cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
HEAppE Middleware: From Desktop to HPC
Creators: name: Konvička, Jakub
name: Svatoň, Václav
name: Křenek, Jan
Publisher: name: Zenodo
Year: 2024
Subjects: HPC
HEAppE
middleware

description: HEAppE Middleware is IT4Innovations’ in-house implementation of HPC-as-a-Service concept. It is being continuously developed for a more than a 10 years taking into account the user requirements and security policies and constraints of different HPC or Data centres while supporting a number of widely used HPC workload managers. Via simple and easy-to-use REST API the end-users can manage the complete HPC job life cycle, file transfers, and HEAppE-specific functionality. HEAppE provides a user-friendly, secure, and cost-effective solution for the end-users or third-party applications on how to remotely access supercomputing resources without the HPC-specific know-how. 

This poster was presented at the conference EURO-PAR and details published as a paper in the conference proceedings.
Additional file 11: Table S7. of
                     WUSCHEL-RELATED HOMEOBOX 2 is important for protoderm and suspensor development in the gymnosperm Norway spruce
Creators: name: Tianqing Zhu
name: Moschou, Panagiotis
name: JosĂŠ Alvarez
name: Sohlberg, Joel
name: Arnold, Sara
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Developmental Biology
subject: Marine Biology

description: Development of mature embryos (MEs) in the control and line XVE-WOX2i.12. (DOCX 12Â kb)
Essays on capitalizing Research and Development expenditures
Creators: name: Huang, Ning
Publisher: name: University of British Columbia
Year: 2009

description: The next international version of the System of National Accounts (SNA) will recommend that Research and Development (R&D) expenditures be treated as capital formation instead of immediate expenses as in the present SNA 1993. This recommendation brings in challenges to many aspects of measuring R&D capital stocks. This dissertation focuses on measurement issues associated with capitalizing R&D expenditures. In the first paper, we develop a simple model on production technology that allows for monopolistic competition. It enables estimation of annual depreciation rates for R&D capital. We treat R&D capital as a technology shifter instead of an explicit input factor. Both the R&D stock and the time trend are used to capture technological progress. The R&D depreciation rates and markup factors are estimated for the U.S. manufacturing sector and four U.S. knowledge intensive industries. The second paper looks at the net benefits of a R&D project in the context of a very simple intertemporal general equilibrium model and suggests that R&D expenditures be amortized using the matching principle that has been developed in the accounting literature. This approach matches fixed costs of a project to a stream of future benefits. Of particular interest is the evaluation of the net benefits of a publicly funded project where the results are made freely available to the public. In the third paper, we propose a new method of treating R&D expenditure in the growth accounting framework and investigate how to construct the associated measures for the stock of the R&D capital. We distinguish general knowledge from the more specific technologies applied in goods and services production, and treat them differently in the growth accounting framework. In addition, we derive a general formula to measure the newly created knowledge increments that depend not only on R&D expenditures but also on the existing general knowledge stock and knowledge productivity. We illustrate our new methodology for the treatment of R&D using U.S. manufacturing data for the last half century.
Additional file 5: of
                     Retrozymes are a unique family of non-autonomous retrotransposons with hammerhead ribozymes that propagate in plants through circular RNAs
Creators: name: Cervera, Amelia
name: Denisse Urbina
name: Peña, Marcos De La
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: Circular and linear retrozyme RNAs in J. curcas and F. ananassa. A: Double PAGE analysis of an RNA extract (~20 μg) from J. curcas leaves. A gel stripe from a 5 % native polyacrylamide gel containing RNAs of 600–900 nt (left) was cut out and run on top of a second 5 % denaturing polyacrylamide gel (center). The corresponding Northern blot (right), using a digoxigenin-labelled J. curcas retrozyme fragment as a probe, revealed the presence of both circular and linear RNA forms. B: Northern blot analysis of RNA extracts (~30 μg each) from J. curcas leaves, young seedlings and seeds. Samples were run on a 5 % denaturing PAGE and were detected using the same probe as in panel A. C: An in vitro transcription of a previously cloned full genomic retrozyme of F. ananassa was run on a 5 % denaturing PAGE. The RNAs corresponding to the uncleaved full RNA (1134 nt) and double self-cleaved retrozyme RNA (679 nt) were cut out and purified (marked in red). D: Purified retrozyme RNA (679 nt) was circularized with a tRNA ligase for 2 h and run on a 5 % denaturing PAGE. The circularized RNA (upper band) was cut out and purified. E: Northern blot hybridization of a F. ananassa RNA extract (~30 μg) and previously purified RNA markers (linear, circular and uncleaved full retrozyme RNAs, ~1 ng each) run on a 5 % native PAGE. F: Northern blot hybridization of the same RNA samples as in panel E run on a 5 % denaturing PAGE. Ethidium bromide staining of the 5S rRNA is shown at the bottom as a loading control. (PDF 728 kb)
Higher-dimensional processing using a photonic tensor core with continuous-time data
Creators: name: Bowei Dong
name: Samarth Aggarwal
name: Wen Zhou
name: Utku Emre Ali
name: Nikolaos Farmakidis
name: June Sang Lee
name: Yuhan He
name: Xuan Li
name: Dim-Lee Kwong
name: C. D. Wright
name: Wolfram H. P. Pernice
name: H. Bhaskaran
Publisher: name: Zenodo
Year: 2024

