cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Emergence of non-abelian magnetic monopoles in a quantum impurity problem
Creators: name: Yakaboylu, Enderalp
name: Deuchert, Andreas
name: Lemeshko, Mikhail
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Other Condensed Matter (cond-mat.other)
subject: Atomic Physics (physics.atom-ph)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Recently it was shown that molecules rotating in superfluid helium can be described in terms of the angulon quasiparticles (Phys. Rev. Lett. 118, 095301 (2017)). Here we demonstrate that in the experimentally realized regime the angulon can be seen as a point charge on a 2-sphere interacting with a gauge field of a non-abelian magnetic monopole. Unlike in several other settings, the gauge fields of the angulon problem emerge in the real coordinate space, as opposed to the momentum space or some effective parameter space. Furthermore, we find a topological transition associated with making the monopole abelian, which takes place in the vicinity of the previously reported angulon instabilities. These results pave the way for studying topological phenomena in experiments on molecules trapped in superfluid helium nanodroplets, as well as on other realizations of orbital impurity problems.
description: 6 pages, 2 figures
MAAMD: a workflow to standardize meta-analyses and comparison of affymetrix microarray data
Creators: name: Gan, Zhuohui
name: Wang, Jianwu
name: Salomonis, Nathan
name: Stowe, Jennifer C.
name: Haddad, Gabriel G.
name: McCulloch, Andrew D.
name: Altintas, Ilkay
name: Zambon, Alexander C.
Publisher: name: BMC
Year: 2014
Subjects: UMBC Big Data Analytics Lab

description: Mandatory deposit of raw microarray data files for public access, prior to study publication, provides significant opportunities to conduct new bioinformatics analyses within and across multiple datasets. Analysis of raw microarray data files (e.g. Affymetrix CEL files) can be time consuming, complex, and requires fundamental computational and bioinformatics skills. The development of analytical workflows to automate these tasks simplifies the processing of, improves the efficiency of, and serves to standardize multiple and sequential analyses. Once installed, workflows facilitate the tedious steps required to run rapid intra- and inter-dataset comparisons.
Mobile technology in the self-management of heart failure: a systematic review and a qualitative study
Creators: name: Giordan, Leticia Bezerra
Publisher: name: Macquarie University
Year: 2022
Subjects: Other education not elsewhere classified

description: Background: Self-management is essential to improve heart failure outcomes. Aims: Review evidence on mobile application (app) interventions for heart failure self-management and understand patients' and clinicians' perspectives on their use. Methods: A systematic review and a qualitative study were conducted. A systematic search was performed in Medline, Embase, CINAHL, and PsycINFO to identify primary studies published between 2008 and 2020. The review included experimental and qualitative studies evaluating apps for heart failure self-management, focusing on any health-related outcomes or patients' perspectives. The qualitative study comprised semi-structured interviews with heart failure patients and clinicians to understand their perspectives on using apps in heart failure self-management. Transcripts were thematically analysed. Results: The systematic review showed that the use of apps in heart failure self-management is still in an early stage of research. Nineteen articles were included, with most studies being quasi-experimental or qualitative, and only four published randomized controlled trials (RCTs). Improvement in self-care behaviour was the most consistent finding among experimental studies, although there was inconsistency in the self-care components tested. Findings from included qualitative studies revealed that the most preferred app features included: automated and personalized self-monitoring and feedback, education, liquid intake tracking, and integration with other health-related platforms to enable data sharing and communication with clinicians and family. The qualitative study was conducted through face-to-face interviews of 6 patients and 6 clinicians in a primary care clinic and expanded on these results by highlighting the relevance of app features supporting patient-reported outcomes and mental health, and by reinforcing that patient-clinician communication and automated and personalized feedback are essential to improve knowledge, motivation, and self-management skills. Conclusion: Apps seem promising in improving heart failure self-management. Highly valued features by patients and clinicians included automated and personalized self-monitoring and feedback, ability to track and manage other health conditions, and patient-clinician communication -- abstract.
Additional file 2: Figure S2. of GPER mediates the angiocrine actions induced by IGF1 through the HIF-1Îą/VEGF pathway in the breast tumor microenvironment
Creators: name: Francesco, Ernestina De
name: Sims, Andrew
name: Maggiolini, Marcello
name: Sotgia, Federica
name: Lisanti, Michael
name: Clarke, Robert
Publisher: name: figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Cancer

description: Estrogen receptor expression and densitometric analysis of western blotting. (PDF 1130 kb)
A Framework for Interactive Teaching of Virtual Borders to Mobile Robots
Creators: name: Sprute, Dennis
name: Rasch, Robin
name: Tönnies, Klaus
name: König, Matthias
Publisher: name: arXiv
Year: 2017
Subjects: subject: Robotics (cs.RO)
subject: FOS: Computer and information sciences

