cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Shared Shrines and the Discourse of Clashing Civilisations
Creators: name: Bowman, Glenn
Publisher: name: Entangled Religions
Year: 2019

description: Since I began, in the early 1980s, to research Muslim-Christian cohabitation of religious sites, I have been convinced of the political importance of making practices of intercommunal ‘sharing’ ethnographically visible. Thirty-five years of that work, spread across the Eastern Mediterranean (Israel/Palestine, Yugoslavia and its successor states, and both sides of the Cyprus divide), have not only revealed contemporary and historical choreographies of cohabitation but also their disintegration and the forces which bring it about. While I was carrying out this research, an accelerating resurgence of ethnic, religious and nationalistic politics was taking place not only throughout the areas I was studying but also in the global arena. This ‘identitarian’ politics, its philosophical grounding, and its shaping of academic and popular thought and practice is the focus of the first half of this paper; in the second part I look theoretically and empirically into examples of sharing and its refusal so as to show not only how cohabitation with alterity works but also to make visible the processes which sabotage it.
description: Entangled Religions, Vol 9 (2019): The Changing Landscapes of Cross-Faith Places and Practices
On rational homotopy and minimal models
Creators: name: Bock, Christoph
Publisher: name: arXiv
Year: 2019
Subjects: subject: Algebraic Topology (math.AT)
subject: FOS: Mathematics
subject: 55P62 (Primary), 16E45 (Secondary)

description: We prove a result that enables us to calculate the rational homotopy of a wide class of spaces by the theory of minimal models.
description: 8 pages. arXiv admin note: text overlap with arXiv:0903.2926
Additional file 1 of Identification and prediction of developmental enhancers in sea urchin embryos
Creators: name: Arenas-Mena, César
name: Miljovska, Sofija
name: Rice, Edward J.
name: Gurges, Justin
name: Shashikant, Tanvi
name: Wang, Zihe
name: Ercan, Sevinç
name: Danko, Charles G.
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1.
Digressions on Polytropy: An Exploration of Religious Eclecticism in Eurasia
Creators: name: Albera, Dionigi
Publisher: name: Entangled Religions
Year: 2019

description: The anthropologist Michael Carrithers introduced the notion of polytropy in the field of the study of religion, proposing that this notion (deriving from the Greek poly, ‘many’, and tropos, ‘turning’) may account for the eclecticism and fluidity of South Asian religious life. The exploration effectuated in the article suggests that the notion of polytropy could offer a promising tool for capturing some important features of religiosity in other Asiatic contexts, too, as well as in the Mediterranean. Polytropic trends appear in different religious contexts, from the fuzzy Chinese situation, where religious affiliations are very limited in their scope and relevance, to the South Asian contexts, in which religious orientations coalesce around the multivocal concept of dharma, to the tightly structured Abrahamic religions in the Mediterranean with their strong confessionalism. Polytropy is associated with a practical mode of religiosity and is linked to a particular conception of believing in which the believer tends to multiply the transactions with different supra-mundane partners. This orientation is distinct from religious styles that are based on a discursive and scriptural approach and/or on the cultivation of oneself, which often display a tendency towards unity, coherence and continuity. This permits identifying an opposite pole with respect to polytropy, which I define as monotropy.
description: Entangled Religions, Vol 9 (2019): The Changing Landscapes of Cross-Faith Places and Practices
Where Do the Multi-Religious Origins of Islam Lie? A Topological Approach to a Wicked Problem
Creators: name: Sing, Manfred
Publisher: name: Entangled Religions
Year: 2019

