cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 5 of Dipeptide repeat proteins inhibit homology-directed DNA double strand break repair in C9ORF72 ALS/FTD
Creators: name: Andrade, Nadja
name: Ramic, Melina
name: Esanov, Rustam
name: Liu, Wenjun
name: Rybin, Mathew
name: Gaidosh, Gabriel
name: Abdallah, Abbas
name: Del’Olio, Samuel
name: Huff, Tyler
name: Chee, Nancy
name: Anatha, Sadhana
name: Gendron, Tania
name: Wahlestedt, Claes
name: Zhang, Yanbin
name: Benatar, Michael
name: Mueller, Christian
name: Zeier, Zane
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Biochemistry
subject: Physical Sciences not elsewhere classified
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 5 PR overexpression and NPM1 depletion increase levels of the DNA double strand break marker γ-H2AX. A) Western blot analysis of U-2 OS cells co-transfected with the HA-PR plasmid and an NPM1 siRNA at 48 h. B) Western blot analysis of U-2 OS etoposide treated cells with or without NPM1 siRNA. C) Western blot used for A and B quantifications. **P < 0.005, ***P < 0.0005 relative to pcDNA3.1+ control; n = 3 biological replicates, one-way ANOVA followed by Tukey’s post-hoc test; error bars are SEM.
Silpha grossa Linnaeus, 1758, spec. nov.
Creators: name: Linnaeus, Carolus
Publisher: name: Laurentius Salvius
Year: 1758
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Curculionidae
Silpha
Silpha grossa

description: Silpha grossa [spec. nov.]
S. nigra, elytris confertim punctatis: lineis elevatis tribus, thorace emarginato.
Habitat in Europa.
Differt a sequenti, quod ovata nec oblonga; puncta conferta confusa, nec serie longitudinali digesta.
description: Published as part of Linnaeus, Carolus, 1758, Systema Naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Stockholm :Laurentius Salvius on page 361, DOI: 10.5962/bhl.title.542, http://zenodo.org/record/3922206
Additional file 6: of Mode of infant feeding, eating behaviour and anthropometry in infants at 6-months of age born to obese women – a secondary analysis of the UPBEAT trial
Creators: name: Nashita Patel
name: Dalrymple, Kathryn
name: Briley, Annette
name: Dharmintra Pasupathy
name: Seed, Paul
name: Flynn, Angela
name: Poston, Lucilla
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Cell Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: Computational Biology

description: Table S4. Associations between measures of infant appetite including measures of enjoyment of food, food responsiveness and slowness in eating with infant adiposity and anthropometry at 6 months of age, in offspring born to obese women (n = 353). (DOCX 15 kb)
Additional file 7 of Dipeptide repeat proteins inhibit homology-directed DNA double strand break repair in C9ORF72 ALS/FTD
Creators: name: Andrade, Nadja
name: Ramic, Melina
name: Esanov, Rustam
name: Liu, Wenjun
name: Rybin, Mathew
name: Gaidosh, Gabriel
name: Abdallah, Abbas
name: Del’Olio, Samuel
name: Huff, Tyler
name: Chee, Nancy
name: Anatha, Sadhana
name: Gendron, Tania
name: Wahlestedt, Claes
name: Zhang, Yanbin
name: Benatar, Michael
name: Mueller, Christian
name: Zeier, Zane
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Biochemistry
subject: Physical Sciences not elsewhere classified
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Developmental Biology
subject: Mental Health
subject: Plant Biology

description: Additional file 7 Quantification of DNA damage markers in patient derived motor neurons. Western blot analysis of total protein lysates from motor neurons derived from two iPSC lines from unaffected controls (CTL-1, CTL-2) and two lines from C9ALS patients (C9ALS-1, C9ALS-2) resolved by electrophoresis and immunolabeled with antibodies against a marker of DNA damage foci, γH2AX (A), a marker of non-homologous end joining recombination repair, Ku70 (B) or single strand annealing, RAD52 (C). Statistical significance was assessed by one-way ANOVA and post-hoc test between each group; n = 2 biological replicates; error bars are SEM; *p < 0.05, **p < 0.005, ***p < 0.0005, ****p < 0.0001. D) DNA methylation analysis of CpG dinucleotides at the C9ORF72 promoter. Reduced DNA DSB markers for C9ALS-2 neurons is associated with increased CpG methylation at the C9ORF72 promoter.
On the Theory of Quantum Secret Sharing
Creators: name: Gottesman, Daniel
Publisher: name: arXiv
Year: 1999
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: I present a variety of results on the theory of quantum secret sharing. I show that any mixed state quantum secret sharing scheme can be derived by discarding a share from a pure state scheme, and that the size of each share in a quantum secret sharing scheme must be at least as large as the size of the secret. I show that the only constraints on the existence of quantum secret sharing schemes with general access structures are monotonicity (if a set is authorized, so are larger sets) and the no-cloning theorem. I also discuss some aspects of sharing classical secrets using quantum states. In this situation, the size of each share can sometimes be half the size of the classical secret.
description: 9 pages, REVTeX
title: ADCO, Cinquième cartulaire de Saint-Étienne de Dijon (1664), Cart. 28 (G 132), 258 folios, f. 00263
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Cinquième cartulaire de Saint-Étienne de Dijon (1664), Archives départementales de la Côte-d'Or, Cart. 28 (G 132), 258 folios, f. 00263, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cinquième cartulaire de Saint-Étienne de Dijon (1664), Archives départementales de la Côte-d'Or, Cart. 28 (G 132), 258 folios, f. 00263, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
Quantum chaos in quantum Turing machines
Creators: name: Kim, Ilki
name: Mahler, Guenter
Publisher: name: arXiv
Year: 1999
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We investigate a 2-spin quantum Turing architecture, in which discrete local rotations α_m of the Turing head spin alternate with quantum controlled NOT-operations. We demonstrate that a single chaotic parameter input α_m leads to a chaotic dynamics in the entire Hilbert-space.
description: Accepted for publication in Phys. Lett. A, 3 figures
Oscillons in Higher-Derivative Effective Field Theories
Creators: name: Sakstein, Jeremy
name: Trodden, Mark
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We investigate the existence and behavior of oscillons in theories in which higher derivative terms are present in the Lagrangian, such as galileons. Such theories have emerged in a broad range of settings, from higher-dimensional models, to massive gravity, to models for late-time cosmological acceleration. By focusing on the simplest example---massive galileon effective field theories---we demonstrate that higher derivative terms can lead to the existence of completely new oscillons (quasi-breathers). We illustrate our techniques in the artificially simple case of 1 + 1 dimensions, and then present the complete analysis valid in 2 + 1 and 3 + 1 dimensions, exploring precisely how these new solutions are supported entirely by the non-linearities of the quartic galileon. These objects have the novel peculiarity that they are of the differentiability class $C^1$.
description: 22 pages, three figures, updated to match published version
Silpha oblonga Linnaeus, 1758, spec. nov.
Creators: name: Linnaeus, Carolus
Publisher: name: Laurentius Salvius
Year: 1758
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Curculionidae
Silpha
Silpha oblonga

