cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 3 of Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice
Creators: name: Choi, Jae
name: Lye, Zoe
name: Groen, Simon
name: Xiaoguang Dai
name: Priyesh Rughani
name: Zaaijer, Sophie
name: Harrington, Eoghan
name: Juul, Sissel
name: Purugganan, Michael
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 3. Review history.
Additional file 1 of Different dietary carbohydrate component intakes and long-term outcomes in patients with NAFLD: results of longitudinal analysis from the UK Biobank
Creators: name: Liu, Zhening
name: Huang, Hangkai
name: Xie, Jiarong
name: Hou, Linxiao
name: Xu, Chengfu
Publisher: name: figshare
Year: 2023
Subjects: Biotechnology
Chemical Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Science Policy

description: Additional file 1: Supplementary Table S1. Description of types of dietary carbohydrates. Supplementary Table S2. Criteria for the end stage liver disease. Supplementary Table S3. Assessment of socioeconomic covariates. Supplementary Table S4. Spearman correlations between total carbohydrate and individual components. Supplementary Table S5. Characteristics of participants with NAFLD included in or excluded from the current study. Supplementary Table S6. Multivariable-adjusted HRs (95% CIs) of incident ESLD with non-free sugar from subgroup analyses. Supplementary Table S7. Multivariable-adjusted HRs (95% CIs) of incident ESLD with free sugar from subgroup analyses. Supplementary Table S8. Multivariable-adjusted HRs (95% CIs) of incident ESLD with dietary fiber from subgroup analyses. Supplementary Table S9. Multivariable-adjusted HRs (95% CIs) of all-cause mortality with non-free sugar from subgroup analyses. Supplementary Table S10. Multivariable-adjusted HRs (95% CIs) of all-cause mortality with free sugar from subgroup analyses. Supplementary Table S11. Multivariable-adjusted HRs (95% CIs) of all-cause mortality with dietary fiber from subgroup analyses. Supplementary Table S12. Sensitivity analyses of the HRs for the associations of different components of carbohydrate consumption with ESLD. Supplementary Table S13. Sensitivity analyses of the HRs for the associations of different components of carbohydrate consumption with all-cause mortality.
Additional file 1 of Defining sustainability in practice: views from implementing real-world innovations in health care
Creators: name: Urquhart, Robin
name: Kendell, Cynthia
name: Cornelissen, Evelyn
name: Madden, Laura
name: Powell, Byron
name: Kissmann, Glenn
name: Richmond, Sarah
name: Willis, Cameron
name: Bender, Jackie
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Computational Biology

description: Additional file 1. Draft interview guide for semi-structured interviews.
MHD simulations of small and large scale dynamos
Creators: name: Brandenburg, A.
name: Haugen, N. E. L.
name: Dobler, W.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Isotropic homogeneous hydromagnetic turbulence is studied using numerical simulations at resolutions of up to 1024^3 meshpoints. It is argued that, in contrast to the kinematic regime, the nonlinear regime is characterized by a spectral magnetic power that is decreasing with increasing wavenumber, regardless of whether or not the turbulence has helicity. This means that the root-mean-square field strength converges to a limiting value at large magnetic Reynolds numbers. The total (magnetic and kinetic) energy spectrum tends to be somewhat shallower than k^{-5/3}, in agreement with the findings of other groups. In the presence of helicity, an inverse cascade develops, provided the scale separation between the size of the computational box and the scale of the energy carrying eddies exceeds a ratio of at least two. Finally, the constraints imposed by magnetic helicity conservation on mean-field theory are reviewed and new results of simulations are presented.
description: 22 pages, 10 figures, to appear in "Waves, and Instabilities in the Solar Plasma", ed. R. von Fay-Siebenb\"urgen et al., Kluwer
Quantum oscillations and electronic structures in large Chern number semimetal RhSn
Creators: name: Xu, Sheng
name: Zhou, Liqin
name: Wang, Huan
name: Wang, Xiao-Yan
name: Su, Yuan
name: Cheng, Peng
name: Weng, Hongming
name: Xia, Tian-Long
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We report the magnetoresistance, Hall effect, de Haas-van Alphen (dHvA) oscillations and the electronic structures of single crystal RhSn, which is a typical material of CoSi family holding a large Chern number. The large unsaturated magnetoresistance is observed with B//[001]. The Hall resistivity curve indicates that RhSn is a multi-band system with high mobility. Evident quantum oscillations have been observed, from which the light effective masses are extracted. Ten fundamental frequencies are extracted after the fast Fourier transform analysis of the dHvA oscillations with B//[001] configuration. The two low frequencies F$_1$ and F$_2$ do not change obviously and the two high frequencies F$_9$ and F$_{10}$ evolve into four when B rotates from B//[001] to B//[110], which is consistent with the band structure in the first-principles calculations with spin-orbit coupling (SOC). The extracted Berry phases of the relative pockets show a good agreement with the Chern number $\pm4$ (with SOC) in the first-principles calculations. Above all, our studies indicate that RhSn is an ideal platform to study the unconventional chiral fermions and the surface states.
description: 6 pages, 7 figures, accepted by Physical Review B
Additional file 4 of Rugby Fans in Training New Zealand (RUFIT-NZ): protocol for a randomized controlled trial to assess the effectiveness and cost-effectiveness of a healthy lifestyle program for overweight men delivered through professional rugby clubs in New Zealand
Creators: name: Maddison, Ralph
name: Hargreaves, Elaine
name: Yannan Jiang
name: Calder, Amanda
name: Wyke, Sally
name: Gray, Cindy
name: Hunt, Kate
name: Lubans, David
name: Eyles, Helen
name: Draper, Nick
name: Ihirangi Heke
name: Kara, Stephen
name: Sundborn, Gerhard
name: Arandjus, Claire
name: Jenkins, Matthew
name: Marsh, Samantha
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 4. Participant Information Sheet and Consent Form.
The Growth of HII Regions During Reionization
Creators: name: Furlanetto, Steven
name: Zaldarriaga, Matias
name: Hernquist, Lars
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Recently, there has been a great deal of interest in understanding the reionization of hydrogen in the intergalactic medium (IGM). One of the major outstanding questions is how this event proceeds on large scales. Motivated by numerical simulations, we develop a model for the growth of HII regions during the reionization era. We associate ionized regions with large-scale density fluctuations and use the excursion set formalism to model the resulting size distribution. We then consider ways in which to characterize the morphology of ionized regions. We show how to construct the power spectrum of fluctuations in the neutral hydrogen field. The power spectrum contains definite features from the HII regions that should be observable with the next generation of low-frequency radio telescopes through surveys of redshifted 21 cm emission from the reionization era. Finally, we also consider statistical descriptions beyond the power spectrum and show that our model of reionization qualitatively changes the distribution of neutral gas in the IGM.
description: 14 pages, 13 figures, submitted to ApJ
Linckia guildingi Gray 1840
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Valvatida
Ophidiasteridae
Linckia
Linckia guildingi

