cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Thermal conductance through molecular wires
Creators: name: Segal, Dvira
name: Nitzan, Abraham
name: Hanggi, Peter
Publisher: name: arXiv
Year: 2003
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: We consider phononic heat transport through molecular chains connecting two thermal reservoirs. For relatively short molecules at normal temperatures heat conduction is dominated by the harmonic part of the molecular force-field. We develop a general theory for the heat conduction through harmonic chains in 3-dimensions. A Landauer-type expression for the heat conduction is obtained, in agreement with other recent studies. We use this formalism to study the heat conduction properties of alkanes. For relatively short (1-30 carbon atoms) chains the length and temperature dependence of the molecular heat conduction result from the balance of three factors: (i) The molecular frequency spectrum in relation to the frequency cutoff of the thermal reservoirs, (ii) the degree of localization of the molecular normal modes and (iii) the molecule-heat reservoirs coupling. The fact that molecular modes at different frequency regimes have different localization properties gives rise to intricate dependence of the heat conduction on molecular length at different temperatures. For example, the heat conduction increases with molecular length for short molecular chains at low temperatures. Similar considerations apply for isotopically substituted disordered chains. Finally, we compare the heat conduction obtained from this microscopic calculation to that estimated by considering the molecule as a cylinder characterized by a macroscopic heat conduction typical to organic solids. We find that this classical model overestimates the heat conduction of single alkane molecules by about an order of magnitude at room temperature. Implications of the present study to the problem of heating in electrically conducting molecular junctions are pointed out.
description: 40 pages, 11 figures. J. Chem. Phys. Submitted
Novel chemical proteomics approaches to study N-myristoylation and N-terminal methionine excision
Creators: name: Goya Grocin, Andrea Goya
Publisher: name: Imperial College London
Year: 2020

description: N-terminal modifications may constitute the first modifications any protein acquires and can modulate protein function by altering protein stability and 3D structure, promoting or interfering with protein-protein interactions and regulating membrane targeting, localisation or secretion. Here, two interlinked N-terminal protein modifications have been studied: initiator methionine (iMet) excision and co-translational N-myristoylation. N-myristoylation involves de attachment of myristic acid, a 14-carbon saturated fatty acid, onto exposed N-terminal glycines of protein substrates. In humans, this reaction is catalysed by N-myristoyltransferases 1 and 2. The two NMT isoforms share a high degree of sequence and structural similarity, which has hindered the development of isoform-specific inhibitors to date and prevented the dissection of isoform- specific substrate pools. Using CRISPR/Cas9 in combination with a previously described metabolic labelling approach and whole proteome profiling, NMT1, and not NMT2, was defined as the main enzyme responsible for N-myristoylation of proteins in the cancer cell. In addition, a novel method was designed to accurately assess on-target activity of NMT inhibitors and the fate of N-myristoylated substrates across the whole proteome upon NMT inhibition. This new approach relies on post-lysis labelling of exposed N-terminal glycines by S. aureus sortase A (SrtA) and no longer relying on metabolic labelling, it can be applied to any type of biological sample. Methionine aminopeptidases (MetAPs) catalyse initiator methionine (iMet) removal from nascent proteins and are essential to maintain healthy proteome dynamics by priming other N-terminal modifications such as N-acetylation or N-myristoylation and modulating protein localisation and stability. MetAP2 has been explored by pharmaceutical companies for decades for the treatment of cancer and obesity. However, the links between MetAP2 inhibition and phenotypic effects are still poorly understood. Here, a novel chemical proteomics workflow is proposed to elucidate the substrates of MetAP2 systematically and uncover the missing link between MetAP2 inhibition and phenotype. This new strategy is based on metabolic labelling of cells with the methionine analogue azidohomoalanine (AHA) and in combination with specific pharmacological inhibition of MetAP2, allowed identification of >70 substrates of MetAP2, 94% of which were unknown until reported here. Together, this work provides fundamental insights into the biological role and importance of N-myristoylation and iMet excision in cancer and shapes the path for future steps in the use of NMT and MetAP2 inhibitors for the treatment of human disease.
Additional file 6 of Genome-wide analyses of cassava Pathogenesis-related (PR) gene families reveal core transcriptome responses to whitefly infestation, salicylic acid and jasmonic acid
Creators: name: Irigoyen, Maria
name: Garceau, Danielle
name: Bohorquez-Chaux, Adriana
name: Lopez-Lavalle, Luis
name: Perez-Fons, Laura
name: Fraser, Paul
name: Walling, Linda
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Additional file 6 Venn diagrams comparing cluster 1 upregulated PR genes among four whitefly-susceptible cassava genotypes during whitefly infestation. (a) Comparison of cluster 1 DEGs in COL2246, COL1468, 60444, and TME3 during whitefly infestation. (b) Comparison of COL2246 cluster 1 DEGs at 1–22 dpi. (c) Comparison of COL1468 cluster 1 DEGs at 1–22 dpi. (d) Comparison of 60444 cluster 1 DEGs at 1–22 dpi. (e) Comparison of TME3 cluster 1 DEGs at 1–22 dpi.
Investigation of Failure Behaviour of a Glass-Fibre Reinforced Thermoplastic Composite
Creators: name: Liang, Jiaai
Publisher: name: The Australian National University
Year: 2017
Subjects: Thermoplastic
Composite
Failure

