cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 4: of Faecal carriage of antibiotic resistant Escherichia coli in asymptomatic children and associations with primary care antibiotic prescribing: a systematic review and meta-analysis
Creators: name: Bryce, Ashley
name: CĂŠire Costelloe
name: Hawcroft, Claire
name: Wootton, Mandy
name: Hay, Alastair
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Ampicillin resistance in faecal E. coli isolates from asymptomatic children, by OECD status. (DOCX 160Â kb)
Additional file 10: of Faecal carriage of antibiotic resistant Escherichia coli in asymptomatic children and associations with primary care antibiotic prescribing: a systematic review and meta-analysis
Creators: name: Bryce, Ashley
name: CĂŠire Costelloe
name: Hawcroft, Claire
name: Wootton, Mandy
name: Hay, Alastair
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Ceftazidime resistance in faecal E. coli isolates from asymptomatic children, by OECD status. (DOCX 38Â kb)
Additional file 6: of Faecal carriage of antibiotic resistant Escherichia coli in asymptomatic children and associations with primary care antibiotic prescribing: a systematic review and meta-analysis
Creators: name: Bryce, Ashley
name: CĂŠire Costelloe
name: Hawcroft, Claire
name: Wootton, Mandy
name: Hay, Alastair
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Co-trimoxazole resistance in faecal E. coli isolates from asymptomatic children, by OECD status. (DOCX 144Â kb)
Additional file 11: of Faecal carriage of antibiotic resistant Escherichia coli in asymptomatic children and associations with primary care antibiotic prescribing: a systematic review and meta-analysis
Creators: name: Bryce, Ashley
name: CĂŠire Costelloe
name: Hawcroft, Claire
name: Wootton, Mandy
name: Hay, Alastair
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Tetracycline resistance in faecal E. coli isolates from asymptomatic children, by OECD status. (DOCX 165Â kb)
MOESM1 of Anti-hepatitis, antioxidant activities and bioactive compounds of Dracocephalum heterophyllum extracts
Creators: name: Qiang-Qiang Shi
name: Dang, Jun
name: Huai-Xiu Wen
name: Yuan, Xiang
name: Yan-Duo Tao
name: Qi-Lan Wang
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Additional file 1. NMR data.
Additional file 3: of Faecal carriage of antibiotic resistant Escherichia coli in asymptomatic children and associations with primary care antibiotic prescribing: a systematic review and meta-analysis
Creators: name: Bryce, Ashley
name: CĂŠire Costelloe
name: Hawcroft, Claire
name: Wootton, Mandy
name: Hay, Alastair
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Data quality charts (split by studies reporting prevalence of resistance only and prevalence plus antibiotic exposure). (DOCX 77Â kb)
Additional file 1: of Molecular phylogeny of Squaliformes and first occurrence of bioluminescence in sharks
Creators: name: Straube, Nicolas
name: Chenhong Li
name: Claes, Julien
name: Corrigan, Shannon
name: Naylor, Gavin
Publisher: name: Figshare
Year: 2015
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Documentation of conducted analyses. (PDF 1710Â kb)
Additional file 2: of Minimally Invasive Ponto Surgery compared to the linear incision technique without soft tissue reduction for bone conduction hearing implants: study protocol for a randomized controlled trial
Creators: name: Calon, Tim
name: Hoof, Marc Van
name: Berge, Herbert Van Den
name: Bruijn, Arthur De
name: Tongeren, Joost Van
name: Hof, Janny
name: Brunings, Jan
name: Jonhede, Sofia
name: Anteunis, Lucien
name: Janssen, Miranda
name: Joore, Manuela
name: Holmberg, Marcus
name: Johansson, Martin
name: Stokroos, Robert
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Marine Biology
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Subject information. (PDF 159 kb)
Additional file 1: of Minimally Invasive Ponto Surgery compared to the linear incision technique without soft tissue reduction for bone conduction hearing implants: study protocol for a randomized controlled trial
Creators: name: Calon, Tim
name: Hoof, Marc Van
name: Berge, Herbert Van Den
name: Bruijn, Arthur De
name: Tongeren, Joost Van
name: Hof, Janny
name: Brunings, Jan
name: Jonhede, Sofia
name: Anteunis, Lucien
name: Janssen, Miranda
name: Joore, Manuela
name: Holmberg, Marcus
name: Johansson, Martin
name: Stokroos, Robert
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: SPIRIT checklist. (PDF 76 kb)
Additional file 1: of Implementation of recommended type 2 diabetes care for people with severe mental illness â   a qualitative exploration with healthcare professionals
Creators: name: McBain, Hayley
name: Mulligan, Kathleen
name: Lamontagne-Godwin, Frederique
name: Jones, Julia
name: Haddad, Mark
name: Flood, Chris
name: Thomas, David
name: Simpson, Alan
Publisher: name: Figshare
Year: 2016
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Interview Schedule. (DOCX 16 kb)
Additional file 2: of Implementation of recommended type 2 diabetes care for people with severe mental illness â   a qualitative exploration with healthcare professionals
Creators: name: McBain, Hayley
name: Mulligan, Kathleen
name: Lamontagne-Godwin, Frederique
name: Jones, Julia
name: Haddad, Mark
name: Flood, Chris
name: Thomas, David
name: Simpson, Alan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: Table S2. All belief statements by domain. (DOCX 23 kb)
Additional file 1: Table S1. of An HLA-C amino-acid variant in addition to HLA-B*27 confers risk for ankylosing spondylitis in the Korean population
Creators: name: Kwangwoo Kim
name: Bang, So-Young
name: Seunghun Lee
name: Hye-Soon Lee
name: Seung-Cheol Shim
name: Kang, Young
name: Chang-Hee Suh
name: Celi Sun
name: Nath, Swapan
name: Sang-Cheol Bae
name: Kim, Tae-Hwan
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Molecular Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Effect estimates for each residue at HLA-B amino-acid positions 70, 97,Â and 114. Table S2. Association of HLA-B amino-acid position 97 with ankylosing spondylitis in Korean and European populations. (PDF 84 kb)
Additional file 1: of KSHV gB associated RGD interactions promote attachment of cells by inhibiting the potential migratory signals induced by the disintegrin-like domain
Creators: name: Hussein, Hosni
name: Walker, Lia
name: Shaw Akula
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: FOS: Biological sciences