description: * irregularis, Perrier, 1869, Ophidiaster
Ophidiaster irregularis Perrier, 1869: 61.
Linckia guildingi ‒ Clark 1993: 348.
CURRENT STATUS. — Linckia guildingi Gray, 1840.
REMARKS
Perrier does not refer to the species in his 1875 revision. Perrier’s single specimen originated from Mayotte.
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on page 292, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
Ownership preserving AI Market Places using Blockchain
Creators: name: Somy, Nishant Baranwal
name: Kannan, Kalapriya
name: Arya, Vijay
name: Hans, Sandeep
name: Singh, Abhishek
name: Lohia, Pranay
name: Mehta, Sameep
Publisher: name: arXiv
Year: 2020
Subjects: subject: Distributed, Parallel, and Cluster Computing (cs.DC)
subject: Cryptography and Security (cs.CR)
subject: FOS: Computer and information sciences

description: We present a blockchain based system that allows data owners, cloud vendors, and AI developers to collaboratively train machine learning models in a trustless AI marketplace. Data is a highly valued digital asset and central to deriving business insights. Our system enables data owners to retain ownership and privacy of their data, while still allowing AI developers to leverage the data for training. Similarly, AI developers can utilize compute resources from cloud vendors without loosing ownership or privacy of their trained models. Our system protocols are set up to incentivize all three entities - data owners, cloud vendors, and AI developers to truthfully record their actions on the distributed ledger, so that the blockchain system provides verifiable evidence of wrongdoing and dispute resolution. Our system is implemented on the Hyperledger Fabric and can provide a viable alternative to centralized AI systems that do not guarantee data or model privacy. We present experimental performance results that demonstrate the latency and throughput of its transactions under different network configurations where peers on the blockchain may be spread across different datacenters and geographies. Our results indicate that the proposed solution scales well to large number of data and model owners and can train up to 70 models per second on a 12-peer non optimized blockchain network and roughly 30 models per second in a 24 peer network.
Cultivating curiosity : optimizing the benefits of museum visits for children under five
Creators: name: Baš, Mojca D’Arcy Ann
Publisher: name: The University of British Columbia
Year: 2025

