar evolution models.
description: Submitted to MNRAS including referee comments
MOESM4 of Highly sensitive MLH1 methylation analysis in blood identifies a cancer patient with low-level mosaic MLH1 epimutation
Creators: name: Dámaso, Estela
name: Canet-Hermida, Júlia
name: Vargas-Parra, Gardenia
name: Velasco, Àngela
name: Marín, Fátima
name: Darder, Esther
name: Valle, Jesús
name: Fernández, Anna
name: Izquierdo, Àngel
name: Mateu, Gemma
name: Oliveras, Glòria
name: Escribano, Carmen
name: Piñol, Virgínia
name: Uchima, Hugo-Ikuo
name: Soto, José
name: Hitchins, Megan
name: Farrés, Ramon
name: Lázaro, Conxi
name: Queralt, Bernat
name: Brunet, Joan
name: Capellá, Gabriel
name: Pineda, Marta
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Science Policy

description: Additional file 4: Figure S2. MLH1 promoter methylation analysis by Methylation-Specific Melting Curve Analysis (MS-MCA). A) Analytical sensitivity of the promoter C region. The assay displays a sensitivity threshold of 1%. B) Analytical sensitivity of the promoter D region. The assay shows sensitivity around 10%. C) Methylation analysis in blood from 10 healthy controls for the MLH1 C-region. All of them show the same melting curve pattern as the unmethylated control sample, indicating absence of methylation in healthy controls. D) Methylation analysis in blood from 18 patients harboring MLH1 methylated tumors for the promoter C region. Only case 29 displays low levels of methylation (around 1%). E) Methylation analysis in tumor and normal gastrointestinal tissues of case 29. F) Methylation analysis in buccal mucosa of case 29. G) Methylation analysis in skin fibroblasts of case 29.
Absence of Floating Delocalized States in a Two-Dimensional Hole Gas
Creators: name: Dultz, S. C.
name: Jiang, H. W.
name: Schaff, W. J.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: By tracking the delocalized states of the two-dimensional hole gas in a p-type GaAs/AlGaAs heterostructure as a function of magnetic field, we mapped out a phase diagram in the density-magnetic-field plane. We found that the energy of the delocalized state from the lowest Landau level flattens out as the magnetic field tends toward zero. This finding is different from that for the two-dimensional electron system in an n-type GaAs/AlGaAs heterostructure where delocalized states diverge in energy as B goes to zero indicating the presence of only localized states below the Fermi energy. The possible connection of this finding to the recently observed metal-insulator transition at B = 0 in the two-dimensional hole gas systems is discussed.
description: 10 pages, 4 Postscript figures, To be published in Physical Review B (Rapid Communications) 58, Sept. 15, 1998
Toward an Anthropocentric Approach for Hybrid Control Architectures: Case of a Furniture Factory
Creators: name: Valette, Etienne
name: El-Haouzi, Bril
name: Demesure, Guillaume
name: Boucinha, Vincent
Publisher: name: arXiv
Year: 2018
Subjects: subject: Computers and Society (cs.CY)
subject: FOS: Computer and information sciences

description: Typology of goods and services' consumption has changed. In order to adapt to this change, it is relevant for a company to turn toward new ways of production and management. Slowly, the concept of industry 4.0 starts to set up in manufacturing companies. Research on hybrid control systems favours achieving automated and flexible production system through "jidoka" (or au-tonomation) and Just In Time principles. Still, studies stay mainly techno-centred rather than anthropocentric. Parisot company suffers today of a lack of reactivity to its market and of a production tool maladjusted to customer's consumption habits. This article aims to sum up the company's current situation, and to introduce the project that intends to back it through its economic, technological and sociological transition toward a flexible, adaptive and sustainable human-centred manufacturing system.
