cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Revised fission yeast gene and allele nomenclature guidelines for machine readability.
Creators: name: Lera-Ramírez, Manuel
name: Bähler, Jürg
name: Mata, Juan
name: Rutherford, Kim
name: Hoffman, Charles S
name: Lambert, Sarah
name: Oliferenko, Snezhana
name: Martin, Sophie G
name: Gould, Kathleen L
name: Du, Li-Lin
name: Sabatinos, Sarah A
name: Forsburg, Susan L
name: Nielsen, Olaf
name: Nurse, Paul
name: Wood, Valerie
Publisher: name: The Francis Crick Institute
Year: 2023
Subjects: classificationCode: Chemical Biology & High Throughput
subject: Chemical Biology & High Throughput
classificationCode: Ecology,Evolution & Ethology
subject: Ecology,Evolution & Ethology
classificationCode: Genetics & Genomics
subject: Genetics & Genomics
classificationCode: Computational & Systems Biology
subject: Computational & Systems Biology
classificationCode: Model organisms
subject: Model organisms
classificationCode: Biochemistry & Proteomics
subject: Biochemistry & Proteomics
classificationCode: Synthetic Biology
subject: Synthetic Biology
classificationCode: Cell Biology
subject: Cell Biology
classificationCode: Cell Cycle & Chromosomes
subject: Cell Cycle & Chromosomes

description: Standardized nomenclature for genes, gene products, and isoforms is crucial to prevent ambiguity and enable clear communication of scientific data, facilitating efficient biocuration and data sharing. Standardized genotype nomenclature, which describes alleles present in a specific strain that differ from those in the wild-type reference strain, is equally essential to maximize research impact and ensure that results linking genotypes to phenotypes are Findable, Accessible, Interoperable, and Reusable (FAIR). In this publication, we extend the fission yeast clade gene nomenclature guidelines to support the curation efforts at PomBase (www.pombase.org), the Schizosaccharomyces pombe Model Organism Database. This update introduces nomenclature guidelines for noncoding RNA genes, following those set forth by the Human Genome Organisation Gene Nomenclature Committee. Additionally, we provide a significant update to the allele and genotype nomenclature guidelines originally published in 1987, to standardize the diverse range of genetic modifications enabled by the fission yeast genetic toolbox. These updated guidelines reflect a community consensus between numerous fission yeast researchers. Adoption of these rules will improve consistency in gene and genotype nomenclature, and facilitate machine-readability and automated entity recognition of fission yeast genes and alleles in publications or datasets. In conclusion, our updated guidelines provide a valuable resource for the fission yeast research community, promoting consistency, clarity, and FAIRness in genetic data sharing and interpretation.
A near infrared test for two recent luminosity functions for galaxies
Creators: name: Zaninetti, L.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Two recent luminosity function (LF) for galaxies are reviewed and the parameters which characterize the near infrared are fixed. A first LF is a modified Schechter LF with four parameters. The second LF is derived from the generalized gamma and has four parameters. The formulas which give the number of galaxies as function of the redshift are reviewed and a special attention is given to the position of the photometric maximum which is expressed as function of a critical parameter or the flux of radiation or the apparent magnitude. A simulation of the 2MASS Redshift Survey is given in the framework of the non Poissonian Voronoi Tessellation.
description: 9 figures and 11 pages
Study of Two Successive Three-Ribbon Solar Flares on 2012 July 6
Creators: name: Wang, Haimin
name: Liu, Chang
name: Deng, Na
name: Zeng, Zhicheng
name: Xu, Yan
name: Jing, Ju
name: Cao, Wenda
Publisher: name: arXiv
Year: 2013
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: This Letter reports two rarely observed three-ribbon flares (M1.9 and C9.2) on 2012 July 6 in NOAA AR 11515, which we found with Halpha observations of 0.1" resolution from the New Solar Telescope and CaII H images from Hinode. The flaring site is characterized with an intriguing "fish-bone-like" morphology evidenced by both Halpha images and a nonlinear force-free field (NLFFF) extrapolation, where two semi-parallel rows of low-lying, sheared loops connect an elongated, parasitic negative field with the sandwiching positive fields. The NLFFF model also shows that the two rows of loops are asymmetric in height and have opposite twists, and are enveloped by large-scale field lines including open fields. The two flares occurred in succession in half an hour and are located at the two ends of the flaring region. The three ribbons of each flare run parallel to the PIL, with the outer two lying in the positive field and the central one in the negative field. Both flares show surge-like flows in Halpha apparently toward the remote region, while the C9.2 flare is also accompanied by EUV jets possibly along the open field lines. Interestingly, the 12-25 keV hard X-ray sources of the C9.2 flare first line up with the central ribbon then shift to concentrate on the top of the higher branch of loops. These results are discussed in favor of reconnection along the coronal null-line producing the three flare ribbons and the associated ejections.
Additional file 1 of Synthesis and antioxidant properties of 2-(3-(hydroxyimino)methyl)-1H-indol-1-yl)acetamide derivatives
Creators: name: Chandravadivelu Gopi
name: Magharla Dasaratha Dhanaraju
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Neuroscience
subject: Pharmacology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Plant Biology
subject: FOS: Biological sciences

