cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Out-of-equilibrium Chiral Magnetic Effect from simulations on Euclidean lattices
Creators: name: Buividovich, P. V.
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The status of the Chiral Magnetic Effect (CME) response in full Quantum Chromodynamics (QCD) has been controversial so far, with previous lattice QCD studies indicating either its strong suppression or vanishing in thermal equilibrium state. We introduce the Euclidean-time correlator of axial charge and electric current as an observable that can be used to study the finite out-of-equilibrium CME response in first-principle lattice QCD simulations with background magnetic field. This observable directly reflects the fact that in the background magnetic field, a state with nonzero axial charge features nonzero electric current. For free fermions, the axial-vector correlator only receives contributions from the Lowest Landau Level, and exhibits a linear dependence on both magnetic field and temperature with a universal coefficient. With an appropriate regularization, non-vanishing axial-vector correlator is compatible with the vanishing of the CME current in thermal equilibrium state with nonzero chiral chemical potential $μ_5$. We demonstrate that the real-time counterpart of the Euclidean-time axial-vector correlator is intimately related to the real-time form of the axial anomaly equation, which strongly limits possible corrections in full QCD. We present numerical results for the Euclidean-time axial-vector correlator in $SU(2)$ lattice gauge theory with $N_f = 2$ light quark flavours, demonstrating reasonable agreement with free fermion result on both sides of the chiral crossover. The proposed methodology should help to answer the question whether the QCD corrections might be responsible for non-observation of CME in heavy-ion collision experiments such as the RHIC isobar run.
description: 13 pages RevTeX, 7 figures, published version
The Labeling System: A Bottom-Up Approach For Enriched Vocabularies In The Humanities
Creators: name: Thiery, Florian
name: Engel, Thomas
Publisher: name: Zenodo
Year: 2015
Subjects: linked data
linked open data
thesaurus
SKOS

description: Shared thesauri of concepts are increasingly used in the process of data modelling and annotating resources in the Semantic Web. This growing family of linked data thesauri follows a top-down principle. Vocabularies and broader concepts (SKOS-) are being created, maintained and provided under the supervision of central authorities to provide general and generic approaches used by scientists in the humanities. But the diversity of research questions in the humanities makes it virtually impossible to create shared controlled vocabularies that cover a wide range of potential applications, and therefore satisfy the needs of diverse stakeholders. Reliable interconnections among independent systems could solve this conceptual bottleneck of controlled vocabularies. The Labeling System (LS), developed by i3mainz and IEG in contrast follows a bottom-up approach, enabling scientists working in the digital humanities to manage, create and publish their own controlled vocabularies as a SKOS concept scheme and concepts provided via a REST API and URIs. One term of the vocabulary can be linked to broader corresponding concepts of domain experts and will become labels. The labels embed those broader concepts persistently into existing structures using a clean and straightforward UI. Technically the LS is defined over a flat ontology and can be queried through its triple store. The created concepts can then be interlinked with well known LOD resources from e.g. The Getty Research Institute or the British Museum, but also to authorities maintaining linked data resources from natural science domains. The LS is domain independent, while uniting perspectives of different scientific disciplines on the same label and therefore contributing to interdisciplinary collaboration for building up cross and inter-domain linked data communities. As the newly created expert resources are available persistently, the concept is quotable, which strengthens the scientific discourse of their semantic shape. The paper addresses principles of the Labeling System in the light of heterogeneous archaeological data from Western Europe and the Middle East. Consequently, “usual” archaeological topics of conceptualizing and interlinking temporal and spatial concepts (meaning) will be discussed. To what extent is it possible to align existing concepts with “inserting” specific concepts of domain experts? How can the LS be used to solve the ambiguity of a place type and its role or function in a specific archaeological meaning? Furthermore, we will show how the non-technical researcher can use the Labeling System to get introduced into the process of linked-data conceptualization. Finally, the paper details the benefits of enriching linked-data concepts through relating to linked-data communities of other domains, e.g. geology or anatomy.
The Open Effective Field Theory of Inflation
Creators: name: Salcedo, Santiago Agui
name: Colas, Thomas
name: Pajer, Enrico
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: In our quest to understand the generation of cosmological perturbations, we face two serious obstacles: we do not have direct information about the environment experienced by primordial perturbations during inflation, and our observables are practically limited to correlators of massless fields, heavier fields and derivatives decaying exponentially in the number of e-foldings. The flexible and general framework of open systems has been developed precisely to face similar challenges. Building on previous work, we develop a Schwinger-Keldysh path integral description for an open effective field theory of inflation, describing the possibly dissipative and non-unitary evolution of the Goldstone boson of time translations interacting with an unspecified environment, under the key assumption of locality in space and time. Working in the decoupling limit, we study the linear and interacting theory in de Sitter and derive predictions for the power spectrum and bispectrum that depend on a finite number of effective couplings organised in a derivative expansion. The smoking gun of interactions with the environment is an enhanced but finite bispectrum close to the folded kinematical limit. We demonstrate the generality of our approach by matching our open effective theory to an explicit model. Our construction provides a standard model to simultaneously study phenomenological predictions as well as quantum information aspects of the inflationary dynamics.
description: 56 pages without appendices (82 pages in total), 12 figures, 2 tables; matches published version in JHEP
Complexity Measure Diagnostics of Ergodic to Many-Body Localization Transition
Creators: name: Cohen, Khen
name: Oz, Yaron
name: Zhong, De-liang
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We introduce new diagnostics of the transition between the ergodic and many-body localization phases, which are based on complexity measures defined via the probability distribution function of the Lanczos coefficients of the tri-diagonalized Hamiltonian. We use these complexity measures to analyze the power-law random banded matrix model as a function of the correlation strength and show that the moments and the entropy of the distribution diagnose the ergodic to many-body transition, as well as the distinctive feature of the phases concerning the memory of the initial conditions.
description: 7+10 pages, 7+ 17 figures. v2: appendix I added, typos corrected, published version
6._ONLINE_SUPPLEMENTS_2nd_revision - Bidirectional Association Between Self-Control and Internalizing Problems Among College Freshmen: A Cross-Lagged Study
Creators: name: Situ, Qiao-Min
name: Li, Jian-Bin
name: Dou, Kai
name: Wang, Yu-Jie
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: 6._ONLINE_SUPPLEMENTS_2nd_revision for Bidirectional Association Between Self-Control and Internalizing Problems Among College Freshmen: A Cross-Lagged Study by Qiao-Min Situ, Jian-Bin Li, Kai Dou and Yu-Jie Wang in Emerging Adulthood
Supplemental Material, LucasSzatrowski2014T1 - Often Trusted but Never (Properly) Tested: Evaluating Qualitative Comparative Analysis
Creators: name: Baumgartner, Michael
name: Thiem, Alrik
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 160807 Sociological Methodology and Research Methods
subject: FOS: Sociology
subject: Sociology

