cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Streblote castanea
Creators: name: Prozorov, Alexey M.
name: Prozorova, Tatiana A.
name: Spitsyn, Vitaly M.
name: Spitsyna, Elizaveta A.
name: Volkova, Julia S.
name: Yakovlev, Roman V.
name: Meier, Jürg
name: Saldaitis, Aidas
name: Revay, Edita E.
name: Müller, Günter C.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lasiocampidae
Streblote
Streblote castanea

description: Streblote castanea (Swinhoe, 1892)
(Figs 1–7, 25, 32, 38–40)
Ticera castanea Swinhoe, 1892, Catalogue of eastern and Australian Lepidoptera Heterocera in the collection of the Oxford University Museum, 1, 269. Type locality: “ Philippine Islands.” Holotype male (OUMNH).
Taxonomic note. 1. The origin of the holotype is unknown, which makes further taxonomic studies impossible. A 130 years old holotype male from OUMNH (Fig. 1) has to be barcoded using a modern sequencing approach (e.g., Prosser et al., 2015) and then compared with specimens from other Philippine islands. So far, five specimens from Luzon, Mindoro, and Negros have been barcoded (p -distance ranges between 2.45 and 3.92%, Figs 38–40) but the species was recorded also from Panay, Cebu, Samar, and Palawan (Zolotuhin et al., 1997), additionally, we know few specimens from Mindanao (NBCL, NSMT, MWM/ZSM). A detailed study of the external variability of males and females mentioned by Zolotuhin et al. (1997) is also necessary.
2. The species resembles very much S. dorsalis from Borneo, a genetic study is necessary to check their relationship due to the lack of significant morphologic differences.
description: Published as part of Prozorov, Alexey M., Prozorova, Tatiana A., Spitsyn, Vitaly M., Spitsyna, Elizaveta A., Volkova, Julia S., Yakovlev, Roman V., Meier, Jürg, Saldaitis, Aidas, Revay, Edita E. & Müller, Günter C., 2022, Notes on Streblote (Lepidoptera, Lasiocampidae, Lasiocampinae) from the Malay Archipelago with two new species description, pp. 14-28 in Ecologica Montenegrina 58 on page 17, DOI: 10.37828/em.2022.58.2, http://zenodo.org/record/8029468
Parasarocladium Summerb., J.A.Scott, Guarro & Crous 2018
Creators: name: Calabon, Mark S.
name: Jones, E. B. Gareth
name: Pang, Ka-Lai
name: Abdel-Wahab, Mohamed A.
name: Jin, Jing
name: Devadatha, Bandarupalli
name: Sadaba, Resurreccion B.
name: Apurillo, Carlo Chris
name: Hyde, Kevin D.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Fungi
Ascomycota
Sordariomycetes
Hypocreales
Sarocladiaceae
Parasarocladium

description: 2.4.2 Parasarocladium
Summerbell et al. (2018) introduced the genus Parasarocladium to accommodate three Acremonium species: P. breve, P. gamsii and P. radiatum that formed a distinct clade based on 18 S, ITS, 28 S rDNA and actin genes. Currently, Parasarocladium comprises nine species listed in the Index Fungorum (April 2023) and MycoBank databases. The nine species were isolated from soil (five species), one species from decaying leaves and three as endophytes from marine algae. Crous et al. (2018a) erected the family Sarocladiaceae based on multigene phylogenies to accommodate the genera: Parasarocladium and Sarocladium and described Parasarocladium debruynii from a soil sample in the Netherlands. Gonçalves et al. (2019) described three new marine Parasarocladium species P. aestuarinum, P. alavariense and P. fusiforme as endophytes of macroalgae (Enteromorpha, Fucus, Ulva and unidentified Rhodophyta), sea water and sponges that were collected from Ria de Aveiro estuary, Portugal based on ITS and β- tubulin (tub2) and actin (act1) genes. Crous et al. (2020) recorded for the first time the sexual stage of the new species Parasarocladium tasmanniae that was recorded from leaves of Tasmannia insipida collected from Limpinwood Nature Reserve, New South Wales, Australia. The new species was described based on morphology and ITS, LSU, actA, TEF- 1α and tub2 genes. Crous et al. (2021) described Parasarocladium wereldwijsianum from a soil sample collected from Utrecht Province, the Netherlands. Parasarocladium wereldwijsianum differs from the phylogenetically related species P. aestuarinum and P. alavariense by having olivaceous buff colonies, irregularly branched conidiophores, and hyaline, smooth-walled, ellipsoidal to obovoid, with truncate base.
The three species were described as endophytes of the marine algae (Fucus, Ulva), sea water and sponges. Parasarocladium aestuarinum is phylogenetically closely related to P. alavariense, however, both species differ in conidial morphology and dimensions with 0.013 p-distance of nucleotide sites among the ITS and β- tubulin genes. Parasarocladium fusiforme formed a basal clade to the other eight species of Parasarocladium (Crous et al. 2021; Gonçalves et al. 2020).
description: Published as part of Calabon, Mark S., Jones, E. B. Gareth, Pang, Ka-Lai, Abdel-Wahab, Mohamed A., Jin, Jing, Devadatha, Bandarupalli, Sadaba, Resurreccion B., Apurillo, Carlo Chris & Hyde, Kevin D., 2023, Updates on the classification and numbers of marine fungi, pp. 213-238 in Botanica Marina (Warsaw, Poland) (Warsaw, Poland) 66 (4) on page 220, DOI: 10.1515/bot-2023-0032, http://zenodo.org/record/11000251
Streblote dorsalis
Creators: name: Prozorov, Alexey M.
name: Prozorova, Tatiana A.
name: Spitsyn, Vitaly M.
name: Spitsyna, Elizaveta A.
name: Volkova, Julia S.
name: Yakovlev, Roman V.
name: Meier, Jürg
name: Saldaitis, Aidas
name: Revay, Edita E.
name: Müller, Günter C.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lasiocampidae
Streblote
Streblote dorsalis