description: Additional file 1:. Supplementary files
Speckle Imaging with VLT/NACO No-AO Mode
Creators: name: Rengaswamy, Sridharan
name: Girard, Julien
name: de Wit, Willem-Jan
name: Boffin, Henri
Publisher: name: arXiv
Year: 2014
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: Long-exposure stellar images recorded with large ground-based telescopes are blurred due to the turbulent nature of the atmosphere. The VLT employs active and adaptive optics (AO) systems to compensate for the deleterious effects of the atmosphere in real time. The speckle imaging technique provides an alternative way to achieve diffraction-limited imaging by post-processing a series of short-exposure images. The use of speckle imaging with the no-AO mode of NACO at the VLT is demonstrated. Application of this technique is particularly suited to the J-band and it provides versatile high angular resolution imaging under mediocre conditions and/or in imaging extended objects. The implementation of this mode underlines the continuing attractiveness of NACO at the VLT.
description: 5 pages, 6 figures
Uncovering a population of gravitational lens galaxies with magnified standard candle SN Zwicky
Creators: name: Goobar, Ariel
name: Johansson, Joel
name: Schulze, Steve
name: Arendse, Nikki
name: Carracedo, Ana Sagués
name: Dhawan, Suhail
name: Mörtsell, Edvard
name: Fremling, Christoffer
name: Yan, Lin
name: Perley, Daniel
name: Sollerman, Jesper
name: Joseph, Rémy
name: Hinds, K-Ryan
name: Meynardie, William
name: Andreoni, Igor
name: Bellm, Eric
name: Bloom, Josh
name: Collett, Thomas E.
name: Drake, Andrew
name: Graham, Matthew
name: Kasliwal, Mansi
name: Kulkarni, Shri
name: Lemon, Cameron
name: Miller, Adam A.
name: Neill, James D.
name: Nordin, Jakob
name: Pierel, Justin
name: Richard, Johan
name: Riddle, Reed
name: Rigault, Mickael
name: Rusholme, Ben
name: Sharma, Yashvi
name: Stein, Robert
name: Stewart, Gabrielle
name: Townsend, Alice
name: Vinko, Jozsef
name: Wheeler, J. Craig
name: Wold, Avery
Publisher: name: arXiv
Year: 2022
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: Detecting gravitationally lensed supernovae is among the biggest challenges in astronomy. It involves a combination of two very rare phenomena: catching the transient signal of a stellar explosion in a distant galaxy and observing it through a nearly perfectly aligned foreground galaxy that deflects light towards the observer. High-cadence optical observations with the Zwicky Transient Facility, with an unparalleled large field of view, led to the detection of a multiply-imaged Type Ia supernova (SN Ia), ``SN Zwicky", a.k.a. SN 2022qmx. Magnified nearly twenty-five times, the system was found thanks to the ``standard candle" nature of SNe Ia. High-spatial resolution imaging with the Keck telescope resolved four images of the supernova with very small angular separation, corresponding to an Einstein radius of only $θ_E =0.167"$ and almost identical arrival times. The small $θ_E$ and faintness of the lensing galaxy is very unusual, highlighting the importance of supernovae to fully characterise the properties of galaxy-scale gravitational lenses, including the impact of galaxy substructures.
description: Matches published version in Nature Astronomy
Sharing Circles as a way to facilitate capacity sharing across generations and cultures
Creators: name: Grosfeld, Lisa
Publisher: name: Zenodo
Year: 2023
Subjects: Arctic PASSION
Capacity Sharing
APECS
Arctic
International cooperation
Intercultural exchange
Transdisciplinary exchange
Dialogue

description: This presentation was part of the session "Improving intercultural and transdisciplinary collaborations in Arctic research by better understanding the value of capacity sharing - Special ECR and Arctic youth version" at the Arctic Science Summit Week 2023. In this presentation we present an approach towards starting intercultural and transdisciplinary dialogue in the frame of the EU project Arctic PASSION. The format of a Sharing Circle for early career scientists and Arctic youth will be presented and discussed. This activity was driven by the project’s principle surrounding intercultural capacity sharing. The concept of the Sharing Circle has been co-created from the beginning with early career scientists and the Indigenous community where the event will take place. Discussions held in indoor and outdoor settings will help facilitate transdisciplinary dialogue and two-way, cross-cultural knowledge sharing. It is hoped that the next generation of Arctic scientists will gain an understanding of the importance and complexity of relationship building and early dialogue early in research processes. Thus, leading to more inclusive, cross-sectoral and cross-cultural research in the future. Lessons learned from this Sharing Circle will help guide Arctic PASSIONs progress forward and will hopefully impact future research collaborations beyond the group of participants, as these will spread the messages in their home countries afterwards.
description: See more information here: https://arcticpassion.eu/sharingcircle/
Additional file 1 of The effect of adding goal-directed hemodynamic management for elective patients in an established enhanced recovery program for colorectal surgery: results of quasi-experimental pragmatic trial
Creators: name: McEvoy, Matthew D.
name: Wanderer, Jonathan P.
name: Yaping Shi
name: Ramanujan, Krishnan S.
name: Geiger, Timothy M.
name: Shotwell, Matthew S.
name: Shaw, Andrew D.
name: Hawkins, Alexander T.
name: Martin, Barbara J.
name: Mythen, Michael G.
name: Sandberg, Warren S.
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1: Table S1. Postoperative American College of Surgeons National Surgical Quality Improvement Program Outcomes. This table lists the postoperative outcomes from the American College of Surgeons National Surgical Quality Improvement Program (ACS NSQIP). Table S2. Time in target analysis. This table shows the complete results of time in target analysis.
Supplementary analyses from The Restrain Food Database: validation of an open-source database of foods that should be eaten more or less as part of a healthy diet
Creators: name: Randle, Mark
name: Duarte, Ines
name: Maizey, Leah
name: Tzavella, Loukia
name: Adams, Rachel C.
name: Chambers, Christopher D.
Publisher: name: The Royal Society
Year: 2022
Subjects: subject: 179999 Psychology and Cognitive Sciences not elsewhere classified
subject: FOS: Psychology

