cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
DeFCoM: analysis and modeling of transcription factor binding sites using a motif-centric genomic footprinter
Creators: name: Furey, Terrence S.
name: Quach, Bryan
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2016

description: Identifying the locations of transcription factor binding sites is critical for understanding how gene transcription is regulated across different cell types and conditions. Chromatin accessibility experiments such as DNaseI sequencing (DNase-seq) and Assay for Transposase Accessible Chromatin sequencing (ATAC-seq) produce genome-wide data that include distinct "footprint" patterns at binding sites. Nearly all existing computational methods to detect footprints from these data assume that footprint signals are highly homogeneous across footprint sites. Additionally, a comprehensive and systematic comparison of footprinting methods for specifically identifying which motif sites for a specific factor are bound has not been performed. Using DNase-seq data from the ENCODE project, we show that a large degree of previously uncharacterized site-to-site variability exists in footprint signal across motif sites for a transcription factor. To model this heterogeneity in the data, we introduce a novel, supervised learning footprinter called DeFCoM (Detecting Footprints Containing Motifs). We compare DeFCoM to nine existing methods using evaluation sets from four human cell-lines and eighteen transcription factors and show that DeFCoM outperforms current methods in determining bound and unbound motif sites. We also analyze the impact of several biological and technical factors on the quality of footprint predictions to highlight important considerations when conducting footprint analyses and assessing the performance of footprint prediction methods. Lastly, we show that DeFCoM can detect footprints using ATAC-seq data with similar accuracy as when using DNase-seq data. Python code available at https://bitbucket.org/bryancquach/defcom CONTACT: bquach@email.unc.edu or tsfurey@email.unc.edu SUPPLEMENTARY INFORMATION: Supplementary information available at Bioinformatics online.
A Historic Context for Native American Procurement of Obsidian in the State of Utah
Creators: name: Jackson, Robert
name: Spidell, Jason
name: Kennelly-Spidell, Deidre
name: Kovak, Amy
Publisher: name: Pacific Legacy, Inc.
Year: 2009
Subjects: subject: Obsidian
valueUri: https://core.tdar.org/browse/material-type/89/obsidian
subject: Archaeological Overview
valueUri: https://core.tdar.org/browse/investigation-type/1/archaeological-overview
subject: Historic Background Research
valueUri: https://core.tdar.org/browse/investigation-type/18/historic-background-research
subject: Heritage Management
valueUri: https://core.tdar.org/browse/investigation-type/24/heritage-management

description: Obsidian is a naturally occurring volcanic glass that occurs at many locations in western Utah. It was an important natural resource used by Native Americans as a raw material in stone tool production for millennia, and obsidian stone tools and manufacturing debitage occur within site assemblages dating from the Paleo-Indian period until the Proto-historic period (Macdonald 1994). The many obsidian quarries and related stone tool manufacturing sites associated with Utah's obsidian sources document 12,000 or more years of Native American use of this material, testifying the importance and value placed on this resource. A total of thirteen obsidian sources have been identified within the state of Utah. Most of these obsidian sources are situated on federal lands managed by the Bureau of Land Management (BLM), and many of these sources are affected by a variety of contemporary land use practices. Historic preservation statutes, including Sections 106 and 110 of the National Historic Preservation Act, require the BLM to: (1) consider the effects of their actions on properties listed or eligible for the National Register of Historic Places (historic properties) pursuant to 36 CFR 800; and (2) provide stewardship to historic properties on federal lands. This historic context was developed to assist the BLM in meeting these requirements. Treatment of important cultural resources such as obsidian sources should take into account their cultural value or significance. The value of such resources is most readily identified when considered in an historic context. This document defines a historic context for the prehistoric human procurement of obsidian in the State of Utah that began 12,000 or more years ago and extended to the period of contact with Euro-Americans and the disruption of traditional Native American lifeways in the mid-19th century. This historic context describes each of the 13 obsidian sources in Utah and provides a framework for evaluating archaeological resources associated with those obsidian sources. Management recommendations are offered for obsidian sources on federal land. This document is intended as a springboard for future research on Utah's obsidian sources by offering basic descriptions, and common methods and terms for studying the obsidian sources.
FastHiC: a fast and accurate algorithm to detect long-range chromosomal interactions from Hi-C data
Creators: name: Zhang, Guosheng
name: Li, Yun
name: Hu, Ming
name: Xu, Zheng
name: Wu, Cong
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2016

description: Motivation: How chromatin folds in three-dimensional (3D) space is closely related to transcription regulation. As powerful tools to study such 3D chromatin conformation, the recently developed Hi-C technologies enable a genome-wide measurement of pair-wise chromatin interaction. However, methods for the detection of biologically meaningful chromatin interactions, i.e. peak calling, from Hi-C data, are still under development. In our previous work, we have developed a novel hidden Markov random field (HMRF) based Bayesian method, which through explicitly modeling the non-negligible spatial dependency among adjacent pairs of loci manifesting in high resolution Hi-C data, achieves substantially improved robustness and enhanced statistical power in peak calling. Superior to peak callers that ignore spatial dependency both methodologically and in performance, our previous Bayesian framework suffers from heavy computational costs due to intensive computation incurred by modeling the correlated peak status of neighboring loci pairs and the inference of hidden dependency structure.
Trickserei: Scorseses "Letzte Versuchung Christi" erregt die Gemüter
Creators: name: Nientiedt, Klaus
Publisher: name: Herder Korrespondenz
Year: 1970

