cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
title: Text/Conference Paper
Creators: name: Gnoyke, Philipp
name: Schulze, Sandro
name: Krüger, Jacob
Publisher: name: Gesellschaft für Informatik e.V.
Year: 2022
Subjects: subject: software maintenance
subject: software evolution
subject: architecture smells
subject: software quality
subject: technical debt
subject: empirical study

description: This paper was published in the proceedings of the 37th International Conference on Software Maintenance and Evolution (ICSME 2021). If software quality assurance is postponed or abandoned for a software system, maintenance and evolution become harder or impossible. One symptom for the degradation of system quality are Architecture Smells (ASs), which violate fundamental principles of software design. We present a study on the evolution of ASs, including how and when they foster system degradation. This provides valuable insights regarding what ASs are meaningful to assure system quality. To this end, we analyzed the evolution of three types of ASs in 14 open-source systems, with 485 versions in total. We adapted previously used indicators to assess the severity of ASs (e.g., growth, lifetime), and relate ASs to technical debt. Our results indicate that 1) ASs remain mostly stable compared to the code size of a system, 2) certain types of ASs, such as cyclic dependencies, have a greater impact on system degradation, and 3) certain properties determine how much an AS contributes to software degradation. These findings are valuable for practitioners to identify and tackle system degeneration. Moreover, they help researchers to scope new research on managing ASs and technical debt.
Response relation in Pb-Pb and p-Pb collisions at 5.02 TeV
Creators: name: Wei, De-Xian
name: Zhou, Li-Juan
name: Li, Xin-Fei
Publisher: name: arXiv
Year: 2019
Subjects: subject: Nuclear Theory (nucl-th)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We carry out simulations using a multi-phase transport (AMPT) model to describe the response relation between $v_2$ and $\varepsilon_2$ in Pb-Pb and p-Pb collisions at $\sqrt{s_{NN}}=5.02$ TeV, respectively. To simulate such relation, two methods have been introduced in the calculation: one is the directed response (DR) method, which correlates the outgoing particles with the initial anisotropy directly, and the other one is the cumulants response (CR) method, which is constructed from a cumulants correlation between outgoing particles. Based on calculations of the DR and CR methods, the response relations as a function of the transverse momentum are both shown in Pb-Pb and p-Pb collisions. By comparing the DR and CR methods, we found that the linear response relations are almost identical in all the present collisions. Similar results of linear+cubic response relations are also shown in the higher multiplicity systems, and it has become a significant difference in the lower multiplicity systems, i.e., the peripheral Pb-Pb collisions and p-Pb collisions. Throughout the whole $p_{T}$-dependent simulations, the $κ_2$ in the linear response and in the linear+cubic response are almost identical, except for in the lower multiplicity systems by the DR method. If one implements a pseudorapidity gap by the CR calculation, the $p_{T}$-dependent and $η$-independent response relations are similarly shown in peripheral Pb-Pb systems and p-Pb systems, which may imply that a collective response exists in the most central p-Pb collisions. These collective behaviors are dominantly produced on the stage of the medium expansions.
description: 6 pages, 3 figures. Some errors in previous version corrected. This version accepted by Phys. Rev. C
MOESM2 of Uncovering extensive post-translation regulation during human cell cycle progression by integrative multi-â omics analysis
Creators: name: Parkes, Gregory
name: Mahesan Niranjan
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 2 Naive linear predictor of protein using mRNA and translation. Scatterplots of measured (y) versus predicted ( Ĺˇ $\hat y$ ) protein across G1, S and G2/M cell cycle phases, with Spearman-rank correlation rs, sample size n and number of parameters p.
Unattainability of the Trans-Planckian regime in Nonlocal Quantum Gravity
Creators: name: Briscese, Fabio
name: Modesto, Leonardo
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Based on the ultraviolet asymptotic freedom of nonlocal quantum gravity, we show that the trans-Planckian energy regime is unattainable in laboratory experiments. As physical implications, it turns out that the violation of causality, typical of nonlocal field theories, can never be detected in particle accelerators, while the asymptotic freedom of the theory provides an elegant solution to the so called trans-Planckian cosmological problem.
description: 13 pages, version published in JHEP
Anoplophilus esakii Furukawa 1938
Creators: name: Storozhenko, Sergey Yu.
name: Paik, Jong-Cheol
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Orthoptera
Rhaphidophoridae
Anoplophilus
Anoplophilus esakii