description: Results of sensitivity analyses for pre-registered analyses
Additional file 1 of Experiences of managing a gluten-free diet on multiple levels of society: a qualitative study
Creators: name: Garnweidner-Holme, Lisa
name: Sende, Karla
name: Hellmann, Monica
name: Henriksen, Christine
name: Lundin, Knut E. A.
name: Myhrstad, Mari C. W.
name: Telle-Hansen, Vibeke H.
Publisher: name: figshare
Year: 2020
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Science Policy

description: Additional file 1.
Communication with national and regional policymakers in the Arctic: Experience for future two way sharing processes in science communication
Creators: name: Tkach, Pavel
Publisher: name: Zenodo
Year: 2023
Subjects: Communication
Policymaking
Science
Arctic PASSION

description: This presentation was part of the session "Improving intercultural and transdisciplinary collaborations in Arctic research by better understanding the value of capacity sharing - Special ECR and Arctic youth version" at the Arctic Science Summit Week 2023. The presentation topic was “Communication with national and regional policymakers in the Arctic: Experience for future two-way sharing processes in science communication”. In the presentation, we analysed responses to the interview questions “How can scientists help policymakers? What can they do in order to make policymaking at the subnational level more efficient?” and came to very important conclusions:
 1. Do not underestimate the local level of governance! Before going to international and global agendas, carefully consider what is happening and what knowledge gaps are in your place and your community.
 2. Do not hesitate to contact policymakers! Regardless of their status, they are always interested in seeing scientific results, scientific knowledge that can be useful in the future, or at least participating in co-production! Public servants are not scary!
 3. Explain science! Make science concrete and understandable for all. The community is not only natural scientists or academics. Policymakers want practical reports with socio-economic effects and conclusions, not just digits.
Supplementary analyses from The restrain food database: validation of an open-source database of foods that should be eaten more or less as part of a healthy diet
Creators: name: Randle, Mark
name: Duarte, Ines
name: Maizey, Leah
name: Tzavella, Loukia
name: Adams, Rachel C.
name: Chambers, Christopher D.
Publisher: name: The Royal Society
Year: 2022
Subjects: subject: 179999 Psychology and Cognitive Sciences not elsewhere classified
subject: FOS: Psychology

description: Results of sensitivity analyses for pre-registered analyses
Renormalization of Loop Functions in QCD
Creators: name: Berwein, Matthias
name: Brambilla, Nora
name: Vairo, Antonio
Publisher: name: arXiv
Year: 2013
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: High Energy Physics - Lattice (hep-lat)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We give a short overview of the renormalization properties of rectangular Wilson loops, the Polyakov loop correlator and the cyclic Wilson loop. We then discuss how to renormalize loops with more than one intersection, using the simplest non-trivial case as an illustrative example. Our findings expand on previous treatments. The generalized exponentiation theorem is applied to the Polyakov loop correlator and used to renormalize linear divergences in the cyclic Wilson loop.
description: 15 pages, 3 figures, invited contribution to the special issue "Path Dependence in Quantum Physics" of Particles and Nuclei
Bowel function and quality of life following surgery for deep endometriosis
Creators: name: Scheepers, Wessel F. W.
name: Maas, Jacques W. M.
name: van de Kar, Majorie M. A.
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Medicine
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Mental Health