description: This conceptual paper investigates the intersection of early childhood development and museum education, focusing specifically on the experiences and needs of children under five. From birth to age five, the early years represent a critical window for holistic development, laying the foundation for lifelong learning, behavior, and well-being. Young children greatly benefit from diverse experiences that nurture curiosity, creativity, and problem-solving during this crucial period. With their educational, cultural, and historical missions, museums are well positioned to make meaningful contributions to this developmental stage. However, museum programming often centers on school-aged children, with limited resources specifically designed for children under five and the early childhood educators (ECES) who support them. Much existing research also emphasizes family-based museum learning, highlighting a notable gap in understanding the educator-child dynamic within these spaces. To address this gap, the paper explores how museums can more effectively engage young children through developmentally appropriate programming and educator support. First, it synthesizes existing literature to identify the best practices and essential elements for early childhood engagement in museums. Second, it analyzes publicly available information from museum websites in Newfoundland and Labrador to assess how current programming accommodates children under five, particularly regarding accessibility, developmental alignment, and educator resources. Third, the paper proposes a practical, research-informed toolkit to equip ECES and museum professionals with strategies for creating inclusive, meaningful museum experiences for young learners. This paper contributes to the growing discourse on cultural institutions as partners in early learning by bridging the divide between research and practice. The proposed toolkit offers a concrete, evidence-based resource to empower educators and museums alike in fostering developmentally appropriate and engaging environments for children under five.
Additional file 2: of BERMUDA: a novel deep transfer learning method for single-cell RNA sequencing batch correction reveals hidden high-resolution cellular subtypes
Creators: name: Wang, Tongxin
name: Johnson, Travis
name: Shao, Wei
name: Lu, Zixiao
name: Helm, Bryan
name: Zhang, Jie
name: Huang, Kun
Publisher: name: figshare
Year: 2019
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Information Systems not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Review history (DOCX 44 kb)
Modeling Nonstationary and Asymmetric Multivariate Spatial Covariances via Deformations
Creators: name: Vu, Quan
name: Zammit-Mangion, Andrew
name: Cressie, Noel
Publisher: name: arXiv
Year: 2020
Subjects: subject: Methodology (stat.ME)
subject: FOS: Computer and information sciences

description: Multivariate spatial-statistical models are often used when modeling environmental and socio-demographic processes. The most commonly used models for multivariate spatial covariances assume both stationarity and symmetry for the cross-covariances, but these assumptions are rarely tenable in practice. In this article we introduce a new and highly flexible class of nonstationary and asymmetric multivariate spatial covariance models that are constructed by modeling the simpler and more familiar stationary and symmetric multivariate covariances on a warped domain. Inspired by recent developments in the univariate case, we propose modeling the warping function as a composition of a number of simple injective warping functions in a deep-learning framework. Importantly, covariance-model validity is guaranteed by construction. We establish the types of warpings that allow for cross-covariance symmetry and asymmetry, and we use likelihood-based methods for inference that are computationally efficient. The utility of this new class of models is shown through two data illustrations: a simulation study on nonstationary data and an application on ocean temperatures at two different depths.
Competition and adaptation in an Internet evolution model
Creators: name: Serrano, M. Angeles
name: Boguna, Marian
name: Diaz-Guilera, Albert
Publisher: name: arXiv
Year: 2004
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Networking and Internet Architecture (cs.NI)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: We model the evolution of the Internet at the Autonomous System level as a process of competition for users and adaptation of bandwidth capability. We find the exponent of the degree distribution as a simple function of the growth rates of the number of autonomous systems and the total number of connections in the Internet, both empirically measurable quantities. This fact place our model apart from others in which this exponent depends on parameters that need to be adjusted in a model dependent way. Our approach also accounts for a high level of clustering as well as degree-degree correlations, both with the same hierarchical structure present in the real Internet. Further, it also highlights the interplay between bandwidth, connectivity and traffic of the network.
description: Minor content changes and inset of fig.2
Dual Scattering Channel Schemes Extending the Johns Algorithm
Creators: name: Hein, Steffen
Publisher: name: arXiv
Year: 2003
Subjects: subject: Numerical Analysis (math.NA)
subject: FOS: Mathematics
subject: 65M12