description: This work focuses on the fibre dominated failure of the woven thermoplastic fibre-reinforced composite. The novel experimental methodology induced failures in different deformation modes for the Glass Fibre Reinforced Polypropylene (GFRP) composite studied. Hence the path dependency effect on the failure of this material system can be studied experimentally through the three-dimensional (3D) Digital Image Correlation (DIC) system. A novel failure metric based on the strains experienced by the fibre bundles is developed. From the experimental results, this failure metric is found to be able to eliminate path dependency effect and is independent of fibre orientations. In Finite Element Analysis (FEA), this failure metric is incorporated with the simulations as a virtual tool to predict failures of the GFRP material. From the experimental results, failure envelopes with the failure metric based on the principal strain and fibre strain are developed respectively. Both failure envelopes are implemented in the FEA simulation. The simulations incorporated with the failure metric in principal strain cannot accurately predict failure for the GFRP material system. The simulations incorporated with the failure metric in fibre strain, on the contrary, are found to be able to provide predictions that have a better agreement with the experimental results.
Thalassaphorura alborufescens
Creators: name: Thibaud, Jean-Marc
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Poduromorpha
Onychiuridae
Thalassaphorura
Thalassaphorura alborufescens

description: Thalassaphorura alborufescens (Vogler, 1895)
Lipura alborufescens Vogler, 1895: 31.
Thalassaphorura alborufescens – Pomorski 1998: 135.
DISTRIBUTION. — Corse. Poinsot-Balaguer 1978.
description: Published as part of Thibaud, Jean-Marc, 2017, Catalogue des collemboles de France, pp. 297-436 in Zoosystema 39 (3) on page 342, DOI: 10.5252/z2017n3a1, http://zenodo.org/record/5496272
Spectra and decays of pi pi and pi K atoms
Creators: name: Schweizer, J.
Publisher: name: arXiv
Year: 2004
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We describe the spectra and decays of pi pi and pi K atoms within a non-relativistic effective field theory. The evaluations of the energy shifts and widths are performed at next-to-leading order in isospin symmetry breaking. We provide general formulae for all S-states, and discuss the states with angular momentum one in some detail. The prediction for the lifetime of the pi K atom in its ground-state yields tau = (3.7 \pm 0.4) * 10^{-15} sec.
description: 37 pages, 6 figures
Sum frequency generation spectroscopy of the attachment disc of a spider
Creators: name: Zhao, Yue
name: Liang, Lin
name: Li, Yanrong
name: Hien, Khuat Thi Thu
name: Mizutani, Goro
name: Rutt, Harvey N.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Applied Physics (physics.app-ph)
subject: FOS: Physical sciences

description: The pyriform silk of the attachment disc of a spider was studied using infrared-visible vibrational sum frequency generation (SFG) spectroscopy. The spider can attach dragline and radial lines to many kinds of substrates in nature (concrete, alloy, metal, glass, plant branches, leaves, etc.) with the attachment disc. The adhesion can bear the spider's own weight, and resist the wind on its orb web. From our SFG spectroscopy study, the NH group of arginine side chain and/or NH$_{2}$ group of arginine and glutamine side chain in the amino acid sequence of the attachment silk proteins are suggested to be oriented in the disc. It was inferred from the observed doublet SFG peaks at around 3300 cm$^{-1}$ that the oriented peptide contains two kinds of structures.
description: 21 pages, 8 figures
SLEEPER: interpretable Sleep staging via Prototypes from Expert Rules
Creators: name: Al-Hussaini, Irfan
name: Xiao, Cao
name: Westover, M. Brandon
name: Sun, Jimeng
Publisher: name: arXiv
Year: 2019
Subjects: subject: Machine Learning (cs.LG)
subject: Signal Processing (eess.SP)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: Sleep staging is a crucial task for diagnosing sleep disorders. It is tedious and complex as it can take a trained expert several hours to annotate just one patient's polysomnogram (PSG) from a single night. Although deep learning models have demonstrated state-of-the-art performance in automating sleep staging, interpretability which defines other desiderata, has largely remained unexplored. In this study, we propose Sleep staging via Prototypes from Expert Rules (SLEEPER), which combines deep learning models with expert defined rules using a prototype learning framework to generate simple interpretable models. In particular, SLEEPER utilizes sleep scoring rules and expert defined features to derive prototypes which are embeddings of PSG data fragments via convolutional neural networks. The final models are simple interpretable models like a shallow decision tree defined over those phenotypes. We evaluated SLEEPER using two PSG datasets collected from sleep studies and demonstrated that SLEEPER could provide accurate sleep stage classification comparable to human experts and deep neural networks with about 85% ROC-AUC and .7 kappa.
description: Machine Learning for Healthcare Conference (MLHC) 2019. Proceedings of Machine Learning Research 106
Mapping a cloud of ultracold atoms onto a miniature storage ring
Creators: name: Rooijakkers, Wilbert
Publisher: name: arXiv
Year: 2003
Subjects: subject: Atomic Physics (physics.atom-ph)
subject: FOS: Physical sciences

