cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Do Code Clones Matter?
Creators: name: Juergens, Elmar
name: Deissenboeck, Florian
name: Hummel, Benjamin
name: Wagner, Stefan
Publisher: name: arXiv
Year: 2017
Subjects: subject: Software Engineering (cs.SE)
subject: FOS: Computer and information sciences

description: Code cloning is not only assumed to inflate maintenance costs but also considered defect-prone as inconsistent changes to code duplicates can lead to unexpected behavior. Consequently, the identification of duplicated code, clone detection, has been a very active area of research in recent years. Up to now, however, no substantial investigation of the consequences of code cloning on program correctness has been carried out. To remedy this shortcoming, this paper presents the results of a large-scale case study that was undertaken to find out if inconsistent changes to cloned code can indicate faults. For the analyzed commercial and open source systems we not only found that inconsistent changes to clones are very frequent but also identified a significant number of faults induced by such changes. The clone detection tool used in the case study implements a novel algorithm for the detection of inconsistent clones. It is available as open source to enable other researchers to use it as basis for further investigations.
description: 12 pages, 7 figures in Proc. 31st International Conference on Software Engineering (ICSE '09). IEEE, 2009
Additional file 3 of Does ultrasound education improve anatomy learning? Effects of the Parallel Ultrasound Hands-on (PUSH) undergraduate medicine course
Creators: name: Chen, Wei-Ting
name: Kang, Yi-No
name: Wang, Ting-Cheng
name: Lin, Che-Wei
name: Cheng, Chung-Yi
name: Suk, Fat-Moon
name: Hsu, Chin-Wang
name: Huang, Sha-Ku
name: Huang, Wen-Cheng
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: Medicine
subject: Neuroscience
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 3.
University of Vienna Research Data Management Quick Start Series: Introduction to Research Data Management
Creators: name: Kate, Emily J.
name: Bargmann, Monika
name: Feichtinger, Michael
name: Kalová, Tereza
Publisher: name: Zenodo
Year: 2023

description: This is a one-page quick start guide designed to help researchers at the University of Vienna begin thinking about research data management. These guides are meant to be applicable to any discipline and serve as conversation starters between research support staff and the scholars they assist. This resource was created by the University of Vienna Data Stewards (https://rdm.univie.ac.at/data-stewards-at-the-university/).
Pseudo-Hermitian and PT -symmetric quantum systems with energy-dependent potentials: Bound-state solutions and energy spectra
Creators: name: Schulze-Halberg, Axel
name: Roy, Pinaki
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mathematical Physics (math-ph)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We introduce generalized versions of complex Scarf and Morse-type potentials that con- tain energy-dependent parameters. PT -symmetry and pseudo-hermiticity of the associated quantum systems are discussed, and a modified orthogonality relation and pseudo-norm are constructed. We show that despite energy-dependence, our systems can admit real energy spectra and normalizable solutions of bound-state type.
description: 18 pages
Additional file 2 of Does ultrasound education improve anatomy learning? Effects of the Parallel Ultrasound Hands-on (PUSH) undergraduate medicine course
Creators: name: Chen, Wei-Ting
name: Kang, Yi-No
name: Wang, Ting-Cheng
name: Lin, Che-Wei
name: Cheng, Chung-Yi
name: Suk, Fat-Moon
name: Hsu, Chin-Wang
name: Huang, Sha-Ku
name: Huang, Wen-Cheng
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: Medicine
subject: Neuroscience
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 2.
Stochastic Stirling engine operating in contact with active baths
Creators: name: Zakine, Ruben
name: Solon, Alexandre
name: Gingrich, Todd
name: van Wijland, Frédéric
Publisher: name: arXiv
Year: 2017
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: A Stirling engine made of a colloidal particle in contact with a nonequilibrium bath is considered and analyzed with the tools of stochastic energetics. We model the bath by non Gaussian persistent noise acting on the colloidal particle. Depending on the chosen definition of an isothermal transformation in this nonequilibrium setting, we find that either the energetics of the engine parallels that of its equilibrium counterpart or, in the simplest case, that it ends up being less efficient. Persistence, more than non Gaussian effects, are responsible for this result.
description: 12 pages, 2 figures
title: ADCO, Boursier de Cîteaux : comptes (1489-1493) (11 H 1166), f. 00514
Creators: name: de la Côte-d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2019
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: comptes
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Boursier de Cîteaux : comptes (1489-1493), Archives départementales de la Côte-d'Or, (11 H 1166). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Boursier de Cîteaux : comptes (1489-1493), Archives départementales de la Côte-d'Or, (11 H 1166), f. 00514, in Projet CBMA - Corpus Burgundiae Medii Aevi \[Ressource en ligne\], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
A $QQ\to QQ$ planar doublebox in canonical form
Creators: name: Bianchi, Marco S.
name: Leoni, Matias
Publisher: name: arXiv
Year: 2016
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We consider a planar doublebox with four massive external momenta and two massive internal propagators. We derive the system of differential equations for the relevant master integrals, cast it in canonical form, write it as a $d\log$ form and solve it in terms of iterated integrals up to depth four.
description: 12 pages, 2 figures
University of Vienna Research Data Management Quick Start Series: Data Organization
Creators: name: Kate, Emily J.
name: Bargmann, Monika
name: Feichtinger, Michael
name: Kalová, Tereza
Publisher: name: Zenodo
Year: 2023

