cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1: of The effect of age on vertex-based measures of the grey-white matter tissue contrast in autism spectrum disorder
Creators: name: Mann, Caroline
name: Bletsch, Anke
name: Andrews, Derek
name: Daly, Eileen
name: Murphy, Clodagh
name: Murphy, Declan
name: Ecker, Christine
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Medicine
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 60506 Virology

description: Between-group differences and age-by-group interactions for GWC when including total brain volume (TBV) as a covariate. (A) Clusters with significantly reduced GWC (RFT-based, cluster corrected, p
Gauge theory on G2–manifolds
Creators: name: Walpuski, Thomas
Publisher: name: Imperial College London
Year: 2013

description: In their seminal paper [DT98] Donaldson–Thomas pointed out the possibility of an enumerative invariant for G2–manifolds obtained by counting certain connections, called G2– instantons. This putative invariant is sometimes referred to as the G2 Casson invariant, since it should be formally similar to the Casson invariant for 3–manifolds. In this thesis I prove existence results for G2–instantons on G2–manifolds arising from Joyce’s generalised Kummer construction [Joy96b, Joy00] as well as the twisted connected sum construction [Kov03,CHNP12b]. These yield a number of concrete examples of G2–instantons and may, in the future, help to compute the G2 Casson invariant. Moreover, I show how to construct families of G2–instantons that bubble along associative submanifolds. From this construction it follows that a naïve count of G2–instantons cannot yield a deformation invariant of G2–manifolds. Nevertheless, there can still be hope for a G2 Casson invariant by counting G2–instantons as well as associative submanifolds (and objects in between) with carefully chosen weights. I present a promising proposal for the definition of these weights in the low energy SU(2)–theory.
Extremely large magnetoresistance and the complete determination of the Fermi surface topology in the semimetal ScSb
Creators: name: Hu, Y. J.
name: Aulestia, E. I. Paredes
name: Tse, K. F.
name: Kuo, C. N.
name: Zhu, J. Y.
name: Lue, C. S.
name: Lai, K. T.
name: Goh, Swee K.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We report the magnetoresistance of ScSb, which is a semimetal with a simple rocksalt-type structure. We found that the magnetoresistance reaches $\sim$28000 % at 2 K and 14 T in our best sample, and it exhibits a resistivity plateau at low temperatures. The Shubnikov-de Haas oscillations extracted from the magnetoresistance data allow the full construction of the Fermi surface, including the so-called $α_3$ pocket which has been missing in other closely related monoantimonides, and an additional hole pocket centered at $Γ$. The electron concentration ($n$) and the hole concentration ($p$) are extracted from our analysis, which indicate that ScSb is a nearly compensated semimetal with $n/p\approx0.93$. The calculated band structure indicates the absence of a band inversion, and the large magnetoresistance in ScSb can be attributed to the nearly perfect compensation of electrons and holes, despite the existence of the additional hole pocket.
description: 6 pages, 4 figures
title: Softening Basin Replacement at Ann Arbor Water Treatment Plant
Creators: name: Krishnamurthy, Aparna
name: Knight, Sterling
name: Marx, Robert
Publisher: name: University of Michigan
Year: 2024
Subjects: subject: Public Utilities
subject: Water Treatment
subject: Softening Basins
subject: Engineering

description: The City of Ann Arbor has retained our group to develop a preliminary design and layout of water softening equipment to replace the existing equipment at Plant #1 of the Ann Arbor Drinking Water Treatment Plant (AAWTP). At present, Plant #1 does not meet the City's water quality goals for softened water, nor does it meet Ten State Standards. It is used when daily water demands exceed 25 MGD or when Plant #2 is undergoing maintenance. Our group put together a 30% design proposal with equipment replacement of the current softening basins.
Oral history interview with Rollin D. Barnard, 1967
Publisher: name: Columbia University
Year: 2020
Subjects: Government executives--United States
Postal service--United States
Postal service--Employees

description: Director of Real Estate, United States Post Office Dept., 1953-55; Deputy Assistant Postmaster General, 1955; Assistant Postmaster General, 1959-61
title: ADCO, Ordre cistercien : comptes (1499-1515) (11 H 1162), f. 00296
Creators: name: de la Côte-d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2019
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: comptes

description: Ordre cistercien : comptes (1499-1515), Archives départementales de la Côte-d'Or, (11 H 1162). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Ordre cistercien : comptes (1499-1515), Archives départementales de la Côte-d'Or, (11 H 1162), f. 00296, in Projet CBMA - Corpus Burgundiae Medii Aevi \[Ressource en ligne\], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Ruddlesden-Popper Phases as Solid Oxide Fuel Cell Cathodes: Electrochemical Performance and In Situ Characterisation
Creators: name: Woolley, Russell
Publisher: name: Imperial College London
Year: 2013

