cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Hamlet and the Android: Reading Emotions in Literature
Creators: name: Locatelli, Angela
Publisher: name: Skenè. Journal of Theatre and Drama Studies
Year: 2018

description: In her self-defined “neo-Stoic” view of emotions, the philosopher Martha Nussbaum adopts a classic eudemonistic perspective and defends the thesis that emotions are not blind forces, but cognitive responses to different situations, as well as forms of evaluative thought. Literature has undoubtedly contributed to the knowledge of emotions by providing an immense repertoire of 'case studies', and has uniquely illustrated the historical and social variations of emotions in relation to changing definitions of human subjectivity, while, at the same time providing its own a special assessment of emotions as cognitive human realities. Literature displays both the ability to represent and to provoke emotions, and it achieves these goals according to its changing poetics, and with a specific awareness of the historical conjunctures in which literary works are produced, as well as of the times and places represented in novels, poems and plays. I will discuss aspects of these issues with reference to an early modern tragedy (Hamlet) and a postmodern novel (Philip K. Dick’s Do Androids Dream of Electric Sheep?).
description: Skenè. Journal of Theatre and Drama Studies, Vol 4 No 1 (2018): Transitions – For Alessandro Serpieri
Qualitative Analysis of Viscous Fluid Cosmological Models satisfying the Israel-Stewart theory of Irreversible Thermodynamics
Creators: name: Coley, A A
name: Hoogen, R J van den
Publisher: name: arXiv
Year: 1996
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Isotropic and spatially homogeneous viscous fluid cosmological models are investigated using the truncated Israel-Stewart theory of irreversible thermodynamics to model the bulk viscous pressure. The governing system of differential equations is written in terms of dimensionless variables and a set of dimensionless equations of state is then utilized to complete the system. The resulting dynamical system is analyzed using geometric techniques from dynamical systems theory to find the qualitative behaviour of the Friedmann-Robertson-Walker models with bulk viscosity. In these models there exists a free parameter such that the qualitative behaviour of the models can be quite different (for certain ranges of values of this parameter) from that found in models satisfying the Eckart theory studied previously. In addition, the conditions under which the models inflate are investigated.
description: 29 pages, 8 Encapsulated PostScript Figures, uses the IOP style files
Phase transitions in solvent dependent polymer adsorption in three dimensions
Creators: name: Bradly, C J
name: Owczarek, A L
name: Prellberg, T
Publisher: name: arXiv
Year: 2019
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We consider the phase diagram of self-avoiding walks (SAW) on the simple cubic lattice subject to surface and bulk interactions, modeling an adsorbing surface and variable solvent quality for a polymer in dilute solution, respectively. We simulate SAWs at specific interaction strengths to focus on locating certain transitions and their critical behavior. By collating these new results with previous results we sketch the complete phase diagram and show how the adsorption transition is affected by changing the bulk interaction strength. This expands on recent work considering how adsorption is affected by solvent quality. We demonstrate that changes in the adsorption crossover exponent coincide with phase boundaries.
description: 5 pages, 3 figures
Gallinula angulata Sundevall 1850
Creators: name: Dean, W. Richard J.
name: Åhlander, Erik
name: Johansson, Ulf S.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Aves
Gruiformes
Rallidae
Gallinula
Gallinula angulata

description: Gallinula angulata Sundevall 1850: 110.
 VERBATIM TYPE LOCALITY: “ Hab. in Caffraria inferiore ”.
 CURRENT STATUS: Gallinula angulata Sundevall, 1850; Rallidae (Dickinson & Remsen 2013: 161).
TYPE MATERIAL: In the original type description Sundevall gave information about an adult male and a juvenile specimen. According to Sundevall’s acquisition catalogue, the original type series must have consisted of at least nine specimens. Gyldenstolpe (1926: 107) referred to NRM 569826 [7890] as “type”, which we treat here as a lectotype designation of an adult male, collected 23 March 1841 at uMlazi River. The eight paralectotypes are: NRM 90108136 [7895], an adult female collected 6 April 1841 at uMlazi River; NRM 554403 [7892], a juvenile male collected 9 April 1841 at uMlazi River; NRM 901081 [7891], an adult male collected 27 January 1842 at Apies River; NRM 554404 [7893], a pullus (not sexed) collected 14 February 1842 at Apies River; RMNH. AVES.229709 [7888], an adult male collected 29 March 1841 at uMlazi River; and RMNH. AVES.229710 [7896], a female collected 22 April 1841 at uMlazi River, both sent on exchange to Leiden in 1850; and a male collected 24 March 1841 at uMlazi River and a female collected 22 April 1841 at uMlazi River, both sent on exchange to Berlin in 1853 (but no longer found in the ZMB collection).
VERIFIED TYPE LOCALITY: uMlazi River, KwaZulu-Natal.
COMMENTS: Date and place are confirmed by journal entries. Wahlberg collected at the mouth of the uMlazi River, Durban, from 11 March to 6 May 1841.
description: Published as part of Dean, W. Richard J., Åhlander, Erik & Johansson, Ulf S., 2022, Avian type localities and the type specimens collected by Johan August Wahlberg in southern Africa, pp. 521-560 in Zootaxa 5134 (4) on page 526, DOI: 10.11646/zootaxa.5134.4.3, http://zenodo.org/record/6541737
Felicia Hemans’s History in Drama: Gender Subjectivities Revisited in The Vespers of Palermo
Creators: name: Crisafulli, Lilla Maria
Publisher: name: Skenè. Journal of Theatre and Drama Studies
Year: 2018

