cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Sclerogibba madegassa Benoit 1952
Creators: name: Olmi, Massimo
name: Copeland, Robert S.
name: Guglielmino, Adalgisa
name: Icipe
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Sclerogibbidae
Sclerogibba
Sclerogibba madegassa

description: 6. Sclerogibba madegassa Benoit, 1952
  Material examined. New records. MOZAMBIQUE: MANICA PROVINCE:  55 Km NW Chimoio, 13°44′S 33°15′E, 550 m, 28.xi.2005, J. Halada leg., 1 J (OOLL). TANZANIA: SHINYANGA REGION: Old Shinyanga, 6.viii.1951, ex Embiid jar., E. Burtt leg., 1 ♀ (BMNH)
 Published records. OLMI & COPELAND (2011): KENYA: EASTERN: Marsabit. NYANZA: Gembe Hills (00°29.36′S 34°14.60′E).
 Hosts in Kenya. Unidentified Teratembiidae (Embiidina) (OLMI 2005b).
 Distribution. Recorded from many Afrotropical and Oriental countries (OLMI 2005b). In Africa known from Angola, Cameroon, Democratic Republic of the Congo, Gabon, Kenya, Liberia, Madagascar, Nigeria and Rwanda (OLMI 2005b, OLMI & COPELAND 2011), in addition to Mozambique and Tanzania.
description: Published as part of Olmi, Massimo, Copeland, Robert S., Guglielmino, Adalgisa & Icipe, 2015, An updated checklist of Dryinidae, Embolemidae and Sclerogibbidae (Hymenoptera) of Kenya and Burundi, with descriptions of thirteen new species, pp. 333-380 in Acta Entomologica Musei Nationalis Pragae 55 (1) on page 369, DOI: 10.5281/zenodo.5304733
Growing faba beans for certified seed
Creators: name: O'Donovan, Tim
Publisher: name: Zenodo
Year: 2021
Subjects: Legumes
Faba beans
Seeds

description: In this video, Tim O'Donovan from Seedtech describes the life cycle of growing faba beans for seed in Ireland. 1. Sowing faba beans 2. Emergence of the plants 3. Early spring growth 4. Podfill & drought 5. Harvest 6. Seed production
Cheletomimus (Hemicheyletia) wellsi
Creators: name: Salarzehi, Safoura
name: Hajizadeh, Jalil
name: Hakimitabar, Masoud
name: Ueckermann, Edward A.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Cheyletidae
Cheletomimus
Cheletomimus wellsi

description: Cheletomimus (Hemicheyletia) wellsi (Baker, 1949)
Material examined — One female, soil and fig leaf, Khomam (37°23′21″N, 49°39′30″E, alt.
- 17 m) 19 July 2017, collected by S. Salarzehi. Three females, soil of citrus garden, Chaboksar, (36°58′0″N, 50°35′0″E, alt. 216 m); 3 females, soil and weed of citrus garden, Kelachay (37°4′44″N, 50°23′43″E, alt. - 20 m); 1 female, citrus leaf, Langarud (37°11′0″N, 50°9′0″E, alt.
25 m), (Jalilirad, 2013).
 World Distribution — Cosmopolitan (Fain et al., 2002; Dogan and Ayyildiz, 2004).
description: Published as part of Salarzehi, Safoura, Hajizadeh, Jalil, Hakimitabar, Masoud & Ueckermann, Edward A., 2018, A contribution to the knowledge of cheyletid mites of Iran with redescription of Eucheyletia flabellifera (Michael, 1878) (Prostigmata: Cheyletidae), pp. 457-470 in Acarologia 58 (2) on page 465, DOI: 10.24349/acarologia/20184253, http://zenodo.org/record/5757887
Bagre marinus
Creators: name: Alexandre P. Marceniuk
name: Naércio A. Menezes
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Ariidae
Bagre
Bagre marinus

description: Bagre marinus (Mitchill, 1815)
Silurus marinus Mitchill, 1815: 433. Type locality: New York, U.S.A. No types known.
Galeichthys parrae Valenciennes in Cuvier & Valenciennes, 1840b: 33. Type locality: New York, New Orleans and Charlestown, U.S.A.; Rio de Janeiro, Brazil. Syntypes: MNHN 1565, New Orleans; MNHN A-8988, New York; MNHN A-9367 (dry), New York; MNHN B-0056, New York; MNHN B-0074, Brazil.
Galeichthys blochii Valenciennes in Cuvier & Valenciennes, 1840b: 44. Type locality: Surinam and Bahia, Brazil. No types known.
Galeichthys bahiensis Castelnau, 1855: 37, pl. 18 (fig. 1). Type locality: Bahia, Brazil. Holotype: MNHN B-692.
Aelurichthys longispinis Günther, 1864: 178. Type Locality: South America and Mexico. Syntypes: BMNH 1976.2.18.1; BMNH 1976.2.18.2.
Distribution: Eastern America.
Countries: United States, Mexico, Cuba, Belize, Honduras, Nicaragua, Costa Rica, Panama, Colombia, Venezuela, Guyana, Surinam, French Guyana and Brazil.
Habitat: Marine and brackish waters.
Maximum size: 380 mm TL.
Material examined: AMNH 52052 (8 al, 139-163 mm TL), USA, Alabama, Mobile Dauphin Island and Vicinity; MZUSP 22201 (2 al) (1 c&s), without collecting data; MZUSP 24489 (1 al), Brazil, São Paulo, Ubatuba, Ponta Grossa.
description: Published as part of Alexandre P. Marceniuk & Naércio A. Menezes, 2007, Systematics of the family Ariidae (Ostariophysi, Siluriformes), with a redefinition of the genera., pp. 1-126 in Zootaxa 1416 on pages 26-29
Late embryogenesis abundant (LEA) gene family in Salvia miltiorrhiza: identification, expression analysis, and response to drought stress
Creators: name: Chen, Juan
name: Li, Na
name: Wang, Xiaoyu
name: Meng, Xue
name: Cui, Xiaomin
name: Chen, Zhiyong
name: Ren, Hui
name: Ma, Jing
name: Liu, Hao
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Biophysics
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified

