cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Orthomecyna keoniae Medeiros, sp. nov.
Creators: name: Medeiros, Matthew J
name: Adamski, David
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Crambidae
Orthomecyna
Orthomecyna keoniae

description: Orthomecyna keoniae Medeiros, sp. nov.
(Figs. 1.2 & 2.2)
Diagnosis. Orthomecyna Butler (1883) is endemic to the Hawaiian Islands. Orthomecyna keoniae is similar to O. metalycia Meyrick, a species from Hawaii Island, but the costal lobe of the valva in O. metalycia has two concave indentations near the sledgehammer-like distal process, while only one concave indentation is present in O. keoniae; O. keoniae with a more slender and tapering main lobe of the valva than in O. metalycia.
Description. Head: Vertex and frontoclypeus smooth, mottled brown and dusky brown. Labial palpi upturned, scales pale brown with dusky tips; maxillary palpi upturned, ca. 0.3x length of labial palpi. Ocelli present. Antennae ca. 0.6x length of forewing; dense, very short cilia present on ventral side of flagellomere. Proboscis brown.
Thorax: Tegula and mesonotum mottled light brown and brown. Legs mostly brown but with apical portion of each segment ringed with very pale brown. Forewing length = 10 mm (n = 1); ground color brown, with a mix of pale brown and darker brown scales, becoming darker near termen; a very faint transverse line present near proximal portion of discal cell; fringe brown. Hindwing brown, becoming dark brown along termen and anal margin.
Abdomen: Male genitalia (Fig 2.2): Uncus and gnathos slightly curved inwardly, both slender and tapering. Tegumen narrow, elongate. Costal lobe of valva completely separate from rest of valva, widening near apex to form a sledgehammer-like process. Main lobe of valva nearly the length of tegumen + uncus, slender and tapering, with several prominent setae near apex. Vinculum V-shaped. Phallus cylindrical near base; sclerite of phallus bifurcated at apex.
Female genitalia: Unknown.
Holotype 3: UNITED STATES: Hawaii: Kahoolawe: Kealaikahiki, Keana Keiki beach, 21 Oct 2008, M.J. Medeiros (genitalia slide 10A64) (BPBM).
Etymology. O. keoniae is named in honor of my father, Dr. John Medeiros. “Keoni” is a Hawaiian-language translation of “John” and O. keoniae means “John’s Orthomecyna ”. Dr. Medeiros is a prior resident of Paia, Hawaii, and a scientist himself who has encouraged my studies and been a role model for me.
Remarks. No new Orthomecyna species have been described since 1899 (Zimerman, 1958); fourteen species are previously described in this genus. Although O. keoniae is currently known from only one individual, the fact that it is from Kahoolawe, which is difficult to access and is undergoing environmental restoration, warrants its description.
description: Published as part of Medeiros, Matthew J & Adamski, David, 2012, Three new species of Hawaiian moths from Kahoolawe island (Lepidoptera: Crambidae & Coleophoridae), pp. 59-63 in Zootaxa 3341 on pages 61-62, DOI: 10.5281/zenodo.209937
Tamsica kawikae Medeiros, sp. nov.
Creators: name: Medeiros, Matthew J
name: Adamski, David
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Crambidae
Tamsica
Tamsica kawikae

description: Tamsica kawikae Medeiros, sp. nov.
(Figs. 1.3 & 2.3)
Diagnosis. Tamsica Zimmerman (1958) is endemic to the Hawaiian Islands. T. kawikae is similar to T. floricolans (Butler), a species occurring on Oahu, Molokai, and Lanai. T. kawikae has a more slender uncus and gnathos than T. floricolans.
Description. Head. Vertex and frontoclypeus somewhat roughly scaled, mottled light brown to brown or nearly black in some specimens. Labial palpi semi-porrect, maxiary palpi upturned, ca. 0.3x length of labial palpi. Ocelli present. Antennae ca. 0.7x length of forewing; dense, very short, piliform cilia on ventral side of flagellomere. Proboscis scaled proximally, very pale light brown.
Thorax: Tegula and mesonotum brown. Legs light brown to nearly black, with apical portion of each segment ringed in lighter scales. Forewing length = 4 - 5.5 mm (n = 17); ground color pale brown to dark brown, with faint transverse medial and antemedial lines present; a postmedial line terminating in a larger dark spot near the costal margin present in most specimens; several spots near ends of veins present along termen; fringe brown to light brown. Hindwing brown to light brown.
Abdomen: Male genitalia (Fig. 2.3): Uncus and gnathos both slender and ending in sharp, pointed apices, uncus with several setae ventrally. Tegumen cylindrical. Valvae simple and unornamented, broad and narrowing only slightly to a blunt apex, with only a small, triangular spur projecting dorsally from valva and several setae near apex. Vinculum rounded. Phallus cylindrical and slightly curved along entire length.
Female genitalia: Unknown.
Holotype 3: UNITED STATES: Hawaii: Kahoolawe: Hakioawa, D4 planting area, 19 Jul 2011, M.J. Medeiros (BPBM).
Paratypes 16 3: UNITED STATES: Hawaii: Kahoolawe: Hakioawa, D4 planting area, 19–20 Jul 2011, M.J. Medeiros (genitalia slides 11A05, 11A10, 11A17, & 11A20) (BPBM & UHIM).
Etymology. T. kawikae is named in honor of my brother, David Medeiros. “Kawika” is a phonetic Hawaiianlanguage translation of “David” and T. kawikae means “David's Tamsica ”. David, a linguist who has spent years studying the Hawaiian language, has not only helped me to properly name Lepidoptera over the years, but has been a cheerful and able field assistant on several collecting trips (including my first, in 2003) to the Hawaiian Islands.
Remarks. T. kawikae occurs in great numbers on Kahoolawe. Perkins (1913) noted of Tamsica moths in general, “They are able to flourish in the driest localities near the coast...” T. kawikae is the seventh species to be described from this genus.
description: Published as part of Medeiros, Matthew J & Adamski, David, 2012, Three new species of Hawaiian moths from Kahoolawe island (Lepidoptera: Crambidae & Coleophoridae), pp. 59-63 in Zootaxa 3341 on pages 62-63, DOI: 10.5281/zenodo.209937
Hydatothrips Karny 1913
Creators: name: Rachana, R. R.
name: Amarendra, B.
name: Vanitha, K.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Thysanoptera
Thripidae
Hydatothrips

