cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
BRCA and Pancreatic Cancer
Creators: name: Brennan, Gregory T
name: Relias, Valerie
name: Saif, Muhammad Wasif
Publisher: name: JOP. Journal of the Pancreas
Year: 2013
Subjects: Genes, BRCA1; Genes, BRCA2; Mutation; PALB2 protein, human; Pancreatic Neoplasms; Poly(ADP-ribose) Polymerases

description: Germline mutations in BRCA genes have been associated with pancreatic cancer. Laboratory and clinical data suggest that patients with BRCA mutations may be more responsive to therapy consisting of conventional chemotherapy with a poly(ADP-ribose) polymerase inhibitor (PARPi). The most recent data from the 2013 American Society of Clinical Oncology (ASCO) Annual Meeting will be reviewed (Abstracts #11024 and #TPS4144).
description: JOP. Journal of the Pancreas, Vol 14, N° 4 (2013): July - p. 304-474
Adraria Villiers 1956
Creators: name: Allsopp, Peter G.
name: Schoolmeesters, Paul
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Adraria

description: Adraria Villiers, 1956
[1 species].
Type species Adraria monodi Villiers, 1956, by original designation.
description: Published as part of Allsopp, Peter G. & Schoolmeesters, Paul, 2024, All genera of the world: Subfamilies Prototroginae, Cretoscarabaeinae, Dynamopodinae, Electrorubesopsinae, Phaenomeridinae, Orphninae, Allidiostomatinae, Aclopinae, Lichniinae, Melolonthinae, Oncerinae, Podolasiinae, Sericinae, Sericoidinae (Animalia: Arthropoda: Insecta: Coleoptera: Scarabaeidae), pp. 104-175 in Megataxa 12 (1) on page 106, DOI: 10.11646/megataxa.12.1.2, http://zenodo.org/record/14984437
Tumor Markers in Pancreatic Cancer: 2013
Creators: name: Shah, Urvi Ajay
name: Saif, Muhammad Wasif
Publisher: name: JOP. Journal of the Pancreas
Year: 2013
Subjects: CA-19-9 Antigen; Pancreatic Neoplasms; Prognosis

description: Amongst the tumor markers for pancreatic cancer CA 19-9 is being used most widely and newer clinically useful applications of this tumor marker are being researched. We will discuss four abstracts presented at the American Society of Clinical Oncology (ASCO) Annual Meeting which contribute to expanding the application of CA 19-9 measurement (Abstracts #4042, #4058, #e15082, #e15146).
description: JOP. Journal of the Pancreas, Vol 14, N° 4 (2013): July - p. 304-474
Vlogging from the war zone : Mohammed Nabbous and international citizen journalism in Libya
Creators: name: Beckett, Amanda Alexis Lindsey
Publisher: name: University of British Columbia
Year: 2013

description: This thesis focuses on Mohammed Nabbous, a Libyan citizen who produced widely circulated reports during the first month of the revolution which overthrew Muammar Gaddafi, after his over forty years in power. Nabbous’ work is a generative example of citizen journalism, and what Media Scholar Ethan Zuckerman terms bridge blogging. Nabbous was one of many contributors who overcame barriers to communication, including government blocks to Internet access to provide vital on-the-ground information to outside news agencies during the Libyan uprising. Though there are significant differences, what occurred in Libya can be situated and contextualized regionally as part of a series of revolutions in the Middle East in 2010-2011 – a period often referred to as “the Arab Spring.” Nabbous’ role as source and citizen journalist provides rich terrain in which to analyze emerging definitions of journalism and debates over the role of and need for foreign correspondents. Nabbous was killed while covering a firefight in Benghazi only one month into what became an eight month long civil war in Libya. In the week after his death, some of those who eulogized Nabbous on Twitter debated whether his contributions merited acknowledgement as works of journalism, and whether Nabbous had in fact been a journalist. This thesis analyzes 500 of the most widely distributed Twitter messages which eulogize Nabbous, and draws on the wider context of debates about professionalization, news media, changes to the news industry, and journalism ethics.
Orubesa Reitter 1895
Creators: name: Allsopp, Peter G.
name: Schoolmeesters, Paul
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Orubesa

description: Orubesa Reitter, 1895
[6 species and 1 additional subspecies].
Type species Orubesa perforata Reitter, 1895, by monotypy.
description: Published as part of Allsopp, Peter G. & Schoolmeesters, Paul, 2024, All genera of the world: Subfamilies Prototroginae, Cretoscarabaeinae, Dynamopodinae, Electrorubesopsinae, Phaenomeridinae, Orphninae, Allidiostomatinae, Aclopinae, Lichniinae, Melolonthinae, Oncerinae, Podolasiinae, Sericinae, Sericoidinae (Animalia: Arthropoda: Insecta: Coleoptera: Scarabaeidae), pp. 104-175 in Megataxa 12 (1) on page 106, DOI: 10.11646/megataxa.12.1.2, http://zenodo.org/record/14984437
Novel Agents and Future Prospects in the Treatment of Pancreatic Adenocarcinoma
Creators: name: Sarris, Evangelos G
name: Syrigos, Kostas N
name: Saif, Muhammad Wasif
Publisher: name: JOP. Journal of the Pancreas
Year: 2013
Subjects: Adenocarcinoma; Antibodies, Monoclonal; gemcitabine; Molecular Targeted Therapy; Pancreatic Neoplasms

