cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Multiple suppliers in permeable spaces
Creators: name: Fischer, Manuela
Publisher: name: Journal for Art Market Studies
Year: 2022

description: The focus of this paper is on collectors of naturalia who also gathered “ethnographic” objects alongside their main interest that lay in botany, zoology, mineralogy etc., providing collections to zoological gardens and museums of natural history. Carl Hagenbeck, Johann Umlauff and Otto Staudinger are only the most prominent names from the turn of century. They were the principals for many collecting projects. The permeability of scientific spaces in the nineteenth century is more visible in collections gathered by commercial expeditions with an orientation towards natural sciences than in ethnological and archaeological expeditions. Another aspect of this scholarly permeability was the popularization of science in the second half of the nineteenth century. Ernst Ule was a typical representative of this movement. The permeability between “scientific” and “commercial” interests and the necessary networks, programmatic in the “human science” in the late nineteenth century, is visible in the close interrelation between disciplines. The fact that the focus of these scholars was not the study of people in the first place but the collection of botanical or zoological specimens, where the knowledge of indigenous experts was indispensable, shaped not only the collection but also the relationship between the collectors and the communities involved.
description: Journal for Art Market Studies, Vol. 6 No. 1 (2022): Museums Trading on the Art Market
Additional file 5 of Neuroimaging studies of acupuncture on Alzheimer’s disease: a systematic review
Creators: name: Yin, Zihan
name: Wang, Ziqi
name: Li, Yaqin
name: Zhou, Jun
name: Chen, Zhenghong
name: Xia, Manze
name: Zhang, Xinyue
name: Wu, Jiajing
name: Zhao, Ling
name: Liang, Fanrong
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Cell Biology
Neuroscience
Biotechnology
Science Policy

description: Additional file 5. Neuroimaging results after acupuncture.
To Sell or Not to Sell? A Transatlantic Debate
Creators: name: Schöne, Dorothea
name: Köhler, Thomas
name: Bedford, Christopher
Publisher: name: Journal for Art Market Studies
Year: 2022

description: Panel discussion after the 2021 Richard Schoene lecture held by Christopher Bedford.
description: Journal for Art Market Studies, Vol. 6 No. 1 (2022): Museums Trading on the Art Market
Primordial Black Holes as Heat Sources for Living Systems with Longest Possible Lifetimes
Creators: name: Sivaram, C
name: Arun, Kenath
name: O, Kiren
Publisher: name: arXiv
Year: 2014
Subjects: subject: General Physics (physics.gen-ph)
subject: FOS: Physical sciences

description: Just forty years ago, Hawking wrote his famous paper on primordial black holes (PBH). There have been since innumerable discussions on the consequences of the existence of such exotic objects and ramifications of their properties. Here we suggest that PBH's in an ever expanding universe (as implied by dark energy domination, especially of a cosmological constant) could be the ultimate repository for long lived living systems. PBH's having solar surface temperatures would last 10^32 years as a steady power source and should be considered in any discussion on exobiological life.
description: 5 pages, 9 equations
The Gilbert Collection
Creators: name: Minter, Alice
Publisher: name: Journal for Art Market Studies
Year: 2022

description: The Rosalinde and Arthur Gilbert Collection, on long-term loan at the Victoria & Albert Museum since 2008, is one of the most comprehensive 20th century collections of decorative arts built by private collectors and on display at a public institution. In his 'quest for the best', Arthur regularly sold some objects and left clear instructions to keep his collection 'alive': curators should regularly envisage to sell objects deemed non longer suitable and used the proceeds exclusively for new acquisitions. While this practice is not uncommon in public insitutions, notably in America, it proves to be quite challenging for the V&A, the custodian of a national collection which cannot be deacessioned. Yet, the latest Gilbert disposal occured in 2019 and this article provides a case study of the process.
description: Journal for Art Market Studies, Vol. 6 No. 1 (2022): Museums Trading on the Art Market
Panduan Praktis Manajemen Publikasi OJS 2.X
Creators: name: Yunus, Muhammad
Publisher: name: Zenodo
Year: 2023
Subjects: panduan ojs 2
manajemen publikasi ojs 2

description: Disampaikan pada acara BIMTEK Tata Kelola OJS Standar Akreditasi dan DOAJ di STIKES Banyuwangi, 13-14 Pebruari 2023
The Nuremberg Ivory at Dumbarton Oaks
Creators: name: Salto Santamaría, Iñigo
Publisher: name: Journal for Art Market Studies
Year: 2022

description: The Incredulity of Thomas ivory plaque, held today at the Dumbarton Oaks Byzantine Collection in Washington, D.C, previously belonged to the Germanisches Nationalmuseum in Nuremberg. Deacessioned in 1936 in exchange of a Langobard book chest, it was purchased by the American collectors Mildred Barnes Bliss and Robert Woods Bliss, founders of Dumbarton Oaks, in 1937. The present article studies the deaccession and acquisition of the Nuremberg Ivory as a single phenomenon, aiming to understand the logics that lead to its exchange, as well as the effect it had on the Blisses' collecting patterns.
description: Journal for Art Market Studies, Vol. 6 No. 1 (2022): Museums Trading on the Art Market
Political Motive, Directorial Access, and an Opportunity for the Art Trade:
Creators: name: Jooss, Birgit
Publisher: name: Journal for Art Market Studies
Year: 2022

