cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
The CINSARC signature predicts clinical outcome in multiple cancer types
Creators: name: Lesluyes, Tom
name: Delespaul, Lucile
name: Pérot, Gaëlle
name: Jean-Michel Coindre
name: Guellec, Sophie Le
name: Chibon, Frédéric
Publisher: name: F1000 Research Limited
Year: 2018

description: The CINSARC signature is a prognostic factor for soft-tissue sarcoma aggressiveness with a better accuracy compared to the reference grading system. Since this signature reflects chromosomal instability, a global cancer hallmark, it also predicted patient survivals in breast cancers and lymphomas. We consequently initiated experiments evaluating the prognostic value of CINSARC in a wide spectrum of cancer types. In addition, we were interested in a better clinical applicability since it was originally established on fresh frozen tissues analyzed by microarrays, whereas pathologists mainly use formalin-fixed paraffin-embedded (FFPE) tissues and RNA sequencing became a routine technique in many laboratories to identify genetic alterations.

Among all tested signatures, CINSARC was the most enriched in prognostic genes. It also predicts patient survivals in 33 independent published studies, covering 17 different cancer types. Across different expression technologies (microarrays and RNA-seq) and material supports (fresh frozen and FFPE tissues), significant agreement tests were obtained so risk-group classifications were globally similar (>80%). Though these two technologies achieved with significant survival studies, a slightly better accuracy is obtained using RNA-seq. RNA from FFPE blocks could be processed depending on their degradation profiles for which we established a quality threshold.
Erschliessung in Zeitungsdigitalisierungsprojekten. Qualitative Fallstudie zu den Kulturportalen ANNO, Thun-Chronik und TROVE (Österreich, Schweiz, Australien).
Creators: name: Altermatt, Sandra
Publisher: name: Zenodo
Year: 2018
Subjects: Digitization projects
newspapers
description metadata
digital curating
web 2.0
GLAM

description: Die Masterarbeit Erschliessung in Zeitungsdigitalisierungsprojekten untersucht die
 Fragestellung: Wie sollen Digitalisate erschlossen und mit welchen Metadaten versehen
 werden, um ein umfangreiches und vielseitiges Retrieval- und Praesentationsangebot
 anzubieten? Mittels einer Erhebung (Dokumentenanalyse, Nachfrage bei GLAMs) wurde die
 Erschliessungspraxis anhand folgender GLAMs exemplarisch untersucht: ANNO (AustriaN
 Newspapers Online) der Oesterreichischen Nationalbibliothek (OENB), Thun - Chronik des
 Stadtarchivs Thun (SAT) und TROVE (engl. Fundgrube) der National Library of Australia
 (NLA).
description: Masterarbeit für Master of Advanced Studies in Archival, Library and Information Science (MAS ALIS) der Universitäten Bern und Lausanne.
Stenoheriades (Stenoheriades) levantica Muller 2014
Creators: name: Boustani, Mira
name: Rasmont, Pierre
name: Dathe, Holger H.
name: Ghisbain, Guillaume
name: Kasparek, Max
name: Michez, Denis
name: Müller, Andreas
name: Pauly, Alain
name: Risch, Stefan
name: Straka, Jakub
name: Terzo, Michael
name: Achter, Xavier Van
name: Wood, Thomas J.
name: Nemer, Nabil
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Megachilidae
Stenoheriades
Stenoheriades levantica

description: Stenoheriades (Stenoheriades) levantica Müller, 2014
Distribution: LEVANT (Müller 2021).
Literature. Male reported from Lebanon by Mavromoustakis (1955) was assigned to Chelostoma coelostomum Benoist, 1935. However, these records have been reassigned to Stenoheriades levantica (Müller & Trunz 2014): S. Lebanon, Djezzine [Jezzine], 2.VI.1953, 6♂, 5♀, det. & leg. Mavromoustakis G.A.
Material examined. Mount Lebanon: Maaser Al Chouf, 1143 m, 29.V.2019, 1♂, leg. Boustani M.
N. Lebanon: Hadath El Jebbe, Al Fouar, 1529 m, 31.V.2019, 1♂, leg. Boustani M., all coll. MBOU.
Flower record. Asteraceae: Anthemis pauciloba.
Genus Hoplitis Klug, 1807
16 species.
Most species seem to have preferences for Fabaceae and Boraginaceae as observed by Sedivy et al. 2013, but there are also a few records from Asteraceae and Campanulaceae.
description: Published as part of Boustani, Mira, Rasmont, Pierre, Dathe, Holger H., Ghisbain, Guillaume, Kasparek, Max, Michez, Denis, Müller, Andreas, Pauly, Alain, Risch, Stefan, Straka, Jakub, Terzo, Michael, Achter, Xavier Van, Wood, Thomas J. & Nemer, Nabil, 2021, The bees of Lebanon (Hymenoptera: Apoidea: Anthophila), pp. 1-146 in Zootaxa 4976 (1) on pages 52-53, DOI: 10.11646/zootaxa.4976.1.1, http://zenodo.org/record/4819018
Digitale Orte Niedersachsen - Forschungsnahe Dienste (Forschungsdatenmanagement), UB Hildesheim in der digitalen Welt. FDM in Kooperation in Nds.
Creators: name: Strauch-Davey, Annette
Publisher: name: Zenodo
Year: 2021
Subjects: FDM
RDM
Research Data Management
Digitaler Ort
Digitalisierung
Forschungsnahe Dienste
Digitalisierung Niedersachsen

description: Mit der Auszeichnung als Digitaler Ort Niedersachsen werden besonders Initiativen geehrt, die sich mit ihrem Engagement im Kontext der Digitalisierung besonders verdient machen und so den digitalen Wandel in Niedersachsen aktiv mitgestalten. Anfang Mai 2021 hatte sich "die FDM-Stelle der UB Hildesheim" (AS-D) deshalb für die Auszeichnung "Digitale Orte" beworben.

 Wichtig dabei war ihr das Projekt kommt aus Niedersachsen. Informationen zu dem eigenen Weg der fortschreitenden Digitalisierung für andere zu geben
 Die Jury hatte dann Anfang Juli 2021 die Universitätsbibliothek Hildesheim als Digitalen Ort ausgewählt.
 Die Auszeichnung wird im September 2021 vor Ort vorgenommen, in Abstimmung mit UB-Direktion und HSL.