description: Pancreatic adenocarcinoma is one of the most aggressive malignancies and the fourth leading cause of cancer-related mortality in the United States. The majority of patients are diagnosed at advanced stage with inoperable locally advanced tumors or metastatic disease, and palliative chemotherapy remains the best therapeutic option for these patients. Despite intensive clinical and pre-clinical research over the last few years, the combination of the anti-metabolite drug gemcitabine with the targeted agent erlotinib, is considered standard of care in the treatment of these patients, with only minimal or modest efficacy. Therefore, novel therapeutic approaches are currently under clinical investigation in an attempt to produce more definite results for this fatal disease. In this paper we summarize five most interesting research abstracts as presented at the 2013 American Society of Clinical Oncology (ASCO) Annual Meeting. In two studies, nimotuzumab, a monoclonal antibody against epidermal growth factor receptor (EGFR) (Abstract #4009) and bavituximab, a monoclonal antibody against phosphatidylserine (Abstract #4054) are tested in combination with gemcitabine in patients with advanced pancreatic cancer. Abstract #4012 is a study of gemcitabine with vismodegib, a novel hedgehog pathway inhibitor, whereas in Abstract #4035, toxicity and efficacy results of sunitinib in combination with gemcitabine in patients with pancreatic adenocarcinoma are presented. Lastly, safety results of pimasertib, a novel mitogen-activated protein kinase kinase (MEK) inhibitor, combined with the standard gemcitabine are presented in Abstract #4041.
description: JOP. Journal of the Pancreas, Vol 14, N° 4 (2013): July - p. 304-474
R Code For Analysis Of Homoscedasticity In Clinical Trials
Creators: name: Cortés, Jordi
Publisher: name: Zenodo
Year: 2017
Subjects: Homoscedasticity
Constant effect
Clinical trial
Personalized medicine

description: This R code corresponds to the main analysis of the article entitle "Does evidence support the high expectations placed in precision medicine? A bibliographic review" published in the F1000 journal.
Diabetes and Pancreatic Cancer
Creators: name: El-Jurdi, Najla Hatem
name: Saif, Muhammad Wasif
Publisher: name: JOP. Journal of the Pancreas
Year: 2013
Subjects: Diabetes Mellitus; Glucose; Metformin; Pancreas; Pancreatic Neoplasms

description: There is great emphasis on early identification of high risk patients for developing pancreatic cancer in an attempt to reduce the burden of the fourth leading cause of cancer death in the United States. Abstracts presented at the 2013 American Society of Clinical Oncology (ASCO) Annual Meeting highlighted and supported the relationship between pancreatic cancer and diabetes mellitus and Abstract #4039 showed that hemoglobin-A1c at the time of diagnosis correlates with disease stage and predicts survival among all stages of pancreatic cancer patients. Abstracts #4044 and #e15110 also presented in 2013 ASCO Annual Meeting showed that metformin treatment serves as a positive prognosticator, especially in patients with diabetes mellitus diagnosed within 2 years of pancreatic cancer and in stage 3 pancreatic cancer patients with diabetes mellitus.
description: JOP. Journal of the Pancreas, Vol 14, N° 4 (2013): July - p. 304-474
Additional file 1 of Effect of castration timing and weaning strategy on the taxonomic and functional profile of ruminal bacteria and archaea of beef calves
Creators: name: Diaz, Gerardo R.
name: Gaire, Tara N.
name: Ferm, Peter
name: Case, Lacey
name: Caixeta, Luciano S.
name: Goldsmith, Timothy J.
name: Armstrong, Joe
name: Noyes, Noelle R.
Publisher: name: figshare
Year: 2023
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences

description: Supplementary Material 1: Contains supplementary tables S1-S5 and supplementary figures 1-5
Dynamopus Semenov 1895
Creators: name: Allsopp, Peter G.
name: Schoolmeesters, Paul
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Dynamopus

description: Dynamopus Semenov, 1895.
Type species Dynamopus athleta Semenov, 1895, by monotypy. Synonymy by Petrovitz (1968).
description: Published as part of Allsopp, Peter G. & Schoolmeesters, Paul, 2024, All genera of the world: Subfamilies Prototroginae, Cretoscarabaeinae, Dynamopodinae, Electrorubesopsinae, Phaenomeridinae, Orphninae, Allidiostomatinae, Aclopinae, Lichniinae, Melolonthinae, Oncerinae, Podolasiinae, Sericinae, Sericoidinae (Animalia: Arthropoda: Insecta: Coleoptera: Scarabaeidae), pp. 104-175 in Megataxa 12 (1) on page 106, DOI: 10.11646/megataxa.12.1.2, http://zenodo.org/record/14984437
Xanthelaeus Fairmaire 1897
Creators: name: Allsopp, Peter G.
name: Schoolmeesters, Paul
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Xanthelaeus

description: Xanthelaeus Fairmaire, 1897d.
Type species Xanthelaeus plicifrons Fairmaire, 1897, by monotypy. Synonymy by Arrow (1911b).
description: Published as part of Allsopp, Peter G. & Schoolmeesters, Paul, 2024, All genera of the world: Subfamilies Prototroginae, Cretoscarabaeinae, Dynamopodinae, Electrorubesopsinae, Phaenomeridinae, Orphninae, Allidiostomatinae, Aclopinae, Lichniinae, Melolonthinae, Oncerinae, Podolasiinae, Sericinae, Sericoidinae (Animalia: Arthropoda: Insecta: Coleoptera: Scarabaeidae), pp. 104-175 in Megataxa 12 (1) on page 106, DOI: 10.11646/megataxa.12.1.2, http://zenodo.org/record/14984437
title: Sulphur By-Product: A Potential Indicator of Early Dental Plaque-Induced Gingival Disease Activity: A Pilot Study
Creators: name: Zhou, Hui
Publisher: name: Old Dominion University Libraries
Year: 2001