description: We describe how to realize magnetic and magneto-optical confinement of ultracold atoms in a torus with adjustable diameter and how an elliptical cloud of ultracold atoms can be adiabatically transformed to have a toroidal shape. An experiment with cold 87Rb atoms demonstrates the feasibility of shape transformations. These techniques can be used for atom interferometry and quantum computation.
description: 15 pages, including 6 figures
Additional file 2 of Efficacy and safety of Ojeok-san plus Saengmaek-san for gastroesophageal reflux-induced chronic cough: protocol for a pilot, randomized, double-blind, placebo-controlled trial
Creators: name: Bhang, Yeon
name: Kwan-Il Kim
name: Jaehyo Kim
name: Junmo Ahn
name: Hwan-Su Jung
name: Changsop Yang
name: Seok-Jae Ko
name: Youngmin Bu
name: Park, Jae-Woo
name: Park, Kyoung
name: Hee-Jae Jung
name: Jun-Hwan Lee
name: Beom-Joon Lee
Publisher: name: figshare
Year: 2020
Subjects: subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2. SPIRIT 2013 checklist: recommended items to address in a clinical trial protocol and related documents
Vibrational excitation mechanism in tunneling spectroscopy beyond the Franck-Condon model
Creators: name: Reecht, Gaël
name: Krane, Nils
name: Lotze, Christian
name: Zhang, Lei
name: Briseno, Alejandro L.
name: Franke, Katharina J.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Vibronic spectra of molecules are typically described within the Franck-Condon model. Here, we show that highly resolved vibronic spectra of large organic molecules on a single layer of MoS$_{2}$ on Au(111) show spatial variations in their intensities, which cannot be captured within this picture. We explain that vibrationally mediated perturbations of the molecular wave functions need to be included into the Franck-Condon model. Our simple model calculations reproduce the experimental spectra at arbitrary position of the STM tip over the molecule in great detail.
title: Trials and Tribulations of Humanizing Mice for Cancer Research
Creators: name: Ruedlinger, Brittney
Publisher: name: Old Dominion University Libraries
Year: 2021

description: Cancers are aggressive, evasive, and ruthless killers, claiming millions of lives every year. Cancers are heterogeneous and there is often no single, clearly defined problem as they harness and manipulate a multitude of fundamental mechanisms at the very essence of life. To investigate these mechanisms and vet potential interventive therapies, humanized mice offer a unique model as a prelude to the use of nanosecond pulse stimulation (NPS), a pulse power technology applying nanosecond duration, high electric field pulses, to ablate human tumors. Immunodeficient mouse strains, NSG and NSG-SGM3, were engrafted with human immune cells and human tumors, which would allow us to study the effects of NPS therapy on the human tumor and the human immune system, albeit not without trials and tribulations. Here we show that mice engrafted with human cord blood CD34+ hematopoietic stem cells (hCD34+ HSC) lack consistency in expansion and chimerism, or variety of immune cell types. Unfortunately, mice that developed the human immune system rejected the human tumors without treatment, while mice that rejected the immune system developed the human tumors. Therefore, we had mice with human immune systems and no tumor to treat, and mice with tumors to treat yet no immune system to study. In non-humanized mice, NPS induced complete tumor death in the patient derived mammary cancer xenograft (PDX) model, but not in the MDA-MB-231 VIM-RFP mammary cancer cell-derived xenograft (CDX) model. The absence of NPS elimination of the CDX is the only known NPS cancer failure and requires further study.
Protocols and Resources for New Generation Continuous Variable Quantum Key Distribution
Creators: name: Thearle, Oliver
Publisher: name: The Australian National University
Year: 2017
Subjects: Quantum Optics
Quantum Key Distribution
Bell test
Continuous variable
Experiment

