cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Pseudomecas nigricornis Martins & Galileo 1998
Creators: name: Groll, Elisa Von
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Pseudomecas
Pseudomecas nigricornis

description: Pseudomecas nigricornis Martins & Galileo, 1998
Martins & Galileo, 1998d:102.
Paratype ♂, BRAZIL, Minas Gerais: Teófilo Otoni, XI.1972, S. P. Nascimento col. (MCNZ 233.935).
description: Published as part of Groll, Elisa Von, 2017, Catalogue of Coleoptera type specimens housed in the collection of the Museu de Ciências Naturais, Fundação Zoobotânica do Rio Grande do Sul, Brazil, pp. 439-473 in Zootaxa 4318 (3) on page 446, DOI: 10.11646/zootaxa.4318.3.2, http://zenodo.org/record/887750
Additional file 5: of Identifying factors associated with the direction and significance of microRNA tumor-normal expression differences in colorectal cancer
Creators: name: Stevens, John
name: Herrick, Jennifer
name: Wolff, Roger
name: Slattery, Martha
Publisher: name: Figshare
Year: 2017
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer

description: (AF5_purple.pdf) Visualizations of “purple” outcomes of (lesser) interest – microRNAs that agree in the direction or non-significance of the tumor-normal test of differential expression in each factor level, but different from the overall test’s direction or significance. Each page of this file is in the same format as explained for each row in Fig. 2. (PDF 382 kb)
Tobacco industry targeting of African Americans
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: Recent reports call attention to substantial differential, negative health impacts of tobacco use among communities of color, and to troubling trends in tobacco use. Current-smoking rates among African American youth increased 80% from 1991 to 1997. Among all racial/ethnic groups, African Americans currently have the worst mortality from major tobacco related diseases. Because this group bears such a disproportionate burden of tobacco-related health problems, it is particularly urgent that researchers understand more about industry efforts to promote tobacco use in African American communities.

 Millions of pages of internal tobacco industry documents released as a result of several legal cases offer unprecedented opportunities to learn more about industry strategies for targeting African Americans. The documents contain information about strategies to promote tobacco and undermine tobacco control efforts. To date, however, no focused research on industry targeting of California African Americans has been undertaken. This project will provide pilot data and generate additional research questions to be explored in future studies aimed at developing countermarketing interventions to reduce tobacco use among California African Americans.

 The overall objectives of this project are to increase understanding of tobacco industry strategies for targeting African Americans and to assess responses to information found in the documents. The specific aims of the project are:

 1) Retrieve and analyze for countermarketing potential internal tobacco industry documents specifically related to tobacco industry targeting of California African Americans; and

 2) Gauge potential usefulness of the information found in documents for media/countermarketing intervention purposes by presenting information from the documents to focus groups of African Americans in at least two different California cities and analyzing their responses.
Heteromurus variabilis
Creators: name: Mayvan, Mahmood Mehrafrooz
name: Greenslade, Penelope
name: Sadeghi-Namaghi, Hussein
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Orchesellidae
Heteromurus
Heteromurus variabilis

description: Heteromurus variabilis (Martynova, 1974)
– Heteromurus variabilis Martynova, in Martynova et al. 1974: 66.
MAZ: Ghasemi Cherati 2017; Ghasemi Cherati et al. 2022; Vahedi Moghadam et al. 2022; NK: Mehrafrooz Mayvan et al. 2022a.
Ecology and habitat in Iran: forest leaf litter.
General distribution: Tajikistan (Martynova et al. 1974) and Iran.
description: Published as part of Mayvan, Mahmood Mehrafrooz, Greenslade, Penelope & Sadeghi-Namaghi, Hussein, 2023, An annotated checklist of the Collembola (Hexapoda) from Iran, pp. 1-101 in Zootaxa 5275 (1) on page 40, DOI: 10.11646/zootaxa.5275.1.1, http://zenodo.org/record/7898948
A comprehensive master plan report for the Town of Westfield, Union County, N. J., 1965
Creators: name: No Name Supplied
Publisher: name: No Publisher Supplied
Year: 1965

description: This Report is divided into three main parts. Part I deals with a study and analysis of existing conditions and background information pertaining to community development. All information has been analyzed and existing and future community development problems, resulting from this analysis, have been outlined in the Summary of each chapter.Part II deals with the specific Master Plan Proposals. It consists of four main sections; (1} the Future Land Use or Zoning Plan, (2) Street Plan, (3) Community Facilities Plan, and (4) the Central Business District Plan. After the Master Plan Report has been reviewed by the public and one or more public hearings have been held on Part II of the Report by the Planning Board, the Board will adopt Part II either as proposed or with changes which may result from comments made at the public hearing. The Master Plan is adopted·by the Planning Board by a simple resolution and may be amended from time to time after a public hearing, the same way it is adopted.Part III deals with the implementation of the Plan which will include, among other things, a discussion of carrying out the Plan; treating planning as a continuous function of municipal government; the Official Map which is a document adopted by the Governing Body by ordinance; and a suggested long range and short range Capital Improvement Program.
Additional file 6: of Identifying factors associated with the direction and significance of microRNA tumor-normal expression differences in colorectal cancer
Creators: name: Stevens, John
name: Herrick, Jennifer
name: Wolff, Roger
name: Slattery, Martha
Publisher: name: Figshare
Year: 2017
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: (AF6_yellow.pdf) Visualizations of â  yellowâ   outcomes of interest â   microRNAs that are overall significant in the tumor-normal test of differential expression, with agreement in one factor level but opposite direction in the other factor level. Each page of this file is in the same format as explained for each row in Fig. 2. (PDF 20 kb)
MOESM1 of Sentiment analysis methods for understanding large-scale texts: a case for using continuum-scored words and word shift graphs
Creators: name: Reagan, Andrew
name: Danforth, Christopher
name: Tivnan, Brian
name: Williams, Jake
name: Dodds, Peter
Publisher: name: Figshare
Year: 2017
Subjects: subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics

description: Supplementary Material. (pdf)
BUL FUNKSIYALARI. ULARNING BERILISH USULLARI. BUL FUNKSIYALARI SONI. BUL ALGEBRASI QONUNLARI
Creators: name: Jumayeva, Durdona
name: Nurullayeva, Malika
name: Yaxiyaxonova, Muxiba
Publisher: name: Zenodo
Year: 2025

description: “Bul funksiyasi. Ularning berilish usullari. Bul funktsiyalari soni. Bul vazifalari, maʻlum bir toʻplamdan toʻplamga qarab berilgan tavsiflarni ifodalovchi matematik funksiyalar sifatida belgilanadi. Ularning berilish usullari, asosan, grafik, jadval va formulalar orqali amalga oshirish. Bul funktsiyalari soni, muayyan toʻplam jarayonining birlashmasi bogʻliq boʻlib, bu mavzu oʻquvchilarni kombinatorika va analit. Ushbu mavzu, talabalarni bul matematikasida chuqurroq bilim olishlari va amaliy masalalarni yechishda yuklashga yordam beradi. Annotatsiya, mustaqil, mavzuning qobiliyati va uning zamonaviy matematikada oʻrnini taʻkidlaydi.
First annual report of the Atlantic County Mosquito Extermination Commission
Creators: name: Lipman, Jacob G.
name: Darnall, Wm. Edgar
name: Guion, E.
name: Eaton, Harold I.
Publisher: name: No Publisher Supplied
Year: 1913

description: This first annual Bergen County Mosquito Extermination Commission Report is an approved statement of the plans, methods and estimates for 'mosquito extermination work in Atlantic County for the year 1912.
MOESM1 of Urban–rural inequalities in suicide mortality: a comparison of urbanicity indicators
Creators: name: M. Helbich
name: V. Blüml
name: T. Jong
name: P. Plener
name: M.-P. Kwan
name: N. Kapusta
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Science Policy

description: Additional file 1: Table A1. Descriptive statistics. Table A2. Correlation between urbanicity indicators. Table A3. Regression results of the best performing model 11. Figure A1. Model performances for different urban–rural measures.
Axis kuhlii
Creators: name: Don E. Wilson
name: Russell A. Mittermeier
Publisher: name: Lynx Edicions
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Artiodactyla
Cervidae
Axis
Axis kuhlii

description: 15.
Bawean Deer
Axis kuhlii
French: Cerf de Kuhl / German: Bawean-Schweinshirsch / Spanish: Axis de Bawean
Taxonomy. Cervus kuhlii Temminck, 1836,
Bawean Island.
It has often been treated as a subspecies of A. porcinus and more recently it has been related to the extinct A. lydekkerii of Pleistocene. Fossils document an ancient occurrence in Java. The scientific name refers to the German naturalist H. Kuhl, who visited the East Indies in 1820-1821. Monotypic.
Distribution. Bawean I, offJava.
Descriptive notes. Head—body 130-140 cm, tail 17-20 cm, shoulder height 60-70 cm; weight of adult bucks 40-60 kg. Medium-sized short-legged deer with a bushy tail; males with prominent pedicles and relatively short three-tined antlers 30-45 cm in length. The coat is brown. Newborn fawns are not spotted. Pedicles begin to grow at six months of age, the first set of antlers at about eight months of age.
Habitat. It is more common in hilly secondary forests.
Food and Feeding. Primarily feeds on forbs and grasses but also on leaves and twigs.
Breeding. Males may reproduce in every month of the year. Mating season peaks between July and December and births between February and June. Pregnancy lasts about 225-230 days. There is a postpartum estrus; interbirth intervals are about nine months. Feral dogs and pythons are the main predators.
Activity patterns. Mainly nocturnal.
Movements, Home range and Social organization. It is typically solitary.
Status and Conservation. CITES Annex I. Classified as Critically Endangered on The IUCN Red List. In the 1960s—-1970s hunting and conversion to teak plantations caused a decline of the population, which now numbers around 300-500 individuals. Hunting ban began in 1977.
Bibliography. Blouch & Atmosoedirdjo (1987), Groves & Grubb (1987), Meijaard & Groves (2004), Semiadi, Pudyatmoko et al. (2008), Semiadi, Subekti et al. (2003).
description: Published as part of Don E. Wilson & Russell A. Mittermeier, 2011, Cervidae, pp. 350-443 in Handbook of the Mammals of the World – Volume 2 Hoofed Mammals, Barcelona :Lynx Edicions on pages 415-416, DOI: 10.5281/zenodo.6514377
Orchesella cincta
Creators: name: Mayvan, Mahmood Mehrafrooz
name: Greenslade, Penelope
name: Sadeghi-Namaghi, Hussein
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Orchesellidae
Orchesella
Orchesella cincta