 Näheres wird auf den Webseiten der SUH bekanntgegeben.

 Das sind die "Digitalen Orte Niedersachsen" aus der Wissenschaft:

 https://digitalagentur-niedersachsen.de/digitale-orte/?tx_category=wissenschaft

 Informationen zu den "Digitalen Orten Niedersachsen" finden Sie auf der Seite der Digitalagentur Niedersachsen unter dem folgenden Link: https://digitalagentur-niedersachsen.de/digitale-orte/ Die ausgezeichneten „Digitalen Orte Niedersachsen“ werden öffentlichkeitswirksam mit ihrem Logo auf der Webseite der Digitalagentur Niedersachsen dargestellt. Jeder ausgezeichnete Ort erhält darüber hinaus ein Logo, eine Urkunde sowie eine Plakette. Ausgewählten Initiativen/Projekten wird die Auszeichnung persönlich vom Staatssekretär für Digitalisierung oder vom Minister im Niedersächsischen Ministerium für Wirtschaft, Arbeit, Verkehr und Digitalisierung übergeben. Diese ausgewählten Digitalen Orte erhalten zudem einen eigenen Beitrag auf der Webseite sowie die Chance auf die Nominierung zum „Digitalen Ort des Jahres“, der im Rahmen der Digitalkonferenz TECHTIDE des Landes Niedersachsen von den Besucherinnen und Besuchern gewählt wird.
Additional file 2 of Implementation fidelity and acceptability of an intervention to improve vaccination uptake and child health in rural India: a mixed methods evaluation of a pilot cluster randomized controlled trial
Creators: name: Pérez, Myriam Cielo
name: Chandra, Dinesh
name: Koné, Georges
name: Rohit Singh
name: Ridde, Valery
name: Sylvestre, Marie-Pierre
name: Aaditeshwar Seth
name: Johri, Mira
Publisher: name: figshare
Year: 2020
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 2. Data collection tool to evaluate intervention fidelity.
Hoplitis (Alcidamea) acuticornis
Creators: name: Boustani, Mira
name: Rasmont, Pierre
name: Dathe, Holger H.
name: Ghisbain, Guillaume
name: Kasparek, Max
name: Michez, Denis
name: Müller, Andreas
name: Pauly, Alain
name: Risch, Stefan
name: Straka, Jakub
name: Terzo, Michael
name: Achter, Xavier Van
name: Wood, Thomas J.
name: Nemer, Nabil
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Megachilidae
Hoplitis
Hoplitis acuticornis

description: Hoplitis (Alcidamea) acuticornis (Dufour and Perris, 1840) *
Distribution: PALAEARCTIC (Müller 2021).
Material examined. Bekaa: Ainata, 1556 m, 30.V.2017, 1♀, leg. Boustani M., Rasmont P., coll. MBOU.
N. Lebanon: Bcharre, Reforestation Area, 2347 m, 27.VI.2017, 1♂, leg. Boustani M.; Hadath El Jebbeh, Road to Wadi Al Fouar, 1553 m, 6.VI.2018, 1♀, leg. Boustani M.; Hadath El Jebbe, Al Fouar, 1529 m, 31.V.2019, 4♀, 2♂, leg. Boustani M.; Hadath El Jebbe, Al Fouar, 1529 m, 7.VI.2019, 1♀, leg. Boustani M., all coll. MBOU; Hadath El Jebbe, Al Fouar, 1468 m, 27.VI.2019, leg. Van Achter X., coll. XVA.
Flower records. Fabaceae: Lotus gebelia libanoticus, Vicia canescens, Vicia tenuifolia.
description: Published as part of Boustani, Mira, Rasmont, Pierre, Dathe, Holger H., Ghisbain, Guillaume, Kasparek, Max, Michez, Denis, Müller, Andreas, Pauly, Alain, Risch, Stefan, Straka, Jakub, Terzo, Michael, Achter, Xavier Van, Wood, Thomas J. & Nemer, Nabil, 2021, The bees of Lebanon (Hymenoptera: Apoidea: Anthophila), pp. 1-146 in Zootaxa 4976 (1) on page 53, DOI: 10.11646/zootaxa.4976.1.1, http://zenodo.org/record/4819018
Ronde chantée "La bigue-biguette"
Creators: name: Musée National Des Arts Et Traditions Populaires (Paris)
name: Centre D'ethnologie Française
Publisher: name: École des Hautes Études en Sciences Sociales; Institut  interdisciplinaire d'anthropologie du contemporain (Paris); Laboratoire d'anthropologie et d'histoire de l'institution de la culture (Paris)
Year: 2022

Abstract
Tahap Profesionalisme Guru Terhadap Perancangan Pengajaran Guru (The Level of Professionalism of Religious Primary School Teachers of the Islamic Religious Department of the Federal Territory Towards the Practice of Teaching Planning)
Creators: name: Mohd Nawi, Muhammad Zulazizi
Publisher: name: figshare
Year: 2022
Subjects: Education

description: Kajian ini dijalankan bagi mengenal pasti tahap profesionalisme guru sekolah rendah agama Jabatan Agama Islam Wilayah Persekutuan (JAWI) terhadap amalan perancangan pengajaran. Secara umumnya, reka bentuk kajian ini adalah kajian kuantitatif dan instrumen kajian yang digunakan ialah dalam bentuk set soal selidik. Di samping itu, bilangan sampel kajian yang diambil adalah seramai 274 responden yang terdiri daripada guru-guru Sekolah Rendah Agama (SRA) JAWI di Wilayah Persekutuan Kuala Lumpur. Data kuantitatif ini dianalisis secara deskriptif melalui perisian SPSS, versi 22 untuk mendapatkan kekerapan, peratus, min dan sisihan piawai. Dapatan kajian menunjukkan tahap profesionalisme guru SRA-JAWI di Wilayah Persekutuan Kuala Lumpur berdasarkan amalan perancangan pengajaran berada pada tahap tinggi (M=4.40, SP=0.32). Implikasi kajian ini dapat menjadi panduan kepada guru-guru yang lain dalam usaha menambahbaik amalan perancangan pengajaran dalam bidang masing-masing dan mampu menghasilkan pengajaran yang berkesan dan berkualiti. Sebagai kesimpulannya, kualiti amalan perancangan pengajaran guru SRA-JAWI di Wilayah Persekutuan Kuala Lumpur perlu dikekalkan agar kecemerlangan pendidikan berterusan dan mampu berdaya saing di persada antarabangsa.
Hoplitis (Hoplitis) annulata Latreille 1811
Creators: name: Boustani, Mira
name: Rasmont, Pierre
name: Dathe, Holger H.
name: Ghisbain, Guillaume
name: Kasparek, Max
name: Michez, Denis
name: Müller, Andreas
name: Pauly, Alain
name: Risch, Stefan
name: Straka, Jakub
name: Terzo, Michael
name: Achter, Xavier Van
name: Wood, Thomas J.
name: Nemer, Nabil
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Megachilidae
Hoplitis
Hoplitis annulata