description: Anoplophilus esakii Furukawa, 1938
 Anoplophilus esakii Furukawa, 1938: 178, figs. 2e–n, 3f–m, Pl. 4, figs. m–p. (holotype —female, Japan: Kyushu, Mt. Hikosan; in the Entomological Laboratory of Kyushu University); Ichikawa, 1997: 74; Otte, 2000: 81; Ishikawa, 2002: 10, fig. 9; Ichikawa et al., 2006: 38, 386.
 Distribution. Japan: Kyushu.
description: Published as part of Storozhenko, Sergey Yu. & Paik, Jong-Cheol, 2010, Yu. & Paik, J. - C, pp. 49-60 in Zootaxa 2421 on page 52
Semi-Quantum Money
Creators: name: Radian, Roy
name: Sattath, Or
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: Cryptography and Security (cs.CR)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: Quantum money allows a bank to mint quantum money states that can later be verified and cannot be forged. Usually, this requires a quantum communication infrastructure to transfer quantum states between the user and the bank. Gavinsky (CCC 2012) introduced the notion of classically verifiable quantum money, which allows verification through classical communication. In this work we introduce the notion of classical minting, and combine it with classical verification to introduce semi-quantum money. Semi-quantum money is the first type of quantum money to allow transactions with completely classical communication and an entirely classical bank. This work features constructions for both a public memory-dependent semi-quantum money scheme and a private memoryless semi-quantum money scheme. The public construction is based on the works of Zhandry and Coladangelo, and the private construction is based on the notion of Noisy Trapdoor Claw Free Functions (NTCF) introduced by Brakerski et al. (FOCS 2018). In terms of technique, our main contribution is a perfect parallel repetition theorem for NTCF.
description: 81 pages LaTeX; new discussions and figures
A multiscale model for traffic regulation via autonomous vehicles
Creators: name: Garavello, Mauro
name: Goatin, Paola
name: Liard, Thibault
name: Piccoli, Benedetto
Publisher: name: arXiv
Year: 2019
Subjects: subject: Analysis of PDEs (math.AP)
subject: FOS: Mathematics

description: Autonomous vehicles (AVs) allow new ways of regulating the traffic flow on road networks. Most of available results in this direction are based on microscopic approaches, where ODEs describe the evolution of regular cars and AVs. In this paper, we propose a multiscale approach, based on recently developed models for moving bottlenecks. Our main result is the proof of existence of solutions for open-loop controls with bounded variation.
Newton's laws of motion in form of Riccati equation
Creators: name: Nowakowski, M.
name: Rosu, H. C.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Classical Physics (physics.class-ph)
subject: FOS: Physical sciences

description: We discuss two applications of Riccati equation to Newton's laws of motion. The first one is the motion of a particle under the influence of a power law central potential $V(r)=k r^ε$. For zero total energy we show that the equation of motion can be cast in the Riccati form. We briefly show here an analogy to barotropic Friedmann-Robertson-Lemaitre cosmology where the expansion of the universe can be also shown to obey a Riccati equation. A second application in classical mechanics, where again the Riccati equation appears naturally, are problems involving quadratic friction. We use methods reminiscent to nonrelativistic supersymmetry to generalize and solve such problems
description: 4 pages, twocolumn, accepted at Phys. Rev. E (2002)
Additional file 2 of Social and economic consequences of the cost of obstetric and neonatal care in Lubumbashi, Democratic Republic of Congo: a mixed methods study
Creators: name: Angèle, Musau Nkola
name: Ntambue Mukengeshayi Abel
name: Omewatu Mungomba Jacques
name: Mundongo Tshamba Henri
name: Malonga Kaj Françoise
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 2. Survey Questionnaire. This is the questionnaire used to collect quantitative data from women giving birth.
Mesomorphic properties of non-symmetric bent-core liquid crystals with a lateral substituent in the apex position
Creators: name: Skopalová, Helena
name: Kozmík, Václav
name: Šmahel, Michal
name: Jiří Svoboda
name: Pacherová, Oliva
name: Kohout, Michal
name: Novotná, Vladimíra
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: We present a new series of bent-core liquid crystals possessing a lateral substituent in the apex position of the central core and a terephthalate connecting unit in one elongating side arm. The synthesised materials have been studied by polarising optical microscopy, differential scanning calorimetry, dielectric spectroscopy and X-ray diffraction. Electro-optical studies have also been performed to confirm the character of the identified polar smectic phase. We document that materials substituted with fluorine exhibit polar synclininic antiferroelectric phase, for homologues with longer terminal alkyl chains, this SmCSPA phase is accompanied with a high-temperature SmC phase. Our results document that the introduction of the aforementioned structural features triggers significant modification of the mesomorphic behaviour previously observed for similar compounds.
MOESM1 of Uncovering extensive post-translation regulation during human cell cycle progression by integrative multi-â omics analysis
Creators: name: Parkes, Gregory
name: Mahesan Niranjan
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Molecular Biology
subject: Pharmacology
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 1 mRNA comparison between genes with and without missing translation measurements. Points with (blue circle, rs=0.23-0.24) and without (red triangle, rs=0.46-0.48) missing translation data. Linear model (black) with mean centre of cluster (shape refers to group).
title: Text/Conference Paper
Creators: name: Höppner, Stefan
name: Kehrer, Timo
name: Tichy, Matthias
Publisher: name: Gesellschaft für Informatik e.V.
Year: 2022
Subjects: subject: ATL
subject: Java
subject: Model transformations
subject: Model transformation language
subject: General purpose language
subject: Comparison
subject: MTL vs
subject: GPL
subject: Historical Perspecitve
subject: Complexity Measure
subject: Size Measure