description: The increasing number of robots in home environments leads to an emerging coexistence between humans and robots. Robots undertake common tasks and support the residents in their everyday life. People appreciate the presence of robots in their environment as long as they keep the control over them. One important aspect is the control of a robot's workspace. Therefore, we introduce virtual borders to precisely and flexibly define the workspace of mobile robots. First, we propose a novel framework that allows a person to interactively restrict a mobile robot's workspace. To show the validity of this framework, a concrete implementation based on visual markers is implemented. Afterwards, the mobile robot is capable of performing its tasks while respecting the new virtual borders. The approach is accurate, flexible and less time consuming than explicit robot programming. Hence, even non-experts are able to teach virtual borders to their robots which is especially interesting in domains like vacuuming or service robots in home environments.
description: 7 pages, 6 figures
Reverse engineering protocols for controlling spin dynamics
Creators: name: Zhang, Qi
name: Chen, Xi
name: Guery-Odelin, D.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We put forward reverse engineering protocols to shape in time the components of the magnetic field to manipulate a single spin, two independent spins with different gyromagnetic factors, and two interacting spins in short amount of times. We also use these techniques to setup protocols robust against the exact knowledge of the gyromagnetic factors for the one spin problem, or to generate entangled states for two or more spins coupled by dipole-dipole interactions.
Additional file 1 of Evolution of cytokinesis-related protein localization during the emergence of multicellularity in volvocine green algae
Creators: name: Arakaki, Yoko
name: Fujiwara, Takayuki
name: Kawai-Toyooka, Hiroko
name: Kawafune, Kaoru
name: Featherston, Jonathan
name: Durand, Pierre
name: Shin-Ya Miyagishima
name: Nozaki, Hisayoshi
Publisher: name: figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Evolutionary Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Table S1. List of primers used for amplification and sequencing of TsDRP1. Table S2. List of DRP1 and DRP2 proteins used in this study. (PDF 84 kb)
title: ADCO, Cart. 186 (11 H 71), f. 0240r
Creators: name: de la Côte d'Or, Archives départementales
name: CBMA/CG21/F.PETOT/2012
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, t. II (XVe siècle), tome II, Archives départementales de la Côte-d'Or, C
art. 186 (11 H 71). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, t. II (XVe siècle), tome II, Archives départementales de la
 Côte-d'Or, Cart. 186 (11 H 71), f. 0240r, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-
project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Misconceptions About Tantra – Ācārya Dr. Sthaneshwar Timalsina
Creators: name: Timalsina, Staneshwar
Publisher: name: Zenodo
Year: 2023
Subjects: Tantric philosophy
anava upaya
yantra
amnaya
Shiva
Shaiva
vimarsha-foundation
consciousness
mahadeva
Vasugupta
Sarvamnaya
tripura
Durga
Kaula
Abhinavagupta
Shiva Sutra
Kula
saivadvaita
vedanta
Mahakali
Tantra
Chandi
Kali
advaita vedanta
Bhairava
shambhava
timalsina
Spanda
Kashmir Shaivism
krama
Saundaryalahari
Tripura Rahasya
Tripurasundari
Camunda
agama
Devi Mahatmya
sarvamnaya
Guhyakālī
shakti
tantraloka
Divine Mother
sarvamnaya-oral-tradition-archive
trika
sthaneshwar timalsina
Īśāna
Mālinīvijayottaratantra
shakta upāya
Kubjika
Sadāśiva

description: Visit Vimarsha Foundation's website for more teachings, including FREE online courses offered by Śaivācārya Prof. Sthaneshwar Timalsina:
https://www.vimarshafoundation.org/courses

Join our Community on Facebook to discuss these topics and stay connected:
https://www.facebook.com/groups/vimarshafoundation/

This is an excerpt from: LIVE with Acharya Dr. Sthaneshwar Timalsina on topic Tantric Philosophy – https://www.youtube.com/watch?v=i9PsSGCh2OA&t=541s

