cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 4: of Independent modulation of individual genomic component transcription and a cis-acting element related to high transcriptional activity in a multipartite DNA virus
Creators: name: Nai-Tong Yu
name: Xie, Hui-Min
name: Zhang, Yu-Liang
name: Wang, Jian-Hua
name: Zhongguo Xiong
name: Liu, Zhi-Xin
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology
subject: Computational Biology

description: Figure S1. Optimization of annealing temperatures for each component of BBTV. (PDF 99 kb)
ESFRI Science Clusters Position Statement on Expectations and Long-Term Commitment in Open Science
Creators: name: Lamanna, Giovanni
name: Bird, Ian
name: Petzold, Andreas
name: Asmi, Ari
name: Brus, Magdalena
name: Blomberg, Niklas
name: Räß, Michael
name: Dimper, Rudolf
name: Gotz, Andrew
name: Dekker, Ron
Publisher: name: Zenodo
Year: 2021
Subjects: Research infrastructure
Science cluster
European Open Science Cloud
ESFRI

description: THE SCIENCE CLUSTERS are EU collaborative projects that were launched in 2019 to link ESFRI and other world-class Research Infrastructures (RIs) to the European Open Science Cloud (EOSC). The main impacts of the Science Clusters’ work programme concern: the improved access of researchers to data, tools and resources, leading to new insights and innovation for data-driven science both within and beyond the context of the domains in which the clusters are rooted; the creation of a cross-border open innovation environment for FAIR (Findable, Accessible, Interoperable and Reusable) data management for economies of scale, to develop synergies and rise the efficiency and productivity of researchers through open-science standards and thematic services; the enhanced co-developments to foster the cross-domain interoperability central to the EOSC goal. The Science Clusters are an integral part of EOSC. Their services and outcomes are now forming the core of the emerging EOSC fabric. As important partners of EOSC, Science Clusters contribute to its development and its implementation process. Importantly, the Science Clusters form a natural collaboration between the ESFRI RIs’ management boards partners in the clusters. As EOSC matures and begins delivering data and services for European research, a discussion is needed to stimulate the Open Science practices, cross-domain interoperability and long-term coordination of the scientific communities covered by the five Science Clusters. This position paper contributes formally to explain the urgent need of EC to support a longer-term role of the five Science Clusters to provide content to the EOSC, to enhance researchers’ involvement in Open Science and to suggest potential cooperative pathways in the Horizon-Europe framework and along with the EOSC Association roadmap. This paper is aimed at highlighting: Expectations of the clusters and the concerned research communities, pointing out a common structured vision and a series of suggestions for the future. A more detailed analysis from each cluster, that is provided for completeness.
description: Added an an author missing from the original upload
Brachynus (Aploa) nobilis Dejean 1831
Creators: name: Felix, Ron F. F. L.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Carabidae
Brachynus
Brachynus nobilis

description: Brachynus (Aploa) nobilis Dejean, 1831
 Material examined. YEMEN: SOCOTRA ISLAND: 1 spec., Ras Shuab, mangrove, 14.ii.2000, Wranik leg. (WWCR).
description: Published as part of Felix, Ron F. F. L., 2017, New species and new distributional data on Carabidae (Coleoptera) from the Socotra Archipelago, pp. 41-54 in Acta Entomologica Musei Nationalis Pragae (Acta. Ent. Mus. Natl. Pragae) (Acta. Ent. Mus. Natl. Pragae) 57 on page 51, DOI: 10.1515/aemnp-2017-0106, http://zenodo.org/record/5325863
From Wigner--In{ö}n{ü} Group Contraction to Contractions of Algebraic Structures
Creators: name: Gromov, N. A.
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The development of the notion of group contraction first introduced by E. In{ö}n{ü} and E.P. Wigner in 1953 is briefly reviewed. The fundamental role of the idea of degenerate transformations is stressed. The significance of contractions of algebraic structures for exactly solvable problems of mathematical physics is noticed.
description: 5 pages, Latex. Talk given at Wigner Centennial Conference July 8-12, 2002, P{\'e}cs, Hungary
Chlaenius (Pachydinodes) conformis Dejean 1831
Creators: name: Felix, Ron F. F. L.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Carabidae
Chlaenius
Chlaenius conformis

description: Chlaenius (Pachydinodes) conformis Dejean, 1831
 Material examined. YEMEN: SOCOTRA ISLAND: 2 spec., Firmihin, ii.1999, Wranik leg. (WWCR).
description: Published as part of Felix, Ron F. F. L., 2017, New species and new distributional data on Carabidae (Coleoptera) from the Socotra Archipelago, pp. 41-54 in Acta Entomologica Musei Nationalis Pragae (Acta. Ent. Mus. Natl. Pragae) (Acta. Ent. Mus. Natl. Pragae) 57 on page 51, DOI: 10.1515/aemnp-2017-0106, http://zenodo.org/record/5325863
ESFRI Science Clusters Position Statement on Expectations and Long-Term Commitment in Open Science
Creators: name: Lamanna, Giovanni
name: Bird, Ian
name: Petzold, Andreas
name: Asmi, Ari
name: Brus, Magdalena
name: Blomberg, Niklas
name: Räß, Michael
name: Dimper, Rudolf
name: Gotz, Andrew
name: Dekker, Ron
Publisher: name: Zenodo
Year: 2021
Subjects: Research infrastructure
Science cluster
European Open Science Cloud
ESFRI

