cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Thermometry of a deeply degenerate Fermi gas with a Bose-Einstein condensate
Creators: name: Lous, Rianne S.
name: Fritsche, Isabella
name: Jag, Michael
name: Huang, Bo
name: Grimm, Rudolf
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: FOS: Physical sciences

description: We measure the temperature of a deeply degenerate Fermi gas, by using a weakly interacting sample of heavier bosonic atoms as a probe. This thermometry method relies on the thermalization between the two species and on the determination of the condensate fraction of the bosons. In our experimental implementation, a small sample of 41K atoms serves as the thermometer for a 6Li Fermi sea. We investigate the evaporative cooling of a 6Li spin mixture in a single-beam optical dipole trap and observe how the condensate fraction of the thermometry atoms depends on the final trap depth. From the condensate fraction, the temperature can be readily extracted. We show that the lowest temperature of 6.3(5)% of the Fermi temperature is obtained, when the decreasing trap depth closely approaches the Fermi energy. To understand the systematic effects that may in uence the results, we carefully investigate the role of the number of bosons and the thermalization dynamics between the two species. Our thermometry approach provides a conceptually simple, accurate, and general way to measure the temperature of deeply degenerate Fermi gases. Since the method is independent of the specific interaction conditions within the Fermi gas, it applies to both weakly and strongly interacting Fermi gases.
Additional file 1 of Expression of salivary immunoglobulins and their association with analgesic neuropeptide opiorphin in anorexia nervosa during adolescence
Creators: name: Paszynska, Elzbieta
name: Hernik, Amadeusz
name: Slopien, Agnieszka
name: Boucher, Yves
name: Tyszkiewicz-Nwafor, Marta
name: Roszak, Magdalena
name: Bilska, Karolina
name: Dmitrzak-Weglarz, Monika
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Physiology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1. STROBE (Strengthening The Reporting of OBservational Studies in Epidemiology) Checklist for the study.
Additional file 2 of Expression of salivary immunoglobulins and their association with analgesic neuropeptide opiorphin in anorexia nervosa during adolescence
Creators: name: Paszynska, Elzbieta
name: Hernik, Amadeusz
name: Slopien, Agnieszka
name: Boucher, Yves
name: Tyszkiewicz-Nwafor, Marta
name: Roszak, Magdalena
name: Bilska, Karolina
name: Dmitrzak-Weglarz, Monika
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Physiology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 2. Supplementary table S1. Summary of age and anthropometric parameters in AN (n=83) and Ctrl (n=79) groups with duration of disease (in the AN group). Supplementary table S2. Concentration of opiorphin, immunoglobulins IgA, IgG and IgM in unstimulated whole saliva.
Detection of methylisocyanate (CH3NCO) in a solar-type protostar
Creators: name: Martín-Doménech, R.
name: Rivilla, V.
name: Jiménez-Serra, I.
name: Quenard, D.
name: Testi, L.
name: Martín-Pintado, J.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We report the detection of the prebiotic molecule CH3NCO in a solar-type protostar, IRAS16293-2422 B. A significant abundance of this species on the surface of the comet 67P/Churyumov-Gerasimenko has been proposed, and it has recently been detected in hot cores around high-mass protostars. We observed IRAS16293-2422 B with ALMA in the 90 GHz to 265 GHz range, and detected 8 unblended transitions of CH3NCO. From our Local Thermodynamic Equilibrium analysis we derived an excitation temperature of 110+-19 K and a column density of (4.0+-0.3)x10^15 cm^-2 , which results in an abundance of <=(1.4+-0.1)x10^-10 with respect to molecular hydrogen. This implies a CH3NCO/HNCO and CH3NCO/NH2CHO column density ratios of ~0.08. Our modelling of the chemistry of CH3NCO suggests that both ice surface and gas phase formation reactions of this molecule are needed to explain the observations.
Additional file 13 of Heterochrony in orthodenticle expression is associated with ommatidial size variation between Drosophila species
Creators: name: Torres-Oliva, Montserrat
name: Buchberger, Elisa
name: Buffry, Alexandra D.
name: Kittelmann, Maike
name: Guerrero, Genoveva
name: Sumner-Rooney, Lauren
name: Gaspar, Pedro
name: Bullinger, Georg C.
name: Jimenez, Javier Figueras
name: Casares, Fernando
name: Arif, Saad
name: Posnien, Nico
name: Nunes, Maria D. S.
name: McGregor, Alistair P.
name: Almudi, Isabel
Publisher: name: figshare
Year: 2025
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 13: Fig. S7. Alignment of D. mauritiana TAM16 and D. simulans y, v, f Otd protein sequences.
The Reversibility Error Method (REM): a new, dynamical fast indicator for planetary dynamics
Creators: name: Panichi, Federico
name: Goździewski, Krzyszof
name: Turchetti, Giorgio
Publisher: name: arXiv
Year: 2017
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: We describe the Reversibility Error Method (REM) and its applications to planetary dynamics. REM is based on the time-reversibility analysis of the phase-space trajectories of conservative Hamiltonian systems. The round-off errors break the time reversibility and the displacement from the initial condition, occurring when we integrate it forward and backward for the same time interval, is related to the dynamical character of the trajectory. If the motion is chaotic, in the sense of non-zero maximal Characteristic Lyapunov Exponent (mLCE), then REM increases exponentially with time, as exp λt, while when the motion is regular (quasi-periodic) then REM increases as a power law in time, as t^α, where α and λ are real coefficients. We compare the REM with a variant of mLCE, the Mean Exponential Growth factor of Nearby Orbits (MEGNO). The test set includes the restricted three body problem and five resonant planetary systems: HD 37124, Kepler-60, Kepler-36, Kepler-29 and Kepler-26. We found a very good agreement between the outcomes of these algorithms. Moreover, the numerical implementation of REM is astonishing simple, and is based on solid theoretical background. The REM requires only a symplectic and time-reversible (symmetric) integrator of the equations of motion. This method is also CPU efficient. It may be particularly useful for the dynamical analysis of multiple planetary systems in the KEPLER sample, characterized by low-eccentricity orbits and relatively weak mutual interactions. As an interesting side-result, we found a possible stable chaos occurrence in the Kepler-29 planetary system.
description: 23 pages, 20 figures
On the Implications of Energy and Momentum Conservation for Particle Emission in A+A Collisions at SPS Energies
Creators: name: Szczurek, Antoni
name: Kiełbowicz, Mirosław
name: Rybicki, Andrzej
Publisher: name: arXiv
Year: 2016
Subjects: subject: Nuclear Theory (nucl-th)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We construct a simple model of heavy ion collisions, local in the impact parameter plane, and appropriate for the SPS energy range. This model can be regarded as a new realization of the "fire-streak" approach, originally applied to studies of lower energy nucleus-nucleus reactions. Starting from local energy and momentum conservation, we nicely describe the broadening of the pion rapidity distribution when going from central to peripheral Pb+Pb collisions at $\sqrt{s_{NN}}$=17.3 GeV. The results of our calculations are compared with SPS experimental data. We discuss the resulting implications on the role of energy and momentum conservation for the dynamics of particle production in heavy ion collisions. A specific space-time picture emerges, where the longitudinal evolution of the system strongly depends on the position in the impact parameter (${b_x}$, ${b_y}$) plane. This picture is consistent with our earlier findings on the longitudinal evolution of the system as deduced from electromagnetic effects on charged pion directed flow, and can provide an explanation for specific low-$p_T$ phenomena seen in the fragmentation region of Pb+Pb collisions.
description: Corrected version, accepted for publication in Phys. Rev. C (13 pages, 9 figures)
Reconceptualizing complex posttraumatic stress disorder: A predictive processing framework for mechanisms and intervention
Creators: name: Putica, Andrea
name: Agathos, James
Publisher: name: La Trobe
Year: 2024
Subjects: classificationCode: 32
subject: Biomedical and clinical sciences
classificationCode: 4203
subject: Health services and systems
classificationCode: 3209
subject: Neurosciences
subject: FOS: Clinical medicine
classificationCode: 42
subject: Health sciences
subject: FOS: Health sciences

