cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1: Table S1. of Comparisons of allometric and climate-derived estimates of tree coarse root carbon stocks in forests of the United States
Creators: name: Russell, Matthew
name: Domke, Grant
name: Woodall, Christopher
name: DâAmato, Anthony
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology

description: Summary of live-tree belowground C estimates (Mg haâ  1) from the current US national greenhouse gas inventory (BGCNGHGI; Smith et al. 2013), climate-derived predictions (BGCClim; Reich et al. 2014), and adjustment factors (AdjFactor) used to amend BGCNGHGI estimates by taking into account climate-derived predictions.
Cerradomys marinhus
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Cricetidae
Cerradomys
Cerradomys marinhus

description: Cerradomys marinhus
Karyotype: 2n = 56 and FN = 54. Autosomal complement: 27 acrocentric pairs decreasing in size. Sex chromosomes: X, a large acrocentric; Y, a small acrocentric (Bonvicino 2003, pp. 84, Fig. 2; Bonvicino et al. 2014).
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 9, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Additional file 6 of Evolutionary history of phosphatidylinositol- 3-kinases: ancestral origin in eukaryotes and complex duplication patterns
Creators: name: Philippon, Héloïse
name: Brochier-Armanet, Céline
name: Perrière, Guy
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Number of gaps per sequence after site selection for the the regulatory subunit class IB dataset. Sequences are sorted by increased percentage of gaps.
Additional file 7 of Evolutionary history of phosphatidylinositol- 3-kinases: ancestral origin in eukaryotes and complex duplication patterns
Creators: name: Philippon, Héloïse
name: Brochier-Armanet, Céline
name: Perrière, Guy
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Number of gaps per sequence after site selection for the MIC class II catalytic subunit dataset. Sequences are sorted by increased percentage of gaps.
Cerradomys scotti
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Cricetidae
Cerradomys
Cerradomys scotti

description: Cerradomys scotti
Karyotype: 2n = 58 and FN = 70. Autosomal complement: seven small metacentric and submetacentric pairs, and 21 acrocentric pairs large to small decreasing in size. Sex chromosomes: X chromosome presented three different morphologies, a large submetacentric (Xa), a large subtelocentric (Xb), and a large subtelocentric shorter than Xb (Xc); Y chromosome presented three different morphologies, a medium submetacentric (Ya), a medium subtelocentric (Yb), and a medium acrocentric (Yc). C-banding metaphases exhibited blocks of constitutive heterochromatin on the pericentromeric region of all autosomes. The X chromosomes presented their short arms and centromeric regions heterochromatic, besides two interstitial bands on its long arms. The three types of Y chromosomes presented their long arms almost entirely heterochromatic. G- and R-banding were also performed. Multiple NORs, varying from three to eleven, were localized on the short arms of acrocentric autosomes (Svartman & Almeida 1992a, pp. 317, Fig. 1). FISH with telomeric sequences revealed signals exclusively at the ends of all chromosome arms and no interstitial signals were observed (Andrades-Miranda et al. 2002).
The same diploid number was reported by Bonvicino et al. (1999), Langguth & Bonvicino (2002) and Bonvicino et al. (2005). These authors reported a different fundamental number of 72 due to a presence of one medium subtelocentric pair instead of a medium acrocentric one, and two males carrying one additional B chromosome. These variation in fundamental number occurs sympatrically on specimens collected in Goiás, state of Brazil (Table 2, Fig. 2).
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 9, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Additional file 12 of Evolutionary history of phosphatidylinositol- 3-kinases: ancestral origin in eukaryotes and complex duplication patterns
Creators: name: Philippon, Héloïse
name: Brochier-Armanet, Céline
name: Perrière, Guy
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Phylogenetic tree of Metazoa, Ichtyosporea and Choanoflagellida homologs of PI3K class I catalytic proteins. The tree was inferred with the LG+ Γ 4 model (828 sites, 185 sequences). Sequences are colored according to their taxonomic classification. Branch statistical supports and duplication events are shown using the same symbols as in Fig. 1.
Additional file 1: of Everybody needs a cheerleader to get a kidney transplant: a qualitative study of the patient barriers and facilitators to kidney transplantation in the Southeastern United States
Creators: name: Browne, Teri
name: Ahinee Amamoo
name: Patzer, Rachel
name: Krisher, Jenna
name: Well, Henry
name: Gander, Jennifer
name: Pastan, Stephen
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy

description: Focus Group Interview Guide. This is the interview guide used for all of the focus groups in this study. (DOCX 14Â kb)
MOESM2 of Genomic prediction of crossbred performance based on purebred Landrace and Yorkshire data using a dominance model
Creators: name: Esfandyari, Hadi
name: Bijma, Piter
name: Henryon, Mark
name: Christensen, Ole
name: SĂ¸Rensen, Anders
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Plant Biology

description: Additional file 2. Distribution of estimated additive and dominance effects of SNPs. Distribution of estimated additive and dominance effects of SNPs for Landrace and Yorkshire lines.
MOESM1 of Genomic prediction of crossbred performance based on purebred Landrace and Yorkshire data using a dominance model
Creators: name: Esfandyari, Hadi
name: Bijma, Piter
name: Henryon, Mark
name: Christensen, Ole
name: SĂ¸Rensen, Anders
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Marine Biology

description: Additional file 1. Within-line prediction accuracy. Results for within-line prediction accuracy for Landrace and Yorkshire sows under two genomic models.
Cerradomys subflavus
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Cricetidae
Cerradomys
Cerradomys subflavus

description: Cerradomys subflavus
Karyotype: 2n = 54 and FN = 62. Autosomal complement: three large submetacentric pairs, two small metacentric pairs, and 21 acrocentric pairs medium to small decreasing in size. Sex chromosomes: X chromosome presented two different morphologies, a large acrocentric (Xa), and a large subtelocentric (Xb); Y chromosome presented two different morphologies, a medium acrocentric (Ya), and a large acrocentric (Yb) (Almeida & Yonenaga-Yassuda 1985, pp. 132, Fig. 2; Langguth & Bonvicino 2002). Two different morphologies of sex chromosomes were recognized by Percequillo et al. (2008), a medium acrocentric X and a small acrocentric Y. Variation in diploid (2n = 55 and 2n = 56) and fundamental number (FN = 63) were reported resulting from centric fusions affecting one large submetacentric pair (Yonenaga et al. 1976; Almeida & Yonenaga-Yassuda 1985). C-banding metaphases exhibited blocks of constitutive heterochromatin on the pericentromeric region of all autosomes, with the exception of the three submetacentric pairs, in this case only a discrete staining was observed. The Xb exhibited constitutive heterochromatin on the short arm, on the centromeric and proximal region of long arm, and an interstitial C-band was observed on its long arm. The Ya presented a large heterochromatic block on the distal portion of its long arm, amounting to about two-thirds of its length, while no heterochromatin material was detected on the pericentromeric region. G- and Q-banding were also performed (Almeida & Yonenaga-Yassuda 1985).
Another karyotype with 2n = 54 and FN = 64 was reported by Paresque et al. (2004) and Moreira et al. (2009). The difference in the fundamental number was due to the presence of one small metacentric pair instead of an acrocentric one. Moreira et al. (2009), presented another morphology for the Y chromosome, being a medium metacentric. These variations in diploid and fundamental number of C. subflavus occurs sympatrically on specimens collected in Bahia, Espírito Santo, Minas Gerais and São Paulo, states of Brazil (Table 2, Fig. 2).
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 9, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
MOESM3 of Genomic prediction of crossbred performance based on purebred Landrace and Yorkshire data using a dominance model
Creators: name: Esfandyari, Hadi
name: Bijma, Piter
name: Henryon, Mark
name: Christensen, Ole
name: SĂ¸Rensen, Anders
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Marine Biology
subject: Plant Biology

description: Additional file 3. Predictive ability of MA and MAD based on GBLUP. Prediction accuracy for Landrace and Yorkshire boars under two genomic models.
Additional file 1: Appendix 1. of Explanations and information-giving: clinician strategies used in talking to parents of preterm infants
Creators: name: M. Redshaw
name: M. Harvey
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Molecular Biology
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy

description: Topic guide used to facilitate the provision of essential information. Appendix 2: Framework developed for analysis of audio-recordings based on first 24 recordings and list of sources. (DOCX 25 kb)
Additional file 1: of The effect of tailored Web-based interventions on pain in adults: a systematic review protocol
Creators: name: Martorella, Géraldine
name: C. Gélinas
name: M. Bérubé
name: M. Boitor
name: S. Fredericks
name: S. LeMay
Publisher: name: Figshare
Year: 2016
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: PRISMA-P 2015 checklist. The PRISMA framework will be used to ensure the transparent reporting of this systematic review including the flow diagram. (DOCX 35.5 kb)
Cerradomys vivoi
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Cricetidae
Cerradomys
Cerradomys vivoi

description: Cerradomys vivoi
Karyotype: 2n = 50 and FN = 64. Autosomal complement: eight metacentric and submetacentric pairs (one large, four medium, and three small), and 16 acrocentric pairs (one large and remaining medium to small decreasing in size). Sex chromosomes: X, a medium acrocentric; Y, a slightly smaller medium acrocentric. C-banding metaphases exhibited blocks of constitutive heterochromatin on the pericentromeric region of small autosomes, being absent on the large autosomes and on the X chromosome, the Y chromosome had a heterochromatic block distally on the long arm. G-banding was also performed. FISH with telomeric sequences revealed signals at the ends of all chromosome arms, and additional telomeric sequences were found on the centromeric regions of one large and one medium biarmed pairs (Andrades-Miranda et al. 2002, pp. 13, Fig. 2B).
The same karyotype was reported by Pereira & Geise (2007). The authors reported a different fundamental number of 66 due to the presence of one small metacentric pair instead of an acrocentric one. Furthermore, they reported a specimen with 2n = 51, with one large acrocentric chromosome without homologous and one more pair of small acrocentric chromosomes. The basic diploid number of 2n = 50 was also reported by Percequillo et al. (2008), who also reported a different fundamental number of 62 due to a presence of one small acrocentric pair instead of a metacentric one, these authors also found a fundamental number of 63 in one male and one female, due to a pericentric inversion involving one chromosome of a medium autosome pair. Another difference was related with the size of Y chromosome smaller on these samples. These variation in diploid and fundamental number of C. vivoi occurs sympatrically on specimens collected in Bahia and Minas Gerais, states of Brazil (Table 2, Fig. 2).
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 13, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Gahrliepia (Gahrliepia) exilis Traub and Morrow 1955
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Trombiculidae
Gahrliepia
Gahrliepia exilis

description: Gahrliepia (Gahrliepia) exilis Traub and Morrow, 1955:
PAL
Gahrliepia (Scrobiculata) exilis, Vercammen-Grandjean 1968c [insigne group]
Gateria (Gateria) exilis, Wen & Gui 2000
Gahrliepia exilis, Stekolnikov 2021
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 22, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Additional file 1: Figure S1. of Exercise-induced mitochondrial p53 repairs mtDNA mutations in mutator mice
Creators: name: Adeel Safdar
name: Khrapko, Konstantin
name: Flynn, James
name: Saleem, Ayesha
name: Lisio, Michael
name: Johnston, Adam
name: Yevgenya Kratysberg
name: Samjoo, Imtiaz
name: Kitaoka, Yu
name: Ogborn, Daniel
name: Little, Jonathan
name: Raha, Sandeep
name: Parise, Gianni
name: Akhtar, Mahmood
name: Hettinga, Bart
name: Rowe, Glenn
name: Zoltan Arany
name: Prolla, Tomas
name: Tarnopolsky, Mark
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Cancer

description: Endurance exercise confers complete phenotype protection, suppresses early mortality, mitigates mitochondrial ROS-mediated oxidative damage, increases cellular antioxidant capacity, and 4 prevents cellular senescencmutator mice. Figure S2. Endurance exercise prevents dysregulated mitochondrial-induced apoptosis and reduces nuclear p53-mediated repression of PGC-1Îą and promotes mitochondrial biogenesis in mutator mice. Figure S3. Endurance exercise promotes systemic mitochondrial biogenesis in mtDNA mutator mice. Figure S4. Magnitude of mitochondrial ROS (physiological vs. pathological) regulates p53 subcellular localization. Figure S5. Pre-treatment with exogenous antioxidant preferentially shuttles p53 to mitochondria in response to stress. Figure S6. Endurance exercise-mediated attenuation of sarcopenia, increase in endurance capacity, skeletal muscle mitochondrial biogenesis, and repair of muscle mtDNA mutations is p53 dependent. Table S1. WT, PolG-SED, and PolG-END Skeletal Muscle Microarray IPA-GO Analysis. Table S2. Real-time PCR primer sequences. (PDF 1601Â kb)
Reproducible Randomness in Parallel Machine Learning Input Pipelines
Creators: name: Cook, Zak Maki
Publisher: name: ETH Zurich
Year: 2022