description: Supplementary section. (PDF 574 kb)
Additional file 1: of Ex vivo anti-malarial drug susceptibility of Plasmodium falciparum isolates from pregnant women in an area of highly seasonal transmission in Burkina Faso
Creators: name: Tahita, Marc
name: Halidou Tinto
name: Sibiri Yarga
name: Kazienga, Adama
name: Maminata Traore/Coulibaly
name: Valea, Innocent
name: Overmeir, Chantal Van
name: Rosanas-Urgell, Anna
name: Jean-Bosco Ouedraogo
name: Guiguemde, Robert
name: Geertruyden, Jean-Pierre Van
name: Erhart, Annette
name: DâAlessandro, Umberto
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Figure S1. Scatter of the IC50 values with geometric mean and the resistance cutoff (where available) of each drug. In order to better visualize and understand the data, a figure showing the scatter of the IC50 values with geometric mean and the resistance cutoff (where available) of each drug is proposed.
Zygodontomys brevicauda
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Zygodontomys
Zygodontomys brevicauda

description: Zygodontomys brevicauda (= Z. b. cherriei)
The karyotypes of 2n = 82 and 2n = 84 were described by Gardner & Patton (1976), and Voss (1991), but in both cases the authors mention the karyotype without description or illustration of the chromosomes. Bonvicino et al. (2003, pp. 124, Fig. 2B) described a karyotype of 2n = 82 and FN = 116. Autosomal complement: 18 biarmed pairs (two large and 16 medium to small decreasing in size), and 22 medium to small acrocentric pairs decreasing in size. Sex chromosomes: X, a large submetacentric; Y, a small metacentric. These variation in diploid number occurs sympatrically on specimens collected in Zulia, state of Venezuela (Table 11, Fig. 22).
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 83, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Sigmatoneura aquilis Liu, Li & Liu, 2011, sp. nov.
Creators: name: Liu, Luxi
name: Li, Fasheng
name: Liu, Zhiqi
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Psocodea
Psocidae
Sigmatoneura
Sigmatoneura aquilis

