cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 2: Table S1. of ESAP plus: a web-based server for EST-SSR marker development
Creators: name: Piyarat Ponyared
name: Jiradej Ponsawat
name: Sissades Tongsima
name: Pusadee Seresangtakul
name: Chutipong Akkasaeng
name: Nathpapat Tantisuwichwong
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: A list of 15 SSR primers used to amplify DNA fragments by PCR reaction with genomic DNAs extracted from 15 sugarcane cultivars. (DOCX 15Â kb)
Clematis koreana Kom. Acta Horti Petropol.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Ranunculales
Ranunculaceae
Clematis
Clematis koreana

description: 124. Clematis koreana Kom. Acta Horti Petropol. 18: 431, 1901.
Lectotype (Grabovskaya-Borodina in Grubov, 2004: 141): Prov. Chamgian, distr. Musang, flumen Tumin-gan, sylvae trajectus Czaurien in itinere e Purion ad Musang, 21 V 1897, V. L. Komarov.
Syntype: Korea septentrionalis, flumen Tumin-gan, provincia Cham-gion, trajectus Piisan-ien ad meridiem ab pag. Pensekori ad fl. Ham muri, qui in Tumyn prope opp. Musang influit, 2 VI 1897, V. L. Komarov.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 200, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Additional file 1: Table S1. of A hydrophobic spine stabilizes a surface-exposed Îą-helix according to analysis of the solvent-accessible surface area
Creators: name: Liou, Yi-Fan
name: Huang, Hui-Ling
name: Shinn-Ying Ho
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Inorganic Chemistry
subject: Hematology
subject: Plant Biology

description: The physicochemical properties mined using IBCGA-SVR and used for knowledge discovery. (DOCX 15 kb)
Clematis spectabilis Palib. Acta Horti Petropol.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Ranunculales
Ranunculaceae
Clematis
Clematis spectabilis

description: *125. Clematis spectabilis Palib. Acta Horti Petropol. 17: 12, 1899.
Lectotype (Grabovskaya-Borodina, designated here) and isolectotypes (2): Seoul, V-VI 1886, Kalinowsky (LE - LE01001964).
In the protologue: .
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 200, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Additional file 3: Figure S1. of ESAP plus: a web-based server for EST-SSR marker development
Creators: name: Piyarat Ponyared
name: Jiradej Ponsawat
name: Sissades Tongsima
name: Pusadee Seresangtakul
name: Chutipong Akkasaeng
name: Nathpapat Tantisuwichwong
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Hematology
subject: Plant Biology

description: PCR amplification results of primer SU018 for 15 commercial cultivars of sugarcane (Saccharum spp.). (PPTX 894Â kb)
Additional file 4: Table S3. of Efficacy of therapeutic suggestions under general anesthesia: a systematic review and meta-analysis of randomized controlled trials
Creators: name: Rosendahl, Jenny
name: Koranyi, Susan
name: Jacob, Davina
name: Zech, Nina
name: Ernil Hansen
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Results of sensitivity analyses for the exclusion of approximated effect sizes and effect sizes which were set to zero, and for the exclusion of small samples. (DOCX 18Â kb)
Crataegus komarovii Sarg.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Rosales
Rosaceae
Crataegus
Crataegus komarovii

description: 126. Crataegus komarovii Sarg.
Pl. Wilson. 1, 2: 183, 1912.
Lectotype (Buzunova in Grubov, 2004: 147): In valle Segelsu-Korani, systema fontium fl. Tumin-gan, via ab oppid. Musang ad fl. Jalu, 16-18 VI 1897, V. L. Komarov.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 200, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Additional file 1: Figure S1. of Molecular modeling and lead design of substituted zanamivir derivatives as potent anti-influenza drugs
Creators: name: Dhwani Dholakia
name: Sukriti Goyal
name: Jamal, Salma
name: Singh, Aditi
name: Asmita Das
name: Abhinav Grover
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Graph depicting number of hydrogen bonds between H1N1 and AMA across simulations. Figure S2. Figure comparing the conformation of AMA and Zanamivir in (a) H1N1 and (b) H3N2. Figure S3. Interacting residues of (a) H1N1 and (b) H3N2 with Zanamivir. Table S1: Structures and anti-influenza activity of acylguanidine zanamivir derivatives. Table S2. Table showing correlation between IC50 and docking scores of most and least active dataset compounds. (DOCX 1691 kb)
Additional file 2: Table S1. of SCMBYK: prediction and characterization of bacterial tyrosine-kinases based on propensity scores of dipeptides
Creators: name: Vasylenko, Tamara
name: Liou, Yi-Fan
name: Po-Chin Chiou
name: Hsiao-Wei Chu
name: Yung-Sung Lai
name: Chou, Yu-Ling
name: Huang, Hui-Ling
name: Shinn-Ying Ho
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics

