cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
The DIRAC interware: current, upcoming and planned capabilities and technologies
Creators: name: Stagni, Federico
name: Tsaregorodtsev, Andrei
name: Haen, Christophe
name: Sailer, Andre
Publisher: name: Zenodo
Year: 2019

description: Efficient access to distributed computing and storage resources is mandatory for the success of current and future High Energy and Nuclear Physics Experiments. DIRAC is an interware to build and operate distributed computing systems. It provides a development framework and a rich set of services for the Workload, Data and Production Management tasks of large scientific communities. A single DIRAC installation provides a complete solution for the distributed computing of one, or more than one collaboration. The DIRAC Workload Management System (WMS) provides a transparent, uniform interface for managing computing resources. The DIRAC Data Management System (DMS) offers all the necessary tools to ensure data handling operations: it supports transparent access to storage resources based on multiple technologies, and is easily expandable. Distributed Data management can be performed, also using third party services, and operations are resilient with respect to failures. DIRAC is highly customizable and can be easily extended. For these reasons, a vast and heterogeneous set of scientific collaborations have adopted DIRAC as the base for their computing models. Users from different experiments can interact with the system in different ways, depending on their specific tasks, expertise level and previous experience using command line tools, python APIs or Web Portals. The requirements of the diverse DIRAC user communities and hosting infrastructures triggered multiple developments to improve the system usability: examples include the adoption of industry standard authorization and authentication infrastructure solutions, the management of diverse computing resources (cloud, HPC, GPGPU, etc.), the handling of high-intensity work and data flows, but also advanced monitoring and accounting using no-SQL based solutions and message queues. This contribution will highlight DIRAC's current, upcoming and planned capabilities and technologies.
Detection of space-time fluctuations by a model matter interferometer
Creators: name: Percival, Ian C.
name: Strunz, Walter T.
Publisher: name: arXiv
Year: 1996
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: In papers on primary state diffusion (Percival 1994, 1995), numerical estimates suggested that fluctuations in the space-time metric on the scale of the Planck time (10^-44s) could be detected using atom interferometers. In this paper we first specify a stochastic metric obtained from fluctuations that propagate with the velocity of light, and then develop the non-Markovian quantum state diffusion theory required to estimate the resulting decoherence effects on a model matter interferometer. Both commuting and non-commuting fluctuations are considered. The effects of the latter are so large that if they applied to some real atom interferometry experiments they would have suppressed the observed interference. The model is too crude to conclude that such fluctuations do not exist, but it does demonstrate that the small numerical value of the Planck time does not alone prevent experimental access to Planck-scale phenomena in the laboratory.
description: TeX, 23 pages, submitted to Proc. Roy. Soc. Lond
Causes and consequences of resisting herbivory: How long-lived plants avoid damage from diverse short-lived insect herbivores
Creators: name: Orians, Colin
name: Massad, Tara
name: Coley, Phyllis
Publisher: name: QUBES Educational Resources
Year: 2024

description: This module guides students through decades-long studies of tropical plant-insect interactions to elucidate the ecology and evolution of plant defenses while encouraging students to consider the importance of diversity and equity in scientific research.
Additional file 2 of Admixture as a source for HLA variation in Neolithic European farming communities
Creators: name: da Silva, Nicolas Antonio
name: Özer, Onur
name: Haller-Caskie, Magdalena
name: Chen, Yan-Rong
name: Kolbe, Daniel
name: Schade-Lindig, Sabine
name: Wahl, Joachim
name: Berszin, Carola
name: Francken, Michael
name: Görner, Irina
name: Schierhold, Kerstin
name: Pechtl, Joachim
name: Grupe, Gisela
name: Rinne, Christoph
name: Müller, Johannes
name: Lenz, Tobias L.
name: Nebel, Almut
name: Krause-Kyora, Ben
Publisher: name: figshare
Year: 2025
Subjects: Archaeology

description: Additional file 2. Supplementary Notes, Figures and Tables
title: Transcription du manuscrit de Semur-en-Auxois, Bibliothèque Municipale, ms. 1, p. 11
Creators: name: Aubert, Eduardo Henrik
name: Brochard, Pierre
name: Aubert, Eduardo Henrik
name: Brochard, Pierre
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2022
Subjects: subject: Laboratoire de médiévistique occidentale de Paris
subject: Semur-en-Auxois
subject: LaMOP

description: Transcription du manuscrit de Semur-en-Auxois, Bibliothèque Municipale, ms. 1, p. 11

production-software: eScriptorium + Kraken version 3.0.13 (PageXml)
description: Source: https://www.nakala.fr/10.34847/nkl.f9c42bnz
description: Source: https://www.nakala.fr/10.34847/nkl.e905tdea
description: Relation: https://lamop.hypotheses.org/
description: Transcription du manuscrit Semur-en-Auxois, Bibliothèque Municipale, ms. 1
description: Transcription du manuscrit Semur-en-Auxois, Bibliothèque Municipale, ms. 1
Geometrically protected triple-point crossings in an optical lattice
Creators: name: Fulga, I. C.
name: Fallani, L.
name: Burrello, M.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Quantum Gases (cond-mat.quant-gas)
subject: FOS: Physical sciences