description: Supplemental Material, LucasSzatrowski2014T1 for Often Trusted but Never (Properly) Tested: Evaluating Qualitative Comparative Analysis by Michael Baumgartner and Alrik Thiem in Sociological Methods & Research
ELEPHANT: ExtragaLactic alErt Pipeline for Hostless AstroNomical Transients
Creators: name: Pessi, P. J.
name: Durgesh, R.
name: Nakazono, L.
name: Hayes, E. E.
name: Oliveira, R. A. P.
name: Ishida, E. E. O.
name: Moitinho, A.
name: Krone-Martins, A.
name: Moews, B.
name: de Souza, R. S.
name: Beck, R.
name: Kuhn, M. A.
name: Nowak, K.
name: Vaughan, S.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Context. Transient astronomical events that exhibit no discernible association with a host galaxy are commonly referred to as hostless. These rare phenomena are associated with extremely energetic events, and they can offer unique insights into the properties and evolution of stars and galaxies. However, the sheer number of transients captured by contemporary high-cadence astronomical surveys renders the manual identification of all potential hostless transients impractical. Therefore, creating a systematic identification tool is crucial for studying these elusive events. Aims. We present the ExtragaLactic alErt Pipeline for Hostless AstroNomical Transients (ELEPHANT), a framework for filtering hostless transients in astronomical data streams. Methods. We used Fink to access all the ZTF alerts produced between January/2022 and December/2023, selecting only those associated with extragalactic transients. We then processed the associated stamps using a sequence of image analysis techniques to retrieve hostless candidates. Results. We find that less than 2% of all analyzed transients are potentially hostless. Among them, approximately 10% have a spectroscopic class reported on TNS, with Type Ia supernova being the most common class, followed by SLSN. Among the hostless candidates retrieved by our pipeline, there was SN 2018ibb, which has been proposed to be a PISN candidate; and SN 2022ann, one of only five known SNe Icn. When no class is reported on TNS, the dominant classes are QSO and SN candidates, the former obtained from SIMBAD and the latter inferred using the Fink ML classifier. Conclusions. ELEPHANT represents an effective strategy to filter extragalactic events within large and complex astronomical alert streams. There are many applications for which this pipeline will be useful, ranging from transient selection for follow-up to studies of transient environments.
description: 15 pages, 11 figures
title: DEPRECATED: INVESTIGATING THE ROLE OF TAM (TYRO3, AXL AND MERTK) FAMILY RECEPTORS IN MERLIN-DEFICIENT TUMOURS
Creators: name: Dave, Foram
Publisher: name: University of Plymouth
Year: 2020
Subjects: subject: NF2
subject: Schwannomas
subject: Meningiomas
subject: PhD