description: This is a one-page quick start guide designed to help researchers at the University of Vienna begin thinking about better organize their data and research outputs. These guides are meant to be applicable to any discipline and serve as conversation starters between research support staff and the scholars they assist. This resource was created by the University of Vienna Data Stewards (https://rdm.univie.ac.at/data-stewards-at-the-university/).
Exploring a proximity-coupled Co chain on Pb(110) as a possible Majorana platform
Creators: name: Ruby, Michael
name: Heinrich, Benjamin W.
name: Peng, Yang
name: von Oppen, Felix
name: Franke, Katharina J.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Linear, suspended chains of magnetic atoms proximity coupled to an s-wave superconductor are predicted to host Majorana zero modes at the chain ends in the presence of strong spin-orbit coupling. Specifically, iron (Fe) chains on Pb(110) have been explored as a possible system to exhibit topological superconductivity and host Majorana zero-modes [Nadj-Perge, et al., Science 346, 602 (2014)]. Here, we study chains of the transition metal cobalt (Co) on Pb(110) and check for topological signatures. Using spin-polarized scanning tunneling spectroscopy, we resolve ferromagnetic order in the $d$ bands of the chains. Interestingly, also the subgap Yu-Shiba-Rusinov (YSR) bands carry a spin polarization as was predicted decades ago. Superconducting tips allow us to resolve further details of the YSR bands and in particular resonances at zero energy. We map the spatial distribution of the zero-energy signal and find it delocalized along the chain. Hence, despite of the ferromagnetic coupling within the chains and the strong-spin orbit coupling in the superconductor, we do not find clear evidence of Majorana modes. Simple tight-binding calculations suggest that the spin-orbit-split bands may cross the Fermi level four times which suppresses the zero-energy modes.
description: 5 pages, 5 figures, 13 pages supplementary material
Additional file 1 of Does ultrasound education improve anatomy learning? Effects of the Parallel Ultrasound Hands-on (PUSH) undergraduate medicine course
Creators: name: Chen, Wei-Ting
name: Kang, Yi-No
name: Wang, Ting-Cheng
name: Lin, Che-Wei
name: Cheng, Chung-Yi
name: Suk, Fat-Moon
name: Hsu, Chin-Wang
name: Huang, Sha-Ku
name: Huang, Wen-Cheng
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: Medicine
subject: Neuroscience
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1.
Additional file 1 of A new concept for the production of 11C-labelled radiotracers
Creators: name: Wenz, Jan
name: Arndt, Felix
name: Samnick, Samuel
Publisher: name: figshare
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Inorganic Chemistry
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 1. Additional information for N-methyl-[11C]choline, L-S-methyl-[11C]methionine and [11C]acetate synthesis.
title: ADCO, Sixième cartulaire de Saint-Étienne de Dijon (1662), Cart. 30 (G 133), 441 folios, f. 333
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire
subject: Corpus Burgundiae Medii Aevi

description: Sixième cartulaire de Saint-Étienne de Dijon (1662), Archives départementales de la Côte-d'Or, Cart. 30 (G 133), 441 folios, f. 333, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Sixième cartulaire de Saint-Étienne de Dijon (1662), Archives départementales de la Côte-d'Or, Cart. 30 (G 133), 441 folios, f. 333, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
Additional file 2 of Physicians’ preferences and willingness to pay for artificial intelligence-based assistance tools: a discrete choice experiment among german radiologists
Creators: name: von Wedel, Philip
name: Hagist, Christian
Publisher: name: figshare
Year: 2022
Subjects: subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Science Policy

