cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Adaptation of olfactory receptor abundances for efficient coding
Creators: name: Tesileanu, Tiberiu
name: Cocco, Simona
name: Monasson, Remi
name: Balasubramanian, Vijay
Publisher: name: arXiv
Year: 2018
Subjects: subject: Neurons and Cognition (q-bio.NC)
subject: Biological Physics (physics.bio-ph)
subject: FOS: Biological sciences
subject: FOS: Physical sciences

description: Olfactory receptor usage is highly heterogeneous, with some receptor types being orders of magnitude more abundant than others. We propose an explanation for this striking fact: the receptor distribution is tuned to maximally represent information about the olfactory environment in a regime of efficient coding that is sensitive to the global context of correlated sensor responses. This model predicts that in mammals, where olfactory sensory neurons are replaced regularly, receptor abundances should continuously adapt to odor statistics. Experimentally, increased exposure to odorants leads variously, but reproducibly, to increased, decreased, or unchanged abundances of different activated receptors. We demonstrate that this diversity of effects is required for efficient coding when sensors are broadly correlated, and provide an algorithm for predicting which olfactory receptors should increase or decrease in abundance following specific environmental changes. Finally, we give simple dynamical rules for neural birth and death processes that might underlie this adaptation.
description: 36 pages, 13 figures
Justification as Truth-Finding Efficiency: How Ockham’s Razor Works
Creators: name: Kelly, Kevin T.
Publisher: name: Carnegie Mellon University
Year: 2004
Subjects: subject: Philosophy
subject: FOS: Philosophy, ethics and religion

description: I propose that empirical procedures, like computational procedures, are justified in terms of truth-finding efficiency. I contrast the idea with more standard philosophies of science and illustrate it by deriving Ockham’s razor from the aim of minimizing dramatic changes of opinion en route to the truth.
Re-description and phylogenetic relationships of †Protosyngnathus sumatrensis (Teleostei: Syngnathoidei), a freshwater pipefish from the Eocene of Sumatra, Indonesia
Creators: name: Murray, Alison M.
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Science Policy

description: †Protosyngnathus sumatrensis is known from six specimens from Eocene lacustrine deposits of the Sangkarawang Formation of Sumatra, Indonesia. The fish was named almost 150 years ago, but has never been well described or figured. Probably because of this, it has not been included in phylogenies of extant pipefishes and seahorses (Syngnathiformes). A detailed description is provided, along with a new phylogenetic analysis of morphological characters that allows the Eocene fish to be confidently placed with the extant families Syngnathidae (pipefishes and seahorses) and Solenostomidae (ghost seahorses) along with the Paleocene marine fossil †Eekaulostomus cuevasae from Mexico. The vast majority of these fishes are marine inhabitants, with a few syngnathids entering brackish or freshwater habitats. †Protosyngnathus documents the occurrence of syngnathiform fishes in a lacustrine environment, indicating that this lineage invaded and became adapted to the freshwater environment early in the evolution of this group.
Additional file 1 of Are physical symptoms among survivors of a disaster presented to the general practitioner? A comparison between self-reports and GP data
Creators: name: van den Berg, Bellis
name: Yzermans, C Joris
name: van der Velden, Peter G
name: Stellato, Rebecca K
name: Lebret, Erik
name: Grievink, Linda
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Science Policy
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Authors’ original file for figure 1
On the definition of temperature in FPU systems
Creators: name: Carati, A.
name: Cipriani, P.
name: Galgani, L.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: It is usually assumed, in classical statistical mechanics, that the temperature should coincide, apart from a suitable constant factor, with the mean kinetic energy of the particles. We show that this is not the case for \FPU systems, in conditions in which energy equipartition between the modes is not attained. We find that the temperature should be rather identified with the mean value of the energy of the low frequency modes.
description: 12 pages, 4 Figures
Bayesian Partition Models for Identifying Expression Quantitative Trait Loci
Creators: name: Jiang, Bo
name: S. Liu, Jun
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences

description: Expression quantitative trait loci (eQTLs) are genomic locations associated with changes of expression levels of certain genes. By assaying gene expressions and genetic variations simultaneously on a genome-wide scale, scientists wish to discover genomic loci responsible for expression variations of a set of genes. The task can be viewed as a multivariate regression problem with variable selection on both responses (gene expression) and covariates (genetic variations), including also multi-way interactions among covariates. Instead of learning a predictive model of quantitative trait given combinations of genetic markers, we adopt an inverse modeling perspective to model the distribution of genetic markers conditional on gene expression traits. A particular strength of our method is its ability to detect interactive effects of genetic variations with high power even when their marginal effects are weak, addressing a key weakness of many existing eQTL mapping methods. Furthermore, we introduce a hierarchical model to capture the dependence structure among correlated genes. Through simulation studies and a real data example in yeast, we demonstrate how our Bayesian hierarchical partition model achieves a significantly improved power in detecting eQTLs compared to existing methods. Supplementary materials for this article are available online.
Efficient size-prescribed $k$-core search
Creators: name: Liu, Yiping
name: Yan, Bo
name: Zhao, Bo
name: Su, Hongyi
name: Chen, Yang
name: Witbrock, Michael
Publisher: name: arXiv
Year: 2024
Subjects: subject: Data Structures and Algorithms (cs.DS)
subject: FOS: Computer and information sciences

