cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Measurement of the $D^*(2010)^+ - D^+$ mass difference
Creators: name: The BaBar Collaboration
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: We measure the mass difference, $Δm_+$, between the $D^{*}(2010)^+$ and the $D^+$ using the decay chain $D^{*}(2010)^+\to D^+ π^0$ with $D^+\to K^-π^+π^+$. The data were recorded with the BABAR detector at center-of-mass energies at and near the $Υ(4S)$ resonance, and correspond to an integrated luminosity of approximately 468 ${\rm fb}^{-1}$. We measure $Δm_+ = \left(140\,601.0 \pm 6.8[{\rm stat}] \pm 12.9[{\rm syst}]\right)$ keV. We combine this result with a previous BABAR measurement of $Δm_0\equiv m(D^{*}(2010)^+) - m (D^0)$ to obtain $Δm_D = m(D^+) - m(D^0) = \left(4\,824.9 \pm 6.8[{\rm stat}] \pm 12.9[{\rm syst}]\right)$ keV. These results are compatible with and approximately five times more precise than the Particle Data Group averages.
description: 7 pages, 3 figures, submitted to Physical Review Letters
Additional file 3: of Measuring multiple parameters of CD8+ tumor-infiltrating lymphocytes in human cancers by image analysis
Creators: name: Steele, Keith
name: Tze Tan
name: RenĂŠ Korn
name: Dacosta, Karma
name: Brown, Charles
name: Kuziora, Michael
name: Zimmermann, Johannes
name: Laffin, Brian
name: Widmaier, Moritz
name: Rognoni, Lorenz
name: Cardenes, Ruben
name: Schneider, Katrin
name: Anmarie Boutrin
name: Martin, Philip
name: Jiping Zha
name: Wiestler, Tobias
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Figure S1 IA classification of CD8+ lymphocytes. Figure S2 IA classification of elongate CD8+ lymphocytes. Figure S3 Elongate CD8+ TILS detected by IA are also CD3+. Figure S4 Tumor landscape of elongate CD8+ TILs. (DOCX 1795Â kb)
Period-doubling in period-$1$ steady states
Creators: name: Wang, Reuben R. W.
name: Xing, Bo
name: Carlo, Gabriel G.
name: Poletti, Dario
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: Quantum Gases (cond-mat.quant-gas)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Nonlinear classical dissipative systems present a rich phenomenology in their "route to chaos", including period-doubling, i.e. the system evolves with a period which is twice that of the driving. However, typically the attractor of a periodically driven quantum open system evolves with a period which exactly matches that of the driving. Here we analyze a manybody open quantum system whose classical correspondent presents period-doubling. We show that by analysing the spectrum of the periodic propagator and by studying the dynamical correlations, it is possible to show the occurrence of period-doubling in the quantum (period-$1$) steady state. We also discuss that such systems are natural candidates for clean Floquet time crystals.
description: 5 pages, 4 figures
Science Outreach Project. Divulgacion. SharingSciTech. Publication 7: “How much does a (nice or perverse) idea weight? Measuring the mind.”
Creators: name: Ruiz-Marquez, Eloisa
Publisher: name: OSF
Year: 2023
Subjects: basic science
cognition
cognitive sciences
divulgacion
neurociencia
neurosciences
psicología
psychology
research
science outreach
technology
tecnología

description: ...Cognitive functions such as memory or attention cannot be seen or touched directly. They are named: theoretical constructs...https://eloisasharingscitech.wordpress.com/2021/03/22/how-much-does-an-idea-nice-or-perverse-weight-osin-nt-0104-7298/
MOESM2 of Reproducible proteomics sample preparation for single FFPE tissue slices using acid-labile surfactant and direct trypsinization
Creators: name: FĂśll, Melanie
name: Fahrner, Matthias
name: Oria, Victor
name: KĂźhs, Markus
name: Biniossek, Martin
name: Werner, Martin
name: Bronsert, Peter
name: Schilling, Oliver
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences

description: Additional file 2. Shared peptides between replicates and peptide amounts. (A) Peptide overlap between replicates. (B) Peptide amounts measured by BCA assay after tryptic digestion.
The Security Assessment Domain: A Survey of Taxonomies and Ontologies
Creators: name: Rosa, Ferrucio de Franco
name: Bonacin, Rodrigo
name: Jino, Mario
Publisher: name: arXiv
Year: 2017
Subjects: subject: Software Engineering (cs.SE)
subject: FOS: Computer and information sciences