description: Leave-one-phylum-out test is applied to evaluate SCMBYK. (DOCX 14 kb)
Crataegus pinnatifida var. psilosa C. K. Schneid.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Rosales
Rosaceae
Crataegus
Crataegus pinnatifida
Crataegus pinnatifida bunge var. psilosa c.k. schneid.

description: *127. Crataegus pinnatifida Bunge var. psilosa C.K. Schneid.
Ill. Handb. Laubholzk. 1: 769, 1906.
Syntype: Vallis flum. Tupongo, affluentia flum. Tumyngan, ad Cherion, Pineta in declive, 18 V 1897, V. L. Komarov.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 200, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Foliar infections by Botrytis cinerea modulate the tomato root volatilome and microbiome
Creators: name: Rizaludin, Muhammad Syamsu
name: Lee Diaz, Ana Shein
name: Zweers, Hans
name: Raaijmakers, Jos
name: Garbeva, Paolina
Publisher: name: Zenodo
Year: 2024

description: This study examines how B. cinerea foliar infection influences the root volatilome and microbiome of two tomato genotypes, wild Solanum pimpinellifolium and domesticated Solanum lycopersicum. In this respository, the raw data for mass feature (.cdf file) as well as the metadata (.xlsx) are deposited.
Additional file 1: Table S1. of A systematic scoping review of the evidence for consumer involvement in organisations undertaking systematic reviews: focus on Cochrane
Creators: name: Morley, Richard
name: Norman, Gill
name: Golder, Su
name: Griffith, Polly
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: Science Policy
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Surveys at organisational level. Table S2: Surveys and case reports of involvement by individual CRGs. Table 3: Reports of involvement in individual systematic reviews - case reports. (DOCX 57 kb)
Dryas nervosa Juz. Bull. Jard. Bot. Princip. URSS
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Rosales
Rosaceae
Dryas
Dryas nervosa

description: 128. Dryas nervosa Juz. Bull. Jard. Bot. Princip. URSS, 28, 3-4: 320, 1929.
Holotype: In schistosis declivium montis Pei-shan supra silvas, ca 7000′, 24 V 1897, Anert.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 200, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Additional file 8: of The gene-expression profile of renal medulla in ISIAH rats with inherited stress-induced arterial hypertension
Creators: name: Ryazanova, Marina
name: Fedoseeva, Larisa
name: Ershov, Nikita
name: Efimov, Vadim
name: Arcady Markel
name: Redina, Olga
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology

description: Primers used in real-time PCR. (DOC 33 kb)
Additional file 2: Table S2. of Efficacy of therapeutic suggestions under general anesthesia: a systematic review and meta-analysis of randomized controlled trials
Creators: name: Rosendahl, Jenny
name: Koranyi, Susan
name: Jacob, Davina
name: Zech, Nina
name: Ernil Hansen
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Science Policy

description: Risk of bias in individual studies. (DOCX 17Â kb)
Filipendula multijuga var. koreana Nakai, Repert. 2013, Spec. Nov.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Rosales
Rosaceae
Filipendula
Filipendula multijuga
Filipendula multijuga maxim. var. koreana nakai, repert.