description: New developments in hardware-based ‘accelerators’ range from electronic tensor cores and memristor-based arrays to photonic implementations. The goal of these approaches is to handle the exponentially growing computational load of machine learning, which currently requires the doubling of hardware capability approximately every 3.5 months. One solution is increasing the data dimensionality that is processable by such hardware. Although two-dimensional data processing by multiplexing space and wavelength has been previously reported, the use of three-dimensional processing has not yet been implemented in hardware. In this paper, we introduce the radio-frequency modulation of photonic signals to increase parallelization, adding an additional dimension to the data alongside spatially distributed non-volatile memories and wavelength multiplexing. We leverage higher-dimensional processing to configure such a system to an architecture compatible with edge computing frameworks. Our system achieves a parallelism of 100, two orders higher than implementations using only the spatial and wavelength degrees of freedom. We demonstrate this by performing a synchronous convolution of 100 clinical electrocardiogram signals from patients with cardiovascular diseases, and constructing a convolutional neural network capable of identifying patients at sudden death risk with 93.5% accuracy.
Additional file 6: Table S3. of
                     WUSCHEL-RELATED HOMEOBOX 2 is important for protoderm and suspensor development in the gymnosperm Norway spruce
Creators: name: Tianqing Zhu
name: Moschou, Panagiotis
name: JosĂŠ Alvarez
name: Sohlberg, Joel
name: Arnold, Sara
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Developmental Biology

description: Frequency of early embryos (EEs) with normal morphology in the control and PaWOX2 RNAi lines. (DOCX 13Â kb)
Emerging environmental, molecular, and genetic risk factors in stable coronary artery disease
Creators: name: Heslop, Claire Louise
Publisher: name: University of British Columbia
Year: 2009

description: Both environmental and inherited risk factors make significant contributions to coronary artery disease, however susceptibility and age of disease onset for individuals with similar risk profiles varies widely. Novel biomarkers may yet be found which could improve detection of high-risk individuals, and highlight new areas of research for treatment discovery. This thesis explores risk factors for coronary artery disease and cardiovascular mortality. The first study investigates one specific environmental variable—neighbourhood socioeconomic status—in a cohort of patients who underwent selective coronary angiography. In patients with coronary artery disease, neighbourhood-level disparities contributed to risk of non-cardiovascular mortality, particularly to deaths from cancer, but did not influence cardiovascular mortality risk. Although disparities in health and access to care may persist, these findings suggest other risk factors should be explored to improve cardiovascular patient risk assessment. Inflammation and oxidative stress contribute to all stages of atherosclerosis, and subsequent chapters focus on contributions of these pathways to cardiovascular risk. Interleukin-6 and C-reactive protein haplotypes were compared to plasma concentrations for prediction of coronary artery disease and cardiovascular mortality. Significant relationships observed between haplotypes, plasma concentrations, angiographic disease, and cardiovascular mortality did not demonstrate causality, which underscores the challenge of distinguishing causal from confounding pathways. Plasma oxidative stress biomarkers were measured to evaluate their utility for risk prediction, compared to conventional cardiovascular risk factors. Elevated plasma myeloperoxidase predicted coronary artery disease and cardiovascular mortality risk, independent of conventional risk factors and disease severity. Polymorphisms in candidate oxidative stress genes were also explored for associations with coronary artery disease, and effects on plasma biomarkers. A compound genotype of five polymorphisms predicted angiographic coronary artery disease and elevations in plasma myeloperoxidase. Following validation, these polymorphisms may be useful markers of lifetime oxidative stress burden and cardiovascular disease risk. Novel cardiovascular risk markers are explored in this thesis, and tested for association with angiographic coronary artery disease, conventional risk factors, and risk of mortality. New questions are raised regarding how disease susceptibility is influenced by environmental and inherited factors, and ideas for future research are discussed.
Zaitunia afghana
Creators: name: Sajadi, Samin Sadat
name: Wesal, Mohammad Wasil
name: Zamani, Alireza
name: Moradmand, Majid
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Filistatidae
Zaitunia
Zaitunia afghana