description: The art dealer firm of Julius Böhler, with offices and affiliated companies in Munich, Lucerne, Berlin, and New York, was a major art dealership in the German-speaking world in the first half of the twentieth century. Its business records, which have been the subject of extended research at the Munich Central Institute for Art History since 2019, demonstrate, among other trade activities, the close working relationship with the director of the Bavarian State Painting Collections Ernst Buchner (1892-1962). They cooperated in numerous exchanges due to the difficulty in obtaining foreign currency for sale transactions. Museum works, some from the Royal Bavarian Collections, thus entered the art trade and are today part of public collections abroad. The article examines the practice of exchanges driven partly by political motives during the National Socialist era and gives an insight into the close cooperation between museums and the art trade in the first decades of the twentieth century, and traces the path of two Old Masters to the present as examples of such transactions.
description: Journal for Art Market Studies, Vol. 6 No. 1 (2022): Museums Trading on the Art Market
Additional file 1 of Psychosocial implications of rare genetic skin diseases affecting appearance on daily life experiences, emotional state, self-perception and quality of life in adults: a systematic review
Creators: name: Fournier, Hugo
name: Calcagni, Nicolas
name: Morice-Picard, Fanny
name: Quintard, Bruno
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Neuroscience
Science Policy
Mental Health

description: Additional file 1: Evaluation grid for qualitative exploratory studies.
A Prototype System for Transnational Information Sharing and Process Coordination
Creators: name: S  Su
name: T R Kasad
name: M  Patil
name: A  Matsunaga
name: M  Tsugawa
name: V  Cavalli-Sforza
name: Carbonell, Jaime G.
name: Jansen, Peter J
name: W  Ward
name: R  Cole
name: D  Towsley
name: W.  Chen
name: A I Anton
name: Q  He
name: C.  McSweeney
name: L  De Brens
name: J  Ventura
name: P  Taveras
name: R  Connolly
name: C  Ortega
name: B  Piñeres
name: O  Brooks
Publisher: name: Figshare
Year: 2018
Subjects: subject: 89999 Information and Computing Sciences not elsewhere classified
subject: FOS: Computer and information sciences

description: Global problems such as disease detection and control, terrorism, immigration and border control, illicit drug trafficking, etc. require information sharing, coordination and collaboration among government agencies within a country and across national boundaries. This paper presents a prototype of a transnational information system which aims at achieving information sharing, process coordination and enforcement of policies, constraints, regulations, and security and privacy rules by integrating a distributed query processor with form-based and conversational user interfaces, a language translation system, an event server for event filtering and notification, and an event-trigger-rule server. The Web-services infrastructure is used to achieve the interoperation of these heterogeneous component systems.
Critical Behavior of Sn2P2S6 and Sn2P2(Se0.28S0.72)6 Crystals under High Hydrostatic Pressures
Creators: name: Zapeka, B.
name: Kostyrko, M.
name: Martynyuk-Lototska, I.
name: Vlokh, R.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Basing on the temperature dependences of optical birefringence for Sn2P2S6 and Sn2P2(Se0.28S0.72)6 crystals subjected to hydrostatic pressures, we prove unambiguously that Sn2P2S6 reveals a tricritical point on its (p,T)-phase diagram with the coordinates (p,T) = (4.3 kbar, 259 K), so that the second-order phase transition transforms into the first-order one whenever the pressure increases above 4.3 kbar. We also find that increasing hydrostatic pressure applied to Sn2P2(Se0.28S0.72)6 leads to the change in the phase transition character from tricritical to first-order. Further increase in the pressure up to ~ 2.5 kbar imposes splitting of the first-order paraelectric-to-feroelectric phase transition into two phase transitions, a second-order paraelectric-to-incommensurate one and a first-order incommensurate-to-ferroelectric transition.
description: 13 pages, 7 figures
Additional file 1 of Concerted phenotypic flexibility of avian erythrocyte size and number in response to dietary anthocyanin supplementation
Creators: name: Dzialo, Maciej
name: Bryła, Amadeusz
name: DeMoranville, Kristen J.
name: Carbeck, Katherine M.
name: Fatica, Olivia
name: Trost, Lisa
name: Pierce, Barbara
name: Sadowska, Edyta T.
name: McWilliams, Scott R.
name: Bauchinger, Ulf
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Fig. S1. Standardized effect sizes in response to anthocyanin-rich diet among non-flying (A) and flying starlings (B); in response to wind-tunnel flight activity among control-(C) and anthocyanin-diet (D) fed starlings. Effect size higher or lower than 0 indicates respectively higher or lower values among anthocyanin supplemented (panel A and B) or flying birds (panel C and D). Circles and squares depict directly measured and calculated variables respectively. Colors: light grey, dark grey and black indicate small (d ≥ 0.2), medium (d ≥ 0.5) and large effect (d ≥ 0.8) sizes following Cohen [138]. Standardized effect size (Cohen’s d) are reported with their 95% confidence interval. The detailed effect size estimates are described in the Additional file 1: Table S1. Hct Haematocrit; Hb content Haemoglobin content; RBCcount Red blood cell number; RBCarea Red blood cell surface area; MCH Mean cell haemoglobin; MCHC Mean cell haemoglobin concentration; MCV Mean cell volume; SA:V ratio Surface-area-to-volume ratio; TSAE Total surface area of erythrocytes; Hb:TSAE ratio Haemoglobin-to-total-surface-area-of-erythrocytes ratio. RBCmajor Red blood cell major length; RBCminor Red blood cell minor axis length; RBCar Red blood cell aspect ratio; RBCcirc Red blood cell circularity. Table S1. Effect size estimates (% change, absolute change and standardized Cohen’s d) for the comparisons of experimental groups (conditional effects) for all haematological variables considered in this study. Hct Haematocrit; Hb content Haemoglobin content; RBCcount Red blood cell number; RBCarea Red blood cell surface area; MCH Mean cell haemoglobin; MCHC Mean cell haemoglobin concentration; MCV Mean cell volume; SA:V ratio Surface-area-to-volume ratio; TSAE Total surface area of erythrocytes; Hb:TSAE ratio Haemoglobin-to-total-surface-area-of-erythrocytes ratio. RBCmajor Red blood cell major length; RBCminor Red blood cell minor axis length; RBCar Red blood cell aspect ratio; RBCcirc Red blood cell circularity.
A Signature Technique for Similarity-Based Queries
Creators: name: Faloutsos, Christos
name: H. V. Jagadis
name: Mendelzon, Alberto O
name: Milo, Tova
Publisher: name: Figshare
Year: 2018
Subjects: subject: 89999 Information and Computing Sciences not elsewhere classified
subject: FOS: Computer and information sciences