description: Dual scattering channel schemes extend the transmission line matrix numerical method (JOHNS' TLM algorithm) in two directions. For one point, transmission line links are replaced by abstract scattering channels in terms of paired distributions (characteristic impedances are thus neither needed, nor in general defined, e.g.). In the second place, non-trivial cell interface scattering is admitted during the connection cycle. Both extensions open a wide field of application beyond the range of classical time domain schemes, such as YEE's FDTD method and TLM. A DSC heat propagation [diffusion] scheme in non-orthogonal mesh, wherein heat sources are coupled to a lossy Maxwell field, illustrates the approach.
description: 22 pages, 4 figures, some misprints have been corrected
Reply to ``Comment on `Properties of the massive Thirring model from the XYZ spin chain' "
Creators: name: Kolanovic, M.
name: Pallua, S.
name: Prester, P.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We elaborate in more details why lattice calculation in [Kolanovic et al, Phys. Rev. D 62, 025021 (2000)] was done correctly and argue that incresing the number of sites is not expected to change our conclusions on the mass spectrum.
description: 2 pages, revtex 4, to be published in Phys. Rev. D
Probing the dynamical phase transition with a superconducting quantum simulator
Creators: name: Xu, Kai
name: Sun, Zheng-Hang
name: Liu, Wuxin
name: Zhang, Yu-Ran
name: Li, Hekang
name: Dong, Hang
name: Ren, Wenhui
name: Zhang, Pengfei
name: Nori, Franco
name: Zheng, Dongning
name: Fan, Heng
name: Wang, H.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Non-equilibrium quantum many-body systems, which are difficult to study via classical computation, have attracted wide interest. Quantum simulation can provide insights into these problems. Here, using a programmable quantum simulator with 16 all-to-all connected superconducting qubits, we investigate the dynamical phase transition in the Lipkin-Meshkov-Glick model with a quenched transverse field. Clear signatures of the dynamical phase transition, merging different concepts of dynamical criticality, are observed by measuring the non-equilibrium order parameter, nonlocal correlations, and the Loschmidt echo. Moreover, near the dynamical critical point, we obtain the optimal spin squeezing of $-7.0\pm 0.8$ decibels, showing multipartite entanglement useful for measurements with precision five-fold beyond the standard quantum limit. Based on the capability of entangling qubits simultaneously and the accurate single-shot readout of multi-qubit states, this superconducting quantum simulator can be used to study other problems in non-equilibrium quantum many-body systems.
description: 13 pages, 13 figures
“Everybody Likes Chicken” - A Focus Group Study on Consumers in Ghana
Creators: name: Asante-Addo, Collins
name: Weible, Daniela
name: Asante-Addo, Collins
name: Weible, Daniela
Publisher: name: Unknown
Year: 2019
Subjects: subject: Agricultural and Food Policy
subject: Consumer/Household Economics
subject: Food Consumption/Nutrition/Food Safety
subject: chicken meat
subject: imported vs. domestic
subject: Ghana
subject: perceptions and attitudes
subject: focus groups

description: In sub-Saharan Africa, chicken meat is one of the important sources of protein and has great potential to enhance food security. The poultry sector, however, is challenged by rising imports, changing consumers’ preferences, and increasing costs of production. Preference for domestic chicken will depend largely on product characteristics and purchase motives, but also on how consumers’ perceive and judge domestic chicken in comparison to imported chicken. This study provides insight into how consumers in Ghana perceive chicken meat and whether these perceptions differ between domestic and imported chicken as well as the drivers of purchase. We conducted seven focus group discussions involving a total of 44 participants. Among the purchasing criteria, price is the most important factor in consumers’ decision-making process. Other factors include health/safety, convenience, taste, and freshness. Generally, consumers have strong beliefs toward domestic chicken as they perceive it to be fresher, tastier, healthier, and thus, better quality than imported chicken meat. Concerns about the use of growth hormones and antibiotics resulted in the low-quality perceptions of imported chicken meat. Nonetheless, imported chicken is seen as cheaper, convenient, and readily available. The results suggest that the higher price and inconvenience associated with domestic chicken may limit its future growth. Therefore, domestic producers must tailor their products to the characteristics that are important to consumers and build a marketing strategy that stresses more on good taste, freshness, and quality. Additionally, any policy aimed at the poultry industry should consider consumer concerns toward the safety, quality, and convenience of chicken.
Is nonhelical hydromagnetic turbulence peaked at small scales?
Creators: name: Haugen, Nils Erland L.
name: Brandenburg, Axel
name: Dobler, Wolfgang
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Nonhelical hydromagnetic turbulence without an imposed magnetic field is considered in the case where the magnetic Prandtl number is unity. The magnetic field is entirely due to dynamo action. The magnetic energy spectrum peaks at a wavenumber of about 5 times the minimum wavenumber in the domain, and not at the resistive scale, as has previously been argued. Throughout the inertial range the spectral magnetic energy exceeds the kinetic energy by a factor of about 2.5, and both spectra are approximately parallel. At first glance, the total energy spectrum seems to be close to k^{-3/2}, but there is a strong bottleneck effect and it is suggested that the asymptotic spectrum is k^{-5/3}. This is supported by the value of the second order structure function exponent that is found to be ζ_2=0.70, suggesting a k^{-1.70} spectrum.
description: 6 pages, 6 figures
Torenia
Creators: name: Fischer, Eberhard
name: Lachenaud, Olivier
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Lamiales
Linderniaceae
Torenia