description: Silpha oblonga [spec. nov.]
S. nigra, elytris striis punctatis: lineis elevatis senis, thorace emarginato.
Faun. svec. 381. Cassida atra, elytris striis 10 elevatis, punctis excavatis striatis.
Habitat in Europa.
Differt a praecedenti, quod magis oblonga, minusque emarginata.
description: Published as part of Linnaeus, Carolus, 1758, Systema Naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Stockholm :Laurentius Salvius on page 362, DOI: 10.5962/bhl.title.542, http://zenodo.org/record/3922206
Additional file 6 of Dipeptide repeat proteins inhibit homology-directed DNA double strand break repair in C9ORF72 ALS/FTD
Creators: name: Andrade, Nadja
name: Ramic, Melina
name: Esanov, Rustam
name: Liu, Wenjun
name: Rybin, Mathew
name: Gaidosh, Gabriel
name: Abdallah, Abbas
name: Del’Olio, Samuel
name: Huff, Tyler
name: Chee, Nancy
name: Anatha, Sadhana
name: Gendron, Tania
name: Wahlestedt, Claes
name: Zhang, Yanbin
name: Benatar, Michael
name: Mueller, Christian
name: Zeier, Zane
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Evolutionary Biology
subject: Chemical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Plant Biology
subject: Virology

description: Additional file 6. Validation of DNA damage induction. A) DNA double strand break inducers validated through immunoblotting. B) Super resolution (STORM) microscopy reveals increased γH2AX (red) and phosphorylated RAD52 (green) immunofluorescence and co-localization (yellow) in the nucleus of U-2 OS cells treated with etoposide.
Hydrodynamics of operator spreading and quasiparticle diffusion in interacting integrable systems
Creators: name: Gopalakrishnan, Sarang
name: Huse, David A.
name: Khemani, Vedika
name: Vasseur, Romain
Publisher: name: arXiv
Year: 2018
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: High Energy Physics - Theory (hep-th)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We address the hydrodynamics of operator spreading in interacting integrable lattice models. In these models, operators spread through the ballistic propagation of quasiparticles, with an operator front whose velocity is locally set by the fastest quasiparticle velocity. In interacting integrable systems, this velocity depends on the density of the other quasiparticles, so equilibrium density fluctuations cause the front to follow a biased random walk, and therefore to broaden diffusively. Ballistic front propagation and diffusive front broadening are also generically present in non-integrable systems in one dimension; thus, although the mechanisms for operator spreading are distinct in the two cases, these coarse grained measures of the operator front do not distinguish between the two cases. We present an expression for the front-broadening rate; we explicitly derive this for a particular integrable model (the "Floquet-Fredrickson-Andersen" model), and argue on kinetic grounds that it should apply generally. Our results elucidate the microscopic mechanism for diffusive corrections to ballistic transport in interacting integrable models.
description: Published version
title: Технология возведения зданий и сооружений
title: Учебное пособие
titleType: Subtitle
Creators: name: Плешивцев А.А.
Publisher: name: Ай Пи Ар Медиа
Year: 2020