description: Streblote dorsalis (Walker, 1866)
(Figs 8–10, 26, 38–40)
Megasoma dorsalis Walker, 1866, List of the specimens of lepidopterous insects in the collection of the British Museum, 35, 1947. Type locality: Borneo. Holotype female (NHML), not male as stated by Walker.
= Streblote helpsi Holloway, 1987, Moths of Borneo, 3, 25. Type locality: [Borneo] Brunei, Sungai Selanjak. Holotype male (NHML).
Taxonomic note. 1. The “male” mentioned in the original description is an error. Walker described a female which is evident from the coloration, the size of the body, and the wings of the specimen.
2. The taxon is known to us from 4 adults originating from Borneo: holotype female (Fig. 8), holotype male of S. helpsi (Fig. 9), and a pair from SNHM (male on Fig. 10). Here we suppose that specimens from Belitung (a pair from SMNH, Figs 11–12, and one female from NBCL) and Sulawesi (two females from NBCL, Fig. 13; earlier mentioned by Zolotuhin & Holloway, 2006) may represent two new species externally resembling and genetically close to S. dorsalis. Barcoding and detailed morphologic study are necessary.
3. The species resembles very much S. castanea from the Philippines, a genetic study is necessary to check their relationship due to the lack of significant morphologic differences.
description: Published as part of Prozorov, Alexey M., Prozorova, Tatiana A., Spitsyn, Vitaly M., Spitsyna, Elizaveta A., Volkova, Julia S., Yakovlev, Roman V., Meier, Jürg, Saldaitis, Aidas, Revay, Edita E. & Müller, Günter C., 2022, Notes on Streblote (Lepidoptera, Lasiocampidae, Lasiocampinae) from the Malay Archipelago with two new species description, pp. 14-28 in Ecologica Montenegrina 58 on pages 17-19, DOI: 10.37828/em.2022.58.2, http://zenodo.org/record/8029468
Mathematical modeling in cellular immunology: T cell activation and parameter estimation
Creators: name: Dushek, Omer
Publisher: name: University of British Columbia
Year: 2008

description: A critical step in mounting an immune response is antigen recognition by T cells. This step proceeds by productive interactions between T cell receptors (TCR) on the surface of T cells and foreign antigen, in the form of peptide-major-histocompatibility-complexes (pMHC), on the surface of antigen-presenting-cells (APC). Antigen recognition is exceedingly difficult to understand because the vast majority of pMHC on APCs are derived from self-proteins. Nevertheless, T cells have been shown to be exquisitely sensitive, responding to as few as 10 antigenic pMHC in an ocean of tens of thousands of self pMHC. In addition, T cells are extremely specific and respond only to a small subset of pMHC by virtue of their specific TCR. To explain the sensitivity of T cells to pMHC it has been proposed that a single pMHC may serially bind multiple TCRs. Integrating present knowledge on the spatial-temporal dynamics of TCR/pMHC in the T cell-APC contact interface, we have constructed mathematical models to investigate the degree of TCR serial engagements by pMHC. In addition to reactions within clusters, the models capture the formation and mobility of TCR clusters. We find that a single pMHC serially binds a substantial number of TCRs in a TCR cluster only if the TCR/pMHC bond is stabilized by coreceptors and/or pMHC dimerization. In a separate study we propose that serial engagements can explain T cell specificity. Using Monte Carlo simulations, we show that the stochastic nature of TCR/pMHC interactions means that multiple binding events are needed for accurate detection of foreign pMHC. Critical to our studies are estimates of TCR/pMHC reaction rates and mobilities. In the second half of the thesis, we show that Fluorescence Recovery After Photobleaching (FRAP) experiments can reveal effective diffusion coefficients. We then show, using asymptotic analysis and model fitting, that FRAP experiments can be used to estimate reaction rates between cell surface proteins, like TCR/pMHC. Lastly, we use FRAP experiments to investigate how the actin cytoskeleton modulates TCR mobility and report effective reaction rates between TCR and the cytoskeleton.
Measurement invariance with regard to gender in organizational citizenship behaviors
Creators: name: Bergeron, Diane M.
name: Wolff, Hans-Georg
name: Cooper, Melissa
Publisher: name: OSF Registries
Year: 2024
Subjects: subject: Business
subject: Organizational Behavior and Theory
subject: Social and Behavioral Sciences
subject: Psychology
subject: FOS: Psychology
subject: OCB Gender

description: Gender differences in OCB have long been of interest and have been investigated in studies using meta-analyses (Ng Lam, & Feldman, 2016), experiments (e.g., Heilman & Chen, 2005), and field studies. In their recent review, Allen and Jang (2018) suggest examining measurement invariance. This method, however, requires a large sample size (i.e., > 1000 respondents). We are unaware of any OCB dataset of this size and therefore we intend to create one from published studies. To that end, we are seeking published studies that used the Williams and Anderson (1991) measure because it has been, and is still, regularly used in scholarly research. We will use recently-developed methods for multilevel analysis of measurement invariance to examine measurement invariance with regard to gender.
Impact of third order shim coils on gradient-magnet interactions and gradient waveform fidelity
Creators: name: Boulant, Nicolas
name: Le Ster, Caroline
name: Amadon, Alexis
name: Aubert, Guy
name: Beckett, Alexander
name: Belorgey, Jean
name: Bonnelye, Cédric
name: Bosch, Dario
name: Brunner, David Otto
name: Dilasser, Guillaume
name: Dubois, Olivier
name: Ehses, Philipp
name: Feinberg, David
name: Feizollah, Sajjad
name: Gras, Vincent
name: Gross, Simon
name: Guihard, Quentin
name: Lannou, Hervé
name: Le Bihan, Denis
name: Mauconduit, Franck
name: Molinié, Frédéric
name: Nunio, François
name: Pruessmann, Klaas
name: Quettier, Lionel
name: Scheffler, Klaus
name: Stöcker, Tony
name: Tardif, Christine
name: Ugurbil, Kamil
name: Vignaud, Alexandre
name: Vu, An
name: Wu, Xiaoping
Publisher: name: Zenodo
Year: 2024

description: Synopsis

Motivation: Third order shim coils can impact gradient-magnet interactions with consequences on image quality and magnet safety.