description: Herder Korrespondenz, Bd. 42 Nr. 11 (1988): Herder Korrespondenz, Band 42, Heft 11
Summary Report of Cultural Resources Inspection: Kern River 2003 Expansion Project - Utah
Creators: name: Fernandez, Rachel
Publisher: name: Bureau of Land Management, Utah State Office
Year: 2005
Subjects: subject: Juab (County)
valueUri: https://core.tdar.org/browse/geographic-keyword/3774/juab-county
subject: Millard (County)
valueUri: https://core.tdar.org/browse/geographic-keyword/3714/millard-county
subject: Beaver (County)
valueUri: https://core.tdar.org/browse/geographic-keyword/3715/beaver-county
subject: Iron (County)
valueUri: https://core.tdar.org/browse/geographic-keyword/3731/iron-county
subject: Washington (County)
valueUri: https://core.tdar.org/browse/geographic-keyword/3508/washington-county
subject: Salt Lake (County)
valueUri: https://core.tdar.org/browse/geographic-keyword/3686/salt-lake-county
subject: Utah (County)
valueUri: https://core.tdar.org/browse/geographic-keyword/3720/utah-county
subject: Kern River 2003 Expansion Project
valueUri: https://core.tdar.org/browse/other-keyword/169830/kern-river-2003-expansion-project
subject: Archaeological Overview
valueUri: https://core.tdar.org/browse/investigation-type/1/archaeological-overview
subject: Heritage Management
valueUri: https://core.tdar.org/browse/investigation-type/24/heritage-management

description: Bureau of Land Management, Utah State Office Summary Report of Cultural Resources Inspection for the Kern River 2003 Expansion project. A total of 330 sites were recorded as part of the project, with 131 sites eligible for the National Register. The report also includes correspondence from SWCA Environmental Consultants to the Bureau of Land Management - Utah State Office regarding the final report.
Vorstoß: Kardinal Lustiger fordert religiöse Erziehung an Frankreichs Schulen
Creators: name: Nientiedt, Klaus
Publisher: name: Herder Korrespondenz
Year: 1970

description: Herder Korrespondenz, Bd. 42 Nr. 11 (1988): Herder Korrespondenz, Band 42, Heft 11
DSE: Conflict, lingering attachment, parent adjustment, and parent-child interactions after divorce
Creators: name: O'Hara, Karey
name: Sbarra, David
name: Mehl, Matthias
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Social and Behavioral Sciences

description: This secondary data analysis study seeks to test the well-documented phenomenon of the "spillover effect," where parents' experience of emotional distress or well-being after divorce can impact their interactions with their children. We will use data from a larger, longitudinal study of adult adjustment after divorce. In addition, we will explore the role of theoretical predictors and mediational processes that may further elucidate the nature of the spillover phenomenon.
Uncertainty Quantification for Neutrino Opacities in Core-Collapse Supernovae and Neutron Star Mergers
Creators: name: Lin, Zidu
name: Steiner, Andrew W.
name: Margueron, Jerome
Publisher: name: arXiv
Year: 2022
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We perform an extensive study of the correlations between the neutrino-nucleon inverse mean free paths (IMFPs) and the underlying equation of states (EoSs). Strong interaction uncertainties in the neutrino mean free path are investigated in different density regimes. The nucleon effective mass, the nucleon chemical potentials, and the residual interactions in the medium play an important role in determining neutrino-nucleon interactions in a density-dependent manner. We study how the above quantities are constrained by an EoS consistent with (i) nuclear mass measurements, (ii) proton-proton scattering phase shifts, and (iii) neutron star observations. We then study the uncertainties of both the charged current and the neutral current neutrino-nucleon inverse mean free paths due to the variation of these quantities, using Hartree-Fock+random phase approximation method. Finally, we calculate the Pearson correlation coefficients between (i) the EoS-based quantities and the EoS-based quantities; (ii) the EoS-based quantities and the IMFPs; (iii) the IMFPs and the IMFPs. We find a strong impact of residual interactions on neutrino opacity in the spin and spin-isospin channels, which are not well constrained by current nuclear modelings.
description: Change the figure styles; correct several typos in text; accepted by PRC
Zwiespalt: der Deutsche Juristentag und die nichtehelichen Lebensgemeinschaften
Creators: name: Seeber, David A.
Publisher: name: Herder Korrespondenz
Year: 1970

description: Herder Korrespondenz, Bd. 42 Nr. 11 (1988): Herder Korrespondenz, Band 42, Heft 11
title: Pediatric PET-CT: Advantages and drawbacks of an imagen test performed in especially vulnerable patients.
Creators: name: Paniagua González, Miguel
Publisher: name: European Congress of Radiology
Year: 2016
Subjects: subject: Neoplasia
subject: Multidisciplinary cancer care
subject: Lymphoma
subject: Molecular imaging
subject: Diagnostic procedure
subject: Comparative studies
subject: PET-CT
subject: Paediatric