description: Model transformations are one key concept of model-driven engineering, and model transformation languages (MTLs) emerged with its popularity about 15 to 20 years ago. MTLs claim to ease model transformation development by abstracting from recurring transformation aspects and hiding complex semantics behind simple and intuitive syntax. Nonetheless, MTLs are rarely adopted in practice, there is still no empirical evidence for the claim of easier development, and the argument of abstraction deserves a fresh look in the light of modern general-purpose languages (GPLs) which have undergone a significant evolution in the last two decades. In our SoSyM paper, we report on a study in which we compare the complexity and size of model transformations written in three different languages, namely (i) the Atlas Transformation Language (ATL), (ii) Java SE5 (2004-2009), and (iii) Java SE14 (2020); the Java transformations are derived from an ATL specification using a translation schema we developed. Based on the results of these comparisons, we discuss the concrete advancements in newer Java versions. We also discuss to which extent new language advancements justify writing transformations in a GPL rather than a dedicated MTL. We further indicate potential avenues for future research on the comparison of MTLs and GPLs.
Spin connection and cosmological perturbations in $f(T)$ gravity
Creators: name: Toporensky, A.
name: Tretyakov, P.
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: In this paper we study cosmological perturbations in teleparallel gravity. We discuss problems which appear in standard approach to $f(T)$ gravity, and find that these problems may be solved within covariant formulation of teleparallel gravity, which take into account spin connection. We calculate spin connection which symmetrize equation for perturbation and split diagonal and non-diagonal part of equation of motion. We demonstrate that there is minimal solution for spin connection, which lead to zero slip, however, in this case one additional equation appears, so the system may become over-determined. After that, we show that a more general solution exists, which is incompatible with zero slip, but allows to write down the equations of motion for cosmological perturbation in a self-consistent way without additional equations to be satisfied.
description: 13 pages, no figures, final version to appear in Phys. Rev. D
The K-alpha complex of He-like iron with dielectronic satellites
Creators: name: Oelgoetz, Justin
name: Pradhan, Anil K.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: Atomic Physics (physics.atom-ph)
subject: FOS: Physical sciences

description: It is shown that the dielectronic satellites (DES) dominate X-ray spectral formation in the 6.7 keV K-alpha complex of Fe XXV at temperatures below that of maximum abundance in collisional ionization equilibrium T_m. Owing to their extreme temperature sensitivity the DES are excellent spectral diagnostics for T < T_m in photoionized, colllisional, or hybrid plasmas; whereas the forbidden, intercombination, and resonance lines of Fe XXV are not. A diagnostic line ratio GD(T) is defined including the DES and the lines, with parameters from new relativistic atomic calculations. The DES absorption resonance strengths may be obtained from differential oscillator strengths to possibly yield the Fe XXIV/Fe XXV column densities. The DES contribution to highly ionized Fe should be of interest for models of redward broadening of K-alpha features, ionized accretion discs, accretion flows, and K-alpha temporal-temperature variability in AGN.
description: 5 pages, 4 Figs., submitted to MNRAS. High-resolution, full-size figures are available from http://www.astronomy.ohio-state.edu/~pradhan
Stable Neutral Fermi Ball
Creators: name: Ogure, K.
name: Yoshida, T.
name: Arafune, J.
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Fermi Ball is a kind of nontopological soliton with fermions trapped in its domain wall, and is suggested to arises from the spontaneous symmetry breaking of the approximate $Z_2$ symmetry in the early universe. We find that the neutral thin-wall Fermi Ball is stable in the limited region of the scalar self-coupling constant $λ$ and the Yukawa coupling constant $G$. We find that the Fermi Ball is stabilized due to the curvature effect of the domain wall caused by the fermion sector. We also discuss whether such stable Fermi Balls may contribute to the cold dark matter.
description: 18 pages in RevTeX, 5 figures
The Welfare Effects of Opening to Foreign Direct Investment in Polluting Sectors
Creators: name: Galinato, Gregmar I.
name: Graciano, Tim A.
name: Zhao, Xin
name: Galinato, Gregmar I.
name: Graciano, Tim A.
name: Zhao, Xin
Publisher: name: Unknown
Year: 2015
Subjects: subject: Environmental Economics and Policy
subject: International Relations/Trade
subject: Resource /Energy Economics and Policy
subject: Environmental Regulations
subject: Infrastructure
subject: Welfare
subject: Pollution Haven

