cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Generation of induced pluripotent stem cells from the Asian bats
Creators: name: Lee, Younsu
name: Koo, Okjae
name: Saadeldin, Islam M.
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: Developmental Biology

description: Preservation of native Korean bats is crucial for maintaining ecological balance, as they play a vital role in insect control, pollination, and seed dispersal within their ecosystems. The present study details the establishment of bat induced pluripotent stem cells (BatiPSCs) from two Asian and Korean bats (Hypsugo alaschanicus and Pipistrellus abramus) using the Sendai Reprogramming Kit. Colonies of BatiPSCs, exhibiting distinctive features, were manually selected and expanded following successful transfection. Characterization of BatiPSCs revealed the expression of pluripotency markers, such as Octamer-binding transcription factor 4 (Oct4), SRY (sex-determining region Y)-box 2 and Nanog, with notably increased Oct4 levels and reduced Myc proto-oncogene expression compared with those noted in other induced pluripotent stem cell sources. BatiPSCs displayed positive staining for alkaline phosphatase and demonstrated the ability to form embryoid bodies, while also inducing teratomas in non-immune nude mice. Additionally, green fluorescent protein (GFP)-expressing BatiPSCs were generated and used for chimeric mouse production, with slight GFP signals detected in the neck region of the resulting mouse foetuses. These findings demonstrate the successful generation and characterization of BatiPSCs, emphasizing their potential applications in chimeric animal models, and the protection of endangered bat species.
MOESM3 of Physico-chemical and bacteriological quality of drinking water of different sources, Jimma zone, Southwest Ethiopia
Creators: name: Yasin, Mohammed
name: Tsige Ketema
name: Ketema Bacha
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry

description: Additional file 3: Table S3 . Correlations among measured parameters of water samples from five different water sources, Serbo town and its surroundings, 2012.
Additional file 6 of Identification of nuclear genes controlling chlorophyll synthesis inÂ barley by RNA-seq
Creators: name: Nickolay Shmakov
name: Vasiliev, Gennadiy
name: Shatskaya, Natalya
name: Doroshkov, Alexey
name: Gordeeva, Elena
name: Afonnikov, Dmitry
name: Khlestkina, Elena
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Plant Biology

description: Ontology terms associated with cellular localization of protein products for genes with higher expression level in i:BwAlm line. (PDF 52Â kb)
Additional file 1: of The association between mental health, chronic disease and sleep duration in Koreans: a cross-sectional study
Creators: name: Lee, Min-Su
name: Joon-Shik Shin
name: Jinho Lee
name: Lee, Yoon
name: Me-Riong Kim
name: Park, Ki
name: Dongjin Shin
name: Jae-Heung Cho
name: In-Hyuk Ha
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Association between sleep duration and mental health by mental health group in Korean adults aged â Ľ19Â years participating in KNHANES V. (DOCX 50 kb)
Non-maximally entangled mixed states of X and non-X types as teleportation channels
Creators: name: Bhattacharjee, Anushree
name: Roy, Sovik
name: Ali, Md. Manirul
name: Ghosh, Biplab
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Mixed spin-1/2 states violating Bell-CHSH inequality is useful for teleportation. There exist states which do not violate Bell-inequality but is still useful as teleportation channels. Maximally entangled mixed states of Munro class and Ishizaka-Hiroshima class are such types which although satisfy Bell-CHSH inequality, yet can perform better as teleportation channels for a given degree of mixedness\cite{adhikari2010}. In this work we construct class of mixed states of non-maximally entangled types whose efficacy as teleportation channels have been studied. For certain range of state parameters, these non-maximally entangled mixed states performs better as quantum teleportation channels than certain maximally entangled mixed states (such as Werner state). These constructed states, though entangled, satisfy Bell-CHSH inequality implying further that violation of local inequalities may not be good indicators of their ability to complete quantum processing tasks such as teleportation.
Additional file 2: Table S2. of Using gene expression from urine sediment to diagnose prostate cancer: development of a new multiplex mRNA urine test and validation of current biomarkers
Creators: name: Mengual, Lourdes
name: Lozano, Juan
name: Ingelmo-Torres, Mercedes
name: Izquierdo, Laura
name: Musquera, Mireia
name: MarĂ­A Ribal
name: Alcaraz, Antonio
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Marine Biology

description: Univariate logistic regression and ROC analyses of the biomarkers. (DOCX 19 kb)
The contribution of inherited maternal variation in kinesin genes to egg aneuploidy in fertility patients
Creators: name: Biswas, Leelabati
Publisher: name: No Publisher Supplied
Year: 2024

