cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Luisumaoppia Ermilov 2022, gen. nov.
Creators: name: Ermilov, Sergey G.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Sarcoptiformes
Oppiidae
Luisumaoppia

description: Genus Luisumaoppia gen. nov.
Type species: Luisumaoppia molinoensis sp. nov.
Generic diagnosis (adult). With character states of Oppiinae (Subías & Balogh 1989; Balogh & Balogh 1992). Sexual species with distinct dimorphism absent. Size. Length about 410–470. Integument. Surface without heavy sculpturing and ornamentation. Prodorsum. Rostrum rounded. Costula, transcostula, lateral carina, and interbothridial tubercle absent. Interbothridial region with muscle sigillae. Rostral and lamellar setae well developed, setiform; interlamellar seta absent. Bothridial seta comparatively short, nearly globular. Notogaster. Without humeral tooth and crista. Nine pairs of setiform setae including c; dorsomedial notogastral part without setae; c minute; lp absent; two dorsal pairs very long, others comparatively short. Gnathosoma. Subcapitulum diarthric. Adoral seta present. Palp setation: 0-2-1-3-9(+1 ω). Palp solenidion short, swollen apically, located in distal part of tarsus. Chelicera chelate-dentate. Epimeral and lateral podosomal regions. Epimeral border IV present. Epimeral setal formula: 3-1-3-3; all setae setiform. Ventrosejugal tubercle absent. Pedotectum I represented by small lamina. Discidium developed. Anogenital region. Five pairs of genital, one pair of aggenital, two pairs of anal, and three pairs of adanal setae, all setae setiform. Adanal seta ad 1 posterior, ad 2 lateral, ad 3 anterolateral to anal plate, distance between ad 3 – ad 3 longer than ag–ag and ad 2 – ad 2. Adanal lyrifissure close and parallel to anal aperture. Legs. All leg pretarsi bent, bearing modified (nearly straight), directed backwards claw. Tarsus I with 20 setae (l” and v’ present); tarsus II with 15 setae (l” absent); tarsus II with one solenidion.
Etymology. The generic name is derived from the names of my friends and colleagues Luis S. Subías and Umukusum (Uma) Ya. Shtanchaeva, the acarologists from the Universidad Complutense de Madrid, Madrid, Spain + ‘ oppia ’, a common suffix for generic names in Oppiidae.
Remarks. The new genus differs from the other genera of the family Oppiidae by the combination of the following main character states: costular-transcostular complex and interlamellar seta absent; bothridial seta comparatively short, nearly globular; nine pairs of setiform notogastral setae present including minute c (lp absent), of these, two pairs of dorsal setae (la and lm) very long and in several times longer than other setae; five pairs of genital setae; adanal seta ad 1 located posterior to anal aperture; adanal lyrifissure close and parallel to anal plate; all leg pretarsi bent, bearing modified (nearly straight) claw. See “Discussion” section below.
description: Published as part of Ermilov, Sergey G., 2022, Luisumaoppia molinoensis gen. nov., sp. nov. (Acari, Oribatida, Oppiidae) from Peru, pp. 131-138 in Zootaxa 5105 (1) on page 132, DOI: 10.11646/zootaxa.5105.1.5, http://zenodo.org/record/6332477
Additional file 3: Table S2. of Genome-wide expression profiling in muscle and subcutaneous fat of lambs in response to the intake of concentrate supplemented with vitamin E
Creators: name: Gonzรกlez-Calvo, Laura
name: Dervishi, Elda
name: Joy, Margalida
name: Sarto, Pilar
name: Martin-Hernandez, Roberto
name: Serrano, Magdalena
name: Ordovรกs, Jose
name: Calvo, Jorge
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Virology

description: DAVID Functional Annotation Clustering of SAM genes in VE vs. CON muscle L. Thoracis. Only is shown the 2 most enrichment cluster. (DOCX 16 kb)
Eugenia matudae Lundell, Phytologia
Creators: name: Uc Gala, Victor C.
name: Valdemarin, Karinne Sampaio
name: Lucas, Eve
name: Negrão, Raquel
name: Mazine, Fiorella F.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Myrtales
Myrtaceae
Eugenia
Eugenia matudae