description: Late embryogenesis abundant (LEA) proteins play important roles in plant defense response to drought stress. However, genome-wide identification of the LEA gene family was not revealed in Salvia miltiorrhiza. In this study, 61 SmLEA genes were identified from S. miltiorrhiza and divided into 7 subfamilies according to their conserved domains and phylogenetic relationships. SmLEA genes contained the LEA conserved motifs and few introns. SmLEA genes of the same subfamilies had similar gene structures and predicted subcellular locations. Our results indicated that the promoters of SmLEA genes contained various cis-acting elements associated with abiotic stress response. In addition, RNA-seq and real-time PCR results suggested that SmLEA genes are specifically expressed in different tissue, and most SmLEA genes can be induced by drought stress. These results provide a valuable foundation for future functional investigations of SmLEA genes and drought stress-resistant breeding of S. miltiorrhiza.
REflex: Flexible Framework for Relation Extraction in Multiple Domains
Creators: name: Chauhan, Geeticka
name: McDermott, Matthew B. A.
name: Szolovits, Peter
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computation and Language (cs.CL)
subject: FOS: Computer and information sciences

description: Systematic comparison of methods for relation extraction (RE) is difficult because many experiments in the field are not described precisely enough to be completely reproducible and many papers fail to report ablation studies that would highlight the relative contributions of their various combined techniques. In this work, we build a unifying framework for RE, applying this on three highly used datasets (from the general, biomedical and clinical domains) with the ability to be extendable to new datasets. By performing a systematic exploration of modeling, pre-processing and training methodologies, we find that choices of pre-processing are a large contributor performance and that omission of such information can further hinder fair comparison. Other insights from our exploration allow us to provide recommendations for future research in this area.
description: accepted by BioNLP 2019 at the Association of Computation Linguistics 2019
The mTOR kinase inhibitor rapamycin enhances the expression and release of pro-inflammatory cytokine interleukin 6 modulating the activation of human microglial cells
Creators: name: Cappoli, Natalia
name: Mezzogori, Daniele
name: Tabolacci, Elisabetta
name: Coletta, Isabella
name: Navarra, Pierluigi
name: Pani, Giovambattista
name: Dello Russo, Cinzia
Publisher: name: IfADo - Leibniz Research Centre for Working Environment and Human Factors, Dortmund
Year: 2019
Subjects: HMC3 microglial cells
rapamycin
IL-6
ROS
pro-inflammatory cytokines

description: Emerging evidence suggests the potential use of rapamycin in treatment of several neurological disorders. The drug readily crosses the blood brain barrier and may exert direct immunomodulatory effects within the brain. Microglia are the main innate immune cells of the brain, thus critically involved in the initiation and development of inflammatory processes at this level. However, there are conflicting data from rodent studies about the pharmacological effects of rapamycin on microglial inflammatory responses. Considering that rodent microglia display relevant biochemical and pharmacological differences compared to human microglia, in the present study we studied the effects of rapamycin in an experimental model of human microglia, the human microglial clone 3 (HMC3) cell line. Rapamycin was tested in the nM range both under basal conditions and in cells activated with a pro-inflammatory cytokine cocktail, consisting in a mixture of interferon-γ and interleukin-1β (II). The drug significantly increased II stimulatory effect on interleukin-6 (IL-6) expression and release in the HMC3 cells, while reducing the production of free oxygen radicals (ROS) both under basal conditions and in cells activated with II. Consistently with its known molecular mechanism of action, rapamycin reduced the extent of activation of the so-called ‘mechanistic’ target of rapamycin complex 1 (mTORC1) kinase and the total amount of intracellular proteins. In contrast to rodent cells, rapamycin did not alter human microglial cell viability nor inhibited cell proliferation. Moreover, rapamycin did not exert any significant effect on the morphology of the HMC3 cells. All together these data suggest that the inhibition of mTORC1 in human microglia by rapamycin results in complex immunomodulatory effects, including a significant increase in the expression and release of the pro-inflammatory IL-6.
description: EXCLI Journal; 18:Doc779; ISSN 1611-2156
Extra data for running pipeline on chicken data with optimal primers
Creators: name: Santos, Pablo
Publisher: name: figshare
Year: 2019
Subjects: subject: 110706 Immunogenetics (incl. Genetic Immunology)
subject: FOS: Clinical medicine
subject: 60411 Population, Ecological and Evolutionary Genetics
subject: FOS: Biological sciences