description: Hydatothrips Karny
The members of this genus are predominantly bicoloured. The genus Hydatothrips can be distinguished from other genera of Sericothripinae by the available keys (Lima & Mound 2016a & b). Hydatothrips is characterized by the anterior margin of the metasternal plate with deep U- or V-shaped invagination.
description: Published as part of Rachana, R. R., Amarendra, B. & Vanitha, K., 2023, A new species of Hydatothrips (Thysanoptera, Thripidae) from India with one new record, pp. 589-594 in Zootaxa 5319 (4) on page 590, DOI: 10.11646/zootaxa.5319.4.9, http://zenodo.org/record/8221937
Additional file 7: Figure S4. of Intracellular Ca2+ and K+ concentration in Brassica oleracea leaf induces differential expression of transporter and stress-related genes
Creators: name: Jeongyeo Lee
name: Jungeun Kim
name: Jae-Pil Choi
name: MiYe Lee
name: Kim, Min
name: Lee, Young
name: Yoonkang Hur
name: Ill-Sup Nou
name: Park, Sang
name: Min, Sung
name: HyeRan Kim
Publisher: name: Figshare
Year: 2016
Subjects: subject: Cell Biology
subject: Molecular Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology
subject: Computational Biology

description: Selected up- or down-regulated genes based on increasing Ca2+ and K+ concentration in the three lines with three different leaf positions. (DOCX 169 kb)
Additional file 4: of Characterization of VHL missense mutations in sporadic clear cell renal cell carcinoma: hotspots, affected binding domains, functional impact on pVHL and therapeutic relevance
Creators: name: Razafinjatovo, Caroline
name: Bihr, Svenja
name: Mischo, Axel
name: Vogl, Ursula
name: Schmidinger, Manuela
name: Moch, Holger
name: Schraml, Peter
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Supplementary information on binding partners. (DOCX 63Â kb)
Additional file 1: Figure S1. of Intracellular Ca2+ and K+ concentration in Brassica oleracea leaf induces differential expression of transporter and stress-related genes
Creators: name: Jeongyeo Lee
name: Jungeun Kim
name: Jae-Pil Choi
name: MiYe Lee
name: Kim, Min
name: Lee, Young
name: Yoonkang Hur
name: Ill-Sup Nou
name: Park, Sang
name: Min, Sung
name: HyeRan Kim
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Experimental Brassica oleracea (tip-burn susceptible, tip-burn resistant, and kale) leaf and the accumulation of Ca2+ in epidermal cells (updated to Lee et al., 2013). (DOCX 744 kb)
Dendrothrips glynn Mound
Creators: name: Rachana, R. R.
name: Amarendra, B.
name: Vanitha, K.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Thysanoptera
Thripidae
Dendrothrips
Dendrothrips glynn

description: Dendrothrips glynn Mound
(Figs 16–25)
Described from Australia from tree flowers (Mound 1999), this species of Dendrothripinae is here recorded from India for the first time based on the following specimens: Tamil Nadu, Dindigal, Thadiyankudisai, 6 females, collected in yellow pan traps, 27.i.2017 (Gandhi Gracy R.).
Diagnosis: Head, pronotum and pterothorax light brown (Fig. 16), abdomen yellow with two pairs of small brown spots on tergites II–VII (Fig. 19); fore wing pale, with three short, transverse light brown bands, apex weakly shaded (Fig. 25). Head transverse, reticulate within ocellar triangle with internal markings; ocellar pair III outside ocellar triangle anterior to hind ocelli (Fig. 21). Antennae 7- segmented (Fig. 17). Pronotum irregularly reticulate with internal markings (Fig. 20). Metanotum reticulate with minute tubercles inside (Fig. 18). Abdominal tergites each with anterior reticulations and posterior longitudinal ridges; VIII with a few median slender microtrichia (Fig. 23). Sternites reticulate (Fig. 24).
description: Published as part of Rachana, R. R., Amarendra, B. & Vanitha, K., 2023, A new species of Hydatothrips (Thysanoptera, Thripidae) from India with one new record, pp. 589-594 in Zootaxa 5319 (4) on page 593, DOI: 10.11646/zootaxa.5319.4.9, http://zenodo.org/record/8221937
Additional file 2: Table S4. of Diagnosis, misdiagnosis, lucky guess, hearsay, and more: an ontological analysis
Creators: name: Hogan, William
name: Ceusters, Werner
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Computational Biology