Original YouTube video: https://www.youtube.com/watch?v=mktL5PM7daE

This presentation is part of the Sarvāmnāya Oral Tradition Archive.
Vimarsha Foundation. (2025). The Sarvāmnāya Oral Tradition Archive [Data set]. Zenodo. https://doi.org/10.5281/zenodo.15188107
Neural Networks retrieving Boolean patterns in a sea of Gaussian ones
Creators: name: Agliari, Elena
name: Barra, Adriano
name: Longo, Chiara
name: Tantari, Daniele
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mathematical Physics (math-ph)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: Restricted Boltzmann Machines are key tools in Machine Learning and are described by the energy function of bipartite spin-glasses. From a statistical mechanical perspective, they share the same Gibbs measure of Hopfield networks for associative memory. In this equivalence, weights in the former play as patterns in the latter. As Boltzmann machines usually require real weights to be trained with gradient descent like methods, while Hopfield networks typically store binary patterns to be able to retrieve, the investigation of a mixed Hebbian network, equipped with both real (e.g., Gaussian) and discrete (e.g., Boolean) patterns naturally arises. We prove that, in the challenging regime of a high storage of real patterns, where retrieval is forbidden, an extra load of Boolean patterns can still be retrieved, as long as the ratio among the overall load and the network size does not exceed a critical threshold, that turns out to be the same of the standard Amit-Gutfreund-Sompolinsky theory. Assuming replica symmetry, we study the case of a low load of Boolean patterns combining the stochastic stability and Hamilton-Jacobi interpolating techniques. The result can be extended to the high load by a non rigorous but standard replica computation argument.
description: 16 pages, 1 figure
In Pursuit of True Understanding
Creators: name: Robertson, Matthew
Publisher: name: Zenodo
Year: 2024
Subjects: sarvamnaya
vimarsha-foundation
sarvamnaya-oral-tradition-archive

description: June 22, 2024

"In Pursuit of True Understanding: Healers and Healing in Ayurvedic Medicine" by Dr. Matthew Robertson, Instructor of Humanities and Fine Arts, Murray State University, Kentucky

Vimarsha Academia
Hindu Studies Lecture Series

For more information visit our website:
https://www.vimarshafoundation.org/talkseries-registration

Original YouTube video: https://www.youtube.com/watch?v=x1-kdGE7Hsk

This presentation is part of the Sarvāmnāya Oral Tradition Archive.
Vimarsha Foundation. (2025). The Sarvāmnāya Oral Tradition Archive [Data set]. Zenodo. https://doi.org/10.5281/zenodo.15188107
Equilibrium properties of the lattice fluid with the repulsion between the nearest neighbors on the two-level lattice with nonrectangular geometry
Creators: name: Groda, Ya. G.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: The equilibrium properties of the lattice fluid with the repulsion between the nearest neighbors on the two-level planar triangular lattice are investigated. The numerical results obtained from the analytical expressions are compared with the Monte Carlo simulation data. It is shown that the previously proposed diagrammatic approximation makes it possible to determine the equilibrium characteristics of the lattice fluid with the repulsion between the nearest neighbors on a two-level lattice with an accuracy comparable to the accuracy of modelling the system using the Monte Carlo method in the entire range of thermodynamic parameters. It was found that, in contrast to a similar one-level system, a lattice fluid with the repulsion between the nearest neighbors undergoes a first-order phase transition.
description: 15 pages, 8 figures
title: ADCO, Septième cartulaire de Saint-Étienne de Dijon (1661-1665), Cart. 29 (G 134), 996 folios, f. 0463
Creators: name: de la Côte d'Or, Archives départementales
name: Projet CBMA
name: CG21/F.PETOT/2012
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Septième cartulaire de Saint-Étienne de Dijon (1661-1665), Archives départementales de la Côte-d'Or, Cart. 29 (G 134), 996 folios, f. 0463, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Septième cartulaire de Saint-Étienne de Dijon (1661-1665), Archives départementales de la Côte-d'Or, Cart. 29 (G 134), 996 folios, f. 0463, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
Non-extensive thermodynamics of the radiation in heterogeneous thermal plasmas
Creators: name: Dragan, G. S.
name: Kutarov, V. V.
name: Bekshaev, A. Y.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Plasma Physics (physics.plasm-ph)
subject: Other Condensed Matter (cond-mat.other)
subject: FOS: Physical sciences