description: This file contains information of primer names and sequences from an Illumina amplicon sequencing project with chicken MHC and optimal primers. This is information is mandatory for running the ACACIA pipeline. This file also contains optional (suggested) data that can be provided to the ACACIA, such as merging overlap parameters and a locus name.
Orbital Deflection of Comets by Directed Energy
Creators: name: Zhang, Qicheng
name: Lubin, Philip M.
name: Hughes, Gary B.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: Cometary impacts pose a long-term hazard to life on Earth. Impact mitigation techniques have been studied extensively, but they tend to focus on asteroid diversion. Typical asteroid interdiction schemes involve spacecraft physically intercepting the target, a task feasible only for targets identified decades in advance and in a narrow range of orbits---criteria unlikely to be satisfied by a threatening comet. Comets, however, are naturally perturbed from purely gravitational trajectories through solar heating of their surfaces which activates sublimation-driven jets. Artificial heating of a comet, such as by a laser, may supplement natural heating by the Sun to purposefully manipulate its path and thereby avoid an impact. Deflection effectiveness depends on the comet's heating response, which varies dramatically depending on factors including nucleus size, orbit and dynamical history. These factors are incorporated into a numerical orbital model to assess the effectiveness and feasibility of using high-powered laser arrays in Earth orbit and on the ground for comet deflection. Simulation results suggest that a diffraction-limited 500 m orbital or terrestrial laser array operating at 10 GW for 1% of each day over 1 yr is sufficient to fully avert the impact of a typical 500 m diameter comet with primary nongravitational parameter A1 = 2 x 10^-8 au d^-2. Strategies to avoid comet fragmentation during deflection are also discussed.
description: 13 pages, 12 figures; AJ, in press
Growth methods of c-axis oriented MgB2 thin films by pulsed laser deposition
Creators: name: Ferrando, V.
name: Amoruso, S.
name: Bellingeri, E.
name: Bruzzese, R.
name: Manfrinetti, P.
name: Marre', D.
name: Velotta, R.
name: Wang, X.
name: Ferdeghini, C.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: High quality MgB2 thin films have been obtained by pulsed laser deposition both on MgO and on Al2O3 substrates using different methods. In the standard two-step procedure, an amorphous precursor layer is deposited at room temperature starting both from stoichiometric target and from boron target: after this first step, it is annealed in magnesium atmosphere in order to crystallize the superconducting phase. The so obtained films show a strong c-axis orientation, evidenced by XRD analysis, a critical temperature up to 38 K and very high critical fields along the basal planes, up to 22T at 15K. Also an in situ one step technique for the realization of superconducting MgB2 thin films has been developed. In this case, the presence of an argon buffer gas during deposition is crucial and we observe a strong dependence of the quality of the deposited film on the background gas pressure. The influence of the Ar atmosphere has been confirmed by time and space-resolved spectroscopy measurements on the emission spectrum of the plume. The Ar pressure modifies strongly the plasma kinetics by promoting excitation and ionization of the plume species, especially of the most volatile Mg atoms, increasing their internal energy.
description: Paper presented at Boromag Workshop, Genoa 17-19 June 2002, in press on SUST
Solitons and vortices in ultracold fermionic gases
Creators: name: Karpiuk, T.
name: Brewczyk, M.
name: Rzazewski, K.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: We investigate the possibilities of generation of solitons and vortices in a degenerate gas of neutral fermionic atoms. In analogy with, already experimentally demonstrated, technique applied to gaseous Bose-Einstein condensate we propose the phase engineering of a Fermi gas as a practical route to excited states with solitons and vortices. We stress that solitons and vortices appear even in a noninteracting fermionic gas. For solitons, in a system with sufficiently large number of fermions and appropriate trap configuration, the Pauli blocking acts as the interaction between particles.
description: 4 pages, 5 figures many new results
Cirolana Leach 1818
Creators: name: Bruce, Niel L.
name: Brandt, Angelika
Publisher: name: Zenodo
Year: 2006
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Isopoda
Cirolanidae
Cirolana

description: Genus Cirolana Leach, 1818
REMARKS
 The genus Cirolana, with 100 described species, is the largest in the family Cirolanidae (Bruce 1986; Brusca et al. 1995; Bruce et al. 2002). It is known world-wide, having previously been recorded from all oceans except the Southern Ocean and polar waters. The genus occurs primarily in the shallow waters of the intertidal and on the shallow continental shelf, with only three species reliably recorded at depths greater than 1000 m (these being Cirolana australis Keable, 2001, C. bisulcata Hobbins & Jones, 1993 and C. epimerias Richardson, 1910). With the exception of C. bougaardti Kensley, 1984 and Cirolana stebbingi Nierstrasz, 1931 (both regarded as incertae sedis by Bruce 1986), all other species have been recorded at depths of less that 200 m. The genus has hitherto not been recorded from polar waters, or from latitudes greater than about 44°S and 54°N. The recent discovery of a new species of Cirolana in the Ross Sea at latitudes of 71° to 72°S is therefore a substantial extension of the known geographic distribution of the genus.
 The species conforms with the generic diagnoses given by Bruce (1986), Brusca et al. (1995), and Kensley & Schotte (1989).
description: Published as part of Bruce, Niel L. & Brandt, Angelika, 2006, A new species of Cirolana Leach, 1818 (Crustacea, Isopoda, Cirolanidae) from the western Ross Sea, Antarctica, the first record of the genus from polar waters, pp. 315-324 in Zoosystema 28 (2) on page 317, DOI: 10.5281/zenodo.5754288
Longitudinal spin-fluctuations and superconductivity in ferromagnetic ZrZn$_{2}$ from ab initio calculations
Creators: name: Santi, G.
name: Dugdale, S. B.
name: Jarlborg, T.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: The recent discovery of superconductivity coexisting with weak itinerant ferromagnetism in the $d$-electron intermetallic compound ZrZn$_{2}$ strongly suggests spin-fluctuation mediated superconductivity. {\it Ab initio} electronic structure calculations of the Fermi surface and generalized susceptibilities are performed to investigate the viability of longitudinal spin-fluctuation-induced spin-triplet superconductivity in the ferromagnetic state. The critical temperature is estimated to be of the order of 1 K. Additionally, it is shown that in spite of a strong electron-phonon coupling ($λ_{ph}=0.7$), conventional s-wave superconductivity is inhibited by the presence of strong spin-fluctuations.
description: 5 pages, 1 figure
D6.2: EOSC Architecture Design and Validation Procedure
Creators: name: Fede, Eric
Publisher: name: Zenodo
Year: 2017
Subjects: EOSC Architecture