description: In this article, we introduce a framework for interpreting Complex Posttraumatic Stress Disorder (C-PTSD) through predictive processing, a neuroscience concept explaining the brain's interpretation and prediction of sensory information. While closely related to PTSD, C-PTSD encompasses additional symptom clusters marked by disturbances in self-organization (DSO), such as negative self-concept, affect dysregulation, and relational difficulties, typically resulting from prolonged traumatic stressors. Our model leverages advances in computational psychiatry and neuroscience, offering a mechanistic explanation for these symptoms by illustrating how prolonged trauma disrupts the brain's predictive processing. Specifically, altered predictive mechanisms contribute to C-PTSD's symptomatology, focusing on DSO: (1) Negative self-concept emerges from maladaptive priors that bias perception towards self-criticism, misaligning expected and actual interoceptive states; (2) Misalignment between predicted and actual interoceptive signals leads to affect dysregulation, with sensitivity to bodily cues; and (3) Relationship challenges arise from skewed social prediction errors, fostering mistrust and withdrawal. This precision-focused approach sheds light on the dynamics underpinning C-PTSD and highlights potential intervention targets aimed at recalibrating the predictive processing system.
High temperature pairing in a strongly interacting two-dimensional Fermi gas
Creators: name: Murthy, Puneet A.
name: Neidig, Mathias
name: Klemt, Ralf
name: Bayha, Luca
name: Boettcher, Igor
name: Enss, Tilman
name: Holten, Marvin
name: Zürn, Gerhard
name: Preiss, Philipp M.
name: Jochim, Selim
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We observe many-body pairing in a two-dimensional gas of ultracold fermionic atoms at temperatures far above the critical temperature for superfluidity. For this, we use spatially resolved radio-frequency spectroscopy to measure pairing energies spanning a wide range of temperatures and interaction strengths. In the strongly interacting regime where the scattering length between fermions is on the same order as the inter-particle spacing, the pairing energy in the normal phase significantly exceeds the intrinsic two-body binding energy of the system and shows a clear dependence on local density. This implies that pairing in this regime is driven by many-body correlations, rather than two-body physics. We find this effect to persist at temperatures close to the Fermi temperature which demonstrates that pairing correlations in strongly interacting two-dimensional fermionic systems are remarkably robust against thermal fluctuations.
description: 12 pages, 9 figures
Additional file 1 of Diversity and dynamics of the CRISPR-Cas systems associated with Bacteroides fragilis in human population
Creators: name: Lam, Tony J.
name: Mortensen, Kate
name: Ye, Yuzhen
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1 Additional file 1: Supplementary information. Supplementary Figure 1 shows the heatmap visualization of the spacer-MGE network and Supplementary Figure 2 shows the heatmap visualization of the host-MGE network.
oppurtunities and challenges of FDI in retail in india
Creators: name: Mulla, M.G.
Publisher: name: figshare
Year: 2022
Subjects: Financial econometrics