description: Quantum optics has been developing into a promising platform for future generation communications protocols. Much of this promise so far has come from the development of quantum key distribution (QKD). The majority of the development of QKD is done with discrete variables (DV), i.e. qubits with the underlying system of single photons. This is one interpretation of an optical field. Alternatively an optical field can be interpreted as wave with the continuous variable (CV) observables of phase and amplitude. This interpretation comes with the advantage of access to high efficiency detection at room temperature and deterministic sources at the cost of susceptibility to noise in lossy channels. This thesis presents an investigation of protocols and resources for the next generation of CV QKD protocols with two directions, the development of quantum state resources and the development of QKD protocols.This thesis starts with the details on the on going development of a low loss squeezed state resource using OPA for use in future communication and estimation experiments. So far the OPA has produced 11dB of squeezing with 13dB predicted with reasonable improvements to losses and locking. Being able to perform a Bell test with a CV Bell state is also key for future CV QKD protocols. Originally developed for DV systems the Bell test is a fundamental test of quantum mechanics. Here the first experimental demonstration of an optical CV bell test is presented. The experiment violated a CHSH Bell inequality with jBj = 2:31. This violation holds promise for being able to realise new device or source independent CV protocols. The second half of this thesis proposes a channel parameter estimation protocol based on the method of moments and presents the results of a one side device independent CV QKD demonstration based on the family of Gaussian QKD protocols. The proposed channel parameter estimation protocol through the use of the method of moments is able to use information usually disregarded for estimation of an adversaries information. The result does not allow for an increase in range of a fully optimised protocol but can increase the key rate by an order of magnitude with high loss channels. Using a newly found entroptic uncertainty relation for CV tripartite states a new security proof was applied to the family of Gaussian CV QKD protocols. This resulted in the discovery of six new protocols with the special property of being one side device independent. Using the new security proof three of the protocols were demonstrated with a positive key rate.
High-resolution study of excited states in 158Gd with (p,t) reactions
Creators: name: Levon, A. I.
name: Bucurescu, D.
name: Costache, C.
name: Faestermann, T.
name: Hertenberger, R.
name: Ionescu, A.
name: Lica, R.
name: Magner, A. G.
name: Mihai, C.
name: Mihai, R.
name: Nita, C. R.
name: Pascu, S.
name: Shevchenko, K. P.
name: Shevchuk, A. A.
name: Turturica, A.
name: Wirth, H. -F.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: The excitation spectra in the deformed nucleus 158Gd have been studied with high energy resolution by means of the (p,t) reaction using the Q3D spectrograph facility at the Munich Tandem accelerator. The angular distributions of tritons were measured for more than 200 excited states seen in the triton spectra up to 4.3 MeV. A number of 36 excited 0+ states (five tentative), have been assigned by comparison of experimental angular distributions with the calculated ones using the CHUCK code. Assignments for levels with higher spins are the following: 95 for 2+ states, 64 for 4+ states, 14 for 6+ states and about 20 for negative parity states. Sequences of states which can be treated as rotational bands are selected. The analysis of the moments of inertia defined for these bands is carried out. This high number of excited states in a deformed nucleus, close to a complete level scheme, constitutes a very good ground to check models of nuclear structure. The large ensembles of states with the same spin-parity offer unique opportunities for statistical analysis. Such an analysis for the 0+, 2+ and 4+ states sequences, for all K-values and for well-determined projections K of the angular momentum is performed. The obtained data may indicate on a K symmetry breaking. Experimental data are compared with interacting boson model (IBM) calculations using the spdf version of the model. The energies of the low-lying levels, the transition probabilities in the first bands and the distribution in transfer intensity of the 0+ states are calculated and compared with experiment.
description: 25 pages, 15 figures
Computation of Milnor numbers and critical values at infinity
Creators: name: Bodin, Arnaud
Publisher: name: arXiv
Year: 2003
Subjects: subject: Algebraic Geometry (math.AG)
subject: Geometric Topology (math.GT)
subject: FOS: Mathematics

description: We describe how to compute topological objects associated to a polynomial map of several complex variables with isolated singularities. These objects are: the affine critical values, the affine Milnor numbers for all irregular fibers, the critical values at infinity, and the Milnor numbers at infinity for all irregular fibers. Then for a family of polynomials we detect parameters where the topology of the polynomials can change. Implementation and examples are given with the computer algebra system Singular.
description: 9 pages.To download the libraries for Singular see http://www-gat.univ-lille1.fr/~bodin/
Meloe (Meloe) rathjensi Borchmann 1938
Creators: name: Bologna, Marco A.
name: Turco, Federica
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Meloidae
Meloe
Meloe rathjensi

description: Meloe (Meloe) rathjensi Borchmann, 1938
 Distribution. Endemic to Yemen.
 New records. Yemen: Yemen, 1 ex. (BMNH). Sana’a, Sheraton Hotel, 2400 m a.s.l., 29.xii.1998 and 5.i.1999, B. Osella coll. 14 exx. (CB).
description: Published as part of Bologna, Marco A. & Turco, Federica, 2007, The Meloidae (Coleoptera) of the United Arab Emirates with an updated Arabian checklist, pp. 1-33 in Zootaxa 1625 (1) on page 30, DOI: 10.11646/zootaxa.1625.1.1, http://zenodo.org/record/5103300
Additional file 4: of Revealing the dominant long noncoding RNAs responding to the infection with Colletotrichum gloeosporioides in Hevea brasiliensis
Creators: name: Yin, Hongyan
name: Zhang, Xiaodong
name: Zhang, Bei
name: Luo, Hongli
name: He, Chaozu
Publisher: name: figshare
Year: 2019
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Plant Biology
subject: Virology
subject: Computational Biology