description: The purpose of this study was to determine the relationship between volatile sulfide compounds and gingival health status, and to identify if volatile sulfide compounds can detect early dental plaque-induced gingival disease, using an experimental gingivitis model. The sample consisted of 12 subjects between 19 and 28 years, with a healthy gingival status. A split-mouth design utilizing only the mandibular arch was used. A baseline full-mouth periodontal probing status was measured. After baseline data collection and for two weeks, subjects refrained from brushing and flossing one randomly selected half of the mandibular arch. At baseline and six subsequent appointments, gingival inflammation, bleeding on probing, and sulfide levels were obtained using the Gingival Index and the Diamond Probe/Perio 2000 System. The Pearson correlation test determined the relationship between sulfide levels and gingival health status. The Wilcoxon test was used to compare the differences in gingival inflammation, bleeding and sulfide levels between the brushing and non-brushing sides at each interval.

The non-brushing side data revealed that sulfide levels correlated significantly with the Gingival Index and bleeding on probing scores. Sulfide level is the most sensitive indicator among three dependent variables in detecting early clinical dental plaque-induced gingival disease. Results suggest that volatile sulfide compounds may be an early gingival disease indicator.
Exact propagators on the lattice with applications to diffractive effects
Creators: name: Sadurní, Emerson
Publisher: name: arXiv
Year: 2012
Subjects: subject: Quantum Physics (quant-ph)
subject: Other Condensed Matter (cond-mat.other)
subject: FOS: Physical sciences

description: The propagator of the discrete Schrödinger equation is computed and its properties are revealed through a Feynman path summation in discrete space. Initial data problems such as diffraction in discrete space and continuous time are studied analytically by the application of the new propagator. In the second part of this paper, the analogy between time propagation and 2D scattering by 1D obstacles is explored. New results are given in the context of diffraction by edges within a periodic medium. A connection with tight-binding arrays and photonic crystals is indicated.
description: Final version with two appendices. Published in J. Phys. A: Math. Theor
Aturidae Thor 1900
Creators: name: Martin, Peter
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Aturidae

description: Aturidae Thor, 1900   Diagnosis. See Smith (1984) and Martin (2006). This large family includes more than 50 genera.
description: Published as part of Martin, Peter, 2016, Larval morphology of benthic and interstitial water mites (Acari: Hydrachnidia) from a Luxembourgian stream, pp. 451-480 in Zootaxa 4139 (4) on page 468, DOI: 10.11646/zootaxa.4139.4.1, http://zenodo.org/record/265489
Thinorycter
Creators: name: Allsopp, Peter G.
name: Schoolmeesters, Paul
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Thinorycter

description: Thinorycter Semenov-Tjan-Shansky & Reikhardt, 1925
[5 species].
Type species Thinorycter chlamydatus Semenov-Tjan-Shansky & Reikhardt, 1925, by original designation.
description: Published as part of Allsopp, Peter G. & Schoolmeesters, Paul, 2024, All genera of the world: Subfamilies Prototroginae, Cretoscarabaeinae, Dynamopodinae, Electrorubesopsinae, Phaenomeridinae, Orphninae, Allidiostomatinae, Aclopinae, Lichniinae, Melolonthinae, Oncerinae, Podolasiinae, Sericinae, Sericoidinae (Animalia: Arthropoda: Insecta: Coleoptera: Scarabaeidae), pp. 104-175 in Megataxa 12 (1) on page 106, DOI: 10.11646/megataxa.12.1.2, http://zenodo.org/record/14984437
Electrorubesopsis Bai & Wang in Li et al. 2018
Creators: name: Allsopp, Peter G.
name: Schoolmeesters, Paul
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Hybosoridae
Electrorubesopsis

description: † Electrorubesopsis Bai & Wang in Li et al., 2018
[1 species].
Type species Electrorubesopsis beuteli Bai & Wang, 2018, by original designation.
description: Published as part of Allsopp, Peter G. & Schoolmeesters, Paul, 2024, All genera of the world: Subfamilies Prototroginae, Cretoscarabaeinae, Dynamopodinae, Electrorubesopsinae, Phaenomeridinae, Orphninae, Allidiostomatinae, Aclopinae, Lichniinae, Melolonthinae, Oncerinae, Podolasiinae, Sericinae, Sericoidinae (Animalia: Arthropoda: Insecta: Coleoptera: Scarabaeidae), pp. 104-175 in Megataxa 12 (1) on page 106, DOI: 10.11646/megataxa.12.1.2, http://zenodo.org/record/14984437
Additional file 1 of Gut microbiota mediated the therapeutic efficacies and the side effects of prednisone in the treatment of MRL/lpr mice
Creators: name: Wang, Mingzhu
name: Zhu, Zhengyang
name: Lin, Xiaoying
name: Li, Haichang
name: Wen, Chengping
name: Bao, Jie
name: He, Zhixing
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 1.
Cymboptera Ohaus 1923
Creators: name: Allsopp, Peter G.
name: Schoolmeesters, Paul
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Cymboptera