description: Thermodynamic characteristics of the radiation of condensed combustion products presented in the form of agglomerates of metal-oxide nanoparticles demonstrate deviations from the classical Planck's law. We propose to interpret these deviations in terms of the non-additive entropy of the photon system interacting with the heterogeneous combustion products, which makes it possible to use the non-extensive Tsallis thermodynamics for their description. It is assumed that the non-additive character of the radiation entropy in heterogeneous plasma can be explained by the influence of long-range interactions and non-equilibrium physicochemical processes. An expression is obtained for the energy-dependent distribution of the photon density, based on the phenomenological parameter of non-extensiveness $q$ which, in the first approximation, does not depend on the energy. In this case, the "non-extensive" Planck's law can be reduced to the "usual" Planck distribution by introducing the "effective temperature" that exceeds the real temperature. Numerical modelling has shown that the spectral density of photons, the position and magnitude of its maximum depend on the value of the parameter $q$, which can be used for its experimental determination and revelation of its physical nature and origin.
description: 10 pages, 2 figures
Dynamical patterns in active nematics on a sphere
Creators: name: Henkes, Silke
name: Marchetti, M. Cristina
name: Sknepnek, Rastko
Publisher: name: arXiv
Year: 2017
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: Using agent-based simulations of self-propelled particles subject to short-range repulsion and nematic alignment we explore the dynamical phases of a dense active material confined to the surface of a sphere. We map the dynamical phase diagram as a function of curvature, alignment strength and activity and reproduce phases seen in recent experiments on active microtubules moving on the surfaces of vesicles. At low driving, we recover the equilibrium nematic ground state with four +1/2 defects. As the driving is increased, geodesic forces drive the transition to a band of polar matter wrapping around an equator, with large bald spots corresponding to two +1 defects at the poles. Finally, bands fold onto themselves, followed by the system moving into a turbulent state marked by active proliferation of pairs of topological defects. We highlight the role of nematic persistence length and time for pattern formation in these confined systems with finite curvature.
description: 10 pages, 9 figures, includes SI
Additional file 1: Table S1. of Silencing of DND1 in potato and tomato impedes conidial germination, attachment and hyphal growth of Botrytis cinerea
Creators: name: Kaile Sun
name: Tuinen, Ageeth Van
name: Kan, Jan Van
name: Wolters, Anne-Marie
name: Jacobsen, Evert
name: Visser, Richard
name: Yuling Bai
Publisher: name: figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Plant Biology
subject: 60506 Virology

description: Possible Botrytis cinerea S genes identified in Arabidopsis (according to Van Schie and Takken [18]). (PDF 84 kb)
Additional file 2 of Tianhuang formula regulates adipocyte mitochondrial function by AMPK/MICU1 pathway in HFD/STZ-induced T2DM mice
Creators: name: Luo, Duosheng
name: Zhao, Yaru
name: Fang, Zhaoyan
name: Zhao, Yating
name: Han, Yi
name: Piao, Jingyu
name: Rong, Xianglu
name: Guo, Jiao
Publisher: name: figshare
Year: 2023
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Hematology
subject: Virology
subject: Computational Biology

description: Additional file 2: Table 2. Primary antibodies for Western blotting assay.
Electronic structure of short-period ZnSe/ZnTe superlattices based on DFT calculations
Creators: name: Caid, M.
name: Rached, Y.
name: Rached, D.
name: Cheref, O.
name: Rached, H.
name: Benalia, S.
name: Merabet, M.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: In the present study we discuss the effect of variation in the number of monolayers $n$ on the electronic and optical properties of superlattices (SLs) (ZnSe)$_n$/(ZnTe)$_n$. The total energies were calculated by the full-potential linear muffin-tin orbital (FP-LMTO) method, and the exchange-correlation energy was applied in the local density approximation (LDA). First, the calculations show a decrease in the derivative of bulk modulus and electronic bandgap with an increase in the number of monolayers $n$. Second, the radiation energies up to $15$ eV, the dielectric function $\varepsilon(ω$), the refractive index $n(ω)$, and the reflectivity $R(ω)$ are studied. These calculations may be beneficial to understand the properties of short-period superlattices (ZnSe)$_n$/(ZnTe)$_n$.
description: 10 pages, 7 figures, 5 tables
MOESM11 of Subtracting the sequence bias from partially digested MNase-seq data reveals a general contribution of TFIIS to nucleosome positioning
Creators: name: Gutiérrez, Gabriel
name: Millán-Zambrano, Gonzalo
name: Medina, Daniel
name: Jordán-Pla, Antonio
name: Pérez-Ortín, José
name: Peñate, Xenia
name: Chávez, Sebastián
Publisher: name: figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Evolutionary Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Computational Biology

description: Additional file 11. Occupancy-versus-fuzziness changes of the TATA-like gene bodies and + 1 nucleosomes. Heat maps of the difference between the mutant dst1∆ and the wt in fuzziness versus occupancy for the gene body nucleosomes of the TATA-like genes (A), and for the + 1 nucleosome (defined as that between the TSS and 200 bp downstream) of each gene (B).
A reentrant superspin glass state and magnetization steps in the oxyborate Co2AlBO5
Creators: name: Kumar, Jitender
name: Panja, Soumendra Nath
name: John, Deepak
name: Bhattacharyya, Arpan
name: Nigam, A. K.
name: Nair, Sunil
Publisher: name: arXiv
Year: 2016
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: An oxyborate Co2AlBO5 belonging to the ludwigite family is investigated using structural, thermodynamic, dielectric and magnetic measurements. Magnetic measurements indicate that this system is seen to exhibit long range magnetic ordering at T{_N} = 42 K, signatures of which are also seen in the specific heat, dielectric susceptibility, and the lattice parameters. The absence of a structural phase transition down to the lowest measured temperatures, distinguishes it from the more extensively investigated Fe-based ludwigites. At low temperatures, the system is seen to stabilize in a reentrant superspin glass phase at T{_G} = 10.6 K from within the magnetically ordered state. This ground state is also characterized by magnetic field induced metamagnetic transitions, which at the lowest measured temperatures exhibit a number of sharp magnetization steps, reminiscent of that observed in the mixed valent manganites.
Systematic review and meta-analysis of the effects of male castration and female sterilization on healthspan in laboratory rats (Rattus norvegicus) and mice (Mus musculus domesticus).
Creators: name: Nakagawa, Shinichi
name: Garratt, Michael
name: Lagisz, Malgorzata
Publisher: name: OSF Registries
Year: 2024
Subjects: subject: Medicine and Health Sciences
subject: Life Sciences
subject: aging
subject: animals