description: Input pipelines in Machine Learning is the process of extracting, transforming and loading data to the model for training. Input pipelines often involve a series of stateful random transformations to increase robustness and accuracy of the trained model, which when combined with parallel or asynchronous
operations, leads to non-deterministic results. This conflicts with a need for reproducible behavior in training pipelines, which would benefit model development and debugging, and has applications in mission-critical applications such as healthcare and finance. Current approaches to solving
non-determinism in the input pipeline incur a multiplicative overhead in training time ranging between 3-35x due to forcing sequential execution. We propose a mechanism of per-element seeds, which allows for maintaining a parallel input pipeline while achieving reproducibility, and has minimal
overhead over non-deterministic baselines. We validate our implementation by demonstrating end-to-end determinism in common ML training pipelines. We further evaluate the potential benefit of per-element seeds by integrating into an experimental solution for distributed reproducible randomness, built on top of tf.data service.
Robinia pseudoacacia Linnaeus 1753
Creators: name: Song, Zhu-Qiu
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Robinia
Robinia pseudoacacia

description: 2. Robinia pseudoacacia Linnaeus (1753: 722)
Type: — United States, “ Habitat in Virginia ”, Herb. Clifford: 354, Robinia 1, sheet B (lectotype: BM000646538 image!, designated by Barrie in Jarvis et al. 1993: 82).
= Derris robusta var. assamica (Thothathri 1962: 180), syn. nov. Type: — INDIA. Upper Shillong, 1933 m, June 1920, H. G. Carter 1696 (holotype: CAL0000011089 image!; isotype: CAL0000011090 image!).
description: Published as part of Song, Zhu-Qiu, 2023, Taxonomic notes on the genus Brachypterum (Fabaceae: Millettieae), pp. 251-263 in Phytotaxa 584 (4) on page 261, DOI: 10.11646/phytotaxa.584.4.2, http://zenodo.org/record/7663405
Rossby Wave Breaking in Present and End-of-Century Climate
Creators: name: Lee, Ming Hon Franco
Publisher: name: ETH Zurich
Year: 2022
Subjects: Rossby wave breaking
Climate change

description: Rossby waves are important drivers of the evolution of mid-latitude weather and their breaking (Rossby wave breaking, RWB) is known to initiate high-impact weather events such as heavy precipitation. Under global warming, the wave dynamics is expected to change and may possibly affect future extreme weather. In this study, the changes in RWB in a warming climate and their relationships to the jet (waveguide) and heavy precipitation are explored. Potential vorticity (PV) streamers and cutoffs are utilized as proxies for RWB events. Using a feature-based identification algorithm, their climatological frequencies are obtained in present-day and end-of-century climate model simulations of the Community Earth System Model (CESM). A comparison to ERA-Interim reanalysis demonstrates the ability of the CESM model to reproduce plausible seasonal cycles and geographical distributions of RWB despite an obvious isentropic level shift. The comparison between present-day and end-of-century climate simulations shows significant seasonal and regional changes of the climatological RWB frequencies. Prominent decreases in RWB frequency are observed near the North American west coast and the subtropical North Atlantic during boreal winter, while increases are seen in similar regions during boreal summer. These changes are mainly related to anticyclonic wave breaking (AWB) with the exception of the changes over the North American west coast in summer. Separated and merged jet configurations are revealed using composite zonal velocity fields during and outside of RWB occurrence. The changes in relative frequencies of the jet states are postulated to accompany the changes in RWB frequency. Though RWB is likely to remain as a trigger for heavy precipitation in future climate, the contribution from RWB changes in heavy precipitation redistribution cannot be quantified easily and other methods are required to explore this relationship.
Additional file 2: of No effects of oral vitamin D supplementation on non-alcoholic fatty liver disease in patients with type 2 diabetes: a randomized, double-blind, placebo-controlled trial
Creators: name: Barchetta, Ilaria
name: Ben, Maria Del
name: Angelico, Francesco
name: Martino, Michele Di
name: Fraioli, Antonio
name: Torre, Giuseppe La
name: Saulle, Rosella
name: Perri, Ludovica
name: Morini, Sergio
name: Tiberti, Claudio
name: Bertoccini, Laura
name: Cimini, Flavia
name: Panimolle, Francesca
name: Catalano, Carlo
name: Baroni, Marco
name: Cavallo, Maria
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Science Policy