description: Cymboptera Ohaus, 1923
[1 species].
Type species Cymboptera peringueyi Ohaus, 1923, by monotypy.
description: Published as part of Allsopp, Peter G. & Schoolmeesters, Paul, 2024, All genera of the world: Subfamilies Prototroginae, Cretoscarabaeinae, Dynamopodinae, Electrorubesopsinae, Phaenomeridinae, Orphninae, Allidiostomatinae, Aclopinae, Lichniinae, Melolonthinae, Oncerinae, Podolasiinae, Sericinae, Sericoidinae (Animalia: Arthropoda: Insecta: Coleoptera: Scarabaeidae), pp. 104-175 in Megataxa 12 (1) on page 106, DOI: 10.11646/megataxa.12.1.2, http://zenodo.org/record/14984437
Improving the efficiency of extended ensemble simulations: The accelerated weight histogram method
Creators: name: Lidmar, Jack
Publisher: name: arXiv
Year: 2011
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: We propose a method for efficient simulations in extended ensembles, useful, e.g., for the study of problems with complex energy landscapes and for free energy calculations. The main difficulty in such simulations is the estimation of the a priori unknown weight parameters needed to produce flat histograms. The method combines several complementary techniques, namely, a Gibbs sampler for the parameter moves, a reweighting procedure to optimize data use, and a Bayesian update allowing for systematic refinement of the free energy estimate. In a certain limit the scheme reduces to the 1/t algorithm of B.E. Belardinelli and V.D. Pereyra [Phys. Rev. E 75, 046701 (2007)]. The performance of the method is studied on the two-dimensional Ising model, where comparison with the exact free energy is possible, and on an Ising spin glass.
description: 5 pages
Pseudophilotes vicrama
Creators: name: Aistleitner, Eyjolf
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lycaenidae
Pseudophilotes
Pseudophilotes vicrama

description: Pseudophilotes vicrama (MOORE, 1865)
 B e l e g e: Austria, Niederösterreich, Mödling, 24.7.1910, leg. Anonymus. Steiermark, Gleinalpe, St. Stefan ob Leoben, Hinterlobming, 11.5.1957.- Oberes Murtal, Feistritz bei Knittelfeld, Gulsenberg bei Preg, 25.7.1949, 3.8.1950, 2.+ 13.6.1951, 18.5.1954, 26.7.1956, 4.+ 11.5.1957, 23.7.1957; alle leg. Meier.
V e r b r e i t u n g: Chorotyp eurosibirisch; Mittel- und Südosteuropa, Vorderasien (Türkei), Zentralasien (Kasachstan, Tian Shan), SW-Sibirien (Altaj), NW-China, W-Tibet und NW-Indien.
description: Published as part of Aistleitner, Eyjolf, 2021, Zur Chorologie und Faunistik der Tagfalter in den Ost- und Südalpen 1. Tagfalter (Papilionoidea) aus der Sammlung von Herbert Meier † sowie Daten aus den Sammlungen des Entomologischen Forschungsmuseums EFMEA in Feldkirch, pp. 787-867 in Linzer biologische Beiträge 52 (2) on pages 812-813, DOI: 10.5281/zenodo.10086880
How to Distinguish between Specular and Retroconfigurations for Andreev Reflection in Graphene Rings
Creators: name: Schelter, Jörg
name: Trauzettel, Björn
name: Recher, Patrik
Publisher: name: arXiv
Year: 2011
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We numerically investigate Andreev reflection in a graphene ring with one normal conducting and one superconducting lead by solving the Bogoliubov--de Gennes equation within the Landauer-Büttiker formalism. By tuning chemical potential and bias voltage, it is possible to switch between regimes where electron and hole originate from the same band (retroconfiguration) or from different bands (specular configuration) of the graphene dispersion, respectively. We find that the dominant contributions to the Aharonov-Bohm conductance oscillations in the subgap transport are of period $h/2e$ in retroconfiguration and of period $h/e$ in specular configuration, confirming the predictions obtained from a qualitative analysis of interfering scattering paths. Because of the robustness against disorder and moderate changes to the system, this provides a clear signature to distinguish both types of Andreev reflection processes in graphene.
description: 5 pages, 5 figures. arXiv admin note: substantial text overlap with arXiv:1201.6200
Open circle maps: Small hole asymptotics
Creators: name: Dettmann, Carl
Publisher: name: arXiv
Year: 2011
Subjects: subject: Chaotic Dynamics (nlin.CD)
subject: Dynamical Systems (math.DS)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: We consider escape from chaotic maps through a subset of phase space, the hole. Escape rates are known to be locally constant functions of the hole position and size. In spite of this, for the doubling map we can extend the current best result for small holes, a linear dependence on hole size h, to include a smooth h^2 ln h term and explicit fractal terms to h^2 and higher orders, confirmed by numerical simulations. For more general hole locations the asymptotic form depends on a dynamical Diophantine condition using periodic orbits ordered by stability.
description: This version has a new section investigating different hole locations. Now 9 pages, 3 figures
Neuroendocrine Tumors: Treatment Updates
Creators: name: Khagi, Simon
name: Saif, Muhammad Wasif
Publisher: name: JOP. Journal of the Pancreas
Year: 2013
Subjects: bevacizumab; Carcinoid Tumor; everolimus; Neuroendocrine Tumors; Octreotide; pasireotide; Somatostatin; temsirolimus