description: Sequences of real-valued data arise in many applications ranging from the stock market to electrocardiograms.
Zirkus in der Psychomotoriktherapie. Ein Leitfaden für die Praxis
Creators: name: Canova, Solvej
Publisher: name: Zenodo
Year: 2023
Subjects: Psychomotorik
Psychomotoriktherapie
Bachelorarbeit
Zirkus

description: Das Ziel der vorliegenden Entwicklungsarbeit ist es, mittels Literaturanalyse aufzuzeigen, dass sich der Zirkus als Thema in der Psychomotorik eignet. Anhand eines Expert:inneninterviews wurde ein Leitfaden erstellt. Dieser dient dazu, dass einzelne Übungen aus vier verschiedenen Zirkusdisziplinen (Akrobatik, Jonglage, Diabolo und Zaubern) von Psychomotoriktherapeut:innen in der therapeutischen Arbeit genutzt werden können. Um sowohl den Inhalt wie auch den Aufbau des Leitfadens zu überprüfen, wurde einerseits ein Projekt mit den Inhalten aus dem Leitfaden durchgeführt, und andererseits wurden Psychomotoriktherapeut:innen befragt, ob sie sich vorstellen könnten, den Leitfaden in ihrer Praxis anzuwenden. Zusammenfassend kann gesagt werden, dass sich durch zirzensische Angebote in der psychomotorischen Arbeit verschiedene Entwicklungsbereiche unterstützen lassen. Diverse Zirkusübungen können sowohl im Einzel- und Gruppensetting während der Therapie umgesetzt als auch in kleinen und grossen Gruppen in Form eines Projekts (z.B. Wartelistenangebot oder im präventiven Bereich) durchgeführt werden.
Additional file 1 of Selective footprints and genes relevant to cold adaptation and other phenotypic traits are unscrambled in the genomes of divergently selected chicken breeds
Creators: name: Romanov, Michael N.
name: Abdelmanova, Alexandra S.
name: Fisinin, Vladimir I.
name: Gladyr, Elena A.
name: Volkova, Natalia A.
name: Koshkina, Olga A.
name: Rodionov, Andrey N.
name: Vetokh, Anastasia N.
name: Gusev, Igor V.
name: Anshakov, Dmitry V.
name: Stanishevskaya, Olga I.
name: Dotsev, Arsen V.
name: Griffin, Darren K.
name: Zinovieva, Natalia A.
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Table S1. Major classical phenotypic characteristics and mutations in the Russian White (RUW), White Cornish (WCR), Ushanka (USH), and Orloff Mille Fleur (OMF) breeds studied.
A survey of sequential and systolic algorithms for the algebraic path problem
Creators: name: Fink, Eugene
Publisher: name: Figshare
Year: 2018
Subjects: subject: 89999 Information and Computing Sciences not elsewhere classified
subject: FOS: Computer and information sciences

description: We present a literature review on the algebraic path problem and describe different sequential and systolic algorithms for solving this problem.

A systolic algorithm is a parallel algorithm where computations are performed by a planar mesh of connected processors. All processors perform the same algorithm and every processor exchanges data only with its neighbours.

The algebraic path problem is the problem of performing a special unary operation, called closure, over a square matrix, whose entries are elements of a semiring. This problem generalizes some matrix problems (such as computing the inverse of a real-valued matrix), graph problems (e.g. transitive closure and reduction, shortest path, the stochastic communication network problem), and regular language problems (e.g. the proof of the correspondence between regular expressions and finite automata).

We describe two different approaches to an algebraic path problem and four special cases of the general problem: computing the closure of a matrix over a Dijkstra semiring, the transitive closure problem, the shortest path problem, and computing the inverse of a real-valued matrix. For each problem we present both sequential and systolic algorithms. Also, we describe a history of sequential and systolic solutions of each problem.
A tensão entre os princípios da segurança jurídica e da efetividade no Estado Democrático de Direito
Creators: name: NEVES, Fabrício Santos
name: CARDOSO, Geórgia Thâmisa Malta
name: ALVES, Filipe Fialho
Publisher: name: Zenodo
Year: 2019
Subjects: Segurança Jurídica
Efetividade
Processo Civil
Estado Democrático de Direito
Acesso à Justiça