Goals: To demonstrate the influence of third order shim coils on the SC72 gradient coil using field and vibration measurements.

Approach: The gradient transfer function was measured at 11.7T (Iseult) and at 7T (Terra) with and without connection of the 3rd order shim coils. Vibration measurements were carried out on Iseult from 0 to 11.7T in the two configurations as well.

Results: The data demonstrate a drastic influence of the 3rd order shim coils and their circuits.  

 

Impact: The work suggests caution when using third order shim coils at 7T and above. It also paves the way for further investigations to improve gradient waveform fidelity.
title: Lateral interactions between adsorbed molecules: Investigations of CO on Ru(001) using nonlinear surface vibrational spectroscopies
Creators: name: Cho, Minhaeng
name: Hess, Christian
name: Bonn, Mischa
Publisher: name: American Physical Society
Year: 2024

description: We present an experimental and theoretical investigation into the coupling of C-O stretch vibrations of CO molecules adsorbed on Ru(001). We employ surface infrared-visible (IR-VIS) (IV) and infrared-infrared-visible (IR-IR-VIS) (IIV) sum-frequency generation (SFG) (IV-SFG and IIV-SFG, respectively) to investigate the effects of the intermolecular coupling through the nonlinear optical response of the system. As a consequence of the increased intermolecular interaction with increasing coverage due to the closer proximity of CO molecules on the surface, we observe pronounced frequency shifts of the vibrational resonances. In addition, the intensity behavior in both the IV-SFG and IIV-SFG spectra exhibits a strong nonlinear dependence on the coverage. These observations can be reproduced by extending previous theories for the coverage-dependent linear optical response (used to explain IR reflectance absorption data) to the nonlinear optical response. Expressions are derived for the second- and third-order nonlinear susceptibilities in terms of molecular properties such as the polarizability, hyperpolarizability, and second hyperpolarizability. We obtain very good quantitative agreement between theory and experiment. The analysis indicates that the principal effect of the intermolecular coupling on the nonlinear optical response is through a local-field correction for the linear IR field.
OLIY TA'LIM MUASSASALARIDA MA'NAVIY-MA'RIFIY ISHLARNI BOSHQARISH SAMARADORLIGINI BAHOLASH MEXANIZMINI TAKOMILLASHTIRISH
Creators: name: Bektemirov, Nodir
Publisher: name: Zenodo
Year: 2024

description: Maqolada oliy ta’lim muassasalarida ma’naviy-ma’rifiy ishlarni boshqarish va shu sohada faoliyat olib borayotgan rahbar xodimlar faoliyati samaradorligini yanada oshirish bo‘yicha tajribalar tahlil qilingan. Shuningdek maqolada, tа’lim muаssаsаlаridа mа’nаviy-mа’rifiy ishlаrni tаshkillаshtirish, bоshqаrish vа аniq mаqsаdlаrgа yо‘nаltirish usullаri, sаmаrаdоrlik meхаnizmlаri hamda mа’nаviy-mа’rifiy ishlаrning tа’lim-tаrbiyа sаmаrаdоrligini tа’minlаshdаgi о‘rni ilmiy tаhlil qilingan.
Additional file 1: of Informal Health Provider and Practical Approach to Lung Health interventions to improve the detection of chronic airways disease and tuberculosis at primary care level in Malawi: study protocol for a randomised controlled trial
Creators: name: Hastings Banda
name: Mortimer, Kevin
name: Bello, George
name: Mbera, Grace
name: Namakhoma, Ireen
name: Thomson, Rachael
name: Moffat Nyirenda
name: Faragher, Brian
name: Madan, Jason
name: Malmborg, Rasmus
name: Stenberg, Berthe
name: Mpunga, James
name: Mwagomba, Beatrice
name: Gama, Elvis
name: Piddock, Katherine
name: Squire, Stephen
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics

description: Baseline sampling steps and summary of estimates. (DOCX 18 kb)
Alternatives to carbon dioxide euthanasia for laboratory rats
Creators: name: Makowska, Inez Joanna
Publisher: name: University of British Columbia
Year: 2008