description: Sigmatoneura aquilis sp. nov.
(Figs. 12–18)
Male. Coloration (in alcohol). Body brown. Head (Fig. 12) brown with dark brown markings: a band of spots bordering epicranial suture stretching bilaterally on vertex; a quadrate frame on frons opening anteriorly and extending to antennal fossa. Compound eyes grayish black; ocelli black with grayish black ocellar field. Antennae and labrum dark brown; maxillary palpi brown with distal segments dark brown. Thorax brown with dark brown spots. Legs brown, with a band of dark brown marking on femur, tarsi and distal part of tibia dark brown. Fore wing (Fig. 13) hyaline with light brown markings basally, pterostigma fully dark brown with a dark brown band along proximal margin; hind wing (Fig. 14) hyaline, with light brown markings basally. Abdominal segments brown with dark brown spots; apical regions dark brown.
Morphology. Head small, epicranial suture concave and distinct. Fore wing: pterostigma with moderate hind angle, Rs-M crossvein short, distal margin of discoidal cell concave, Cu1a and M fused for a short distance or meeting at a point, radial fork branches diverge at an angle about 90°. Hind wing without marginal setae between R2+3 and R4+5. Hind tibia normal. Abdomen ovoid. Phallosome (Fig. 15) a frame, longer than wide, acuminate proximally and narrow distally, with posterior margin straight. Hypandrium (Fig. 16) with membranous regions anteromedially and marginally, sclerotized arms forming broad T-shaped regions. Epiproct (Fig. 17) with unsclerotized regions antero- and disto-medially; paraproct (Fig. 18) broad triangular, with a strong apical spine, sensory field with about 42 trichobothria.
Measurements. Bw: 6482, B: 4324, FW: 5367, HW: 3567, F: 1422, T: 1774, t1: 467, t2: 327, Mx4: 287, f1: 2372, f2: 2304, f3: 2301, IO/d: 2.867.
Material examined. Holotype male, CHINA: Guizhou Province, Kuankuoshui Nature Reserve, 12.viii.2010, Luxi Liu (CAU). Paratype, CHINA: 1 male, same as holotype.
Distribution. China (Guizhou).
Etymology. The species name refers to the obvious dark coloration of the specimens.
Remarks. The fore wing of the new species is most similar to Sigmatoneura kolbei described from Japan (Enderlein, 1906). Tsutsumi (1965) provided genitalia characters of S. kolbei from Taiwan, and the phallosome of S. aquilis is narrower distally and lacks lateral apophyses. Sclerotization regions in the epiproct and hypandrium are also different between the two species.
description: Published as part of Liu, Luxi, Li, Fasheng & Liu, Zhiqi, 2011, The genus Sigmatoneura Enderlein (Psocoptera: Psocidae), with two new species from China, pp. 33-41 in Zootaxa 2999 on pages 38-39, DOI: 10.5281/zenodo.203072
Zygodontomys brevicauda
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Zygodontomys
Zygodontomys brevicauda

description: Zygodontomys brevicauda (= Z. b. microtinus)
The karyotype of 2n = 78 was reported by Tranier (1976) based on a sample from French Guiana (Table 11), but the author did not describe or illustrate the karyotype. Another karyotype was reported by Mattevi et al. (2002, pp. 36, Fig. 2) and Bonvicino et al. (2009). Karyotype: 2n = 86 and FN = 96 to 100. Autosomal complement: two large submetacentric and subtelocentric pairs, four or five medium to small biarmed pairs, and the remaining being acrocentric. Sex chromosomes: X, a large submetacentric; Y, a medium subtelocentric. C-banding metaphases exhibited blocks of constitutive heterochromatin on the pericentromeric region of the majority of the autosomes, being usually absent on the two large autosomal pairs. The short arm of the X and the whole Y chromosomes were heterochromatic. G-banding was also performed. NORs, were localized at the short arms of one medium and one small acrocentric pairs, but in two metaphase plates a third pair, a medium acrocentric, showed a NORs on its long arm.
According to Bonvicino et al. (2009), the Brazilian populations of Zygodontomys presents, at least, three karyotypes reported, indicating that the diversity of this genus was underestimated in Brazil and suggesting the existence of several evolutionary lineages. Molecular phylogenetic analyses recovered three major clades congruent with known karyotypes, indicating the existence of three species, two of which currently undescribed, mentioned by the authors as Zygodontomys sp. 1 and Zygodontomys sp. 2, whose karyotypes were described below. According to Voss (2015), a more comprehensive revisionary work for the genus is still pending.
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on pages 83-84, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Additional file 1: of S100A16 promotes differentiation and contributes to a less aggressive tumor phenotype in oral squamous cell carcinoma
Creators: name: Sapkota, Dipak
name: Bruland, Ove
name: Himalaya Parajuli
name: Tarig Osman
name: Muy-Teck Teh
name: Johannessen, Anne
name: Costea, Daniela
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Supplementary Methods and Tables. Table S1. S100A16 expression and clinicopathological variables of the OSCC patients. Table S2. Details of the TaqMan assays used for qRT-PCR. Table S3. Details of the antibodies used for immunoblotting. (DOCX 31 kb)
Zygodontomys Allen 1897
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Zygodontomys

description: Zygodontomys sp. 1
Karyotype: 2n = 84 and FN = 96 to 98. Autosomal complement: two large submetacentric and subtelocentric pairs, four or five medium to small biarmed pairs, and the remaining being acrocentric. Sex chromosomes: X, a large submetacentric; Y, a medium subtelocentric. G-banding was also performed (Mattevi et al. 2002; Bonvicino et al. 2009).
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 85, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Additional file 1: of Pharmacological interventions for agitation in patients with traumatic brain injury: protocol for a systematic review and meta-analysis
Creators: name: Williamson, David
name: Frenette, Anne
name: Burry, Lisa
name: Perreault, Marc
name: Charbonney, Emmanuel
name: Lamontagne, François
name: Marie-Julie Potvin
name: Jean-François Giguère
name: Mehta, Sangeeta
name: Bernard, Francis
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: PRISMA-P (Preferred Reporting Items for Systematic review and Meta-Analysis Protocols) 2015 checklist: recommended items to address in a systematic review protocol. (DOCX 116 kb)
Zygodontomys Allen 1897
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Zygodontomys