description: We show how to realize topologically protected crossings of three energy bands, integer-spin analogs of Weyl fermions, in three-dimensional optical lattices. Our proposal only involves ultracold atom techniques that have already been experimentally demonstrated and leads to isolated triple-point crossings (TPCs) which are required to exist by a novel combination of lattice symmetries. The symmetries also allow for a new type of topological object, the type-II, or tilted, TPC. Our Rapid Communication shows that spin-1 Weyl points, which have not yet been observed in the bandstructure of crystals, are within reach of ultracold atom experiments.
description: 5 pages, 2 figures + 3 pages, 3 figures supplemental material. Added appendix on model symmetries, fixed typos and added references. This is the final, published version
A Toolkit for Constructing Dilations on Banach Spaces
Creators: name: Fackler, Stephan
name: Glück, Jochen
Publisher: name: arXiv
Year: 2017
Subjects: subject: Functional Analysis (math.FA)
subject: FOS: Mathematics
subject: Primary 47A20, Secondary 46B08

description: We present a completely new structure theoretic approach to the dilation theory of linear operators. Our main result is the following theorem: if $X$ is a super-reflexive Banach space and $T$ is contained in the weakly closed convex hull of all invertible isometries on $X$, then $T$ admits a dilation to an invertible isometry on a Banach space $Y$ with the same regularity as $X$. The classical dilation theorems of Sz.-Nagy and Akcoglu-Sucheston are easy consequences of our general theory.
description: 24 pages
Broadband X-ray/UV/optical time-resolved spectroscopy of NGC 5548: The origin of the UV/optical variability in active galactic nuclei
Creators: name: Kammoun, E.
name: Papadakis, I. E.
name: Dovčiak, M.
name: Panagiotou, C.
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Recently, nearby active galactic nuclei (AGN) have been subject to long X-rays/UV/optical monitoring campaigns. These campaigns reveal a strong correlation between the various UV and optical bands, with time lags increasing with wavelength. In a series of papers, we demonstrated that a scenario in which a central X-ray source illuminates the accretion disc explains the observed correlations. However, some of the monitored AGN show low/moderate X-rays-UV correlations, which could challenge this scenario. In this paper, we study the broadband X-ray/UV/optical spectral energy distributions (SEDs) of NGC 5548, one of the most intensively monitored AGN. We aim to test if the X-ray illumination model explains the broadband spectral behaviour of the source, despite the moderate X-ray-UV/optical correlation. We model the broadband time-averaged SED, from the STORM monitoring campaign of the source, using the KYNSED model which assumes an X-ray illuminated disc. We assume that the accretion process powers the X-ray corona. We also model 15 time-resolved SEDs from the same campaign to check whether this scenario can account for the observed spectral variability. The proposed model describes well the time-averaged and the time-resolved SEDs of NGC 5548. In this scenario, the corona height, the X-ray photon index, and the power transferred to the corona all vary. This explains the variability behaviour at different wavelengths. The best-fit model is obtained for a non-rotating black hole accreting at a constant rate of 5% its Eddington limit. Since each of the variable parameters affects the observed flux in a particular way, the combined variability of all parameters explains the moderate X-ray-UV/optical correlation. The X-ray illuminated disc model provides a complete description of the behaviour of NGC 5548, explaining its broadband SEDs, time-lag spectrum, and its power spectral distribution.
description: Accepted for publication in A&A
X-ray emission from the double neutron star binary B1534+12: Powered by the pulsar wind?
Creators: name: Kargaltsev, O.
name: Pavlov, G. G.
name: Garmire, G. P.
Publisher: name: arXiv
Year: 2006
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We report the detection of the double neutron star binary (DNSB) B1534+12 (= J1537+1155) with the Chandra X-ray Observatory. This DNSB (orbital period 10.1 hr) consists of the millisecond (recycled) pulsar J1537+1155A (P_A=37.9 ms) and a neutron star not detected in the radio. After the remarkable double pulsar binary J0737-3039, it is the only other DNSB detected in X-rays. We measured the flux of (2.2\pm 0.6)\times10^{-15} ergs s^{-1} cm^{-2} in the 0.3-6 keV band. The small number of collected counts allows only crude estimates of spectral parameters. The power-law fit yields the photon index of 3.2\pm 0.5 and the unabsorbed 0.2-10 keV luminosity L_X=6\times10^{29} ergs s^{-1} = 3\times 10^{-4}Edot_A, where Edot_A is the spin-down power of J1537+1155A. Alternatively, the spectrum can be fitted by a blackbody model with T = 2.2 MK and the projected emitting area of ~ 5\times 10^3 m^2. The distribution of photon arrival times over binary orbital phase shows a deficit of X-ray emission around apastron, which suggests that the emission is caused by interaction of the relativistic wind from J1537+1155A with its neutron star companion. We also reanalyzed the Chandra and XMM-Newton observations of J0737-3039 and found that its X-ray spectrum is similar to the spectrum of B1534+12, and its X-ray luminosity is about the same fraction of Edot_A, which suggests similar X-ray emission mechanisms. However, the X-ray emission from J0737-3039 does not show orbital phase dependence. This difference can be explained by the smaller eccentricity of J0737-3039 or a smaller misalignment between the equatorial plane of the millisecond pulsar and the orbital plane of the binary.
description: 11 pages, 8 figures, accepted to ApJ
title: ADCO, Boursier de Cîteaux : comptes (1489-1493) (11 H 1166), f. 00510
Creators: name: de la Côte-d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2019
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: comptes
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Boursier de Cîteaux : comptes (1489-1493), Archives départementales de la Côte-d'Or, (11 H 1166). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Boursier de Cîteaux : comptes (1489-1493), Archives départementales de la Côte-d'Or, (11 H 1166), f. 00510, in Projet CBMA - Corpus Burgundiae Medii Aevi \[Ressource en ligne\], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Modern Software Stack Building for HEP
Creators: name: Morgan, Benjamin
name: Stewart, Graeme A
name: Villanueva, Javier Cervantes
name: Hobbs Arthur Willett
Publisher: name: Zenodo
Year: 2019

