cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Effect of L21 and XA ordering on phase stability, half-metallicity and magnetism of Co2FeAl Heusler Alloy: GGA and GGA+U approach
Creators: name: Ahmad, Aquil
name: Srivastava, S. K.
name: Das, A. K.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: The generalized gradient approximation (GGA) scheme in the first-principles calculations are used to study the effect of L21 and XA ordering on the phase stability, half-metallicity and magnetism of Co2FeAl (CFA) Heusler alloy. Various possible hypothetical structures: L21-I, L21-II, XA-I, and XA-II were prepared under the conventional L21 and inverse XA phases by altering the atomic occupancies at their Wyckoff sites. It is found that the XA-II phase of CFA is the most stable phase energetically among all the structures. The electronic structure calculations without U show the presence of half-metallic (HM) ground state only in L21-1 structure and the other structures are found to be metallic. However, the electronic structures of CFA are significantly modified in the presence of U, although the total magnetic moments per cell remained the same and consistent with the Slater-Pauling (SP) rule. The metallic ground states of CFA in L21-II and XA-II structures are converted into the half-metallic ground states in presence of U but remained the same (metallic) in XA-I structure. The results indicate that the electronic structures are not only dependent on the L21 and XA ordering of the atoms but also depend on the choice of U values. So experiments may only verify the superiority of GGA+U to GGA.
description: 21 pages, 8 figures, 4 tables, Accepted for publication in JMMM 23 July, 2019
Antimycobacterial Rufomycin Analogues from Streptomyces atratus Strain MJM3502
Creators: name: Zhou, Bin
name: Shetye, Gauri
name: Yu, Yang
name: Santarsiero, Bernard D
name: Klein, Larry
name: Abad-Zapatero, Celerino
name: Wolf, Nina M
name: Cheng, Jinhua
name: Jin, Yingyu
name: Lee, Hanki
name: Suh, Joo-Won
name: Lee, Hyun
name: Bisson, Jonathan
name: McAlpine, James B
name: Chen, Shaonong
name: Cho, Sang Hyun
name: Franzblau, Scott
name: Pauli, Guido
Publisher: name: University of Illinois at Chicago
Year: 2022

description: This study represents a systematic chemical and biological study of the rufomycin (RUF) class of cyclic heptapeptides, which our anti-TB drug discovery efforts have identified as potentially promising anti-TB agents that newly target the caseinolytic protein C1, ClpC1. Eight new RUF analogues, rufomycins NBZ1-NBZ8 (1-8), as well as five known peptides (9-13) were isolated and characterized from the Streptomyces atratus strain MJM3502. Advanced Marfey's and X-ray crystallographic analysis led to the assignment of the absolute configuration of the RUFs. Several isolates exhibited potent activity against both pathogens M. tuberculosis H37Rv and M. abscessus, paired with favorable selectivity (selectivity index >60), which collectively underscores the promise of the rufomycins as potential anti-TB drug leads.
Additional file 5: of Combination therapy targeting both innate and adaptive immunity improves survival in a pre-clinical model of ovarian cancer
Creators: name: Hartl, Christina
name: Bertschi, Adrian
name: Puerto, Regina
name: Andresen, Carolin
name: Cheney, Emily
name: Mittendorf, Elizabeth
name: Guerriero, Jennifer
name: Goldberg, Michael
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Plant Biology
subject: FOS: Biological sciences

description: Figure S5. Galectin3 is upregulated after chemotherapy treatment. Mice were treated with vehicle (Veh) or chemotherapy (Chemo) 8 days after ID8-Vegf-Defb29 tumor inoculation and peritoneal cells were assessed by flow cytometry 4 days after initiation of treatment. Histograms of Gal3+ expression on CD11b+ myeloid cells are shown and the mean fluorescence intensity was quantified on the right. Experiment was performed twice with n = 5 biological replicates. Statistics were calculated using a two-sided unpaired t-test. Data are presented as mean ± SEM ** p ≤ 0.01 (PDF 97 kb)
Hybrid LSTM and Encoder-Decoder Architecture for Detection of Image Forgeries
Creators: name: Bappy, Jawadul H.
name: Simons, Cody
name: Nataraj, Lakshmanan
name: Manjunath, B. S.
name: Roy-Chowdhury, Amit K.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: With advanced image journaling tools, one can easily alter the semantic meaning of an image by exploiting certain manipulation techniques such as copy-clone, object splicing, and removal, which mislead the viewers. In contrast, the identification of these manipulations becomes a very challenging task as manipulated regions are not visually apparent. This paper proposes a high-confidence manipulation localization architecture which utilizes resampling features, Long-Short Term Memory (LSTM) cells, and encoder-decoder network to segment out manipulated regions from non-manipulated ones. Resampling features are used to capture artifacts like JPEG quality loss, upsampling, downsampling, rotation, and shearing. The proposed network exploits larger receptive fields (spatial maps) and frequency domain correlation to analyze the discriminative characteristics between manipulated and non-manipulated regions by incorporating encoder and LSTM network. Finally, decoder network learns the mapping from low-resolution feature maps to pixel-wise predictions for image tamper localization. With predicted mask provided by final layer (softmax) of the proposed architecture, end-to-end training is performed to learn the network parameters through back-propagation using ground-truth masks. Furthermore, a large image splicing dataset is introduced to guide the training process. The proposed method is capable of localizing image manipulations at pixel level with high precision, which is demonstrated through rigorous experimentation on three diverse datasets.
Cephalocassis borneensis
Creators: name: Alexandre P. Marceniuk
name: Naércio A. Menezes
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Ariidae
Cephalocassis
Cephalocassis borneensis

