cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Isolation and spectral characterization of thermally generated multi-Z-isomers of lycopene and the theoretically preferred pathway to di-Z-isomers
Creators: name: Honda, Masaki
name: Kudo, Tatsuya
name: Kuwa, Takahiro
name: Higashiura, Takuma
name: Fukaya, Tetsuya
name: Inoue, Yoshinori
name: Chitoshi Kitamura
name: Munenori Takehara
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Cancer

description: Lycopene has a large number of geometric isomers caused by E/Z isomerization at arbitrary sites within the 11 conjugated double bonds, offering varying characteristics related to features such as antioxidant capacity and bioavailability. However, the geometric structures of only a few lycopene Z-isomers have been thoroughly identified from natural sources. In this study, seven multi-Z-isomers of lycopene, (9Z,13′Z)-, (5Z,13Z,9′Z)-, (9Z,9′Z)-, (5Z,13′Z)-, (5Z,9′Z)-, (5Z,9Z,5′Z)-, and (5Z,9Z)-lycopene, were obtained from tomato samples by thermal isomerization, and then isolated by elaborate chromatography, and fully assigned using proton nuclear magnetic resonance. Moreover, the theoretically preferred pathway from (all-E)-lycopene to di-Z-isomers was examined with a computational approach using a Gaussian program. Fine-tuning of the HPLC separation conditions led to the discovery of novel multi-Z-isomers, and whose formation was supported by advanced theoretical calculations. Isolation and characterization of novel (multi-Z)-lycopene, and a possible potential energy diagram for the formation to the isomer.
Quantitative mapping of hippocampal synaptic memory engrams
Creators: name: Mainardi, Marco
name: Faraone, Andrea
name: Jacob, Ajesh
name: Gobbo, Francesco
name: Zentilin, Lorena
name: Cattaneo, Antonino
Publisher: name: Zenodo
Year: 2020

description: Abstract of the oral communication presented at the Annual Retreat of the Institute of Neuroscience of the Italian National Research Council, held in Pisa, October 2-4, 2019.
TNFα, PDGF, and TGFβ synergistically induce synovial lining hyperplasia via inducible PI3Kδ
Creators: name: Shibuya, Hideyuki
name: Yoshitomi, Hiroyuki
name: Murata, Koichi
name: Shio Kobayashi
name: Moritoshi Furu
name: Ishikawa, Masahiro
name: Fujii, Takayuki
name: Hiromu Ito
name: Matsuda, Shuichi
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Molecular Biology
subject: Pharmacology
subject: Ecology
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Marine Biology
subject: Cancer

description: Objectives. To determine the mechanism underlying hypertrophic synovium in rheumatoid arthritis (RA). Methods. We examined micromass cultures of fibroblast-like synoviocytes (FLSs) stimulated with tumor necrosis factor α (TNFα), platelet-derived growth factor (PDGF), and/or transforming growth factor β (TGFβ). The hypertrophic architecture of the micromasses, expression of phosphoinositide 3 kinase (PI3K) isoforms, and persistent activation of PI3K-Akt pathways were investigated. FLSs transfected with siRNA were also examined in the micromass cultures. Results. The combination of TNFα, PDGF, and TGFβ (TPT condition) induced obvious hypertrophic architecture of the intimal lining layer in FLSs in micromass cultures, and was accompanied by upregulated expression of matrix metalloproteinase-3 (MMP3), Cadherin-11, and PI3Kδ. In monolayer FLSs, the TPT condition enhanced the expression of PI3Kδ and persistent activation of the PI3K-Akt pathway. Knockdown of PI3Kδ significantly inhibited the formation of the hypertrophic synovial lining in the TPT condition. Conclusions. These results collectively indicate that inducible PI3Kδ plays a crucial role in persistent activation of PI3K-Akt in FLSs, and in the formation of a hypertrophic synovial lining. PI3Kδ may be an alternative treatment target for the regulation of proliferative synovium in RA.
CANSpiN: Zur computergestützten Analyse narrativen Raums im Roman des 19. und 20. Jahrhunderts
Creators: name: Lemke, Marc
name: Henny-Krahmer, Ulrike
name: Kellner, Nils
Publisher: name: Zenodo
Year: 2024
Subjects: DHd2024
Posterpräsentation
Raum
Literatur
Roman
Deep Learning
BERT
Entdeckung
Programmierung
Räumliche Analyse
Modellierung
Annotieren
Methoden

description: Mit unserer Einreichung stellen wir den aktuellen Arbeitsstand des Projekts »Computational Approaches to Narrative Space in 19th and 20th Century Novels« (CANSpiN) vor, das im Rahmen des DFG-Schwerpunktprogramms »Computational Literary Studies« (SPP 2207) von April 2023 bis März 2026 gefördert wird. Ziel des Vorhabens ist es, computergestützte Methoden zur Erkennung und Analyse narrativen Raums in literarischen Texten zu entwickeln und diese Methoden für die Untersuchung literaturhistorischer Fragen zum Verhältnis von Raum und nationaler Identität in deutsch- und spanischsprachigen Romanen des 19. und 20. Jahrhunderts zur Anwendung zu bringen. Dieser Zielsetzung entspricht die Zusammensetzung der Projektgruppe, die aus Wissenschaftler:innen der Germanistik, Romanistik, den Digital Humanities und der Mathematik besteht.
Purification and proteomic profiling of PSD-95 interactors at in vivo potentiated synapses
Creators: name: Mainardi, Marco
name: Gobbo, Francesco
name: Jacob, Ajesh
name: Zentilin Lorena
name: Caterino, Cinzia
name: Cellerino, Alessandro
name: Ori, Alessandro
name: Cattaneo, Antonino
Publisher: name: Zenodo
Year: 2020

