cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Влияние погодных условий на продуктивность гибридных комбинаций сахарной свёклы
Creators: name: Т.В. Вострикова
name: М.А. Богомолов
name: Т.П. Федулова
Publisher: name: Сахар
Year: 2024
Subjects: сахарная свёкла
гибридизация
продуктивность
комбинационная способность
засухоустойчивость
ГТК.
sugar beet
hybridization
productivity
combining ability
drought resistance
HTC.

description: Изучены показатели продуктивности линий и гибридных комбинаций сахарной свёклы в контрастных погодных условиях. Установлено повышение урожайности культуры с увеличением гидротермического коэффициента (ГТК). Отобраны засухоустойчивые диплоидные линии с высокой продуктивностью. Оценена комбинационная способность скрещиваемых пар на основе МС-компонента и сростноплодного опылителя по признакам урожайности и сахаристости. В качестве тестера для скрещивания методом топкросс использована инбредная диплоидная раздельноплодная МС-линия. Выявлены диплоидные сростноплодные линии с высокой комбинационной способностью в скрещиваемых парах. Предлагается применять испытанную МС-линию в качестве тестера на комбинационную способность для сростноплодных опылителей.
description: The productivity indicators of sugar beet lines and hybrid combinations in contrasting weather conditions were studied. A rise in sugar beet yield with increasing the hydrothermal coefficient (HTC) has been established. Drought-resistant diploid lines with the high productivity were selected. The combinative ability of crossed pairs based on the MS component and a multi-seeded pollinator was assessed for the characteristics of yield and sugar content. An inbred diploid single-seeded MS-line was used as a tester for crossbreeding by the topcross method. Diploid multi-seeded lines with the high combining ability in crossed pairs have been identified. It is proposed to use the tested MS-line as a combining ability tester for multi-seeded pollinators.
Survey Of The Microbiological Safety Of Pre-Packaged Ready-To-Eat Nuts Seeds And Dried Fruit (15Ns1)
Creators: name: Food Safety Authority Of Ireland
Publisher: name: Zenodo
Year: 2018
Subjects: subject: survey
subject: ready-to-eat
subject: pathogens
subject: Listeria monocytogenes
subject: Shiga toxin-producing Escherichia coli (STEC)
subject: Salmonella
subject: Escherichia coli
subject: http://id.agrisemantics.org/gacs/C4453
subject: http://id.agrisemantics.org/gacs/C657
subject: http://id.agrisemantics.org/gacs/C89
subject: http://id.agrisemantics.org/gacs/C4274
subject: http://id.agrisemantics.org/gacs/C206
subject: http://id.agrisemantics.org/gacs/C17481

description: This survey investigated the microbiological safety of ready-to-eat, pre-packaged nuts, seeds and dried fruit available for retail sale in Ireland. In total, 982 food samples were taken. Samples were tested for Listeria monocytogenes, Shiga toxin-producing Escherichia coli (STEC), Salmonella and Escherichia coli.
description: IE; focalpoint@fsai.ie; pdf
Data-driven discovery of coordinates and governing equations
Creators: name: Champion, Kathleen
name: Lusch, Bethany
name: Kutz, J. Nathan
name: Brunton, Steven L.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Other Statistics (stat.OT)
subject: FOS: Computer and information sciences

description: The discovery of governing equations from scientific data has the potential to transform data-rich fields that lack well-characterized quantitative descriptions. Advances in sparse regression are currently enabling the tractable identification of both the structure and parameters of a nonlinear dynamical system from data. The resulting models have the fewest terms necessary to describe the dynamics, balancing model complexity with descriptive ability, and thus promoting interpretability and generalizability. This provides an algorithmic approach to Occam's razor for model discovery. However, this approach fundamentally relies on an effective coordinate system in which the dynamics have a simple representation. In this work, we design a custom autoencoder to discover a coordinate transformation into a reduced space where the dynamics may be sparsely represented. Thus, we simultaneously learn the governing equations and the associated coordinate system. We demonstrate this approach on several example high-dimensional dynamical systems with low-dimensional behavior. The resulting modeling framework combines the strengths of deep neural networks for flexible representation and sparse identification of nonlinear dynamics (SINDy) for parsimonious models. It is the first method of its kind to place the discovery of coordinates and models on an equal footing.
description: 25 pages, 6 figures; added acknowledgments
Влияние удобрений на продуктивность и технологические качества гибридов сахарной свёклы отечественной селекции
Creators: name: О.А. Минакова
name: Л.Н. Путилина
Publisher: name: Сахар
Year: 2024
Subjects: сахарная свёкла
гибриды отечественной селекции
удобрения
урожайность
технологическое качество
сбор очищенного сахара.
sugar beet
domestic hybrids
fertilizers
yield
technological quality
refined sugar yield.

