cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 12: Figure S10. of Transcriptomic changes in the plant pathogenic fungus Rhizoctonia solani AG-3 in response to the antagonistic bacteria Serratia proteamaculans and Serratia plymuthica
Creators: name: Gkarmiri, Konstantia
name: Finlay, Roger
name: Alstrรถm, Sadhna
name: Thomas, Elizabeth
name: Cubeta, Marc
name: Hรถgberg, Nils
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Comparison of Molecular Function annotations of R. solani genes between S4 Serratia proteamaculans and AS13 Serratia plymuthica treatments. a) Bar Chart of Gene Ontology (GO) annotations between S4-AS13 upregulated genes, b) Bar Chart of GO annotations between S4-AS13 downregulated genes (Values taken from WEGO).
Gesaia Kirtley 1994
Creators: name: Zhang, Jinghuai
name: Hutchings, Pat
name: Burghardt, Ingo
name: Kupriyanova, Elena
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Polychaeta
Sabellida
Sabellariidae
Gesaia

description: Genus Gesaia Kirtley, 1994
Type species. Phalacrostemma elegans Fauvel, 1911.
Type locality. Off Madeira Archipelago, in 1968 m.
Diagnosis (from Capa & Hutchings, 2019). Operculum completely divided into two elongate lobes and distal disc perpendicular to operculum. Few (4–8) pairs of long and conical papillae spirally arranged from nuchal hook to ventral distal end of opercular lobes. Three to five tentacular filaments along margins of buccal cavity. Buccal flaps absent. Pair of fine palps longer than operculum. Median organ at dorsal junction of opercular lobes. Outer paleae arranged in semicircle or spiral, with cylindrical or slightly flattened blades, with frayed thecae and distal ends rolled inward. Inner paleae arranged on dorsal inner margin of opercular lobes, with straight cylindrical and smooth blades. Pair of nuchal hooks without limbation. Neuropodia of segment 1 with two to three pairs of cirri. Thoracic branchiae present. Four parathoracic segments. Parathoracic notopodia with robust lanceolate chaetae and fine capillaries, neuropodia with capillaries only.
Remarks. Kirtley (1994) erected the genus Gesaia with eight species collected from depths 770–5790 m (Table 2). The genus differs from other sabellariid genera by having a pair of elongated and well separated elongate opercular lobes and cylindrical outer paleae with distal ends rolled inward, distal disc of opercular lobes positioned perpendicular to longitudinal axis of operculum, few (generally one) pairs of nuchal hooks without limbation, and four parathoracic segments. Kirtley (1994) described seven new species of Gesaia mainly based on the ornamentation of the outer paleae, but did not provide any details of the body. The genus Gesaia has only previously been recorded from Australian waters as a larva collected in plankton samples at Lizard Island (Capa et al. 2012), although Hutchings et al. (2012) indicated that the genus was absent from Australian waters.
description: Published as part of Zhang, Jinghuai, Hutchings, Pat, Burghardt, Ingo & Kupriyanova, Elena, 2020, Two new species of Sabellariidae (Annelida, Polychaeta) from the abyss of eastern Australia, pp. 487-510 in Zootaxa 4821 (3) on page 489, DOI: 10.11646/zootaxa.4821.3.4, http://zenodo.org/record/4401032
Framed transfers and motivic fundamental classes
Creators: name: Elmanto, Elden
name: Hoyois, Marc
name: Khan, Adeel A.
name: Sosnilo, Vladimir
name: Yakerson, Maria
Publisher: name: Universität Regensburg
Year: 2020
Subjects: subject: K-THEORY; OPERATIONS; CYCLES; 14F42 (primary); 14C17 (secondary)
subject: 510 Mathematik