description: The aim of this work was to develop oxide fuel cell (SOFC) cathodes made from (LaNiO3)nLaO Ruddlesden-Popper (R-P) phases, and to investigate novel in situ characterisation techniques for SOFC cathodes. Cathodes were developed from La2NiO4+δ (L2N1) and La4Ni3O10-δ (L4N3), R-P phases known to have attractive conductivities at SOFC temperatures. These phases were shown to be chemically stable, both with each other and with the common electrolyte material La0.8Sr0.2Ga0.8Mg0.2O3-δ (LSGM). LSGM-supported symmetrical cells were fabricated with electrodes of single phase L2N1 and L4N3, and a range of L2N1+L4N3 composites. The performance of these was tested from 500 – 700 °C with the composites giving the lowest area-specific resistance (ASR); a 50:50 wt.% L2N1:L4N3 composition being optimal. Functionally graded electrodes were developed consisting of a thin compact L2N1 layer deposited onto the LSGM, topped by a thicker porous L2N1+L4N3 composite layer, completed by a thin porous L4N3 current collector. These gave a lower ASR than the ungraded electrodes. Using a 50:50 composite was optimal with ASRs of 15.59, 2.29, and 0.53 Ωcm2 at 500, 600, and 700 °C respectively; amongst the best-in-class for electrodes made from this type of material. X-ray absorption near-edge spectroscopy was chosen as a method to gain in situ information on the redox chemistry of elements within SOFC materials. Initial studies were carried out on powder samples of L2N1 and L4N3; the nickel oxidation state in these was found to reduce on heating to SOFC operating temperatures. Bespoke equipment was developed to enable such studies to be carried out on symmetrical cells under polarisation and with simultaneous AC impedance spectroscopy. The bulk nickel redox chemistry was correlated with the changing concentration of ionic charge carriers in the materials, and was found to be dominated by thermal effects. These techniques were then used to explore in situ chromium poisoning of state-of-the-art perovskite cathodes. The surface chemistry of SOFC materials is key to performance. Low-energy ion scattering was used to find the composition of the outer monolayer for the entire (LaNiO3)nLaO R-P series; lanthanum termination was found for each phase.
Additional file 2: of The prognostic and predictive value of tumor-infiltrating lymphocytes and hematologic parameters in patients with breast cancer
Creators: name: Lee, Kwan
name: Kim, Eun
name: Yun, Ji
name: Park, Yong
name: Sung-Im Do
name: Chae, Seoung
name: Park, Chan
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Table S1. Univariate and multivariate Cox regression analyses of TILs, LMR, and clinicopathological characteristics for overall survival in patients with breast cancer. (DOCX 21 kb)
title: 02_0562
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
Additional file 4 of lncRNA-PLACT1 sustains activation of NF-κB pathway through a positive feedback loop with IκBα/E2F1 axis in pancreatic cancer
Creators: name: Ren, Xiaofan
name: Chen, Changhao
name: Luo, Yuming
name: Liu, Mingyang
name: Li, Yuting
name: Zheng, Shangyou
name: Ye, Huilin
name: Fu, Zhiqiang
name: Li, Min
name: Li, Zhihua
name: Chen, Rufu
Publisher: name: figshare
Year: 2020
Subjects: Biochemistry
Space Science
Medicine
Molecular Biology
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Information Systems not elsewhere classified
Developmental Biology
Cancer
Science Policy
Computational Biology

description: Additional file 4: Figure S2. PLACT1 is overexpressed in multiple types of human cancers.
Note on soft photons and Faddeev-Jackiw symplectic reduction of quantum electrodynamics in the eikonal limit
Creators: name: Dengiz, Suat
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: In this note, we go over the recent soft photon model and Faddeev-Jackiw quantization of the massless quantum electrodynamics in the eikonal limit to some extent. Throughout our readdressing, we observe that the gauge potentials in both approaches become pure gauges and the associated eikonal Faddeev-Jackiw quantum bracket matches with the soft quantum bracket. These observations and the fact that the gauge fields in two cases localize in two-dimensional plane (even if it is spatial in soft photon case and $1+1$-dimensional Minkowski in the eikonal case) imply that there might be an interesting relation between these two distinct perspectives.
description: 10 pages, 6 figures, a review of some foremost distinct topics in the literature, to appear in the International Journal of Modern Physics A
Valuing and Judging Investments in Electric Vehicle Chargepoints “in the Wild”
Creators: name: Dolmor, Elizabeth
Publisher: name: Lancaster University
Year: 2024