description: To assess the influence of surgical approach, complications and patient characteristics and their postoperative functional outcomes on (sexual) quality of life (QoL) in patients with deep endometriosis (DE) with bowel involvement. Retrospective cohort study on patients surgically treated for DE in a Dutch tertiary referral hospital. Data are based on surgical records and questionnaires covering current postoperative bowel function and (sexual) QoL. Postoperative functional score outcomes: constipation, fecal incontinence and Low Anterior Resection Syndrome (LARS) did not differ between patients treated with rectal shaving or segmental resection. Thirty percent of women treated with rectal shaving experienced LARS-like symptoms as well. Women who underwent segmental resection had a worse sexual QoL compared to patients managed by shaving. Patients who suffered from complications had a worse postoperative QoL. A higher postoperative constipation score was correlated with a significantly higher pain score and a lower overall and sexual QoL. LARS-score was correlated with a worsened sexual QoL. Women who underwent surgery for deep endometriosis rated their overall QoL as lower when a complication occurred. Segmental resection resulted in a lower sexual QoL compared to shaving. We showed that a higher LARS-score correlates with a lower sexual QOL, and postoperative constipation with more pain and a lower overall and sexual QoL. Interestingly, after using the shaving technique one-third of the patients experienced LARS-like symptoms as well.
Time-reversal symmetry breaking superconductivity in the coexistence phase with magnetism in Fe-pnictides
Creators: name: Hinojosa, Alberto
name: Fernandes, Rafael M.
name: Chubukov, Andrey V.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We argue that superconductivity in the coexistence region with spin-density-wave (SDW) order in weakly doped Fe-pnictides differs qualitatively from the ordinary $s^{+-}$ state outside the coexistence region, as it develops an additional gap component which is a mixture of intra-pocket singlet ($s^{++}$) and inter-pocket spin-triplet pairings (the $t-$state). The coupling constant for the $t-$channel is proportional to the SDW order and involves interactions that do not contribute to superconductivity outside of the SDW region. We argue that the $s^{+-}$ and $t-$type superconducting orders coexist at low temperatures, and the relative phase between the two is in general different than $0$ or $π$, manifesting explicitly the breaking of the time-reversal symmetry promoted by long-range SDW order. We show that this exotic state emerges already in the simplest model of Fe-pnictides, with one hole pocketand two symmetry-related electron pockets. We argue that in some parameter range time-reversal gets broken even before long-range superconducting order develops.
description: 9 pages, 3 figures
Managing endometriosis: a cross-sectional survey of women in Australia
Creators: name: O’Hara, Rebecca
name: Rowe, Heather
name: Fisher, Jane
Publisher: name: Taylor & Francis
Year: 2020
Subjects: Medicine
Cell Biology
Biotechnology
Cancer
Science Policy

description: Endometriosis is a chronic, inflammatory condition. The aim was to describe the self-reported disease characteristics and factors associated with the use of different treatment modalities among women with surgically diagnosed endometriosis. A cross-sectional online survey featuring 58 fixed-response items measuring disease characteristics, self-efficacy, health service usage, and treatment approaches was conducted. Logistic regression was used to explore the factors associated with different treatment modalities. Complete data were available from 620 respondents. Average delay to diagnosis was 6.4 years. Despite medical and surgical intervention, 65.8% reported dysmenorrhea and 61.1% reported dyspareunia, and 82.7% reported chronic pelvic pain in the last 3 months. Respondents had consulted an average of three different health practitioner specialties in the previous 12 months for their endometriosis. A chronic disease management plan (CDMP) may be a useful mechanism to coordinate multidisciplinary care among women who experience ongoing symptoms.
Multiplicity distributions in the forward rapidity region in proton-proton collisions at the Large Hadron Collider
Creators: name: Ghosh, Premomoy
name: Muhuri, Sanjib
Publisher: name: arXiv
Year: 2014
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Measured multiplicity distributions of primary charged particles produced in the forward rapidity region of the $proton-proton$ ($pp$) collisions at the centre-of-mass energy, $\sqrt {s}$ = 7 TeV at the Large Hadron Collider (LHC) have been analyzed in terms of the Negative Binomial Distribution (NBD) function. Like the multiplicity distributions in the mid-rapidity region for the $pp$ collisions at $\sqrt {s}$ = 7 TeV, the distributions for the minimum bias events in the forward region also are better described with the superposition of two-NBDs, as proposed by a two-component model of particle production from two processes, the "$soft$" and the "$hard$". However, the multiplicity distribution for the "hard-QCD" events in a large pseudorapidity window does not oblige the two-component model.
description: 6 pages 3 figures
Universal location of Yang-Lee edge singularity in classic O(N) universality classes
Creators: name: Johnson, Gregory
name: Rennecke, Fabian
name: Skokov, Vladimir V.
Publisher: name: arXiv
Year: 2022
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Employing the functional renormalization group approach at next-to-leading order of the derivative expansion, we refine our earlier findings for the location of the Yang-Lee edge singularity in classic O(N) universality classes. For the universality classes of interest to QCD, in three dimensions, we found $|z_c|/R_χ^{1/γ} = 1.612(9),\ 1.597(3)$ for $N=2$, $4$ correspondingly. We also established $|z_c| = 2.04(8),\ 1.69(3)$ for $N=2$, $4$ albeit with greater systematic error.
description: 36 pages; 6 figures; version accepted for publication
Theory and applications of the relativistic Boltzmann equation
Creators: name: Kremer, Gilberto M.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: In this work two systems are analyzed within the framework of the relativistic Boltzmann equation. One of them refers to a description of binary mixtures of electrons and protons and of electrons and photons subjected to external electromagnetic fields in special relativity. In this case the Fourier and Ohm laws are derived and the corresponding transport coefficients are obtained. In the other a relativistic gas under the influence of the Schwarzschild metric is studied. It is shown that the heat flux in Fourier's law in the presence of gravitational fields has three contributions, the usual dependence on the temperature gradient, and two relativistic contributions, one of them associated with an acceleration and another to a gravitational potential gradient. Furthermore it is shown that the transport coefficient of thermal conductivity decreases in the presence of a gravitational field. The dependence of the temperature field in the presence of a gravitational potential is also discussed.
description: 12 pages. arXiv admin note: text overlap with arXiv:1207.3978
Additional file 1 of Drug-related relapses in drug reaction with eosinophilia and systemic symptoms (DRESS)
Creators: name: Jörg, Lukas
name: Helbling, Arthur
name: Yerly, Daniel
name: Pichler, Werner J.
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: Additional file 1. Additional Tables.
USING DIFFERENT METHODS IN ORGANIZING MUSIC LESSONS.
Creators: name: Gaziev, Jobirkhon
Publisher: name: Zenodo
Year: 2023