description: Study scope (using PICO framework)
Population: wild-type laboratory rats (Rattus norvegicus) and mice (Mus musculus domesticus). Animals must not be genetically modified or have been subject to specifically increased incidence of pathology.
Intervention: male castration or female sterilization (ovariectomy). Animals must have been castrated or ovariectomized for an extended period from before the middle of life (for 6 months or more, but intervention must be conducted before 12 months old).
Comparator: comparable animals that were subject to sham treatment or no treatment.
Outcomes: measurements representing healthspan. Measurements and tests must have been conducted at some point beyond middle-age (in animals that are at least 12 months old) AND at least 6 months after the intervention.
Additional file 1 of Tianhuang formula regulates adipocyte mitochondrial function by AMPK/MICU1 pathway in HFD/STZ-induced T2DM mice
Creators: name: Luo, Duosheng
name: Zhao, Yaru
name: Fang, Zhaoyan
name: Zhao, Yating
name: Han, Yi
name: Piao, Jingyu
name: Rong, Xianglu
name: Guo, Jiao
Publisher: name: figshare
Year: 2023
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Hematology
subject: Virology
subject: Computational Biology

description: Additional file 1: Table 1. Primers for Real-Time PCR detection.
title: ADCO, Cartulaire de Cîteaux pour la grange et seigneurie d'Ouges (XVe siècle), Cart. 173 (11 H 939), 226 folios, f. 0088
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2015
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Cartulaire de Cîteaux pour la grange et seigneurie d'Ouges (XVe siècle), Archives départementales de la Côte-d'Or, Cart. 173 (11 H 939), 226 folios, f. 0088, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de Cîteaux pour la grange et seigneurie d'Ouges (XVe siècle), Archives départementales de la Côte-d'Or, Cart. 173 (11 H 939), 226 folios, f. 0088, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Postcards from an urban otherwhere: glimpses of life in Johannesburg 2014
Creators: name: Gillot, Robyn Lynn
Publisher: name: Macquarie University
Year: 2022
Subjects: Other education not elsewhere classified

description: This thesis examines the social praxis of middle-class whites in Johannesburg, examining the physical and perceptual consequences of the fortification of middle class suburbs. The thesis explores how heightened fear of crime has encouraged most middle class whites to secure their homes against strangers using physical and electronic barriers of control and surveillance. This withdrawal from public spaces has reduced opportunities for racial interaction and increased white fear of strangers. It is in this context that certain gentrification projects provide opportunities for city inhabitants' engagement with urban spaces and racial others, potentially contributing to the evolution of a non-racial, democratised society.
Additional file 2: of Effectiveness of robot-assisted training added to conventional rehabilitation in patients with humeral fracture early after surgical treatment: protocol of a randomised, controlled, multicentre trial
Creators: name: Nerz, Corinna
name: Schwickert, Lars
name: Becker, Clemens
name: Studier-Fischer, Stefan
name: MĂźĂIg, Janina
name: Augat, Peter
Publisher: name: figshare
Year: 2017
Subjects: subject: Cell Biology
subject: Neuroscience
subject: Biotechnology
subject: Developmental Biology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: Schedule of enrolment, interventions, and assessments. (PDF 25 kb)
Perturbation, Non-Gaussianity and Reheating in a GB-$α$-Attractor Model
Creators: name: Nozari, Kourosh
name: Rashidi, Narges
Publisher: name: arXiv
Year: 2017
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Motivated by $α$-attractor models, in this paper we consider a Gauss-Bonnet inflation with E-model type of potential. We consider the Gauss-Bonnet coupling function to be the same as the E-model potential. In the small $α$ limit we obtain an attractor at $r=0$ as expected, and in the large $α$ limit we recover the Gauss-Bonnet model with potential and coupling function of the form $ϕ^{2n}$. We study perturbations and non-Gaussianity in this setup and we find some constraints on the model's parameters in comparison with PLANCK datasets. We study also the reheating epoch after inflation in this setup. For this purpose, we seek the number of e-folds and temperature during reheating epoch. These quantities depend on the model's parameter and the effective equation of state of the dominating energy density in the reheating era. We find some observational constraints on these parameters.
description: 12 pages, 4 figures, Revised version, to appear in PRD
Additional file 3 of Tianhuang formula regulates adipocyte mitochondrial function by AMPK/MICU1 pathway in HFD/STZ-induced T2DM mice
Creators: name: Luo, Duosheng
name: Zhao, Yaru
name: Fang, Zhaoyan
name: Zhao, Yating
name: Han, Yi
name: Piao, Jingyu
name: Rong, Xianglu
name: Guo, Jiao
Publisher: name: figshare
Year: 2023
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Hematology
subject: Virology
subject: Computational Biology