description: The use of ontologies and taxonomies contributes by providing means to define concepts, minimize the ambiguity, improve the interoperability and manage knowledge of the security domain. Thus, this paper presents a literature survey on ontologies and taxonomies concerning the Security Assessment domain. We carried out it to uncover initiatives that aim at formalizing concepts from the Information Security and Test and Assessment fields of research. We applied a systematic review approach in seven scientific databases. 138 papers were identified and divided into categories according to their main contributions, namely: Ontology, Taxonomy and Survey. Based on their contents, we selected 47 papers on ontologies, 22 papers on taxonomies, and 11 papers on surveys. A taxonomy has been devised to be used in the evaluation of the papers. Summaries, tables, and a preliminary analysis of the selected works are presented. Our main contributions are: 1) an updated literature review, describing key characteristics, results, research issues, and application domains of the papers; and 2) the taxonomy for the evaluation process. We have also detected gaps in the Security Assessment literature that could be the subject of further studies in the field. This work is meant to be useful for security researchers who wish to adopt a formal approach in their methods and techniques.
Extension of the Planar Noh Problem to Aluminum, Iron, Copper, and Tungsten
Creators: name: Yorke, Chloe E.
name: Howard, April D.
name: Burnett, Sarah C.
name: Honnell, Kevin G.
name: Ramsey, Scott D.
name: Singleton, Robert L.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: The classic Noh verification test problem is extended beyond the traditional ideal gas and applied to shock compression of condensed matter. Using the stiff-gas equation of state (EOS), which admits an exact analytical solution for the planar Noh problem, we examine the shock compression of Al, Fe, Cu, and W. Analytical EOS predictions for the jump in density and the location of the shock are compared to numerical results obtained using the same EOS within Los Alamos compressible-flow codes Flag and xRage. Excellent agreement between the numerical and exact results is observed. Both codes exhibit first-order spatial convergence with increasing mesh resolution.
description: 5 pages, 7 figures, APS Shock Compression of Condensed Matter Conference
Additional file 2: of Measuring multiple parameters of CD8+ tumor-infiltrating lymphocytes in human cancers by image analysis
Creators: name: Steele, Keith
name: Tze Tan
name: RenĂŠ Korn
name: Dacosta, Karma
name: Brown, Charles
name: Kuziora, Michael
name: Zimmermann, Johannes
name: Laffin, Brian
name: Widmaier, Moritz
name: Rognoni, Lorenz
name: Cardenes, Ruben
name: Schneider, Katrin
name: Anmarie Boutrin
name: Martin, Philip
name: Jiping Zha
name: Wiestler, Tobias
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer

description: CD8/PD-L1 dual IHC, quality control; co-registration; details of the automated classification assessment; details of digital IA scoring solutions; measurement of CD8+ TILs in PD-L1â positive tumor. (DOCX 45Â kb)
Anomaly Detection by Robust Statistics
Creators: name: Rousseeuw, Peter J.
name: Hubert, Mia
Publisher: name: arXiv
Year: 2017
Subjects: subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: Real data often contain anomalous cases, also known as outliers. These may spoil the resulting analysis but they may also contain valuable information. In either case, the ability to detect such anomalies is essential. A useful tool for this purpose is robust statistics, which aims to detect the outliers by first fitting the majority of the data and then flagging data points that deviate from it. We present an overview of several robust methods and the resulting graphical outlier detection tools. We discuss robust procedures for univariate, low-dimensional, and high-dimensional data, such as estimating location and scatter, linear regression, principal component analysis, classification, clustering, and functional data analysis. Also the challenging new topic of cellwise outliers is introduced.
description: To appear in WIREs Data Mining and Knowledge Discovery
Additional file 2 of Dynamic serum biomarkers to predict the efficacy of PD-1 in patients with nasopharyngeal carcinoma
Creators: name: Zhang, Ao
name: Zhong, Guanqing
name: Wang, Luocan
name: Cai, Rongzeng
name: Han, Runkun
name: Xu, Caixia
name: Chen, Shulin
name: Sun, Peng
name: Chen, Hao
Publisher: name: figshare
Year: 2021
Subjects: Medicine
Cell Biology
Biotechnology
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Mathematical Sciences not elsewhere classified
Cancer