description: This article shows how policies to attract foreign direct investment (FDI) in a polluting sector affect home-country welfare relative to the autarky case. We consider a welfare maximizing country who attracts FDI into a polluting sector, while accounting for environmental quality changes. The government sets the level of environmental regulation and public infrastructure. Foreign investors prefer good infrastructure quality and less environmental regulation. We show that under autarky, environmental regulations are increasing over infrastructure. However, with FDI, optimal environmental regulations may be a subsidy if the benefits from a wage increase outweigh the damages from pollution. Also, we find that if a country has very poor levels of infrastructure it is better off not allowing FDI to enter but as infrastructure quality increases, the result is reversed where welfare with FDI is higher than under autarky.
A systematic study of stacked square nets: from Dirac fermions to material realizations
Creators: name: Klemenz, Sebastian
name: Schoop, Leslie
name: Cano, Jennifer
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Non-symmorphic symmetries protect Dirac line nodes in square net materials. This phenomenon has been most prominently observed in ZrSiS. Here, we systematically study the symmetry-protected nodal fermions that result from different ways of embedding the square net into a larger unit cell. Surprisingly, we find that a nonsymmorphic space group is not a necessary condition for a filling enforced semimetal: symmorphic space groups can also host nodal fermions that are enforced by band folding and electron count, that is, a combination of a particular structural motif combined with electron filling. We apply the results of this symmetry analysis to define an algorithm, which we utilize to find square net materials with nodal fermions in specific symmorphic space groups. We highlight one result of this search, the compound ThGeSe, which has not been discussed before in the context of nodal fermions. Finally, we discuss how band folding can impose constraints on band connectivity beyond the connectivity of single elementary band representations.
description: v2 (published version) has new section on SOC
Liquid crystal-based optical sensor for the detection of cysteine through competitive host-guest inclusion
Creators: name: Kirtika Mishra
name: Bachcha Singh
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology

description: A β-cyclodextrin (β-CD) inclusion complex containing L-cysteine (CYS) as a guest was prepared by freeze drying method. Formation of the inclusion complex was confirmed by powder X-ray diffraction pattern, Fourier-transform infrared spectroscopy, thermogravimetric analysis, differential scanning calorimetry and scanning electron microscopy. The interaction between CYS and β-CD was also analysed by conductivity measurement in aqueous solution. Thereafter, we developed a liquid crystal (LC)-based sensor system to detect CYS in aqueous solution following the principle of competitive host–guest inclusion. Here the guests sodium dodecyl sulphate (SDS) and CYS compete for the same hydrophobic cavity of host β-CD. The dark optical image observed by polarising optical microscope confirms that CYS forms inclusion complex with β-CD leaving SDS free which aligns LCs homeotropically. The constructed LC-based sensor could detect CYS up to 30 µM in aqueous solution. Moreover the practical approach of this system was validated by sensing CYS in human serum.
title: Text/Conference Paper
Creators: name: Genfer, Patric
name: Zdun, Uwe
Publisher: name: Gesellschaft für Informatik e.V.
Year: 2022
Subjects: subject: Microservice API
subject: domain-based cyclic dependencies
subject: metrics
subject: source code detectors

description: Isolation, autonomy, and loose coupling are critical success factors of microservice architectures, but unfortunately, systems tend to become strongly coupled over time and sometimes even exhibiting cyclic communication chains. These cycles can even manifest on a conceptual or domain level, making them hard to track for algorithms that rely solely on static analysis. Accordingly, previous attempts to detect cycles either focused on synchronous communication or had to collect additional runtime data, which can be costly and time-consuming. We suggest a novel approach for identifying and evaluating domain-based cyclic dependencies in microservice systems based on modular, reusable source code detectors. Based on the architecture model reconstructed by our detectors, we derived a set of architectural metrics for identifying and classifying domain-based cyclical dependencies. By conducting two case studies on open-source microservice architectures, we validated the feasibility and applicability of our approach.
Classification of Local Conformal Nets. Case c < 1
Creators: name: Kawahigashi, Yasuyuki
name: Longo, Roberto
Publisher: name: arXiv
Year: 2002
Subjects: subject: Mathematical Physics (math-ph)
subject: High Energy Physics - Theory (hep-th)
subject: Operator Algebras (math.OA)
subject: FOS: Physical sciences
subject: FOS: Mathematics
subject: 81T40; 46L37; 17B68 (Primary); 81T08; 46L60; 22E67; 81R10 (Secondary)

description: We completely classify diffeomorphism covariant local nets of von Neumann algebras on the circle with central charge c less than 1. The irreducible ones are in bijective correspondence with the pairs of A-D_{2n}-E_{6,8} Dynkin diagrams such that the difference of their Coxeter numbers is equal to 1. We first identify the nets generated by irreducible representations of the Virasoro algebra for c<1 with certain coset nets. Then, by using the classification of modular invariants for the minimal models by Cappelli-Itzykson-Zuber and the method of alpha-induction in subfactor theory, we classify all local irreducible extensions of the Virasoro nets for c<1 and infer our main classification result. As an application, we identify in our classification list certain concrete coset nets studied in the literature.
description: 30 pages, LaTeX2e
Additional file 1 of TAG pathway engineering via GPAT2 concurrently potentiates abiotic stress tolerance and oleaginicity in Phaeodactylum tricornutum
Creators: name: Wang, Xiang
name: Liu, Si-Fen
name: Li, Ruo-Yu
name: Yang, Wei-Dong
name: Liu, Jie-Sheng
name: Lin, Carol Sze Ki
name: Balamurugan, Srinivasan
name: Li, Hong-Ye
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified

description: Additional file 1: Fig. S1. In silico analyses of GPAT2 sequence. (A) Protein structure of GPAT2. (B) Phylogeny analysis of GPAT2 from the deduced amino acid sequence of GPAT2 and GPAT of various organisms. Phylogenetic tree was constructed by MEGA using Neighbor joining method. Percentage of the replicate trees where the taxa clustered together in the bootstrap value (500 replicates) are provided in the branches. Arrow mark denotes the GPAT2 of P. tricornutum. Fig. S2. Analyses of photosynthetic parameters in transgenics. (A) Maximum quantum yield of photosystem II as indicated by Fv/Fm. (B) Determination of chlorophyll α content (pg/cell). (C) Non-photo chemical quenching (NPQ). (D) Electron transport rate (ETR) (µmol e-m-2s-1). Significant difference between WT and transgenics is indicated at the p < 0.05 (*) or p < 0.01 (**) level. Each value represents the mean ± SD (n = 3). Fig. S3. Characterization of physiological parameters under hyposaline and chilling conditions. Specific growth rate (A) and growth curve (B) under hyposaline conditions. Specific growth rate (C) and growth curve (D) at chilling condition (10 ºC). Significant difference between WT and transgenics is indicated at the p < 0.05 (*) or p < 0.01 (**) level. Each value represents the mean ± SD (n = 3). Fig. S4. Characterization of photosynthetic parameters under 70 % hyposaline and 10 ºC. Determination of (A) Chlorophyll α content, (B) NPQ, (C) ETR (µmol e-m-2s-1) and (D) Fv/Fm under 70% hyposaline conditions. Determination of (E) Chlorophyll α content, (F) NPQ, (G) ETR (µmol e-m-2s-1) and (H) Fv/Fm at 10 ºC. Significant difference between WT and transgenics is indicated at the p < 0.05 (*) or p < 0.01 (**) level. Each value represents the mean ± SD (n = 3). Fig. S5. Analysis of glycolipids in transgenic cells under hyposaline and chilling stress conditions. (A) Glycolipid content (% DCW) under 70% hyposaline conditions. (B) Glycolipid content (% DCW) under chilling condition (10 ºC). Significant difference between WT and transgenics is indicated at the p < 0.05 (*) or p < 0.01 (**) level. Each value represents the mean ± SD (n = 3). Table S1. Proportion of C16 and C18 fatty acids in TAG at sn-1/3 position. Table S2. Proportion of C16 and C18 fatty acids in TAG at sn-2 position. Table S3. Primers used in this study.
Empirical Documentation of Bid Shading in the Discriminatory Auction
Creators: name: Elskamp, Rebecca
name: Elskamp, Rebecca
Publisher: name: Unknown
Year: 2015
Subjects: subject: Institutional and Behavioral Economics
subject: uniform auction
subject: discriminatory auction
subject: auction efficiency
subject: bid shading

description: This manuscript provides an empirical documentation of the existence and magnitude of heterogeneous bid shading in the discriminatory auction. Unlike existing empirical work that uses aggregate data, this manuscript makes use of a unique data set collected at the individual bidder level containing bidding behaviour and detailed cost information covering a natural experiment in which the format of the auction switches from uniform to discriminatory pricing. Preliminary regression results indicate that bid prices in the discriminatory auction are $1,813 lower than bid prices in the uniform auction. In other words, the magnitude of bid shading in the discriminatory price auction is on average 6.3% of bidders’ willingness to pay. Capacity utilization, housing type and milking system are bidder-specific characteristics identified as determinants in explaining heterogeneity in bid shading across bidders. In terms of allocative efficiency, the uniform auction achieves a higher average efficiency of 91% compared to an average efficiency of 74% reached by the discriminatory auction. The majority of the inefficiency of the discriminatory auction is attributed to the use of bid-spreading strategies while the remaining portion of inefficiency is due to heterogeneous bid shading across bidders. All auction inefficiency identified in the uniform auction is attributed to the use of bid-spreading strategies.
Luminescent mesogenic dimeric borondifluoride complexes
Creators: name: Zih-Yang Lei
name: Cai, Yi-Hong
name: Gene-Hsiang Leea
name: Lai, Chung K.
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Cell Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Plant Biology
subject: FOS: Biological sciences