description: Cephalocassis borneensis (Bleeker, 1851)
Pimelodus borneensis Bleeker, 1851: 430. Type locality: Sambas, western Borneo, Indonesia. Holotype: RMNH 6906.
Hemipimelodus macrocephalus Bleeker, 1858: 239. Type locality: Bandjarmasin, Borneo, Indonesia. Syntypes: BMNH 1863.12.4.116, RMNH 27618.
Hemipimelodus siamensis Sauvage, 1878: 234. Type locality: Laos. Holotype: MNHN 9649.
? Hemipimelodus intermedius Vinciguerra, 1881: 178. Type locality: Sarawak state, Borneo, East Malaysia. Syntypes: MSNG 14529.
Distribution: South and southeast Asia.
Countries: Thailand, Malaysia, Cambodia, Laos, Vietnam and Indonesia.
Habitat: Freshwaters.
Maximum size: 250 mm TL.
Material examined: ANSP 87374 (2 al, 130-144 mm TL) (1 c&s), Thailand, Bangkok, Siam; UMMZ 181201 (4 al, 165-186 mm TL) (1 c&s), Cambodia, Mekong River, 15 km north of Phnom Penh.
description: Published as part of Alexandre P. Marceniuk & Naércio A. Menezes, 2007, Systematics of the family Ariidae (Ostariophysi, Siluriformes), with a redefinition of the genera., pp. 1-126 in Zootaxa 1416 on page 49
Superconducting magnesium diboride films on Silicon with Tc0 about 24K grown via vacuum annealing from stoichiometric precursors
Creators: name: Zhai, H. Y.
name: Christen, H. M.
name: Zhang, L.
name: Cantoni, C.
name: Paranthaman, M.
name: Sales, B. C.
name: Christen, D. K.
name: Lowndes, D. H.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Superconducting magnesium diboride films with Tc0 ~ 24 K and sharp transition \~ 1 K were successfully prepared on silicon substrates by pulsed laser deposition from a stoichiometric MgB2 target. Contrary to previous reports, anneals at 630 degree and a background of 2x10^(-4) torr Ar/4%H2 were performed without the requirement of Mg vapor or an Mg cap layer. This integration of superconducting MgB2 films on silicon may thus prove enabling in superconductor-semiconductor device applications. Images of surface morphology and cross-section profiles by scanning electron microscopy (SEM) show that the films have a uniform surface morphology and thickness. Energy dispersive spectroscopy (EDS) reveals these films were contaminated with oxygen, originating either from the growth environment or from sample exposure to air. The oxygen contamination may account for the low Tc for those in-situ annealed films, while the use of Si as the substrate does not result in a decrease in Tc as compared to other substrates.
description: 5 pages, 4 figures, 15 references; due to file size limit, images were blured
Fringillaria socotrana Ogilvie-Grant and Forbes
Creators: name: LeCroy, Mary
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Aves
Passeriformes
Emberizidae
Fringillaria
Fringillaria socotrana

description: Fringillaria socotrana Ogilvie-Grant and Forbes
 Fringillaria socotrana Ogilvie-Grant and Forbes, 1899:2 (3500–4500 feet, Adho Dimellus, Socotra).
 Now Emberiza socotrana (Ogilvie-Grant and Forbes, 1899). See Dickinson, 2003: 778, Fry and Keith, 2004: 580–581.
 SYNTYPE: AMNH 716975, adult male, collected at Adho Dimello (5 Adho Dimellus), 3500 ft, 12.33N, 54.03E (G. Kirwan, personal commun.), Socotra, Yemen, on 10 February 1899, on the joint Liverpool Museum and British Museum expedition to Socotra. From the Rothschild Collection.
 COMMENTS: In the original description, characters were given for both male and female, but no type was designated and the number of specimens was not indicated. Warren and Harrison (1971: 516) noted that a male and a female syntype were present in BMNH, the male syntype collected on 6 February 1899. Ogilvie-Grant and Forbes (1903: 32–33), reporting more fully on the expedition, listed five specimens of socotrana collected on the expedition. The male collected on 10 February 1899 is the syntype listed above and is the single specimen in AMNH from the expedition. It had not previously been recognized as a syntype. The species is illustrated in Ogilvie-Grant and Forbes (1903: pl. 3, fig. 1).
description: Published as part of LeCroy, Mary, 2012, Type Specimens Of Birds In The American Museum Of Natural History Part 10. Passeriformes: Emberizidae: Emberizinae, Catamblyrhynchinae, Cardinalinae, Thraupinae, And Tersininae, pp. 1-125 in Bulletin of the American Museum of Natural History 2012 (368) on page 6, DOI: 10.1206/775.1, http://zenodo.org/record/5399454
Crowd behaves as excitable media during Mexican wave
Creators: name: Farkas, Illes
name: Helbing, Dirk
name: Vicsek, Tamas
Publisher: name: arXiv
Year: 2002
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Mexican wave, or La Ola, first widely broadcasted during the 1986 World Cup held in Mexico, is a human wave moving along the stands of stadiums as one section of spectators stands up, arms lifting, then sits down as the next section does the same. Here we use variants of models originally developed for the description of excitable media to demonstrate that this collective human behaviour can be quantitatively interpreted by methods of statistical physics. Adequate modelling of reactions to triggering attempts provides a deeper insight into the mechanisms by which a crowd can be stimulated to execute a particular pattern of behaviour and represents a possible tool of control during events involving excited groups of people.
description: see the article's homepage at http://angel.elte.hu/wave and the Authors' homepages at http://angel.elte.hu/~fij, http://www.helbing.org and http://angel.elte.hu/~vicsek
Gravitomagnetic effects for polar circular geodesic orbits around a central rotating body
Creators: name: Iorio, Lorenzo
Publisher: name: arXiv
Year: 2002
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Astrophysics (astro-ph)
subject: Space Physics (physics.space-ph)
subject: FOS: Physical sciences