description: The most commonly used method of euthanasia of laboratory rodents is exposure to carbon dioxide (CO₂), but recent studies have shown that rodents find this gas aversive. The aim of my thesis was to evaluate rat aversion to inhalant agents that could be used as humane alternatives to CO₂. The first study used approach-avoidance testing to examine rat responses to argon-induced hypoxia when argon was introduced at flow rates of 40-239% of the test cage volume per min. Rats never remained in the test cage long enough to lose consciousness when tested with argon. They consumed fewer reward items, stopped eating sooner, and left the test cage more quickly than when tested with air. Rats stopped eating and left the test cage when the oxygen (O₂) concentration had dropped to about 7.7 and 6.8%, respectively, but these O₂ concentrations are too high to cause unconsciousness. Although humans exposed to hypoxia report only subtle symptoms that include cognitive impairments and light headedness, rats are burrowing rodents and could therefore be more sensitive to these effects. I conclude that argon is not a humane alternative to CO₂. The second study used approach-avoidance testing to evaluate rat responses to different concentrations of the inhalant anaesthetics halothane and isoflurane introduced with vaporizers or from soaked cotton balls. On the first day of exposure to anaesthetics, most rats remained in the test cage until they were ataxic and showing difficulty returning to the home cage. On subsequent days of testing most rats left the test cage within seconds, but if given the option, all promptly returned and stayed until they were ataxic, indicating that the learned aversion is transient. Rats were likely sedated by the time they chose to leave, suggesting that forced exposure from the onset of aversion until loss of consciousness is less of a welfare concern than forced exposure to non-sedating agents. I suggest that the use of inhalant anaesthetics for inducing unconsciousness prior to euthanasia is a more humane method than the commonly used CO₂.
Additional file 3: of Informal Health Provider and Practical Approach to Lung Health interventions to improve the detection of chronic airways disease and tuberculosis at primary care level in Malawi: study protocol for a randomised controlled trial
Creators: name: Hastings Banda
name: Mortimer, Kevin
name: Bello, George
name: Mbera, Grace
name: Namakhoma, Ireen
name: Thomson, Rachael
name: Moffat Nyirenda
name: Faragher, Brian
name: Madan, Jason
name: Malmborg, Rasmus
name: Stenberg, Berthe
name: Mpunga, James
name: Mwagomba, Beatrice
name: Gama, Elvis
name: Piddock, Katherine
name: Squire, Stephen
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy

description: Trial registration details. (DOCX 21 kb)
Childhood Socioeconomic Position Relates To Adult Decision-Making: Evidence From A Large Cross-Cultural Investigation
Creators: name: Wang, Simon
name: Hanson, Jamie L
Publisher: name: OSF Registries
Year: 2024
Subjects: subject: Developmental Psychology
subject: Behavioral Economics
subject: Economics
subject: Social and Behavioral Sciences
subject: Psychology
subject: FOS: Psychology

description: Early exposure to poverty may have profound and enduring impacts on developmental trajectories over the lifespan. This study investigated potential links between childhood socioeconomic position, recent economic change, and temporal discounting in a large international cohort (N=12,951 adults from 61 countries). Temporal discounting refers to the tendency to prefer smaller immediate rewards over larger rewards delivered after a delay, and connects to consequential outcomes including academic achievement, occupational success, and risk-taking behaviors. Consistent with multiple theories about the impacts of stress exposure, individuals who reported lower socioeconomic positions in childhood exhibited greater temporal discounting in adulthood compared to peers who did not. Furthermore, an interaction emerged between childhood socioeconomic position and recent economic change, such that as expected the steepest temporal discounting was found among those from lower childhood socioeconomic positions and recently experienced negative economic change as a result of the COVID pandemic. These associations remained significant even when accounting for potentially confounding factors like education level and current employment. Findings provide new evidence that childhood socioeconomic position relates to greater temporal discounting and steeper devaluation of future rewards later in adulthood, particularly in response to contemporaneous economic change . This suggests childhood socioeconomic position may have longer-term impacts on developmental trajectories. Speculatively, childhood socioeconomic position may shape adult behavior through increased life stress, diminished access to resources, and lower perceived trust and reliability in social systems. These findings underscore the long-term implications of socioeconomic gaps, cycles of disadvantage and economic marginalization.
An agent-based forest sector modeling approach to analyzing the economic effects of natural disturbances
Creators: name: Schwab, Olaf Sebastian
Publisher: name: University of British Columbia
Year: 2008

description: This dissertation describes the development of CAMBIUM, an agent-based forest sector model for large-scale strategic analysis. This model is designed as a decision support tool for assessing the effect that changes in forest product demand and resource inventories can have on the structure and economic viability of the forest sector. CAMBIUM complements existing forest sector models by modeling aggregate product supply as an emergent property of individual companies’ production decisions and stand-level ecological processes. Modeling the forest products sector as a group of interacting autonomous agents makes it possible to introduce production capacity dynamics and the potential for mill insolvencies as factors in modeling the effects of market and forest inventory based disturbances. This thesis contains four main manuscripts. In the first manuscript I develop and test a dispersal algorithm that projects aggregated forest inventory information onto a lattice grid. This method can be used to generate ecologically and statistically consistent datasets where high-quality spatial inventory data is otherwise unavailable. The second manuscript utilizes this dataset in developing a provincial-level resource dynamics model for assessing the timber supply effects of introducing weevil-resistant spruce. This model employs a stand-level approach to simulating weevil infestation and associated merchantable volume losses. Provincial-level impacts are determined by simulating harvest activities over a 350 year time horizon. In the third manuscript I shift the focus to interactions between forest companies. I analyze the effects of strategic decisions on sector structure by developing CAMBIUM as an agent-based model of competition and industry structure evolution. The forest sector is modeled as a group of autonomous, interacting agents that evolve and compete within the limitations posed by resource inventories and product demand. In the final manuscript I calibrate CAMBIUM to current conditions in the British Columbia forest sector. Industry agents compete for roundwood inputs, as well as for profits in finished product markets for pulp, panel products, and lumber. To test the relevance and utility of this model, CAMBIUM is used to quantify the cumulative impacts of a market downturn for forest products and mountain pine beetle induced timber supply fluctuations on the structure of the forest sector.
Cluzobra aitkeni Lane 1956
Creators: name: Kurina, Olavi
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Mycetophilidae
Cluzobra
Cluzobra aitkeni

