cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Recent developments in histogram libraries
Creators: name: Schreiner, Henry Fredrick
name: Dembinski, Hans Peter
name: Pivarski, Jim
Publisher: name: Zenodo
Year: 2019

description: Boost.Histogram, a header-only C++14 library that provides multi-dimensional histograms and profiles, is now available in Boost-1.70. It is extensible, fast, and uses modern C++ features. Using template meta-programming, the most efficient code path for any given configuration is automatically selected. The library includes key features designed for the particle physics community, such as optional under- and overflow bins, weighted increments, reductions, growing axes, thread-safe filling, and memory-efficient counters with high-dynamic range. Python bindings for Boost.Histogram are being developed in the Scikit-HEP project to provide a fast, easy-to-install package as a backend for other Python libraries and for advanced users to manipulate histograms. Versatile and efficient histogram filling, effective manipulation, multithreading support, and other features make this a powerful tool. This library has also driven package distribution efforts in Scikit-HEP, allowing binary packages hosted on PyPI to be available for a very wide variety of platforms. Two other libraries fill out the remainder of the Scikit-HEP Python histogramming effort. Aghast is a library designed to provide conversions between different forms of histograms, enabling interaction between histogram libraries, often without an extra copy in memory. This enables a user to make a histogram in one library and then save it in another form, such as saving a Boost.Histogram in ROOT. And Hist is a library providing friendly, analyst-targeted syntax and shortcuts for quick manipulations and fast plotting using these two libraries.
Integrated HI emission in galaxy groups and clusters
Creators: name: Ai, Mei
name: Zhu, Ming
name: Fu, Jian
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: The integrated HI emission from hierarchical structures such as groups and clusters of galaxies can be detected by FAST at intermediate redshifts. Here we propose to use FAST to study the evolution of the global HI content of clusters and groups over cosmic time by measuring their integrated HI emissions. We use the Virgo cluster as an example to estimate the detection limit of FAST, and have estimated the integration time to detect a Virgo type cluster at different redshifts (from z=0.1 to z=1.5). We have also employed a semi-analytic model (SAM) to simulate the evolution of HI contents in galaxy clusters. Our simulations suggest that the HI mass of a Virgo-like cluster could be 2-3 times higher and the physical size could be more than 50\% smaller when redshift increases from z=0.3 to z=1. Thus the integration time could be reduced significantly and gas rich clusters at intermediate redshifts can be detected by FAST in less than 2 hour of integration time. For the local universe, we have also used SAM simulations to create mock catalogs of clusters to predict the outcomes from FAST all sky surveys. Comparing with the optically selected catalogs derived by cross matching the galaxy catalogs from the SDSS survey and the ALFALFA survey, we find that the HI mass distribution of the mock catalog with 20 second of integration time agrees well with that of observations. However, the mock catalog with 120 second integration time predicts much more groups and clusters that contains a population of low mass HI galaxies not detected by the ALFALFA survey. Future deep HI blind sky survey with FAST would be able to test such prediction and set constraints to the numerical simulation models. Observational strategy and sample selections for the future FAST observations of galaxy clusters at high redshifts are also discussed.
description: 18 pages,5 figures
Newtonian and Pseudo-Newtonian Hill Problem
Creators: name: Steklain, A. F.
name: Letelier, P. S.
Publisher: name: arXiv
Year: 2006
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: A pseudo-Newtonian Hill problem based on the Paczynski-Wiita pseudo-Newtonian potential that reproduces general relativistic effects is presented and compared with the usual Newtonian Hill problem. Poincare maps, Lyapunov exponents and fractal escape techniques are employed to study bounded and unbounded orbits. In particular we consider the systems composed by Sun, Earth and Moon and composed by the Milky Way, the M2 cluster and a star. We find that some pseudo-Newtonian systems - including the M2 system - are more stable than their Newtonian equivalent.
description: 12 pages, 4 figures, 1 table
Triangle singularity enhancing isospin violation in $\bar B_s^0 \to J/ψπ^0 f_0(980)$
Creators: name: Liang, Wei-Hong
name: Sakai, S.
name: Xie, Ju-Jun
name: Oset, E.
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: We perform calculations for the $\bar B_s^0 \to J/ψπ^0 f_0(980)$ and $\bar B_s^0 \to J/ψπ^0 a_0(980)$ reactions, showing that the first one is isospin-suppressed while the second one is isospin-allowed. The reaction proceeds via a triangle mechanism, with $\bar B_s^0 \to J/ψK^* \bar K +c.c.$, followed by the decay $K^* \to Kπ$ and a further fusion of $K\bar K$ into the $f_0(980)$ or $a_0(980)$. We show that the mechanism develops a singularity around the $π^0 f_0(980)$ or $π^0 a_0(980)$ invariant mass of 1420 MeV where the $π^0 f_0$ and $π^0 a_0$ decay modes are magnified and also the ratio of $π^0 f_0$ to $π^0 a_0$ production. Using experimental information for the $\bar B_s^0 \to J/ψK^* \bar K +c.c.$ decay, we are able to obtain absolute values for the reactions studied which fall into the experimentally accessible range. The reactions proposed and the observables evaluated, when contrasted with actual experiments should be very valuable to obtain information on the nature of the low lying scalar mesons.
description: 19 pages, 9 figures; V2: improved discussions in sections II and III, version to appear in Chin. Phys. C
Analysis code for " Vocalization modulates the mouse auditory cortex even in the absence of hearing"
Creators: name: Harmon, Thomas
Publisher: name: Zenodo
Year: 2024