description: Neuroendocrine tumors of the gastroenteropancreatic tract remain a difficult array of neoplasia to treat. Treatment of advanced and metastatic gastroenteropancreatic neuroendocrine tumors has traditionally been difficult with few systemic treatment options. In 2011, two new targeted therapies, everolimus and sunitinib were approved for treatment of pancreatic neuroendocrine tumor. The approval of these agents led to an enhanced interest in exploring novel agents. This can be evidenced by the fact that this is the first year that ASCO assembled related abstracts under a separate title of neuroendocrine tumor. The annual American Society of Clinical Oncology (ASCO) conference in 2013 presented four abstracts (#4030, #4031, #4032, #4136) that shed light on new therapeutic options that help target the unique pathways involved in these neuroendocrine malignancies.
description: JOP. Journal of the Pancreas, Vol 14, N° 4 (2013): July - p. 304-474
Search for second generation scalar leptoquarks in pp collisions at sqrt(s) = 7 TeV with the ATLAS detector
Creators: name: ATLAS Collaboration
Publisher: name: arXiv
Year: 2012
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: The results of a search for the production of second generation scalar leptoquarks are presented for final states consisting of either two oppositely charged muons and at least two jets or a muon plus missing transverse momentum and at least two jets. A total of 1.03/fb integrated luminosity of proton-proton collision data produced by the Large Hadron Collider at sqrt(s) = 7 TeV and recorded by the ATLAS detector is used for the search. The event yields in the signal regions are found to be consistent with the Standard Model background expectations. The production of second generation leptoquarks is excluded for a leptoquark mass m_LQ < 594 (685) GeV at 95% confidence level, for a branching ratio of 0.5 (1.0) for leptoquark decay to a muon and a quark.
description: 9 pages plus author list (24 pages total), 5 figures, 1 table, revised author list, matches published EPJC version
Pancreatic Cancer Stem Cells: Their Role in Pancreatic Cancer Patient Outcomes and What Is Future?
Creators: name: Habib, Muzzamal
name: Saif, Muhammad Wasif
Publisher: name: JOP. Journal of the Pancreas
Year: 2013
Subjects: Pancreatic Neoplasms; Stem Cells; Survival

description: There is emerging evidence that stem cells might be playing an important role when it comes to cancer aggressiveness, metastasis, recurrence, resistance to chemotherapy and overall survival in hematologic malignancies as well as solid tumors including pancreatic adenocarcinoma. We review Abstract #e15058 presented at the 2013 ASCO Annual Meeting in Chicago by Andrikou et al.. Pancreatic cancer patients over-expressing pancreatic cancer stem cell markers were associated with aggressive tumors and worse survival.
description: JOP. Journal of the Pancreas, Vol 14, N° 4 (2013): July - p. 304-474
Additional file 1 of Muscle quality index and cardiovascular disease among US population-findings from NHANES 2011–2014
Creators: name: Chen, Yanlin
name: Lin, Weidong
name: Fu, Lu
name: Liu, Huiyi
name: Jin, Shuyu
name: Ye, Xingdong
name: Pu, Sijia
name: Xue, Yumei
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Supplementary Material 1
Treatment of Poorly Differentiated Neuroendocrine Carcinoma of the Pancreas
Creators: name: Gupta, Anumeha
name: Duque, Marvin
name: Saif, Muhammad Wasif
Publisher: name: JOP. Journal of the Pancreas
Year: 2013
Subjects: Carcinoma, Neuroendocrine; Digestive System Neoplasms; Drug Therapy; Etoposide; everolimus

description: Poorly differentiated neuroendocrine carcinoma is a rare malignancy that remains a challenge to treat. Poorly differentiated neuroendocrine carcinoma occurs at an incidence of 2% annually in United States. The current standard of care is based largely upon retrospective data. There remains a need for large prospective cooperative group trials in the management of poorly differentiated neuroendocrine carcinoma. In this paper, we will review abstract #e15096 (Paclitaxel, carboplatin, and etoposide (TCE) in advanced poorly differentiated neuroendocrine carcinoma) by Loeffler et al. and #e15071 (Poorly differentiated neuroendocrine carcinoma (NEC G3): prognostic factors and potential novel targets) by Heetfeld et al. presented at the 2013 ASCO Annual Meeting highlighting treatment options in first and second lines for poorly differentiated neuroendocrine carcinoma.
description: JOP. Journal of the Pancreas, Vol 14, N° 4 (2013): July - p. 304-474
Dipolar Gases in Coupled One-Dimensional Lattices
Creators: name: Bauer, Marianne
name: Parish, Meera M.
Publisher: name: arXiv
Year: 2012
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: FOS: Physical sciences

description: We consider dipolar bosons in two tubes of one-dimensional lattices, where the dipoles are aligned to be maximally repulsive and the particle filling fraction is the same in each tube. In the classical limit of zero inter-site hopping, the particles arrange themselves into an ordered crystal for any rational filling fraction, forming a complete devil's staircase like in the single tube case. Turning on hopping within each tube then gives rise to a competition between the crystalline Mott phases and a liquid of defects or solitons. However, for the two-tube case, we find that solitons from different tubes can bind into pairs for certain topologies of the filling fraction. This provides an intriguing example of pairing that is purely driven by correlations close to a Mott insulator.
description: 5 pages, 4 figures
Additional file 1 of High diagnostic yield of endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) in the diagnosis of adolescent pulmonary tuberculosis
Creators: name: Geweniger, Anne
name: Janda, Ales
name: Eder, Kristin
name: Fressle, Roland
name: Kannan, Cecil Varna
name: Fahnenstich, Hubert
name: Elze, Mirjam
name: Müller, Christoph
name: Henneke, Philipp
name: Hufnagel, Markus
name: Elling, Roland
Publisher: name: figshare
Year: 2021
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology
subject: 110309 Infectious Diseases