description: Learning objectives Background Findings and procedure details Conclusion Personal information References
description: Learning objectives: Explain the technical principles of PET-CT, as well as the advantages it can offer. Define the most frequent indications of PET-CT in pediatric population. Expose the drawbacks and difficulties of this imaging test in such a vulnerable age...
Trigger and readout electronics for the STEREO experiment
Creators: name: Bourrion, O.
name: Bouly, J. L.
name: Bouvier, J.
name: Bosson, G.
name: Helaine, V.
name: Lamblin, J.
name: Li, C.
name: Montanet, F.
name: Real, J. S.
name: Salagnac, T.
name: Ponchant, N.
name: Stutz, A.
name: Tourres, D.
name: Vescovi, C.
name: Zsoldos, S.
Publisher: name: arXiv
Year: 2015
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: FOS: Physical sciences

description: The STEREO experiment will search for a sterile neutrino by measuring the anti-neutrino energy spectrum as a function of the distance from the source, the ILL nuclear reactor. A dedicated electronic system, hosted in a single microTCA crate, was designed for this experiment. It performs triggering in two stages with various selectable conditions, processing and readout via UDP/IPBUS of 68 photomultiplier signals continuously digitized at 250 MSPS. Additionally, for detector performance monitoring, the electronics allow on-line calibration by driving LED synchronously with the data acquisition. This paper describes the electronics requirements, architecture and the performances achieved.
description: Topical Workshop on Electronics for Particle Physics (TWEPP) 2015, Lisboa. 9 pages, 9 figures
Attachment, Daily Relationship Mindfulness, and Relationship Behaviors
Creators: name: HARP Lab
name: Stanton, Sarah
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Social Psychology
subject: Social and Behavioral Sciences
subject: Psychology
subject: FOS: Psychology
subject: attachment
subject: dyadic data
subject: longitudinal
subject: mindfulness
subject: relationships

description: This preregistration includes the hypotheses and analytic plan document for this project.
title: Mediastinum, reviewing the epidemiologic aproach: More than lines, bands and interfaces
Creators: name: Sossa, Didier
Publisher: name: European Congress of Radiology
Year: 2016
Subjects: subject: Thorax
subject: Mediastinum
subject: Respiratory system
subject: Conventional radiography
subject: CT
subject: MR
subject: Statistics
subject: Epidemiology
subject: Education and training
subject: Neoplasia

description: Learning objectives Background Findings and procedure details Conclusion Personal information References
description: Learning objectives: To propose a radiological diagnostic approach from chestradiograph through the epidemiology of the mediastinum landmarks. To explain differential diagnosis for mediastinal masses according its prevalence by age and mediastinal localization. To...
Genefu: an R/Bioconductor package for computation of gene expression-based signatures in breast cancer
Creators: name: Gendoo, Deena M. A.
name: Haibe-Kains, Benjamin
name: Parker, Joel S.
name: Paré, Laia
name: Prat, Aleix
name: Schröder, Markus S.
name: Ratanasirigulchai, Natchar
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2016

description: Breast cancer is one of the most frequent cancers among women. Extensive studies into the molecular heterogeneity of breast cancer have produced a plethora of molecular subtype classification and prognosis prediction algorithms, as well as numerous gene expression signatures. However, reimplementation of these algorithms is a tedious but important task to enable comparison of existing signatures and classification models between each other and with new models. Here, we present the
An Archaeological Analysis of the Prehistoric Fremont Culture for the Purpose of Assessing Cultural Affiliation with Ten Claimant Tribes
Creators: name: Berry, Michael S.
name: Berry, Claudia F.
Year: 2003
Subjects: subject: Paiute Indian Tribe of Utah
valueUri: https://core.tdar.org/browse/culture-keyword/9566/paiute-indian-tribe-of-utah
subject: Kaibab Band of Paiute Indians
valueUri: https://core.tdar.org/browse/culture-keyword/9598/kaibab-band-of-paiute-indians
subject: Pueblo of Laguna
valueUri: https://core.tdar.org/browse/culture-keyword/9583/pueblo-of-laguna
subject: Uintah and Ouray Ute Tribe
valueUri: https://core.tdar.org/browse/culture-keyword/9599/uintah-and-ouray-ute-tribe
subject: Pueblo of Nambe
valueUri: https://core.tdar.org/browse/culture-keyword/9584/pueblo-of-nambe
subject: Northwest Band of Shoshone
valueUri: https://core.tdar.org/browse/culture-keyword/9600/northwest-band-of-shoshone
subject: Pueblo of Zuni
valueUri: https://core.tdar.org/browse/culture-keyword/114/pueblo-of-zuni
subject: Hopi
valueUri: https://core.tdar.org/browse/culture-keyword/7591/hopi
subject: Fremont
valueUri: https://core.tdar.org/browse/culture-keyword/24/fremont
subject: Skull Valley Band of Goshute Indians
valueUri: https://core.tdar.org/browse/culture-keyword/9564/skull-valley-band-of-goshute-indians
subject: Pueblo of Zia
valueUri: https://core.tdar.org/browse/culture-keyword/9596/pueblo-of-zia
subject: Consultation
valueUri: https://core.tdar.org/browse/investigation-type/4/consultation
subject: Heritage Management
valueUri: https://core.tdar.org/browse/investigation-type/24/heritage-management