description: $k$-core is a subgraph where every node has at least $k$ neighbors within the subgraph. The $k$-core subgraphs has been employed in large platforms like Network Repository to comprehend the underlying structures and dynamics of the network. Existing studies have primarily focused on finding $k$-core groups without considering their size, despite the relevance of solution sizes in many real-world scenarios. This paper addresses this gap by introducing the size-prescribed $k$-core search (SPCS) problem, where the goal is to find a subgraph of a specified size that has the highest possible core number. We propose two algorithms, namely the {\it TSizeKcore-BU} and the {\it TSizeKcore-TD}, to identify cohesive subgraphs that satisfy both the $k$-core requirement and the size constraint. Our experimental results demonstrate the superiority of our approach in terms of solution quality and efficiency. The {\it TSizeKcore-BU} algorithm proves to be highly efficient in finding size-prescribed $k$-core subgraphs on large datasets, making it a favorable choice for such scenarios. On the other hand, the {\it TSizeKcore-TD} algorithm is better suited for small datasets where running time is less critical.
Rumor Mitigation in Social Media Platforms with Deep Reinforcement Learning
Creators: name: Su, Hongyuan
name: Zheng, Yu
name: Ding, Jingtao
name: Jin, Depeng
name: Li, Yong
Publisher: name: arXiv
Year: 2024
Subjects: subject: Social and Information Networks (cs.SI)
subject: FOS: Computer and information sciences
subject: 68T09

description: Social media platforms have become one of the main channels where people disseminate and acquire information, of which the reliability is severely threatened by rumors widespread in the network. Existing approaches such as suspending users or broadcasting real information to combat rumors are either with high cost or disturbing users. In this paper, we introduce a novel rumor mitigation paradigm, where only a minimal set of links in the social network are intervened to decelerate the propagation of rumors, countering misinformation with low business cost and user awareness. A knowledge-informed agent embodying rumor propagation mechanisms is developed, which intervenes the social network with a graph neural network for capturing information flow in the social media platforms and a policy network for selecting links. Experiments on real social media platforms demonstrate that the proposed approach can effectively alleviate the influence of rumors, substantially reducing the affected populations by over 25%. Codes for this paper are released at https://github.com/tsinghua-fib-lab/DRL-Rumor-Mitigation.
description: WWW24 short
Graphite to AlB2 and MgB2: a comparative study of their tight-binding model and Dirac nodal line
Creators: name: Cheng, Cai
name: Duan, Man-Yi
name: Xu, Wen-Xuan
name: Wang, Zhao
name: Zhou, Xiao-Lin
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified

description: Recently, the AlB2-type compounds such as AlB2 and MgB2 have attracted immense interest due to the Dirac Nodal Line (DNL). This unique electronic structure is very important for the design and discovery of topological superconductivity, but the DNL of AlB2-type compounds has not been unambiguously comparative studied. Here, we systematically investigated the electronic topological properties of AlB2 and MgB2 by tight-binding model analysis and first-principles calculations. The Slater–Koster method fitted band structure results showed that the slope of σ-bond in Γ-A direction was mainly controlled by the absolute value of Vppπ. Moreover, the band structure fitted by two pz Symmetry-Adapted Wannier Function (SAWF) was consistent with the band structure obtained by the effective Hamiltonian of two orbital. In the constructed effective Hamiltonian, the external on-site energies in MgB2 and AlB2 were 0.075 and 2.47 eV, respectively, which were mainly due to the distance between Fermi level and Dirac point at the high-symmetry K and H points. More strikingly, it was found that the degree of bending of the topological surface state was related to the number of the selected orbits, and the larger the number of orbits, the stronger the degree of bending. This important finding might be due to the asymmetry of the crystal structure and band structure. This work provides a meaningful reference for exploration of the topological property of DNL in AlB2-type topological superconductivity materials.
Demonstration of universal contextuality through communication games free of both operational inequivalence and compatibility loopholes
Creators: name: Fan, Xuan
name: Xiao, Ya
name: Gu, Yongjian
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Universal contextuality is the leading notion of non-classicality even for single systems, showing its advantage as a more general quantum correlation than Bell non-locality, as well as preparation contextuality. However, a loophole-free experimental demonstration of universal contextuality at least requires that both operational inequivalence and compatibility loopholes are closed, which have never been simultaneously achieved to date. In our work, we experimentally test universal contextuality through (3,3) and (4,3) communication games, simultaneously restoring operational equivalence and circumventing the compatibility loophole. Our result exhibits the violation of universal non-contextuality bound by 97 standard deviations in (3,3) scenario, and 107 deviations in (4,3) scenario. Notably there are states which exhibit locality but reveal universal contextuality in both two scenarios. In addition, our result shows that universal contextuality is more general than preparation contextuality in (3,3) scenario, while equivalent to preparation contextuality in (4,3) scenario.
description: 20 pages, 5 figures
Backreaction I: The Torus
Creators: name: Evslin, Jarah
name: Varadarajan, Uday
name: Wang, John E.
Publisher: name: arXiv
Year: 2000
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We use wrapped D-brane probes to measure position dependent perturbations of compactification moduli. Due to the backreaction of the D-branes on the local geometry, we suspect that measuring the fluctuations of one modulus to high precision will generically affect the others. These considerations lead us to conjecture a novel uncertainty principle on the Calabi-Yau moduli space. We begin our investigation with a gedanken experiment on a torus.
description: 15 pages, 5 eps figures, clarifying comments added
Additional file 1 of HEE-GER: a systematic review of German economic evaluations of health care published 1990–2004
Creators: name: Schwappach, David LB
name: Boluarte, Till A
Publisher: name: figshare
Year: 2021
Subjects: subject: Linguistics
subject: FOS: Languages and literature