description: Additional file 3: Supplementary Figure 5. Effect of THF on mitochondrial energy metabolism-related protein levels in epididymal white adipose tissue of HFD/STZ-induced T2DM mice.
'Keep calm and carry on' or 'Cancel everything'? The role of mindsets in the context of the COVID-19 viral outbreak
Creators: name: Horii, Rina
name: Leibowitz, Kari
name: Louis, Kengthsagn
name: Zion, Sean
name: Heathcote, Lauren
name: Crum, Alia
Publisher: name: Open Science Framework
Year: 2022

description: This registration is for our T1 baseline survey conducted from March 11 through March 21, 2020. Our major scientific aim is to advance our understanding of the role of mindsets in influencing behaviors and health. Specifically, we hope to explore how mindsets about illness and the body influence behavior, health, and well-being in the context of the COVID-19 pandemic.
Emotion in Reinforcement Learning Agents and Robots: A Survey
Creators: name: Moerland, Thomas M.
name: Broekens, Joost
name: Jonker, Catholijn M.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Machine Learning (cs.LG)
subject: Artificial Intelligence (cs.AI)
subject: Human-Computer Interaction (cs.HC)
subject: Robotics (cs.RO)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: This article provides the first survey of computational models of emotion in reinforcement learning (RL) agents. The survey focuses on agent/robot emotions, and mostly ignores human user emotions. Emotions are recognized as functional in decision-making by influencing motivation and action selection. Therefore, computational emotion models are usually grounded in the agent's decision making architecture, of which RL is an important subclass. Studying emotions in RL-based agents is useful for three research fields. For machine learning (ML) researchers, emotion models may improve learning efficiency. For the interactive ML and human-robot interaction (HRI) community, emotions can communicate state and enhance user investment. Lastly, it allows affective modelling (AM) researchers to investigate their emotion theories in a successful AI agent class. This survey provides background on emotion theory and RL. It systematically addresses 1) from what underlying dimensions (e.g., homeostasis, appraisal) emotions can be derived and how these can be modelled in RL-agents, 2) what types of emotions have been derived from these dimensions, and 3) how these emotions may either influence the learning efficiency of the agent or be useful as social signals. We also systematically compare evaluation criteria, and draw connections to important RL sub-domains like (intrinsic) motivation and model-based RL. In short, this survey provides both a practical overview for engineers wanting to implement emotions in their RL agents, and identifies challenges and directions for future emotion-RL research.
description: To be published in Machine Learning Journal
Gene expression profiling of peripheral blood in sporadic and C9orf72-associated amyotrophic lateral sclerosis
Creators: name: Watson, Owen T.
Publisher: name: Macquarie University
Year: 2022
Subjects: Other education not elsewhere classified

