cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1 of NMR elucidation of nonproductive binding sites of lignin models with carbohydrate-binding module of cellobiohydrolase I
Creators: name: Tokunaga, Yuki
name: Nagata, Takashi
name: Kondo, Keiko
name: Katahira, Masato
name: Watanabe, Takashi
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Biotechnology
subject: Plant Biology
subject: Computational Biology

description: Additional file 1: Figure S1. TrCBM1 purity analysis using SDS-PAGE and MALDI-TOF-MS. Figure S2. Molecular weight distributions of the 13C-labeled and unlabeled β-O-4 lignin oligomer model compounds. Figure S3. 2D 1H–13C HSQC spectra of the short-chain 13C-labeled lignin oligomer models in the CSP experiment. Figure S4. Full 2D 1H–13C HSQC spectra from the CSP experiments. Figure S5. Full 2D 1H–13C HSQC spectrum of 350 μM TrCBM1. Figure S6. UV–vis spectra of the supernatant of the TrCBM1–His tag control used in the adsorption experiments. Figure S7. UV–vis spectra of the supernatants obtained in the adsorption experiments with the long- and short-chain models.
Selected Information Management Resources for Implementing New Knowledge Environments: An Annotated Bibliography
Creators: name: Garnett, Alex
name: Siemens, Ray
name: Leitch, Cara
name: Melone, Julie
Publisher: name: HSSCommons
Year: 2021
Subjects: Digital Humanities

description:
This annotated bibliography reviews scholarly work in the area of building and analyzing digital document collections with the aim of establishing a baseline of knowledge for work in the field of digital humanities. The bibliography is organized around three main topics: data stores, text corpora, and analytical facilitators. Each of these is then further divided into sub-topics to provide a broad snapshot of modern information management techniques for building and analyzing digital documents collections.
Scholarly Discourse and Computing Technology II: Perspectives on Pedagogy, Research, and Dissemination in the Humanities
Creators: name: Ray, Siemens
name: Winder, William
Publisher: name: HSSCommons
Year: 2021
Subjects: Digital Humanities

description:
The following essays have evolved from papers given at conference sessions held during the 1998 Congress of the Social Sciences and Humanities at the University of Ottawa, Canada, and jointly sponsored by the Consortium for Computers in the Humanities and the Association for Canadian College and University Teachers of English. These papers continue an exploration that the two associations have, over several years of aligned sessions, pursued together — an exploration that is given voice in earlier collections that we have had the pleasure of overseeing: Technologising the Humanities / Humanitising the Technologies (from the 1997 sessions, published in electronic form by Computing in the Humanities Working Papers [September 1998] and, in print, by Text Technology 8.2 [1998]: 1-63 and 8.3 [1998]: 1-76) and Scholarly Discourse and Computing Technology: Perspectives on Pedagogy, Research, and Dissemination in the Humanities (from the 1996 sessions, a similar joint special issue of the print journal Text Technology 6.3 [1996]: 137-216 and the electronic journal Computing in the Humanities Working Papers [April 1997]).
Exclusive $Z^0$ production in $ep$ and $eA$ collisions at high energies
Creators: name: Peccini, G. M.
name: Moriggi, L. S.
name: Machado, M. V. T.
Publisher: name: arXiv
Year: 2022
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: In this work the $k_{\perp}$-factorization formalism is applied to compute the exclusive $Z^0$ boson photoproduction in $ep$ and $eA$ collisions. The study is also extended to $pp$ and $AA$ processes. The nuclear effects are investigated considering heavy and light ions. Analytical models for the unintegrated gluon distribution are taken into account and the corresponding theoretical uncertainty is quantified. The analysis is done for electron-ion collisions at the Large Hadron-Electron Collider (LHeC), its high-energy upgrade (HE-LHeC) and at the Future Circular Collider (FCC) in lepton-hadron mode. Additionally, ultra-peripheral heavy ion collisions at future runs of the Large Hadron Collider (LHC) and at the FCC (hadron-hadron mode) are also considered.
description: 8 pages, 5 figures
Additional file 1 of Homozygous CDKN2A/B deletions in low- and high-grade glioma: a meta-analysis of individual patient data and predictive values of p16 immunohistochemistry testing
Creators: name: Noack, Darius
name: Wach, Johannes
name: Barrantes-Freer, Alonso
name: Nicolay, Nils H.
name: Güresir, Erdem
name: Seidel, Clemens
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Supplementary Material 1
Revolutionary Reading, Evolutionary Toolmaking: (Re)development of Scholarly Reading and Annotation Tools in Response to an Ever Changing Scholarly Climate
Creators: name: MacGregor, James
name: Joyce, Michael
name: Leitch, Cara
name: Siemens, Ray
name: Chiang, Chia-Ning
name: Kopak, Rick
name: Hirsch, Brett
Publisher: name: HSSCommons
Year: 2021
Subjects: Digital Humanities