description: Additional file 2.
Design Principles of Length Control of Cytoskeletal Structures
Creators: name: Mohapatra, Lishibanya
name: Goode, Bruce L.
name: Jelenkovic, Predrag
name: Phillips, Rob
name: Kondev, Jane
Publisher: name: arXiv
Year: 2017
Subjects: subject: Biological Physics (physics.bio-ph)
subject: Subcellular Processes (q-bio.SC)
subject: FOS: Physical sciences
subject: FOS: Biological sciences

description: Cells contain elaborate and interconnected networks of protein polymers which make up the cytoskeleton. The cytoskeleton governs the internal positioning and movement of vesicles and organelles, and controls dynamic changes in cell polarity, shape and movement. Many of these processes require tight control of the size and shape of cytoskeletal structures, which is achieved despite rapid turnover of their molecular components. Here we review mechanisms by which cells control the size of filamentous cytoskeletal structures from the point of view of simple quantitative models that take into account stochastic dynamics of their assembly and disassembly. Significantly, these models make experimentally testable predictions that distinguish different mechanisms of length-control. While the primary focus of this review is on cytoskeletal structures, we believe that the broader principles and mechanisms discussed herein will apply to a range of other subcellular structures whose sizes are tightly controlled and are linked to their functions.
description: 61 pages, 11 figures
Quantum-interference transport through surface layers of indium-doped ZnO nanowires
Creators: name: Chiu, Shao-Pin
name: Lu, Jia G.
name: Lin, Juhn-Jong
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We have fabricated indium-doped ZnO (IZO) nanowires (NWs) and carried out 4-probe electrical-transport measurements at low temperatures. The NWs reveal charge conduction behavior characteristic of disordered metals. In addition to the $T$ dependence of resistance $R$, we have measured the magnetoresistances (MR) in perpendicular and parallel magnetic fields. Our $R(T)$ and MR data in different $T$ intervals are consistent with the theoretical predictions of the one- (1D), two- (2D) or three-dimensional (3D) weak-localization (WL) and the electron-electron interaction (EEI) effects. In particular, a few dimensionality crossovers in the two effects are observed. These crossover phenomena are consistent with the model of a "core-shell-like structure" in individual IZO NWs, where an outer shell of a thickness $t$ ($\simeq$ 15-17 nm) is responsible for the quantum-interference transport. In the WL effect, as the electron dephasing length $L_ϕ$ gradually decreases with increasing $T$ from the lowest measurement temperatures, a 1D-to-2D dimensionality crossover takes place around a characteristic temperature where $L_ϕ$ approximately equals $d$, an effective NW diameter which is slightly smaller than the geometric diameter. As $T$ further increases, a 2D-to-3D dimensionality crossover occurs around another characteristic temperature where $L_ϕ$ approximately equals $t$ ($< d$). In the EEI effect, a 2D-to-3D dimensionality crossover takes place when the thermal diffusion length $L_T$ progressively decreases with increasing $T$ and approaches $t$. However, a crossover to the 1D EEI effect is not seen because $L_T < d$ even at $T$ = 1 K in our IZO NWs. Furthermore, we explain the various inelastic electron scattering processes which govern $L_ϕ$. This work indicates that the surface-related conduction processes are essential to doped semiconductor nanostructures.
description: 14 pages, 7 figures, 3 tables
A Self-adaptive and Secure Approach to Share Network Trace Data
Creators: name: Xenakis, Antonios
name: Nourin, Sabrina Mamtaz
name: Chen, Zhiyuan
name: Karabatis, George
name: Amarsingh, Jhancy
Publisher: name: ACM
Year: 2023