description: Two new families of dimeric borondifluoride complexes derived from β-enaminoketones containing terminal phenyl and naphthalenyl groups were prepared, and their mesomorphic and optical properties investigated. One single crystallographic structure of mesogenic complex 1a-BF2 (n = 12) was determined by X-ray analysis; it crystallises in a monoclinic space group P21/c and the geometry on boron atoms was all tetrahedral. The crystal was considered as linear-shaped with a length of ~51.95 Å. A relatively large dihedral angle of ~38.85° between the central phenyl spacer and tetrahedral BF2 moiety was observed. Mesomorphic properties were crucially impacted by the structure of the central spacer and terminal group; all bis(borondifluoride) complexes formed SmC or SmA phase except complexes 1b-BF2 (m = 2, 3) and 1c-BF2. H–bond interactions supported by FT-IR spectra were attributed to the induction of SmA phase in compound 2 c-BF2. The optical property of the boron complexes was related with their molecular structures, and they emitted blue-to-green emissions at λmax = 420–538 nm in CH2Cl2. This is the first twin liquid crystal of bis(BF2) complexes derived from Schiff baseβ-enaminoketones.
Hamming distance geometry of a protein conformational space. Application to the clustering of a 4 ns molecular dynamics trajectory of the HIV-1 integrase catalytic core
Creators: name: Laboulais, Cyril
name: Ouali, Mohammed
name: Bret, Marc Le
name: Gabarro-Arpa, Jacques
Publisher: name: arXiv
Year: 2001
Subjects: subject: Biological Physics (physics.bio-ph)
subject: Chemical Physics (physics.chem-ph)
subject: Quantitative Biology (q-bio)
subject: FOS: Physical sciences
subject: FOS: Biological sciences

description: Protein structures can be encoded into binary sequences, these are used to define a Hamming distance in conformational space: the distance between two different molecular conformations is the number of different bits in their sequences. Each bit in the sequence arises from a partition of conformational space in two halves. Thus, the information encoded in the binary sequences is also used to characterize the regions of conformational space visited by the system. We apply this distance and their associated geometric structures, to the clustering and analysis of conformations sampled during a 4 ns molecular dynamics simulation of the HIV-1 integrase catalytic core. The cluster analysis of the simulation shows a division of the trajectory into two segments of 2.6 and 1.4 ns length, which are qualitatively different: the data points to the fact that equilibration is only reached at the end of the first segment. Some length of the paper is devoted to compare the Hamming distance to the r.m.s. deviation measure. The analysis of the cases studied so far, shows that under the same conditions the two measures behave quite differently, and that the Hamming distance appears to be more robust than the r.m.s. deviation.
Improved Sterile Neutrino Constraints from the STEREO Experiment with 179 Days of Reactor-On Data
Creators: name: STEREO Collaboration
name: Almazán, H.
name: Bernard, L.
name: Blanchet, A.
name: Bonhomme, A.
name: Buck, C.
name: Sanchez, P. del Amo
name: Atmani, I. El
name: Haser, J.
name: Kandzia, F.
name: Kox, S.
name: Labit, L.
name: Lamblin, J.
name: Letourneau, A.
name: Lhuillier, D.
name: Licciardi, M.
name: Lindner, M.
name: Materna, T.
name: Minotti, A.
name: Pessard, H.
name: Réal, J. -S.
name: Roca, C.
name: Rogly, R.
name: Salagnac, T.
name: Savu, V.
name: Schoppmann, S.
name: Sergeyeva, V.
name: Soldner, T.
name: Stutz, A.
name: Vialat, M.
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: Instrumentation and Detectors (physics.ins-det)
subject: FOS: Physical sciences

description: The STEREO experiment is a very short baseline reactor antineutrino experiment. It is designed to test the hypothesis of light sterile neutrinos being the cause of a deficit of the observed antineutrino interaction rate at short baselines with respect to the predicted rate, known as the reactor antineutrino anomaly. The STEREO experiment measures the antineutrino energy spectrum in six identical detector cells covering baselines between 9 and 11 m from the compact core of the ILL research reactor. In this article, results from 179 days of reactor turned on and 235 days of reactor turned off are reported at a high degree of detail. The current results include improvements in the modelling of detector optical properties and the gamma-cascade after neutron captures by gadolinium, the treatment of backgrounds, and the statistical method of the oscillation analysis. Using a direct comparison between antineutrino spectra of all cells, largely independent of any flux prediction, we find the data compatible with the null oscillation hypothesis. The best-fit point of the reactor antineutrino anomaly is rejected at more than 99.9% C.L.
description: 31 pages, 35 figures, for supplemental data see http://doi.org/10.17182/hepdata.92323
Additional file 1 of Enhanced PeriOperative Care and Health protection programme for the prevention of surgical site infections after elective abdominal surgery (EPO2CH): statistical analysis plan of a randomised controlled multicentre superiority trial
Creators: name: S. W. De Jonge
name: N. Wolfhagen
name: A. H. Zwinderman
name: M. W. Hollmann
name: M. A. Boermeester
name: Dijkgraaf, M. G. W.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: 60506 Virology
subject: FOS: Biological sciences

description: Additional file 1: Appendix 1. Additional figures. Appendix 2. Theoretical considerations: Elaboration on within-centre effect. Appendix 3. Completed checklist for Guideline for Statistical Analysis Plan. Appendix 4. Signature sheet.
Estimating the Impact of Organic Equivalency Agreements on U.S. Agricultural Trade
Creators: name: Demko, Iryna
name: Jaenicke, Edward C.
name: Demko, Iryna
name: Jaenicke, Edward C.
Publisher: name: Unknown
Year: 2015
Subjects: subject: Agricultural and Food Policy
subject: International Relations/Trade
subject: organic equivalency agreement
subject: organic export
subject: organic import