The swimming of a deforming helix
Creators: name: Koens, Lyndon
name: Zhang, Hang
name: Moeller, Martin
name: Mourran, Ahmed
name: Lauga, Eric
Publisher: name: arXiv
Year: 2018
Subjects: subject: Biological Physics (physics.bio-ph)
subject: Soft Condensed Matter (cond-mat.soft)
subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: Many microorganisms and artificial microswimmers use helical appendages in order to generate locomotion. Though often rotated so as to produce thrust, some species of bacteria such Spiroplasma, Rhodobacter sphaeroides and Spirochetes induce movement by deforming a helical-shaped body. Recently, artificial devices have been created which also generate motion by deforming their helical body in a non-reciprocal way (Mourran et al., Adv. Mater., 29, 1604825, 2017). Inspired by these systems, we investigate the transport of a deforming helix within a viscous fluid. Specifically, we consider a swimmer that maintains a helical centreline and a single handedness while changing its helix radius, pitch and wavelength uniformly across the body. We first discuss how a deforming helix can create a non-reciprocal translational and rotational swimming stroke and identify its principle direction of motion. We then determine the leading-order physics for helices with small helix radius before considering the general behaviour for different configuration parameters and how these swimmers can be optimised. Finally, we explore how the presence of walls, gravity, and defects in the centreline allow the helical device to break symmetries, increase its speed, and generate transport in directions not available to helices in bulk fluids.
title: AI enabled RF sensing of Diversified Human-Centric Monitoring
Creators: name: Ge, Yao
Publisher: name: University of Glasgow
Year: 2024

description: This thesis delves into the application of various RF signaling techniques in HumanCentric Monitoring (HCM), specifically focusing on WiFi, LoRa, Ultra-wideband (UWB) radars, and Frequency Modulated Continuous Wave (FMCW) radars. Each of these technologies has unique properties suitable for different aspects of HCM. For instance, 77GHz FMCW radar signals demonstrate high sensitivity in detecting subtle human movements, such as heartbeat, contrasting with the capabilities of 2.4GHz/5GHz WiFi signals. The research extends to both large-scale and small-scale Human Activity Recognition (HAR), examining how ubiquitous communication signals like WiFi and LoRa can be utilized for large-scale HAR, while radar signals with higher central frequencies are more effective for small-scale motions, including heartbeat and mouth movements.

The thesis also identifies several unresolved challenges in the field. These include the underutilization of spatial spectral information in existing WiFi sensing technologies, the untapped potential of LoRa technology in identity recognition, the sensitivity of millimeterwave radar in detecting breathing and heartbeat against minor movements, and the lack of comprehensive datasets for mouth motion detection in silent speech recognition. Addressing these challenges, the paper proposes several innovative solutions: 
• A comprehensive analysis of methodologies for RF-based HCM applications, discussing challenges and proposing potential solutions for broader healthcare applications using wireless sensing. 
• Exploration of communication signals in HCM systems, especially focusing on WiFi and LoRa sensing. It introduces the continuous AoA-ToF maps method to enhance HCM system performance and the LoGait system, which uses LoRa signals for human gait identification, extending the sensing range to 20 meters. 
• Development of a FMCW radar-based structure for respiration detection, incorporating an ellipse normalization method to adjust distorted IQ signals, reducing the root mean square error by 30% compared to baseline methods. 
• Collection and analysis of a large-scale multimodal dataset for silent speech recognition and speech enhancement, including designing experiments to validate the dataset’s utility in a multimodal-based speech recognition system.
Roussoella pseudohysterioides D. Q. Dai & K. D. Hyde, Fungal Diversity
Creators: name: Wijayawardene, Nalin N.
name: Dissanayake, Lakmali S.
name: Li, Qi-Rui
name: Dai, Dong-Qi
name: Xiao, Yuanpin
name: Wen, Ting-Chi
name: Karunarathna, Samantha C.
name: Wu, Hai-Xia
name: Zhang, Huang
name: Tibpromma, Saowaluck
name: Kang, Ji-Chuan
name: Wang, Yong
name: Shen, Xiang- Chun
name: Tang, Li-Zhou
name: Deng, Chun-Ying
name: Liu, Yanxia
name: Kang, Yingqian
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Fungi
Ascomycota
Dothideomycetes
Pleosporales
Roussoellaceae
Roussoella
Roussoella pseudohysterioides

description: Roussoella pseudohysterioides D.Q. Dai & K.D. Hyde,   Fungal Diversity 82: 37 (2016)  (FIGURE 5)
 Index Fungorum Number: IF552026
 Saprobic on decaying bamboo culms. Sexual morph: Ascostromata forming under black area, including 3–5 locules, up to 3–5 mm long and 0.5–2 mm wide, slightly raised at maturity, irregular, black, coriaceous. Locules in vertical section 220–280 μm high, 180–330 μm diam., gregarious, subglobose to ellipsoidal, dark brown, with ostiolate opening. Peridium composed of dark brown cells comprising host and fungal tissues. Hamathecium comprising dense, 2–3.5 μm wide, cellular pseudoparaphyses, indistinctly septate, embedded in a gelatinous matrix. Asci 85–290 × 7.5–17.5 μm (x = 165×10.5 μm, n=30), 8-spored, bitunicate, cylindrical, with a short furcate pedicel, with an apical ocular chamber. Ascospore s 11–19.5 × 4–6.5 μm (x = 16.5×5.5 μm, n=30), uniseriate, fusiform-ellipsoidal, 1-septate, constricted at the septum, narrow at both ends, with striate wall ornamentation, some with obvious verrucose. Asexual morph: Undetermined.