description: Abstract from the oral communication at the Society for Neuroscience annual meeting held in San Diego (CA, USA), November 3-7, 2018. Authors M. Mainardi and F. Gobbo also co-chaired the nanosymposium "444 - LTP: Intracellular Signaling, Pre- and Post-synaptic mechanisms".
Antibacterial coating on in-line suction respiratory catheter to inhibit the bacterial biofilm formation using renewable cardanyl methacrylate copolymer
Creators: name: Denial Mahata
name: Ahindra Nag
name: Mandal, Santi M.
name: Golok B. Nando
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Health-care materials associated with infections are very common in hospital admitted patients. There are generally infected by contact with the catheter or other multipurpose devices which are contacted with microbes. The respiratory infections associated with the pathogens having strong biofilm forming ability on catheter surface, causes life-threatening in every year. Therefore, a catheter coating material is of great interest which inhibits the biofilm formation of pathogens on a catheter to prevent respiratory infections. In this study, we synthesized cardanol containing copolymers as antimicrobial healthcare material via radical polymerization of cardanyl methacrylate (CMA) with styrene (St) monomer in presence of free radical initiator. The rate of polymerization was drastically reduced with the increase of feeding CMA monomer in copolymer. The thermal and mechanical properties were found to increase with incorporation of cardanol moiety in brittle and hard polystyrene. This soft copolymer was grafted onto polyvinyl chloride respiratory catheter which showed high antibacterial activity, inhibit the biofilm formation and also prevent bacterial adhesion. Therefore, the developed coating material on respiratory catheter surface is effective way to control the respiratory catheter-associated nosocomial infections.
Proteomic characterization of the PSD-95 interactome selectively at in vivo potentiated synapses
Creators: name: Mainardi, Marco
name: Gobbo, Francesco
name: Faraone, Andrea
name: Jacob, Ajesh
name: Sorokina, Oksana
name: Zentilin, Lorena
name: Caterino, Cinzia
name: Marrone, Maria Cristina
name: Marinelli, Silvia
name: Cellerino, Alessandro
name: Armstrong, Douglas
name: Ori, Alessandro
name: Cattaneo, Antonino
Publisher: name: Zenodo
Year: 2020

description: Abstract of the poster presented at the "proMEMO - Proteins and Circuits in Memory" conference, held in Copenhagen, March 5-8, 2019.
Safety assessment and strategy using a risk-informed approach for the BWRX-300
Creators: name: Henneke, Dennis
Publisher: name: F1000 Research Limited
Year: 2024

description: This presentation was given as part of the American Nuclear Society Risk-informed, Performance-based Policy and Procedures Committee (RP3C) Community of Practice (CoP). For more information on the RP3C CoP, please visit https://www.ans.org/standards/rp3c/cop/.



This presentation took place on September 29, 2023.



The presentation video recording can be found online at https://youtu.be/EoAxqN_izmc.
Meshing ocean domains for coastal engineering applications
Creators: name: Avdis, Alexandros
name: Jacobs, Christian
name: Mouradian, Simon
name: Hill, Jon
name: Piggott, Matthew
Publisher: name: figshare
Year: 2017
Subjects: subject: 40403 Geophysical Fluid Dynamics
subject: FOS: Earth and related environmental sciences
subject: 91001 CAD/CAM Systems
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: 91501 Computational Fluid Dynamics
subject: FOS: Other engineering and technologies
subject: 91305 Energy Generation, Conversion and Storage Engineering
subject: FOS: Mechanical engineering
subject: 90701 Environmental Engineering Design
subject: FOS: Environmental engineering
subject: 90702 Environmental Engineering Modelling
subject: 90903 Geospatial Information Systems
subject: 91103 Ocean Engineering
subject: 90608 Renewable Power and Energy Systems Engineering (excl. Solar Cells)

description: Preprint of paper presented at the ECCOMAS Congress 2016 in Crete, Greece. Paper was accepted 18 March 2016, presented 7 June 2016. The final version is available in the congress proceedings:
https://www.eccomas2016.org/proceedings/pdf/7712.pdf
https://doi.org/10.7712/100016.1830.7712
Benefits of adoption of RIPB approaches for operating reactors' licensing and standards
Creators: name: Lawrence, Svetlana
name: N. Prasad Kadambi
Publisher: name: F1000 Research Limited
Year: 2024

description: This presentation was given as part of the American Nuclear Society Risk-informed, Performance-based Policy and Procedures Committee (RP3C) Community of Practice (CoP). For more information on the RP3C CoP, please visit https://www.ans.org/standards/rp3c/cop/.



This presentation took place on August 25, 2023.



The presentation video recording can be found online at https://youtu.be/xgcCOe75hmc.
Characterization of the potentiated synapse-specific PSD-95 interactome via activity-dependent in vivo expression of a proteomics probe
Creators: name: Mainardi, Marco
name: Gobbo, Francesco
name: Jacob, Ajesh
name: Faraone, Andrea
name: Sorokina, Oksana
name: Zentilin, Lorena
name: Marrone, Maria Cristina
name: Marinelli, Silvia
name: Cellerino, Alessandro
name: Armstrong, Douglas J
name: Ori, Alessandro
name: Cattaneo, Antonino
Publisher: name: Zenodo
Year: 2020

description: Abstract of the poster presented at the joint meeting of SIF - Italian Physiological Society and FEPS - Federation of European Physiological Societies, held in Bologna, September 10-13, 2019.
Curvature, metric and parametrization of origami tessellations: Theory and application to the eggbox pattern - Electronic Supplementary Material
Creators: name: H. Nassar
name: A. Lebée
name: L. Monasse
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Mechanics
subject: 20301 Acoustics and Acoustical Devices; Waves
subject: FOS: Physical sciences

description: Details regarding the determination of the Christoffel symbols and the out-of-plane Poisson's ratio of the eggbox pattern
Materials
Creators: name: Linzi Wilson-Wilde
name: Searston, Rachel A.
name: Corbett, Brooklyn
name: Thompson, Matthew B
name: Osborn, Scott
name: Hayes, Robert
name: Robson, Samuel G.
name: Edmond, Gary
name: McCarthy, Duncan
name: Raymond, Jennifer
name: Tangen, Jason M
name: Byard, Graham
name: Eva, Kevin
Publisher: name: OSF Registries
Year: 2019