description: High-Energy Physics has evolved a rich set of software packages that need to work harmoniously to carry out the key software tasks needed by experiments. The problem of consistently building and deploying these software packages as a coherent software stack is one that is shared across the HEP community. To that end the HEP Software Foundation Packaging Working Group has worked to identify common solutions that can be used across experiments, with an emphasis on consistent, reproducible builds and easy deployment into CVMFS or containers via CI systems. We based our approach on well identified use cases and requirements from many experiments. In this paper we summarise the work of the group in the last year and how we have explored various approaches based on package managers from industry and the scientific computing community. We give details about a solution based on the Spack package manager which has been used to build the software required by the SuperNEMO and FCC experiments. We shall discuss changes that needed to be made to Spack to satisfy all our requirements. A layered approach to packaging with Spack, that allows build artefacts to be shared between different experiments, is described. We show how support for a build environment for software developers is provided.
Arrays of strongly-coupled atoms in a one-dimensional waveguide
Creators: name: Ruostekoski, Janne
name: Javanainen, Juha
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: Quantum Gases (cond-mat.quant-gas)
subject: Atomic Physics (physics.atom-ph)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We study the cooperative optical coupling between regularly spaced atoms in a one-dimensional waveguide using decompositions to subradiant and superradiant collective excitation eigenmodes, direct numerical solutions, and analytical transfer-matrix methods. We illustrate how the spectrum of transmitted light through the waveguide including the emergence of narrow Fano resonances can be understood by the resonance features of the eigenmodes. We describe a method based on superradiant and subradiant modes to engineer the optical response of the waveguide and to store light. The stopping of light is obtained by transferring an atomic excitation to a subradiant collective mode with the zero radiative resonance linewidth by controlling the level shift of an atom in the waveguide. Moreover, we obtain an exact analytic solution for the transmitted light through the waveguide for the case of a regular lattice of atoms and provide a simple description how the light transmission may present large resonance shifts when the lattice spacing is close, but not exactly equal, to half of the wavelength of the light. Experimental imperfections such as fluctuations of the positions of the atoms and loss of light from the waveguide are easily quantified in the numerical simulations, which produce the natural result that the optical response of the atomic array tends toward the response of a gas with random atomic positions.
Generic Approach to Certified Static Checking of Module-like Constructs
Creators: name: Belyakova, Julia
Publisher: name: arXiv
Year: 2017
Subjects: subject: Programming Languages (cs.PL)
subject: FOS: Computer and information sciences
subject: D.3.1

description: In this paper we consider the problem of certified static checking of module-like constructs of programming languages. We argue that there are algorithms and properties related to modules that can be defined and proven in an abstract way. We advocate the design of a generic Coq library, which is aimed to provide three building blocks for each checking mechanism: propositional, computable, and correctness proofs. Implemented part of the library is justified by applying it to a certified static checker of an extension of STLC.
Additional file 1 of A two-tiered unsupervised clustering approach for drug repositioning through heterogeneous data integration
Creators: name: Pathima Nusrath Hameed
name: Verspoor, Karin
name: Kusljic, Snezana
name: Halgamuge, Saman
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Computational Biology