description: 23) Zaitunia afghana (Roewer, 1962) *
Records: Helmand: [Hel4].
Distribution: Afghanistan.
References:
Filistata afghana Roewer, 1962b: 12 (♀; as per Zonstein & Marusik 2016: 31, the figs 6 and 9 illustrate a paratype that belongs to another species, Z. huberi).
Zaitunia afghana: Zonstein et al. 2013: 69.— Zonstein & Marusik 2016: 31, fig. 14A–K (♀).
description: Published as part of Sajadi, Samin Sadat, Wesal, Mohammad Wasil, Zamani, Alireza & Moradmand, Majid, 2024, A checklist of the spiders (Arachnida: Araneae) of Afghanistan, pp. 1-50 in Zootaxa 5551 (1) on page 10, DOI: 10.11646/zootaxa.5551.1.1, http://zenodo.org/record/14389939
Additional file 1: Table S1. of Identification of definitive serum biomarkers associated with disease activity in primary Sjögren’s syndrome
Creators: name: Nishikawa, Ayumi
name: Suzuki, Katsuya
name: Kassai, Yoshiaki
name: Gotou, Yuumi
name: Takiguchi, Maiko
name: Miyazaki, Takahiro
name: Yoshimoto, Keiko
name: Hidekata Yasuoka
name: Yamaoka, Kunihiro
name: Rimpei Morita
name: Yoshimura, Akihiko
name: Takeuchi, Tsutomu
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Marine Biology
subject: 60506 Virology

description: Differentially expressed serum proteins in patients with pSS compared to HCs. (DOC 85 kb)
Amtliches Verzeichnis der Lehrer, Beamten und Studierenden an der Königlich-Bayerischen Ludwig-Maximilians-Universität zu München 1876/77; 1876
Creators: name: (:Unav)
Publisher: name: Universitätsbibliothek der Ludwig-Maximilians-Universität München
Year: 1876

description: Textfreie Seiten wurden entfernt.
Additional file 1: Table S1. of Outcomes of abdominoperineal resection for management of anal cancer in HIV-positive patients: a national case review
Creators: name: Leeds, Ira
name: Alturki, Hasan
name: Canner, Joseph
name: Schneider, Eric
name: Efron, Jonathan
name: Wick, Elizabeth
name: Gearhart, Susan
name: Safar, Bashar
name: Fang, Sandy
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: Computational Biology

description: ICD-9 codes grouped by categories for patient comorbidities and in-hospital complications. (DOC 42Â kb)
Additional file 12: Table S2. of
                     Retrozymes are a unique family of non-autonomous retrotransposons with hammerhead ribozymes that propagate in plants through circular RNAs
Creators: name: Cervera, Amelia
name: Denisse Urbina
name: PeĂąa, Marcos De La
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Plant Biology

description: Oligonucleotide compilation. (PDF 58 kb)
Additional file 1: of Quality assessments for cancer centers in the European Union
Creators: name: Wind, Anke
name: Abinaya Rajan
name: Harten, Wim Van
Publisher: name: Figshare
Year: 2016
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Science Policy

description: Questionnaire Quality assessments Cancer Centers. This file contains the survey that was send to the cancer centers to obtain the data. (DOC 40Â kb)
Zaitunia huberi Zonstein & Marusik 2016
Creators: name: Sajadi, Samin Sadat
name: Wesal, Mohammad Wasil
name: Zamani, Alireza
name: Moradmand, Majid
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Filistatidae
Zaitunia
Zaitunia huberi

description: 24) Zaitunia huberi Zonstein & Marusik, 2016 *
Records: Baghlan: [Bag1].
Distribution: Afghanistan.
References:
Filistata afghana: Roewer 1962b: 12, figs 6, 9 (♀; in part, as per Zonstein & Marusik, 2016: 31).
Zaitunia afghana: Zonstein et al. 2013: 69, figs 13, 21–27 (♀; in part, as per Zonstein & Marusik 2016: 60).
Zaitunia huberi Zonstein & Marusik, 2016: 60, fig. 30A–F (♀).
description: Published as part of Sajadi, Samin Sadat, Wesal, Mohammad Wasil, Zamani, Alireza & Moradmand, Majid, 2024, A checklist of the spiders (Arachnida: Araneae) of Afghanistan, pp. 1-50 in Zootaxa 5551 (1) on page 10, DOI: 10.11646/zootaxa.5551.1.1, http://zenodo.org/record/14389939
Prolixus Beard, Fan & Walter 2005
Creators: name: Xu, Yun
name: Zhang, Fei-Ping
name: Zhang, Zhi-Qiang
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Prostigmata
Tenuipalpidae
Prolixus

description: Genus Prolixus Beard, Fan & Walter, 2005
Prolixus Beard, Fan & Walter, 2005: 164; Mesa et al., 2009: 111; Beard & Ochoa, 2011: 32; Xu & Zhang, 2014: 2; Xu et al., 2017b: 1522.
Type species: Prolixus forsteri Beard, Fan & Walter, 2005.
description: Published as part of Xu, Yun, Zhang, Fei-Ping & Zhang, Zhi-Qiang, 2018, Description of a new species of Prolixus (Acari: Trombidiformes: Tenuipalpidae from Austroderia splendens (Poaceae) in New Zealand, with discussion of its ontogenetic patterns in chaetotaxy, pp. 158-177 in Zootaxa 4540 (1) on page 159, DOI: 10.11646/zootaxa.4540.1.11, http://zenodo.org/record/2616094
Zaitunia huberi, sp. nov.
Creators: name: Sergei Zonstein
name: Yuri M. Marusik
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Filistatidae
Zaitunia
Zaitunia huberi