description: The gravitomagnetic corrections to the Keplerian period for a circular, geodesic orbit of a test particle in a polar plane containing the proper angular momentum J of a central rotating body are considered.
description: LaTex2e, No figures, no tables. Rewritten version accepted for publication in Il Nuovo Cimento B
Cephalocassis manillensis
Creators: name: Alexandre P. Marceniuk
name: Naércio A. Menezes
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Ariidae
Cephalocassis
Cephalocassis manillensis

description: Cephalocassis manillensis (Valenciennes, 1840)
Pimelodus manillensis Valenciennes in Cuvier & Valenciennes, 1840b: 192. Type locality: Manila, Philippines. Holotype: MNHN 1209.
Distribution: Southeast Asia.
Countries: Philippines.
Habitat: Brackish and fresh waters.
Maximum size: 260 mm TL.
description: Published as part of Alexandre P. Marceniuk & Naércio A. Menezes, 2007, Systematics of the family Ariidae (Ostariophysi, Siluriformes), with a redefinition of the genera., pp. 1-126 in Zootaxa 1416 on pages 49-50
Closely spaced and separately contacted 2d electron and 2d hole gases by in situ focussed ion implantation
Creators: name: Pohlt, M.
name: Lynass, M.
name: Lok, J. G. S.
name: Dietsche, W.
name: Klitzing, K. v.
name: Eberl, K.
name: Muhle, R.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Separately contacted double layers of a 2d electron - 2d hole gases have been prepared in GaAs separated by thin AlGaAs barriers with thicknesses down to 15 nm. The molecular-beam-epitaxial growth was interrupted just before the barrier in order to use in situ focussed-ion-beam implantation to pattern contacts which extend underneath the barrier. The two charge gases form upon biasing the p- and n-type contacts underneath and above the barrier in forward direction and show independent transistor-like behavior.
Emberiza affinis subsp. omoensis Neumann 1905
Creators: name: LeCroy, Mary
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Aves
Passeriformes
Emberizidae
Emberiza
Emberiza affinis
Emberiza affinis omoensis neumann

description: Emberiza affinis omoensis Neumann
 Emberiza affinis omoensis Neumann, 1905: 358 (Schetie in Koscha).
 Now Emberiza affinis omoensis Neumann, 1905. See Hartert, 1919: 162, White, 1963: 97, Dowsett and Dowsett-Lemaire, 1993: 379, and Fry and Keith, 2004: 572–574.
 HOLOTYPE: AMNH 715690, adult male, collected at Schetie in Koscha, Ethiopia, on 28 February 1901, by Oscar Neumann (no. 934). From the Rothschild Collection.
 COMMENTS: In the original description, Neumann designated as the type his specimen no. 934 and listed three additional specimens. The three paratypes are: AMNH 715691 (Neumann no. 1209), male, Pokodj am Gelo, 11 May 1901; AMNH 715692 (un-numbered), male, Gelo, April–May 1901; AMNH 715693 (474), female, Tomato in Gudji, östlich des Abaya-Sees, 24 December 1900.
I was unable to find the exact location of Schetie, but based on Neumann’s (1902) map and his itinerary (Neumann, 1904:323), it appears that he crossed the Omo River in the vicinity of Singe (06.22N, 36.19E, Times Atlas) and that Koscha is the area just north of the Omo.
description: Published as part of LeCroy, Mary, 2012, Type Specimens Of Birds In The American Museum Of Natural History Part 10. Passeriformes: Emberizidae: Emberizinae, Catamblyrhynchinae, Cardinalinae, Thraupinae, And Tersininae, pp. 1-125 in Bulletin of the American Museum of Natural History 2012 (368) on page 7, DOI: 10.1206/775.1, http://zenodo.org/record/5399454
Additional file 4: of Combination therapy targeting both innate and adaptive immunity improves survival in a pre-clinical model of ovarian cancer
Creators: name: Hartl, Christina
name: Bertschi, Adrian
name: Puerto, Regina
name: Andresen, Carolin
name: Cheney, Emily
name: Mittendorf, Elizabeth
name: Guerriero, Jennifer
name: Goldberg, Michael
Publisher: name: figshare
Year: 2019
Subjects: subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Figure S4. Chemotherapy induces an increase in granulocytic but not monocytic MDSCs. Mice were inoculated orthotopically with ID8-Vegf-Defb29 ovarian cancer cells. Eight days later, the mice were injected with vehicle (Veh) or chemotherapy (Chemo). Two days later, peritoneal cells were harvested and assessed by flow cytometry. (a) Increased numbers of granulocytic MDSCs (Ly6G+Ly6C+) are observed following chemotherapy. (b) Numbers of monocytic MDSCs (Ly6G−Ly6C+) and their expression of immunosuppressive ARG1 and IL-10 are quantified. The experiment was performed twice with n = 4 biological replicates. Statistics were calculated using a two-sided unpaired t-test. Data are presented as mean ± SEM **** p ≤ 0.0001. (PDF 78 kb)
Specific heat of the Coulomb glass
Creators: name: Mobius, A.
name: Thomas, P.
name: Talamantes, J.
name: Adkins, C. J.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: The specific heat of the Coulomb glass is studied by numerical simulations. Both the lattice model with various strengths of disorder, and the random-position model are considered for the one- to three-dimensional cases. In order to extend the investigations down to very low temperatures where the many-valley structure of the configuration space is of great importance we use a hybrid-Metropolis procedure. This algorithm bridges the gap between Metropolis simulation and analytical statistical mechanics. The analysis of the simulation results shows that the correlation length of the relevant processes is rather small, and that multi-particle processes yield an essential contribution to the specific heat in all cases except the one-dimensional random-position model.
description: Contribution to the Festschrift dedicated to Prof. Michael Pollak on the occasion of his 75th birthday
Emberiza schoeniclus subsp. pallidior Hartert 1904
Creators: name: LeCroy, Mary
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Aves
Passeriformes
Emberizidae
Emberiza
Emberiza schoeniclus
Emberiza schoeniclus pallidior hartert