description: Entities in Scenario 3: Incorrect diagnosis. Table S5. Additional temporal entities in Scenario 3: Incorrect diagnosis. Table S6. Relationships among particulars in Scenario 3: Incorrect diagnosis. (DOCX 88Â kb)
Additional file 1: of Mutation spectrum of the FZD-4, TSPAN12 AND ZNF408 genes in Indian FEVR patients
Creators: name: Ganeswara Musada
name: Syed, Hameed
name: Subhadra Jalali
name: Subhabrata Chakrabarti
name: Inderjeet Kaur
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Primer and Amplification Details for the Three Candidate genes. (DOCX 17 KB)
Additional file 1: of Expanding the clinical spectrum of COL1A1 mutations in different forms of glaucoma
Creators: name: Mauri, Lucia
name: Uebe, Steffen
name: Sticht, Heinrich
name: Vossmerbaeumer, Urs
name: Weisschuh, Nicole
name: Manfredini, Emanuela
name: Maselli, Edoardo
name: Mariacristina Patrosso
name: Weinreb, Robert
name: Penco, Silvana
name: AndrĂŠ Reis
name: Pasutto, Francesca
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: PCR Primers used for molecular screening of CYP1B1, MYOC, FOXC1, PITX2, PAX6 and COL1A1 genes. (DOCX 20Â kb)
Additional file 4: Table S10. of Diagnosis, misdiagnosis, lucky guess, hearsay, and more: an ontological analysis
Creators: name: Hogan, William
name: Ceusters, Werner
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Computational Biology

description: Entities in Scenario 5: Layperson’s justified inference. Table S11. Additional temporal entities in Scenario 5: Layperson’s justified inference. Table S12. Relationships among particulars in Scenario 5: Layperson’s justified inference. (DOCX 92 kb)
Additional file 1: Table S1. of LIN7A is a major determinant of cell-polarity defects in breast carcinomas
Creators: name: NadĂ¨Ge Gruel
name: Fuhrmann, Laetitia
name: Lodillinsky, Catalina
name: Benhamo, Vanessa
name: Mariani, Odette
name: AurĂŠlie CĂŠdenot
name: Arnould, Laurent
name: GaĂŤtan Macgrogan
name: Sastre-Garau, Xavier
name: Chavrier, Philippe
name: Delattre, Olivier
name: Vincent-Salomon, Anne
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Plant Biology

description: Characteristics of patients and tumors. (PDF 53 kb)
Additional file 3: of Heritable components of the human fecal microbiome are associated with visceral fat
Creators: name: Beaumont, Michelle
name: Goodrich, Julia
name: Jackson, Matthew
name: Idil Yet
name: Davenport, Emily
name: Vieira-Silva, Sara
name: Debelius, Justine
name: Pallister, Tess
name: Mangino, Massimo
name: Raes, Jeroen
name: Knight, Rob
name: Clark, Andrew
name: Ley, Ruth
name: Spector, Tim
name: Bell, Jordana
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Genus-level heritability estimates between the TUK discovery dataset and Goodrich. A) Scatterplot showing the genus-level heritability between TUK-D and Goodrich et al. [31] (r 2â  =â  0.67). B) Scatterplot showing the genus-level heritability between TUK-D and Goodrich et al. [33] (r 2â  =â  0.76). (PDF 43 kb)
Additional file 4: Figure S1. of LIN7A is a major determinant of cell-polarity defects in breast carcinomas
Creators: name: NadĂ¨Ge Gruel
name: Fuhrmann, Laetitia
name: Lodillinsky, Catalina
name: Benhamo, Vanessa
name: Mariani, Odette
name: AurĂŠlie CĂŠdenot
name: Arnould, Laurent
name: GaĂŤtan Macgrogan
name: Sastre-Garau, Xavier
name: Chavrier, Philippe
name: Delattre, Olivier
name: Vincent-Salomon, Anne
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Evaluation of specificity and sensitivity by receiver operating characteristic (ROC) curves. ROC plot for training (left panel) and validation (right panel) sets. The area under the curve (AUC) is indicated (bottom right) for each plot. (PDF 12 kb)
Hydroscapha rajani Ek & Šípková, 2009, sp. n.
Creators: name: Ek, Martin Fiká Č
name: Šípková, Hana
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Hydroscaphidae
Hydroscapha
Hydroscapha rajani