description:
As the online scholarly landscape changes, so too must the tools used to traverse it. The Public Knowledge Project (PKP) Reading Tools provides readers a bridge from online scholarly content to a host of contextual information, to a number of discipline-specific search engines and databases, and to other tools. A lot has changed since it was originally released, such as the rise of Google Scholar as the de facto starting point for many novice (and not-so novice) researchers; the blurring line between desktop and web applications; and the increased professional use of social networking tools and websites. Recently, the University of Victoria’s Electronic Textual Cultures Lab (ETCL), in cooperation with the PKP, undertook a study to determine the role and value of the existing Reading Tools, particularly in the context of Humanities Computing. The ETCL has also developed a prototype Professional Reading Environment which has been the basis for substantial analysis. Rick Kopak and Chia-Ning Chiang at the University of British Columbia (UBC) have undertaken a broad survey of the online annotation landscape, and have written a proposal for developing an annotation system for PKP software. This paper discusses how, using this research as a base and in cooperation with UBC and the PKP, the ETCL has begun a large-scale redevelopment of the PKP Reading Tools, extending the current toolset to include new social networking and research tools, as well as a robust personal annotation system, making social annotation possible between small groups and the public.
Revisiting the Text of the Henry VIII Manuscript (BL Add Ms 31,922): An Extended Note
Creators: name: Siemens, Ray
Publisher: name: HSSCommons
Year: 2021
Subjects: subject: Literary Studies
subject: FOS: Languages and literature

description:
When we think of exemplary models illustrative of the nature of courtly literature and culture in Renaissance England, the early court of Henry VIII is not always the first to come to mind. By sheer force of voluminous scholarship alone, one might be more drawn to that of his daughter Elizabeth I and, once there, persuaded to consider those who assisted in the process of shaping the literary life of her court in a model suited to its monarch, and literary representations of that monarch in terms suitable to the court. Of this, there are many illustrations, among them the Cynthia of Edmund Spenser’s Colin Clout; the Britomart, Glorianna, and Belphoebe of The Faerie Queene; Sir Philip Sidney’s judicious judge at the centre of his Lady of May; and the figure—constructed and interpreted by Spenser, Mary Sidney, William Shakespeare, George Peele, John Davies, and others—of Astrea.2 What emerges from consideration in such a vein is the nature of the social fiction that is constructed and elaborated in literary terms by these literati and, when viewed in the larger context of court activity, the way in which literary constructions are reflected in (and, themselves, reflect) themes and trends in the larger fabric of court life.
Bayesian Data Analysis for Sky-averaged 21-cm Experiments in the Presence of Ionospheric Effects
Creators: name: Shen, Emma
name: Anstey, Dominic
name: Acedo, Eloy de Lera
name: Fialkov, Anastasia
Publisher: name: arXiv
Year: 2022
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: The ionosphere introduces chromatic distortions on low frequency radio waves, and thus poses a hurdle for 21-cm cosmology. In this paper we introduce time-varying chromatic ionospheric effects on simulated antenna temperature data of a global 21-cm data analysis pipeline, and try to detect the injected global signal. We demonstrate that given turbulent ionospheric conditions, more than 5\% error in our knowledge of the ionospheric parameters could lead to comparatively low evidence and high root-mean-square error (RMSE), suggesting a false or null detection. When using a constant antenna beam for cases that include data at different times, the significance of the detection lowers as the number of time samples increases. It is also shown that for observations that include data at different times, readjusting beam configurations according to the time-varying ionospheric conditions should greatly improve the significance of a detection, yielding higher evidences and lower RMSE, and that it is a necessary procedure for a successful detection when the ionospheric conditions are not ideal.
description: 8 pages, 7 figures, 7 tables
Sensitivity Study of Figure 4 to Changing Fractured Floe Size from Floes, the marginal ice zone and coupled wave-sea-ice feedbacks
Creators: name: Horvat, Christopher
Publisher: name: The Royal Society
Year: 2022
Subjects: subject: Oceanography
subject: FOS: Earth and related environmental sciences

description: Same as Fig. 4, but with fractured floe size set to 10 m.
NIHAO XXVII: Crossing the green valley
Creators: name: Blank, Marvin
name: Macciò, Andrea V.
name: Kang, Xi
name: Dixon, Keri L.
name: Soliman, Nadine H.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: The transition of high-mass galaxies from being blue and star forming to being red and dead is a crucial step in galaxy evolution, yet not fully understood. In this work, we use the NIHAO suite of galaxy simulations to investigate the relation between the transition time through the green valley and other galaxy properties. The typical green valley crossing time of our galaxies is approximately 400 Myr, somewhat shorter than observational estimates. The crossing of the green valley is triggered by the onset of AGN feedback and the subsequent shut down of star formation. Interestingly the time spent in the green valley is not related to any other galaxy properties, such as stellar age or metallicity, or the time at which the star formation quenching takes place. The crossing time is set by two main contributions: the ageing of the current stellar population and the residual star formation in the green valley. These effects are of comparable magnitude, while major and minor mergers have a negligible contribution. Most interestingly, we find the time that a galaxy spends to travel through the green valley is twice the $e$-folding time of the star formation quenching. This result is stable against galaxy properties and the exact numerical implementation of AGN feedback in the simulation. Assuming a typical crossing time of about one Gyr inferred from observations, our results imply that any mechanism or process aiming to quench star formation, must do it on a typical timescale of 500 Myr.
description: Accepted by MNRAS
Additional file 1 of Pulmonary lymphangiomatosis: insights into an ultra-rare disease
Creators: name: Polke, M.
name: Polke, N.
name: Piel, S.
name: Brunnemer, E.
name: Wälscher, J.
name: Buschulte, K.
name: Warth, A.
name: Heussel, C. P.
name: Eichinger, M.
name: Frankenstein, L.
name: Eichhorn, M.
name: Miliauskas, S.
name: Herth, F. J. F.
name: Kreuter, M.
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: Mathematical Sciences not elsewhere classified
subject: Marine Biology
subject: Cancer
subject: Hematology
subject: Virology