description: The impact of Climate Change has accelerated technological advancements in
 vehicles in an effort to reduce effects. One such technology, is the
 introduction of alternative modes of transport, namely in the shape of the
 Electric Vehicle. A chargepoint is a new piece of technology, needed to
 support the transition to EVs. There are three actors vital to chargepoint
 installation: service providers, service hosts, and service users. These
 three actors will hold different valuation and judgement systems, which
 will influence the success of a chargepoint. This project has investigated
 the valuation and evaluation of chargepoints, namely its value, as a
 service, as a concept, and as an opportunity to fulfil a green agenda.
 These perspectives are particularly influenced by context, and this
 project has been in partnership with a service provider, Charge My Street,
 a community benefit society installing chargepoints in underserved
 locations in Cumbria. Understanding the different valuation and judgement
 systems at play between the three actors is key to understanding the value
 produced at chargepoints, both physically and conceptually. Defining value
 is difficult, as it often relates to contemporary capitalism, this
 research has extended the scope for value beyond the capitalistic
 perspective of ‘worth’. The project has identified the different decision
 tools used by service hosts to install a chargepoint, specifically the
 collision of values including social, environmental, and economic. Tools
 such as visualisations of value, ZapMap, and community creation, could
 improve the success of chargepoint installation for service providers such
 as Charge My Street. Using an autoethnographic perspective, interviews,
 and twelve months immersed in the role as a service provider, has informed
 on the different valuation systems produced by the actors, the impactful
 calculative agencies which inform on decision processes, and how those
 involved perceive the chargepoint and its value.
RESULTS FOR THE B-MESON DECAY CONSTANT FROM THE APE COLLABORATION
Creators: name: Allton, C. R.
name: Crisafulli, M.
name: Lubicz, V.
name: Martinelli, G.
name: Rapuano, F.
name: Salina, G.
name: Vladikas, A.
Publisher: name: arXiv
Year: 1995
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: The decay constant for the B-meson in the static limit is calculated using the Wilson and clover actions at various lattice spacings. We show that both the contamination of our results by excited states and the effects finite lattice spacing are at most the order of the statistical uncertainties. A comparison is made of our results and those obtained in other studies. Values for $f^{stat}_{B_S}/f^{stat}_B$ and $M_{B_S} - M_B$ are also given.
description: Contribution to Lattice'94, 3 pages PostScript, uuencoded compressed
Calculational Verification of Reactive Programs with Reactive Relations and Kleene Algebra
Creators: name: Foster, Simon
name: Ye, Kangfeng
name: Cavalcanti, Ana
name: Woodcock, Jim
Publisher: name: arXiv
Year: 2018
Subjects: subject: Logic in Computer Science (cs.LO)
subject: FOS: Computer and information sciences

description: Reactive programs are ubiquitous in modern applications, and so verification is highly desirable. We present a verification strategy for reactive programs with a large or infinite state space utilising algebraic laws for reactive relations. We define novel operators to characterise interactions and state updates, and an associated equational theory. With this we can calculate a reactive program's denotational semantics, and thereby facilitate automated proof. Of note is our reasoning support for iterative programs with reactive invariants, which is supported by Kleene algebra. We illustrate our strategy by verifying a reactive buffer. Our laws and strategy are mechanised in Isabelle/UTP, which provides soundness guarantees, and practical verification support.
description: 18 pages, accepted for RAMICS 2018
Interactive conversational agents to improve dietary behaviors for health promotion: A Mixed Systematic Review protocol
Creators: name: Desroches, Sophie
name: Sié Mathieu Aymar Romaric Da
name: Drapeau, Vicky
name: Mora, Daniela Zavala
name: Amil, Samira
name: Bédard, Alexandra
name: Gagnon, Marie-Pierre
Publisher: name: OSF Registries
Year: 2023
Subjects: subject: Medicine and Health Sciences
subject: Conversational agents; chatbots; computer; natural language processing; systematic review; dietary behaviors; chronic diseases prevention; health promotion; general population.