description: 43. * Eugenia matudae Lundell, Phytologia 1: 218 (1937)
EOO: 8 km ². AOO: 8 km ². Evaluation of IUCN: Vulnerable.
Eugenia matudae with a very restricted distribution, with only two records for the state of Chiapas, in southeastern Mexico. The estimated extent of occurrence (EOO) and area of occupancy (AOO) fall into the Critically Endangered category under the criterion B. The species occurs in the biome called Humid Tropical Forest from 30 to 800 m elev. There are only one or two known locations. The occurrence habitat is in a good state of conservation due to the proximity with the protected area “Reserva de la Biosfera El Triunfo”, in Chiapas, an important area for the conservation of Mexico’s biological wealth (Rzedowski 1994, Rzedowski 1978, Ochoa-Gaona 1996, Miranda 1952, Breedlove 1981, Matuda 1950, Perez-Ferrara et al. 2012, Martínez-Meléndez et al. 2008, INE-SEMARNAP 1999b). However, considering that Eugenia matudae occurs outside of the protected area and any stochastic or anthropic activities could drive the taxon to CR or EX in a very short time, this species is here classified as Vulnerable (VU), under the criterion D2. It is worth mentioning that efforts to make new collections must be made, since its last known record dates from 72 years ago.
Specimen examined:— MEXICO. Chiapas: Matuda 17555 (MICH).
description: Published as part of Uc Gala, Victor C., Valdemarin, Karinne Sampaio, Lucas, Eve, Negrão, Raquel & Mazine, Fiorella F., 2023, Eugenia (Myrtaceae) from Mexico: checklist, distribution, and conservation assessments, pp. 99-140 in Phytotaxa 583 (2) on page 116, DOI: 10.11646/phytotaxa.583.2.1, http://zenodo.org/record/7609258
Cornicola Ohara & Hayashi 2022
Creators: name: Jiao, Meng
name: Yang, Maofa
name: Yan, Bin
name: Yu, Xiaofei
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Cicadellidae
Cornicola

description: Cornicola Ohara & Hayashi, 2022
China (Chongqing)
description: Published as part of Jiao, Meng, Yang, Maofa, Yan, Bin & Yu, Xiaofei, 2024, A new genus of tribe Dikraneurini (Hemiptera: Cicadellidae: Typhlocybinae) from China based on a new species and genus checklist from China provided, pp. 135-140 in Zootaxa 5543 (1) on page 137, DOI: 10.11646/zootaxa.5543.1.8, http://zenodo.org/record/14385838
Eugenia michoacanensis Lundell, Wrightia
Creators: name: Uc Gala, Victor C.
name: Valdemarin, Karinne Sampaio
name: Lucas, Eve
name: Negrão, Raquel
name: Mazine, Fiorella F.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Myrtales
Myrtaceae
Eugenia
Eugenia michoacanensis

description: 44. * Eugenia michoacanensis Lundell, Wrightia 3: 16 (1961b)
EOO: 22,041.629 km ². AOO: 32 km ². Evaluation of IUCN: Near Threatened.
Eugenia michoacanensis occurs only in Mexico, between the states of Colima, Jalisco and Michoacán, a physiographic region known as “Sierra Madre del Sur” from 180 to 1,180 m elev. The estimated extent of occurrence (EOO) exceeds the thresholds for a threatened category under the criterion B, whist the estimated area of occupancy (AOO) falls into the thresholds of Endangered category. However, it would probably exceed the thresholds of this category if the remaining habitat available is taken in account. There are up to eight known locations, based on eight records found in the Dry Tropical Forest to the Humid Tropical Forest biomes, all of them have ongoing threats. The current state of its habitat is under low threat of ecological degradation (CONABIO 2018) and it is in the vicinity of the “Sierra de Manantlán Biosphere Reserve”, in Jalisco and in the Costa Sur region of the same state (Graf-Montero et al. 2015). Considering that Eugenia michoacanensis almost qualifies for the Vulnerable category under the criterion B, but it is not possible to infer a continuing decline or extreme fluctuations, then it is rated here as Near Threatened (NT) as it meets the criteria B1a+B2b.
Specimens examined:— MEXICO. Colima: McVaugh 15797 (MEXU!); Jalisco: McVaugh 15973 (MEXU!); Michoacán: Soto et al. 11264 (MEXU!).
description: Published as part of Uc Gala, Victor C., Valdemarin, Karinne Sampaio, Lucas, Eve, Negrão, Raquel & Mazine, Fiorella F., 2023, Eugenia (Myrtaceae) from Mexico: checklist, distribution, and conservation assessments, pp. 99-140 in Phytotaxa 583 (2) on pages 116-117, DOI: 10.11646/phytotaxa.583.2.1, http://zenodo.org/record/7609258
Eugenia mozomboensis P. E. Sanchez, Phytologia
Creators: name: Uc Gala, Victor C.
name: Valdemarin, Karinne Sampaio
name: Lucas, Eve
name: Negrão, Raquel
name: Mazine, Fiorella F.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Myrtales
Myrtaceae
Eugenia
Eugenia mozomboensis