description: Silhouette analysis for ATC classification and GSOM clustering. This file includes the figures illustrating the Silhouette values of drugs based on ATC classification and GSOM clustering using chemical, disease, gene, protein and side effect profiles. (PDF 224 kb)
Classical solutions in lattice gauge theories
Creators: name: Mitrjushkin, V. K.
Publisher: name: arXiv
Year: 1996
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: The solutions of the classical equations of motion on a periodic lattice are found which correspond to abelian single and double Dirac sheets. These solutions exist also in non--abelian theories. Possible applications of these solutions to the calculation of gauge dependent and gauge invariant observables are discussed.
description: 13 pages, Latex file including four figures
Integration of custom DAQ Electronics in a SCADA Framework
Creators: name: Cardoso, Luis Granado
name: Gaspar, Clara
name: Joao Vitor Viana Barbosa
name: Alessio, Federico
Publisher: name: Zenodo
Year: 2019

description: LHCb is one of the 4 experiments at the LHC accelerator at CERN. During the upgrade phase of the experiment, several new electronic boards and Front End chips that perform the data acquisition for the experiment will be added by the different sub-detectors. These new devices will be controlled and monitored via a system composed of GigaBit Transceiver (GBT) chips that manage the bi-directional slow control traffic to the Slow Control Adapter(s) (SCA) chips. The SCA chips provide multiple field buses to interface the new electronics devices (I2C, GPIO, etc). These devices will need to be integrated in the Experiment Control System (ECS) that drives LHCb. A set of tools was developed that provide an easy integration of the control and monitoring of the devices in the ECS. A server (GbtServ) provides the low level communication layer with the devices via the several user buses in the SCA chip and exposes an interface for control to the experiment SCADA (WinCC OA), the fwGbt component provides the interface between the SCADA and the GbtServ and the fwHw component, a tool that allows the abstraction of the devices models into the ECS. Using the graphical User Interfaces or XML files describing the structure and registers of the devices it creates the necessary model of the hardware as a data structure in the SCADA. It allows then the control and monitoring of the defined registers using their name, without the need to know the details of the hardware behind. The fwHw tool also provides the facility of defining and applying recipes - named sets of configurations - which can be used to easily configure the hardware according to specific needs.
MOESM2 of Trends in genome-wide and region-specific genetic diversity in the Dutch-Flemish Holsteinâ Friesian breeding program from 1986 to 2015
Creators: name: Doekes, Harmen
name: Veerkamp, Roel
name: Bijma, Piter
name: Hiemstra, Sipke
name: Windig, Jack
Publisher: name: figshare
Year: 2018
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 2: Table S1. Number of QTL extracted from AnimalQTLdb per trait and trait category.
Using behavioral skills training with video modeling to promote social communication skills to young adults with autism spectrum disorder
Creators: name: Yan, Yu
Publisher: name: No Publisher Supplied
Year: 2024

description: Social communication deficits in young adults with autism spectrum disorder (ASD) persist beyond adolescence and pose significant challenges in various life domains. While behavioral skills training (BST) and video modeling (VM) have been shown to have positive effects in children and youth with ASD, there is limited research on evidence-based practices for young adults with ASD. In this study, we investigated the effectiveness of a combined BST and VM intervention for promoting social communication skills in three young adults with ASD. Additionally, we examined the extent of generalization of the acquired skills to novel contexts. The results demonstrated significant improvements in verbal initiation skills for two participants, one of whom also generalized the skills to novel conversation topics. The third participant demonstrated prerequisite verbal initiation during the pre-training test. For reciprocal conversation skill, all three participants demonstrated mastery relatively quickly during training. Two out of three participants maintained the response during the post-training test and one of those participants generalized the response to novel conversation topics. These findings emphasized the immediate positive impact of the combined intervention on social communication outcomes for young adults with ASD and underscored the presence of individual differences in the intervention outcomes.
Additional file 3 of Admixture as a source for HLA variation in Neolithic European farming communities
Creators: name: da Silva, Nicolas Antonio
name: Özer, Onur
name: Haller-Caskie, Magdalena
name: Chen, Yan-Rong
name: Kolbe, Daniel
name: Schade-Lindig, Sabine
name: Wahl, Joachim
name: Berszin, Carola
name: Francken, Michael
name: Görner, Irina
name: Schierhold, Kerstin
name: Pechtl, Joachim
name: Grupe, Gisela
name: Rinne, Christoph
name: Müller, Johannes
name: Lenz, Tobias L.
name: Nebel, Almut
name: Krause-Kyora, Ben
Publisher: name: figshare
Year: 2025
Subjects: Archaeology