description: Orchesella cincta (Linnaeus, 1758)
– Podura cincta Linnaeus, 1758: 609.
MAZ: Yoosefi Lafooraki 2014; Yoosefi Lafooraki & Shayanmehr 2013b, 2014a; Balvasi et al. 2015; Yahyapour et al. 2018, 2019, 2020a; Ghasemi Cherati et al. 2022; Vahedi Moghadam et al. 2022; NK: Mehrafrooz Mayvan et al. 2022a; GO: Hosseini et al. 2016a.
Ecology and habitat in Iran: soil and leaf litter near alder trees, moss on the rock and natural compost.
General distribution: Northeastern Nearctic and Palaearctic (Babenko et al. 2019).
description: Published as part of Mayvan, Mahmood Mehrafrooz, Greenslade, Penelope & Sadeghi-Namaghi, Hussein, 2023, An annotated checklist of the Collembola (Hexapoda) from Iran, pp. 1-101 in Zootaxa 5275 (1) on page 40, DOI: 10.11646/zootaxa.5275.1.1, http://zenodo.org/record/7898948
Recchia moema Martins & Galileo 1998
Creators: name: Groll, Elisa Von
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Recchia
Recchia moema

description: Recchia moema Martins & Galileo, 1998
Martins & Galileo, 1998d:74, fig. 49.
Paratypes ♂, ♀, ARGENTINA, Entre Rios: Liebig, XI.19887, col. (MCNZ 124.508, 124.509).
description: Published as part of Groll, Elisa Von, 2017, Catalogue of Coleoptera type specimens housed in the collection of the Museu de Ciências Naturais, Fundação Zoobotânica do Rio Grande do Sul, Brazil, pp. 439-473 in Zootaxa 4318 (3) on page 447, DOI: 10.11646/zootaxa.4318.3.2, http://zenodo.org/record/887750
Additional file 7: of Identifying factors associated with the direction and significance of microRNA tumor-normal expression differences in colorectal cancer
Creators: name: Stevens, John
name: Herrick, Jennifer
name: Wolff, Roger
name: Slattery, Martha
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: (AF7_results.csv) Spreadsheet file for all outcomes of interest, including the FDR-adjusted p-values and sample sizes for all site / factor / microRNA combinations that were classified to one of the five categories (colors) in Table 2. (CSV 199 kb)
Smoking & the pathogenesis of macular degeneration
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: Macular degeneration is the eye disease that is the leading cause of blindness in people over the age of 60 in this country. The disease causes the death of the light sensitive “photoreceptor” cells in a specialized part of the retina called the macula, thus the name macular degeneration. The macula is a small but very important part of the retina; it is responsible for “fine acuity vision”, the vision one uses when driving, reading, sewing, watching television or any activity requiring fine focus. Unfortunately, no treatment has been shown to be consistently effective in preventing macular degeneration or reversing the loss of vision caused by the disease.

 A number of clinical studies have shown that people who smoke cigarettes are two to four times more likely to suffer loss of vision due to macular degeneration than are non-smokers. The studies detailed in this proposal will begin to determine why, at the most basic cellular and molecular levels, this is true. The studies will address one hypothesis that has been advanced to explain the relationship between smoking and macular degeneration, that of smoking-induced oxidative stress. We will determine experimentally whether oxidative stress causes abnormalities in the “retinal pigmented epithelial cells” of the eye. These “RPE” cells are important to the survival and well being of the photoreceptor cells of the retina, and dysfunction in these cells is regarded as a key element in the development of macular degeneration.

 The goal of the studies is to assess whether, under experimental oxidative stress, RPE cells exhibit abnormal patterns of production of molecules that (1) form harmful deposits called drusen in the eyes of individuals with macular degeneration or (2) are involved in stimulating the growth of blood vessels in the neovascular or “wet” form of the disease. These studies will lead to a better understanding of the relationship between smoking and macular degeneration and have the potential to lead to the development of treatments that will reduce visual loss due to this devastating disease.
Orchesella flavescens
Creators: name: Mayvan, Mahmood Mehrafrooz
name: Greenslade, Penelope
name: Sadeghi-Namaghi, Hussein
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Orchesellidae
Orchesella
Orchesella flavescens