description: This deliverable of the EOSCpilot project has as objective to define the architectural design of the interoperation of various types of infrastructures, which could participate to the future EOSC. This task has to be seen in context with the work in Work Package 5, where a possible service architecture will be proposed.
 Beyond the e-infrastructure architecture itself, this document will propose and validate technical solutions and suggest best practices for enabling interoperability across multiple federated e-infrastructures. In order to accomplish this, we will use the gap analysis of the interoperability of the existing e-infrastructure landscape (deliverable D6.1)
Iterative and Non-iterative Splitting approach of a stochastic Burgers' equation
Creators: name: Geiser, Jürgen
name: Bartecki, Karsten
Publisher: name: arXiv
Year: 2019
Subjects: subject: Numerical Analysis (math.NA)
subject: Probability (math.PR)
subject: FOS: Mathematics
subject: 35K25, 35K20, 74S10, 70G65

description: In this paper we present iterative and noniterative splitting methods, which are used to solve stochastic Burgers' equations. The non-iterative splitting methods are based on Lie-Trotter and Strang-splitting methods, while the iterative splitting approaches are based on the exponential integrators for stochastic differential equations. Based on the nonlinearity of the Burgers' equation, we have investigated that the iterative schemes are more accurate and efficient as the non-iterative methods.
description: 23 pages, 8 figures
JA INFACT WP10 T.10.4 Desirable Health Service Utilization Pilot: Desirable Health Service Utilization indicator definition and calculation instructions
Creators: name: Lyons, Ronan C.
name: Lyons, Jane
Publisher: name: Zenodo
Year: 2021
Subjects: healthcare service utilization
resilience
sql
indicator definition

description: The INFACT Desirable Health Service Utilization Pilot focused on building a semantic interoperable definition of an indicator measuring the Desirable Healthcare Service Utilization profile of a region or country based on the data routinely collected by health information systems on patients visits, consultations, prescriptions and hospitalizations. The INFACT Desirable Health Service Utilization specification includes: - Study proposal, including pilot's aim, data sources and data management, indicator definition and expected results - A SQL script with an example of the implementation of the definition as part of an ETL (extraction, transformation, and loading) process involving multiple data sources
description: This documentation was produced by the Swansea University team within the development of the Desirable Healthcare Service Utilization pilot in task 10.4 (T.10.4) in Work Package 10 of InfAct (Information for Action!), the Joint Action on Health Information
On the problem of equation of state for the $Λ$ - field
Creators: name: Podolsky, D.
Publisher: name: arXiv
Year: 2002
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Recently found accelarated expansion of our Universe is due to the presence of a new kind of matter called "$Λ$ - field" or quintessence. The limitations on its equation of state are found from the fact of its unclustering at all scales much smaller than the cosmological horizon. It is discussed how these limitations affect on the possibility to approximate the accelarated expansion by such cosmological models as the model of Chaplygin gas.
description: 7 pages, submitted to "Astronomy Letters", accepted; one reference added
Liquid actuated gravity experiments
Creators: name: Bassan, Massimo
name: De Laurentis, Martina
name: De Rosa, Rosario
name: Di Fiore, Luciano
name: Errico, Luciano
name: Garufi, Fabio
name: Grado, Aniello
name: Minenkov, Yury
name: Pucacco, Giuseppe
name: Visco, Massimo
Publisher: name: arXiv
Year: 2019
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: Classical Physics (physics.class-ph)
subject: FOS: Physical sciences

description: We describe a new actuation technique for gravity experiments based on a liquid field mass. The Characterizing idea is to modulate the gravity force acting on a test mass by controlling the level of a liquid in a suitable container. This allows to obtain a periodical gravity force without moving parts (except the liquid level) close to the TM. We describe in detail the most relevant aspects of the liquid actuator and discuss how it can be used in gravity experiments. In particular we analyse an application to test the inverse square law in the mm to cm distance region.
pH and ROS sequentially responsive podophyllotoxin prodrug micelles with surface charge-switchable and self-amplification drug release for combating multidrug resistance cancer
Creators: name: Li, Chao
name: Wang, Yifan
name: Zhang, Shuo
name: Zhang, Jiaojiao
name: Wang, Fang
name: Sun, Yunhao
name: Huang, Lirong
name: Bian, Wen
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Multidrug resistance (MDR) is one of the main reasons for tumor chemotherapy failure. Podophyllotoxin (PPT) has been reported that can suppress MDR cancer cell growth; however, effective delivery of PPT to MDR cancer cells is challenged by cascaded bio-barriers. To effectively deliver PPT to MDR cancer cells, a PPT polymeric prodrug micelle (PCDMA) with the charge-conversion capability and self-acceleration drug release function are fabricated, which is composed of a pH and reactive oxygen species (ROS) sequentially responsive PPT-polymeric prodrug and an ROS generation agent, cucurbitacin B (CuB). After reach to tumor tissue, the surface charge of PCDMA could rapidly reverse to positive in the tumor extracellular environment to promote cellular uptake. Subsequently, the PCDMA could be degraded to release PPT and CuB in response to an intracellular high ROS condition. The released CuB is competent for generating ROS, which in turn accelerates the release of PPT and CuB. Eventually, the released PPT could kill MDR cancer cells. The in vitro and in vivo studies demonstrated that PCDMA was effectively internalized by cancer cells and produces massive ROS intracellular, rapid release drug, and effectively overcame MDR compared with the control cells, due to the tumor-specific weakly acidic and ROS-rich environment. Our results suggest that the pH/ROS dual-responsive PCDMA micelles with surface charge-reversal and self-amplifying ROS-response drug release provide an excellent platform for potential MDR cancer treatment.
Extra data for running the ACACIA pipeline on chicken sequences produced with optimal primers
Creators: name: Santos, Pablo
Publisher: name: figshare
Year: 2019
Subjects: subject: 110706 Immunogenetics (incl. Genetic Immunology)
subject: FOS: Clinical medicine
subject: 60411 Population, Ecological and Evolutionary Genetics
subject: FOS: Biological sciences