description: Cluzobra aitkeni Lane, 1956
Widespread in the Neotropics: Trinidad, Brazil, French Guyana and Peru. The species is common also in light trap samples (cf. Matile 1996).
Material examined: 3 ɗɗ, leg. V. Soon 25.XI. – 01.XII. 2002 (Malaise trap); 1 ɗ, same except 9. – 15. XII. 2002; 1 ɗ, same except 23. XII. – 29. XII. 2002; 1 ɗ, same except 30. XII. 2002 – 0 5. I. 2003; 4 ɗɗ, leg. A. Selin & T. Armulik 14. I. 2005 (light trap); 1 ɗ, leg. K. Sarv 12.II – 03.III. 2007 (Malaise trap); 25 ɗɗ, same except 0 3. – 27.III. 2007. Total: 36 ɗɗ.
description: Published as part of Kurina, Olavi, 2008, Cluzobra matilei sp. n. from French Guyana, with notes on congeners (Diptera: Mycetophilidae), pp. 63-68 in Zootaxa 1874 on page 64, DOI: 10.5281/zenodo.274482
Cluzobra butleri Lane 1959
Creators: name: Kurina, Olavi
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Mycetophilidae
Cluzobra
Cluzobra butleri

description: Cluzobra butleri Lane, 1959
Widespread in the Neotropics: Brazil, French Guyana and Peru (Matile 1996). The only known Cluzobra species without microtrichia and wing-patterns.
Material examined: 1 ɗ, leg. V. Soon 9. – 15. XII. 2002 (Malaise trap); 1 ɗ, leg. K. Sarv 5. – 15.VI. 2006 (Malaise trap); 1 ɗ, same except 14. – 30.VII. 2006; 1 ɗ, same except 2.–20.I. 2007; 4 ɗɗ, same except 0 3. – 27.III. 2007. Total: 8 ɗɗ.
description: Published as part of Kurina, Olavi, 2008, Cluzobra matilei sp. n. from French Guyana, with notes on congeners (Diptera: Mycetophilidae), pp. 63-68 in Zootaxa 1874 on page 64, DOI: 10.5281/zenodo.274482
Cluzobra variegata Matile 1996
Creators: name: Kurina, Olavi
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Mycetophilidae
Cluzobra
Cluzobra variegata

description: Cluzobra variegata Matile, 1996
Figs 3, 10, 11.
Endemic in French Guyana: The Nouragues Nature Reserve (cf. Matile 1996) and Kaw Nature Reserve. Close to C. vicina and C. matilei, see under C. matilei for discussion.
Material examined: 1 ɗ, leg. K. Sarv 31. VIII – 17. IX. 2006 (Malaise trap).
description: Published as part of Kurina, Olavi, 2008, Cluzobra matilei sp. n. from French Guyana, with notes on congeners (Diptera: Mycetophilidae), pp. 63-68 in Zootaxa 1874 on page 64, DOI: 10.5281/zenodo.274482
Cluzobra vicina Matile 1996
Creators: name: Kurina, Olavi
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Mycetophilidae
Cluzobra
Cluzobra vicina

description: Cluzobra vicina Matile, 1996
Figs 1, 8, 9.
Endemic in French Guyana: The Nouragues Nature Reserve (cf. Matile 1996) and Kaw Nature Reserve. Close to C. variegata and C. matilei, see under C. matilei for discussion.
Material examined: 1 ɗ, leg. K. Sarv 11.XII.2006 – 2.I.2007 (Malaise trap); 1 ɗ, same except 20.I. – 24. II. 2007; 9 ɗɗ, same except 12.II – 03.III. 2007; 18 ɗɗ, same except 0 3. – 27.III. 2007. Total: 29 ɗɗ.
description: Published as part of Kurina, Olavi, 2008, Cluzobra matilei sp. n. from French Guyana, with notes on congeners (Diptera: Mycetophilidae), pp. 63-68 in Zootaxa 1874 on page 65, DOI: 10.5281/zenodo.274482
Additional file 2: of Association between time of discharge from ICU and hospital mortality: a systematic review and meta-analysis
Creators: name: Yang, Si
name: Wang, Zheng
name: Zhida Liu
name: Jinlai Wang
name: Lijun Ma
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: PRISMA 2009 checklist. (DOC 62Â kb)
Additional file 2: of Informal Health Provider and Practical Approach to Lung Health interventions to improve the detection of chronic airways disease and tuberculosis at primary care level in Malawi: study protocol for a randomised controlled trial
Creators: name: Hastings Banda
name: Mortimer, Kevin
name: Bello, George
name: Mbera, Grace
name: Namakhoma, Ireen
name: Thomson, Rachael
name: Moffat Nyirenda
name: Faragher, Brian
name: Madan, Jason
name: Malmborg, Rasmus
name: Stenberg, Berthe
name: Mpunga, James
name: Mwagomba, Beatrice
name: Gama, Elvis
name: Piddock, Katherine
name: Squire, Stephen
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer

description: Post-intervention sampling steps and summary estimates. (DOCX 19 kb)
Microascus
Creators: name: Calabon, Mark S.
name: Jones, E. B. Gareth
name: Pang, Ka-Lai
name: Abdel-Wahab, Mohamed A.
name: Jin, Jing
name: Devadatha, Bandarupalli
name: Sadaba, Resurreccion B.
name: Apurillo, Carlo Chris
name: Hyde, Kevin D.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Fungi
Ascomycota
Sordariomycetes
Microascales
Microascaceae
Microascus