description: THE SCIENCE CLUSTERS are EU collaborative projects that were launched in 2019 to link ESFRI and other world-class Research Infrastructures (RIs) to the European Open Science Cloud (EOSC). The main impacts of the Science Clusters’ work programme concern: the improved access of researchers to data, tools and resources, leading to new insights and innovation for data-driven science both within and beyond the context of the domains in which the clusters are rooted; the creation of a cross-border open innovation environment for FAIR (Findable, Accessible, Interoperable and Reusable) data management for economies of scale, to develop synergies and rise the efficiency and productivity of researchers through open-science standards and thematic services; the enhanced co-developments to foster the cross-domain interoperability central to the EOSC goal. The Science Clusters are an integral part of EOSC. Their services and outcomes are now forming the core of the emerging EOSC fabric. As important partners of EOSC, Science Clusters contribute to its development and its implementation process. Importantly, the Science Clusters form a natural collaboration between the ESFRI RIs’ management boards partners in the clusters. As EOSC matures and begins delivering data and services for European research, a discussion is needed to stimulate the Open Science practices, cross-domain interoperability and long-term coordination of the scientific communities covered by the five Science Clusters. This position paper contributes formally to explain the urgent need of EC to support a longer-term role of the five Science Clusters to provide content to the EOSC, to enhance researchers’ involvement in Open Science and to suggest potential cooperative pathways in the Horizon-Europe framework and along with the EOSC Association roadmap. This paper is aimed at highlighting: Expectations of the clusters and the concerned research communities, pointing out a common structured vision and a series of suggestions for the future. A more detailed analysis from each cluster, that is provided for completeness.
We were promised Xanadu! An Infrastructure-Agnostic Model of Hypertext
Creators: name: Voß, Jakob
Publisher: name: Zenodo
Year: 2019
Subjects: hypertext
xanadu
transclusion

description: Poster presented at the 30th ACM Conference on Hypertext and Social Media (HT’19) 17–20 September 2019 Hof, Germany.
Dyschirius (Dyschiriodes) zanzibaricus Chaudoir 1878
Creators: name: Felix, Ron F. F. L.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Carabidae
Dyschirius
Dyschirius zanzibaricus

description: Dyschirius (Dyschiriodes) zanzibaricus Chaudoir, 1878
 Material examined. YEMEN: SOCOTRA ISLAND: 1 spec., Qalansiya, Taisoh, 12.65880N 53.46988E, 67 m., 25.iv.2014, M. Sharaf leg. (KSMA); 1 spec., same data, 33 m, 29.iv.2014, M. Sharaf leg. (KSMA).
description: Published as part of Felix, Ron F. F. L., 2017, New species and new distributional data on Carabidae (Coleoptera) from the Socotra Archipelago, pp. 41-54 in Acta Entomologica Musei Nationalis Pragae (Acta. Ent. Mus. Natl. Pragae) (Acta. Ent. Mus. Natl. Pragae) 57 on page 51, DOI: 10.1515/aemnp-2017-0106, http://zenodo.org/record/5325863
Ulotka DOAJ
Creators: name: Kokot-Kanikuła, Kamila
name: Directory of Open Access Journals
Publisher: name: Zenodo
Year: 2025
Subjects: subject: Open Access Publishing
subject: DOAJ
subject: otwarty dostęp

description: DOAJ to unikalny i obszerny indeks różnorodnych czasopism open access z całego świata, prowadzony przez rosnącą globalną społeczność, zobowiązaną do zapewnienia dostępu online dla wszystkich do wysokiej jakości treści. Ta ulotka opisuje:

Misję i wizję DOAJ

Kto może skorzystać z DOAJ

Jakie czasopisma mogą ubiegać się o włączenie do DOAJ

Jak w DOAJ budujemy zaufanie do czasopism naukowych
Representation learning for automated spectroscopic redshift estimation
Creators: name: Frontera-Pons, Joana
name: Sureau, Florent
name: Moraes, Bruno
name: Bobin, Jérôme
name: Abdalla, Filipe
Publisher: name: arXiv
Year: 2019
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: Determining the radial positions of galaxies up to a high accuracy depends on the correct identification of salient features in their spectra. Classical techniques for spectroscopic redshift estimation make use of template matching with cross-correlation. These templates are usually constructed from empirical spectra or simulations based on the modeling of local galaxies. We propose two new spectroscopic redshift estimation schemes based on new learning techniques for galaxy spectra representation, using either a dictionary learning technique for sparse representation or denoising autoencoders. We investigate how these representations impact redshift estimation. These methods have been tested on realistic simulated galaxy spectra, with photometry modelled after the Large Synoptic Survey Telescope (LSST) and spectroscopy reproducing properties of the Sloan Digital Sky Survey (SDSS). They were compared to Darth Fader, a robust technique extracting line features and estimating redshift through eigentemplates cross-correlations. We show that both dictionary learning and denoising autoencoders provide improved accuracy and reliability across all signal-to-noise regimes and galaxy types. The representation learning framework for spectroscopic redshift analysis introduced in this work offers high performance in feature extraction and redshift estimation, improving on a classical eigentemplates approach. This is a necessity for next-generation galaxy surveys, and we demonstrate a successful application in realistic simulated survey data.
description: 15 pages and 11 figures. To be published in A&A
title: Fictions, enabling fictions, and autofiction within painting; or, "This painting is a work of fiction", I said.
Creators: name: Perkins, Aaron M
Publisher: name: Griffith University
Year: 2022
Subjects: subject: autofiction
subject: visual art - painting
subject: creative arts research