description: widespread libaralization and and deregulation of financial market, acros berger mergers and aquisation (m&As ), increasing role of investors willing to invest abroad , rapid advanced in modern telecommunication and computer network have all resulted in a termendous upsurge of international capital flows in india , particularly private capital flows, as compared to official flows over the last two decades . among the various form of foreign investement , foreign direct investement (FDI) flows are usually preffered over the forms of external finance because they are non-debt creating, non-volatile and their returns depends on the performance of projects financed by the investors .
Revealing Hidden Potentials of the q-Space Signal in Breast Cancer
Creators: name: Jaeger, Paul
name: Bickelhaupt, Sebastian
name: Laun, Frederik Bernd
name: Lederer, Wolfgang
name: Heidi, Daniel
name: Kuder, Tristan Anselm
name: Paech, Daniel
name: Bonekamp, David
name: Radbruch, Alexander
name: Delorme, Stefan
name: Schlemmer, Heinz-Peter
name: Steudle, Franziska
name: Maier-Hein, Klaus H.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: Mammography screening for early detection of breast lesions currently suffers from high amounts of false positive findings, which result in unnecessary invasive biopsies. Diffusion-weighted MR images (DWI) can help to reduce many of these false-positive findings prior to biopsy. Current approaches estimate tissue properties by means of quantitative parameters taken from generative, biophysical models fit to the q-space encoded signal under certain assumptions regarding noise and spatial homogeneity. This process is prone to fitting instability and partial information loss due to model simplicity. We reveal unexplored potentials of the signal by integrating all data processing components into a convolutional neural network (CNN) architecture that is designed to propagate clinical target information down to the raw input images. This approach enables simultaneous and target-specific optimization of image normalization, signal exploitation, global representation learning and classification. Using a multicentric data set of 222 patients, we demonstrate that our approach significantly improves clinical decision making with respect to the current state of the art.
description: Accepted conference paper at MICCAI 2017
Chimeras and clusters in networks of hyperbolic chaotic oscillators
Creators: name: Cano, A. V.
name: Cosenza, M. G.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Chaotic Dynamics (nlin.CD)
subject: FOS: Physical sciences