description: Contextualizando o conflito entre os princípios da segurança jurídica e da efetividade nas discussões do acesso à justiça do processo civil, este artigo define, após breve excurso histórico sobre o papel do processo nos diferentes modelos de Estado, os papéis dos princípios no Estado de Direito que se diga democrático, os conceitos de segurança jurídica e de efetividade e, por fim, mostra que não é possível fazer uma escolha definitiva entre os dois, mas ponderá-los para que ambos os princípios sejam respeitados.
description: NEVES, Fabrício Santos; CARDOSO, Geórgia Thâmisa Malta; ALVES, Filipe Fialho. A tensão entre os princípios da segurança jurídica e da efetividade no Estado Democrático de Direito. CONGRESSO DE PROCESSO CIVIL INTERNACIONAL, 3., 2018, Vitória. Anais [...] Vitória: UFES, 2019. p. 82-96. Disponível em: https://periodicos.ufes.br/processocivilinternacional/article/view/26031
description: {"references": ["NEVES, Fabr\u00edcio Santos; ALVES, Filipe Fialho; CARDOSO, Ge\u00f3rgia Th\u00e2misa Malta. A tens\u00e3o entre os princ\u00edpios da seguran\u00e7a jur\u00eddica e da efetividade no Estado Democr\u00e1tico de Direito. In: III Congresso de Processo Civil Internacional, 3., 2018, Vit\u00f3ria. Anais... Vit\u00f3ria: UFES, 2018. p. 82-96."]}
A parallel algorithm for constructing binary decision diagrams
Creators: name: S  Kimura
name: E. M. Clarke
Publisher: name: Figshare
Year: 2018
Subjects: subject: 89999 Information and Computing Sciences not elsewhere classified
subject: FOS: Computer and information sciences

description: Abstract: "Ordered binary decision diagrams [1] are widely used for representing Boolean functions in various CAD applications. This paper gives a parallel algorithm for constructing such graphs and describes the performance of this algorithm on a 16 processor Encore Multimax. The execution statistics that we have obtained for a number of examples show that our algorithm achieves a high degree of parallelism. In paricular, with fifteen processors our algorithm is almost an order of magnitude faster on some examples than the program described in [2]. Moreover, on many examples it exhibits essentially linear speedup as the number of processors is increased.Our approach to binary decision diagrams is somewhat different from the one used in [1]. We view the binary decision diagram for an n-argument Boolean function as the minimal finite state automaton for the set of Boolean vectors of length n that satisfy f (i.e. the set of vectors in fΓäô(1)). Because the minimal finite automaton for a regular language is unique up to isomorphism, it is easy to argue that this representation provides a canonical form for Boolean functions. Boolean operations involving NOT, AND, OR, etc. are implemented by the standard constructions for complement, intersection, and union of the finite languages accepted by these automata.In general, each of these operations involves building a product automaton and then minimizing it. We discuss a parallel algorithm for computing the product of two automata and for minimizing the result. When we construct a binary decision graph, our algorithm follows the syntactic structure of the Boolean formula. First, the level of each Boolean operation is determined. Operations in the same level can be performed in parallel. If there are few operations at some level, then these operations are divided into a sequence of sub-operations that can be processed in parallel."
Biomechanical Research Methods Used in Chronic Stroke: Protocol for a Scoping Review of a Non-linear Approach
Creators: name: Pinho, Francisco
name: Pinho, Liliana
name: Silva, Augusta
name: De Freitas, Marta Sofia Nicolau Gonçalves
name: Joao Paulo Vilas Boas
name: Silva, Sandra Cristina Sousa
Publisher: name: Open Science Framework
Year: 2023
Subjects: subject: Medicine and Health Sciences
subject: Physiotherapy
subject: Rehabilitation and Therapy
subject: kinetic
subject: kinematic
subject: Chronic Stroke
subject: Assessment
subject: Non-linear

description: Linear and non-linear measures, complement each other and should be considered in the analysis of human movement, since both are sensitive to small disturbances that occur and influence performance and motor capacity (Costa et al., 2013). Thus, according to a linear perspective, all typical movement, without deviations that could be considered as errors, represents human movement with ideal variability, contrary to the perspective of the non-linear approach, whose movement with ideal variability is that which allows the individual to perform a panoply of variations to adapt to small disturbances induced by the environment (Cavanaugh et al., 2017). This reflects the rising interest that, nowadays, has been being verified in literature. Non-linear approach seems more consistent with dynamic human systems (Montesinos et al, 2018) and with the way in which intervention should be advocated in this domain (Harbourne & Stergiou, 2009, Cavanaugh et al., 2017, Kędziorek & Błażkiewicz, 2020). Within neuromotor possible disfunctions, stroke is presented as the condition that reflects movement complexitivity and variability impairments, which can lead to difficulties with functional tasks and decreased independence (Mukherjee, Koutakis, Siu, Fauyad & Stergiou, 2013; Hartman-Maeir, Soroker, Ring, Avni, & Katz, 2007; Adegoke, Olaniyi, & Akosile, 2012; Mukherjee et al., 2013). Therefore, understanding movement variability in post-stroke individuals can lead to the development of more effective rehabilitation strategies for improving functional outcomes in post-stroke individuals.
A randomized algorithm for learning Mahalanobis metrics : application to classification and regression of biological data
Creators: name: Langmead, Christopher James.
Publisher: name: Figshare
Year: 2018
Subjects: subject: 89999 Information and Computing Sciences not elsewhere classified
subject: FOS: Computer and information sciences