description: Mutations in the NF2 gene, which codes for the tumour suppressor Merlin, is responsible for the development of all Neurofibromatosis Type 2 (NF2)-related tumours including schwannomas, meningiomas and ependymomas. These tumours can also occur spontaneously in non-NF2 patients. The only available treatments for this group of tumours are surgery and radiosurgery/radiotherapy. Hence, there is an urgent need for new effective drug-based treatments. TAM (TYRO3, AXL and MERTK) family receptors are involved in tumour development, progression, metastasis and resistance to targeted therapies in several cancers. Our group previously showed overexpression and hyper-activation of all three TAM family receptors and their ligand Gas6 in schwannomas. The key role of AXL in promoting tumour development by altering proliferation, adhesion and survival of human schwannoma primary cells in vitro was also established. The aim of this project is to explore the role of TYRO3 and MERTK in schwannomas’ and all three TAM members in meningiomas’ pathogenesis. Western blotting demonstrated that AXL, MERTK, TYRO3 and their ligand Gas6 are highly expressed and activated in Merlin-deficient meningioma tissues and cells. The expression of AXL, MERTK and TYRO3, but not Gas6, appear to be Merlin-dependent in meningiomas. MERTK forms a complex with TYRO3 but not with AXL in both meningioma and schwannoma tissues, and its expression is mandatory to maintain AXL and TYRO3 levels in both cell-types. MERTK and AXL contribute to increased proliferation and survival of schwannoma and meningioma cells in vitro. MERTK acts via JNK, FAK and cyclin-D1 in meningiomas, and via JNK, AKT, FAK and cyclin-D1 in schwannomas. Pathological proliferation and survival of both cell-types was successfully reversed by AXL inhibitor BGB324 and MERTK inhibitor UNC2025 in vitro, with UNC2025 being more effective. TYRO3 had no effect on cell proliferation of either schwannoma or meningioma cells. In conclusion, AXL and MERTK are important in schwannoma and meningioma pathogenesis and are potentially good therapeutic targets. MERTK inhibitor UNC2025 has the potential to be used as a common candidate for the treatment of NF2-related tumours.
NNLL-fast 2.0: Coloured Sparticle Production at the LHC Run 3 with $\sqrt{S}$ = 13.6 TeV
Creators: name: Beenakker, Wim
name: Borschensky, Christoph
name: Krämer, Michael
name: Kulesza, Anna
name: Laenen, Eric
name: Mamužić, Judita
name: Valero, Laura Moreno
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: We report on updated precision predictions for total cross sections of coloured supersymmetric particle production at the LHC with a centre-of-mass energy of $\sqrt S$ = 13.6 TeV, computed with the modern PDF4LHC21 set. The cross sections are calculated at an approximated NNLO accuracy in QCD and contain corrections from the threshold resummation of soft-gluon emission up to NNLL accuracy as well as Coulomb-gluon contributions including bound-state terms. The corrections are found to increase the cross sections and reduce the theoretical uncertainty as compared to the best available fixed-order calculations. These predictions constitute the state-of-the-art calculations and update the existing results for $\sqrt S$ = 13 TeV. We make our new results publicly available in the version 2.0 update to the code package NNLL-fast.
description: 40 pages, 9 figures; NNLL-fast code available from https://www.uni-muenster.de/Physik.TP/~akule_01/nnllfast; matches version published in SciPost PhysCore
Tutorial Series on Java Framework for Evolutionary Computation and Decision Making. Tutorial 9: Facilitating the usage
Creators: name: Tomczyk, Michał
Publisher: name: Zenodo
Year: 2025
Subjects: JECDM
Evolutionary Algorithms
Visualization