description: The fingerprint images we used in this project were sourced from the NIST Special Database 300 (https://www.nist.gov/itl/iad/image-group/nist-special-database-300), which consists of 8871 rolled fingerprints, which were donated to NIST by the Federal Bureau of Investigation. Unfortunately, NIST has not made this special database openly available, and we do not have permission to "distribute it further, publish, copy, or disseminate it in any way or form whatsoever, whether for profit or not." If you’d like to access the images we used in this project, contact fingerprint_data@nist.gov to get permission from NIST to use the database (it’s freely available for biometrics related research, development, and education), forward Jason Tangen (uqjtange@uq.edu.au) the automated access email, and he’ll send you a link to the images we used in this project.
Table S2. from Growth overshoot and seasonal size changes in the skulls of two weasel species
Creators: name: LaPoint, Scott
name: Keicher, Lara
name: Wikelski, Martin
name: Zub, Karol
name: Dechmann, Dina K. N.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 60302 Biogeography and Phylogeography

description: ANOVAs on the optimal models, per species, with the addition of an interaction between the smooth term (day of year) and each factor, suggest (via p< 0.05) that the predictions would be improved by applying a smooth term to each level within a factor separately, except for sex in M. erminea. Thus, as the different levels within most factors differ in the shape of their response curve, we find support to consider factor levels separately.
Sequences
Creators: name: Searston, Rachel A.
name: Tangen, Jason M
name: Robson, Samuel G.
name: Osborn, Scott
name: Byard, Graham
name: Eva, Kevin
name: Thompson, Matthew B
name: Raymond, Jennifer
name: Linzi Wilson-Wilde
name: Hayes, Robert
name: McCarthy, Duncan
name: Corbett, Brooklyn
name: Edmond, Gary
Publisher: name: OSF Registries
Year: 2019

description: This component contains the full set of 64 pre-generated participant sequences as unique .txt files that are read into the experiment software (see Software component for this project).
Scientific Software Center at Heidelberg University: White Paper
Creators: name: Keegan, Liam
name: Kempf, Dominic
name: Ulusoy, Inga
Publisher: name: Zenodo
Year: 2024
Subjects: research software
research software infrastructure

description: The digitalization of the scientific process lead to the emergence of research software as a foundational pillar of modern research. The Scientific Software Center (SSC) at Heidelberg University provides institutional support to researchers of all faculties of Heidelberg University in software development and software engineering best practices. The SSC promotes reproducibility and sustainability of research software, and provides services in research software development for researchers of all disciplines. 

This whitepaper is intended to describe the SSC and its implementation strategy to aid in implementing research software engineering departments and institutional support at German universities and research institutions, as well as provide information to German funding agencies, policy makers and researchers at Heidelberg University.
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title: ÑÑÐµÐ±Ð½Ð¾Ðµ Ð¿Ð¾ÑÐ¾Ð±Ð¸Ðµ
titleType: Subtitle
Creators: name: ÐÐ¸ÑÑÑÐµÐ², ÐÐ½Ð°ÑÐ¾Ð»Ð¸Ð¹
Publisher: name: ÐÐ·Ð´-Ð²Ð¾ ÐÐ¾Ð»Ð¸ÑÐµÑÐ½. ÑÐ½-ÑÐ°
Year: 2017
Subjects: ÐÑÑÐ¸ÑÐ»Ð¸ÑÐµÐ»ÑÐ½ÑÐµ Ð¼Ð°ÑÐ¸Ð½Ñ ÑÐ»ÐµÐºÑÑÐ¾Ð½Ð½ÑÐµ Ð¿ÐµÑÑÐ¾Ð½Ð°Ð»ÑÐ½ÑÐµ
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ÐÐ°ÑÐµÐ¼Ð°ÑÐ¸ÑÐµÑÐºÐ¾Ðµ Ð¿ÑÐ¾Ð³ÑÐ°Ð¼Ð¼Ð¸ÑÐ¾Ð²Ð°Ð½Ð¸Ðµ