description: The revelation of Islam in Arabic, its emergence in the Western Arabian Peninsula, and its acquaintance with Biblical literature seem to be clear indications for Islam’s birthplace and its religious foundations. While the majority of academic scholarship accepts the historicity of the revelation in Mecca and Medina, revisionist scholars have started questioning the location of early Islam with increasing fervour in recent years. Drawing on the isolation of Mecca and the lack of clear references to Mecca in ancient and non-Muslim literature before the mid-eighth century, these scholars have cast doubt on the claim that Mecca was already a trading outpost and a pilgrimage site prior to Islam, questioning the traditional Islamic and Orientalist view. Space, thus, plays a prominent role in the debate on the origins of Islam, although space is almost never conceptually discussed. In the following paper, I challenge the limited understanding of space in revisionist as well as mainstream scholarship. For the most part, this scholarship is not really interested in the multi-religious landscape sui generis, but understands early Islam either as a stable or an unstable entity that either reworked or digested the impact of Judaism and Christianity. In contrast, my contention is based on the view that Islam emerged neither “in” Mecca nor anywhere else, but that Muslims’ practical and symbolic actions produced such places as Mecca, Medina, and the Ḥijāz as the central places of Islam. My argument is threefold: Firstly, the production of the Meccan space and its central meaning for Islam were mutually dependant, gradual processes. Secondly, the creation of an exclusively Muslim space in the Ḥijāz conversely inscribed multi-religiosity into the general topology of early Islam. Thirdly, the early history of Islam hints at practices of un/doing differences, exemplified by instances of sharing, the creation of ambivalence, and processes of
purification. Moreover, my contribution questions the way in which research on the origins of Islam has become a meaningful object of knowledge about the “true” nature of Islam against the background of populist discourses on Islam.
description: Entangled Religions, Vol 9 (2019): The Changing Landscapes of Cross-Faith Places and Practices
Quasi-probability representations of quantum theory with applications to quantum information science
Creators: name: Ferrie, Christopher
Publisher: name: arXiv
Year: 2010
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: This article comprises a review of both the quasi-probability representations of infinite-dimensional quantum theory (including the Wigner function) and the more recently defined quasi-probability representations of finite-dimensional quantum theory. We focus on both the characteristics and applications of these representations with an emphasis toward quantum information theory. We discuss the recently proposed unification of the set of possible quasi-probability representations via frame theory and then discuss the practical relevance of negativity in such representations as a criteria for quantumness.
description: v3: typos fixed, references added
Drive-specific adaptation in disordered mechanical networks of bistable springs
Creators: name: Kedia, Hridesh
name: Pan, Deng
name: Slotine, Jean-Jacques
name: England, Jeremy L.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Adaptation and Self-Organizing Systems (nlin.AO)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Systems with many stable configurations abound in nature, both in living and inanimate matter. Their inherent nonlinearity and sensitivity to small perturbations make them challenging to study, particularly in the presence of external driving, which can alter the relative stability of different attractors. Under such circumstances, one may ask whether any clear relationship holds between the specific pattern of external driving and the particular attractor states selected by a driven multistable system. To gain insight into this question, we numerically study driven disordered mechanical networks of bistable springs which possess a vast number of stable configurations arising from the two stable rest lengths of each spring, thereby capturing the essential physical properties of a broad class of multistable systems. We find that the attractor states of driven disordered multistable mechanical networks are fine-tuned with respect to the pattern of external forcing to have low work absorption from it. Furthermore, we find that these drive-specific attractor states are even more stable than expected for a given level of work absorption. Our results suggest that the driven exploration of the vast configuration space of these systems is biased towards states with exceptional relationship to the driving environment, and could therefore be used to `discover' states with desired response properties in systems with a vast landscape of diverse configurations.
description: 15 pages, 12 figures
Towards a Multi-Religious Topology of Islam: The Global Circulation of a Mutable Mobile
Creators: name: Sing, Manfred
Publisher: name: Entangled Religions
Year: 2019

description: Narratives of the origins, the history, and the present state of Islam always entail spatial claims. Accordingly, Islam emerged in the Arabian Peninsula, spread over its so-called heartlands, and became a world religion. A common understanding inscribes Islam onto the Orient and opposes it to Europe, the Occident, or the West. Such spatial claims are faced with fundamental challenges and epistemological shortcomings because neither Islam nor space are naturally given, bounded entities. Rather, different historical actors and observers produce spatialized Islam. In this chapter, I challenge the notion that “Muslim space” is a useful analytical concept, and scrutinize the ways in which academic discourses inscribe Islam onto space and history. As an alternative, I propose a topology that understands the production of space as a multi-dimensional social process, including Muslim and non-Muslim perspectives at the same time. Thus, I delineate the topology of Islam as variegated, dynamic, and multi-religious from its inception. My argument is that Islam’s trans-regional spread turned it into a polycentric, mutable mobile characterized by internal and external diversity. I further argue that images of Islam are an integral, yet often concealed part of European and Western knowledge production and self-understanding. Epistemologically, this perspective argues that the “Islamization of Islam” is nowhere better visible than in the spatial ramifications of discourses that marginalize, exclude, or obfuscate both the multi-religious experiences in Islamic contexts and the continuous presence of Islam in European history.
description: Entangled Religions, Vol 9 (2019): The Changing Landscapes of Cross-Faith Places and Practices
Instyle Gates
Creators: name: Murphy, Kim
Publisher: name: Zenodo
Year: 2021

description: InStyle Gates are your local professional gate fabricators and installers, offering quality security for residential and commercial properties. We have a range of gates and home security solutions available with innovative and modern designs. Browse our range online, or talk to our team for a competitive quote on a system designed for you. When you choose InStyle Gates, you're getting a gate backed by more than 20 years of experience in gate design and manufacturing. Call us today to learn more.
Free flags over local rings and powering of high dimensional expanders
Creators: name: Kaufman, Tali
name: Parzanchevski, Ori
Publisher: name: arXiv
Year: 2019
Subjects: subject: Combinatorics (math.CO)
subject: Group Theory (math.GR)
subject: FOS: Mathematics

description: Powering the adjacency matrix of an expander graph results in a better expander of higher degree. In this paper we seek an analogue operation for high-dimensional expanders. We show that the naive approach to powering does not preserve high-dimensional expansion, and define a new power operation, using geodesic walks on quotients of Bruhat-Tits buildings. Applying this operation results in high-dimensional expanders of higher degrees. The crux of the proof is a combinatorial study of flags of free modules over finite local rings. Their geometry describes links in the power complex, and showing that they are excellent expanders implies high dimensional expansion for the power-complex by Garland's local-to-global technique. As an application, we use our power operation to obtain new efficient double samplers.
A Muslim Holy Man to Convert Christians in a Transottoman Setting: Approaches to Sarı Saltuk from the Late Middle Ages to the Present
Creators: name: Rohdewald, Stefan
Publisher: name: Entangled Religions
Year: 2019