 Material examined:— CHINA, Guizhou Province, Leigong Mountain National Nature Reserve, on dead culm of bamboo, July 2019, Q. R. Li 2019LGS13 (GMB0009), living cultures, GMBC0009 (new country record).
 Known hosts and distribution:— Guizhou, China, Thailand
 Known hosts:— Bamboo
 GenBank Numbers:— ITS: MW881445; LSU: MW 881451; RPB2: MW 883345
 Notes:— Roussoella, typified by Roussoella nitidula Sacc. & Paol. was introduced by Saccardo & Paoletti (1888). Most species of Roussoella were observed from monocotyledon, such as bamboo and palms (Dai et al. 2017; Hyde et al. 2018). Roussoella pseudohysterioides was originally introduced by Dai et al. (2017) isolated from Thailand. This is the first report of Roussoella pseudohysterioides discovered from China.
description: Published as part of Wijayawardene, Nalin N., Dissanayake, Lakmali S., Li, Qi-Rui, Dai, Dong-Qi, Xiao, Yuanpin, Wen, Ting-Chi, Karunarathna, Samantha C., Wu, Hai-Xia, Zhang, Huang, Tibpromma, Saowaluck, Kang, Ji-Chuan, Wang, Yong, Shen, Xiang- Chun, Tang, Li-Zhou, Deng, Chun-Ying, Liu, Yanxia & Kang, Yingqian, 2021, Yunnan-Guizhou Plateau: a mycological hotspot, pp. 1-31 in Phytotaxa 523 (1) on page 9, DOI: 10.11646/phytotaxa.523.1.1, http://zenodo.org/record/5571977
Is Data Clustering in Adversarial Settings Secure?
Creators: name: Biggio, Battista
name: Pillai, Ignazio
name: Bulò, Samuel Rota
name: Ariu, Davide
name: Pelillo, Marcello
name: Roli, Fabio
Publisher: name: arXiv
Year: 2018
Subjects: subject: Machine Learning (cs.LG)
subject: Cryptography and Security (cs.CR)
subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: Clustering algorithms have been increasingly adopted in security applications to spot dangerous or illicit activities. However, they have not been originally devised to deal with deliberate attack attempts that may aim to subvert the clustering process itself. Whether clustering can be safely adopted in such settings remains thus questionable. In this work we propose a general framework that allows one to identify potential attacks against clustering algorithms, and to evaluate their impact, by making specific assumptions on the adversary's goal, knowledge of the attacked system, and capabilities of manipulating the input data. We show that an attacker may significantly poison the whole clustering process by adding a relatively small percentage of attack samples to the input data, and that some attack samples may be obfuscated to be hidden within some existing clusters. We present a case study on single-linkage hierarchical clustering, and report experiments on clustering of malware samples and handwritten digits.
MOESM5 of Highly sensitive MLH1 methylation analysis in blood identifies a cancer patient with low-level mosaic MLH1 epimutation
Creators: name: Dámaso, Estela
name: Canet-Hermida, Júlia
name: Vargas-Parra, Gardenia
name: Velasco, Àngela
name: Marín, Fátima
name: Darder, Esther
name: Valle, Jesús
name: Fernández, Anna
name: Izquierdo, Àngel
name: Mateu, Gemma
name: Oliveras, Glòria
name: Escribano, Carmen
name: Piñol, Virgínia
name: Uchima, Hugo-Ikuo
name: Soto, José
name: Hitchins, Megan
name: Farrés, Ramon
name: Lázaro, Conxi
name: Queralt, Bernat
name: Brunet, Joan
name: Capellá, Gabriel
name: Pineda, Marta
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 5: Figure S3. MLH1 methylation analysis of the promoter C-region and intron 1 by pyrosequencing. A) and B) Analytical sensitivity analysis for the detection of methylation in MLH1 C-region (A) and intron 1 (B). The detection limits for both regions are 4% and 5% respectively, enabling the detection of positive samples as those with methylation values greater than 4 or 5%. C) and D) Methylation analysis in blood from case 29 and healthy controls (n=10 - 20) for the MLH1 C-region (C) and intron 1 (D). E) and F) Methylation analysis in normal colorectal mucosa from case 29 and Lynch patients (n=4) for MLH1 C-region (E) and intron 1 (F). G) and H) Methylation analysis in normal small bowel mucosa and gastric mucosa from case 29 for MLH1 C-region (G) and intron 1 (H). I) and J) Methylation analysis in normal and gastrointestinal tumor tissues in case 29 for MLH1 C-region (I) and intron 1 (J).