description: Within the framework of a transnational discourse and a new vision of Europe, that focused on the attention of Great Britain towards the South and towards Mediterranean countries, Felicia Hemans (1793-1835) fashioned a historical discourse that addressed some of the fundamental issues of the time. These issues include the new role played by women in the public sphere; the relationship, no longer just between mothers and daughters, but also between fathers and sons; the long European wars and Colonial expansion; the feminization of heroism and citizenship and the problematic presence of women warriors. All these issues, which are at the same time global and transnational, are engaged with and staged in Felicia Hemans’s plays, such as The Siege of Valencia (1823) and The Vespers of Palermo (1823). In the latter play, central to the investigation of this essay, Hemans also discusses the question of Italian freedom that Lady Morgan had already publically addressed in her volume Italy. This essay will attempt to demonstrate how Hemans reshapes gender subjectivities, in the context of national and transnational history.
description: Skenè. Journal of Theatre and Drama Studies, Vol 4 No 1 (2018): Transitions – For Alessandro Serpieri
The Excavation of a Romano-British Site at Ranscombe Hill, South Malling, East Sussex, 1976
Creators: name: Bedwin, Owen
Publisher: name: Archaeology Data Service
Year: 2021

description: Sussex Archaeological Collections, 116, 241-255
description: Part of a Romano-British farmstead was excavated in advance of road construction at the foot of Ranscombe Hill. The features found included two shallow ditches and a corn-drying oven, the stokehole of which had been filled with domestic debris after going out of use. Pottery from the site indicated occupation from the 1st century A.D. until the late fourth century.
Additional file 1: of Intraoperative immunomodulatory effects of sevoflurane versus total intravenous anesthesia with propofol in bariatric surgery (the OBESITA trial): study protocol for a randomized controlled pilot trial
Creators: name: Sousa, Giselle
name: Cruz, Fernanda
name: Heil, Luciana
name: Sobrinho, Carlos
name: Saddy, Felipe
name: Knibel, Frederico
name: Pereira, Joana
name: Schultz, Marcus
name: Pelosi, Paolo
name: Abreu, Marcelo Gama De
name: Silva, Pedro
name: Rocco, Patricia
Publisher: name: Figshare
Year: 2019
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Standard Protocol Items: Recommendations for Interventional Trials (SPIRIT) 2013 Checklist: recommended items to address in a clinical trial protocol and related documents. (DOC 124 kb)
Cohomological Field Theories with Kähler Structure
Creators: name: Park, J. -S.
Publisher: name: arXiv
Year: 1999
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Algebraic Geometry (math.AG)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: This paper is devoted to a general and self-contained approach to any cohomological field theory with Kähler structure.
description: 54 pages, based on the introductory chapters of my PhD thesis and lectures given at KIAS
Novel Functions for Dynein Adaptor RILP in Neuronal Autophagy
Creators: Khobrekar, Noopur V.
Publisher: name: Columbia University
Year: 2021
Subjects: Biology
Neurobiology
Biochemistry
Dynein
Autophagic vacuoles
Cell organelles