description: Interpretations of texts on Sarı Saltuk may serve as a central example of the entanglement of Muslim and Christian contexts in (south-)eastern Europe and the Near East. Analyzing the fifteenth-century Saltuk-nâme and reports by Evliya Çelebi from the seventeenth century, a wide extension of the area concerned, as far as Poland-Lithuania, Muscovy and Sweden, can be observed. With the change of the contents of reports from the nineteenth and twentieth centuries, an increasing interest in Christians participating in the veneration of sites connected to Sarı Saltuk can be remarked. Yet descriptions of a veneration of Sarı S altuk in a non-Muslim setting r emain firmly embedded in Christian contexts, complicating a transreligious interpretation of them. In today’s Turkish perspective, though, Sarı Saltuk is no longer contextualized in a manner encompassing Russia and Poland, too, but much more in a context focusing on and affirming national Turkish Anatolian or nationalized post-Ottoman contents in the Balkans.
description: Entangled Religions, Vol 9 (2019): The Changing Landscapes of Cross-Faith Places and Practices
MPEC 2024-C75 : 2024 CF1
Creators: name: Minor Planet Center Staff
Publisher: name: The Minor Planet Center
Year: 2024
Subjects: subject: Small Solar System bodies
valueUri: http://astrothesaurus.org/uat/1469
subject: 2024 CF1

description: The Minor Planet Electronic Circulars contain information on unusual minor planets, routine data on comets and natural satellites, and occasional editorial announcements.  They are published on behalf of Division F of the International Astronomical Union by the Minor Planet Center, Smithsonian Astrophysical Observatory, Cambridge, MA 02138, U.S.A.
MPEC 2023-J114 : 2023 JD1
Creators: name: Minor Planet Center Staff
Publisher: name: The Minor Planet Center
Year: 2023
Subjects: subject: Small Solar System bodies
valueUri: http://astrothesaurus.org/uat/1469
subject: 2023 JD1

description: The Minor Planet Electronic Circulars contain information on unusual minor planets, routine data on comets and natural satellites, and occasional editorial announcements.  They are published on behalf of Division F of the International Astronomical Union by the Minor Planet Center, Smithsonian Astrophysical Observatory, Cambridge, MA 02138, U.S.A.
Model pseudoconvex domains and bumping
Creators: name: Bharali, Gautam
Publisher: name: arXiv
Year: 2010
Subjects: subject: Complex Variables (math.CV)
subject: FOS: Mathematics
subject: 32

description: The Levi geometry at weakly pseudoconvex boundary points of domains in C^n, n \geq 3, is sufficiently complicated that there are no universal model domains with which to compare a general domain. Good models may be constructed by bumping outward a pseudoconvex, finite-type Ω\subset C^3 in such a way that: i) pseudoconvexity is preserved, ii) the (locally) larger domain has a simpler defining function, and iii) the lowest possible orders of contact of the bumped domain with \bdyΩ, at the site of the bumping, are realised. When Ω\subset C^n, n\geq 3, it is, in general, hard to meet the last two requirements. Such well-controlled bumping is possible when Ωis h-extendible/semiregular. We examine a family of domains in C^3 that is strictly larger than the family of h-extendible/semiregular domains and construct explicit models for these domains by bumping.
description: 28 pages; typos corrected; Remarks 2.6 & 2.7 added; clearer proof of Prop. 4.2 given; to appear in IMRN
Additional file 3 of Identification and prediction of developmental enhancers in sea urchin embryos
Creators: name: Arenas-Mena, César
name: Miljovska, Sofija
name: Rice, Edward J.
name: Gurges, Justin
name: Shashikant, Tanvi
name: Wang, Zihe
name: Ercan, Sevinç
name: Danko, Charles G.
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3: Fig. S1. Promoter and CRM PRO-, ATAC- and ChIP-seq analysis.
Analysis on Metric Spaces
Creators: name: Bonk, Mario
name: Capogna, Luca
name: Hajłasz, Piotr
name: Shanmugalingam, Nageswari
name: Tyson, Jeremy T.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Complex Variables (math.CV)
subject: Analysis of PDEs (math.AP)
subject: Functional Analysis (math.FA)
subject: Metric Geometry (math.MG)
subject: FOS: Mathematics
subject: 30L