description: A large volume of network trace data are collected by the government and public and private organizations and can be analyzed for various purposes such as resolving network problems, improving network performance, and understanding user behavior. However, most organizations are reluctant to share their data with any external experts for analysis, because they contain sensitive information deemed proprietary to the organization, thus raising privacy concerns. Even if the payload of network packets is not shared, header data may disclose sensitive information that adversaries can exploit to perform unauthorized actions. So network trace data need to be anonymized before being shared. Most of the existing anonymization tools have two major shortcomings: (1) they cannot provide provable protection, and (2) their performance relies on setting the right parameter values such as the degree of privacy protection and the features that should be anonymized, but there is little assistance for a user to optimally set these parameters. This article proposes a self-adaptive and secure approach to anonymize network trace data and provides provable protection and automatic optimal settings of parameters. A comparison of the proposed approach with existing anonymization tools via experimentation demonstrated that the proposed method outperforms the existing anonymization techniques.
Experimental verification of orbital engineering at the atomic scale: charge transfer and symmetry breaking in nickelate heterostructures
Creators: name: Phillips, Patrick J.
name: Longo, Paolo
name: Georgescu, Alexandru B.
name: Okunishi, Eiji
name: Rui, Xue
name: Disa, Ankit S.
name: Walker, Fred
name: Ismail-Beigi, Sohrab
name: Ahn, Charles H.
name: Klie, Robert F.
Publisher: name: arXiv
Year: 2016
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Epitaxial strain, layer confinement and inversion symmetry breaking have emerged as powerful new approaches to control the electronic and atomic-scale structural properties in complex metal oxides. Nickelate heterostructures, based on RENiO$_3$, where RE is a trivalent rare-earth cation, have been shown to be relevant model systems since the orbital occupancy, degeneracy, and, consequently, the electronic/magnetic properties can be altered as a function of epitaxial strain, layer thickness and superlattice structure. One such recent example is the tri-component LaTiO$_3$-LaNiO$_3$-LaAlO$_3$ superlattice, which exhibits charge transfer and orbital polarization as the result of its interfacial dipole electric field. A crucial step towards control of these parameters for future electronic and magnetic device applications is to develop an understanding of both the magnitude and range of the octahedral network's response towards interfacial strain and electric fields. An approach that provides atomic-scale resolution and sensitivity towards the local octahedral distortions and orbital occupancy is therefore required. Here, we employ atomic-resolution imaging coupled with electron spectroscopies and first principles theory to examine the role of interfacial charge transfer and symmetry breaking in a tricomponent nickelate superlattice system. We find that nearly complete charge transfer occurs between the LaTiO$_3$ and LaNiO$_3$ layers, resulting in a Ni$^{2+}$ valence state. We further demonstrate that this charge transfer is highly localized with a range of about 1 unit cell, within the LaNiO$_3$ layers. The results presented here provide important feedback to synthesis efforts aimed at stabilizing new electronic phases that are not accessible by conventional bulk or epitaxial film approaches.
Additional file 1 of Physicians’ preferences and willingness to pay for artificial intelligence-based assistance tools: a discrete choice experiment among german radiologists
Creators: name: von Wedel, Philip
name: Hagist, Christian
Publisher: name: figshare
Year: 2022
Subjects: subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Science Policy

description: Additional file 1.
Quality of life and care needs in women with estrogen positive metastatic breast cancer: a qualitative study
Creators: name: Mortensen, Gitte Lee
name: Madsen, Ivan Bredbjerg
name: Krogsgaard, Randi
name: Ejlertsen, Bent
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy

description: Background: In recent years, the prognosis of metastatic breast cancer (MBC) has improved with more effective therapies applicable to a wider range of patients. To many patients, a MBC diagnosis thus initiates a prolonged course of illness and treatment. This qualitative study aimed to explore the long-term health-related quality of life (HRQoL) and support needs in MBC patients of all ages in the Danish context. Material and methods: Eighteen MBC patients participated in five qualitative focus group interviews that were analyzed using content analysis and a constructivist approach. Results: The participants described how MBC severely reduced their physical and psychosocial functioning and required a constant adaptation of their quality of life (QoL) standards in relation to their changing life situation and disease progression. Overall, they felt medically well-treated but lacked a multidisciplinary approach to care including psychological support, in particular, but also manual physiotherapy, health care coordination and social counseling. The participants called for continuity of care with the same health care professionals as this facilitated communication and flexibility in planning treatment and controls. They requested a reduction of precious time spend on treatment to enable them to focus on their most meaningful relations and activities. Conclusion: With the MBC diagnosis, the focus of treatment switches from disease eradication to prolonging survival, alleviating symptoms and improving QoL. To patients, MBC marks a shift in expectations from quantity to quality of life and a perpetual adaptation of their QoL standards. To sustain patients’ HRQoL, it is important that along with improvements in life-prolonging treatment, comprehensive care also supports their main psycho-social needs. These patients needed support in maintaining normality and role functioning enabling them to focus on living, not merely surviving, through this prolonged disease phase.
Shape-dependence of the barrier for skyrmions on a two-lane racetrack
Creators: name: Müller, Jan
Publisher: name: arXiv
Year: 2017
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Single magnetic skyrmions are localized whirls in the magnetization with an integer winding number. They have been observed on nano-meter scales up to room temperature in multilayer structures. Due to their small size, topological winding number, and their ability to be manipulated by extremely tiny forces, they are often called interesting candidates for future memory devices. The two-lane racetrack has to exhibit two lanes that are separated by an energy barrier. The information is then encoded in the position of a skyrmion which is located in one of these close-by lanes. The artificial barrier between the lanes can be created by an additional nanostrip on top of the track. Here we study the dependence of the potential barrier on the shape of the additional nanostrip, calculating the potentials for a rectangular, triangular, and parabolic cross section, as well as interpolations between the first two. We find that a narrow barrier is always repulsive and that the height of the potential strongly depends on the shape of the nanostrip, whereas the shape of the potential is more universal. We finally show that the shape-dependence is redundant for possible applications.
description: 6 pages, 4 figures, SPIE Conference Proceeding
Additional file 3 of Liver X receptor-agonist treatment rescues degeneration in a Drosophila model of hereditary spastic paraplegia
Creators: name: Byrne, Dwayne J.
name: Garcia-Pardo, M. Elena
name: Cole, Nelson B.
name: Batnasan, Belguun
name: Heneghan, Sophia
name: Sohail, Anood
name: Blackstone, Craig
name: O’Sullivan, Niamh C.
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Pharmacology
subject: Developmental Biology
subject: Computational Biology