description: Additional file 2: Table S1. Test items, test methods, and instrument of serum markers.
Additional file 1 of Temporal trend of comorbidity and increasing impacts on mortality, length of stay, and hospital costs of first stroke in Tianjin, North of China
Creators: name: Hao, Ruixiao
name: Qi, Xuemei
name: Xia, Xiaoshuang
name: Wang, Lin
name: Li, Xin
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Neuroscience
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 1: Table S1. Trends among age, sex, comorbidity of first-stroke population and calendar years. Table S2. Cox Regression Analysis of In-hospital Death-Related Risk Factors in First-time Stroke Patients. Table S3. Cox Regression Analysis of 7-day Death-Related Risk Factors in First-time Stroke Patients. Table S4. Comparison of In-hospital Mortality Risks Between Patients Admitted for First Stroke with Different Comorbidity Categories Using Age-stratified Analysis. Table S5. Comparison of In-hospital Mortality Risks Between Patients Admitted for First Stroke with Different Comorbidity Categories Using Season-stratified Analysis. Table S6. 7-day Mortality Rate Ratio Associated with Individual Comorbidities After First Time Hospitalization for Stroke. Figure S1. Figure shows comorbidity trends of first-stroke population and calendar years (a); figure shows age trends of first-stroke population and calendar years (b). Figure S2. Kaplan–Meier survival curves for in-hospital mortality (a) and 7-day mortality (b).
Merging the Bernoulli-Gaussian and Symmetric Alpha-Stable Models for Impulsive Noises in Narrowband Power Line Channels
Creators: name: Han, Bin
name: Lu, Yang
name: Wan, Kai
name: Schotten, Hans D.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Signal Processing (eess.SP)
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: To model impulsive noise in power line channels, both the Bernoulli-Gaussian model and the symmetric alpha-stable model are usually applied. Towards a merge of existing noise measurement databases and a simplification of communication system design, the compatibility between the two models is of interest. In this paper, we show that they can be approximately converted to each other under certain constrains, although never generally unified. Based on this, we propose a fast model conversion.
description: Accepted by Physical Communication on 08. Jan. 2019
Femtoscopy of stopped protons
Creators: name: Bialas, Andrzej
name: Bzdak, Adam
name: Koch, Volker
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: Nuclear Experiment (nucl-ex)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: The longitudinal proton-proton femtoscopy (HBT) correlation function, based on the idea that in a heavy ion collision at $\sqrt{s} \lesssim 20$ GeV stopped protons are likely to be separated in configuration space, is evaluated. It shows a characteristic oscillation which appears sufficiently pronounced to be accessible in experiment. The proposed measurement is essential for estimating the baryon density in the central rapidity region, and can be also viewed as an (almost) direct verification of the Lorentz contraction of the fast-moving nucleus.
description: 8 pages, 3 figures; discussion on strong and Coulomb interactions included
MOESM1 of Reproducible proteomics sample preparation for single FFPE tissue slices using acid-labile surfactant and direct trypsinization
Creators: name: FĂśll, Melanie
name: Fahrner, Matthias
name: Oria, Victor
name: KĂźhs, Markus
name: Biniossek, Martin
name: Werner, Martin
name: Bronsert, Peter
name: Schilling, Oliver
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. Shared proteins between the replicates and peptide numbers per protein. (A) Overlap between identified proteins. (B) Frequency of shared proteins between the replicates. (C) Average peptide numbers for each protocol and proteins depending on their appearance in multiple replicates.
Possible spin gapless semiconductor type behaviour in CoFeMnSi epitaxial thin films
Creators: name: Kushwaha, Varun K.
name: Rani, Jyoti
name: Tulapurkar, Ashwin
name: Tomy, C. V.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Spin-gapless semiconductors with their unique band structures have recently attracted much attention due to their interesting transport properties that can be utilized in spintronics applications. We have successfully deposited the thin films of quaternary spin-gapless semiconductor CoFeMnSi Heusler alloy on MgO (001) substrates using a pulsed laser deposition system. These films show epitaxial growth along (001) direction and display uniform and smooth crystalline surface. The magnetic properties reveal that the film is ferromagnetically soft along the in-plane direction and its Curie temperature is well above 400 K. The electrical conductivity of the film is low and exhibits a nearly temperature independent semiconducting behaviour. The estimated temperature coefficient of resistivity for the film is -7x10^-10 Ohm.m/K, which is comparable to the values reported for spin-gapless semiconductors.
description: CoFeMnSi, Thin films, Epitaxy, Heusler alloys, Spintronics, Spin-gapless semiconductor, Electrical conductivity, Band Structure, 5 pages, 4 figures
Statehood in Pre-Colonial Africa
Creators: name: Mayinje, Qhayiya
Publisher: name: figshare
Year: 2022
Subjects: subject: 160699 Political Science not elsewhere classified
subject: FOS: Political science
subject: 160609 Political Theory and Political Philosophy
subject: 160603 Comparative Government and Politics
subject: 160606 Government and Politics of Asia and the Pacific
subject: 160512 Social Policy
subject: 160510 Public Policy
subject: 160514 Urban Policy