description: This practice-led research project investigates the potential for a philosophically defined and criterial notion of fiction to function within the medium of painting. It develops Kendall L. Walton’s make-believe theory of fiction via Gregory Currie and Richard Wollheim to include a criterion of fictive intent, whereby a painting is fictional if it is intended to prompt an act of imagining in its viewer. Although painting has not art-historically distinguished between fiction and non-fiction, the research demonstrates the intuitive usefulness of such a classification. The research then argues that painted works of fiction offer a means of insight through a visual medium into the everyday fictions that enable our understanding of the real world around us. Using contemporary anglophone autofiction—a mode or genre of writing that purposefully blurs autobiography and fiction—as a model for this inquiry, the research analyses Ben Lerner’s novel 10:04 to identify a range of strategies that confuse the real world and the fictional world of a work. These strategies are characteristic of literary autofiction and include a paratextual communication of fictive intent, an ambiguous authorial presence, the use of text and image, ekphrasis, self-appropriation, and extratextual reference. These are also identified in the painting practice of Avery Singer and so are demonstrated to be applicable across mediums. The creative outcomes of this research project emerge from a painting practice concerned with the relationship between image and text to explore the enabling fiction of a coherent self-narrative. They encompass an artist’s book, a series of paintings that manifest a tension between typographic and anthropomorphic forms, a site-specific ekphrastic catalogue essay, a site-specific collaboration with a screenwriter on an exhibition of fictional paintings, and, ultimately, an autofictional exhibition of paintings that explore a transference between painting and literature through a short story and a typeface.
Chorebus (Stiphrocera) diremtus
Creators: name: Samin, Najmeh
name: Ghahari, Hassan
name: S, Neveen
name: Monaem, R.
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Braconidae
Chorebus
Chorebus diremtus

description: Chorebus (Stiphrocera) diremtus (NEES VON ESENBECK, 1834)
M a t e r i a l e x a m i n e d: Golestanprovince,Ali-Abad, 2♀♀, 233, August 2010.
D i s t r i b u t i o n o u t s i d e I r a n: Austria, Azerbaijan, Germany, Hungary, Ireland, Lithuania, Netherlands, Poland, Russia, Sweden, Switzerland, Turkey, United Kingdom.
description: Published as part of Samin, Najmeh, Ghahari, Hassan, S, Neveen & Monaem, R., 2015, A study on the braconid wasps (Hymenoptera: Ichneumonoidea: Braconidae) from Golestan province, northern Iran, pp. 731-739 in Linzer biologische Beiträge 47 (1) on page 733, DOI: 10.5281/zenodo.5415294
B meson decay constant from two-flavor lattice QCD with non-relativistic heavy quarks
Creators: name: PACS Collaboration
name: Khan, A. Ali
name: Aoki, S.
name: Burkhalter, R.
name: Ejiri, S.
name: Fukugita, M.
name: Hashimoto, S.
name: Ishizuka, N.
name: Iwasaki, Y.
name: Kanaya, K.
name: Kaneko, T.
name: Kuramashi, Y.
name: Manke, T.
name: Nagai, K.
name: Okawa, M.
name: Shanahan, H.
name: Ukawa, A.
name: Yoshie, T.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: We present a study of leptonic $B$ meson decay constants in lattice QCD with two flavors ($N_f=2$) of light dynamical quarks using NRQCD for the heavy quark. Gauge configurations are generated with a renormalization-group improved gauge action and a meanfield-improved clover light quark action. Measurements are carried out at two values of $β=6/g^2$, each for four sea quark masses, corresponding to the inverse lattice spacing $a^{-1}\approx 1.3$ and 1.8 GeV in the chiral limit of sea quark. The continuum values of the decay constants are derived by evaluating the discretization errors at each finite lattice spacing. We find $f_B^{N_f=2}=204(8)(29)(+44) $ MeV, $f_{B_s}^{N_f=2} = 242(9)(34)(+38)$ MeV, and $f_{B_s}^{N_f=2}/f_B^{N_f=2} = 1.179(18)(23)$, where the errors listed are statistical, systematic and uncertainty due to choice of the physical quantity used to fix the scale. Comparison is made to quenched results ($N_f=0$) obtained with the same action combination and matching lattice spacings. We find $f_B^{N_f=2}/f_B^{N_f=0}=1.07(5)$, $f_{B_s}^{N_f=2}/f_{B_s}^{N_f=0}=1.10(5)$ and $(f_{B_s}/f_B)^{N_f=2}/(f_{B_s}/f_B)^{N_f=0}=1.03(2)$, which indicates a 5--10% increase in the values of the decay constants, but no appreciable change in the ratio $f_{B_s}/f_B$, due to sea quarks.
description: 37 pages, 16 Postscript figures; version to appear in Phys. Rev. D
Additional file 3: of Independent modulation of individual genomic component transcription and a cis-acting element related to high transcriptional activity in a multipartite DNA virus
Creators: name: Nai-Tong Yu
name: Xie, Hui-Min
name: Zhang, Yu-Liang
name: Wang, Jian-Hua
name: Zhongguo Xiong
name: Liu, Zhi-Xin
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Table S3. The DNA concentration of recombinant plasmids of BBTV genomic components. (DOCX 16 kb)
Quantum operations that cannot be implemented using a small mixed environment
Creators: name: Zalka, Christof
name: Rieffel, Eleanor
Publisher: name: arXiv
Year: 2001
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: To implement any quantum operation (a.k.a. ``superoperator'' or ``CP map'') on a d-dimensional quantum system, it is enough to apply a suitable overall unitary transformation to the system and a d^2-dimensional environment which is initialized in a fixed pure state. It has been suggested that a d-dimensional environment might be enough if we could initialize the environment in a mixed state of our choosing. In this note we show with elementary means that certain explicit quantum operations cannot be realized in this way. Our counterexamples map some pure states to pure states, giving strong and easily manageable conditions on the overall unitary transformation. Everything works in the more general setting of quantum operations from d-dimensional to d'-dimensional spaces, so we place our counterexamples within this more general framework.
description: LATEX, 8 pages
title: The Development of Strategic Learners: A Study of Teaching and Learning
Creators: name: Price, Nancy L
Publisher: name: Griffith University
Year: 2006
Subjects: subject: Strategic learners
subject: CORE Program for Strategic Teaching and Learning