description: Additional file 1: Table S1. Clinical and radiologic characteristics of all patients (n=34). Table S2. Technical details on the EBUS-TBNA procedures (n=21). Table S3. Radiological findings of patients undergoing EBUS (n=14).
Quantum states of the spacetime, and formation of black holes in AdS
Creators: name: Cantcheff, Marcelo Botta
Publisher: name: arXiv
Year: 2012
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We argue that a non-perturbative description of quantum gravity should involve two (non-interacting) copies of a dual field theory on the boundary, and describe the states of the spacetimes accordingly. So, for instance, a complete description of the asymptotically Anti-de-Sitter spacetimes is given by two copies of the conformal field theory associated to the global AdS spacetime. We also argue that, in this context, gravitational collapse and formation of a black hole may be described by unitary evolution of the dual non-perturbative degrees of freedom.
description: 10 pages, work awarded with Honorable Mention, 2012 Awards for Essays on Gravitation, Gravity Research Foundation. Some typos corrected. Published in Int. J. Mod. Phys. D (2012)
Oxychirus Quedenfeldt 1888
Creators: name: Allsopp, Peter G.
name: Schoolmeesters, Paul
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Oxychirus

description: Oxychirus Quedenfeldt, 1888
[6 species].
Type species Oxychirus semisericeus Quedenfeldt, 1888, by monotypy.
description: Published as part of Allsopp, Peter G. & Schoolmeesters, Paul, 2024, All genera of the world: Subfamilies Prototroginae, Cretoscarabaeinae, Dynamopodinae, Electrorubesopsinae, Phaenomeridinae, Orphninae, Allidiostomatinae, Aclopinae, Lichniinae, Melolonthinae, Oncerinae, Podolasiinae, Sericinae, Sericoidinae (Animalia: Arthropoda: Insecta: Coleoptera: Scarabaeidae), pp. 104-175 in Megataxa 12 (1) on page 106, DOI: 10.11646/megataxa.12.1.2, http://zenodo.org/record/14984437
Measuring the Invisible Higgs Width at the 7 and 8 TeV LHC
Creators: name: Bai, Yang
name: Draper, Patrick
name: Shelton, Jessie
Publisher: name: arXiv
Year: 2011
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: The LHC is well on track toward the discovery or exclusion of a light Standard Model (SM)-like Higgs boson. Such a Higgs has a very small SM width and can easily have large branching fractions to physics beyond the SM, making Higgs decays an excellent opportunity to observe new physics. Decays into collider-invisible particles are particularly interesting as they are theoretically well motivated and relatively clean experimentally. In this work we estimate the potential of the 7 and 8 TeV LHC to observe an invisible Higgs branching fraction. We analyze three channels that can be used to directly study the invisible Higgs branching ratio at the 7 TeV LHC: an invisible Higgs produced in association with (i) a hard jet; (ii) a leptonic Z; and (iii) forward tagging jets. We find that the last channel, where the Higgs is produced via weak boson fusion, is the most sensitive, allowing branching fractions as small as 40% to be probed at 20 inverse fb for masses in the range between 120 and 170 GeV, including in particular the interesting region around 125 GeV. We provide an estimate of the 8 TeV LHC sensitivity to an invisibly-decaying Higgs produced via weak boson fusion and find that the reach is comparable to but not better than the reach at the 7 TeV LHC. We further estimate the discovery potential at the 8 TeV LHC for cases where the Higgs has substantial branching fractions to both visible and invisible final states.
description: 23 pages, 7 figures. v2: version published in JHEP. 8 TeV analysis added
Establishing methods to screen novel small molecules targeting insulin-like growth factor/insulin-like growth factor binding protein interaction
Creators: name: Alsabban, Abdulrahman Essam
Publisher: name: University of British Columbia
Year: 2013