description: Hydroscapha rajani sp. n.
(Figs 17–24, 30–31)
Type material. HOLOTYPE: male (NMPC): “ INDIA, Meghalaya State (6) / E Khasi Hills, 11 km SW Cherra- / punjee, Laitkynsew, 21.–24.iv. / 2008, 25°12'N 91°40'E, 460m / Fikáček, Podskalská, Šípek lgt. // wet rock with algae/blue algae / and fallen leaves at side of / waterfall on small river surround. / by tropical forest, ca. 200m / upstream from living brigde”. PARATYPE: female (NMPC): same locality data as the holotype.
Description. Measurements: Total body length: not measured; length of fore body: 0.93 mm (holotype), 0.88 mm (paratype); elytral length: 0.57 mm (holotype), 0.53 mm (paratype); maximum width of elytra combined: 0.57 mm (holotype and paratype).
Colouration: Body uniformly dark brown.
Antenna: Antennomere II 1.85–1.90 times longer than wide; antennomere VIII strongly asymmetrical, 2.1–2.2 times longer than wide.
Male: Sternite V slightly sinuate on posterior margin, bare, with submedial tufts of setae at posterior margin; posterior margin not denticulate. Sternite VI with regularly arranged setae laterally in posterior 0.75, median portion bare; postero-laterally of the posterior emargination with tufts each consisting of large number of setae. Sternite VII with postero-median portion projecting into wide low obtuse lobe, posterior setae arranged into series along posterolateral margins. Aedeagus nearly straight in lateral view, indistinctly narrowing towards apical 12 hundredths of length, then strongly narrowing into obtuse apex.
Female: Sternite VI bilobate, with deep posteromedian emargination. Tergite VI slightly narrowing subapically, posterior portion simply rounded.
Differential diagnosis. Males of this species are unique among Asian Hydroscapha in having aedeagus wide even apically; otherwise they distinctively differ from the remaining species in the combination of characters on abdominal sternites. Females are unique in having abdominal sternite VI with a deep posteromedian emargination unknown in any other Asian Hydroscapha (other species have either trilobate or simply rounded posterior margin of female sternite VI).
Etymology. We dedicate the species to Dr. Priyadarshanan Dharma Rajan (Ashoka Trust for Research in Ecology and the Environment, Bangalore, India) to express our support for his contributions and discussions calling attention to the uninformed regulations of taxonomy-related activities in India introduced by current Indian law (see, e.g., Prathapan et al. 2008).
Distribution. The only two known specimens of this species were collected at locality #1 described above, at which they were mixed with specimens of H. khasiorum sp. n.
description: Published as part of Ek, Martin Fiká Č & Šípková, Hana, 2009, New Asian Hydroscapha, with comments on male-female association of co-occuring species (Coleoptera, Myxophaga, Hydroscaphidae), pp. 31-48 in Zootaxa 2286 on pages 40-43, DOI: 10.5281/zenodo.191255
Additional file 5: of Heritable components of the human fecal microbiome are associated with visceral fat
Creators: name: Beaumont, Michelle
name: Goodrich, Julia
name: Jackson, Matthew
name: Idil Yet
name: Davenport, Emily
name: Vieira-Silva, Sara
name: Debelius, Justine
name: Pallister, Tess
name: Mangino, Massimo
name: Raes, Jeroen
name: Knight, Rob
name: Clark, Andrew
name: Ley, Ruth
name: Spector, Tim
name: Bell, Jordana
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Concordance of OTU-BMI association results at the 97 OTUs between TwinsUK discovery sample and the three independent replication cohorts. Points marked in red show no consistent effect between the studies, while blue denotes consistent direction of association. Blue points that are empty circles are not significant, while blue filled circles indicate nominally significant results. A) Scatterplot between TwinsUK discovery sample (TUK-D) and American Gut (AG). B) Scatterplot between TUK-D and FGFP. C) Scatterplot between TUK-D and TwinsUK replication sample (TUK-R). (PDF 146 kb)
MOESM2 of Economic evaluations of interventions to reduce neonatal morbidity and mortality: a review of the evidence in LMICs and its implications for South Africa
Creators: name: Maredza, Mandy
name: Lumbwe Chola
name: Hofman, Karen
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Science Policy
subject: Computational Biology

description: Additional file 2: Table S1. Economic evaluation studies of interventions tox` reduce neonatal morbidity and mortality in LMICs (2000â  2013).
Additional file 2: of Self-reported practices among traditional birth attendants surveyed in western Kenya: a descriptive study
Creators: name: Bucher, Sherri
name: Konana, Olive
name: Liechty, Edward
name: Garces, Ana
name: Gisore, Peter
name: Marete, Irene
name: Tenge, Constance
name: Shipala, Evelyn
name: Wright, Linda
name: Esamai, Fabian
Publisher: name: Figshare
Year: 2016
Subjects: subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: Science Policy
subject: Computational Biology