description: This thesis study set as its objective to investigate the effect of a comprehensive intervention to develop strategic learners on participating teachers and students. The intervention, named CORE Program for Strategic Teaching and Learning, was implemented throughout the entire curriculum by every teacher in Grades 7 - 12 in the Classical School. A combination of qualitative and quantitative methodology was used for the study. Grade 7 students were chosen for research purposes. Teacher participants included both certified and non-certified individuals, all with degrees in their area of instruction, whose experience ranged from none to decades. The student population was atypical, as it was composed of very highly-achieving and above average students in a private school. A review of the literature was made in an attempt to determine the critical elements of strategic learning and the necessary components for a successful intervention. Metacognition, self-regulation, self-efficacy, attribution for success, learning goal orientation, motivation, volitional control, and learning strategies were found to be interactive processes within strategic learning. Borrowing from chaos theory, strategic learning was viewed as a complex web of interacting influences, from which one could not extract a particular element to examine. Therefore, the study attempted to implement an intervention that would affect all of the above-named skills and attitudes exemplified by strategic learners. Teachers involved accepted the intervention and utilized it within their teaching, showing progress in ease of inclusion with years of experience in the program. The study data showed that the intervention had a generally positive student learning effect on 17 out of 21 items surveyed, with statistical significance determined for five items. The intervention was equally effective with very high-achieving students as well as with the lowest achieving students in the population studied.
The Impact of Regularization on High-dimensional Logistic Regression
Creators: name: Salehi, Fariborz
name: Abbasi, Ehsan
name: Hassibi, Babak
Publisher: name: arXiv
Year: 2019
Subjects: subject: Machine Learning (stat.ML)
subject: Information Theory (cs.IT)
subject: Machine Learning (cs.LG)
subject: Probability (math.PR)
subject: FOS: Computer and information sciences
subject: FOS: Mathematics

description: Logistic regression is commonly used for modeling dichotomous outcomes. In the classical setting, where the number of observations is much larger than the number of parameters, properties of the maximum likelihood estimator in logistic regression are well understood. Recently, Sur and Candes have studied logistic regression in the high-dimensional regime, where the number of observations and parameters are comparable, and show, among other things, that the maximum likelihood estimator is biased. In the high-dimensional regime the underlying parameter vector is often structured (sparse, block-sparse, finite-alphabet, etc.) and so in this paper we study regularized logistic regression (RLR), where a convex regularizer that encourages the desired structure is added to the negative of the log-likelihood function. An advantage of RLR is that it allows parameter recovery even for instances where the (unconstrained) maximum likelihood estimate does not exist. We provide a precise analysis of the performance of RLR via the solution of a system of six nonlinear equations, through which any performance metric of interest (mean, mean-squared error, probability of support recovery, etc.) can be explicitly computed. Our results generalize those of Sur and Candes and we provide a detailed study for the cases of $\ell_2^2$-RLR and sparse ($\ell_1$-regularized) logistic regression. In both cases, we obtain explicit expressions for various performance metrics and can find the values of the regularizer parameter that optimizes the desired performance. The theory is validated by extensive numerical simulations across a range of parameter values and problem instances.
title: Active Defects in 4H–SiC MOS Devices
Creators: name: Haasmann, Daniel Erwin
Publisher: name: Griffith University
Year: 2015
Subjects: subject: Silicon carbide.
subject: Semiconductors
subject: Metal oxide semiconductor field-effect transistors.