description: An elaborate write-up on the existence of statehood in the pre-colonial era of Africa.
Suzaku Observations of the Outskirts of the Galaxy Cluster Abell 3395 including a Filament toward Abell 3391
Creators: name: Sugawara, Yuuki
name: Takizawa, Motokazu
name: Itahana, Madoka
name: Akamatsu, Hiroki
name: Fujita, Yutaka
name: Ohashi, Takaya
name: Ishisaki, Yoshitaka
Publisher: name: arXiv
Year: 2017
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: The results of Suzaku observations of the outskirts of Abell 3395 including a large-scale structure filament toward Abell 3391 are presented. We measured temperature and abundance distributions from the southern outskirt of Abell 3395 to the north at the virial radius, where a filament structure has been found in the former X-ray and Sunyaev-Zel'dovich effect observations between Abell 3391 and 3395. The overall temperature structure is consistent with the universal profile proposed by Okabe et al.(2014) for relaxed clusters except for the filament region. A hint of the ICM heating is found between the two clusters, which might be due to the interaction of them in the early phase of a cluster merger. Although we obtained relatively low metal abundance of $Z=0.169^{+0.164+0.009+0.018 }_{-0.150-0.004-0.015 }$ solar, where the first, second, and third errors are statistical, cosmic X-ray background systematic, and non X-ray background systematic, respectively, at the virial radius in the filament, our results are still consistent with the former results of other clusters ($Z \sim 0.3$ solar) within errors. Therefore, our results are also consistent with the early enrichment scenario. We estimated Compton $y$ parameters only from X-ray results in the region between Abell 3391 and 3395 assuming a simple geometry. They are smaller than the previous SZ results with Planck satellite. The difference could be attributed to a more elaborate geometry such as a filament inclined to the line-of-sight direction, or underestimation of the X-ray temperature because of the unresolved multi-temperature structures or undetected hot X-ray emission of the shock heated gas.
description: 11 pages, 9 figures, accepted for publication in PASJ
Additional file 1: of A program to respond to otitis media in remote Australian Aboriginal communities: a qualitative investigation of parent perspectives
Creators: name: Jones, Caroline
name: Sharma, Mridula
name: Harkus, Samantha
name: McMahon, Catherine
name: Mele Taumoepeau
name: Demuth, Katherine
name: Mattock, Karen
name: Rosas, Lee
name: Wing, Raelene
name: Sulabha Pawar
name: Hampshire, Anne
Publisher: name: figshare
Year: 2018
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Interview schedule.This contains the full set of questions asked in the interview. For questions with other than an open response, it also contains the response options from which the participant chose. (DOCX 119 kb)
Anisotropies of Ultra-high Energy Cosmic Rays Dominated by a Single Source in the Presence of Deflections
Creators: name: Dundović, Andrej
name: Sigl, Günter
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: This work presents a scenario of ultra-high energy cosmic ray source distribution where a nearby source is solely responsible for the anisotropies in arrival directions of cosmic rays while the rest of the sources contribute only isotropically. An analytical approach focused on large-scale anisotropies, which are influenced by deflections in a Kolmogorov-type turbulent magnetic field, is employed to provide more general results. When the recent Pierre Auger Observatory angular power spectrum above 8 EeV is used the restricted model gives, under the assumption of the small angle approximation, a solution where the RMS deflection with respect to the line of sight is $α_{\rm rms} = \left(50^{+11}_{-10}\right)^\circ$, while the relative flux from the single source $η=0.03\pm 0.01$. Furthermore, the solution can be translated into constraints on the source distance, luminosity, and extra-galactic magnetic field strength. For Centaurus A and the Virgo cluster the required relation between the coherence length and the RMS magnetic field strength is obtained: a coherence length of $~\sim 100\,\mathrm{kpc}$ would imply the RMS field strength around $1\,\mathrm{nG}$ for iron dominated and above $10\,\mathrm{nG}$ for proton dominated composition. We also performed trajectory simulations with our publicly available code CRPropa to show that our analytical model can serve as a good approximation as long as the deflections in cosmic magnetic fields can be described as a random walk. The simulations showed that generally structured fields tend to suppress large-scale anisotropies, especially the dipole, compared to anisotropies at smaller scales described by higher multipoles.
description: 27 pages, 15 figures
Additional file 1 of Bidirectional association between asthma and otitis media in children
Creators: name: Kim, So Young
name: Kim, Hye-Rim
name: Min, Chanyang
name: Choi, Hyo Geun
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. File S1. Description: study population and data collection.
Numerical assessment of two-level domain decomposition preconditioners for incompressible Stokes and elasticity equations
Creators: name: Barrenechea, Gabriel R.
name: Bosy, Michał
name: Dolean, Victorita
Publisher: name: arXiv
Year: 2017
Subjects: subject: Numerical Analysis (math.NA)
subject: Computational Engineering, Finance, and Science (cs.CE)
subject: FOS: Mathematics
subject: FOS: Computer and information sciences