description: По результатам исследования, полученным в 2022–2023 гг. в опыте с внесением удобрений, наибольшая урожайность корнеплодов сахарной свёклы отечественной селекции (51,9–53,5 т/га) была отмечена у гибрида РМС 127. Разные дозы удобрений показали практически одинаковое влияние на данный показатель. Лучшее качество сырья при переработке (максимальный коэффициент извлечения и выход сахара на заводе) выявлено у гибрида РМС 120. Максимальный сбор очищенного сахара (6,65–7,26 т/га) получен при возделывании гибридов РМС 120 и РМС 127 при разных фонах удобрений.
description: According to the results of the study obtained in 2022– 2023 in the experiment with the using of fertilizers, the highest yield of sugar beet root crops of domestic selection (51.9– 53.5 t/ha) was noted in the RMS 127 hybrid. Different doses of fertilizers showed almost the same effect on this indicator. The best quality of raw materials during processing (the maximum extraction coefficient and sugar yield at the plant) was revealed in the RMS 120 hybrid. The maximum yield of refined sugar (6.65–7.26 t/ha) was obtained by cultivating hybrids RMS 120 and RMS 127 with different fertilizer backgrounds.
Koniga R. Br., Narr. Travels
Creators: name: AL-Shehbaz, Ihsan A.
name: Barriera, Gabrielle
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Brassicales
Brassicaceae
Koniga

description: Koniga R. Br., Narr. Travels Africa 214: 1826.
Tribe: Anastaticeae DC.
Note. – Koniga is a synonym of the earlier published Lobularia Desv. (in J. Bot. Agric. 3: 162. 1815), a genus of four Macaronesian and circum-Mediterranean species one of which is naturalized worldwide (BORGEN, 1987).
description: Published as part of AL-Shehbaz, Ihsan A. & Barriera, Gabrielle, 2019, Typification of Edmond Boissier's Cruciferae (Brassicaceae) names enumerated in Flora Orientalis, pp. 1-193 in Boissiera 72 on page 102, DOI: 10.5281/zenodo.7630433
Interesting identities involving weighted representations of integers as sums of arbitrarily many squares
Creators: name: Jang, Min-Joo
name: Kane, Ben
name: Kohnen, Winfried
name: Man, Siu-Hang
Publisher: name: arXiv
Year: 2019
Subjects: subject: Number Theory (math.NT)
subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: 05A15, 05A17, 11E45, 11F11, 11F37

description: In this paper, we obtain formulas for the number of representations of positive integers as sums of arbitrarily many squares (and other polygonal numbers) with a certain natural weighting. The resulting weighted sums give Fourier coefficients of weight two quasimodular forms.
Изучение адаптивных механизмов сахарной свёклы в условиях стресса in vitro
Creators: name: Т.П. Федулова
name: Н.Н. Черкасова
name: Е.Н. Васильченко
Publisher: name: Сахар
Year: 2024
Subjects: сахарная свёкла
питательная среда
абсцизовая кислота
ферменты
стресс
in vitro
устойчивость.
sugar beet
nutrient medium
abscisic acid
enzymes
stress
resistance.

description: Изучено влияние абсцизовой кислоты на изменение метаболитного отклика растений-регенерантов сахарной свёклы в условиях стресса. Выявлен оптимальный состав селективных питательных сред с использованием абсцизовой кислоты для отбора устойчивых к засухе регенерантов. Показана возможность использования диагностики биохимических изменений при отборе устойчивых регенерантов сахарной свёклы в культуре in vitro.
description: The effect of abscisic acid on changes in the metabolite response of sugar beet regenerating plants under stress conditions was studied. The optimal composition of selective nutrient media using abcisic acid for the selection of drought-resistant regenerants has been identified. The possibility of using diagnostics of biochemical changes in the selection of resistant sugar beet regenerants in in vitro culture has been shown.
Additional file 1 of Integrated multi-omics analyses revealed the association between rheumatoid arthritis and colorectal cancer: MYO9A as a shared gene signature and an immune-related therapeutic target
Creators: name: Zhan, Zhi-Qing
name: Huang, Ze-Min
name: Lan, Qi-Wen
name: Luo, Yu-Hua
name: Li, Jia-Xin
name: Zheng, Ya-Fang
name: Chen, Ying-Zhou
name: Chen, Pei-Zhen
name: Luo, Tian-Ye
name: Sun, Baoqing
name: Cheng, Zhangkai J
Publisher: name: figshare
Year: 2024
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: Supplementary Material 1
Isochronous Partitions for Region-Based Self-Triggered Control
Creators: name: Delimpaltadakis, Giannis
name: Mazo, Manuel
Publisher: name: arXiv
Year: 2019
Subjects: subject: Systems and Control (eess.SY)
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: In this work, we propose a region-based self-triggered control (STC) scheme for nonlinear systems. The state space is partitioned into a finite number of regions, each of which is associated to a uniform inter-event time. The controller, at each sampling time instant, checks to which region does the current state belong, and correspondingly decides the next sampling time instant. To derive the regions along with their corresponding inter-event times, we use approximations of isochronous manifolds, a notion firstly introduced in [1]. This work addresses some theoretical issues of [1] and proposes an effective computational approach that generates approximations of isochronous manifolds, thus enabling the region-based STC scheme. The efficiency of both our theoretical results and the proposed algorithm are demonstrated through simulation examples.
description: One of the numerical examples contains improved results compared to older versions
Информационно-коммуникационное обеспечение процессов бизнес-анализа ресурсов и результатов свеклосахарного производства
Creators: name: Р.В. Нуждин
name: Г.В. Беляева
name: Е.В. Горковенко
Publisher: name: Сахар
Year: 2024
Subjects: бизнес-анализ
информационное обеспечение
схема учёта
аналитические счета
стандарт-кост
учёт отклонений
индикативное управление.
business analysis
information support
accounting scheme
analytical accounts
standard cost
accounting of deviations
indicative management.