description: The research findings presented in this thesis have provided several key contributions towards a better understanding of the SiC–SiO2 interface in SiC MOS structures. The electrically active defects directly responsible for degrading the channel-carrier mobility in 4H–SiC MOSFETs have been identified and a novel technique to detect these defects in 4H–SiC MOS capacitors has been proposed and experimentally demonstrated. With a better understanding of defects at the SiC–SiO2 interface two alternative gate oxide growth processes have been proposed to overcome the practical limitations associated with current NO-nitridation techniques in high-volume, production based oxidation furnaces. This work therefore contributes to the wider research effort towards improving the performance of SiC MOSFETs in several ways. The following paragraphs summarise the key conclusions that have been obtained as a result of this study. Electrically Active Defects and the Channel-Carrier Mobility (Chapter 3) A critical review of defects at the SiC–SiO2 interface exposed a few key discrepancies in both the current understanding of the dominant defects responsible for channel-carrier mobility degradation in 4H–SiC MOSFETs and in the current approach to characterise and evaluate the SiC–SiO2 interface. Firstly, it was recognised that the Shockley-Read-Hall statistical model, based on thermally activated transport for traps spatially located at the semiconductor-oxide interface, cannot be directly applied to describe the transfer mechanism between free conduction band electrons and the shallow NITs near EC. This implication tends to suggest that the NITs near EC in SiC MOS structures cannot be accurately examined using traditional MOS characterisation techniques that are based on this statistical model. Secondly, in accordance with the studies conducted by Saks et. al. [1-3], it was realized that channel-carrier mobility degradation in 4H–SiC MOSFETs is primarily due to the significantly reduced free electron density in the inversion channel. In light of this understanding, the interfacial defects that actively trap channel electrons under strong inversion conditions were considered to be dominant in these devices as opposed to the NITs near EC that are typically examined using conventional MOS characterisation techniques on N-type MOS capacitors in depletion. To further support this hypothesis, a theoretical analysis of the inversion carrier concentration using the charge sheet model was conducted to demonstrate that the NITs with energy levels corresponding to strong inversion are of key importance to the channel-carrier mobility.
AdS/CFT as a deep Boltzmann machine
Creators: name: Hashimoto, Koji
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: We provide a deep Boltzmann machine (DBM) for the AdS/CFT correspondence. Under the philosophy that the bulk spacetime is a neural network, we give a dictionary between those, and obtain a restricted DBM as a discretized bulk scalar field theory in curved geometries. The probability distribution as training data is the generating functional of the boundary quantum field theory, and it trains neural network weights which are the metric of the bulk geometry. The deepest layer implements black hole horizons, and an employed regularization for the weights is an Einstein action. A large $N_c$ limit in holography reduces the DBM to a folded feed-forward architecture. We also neurally implement holographic renormalization into an autoencoder. The DBM for the AdS/CFT may serve as a platform for studying mechanisms of spacetime emergence in holography.
description: 13 pages, 5 figures
Harpalus (Cryptophonus) tenebrosus Dejean 1829
Creators: name: Felix, Ron F. F. L.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Carabidae
Harpalus
Harpalus tenebrosus

description: Harpalus (Cryptophonus) tenebrosus Dejean, 1829
 Material examined. YEMEN: SOCOTRA ISLAND: 1 spec., Momi area, 29.ix.1999, W. Wranik leg. (WWCR).
 Diagnosis. Length 8.0– 11.5 mm. Black; antennae, palpi, tarsi, sometimes tibiae reddish, middle antennomeres somewhat darker. Tarsi without pubescence. All intervals glabrous. Base of pronotum punctured. Ventrites glabrous except for the two obligatory setae.
 FELIX et al. (2012) discussed and depicted the differences with the very similar Harpalus (Cryptophonus) agnatus Reiche, 1849, also known from Socotra.
 Remarks. Mentioned in WRANIK (2003) as Harpalus sp.
 Distribution. Widely distributed in western, central and southern Europe, North Africa, Middle East, Asia Minor to Middle Asia, also in the Yemen mainland. First record from Yemen (Socotra Island).
description: Published as part of Felix, Ron F. F. L., 2017, New species and new distributional data on Carabidae (Coleoptera) from the Socotra Archipelago, pp. 41-54 in Acta Entomologica Musei Nationalis Pragae (Acta. Ent. Mus. Natl. Pragae) (Acta. Ent. Mus. Natl. Pragae) 57 on pages 51-52, DOI: 10.1515/aemnp-2017-0106, http://zenodo.org/record/5325863
Unified theoretical and experimental view on transient shear banding
Creators: name: Benzi, Roberto
name: Divoux, Thibaut
name: Barentin, Catherine
name: Manneville, Sébastien
name: Sbragaglia, Mauro
name: Toschi, Federico
Publisher: name: arXiv
Year: 2019
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: Dense emulsions, colloidal gels, microgels, and foams all display a solid-like behavior at rest characterized by a yield stress, above which the material flows like a liquid. Such a fluidization transition often consists of long-lasting transient flows that involve shear-banded velocity profiles. The characteristic time for full fluidization, $τ_\text{f}$, has been reported to decay as a power-law of the shear rate $\dot γ$ and of the shear stress $σ$ with respective exponents $α$ and $β$. Strikingly, the ratio of these exponents was empirically observed to coincide with the exponent of the Herschel-Bulkley law that describes the steady-state flow behavior of these complex fluids. Here we introduce a continuum model, based on the minimization of a "free energy", that captures quantitatively all the salient features associated with such \textit{transient} shear-banding. More generally, our results provide a unified theoretical framework for describing the yielding transition and the steady-state flow properties of yield stress fluids.
description: 5 pages, 4 figures - supplemental 6 pages, 4 figures
Supplementary document for Chiral/directional mode transfer based on a tunable non-Hermitian system - 5551333.pdf
Creators: name: Zhang, Yicong
name: Liu, Weiwei
name: Long, Hua
name: Wang, Kai
name: Wang, Bing
name: Lu, Peixiang
Publisher: name: Optica Publishing Group
Year: 2021
Subjects: Uncategorized