description: We relate the recognition principle for infinite P1-loop spaces to the theory of motivic fundamental classes of Deglise, Jin and Khan. We first compare two kinds of transfers that are naturally defined on cohomology theories represented by motivic spectra: the framed transfers given by the recognition principle, which arise from Voevodsky's computation of the Nisnevish sheaf associated with An/(An-0), and the Gysin transfers defined via Verdier's deformation to the normal cone. We then introduce the category of finite R-correspondences for R a motivic ring spectrum, generalizing Voevodsky's category of finite correspondences and Calmes and Fasel's category of finite Milnor-Witt correspondences. Using the formalism of fundamental classes, we show that the natural functor from the category of framed correspondences to the category of R-module spectra factors through the category of finite R-correspondences.
Additional file 7: Figure S5. of Transcriptomic changes in the plant pathogenic fungus Rhizoctonia solani AG-3 in response to the antagonistic bacteria Serratia proteamaculans and Serratia plymuthica
Creators: name: Gkarmiri, Konstantia
name: Finlay, Roger
name: Alstrรถm, Sadhna
name: Thomas, Elizabeth
name: Cubeta, Marc
name: Hรถgberg, Nils
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Over- (a.) and under- (b.) represented Gene Ontology (GO) terms of R. solani genes down-regulated when confronted with S4 Serratia proteamaculans.
Alfvén Waves in Solar Flares
Creators: name: Russell, Alexander J. B.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: Solar flares are dramatic events in which magnetic reconnection in the corona leads to heating of plasma to tens of MK and acceleration of particles to high energies. They also centrally involve transport between the corona (where the magnetic reconnection occurs) and the lower solar atmosphere (where most energy is radiated from). There is substantial evidence for the presence of Alfvénic waves/turbulence in solar flares, for example, in the ubiquitous nonthermal broadening of flare spectral lines. The physical role that Alfvénic waves have in the flare has attracted considerable attention, especially since 2007-2010. This article reviews what spectroscopic observations reveal about the properties and importance of Alfvénic waves, turbulence and transport in solar flares; mechanisms for wave excitation by magnetic reconnection at high Lundquist numbers and braking of the sunward reconnection jet; and models of wave energy transport to the lower atmosphere and the resulting heating and dynamics. The article finishes with discussion of the outlook for new progress.
description: Accepted for publication in "Alfv\'en Waves Across Heliophysics: Progress, Challenges, and Opportunities" (American Geophysical Union). Further reproduction or electronic distribution is not permitted
On the Mathematical Foundations of Causal Fermion Systems in Minkowski Space
Creators: name: Oppio, Marco
Publisher: name: Universität Regensburg
Year: 2020
Subjects: subject: 510 Mathematik

description: The emergence of the concept of a causal fermion system is revisited and further investigated for the vacuum Dirac equation in Minkowski space. After a brief recap of the Dirac equation and its solution space, in order to allow for the effects of a possibly nonstandard structure of spacetime at the Planck scale, a regularization by a smooth cutoff in momentum space is introduced, and its properties are discussed. Given an ensemble of solutions, we recall the construction of a local correlation function, which realizes spacetime in terms of operators. It is shown in various situations that the local correlation function maps spacetime points to operators of maximal rank and that it is closed and homeomorphic onto its image. It is inferred that the corresponding causal fermion systems are regular and have a smooth manifold structure. The cases considered include a Dirac sea vacuum and systems involving a finite number of particles and antiparticles.
Probing the superconducting pairing of the La$_{4}$Be$_{33}$Pt$_{16}$ alloy via muon-spin spectroscopy
Creators: name: Shang, Tian
name: Svanidze, Eteri
name: Shiroka, Toni
Publisher: name: arXiv
Year: 2023
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We report a study of the superconducting pairing of the noncentrosymmetric La$_{4}$Be$_{33}$Pt$_{16}$ alloy using muon-spin rotation and relaxation ($μ$SR) technique. Below $T_c = 2.4$ K, La$_{4}$Be$_{33}$Pt$_{16}$ exhibits bulk superconductivity (SC), here characterized by heat-capacity and magnetic-susceptibility measurements. The temperature dependence of the superfluid density $ρ_\mathrm{sc}(T)$, extracted from the transverse-field {\textmu}SR measurements, reveals a nodeless SC in La$_{4}$Be$_{33}$Pt$_{16}$. The best fit of $ρ_\mathrm{sc}(T)$ using an $s$-wave model yields a magnetic penetration depth $λ_0 = 542$ nm and a superconducting gap $Δ_0 = 0.37$ meV at zero Kelvin. The single-gapped superconducting state is further evidenced by the temperature-dependent electronic specific heat $C_\mathrm{e}(T)/T$ and the linear field-dependent electronic specific-heat coefficient $γ_\mathrm{H}(H)$. The zero-field $μ$SR spectra collected in the normal- and superconducting states of La$_{4}$Be$_{33}$Pt$_{16}$ are almost identical, confirming the absence of an additional field-related relaxation and, thus, of spontaneous magnetic fields below $T_c$. The nodeless SC combined with a preserved time-reversal symmetry in the superconducting state prove that the spin-singlet pairing is dominant in La$_{4}$Be$_{33}$Pt$_{16}$. This material represents yet another example of a complex system showing only a conventional behavior, in spite of a noncentrosymmetric structure and a sizeable spin-orbit coupling.
description: 13 pages, 4 figures
Seasonal-Scale Paleoclimate Reconstruction of the Mid-Pliocene Warm Period Using High-Resolution Stable Isotope, Trace Element, and Clumped-Isotope Analysis of Fossil Molluscan Carbonate from the Yorktown Formation, Virginia
Creators: name: Lynch, Ryan
Publisher: name: My University
Year: 2024