description: Информационно-коммуникационное обеспечение бизнесаналитических процедур предполагает выбор подходов и разработку методических инструментов, которые в совокупности представляют собой основу алгоритмов процесса анализа. Иерархию алгоритмизационных процедур предложено выстраивать в соответствии с очерёдностью основных бизнес-процессов: заготовление сырья и материалов, производство готовой продукции, реализация готовой продукции, выявление финансовых результатов. С целью устранения противоречий и недоработок в имеющихся подходах и методиках предложено использовать систему Standard-cost, дополненную новыми учётно-аналитическими атрибутами.
description: Information and communication support of business analytical procedures involves the selection of approaches and the development of methodological tools, which together represent the basis of the algorithms of the analysis process. It is proposed to build a hierarchy of algorithmic procedures in accordance with the sequence of the main business processes: procurement of raw materials and materials, production of finished products, sale of finished products, identification of financial results. In order to eliminate contradictions and shortcomings in existing approaches and methods, it is proposed to use the Standard-cost system, supplemented by new accounting and analytical attributes.
Koniga arabica Boiss.
Creators: name: AL-Shehbaz, Ihsan A.
name: Barriera, Gabrielle
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Brassicales
Brassicaceae
Koniga
Koniga arabica

description: Koniga arabica Boiss., Diagn. Pl. Orient. 8: 26. 1849.
 Lobularia arabica (Boiss.) Muschl., Man. Fl. Egypt 1: 421. 1912.
Type: “Hab. in desertis Aegypti (Aucher), Arabiae petreae ad meridiem urbis Gaza in arenosis (Boiss.)”.
Lectotypus (first step designated by BORGEN, 1987: 66; second step designated here): EGYPT: sine loco, 1837, AucherEloy 264 (G-BOIS [G00332424]; isolecto-: G [G00371856], K [K000230466], P [P00868524]). Syntypus: PALESTINE: “Désert frontières de Palestine”, IV–V.1846, Boissier s.n. (G-BOIS [G00332423]).
Notes. – BORGEN (1987) selected one of the two syntypes cited by BOISSIER (1849), Aucher-Eloy 264, as the lectotype collection and indicated that the G-DC specimen is the lectotype. The G-DC abbreviation stands for the Prodromus herbarium, which does not have any of Aucher-Eloy collections. Instead, what she likely meant was G00371856, which has a label of Candolle’s herbarium, and such collections are part of the general herbarium (G).
However, this duplicate was not annotated by Boissier who described the species solely on the specimen in G-BOIS. Therefore, a second-step lectotypification is proposed here to solve this problem.
description: Published as part of AL-Shehbaz, Ihsan A. & Barriera, Gabrielle, 2019, Typification of Edmond Boissier's Cruciferae (Brassicaceae) names enumerated in Flora Orientalis, pp. 1-193 in Boissiera 72 on page 102, DOI: 10.5281/zenodo.7630433
Целесообразность пересева сахарной свёклы, повреждённой на ранних стадиях роста токсичными для неё гербицидами
Creators: name: Е.А. Дворянкин
Publisher: name: Сахар
Year: 2024
Subjects: сахарная свёкла
гербициды
симптомы повреждения
выпад растений
пересев культуры.
sugar beet
herbicides
symptoms of damaging
plant density reduction
crop re-seeding.

description: На основании многолетних экспериментальных данных обоснованы критерии пересева сахарной свёклы в зависимости от симптомов поражения листового аппарата токсичными для культуры гербицидами и степени изреженности посева. Показана нецелесообразность пересева сахарной свёклы в случае лёгкой и средней тяжести повреждения культуры в раннем возрасте токсичными для неё гербицидами при условии сохранения в посеве растений от 60 тыс/га и более.
description: Based on the experimental data of many years, criteria of sugar beet re-seeding depending on symptoms of leaf apparatus damaging by herbicides toxic for the crop and on level of plant density reduction have been developed. It has been shown that re-seeding of sugar beet is inexpedient in case of slight and medium damaging of the crop by toxic for it herbicides at early development stages, provided that 60 and more thousands of plants/ha remain in field.
Additional file 2 of Integrated multi-omics analyses revealed the association between rheumatoid arthritis and colorectal cancer: MYO9A as a shared gene signature and an immune-related therapeutic target
Creators: name: Zhan, Zhi-Qing
name: Huang, Ze-Min
name: Lan, Qi-Wen
name: Luo, Yu-Hua
name: Li, Jia-Xin
name: Zheng, Ya-Fang
name: Chen, Ying-Zhou
name: Chen, Pei-Zhen
name: Luo, Tian-Ye
name: Sun, Baoqing
name: Cheng, Zhangkai J
Publisher: name: figshare
Year: 2024
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: Supplementary Material 2
Оценка эффективности влияния кормового средства «Винасса» на молочную продуктивность коров
Creators: name: Н.П. Буряков
name: И.К. Медведев
name: М.А. Бурякова
name: П.А. Мамонтов
name: А.А. Ксенофонтова
name: В.Н. Кондобарова
name: Д.Е. Алёшин
Publisher: name: Сахар
Year: 2024
Subjects: отходы переработки сахара и производства дрожжей
молочная продуктивность
валовой выход жира
биохимические показатели крови коров
сепарация рациона
крупный рогатый скот.
waste from sugar processing and yeast production
milk productivity
gross fat yield
biochemical parameters of blood
separation of ration
cattle.