description: Key to the African and Madagascan species of Torenia
 1. Anthers with distinct spur-like projections of the connective up 0.25 mm long. Endemic of Madagascar................................................................................................................................................................................... T. stolonifera
- Anthers without spur-like projections........................................................................................................................... 2
2. Corolla small, tube <7.5 mm long; calyx ridged to narrowly winged (wings <0.5 mm broad); widespread species of usually open habitats (swamps, ruderal vegetation, secondary forests, sometimes on rocks)...................................... 3
- Corolla larger, tube 8–15 mm long; calyx narrowly to broadly winged; uncommon species of forest habitats......... 4
 3. Leaves ovate to lanceolate; appendages of abaxial stamens short and indistinct, only a small knee-like bulge present, sparsely covered with glandular hairs; usually in open and secondary vegetation.................................... T. thouarsii
 - Leaves orbicular; appendages of abaxial stamens distinct and spur-like, densely covered with glandular hairs and papillae; secondary forests and on rocks..................................................................................................... T. dinklagei
 4. Calyx lobes obtuse; corolla white with greenish-white to pink lower lip; abaxial stamens with geniculate filaments forming the letter Z..................................................................................................................................... T. silvicola
- Calyx lobes acute; corolla pink or mauve with white markings; abaxial stamens with curved filaments bearing clavate appendages at base............................................................................................................................................ 5
 5. Leaves much longer than broad, 30–45 x 14–25 mm (length:width ratio 2.1:1 – 1.8:1); calyx narrowly winged (wings <0.7 mm broad); corolla tube 11–15 mm long.................................................................................. T. mannii
 5* Leaves not or hardly longer than broad, 20–28 × 20–25 mm (length:width ratio 1:1 – 1.12:1); calyx broadly winged (wings 1.5–2.5 mm broad); corolla tube 8–9 mm long................................................................................... T. daubyi
description: Published as part of Fischer, Eberhard & Lachenaud, Olivier, 2013, A new species of Torenia (Linderniaceae) from Gabon, remarks on Torenia mannii Skan, and a key to the African and Madagascan Torenia species, pp. 40-46 in Phytotaxa 125 (1) on page 41, DOI: 10.11646/phytotaxa.125.1.6, http://zenodo.org/record/5085181
Distillation of local purity from quantum states
Creators: name: Devetak, I.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Recently Horodecki et al. [Phys. Rev. Lett. 90, 100402 (2003)] introduced an important quantum information processing paradigm, in which two parties sharing many copies of the same bipartite quantum state distill local pure states, by means of local unitary operations assisted by a one-way (two-way) completely dephasing channel. Local pure states are a valuable resource from a thermodynamical point of view, since they allow thermal energy to be converted into work by local quantum heat engines. We give a simple information-theoretical characterization of the one-way distillable local purity, which turns out to be closely related to a previously known operational measure of classical correlations, the one-way distillable common randomness.
description: 8 pages
Observation of Topological Band Gap Solitons
Creators: name: Mukherjee, Sebabrata
name: Rechtsman, Mikael C.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Optics (physics.optics)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Quantum Gases (cond-mat.quant-gas)
subject: Pattern Formation and Solitons (nlin.PS)
subject: FOS: Physical sciences

description: Topological materials exhibit properties dictated by quantised invariants that make them robust against perturbations. This topological protection is a universal wave phenomenon that applies not only in the context of electrons in solid-state materials but also to photonic systems, ultracold atoms, mechanical systems, circuits, exciton-polaritons and beyond. However, the vast majority of research in these systems has focused on the linear domain, i.e., where inter-particle interactions do not play a role. Here, we experimentally observe solitons -- waves that propagate without changing shape as a result of nonlinearity -- in the bulk of a photonic Floquet topological insulator. These solitons exhibit fundamentally different behaviour than solitons in ordinary band gaps in that they execute cyclotron-like orbits that are associated with the topology of the lattice. Specifically, we employ a laser-written waveguide array with periodic variations along the waveguide axis that give rise to non-zero Floquet winding number, where the nonlinearity arises from the optical Kerr effect of the ambient glass. The effect described here is applicable to a range of bosonic systems due to its description by the focusing nonlinear Schrödinger equation, i.e., the Gross-Pitaevskii equation with attractive interactions.
description: 5 pages, 3 figures, and Supplementary Information
Nymphaster arenatus
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Valvatida
Goniasteridae
Nymphaster
Nymphaster arenatus

description: jacqueti Perrier, 1882, Dorigona
Dorigona jacqueti Perrier in Milne-Edwards, 1882: 47. — Perrier 1894: 383, pl. 21, fig. 4, pl. 22, fig. 5.
Nymphaster arenatus ‒ Clark & Downey 1992: 254.
CURRENT STATUS. — Nymphaster arenatus (Perrier, 1881).
TYPE MATERIAL. — Atlantic Ocean • 1 syntype; station 39; Travailleur expedition (1881); 44°05’N, 09°32’W; depth 1037 m; MNHN-IE-2014-415.
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on page 293, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
FDR, lend-lease and China : a case study of presidential and bureaucratic statecraft in World War II
Creators: name: Burt, Sally
Publisher: name: The Australian National University
Year: 2011
Subjects: subject: E183.8.C6 B87 2011
subject: Roosevelt, Franklin D. 1882-1945 (Franklin Delano),
subject: World War, 1939-1945 Diplomatic history
subject: United States Foreign relations China
subject: China Foreign relations United States