description: Hoplitis (Hoplitis) annulata Latreille, 1811
Distribution: WEST PALAEARCTIC: Southern Europe, Mediterranean basin except Egypt, Libya and Tunisia, Turkey to Azerbaijan East (Müller 2021).
Literature. Mavromoustakis (1956) listed as the subspecies Hoplitis (Hoplitis) annulata (Latreille, 1811) crenulata (Morawitz, 1871) as Osmia (Anthocopa) crenulata Morawitz, 1871.
Mount Lebanon, Gounnie [Jounieh], 14.V.1953, 2♀, 1♂; Beirut, 4.VI.1954, 1♀ all det. & leg. Mavromoustakis G.A. Material examined. Mount Lebanon: Barouk, 1086 m, 12. VIII.2019, 1♀, leg. Boustani M., coll. MBOU.
N. Lebanon: Donnieh, Nemrud-See, 245 m, 28.V.2012, 4♀, leg. Kasparek M., coll. MKAS; Qanat, Qornet Dammouaa, 1231 m, 22.VI.2017, 2♀, leg. Boustani M.; 31.V.2017, 1♂, leg. Boustani M., all coll. MBOU.
Flower records. Boraginaceae: Echium glomeratum, Echium italicum.
description: Published as part of Boustani, Mira, Rasmont, Pierre, Dathe, Holger H., Ghisbain, Guillaume, Kasparek, Max, Michez, Denis, Müller, Andreas, Pauly, Alain, Risch, Stefan, Straka, Jakub, Terzo, Michael, Achter, Xavier Van, Wood, Thomas J. & Nemer, Nabil, 2021, The bees of Lebanon (Hymenoptera: Apoidea: Anthophila), pp. 1-146 in Zootaxa 4976 (1) on page 53, DOI: 10.11646/zootaxa.4976.1.1, http://zenodo.org/record/4819018
Additional file 4 of Implementation fidelity and acceptability of an intervention to improve vaccination uptake and child health in rural India: a mixed methods evaluation of a pilot cluster randomized controlled trial
Creators: name: Pérez, Myriam Cielo
name: Chandra, Dinesh
name: Koné, Georges
name: Rohit Singh
name: Ridde, Valery
name: Sylvestre, Marie-Pierre
name: Aaditeshwar Seth
name: Johri, Mira
Publisher: name: figshare
Year: 2020
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 4. Guide small group meeting with communities.
Factors influencing women's selection of infant feeding method
Creators: name: Godson, Diane
Publisher: name: Australian Catholic University
Year: 2005

description: Decision making could be defined as the ability to make a choice or a judgement before an individual takes action. How the individual works through the process of making a decision is influenced by a number of factors. It is acknowledged decision making is a complex process that involves cognitive and affective thought processing, together with interpretation, understanding, choosing between alternatives and taking action. The steps involved in this process are varied and range from a few to many depending on whose literature one is reading at the time. This descriptive cross sectional study aimed to determine what factors influenced a woman's decision when choosing the infant feeding method for her newborn. The information was gathered by means of a survey questionnaire and follow-up telephone interview. The factors identified as being important or influencing the decision were included on the survey. These factors were highlighted in previous studies and were considered part of the Theory of Reasoned Action (TRA) the framework on which this study was based. The one hundred and sixteen women who participated in this study had delivered term babies - that is babies over thirty-seven weeks gestation, in two hospitals in metropolitan Melbourne. A number of assumptions were tested. The descriptive statistics was generated using Statistical Package for Social Sciences (SPSS) Version 7. The qualitative data was analysed using thematic analysis. Eighty-five per cent (85%) of the women in this study made the decision to breastfeed and seventy-five per cent (75%) made this decision prior to their pregnancy being confirmed. Ninety-seven (83.6%) of the women stated their own values and beliefs had a major influence (i) on their infant feeding decision with just over twenty per cent (20.2%) of the women indicating the midwife had a major influence on their decision.;Results of data supported or refuted the assumptions made at the beginning of the study and previous studies. These results also identified areas in midwifery practice that require change. This in itself will be a challenge for midwives. How they respond to this challenge may have an impact of the way women make the decision regarding their choice of infant feeding
Hoplitis (Anthocopa) bisulca
Creators: name: Boustani, Mira
name: Rasmont, Pierre
name: Dathe, Holger H.
name: Ghisbain, Guillaume
name: Kasparek, Max
name: Michez, Denis
name: Müller, Andreas
name: Pauly, Alain
name: Risch, Stefan
name: Straka, Jakub
name: Terzo, Michael
name: Achter, Xavier Van
name: Wood, Thomas J.
name: Nemer, Nabil
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Megachilidae
Hoplitis
Hoplitis bisulca