description: This upload contains two scripts (Vocal_modulation.mat and Locomotion_Odor_modulation.mat) used to identify modulated neurons and align neural calcium data and behavioral data to sound stimuli or behavioral events.  The scripts operated on the following input data:

Input calcium data: background-corrected fluorescence matrix (# neurons x # frames)Input behavioral data vectors (length = # of fluorescence frames):

instantaneous speed (cm/s)

instantaneous vocal rate (syllables/s)

female distance (cm)

pupil size (% of maximum)

jaw, shoulder, whisker, and snout movement vectors (% of pixels).

sound bandpower of audio recording across various ranges (36-96 kHz).

The outcomes of shuffling procedure and the aligned neural and behavioral data were saved in several MATLAB tables, which are included here in Neural_behavioral_dataset.mat. 

The third script (Figures_and_stats.mat) is a compilation of scripts used to generate panels for the primary and supplementary figures of the paper, as well as run statistical tests. These scripts operate on the matlab data tables included.
A fully unprivileged CernVM-FS
Creators: name: Blomer, Jakob
name: Dykstra, Dave
name: Ganis, Gerardo
name: Popescu, Radu
Publisher: name: Zenodo
Year: 2019

description: The CernVM File System provides the software and container distribution backbone for most High Energy and Nuclear Physics experiments. It is implemented as a file system in user-space (fuse) module, which permits its execution without any elevated privileges. Yet, mounting the file system in the first place is handled by a privileged suid helper program that is installed by the fuse package on most systems. The privileged nature of the mount system call is a serious hindrance to running CernVM-FS on opportunistic resource and supercomputers. Fortunately, recent developments in the Linux kernel and in the fuse user-space libraries enabled fully unprivileged mounting for fuse file systems (as of RHEL 8), or at least outsourcing the privileged mount system call to a custom, external process. This opens the door to several, very appealing new ways to use CernVM-FS, such as a generally usable "super pilot" consisting of the pilot code bundled with Singularity and CernVM-FS, or the on-demand instantiation of unprivileged, ephemeral containers to publish new CernVM-FS content from anywhere. In this contribution, we discuss the integration of these new Linux features with CernVM-FS and show some of its most promising, new applications.
Additional file 1 of Measuring undergraduate evolution learning using the CANS: psychometric strengths and limitations
Creators: name: Zuckerman, Austin L.
name: Sbeglia, Gena
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Supplementary Material 1
Topological susceptibility at zero and finite $T$ in SU(3) Yang-Mills theory
Creators: name: Allés, B.
name: D'Elia, M.
name: Di Giacomo, A.
Publisher: name: arXiv
Year: 1996
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We determine the topological susceptibility $χ$ at T=0 in pure SU(3) gauge theory and its behaviour at finite $T$ across the deconfining transition. We use an improved topological charge density operator. $χ$ drops sharply by one order of magnitude at the deconfining temperature $T_c$.
description: Recently appeared erratum added as an "Appendix" to the original paper
Additional file 1: of Mecasin treatment in patients with amyotrophic lateral sclerosis: study protocol for a randomized controlled trial
Creators: name: Sungha Kim
name: Kim, Jae
name: Son, Mi
name: Dongwoung Kim
name: Bongkeun Song
name: Ilhong Son
name: Kang, Hyung
name: Jongdeok Lee
name: Sungchul Kim
Publisher: name: figshare
Year: 2018
Subjects: subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: SPIRIT 2013 Checklist: Recommended items to address in a clinical trial protocol and related documents*. (DOC 125 kb)
Separability Criterion for Density Matrices
Creators: name: Peres, Asher
Publisher: name: arXiv
Year: 1996
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: A quantum system consisting of two subsystems is separable if its density matrix can be written as $ρ=\sum_A w_A\,ρ_A'\otimesρ_A''$, where $ρ_A'$ and $ρ_A''$ are density matrices for the two subsytems. In this Letter, it is shown that a necessary condition for separability is that a matrix, obtained by partial transposition of $ρ$, has only non-negative eigenvalues. This criterion is stronger than Bell's inequality.
description: 6 pages LaTeX, contains a simplified derivation and two new examples
Additional file 2 of Micro-RNA-186-5p inhibition attenuates proliferation, anchorage independent growth and invasion in metastatic prostate cancer cells
Creators: name: Jones, Dominique
name: M. Schmidt
name: Suman, Suman
name: Hobbing, Katharine
name: Shirish Barve
name: Gobejishvili, Leila
name: Brock, Guy
name: Klinge, Carolyn
name: Shesh Rai
name: Park, Jong
name: Clark, Geoffrey
name: Agarwal, Rajesh
name: LaCreis Kidd
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Hematology