description: Ð¡Ð¾Ð¾ÑÐ²ÐµÑÑÑÐ²ÑÐµÑ ÑÐ¾Ð´ÐµÑÐ¶Ð°Ð½Ð¸Ñ ÑÐµÐ´ÐµÑÐ°Ð»ÑÐ½Ð¾Ð¹ Ð´Ð¸ÑÑÐ¸Ð¿Ð»Ð¸Ð½Ñ "Ð¢ÐµÐ¾ÑÐ¸Ñ Ð¸ ÑÐµÑÐ½Ð¾Ð»Ð¾Ð³Ð¸Ñ Ð¿ÑÐ¾Ð³ÑÐ°Ð¼Ð¼Ð¸ÑÐ¾Ð²Ð°Ð½Ð¸Ñ" Ð³Ð¾ÑÑÐ´Ð°ÑÑÑÐ²ÐµÐ½Ð½Ð¾Ð³Ð¾ Ð¾Ð±ÑÐ°Ð·Ð¾Ð²Ð°ÑÐµÐ»ÑÐ½Ð¾Ð³Ð¾ ÑÑÐ°Ð½Ð´Ð°ÑÑÐ° Ð¿Ð¾ Ð½Ð°Ð¿ÑÐ°Ð²Ð»ÐµÐ½Ð¸ÑÐ¼ Ð¿Ð¾Ð´Ð³Ð¾ÑÐ¾Ð²ÐºÐ¸ 27.03.03 "Ð¡Ð¸ÑÑÐµÐ¼Ð½ÑÐ¹ Ð°Ð½Ð°Ð»Ð¸Ð· Ð¸ ÑÐ¿ÑÐ°Ð²Ð»ÐµÐ½Ð¸Ðµ" Ð¸ 09.03.02 "ÐÐ½ÑÐ¾ÑÐ¼Ð°ÑÐ¸Ð¾Ð½Ð½ÑÐµ ÑÐ¸ÑÑÐµÐ¼Ñ Ð¸ ÑÐµÑÐ½Ð¾Ð»Ð¾Ð³Ð¸Ð¸". Ð£ÑÐµÐ±Ð½Ð¾Ðµ Ð¿Ð¾ÑÐ¾Ð±Ð¸Ðµ ÑÐ²Ð»ÑÐµÑÑÑ Ð²Ð²Ð¾Ð´Ð½ÑÐ¼ ÐºÑÑÑÐ¾Ð¼ Ð¿Ð¾ ÑÐ¸ÑÑÐµÐ¼Ðµ MATLAB. Ð¡ÑÑÐ´ÐµÐ½ÑÑ Ð½Ðµ ÑÐ¾Ð»ÑÐºÐ¾ Ð¾Ð·Ð½Ð°ÐºÐ¾Ð¼ÑÑÑÑ Ñ ÑÐµÐ¼, ÐºÐ°Ðº ÑÐ°Ð±Ð¾ÑÐ°ÑÑ Ñ ÑÑÐ¾Ð¹ ÑÐ¸ÑÑÐµÐ¼Ð¾Ð¹ Ð² ÑÐµÐ¶Ð¸Ð¼Ðµ ÐºÐ°Ð»ÑÐºÑÐ»ÑÑÐ¾ÑÐ°, Ð½Ð¾ Ð¸ Ð¸Ð·ÑÑÐ°Ñ Ð¿ÑÐ¾Ð³ÑÐ°Ð¼Ð¼Ð¸ÑÐ¾Ð²Ð°Ð½Ð¸Ðµ Ð² ÑÑÐµÐ´Ðµ MATLAB. ÐÑÐ¾Ð±Ð¾Ðµ Ð²Ð½Ð¸Ð¼Ð°Ð½Ð¸Ðµ ÑÐ´ÐµÐ»ÐµÐ½Ð¾ Ð¿Ð°ÐºÐµÑÑ Simulink - Ð¾Ð´Ð½Ð¾Ð¼Ñ Ð¸Ð· Ð¾ÑÐ½Ð¾Ð²Ð½ÑÑ Ð¿Ð°ÐºÐµÑÐ¾Ð² ÑÐ°ÑÑÐ¸ÑÐµÐ½Ð¸Ñ MATLAB. ÐÑÐµÐ´Ð½Ð°Ð·Ð½Ð°ÑÐµÐ½Ð¾ Ð´Ð»Ñ ÑÑÑÐ´ÐµÐ½ÑÐ¾Ð², Ð¸Ð·ÑÑÐ°ÑÑÐ¸Ñ Ð´Ð¸ÑÑÐ¸Ð¿Ð»Ð¸Ð½Ñ "ÐÑÑÐ¸ÑÐ»Ð¸ÑÐµÐ»ÑÐ½Ð°Ñ Ð¼Ð°ÑÐµÐ¼Ð°ÑÐ¸ÐºÐ°", "Ð¢ÐµÐ¾ÑÐ¸Ñ Ð°Ð²ÑÐ¾Ð¼Ð°ÑÐ¸ÑÐµÑÐºÐ¾Ð³Ð¾ ÑÐ¿ÑÐ°Ð²Ð»ÐµÐ½Ð¸Ñ" Ð¸ Ð´Ñ., Ð° ÑÐ°ÐºÐ¶Ðµ Ð±ÑÐ´ÐµÑ Ð¿Ð¾Ð»ÐµÐ·Ð½Ð¾ Ð¿ÑÐ¸ Ð²ÑÐ¿Ð¾Ð»Ð½ÐµÐ½Ð¸Ð¸ ÐÐÐ Ð¡.
Table S2. ANOVAs on the optimal models, per species, with the addition of an interaction between the smooth term (day of year) and each factor, suggest (via p< 0.05) that the predictions would be improved by applying a smooth term to each level within a factor separately, except for sex in M. erminea. Thus, as the different levels within most factors differ in the shape of their response curve, we find support to consider factor levels separately.
Creators: name: LaPoint, Scott
name: Keicher, Lara
name: Wikelski, Martin
name: Zub, Karol
name: Dechmann, Dina K. N.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 60302 Biogeography and Phylogeography