description: Orchesella flavescens (Bourlet, 1839)
– Heterotoma flavescens Bourlet, 1839: 395.
NK: Mehrafrooz Mayvan et al. 2022a.
Ecology and habitat in Iran: soil under Alyssum inflatum in pastureland.
General distribution: Palaearctic (Dányi & Traser 2008).
description: Published as part of Mayvan, Mahmood Mehrafrooz, Greenslade, Penelope & Sadeghi-Namaghi, Hussein, 2023, An annotated checklist of the Collembola (Hexapoda) from Iran, pp. 1-101 in Zootaxa 5275 (1) on page 40, DOI: 10.11646/zootaxa.5275.1.1, http://zenodo.org/record/7898948
Recchia procera Martins & Galileo 1985
Creators: name: Groll, Elisa Von
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Recchia
Recchia procera

description: Recchia procera Martins & Galileo, 1985
Martins & Galileo, 1985:486.
Paratype ♀, BRAZIL, São Paulo: Umuarama (1800 m), 08–15.III.1937, Gagarin col. (MCNZ 122.885).
description: Published as part of Groll, Elisa Von, 2017, Catalogue of Coleoptera type specimens housed in the collection of the Museu de Ciências Naturais, Fundação Zoobotânica do Rio Grande do Sul, Brazil, pp. 439-473 in Zootaxa 4318 (3) on page 447, DOI: 10.11646/zootaxa.4318.3.2, http://zenodo.org/record/887750
Axis calamianensis
Creators: name: Don E. Wilson
name: Russell A. Mittermeier
Publisher: name: Lynx Edicions
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Artiodactyla
Cervidae
Axis
Axis calamianensis

description: 16.
Calamian Deer
Axis calamianensis
French: Cerf des Calamian / German: Calamian-Schweinshirsch / Spanish: Axis de Calamianes
Taxonomy. Cervus calamianensis Heude, 1888,
Calamian Islands.
It has previously been treated as a subspecies of A. porcinus. Monotypic.
Distribution. Calamian Is (Busuanga, Calauit, Culion, Marily & Dimaquiat).
Descriptive notes. Head-body on average 130 cm, tail 20 cm, shoulder height 60— 75 cm; weight 35-50 kg. Medium-sized, relatively long-legged deer with a bushy tail; males have prominent pedicles and short three-tined antlers 20-30 cm in length. The coat is tawny brown, with legs much darker than body; the muzzle is whitish.
Habitat. It lives in grasslands, open woodlands, secondary forests.
Food and Feeding. It primarily feeds on forbs and grasses but also on leaves and twigs.
Breeding. Females attain puberty at about 8-15 months of age. After a gestation of around 222-226 days they give birth to a single fawn weighing 1.1-6 kg. Fawns are able to suckle an hour after birth. Weaning occurs after 4-6 months.
Activity patterns. It is diurnal and crepuscular.
Movements, Home range and Social organization. It is often observed in small groups.
Status and Conservation. CITES Annex I. Classified as Endangered on The IUCN Red List. In 1996 the total population size was estimated at 550 animals. It is decreasing; hunting pressure and agricultural expansion are major threats.
Bibliography. Groves & Grubb (1987), Villamor (1987, 1991), Wemmer (1998).
description: Published as part of Don E. Wilson & Russell A. Mittermeier, 2011, Cervidae, pp. 350-443 in Handbook of the Mammals of the World – Volume 2 Hoofed Mammals, Barcelona :Lynx Edicions on page 416, DOI: 10.5281/zenodo.6514377
MPA Europe Deliverable 2.8 Climate velocity map for European seas under recent conditions
Creators: name: Burrows, Michael T.
name: Assis, Jorge
name: Principe, Silas C.
Publisher: name: Zenodo
Year: 2025

description: Disclaimer: This is document is part of a deliverable not yet approved by the European Commission. The present document outlines the creation of the climate velocity map for the MPA Europe study area under current conditions.
Orchesella spectabilis Tullberg 1871
Creators: name: Mayvan, Mahmood Mehrafrooz
name: Greenslade, Penelope
name: Sadeghi-Namaghi, Hussein
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Orchesellidae
Orchesella
Orchesella spectabilis

description: Orchesella spectabilis Tullberg, 1871
– Orchesella spectabilis Tullberg, 1871: 147.
MAZ: Ghasemi Cherati 2017; Ghasemi Cherati et al. 2022.
Ecology and habitat in Iran: leaf litter.
General distribution: Palaearctic (Fjellberg 2007).
description: Published as part of Mayvan, Mahmood Mehrafrooz, Greenslade, Penelope & Sadeghi-Namaghi, Hussein, 2023, An annotated checklist of the Collembola (Hexapoda) from Iran, pp. 1-101 in Zootaxa 5275 (1) on page 40, DOI: 10.11646/zootaxa.5275.1.1, http://zenodo.org/record/7898948
Suipinima suturalis Martins & Galileo 2004
Creators: name: Groll, Elisa Von
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Suipinima
Suipinima suturalis