description: The female reproductive lifespan is highly dependent on egg quality, specifically euploidy, the presence of a normal number of chromosomes in an egg. However, knowledge of the precise genetic landscape that causes egg aneuploidy in women is limited, because phenotypic data on the frequency of human egg aneuploidy is difficult to obtain and therefore unrepresented in large, public genetic datasets. In Chapter 3, we identify novel genetic determinants of reproductive aging via egg aneuploidy in women using a new biobank of individual maternal exomes linked with maternal age and embryonic aneuploidy data. Our initial investigation identified 404 genes bearing variants enriched in individuals with pathological rates of egg aneuploidy. Subsequent analysis of the gene-gene interaction network topology implicated variants in genes encoding the kinesin protein family in egg aneuploidy. We interrogate this causal relationship via deep experimental perturbation. Finally, we validate that a specific patient variant in the kinesin KIF18A accelerates reproductive aging and diminishes fertility using a novel knock-in mouse model. In Chapter 4, we expand upon this work by asking how loss of KIF18A function affects oocyte meiosis and female fertility: using two murine models of KIF18A loss of function, we find that Kif18a is essential for ovarian development and that partial loss of KIF18A function increases egg aneuploidy. Together, these findings described in Chapters 3 and 4 reveal new functional mechanisms of reproductive aging, how genetic variation underlies individual heterogeneity in the female reproductive lifespan, and how genetic variation might be leveraged to predict reproductive longevity.
Convergence Acceleration of Markov Chain Monte Carlo-based Gradient Descent by Deep Unfolding
Creators: name: Hagiwara, Ryo
name: Takabe, Satoshi
Publisher: name: arXiv
Year: 2024
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Machine Learning (cs.LG)
subject: Machine Learning (stat.ML)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: This study proposes a trainable sampling-based solver for combinatorial optimization problems (COPs) using a deep-learning technique called deep unfolding. The proposed solver is based on the Ohzeki method that combines Markov-chain Monte-Carlo (MCMC) and gradient descent, and its step sizes are trained by minimizing a loss function. In the training process, we propose a sampling-based gradient estimation that substitutes auto-differentiation with a variance estimation, thereby circumventing the failure of back propagation due to the non-differentiability of MCMC. The numerical results for a few COPs demonstrated that the proposed solver significantly accelerated the convergence speed compared with the original Ohzeki method.
description: 10 pages, 5 figures
Ensiling ability of species-rich mountain swards with elevated contents of condensed tannins
Creators: name: Ineichen, Simon
name: Wyss, Ueli
name: Seiler, Andrea Barbara
name: Reidy, Beat
Publisher: name: European Grassland Federation (EGF)
Year: 2020
Subjects: biodiverse sward
fertilisation
protein fraction A
proteolysis
silage quality

description: Ensiling forage from species-rich swards is challenging due to low contents of fermentable carbohydrates and a high buffering capacity due to potential protein degradation. Species-rich swards from two mountain meadows were investigated for their fermentation quality and effects of condensed tannins (CT) on protein degradation during ensiling. Swards were obtained from two long-term fertiliser experiments located in the Swiss Alps, cut two or three times during the season of 2017. Swards were either unfertilised or fertilised with PK or NPK. Forages were wilted and ensiled in laboratory silos. Composition of nutrients, protein and CT were determined in wilted and ensiled forage. The fermentation quality was analysed >65 d post ensiling. Silages were characterised by high pH (4.60-5.19) and butyric acid content (1.5-17.8 g kg‑1 dry matter (DM)), while ammonia-N ranged from 35 to 62 g kg‑1 of total N. Protein fraction A increased by 20.7% during ensiling. Contents of CT varied from 5.0 to 18.0 g kg‑1 DM. Contents of CT were not consistently correlated to the increase in protein faction A when related to type of fertilisation or harvest.
MOESM1 of What are the effects of nature conservation on human well-being? A systematic map of empirical evidence from developing countries
Creators: name: McKinnon, Madeleine
name: Cheng, Samantha
name: Dupre, Samuel
name: Edmond, Janet
name: Garside, Ruth
name: Glew, Louise
name: Holland, Margaret
name: Levine, Eliot
name: Masuda, Yuta
name: Miller, Daniel
name: Oliveira, Isabella
name: Revenaz, Justine
name: Roe, Dilys
name: Shamer, Sierra
name: Wilkie, David
name: Supin Wongbusarakum
name: Woodhouse, Emily
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Pharmacology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: Science Policy
subject: Computational Biology

description: Additional file 1: Appendix 1. Search strategy. Table S1. List of websites searched for relevant articles. Table S2. List of academic thesis databases searched for relevant articles.
Mathilde ADS
Creators: name: Baquero Cadena, Julian David
name: Morales Veloza, Paola Andrea
Publisher: name: Universidad Externado de Colombia
Year: 2023
Subjects: subject: Mercadeo - Administración
subject: Inteligencia artificial
subject: Publicidad - Comercio
subject: Publicidad digital
subject: Pauta programática
subject: Metodologías agiles
subject: Células de trabajo