title: Preventing coastal erosion by biological denitrification
Creators: name: Ligeon, Manon
Publisher: name: Student Undergraduate Research E-journal!
Year: 2016

description: Coastal erosion is a major problem along sandy coastlines. Increasing the strength and stiffness of sand could be a possible strategy to prevent land loss. Recent studies have found that denitrifying bacteria may be able to increase erosion resistance by inducing precipitation of calcium carbonate. In this study bacteria obtained from different sites have been evaluated on their activity and efficiency in seawater conditions with different substrate concentrations. Both bacteria, one obtained from freshwater the other from a seawater environment, were found to be active and efficient in seawater. The most active and efficient combination turned out to be bacteria obtained from the North Sea at low substrate concentrations.
description: Student Undergraduate Research E-journal!, Vol 2 (2016): Student Research Conference 2016
Chern-Simons Theory for Quantum Hall Stripes
Creators: name: Rosenow, Bernd
name: Scheidl, Stefan
Publisher: name: arXiv
Year: 2000
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We develop a Chern-Simons theory to describe a two-dimensional electron gas in intermediate magnetic fields. Within this approach, inhomogeneous states emerge in analogy to the intermediate state of a superconductor. At half filling of the highest Landau level we find unidirectional charge-density-wave (CDW) solutions. With a semiclassical calculation we give an intuitive explanation of the change of CDW orientation in the presence of an in-plane magnetic field. An anisotropy in the electron band mass is suggested as a possible source of the reproducible orientation of the CDW.
description: 7 pages, 4 figures, uses EuroPhys.sty and EuroMacro.tex (included), improved calculation of anisotropic pinning
Tolypocladium W. Gams, Persoonia
Creators: name: Wijayawardene, Nalin N.
name: Dissanayake, Lakmali S.
name: Li, Qi-Rui
name: Dai, Dong-Qi
name: Xiao, Yuanpin
name: Wen, Ting-Chi
name: Karunarathna, Samantha C.
name: Wu, Hai-Xia
name: Zhang, Huang
name: Tibpromma, Saowaluck
name: Kang, Ji-Chuan
name: Wang, Yong
name: Shen, Xiang- Chun
name: Tang, Li-Zhou
name: Deng, Chun-Ying
name: Liu, Yanxia
name: Kang, Yingqian
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Fungi
Ascomycota
Sordariomycetes
Hypocreales
Ophiocordycipitaceae
Tolypocladium

description: Tolypocladium W. Gams,   Persoonia 6(2): 185 (1971)
 Tolypocladium used to be known as an asexually genus since it was described (Gams 1971) until Hodge et al. (1996) linked one sexual species to this genus. This genus was transferred in the family Ophiocordycipitaceae based on phylogenetic analyses (Sung et al. 2007). Many species of Elaphocordyceps and Chaunopycnis have been transferred to Tolypocladium, which was protected in the International Code of Nomenclature for algae, fungi, and plant (Kirk et al. 2013, Quandt et al. 2014).
description: Published as part of Wijayawardene, Nalin N., Dissanayake, Lakmali S., Li, Qi-Rui, Dai, Dong-Qi, Xiao, Yuanpin, Wen, Ting-Chi, Karunarathna, Samantha C., Wu, Hai-Xia, Zhang, Huang, Tibpromma, Saowaluck, Kang, Ji-Chuan, Wang, Yong, Shen, Xiang- Chun, Tang, Li-Zhou, Deng, Chun-Ying, Liu, Yanxia & Kang, Yingqian, 2021, Yunnan-Guizhou Plateau: a mycological hotspot, pp. 1-31 in Phytotaxa 523 (1) on page 11, DOI: 10.11646/phytotaxa.523.1.1, http://zenodo.org/record/5571977
Neutrinos and Physics Beyond the Standard Model
Creators: name: Valle, J. W. F.