description: Zygodontomys sp. 2
Karyotype: 2n = 82 and FN = 94. Autosomal complement: seven biarmed pairs (two large and five medium to small pairs), and 33 medium to small acrocentric pairs decreasing in size. Sex chromosomes: X, a large submetacentric; Y, a small submetacentric (Bonvicino et al. 2003, pp. 124, Fig. 2A; Bonvicino et al. 2009).
Unnamed generic taxon, currently named Handleyomys
These species its provisional position as a member alfaroi group because no new genus to encompass these taxa has yet been described, alfaroi (Allen 1891), chapmani (Thomas 1898), melanotis (Thomas 1893), rhabdops (Merriam 1901), rostratus (Merriam 1901), and saturatior (Merriam 1901) (Weksler 2015a).
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 85, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Additional file 2: of Pharmacological interventions for agitation in patients with traumatic brain injury: protocol for a systematic review and meta-analysis
Creators: name: Williamson, David
name: Frenette, Anne
name: Burry, Lisa
name: Perreault, Marc
name: Charbonney, Emmanuel
name: Lamontagne, François
name: Marie-Julie Potvin
name: Jean-François Giguère
name: Mehta, Sangeeta
name: Bernard, Francis
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology

description: Example of search strategy in MEDLINE. (DOCX 126 kb)
Oryzomys alfaroi
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Oryzomys
Oryzomys alfaroi

description: alfaroi
Karyotype: 2n = 60 and FN = 104. Autosomal complement: 23 metacentric and submetacentric pairs large to small decreasing in size, and six acrocentric pairs large to small decreasing in size. Sex chromosomes: X, a medium acrocentric; Y, a small acrocentric (Haiduk et al. 1979, pp. 611, Fig. 2B; Baker et al. 1983). G-banding karyotype was performed by Baker et al. (1983). Another karyotype for this species was reported by Musser et al. (1998) 2n = 62 and FN = 100. Autosomal complement: 16 metacentric and submetacentric pairs (four large, four medium, and eight small), four subtelocentric pairs (two large and two medium), and 10 acrocentric pairs (three large, three medium, and four small). Sex chromosomes: X, a large subtelocentric; Y, a small acrocentric.
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 85, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Oryzomys melanotis
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Oryzomys
Oryzomys melanotis

description: melanotis
Karyotype: 2n = 62 and FN = 70. Autosomal complement: one medium subtelocentric pair, four metacentric pairs (one medium and three small), and 25 acrocentric pairs large to small decreasing in size. Sex chromosomes: X, a large metacentric; Y, a medium subtelocentric. C-banding metaphases exhibited blocks of constitutive heterochromatin on the pericentromeric region of all autosomes. The X chromosome presented a pericentromeric heterochromatic blocks (Haiduk et al. 1979, pp. 611, Fig. 1A). G-banding karyotype was performed by Haiduk et al. (1979) and Baker et al. (1983).
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 85, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
title: Discovery of nostatin A, an azole-containing proteusin with prominent cytostatic and pro-apoptotic activity
Creators: name: Delawská, Kateřina
name: Hájek, Jan
name: Voráčová, Kateřina
name: Kuzma, Marek
name: Mareš, Jan
name: Vicková, Kateřina
name: Kádek, Alan
name: Tučková, Dominika
name: Koch, Lukas
name: Niedermeyer, Timo J. H.
Publisher: name: Freie Universität Berlin
Year: 2025
Subjects: subject: nostatin A
subject: azole-containing proteusin
subject: cytostatic and pro-apoptotic activity
classificationCode: 615
subject: Pharmakologie, Therapeutik

description: Ribosomally synthesized and post-translationally modified peptides (RiPPs) are intriguing compounds with potential pharmacological applications. While many RiPPs are known as antimicrobial agents, a limited number of RiPPs with anti-proliferative effects in cancer cells are available. Here we report the discovery of nostatin A (NosA), a highly modified RiPP belonging among nitrile hydratase-like leader peptide RiPPs (proteusins), isolated from a terrestrial cyanobacterium Nostoc sp. Its structure was established based on the core peptide sequence encoded in the biosynthetic gene cluster recovered from the producing strain and subsequent detailed nuclear magnetic resonance and high-resolution mass spectrometry analyses. NosA, composed of a 30 amino-acid peptide core, features a unique combination of moieties previously not reported in RiPPs: the simultaneous presence of oxazole/thiazole heterocycles, dehydrobutyrine/dehydroalanine residues, and a sactionine bond. NosA includes an isobutyl-modified proline residue, highly unusual in natural products. NosA inhibits proliferation of multiple cancer cell lines at low nanomolar concentration while showing no hemolysis. It induces cell cycle arrest in S-phase followed by mitochondrial apoptosis employing a mechanism different from known tubulin binding and DNA damaging compounds. NosA also inhibits Staphylococcus strains while it exhibits no effect in other tested bacteria or yeasts. Due to its novel structure and selective bioactivity, NosA represents an excellent candidate for combinatorial chemistry approaches leading to development of novel NosA-based lead compounds.
Gahrliepia (Gahrliepia) starki Lakshana and Dohany 1972
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Trombiculidae
Gahrliepia
Gahrliepia starki