description: Supplementary Material 1. Case reports on pulmonary lymphangiomatosis. List of case reports (citations) on pulmonary lymphangiomatosis and pulmonary involvement of lymphangiomatosis respectively in PubMed Central® (PMC) 1/1/1984–21/10/2024.
Review of Netlytic
Creators: name: Meneses, Luis
Publisher: name: HSSCommons
Year: 2021
Subjects: Digital Media
Digital Humanities

description:
Developed by the Social Media Lab (socialmedialab.ca) at Ryerson University, Netlytic (netlytic.org) is a cloud-based text and social network analyzer that aims to help uncover social networks from online conversations. Netlytic has the ability to import data from a number of sources—including Twitter, Facebook, YouTube, Instagram, text files, RSS feeds, and cloud storage—and advocates for ease of use as it requires no programming skills. However, Netlytic does require some underlying knowledge about the structure of the data you are working with. All in all, I found Netlytic to excel at carrying out exploratory analysis. In my opinion, more focused and descriptive analysis would require a different set of more specialized tools. Netlytic integrates a data harvester with a streamlined user interface. The result: ease of use and convenience.
The CARMENES search for exoplanets around M dwarfs. Rotational variation in activity indicators of Ross 318, YZ CMi, TYC 3529-1437-1, and EV Lac
Creators: name: Schöfer, P.
name: Jeffers, S. V.
name: Reiners, A.
name: Zechmeister, M.
name: Fuhrmeister, B.
name: Lafarga, M.
name: Ribas, I.
name: Quirrenbach, A.
name: Amado, P. J.
name: Caballero, J. A.
name: Anglada-Escudé, G.
name: Bauer, F. F.
name: Béjar, V. J. S.
name: Cortés-Contreras, M.
name: Alonso, E. Díez
name: Dreizler, S.
name: Guenther, E. W.
name: Herbort, O.
name: Johnson, E. N.
name: Kaminski, A.
name: Kürster, M.
name: Montes, D.
name: Morales, J. C.
name: Pedraz, S.
name: Tal-Or, L.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: The CARMENES instrument is searching for periodic radial-velocity (RV) variations of M dwarfs, which are induced by orbiting planets. However, there are other potential sources of such variations, including rotational modulation caused by stellar activity. We aim to investigate four M dwarfs (Ross 318, YZ CMi, TYC 3529-1437-1, and EV Lac) with different activity levels and spectral sub-types. Our goal is to compare the periodicities seen in 22 activity indicators and the stellar RVs, and to examine their stability over time. For each star, we calculated GLS periodograms of pseudo-equivalent widths of chromospheric lines, indices of photospheric bands, the differential line width as a measure of the width of the average photospheric absorption line, the RV, the chromatic index that describes the wavelength dependence of the RV, and CCF parameters. We also calculated periodograms for subsets of the data and compared our results to TESS photometry. We find the rotation periods of all four stars to manifest themselves in the RV and photospheric indicators, particularly the TiO~7050 index, whereas the chromospheric lines show clear signals only at lower activity levels. For EV Lac and TYC 3529-1437-1, we find episodes during which indicators vary with the rotation period, and episodes during which they vary with half the rotation period, similarly to photometric light curves. The changing periodicities reflect the evolution of stellar activity features on the stellar surface. We therefore conclude that our results not only emphasise the importance of carefully analysing indicators complementary to the RV in RV surveys, but they also suggest that it is also useful to search for signals in activity indicators in subsets of the dataset, because an activity signal that is present in the RV may not be visible in the activity indicators all the time, in particular for the most active stars.
description: 8 pages + 9 pages appendix, 5+4 figures, 1+4 tables, accepted for publication in A&A
Observation of anomalous spectral downshifting of waves in the Okhotsk Sea Marginal Ice Zone
Creators: name: Waseda, Takuji
name: Alberello, Alberto
name: Nose, Takehiko
name: Toyota, Takenobu
name: Kodaira, Tsubasa
name: Fujiwara, Yasushi
Publisher: name: The Royal Society
Year: 2022
Subjects: subject: Oceanography
subject: FOS: Earth and related environmental sciences
subject: 91504 Fluidisation and Fluid Mechanics
subject: FOS: Other engineering and technologies
subject: 20301 Acoustics and Acoustical Devices; Waves
subject: FOS: Physical sciences