description: Additional File 1: Search strategies used. The table provides the details of search strings, combinations and delimiters of the literature search for each database approached. (PDF 89 KB)
Theory of the radiative width of a highly excited nucleus
Creators: name: Nosov, V. G.
name: Kamchatnov, A. M.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: A microscopic theory of the electromagnetic radiation emitted by a highly excited nucleus is developed on the basis of the Landau theory of a Fermi liquid. Closed formulae are obtained for the mean radiative width and its mean square fluctuation from level to level. The temperatures of many nuclei are found from the observed widths. The relaxation time is estimated from the experimental data on the radiative-width fluctuations. The regions of applicability of the various types of relations between the relaxation time and the lifetime of the compound nucleus, as well as the relevant physical consequences, are discussed.
description: 14 pages
MOESM1 of Biological representation of chemicals using latent target interaction profile
Creators: name: Ayed, Mohamed
name: Lim, Hansaim
name: Xie, Lei
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Table S1. Hyperparameters used for SVR grid search. Table S2. Hyperparameters used for XGB grid search. Table S3. Hyperparameters used for RF grid search. Table S4. Hyperparameters used for RF_EXTR grid search. Table S5. Hyperparameters used for KNR grid search.
"Clocked" Bursts From GS 1826-238
Creators: name: Cocchi, M.
name: Bazzano, A.
name: Natalucci, L.
name: Ubertini, P.
name: Heise, J.
name: Zand, J. J. M. in 't
name: Muller, J. M.
name: Smith, M. J. S.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We report on the long term monitoring of the GINGA transient source GS 1826-238 performed with the BeppoSAX Wide Fiels Camera (WFC) instrument, during four different observing campaigns covering October 1996 - September 1999. WFC detection of type-I bursting activity from the source ruled out its proposed black hole candidacy and clearly suggested the compact object related to GS 1826-238 to be a weakly magnetized neutron star. The analysis of the arrival times of the observed 78 bursts lead to the discovery of a recurrence of ~5.75 hours with a spread of 38 minutes (FWHM) along more than 3 years monitoring data (Ubertini et al., 1999). We performed a more detailed analysis of the whole available data, and evidence of shortening of the recurrence time, together with a drastic narrowing in the spread (down to a few minutes) was observed on a one year time scale. Possible relation with the source X-ray persistent emission is discussed.
description: 5 pages, 3 figures. Proc. of 5th Compton Symp., Portsmouth 1999
Observation of McMillan-Rowell like oscillations in underdoped YBCO junctions oriented along the node of the d-wave order parameter
Creators: name: Shkedy, L.
name: Aronov, P.
name: Koren, G.
name: Polturak, E.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: Dynamic resistance spectra of ramp junctions made of underdoped YBCO electrodes and Ga-doped YBCO barrier are reported. Series of equidistant peaks were observed in these spectra in junctions oriented along the node direction. Junctions with different barrier thickness d_N, showed that the distance between adjacent peaks scales inversely with d_N. The peaks were thus identified as due to McMillan-Rowell like oscillations in the barrier. Analysis of the series of peaks yields an upper limit of about 3.7 meV on the value of the energy gap along the node. We attribute this small gap to the complex s component of the order parameter of underdoped YBCO near the interface of the junctions.
description: 5 figures
Dynamics of multiple atoms in one-dimensional fields
Creators: name: Cascio, Carlo
name: Halimeh, Jad C.
name: McCulloch, Ian P.
name: Recati, Alessio
name: de Vega, Ines
Publisher: name: arXiv
Year: 2018
Subjects: subject: Quantum Physics (quant-ph)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We analyze the dynamics of a set of two-level atoms coupled to the electromagnetic environment within a waveguide. This problem is often tackled by assuming a weak coupling between the atoms and the environment as well as the associated Markov approximation. We show that the accuracy of such an approximation may be more limited than in the single-atom case and also be strongly determined by the presence of collective effects produced by atom-atom interactions. To this aim, we solve the full problem with exact diagonalization and also the time-dependent density matrix renormalization group method, and compare the result to that obtained within a weak-coupling master equation and with the Dicke approximation. Finally, we study the dynamics of the entanglement within the system when considering several inter-atomic distances and atomic frequencies.
Gravity in the Einstein-Gauss-Bonnet Theory with the Randall-Sundrum Background
Creators: name: Kim, Jihn E.
name: Lee, Hyun Min
Publisher: name: arXiv
Year: 2000
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We obtain the full 5D graviton propagator in the Randall-Sundrum model with the Gauss-Bonnet interaction. From the decomposition of the graviton propagator on the brane, we show that localization of gravity arises in the presence of the Gauss-Bonnet term. We also obtain the metric perturbation for observers on the brane with considering the brane bending and compute the amplitude of one massless graviton exchange. For the positive definite amplitude or no ghost states, the sign of the Gauss-Bonnet coefficient should be negative in our convention, which is compatible with string amplitude computations. In that case, the ghost-free condition is sufficient for obtaining the Newtonian gravity. For a vanishing Gauss-Bonnet coefficient, the brane bending allows us to reproduce the correct graviton polarizations for the effective 4D Einstein gravity.
description: Latex file of 28 pages (no figure)
Additional file 1 of Overtreatment in nonmalignant lesions detected in a colorectal cancer screening program: a retrospective cohort study
Creators: name: Cubiella, Joaquín
name: González, Antía
name: Almazán, Raquel
name: Rodríguez-Camacho, Elena
name: Zubizarreta, Raquel
name: Peña-Rey Lorenzo, Isabel
Publisher: name: figshare
Year: 2021
Subjects: Medicine
Biotechnology
Cancer
Science Policy

