Anopheles Gambiae Resources
Creators: name: Apps, BCBB
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 310204
subject: Genomics and transcriptomics
classificationCode: 310206
subject: Sequence analysis

description: In this page you can find several links to Anopheles Gambiae Resources data. If the links below do not work, the users can download the Anopheles-gambiae.zip file and click on the Anopheles-gambiae.html file to be able to see the links in the browser and download the data in theirs computers.Clusterized set of 243,505 publicly available ESTsThis database is being used to manually annotate genes. It includes the Pasteur set of 35,575 clones published in 2005 [PubMed] found in CoreNucleotide, not DBest. Column AN reveals discrepancies between assembled EST and Ensembl predictions. Column BB reveals discrepancies between EST and Jun Li's Glimmer predictions. This database is also mapped to Affymetrix chip array resources at UC Irvine (column GN); it also breaks down clusters by their library of origin (column FZ), helping to identify tissue-specific genes.<br>Download Ag-ESTs-july-2007.tar.gz ( 2 GB)*<br>Download fasta file of consensus/singletons (8MB)AnogoldThis database contains 3,038 mostly full length CDS, or truncated CDS containing either starting Met or Stop codon of genes, obtained from EST databases, and used by Jun Li and Osvaldo Marinotti to train Glimmer or to obtain 5' or 3' UTR's. This database was done with EST set available in Jan/2006 and will be expanded with above set.Download Anogold Excel file (70 MB)<br>Download fasta files (2 MB)In silico microsatellite databaseExcel database of Primer3-designed primers flanking genomic microsatellite sequences, used by Tovi Lehman and Nora Besansky.<br>Download Excel files with primers (12 MB)Ag-Glimmer-XcelA database of An. gambiae proteins obtained by combinational algorithm of Glimmer trained on the Anogold set (from 2 above) and Ensembl protein predictions, done by Jun Li. This is a follow up of Li J, Riehle MM, Zhang Y, Xu J, Oduol F, Gomez SM, Eiglmeier K, Ueberheide BM, Shabanowitz J, Hunt DF, Ribeiro JM, Vernick KD. (2006). Anopheles gambiae genome reannotation through synthesis of ab initio and comparative gene prediction algorithms. Genome Biol. 7(3):R24 [PubMed]<br>Download AgGlimmerXcel file (755 MB)*AnoXcel-nov-2007<br>A database of ENSEMBL An. gambiae proteins, with various blast links, including Marinotti's Affymetrix and assembled EST's (from 1 above). Original database description in Ribeiro JM, Topalis P, Louis C. (2004) AnoXcel: an Anopheles gambiae protein database. Insect Mol Biol. 2004 Oct;13(5):449-57 [PubMed]Download AnoXcel-nov-2007 file (625 MB)*Affy-Xcel<br>Plasmodium/Anopheles Affymetrix chip dataDownload AffyXcel-Nov-2007 file (856 MB)*<br>*Special Notes:Excel FilesTo open an .xls file: Extract the file to a new directory. Open the file by first launching the Excel application (do not use Explorer) and select the file from the application menu. This will ensure that the hyperlinks within the excel document function properly.Apple MacOSThe .xls files found on this page contain hyperlinks to web sites (NCBI) and to sequence data files. Currently, users of Apple Macintosh based operating systems are unable to directly open sequence data files from Excel. Instead, users should browse for these files in the directory that contains the .xls file.Zip FilesTo extract or "unzip" large .zip files, it is recommended that compression software, such as 7-Zip, be used.Disclaimer:The National Institute of Allergy and Infectious Disease (NIAID) provides these links solely for the convenience of the scientific community, who may need to access documents offered in these formats on our web site. The NIAID does not endorse these companies' products nor the accuracy of any information presented on their web site. All brand and product names are trademarks, registered trademarks or service marks of their respective companies.Updated: 11/20/2007<br>