description: Suipinima suturalis Martins & Galileo, 2004
Martins & Galileo, 2004c:399, fig. 7.
Paratype ♂, BOLIVIA, Santa Cruz: Buena Vista (3,7 km SSE, Hotel Flora & Fauna, 17°29, 949’S, 63°33, 152’W, 405 m.), 05–15.XI.2001, C. Thomas & B. K. Dozier, col. (MCNZ 233.936).
description: Published as part of Groll, Elisa Von, 2017, Catalogue of Coleoptera type specimens housed in the collection of the Museu de Ciências Naturais, Fundação Zoobotânica do Rio Grande do Sul, Brazil, pp. 439-473 in Zootaxa 4318 (3) on page 447, DOI: 10.11646/zootaxa.4318.3.2, http://zenodo.org/record/887750
Additional file 3: Table S3. of Public health surveillance in the UK revolutionises our understanding of the invasive Salmonella Typhimurium epidemic in Africa
Creators: name: Ashton, Philip
name: SiĂ˘N Owen
name: Lukeki Kaindama
name: Rowe, Will
name: Lane, Chris
name: Larkin, Lesley
name: Satheesh Nair
name: Jenkins, Claire
name: Pinna, Elizabeth De
name: Feasey, Nicholas
name: Hinton, Jay
name: Dallman, Timothy
Publisher: name: Figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: The antimicrobials used for susceptibility testing in this study. Figure S1. Isolate U60 contains additional resistance genes including a bla CTX-M-15 locus inserted into the chromosomal ompD locus. Figure S2. Circular representation of finished genome of UK-ST313 representative strain U2, showing the chromosome and the pSLT-U2 virulence plasmid. Figure S3. Fully labelled phylogenetic tree highlighting the context of subset of 16 UK-isolated ST313 strains included in phenotypic testing. Figure S4. The maximum clade credibility tree from BEAST showing the timed phylogeny of all ST313 isolated in this study and a representative sub-sample of African ST313 from Okoro et al. [7]. Figure S5. Distribution of pairwise SNP distances of lineage 2 ST313 and UK-ST313. (PDF 1193 kb)
Suipinima una Martins & Galileo. 2004
Creators: name: Groll, Elisa Von
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Suipinima
Suipinima una

description: Suipinima una Martins & Galileo. 2004
Martins & Galileo, 2004c:399, fig. 6.
Paratype ♀, BOLIVIA, Santa Cruz: Buena Vista (3,7 km SSE, Hotel Flora & Fauna, 430m), 15–22.XI.2001, B. K. Dozier col. (MCNZ 233.937).
description: Published as part of Groll, Elisa Von, 2017, Catalogue of Coleoptera type specimens housed in the collection of the Museu de Ciências Naturais, Fundação Zoobotânica do Rio Grande do Sul, Brazil, pp. 439-473 in Zootaxa 4318 (3) on page 447, DOI: 10.11646/zootaxa.4318.3.2, http://zenodo.org/record/887750
Additional file 3: Table S3. of Public health surveillance in the UK revolutionises our understanding of the invasive Salmonella Typhimurium epidemic in Africa
Creators: name: Ashton, Philip
name: SiĂ˘N Owen
name: Lukeki Kaindama
name: Rowe, Will
name: Lane, Chris
name: Larkin, Lesley
name: Satheesh Nair
name: Jenkins, Claire
name: Pinna, Elizabeth De
name: Feasey, Nicholas
name: Hinton, Jay
name: Dallman, Timothy
Publisher: name: Figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: The antimicrobials used for susceptibility testing in this study. Figure S1. Isolate U60 contains additional resistance genes including a bla CTX-M-15 locus inserted into the chromosomal ompD locus. Figure S2. Circular representation of finished genome of UK-ST313 representative strain U2, showing the chromosome and the pSLT-U2 virulence plasmid. Figure S3. Fully labelled phylogenetic tree highlighting the context of subset of 16 UK-isolated ST313 strains included in phenotypic testing. Figure S4. The maximum clade credibility tree from BEAST showing the timed phylogeny of all ST313 isolated in this study and a representative sub-sample of African ST313 from Okoro et al. [7]. Figure S5. Distribution of pairwise SNP distances of lineage 2 ST313 and UK-ST313. (PDF 1193 kb)
Cyphoderus agnotus Boner 1906
Creators: name: Mayvan, Mahmood Mehrafrooz
name: Greenslade, Penelope
name: Sadeghi-Namaghi, Hussein
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Paronellidae
Cyphoderus
Cyphoderus agnotus