description: Additional file 1: Supplementary Table 1. Baseline characteristics and colectomy rate according to dependent variables.
Dark Revelations of the $[SU(3)]^3$ and $[SU(3)]^4$ Gauge Extensions of the Standard Model
Creators: name: Kownacki, Corey
name: Ma, Ernest
name: Pollard, Nicholas
name: Popov, Oleg
name: Zakeri, Mohammadreza
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Two theoretically well-motivated gauge extensions of the standard model are $SU(3)_C \times SU(3)_L \times SU(3)_R$ and $SU(3)_q \times SU(3)_L \times SU(3)_l \times SU(3)_R$, where $SU(3)_q$ is the same as $SU(3)_C$ and $SU(3)_l$ is its color leptonic counterpart. Each as three variations, according to how $SU(3)_R$ is broken. It is shown here for the first time that a built-in dark $U(1)_D$ gauge symmetry exists in all six versions, and may be broken to discrete $Z_2$ dark parity. The available dark matter candidates in each case include fermions, scalars, as well as {\it vector gauge bosons}. This work points to the unity of matter with dark matter, the origin of which is not {\it ad hoc}.
description: 12 pages, no figure
MOESM1 of PIRCh-seq: functional classification of non-coding RNAs associated with distinct histone modifications
Creators: name: Fang, Jingwen
name: Ma, Qing
name: Chu, Ci
name: Huang, Beibei
name: Li, Lingjie
name: Cai, Pengfei
name: Batista, Pedro
name: Tolentino, Karen
name: Xu, Jin
name: Li, Rui
name: Du, Pengcheng
name: Qu, Kun
name: Chang, Howard
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Additional file 1: Figure S1. Quality control of histone modification specific PIRCh-seq experiments on distinct cell types. Figure S2. PIRCh-seq enriches ncRNAs associated with chromatin. Figure S3. PIRCh-seq captures low nascent transcription. Figure S4. ncRNAs are more enriched on chromatin than protein coding genes. Figure S5. The chromatin-RNA association of ncRNAs give a hint of cis regulation. Figure S6. Pattern of ncRNA chromatin association is generally conserved in distinct cell types. Figure S7. Allele specific RNA secondary structure and chromatin enrichment of lncRNA Gas5. Figure S8. RNA m6A methylation affects chromatin-RNA association.
The 4He(gamma,n)3He Reaction with Full Final State Interaction
Creators: name: Quaglioni, Sofia
name: Barnea, Nir
name: Efros, Victor D.
name: Leidemann, Winfried
name: Orlandini, Giuseppina
Publisher: name: arXiv
Year: 2003
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: The total cross sections of the processes 4He(gamma,p)3H and 4He(gamma,n)3He are calculated. For these exclusive reactions we investigate the question of the giant dipole peak height, but we also consider higher energies. The calculation includes full Final State Interaction (FSI) via the Lorentz Integral Transform (LIT) approach and employs the semi-realistic MTI-III potential.
description: 3 pages, 2 figures
On the asymptotic behavior of static perfect fluids
Creators: name: Andersson, Lars
name: Burtscher, Annegret Y.
Publisher: name: arXiv
Year: 2018
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Mathematical Physics (math-ph)
subject: Differential Geometry (math.DG)
subject: Dynamical Systems (math.DS)
subject: FOS: Physical sciences
subject: FOS: Mathematics
subject: 83C05, 83C20, 83C30, 83C55, 37N20, 85A15, 53C20, 53C50, 53C80