description: *129. Filipendula multijuga Maxim. var. koreana Nakai, Repert. Spec. Nov.
Regni Veg. 13: 274, 1914.
Isotype: Distr. oppid. Samsu, in sylvis prope trajectum Ibai-ien super pagum Naran prope fl. Jalu, 6 VII 1897, V. L. Komarov.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 200, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Additional file 2: Appendix 1. of A systematic scoping review of the evidence for consumer involvement in organisations undertaking systematic reviews: focus on Cochrane
Creators: name: Morley, Richard
name: Norman, Gill
name: Golder, Su
name: Griffith, Polly
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: Developmental Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: List of excluded or unobtainable studies. (DOCX 15 kb)
Rosa jaluana Kom. Acta Horti Petropol.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Rosales
Rosaceae
Rosa
Rosa jaluana

description: 130. Rosa jaluana Kom. Acta Horti Petropol. 22: 537, 1904.
Holotype: Korea septentrionalis, provincia Pen-nian, flumen Amnok-gan (=Jalu dsian), in sylvis in jugi Zatan-ien prope pagum Karami, 27 VI 1897, V. L. Komarov.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 200, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Additional file 2: of The gene-expression profile of renal medulla in ISIAH rats with inherited stress-induced arterial hypertension
Creators: name: Ryazanova, Marina
name: Fedoseeva, Larisa
name: Ershov, Nikita
name: Efimov, Vadim
name: Arcady Markel
name: Redina, Olga
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology

description: Heatmap of the differentially expressed genes in the renal medulla of the ISIAH and WAG rats. (PDF 50 kb)
Rosa koreana Kom. Acta Horti Petropol.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Rosales
Rosaceae
Rosa
Rosa koreana

description: 131. Rosa koreana Kom. Acta Horti Petropol. 18: 434, 1901.
Lectotype (Buzunova in Grubov, 2004: 152): Korea septentrionalis, in valle Segelsu, systema fontium fl. Tumin-gan, in rupibus in sylvis coniferis. 16 VI 1897, V. L. Komarov.
Syntype: In valle Segelsu-Korani prope trajectum Abuzsa, systema fontium fl. Tumin-gan, inter detritum lapidosum in sylvis, 18 VI 1897, V. L. Komarov.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 200, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Additional file 3: of The gene-expression profile of renal medulla in ISIAH rats with inherited stress-induced arterial hypertension
Creators: name: Ryazanova, Marina
name: Fedoseeva, Larisa
name: Ershov, Nikita
name: Efimov, Vadim
name: Arcady Markel
name: Redina, Olga
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy

description: Genes with detected expression in renal medulla of only one rat strain. (DOC 51 kb)
Additional file 5: Table S4. of Efficacy of therapeutic suggestions under general anesthesia: a systematic review and meta-analysis of randomized controlled trials
Creators: name: Rosendahl, Jenny
name: Koranyi, Susan
name: Jacob, Davina
name: Zech, Nina
name: Ernil Hansen
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Results of subgroup analyses for PONV and antiemetic use. (DOCX 20Â kb)
Rubus vaniotii H. Lev. Repert. 2013, Spec. Nov.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Rosales
Rosaceae
Rubus
Rubus vaniotii

description: *133. Rubus vaniotii H. Lév. Repert. Spec. Nov.
Regni Veg. 5: 280, 1908.
Isotype: Quelpaert, in sepibus prope Hongno, VI 1907, N 1577, U. Faurie.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 200, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Additional file 1: Table S1. of Exploiting the recognition code for elucidating the mechanism of zinc finger protein-DNA interactions
Creators: name: Shayoni Dutta
name: Spandan Madan
name: Durai Sundar
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Plant Biology