description: A Mixed Systematic Review protocol
Additional file 2: of Identifying and understanding the health and social care needs of older adults with multiple chronic conditions and their caregivers: a scoping review
Creators: name: McGilton, Katherine
name: Vellani, Shirin
name: Yeung, Lily
name: Chishtie, Jawad
name: Commisso, Elana
name: Ploeg, Jenny
name: Andrew, Melissa
name: Ayala, Ana
name: Gray, Mikaela
name: Morgan, Debra
name: Chow, Amanda
name: Parrott, Edna
name: Stephens, Doug
name: Hale, Lori
name: Keatings, Margaret
name: Walker, Jennifer
name: Wodchis, Walter
name: DubĂŠ, Veronique
name: McElhaney, Janet
name: Puts, Martine
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Table S2. Quality Assessment using the Mixed Methods Appraisal Tool (MMAT) *. (DOCX 33 kb)
Tunable coupling between a superconducting resonator and an artificial atom
Creators: name: He, Qi-Kai
name: Zhou, D. L.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Coherent manipulation of a quantum system is one of the main themes in current physics researches. In this work, we design a circuit QED system with a tunable coupling between an artificial atom and a superconducting resonator while keeping the cavity frequency and the atomic frequency invariant. By controlling the time dependence of the external magnetic flux, we show that it is possible to tune the interaction from the extremely weak coupling regime to the ultrastrong coupling one. Using the quantum perturbation theory, we obtain the coupling strength as a function of the external magnetic flux. In order to show its reliability in the fields of quantum simulation and quantum computing, we study its sensitivity to noises.
Framing the interplay mechanisms between structural and dynamic complexity in supply chains
Creators: name: Campos, Pablo Fernández
name: Huatuco, Luisa Huaccho
name: Trucco, Paolo
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Biophysics
subject: Genetics
subject: FOS: Biological sciences
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: This paper explores the interplay between structural and dynamic complexity factors, uncovering the mechanisms that underpin it. Four in-depth inductive case studies, which comprised semi-structured interviews with senior operations and SC managers as well as the use of companies’ official documents and other secondary data, were carried out. The study offers a deep understanding and provides rich empirical descriptions of the interplay between structural and dynamic complexity factors. A general framework to represent different aspects of this interplay is also introduced, i.e. the House of Supply Chain Complexity diagram; as a practical tool for mapping the complexity factors and inferring the prevailing interplay mechanisms in specific cases. The results show four interplay mechanisms between structural and dynamic complexity factors: silo-thinking, localism, limited adaptability and increased uncertainty. Testable propositions are presented with relevant insights on the interplay between a wide range of structural and dynamic complexity factors. Research implications relate to: (i) a general framework usable to further investigate interplay mechanisms at factors level and in different SC contexts and (ii) theory building on the suggested interplay mechanisms. We contribute to enhance contingency research claiming for the importance of considering the cumulative effect of contingency factors on SC performance. The results also suggest that managers can accommodate the mechanisms of silo-thinking and increased uncertainty by information sharing and organizational means, but the interplay mechanisms of localism and limited adaptability appear to be more related to the physical structure of SC elements and thus mainly manageable by reducing complexity, i.e. reducing the factors involved in the interplay.
Vacuum Fluctuations and Boundary Conditions in a Global Monopole
Creators: name: Barroso, V. S.
name: Pitelli, J. P. M.
Publisher: name: arXiv
Year: 2018
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We study the vacuum fluctuations of a massless scalar field $\hatΨ$ on the background of a global monopole. Due to the nontrivial topology of the global monopole spacetime, characterized by a solid deficit angle parametrized by $η^2$, we expect that $\left_{\text{ren}}$ and $\left_{\text{ren}}$ are nonzero and proportional to $η^2$, so that they annul in the Minkowski limit $η\to0$. However, due to the naked singularity at the monopole core, the evolution of the scalar field is not unique. In fact, they are in one to one correspondence with the boundary conditions which turn into self-adjoint the spatial part of the wave operator. We show that only Dirichlet boundary condition corresponds to our expectations and gives zero contribution to the vacuum fluctuations in Minkowski limit. All other boundary conditions give nonzero contributions in this limit due to the nontrivial interaction between the field and the singularity.
description: 7 pages, submitted to PRD
Duffin-Kemmer-Petiau Theory in the Causal Approach
Creators: name: Lunardi, J. T.
name: Manzoni, L. A.
name: Pimentel, B. M.
name: Valverde, J. S.
Publisher: name: arXiv
Year: 2000
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In this paper we consider the scalar sector of Duffin-Kemmer-Petiau theory in the framework of Epstein-Glaser causal method. We calculate the lowest order distributions for Compton scattering, vacuum polarization, self-energy and vertex corrections. By requiring gauge invariance of the theory we recover, in a natural way, the scalar propagator of the usual effective theory.
description: 35 pages, no figures, enlarged version
The social organization of errors and the manifestation of rework: learning from narratives of practice
Creators: name: Love, Peter E. D.
name: Matthews, Jane
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Environmental Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Despite the considerable amount of research that has examined rework causation in construction, it remains an inherent problem that can potentially result in adverse project outcomes. This situation has arisen as studies have tended to ignore the social organization of errors (i.e. the pattern of relationships and social interactions between and among individuals and teams). Instead, studies have adopted a ‘reductionist view’ of rework causation by identifying its proximal and root causes rather than addressing the conditions resulting in its manifestation. This paper uses a case study approach with a sense-making lens to create a series of narratives of rework events that arose while constructing a transport mega-project. By making sense of the context surrounding the error events, it is revealed rework manifests from failures in ‘negotiated order’ which stems from role ambiguity, misunderstandings, misinterpretations, and break-downs in communications and interactions between people and organizations. As a consequence of these findings, their theoretical and practical implications arising from the research are discussed.
HTLV-1 clonality in natural infection
Creators: name: Melamed, Anat
Publisher: name: Imperial College London
Year: 2013