description: CONSORT 2010 checklist. (DOC 216 kb)
Additional file 1: of No effects of oral vitamin D supplementation on non-alcoholic fatty liver disease in patients with type 2 diabetes: a randomized, double-blind, placebo-controlled trial
Creators: name: Barchetta, Ilaria
name: Ben, Maria Del
name: Angelico, Francesco
name: Martino, Michele Di
name: Fraioli, Antonio
name: Torre, Giuseppe La
name: Saulle, Rosella
name: Perri, Ludovica
name: Morini, Sergio
name: Tiberti, Claudio
name: Bertoccini, Laura
name: Cimini, Flavia
name: Panimolle, Francesca
name: Catalano, Carlo
name: Baroni, Marco
name: Cavallo, Maria
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology

description: Study protocol. (PDF 134 kb)
SIMILAR AND DIFFERENT ASPECTS OF FAIRY TALES IN ENGLISH AND UZBEK LANGUAGES
Creators: name: Ibrahimova Latofat Akmal qizi Denov Institute of Entrepreneurship and Pedagogy Master's student of foreign language and literature, English language
Publisher: name: Zenodo
Year: 2024

description: Ertaklar — bu har bir millatning madaniyati, tarixi va qadriyatlarini aksettiruvchi muhim adabiy janrdir. Ingliz va o‘zbek tillaridagi ertaklar ham o‘ziga xosxususiyatlarga ega bo‘lib, ularning o‘xshash va turli tomonlari mavjud. Ushbumaqolada ingliz va o‘zbek ertaklarining o‘xshashliklari va farqlari, ularning mazmuni,strukturasidagi o‘ziga xosliklar, qahramonlar, mavzular va axloqiy saboqlar haqidama'lumotlar berilgan. 7
Cerradomys Weksler, Percequillo & Voss 2006
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Cricetidae
Cerradomys

description: Cerradomys sp.
Karyotype: 2n = 46 and NF = 56, unpublished data (J.F.S. Lima), mentioned by Bonvicino et al. (2014, pp. 531, Table I). This karyotype seems to be the same reported by Maia & Hulak (1981) for samples from Pernambuco, Brazil (Table 2). However, it was not possible to compare the two karyotypes, since metaphase plate of the former was not available.
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 13, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Effects of narratives on undergraduate student understanding of fundamental concepts in biology
Creators: name: Tobler, Samuel
name: Sinha, Tanmay
name: Köhler, Katja
name: Hafen, Ernst
name: Kapur, Manu
Publisher: name: ETH Zurich
Year: 2022
Subjects: Narrative
Biology
Biology Education
Higher Education
Understanding
Conceptual Change

description: Undergraduate students frequently struggle to understand biological concepts. Embedding conceptual information in a historical narrative holds the potential to support their learning. We developed learning materials comparing narrative or expository texts and assessed students’ conceptual understanding via post-tests. Results showed that students, who read the narrative text, understood the concept of randomness better. No difference was found for the enzyme energetics concept. Furthermore, students in the narrative group reported higher situational interest after the intervention.
Additional file 3: of Evaluating Data Abstraction Assistant, a novel software application for data abstraction during systematic reviews: protocol for a randomized controlled trial
Creators: name: Saldanha, Ian
name: Schmid, Christopher
name: Lau, Joseph
name: Dickersin, Kay
name: Berlin, Jesse
name: Jap, Jens
name: Smith, Bryant
name: Carini, Simona
name: Chan, Wiley
name: Bruijn, Berry
name: Wallace, Byron
name: Hutfless, Susan
name: Sim, Ida
name: M. Murad
name: Walsh, Sandra
name: Whamond, Elizabeth
name: Tianjing Li
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Plant Biology