description: Detailed analysis of predictions against experimental data for Approaches 1 and 3 for all 16 GNN triplets for different finger (1, 2 or 3 positions). Experimental data involves target DNA sequence which binds to its respective helix3 on the ZFP at various positions (finger 1, finger 2 & finger 3) with the corresponding Kd values for determining experimental affinity between DNA and its respective ZFP. Approach 3 (all possible amino acids and modular binding mode) gives its top helix for the experimental DNA target with its rank and score respectively. Approach 1 (consensus amino acid and modular binding mode) gives its top helix for the experimental DNA target with its rank and IHBE score respectively. Approach 1 predicts zinc finger helices for experimental DNA targets accurately for Finger 3 followed by Finger 1, whereas Approach 3 does so for Finger 2. (DOCX 56 kb)
Additional file 1: of A study on the application of topic models to motif finding algorithms
Creators: name: Gutierrez, Josep Basha
name: Nakai, Kenta
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: This table shows the tools that were studied in the original assessment by Tompa et al. [1] and the two methods presented in this study, each one with a short description of their underlying methodologies. (DOCX 15 kb)
Additional file 6: of Genome-wide map of RNA degradation kinetics patterns in dendritic cells after LPS stimulation facilitates identification of primary sequence and secondary structure motifs in mRNAs
Creators: name: Yutaro Kumagai
name: Vandenbon, Alexis
name: Teraguchi, Shunsuke
name: Akira, Shizuo
name: Suzuki, Yutaka
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Multiple alignment of sequences found with each motif. Sequences found by searching with the motifs were aligned by Infernal and shown in Stockholm format. Refseq ID of the origin of the sequence, positions of the 3â ˛ UTR in the mRNAs of the Refseq ID, and positions of the sequence found by motif searching was shown in the left column. Common secondary structure (SS_cons) and consensus sequence (RF) are also shown. (PDF 214Â kb)
Additional file 12: Table S2. of Evaluating the effect of database inflation in proteogenomic search on sensitive and reliable peptide identification
Creators: name: Honglan Li
name: Joh, Yoon
name: Hyunwoo Kim
name: Eunok Paek
name: Lee, Sang-Won
name: Kyu-Baek Hwang
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology

description: Number of peptides with charge 2+ at 1% FDR identified from search against real proteogenomic databases using Comet. (DOCX 16Â kb)
Additional file 1: of Structural analyses of 2015-updated drug-resistant mutations in HIV-1 protease: an implication of protease inhibitor cross-resistance
Creators: name: Su, Chinh
name: Ling, Wei-Li
name: Wai-Heng Lua
name: Haw, Yu-Xuan
name: Gan, Samuel
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Plant Biology
subject: Computational Biology

description: Dynamic changes of pocket volumes of three wild type protease-PI complexes during 10 ns molecular dynamics simulation. The three wild type protease-PI complexes (DRV_0, LPV_0, and NFV_0) contain single residue substitutions S37N, L63P, and V3I respectively that contributed to shrink the PI-binding pocket as compared to the native protease [PDB:1ODW]. The fluctuation of pocket volume of the native protease is estimated based on the three PIs (DRV, LPV, and NFV), and is shown in gray shade (~1955 ± 213 Å3). The molecular dynamics simulations were performed in standard protocol for 2x5ns using AMBER14. (PDF 564 kb)
Rubus quelpaertensis H. Lev. Repert. 2013, Spec. Nov.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Rosales
Rosaceae
Rubus
Rubus quelpaertensis

description: *132. Rubus quelpaertensis H. Lév. Repert. Spec. Nov.
Regni Veg. 5: 280, 1908.
Syntype: In dumosis Quelpaert, VII 1907, N 1585, U. Faurie.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 200, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Additional file 5: of Genome-wide map of RNA degradation kinetics patterns in dendritic cells after LPS stimulation facilitates identification of primary sequence and secondary structure motifs in mRNAs
Creators: name: Yutaro Kumagai
name: Vandenbon, Alexis
name: Teraguchi, Shunsuke
name: Akira, Shizuo
name: Suzuki, Yutaka
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Scatter plot of alignment scores vs alignment lengths obtained from Cluster I. Scores and lengths of conserved alignments from Cluster I were plotted and shown. (PDF 238Â kb)
Karwinskia humboldtiana Zucc.
Creators: name: Sanchez-Flores, Oscar Angel
name: Carapia-Ruiz, Vicente Emilio
name: Coronado-Blanco, Juana Maria
name: Ruíz-Cancino, Enrique
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Rosales
Rhamnaceae
Karwinskia
Karwinskia humboldtiana

