cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
High-Fidelity Entanglement and Detection of Alkaline-Earth Rydberg Atoms
Creators: name: Madjarov, Ivaylo S.
name: Covey, Jacob P.
name: Shaw, Adam L.
name: Choi, Joonhee
name: Kale, Anant
name: Cooper, Alexandre
name: Pichler, Hannes
name: Schkolnik, Vladimir
name: Williams, Jason R.
name: Endres, Manuel
Publisher: name: arXiv
Year: 2020
Subjects: subject: Atomic Physics (physics.atom-ph)
subject: Quantum Gases (cond-mat.quant-gas)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Trapped neutral atoms have become a prominent platform for quantum science, where entanglement fidelity records have been set using highly-excited Rydberg states. However, controlled two-qubit entanglement generation has so far been limited to alkali species, leaving the exploitation of more complex electronic structures as an open frontier that could lead to improved fidelities and fundamentally different applications such as quantum-enhanced optical clocks. Here we demonstrate a novel approach utilizing the two-valence electron structure of individual alkaline-earth Rydberg atoms. We find fidelities for Rydberg state detection, single-atom Rabi operations, and two-atom entanglement surpassing previously published values. Our results pave the way for novel applications, including programmable quantum metrology and hybrid atom-ion systems, and set the stage for alkaline-earth based quantum computing architectures.
description: ISM and JPC contributed equally to this work
Evidence that Emission and Absorption Outflows in Quasars Are Related
Creators: name: Xu, Xinfeng
name: Zakamska, Nadia
name: Arav, Nahum
name: Miller, Timothy
name: Benn, Chris
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We analyze VLT/X-shooter data for 7 quasars, where we study the relationships between their broad absorption line (BAL) and emission line outflows. We find: 1) the luminosity of the [OIII] $λ$5007 emission profile decreases with increasing electron number density (n$_e$) derived from the BAL outflow in the same quasar, 2) the measured velocity widths from the [OIII] emission features and CIV absorption troughs in the same object are similar, and 3) the mean radial velocity derived from the BAL outflow is moderately larger than the one from the [OIII] emission outflow. These findings can be explained by the physical interpretation that the [OIII] and BAL outflow are different manifestations of the same wind. When we have outflows with smaller distances to the central source, their n$_e$ is higher. Therefore, the [OIII] emission is collisionally de-excited and the [OIII] luminosity is then suppressed. Comparisons to previous studies show that the objects in our sample exhibit broad [OIII] emission features similar to the ones in extremely red quasars (ERQs). This might imply that BAL quasars and ERQs have the same geometry of outflows or are at a similar evolutionary stage. We found that the physical parameters derived from the BAL outflows can explain the amount of observed [OIII] luminosity, which strengthens our claim of both BAL and [OIII] outflows are from the same wind. These estimates can be tested with upcoming James Webb Space Telescope observations.
description: 16 pages, 9 figures
MOESM1 of Association of circulating microRNAs with prevalent and incident knee osteoarthritis in women: the OFELY study
Creators: name: Jean-Charles Rousseau
name: Millet, Marjorie
name: Croset, Martine
name: Sornay-Rendu, Elisabeth
name: Borel, Olivier
name: Chapurlat, Roland
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Additional file 1: Data S1. Protocol details for NGS analysis, RNA isolation and RT-qPCR analysis.
Pediatric acute lymphoblastic leukemia patients exhibit distinctive alterations in the gut microbiota
Creators: name: Zhu, Xiaofan
Publisher: name: CNGB
Year: 2020
Subjects: Other
microarray
Multiisolate

description: Fecal samples of 58 patients with acute lymphoblastic leukemia (ALL) and 23 healthy controls were collected and examined by 16S rRNA quantitative arrays (microarray hybridization) and bioinformatics analysis. And these data are currently under control.
Additional file 4 of Knockdown of heat shock protein family D member 1 (HSPD1) promotes proliferation and migration of ovarian cancer cells via disrupting the stability of mitochondrial 3-oxoacyl-ACP synthase (OXSM)
Creators: name: Duan, Yaoyun
name: Yu, Juan
name: Chen, Miaojuan
name: Lu, Qinsheng
name: Ning, Fen
name: Gan, Xiaowen
name: Liu, Hanbo
name: Ye, Yixin
name: Lu, Shenjiao
name: Lash, Gendie E.
Publisher: name: figshare
Year: 2023
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Supplementary Material 4
Interstellar Scintillation Monitoring of the RadioAstron Blazars
Creators: name: Liu, Jun
name: Krichbaum, Thomas P.
name: Bignall, Hayley
name: Liu, Xiang
name: Kraus, Alex
name: Kovalev, Yuri Y.
name: Sokolovsky, Kirill V.
name: Cimò, Giuseppe
name: Zensus, J. Anton
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: The RadioAstron space radio telescope provides a unique opportunity to study the extreme brightness temperatures ($\mathrm{T_B }$) in AGNs with unprecedented long baselines of up to 28 Earth diameters. Since interstellar scintillation (ISS) may affect the visibilities observed with space VLBI (sVLBI), a complementary ground based flux density monitoring of the RadioAstron targets, which is performed near in time to the VLBI observation, could be beneficial. The combination/comparison with the sVLBI data can help to unravel the relative influence of source intrinsic and ISS induced effects, which in the end may alter the conclusions on the $\mathrm{T_B }$ measurements from sVLBI. Since 2013, a dedicated monitoring program has been ongoing to observe the ISS of RadioAstron AGN targets with a number of radio telescopes. Here we briefly introduce the program and present results from the statistical analysis of the Effelsberg monitoring data. We discuss the possible effects of ISS on $\mathrm{T_B }$ measurements for the RadioAstron target B0529+483 as a case study.
description: Proceedings for the 14th European VLBI Network Symposium & Users Meeting (EVN 2018) 8-11 October 2018, Granada, Spain
Additional file 3 of Knockdown of heat shock protein family D member 1 (HSPD1) promotes proliferation and migration of ovarian cancer cells via disrupting the stability of mitochondrial 3-oxoacyl-ACP synthase (OXSM)
Creators: name: Duan, Yaoyun
name: Yu, Juan
name: Chen, Miaojuan
name: Lu, Qinsheng
name: Ning, Fen
name: Gan, Xiaowen
name: Liu, Hanbo
name: Ye, Yixin
name: Lu, Shenjiao
name: Lash, Gendie E.
Publisher: name: figshare
Year: 2023
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Supplementary Material 3
Variation and heterogeneity in human mesenchymal stem/stromal cells cultured in vitro
Creators: name: Chen, Chao
Publisher: name: CNGB
Year: 2020
Subjects: Transcriptome or Gene expression
Multiisolate