description: Additional file 3: Supplementary Table 1. List of proteins identified as likely interactors of human ARL6IP1. This list of proteins was generated from the proteins pulled down with ARL6IP1-FLAG. Those included in this list had a spectral intensity abundance ratio (Arl6IP1-FLAG:Control) greater than 1.2 and were not identified in the CRAPome as non-specific binding partners within U-2 OS cells incubated with FLAG M2 affinity beads [48]. GO analysis was conducted to determine the localisation of ARL6IP1 binding partners and shown are proteins identified to have significant enrichment within ER, ER membrane or ER tubular network as determined by D = DAVID, P = Panther, FA = FuncAssociate, E = Enrichr. Proteins in bold were validated as ARL6IP1 interactors by independent co-immunoprecipitation and co-localisation experiments in this study. PSM: peptide spectrum matches.
Characterizing the ionospheric current pattern response to southward and northward IMF turnings with dynamical SuperMAG correlation networks
Creators: name: Dods, J.
name: Chapman, S. C.
name: Gjerloev, J. W.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Space Physics (physics.space-ph)
subject: FOS: Physical sciences

description: We characterize the response of the quiet time (no substorms or storms) large-scale ionospheric transient equivalent currents to north-south and south-north IMF turnings by using a dynamical network of ground-based magnetometers. Canonical correlation between all pairs of SuperMAG magnetometer stations in the Northern Hemisphere (magnetic latitude (MLAT) 50-82$^{\circ}$) is used to establish the extent of near-simultaneous magnetic response between regions of magnetic local time-MLAT. Parameters and maps that describe spatial-temporal correlation are used to characterize the system and its response to the turnings aggregated over several hundred events. We find that regions that experience large increases in correlation post turning coincide with typical locations of a two-cell convection system and are influenced by the interplanetary magnetic field $\mathit{B}_{y}$. The time between the turnings reaching the magnetopause and a network response is found to be $\sim$8-10 min and correlation in the dayside occurs 2-8 min before that in the nightside.
The relation between anxious personality characteristics and fear generalization in healthy subjects: a meta-analytic review
Creators: name: Sep, Milou
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Psychology
subject: FOS: Psychology
subject: Social and Behavioral Sciences
subject: Medicine and Health Sciences
subject: Psychiatry and Psychology

description: Pre-registration (PROSPERO 2018 CRD42018090886) http://www.crd.york.ac.uk/PROSPERO/display_record.php?ID=CRD42018090886
Additional file 1 of Relationship between caffeine intake and infertility: a systematic review of controlled clinical studies
Creators: name: Bu, Fan-Long
name: Feng, Xue
name: Yang, Xiao-Ying
name: Ren, Jun
name: Cao, Hui-Juan
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Science Policy