description: Solving the linear elasticity and Stokes equations by an optimal domain decomposition method derived algebraically involves the use of non standard interface conditions. The one-level domain decomposition preconditioners are based on the solution of local problems. This has the undesired consequence that the results are not scalable, it means that the number of iterations needed to reach convergence increases with the number of subdomains. This is the reason why in this work we introduce, and test numerically, two-level preconditioners. Such preconditioners use a coarse space in their construction. We consider the nearly incompressible elasticity problems and Stokes equations, and discretise them by using two finite element methods, namely, the hybrid discontinuous Galerkin and Taylor-Hood discretisations.
Hydrodynamic model of the collective electron resonances in C60 fullerene
Creators: name: Gildenburg, V. B.
name: Pavlichenko, I. A.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: The polarization-response spectrum of the fullerene C60 modeled as a homogeneous spherical plasma shell is calculated in the framework of the hydrodynamic approach allowing for the spatial dispersion caused by the Fermi-distributed valence electrons. The dipole eigenoscillations spectrum of the shell is found to contain a series of plasmons distinguished by the frequency and the radial structure. The first two of them (whose structures for C60 is the subject of discussion up to now) pass to the lower and higher surface plasmons of the plasma shell if its thickness is much larger than Tomas-Fermi length. However, under parameters values corresponding to the C60 molecule, when these lengths are of the same order, both these plasmons (providing the main contribution to the fullerene absorption spectrum) are found to be actually volume ones in their spatial structure, and the frequency of the higher of them becomes larger than the plasma frequency (as with all the higher volume plasmons). The resonance curve of the fullerene absorption cross-section calculated on the basis of the developed model with allowance for the surface losses caused by the reflection of electrons at the shell boundaries agrees satisfactory with the experimental data.
description: 12 pages, 5 figures
Additional file 2 of Bidirectional association between asthma and otitis media in children
Creators: name: Kim, So Young
name: Kim, Hye-Rim
name: Min, Chanyang
name: Choi, Hyo Geun
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2. Table S2. General characteristics of participants.
Light propagation in quasiperiodic dieletric multilayers separated by graphene
Creators: name: Costa, Carlos H.
name: Pereira, Luiz F. C.
name: Bezerra, Claudionor G.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The study of photonic crystals, artificial materials whose dielectric properties can be tailored according to the stacking of its constituents, remains an attractive research area. In this article we have employed a transfer matrix treatment to study the propagation of light waves in Fibonacci quasiperiodic dieletric multilayers with graphene embedded. We calculated their dispersion and transmission spectra in order to investigate the effects of the graphene monolayers and quasiperiodic disorder on the system physical behavior. The quasiperiodic dieletric multilayer is composed of two building blocks, silicon dioxide (building block A = SiO2) and titanium dioxide (building block B = TiO2). Our numerical results show that the presence of graphene monolayers reduces the transmissivity on the whole range of frequency and induces a transmission gap in the low frequency region. Regarding the polarization of the light wave, we found that the transmission coefficient is higher for the transverse magnetic (TM) case than for the transverse electric (TE) one. We also conclude from our numerical results that the graphene induced photonic bandgaps (GIPBGs) do not depend on the polarization (TE or TM) of the light wave nor on the Fibonacci generation index n. Moreover, the GIPBGs are omnidirectional photonic band gaps, therefore light cannot propagate in this structures for frequencies lower than a certain value, whatever the incidence angle. Finally, a plot of the transmission spectra versus chemical potential shows that one can, in principle, adjust the width of the photonic band gap by tuning the chemical potential via a gate voltage.
description: 10 pages, 13 figures, Accepted for publication in Physical Review B
title: Biological productivity in the Southern Ocean across the Eocene-Oligocene transition
Creators: name: Rodrigues de Faria, Gabrielle
name: Özen, Volkan
name: Lazarus, David
name: Struck, Ulrich
name: Renaudie, Johan
name: Asatryan, Gayane
Publisher: name: Deutsche Geologische Gesellschaft - Geologische Vereinigung e.V. (DGGV)
Year: 2021

description: The Eocene-Oligocene transition (EOT, ~34Ma) marks a dramatic climate change and carbon cycle perturbation in the Cenozoic. Understanding the variations in export productivity associated with EOT provides important information about the feedback in regulating climate. We use the new generated benthic and planktonic oxygen and carbon isotope records combined with paleoproductivity proxies - Biological Barium [bio-Ba MAR] and benthic foraminifera accumulation rates [BFAR] - to infer variations in productivity during the EOT period in relation to changes in climate and paleoceanography. In addition, we present preliminary diatom diversity data. Marine diatoms have been known to be great contributors to the biological ocean carbon pump, so these data provide support for the understanding of these climatic events. Samples are from the Atlantic (ODP 689 and 1090) and Indian (ODP 748) sectors of the Southern Ocean. Our multiproxy records show evidence of increased export productivity in different periods throughout the Southern Ocean across EOT. The increase in productivity revealed in the late Eocene (~37 Ma) corroborates with an increase in marine diatoms diversity, suggesting that it could have contributed to the decrease in atmospheric CO2 and consequently to the cooling state. The timing of some observed changes differs in the sites of the Atlantic sector of the Southern Ocean. The increase in productivity in the early Oligocene in the farther to the south ODP 689 site may be related to the water mass changes and development of the Atlantic Circumpolar Current.
MOESM1 of Murine Gbp1 and Gbp2 are ubiquitinated independent of Toxoplasma gondii infection
Creators: name: Encheva, Vesela
name: ClĂŠmence Foltz
name: Snijders, Ambrosius
name: Eva-Maria Frickel
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Computational Biology