description: Figure S3. The relative expressions by real-time quantitative reverse transcription PCR (qRT-PCR) in re-sampled non-inoculated control (CK) and inoculated samples (INF) of (A) lncRNA11254, (B) lncRNA11041 and (C) lncRNA11205. Values were presented as the mean ± SE of three independent experiments and * indicated significant differences. (P < 0.05) (PDF 15 kb)
Additional file 1 of Efficacy and safety of Ojeok-san plus Saengmaek-san for gastroesophageal reflux-induced chronic cough: protocol for a pilot, randomized, double-blind, placebo-controlled trial
Creators: name: Bhang, Yeon
name: Kwan-Il Kim
name: Jaehyo Kim
name: Junmo Ahn
name: Hwan-Su Jung
name: Changsop Yang
name: Seok-Jae Ko
name: Youngmin Bu
name: Park, Jae-Woo
name: Park, Kyoung
name: Hee-Jae Jung
name: Jun-Hwan Lee
name: Beom-Joon Lee
Publisher: name: figshare
Year: 2020
Subjects: subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. Informed consent form.
Standard and Embedded Solitons in Nematic Optical Fibers
Creators: name: Rodriguez, R. F.
name: Reyes, J. A.
name: Fujioka, A. Espinosa-Ceron J.
name: Malomed, B. A.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: A model for a non-Kerr cylindrical nematic fiber is presented. We use the multiple scales method to show the possibility of constructing different kinds of wavepackets of transverse magnetic (TM) modes propagating through the fiber. This procedure allows us to generate different hierarchies of nonlinear partial differential equations (PDEs) which describe the propagation of optical pulses along the fiber. We go beyond the usual weakly nonlinear limit of a Kerr medium and derive an extended Nonlinear Schrodinger equation (eNLS) with a third order derivative nonlinearity, governing the dynamics for the amplitude of the wavepacket. In this derivation the dispersion, self-focussing and diffraction in the nematic are taken into account. Although the resulting nonlinear $PDE$ may be reduced to the modified Korteweg de Vries equation (mKdV), it also has additional complex solutions which include two-parameter families of bright and dark complex solitons. We show analytically that under certain conditions, the bright solitons are actually double embedded solitons. We explain why these solitons do not radiate at all, even though their wavenumbers are contained in the linear spectrum of the system. Finally, we close the paper by making comments on the advantages as well as the limitations of our approach, and on further generalizations of the model and method presented.
description: "Physical Review E, in press"
Thalassaphorura debilis
Creators: name: Thibaud, Jean-Marc
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Poduromorpha
Onychiuridae
Thalassaphorura
Thalassaphorura debilis

description: Thalassaphorura debilis (Moniez, 1890)
Lipura debilis Moniez, 1890b: 346.
Thalassaphorura debilis – Fjellberg 1998: 109.
DISTRIBUTION. — Calvados. Estuaire de la Seulles (Denis 1924c).
Finistère. Rivièrede la Penzé près de Morlaix, Roscoff, Île de Batz, Aber Wrach, Aber Benoît, Lanildut (Delamare Deboutteville 1947). — Prat-ar-Coum prèsde Lannilis (Delamare Deboutteville 1953).
Loire-Atlantique. Plage du Croisic (Lécaillon 1901, A. neglecta).
Pas-de-Calais. Pointeaux Oiesprèsd’Ambleteuse (Moniez 1890b). — Willem 1925a. — Embouchure de la Slack à Wimereux (Sollaud 1925; Denis 1924c).
Pyrénées Orientales. Plage de Peyrefitte (Angelier 1947). — Lagune du Racou à Banyuls-sur-Mer (Delamare Deboutteville 1950d).
Vendée. Île-d’Yeu (Denis 1923a).
TAXONOMIE. — Moniez 1890b (redescription); Denis 1924c (redescription); Willem 1925a (redescription).
description: Published as part of Thibaud, Jean-Marc, 2017, Catalogue des collemboles de France, pp. 297-436 in Zoosystema 39 (3) on page 342, DOI: 10.5252/z2017n3a1, http://zenodo.org/record/5496272
Violation of Bell inequality and entanglement of decaying Werner states
Creators: name: Miranowicz, Adam
Publisher: name: arXiv
Year: 2004
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Bell-inequality violation and entanglement, measured by Wootters' concurrence and negativity, of two qubits initially in Werner or Werner-like states coupled to thermal reservoirs are analyzed within the master equation approach. It is shown how this simple decoherence process leads to generation of states manifesting the relativity of two-qubit entanglement measures.
description: 7 pages, 4 figures, to appear in Phys. Lett. A
Algebraic solution and coherent states for the Dirac oscillator interacting with the Aharonov-Casher system in the cosmic string background
Creators: name: Salazar-Ramírez, M.
name: Ojeda-Guillén, D.
name: Mota, R. D.
name: Martínez-Nuño, J. A.
name: Cordero-López, M. R.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We introduce an $SU(1,1)$ algebraic approach to study the $(2+1)$-Dirac oscillator in the presence of the Aharonov-Casher effect coupled to an external electromagnetic field in the Minkowski spacetime and the cosmic string spacetime. This approach is based on a quantum mechanics factorization method that allows us to obtain the $su(1,1)$ algebra generators, the energy spectrum and the eigenfunctions. We obtain the coherent states and their temporal evolution for each spinor component of this problem. Finally, for these problems, we calculate some matrix elements and the Schrödinger uncertainty relationship for two general $SU(1,1)$ operators.
description: 19 pages
Additional file 5 of Genome-wide analyses of cassava Pathogenesis-related (PR) gene families reveal core transcriptome responses to whitefly infestation, salicylic acid and jasmonic acid
Creators: name: Irigoyen, Maria
name: Garceau, Danielle
name: Bohorquez-Chaux, Adriana
name: Lopez-Lavalle, Luis
name: Perez-Fons, Laura
name: Fraser, Paul
name: Walling, Linda
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Additional file 5 Venn diagrams comparing cluster 9 downregulated PR genes among four whitefly-susceptible cassava genotypes during whitefly infestation. (a) Comparison of cluster 9 DEGs in COL2246, COL1468, 60444, and TME3 during whitefly infestation. (b) Comparison of COL2246 cluster 9 DEGs at 1–22 dpi. (c) Comparison of COL1468 cluster 9 DEGs at 1–22 dpi. (d) Comparison of 60444 cluster 9 DEGs at 1–22 dpi. (e) Comparison of TME3 cluster 9 DEGs at 1–22 dpi.
Einstein was Wrong: Newtonian Dynamics Can Disagree Completely with Relativistic Dynamics at Low Speed
Creators: name: Lan, Boon Leong
Publisher: name: arXiv
Year: 2003
Subjects: subject: Classical Physics (physics.class-ph)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Chaotic Dynamics (nlin.CD)
subject: FOS: Physical sciences