description: Table S2. Differentially expressed human miRNAs in serum from PCa patients. Relative to disease-free individuals, human miRNAs were down-regulated (fold change ≤ − 1.5) and up-regulated (fold change ≥1.5) in PCa patients when compared to disease-free individuals based on Taqman Human MicroRNA Array data (p-value ≤0.05). Global normalization of miRNA profiles identified 26 differentially expressed human miRNAs (9 down-regulated and 17 up-regulated) in the serum from patients diagnosed with tumor stage I (n = 5), III (n = 5) and IV (n = 5) relative to disease-free individuals (n = 5). miRNAs (miRs-106b-5p, − 186-5p, −302b-3p, − 342-3p, −520e, − 885-5p), highlighted in gray, represent targets that survived multiple hypothesis testing (FDR p-value ≤0.05). (DOCX 19 kb)
Magnetic Field Decay and Period Evolution of Anomalous X-Ray Pulsars in the Context of Quark Stars
Creators: name: Niebergal, Brian
name: Ouyed, Rachid
name: Leahy, Denis
Publisher: name: arXiv
Year: 2006
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We discuss a model wherein soft gamma-ray repeaters (SGRs), anomalous X-ray pulsars (AXPs), and radio quiet isolated neutron stars (RQINSs) are all compact objects exhibiting superconductivity, namely color-flavor locked quark stars. In particular we calculate the magnetic field decay due to the expulsion of spin-induced vortices from the star's superfluid-superconducting interior, and the resultant spin-down rate. We find that, for initial parameters characteristic of AXPs/SGRs ($10^{13}
description: 4 pages, 4 figures, accepted to ApJ Letters
MOESM7 of Bronze Age meat industry: ancient mitochondrial DNA analyses of pig bones from the prehistoric salt mines of Hallstatt (Austria)
Creators: name: Hammer, Sabine
name: Tautscher, Barbara
name: Pucher, Erich
name: Kowarik, Kerstin
name: Reschreiter, Hans
name: Kern, Anton
name: Haring, Elisabeth
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 7. Phylogenetic Reconstruction IIâ Maximum Likelihood fits of 24 different nucleotide substitution models. Summarizing table for the models with the lowest BIC scores (Bayesian Information Criterion) that are considered to describe the substitution pattern the best.
Global bounds on stable polynomials
Creators: name: Knese, Greg
Publisher: name: arXiv
Year: 2017
Subjects: subject: Complex Variables (math.CV)
subject: Classical Analysis and ODEs (math.CA)
subject: Functional Analysis (math.FA)
subject: FOS: Mathematics
subject: Primary 32A60, Secondary 32A15, 30A64, 30C15, 30D15