description: Insulin-like growth factors (IGFs) are important systemic mediators of growth and survival that suppress apoptosis and promote cell cycle progression, angiogenesis and metastatic activities in various cancers by activating IGF-IR tyrosine kinase-mediated signaling. These effects depend on the bioavailability of IGFs, which is regulated by IGF binding proteins (IGFBPs). Increased IGFBP-2 and IGFBP-5 expression observed in castration-resistant prostate cancer is thought to promote tumor progression by enhancing IGF-mediated signaling. IGFBPs have cooperative carboxy-terminal and amino-terminal low and a high affinity IGF binding sites. I hypothesize that blocking the high affinity IGF binding site can affect the bioavailability of IGFs to target tissues and thus be used for treatment of various IGF-responsive diseases including prostate cancer. I initially characterized immunologic reagents capable of being used in sandwich ELISA formats to detect IGF-I and IGFBP-5 and attempted several configurations to establish an IGF-I/IGFBP-5 “bridged” sandwich ELISA platform to measure association and dissociation of IGF-I/IGFBP-5 complex formation. The inability of all bridged ELISA formats tested to measure IGF-I/IGFBP-5 binding, lead me to developed a Bio-Layer Interferometry-based assay that measures IGF-I/ IGFBP-5 binding kinetics that will allow for screening of factors that can affect this intermolecular interaction. I demonstrated that biotinylated IGF-I bound to streptavidin-coated biosensors can be used to measure binding of recombinant IGFBP-5 [2.24 nm shift in optical density (Response)]. I also demonstrated that IGF-I could efficiently disrupt this interaction (0.21 nm shift), while the amino-terminal IGF-I mutant, E3R, exhibits an intermediate competitive activity (1.47 nm shift) and insulin exhibits a low competitive activity (1.83 nm shift). In addition, I demonstrated that IGF-I can competitively disrupted this interaction, resulting in a dissociation rate constant (Kdis 1.5-³ 1/s), In contrast, the amino terminal IGF-I mutant, E3R binds with an intermediate affinity (Kdis 5.6-⁴ 1/s), and buffer free sample results in a (Kdis) of 1.5-⁴ (1/s). These results demonstrate the capacity of this BLI-based assay to differentiate relative competitive activity of compounds that target the high affinity IGF-I binding site of IGFBPs and establish a platform to screen for factors that might be developed as rationale therapeutics to disrupt sequestration of IGF-I by IGFBPs.
Additional file 1 of Sequential gene expression analysis of cervical malignant transformation identifies RFC4 as a novel diagnostic and prognostic biomarker
Creators: name: Zhang, Jianwei
name: Meng, Silu
name: Wang, Xiaoyan
name: Wang, Jun
name: Fan, Xinran
name: Sun, Haiying
name: Ning, Ruoqi
name: Xiao, Bing
name: Li, Xiangqin
name: Jia, Yao
name: Kong, Dongli
name: Chen, Ruqi
name: Wang, Changyu
name: Ma, Ding
name: Li, Shuang
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Additional file 1: Figure S1. The quality control of selected datasets. Figure S2. The flow of sample selection and immunohistochemistry (IHC), related to Table S2. Figure S3. Pathway enrichment and comparison. Figure S4. Human T-cell leukemia virus 1 (HTLV-1) infection signaling pathway map. Figure S5. Differential expression of total genes in each comparison group of the discovery datasets. Figure S6. Correlation between hub gene expression and severity of cervical lesion in the discovery datasets. Figure S7. Schematic diagram of immune scoring criteria, related to Table S5. Figure S8. Assessment of the relationship between hub gene expression and clinical parameters in SCC patients from the TCGA cohort. Figure S9. Univariate and multivariate survival analysis for PFI/DFS in SCC patients, related to Fig. 6. Figure S10. The illustration of the tissue microarray (HUteS154Su01; TMA) from Outdo Biotech. Co., Ltd. Table S1. Microarray datasets analyzed in this study. Table S2. Histology information of all tissue specimens, related to Figure S2. Table S3. Summary of DEGs and Gene Sets1&2. Table S4. Antibodies used for immunohistochemical staining. Table S5. Immunohistochemical scoring system for noninvasive squamous epithelia. Table S6. Clinical characteristics of the collected cohorts for survival analysis. Table S10. Summary of the hub gene expression related to cancer progression. Table S11. The summary of immunohistochemical scoring results. Table S12. Characteristics of studies assessing p16INK4a, Ki-67, TOP2A and ProExC immunohistochemically. Table S13. Concordance analysis between IHC biomarkers. Table S14. Sensitivity, specificity, PPV, NPV, and AUC of six IHC biomarkers for detecting HSIL and HSIL+. Table S15. Comparison of positive rates of single and combined IHC biomarkers in different cervical lesions (based on sections with p16INK4a, Ki-67, TOP2A and RFC4 evaluated simultaneously). Table S16. Diagnostic performance of serial and parallel interpretation of IHC biomarker combinations for detecting HSIL and HSIL+ compared to TOP2A and RFC4 alone.
Additional file 1 of Change of the vaginal microbiome with oral contraceptive therapy in women with polycystic ovary syndrome: a 6-month longitudinal cohort study
Creators: name: Hong, Xiang
name: Qin, Pengfei
name: Gao, Liting
name: Huang, Lingling
name: Shi, Yong
name: Peng, Danhong
name: Wang, Bei
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Table S1. The medians and quartiles for different hormone levels in different visits. Figure S1. PCoA plot based on Jaccard distance. Figure S2. Latent class of the vaginal microbiome based on Lactobacillus relative abundance and their features based on LEfSe analysis. Figure S3. PCoA plot based on Bray-Curtis distance with ASV table. Figure S4. The average relative abundances of different genera with ASV table. Figure S5. Histograms of the vaginal microbiota composition at baseline, month 3, and month 6 based on ASV table. Figure S6. Latent class of the vaginal microbiome based on Lactobacillus relative abundance with ASV table.
Thermodynamics of the two-component Fermi gas with unequal masses at unitarity
Creators: name: Daily, K. M.
name: Blume, D.
Publisher: name: arXiv
Year: 2011
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: FOS: Physical sciences

description: We consider mass-imbalanced two-component Fermi gases for which the unequal-mass atoms interact via a zero-range model potential with a diverging s-wave scattering length $a_s$, i.e., with $1/a_s=0$. The high temperature thermodynamics of the harmonically trapped and homogeneous systems are examined using a virial expansion approach up to third order in the fugacity. We find that the universal part of the third-order virial coefficient associated with two light atoms and one heavy atom is negative, while that associated with two heavy and one light atom changes sign from negative to positive as the mass ratio $κ$ increases, and diverges when Efimov physics sets in at $κ=13.61$. By examining the Helmholtz free energy, we find that the equilibrium polarization of the trapped and homogeneous systems is 0 for $κ=1$, but finite for $κ\ne 1$ (with a majority of heavy particles). Compared to the equilibrium polarization of the non-interacting system, the equilibrium polarization at unitarity is increased for the trapped system and decreased for the homogeneous system. We find that unequal-mass Fermi gases are stable for all polarizations.
description: 14+2 pages, 14 figures
Additional file 1 of The value of innovation: association between improvements in survival of advanced and metastatic non-small cell lung cancer and targeted and immunotherapy
Creators: name: Ramagopalan, Sreeram
name: Leahy, Thomas P.
name: Ray, Joshua
name: Wilkinson, Samantha
name: Sammon, Cormac
name: Subbiah, Vivek
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer

description: Additional file 1. One year survival probability plots. Description: One year survival probability plots for each cohort.
Eliminating ambiguities for quantum corrections to strings moving in $AdS_4\times \mathbb{CP}^3$
Creators: name: Lopez-Arcos, Cristhiam
name: Nastase, Horatiu
Publisher: name: arXiv
Year: 2012
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We apply a physical principle, previously used to eliminate ambiguities in quantum corrections to the 2 dimensional kink, to the case of spinning strings moving in $AdS_4\times \mathbb{CP}^3$, thought of as another kind of two dimensional soliton. We find that this eliminates the ambiguities and selects the result compatible with AdS/CFT, providing a solid foundation for one of the previous calculations, which found agreement. The method can be applied to other classical string "solitons".
description: 18 pages, latex; references added, comments added at end of section 4, a few words changed; footnote added on page 15
Phaenomeris Hope 1833
Creators: name: Allsopp, Peter G.
name: Schoolmeesters, Paul
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Phaenomeris

description: Phaenomeris Hope, 1833 [5 species].
Type species Phaenomeris magnifica Hope, 1833, by monotypy.
Name placed on the Official List of Specific Names in Zoology (International Commission on Zoological Nomenclature 1962).
description: Published as part of Allsopp, Peter G. & Schoolmeesters, Paul, 2024, All genera of the world: Subfamilies Prototroginae, Cretoscarabaeinae, Dynamopodinae, Electrorubesopsinae, Phaenomeridinae, Orphninae, Allidiostomatinae, Aclopinae, Lichniinae, Melolonthinae, Oncerinae, Podolasiinae, Sericinae, Sericoidinae (Animalia: Arthropoda: Insecta: Coleoptera: Scarabaeidae), pp. 104-175 in Megataxa 12 (1) on page 106, DOI: 10.11646/megataxa.12.1.2, http://zenodo.org/record/14984437
Pharmacogenomics in Pancreatic Adenocarcinoma: New Data and Their Clinical Implications
Creators: name: Strimpakos, Alexios S
name: Syrigos, Kostas N
name: Saif, Muhammad Wasif
Publisher: name: JOP. Journal of the Pancreas
Year: 2013
Subjects: Antineoplastic Agents; gemcitabine; Pancreatic Neoplasms; Pharmacogenetics

description: Despite advances and investments in translation research, clinical trials and health service in general, there is no significant impact on the survival of most patients diagnosed with advanced pancreatic adenocarcinoma. It is broadly recognized though that there is a small minority of patients who really benefit from particular treatments for reason usually not well understood. Light to this fact is gradually shed by developments in the field of pharmacogenomics, which plays pivotal role in what we call individualized medicine. In that perspective, it is of most importance to present the significant developments in pharmacogenomics announced in the recent 2013 American Society of Clinical Oncology Annual Meeting. First, the predictive role of hENT1, which codes for a gemcitabine transporter into cells, was highlighted and might help us decide whether we benefit from gemcitabine or 5-fluorouracil in the adjuvant setting (Abstract #4006). Second, authors presented the negative predictive role of SPARC stroma and cytoplasmic expression in patients treated with adjuvant gemcitabine (within the CONCO-001 study) as they reported poor outcome of those having high expression, not seen in patients on observation (Abstract #4016). Finally, a study which might be a basis for future strategies and as great food for scientific thought suggested that selection of cytotoxic treatment based on gene expression profiling is feasible in clinical practice and may help improve treatment efficacy as well as predict for drug resistance (Abstract #4017). Of course, there is a long way to go before implementation of these genomic findings, with the exception of hENT1 which seems to be close for clinical use.
description: JOP. Journal of the Pancreas, Vol 14, N° 4 (2013): July - p. 304-474
Solitary excitations in one-dimensional spin chains
Creators: name: Wöllert, Anton
name: Honecker, Andreas
Publisher: name: arXiv
Year: 2012
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We study the real-time evolution of solitary excitations in 1-d quantum spin chains using exact diagonalization (ED) and the density-matrix renormalization group (DMRG). The underlying question of this work is the correspondence between classical solitons and solitons in quantum mechanics. While classical solitons as eigensolutions of non-linear wave equations are localized and have a sharp momentum, this is not possible in the corresponding quantum case due to the linearity of the Schrödinger equation or seen in a more pictorial way, because of the uncertainty relation. For the case of the XXZ model it is shown that the real-time evolution of quantum wave packets accompanied by spreading is in qualitative accordance with the one predicted by classical solitons.
description: 6 pages including 5 figures and 2 tables
Additional file 1 of Comparative analysis of the allergenic characteristics and serodiagnostic potential of recombinant chitinase-like protein-5 and -12 from Sarcoptes scabiei
Creators: name: Shen, Nengxing
name: Chen, Yuhang
name: Wei, Wenrui
name: Xiong, Lang
name: Tao, Yuanyuan
name: Xiao, Jie
name: Liu, Song
name: He, Xue
name: Du, Xiaodi
name: Gu, Xiaobin
name: Xie, Yue
name: Xu, Jing
name: Peng, Xuerong
name: Yang, Guangyou
Publisher: name: figshare
Year: 2021
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 1. The diameter and score of wheals and flush, and pathological damage grades caused by allergy.