description: Human T-Lymphotropic virus type 1 (HTLV-1) maintains persistent infection in the host by driving expansion of HTLV-1-infected T cells. However, the wide variation observed in clonal abundance in vivo remains unexplained. We hypothesize that the site of proviral integration in the host cell genome determines the rate of expression of HTLV-1 genes such as the viral transactivator Tax, which in turn determine the level of clonal expansion in vivo. Utilising Molecular biology techniques, High-throughput sequencing and computing tools, we have developed a high-throughput method for the amplification, mapping and quantification of proviral integration sites. We have used this technique, in combination with bioinformatics analysis, to identify factors associated with clonal expansion. Using PBMCs sorted for CD4+ and CD8+ T cell subsets, we observed differences in the form of the clonal distribution between the cell types. In addition, using flow-cytometric sorting of Tax expressing CD4+ cells, we identified genomic patterns associated with the presence or absence of spontaneous Tax expression. We have also identified a correlation between the expression of Tax and the size of the infected clones. Finally, we identified genomic factors associated with HTLV-1 integration in vitro, suggesting a possible role of these factors in targeting of the pre-integration complex to particular sites in the host genome. The thesis will detail and discuss the findings from these analyses, as well as their impact on the current knowledge. These results would play a role in improving our understanding of HTLV-1 persistence in the face of a strong immune response, and may provide excellent basis from a population level to test mechanisms of proviral latency in natural infection.
The Large Scale Biasing and the Primordial Gravitational Potential
Creators: name: Lee, Jounghun
name: Shandarin, Sergei F.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We modified the Press-Schechter (PS) formalism and then analytically derived a constrained mass distribution function n(M|varphi) for the regions having some specified value of the primordial gravitational potential, varphi. The resulting modified PS theory predicts that gravitationally bound clumps with masses corresponding to rich clusters are significantly biased toward the regions of negative primordial potential - the troughs of the potential. The prediction is quantitative, depending on the mass and the depth of the troughs, which can be tested in large N-body simulations. As an illustration of the magnitude of the effect we calculate the constrained mass function for the CDM model with Gamma = Omega h = 0.25 normalized to sigma_{8} = 1. In particular, we show that the probability of finding a clump of mass 10^{14} - 10^{15}h^{-1}M_{odot} in the region of negative initial potential is 1.3 - 3 times greater (depending on the mass) than that in the region of positiveinitial potential. The scale of the potential fluctuations R_{varphi}=sqrt{3} sigma_{varphi}/sigma_{varphi'} is shown to be approx 120 h^{-1} Mpc for the spectrum in question. The rms mass density contrast on this scale is only about sigma_{delta}(R_{varphi}) approx 0.03. Assuming that the modified PS theory is statistically correct, we conclude that clusters are significantly biased (b ge 10, b is a bias factor defined by Delta n_{cl}/ n_{cl} = b Delta rho_m/rho_m) toward the regions having negative initial potential.
description: Latex file,15 pages,2 postscript figures, accepted by ApJ Letter
Additional file 3: of Chromosome rearrangements shape the diversification of secondary metabolism in the cyclosporin producing fungus Tolypocladium inflatum
Creators: name: Olarte, Rodrigo
name: Menke, Jon
name: Zhang, Ying
name: Sullivan, Shawn
name: Slot, Jason
name: Huang, Yinyin
name: Badalamenti, Jonathan
name: Quandt, Alisha
name: Spatafora, Joseph
name: Bushley, Kathryn
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Marine Biology
subject: Plant Biology
subject: Computational Biology

description: Figure S2. Hi-C plot mapping NRRL8044 Hi-C data to the NRRL8044 assembly supports assembly of two unitigs to form chromosome 6. (PDF 499 kb)
Molecular vibrations and chemical reactivity in complex environments
Creators: name: Thompson, Lee Michael
Publisher: name: Imperial College London
Year: 2013