description: Karwinskia humboldtiana (Roemer & Schultes) Zucc. (Rhamnaceae)
DISTRIBUTION
Mexico, Tamaulipas (Victoria and Llera).
TYPE MATERIAL
HOLOTYPE: Puparium. MEXICO: Tamaulipas, Victoria, Ciudad Victoria, in K. humboldtiana 28-IX-2019, Cols. Sánchez-Flores, O.A. and Coronado-Blanco, J.M. Deposited at Colección Nacional de Insectos Instituto de Biología,Universidad Nacional Autónoma de México,Mexico City, Mexico.
PARATYPES: 62 puparia with same data as the holotype. Two paratypes deposited in the same collection; 10 deposited in the Museo de Insectos de la Facultad de Agronomía - Universidad Autónoma de Tamaulipas, Ciudad Victoria, Tamaulipas, Mexico; 30 in the personal collection of the first author (O. A. S. F.) and 20 in the personal collection of the second author (V. E. C. R.).
Other materials: 10 pupae. Mexico: Tamaulipas, Llera, Rancho Nuevo, in K. humboldtiana 27-X-2019. Col. Coronado-Blanco, J. M. A key to puparia of the 7 species of the genus Aleuropleurocelus group ceanothi was prepared.
description: Published as part of Sanchez-Flores, Oscar Angel, Carapia-Ruiz, Vicente Emilio, Coronado-Blanco, Juana Maria & Ruíz-Cancino, Enrique, 2020, Description of Aleuropleurocelus sampsoni sp. nov. (Hemiptera: Aleyrodidae) from Tamaulipas, Mexico, pp. 274 in Florida Entomologist 103 (2) on page 274, DOI: 10.1653/024.103.0219, http://zenodo.org/record/11493800
Additional file 7: Figure S5. of Evaluating the effect of database inflation in proteogenomic search on sensitive and reliable peptide identification
Creators: name: Honglan Li
name: Joh, Yoon
name: Hyunwoo Kim
name: Eunok Paek
name: Lee, Sang-Won
name: Kyu-Baek Hwang
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Medicine
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology

description: Peptide (charge 3+) identification results from search against simulated proteogenomic databases for human using X!Tandem. (DOCX 74Â kb)
Galium trifloriforme Kom.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Gentianales
Rubiaceae
Galium
Galium trifloriforme

description: 135. Galium trifloriforme Kom.
Acta Horti Petropol. 18: 428, 1901.
Syntypes: Korea septentrionalis, flumen Amnok-gan, solo muscoso in silva mixta declivii septentrionalis jugi Zatan-ien, 28 VI 1897, V. L. Komarov (2 sheets); Solo muscoso in silva declivii septentrionalis jugi Zatan-ien, in superiorem spatia fl. Jalu, 28 VI 1897, V. L. Komarov.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 200, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Additional file 4 of Between-species differences in gene copy number are enriched among functions critical for adaptive evolution in Arabidopsis halleri
Creators: name: Vasantika Suryawanshi
name: Talke, Ina
name: Weber, Michael
name: Eils, Roland
name: Brors, Benedikt
name: Clemens, Stephan
name: KrĂ¤Mer, Ute
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Gene copy number expansions (CNEs) and reductions (CNRs) in A. halleri relative to A. thaliana generated for two datasets, each comprising one of the two A. halleri hybridizations and its in-silico replicate displaying the same amount of within-sample variation as A. lyrata hybridizations. (PDF 23 kb)
Additional file 4: Figure S2. of Evaluating the effect of database inflation in proteogenomic search on sensitive and reliable peptide identification
Creators: name: Honglan Li
name: Joh, Yoon
name: Hyunwoo Kim
name: Eunok Paek
name: Lee, Sang-Won
name: Kyu-Baek Hwang
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology

description: Workflow of separate filtering FDR methods (DOCX 55Â kb)
Additional file 2: of Genome-wide map of RNA degradation kinetics patterns in dendritic cells after LPS stimulation facilitates identification of primary sequence and secondary structure motifs in mRNAs
Creators: name: Yutaro Kumagai
name: Vandenbon, Alexis
name: Teraguchi, Shunsuke
name: Akira, Shizuo
name: Suzuki, Yutaka
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Supplementary Methods. (PDF 514Â kb)
Galium taquetii H. Lev. Repert. 2013, Spec. Nov.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Gentianales
Rubiaceae
Galium
Galium taquetii

description: 134. Galium taquetii H. Lév. Repert. Spec. Nov.
Regni Veg. 10: 438, 1912.
Isolectotype: Quelpaert, in agris sub umbra arborum, VIII 1909, N 2954, Taquet.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 200, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Additional file 11: Figure S9. of Evaluating the effect of database inflation in proteogenomic search on sensitive and reliable peptide identification
Creators: name: Honglan Li
name: Joh, Yoon
name: Hyunwoo Kim
name: Eunok Paek
name: Lee, Sang-Won
name: Kyu-Baek Hwang
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Medicine
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology

description: Peptide (charge 3+) identification results from search against simulated proteogenomic databases for human using Comet. (DOCX 75Â kb)
Ruppia taquetii H. Lev. Repert. 2013, Spec. Nov.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Alismatales
Ruppiaceae
Ruppia
Ruppia taquetii

description: 136. Ruppia taquetii H. Lév. Repert. Spec. Nov.
Regni Veg. 9: 323, 1911.
Isotype: Quelpaert in lacunis salsuginosis insulae Saiseum, 6 VII 1910, N 4029, Taquet.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on pages 200-201, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Gomphidae Rambur 1842
Creators: name: Boderau, Mathieu
name: Engel, Michael S.
name: Stössel, Iwan
name: Nel, Andre
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Odonata
Gomphidae

description: Family Gomphidae Rambur, 1842
Subfamily Lindeniinae Jacobson & Bianchi, 1905
description: Published as part of Boderau, Mathieu, Engel, Michael S., Stössel, Iwan & Nel, Andre, 2024, The first fossil representative of the extant clubtail dragonfly genus Lindenia from the mid-Miocene of Öhningen, Germany, pp. 23-27 in Acta Palaeontologica Polonica 69 (1) on page 24, DOI: 10.4202/app.01123.2023, http://zenodo.org/record/10981193
Meliosma oldhamii Maxim.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Proteales
Sabiaceae
Meliosma
Meliosma oldhamii

description: 137. Meliosma oldhamii Maxim.
Bull. Acad. Sci. Pétersb. 12: 64, 1868.
Syntype: Korean archip., 1863, N 183, Oldham.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 201, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Additional file 3: Table S1. of Evaluating the effect of database inflation in proteogenomic search on sensitive and reliable peptide identification
Creators: name: Honglan Li
name: Joh, Yoon
name: Hyunwoo Kim
name: Eunok Paek
name: Lee, Sang-Won
name: Kyu-Baek Hwang
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer

description: Proportion of redundant peptides in decoy databases for simulated proteogenomic search. (DOCX 14Â kb)
Salix blinii H. Lev. Repert. 2013, Spec. Nov.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Malpighiales
Salicaceae
Salix
Salix blinii

description: *138. Salix blinii H. Lév. Repert. Spec. Nov.
Regni Veg. 10: 435, 1912.
Syntype: Quelpaert, in silvis secus torrentes Hallaisan, 1200 m, VI 1909, N 3249, Taquet.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 201, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Lindenia De Haan 1826
Creators: name: Boderau, Mathieu
name: Engel, Michael S.
name: Stössel, Iwan
name: Nel, Andre
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Odonata
Gomphidae
Lindenia

description: Genus Lindenia De Haan, 1826
Type species: Aeshna tetraphylla Vander Linden, 1825; Recent; Lago d’Averno, Italy.
description: Published as part of Boderau, Mathieu, Engel, Michael S., Stössel, Iwan & Nel, Andre, 2024, The first fossil representative of the extant clubtail dragonfly genus Lindenia from the mid-Miocene of Öhningen, Germany, pp. 23-27 in Acta Palaeontologica Polonica 69 (1) on page 24, DOI: 10.4202/app.01123.2023, http://zenodo.org/record/10981193
Salix hallaisanensis H. Lev. Repert. 2013, Spec. Nov.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Malpighiales
Salicaceae
Salix
Salix hallaisanensis

description: *139. Salix hallaisanensis H. Lév. Repert. Spec. Nov.
Regni Veg. 10: 435, 1912.
Isolectotype: Quelpaert in sylvis Hallaisan, 1200 m, VI 1909, N 3258, Taquet.
Syntypes: Quelpaert in herbidis, 1000 m, 5 VI 1908, N 1442, Taquet; Quelpaert, Sokpat, 1000 m, 6 VI 1908, N 1443, Taquet; Quelpaert in sylvis Hallaisan, 1200 m, VI 1909, N 3256, Taquet; Quelpaert in sylvis Hallaisan, 1200 m, VI 1909, N 3257, Taquet; Quelpaert in sylvis Hallaisan, circa 1200 m, VI 1909, N 3259, Taquet; Quelpaert in sylvis Hallaisan, 1200 m, N 3253, Taquet.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 201, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Salix hallaisanensis var. nervosa H. Lev. Repert. 2013
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Malpighiales
Salicaceae
Salix
Salix hallaisanensis
Salix hallaisanensis var. nervosa h. lév. repert.