description: A table and a figure providing supplementary observational data.
Effect of decay of the final states on the probabilities of the Landau-Zener transitions in multistate non-integrable models
Creators: name: Malla, Rajesh K.
name: Raikh, M. E.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: For a Landau-Zener transition in a two-level system, the probability for a particle, initially in the first level, to survive the transition and to remain in the first level, does not depend on whether or not the second level is broadened [V. M. Akulin and W. P. Schleicht, Phys. Rev. A {\bf 46}, 4110 (1992)]. In other words, the seminal Landau-Zener result applies regardless of the broadening of the second level. The same question for the multistate Landau-Zener transition is addressed in the present paper. While for integrable multistate models, where the transition does not involve interference of the virtual paths, it can be argued that the independence of the broadening persists, we focus on non-integrable models involving interference. For a simple four-state model, which allows an analytical treatment, we demonstrate that the decay of the excited states affects the survival probability provided that {\em the widths of the final states are different}.
description: 6 pages and 2 figures
Constraining high-redshift stellar-mass primordial black holes with next-generation ground-based gravitational-wave detectors
Creators: name: Ng, Ken K. Y.
name: Franciolini, Gabriele
name: Berti, Emanuele
name: Pani, Paolo
name: Riotto, Antonio
name: Vitale, Salvatore
Publisher: name: arXiv
Year: 2022
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The possible existence of primordial black holes in the stellar mass window has received considerable attention because their mergers may contribute to current and future gravitational-wave detections. Primordial black hole mergers, together with mergers of black holes originating from Population~III stars, are expected to dominate at high redshifts ($z\gtrsim 10$). However the primordial black hole merger rate density is expected to rise monotonically with redshift, while Population~III mergers can only occur after the birth of the first stars. Next-generation gravitational-wave detectors such as Cosmic Explorer~(CE) and Einstein Telescope~(ET) can access this distinctive feature in the merger rates as functions of redshift, allowing for a direct measurement of the abundance of the two populations, and hence for robust constraints on the abundance of primordial black holes. We simulate four-months worth of data observed by a CE-ET detector network and perform hierarchical Bayesian analysis to recover the merger rate densities. We find that if the Universe has no primordial black holes with masses of $\mathcal{O}(10M_{\odot})$, the projected upper limit on their abundance $f_{\rm PBH}$ as a fraction of dark matter energy density may be as low as $f_{\rm PBH}\sim \mathcal{O}({10^{-5}})$, about two orders of magnitude lower than current upper limits in this mass range. If instead $f_{\rm PBH}\gtrsim 10^{-4}$, future gravitational wave observations would exclude $f_{\rm PBH}=0$ at the 95\% credible interval.
description: 8 pages (2 pages of appendices), 5 figures
Additional file 1 of A scoping review of the Clinical Frailty Scale
Creators: name: Church, Sophie
name: Rogers, Emily
name: Rockwood, Kenneth
name: Theou, Olga
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Neuroscience
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1. Supplementary figures & tables.
SIEL-Newsletter-Summer-2022-–-No.-51.pdf
Creators: name: Malkawi, Bashar H.
Publisher: name: figshare
Year: 2022
Subjects: subject: 180117 International Trade Law
subject: FOS: Law

description: Bashar Malkawi and Christina C. Benson. Iraq Back on Track: The Case for Expediting WTO Accession of “Fragile and Conflict Affected” (“FCA”) Countries, 47 North Carolina Journal of International Law 133-191 (2022)
Additional file 1 of Pertussis vaccination in adults: a behavioral study of physicians from the US, France, and Germany
Creators: name: Middleton, Donald
name: Clark, Liana
name: Mosnier, Anne
name: Heininger, Ulrich
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: Supplementary Material 1
Research Collaboration as “Layers of Engagement”: INKE in Year Four
Creators: name: Siemens, Lynne
name: Team, INKE
Publisher: name: HSSCommons
Year: 2022
Subjects: Digital humanities