description: This note is a survey of Analysis on Metric spaces, in connection with the upcoming AMS Mathematics Research Communities program in June 2020.
Flow analysis with cumulants: direct calculations
Creators: name: Bilandzic, Ante
name: Snellings, Raimond
name: Voloshin, Sergei
Publisher: name: arXiv
Year: 2010
Subjects: subject: Nuclear Experiment (nucl-ex)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Anisotropic flow measurements in heavy-ion collisions provide important information on the properties of hot and dense matter. These measurements are based on analysis of azimuthal correlations and might be biased by contributions from correlations that are not related to the initial geometry, so called non-flow. To improve anisotropic flow measurements advanced methods based on multi-particle correlations (cumulants) have been developed to suppress non-flow contribution. These multi-particle correlations can be calculated by looping over all possible multiplets, however this quickly becomes prohibitively CPU intensive. Therefore, the most used technique for cumulant calculations is based on generating functions. This method involves approximations, and has its own biases, which complicates the interpretation of the results. In this paper we present a new exact method for direct calculations of multi-particle cumulants using moments of the flow vectors.
description: 12 pages, 8 figures. Remark: In the second version most importantly corrected LaTeX typos in Eqs. (A10) and (C16), already corrected for the published PRC version
How to decompose arbitrary continuous-variable quantum operations
Creators: name: Sefi, Seckin
name: van Loock, Peter
Publisher: name: arXiv
Year: 2010
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We present a general, systematic, and efficient method for decomposing any given exponential operator of bosonic mode operators, describing an arbitrary multi-mode Hamiltonian evolution, into a set of universal unitary gates. Although our approach is mainly oriented towards continuous-variable quantum computation, it may be used more generally whenever quantum states are to be transformed deterministically, e.g. in quantum control, discrete-variable quantum computation, or Hamiltonian simulation. We illustrate our scheme by presenting decompositions for various nonlinear Hamiltonians including quartic Kerr interactions. Finally, we conclude with two potential experiments utilizing offline-prepared optical cubic states and homodyne detections, in which quantum information is processed optically or in an atomic memory using quadratic light-atom interactions.
description: Ver. 3: published version with supplementary material
Introduction: (How) Do We Share the Sacred?
Creators: name: Sing, Manfred
Publisher: name: Entangled Religions
Year: 2019

description: Multi-religious cohabitation bears immense social and political implications, since the question of how multi-religiosity should be organized has become a hotly debated topic all over Europe. Although religious diversity has turned into an everyday experience in many parts of the world today, a perception that understands conflict between religions as inevitable still holds sway and has maybe even grown stronger, especially after violent events such as the terror attacks of 9/11 and the recent upsurge of political populism in Europe and the Americas. A historically informed perspective that illustrates the widespread dissemination of religious mixture and the commonness of religious interaction throughout the centuries, however, may help us to see current debates in a different light. The present focus edition is dedicated to this purpose.
description: Entangled Religions, Vol 9 (2019): The Changing Landscapes of Cross-Faith Places and Practices
Additional file 4 of Identification and prediction of developmental enhancers in sea urchin embryos
Creators: name: Arenas-Mena, César
name: Miljovska, Sofija
name: Rice, Edward J.
name: Gurges, Justin
name: Shashikant, Tanvi
name: Wang, Zihe
name: Ercan, Sevinç
name: Danko, Charles G.
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 4: Fig. S2. PRO-, Pol II ChIP- and ATAC-seq at onecut, gcm, gatae and delta. A, onecut, the entire region was scanned for enhancer activity by overlapping reporter constructs averaging 2.23 Kb [40]. Similar snapshots are taken for other regulatory genes whose regulatory elements were primarily selected based on evolutionary sequence conservation rather than an unbiased tiling scan.
Sacred Spaces in a Holy City. Crossing Religious Boundaries in Istanbul at the Turn of the Twenty-First Century
Creators: name: Anastassiadou-Dumont, Méropi
Publisher: name: Entangled Religions
Year: 2019

description: The article examines Muslim pilgrimages to Christian places of worship in Istanbul after the 1950s. It aims to answer whether and how the Ottoman heritage of cultural diversity fits or does not fit with the pattern of the nation-state. After a brief bibliographic overview of the issue of shared sacred spaces, the presentation assembles, as a first step, some of the key elements of Istanbul’s multi-secular links with religious practices: the sanctity of the city both for Christianity and Islam; the long tradition of pilgrimages and their importance for the local economy; meanings and etymologies of the word pilgrimage in the most common languages of the Ottoman space; and the silence of the nineteenth century’s Greek sources concerning the sharing of worship. The second part focuses more specifically on some Orthodox
Greek sacred spaces in Istanbul increasingly frequented by Muslims during the last decades.
description: Entangled Religions, Vol 9 (2019): The Changing Landscapes of Cross-Faith Places and Practices
A relaxed version of Šoltés's problem and cactus graphs
Creators: name: Bok, Jan
name: Jedličková, Nikola
name: Maxová, Jana
Publisher: name: arXiv
Year: 2019
Subjects: subject: Combinatorics (math.CO)
subject: Discrete Mathematics (cs.DM)
subject: FOS: Mathematics
subject: FOS: Computer and information sciences
subject: 05D99, 94C15

description: The \emph{Wiener index} is one of the most widely studied parameters in chemical graph theory. It is defined as the sum of the lengths of the shortest paths between all unordered pairs of vertices in a given graph. In 1991, Šoltés posed the following problem regarding the Wiener index: Find all graphs such that its Wiener index is preserved upon removal of any vertex. The problem is far from being solved and to this day, only one graph with such property is known: the cycle graph on 11 vertices.
 In this paper, we solve a relaxed version of the problem, proposed by Knor et al.\ in 2018. For a given $k$, the problem is to find (infinitely many) graphs having exactly $k$ vertices such that the Wiener index remains the same after removing any of them. We call these vertices \emph{good} vertices and we show that there are infinitely many cactus graphs with exactly $k$ cycles of length at least 7 that contain exactly $2k$ good vertices and infinitely many cactus graphs with exactly $k$ cycles of length $c \in \{5,6\}$ that contain exactly $k$ good vertices. On the other hand, we prove that $G$ has no good vertex if the length of the longest cycle in $G$ is at most $4$.
description: small corrections regarding style and clarity
A class of groups for which every action is W*-superrigid
Creators: name: Houdayer, Cyril
name: Popa, Sorin
name: Vaes, Stefaan
Publisher: name: arXiv
Year: 2010
Subjects: subject: Operator Algebras (math.OA)
subject: Dynamical Systems (math.DS)
subject: Group Theory (math.GR)
subject: FOS: Mathematics