description: The mid-Pliocene Warm Period (mPWP) is an interval in Earth’s climatic history characterized by warm conditions and atmospheric CO2 concentrations comparable to the present. Because of this, the mPWP offers a critical analogue for understanding future global warming. This study examines the paleoclimate of the mPWP on a seasonal-scale by employing high resolution isotopic and trace element analysis of the marine bivalve Mercenaria from the mid-Pliocene age Yorktown Formation in Virginia. δ18O and δ13C records show seasonal variation and act as a proxy for past sea surface temperatures. A reduction in seasonal temperature variations is observed in the mPWP (10.6°C) compared to present (21.1°C), accounted for by warmer winter and cooler summer conditions. Further analysis of trace elements (Sr/Ca, Mg/Ca, Ba/Ca, Mn/Ca, Fe/Ca, and Zn/Ca) provide additional constraints on paleoenvironmental reconstructions and suggest the potential influence of upwelling. Preliminary clumped-isotope analyses contrast with the upwelling hypothesis and are suggestive of riverine input of freshwater. Future work will continue to make use of clumped isotope analysis to better constrain paleotemperatures and δ18O𝑠w values for the mid-Pliocene.
Additional file 1: Figure S1. of Transcriptomic changes in the plant pathogenic fungus Rhizoctonia solani AG-3 in response to the antagonistic bacteria Serratia proteamaculans and Serratia plymuthica
Creators: name: Gkarmiri, Konstantia
name: Finlay, Roger
name: Alström, Sadhna
name: Thomas, Elizabeth
name: Cubeta, Marc
name: Högberg, Nils
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Box plot analysis of FPKM values distributions for the gene expression of R. solani triplicates grown in monoculture (C_0, C_1, C_2) and during challenge with a) S4 Serratia proteamaculans and b) AS13 Serratia plymuthica bacteria of the nine obtained RNA-seq libraries. (FPMK = fragments per kilobase of exon per million fragments mapped).
MPEC 2024-J01 : 2024 HF2
Creators: name: Minor Planet Center Staff
Publisher: name: The Minor Planet Center
Year: 2024
Subjects: subject: Small Solar System bodies
valueUri: http://astrothesaurus.org/uat/1469
subject: 2024 HF2