description: Additional file 3. Review history
Nonconvex Sparse Logistic Regression with Weakly Convex Regularization
Creators: name: Shen, Xinyue
name: Gu, Yuantao
Publisher: name: arXiv
Year: 2017
Subjects: subject: Machine Learning (cs.LG)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: In this work we propose to fit a sparse logistic regression model by a weakly convex regularized nonconvex optimization problem. The idea is based on the finding that a weakly convex function as an approximation of the $\ell_0$ pseudo norm is able to better induce sparsity than the commonly used $\ell_1$ norm. For a class of weakly convex sparsity inducing functions, we prove the nonconvexity of the corresponding sparse logistic regression problem, and study its local optimality conditions and the choice of the regularization parameter to exclude trivial solutions. Despite the nonconvexity, a method based on proximal gradient descent is used to solve the general weakly convex sparse logistic regression, and its convergence behavior is studied theoretically. Then the general framework is applied to a specific weakly convex function, and a necessary and sufficient local optimality condition is provided. The solution method is instantiated in this case as an iterative firm-shrinkage algorithm, and its effectiveness is demonstrated in numerical experiments by both randomly generated and real datasets.
High-throughput measurement of elastic moduli of microfibers by rope coiling
Creators: name: Liu, Yuan
name: Lo, Jack Hau Yung
name: Nunes, Janine K.
name: Stone, Howard A.
name: Shum, Ho Cheung
Publisher: name: arXiv
Year: 2024
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: There are many fields where it is of interest to measure the elastic moduli of tiny fragile fibers, such as filamentous bacteria, actin filaments, DNA, carbon nanotubes, and functional microfibers. The elastic modulus is typically deduced from a sophisticated tensile test under a microscope, but the throughput is low and limited by the time-consuming and skill-intensive sample loading/unloading. Here, we demonstrate a simple microfluidic method enabling the high-throughput measurement of the elastic moduli of microfibers by rope coiling using a localized compression, where sample loading/unloading are not needed between consecutive measurements. The rope coiling phenomenon occurs spontaneously when a microfiber flows from a small channel into a wide channel. The elastic modulus is determined by measuring either the buckling length or the coiling radius. The throughput of this method, currently 3,300 fibers per hour, is a thousand times higher than that of a tensile tester. We demonstrate the feasibility of the method by testing a nonuniform fiber with axially varying elastic modulus. We also demonstrate its capability for in situ inline measurement in a microfluidic production line. We envisage that high-throughput measurements may facilitate potential applications such as screening or sorting by mechanical properties and real-time control during production of microfibers.
Additional file 1 of Associations Between Lactate Thresholds and 2000 m Rowing Ergometer Performance: Implications for Prediction—A Systematic Review
Creators: name: Kilbey, Timothy
name: Vecchi, Eugenio
name: Salbany, Paulo
name: Handa, Ashok
name: Stride, Eleanor
name: Sheth, Mihir
Publisher: name: figshare
Year: 2025
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Mental Health

description: Additional file 1. Online Resource 1 - Exclusion List.
hls4ml: deploying deep learning on FPGAs for L1 trigger and Data Acquisition
Creators: name: Tran, Nhan Viet
name: Loncar, Vladimir
Publisher: name: Zenodo
Year: 2019

description: Machine learning is becoming ubiquitous across HEP. There is great potential to improve trigger and DAQ performance with it. However, the exploration of such techniques within the field in low latency/power FPGAs has just begun. We present hls4ml, a user-friendly software, based on High-Level Synthesis (HLS), designed to deploy network architectures on FPGAs. As a case study, we use hls4ml for boosted-jet tagging with deep networks at the LHC. We map out resource usage and latency versus network architectures, to identify the typical problem complexity that hls4ml could deal with. We discuss current applications in HEP experiments and future applications. We also report on recent progress in the past year on newer neural network architectures and networks with orders of magnitude more parameters.
A Fast Successive Over-Relaxation Algorithm for Force-Directed Network Graph Drawing
Creators: name: Wang, Yong-Xian
name: Wang, Zheng-Hua
Publisher: name: arXiv
Year: 2017
Subjects: subject: Computational Geometry (cs.CG)
subject: FOS: Computer and information sciences

description: Force-directed approach is one of the most widely used methods in graph drawing research. There are two main problems with the traditional force-directed algorithms. First, there is no mature theory to ensure the convergence of iteration sequence used in the algorithm and further, it is hard to estimate the rate of convergence even if the convergence is satisfied. Second, the running time cost is increased intolerablely in drawing large- scale graphs, and therefore the advantages of the force-directed approach are limited in practice. This paper is focused on these problems and presents a sufficient condition for ensuring the convergence of iterations. We then develop a practical heuristic algorithm for speeding up the iteration in force-directed approach using a successive over-relaxation (SOR) strategy. The results of computational tests on the several benchmark graph datasets used widely in graph drawing research show that our algorithm can dramatically improve the performance of force-directed approach by decreasing both the number of iterations and running time, and is 1.5 times faster than the latter on average.
description: 17 pages, 4 figures, 1 table
(Anti)de Sitter/Poincare symmetries and representations from Poincare/Galilei through a classical deformation approach
Creators: name: Herranz, Francisco J.
name: Santander, Mariano
Publisher: name: arXiv
Year: 2006
Subjects: subject: Mathematical Physics (math-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: A classical deformation procedure, based on universal enveloping algebras, Casimirs and curvatures of symmetrical homogeneous spaces, is applied to several cases of physical relevance. Starting from the (3+1)D Galilei algebra, we describe at the level of representations the process leading to its two physically meaningful deformed neighbours. The Poincare algebra is obtained by introducing a negative curvature in the flat Galilean phase space (or space of worldlines), while keeping a flat spacetime. To be precise, starting from a representation of the Galilei algebra with both Casimirs different from zero, we obtain a representation of the Poincare algebra with both Casimirs necessarily equal to zero. The Poincare angular momentum, Pauli-Lubanski components, position and velocity operators, etc. are expressed in terms of "Galilean" operators through some expressions deforming the proper Galilean ones. Similarly, the Newton-Hooke algebras appear by endowing spacetime with a non-zero curvature, while keeping a flat phase space. The same approach, starting from the (3+1)D Poincare algebra provides representations of the (anti)de Sitter as Poincare deformations.
description: 19 pages, LaTeX.7. Comments and references added
FPGA-accelerated machine learning inference as a service for particle physics computing
Creators: name: Tran, Nhan Viet
name: Pedro, Kevin
Publisher: name: Zenodo
Year: 2019