description: In this thesis the hybrid method ONIOM is applied to computing the reaction pathways and vibrational modes of molecules embedded within complex environments. ONIOM combines different levels of theory in order to treat the most chemically important regions of the molecule at a sufficiently high level of theory, while simultaneously including the steric and electronic effects of the remainder of the molecule such that the calculation remains affordable. Normal mode analysis also allows characterisation of critical points located on the Potential Energy Surface (PES). While the ONIOM PES is well defined for a given combination of theories, this does not ensure that the PESs for each individual level of theory are qualitatively the same. In cases where they differ this may cause the curvature of the ONIOM PES to be sensitive to method combinations and ONIOM partitioning. We present a method for analysing the ONIOM Hessian to indicate where such situations occur. The ONIOM method is then applied to computing vibrational modes of the Green Fluorescent Protein (GFP). This enhances interpretation of spectra obtained from time-resolved femtosecond spectroscopy. ONIOM(QM:MM) reduces the cost associated with assembly of the Hessian matrix and reformulation of the CPHF equations enables inclusion of the environment electronic effect in the normal mode analysis. This has been used to understand how chromophore vibrational modes are modified through covalent and hydrogen bonding, transition dipole coupling, accidental degeneracy and the vibrational Stark effect. In the final application, ONIOM(CAS:MM) models how the protein environment of the Photoactive Yellow Protein (PYP) modifies reaction pathways. The protein enhances trans-cis isomerization compared to vacuum. ONIOM allows separate analysis of the steric and electronic roles of the protein environment and reveals that the steric effect disfavoured the gas-phase pathway while the electronic environment allows the alternative pathway to directly access the intersection crossing seam.
Peeping into the SU(2) Gauge Vacuum
Creators: name: Gonzalez-Arroyo, A.
name: Martinez, P.
Publisher: name: arXiv
Year: 1995
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: We study thermalised configurations of SU(2) gauge fields by cooling. An analysis of the effect of cooling is presented and global and statistical information is extracted.
description: 3 pages, uuencoded compressed postscript file, contribution to LAT 94
Additional file 1: of Identifying and understanding the health and social care needs of older adults with multiple chronic conditions and their caregivers: a scoping review
Creators: name: McGilton, Katherine
name: Vellani, Shirin
name: Yeung, Lily
name: Chishtie, Jawad
name: Commisso, Elana
name: Ploeg, Jenny
name: Andrew, Melissa
name: Ayala, Ana
name: Gray, Mikaela
name: Morgan, Debra
name: Chow, Amanda
name: Parrott, Edna
name: Stephens, Doug
name: Hale, Lori
name: Keatings, Margaret
name: Walker, Jennifer
name: Wodchis, Walter
name: DubĂŠ, Veronique
name: McElhaney, Janet
name: Puts, Martine
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Table S1. Medline Search. (DOCX 38 kb)
Stückelberg Field Shiftting Quantization of Free-Particle on D-Dimensional Sphere
Creators: name: Neves, C.
name: Wotzasek, C.
Publisher: name: arXiv
Year: 2000
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In this paper we quantize the free-particle on a D-dimensional sphere in an unambiguous way by converting the second-class constraint using Stückelberg field shiftting formalism. Further, we argument that this formalism is equivalent to the BFFT constraint conversion method and show that the energy spectrum is identical to the pure Laplace-Beltrami operator without additional terms arising from the curvature of the sphere. We work out the gauge symmetry generators with results consistent with those obtained through the nonlinear implementation of the gauge symmetry
description: 6 pages, Revtex, twocolumns, to appear at J. Phys. A
Layered Ruddlesden-Popper Lan+1NinO3n+1 (n = 1, 2 and 3) epitaxial films grown by pulsed laser deposition for potential fuel cell applications
Creators: name: Wu, Kuan-Ting
Publisher: name: Imperial College London
Year: 2014

description: Layered Ruddlesden-Popper (RP) type La_n+1Ni_nO_{3n+1} (n = 1, 2 and 3) oxides have recently been suggested as candidates for solid oxide fuel cell (SOFC) cathodes. However, the transport properties of the higher order (n = 2 and 3) phases have not been well-understood. The aim of this work is to achieve well-defined epitaxial La_3Ni_2O_{7-δ} and La_4Ni_3O_{10-δ} films deposited by the pulsed laser deposition (PLD) technique in order to fundamentally investigate their intrinsic anisotropic properties for SOFC applications. This research involved PLD target synthesis and PLD deposition for these RP materials. The obtained films were evaluated through crystallographic, compositional, surface morphological and microstructural characterisation. Their electrical, oxygen diffusion and surface exchange properties were characterised by 4-point DC van der Pauw and the isotopic exchange depth profile (IEDP) with secondary ion mass spectrometry (SIMS) method. Finally, the surface and interface information were also obtained via SIMS and low energy ion scattering (LEIS) techniques. An effect of target degradation during deposition was found to have significant influence on the microstructural and compositional variation with increasing film thickness. Successful epitaxial growth of the higher order phases (n = 2 and 3) of lanthanum nickelate have been demonstrated by PLD for the first time. The total planar electrical conductivity of these higher order RP epitaxial films exhibits a more promising conductivity value than La_2NiO_{4+δ}. These dense higher order RP epitaxial films enabled the first information about the oxygen diffusion and surface exchange properties along the c-axis to be obtained. Also, an outermost surface structure of LaO-termination, followed by a Ni-enrichment in the sub-surface region for these RP materials was found by LEIS analysis. These studies provide useful information to help the further development of these materials and related RP-phases for the potential SOFC applications in the future.
Inverse scattering on the half line for the matrix Schrödinger equation
Creators: name: Aktosun, Tuncay
name: Weder, Ricardo
Publisher: name: arXiv
Year: 2018
Subjects: subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences
subject: 34L25 34L40 81U05 81Uxx