description: A classical inequality of Szász bounds polynomials with no zeros in the upper half plane entirely in terms of their first few coefficients. Borcea-Brändén generalized this result to several variables as a piece of their characterization of linear maps on polynomials preserving stability. In this paper, we improve Szász's original inequality, use determinantal representations to prove Szász type inequalities in two variables, and then prove that one can use the two variable inequality to prove an inequality for several variables.
description: 17 pages
Additional file 1: of Population-level distribution and putative immunogenicity of cancer neoepitopes
Creators: name: Wood, Mary
name: Mayur Paralkar
name: Mihir Paralkar
name: Nguyen, Austin
name: Struck, Adam
name: Ellrott, Kyle
name: Margolin, Adam
name: Abhinav Nellore
name: Thompson, Reid
Publisher: name: figshare
Year: 2018
Subjects: subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Supplementary Information. Contains Supplementary Figures S1-S8 and Supplementary Tables S1-S4, S6-S7, and the mathematical representation of our linear model predicting neoepitope-specific immune response. (DOCX 623Â kb)
Overcoming the time limitation in Molecular Dynamics simulation of crystal nucleation: a persistent-embryo approach
Creators: name: Sun, Yang
name: Song, Huajing
name: Zhang, Feng
name: Yang, Lin
name: Ye, Zhuo
name: Mendelev, Mikhail I.
name: Wang, Cai-Zhuang
name: Ho, Kai-Ming
Publisher: name: arXiv
Year: 2017
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: The crystal nucleation from liquid in most cases is too rare to be accessed within the limited timescales of the conventional molecular dynamics (MD) simulation. Here, we developed a "persistent embryo" method to facilitate crystal nucleation in MD simulations by preventing small crystal embryos from melting using external spring forces. We applied this method to the pure Ni case for a moderate undercooling where no nucleation can be observed in the conventional MD simulation, and obtained nucleation rate in good agreement with the experimental data. Moreover, the method is applied to simulate an even more sluggish event: the nucleation of the B2 phase in a strong glass-forming Cu-Zr alloy. The nucleation rate was found to be 8 orders of magnitude smaller than Ni at the same undercooling, which well explains the good glass formability of the alloy. Thus, our work opens a new avenue to study solidification under realistic experimental conditions via atomistic computer simulation.
description: 12 pages, 3 figures
NELIOTA: First temperature measurement of lunar impact flashes
Creators: name: Bonanos, A. Z.
name: Avdellidou, C.
name: Liakos, A.
name: Xilouris, E. M.
name: Dapergolas, A.
name: Koschny, D.
name: Bellas-Velidis, I.
name: Boumis, P.
name: Charmandaris, V.
name: Fytsilis, A.
name: Maroussis, A.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: We report the first scientific results from the NELIOTA (NEO Lunar Impacts and Optical TrAnsients) project, which has recently begun lunar monitoring observations with the 1.2-m Kryoneri telescope. NELIOTA aims to detect faint impact flashes produced by near-Earth meteoroids and asteroids and thereby help constrain the size-frequency distribution of near-Earth objects in the decimeter to meter range. The NELIOTA setup, consisting of two fast-frame cameras observing simultaneously in the $R$ and $I-$bands, enables - for the first time - direct analytical calculation of the flash temperatures. We present the first 10 flashes detected, for which we find temperatures in the range ~1,600-3,100 K, in agreement with theoretical values. Two of these flashes were detected on multiple frames in both filters and therefore yield the first measurements of the temperature drop for lunar flashes. In addition, we compute the impactor masses, which range between ~100 g and ~50 kg.
description: 6 pages, 1 figure, 1 table, accepted for publication in A&A
title: 01_0520
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
Additional file 2: of Improving social accountability processes in the health sector in sub-Saharan Africa: a systematic review
Creators: name: Danhoundo, Georges
name: Khalidha Nasiri
name: Wiktorowicz, Mary
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Table S2. Quality of Included Studies. A summary of our quality assessment of the 14 studies included in our review. (DOCX 19Â kb)
Enhanced Photon Traps for Hyper-Kamiokande
Creators: name: Rott, Carsten
name: In, Seongjin
name: Retière, Fabrice
name: Gumplinger, Peter
Publisher: name: arXiv
Year: 2017
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Instrumentation and Detectors (physics.ins-det)
subject: FOS: Physical sciences

description: Hyper-Kamiokande, the next generation large water Cherenkov detector in Japan, is planning to use approximately 80,000 20-inch photomultiplier tubes (PMTs). They are one of the major cost factors of the experiment. We propose a novel enhanced photon trap design based on a smaller and more economical PMT in combination with wavelength shifters, dichroic mirrors, and broadband mirrors. GEANT4 is utilized to obtain photon collection efficiencies and timing resolution of the photon traps. We compare the performance of different trap configurations and sizes. Our simulations indicate an enhanced photon trap with a 12-inch PMT can match a 20-inch PMTs collection efficiency, however at a cost of reduced timing resolution. The photon trap might be suitable as detection module for the outer detector with large photo coverage area.
description: 17 pages ; 11 figures ; 5 tables
Additional file 1 of Micro-RNA-186-5p inhibition attenuates proliferation, anchorage independent growth and invasion in metastatic prostate cancer cells
Creators: name: Jones, Dominique
name: M. Schmidt
name: Suman, Suman
name: Hobbing, Katharine
name: Shirish Barve
name: Gobejishvili, Leila
name: Brock, Guy
name: Klinge, Carolyn
name: Shesh Rai
name: Park, Jong
name: Clark, Geoffrey
name: Agarwal, Rajesh
name: LaCreis Kidd
Publisher: name: figshare
Year: 2018
Subjects: Biochemistry
Medicine
Cell Biology
Cancer