description: Побочные продукты переработки различных производств при оптимальном уровне их ввода в рацион позволяют увеличить показатели продуктивности сельскохозяйственных животных, а также могут положительно влиять на обменные процессы в организме. В связи с этим были изучены результаты введения разного уровня продукта переработки сахара и производства дрожжей отечественного производства в состав комбикорма лактирующих коров в количестве 4,12 и 8,25 %. Установлено, что кормовое средство «Винасса» в количестве 8,25 % в составе комбикорма повышает однородность полносмешанного рациона и снижает его сепарацию животными, что, вероятно, обусловлено его физико-химическими свойствами. У коров второй опытной группы было установлено повышение валового удоя молока 4%-ной жирности за лактацию на 7,0 % и валового выхода молочного жира на 7,0 % (разность достоверна). Введение кормового средства «Винасса» в количестве 8,25 % в составе комбикорма способствует оптимизации обменных процессов в организме, о чём свидетельствуют результаты биохимического анализа крови.
description: By-products of processing of various industries at an optimal level of their introduction into the diet of farm animals can increase the productivity of farm animals, and can also have a positive effect on metabolic processes in the body. In this regard, the introduction of different levels of sugar processing products and yeast production of domestic production into the compound feed of lactating cows in the amount of 4.12 and 8.25 % was considered. It was found that the introduction of the Vinassa feed agent in an amount of 8.25 % in the composition of the compound feed increases the uniformity of the fully mixed diet and reduces its separation by animals, which is probably due to its physico-chemical properties. In cows of the second experimental group, an increase in the gross milk yield of 4 % fat content during the milking period by 7.0 % and an increase in the gross milk fat yield by 7.0 % was found (the difference is significant). The introduction of the feed agent «Vinassa» in an amount of 8.25 % in the composition of compound feed helps to optimize metabolic processes in the body, as evidenced by the results of a biochemical blood test.
Broadband lightweight flat lenses for longwave-infrared imaging
Creators: name: Meem, Monjurul
name: Banerji, Sourangsu
name: Majumder, Apratim
name: Vasquez, Fernando Guevara
name: Sensale-Rodriguez, Berardi
name: Menon, Rajesh
Publisher: name: arXiv
Year: 2019
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We experimentally demonstrate imaging in the longwave-infrared (LWIR) spectral band (8um to 12um) using a single polymer flat lens based upon multi-level diffractive optics. The device thickness is only 10μm, and chromatic aberrations are corrected over the entire LWIR band with one surface. Due to the drastic reduction in device thickness, we are able to utilize polymers with absorption in the LWIR, allowing for inexpensive manufacturing via imprint lithography. The weight of our lens is less than 100 times those of comparable refractive lenses. We fabricated and characterized two different flat lenses. Even with about 25% absorption losses, experiments show that our flat polymer lenses obtain good imaging with field of view of ~35degrees and angular resolution less than 0.013 degrees. The flat lenses were characterized with two different commercial LWIR image sensors. Finally, we show that by using lossless, higher-refractive-index materials like silicon, focusing efficiencies in excess of 70% can be achieved over the entire LWIR band. Our results firmly establish the potential for lightweight, ultra-thin, broadband lenses for high-quality imaging in the LWIR band.
Berteroa DC.
Creators: name: AL-Shehbaz, Ihsan A.
name: Barriera, Gabrielle
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Brassicales
Brassicaceae
Berteroa

description: Berteroa DC. in Mém. Mus. Hist. Nat. 7: 232. 1821.
Tribe: Alysseae DC.
Note. – The genus includes six species native to the Mediterranean region, C Europe, and SW Asia (YÜZBAS. IOGˇLU et al., 2017).
description: Published as part of AL-Shehbaz, Ihsan A. & Barriera, Gabrielle, 2019, Typification of Edmond Boissier's Cruciferae (Brassicaceae) names enumerated in Flora Orientalis, pp. 1-193 in Boissiera 72 on page 102, DOI: 10.5281/zenodo.7630433
Tunable corrugated patterns in an active gel sheet
Creators: name: Senoussi, Anis
name: Kashida, Shunnichi
name: Maitra, Ananyo
name: Voituriez, Raphael
name: Galas, Jean-Christophe
name: Estevez-Torres, André
Publisher: name: arXiv
Year: 2019
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: Active matter locally converts chemical energy into mechanical work and, for this reason, it provides new mechanisms of pattern formation. In particular, active gels made of protein motors and filaments are far-from-equilibrium systems that exhibit spontaneous flow,[Kruse2004, Voituriez2005] leading to active turbulence in two and three dimensions[Sanchez2012, Kumar2018] and coherent flow in three dimensions[Wu2017] (3D). Although these dynamic flows reveal a characteristic length scale resulting from the interplay between active forcing and passive restoring forces, the observation of static and long-range spatial patterns in active gels has remained elusive. In this work, we demonstrate that a 2D free-standing nematic active gel, formed spontaneously by depletion forces from a 3D solution of kinesin motors and microtubule filaments, actively buckles out-of-plane into a centimeter-sized periodic corrugated sheet that is stable for several days at low activity. Importantly, the corrugations are formed in the absence of flow and their wavelength and stability are controlled by the motor concentration, in agreement with a hydrodynamic theory. At higher activities these patterns are transient with the gel becoming turbulent at longer times. Our results underline the importance of both passive and active forces in shaping active gels and indicate that a static material can be sculpted through an active mechanism.
Characterizing Round Spheres Using Half-Geodesics
Creators: name: Adelstein, Ian M
name: Schmidt, Benjamin
Publisher: name: arXiv
Year: 2019
Subjects: subject: Differential Geometry (math.DG)
subject: FOS: Mathematics

description: A half-geodesic is a closed geodesic realizing the distance between any pair of its points. All geodesics in a round sphere are half-geodesics. Conversely, this note establishes that Riemannian spheres with all geodesics closed and sufficiently many half-geodesics are round.
Berteroa graeca Boiss. & Heldr.
Creators: name: AL-Shehbaz, Ihsan A.
name: Barriera, Gabrielle
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Brassicales
Brassicaceae
Berteroa
Berteroa graeca