description: Zaitunia huberi sp. nov.
urn:lsid:zoobank.org:act:F999D3D3-7D62-44BD-9297-AB022AEA817E
Fig. 30 A–F
Filistata afghana Roewer, 1962: 12, figs 6, 9 (♀, in part, misidentified).
Zaitunia afghana – Zonstein et al. 2013: 69, figs 13, 21–27 (♀, misidentified).
Diagnosis
By structure of the vulva, Z. huberi sp. nov. resemble Z. beshkentica but differ from them by the shape of the median receptacles, which are shorter and round (vs longer and tube-shaped in Z. beshkentica, cf. Figs 29 I–K, 30C–E).
Etymology
The specific epithet is given after the prominent German arachnologist Bernhard Huber, who has transferred some misplaced Asian genera from Pholcidae to Filistatidae.
Material examined
Holotype
AFGHANISTAN: ♀, surroundings of Pol-e Khumri city, 35º57' N, 68º42' E, 700 m, 9 Nov. 1957, K. Lindberg (SMF).
Paratype
AFGHANISTAN: 1 juv., collected and deposited together with holotype.
Description
Female
HABITUS. See Fig. 30 A–B.
COLOUR. Whole body and legs light brownish-yellow, abdomen without dorsal pattern, tarsi of palp and legs I–IV darkened, eye tubercle blackish-brown.
CARAPACE. 2.13 long, 1.77 wide.
EYES. AME 0.09, ALE 0.23, PLE 0.20, PME 0.20, AME–AME 0.11.
ENDOGYNE (Fig. 30 C–E). Both pairs of receptacles globular, median receptacles separated from each other by the same distance as lateral and median receptacles; median receptacles larger, separated by less than one diameter.
LEG MEASUREMENTS.
FemurPatellaTibiaMetatarsusTarsusTotalPalp1.170.650.87―0.973.66I2.330.872.231.971.308.70II1.970.831.651.631.057.13III1.750.751.331.380.976.18IV2.370.801.851.831.037.88
Male
Unknown.
Note
See comments in the redescription of the holotype of Z. afghana. Both of these species are very similar in somatic characters, which probably misled Roewer (1962). Nevertheless, they differ so drastically in the structure of the endogyne (cf. Figs 14 G–K, 30C–E) that they are assigned here to different species groups.
Distribution
Known only from the type locality (Fig. 49).
description: Published as part of Sergei Zonstein & Yuri M. Marusik, 2016, A revision of the spider genus Zaitunia (Araneae, Filistatidae), pp. 1-97 in European Journal of Taxonomy 214 on pages 60-62, DOI: 10.5852/ejt.2016.214, http://zenodo.org/record/269335
Three essays in empirical labour economics : wage determination in local labour markets
Creators: name: Sand, Benjamin MacLean
Publisher: name: University of British Columbia
Year: 2009