description: This thesis examines Franklin D. Roosevelt's conduct of foreign relations with China during World War II. It explores FDR's leadership style, specifically his preference for centralising power into his hands, his sensitivity to public opinion and his desire to avoid confrontations with other leaders. These leadership traits can be seen clearly in wartime Sino-US relations. By analysing FDR's policies, his use of personal representatives, his summit diplomacy, and the interactions between foreign policymaking institutions, the impact of these traits on his dealings with China becomes much clearer. Similarities between aspects of Franco-US relations and Sino-US relations also shed light on the role these traits played in Roosevelt's wartime diplomacy with China. This thesis argues that Roosevelt's leadership style and his methods of conducting foreign relations caused confusion for those at the sub-cabinet level charged with implementing US China policy. The diplomats and military staff in China lacked clearly articulated objectives so their success or failure is difficult to assess. What is clear is that the outcomes of wartime Sino-US relations did not serve US interests and FDR's role in that should be acknowledged. The US faced many more problems in the post-war world, particularly in Sino-US relations, than it needed to because of FDR's methods of conducting diplomacy.
Additional file 1 of Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice
Creators: name: Choi, Jae
name: Lye, Zoe
name: Groen, Simon
name: Xiaoguang Dai
name: Priyesh Rughani
name: Zaaijer, Sophie
name: Harrington, Eoghan
name: Juul, Sissel
name: Purugganan, Michael
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 1: Figure S1. Dot plot comparing chromosome 6 of japonica variety Nipponbare to circum-aus variety N22 and indica variety R498. Figure S2. Distribution of the proportion of missing nucleotides for japonica variety Nipponbare gene models across the orthologous non-japonica genomic regions. Figure S3. Effect of coverage threshold to call a deletion and the total number of deletion calls for samples with various genome coverage. Figure S4. Density of presence-absence variation (PAV) per 500,000 bp window for each chromosome. Figure S5. Insertion time of LTR retrotransposon in various Oryza variety group genomes. Figure S6. Approximately Unbiased (AU) test result for a 4 population. Figure S7. Treemix result for japonica, circum-basmati, circum-aus, O. rufipogon, and outgroup O. barthii. Figure S8. Genome-wide topology weight from 500 SNP size window. Figure S9. 13 demographic models tested by a i. Figure S10. a i model fit for the best-fitting demographic model. Figure S11. Neighbor-joining phylogenetic tree of the 78 circum-basmati population sample. Figure S12. Proportion of ancestry plot for K = 2 to 5 across the 78 circum-basmati rice varieties, and the japonica and circum-aus population studied in Fig. 6c.
Steady advection-diffusion around finite absorbers in two-dimensional potential flows
Creators: name: Choi, Jaehyuk
name: Margetis, Dionisios
name: Squires, Todd M.
name: Bazant, Martin Z.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We perform an exhaustive study of the simplest, nontrivial problem in advection-diffusion -- a finite absorber of arbitrary cross section in a steady two-dimensional potential flow of concentrated fluid. This classical problem has been studied extensively in the theory of solidification from a flowing melt, and it also arises in Advection-Diffusion-Limited Aggregation. In both cases, the fundamental object is the flux to a circular disk, obtained by conformal mapping from more complicated shapes. We construct the first accurate numerical solution using an efficient new method, which involves mapping to the interior of the disk and using a spectral method in polar coordinates. Our method also combines exact asymptotics and an adaptive mesh to handle boundary layers. Starting from a well-known integral equation in streamline coordinates, we also derive new, high-order asymptotic expansions for high and low Péclet numbers ($\Pe$). Remarkably, the `high' $\Pe$ expansion remains accurate even for such low $\Pe$ as $10^{-3}$. The two expansions overlap well near $\Pe = 0.1$, allowing the construction of an analytical connection formula that is uniformly accurate for all $\Pe$ and angles on the disk with a maximum relative error of 1.75%. We also obtain an analytical formula for the Nusselt number ($\Nu$) as a function of the Péclet number with a maximum relative error of 0.53% for all possible geometries. Because our finite-plate problem can be conformally mapped to other geometries, the general problem of two-dimensional advection-diffusion past an arbitrary finite absorber in a potential flow can be considered effectively solved.
description: 29 pages, 12 figs (mostly in color)
Additional file 1 of “I definitely cannot afford to be feeling poorly if there’s no need to be”: a qualitative evaluation of antiviral uptake following suspected occupational exposure to avian influenza
Creators: name: Pae, Riinu
name: Findlater, Lucy
name: Amlôt, Richard
name: Capelastegui, Fernando
name: Dabrera, Gavin
name: Humphreys, Clare
name: Kumbang, Jharna
name: Oliver, Isabel
Publisher: name: figshare
Year: 2025
Subjects: subject: Medicine
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Supplementary Material 1: Discussion guide for interviews with exposed individuals.
Additional file 2 of Rugby Fans in Training New Zealand (RUFIT-NZ): protocol for a randomized controlled trial to assess the effectiveness and cost-effectiveness of a healthy lifestyle program for overweight men delivered through professional rugby clubs in New Zealand
Creators: name: Maddison, Ralph
name: Hargreaves, Elaine
name: Yannan Jiang
name: Calder, Amanda
name: Wyke, Sally
name: Gray, Cindy
name: Hunt, Kate
name: Lubans, David
name: Eyles, Helen
name: Draper, Nick
name: Ihirangi Heke
name: Kara, Stephen
name: Sundborn, Gerhard
name: Arandjus, Claire
name: Jenkins, Matthew
name: Marsh, Samantha
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 2. SPIRIT 2013 Checklist: Recommended items to address in a clinical trial protocol and related documents.
Time delay in a disordered topological system
Creators: name: Kang, Yuhao
name: Genack, Azriel Z.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: The discovery of topological insulators has opened new prospects for robust signal transport for electronic, phononic, and photonic devices. Though transport of topological protected edge states is robust to disorder, large fluctuations and lengthened average delay time are observed. Here, we consider a quasi-1d system following the Haldane model and generalize the idea of eigenchannel time delay to the topological system. Eigenchannel time delay indicates the excited density of states for the configuration and relates to the intensity integral inside the system. Taking advantage of this property, we point out a practical way to extract the central frequency and linewidth of localized modes excited in the topological system. This work links the fluctuation of time delay to the strength of disorder and discusses the scaling of time delay.
Point evaluation and Hardy space on a homogeneous tree
Creators: name: Alpay, Daniel
name: Volok, Dan
Publisher: name: arXiv
Year: 2003
Subjects: subject: Operator Algebras (math.OA)
subject: Functional Analysis (math.FA)
subject: FOS: Mathematics
subject: 93B28;05C05