description: Berteroa graeca Boiss. & Heldr. in Boiss., Diagn. Pl. Orient. ser. 2, 1: 35. 1854.
Type: “Hab. in Arcadiâ occidentali circâ Andritzena, propè Pheneon et Kalavryta Arcadiae borealis (Heldr.) propè Klakines Peloponnesi (Orphanid. Fl. Graeca exs. Nº 167)”.
Lectotypus (designated here): GREECE: “in Peloponneso prope Klakines (Vulg)”, 3000' [910 m], 13–25.VI.1852, Orphanides 167 (G-BOIS [G00332425]; isolecto-: ATHU [n.v.], BM [BM000750191, BM001254085], K [K000697064], KW [KW000127911], LD [LD1047942], P [P04626677, P04717656], W [W0075609 A]). Syntypus: GREECE: “in arvis Aradia pr. Kalavryta”, VII.1848, Heldreich s.n. (BM [BM001254084]).
= Berteroa obliqua (Sm.) DC., Syst. Nat. 2: 292. 1821.
Notes. – TAN (2002: 226) listed one of the syntypes in the original protologue and indicated that ATHU, G-BOIS, and LD are the lectotype. Instead of 1852, she erroneously indicated that the year of collection was 1870, or 18 years after the publication of the species. However, despite that her action was inadequate to qualify for lectotypification because she did not use the phrase “designated here” or its equivalent (see TURLAND et al., 2018: Art. 9, note 6; MCNEILL, 2014).
Boissier in Flora Orientalis reduced B. graeca to synonymy of B. mutabilis (Vent.) DC. No material of the Heldreich syntype above was located in the G or P herbaria.
description: Published as part of AL-Shehbaz, Ihsan A. & Barriera, Gabrielle, 2019, Typification of Edmond Boissier's Cruciferae (Brassicaceae) names enumerated in Flora Orientalis, pp. 1-193 in Boissiera 72 on page 102, DOI: 10.5281/zenodo.7630433
Additional file 3 of Integrated multi-omics analyses revealed the association between rheumatoid arthritis and colorectal cancer: MYO9A as a shared gene signature and an immune-related therapeutic target
Creators: name: Zhan, Zhi-Qing
name: Huang, Ze-Min
name: Lan, Qi-Wen
name: Luo, Yu-Hua
name: Li, Jia-Xin
name: Zheng, Ya-Fang
name: Chen, Ying-Zhou
name: Chen, Pei-Zhen
name: Luo, Tian-Ye
name: Sun, Baoqing
name: Cheng, Zhangkai J
Publisher: name: figshare
Year: 2024
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: Supplementary Material 3
GENETIC ANALYSIS OF HEXAPLOID SPRING WHEAT FOR HESSIAN FLY RESISTANCE AND IMPROVED END-USE QUALITY
Creators: name: Prather, Samuel
Publisher: name: Washington State University
Year: 2024

description: Since it’s domestication over 10,000 years ago, wheat (Triticum aestivum L.) has risen to and remained a major food source for people around the globe. Current estimates place wheat as the third most produced crop, providing around 20% of all human caloric intake. Wheat is turned into a wide array of end-use products that are consumed. The vast difference in these end-use products dictate that wheat is breed and grown with different quality parameters. Chapter two of this dissertation describes a genetic analysis that was conducted on more than a dozen end-use quality traits to better understand the genetic underpinning controlling wheat quality. This genetic analysis was performed on 180 recombinant inbred lines created from the cross of wheat varieties ‘Kelse’ and ‘Scarlet’, and identified 134 loci that were significantly related to 21 wheat quality traits. Twenty-two of the loci explained more than 15% of the phenotypic variation observed in the recombinant lines. These chromosomal locations identified provide more understanding as to how breeders can best improve wheat quality. Wheat as a crop faces many biotic stresses which threaten production levels and the world food supply. One such stress is Hessian fly which is an emerging problem in the wheat producing areas of the Pacific Northwest. The best way to combat Hessian fly is with naturally occurring resistance genes that are commonly found in wheat. In chapters three and four, work is presented showing the genetic markers created in order to enhance breeding efforts to deploy a resistance gene that has shown great success in the Pacific Northwest. It also reveals the efforts to fine map the exact chromosomal location of this highly effective Hessian fly resistance gene. The resulting information provides breeders with the genetic tools to perform marker-assisted selection for Hessian fly resistance.
A microscopic description of acid-base equilibrium
Creators: name: Grifoni, Emanuele
name: Piccini, GiovanniMaria
name: Parrinello, Michele
Publisher: name: arXiv
Year: 2019
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: Computational Engineering, Finance, and Science (cs.CE)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: Acid-base reactions are ubiquitous in nature. Understanding their mechanisms is crucial in many fields, from biochemistry to industrial catalysis. Unfortunately, experiments only give limited information without much insight into the molecular behaviour. Atomistic simulations could complement experiments and shed precious light on microscopic mechanisms. The large free energy barriers connected to proton dissociation however make the use of enhanced sampling methods mandatory. Here we perform an ab initio molecular dynamics (MD) simulation and enhance sampling with the help of methadynamics. This has been made possible by the introduction of novel descriptors or collective variables (CVs) that are based on a conceptually new outlook on acid-base equilibria. We test successfully our approach on three different aqueous solutions of acetic acid, ammonia, and bicarbonate. These are representative of acid, basic, and amphoteric behaviour.
Berteroa orbiculata var. stricta Boiss.
Creators: name: AL-Shehbaz, Ihsan A.
name: Barriera, Gabrielle
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Brassicales
Brassicaceae
Berteroa
Berteroa orbiculata
Berteroa orbiculata var. stricta (boiss. & heldr.) boiss.