description: Hoplitis (Anthocopa) bisulca (Gerstaecker, 1869) *
Distribution: WEST PALAEARCTIC (Müller 2021)
Material examined. N. Lebanon: Horch Ehden, 1625 m, 12. VII.2019, 1♂; 24. VII.2019, 1♀; 31. VII.2019, 1♀; 29. VII.2019, 1♀; 1686 m, 24. VII.2019, 1♀, all leg. Van Achter X., all coll. XVA.
Flower records. Fabaceae: Medicago sp.
description: Published as part of Boustani, Mira, Rasmont, Pierre, Dathe, Holger H., Ghisbain, Guillaume, Kasparek, Max, Michez, Denis, Müller, Andreas, Pauly, Alain, Risch, Stefan, Straka, Jakub, Terzo, Michael, Achter, Xavier Van, Wood, Thomas J. & Nemer, Nabil, 2021, The bees of Lebanon (Hymenoptera: Apoidea: Anthophila), pp. 1-146 in Zootaxa 4976 (1) on page 53, DOI: 10.11646/zootaxa.4976.1.1, http://zenodo.org/record/4819018
Hoplitis (Alcidamea) campanularis Morawitz 1877
Creators: name: Boustani, Mira
name: Rasmont, Pierre
name: Dathe, Holger H.
name: Ghisbain, Guillaume
name: Kasparek, Max
name: Michez, Denis
name: Müller, Andreas
name: Pauly, Alain
name: Risch, Stefan
name: Straka, Jakub
name: Terzo, Michael
name: Achter, Xavier Van
name: Wood, Thomas J.
name: Nemer, Nabil
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Megachilidae
Hoplitis
Hoplitis campanularis

description: Hoplitis (Alcidamea) campanularis Morawitz, 1877 *
Distribution: WEST PALAEARCTIC: Western, Eastern and Northern Mediterranean basin (Müller 2021).
Material examined. N. Lebanon: Donnieh, Wadi Cehennem oberth. Quemmamine, 1393 m, 23.V.2012, 1♀, leg. Kasparek M., coll. MKAS; Arz Tannourine, Trail 4, 1714 m, 7.VI.2017, 2♀, leg. Boustani M.; 1767 m, 7.VI.2017, 1♀, leg. Boustani M., coll. MBOU.
Flower records. Campanulaceae: Campanula stricta.
description: Published as part of Boustani, Mira, Rasmont, Pierre, Dathe, Holger H., Ghisbain, Guillaume, Kasparek, Max, Michez, Denis, Müller, Andreas, Pauly, Alain, Risch, Stefan, Straka, Jakub, Terzo, Michael, Achter, Xavier Van, Wood, Thomas J. & Nemer, Nabil, 2021, The bees of Lebanon (Hymenoptera: Apoidea: Anthophila), pp. 1-146 in Zootaxa 4976 (1) on page 53, DOI: 10.11646/zootaxa.4976.1.1, http://zenodo.org/record/4819018
Righting women's writing: A re-examination of the journey toward literary success by late eighteenth-century and early nineteenth century women writers
Creators: name: Stanford, Roslyn
Publisher: name: Australian Catholic University
Year: 2000

description: This thesis studies the progressive nature of women's writing and the various factors that helped and hindered the successful publication of women's written works in the late eighteenth and early nineteenth centuries. The thesis interrogates culturally encoded definitions of the term 'success' in relation to the status of these women writers. In a time when success meant, according to the Oxford English Dictionary, 'attainment of wealth or position', women could never achieve a level of success equal to the male elite. The dichotomous worldview, in which women were excluded from almost all active participation in the public sphere, led to a literary protest by women. However, the male-privileged binary system is seen critically to affect women's literary success. Hence, a redefinition of success will specifically refer to the literary experience of these women writers and a long-lasting recognition of this experience in the twentieth century. An examination of literary techniques used in key works from Catherine Macaulay, Mary Wollstonecraft, Hannah More, Mary Shelley and Jane Austen suggests that there was a critical double standard with which women writers were constantly faced. The literary techniques, used by the earlier writers, fail in overcoming this critical double standard because of their emphasis on revolution. However, the last two women writers become literary successes (according to my reinterpretation of the term) because of their particular emphasis on amelioration rather than revolution. The conclusion of the thesis suggests that despite the 'unsuccessful' literary attempts by the first three women authors, there is an overall positive progression in women's journey toward literary success.;Described as the 'generational effect', this becomes the fundamental point of the study, because together these women represent a combined movement which challenges a system of patriarchal tradition, encouraging women to continue to push the gender relations' boundaries in order to be seen as individual, successful writers.
Additional file 1 of Implementation fidelity and acceptability of an intervention to improve vaccination uptake and child health in rural India: a mixed methods evaluation of a pilot cluster randomized controlled trial
Creators: name: Pérez, Myriam Cielo
name: Chandra, Dinesh
name: Koné, Georges
name: Rohit Singh
name: Ridde, Valery
name: Sylvestre, Marie-Pierre
name: Aaditeshwar Seth
name: Johri, Mira
Publisher: name: figshare
Year: 2020
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 1. Good Reporting of A Mixed Methods Study (GRAMMS) checklist.
Quatrième figure de quadrille et galop final
Creators: name: Musée National Des Arts Et Traditions Populaires (Paris)
name: Centre D'ethnologie Française
Publisher: name: École des Hautes Études en Sciences Sociales; Institut  interdisciplinaire d'anthropologie du contemporain (Paris); Laboratoire d'anthropologie et d'histoire de l'institution de la culture (Paris)
Year: 2022

Abstract
Additional file 3 of Implementation fidelity and acceptability of an intervention to improve vaccination uptake and child health in rural India: a mixed methods evaluation of a pilot cluster randomized controlled trial
Creators: name: Pérez, Myriam Cielo
name: Chandra, Dinesh
name: Koné, Georges
name: Rohit Singh
name: Ridde, Valery
name: Sylvestre, Marie-Pierre
name: Aaditeshwar Seth
name: Johri, Mira
Publisher: name: figshare
Year: 2020
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 3. Qualitative Tools.
Additional file 5 of Implementation fidelity and acceptability of an intervention to improve vaccination uptake and child health in rural India: a mixed methods evaluation of a pilot cluster randomized controlled trial
Creators: name: Pérez, Myriam Cielo
name: Chandra, Dinesh
name: Koné, Georges
name: Rohit Singh
name: Ridde, Valery
name: Sylvestre, Marie-Pierre
name: Aaditeshwar Seth
name: Johri, Mira
Publisher: name: figshare
Year: 2020
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 5. Additional information assessing fidelity of the intervention Tika Vaani.
The effect of gait training in a virtual reality (VR) environment on gait-related, functional outcome parameters in people with neurological gait disorders - a systematic review.
Creators: name: Hamann, Christina
name: Brust, Anne
name: Luedtke, Kerstin
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Medical Sciences
subject: Physiotherapy
subject: Neurosciences
subject: FOS: Clinical medicine
subject: Medicine and Health Sciences
subject: Medical Specialties
subject: Rehabilitation and Therapy
subject: Neurology