description: 45. * Eugenia mozomboensis P. E. Sánchez, Phytologia 81: 126 (1986)
EOO: 5,083.443 km ². AOO: 12 km ². Evaluation of IUCN: Endangered.
Eugenia mozomboensis has a distribution known only in the states of Veracruz and Hidalgo, occurring in the remnants of Humid Tropical Forest and Humid Montane Forest. The estimated extent of occurrence (EOO) falls within the thresholds of Endangered and Vulnerable categories under the criterion B, whilst the estimated area of occupancy (AOO) falls into the thresholds of Endangered category. Three collection records were found, two in Veracruz and one for Hidalgo, representing two different locations and all of them have ongoing threats. The habitat is impacted by anthropic activity, such as agriculture, extraction of miners and native forests, in addition to urban growth (CONABIO 2018) from which is inferred a continuing decline of habitat quality. Taking a precautionary approach, Eugenia mozomboensis is classified as Endangered (EN) considering that it is closer the thresholds for Endangered category than Vulnerable (VU), based on its estimated extent of occurrence and number of locations (less than 5). Therefore, it meets the criteria B1ab(iii)+B2ab(iii).
Specimens examined:— MEXICO. Hidalgo: Blanco 1549 (MEXU!); Veracruz: Castillo-Campos et al. 16008 (MEXU!).
description: Published as part of Uc Gala, Victor C., Valdemarin, Karinne Sampaio, Lucas, Eve, Negrão, Raquel & Mazine, Fiorella F., 2023, Eugenia (Myrtaceae) from Mexico: checklist, distribution, and conservation assessments, pp. 99-140 in Phytotaxa 583 (2) on page 117, DOI: 10.11646/phytotaxa.583.2.1, http://zenodo.org/record/7609258
Cuanta Dworakowska 1993
Creators: name: Jiao, Meng
name: Yang, Maofa
name: Yan, Bin
name: Yu, Xiaofei
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Cicadellidae
Cuanta

description: Cuanta Dworakowska, 1993
China (Jiangxi, Shanxi, Sichuan, Zhejiang)
description: Published as part of Jiao, Meng, Yang, Maofa, Yan, Bin & Yu, Xiaofei, 2024, A new genus of tribe Dikraneurini (Hemiptera: Cicadellidae: Typhlocybinae) from China based on a new species and genus checklist from China provided, pp. 135-140 in Zootaxa 5543 (1) on page 137, DOI: 10.11646/zootaxa.5543.1.8, http://zenodo.org/record/14385838
Additional file 1: of Antimicrobial activity of some plant materials used in Armenian traditional medicine
Creators: name: Ginovyan, Mikayel
name: Petrosyan, Margarit
name: Trchounian, Armen
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Plant Biology
subject: 60506 Virology

description: Table S1. The list of initially tested 28 wild plant species with common names, family names, tested parts and traditional uses in Armenian folk medicine. Table S2. Antibacterial and anti-yeast activity of crude extracts of tested 28 wild plant species determined by agar well diffusion assay. (DOCX 47Â kb)
Additional file 8: Table S3. of
                     De novo sequencing and comparative transcriptome analysis of the male and hermaphroditic flowers provide insights into the regulation of flower formation in andromonoecious taihangia rupestris
Creators: name: Weiguo Li
name: Lihui Zhang
name: Ding, Zhan
name: Guodong Wang
name: Yandi Zhang
name: Hongmei Gong
name: Tianjun Chang
name: Yanwen Zhang
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Plant Biology
subject: Computational Biology

description: Taihangia MADS-box gene names and attributes. (DOCX 17 kb)
Additional file 8: Table S3. of
                     De novo sequencing and comparative transcriptome analysis of the male and hermaphroditic flowers provide insights into the regulation of flower formation in andromonoecious Taihangia rupestris
Creators: name: Weiguo Li
name: Lihui Zhang
name: Ding, Zhan
name: Guodong Wang
name: Yandi Zhang
name: Hongmei Gong
name: Tianjun Chang
name: Yanwen Zhang
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Plant Biology
subject: Computational Biology

description: Taihangia MADS-box gene names and attributes. (DOCX 17 kb)
Additional file 10 of Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models
Creators: name: Bloom, Jesse
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Cell Biology
subject: Molecular Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Site-specific selection on HA inferred with the experimentally informed models. This figure is equivalent to Fig. 4 but for HA. (PDF 282 kb)
Neotrombicula (Neotrombicula) varians
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Prostigmata
Trombiculidae
Neotrombicula
Neotrombicula varians

description: Neotrombicula (Neotrombicula) varians (Brennan and Wharton, 1950):
NEA
Trombicula (Neotrombicula) varians Brennan and Wharton, 1950
Neotrombicula (Neotrombicula) varians, Vercammen-Grandjean 1965d [microti group]
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 170, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Eugenia naraveana Chazaro & Franco-Gutierrez, Phytotaxa
Creators: name: Uc Gala, Victor C.
name: Valdemarin, Karinne Sampaio
name: Lucas, Eve
name: Negrão, Raquel
name: Mazine, Fiorella F.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Myrtales
Myrtaceae
Eugenia
Eugenia naraveana

