Additional file 1 of Mapping global zoonotic niche and interregional transmission risk of monkeypox: a retrospective observational study
Creators: name: Sun, Yan-Qun
name: Chen, Jin-Jin
name: Liu, Mei-Chen
name: Zhang, Yuan-Yuan
name: Wang, Tao
name: Che, Tian-Le
name: Li, Ting-Ting
name: Liu, Yan-Ning
name: Teng, Ai-Ying
name: Wu, Bing-Zheng
name: Hong, Xue-Geng
name: Xu, Qiang
name: Lv, Chen-Long
name: Jiang, Bao-Gui
name: Liu, Wei
name: Fang, Li-Qun
Publisher: name: figshare
Year: 2023
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Additional file 1: Text S1. Phylodynamic analyses of MPXV. Text S2. The procedure of estimation of adequate reproductive number (Rt). Text S3. BRT modeling analyses. Text S4. The risk of international spread for MPXV and metapopulation model. Text S5. Demographic characteristics and spatiotemporal changes of MPXV infections. Table S1. Literature search syntax of monkeypox. Table S2. Information of MPXV infections from grey literature. Table S3. Guideline for inclusion and exclusion of literature of MPXV infections. Table S4. Data extracted for literature included in the study. Table S5. Criteria of human and animal infections with MPXV. Table S6. Genome sequences used in the phylogenetic analyses. Table S7. Source used to analysis the effective reproductive number for MPXV from 1990 to 2020. Table S8. Definition of MPXV infection in potential reservoir hosts. Table S9. Information of data source in the modeling analysis. Table S10. Description of 45 potential influencing factors used in the modelling efforts. Table S11. Ecological factors potentially associated with the MPXV zoonotic transmission used in the modelling analysis. Table S12. Number and resource of occurrence data for animals extracted from Global Biodiversity Information Facility (GBIF). Table S13. Source of data to describe the yearly case number in infected regions. Table S14. Source of data to describe the monthly case number in infected regions. Table S15. Epidemiological features of global human monkeypox patients recorded in 2022. Table S16. Case numbers of MPXV infections in humans by country and year. Table S17. Cases of MPXV infections in animals by country and year. Table S18. Locations of detection of MPXV in animals with transmission to humans. Table S19. Locations with MPXV infection in humans and animals used to build BRT models. Table S20. Mean (95% percentiles) relative contributions of variables (RC≥3%) and mean AUCs (95% percentiles) of five BRT models in this study. Table S21. Model-Predicted populations and areas at risk of MPXV infections in Africa. Table S22. Top 10 countries with suitable habitats for MPXV (ranked by population). Table S23. Top 10 countries with suitable habitats for MPXV (ranked by area). Table S24. The imported risk of MPXV caused by flight from endemic countries. Table S25. The imported risk of MPXV caused by flight from epidemic countries. Table S26. Country or region abbreviations used throughout the article. Figure S1. Timeline of MPXV cases from 1970 to 2022. Figure S2. The number of MPXV human infections by periods and countries. Figure S3. The locations of reported MPXV infections in animals and zoonotic transmission to human. Figure S4. The effective reproduction number (Rt) of monkeypox in human-to-human transmission. Figure S5. Correlation matrix of variables for Cricetomys gambianus. Figure S6. Correlation matrix of variables for Funisciurus spp. Figure S7. Correlation matrix of variables for Graphiurus crassicaudatus. Figure S8. Correlation matrix of variables for Graphiurus lorraineus. Figure S9. Correlation matrix of variables for MPXV. Figure S10. The relative contribution and response curve of BRT models for Cricetomys gambianus. Figure S11. The relative contribution and response curve of BRT models for Funisciurus spp. Figure S12. The relative contribution and response curve of BRT models for Graphiurus crassicaudatus. Figure S13. The relative contribution and response curve of BRT models for Graphiurus lorraineus. Figure S14. The relative contribution and response curve of BRT models for MPXV. Figure S15. Global environmental suitability of MPXV. Figure S16. The chord graph of interregional risk of MPXV from endemic countries (A) and main current epidemic countries (B) caused by flight. Text S6. Reference.