description: This is a registration of a systematic review whose aim is to investigate the effect of gait training in a virtual reality (VR) environment on gait-related, functional outcome parameters in people with neurological gait disorders.
Hoplitis (Alcidamea) ciliaris
Creators: name: Boustani, Mira
name: Rasmont, Pierre
name: Dathe, Holger H.
name: Ghisbain, Guillaume
name: Kasparek, Max
name: Michez, Denis
name: Müller, Andreas
name: Pauly, Alain
name: Risch, Stefan
name: Straka, Jakub
name: Terzo, Michael
name: Achter, Xavier Van
name: Wood, Thomas J.
name: Nemer, Nabil
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Megachilidae
Hoplitis
Hoplitis ciliaris

description: Hoplitis (Alcidamea) ciliaris (Pérez, 1902) *
Distribution: WEST PALAEARCTIC: Northern and eastern Mediterranean (Müller 2021).
Material examined. Mount Lebanon: Maaser Al Chouf, 1364 m, 29.V.2019, 1♀, leg. Boustani M.
N. Lebanon: Hadath El Jebbe, Chemin Wadi Ain El Raha, 1519 m, 29.VI.2017, 1♂, leg. Boustani M., all coll. MBOU.
Flower records. Fabaceae: Medicago sp.; Lamiaceae: Stachys cretica.
description: Published as part of Boustani, Mira, Rasmont, Pierre, Dathe, Holger H., Ghisbain, Guillaume, Kasparek, Max, Michez, Denis, Müller, Andreas, Pauly, Alain, Risch, Stefan, Straka, Jakub, Terzo, Michael, Achter, Xavier Van, Wood, Thomas J. & Nemer, Nabil, 2021, The bees of Lebanon (Hymenoptera: Apoidea: Anthophila), pp. 1-146 in Zootaxa 4976 (1) on page 53, DOI: 10.11646/zootaxa.4976.1.1, http://zenodo.org/record/4819018
Additional file 10 of High conservation combined with high plasticity: genomics and evolution of Borrelia bavariensis
Creators: name: Becker, Noémie S.
name: Rollins, Robert E.
name: Nosenko, Kateryna
name: Paulus, Alexander
name: Martin, Samantha
name: Krebs, Stefan
name: Takano, Ai
name: Sato, Kozue
name: Kovalev, Sergey Y.
name: Kawabata, Hiroki
name: Fingerle, Volker
name: Margos, Gabriele
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 10: Supplementary Table 1. Plasmid partition genes identified in 33 B. bavariensis strains. Supplementary Table 2. Primers used for qPCR.
Scalable Hash Tables
Creators: name: Maier, Tobias
Publisher: name: Karlsruher Institut für Technologie (KIT)
Year: 2022
Subjects: Hash tables
Scaling
Memory
Cache efficiency
Concurrency
Approximate membership query filter

description: The term scalability with regards to this dissertation has two meanings: It means taking the best possible advantage of the provided resources (both computational and memory resources) and it also means scaling data structures in the literal sense, i.e., growing the capacity, by “rescaling” the table. Scaling well to computational resources implies constructing the fastest best per- forming algorithms and data structures. On today’s many-core machines the best performance is immediately associated with parallelism. Since CPU frequencies have stopped growing about 10-15 years ago, parallelism is the only way to take ad- vantage of growing computational resources. But for data structures in general and hash tables in particular performance is not only linked to faster computations. The most execution time is actually spent waiting for memory. Thus optimizing data structures to reduce the amount of memory accesses or to take better advantage of the memory hierarchy especially through predictable access patterns and prefetch- ing is just as important. In terms of scaling the size of hash tables we have identified three domains where scaling hash-based data structures have been lacking previously, i.e., space effi- cient growing, concurrent hash tables, and Approximate Membership Query data structures (AMQ-filter). Throughout this dissertation, we describe the problems in these areas and develop efficient solutions. We highlight three different libraries that we have developed over the course of this dissertation, each containing mul- tiple implementations that have shown throughout our testing to be among the best implementations in their respective domains. In this composition they offer a comprehensive toolbox that can be used to solve many kinds of hashing related problems or to develop individual solutions for further ones. DySECT is a library for space efficient hash tables specifically growing space effi- cient hash tables that scale with their input size. It contains the namesake DySECT data structure in addition to a number of different probing and cuckoo based im- plementations. Growt is a library for highly efficient concurrent hash tables. It contains a very fast base table and a number of extensions to adapt this table to match any purpose. All extension can be combined to create a variety of different interfaces. In our extensive experimental evaluation, each adaptation has shown to be among the best hash tables for their specific purpose. Lpqfilter is a library for concurrent approximate membership query (AMQ) data structures. It contains some original data structures, like the linear probing quotient filter, as well as some novel approaches to dynamically sized quotient filters.
Correcting the dose calibration error in the pre-treatment verification of VMAT radiotherapy plans
Creators: name: Jeno Palvolgyi
Publisher: name: Zenodo
Year: 2022
Subjects: pre-treatment verification ,VMAT RT