description: We consider transfer functions of time--invariant systems as defined by Basseville, Benveniste, Nikoukhah and Willsky when the discrete time is replaced by the nodes of an homogeneous tree. The complex numbers are now replaced by a C*-algebra built from the structure of the tree. We define a point evaluation with values in this C*-algebra and a corresponding ``Hardy space'' in which a Cauchy's formula holds. This point evaluation is used to define in this context the counterpart of classical notions such as Blaschke factors. There are deep analogies with the non stationary setting as developed by the first author, Dewilde and Dym.
description: Added references, changed notations
Efficient random number generation techniques for CMOS SPAD array based devices
Creators: name: Stanco, Andrea
name: Marangon, Davide G.
name: Vallone, Giuseppe
name: Burri, Samuel
name: Charbon, Edoardo
name: Villoresi, Paolo
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: This work presents new techniques to produce true random bits by exploiting single photon time of arrival. Two FPGA-based QRNG devices are presented: Randy which uses one discrete SPAD and LinoSPAD which uses a CMOS SPAD array, along with a time-to-digital converter (TDC). Post-processing procedures are explained in order to extract randomness taking care of SPAD and TDC non-idealities. These procedures are based on the application of Peres [Y. Peres, Ann. Statist.20, 590 (1992)] and Zhou-Bruk [H. Zhou and J. Bruck, arXiv:1209.0726 (2012)] extraction algorithms. Achieved generation rates are 1.8 Mbit/s for Randy device and 310 Mbit/s for LinoSPAD device. Randy QRNG also features a real time procedure which was used for the realization of fundamental tests of physics.
description: 9 pages, 10 figures
Ulmus pumila Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Rosales
Ulmaceae
Ulmus
Ulmus pumila

description: Ulmus pumila Linnaeus, Species Plantarum 1: 226. 1753. "Habitat in Sibiria." RCN: 1847. Type not designated. Original material: Herb. Linn. No. 111.19 (S); Herb. Linn. No. 321.4 (LINN). Current name:  Ulmus pumila L. (Ulmaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part U), pp. 906-910 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 906, DOI: 10.5281/zenodo.291971
Additional file 1 of Rugby Fans in Training New Zealand (RUFIT-NZ): protocol for a randomized controlled trial to assess the effectiveness and cost-effectiveness of a healthy lifestyle program for overweight men delivered through professional rugby clubs in New Zealand
Creators: name: Maddison, Ralph
name: Hargreaves, Elaine
name: Yannan Jiang
name: Calder, Amanda
name: Wyke, Sally
name: Gray, Cindy
name: Hunt, Kate
name: Lubans, David
name: Eyles, Helen
name: Draper, Nick
name: Ihirangi Heke
name: Kara, Stephen
name: Sundborn, Gerhard
name: Arandjus, Claire
name: Jenkins, Matthew
name: Marsh, Samantha
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Science Policy

description: Additional file 1. RUFIT-NZ Trial Registration Data.
Coscinasterias calamaria
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Forcipulatida
Asteriidae
Coscinasterias
Coscinasterias calamaria