description: 2.4.4 Microascus
Six Microascus species have been reported from marine habitats, isolated from seawater, sponges, corals and the deep sea (see https://marinefungi.org). We illustrate two species Microascus cinereus and M. trigonosporus (Figures 1 and 2) isolated from intertidal wood collected from the coasts of the Yellow Sea and Bohai Sea, China, that are new records for marine fungi in China (Jin et al. 2004, 2005).
description: Published as part of Calabon, Mark S., Jones, E. B. Gareth, Pang, Ka-Lai, Abdel-Wahab, Mohamed A., Jin, Jing, Devadatha, Bandarupalli, Sadaba, Resurreccion B., Apurillo, Carlo Chris & Hyde, Kevin D., 2023, Updates on the classification and numbers of marine fungi, pp. 213-238 in Botanica Marina (Warsaw, Poland) (Warsaw, Poland) 66 (4) on page 221, DOI: 10.1515/bot-2023-0032, http://zenodo.org/record/11000251
Additional file 1: Table S1. of Association between time of discharge from ICU and hospital mortality: a systematic review and meta-analysis
Creators: name: Yang, Si
name: Wang, Zheng
name: Zhida Liu
name: Jinlai Wang
name: Lijun Ma
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Database search strategies. Table S2. The justifications for the study exclusions (nâ  =â  26). Table S3. Newcastle-Ottawa quality assessment of included studies. Table S4. The main characteristics of the excluded meeting abstracts. (DOCX 98Â kb)
Additional file 8: Figure S4. of Outlier analysis of functional genomic profiles enriches for oncology targets and enables precision medicine
Creators: name: Zhu, Zhou
name: Ihle, Nathan T.
name: Rejto, Paul
name: Zarrinkar, Patrick
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Computational Biology

description: The ATARiS gene level score distribution for (A) EGFR and (B) ERBB2. A probability density estimate is computed by Gaussian kernel smoothing. (DOCX 49 kb)
Asteromyces cruciatus
Creators: name: Calabon, Mark S.
name: Jones, E. B. Gareth
name: Pang, Ka-Lai
name: Abdel-Wahab, Mohamed A.
name: Jin, Jing
name: Devadatha, Bandarupalli
name: Sadaba, Resurreccion B.
name: Apurillo, Carlo Chris
name: Hyde, Kevin D.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Fungi
Ascomycota
Asteromyces
Asteromyces cruciatus

description: 2.5.1 Asteromyces cruciatus
Asteromyces cruciatus was introduced by Moreau and Moreau (1941) from sand dunes of the Atlantic Coast of France. This species has a worldwide distribution and reported from a wide range of substrata (Jones and Ward 1973). Despite its profuse growth in culture and its wide occurrence in the marine milieu, its taxonomic position has remained unresolved. Asteromyces cruciatus was classified as incertae sedis in Index Fungorum and Species Fungorum, while Mycobank classified it under the old family name Dematiaceae. In a new study, Torres-Garcia et al. (2022) placed A. cruciatus in the Pleosporaceae based on a phylogenetic analysis of five gene markers (ITS, LSU, gapdh, rbp2, and tef1-α). Asteromyces is in a well-supported distinct clade with two marine Paradendryphiella species as its sister taxa, and closely related to both Paradendryphiella and Stemphylium, but they are markedly different in morphology. Brown (1958), Hennebert (1962), Kohlmeyer and Kohlmeyer (1964 – 1969), and Jones (1968), all report the conidia of A. cruciatus as ovoid or pyriform, smooth, thin-walled, one-celled without germ slit or pore, 10 – 20 × 4 – 9 µm, with up to 13 µm conidia developing in basipetal succession, singly on cylindrical denticles 3 – 6 × 0.5 – 1 µm. The first formed conidium is apical and retains this position. On germination, conidia often become 1-septate and these have been illustrated by Kohlmeyer and Kohlmeyer (1964 – 1969), Hennebert (1962), and Nolan (1972), who also reports 2-septate conidia. Jones and Ward (1973) investigated the effect of light on the sporulation of A. cruciatus: continuous illumination and in total darkness when conidia were unicellular. However, when subjected to black light (fluorescent lamp with a continuous spectrum maximum at 360 nm, 18 in. above plates), 1 – 6-septate conidia were formed depending on the growth media. Asteromyces cruciatus is also of interest because it can tolerate concentrations of up to 2.0 M NaCl in liquid media (Jones and Jennings 1965), with tolerance increased to 2.5 M NaCl with the addition of 0.05 M CaCl 2. Asteromyces cruciatus is beautifully illustrated in Kohlmeyer and Kohlmeyer (1964 – 1969).
description: Published as part of Calabon, Mark S., Jones, E. B. Gareth, Pang, Ka-Lai, Abdel-Wahab, Mohamed A., Jin, Jing, Devadatha, Bandarupalli, Sadaba, Resurreccion B., Apurillo, Carlo Chris & Hyde, Kevin D., 2023, Updates on the classification and numbers of marine fungi, pp. 213-238 in Botanica Marina (Warsaw, Poland) (Warsaw, Poland) 66 (4) on page 222, DOI: 10.1515/bot-2023-0032, http://zenodo.org/record/11000251
Additional file 2: of Outlier analysis of functional genomic profiles enriches for oncology targets and enables precision medicine
Creators: name: Zhu, Zhou
name: Ihle, Nathan T.
name: Rejto, Paul
name: Zarrinkar, Patrick
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer

description: An implementation of the GAP approach in matlab. (PDF 43 kb)
Three phase boundary length and effective diffusivity in modeled sintered composite solid oxide fuel cell electrodes
Creators: name: Metcalfe, Thomas Craig
Publisher: name: University of British Columbia
Year: 2008