description:
Many academic teams and granting agencies undergo a process of reflection at a project’s completion to understand lessons learned and develop best practice guidelines. These reviews focus on the actual research work accomplished with little discussion of the relationships and processes involved. As a result, some hard-earned lessons are forgotten or minimized. To address, the Implementing New Knowledge Environments (INKE) project provides an opportunity to explore the changing nature of collaboration over a long-term project’s life. Now at the fourth year, team members reflect on the deepening and strengthening collaboration, with layers of engagement between the various individuals and sub-research areas, which has translated into productivity and external validation of the collaboration and its work. The article concludes with recommendations for other teams.
And then they were two: detection of non-thermal radio emission from the bow shocks of two runaway stars
Creators: name: Moutzouri, M.
name: Mackey, J.
name: González, C. Carrasco
name: Gong, Y.
name: Brose, R.
name: Zargaryan, D.
name: Toalá, J. A.
name: Menten, K. M.
name: Gvaramadze, V. V.
name: Rugel, M. R.
Publisher: name: arXiv
Year: 2022
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Winds from massive stars have recently been deemed promising sites for investigating relativistic particle acceleration. Particularly, the resulting bow shock from the interaction of the winds of runaway stars with interstellar matter has been observed at multiple wavelengths. Here we investigate the O4If star, BD+433654, the bow shock of which is, so far, the only one proven to radiate both thermally and non-thermally at radio frequencies. We also consider NGC7635 as a bow shock candidate and examine its apex for indications of thermal and non-thermal radio emission. We observed both sources with the VLA at 4-8 GHz and 8-12 GHz, and with the Effelsberg telescope at 4-8 GHz. We analysed data from both telescopes individually and combined, obtained their spectral index maps and calculated their Spectral Energy Distributions. We present the first high-resolution maps of radio emission from NGC7635. We find that both emit non-thermal emission in the radio regime, with the clearest evidence for NGC7635. Our results are less conclusive for BD+433654, as the emission from its bow shock becomes weaker and fainter at higher radio frequencies. Our results extend the previous radio results for the BD+433654 bow shock to higher frequencies. Modelling of our data for both sources shows that accelerated electrons at the wind termination shock are a plausible source for the non-thermal radio emission, but energetics arguments suggest that any non-thermal X-ray and $γ$-ray emission could be significantly below existing upper limits. Enhanced synchrotron emission from compressed Galactic cosmic rays in the radiative bow shock could also explain the radio emission from the BD+433654 bow shock but not NGC7635. Non-detection of point-like radio emission from BD+433654 puts an upper limit on the mass-loss rate of the star that is lower than values quoted in the literature. [abridged]
description: 17 pages, 13 figures
Additional file 2 of ‘Mothers moving towards empowerment’ intervention to reduce stigma and improve treatment adherence in pregnant women living with HIV in Botswana: study protocol for a pragmatic clinical trial
Creators: name: Ohemaa B. Poku
name: Ho-Foster, Ari R.
name: Patlo Entaile
name: Supriya Misra
name: Haitisha Mehta
name: Shathani Rampa
name: Goodman, Melody
name: Arscott-Mills, Tonya
name: Eschliman, Evan
name: Jackson, Valerie
name: Tadele Melese
name: Becker, Timothy D.
name: Eisenberg, Marlene
name: Link, Bruce
name: Go, Vivian
name: Opondo, Philip Renison
name: Blank, Michael B.
name: Yang, Lawrence H.
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2. Informed Consent Form
Supplementary tables and figures to support the main text from Long-term changes in avian biomass and functional diversity within disturbed and undisturbed Amazonian rainforest
Creators: name: Luther, David A.
name: Justin, W.
name: Jirinec, Vitek
name: Wolfe, Jared D.
name: Rutt, Cameron L.
name: Bierregaard, Richard O.
name: Lovejoy, Thomas E.
name: Stouffer, Philip C.
Publisher: name: The Royal Society
Year: 2022
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Recent long-term studies in protected areas have revealed the loss of biodiversity, yet the ramifications for ecosystem health and resilience remain unknown. Here, we investigate how the loss of understory birds, in the lowest stratum of the forest, affects avian biomass and functional diversity in the Amazon rainforest. Across approximately 30 years in the Biological Dynamics of Forest Fragments Project, we used a historical baseline of avian communities to contrast the avian communities in today's primary forest with those in modern disturbed habitat. We found that in primary rainforest, the reduced abundance of insectivorous species led to reduced functional diversity, but no reduction of biomass, indicating that species with similar functional traits are less likely to coexist in modern primary forests. Because today's forests contain fewer functionally redundant species—those with similar traits—we argue that avian communities in modern primary Amazonian rainforests are less resilient, which may ultimately disrupt the ecosystem in dynamic and unforeseen ways.
title: Environmental Remediation - Information Summary
Creators: name: Klein, Andrew
name: Snape, Ian
name: Schaefer, Carlos
name: Aislabie, Jackie
name: Delille, Daniel
name: De Azevedo Jurelevicius, Diogo
Publisher: name: Antarctic Environments Portal
Year: 2018