description: Berteroa orbiculata var. stricta (Boiss. & Heldr.) Boiss.,
Fl. Orient. 1: 291. 1867.
 Berteroa stricta Boiss. & Heldr. in Boiss., Diagn. Pl. Orient. ser. 2, 1: 35. 1854.
Type: “Hab. frequens ad radices montis Olympi Thessali propè Katarine (Heldr. Aug. 1851)”.
Holotypus: GREECE: “Freq. ad radices m. Olympi. Thessaliae pr. Katarine”, 3.VIII.1851, Heldreich 2404 (G-BOIS [G00332428]; iso-: W [W18890008656]).
= Berteroa incana (L.) DC., Syst. Nat. 2: 291. 1821.
Note. – The species was described based on G-BOIS duplicate alone and, therefore, it is the holotype.
description: Published as part of AL-Shehbaz, Ihsan A. & Barriera, Gabrielle, 2019, Typification of Edmond Boissier's Cruciferae (Brassicaceae) names enumerated in Flora Orientalis, pp. 1-193 in Boissiera 72 on page 102, DOI: 10.5281/zenodo.7630433
A general constitutive model for dense, fine particle suspensions validated in many geometries
Creators: name: Baumgarten, Aaron
name: Kamrin, Ken
Publisher: name: arXiv
Year: 2019
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: Fine particle suspensions (such as cornstarch mixed with water) exhibit dramatic changes in viscosity when sheared, producing fascinating behaviors that captivate children and rheologists alike. Recent examination of these mixtures in simple flow geometries suggests inter-granular repulsion is central to this effect --- for mixtures at rest or shearing slowly, repulsion prevents frictional contacts from forming between particles, whereas, when sheared more forcefully, granular stresses overcome the repulsion allowing particles to interact frictionally and form microscopic structures that resist flow. Previous constitutive studies of these mixtures have focused on particular cases, typically limited to two-dimensional, steady, simple shearing flows. In this work, we introduce a predictive and general, three-dimensional continuum model for this material, using mixture theory to couple the fluid and particle phases. Playing a central role in the model, we introduce a micro-structural state variable, whose evolution is deduced from small-scale physical arguments and checked with existing data. Our space- and time-dependent model is implemented numerically in a variety of unsteady, non-uniform flow configurations where it is shown to accurately capture a variety of key behaviors: (i) the continuous shear thickening (CST) and discontinuous shear thickening (DST) behavior observed in steady flows, (ii) the time-dependent propagation of `shear jamming fronts', (iii) the time-dependent propagation of `impact activated jamming fronts', and (iv) the non-Newtonian, `running on oobleck' effect wherein fast locomotors stay afloat while slow ones sink.
Berteroa ascendens var. microcarpa Boiss.
Creators: name: AL-Shehbaz, Ihsan A.
name: Barriera, Gabrielle
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Brassicales
Brassicaceae
Berteroa
Berteroa ascendens
Berteroa ascendens var. microcarpa boiss., fl.

description: Berteroa ascendens var. microcarpa Boiss., Fl. Orient. Suppl.: 52. 1888.
Type: “Hab. in collibus aridis Ponti Lazici circa Djimil 6100 (Bal.!)”.
= Berteroa incana (L.) DC., Syst. Nat. 2: 291. 1821.
Note. – No material in the Geneva or other herbaria was examined.
description: Published as part of AL-Shehbaz, Ihsan A. & Barriera, Gabrielle, 2019, Typification of Edmond Boissier's Cruciferae (Brassicaceae) names enumerated in Flora Orientalis, pp. 1-193 in Boissiera 72 on page 102, DOI: 10.5281/zenodo.7630433
Additional file 4 of Integrated multi-omics analyses revealed the association between rheumatoid arthritis and colorectal cancer: MYO9A as a shared gene signature and an immune-related therapeutic target
Creators: name: Zhan, Zhi-Qing
name: Huang, Ze-Min
name: Lan, Qi-Wen
name: Luo, Yu-Hua
name: Li, Jia-Xin
name: Zheng, Ya-Fang
name: Chen, Ying-Zhou
name: Chen, Pei-Zhen
name: Luo, Tian-Ye
name: Sun, Baoqing
name: Cheng, Zhangkai J
Publisher: name: figshare
Year: 2024
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: Supplementary Material 4
Variational implicit-solvent predictions of the dry-wet transition pathways for ligand-receptor binding and unbinding kinetics
Creators: name: Zhou, Shenggao
name: Weiß, R. Gregor
name: Cheng, Li-Tien
name: Dzubiella, Joachim
name: McCammon, J. Andrew
name: Li, Bo
Publisher: name: arXiv
Year: 2019
Subjects: subject: Biological Physics (physics.bio-ph)
subject: Soft Condensed Matter (cond-mat.soft)
subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: Ligand-receptor binding and unbinding are fundamental biomolecular processes and particularly essential to drug efficacy. Environmental water fluctuations, however, impact the corresponding thermodynamics and kinetics and thereby challenge theoretical descriptions. Here, we devise a holistic, implicit-solvent, multi-method approach to predict the (un)binding kinetics for a generic ligand-pocket model. We use the variational implicit-solvent model (VISM) to calculate the solute-solvent interfacial structures and the corresponding free energies, and combine the VISM with the string method to obtain the minimum energy paths and transition states between the various metastable ('dry' and 'wet') hydration states. The resulting dry-wet transition rates are then used in a spatially-dependent multi-state continuous-time Markov chain Brownian dynamics simulations, and the related Fokker-Planck equation calculations, of the ligand stochastic motion, providing the mean first-passage times for binding and unbinding. We find the hydration transitions to significantly slow down the binding process, in semi-quantitative agreement with existing explicit-water simulations, but significantly accelerate the unbinding process. Moreover, our methods allow the characterization of non-equilibrium hydration states of pocket and ligand during the ligand movement, for which we find substantial memory and hysteresis effects for binding versus unbinding. Our study thus provides a significant step forward towards efficient, physics-based interpretation and predictions of the complex kinetics in realistic ligand-receptor systems.
description: 6 pages, 5 figures, accepted for publication in Proc. Natl. Acad. Sci. (PNAS)
Draba L.
Creators: name: AL-Shehbaz, Ihsan A.
name: Barriera, Gabrielle
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Brassicales
Brassicaceae
Draba