description: В учебном пособии рассмотрены принципы, приемы, средства строительного проектирования гражданских и промышленных зданий и сооружений, даны характеристики их конструктивных элементов. Издание содержит большое количество иллюстраций архитектурно-конструктивных решений, чертежи узлов, схемы, таблицы, разработанные ведущими проектными институтами и отдельными иностранными фирмами. Подготовлено в соответствии с требованиями Федерального государственного образовательного стандарта высшего образования, предъявляемыми к изучению дисциплины «Технология возведения зданий и сооружений». Предназначено для студентов, обучающихся по направлению подготовки 08.03.01 «Строительство», профиль «Промышленное и гражданское строительство».
VAMP associated proteins are required for autophagic and lysosomal degradation by promoting a PtdIns4P-mediated endosomal pathway
Creators: name: Mao, Dongxue
name: Lin, Guang
name: Tepe, Burak
name: Zuo, Zhongyuan
name: Li Tan, Kai
name: Senturk, Mumine
name: Zhang, Sheng
name: Arenkiel, Benjamin R
name: Sardiello, Marco
name: J. Bellen, Hugo
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Cancer
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences

description: Mutations in the ER-associated VAPB/ALS8 protein cause amyotrophic lateral sclerosis and spinal muscular atrophy. Previous studies have argued that ER stress may underlie the demise of neurons. We find that loss of VAP proteins (VAPs) leads to an accumulation of aberrant lysosomes and impairs lysosomal degradation. VAPs mediate ER to Golgi tethering and their loss may affect phosphatidylinositol-4-phosphate (PtdIns4P) transfer between these organelles. We found that loss of VAPs elevates PtdIns4P levels in the Golgi, leading to an expansion of the endosomal pool derived from the Golgi. Fusion of these endosomes with lysosomes leads to an increase in lysosomes with aberrant acidity, contents, and shape. Importantly, reducing PtdIns4P levels with a PtdIns4-kinase (PtdIns4K) inhibitor, or removing a single copy of Rab7, suppress macroautophagic/autophagic degradation defects as well as behavioral defects observed in Drosophila Vap33 mutant larvae. We propose that a failure to tether the ER to the Golgi when VAPs are lost leads to an increase in Golgi PtdIns4P levels, and an expansion of endosomes resulting in an accumulation of dysfunctional lysosomes and a failure in proper autophagic lysosomal degradation.
Kinks Dynamics in One-Dimensional Coupled Map Lattices
Creators: name: Fernandez, B.
Publisher: name: arXiv
Year: 1994
Subjects: subject: Chaotic Dynamics (nlin.CD)
subject: FOS: Physical sciences

description: We examine the problem of the dynamics of interfaces in a one-dimensional space-time discrete dynamical system. Two different regimes are studied : the non-propagating and the propagating one. In the first case, after proving the existence of such solutions, we show how they can be described using Taylor expansions. The second situation deals with the assumption of a travelling wave to follow the kink propagation. Then a comparison with the corresponding continuous model is proposed. We find that these methods are useful in simple dynamical situations but their application to complex dynamical behaviour is not yet understood.
description: 17pages, LaTex,3 fig available on cpt.univ-mrs.fr directory pub/preprints/94/dynamical-systems/94-P.3079
Additional file 1: of Mutational analysis of selected high-grade malignancies in a premenopausal gynecologic cancer population: a potential for targeted therapies?
Creators: name: Pinckney, Lauren
name: Collins, Justin
name: Schammel, Christine
name: Gevaert, Matt
name: Schammel, David
name: W. Edenfield
name: Jeffrey Elder
name: Puls, Larry
Publisher: name: figshare
Year: 2018
Subjects: subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: Hematology

description: Table S1. Ampliseq Comprehensive Cancer Panel. (DOCX 140Â kb)
Additional file 7 of Genome-wide analysis of MYB transcription factors of Vaccinium corymbosum and their positive responses to drought stress
Creators: name: Wang, Aibin
name: Liang, Kehao
name: Yang, Shiwen
name: Cao, Yibo
name: Wang, Lei
name: Zhang, Ming
name: Zhou, Jing
name: Zhang, Lingyun
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 7: Fig. S3. Functional annotation of DEGs on the basis of gene ontology.
Cladonia dactylota Tuck. 1859
Creators: name: Yánez-Ayabaca, A.
name: Ahti, T.
name: Bungartz, F.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Fungi
Ascomycota
Lecanoromycetes
Lecanorales
Cladoniaceae
Cladonia
Cladonia dactylota

