Pan-cancer analysis of whole genomes
Creators: name: Campbell, Peter J.
name: Getz, Gad
name: Korbel, Jan O.
name: Stuart, Joshua M.
name: Jennings, Jennifer L.
name: Stein, Lincoln D.
name: Perry, Marc D.
name: Nahal-Bose, Hardeep K.
name: Ouellette, B. F. Francis
name: Li, Constance H.
name: Rheinbay, Esther
name: Nielsen, G. Petur
name: Sgroi, Dennis C.
name: Wu, Chin-Lee
name: Faquin, William C.
name: Deshpande, Vikram
name: Boutros, Paul C.
name: Lazar, Alexander J.
name: Hoadley, Katherine A.
name: Louis, David N.
name: Dursi, L. Jonathan
name: Yung, Christina K.
name: Bailey, Matthew H.
name: Saksena, Gordon
name: Raine, Keiran M.
name: Buchhalter, Ivo
name: Kleinheinz, Kortine
name: Schlesner, Matthias
name: Zhang, Junjun
name: Wang, Wenyi
name: Wheeler, David A.
name: Ding, Li
name: Simpson, Jared T.
name: O’Connor, Brian D.
name: Yakneen, Sergei
name: Ellrott, Kyle
name: Miyoshi, Naoki
name: Butler, Adam P.
name: Royo, Romina
name: Shorser, Solomon I.
name: Vazquez, Miguel
name: Rausch, Tobias
name: Tiao, Grace
name: Waszak, Sebastian M.
name: Rodriguez-Martin, Bernardo
name: Shringarpure, Suyash
name: Wu, Dai-Ying
name: Demidov, German M.
name: Delaneau, Olivier
name: Hayashi, Shuto
name: Imoto, Seiya
name: Habermann, Nina
name: Segre, Ayellet V.
name: Garrison, Erik
name: Cafferkey, Andy
name: Alvarez, Eva G.
name: Heredia-Genestar, José María
name: Muyas, Francesc
name: Drechsel, Oliver
name: Bruzos, Alicia L.
name: Temes, Javier
name: Zamora, Jorge
name: Baez-Ortega, Adrian
name: Kim, Hyung-Lae
name: Mashl, R. Jay
name: Ye, Kai
name: DiBiase, Anthony
name: Huang, Kuan-Lin
name: Letunic, Ivica
name: McLellan, Michael D.
name: Newhouse, Steven J.
name: Shmaya, Tal
name: Kumar, Sushant
name: Wedge, David C.
name: Wright, Mark H.
name: Yellapantula, Venkata D.
name: Gerstein, Mark
name: Khurana, Ekta
name: Marques-Bonet, Tomas
name: Navarro, Arcadi
name: Bustamante, Carlos D.
name: Siebert, Reiner
name: Nakagawa, Hidewaki
name: Easton, Douglas F.
name: Ossowski, Stephan
name: Tubio, Jose M. C.
name: De La Vega, Francisco M.
name: Estivill, Xavier
name: Yuen, Denis
name: Mihaiescu, George L.
name: Omberg, Larsson
name: Ferretti, Vincent
name: Sabarinathan, Radhakrishnan
name: Pich, Oriol
name: Gonzalez-Perez, Abel
name: Taylor-Weiner, Amaro
name: Fittall, Matthew W.
name: Demeulemeester, Jonas
name: Tarabichi, Maxime
name: Roberts, Nicola D.
name: Van Loo, Peter
name: Cortés-Ciriano, Isidro
name: Urban, Lara
name: Park, Peter
name: Zhu, Bin
name: Pitkänen, Esa
name: Li, Yilong
name: Saini, Natalie
name: Klimczak, Leszek J.
name: Weischenfeldt, Joachim
name: Sidiropoulos, Nikos
name: Alexandrov, Ludmil B.
name: Rabionet, Raquel
name: Escaramis, Georgia
name: Bosio, Mattia
name: Holik, Aliaksei Z.
name: Susak, Hana
name: Prasad, Aparna
name: Erkek, Serap
name: Calabrese, Claudia
name: Raeder, Benjamin
name: Harrington, Eoghan
name: Mayes, Simon
name: Turner, Daniel
name: Juul, Sissel
name: Roberts, Steven A.
name: Song, Lei
name: Koster, Roelof
name: Mirabello, Lisa
name: Hua, Xing
name: Tanskanen, Tomas J.
name: Tojo, Marta
name: Chen, Jieming
name: Aaltonen, Lauri A.
name: Rätsch, Gunnar
name: Schwarz, Roland F.
name: Butte, Atul J.
name: Brazma, Alvis
name: Chanock, Stephen J.