description: Cytoplasmic dynein is a highly conserved multi-subunit motor protein that transports a variety of cellular cargoes, including proteins and organelles, towards minus ends of microtubules. Dynein is recruited to specific subclasses of cellular organelles via a specialized class of adaptor proteins, that serve as physical scaffolds for dynein recruitment to cargoes. Recent work shows that these adaptor proteins are also capable of altering biophysical properties of dynein in vitro and in vivo. This work now finds that a dynein adaptor protein, RILP, through multiple interactors, coordinates the progression of a complex biological pathway. Autophagy is a multi-step, highly conserved pathway that involves de novo formation of a double-membraned autophagosome around ubiquitinated cellular cargoes including long-lived proteins and damaged organelles for subsequent degradation by the lysosome. My work finds a dynein adaptor protein, RILP, to control not only retrograde microtubule-based autophagosome transport but their formation as well. RILP achieves these functions by sequentially interacting with the isolation membrane protein, ATG5, and the autophagosome membrane protein, LC3. During autophagosome formation, ATG5 competes with dynein to bind to a common site within the RILP N-terminus to prevent premature initiation of autophagosome motility. Depletion or LC3-interacting site mutations in RILP prevent formation of autophagosomes as well as impede their retrograde transport. This in turn results in an accumulation of ubiquitinated cargoes, including p62/ Sequestosome-1 in cells, showing that RILP is essential for autophagic clearance in cells, a finding that has broad implications for aggregate-prone neurodegenerative diseases. Finally, this work characterizes the molecular composition of the RILP-dynein supercomplex, and identifies Lis1 (implicated in lissencephaly) as an obligate component of the RILP supercomplex. Interestingly, another dynein regulator, NudE (implicated in microcephaly) is absent. Lis1 depletion results in RILP vesicle dispersion, suggesting that it is needed for RILP-mediated dynein driven transport. Altogether, these findings show for the first time that dynein adaptor RILP controls a complex multi-step biological pathway. The unique composition of RILP supercomplex holds new possibilities for dynein regulation in vivo.
Thermodynamics of the metal-insulator transition in the extended Hubbard model
Creators: name: Schüler, M.
name: van Loon, E. G. C. P.
name: Katsnelson, M. I.
name: Wehling, T. O.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: In contrast to the Hubbard model, the extended Hubbard model, which additionally accounts for non-local interactions, lacks systemic studies of thermodynamic properties especially across the metal-insulator transition. Using a variational principle, we perform such a systematic study and describe how non-local interactions screen local correlations differently in the Fermi-liquid and in the insulator. The thermodynamics reveal that non-local interactions are at least in parts responsible for first-order metal-insulator transitions in real materials.
description: 19 pages, 9 figures. Resubmission to SciPost
3-manifold topology and the Donaldson-Witten partition function
Creators: name: Marino, Marcos
name: Moore, Gregory
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Geometric Topology (math.GT)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: We consider Donaldson-Witten theory on four-manifolds of the form $X=Y \times {\bf S}^1$ where $Y$ is a compact three-manifold. We show that there are interesting relations between the four-dimensional Donaldson invariants of $X$ and certain topological invariants of $Y$. In particular, we reinterpret a result of Meng-Taubes relating the Seiberg-Witten invariants to Reidemeister-Milnor torsion. If $b_1(Y)>1$ we show that the partition function reduces to the Casson-Walker-Lescop invariant of $Y$, as expected on formal grounds. In the case $b_1(Y)=1$ there is a correction. Consequently, in the case $b_1(Y)=1$, we observe an interesting subtlety in the standard expectations of Kaluza-Klein theory when applied to supersymmetric gauge theory compactified on a circle of small radius.
description: 35 pages, harvmac b-mode, 3 figures, minor result added
Additional file 18 of Transcriptome Analysis of Gene Families Involved in Chemosensory Function in Spodoptera littoralis (Lepidoptera: Noctuidae)
Creators: name: Walker, William
name: Roy, Amit
name: Anderson, Peter
name: Schlyter, Fredrik
name: Hansson, Bill
name: Larsson, Mattias
Publisher: name: Figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Maximum likelihood phylogenetic tree of candidate SlitCYPs sequences with other insect CYP sequences. Unrooted. Includes sequences from S. littoralis (Sl), D. melanogaster (Dmel) and B. mori (Bmor). Branches containing mitochondrial clan CYPs are colored red. S. littoralis CYPs are indicated with a larger bold font, and novel S. littoralis CYPs are marked with a “•”. Node support was assessed with 600 bootstrap replicates and values greater than 70% are shown. (PDF 532 kb)
Novel Feelings: Emotion, Duration, and the Form of the Eighteenth-Century British Novel
Creators: Cunard, Candace
Publisher: name: Columbia University
Year: 2018
Subjects: English literature
British literature
Emotions in literature
Readers (Adult)