description: The Minor Planet Electronic Circulars contain information on unusual minor planets, routine data on comets and natural satellites, and occasional editorial announcements.  They are published on behalf of Division F of the International Astronomical Union by the Minor Planet Center, Smithsonian Astrophysical Observatory, Cambridge, MA 02138, U.S.A.
MOESM1 of
                     Plasmodium malariae and Plasmodium ovale infections in the Chinaâ  Myanmar border area
Creators: name: Peipei Li
name: Zhenjun Zhao
name: Xing, Hua
name: Wenli Li
name: Xiaotong Zhu
name: Yaming Cao
name: Zhaoqing Yang
name: Jetsumon Sattabongkot
name: Guiyun Yan
name: Fan, Qi
name: Liwang Cui
Publisher: name: Figshare
Year: 2016
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. PCR primer sequences and reaction conditions.
MOESM8 of
                     Plasmodium malariae and Plasmodium ovale infections in the Chinaâ  Myanmar border area
Creators: name: Peipei Li
name: Zhenjun Zhao
name: Xing, Hua
name: Wenli Li
name: Xiaotong Zhu
name: Yaming Cao
name: Zhaoqing Yang
name: Jetsumon Sattabongkot
name: Guiyun Yan
name: Fan, Qi
name: Liwang Cui
Publisher: name: Figshare
Year: 2016
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 8. Sequence alignment of PmDHPS.
MOESM3 of
                     Plasmodium malariae and Plasmodium ovale infections in the Chinaâ  Myanmar border area
Creators: name: Peipei Li
name: Zhenjun Zhao
name: Xing, Hua
name: Wenli Li
name: Xiaotong Zhu
name: Yaming Cao
name: Zhaoqing Yang
name: Jetsumon Sattabongkot
name: Guiyun Yan
name: Fan, Qi
name: Liwang Cui
Publisher: name: Figshare
Year: 2016
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3. Discrepancies in diagnosis between microscopy and PCR.
Near-Field Wideband Secure Communications: An Analog Beamfocusing Approach
Creators: name: Zhang, Yuchen
name: Zhang, Haiyang
name: Xiao, Sa
name: Tang, Wanbin
name: Eldar, Yonina C.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Signal Processing (eess.SP)
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: In the rapidly advancing landscape of 6G, characterized by ultra-high-speed wideband transmission in millimeter-wave and terahertz bands, our paper addresses the pivotal task of enhancing physical layer security (PLS) within near-field wideband communications. We introduce true-time delayer (TTD)-incorporated analog beamfocusing techniques designed to address the interplay between near-field propagation and wideband beamsplit, an uncharted domain in existing literature. Our approach to maximizing secrecy rates involves formulating an optimization problem for joint power allocation and analog beamformer design, employing a two-stage process encompassing a semi-digital solution and analog approximation. This problem is efficiently solved through a combination of alternating optimization, fractional programming, and block successive upper-bound minimization techniques. Additionally, we present a low-complexity beamsplit-aware beamfocusing strategy, capitalizing on geometric insights from near-field wideband propagation, which can also serve as a robust initial value for the optimization-based approach. Numerical results substantiate the efficacy of the proposed methods, clearly demonstrating their superiority over TTD-free approaches in fortifying wideband PLS, as well as the advantageous secrecy energy efficiency achieved by leveraging low-cost analog devices.
description: This work has been submitted to IEEE journal for publication
Additional file 3: of Integrating transcriptomics and metabolomics to characterise the response of Astragalus membranaceus Bge. var. mongolicus (Bge.) to progressive drought stress
Creators: name: Jia, Xin
name: Chuangshu Sun
name: Yongchun Zuo
name: Guangyue Li
name: Guobin Li
name: Liangyu Ren
name: Guilin Chen
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Table S3.. The genes that were only up-regulated or only down-regulated during the three stages of drought stress. (DOCX 17 kb)
Additional file 2: of Integrating transcriptomics and metabolomics to characterise the response of Astragalus membranaceus Bge. var. mongolicus (Bge.) to progressive drought stress
Creators: name: Jia, Xin
name: Chuangshu Sun
name: Yongchun Zuo
name: Guangyue Li
name: Guobin Li
name: Liangyu Ren
name: Guilin Chen
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Table S2. List of the top 100 highly expressed genes in the severe stage of drought stress (day 14). (DOCX 18 kb)
Additional file 1: of Integrating transcriptomics and metabolomics to characterise the response of Astragalus membranaceus Bge. var. mongolicus (Bge.) to progressive drought stress
Creators: name: Jia, Xin
name: Chuangshu Sun
name: Yongchun Zuo
name: Guangyue Li
name: Guobin Li
name: Liangyu Ren
name: Guilin Chen
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Table S1. List of the top 100 highly expressed genes in the early phase of drought stress (day 6). (DOCX 19 kb)
Additional file 6: of Identification and comprehensive analyses of the CBL and CIPK gene families in wheat (Triticum aestivum L.)
Creators: name: Sun, Tao
name: Wang, Yan
name: Wang, Meng
name: Tingting Li
name: Zhou, Yi
name: Xiatian Wang
name: Shuya Wei
name: Guangyuan He
name: Guangxiao Yang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology
subject: 60506 Virology

description: Analysis of SnRK proteins of representative species. (PDF 420Â kb)
Additional file 6: of Integrating transcriptomics and metabolomics to characterise the response of Astragalus membranaceus Bge. var. mongolicus (Bge.) to progressive drought stress
Creators: name: Jia, Xin
name: Chuangshu Sun
name: Yongchun Zuo
name: Guangyue Li
name: Guobin Li
name: Liangyu Ren
name: Guilin Chen
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology

description: Table S5. The metabolite content in the A. mongolicus roots under different stages of progressive drought stress. (DOCX 21 kb)
Additional file 9: of Identification and comprehensive analyses of the CBL and CIPK gene families in wheat (Triticum aestivum L.)
Creators: name: Sun, Tao
name: Wang, Yan
name: Wang, Meng
name: Tingting Li
name: Zhou, Yi
name: Xiatian Wang
name: Shuya Wei
name: Guangyuan He
name: Guangxiao Yang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology
subject: 60506 Virology

description: Putative ABRE, DRE and LTRE core sequences in the 1-kb promoter regions of the stress-inducible genes. (PDF 114Â kb)
Stable integral simplicial volume of 3‐manifolds
Creators: name: Fauser, Daniel
name: Löh, Clara
name: Moraschini, Marco
name: Quintanilha, José Pedro
Publisher: name: Universität Regensburg
Year: 2021
Subjects: subject: 55N10; 57N65; 57K31 (primary)
subject: 510 Mathematik