description: jehennesii Perrier, 1875, Asterias
Asterias jehennesii Perrier, 1875: 47.
Coscinasterias calamaria ‒ Clark in Clark & Mah 2001: 271.
CURRENT STATUS. — Coscinasterias calamaria (Gray, 1840).
TYPE MATERIAL. — Madagascar • holotype; Captain Cloué leg.; 1847; MNHN-IE-2014-3120.
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on page 293, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
Additional file 2 of “I definitely cannot afford to be feeling poorly if there’s no need to be”: a qualitative evaluation of antiviral uptake following suspected occupational exposure to avian influenza
Creators: name: Pae, Riinu
name: Findlater, Lucy
name: Amlôt, Richard
name: Capelastegui, Fernando
name: Dabrera, Gavin
name: Humphreys, Clare
name: Kumbang, Jharna
name: Oliver, Isabel
Publisher: name: figshare
Year: 2025
Subjects: subject: Medicine
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Supplementary Material 2: Discussion guide for focus groups with public health professionals.
Torenia mannii Skan
Creators: name: Fischer, Eberhard
name: Lachenaud, Olivier
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Lamiales
Linderniaceae
Torenia
Torenia mannii

description: Torenia mannii Skan (Hemsley & Skan 1906: 336)
 Type:— GABON (or RIO MUNI?): Sierra del Crystal, Mann 1663, 1862 (holotype K!; isotype P!).
 Material studied:— RIO MUNI: Parc National de Monte Alen, dalle rocheuse de Monte Alen 1, N 1°40’ E 10°17, frange forestière, 1130 m, 4.07.1999, Parmentier & Nguema 68 (BRLU); Parc National de Monte Alen, dalle rocheuse d’Engong, 5 km à l’ouest du village d‘Engong, N 1°37‘ E 10°18‘, frange forestière inférieure, 1100 m, 11.05.2002, Parmentier & Esono 2852 (BRLU); ibid. Parmentier & Esono 2970 (BRLU).
 Conservation status:—Vulnerable VU B2b(iii). known from only a few collections from Rio Muni and possibly Gabon.
 These three collections from Monte Alen National Park, Rio Muni, are the first records since Gustav Mann collected the type in 1862 in the “Sierra del Crystal”. The type locality is generally supposed to be in Gabon, but could equally be in Rio Muni (Equatorial Guinea), since the Crystal Mountains spread over both countries, and Mann’s itinerary is not precisely known. As there are no further records of T. mannii in Gabon, its occurence in the country needs confirmation, although it is quite likely. The species should be looked for on inselbergs, especially in the Monts de Cristal National Park, parts of which are difficult to access.
 A collection from southern Gabon (Wieringa et al. 5033, WAG) cited with doubt under T. mannii in the checklist of Gabonese vascular plants (Sosef et al. 2006), is definitely not this species (it has much smaller flowers and differently shaped leaves). However, it remains unidentified for now, having some characters of both T. thouarsii and T. dinklagei.
 The flower colour of T. mannii is recorded by Parmentier & Esono 2970 as mauve, with two white stripes on the lower lip. The label of the type specimen just states “corolla purple”.
 The species grows in fringing forest on inselbergs, at altitudes of 1100–1130 m, a habitat where T. dinklagei also occurs.
description: Published as part of Fischer, Eberhard & Lachenaud, Olivier, 2013, A new species of Torenia (Linderniaceae) from Gabon, remarks on Torenia mannii Skan, and a key to the African and Madagascan Torenia species, pp. 40-46 in Phytotaxa 125 (1) on pages 42-44, DOI: 10.11646/phytotaxa.125.1.6, http://zenodo.org/record/5085181
2D MHD modelling of compressible and heated coronal loops obtained via nonlinear separation of variables and compared to TRACE and SoHO observations
Creators: name: Petrie, G. J. D.
name: Gontikakis, C.
name: Dara, H.
name: Tsinganos, K.
name: Aschwanden, M. J.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: An analytical MHD model of coronal loops with compressible flows and including heating is compared to observational data. The model is constructed via a systematic nonlinear separation of the variables method used to calculate several classes of exact MHD equilibria in Cartesian geometry and uniform gravity. By choosing a particularly versatile solution class with a large parameter space we are able to calculate models whose loop length, shape, plasma density, temperature and velocity profiles are fitted to loops observed with TRACE, SoHO/CDS and SoHO/SUMER. Synthetic emission profiles are also calculated and fitted to the observed emission patterns. An analytical discussion is given of the two-dimenional balance of the Lorentz force and the gas pressure gradient, gravity and inertial forces acting along and across the loop. These models are the first to include a fully consistent description of the magnetic field, 2D geometry, plasma density and temperature, flow velocity and thermodynamics of loops. The consistently calculated heating profiles which are largely dominated by radiative losses are influenced by the flow and are asymmetrical being concentrated at the upflow footpoint.
description: 31 pages, 11 figures, submitted to A&A