description: Amyotrophic lateral sclerosis (ALS) is a fatal neuro-degenerative disease characterised by the progressive loss of motor neurons. Progressive paralysis leads to death within 2-5 years of symptom onset. Currently there is no effective treatment for ALS as there is a lack of understanding regarding the cellular mechanisms of disease pathogenesis and progression. Approximately 10% of ALS patients have a family history of ALS (fALS), 90% of cases occur sporadically (sALS) and have an unknown disease aetiology. Causal ALS gene mutations only account for a small proportion of cases. Two individual projects were completed as part of this study. The first project sought to elucidate the altered molecular pathways that occur in ALS using unbiased transcriptome-wide analysis of a blood-derived RNA-Seq dataset, comprising 95 sALS patients and 69 controls. There was differential expression of 1,151 between sALS cases and controls. Functional analysis identified up-regulation of antiviral pathways in early-onset sALS. Targeted analysis found that three ALS-associated genes were significantly differentially expressed in sALS. Statistical analysis of clinical traits amongst sALS cases, uncovered that early-onset cases had slower disease progression than late-onset cases (p<0.001). The finding that antiviral activation occurs in asubset of sALS cases indicates that gene expression profiling of peripheral blood samples from large sALS cohorts will be essential for understanding disease pathogenesis and directing the targeted development of therapeutics for ALS. The second project sought to determine if expression of mRNA transcripts is altered in carriers of the ALS gene, C9orf72, compared to non-carriers. A hexanucleotide repeat expansion in the C9orf72 gene is the most frequent ALS-associated gene mutation. Haploinsufficiency of C9orf72, due to presence of the repeat expansion, may be a mechanism of pathogenesis. A previous (unpublished) DNA methylation study, within our group, has identified that the upstream C9orf72 promoter is significantly more methylated in carriers of the C9orf72 pathogenic repeat compared to non-carriers. RT-qPCR was conducted to determine the relative abundance of C9orf72 mRNA transcripts between carriers of the C9orf72 expansion (n=11) and age/sex matched controls (n=11). C9orf72 transcript 1 (NM 145005) was significantly reduced in C9orf72 repeat carriers compared to controls.
MOESM1 of Benefits of a mentoring support program for individuals with an eating disorder: a proof of concept pilot program
Creators: name: Ramjan, Lucie
name: Hay, Phillipa
name: Fogarty, Sarah
Publisher: name: figshare
Year: 2017
Subjects: subject: Medicine
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1. MCQ post-program values and results for mentees and mentors. MCQ post-program results for mentors compared to population norms.
Additional file 4 of Tianhuang formula regulates adipocyte mitochondrial function by AMPK/MICU1 pathway in HFD/STZ-induced T2DM mice
Creators: name: Luo, Duosheng
name: Zhao, Yaru
name: Fang, Zhaoyan
name: Zhao, Yating
name: Han, Yi
name: Piao, Jingyu
name: Rong, Xianglu
name: Guo, Jiao
Publisher: name: figshare
Year: 2023
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Hematology
subject: Virology
subject: Computational Biology

description: Additional file 4: Supplementary Figure 6. Effect of THF on mitochondrial energy metabolism-related protein levels in 3T3-L1 adipocytes cells induced dexamethasone.
Data from: Inference of cross-species gene flow using genomic data depends on the methods: Case study of gene flow in Drosophila
Creators: name: Ji, Jiayi
name: Roberts, Tom
name: Flouri, Thomas
name: Yang, Ziheng
Publisher: name: Zenodo
Year: 2024
Subjects: Drosophila
BPP
multispecies coalescent
Introgression
migration

description: Analysis of genomic data in the past two decades has highlighted the prevalence of introgression as an important evolutionary force in both plants and animals. The genus Drosophila has received much attention recently, with an analysis of genomic sequence data detailing widespread introgression across the species phylogeny for the genus. However, the methods used in the study are based on data summaries for species triplets and are unable to infer gene flow between sister lineages or to identify the direction of gene flow. Hence, we reanalyze a subset of the data using the Bayesian program bpp, which is a full-likelihood implementation of the multispecies coalescent (MSC) model and can provide more powerful inference of gene flow between species, including its direction, timing, and strength. While our analysis supports the presence of gene flow in the species group, the results differ from the previous study: we infer gene flow between sister lineages undetected previously whereas most gene-flow events inferred in the previous study are rejected in our tests. To verify our conclusions, we performed simulations to examine the properties of Bayesian and summary methods. Bpp was found to have high power to detect gene flow, high accuracy in estimated rates of gene flow, and robustness under misspecification of the mode of gene flow. In contrast, summary methods had low power and produced biased estimates of introgression probability. Our results suggest that likelihood methods under the MSC models of gene flow provide important complements to summary methods for charactering the rich history of species divergence and introgression using genomic data.
description: Funding provided by: Biotechnology and Biological Sciences Research CouncilROR ID: https://ror.org/00cwqg982Award Number: BB/T003502/1
Funding provided by: Natural Environment Research CouncilROR ID: https://ror.org/02b5d8509Award Number: NE/X002071/1)
Funding provided by: Biotechnology and Biological Sciences Research CouncilROR ID: https://ror.org/00cwqg982Award Number: BB/X007553/1
Funding provided by: Biotechnology and Biological Sciences Research CouncilROR ID: https://ror.org/00cwqg982Award Number: BB/R01356X/1
description: Supplemental Information containing supplemental text, figures, and tables.
title: ADCO, Ordre cistercien : comptes (1499-1515) (11 H 1162), f. 00350
Creators: name: de la Côte-d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2019
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: comptes
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Ordre cistercien : comptes (1499-1515), Archives départementales de la Côte-d'Or, (11 H 1162). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Ordre cistercien : comptes (1499-1515), Archives départementales de la Côte-d'Or, (11 H 1162), f. 00350, in Projet CBMA - Corpus Burgundiae Medii Aevi \[Ressource en ligne\], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
MOESM10 of Subtracting the sequence bias from partially digested MNase-seq data reveals a general contribution of TFIIS to nucleosome positioning
Creators: name: Gutiérrez, Gabriel
name: Millán-Zambrano, Gonzalo
name: Medina, Daniel
name: Jordán-Pla, Antonio
name: Pérez-Ortín, José
name: Peñate, Xenia
name: Chávez, Sebastián
Publisher: name: figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 10. Effect of the absence of TFIIS on the expression of the different types of genes. A) Scatter plot of the nascent transcription rate of each gene in the wt (X-axis) and in dst1∆ (Y-axis). B) Diagram showing the relationship between the group of genes with a weaker GRO signal in dst1∆ compared to the wt (TFIIS-dependent) in the TATA-containing genes and TATA-like genes. The TATA-containing genes are overrepresented in the TFIIS-dependent genes (hypergeometric test, p = 0.006), while the TATA-like genes are under-represented (hypergeometric test, p = 0.028). C) The Bio-GRO signals of the RP genes in the wt and dst1∆. After classification, genes were aligned to their TSS.
Data from: Inference of cross-species gene flow using genomic data depends on the methods: Case study of gene flow in Drosophila
Creators: name: Ji, Jiayi
name: Roberts, Tom
name: Flouri, Thomas
name: Yang, Ziheng
Publisher: name: Zenodo
Year: 2024
Subjects: Drosophila
BPP
multispecies coalescent
Introgression
migration