description: This file contains information of primer names and sequences from an Illumina amplicon sequencing project with chicken MHC and optimal primers. This is information is mandatory for running the ACACIA pipeline. This file also contains optional (suggested) data that can be provided to the ACACIA, such as merging overlap parameters and a locus name.
Bagre panamensis
Creators: name: Alexandre P. Marceniuk
name: Naércio A. Menezes
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Ariidae
Bagre
Bagre panamensis

description: Bagre panamensis (Gill, 1863)
Aelurichthys panamensis Gill, 1863: 172. Type locality: Western coast of Central America. Holotype: USNM (not found).
Aelurichthys nuchalis Günther, 1864: 179. Type locality: Pacific coast of Panama. Holotype: MBNH 1864.1.26.344.
Aelurichthys scutatus Regan, 1907: 116, pl. 15 (fig. 2), 19 (fig.2). Type locality: Panama or Ecuador. Syntypes: BMNH 1903.5.15.328.
Aelurichthys isthmensis Regan, 1907: 117, pl. 15 (fig.1), 19 (fig. 1). Type locality: Colón (Atlantic) Panama. Syntypes: BMNH 1877.5.31.7-8.
Distribution: Western America.
Countries: Mexico, Guatemala, El Salvador, Nicaragua, Costa Rica, Panama, Colombia and Ecuador.
Habitat: Predominantly marine waters.
Maximum size: 380 mm TL.
Material examined: LACM W55-140 (10 al, 145-274 mm TL) (1 c&s), Mexico, Baja California, Almejas Bay; UMMZ 86047 (2 al, 205-215 mm TL), Mexico, Nayarit, San Blas.
description: Published as part of Alexandre P. Marceniuk & Naércio A. Menezes, 2007, Systematics of the family Ariidae (Ostariophysi, Siluriformes), with a redefinition of the genera., pp. 1-126 in Zootaxa 1416 on pages 30-31
Improved superconducting properties in nanocrystalline bulk MgB_2
Creators: name: Gümbel, A.
name: Eckert, J.
name: Fuchs, G.
name: Nenkov, K.
name: Müller, K. -H.
name: Schultz, L.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: Highly dense nanocrystalline MgB_2 bulk superconductors with distinctly improved pinning were prepared by mechanical alloying of Mg and B powders and hot compaction at ambient temperatures. The nanocrystalline samples reveal high critical current densities of 105 A/cm2 at 20 K and 1 T together with a strongly shifted irreversibility line towards higher fields resulting in H_irr(T) ~ 0.8 H_c2(T), whereas typically H_irr(T) ~ 0.5 H_c2(T) is observed for bulk untextured samples. These values exceed that of all other so far reported bulk samples and are in the range of the values of thin films. The improved pinning of this material which mainly consists of spherical grains of about 40-100 nm in size is attributed to the large number of grain boundaries.
description: 14 pages including 4 figures
Bare LO-Phonon Peak in THz-Emission Signals: a Dielectric-Function Analysis
Creators: name: Souza, Fabricio M.
name: Egues, J. C.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We present a normal-mode analysis of coupled photocarrier-phonon dynamics in Te. We consider a dielectric function which accounts for LO phonons and the electron-hole gas within the Debye-Huckel model and RPA. Our main finding is the existence of a bare LO phonon mode in the system even at high carrier density. This oscillation is an unscreened L- mode arising from ineffective screening at large wave vectors. This mode is consistent with the bare LO-phonon peak in recent THz-emission spectra of Te.
description: 3 pages, 1 figure, Special Issue: Proceedings of the 10th Brazilian Workshop on Semiconductor Physics, Guaruja/SP, April/2001
D1.4 Workshop 1 Report
Creators: name: Aashna Mittal
name: Bishal Dahal
Publisher: name: Zenodo
Year: 2020

description: An early engagement workshop was organized in Month 9 of the WATERAGRI project to provide internal and external stakeholders with a general overview of the WATERAGRI project and obtain their feedback. This document presents the planning, execution and results of this workshop.
Proprioseiopsina Chant & McMurtry
Creators: name: Kreiter, Serge
name: Abo-Shnaf, Reham I. A.
name: Payet, Rose-My
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Mesostigmata
Phytoseiidae

description: Subtribe Proprioseiopsina Chant & McMurtry  Proprioseiopsina Chant & McMurtry, 2004: 219.
description: Published as part of Kreiter, Serge, Abo-Shnaf, Reham I. A. & Payet, Rose-My, 2020, Phytoseiid mites of Mayotte Island (Acari: Mesostigmata), pp. 622-642 in Acarologia 60 (3) on page 632, DOI: 10.24349/acarologia/20204391, http://zenodo.org/record/5754235
Information for running the ACACIA pipeline
Creators: name: Santos, Pablo
Publisher: name: figshare
Year: 2019
Subjects: subject: 110706 Immunogenetics (incl. Genetic Immunology)
subject: FOS: Clinical medicine
subject: 60411 Population, Ecological and Evolutionary Genetics
subject: FOS: Biological sciences