description: Abstract: "We present a randomized algorithm for semi-supervised learning of Mahalanobis metrics over R[superscript n]. The inputs to the algorithm are a set, U, of unlabeled points in R[superscript n], a set of pairs of points, S = [(x,y)[subscript i]]; x,y [element of] U, that are known to be similar, and a set of pairs of points, D = [(x,y)[subscript i]] ; x,y [element of] U, that are known to be dissimilar. The algorithm randomly samples S, D, and m-dimensional subspaces of R[superscript n] and learns a metric for each subspace. The metric over R[superscript n] is a linear combination of the subspace metrics. The randomization addresses issues of efficiency and overfitting. Extensions of the algorithm to learning non-linear metrics via kernels, and as a pre-processing step for dimensionality reduction are discussed. The new method is demonstrated on a regression problem (structure-based chemical shift prediction) and a classification problem (predicting clinical outcomes for immunomodularity strategies for treating severe sepsis).
Topological water wave state in a one-dimensional structure
Creators: name: Yang, Zhaoju
name: Gao, Fei
name: Zhang, Baile
Publisher: name: arXiv
Year: 2015
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Topological concepts have been introduced into electronic, photonic, and phononic systems, but have not been studied in surface-water-wave systems. Here we study a one-dimensional periodic resonant surface-water-wave system and demonstrate its topological transition. By selecting three different water depths, we can construct different types of water waves - shallow, intermediate and deep water waves. The periodic surface-water-wave system consists of an array of cylindrical water tanks connected with narrow water channels. As the width of connecting channel varies, the band diagram undergoes a topological transition which can be further characterized by Zak phase. This topological transition holds true for shallow, intermediate and deep water waves. However, the interface state at the boundary separating two topologically distinct arrays of water tanks can exhibit different bands for shallow, intermediate and deep water waves. Our work studies for the first time topological properties of water wave systems, and paves the way to potential management of water waves.
description: 13 pages, 4 figures
A Reference Architecture for Mobile Code Offload in Hostile Environments
Creators: name: Soumya  Simanta
name: Kiryong  Ha
name: Lewis, Grace A.
name: Morris, Edwin J.
name: Mahadev  Satyanarayanan
Publisher: name: Figshare
Year: 2018
Subjects: subject: 89999 Information and Computing Sciences not elsewhere classified
subject: FOS: Computer and information sciences

description: Handheld mobile technology can help disaster relief workers and soldiers in the field with tasks such as speech and image recognition, natural language processing, decision-making, and mission planning. However, these applications are computation-intensive, take a heavy toll on battery power, and often rely on good connectivity to networks, limiting their practical usefulness in a crisis. This paper presents a reference architecture for mobile devices that overcomes these limitations by exploiting cloudlets - VM-based code offload elements that are in single-hop proximity to mobile devices.
D8.1 Training Needs Specification and Proposed Solutions
Creators: name: Duschl, Albert
name: Himly, Martin
Publisher: name: Zenodo
Year: 2020
Subjects: NanoCommons
Deliverable
Training needs

description: This deliverable presents specifications of training needs established by the NanoCommons consortium, based on previous projects (like FP7 NanoEIS) and on the experiences of the consortium members, to support the NanoCommons nanoinformatics community. Unlike previous educational efforts which addressed experimental approaches and principles, NanoCommons is focused primarily on data management, and data exploitation via nanoinformatics tools and models to extract additional knowledge from large datasets, and training to support users in these aspects. The specific issues laid down in the DoA were further refined and a priority ranking was performed. This deliverable considers different training users and training formats, which allows establishment of a list of training priorities. Decisions are reached concerning which user group shall be targeted first and which training formats will be developed first.
Requirements Engineering Issues Experienced by Software Practitioners: A Study on Stack Exchange - Complementary Material
Creators: name: Freire, Sávio
name: Gomes, Felipe
name: Barbosa, Larissa
name: Mendes, Thiago Souto
name: Reges, Galdir
name: Maciel, Rita
name: Mendonça, Manoel
name: Spínola, Rodrigo
Publisher: name: Zenodo
Year: 2023

description: Complementary material of the paper Requirements Engineering Issues Experienced by Software Practitioners: A Study on Stack Exchange published in REFSQ'23.
Additional file 2 of Selective footprints and genes relevant to cold adaptation and other phenotypic traits are unscrambled in the genomes of divergently selected chicken breeds
Creators: name: Romanov, Michael N.
name: Abdelmanova, Alexandra S.
name: Fisinin, Vladimir I.
name: Gladyr, Elena A.
name: Volkova, Natalia A.
name: Koshkina, Olga A.
name: Rodionov, Andrey N.
name: Vetokh, Anastasia N.
name: Gusev, Igor V.
name: Anshakov, Dmitry V.
name: Stanishevskaya, Olga I.
name: Dotsev, Arsen V.
name: Griffin, Darren K.
name: Zinovieva, Natalia A.
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2: Fig. S1. Cross-validation (CV) error (Y-axis) for different K-values (X-axis). Fig. S2. Admixture bar plot at K = 2, 3, and 8 (the most probable number of ancestral populations) for the four chicken breeds studied: OMF, Orloff Mille Fleur; RUW, Russian White; USH, Ushanka; WCR, White Cornish.
EKT Technical Analysis Report (Output 7)
Creators: name: Rodríguez Malmerca, M.J.
name: Felpeto Guerrero, A.
Publisher: name: Zenodo
Year: 2023
Subjects: In-school placement
EKT Education and technological framework
In-School Placement Methodology
In-School Placement elearning system design