description: This article is about reforms in the field of culture and art in our country, the role of music in the life of society, the role of music in the formation of the spiritual, artistic and moral culture of the young generation, the methods of organizing music lessons by teachers of music culture. detailed information is provided.
Additional file 1 of Diesel exhaust impairs TREM2 to dysregulate neuroinflammation
Creators: name: Greve, Hendrik J.
name: Mumaw, Christen L.
name: Messenger, Evan J.
name: Prasada R. S. Kodavanti
name: Royland, Joyce L.
name: Kodavanti, Urmila P.
name: Block, Michelle L.
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Table S1. Rat Primer Sequences for qPCR. Tumor Necrosis Factor α, TNFα; lipoprotein lipase, LPL; triggering receptor expressed on myeloid cells 2, TREM2; lysozyme, Lyz2; ionized calcium binding adaptor molecule 1, IBA-1; C-X3-C motif chemokine receptor 1, CX3CR1; glyceraldehyde 3-phosphate dehydrogenase, GAPDH; vascular cell adhesion molecule 1, VCAM-1; intracellular adhesion molecule 1, ICAM-1; aquaporin 4, Aqp4; multidrug resistance protein 1b, Mdr1b.
Additional file 2 of Diesel exhaust impairs TREM2 to dysregulate neuroinflammation
Creators: name: Greve, Hendrik J.
name: Mumaw, Christen L.
name: Messenger, Evan J.
name: Prasada R. S. Kodavanti
name: Royland, Joyce L.
name: Kodavanti, Urmila P.
name: Block, Michelle L.
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 2: Table S2. Mouse Primer Sequences for qPCR. Tumor Necrosis Factor α, TNFα; interleukin 1 β, IL-1β; neutrophil cytosolic factor 1, Ncf1; neutrophil cytosolic factor 2, Ncf2; cytochrome b-245, beta polypeptide, Cybb; glyceraldehyde 3-phosphate dehydrogenase, GAPDH; triggering receptor expressed on myeloid cells 2, Trem2.
Geometry And Quantum Noise
Creators: name: Barbon, Jose L. F.
name: Rabinovici, Eliezer
Publisher: name: arXiv
Year: 2014
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We study the fine structure of long-time quantum noise in correlation functions of AdS/CFT systems. Under standard assumptions of quantum chaos for the dynamics and the observables, we estimate the size of exponentially small oscillations and trace them back to geometrical features of the bulk system. The noise level is highly suppressed by the amount of dynamical chaos and the amount of quantum impurity in the states. This implies that, despite their missing on the details of Poincare recurrences, `virtual' thermal AdS phases do control the overall noise amplitude even at high temperatures where the thermal ensemble is dominated by large AdS black holes. We also study EPR correlations and find that, in contrast to the behavior of large correlation peaks, their noise level is the same in TFD states and in more general highly entangled states.
description: 30 pages. 4 figures
An application of two-spinors calculus to quantum field and quantum mechanics problems
Creators: name: Kulyabov, D. S.
name: Ulyanova, A. G.
Publisher: name: arXiv
Year: 2013
Subjects: subject: Quantum Physics (quant-ph)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: This paper describes the Lorentz two-spinors proposing to use them instead of Dirac four-spinors and quaternions.
description: in Russian, in English
Moyal deformations, W(1+8 )and celestial holography
Creators: name: Bu, Wei
name: Heuveline, Simon
name: Skinner, David
Publisher: name: Apollo - University of Cambridge Repository
Year: 2022
Subjects: Conformal and W Symmetry
Scattering Amplitudes
Higher Spin Symmetry
Non-Commutative Geometry

description: Abstract We consider the Moyal deformation of self-dual gravity. In the conformal primary basis, holomorphic collinear limits of the amplitudes of this theory show that it enjoys a perturbatively exact symmetry algebra LW∧ that generalises Lw∧, the loop algebra of the wedge algebra of w1+∞, which appears in self-dual gravity.
CONDITIONS FOR THE DEVELOPMENT OF SPECIAL TOURISM PRODUCTS OF MU CANG CHAI TOURISM DESTINATION, YEN BAI, VIETNAM
Creators: name: NGUYEN THI QUYNH HUONG
name: HOANG THI THAM
name: BUI THI QUYNH TRANG
name: NGUYEN THI LAN ANH
Publisher: name: Zenodo
Year: 2023
Subjects: Special Tourism Products, Mu Cang Chai, Yen Bai, Viet Nam.