description: This tutorial overviews the new update to JECDM that intends to facilitate the usage of its several components, primarily instantiating the plots and evolutionary algorithms.
The Griffiths phase and beyond: A large deviations study of the magnetic susceptibility of the two-dimensional bond-diluted Ising model
Creators: name: Münster, Lambert
name: Hartmann, Alexander K.
name: Weigel, Martin
Publisher: name: arXiv
Year: 2024
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: The Griffiths phase in systems with quenched disorder occurs below the ordering transition of the pure system down to the ordering transition of the actual disordered system. While it does not exhibit long-range order, large fluctuations in the disorder degrees of freedom result in exponentially rare, long-range ordered states and hence the occurrence of broad distributions in response functions. Inside the Griffiths phase of the two-dimensional bond-diluted Ising model the distribution of the magnetic susceptibility is expected to have such a broad, exponential tail. A large-deviations Monte Carlo algorithm is used to sample this distribution and the exponential tail is extracted over a wide range of the support down to very small probabilities of the order of $10^{-300}$. We study the behavior of the susceptibility distribution across the full phase diagram, from the paramagnetic state through the Griffiths phase to the ferromagnetically ordered system and down to the zero-temperature point. We extract the rate function of large-deviation theory as well as its finite-size scaling behavior and we reveal interesting differences and similarities between the cases. A connection between the fraction of ferromagnetic bonds in a given disorder sample and the size of the magnetic susceptibility is demonstrated numerically.
description: 16 pages, 19 figures, RevTeX4.2, version accepted for publication
Multiple crossing during dynamical symmetry restoration and implications for the quantum Mpemba effect
Creators: name: Chalas, Konstantinos
name: Ares, Filiberto
name: Rylands, Colin
name: Calabrese, Pasquale
Publisher: name: arXiv
Year: 2024
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Local relaxation after a quench in 1-D quantum many-body systems is a well known and very active problem with rich phenomenology. Except for pathological cases, the local relaxation is accompanied by the local restoration of the symmetries broken by the initial state that are preserved by the unitary evolution. Recently, the entanglement asymmetry has been introduced as a probe to study the interplay between symmetry breaking and relaxation in an extended quantum system. In particular, using the asymmetry, it has been shown that the more a symmetry is initially broken, the faster it may be restored. This surprising effect, which has been also observed in trapped-ion experiments, can be seen as a quantum version of the Mpemba effect and is manifested by the crossing at a finite time of the entanglement asymmetry curves of two different initial symmetry breaking configurations. In this paper we show, how, by tuning the initial state, the symmetry dynamics in free fermionic systems can display much richer behaviour than seen previously. In particular, for certain classes of initial states, including ground states of free fermionic models with long-range couplings, the entanglement asymmetry can exhibit multiple crossings. This illustrates that the existence of the quantum Mpemba effect can only be inferred by examining the late time behaviour of the entanglement asymmetry.
description: 25 pages, 5 figures
Three-dimensional higher-order saddle points induced flat bands in Co-based kagome metals
Creators: name: Tan, Hengxin
name: Jiang, Yiyang
name: McCandless, Gregory T.
name: Chan, Julia Y.
name: Yan, Binghai
Publisher: name: arXiv
Year: 2024
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: The saddle point (van Hove singularity) exhibits a divergent density of states in 2D systems, leading to fascinating phenomena like strong correlations and unconventional superconductivity, yet it is seldom observed in 3D systems. In this work, we have found two types of 3D higher-order saddle points (HOSPs) in emerging 3D kagome metals, YbCo$_6$Ge$_6$ and MgCo$_6$Ge$_6$. Both HOSPs exhibit a singularity in their density of states, which is significantly enhanced compared to the ordinary saddle point. The HOSP near the Fermi energy generates a flat band extending a large area in the Brillouin zone, potentially amplifying the correlation effect and fostering electronic instabilities. Two types of HOSPs exhibit distinct robustness upon element substitution and lattice distortions in these kagome compounds. Our work paves the way for engineering exotic band structures, such as saddle points and flat bands, and exploring interesting phenomena in Co-based kagome materials.
description: 5 main pages + 17 Supplementary pages
Experimental demonstration of a versatile and scalable scheme for iterative generation of non-Gaussian states of light
Creators: name: Simon, Hector
name: Caron, Lucas
name: Journet, Romaric
name: Cotte, Viviane
name: Tualle-Brouri, Rosa
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Non-Gaussian states of light, such as GKP states, are essential resources for optical continuous-variable quantum computing. The ability to efficiently produce these states would open up tremendous prospects for quantum technologies in general and fault-tolerant quantum computing in particular. This letter demonstrates a versatile method using a quantum memory cavity to overcome the probabilistic nature of the breeding protocols and generate non-Gaussian states at high rates with scalability perspectives. The performances of our experimental setup are illustrated with the generation of Schrödinger cat states of amplitude alpha = 1.63 with a fidelity of more than 60% at a generation rate in the kHz range, which is higher than the state of the art for such states.
description: 4 pages, 4 figures
Additional file 1 of Genetic determinants of Biofilm formation of Helicobacter pylori using whole-genome sequencing
Creators: name: Fauzia, Kartika Afrida
name: Aftab, Hafeza
name: Miftahussurur, Muhammad
name: Waskito, Langgeng Agung
name: Tuan, Vo Phuoc
name: Alfaray, Ricky Indra
name: Matsumoto, Takashi
name: Yurugi, Michiyuki
name: Subsomwong, Phawinee
name: Kabamba, Evariste Tshibangu
name: Akada, Junko
name: Yamaoka, Yoshio
Publisher: name: figshare
Year: 2024
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences

description: Supplementary Material 1
Supplemental Material, SLGR_19-0057R3,_Text_1_Supplement_(1) - What Drives Municipal Capital Investment? A Long-panel Data Analysis of U.S. Central Cities
Creators: name: Chen, Can
name: Han, Yanbing
name: Frank, Howard A.
Publisher: name: SAGE Journals
Year: 2020
Subjects: International Relations
Public Administration

description: Supplemental Material, SLGR_19-0057R3,_Text_1_Supplement_(1) for What Drives Municipal Capital Investment? A Long-panel Data Analysis of U.S. Central Cities by Can Chen, Yanbing Han and Howard A. Frank in State and Local Government Review
Representation theory of skew braces
Creators: name: Kozakai, Yuta
name: Tsang, Cindy
Publisher: name: arXiv
Year: 2024
Subjects: subject: Representation Theory (math.RT)
subject: Group Theory (math.GR)
subject: Quantum Algebra (math.QA)
subject: FOS: Mathematics
subject: 20C15, 20C20, 20C05, 16T25