description: We show that non-elliptic prime 3-manifolds satisfy integral approximation for the simplicial volume, that is, that their simplicial volume equals the stable integral simplicial volume. The proof makes use of integral foliated simplicial volume and tools from ergodic theory.
A comparison of the real and non-archimedean Monge–Ampère operator
Creators: name: Vilsmeier, Christian
Publisher: name: Universität Regensburg
Year: 2021
Subjects: subject: LOCAL PROPERTIES; ANALYTIC SPACES; COHOMOLOGY; GEOMETRY; HEIGHTS; THEOREM; Monge-Ampere operator; Berkovich spaces; Metrics; Tropical geometry
subject: 510 Mathematik

description: Let X be a proper algebraic variety over a non-archimedean, non-trivially valued field. We show that the non-archimedean Monge-Ampere measure of a metric arising from a convex function on an open face of some skeleton of Xanis equal to the real Monge-Ampere measure of that function up to multiplication by a constant. As a consequence we obtain a regularity result for solutions of the non-archimedean Monge-Ampere problem on curves.
On a degenerate parabolic system describing the mean curvature flow of rotationally symmetric closed surfaces
Creators: name: Garcke, Harald
name: Matioc, Bogdan-Vasile
Publisher: name: Universität Regensburg
Year: 2020
Subjects: subject: REGULARITY; SINGULARITIES; ANALYTICITY; INTERFACE; Mean curvature flow; Degenerate parabolic equation; Maximal regularity; Parabolic smoothing
subject: 510 Mathematik
subject: 35K55-53C44-35R35-35K93

description: We show that the mean curvature flow for a closed and rotationally symmetric surface can be formulated as an evolution problem consisting of an evolution equation for the square of the function whose graph is rotated and two ODEs describing the evolution of the points of the evolving surface that lie on the rotation axis. For the fully nonlinear and degenerate parabolic problem we establish the well-posedness property in the setting of classical solutions. Besides we prove that the problem features the effect of parabolic smoothing.
Cyclic homology for bornological coarse spaces
Creators: name: Caputi, Luigi
Publisher: name: Universität Regensburg
Year: 2020
Subjects: subject: K-THEORY; K-theory and homology; Algebraic Topology; Coarse Geometry
subject: 510 Mathematik

description: The goal of the paper is to define Hochschild and cyclic homology for bornological coarse spaces, i.e., lax symmetric monoidal functors XHHG and XHCG from the category GBornCoarse of equivariant bornological coarse spaces to the cocomplete stable infinity-category Ch(infinity) of chain complexes reminiscent of the classical Hochschild and cyclic homology. We investigate relations to coarse algebraic K-theory X K-G and to coarse ordinary homology XHG by constructing a trace-like natural transformation X K-G -> XHG that factors through coarse Hochschild (and cyclic) homology. We further compare the forget-control map for XHHG with the associated generalized assembly map.
A comparison of positivity in complex and tropical toric geometry
Creators: name: Burgos Gil, José Ignacio
name: Gubler, Walter
name: Jell, Philipp
name: Künnemann, Klaus
Publisher: name: Universität Regensburg
Year: 2021
Subjects: subject: Toric varieties; Tropicalization; Positive currents; Lagerberg forms
subject: 510 Mathematik

description: Given a smooth complex toric variety we will compare real Lagerberg forms and currents on its tropicalization with invariant complex forms and currents on the toric variety. Our main result is a correspondence theorem which identifies the cone of invariant closed positive currents on the complex toric variety with closed positive currents on the tropicalization. In a subsequent paper, this correspondence will be used to develop a Bedford-Taylor theory of plurisubharmonic functions on the tropicalization.
Sharp Interface Limit of a Stokes/Cahn–Hilliard System, Part II: Approximate Solutions
Creators: name: Abels, Helmut
name: Marquardt, Andreas
Publisher: name: Universität Regensburg
Year: 2021
Subjects: subject: Two-phase flow; Diffuse interface model; Sharp interface limit; Cahn-Hilliard equation; Free boundary problems
subject: 510 Mathematik