description: Frequency tables for self-reported practices of TBAs in Western Kenya from which the results and findings for the descriptive study reported in this manuscript are derived. (PDF 40Â kb)
Additional file 2: Table S1. of The effects of long-term daily folic acid and vitamin B12 supplementation on genome-wide DNA methylation in elderly subjects
Creators: name: Kok, Dieuwertje
name: Dhonukshe-Rutten, Rosalie
name: Lute, Carolien
name: Heil, Sandra
name: AndrĂŠ Uitterlinden
name: Velde, Nathalie Van Der
name: Meurs, Joyce Van
name: Schoor, Natasja Van
name: Hooiveld, Guido
name: Groot, Lisette De
name: Kampman, Ellen
name: Steegenga, Wilma
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer

description: Top-100 positions that are differentially methylated after intervention with folic acid and vitamin B12. Overview of the top-100 positions that are differentially methylated (Benjamini-Hochberg adjusted p-value <0.05) after intervention with folic acid and vitamin B12 (FA/vB12). Changes for DNA methylation in the intervention group as well as the placebo group are presented as % beta-values and can range from 0-100 %.
Additional file 1: of Self-reported practices among traditional birth attendants surveyed in western Kenya: a descriptive study
Creators: name: Bucher, Sherri
name: Konana, Olive
name: Liechty, Edward
name: Garces, Ana
name: Gisore, Peter
name: Marete, Irene
name: Tenge, Constance
name: Shipala, Evelyn
name: Wright, Linda
name: Esamai, Fabian
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Computational Biology

description: The Global Network Community Birth Attendant Survey tool used during the current study (Kenya site specific questions, pp. 14â  15) and as reported in Garces et al. (2012) [20]. (DOC 392Â kb)
Additional file 12 of Predicting the three-dimensional folding of cis-regulatory regions in mammalian genomes using bioinformatic data and polymer models
Creators: name: Brackley, Chris
name: Brown, Jill
name: Waithe, Dominic
name: Babbs, Christian
name: Davies, James
name: Hughes, Jim
name: Buckle, Veronica
name: Marenduzzo, Davide
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Hematology

description: Figure S10. ChIP-seq and DNase-seq data from mES cells can also be used as input. (PDF 136 kb)
Cantharis paulonotata Pic. Moscardini 1903, stat. nov.
Creators: name: Fanti, Fabrizio
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lampyridae
Cantharis
Cantharis paulonotata

description: Cantharis paulonotata Pic, 1903 stat. nov.
Cantharis puncticollis Levr. var. paulonotata Pic, 1903: 146.
Loc. typ.: “ Kabylie: Jakouren (Pic)”
= Cantharis puncticollis Levr. v. notatipes Pic, 1903: 146 [syn. nov.]
= Cantharis puncticollis var. notaticeps Kazantsev, 2007: 50 [incorrect spelling]
= Cantharis puncticollis var. notaticeps Kazantsev & Brancucci, 2007: 245 [incorrect spelling]
= Cantharis (Telephorus) puncticollis Levrat variété nouvelle obscuripennis Pic, 1907: 113 [syn. nov.]
MOSCARDINI 1967 (as C. puncticollis): 29, 30 Fig. 1 – ef [aedeagus]; FANTI 2014: 69-70 (as C. puncticollis).
As highlighted above, the Algerian-Tunisian population known to date as Cantharis puncticollis is rather well separated at the aedeagic level (Moscardini, 1967) from the Sicilian populations and therefore must be called by the first specific name available in the literature. It should be known as C. paulonotata.
Note. This species is endemic to Algeria and Tunisia, rarely collected and relatively unknown. In fact, for example, the Wittmer’s collection probably has a different species from Algeria named C. puncticollis compared to the specimens in Pic’s collection with the same name C. puncticollis. Before a more in-depth study, we can take as an example of the species the aedeagus drawings (not the text) present in Moscardini, which refers to the var. obscuripennis, a specimen that had been determined by Pic himself (Moscardini 1967).
description: Published as part of Fanti, Fabrizio, 2020, Taxonomic notes on some Cantharidae of Sicily and North Africa, pp. 141-152 in Baltic Journal of Coleopterology 20 (2) on page 149, DOI: 10.5281/zenodo.10905414
title: Венгерский византинист Дюла Моравчик и его связи с российской наукой (по материалам Отдела рукописей и редких книг Библиотеки Венгерской академии наук)
Creators: name: Ковалев, М. В.
Publisher: name: Реноме
Year: 2023