description: This report describes the initial architecture of the EKT advanced elearning system for iIn-School Placements. Its elaboration is supported by EKT Output 5 of (Report on in-school placements needs and possibilities of the technologies, Brandão Carvalho, J.A, Fernández-Morante, C., & et al., 2023) and Output 6 (Technological and educational framework for development of professional competences in in-school placement, Fernández-Morante, C., Cebreiro, B., Casal Otero, L. & Mareque León, 2023). Based on this proposal, which defines the set of tools and functionalities that guided the design of the EKT platform, the EKT System beta version was developed and piloted over two cycles (2021-2022) of experimentation and improved until the definition of the final version of the platform (2023), which is one of the main results of the EKT project.
description: EKT Project: Improving Educational innovation, competitiveness and quality of higher education through collaboration between University and Companies (Educational Knowledge Transfer). Agreement number 612414-EPP-1-2019-1-ES-EPPKA2-KA https://ektproject.eu/
A Scalable Approach to Thread-Level Speculation
Creators: name: J. Gregory Steffan
name: Colohan, Christopher B.
name: Zhai, Antonia
name: Mowry, Todd C.
Publisher: name: Figshare
Year: 2018
Subjects: subject: 89999 Information and Computing Sciences not elsewhere classified
subject: FOS: Computer and information sciences

description: While architects understand how to build cost-effective parallel machines across a wide spectrum of machine sizes (ranging from within a single chip to large-scale servers), the real challenge is how to easily create parallel software to effectively exploit all of this raw performance potential. One promising technique for overcoming this problem is Thread-Level Speculation (TLS), which enables the compiler to optimistically create parallel threads despite uncertainty as to whether those threads are actually independent. In this paper, we propose and evaluate a design for supporting TLS that seamlessly scales to any machine size because it is a straightforward extension of writeback invalidation-based cache coherence (which itself scales both up and down). Our experimental results demonstrate that our scheme performs well on both single-chip multiprocessors and on larger-scale machines where communication latencies are twenty times larger.
Some questions related to the Analyst’s TST and a conjecture of Carleson
Creators: name: Villa, Michele
Publisher: name: The University of Edinburgh
Year: 2020
Subjects: mathematical analysis
Euclidean space
uniform rectiﬁability

description: This thesis is constituted by two independent parts. In the first part we discuss several problems which relate to the Analyst's Travelling Salesman Theorem of Peter Jones and the theories of uniformly rectifiable sets and quasiminimal sets of David and Semmes. To say more, this first part splits naturally into two chapters, which are nevertheless connected. In a first chapter, we present a joint work with Jonas Azzam which shows that, in some sense, there exists a travelling salesman theorem for each property that characterises uniformly rectifiable sets. In a second chapter, we address the question of what type of geometric object can play the role of a curve in a higher dimensional setting, at least from the point of view of an Analyst's TST. The second part of this thesis is dedicated to presenting a joint work with Benjamin Jaye and Xavier Tolsa which settles a longstanding conjecture of Carleson, known in the field as Carleson ɛ² conjecture, in a positive sense
Impact of dietary fiber on gut microbiota composition, function and gut-brain-modules in healthy adults – a systematic review protocol
Creators: name: Lachmansingh, David Antoine
name: Valderrama, Benjamin
name: Bastiaanssen, Thomaz F.S.
name: Cryan, John F.
name: Clarke, Gerard
name: Lavelle, Aonghus
Publisher: name: Zenodo
Year: 2023
Subjects: Microbiome, dietary fiber, gut microbes, healthy individuals, fiber intervention

description: Uploaded is the PRISMA-P Reporting Checklist and PRISMA Flow Diagram as "Extended Data" for our Systematic Review Protocol
Additional file 3 of Selective footprints and genes relevant to cold adaptation and other phenotypic traits are unscrambled in the genomes of divergently selected chicken breeds
Creators: name: Romanov, Michael N.
name: Abdelmanova, Alexandra S.
name: Fisinin, Vladimir I.
name: Gladyr, Elena A.
name: Volkova, Natalia A.
name: Koshkina, Olga A.
name: Rodionov, Andrey N.
name: Vetokh, Anastasia N.
name: Gusev, Igor V.
name: Anshakov, Dmitry V.
name: Stanishevskaya, Olga I.
name: Dotsev, Arsen V.
name: Griffin, Darren K.
name: Zinovieva, Natalia A.
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3: Fig. S3. Distribution of ROH islands among chromosomes.
The necessity of the second postulate in special relativity
Creators: name: Drory, Alon
Publisher: name: arXiv
Year: 2014
Subjects: subject: General Physics (physics.gen-ph)
subject: FOS: Physical sciences

description: Many authors noted that the principle of relativity together with space-time homogeneity and isotropy restrict the form of the coordinate transformations from one inertial frame to another to being Lorentz-like. The equations contain a free parameter, $k$ (equal to $c^{-2}$ in special relativity), which value is claimed to be merely an empirical matter, so that special relativity does not need the postulate of constancy of the speed of light. I analyze this claim and argue that the distinction between the cases $k = 0$ and $k \neq 0$ is on the level of a postulate and that until we assume one or the other, we have an incomplete structure that leaves many fundamental questions undecided, including basic prerequisites of experimentation. I examine an analogous case in which isotropy is the postulate dropped and use it to illustrate the problem. Finally I analyze two attempts by Sfarti, and Behera and Mukhopadhyay to derive the constancy of the speed of light from the principle of relativity. I show that these attempts make hidden assumptions that are equivalent to the second postulate.
A Technique for Reducing Normal-Form Games to Compute a Nash Equilibrium
Creators: name: Conitzer, Vincent
name: Sandholm, Tuomas W
Publisher: name: Figshare
Year: 2018
Subjects: subject: 89999 Information and Computing Sciences not elsewhere classified
subject: FOS: Computer and information sciences