description: Report on archaeological analysis to assess cultural affiliation of ten claimant tribes to the Fremont Culture.
BIP: Boost Invariant Polynomials for Efficient Jet Tagging
Creators: name: Munoz, Jose M
name: Batatia, Ilyes
name: Ortner, Christoph
Publisher: name: arXiv
Year: 2022
Subjects: subject: Computational Physics (physics.comp-ph)
subject: Machine Learning (cs.LG)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: Deep Learning approaches are becoming the go-to methods for data analysis in High Energy Physics (HEP). Nonetheless, most physics-inspired modern architectures are computationally inefficient and lack interpretability. This is especially the case with jet tagging algorithms, where computational efficiency is crucial considering the large amounts of data produced by modern particle detectors. In this work, we present a novel, versatile and transparent framework for jet representation; invariant to Lorentz group boosts, which achieves high accuracy on jet tagging benchmarks while being orders of magnitudes faster to train and evaluate than other modern approaches for both supervised and unsupervised schemes.
Intra-atomic frequency comb based photonic quantum memory using single-atom-cavity setup
Creators: name: Chanchal
name: Teja, G. P.
name: Goyal, Sandeep K.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: On-demand and efficient storage of photons is an essential element in quantum information processing and long-distance quantum communication. Most of the quantum memory protocols require bulk systems in order to store photons. However, with the advent of integrated photonic chip platforms for quantum information processing, on-chip quantum memories are highly sought after. In this paper, we propose a protocol for multi-mode photonic quantum memory using only single-atom-cavity setup. We show that a single atom containing a frequency comb coupled to an optical cavity can store photons efficiently. Further, this scheme can also be used to store polarization states of light. As examples, we show that the Rubidium and Cesium atoms coupled to nanophotonic waveguide cavities can serve as promising candidates to realize our scheme. This provides a possibility of a robust and efficient on-chip quantum memory to be used in integrated photonic chips.
Regulating negative emotions by matched positive emotions
Creators: name: Bornstein, Oren
name: Eyal, Tal
name: Liviatan, Ido
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Social and Behavioral Sciences

description: The aim of the experiment is to examine the effectiveness of a matched (vs. non-matched) positive emotion in regulating negative emotion. The pregerestration is attached.
Quantum Gravity: A Brief History of Ideas and Some Prospects
Creators: name: Carlip, Steven
name: Chiou, Dah-Wei
name: Ni, Wei-Tou
name: Woodard, Richard
Publisher: name: arXiv
Year: 2015
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We present a bird's-eye survey on the development of fundamental ideas of quantum gravity, placing emphasis on perturbative approaches, string theory, loop quantum gravity, and black hole thermodynamics. The early ideas at the dawn of quantum gravity as well as the possible observations of quantum gravitational effects in the foreseeable future are also briefly discussed.
description: Invited review article. A few parts based on arXiv:1410.1486 and arXiv:1412.4362. To appear in Int. J. Mod. Phys. D and in "One Hundred Years of General Relativity: From Genesis and Empirical Foundations to Gravitational Waves, Cosmology and Quantum Gravity," edited by Wei-Tou Ni (World Scientific, Singapore, 2015)
ODECO: Data is key to the success of information economies
Creators: name: van Loenen, Bastiaan
Publisher: name: Zenodo
Year: 2021

description: The value of the European data economy has been assessed to be €739 billion, and highly likely to grow significantly in the coming years. Especially when data is shared openly with the public, more value is expected to be created. However, current developments in the field of open data are characterised as highly fragmented. The TU Delft project ‘Towards a sustainable Open Data ECOsystem’ (ODECO) has been granted as one of the 147 projects funding by the H2020 Marie Skłodowska-Curie action Innovative Training Networks.
Optical modelling of single and multilayer 2D materials and heterostructures
Creators: name: Majérus, Bruno
name: Henrard, Luc
name: Kockaert, Pascal
Publisher: name: arXiv
Year: 2022
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: Bidimensional materials are ideally viewed as having no thickness, as their name suggests. Their optical response have been previously modelled by a purely bidimensional surface current or by a very thin film with some contradictory results. The advent of multilayer stacks of bidimensional materials and combinations of different materials in vertical van der Waals heterostructures highlights however that these materials have a finite thickness. In this article, we propose a new model that reconciles both approaches and we show how volume properties of stacked bidimensional layers can be calculated from the bidimensional response of each individual layer, and conversely. In our approach, each bidimensionnal layers is surrounded by vacuum and described as a kind of transfer matrix with intrinsic parameters that do not depend on the external medium. This provides a link between continuous thin films and discrete layers. We show how to model heterostructures of bidimensional materials and identify the parameters of the current sheet that represents the bidimensional material in the zero-thickness limit, namely the in-plane surface susceptibility and the out-of-plane displacement susceptibility. We show that our unified model is perfectly compatible with existing ellipsometric data with the same reliability as the existing interface model but with different values of the surface susceptibility or bulk dielectric function. We discuss in details the origin of the discrepancies and show that our approach allows to determine intrinsic properties of the bidimensional materials with the advantage that multilayer and monolayer systems are described in a same framework.
description: 12 pages, 9 figures, 16 pages of supplementary information
title: Acute trauma of the knee ligaments: Following the contusion pattern.
Creators: name: Sossa, Didier
Publisher: name: European Congress of Radiology
Year: 2016
Subjects: subject: Trauma
subject: Musculoskeletal system
subject: Musculoskeletal joint
subject: MR
subject: CT
subject: Education
subject: Trauma