description: One of the first features of the eighteenth-century novel to strike the modern reader is its sheer length, and yet critics have argued that these novels prioritize emotional experiences that are essentially fleeting. “Novel Feelings” corrects this imbalance by attending to ongoing emotional experiences like suspense, familiarization, frustration, and hope—both as they are represented in novels and as they characterize readerly response to novels. In so doing, I demonstrate the centrality of such protracted emotional experiences to debates about the ethics of feeling in eighteenth-century Britain. Scholarship on the sentimental novel and the literature of sensibility tends to locates the ethical work of novel feeling in short, self-contained depictions of a character’s sympathetic response to another’s suffering. Such readings often rely on texts like Henry Mackenzie’s The Man of Feeling or Laurence Sterne’s A Sentimental Journey, short works composed out of even shorter, often disjointed scenes in which the focal characters encounter and respond emotionally to the distresses of others. And yet, these fragmentary productions which deliberately deemphasize narrative connection between scenes do not provide ideal models for approaching the complex large-scale plotting of many eighteenth-century novels. Through my attention to larger-scale formal techniques for provoking and sustaining feeling throughout the duration of reading a lengthy novel, I demonstrate how writers from Samuel Richardson to Jane Austen taught readers to linger with feelings, particularly ones that might initially produce pain or discomfort. By challenging readers to remain within a feeling that refuses to be over, these novels demand a vision of ethical action that would be similarly lasting—moving beyond the comfortable closure of a judgment passed or a sympathetic tear shed to imagine a continuous, open-ended attention to others.
Fate of the $η'$ in the Quark Gluon Plasma
Creators: name: Kotov, Andrey Yu.
name: Lombardo, Maria Paola
name: Trunin, Anton M.
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: In this paper we study the $η'$ in $N_f=2+1+1$ lattice QCD simulations at finite temperature. Results are obtained from the analysis of the gluonic defined topological charge density correlator after gradient flow. Our results indicate the growth of the $η'$ mass above the pseudocritical temperature, associated with the chiral symmetry restoration. In the vicinity of the pseudocritical temperature the results are consistent with a small dip in the $η'$ mass. The magnitude of the dip is compatible with the reduction of the $η'$ mass obtained by experimental analysis and suggests that $η'$ mass comes close to zero temperature non-anomalous contribution.
description: 8 pages, 6 figures
Swimming bacteria in Poiseuille flow: the quest for active Bretherton-Jeffery trajectories
Creators: name: Junot, Gaspard
name: Figueroa-Morales, Nuris
name: Darnige, Thierry
name: Lindner, Anke
name: Soto, Rodrigo
name: Auradou, Harold
name: Clément, Eric
Publisher: name: arXiv
Year: 2019
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: Using a 3D Lagrangian tracking technique, we determine experimentally the trajectories of non-tumbling E. coli mutants swimming in a Poiseuille flow. We identify a typology of trajectories in agreement with a kinematic "active Bretherton-Jeffery" model, featuring an axi-symmetric self-propelled ellipsoid. In particular, we recover the "swinging" and "shear tumbling" kinematics predicted theoretically by Zöttl et al. Moreover using this model, we derive analytically new features such as quasi-planar piece-wise trajectories, associated with the high aspect ratio of the bacteria, as well as the existence of a drift angle around which bacteria perform closed cyclic trajectories. However, the agreement between the model predictions and the experimental results remains local in time, due to the presence of Brownian rotational noise.
Additional file 1: of Purifying selection does not drive signatures of convergent local adaptation of lodgepole pine and interior spruce
Creators: name: Mengmeng Lu
name: Hodgins, Kathryn
name: Degner, Jon
name: Yeaman, Sam
Publisher: name: Figshare
Year: 2019
Subjects: subject: Biophysics
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Table S1. Effects of environmental variables on nucleotide diversity. Figure S1. Clinal variation in nucleotide diversity in pine and spruce (LAT: latitude). Figure S2. Relationships between environmental variables and nucleotide diversity of coding-regions (CDS) in lodgepole pine and interior spruce for the convergent genes, non-convergent top candidate genes and background genes. Figure S3. Relationships between environmental variables and nucleotide diversity of non-coding-regions (non-CDS) in lodgepole pine and interior spruce for the convergent genes, non-convergent top candidate genes and background genes. Figure S4. Distribution of strength of correlations (r) between environmental variables and nucleotide diversity of coding-regions (CDS) in genes. Figure S5. Distribution of strength of correlations (r) between environmental variables and nucleotide diversity of non-coding regions (non-CDS) in genes. Figure S6. Correlations of strength of correlations (r) between environmental variables and nucleotide diversity of convergent genes between pine and spruce. Figure S7. Correlations of strength of correlations (r) between environmental variables and nucleotide diversity of coding-regions (CDS) of convergent genes between pine and spruce. Figure S8. Correlations of strength of correlations (r) between environmental variables and nucleotide diversity of non-coding regions (non-CDS) of convergent genes between pine and spruce. (DOCX 6371 kb)
title: Schweizerische Wochenschrift für Chemie und Pharmacie 35. Jahrgang 1897
Creators: name: :None
Publisher: name: Orell Füssli
Year: 1897
Subjects: subject: 615

description: Schweizerische Wochenschrift für Chemie und Pharmacie 1892 - 1913, vol. 35. 1897
Every diassociative A-loop is Moufang
Creators: name: Kinyon, Michael K.
name: Kunen, Kenneth
name: Phillips, J. D.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Group Theory (math.GR)
subject: FOS: Mathematics
subject: 20N05; 68T15

description: An A-loop is a loop in which every inner mapping is an automorphism. We settle a problem which had been open since 1956 by showing that every diassociative A-loop is Moufang.
description: 7 pages, to appear in Proc. Amer. Math. Soc. Version 2 includes additional remarks about the automated theorem prover OTTER
title: Schweizerische Wochenschrift für Chemie und Pharmacie 44. Jahrgang 1906
Creators: name: :None
Publisher: name: Orell Füssli
Year: 1906
Subjects: subject: 615

description: Schweizerische Wochenschrift für Chemie und Pharmacie 1892 - 1913, vol. 44. 1906
Novel Methodologies for the Photochemical and Photocatalytic Generation of Nitrogen-Containing Pharmacophores
Creators: Thullen, Scott Macmillan
Publisher: name: Columbia University
Year: 2018
Subjects: Chemistry
Photochemistry
Photocatalysis

description: Photochemical transformations give rise to radical intermediates that are enabling tools for constructing molecular scaffolds in alternative methods from traditional two-electron processes. Herein, we detail four discrete projects focused on harnessing photochemically-created radicals for building nitrogen-containing architectures. We first explored a formal [5+2] photochemical cycloaddition of vinyl-pyrrolidinones in order to efficiently reach densely functionalized azepane motifs from simple aldehydes and pyrrolidinones. Second, we describe the discovery and development of a cobalt and photoredox catalyzed hydroaminoalkylation of conjugated dienes to afford functionalized homoallylic amines. Third, we explored the union of metal-nitrene catalysts and photoredox in efforts to forge new aliphatic C-N bonds. Finally, we established a method for the remote functionalization of unactivated sp3 C-H bonds with nickel metallophotoredox, which can be specifically controlled to deliver a new C-C bond at different unactivated methylenes.
Additional file 15: of Transcriptome Analysis of Gene Families Involved in Chemosensory Function in Spodoptera littoralis (Lepidoptera: Noctuidae)
Creators: name: Walker, William
name: Roy, Amit
name: Anderson, Peter
name: Schlyter, Fredrik
name: Hansson, Bill
name: Larsson, Mattias
Publisher: name: Figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Hematology
subject: Plant Biology