description: We show that chimera states, where differentiated subsets of synchronized and desynchronized dynamical elements coexist, can emerge in networks of hyperbolic chaotic oscillators subject to global interactions. As local dynamics we employ Lozi maps which possess hyperbolic chaotic attractors. We consider a globally coupled system of these maps and use two statistical quantities to describe its collective behavior: the average fraction of elements belonging to clusters and the average standard deviation of state variables. Chimera states, clusters, complete synchronization, and incoherence are thus characterized on the space of parameters of the system. We find that chimera states are related to the formation of clusters in the system. In addition, we show that chimera states arise for a sufficiently long range of interactions in nonlocally coupled networks of these maps. Our results reveal that, under some circumstances, hyperbolicity does not impede the formation of chimera states in networks of coupled chaotic systems, as it had been previously hypothesized.
description: 5 pages, 4 figs
Gaia eclipsing binary and multiple systems. Two-Gaussian models applied to OGLE-III eclipsing binary light curves in the Large Magellanic Cloud
Creators: name: Mowlavi, N.
name: Lecoeur-Taïbi, I.
name: Holl, B.
name: Rimoldini, L.
name: Barblan, F.
name: Prsa, A.
name: Kochoska, A.
name: Süveges, M.
name: Eyer, L.
name: Nienartowicz, K.
name: Jevardat, G.
name: Charnas, J.
name: Guy, L.
name: Audard, M.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: The advent of large scale multi-epoch surveys raises the need for automated light curve (LC) processing. This is particularly true for eclipsing binaries (EBs), which form one of the most populated types of variable objects. The Gaia mission, launched at the end of 2013, is expected to detect of the order of few million EBs over a 5-year mission. We present an automated procedure to characterize EBs based on the geometric morphology of their LCs with two aims: first to study an ensemble of EBs on a statistical ground without the need to model the binary system, and second to enable the automated identification of EBs that display atypical LCs. We model the folded LC geometry of EBs using up to two Gaussian functions for the eclipses and a cosine function for any ellipsoidal-like variability that may be present between the eclipses. The procedure is applied to the OGLE-III data set of EBs in the Large Magellanic Cloud (LMC) as a proof of concept. The bayesian information criterion is used to select the best model among models containing various combinations of those components, as well as to estimate the significance of the components. Based on the two-Gaussian models, EBs with atypical LC geometries are successfully identified in two diagrams, using the Abbe values of the original and residual folded LCs, and the reduced $χ^2$. Cleaning the data set from the atypical cases and further filtering out LCs that contain non-significant eclipse candidates, the ensemble of EBs can be studied on a statistical ground using the two-Gaussian model parameters. For illustration purposes, we present the distribution of projected eccentricities as a function of orbital period for the OGLE-III set of EBs in the LMC, as well as the distribution of their primary versus secondary eclipse widths.
description: 20 pages, 29 figures. Submitted to A&A
The potential for $α$ induced nuclear scattering, reaction and decay, and a resonance-pole-decay model with exact explicit analytical solutions
Creators: name: Sahu, Basudeb
name: Bhoi, Swagatika
Publisher: name: arXiv
Year: 2017
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: The decay of $α$ particle from a nucleus is viewed as a quantum resonance state of a two-body scattering process of the $α$+daughter nucleus pair governed by a novel nucleus-nucleus potential in squared Woods-Saxon form. By the application of the rigorous optical model (OM) potential scattering (S-matrix) theory the genuineness of the potential for the system is established by giving good explanation of the elastic scattering and reaction cross sections data of the $α$+nucleus pair. From the pole position in the complex momentum (k) plane of the S-matrix defined above, the energy and width of the resonance state akin to the decaying state of emission of $α$ particle are extracted and from this width, the result of $α$-decay half-life is derived to account for the experimental result of half-life in the cases of large number of $α$-emitters including heavy and super-heavy nuclei. The S-matrix of the full OM calculation above is replaced by an analytical function expressed in terms of exact Schrödinger solutions of a global potential that closely represents the Coulomb-nuclear interaction in the interior and the pure Coulomb wave functions outside, and the resonant poles of this S-matrix in the complex momentum plane are used to give satisfactory results of decay half-lives of $α$ coming out from varieties of nuclei.
description: Comments are welcome
Anomalous Doppler Effect Singularities in the Radiative Heat Generation, Interaction Force and Frictional Torque for two Rotating Nanoparticles
Creators: name: Volokitin, A. I.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We calculate the quantum heat generation, the interaction force and the frictional torque for two rotating spherical nanoparticles with a radius $R$. In contrast to the static case, when there is an upper limit in the radiative heat transfer between the particles, for two rotating nanoparticles the quantum heat generation rate diverges when the angular velocity becomes equal to the poles in the photon emission rate. These poles arise for the separation $d
description: 7 pages, 3 figures
Imaging the electron charge density in monolayer MoS2 at the Ångstrom scale
Creators: name: Martis, Joel
Publisher: name: Zenodo
Year: 2023

description: update: V2 now includes MoS2_valence_DFT.tif, MoS2_core_DFT.tif, CORE_2X2_Mo_6 DFT charge density files which were used as input to the STEM simulation code. Please see V1 to download all other files and code.

This repository includes the data and Python code used to produce the figures in the manuscript. The code was authored by Joel Martis, please contact him (joelmartis95@gmail.com) for any questions about terminology and usage.

Please see the arXiv preprint for the manuscript and full author list. The Zenodo list only includes the first co-author for brevity.

https://arxiv.org/abs/2210.09478

https://doi.org/10.1038/s41467-023-39304-9
description: https://arxiv.org/abs/2210.09478
Gentle heating by mixing in cooling flow clusters
Creators: name: Hillel, Shlomi
name: Soker, Noam
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We analyze three-dimensional hydrodynamical simulations of the interaction of jets and the bubbles they inflate with the intra-cluster medium (ICM), and show that the heating of the ICM by mixing hot bubble gas with the ICM operates over tens of millions of years, and hence can smooth the sporadic activity of the jets. The inflation process of hot bubbles by propagating jets forms many vortices, and these vortices mix the hot bubble gas with the ICM. The mixing, hence the heating of the ICM, starts immediately after the jets are launched, but continues for tens of millions of years. We suggest that the smoothing of the active galactic nucleus (AGN) sporadic activity by the long-lived vortices accounts for the recent finding of a gentle energy coupling between AGN heating and the ICM.
description: Accepted for publication in ApJ
Additional file 3 of Twinkle twinkle brittle star: the draft genome of Ophioderma brevispinum (Echinodermata: Ophiuroidea) as a resource for regeneration research
Creators: name: Mashanov, Vladimir
name: Machado, Denis Jacob
name: Reid, Robert
name: Brouwer, Cory
name: Kofsky, Janice
name: Janies, Daniel A.
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3 File S3. Bioinformatics protocols for quality control of raw sequence reads, subsequent genome assembly, and the methodology and main results for BUSCO v4.0.6 analyses.
Torque-Controlled Stepping-Strategy Push Recovery: Design and Implementation on the iCub Humanoid Robot
Creators: name: Dafarra, Stefano
name: Romano, Francesco
name: Nori, Francesco
Publisher: name: arXiv
Year: 2017
Subjects: subject: Robotics (cs.RO)
subject: FOS: Computer and information sciences