description: Ontogenetic changes in mammalian skulls are complex. For a very few species (i.e. some Sorex shrews), these also include seasonally driven, bidirectional size changes within individuals, presumably to reduce energy requirements during low resource availabilities. These patterns are poorly understood, but are likely most pronounced in high-metabolic species with limited means for energy conservation. We used generalized additive models to quantify the effect of location, Julian day, age and sex on the length and depth of 512 and 847 skulls of stoat (Mustela erminea) and weasel (M. nivalis) specimens collected throughout the northern hemisphere. Skull length of both species varies between sexes and geographically, with stoat skull length positively correlated with latitude. Both species demonstrate seasonal and ontogenetic patterns, including a rare, absolute growth overshoot in juvenile braincase depth. Standardized braincase depths of both species peak in their first summer, then decrease in their first winter, followed by a remarkable regrowth that peaks again during their second summer. This seasonal pattern varies in magnitude and timing between geographical regions and the sexes, matching predictions of Dehnel's phenomenon. This suggests implications for the evolution of over-wintering strategies in mammals, justifying further research on their mechanisms and value, with implications for applied osteology research.
Fig. S1 Abiotic factors (water temperature, electric conductivity (EC), and precipitation) at each survey station in the Shigo-gawa stream during downstream surveys. Precipitation was observed at Nara Meteorological Observatory. Table S1. Environmental variables (mean ± 1 SD) of each sampling site. The values in parentheses are sample sizes. from Distribution and drift dispersal dynamics of a caddisfly grazer in response to resource abundance and its ontogeny
Creators: name: Katano, Izumi
name: Hiromune Mitsuhashi
name: Doi, Hideyuki
name: Isobe, Yu
name: Oishi, Tadashi
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Stream grazers have a major impact on food web structure and the productivity of stream ecosystems; however, studies on the longitudinal (upstream versus downstream) and temporal changes in their drift dynamics and resulting distributions remain limited. Here, we investigated the longitudinal and temporal distributions and drift propensity of a trichopteran grazer, the caddisfly, Micrasema quadriloba, during its life cycle in a Japanese stream. The distribution of larvae significantly shifted downstream during the fifth instar larval stage during late winter; with periphyton abundance (i.e. their food source) showing similar shifts downstream. Therefore, our results show that the drift dispersal the caddisfly occurs in response to decline in available food resources (i.e. food-resource scarcity) and an increase in food requirements by growing individuals. Furthermore, our results show that this observed longitudinal shift in larval distribution varies through their life cycle, because the drift dispersal of fifth instar larvae was greater than that of immature larvae. The correlation between periphyton abundance and drift propensity of fourth instar larvae was not statistically significant, whereas that of fifth instar larvae was significantly negative. In conclusion, we detected an ontogenetic shift in drift propensity, which might explain the longitudinal and temporal distributions of this species.
More than five files from The ‘dance’ of life: visualizing metamorphosis during pupation in the blow fly Calliphora vicina by X-ray video imaging and micro-computed tomography
Creators: name: Hall, Martin J. R.
name: Simonsen, Thomas J.
name: Martín-Vega, Daniel
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Physiology
subject: FOS: Biological sciences
subject: Developmental Biology
subject: 60801 Animal Behaviour

description: The dramatic metamorphosis from larva to adult of insect orders such as Diptera cannot usually be witnessed because it occurs within an opaque structure. For the cyclorrhaphous dipterans, such as blow flies, this structure is the puparium, formed from the larval cuticle. Here, we reveal metamorphosis within the puparium of a blow fly at higher temporal resolution than previously possible with two-dimensional time-lapse videos created using the X-ray within a micro-computed tomography scanner, imaging development at 1-min and 2-min intervals. Our studies confirm that the most profound morphological changes occur during just 0.5% of the intrapuparial period (approx. equivalent to 1.25 h at 24°C) and demonstrate the significant potential of this technique to complement other methods for the study of developmental changes, such as hormone control and gene expression. We hope this will stimulate a renewed interest among students and researchers in the study of morphology and its astonishing transformation engendered by metamorphosis.
Software
Creators: name: Linzi Wilson-Wilde
name: Searston, Rachel A.
name: Corbett, Brooklyn
name: Thompson, Matthew B
name: Osborn, Scott
name: Hayes, Robert
name: Robson, Samuel G.
name: Edmond, Gary
name: McCarthy, Duncan
name: Raymond, Jennifer
name: Tangen, Jason M
name: Eva, Kevin
name: Byard, Graham
Publisher: name: OSF Registries
Year: 2019

description: This component contains the LiveCode source file (version 9.0.2) for presenting the sequences and materials to participants and collecting their responses. LiveCode’s Community Edition, is a free open source object-oriented, cross-platform, natural language rapid development environment that can be used for programming local (LiveCode) and web-based (HTML5) experiments. LiveCode is based on the Transcript programming language (a high-level xTalk scripting language like HyperCard’s HyperTalk), and is a great stepping stone to learning Javascript and Python. It is fit for developing experiments that require fine-grained control, complex sequencing, and heavy back-end processing. You can download LiveCode for PC, Linux or Mac at: https://downloads.livecode.com/livecode. You can run this experiment on your own computer by installing the appropriate version of LiveCode Community, and downloading the zip file. Note, however, that the “images” file is missing, which you’ll need for the experiment to run properly. As we describe in the Materials component, the fingerprint images we used in this project were sourced from the NIST Special Database 300 (https://www.nist.gov/itl/iad/image-group/nist-special-database-300), which consists of 8871 rolled fingerprints, which were donated to NIST by the Federal Bureau of Investigation. Unfortunately, NIST has not made this special database openly available, and we do not have permission to distribute it further, publish, copy, or disseminate it in any way or form whatsoever, whether for profit or not. If you’d like to access the images we used in this project, contact fingerprint_data@nist.gov to get permission from NIST to use the database (it’s freely available for biometrics related research, development, and education), forward Jason Tangen (uqjtange@uq.edu.au) the automated access email, and he’ll send you a link to the images we used in this project. Once you get the “images” folder, just put it inside the main experiment folder, which can be stored anywhere on your machine. But the file structure within this folder needs to be preserved to run the experiment, as the script is reading in the participant sequences, images, and instructions on the fly from the same location as the source file.
Supplementary docx file contains a collection of possible configurations of mutually touching 7 and 9 cylinders together with their topological characteristics in Appendices 1-4. Appendix 5 gives the text of a Mathcad program that calculates the chirality matrices of different dimensions that do not contain K5. from Symmetry, topology and the maximum number of mutually pairwise-touching infinite cylinders: configuration classification
Creators: name: Pikhitsa, Peter V.
name: Pikhitsa, Stanislaw
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Geometry
subject: 10112 Topology
subject: FOS: Mathematics
subject: 10299 Applied Mathematics not elsewhere classified

description: We provide a complete classification of possible configurations of mutually pairwise touching infinite cylinders in Euclidian three-dimensional space. It turns out that there is a maximum number of such cylinders possible in three-dimensional independently on the shape of the cylinder cross-sections. We give the explanation of the uniqueness of the non-trivial configuration of seven equal mutually touching round infinite cylinders found earlier. Some results obtained for the chirality matrix, which is equivalent to the Seidel adjacency matrix, may be found useful for the theory of graphs.
GGP Technical Guidelines
Creators: name: Gauthier, Anne
name: Emery, Thomas
name: Cabaço, Susana
name: Beaupre, Pascale
name: Jablonski, Wojciech
name: Mynarska, Monika
name: Caporali, Arianna
name: Deimantas, Vytenis
name: Grünwald, Olga
name: Kong, Siyang
name: Koops, Judith C.
name: Rijken, Arieke
name: Schumann, Almut
Publisher: name: Zenodo
Year: 2024

description: These Technical Guidelines aim to provide the fieldwork specifications and requirements for countries that are planning to conduct the Generations and Gender Survey (GGS). The document outlines the responsibilities and timeline regarding the implementation of the GGS at all stages of fieldwork. The document is primarily targeted at national coordinators and research vendors contracted by the national teams.

