cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Genome-wide chromatin and gene expression profiling during memory formation and maintenance in adult mice. [Data Record 4: ChIP-seq]
Creators: name: Tonatiuh Pena Centeno
name: Orr Shomroni
name: Hennion, Magali
name: Vidal, Ramon
name: Raza-Ur Rahman
name: Fischer, Andre
name: Bonn, Stefan
Publisher: name: figshare
Year: 2016
Subjects: subject: Behavioral Neuroscience
subject: 60102 Bioinformatics
subject: FOS: Computer and information sciences

description: DESCRIPTION
Experiment type - Genome binding/occupancy profiling by high throughput sequencing
Design - Chromatin modification changes for seven different histone marks (H3, H3K27AC, H3K27ME3, H3K4ME1, H3K4ME3, H3K79ME3, H3K9AC) in two distinct mouse brain regions (CA1, ACC), two cell-types (NEU for neurons, NON for non-neurons) and three time-points (00H for naive, 01H for 1 hour, 04W for 4 weeks) before and after contextual learning (NAI for naive, CON for context, SHC for context shock).

DATA REPOSITORIES
EPIGENOME BROWSER (https://memory-epigenome-browser.dzne.de/)
Contains ChIP-seq data under category "CHIP-DATA". Sample names include conditioning, time-point, tissue, cell type and replicate number (1 or 2; samples without numbers are merged replicates) separated by dashes. bigWig files can also be downloaded for local visualisation.
Gene Expression Omnibus (GEO)
Data is available on GEO under the accession number GSE74964 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE74964), containing SRA and bigwig files to download for all 108 ChIP-seq samples.

DATA GENERATION
Alignment and visualisation data was generate using the pre-processing code found in Figshare (https://dx.doi.org/10.6084/m9.figshare.3153193).
Sequencing data
Creators: name: Tonatiuh Pena Centeno
Publisher: name: figshare
Year: 2016
Subjects: subject: Behavioral Neuroscience
subject: 60102 Bioinformatics
subject: FOS: Computer and information sciences

description: Links to ChIP-, MeDIP- and RNA-seq GEO repositories
Knowledge Graph Creation Challenge: Results for SDM-RDFizer
Creators: name: Iglesias, Enrique
name: Vidal, Maria-Esther
Publisher: name: Aachen, Germany : RWTH Aachen
Year: 2023
Subjects: subject: Data Integration System
subject: Knowledge Graph Creation
subject: RDF Mapping Languages
subject: Konferenzschrift
subject: Dewey Decimal Classification::000 | Allgemeines, Wissenschaft::000 | Informatik, Wissen, Systeme::004 | Informatik

description: The amount of data being generated in recent years has increased drastically. Thus, a unified schema must be defined to bring multiple data sources into a single format. For that reason, the use of knowledge graphs has become much more commonplace. When creating a knowledge graph, different parameters affect the creation process, like the size and heterogeneity of the input data and the complexity of the input mapping. Multiple knowledge graph creation engines have been developed that handle these parameters differently. Therefore, a benchmark is needed to be defined to evaluate the performance of these engines. KGCW 2023 Challenge dataset presents a wide array of test cases to discover each engine's strengths and weaknesses and determine which engine is best suited for each case. This work reports the results of evaluating the performance of SDM-RDFizer while using this dataset.
Bounded subgroups of relatively finitely presented groups
Creators: name: Schesler, Eduard
Publisher: name: arXiv
Year: 2022
Subjects: subject: Group Theory (math.GR)
subject: Metric Geometry (math.MG)
subject: FOS: Mathematics
subject: 20F67, 20F65

description: Given a finitely generated group $G$ that is relatively finitely presented with respect to a collection of peripheral subgroups, we prove that every infinite subgroup $H$ of $G$ that is bounded in the relative Cayley graph of $G$ is conjugate into a peripheral subgroup. As an application, we obtain a trichotomy for subgroups of relatively hyperbolic groups. Moreover we prove the existence of the relative exponential growth rate for all subgroups of limit groups.
description: 14 pages. Comments welcome!
ChIP-seq
Creators: name: Tonatiuh Pena Centeno
Publisher: name: figshare
Year: 2016
Subjects: subject: Behavioral Neuroscience
subject: 60102 Bioinformatics
subject: FOS: Computer and information sciences

description: Links to ChIP-, MeDIP- and RNA-seq GEO repositories
A Cross-Sectional Study of the Relationship Between Abomasal Displacement or Volvulus and Hypocalcemia in Dairy Cattle
Creators: name: Delgado-Lecaroz, R.
name: Warnick, L. D.
name: Guard, C. L.
name: Smith, M. C.
name: Barry, D. A.
Publisher: name: American Association of Bovine Practitioners  Proceedings of the Annual Conference
Year: 1998

description: The purpose of this study was to compare total serum calcium concentrations of cows diagnosed with abomasal displacement or volvulus with that of unaffected cows from the same herds.
description: American Association of Bovine Practitioners Proceedings of the Annual Conference, 1998
On the complexity of horn and krom fragments of second-order boolean logic
Creators: name: Hannula, Miika
name: Kontinen, Juha
name: Lück, Martin
name: Virtema, Jonni
Publisher: name: Saarbrücken/Wadern, Germany : Schloss Dagstuhl - Leibniz-Zentrum für Informatik GmbH, Dagstuhl Publishing
Year: 2021
Subjects: subject: Computational complexity
subject: Horn
subject: Krom fragment
subject: Quantified Boolean formulae
subject: Second-order logic
subject: Konferenzschrift
subject: Dewey Decimal Classification::000 | Allgemeines, Wissenschaft::000 | Informatik, Wissen, Systeme::004 | Informatik