description: We present a technique for reducing a normal-form (aka. (bi)matrix) game, O, to a smaller normal-form game, R, for the purpose of computing a Nash equilibrium. This is done by computing a Nash equilibrium for a subcomponent, G, of O for which a certain condition holds. We also show that
such a subcomponent G on which to apply the technique can be found in polynomial time (if it exists), by showing that the condition that G needs to satisfy can be modeled as a Horn satis¯ability problem. We show that the technique does not extend to computing Pareto-optimal or welfare maximizing equilibria. We present a class of games, which we call ALAGIU (Any Lower Action Gives Identical Utility) games, for which recursive application of (special cases of) the technique is su±cient for ¯nding a Nash equilibrium in linear time. Finally, we discuss using the technique to compute approximate Nash equilibria.
Observing conformations of single FoF1-ATP synthases in a fast anti-Brownian electrokinetic trap
Creators: name: Su, Bertram
name: Dueser, Monika G.
name: Zarrabi, Nawid
name: Heitkamp, Thomas
name: Starke, Ilka
name: Börsch, Michael
Publisher: name: arXiv
Year: 2015
Subjects: subject: Quantitative Methods (q-bio.QM)
subject: Biomolecules (q-bio.BM)
subject: FOS: Biological sciences

description: To monitor conformational changes of individual membrane transporters in liposomes in real time, we attach two fluorophores to selected domains of a protein. Sequential distance changes between the dyes are recorded and analyzed by Forster resonance energy transfer (FRET). Using freely diffusing membrane proteins reconstituted in liposomes, observation times are limited by Brownian motion through the confocal detection volume. A. E. Cohen and W. E. Moerner have invented and built microfluidic devices to actively counteract Brownian motion of single nanoparticles in electrokinetic traps (ABELtrap). Here we present a version of an ABELtrap with a laser focus pattern generated by electro-optical beam deflectors and controlled by a programmable FPGA. This ABELtrap could hold single fluorescent nanobeads for more than 100 seconds, increasing the observation times of a single particle by more than a factor of 1000. Conformational changes of single FRET-labeled membrane enzymes FoF1-ATP synthase can be detected in the ABELtrap.
description: 10 pages, 3 figures
A Probabilistic Generative Model for GO Enrichment Analysis
Creators: name: Lu, Yong
name: Rosenfeld, Roni
name: Simon, Itamar
name: Nau, Gerard J
name: Bar-Joseph, Ziv
Publisher: name: Figshare
Year: 2018
Subjects: subject: 89999 Information and Computing Sciences not elsewhere classified
subject: FOS: Computer and information sciences

description: The Gene Ontology (GO) is extensively used to analyze
all types of high-throughput experiments.
However, researchers still face several challenges
when using GO and other functional annotation
databases. One problem is the large number of multiple
hypotheses that are being tested for each
study. In addition, categories often overlap with
both direct parents/descendents and other distant
categories in the hierarchical structure. This makes
it hard to determine if the identified significant categories
represent different functional outcomes or
rather a redundant view of the same biological processes.
To overcome these problems we developed
a generative probabilistic model which identifies a
(small) subset of categories that, together, explain
the selected gene set. Our model accommodates
noise and errors in the selected gene set and GO.
Using controlled GO data our method correctly
recovered most of the selected categories, leading
to dramatic improvements over current methods for
GO analysis. When used with microarray expression
data and ChIP-chip data from yeast and human our
method was able to correctly identify both general
and specific enriched categories which were overlooked
by other methods.
Additional file 4 of Selective footprints and genes relevant to cold adaptation and other phenotypic traits are unscrambled in the genomes of divergently selected chicken breeds
Creators: name: Romanov, Michael N.
name: Abdelmanova, Alexandra S.
name: Fisinin, Vladimir I.
name: Gladyr, Elena A.
name: Volkova, Natalia A.
name: Koshkina, Olga A.
name: Rodionov, Andrey N.
name: Vetokh, Anastasia N.
name: Gusev, Igor V.
name: Anshakov, Dmitry V.
name: Stanishevskaya, Olga I.
name: Dotsev, Arsen V.
name: Griffin, Darren K.
name: Zinovieva, Natalia A.
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 4: Fig. S4. Distribution of SNPs by FST value at pairwise comparison of breeds: A USH/OMF, B USH/RUW, and C USH/WCR. Breeds: OMF, Orloff Mille Fleur; RUW, Russian White; USH, Ushanka; WCR, White Cornish.
Local equilibrium solutions in simple anisotropic cosmological models, as described by relativistic fluid dynamics
Creators: name: Shogin, Dmitry
name: Amundsen, Per Amund
Publisher: name: arXiv
Year: 2015
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We test the physical relevance of the full and the truncated versions of the Israel-Stewart theory of irreversible thermodynamics in a cosmological setting. Using a dynamical systems method, we determine the asymptotic future of plane symmetric Bianchi type I spacetimes with a viscous mathematical fluid, keeping track of the magnitude of the relative dissipative fluxes, which determines the applicability of the Israel-Stewart theory. We consider the situations where the dissipative mechanisms of shear and bulk viscosity are involved separately and simultaneously. It is demonstrated that the only case in the given model when the fluid asymptotically approaches local thermal equilibrium, and the underlying assumptions of the Israel-Stewart theory are therefore not violated, is that of a dissipative fluid with vanishing bulk viscosity. The truncated Israel-Stewart equations for shear viscosity are found to produce solutions which manifest pathological dynamical features and, in addition, to be strongly sensitive to the choice of initial conditions. Since these features are observed already in the case of an oversimplified mathematical fluid model, we have no reason to assume that the truncation of the Israel-Stewart transport equations will produce relevant results for physically more realistic fluids. The possible role of bulk and shear viscosity in cosmological evolution is also discussed.
description: 18 pages, 1 figure
Constraining the properties of AGN host galaxies with Spectral Energy Distribution modeling
Creators: name: Ciesla, L.
name: Charmandaris, V.
name: Georgakakis, A.
name: Bernhard, E.
name: Mitchell, P. D.
name: Buat, V.
name: Elbaz, D.
name: Floc'h, E. Le
name: Lacey, C. G.
name: Magdis, G. E.
name: Xilouris, M.
Publisher: name: arXiv
Year: 2015
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: [abridged] We use the latest release of CIGALE, a galaxy SED fitting model relying on energy balance, to study the influence of an AGN in estimating both the SFR and stellar mass in galaxies, as well as the contribution of the AGN to the power output of the host. Using the galaxy formation SAM GALFORM, we create mock galaxy SEDs using realistic star formation histories (SFH) and add an AGN of Type 1, Type 2, or intermediate type whose contribution to the bolometric luminosity can be variable. We perform an SED fitting of these catalogues with CIGALE assuming three different SFHs: a single- and double-exponentially-decreasing, and a delayed SFH. Constraining thecontribution of an AGN to the LIR (fracAGN) is very challenging for fracAGN<20%, with uncertainties of ~5-30% for higher fractions depending on the AGN type, while FIR and sub-mm are essential. The AGN power has an impact on the estimation of $M_*$ in Type 1 and intermediate type AGNs but has no effect for galaxies hosting Type 2 AGNs. We find that in the absence of AGN emission, the best estimates of $M_*$ are obtained using the double-exponentially-decreasing model but at the expense of realistic ages of the stellar population. The delayed SFH model provides good estimates of $M_*$ and SFR, with a maximum offset of 10% as well as better estimates of the age. Our analysis shows that the underestimation of the SFR increases with fracAGN for Type 1 systems, as well as for low contributions of an intermediate AGN type, but it is quite insensitive to the emission of Type 2 AGNs up to fracAGN~45%. Similarly the UV emission is critical in accurately retrieving the $M_*$ for Type 1 and intermediate type AGN, and the SFR of all of the three AGN types. We show that the presence of AGN emission introduces a scatter to the SFR-$M_*$ main sequence relation derived from SED fitting, which is driven by the uncertainties on $M_*$.
description: 20 pages, Accepted for publication in A&A
A Shape Matching Algorithm for Synthesizing Humanlike Enveloping Grasps
Creators: name: Li, Ying
name: Pollard, Nancy S.
Publisher: name: Figshare
Year: 2018
Subjects: subject: 89999 Information and Computing Sciences not elsewhere classified
subject: FOS: Computer and information sciences