description: Cyphoderus agnotus Böner, 1906
– Cyphoderus agnotus B̂ner, 1906: 180.
GO: Hosseini et al. 2016a.
Ecology and habitat in Iran: forest soil under stone.
General distribution: Boreal and Neotropical (Lima & Zeppelini 2021), and Iran.
description: Published as part of Mayvan, Mahmood Mehrafrooz, Greenslade, Penelope & Sadeghi-Namaghi, Hussein, 2023, An annotated checklist of the Collembola (Hexapoda) from Iran, pp. 1-101 in Zootaxa 5275 (1) on page 40, DOI: 10.11646/zootaxa.5275.1.1, http://zenodo.org/record/7898948
Gender differences in response to nicotine – role of Akt / Pim-1 signaling axis
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: There is no doubt that men and women have very different biology, and a large part of the reason for these differences are the sex hormones. Men have high levels of testosterone that gives them male characteristics, whereas women have very low testosterone levels and higher levels of estrogen that confers female characteristics. Estrogen has many actions in addition to simple sex differences, including actions on organs and tissues in the body other than the ovaries. Among the target tissues for estrogen action, the heart expresses estrogen receptors and responds to estrogen stimulation with increased resistance to damage. This protective action of estrogen has been suggested to decrease risk of cardiovascular disease in women compared to men until menopause, at which time estrogen production ceases and differences in risk between the sexes disappears. The benefit of estrogen in women can be lost by drug or chemical exposure that interferes with estrogen production or signaling to the heart. Accumulating evidence shows that nicotine has the ability to interfere with estrogen activity. This means that women who use tobacco products containing nicotine or use nicotine replacement therapies such as patches or chewing gum are likely to be lowering estrogen activity in their body – and that can then lead to increased risk for tissues like the heart that benefit from protection conferred by estrogen activity. This proposal will determine the ability of nicotine to interfere with estrogen-mediated protection in isolated heart cells and in the heart. We will use a mouse model to test the effect of nicotine on worsening the outcome following a heart attack. In addition, we will test a intervention intended to restore the protective signals lost after nicotine exposure in female mice by “rescuing” their hearts by restoring the protection that is lost because of nicotine’s interference with estrogen. The goal of the project is to demonstrate that women are placing themselves at greater risk for serious damage and disease in their hearts if they expose themselves to nicotine, especially prior to menopause in the prime of their life. This information will be valuable to educate women as to the increased risk they place themselves at by smoking, vaping, or thinking that nicotine-replacement therapy is a safe alternative to tobacco or vaping use.
Dama mesopotamica
Creators: name: Don E. Wilson
name: Russell A. Mittermeier
Publisher: name: Lynx Edicions
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Artiodactyla
Cervidae
Dama
Dama mesopotamica

description: 18.
Persian Fallow Deer
Dama mesopotamica
French: Daim de Perse / German: Mesopotamien-Damhirsch / Spanish: Gamo persa
Other common names: Mesopotamian Fallow Deer
Taxonomy. Cervus mesopotamicus Brooke, 1875,
Iran.
It has often been considered a subspecies of the Common Fallow Deer (D. dama). The northern part of the distribution was contiguous to the refugium range of the Common Fallow Deer. Monotypic.
Distribution. Iran and Israel (reintroduced). The map includes both the native relict population and the reintroduced ones.
Descriptive notes. Head-body 180-190 cm for males (adult bucks), 160-170 cm for females (does), tail 16-20 cm, shoulder height 100-110 cm (bucks), 90 cm (does); weight 120-140 kg (adult bucks) and 70-80 kg (adult does). Adult bucks are on average 50% heavier than does. Larger than the Common Fallow Deer, with minor differences in the color pattern of the coat and a distinct antler conformation. The dark upper edge of the rump patch is less developed and the shorter tail appears whitish except for the dark medial line, which is very thin. The naked rhinarium has a slightly different shape. The antlers are shorter, about 50-55 cm long, more robust, with a very short brow tine, a bez tine and a trez tine; some flattening is present in the lower half of the beam.
Habitat. The relict population in south-western Iran occurs in riparian woods of poplars, willows, and tamarisk.
Food and Feeding. As an intermediate feeder living in thickets and scrublands it is probably more a browser of leaves and buds.
Breeding. Rutting season in south-west Iran peaks in late August-September, with most of the births in March. Antler casting peaks in late February—early March.
Activity patterns. It is mainly crepuscular and nocturnal.
Movements, Home range and Social organization. Mainly solitary or lives in small groups.
Status and Conservation. CITES Appendix I. Classified as Endangered on The IUCN Red List. Originally its range included Palestine, Syria, Iraq, and Iran, and it was introduced into Cyprus about 8300 years ago. It has been represented in Assyrian and ancient Persian bas-reliefs and in an Armenian carpet. The two remnant wild populations (in Dez and in Karkeh Wildlife Refuges, south-west Iran) are on the verge of extinction, numbering a few dozen animals. Predators include Striped Hyenas (Hyaena hyaena), Gray Wolves (Canis lupus), and feral dogs. The populations in enclosures in North Iran and in Israel, a total of about 700 individuals, are slightly increasing.
Bibliography. Bar-David et al. (2005), Chapman & Chapman (1975), Haltenorth (1959), Jantschke (1990), Masseti et al. (2008), Rabiei (2008), Uerpmann (1987).
description: Published as part of Don E. Wilson & Russell A. Mittermeier, 2011, Cervidae, pp. 350-443 in Handbook of the Mammals of the World – Volume 2 Hoofed Mammals, Barcelona :Lynx Edicions on pages 416-417, DOI: 10.5281/zenodo.6514377
Developing a blood-based assay for early lung cancer detection
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: Lung cancer is the number one cause of cancer deaths in the U.S. and the vast majority of lung cancers are linked to smoking. The reason lung cancer is so deadly is that in the majority of patients it is diagnosed after it has spread to distant organs such as the brain, liver, or bone. Unfortunately, once lung cancer has spread it is considered incurable. However, patients who are diagnosed with “early stage” lung cancer that is confined to a single area in the lung can often be cured by removal (surgery) or destruction (radiation) of the tumor. Recently, lung cancer screening in current or former smokers has been shown to save lives by increasing the number of patients diagnosed with early stage cancers. However, while it is covered by insurance in the U.S., less than 5% of eligible patients currently receive it. There are multiple reasons for this poor uptake but they include the concern that CT screening has a high risk of false positives and difficulty of accessing high quality radiology facilities. To address this unmet need we propose to develop a new approach for lung cancer screening that is minimally invasive, can discover very early lung cancers, and requires only a blood draw. Our approach detects tiny amounts of DNA that are released into the blood stream by lung cancers. Our method detects these DNA molecules by simultaneously searching for specific changes in their sequence (mutations) and chemical modifications (methylation marks) that are unique to DNA from lung cancer cells. We have performed preliminary experiments that suggest our approach is feasible and now plan to evaluate it more thoroughly in a pilot clinical study. If successful, our method could be used together with CT scanning in order to reduce the number of unnecessary follow-up tests or could eventually even replace CT scans as the primary lung cancer screening test. If so, it could contribute to saving lives of patients with lung cancer.
Long-term Effects of Adolescent E-Cigarette Vapor on Drug Intake and Therapeutic Response
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: Tobacco/nicotine addiction remains the largest preventable cause of disease and death worldwide. Unfortunately, adolescent users have been greatly impacted by the targeted marketing of companies, which has led to a large number of ‘never tobacco smokers’ initiating use of e-cigarettes. This increase in nicotine use has also been coincident with legalization of cannabis in California, leading to increased availability and use of both nicotine and THC products by vulnerable youth populations. Using a rat model, these studies will examine the harmful effects of vaporized nicotine and THC on adolescent development, with a focus on the implications for addiction-related behaviors later in life. Further, given the limited number of individuals able to successfully quit nicotine and tobacco smoking, we will investigate whether such adolescent drug exposure alters the brain's responsiveness to treatment for nicotine cessation. Taken together, these studies seek to elucidate the adverse, long-term effects of nicotine- and THC- containing e-cigarette vapor on health, drug-taking behaviors, and drug quitting success with therapeutic treatment.
Additional file 12: Figure S8. of Sequence-based prediction of permissive stretches for internal protein tagging and knockdown
Creators: name: Oesterle, Sabine
name: Roberts, Tania
name: Widmer, Lukas
name: Mustafa, Harun
name: Panke, Sven
name: Billerbeck, Sonja
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Whole proteome analysis of E. coli. Relative surface accessibilities of observed permissive stretches (dark grey) and a random shuffling of permissive stretches (light grey) are plotted. The Overlap of both distributions appears in medium grey. The relative surface area (RSA) of a given single amino acid residue is calculated as the predicted accessible surface area in the polypeptide chain, relative to the maximal possible exposure of that residue in the center of a tri-peptide flanked with either glycine or alanine. The RSA of a site is calculated as the geometric mean of the RSAs of its flanking residues (see Methods). The RSA of a predicted stretch is then calculated as the maximum RSA of its constituent sitesâ   RSAs. (PDF 6 kb)
Cyphoderus albinus Nicolet 1842
Creators: name: Mayvan, Mahmood Mehrafrooz
name: Greenslade, Penelope
name: Sadeghi-Namaghi, Hussein
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Entomobryomorpha
Paronellidae
Cyphoderus
Cyphoderus albinus