description: Gahrliepia (Gahrliepia) starki Lakshana and Dohany, 1972:
ORI
Duplisetia (Starkia) starki, Wen 1999 a
Gahrliepia starki, Chaisiri et al. 2016; Stekolnikov 2021
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 24, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Additional file 1: Figure S1. of Monitoring the impact of a national school based deworming programme on soil-transmitted helminths in Kenya: the first three years, 2012 â   2014
Creators: name: Collins Okoyo
name: Nikolay, Birgit
name: Kihara, Jimmy
name: Elses Simiyu
name: Garn, Joshua
name: Freeman, Mathew
name: Mwanje, Mariam
name: Dunstan Mukoko
name: Brooker, Simon
name: Pullan, Rachel
name: Njenga, Sammy
name: Mwandawiro, Charles
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Computational Biology

description: Outline of the 5-year monitoring and evaluation programme. Table S1. Intensity thresholds for light, moderate and heavy infections with Ascaris lumbricoides, Trichuris trichiura, hookworms and schistosomes. Table S2. Y1 baseline and Y3 mid-term prevalence % (95 % CI) and relative reduction (RR) by county. Table S3. Y1 baseline and Y3 mid-term average intensity (epg) (95 % CI) and relative reduction (RR) by county. Table S4. Overall prevalence (%) and average intensity (epg) of STH: Based on the 59 schools. (DOCX 54 kb)
Additional file 2: of A critical evaluation of the effectiveness of interventions for improving the well-being of caregivers of children with cerebral palsy: a systematic review protocol
Creators: name: Dambi, Jermaine
name: Jelsma, Jennifer
name: Mlambo, Tecla
name: Chiwaridzo, Matthew
name: Tadyanemhandu, Cathrine
name: Chikwanha, Mildred
name: Corten, Lieselotte
Publisher: name: Figshare
Year: 2016
Subjects: Medicine
Cancer
Science Policy

description: JBI critical appraisal checklist for descriptive/case series. (DOC 107Â kb)
Additional file 3: of A critical evaluation of the effectiveness of interventions for improving the well-being of caregivers of children with cerebral palsy: a systematic review protocol
Creators: name: Dambi, Jermaine
name: Jelsma, Jennifer
name: Mlambo, Tecla
name: Chiwaridzo, Matthew
name: Tadyanemhandu, Cathrine
name: Chikwanha, Mildred
name: Corten, Lieselotte
Publisher: name: Figshare
Year: 2016
Subjects: Medicine
Cancer
Science Policy

description: JBI critical appraisal checklist for comparable cohort/case control. (DOC 107Â kb)
Pteris austrotaiwanensis Y. S. Chao
Creators: name: Yang, Dongmei
name: Wang, Jiamei
name: Guo, Rui
name: Zhu, Hongjuan
name: Ma, Changwang
name: Yu, Jing
name: Liu, Ya
name: Wu, Yougen
name: Shang, Hui
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Polypodiopsida
Polypodiales
Pteridaceae
Pteris
Pteris austrotaiwanensis