description: Mesenchymal Stem/Stromal cells (MSCs) are multipotent cells with promising application potential in regenerative medicine and immune regulation. However, MSCs cultured in vitro exhibit functional variation and heterogeneity, which potentially leads to inconsistent clinical outcomes. The underlying molecular mechanisms that define MSC heterogeneity remain largely unknown, hindering method development for functional potency assessment. Here, we investigated into gene-expression heterogeneity of human primary Wharton’s Jelly-derived MSCs (WJMSCs) cultured in vitro via single-cell RNA-seq.
From deterministic dynamics to kinetic phenomena
Creators: name: Denisov, S.
name: Filippov, A.
name: Klafter, J.
name: Urbakh, M.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We investigate a one-dimenisonal Hamiltonian system that describes a system of particles interacting through short-range repulsive potentials. Depending on the particle mean energy, $ε$, the system demonstrates a spectrum of kinetic regimes, characterized by their transport properties ranging from ballistic motion to localized oscillations through anomalous diffusion regimes. We etsablish relationships between the observed kinetic regimes and the "thermodynamic" states of the system. The nature of heat conduction in the proposed model is discussed.
description: 4 pages, 4 figures
Magnetism and superconductivity in $M_{c}$Ta$_{2}$S$_{2}$C (M = Fe, Co, Ni, and Cu)
Creators: name: Suzuki, Masatsugu
name: Suzuki, Itsuko S.
name: Walter, Jürgen
Publisher: name: arXiv
Year: 2004
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: Magnetic properties of $M_{c}$Ta$_{2}$S$_{2}$C ($M$ = Fe, Co, Ni, Cu) have been studied using SQUID DC and AC magnetic susceptibility. In these systems magnetic $M^{2+}$ ions are intercalated into van der Waals gaps between adjacent S layers of host superconductor Ta$_{2}$S$_{2}$C. Fe$_{0.33}$Ta$_{2}$S$_{2}$C is a quasi 2D $XY$-like antiferromagnet on the triangular lattice. It undergoes an antiferromagnetic phase transition at $T_{N}$ (= 117 K). The irreversible effect of magnetization occurs below $T_{N}$, reflecting the frustrated nature of the system. The AF phase coexists with two superconducting phases with the transition temperatures $T_{cu} = 8.8$ K and $T_{cl} = 4.6$ K. Co$_{0.33}$Ta$_{2}$S$_{2}$C is a quasi 2D Ising-like antiferromagnet on the triangular lattice. The antiferromagnetic phase below $T_{N} = 18.6$ K coexists with a superconducting phase below $T_{cu} = 9.1$ K. Both Ni$_{0.25}$Ta$_{2}$S$_{2}$C and Cu$_{0.60}$Ta$_{2}$S$_{2}$C are superconductors with $T_{cu}$ ($= 8.7$ K for Ni and 6.4 K for Cu) and $T_{cl}$ (= 4.6 K common to $M_{c}$Ta$_{2}$S$_{2}$C). Very small effective magnetic moments suggest that Ni$^{2+}$ and Cu$^{2+}$ spins are partially delocalized.
description: 15 pages, 17 figures, and 3 tables
Cryo-EM analysis of the effect of seeding with brain-derived Aβ amyloid fibrils
Creators: name: Pfeiffer, Peter Benedikt
name: Ugrina, Marijana
name: Schwierz, Nadine
name: Sigurdson, Christina J.
name: Schmidt, Matthias
name: Fändrich, Marcus
Publisher: name: Universität Ulm
Year: 2024
Subjects: subject: Aggregation
subject: Amyloid beta
subject: Cryo-electron microscopy
subject: Prion
subject: Protein misfolding
subject: DDC 570 / Life sciences