description: Table S1. De-identified demographic and clinico-pathological data. Clinical data and serum from 15 men diagnosed with prostate cancer and five disease-free individuals were obtained from the BioServe Biotechnologies Biorepository (Beltsville, MD). Subjects were self-identified as European American males. There were no significant differences in median age between cases and controls (p = 0.726). Among men diagnosed with prostate cancer, 60% were diagnosed with adenocarcinoma, 66.7% were smokers, and 73.3% received two or more therapies. Relative to controls, cases had higher median serum PSA level (ng/ml) (p = 0.048) and BMI (p = 0.225) values. (DOCX 63 kb)
MOESM6 of Bronze Age meat industry: ancient mitochondrial DNA analyses of pig bones from the prehistoric salt mines of Hallstatt (Austria)
Creators: name: Hammer, Sabine
name: Tautscher, Barbara
name: Pucher, Erich
name: Kowarik, Kerstin
name: Reschreiter, Hans
name: Kern, Anton
name: Haring, Elisabeth
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 6. Phylogenetic Reconstruction Iâ estimates of evolutionary divergence between sequences. Distance matrix shows the number of base differences per site (p distances; Nei and Kumar 2000) between 42 DNA sequences (length of alignment 637Â bp).
Giant magnon-like solution in Sch_5 x S^5
Creators: name: Ahn, Changrim
name: Bozhilov, Plamen
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In this paper we have found a classical giant magnon-like solution with both infinite and finite angular momentum moving in Sch_5 x S^5 with B-field, which is believed to be dual to dipole-deformed N=4 super Yang-Mills theory. This string state propagates as a point particle in non-trivial subspace of the Sch_5 space but shows a giant magnon-like property in the S^2 subspace. We derive the energy-momentum dispersion relations and their finite-size correction for the case of finite but large angular momentum.
description: 12 pages; new results on finite-size corrections are added
Application of approximation theory by nonlinear manifolds in Sturm-Liouville inverse problems
Creators: name: Irigoyen, Amadeo
Publisher: name: arXiv
Year: 2006
Subjects: subject: Mathematical Physics (math-ph)
subject: Functional Analysis (math.FA)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: We give here some negative results in Sturm-Liouville inverse theory, meaning that we cannot approach any of the potentials with $m+1$ integrable derivatives on $\mathbb{R}^+$ by an $ω$-parametric analytic family better than order of $(ω\lnω)^{-(m+1)}$. Next, we prove an estimation of the eigenvalues and characteristic values of a Sturm-Liouville operator and some properties of the solution of a certain integral equation. This allows us to deduce from [Henkin-Novikova] some positive results about the best reconstruction formula by giving an almost optimal formula of order of $ω^{-m}$.
description: 40 pages
Additional file 1 of GCN2-SLC7A11 axis coordinates autophagy, cell cycle and apoptosis and regulates cell growth in retinoblastoma upon arginine deprivation
Creators: name: Wang, Dan
name: Chu, Wai Kit
name: Yam, Jason Cheuk Sing
name: Pang, Chi Pui
name: Leung, Yun Chung
name: Shum, Alisa Sau Wun
name: Chan, Sun-On
Publisher: name: figshare
Year: 2024
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Supplementary Material 1: Supplementary Figure S1. Analysis of cell cycle arrest and apoptosis in retinoblastoma upon arginine deprivation. A. Representative flow plots of propidium iodide (PI) assessment of the cell cycle phase distribution in Rb cell lines cultured under control and arginine-free conditions. B. Representative flow plots of PI and FITC-annexin V assessment of cell apoptosis distribution in Rb cell lines cultured under control and arginine-free conditions.
Additional file 2 of GCN2-SLC7A11 axis coordinates autophagy, cell cycle and apoptosis and regulates cell growth in retinoblastoma upon arginine deprivation
Creators: name: Wang, Dan
name: Chu, Wai Kit
name: Yam, Jason Cheuk Sing
name: Pang, Chi Pui
name: Leung, Yun Chung
name: Shum, Alisa Sau Wun
name: Chan, Sun-On
Publisher: name: figshare
Year: 2024
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Supplementary Material 2: Supplementary Figure S2. mTOR signaling was inhibited, whereas the GCN2 pathway was activated in retinoblastoma upon arginine deprivation. A. Immunoblot analyses showing the inhibition of mTOR signaling in Rb cells upon arginine deprivation. B. Immunoblot analyses showing activation of the GCN2 pathway in Rb cells upon arginine deprivation.
Additional file 3 of GCN2-SLC7A11 axis coordinates autophagy, cell cycle and apoptosis and regulates cell growth in retinoblastoma upon arginine deprivation
Creators: name: Wang, Dan
name: Chu, Wai Kit
name: Yam, Jason Cheuk Sing
name: Pang, Chi Pui
name: Leung, Yun Chung
name: Shum, Alisa Sau Wun
name: Chan, Sun-On
Publisher: name: figshare
Year: 2024
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Supplementary Material 3: Supplementary Figure S3. Regulation of GCN2 and mTOR signaling in GCN2-knockdown cells upon arginine deprivation. A. Immunoblot analyses showing the activation of GCN2 signaling in GCN2-knockdown Rb cells upon arginine deprivation. B. Immunoblot analyses showing the inhibition of mTOR signaling in GCN2-knockdown Rb cells upon arginine deprivation.
Improving Sustainable Development Outcomes through Best Management Practices
Creators: Ramirez, Byron
Publisher: name: Columbia University
Year: 2014
Subjects: subject: Best management practices (Pollution prevention)
subject: Economic development projects--Management
subject: Sustainable development--Evaluation
subject: Sustainability
subject: Sociology
subject: FOS: Sociology