description: Analysis of genomic data in the past two decades has highlighted the prevalence of introgression as an important evolutionary force in both plants and animals. The genus Drosophila has received much attention recently, with an analysis of genomic sequence data detailing widespread introgression across the species phylogeny for the genus. However, the methods used in the study are based on data summaries for species triplets and are unable to infer gene flow between sister lineages or to identify the direction of gene flow. Hence, we reanalyze a subset of the data using the Bayesian program bpp, which is a full-likelihood implementation of the multispecies coalescent (MSC) model and can provide more powerful inference of gene flow between species, including its direction, timing, and strength. While our analysis supports the presence of gene flow in the species group, the results differ from the previous study: we infer gene flow between sister lineages undetected previously whereas most gene-flow events inferred in the previous study are rejected in our tests. To verify our conclusions, we performed simulations to examine the properties of Bayesian and summary methods. Bpp was found to have high power to detect gene flow, high accuracy in estimated rates of gene flow, and robustness under misspecification of the mode of gene flow. In contrast, summary methods had low power and produced biased estimates of introgression probability. Our results highlight an urgent need for improving the statistical properties ofsummary methods and the computational efficiency of likelihood methods for inferring gene flow using genomic sequence data.
description: Funding provided by: Biotechnology and Biological Sciences Research CouncilROR ID: https://ror.org/00cwqg982Award Number: BB/T003502/1
Funding provided by: Natural Environment Research CouncilROR ID: https://ror.org/02b5d8509Award Number: NE/X002071/1)
Funding provided by: Biotechnology and Biological Sciences Research CouncilROR ID: https://ror.org/00cwqg982Award Number: BB/X007553/1
Funding provided by: Biotechnology and Biological Sciences Research CouncilROR ID: https://ror.org/00cwqg982Award Number: BB/R01356X/1
description: Supplemental Information containing supplemental text, figures, and tables.
Does seawall greening facilitate non-indigenous species?
Creators: name: Furchert, Tegan Margot
Publisher: name: Macquarie University
Year: 2022
Subjects: Other education not elsewhere classified

description: Artificial structures such as seawalls, typically support less biodiversity than the natural habitats they replace and can harbour non-indigenous species (NIS). Greening projects enhance biodiversity by adding complexity and surface area. It is, however, unclear to what extent they facilitate NIS. In one of the largest attempts to green seawalls through retrofitting, two 12m stretches were fitted with habitat enhancing concrete panels of six designs - five complex and one flat. Sampling of whole panels and the microhabitats within these were assessed as to - (1) whether colonisation of NIS was enhanced on the complex panels when compared to the flat panel, (2) whether there were particular designs and microhabitats that promoted NIS, and (3) whether colonisation patterns differed among tidal elevations. At high and mid intertidal elevations, the contribution of NIS to total abundance and richness was generally very small on both complex and flat panels. At the low intertidal elevation by contrast, NIS contributed approximately 75% sessile cover, 50% richness and were in some instances 50% more abundant and diverse in growth on the complex rather than flat panels. Within the panels, NIS were particularly abundant in moist, shaded microhabitats. Knowledge of these factors that promoted NIS colonisation will assist in designing future greening interventions that do not facilitate NIS.