description: Cladonia dactylota Tuck. (1859: 201) (Fig. 4c–d) Primary thallus persistent, of abundant, usually ± erect and rather thick squamules, typically densely cottony sorediate on their lower surface, epruinose; podetia common, greenish gray, sometimes with dark brown necrotic parts, often elongated, 0.8–1.5 (–2.5) cm tall, unbranched to slightly branched; axils closed; tips commonly with narrow and irregular scyphi that sometimes present small marginal proliferations, rarely ascyphose and then acute; surface completely corticate and densely sorediate, soredia farinose, developing into distinctly delimited tuberculose soralia, generally forming bellow the scyphi, less commonly also along the podetial stalk; macrosquamules absents from the podetia, restricted to the basal squamules of the primary thallus; pycnidia with hyaline jelly, apothecia with brown jelly. Spot tests and chemistry: P+ golden yellow, K-, C-, KC-, UV-; psoromic acid and traces of 2'- O - demethylpsoromic and fumarprotocetraric acid. Distribution and ecology: New to Galapagos; reported here from Isabela, Pinta, San Cristóbal, Santa Cruz, and Santiago Island; a common species in the humid zone, sometimes also found in the transition zone; on soil or rock and often among plant debris. Notes: The species can easily be recognized by its tuberculose soralia with abundantly farinose soredia in combination with a very characteristic P+ golden yellow spot test reaction caused by psoromic acid. The primary thallus of the species is also very distinct with its stout, ± erect squamules that have a cottony sorediate lower surface. The species can thus even be identified if its podetia are missing. Sepected specimens examined: ECUADOR. GALAPAGOS: Isabela Island, Volcán Alcedo, on crater rim NW of hut at highest point, 0°25'51"S, 91°5'16"W, 1190 m, humid zone, on soil, 5 May 2006, Aptroot, A. 64830 (CDS 31405). Pinta Island, on top of the highest point of the island, 0°35'3"N, 90°45'12"W, 625 m, humid zone, on rock and plant debris, 26 Feb 2007, Bungartz, F. 5748 (CDS 33402). San Cristóbal Island, NE-slope of Cerro San Joaquín, shortly below the summit, 0°53'50.79"S, 89°30'49.7"W, 693 m, humid zone, on bryophytes, 24 Aug 2008, Bungartz, F. 8587 (CDS 41233). Santa Cruz Island, near Puntudo, 0°38'41"S, 90°20'13"W, 750 m, humid zone, on soil, 27 May 2005, Aptroot, A. 63169, 63202 (CDS 29900, 29933). Santiago Island, Coscojo, 0°13'12"S, 90°45'45"W, 725 m, transition zone, on soil, 24 Mar 2006, Aptroot, A. 65567 (CDS 32155).
description: Published as part of Yánez-Ayabaca, A., Ahti, T. & Bungartz, F., 2013, The Family Cladoniaceae (Lecanorales) in the Galapagos Islands, pp. 1-33 in Phytotaxa 129 (1) on pages 16-17, DOI: 10.11646/phytotaxa.129.1.1, http://zenodo.org/record/5085561
Siegel Paramodular Forms and Sparseness in AdS$_3$/CFT$_2$
Creators: name: Belin, Alexandre
name: Castro, Alejandra
name: Gomes, Joao
name: Keller, Christoph A.
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: We discuss the application of Siegel paramodular forms to the counting of polar states in symmetric product orbifold CFTs. We present five special examples and provide exact analytic counting formulas for their polar states. The first example reproduces the known result for type IIB supergravity on AdS$_3\times S^3\times K3$, whereas the other four examples give new counting formulas. Their crucial feature is that the low energy spectrum is very sparse, which suggests the existence of a suitable dual supergravity theory. These examples open a path to novel realizations of AdS$_3$/CFT$_2$.
description: 50 pages + appendices, 4 figures; v2 typos fixed; v3 minor typos fixed
The imprint of the thick stellar disc in the mid-plane of three early-type edge-on galaxies in the Fornax cluster
Creators: name: Katkov, Ivan Yu.
name: Kniazev, Alexei Yu.
name: Kasparova, Anastasia V.
name: Sil'chenko, Olga K.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Galactic stellar discs, such as that of the Milky Way, have usually a complex structure consisting of a thin and a thick component. The study of galactic disc substructures and their differences can shed light on the galaxy assembling processes and their evolution. However, due to observational difficulties there is a lack of information about the stellar populations of the thick disc components in external galaxies. Here we investigate three edge-on early-type disc galaxies in the Fornax cluster IC335, NGC1380A, NGC1381 by using publicly available photometrical data and our new deep long-slit spectroscopy along galactic mid-planes obtained with the 10-m SALT telescope. We report that significant changes of the stellar population properties beyond the radius where photometrical profiles demonstrate a knee are caused by an increasing thick disc contribution. Stellar population properties in the outermost thick-disc dominated regions demonstrate remarkably old ages and a low metallicity. We interpret these findings as a consequence of star formation quenching in the outermost regions of the discs due to ram pressure gas stripping from the disc periphery at the beginning of the cluster assembly while subsequent star formation occurring in the inner discs being gradually extinguished by starvation.
description: 12 pages, 7 figures; Accepted for publication in MNRAS
Additional file 1 of Dipeptide repeat proteins inhibit homology-directed DNA double strand break repair in C9ORF72 ALS/FTD
Creators: name: Andrade, Nadja
name: Ramic, Melina
name: Esanov, Rustam
name: Liu, Wenjun
name: Rybin, Mathew
name: Gaidosh, Gabriel
name: Abdallah, Abbas
name: Delâ€™Olio, Samuel
name: Huff, Tyler
name: Chee, Nancy
name: Anatha, Sadhana
name: Gendron, Tania
name: Wahlestedt, Claes
name: Zhang, Yanbin
name: Benatar, Michael
name: Mueller, Christian
name: Zeier, Zane
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Biochemistry
subject: Physical Sciences not elsewhere classified
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Additional file 1. Antibody applications and dilutions.
Additional file 8 of Dipeptide repeat proteins inhibit homology-directed DNA double strand break repair in C9ORF72 ALS/FTD
Creators: name: Andrade, Nadja
name: Ramic, Melina
name: Esanov, Rustam
name: Liu, Wenjun
name: Rybin, Mathew
name: Gaidosh, Gabriel
name: Abdallah, Abbas
name: Del’Olio, Samuel
name: Huff, Tyler
name: Chee, Nancy
name: Anatha, Sadhana
name: Gendron, Tania
name: Wahlestedt, Claes
name: Zhang, Yanbin
name: Benatar, Michael
name: Mueller, Christian
name: Zeier, Zane
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Biotechnology
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 8. Genome editing eliminates the C9ORF72 hexanucleotide repeat expansion. A) Schematic of editing strategy: adeno-associated viral (AAV) transduction of iPSCs derived from a C9ALS/FTD patient, titration, clonal selection and isolation of genomic DNA for downstream analysis. Location of guide RNAs and PCR primers spanning the HRE. Expected amplicon sizes for the wild type (WT), expanded and edited alleles are indicated. Electrophoresis of PCR amplicons from three iPSC clones C9ALS-1.4 (HRE+/wt-), C9ALS-1.8 (HRE+/wt+), C9ALS-1.11 (HRE−/wt-) using C9 flanking primers (top) or template input control primers (bottom). Sanger sequencing of PCR amplicons from clone C9ALS-1.11 (HRE−/wt-) confirms loss of sequence homology to the reference genome between gRNAs. Schematic of repeat primed PCR amplification of the HRE. Fragment analysis of amplicons for three clones confirms the loss of the HRE in clone C9ALS-1.11. B) Electropherogram output from fragment analysis indicating intensity (Y-axis) and size (X-axis) of amplicons produced by C9ORF72 repeat-primed PCR. Source of template genomic DNA corresponding to each iPSC cell line used in the study is indicated in upper-right corner. Prototypical saw-tooth pattern is evident in three patient derived cell lines with the hexanucleotide expansion (C9ALS-1, C9ALS-4, C9ALS-5) and lack of PCR products in gnomically edited cell lines (iso). analysis of amplicons for all 6 cell lines clones the loss of the HRE in all isogenic clones. C) Representative images of motor neurons from six iPSC lines stained for DAPI (blue) and immunolabeled with antibodies against Tuj1 (green) and PR (red).
Silpha aquatica Linnaeus, 1758, spec. nov.
Creators: name: Linnaeus, Carolus
Publisher: name: Laurentius Salvius
Year: 1758
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Curculionidae
Silpha
Silpha aquatica