name: Chatterjee, Nilanjan
name: Stegle, Oliver
name: Harismendy, Olivier
name: Bova, G. Steven
name: Gordenin, Dmitry A.
name: Haan, David
name: Sieverling, Lina
name: Feuerbach, Lars
name: Chalmers, Don
name: Joly, Yann
name: Knoppers, Bartha
name: Molnár-Gábor, Fruzsina
name: Phillips, Mark
name: Thorogood, Adrian
name: Townend, David
name: Goldman, Mary
name: Fonseca, Nuno A.
name: Xiang, Qian
name: Craft, Brian
name: Piñeiro-Yáñez, Elena
name: Muñoz, Alfonso
name: Petryszak, Robert
name: Füllgrabe, Anja
name: Al-Shahrour, Fatima
name: Keays, Maria
name: Haussler, David
name: Weinstein, John
name: Huber, Wolfgang
name: Valencia, Alfonso
name: Papatheodorou, Irene
name: Zhu, Jingchun
name: Fan, Yu
name: Torrents, David
name: Bieg, Matthias
name: Chen, Ken
name: Chong, Zechen
name: Cibulskis, Kristian
name: Eils, Roland
name: Fulton, Robert S.
name: Gelpi, Josep L.
name: Gonzalez, Santiago
name: Gut, Ivo G.
name: Hach, Faraz
name: Heinold, Michael
name: Hu, Taobo
name: Huang, Vincent
name: Hutter, Barbara
name: Jäger, Natalie
name: Jung, Jongsun
name: Kumar, Yogesh
name: Lalansingh, Christopher
name: Leshchiner, Ignaty
name: Livitz, Dimitri
name: Ma, Eric Z.
name: Maruvka, Yosef E.
name: Milovanovic, Ana
name: Nielsen, Morten Muhlig
name: Paramasivam, Nagarajan
name: Pedersen, Jakob Skou
name: Puiggròs, Montserrat
name: Sahinalp, S. Cenk
name: Sarrafi, Iman
name: Stewart, Chip
name: Stobbe, Miranda D.
name: Wala, Jeremiah A.
name: Wang, Jiayin
name: Wendl, Michael
name: Werner, Johannes
name: Wu, Zhenggang
name: Xue, Hong
name: Yamaguchi, Takafumi N.
name: Yellapantula, Venkata
name: Davis-Dusenbery, Brandi N.
name: Grossman, Robert L.
name: Kim, Youngwook
name: Heinold, Michael C.
name: Hinton, Jonathan
name: Jones, David R.
name: Menzies, Andrew
name: Stebbings, Lucy
name: Hess, Julian M.
name: Rosenberg, Mara
name: Dunford, Andrew J.
name: Gupta, Manaswi
name: Imielinski, Marcin
name: Meyerson, Matthew
name: Beroukhim, Rameen
name: Reimand, Jüri
name: Dhingra, Priyanka
name: Favero, Francesco
name: Dentro, Stefan
name: Wintersinger, Jeff
name: Rudneva, Vasilisa
name: Park, Ji Wan
name: Hong, Eun Pyo
name: Heo, Seong Gu
name: Kahles, André
name: Lehmann, Kjong-Van
name: Soulette, Cameron M.
name: Shiraishi, Yuichi
name: Liu, Fenglin
name: He, Yao
name: Demircioğlu, Deniz
name: Davidson, Natalie R.
name: Greger, Liliana
name: Li, Siliang
name: Liu, Dongbing
name: Stark, Stefan G.
name: Zhang, Fan
name: Amin, Samirkumar B.
name: Bailey, Peter
name: Chateigner, Aurélien
name: Frenkel-Morgenstern, Milana
name: Hou, Yong
name: Huska, Matthew R.
name: Kilpinen, Helena
name: Lamaze, Fabien C.
name: Li, Chang
name: Li, Xiaobo
name: Li, Xinyue
name: Liu, Xingmin
name: Marin, Maximillian G.
name: Markowski, Julia
name: Nandi, Tannistha
name: Ojesina, Akinyemi I.
name: Pan-Hammarström, Qiang
name: Park, Peter J.
name: Pedamallu, Chandra Sekhar
name: Su, Hong
name: Tan, Patrick
name: Teh, Bin Tean
name: Wang, Jian
name: Xiong, Heng
name: Ye, Chen
name: Yung, Christina
name: Zhang, Xiuqing
name: Zheng, Liangtao
name: Zhu, Shida
name: Awadalla, Philip
name: Creighton, Chad J.
name: Wu, Kui
name: Yang, Huanming
name: Göke, Jonathan
name: Zhang, Zemin
name: Brooks, Angela N.