description: Second-order Boolean logic is a generalization of QBF, whose constant alternation fragments are known to be complete for the levels of the exponential time hierarchy. We consider two types of restriction of this logic: 1) restrictions to term constructions, 2) restrictions to the form of the Boolean matrix. Of the first sort, we consider two kinds of restrictions: firstly, disallowing nested use of proper function variables, and secondly stipulating that each function variable must appear with a fixed sequence of arguments. Of the second sort, we consider Horn, Krom, and core fragments of the Boolean matrix. We classify the complexity of logics obtained by combining these two types of restrictions. We show that, in most cases, logics with k alternating blocks of function quantifiers are complete for the kth or (k − 1)th level of the exponential time hierarchy. Furthermore, we establish NL-completeness for the Krom and core fragments, when k = 1 and both restrictions of the first sort are in effect.
Effect of Nutrition, Lactation and Periparturient Complications on Adrenal, Pituitary and Ovarian Function and Uterine Involution in High-Producing Dairy Cows
Creators: name: Nakao, T.
name: Torres, E. B.
name: Moriyoshi, M.
name: Nakada, K.
name: Osawa, T.
name: Ohtaki, T.
name: Kawata, K.
Publisher: name: American Association of Bovine Practitioners  Proceedings of the Annual Conference
Year: 1998

description: Effects of body condition at parturition, purperal complications, milk yield and parity on the sequential changes in postpartum adrenocortical and pituitary functions , ovarian activity and uterine involution were investigated in 44 high-producing Holstein Friesian cows. One half of the cows had normal adrenocortical function and the other half had either enhanced or depressed adrenocortical function 8 days postpartum. The adrenocortical function was found to be normal in all cows 22 days after calving. Pituitary gland response to GnRH was low in 68.2 % of cows 7 days after parturition and 31.8 % still had low response 21 days postpartum. A significant negative correlation (P<0.05) was observed between basal and ACTH-stimulated plasma cortisol levels and GnRH-stimulated plasma luteinizing-hormone levels 7 to 8 days after calving. Multifactorial analysis of variance showed that postpartum adrenocortical function was enhanced by poor body condition at calving, high milk yield, and increased parity. In association with enhanced adrenocortical function, pituitary function tended to be depressed 7 days postpartum in cases of poor body condition, high milk yield and increased parity. Among all the various factors examined, milk yield had the most significant effect on postpartum adrenocortical and pituitary functions. Uterine involution tended to be delayed in cows with poor body condition at calving, high milk yield and increased parity. It may be concluded that undernutrition, high milk yield and increased parity are predominant factors causing enhancement of adrenocortical function which is associated with depression of pituitary function.
description: American Association of Bovine Practitioners Proceedings of the Annual Conference, 1998
Testability in group theory
Creators: name: Becker, Oren
name: Lubotzky, Alexander
name: Mosheiff, Jonathan
Publisher: name: arXiv
Year: 2022
Subjects: subject: Group Theory (math.GR)
subject: Data Structures and Algorithms (cs.DS)
subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: FOS: Computer and information sciences

description: This paper is a journal counterpart to our FOCS 2021 paper, in which we initiate the study of property testing problems concerning a finite system of relations $E$ between permutations, generalizing the study of stability in permutations. To every such system $E$, a group $Γ=Γ_E$ is associated and the testability of $E$ depends only on $Γ$ (just like in Galois theory, where the solvability of a polynomial is determined by the solvability of the associated group). This leads to the notion of testable groups, and, more generally, Benjamini-Schramm rigid groups. The paper presents an ensemble of tools to check if a given group $Γ$ is testable/BS-rigid or not.
description: 22 pages
Braided Thompson groups with and without quasimorphisms
Creators: name: Fournier-Facio, Francesco
name: Lodha, Yash
name: Zaremsky, Matthew C. B.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Group Theory (math.GR)
subject: Geometric Topology (math.GT)
subject: FOS: Mathematics

description: We study quasimorphisms and bounded cohomology of a variety of braided versions of Thompson groups. Our first main result is that the Brin--Dehornoy braided Thompson group $bV$ has an infinite-dimensional space of quasimorphisms and thus infinite-dimensional second bounded cohomology. This implies that despite being perfect, $bV$ is not uniformly perfect, in contrast to Thompson's group $V$. We also prove that relatives of $bV$ like the ribbon braided Thompson group $rV$ and the pure braided Thompson group $bF$ similarly have an infinite-dimensional space of quasimorphisms. Our second main result is that, in stark contrast, the close relative of $bV$ denoted $\hat{bV}$, which was introduced concurrently by Brin, has trivial second bounded cohomology. This makes $\hat{bV}$ the first example of a left-orderable group of type $\operatorname{F}_\infty$ that is not locally indicable and has trivial second bounded cohomology. This also makes $\hat{bV}$ an interesting example of a subgroup of the mapping class group of the plane minus a Cantor set that is non-amenable but has trivial second bounded cohomology, behaviour that cannot happen for finite-type mapping class groups.
description: v2: final version, to appear in Algebraic & Geometric Topology
Distribution Characteristics and Sampling Strategy Considerations for Plasma Non-Esterified Fatty Acid (NEPA) Testing in Late-Gestation Dairy Cows
Creators: name: Herdt, Thomas H.
name: Bartlett, Paul C.
Publisher: name: American Association of Bovine Practitioners  Proceedings of the Annual Conference
Year: 1998