description: Silpha aquatica [spec. nov.]
S. cinerea, elytris substriatis, thorace emarginato longitudinaliter rugoso virescente.
Habitat in Europae aquis, Bupresti similis, sed parva.
description: Published as part of Linnaeus, Carolus, 1758, Systema Naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Stockholm :Laurentius Salvius on page 362, DOI: 10.5962/bhl.title.542, http://zenodo.org/record/3922206
Squashing the Boundary of Supersymmetric AdS$_5$ Black Holes
Creators: name: Cassani, Davide
name: Papini, Lorenzo
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We construct new supersymmetric black holes in five-dimensional supergravity with an arbitrary number of vector multiplets and Fayet-Iliopoulos gauging. These are asymptotically locally AdS$_5$ and the conformal boundary comprises a squashed three-sphere with $\text{SU}(2)\times \text{U}(1)$ symmetry. The solution depends on two parameters, of which one determines the angular momentum and the Page electric charges, while the other controls the squashing at the boundary. The latter is arbitrary, however in the flow towards the horizon it is attracted to a value that only depends on the other parameter of the solution. The entropy is reproduced by a simple formula involving the angular momentum and the Page charges, rather than the holographic charges. Choosing the appropriate five-dimensional framework, the solution can be uplifted to type IIB supergravity on $S^5$ and should thus be dual to $\mathcal{N}=4$ super Yang-Mills on a rotating, squashed Einstein universe.
description: 55 pages, 7 figures; v3: minor changes, references added; version published in JHEP
Additional file 5: of Mode of infant feeding, eating behaviour and anthropometry in infants at 6-months of age born to obese women – a secondary analysis of the UPBEAT trial
Creators: name: Nashita Patel
name: Dalrymple, Kathryn
name: Briley, Annette
name: Dharmintra Pasupathy
name: Seed, Paul
name: Flynn, Angela
name: Poston, Lucilla
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Cell Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Computational Biology

description: Figure S2. Associations between measures of general appetite with infant obesity and growth at 6 months of age, in offspring born to obese women (n = 353). (DOCX 22 kb)
Silpha colon Linnaeus, 1758, spec. nov.
Creators: name: Linnaeus, Carolus
Publisher: name: Laurentius Salvius
Year: 1758
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Curculionidae
Silpha
Silpha colon

description: Silpha colon [spec. nov.]
S. nigra, elytris ferrugineo variis, thorace emarginato: tergo duplici puncto impresso.
Habitat in Europa.
description: Published as part of Linnaeus, Carolus, 1758, Systema Naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Stockholm :Laurentius Salvius on page 362, DOI: 10.5962/bhl.title.542, http://zenodo.org/record/3922206
Controlled quantum evolutions and transitions
Creators: name: Petroni, N. Cufaro
name: De Martino, S.
name: De Siena, S.
name: Illuminati, F.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We study the nonstationary solutions of Fokker-Planck equations associated to either stationary or nonstationary quantum states. In particular we discuss the stationary states of quantum systems with singular velocity fields. We introduce a technique that allows to realize arbitrary evolutions ruled by these equations, to account for controlled quantum transitions. The method is illustrated by presenting the detailed treatment of the transition probabilities and of the controlling time-dependent potentials associated to the transitions between the stationary, the coherent, and the squeezed states of the harmonic oscillator. Possible extensions to anharmonic systems and mixed states are briefly discussed and assessed.
description: 24 pages, 4 figures
The Breakdown of Dynamic Scaling and Intermittency in a Cascade Model of Turbulence
Creators: name: Gat, Omri
name: Procaccia, Itamar
name: Zeitak, Reuven
Publisher: name: arXiv
Year: 1994
Subjects: subject: Chaotic Dynamics (nlin.CD)
subject: FOS: Physical sciences