description: Summary
The article studies the conditions for developing specific tourism products at the tourist destination of Mu Cang Chai, Yen Bai. The quantitative research method was used on a sample of 223 domestic tourists who had visited and experienced Mu Cang Chai, Yen Bai, Vietnam. The results show that the 7- condition model has a positive impact and is statistically significant, with the most important being specific tourism resources, policies to develop specific tourism products, tourism infrastructure, tourism human resources, tourism technical facilities, linkage and development cooperation, and tourism demand. On the basis of the obtained results, the study has proposed solutions and recommendations to improve the effectiveness of conditions for developing specific tourism products in the Mu Cang Chai tourist destination, contributing to the promotion of the development of tourism in Yen Bai province in the coming time.
A manually curated annotation characterises genomic features of P. falciparum lncRNAs.
Creators: name: Hoshizaki, Johanna
name: Adjalley, Sophie H
name: Thathy, Vandana
name: Judge, Kim
name: Berriman, Matthew
name: Reid, Adam J
name: Lee, Marcus CS
Publisher: name: Apollo - University of Cambridge Repository
Year: 2022
Subjects: Annotation
Manual curation
Noncoding
Plasmodium falciparum
lncRNA
long-read RNA sequencing.
Humans
RNA, Long Noncoding
Genomics
Malaria, Falciparum
Computational Biology

description: BACKGROUND: Important regulation occurs at the level of transcription in Plasmodium falciparum and growing evidence suggests that these apicomplexan parasites have complex regulatory networks. Recent studies implicate long noncoding RNAs (lncRNAs) as transcriptional regulators in P. falciparum. However, due to limited research and the lack of necessary experimental tools, our understanding of their role in the malaria-causing parasite remains largely unelucidated. In this work, we address one of these limitations, the lack of an updated and improved lncRNA annotation in P. falciparum. RESULTS: We generated long-read RNA sequencing data and integrated information extracted and curated from multiple sources to manually annotate lncRNAs. We identified 1119 novel lncRNAs and validated and refined 1250 existing annotations. Utilising the collated datasets, we generated evidence-based ranking scores for each annotation and characterised the distinct genomic contexts and features of P. falciparum lncRNAs. Certain features indicated subsets with potential biological significance such as 25 lncRNAs containing multiple introns, 335 lncRNAs lacking mutations in piggyBac mutagenic studies and lncRNAs associated with specific biologic processes including two new types of lncRNAs found proximal to var genes. CONCLUSIONS: The insights and the annotation presented in this study will serve as valuable tools for researchers seeking to understand the role of lncRNAs in parasite biology through both bioinformatics and experimental approaches.
Switchable Magnetic Bottles and Field Gradients for Particle Traps
Creators: name: Vogel, Manuel
name: Birkl, Gerhard
name: Quint, Wolfgang
name: von Lindenfels, David
name: Wiesel, Marco
Publisher: name: arXiv
Year: 2014
Subjects: subject: Atomic Physics (physics.atom-ph)
subject: FOS: Physical sciences

description: Versatile methods for the manipulation of individual quantum systems, such as confined particles, have become central elements in current developments in precision spectroscopy, frequency standards, quantum information processing, quantum simulation, and alike. For atomic and some subatomic particles, both neutral and charged, a precise control of magnetic fields is essen- tial. In this paper, we discuss possibilities for the creation of specific magnetic field configurations which find appli- cation in these areas. In particular, we pursue the idea of a magnetic bottle which can be switched on and off by transition between the normal and the superconducting phase of a suitable material in cryogenic environments, for example in trap experiments in moderate magnetic fields. Methods for a fine-tuning of the magnetic field and its linear and quadratic components in a trap are presented together with possible applications.
Additional file 1 of CCN3 is dynamically regulated by treatment and disease state in multiple sclerosis
Creators: name: Naughton, Michelle
name: Moffat, Jill
name: Eleftheriadis, George
name: Gallardo, Nira De La Vega
name: Young, Andrew
name: Falconer, John
name: Hawkins, Kristen
name: Pearson, Ben
name: Perbal, Bernard
name: Hogan, Andrew
name: Moynagh, Paul
name: Loveless, Sam
name: Robertson, Neil P.
name: Gran, Bruno
name: Kee, Rachael
name: Hughes, Stella
name: McDonnell, Gavin
name: Howell, Owain
name: Fitzgerald, Denise C.
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. Supplementary tables 1-5.
Agrypnus spinaparamerus Vats and Kashyap 1992
Creators: name: Kotru, Akash
name: Chandran, Nithya
name: Dubey, Anil Kumar
name: Prosvirov, Alexander S.
Publisher: name: Zenodo
Year: 2025
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Elateridae
Agrypnus
Agrypnus spinaparamerus

description: Agrypnus spinaparamerus Vats and Kashyap, 1992
Agrypnus spinaparamerus Vats and Kashyap, 1992: 112.
Type depository. Holotype (NPC-IARI).
Type locality. Haryana (Kurukshetra).
Distribution. India: Haryana (Chakraborty, Chakrabarti, 2000).
Literature. Vats and Kashyap (1992: 112): original description; Chakraborty and Chakrabarti (2000: 78): catalogue.
description: Published as part of Kotru, Akash, Chandran, Nithya, Dubey, Anil Kumar & Prosvirov, Alexander S., 2025, A catalogue of Indian Agrypninae Candèze, 1857 (Coleoptera: Elateridae), pp. 1-66 in Zootaxa 5614 (1) on page 23, DOI: 10.11646/zootaxa.5614.1.1, http://zenodo.org/record/15217075
TEACHER PREPARATION METHODS FOR EFFECTIVELY ORGANIZING LESSONS
Creators: name: Gaziev, Jobirkhon
Publisher: name: Zenodo
Year: 2023