description: Solid oxide fuel cells with graded electrodes consisting of multiple composite layers yield generally lower polarization resistances than single layer composite electrodes. Optimization of the performance of solid oxide fuel cells with graded electrode composition and/or microstructure requires an evaluation of both the three phase boundary length per unit volume and the effective diffusion coefficient in order to provide insight into how these properties vary over the design space. A numerical methodology for studying the three phase boundary length and effective diffusivity in composite electrode layers with controlled properties is developed. A three dimensional solid model of a sintered composite electrode is generated for which the mean particle diameter, composition, and total porosity may be specified as independent variables. The total three phase boundary length for the modeled electrode is calculated and tomographic methods are used to estimate the fraction of this length over which the electrochemical reactions can theoretically occur. Furthermore, the open porosity of the modeled electrode is identified and the effective diffusion coefficient is extracted from the solution of the concentration of the diffusing species within the open porosity. Selected example electrode models are used to illustrate the application of the methods developed, and the resulting connected three phase boundary length and diffusion coefficients are compared. A significant result is the need for thickness-specific effective diffusivity to be determined, rather than the general volume averaged property, for electrodes with porosity between the upper and lower percolation thresholds. As the demand for current increases, more of the connected three phase boundaries become active, and therefore a greater fraction of the electrode layer is utilized for a given geometry, resulting in a higher apparent effective diffusivity compared to the same electrode geometry operating at a lower current. The methods developed in this work may be used within a macroscopic electrode performance model to investigate optimal designs for solid oxide fuel cell electrodes with stepwise graded composition and/or microstructure.
Additional file 8: Figure S4. of Genome-wide survey and expression analysis of the OSCA gene family in rice
Creators: name: Yunshuang Li
name: Yuan, Fang
name: Zhaohong Wen
name: Yihao Li
name: Wang, Fang
name: Zhu, Tao
name: Wenqing Zhuo
name: Jin, Xi
name: Yingdian Wang
name: Heping Zhao
name: Pei, Zhen-Ming
name: Shengcheng Han
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Circadian rhythmic expression of the marker gene OsLHY in four-leaf-stage ZH11 seedlings. (DOC 56 kb)
Additional file 5: Table S2. of Analysis of Pvama1 genes from China-Myanmar border reveals little regional genetic differentiation of Plasmodium vivax populations
Creators: name: Xiaotong Zhu
name: Zhao, Pan
name: Wang, Si
name: Liu, Fei
name: Liu, Jun
name: Wang, Jian
name: Zhaoqing Yang
name: Guiyun Yan
name: Fan, Qi
name: Yaming Cao
name: Liwang Cui
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Genetic differentiation (F ST ) of the Pvama1 gene among Thai, Myanmar and China-Myanmar border populations across DI. (DOCX 14 kb)
Biatriospora borsei
Creators: name: Calabon, Mark S.
name: Jones, E. B. Gareth
name: Pang, Ka-Lai
name: Abdel-Wahab, Mohamed A.
name: Jin, Jing
name: Devadatha, Bandarupalli
name: Sadaba, Resurreccion B.
name: Apurillo, Carlo Chris
name: Hyde, Kevin D.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Fungi
Ascomycota
Dothideomycetes
Pleosporales
Biatriosporaceae
Biatriospora
Biatriospora borsei

description: 2.5.2 Biatriospora borsei
Biatriospora, typified by B. marina, was described as a sexual genus from mangrove roots in Seychelles with fusiform, 1 – 4 septate, brown to dark brown ascospores with hyaline polar chambers which release mucilage (Hyde and Borse 1986). Sequences of B. marina from a collection made in Singapore placed this species basal to Lophiostomataceae, Sporormiaceae and a group of unclassified taxa in a phylogenetic analysis of 18 S, 28 S rDNA, RPB 2 and TEF- 1α (Suetrong et al. 2009).
The genus Nigrograna was established to accommodate N. mackinnonii, a species originally described in Pyrenochaeta (de Gruyter et al. 2013). Hyde et al. (2013) established a new family Biatriosporaceae to accommodate Biatriospora. In a phylogenetic analysis using the same genes, Ahmed et al. (2014) found that N. mackinnonii grouped with B. marina, and thus referred the former species to Biatriospora. Later, four more species of Biatriospora were described from woody plants as endophytes: B. antibiotica, B. carollii, B. yasuniana and B. peruviensis (KolařÍk et al. 2017), unaware that a new family Nigrogranaceae was established to accommodate Nigrograna with N. mackinnonii as the type, and the new combination of Melanomma fuscidulum in Nigrograna and the description of the new species N. mycophila, N. norvegica and N. obliqua (Jaklitsch and Voglmayr 2016). Jaklitsch and Voglmayr (2016) voiced doubts on the identification of the Biatriospora marina isolate and the validity of the Biatriosporaceae. Consequently, KolařÍk (2018) accepted the genus Nigrograna and the family Nigrogranaceae, and transferred B. antibiotica, B. carollii, B. yasuniana and B. peruviensis to Nigrograna. After these revisions, Biatriospora became a monotypic genus but B. borsei was described as a new species in Hongsanan et al. (2020a). Biatriospora borsei clustered with B. marina (with a good support) within a group of Nigrograna spp. based on 18 S, 28 S, ITS rDNA, RPB 2 and TEF- 1α, although B. borsei is a hyphomycete with no known sexual stage. As discussed here, fresh isolates of B. marina should be collected to clarify the taxonomic position of this species, B. borsei, the genus Nigrograna and the families Biatriosporaceae and Nigrogranaceae.
description: Published as part of Calabon, Mark S., Jones, E. B. Gareth, Pang, Ka-Lai, Abdel-Wahab, Mohamed A., Jin, Jing, Devadatha, Bandarupalli, Sadaba, Resurreccion B., Apurillo, Carlo Chris & Hyde, Kevin D., 2023, Updates on the classification and numbers of marine fungi, pp. 213-238 in Botanica Marina (Warsaw, Poland) (Warsaw, Poland) 66 (4) on page 223, DOI: 10.1515/bot-2023-0032, http://zenodo.org/record/11000251
Additional file 5: Figure S2. of Outlier analysis of functional genomic profiles enriches for oncology targets and enables precision medicine
Creators: name: Zhu, Zhou
name: Ihle, Nathan T.
name: Rejto, Paul
name: Zarrinkar, Patrick
Publisher: name: Figshare
Year: 2016
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Plant Biology
subject: Computational Biology