description: Prepartum negative energy balance, as estimated by plasma NEFA concentration, is a demonstrated, positive risk factor for postpartum disease in dairy cows.1,2 Thus, determination of plasma NEFA concentration is potentially valuable for nutritional monitoring and disease risk assessment in late-gestation cows.
description: American Association of Bovine Practitioners Proceedings of the Annual Conference, 1998
2.ChIP-seq
Creators: name: Tonatiuh Pena Centeno
Publisher: name: figshare
Year: 2016
Subjects: subject: Behavioral Neuroscience
subject: 60102 Bioinformatics
subject: FOS: Computer and information sciences

description: Links to ChIP-, MeDIP- and RNA-seq GEO repositories
A topological construction of families of Galois covers of the line
Creators: name: Ghigi, Alessandro
name: Tamborini, Carolina
Publisher: name: arXiv
Year: 2022
Subjects: subject: Algebraic Geometry (math.AG)
subject: FOS: Mathematics

description: We describe a new construction of families of Galois coverings of the line using basic properties of configuration spaces, covering theory, and the Grauert-Remmert Extension Theorem. Our construction provides an alternative to a previous construction due to González-Díez and Harvey (which uses Teichmüller theory and Fuchsian groups) and, in the case the Galois group is non-abelian, corrects an inaccuracy therein.
description: Final version accepted for publication on Algebraic and Geometric Topology
Linear-Time Temporal Logic with Team Semantics: Expressivity and Complexity
Creators: name: Virtema, Jonni
name: Hofmann, Jana
name: Finkbeiner, Bernd
name: Kontinen, Juha
name: Yang, Fan
Publisher: name: Wadern : Schloss Dagstuhl - Leibniz-Zentrum für Informatik GmbH
Year: 2021
Subjects: subject: Expressivity
subject: Hyperproperties
subject: Linear temporal logic
subject: Model checking
subject: Konferenzschrift
subject: Dewey Decimal Classification::000 | Allgemeines, Wissenschaft::000 | Informatik, Wissen, Systeme::004 | Informatik

description: We study the expressivity and complexity of model checking of linear temporal logic with team semantics (TeamLTL). TeamLTL, despite being a purely modal logic, is capable of defining hyperproperties, i.e., properties which relate multiple execution traces. TeamLTL has been introduced quite recently and only few results are known regarding its expressivity and its model checking problem. We relate the expressivity of TeamLTL to logics for hyperproperties obtained by extending LTL with trace and propositional quantifiers (HyperLTL and HyperQPTL). By doing so, we obtain a number of model checking results for TeamLTL and identify its undecidability frontier. In particular, we show decidability of model checking of the so-called left-flat fragment of any downward closed TeamLTL-extension. Moreover, we establish that the model checking problem of TeamLTL with Boolean disjunction and inclusion atoms is undecidable.
Effects of dapagliflozin on blood pressure in hypertensive diabetic patients on renin–angiotensin system blockade
Creators: name: Weber, Michael A.
name: Mansfield, Traci A.
name: Alessi, Federica
name: Nayyar Iqbal
name: Shamik Parikh
name: Ptaszynska, Agata
Publisher: name: Taylor & Francis
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Hypertension and type 2 diabetes mellitus (T2DM) are risk factors for cardiovascular disease. Dapagliflozin improves glycemic control and systolic blood pressure (SBP) in T2DM patients. This double-blind phase III study evaluated the effects of dapagliflozin on glycemic control and blood pressure in patients with inadequately controlled T2DM and hypertension, despite ongoing therapy with a renin–angiotensin system blocker. Patients were randomized to receive dapagliflozin 10 mg (n = 302) or placebo (n = 311) once daily for 12 weeks. Endpoints were change from baseline to week 12 in seated SBP and glycosylated hemoglobin (HbA1c); longitudinal repeated-measures analysis was performed. Additional endpoints included other hemodynamic measures, serum uric acid, fasting plasma glucose, body weight, blood lipids and heart rate. After 12 weeks, dapagliflozin-treated versus placebo-treated patients showed significant reductions in HbA1c (–0.6% vs –0.1%, p p = 0.0010) and mean 24 h ambulatory SBP (–9.6 vs –6.7 mmHg, p = 0.0043). Dapagliflozin also reduced body weight compared with placebo (–1.0 vs –0.3 kg). Dapagliflozin was well tolerated, with adverse events consistent with previous studies. Dapagliflozin improved glycemic control, and reduced SBP as well as body weight in patients with poorly controlled T2DM and hypertension.
Methods of Evaluating Ruminal pH in Dairy Cattle
Creators: name: Oetzel, Garrett R.
name: Nordlund, Kenneth V.
Publisher: name: American Association of Bovine Practitioners  Proceedings of the Annual Conference
Year: 1998

description: Progress in understanding ruminal acidosis in dairy cattle has been limited by the methods available for determining ruminal pH. We evaluated three different methods of measuring ruminal pH in 8 ruminally-cannulated Holstein cows in early lactation as part of a 28-day nutritional study.
description: American Association of Bovine Practitioners Proceedings of the Annual Conference, 1998
Silentium! Run-Analyse-Eradicate the Noise out of the DB/OS Stack
Creators: name: Mauerer, Wolfgang
name: Ramsauer, Ralf
name: Edson, R. Lucas F.
name: Lohmann, Daniel
name: Scherzinger, Stefanie
Publisher: name: Bonn : Ges. für Informatik
Year: 2021
Subjects: subject: bounded-time query processing
subject: DB-OS co-engineering
subject: Low-latency databases
subject: real-time databases
subject: tail latency
subject: Konferenzschrift
subject: Dewey Decimal Classification::000 | Allgemeines, Wissenschaft::000 | Informatik, Wissen, Systeme::004 | Informatik