description: Additional file 1. Search strategy in Pubmed. doc.
Additional file 2 of Liver X receptor-agonist treatment rescues degeneration in a Drosophila model of hereditary spastic paraplegia
Creators: name: Byrne, Dwayne J.
name: Garcia-Pardo, M. Elena
name: Cole, Nelson B.
name: Batnasan, Belguun
name: Heneghan, Sophia
name: Sohail, Anood
name: Blackstone, Craig
name: O’Sullivan, Niamh C.
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Pharmacology
subject: Developmental Biology
subject: Computational Biology

description: Additional file 2: Supplementary Figs. 1–6.
title: ADCO, Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome IX, Cart. 193 (11 H 78), f. 0045r
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome IX, Archives départementales de la Côte-d'Or, Cart. 193 (11 H 78), f. 0045r, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome IX, Archives départementales de la Côte-d'Or, Cart. 193 (11 H 78), f. 0045r, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Additional file 3 of Use of novel lab assays to examine the effect of pyrethroid-treated bed nets on blood-feeding success and longevity of highly insecticide-resistant Anopheles gambiae s.l. mosquitoes
Creators: name: Barreaux, Priscille
name: Koella, Jacob C.
name: N’Guessan, Raphael
name: Thomas, Matthew B.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3: Dataset 2. Variable exposure via individual feeding choice.
Additional file 1 of Liver X receptor-agonist treatment rescues degeneration in a Drosophila model of hereditary spastic paraplegia
Creators: name: Byrne, Dwayne J.
name: Garcia-Pardo, M. Elena
name: Cole, Nelson B.
name: Batnasan, Belguun
name: Heneghan, Sophia
name: Sohail, Anood
name: Blackstone, Craig
name: O’Sullivan, Niamh C.
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Pharmacology
subject: Developmental Biology
subject: Computational Biology

description: Additional file 1: Donor DNA sequences used for CRISPR-Cas9 gene editing.
Spiral Arms, Infall, and Misalignment of the Circumbinary Disk from the Circumstellar Disks in the Protostellar Binary System L1551 NE
Creators: name: Takakuwa, Shigehisa
name: Saigo, Kazuya
name: Matsumoto, Tomoaki
name: Saito, Masao
name: Lim, Jeremy
name: Hanawa, Tomoyuki
name: Yen, Hsi-Wei
name: Ho, Paul T. P.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We report the ALMA Cycle 2 observations of the Class I binary protostellar system L1551 NE in the 0.9-mm continuum, C18O (3-2), 13CO (3-2), SO (7_8-6_7), and the CS (7-6) emission. At 0.18" (= 25 AU) resolution, ~4-times higher than that of our Cycle 0 observations, the circumbinary disk as seen in the 0.9-mm emission is shown to be comprised of a northern and a southern spiral arm, with the southern arm connecting to the circumstellar disk around Source B. The western parts of the spiral arms are brighter than the eastern parts, suggesting the presence of an m=1 spiral mode. In the C18O emission, the infall gas motions in the inter-arm regions and the outward gas motions in the arms are identified. These observed features are well reproduced with our numerical simulations, where gravitational torques from the binary system impart angular momenta to the spiral-arm regions and extract angular momenta from the inter-arm regions. Chemical differentiation of the circumbinary disk is seen in the four molecular species. Our Cycle 2 observations have also resolved the circumstellar disks around the individual protostars, and the beam-deconvolved sizes are 0.29" X 0.19" (= 40 X 26 AU) (P.A. = 144 deg) and 0.26" X 0.20" (= 36 X 27 AU) (P.A. = 147 deg) for Sources A and B, respectively. The position and inclination angles of these circumstellar disks are misaligned with that of the circumbinary disk. The C18O emission traces the Keplerian rotation of the misaligned disk around Source A.
description: 19 pages, 10 figures
Additional file 2 of Use of novel lab assays to examine the effect of pyrethroid-treated bed nets on blood-feeding success and longevity of highly insecticide-resistant Anopheles gambiae s.l. mosquitoes
Creators: name: Barreaux, Priscille
name: Koella, Jacob C.
name: N’Guessan, Raphael
name: Thomas, Matthew B.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2: Dataset 1. Forced exposure in modified WHO tube assay.
Additional file 1 of Use of novel lab assays to examine the effect of pyrethroid-treated bed nets on blood-feeding success and longevity of highly insecticide-resistant Anopheles gambiae s.l. mosquitoes
Creators: name: Barreaux, Priscille
name: Koella, Jacob C.
name: N’Guessan, Raphael
name: Thomas, Matthew B.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Table A. Sample size used for each experimental blocks. Experiment a: forced exposure in modified WHO tubes; Experiment b: variable exposure via individual feeding choice.
Typical-medium, multiple-scattering theory for disordered systems with Anderson localization
Creators: name: Terletska, H.
name: Zhang, Y.
name: Chioncel, L.
name: Vollhardt, D.
name: Jarrell, M.
Publisher: name: arXiv
Year: 2016
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: The typical medium dynamical cluster approximation (TMDCA) is reformulated in the language of multiple scattering theory to make possible first principles calculations of the electronic structure of substitutionally disordered alloys including the effect of Anderson localization. The TMDCA allows for a systematic inclusion of non-local multi-site correlations and at same time provides an order parameter, the typical density of states, for the Anderson localization transition. The relation between the dynamical cluster approximation and the multiple scattering theory is analyzed, and is illustrated for a tight-binding model.
description: 15 pages, 11 figures
Additional file 4 of Transcriptional, epigenetic and metabolic signatures in cardiometabolic syndrome defined by extreme phenotypes
Creators: name: Seyres, Denis
name: Cabassi, Alessandra
name: Lambourne, John J.
name: Burden, Frances
name: Farrow, Samantha
name: McKinney, Harriet
name: Batista, Joana
name: Kempster, Carly
name: Pietzner, Maik
name: Slingsby, Oliver
name: Cao, Thong Huy
name: Quinn, Paulene A.
name: Stefanucci, Luca
name: Sims, Matthew C.
name: Rehnstrom, Karola
name: Adams, Claire L.
name: Frary, Amy
name: Ergüener, Bekir
name: Kreuzhuber, Roman
name: Mocciaro, Gabriele
name: D’Amore, Simona
name: Koulman, Albert
name: Grassi, Luigi
name: Griffin, Julian L.
name: Ng, Leong Loke
name: Park, Adrian
name: Savage, David B.
name: Langenberg, Claudia
name: Bock, Christoph
name: Downes, Kate
name: Wareham, Nicholas J.
name: Allison, Michael
name: Vacca, Michele
name: Kirk, Paul D. W.
name: Frontini, Mattia
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Computational Biology