description: One of the challenges for the robotics community is to deploy robots which can reliably operate in real world scenarios together with humans. A crucial requirement for legged robots is the capability to properly balance on their feet, rejecting external disturbances. iCub is a state-of-the-art humanoid robot which has only recently started to balance on its feet. While the current balancing controller has proved successful in various scenarios, it still misses the capability to properly react to strong pushes by taking steps. This paper goes in this direction. It proposes and implements a control strategy based on the Capture Point concept [1]. Instead of relying on position control, like most of Capture Point related approaches, the proposed strategy generates references for the momentum-based torque controller already implemented on the iCub, thus extending its capabilities to react to external disturbances, while retaining the advantages of torque control when interacting with the environment. Experiments in the Gazebo simulator and on the iCub humanoid robot validate the proposed strategy.
Additional file 6 of Twinkle twinkle brittle star: the draft genome of Ophioderma brevispinum (Echinodermata: Ophiuroidea) as a resource for regeneration research
Creators: name: Mashanov, Vladimir
name: Machado, Denis Jacob
name: Reid, Robert
name: Brouwer, Cory
name: Kofsky, Janice
name: Janies, Daniel A.
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 6 File S6. Expected variation of haploid genome sizes in echinoderms.
Human brain ferritin studied by muon Spin Rotation: a pilot study
Creators: name: Bossoni, Lucia
name: Moursel, Laure Grand
name: Bulk, Marjolein
name: Simon, Brecht G.
name: Webb, Andrew
name: van der Weerd, Louise
name: Huber, Martina
name: Carretta, Pietro
name: Lascialfari, Alessandro
name: Oosterkamp, Tjerk H.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Biological Physics (physics.bio-ph)
subject: Medical Physics (physics.med-ph)
subject: FOS: Physical sciences

description: Muon Spin Rotation is employed to investigate the spin dynamics of ferritin proteins isolated from the brain of an Alzheimer's disease (AD) patient and of a healthy control, using a sample of horse-spleen ferritin as a reference. A model based on the Néel theory of superparamagnetism is developed in order to interpret the spin relaxation rate of the muons stopped by the core of the protein. Using this model, our preliminary observations show that ferritins from the healthy control are filled with a mineral compatible with ferrihydrite, while ferritins from the AD patient contain a crystalline phase with a larger magnetocrystalline anisotropy, possibly compatible with magnetite or maghemite.
description: 16 pages, 9 figures
Additional file 5 of Twinkle twinkle brittle star: the draft genome of Ophioderma brevispinum (Echinodermata: Ophiuroidea) as a resource for regeneration research
Creators: name: Mashanov, Vladimir
name: Machado, Denis Jacob
name: Reid, Robert
name: Brouwer, Cory
name: Kofsky, Janice
name: Janies, Daniel A.
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 5 File S5. Protocols for Feulgen image analysis densitometry and sequence-based genome size estimation.
Additional file 7 of Twinkle twinkle brittle star: the draft genome of Ophioderma brevispinum (Echinodermata: Ophiuroidea) as a resource for regeneration research
Creators: name: Mashanov, Vladimir
name: Machado, Denis Jacob
name: Reid, Robert
name: Brouwer, Cory
name: Kofsky, Janice
name: Janies, Daniel A.
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 7 File S7. Protocol for de novo DNA repeat assembly from shotgun sequence reads.
"A Full-fledged Commit Message Quality Checker Based on Machine Learning", supplementary material
Creators: name: Faragó, David
name: Färber, Michael
name: Petrov, Christian
Publisher: name: figshare
Year: 2023
Subjects: Software engineering not elsewhere classified
Artificial intelligence not elsewhere classified

description: Supplementary material to: D. Faragó, M. Färber, and C. Petrov, “A Full-fledged Commit Message Quality Checker Based on Machine Learning,” 2023 IEEE 47th Annual Computers, Software, and Applications Conference (COMPSAC), May 2023. DOI: 10.1109/COMPSAC57700.2023.00108. Please refer to the included README for more information. https://github.com/commit-message-collective/beams-commit-message-checker
FDI in retail sector in india
Creators: name: Mulla, M.G.
Publisher: name: figshare
Year: 2022
Subjects: Industrial marketing

description: the indian retail industry is one of the most vibrant industries in the country. it is currently ranked at 26th position among the top 30 developing countries identified by management consulting firms AT kearney in the 2014 global retail development index (GRDI)india remains and appealing long term retail destimation for several resons starting with its demography - half of indian popullation is less than 30 years of age and roghly one-third of the populatin lives in cities. the disposable income of indians is increasing allowing them to spend more and try new products , brands and categories.
Additional file 8 of Twinkle twinkle brittle star: the draft genome of Ophioderma brevispinum (Echinodermata: Ophiuroidea) as a resource for regeneration research
Creators: name: Mashanov, Vladimir
name: Machado, Denis Jacob
name: Reid, Robert
name: Brouwer, Cory
name: Kofsky, Janice
name: Janies, Daniel A.
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 8 File S8. Protocol for DNA repeat identification.
Additional file 9 of Twinkle twinkle brittle star: the draft genome of Ophioderma brevispinum (Echinodermata: Ophiuroidea) as a resource for regeneration research
Creators: name: Mashanov, Vladimir
name: Machado, Denis Jacob
name: Reid, Robert
name: Brouwer, Cory
name: Kofsky, Janice
name: Janies, Daniel A.
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 9 File S9. Template scripts for gene prediction and annotation.
Additional file 1 of Point-of-care tests in the emergency medical services: a scoping review
Creators: name: Moore, T. H. M.
name: Dawson, S.
name: Kirby, K.
name: Body, R.
name: Thompson, A.
name: Adepoju, Y. O.
name: Perry, R.
name: Nicholson, H.
name: Dinnes, J.
name: Mitchell, K.
name: Savović, J.
name: Voss, S.
name: Benger, J. R.
Publisher: name: figshare
Year: 2025
Subjects: Medicine
Biotechnology
Science Policy