description: Additional file 1. Additional Methods.
Parking cars of different sizes
Creators: name: Ehrenborg, Richard
name: Happ, Alex
Publisher: name: arXiv
Year: 2017
Subjects: subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: 05A15

description: We extend the notion of parking functions to parking sequences, which include cars of different sizes, and prove a product formula for the number of such sequences.
description: 5 pages, 5 figues
Additional file 1 of RNF144A-AS1, a TGF-β1- and hypoxia-inducible gene that promotes tumor metastasis and proliferation via targeting the miR-30c-2-3p/LOX axis in gastric cancer
Creators: name: Li, Zengliang
name: Shi, Liang
name: Li, Xiangwei
name: Wang, Xiaopeng
name: Wang, Haixiao
name: Liu, Yeliu
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Table S1. Primers used for quantitative RT-PCR.
One-Dimensional Symmetry Protected Topological Phases and their Transitions
Creators: name: Verresen, Ruben
name: Moessner, Roderich
name: Pollmann, Frank
Publisher: name: arXiv
Year: 2017
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We present a unified perspective on symmetry protected topological (SPT) phases in one dimension and address the open question of what characterizes their phase transitions. In the first part of this work we use symmetry as a guide to map various well-known fermionic and spin SPTs to a Kitaev chain with coupling of range $α\in \mathbb Z$. This unified picture uncovers new properties of old models --such as how the cluster state is the fixed point limit of the Affleck-Kennedy-Lieb-Tasaki state in disguise-- and elucidates the connection between fermionic and bosonic phases --with the Hubbard chain interpolating between four Kitaev chains and a spin chain in the Haldane phase. In the second part, we study the topological phase transitions between these models in the presence of interactions. This leads us to conjecture that the critical point between any SPT with $d$-dimensional edge modes and the trivial phase has a central charge $c \geq \log_2 d$. We analytically verify this for many known transitions. This agrees with the intuitive notion that the phase transition is described by a delocalized edge mode, and that the central charge of a conformal field theory is a measure of the gapless degrees of freedom.
description: 18 pages, 9 figures, 3 page appendix
Additional file 1 of Circulating angiopoietin-like proteins in metabolic-associated fatty liver disease: a systematic review and meta-analysis
Creators: name: Ke, Yani
name: Liu, Shan
name: Zhang, Zheyuan
name: Hu, Jie
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 1. PRISMA 2009 checklist
From diffusive to ballistic transport in etched graphene constrictions and nanoribbons
Creators: name: Somanchi, Sowmya
name: Terrés, Bernat
name: Peiro, Julian
name: Staggenborg, Maximilian
name: Watanabe, Kenji
name: Taniguchi, Takashi
name: Beschoten, Bernd
name: Stampfer, Christoph
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Graphene nanoribbons and constrictions are envisaged as fundamental components of future carbon-based nanoelectronic and spintronic devices. At nanoscale, electronic effects in these devices depend heavily on the dimensions of the active channel and the nature of edges. Hence, controlling both these parameters is crucial to understand the physics in such systems. This review is about the recent progress in the fabrication of graphene nanoribbons and constrictions in terms of low temperature quantum transport. In particular, recent advancements using encapsulated graphene allowing for quantized conductance and future experiments towards exploring spin effects in these devices are presented. The influence of charge carrier inhomogeneity and the important length scales which play a crucial role for transport in high quality samples are also discussed.
description: 32 pages, 6 figures. Will appear in Annalen der Physik
Additional file 1: of Diversification of the muscle proteome through alternative splicing
Creators: name: Nakka, Kiran
name: Ghigna, Claudia
name: Gabellini, Davide
name: F. Dilworth
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Marine Biology
subject: 60506 Virology

description: List of genes that undergo alternative splicing in muscle tissue [218â 226]. (DOCX 36Â kb)
Consistent Estimation of Mixed Memberships with Successive Projections
Creators: name: Panov, Maxim
name: Slavnov, Konstantin
name: Ushakov, Roman
Publisher: name: arXiv
Year: 2017
Subjects: subject: Statistics Theory (math.ST)
subject: FOS: Mathematics