description: In this article, the art of music enriches the spiritual world of a person, its influence on the conscious and spiritual world of a person, a practical tool of moral and aesthetic education, the role of music in the life of society and its influence on the field of music in our country. attention is fully informed.
The extracellular matrix and perineuronal nets in memory.
Creators: name: Fawcett, James W
name: Fyhn, Marianne
name: Jendelova, Pavla
name: Kwok, Jessica CF
name: Ruzicka, Jiri
name: Sorg, Barbara A
Publisher: name: Apollo - University of Cambridge Repository
Year: 2022
Subjects: Extracellular Matrix
Chondroitin Sulfate Proteoglycans
Neurons
Synapses
Dendrites
Neuronal Plasticity

description: All components of the CNS are surrounded by a diffuse extracellular matrix (ECM) containing chondroitin sulphate proteoglycans (CSPGs), heparan sulphate proteoglycans (HSPGs), hyaluronan, various glycoproteins including tenascins and thrombospondin, and many other molecules that are secreted into the ECM and bind to ECM components. In addition, some neurons, particularly inhibitory GABAergic parvalbumin-positive (PV) interneurons, are surrounded by a more condensed cartilage-like ECM called perineuronal nets (PNNs). PNNs surround the soma and proximal dendrites as net-like structures that surround the synapses. Attention has focused on the role of PNNs in the control of plasticity, but it is now clear that PNNs also play an important part in the modulation of memory. In this review we summarize the role of the ECM, particularly the PNNs, in the control of various types of memory and their participation in memory pathology. PNNs are now being considered as a target for the treatment of impaired memory. There are many potential treatment targets in PNNs, mainly through modulation of the sulphation, binding, and production of the various CSPGs that they contain or through digestion of their sulphated glycosaminoglycans.
description: Funding for this research came from: Center of Reconstruction Neuroscience – NEURORECON CZ.02.1.01/0.0/0.0/15_003/0000419 and Czech Science Agency 19-10365S. Medical Research Council MR/R004463, MR/V002694, Wings for Life (WFL-GB-04/19), IRP P172 to JWF. Epilepsy Research UK (P1807), Alzheimer’s Research UK, Wings for Life (WFL-UK-008-15), COST Action INNOGLY (CA18103) to JCFK. Good Samaritan Foundation of Legacy Health, and National Institutes of Health DA040965 and DA047121 to BAS.
Improved effective vertices in the multi-orbital Two-Particle Self-Consistent method from Dynamical Mean-Field Theory
Creators: name: Zantout, Karim
name: Backes, Steffen
name: Razpopov, Aleksandar
name: Lessnich, Dominik
name: Valenti, Roser
Publisher: name: arXiv
Year: 2022
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: In this work we present a multi-orbital form of the Two-Particle Self-Consistent approach (TPSC), here the effective local and static irreducible interaction vertices are determined by means of the Dynamical Mean-Field Theory (DMFT). This approach replaces the approximate ansatz equations for the double occupations $\langle n^{}_{α,σ}n^{}_{β,σ'}\rangle$ by sampling them directly for the same model using DMFT. Compared to the usual Hartree-Fock like ansatz, this leads to more accurate local vertices in the weakly correlated regime, and provides access to stronger correlated systems that were previously out of reach. This approach is extended by replacing the local component of the TPSC self-energy by the DMFT impurity self-energy, which results in an improved self-energy that incorporates strong local correlations but retains a non-trivial momentum-dependence. We find that this combination of TPSC and DMFT provides a significant improvement over the multi-orbital formulation of multi-orbital TPSC, as it allows to determine the components of the spin vertex without artificial symmetry assumptions, and opens the possibility to include the transversal particle-hole channel. The new approach is also able to remove unphysical divergences in the charge vertices in TPSC. We find a general trend that lower temperatures can be accessed in the calculation. Benchmarking single-particle quantities such as the local spectral function with other many-body methods we find significant improvement in the more strongly correlated regime.
description: 14 pages, 7 figures
Logarithmic Corrections to $N \geq 2$ Black Hole Entropy
Creators: name: Keeler, Cynthia
name: Larsen, Finn
name: Lisbao, Pedro
Publisher: name: arXiv
Year: 2014
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We revisit the computation of logarithmic corrections to black holes with N equal or greater than 2 supersymmetry. We employ an on-shell method that takes advantage of the symmetries in the AdS(2) x S**2 near horizon geometry. For bulk modes interactions are incorporated through the spectrum of chiral primaries that we derive afresh. The spectrum of boundary states is computed explicitly by analyzing gauge variations. Elementary heat kernels in 4D and 2D then give the logarithmic corrections to the black hole entropy. Our computation represents a streamlined and simplified derivation that agrees with the results recently found by A. Sen.
description: 30 pages+reference added
What the existing literature tells us about association between ankle-foot and hip in subjects with musculoskeletal disorders? A scoping review protocol
Creators: name: Manni, Tiziana
name: Lando, Alex
name: Scariato, Angela
name: Pregnolato, Giorgia
name: Turolla, Andrea
name: Pillastrini, Paolo
Publisher: name: figshare
Year: 2022
Subjects: subject: 110317 Physiotherapy
subject: FOS: Clinical medicine
subject: 110321 Rehabilitation and Therapy (excl. Physiotherapy)