description: We prove the uniqueness of the group measure space Cartan subalgebra in crossed products A \rtimes Γcovering certain cases where Γis an amalgamated free product over a non-amenable subgroup. In combination with Kida's work we deduce that if Σ< SL(3,\Z) denotes the subgroup of matrices g with g_31 = g_32 = 0, then any free ergodic probability measure preserving action of Γ= SL(3,\Z) *_ΣSL(3,\Z) is stably W*-superrigid. In the second part we settle a technical issue about the unitary conjugacy of group measure space Cartan subalgebras.
description: v3: Minor changes; final version; to appear in Groups, Geometry, and Dynamics v2: We changed the title to make it more informative
The cost of school food programs in British Columbia
Creators: name: Kim, Dan
Publisher: name: University of British Columbia
Year: 2023

description: BACKGROUND: Canada is currently the only OECD country without a national school food program. The Government of Canada recently committed to working with different levels of government, Indigenous partners, and stakeholders towards a national school food policy. However, limited data on the costs of running a program in Canada is an evidence gap for making informed policy decisions. OBJECTIVES: This project aimed to synthesize published literature on the full costs of producing school lunches, estimate these costs in the BC provincial context, and gain stakeholder insights on the context and costs of existing programs in BC. METHODS: A literature review through Ovid MEDLINE, Web of Science, CAB Direct, ERIC (EBSCO), and additional grey literature gathered evidence on the costs of producing school lunches. Through a subsequent costing exercise, these costs were estimated in BC and a novel interactive costing tool was developed. Interviews (n=9) then highlighted perspectives of school district staff, government representatives, those directly involved in school food programs, and those with expertise on programs costs. These perspectives offered insights and contextualized the existing school food programs in BC, as well as the estimates and the interactive costing tool from the costing exercise. RESULTS: The literature (n=6 studies) reported costs associated with school lunches in the US, Norway, and Wales. The ensuing costing exercise produced a range of $2.79 to $5.18 for the estimated cost of preparing lunches in BC schools, while an array of input variables – including school characteristics (e.g., number of students), staffing information, additional costs, and revenue – were used to build the interactive costing tool. Stakeholders responded positively to the tool and highlighted its value for program planning, while providing insights into the major cost categories (e.g., food, human resources, infrastructure) and the policy considerations relevant to the BC context. DISCUSSION: This novel interactive costing tool is the key contribution of this research project. It simultaneously addresses the knowledge gap (of the missing evidence on school food program costs) while allowing the user to define the costing parameters using real numbers when estimating the costs of preparing school lunches in BC.
Computation of Casimir Interactions between Arbitrary 3D Objects with Arbitrary Material Properties
Creators: name: Reid, M. T. Homer
name: White, Jacob
name: Johnson, Steven G.
Publisher: name: arXiv
Year: 2010
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We extend a recently introduced method for computing Casimir forces between arbitrarily--shaped metallic objects [M. T. H. Reid et al., Phys. Rev. Lett._103_ 040401 (2009)] to allow treatment of objects with arbitrary material properties, including imperfect conductors, dielectrics, and magnetic materials. Our original method considered electric currents on the surfaces of the interacting objects; the extended method considers both electric and magnetic surface current distributions, and obtains the Casimir energy of a configuration of objects in terms of the interactions of these effective surface currents. Using this new technique, we present the first predictions of Casimir interactions in several experimentally relevant geometries that would be difficult to treat with any existing method. In particular, we investigate Casimir interactions between dielectric nanodisks embedded in a dielectric fluid; we identify the threshold surface--surface separation at which finite--size effects become relevant, and we map the rotational energy landscape of bound nanoparticle diclusters.
Additional file 6 of Identification and prediction of developmental enhancers in sea urchin embryos
Creators: name: Arenas-Mena, César
name: Miljovska, Sofija
name: Rice, Edward J.
name: Gurges, Justin
name: Shashikant, Tanvi
name: Wang, Zihe
name: Ercan, Sevinç
name: Danko, Charles G.
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 6: Fig. S4. Evaluation of models for CRMs overlapping and not overlapping promoters. A, 12 h embryo and, B, 20 h embryo models trained and tested with CRMs not overlapping promoters. C, 12 h embryo and, D, 20 h embryo models trained and tested with CRMs overlapping promoters.
INITIAL DATA MANAGEMENT PLAN (DMP) — PERSONALITY IN COMMUNITY ECOLOGY RESPONSES: INTEGRATING THE BEHAVIOUR AND SPECIES INTERACTIONS OF A MARINE INVADER
Creators: name: Moran, Nicholas Patrick
Publisher: name: Zenodo
Year: 2020

