Additional file 1 of The genetics of resilience and its relationships with egg production traits and antibody traits in chickens
Creators: name: Berghof, Tom V. L.
name: Bedere, Nicolas
name: Peeters, Katrijn
name: Poppe, Marieke
name: Visscher, Jeroen
name: Mulder, Han A.
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Plant Biology

description: Additional file 1: Table S1. Estimates of genetic (below the diagonal) and phenotypic (above the diagonal, italic) correlations with standard errors (in parentheses) between the resilience indicators ln(variance), skewness, and autocorrelation based on average batch production for the same life periods, but with different intervals for White. Table S2. Estimates of genetic (below the diagonal) and phenotypic (above the diagonal, italic) correlations with standard errors (in parentheses) between the resilience indicators ln(variance), skewness, and autocorrelation based on average batch production for the same life periods, but with different intervals for Brown. Table S3. Estimates of genetic (below the diagonal) and phenotypic (above the diagonal, italic) correlations with standard errors (in parentheses) between the resilience indicators ln(variance), skewness, and autocorrelation based on average batch production for 1-week-intervals, but for different life periods for White. Table S4. Estimates of genetic (below the diagonal) and phenotypic (above the diagonal, italic) correlations with standard errors (in parentheses) between the resilience indicators ln(variance), skewness, and autocorrelation based on average batch production for 1-week-intervals, but for different life periods for Brown. Table S5. Estimates of genetic (below the diagonal) and phenotypic (above the diagonal, italic) correlations with standard errors (in parentheses) between the resilience indicators ln(variance), skewness, and autocorrelation based on average batch production for the same life periods with 1-week-intervals for White. Table S6. Estimates of genetic (below the diagonal) and phenotypic (above the diagonal, italic) correlations with standard errors (in parentheses) between the resilience indicators ln(variance), skewness, and autocorrelation based on average batch production for the same life periods with 1-week-intervals for Brown. Table S7. Estimates of genetic and phenotypic (italic) correlations with standard errors (in parentheses) between the resilience indicators ln(variance), skewness, and autocorrelation based on average batch production and expected individual production for the same life periods with 1-week-intervals for White and Brown. Table S8. Estimates of genetic characteristics for egg production traits: variance components ( $${\sigma }^{2}$$ σ 2 ), heritability ( $${h}^{2}$$ h 2 ), and maternal environmental effect ( $${m}^{2}$$ m 2 ) for the full production cycle (i.e. all eggs between start and end), the early production cycle (i.e. between start and 25 weeks of age), the 'traditional' production cycle (i.e. between 25 and 83 weeks of age), and the time period after the 'traditional' production cycle (i.e. between 83 weeks of age and end) with standard errors (SE) for White and Brown. Table S9. Estimates of genetic (below the diagonal) and phenotypic (above the diagonal, italic) correlations with standard errors (in parentheses) between egg production traits for the full production cycle (i.e. all eggs between start and end), the early production cycle (i.e. between start and 25 weeks of age), the 'traditional' production cycle (i.e. between 25 and 83 weeks of age), and the time period after the 'traditional' production cycle (i.e. between 83 weeks of age and end) for White. Table S10. Estimates of genetic (below the diagonal) and phenotypic (above the diagonal, italic) correlations with standard errors (in parentheses) between egg production traits for the full production cycle (i.e. all eggs between start and end), the early production cycle (i.e. between start and 25 weeks of age), the 'traditional' production cycle (i.e. between 25 and 83 weeks of age), and the time period after the 'traditional' production cycle (i.e. between 83 weeks of age and end) for Brown. Table S11. Estimates of genetic and phenotypic (italic) correlations with standard errors (in parentheses) between the resilience indicators ln(variance), skewness, and autocorrelation based on average batch production for the same life periods with 1-week-intervals and egg production traits for the full production cycle (i.e. all eggs between start and end), the early production cycle (i.e. between start and 25 weeks of age), the 'traditional' production cycle (i.e. between 25 and 83 weeks of age), and the time period after the 'traditional' production cycle (i.e. between 83 weeks of age and end) for White. Table S12. Estimates of genetic and phenotypic (italic) correlations with standard errors (in parentheses) between the resilience indicators ln(variance), skewness, and autocorrelation based on average batch production for the same life periods with 1-week-intervals and egg production traits for the full production cycle (i.e. all eggs between start and end), the early production cycle (i.e. between start and 25 weeks of age), the 'traditional' production cycle (i.e. between 25 and 83 weeks of age), and the time period after the 'traditional' production cycle (i.e. between 83 weeks of age and end) for Brown. Table S13. Estimates of genetic characteristics for the antibody traits: variance components ( $${\sigma }^{2}$$ σ 2 ), heritability ( $${h}^{2}$$ h 2 ), and maternal environmental effect ( $${m}^{2}$$ m 2 ) of the antibody traits keyhole limpet hemocyanin (KLH)-binding IgM natural antibody titer and KLH-binding IgG natural antibody titer with standard errors (SE) for White and Brown. Table S14. Estimates of genetic (below the diagonal) and phenotypic (above the diagonal, italic) correlations with standard errors (in parentheses) between the antibody traits keyhole limpet hemocyanin (KLH)-binding IgM natural antibody titer and KLH-binding IgG natural antibody titer for White and Brown. Table S15. Estimates of genetic and phenotypic (italic) correlations with standard errors (in parentheses) of the resilience indicators ln(variance), skewness, and autocorrelation based on average batch production for the same life periods with 1-week-intervals and the antibody traits keyhole limpet hemocyanin (KLH)-binding IgM natural antibody titer and KLH-binding IgG natural antibody titer for White. Table S16. Estimates of genetic and phenotypic (italic) correlations with standard errors (in parentheses) of the resilience indicators ln(variance), skewness, and autocorrelation based on average batch production for the same life periods with 1-week-intervals and the antibody traits keyhole limpet hemocyanin (KLH)-binding IgM natural antibody titer and KLH-binding IgG natural antibody titer for Brown.