description: Supplementary Material 1
Lebensmittel- und Ernährungsforschung in Deutschland
Creators: name: Deutsche Forschungsgemeinschaft | Ständige Senatskommission zur gesundheitlichen Bewertung von Lebensmitteln
Publisher: name: Zenodo
Year: 2024
Subjects: Food and nutrition research
Lebensmittel- und Ernährungsforschung
Deutsche Forschungsgemeinschaft
DFG
German Research Foundation
Ständige Senatskommission zur gesundheitlichen Bewertung von Lebensmitteln
Permanent Senate Commission on Food Safety

description: Das Positionspapier "Lebensmittel- und Ernährungsforschung in Deutschland" der DFG-Senatskommission zur gesundheitlichen Bewertung von Lebensmitteln (SKLM) gibt einen Überblick über die vielfältigen Forschungsthemen des Forschungsbereichs. Dieser wird ergänzt von einer Präsentation der zahlreichen Forschungseinrichtungen sowie der in diesem Bereich tätigen Forschungsförderorganisationen. Erstmalig wurden hierzu umfangreiche Daten erhoben und zusammengestellt. Studium, Lehre und frühen akademischen Karrierestadien ist ein eigenes Kapitel gewidmet.  Das Papier schließt mit Empfehlungen und Forderungen zur Weiterentwicklung und Stärkung des Forschungsbereichs.

The position paper "Food and Nutrition Research in Germany" of the DFG Senate Commission on Food Safety (SKLM) provides an overview of the diverse research topics in the research area. It is complemented by a presentation of the numerous research institutions as well as the research funding agencies active in this field. For the first time, extensive data were collected and compiled. A separate chapter is devoted to study, teaching and early academic career stages. The paper concludes with recommendations and demands for the further development and strengthening of the research area.
The Gay and Lesbian Immigration Task Force, the Australian border and homosexual people’s mobility in the 1980s and 1990s
Creators: name: Humphris, Annalise Clare
Publisher: name: Macquarie University
Year: 2024
Subjects: classificationCode: 430302
subject: Australian history

description: In 1985, following lobbying by the Gay and Lesbian Immigration Task Force (GLITF), Immigration Minister Chris Hurford partially and covertly recognised same-sex relationships when he agreed to use ministerial discretion to personally assess migration applications from non-citizens in committed relationships with homosexual Australians. In the years that followed, a staggered, and staggering history of lobbying, advances and obstructions to homosexual people’s mobility unfolded through the site of the Australian border as GLITF pursued equality in migration.The history of GLITF and its work highlights the centrality of sexuality to migration, offering insights into the operation of the heterosexist Australian border as well as the management and nature of homosexual migrants’ mobility. This thesis demonstrates that the border was not merely a solid, static, sovereign line, but a much messier set of practices and policies that were enacted unevenly and inconsistently, subsequently producing differentiated mobility along lines of sexuality, class, health and race.Each of the chapters in this thesis highlights the ideas, processes and forces that animated the operation of the border and differentiated mobility, simultaneously revealing that the production and management of homosexual migrants’ mobility was not only the purview of state actors, but non-state actors like GLITF, too. As such, GLITF’s role as lobbyists and activists brought them into partnership with the government through the 1980s and 1990s, affording them opportunities to co-govern the border and mobility.From GLITF lobbying for recognition of homosexual relationships in migration policy and advocating for homosexual inter-country couples in times of distress and discrimination, to GLITF refusing to assist with “marriages of convenience” and the issue of testing migrants for HIV, the Australian border has a rich history of homosexuality to explore, with GLITF an integral part. GLITF was constantly contesting the border and the ideas and practices that constituted it, pushing for equality. Progress, however, was more ambiguous than it was triumphant.
Semiparametric accelerated failure time model estimation with time-varying covariates
Creators: name: Ma, Ding
Publisher: name: Macquarie University
Year: 2024
Subjects: classificationCode: 490502
subject: Biostatistics