description: We construct rigorously suitable approximate solutions to the Stokes/Cahn-Hilliard system by using the method of matched asymptotics expansions. This is a main step in the proof of convergence given in the first part of this contribution, [3], where the rigorous sharp interface limit of a coupled Stokes/Cahn-Hilliard system in a two dimensional, bounded and smooth domain is shown. As a novelty compared to earlier works, we introduce fractional order terms, which are of significant importance, but share the problematic feature that they may not he uniformly estimated in e in arbitrarily strong norms. As a consequence, gaining necessary estimates for the error, which occurs when considering the approximations in the Stokes/Cahn-Hilliard system, is rather involved.
Additional file 2: of Identification and comprehensive analyses of the CBL and CIPK gene families in wheat (Triticum aestivum L.)
Creators: name: Sun, Tao
name: Wang, Yan
name: Wang, Meng
name: Tingting Li
name: Zhou, Yi
name: Xiatian Wang
name: Shuya Wei
name: Guangyuan He
name: Guangxiao Yang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Plant Biology
subject: 60506 Virology

description: Forward and reverse primers used in gene cloning, expression and vector constructions. (DOC 72Â kb)
Additional file 4: of Integrating transcriptomics and metabolomics to characterise the response of Astragalus membranaceus Bge. var. mongolicus (Bge.) to progressive drought stress
Creators: name: Jia, Xin
name: Chuangshu Sun
name: Yongchun Zuo
name: Guangyue Li
name: Guobin Li
name: Liangyu Ren
name: Guilin Chen
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology

description: Figure S1. A typical 600Â MHz 1H NMR spectra of methanol extracts obtained from the A. mongolicus roots. (DOCX 256 kb)
Additional file 5: of Identification and comprehensive analyses of the CBL and CIPK gene families in wheat (Triticum aestivum L.)
Creators: name: Sun, Tao
name: Wang, Yan
name: Wang, Meng
name: Tingting Li
name: Zhou, Yi
name: Xiatian Wang
name: Shuya Wei
name: Guangyuan He
name: Guangxiao Yang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology
subject: 60506 Virology

description: Analysis of EF-hand motifs in calcium binding proteins of representative species. (PDF 147Â kb)
Additional file 3: of Identification and comprehensive analyses of the CBL and CIPK gene families in wheat (Triticum aestivum L.)
Creators: name: Sun, Tao
name: Wang, Yan
name: Wang, Meng
name: Tingting Li
name: Zhou, Yi
name: Xiatian Wang
name: Shuya Wei
name: Guangyuan He
name: Guangxiao Yang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Hematology
subject: Plant Biology
subject: 60506 Virology

description: The genome DNA, cDNA and protein sequences of all identified CBL and CIPK of T. aestivum, T. urartu and A. tauschii. (DOC 1296Â kb)
Additional file 4: of Identification and comprehensive analyses of the CBL and CIPK gene families in wheat (Triticum aestivum L.)
Creators: name: Sun, Tao
name: Wang, Yan
name: Wang, Meng
name: Tingting Li
name: Zhou, Yi
name: Xiatian Wang
name: Shuya Wei
name: Guangyuan He
name: Guangxiao Yang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: Plant Biology
subject: 60506 Virology

description: Exon-intron analysis of TaCBLs and TaCIPKs in wheat. (PDF 1435Â kb)
Additional file 7: Figure S1. of RNAi-mediated down-regulation of the expression of OsFAD2-1: effect on lipid accumulation and expression of lipid biosynthetic genes in the rice grain
Creators: name: Tiwari, Gopal
name: Liu, Qing
name: Pushkar Shreshtha
name: Zhongyi Li
name: Sadequr Rahman
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: (DOCX 122Â kb)
Additional file 8: of Identification and comprehensive analyses of the CBL and CIPK gene families in wheat (Triticum aestivum L.)
Creators: name: Sun, Tao
name: Wang, Yan
name: Wang, Meng
name: Tingting Li
name: Zhou, Yi
name: Xiatian Wang
name: Shuya Wei
name: Guangyuan He
name: Guangxiao Yang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology
subject: 60506 Virology

description: The bimolecular fluorescence complementation experiments. (PDF 310Â kb)
Additional file 1: of Identification and comprehensive analyses of the CBL and CIPK gene families in wheat (Triticum aestivum L.)
Creators: name: Sun, Tao
name: Wang, Yan
name: Wang, Meng
name: Tingting Li
name: Zhou, Yi
name: Xiatian Wang
name: Shuya Wei
name: Guangyuan He
name: Guangxiao Yang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: Plant Biology

description: Chromosomal distribution of wheat TaCBL and TaCIPK genes identified in this study. The chromosome number is indicated on the top of each chromosome. (PDF 788Â kb)
Additional file 7: of Identification and comprehensive analyses of the CBL and CIPK gene families in wheat (Triticum aestivum L.)
Creators: name: Sun, Tao
name: Wang, Yan
name: Wang, Meng
name: Tingting Li
name: Zhou, Yi
name: Xiatian Wang
name: Shuya Wei
name: Guangyuan He
name: Guangxiao Yang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology
subject: 60506 Virology