description: Supplemental Document
Dinotrema (Dinotrema) amoenidens
Creators: name: Samin, Najmeh
name: Ghahari, Hassan
name: S, Neveen
name: Monaem, R.
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Braconidae
Dinotrema
Dinotrema amoenidens

description: Dinotrema (Dinotrema) amoenidens (FISCHER, 1973)
M a t e r i a l e x a m i n e d: Golestanprovince,Gorgan, 1♀, spring 2012.
D i s t r i b u t i o n o u t s i d e I r a n: Austria, China, Greece, Poland.
description: Published as part of Samin, Najmeh, Ghahari, Hassan, S, Neveen & Monaem, R., 2015, A study on the braconid wasps (Hymenoptera: Ichneumonoidea: Braconidae) from Golestan province, northern Iran, pp. 731-739 in Linzer biologische Beiträge 47 (1) on page 733, DOI: 10.5281/zenodo.5415294
A photon mass on the brane
Creators: name: Dick, R.
name: McArthur, D. M. E.
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We discuss the impact of a bulk photon mass in a Dvali-Gabadadze-Porrati type brane model with Maxwell terms both on the brane and in the bulk, as proposed by Dvali, Gabadadze and Shifman. The motivation to include the bulk photon mass is to suppress radiation loss into the bulk. We point out that this modifies the photon propagator in such a way that it generates a small photon mass on the brane. Compatibility with present bounds on a photon mass imply that the transition to five-dimensional distance laws for the electromagnetic potentials would appear only at super-horizon length scales, thus excluding any direct detection possibility of a transition from four-dimensional to five-dimensional distance laws in electromagnetic interactions. We also include results on fermion propagators with Dirac terms on the brane and in the bulk.
description: 9 pages
Topological Phase Transition Independent of System Non-Hermiticity
Creators: name: Zhang, K. L.
name: Wu, H. C.
name: Jin, L.
name: Song, Z.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Other Condensed Matter (cond-mat.other)
subject: Quantum Gases (cond-mat.quant-gas)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Non-Hermiticity can vary the topology of system, induce topological phase transition, and even invalidate the conventional bulk-boundary correspondence. Here, we show the introducing of non-Hermiticity without affecting the topological properties of the original chiral symmetric Hermitian systems. Conventional bulk-boundary correspondence holds, topological phase transition and the (non)existence of edge states are unchanged even though the energy bands are inseparable due to non-Hermitian phase transition. Chern number for energy bands of the generalized non-Hermitian system in two dimension is proved to be unchanged and favorably coincides with the simulated topological charge pumping. Our findings provide insights into the interplay between non-Hermiticity and topology. Topological phase transition independent of non-Hermitian phase transition is a unique feature that beneficial for future applications of non-Hermitian topological materials.
description: 17 pages, 6 figures
Solvable model of a many-filament Brownian ratchet
Creators: name: Wood, Anthony J.
name: Blythe, Richard A.
name: Evans, Martin R.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We construct and exactly solve a model of an extended Brownian ratchet. The model comprises an arbitrary number of heterogeneous, growing and shrinking filaments which together move a rigid membrane by a ratchet mechanism. The model draws parallels with the dynamics of actin filament networks at the leading edge of the cell. In the model, the filaments grow and contract stochastically. The model also includes forces which derive from a potential dependent on the separation between the filaments and the membrane. These forces serve to attract the filaments to the membrane or generate a surface tension that prevents the filaments from dispersing. We derive an N -dimensional diffusion equation for the N filament-membrane separations, which allows the steady-state probability distribution function to be calculated exactly under certain conditions. These conditions are fulfilled by the physically relevant cases of linear and quadratic interaction potentials. The exact solution of the diffusion equation furnishes expressions for the average velocity of the membrane and critical system parameters for which the system stalls and has zero net velocity. In the case of a restoring force, the membrane velocity grows as the square root of the force constant, whereas it decreases once a surface tension is introduced.
Remote operations and interactions for systems of arbitrary dimensional Hilbert space: a state-operator approach
Creators: name: Reznik, Benni
name: Aharonov, Yakir
name: Groisman, Berry
Publisher: name: arXiv
Year: 2001
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We present a systematic simple method for constructing deterministic remote operations on single and multiple systems of arbitrary discrete dimensionality. These operations include remote rotations, remote interactions and measurements. The resources needed for an operation on a two-level system are one ebit and a bidirectional communication of two cbits, and for an n-level system, a pair of entangled n-level particles and two classical ``nits''. In the latter case, there are $n-1$ possible distinct operations per one n-level entangled pair. Similar results apply for generating interaction between a pair of remote systems and for remote measurements. We further consider remote operations on $N$ spatially distributed systems, and show that the number of possible distinct operations increases here exponentially, with the available number of entangled pairs that are initial distributed between the systems. Our results follow from the properties of a hybrid state-operator object (``stator''), which describes quantum correlations between states and operations.
description: 18 pages, 3 figures, typo corrections
Schizoprymnus elongatus
Creators: name: Samin, Najmeh
name: Ghahari, Hassan
name: S, Neveen
name: Monaem, R.
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Braconidae
Schizoprymnus
Schizoprymnus elongatus