description: Emberiza schoeniclus pallidior Hartert
 Emberiza schoeniclus pallidior Hartert, 1904: 197 (Aiderli in Turkestan).
 Now Emberiza schoeniclus pallidior Hartert, 1904. See Vaurie, 1956a: 7, and Dickinson, 2003: 780.
 HOLOTYPE: AMNH 715254, adult male, collected at Aiderli, Turkestan, on 11 November 1899 (Russian date, according to Hartert, 1919: 161), by Zarudny (no. 1298). From the Rothschild Collection.
 COMMENTS: In the original description, Hartert cited the Zarudny number of the type. There are 17 paratypes of pallidior in AMNH: AMNH 715255–715271, seven males, seven females, and three unsexed, from Vernyi, Ilyisk, and the Djarkent River, Turkestan, collected in February, September, October, and November 1899, and March 1900, by Zarudny. A number of other Turkestan specimens by other collectors are undated and are not considered paratypes. Other localities were mentioned in the original description.
description: Published as part of LeCroy, Mary, 2012, Type Specimens Of Birds In The American Museum Of Natural History Part 10. Passeriformes: Emberizidae: Emberizinae, Catamblyrhynchinae, Cardinalinae, Thraupinae, And Tersininae, pp. 1-125 in Bulletin of the American Museum of Natural History 2012 (368) on page 9, DOI: 10.1206/775.1, http://zenodo.org/record/5399454
On constrained analysis and diffeomorphism invariance of generalised Proca theories
Creators: name: Sanongkhun, Jarunee
name: Vanichchapongjaroen, Pichet
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: In this paper we consider generalised Proca theories coupled to any background field and with time-time and time-space components of Hessian of the vector sector are zero, whereas the space-space part is non-degenerate. By using Faddeev-Jackiw analysis, we derive the conditions that these theories have to satisfy in order for the vector sector to have three propagating degrees of freedom. Most of these conditions are trivialised due to diffeomorphism invariance requirements. This leaves only a condition that a complicated combination of terms should not be trivially zero. This condition is therefore easy to be fulfilled. For completeness, we have also investigated on how diffeomorphism invariance helps in simplifying Faddeev-Jackiw brackets.
description: 29 pages, no figure
Additional file 2: of Combination therapy targeting both innate and adaptive immunity improves survival in a pre-clinical model of ovarian cancer
Creators: name: Hartl, Christina
name: Bertschi, Adrian
name: Puerto, Regina
name: Andresen, Carolin
name: Cheney, Emily
name: Mittendorf, Elizabeth
name: Guerriero, Jennifer
name: Goldberg, Michael
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Figure S2. Functional enrichment analysis of unsorted cells highlights the importance of the innate immune system. Mice were inoculated with ID8-Vegf-Defb29 cancer cells. Eight days later, mice were injected with either vehicle or paclitaxel and carboplatin (Chemo). Two days thereafter, peritoneal cells were recovered and assessed by gene expression analysis. (a) The top 84 significantly upregulated genes after chemotherapy treatment with a fold change â Ľ1 were queried for their pathway interactions using the ToppGene Suite gene list enrichment analysis tool. (b) The genes induced by chemotherapy had a significant correlation with myeloid cell populations. (PDF 1020 kb)
Additional file 3: of Combination therapy targeting both innate and adaptive immunity improves survival in a pre-clinical model of ovarian cancer
Creators: name: Hartl, Christina
name: Bertschi, Adrian
name: Puerto, Regina
name: Andresen, Carolin
name: Cheney, Emily
name: Mittendorf, Elizabeth
name: Guerriero, Jennifer
name: Goldberg, Michael
Publisher: name: figshare
Year: 2019
Subjects: subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Inorganic Chemistry
subject: Hematology