description: This dissertation consists of three empirical essays that examine different aspects of wage determination in local labour markets. The first essay investigates whether or not there are human capital externalities or spill-overs from education. I find that the fraction of college graduates in U.S. cities is associated with higher wages in the 1980s but not in the 1990s. To rationalize this pattern, I empirically investigate a model of structural change by Acemoglu (1999) and find considerable support for it in a number of dimensions. Consistent with the notion that there has been a structural change in the labour market, increases in the supply of skilled labour in the 1990s induce a change in the composition of jobs, increase inequality, unemployment, the return to education, and the wages of high-skill workers and harm low-skill workers. The second essay, which is co-authored with Paul Beaudry and David Green, develops a multi-sector search and matching model of the labour market that illustrates a mechanism through which changes in local industrial composition can cause changes in wages in all sectors of the local economy. We empirically test this model using geographical variation in industrial composition across U.S. metropolitan areas from 1970 to 2000 and find that shifts in industrial composition that favor high-paying industries impact wages in other sectors in a manner that is consistent with the model. The third chapter, co-authored with Christopher Bidner, extends the model developed in chapter two to examine the impact of changes in industrial composition on the relative wages of men and women. We find that men lost representation in high-paying industries relative to women and that these losses can account for a substantial portion of the `unexplained' gender pay gap. All three essays use data from the U.S. decennial Censuses and take U.S. metropolitan areas as local labour markets.
Additional file 3: of
                     Retrozymes are a unique family of non-autonomous retrotransposons with hammerhead ribozymes that propagate in plants through circular RNAs
Creators: name: Cervera, Amelia
name: Denisse Urbina
name: PeĂąa, Marcos De La
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: Hammerhead ribozymes in the genome of Jatropha curcas. A: Sequence alignment of the 30 bona fide HHRs detected in the genome of J. curcas (Bioprojects: PRJNA63485 and PRJNA279873). Only 5 out of the 30 HHRs show identical sequences, whereas the other 25 motifs showed one or more changes. B: Secondary structure of the J. curcas HHRs. Variable positions are indicated within circles (single changes) or boxes (covariations). Conserved tertiary interactions between loops 1 and 2 are shown with dotted lines. (PDF 128 kb)
Additional file 2: Table 2. of Quality assessments for cancer centers in the European Union
Creators: name: Wind, Anke
name: Abinaya Rajan
name: Harten, Wim Van
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Scope and nature of assessments. This table contains information regarding the Scope (patient, research, combination) and Nature (mandatory or voluntary) of the assessments per country. (DOC 49Â kb)
Additional file 8: of
                     Retrozymes are a unique family of non-autonomous retrotransposons with hammerhead ribozymes that propagate in plants through circular RNAs
Creators: name: Cervera, Amelia
name: Denisse Urbina
name: Peña, Marcos De La
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: RT-PCR amplification of negative polarity retrozyme RNAs from J. curcas and F. ananassa. A: RT-PCR experiment carried out with RNA extracts from J. curcas seeds using the direct primer Jc60D for RT to make a cDNA of the minus polarity, and the adjacent primers Jc60D and Jc60fullR (left) or Jc77D and Jc77R (right) for the PCRs (see Additional file 12). B: RT-PCR experiments performed with two different RNA extracts from F. ananassa leaves using the direct primer Fa87D for RT to make a cDNA of the minus polarity, and the adjacent primers Fa87D and Fa85R for PCR (see Additional file 12). PCR products and 100 bp DNA marker were separated by native 5 % PAGEs and stained with ethidium bromide. Controls (RT-) were the same RT-PCR experiments done without adding retrotranscriptase, whereas Controls (PCR) were PCRs done without any template. Schematic representations of a full genomic retrozyme and the positions of the oligos used for RT and PCR experiments are shown below each gel picture. (PDF 649 kb)
Additional file 3: Table 3. of Quality assessments for cancer centers in the European Union
Creators: name: Wind, Anke
name: Abinaya Rajan
name: Harten, Wim Van
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Overview of assessments including details per country. This table contains all assessments included in this study, divided per country and category (patient, research, combination). (DOC 124Â kb)
Anagraphis maculosa Denis 1958
Creators: name: Sajadi, Samin Sadat
name: Wesal, Mohammad Wasil
name: Zamani, Alireza
name: Moradmand, Majid
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Gnaphosidae
Anagraphis
Anagraphis maculosa

description: 25) Anagraphis maculosa Denis, 1958 *
Records: Kandahar: [Kan2], [Kan8].
Distribution: Afghanistan.
References:
Anagraphis maculosa Denis, 1958: 84, fig. 1 (♀).
Anagraphis maculosa: Roewer 1961: 3.
description: Published as part of Sajadi, Samin Sadat, Wesal, Mohammad Wasil, Zamani, Alireza & Moradmand, Majid, 2024, A checklist of the spiders (Arachnida: Araneae) of Afghanistan, pp. 1-50 in Zootaxa 5551 (1) on page 10, DOI: 10.11646/zootaxa.5551.1.1, http://zenodo.org/record/14389939
title: Pol Cant information
title: bulletin de la Police cantonale vaudoise
titleType: Subtitle
title: Pol Cant information
titleType: AlternativeTitle
Creators: name: Police Cantonale Vaudoise (PolCant)-Etat De Vaud
Publisher: name: Police cantonale vaudoise
Year: 2002

description: Bien que la revue, sous ce titre, soit publiée depuis 1994, ce n'est qu'à partir de mars 2002 qu'elle est publiée en ligne.
Prolixus Beard, Fan & Walter 2005
Creators: name: Xu, Yun
name: Zhang, Fei-Ping
name: Zhang, Zhi-Qiang
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Prostigmata
Tenuipalpidae
Prolixus