description: Static spherically symmetric solutions to the Einstein-Euler equations with prescribed central densities are known to exist, be unique and smooth for reasonable equations of state. Some criteria are also available to decide whether solutions have finite extent (stars with a vacuum exterior) or infinite extent. In the latter case, the matter extends globally with the density approaching zero at infinity. The asymptotic behavior largely depends on the equation of state of the fluid and is still poorly understood. While a few such unbounded solutions are known to be asymptotically flat with finite ADM mass, the vast majority are not. We provide a full geometric description of the asymptotic behavior of static spherically symmetric perfect fluid solutions with linear and polytropic-type equations of state with index n>5. In order to capture the asymptotic behavior we introduce a notion of scaled quasi-asymptotic flatness, which encodes a form of asymptotic conicality. In particular, these spacetimes are asymptotically simple.
description: 32 pages; minor changes in v2, final version
Electronic diffusion in a normal state of high-Tc cuprate YBa$_2$Cu$_3$O$_{6+x}$
Creators: name: Kokalj, Jure
Publisher: name: arXiv
Year: 2024
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: The bad metallic phase with resistivity above the Mott-Ioffe-Regel limit, which appears also in cuprate superconductors, was recently understood by cold atom and computer simulations of the Hubbard model via charge susceptibility and charge diffusion constant. However, since reliable simulations can be typically done only at temperatures above the experimental temperatures, the question for cuprate superconductors is still open. This paper addresses this question by resorting to heat transport, which allows for the estimate of electronic diffusion and it further combines it with the resistivity to estimate the charge susceptibility. The doping and temperature dependencies of diffusion constant and charge susceptibilities are shown and discussed for two samples of YBa$_2$Cu$_3$O$_{6+x}$. Results indicate strongly incoherent transport, mean free path corresponding to the Mott-Ioffe-Regel limit for the underdoped sample at temperatures above ~200 K and significant effect of the charge susceptibility on the resistivity.
description: 5+1 pages, 2 figures
Additional file 1 of Involving deprived communities in improving the quality of primary care services: does participatory action research work?
Creators: name: Cawston, Peter G
name: Mercer, Stewart W
name: Barbour, Rosaline S
Publisher: name: figshare
Year: 2021
Subjects: subject: Sociology
subject: FOS: Sociology

description: Authors’ original file for figure 1
Iterative Probability Kinematics
Creators: name: Arlo-Costa, Horacio
name: Richmond H. Thomason
Publisher: name: Carnegie Mellon University
Year: 2001
Subjects: subject: Philosophy
subject: FOS: Philosophy, ethics and religion

description: Following the pioneer work of Bruno De Finetti, conditional probability spaces (allowing for conditioning with events of measure zero) have been studied since (at least) the 1950's.
Liquid stability in a model for ortho-terphenyl
Creators: name: La Nave, E.
name: Mossa, S.
name: Sciortino, F.
name: Tartaglia, P.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: We report an extensive study of the phase diagram of a simple model for ortho-terphenyl, focusing on the limits of stability of the liquid state. Reported data extend previous studies of the same model to both lower and higher densities and to higher temperatures. We estimate the location of the homogeneous liquid-gas nucleation line and of the spinodal locus. Within the potential energy landscape formalism, we calculate the distributions of depth, number, and shape of the potential energy minima and show that the statistical properties of the landscape are consistent with a Gaussian distribution of minima over a wide range of volumes. We report the volume dependence of the parameters entering in the Gaussian distribution (amplitude, average energy, variance). We finally evaluate the locus where the configurational entropy vanishes, the so-called Kauzmann line, and discuss the relative location of the spinodal and Kauzmann loci.
description: RevTeX 4, 8 pages, 8 eps figures
Additional file 1 of A novel emergency department based prevention intervention program for people living with HIV: evaluation of early experiences
Creators: name: Lyons, Michael S
name: Raab, Dana L
name: Lindsell, Christopher J
name: Trott, Alexander T
name: Fichtenbaum, Carl J
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Authors’ original file for figure 1
title: ADCO, Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Cart. 32 (G 136), 745 folios, f. 1069
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Archives départementales de la Côte-d'Or, Cart. 32 (G 136), 745 folios, f. 1069, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Archives départementales de la Côte-d'Or, Cart. 32 (G 136), 745 folios, f. 1069, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
Additional file 2 of Involving deprived communities in improving the quality of primary care services: does participatory action research work?
Creators: name: Cawston, Peter G
name: Mercer, Stewart W
name: Barbour, Rosaline S
Publisher: name: figshare
Year: 2021
Subjects: subject: Sociology
subject: FOS: Sociology