description: 46. * Eugenia naraveana Cházaro & Franco-Gutiérrez, Phytotaxa 286(4): 292 (2016)
EOO: 0 km². AOO: 4 km ². Evaluation of IUCN: Critically Endangered.
Eugenia naraveana is known only in the vicinity of the “Cofre de Perote” volcano hills in Veracruz, growing in the Humid Montane Forest, with only the type of collection as the only record, being found from 2,100 to 2,600 m elev. The estimated extent of occurrence (EOO) and area of occupancy (AOO) fall into the Critically Endangered category, under the criterion B. The habitat is highly impacted by agricultural activity and the extraction of native forest, but there have been efforts to restore vegetation since 2008 in the region (CONABIO 2018, Vázquez et al. 2014). In addition, as an interesting data, there are numerous research describing the importance of the floristic biodiversity of this region as it contains ca. 1,500 vascular plants (Castillo-Campos et al. 2009, Sánchez-Vindas 1990, Rzedowski 1978, Vázquez et al. 2014). Regarding its restricted distribution related to only one location and an inferred continuing decline of habitat, Eugenia naraveana is here classified as Critically Endangered (CR), as it meets the criterion B2ab (iii). Further field surveys and information on population size, local threats and habitat trends are recommended, as well as monitoring.
Specimen examined:— MEXICO. Veracruz: A. Francisco 110 (XAL).
description: Published as part of Uc Gala, Victor C., Valdemarin, Karinne Sampaio, Lucas, Eve, Negrão, Raquel & Mazine, Fiorella F., 2023, Eugenia (Myrtaceae) from Mexico: checklist, distribution, and conservation assessments, pp. 99-140 in Phytotaxa 583 (2) on page 117, DOI: 10.11646/phytotaxa.583.2.1, http://zenodo.org/record/7609258
Additional file 1: Table S1. of Genome-wide expression profiling in muscle and subcutaneous fat of lambs in response to the intake of concentrate supplemented with vitamin E
Creators: name: Gonzรกlez-Calvo, Laura
name: Dervishi, Elda
name: Joy, Margalida
name: Sarto, Pilar
name: Martin-Hernandez, Roberto
name: Serrano, Magdalena
name: Ordovรกs, Jose
name: Calvo, Jorge
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Plant Biology

description: The significant genes identified by SAM in VE vs. CON contrast. (DOCX 62 kb)
More than a rate: Measurement of Employee retention strategy as a catalyzer of organizational performance in the Medical Industry
Creators: name: Fatima Zahrae LAKHLIFI
name: Mohammed ABDELLAOUI
Publisher: name: Zenodo
Year: 2024

description: This article explores the rate of the employee retention strategy impact on organizational performance in the medical industry, a sector often disregarded as an industrial field. Morocco's industrial policy 2023-2030 emphasizes the importance of human resources in industrial strategies, but few research studies focus on retention in the medical sector. We therefore carried out a quantitative research based on a questionnaire distributed to healthcare professionals in the Fes-Meknes region, including clinics, radiology centers and analysis laboratories, and we collected 357 responses on which we based our analysis. Multiple linear regression was applied to assess the influence of explanatory variables (such as overall satisfaction and retention rate) on organizational performance. The results show that the model explains around 70% of the variance in strategic performance, indicating that employee retention and satisfaction play a significant role. However, additional factors, such as infrastructure and leadership, deserve to be explored to obtain a complete view of organizational performance in this sector.
Eugenia nigrita Lundell, Wrightia
Creators: name: Uc Gala, Victor C.
name: Valdemarin, Karinne Sampaio
name: Lucas, Eve
name: Negrão, Raquel
name: Mazine, Fiorella F.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Myrtales
Myrtaceae
Eugenia
Eugenia nigrita

description: 47. * Eugenia nigrita Lundell, Wrightia 3: 16 (1961b)
EOO: 11,455.625 km ². AOO: 20 km ². Evaluation of IUCN: Near Threatened.
Eugenia nigrita has a restricted distribution only in the state of Chiapas, with seven collection records. The species occurs in the Humid Tropical Forest and Humid Montane Forest biomes, from 226 to 2926 m elev. The estimated extent of occurrence (EOO) falls within the thresholds of Vulnerable category, whilst the estimated area of occupancy falls within the thresholds of Endangered category under the criterion B. However, it would probably exceed the thresholds of this category if the remaining habitat available is taken in account. There are only up to five known locations and all of them have ongoing threats. The habitat is in a good state of conservation since it occurs in two ecological protection reserves relevant to the conservation and scientific study of Mexican biodiversity such as the “Reserva de la Biosfera La Sepultura”, and the “Reserva de la Biosfera Montes Azules” (CONABIO 2018, INE-SEMARNAP 1999c, INE-SEMARNAP 2000a). However, since there is not available information to infer a continuing decline or extreme fluctuation, and its status is dependent of protect areas, Eugenia nigrita is classified here as Near Threatened (NT), as it meets the criteria B1a+B2a. It is worth mentioning that the last collection was made in 1999, therefore, efforts for new collections and information on threats and habitat trends must be made to confirm its status.
Specimen examined:— MEXICO. Chiapas: Breedlove & Thorne 21107 (MEXU!).
description: Published as part of Uc Gala, Victor C., Valdemarin, Karinne Sampaio, Lucas, Eve, Negrão, Raquel & Mazine, Fiorella F., 2023, Eugenia (Myrtaceae) from Mexico: checklist, distribution, and conservation assessments, pp. 99-140 in Phytotaxa 583 (2) on pages 117-118, DOI: 10.11646/phytotaxa.583.2.1, http://zenodo.org/record/7609258
Dicraneurula Vilbaste 1968
Creators: name: Jiao, Meng
name: Yang, Maofa
name: Yan, Bin
name: Yu, Xiaofei
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Cicadellidae
Dicraneurula