description: Figure S3. Gating strategy used in flow cytometric analysis of immune cells harvested from the peritoneal cavity after treatment. Flow cytometric data were analyzed using FlowJo software. (PDF 423 kb)
Finite-size Scaling of Correlation Ratio and Generalized Scheme for the Probability-Changing Cluster Algorithm
Creators: name: Tomita, Yusuke
name: Okabe, Yutaka
Publisher: name: arXiv
Year: 2002
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We study the finite-size scaling (FSS) property of the correlation ratio, the ratio of the correlation functions with different distances. It is shown that the correlation ratio is a good estimator to determine the critical point of the second-order transition using the FSS analysis. The correlation ratio is especially useful for the analysis of the Kosterlitz-Thouless (KT) transition. We also present a generalized scheme of the probability-changing cluster algorithm, which has been recently developed by the present authors, based on the FSS property of the correlation ratio. We investigate the two-dimensional quantum XY model of spin 1/2 with this generalized scheme, obtaining the precise estimate of the KT transition temperature with less numerical effort.
description: 4 pages, RevTeX4, to appear in Phys. Rev. B, Rapid Communications
MOESM2 of Loss of the PTCH1 tumor suppressor defines a new subset of plexiform fibromyxoma
Creators: name: Sudeep Banerjee
name: Corless, Christopher
name: Miettinen, Markku
name: Sangkyu Noh
name: Ustoy, Rowan
name: Davis, Jessica
name: Chih-Min Tang
name: Yebra, Mayra
name: Burgoyne, Adam
name: Sicklick, Jason
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2: Figure S2. Absolute experimental and control data for cell viability assay.
Cephalocassis melanochir
Creators: name: Alexandre P. Marceniuk
name: Naércio A. Menezes
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Ariidae
Cephalocassis
Cephalocassis melanochir

description: Cephalocassis melanochir (Bleeker, 1852)
(fig. 36)
Arius melanochir Bleeker, 1852: 590. Type locality: Palembang, Sumatra, Indonesia. Holotype: RMNH 6892.
Arius doriae Vinciguerra, 1881: 174. Type locality: Sarawak state, Borneo, east Malaysia. Syntypes: MSNG 8135, RMNH 10889.
Distribution: Southeast Asia.
Countries: Indonesia and Malaysia.
Habitat: Freshwaters
Maximum size: 300 mm TL.
Material examined: CAS 49426 (3 al, 185-236 mm TL) (1 c&s), Indonesia, Borneo, Kalimantan Barat, fish market at Sintang (purchased); USNM 230311 (2 al, 228-312 mm TL), Indonesia, Borneo, Sintang market, Purchase.
description: Published as part of Alexandre P. Marceniuk & Naércio A. Menezes, 2007, Systematics of the family Ariidae (Ostariophysi, Siluriformes), with a redefinition of the genera., pp. 1-126 in Zootaxa 1416 on page 50
Pseudodira amazona Szawaryn 2015, sp. nov.
Creators: name: Szawaryn, Karol
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Coccinellidae
Pseudodira
Pseudodira amazona