description: В статье на основе материалов Отдела рукописей и редких книг Библиотеки Венгерской академии наук реконструируются личные и деловые контакты византиниста Дюлы Моравчика с его российскими и советскими коллегами на протяжении широкого временного промежутка: от начала 1920-х до ­начала 1970-х гг. Делается вывод о значении общих научных интересов для интеллектуального сближения, анализируются характер личной и деловой переписки, обсуждение в ней ключевых проблем развития византинистики, выявляется специфика интеллектуальных коммуникаций.
Additional file 1: of Integrating qualitative research methods into care improvement efforts within a learning health system: addressing antibiotic overuse
Creators: name: Munoz-Plaza, Corrine
name: Parry, Carla
name: Hahn, Erin
name: Tang, Tania
name: Nguyen, Huong
name: Gould, Michael
name: Kanter, Michael
name: Sharp, Adam
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Semi-structured interview guide. (DOC 32 kb)
Additional file 2: of Practice facilitation for improving cardiovascular care: secondary evaluation of a stepped wedge cluster randomized controlled trial using population-based administrative data
Creators: name: Armstrong, Catherine Deri
name: Taljaard, Monica
name: Hogg, William
name: Mark, Amy
name: Liddy, Clare
Publisher: name: Figshare
Year: 2016
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Additional documentation regarding Dataset construction. (PDF 313 kb)
Additional file 5 of Predicting the three-dimensional folding of cis-regulatory regions in mammalian genomes using bioinformatic data and polymer models
Creators: name: Brackley, Chris
name: Brown, Jill
name: Waithe, Dominic
name: Babbs, Christian
name: Davies, James
name: Hughes, Jim
name: Buckle, Veronica
name: Marenduzzo, Davide
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Hematology
subject: Plant Biology
subject: Computational Biology

description: Figure S3. Interactions between promoters and specific regulatory elements can be identified in each simulated conformation. (PDF 101 kb)
Additional file 2: of Species-level divergences in multiple functional traits between the two endemic subspecies of Blue Chaffinches Fringilla teydea in Canary Islands
Creators: name: Lifjeld, Jan
name: Anmarkrud, Jarl
name: Calabuig, Pascual
name: Cooper, Joseph
name: Johannessen, Lars
name: Johnsen, Arild
name: Kearns, Anna
name: Lachlan, Robert
name: Laskemoen, Terje
name: Marthinsen, Gunnhild
name: Stensrud, Even
name: Garcia-Del-Rey, Eduardo
Publisher: name: Figshare
Year: 2016
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: List of study skins used in the plumage colour spectrophotometry analyses and their voucher information in American Museum of Natural History, New York. (DOCX 15Â kb)
Additional file 1: of Neuregulin 1 confers neuroprotection in SOD1-linked amyotrophic lateral sclerosis mice via restoration of C-boutons of spinal motor neurons
Creators: name: Jurate Lasiene
name: Okiru Komine
name: Fujimori-Tonou, Noriko
name: Powers, Berit
name: Fumito Endo
name: Watanabe, Seiji
name: Shijie, Jin
name: Ravits, John
name: Horner, Philip
name: Misawa, Hidemi
name: Yamanaka, Koji
Publisher: name: Figshare
Year: 2016
Subjects: subject: Cell Biology
subject: Molecular Biology
subject: Neuroscience
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Supplementary figures (Figure S1, S2, S3, and S4). (PDF 2135 kb)
Additional file 2 of Predicting the three-dimensional folding of cis-regulatory regions in mammalian genomes using bioinformatic data and polymer models
Creators: name: Brackley, Chris
name: Brown, Jill
name: Waithe, Dominic
name: Babbs, Christian
name: Davies, James
name: Hughes, Jim
name: Buckle, Veronica
name: Marenduzzo, Davide
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics

description: Supplementary Methods. Further details of the simulation scheme; full details of the ChIP-seq, DNase-seq and Capture-C data analysis (which uses software and methods from Refs. [59â  63]); and full details of the clustering analysis (which uses software from [64]) and the Q $\mathcal {Q}$ score. (PDF 122 kb)
Additional file 1: of Practice facilitation for improving cardiovascular care: secondary evaluation of a stepped wedge cluster randomized controlled trial using population-based administrative data
Creators: name: Armstrong, Catherine Deri
name: Taljaard, Monica
name: Hogg, William
name: Mark, Amy
name: Liddy, Clare
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: CONSORT Extension for Cluster Trials Checklist. (PDF 341 kb)
Svistella Gorochov 1987
Creators: name: Li, Shi-Yu
name: Peng, Hui-Ling
name: He, Zhu-Qing
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Orthoptera
Haglotettigoniidae
Svistella