This new version incorporates updates and revisions, especially regarding the web implementation of the GGS. It is also more condense and aims to provide the general overview of the implementation of the GGS. The document was also prepared with inputs from partners of the Generations and Gender Programme (GGP) and other experts in the field.
Frequency and costs of pulmonary exacerbations in patients with cystic fibrosis in the United States
Creators: name: Rubin, Jaime L.
name: Thayer, Sarah
name: Watkins, Angela
name: Wagener, Jeffrey S.
name: Hodgkins, Paul S.
name: Schechter, Michael S.
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Background: Information is limited regarding the cost of pulmonary exacerbations (PEx) among patients with cystic fibrosis in the United States. Methods: To examine PEx costs, medical chart data were linked to insurance claims for patients aged ≥6 years who had commercial coverage from a large US health insurer affiliated with Optum during 2008–2013. A PEx was categorized as an episode requiring newly started (1) oral antibiotics (PEx-O) or (2) intravenous (IV) antibiotics and/or inpatient stay (PEx-IV). Results: Among 241 patients, 88.0% had ≥1 PEx (2.9/year) of any type, and 48.1% had ≥1 PEx-IV. Prior PEx-IV was the strongest risk factor for subsequent PEx-IV. The mean cost per episode was $12,784 for PEx of any type and $36,319 for PEx-IV. Patients with worse lung function were more likely to experience a PEx and incurred higher annual PEx-related costs. Limitations: This was an observational study using a convenience sample of patients with commercial coverage from a large US health insurer whose medical charts were available for abstraction. Results of the study may not be generalizable to individuals with Medicaid coverage and other types of insurance, or to the uninsured. Conclusions: Most patients experience ≥1 PEx annually, and nearly half require IV antibiotics and/or inpatient stay at considerable cost.
Museums in Lockdown: Digital Transformations in Response to COVID-19
Creators: name: Al-Mannai, Haya Ibrahim A. A.
Publisher: name: Manara - Qatar Research Repository
Year: 2024
Subjects: classificationCode: 44
subject: Human society

description: Many institutions were unable to foresee their sudden closure following the acknowledgment of COVID-19 as a pandemic. Most sectors, including the heritage and museum sector, have had to find alternative, digital methods of continuing their operations during the strict global lockdowns. The move from physical to digital introduced challenges and created new means for service delivery. Although many cultural institutions such as museums and libraries relied on social media to continue their services beyond the physical space, both new and existing online digital services were offered as a response to the strict lockdowns. Some of these initiatives included programs such as online workshops and activities, virtual tours, mobile applications, and games. This research explores how the spread of COVID-19, and the subsequent nationwide lockdowns that were initiated internationally, emphasized the need for innovation in digital technologies and the challenges associated with the sudden transition. This study focuses specifically on museums in Qatar and aims to understand four key components: (1) how the heritage sector in Qatar responded, (2) which types of digital tools, services, and initiatives were used to fill the gap of onsite visits, (3) what types of challenges museums faced during their transition from offline to online, and (4) COVID-19’s influence on the future of digital services in museums. The data presented in this study was collected via interviews conducted with experts representing some of the major cultural institutions in the country. It was found that most institutions in Qatar, as was the case globally, were not prepared for this sudden transition to digital. The most common challenges that institutions faced include copyright issues, website usability, and users’ familiarity with e-services. Some of these challenges were addressed by cultural institutions in Qatar, while others were more difficult to tackle during a global pandemic.
LivingCYP - Supplementary materials 30jan2024.docx
Creators: name: Milosavljević, Filip
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 321406
subject: Pharmacogenomics
subject: FOS: Medical biotechnology

description: The file represents supplementary materials to the protocol for the living systematic review and meta analysis titled: "Living systematic review and meta-analysis of plasma-concentrations of antipsychotic drugs in carriers and non-carriers of variant CYP450 genotypes: Living systematic review protocol"Supplementary materials include: Draft of the search strategy; Detailed definitions of the Control and Exposure groups; PRISMA-P checklist.
Appendix: contains data definitions for the files in the online repository, supplementary tables 1 and 2, supplementary figure 1, and additional references. from Morphology captures diet and locomotor types in rodents
Creators: name: Arregoitia, Luis D. Verde
name: Fisher, Diana O.
name: Schweizer, Manuel
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 60301 Animal Systematics and Taxonomy
subject: 60310 Plant Systematics and Taxonomy

description: To understand the functional meaning of morphological features, we need to relate what we know about morphology and ecology in a meaningful, quantitative framework. Closely related species usually share more phenotypic features than distant ones, but close relatives do not necessarily have the same ecologies. Rodents are the most diverse group of living mammals, with impressive ecomorphological diversification. We used museum collections and ecological literature to gather data on morphology, diet and locomotion for 208 species of rodents from different bioregions to investigate how morphological similarity and phylogenetic relatedness are associated with ecology. After considering differences in body size and shared evolutionary history, we find that unrelated species with similar ecologies can be characterized by a well-defined suite of morphological features. Our results validate the hypothesized ecological relevance of the chosen traits. These cranial, dental and external (e.g. ears) characters predicted diet and locomotion and showed consistent differences among species with different feeding and substrate use strategies. We conclude that when ecological characters do not show strong phylogenetic patterns, we cannot simply assume that close relatives are ecologically similar. Museum specimens are valuable records of species' phenotypes and with the characters proposed here, morphology can reflect functional similarity, an important component of community ecology and macroevolution.
title: The Museum Mineralogia München (SNSB), a geoscientific place of education
Creators: name:  Kaliwoda,   Melanie
name:  Junge ,   Malte
name:  Hentschel ,   Malte
name:  Schmahl ,   Wolfgang W.
Publisher: name: Deutsche Geologische Gesellschaft - Geologische Vereinigung e.V. (DGGV)
Year: 2021