description: Dicraneurula Vilbaste, 1968
China (Shanxi)
description: Published as part of Jiao, Meng, Yang, Maofa, Yan, Bin & Yu, Xiaofei, 2024, A new genus of tribe Dikraneurini (Hemiptera: Cicadellidae: Typhlocybinae) from China based on a new species and genus checklist from China provided, pp. 135-140 in Zootaxa 5543 (1) on page 137, DOI: 10.11646/zootaxa.5543.1.8, http://zenodo.org/record/14385838
Additional file 17 of Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models
Creators: name: Bloom, Jesse
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified

description: The results of the d N/d S analysis are qualitatively similar when using HyPhy rather than phydms. This figure shows the same data as that in Fig. 3 a, but also includes the results of a d N/d S analysis using the fixed effects likelihood (FEL) method implemented in HyPhy [7]. The results are not identical to the phydms GY94 results because the HyPhy implementation differs slightly from the phydms implementation: HyPhy performs the d N/d S analysis using the substitution model of [102] rather than GY94, and infers a neighbor-joining tree with a nucleotide substitution model rather than a maximum-likelihood tree using a codon model. Nonetheless, the results of the HyPhy FEL analysis are highly similar to those of the phydms GY94 analysis, both in terms of the overall distribution of results and in terms of the values for the specific indicated sites. The point markers represent the same sites as in Fig. 3. (PDF 236 kb)
Additional file 5 Figure S3. of
                     De novo sequencing and comparative transcriptome analysis of the male and hermaphroditic flowers provide insights into the regulation of flower formation in andromonoecious taihangia rupestris
Creators: name: Weiguo Li
name: Lihui Zhang
name: Ding, Zhan
name: Guodong Wang
name: Yandi Zhang
name: Hongmei Gong
name: Tianjun Chang
name: Yanwen Zhang
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Characteristics of the homology search of Taihangia unigenes against the NR database. (PDF 136 kb)
Plagiostriata xiapuensis W. Y. Zhang, Z. Wang, Y. H. Gao & C. P. Chen 2022, sp. nov.
Creators: name: Zhang, Weiyu
name: Wang, Zhen
name: Zhuo, Suqing
name: Gao, Yahui
name: Li, Xuesong
name: Liang, Junrong
name: Chen, Changping
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Chromista
Ochrophyta
Bacillariophyceae
Fragilariales
Fragilariaceae
Plagiostriata
Plagiostriata xiapuensis

description: Plagiostriata xiapuensis W.Y.Zhang, Z.Wang, Y.H.Gao & C.P.Chen sp. nov. (LM Figs 1–4, SEM Figs 5–12)
Description:—LM: Cells solitary. Frustules rectangular in girdle view. Valves linear elliptical to elliptical with obtusely rounded to cuneate apices. Valve dimensions: length 4.9~8.2 μm, breadth 1.8~2.6 μm (Figs 1–4). The sternum and striae are invisible.
SEM: Valve face flat. The ventral mantle is deep and the dorsal mantle is wide (Figs 5–9). Uniseriate striae along both sides of sternum alternately distributed or oppositely distributed, arranged in parallel, 32~ 34 in 10 μm (Figs 9, 12). Virgae wider than vimines, merging with sternum at valve centre. Sternum indistinct. Areolae round, occluded by simple volae (Fig. 10). Rimoportula located within a stria situated at valve centre, few valves with no rimoportulae near centre (Figs 5–7, 9). Externally, the rimoportula appears as a slit-like opening that is elongated in parallel with striae. Internally, rimoportula are also simple, with slight siliceous thickenings (Fig. 11). Two semilunar pores are observed at both poles, which are more like fissures, forming simple apical pore fields (Figs 8, 10).
Type:— CHINa. Fujian = Province, Xiapu County, Ningde City: Dajing Beach, sand sample from intertidal, low tide area, 26°42 ‘34 “N, 120°7’ 17” E, May 2018, Z. Wang (holotype slide N202101! = Fig. 1; isotype Slide NI 202101, both at School of Life Sciences, Xiamen University, Xiamen, People’s Republic of China).
Etymology:—The epithet “ xiapuensis ” derives from the site where the specimen was found.
description: Published as part of Zhang, Weiyu, Wang, Zhen, Zhuo, Suqing, Gao, Yahui, Li, Xuesong, Liang, Junrong & Chen, Changping, 2022, Two new species of Plagiostriata (Bacillariophyaceae) from sand sediments of southern China, pp. 87-93 in Phytotaxa 556 (1) on page 88, DOI: 10.11646/phytotaxa.556.1.7, http://zenodo.org/record/6952134
Additional file 1: of Antimicrobial activity of some plant materials used in Armenian traditional medicine
Creators: name: Ginovyan, Mikayel
name: Petrosyan, Margarit
name: Trchounian, Armen
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Plant Biology
subject: Virology