description: This file contains information of primer names and sequences from an Illumina amplicon sequencing project with chicken MHC and optimal primers. This is information is mandatory for running the ACACIA pipeline. This file also contains optional (suggested) data that can be provided to the ACACIA, such as merging overlap parameters and a locus name.
Numerical study of the coupled time-dependent Gross-Pitaevskii equation: Application to Bose-Einstein condensation
Creators: name: Adhikari, Sadhan K.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: We present a numerical study of the coupled time-dependent Gross-Pitaevskii equation, which describes the Bose-Einstein condensate of several types of trapped bosons at ultralow temperature with both attractive and repulsive interatomic interactions. The same approach is used to study both stationary and time-evolution problems. We consider up to four types of atoms in the study of stationary problems. We consider the time-evolution problems where the frequencies of the traps or the atomic scattering lengths are suddenly changed in a stable preformed condensate. We also study the effect of periodically varying these frequencies or scattering lengths on a preformed condensate. These changes introduce oscillations in the condensate which are studied in detail. Good convergence is obtained in all cases studied.
description: 9 pages, 10 figures, accepted in Physical Review E
Comparing Long-Duration Gamma-Ray Flares and High-Energy Solar Energetic Particles
Creators: name: de Nolfo, G. A.
name: Bruno, A.
name: Ryan, J. M.
name: Dalla, S.
name: Giacalone, J.
name: Richardson, I. G.
name: Christian, E. R.
name: Stochaj, S. J.
name: Bazilevskaya, G. A.
name: Boezio, M.
name: Martucci, M.
name: Mikhailov, V. V.
name: Munini, R.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Space Physics (physics.space-ph)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Little is known about the origin of the high-energy and sustained emission from solar Long-Duration Gamma-Ray Flares (LDGRFs), identified with the Compton Gamma Ray Observatory (CGRO), the Solar Maximum Mission (SMM), and now Fermi. Though Fermi/Large Area Space Telescope (LAT) has identified dozens of flares with LDGRF signature, the nature of this phenomenon has been a challenge to explain both due to the extreme energies and long durations. The highest-energy emission has generally been attributed to pion production from the interaction of >300 MeV protons with the ambient matter. The extended duration suggests that particle acceleration occurs over large volumes extending high in the corona, either from stochastic acceleration within large coronal loops or from back precipitation from coronal mass ejection driven shocks. It is possible to test these models by making direct comparison between the properties of the accelerated ion population producing the gamma-ray emission derived from the Fermi/LAT observations, and the characteristics of solar energetic particles (SEPs) measured by the Payload for Matter-Antimatter Exploration and Light Nuclei Astrophysics (PAMELA) spacecraft in the energy range corresponding to the pion-related emission detected with Fermi. For fourteen of these events we compare the two populations -- SEPs in space and the interacting particles at the Sun -- and discuss the implications in terms of potential sources. Our analysis shows that the two proton numbers are poorly correlated, with their ratio spanning more than five orders of magnitude, suggesting that the back precipitation of shock-acceleration particles is unlikely the source of the LDGRF emission.
description: Accepted for publication in ApJ
Felichthys filamentosus
Creators: name: Alexandre P. Marceniuk
name: Naércio A. Menezes
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Siluriformes
Ariidae
Felichthys
Felichthys filamentosus

description: Felichthys filamentosus Swainson, 1839: 392.
Type locality: Estuaries and rivers near Pernambuco, Brazil. No types known.
description: Published as part of Alexandre P. Marceniuk & Naércio A. Menezes, 2007, Systematics of the family Ariidae (Ostariophysi, Siluriformes), with a redefinition of the genera., pp. 1-126 in Zootaxa 1416 on page 31
Controlling Cavity Magnon Polariton Properties in Frequency and Time Domain
Creators: name: Wolz, Tim
Publisher: name: Karlsruher Institut für Technologie (KIT)
Year: 2021
Subjects: cavity
magnon
information processing devices
fluctuations
frequency noise
time series analysis
coupling strength
coherent control
hybrid systems
decoherence
cavity-magnonics