description: Authors’ original file for figure 2
MOESM4 of PIRCh-seq: functional classification of non-coding RNAs associated with distinct histone modifications
Creators: name: Fang, Jingwen
name: Ma, Qing
name: Chu, Ci
name: Huang, Beibei
name: Li, Lingjie
name: Cai, Pengfei
name: Batista, Pedro
name: Tolentino, Karen
name: Xu, Jin
name: Li, Rui
name: Du, Pengcheng
name: Qu, Kun
name: Chang, Howard
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Additional file 4. Review history.
A deep Parkes HI survey of the Sculptor group and filament: HI mass function and environment
Creators: name: Westmeier, T.
name: Obreschkow, D.
name: Calabretta, M.
name: Jurek, R.
name: Koribalski, B. S.
name: Meyer, M.
name: Musaeva, A.
name: Popping, A.
name: Staveley-Smith, L.
name: Wong, O. I.
name: Wright, A.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We present the results of a deep survey of the nearby Sculptor group and the associated Sculptor filament taken with the Parkes 64-m radio telescope in the 21-cm emission line of neutral hydrogen. We detect 31 HI sources in the Sculptor group/filament, eight of which are new HI detections. We derive a slope of the HI mass function along the Sculptor filament of $α= -1.10^{+0.20}_{-0.11}$, which is significantly flatter than the global mass function and consistent with the flat slopes previously found in other low-density group environments. Some physical process, such as star formation, photoionisation or ram-pressure stripping, must therefore be responsible for removing neutral gas predominantly from low-mass galaxies. All of our HI detections have a confirmed or tentative optical counterpart and are likely associated with luminous rather than 'dark' galaxies. Despite a column density sensitivity of about $4 \times 10^{17}~\mathrm{cm}^{-2}$, we do not find any traces of extragalactic gas or tidal streams, suggesting that the Sculptor filament is, at the current time, a relatively quiescent environment that has not seen any recent major interactions or mergers.
description: 20 pages, 11 figures, 4 tables; accepted for publication in MNRAS
Additional file 1 of The presence of ovarian endometrioma adversely affect ovarian reserve and response to stimulation but not oocyte quality or IVF/ICSI outcomes: a retrospective cohort study
Creators: name: Zeng, Cheng
name: Lu, Ruihui
name: Li, Xin
name: Kuai, Yanrong
name: Wang, Sheng
name: Xue, Qing
Publisher: name: figshare
Year: 2022
Subjects: subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Mental Health