description: We present an analytic and numerical analysis of the Gledzer-Ohkitani-Yamada (GOY) cascade model for turbulence. We concentrate on the dynamic correlations, and demonstrate both numerically and analytically, using resummed perturbation theory, that the correlations do not follow a dynamic scaling ansatz. The basic reason for this is the existence of a second quadratic invariant, in addition to energy. This implies the breakdown of the Kolmogorov type scaling law, in a manner different from the conventional mechanisms proposed for Navier-Stokes intermittency. By modifying the model equation so as to eliminate the spurious invariant, we recover to good accuracy, both dynamic scaling and the Kolmogorov exponents. We conclude that intermittency in the GOY model may be attributed to the effects of the spurious invariant which does not exist in the 3-dimensional Navier-Stokes flow.
description: 15 pages, 2 figures (included), 1 table, (Paper unchanged, but page count is corrected)
Additional file 9 of HebbPlot: an intelligent tool for learning and visualizing chromatin mark signatures
Creators: name: Girgis, Hani
name: Velasco, Alfredo
name: Reyes, Zachary
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Cell Biology
subject: Molecular Biology
subject: Neuroscience
subject: Developmental Biology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Plant Biology
subject: FOS: Biological sciences

description: Figure S1. HebbPlots of enhancers specific to H1 cell line. These plots were generated from enhancers with different sizes. Each HebbPlot was generated from a set of enhancers, all of which have the same size and are centered on the P300 peaks. (PDF 4881 kb)
WKB and MAF Quantization Rules for Spatially Confined Quantum Mechanical Systems
Creators: name: Sinha, A.
name: Roychoudhury, R.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: A formalism is developed to obtain the energy eigenvalues of spatially confined quantum mechanical systems in the framework of The usual WKB and MAF methods. The technique is applied to three different cases,viz one dimensional Harmonic Oscillators,Quartic Oscillators and a boxed-in charged particle in electric field.
Dynamical Ensembles in Nonequilibrium Statistical Mechanics
Creators: name: Gallavotti, G.
name: Cohen, E. G. D.
Publisher: name: arXiv
Year: 1994
Subjects: subject: Chaotic Dynamics (nlin.CD)
subject: FOS: Physical sciences

description: Ruelle's principle for turbulence leading to what is usually called the Sinai-Ruelle-Bowen distribution (SRB) is applied to the statistical mechanics of many particle systems in nonequilibrium stationary states. A specific prediction, obtained without the need to construct explicitly the SRB itself, is shown to be in agreement with a recent computer experiment on a strongly sheared fluid. This presents the first test of the principle on a many particle system far from equilibrium. A possible application to fluid mechanics is also discussed.
description: Postscript, 12 pages, 132K, 1 uncompressed file Keywords: chaos, nonequilibrium ensembles, Markov partitions, Ruelle principle, Lyapunov exponents, gas
Entanglement Between Bose-Einstein Condensates
Creators: name: Shi, Yu
Publisher: name: arXiv
Year: 1999
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: For a Bose condensate in a double-well potential or with two Josephson-coupled internal states, the condensate wavefunction is a superposition. Here we consider coupling two such Bose condensates, and suggest the existence of a joint condensate wavefunction, which is in general a superposition of all products of the bases condensate wavefunctions of the two condensates. The corresponding many-body state is a product of such superposed wavefunctions, with appropriate symmetrization. These states may be potentially useful for quantum computation. There may be robustness and stability due to macroscopic occupation of a same single particle state. The nonlinearity of the condensate wavefunction due to particle-particle interaction may be utilized to realize nonlinear quantum computation, which was suggested to be capable of solving NP-complete problems.
description: 18 pages. Eq. (73) is changed
Silpha depressa Linnaeus, 1758, spec. nov.
Creators: name: Linnaeus, Carolus
Publisher: name: Laurentius Salvius
Year: 1758
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Curculionidae
Silpha
Silpha depressa