description: genus Svistella Gorochov, 1987
Type species: Svistella bifasciata =(Paratrigonidium bifasciatum Shiraki, 1911)
Key to species
(Fig. 1, 3)
1 Forewing more or less having black color.................................................................. 2
- Forewing yellow...................................................................................... 5
2 Apical field of forewing black.............................................................. S. fuscoterminata
- Apical field of forewing not black........................................................................ 3
3 Mirror black................................................................................. S. chekjawa
- Mirror yellow........................................................................................ 4
4 With white spots on forewing.................................................................. S. argentata
- Without white spot on forewing................................................................ S. bifasciata
5 With black spots on hind femur near apical part............................................................. 6
- Without black spots on hind femur (except ventral side)....................................................... 7
6 With two black spots on side................................................................... S. anhuiensis
- With one spot on dorsal side and one on ventral side........................................... S. wuyong sp. nov.
7 Pronotum concolorous............................................................................ S. dubia
- With red or brown bands on pronotum.................................................................... 8
8 With black stripe on genicular lobe of hind femur.................................................. S. rufonotata
- Without black stripe on genicular lobe of hind femur......................................................... 9
9 Abdomen black, frons brown............................................................... S. malu sp. nov.
- Abdomen and frons yellow........................................................................ S. fallax
description: Published as part of Li, Shi-Yu, Peng, Hui-Ling & He, Zhu-Qing, 2021, Two new species of genus Svistella Gorochov, 1987 from China (Orthoptera Trigonidiidae: Trigonidiinae), pp. 173-183 in Zootaxa 4949 (1) on page 177, DOI: 10.11646/zootaxa.4949.1.10, http://zenodo.org/record/4635669
Svistella wuyong Li & Peng & He 2021, sp. nov.
Creators: name: Li, Shi-Yu
name: Peng, Hui-Ling
name: He, Zhu-Qing
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Orthoptera
Haglotettigoniidae
Svistella
Svistella wuyong

description: Svistella wuyong He sp. nov.
Figs. 1C, 3E&F, 4
Holotype: male, CHINA, Yunnan Prov., Yingjiang, Nabang, E 97.57, N 24.75, 23-viii-2019, coll. He Zhu-Qing. (depository: East China Normal University, China)
Paratype: 2 males, same data as holotype.
Male: Body large for this genus (Fig 3E). Head: head little wider than anterior margin of pronotum (Fig. 1C, 3E, 4B), vertex not flattened, frontal rostrum as wide as 1st antennal joint (Fig. 4A), 3rd–4th segments of maxillary palpi elongated, 5th segment triangular. Pronotum: pronotum pubescent and posteriorly widened (Fig. 4B), no lateral carina, anterior and posterior margin straight, fore tibia with oval tympanum on outer side (Fig. 4C), but a slit on inner side (Fig. 4D), hind tibia with three pairs of dorsal spurs and five apical spurs, tegmen long and narrow, almost extending to apex of abdomen, mirror large and oval. Genitalia: Epiphallic lateral lobe long with three minute teeth on the apex of each lateral lobe (Fig. 4E&F).
Female: unknown.
Coloration: Overall color yellow. Frons reddish brown with two red longitudinal bands from head to posterior margin of pronotum; lateral lobes of pronotum red. Two black stripes on the outer pagina of hind femur, and one on the inner side, a black spot on the dorsal and lateral side near hind femur near apical portion, a small black spot on the opposite side of above spot, in the ventral side of hind femur near apical portion.
Comparison: This species can be easily distinguished from other species by the combination of red bands on pronotum and black stripes on the hind femur (Fig. 1C).
Measurements (in mm): Male: SZ 7.6–7.7, PR 1.2–1.3, FW 5.5–5.6, HF 5.8–5.9.
Distribution: China (Yunnan).
Etymology: The specific epithet wuyong is for the Chinese phonetic alphabet. It means “improperly use”. Because this new species was misidentified as S. rufonotata for many years. See details in discussion.
Song: The song was stereotyped with 78 chirps /minute. Each chirp contained 16.4±0.55 pulses, and continued 0.439±0.015 s (Fig. 6).
description: Published as part of Li, Shi-Yu, Peng, Hui-Ling & He, Zhu-Qing, 2021, Two new species of genus Svistella Gorochov, 1987 from China (Orthoptera Trigonidiidae: Trigonidiinae), pp. 173-183 in Zootaxa 4949 (1) on pages 177-179, DOI: 10.11646/zootaxa.4949.1.10, http://zenodo.org/record/4635669
Open science and research assessment: which agenda should the informatics community push?
Creators: name: Romary, Laurent
Publisher: name: Zenodo
Year: 2024

description: Topic of Discussion 

The informatics community is characterized by its distinct publication profile (e.g. journals and conferences) together with a longstanding commitment to open science, and active involvement in the creation of various infrastructures dedicated to the dissemination of publications (e.g. CiteSeerX and DBLP) or software code (via Software Heritage). We will focus on the specific issue of research software and its identification in scholarly publication to improve the visibility of such assets in a researcher's profile. During this second edition of the GraspOS Community of Practice, we will hear from Laurent Romary, who is Director for Scientific Information and Culture at Inria, the French national research organisation for Computer Science.

Contents 

Slides from the Presentation that was given by Laurent Romary on the day of the event