description: This study uses new organic import/export data to test the hypothesis that a 2012 organic certification equivalency agreement between the European Union and the United States positively influenced U.S. trade of organic agricultural commodities. Using a difference-in-difference approach, we find that the likelihood of exporting any level of organic products to a particular E.U. country increased due to the agreement, as did the share of organic exports to the E.U. We intend to estimate the effect on organic imports from the E.U. in a similar way.
Tunneling vortex dynamics in linearly coupled Bose-Hubbard rings
Creators: name: Escrivà, Albert
name: Mateo, Antonio Muñoz
name: Guilleumas, Montserrat
name: Juliá-Díaz, Bruno
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The quantum dynamics of population-balanced fractional vortices and population-imbalanced vortices in an effective two-state bosonic system, made of two coupled discrete circuits with few sites, is addressed within the Bose-Hubbard model. % We show that for low on-site interaction, the tunneling of quantized vortices between the rings performs a coherent, oscillating dynamics connecting current states with chiral symmetry. The vortex-flux transfer dually follows the usual sinusoidal particle current of the Josephson effect, in good agreement with a mean-field approximation. Within such regime, the switch of persistent currents in the rings resembles flux-qubit features, and is feasible to experimental realization. On the contrary, strong interatomic interactions suppress the chiral current and lead the system into fragmented condensation.
description: 10 pages, 6 figures. Matches the published version
title: Text/Conference Paper
Creators: name: Haas, Roman
name: Niedermayr, Rainer
name: Roehm, Tobias
name: Apel, Sven
Publisher: name: Gesellschaft für Informatik e.V.
Year: 2022
Subjects: subject: unnecessary code
subject: code stability
subject: code centrality

description: Dieser Beitrag fasst einen im ACM Journal Transactions on Software Engineering and Methodology veröffentlichten Artikel von Haas et al. [Ha20] zusammen. Darin geht es um die Identifikation von unnützem Code, also Code, der nicht mehr benötigt wird. In den meisten gewachsenen Softwaresystemen sind Teile des Codes im Laufe der Zeit unnütz geworden. Unnützer Code ist problematisch, weil dadurch Ressourcen bei der Entwicklung und Wartung verschwendet werden, beispielsweise bei der Vorbereitung für eine bevorstehende Migration oder Zertifizierung. Zwar kann mithilfe eines Profilers nicht mehr produktiv verwendeter Code aufgedeckt werden, aber oft ist es zu zeitaufwendig bis repräsentative Daten erhoben wurden. Im oben genannten Beitrag wird ein auf Codestabilität und -zentralität basierender statischer Analyseansatz vorgeschlagen, um unnützen Code zu identifizieren. Um die Nützlichkeit des Ansatzes zu untersuchen, wurde eine Studie mit 14 Open-Source-und Closed-Source Software-Systemen durchgeführt. Da es kein perfektes Orakel für unnützen Code gibt, wurden die Empfehlungen für unnützen Code auf Basis von Löschungen in der Codehistorie, Laufzeitnutzungsdaten und dem Feedback von 25 Entwicklern aus fünf Software-Projekten evaluiert. Die Studie zeigt, dass aus Stabilitäts-und Zentralitätsinformationen generierte Empfehlungen auf unnützen Code hinweisen. Insgesamt deuten die Ergebnisse darauf hin, dass die statische Analyse schnelles Feedback zu unnützem Code liefern kann und in der Praxis nützlich ist.
Anoplophilus major Ishikawa 2002
Creators: name: Storozhenko, Sergey Yu.
name: Paik, Jong-Cheol
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Orthoptera
Rhaphidophoridae
Anoplophilus
Anoplophilus major

description: Anoplophilus major Ishikawa, 2002
 Anoplophilus major Ishikawa, 2002: 10, figs. 1–5, 10 (holotype —female, Japan: Honshu, Mt. Hakamagoshi-dake, Fuji City; in the Osaka Museum of Natural History, Osaka); Ichikawa et al., 2006: 38, 387.
 Distribution. Japan: Honshu.
description: Published as part of Storozhenko, Sergey Yu. & Paik, Jong-Cheol, 2010, Yu. & Paik, J. - C, pp. 49-60 in Zootaxa 2421 on page 56
Complete analysis of polarization effects in e gamma -> e gamma with REDUCE
Creators: name: Grozin, A. G.
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Formulae for the matrix element squared of the process e gamma -> e gamma with all four particles polarized are obtained using REDUCE.
description: Old preprint made available by popular demand
MOESM11 of Uncovering extensive post-translation regulation during human cell cycle progression by integrative multi-â omics analysis
Creators: name: Parkes, Gregory
name: Mahesan Niranjan
Publisher: name: figshare
Year: 2019
Subjects: subject: Cell Biology
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 11 Feature Selection procedure. Description of the feature selection process for RFE, L1 and Select k-Best, including parameter choices in this pdf.
Empirical modelling of production decisions of heterogeneous farmers with mixed models
Creators: name: Koutchadé, Philippe
name: Carpentier, Alain
name: Féménia, Fabienne
name: Koutchadé, Philippe
name: Carpentier, Alain
name: Féménia, Fabienne
Publisher: name: Unknown
Year: 2015
Subjects: subject: Farm Management
subject: Land Economics/Use
subject: Production Economics
subject: Research Methods/ Statistical Methods
subject: Unobserved heterogeneity
subject: random parameter models
subject: agricultural production choices