description: Announcement of funding of DAA Trial by PCORI. (DOCX 486 kb)
Additional file 4: of Evaluating Data Abstraction Assistant, a novel software application for data abstraction during systematic reviews: protocol for a randomized controlled trial
Creators: name: Saldanha, Ian
name: Schmid, Christopher
name: Lau, Joseph
name: Dickersin, Kay
name: Berlin, Jesse
name: Jap, Jens
name: Smith, Bryant
name: Carini, Simona
name: Chan, Wiley
name: Bruijn, Berry
name: Wallace, Byron
name: Hutfless, Susan
name: Sim, Ida
name: M. Murad
name: Walsh, Sandra
name: Whamond, Elizabeth
name: Tianjing Li
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer
subject: Science Policy

description: Institutional review board (IRB) approval for DAA Trial from Johns Hopkins University Bloomberg School of Public Health. (DOCX 265 kb)
Additional file 5: of Evaluating Data Abstraction Assistant, a novel software application for data abstraction during systematic reviews: protocol for a randomized controlled trial
Creators: name: Saldanha, Ian
name: Schmid, Christopher
name: Lau, Joseph
name: Dickersin, Kay
name: Berlin, Jesse
name: Jap, Jens
name: Smith, Bryant
name: Carini, Simona
name: Chan, Wiley
name: Bruijn, Berry
name: Wallace, Byron
name: Hutfless, Susan
name: Sim, Ida
name: M. Murad
name: Walsh, Sandra
name: Whamond, Elizabeth
name: Tianjing Li
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Plant Biology
subject: FOS: Biological sciences

description: Institutional review board (IRB) approval for DAA Trial from Brown University. (DOCX 236 kb)
Additional file 1: of Evaluating Data Abstraction Assistant, a novel software application for data abstraction during systematic reviews: protocol for a randomized controlled trial
Creators: name: Saldanha, Ian
name: Schmid, Christopher
name: Lau, Joseph
name: Dickersin, Kay
name: Berlin, Jesse
name: Jap, Jens
name: Smith, Bryant
name: Carini, Simona
name: Chan, Wiley
name: Bruijn, Berry
name: Wallace, Byron
name: Hutfless, Susan
name: Sim, Ida
name: M. Murad
name: Walsh, Sandra
name: Whamond, Elizabeth
name: Tianjing Li
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Plant Biology

description: Location of SPIRIT 2013 checklist items in this manuscript. (DOCX 47 kb)
Additional file 2: of Evaluating Data Abstraction Assistant, a novel software application for data abstraction during systematic reviews: protocol for a randomized controlled trial
Creators: name: Saldanha, Ian
name: Schmid, Christopher
name: Lau, Joseph
name: Dickersin, Kay
name: Berlin, Jesse
name: Jap, Jens
name: Smith, Bryant
name: Carini, Simona
name: Chan, Wiley
name: Bruijn, Berry
name: Wallace, Byron
name: Hutfless, Susan
name: Sim, Ida
name: M. Murad
name: Walsh, Sandra
name: Whamond, Elizabeth
name: Tianjing Li
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Plant Biology

description: Pilot study to classify data abstractor experience with data abstraction. (DOCX 39 kb)
Additional file 1: of Guided, internet-based, rumination-focused cognitive behavioural therapy (i-RFCBT) versus a no-intervention control to prevent depression in high-ruminating young adults, along with an adjunct assessment of the feasibility of unguided i-RFCBT, in the REducing Stress and Preventing Depression trial (RESPOND): study protocol for a phase III randomised controlled trial
Creators: name: Cook, Lorna
name: Watkins, Edward
Publisher: name: Figshare
Year: 2016
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Participant information sheet. (PDF 178 kb)
Drymoreomys Percequillo, Weksler & Costa 2011
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Cricetidae
Drymoreomys