description: This paper considers the parameter estimation problem in Mixed Membership Stochastic Block Model (MMSB), which is a quite general instance of random graph model allowing for overlapping community structure. We present the new algorithm successive projection overlapping clustering (SPOC) which combines the ideas of spectral clustering and geometric approach for separable non-negative matrix factorization. The proposed algorithm is provably consistent under MMSB with general conditions on the parameters of the model. SPOC is also shown to perform well experimentally in comparison to other algorithms.
Rowmotion and Increasing Labeling Promotion
Creators: name: Dilks, Kevin
name: Striker, Jessica
name: Vorland, Corey
Publisher: name: arXiv
Year: 2017
Subjects: subject: Combinatorics (math.CO)
subject: FOS: Mathematics

description: In 2012, N. Williams and the second author showed that on order ideals of ranked partially ordered sets (posets), rowmotion is conjugate to (and thus has the same orbit structure as) a different toggle group action, which in special cases is equivalent to promotion on linear extensions of posets constructed from two chains. In 2015, O. Pechenik and the first and second authors extended these results to show that increasing tableaux under K-promotion naturally corresponds to order ideals in a product of three chains under a toggle group action conjugate to rowmotion they called hyperplane promotion. In this paper, we generalize these results to the setting of arbitrary increasing labelings of any finite poset with given restrictions on the labels. We define a generalization of K-promotion in this setting and show it corresponds to a toggle group action we call toggle-promotion on order ideals of an associated poset. When the restrictions on labels are particularly nice (for example, specifying a global bound on all labels used), we show that toggle-promotion is conjugate to rowmotion. Additionally, we show that any poset that can be nicely embedded into a Cartesian product has a natural toggle-promotion action conjuate to rowmotion.
description: 29 pages, 14 figures
title: "Wir bringen die breite Basis mit" – Gemeinsames Plädoyer für eine enge Einbindung der Landesinitiativen für Forschungsdatenmanagement in die Nationale Forschungsdateninfrastruktur
Creators: name: Axtmann, Alexandra
name: Böker, Elisabeth
name: Brand, Ortrun
name: Cyra, Magdalene
name: Dworschak, Nina
name: Fingerhuth, Matthias
name: Gerlach, Roman
name: Hartmann, Niklas
name: Jagusch, Gerald
name: Krähwinkel, Esther
name: Lipp, Robert
name: Müller-Pfefferkorn, Ralph
name: Nauss, Thomas
name: Neuroth, Heike
name: Putnings, Markus
name: Rehwald, Stephanie
name: Rex, Jessica
name: Rohrwild, Jürgen
name: Slowig, Benjamin
name: Thiemann, Stefan
name: Weiner, Barbara
Publisher: name: UNSPECIFIED
Year: 2022

description: Der Erfolg einer nationalen Forschungsdateninfrastruktur hängt von der Einbindung der gesamten Wissenschaftsgemeinschaft und -infrastruktur ab. In zahlreichen Bundesländern existieren Landesinitiativen für Forschungsdatenmanagement oder ähnliche Einrichtungen, die dazu beitragen können, diese Einbindung zu erreichen. Das gemeinsame Papier von Vertretern aus verschiedenen Bundesländern argumentiert, dass eine enge Verknüpfung der Landesinitiativen mit dem NFDI e.V. erfolgen sollte, um die Potentiale der Zusammenarbeit zu nutzen.
title: Microfluidics: From Crystallization to Serial Time-Resolved Crystallography
Creators: name: Sui, Shuo
name: Perry, Sarah L.
Publisher: name: University of Massachusetts Amherst
Year: 2017
Subjects: subject: proteins
subject: fluidic devices
subject: crystal structure
subject: crystallization
subject: x-ray diffraction
subject: Chemical Engineering
subject: FOS: Chemical engineering

description: Capturing protein structural dynamics in real-time has tremendous potential in elucidating biological functions and providing information for structure-based drug design. While time-resolved structure determination has long been considered inaccessible for a vast majority of protein targets, serial methods for crystallography have remarkable potential in facilitating such analyses. Here, we review the impact of microfluidic technologies on protein crystal growth and X-ray diffraction analysis. In particular, we focus on applications of microfluidics for use in serial crystallography experiments for the time-resolved determination of protein structural dynamics.
From effective Hamiltonian to anomaly inflow in topological orders with boundaries
Creators: name: Hu, Yuting
name: Wan, Yidun
name: Wu, Yong-Shi
Publisher: name: arXiv
Year: 2017
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: Quantum Algebra (math.QA)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: Whether two boundary conditions of a two-dimensional topological order can be continuously connected without a phase transition in between remains a challenging question. We tackle this challenge by constructing an effective Hamiltonian, describing anyon interaction, that realizes such a continuous deformation. At any point along the deformation, the model remains a fixed point model describing a gapped topological order with gapped boundaries. That the deformation retains the gap is due to the anomaly cancelation between the boundary and bulk. Such anomaly inflow is quantitatively studied using our effective Hamiltonian. We apply our method of effective Hamiltonian to the extended twisted quantum double model with boundaries (constructed by two of us in Ref.[1]). We show that for a given gauge group $G$ and a three-cocycle in $H^3[G,U(1)]$ in the bulk, any two gapped boundaries for a fixed subgroup $K\subseteq G$ on the boundary can be continuously connected via an effective Hamiltonian. Our results can be straightforwardly generalized to the extended Levin-Wen model with boundaries (constructed by two of us in Ref.[2].
description: 5 pages
The harmonic map heat flow on conic manifolds
Creators: name: Shao, Yuanzhen
name: Wang, Changyou
Publisher: name: arXiv
Year: 2017
Subjects: subject: Analysis of PDEs (math.AP)
subject: FOS: Mathematics