description: Learning objectives Background Findings and procedure details Conclusion Personal information References
description: Learning objectives: To review the anatomy of the knee ligaments throughout illustrations and figures. To describe and schematize bone contusion patterns in acute trauma of the knee. To show representative cases and schemes of traumatic knee ligament pathology on...
Global copy number profiling of cancer genomes
Creators: name: Krauthammer, Michael
name: Chen, Mengjie
name: Wang, Xuefeng
name: Yu, Xiaoqing
name: Zhang, Nancy R.
name: Powers, R. Scott
name: Pornputtapong, Natapol
name: Chen, Hao
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2016

description: Summary: In this article, we introduce a robust and efficient strategy for deriving global and allele-specific copy number alternations (CNA) from cancer whole exome sequencing data based on Log R ratios and B-allele frequencies. Applying the approach to the analysis of over 200 skin cancer samples, we demonstrate its utility for discovering distinct CNA events and for deriving ancillary information such as tumor purity.
Watson's theorem and the $NΔ(1232)$ axial transition
Creators: name: Alvarez-Ruso, L.
name: Hernández, E.
name: Nieves, J.
name: Vacas, M. J. Vicente
Publisher: name: arXiv
Year: 2015
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: Nuclear Experiment (nucl-ex)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We present a new determination of the $NΔ$ axial form factors from neutrino induced pion production data. For this purpose, the model of Hernandez {\it et al.} [Phys. Rev. D76, 033005 (2007)] is improved by partially restoring unitarity. This is accomplished by imposing Watson's theorem on the dominant vector and axial multipoles. As a consequence, a larger $C_5^A(0)$, in good agreement with the prediction from the off-diagonal Goldberger-Treiman relation, is now obtained.
description: 17 latex pages, 7 figures, 2 tables. Some typos corrected
The Inflated Chern-Simons Number in Spectator Chromo-Natural Inflation
Creators: name: Bagherian, Hengameh
name: Reece, Matthew
name: Xu, Weishuang Linda
Publisher: name: arXiv
Year: 2022
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The chromo-natural inflation (CNI) scenario predicts a potentially detectable chiral gravitational wave signal, generated by a Chern-Simons coupling between a rolling scalar axion field and an SU(2) gauge field with an isotropy-preserving classical background during inflation. However, the generation of this signal requires a very large integer Chern-Simons level, which can be challenging to explain or embed in a UV-complete model. We show that this challenge persists in the phenomenologically viable spectator field CNI (S-CNI) model. Furthermore, we show that a clockwork scenario giving rise to a large integer as a product of small integers can never produce a Chern-Simons level large enough to have successful S-CNI phenomenology. We briefly discuss other constraints on the model, both in effective field theory based on partial-wave unitarity bounds and in quantum gravity based on the Weak Gravity Conjecture, which may be relevant for further explorations of alternative UV completions.
description: 33 pages, 3 figures
Exponentially slow heating in periodically driven many-body systems
Creators: name: Abanin, Dmitry
name: De Roeck, Wojciech
name: Huveneers, François
Publisher: name: arXiv
Year: 2015
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We derive general bounds on the linear response energy absorption rates of periodically driven many-body systems of spins or fermions on a lattice. We show that for systems with local interactions, energy absorption rate decays exponentially as a function of driving frequency in any number of spatial dimensions. These results imply that topological many-body states in periodically driven systems, although generally metastable, can have very long lifetimes. We discuss applications to other problems, including decay of highly energetic excitations in cold atomic and solid-state systems.
description: v1 to v2: several typos corrected. 5 pages
Topological and nodal superconductor kagome magnesium triboride
Creators: name: An, Yipeng
name: Chen, Juncai
name: Wang, Zhengxuan
name: Li, Jie
name: Gong, Shijing
name: Ma, Chunlan
name: Wang, Tianxing
name: Jiao, Zhaoyong
name: Wu, Ruqian
name: Hu, Jiangping
name: Liu, Wuming
Publisher: name: arXiv
Year: 2022
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: Recently the kagome compounds have inspired enormous interest and made some great progress such as in the field of superconductivity and topology. Here we predict a different kagome magnesium triboride (MgB3) superconductor with a calculated Tc ~12.2 K and Tc ~15.4 K by external stress, the potentially highest among the reported diverse kagome-type superconductors. We reveal its various exotic physical properties including the van Hove singularity, flat-band, multiple Dirac points, and nontrivial topology. The system can be described by a two-band model with highly anisotropic superconducting gaps on Fermi surfaces. Its topological and nodal superconducting nature is unveiled by a recently developed symmetry indicators method. Our results suggest that MgB3 can be a new platform to study exotic physics in the kagome structure, and pave a way to seek for more superconductors and topological materials with XY3-type kagome lattice.
description: 6 pages, 4 figures
Judgements of Health and Social Identities
Creators: name: Volpe, Vanessa
name: Hoggard, Lori
name: Skinner, Olivenne
name: Holochwost, Steven
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Medicine and Health Sciences
subject: Social and Behavioral Sciences