description: Supplementary Material 1
Yang-Mills instantons in Kaehler spaces with one holomorphic isometry
Creators: name: Chimento, Samuele
name: Ortin, Tomas
name: Ruiperez, Alejandro
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We consider self-dual Yang-Mills instantons in 4-dimensional Kaehler spaces with one holomorphic isometry and show that they satisfy a generalization of the Bogomol'nyi equation for magnetic monopoles on certain 3-dimensional metrics. We then search for solutions of this equation in 3-dimensional metrics foliated by 2-dimensional spheres, hyperboloids or planes in the case in which the gauge group coincides with the isometry group of the metric (SO(3), SO(1,2) and ISO(2), respectively). Using a generalized hedgehog ansatz the Bogomol'nyi quations reduce to a simple differential equation in the radial variable which admits a universal solution and, in some cases, a particular one, from which one finally recovers instanton solutions in the original Kaehler space. We work out completely a few explicit examples for some Kaehler spaces of interest.
description: Latex2e file, 16 pages, no figures
Identifying Galaxy Cluster Mergers with Deep Neural Networks using Idealized Compton-y and X-ray maps
Creators: name: Arendt, Ashleigh R.
name: Perrott, Yvette C.
name: Contreras-Santos, Ana
name: de Andres, Daniel
name: Cui, Weiguang
name: Rennehan, Douglas
Publisher: name: arXiv
Year: 2024
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We present a novel approach to identify galaxy clusters that are undergoing a merger using a deep learning approach. This paper uses massive galaxy clusters spanning $0 \leq z \leq 2$ from \textsc{The Three Hundred} project, a suite of hydrodynamic re-simulations of 324 large galaxy clusters. Mock, idealised Compton-{\it y} and X-ray maps were constructed for the sample, capturing them out to a radius of $2R_{200}$. The idealised nature of these maps mean they do not consider observational effects such as foreground or background astrophysical objects, any spatial resolution limits or restriction on X-ray energy bands. Half of the maps belong to a merging population as defined by a mass increase $Δ${\it M/M} $\geq$ 0.75, and the other half serve as a control, relaxed population. We employ a convolutional neural network architecture and train the model to classify clusters into one of the groups. A best-performing model was able to correctly distinguish between the two populations with a balanced accuracy (BA) and recall of 0.77, ROC-AUC of 0.85, PR-AUC of 0.55 and $F_{1}$ score of 0.53. Using a multichannel model relative to a single channel model, we obtain a 3\% improvement in BA score, and a 6\% improvement in $F_{1}$ score. We use a saliency interpretation approach to discern the regions most important to each classification decision. By analysing radially binned saliency values we find a preference to utilise regions out to larger distances for mergers with respect to non-mergers, greater than $\sim1.2 R_{200}$ and $\sim0.7 R_{200}$ for SZ and X-ray respectively.
description: 15 pages, 17 figures, published in MNRAS
MOESM1 of DeepShape: estimating isoform-level ribosome abundance and distribution with Ribo-seq data
Creators: name: Cui, Hongfei
name: Hu, Hailin
name: Zeng, Jianyang
name: Chen, Ting
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Plant Biology

description: Additional file 1: Supplementary Methods. Figure S1. Pipeline for generating synthetic data. Figure S2. Distribution of Pearson correlation coefficients (PCC) between predicted ribosome distributions by the shape model in DeepShape and the ground-truth in training, validation and testing datasets. Figure S3. PCC curves for prediction of length-normalized ribosome abundance at each iteration of DeepShape and DeepShape-prime. Figure S4. Application of DeepShape to annotating ribosome stalling events. Figure S5. Four isoforms of the VIM gene. Figure S6. Codon Residence Index (CRI) of different codons in A549 and HBE cell. The data are from the work of Lian et al. (Lian, et al., 2016). Figure S7. Diagrammatic explanation of finding P-sites. Table S1. Performance of shape model on genes with different lengths in E. coli. Table S2. TE and TE fold changes after PP242 treatment in the four cell invasion/metastasis genes. Table S3. mRNA abundance, ribosome abundance and TEs in the four cell invasion/metastasis genes of A549 and H1299 cells.
Additional file 2 of A novel emergency department based prevention intervention program for people living with HIV: evaluation of early experiences
Creators: name: Lyons, Michael S
name: Raab, Dana L
name: Lindsell, Christopher J
name: Trott, Alexander T
name: Fichtenbaum, Carl J
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Authors’ original file for figure 2
Bright X-ray bursts from 1E 1724-3045 in Terzan 2
Creators: name: Cocchi, M.
name: Bazzano, A.
name: Natalucci, L.
name: Ubertini, P.
name: Heise, J.
name: Kuulkers, E.
name: Zand, J. J. M. in 't
Publisher: name: arXiv
Year: 2000
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: During about 3 years wide field monitoring of the Galactic Center region by the WFC telescopes on board the BeppoSAX satellite, a total of 14 type-I X-ray bursts were detected from the burster 1E 1724-3045 located in the globular cluster Terzan 2. All the observed events showed evidence for photospheric radius expansion due to Eddington-limit burst luminosity, thus leading to an estimate of the source distance (~7.2 kpc). Preliminary results of the analysis of the bursts are presented.
description: 5 pages, 2 figures, Proc. 5th Compton Symp., Portsmouth 1999
Inverting the Furstenberg correspondence
Creators: name: Avigad, Jeremy
Publisher: name: Carnegie Mellon University
Year: 2012
Subjects: subject: Philosophy
subject: FOS: Philosophy, ethics and religion