description: Draba L., Sp. Pl.: 642. 1753.
Tribe: Arabideae DC.
Note. – The largest genus in the family with previously estimated 390 species (AL-SHEHBAZ, 2012) but now 402 (BRASSIBASE, 2019) that are distributed primarily in the alpine and subarctic areas of Eurasia, North America (Rocky Mts.), and South America (Andes), with a few species in the alpine areas of NW Africa.
description: Published as part of AL-Shehbaz, Ihsan A. & Barriera, Gabrielle, 2019, Typification of Edmond Boissier's Cruciferae (Brassicaceae) names enumerated in Flora Orientalis, pp. 1-193 in Boissiera 72 on page 103, DOI: 10.5281/zenodo.7630433
Additional file 5 of Integrated multi-omics analyses revealed the association between rheumatoid arthritis and colorectal cancer: MYO9A as a shared gene signature and an immune-related therapeutic target
Creators: name: Zhan, Zhi-Qing
name: Huang, Ze-Min
name: Lan, Qi-Wen
name: Luo, Yu-Hua
name: Li, Jia-Xin
name: Zheng, Ya-Fang
name: Chen, Ying-Zhou
name: Chen, Pei-Zhen
name: Luo, Tian-Ye
name: Sun, Baoqing
name: Cheng, Zhangkai J
Publisher: name: figshare
Year: 2024
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: Supplementary Material 5
Linear Dynamics Induced by Odometers
Creators: name: Bongiorno, Donatella
name: D'Aniello, Emma
name: Darji, Udayan B.
name: Di Piazza, Luisa
Publisher: name: arXiv
Year: 2019
Subjects: subject: Dynamical Systems (math.DS)
subject: FOS: Mathematics
subject: 47B33, 37B20 (Primary), 5420 (Secondary)

description: Weighted shifts are an important concrete class of operators in linear dynamics. In particular, they are an essential tool in distinguishing variety dynamical properties. Recently, a systematic study of dynamical properties of composition operators on $L^p$ spaces has been initiated. This class of operators includes weighted shifts and also allows flexibility in construction of other concrete examples. In this article, we study one such concrete class of operators, namely composition operators induced by measures on odometers. In particular, we study measures on odometers which induce mixing and transitive linear operators on $L^p$ spaces.
description: 15 pages, keywords: linear dynamics, composition operators, topological mixing, topological transitivity, odometers
Benign Overfitting in Linear Regression
Creators: name: Bartlett, Peter L.
name: Long, Philip M.
name: Lugosi, Gábor
name: Tsigler, Alexander
Publisher: name: arXiv
Year: 2019
Subjects: subject: Machine Learning (stat.ML)
subject: Machine Learning (cs.LG)
subject: Statistics Theory (math.ST)
subject: FOS: Computer and information sciences
subject: FOS: Mathematics

description: The phenomenon of benign overfitting is one of the key mysteries uncovered by deep learning methodology: deep neural networks seem to predict well, even with a perfect fit to noisy training data. Motivated by this phenomenon, we consider when a perfect fit to training data in linear regression is compatible with accurate prediction. We give a characterization of linear regression problems for which the minimum norm interpolating prediction rule has near-optimal prediction accuracy. The characterization is in terms of two notions of the effective rank of the data covariance. It shows that overparameterization is essential for benign overfitting in this setting: the number of directions in parameter space that are unimportant for prediction must significantly exceed the sample size. By studying examples of data covariance properties that this characterization shows are required for benign overfitting, we find an important role for finite-dimensional data: the accuracy of the minimum norm interpolating prediction rule approaches the best possible accuracy for a much narrower range of properties of the data distribution when the data lies in an infinite dimensional space versus when the data lies in a finite dimensional space whose dimension grows faster than the sample size.
Draba aizoides var. brevistyla Boiss.
Creators: name: AL-Shehbaz, Ihsan A.
name: Barriera, Gabrielle
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Brassicales
Brassicaceae
Draba
Draba aizoides
Draba aizoides var. brevistyla boiss., fl.