description: In this article, we study the the harmonic map heat flow from a manifold with conic singularities to a closed manifold. In particular, we have proved the short time existence and uniqueness of solutions as well as the existence of global solutions into manifolds with nonpositive sectional curvature. These results are established in virtue of the maximal regularity theory on manifolds with conic singularities.
title: CNRS-IHTP ARC 3019 (1-15) : inventaire des archives papier et sonores de Monique Hervo
Creators: name: IHTP
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2019

description: Inventaire des archives papier et sonores de Monique Hervo
Additional file 1: of Measuring multiple parameters of CD8+ tumor-infiltrating lymphocytes in human cancers by image analysis
Creators: name: Steele, Keith
name: Tze Tan
name: RenĂŠ Korn
name: Dacosta, Karma
name: Brown, Charles
name: Kuziora, Michael
name: Zimmermann, Johannes
name: Laffin, Brian
name: Widmaier, Moritz
name: Rognoni, Lorenz
name: Cardenes, Ruben
name: Schneider, Katrin
name: Anmarie Boutrin
name: Martin, Philip
name: Jiping Zha
name: Wiestler, Tobias
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Science Policy

description: Table S1 Relevant image information for nonclinical sample sets. Table S2 Nonclinical tumor samples, key patient data.Table S3 Overview of data used for statistical analysis. Table S4 Validation of CD8 IA using CD8 single stain and CD8/PD-L1 dual stain. (DOCX 91Â kb)
Additional file 2 of Association between delay in intensive care unit admission and the host response in patients with community-acquired pneumonia
Creators: name: Pereverzeva, Liza
name: Uhel, Fabrice
name: Peters Sengers, Hessel
name: Cremer, Olaf L.
name: Schultz, Marcus J.
name: Bonten, Marc M. J.
name: Scicluna, Brendon P.
name: van der Poll, Tom
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Physiology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Mental Health

description: Additional file 2: Table S2. Host response plasma biomarkers in patients with community-acquired pneumonia with direct or delayed admission to the intensive care unit, immunocompromised patients excluded.
Modelling daylight in buildings
Creators: name: Grobe
name: Wasilewski
Publisher: name: Zenodo
Year: 2021
Subjects: daylighting
light simulation
Radiance
raytraverse
BSDF
Bidirectional Scattering Distribution Function
gonio-photometry
ray-tracing
photon-mapping

description: Daylight simulation at the Competence Centre Building Envelopes and Civil Engineering at Lucerne University of Applied Sciences and Arts.
Holographic dark energy: constraints on the interaction from diverse observational data sets
Creators: name: Mukherjee, Purba
name: Mukherjee, Ankan
name: Jassal, H. K.
name: Dasgupta, Ananda
name: Banerjee, Narayan
Publisher: name: arXiv
Year: 2017
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: The present work deals with holographic dark energy models with Hubble horizon as the infra-red cut-off. The interaction rate between dark energy and dark matter has been reconstructed with three different choices of the interaction term. It is shown that the coupling parameter of the interaction term should evolve with redshift to allow the successful transition from decelerated to accelerated phase of expansion. Constraints on the model parameters are obtained from Markov Chain Monte Carlo (MCMC) analysis using the supernova distance modulus data and observational measurements of the Hubble parameter. Results show that the model with the coupling parameter increasing with redshift (z) or equivalently decreasing with the evolution, are ruled out. On the other hand, coupling parameters, increasing or slowly varying with the evolution, are consistent with the observed evolution scenario. A Bayesian evidence calculation has been carried out for statistical selection of the reconstructed models. Though the kinematical parameters are well behaved for these models, the physical variables which determine the nature of the components in the matter sector, are not at all realistic. We have concluded that the existence of spatial curvature is essential for this particular type of dark energy models.
description: 16 pages, 7 figures. Accepted for publication in EPJ Plus