description: The semiparametric accelerated failure time model is a potential alternative to the popular Cox proportional hazards model, especially when the proportional hazards assumption is violated. The expression of an accelerated failure time model is simply in the form of a classical log-linear model, and is generalised to incorporate censored data. It enables direct interpretation of covariate effects on the natural logarithm of the survival time. However, the estimation of a semiparametric accelerated failure time model is in general difficult, particularly in computation. In this thesis, we propose a penalised likelihood estimation method for semiparametric accelerated failure time models in two situations. The first situation is the semiparametric accelerated failure time model with right-censored time-to-event data and time-varying covariates. The second situation is a more generalised situation of the first one, which is the semiparametric accelerated failure time model with partly interval-censored time-to-event data and time-varying covariates. In the estimation procedures for both situations, the Gaussian basis functions are adopted to build a smooth approximation of the nonparametric baseline hazard function. A roughness penalty is incorporated to further guarantee the smoothness in the likelihood. The constrained optimisation problems are solved using a combination of two algorithms. We conduct comprehensive simulations to demonstrate the performance of the proposed method, and apply the method in one real data application corresponding to the two situations mentioned above. The conclusion and some remarks are given at the end of the thesis.
Additional file 1 of CircWalk: a novel approach to predict CircRNA-disease association based on heterogeneous network representation learning
Creators: name: Kouhsar, Morteza
name: Kashaninia, Esra
name: Mardani, Behnam
name: Rabiee, Hamid R.
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Table S1. Classifiers hyperparameters.
Group field theory for quantum gravity minimally coupled to a scalar field
Creators: name: Li, Yang
name: Oriti, Daniele
name: Zhang, Mingyi
Publisher: name: arXiv
Year: 2017
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We construct a group field theory model for quantum gravity minimally coupled to relativistic scalar fields, defining as well a corresponding discrete gravity path integral (and, implicitly, a coupled spin foam model) in its Feynman expansion. We also analyze a number of variations of the same model, the corresponding discrete gravity path integrals, its generalization to the coupling of multiple scalar fields and discuss its possible applications to the extraction of effective cosmological dynamics from the full quantum gravity formalism, in the context of group field theory condensate cosmology.
description: 41 pages, 2 figures
On a remarkable electromagnetic field in the Einstein Universe
Creators: name: Kopiński, Jarosław
name: Natário, José
Publisher: name: arXiv
Year: 2017
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We present a time-dependent solution of the Maxwell equations in the Einstein universe, whose electric and magnetic fields, as seen by the stationary observers, are aligned with the Clifford parallels of the $3$-sphere $S^3$. The conformal equivalence between Minkowski's spacetime and (a region of) the Einstein cylinder is then exploited in order to obtain a knotted, finite energy, radiating solution of the Maxwell equations in flat spacetime. We also discuss similar electromagnetic fields in expanding closed Friedmann models, and compute the matter content of such configurations.
description: Remarks added
Turbo-Assisted Direct Solar Air Heater for Medium Temperature Industrial Processes Using Linear Fresnel Collectors. Assessment on Daily and Yearly Basis
Creators: name: Famiglietti, Antonio
name: Lecuona, Antonio
name: Ibarra, Mercedes
name: Roa, Javier
Publisher: name: Zenodo
Year: 2021

description: The study analyzes an innovative concentrating solar thermal system aimed at the direct production of hot air for industrial applications. Air is heated inside linear Fresnel collectors in an open to atmosphere circuit, not requiring the use of a primary heat transfer fluid and a heat exchanger, with their associated cost and maintenance. Matching an automotive turbocharger with the solar field avoids auxiliary energy consumption for pumping the airflow. The detailed quasi-steady numerical model implemented, including commercial collector and turbocharger technical features, allows to scrutinize the daily and yearly operating time profile of a medium scale plant with a 633.6 m2 solar field. Considering the typical meteorological year of the selected location (Madrid, Spain), the numerical results indicate that hot air is provided at a remarkable quasi-constant temperature between 300 °C and 400 °C despite the solar variations, delivering 330 MW h per year without overheating the receiver evacuated tubes.
Additional file 1 of The telomere maintenance mechanism spectrum and its dynamics in gliomas
Creators: name: Kim, Sojin
name: Chowdhury, Tamrin
name: Yu, Hyeon Jong
name: Kahng, Jee Ye
name: Lee, Chae Eun
name: Choi, Seung Ah.
name: Kim, Kyung-Min
name: Kang, Ho
name: Lee, Joo Ho
name: Lee, Soon-Tae
name: Won, Jae-Kyung
name: Kim, Kyung Hyun
name: Kim, Min-Sung
name: Lee, Ji Yeoun
name: Kim, Jin Wook
name: Kim, Yong-Hwy
name: Kim, Tae Min
name: Choi, Seung Hong
name: Phi, Ji Hoon
name: Shin, Young-Kyoung
name: Ku, Ja-Lok
name: Lee, Sungyoung
name: Yun, Hongseok
name: Lee, Hwajin
name: Kim, Dokyoung
name: Kim, Kyoungmi
name: Hur, Junho K.
name: Park, Sung-Hye
name: Kim, Seung-Ki
name: Park, Chul-Kee
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Cancer