description: Abstract Purpose: To correct the dose calibration error in the pre-treatment verification of VMAT radiotherapy
 performed with the Octavius phantom and 729 detector array,
 Methods: The gamma index measures the difference between the computed dose distribution by the treatment
 planning system and the dose distribution obtained with the QA device in pre-treatment plan verification. The
 gamma index is affected by several factors. One of these is the rotating phantom setup position error. In our previous
 study, we analyzed the influence of the rotating phantom's shift and we proposed a method to reduce it.
 In the present study, we analyzed the factors concerning the dose delivery and the dose measurement of the QA
 plans affecting the gamma index and gamma distribution.
 18 treatment plans of 16 prostate, bladder, and rectum cancer patients' RT plans' Gamma distributions and Gamma
 index histograms were reviewed by repeating the gamma analysis after rescaling the measured dose distributions by the
 factors between 0,99-1.03.
 Results 4 patients' plans showed optimal Gamma histogram without rescaling, while 4-4 patients' plans showed
 better Gamma index distributions and Gamma index histograms after rescaling the measured QA plan's dose
 distributions with factors 1.01 or 1.02.
Additional file 5 of High conservation combined with high plasticity: genomics and evolution of Borrelia bavariensis
Creators: name: Becker, Noémie S.
name: Rollins, Robert E.
name: Nosenko, Kateryna
name: Paulus, Alexander
name: Martin, Samantha
name: Krebs, Stefan
name: Takano, Ai
name: Sato, Kozue
name: Kovalev, Sergey Y.
name: Kawabata, Hiroki
name: Fingerle, Volker
name: Margos, Gabriele
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 5: Supplementary Figure 5. Schematic representation of plasmid subtypes and fusion/relocation events on lp17, lp28–4, lp28–7 and cp32–1. The different plasmid subtypes (numbered arbitrarily) are represented as black bars. We defined as a new plasmid subtype, a plasmid sequence that had, with respect to the other plasmid subtypes, either presence of 400 bp or longer indels or obvious evidence of past interplasmid DNA exchanges (translocations). We used BLAST v. 2.8.1 [33, 34]⁠ to identify plasmid types and colour-shaded areas represent BLAST hits on the same strand (blue) and inversions (pink). Different shades of color are just used for clarity and have no meaning. Dashed lines represent plasmid fusions. Scale bars above the plots are plasmid lengths in kb. *: specific cases: Arh913 cp32–1 could no be assembled. Konnai17 had two lp28–7 plasmids, the second one has the same subtype as plasmid lp28–7 in FujiP2.
Hoplitis (Anthocopa) daniana
Creators: name: Boustani, Mira
name: Rasmont, Pierre
name: Dathe, Holger H.
name: Ghisbain, Guillaume
name: Kasparek, Max
name: Michez, Denis
name: Müller, Andreas
name: Pauly, Alain
name: Risch, Stefan
name: Straka, Jakub
name: Terzo, Michael
name: Achter, Xavier Van
name: Wood, Thomas J.
name: Nemer, Nabil
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Megachilidae
Hoplitis
Hoplitis daniana

description: Hoplitis (Anthocopa) daniana (Mavromoustakis, 1949) *
Distribution: EAST MEDITERRANEAN (Müller 2021).
Material examined. Mount Lebanon: Chammis, Wadi Cheber, 373 m, 26.IV.2019, 1♀, leg. Boustani M.; Shouf Biosphere Reserve, Barouk-Maaser dirt road, 1769 m, 16.V.2019, 1♀, leg. Boustani M., all coll. MBOU.
Flower records. Boraginaceae: Cynoglossum nebrodense.
description: Published as part of Boustani, Mira, Rasmont, Pierre, Dathe, Holger H., Ghisbain, Guillaume, Kasparek, Max, Michez, Denis, Müller, Andreas, Pauly, Alain, Risch, Stefan, Straka, Jakub, Terzo, Michael, Achter, Xavier Van, Wood, Thomas J. & Nemer, Nabil, 2021, The bees of Lebanon (Hymenoptera: Apoidea: Anthophila), pp. 1-146 in Zootaxa 4976 (1) on page 53, DOI: 10.11646/zootaxa.4976.1.1, http://zenodo.org/record/4819018
Additional file 4 of High conservation combined with high plasticity: genomics and evolution of Borrelia bavariensis
Creators: name: Becker, Noémie S.
name: Rollins, Robert E.
name: Nosenko, Kateryna
name: Paulus, Alexander
name: Martin, Samantha
name: Krebs, Stefan
name: Takano, Ai
name: Sato, Kozue
name: Kovalev, Sergey Y.
name: Kawabata, Hiroki
name: Fingerle, Volker
name: Margos, Gabriele
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 4: Supplementary Figure 4. Coverage ratio of European replicons as a proxy for copy number. Illumina raw reads were mapped with BWA-MEM algorithm v. 0.7.17-r1188 [88]⁠ to the final reconstructed genomes and the ratio of the coverage of each replicon with respect to the chromosome was computed in each European isolate. Error bars show standard error of the mean. Dark blue numbers indicate the number of plasmids of this type in the European sample. Wilcoxon Rank Sum Tests comparing coverage of each plasmid with that of the chromosomes: P-Value after Bonferroni-Holm correction *:
EDAM ontology; tools and infrastructure
Creators: name: LAMOTHE, Lucie
name: Gaignard, Alban
name: Kierkegaard, Mads
name: Hager Eldakroury
name: Black, Melissa
name: Kuzmin, Ivan
name: Jaaniso, Erik
name: Brancotte, Bryan
name: Ison, Jon
name: Schwämmle, Veit
name: Matúš Kalaš
name: Ménager, Hervé
Publisher: name: F1000 Research Limited
Year: 2022

description: EDAM is an ontology of concepts prevalent in the data analysis and data management in life sciences. EDAM is developed in a participatory and transparent fashion, within a broad and growing community of contributors from both inside and outside of ELIXIR. This development model, based on the contribution of a large number of scientific experts, therefore comes with its own set of challenges.

 To streamline and accelerate the evolution of EDAM, we have developed and integrated a set of tools that automate the quality control and release process for the ontology. In addition to ensuring the global consistency of EDAM, it enforces edition best practices both at the syntactic and semantic levels. These tools have been integrated in a continuous integration (CI) pipeline, automated using GitHub Actions in the source-code repository.