description: Aβ amyloid fibrils from Alzheimer’s brain tissue are polymorphic and structurally different from typical in vitro formed Aβ fibrils. Here, we show that brain-derived (ex vivo) fibril structures can be proliferated by seeding in vitro. The proliferation reaction is only efficient for one of the three abundant ex vivo Aβ fibril morphologies, which consists of two peptide stacks, while the inefficiently proliferated fibril morphologies contain four or six peptide stacks. In addition to the seeded fibril structures, we find that de novo nucleated fibril structures can emerge in seeded samples if the seeding reaction is continued over multiple generations. These data imply a competition between de novo nucleation and seed extension and suggest further that seeding favours the outgrowth of fibril morphologies that contain fewer peptide stacks.
Additional file 3 of Obesity and dyslipidemia are associated with partially reversible modifications to DNA hydroxymethylation of apoptosis- and senescence-related genes in swine adipose-derived mesenchymal stem/stromal cells
Creators: name: Glasstetter, Logan M.
name: Oderinde, Tomiwa S.
name: Mirchandani, Mohit
name: Rajagopalan, Kamalnath Sankaran
name: Barsom, Samer H.
name: Thaler, Roman
name: Siddiqi, Sarosh
name: Zhu, Xiang-Yang
name: Tang, Hui
name: Jordan, Kyra L.
name: Saadiq, Ishran M.
name: van Wijnen, Andre J.
name: Eirin, Alfonso
name: Lerman, Lilach O.
Publisher: name: figshare
Year: 2023
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3: Figure S2. Protein expression of differentially hydroxymethylated candidate genes with functions related to apoptosis, senescence, or cell proliferation. A Protein levels were evaluated by Western blotting in swine Lean- and Obese-MSCs, n = 6 each; B quantification revealed decreased levels of the apoptosis-related genes CHOP/DDIT3 and CASP14 in Obese-MSCs compared with Lean-MSCs. The rightmost lane is excluded from quantification of the Western blot for CASP14, due to an obstructive artifact. Displayed Western blot images have been cropped, and group annotations are shown by white or gray horizontal bars above the images. Full-length blots/gels are presented in Figure S3. *p-value ≤ 0.05 vs. Lean-MSCs.
Functions of bounded mean oscillation and quasisymmetric mappings on spaces of homogeneous type
Creators: name: Nguyen, Trang T. T.
name: Ward, Lesley A.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Classical Analysis and ODEs (math.CA)
subject: FOS: Mathematics
subject: 42B35 (Primary) 30L10, 42B25, 30C65, 46B22, 28C15, 28A20 (Secondary)

description: We establish a connection between the function space BMO and the theory of quasisymmetric mappings on \emph{spaces of homogeneous type} $\widetilde{X} :=(X,ρ,μ)$. The connection is that the logarithm of the generalised Jacobian of an $η$-quasisymmetric mapping $f: \widetilde{X} \rightarrow \widetilde{X}$ is always in $\rm{BMO}(\widetilde{X})$. In the course of proving this result, we first show that on $\widetilde{X}$, the logarithm of a reverse-Hölder weight $w$ is in $\rm{BMO}(\widetilde{X})$, and that the above-mentioned connection holds on metric measure spaces $\widehat{X} :=(X,d,μ)$. Furthermore, we construct a large class of spaces $(X,ρ,μ)$ to which our results apply. Among the key ingredients of the proofs are suitable generalisations to $(X,ρ,μ)$ from the Euclidean or metric measure space settings of the Calderón--Zygmund decomposition, the Vitali Covering Theorem, the Radon--Nikodym Theorem, a lemma which controls the distortion of sets under an $η$-quasisymmetric mapping, and a result of Heinonen and Koskela which shows that the volume derivative of an $η$-quasisymmetric mapping is a reverse-Hölder weight.
MOESM1 of Is the soil seed bank a reliable source for passive restoration of bush-cleared semi-arid rangelands of South Africa?
Creators: name: Mthunzi Mndela
name: Madakadze, Casper
name: Nherera-Chokuda, Florence
name: Sikhalazo Dube
Publisher: name: figshare
Year: 2020
Subjects: subject: Molecular Biology
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology

description: Additional file 1: Fig. S1. A diagram showing the layout of the experiment and the distribution of plots at Maseding and Kgomokgomo rangelands. The small white shaded squares are 1.7-m2 quadrats used for herbaceous vegetation assessment. Table S1. Species abundance (%) of the AGV during pre-treatment (PTT) in 2016 and in cleared and uncleared microsites in 2017 at Maseding. Table S2. Species abundance (%) of the AGV during pre-treatment (PTT) in 2016 and in cleared and uncleared microsites in 2017 at Kgomokgomo
State Stabilization for Gate-Model Quantum Computers
Creators: name: Gyongyosi, Laszlo
name: Imre, Sandor
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: Information Theory (cs.IT)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: Gate-model quantum computers can allow quantum computations in near-term implementations. The stabilization of an optimal quantum state of a quantum computer is a challenge, since it requires stable quantum evolutions via a precise calibration of the unitaries. Here, we propose a method for the stabilization of an optimal quantum state of a quantum computer through an arbitrary number of running sequences. The optimal state of the quantum computer is set to maximize an objective function of an arbitrary problem fed into the quantum computer. We also propose a procedure to classify the stabilized quantum states of the quantum computer into stability classes. The results are convenient for gate-model quantum computations and near-term quantum computers.
description: 23 pages, Quant. Inf. Proc. (2019)
陆生脊椎动物细胞系建立、存储和应用-河马皮肤成纤维细胞系建立和鉴定
Creators: name: 王, 桃
Publisher: name: CNGB
Year: 2020
Subjects: Genome sequencing
Targeted loci cultured
Monoisolate