description: Cyphoderus albinus Nicolet, 1842
– Cyphodeirus albinus Nicolet, 1842: 67.
GI: Daghighi 2012; TE: Qazi & Shayanmehr 2014; KH: Ramezani & Mossadegh 2016; KBH: Malek-Hosseini & Zamani 2017; IS: Yoosefi Lafooraki & Shayanmehr 2013b; Chalangar 2020; KS: Kahrarian et al. 2016b; Kahrarian 2019; MAZ: Yoosefi Lafooraki 2014; Yoosefi Lafooraki & Shayanmehr 2014a; Darvish-Motevalli 2016; KE: Abdolalizadeh 2018; Abdolalizadeh et al. 2019; KU: Ahmadi 2021; Ahmadi et al. 2023.
Ecology and habitat in Iran: soil and leaf litter in citrus garden and rice fields.
General distribution: Palaearctic (Fjellberg 2007).
description: Published as part of Mayvan, Mahmood Mehrafrooz, Greenslade, Penelope & Sadeghi-Namaghi, Hussein, 2023, An annotated checklist of the Collembola (Hexapoda) from Iran, pp. 1-101 in Zootaxa 5275 (1) on page 41, DOI: 10.11646/zootaxa.5275.1.1, http://zenodo.org/record/7898948
Vaping effects on adolescent airway mucosa
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: Electronic cigarette use, “vaping”, in high school increased 78% from 2017 to 2018 resulting in almost 1 in 3 high schoolers reporting recent use. Those who vape are also more likely to try smoking. With such an increase in users, there is major concern that vaping may lead to some of the same diseases as cigarette smoking. It has been well documented that conventional cigarette smoke is associated with chronic obstructive pulmonary disease (COPD) and increased susceptibility to respiratory infection, which increases symptoms and severity of COPD. Smoking causes acute and long term injury to the cells that line the airways, altering their normal structure and function. It is already known that electronic cigarette vapor (ECV) can acutely disrupt airway cell function but there is little information on whether long term vaping causes long term effects on those cells. Our preliminary data in airway cells grown in dishes indicate ECV exposure alters the types of cells and their function. A number of different cell types make up a healthy airway lining, however information on the effects of ECV at the single cell level is lacking. This information is needed to identify the cell types most affected by ECV and how the cell type and function changes with prolonged ECV exposure. In this application we propose to expose adolescent nonhuman primates to ECV for four weeks while sampling airway cells in order to assess the effects at the single cell level and establish a time course of recovery to normal structure and function. We hypothesize that vaping modulates airway cell turnover, differentiation, and response to injury through changes in a specific molecular pathway called Notch. The effects of vaping are not well understood and there is a critical need to understand disease potential due to the growing number of young users facing addiction. Further, while smokers may benefit if switching from cigarettes it is unknown to what extent lung disease may remain due to vaping.
Additional file 12: Figure S8. of Sequence-based prediction of permissive stretches for internal protein tagging and knockdown
Creators: name: Oesterle, Sabine
name: Roberts, Tania
name: Widmer, Lukas
name: Mustafa, Harun
name: Panke, Sven
name: Billerbeck, Sonja
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Infectious Diseases
subject: FOS: Health sciences