description: Over the last several decades the world has undergone several economic, political, environmental, and cultural changes.  Society is faced with countless challenges that surround sustainable development.  Progress has been made with respect to world poverty, technological development, and environmental awareness.  However, we have an opportunity to improve the leadership, planning, implementation, and monitoring of sustainable development projects.  Notwithstanding having better technology and increased access to more data and information, we are still not able to optimize sustainable development decisions.  This paper addresses a few critical aspects of strategic management and some resulting challenges faced by policy makers, managers, and implementers of sustainable development projects who come from the private sector, public sector and NGOs.  The paper offers some managerial recommendations on how to enhance the leadership, planning, implementation, and monitoring of sustainable development projects.
Additional file 4 of GCN2-SLC7A11 axis coordinates autophagy, cell cycle and apoptosis and regulates cell growth in retinoblastoma upon arginine deprivation
Creators: name: Wang, Dan
name: Chu, Wai Kit
name: Yam, Jason Cheuk Sing
name: Pang, Chi Pui
name: Leung, Yun Chung
name: Shum, Alisa Sau Wun
name: Chan, Sun-On
Publisher: name: figshare
Year: 2024
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Supplementary Material 4: Supplementary Figure S4. Regulation of GCN2 and mTOR signaling in SLC7A11-knockdown cells upon arginine deprivation. A. Immunoblot analyses showing the activation of GCN2 signaling in SLC7A11-knockdown Rb cells upon arginine deprivation. B. Immunoblot analyses showing the inhibition of mTOR signaling in SLC7A11-knockdown Rb cells upon arginine deprivation. C. q-PCR analysis: COX-2, ACSL4, GPX4, and FTH1 expression levels in SLC7A11-knockdown Y79 and WERI-Rb-1 cells upon arginine deprivation.
Preconditioned wire array Z-pinches driven by a double pulse current generator
Creators: name: Wu, Jian
name: Lu, Yihan
name: Li, Xingwen
name: Sun, Fengju
name: Jiang, Xiaofeng
name: Wang, Zhiguo
name: Zhang, Daoyuan
name: Qiu, Aici
Publisher: name: arXiv
Year: 2017
Subjects: subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: Suppressing of the core-corona structures shows a strong potential as a new breakthrough in the X-ray power production of the wire array Z-pinches. In this letter, the demonstration of suppressing the core-corona structures and its ablation using a novel double pulse current generator "Qin-1" facility is presented. The "Qin-1" facility coupled a ~10 kA 20 ns prepulse generator to a ~ 1 MA 170 ns main current generator. Driven by the prepulse current, the two aluminum wire array were mostly heated to gaseous state rather than the core-corona structures, and the implosion of the aluminum vapors driven by the main current showed no ablation, and no trailing mass. The seeds for the MRT instability formed from the inhomogeneous ablation were suppressed, however, the magneto Rayleigh-Taylor instability during the implosion was still significant and further researches on the generation and development of the magneto Rayleigh-Taylor instabilities of this gasified wire array are needed.
description: 7 pages, 5 figures
MOESM3 of Monitoring of patients treated with lithium for bipolar disorder: an international survey
Creators: name: M. Nederlof
name: E. Heerdink
name: A. Egberts
name: I. Wilting
name: L. Stoker
name: R. Hoekstra
name: R. Kupka
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Additional file 3: Appendix S3. Lithium survey.
Scaling-Up Sustainable Renewable Energy Generation from Municipal Solid Waste in the African Continent: Lessons from eThekwini, South Africa
Creators: Gumbo, Trynos
Publisher: name: Columbia University
Year: 2014
Subjects: Renewable energy sources
Refuse and refuse disposal
Power resources
Sustainability