description: The Museum Mineralogia München represents the museum window of the Mineralogical State Collection Munich (SNSB). It shows constantly reprocessed geoscientific topics through diverse special and permanent exhibitions. In addition, there are numerous exhibitions that are particularly well suited to natural science school content. Topics such as volcanism, symmetry, metamorphosis or the chemistry of pigments are worth mentioning here. It is important to us that the projects can be attended by children and young people and cover a wide range of scientific, artistic and creative areas. Thus, the topic of metamorphosis has appealed to students and teachers from the subjects of geology, biology, geography, music and art. In addition to guided tours and projects lasting several hours, our museum also offers project weeks or its own museum work in P and W school seminars as part of the LeLa (Lernort Labor) or Muc-Labs (Münchner Schülerlabore) initiative in Germany. The aim is always to make minerals, crystals, rocks and meteorites " touchable" and “tangible” and to explore them scientifically with the children using simple but also modern methods. The interest in nature should be awakened, because only what you know and appreciate you can protect and love.
Categorizing Agritourism Operations and Identifying Barriers to Success
Creators: name: DeLay, Nathan D.
name: Chouinard, Hayley H.
name: Wandschneider, Philip R.
name: DeLay, Nathan D.
name: Chouinard, Hayley H.
name: Wandschneider, Philip R.
Publisher: name: Unknown
Year: 2019
Subjects: Agribusiness
Farm Management

description: Agritourism comprises heterogeneous firms that cannot be easily categorized. We apply principal components analysis to data in Washington state to uncover latent relationships among agritourism activities. We find most agritourism firms cluster in four groups, labelled: seasonal activities, event providers, farm and ranch tourism providers,and direct sales. A sorting mechanism assigns most firms to these groups. Using ordered logit regressions, we find that clustering and sorting reveal differences in how groups perceive barriers to success. We confirm that most firms are concerned about regulations and zoning laws. However, we find nuances in the concerns over insurance availability, and need for financial assistance and business knowledge
Impact of Alfalfa Exports Surge on Dairy and Feed Markets in California
Creators: name: Tejeda, Hernan A
name: Kim, Man-Keun
name: Feuz, Dillon M.
name: Tejeda, Hernan A
name: Kim, Man-Keun
name: Feuz, Dillon M.
Publisher: name: Unknown
Year: 2019
Subjects: Agribusiness
International Relations/Trade

description: Alfalfa hay exports have surged considerably since 2009, with 95% of shipments being supplied from seven western states. Many of these states are major U.S. dairy and alfalfa hay producers; California is the nation’s largest producer of both commodities. We investigate these alfalfa exports from the year 2000 until present, seeking to determine if the spike in their dynamic evolution has resulted in a structural break, and find significant evidence of this for the year 2009. Just as important, we investigate whether there has been a change in the dynamic long-run relationships between California dairy and alfalfa markets for the periods’ pre- and post-break of alfalfa exports. We identify significant differences among these two periods; specifically, the long-run equilibrium between milk and alfalfa hay prices and its speed of adjustment following a shock to either market. Results have implications for risk management and policy analysis.
Data
Creators: name: Linzi Wilson-Wilde
name: Searston, Rachel A.
name: Corbett, Brooklyn
name: Thompson, Matthew B
name: Osborn, Scott
name: Hayes, Robert
name: Robson, Samuel G.
name: Edmond, Gary
name: McCarthy, Duncan
name: Raymond, Jennifer
name: Byard, Graham
name: Tangen, Jason M
name: Eva, Kevin
Publisher: name: OSF Registries
Year: 2019

description: This component contains the raw individual .txt files outputted and time stamped after completing the experiment.
E.coli Recalls and Meat Demand: An Updated Assessment
Creators: name: Patalee, M.A. Buddhika
name: Tonsor, Glynn T.
name: Patalee, M.A. Buddhika
name: Tonsor, Glynn T.
Publisher: name: Unknown
Year: 2019
Subjects: Agribusiness
Demand and Price Analysis

description: This study examines the impact of E.coli recalls on U.S. meat demand. Quarterly E.coli recalls from 1994-2016 are used to develop E.coli indices specific to beef, pork, and poultry collected by the U.S. Department of Agriculture-Food Safety Inspection Service. The findings of the absolute price version of the Rotterdam model with structural shifters suggest that recalls have no significant impact on meat demand as a whole. This implies consumers are less sensitive to E.coli recalls than previously found.
The Economic Importance of Replacement H2A Foreign Farm Labor Inputs
Creators: name: Williams, Odeidra D.
name: Escalante, Cesar L.
name: Williams, Odeidra D.
name: Escalante, Cesar L.
Publisher: name: Unknown
Year: 2019
Subjects: Agribusiness
Labor and Human Capital

description: This study provides empirical support for the H2A workers‘ importance as replacement for former undocumented farm workers. A county-level instrumental variable estimation identified determinants of the farmers’ H2A labor demand and its relative value in enhancing business growth. Results indicate that growth can be hampered by higher labor dependence as domestic workers have become more expensive, difficult to hire, and less reliable. Moreover, this study confirms the need for H2A replacement workers, yet this demand is tempered by program patronage issues, such as high attendant costs and timing of workers‘ availability, even if such workers provide the required output productivity.
Economic Consequences of Different Institutional Structures for the Cotton Sector in West and Central Africa: Evidence from Burkina Faso
Creators: name: Langa, Vasco
name: Vitale, Jeffrey
name: Vitale, Pilja Park
name: Langa, Vasco
name: Vitale, Jeffrey
name: Vitale, Pilja Park
Publisher: name: Unknown
Year: 2019
Subjects: Agribusiness
Industrial Organization