description: Table S1. The list of initially tested 28 wild plant species with common names, family names, tested parts and traditional uses in Armenian folk medicine. Table S2. Antibacterial and anti-yeast activity of crude extracts of tested 28 wild plant species determined by agar well diffusion assay. (DOCX 47Â kb)
Additional file 2: of Community-based health care is an essential component of a resilient health system: evidence from Ebola outbreak in Liberia
Creators: name: Siekmans, Kendra
name: Sohani, Salim
name: Tamba Boima
name: Koffa, Florence
name: Basil, Luay
name: SaĂŻd Laaziz
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Questionnaire for gCHVs working in iCCM during the Ebola crisis. This is a copy of the survey questionnaire administered to CHWs. (DOCX 25Â kb)
Additional file 5 Figure S3. of
                     De novo sequencing and comparative transcriptome analysis of the male and hermaphroditic flowers provide insights into the regulation of flower formation in andromonoecious Taihangia rupestris
Creators: name: Weiguo Li
name: Lihui Zhang
name: Ding, Zhan
name: Guodong Wang
name: Yandi Zhang
name: Hongmei Gong
name: Tianjun Chang
name: Yanwen Zhang
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Characteristics of the homology search of Taihangia unigenes against the NR database. (PDF 136 kb)
Eugenia oaxacana O. Berg, Linnaea
Creators: name: Uc Gala, Victor C.
name: Valdemarin, Karinne Sampaio
name: Lucas, Eve
name: Negrão, Raquel
name: Mazine, Fiorella F.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Myrtales
Myrtaceae
Eugenia
Eugenia oaxacana

description: 48. * Eugenia oaxacana O.Berg, Linnaea 30: 683 (1861)
EOO: 4 km ². AOO: 4 km ². Evaluation of IUCN: Critically Endangered.
Eugenia oaxacana has a very restricted distribution, known for only two records in the municipality of San Felipe Usila, belonging to the state of Oaxaca in southeastern Mexico. This species occurs in higher areas of the Humid Montane Forest. The estimated extent of occurrence (EOO) and area of occupancy (AOO) fall within the thresholds of the Critically Endangered category under the criterion B. There is only one known location. The habitat of the species is under potential threats that produce the deterioration of the surface and quality of the habitat, due to the change of land use, agrarian conflicts for land tenure, small-scale agriculture, and livestock, as well as renewable energy projects. Despite many studies and analysis of the biological wealth of the Chinantla region, there are no actions for the implementation of the creation of protected natural areas. The region is well collected due to its high biodiversity of species (Rzedowski 1978, 1991, McVaugh 1963, Toledo 1988, Lorence & Mendoza 1989, Villaseñor & Ortiz 2014, Villaseñor 2016, Meave et al. 2017). Eugenia oaxacana is known only from specimens within the type locality, the last date of collection of the species is from 1842, and there are threats in the area and is classified here as Critically Endangered (CR), as it meets the criteria B1ab(iii)+B2ab(iii). To confirm if this species could be also tagged as “Possibly Extinct” the documentation must summarize the lines of evidence for and against extinction (including population size, local threats, and habitat trends), describing the surveys carried out to search for the species and specifying the date and relevant details of the last confirmed record (IUCN 2020). According to the IUCN Standards and Petitions Committee (2019) the status of all taxa assigned ‘Possibly Extinct’ tags should preferably be reviewed at five-year intervals.
Specimen examined:— MEXICO. Oaxaca: Liebman 99 (C).
description: Published as part of Uc Gala, Victor C., Valdemarin, Karinne Sampaio, Lucas, Eve, Negrão, Raquel & Mazine, Fiorella F., 2023, Eugenia (Myrtaceae) from Mexico: checklist, distribution, and conservation assessments, pp. 99-140 in Phytotaxa 583 (2) on page 118, DOI: 10.11646/phytotaxa.583.2.1, http://zenodo.org/record/7609258
Neotrombicula (Neotrombicula) vernalis
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Prostigmata
Trombiculidae
Neotrombicula
Neotrombicula vernalis

description: Neotrombicula (Neotrombicula) vernalis (Willmann, 1942):
PAL
Trombicula (Eutrombicula) vernalis Willmann, 1942
Trombicula (Trombicula) vernalis, Wharton & Fuller 1952
Neotrombicula autumnalis vernalis, Kepka 1964a
Neotrombicula (Neotrombicula) autumnalis vernalis, Kolebinova 1969
Neotrombicula (Neotrombicula) vernalis, Kudryashova 1988b
Syn.: Neotrombicula kermani Kudryashova, 1977; Shamsi et al. 2020
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 170, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
On the influence of pressure drop and fluid-structure interaction on the hemodynamics of arteriovenous fistula
Creators: name: Moran, Daniel T.
Publisher: name: University of Limerick
Year: 2025
Subjects: classificationCode: 40
subject: Engineering