description: The matrix Schrödinger equation is considered on the half line with the general selfadjoint boundary condition at the origin described by two boundary matrices satisfying certain appropriate conditions. It is assumed that the matrix potential is integrable, is selfadjoint, and has a finite first moment. The corresponding scattering data set is constructed, and such scattering data sets are characterized by providing a set of necessary and sufficient conditions assuring the existence and uniqueness of the one-to-one correspondence between the scattering data set and the input data set containing the potential and boundary matrices. The work presented here provides a generalization of the classic result by Agranovich and Marchenko from the Dirichlet boundary condition to the general selfadjoint boundary condition.
description: arXiv admin note: substantial text overlap with arXiv:1708.03837. This paper contains a summary of the results of arXiv:1708.03837 and also new results. It will be published in Journal of Mathematical Physics, Analysis, Geometry. This version has been edited
Convergent measure of focal extent, and largest peak intensity for non-paraxial beams
Creators: name: Andrejić, Petar
Publisher: name: arXiv
Year: 2018
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: Second moment beam widths are commonly used in paraxial optics to define the focal extent of beams. However, second moments of arbitrary beams are not guaranteed to be finite. I propose the focal concentration area as a measure of beam focal area, defined to be the ratio of total radial intensity to radial intensity regulated by a unit area Gaussian distribution. I use the Dirac delta limit of this distribution to establish a rigorous upper bound on the peak intensity of non-paraxial beams of a given total intensity, and show that this is achieved by the recently proposed `proto- beam' solution. I discuss the generalisation to electromagnetic beams, and find the same lower bound as the scalar case. This bound cannot be achieved for any physical beam, and as such the physical lower bound must be higher.
description: 23 pages, 9 figures
A complete sample of GHz-Peaked-Spectrum radio sources and its radio properties
Creators: name: Stanghellini, C.
name: O'Dea, C. P.
name: Dallacasa, D.
name: Baum, S. A.
name: Fanti, R.
name: Fanti, C.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We define a complete sample of thirty-three GHz-Peaked-Spectrum (GPS) radio sources based on their spectral properties. We present measurements of the radio spectra and polarization of the complete sample and a list of additional GPS sources which fail one or more criteria to be included in the complete sample. The majority of the data have been obtained from quasi-simultaneous multi-frequency observations at the Very Large Array (VLA) during 3 observing sessions. Low frequency data from the Westerbork Synthesis Radio Telescope (WSRT) and from the literature have been combined with the VLA data in order to better define the spectral shape. The objects presented here show a rather wide range of spectral indices at high and low frequencies, including a few cases where the spectral index below the turnover is close to the theoretical value of 2.5 typical of self-absorbed incoherent synchrotron emission. Faint and diffuse extended emission is found in about 10% of the sources. In the majority of the GPS sources, the fractional polarization is found to be very low, consistent with the residual instrumental polarization of 0.3%.
description: 23 pages, 16 figures, uses psfig.sty, A&AS in press
MOESM1 of The relationship between the abundance of the Nigeria-Cameroon chimpanzee (Pan troglodytes ellioti) and its habitat: a conservation concern in Mbam-Djerem National Park, Cameroon
Creators: name: Kamgang, Serge
name: Kadiri Bobo
name: Maisels, Fiona
name: Ruffin Ambahe
name: DĂŠsirĂŠ Ambassa Ongono
name: Gonder, Mary
name: Johnson, Paul
name: Jorgelina Marino
name: Sinsin, Brice
Publisher: name: figshare
Year: 2018
Subjects: subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Science Policy

description: Additional file 1. Description of the habitat types. Description was made base on [50] p. 135.
Pulex irritans Linnaeus, 1758, spec. nov.
Creators: name: Linnaeus, Carolus
Publisher: name: Laurentius Salvius
Year: 1758
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Siphonaptera
Pulicidae
Pulex
Pulex irritans