description: ADL Digital labs es un laboratorio creativo fundado en el año 2017 dedicado a realizar tareas de marketing digital y publicidad, inicialmente creado para suplir las necesidades creativas de las compañías pertenecientes al conglomerado financiero Grupo Aval y compañías pertenecientes al OLCSAL (Organización Luis Carlos Sarmiento Angulo). Para acompañar la transformación digital de la banca y empresas allegadas, ADL construyó paulatinamente el plan estratégico digital de dichas empresas, creando así Augusta y Mathilde Ads. Mathilde Ads es una plataforma de marketing que transforma, por medio de diferentes herramientas tecnológicas, la compra de pauta digital, centrándose en la efectividad y optimizando los costos de adquisición. En el tiempo que ha recorrido ADL y específicamente la célula de Mathilde Ads, se han ido encontrando con diversos tipos de adversidades y retos profesionales, las cuales se plantearán y aclararán en este documento. Finalmente, se le recomendarán, por parte de los autores, acciones tácticas y estratégicas para ayudar a resolver y transformar en oportunidades de negocios dichos inconvenientes.
description: ADL Digital labs is a creative lab founded in 2017 dedicated to perform digital marketing and advertising tasks, initially created to meet the creative needs of companies belonging to the financial conglomerate Grupo Aval and companies belonging to OLCSAL (Organización Luis Carlos Sarmiento Angulo). To accompany the digital transformation of the banking and related companies, ADL gradually built the digital strategic plan of these companies, thus creating Augusta and Mathilde Ads. Mathilde Ads is a marketing platform that transforms, through different technological tools, the purchase of digital advertising, focusing mainly on effectiveness and optimizing acquisition costs. In the time that ADL and specifically the Mathilde Ads cell, have been encountering various types of adversities and professional challenges, which will be raised and clarified in this document. Finally, the authors will recommend tactical and strategic actions to help resolve and transform these issues into business opportunities.
MOESM6 of Metabolic engineering of Escherichia coli for the production of cinnamaldehyde
Creators: name: Bang, Hyun
name: Lee, Yoon
name: Kim, Sun
name: Sung, Chang
name: Jeong, Ki
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Developmental Biology

description: Additional file 6: Figure S6. Western blot analysis of enzymes produced after cultivations using (A) anti-His-HRP and (B) anti-FLAG-HRP.
Additional file 1: Table S1. of Using gene expression from urine sediment to diagnose prostate cancer: development of a new multiplex mRNA urine test and validation of current biomarkers
Creators: name: Mengual, Lourdes
name: Lozano, Juan
name: Ingelmo-Torres, Mercedes
name: Izquierdo, Laura
name: Musquera, Mireia
name: MarĂ­A Ribal
name: Alcaraz, Antonio
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Commercial Gene Expression Assays from Life Technologies used in this study. Target exons for transcript detection as well as amplicon length for each trasncrip are shown. (DOCX 18 kb)
Rajidae
Creators: name: Straube, Nicolas
name: White, William T.
name: Ho, Hsuan-Ching
name: Rochel, Elisabeth
name: Corrigan, Shannon
name: Li, Chenhong
name: Naylor, Gavin J. P.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Elasmobranchii
Rajiformes
Rajidae

description: Family Rajidae
description: Published as part of Straube, Nicolas, White, William T., Ho, Hsuan-Ching, Rochel, Elisabeth, Corrigan, Shannon, Li, Chenhong & Naylor, Gavin J. P., 2013, A DNA sequence-based identification checklist for Taiwanese chondrichthyans, pp. 256-278 in Zootaxa 3752 (1) on page 272, DOI: 10.11646/zootaxa.3752.1.16, http://zenodo.org/record/285357
Additional file 1: of A 19-Gene expression signature as a predictor of survival in colorectal cancer
Creators: name: Aziz, Nurul Abdul
name: Norfilza Mokhtar
name: Roslan Harun
name: Md Manir Hossain Mollah
name: Rose, Isa Mohamed
name: Sagap, Ismail
name: Tamil, Azmi Mohd
name: Ngah, Wan Zurinah Wan
name: Jamal, Rahman
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer

description: a) Detection of outliers. b) Summary of permutation analysis. a) Detection of outliers. Histogram of microarray data showing the presence of outliers after detection by using the beta weight function. Samples with weight indexâ
Formal Definitions and Performance Comparison of Consistency Models for Parallel File Systems
Creators: name: Wang, Chen
name: Mohror, Kathryn
name: Snir, Marc
Publisher: name: arXiv
Year: 2024
Subjects: subject: Distributed, Parallel, and Cluster Computing (cs.DC)
subject: Operating Systems (cs.OS)
subject: FOS: Computer and information sciences