description: According to Letourmy and Vendramin, a representation of a skew brace is a pair of representations on the same vector space, one for the additive group and the other for the multiplicative group, that satisfies a certain compatibility condition. Following their definition, we shall explain how some of the results from representation theory of groups, such as Maschke's theorem and Clifford's theorem, extend naturally to that of skew braces. We shall also give some concrete examples to illustrate that skew brace representations are more difficult to classify than group representations.
description: 20 pages; significantly rewritten
RIGEL: Simulating dwarf galaxies at solar mass resolution with radiative transfer and feedback from individual massive stars
Creators: name: Deng, Yunwei
name: Li, Hui
name: Liu, Boyuan
name: Kannan, Rahul
name: Smith, Aaron
name: Bryan, Greg L.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: We introduce the RIGEL model, a novel framework to self-consistently model the effects of stellar feedback in the multiphase ISM of dwarf galaxies with radiative transfer (RT) on a star-by-star basis. The RIGEL model integrates detailed implementations of feedback from individual massive stars into the RHD code, AREPO-RT. It forms individual massive stars from the resolved multiphase ISM by sampling the IMF and tracks their evolution individually. The lifetimes, photon production rates, mass-loss rates, and wind velocities of these stars are determined by their initial masses and metallicities based on a library that incorporates a variety of stellar models. The RT equations are solved in seven spectral bins accounting for the IR to HeII ionizing bands, using an M1 RT scheme. The thermochemistry model tracks the non-equilibrium H, He chemistry and the equilibrium abundance of CI, CII, OI, OII, and CO to capture the thermodynamics of all ISM phases. We evaluated the performance of the RIGEL model using $1\,{\rm M}_\odot$ resolution simulations of isolated dwarf galaxies. We found that the SFR and ISRF show strong positive correlations to the metallicity of the galaxy. Photoionization and photoheating can reduce the SFR by an order of magnitude by removing the available cold-dense gas fuel for star formation. The ISRF also changes the thermal structure of the ISM. Radiative feedback occurs immediately after the birth of massive stars and rapidly disperses the molecular clouds within 1 Myr. As a consequence, radiative feedback reduces the age spread of star clusters to less than 2 Myr, prohibits the formation of massive star clusters, and shapes the cluster initial mass function to a steep power-law form with a slope of $\sim-2$. The mass-loading factor of the fiducial galaxy has a median of $\sim50$, while turning off radiative feedback reduces this factor by an order of magnitude.
description: 27 pages, 18 figures; A&A in press; abstract slightly abridged; comments welcome
Additional file 1 of Gut microbiome diversity and composition is associated with exploratory behavior in a wild-caught songbird
Creators: name: Florkowski, Melanie R.
name: Yorzinski, Jessica L.
Publisher: name: figshare
Year: 2024
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Physiology
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified

description: Additional file 1. Figure S1 and Tables S1–S5 providing additional details on the novel enviornment design and reporting statistical results and supplementary microbiome analyses.
authorship_change_request – Supplemental material for Comparison of Serenoa repens With Tamsulosin in the Treatment of Benign Prostatic Hyperplasia: A Systematic Review and Meta-Analysis
Creators: name: Cai, Tong
name: Cui, Yuanshan
name: Yu, Shaoxia
name: Li, Qian
name: Zhou, Zhongbao
name: Gao, Zhenli
Publisher: name: SAGE Journals
Year: 2020
Subjects: Health and Community Services
Nursing not elsewhere classified
Public Health and Health Services not elsewhere classified

description: Supplemental material, authorship_change_request for Comparison of Serenoa repens With Tamsulosin in the Treatment of Benign Prostatic Hyperplasia: A Systematic Review and Meta-Analysis by Tong Cai, Yuanshan Cui, Shaoxia Yu, Qian Li, Zhongbao Zhou and Zhenli Gao in American Journal of Men's Health
Fully Automated OCT-based Tissue Screening System
Creators: name: Pi, Shaohua
name: Ganjee, Razieh
name: Wang, Lingyun
name: Arbuckle, Riley K.
name: Zhao, Chengcheng
name: Sahel, Jose A
name: Wang, Bingjie
name: Chen, Yuanyuan
Publisher: name: arXiv
Year: 2024
Subjects: subject: Medical Physics (physics.med-ph)
subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: This study introduces a groundbreaking optical coherence tomography (OCT) imaging system dedicated for high-throughput screening applications using ex vivo tissue culture. Leveraging OCT's non-invasive, high-resolution capabilities, the system is equipped with a custom-designed motorized platform and tissue detection ability for automated, successive imaging across samples. Transformer-based deep learning segmentation algorithms further ensure robust, consistent, and efficient readouts meeting the standards for screening assays. Validated using retinal explant cultures from a mouse model of retinal degeneration, the system provides robust, rapid, reliable, unbiased, and comprehensive readouts of tissue response to treatments. This fully automated OCT-based system marks a significant advancement in tissue screening, promising to transform drug discovery, as well as other relevant research fields.
Supplementary_Material – Supplemental material for The Effects of the Growing Pro-Social Program on Early Maladaptive Schemas and Schema-Related Emotions in Male Young Offenders: A Nonrandomized Trial
Creators: name: Rijo, Daniel
name: Miguel, Rita Ramos
name: Paulo, Marlene
name: Nélio Brazão
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 160299 Criminology not elsewhere classified
subject: FOS: Law