description: To account for the effects of heterogeneity in micro-econometric models has been major concern in labor economics, empirical industrial organization or trade economics for at least two decades. The micro-econometric agricultural production choice models found in the literature largely ignore the impacts of unobserved heterogeneity. This can partly be explained by the dimension of these models which deal with large choice sets, e.g., acreage choices, input demands and yield supplies. We propose a random parameter framework to account for the unobserved heterogeneity in micro-econometric agricultural production choices models. This approach allows accounting for unobserved farms’ and farmers’ heterogeneity in a fairly flexible way. We estimate a system of yield supply and acreage choice equations with a panel set of French crop growers. Our results show that heterogeneity significantly matters in our empirical application and that ignoring the heterogeneity of farmers’ choice processes can have important impacts on simulation outcomes. Due to the dimension of the estimation problem and the functional form of the considered production choice model, the Simulated Maximum Likelihood approach usually considered in the applied econometrics literature in such context is empirically intractable. We show that specific versions of the Stochastic Expectation-Maximization algorithms proposed in the statistics literature can be implemented.
Generalized Richardson-Lucy (GRL) for analyzing multi-shell diffusion MRI data
Creators: name: Guo, Fenghua
name: Leemans, Alexander
name: Viergever, Max A.
name: Dell'Acqua, Flavio
name: De Luca, Alberto
Publisher: name: arXiv
Year: 2019
Subjects: subject: Medical Physics (physics.med-ph)
subject: Computational Engineering, Finance, and Science (cs.CE)
subject: Image and Video Processing (eess.IV)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: Spherical deconvolution is a widely used approach to quantify fiber orientation distribution from diffusion MRI data. The damped Richardson-Lucy (dRL) is developed to perform robust spherical deconvolution on single shell diffusion MRI data. While the dRL algorithm could in theory be directly applied to multi-shell data, it is not optimised to model the signal from multiple tissue types. In this work, we introduce a new framework based on dRL - dubbed Generalized Richardson Lucy (GRL) - that uses multi-shell data in combination with user-chosen tissue models to disentangle partial volume effects and increase the accuracy in FOD estimation. The optimal weighting of multi-shell data in the fit and the robustness to noise and partial volume effects of GRL was studied with synthetic data. Subsequently, we investigated the performances of GRL in comparison to dRL on a high-resolution diffusion MRI dataset from the Human Connectome Project and on an MRI dataset acquired at 3T on a clinical scanner. The feasibility of including intra-voxel incoherent motion (IVIM) effects in the modelling was studied on a third dataset. Results of simulations show that GRL can robustly disentangle different tissue types at SNR above 20 and improves the angular accuracy of the FOD estimation. On real data, GRL provides signal fraction maps that are physiologically plausible and consistent between datasets. When considering IVIM effects, high blood pseudo-diffusion fraction is observed in the medial temporal lobe and in the sagittal sinus. In comparison to dRL, GRL provides sharper FODs and less spurious peaks in presence of partial volume effects and results in a better tract termination at the grey/white matter interface or at the outer cortical surface. In conclusion, GRL offers a new modular and flexible framework to perform spherical deconvolution of multi-shell data.
The Structure and Stability of Extended, Inclined Circumplanetary Disk or Ring Systems
Creators: name: Speedie, Jessica
name: Zanazzi, J. J.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: Large dips in the brightness for a number of stars have been observed, for which the tentative explanation is occultation of the star by a transiting circumplanetary disk or ring system. In order for the circumplanetary disk/rings to block the host star's light, the disk must be tilted out of the planet's orbital plane, which poses stability problems due to the radial extent of the disk required to explain the brightness dip durations. This work uses N-body integrations to study the structure and stability of circumplanetary disk/ring systems tilted out of the planet's orbital plane by the spinning planet's mass quadrupole. Simulating the disk as a collection of test particles with orbits initialized near the Laplace surface (equilibrium between tidal force from host star and force from planet's mass quadrupole), we find that many extended, inclined circumplanetary disks remain stable over the duration of the integrations (~3-16 Myr). Two dynamical resonances/instabilities excite the particle eccentricities and inclinations: the Lidov-Kozai effect which occurs in the disk's outer regions, and ivection resonance which occurs in the disk's inner regions. Our work places constraints on the maximum radial extent of inclined circumplanetary disk/ring systems, and shows that gaps present in circumplanetary disks do not necessarily imply the presence of exomoons.
description: 14 pages, 11 figures. Accepted to MNRAS (2020 July 20)