description: Additional file 1: Figs. S1–S13.
Spinor field in Bianchi type-$IX$ space-time
Creators: name: Saha, Bijan
Publisher: name: arXiv
Year: 2017
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Within the scope of Bianchi type-$IX$ we have studied the role of spinor field in the evolution of the Universe. It is found that unlike the diagonal Bianchi models in this case the components of energy-momentum tensor of spinor field along the principal axis are not the same, i.e. $T_1^1 \ne T_2^2 \ne T_3^3$, even in absence of spinor field nonlinearity. The presence of nontrivial non-diagonal components of energy-momentum tensor of the spinor field imposes severe restrictions both on geometry of space-time and on the spinor field itself. As a result the space-time turns out to be either locally rotationally symmetric or isotropic. In this paper we considered the Bianchi type-$IX$ space-time both for a trivial $b$, that corresponds to standard $BIX$ and the one with a non-trivial $b$. It was found that a positive $λ_1$ gives rise to an oscillatory mode of expansion, while a trivial $λ_1$ leads to rapid expansion at the early stage of evolution.
description: 20 pages, 12 Figures, in the previous version there were some mistakes which are corrected, beside the conventional Bianchi type IX model a model with a more general $h(x_3)$ is studied
Additional file 1 of Hyssopus cuspidatus volatile oil: a potential treatment for steroid-resistant asthma via inhibition of neutrophil extracellular traps
Creators: name: Wang, Xu
name: Peng, Hui-Ming
name: Zhang, Meng-Ru
name: Li, Jing-Jing
name: Zhao, Chuan-Peng
name: Zhang, Ya-Li
name: Wang, Si-Yu
name: Zhu, Si-Ying
name: Lu, Jian-Kang
name: Yin, Hai-Long
name: Yin, Qiang
name: Fang, Jin-Bo
Publisher: name: figshare
Year: 2025
Subjects: subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Hematology

description: Additional file 1
Determination of the density and temperature dependence of the shear viscosity of a unitary Fermi gas based on hydrodynamic flow
Creators: name: Bluhm, Marcus
name: Hou, Jiaxun
name: Schaefer, Thomas
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We determine the shear viscosity of the ultracold Fermi gas at unitarity in the normal phase using hydrodynamic expansion data. The analysis is based on a generalized fluid dynamic framework which ensures a smooth transition between the fluid dynamic core of the cloud and the ballistic corona. We use expansion data taken by Joseph et al. and measurements of the equation of state by Ku et al. We find that the shear viscosity to particle density ratio just above the critical temperature is $η/n|_{T_c}=0.41\pm 0.11$. We also obtain evidence that the shear viscosity to entropy density ratio has a minimum slightly above $T_c$ with $η/s |_{\it min}=0.50\pm 0.10$.
description: Version to appear in PRL
Essays on applied econometric analysis in macroeconomics and finance
Creators: name: Rahman, Md Arafat
Publisher: name: Macquarie University
Year: 2024
Subjects: classificationCode: 350203
subject: Financial econometrics

description: This thesis comprises three independent papers employing cutting-edge timeseries econometrics techniques in macroeconomics and finance. The first paper predicts cash rates in Australia using various discrete choice models and forecast combination approaches. The second paper investigates the impact of COVID19 on the U.S. equity market, identifying crisis episodes across sectors with pseudo-real-time methods. Furthermore, we compare the unconditional mean, variance, and correlation network structure of stock market returns in pre- and post-onset of COVID-19. The third paper identifies the global housing network structure and explores its driving factors. These findings provide valuable insights for market participants, policymakers, and investors.
Doping Dependence of Collective Spin and Orbital Excitations in Spin 1 Quantum Antiferromagnet La$_{2-x}$Sr$_x$NiO$_4$ Observed by X-rays
Creators: name: Fabbris, G.
name: Meyers, D.
name: Xu, L.
name: Katukuri, V. M.
name: Hozoi, L.
name: Liu, X.
name: Chen, Z. -Y.
name: Okamoto, J.
name: Schmitt, T.
name: Uldry, A.
name: Delley, B.
name: Gu, G. D.
name: Prabhakaran, D.
name: Boothroyd, A. T.
name: Brink, J. van den
name: Huang, D. J.
name: Dean, M. P. M.
Publisher: name: arXiv
Year: 2016
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We report the first empirical demonstration that resonant inelastic x-ray scattering (RIXS) is sensitive to \emph{collective} magnetic excitations in $S=1$ systems by probing the Ni $L_3$-edge of La$_{2-x}$Sr$_x$NiO$_4$ ($x = 0, 0.33, 0.45$). The magnetic excitation peak is asymmetric, indicating the presence of single and multi spin-flip excitations. As the hole doping level is increased, the zone boundary magnon energy is suppressed at a much larger rate than that in hole doped cuprates. Based on the analysis of the orbital and charge excitations observed by RIXS, we argue that this difference is related to the orbital character of the doped holes in these two families. This work establishes RIXS as a probe of fundamental magnetic interactions in nickelates opening the way towards studies of heterostructures and ultra-fast pump-probe experiments.
description: 8 pages, 4 figures, see ancillary files for the supplemental material
Additional file 1 of Lymphocyte antigen 6G6D-mediated modulation through p38α MAPK and DNA methylation in colorectal cancer
Creators: name: Caruso, Francesca Pia
name: D’Andrea, Mario Rosario
name: Coppola, Luigi
name: Landriscina, Matteo
name: Condelli, Valentina
name: Cerulo, Luigi
name: Giordano, Guido
name: Porras, Almudena
name: Pancione, Massimo
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Supplementary figures 1-6.