description: Large-scale particle physics experiments face challenging demands for high-throughput computing resources both now and in the future. New heterogeneous computing paradigms on dedicated hardware with increased parallelization, such as Field Programmable Gate Arrays (FPGAs), offer exciting solutions with large potential gains. The growing applications of machine learning algorithms in particle physics for simulation, reconstruction, and analysis are naturally deployed on such platforms. We demonstrate that the acceleration of machine learning inference as a web service represents a heterogeneous computing solution for particle physics experiments that requires minimal modification to the current computing model. As examples, we retrain the ResNet50 convolutional neural network to demonstrate state-of-the-art performance for top quark jet tagging at the LHC and apply a ResNet50 model with transfer learning for neutrino event classification. Using Microsoft Azure Machine Learning deploying Intel FPGAs to accelerate the ResNet50 image classification model, we achieve average inference times of 60 (10) milliseconds with our experimental physics software framework deployed as a cloud (edge or on-premises) service, representing an improvement by a factor of approximately 30 (175) in model inference latency over traditional CPU inference in current experimental hardware. A single FPGA service accessed by many CPUs achieves a throughput of 600-700 inferences per second using an image batch of one, comparable to large batch-size GPU throughput and significantly better than small batch-size GPU throughput. Deployed as an edge or cloud service for the particle physics computing model, coprocessor accelerators can have a higher duty cycle and are potentially much more cost-effective.
Initial Analysis Protocol of "An ecological momentary assessment of self-reported hunger, craving and stress in British food secure and food insecure populations"
Creators: name: Shannon, Oliver
name: Neal, Courtney
name: Nettle, Daniel
name: Allen, Caroline
name: Pepper, Gillian
Publisher: name: OSF Registries
Year: 2023
Subjects: subject: Public Health
subject: Medicine and Health Sciences
subject: Quantitative Psychology
subject: Social and Behavioral Sciences
subject: Psychology
subject: FOS: Psychology
subject: Craving
subject: EMA
subject: Ecological momentary assessment
subject: Experience sampling
subject: Food Insecurity
subject: Hunger
subject: Perceived Stress
subject: Stress

description: This is an initial, cross-sectional analysis plan of the full study (full protocol previously pre-registered at https://osf.io/zx5bj; follow on from pilot study protocol previously pre-registered at https://osf.io/xntdf). See attached PDF file titled "Hunger EMA First Analysis Pre-reg.pdf".
Additional file 2 of Reversal of ABCB1-related multidrug resistance by ERK5-IN-1
Creators: name: Wang, Fang
name: Li, Delan
name: Zheng, ZongHeng
name: Kin Wah To, Kenneth
name: Chen, Zhen
name: Zhong, Mengjun
name: Su, Xiaodong
name: Chen, Likun
name: Fu, Liwu
Publisher: name: figshare
Year: 2020
Subjects: Biophysics
Biochemistry
Cell Biology
Molecular Biology
Pharmacology
Biotechnology
Chemical Sciences not elsewhere classified
Cancer
Hematology
Virology

description: Additional file 2: Table S1. Effect of ERK5-IN-1 on reversing ABCC1, MRP7 and LRP-mediated drug resistance
Sampling rare fluctuations of discrete-time Markov chains
Creators: name: Whitelam, Stephen
Publisher: name: arXiv
Year: 2017
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We describe a simple method that can be used to sample the rare fluctuations of discrete-time Markov chains. We focus on the case of Markov chains with well-defined steady-state measures, and derive expressions for the large-deviation rate functions (and upper bounds on such functions) for dynamical quantities extensive in the length of the Markov chain. We illustrate the method using a series of simple examples, and use it to study the fluctuations of a lattice-based model of active matter that can undergo motility-induced phase separation.
description: Submitted along with arXiv:1709.03951 as a joint work
Additional file 10: of Identification of novel MITEs (miniature inverted-repeat transposable elements) in Coxiella burnetii: implications for protein and small RNA evolution
Creators: name: Wachter, Shaun
name: Raghavan, Rahul
name: Wachter, Jenny
name: Minnick, Michael
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Evolutionary Biology
subject: Ecology
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Maximum likelihood phylogenetic tree of QMITE2 inserts found in alphaproteobacteria. Node labels are indicated at the corresponding locations, and a branch length legend is shown at the bottom of the figure. (PDF 18 kb)
Follow the path of revolutionary predecessors (走革命前的道路)
Creators: name: Jin Guangyu 金光瑜
name: Wu Yumei 吴玉梅
name: Xiao Feng 肖锋
name: Song Ren 宋韧
Publisher: name: University of Victoria Libraries
Year: 2022
Subjects: Revolutionary Succession