description: 本项目通过原代培养和连续传代的方式，建立一株河马皮肤组织来源的成纤维细胞系，并通过形态学观察、免疫染色、线粒体COI基因测序、细菌/真菌和支原体检测、生长曲线和流式分析等技术，对该株细胞系进行特征鉴定。
Bohmian particle trajectories in relativistic fermionic quantum field theory
Creators: name: Nikolic, H.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Quantum Physics (quant-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The de Broglie-Bohm interpretation of quantum mechanics and quantum field theory is generalized in such a way that it describes trajectories of relativistic fermionic particles and antiparticles and provides a causal description of the processes of their creation and destruction. A general method of causal interpretation of quantum systems is developed and applied to a causal interpretation of fermionic quantum field theory represented by c-number valued wave functionals.
description: 12 pages, revised, to appear in Found. Phys. Lett
WUE/NUE in greenhouse-grown tomato plants (Solanum lycopersicum L.) under phosphorus deprivation, water stress or combined stress
Creators: name: Macchio, M
Publisher: name: Zenodo
Year: 2018
Subjects: WUE
NUE
greenhouse
tomato
Solanum lycopersicum
phosphorus deprivation
water stress

description: WUE/NUE in greenhouse-grown tomato plants (Solanum lycopersicum L.) under phosphorus deprivation, water stress or combined stress
IN CHILDREN WITH SPASTIC TETROPARESIS, KYOSIAN DESCRIPTION OF ANTHROPOMETRIC CAUSATIVES OF THE I-II PERIOD OF CHILDHOOD AND METHODS OF INSTRUMENTAL EXAMINATION
Creators: name: Sultanova, Lola
name: Jumaev, Farrukh
Publisher: name: Zenodo
Year: 2024

description: This article provides information on the material and methods of studying anthropometric indicators, examination methods and treatment methods in children of the first and second childhood suffering from spastic tetroparesis.
Transcriptional variations among human mesenchymal stromal cells cultured in vitro
Creators: name: Chen, Chao
Publisher: name: CNGB
Year: 2020
Subjects: Transcriptome or Gene expression
Multiisolate

description: Promises of mesenchymal stem/stromal cells (MSCs)-based therapies are being widely investigated in various inflammatory disorders, such as Crohn’s disease and graft-versus-host disease. However, MSCs cultured in vitro exhibit functional variability, might lead to distinct MSC engraftment and therapeutic efficiencies. The underlying mechanism of functional variability of MSCs is still unclear. Here, we comprehensively investigated transcriptional variations and their influence on immunosuppressive potency among MSC samples derived from different tissues.
In vitro study of root architecture of different lines of tomato (Solanum lycopersicum L.) seedlings under conditions of high osmotic stress as a proxy for drought
Creators: name: Savaldi-Goldstein, S
name: Cardinale, F
name: Constán-Aguilar, A C
name: Gomez-Roldan, M V
name: Bendahmane, A
Publisher: name: Zenodo
Year: 2020
Subjects: In vitro
root architecture
tomato
Solanum lycopersicum
osmotic stress
drought

description: In vitro study of root architecture of different lines of tomato (Solanum lycopersicum L.) seedlings under conditions of high osmotic stress as a proxy for drought
Motion of a test body in the presence of an external scalar field which respects the weak equivalence principle
Creators: name: Mbelek, J. P.
Publisher: name: arXiv
Year: 2004
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: It is shown that the main contribution to the rotational curve of a spiral galaxy may be due essentially to the interaction, in the general relativistic spacetime, of the galactic matter with a very light long range scalar field which respects the weak equivalence principle. The comparison of the theoretical results with 23 spiral galaxy rotation curves shows a good agreement between our proposal and observations.
description: 13 pages, proceedings of the international conference "Conceptions of space in physics", 29 September - 3 October 1997, Les Houches (France), edited by Z. A. Golda, M. Heller and M. Lachieze-Rey
Higher-Order topological insulator in a dodecagonal quasicrystal
Creators: name: Hua, Chun-Bo
name: Chen, Rui
name: Zhou, Bin
name: Xu, Dong-Hui
Publisher: name: arXiv
Year: 2020
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Higher-order topological insulators (HOTIs) are a newly discovered class of topological insulators which exhibit unconventional bulk-boundary correspondence. Very recently, the concept of HOTIs has been extended to aperiodic quasicrystalline systems, where the topological band theory fails to describe topological phases. More importantly, a novel HOTI phase protected by an eightfold rotational symmetry, not found in crystalline materials, was identified in the Ammann-Beenker tiling quasicrystals. Here we report the discovery of a quasicrystalline HOTI in a dodecagonal quasicrystal. The quasicrystalline HOTI supports twelve in-gap zero-energy modes symmetrically distributed at the corners of the quasicrystal dodecagon. These zero-energy corner modes are protected by a combination of a twelvefold rotational symmetry and mirror symmetry, as well as particle-hole symmetry, which has no crystalline counterpart.
description: published version, accepted as a Rapid Communication in Phys. Rev. B
MOESM1 of Reconstruction and analysis of a carbon-core metabolic network for Dunaliella salina
Creators: name: Fachet, Melanie
name: Witte, Carina
name: Flassig, Robert
name: Rihko-Struckmann, Liisa
name: McKie-Krisberg, Zaid
name: JÃ¼rgen Polle
name: Sundmacher, Kai
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Marine Biology
subject: Inorganic Chemistry
subject: Computational Biology

description: Additional file 1 List of reactions, metabolites and biomass composition.
The effects of blood storage conditions on the transcript profile of plasma cell-free RNA
Creators: name: sun, jinghua
Publisher: name: CNGB
Year: 2021
Subjects: Raw sequence reads
Transcriptome or Gene expression
Multiisolate
Medical