description: Pseudodira amazona sp. nov.
(Figs 1–3, 28–32, 33)
 Type locality. Peru, San Martín Region, Tarapoto.
 Type material. HOLOTYPE: ♀, ‘ Amazones, Tarapote, M. de Mathan [collector], 4e Trimestre 1885’ (MNHN).
 Description. Length 7.5 mm; TL/EW = 1.18; PL/PW = 0.44; EL/EW = 1.06; EW/PW = 1.76. Body oval (Figs 2, 33). Pronotum chestnut brown with anterior angles piceous. Elytra chestnut brown with suture black. Pubescence short, dense, yellow. Punctation dual, shallow, with smaller punctures very fine, dense, larger punctures sparsely distributed.
Head covered with long, dense pubescence. Antennae with 11 antennomeres; scape about 2.3 times as long as pedicel; pedicel about 1.3 times as long as wide; as long as antennomere III. Antennomere III 2.1 times longer than wide, about 2.0 times as long as IV; antennomeres IV and VI subquadrate, antennomere V longer than wide, longer than antennomere IV, antennomeres IV–VI subquadrate; antennomeres VII and VIII transverse. Clypeus not produced.
Prosternal process (Fig. 1) 0.32 times as wide as mesoventral process, elongate, about 1.66 times as long as wide; mesoventral process flat, at median length of coxa 0.86 times as broad as corresponding coxal diameter.
Elytral epipleuron 2.5 times as wide as corresponding metanepisternum (Fig. 2).
Abdominal postcoxal lines incomplete laterally, parallel to posterior margin of ventrite 1 (Fig. 28). Female ventrite 5 weakly arcuate; abdominal sternite VIII weakly emarginate apically (Fig. 29).
Female genitalia (Figs 30, 32) with proctiger (TX) truncate at apex, transverse, about 2.4 times as wide as long; coxites suboval, about 1.9 times as wide as long; styli visible. Bursa copulatrix not divided, simple, spermatheca not observed.
Male unknown.
 Differential diagnosis. Pseudodira amazona sp. nov. can be separated from P. clypealis by having antennae with 11 antennomeres, clypeus not produced, and abdominal postcoxal lines not recurved. This species shares with P. carmelitana the abdominal postcoxal lines shape and the presence of styli, but its body size is larger (P. amazona – 7.5 mm, P. carmelitana – 6.0 mm), oval, with piceous anterior angles of pronotum, black elytral suture, and antennomere V as long as antennomere IV.
 Etymology. The name of the new species is an adjective referring to the Amazonian part of the Peru where the holotype was collected.
 Distribution. Peru (Fig. 36).
description: Published as part of Szawaryn, Karol, 2015, Revision of the Neotropical genus Pseudodira (Coleoptera: Coccinellidae: Epilachnini), pp. 203-215 in Acta Entomologica Musei Nationalis Pragae 55 (1) on pages 206-207, DOI: 10.5281/zenodo.5372914
Machine learning in APOGEE: Identification of stellar populations through chemical abundances
Creators: name: Garcia-Dias, Rafael
name: Prieto, Carlos Allende
name: Almeida, Jorge Sánchez
name: Palicio, Pedro Alonso
Publisher: name: arXiv
Year: 2019
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Machine Learning (cs.LG)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: The vast volume of data generated by modern astronomical surveys offers test beds for the application of machine-learning. It is important to evaluate potential existing tools and determine those that are optimal for extracting scientific knowledge from the available observations. We explore the possibility of using clustering algorithms to separate stellar populations with distinct chemical patterns. Star clusters are likely the most chemically homogeneous populations in the Galaxy, and therefore any practical approach to identifying distinct stellar populations should at least be able to separate clusters from each other. We applied eight clustering algorithms combined with four dimensionality reduction strategies to automatically distinguish stellar clusters using chemical abundances of 13 elements. Our sample includes 18 stellar clusters with a total of 453 stars. We use statistical tests showing that some pairs of clusters are indistinguishable from each other when chemical abundances from the Apache Point Galactic Evolution Experiment (APOGEE) are used. However, for most clusters we are able to automatically assign membership with metric scores similar to previous works. The confusion level of the automatically selected clusters is consistent with statistical tests that demonstrate the impossibility of perfectly distinguishing all the clusters from each other. These statistical tests and confusion levels establish a limit for the prospect of blindly identifying stars born in the same cluster based solely on chemical abundances. We find that some of the algorithms we explored are capable of blindly identify stellar populations with similar ages and chemical distributions in the APOGEE data. Because some stellar clusters are chemically indistinguishable, our study supports the notion of extending weak chemical tagging that involves families of clusters instead of individual clusters
Continuous canonical transformation for the double exchange model
Creators: name: Domanski, T.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: The method of continuous canonical transformation is applied to the double exchange model with a purpose to eliminate the interaction term responsible for non conservation of magnon number. Set of differential equations for the effective Hamiltonian parameters is derived. Within the lowest order (approximate) solution we reproduce results of the standard (single step) canonical transformation. Results of the selfconsistent numerical treatment are compared with the other known studies for this model.
description: 21 pages, 9 figures. Eur. Phys. J B (accepted for publication)
Gamma Rays from colliding winds in massive binaries. Status and prospects
Creators: name: Romero, Gustavo E.
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Binary systems formed by early-type stars with strong winds are known to display variable non-thermal radio emission, thermal X-rays, and, at least in one case (Eta Carina), $γ$ rays. Some of these systems are quite eccentric and the conditions for efficient particle acceleration and $γ$-ray production might manifest only occasionally. In this paper I briefly review the physics of colliding wind binaries with emphasis on the observational signatures of non-thermal particle acceleration. I discuss, in particular, the case of the system HD 93129A which is made up by an O2 If* star (the primary) and an O3.5 V star (the secondary). The primary is among the earliest, hottest, most massive, luminous, and windy O stars in the Galaxy. The periastron passage during 2018 will offer an outstanding observational window that will be exploited by an international multi-wavelength campaign.
description: 7 pages, 2 figures. Solicited review published in Rendiconti Lincei. Scienze Fisiche e Naturali, DOI: 10.1007/s12210-019-00763-2
Emberiza subcalcarata Brehm
Creators: name: LeCroy, Mary
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Aves
Passeriformes
Emberizidae
Emberiza
Emberiza subcalcarata