description: Chronic kidney disease (CKD) is a prevalent global health concern, affecting millions worldwide and often progressing to end-stage renal disease (ESRD), necessitating interventions like hemodialysis (HD). Arteriovenous fistulas (AVFs) are commonly created to facilitate HD due to their advantages over alternative methods. However, a significant percentage of AVFs fail to mature successfully, leading to complications. Understanding the hemodynamic factors influencing AVF outcomes is crucial, particularly in addressing issues like stenosis, intimal hyperplasia (IH), disturbed shear stress and negative remodelling.This research aims to bridge existing gaps in the numerical modelling of AVF hemodynamics, focusing on three critical areas: accurately simulating the pressure drop across the AVF anastomosis, the impact of compliance on wall shear stress (WSS)-based parameters, and the time-dependant impact of arterial flow conditions on venous material properties. The thesis includes an extensive review of existing research on AVF hemodynamics, numerical modelling techniques, and experimental methodologies, setting the stage for subsequent investigations. It validates the numerical approach through ex-vivo displacement data analysis and highlights previous validation studies adopting similar numerical methodologies, thus appropriately representing real-world conditions. The pressure distribution across AVFs at the time of surgery is assessed, revealing discrepancies between in-vivo measurements and numerical simulations. Insights gained highlight the need for improved modelling techniques to replicate realistic pressure drops accurately. Furthermore, a comparative evaluation of patient-specific computational models was conducted, comparing conventional Computational Fluid Dynamics with Fluid-Structure Interaction simulations. Highlighting the importance of personalised assessments and refined computational modelling techniques.This research also explores ex-vivo perfusion of vascular tissue as a means of analysing morphometric changes induced by controlled hemodynamics. This work underscores the time-dependent nature of venous tissue adaptation, advocating for dynamic material models in AVF simulations to accurately capture tissue responses over extended durations.Overall, this research contributes to our understanding of AVF hemodynamics and venous tissues material properties response to increased flow and pressure. Identified gaps and future research directions aim to advance the field of AVF characterisation and treatment, ultimately improving outcomes for patients with CKD and ESRD.
Additional file 7 of Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models
Creators: name: Bloom, Jesse
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: This figure shows the distribution over sites of the Kullback-Leibler divergence of the experimentally measured amino-acid preferences from the alignment frequencies. Note that the Kullback-Leibler divergence does not take phylogeny into account, and so will be confounded the incomplete sampling of potentially tolerated amino acids by natural evolution. The distribution of per-site Kullback-Leibler divergences shown here lacks the biologically sensible features of the differential selection computed in a phylogenetic framework and shown in Fig. 3 b. For instance, Gal4 has many sites with very high Kullback-Leibler divergence even though on biological grounds we expect it to be evolving mostly in the absence of positive selection. In contrast, Î˛-lactamase and NP tend to have lower Kullback-Leibler divergence even though we know that they evolve under selection for adaptive mutations that confer drug resistance or immune escape. The biologically unreasonable distribution of Kullback-Leibler divergences shown in this plot are probably due to the failure of the Kullback-Leibler divergence to account for phylogeny, which may in turn make the results highly sensitive to uneven phylogenetic sampling and differences in the total sequence divergence spanned by the alignments (see Table 1). The Kullback-Leibler divergence was computed using logarithms taken to the base two. (PDF 86 kb)
MOESM1 of Engineering vesicle trafficking improves the extracellular activity and surface display efficiency of cellulases in Saccharomyces cerevisiae
Creators: name: Hongting Tang
name: Meihui Song
name: He, Yao
name: Jiajing Wang
name: Shenghuan Wang
name: Shen, Yu
name: Hou, Jin
name: Xiaoming Bao
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Additional file 1: Figure S1. Transcription level of the vesicle trafficking components and heterologous proteins. Figure S2. The percentage of cell activity of BGL1 (cell activity/ (cell activity + extracellular activity)) in the surface-displayed BGL1 and secreted BGL1 strains. Figure S3. The copy number of plasmids expressing heterologous cellulase genes and vesicle trafficking genes, respectively. Table S1. Strains and plasmids used in this study. Table S2. The primers used in this study.
Additional file 7 of Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models
Creators: name: Bloom, Jesse
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: This figure shows the distribution over sites of the Kullback-Leibler divergence of the experimentally measured amino-acid preferences from the alignment frequencies. Note that the Kullback-Leibler divergence does not take phylogeny into account, and so will be confounded the incomplete sampling of potentially tolerated amino acids by natural evolution. The distribution of per-site Kullback-Leibler divergences shown here lacks the biologically sensible features of the differential selection computed in a phylogenetic framework and shown in Fig. 3 b. For instance, Gal4 has many sites with very high Kullback-Leibler divergence even though on biological grounds we expect it to be evolving mostly in the absence of positive selection. In contrast, Î˛-lactamase and NP tend to have lower Kullback-Leibler divergence even though we know that they evolve under selection for adaptive mutations that confer drug resistance or immune escape. The biologically unreasonable distribution of Kullback-Leibler divergences shown in this plot are probably due to the failure of the Kullback-Leibler divergence to account for phylogeny, which may in turn make the results highly sensitive to uneven phylogenetic sampling and differences in the total sequence divergence spanned by the alignments (see Table 1). The Kullback-Leibler divergence was computed using logarithms taken to the base two. (PDF 86 kb)
Dikraneura Hardy 1850
Creators: name: Jiao, Meng
name: Yang, Maofa
name: Yan, Bin
name: Yu, Xiaofei
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Cicadellidae
Dikraneura