description: The cavity-magnon-polariton (CMP) is the quasi-particle of a hybrid system that connects photonic excitations to magnonic ones. With this connection, the CMP is an ideal candidate to build a bridge between the promising fields of quantum computing and magnonics. However, for the CMP to fulfill its role as an effective interface, a robust control of its underlying physical properties is imperative. Here, we show how the coupling strength can be manipulated within the experiment by a second continuous drive tone applied directly to the magnon system. Furthermore, switching into the time-domain, we demonstrate a coherent control over the different CMP modes based on ns-short pulses to both oscillating systems. At last, frequency fluctuations are investigated with the future goal of improving magnon coherence times.
A minimal model for slow, sub-Rayleigh, super-shear and unsteady rupture propagation along homogeneously loaded frictional interfaces
Creators: name: Thøgersen, Kjetil
name: Sveinsson, Henrik Andersen
name: Amundsen, David Skålid
name: Scheibert, Julien
name: Renard, François
name: Malthe-Sørenssen, Anders
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: In nature and experiments, a large variety of rupture speeds and front modes along frictional interfaces are observed. Here, we introduce a minimal model for the rupture of homogeneously loaded interfaces with velocity strengthening dynamic friction, containing only two dimensionless parameters; $\bar τ$ which governs the prestress, and $\bar α$ which is set by the dynamic viscosity. This model contains a large variety of front types, including slow fronts, sub-Rayleigh fronts, super-shear fronts, slip pulses, cracks, arresting fronts and fronts that alternate between arresting and propagating phases. Our results indicate that this wide range of front types is an inherent property of frictional systems with velocity strengthening branches.
Reduction of the effective mass of the Reissner-Nordstrom spacetime
Creators: name: Barbachoux, C.
name: Gariel, J.
name: Marcilhacy, G.
name: Santos, N. O.
Publisher: name: arXiv
Year: 2002
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We derive the Teixeira, Wolk and Som method, for obtaining electrostatic solutions from given vacuum solutions, in its inverse form. Then we use it to obtain the geometrical mass $M_S$ in the Schwarzschild spacetime, and we find $M_S^2=M^2-Q^2$, where $M$ and $Q$ are, respectively, the mass and charge parameters of the Reissner-Nordström spacetime. We compare $M_S$ to the corresponding active gravitational mass and mass function.
description: accepted in Int.J.Mod.Phys. D some changes have been performed and the bibliography had been enlarged
Supporting information related to the paper entitled "Phylogeography of the Dendrocolaptes picumnus (Aves: Dendrocolaptidae) species complex: new insights on the diversification of a trans-American lineage
Creators: name: Santana, Antonita
name: Silva, Sofia Marques
name: Nascimento, Nayron Francês Do
name: Sampaio, Iracilda
name: Aleixo, Alexandre
Publisher: name: Zenodo
Year: 2021
Subjects: Andes, Amazonia, Central America, Chaco, cryptic speciation, species limits

description: This link contains supporting information related to the paper entitled "Phylogeography of the Dendrocolaptes picumnus (Aves: Dendrocolaptidae) species complex: new insights on the diversification of a trans-American lineage", as follows: Figure S1, Figure S2, Figure S3, Figure S4, Figure S5, Figure S6, Figure S7, Table S1, Table S2, and Table S3.
Self-organized criticality in a model of collective bank bankruptcies
Creators: name: Aleksiejuk, Agata
name: Holyst, Janusz A.
name: Kossinets, Gueorgi
Publisher: name: arXiv
Year: 2001
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: General Finance (q-fin.GN)
subject: FOS: Physical sciences
subject: FOS: Economics and business

description: The question we address here is of whether phenomena of collective bankruptcies are related to self-organized criticality. In order to answer it we propose a simple model of banking networks based on the random directed percolation. We study effects of one bank failure on the nucleation of contagion phase in a financial market. We recognize the power law distribution of contagion sizes in 3d- and 4d-networks as an indicator of SOC behavior. The SOC dynamics was not detected in 2d-lattices. The difference between 2d- and 3d- or 4d-systems is explained due to the percolation theory.
description: For Int. J. Mod. Phys. C 13, No. 3, six pages including four figures
Torymus phillyreae RUSCHKA
Creators: name: Do, M.
name: A. K
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Torymidae
Torymus
Torymus phillyreae

description: Torymus phillyreae RUSCHKA (Fig. 7 a-e)
 Torymus phillyreae RUSCHKA 1921: 340-341. Lectotype female, (NHMW), designated by GRAHAM & GIJSWIJT (1998).
The synonym list host list were given by GRAHAM & GIJSWIJT (1998).
 D i s t r i b u t i o n. France, Great Britain, Ireland, Netherlands, Sweden ( GRAHAM & GIJSWIJT 1998).
D i a g n o s i s. Body (Fig. 7 a) with ovipositor sheaths as long as metasoma plus half of mesosoma; index 2.0. Head with OOL 1.27 OD; POL 1.8 times OOL. Malar space 0.4 length of eye. Mouth 1.5 malar space. Antenna (Fig. 7 e) with anellus slightly broader than long. Scutellum (Fig. 7 b) finely reticulated; propodeum (Fig. 7 c) finely longitudinally striated; Hind coxa 1.8 times as long as broad, with many setae dorsally in basal half. Forewing (Fig. 7 d) with basal cell, on upper surface of forewing, with a row of setae below SM; spurs of hind tibia not so very unequal, the shorter spur 0.8 the length of the longer spur; tip of hypopygium extending ¼ along gaster.
 S t u d i e d m a t e r i a l s: 10 females, Egypt: Alexandria, Alameria District, 30°59'54"N, 29°49'70"E, 09.iii. 2013, emerged from galls of Asphondylia conglomerata on Atriplex halimus, leg. Ayman Kh. Elsayed, Cat. No:005-04 (MKUI).
 B i o l o g y. It may be a hyperparasitoid or parasitoid on Asphondylia conglomerata on Atriplex halimus and has low level of parasitism during the period from January to April.
D i s t r i b u t i o n. Egypt, Alexandria.
description: Published as part of Do, M. & A. K, 2013, Parasitoids complex of Asphondylia conglomerata De STEFANI (Diptera: Cecidomyiidae) on the Mediterranean Saltbush, Atriplex halimus L. (Chenopodiaceae) in Egypt, with descriptions of new species from Eulophidae and Torymidae (Hymenoptera: Chalcidoidea), pp. 1799-1811 in Linzer biologische Beiträge 45 (2) on pages 1808-1809, DOI: 10.5281/zenodo.5346157
Euseiini Chant & McMurtry
Creators: name: Kreiter, Serge
name: Abo-Shnaf, Reham I. A.
name: Payet, Rose-My
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Mesostigmata
Phytoseiidae