description: According to Einstein, the trajectory of a particle that is predicted by special relativistic mechanics is well approximated by the trajectory predicted by Newtonian mechanics if the particle speed is low, i.e., much less than the speed of light. However, in this paper, it is shown with a counterexample Hamiltonian dynamical system that Newtonian dynamics can eventually disagree completely with relativistic dynamics even though the particle speed is low. After the breakdown of the agreement, either the Newtonian description is no longer correct or the relativistic description is no longer correct or both descriptions are no longer correct for the low speed motion.
description: minor changes
Serum insulin-like growth factor-1, C-reactive protein, genetic susceptibility and new-onset chronic kidney diseases
Creators: name: Zhang, Yuanyuan
name: Zhang, Yanjun
name: Ye, Ziliang
name: Yang, Sisi
name: liu, mengyi
name: Zhou, Chun
name: He, Panpan
name: Wu, Qimeng
name: Gan, Xiaoqin
name: Qin, Xianhui
Publisher: name: figshare
Year: 2022
Subjects: Diseases

description: Supplementary figures and tables of manuscript "Serum insulin-like growth factor-1, C-reactive protein, genetic susceptibility and new-onset chronic kidney diseases".
Horia fabriciana Betrem 1929
Creators: name: Bologna, Marco A.
name: Turco, Federica
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Meloidae
Horia
Horia fabriciana

description: Horia fabriciana Betrem, 1929
 Distribution. Widely distributed in the eastern and northeastern Africa and through the Arabian Peninsula (recorded from Saudi Arabia and Yemen), east to the Indian subcontinent. New for the U.A.E.
 New records. Saudi Arabia: Red Sea coasts, 1849, Arnaud coll. 1 ex. (MNHN); Zebib env., 1853, Arnaud coll. 1 ex (MNHN).
 U.A.E.: Al Aïn (?), Farm Fujira, 20.11.2003, Arwa coll. 1 ex. (University of Al Aïn, Department of Biology Insect Collection) together with 3 specimens of Xylocopa sp. (black or with yellow pronotum), possible hosts.
description: Published as part of Bologna, Marco A. & Turco, Federica, 2007, The Meloidae (Coleoptera) of the United Arab Emirates with an updated Arabian checklist, pp. 1-33 in Zootaxa 1625 (1) on page 30, DOI: 10.11646/zootaxa.1625.1.1, http://zenodo.org/record/5103300
Accurately identifying vertebral levels in large datasets
Creators: name: Elton, Daniel C.
name: Sandfort, Veit
name: Pickhardt, Perry J.
name: Summers, Ronald M.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Image and Video Processing (eess.IV)
subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Computer and information sciences
subject: I.5.1; I.2.10

description: The vertebral levels of the spine provide a useful coordinate system when making measurements of plaque, muscle, fat, and bone mineral density. Correctly classifying vertebral levels with high accuracy is challenging due to the similar appearance of each vertebra, the curvature of the spine, and the possibility of anomalies such as fractured vertebrae, implants, lumbarization of the sacrum, and sacralization of L5. The goal of this work is to develop a system that can accurately and robustly identify the L1 level in large heterogeneous datasets. The first approach we study is using a 3D U-Net to segment the L1 vertebra directly using the entire scan volume to provide context. We also tested models for two class segmentation of L1 and T12 and a three class segmentation of L1, T12 and the rib attached to T12. By increasing the number of training examples to 249 scans using pseudo-segmentations from an in-house segmentation tool we were able to achieve 98% accuracy with respect to identifying the L1 vertebra, with an average error of 4.5 mm in the craniocaudal level. We next developed an algorithm which performs iterative instance segmentation and classification of the entire spine with a 3D U-Net. We found the instance based approach was able to yield better segmentations of nearly the entire spine, but had lower classification accuracy for L1.
description: Accepted for publication in Proceedings of SPIE 2020: Medical Imaging
A reciprocal Wald theorem for varying gravitational function
Creators: name: Fay, Stephane
Publisher: name: arXiv
Year: 2003
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We study when a cosmological constant is a natural issue if it is mimicked by the potential of a massive Hyperextended Scalar Tensor theory with a perfect fluid for Bianchi type I and V models. We then deduce a reciprocal Wald theorem giving the conditions such that the potential tends to a non vanishing constant when the gravitational function varies. We also get the conditions allowing the potentiel to vanish or diverge.
description: 13 pages
Volatile apocarotenoid biosynthesis and carotenoid catabolism in Arabidopsis thaliana
Creators: name: Rivers, John Yates
Publisher: name: The Australian National University
Year: 2017
Subjects: Arabidopsis thaliana
apocarotenoids
carotenoids
apocarotenoid signals
ACS
volatiles
carotenoid cleavage dioxygenase
CCD
plant metabolism
solid-phase microextraction
SPME
gas-chromatography mass spectrometry
GC/MS
electron ionisation
EI