description: Silpha depressa [spec. nov.]
S. ferruginea, elytris laevibus, thorace emarginato.
Habitat in Europa.
description: Published as part of Linnaeus, Carolus, 1758, Systema Naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Stockholm :Laurentius Salvius on page 362, DOI: 10.5962/bhl.title.542, http://zenodo.org/record/3922206
Additional file 4: of Mode of infant feeding, eating behaviour and anthropometry in infants at 6-months of age born to obese women â a secondary analysis of the UPBEAT trial
Creators: name: Nashita Patel
name: Dalrymple, Kathryn
name: Briley, Annette
name: Dharmintra Pasupathy
name: Seed, Paul
name: Flynn, Angela
name: Poston, Lucilla
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Cell Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Figure S1. Distributional assessment of infant anthropometric measurements at 6Â months of age by stratified by offspring sex. (DOCX 33 kb)
An All-Sky Search For R Coronae Borealis Stars in ASAS-SN
Creators: name: Shields, J. V.
name: Jayasinghe, T.
name: Stanek, K. Z.
name: Kochanek, C. S.
name: Shappee, B. J.
name: Holoien, T. W. -S.
name: Thompson, Todd A.
name: Prieto, J. L.
name: Dong, Subo
Publisher: name: arXiv
Year: 2018
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We report the discovery of 19 new R Coronae Borealis (RCB) star and DY Per candidates with light curves from the All-Sky Automated Survey for Supernovae (ASAS-SN). We examined both an existing set of 1602 near/mid-IR selected candidates and an additional 2615 candidates selected to have near/mid-IR SEDs consistent with those of known R Coronae Borealis stars. We visually inspected the light curves for the characteristic variability of these systems.
description: 9 pages, 7 figures, 3 tables. Accepted to MNRAS. Replaced with updated manuscript
Topics in chaotic dynamics
Creators: name: Gallavotti, G.
Publisher: name: arXiv
Year: 1994
Subjects: subject: Chaotic Dynamics (nlin.CD)
subject: FOS: Physical sciences

description: Various kinematical quantities associated with the statistical properties of dynamical systems are examined: statistics of the motion, dynamical bases and Lyapunov exponents. Markov partitons for chaotic systems, without any attempt at describing ``optimal results''. The Ruelle principle is illustrated via its relation with the theory of gases. An example of an application predicts the results of an experiment along the lines of Evans, Cohen, Morriss' work on viscosity fluctuations. A sequence of mathematically oriented problems discusses the details of the main abstract ergodic theorems guiding to a proof of Oseledec's theorem for the Lyapunov exponents and products of random matrices
description: Plain TeX; compile twice; 30 pages; 140K Keywords: chaos, nonequilibrium ensembles, Markov partitions, Ruelle principle, Lyapunov exponents, random matrices, gaussian thermostats, ergodic theory, billiards, conductivity, gas.}
Cladonia scholanderi Abbayes 1949
Creators: name: Yánez-Ayabaca, A.
name: Ahti, T.
name: Bungartz, F.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Fungi
Ascomycota
Lecanoromycetes
Lecanorales
Cladoniaceae
Cladonia
Cladonia scholanderi

description: Cladonia scholanderi Abbayes (1949: 92) (Fig. 6b) Primary thallus subpersistent, of small, narrow squamules, esorediate, epruinose; podetia common, conspicuously yellowish green to pale yellow green, elongate, slender, 3–10 (–14.5) cm tall; unbranched to sparsely branched from the rim of narrow, open funnels; axils perforate; tips of funnel proliferations subulate; surface verrucose-arachnoid, densely granulose, but occasionally with schizidia and microsquamules; farinose soredia rare; pycnidia hyaline; apothecia not seen. Spot tests and chemistry: P+ yellow; K+ yellow, C−, KC−, UV−; thamnolic and usnic acids. Distribution and ecology: Known only from Isabela and Santa Cruz Island; known only from the humid zone, typically in fern-sedge grassland, often also part of reindeer heaths. Notes: Cladonia scholanderi is easily recognized by its long, slender, elongate, conspicuously yellowish green podetia. It is also the only Galapagos species with "bottomless" cups, i.e., cups that are not scyphose but are open funnels. Selected specimens examined: ECUADOR. GALAPAGOS: Isabela Island, Volcán Alcedo, outer Eexposed slope just below the crater rim, 0°25'17"S, 91°5'8"W, 1077 m, humid zone, basalt outcrops, on rock, 8 Mar 2006, Aptroot, A. 65172 (CDS 31756). Volcán Sierra Negra, South side of Sierra Negra crater, trail to Alemania, 0°51'17.60"S, 91°8'55.2"W, 924 m, humid zone, on soil/rocks, 16 Aug 2008, Clerc, P. 08-237, 08- 193, 08-196 (CDS 40091, 40047, 40050), Herrera - Campos, M.A. 10707, 10704 (CDS 40445, 40442), Truong, C. 1251 (CDS 39562), Bungartz, F. 8346, 8347 (CDS 40992, 40993). Santa Cruz Island, 700 m, 1976, Weber & Lanier L-63343 (COLO, H), eastern slope below the summit of El Puntudo, 0°38'42"S, 90°20'14"W, 780 m, humid zone, on soil, 28 Feb 2006, Aptroot, A. 64673 (CDS 31247), saddle between Mount Crocker and El Puntudo, 700 m, humid zone, on rock, 18 Apr 1976, Weber, W.A. (COLO 297078).
description: Published as part of Yánez-Ayabaca, A., Ahti, T. & Bungartz, F., 2013, The Family Cladoniaceae (Lecanorales) in the Galapagos Islands, pp. 1-33 in Phytotaxa 129 (1) on page 25, DOI: 10.11646/phytotaxa.129.1.1, http://zenodo.org/record/5085561
description: {"references": ["des Abbayes, H. (1949) Some new Cladoniae (lichens) from Panama. Bryologist 52 (2): 92 - 96."]}
Quantum phase estimation of multiple eigenvalues for small-scale (noisy) experiments
Creators: name: O'Brien, T. E.
name: Tarasinski, B.
name: Terhal, B. M.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Quantum phase estimation is the workhorse behind any quantum algorithm and a promising method for determining ground state energies of strongly correlated quantum systems. Low-cost quantum phase estimation techniques make use of circuits which only use a single ancilla qubit, requiring classical post-processing to extract eigenvalue details of the system. We investigate choices for phase estimation for a unitary matrix with low-depth noise-free or noisy circuits, varying both the phase estimation circuits themselves as well as the classical post-processing to determine the eigenvalue phases. We work in the scenario when the input state is not an eigenstate of the unitary matrix. We develop a new post-processing technique to extract eigenvalues from phase estimation data based on a classical time-series (or frequency) analysis and contrast this to an analysis via Bayesian methods. We calculate the variance in estimating single eigenvalues via the time-series analysis analytically, finding that it scales to first order in the number of experiments performed, and to first or second order (depending on the experiment design) in the circuit depth. Numerical simulations confirm this scaling for both estimators. We attempt to compensate for the noise with both classical post-processing techniques, finding good results in the presence of depolarizing noise, but smaller improvements in $9$-qubit circuit-level simulations of superconducting qubits aimed at resolving the electronic ground-state of a $H_4$-molecule.
description: 29 pages (1 column, 12pt), 13 page appendix, 11 figures. New version contains explicit demonstration of convergence for multiple eigenvalues in the absence of noise, some comparison between different measures of estimator performance, and more references
Implementation of a three-quantum-bit search algorithm
Creators: name: Vandersypen, Lieven M. K.
name: Steffen, Matthias
name: Sherwood, Mark H.
name: Yannoni, Costantino S.
name: Breyta, Gregory
name: Chuang, Isaac L.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We report the experimental implementation of Grover's quantum search algorithm on a quantum computer with three quantum bits. The computer consists of molecules of $^{13}$C-labeled CHFBr$_2$, in which the three weakly coupled spin-1/2 nuclei behave as the bits and are initialized, manipulated, and read out using magnetic resonance techniques. This quantum computation is made possible by the introduction of two techniques which significantly reduce the complexity of the experiment and by the surprising degree of cancellation of systematic errors which have previously limited the total possible number of quantum gates.
description: Published in Applied Physics Letters, vol. 76, no. 5, 31 January 2000, p.646-648, after minor revisions. (revtex, mypsfig2.sty, 3 figures)
On the boundary and intersection motives of genus 2 Hilbert-Siegel varieties
Creators: name: Cavicchi, Mattia
Publisher: name: arXiv
Year: 2018
Subjects: subject: Algebraic Geometry (math.AG)
subject: FOS: Mathematics
subject: 14G35, 11F32, 11F46, 14C25, 14F20, 14F25, 14F30