description: Supplemental material, Supplementary_Material for The Effects of the Growing Pro-Social Program on Early Maladaptive Schemas and Schema-Related Emotions in Male Young Offenders: A Nonrandomized Trial by Daniel Rijo, Rita Ramos Miguel, Marlene Paulo and Nélio Brazão in International Journal of Offender Therapy and Comparative Criminology
TPS916697 Supplemental Material1 - Supplemental material for Treating immigrant patients in psychiatric emergency rooms
Creators: name: Collazos, Francisco
name: Malagón-Amor, Ángeles
name: Falgas-Bague, Irene
name: Qureshi, Adil
name: Gines, Jose Maria
name: del Mar Ramos, Maria
name: McPeck, Samantha
name: Hussain, Isra
name: Wang, Ye
name: Alegría, Margarita
Publisher: name: SAGE Journals
Year: 2020
Subjects: Psychology not elsewhere classified
Psychiatry (incl. Psychotherapy)

description: Supplemental material, TPS916697 Supplemental Material1 for Treating immigrant patients in psychiatric emergency rooms by Francisco Collazos, Ángeles Malagón-Amor, Irene Falgas-Bague, Adil Qureshi, Jose Maria Gines, Maria del Mar Ramos, Samantha McPeck, Isra Hussain, Ye Wang and Margarita Alegría in Transcultural Psychiatry
BJO904339 Supplemental Material4 - Supplemental material for Early non-invasive brain stimulation with modified constraint-induced movement therapy for motor and functional upper limb recovery in stroke patients: Study protocol
Creators: name: Garrido, Maricel A
name: Άlvarez, Evelyn A
name: Acevedo, Fabrizio L
name: Moyano, Álvaro I
name: Castillo, Natalia P
name: Cavada, Gabriel A
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 111708 Health and Community Services
subject: FOS: Health sciences
subject: 110314 Orthopaedics
subject: FOS: Clinical medicine
subject: 110604 Sports Medicine
subject: 111702 Aged Health Care

description: Supplemental material, BJO904339 Supplemental Material4 for Early non-invasive brain stimulation with modified constraint-induced movement therapy for motor and functional upper limb recovery in stroke patients: Study protocol by Maricel A Garrido, Evelyn A Άlvarez, Fabrizio L Acevedo, Álvaro I Moyano, Natalia P Castillo and Gabriel A Cavada in British Journal of Occupational Therapy
A molecular perspective on the emergence of long-range polar order from an isotropic fluid
Creators: name: Erkoreka, Aitor
name: Sebastián, Nerea
name: Mertelj, Alenka
name: Martinez-Perdiguero, Josu
Publisher: name: arXiv
Year: 2024
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: The ferroelectric nematic phase (N$_{\text{F}}$) has quickly become the most studied system in liquid crystal research. In this work, we investigate the origin of such polar structure by studying a compound for which the N$_{\text{F}}$ phase directly follows the isotropic liquid phase on cooling, making it a particularly interesting system. Our experimental results evidence the presence of polar correlations already in the high-temperature phase, in which ferroelectric order can be induced under a sufficiently strong electric field. In the N$_{\text{F}}$ phase, molecular dynamics and polar correlations are investigated through detailed dynamic dielectric measurements, while second harmonic generation experiments evidence a large value of the main coefficient of the second order dielectric susceptibility tensor. Lastly, experimentally determined parameters are employed for calculations based on a recently proposed theoretical model for the stability of the N$_{\text{F}}$ phase. The obtained results suggest that the parallel alignment of dipoles is driven by a subtle interplay between electrostatic and excluded volume interactions.
Data Collection in Cyber Exercises Through Monitoring Points: Observing, Steering, and Scoring
Creators: name: Pfaller, Tobias
name: Skopik, Florian
name: Reuter, Lenhard
name: Leitner, Maria
Publisher: name: Universität Regensburg
Year: 2025
Subjects: subject: Cyber Exercise, Cyber Exercise Scenario, Participant Observation, Activity Monitoring, Cyber Exercise Evaluation, Cyber Scenario Steering Innovative Security Awareness and Education; Security and Privacy Metrics; Threat Awareness; Vulnerability Analysis and Countermeasures
subject: 004 Informatik