description: Unsupervised hierarchical clustering of tumor cells by functional dependency. (A) Grouping of drop-out patterns using outlier genes, where rows correspond to genes and columns correspond to cell lines. Non-outlier genes are colored in grey as they represent non-sensitive hits. The right inset provides a zoom-in view of the yellow cluster with the vast majority of hematological lines. The full size heatmap, dendrograms and labels have been included as Additional file 6. (B) Grouping using outlier genes from the Wnt pathway. (DOCX 1164 kb)
Coniochaeta krabiensis
Creators: name: Calabon, Mark S.
name: Jones, E. B. Gareth
name: Pang, Ka-Lai
name: Abdel-Wahab, Mohamed A.
name: Jin, Jing
name: Devadatha, Bandarupalli
name: Sadaba, Resurreccion B.
name: Apurillo, Carlo Chris
name: Hyde, Kevin D.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Fungi
Ascomycota
Sordariomycetes
Coniochaetales
Coniochaetaceae
Coniochaeta
Coniochaeta krabiensis

description: 2.5.3 Coniochaeta krabiensis
Coniochaeta krabiensis formed a monophyletic group with C. tetraspora and another new species (C. arenariae) in the same study (Dayarathne et al. 2020a). Morphologically, C. krabiensis fits within the generic description of Coniochaeta with its two-layered peridium, cylindrical asci with an apical apparatus and dark brown, ellipsoidal ascospores with a germ slit which are arranged uniseriately in the asci (GarcÍa et al. 2006). Coniochaeta krabiensis differs from C. tetraspora in having longer, narrower, 8-spored asci and smaller ascospores (Cain 1961).
description: Published as part of Calabon, Mark S., Jones, E. B. Gareth, Pang, Ka-Lai, Abdel-Wahab, Mohamed A., Jin, Jing, Devadatha, Bandarupalli, Sadaba, Resurreccion B., Apurillo, Carlo Chris & Hyde, Kevin D., 2023, Updates on the classification and numbers of marine fungi, pp. 213-238 in Botanica Marina (Warsaw, Poland) (Warsaw, Poland) 66 (4) on page 223, DOI: 10.1515/bot-2023-0032, http://zenodo.org/record/11000251
The development of reconstituted translation system for peptidomimetic mRNA display synthesis
Creators: name: Stojanovic, Vesna
Publisher: name: University of British Columbia
Year: 2008

description: The generation of high affinity, selective, and in vivo-stable peptide-based drugs is currently a major challenge in the field of drug development. Technologies exist that permit the generation of a vast diversity of chemical and conformational space and an example of such a technology is mRNA display, which utilizes protein translation machinery to produce a wide array of polypeptides starting from a combinatorial library of mRNA templates. The intention of this research was to bridge mRNA display to a reconstituted translation system using protein synthesis using recombinant elements (PURE) system for a new drug discovery platform. We hypothesized that it is possible to generate mRNA-peptidomimetic fusions using reconstituted translation system and chemo-enzymatically charged tRNAs, to incorporate unnatural amino acids into mRNA-peptidomimetic fusions. Upon demonstating that the reconstituted system was functional, we have synthesized hexapeptide fusion products containing four alanine residues and one biocytin residue. Fusions were assayed using urea-PAGE in the presence of streptavidin which allowed for unambiguous evaluation of the full length fusion fraction. It was determined that overall more fusion product was generated with template that codes for biocytin early in the coding sequence, but that the percent of biocytin-containing product stays similar regardless of the biocytin place in the coding region. We have also found that the change in template untranslated region length does not improve incorporation of biocytin in dipeptide fusions within the tested range. Finally, after first unsuccessful attempts to make sarcosine hexapeptide fusions, we investigated the effect of magnesium ion concentration on the translation reaction. As a result of four series of experiments performed involving both alanine and sarcosine fusion synthesis in parallel, we concluded that an increase in magnesium concentration from 5 mM to 20 mM coincided with enabling of the reconstituted system in making hexapeptide fusions with sarcosine in a significantly high number of cases. This research work arises from the need to enable a new drug discovery tool that will allow both synthesis and affinity maturation of peptide-based compounds. It represents our pioneering efforts to develop a new technology and ultimately help bring to existence compounds of significant therapeutic value.
Isometopus sudanicus
Creators: name: Akingbohungbe, A. E.
Publisher: name: Zenodo
Year: 2006
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Miridae
Isometopus
Isometopus sudanicus

description: Isometopus sudanicus new name
Description
Isometopus longirostris Akingbohungbe was described as new from the Sudan by me in 1996, but I was unaware of the paper by Josifov (1993) in which he described Isometopus longirostris as a new species from Bulgaria. Inadvertently therefore, a homonymy had been created and, a new name must be proposed for the species from the Sudan. Accordingly, Isometopus sudanicus is hereby proposed as a replacement name. Each species is quite distinctive and not synonymous, I. sudanicus belonging in the subgenus Jehania Distant while I. longirostris Josifov belongs in Isometopus sensu stricto as characterized in my 1996 paper referred to above.
description: Published as part of Akingbohungbe, A. E., 2006, New species of Isometopinae (Hemiptera: Miridae) from Yemen with a new name for Isometopus longirostris Akingbohungbe from Sudan, pp. 27-38 in Zootaxa 1210 on page 37, DOI: 10.5281/zenodo.273415