description: When multiple tenants compete for resources, database performance tends to suffer. Yet there are scenarios where guaranteed sub-millisecond latencies are crucial, such as in real-time data processing, IoT devices, or when operating in safety-critical environments. In this paper, we study how to make query latencies deterministic in the face of noise (whether caused by other tenants or unrelated operating system tasks). We perform controlled experiments with an in-memory database engine in a multi-tenant setting, where we successively eradicate noisy interference from within the system software stack, to the point where the engine runs close to bare-metal on the underlying hardware. We show that we can achieve query latencies comparable to the database engine running as the sole tenant, but without noticeably impacting the workload of competing tenants. We discuss these results in the context of ongoing efforts to build custom operating systems for database workloads, and point out that for certain use cases, the margin for improvement is rather narrow. In fact, for scenarios like ours, existing operating systems might just be good enough, provided that they are expertly configured. We then critically discuss these findings in the light of a broader family of database systems (e.g. including disk-based), and how to extend the approach of this paper accordingly.
The Effect of Fluid Volume Fed on the Serum Immunoglobulin in Calves
Creators: name: Adams, C. S.
name: Taugher, C. Y.
name: Jardon, P. W.
Publisher: name: American Association of Bovine Practitioners  Proceedings of the Annual Conference
Year: 1998

description: Serum immunoglobulin in calves is highly correlated with the mass of immunoglobulin in colostrum fed in the first 24 hours of life. The immunoglobulin concentration of colostrum can be estimated by determining its specific gravity, using a hydrometer. When the specific gravity of colostrum is undetermined, feeding 3. 78 L of colostrum reportedly results in an adequate serum immunoglobulin concentration in calves. The objective of this study was to compare the serum immunoglobulin in calves fed the same mass of immunoglobulin in two different volumes of fluid.
description: American Association of Bovine Practitioners Proceedings of the Annual Conference, 1998
(2) ChIP-seq
Creators: name: Tonatiuh Pena Centeno
Publisher: name: figshare
Year: 2016
Subjects: subject: Behavioral Neuroscience
subject: 60102 Bioinformatics
subject: FOS: Computer and information sciences

description: [Add description]
EPIGENOME BROWSER----------------------------------https://memory-epigenome-browser.dzne.de/

GEO accession: GSE74964-------------------------------------http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE74964
Delta-convex structure of the singular set of distance functions
Creators: name: Miura, Tatsuya
name: Tanaka, Minoru
Publisher: name: arXiv
Year: 2022
Subjects: subject: Analysis of PDEs (math.AP)
subject: Differential Geometry (math.DG)
subject: FOS: Mathematics
subject: 49J52, 53C22, 53C60, 49L25, 35F21

description: For the distance function from any closed subset of any complete Finsler manifold, we prove that the singular set is equal to a countable union of delta-convex hypersurfaces up to an exceptional set of codimension two. In addition, in dimension two, the whole singular set is equal to a countable union of delta-convex Jordan arcs up to isolated points. These results are new even in the standard Euclidean space and shown to be optimal in view of regularity.
description: 35 pages, 3 figures, final verson
Survey of polychlorinated dibenzo-p-dioxins, polychlorinated dibenzofurans and non-ortho-polychlorinated biphenyls in U.S. meat, poultry, and siluriform fish from 2018-2019: toxic equivalency levels, temporal trends, and implications
Creators: name: Lupton, Sara J.
name: Ochoa, Cristian
name: Domesle, Alexander
name: Duverna, Randolph
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Biochemistry
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Science Policy

description: The U.S. Department of Agriculture (USDA) conducted a survey of domestic animal products including beef fat, pork fat, chicken fat, turkey fat, dairy cow fat, and siluriform fish muscle (i.e. catfish) to determine the current residue levels of polychlorinated dibenzo-p-dioxins (PCDDs), polychlorinated dibenzofurans (PCDFs), and non-ortho-polychlorinated biphenyls (no-PCBs). The following types of fat samples were analysed: beef from heifers and steers (referred to as “beef”), pork, chicken, turkey, dairy cow (referred to as “dairy cow”), and siluriform fish muscle, which includes catfish. The survey is conducted every 5 years. Fat samples for each slaughter class and siluriform fillets were collected from U.S. federally inspected slaughter facilities, processed, and analysed for 17 PCDD/Fs and 3 no-PCBs. Toxic equivalency concentrations were calculated using 2005 toxic equivalency factors and summed (sum-TEQ) for all slaughter classes. The sum-TEQs ranged from non-detect (nd) to 16.5 pg TEQ/g lipid. The median sum-TEQs, when nd = ½ LOD, for beef, pork, chicken, turkey, dairy cow, and siluriform fish were 0.48, 0.08, 0.07, 0.21, 0.38, and 0.62 pg TEQ/g lipid (wet weight for siluriform fish), respectively. A comparison of the current and previous surveys typically depicts a significant declining trend depending on the slaughter class (such as chicken and turkey), however, beef and pork fat median values slightly increased and decreased, respectively, but neither were significant compared to the previous survey. The congener patterns for some high concentration beef and pork fat samples suggested that pentachlorophenol treated wood continues to be a likely on-farm dioxin exposure source.
Influence of Concentrate Feeding Frequency and Intrinsic Factors on Diurnal Variations of Blood Metabolites in Dairy Cows
Creators: name: Eicher, Richard
name: Liesegang, Annette
name: Bouchard, Emile
name: Tremblay, Armand
Publisher: name: American Association of Bovine Practitioners  Proceedings of the Annual Conference
Year: 1998