description: INITIAL DATA MANAGEMENT PLAN (DMP) — PERSONALITY IN COMMUNITY ECOLOGY RESPONSES: INTEGRATING THE BEHAVIOUR AND SPECIES INTERACTIONS OF A MARINE INVADER
Constructing Cycles in Isogeny Graphs of Supersingular Elliptic Curves
Creators: name: Xiao, Guanju
name: Luo, Lixia
name: Deng, Yingpu
Publisher: name: arXiv
Year: 2019
Subjects: subject: Number Theory (math.NT)
subject: FOS: Mathematics

description: Loops and cycles play an important role in computing endomorphism rings of supersingular elliptic curves and related cryptosystems. For a supersingular elliptic curve $E$ defined over $\mathbb{F}_{p^2}$, if an imaginary quadratic order $O$ can be embedded in $\text{End}(E)$ and a prime $L$ splits into two principal ideals in $O$, we construct loops or cycles in the supersingular $L$-isogeny graph at the vertices which are next to $j(E)$ in the supersingular $\ell$-isogeny graph where $\ell$ is a prime different from $L$. Next, we discuss the lengths of these cycles especially for $j(E)=1728$ and $0$. Finally, we also determine an upper bound on primes $p$ for which there are unexpected $2$-cycles if $\ell$ doesn't split in $O$.
description: 10pages
Moderate deviations for integral functionals of diffusion processes
Creators: name: Liptser, Robert
name: Spokoiny, Vladimir
Publisher: name: Weierstrass Institute
Year: 1997
Subjects: subject: Large Deviations
subject: Moderate Deviations
subject: Diffusions
subject: 60F10

description: The moderate deviation principle (MDP) is established for a family of integral functionals $varepsilon^-kappaint_0^t g(xi_s^varepsilon)ds$, where $varepsilon$ is a small positive parameter, $xi_t^varepsilon$ is ``fast'' ergodic diffusions, and $g$ is a smooth unbounded function. It is shown that if $kappain (0,1/2)$ then the MDP for such a family is nothing but a large deviation principle for a family $varepsilon^1/2-kappasqrtgamma W_t$ with a proper parameter $gamma$ and a standard Wiener process $W_t$. An application of this result is a deviation principle of Freidlin-Wentzell's type for a family of random processes generated by the ordinary differential equation $ dotY^varepsilon,kappa_t=a(Y_t^varepsilon,kappa)+ varrho(Y_t^varepsilon,kappa)n^varepsilon(t) $ governed by, so called, wide-band noise $n^varepsilon(t)=varepsilon^-kappa g(xi_t^varepsilon)$. Another application is a large deviation type estimation for functionals $varepsilon^-kappaint_0^T^varepsilon Psi^varepsilon (X_s^varepsilon) g(xi_s^varepsilon)ds$, where $0< kappa<1/2$, $Psi^varepsilon $ is an unbounded in $varepsilon$ smooth mapping of ``slow'' diffusions $X_t^varepsilon$ governed by the ``fast'' ones, and $[0,T^varepsilon]$ is an unbounded in $varepsilonto 0$ time interval.
MOESM4 of SELEX tool: a novel and convenient gel-based diffusion method for monitoring of aptamer-target binding
Creators: name: Liu, Qingxiu
name: Zhang, Wei
name: Chen, Siying
name: Zhuang, Zhenjing
name: Zhang, Yi
name: Jiang, Lingli
name: LIN, Jun
Publisher: name: figshare
Year: 2020
Subjects: Biophysics
Biochemistry
Physical Sciences not elsewhere classified
Cell Biology
Molecular Biology
Chemical Sciences not elsewhere classified

description: Additional file 4: Figure S3. There is no significant difference in diffusion situation of oligodeoxynucleotides (ODN) in non-horizontal placed gel. The gel was placed in erect direction after 5 min incubation for diffusion. It has little impact in the diffusion pattern of the ODN. Diffusion time was 6 h at room temperature.
PFDs involving medicine-related suicides in England and Wales before the covid-19 pandemic, 2013-2019
Creators: name: Heneghan, Carl
name: Aronson, Jeffrey K
name: Richards, Georgia C.
name: Anthony, Grace
Publisher: name: Open Science Framework
Year: 2020
Subjects: subject: preventable deaths
subject: suicide
subject: coroner reports
subject: suicide prevention
subject: PFDs
subject: Prevent Future Deaths

description: This repository holds the study protocol, materials, data, code and results of an observational study that analysed Prevention of Future Deaths reports (PFDs) in England and Wales where suicide and medicines caused or contributed to the death.
Additional file 5 of Identification and prediction of developmental enhancers in sea urchin embryos
Creators: name: Arenas-Mena, César
name: Miljovska, Sofija
name: Rice, Edward J.
name: Gurges, Justin
name: Shashikant, Tanvi
name: Wang, Zihe
name: Ercan, Sevinç
name: Danko, Charles G.
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 5: Fig. S3. The enhancer activity of promoter-overlapping CRMs is independent of their orientation. A, the concurrent orientation of the promoter in the GFP reporter construct and the promoter of promoter-overlapping CRMs could in principle result in transcripts reaching to the coding region of the reporter that could confound CRM driven transcription (red dashed line) with enhancer activity (black dotted line). In both cases the reporter enhancer activity of CRMs containing endogenous promoters should be diminished due to enhancer sharing between both promoters. Correlation of Pol II accumulation at endogenous promoters (purple ovals) and reporter expression is expected for CRMs that contain necessary enhancers and endogenous promoters. B, the difference of expression between CRMs in concurrent and divergent reporter construct orientation is not significant (ns) in 12 and 24 h embryos, Wilcox test p-values of 0.67 and 0.14, respectively.
Windowed Decoding of Protograph-based LDPC Convolutional Codes over Erasure Channels
Creators: name: Iyengar, Aravind
name: Papaleo, Marco
name: Siegel, Paul
name: Wolf, Jack
name: Vanelli-Coralli, Alessandro
name: Corazza, Giovanni
Publisher: name: arXiv
Year: 2010
Subjects: subject: Information Theory (cs.IT)
subject: FOS: Computer and information sciences