 EDAM contribution toolkit also include:
 EDAM Browser, a web interface that lets users explore EDAM and its usage graphically
 EDAM Popovers, a web-browser extension showing details of EDAM concepts selected in any website
 EDAMmap, a tool for mapping natural language text to EDAM ontology concepts

 These tools enable more efficient and higher-quality maintenance of EDAM, and rapid feedback to the contributors who are encouraged to suggest direct contributions.
Hoplitis (Anthocopa) duckeana
Creators: name: Boustani, Mira
name: Rasmont, Pierre
name: Dathe, Holger H.
name: Ghisbain, Guillaume
name: Kasparek, Max
name: Michez, Denis
name: Müller, Andreas
name: Pauly, Alain
name: Risch, Stefan
name: Straka, Jakub
name: Terzo, Michael
name: Achter, Xavier Van
name: Wood, Thomas J.
name: Nemer, Nabil
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Megachilidae
Hoplitis
Hoplitis duckeana

description: Hoplitis (Anthocopa) duckeana (Kohl, 1905) *
Distribution: WEST PALAEARCTIC (Müller 2021).
Material examined. Mount Lebanon: Jabal Moussa Biosphere Reserve, Qehmez Gate, 1401 m, 21. VIII.2018, 1♀, leg. Boustani M., Nemer N.; Laqlouq, 1660 m, 6. VII.2019, 1♂, leg. Van Achter X.; Jabal Moussa, Trail Qornet El Der, 1364 m, 18. VII.2019, 1♂, leg. Boustani M. all coll. MBOU.
N. Lebanon: Horch Ehden, 1625 m, 24. VII.2019, 1♀, leg. Van Achter X.; Bcharre, 1900 m, 29. VII.2019, 1♂, leg. Van Achter X., all coll. XVA.
Flower records. Caprifoliaceae: Cephalaria sp., Scabiosa sp., Scabiosa argentea; Fabaceae: Ononis natrix.
description: Published as part of Boustani, Mira, Rasmont, Pierre, Dathe, Holger H., Ghisbain, Guillaume, Kasparek, Max, Michez, Denis, Müller, Andreas, Pauly, Alain, Risch, Stefan, Straka, Jakub, Terzo, Michael, Achter, Xavier Van, Wood, Thomas J. & Nemer, Nabil, 2021, The bees of Lebanon (Hymenoptera: Apoidea: Anthophila), pp. 1-146 in Zootaxa 4976 (1) on page 54, DOI: 10.11646/zootaxa.4976.1.1, http://zenodo.org/record/4819018
Additional file 1 of High conservation combined with high plasticity: genomics and evolution of Borrelia bavariensis
Creators: name: Becker, Noémie S.
name: Rollins, Robert E.
name: Nosenko, Kateryna
name: Paulus, Alexander
name: Martin, Samantha
name: Krebs, Stefan
name: Takano, Ai
name: Sato, Kozue
name: Kovalev, Sergey Y.
name: Kawabata, Hiroki
name: Fingerle, Volker
name: Margos, Gabriele
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Supplementary Figure 1. Coverage of raw reads mapping on PacBio fused plasmids cp32–7 + 7 + 11 (a) and cp32–12 + 5 + 6 (b) of isolate NT24. Illumina raw reads were mapped with BWA-MEM algorithm v. 0.7.17-r1188 [88]⁠ on PacBio fused plasmids cp32–7 + 7 + 11 (a) and cp32–12 + 5 + 6 (b) of isolate NT24. Regions of low to null coverage (marked in red) show that the fusion is not supported by the short-read data.
An investigation of primary school teachers' problem-solving beliefs and practices in mathematics classrooms
Creators: name: Anderson, Judith
Publisher: name: Australian Catholic University
Year: 2000

description: Aims. Problem-solving approaches to teaching mathematics have been recommended in curriculum documents for some time but there is evidence to suggest that there has been limited classroom implementation both in Australia as well as overseas. This investigation explored the level of implementation of mathematical problem solving in primary classrooms in NSW. Teachers' beliefs about the role of problem solving in learning mathematics as well as their classroom practices were also investigated.
Rhetoric or reality: An exploratory study of the culture of Queensland Lutheran Schools
Creators: name: Marks, Ian
Publisher: name: Australian Catholic University
Year: 2000

description: Lutheran schools have a long heritage in Australia of offering Christian education within the theology of the Lutheran church. Early Queensland Lutheran schools developed as schools for children of Lutherans, while schools opened in the last twenty five years have been developed to offer Lutheran education to the wider community. Lutheran church and school literature suggest that Lutheran schools are characterised by a distinctive culture which pervades the school. This thesis presents research which explored the culture of Queensland Lutheran schools, comparing the research results with the rhetoric of the Lutheran church and schools.
Einzelne Poster zur Ankündigung einer Veranstaltungsreihe zum Forschungsdatenmanagement (Coffee Lectures) für das Wintersemester 2022/23
Creators: name: Strauch-Davey, Annette
Publisher: name: Zenodo
Year: 2022
Subjects: FDM
Forschungsdaten
Forschungsdatenmanagement
Open Science
Open Data
UB Hildesheim
Universitätsbibliothek Hildesheim
PR
Public Relations
Wissenschaftskommunikation

description: Forschungsdatenmanagement: Umgang mit Forschungsdaten in den "Coffee Lectures" Der Umgang mit Forschungsdaten ist essentiell für jede wissenschaftliche Tätigkeit und damit verbunden das "Data Handling" im eigenen Projekt.  „Offene Wissenschaft sei in Zeiten des globalen, digitalen Wandels eine wichtige Gewährleistung der verfassungsmäßig garantierten Freiheit der Wissenschaft“. Sie funktioniert immer dann, wenn Strategien und Verfahren gebündelt werden, sodass alle Bestandteile des wissenschaftlichen Prozesses offen zugänglich, nachvollziehbar und nachnutzbar gemacht werden. Um sich über Workflows, Standards und Fallbeispiele des Forschungsdatenmanagements auszutauschen, bietet die Annette Strauch-Davey seit 2018 „Coffee Lectures“ und Workshops an, in denen Studierende und Forscher*innen mit Expert*innen aus der Fachcommunity und externen Fachleuten zusammenkommen.

 Die Coffee Lectures finden mehrmals im Semester statt, auch im Wintersemester 2022/23.