description: The semantics of HPC storage systems are defined by the consistency models to which they abide. Storage consistency models have been less studied than their counterparts in memory systems, with the exception of the POSIX standard and its strict consistency model. The use of POSIX consistency imposes a performance penalty that becomes more significant as the scale of parallel file systems increases and the access time to storage devices, such as node-local solid storage devices, decreases. While some efforts have been made to adopt relaxed storage consistency models, these models are often defined informally and ambiguously as by-products of a particular implementation. In this work, we establish a connection between memory consistency models and storage consistency models and revisit the key design choices of storage consistency models from a high-level perspective. Further, we propose a formal and unified framework for defining storage consistency models and a layered implementation that can be used to easily evaluate their relative performance for different I/O workloads. Finally, we conduct a comprehensive performance comparison of two relaxed consistency models on a range of commonly-seen parallel I/O workloads, such as checkpoint/restart of scientific applications and random reads of deep learning applications. We demonstrate that for certain I/O scenarios, a weaker consistency model can significantly improve the I/O performance. For instance, in small random reads that typically found in deep learning applications, session consistency achieved an 5x improvement in I/O bandwidth compared to commit consistency, even at small scales.
description: 15 pages. Submitted to IEEE TPDS
Additional file 1: Table S1. of Altered localization and functionality of TAR DNA Binding Protein 43 (TDP-43) in niemann- pick disease type C
Creators: name: A. Dardis
name: S. Zampieri
name: S. Canterini
name: K. Newell
name: C. Stuani
name: J. Murrell
name: B. Ghetti
name: M. Fiorenza
name: B. Bembi
name: E. Buratti
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Developmental Biology

description: Sequence of primers used in real-time quantitative PCR. (DOC 40 kb)
Additional file 2: Table S2. of Assessment of Theileria equi and Babesia caballi infections in equine populations in Egypt by molecular, serological and hematological approaches
Creators: name: Mahmoud, Mona
name: El-Ezz, Nadia
name: Sobhy Abdel-Shafy
name: Nassar, Somia
name: Namaky, Amira El
name: Wagdy Khalil
name: Knowles, Don
name: Kappmeyer, Lowell
name: Silva, Marta
name: Suarez, Carlos
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Percentage of the DNA identity among reference gene (GenBank accession number AF092736) and the 2-5, 1-1 and 87-3 rap-1 full size Egyptian isolates (GenBank accession number KR811097, KR811095 and KR811096). (DOCX 11Â kb)
Additional file 1: of Urgent referral for suspected CNS cancer: which clinical features are associated with a positive predictive value of 3Â % or more?
Creators: name: Mohammad, Hasan
name: Boardman, Jeremy
name: Howell, Laura
name: Mills, Roger
name: Emsley, Hedley
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Biotechnology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Appendix. Raw data calculations. (DOCX 31 kb)
Additional file 1 of Reconstruction of gene networks using prior knowledge
Creators: name: Ghanbari, Mahsa
name: Lasserre, Julia
name: Vingron, Martin
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Supplementary material. (PDF 180 KB)
Comment on "Source of black bounces in Rastall gravity''
Creators: name: Rodrigues, Manuel E.
name: Silva, Marcos V. de S.
Publisher: name: arXiv
Year: 2024
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: In Atazadeh and Hadi (JCAP \textbf{01}, 067 (2024)), the authors proposed that black bounce solutions, such as the Simpson-Visser and the Bardeen-type spacetimes, can be obtained from Rastall gravity. To achieve these spacetimes, the authors consider the presence of a phantom scalar field with nonlinear electrodynamics. However, in this comment, we obtained different electromagnetic Lagrangians from the original work. The most problematic issue is not the incorrect expression of the electromagnetic Lagrangian itself. We show that the method obtains electromagnetic functions that are inconsistent. To obtain the black bounce spacetimes as solutions of Rastall gravity, it is necessary to consider an isotropic fluid, combined with the nonlinear electrodynamics and the phantom scalar field.
description: Comment on arXiv:2311.07637. V2: Some typos corrected. Version published in JCAP
Additional file 1: Figure S1. of Transcriptome-wide analysis supports environmental adaptations of two Pinus pinaster populations from contrasting habitats
Creators: name: Cañas, Rafael
name: Feito, Isabel
name: Fuente-Maqueda, José
name: Ávila, Concepción
name: Majada, Juan
name: Cánovas, Francisco
Publisher: name: Figshare
Year: 2015
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Phenotypes of Leiria and Tamrabta plantlets. Tammrabta in the left side and Leiria in the right side. Figure S2. Location of the provenances, Leiria and Tamrabta. Map was adapted from the European Forest Genetic Resources Programme (EUFORGEN, http://www.euforgen.org/ ). Figure S3. Multidimensional scaling (MDS) plot for microarray samples. Figure S4. KEGG metabolism overview map. Note S1. Limma R script. Note S2. EdgeR R script. Note S3. Gene dataset used in the KAAS software. (PDF 907 kb)
Additional file 1: of NKTR-102 Efficacy versus irinotecan in a mouse model of brain metastases of breast cancer
Creators: name: Adkins, Chris
name: Nounou, Mohamed
name: Tanvirul Hye
name: Afroz Mohammad
name: Terrell-Hall, Tori
name: Mohan, Neel
name: Eldon, Michael
name: Hoch, Ute
name: Lockman, Paul
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Supplementary methods contains fine details of various protocols and assays used in this work. (PDF 91Â kb)
Ascalaboidae Arratia 2016, n. fam.
Creators: name: Arratia, G.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Ascalaboidae