description: The triple processes of urbanisation, industrialisation and globalisation are positively correlated with municipal solid waste generation and energy consumption in all the world urban centres. Heavy reliance on fossil fuels in most world cities has contributed not only to new challenges of global warming and climate change, but also to astronomic increases and volatility in the prices of energy sources. Africa has not been spared from the shortages of energy and climate change concerns as it has not only very low oil reserves but also depends heavily on finite and environmental unfriendly coal resources; thus making the need for innovations and rethinking in renewable energy generation more urgent than ever. It has repeatedly been observed that the African continent is endowed with several renewable energy sources that range from solar, hydro, municipal solid waste and wind. This article discusses the experiences of converting waste to energy in eThekwini municipality, one of the metropolitan cities of South Africa and also highlights prospects of implementing the same experiences in other African countries. The study unearthed cutting-edge innovations by the Department of Cleansing and Solid Waste of eThekwini municipality that adopted modern municipal solid waste management and treatment systems. For almost a decade now, the municipality has demonstrated to the wholly of the continent and the world at large that it is possible for African cities to achieve the twin objectives of generating clean renewable energy sources that contributes to economic development at the same time reducing urban social and environmental problems associated with improper disposal of waste, a common blot on the African city-landscape. It also reveals that there exist great opportunities to improve waste management, financial investments, technological take-up and skills sets to support the continent’s green energy revolution in the African Continent.
The Food Crisis in Ethiopia and Egypt: Contrasting Hydrological and Economic Barriers to Development
Creators: Stokes, Leah
Scozzaro, A. Tianna
Haller, Jennifer
Publisher: name: Columbia University
Year: 2010
Subjects: Water-supply
Food security
Water resources development--Management
Regional planning
Sustainability

description: Water scarcity is often underemphasized in analyses of the global food crisis. Ethiopia and Egypt are compared in order to understand the differences between physical and economic water scarcity and their impacts on food security. Water availability in Egypt is low compared with Ethiopia; however, irrigation is widely practiced in Egypt, supporting a variety of crops, including water intensive species, and ensuring food security.  In Ethiopia, lack of water infrastructure, such as irrigation and catchments and a lack of institutional capacity limit food security. In addition, Ethiopia’s GDP is strongly linked to agricultural exports. As a result, Ethiopia’s economy is tightly coupled with rainfall. The adaptation Egypt has taken to overcome physical water scarcity is in stark contrast with the lack of institutional capacity Ethiopia has to harness its water abundance. The result is chronic food insecurity in Ethiopia, which Egypt has been able to overcome, at least in the short term. Climate change may pose additional stressors for water availability in both countries. Solutions to overcome food insecurity in Ethiopia include irrigation, growing less water intensive crops and improving governance and climate information access.
Metabolic Hyperactivity of the Medial Posterior Parietal Lobes in Psychogenic Tremor
Creators: Hedera, Peter
Publisher: name: Columbia University
Year: 2012
Subjects: subject: Neurosciences
subject: FOS: Clinical medicine

description: Background: The pathophysiology of psychogenic movement disorders, including psychogenic tremor (PT), is only emerging. Case Report: This is a single case report of a patient who met diagnostic criteria for PT. He underwent positron emission tomography (PET) of brain with 18F-deoxyglucose at resting state. His PET study showed symmetrically increased 18F-deoxyglucose uptake in both posterior medial parietal lobes. There was no corresponding abnormality on structural imaging. Discussion: Hypermetabolism of the medial aspects of posterior parietal lobes bilaterally may reflect abnormal activity of sensory integration that is important in the pathogenesis of PT. This further supports the idea that non-organic movement disorders may be associated with detectable functional brain abnormalities.
Power-law scaling of plasma pressure on laser-ablated tin microdroplets
Creators: name: Kurilovich, Dmitry
name: Basko, Mikhail M.
name: Kim, Dmitrii A.
name: Torretti, Francesco
name: Schupp, Ruben
name: Visschers, Jim C.
name: Scheers, Joris
name: Hoekstra, Ronnie
name: Ubachs, Wim
name: Versolato, Oscar O.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: The measurement of the propulsion of metallic microdroplets exposed to nanosecond laser pulses provides an elegant method for probing the ablation pressure in dense laser-produced plasma. We present the measurements of the propulsion velocity over three decades in the driving Nd:YAG laser pulse energy, and observe a near-perfect power law dependence. Simulations performed with the RALEF-2D radiation-hydrodynamic code are shown to be in good agreement with the power law above a specific threshold energy. The simulations highlight the importance of radiative losses which significantly modify the power of the pressure scaling. Having found a good agreement between the experiment and the simulations, we investigate the analytic origins of the obtained power law and conclude that none of the available analytic theories is directly applicable for explaining our power exponent.
description: 11 pages, 8 figures
Cerebellar Ataxia from Multiple Potential Causes: Hypothyroidism, Hashimoto's Thyroiditis, Thalamic Stimulation, and Essential Tremor
Creators: Shneyder, Natalya
Lyons, Mark K.
Evidente, Virgilio Gerald H.
Driver-Dunckley, Erika
Publisher: name: Columbia University
Year: 2012
Subjects: subject: Neurosciences
subject: FOS: Clinical medicine