description: In West and Central Africa, vertical coordination is used by governments to control both input and output markets. This article assesses the potential economic effects of different institutional structures for parastatals using a structural model of smallholder cotton farms in Burkina Faso. A structural system is developed to measure the potential economic outcomes of three market alternatives in terms of a parastatal company (state-owned cotton company) exercising market power. Results demonstrate that, when a parastatal is allowed to exercise market power, it is incentivized to extract rents from the farmers maximizing the parastatal’s economic surplus. The primary beneficiaries of the privatization of the cotton sector are smallholder farmers, a result of the higher prices received in output markets. The parastatal extracts more from the output market than from the input market. With partial privatization, farmers are better off either in output or input markets.
Spatial and Temporal Dynamics of Civil Resistance in War Contexts
Creators: name: Krtsch, Roman
Publisher: name: Universität Osnabrück
Year: 2022
Subjects: subject: Bürgerkriege
subject: Proteste
subject: Ziviler Widerstand
subject: Quantitative Analyse
subject: 320 - Politik

description: Civil wars and intrastate conflicts are characterized by the armed confrontation between the government of a sovereign nation state and at least one non-state group. Accordingly, conflict research has traditionally put an emphasis on analyzing the dynamics of violence between these actors. Recent findings yet suggest that civil war contexts are also increasingly characterized by another type of—mostly nonviolent—behavior: Non-combatants like social movement organizations and local communities, but also armed actors themselves occasionally rely on methods of civil resistance like street protests or general strikes. These behavioral patterns present a fundamental puzzle: Why do rebel groups that normally rely on armed tactics resort to these rather atypical forms of resistance? And how can we explain that civilians even in these highly threatening environments manage to organize collective action in order to articulate their demands? Although a nascent strand of research has examined the occurrence of wartime protests, the influence of conflict-endogenous factors on these phenomena has hitherto been largely neglected. This dissertation aims at addressing this gap and investigates the spatial and temporal dynamics of civil resistance in war contexts. In the course of four research papers, I analyze under which conditions both armed rebel groups and civilian actors use respective tactics. Moreover, I explore how wartime dynamics affect civil resistance both during and in the immediate aftermath of fighting. The results show a strong association between spatial and temporal conflict dynamics on the one hand and the occurrence of civil resistance on the other hand. With the examination of the influence of conflict-endogenous processes, these results contribute to a thriving strand of literature in conflict research that puts an emphasis on the investigation of civil resistance in war contexts.
Design Patterns in Phylogenetics: Practical Tree Data Structures and Objects for Serialization
Creators: name: Vos, Rutger
Publisher: name: figshare
Year: 2017
Subjects: subject: 60102 Bioinformatics
subject: FOS: Computer and information sciences
subject: Computational Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences

description: In this paper I review different ways in which phylogenetic trees can be represented in commonly-used programming languages and data serialization formats.
Two organic–inorganic hybrid compounds constructed from [PMoV1MoVI7VIV2VV4O42]4− and different transition metal fragments
Creators: name: Shi, Shu-Yun
name: Zhu, Tong-Hui
name: Cui, Xiao-Bing
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Marine Biology

description: Two new organic–inorganic hybrid compounds, [Cu(phen)(prz)]2[PMoV1MoVI7VIV2VV4O42]·4H2O (1) and [Ag2(phen)4]2[PMoV1MoVI7VIV2VV4O42] (2) (phen = 1,10-phenanthroline, prz = pyrazine), have been synthesized and characterized by IR, XPS, XRD, UV–vis, fluorescent spectra analyses, elemental analyses, X-ray diffraction analyses, TG analyses, and cyclic voltammetric measurements. Both compounds are formed by Keggin POM cores and transition metal fragments. Compound 1 exhibits an unprecedented 1-D chain structure constructed from [PMoV1MoVI7VIV2VV4O42]4− and [Cu(phen)(prz)]2+ in the –A–B↑–C–B↓– linking mode. Compound 2 shows a supramolecular structure formed by [PMoV1MoVI7VIV2VV4O42]4− and [Ag2(phen)4]2+.
The Science Education Tracker
Creators: name: Greenwood, Ethan
Publisher: name: figshare
Year: 2017
Subjects: Education

description: In 2016, Wellcome commissioned Kantar Public to run the Science Education Tracker, an online random sample survey representing young people (years 10-13) at state schools in England. The survey covers a range of themes such as views about science and other subjects at schools, attainment, practical science, careers aspirations and science outside. Approximately 4000 young people responded, with a response rate of 50%
International cooperation of graduate nursing programs: scope review protocol
Creators: name: Medrado, Graciane Cordeiro Correa
Publisher: name: OSF Registries
Year: 2022
Subjects: Education, Nursing, Graduate
Postgraduate in Nursing
international cooperation
research personnel

description: It is necessary to develop research that addresses international scientific cooperation in Graduate Nursing Programs in Brazil, in addition to exploring how the collaborative network is established in the country, to encourage and discuss improvement strategies that allow the advancement of research and international collaboration networks, consolidating the Graduate Nursing Programs and even enabling the increase of evidence-based practices. Thus, the present study aims to map the evidence on the international cooperation of researchers from Graduate Nursing Programs in the global context.
3rd general meeting and working group meetings of the COST Action 16203: STEM CELLS OF MARINE/AQUATIC INVERTEBRATES: FROM BASIC RESEARCH TO INNOVATIVE APPLICATIONS (MARISTEM), December 3, 2019, METU-Culture and Convention Center (METU-CCC), METU-Ankara, T
Creators: name: Karahan, A
Publisher: name: Invertebrate Survival Journal
Year: 2020

description: Invertebrate Survival Journal, Vol 17 No 1 (2020)