description: Ascalaboidae n. fam.
Diagnosis (based on a unique combination of characters; uniquely derived features among basal teleosts are identified with an asterisk [*]): Small teleosts of about 115 mm maximum length. Maxilla with external row of small conical teeth increasing in size posteriorly [*]. Supramaxilla 2 with a large, broad body and a narrow, long dorsoanterior process covering most of dorsal border of the long supramaxilla 1. Large, narrow opercle, almost 4 times deeper than subopercle. No gular plate. Low number of vertebrae, 34 to 39 [*]. Deep and narrow supracleithrum, deeper than opercle [*]. Vertebral centrum formation of caudal region including paired chordacentra (pseudo-diplospondyly) that fuse forming one chordacentrum that is later surrounded by an autocentrum [*]. Broad first dorsal pterygiophore with a peculiar fan-like shape with three or more anteroventral processes [*]. Preural ural centrum 1 and ural centrum 1 with short neural spines. High number of hypurals, nine or more. Six to eight uroneurals. Cycloid scales with circuli in anterior field and no radii.
 Derivation of name: The family name derives from the genus name Ascalabos.
 Content: Ascalabos voithii Graf zu Münster, 1839b and Ebertichthys ettlingensis, n. gen. et n. sp. (A few specimens preliminarily identify as Ascalabos -like have been recovered in Wattendorf and are in the process of being described. Another possible candidate is Anaethalion cirinensis Gaudant, 1968 from Cerin, France, which currently is under revision.) Geographical distribution and age: Southern Germany, Bavaria (Fig. 1). Upper Jurassic, Kimmeridgian (Wattendorf), Kimmeridgian–Lower Tithonian? (Ettling), and Tithonian (e.g., Eichstätt).
description: Published as part of Arratia, G., 2016, New remarkable Late Jurassic teleosts from southern Germany: Ascalaboidae n. fam., its content, morphology, and phylogenetic relationships, pp. 31-59 in Fossil Record 19 (1) on page 33, DOI: 10.5194/fr-19-31-2016, http://zenodo.org/record/11045855
Additional file 2: Figure S2. of Neurogenomics and the role of a large mutational target on rapid behavioral change
Creators: name: Stanley, Craig
name: Kulathinal, Rob
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Frequency distributions of gene lengths for neurogenic genes, across multiple taxa. (DOC 315 kb)
Considérations croisées dans les études évaluant les muscles du plancher pelvien au moyen d’un EMG : examen de portée
Creators: name: König, Irene
name: Flury, Noémie
name: Radlinger, Lorenz
Publisher: name: Elsevier
Year: 2017

description: Introduction L’électromyographie de surface utilisant des sondes intra-vaginales est d’usage largement répandu pour évaluer l’activité des muscles du plancher pelvien chez la femme. Bien qu’elle soit considérée comme une méthode fiable, sa validité a été remise en question du fait de la présence d’un phénomène dénommé diaphonie. La diaphonie est définie comme le fait d’enregistrer une activité électromyographique de surface provenant de muscles voisins plutôt que celle provenant des muscles considérés. Le but de cette étude était de recenser la littérature existante sur la diaphonie pendant les enregistrements électromyographiques de surface intra-vaginaux. Méthode Une étude de portée a été réalisée selon le cadre de travail d’Arksey et O’Malley. Une recherche électronique a été faite dans six bases de données : MEDLINE/Pubmed, EMBASE, CINAHL, PEDro, Cochrane et Google Scholar. De plus, les auteurs ont été directement contactés pour identifier la documentation parallèle ou « littérature grise ». L’extraction de données a consisté en une analyse numérique descriptive et en une analyse thématique ; elles ont été réalisées par deux évaluateurs indépendants. Résultats Quarante-neuf références écrites par 34 auteurs venant de 13 pays constituent les éléments de référence de cette recherche. L’analyse thématique a permis d’identifier 8 thèmes principaux. Les matériaux inclus varient fortement en termes de méthodologie, d’approche du problème de diaphonie et de profondeur d’analyse. Conclusions Une lacune affecte notre connaissance quant à la validité des méthodes actuelles de recherche électromyographique de surface. La documentation traitant du problème de diaphonie est rare et souvent sujette à caution. Des conclusions définitives sont régulièrement tirées à partir de preuves insuffisantes. Signification De hauts niveaux de diaphonie jettent des doutes sur la validité des études expérimentales qui mesurent l’efficacité des interventions sur le muscle du plancher pelvien. Des recherches complémentaires sont nécessaires, bien qu’il ne soit pas certain que la technologie actuelle permette de trancher ce problème.
MOESM2 of Protocol: optimisation of a grafting protocol for oilseed rape (Brassica napus) for studying long-distance signalling
Creators: name: Ostendorp, Anna
name: Pahlow, Steffen
name: Deke, Jennifer
name: ThieĂ, Melanie
name: Kehr, Julia
Publisher: name: Figshare
Year: 2016
Subjects: subject: Physiology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2: FigureÂ S2. Development of B. napus cv. Licosmos after 20Â days in hydroponic culture, regenerated under different conditions.
Additional file 1: of Types of health care facilities and the quality of primary care: a study of characteristics and experiences of Chinese patients in Guangdong Province, China
Creators: name: Ruwei Hu
name: Liao, Yu
name: Zhicheng Du
name: Yuantao Hao
name: Hailun Liang
name: Leiyu Shi
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology

description: Multistage Cluster Sampling Method. (DOCX 125Â kb)
Clearing the fog: How circular economy transition can be measured at the company level
Creators: name: Stucki, Tobias
name: Woerter, Martin
name: Loumeau, Nicole
Publisher: name: Elsevier
Year: 2023
Subjects: Circular economy
Sustainability transition
Company level data
Empirical concept
Quantitative analysis

description: How far has the transition process to a circular economy progressed? How can this transition process be promoted? So far, the indicators used to analyse such questions have mostly been based on aggregate recycling rates or waste volumes. However, circular economy is much more than that. This paper develops a concept for empirically measuring the transition process along a company’s value chain. The concept distinguishes 27 business activities that are relevant for the circular economy and thus enables detailed statements about the transition to the circular economy along the entire value chain and the three dimensions of the circular economy, i.e. efficiency, closing the resource loop and extending product life. Based on this concept, a representative survey of 8,000 Swiss companies was conducted. The data allow – for the first time and for a representative sample – the analysis of the determinants of the transition process to a circular economy using econometric estimations. The results suggest that the transition process has just started; most companies involved in circular economy activities focus on efficiency enhancing measures rather than on extending the life of products/services or closing the loop. In addition, the results show that circular economy pioneers are characterized by a willingness to invest a significant amount of available capital in the breadth of circular activities, have greater financial flexibility, and in some cases face greater non-price competition. Ultimately, the results suggest that the transition to a circular economy can only be successful if the necessary framework conditions are set in such a way that it is profitable for the company to significantly increase the degree of circularity.
Additional file 1: Figure S1. of Neurogenomics and the role of a large mutational target on rapid behavioral change
Creators: name: Stanley, Craig
name: Kulathinal, Rob
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Neural vs. non-neural gene length in ctenophores. (DOC 76 kb)
Analysis of Poplar’s (Populus nigra ita.) Root Systems for Quantifying Bio-Engineering Measures in New Zealand Pastoral Hill Country
Creators: name: Ngo, Ha My
name: Van Zadelhoff, Feiko Bernard
name: Gasparini, Ivo
name: Plaschy, Julien
name: Flepp, Gianluca
name: Dorren, Luuk
name: Phillips, Chris
name: Giadrossich, Filippo
name: Schwarz, Massimiliano
Publisher: name: MDPI
Year: 2023
Subjects: root reinforcement model
root distribution model
root bundle model
shallow landslides
poplar
forestry management