description: The interaction analysis of wheat TaCBL and TaCIPK proteins were performed by Y2H method. (PDF 191Â kb)
Additional file 4: Table S1. of RNAi-mediated down-regulation of the expression of OsFAD2-1: effect on lipid accumulation and expression of lipid biosynthetic genes in the rice grain
Creators: name: Tiwari, Gopal
name: Liu, Qing
name: Pushkar Shreshtha
name: Zhongyi Li
name: Sadequr Rahman
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: (DOCX 17Â kb)
Étale cohomology of rank one ℓ-adic local systems in positive characteristic
Creators: name: Esnault, Hélène
name: Kerz, Moritz
Publisher: name: Universität Regensburg
Year: 2021
Subjects: subject: VANISHING THEOREMS; MODULI SPACES; CONJECTURE; SUBSPACES; CATANESE; SHEAVES
subject: 510 Mathematik

description: We show that in positive characteristic special loci of deformation spaces of rank one l-adic local systems are quasi-linear. From thiswe deduce the Hard Lefschetz theorem for rank one l-adic local systems and a generic vanishing theorem.
Bourgeois contact structures: Tightness, fillability and applications
Creators: name: Bowden, Jonathan
name: Gironella, Fabio
name: Moreno, Agustin
Publisher: name: Universität Regensburg
Year: 2022
Subjects: subject: WEINSTEIN CONJECTURE; CLASSIFICATION; PLASTIKSTUFE; MANIFOLDS; CURVES; DISK
subject: 510 Mathematik

description: Given a contact structure on a manifold V together with a supporting open book decomposition, Bourgeois gave an explicit construction of a contact structure on V x T-2. We prove that all such structures are universally tight in dimension 5, independent of whether the original contact manifold is itself tight or overtwisted. In arbitrary dimensions, we provide obstructions to the existence of strong symplectic fillings of Bourgeois manifolds. This gives a broad class of new examples of weakly but not strongly fillable contact 5-manifolds, as well as the first examples of weakly but not strongly fillable contact structures in all odd dimensions. These obstructions are particular instances of more general obstructions for S-1-invariant contact manifolds. We also obtain a classification result in arbitrary dimensions, namely that the unit cotangent bundle of the n-torus has a unique symplectically aspherical strong filling up to diffeomorphism.
Additional file 9: of Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality
Creators: name: Jiang, Yue
name: Xuejian Xiong
name: Danska, Jayne
name: Parkinson, John
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Physiology
subject: Pharmacology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Computational Biology

description: Global metabolic network indicating taxonomic representation of metabolic activities within the deepsea dataset. Global metabolic network indicating taxonomic representation of metabolic activities within the deepsea dataset. Pie charts indicate the relative proportion of each taxon, size of pie chart indicates relative expression (see key). Indicated are specific metabolic pathways. (PDF 2066 kb)
(Non-)convergence of solutions of the convective Allen–Cahn equation
Creators: name: Abels, Helmut
Publisher: name: Universität Regensburg
Year: 2021
Subjects: subject: Two-phase flow, Diffuse interface model, Allen–Cahn equation, Sharp interface limit
subject: 510 Mathematik
subject: 76T99 · 35Q30 · 35Q35 · 35R35 · 76D05 · 76D45

description: We consider the sharp interface limit of a convective Allen–Cahn equation, which can be part of a Navier–Stokes/Allen–Cahn system, for different scalings of the mobility mε=m0εθ as ε→0. In the case θ>2 we show a (non-)convergence result in the sense that the concentrations converge to the solution of a transport equation, but they do not behave like a rescaled optimal profile in normal direction to the interface as in the case θ=0. Moreover, we show that an associated mean curvature functional does not converge to the corresponding functional for the sharp interface. Finally, we discuss the convergence in the case θ=0,1 by the method of formally matched asymptotics.
Additional file 8: of Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality
Creators: name: Jiang, Yue
name: Xuejian Xiong
name: Danska, Jayne
name: Parkinson, John
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Physiology
subject: Pharmacology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Computational Biology