description: Dikraneura Hardy, 1850
China (Taiwan)
description: Published as part of Jiao, Meng, Yang, Maofa, Yan, Bin & Yu, Xiaofei, 2024, A new genus of tribe Dikraneurini (Hemiptera: Cicadellidae: Typhlocybinae) from China based on a new species and genus checklist from China provided, pp. 135-140 in Zootaxa 5543 (1) on page 137, DOI: 10.11646/zootaxa.5543.1.8, http://zenodo.org/record/14385838
Additional file 1: Figure S1. of Enhancing the thermostability of Îą-L-rhamnosidase from Aspergillus terreus and the enzymatic conversion of rutin to isoquercitrin by adding sorbitol
Creators: name: Ge, Lin
name: Chen, Anna
name: Jianjun Pei
name: Linguo Zhao
name: Xianying Fang
name: Ding, Gang
name: Zhenzhong Wang
name: Xiao, Wei
name: Tang, Feng
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology

description: The sequence alignment of Rha and MRha. (DOCX 1901Â kb)
Additional file 5 of Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models
Creators: name: Bloom, Jesse
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Plant Biology

description: Simulations validate the statistical approach used to identify diversifying selection. Using the actual ExpCM parameters for NP in Table 2 except fixing ω=1 for all sites except for those selected to be simulated under diversifying selection, I used pyvolve [46] to simulate 40 alignments along the tree inferred from the actual NP sequences. For each simulation, I randomly selected 5 sites to place under diversifying selection, with ω r values ranging from 1 (no diversifying selection) to 30 (very strong diversifying selection). I then analyzed the data using phydms in the same way that the actual data were analyzed. Sites were called as being under significant diversifying selection using the false discovery rates (FDRs) indicated in the figure. The top panel shows that ExpCM greatly outperformed the FEL-like GY94 method at identifying true positives. The bottom panel shows that the Benjamini-Hocbherg [28] procedure effectively controls the fraction of false discoveries among the sites called as being under diversifying selection using ExpCM. The Benjamini-Hochberg procedure may be slightly too conservative for ExpCM (for every value of ω r the actual rate of false discoveries is slightly below the FDR), but the differences seem modest. The computer code to perform these simulations is in Additional file 17. (PDF 150 kb)
Eugenia octopleura Krug & Urban, Bot. Jahrb. Syst.
Creators: name: Uc Gala, Victor C.
name: Valdemarin, Karinne Sampaio
name: Lucas, Eve
name: Negrão, Raquel
name: Mazine, Fiorella F.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Myrtales
Myrtaceae
Eugenia
Eugenia octopleura

description: 49. Eugenia octopleura Krug & Urban, Bot. Jahrb. Syst. 19: 653 (1895)
EOO: 1,448,833.845 km ². AOO: 72 km ². Evaluation of IUCN: Least Concern.
Eugenia octopleura has a wide distribution that ranges from the Gulf and Southeast Mexico region, Central America, to Venezuela, including the Antilles (WCSP 2020). The estimated extent of occurrence (EOO) and the area of occupancy (AOO) based on the potential habitat available exceed the thresholds for a threatened category under the criterion B. There are more than 10 known locations based on 22 collections, from Mexico to Venezuela. Four records were found for Mexico, with three records in Chiapas and one in Hidalgo but on the continent. This species is one of the most well distributed Eugenia species. The species occurs mainly in the Humid Tropical Forest and the Humid Montane Forest from 226 to 2,070 m elev. The habitat is in a good state of conservation; in the areas of tropical occurrence, in two biodiversity conservation areas in Chiapas which are the “Monumento Natural Bonampak” and the “Monumento Natural Yaxchilán” with a humid tropical forest that is part of the “Mesoamerican Biological Corridor”. This corridor connects Mexican biological reserves with those of Central America, contributing to the continuity of biological interactions of species that occur in this region (CONABIO 2018, CCAD 1992, Corrales & Zuñiga 2001, Vázquez et al. 2011). Therefore, Eugenia octopleura is classified here as Least Concern (LC).
Specimens examined:— MEXICO. Chiapas: Aguilar et al. 8927 (MEXU!); Hidalgo: Rzedowski 28683 (MEXU!).
description: Published as part of Uc Gala, Victor C., Valdemarin, Karinne Sampaio, Lucas, Eve, Negrão, Raquel & Mazine, Fiorella F., 2023, Eugenia (Myrtaceae) from Mexico: checklist, distribution, and conservation assessments, pp. 99-140 in Phytotaxa 583 (2) on page 118, DOI: 10.11646/phytotaxa.583.2.1, http://zenodo.org/record/7609258