description: Based on feedback from reviewers and as a result of not being able to establish accurate participant racial/ethnic identifications of Black male target photos for the sample, we have substantially shifted our analytic plan to only substantively examine skin tone, rater race, and their interaction, as predictors of mental and physical health of Black female photos.
Beyond Model Interpretability: Socio-Structural Explanations in Machine Learning
Creators: name: Smart, Andrew
name: Kasirzadeh, Atoosa
Publisher: name: arXiv
Year: 2024
Subjects: subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: What is it to interpret the outputs of an opaque machine learning model. One approach is to develop interpretable machine learning techniques. These techniques aim to show how machine learning models function by providing either model centric local or global explanations, which can be based on mechanistic interpretations revealing the inner working mechanisms of models or nonmechanistic approximations showing input feature output data relationships. In this paper, we draw on social philosophy to argue that interpreting machine learning outputs in certain normatively salient domains could require appealing to a third type of explanation that we call sociostructural explanation. The relevance of this explanation type is motivated by the fact that machine learning models are not isolated entities but are embedded within and shaped by social structures. Sociostructural explanations aim to illustrate how social structures contribute to and partially explain the outputs of machine learning models. We demonstrate the importance of sociostructural explanations by examining a racially biased healthcare allocation algorithm. Our proposal highlights the need for transparency beyond model interpretability, understanding the outputs of machine learning systems could require a broader analysis that extends beyond the understanding of the machine learning model itself.
$X$ and $Z_{cs}$ in $B^+\to J/ψϕK^+$ as $s$-wave threshold cusps and alternative spin-parity assignments to $X(4274)$ and $X(4500)$
Creators: name: Luo, Xuan
name: Nakamura, Satoshi X.
Publisher: name: arXiv
Year: 2022
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Recent LHCb's amplitude analysis on $B^+\to J/ψϕK^+$ suggests the existence of exotic $X$ and $Z_{cs}$ hadrons, based on an assumption that Breit-Wigner resonances describe all the peak structures. However, all the peaks and also dips in the spectra are located at relevant meson-meson thresholds where threshold kinematical cusps might cause such structures. This points to the importance of an independent amplitude analysis with due consideration of the kinematical effects, and this is what we do in this work. Our model fits well $J/ψϕ$, $J/ψK^+$, and $K^+ϕ$ invariant mass distributions simultaneously, demonstrating that all the $X$, $Z_{cs}$, and dip structures can be well described with the ordinary $s$-wave threshold cusps. Spin-parity of the $X(4274)$ and $X(4500)$ structures are respectively $0^-$ and $1^-$ from our model, as opposed to $1^+$ and $0^+$ from the LHCb's. With all relevant threshold cusps considered, the number of fitting parameters seems to be significantly reduced. The LHCb data requires $D_s^{(*)}\bar{D}^{*}$ scattering lengths in our model to be consistent with zero, disfavoring $D_s^{(*)}\bar{D}^{*}$ molecule interpretations of $Z_{cs}(4000)$ and $Z_{cs}(4220)$ and, via the SU(3) relation, being consistent with previous lattice QCD results.
description: 10 pages, 6 figures, 1 table; v3: minor corrections, matches published version
MSAcquisitionSimulator: data-dependent acquisition simulator for LC-MS shotgun proteomics
Creators: name: Wang, Wei
name: Major, Michael B.
name: Goldfarb, Dennis
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2016

description: Summary: Data-dependent acquisition (DDA) is the most common method used to control the acquisition process of shotgun proteomics experiments. While novel DDA approaches have been proposed, their evaluation is made difficult by the need of programmatic control of a mass spectrometer. An alternative is in silico analysis, for which suitable software has been unavailable. To meet this need, we have developed MSAcquisitionSimulator—a collection of C ++ programs for simulating ground truth LC-MS data and the subsequent application of custom DDA algorithms. It provides an opportunity for researchers to test, refine and evaluate novel DDA algorithms prior to implementation on a mass spectrometer.
PATIENT AND CAREGIVER EXPERIENCES LIVING WITH ADVANCED KIDNEY DISEASE
Publisher: name: University of Virginia
Year: 2023
Subjects: Advanced chronic kidney disease (ACKD), palliative care (PC)