description: Price: 11 fen
Additional file 2 of Associations Between Lactate Thresholds and 2000 m Rowing Ergometer Performance: Implications for Prediction—A Systematic Review
Creators: name: Kilbey, Timothy
name: Vecchi, Eugenio
name: Salbany, Paulo
name: Handa, Ashok
name: Stride, Eleanor
name: Sheth, Mihir
Publisher: name: figshare
Year: 2025
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Mental Health

description: Additional file 2. Online Resource 2 - Data Extraction.
Generalized Binomial States: Ladder Operator Approach
Creators: name: Fu, Hong-Chen
name: Sasaki, Ryu
Publisher: name: arXiv
Year: 1996
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We show that the binomial states (BS) of Stoler {\it et al.} admit the ladder and displacement operator formalism. By generalizing the ladder operator formalism we propose an eigenvalue equation which possesses the number and the squeezed states as its limiting solutions. The explicit forms of the solutions, to be referred to as the {\it generalized binomial states} (GBS), are given. Corresponding to the wide range of the eigenvalue spectrum these GBS have as widely different properties. Their limits to number and {\it squeezed} states are investigated in detail. The time evolution of BS is obtained as a special case of the approach.
description: LaTeX-2e, 11 pages, no figure. Accepted for publication in J.Phys.A:math.Gen
Proyecto C-Boya: Bioensayo de toxicidad del agua.
Creators: name: Noreña-Barroso, Elsa
name: Rodriguez-Fuentes, Gabriela
name: Gómez-Maldonado, María Concepción
Publisher: name: Zenodo
Year: 2023
Subjects: subject: Experiment
subject: experimento
subject: Field experiment
subject: Bioassay and contaminant biological impact
subject: Water Pollutants/toxicity
subject: Water Pollutants, Chemical/toxicity
subject: Water Pollutants, Radioactive/toxicity
subject: Environmental assessment
subject: Toxicological assessment
subject: Ecosystem assessment
subject: Pollutant assessment
subject: Ecological assessment
subject: Impact assessment
subject: Water
subject: Water monitoring
subject: Water pollution
subject: Water (substance)
subject: Evaluation
subject: Evaluation method
subject: Ecotoxicological evaluation
subject: evaluación
subject: genotoxicidad
subject: Genotoxicity
subject: Ecotoxicity
subject: aguas subterráneas
subject: Groundwater
subject: Groundwater chemistry
subject: Groundwater/chemistry
subject: Groundwater/analysis
subject: Groundwater quality
subject: Groundwater pollution
subject: Groundwater protection

description: C-BOYA : Ciencia Ciudadana utilizando el BiOensayo con Allium cepa en Yucatán para la evaluación de la genotoxicidad del Agua subterránea.

Esta publicación se realizó con el financiamiento de PAPIIT
Zero-Field Ambient-Pressure Quantum Criticality in the Stoichiometric Non-Fermi Liquid System CeRhBi
Creators: name: Anand, V. K.
name: Adroja, D. T.
name: Hillier, A. D.
name: Shigetoh, K.
name: Takabatake, T.
name: Park, Je-Geun
name: McEwen, K. A.
name: Pixley, J. H.
name: Si, Q.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: The strange electronic state of a class of materials which violates the predictions of conventional Fermi-liquid theory of metals remains enigmatic. Proximity to a quantum critical point is a possible origin of this non-Fermi liquid (NFL) behavior, which is usually accomplished by tuning the ground state with non-thermal control parameters such as chemical composition, magnetic field or pressure. We present the spin dynamics study of a stoichiometric NFL system CeRhBi, using low-energy inelastic neutron scattering (INS) and muon spin relaxation (muSR) measurements. It shows evidence for an energy-temperature (E/T) scaling in the INS dynamic response and a time-field scaling of the muSR asymmetry function indicating a quantum critical behavior in this compound. The E/T scaling reveals a local character of quantum criticality consistent with the power-law divergence of the magnetic susceptibility, logarithmic divergence of the magnetic heat capacity and T-linear resistivity at low temperature. The NFL behavior and local criticality occur over a very wide dynamical range at zero field and ambient pressure without any tuning in this stoichiometric heavy fermion compound is striking, making CeRhBi an exemplary model system amenable to in-depth studies for quantum criticality.
description: 8 pages, 3 figures
L0TP+: the Upgrade of the NA62 Level-0 Trigger Processor
Creators: name: Lonardo, Alessandro
name: Frezza, Ottorino
name: Soldi, Dario
name: Piandani, Roberto
name: Pontisso, Luca
name: Biagioni, Andrea
name: Cretaro, Paolo
name: Ammendola, Roberto
name: Cicero, Francesca Lo
name: Simula, Francesco
name: Lamanna, Gianluca
name: Vicini, Piero
Publisher: name: Zenodo
Year: 2019