description: Plasma cell-free RNA (cfRNA) are potential biomarkers for disease prediction and diagnosis. However, pre-analysis factors, such as the delay in blood processing and storage may lead to unreliable results, though no study has systematically evaluated the effect of blood storage conditions on the whole transcriptome of plasma cfRNA yet. We collected peripheral blood samples from four healthy subjects and allowed them to stand at room temperature (RT) or 4℃ for different time periods (0h, 2h, 6h and 24h) prior to plasma separation. Then, plasma cfRNA stability was evaluated by measuring expression changes of cell-free mRNA, lncRNA and miRNA using high throughput sequencing-based profiling. Finally, their paired leukocyte RNA data were integrated to depict the effect of leukocytes on plasma cfRNA during storage.
Kinetic barriers in RNA unzipping
Creators: name: Imparato, Alberto
name: Peliti, Luca
Publisher: name: arXiv
Year: 2004
Subjects: subject: Biomolecules (q-bio.BM)
subject: Soft Condensed Matter (cond-mat.soft)
subject: Biological Physics (physics.bio-ph)
subject: FOS: Biological sciences
subject: FOS: Physical sciences

description: We consider a simple model for the unfolding of RNA tertiary structure under dynamic loading. The opening of such a structure is regarded as a two step process, each corresponding to the overcoming of a single energy barrier. The resulting two-barrier energy landscape accounts for the dependence of the unfolding kinetics on the pulling rate. Furthermore at intermediate force, the two barriers cannot be distinguished by the analysis of the opening kinetic, which turns out to be dominated by a single macro-barrier, whose properties depend non-trivially on the two single barriers. Our results suggest that in pulling experiments on RNA molecule containing tertiary structures, the details of the single kinetic barriers can only be obtained using a low pulling rate value, or in the high force regime.
description: to appear on Eur. Phys. J. B
ChromInst:24小时完成PGT-A的单细胞测序技术
Creators: name: 张鹏(Zhangpeng)
Publisher: name: CNGB
Year: 2021
Subjects: Raw sequence reads
Genome sequencing
Monoisolate
Other
分子生物学

description: 基于ChromInst技术在一夜之间完成PGT-A检测的单细胞测序技术
MOESM2 of How do world and European standard populations impact burden of disease studies? A case study of disability-adjusted life yearsÂ (DALYs) in Scotland
Creators: name: Wyper, Grant
name: Grant, Ian
name: Fletcher, Eilidh
name: McCartney, Gerry
name: Fischbacher, Colin
name: Stockton, Diane
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 2. Summary of GBD 2017 results from GBD country profile for the United Kingdom.
Nonminimal spin-field interaction of the classical electron and quantization of spin
Creators: name: Deriglazov, Alexei A.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Quantum Physics (quant-ph)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: I shortly describe semi-classical models of spinning electron and list a number of theoretical issues where these models turn out to be useful, see arXiv:1710.07135 for details. Then I discuss the possibility to extend the range of applicability of these models by introducing an interaction, that forces the spin to align up or down relative to its precession axis.
description: Talk for International Workshop "Supersymmetries and Quantum Symmetries" (SQS'2019, 26 August - August 31, 2019). Misprints corrected
The Impact of Crop Insurance on the Economic Performance of Hungarian Cropping Farms
Creators: name: Sporri, Martina
name: Baráth, Lajos
name: Bokusheva, Raushan
name: Ferto, Imre
name: Sporri, Martina
name: Baráth, Lajos
name: Bokusheva, Raushan
name: Ferto, Imre
Publisher: name: Unknown
Year: 2012
Subjects: subject: Risk and Uncertainty
subject: Hungary
subject: Crop Insurance
subject: 2SCML
subject: Impact evaluation

description: Crop insurance products can improve and stabilize economic performance. However, due to insurance market imperfections, the use of insurance products often requires governmental support. This paper analyses the actual impact of insurance products on the economic performance of cropping farms by linking the economic performance model with the insurance demand model. For this analysis, a simultaneous equation system is solved. Our estimations show a negative impact of insurance on the economic performance indicators farm profit, labour productivity and land productivity. The analysis of the insurance demand side confirms financial limitations of many farms.
Exploration of precise individualized therapy for triple negative breast cancer
Creators: name: 黄, 欣
Publisher: name: CNGB
Year: 2020
Subjects: Genome sequencing
Variation
Multiisolate
Medical

description: The project is applying NGS with a panel of 508 cancer-associated genes both in specimens and paired blood samples of triple negative breast cancer including exsome sequencing data, MSI data and TMB data. In combinatin of survival data of the patients, this study aims to compare the differences and explore potential prognostic predictors and therapeutic targets.
Alloblackburneus guadalajarae Dellacasa & Dellacasa & Gordon 2011, newspecies
Creators: name: Dellacasa, Marco
name: Dellacasa, Giovanni
name: Gordon, Robert D.
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Aphodiidae
Alloblackburneus
Alloblackburneus guadalajarae