description: The purpose of this study was to determine the influence of the concentrate feeding frequency and some intrinsic factors on the diurnal variations of the blood metabolites glucose, β-hydroxybutyrate, urea nitrogen, non-esterified fatty acids, cholesterol and total protein in two herds with different concentrate feeding frequencies. These informations should yield knowledge for a better standardization of the sampling procedure when biochemical analyzes are to be used as diagnostic aids.
description: American Association of Bovine Practitioners Proceedings of the Annual Conference, 1998
Claw diseases
Creators: name: Bergsten, Christer
name: Hancock, Dale D.
name: Gay, John M.
name: Gay, Clive C.
name: Fox, Lawrence K.
Publisher: name: American Association of Bovine Practitioners  Proceedings of the Annual Conference
Year: 1998

description: The aim of the present study was to investigate the dynamics of digital lesions over time as observed at regular foot trimming of the herd and at treatment of acute individual lameness cases. The relationships between claw disease groups (e.g. infectious and laminitis related), cow risk factors, and the possible influence on the animals' performance were of special interest.
description: American Association of Bovine Practitioners Proceedings of the Annual Conference, 1998
[Data Record 2]: ChIP-seq
Creators: name: Tonatiuh Pena Centeno
Publisher: name: figshare
Year: 2016
Subjects: subject: Behavioral Neuroscience
subject: 60102 Bioinformatics
subject: FOS: Computer and information sciences

description: Genome-wide maps of chromatin changes upon contextual fear conditioning in mice (ChIP-seq)Experiment type - Genome binding/occupancy profiling by high throughput sequencing
Design - Chromatin modification changes for seven different histone marks (H3, H3K27AC, H3K27ME3, H3K4ME1, H3K4ME3, H3K79ME3, H3K9AC) in two distinct mouse brain regions (CA1, ACC), two cell-types (NEU for neurons, NON for non-neurons) and three time-points (00H for naive, 01H for 1h, 04W for 4w) before and after contextual learning (NAI for naive, CON for context, SHC for context shock).

EPIGENOME BROWSER (https://memory-epigenome-browser.dzne.de/)Contains ChIP-seq data under category "CHIP-DATA". Sample names include conditioning, time-point, tissue, cell type, histone mark and replicate number (1 or 2; samples without numbers are merged replicates) separated by dashes. bigWig files can also be downloaded for local visualisation.

GEO accession: GSE74964http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE74964
Combining Programming-by-Example with Transformation Discovery from large Databases
Creators: name: Özmen, Aslihan
name: Esmailoghli, Mahdi
name: Abedjan, Ziawasch
Publisher: name: Bonn : Ges. für Informatik
Year: 2021
Subjects: subject: Semantics
subject: Current system
subject: Data preparation
subject: Datum transformation
subject: Large corpora
subject: Konferenzschrift
subject: Dewey Decimal Classification::000 | Allgemeines, Wissenschaft::000 | Informatik, Wissen, Systeme::004 | Informatik

description: Data transformation discovery is one of the most tedious tasks in data preparation. In particular, the generation of transformation programs for semantic transformations is tricky because additional sources for look-up operations are necessary. Current systems for semantic transformation discovery face two major problems: either they follow a program synthesis approach that only scales to a small set of input tables, or they rely on extraction of transformation functions from large corpora, which requires the identification of exact transformations in those resources and is prone to noisy data. In this paper, we try to combine approaches to benefit from large corpora and the sophistication of program synthesis. To do so, we devise a retrieval and pruning strategy ensemble that extracts the most relevant tables for a given transformation task. The extracted resources can then be processed by a program synthesis engine to generate more accurate transformation results than state-of-the-art.
Factors Associated with Colostral Hydrometer Values
Creators: name: Maunsell, Fiona
name: Morin, Dawn
name: Constable, Peter
name: McCoy, Gene
Publisher: name: American Association of Bovine Practitioners  Proceedings of the Annual Conference
Year: 1998

description: The aims of this study were 1) to determine if unadjusted hydrometer readings were associated with breed, lactation number, or season of calving, and 2) to determine if the hydrometer readings were correlated with 305 day yields of milk, fat, or protein for the preceding or subsequent lactation, weight of first milking colostrum, or dry period length.
description: American Association of Bovine Practitioners Proceedings of the Annual Conference, 1998
Plastic cutting boards as a source of microplastics in meat
Creators: name: Habib, Rana Zeeshan
name: Poulose, Vijo
name: Alsaidi, Rana
name: al Kendi, Ruwaya
name: Iftikhar, Syed Haris
name: Mourad, Abdel-Hamid Ismail
name: Kittaneh, Wajeeh Fares
name: Thiemann, Thies
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Biophysics
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Plastic cutting boards were found to be the source of polythene microplastic contamination in cut meat commercially available at butchers and a supermarket chain in the Middle East, making them also a direct source of microplastic in wastewater. The mean size of the microplastic in the raw meat was 1279.2 ± 835.0 µm, but decreased when the meat was cooked or fried. The microplastic melted during both cooking and frying processes and recrystallised partially upon cooling. Washing the meat for a short time (10 seconds) before preparing it reduced the microplastic contamination insignificantly, and only extensive washing of the meat over longer periods of time (3 min) helped decrease the microplastic count to 0.07 MP/g meat. The composition of the cutting boards was analysed by FT-IR spectroscopy, differential scanning calorimetry and subjected to wear, tensile and hardness tests. From a 3D photo of a spent cutting board, it was calculatedthat 875 g polythene was lost from the cutting board at the end of its lifetime.
Evaluation of Specific Gravity as a Screening Test for Colostrum
Creators: name: Jardon, Phillip M.
name: Robison, Jon
name: Myake, Jacqueline
Publisher: name: American Association of Bovine Practitioners  Proceedings of the Annual Conference
Year: 1998