description: Drymoreomys Percequillo, Weksler & Costa 2011
Monotypic genus represented by D. albimaculatus (Percequillo, Weksler & Costa 2011), all known specimens were from the eastern slopes of the Serra do Mar, in the coastal Brazilian Atlantic Rainforest from Rio de Janeiro to Santa Catarina states (Percequillo et al. 2011; Delciellos et al. 2015).
Karyotype: 2n = 62 and FN = 62. Autosomal complement: one small metacentric pair, and 29 acrocentric pairs large to small decreasing in size. Sex chromosomes: X, a large submetacentric; Y, a large submetacentric slightly smaller than the X (Suárez-Villota et al. 2013, pp. 68, Fig. 1; Delciellos et al. 2015). C-banding metaphases exhibited pericentromeric constitutive heterochromatic blocks on all autosomes and on the long arm of Y. G-banding was also performed. FISH with telomeric sequences revealed signals at the ends of all chromosomes, and additional telomeric sequences were found on the pericentromeric region of both X and Y chromosomes (Suárez-Villota et al. 2013).
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 13, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Additional file 2 of On the relevance of technical variation due to building pools in microarray experiments
Creators: name: Rudolf, Henrik
name: Nuernberg, Gerd
name: Koczan, Dirk
name: Vanselow, Jens
name: Gempe, Tanja
name: Beye, Martin
name: Leboulle, Gérard
name: Bienefeld, Kaspar
name: Reinsch, Norbert
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Plant Biology
subject: Computational Biology

description: Comparison of simulated and estimated blending error variance. Plot of the average estimated variance components σ ̂ 2 2 ${\hat \sigma _{2}^{2}}$ versus simulated values σ z 2 ( e σ b 2 − 1 ) ${\sigma _{z}^{2}}(e^{{\sigma _{b}^{2}}}-1)$ . In various simulation runs, the pooling technical variance σ z 2 ${\sigma _{z}^{2}}$ was altered in the range of (0,2.7] to evaluate whether the approximation in Eq. (3) is applicable for our purposes. Numbers of individuals in a pool were randomly chosen. For each number, as many individuals were artificially blended into a pool and an equally sized pool of controls was opposed. Estimates and simulated values agree very well; some bias for small values can be attributed to the EM-REML algorithm used for variance component estimation. (PDF 9 kb)
Additional file 2: of Guided, internet-based, rumination-focused cognitive behavioural therapy (i-RFCBT) versus a no-intervention control to prevent depression in high-ruminating young adults, along with an adjunct assessment of the feasibility of unguided i-RFCBT, in the REducing Stress and Preventing Depression trial (RESPOND): study protocol for a phase III randomised controlled trial
Creators: name: Cook, Lorna
name: Watkins, Edward
Publisher: name: Figshare
Year: 2016
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Consent form. (DOCX 17 kb)
Gahrliepia (Gahrliepia) fenestrulata Traub and Morrow 1957
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Trombiculidae
Gahrliepia
Gahrliepia fenestrulata

description: Gahrliepia (Gahrliepia) fenestrulata Traub and Morrow, 1957:
ORI
Gahrliepia (Scrobiculata) fenestrulata, Vercammen-Grandjean 1968c [insigne group]
Intermedialia (Jianxia) fenestrulata, Wen & Xiang 1984d; Wenn 1999b
Gahrliepia fenestrulata, Chaisiri et al. 2016; Stekolnikov 2021
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 22, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Atomistic insight into three-dimensional twin embryo growth in Mg alloys
Creators: name: Hu, Yang
name: Kochmann, Dennis M.
Publisher: name: ETH Zurich
Year: 2022
Subjects: Magnesium
Twinning
Alloys
Molecular Dynamics