description: *140. Salix hallaisanensis var. nervosa H. Lév. Repert.
Spec. Nov. Regni Veg. 10: 435, 1912.
Isotype: Quelpaert, Hallaisan, 1500 m, 12 VIII 1908, N 1444, Taquet.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 201, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Salix maximoviczii Kom.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Malpighiales
Salicaceae
Salix
Salix maximoviczii

description: 141. Salix maximoviczii Kom.
Acta Hort. Petropol. 18: 442, 1901.
Holotype: Korea septentrionalis ad ripas fl. Jalu-dsian paulo infra pagum Karami, 28 VI 1897, V. L. Komarov.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 201, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Melampyrum roseum var. setaceum Maxim. ex Palib
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Lamiales
Orobanchaceae
Melampyrum
Melampyrum roseum
Melampyrum roseum maxim. var. setaceum maxim. ex palib

description: 142. Melampyrum roseum Maxim. var. setaceum Maxim. ex Palib.
Acta Horti Petropol. 18: 168, 1900.
Lectotype (Popova in Grubov, 2004: 165) and isolectotype: Seoul, VII 1886, Kalinowsky.
Syntype: Söˇul, Gottsche, Herbarium A. Engler.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 201, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Pedicularis taquetii P. C. Tsoong, Kew Bull.
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Lamiales
Orobanchaceae
Pedicularis
Pedicularis taquetii

description: *144. Pedicularis taquetii P.C. Tsoong,
Kew Bull. 3: 447, 1954.
Isotype: Quelpaert, in herbidis Hallaisan, 1700 m, 7 IX 1908, N 1168, Taquet.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 201, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Additional file 5: Figure S3. of Evaluating the effect of database inflation in proteogenomic search on sensitive and reliable peptide identification
Creators: name: Honglan Li
name: Joh, Yoon
name: Hyunwoo Kim
name: Eunok Paek
name: Lee, Sang-Won
name: Kyu-Baek Hwang
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology

description: Comparison of peptide identification results between a pair of simulated and real proteogenomic databases of similar sizes for yeast and human. (DOCX 61Â kb)
Pedicularis coreana Bonati
Creators: name: Grabovskaya-Borodina, Alisa E.
name: Illarionova, Irina D.
name: Tatanov, Ivan V.
name: Lee, Byoung-Yoon
name: Lim, Chae Eun
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Lamiales
Orobanchaceae
Pedicularis
Pedicularis coreana

description: *143. Pedicularis coreana Bonati,
Bull. Soc. Bot. France, 54: 374, 1907.
Isotype: In petrosis montis des Diamants, 23 VI 1906, N 831, U. Faurie.
description: Published as part of Grabovskaya-Borodina, Alisa E., Illarionova, Irina D., Tatanov, Ivan V., Lee, Byoung-Yoon & Lim, Chae Eun, 2013, Type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE), pp. 191-202 in Journal of Species Research 2 (2) on page 201, DOI: 10.12651/JSR.2013.2.2.191, http://zenodo.org/record/8120244
Additional file 15: Table S4. of Evaluating the effect of database inflation in proteogenomic search on sensitive and reliable peptide identification
Creators: name: Honglan Li
name: Joh, Yoon
name: Hyunwoo Kim
name: Eunok Paek
name: Lee, Sang-Won
name: Kyu-Baek Hwang
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: 60506 Virology

description: Number of identified peptides at 1% FDR from the human splice graph database. (DOCX 15Â kb)
Additional file 1: of A fast exact sequential algorithm for the partial digest problem
Creators: name: Abbas, Mostafa
name: Bahig, Hazem
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Molecular Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: Science Policy
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Supplementary figure. Figure F1 a–c represents the behavior of the running time for BBd, BBb, and BBb2 algorithms with different values of M and fixed value of n. The values on the y-axis are in log-scale. In Figure a, the x-axis does not include the value of M = n * 10, because the running time is greater than 24 h. (PDF 8 kb)