description: Cyber security exercises are an essential means to train people and increase their skill levels in IT operations, cyber incident response, and forensic investigations. Unfortunately, carrying out high-quality exercises requires tremendous human effort in planning, deploying, executing and evaluating well-planned cyber exercise scenarios. While planning a scenario is often only a one time effort, and deployment can be highly automatized today, their repeated execution and evaluation is a resource-intensive task. Usually human experts manually observe the participants to recognize any difficulties in carrying out the exercise and to keep track of the participants’ progress. This is an essential prerequisite to not only support participants during the exercise, but also to drive the scenario further through timely injects, and provide feedback after the exercise. All this manual effort makes exercises a costly activity, reduces scalability and hinders their wide adoption. We argue that with automating observations, recognizing participant progress with only little to no human effort, and even steering the delivery of customized injects, cyber exercises could be carried out much more cost-effective. In this paper, we therefore introduce the concept of monitoring points which enable the scenario-dependent collection of technical data and the calculation of behavior and progress metrics to rate participants in exercises. This is the foundational basis for steering an exercise on the one side, and evaluation on the other side. We showcase our concept and implementation in course of a demonstrator consisting of a cyber exercise comprising 14 participants and discuss its applicability.
859148_supp_mat – Supplemental material for Multi-disciplinary palliative care is effective in people with symptomatic heart failure: A systematic review and narrative synthesis
Creators: name: Datla, Sushma
name: Verberkt, Cornelia Antonia
name: Hoye, Angela
name: Janssen, Daisy J.A.
name: Johnson, Miriam J
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 110308 Geriatrics and Gerontology
subject: FOS: Clinical medicine
subject: 111702 Aged Health Care
subject: FOS: Health sciences

description: Supplemental material, 859148_supp_mat for Multi-disciplinary palliative care is effective in people with symptomatic heart failure: A systematic review and narrative synthesis by Sushma Datla, Cornelia Antonia Verberkt, Angela Hoye, Daisy J.A. Janssen and Miriam J Johnson in Palliative Medicine
Additional file 1 of Development and validation of the Nurse Team Resilience Scale (NTRS) in the context of public health emergencies
Creators: name: Su, Ya
name: Wang, Lin
name: Chen, Tangyu
name: Liao, Liwen
name: Hu, SanLian
name: Yang, Yan
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Biotechnology
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Developmental Biology
Science Policy

description: Supplementary Material 1: Table S1. Demographics information about experts and cognitive interview participants. Table S2. Final Development of the Instrument. Table S3. Distribution of demographic characteristics. Figure S1. Scree plot obtained from EFA for the scale.
USJ852033_supplemental_material – Supplemental material for Mobility among older adults: Deconstructing the effects of motility and movement on wellbeing
Creators: name: Cuignet, Timothée
name: Perchoux, Camille
name: Caruso, Geoffrey
name: Klein, Olivier
name: Klein, Sylvain
name: Chaix, Basile
name: Kestens, Yan
name: Gerber, Philippe
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 160299 Criminology not elsewhere classified
subject: FOS: Law
subject: Economics
subject: Geography
subject: 160607 International Relations
subject: FOS: Political science
subject: Sociology
subject: FOS: Sociology
subject: 120599 Urban and Regional Planning not elsewhere classified
subject: FOS: Social and economic geography

description: Supplemental material, USJ852033_supplemental_material for Mobility among older adults: Deconstructing the effects of motility and movement on wellbeing by Timothée Cuignet, Camille Perchoux, Geoffrey Caruso, Olivier Klein, Sylvain Klein, Basile Chaix, Yan Kestens and Philippe Gerber in Urban Studies
Phase-space negativity as a computational resource for quantum kernel methods
Creators: name: Chabaud, Ulysse
name: Ghobadi, Roohollah
name: Beigi, Salman
name: Rahimi-Keshari, Saleh
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Quantum kernel methods are a proposal for achieving quantum computational advantage in machine learning. They are based on a hybrid classical-quantum computation where a function called the quantum kernel is estimated by a quantum device while the rest of computation is performed classically. Quantum advantages may be achieved through this method only if the quantum kernel function cannot be estimated efficiently on a classical computer. In this paper, we provide sufficient conditions for the efficient classical estimation of quantum kernel functions for bosonic systems. These conditions are based on phase-space properties of data-encoding quantum states associated with the quantum kernels: negative volume, non-classical depth, and excess range, which are shown to be three signatures of phase-space negativity. We consider quantum optical examples involving linear-optical networks with and without adaptive non-Gaussian measurements, and investigate the effects of loss on the efficiency of the classical simulation. Our results underpin the role of the negativity in phase-space quasi-probability distributions as an essential resource in quantum machine learning based on kernel methods.
Additional file 1 of Drivers and constraints to environmental sustainability in UK-based biobanking: balancing resource efficiency and future value
Creators: name: Samuel, Gabrielle
name: Sims, Jessica M
Publisher: name: figshare
Year: 2024
Subjects: subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional File: Survey of sample & data storage practices: biobanks & health research data repositories
Machine learning of quantum channels on NISQ devices
Creators: name: Cemin, Giovanni
name: Cech, Marcel
name: Weiss, Erik
name: Soltan, Stanislaw
name: Braun, Daniel
name: Lesanovsky, Igor
name: Carollo, Federico
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Physics (quant-ph)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: World-wide efforts aim at the realization of advanced quantum simulators and processors. However, despite the development of intricate hardware and pulse control systems, it may still not be generally known which effective quantum dynamics, or channels, are implemented on these devices. To systematically infer those, we propose a neural-network algorithm approximating generic discrete-time dynamics through the repeated action of an effective quantum channel. We test our approach considering time-periodic Lindblad dynamics as well as non-unitary subsystem dynamics in many-body unitary circuits. Moreover, we exploit it to investigate cross-talk effects on the ibmq_ehningen quantum processor, which showcases our method as a practically applicable tool for inferring quantum channels when the exact nature of the underlying dynamics on the physical device is not known a priori. While the present approach is tailored for learning Markovian dynamics, we discuss how it can be adapted to also capture generic non-Markovian discrete-time evolutions.
description: 6+8 pages, 5+5 figures, comments welcome
Additional file 1 of A consortia of clinical E. coli strains with distinct in vitro adherent/invasive properties establish their own co-colonization niche and shape the intestinal microbiota in inflammation-susceptible mice
Creators: name: Bleich, Rachel M.
name: Li, Chuang
name: Sun, Shan
name: Ahn, Ju-Hyun
name: Dogan, Belgin
name: Barlogio, Cassandra J.
name: Broberg, Christopher A.
name: Franks, Adrienne R.
name: Bulik-Sullivan, Emily
name: Carroll, Ian M.
name: Simpson, Kenneth W.
name: Fodor, Anthony A.
name: Arthur, Janelle C.
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Science Policy
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. Supplementary Methods.
Conception and Implementation of a Pharmacogenomic Plausibility Check: Integrating Molecular Data to Optimize Established Drug Therapy Safety Workflows
Creators: name: Raupach, Lena
Publisher: name: Universität Bielefeld
Year: 2025
Subjects: subject: 610