description: Additional file 4: Fig. S4. Related to Figure 3—Multi-omic signatures of extreme phenotype groups and their use in prediction. A. Plots showing individuals ranked by their predicted probability of belonging to the obese group. As in Figure 3C, but for the Methylation (monocytes), RNA-Seq (monocytes), Metabolites, and ChIP-Seq (monocytes) data layers. B. Multi-omic model trained using lipodystrophy patients often predicts obese individuals to belong to the lipodystrophy group. As in Figure 3C (final plot), but training the multi-layer model using the Lipodystrophy and Lean-BD groups (rather than the Obese and Lean-BD groups). Using this model, Obese individuals were often predicted as belonging to the Lipodystrophy group.
Stability Analysis of Einstein Universe in $f(\mathcal{G},T)$ Gravity
Creators: name: Sharif, M.
name: Ikram, Ayesha
Publisher: name: arXiv
Year: 2017
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: This paper explores stability of the Einstein universe against linear homogeneous perturbations in the background of $f(\mathcal{G},T)$ gravity. We construct static as well as perturbed field equations and investigate stability regions for the specific forms of generic function $f(\mathcal{G},T)$ corresponding to conserved as well as non-conserved energy-momentum tensor. We use the equation of state parameter to parameterize the stability regions. The graphical analysis shows that the suitable choice of parameters lead to stable regions of the Einstein universe.
description: 19 pages, 8 figures, to appear in IJMPD
Additional file 1 of Considering intermittent fasting among Saudis: insights into practices
Creators: name: Alnasser, Aroub
name: Almutairi, Mashael
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1.
Provision of data from the clinical database and of biological material from the tumor bank of the Danish Breast Cancer Cooperative Group 2008–2017
Creators: name: Mouridsen, Henning
name: Christiansen, Peer
name: Maj-Britt Jensen
name: Anne-Vibeke Laenkholm
name: Flyger, Henrik
name: Offersen, Birgitte
name: Vejborg, Ilse
name: Ejlertsen, Bent
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Pharmacology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Plant Biology
subject: Computational Biology