description: Carotenoids are essential for plant photosynthesis. But, the story doesn’t end there: volatile apocarotenoids, carotenoid oxidative cleavage products, are important plant fragrances and semiochemicals, and some are believed to be so-called ‘apocarotenoid signals’ (ACS), regulating plant processes. From in vitro experiments, apocarotenoids are known to be formed either by carotenoid cleavage dioxygenases (CCDs) or non-enzymatic oxidation. But, in planta mechanisms are in many cases unclear. Are there volatile apocarotenoids yet to be discovered? Are volatile apocarotenoids formed via CCD or non-enzymatic processes in planta? And are some volatile apocarotenoids ACSs? To study volatile apocarotenoid metabolism in planta, a solid phase microextraction (SPME) gas chromatography mass spectrometry (GC/MS) protocol for analysing volatile apocarotenoids was developed. I also detoured to examine a new MS ionisation technology, cold electron ionisation (cold-EI). This technology improves molecular mass determination via GC/MS. The ability of cold-EI to enhance GC/MS plant volatile identification (via provision of molecular mass data) was evaluated. SPME-GC/MS was then applied to analyse volatile apocarotenoid profiles from the model plant Arabidopsis thaliana. Col-0 (wild-type) and ccd-loss-of-function single and double mutants were analysed, as were the Arabidopsis ccr2 mutant and corresponding ccr2-background ccd mutants. ccr2 accumulates linear carotenoids not typically observed in Arabidopsis, and I’ve found it also emits exotic volatile apocarotenoids. A more-targeted study of volatile apocarotenoids and CCD1 and CCD4 activity during senescence was also performed. This thesis discusses aspects of analytical method development, specifically optimisation and applications of SPME sampling and cold-EI technology. Using untargeted SPME-GC/MS volatile metabolomics, a remarkable breadth of known and putative volatile apocarotenoids was uncovered in Arabidopsis. Evidence suggests CCDs barely contribute to volatile apocarotenoid production, most likely producing non-volatile apocarotenoids instead. Volatile apocarotenoids seem to be formed mainly via carotenoid non-enzymatic oxidation. My results suggest carotenoid turnover in photosynthetic tissues is important: volatile apocarotenoid production often increases markedly when CCD function is lost. Despite previous studies’ results, no new evidences were found for CCD-derived ACS contributing to either the ccr2 phenotype or senescence retardation.
Additional file 5: of Revealing the dominant long noncoding RNAs responding to the infection with Colletotrichum gloeosporioides in Hevea brasiliensis
Creators: name: Yin, Hongyan
name: Zhang, Xiaodong
name: Zhang, Bei
name: Luo, Hongli
name: He, Chaozu
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Marine Biology

description: Figure S4. The relative expressions of miRNAs in rubber tree mesophyll protoplasts. (A) The relative expressions of miRNA397 in rubber tree mesophyll protoplasts overexpressing lncRNA11041 (lnc11041+) and control (ctl). (B) The relative expressions of miRNA395 in rubber tree mesophyll protoplasts overexpressing lncRNA11205 (lnc11205+) and control. (PDF 12 kb)
Zonitoschema gibdoana
Creators: name: Bologna, Marco A.
name: Turco, Federica
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Meloidae
Zonitoschema
Zonitoschema gibdoana

description: Zonitoschema gibdoana (Kaszab, 1956)
 Distribution. Sahelian species, recorded from Gambia, Tchad, Sudan, Kenya and Tanzania, and from Saudi Arabia.
 New records. Saudi Arabia: Wadi Yiba, 18°55’N 41°15’E, 29.iii–148, B. P. Uvarov coll. 1 ex. (BMNH).
 Remarks. The taxonomy of the whole genus needs a complete revision and the identification of most species is primarily based on the colouration of antennomeres and legs. The American genus Pseudozonitis Dillon, 1952 could be a synonym of Zonitoschema Péringuey, 1909 (Pinto & Bologna 1999; Bologna & Pinto 2002).
description: Published as part of Bologna, Marco A. & Turco, Federica, 2007, The Meloidae (Coleoptera) of the United Arab Emirates with an updated Arabian checklist, pp. 1-33 in Zootaxa 1625 (1) on page 30, DOI: 10.11646/zootaxa.1625.1.1, http://zenodo.org/record/5103300
Thalassaphorura zschokkei
Creators: name: Thibaud, Jean-Marc
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Poduromorpha
Onychiuridae
Thalassaphorura
Thalassaphorura zschokkei