description: In recent years, there has been a notable expansion in the accessibility of high-quality pharmacogenomic knowledge and research exploring its advantages. The increasing availability of freely accessible information on drug-gene interactions enables the use of such data for a plausibility check during the prescribing process, thereby enhancing the safety of drug therapy. By conducting a pre-emptive test of the genotype of relevant enzymes, the result can be incorporated into the patient profile in advance, in a manner analogous to the inclusion of other patient characteristics.
In this study, the existing ID PHARMA CHECK® software from ID Berlin, which is used in numerous hospital information systems to enhance the precision of drug therapy, is enhanced with a molecular component. The new data warehouse, GraphSAW2, is used to collate the pharmacogenomic knowledge. A pharmacogenomic plausibility check will be conceptualised and developed using the newly collected knowledge. New methods for the extraction, storage and processing of pharmacogenomic knowledge, along with an infrastructure for the storage of genomic patient data, will be developed. The results will be presented to healthcare professionals in a consistent format, modelled on other existing drug plausibility warnings. The introduction of a new severity level for each pharmacogenomic alert allows for optimised prioritisation, effectively avoiding the problem of over-validation. The implementation of this new approach to evaluating drug therapy safety at the molecular level in hospitals represents a significant advance in the era of precision medicine.
title: DEPRECATED: From the Secret Garden to the Panopticon? Changing freedoms and the growing crisis in primary school headteacher recruitment.
Creators: name: Hodson, Paul
Publisher: name: University of Plymouth
Year: 2018
Subjects: subject: Headteacher recruitment
subject: Secret garden
subject: Changing freedoms
subject: Panopticism
subject: Other (e.g., MD, EdD, DBA, DClinPsy)

description: Edited version embargoed until 23.01.2019 Full version: Access restricted permanently due to 3rd party copyright restrictions. Restriction set on 23.01.2018 by SE, Doctoral College
description: A headteacher recruitment crisis continues in the primary education sector (Howson & Sprigate, 2011; Rhodes et al., 2008). This research offers a voice for an increasingly marginalised group and synthesises the experiences of 15 primary headteachers, including retired, experienced and new school leaders against the changing educational scenery of four decades. An extended metaphor describing a changing epistemological landscape is utilised (Pascale, 2011), including dramaturgical discourse (Goffman, 1974). The research assesses whether the lived experiences of school leaders evidence a supposed movement away from the ‘freedom’ of the ‘secret garden’ of the pre-National Curriculum era to a time of reducing freedoms for headteachers under a central panoptic gaze (Foucault 1979; Ball 2006) and then to a new ‘supported autonomy’ as suggested by ‘Education Excellence Everywhere’ (DfE, 2016). The thesis assesses the capacity of phenomenological methodology to address the research questions and distinctions are made between approaches to phenomenology. A case is made for ensuring critical rationalism within the methodology and difficulties of attaining ‘epoche’ and ‘phenomenological reduction’ are debated. Findings support the view that there have been significant changes to headship over time. Analysis of these changes does not support the concept of a linear movement from a time of freedom to a landscape defined by Panopticism. The research suggests that a new paradigmatic shift is significantly changing the nature of primary headship with new forms of executive leadership and structures for leadership progression. Recommendations call for a reduction in the frequency of change for school leaders, a simplification of the inspection grading system, provision of clearer pathways to headship and greater support for school leaders as local authority services decline and safeguarding for leaders from the growth of social media abuse. This research offers a unique insight into headship and addresses an identified gap in educational research.