description: Annex III to The Protocol on Environmental Protection to the Antarctic Treaty requires that past and present terrestrial waste disposal sites and abandoned work sites be remediated unless removal by practical means would result in greater adverse environmental impacts. Past remediation has focused on clean-up of former waste sites, removal of disused infrastructure and other debris and removal/remediation of contaminated soils. Remediation efforts have been hindered by lack of comprehensive remediation guidelines and clean-up protocols. High costs, logistical difficulties and environmental risks involved in extracting, transporting and disposing of waste present additional barriers to remediation of Antarctic contaminated sites.
Additional file 1 of The impact of hearing impairment on early academic achievement in Aboriginal children living in remote Australia: a data linkage study
Creators: name: Su, Jiunn-Yih
name: Guthridge, Steven
name: He, Vincent Yaofeng
name: Howard, Damien
name: Leach, Amanda Jane
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Neuroscience
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 1.
Inferences on relations between distant supermassive black holes and their hosts complemented by the galaxy fundamental plane
Creators: name: Silverman, John
name: Li, Junyao
name: Ding, Xuheng
Publisher: name: arXiv
Year: 2022
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: The realization of fundamental relations between supermassive black holes and their host galaxies would have profound implications in astrophysics. To add further context to studies of their co-evolution, an investigation is carried out to gain insight as to whether quasars and their hosts at earlier epochs follow the local relation between black hole (BH) mass and stellar velocity dispersion. We use 584 SDSS quasars at 0.2 < z < 0.8 with black hole measurements, and properties of their hosts from the Hyper Suprime-Cam Subaru Strategic Program. An inference of the stellar velocity dispersion is achieved for each based on the stellar mass and size of the host galaxy by using the galaxy mass fundamental plane for inactive galaxies at similar redshifts. In agreement with past studies, quasars occupy an elevated position from the local M_BH-sigma relation, considered as a flattening, while maintaining ratios of M_BH/M* consistent with local values. Based on a forward-modeling of the sample, we demonstrate that an evolving intrinsic M_BH-sigma relation can match the observations. However, we hypothesize that these changes may be a reflection of a non-evolving intrinsic relationship between M_BH and M*. Reassuringly, there are signs of migration onto the local M_BH-sigma for galaxies that are either massive, quiescent or compact. Thus, the majority of the bulges of quasar hosts at high redshift are in a development stage and likely to align with their black holes onto the mass scaling relation at later times.
description: 9 pages, 6 figures, submitted to ApJ, comments welcome
Additional file 1 of ‘Mothers moving towards empowerment’ intervention to reduce stigma and improve treatment adherence in pregnant women living with HIV in Botswana: study protocol for a pragmatic clinical trial
Creators: name: Ohemaa B. Poku
name: Ho-Foster, Ari R.
name: Patlo Entaile
name: Supriya Misra
name: Haitisha Mehta
name: Shathani Rampa
name: Goodman, Melody
name: Arscott-Mills, Tonya
name: Eschliman, Evan
name: Jackson, Valerie
name: Tadele Melese
name: Becker, Timothy D.
name: Eisenberg, Marlene
name: Link, Bruce
name: Go, Vivian
name: Opondo, Philip Renison
name: Blank, Michael B.
name: Yang, Lawrence H.
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. SPIRIT 2013 Checklist
Identification, Cloning, Expression, Purification and Kinetic Characterization of Adenosine-Guanosine Preferring Nucleoside Hydrolase From Trichomonas vaginalis
Creators: name: Benzie, Annie Laurie
Publisher: name: Adelphi University Honors College
Year: 2011
Subjects: Nucleoside hydrolase
trichomoniasis
Parasitology

description: Trichomonas vaginalis is a single-celled protozoan parasite that attacks the epithelial tissue of the human urogenital system and causes the sexually transmitted infection trichomoniasis. These enzymes that this parasite uses to survive have no mammalian equivalent and therefore have been identified as potential chemotherapeutic targets for antiparasitic drug and vaccine development. This thesis details over three years of research on a nucleoside hydrolase from T. vaginalis, from an amino acid sequence in a database, to an insert in a cloning vector and finally as a characterized nucleoside hydrolase. Completion of studies on the specificity, mechanism and prevalence of nucleoside hydrolase activity in T. vaginalis has the potential of producing information that can be used in drug design of a new class of antiparasitic agents to treat or prevent trichomoniasis.
Lass uns rausgehen. Soziales Lernen mit der Klasse nach outdoor- und erlebnispädagogischem Ansatz
Creators: name: Wenzler, Tamara
Publisher: name: Interkantonale Hochschule für Heilpädagogik
Year: 2023
Subjects: Sonderpädagogik
Masterarbeit
Erlebnispädagogik
Selbsteinschätzung

description: In der Arbeit wird das Projekt „Erlebnispädagogiktage“ vorgestellt und ausgewertet. Ziel des Projekts war, herauszufinden, ob und wie sich die Selbsteinschätzungen ausgewählter sozialer und personaler Kompetenzen von Jugendlichen der Sekundarstufe 1 (1. Klasse, Realschule) nach Durchführung von Erlebnispädagogiktagen verändern. Hierfür wurde eine quantitative Erhebung mittels zweier Fragebögen vor und nach der Durchführung des Programms durchgeführt und ausgewertet. Grundlage des Projekts bildete der outdoor- und erlebnispädagogische Ansatz. Wenn sich, so die These, die Selbsteinschätzungen zu den verschiedenen Kompetenzen durch das Programm positiv verändern, die Lernenden also mehr Vertrauen in ihre Kompetenzen erlangen, kann das ein Ausgangspunkt dafür sein, den erlebnispädagogischen Ansatz an der Schule dauerhaft zu verankern. Durch die Arbeit konnte nachgewiesen werden, dass sich die Erlebnispädagogiktage positiv auf die Selbsteinschätzungen auswirken.
Remediating William Blake: Unbinding the Network Architectures of Blake's Songs
Creators: name: Saklofske, Jon
Publisher: name: HSSCommons
Year: 2022
Subjects: Digital humanities