description: Background: Both hypothyroidism and Hashimoto's thyroiditis (HT) can rarely be associated with cerebellar ataxia. Severe essential tremor (ET) as well as bilateral thalamic deep brain stimulation (DBS) may lead to subtle cerebellar signs. Case Report: We report a 74-year-old male with hypothyroidism and a 20-year history of ET who developed cerebellar ataxia after bilateral thalamic DBS. Extensive workup revealed elevated thyroid stimulating hormone and thyroperoxidase antibody titers confirming the diagnosis of HT. Discussion: Our case demonstrates multiple possible causes of cerebellar ataxia in a patient, including hypothyroidism, HT, chronic ET, and bilateral thalamic DBS. Counseling of patients may be appropriate when multiple risk factors for cerebellar ataxia coexist in one individual.
Additional file 1 of Alveolar compartmentalization of inflammatory and immune cell biomarkers in pneumonia-related ARDS
Creators: name: Bendib, Inès
name: Beldi-Ferchiou, Asma
name: Schlemmer, Frédéric
name: Surenaud, Mathieu
name: Maitre, Bernard
name: Plonquet, Anne
name: Carteaux, Guillaume
name: Razazi, Keyvan
name: Godot, Veronique
name: Hüe, Sophie
name: Mekontso Dessap, Armand
name: de Prost, Nicolas
Publisher: name: figshare
Year: 2021
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Computational Biology

description: Additional file 1. Tables S1 to S5, Figures S1 to S4.
Additional file 1: of Improving social accountability processes in the health sector in sub-Saharan Africa: a systematic review
Creators: name: Danhoundo, Georges
name: Khalidha Nasiri
name: Wiktorowicz, Mary
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: Computational Biology

description: Table S1. Characteristics of Included Studies. A summary of the 14 studies included in our review including study design, facilitator(s) and description of accountability initiative, outcome measure(s), key outcomes, and enabling and limiting factors. (DOCX 32Â kb)
The Red Zone: Why Beijing’s air pollution crisis is more complicated than you think
Creators: Schipani, Samantha
Publisher: name: Columbia University
Year: 2014
Subjects: Air--Pollution--Economic aspects
Community development, Urban
Air--Pollution--Environmental aspects
Climatic changes
Sustainability

description: Beijing's air pollution crisis is immediately pressing, but multivariate analysis of the urban area reveal how complicated the issue is environmentally and economically.
The ‘Necessity’ of Democracy for Sustainable Development: A Comparison between the USA and Cuba
Creators: Rand, Marcus
Publisher: name: Columbia University
Year: 2014
Subjects: subject: Sustainable development
subject: Democracy
subject: Political science
subject: FOS: Political science
subject: Public policy (Law)

description: Democracy is associated with, and often stated as a condition for, sustainable development. A comparison of Cuba and the United States shows that sustainable development can exist and grow in countries that do not possess a democratic form of governance. The results of the comparison indicate that, to promote sustainable development on a wider scale, it is necessary to focus on the values embedded in the dignity of humankind. To promote such values, it is imperative to present sustainable development as a set of values linked to the rights and dignity of humankind, not as the sole offspring of democratic ideology.
Vacuum State of Lattice Gauge Theory with Fermions in 2+1 Dimensions
Creators: name: Abe, Hideyuki
Publisher: name: arXiv
Year: 1996
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: We investigate the vacuum state of the lattice gauge theory with fermions in 2+1 dimensions. The vacuum in the Hermite form for the fermion part is obtained; the vacuum in the unitary form has been proposed by Luo and Chen. It is shown that the Hermite vacuum has a lower energy than the unitary one through the variational method.
description: 16 pages, 5 embedded PS figures, LaTeX with special style
Additional file 1 of CRISPR-Cas system positively regulates virulence of Salmonella enterica serovar Typhimurium
Creators: name: Sharma, Nandita
name: Das, Ankita
name: Nair, Abhilash Vijay
name: Sethi, Palash
name: Negi, Vidya Devi
name: Chakravortty, Dipshikha
name: Marathe, Sandhya Amol
Publisher: name: figshare
Year: 2024
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Environmental Sciences not elsewhere classified
subject: Science Policy
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Supplementary Material 1
Transport through Andreev bound states in a Weyl semimetal quantum dot
Creators: name: Mukherjee, Dibya Kanti
name: Rao, Sumathi
name: Kundu, Arijit
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We study transport through a Weyl semimetal quantum dot sandwiched between an $s$-wave superconductor and a normal lead. The conductance peaks at regular intervals and exhibits double periodicity with respect to two characteristic frequencies of the system, one that originates from Klein tunneling in the system and the other coming from the chiral nature of the excitations. Using a scattering matrix approach as well as a lattice simulation, we demonstrate the universal features of the conductance through the system and discuss the feasibility of observing them in experiments.