description: We study genus 2 Hilbert-Siegel varieties, i.e. Shimura varieties $S_K$ corresponding to the group $\mbox{GSp}_{4,F}$ over a totally real field $F$, along with the relative Chow motives $^λ\mathcal{V}$ of abelian type over $S_K$ obtained from irreducible representations $V_λ$ of $\mbox{GSp}_{4,F}$. We analyse the weight filtration on the degeneration of such motives at the boundary of the Baily-Borel compactification and we find a criterion on the highest weight $λ$ which characterises the absence of the middle weights 0 and 1 in the corresponding degeneration. Thanks to Wildeshaus' theory, the absence of these weights allows us to construct Hecke-equivariant Chow motives over $\mathbb{Q}$, whose realizations equal interior (or intersection) cohomology of $S_K$ with $V_λ$-coefficients. We give applications to the construction of motives associated to automorphic representations.
description: 39 pages; comments very welcome! (v2): some typos fixed, minor changes in the text (v3): other typos fixed, some prerequisites shortened (now 36 pages), minor changes in the text (v4) final version, accepted for publication in Documenta Mathematica (40 pages)
Silpha grisea Linnaeus, 1758, spec. nov.
Creators: name: Linnaeus, Carolus
Publisher: name: Laurentius Salvius
Year: 1758
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Curculionidae
Silpha
Silpha grisea

description: Silpha grisea [spec. nov.]
S. grisea, elytris laevibus, thorace emarginato.
Habitat in Europa.
description: Published as part of Linnaeus, Carolus, 1758, Systema Naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Stockholm :Laurentius Salvius on page 362, DOI: 10.5962/bhl.title.542, http://zenodo.org/record/3922206
Origin of Crack Tip Instabilities
Creators: name: Marder, Michael
name: Gross, Steve
Publisher: name: arXiv
Year: 1994
Subjects: subject: Chaotic Dynamics (nlin.CD)
subject: FOS: Physical sciences

description: This paper demonstrates that rapid fracture of ideal brittle lattices naturally involves phenomena long seen in experiment, but which have been hard to understand from a continuum point of view. These idealized models do not mimic realistic microstructure, but can be solved exactly and understood completely. First it is shown that constant velocity crack solutions do not exist at all for a range of velocities starting at zero and ranging up to about one quarter of the shear wave speed. Next it is shown that above this speed cracks are by and large linearly stable, but that at sufficiently high velocity they become unstable with respect to a nonlinear micro-cracking instability. The way this instability works itself out is related to the scenario known as intermittency, and the basic time scale which governs it is the inverse of the amount of dissipation in the model. Finally, we compare the theoretical framework with some new experiments in Plexiglas, and show that all qualitative features of the theory are mirrored in our experimental results.
description: About fifty pages with lots of PostScript figures