description: The objective of this study was to determine the usefulness of specific gravity (colostrometer) in the field evaluation of colostral quality. Colostrum samples (n=150) were collected during the summer of 1997 from 4 dairies in Fresno County, California. Information gathered on each sample at harvest included dam ID, lactation number, yield in kg, hours since calving, colostrometer reading, color, and subjective assessment of thickness. Samples were frozen for further analysis. A 250 ml sample was thawed and hydrometer readings taken to the nearest 0.0005 units at three different temperatures (0-1 °C in an ice bath, 20 °C in a constant temperature bath, and 37 °C ina constant temperature bath). Each sample was analyzed for IgG using VMRD, Inc SRID Kits.
description: American Association of Bovine Practitioners Proceedings of the Annual Conference, 1998
Assessment of dietary exposure to heterocyclic amines based on the Korean total diet study
Creators: name: Lee, Youngsun
name: Lee, Ki Soo
name: Kim, Cho-Il
name: Lee, Jee-Yeon
name: Kwon, Sung-Ok
name: Park, Hyun-Mee
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Science Policy

description: Heterocyclic amines (HCAs) are contaminants in proteinaceous foods produced by cooking at high temperatures. This study was the first assessment of exposure to HCAs using the Korean total diet study. Twelve HCAs were analysed in 1,232 pooled samples using six isotope-labelled internal standards and HPLC-MS/MS. The daily intake of HCAs in the Korean population was estimated based on the concentration of HCAs in the total diet study samples and individual food consumption data from the Korean National Health and Nutrition Examination Survey. Among HCAs, the intake of β-carbolines, such as harman and norharman, was the highest, followed by the intake of PhIP. The primary sources of HCA intake were meat, fish, shellfish, and beverages, including alcohol. The margin of exposure to PhIP was 2,349,000 at the average level and 373,000 at the 95th percentile in the Korean population. The estimated daily intake of all HCAs in the Korean population was considered safe.
Black-Scholes Option Pricing on Intel CPUs and GPUs: Implementation on SYCL and Optimization Techniques
Creators: name: Panova, Elena
name: Volokitin, Valentin
name: Gorshkov, Anton
name: Meyerov, Iosif
Publisher: name: arXiv
Year: 2022
Subjects: subject: Distributed, Parallel, and Cluster Computing (cs.DC)
subject: Mathematical Software (cs.MS)
subject: Performance (cs.PF)
subject: FOS: Computer and information sciences

description: The Black-Scholes option pricing problem is one of the widely used financial benchmarks. We explore the possibility of developing a high-performance portable code using the SYCL (Data Parallel C++) programming language. We start from a C++ code parallelized with OpenMP and show optimization techniques that are beneficial on modern Intel Xeon CPUs. Then, we port the code to SYCL and consider important optimization aspects on CPUs and GPUs (device-friendly memory access patterns, relevant data management, employing vector data types). We show that the developed SYCL code is only 10% inferior to the optimized C++ code when running on CPUs while achieving reasonable performance on Intel GPUs. We hope that our experience of developing and optimizing the code on SYCL can be useful to other researchers who plan to port their high-performance C++ codes to SYCL to get all the benefits of single-source programming.
description: 15 pages, 2 figures
КЛИНИКО-НЕВРОЛОГИЧЕСКИЕ И ДИАГНОСТИЧЕСКИЕ АСПЕКТЫ ГОЛОВНЫХ БОЛЕЙ ПРИ ВРОЖДЕННЫХ ПРЕЦЕРЕБРАЛЬНЫХ АНГИОДИСПЛАЗИЯХ
Creators: name: Рахматуллаева Г.К.           Alfraganus University
Publisher: name: Zenodo
Year: 2024

description: Головная боль – это симптом, сопровождающий различные заболевания, с различными причинными факторами, являющийся мульти дисциплинарной проблемой. Её регулярно испытывают почти 90% женщин и 70% мужчин, а для 20% из них она становится серьезной проблемой [1,2,3]. При этом, в опубликованных отчетах ВОЗ указано, что в Соединённом Королевстве Великобритании и Северной Ирландии из-за одной только мигрени ежегодно теряется около 25 млн. рабочих или учебных дней и 50% пациентов с ГБ занимаются самолечением. [4,8].В этой связи важно проведение анализа особенностей клинико-неврологического течения цефалгических синдромов, при врожденных аномалиях сосудов головного мозга.
The Effect of Lameness on Milk Production in Dairy Cattle
Creators: name: Warnick, L. D.
name: Guard, C. L.
name: Gröhn, Y. T.
Publisher: name: American Association of Bovine Practitioners  Proceedings of the Annual Conference
Year: 1998