description: We consider a windowed decoding scheme for LDPC convolutional codes that is based on the belief-propagation (BP) algorithm. We discuss the advantages of this decoding scheme and identify certain characteristics of LDPC convolutional code ensembles that exhibit good performance with the windowed decoder. We will consider the performance of these ensembles and codes over erasure channels with and without memory. We show that the structure of LDPC convolutional code ensembles is suitable to obtain performance close to the theoretical limits over the memoryless erasure channel, both for the BP decoder and windowed decoding. However, the same structure imposes limitations on the performance over erasure channels with memory.
description: 18 pages, 9 figures, accepted for publication in the IEEE Transactions on Information Theory
Megahertz single-particle imaging at the European XFEL
Creators: name: Sobolev, Egor
name: Zolotarev, Serguey
name: Giewekemeyer, Klaus
name: Bielecki, Johan
name: Okamoto, Kenta
name: Reddy, Hemanth K. N.
name: Andreasson, Jakob
name: Ayyer, Kartik
name: Barak, Imrich
name: Bari, Sadia
name: Barty, Anton
name: Bean, Richard
name: Bobkov, Sergey
name: Chapman, Henry N.
name: Chojnowski, Grzegorz
name: Daurer, Benedikt J.
name: Dörner, Katerina
name: Ekeberg, Tomas
name: Flückiger, Leonie
name: Galzitskaya, Oxana
name: Gelisio, Luca
name: Hauf, Steffen
name: Hogue, Brenda G.
name: Horke, Daniel A.
name: Hosseinizadeh, Ahmad
name: Ilyin, Vyacheslav
name: Jung, Chulho
name: Kim, Chan
name: Kim, Yoonhee
name: Kirian, Richard A.
name: Kirkwood, Henry
name: Kulyk, Olena
name: Letrun, Romain
name: Loh, Duane
name: Messerschmidt, Marc
name: Mühlig, Kerstin
name: Ourmazd, Abbas
name: Raab, Natascha
name: Rode, Andrei V.
name: Rose, Max
name: Round, Adam
name: Sato, Takushi
name: Schubert, Robin
name: Schwander, Peter
name: Sellberg, Jonas A.
name: Sikorski, Marcin
name: Silenzi, Alessandro
name: Song, Changyong
name: Spence, John C. H.
name: Stern, Stephan
name: Sztuk-Dambietz, Jolanta
name: Teslyuk, Anthon
name: Timneanu, Nicusor
name: Trebbin, Martin
name: Uetrecht, Charlotte
name: Weinhausen, Britta
name: Williams, Garth J.
name: Xavier, P Lourdu
name: Xu, Chen
name: Vartanyants, Ivan
name: Lamzin, Victor
name: Mancuso, Adrian
name: Maia, Filipe R. N. C.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: Biological Physics (physics.bio-ph)
subject: FOS: Physical sciences