description: Alloblackburneus guadalajarae newspecies
(Fig. 31-35)
 Typelocality. Guadalajara, Jalisco, Mexico.
 Type repository. United State National Museum. Washington.
 Description. Length 4.5-5.0 mm; oval elongate, convex, moderately shiny, glabrous. Reddish testaceous; legs somewhat darker; antennalclub yellow. Head with epistome slightly convex on disc, dually coarsely somewhat irregularly not closely punctured; clypeus feebly sinuate at middle, round at sides, thinly bordered, edge glabrous, moderately reflexed; genae obtusely round, sparsely ciliate, not protruding from the eyes; latter rather large; frontal suture distinctly impressed, not tuberculate; front dually, rather sparsely punctured. Pronotum weakly transverse, strongly convex, dually punctured; large punctures, seven to eight times larger than small ones, denser on sides, sparser and nearly lacking medially; small very fine punctures evenly, not closely scattered throughout; lateral margins feeblyarcuate, thickly bordered, edge glabrous; hind angles obtusely round; base feebly bisinuate, thinly bordered. Scutellum narrowly elongate, slightly convex, sparsely punctured in basal half. Elytra feebly broadened posteriorly, deeply striate; striae rather superficially punctured, subcrenulate; interstriae strongly convex, near imperceptibly sparsely punctured. Hind tibiae superior apical spur shorter than first tarsal segment; latter shorter than following three segments combined. Male: pronotum somewhat more transverse and less convex; metasternal plate distinctly excavate; aedeagus Fig. 34-35. Female: pronotum somewhat more narrowed frontwardly and more convex; metasternal plate almost flat.
 Type material. MEXICO, Aguascalientes: Aguascalientes, 9.VIII.1955, leg. F. S. Islas (1 male, allotype, USNM); Jalisco: Guadalajara, 30.VII.1963, leg. P. J. Spangler (1 female, holotype, USNM); Nayarit: Acaponeta (1 male and 2 females, paratypes, DCGI).
 Distribution. Mexico (Aguascalientes, Jalisco, Nayarit).
 Etymology. Named after the type locality.
 Bionomics. Almost unknown. Two specimens of the type series were collected in Summer.
description: Published as part of Dellacasa, Marco, Dellacasa, Giovanni & Gordon, Robert D., 2011, Systematic revision of the American taxa belonging to the genera Alloblackburneus Bordat, 2009, and Blackburneus Schmidt, 1913, with description of seven new species (Coleoptera: Scarabaeidae: Aphodiinae), pp. 1-52 in Insecta Mundi 2011 (204) on pages 9-10, DOI: 10.5281/zenodo.10090539
The continued spectral evolution of the neutron star RX J0720.4-3125
Creators: name: Vink, Jacco
name: de Vries, Cor
name: Mendez, Mariano
name: Verbunt, Frank
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We observed the isolated neutron star RX J720.4-3125 with Chandra's Low Energy Transmission Grating Spectrometer, following the XMM-Newton discovery of long term spectral evolution of this source. The new observation shows that the spectrum of RX J720.4-3125 has continued to change in the course of 5 months. It has remained hard, similar to the last XMM-Newton observation, but the strong depression observed with XMM-Newton at long wavelengths has disappeared. Contrary to the XMM-Newton observations, the new Chandra observation shows that the flux increase at short wavelengths and the decrease at long wavelengths do not necessarily occur simultaneously.
description: To be published in the Astrophysical Journal Letters. Contains 4 pages with 3 figures, including 1 color figure
Data-Driven Control of Buildings and Energy Hubs
Creators: name: Schwarz, Julian
Publisher: name: ETH Zurich
Year: 2020
Subjects: info:eu-repo/classification/ddc/621.3
Electric engineering

description: Building energy management has gained an increasing interest in research since there is a substantial potential for energy savings. With an energy consumption of around 40% globally efficient building control algorithms can create a big impact on our future society. Previous studies have successfully shown how  model based predictive control can optimize the energy management. But the performance of these methods rely on accurate dynamical models. Such models are expensive to design. Especially, if these models also contain the interconnection with communal energy hubs. Therefore, the goal of this project is to investigate the potential of the data-enabled predictive control algorithm for buildings and energy hubs. Opposed to the model based approach this method represents the system behaviour purely from collected input and output measurements. We implement the controller in a simulation environment and we compare its performance with other control methods. We show that the performance of the DeePC algorithm is comparable to a data-driven MPC controller. With the main difference in the scalabilty of the computational complexity. The MPC approach shows better scaling properties. We investigate the potential of energy cost reduction by a comparison with industrial relevant controllers, namely BangBang and PID control. In particular, compared to BangBang control the savings turn out to be significant (10%). But these result have to be taken with caution due to the limited scope of this project.
BCS and Attractive Hubbard Model Comparative Study
Creators: name: Salwen, Nathan
name: Sheets, Steven A.
name: Cotanch, Stephen R.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We extend previous studies of the BCS canonical approach for the attractive Hubbard model. A derivation of the BCS formulation is presented for both the Hubbard and a simpler reduced Hamiltonian. Using direct diagonalization, exact one and two dimensional solutions for both Hamiltonians are compared to BCS variational calculations. Approximate and exact ground state energies and energy gaps are computed for different electron number systems as well as correlation observables not previously predicted. Reproducing published one dimensional findings, the BCS is an excellent approximation for the Hubbard ground state energy but not energy gap, a finding that remains true in two dimensions. Propagators and correlators are found more sensitive to wavefunctions and appreciable differences are computed with the Hubbard model exhibiting a weaker degree of superconductivity than the BCS. However for the reduced Hamiltonian model the BCS is an excellent approximation for all observables in both one and two dimensions.
description: Latex, 11 pages 19 figures
MOESM5 of Protocol for the Process Evaluation of the Online Remote Behavioural Intervention for Tics (ORBIT) randomized controlled trial for children and young people
Creators: name: K. Khan
name: C. Hollis
name: C. Hall
name: E. Davies
name: D. Mataix-Cols
name: P. Andrén
name: T. Murphy
name: B. Brown
name: E. Murray
name: C. Glazebrook
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Cancer