description: Background: Advanced chronic kidney disease (ACKD), affects hundreds of thousands of people and their caregivers degrading patient and caregiver quality of life (QOL). Integration of palliative care (PC) into care for people living with ACKD has been suggested as a means to improve the quality of life for patients and their non professional caregivers. However, relatively little research has examined ACKD patient/caregiver perceptions regarding the role of PC. The specific aims of this study are: (1) Describe patients’ and caregivers’ experiences with and perceptions of living with ACKD, including symptoms/symptom management, decision-making around disease management choices, and other perceived gaps/challenges in care; and (2) explore ACKD patients’ and caregivers’ understanding of palliative care and their perspectives regarding what role, if any, palliative care should play in managing ACKD. Methods: This qualitative descriptive study identified concerns of patients with ACKD,
and their caregivers related to their health and healthcare. Twenty-four interviews were
conducted (twenty-two with patients) with participants purposively sampled from dialysis clinics at the University of Virginia. Data were simultaneously collected and analyzed to create codes and eventually categories and themes. Memo-writing was used to document key decision points. Findings: This qualitative descriptive study identified four themes: (1) ACKD impacts patients physically, emotionally, socially, and economically; (2) Patients use a range of self-management strategies learned through trial and error from other patients and clinicians; (3) Decision-making is complex, often not explicit/elucidated, and ongoing throughout kidney replacement therapy (RRT); and (4) Lack of familiarity with PC, perceived as unnecessary during illness stability, but potentially useful during exacerbations/periods of decline. Patients do not see need for palliative care services now, but some would see utility if they experienced increased complexity/instability in their clinical condition. In general, patients preferred to access services via their usual team of clinicians. Conclusion: The findings highlighted the challenges ACKD patients face in living with their disease and the strategies they employ to care for themselves. Patients were not familiar with PC. However, they could envision a role for increased access to PC, particularly if delivered by their nephrology team within their usual care settings.
title: Elastofibroma Dorsi: diagnosis and follow-up
Creators: name: Bartocci, Margherita
Publisher: name: European Congress of Radiology
Year: 2016
Subjects: subject: Neoplasia
subject: Diagnostic procedure
subject: Ultrasound
subject: MR
subject: CT
subject: Musculoskeletal soft tissue

description: Aims and objectives Methods and materials Results Conclusion Personal information References
description: Aims and objectives: Elastofibroma dorsi (ED) is a rare benign tumor of fibroelastic tissue of the thoracic wall, which lacks of malignant potential. The lesion usually arises beneath the rhomboid major and latissimus dorsi muscles, subjacent to the inferior angle of...
Victor Conzemius/Martin Greschat/Hermann Kocher (Hrsg.), Die Zeit nach1945 als Thema kirchlicher Zeitgeschichte
Publisher: name: Herder Korrespondenz
Year: 1970

description: Herder Korrespondenz, Bd. 42 Nr. 10 (1988): Herder Korrespondenz, Band 42, Heft 10
Zoom Fatigue Study 3 (Vignette) - Amendment
Creators: name: Leckfor, Christina
name: Slatcher, Richard
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Social Psychology
subject: Social and Behavioral Sciences
subject: Psychology
subject: FOS: Psychology

description: This is an amendment to the Zoom Fatigue Study 3 (Vignette) preregistration.
Quantifying nonstabilizerness of matrix product states
Creators: name: Haug, Tobias
name: Piroli, Lorenzo
Publisher: name: arXiv
Year: 2022
Subjects: subject: Quantum Physics (quant-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Nonstabilizerness, also known as magic, quantifies the number of non-Clifford operations needed in order to prepare a quantum state. As typical measures either involve minimization procedures or a computational cost exponential in the number of qubits $N$, it is notoriously hard to characterize for many-body states. In this work, we show that nonstabilizerness, as quantified by the recently introduced Stabilizer Rényi Entropies (SREs), can be computed efficiently for matrix product states (MPSs). Specifically, given an MPS of bond dimension $χ$ and integer Rényi index $n>1$, we show that the SRE can be expressed in terms of the norm of an MPS with bond dimension $χ^{2n}$. For translation-invariant states, this allows us to extract it from a single tensor, the transfer matrix, while for generic MPSs this construction yields a computational cost linear in $N$ and polynomial in $χ$. We exploit this observation to revisit the study of ground-state nonstabilizerness in the quantum Ising chain, providing accurate numerical results up to large system sizes. We analyze the SRE near criticality and investigate its dependence on the local computational basis, showing that it is in general not maximal at the critical point.
description: 11 pages, 7 figures
All Things Considered: The Job Choice Decisions of Passive Job Seekers - Amendment 2
Creators: name: Mansfield, Claire
name: Banks, George
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Business
subject: Human Resources Management
subject: Social and Behavioral Sciences

description: An amendment with an updated analysis plan for H2, H4, and H6 in our investigation of the job choice decisions of passive job seekers
Classification of RNA structure change by “gazing” at experimental data
Creators: name: Woods, Chanin Tolson
name: Laederach, Alain
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2017