description: Key to adult females of Prolixus
1. Dorsolateral setae f 2 present; aggenital setae ag present................................................................................................................2
- Dorsolateral setae f 2 absent; setae ag absent..................................................................................................................................3
2. Spermatheca ending in a bulb-shaped vesicle; coxae I–IV with 2, 2, 1, 1 setae, seta 1c present; femora I–IV with 4, 4, 2, 2 setae; genua I–IV with 2, 2, 0, 0 setae..................................................................................................................... P. splendens sp. nov.
- Spermatheca ending in a cylinder-shaped vesicle; coxae I–IV with 1, 2, 1, 1 setae, seta 1c absent; femora I–IV with 4, 4, 2, 1 setae; genua I–IV with 2, 1, 0, 0 setae.......................................................................................... P. forsteri Beard, Fan & Walter
3. Dorsocentral setae e 1 absent; medioventral setae 4a absent; tarsi I–IV with 6+ ω, 6+ ω, 3, 3 setae, (seta tc’’ absent); spermatheca ending in a bulbiform-shaped vesicle......................................................................................... P. setifolius Xu, Huang & Zhang
- Dorsocentral setae e 1 present; medioventral seta 4a present, 4a 1 and 4a 2; tarsi I–IV with 7+ ω, 7+ ω, 4, 4 setae, (seta tc’’ present); spermatheca ending in a cylinder-shaped vesicle..........................................................................................................................4
4. Setae l′ on femora I absent; coxal setae 1c, 3b and 4b present................................................................. P. meyerae Xu & Zhang
- Setae l′ on femora I present; coxal setae 1c, 3b and 4b absent......................................................................................................5
5. Coxal setae 2c present; trochanters I–IV nude; femora I–IV with 4, 3, 2, 2 setae; genus I–IV with 2, 1, 0, 0 setae; setae 3a setiform ......................................................................................................................................... P. corruginus Beard, Fan & Walter
- Coxal setae 2c absent; trochanters I–III with setae v′, v′ and l′ respectively, trochanter IV nude; femora I–IV with 4, 4, 2, 2 setae; genus I–IV with 2, 2, 0, 0 setae; setae 3a flagelliform............................................................... P. nicholasi Xu, Huang & Zhang
description: Published as part of Xu, Yun, Zhang, Fei-Ping & Zhang, Zhi-Qiang, 2018, Description of a new species of Prolixus (Acari: Trombidiformes: Tenuipalpidae from Austroderia splendens (Poaceae) in New Zealand, with discussion of its ontogenetic patterns in chaetotaxy, pp. 158-177 in Zootaxa 4540 (1) on page 176, DOI: 10.11646/zootaxa.4540.1.11, http://zenodo.org/record/2616094
Additional file 4: of
                     Retrozymes are a unique family of non-autonomous retrotransposons with hammerhead ribozymes that propagate in plants through circular RNAs
Creators: name: Cervera, Amelia
name: Denisse Urbina
name: Peña, Marcos De La
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Catalytic functionality of J. curcas hammerhead ribozymes. Schematic representation (top) and autoradiography (bottom) of run-off transcriptions in the presence of [α-32P]-UTP of the positive and negative polarities of a genomic retrozyme fragment from Jatropha curcas. The transcribed RNAs covered approximately from position 574 to position 573 of the circular RNA depicted in Fig. 3a, and were separated by denaturing 5 % PAGE. Quantification of the bands indicated that 60 % of the transcript was processed by the ribozyme. The position of T7 and T3 RNA promoters, primer binding site (PBS), polypurine tract (PPT) and HHR self-cleavage site (arrowhead) are indicated. (PDF 108 kb)
Trends in antibiotic utilization associated with the "Do bugs need drugs?" program in British Columbia
Creators: name: Fuertes, Elaine Isabelle
Publisher: name: University of British Columbia
Year: 2009

description: The misuse and overuse of antibiotics in the treatment of respiratory tract infections contributes to the emergence of antibiotic resistance. “Do Bugs Need Drugs” (DBND) is a multi-faceted community education program which was implemented in British Columbia (BC) in September 2005 to increase appropriate antibiotic use and prevent the spread of infections and resistant organisms. The purpose of this study was to conduct a complete descriptive analysis on the association between DBND and changes in overall, pediatric, drug-specific and indication-specific antibiotic utilization trends in BC. Antibiotic utilization data on all oral solids classified as “antibacterials for systemic use” were obtained from the PharmaNet database for the years 1996 to 2007. These data were linked to the Medical Service Plan database. Following conversion to the defined daily dose, linear regression was used on the data to describe monthly utilization rates in each health service delivery area (HSDA) in BC. Finally, changes in antibiotic utilization trends were compared by level of program implementation to determine whether a pattern exists between differing level of public education and improvements in antibiotic use. The monthly rate of change of all antibiotic utilization rates targeted by the program improved in association with DBND implementation in the Vancouver HSDA. Within the other HSDAs, the monthly rate of change of targeted antibiotic utilization rates improved in all areas with high DBND implementation. Inconsistent results were recorded in areas with low to medium program implementation. Declines in fluoroquinolone and newer macrolide utilization rates were not observed. The findings of this study provide evidence that community education initiatives have the potential to improve antibiotic utilization trends in the long-term. They also demonstrate the importance of a high level of program implementation. However, as the utilization rates of commonly misused antibiotics continue to increase despite the program’s directed efforts, the results of this study suggest that education alone may not be enough to rapidly decrease current antibiotic utilization rates. Policy regulations may be required.
Additional file 3: of
                     miR2118-triggered phased siRNAs are differentially expressed during the panicle development of wild and domesticated African rice species
Creators: name: K. Ta
name: F. Sabot
name: H. Adam
name: Y. Vigouroux
name: S. De Mita
name: A. GhesquiĂ¨Re
name: N. Do
name: P. Gantet
name: S. Jouannic
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Genomic distribution and abundance of O. barthii and O. glaberrima panicle-derived small RNAs on O. sativa nipponbare genome. (a) Distribution and abundance of O. barthii reads vs. O. sativa nipponbare genome MSU7.0. (b) Distribution and abundance of O. glaberrima reads vs. O. sativa nipponbare genome MSU7.0. (PDF 1091 kb)
Isoodon fusciventer Gray 1841
Creators: name: Travouillon, Kenny J.
name: Phillips, Matthew J.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Peramelemorphia
Peramelidae
Isoodon
Isoodon fusciventer