description: Pteris austrotaiwanensis Y.S. Chao in Taiwania 66(3): 313, f. 1A–C. 2021.
Type:— CHINA. Taiwan: Kaohsiung, Mt. Meilun, Y.S. Chao 3255 (holotype TAIF!, isotype TAIF!)
Pteris fauriei Hieron. var. chinensis Ching et S.H. Wu in Acta Bot. Austro Sin. 1: 10. 1983.
Type:— CHINA. Guangdong: Qujiang, C. Wang 31659 (holotype IBSC!, isotype PE!)
Description:—Rhizomes short-creeping, densely covered with linear-lanceolate black-brown scales. Fronds clustered, 50–80 cm long, nearly monomorphic; stipes 20–40 cm long, stramineous or abaxially red, sparsely scaly at base; laminae green to dark green, herbaceous, ovate, 15–44 cm long, 15–30 cm wide, bipinnatisect; lateral pinnae lanceolate, 3–6 pairs, 16–22 × 1.8–6 cm, opposite, sessile, with one pair of basiscopic pinnules, apex caudate, 2–3 cm long; segments falcate, 20–35 × 3–8 mm, apex acute or obtuse, margins entire; veins forked, free. Sori linear; spore number 32, spore size 48.9 × 26.8 μm.
Distribution: —In dense forests, below 1000 m, South China, Guizhou and Taiwan.
Specimens examined: — CHINA. Guangdong: C. Wang 40734 (PE), Y.H. Yan, S.L. Jin, Y. Wang & X.F. Zhu WYD198 (CSH). Guangxi: R.H. Jiang, J.C. Yang & S.S. Mo 11493 (IBK), L.Y. Yu, B.Y. Huang, D.X. Nong et al. 451422121209016LY (GXM), J.M. Wang 20150129, 20150129-3 (IBSC). Hainan: W.T. Tsang 616 (PE), S.Y. Dong 499 (PE). Guizhou: H.J. Wei, J.B. Zhang & Y. Wang WYG047 (CSH).
Taxonomic notes: — Pteris austotaiwanensis is different from P. fauriei by broader lateral pinnae (up to 6 cm wide) and wider segments of pinnae (up to 8 mm wide). Its herbaceous laminae, ovate lamina shape, broad lateral pinnae, and wide segments are similar to P. latipinna, but the laminae of P. austrotaiwanensis are green to dark green, while those of P. latipinna are light green.
According to the study of Chao et al. (2022), the very similar P. austrotaiwanensis and P. latipinna have different chloroplast and nuclear DNA haplotypes but share similar habitat preferences and the same ploidy level. Therefore, their similarity in morphology is probably caused by adaption to this specific habitat.
description: Published as part of Yang, Dongmei, Wang, Jiamei, Guo, Rui, Zhu, Hongjuan, Ma, Changwang, Yu, Jing, Liu, Ya, Wu, Yougen & Shang, Hui, 2024, New taxonomic treatments in the Pteris fauriei group (Pteridaceae), pp. 223-236 in Phytotaxa 647 (3) on page 233, DOI: 10.11646/phytotaxa.647.3.2, http://zenodo.org/record/13215706
Pteris omeiensis Ching
Creators: name: Yang, Dongmei
name: Wang, Jiamei
name: Guo, Rui
name: Zhu, Hongjuan
name: Ma, Changwang
name: Yu, Jing
name: Liu, Ya
name: Wu, Yougen
name: Shang, Hui
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Polypodiopsida
Polypodiales
Pteridaceae
Pteris
Pteris omeiensis

description: Pteris omeiensis Ching in Bull. Fan. Mem. Inst. Biol. new ser. 1: 312. 1949.
Type:— CHINA. Szechuan: Mt. Omei, C.S. Chang 755 (lectotype PE!), T.C. Lee 3209 (syntype PE!), Nos. 17899, 17956, 18018 ex Dept. Biol. Nat. Szechuan University (paratype SZ!)
Description: —Plants 50–80 cm tall. Rhizome short, thick, erect, sparsely scaly but apex with dense, linear-lanceolate brown scales. Fronds clustered; stipe hard, stout, 50–60 cm long, basally reddish brown, sparsely scaly, upper part and rachis and costae pale green; lamina 2(or 3)-pinnatipartite, narrowly oblong, 30–35 × 10–20 cm; lateral pinnae 8–12 pairs, 12–16 × 1.5–1.7 cm, 3–4 cm apart, ascending-oblique, sessile, narrow lanceolate, apex long-caudate, base cuneate, lowest pair of pinnae 7 cm apart from the next pinnae, often with 1–2 basiscopic short pinnules, terminal pinna same as lateral pinnae, with stalk ca. 1 cm long, pectinately pinnatifid nearly down to costa; segments in 30–35 pairs, falcate, alternate or opposite, 10 × 3.5 mm, entire; costae glabrous, abaxially grooved, with stout spines along costules; veins free, 2-forked at base; lamina pale green when dried, chartaceous. Sori linear; spore number 32; spore size 46 µm.
Distribution and conservation status: —At the edge of woods, at 500–1200 m. It is only found in Sichuan and Guizhou, Southwest China. Due to its limited distribution, we suggest it should be classified as “Near Threatened”, according to the IUCN Red List criteria (IUCN, 2012).
Common name (assigned here):—E Mei Feng Wei Jue (峨眉Ṃ尾⁂; Chinese name)
Specimens examined: — CHINA. Guizhou: Unknown collector1835 (PE), J.M.Wang20150516001,20150516009 (IBSC).
Taxonomic notes: — Pteris omeiensis is distinct from P. kiuschiuensis by ascending and narrow lanceolate lateral pinnae. It also differs from P. oshimensis by stout stipes, more and longer pinnae and chartaceous laminae, while P. oshimensis is short and tender with herbaceous laminae, and sparser and shorter pinnae (Fig. 3).
Despite the difference in plant morphology, P. omeiensis is sister to P. kiuschiuensis in the cpDNA phylogenetic tree, and they are similar in spore morphology, indicating a close genetic relationship.
description: Published as part of Yang, Dongmei, Wang, Jiamei, Guo, Rui, Zhu, Hongjuan, Ma, Changwang, Yu, Jing, Liu, Ya, Wu, Yougen & Shang, Hui, 2024, New taxonomic treatments in the Pteris fauriei group (Pteridaceae), pp. 223-236 in Phytotaxa 647 (3) on pages 233-234, DOI: 10.11646/phytotaxa.647.3.2, http://zenodo.org/record/13215706
Okanagana Distant 1905
Creators: name: Heath, M. S.
name: Sanborn, A. F.
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Cicadidae
Okanagana