description: The L0TP+ initiative is aimed at the upgrade of the FPGA-based Level-0 Trigger Processor (L0TP) of the NA62 experiment at CERN for the post-LS2 data taking, which is expected to happen at 100% of nominal beam intensity. Although tests performed at the end of 2018 showed a substantial robustness of the L0TP system also at full beam intensity, just hinting at a firmware fix, there are several reasons to motivate such an upgrade: i) avoid FPGA platform obsolescence, ii) make room for improvements in the firmware design leveraging a more capable FPGA device, iii) add new functionalities, iv) support the ✕4 beam intensity increase foreseen in future experiment upgrades. We singled out the Xilinx Virtex UltraScale+ VCU118 development board as the ideal platform for the project. L0TP+ seamless integration in the current NA62 TDAQ system and exact matching of L0TP functionalities represent the main requirements and focus of the project; nevertheless, the final design will include additional features, such as a PCIe RDMA engine to enable processing on CPU and GPU accelerators, and the partial reconfiguration of trigger firmware starting from a high level language description (C/C++). The latter capability is enabled by modern High Level Synthesis (HLS) tools, but to what extent this methodology can be applied to perform complex tasks in the L0 trigger, with its stringent latency requirements and the limits imposed by single FPGA resources, is currently being investigated. Besides, the chosen platform supports the Virtex Ultrascale+ FPGA wide I/O capabilities, allowing for straightforward integration of primitive streams from additional subdetectors in order to improve the efficiency of the trigger. As a test case for this scenario we considered the online reconstruction of the RICH detector rings on a HLS generated module, using a dedicated primitives data stream with PM hits IDs.
Tracer Kinetic Models as Temporal Constraints during DCE-MRI reconstruction
Creators: name: Lingala, Sajan Goud
name: Guo, Yi
name: Lebel, R. Marc
name: Zhu, Yinghua
name: Bliesener, Yannick
name: Law, Meng
name: Nayak, Krishna S.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Medical Physics (physics.med-ph)
subject: FOS: Physical sciences

description: Purpose: To apply tracer kinetic models as temporal constraints during reconstruction of under-sampled dynamic contrast enhanced (DCE) MRI. Methods: A library of concentration v.s time profiles is simulated for a range of physiological kinetic parameters. The library is reduced to a dictionary of temporal bases, where each profile is approximated by a sparse linear combination of the bases. Image reconstruction is formulated as estimation of concentration profiles and sparse model coefficients with a fixed sparsity level. Simulations are performed to evaluate modeling error, and error statistics in kinetic parameter estimation in presence of noise. Retrospective under-sampling experiments are performed on a brain tumor DCE digital reference object (DRO) at different signal to noise levels (SNR=20-40) at (k-t) space under-sampling factor (R=20), and 12 brain tumor in- vivo 3T datasets at (R=20-40). The approach is compared against an existing compressed sensing based temporal finite-difference (tFD) reconstruction approach. Results: Simulations demonstrate that sparsity levels of 2 and 3 model the library profiles from the Patlak and extended Tofts-Kety (ETK) models, respectively. Noise sensitivity analysis showed equivalent kinetic parameter estimation error statistics from noisy concentration profiles, and model approximated profiles. DRO based experiments showed good fidelity in recovery of kinetic maps from 20-fold under- sampled data at SNRs between 10-30. In-vivo experiments demonstrated reduced bias and uncertainty in kinetic mapping with the proposed approach compared to tFD at R>=20. Conclusions: Tracer kinetic models can be applied as temporal constraints during DCE-MRI reconstruction, enabling more accurate reconstruction from under- sampled data. The approach is flexible, can use several kinetic models, and does not require tuning of regularization parameters.
description: Submitted to Medical Physics. 9 figures; 1 table; 32 pages
title: ADCO, Premier cartulaire de l'abbaye de Molesmes (XIIe siècle), Cart. 142 (7 H 6), 128 pages, f. 0018r
Creators: name: de la Côte d'Or, Archives départementales
name: Projet CBMA
name: CG21/F.PETOT/2009
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire

description: Premier cartulaire de l'abbaye de Molesmes (XIIe siècle), Archives départementales de la Côte-d'Or, Cart. 142 (7 H 6), 128 pages, f. 0018r, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Premier cartulaire de l'abbaye de Molesmes (XIIe siècle), Archives départementales de la Côte-d'Or, Cart. 142 (7 H 6), 128 pages, f. 0018r, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Molesme
description: Provenance: http://www.wikidata.org/entity/Q334044
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb137389344