description: Given a sequence of sets An⊆{0,…,n−1}, the Furstenberg correspondence principle provides a shift-invariant measure on2N that encodes combinatorial information about infinitely many of the An's. Here it is shown that this process can be inverted, so that for any such measure, ergodic or not, there are finite sets whose combinatorial properties approximate it arbitarily well. The finite approximations are obtained from the measure by an explicit construction, with an explicit upper bound on how large n has to be to yield a sufficiently good approximation.
 We draw conclusions for computable measure theory, and show, in particular, that given any computable shift-invariant measure on 2N, there is a computable element of 2N that is generic for the measure. We also consider a generalization of the correspondence principle to countable discrete amenable groups, and once again provide an effective inverse.
Additional file 3 of A novel emergency department based prevention intervention program for people living with HIV: evaluation of early experiences
Creators: name: Lyons, Michael S
name: Raab, Dana L
name: Lindsell, Christopher J
name: Trott, Alexander T
name: Fichtenbaum, Carl J
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Authors’ original file for figure 3
Diffusive Transport of Energetic Electrons in the Solar Corona: X-ray and Radio Diagnostics
Creators: name: Musset, S.
name: Kontar, E. P.
name: Vilmer, N.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Imaging spectroscopy in X-rays with RHESSI provide the possibility to investigate the spatial evolution of the X-ray emitting electron distribution and therefore to study the transport effects on energetic electrons during solar flares. We study the energy dependence of the energetic electron scattering mean free path in the solar corona. We use the imaging spectroscopy technique with RHESSI to study the evolution of energetic electrons distribution in different part of the magnetic loop during the 2004 May 21 flare. These observations are compared with the radio observations of the gyrosynchrotron radiation of the same flare by Kuznetsov and Kontar (2015), and with the predictions of the diffusive transport model described by Kontar et al. (2014). The X-ray analysis shows a trapping of energetic electrons in the corona and a spectral hardening of the energetic electron distribution between the top of the loop and the footpoints. Coronal trapping of electrons is stronger for the radio-emitting electrons than for the X-ray-emitting electrons. These observations can be explained by the diffusive transport model derived by Kontar et al. (2014). We show that the combination of X-ray and radio diagnostics is a powerful tool to study electron transport in the solar corona in different energy domains. We show that the diffusive transport model can explain our observations; and in the range 25-500 keV, the electron scattering mean free path decreases with electron energy. We can estimate for the first time the scattering mean free path dependence on energy in the corona.
description: 15 pages, accepted in A&A
Identifying the Background Signal in ARPES of High Temperature Superconductors
Creators: name: Kaminski, A.
name: Rosenkranz, S.
name: Fretwell, H. M.
name: Mesot, J.
name: Randeria, M.
name: Campuzano, J. C.
name: Norman, M. R.
name: Li, Z. Z.
name: Raffy, H.
name: Sato, T.
name: Takahashi, T.
name: Kadowaki, K.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: One of the interesting features of the photoemission spectra of the high temperature cuprate superconductors is the presence of a large signal (referred to as the "background'') in the unoccupied region of the Brillouin zone. Here we present data indicating that the origin of this signal is extrinsic and is most likely due to strong scattering of the photoelectrons. We also present an analytical method that can be used to subtract the background signal.
Additional file 1 of Zinc oxide nanoparticle regulates the ferroptosis, proliferation, invasion and steaminess of cervical cancer by miR-506-3p/CD164 signaling
Creators: name: Lei, Jie-Yun
name: Li, Shuang-Xue
name: Li, Feng
name: Li, Hui
name: Lei, Yuan-Sheng
Publisher: name: figshare
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Computational Biology

description: Additional file 1: Figure S1 Characterization of ZON. A, B ZON was synthesized and the actual size and surface charge were observed by TEM and zeta potential analyzer. Figure S2 Effect of ZON on HcerEpic cells. A HcerEpic cells were treated with ZON. The cell growth was analyzed by colony formation assays. Ns no significant. Figure S3 ZON inhibits cell growth of cervical cancer in vivo by targeting CD164. A–D Tumor growth of Hela cell was analyzed by xenograft mouse model in vivo (n=5). The tumor images (A), tumor weight (B), Ki-67 levels (C), and CD164 expression (D) were shown. The experiments were repeated 3 times, **P < 0.01.
Chiral plasma instability and primordial Gravitational wave
Creators: name: Anand, Sampurn
name: Bhatt, Jitesh R.
name: Pandey, Arun Kumar
Publisher: name: arXiv
Year: 2018
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: It is known that cosmic magnetic field, if present, can generate anisotropic stress in the plasma and hence, can act as a source of gravitational waves. These cosmic magnetic fields can be generated at very high temperature, much above electroweak scale, due to the gravitational anomaly in presence of the chiral asymmetry. The chiral asymmetry leads to instability in the plasma which ultimately leads to the generation of magnetic fields. In this article, we discuss the generation of gravitational waves, during the period of instability, in the chiral plasma sourced by the magnetic field created due to the gravitational anomaly. We have shown that such gravitational wave will have a unique spectrum. Moreover, depending on the temperature of the universe at the time of its generation, such gravitational waves can have a wide range of frequencies. We also estimate the amplitude and frequency of the gravitational waves and delineate the possibility of its detection by future experiments like eLISA.
description: 8 pages, 2 figures