description: Abstract Objective. The aim of this scoping review is to understand the extent and type of evidence in relation to ankle-foot and hip regional interdependence in subjects with musculoskeletal disorders. Introduction. “Regional interdependence” refers to the clinical observation that a primary musculoskeletal symptom may be related to or influenced by impairments from other body regions. Although it is a common clinical practice to assess and treat the ankle-foot in patients with other lower quarter impairments, very few studies looked specifically at the influence that the ankle-foot can have on outcomes related to hip region and vice-versa. Inclusion criteria. All type of studies considering subjects with musculoskeletal disorders with any correlation between ankle-foot and hip disfunctions and/or related clinical conditions. Methods. This scoping review will be performed in accordance with the Joanna Briggs Institute Methodology. MEDLINE, Cochrane Central, Scopus, Embase, PEDro database will be searched from inception to October 2022. Additional records will be identified through searching in grey literature and the reference lists of all relevant studies. No study design, publication type, data and language restrictions will be applied. Two reviewers will independently screen all abstracts and full-text studies for inclusion. A data collection form will be developed by the research team to extract the characteristics of the studies included. A tabular and accompanying narrative summary of the information will be provided. Conclusions. This will be the first scoping review to provide a comprehensive overview of the topic. Furthermore, any knowledge gaps of the topic will be identified.
Noise Enhanced Activity in a Complex Network
Creators: name: Choudhary, Anshul
name: Kohar, Vivek
name: sinha, Sudeshna
Publisher: name: arXiv
Year: 2013
Subjects: subject: Chaotic Dynamics (nlin.CD)
subject: Biological Physics (physics.bio-ph)
subject: Data Analysis, Statistics and Probability (physics.data-an)
subject: FOS: Physical sciences

description: We consider the influence of local noise on a generalized network of populations having positive and negative feedbacks. The population dynamics at the nodes is nonlinear, typically chaotic, and allows cessation of activity if the population falls below a threshold value. We investigate the global stability of this large interactive system, as indicated by the average number of nodal populations that manage to remain active. Our central result is that the probability of obtaining active nodes in this network is significantly enhanced under fluctuations. Further, we find a sharp transition in the number of active nodes as noise strength is varied, along with clearly evident scaling behaviour near the critical noise strength. Lastly, we also observe noise induced temporal coherence in the active sub-network, namely, there is an enhancement in synchrony among the nodes at an intermediate noise strength.
description: 7 pages, 11 figures
Supplementary Information for: "Dynamics of Cooperative Networks Associated with Gender Among South Indian Tamils" (Simpson & Power, 2022) from Dynamics of cooperative networks associated with gender among South Indian tamils
Creators: name: Simpson, Cohen R.
name: Power, Eleanor A.
Publisher: name: The Royal Society
Year: 2022
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 60801 Animal Behaviour

description: Supplementary Discussion, Supplementary Methods, and Supplementary Tables
Genealogy Tarikh Al-Tabari I Adam-Muhammad I Visualisation
Creators: name: Boekholt, Stijn
Publisher: name: Zenodo
Year: 2023
Subjects: Genealogy
Abu Ja'far Muhammad ibn Jarir al-Tabari
Al-Tabari
Adam to Muhammad
Tarikh al-Tabari Genealogy Project: Visualisation and Analysis

description: This file is part of the Tarikh al-Tabari Genealogy Project: Visualisation and Analysis. This project is still very much ongoing and will be updated in the future. This file contains the Master's thesis that I've written about this project.
Other uploads within this project
Thesis: https://doi.org/10.5281/zenodo.10066029
Register Genealogy: https://doi.org/10.5281/zenodo.10066103
Long-Period Charge Correlations in Charge-Frustrated Molecular theta-(BEDT-TTF)2X
Creators: name: Naka, Makoto
name: Seo, Hitoshi
Publisher: name: arXiv
Year: 2014
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Charge ordering (CO) with long-periodicities in a geometrically frustrated system, theta-(BEDT-TTF)2X, is numerically studied. We consider interacting fermion models on the anisotropic triangular lattice: the extended Hubbard model and the spinless fermion model, taking account of the inter-site Coulomb interactions on not only the nearest neighbor (NN) but also the next nearest neighbor (NNN) bonds. By applying Lanczos exact diagonalization method, we find that long-period charge correlations become dominant when NNN terms are included, in the charge-frustrated region. The calculated optical excitation spectra show that the charge transfer excitations in the long-period CO extend to a lower energy range compared to those in the short-period CO states including the 3-fold CO stabilized when NNN terms are absent. Our results suggest that the charge correlations experimentally observed in the title compounds near the CO insulating phase can be viewed as a tendency toward `tilted stripe'-type CO with large charge fluctuations.