description: Global metabolic network indicating taxonomic representation of metabolic activities within the kimchi. Global metabolic network indicating taxonomic representation of metabolic activities within the kimchi dataset. Pie charts indicate the relative proportion of each taxon, size of pie chart indicates relative expression (see key). Indicated are specific metabolic pathways. (PDF 1352 kb)
Imaging Resonance Effects in C + H$_2$ Collisions using a Zeeman Decelerator
Creators: name: Plomp, Vikram
name: Wang, Xu-Dong
name: Kłos, Jacek
name: Dagdigian, Paul J.
name: Lique, François
name: Onvlee, Jolijn
name: van de Meerakker, Sebastiaan Y. T.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Atomic Physics (physics.atom-ph)
subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: An intriguing phenomenon in molecular collisions is the occurrence of scattering resonances, which originate from bound and quasi-bound states supported by the interaction potential at low collision energies. The resonance effects in the scattering behaviour are extraordinarily sensitive to the interaction potential, and their observation provides one of the most stringent tests for theoretical models. We present high-resolution measurements of state-resolved angular scattering distributions for inelastic collisions between Zeeman-decelerated C($^3P_1$) atoms and $\textit{para}$-H$_2$ molecules at collision energies ranging from 77 cm$^{-1}$ down to 0.5 cm$^{-1}$. Rapid variations in the angular distributions were observed that can be attributed to the consecutive reduction of contributing partial waves and effects of scattering resonances. The measurements showed excellent agreement with distributions predicted by $\textit{ab initio}$ quantum scattering calculations. However, discrepancies were found at specific collision energies, which most likely originate from an incorrectly predicted quasi-bound state. These observations provide exciting prospects for further high-precision and low-energy investigations of scattering processes that involve paramagnetic species.
title: Lists of Technical Reports of the University of Texas Marine Science Institute, 1985-2015
Creators: name: DeHart, Liz
Publisher: name: The University of Texas at Austin
Year: 2024
Subjects: subject: MSI

description: List of Technical Reports of the University of Texas Marine Science Institute, 1985-2015 sorted by author and sorted by year.
description: Where possible technical reports in this document are hyperlinked, but not all the hyperlinks are underlined or in another color. Hover your mouse over the text to find hyperlinks.
Shell-crossings and shock formation during gravitational collapse in effective loop quantum gravity
Creators: name: Fazzini, Francesco
name: Husain, Viqar
name: Wilson-Ewing, Edward
Publisher: name: arXiv
Year: 2023
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Effective models of gravitational collapse in loop quantum gravity for the Lemaître-Tolman-Bondi spacetime predict that collapsing matter reaches a maximum finite density, bounces, and then expands outwards. We show that in the marginally bound case, shell-crossing singularities commonly occur for inhomogeneous initial profiles of the dust energy density; this is the case in particular for all profiles that are continuous and of compact support, including configurations arbitrarily close to the Oppenheimer-Snyder model. When a shell-crossing singularity occurs, it is necessary to seek weak solutions to the dynamics; we argue that weak solutions typically contain shock waves.
description: 12 pages, 1 figure. v2: Clarifications and references added
Stability analysis for stationary solutions of the Mullins-Sekerka flow with boundary contact
Creators: name: Garcke, Harald
name: Rauchecker, Maximilian
Publisher: name: Universität Regensburg
Year: 2022
Subjects: subject: SURFACE-DIFFUSION; CONVERGENCE; EQUILIBRIA; contact angle; free boundary problem; Mullins-Sekerka problem; stability
subject: 510 Mathematik
subject: 35B35, 35B40, 35R35, 53A10

description: We first give a complete linearized stability analysis around stationary solutions of the Mullins-Sekerka flow with 90 degrees contact angle in two space dimensions. The stationary solutions include flat interfaces, as well as arcs of circles. We investigate the different stability behaviour in dependence of properties of the stationary solution, such as its curvature and length, as well as the curvature of the boundary of the domain at the two contact points. We show that the behaviour changes in terms of these parameters, ranging from exponential stability to instability. We also give a first result on nonlinear stability for curved boundaries.
Additional file 11: of Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality
Creators: name: Jiang, Yue
name: Xuejian Xiong
name: Danska, Jayne
name: Parkinson, John
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Computational Biology

description: Detailed views of taxonomic contributions to specific components of the alanine, aspartate and glutamate pathways for four metatranscriptomic datasets. Each schematic indicates the taxonomic representation of enzymatic activities involved in the alanine, aspartate and glutamate pathways for four metatranscriptome datasets: mouse, kimchi, cow and deep sea. Pie charts indicate enzymes, with coloured sectors indicating the relative proportion of each taxon, size of pie chart indicates relative expression (see key). Small triangles indicate substrates with links indicating enzyme-substrate relationships. (PDF 658 kb)