description: The emergence of high repetition-rate X-ray free-electron lasers (XFELs) powered by superconducting accelerator technology enables the measurement of significantly more experimental data per day than was previously possible. The European XFEL will soon provide 27,000 pulses per second, more than two orders of magnitude more than any other XFEL. The increased pulse rate is a key enabling factor for single-particle X-ray diffractive imaging, which relies on averaging the weak diffraction signal from single biological particles. Taking full advantage of this new capability requires that all experimental steps, from sample preparation and delivery to the acquisition of diffraction patterns, are compatible with the increased pulse repetition rate. Here, we show that single-particle imaging can be performed using X-ray pulses at megahertz repetition rates. The obtained results pave the way towards exploiting high repetition-rate X-ray free-electron lasers for single-particle imaging at their full repetition rate.
Classifying quantum phases using Matrix Product States and PEPS
Creators: name: Schuch, Norbert
name: Perez-Garcia, David
name: Cirac, Ignacio
Publisher: name: arXiv
Year: 2010
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We give a classification of gapped quantum phases of one-dimensional systems in the framework of Matrix Product States (MPS) and their associated parent Hamiltonians, for systems with unique as well as degenerate ground states, and both in the absence and presence of symmetries. We find that without symmetries, all systems are in the same phase, up to accidental ground state degeneracies. If symmetries are imposed, phases without symmetry breaking (i.e., with unique ground states) are classified by the cohomology classes of the symmetry group, this is, the equivalence classes of its projective representations, a result first derived in [X. Chen, Z.-C. Gu, and X.-G. Wen, Phys. Rev. B 83, 035107 (2011); arXiv:1008.3745]. For phases with symmetry breaking (i.e., degenerate ground states), we find that the symmetry consists of two parts, one of which acts by permuting the ground states, while the other acts on individual ground states, and phases are labelled by both the permutation action of the former and the cohomology class of the latter. Using Projected Entangled Pair States (PEPS), we subsequently extend our framework to the classification of two-dimensional phases in the neighborhood of a number of important cases, in particular systems with unique ground states, degenerate ground states with a local order parameter, and topological order. We also show that in two dimensions, imposing symmetries does not constrain the phase diagram in the same way it does in one dimension. As a central tool, we introduce the isometric form, a normal form for MPS and PEPS which is a renormalization fixed point. Transforming a state to its isometric form does not change the phase, and thus, we can focus on to the classification of isometric forms.
description: v2: 21 pages, 6 figures. Significantly rewritten and extended. Now contains a classification of phases both without and with symmetries, for systems with both unique and degenerate ground states. v3: 24 pages. Improved according to referees' suggestions (most notably added examples and improved definition of phases under symmetries). Accepted at Phys. Rev. B
Dynamic reconfiguration of human brain networks during learning
Creators: name: Bassett, Danielle S.
name: Wymbs, Nicholas F.
name: Porter, Mason A.
name: Mucha, Peter J.
name: Carlson, Jean M.
name: Grafton, Scott T.
Publisher: name: arXiv
Year: 2010
Subjects: subject: Neurons and Cognition (q-bio.NC)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Mathematical Physics (math-ph)
subject: Adaptation and Self-Organizing Systems (nlin.AO)
subject: Biological Physics (physics.bio-ph)
subject: FOS: Biological sciences
subject: FOS: Physical sciences

description: Human learning is a complex phenomenon requiring flexibility to adapt existing brain function and precision in selecting new neurophysiological activities to drive desired behavior. These two attributes -- flexibility and selection -- must operate over multiple temporal scales as performance of a skill changes from being slow and challenging to being fast and automatic. Such selective adaptability is naturally provided by modular structure, which plays a critical role in evolution, development, and optimal network function. Using functional connectivity measurements of brain activity acquired from initial training through mastery of a simple motor skill, we explore the role of modularity in human learning by identifying dynamic changes of modular organization spanning multiple temporal scales. Our results indicate that flexibility, which we measure by the allegiance of nodes to modules, in one experimental session predicts the relative amount of learning in a future session. We also develop a general statistical framework for the identification of modular architectures in evolving systems, which is broadly applicable to disciplines where network adaptability is crucial to the understanding of system performance.
description: Main Text: 19 pages, 4 figures Supplementary Materials: 34 pages, 4 figures, 3 tables
Additional file 7 of Identification and prediction of developmental enhancers in sea urchin embryos
Creators: name: Arenas-Mena, César
name: Miljovska, Sofija
name: Rice, Edward J.
name: Gurges, Justin
name: Shashikant, Tanvi
name: Wang, Zihe
name: Ercan, Sevinç
name: Danko, Charles G.
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 7: Fig. S5. Quantitative prediction of enhancer activity from ATAC and PRO-seq data. Plot of the hold-out predicted and actual reporter expression of linear regression models using ATAC and PRO-seq signal in 12 h and 20 h stages. Violin/Box-plots of R2 values, with the average indicated underneath.
On the distortion of knots on embedded surfaces
Creators: name: Pardon, John
Publisher: name: arXiv
Year: 2010
Subjects: subject: Geometric Topology (math.GT)
subject: FOS: Mathematics

description: Our main result is a nontrivial lower bound for the distortion of some specific knots. In particular, we show that the distortion of the torus knot $T_{p,q}$ satisfies $δ(T_{p,q})>\frac 1{160}\min(p,q)$. This answers a 1983 question of Gromov.
title: Algorithms for real-frequency evaluation of diagrammatic expansions
Creators: name: Taheridehkordi, Amir
Publisher: name: Memorial University of Newfoundland
Year: 2021

description: We compute perturbative expansions of the self-energy and spin susceptibility functions in real-frequency space for the two-dimensional Hubbard model using a new solution method. Each term of the expansion, represented by a Feynman diagram, is translated into its mathematical representation, which includes two types of summations: momentum-space (spatial) and frequency-space (temporal). We introduce algorithmic Matsubara integration (AMI), a method which utilizes the residue theorem to perform the Matsubara frequency summations and store the result in a symbolic form. This method provides the exact result (up to machine precision) at minimal computational expense. We then combine AMI with the Monte Carlo methods to sample diagram topologies in the expansion and to perform momenta summations. To optimize the Monte Carlo integration procedure we group the diagrams according to the symmetry of their integrands determined by the graph invariant transformations (GITs). Since the result of AMI (up to momentum sums) is analytic in terms of the external Matsubara frequency, temperature (T), chemical potential (μ), and Hubbard on-site potential (U), the analytic continuation to the real-frequency axis can be performed symbolically at any point of T − μ − U phase space, even at T = 0 which has been inaccessible in standard methods due to non-ergodicity of the Monte Carlo sampling in this temperature regime. We compare our results to other numerical methods in the parameter regimes where the perturbative expansion is convergent, and finally, benchmark our results on the real-frequency axis.