description: Maximum likelihood cladogram of candidate SlitCXE sequences with other lepidopteran CXE/CCE sequences. Unrooted. Includes sequences from S. littoralis (Sl), E. postvittana (Epos) and Bombyx mori (Bm). S. littoralis CXE/CCEs are indicated with a larger bold font, and novel S. littoralis CXE/CCEs is marked with a “•”. Node support was assessed with 600 bootstrap replicates and values greater than 70% are shown. (PDF 386 kb)
Reading Gilbert White: W. D. Parish's annotations of The Natural History of Selborne
Creators: name: Stimpson, Felicity
Publisher: name: Archaeology Data Service
Year: 2017

description: Sussex Archaeological Collections, 154, 243-256
description: In his Introduction to the 1877 edition of Gilbert White's classic text The natural history and antiquities of Selborne, Frank Buckland writes: 'There is hardly a parish in England or Wales where the clergyman has not opportunities more or less favourable for writing a local Whites Selborne. The Reverend W. D. Parish (1833-1904), Vicar of Selmeston with Alciston (East Sussex) from 1863 until his death, took up the challenge by annotating his own copy of this edition of Whites work with observations of nature, life and customs around Selmeston which, like Selborne, sits within the South Downs. The annotations are chatty in style and often humorous, and give an insight into country life at the end of the 19th century, but they are not haphazard. Parish wrote an introduction giving his raison dêtre for his work, and an index to his notes. The resulting book, which, re-bound in two volumes, he had had interleaved with blank pages on which he wrote his notes and added sketches and newspaper cuttings, was given to Parishs old school, Charterhouse, soon after his death. It provides an opportunity to study an example of close reading and to observe the profound effect that a book can have on its readers. This article begins by comparing the lives of White and Parish and continues by examining and analysing the annotations.
title: Schweizerische Wochenschrift für Chemie und Pharmacie 39. Jahrgang 1901
Creators: name: :None
Publisher: name: Orell Füssli
Year: 1901
Subjects: subject: 615

description: Schweizerische Wochenschrift für Chemie und Pharmacie 1892 - 1913, vol. 39. 1901
Principal component analysis of nonequilibrium molecular dynamics simulations
Creators: name: Post, Matthias
name: Wolf, Steffen
name: Stock, Gerhard
Publisher: name: arXiv
Year: 2019
Subjects: subject: Biomolecules (q-bio.BM)
subject: Soft Condensed Matter (cond-mat.soft)
subject: Biological Physics (physics.bio-ph)
subject: FOS: Biological sciences
subject: FOS: Physical sciences

description: Principal component analysis (PCA) represents a standard approach to identify collective variables $\{x_i\}\!=\!\boldsymbol{x}$, which can be used to construct the free energy landscape $ΔG(\boldsymbol{x})$ of a molecular system. While PCA is routinely applied to equilibrium molecular dynamics (MD) simulations, it is less obvious how to extend the approach to nonequilibrium simulation techniques. This includes, e.g., the definition of the statistical averages employed in PCA, as well as the relation between the equilibrium free energy landscape $ΔG(\boldsymbol{x})$ and energy landscapes $Δ{\cal G} (\boldsymbol{x})$ obtained from nonequilibrium MD. As an example for a nonequilibrium method, `targeted MD' is considered which employs a moving distance constraint to enforce rare transitions along some biasing coordinate $s$. The introduced bias can be described by a weighting function $P(s)$, which provides a direct relation between equilibrium and nonequilibrium data, and thus establishes a well-defined way to perform PCA on nonequilibrium data. While the resulting distribution ${\cal P}(\boldsymbol{x})$ and energy $Δ{\cal G} \propto \ln {\cal P}$ will not reflect the equilibrium state of the system, the nonequilibrium energy landscape $Δ{\cal G} (\boldsymbol{x})$ may directly reveal the molecular reaction mechanism. Applied to targeted MD simulations of the unfolding of decaalanine, for example, a PCA performed on backbone dihedral angles is shown to discriminate several unfolding pathways. Although the formulation is in principle exact, its practical use depends critically on the choice of the biasing coordinate $s$, which should account for a naturally occurring motion between two well-defined end-states of the system.
description: This article may be downloaded for personal use only. Any other use requires prior permission of the author and AIP Publishing. This article appeared in J. Chem. Phys., 150(20), 204110 and may be found at https://aip.scitation.org/doi/10.1063/1.5089636
Additional file 13: of Transcriptome Analysis of Gene Families Involved in Chemosensory Function in Spodoptera littoralis (Lepidoptera: Noctuidae)
Creators: name: Walker, William
name: Roy, Amit
name: Anderson, Peter
name: Schlyter, Fredrik
name: Hansson, Bill
name: Larsson, Mattias
Publisher: name: Figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology

description: Maximum likelihood cladogram of candidate SlitCSP sequences with other lepidopteran CSP sequences. Unrooted. Includes sequences from S. littoralis (Slit), Heliconius melpomene (Hmel) and Bombyx mori (Bmor). S. littoralis CSPs are indicated with a larger bold font, and novel S. littoralis CSP is marked with a “•”. Node support was assessed with 600 bootstrap replicates and values greater than 70% are shown. (PDF 283 kb)
Novel Methods for the Ribosomal Incorporation of β-Amino Acids
Creators: Sanguineti, Gabriella
Publisher: name: Columbia University
Year: 2016
Subjects: Amino acids
Biochemistry--Methodology
Peptides--Synthesis
Biochemistry

description: Protein-protein interactions (PPIs) dominate all cellular functions across every domain of life. If PPIs become aberrant, they may result in many human diseases, such as cancer or Alzheimer’s. Despite their clinical significance, modulating aberrant PPIs is a daunting task. Most PPI surfaces are long, hydrophilic and structurally complex. Thus, finding molecules that moderate specific aberrant PPIs is an important goal in drug discovery research. For example, PPIs have been modulated by peptidomimetics, synthetic peptides that assume three-dimensional structures similar to proteins, but unlike natural peptides, they are proteolytically stable. However, building libraries of peptidomimetics is challenging as current methods rely on solid phase peptide synthesis, which limits the size and diversity of peptidomimetic libraries. As such, using the translation machinery to synthesize peptidomimetics is an attractive approach.
      In Chapter 1, we begin by discussing bacterial protein synthesis. Then, we delve into a detailed discussion of the application of the bacterial translation machinery for the in vitro translation of synthetic peptides. In this discussion, we review the different technologies, their advantages and limitations with respect to the incorporation of amino acids with unnatural backbones.
      After reviewing the methods used to incorporate backbone analogs, and their compatibility with the bacterial translation machinery, we describe a novel approach for the ribosomal incorporation of -amino acids analogs containing an -substituent, -hydroxy--amino acids (Chapter 2). We demonstrate that the ribosome incorporates this new class of substrates through the formation of an intermediate ester bond that rapidly rearranges to form a native peptide bond. Using this approach, we show that -hydroxy--amino acid single incorporation efficiencies are comparable the incorporation efficiencies obtained with natural amino acids.
      In Chapter 3, we apply this approach to the synthesis of peptides containing multiple -hydroxy--amino acids. This chapter describes the results obtained with the in vitro synthesis of peptides containing two consecutive -hydroxy--amino acids, three consecutive -hydroxy--amino acids, and alternating -hydroxy--amino acids and -amino acids. Based on these results, we propose experiments to improve these incorporation yields for the application of this technology for the in vitro synthesis of diverse peptidomimetic libraries.
Baseline selenium in sculpins related to the northeast coal zone
Creators: name: Carmichael, N. Bruce
Publisher: name: The University of British Columbia
Year: 2009

description: Selenium (Se) is a contaminant of particular concern for coal mines in British Columbia and elsewhere. The primary concern is uptake of the organic form of Se by fish and water birds, potentially resulting in reproductive impairments of their offspring. Because the primary concern relates to dietary uptake, tissue Se concentrations are measured and compared to tissue threshold reference values (TRVs) to determine whether or not there is a potential risk. However, Se is also an essential element that can be preferentially accumulated by organisms. Thus, background tissue concentrations need to be determined to reduce uncertainties in the application of TRVs. Extensive coal mining development is presently occurring in the northeast of British Columbia (BC), Canada, where the rocks are Se-enriched such that natural background concentrations can be elevated. This paper reports on the determination of background Se concentrations in whole bodies of slimy sculpin (Cottus cognatus) collected from reference areas both inside and outside the coal zone. Sculpins collected from reference areas within the coal zone generally had higher Se whole body concentrations than those outside the coal zone and consistently exceeded the current BC fish whole body draft interim Se guidelines, sometimes also exceeding the 50% higher USEPA draft fish whole body Se criterion for summer sampling. These data will be useful for assessing potential risks from Se released by coal mining in the northeast of BC and possibly elsewhere.
Operator-valued Riemann-Hilbert problem for correlation functions of the XXZ spin chain
Creators: name: Fujii, Yasuhiro
name: Wadati, Miki
Publisher: name: arXiv
Year: 1999
Subjects: subject: Condensed Matter (cond-mat)
subject: Functional Analysis (math.FA)
subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: The generating functional of correlation functions for the XXZ spin chain is considered in the thermodynamic limit. We derive a system of integro-difference equations that prescribe this functional. On the basis of this system we establish the operator-valued Riemann-Hilbert problem for correlation functions of the XXZ spin chain.
description: 12 pages, LaTeX2e (+ amssymb, amsthm); to appear in J. Phys. A
title: Schweizerische Wochenschrift für Chemie und Pharmacie 41. Jahrgang 1903
Creators: name: :None
Publisher: name: Orell Füssli
Year: 1903
Subjects: subject: 615

description: Schweizerische Wochenschrift für Chemie und Pharmacie 1892 - 1913, vol. 41. 1903
title: Schweizerische Wochenschrift für Chemie und Pharmacie 32. Jahrgang 1894
Creators: name: :None
Publisher: name: Orell Füssli
Year: 1894
Subjects: subject: 615