description: Humanoid robots must be capable of interacting with the world using their hands. A variety of humanlike robot hands have been constructed, but it remains difficult to control these hands in a dexterous way. One challenge is grasp synthesis, where we wish to place the hand and control its shape to successfully grasp a given object. In this paper, we present a datadriven approach to grasp synthesis that treats grasping as a shape matching problem. We begin with a database of grasp examples. Given a model of a new object to be grasped (the query), shape features of the object are compared to shape features of hand poses in these examples in order to identify candidate grasps. For effective retrieval, we develop a novel shape matching algorithm that can accommodate the sparse shape information associated with hand pose and that considers relative placements of contact points and normals, which are important for grasp function. We illustrate our approach with examples using a model of the human hand
Foundations of statistical mechanics from symmetries of entanglement
Creators: name: Deffner, Sebastian
name: Zurek, Wojciech H.
Publisher: name: arXiv
Year: 2015
Subjects: subject: Quantum Physics (quant-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Mathematical Physics (math-ph)
subject: History and Philosophy of Physics (physics.hist-ph)
subject: FOS: Physical sciences

description: Envariance -- entanglement assisted invariance -- is a recently discovered symmetry of composite quantum systems. We show that thermodynamic equilibrium states are fully characterized by their envariance. In particular, the microcanonical equilibrium of a system $\mathcal{S} $ with Hamiltonian $H_\mathcal{S}$ is a fully energetically degenerate quantum state envariant under every unitary transformation. The representation of the canonical equilibrium then follows from simply counting degenerate energy states. Our conceptually novel approach is free of mathematically ambiguous notions such as ensemble, randomness, etc., and, while it does not even rely on probability, it helps to understand its role in the quantum world.
description: 12 pages; published version
A System Supporting Flexible Distributed Real-Time Music Processing
Creators: name: Dannenberg, Roger B
name: Lageweg, Patrick Van De
Publisher: name: Figshare
Year: 2018
Subjects: subject: 89999 Information and Computing Sciences not elsewhere classified
subject: FOS: Computer and information sciences

description: Local-area networks offer a means to interconnect personal
computers to achieve more processing, input, and output for
music and multimedia performances. The distributed, realtime
object system, Aura, offers a carefully designed
architecture for distributed real-time processing. In contrast
to streaming audio or MIDI-over-LAN systems, Aura offers
a general real-time message system capable of transporting
audio, MIDI, or any other data between objects, regardless
of whether objects are located in the same process or on
different machines. Measurements of audio synthesis and
transmission to another computer demonstrate about 20ms
of latency. Practical experience with protocols, system
timing, scheduling, and synchronization are discussed.