description: Populus nigra ita. is an important tree species for preventing rainfall-triggered shallow landslides and hydraulic bank erosion in New Zealand. However, the quantification of its spatial root distribution and reinforcement remains challenging. The objective of this study is to calibrate and validate models for the spatial upscaling of root distribution and root reinforcement. The data were collected in a 26-year-old “Tasman” poplar stand at Ballantrae Hill Country Research Station in New Zealand. We assessed root distribution at different distances from the stem of four poplar trees and from eleven soil pits along a transect located in a sparse to densely planting poplar stand. 124 laboratory tensile tests and 66 field pullout tests on roots with diameters up to 0.04 m were carried out to estimate root mechanical properties. The results show that the spatial distribution of roots can be well predicted in trenches of individual tree root systems (R2 = 0.78), whereas it tends to overestimate root distribution when planting density was higher than 200 stems per hectare. The root reinforcement is underestimated within single tree root systems (R2 = 0.64), but it performs better for the data along the transect. In conclusion, our study provided a unique and detailed database for quantifying root distribution and reinforcement of poplars on a hillslope. The implementation of these models for the simulation of shallow landslides and hydraulic bank erosion is crucial for identifying hazardous zones and for the prioritization of bio-engineering measures in New Zealand catchments. Results from this study are useful in formulating a general guideline for the planning of bio-engineering measures considering the temporal dynamics of poplar’s growth and their effectiveness in sediment and erosion control.
Additional file 2: of High-quality draft genome sequence of a new phytase-producing microorganism Pantoea sp. 3.5.1
Creators: name: Suleimanova, Aliya
name: Toymentseva, Anna
name: Boulygina, Eugenia
name: Kazakov, Sergey
name: Ayslu Mardanova
name: Balaban, Nelly
name: Sharipova, Margarita
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biophysics
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Biotechnology
subject: Evolutionary Biology
subject: Ecology
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Average nucleotide identity (ANI) values calculated between the 3.5.1 genome assembly, 26 Pantoea species and 2 E. coli strains. Maximum and minimum ANI values are highlighted by yellow color. ANI values of E. coli strains are shown in grey. The corresponding GenBank accession numbers for genome sequences are: NZ_KK403338 (P. agglomerans Eh318), NZ_JPOT00000000 (P. agglomerans 4), NZ_ASJI00000000 (P. agglomerans Tx-10), NZ_JNGC00000000 (P. agglomerans 190), NZ_JPKQ00000000 (P. agglomerans MP2), NC_017554 (P. ananatis PA13), NZ_ASJH00000000 (P. ananatis BRT175), NC_013956 (P. ananatis LMG-20103), NC_016816 (P. ananatis LMG-5342), NC_017531 (P. ananatis AJ13355), NZ_JXXL00000000 (P. anthophila 11â  2), NZ_AVSS00000000 (P. dispersa EGD AAK13), NZ_JTJJ00000000 (P. rodasii ND03), NZ_CP009454 (P. rwandensis ND04), NZ_JFGT00000000 (Pantoea sp. IMH), NZ_CP009880 (Pantoea sp. PSNIH1), NZ_CP009866 (Pantoea sp. PSNIH2), NZ_AJFP00000000 (Pantoea sp. Sc1), NC_014837 (Pantoea sp. At-9b), NZ_AEDL00000000 (Pantoea sp. aB), NZ_JSXF00000000 (P. stewartii M073a), NZ_JRWI00000000 (P. stewartii M009), NZ_JPKO00000000 (Pantoea stewartii subsp. indologenes LMG 2632), NZ_AHIE00000000 (Pantoea stewartii subsp. stewartii DC283), NC_014562.1 (P. vagans C9-1), NZ_JPKP00000000 (P. vagans MP7), NC_000913 (E. coli str. K12 substr. MG1655), NC_002695 (E. coli O157:H16 Santai). (DOCX 13Â kb)
Munida quadrispina Benedict 1902
Creators: name: Hendrickx, Michel E.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Galatheidae
Munida
Munida quadrispina

description: Munida quadrispina Benedict, 1902
(Fig. 4)
Munida quadrispina.— Fierro Rengifo et al., 2008: 6 (list); Wicksten, 2012: 147, fig. 34E, pl. 7B.
Material examined. St. 17 (31°37.75’N, 116°45.807´W), April 18, 2005, 247 m, one female (CL, 35.0 mm; CLwr, 27.4 mm; RCh, 62 mm; LCh, 62 mm) and one female (CL, 38.1 mm; CLwr, 29.5 mm; RCh, 68 mm; Lch, 74 mm) (ICML-EMU-12827) (Fig. 1).
Distribution. From Sitka, Alaska, USA, to Los Coronados Islands, west coast of the Baja California Peninsula, Mexico (Wicksten 2012). This is the second record of M. quadrispina in western Mexico. In depth of 12‒1463 m (Wicksten 2012).
Remarks. Hendrickx (2003) re-examined the male lectotype of M. quadrispina, concluding this is a rather variable species. However, a list of diagnostic characters allowing to separate M. quadrispina from all other eastern Pacific species of the genus was provided and the specimen examined herein coincide with all of these. The chelipeds of the specimen examined, however, are comparatively more spinose than in the lectotype and with many trifid rugae. The largest size of record for M. quadrispina is 67 mm CL (Wicksten 2012), almost twice as large as the largest specimen examined herein.
description: Published as part of Hendrickx, Michel E., 2021, Squat lobsters (Crustacea: Decapoda: Anomura: Galatheoidea) from off the northwestern coast of the Baja California Peninsula, Mexico, pp. 375-384 in Zootaxa 4965 (2) on pages 380-381, DOI: 10.11646/zootaxa.4965.2.10, http://zenodo.org/record/4749773
Additional file 2: Table S1. of Exposure of the mosquito vector Culex pipiens to the malaria parasite Plasmodium relictum: effect of infected blood intake on immune and antioxidant defences, fecundity and survival
Creators: name: Delhaye, Jessica
name: Consolée Aletti
name: Glaizot, Olivier
name: Christe, Philippe
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Detailed model structures and initial full models prior to model selection. For each response variable (blood meal size, clutch size, survival and laying probability), details are given about which females (♀) have been considered, the model type as well as the fixed and the random factors considered. a for each response variable, the same models were also ran considering females under low and high exposure only, replacing exposure level by bird parasitaemia and removing canary identity from the random factors. b Abbreviations: dpf: days post-feeding, NOS: nitric oxide synthase, SOD: superoxide dismutase, G6PDH: glucose-6-phosphate dehydrogenase. (DOCX 13 kb)
Why E.T. Can't Phone Home: A Global View on IP-based Geoblocking at VoWiFi
Creators: name: Gegenhuber, Gabriel Karl
name: Frenzel, Philipp
name: Weippl, Edgar
Publisher: name: arXiv
Year: 2024
Subjects: subject: Networking and Internet Architecture (cs.NI)
subject: Cryptography and Security (cs.CR)
subject: FOS: Computer and information sciences