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: A brief sketch is made of the present observational status of neutrino physics, with emphasis on the hints that follow from solar and atmospheric neutrino observations, as well as cosmological data on the amplitude of primordial density fluctuations. I also briefly review the ways to account for the observed anomalies and some of their implications.
description: Invited talk at KEK 4th Topical Conference on Flavor Physics, October 1996, to be published by Nuclear Physics Proceedings Supplements, latex file, 14 pages, including 9 figures, uses psfig.sty and espcrc2.sty
Relativistic Reflection: Review and Recent Developments in Modeling
Creators: name: Dauser, Thomas
name: García, Javier A.
name: Wilms, Jörn
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Measuring relativistic reflection is an important tool to study the innermost regions of the an accreting black hole system. In the following we present a brief review on the different aspects contributing to the relativistic reflection. The combined approach is for the first time incorporated in the new relxill model. The advantages of this more self-consistent approach are briefly summarized. A special focus is put on the new definition of the intrinsic reflection fraction in the lamp post geometry, which allows to draw conclusions about the primary source of radiation in these system. Additionally the influence of the high energy cutoff of the primary source on the reflection spectrum is motivated, revealing the remarkable capabilities of constraining $E_\mathrm{cut}$ by measuring relativistic reflection spectra from NuSTAR, preferably with lower energy coverage.
description: published in 2016 in Astronomische Nachrichten
MOESM6 of Highly sensitive MLH1 methylation analysis in blood identifies a cancer patient with low-level mosaic MLH1 epimutation
Creators: name: Dámaso, Estela
name: Canet-Hermida, Júlia
name: Vargas-Parra, Gardenia
name: Velasco, Àngela
name: Marín, Fátima
name: Darder, Esther
name: Valle, Jesús
name: Fernández, Anna
name: Izquierdo, Àngel
name: Mateu, Gemma
name: Oliveras, Glòria
name: Escribano, Carmen
name: Piñol, Virgínia
name: Uchima, Hugo-Ikuo
name: Soto, José
name: Hitchins, Megan
name: Farrés, Ramon
name: Lázaro, Conxi
name: Queralt, Bernat
name: Brunet, Joan
name: Capellá, Gabriel
name: Pineda, Marta
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 6: Figure S4. Immunohistochemical characterization of gastrointestinal tumor lesions from patient 29. All tumor lesions are well-differentiated adenocarcinomas with a variable but not predominant mucinous component. All of them present loss of expression of the cytokeratin markers CK7 and CK20. The transcription factor CDX2 shows strong and diffused positive staining. The expression of the membrane-bound proteins MUC1 and MUC5 is also positive in all tumors but with diffused and lower intensity staining, whereas the MUC2 shows intense, focal and heterogeneous expression. According to this characterization, the three tumors show the same immunohistochemical staining pattern. Objective magnification is 20X for all images. HE, hematoxylin-eosin.
Observation of exotic meson production in the reaction $ π^{-} p \to η^{\prime} π^- p$ at 18 GeV/c
Creators: name: Ivanov, E. I.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: An amplitude analysis of an exclusive sample of 5765 events from the reaction $π^{-} p \to η^{\prime} π^- p$ at 18 GeV/c is described. The $η^{\prime} π^-$ production is dominated by natural parity exchange and by three partial waves: those with $J^{PC} = 1^{-+}, 2^{++},$ and $4^{++}$. A mass-dependent analysis of the partial-wave amplitudes indicates the production of the $a_2(1320)$ meson as well as the $a_4(2040)$ meson, observed for the first time decaying to $η^{\prime}π^-$. The dominant, exotic (non-$q\bar{q}) $ $1^{-+}$ partial wave is shown to be resonant with a mass of $1.597 \pm 0.010^{+0.045}_{-0.010}$ GeV/c^2 and a width of $0.340 \pm 0.040 \pm 0.050$ GeV/c^2 . This exotic state, the $π_1(1600)$, is produced with a $t$ dependence which is different from that of the $a_2(1320)$ meson, indicating differences between the production mechanisms for the two states.
description: 5 pages with 4 figures