description: Pulex irritans [spec. nov.]
P. proboscide corpore breviore.
Habitat ubique in Europa, Leporibus imprimis molesta; in America. Kalm.
La va apoda, cauda bifurca, net. Pupa pedata, immobilis. Mas sub femina jungitur, affinis coleoptratis.
description: Published as part of Linnaeus, Carolus, 1758, Systema Naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Stockholm :Laurentius Salvius on page 614, DOI: 10.5962/bhl.title.542, http://zenodo.org/record/3922206
MOESM8 of An expanded global inventory of allelic variation in the most extremely polymorphic region of Plasmodium falciparum merozoite surface protein 1 provided by short read sequence data
Creators: name: Aspeling-Jones, Harvey
name: Conway, David
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Additional file 8. Distribution of coverage by allelic type after alignment of dummy reads to reference library.
Smartphone scene generator for efficient characterization of visible imaging detectors
Creators: name: Bottom, Michael
name: Neat, Leo S.
name: Harding, Leon K.
name: Morrissey, Patrick
name: Meeker, Seth R.
name: Demers, Richard T.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Instrumentation and Detectors (physics.ins-det)
subject: FOS: Physical sciences

description: Full characterization of imaging detectors involves subjecting them to spatially and temporally varying illumination patterns over a large dynamic range. Here we present a scene generator that fulfills many of these functions. Based on a modern smartphone, it has a number of good features, including the ability to generate nearly arbitrary optical scenes, high spatial resolution (13 um), high dynamic range (~10^4), near-Poisson limited illumination stability over time periods from 100 ms to many days, and no background noise. The system does not require any moving parts and may be constructed at modest cost. We present the optical, mechanical, and software design, test data validating the performance, and application examples.
description: 14 pages. This version includes code, available here: https://github.com/Leo-Neat
Lattice Charge Overlap I: Elastic Limit of Pi and Rho Mesons
Creators: name: Andersen, William
name: Wilcox, Walter
Publisher: name: arXiv
Year: 1995
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: Using lattice QCD on a $16^{3}\times 24$ lattice at $β=6.0$, we examine the elastic limit of charge overlap functions in the quenched approximation for the pion and rho meson; results are compared to previous direct current insertion calculations. A good signal is seen for the pion, but the electric and magnetic rho meson results are considerably noisier. We find that the pion and rho results are characterized by a monopole mass to rho mass ratio of $0.97(8)$ and $0.73(10)$, respectively. Assuming the functional form of the electric and magnetic form factors are the same, we also find a rho meson g-factor of $g=2.25(34)$, consistent with the nonrelativistic quark model.
description: 19 pages a uuencoded, compressed file (LateX). Uses more configurations and computes correlated chi-squareds on fits. Figures still w/o labels
The Dynamics of a Bushmeat Hunting System under Social, Economic and Environmental Change
Creators: name: McNamara, James
Publisher: name: Imperial College London
Year: 2013

description: The trade in bushmeat for human consumption is an important source of income and food for many people in tropical Africa. Yet it also represents one of the most significant threats to the persistence of wildlife. This threat has been exacerbated in recent decades as the trade has become increasingly commercial in nature, and previously pristine habitats have been degraded due to agriculture and extractive industries. These agricultural, production landscapes are increasingly the face of rural Africa, particularly West Africa. Understanding how economic and landscape-level pressures influence hunting behaviour in these production landscapes will be critical to developing effective management policies that are able to address both development and conservation agendas. This study uses a unique 26-year dataset, collected in the Atwemonom market in Kumasi, Ghana, to examine the spatio-temporal dynamics of the bushmeat trade in the region. A multidisciplinary, multi-scale approach is adopted to present a holistic overview of the trade. Four analyses are presented. Firstly, a framework is developed to assess the degree to which the trade is driven by the demands of the consumer, or the behaviour of the hunter. Secondly, an econometric supply and demand model based on available market data is tested and implemented to analyse the drivers of supply and demand in the commercial system. Thirdly, a spatial model is designed to explore how the biophysical characteristics of the landscape influence what is harvested, from where it is harvested and how this has changed over time. Finally, the findings of these three approaches are used to inform a scenario analysis that explores the socioeconomic factors determining a hunter’s willingness to adapt their behaviour in light of changing incentives to participate. The findings highlight the importance of the production landscape for supporting the bushmeat trade in the region and present evidence that suggests the trade around Kumasi may be defined more by drivers of supply (hunter behaviour) than demand (consumer preference). This raises concerns about the effectiveness of demand side management. The results emphasise the need for integrated approaches to bushmeat management that consider the full range of social, economic and environmental drivers.