description: Tribe Euseiini Chant & McMurtry  Euseiini Chant & McMurtry 2005b: 191.
description: Published as part of Kreiter, Serge, Abo-Shnaf, Reham I. A. & Payet, Rose-My, 2020, Phytoseiid mites of Mayotte Island (Acari: Mesostigmata), pp. 622-642 in Acarologia 60 (3) on page 633, DOI: 10.24349/acarologia/20204391, http://zenodo.org/record/5754235
MOESM1 of Early warning indicators for mesophilic anaerobic digestion of corn stalk: a combined experimental and simulation approach
Creators: name: Wu, Yiran
name: Kovalovszki, Adam
name: Pan, Jiahao
name: Lin, Cong
name: Liu, Hongbin
name: Duan, Na
name: Angelidaki, Irini
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Virology
subject: Computational Biology

description: Additional file 1: Fig. S1. Variation of effluent TS and VS in (a) R1 and (b) R2. Fig. S2. Variation of pH in (a) R1 and (b) R2.
Effective theory of incompressible quantum Hall liquid crystals
Creators: name: Fogler, Michael M.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: I propose an effective theory of zero-temperature phases of the quantum Hall stipes: a smectic phase where the stripes are static and a novel quantum nematic phase where the positional order is destroyed by quantum fluctuations. The nematic is viewed as a Bose condensate of dislocations whose interactions are mediated by a U(1) gauge field. Collective mode spectrum and the dynamical structure factor in the two phases are calculated.
description: 5 pages, 2 figures
Theorems on existence and global dynamics for the Einstein equations
Creators: name: Rendall, Alan D.
Publisher: name: arXiv
Year: 2002
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: This article is a guide to theorems on existence and global dynamics of solutions of the Einstein equations. It draws attention to open questions in the field. The local in time Cauchy problem, which is relatively well understood, is surveyed. Global results for solutions with various types of symmetry are discussed. A selection of results from Newtonian theory and special relativity which offer useful comparisons is presented. Treatments of global results in the case of small data and results on constructing spacetimes with prescribed singularity structure are given. A conjectural picture of the asymptotic behaviour of general cosmological solutions of the Einstein equations is built up. Some miscellaneous topics connected with the main theme are collected in a separate section.
description: 54 pages, submitted to Living Reviews in Relativity
Additional file 2 of Rapamycin improves the quality and developmental competence of mice oocytes by promoting DNA damage repair during in vitro maturation
Creators: name: Yang, Qiyu
name: Xi, Qingsong
name: Wang, Meng
name: Long, Rui
name: Hu, Juan
name: Li, Zhou
name: Ren, Xinling
name: Zhu, Lixia
name: Jin, Lei
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: Science Policy
subject: Developmental Biology
subject: Cancer

description: Additional file 2: Supplemental Table 1. Primers used for real-time PCR.
Many-body chaos in the antiferromagnetic quantum critical metal
Creators: name: Lunts, Peter
name: Patel, Aavishkar A.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We compute the scrambling rate at the antiferromagnetic (AFM) quantum critical point, using the fixed point theory of Phys. Rev. X $\boldsymbol{7}$, 021010 (2017). At this strongly coupled fixed point, there is an emergent control parameter $w \ll 1$ that is a ratio of natural parameters of the theory. The strong coupling is unequally felt by the two degrees of freedom: the bosonic AFM collective mode is heavily dressed by interactions with the electrons, while the electron is only marginally renormalized. We find that the scrambling rates act as a measure of the "degree of integrability" of each sector of the theory: the Lyapunov exponent for the boson $λ_L^{(B)} \sim \mathcal O(\sqrt{w}) \,k_B T/\hbar$ is significantly larger than the fermion one $λ_L^{(F)} \sim \mathcal O(w^2) \,k_B T/\hbar$, where $T$ is the temperature. Although the interaction strength in the theory is of order unity, the larger Lyapunov exponent is still parametrically smaller than the universal upper bound of $λ_L=2πk_B T/\hbar$. We also compute the spatial spread of chaos by the boson operator, whose low-energy propagator is highly non-local. We find that this non-locality leads to a scrambled region that grows exponentially fast, giving an infinite "butterfly velocity" of the chaos front, a result that has also been found in lattice models with long-range interactions.
description: 10+6 pages, 11 figures
Bagre pinnimaculatus
Creators: name: Alexandre P. Marceniuk
name: Naércio A. Menezes
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Siluriformes
Ariidae
Bagre
Bagre pinnimaculatus

description: Bagre pinnimaculatus (Steindachner, 1876)
? Galeichthys eydouxii Valenciennes in Cuvier & Valenciennes, 1840b: 43. Type locality: rio Guayaquil, Ecuador. Holotype: MNHN 1572.
Aelurichthys pinnimaculatus Steindachner, 1877: 565 [15], pl. 8. Type locality: Altata, Panama and western coast of Costa Rica. Syntypes: MCZ 4941, MCZ 23746-47, NMW 47895, NMW 47897-99, NMW 50577, USNM 123011; MCZ 23746, Panama.
Distribution: Western America.
Countries: Mexico, Guatemala, El Salvador, Nicaragua, Costa Rica, Panama, Colombia and Ecuador.
Habitat: Marine and brackish waters.
Maximum size: 500 mm TL.
Material examined: FMNH 62447 (5 al, 191-219 mm TL) (1 c&s), Panama, Panama Bay, offshore bet. Punta de Hicacal and rio Pasiga; USNM 286506 (2 al, 272-339 mm TL), Colombia.
description: Published as part of Alexandre P. Marceniuk & Naércio A. Menezes, 2007, Systematics of the family Ariidae (Ostariophysi, Siluriformes), with a redefinition of the genera., pp. 1-126 in Zootaxa 1416 on page 31