 Der aktuelle Link wird noch bekanntgegeben! Informationen: annette.strauch-davey(at)uni-hildesheim.de Dies sind die Termine ifür das Wintersemester 2022/23.
Hoplitis (Hoplitis) libanensis
Creators: name: Boustani, Mira
name: Rasmont, Pierre
name: Dathe, Holger H.
name: Ghisbain, Guillaume
name: Kasparek, Max
name: Michez, Denis
name: Müller, Andreas
name: Pauly, Alain
name: Risch, Stefan
name: Straka, Jakub
name: Terzo, Michael
name: Achter, Xavier Van
name: Wood, Thomas J.
name: Nemer, Nabil
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Megachilidae
Hoplitis
Hoplitis libanensis

description: Hoplitis (Hoplitis) libanensis (Morice, 1901)
Distribution: LEVANT (Müller 2021).
Literature. Morice, 1901: Syria (Brumana) [Lebanon], 1899, 2♀, 2♂, type material, coll. Oxford University Museum of Natural History, coll. OUMNH.
description: Published as part of Boustani, Mira, Rasmont, Pierre, Dathe, Holger H., Ghisbain, Guillaume, Kasparek, Max, Michez, Denis, Müller, Andreas, Pauly, Alain, Risch, Stefan, Straka, Jakub, Terzo, Michael, Achter, Xavier Van, Wood, Thomas J. & Nemer, Nabil, 2021, The bees of Lebanon (Hymenoptera: Apoidea: Anthophila), pp. 1-146 in Zootaxa 4976 (1) on page 54, DOI: 10.11646/zootaxa.4976.1.1, http://zenodo.org/record/4819018
Additional file 2 of High conservation combined with high plasticity: genomics and evolution of Borrelia bavariensis
Creators: name: Becker, Noémie S.
name: Rollins, Robert E.
name: Nosenko, Kateryna
name: Paulus, Alexander
name: Martin, Samantha
name: Krebs, Stefan
name: Takano, Ai
name: Sato, Kozue
name: Kovalev, Sergey Y.
name: Kawabata, Hiroki
name: Fingerle, Volker
name: Margos, Gabriele
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2: Supplementary Figure 2. Comparison of three assemblers for Illumina assembly of 25 B. bavariensis isolates. These violin plots compare N50 (a) and total length of contigs (b) obtained with QUAST v. 4.6 [37]⁠ on assemblies performed with SPAdes v. 3.10.1 [31]⁠, SOAPdenovo v. 1.0 [35]⁠ and VelvetOptimizer v. 1.0 [36]⁠.
Hoplitis (Chlidoplitis) lysholmi
Creators: name: Boustani, Mira
name: Rasmont, Pierre
name: Dathe, Holger H.
name: Ghisbain, Guillaume
name: Kasparek, Max
name: Michez, Denis
name: Müller, Andreas
name: Pauly, Alain
name: Risch, Stefan
name: Straka, Jakub
name: Terzo, Michael
name: Achter, Xavier Van
name: Wood, Thomas J.
name: Nemer, Nabil
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Megachilidae
Hoplitis
Hoplitis lysholmi

description: Hoplitis (Chlidoplitis) lysholmi (Friese, 1899)
Distribution: LEVANT (Müller 2021).
Literature. Friese (1899): Mount Lebanon, 1.V.1899, males and females, type material (along with material from Mersina, Cyprus), det. Friese H., leg. Morice F.
description: Published as part of Boustani, Mira, Rasmont, Pierre, Dathe, Holger H., Ghisbain, Guillaume, Kasparek, Max, Michez, Denis, Müller, Andreas, Pauly, Alain, Risch, Stefan, Straka, Jakub, Terzo, Michael, Achter, Xavier Van, Wood, Thomas J. & Nemer, Nabil, 2021, The bees of Lebanon (Hymenoptera: Apoidea: Anthophila), pp. 1-146 in Zootaxa 4976 (1) on page 54, DOI: 10.11646/zootaxa.4976.1.1, http://zenodo.org/record/4819018
Additional file 6 of High conservation combined with high plasticity: genomics and evolution of Borrelia bavariensis
Creators: name: Becker, Noémie S.
name: Rollins, Robert E.
name: Nosenko, Kateryna
name: Paulus, Alexander
name: Martin, Samantha
name: Krebs, Stefan
name: Takano, Ai
name: Sato, Kozue
name: Kovalev, Sergey Y.
name: Kawabata, Hiroki
name: Fingerle, Volker
name: Margos, Gabriele
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 6: Supplementary Figure 6. Dotplot comparing annotation of strain PBi between our isolate and a previously published one. Comparison of gene content realized in RAST Annotation Server v. 2.0 [39, 40]⁠ on the main chromosome. PBi accession number in RAST: 290434.1.
Additional file 3 of High conservation combined with high plasticity: genomics and evolution of Borrelia bavariensis
Creators: name: Becker, Noémie S.
name: Rollins, Robert E.
name: Nosenko, Kateryna
name: Paulus, Alexander
name: Martin, Samantha
name: Krebs, Stefan
name: Takano, Ai
name: Sato, Kozue
name: Kovalev, Sergey Y.
name: Kawabata, Hiroki
name: Fingerle, Volker
name: Margos, Gabriele
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3: Supplementary Figure 3. Replicon assembly quality as a function of population, mapping method (a) and type of replicon (b). Illumina raw reads were mapped with BWA-MEM algorithm v. 0.7.17-r1188 [88]⁠ to the final reconstructed genomes and the relative standard deviation of the coverage of the raw reads was used as a measure of assembly quality. We compare here replicons from European (left bars) and Asian (right bars) genomes depending on (a) whether the replicon was made as one contig (pink) or as several contigs mapped to a reference (purple) and on (b) whether it was a chromosome (orange) or a plasmid (blue). Error bars show standard error of the mean. ***: Wilcoxon Rank Sum Test for Europe against Asia, P-value
Additional file 8 of High conservation combined with high plasticity: genomics and evolution of Borrelia bavariensis
Creators: name: Becker, Noémie S.
name: Rollins, Robert E.
name: Nosenko, Kateryna
name: Paulus, Alexander
name: Martin, Samantha
name: Krebs, Stefan
name: Takano, Ai
name: Sato, Kozue
name: Kovalev, Sergey Y.
name: Kawabata, Hiroki
name: Fingerle, Volker
name: Margos, Gabriele
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 8: Supplementary Figure 8. Genetic diversity along plasmid cp26 of B. bavariensis. Genetic diversity was estimated using R package pegas v. 0.12 [94]⁠ on orthologous sequences aligned with MAFFT v7.407 [46, 47]⁠ on 1000 bp windows sliding every 100 bp in Asian isolates only (a), European isolates only (b) and all isolates (c). Genes located on diversity peaks (d) come from RAST Annotation Server v. 2.0 [39, 40]⁠.