description: Decisions regarding the economic value of preventing and treating lameness in dairy cattle require accurate estimates of costs of lameness.
description: American Association of Bovine Practitioners Proceedings of the Annual Conference, 1998
Genome-wide chromatin and gene expression profiling during memory formation and maintenance in adult mice. [Data Record 2: ChIP-seq]
Creators: name: Tonatiuh Pena Centeno
name: Orr Shomroni
name: Hennion, Magali
name: Vidal, Ramon
name: Raza-Ur Rahman
name: Fischer, Andre
name: Bonn, Stefan
Publisher: name: figshare
Year: 2016
Subjects: subject: Behavioral Neuroscience
subject: 60102 Bioinformatics
subject: FOS: Computer and information sciences

description: DESCRIPTION
Experiment type - Genome binding/occupancy profiling by high throughput sequencing
Design - Chromatin modification changes for seven different histone marks (H3, H3K27AC, H3K27ME3, H3K4ME1, H3K4ME3, H3K79ME3, H3K9AC) in two distinct mouse brain regions (CA1, ACC), two cell-types (NEU for neurons, NON for non-neurons) and three time-points (00H for naive, 01H for 1 hour, 04W for 4 weeks) before and after contextual learning (NAI for naive, CON for context, SHC for context shock).

DATA REPOSITORIES
EPIGENOME BROWSER (https://memory-epigenome-browser.dzne.de/)
Contains ChIP-seq data under category "CHIP-DATA". Sample names include conditioning, time-point, tissue, cell type and replicate number (1 or 2; samples without numbers are merged replicates) separated by dashes. bigWig files can also be downloaded for local visualisation.
Gene Expression Omnibus (GEO)
Data is available on GEO under the accession number GSE74964 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE74964), containing SRA and bigwig files to download for all 108 ChIP-seq samples.

DATA GENERATION
Alignment and visualisation data was generate using the pre-processing code found in Figshare (https://dx.doi.org/10.6084/m9.figshare.3153193).
Lacon querceus Portugal-Espana
Creators: name: Zapata, José Luis
name: Sánchez-Ruiz, Antonio
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Elateridae
Lacon
Lacon querceus

description: Lacon querceus (Herbst, 1784)
 Distribución; Alemania, Austria, Bulgaria, Chequia, Eslovaquia, España, Francia, Gran Bretaña, Grecia, Hungría, Italia, Lituania, Polonia, Rumanía, Rusia, Suecia, Suiza, Ucrania.
 Nota; En la distribución dada por Zapata y Sánchez-Ruiz (2012), se incluía Bélgica (Jeuniaux, 1996) y Letonia (Telnov, 2004). Dado que en ambos casos los autores refieren citas antiguas, se eliminan hasta que nuevas capturas confirmen su presencia. Se elimina igualmente Eslovenia, listada por error.
description: Published as part of Zapata, José Luis & Sánchez-Ruiz, Antonio, 2014, Nuevas aportaciones al catálogo de la familia Elateridae (Coleoptera) en la Península Ibérica e Islas Baleares, II., pp. 129-166 in Arquivos Entomolóxicos 10 on page 130, DOI: 10.5281/zenodo.12713966
Effect of Transition Ration Energy and Fiber Levels on Subclinical Laminitis and Ruminal Acidosis in Holsteins Cows in Florida
Creators: name: DeChant, G. M.
name: Risco, C. A.
name: Donovan, G. A.
name: Tran, T. Q.
name: Van Horn, H. H.
name: Bray, D. R.
Publisher: name: American Association of Bovine Practitioners  Proceedings of the Annual Conference
Year: 1998

description: Subclinical laminitis (SL) has been identified to be a common problem in high producing dairy cows. The condition is characterized by solar hemorrhages in its early stages and a predisposition for sole ulcers and subsolar abscesses. Environmental as well as nutritional factors have been suggested as the most important causative agents in SL. Early postpartum cows undergoing acclimation from late dry to early lactating rations are thought to be the most susceptible to nutritional causes of subclinical laminitis due to repeated episodes of ruminal acidosis during this acclimation period. This research focused upon energy and fiber levels in pre- and postpartum (transition) rations to determine if various combinations of these nutrients would influence the subsequent rate of solar hemorrhages and ruminal acidosis in early lactating cows.
description: American Association of Bovine Practitioners Proceedings of the Annual Conference, 1998
The protective role of selenium against uptake and accumulation of cadmium and lead in white oyster (Pleurotus ostreatus) and pink oyster (Pleurotus djamor) mushrooms
Creators: name: de Oliveira, Aline Pereira
name: Naozuka, Juliana
name: Landero-Figueroa, Julio Alberto
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Cancer

description: Mushrooms are bioaccumulators and have been used to produce Se-enriched foods. However, these fungi can also bioaccumulate potentially toxic metals, producing food dangerous to human health. It is known that co-exposure to Se plays a protective role against metal accumulation and toxicity in some organisms due to its antioxidant properties. Thus, this study aimed to evaluate the protective effect of Se(IV) and Se(VI) on elemental uptake and accumulation as well as proteins and protein-bound Se, Cd, and Pb distribution in Pleurotus mushrooms. Pink oyster and white oyster mushrooms showed high ability to bioaccumulate Se (19–205 µg g−1), Cd (4.5 to 18.8 µg g−1), and Pb (1.6 to 7.0 µg g−1). Growth substrate supplementation with Se(IV) or Se(VI) decreased the Cd total concentration in mushrooms by 4 to 89%, while Se(VI) increased the Pb total concentration by 9% to 187%, compared to growth in absence of Se. It was found that despite molecular weights distributions of mushrooms grown on Se(IV) and Se(VI)-supplemented substrates being similar, Se(VI) supplementation favoured Se interaction with proteins of medium molecular weight (17–44 kDa), when compared to supplementation with Se(IV). Therefore, we propose the supplementation of growth substrates with Se(VI) to reduce eventual Cd accumulation and produce Se-enriched oyster mushrooms.
High-Fidelity, Low-Loss State Detection of Alkali-Metal Atoms in Optical Tweezer Traps
Creators: name: Chow, Matthew N. H.
name: Little, Bethany J.
name: Jau, Yuan-Yu
Publisher: name: arXiv
Year: 2022
Subjects: subject: Quantum Physics (quant-ph)
subject: Atomic Physics (physics.atom-ph)
subject: FOS: Physical sciences