description: [Emberiza subcalcarata Brehm]
 Plectrophanes groenlandicus Brehm, 1831: 307 (Grönland)
 Now Calcarius lapponicus subcalcaratus (Brehm, 1826). See Hartert, 1918: 17, Salomonsen, 1931b: 112–113, Vaurie, 1956b: 24–25, and Dickinson, 2003: 780.
 LECTOTYPE: AMNH 456317, adult male, collected in Greenland, in June 1821. From the Brehm Collection via the Rothschild Collection.
 COMMENTS: Hartert (1918: 17) listed the adult male Brehm specimen collected in Greenland in June 1821 as the type of Plectrophanes groenlandicus, thereby designating it the lectotype. He (Hartert, 1918: 17) further stated that, while no Brehm specimen in the Rothschild Collection was labeled subcalcarata by Brehm, he thought that this specimen from Greenland probably should be considered the type of subcalcarata as well. While this is perhaps true, the type of subcalcarata may well turn up in another collection. There is one paralectotype of groenlandicus in AMNH: AMNH 456316, female, collected in Greenland in June 1821. AMNH 456315 is also perhaps a paralectotype, but it bears no date.
description: Published as part of LeCroy, Mary, 2012, Type Specimens Of Birds In The American Museum Of Natural History Part 10. Passeriformes: Emberizidae: Emberizinae, Catamblyrhynchinae, Cardinalinae, Thraupinae, And Tersininae, pp. 1-125 in Bulletin of the American Museum of Natural History 2012 (368) on page 10, DOI: 10.1206/775.1, http://zenodo.org/record/5399454
MOESM1 of Loss of the PTCH1 tumor suppressor defines a new subset of plexiform fibromyxoma
Creators: name: Sudeep Banerjee
name: Corless, Christopher
name: Miettinen, Markku
name: Sangkyu Noh
name: Ustoy, Rowan
name: Davis, Jessica
name: Chih-Min Tang
name: Yebra, Mayra
name: Burgoyne, Adam
name: Sicklick, Jason
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 1: Figure S1. Validation of transcript PCR products on agarose gel electrophoresis (full length gel).
Magnetohydrodynamic numerical simulation of the outflows driven by magnetic field and radiation force from the corona above a thin disk
Creators: name: Yang, Xiao-Hong
name: Bu, De-Fu
name: Li, Qi-Xiu
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: A hot corona is suggested to be above the standard thin disk. The anisotropy of hard X-ray emission in radio-quiet active galactic nuclei implies that the corona is not static and probably moves outwards like winds. We perform two-dimensional magnetohydrodynamical simulations to study the outflowing corona driven by magnetic field and radiation force. In our simulations, as the initial state and the boundary condition at the disk surface, the corona temperature is set to $10^9$ K inside 10 Schwarzschild radius ($r_{\rm s}$) while the corona temperature is set to $10^7$ K a 10 $r_{\rm s}$. We employ a weak poloidal magnetic field as the initial magnetic field. A collimated outflow and a wide-angle ordered outflow are observed in our simulations. The collimated outflow is around the rotational axis and has a bulk velocity of $\sim$0.03--0.3 $c$ ( $c$ is speed of light) at 90 $r_{\rm s}$, while their mass outflow rate is very low. The collimated outflow is a weak jet. The wide-angle ordered outflow is distributed at the middle and high latitudes and moves outwards with a velocity of $10^2$--$10^4$ km s$^{-1}$. The outflow velocity depends on the disk luminosity. The gas around the disk surface is turbulent, especially outside of 10 $r_{\rm s}$. The other properties of outflows are discussed in detail.
description: 11 pages, 8 figures; accepted for publication in ApJ
Coarse graining in spin foam models
Creators: name: Markopoulou, Fotini
Publisher: name: arXiv
Year: 2002
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We formulate the problem of finding the low-energy limit of spin foam models as a coarse-graining problem in the sense of statistical physics. This suggests that renormalization group methods may be used to find that limit. However, since spin foams are models of spacetime at Planck scale, novel issues arise: these microscopic models are sums over irregular, background-independent lattices. We show that all of these issues can be addressed by the recent application of the Kreimer Hopf algebra for quantum field theory renormalization to non-perturbative statistical physics. The main difference from standard renormalization group is that the Hopf algebra executes block transformations in parts of the lattice only but in a controlled manner so that the end result is a fully block-transformed lattice.
description: 38 pages, many eps figures
Tenuipalpus alpinus Collyer 1973
Creators: name: Castro, Elizeu B.
name: Beard, Jennifer J.
name: Ochoa
name: Ronald
name: Feres, Reinaldo J. F.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Tenuipalpidae
Tenuipalpus
Tenuipalpus alpinus

description: Tenuipalpus alpinus Collyer, 1973: 946.   (Figures 5–9)
description: Published as part of Castro, Elizeu B., Beard, Jennifer J., Ochoa, Ronald & Feres, Reinaldo J. F., 2018, Two species of Acaricis (Acari: Tenuipalpidae) from New Zealand, moved from the genus Tenuipalpus, with a key to the known species, pp. 855-867 in Acarologia 58 (4) on page 861, DOI: 10.24349/acarologia/20184290, http://zenodo.org/record/5755440
Hemipimelodus sundanensis
Creators: name: Alexandre P. Marceniuk
name: Naércio A. Menezes
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Siluriformes
Ariidae
Hemipimelodus
Hemipimelodus sundanensis

description: Hemipimelodus sundanensis Hardenberg, 1948: 411.
Type locality: Kota Agung. Sunda Strait, Sumatra, Indonesia.
description: Published as part of Alexandre P. Marceniuk & Naércio A. Menezes, 2007, Systematics of the family Ariidae (Ostariophysi, Siluriformes), with a redefinition of the genera., pp. 1-126 in Zootaxa 1416 on page 50
Additional file 1: of Combination therapy targeting both innate and adaptive immunity improves survival in a pre-clinical model of ovarian cancer
Creators: name: Hartl, Christina
name: Bertschi, Adrian
name: Puerto, Regina
name: Andresen, Carolin
name: Cheney, Emily
name: Mittendorf, Elizabeth
name: Guerriero, Jennifer
name: Goldberg, Michael
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer

description: Figure S1. Chemotherapy prolongs survival but does not synergize with PD-1 checkpoint blockade. (a) Mice were inoculated with ID8-Vegf-Defb29 cancer cells. Eight days later, mice were injected with either vehicle or paclitaxel and carboplatin (Chemo). A Kaplan-Meier curve is shown. (b) Mice were inoculated with ID8-Vegf-Defb29 cancer cells. Eight days later, treatment with chemotherapy alone or chemotherapy and anti-PD-L1 checkpoint blockade was initiated. The number of mice per group (n) and median survival (ms) are listed. Experiments were performed with biological replicates once or twice. Statistics were calculated using the Log-rank (Mantel-Cox) test. **** pÂ â ¤â 0.0001. (PDF 94 kb)
Exitianus capicola
Creators: name: Tezcan, S.
name: Gulpercin, N.
name: Zeybekoglu, U.
name: Karavin, M.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Cicadellidae
Exitianus
Exitianus capicola

description: Exitianus capicola (STÅL 1855)
M a t e r i a l e x a m i n e d Mu la: Bodrum, Aspat, 13.XI.2009, on weeds, 1 ex., totally 1 specimen.
D i s t r i b u t i o n i n T u r k e y: Mediterranean and Aegean regions of Turkey, Adana, Antalya, Ayd n, Bursa, Hatay, çel, zmir, Manisa, Mu la (ÖNDER et al. 2011).
description: Published as part of Tezcan, S., Gulpercin, N., Zeybekoglu, U. & Karavin, M., 2013, Contribution to the Fulgoromorpha (Cixiidae, Delphacidae) and Cicadomorpha (Aphrophoridae, Cicadidae, Cicadellidae) (Insecta: Hemiptera) fauna of farming terraces in Aspat (Strobilos) ancient city and its territorium, Bodrum, Mu la, western Turkey, pp. 2149-2153 in Linzer biologische Beiträge 45 (2) on page 2151, DOI: 10.5281/zenodo.5347100
Zonotrichia capensis subsp. costaricensis Allen
Creators: name: LeCroy, Mary
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Aves
Passeriformes
Emberizidae
Zonotrichia
Zonotrichia capensis
Zonotrichia capensis costaricensis allen

description: Zonotrichia capensis costaricensis Allen
 Zonotrichia capensis costaricensis Allen, 1891: 374 (San Jose´, Costa Rica).
 Now Zonotrichia capensis costaricensis Allen, 1891. See Hellmayr, 1938: 571–572, Chapman, 1940: 392–393, Byers et al., 1995: 236–238, and Dickinson, 2003: 782.
 HOLOTYPE: AMNH 48206, adult male, collected at San Jose´, 09.59N, 84.04W (Times Atlas), Costa Rica, on 14 September 1889, by C.F. Underwood (no. 410).
 COMMENTS: The AMNH number of the holotype was given in the original description and the range was said to be southern Mexico, Central America, and south to Colombia (Bogota) and probably to Ecuador. Paratypes are the following specimens collected or cataloged before the 29 September 1891 publication date of costaricensis: AMNH 35370–35374, unsexed and undated Bogota, Colombia, specimens purchased from J.M. Southwick and cataloged 12 April 1889; AMNH 48203, male, 31 May 1889; AMNH 48204, male immature, 31 March 1889; AMNH 48205, female, 14 September 1889, the last three specimens collected at San Jose´, Costa Rica, by C.F. Underwood, and cataloged 22 April 1890.
description: Published as part of LeCroy, Mary, 2012, Type Specimens Of Birds In The American Museum Of Natural History Part 10. Passeriformes: Emberizidae: Emberizinae, Catamblyrhynchinae, Cardinalinae, Thraupinae, And Tersininae, pp. 1-125 in Bulletin of the American Museum of Natural History 2012 (368) on page 13, DOI: 10.1206/775.1, http://zenodo.org/record/5399454
Thermodynamic properties of a simple model of like-charged attracting rods
Creators: name: Stilck, Juergen F.
name: Levin, Yan
name: Arenzon, Jeferson J.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We study the thermodynamic properties of a simple model for the possible mechanism of attraction between like charged rodlike polyions inside a polyelectrolyte solution. We consider two polyions in parallel planes, with $Z$ charges each, in a solution containing multivalent counterions of valence $α$. The model is solved exactly for $Z \le 13$ for a general angle $θ$ between the rods and supposing that $n$ counterions are condensed on each polyion. The free energy has two minima, one at $θ=0$ (parallel rods) and another at $θ=π/2$ (perpendicular rods). In general, in situations where an attractive force develops at small distances between the centers of the polyions, the perpendicular configuration has the lowest free energy at large distances, while at small distances the parallel configuration minimizes the free energy of the model. However, at low temperatures, a reentrant behavior is observed, such that the perpendicular configuration is the global minimum for both large and small distances, while the parallel configuration minimizes the free energy at intermediate distances.
description: 7 pages, 7 figures