description: Schizoprymnus elongatus (SZÉPLIGETI, 1898)
M a t e r i a l e x a m i n e d: Golestan province, Salikandeh, 1♀, 233, September 2009.
D i s t r i b u t i o n o u t s i d e I r a n: Afghanistan, Armenia, Azerbaijan, Belarus, Czech Republic, Georgia, Hungary, Kazakhstan, Lithuania, Moldova.
description: Published as part of Samin, Najmeh, Ghahari, Hassan, S, Neveen & Monaem, R., 2015, A study on the braconid wasps (Hymenoptera: Ichneumonoidea: Braconidae) from Golestan province, northern Iran, pp. 731-739 in Linzer biologische Beiträge 47 (1) on page 734, DOI: 10.5281/zenodo.5415294
Chlaenius (Chlaeniellus) laeviplaga subsp. laeviplaga Chaudoir 1876
Creators: name: Felix, Ron F. F. L.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Carabidae
Chlaenius
Chlaenius laeviplaga
Chlaenius (chlaeniellus) laeviplaga laeviplaga chaudoir, 1876

description: Chlaenius (Chlaeniellus) laeviplaga laeviplaga Chaudoir, 1876
 Material examined. YEMEN: SOCOTRA ISLAND: 1 spec., Dixam, Wadi Zereg, 12.46868N 54.01091E, 279 m, 24.iv.2014, Sharaf leg. (KSMA).
description: Published as part of Felix, Ron F. F. L., 2017, New species and new distributional data on Carabidae (Coleoptera) from the Socotra Archipelago, pp. 41-54 in Acta Entomologica Musei Nationalis Pragae (Acta. Ent. Mus. Natl. Pragae) (Acta. Ent. Mus. Natl. Pragae) 57 on page 51, DOI: 10.1515/aemnp-2017-0106, http://zenodo.org/record/5325863
Fragment-based design, synthesis and biological evaluation of theophylline derivatives as ATAD2 inhibitors in BT-549 cells
Creators: name: Yao, Dahong
name: You, Jieshu
name: Yang, Xuetao
name: Zhang, Jin
name: Yao, Xiaojun
Publisher: name: Taylor & Francis
Year: 2023
Subjects: Biochemistry
Medicine
Cell Biology
Pharmacology
Biotechnology
Chemical Sciences not elsewhere classified
Cancer
Hematology

description: ATPase family AAA domain-containing protein 2 (ATAD2) has been emerging as a hot anti-cancer drugable target due to its oncogenic epigenetic modification closely associated with cancer cells proliferation, apoptosis, migration and drug resistance. In this study, we design a series of theophylline derivatives as novel ATAD2 inhibitors through fragment-based screening and scaffold growth strategy. A novel potent ATAD2 inhibitor (compound 19f) is discovered with an IC50 value of 0.27 μM against ATAD2, which adopts a combination of classic and atypical binding mode. Additionally, compound 19f could impede ATAD2 activity and c-Myc activation, induced significant apoptosis, and illustrated an anti-migration effect in BT-549 cells. Collectively, these results provide new enlightenment for the development of novel potent ATAD2 inhibitors for triple-negative breast cancer (TNBC) treatment.
Schizoprymnus excisus
Creators: name: Samin, Najmeh
name: Ghahari, Hassan
name: S, Neveen
name: Monaem, R.
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Braconidae
Schizoprymnus
Schizoprymnus excisus

description: Schizoprymnus excisus (ŠNOFLÁK 1953)
M a t e r i a l e x a m i n e d: Golestanprovince,Gorgan,13, spring 2012.
D i s t r i b u t i o n o u t s i d e I r a n: Kazakhstan, Mongolia.
description: Published as part of Samin, Najmeh, Ghahari, Hassan, S, Neveen & Monaem, R., 2015, A study on the braconid wasps (Hymenoptera: Ichneumonoidea: Braconidae) from Golestan province, northern Iran, pp. 731-739 in Linzer biologische Beiträge 47 (1) on page 734, DOI: 10.5281/zenodo.5415294
Lipostratia distinguenda
Creators: name: Felix, Ron F. F. L.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Carabidae
Lipostratia
Lipostratia distinguenda