description: Motivation: Mutations (or Single Nucleotide Variants) in folded RiboNucleic Acid structures that cause local or global conformational change are riboSNitches. Predicting riboSNitches is challenging, as it requires making two, albeit related, structure predictions. The data most often used to experimentally validate riboSNitch predictions is Selective 2′ Hydroxyl Acylation by Primer Extension, or SHAPE. Experimentally establishing a riboSNitch requires the quantitative comparison of two SHAPE traces: wild-type (WT) and mutant. Historically, SHAPE data was collected on electropherograms and change in structure was evaluated by ‘gel gazing.’ SHAPE data is now routinely collected with next generation sequencing and/or capillary sequencers. We aim to establish a classifier capable of simulating human ‘gazing’ by identifying features of the SHAPE profile that human experts agree ‘looks’ like a riboSNitch.
Runge-Kutta time semidiscretizations of semilinear PDEs with non-smooth data
Creators: name: Wulff, Claudia
name: Evans, Chris
Publisher: name: arXiv
Year: 2015
Subjects: subject: Numerical Analysis (math.NA)
subject: FOS: Mathematics
subject: 65J08, 65J15, 65M12, 65M15

description: We study semilinear evolution equations $ \frac {{\rm d} U}{{\rm d} t}=AU+B(U)$ posed on a Hilbert space ${\cal Y}$, where $A$ is normal and generates a strongly continuous semigroup, $B$ is a smooth nonlinearity from ${\cal Y}_\ell = D(A^\ell)$ to itself, and $\ell \in I \subseteq [0,L]$, $L \geq 0$, $0,L \in I$. In particular the one-dimensional semilinear wave equation and nonlinear Schr$ö$dinger equation with periodic, Neumann and Dirichlet boundary conditions fit into this framework. We discretize the evolution equation with an A-stable Runge-Kutta method in time, retaining continuous space, and prove convergence of order $O(h^{p\ell/(p+1)})$ for non-smooth initial data $U^0\in {\cal Y}_\ell$, where $\ell\leq p+1$, for a method of classical order $p$, extending a result by Brenner and Thom$é$e for linear systems. Our approach is to project the semiflow and numerical method to spectral Galerkin approximations, and to balance the projection error with the error of the time discretization of the projected system. Numerical experiments suggest that our estimates are sharp.
description: 1 figure
A systematic mapping review of the interventions used to develop cooperative, collaborative or collective skills.
Creators: name: O'Brien-Smith, Jade
name: Fransen, Job
name: Bennett, Kyle
name: Inns, Joshua
name: Richardson, Mike
name: Passos, Pedro
name: Smith, Mitchell
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Kinesiology
subject: Exercise Science
subject: Sports Studies
subject: Psychology of Movement
subject: Life Sciences
subject: Motor Control
subject: Social and Behavioral Sciences

description: The main outcome of this mapping review is to provide an overview of the available literature on collective skill acquisition by systematically reviewing the methods used in scientific studies across a variety of human motor domains (sport, exercise, motor control, motor learning, motor performance, interpersonal coordination, motor coordination) to develop skills at a collective (or team) level.
Near-to-far field transformations for radiative and guided waves
Creators: name: Yang, Jianji
name: Hugonin, Jean-Paul
name: Lalanne, Philippe
Publisher: name: arXiv
Year: 2015
Subjects: subject: Optics (physics.optics)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: Light emitters or scatterers embedded in stratified media may couple energy to both free space modes and guided modes of the stratified structure. For a comprehensive analysis, it is important to evaluate the angular intensity distribution of both the free-space modes and guided modes excited in such systems. In the present work, we propose an original method based on Lorentz-reciprocity theorem to efficiently calculate the free-space and guided radiation diagrams with a high accuracy from the sole knowledge of the near-field around the emitters or scatterers. Compared to conventional near-to-far field transformation techniques, the proposal allows one to easily evaluate the guided-mode radiation diagrams, even if material dissipation is present in the stack, and thus to simultaneously track the coupling of light to all channels (i.e., free-space and guided-ones). We also provide an open-source code that may be used with essentially any Maxwell's equation solver. The numerical tool may help to engineer various devices, such as light-emitting diodes or nanoantennas to achieve directional and efficient radiative spontaneous decays in free space and guided optics.
description: an associated open-source code will be available on line after the publication in an archive journal
Managing Disclosure-Outcomes in Intelligence Interviews: A Pilot Test
Creators: name: Neequaye, David
name: Luke, Timothy
name: Kollback, Kristina
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Social and Behavioral Sciences
subject: disclosure
subject: information management
subject: intelligence interviewing
subject: self-interest

description: This documentation is to preregister a pilot test preceding a sequence of studies to examine the disclosure-outcomes management model (Neequaye & Luke, 2020). The model theorizes about the mechanisms underlying the disclosure of information in intelligence interviews. Such interviews are social interactions in which (law enforcement) interviewers seek information from people (i.e., interviewees)—for security reasons or legal purposes. The theory under examination posits that interviewees estimate what information will yield desirable, as opposed to undesirable, outcomes and disclose those information items accordingly.
title: MR imaging of neonatal brain infections: Germ and specific signs
Creators: name: Cherif, Akram
Publisher: name: European Congress of Radiology
Year: 2016
Subjects: subject: Infection
subject: Acute
subject: Surgery
subject: MR-Diffusion/Perfusion
subject: MR
subject: Neuroradiology brain

description: Learning objectives Background Findings and procedure details Conclusion Personal information References
description: Learning objectives: To discuss imaging features of neonatal brain infections depending in the infective agent To review the imaging features of complicated meningitis in infants and...