description: Isoodon fusciventer Gray 1841 new stat.
Isoodon obesulus fusciventer Gray 1841
Holotype. BMNH 41.1176, skin and skull.
Type locality. King George Sound, Western Australia, Australia
Distribution. South-west Western Australia.
Remarks. The results of our analysis show that the current subspecies of Isoodon obesulus do not form a monophyletic clade. This was also recovered in the analysis of Westerman et al. (2012), where Isoodon obesulus fusciventer does not form a clade with Isoodon obesulus obesulus suggesting that it is a distinct taxon. As a result, we propose to raise Isoodon obesulus fusciventer to species status, and provide a new diagnosis.
Diagnosis. Isoodon fusciventer differs from all other Isoodon species in having a large StA on M1, with a long crest running anteroposteriorly (this cusp and crest are small and short in all other taxa). Isoodon fusciventer differs form I. obesulus and I. auratus in having a well-developed lingual shelf that extends to the buccal side on P3; no stylar crest on M1; retaining a StC/D on M4. Isoodon fusciventer differs from I. obesulus and I. macrourus in having fused StB and StC on M1 (these cusps are identifiable as distinct cusps in other taxa); posthypocristid is oblique to the tooth row on m1and m2; preentocristid on m4 is absent. Isoodon fusciventer differs from I. auratus in having an enlarged anterior cingulum on M1 which connects to the talon; having P1 as long as P2 (shorter in I. auratus). Isoodon fusciventer differs from I. obesulus in having a preparacrista posterobuccally orientated to connect to a posteriorly located StB on M1; having a ventrally angular alisphenoid tympanic process which terminates anterior to the transverse foramen. Isoodon fusciventer differs from I. macrourus in having P2 and P3 subequal in length (P2 is shorter in I. macrourus); retaining a stylar crest on M2; cristid obliqua on m1 terminates lingual to the protocone but buccal to the midpoint of the tooth width (buccal to the protocone in I. macrourus).
description: Published as part of Travouillon, Kenny J. & Phillips, Matthew J., 2018, Total evidence analysis of the phylogenetic relationships of bandicoots and bilbies (Marsupialia: Peramelemorphia): reassessment of two species and description of a new species, pp. 224-256 in Zootaxa 4378 (2) on page 235, DOI: 10.11646/zootaxa.4378.2.3, http://zenodo.org/record/1169497
The kisspeptin and GPR54 ligand-receptor pair in autocrine and endocrine signalling in cancer
Creators: name: Prentice, Leah Marie
Publisher: name: University of British Columbia
Year: 2009

description: Kisspeptins and their receptor, GPR54, mediate sex hormone release through stimulation of the hypothalamic-pituitary-gonadal axis and have been implicated as metastasis suppressors. Expression of kisspeptin and GPR54 has been associated with less invasive cancers as determined by RNA expression, and a multitude of in vitro studies has consistently shown that overexpression of either ligand or receptor in malignant cell lines results in a less invasive phenotype. We hypothesized that expression of GPR54/kisspeptin in epithelial malignancies is predictive of disease outcome and altering endogenous GPR54 signalling in malignant breast and ovarian epithelial cells could alter their metastatic properties. We have determined by immunohistochemistry that kisspeptin and GPR54 are independent favourable prognostic markers for ovarian carcinoma and are specific for the clear cell cancer subtype; the least characterized of the subtypes. Additionally, loss of GPR54 is associated with poor prognosis in node positive breast cancer patients and is also lost in prostate cancer and testicular germ cell nonseminomas as compared to more benign disease. Moreover, secreted kisspeptin is elevated above physiological levels in the plasma of women with gynaecological cancers, including ovarian cancer. We evaluated GPR54 expression across a panel of breast and ovarian cancer cell lines to create an in vitro model system with which to knockdown GPR54 expression using RNA interference. However, we discovered that endogenous GPR54 was internalized rather than localized to the plasma membrane of these cancer cell lines. Consequently, internal GPR54 was unable to signal through its canonical Gαq pathway. To discover novel genes involved in kisspeptin-GPR54 signalling, we assessed gene expression differences between the Gpr54 and Kiss1 knockout mice as compared to wildtype mice. Our novel candidate list provides insight into physiological signalling in the hypothalamus that can then be applied to epithelial anti-metastatic signalling. Our results also support the sex hormone negative feedback effect on kisspeptin expression as reported in the current literature. In summary, we have confirmed kisspeptin and GPR54 as favourable prognostic markers, are the first to report the intracellular localization of GPR54 in endogenously expressing cancer cell lines, and we have introduced a list of novel genes involved in signalling.
Additional file 10: of
                     Retrozymes are a unique family of non-autonomous retrotransposons with hammerhead ribozymes that propagate in plants through circular RNAs
Creators: name: Cervera, Amelia
name: Denisse Urbina
name: PeĂąa, Marcos De La
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Minimum free energy secondary structure prediction of five plant circRNA retrozymes deduced from the corresponding genomic retrozyme sequences (GenBank entries are indicated below the species names). HHR sequences are shown in purple letters and the self-cleavage site is indicated with an arrow. Numbering starts at the self-cleavage site of the HHR. (PDF 100 kb)
THE ROLE OF WECHAT APPLICATION IN CHINESE FAMILY COMMUNICATION: A CASE STUDY OF CHENGDU CITY, SICHUAN, CHINA
Creators: name: XU, Ru
Publisher: name: Asian Crime and Society Review
Year: 2024
Subjects: Chinese Family Communication
China
Chengdu Province
Communication
Supportive Communication
WeChat Application