description: Additional file 5. Good Reporting of a Mixed Methods Study (GRAMMS) checklist.
Properties of four numerical schemes applied to a scalar nonlinear scalar wave equation with a GR-type nonlinearity
Creators: name: Hansen, Jakob
name: Khokhlov, Alexei
name: Novikov, Igor
Publisher: name: arXiv
Year: 2004
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We study stability, dispersion and dissipation properties of four numerical schemes (Iterative Crank-Nicolson, 3'rd and 4'th order Runge-Kutta and Courant-Fredrichs-Levy Non-linear). By use of a Von Neumann analysis we study the schemes applied to a scalar linear wave equation as well as a scalar non-linear wave equation with a type of non-linearity present in GR-equations. Numerical testing is done to verify analytic results. We find that the method of lines (MOL) schemes are the most dispersive and dissipative schemes. The Courant-Fredrichs-Levy Non-linear (CFLN) scheme is most accurate and least dispersive and dissipative, but the absence of dissipation at Nyquist frequency, if fact, puts it at a disadvantage in numerical simulation. Overall, the 4'th order Runge-Kutta scheme, which has the least amount of dissipation among the MOL schemes, seems to be the most suitable compromise between the overall accuracy and damping at short wavelengths.
description: 9 pages, 8 Postscript figures
The Determinants of Rural Household Food Security in the Punjab, Pakistan: An Econometric Analysis
Creators: name: Bashir, Muhammad Khalid
name: Schilizzi, Steven
name: Pandit, Ram
name: Bashir, Muhammad Khalid
name: Schilizzi, Steven
name: Pandit, Ram
Publisher: name: Unknown
Year: 2012
Subjects: subject: Agricultural and Food Policy
subject: Community/Rural/Urban Development
subject: Consumer/Household Economics
subject: Food Consumption/Nutrition/Food Safety
subject: Food Security and Poverty
subject: Food security
subject: rural households
subject: logistic regression
subject: Punjab
subject: Pakistan

description: Pakistan is one of the leading producers of important agricultural commodities in the world with a relatively high proportion of undernourished population (26 %). This study aims to examine the food security trends in Pakistan in general, and to find out the household level food security and its key determinants in the rural areas of the Punjab Province in particular. Both secondary and primary data were used. Secondary data were obtained from Food and Agriculture Organization (FAO), World Bank and Government of Pakistan’s data sources. Primary data were collected from 1152 households in 12 districts of the Punjab province using questionnaire survey. The analysis was done in two phases i.e. (Phase-A) identification of food security trends, at national level and (Phase-B) household food security and its determinants. For Phase-A, graphical representations are produced and for Phase-B primary data were analyzed in two further stages. In stage one the food security status of households was calculated using the calorie intake method. The second stage focused on identifying the socio-economic factors affecting food security using the logistic regression. The secondary data revealed that Pakistan is a food sufficient as well as food secure country at the national level. But at the household level 23 percent of the sample households were measured to be food insecure. Econometric analysis revealed that monthly income, livestock assets, joint family system and education levels (middle, intermediate and graduation) were positively impacting the rural household food security. On the other hand, greater household heads’ age and family size had negative impacts on household food security. It is suggested that income generating opportunities needs to be created along with improvements in secondary and technical education systems, and family planning programs to alleviate food insecurity in the study region.
Advanced Biofuels: Future Perspectives from an Expert Elicitation Survey
Creators: name: Fiorese, Giulia
name: Catenacci, Michela
name: Verdolini, Elena
name: Bosetti, Valentina
name: Fiorese, Giulia
name: Catenacci, Michela
name: Verdolini, Elena
name: Bosetti, Valentina
Publisher: name: Unknown
Year: 2012
Subjects: subject: Environmental Economics and Policy
subject: Expert Elicitation
subject: Research
subject: Development and Demonstration
subject: Biofuels

description: This paper illustrates the main results of an expert elicitation survey on advanced (second and third generation) biofuel technologies. The survey focuses on eliciting probabilistic information on the future costs of advanced biofuels and on the potential role of RD&D (Research, Development and Demonstration) efforts in reducing these costs and in supporting the deployment of biofuels in OECD and non-OECD countries. Fifteen leading experts from different EU member states provide insights on the future potential of advanced biofuel technologies both in terms of costs and diffusion. This information results in a number of policy recommendations with respect to public RD&D strategies and is an important contribution to the integrated assessment modelling community.
The Study of Deubiquitinase USP25 in the Pathogenesis of Down's Syndrome-Alzheimer's Disease
Creators: name: Wang, Xin
Publisher: name: CNGB
Year: 2020
Subjects: Transcriptome or Gene expression
Multiisolate
Model organism