description: Schweizerische Wochenschrift für Chemie und Pharmacie 1892 - 1913, vol. 32. 1894
Additional file 2: of Outcomes by birth setting and caregiver for low risk women in Indonesia: a systematic literature review
Creators: name: Hodgkin, Kai
name: Joshy, Grace
name: Browne, Jenny
name: Istri Bartini
name: Hull, Terence
name: Kamalini Lokuge
Publisher: name: Figshare
Year: 2019
Subjects: subject: Medicine
subject: Biotechnology
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Appendix 2. Search terms. (DOCX 51 kb)
Excavations in the Parish Church of St. Thomas the Martyr, Pagham, 1976
Creators: name: Freke, D
Publisher: name: Archaeology Data Service
Year: 2021

description: Sussex Archaeological Collections, 118, 245-256
description: A substantial part of the nave and crossing of the church of St. Thomas the Martyr at Pagham was excavated prior to the installation of central hearing. Two periods of stone building pre-dating the present standing structure were uncovered, and a fragment of a tenth-century ring-headed cross was found in a grave filling.
Chaos in Periodically Perturbed Monopole + Quadrupole Like Potentials
Creators: name: Letelier, P. S.
name: Vieira, W. M.
Publisher: name: arXiv
Year: 1997
Subjects: subject: Chaotic Dynamics (nlin.CD)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: The motion of a particle that suffers the influence of simple inner (outer) periodic perturbations when it evolves around a center of attraction modeled by an inverse square law plus a quadrupole-like term is studied. The equations of motion are used to reduce the Melnikov method to the study of simple graphics.
description: 12 pages, 6 Postscript figures
Heterotetrax rueppelii
Creators: name: Dean, W. Richard J.
name: Åhlander, Erik
name: Johansson, Ulf S.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Aves
Otidiformes
Otididae
Heterotetrax
Heterotetrax rueppelii

description: Otis rüppelii Wahlberg, 1856: 174.
 VERBATIM TYPE LOCALITY: “ in campis apricis, sterilibus terrae Damararum ”
 CURRENT STATUS: Heterotetrax rueppelii (Wahlberg, 1856); Otididae (Dickinson & Remsen 2013: 165). Monotypic.
TYPE MATERIAL: Wahlberg, in his original description (1856: 174), gave measurements for both male and female. According to Sundevall’s acquisition catalogue, four specimens were received in Stockholm after Wahlberg’s death. Gyldenstolpe (1926: 99) referred to NRM 569861 [11803] as “type”, which we treat as a lectotype designation of this adult male collected 11 January 1855 near Swakopmund. The three paralectotypes are: NRM 569860 [11804], an adult male collected 18 January 1855 near Swakopmund; NRM 90108403 [11802], a female collected 12 January 1855 near Swakopmund; and a male [11805] apparently lost before 1917, and therefore not listed by Gyldenstolpe (1926). However, the specimen, NRM 90200216 [11805], a mounted female (male on the collector’s label, female on the mount label), collected 22 August 1854 in Tsaobis, has been recently found in the NRM collection.
VERIFIED TYPE LOCALITY: Onanis River near Swakopmund, Namibia.
COMMENTS: Sundevall’s acquisition catalogue gives only “Damara” as the TL, but the collection dates and place are confirmed by journal entries. Wahlberg stayed at the Onanis River near Swakopmund, from 2–18 January 1855, and was at Tsaobis on 22 August 1854.
description: Published as part of Dean, W. Richard J., Åhlander, Erik & Johansson, Ulf S., 2022, Avian type localities and the type specimens collected by Johan August Wahlberg in southern Africa, pp. 521-560 in Zootaxa 5134 (4) on page 526, DOI: 10.11646/zootaxa.5134.4.3, http://zenodo.org/record/6541737
Datenmanagementplan
Creators: name: Trautwein, Clemens
name: Lüdi, Chantal
name: Mischler, Marianne
Publisher: name: Zenodo
Year: 2024

description: Basiswissen zur Erstellung eines Datenmanagementplans: 4 Hauptbereiche eines DMP anhand Leitfragen entwickeln. Mit Leitprinzipien und Beispielen kommen sie gut ans Ziel.
Reconciling dark matter, $R_{K^{(*)}}$ anomalies and $(g-2)_μ$ in an ${L_μ-L_τ}$ scenario
Creators: name: Biswas, Anirban
name: Shaw, Avirup
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We propose an anomaly free unified scenario by invocation of an extra local ${\rm U(1)}_{L_μ-L_τ}$ gauge symmetry. This scenario simultaneously resolves the $R_{K^{(*)}}$ anomalies, the dark matter puzzle and the long-standing discrepancy in muon's anomalous magnetic moment. A complex scalar ($η$) having nonzero ${L_μ-L_τ}$ charge has been introduced to break this new U(1) symmetry spontaneously. Moreover, for the purpose of studying dark matter phenomenology and $R_{K^{(*)}}$ anomalies in a correlated manner, we introduce an inert ${\rm SU(2)}_L$ scalar doublet ($Φ$), a $\mathbb{Z}_2$-odd real singlet scalar ($S$) and a $\mathbb{Z}_2$-odd coloured fermion ($χ$) which transforms vectorially under the ${\rm U(1)}_{L_μ-L_τ}$ symmetry. This extra gauge symmetry provides a new gauge boson $Z_{μτ}$ which not only gives additional contribution to both $b\to s \ell\ell$ transition and $(g-2)_μ$ but also provides a crucial annihilation channel for dark matter candidate $ρ_1$ of the present scenario. This $ρ_1$ is an admixture of CP-even neutral component of $Φ$ and $S$. Our analysis shows that the low mass dark matter regime ($M_{ρ_1}\lesssim 60$ GeV) is still allowed by the experiments like XENON1T, LHC (via Higgs invisible branching) and Fermi-LAT, making the dark matter phenomenology drastically different from the standard Inert Doublet and the Scalar Singlet models. Furthermore, the present model is also fairly consistent with the observed branching ratio of $B\to X_sγ$ in $3σ$ range and is quite capable of explaining neutrino masses and mixings via Type-I seesaw mechanism if we add three right handed neutrinos in the particle spectrum. Finally, we use the latest ATLAS data of non-observation of a resonant $\ell^+\ell^-$ signal at the 13 TeV LHC to constrain the mass-coupling plane of $Z_{μτ}$.
description: 58 pages, 13 Figures, 3 Tables, Version published in JHEP
title: Papaver alpinum L. subsp. rhaeticum (Leresche) Markgr.
Creators: name: :None
Publisher: name: Universitätsbibliothek
Year: 2011
Subjects: subject: Digitale Pflanzenbilder: Sammlung Dietmar Brandes
subject: 580