description: Asian Crime and Society Review, 11, 2, 44–54
Additional file 8: Table S5. of Molecular essence and endocrine responsiveness of estrogen receptor-negative, progesterone receptor-positive, and HER2-negative breast cancer
Creators: name: Ke-Da Yu
name: Jiang, Yi-Zhou
name: Hao, Shuang
name: Shao, Zhi-Ming
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer

description: Survival benefit from adjuvant endocrine therapy in 55 out of the 64 ERâ  /PgR+/HER2â   cases. (DOC 30 kb)
Asiabadus asiaticus
Creators: name: Sajadi, Samin Sadat
name: Wesal, Mohammad Wasil
name: Zamani, Alireza
name: Moradmand, Majid
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Gnaphosidae
Asiabadus
Asiabadus asiaticus

description: 26) Asiabadus asiaticus (Charitonov, 1946) ^
Records: Balkh: [Bal2]; Faryab: [Far6]; Samangan: [Sam 2]; Sar-i-Pol: [Sar1], [Sar3], [Sar4].
Distribution: Turkmenistan, Afghanistan, Uzbekistan.
References:
Asiabadus hamiger Roewer, 1961: 25, figs 42–44, 76 (♂).
Asiabadus asiaticus: Ovtsharenko & Fet 1980: 446 (synonymy of A. hamiger).— Murphy 2007: 54, figs 440– 441 (♂ ♀).
description: Published as part of Sajadi, Samin Sadat, Wesal, Mohammad Wasil, Zamani, Alireza & Moradmand, Majid, 2024, A checklist of the spiders (Arachnida: Araneae) of Afghanistan, pp. 1-50 in Zootaxa 5551 (1) on page 11, DOI: 10.11646/zootaxa.5551.1.1, http://zenodo.org/record/14389939
MOESM3 of Does the social equitability of community and incentive based conservation interventions in non-OECD countries, affect human well-being? A systematic review protocol
Creators: name: Althor, Glenn
name: McKinnon, Madeleine
name: Cheng, Samantha
name: Klein, Carissa
name: Watson, James
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Cancer

description: Additional file 3. Social equity typologies. Typologies for social equity metrics and common social stratifications.
Berlandina afghana Denis 1958
Creators: name: Sajadi, Samin Sadat
name: Wesal, Mohammad Wasil
name: Zamani, Alireza
name: Moradmand, Majid
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Gnaphosidae
Berlandina
Berlandina afghana

description: 27) Berlandina afghana Denis, 1958 ^
Records: Bamyan: [Bam7], [Bam8], [Bam10]; Kabul: [Kab7]; Kandahar: [Kan2].
Distribution: Iran, Afghanistan, Pakistan.
References:
Berlandina afghana Denis, 1958: 92, fig. 14 (♀).
Berlandina afghana spinitarsis Denis, 1958: 92, fig. 15 (♀).
Berlandina afghana: Marusik et al. 2014: 416 (removed from synonymy of B. plumalis (O. Pickard-Cambridge, 1872), contra Levy 1995: 940, synonymy of B. afghana spinitarsis).
description: Published as part of Sajadi, Samin Sadat, Wesal, Mohammad Wasil, Zamani, Alireza & Moradmand, Majid, 2024, A checklist of the spiders (Arachnida: Araneae) of Afghanistan, pp. 1-50 in Zootaxa 5551 (1) on page 11, DOI: 10.11646/zootaxa.5551.1.1, http://zenodo.org/record/14389939
Berlandina denisi Roewer 1961
Creators: name: Sajadi, Samin Sadat
name: Wesal, Mohammad Wasil
name: Zamani, Alireza
name: Moradmand, Majid
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Gnaphosidae
Berlandina
Berlandina denisi

description: 28) Berlandina denisi Roewer, 1961 *
Records: Helmand: [Hel2].
Distribution: Southern Afghanistan.
References:
Berlandina denisi Roewer, 1961: 10, figs 10–11, 64 (♀).
description: Published as part of Sajadi, Samin Sadat, Wesal, Mohammad Wasil, Zamani, Alireza & Moradmand, Majid, 2024, A checklist of the spiders (Arachnida: Araneae) of Afghanistan, pp. 1-50 in Zootaxa 5551 (1) on page 11, DOI: 10.11646/zootaxa.5551.1.1, http://zenodo.org/record/14389939