description:
The poetic parallels, figurative overlaps, and thematic frictions between the pages of William Blake's dynamic Songs of Innocence and of Experience establish a local area network architecture that is both complementary and antagonistic to the traditional pathways generated by/through bookspace. While this tension between connective paradigms contributes to the revolutionary vitality of Blake's work, its full implications have been stultified by generations of reproduction that privileged the organizational paradigms related to the printed book and its circulatory systems. However, flexible and fluid digital distribution, primarily via the William Blake Archive and its participation in NINES, extends the material bounds of Blake's printed work into a wide area network. This not only transcends Blake's distributive frustrations, but the sharing and communication functions engendered by network architectures encourage a more explicit recognition, re-imagining and extension of the networked features and applications of Blake's multimedia Songs. Unfortunately, as Blake's work has migrated to the digital arena, traditional doors of print-based perception have often been reinforced by unimaginative and anachronistic interfaces. NewRadial, a data visualization application, more fully illuminates the network architecture at the heart of Blake's Romantic creativity, and demonstrates the ways in which our current technological networks can extend interpretative possibility.
Hot-lines topology and the fate of the spin resonance mode in three-dimensional unconventional superconductors
Creators: name: Chen, Fei
name: Fernandes, Rafael M.
name: Christensen, Morten H.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: In the quasi-two-dimensional (quasi-2D) copper- and iron-based superconductors, the onset of superconductivity is accompanied by a prominent peak in the magnetic spectrum at momenta close to the wave-vector of the nearby antiferromagnetic state. Such a peak is well described in terms of a spin resonance mode, i.e., a spin-1 exciton theoretically predicted for quasi-2D superconductors with a sign-changing gap. The same theories, however, indicate that such a resonance mode should be absent in a three-dimensional (3D) system with a spherical Fermi surface. This raises the question of the fate of the spin resonance mode in layered unconventional superconductors that are not strongly anisotropic, such as certain heavy-fermion compounds and potentially the newly discovered nickelate superconductor NdNiO$_2$. Here, we use the random-phase-approximation to calculate the dynamical spin susceptibility of 3D superconductors with a $d_{x^2-y^2}$-wave gap symmetry and corrugated cylindrical-like Fermi surfaces. By varying the out-of-plane hopping anisotropy $t_z/t$, we demonstrate that the appearance of a spin resonance mode is determined by the topology of the hot lines -- i.e. lines on the Fermi surface that are connected by the magnetic wave-vector. For an in-plane antiferromagnetic wave-vector, the hot lines undergo a topological transition from open lines to closed loops at a critical $t_z/t$ value. The closed hot lines cross the nodal superconducting lines, making the spin resonance mode overdamped and incoherent. In contrast, for an out-of-plane antiferromagnetic wave-vector, the hot lines remain open and the spin resonance mode remains sharp. We discuss the experimental implications of our results for the out-of-plane dispersion of the spin resonance mode and, more generally, for inelastic neutron scattering experiments on unconventional superconductors.
description: 12 pages, 11 figures
Impact and detectability of spin-tidal couplings in neutron star inspirals
Creators: name: Castro, Gonçalo
name: Gualtieri, Leonardo
name: Maselli, Andrea
name: Pani, Paolo
Publisher: name: arXiv
Year: 2022
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: The gravitational wave signal from a binary neutron star merger carries the imprint of the deformability properties of the coalescing bodies, and then of the equation of state of neutron stars. In current models of the waveforms emitted in these events, the contribution of tidal deformation is encoded in a set of parameters, the tidal Love numbers. More refined models include tidal-rotation couplings, described by an additional set of parameters, the rotational tidal Love numbers, which appear in the waveform at $6.5$ post-Newtonian order. For neutron stars with spins as large as $\sim0.1$, we show that neglecting tidal-rotation couplings may lead to a significant error in the parameter estimation by third-generation gravitational wave detectors. By performing a Fisher matrix analysis we assess the measurability of rotational tidal Love numbers, showing that their contribution in the waveform could be measured by third-generation detectors. Our results suggest that current models of tidal deformation in late inspiral should be improved in order to avoid waveform systematics and extract reliable information from gravitational wave signals observed by next generation detectors.
description: 11 pages, 4 figures
Additional file 1 of Molecular evolutionary and structural analysis of human UCHL1 gene demonstrates the relevant role of intragenic epistasis in Parkinson’s disease and other neurological disorders
Creators: name: Nawaz, Muhammad Saqib
name: Asghar, Razia
name: Nashaiman Pervaiz
name: Ali, Shahid
name: Hussain, Irfan
name: Peiqi Xing
name: Yiming Bao
name: Abbasi, Amir Ali
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1. Supplementary Figures.
Prediction of drag components on rough surfaces using effective models
Creators: name: Jain, Sahaj
name: Sudhakar, Y.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: Owing to the multiscale nature and the consequent high computational cost associated with simulations of flows over rough surfaces, effective models are being developed as a practical means of dealing with such flows. Existing effective models focus primarily on accurately predicting interface velocities using slip length. Moreover, they are concerned mainly with flat interfaces and do not directly address the drag computation. In this work, we formulate the Transpiration-Resistance model in polar coordinates and address the challenge of computing drag components on rough surfaces. Like slip length, we introduce two constitutive parameters called shear and pressure correction factors that encompass information about how the total drag is partitioned into viscous and pressure components. Computation of these non-empirical parameters does not necessitate solving additional microscale problems; they can be obtained from the same microscale problem used for the slip-length calculation. We demonstrate the effectiveness of the proposed parameters for the Couette flow over rough surfaces. Moreover, using the flow over a rough cylinder as an example, we present the accuracy of predicting interface velocity and drag components by comparing the effective model results with those obtained from geometry-resolved simulations. Numerical simulations presented in this paper prove that we can accurately capture both viscous and pressure drag over rough surfaces for flat- and circular-interface problems by using the proposed constitutive parameters.
description: 20 pages, 8 figures
Additional file 1 of Predictive validity of a novel non-invasive estimation of effective shunt fraction in critically ill patients
Creators: name: Chang, Emma M.
name: Bretherick, Andrew
name: Drummond, Gordon B.
name: Baillie, J Kenneth
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics

description: Supplementary information. Includes the derivation of oxygenation measures and method of predicting PaO2, as well as optimisation of assumed variables using the test dataset. (PDF 227 kb)
Additional file 2 of Integrated analyses of multi-omic data derived from paired primary lung cancer and brain metastasis reveal the metabolic vulnerability as a novel therapeutic target
Creators: name: Duan, Hao
name: Ren, Jianlan
name: Wei, Shiyou
name: Yang, Zhenyu
name: Li, Chuan
name: Wang, Zhenning
name: Li, Meichen
name: Wei, Zhi
name: Liu, Yu
name: Wang, Xiuqi
name: Lan, Hongbin
name: Zeng, Zhen
name: Xie, Maodi
name: Xie, Yuan
name: Wu, Suwen
name: Hu, Wanming
name: Guo, Chengcheng
name: Zhang, Xiangheng
name: Liang, Lun
name: Yu, Chengwei
name: Mou, Yanhao
name: Jiang, Yu
name: Li, Houde
name: Sugarman, Eric
name: Deek, Rebecca A.
name: Chen, Zexin
name: Li, Tao
name: Chen, Yaohui
name: Yao, Maojin
name: Chen, Likun
name: Liu, Lunxu
name: Zhang, Gao
name: Mou, Yonggao
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2: Fig. S1: Analysis pipeline for integrated multi-omics data in this study. Fig. S2: Mutation landscape in paired primary lung cancer and brain metastases. Fig. S3: Comparative tumor mutational burden in lung cancer and brain metastases. Fig. S4: Copy number alterations in primary lung cancer versus brain metastases. Fig. S5: Principal component analysis and pathway enrichment in lung cancer brain metastasis. Fig. S6: Immune pathway correlations and lymphocyte composition in lung cancer brain metastases. Fig. S7: Enrichment analysis of mitochondrial and immune pathways in independent brain metastasis cohort. Fig. S8: Immunohistochemical profiling of proliferation and immune markers in brain metastases.
CORRELATIVE LANGUAGE LEARNING EXERCISES FOR LEARNERS' COMMUNICATIVE ABILITY
Creators: name: KOMILOVA MOHITABON RAMISH QIZI
name: SHUKUROV RAHMATILLO MIRZATILLAYEVICH
Publisher: name: Zenodo
Year: 2024
Subjects: Communicative, Correlative exercises, Correlative Learning, Motivation, Self-Confidence.

description: Abstract

Learners’ communicative in English language has been unsatisfactory due to the factors that affect their self-confidence and motivation to speak. However, the problem persisted even though ways were used to overcome the lack of communicative ability among learners in Malaysia. Therefore, this study was conducted to address learners’ perceptions of correlative language learning exercises in improving English-speaking ability. The study aimed to analyse the effectiveness of the correlative language learning exercises in motivating learners to speak in language classroom. A set of questionnaires containing two sections with 30 questions was administered. There were 50 primary school learners selected randomly to participate in this study. The results were collected and presented in the form of tables. The finding showed that self-confidence, motivation and learning environment affect the learners’ English language speaking ability and the results indicated that correlative language learning exercises are able to overcome problems pertaining to communicative in language classroom. In conclusion, correlative language learning exercises improved the learners’ English language speaking ability.
Additional file 3 of Molecular evolutionary and structural analysis of human UCHL1 gene demonstrates the relevant role of intragenic epistasis in Parkinson’s disease and other neurological disorders
Creators: name: Nawaz, Muhammad Saqib
name: Asghar, Razia
name: Nashaiman Pervaiz
name: Ali, Shahid
name: Hussain, Irfan
name: Peiqi Xing
name: Yiming Bao
name: Abbasi, Amir Ali
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3. Complete list of protein sequences used in this study.