description: Provision of data from the clinical database and of biological material from the tumor bank of the Danish Breast Cancer Cooperative Group 2008–2017
The Ciona17 Dataset for Semantic Segmentation of Invasive Species in a Marine Aquaculture Environment
Creators: name: Galloway, Angus
name: Taylor, Graham W.
name: Ramsay, Aaron
name: Moussa, Medhat
Publisher: name: arXiv
Year: 2017
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: An original dataset for semantic segmentation, Ciona17, is introduced, which to the best of the authors' knowledge, is the first dataset of its kind with pixel-level annotations pertaining to invasive species in a marine environment. Diverse outdoor illumination, a range of object shapes, colour, and severe occlusion provide a significant real world challenge for the computer vision community. An accompanying ground-truthing tool for superpixel labeling, Truth and Crop, is also introduced. Finally, we provide a baseline using a variant of Fully Convolutional Networks, and report results in terms of the standard mean intersection over union (mIoU) metric.
description: Submitted to the Conference on Computer and Robot Vision (CRV) 2017
title: ADCO, Septième cartulaire de Saint-Étienne de Dijon (1661-1665), Cart. 29 (G 134), 996 folios, f. 0023
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Chartes de la Bourgogne du Moyen Âge
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: LaMOP

description: Septième cartulaire de Saint-Étienne de Dijon (1661-1665), Archives départementales de la Côte-d'Or, Cart. 29 (G 134), 996 folios, f. 0023, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Septième cartulaire de Saint-Étienne de Dijon (1661-1665), Archives départementales de la Côte-d'Or, Cart. 29 (G 134), 996 folios, f. 0023, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
Outskirts of Nearby Disk Galaxies: Star Formation and Stellar Populations
Creators: name: Elmegreen, Bruce G.
name: Hunter, Deidre A.
Publisher: name: arXiv
Year: 2016
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: The properties and star formation processes in the far-outer disks of nearby spiral and dwarf irregular galaxies are reviewed. The origin and structure of the generally exponential profiles in stellar disks is considered to result from cosmological infall combined with a non-linear star formation law and a history of stellar migration and scattering from spirals, bars, and random collisions with interstellar clouds. In both spirals and dwarfs, the far-outer disks tend to be older, redder and thicker than the inner disks, with the overall radial profiles suggesting inside-out star formation plus stellar scattering in spirals, and outside-in star formation with a possible contribution from scattering in dwarfs. Dwarf irregulars and the far-outer parts of spirals both tend to be gas dominated, and the gas radial profile is often non-exponential although still decreasing with radius. The ratio of H-alpha to far-UV flux tends to decrease with lower surface brightness in these regions, suggesting either a change in the initial stellar mass function or the sampling of that function, or a possible loss of H-alpha photons.
description: 20 pages, 8 figures, Invited review, Book chapter in "Outskirts of Galaxies", Eds. J. H. Knapen, J. C. Lee and A. Gil de Paz, Astrophysics and Space Science Library, Springer, in press
The clinical database and implementation of treatment guidelines by the Danish Breast Cancer Cooperative Group in 2007–2016
Creators: name: Maj-Britt Jensen
name: Anne-Vibeke Laenkholm
name: Offersen, Birgitte V.
name: Christiansen, Peer
name: Kroman, Niels
name: Mouridsen, Henning T.
name: Ejlertsen, Bent
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Plant Biology

description: Background: Since 40 years, Danish Breast Cancer Cooperative Group (DBCG) has provided comprehensive guidelines for diagnosis and treatment of breast cancer. This population-based analysis aimed to describe the plurality of modifications introduced over the past 10 years in the national Danish guidelines for the management of early breast cancer. By use of the clinical DBCG database we analyze the effectiveness of the implementation of guideline revisions in Denmark. Methods: From the DBCG guidelines we extracted modifications introduced in 2007–2016 and selected examples regarding surgery, radiotherapy (RT) and systemic treatment. We assessed introduction of modifications from release on the DBCG webpage to change in clinical practice using the DBCG clinical database. Results: Over a 10-year period data from 48,772 patients newly diagnosed with malignant breast tumors were entered into DBCG’s clinical database and 42,197 of these patients were diagnosed with an invasive carcinoma following breast conserving surgery (BCS) or mastectomy. More than twenty modifications were introduced in the guidelines. Implementations, based on prospectively collected data, varied widely; exemplified with around one quarter of the patients not treated according to a specific guideline within one year from the introduction, to an almost immediate full implantation. Conclusions: Modifications of the DBCG guidelines were generally well implemented, but the time to full implementation varied from less than one year up to around five years. Our data is registry based and does not allow a closer analysis of the causes for delay in implementation of guideline modifications.