description: Thalassaphorura zschokkei (Handschin, 1919)
Onychiuruszschokkei Handschin, 1919: 71. Thalassaphorura zschokkei – Pomorski 1998: 139.
DISTRIBUTION. — Bouches-du-Rhône. Camargue (Poinsot 1973). Var. La Gardiole de Rians, près de Pourrières (Poinsot-Balaguer & Sadaka 1986). — Sadaka & Poinsot-Balaguer 1987. — Sadaka etal. 1989.
PHYSIOLOGIE. — Sadaka etal. 1989 (régime alimentaire).
ÉCOLOGIE. — Poinsot 1973; Poinsot-Balaguer & Sadaka 1986; Sadaka & Poinsot-Balaguer 1987 (régime alimentaire).
Famille TULLBERGIIDAE Bagnall, 1935
description: Published as part of Thibaud, Jean-Marc, 2017, Catalogue des collemboles de France, pp. 297-436 in Zoosystema 39 (3) on page 342, DOI: 10.5252/z2017n3a1, http://zenodo.org/record/5496272
On the variable-charged black holes in General Relativity: Hawking's radiation and naked singularities
Creators: name: Ibohal, Ng
Publisher: name: arXiv
Year: 2004
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: In this paper we study the Hawking radiation in Reissner-Nordstrom and Kerr-Newman black holes by considering the charge to be the function of radial coordinate.
description: LaTex, P. 16
Ascodipteron siamense Speiser 1903
Creators: name: Hastriter, Michael W.
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Hippoboscidae
Ascodipteron
Ascodipteron siamense

description: Ascodipteron siamense Speiser, 1903
 Ascodipteron siamense Speiser, 1903: 121–126. Nomen dubium.
 Remarks. Speiser described A. siamense from three syntypes, none of which could be located and are presumed lost. The brevity of Speiser’s description, lack of illustrations, and missing type material, renders an identification of A. siamense impossible. The name is therefore considered a nomen dubium.
description: Published as part of Hastriter, Michael W., 2007, A review of Ascodipterinae (Diptera: Streblidae) of the Oriental and Australasian regions with a description of three new species of Ascodipteron Adensamer and a key to the subfamily, pp. 1-32 in Zootaxa 1636 (1) on page 18, DOI: 10.11646/zootaxa.1636.1.1, http://zenodo.org/record/5103367
Extended radio emission associated with a breakout eruption from the back side of the Sun
Creators: name: Morosan, D. E.
name: Palmerio, E.
name: Lynch, B. J.
name: Kilpua, E. K. J.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Context. Coronal mass ejections (CMEs) on the Sun are the largest explosions in the Solar System that can drive powerful plasma shocks. The eruptions, shocks, and other processes associated to CMEs are efficient particle accelerators and the accelerated electrons in particular can produce radio bursts through the plasma emission mechanism. Aims. Coronal mass ejections and associated radio bursts have been well studied in cases where the CME originates close to the solar limb or within the frontside disc. Here, we study the radio emission associated with a CME eruption on the back side of the Sun on 22 July 2012. Methods. Using radio imaging from the Nançay Radioheliograph, spectroscopic data from the Nançay Decametric Array, and extreme-ultraviolet observations from the Solar Dynamics Observatory and Solar Terrestrial Relations Observatory spacecraft, we determine the nature of the observed radio emission as well as the location and propagation of the CME. Results. We show that the observed low-intensity radio emission corresponds to a type II radio burst or a short-duration type IV radio burst associated with a CME eruption due to breakout reconnection on the back side of the Sun, as suggested by the pre-eruptive magnetic field configuration. The radio emission consists of a large, extended structure, initially located ahead of the CME, that corresponds to various electron acceleration locations. Conclusions. The observations presented here are consistent with the breakout model of CME eruptions. The extended radio emission coincides with the location of the current sheet and quasi-separatrix boundary of the CME flux and the overlying helmet streamer and also with that of a large shock expected to form ahead of the CME in this configuration.
description: 7 pages, 5 figures
Additional file 1 of The use of specialised preterm birth clinics for women at high risk of spontaneous preterm birth: a systematic review
Creators: name: Dawes, Lisa
name: Groom, Katie
name: Jordan, Vanessa
name: Waugh, Jason
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Computational Biology

description: Additional file 1: Table S1. MEDLINE search strategy. Table S2. Methodological quality assessment of included studies based on the Newcastle-Ottawa Scale for cohort and case controlled studies. Table S3. Methodological quality assessment of included studies based on the modified Newcastle-Ottawa Scale for cross-sectional studies. Table S4. Methodological quality assessment of included studies based on the Cochrane Risk of Bias Tool for randomized controlled trials. Table S5. Methodological quality assessment of included qualitative studies based on the Critical Appraisal Skills Programme Checklist for qualitative research.