The collaborative notes that were taken on the day by the participants

Should you wish to have a look at the material, please use the collaborative notes as supplement to the slides. The collaborative notes is the record of the discussion we had on the day based on the topics that were raised in the presentation.
Standardizing nursing documentation of specialty interventions in behavioral healthcare
Creators: name: Meriscar, Christian
Publisher: name: No Publisher Supplied
Year: 2024

description: Abstract: There are reporting criteria to meet documentation standards for nurses utilizing specialty interventions (restraints, physical hold techniques, seclusions, and involuntary medications) in the Behavioral Health setting. Wide practice gaps exist across clinical settings despite national guidelines that provide a rationale for standardizing the reporting of these applications. Paper materials remain for reporting specialty interventions, while all other health records are communicated electronically- a more streamlined and organized data collection system. The project focused on standardizing behavioral health nursing flowsheets using evidence-based improvement tools. Methodology: Implementation surveys measured the behavioral health nurses ’comfort level using the flowsheets based on usability, productivity, acceptability, and sustainability. A comparison of forty (40) specialty intervention health records highlighted the value of an evidence-based flowsheet within a two-month project timeframe. The primary outcome measure focused on meeting recommended documentation criteria and streamlining reporting. Results: There was a statistically significant improvement in documentation results post-project implementation of standardized flowsheets with p = <0.001, t(9.5570, and df(38). The satisfaction surveys demonstrate that the nurses (n = 12) noted an increase in comfortability post- implementation and would recommend its continued use (pre-group level n = 1, 8% and post- group level n = 9, 75%). Implications for practice: The evidence-based flowsheets demonstrated effectiveness in meeting documentation standards and favorable results from standardizing nursing care practices. Keywords: behavioral health, documentation, evidence-based, nursing, flowsheets
Svistella malu Li & Peng & He 2021, sp. nov.
Creators: name: Li, Shi-Yu
name: Peng, Hui-Ling
name: He, Zhu-Qing
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Orthoptera
Haglotettigoniidae
Svistella
Svistella malu

description: Svistella malu He sp. nov.
Figs. 1D, 3G&H, 5
Holotype: male, CHINA, Yunnan Prov., Kunming, E 102.84, N 24.90, altitude 2000 m, 18-viii-2019, coll. He Zhu-Qing. (depository: East China Normal University, China)
Paratype: 1 male, same data as holotype; 1 male, 22-ix-2016, other data same as holotype; 2 males & 2 females CHINA, Yunnan Prov., Tengchong, Houqiao, E 98.28, N 25.33, altitude 2000 m, 5-ix-2018, coll. Bi Wen-Xuan.
Male: Body medium-sized for this genus (Fig. 3G). Head: head little wider than anterior margin of pronotum (Fig. 1D, 3G, 5B), vertex not flattened, frontal rostrum as wide as 1st antennal joint (Fig. 5A), 3rd–4th segments of maxillary palpi elongated, 5th segment triangular. Pronotum: pronotum pubescent and posteriorly widened (Fig. 5B), no lateral carina, anterior and posterior margin straight, fore tibia with oval tympanum on outer side (Fig. 5C), but concave on inner side (Fig. 5D), hind tibia with three pairs of dorsal spurs and five apical spurs, tegmen elongate and narrow, almost extending to apex of abdomen, mirror large and oval. Genitalia: Epiphallic lateral lobe long with one reverse tooth on outer side, and two minute teeth on the apex of each lateral lobe (Fig. 5E&F).
Female: Similar to male, ovipositor straight and little curved.
Coloration: Overall color yellow. Frons brown with two red longitudinal bands from head to posterior margin of pronotum, one short red stripe behind each eye; lateral lobes of pronotum red. No mark on hind femur, but a small black spot on the ventral side of hind femur near apex.
Variation: Individuals from Kunming is larger than those from Tengchong. Two females were only collected from Tengchong, and they were all long wing type (2.5 times as long as forewing).
Comparison: This species can be distinguished from other species by the combination of the lack of black stripes on the hind femur, red bands on the lateral lobes of pronotum, and a small black spot on the ventral side of hind femur near apical part.
Measurements (in mm): Male: SZ 7.0–7.3, PR 1.1–1.2, FW 4.5–5.6, HF 4.4–4.9; female: SZ 5.9–6.0, PR 1.0–1.1, FW 5.4–5.5, HF 4.3–4.6, OV 2.0–2.1.
Distribution: China (Yunnan).
Etymology: The specific epithet malu is for the Chinese phonetic alphabet, which is the abbreviation of. It means “deliberately confuse”. The new species was misidentified as S. dubia previously by He Zhu-Qing.
Song: The song was stereotyped with 80 chirps/minute. Each chirp contained 17.4±0.55 pulses, and continued 0.45±0.015 s (Fig. 6).
description: Published as part of Li, Shi-Yu, Peng, Hui-Ling & He, Zhu-Qing, 2021, Two new species of genus Svistella Gorochov, 1987 from China (Orthoptera Trigonidiidae: Trigonidiinae), pp. 173-183 in Zootaxa 4949 (1) on pages 179-181, DOI: 10.11646/zootaxa.4949.1.10, http://zenodo.org/record/4635669
Additional file 6 of Predicting the three-dimensional folding of cis-regulatory regions in mammalian genomes using bioinformatic data and polymer models
Creators: name: Brackley, Chris
name: Brown, Jill
name: Waithe, Dominic
name: Babbs, Christian
name: Davies, James
name: Hughes, Jim
name: Buckle, Veronica
name: Marenduzzo, Davide
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Figure S4. Capture-C data confirms many of the long range chromatin interactions within the Îą globin locus that are predicted by simulations. (PDF 144 kb)