description: Whole proteome analysis of E. coli. Relative surface accessibilities of observed permissive stretches (dark grey) and a random shuffling of permissive stretches (light grey) are plotted. The Overlap of both distributions appears in medium grey. The relative surface area (RSA) of a given single amino acid residue is calculated as the predicted accessible surface area in the polypeptide chain, relative to the maximal possible exposure of that residue in the center of a tri-peptide flanked with either glycine or alanine. The RSA of a site is calculated as the geometric mean of the RSAs of its flanking residues (see Methods). The RSA of a predicted stretch is then calculated as the maximum RSA of its constituent sitesâ   RSAs. (PDF 6 kb)
Elucidating the Mechanism of Tobacco-Related Cardiac Defects using CRISPR Screening
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: Tobacco exposure during pregnancy can cause serious problems in the babies such as developmental defects in the heart and brain. Despite this well-known fact, the number of pregnant women who are smoking has been almost unchanged over the past decade. Congenital heart defects (CHDs), in which the heart does not develop normally before birth, are the most common type of birth defects, occurring in 1% of the newborns in the US. The cause of most CHDs is still unknown. Although some variations in our genomic DNA sequences (genetic variants) can cause CHDs, most CHDs do not have a single genetic cause. On the other hand, population-based studies have shown that non-hereditary environmental factors such as maternal smoking and viral infection increase the risk of CHDs. Animal studies have also shown that nicotine, the primary toxic component of smoking, affects heart development. Thus, CHDs are multi-factorial complex diseases, which are likely associated with genetic variants in combination with lifestyle and environmental factors. However, how genetic factors and environmental factors interact with each other in human to develop CHDs has not been studied well.

 My proposal aims to study the gene-environment interaction in nicotine-induced CHDs using iPSCs (induced pluripotent stem cells) and a cutting-edge CRISPR (clustered regularly interspaced short palindromic repeat) genome editing technology. While human iPSCs can make any cell type including heart cells in a dish, the recent CRISPR technology enables us to study many genes at once (called CRISPR screening). Thus, by taking advantage of these tools, it is now possible to study the function of many genes at once in human heart cells.

 I have already tested the combination of iPSCs with CRISPR screening and confirmed that my system was working well to identify genes which are important to make heart cells. In this proposal, I will utilize this platform to study the effect of nicotine on the heart development. The results will help us to understand not only how nicotine causes CHDs but also who are at risk of CHDs when exposed to tobacco. The information will become a new scientific evidence to disseminate the risk of maternal nicotine exposure to public.
Knight Walkers
Creators: name: Ramani, Prakash
name: Gomez, Michele
name: Erling, Doug
name: Fagan, Julie M.
Publisher: name: No Publisher Supplied
Year: 2010

description: Battling Obesity with Exercise
description: It is a well-known fact that obesity is an epidemic in the United States. Obesity can lead to diabetes, heart disease, high blood pressure and other illnesses. The prevalence of obesity is due to numerous factors including but not limited to genetic disposition, nutrition and diet, lifestyle choices and level of physical activity. One of the easiest of these factors to control is a person’s level of physical activity. Many people choose not to exercise regularly as they claim not to have enough time, money for a gym membership or home equipment, or that it is just too late to exercise in life to make a difference. Exercise can make a difference to improve health at any time of a person’s life. Walking is one of the easiest exercises to perform as most people are capable of walking. According to the American College of Sports Medicine (ACSM), only 30 minutes of moderately intense cardio exercise is needed five days a week to stay fit and healthy. This moderately intense cardio exercise can be achieved by walking. The program Knight Walkers aims to help people get into the habit of walking 30 minutes a day, while listening to educational or interesting podcasts to pass the time. While people walk, they will learn, and most importantly become more fit and healthy, by lowering their risk for diabetes, heart disease, high blood pressure and other diseases.