description: Key to the Arizona Okanagana
1. Abdominal sternites predominantly pale.... 2
1'. Abdominal sternites black, margined posteriorly with color...................... 7
2(1). Body and tegmina venation red...................... O. rubroƲenosa Davis
2'. Body and tegmina venation colored variously.............................. 3
3 (2'). Sub-costal vein bordering radial cell dark................ O. hesperia (Uhler)
3'. Sub-costal vein bordering radial cell yellow............................. 4
4 (3'). Pronotal collar black........................... O. tristis Van Duzee
4'. Pronotal collar pale............... 5
5 (4'). Length of body>25 mm........................... O. tanneri Davis
5'. Length of body <25 mm............ 6
6 (5'). Venation from the base of tegmina to the marginal cells pale... O. synodica (Say)
6'. Venation of tegmina predominantly dark............... O. striatipes (Haldeman)
7 (1'). Lateral margins of pronotum black.... 8
7'. Lateral margins of pronotum pale..... 10
8 (7). Venation of tegmina bright red......................... O. rubroƲenosa
8'. Venation of tegmina dark........... 9
9 (8'). Costal margin of tegmina orange to the apex........... O. magnifica Davis
9'. Costal margin of tegmina orange to nodus, dark beyond.............. O. georgi, sp. n.
10 (7'). Wings semiopaque........................... O. fumipennis Davis
10'. Wings hyaline................. 11
11 (10'). Clypeus black,a single pale spot separating the postclypeus and anteclypeus................. O. mariposa Davis
11'. Clypeus black, a pale medial stripe extending over the apex.................. 12
12 (11'). Spines on fore femora pale..................... O. utahensis Davis
12'. Spines on fore femora black........ 13
13 (12'). Fore femora with a vestigial third spine.................. O. bella Davis
13'. Fore femora lacking vestigial third spine................. O. rubrocaudata Davis
description: Published as part of Heath, M. S. & Sanborn, A. F., 2007, A New Species of Cicada of the Genus Okanagana (Hemiptera: Cicadoidea: Cicadidae) from Arizona, pp. 483-489 in Annals of the Entomological Society of America 100 (4) on page 484, DOI: 10.1603/0013-8746(2007)100[483:ansoco]2.0.co;2, http://zenodo.org/record/8246852
Araliacothrips Li & Li & Zhang 2018, gen.n.
Creators: name: Li, Yajin
name: Li, Zhengyue
name: Zhang, Hongrui
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Thysanoptera
Thripidae
Araliacothrips

description: Araliacothrips gen.n.
Macropterous, body slender, dark brown, with strongly reticulate surface. Antennae 8-segmented, III and IV with long apical neck (Figs. 5, 7), III and IV each with sense cone long and forked, IV with one simple sense cone laterally (Fig. 5); segment VI constricted at base, VIII much longer than VII. Head completely reticulate, sculpture on dorsal surface not raised; slightly longer than wide, cheeks parallel, constricted behind eyes and at basal neck; compound eyes with 6 weakly pigmented facets; occipital region without apodeme or collar; ocellar setae pair I present, pair III on anterolateral margins of ocellar triangle; maxillary palps 2-segmented. Pronotum reticulate, with convex posterior margin, setae small and equal in length (Fig. 9). Mesoscutum with short posteromedian cleft; metascutum reticulate without median strong triangle, median pair of setae far from anterior margin, campaniform sensilla present (Fig. 13); metathoracic endofurca simple and not sinuate, with short Y-shaped arms (Fig. 15). Femora and tibiae reticulate, tarsi 1-segmented. Fore wing with apex acute and posterior fringe cilia wavy, first vein with setal row widely interrupted, second vein with scattered setae (Fig. 6). Abdominal tergites reticulate, tergal median setae small; posterior margin of tergite I with dentate craspedum (Fig. 10); lateral thirds of tergites with reticles; tergite II not constricted and without strong microtrichia (Fig. 11); tergites III–VIII with arched antecostal ridge, median tergal setae small and well separated from each other, sub-median setae slightly curved or sigmoid (Figs 12, 14); both tergites and sternites with broad craspedum on segments II–VIII; tergite VIII with posteromarginal comb present laterally (Fig. 14); tergite X symmetric, with median split complete; setae on tergite IX longer than tergite X (Fig. 14); sternites with setae small. Male sternites IV–VII with transverse pore plate anterior to antecostal ridge (Fig. 4); tergite IX with paired thorn-like setae (Fig. 3).
Type species Araliacothrips daweishanensis sp.n.
description: Published as part of Li, Yajin, Li, Zhengyue & Zhang, Hongrui, 2018, A new Panchaetothripinae genus and species, also a newly recorded genus, from Southwestern China (Thysanoptera: Thripidae), pp. 235-242 in Zootaxa 4394 (2) on pages 235-236, DOI: 10.11646/zootaxa.4394.2.6, http://zenodo.org/record/1197684
Additional file 1: Figure S1. of Effect of systemic high dose enzyme replacement therapy on the improvement of CNS defects in a mouse model of mucopolysaccharidosis type II
Creators: name: Cho, Sung Yoon
name: Jeehun Lee
name: Ah-Ra Ko
name: Kwak, Min Jung
name: Sujin Kim
name: Sohn, Young Bae
name: Park, Sung Won
name: Jin, Dong-Kyu
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified

description: Measurement of total GAG in other tissues and in urine. (DOCX 607Â kb)
Use of municipal solid waste incineration (MSWI) bottom ash as a permeable subgrade material: An experimental and mechanism study
Creators: name: Tian, Angran
name: Zhou, Yu
name: Chen, Yuru
name: Kan, Deming
name: Lu, Yanling
name: Tang, Qiang
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Cell Biology
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: As a traditional method of waste treatment, municipal solid waste incineration (MSWI) has become one of the main methods of urban waste treatment. However, as a byproduct of MSWI, a large amount of MSWI bottom ash is not reused in current practice. This study innovatively posits MSWI bottom ash as an eco-friendly adsorbent rather than a pollutant, exploring its potential application as a permeable subgrade material. The results reveal that MSWI bottom ash exhibits promising properties to serve as a permeable subgrade material to achieve the permeability and improve the sustainability for subgrade. Due to the arrangement of its particles, it shows excellent performance in shear strength and permeability, which are comparable to or surpass those of sandy soils. The average pore width of 14.200 nm allows heavy metal substances to be encapsulated within the matrix, significantly reducing their leachability, thereby aligning with environmental friendliness standards. Its adsorption capacity is about 6.60 mg/g, and the adsorption capacity per volume is 3.66 times and 2.04 times that of fly ash and clay, respectively. The mechanism analysis shows that the adsorption process is monolayer heterogeneous adsorption. This paper presents a novel perspective on reusing MSWI bottom ash and provides evidence supporting its effective utilization as a permeable subgrade material, offering substantial environmental benefits through enhanced adsorption ability. Implications: Municipal solid waste incineration (MSWI) is a common method for municipal solid waste treatment, while the MSWI bottom ash is often not reused. This paper explored the explores the feasibility of using MSWI bottom ash as a permeable road base material. The results show that the particle arrangement enables excellent shear strength and permeability, comparable to sandy soil. It meets safety requirements for the leaching of heavy metals and acts as an adsorbent for pollutants leaching from permeable pavements. Furthermore, the mechanisms underlying these behaviors of MSWI were confirmed by microstructural and mineralogical analyses. These indicate that MSWI bottom ash has great potential as a permeable road base material. This paper provides a clear understanding of the physical, mechanical and environmental properties of MSWI bottom ash, which can promote its reuse in practice.
Additional file 18: Figure S12. of Gene expression meta-analysis reveals immune response convergence on the IFNÎł-STAT1-IRF1 axis and adaptive immune resistance mechanisms in lymphoma
Creators: name: Care, Matthew
name: Westhead, David
name: Tooze, Reuben
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology
subject: 110309 Infectious Diseases
subject: Plant Biology
subject: Computational Biology

description: Relates to Fig.Â 8b. Integrated gene signature and ontology enrichments for TRAT1 focus gene analysis. Upper panel: the hierarchical clustering of enriched gene signature and GO terms related to genes correlating with TRAT1 in focus gene analysis. Correlations are illustrated in the heatmap on a blue (least) to red (most) scale as indicated at the top of the figure. Along the edges of the heatmap the signature terms are provided (and correspond to terms listed in Additional file 17). The FDR-corrected p value for enrichment of the signature is illustrated as a bar on either side of the heatmap, along with an indication of the type of term (signature versus ontology) and the origin of the terms as indicated in the figure. Lower panel: the hierarchical clustering of genes correlating with TRAT1 in focus gene analysis. Genes shown are clustered according to the correlation of enriched signature/GO term membership. Correlations are illustrated in the heatmap on a blue (least) to red (most) scale as indicated at the top of the figure. Along the edges of the heatmap official gene symbols are provided. (PDF 1104 kb)