description: Magnesium (Mg) alloys are essential for industrial applications but poorly understood from a mechanistic perspective, while a comprehensive understanding of their mechanical behavior can guarantee a more efficient alloy design as well as a greater application potential. As one of the key deformation mechanisms in Mg and Mg alloys, twinning is investigated in this work. Molecular dynamics simulations are used to perform a systematic study of the effect of alloying elements and solute compositions on twin embryo growth in nine Mg alloys. The alloying elements include Al, Zn, Li, Ca, Pb, Nd, Ce, Sn, and Y, covering a wide range of element properties such as lattice constant, bulk/shear modulus, and cohesive energy. We demonstrate a faster migration of the dark side than the bright side of twin embryos in both pure Mg and Mg alloys. All solute atoms tested in this work exhibit a pinning effect on the motion of twin facets on the dark side. The motion of facets on the bright side, particularly twin boundaries, can be accelerated by solutes. Therefore, the majority of solutes can reduce the velocity difference between the dark side and bright side of the twin. The overall twin embryo growth is restricted in most alloys except Mg-Y, Mg-Li, and Mg-Nd with certain solute concentrations. Our results present important insights for developing more efficient, more durable, stronger, lighter, and safer structural materials.
Additional file 1 of On the relevance of technical variation due to building pools in microarray experiments
Creators: name: Rudolf, Henrik
name: Nuernberg, Gerd
name: Koczan, Dirk
name: Vanselow, Jens
name: Gempe, Tanja
name: Beye, Martin
name: GĂŠrard Leboulle
name: Bienefeld, Kaspar
name: Reinsch, Norbert
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Computational Biology

description: Matrices for EM-REML and Mixed model equations. This file shows various matrices for the experimental data sets in detail. These matrices are explained in the Materials and Methods section. (PDF 48 kb)
Euryoryzomys Weksler, Percequillo & Voss 2006
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Cricetidae
Euryoryzomys

description: Euryoryzomys Weksler, Percequillo & Voss 2006
The genus Euryoryzomys comprises six species, E. emmonsae (Musser, Carleton, Gardner & Brothers 1998), E. lamia (Thomas 1901), E. legatus (Thomas 1925), E. macconnelli (Thomas 1910), E. nitidus (Thomas 1884), and E. russatus (Wagner 1848). The species inhabit forests throughout the cis Andean tropical and subtropical lowlands of South America, including Amazonia, the Guianas, southeastern Brazil, eastern Bolivia, northern Argentina, and eastern Paraguay (Musser et al. 1998; Weksler et al. 2006; Percequillo 2015c). All cytogenetic data available for the genus was presented on Table 3, and the distribution of diploid and fundamental number of karyotyped specimens were presented on Fig. 3.
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 13, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Additional file 1: of Real-world cost analysis of chemotherapy for colorectal cancer in Japan: detailed costs of various regimens during the entire course of chemotherapy
Creators: name: Yajima, Shuichi
name: Shimizu, Hisanori
name: Sakamaki, Hiroyuki
name: Shunya Ikeda
name: Ikegami, Naoki
name: Jun-Ichiro Murayama
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Pharmacology
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer

description: Schedule of each regimen. (DOCX 15Â kb)
Euryoryzomys emmonsae
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Cricetidae
Euryoryzomys
Euryoryzomys emmonsae

description: Euryoryzomys emmonsae
Karyotype: 2n = 80 and FN = 86. Autosomal complement: four small metacentric and submetacentric pairs, and 35 acrocentric pairs (one distinctly large and the remaining large to small decreasing in size). Sex chromosomes: X, a very large subtelocentric; Y, a small acrocentric (Musser et al. 1998, pp. 237, Fig. 109). According to Musser et al. (1998), some acrocentric autosomes have short second arms and could be classed as biarmed, but the FN was based on classifying them as uniarmed chromosomes (if these pairs were classified as biarmed, the FN of this species would be 90, but this review considers the FN = 86).
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 13, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Additional file 1: of Pre-clinical evaluation of therapies to prevent or treat bone non-union: a systematic review protocol
Creators: name: Stewart, Sarah
name: Bennett, Philippa
name: Stapley, Sarah
name: Dretzke, Janine
name: Bem, Danai
name: Jowan Penn-Barwell
Publisher: name: Figshare
Year: 2015
Subjects: Space Science
Medicine
Biotechnology
Cancer
Hematology

description: Sample search strategy for PubMed. (DOCX 15Â kb)
Additional file 2: of Pre-clinical evaluation of therapies to prevent or treat bone non-union: a systematic review protocol
Creators: name: Stewart, Sarah
name: Bennett, Philippa
name: Stapley, Sarah
name: Dretzke, Janine
name: Bem, Danai
name: Jowan Penn-Barwell
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Data collection form. (DOCX 30Â kb)