description: Pflanzensammlung Dietmar Brandes: Digitale Pflanzenbilder
Additional file 1 of Comparison of kNN and k-means optimization methods of reference set selection for improved CNV callers performance
Creators: name: KuĹMirek, Wiktor
name: SzmurĹO, Agnieszka
name: WiewiĂłrka, Marek
name: Nowak, Robert
name: Gambin, Tomasz
Publisher: name: Figshare
Year: 2019
Subjects: subject: Cell Biology
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: The file contains extended discussion and supporting data related to: (i) comparison to the reference set selection method proposed in CLAMMS and (ii) impact of chromosomal variability on the evaluation results. (PDF 771 kb)
Some Aspects of Entanglement Wedge Cross-Section
Creators: name: Velni, Komeil Babaei
name: Mozaffar, M. Reza Mohammadi
name: Vahidinia, M. H.
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We consider the minimal area of the entanglement wedge cross section (EWCS) in Einstein gravity. In the context of holography, it is proposed that this quantity is dual to different information measures, e.g., entanglement of purification, logarithmic negativity and reflected entropy. Motivated by these proposals, we examine in detail the low and high temperature corrections to this quantity and show that it obeys the area law even in the finite temperature. We also study EWCS in nonrelativistic field theories with nontrivial Lifshitz and hyperscaling violating exponents. The resultant EWCS is an increasing function of the dynamical exponent due to the enhancement of spatial correlations between subregions for larger values of $z$. We find that EWCS is monotonically decreasing as the hyperscaling violating exponent increases. We also obtain this quantity for an entangling region with singular boundary in a three dimensional field theory and find a universal contribution where the coefficient depends on the central charge. Finally, we verify that for higher dimensional singular regions the corresponding EWCS obeys the area law.
description: 31 pages, 10 figures, title changed, updated to match the published version
Dynamical bistability in quantum dot structures: The role of Auger processes
Creators: name: Rack, A.
name: Wetzler, R.
name: Wacker, A.
name: Schöll, E.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Bistability in quantum dot structures is examined by a drift-diffusion model in combination with electron capture and emission processes. Our simulations provide a dynamic scenario with extremely long switching times of the order of months and the results are in good agreement with the experimental findings of Yusa and Sakaki [Appl. Phys. Lett. {\bf 70}, 345 (1997)]. The analysis of the data supports the importance of Auger capture processes for quantum dots.
description: 4 Pages, 5 Figures directly included
Autler-Townes splitting and acoustically induced transparency based on Love waves interacting with pillared meta-surface
Creators: name: Liu, Yuxin
name: Talbi, Abdelkrim
name: Boudouti, El Houssaine El
name: Matar, Olivier Bou
name: Pernod, Philippe
name: Djafari-Rouhani, Bahram
Publisher: name: arXiv
Year: 2019
Subjects: subject: Applied Physics (physics.app-ph)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Autler-Townes Splitting (ATS) and Electromagnetically Induced Transparency (EIT) are similar phenomena but distinct in nature. They have been widely discussed and distinguished by employing the Akaike information criterion (AIC). However, such work is lacking in acoustic system. In this work, the interaction of Love waves with two-line pillared meta-surface is numerically investigated by Finite Element Method. Acoustic analogue of ATS, Fabry-Perot resonance and cavity modes are first demonstrated in two lines of identical pillars by varying the distance between the pillar lines. By detuning the radius of one line of pillars, Fabry-Perot resonance along with two different pillar resonances give rise to the acoustic analogue of EIT (AIT) when the distance between the pillar lines is a multiple of half wavelength. ATS and AIT formula models are used to fit the transmission spectra, showing good agreements with numerical results. The quality of the fit models is quantitatively evaluated by resorting to the AIC. We show that theoretical and analytical discrimination between ATS and AIT are methodologically complementary. These results should have important consequences for potential acoustic applications such as wave control, designing of meta-materials and bio-sensors.
description: 12 pages, 17 figures