description: In current cellular network generations (4G, 5G) the IMS (IP Multimedia Subsystem) plays an integral role in terminating voice calls and short messages. Many operators use VoWiFi (Voice over Wi-Fi, also Wi-Fi calling) as an alternative network access technology to complement their cellular coverage in areas where no radio signal is available (e.g., rural territories or shielded buildings). In a mobile world where customers regularly traverse national borders, this can be used to avoid expensive international roaming fees while journeying overseas, since VoWiFi calls are usually invoiced at domestic rates. To not lose this revenue stream, some operators block access to the IMS for customers staying abroad.
 This work evaluates the current deployment status of VoWiFi among worldwide operators and analyzes existing geoblocking measures on the IP layer by measuring connectivity from over 200 countries. We show that a substantial share (IPv4: 14.6%, IPv6: 65.2%) of operators implement geoblocking at the DNS- or VoWiFi protocol level, and highlight severe drawbacks in terms of emergency calling service availability.
Additional file 2: Table S1. of Draft genome sequence of Janthinobacterium lividum strain MTR reveals its mechanism of capnophilic behavior
Creators: name: Valdes, Natalia
name: Soto, Paola
name: Cottet, Luis
name: Alarcon, Paula
name: Gonzalez, Alex
name: Castillo, Antonio
name: Corsini, Gino
name: Tello, Mario
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: The table shows the ANI values among the strain analyzed. ANI values were calculated according to Goris et al. 2007 (Goris J., Konstantinidis K., Klappenbach J., Coenye T., Vandamme P., Tiedje J. DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol. 2007 57(Pt 1):81â  91), using web application (http://enve-omics.ce.gatech.edu/ani/) (Figueras M., Beaz-Hidalgo R., Hossain M., Liles M. Taxonomic affiliation of new genomes should be verified using average nucleotide identity and multilocus phylogenetic analysis. Genome Announc. 2014 2(6). pii: e00927-14. doi: 10.1128/genomeA.00927-14 ). (DOC 235Â kb)
Additional file 1: of Perceptions about the relative importance of patient care-related topics: a single institutional survey of its anesthesiologists, nurse anesthetists, and surgeons
Creators: name: Vetter, Thomas
name: Joydip Barman
name: Boudreaux, Arthur
name: Jones, Keith
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Perioperative Risk Optimization and Management Planning Tool (PROMPTâ ˘) Qualitative Clinician Survey. (PDF 65 kb)
Triaxial Schwarzschild Models of NGC 708: a 10-billion solar mass black hole in a low dispersion galaxy with a Kroupa IMF
Creators: name: de Nicola, Stefano
name: Thomas, Jens
name: Saglia, Roberto P.
name: Kluge, Matthias
name: Snigula, Jan
name: Bender, Ralf
Publisher: name: arXiv
Year: 2024
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We report the discovery of a $(1.0 \pm 0.28) \times 10^{10}$ M$_\odot$ Supermassive Black Hole (BH) at the centre of NGC 708, the Brightest Cluster Galaxy of Abell 262. Such high BH masses are very rare and allow to investigate BH - host galaxy scaling relations at the high mass end, which in turn provide hints about the (co)evolution of such systems. NGC~708 is found to be an outlier in all the canonical scaling relations except for those linking the BH mass to the core properties. The galaxy mass-to-light ratio points to a Kroupa IMF rather than Salpeter, with this finding confirmed using photometry in two different bands. We perform this analysis using our novel triaxial Schwarzschild code to integrate orbits in a 5-dimensional space, using a semi-parametric deprojected light density to build the potential and non-parametric Line-of-Sight Velocity Distributions (LOSVDs) derived from long-slit spectra recently acquired at Large Binocular Telescope (LBT) to exploit the full information in the kinematic. We find that the galaxy geometry changes as a function of the radius going from prolate, nearly spherical in the central regions to triaxial at large radii, highlighting the need to go beyond constant shape profiles. Our analysis is only the second of its kind and will systematically be used in the future to hunt Supermassive Black Holes in giant ellipticals.
description: 19 pages, 19 figures, published by MNRAS