description: Draba aizoides var. brevistyla Boiss., Fl. Orient. 1: 293. 1867 [nom. illeg.] [non Neilr.].
Type: “Hab. in regione sylvaticâ Parnassi ad Gourna (Heldr!), in monte Kyllene (Orph!). Flores non vidi”.
Lectotypus (designated here): GREECE: “Legi in monte Cyllone supra Tricata”, 3500' [1070 m], 22.IV–4. V.1854, Orphanides 2649 (G-BOIS [G00332426]).
= Draba lacaitae Boiss., Fl. Orient. Suppl.: 53. 1888.
Note. – The Heldreich syntype was not located in the herbaria consulted.
description: Published as part of AL-Shehbaz, Ihsan A. & Barriera, Gabrielle, 2019, Typification of Edmond Boissier's Cruciferae (Brassicaceae) names enumerated in Flora Orientalis, pp. 1-193 in Boissiera 72 on page 103, DOI: 10.5281/zenodo.7630433
Unified phase diagram of reversible-irreversible, jamming and yielding transitions in cyclically sheared soft sphere packings
Creators: name: Das, Pallabi
name: A., Vinutha H.
name: Sastry, Srikanth
Publisher: name: arXiv
Year: 2019
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: Self-organization, and transitions from reversible to irreversible behaviour, of interacting particle assemblies driven by externally imposed stresses or deformation is of interest in comprehending diverse phenomena in soft matter. They have been investigated in a wide range of systems, such as colloidal suspensions, glasses, and granular matter. In different density and driving regimes, such behaviour is related to yielding of amorphous solids, jamming, and memory formation, \emph{etc.} How these phenomena are related to each other has not, however, been much studied. In order to obtain a unified view of the different regimes of behaviour, and transitions between them, we investigate computationally the response of soft sphere assemblies to athermal cyclic shear deformation over a wide range of densities and amplitudes of shear deformation. Cyclic shear deformation induces transitions from reversible to irreversible behaviour in both unjammed and jammed soft sphere packings. Well above isotropic jamming density ($\bf{ϕ_J}$), this transition corresponds to yielding. In the vicinity of the jamming point, up to a higher density limit we designate ${\bf ϕ_J^{cyc}}$, an unjammed phase emerges between a localised, \emph{absorbing} phase, and a diffusive, {\emph irreversible} phase. The emergence of the unjammed phase signals the shifting of the jamming point to higher densities as a result of annealing, and opens a window where shear jamming becomes possible for frictionless packings. Below $\bf{ϕ_J}$, two distinct localised states, termed point and loop reversibile, are observed. We characterise in detail the different regimes and transitions between them, and obtain a unified density-shear amplitude phase diagram.
Post-Common Envelope Binary Stars: Radiative Levitation And Blue Large-Amplitude Pulsators
Creators: name: Byrne, Conor
name: Jeffery, Simon
Publisher: name: Zenodo
Year: 2018

description: Following the recent discovery of a new class of pulsating star, the blue large-amplitude pulsators (BLAPs), pulsation stability analysis was carried out on evolutionary models of post-common envelope (CE) ejection stars of 0.3 and 0.46 solar masses. These models subsequently evolve to become a low-mass helium white dwarf and a core helium-burning extreme horizontal-branch star respectively. We investigate the effects of atomic diffusion, particularly radiative levitation, on the pulsation behaviour of the models. We find that when the models have effective temperatures comparable to those of BLAPs, the inclusion of radiative levitation allows sufficient enhancement of heavy metals to produce opacity-driven fundamental mode pulsations with periods similar to those observed in BLAPs.
Draba lacaitae Boiss.
Creators: name: AL-Shehbaz, Ihsan A.
name: Barriera, Gabrielle
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Brassicales
Brassicaceae
Draba
Draba lacaitae

description: Draba lacaitae Boiss., Fl. Orient. Suppl.: 53. 1888.
Type: “Hab. ad rupes schistosas montis Chelmos Peloponnesi prope Kalogeros 4–5000' (cl. C. Lacaita!)”.
Holotypus: GREECE: “in monte Chelmos Peloponnisus ad rupes schistosas prope mandram Kalógeros”, 4000'–5000' [1220 –1520 m], 4. V.1883, Lacaita s.n.(G-BOIS [G00332427]; iso-: B [B100241477]).
Note. – BUTTLER (1986) listed the holotype as “orig. coll.” and cited G-BOIS for it.
description: Published as part of AL-Shehbaz, Ihsan A. & Barriera, Gabrielle, 2019, Typification of Edmond Boissier's Cruciferae (Brassicaceae) names enumerated in Flora Orientalis, pp. 1-193 in Boissiera 72 on page 103, DOI: 10.5281/zenodo.7630433
The Price of Anarchy in Routing Games as a Function of the Demand
Creators: name: Cominetti, Roberto
name: Dose, Valerio
name: Scarsini, Marco
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computer Science and Game Theory (cs.GT)
subject: Optimization and Control (math.OC)
subject: FOS: Computer and information sciences
subject: FOS: Mathematics
subject: Primary 91A14. Secondary 91A43, 90C25, 90C33, 90B06, 90B10

description: The price of anarchy has become a standard measure of the efficiency of equilibria in games. Most of the literature in this area has focused on establishing worst-case bounds for specific classes of games, such as routing games or more general congestion games. Recently, the price of anarchy in routing games has been studied as a function of the traffic demand, providing asymptotic results in light and heavy traffic. The aim of this paper is to study the price of anarchy in nonatomic routing games in the intermediate region of the demand. To achieve this goal, we begin by establishing some smoothness properties of Wardrop equilibria and social optima for general smooth costs. In the case of affine costs we show that the equilibrium is piecewise linear, with break points at the demand levels at which the set of active paths changes. We prove that the number of such break points is finite, although it can be exponential in the size of the network. Exploiting a scaling law between the equilibrium and the social optimum, we derive a similar behavior for the optimal flows. We then prove that in any interval between break points the price of anarchy is smooth and it is either monotone (decreasing or increasing) over the full interval, or it decreases up to a certain minimum point in the interior of the interval and increases afterwards. We deduce that for affine costs the maximum of the price of anarchy can only occur at the break points. For general costs we provide counterexamples showing that the set of break points is not always finite.
description: 22 pages, 7 figures