description: We demonstrate discrimination of ground-state hyperfine manifolds of a cesium atom in an optical tweezer using a simple probe beam with 99.91(2)% detection fidelity and 0.9(2)% detection-driven loss of bright state atoms. Our detection infidelity of 0.09(2)% is an order of magnitude better than previously published low-loss readout results for alkali-metal atoms in optical tweezers. Our low atom loss and high-fidelity state detection eliminates the extra depumping mechanism due to population transfer between excited-state sublevels through V-type stimulated Raman transitions caused by the trap laser when the probe laser is present. In this work, complex optical systems and stringent vacuum pressures are not required.
Prospective Preference Enhanced Mixed Attentive Model for Session-based Recommendation
Creators: name: Peng, Bo
name: Tai, Chang-Yu
name: Parthasarathy, Srinivasan
name: Ning, Xia
Publisher: name: arXiv
Year: 2022
Subjects: subject: Information Retrieval (cs.IR)
subject: FOS: Computer and information sciences

description: Session-based recommendation aims to generate recommendations for the next item of users' interest based on a given session. In this manuscript, we develop prospective preference enhanced mixed attentive model (P2MAM) to generate session-based recommendations using two important factors: temporal patterns and estimates of users' prospective preferences. Unlike existing methods, P2MAM models the temporal patterns using a light-weight while effective position-sensitive attention mechanism. In P2MAM, we also leverage the estimate of users' prospective preferences to signify important items, and generate better recommendations. Our experimental results demonstrate that P2MAM models significantly outperform the state-of-the-art methods in six benchmark datasets, with an improvement as much as 19.2%. In addition, our run-time performance comparison demonstrates that during testing, P2MAM models are much more efficient than the best baseline method, with a significant average speedup of 47.7 folds.
description: Under review by IEEE Transactions on Knowledge and Data Engineering (TKDE)
Comparison of human choriogonadotropin (HCG) and gonadotropin releasing hormone (GnRH) using a synchronized ovulation program for timed breeding
Creators: name: Goodell, G.
name: Geary, T.
name: Stevens, R.
Publisher: name: American Association of Bovine Practitioners  Proceedings of the Annual Conference
Year: 1998

description: As dairies continue to grow in size so must the means of efficient and cost-effective management. In the area of reproduction, the Ovsync program was developed by Pursley, et al. in order to improve pregnancy rates in cattle without the labor cost of heat detection.1 The protocol involves the use of prostaglandin and gonadatropin releasing hormone (GnRH) at specific time intervals to induce ovulation, allowing for a timed breeding.2 While these methods have proven relatively successful, the cost of such a program has been prohibitive. The use of human choriogonadotropin (HCG) in place of GnRH in the Ovsync protocol has been hypothesized to deliver similar results.
description: American Association of Bovine Practitioners Proceedings of the Annual Conference, 1998
Some Compound Fractional Poisson Processes
Creators: name: Khandakar, M.
name: Kataria, K. K.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Probability (math.PR)
subject: FOS: Mathematics
subject: 60G22, 60G51

description: In this paper, we introduce and study fractional versions of three compound Poisson processes, namely, the Bell-Touchard process, the Poisson-logarithmic process and the generalized Pólya-Aeppli process. It is shown that these processes are limiting cases of a recently introduced process by Di Crescenzo et al. (2016), namely, the generalized counting process. We obtain the mean, variance, covariance, long-range dependence property etc. for these processes. Also, we obtain several equivalent forms of the one-dimensional distribution of fractional versions of these processes.
The influence of heart failure co-morbidity on high-sensitivity troponin T levels in COPD exacerbation in a prospective cohort study: data from the Akershus cardiac examination (ACE) 2 study
Creators: name: Høiseth, Arne Didrik
name: Brynildsen, Jon
name: Tor-Arne Hagve
name: Christensen, Geir
name: Søyseth, Vidar
name: Omland Torbjørn
name: Røsjø, Helge
Publisher: name: Taylor & Francis
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Context: Troponin (hs-TnT) levels predict mortality after acute exacerbation of COPD (AECOPD). Whether this is independent of heart failure (HF) is not established. Material and methods: Prospectively included AECOPD patients adjudicated for acute HF categorized into three groups: (A) AECOPD, but acute HF the primary cause for hospitalization; (B) AECOPD the primary cause, but co-existing myocardial dysfunction and (C) AECOPD without myocardial dysfunction. Results: About 103 AECOPD patients; 18% A, 27% B and 54% C. Hs-TnT level differed between the groups: (ng/l, median) A: 41, B: 25 and C: 15, p = 0.03 for A versus B and p = 0.005 for B versus C. During a median 826 days, 47% died. In Cox analysis, hs-TnT levels remained associated with mortality (hazard ratio per 10 ng/l 1.3, p Conclusion: hs-TnT levels are influenced by myocardial dysfunction/HF in AECOPD, but provide independent prognostic information. The prognostic merit of hs-TnT cannot be attributed to HF alone.