description: This project includes three experiments: (1) RNA-Seq of mus musculus_10 m male 5xFAD_Usp25KO hippocampus; (2) RNA-Seq of mus musculus_5 m male 5xFAD_Dp16 hippocampus; (3) RNA-Seq of mus musculus_9 m male 5xFAD_AZ1 hippocampus. The details of these three experiments were described as followings: (1) RNA-Seq of mus musculus_10 m male 5xFAD_Usp25KO hippocampus: Transcriptomic analysis of 10-month-old WT, Usp25+/-, 5xFAD, and 5xFAD;Usp25+/- male mice. Purified total RNA from hippocampal tissues were used to RNA-seq preparation. cDNA library construction and sequencing were performed by Beijing Genomics Institute using a Illumina HiSeq 4000 sequencer. Two file were incorporated into the file named "other" in the dataset, including "1-5xFAD_Usp25KO RNA-Seq Read Counts.xls" and "1-5xFAD_Usp25KO RNA-Seq FPKM.xls". In the Excel datasheet, WT=WT, Usp25KO=Usp25+/-, AD=5xFAD, AD_Usp25KO=5xFAD;Usp25+/-. The sample accession number is from CNS0279890 to CNS0279913. (2) RNA-Seq of mus musculus_5 m male 5xFAD_Dp16 hippocampus: Transcriptomic analysis of 5-month-old WT, Dp16, 5xFAD, and 5xFAD;Dp16 male mice. Purified total RNA from hippocampal tissues were used to RNA-seq preparation. cDNA library construction and sequencing were performed by Novogene Co., Ltd using a Illumina NovaSeq 6000 sequencer. Two file were incorporated into the file named "other" in the dataset, including "2-5xFAD_Dp16 RNA-Seq Read Counts.xls" and "2-5xFAD_Dp16 RNA-Seq FPKM.xls". In the Excel datasheet, WT=WT, DS=Dp16, AD=5xFAD, DS_AD=5xFAD;Dp16. The sample accession number is from CNS0279914 to CNS0279937. (3) RNA-Seq of mus musculus_9 m male 5xFAD_AZ1 hippocampus: Seven-month-old mice were intraperitoneally injected with vehicle (5% DMSO+95% corn oil) or AZ1 (20 mg/kg/day) for 4 weeks, included WT + vehicle, 5xFAD + vehicle, and 5xFAD + AZ1 groups. After 3-week behavioral test, all of the mice were intraperitoneally injected with vehicle or AZ1 (20 mg/kg/day) for another 1 week, and then collected the hippocampal tissues for RNA extraction using TRIzol reagent. cDNA library construction and sequencing were performed by Novogene Co., Ltd using a Illumina NovaSeq 6000 sequencer. In addition to the raw data suffixed with .fq.gz and .bam, two other files were also incorporated into the file named "other" in the dataset, including "3-5xFAD_AZ1 RNA-Seq Read Counts.xls" and "3-5xFAD_AZ1 RNA-Seq FPKM.xls". In the Excel datasheet, WT=WT+Vehicle, AD=5xFAD+Vehicle, AD_AZ1=5xFAD+AZ1. The sample accession number is from CNS0279938 to CNS0279961.
Massive scalar counterpart of gravitational waves in scalarized neutron star binaries
Creators: name: Wang, Jing
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In analogy with spontaneous magnetization of ferromagnets below the Curie temperature, a neutron star (NS), with a compactness above a certain critical value, may undergo spontaneous scalarization and exhibit an interior nontrivial scalar configuration. Consequently, the exterior space-time is changed, and an external scalar field appears, which subsequently triggers a scalarization of its companion. The dynamical interplay produces a gravitational scalar counterpart of tensor gravitational waves. In this paper, we resort to scalar-tensor theory and demonstrate that the gravitational scalar counterpart from double neutron star (DNS) and neutron star-white dwarf (NS-WD) become massive. We report that (i) a gravitational scalar background field, arising from convergence of external scalar fields, plays the role of gravitational scalar counterpart in scalarized DNS binary, and the appearance of a mass-dimensional constant in Higgs-like gravitational scalar potential is responsible for a massive gravitational scalar counterpart with mass of order of Planck scale; (ii) a dipolar gravitational scalar radiated field, resulting from different binding energy of NS and WD, plays the role of gravitational scalar counterpart in scalarized orbital shrinking NS-WDs, which oscillates around a local and scalar-energy-density dependent minimum of the gravitational scalar potential and gains a mass of the order of about $10^{-21} ev/c^2$.
description: 7 pages, no figures
多组学结直肠癌早筛技术开发和组学大数据分析平台建立项目
Creators: name: 曾, 柳红
Publisher: name: CNGB
Year: 2020
Subjects: Proteome
Multiisolate
Medical

description: 结直肠癌（CRC）是目前常见的世界范围内发病率及死亡率居高不下的恶性肿瘤之一。目前对结直肠癌筛查、早期发现、早期诊断主要根据具体国家发病状况和结直肠癌特点提出了相应的检查方法，但仍然缺乏高效的无创检测手段。血液和粪便是结直肠癌无创诊断的理想样本。本研究揭示结直肠癌患者、腺瘤患者、健康人群在蛋白表达、表观遗传以及微生物菌群等维度的差异分子，寻找潜在的早期筛查和预后监测的分子标记物，并开发相应可应用于临床的检测技术。
Additional file 11 of Obesity and dyslipidemia are associated with partially reversible modifications to DNA hydroxymethylation of apoptosis- and senescence-related genes in swine adipose-derived mesenchymal stem/stromal cells
Creators: name: Glasstetter, Logan M.
name: Oderinde, Tomiwa S.
name: Mirchandani, Mohit
name: Rajagopalan, Kamalnath Sankaran
name: Barsom, Samer H.
name: Thaler, Roman
name: Siddiqi, Sarosh
name: Zhu, Xiang-Yang
name: Tang, Hui
name: Jordan, Kyra L.
name: Saadiq, Ishran M.
name: van Wijnen, Andre J.
name: Eirin, Alfonso
name: Lerman, Lilach O.
Publisher: name: figshare
Year: 2023
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 11: Figure S10. Obesity-driven dysregulation of 5hmC levels on genes related to apoptotic process and cellular senescence in human MSCs. Volcano plots showing differential 5hmC levels in human Obese- versus Lean-MSCs for genes filtered by A the GO term for apoptotic process or B the union of the GO term and REACTOME Superpath for cellular senescence. For a given gene, differential 5hmC levels entail p ≤ 0.05 and fold change ≥ 1.4 or ≤ 0.7. Genes with high or low 5hmC levels in Obese-MSCs versus Lean-MSCs are represented with red or blue markers, respectively. Genes with very high fold change in 5hmC levels of Obese- versus Lean-MSCs are presented as outliers with triangle markers.