description: Lipostratia distinguenda (Fairmaire, 1886)
 Material examined. YEMEN: SAMHA ISLAND: 1 spec., 8.ii.2000, Wranik leg. (WWCR).
 Remarks. This specimen was mentioned in WRANIK (2003) as Callida sp. First record from Samha Island.
description: Published as part of Felix, Ron F. F. L., 2017, New species and new distributional data on Carabidae (Coleoptera) from the Socotra Archipelago, pp. 41-54 in Acta Entomologica Musei Nationalis Pragae (Acta. Ent. Mus. Natl. Pragae) (Acta. Ent. Mus. Natl. Pragae) 57 on page 52, DOI: 10.1515/aemnp-2017-0106, http://zenodo.org/record/5325863
Virtual screening, structure based pharmacophore mapping, and molecular simulation studies of pyrido[2,3-d]pyrimidines as selective thymidylate synthase inhibitors
Creators: name: Kumar, Adarsh
name: Novak, Jurica
name: Singh, Ankit Kumar
name: Singh, Harshwardhan
name: Thareja, Suresh
name: Pathak, Prateek
name: Grishina, Maria
name: Verma, Amita
name: Kumar, Pradeep
Publisher: name: Taylor & Francis
Year: 2023
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Hematology
subject: Virology

description: Human thymidylate synthase is the rate-limiting enzyme in the de novo synthesis of 2'-deoxythymidine-5'-monophosphate. dUMP (pyrimidine) and folate binding site hTS inhibitors showed resistance in colorectal cancer (CRC). In the present study, we have performed virtual screening of the pyrido[2,3-d]pyrimidine database, followed by binding free energy calculations, and pharmacophore mapping to design novel pyrido[2,3-d]pyrimidine derivatives to stabilize inactive confirmation of hTS. A library of 42 molecules was designed. Based on the molecular docking studies, four ligands (T36, T39, T40, and T13) were identified to have better interactions and docking scores with the catalytic sites [dUMP (pyrimidine) and folate binding sites] of hTS protein than standard drug, raltitrexed. To validate efficacy of the designed molecules, we performed molecular dynamics simulation studies at 1000 ns with principal component analysis and binding free energy calculations on the hTS protein, also drug likeness properties of all hits were in acceptable range. Compounds T36, T39, T40, and T13 interacted with the catalytic amino acid (Cys195), an essential amino acid for anticancer activity. The designed molecules stabilized the inactive conformation of hTS, resulting in the inhibition of hTS. The designed compounds will undergo synthesis and biological evaluation, which may yield selective, less toxic, and highly potent hTS inhibitors. Communicated by Ramaswamy H. Sarma
Additional file 2: of Independent modulation of individual genomic component transcription and a cis-acting element related to high transcriptional activity in a multipartite DNA virus
Creators: name: Nai-Tong Yu
name: Xie, Hui-Min
name: Zhang, Yu-Liang
name: Wang, Jian-Hua
name: Zhongguo Xiong
name: Liu, Zhi-Xin
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Hematology
subject: Plant Biology
subject: 60506 Virology

description: Table S2. Primers designed for BBTV genomic components. (DOCX 15 kb)
Properties of the donor impurity band in mixed valence insulators
Creators: name: Skinner, Brian
Publisher: name: arXiv
Year: 2019
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: In traditional semiconductors with large effective Bohr radius, an electron donor creates a hydrogen-like bound state just below the conduction band edge. The properties of the impurity band arising from such hydrogenic impurities have been studied extensively during the last 70 years. In this paper we consider whether a similar bound state and a similar impurity band can exist in mixed-valence insulators, where the gap arises at low temperature due to strong electron-electron interactions. We find that the structure of the hybridized conduction band leads to an unusual bound state that can be described using the physics of the one-dimensional hydrogen atom. The properties of the resulting impurity band are also modified in a number of ways relative to the traditional semiconductor case; most notably, the impurity band can hold a much larger concentration without inducing an insulator-to-metal transition. We estimate the critical doping associated with this transition, and then proceed to calculate the dc and ac conductivities and the specific heat. We discuss our results in light of recent measurements on the mixed-valence insualtor SmB$_6$, and find them to be consistent with the experiments.
description: 9+5 pages, 3 figures; published version
Liouville Field Theory on an Unoriented Surface
Creators: name: Hikida, Yasuaki
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Liouville field theory on an unoriented surface is investigated, in particular, the one point function on a RP^2 is calculated. The constraint of the one point function is obtained by using the crossing symmetry of the two point function. There are many solutions of the constraint and we can choose one of them by considering the modular bootstrap.
description: 13 pages, no figures, LaTeX, minor changes, equations in section 4 are corrected
Volumes of random 3-manifolds
Creators: name: Viaggi, Gabriele
Publisher: name: arXiv
Year: 2019
Subjects: subject: Geometric Topology (math.GT)
subject: FOS: Mathematics
subject: 57M27, 30F60, 20P05

description: We prove a law of large numbers for the volumes of families of random hyperbolic mapping tori and Heegaard splittings providing a sharp answer to a conjecture of Dunfield and Thurston.
description: 30 pages, 5 figures. Correction on the assumptions on the probability measure in the introduction. Added discussion in section 4.4