name: Fittall, Matthew W
name: Martincorena, Iñigo
name: Rubio-Perez, Carlota
name: Juul, Malene
name: Schumacher, Steven
name: Shapira, Ofer
name: Tamborero, David
name: Mularoni, Loris
name: Hornshøj, Henrik
name: Deu-Pons, Jordi
name: Muiños, Ferran
name: Bertl, Johanna
name: Guo, Qianyun
name: Bazant, Wojciech
name: Barrera, Elisabet
name: Al-Sedairy, Sultan T.
name: Aretz, Axel
name: Bell, Cindy
name: Betancourt, Miguel
name: Buchholz, Christiane
name: Calvo, Fabien
name: Chomienne, Christine
name: Dunn, Michael
name: Edmonds, Stuart
name: Green, Eric
name: Gupta, Shailja
name: Hutter, Carolyn M.
name: Jegalian, Karine
name: Jones, Nic
name: Lu, Youyong
name: Nakagama, Hitoshi
name: Nettekoven, Gerd
name: Planko, Laura
name: Scott, David
name: Shibata, Tatsuhiro
name: Shimizu, Kiyo
name: Stratton, Michael R.
name: Yugawa, Takashi
name: Tortora, Giampaolo
name: VijayRaghavan, K.
name: Zenklusen, Jean C.
name: Knoppers, Bartha M.
name: Aminou, Brice
name: Bartolome, Javier
name: Boroevich, Keith A.
name: Boyce, Rich
name: Buchanan, Alex
name: Byrne, Niall J.
name: Chen, Zhaohong
name: Cho, Sunghoon
name: Choi, Wan
name: Clapham, Peter
name: Dow, Michelle T.
name: Dursi, Lewis Jonathan
name: Eils, Juergen
name: Farcas, Claudiu
name: Fayzullaev, Nodirjon
name: Flicek, Paul
name: Heath, Allison P.
name: Hofmann, Oliver
name: Hong, Jongwhi H.
name: Hudson, Thomas J.
name: Hübschmann, Daniel
name: Ivkovic, Sinisa
name: Jeon, Seung-Hyup
name: Jiao, Wei
name: Kabbe, Rolf
name: Kahles, Andre
name: Kerssemakers, Jules N. A.
name: Kim, Hyunghwan
name: Kim, Jihoon
name: Koscher, Michael
name: Koures, Antonios
name: Kovacevic, Milena
name: Lawerenz, Chris
name: Liu, Jia
name: Mijalkovic, Sanja
name: Mijalkovic-Lazic, Ana Mijalkovic
name: Miyano, Satoru
name: Nastic, Mia
name: Nicholson, Jonathan
name: Ocana, David
name: Ohi, Kazuhiro
name: Ohno-Machado, Lucila
name: Pihl, Todd D.
name: Prinz, Manuel
name: Radovic, Petar
name: Short, Charles
name: Sofia, Heidi J.
name: Spring, Jonathan
name: Struck, Adam J.
name: Tijanic, Nebojsa
name: Vicente, David
name: Wang, Zhining
name: Williams, Ashley
name: Woo, Youngchoon
name: Wright, Adam J.
name: Yang, Liming
name: Hamilton, Mark P.
name: Johnson, Todd A.
name: Kahraman, Abdullah
name: Kellis, Manolis
name: Polak, Paz
name: Sallari, Richard
name: Sinnott-Armstrong, Nasa
name: Von Mering, Christian
name: Beltran, Sergi
name: Gerhard, Daniela S.
name: Gut, Marta
name: Trotta, Jean-Rémi
name: Whalley, Justin P.
name: Niu, Beifang
name: Espiritu, Shadrielle M. G.
name: Gao, Shengjie
name: Huang, Yi
name: Lalansingh, Christopher M.
name: Teague, Jon W.
name: Wendl, Michael C.
name: Abascal, Federico
name: Bader, Gary D.
name: Bandopadhayay, Pratiti
name: Barenboim, Jonathan
name: Brunak, Søren
name: Carlevaro-Fita, Joana
name: Chakravarty, Dimple
name: Chan, Calvin Wing Yiu
name: Choi, Jung Kyoon
name: Diamanti, Klev
name: Fink, J. Lynn
name: Frigola, Joan
name: Gambacorti-Passerini, Carlo
name: Garsed, Dale W.
name: Haradhvala, Nicholas J.
name: Harmanci, Arif O.
name: Helmy, Mohamed
name: Herrmann, Carl
name: Hobolth, Asger
name: Hodzic, Ermin
name: Hong, Chen
name: Isaev, Keren
name: Izarzugaza, Jose M. G.
name: Johnson, Rory
name: Juul, Randi Istrup
name: Kim, Jaegil
name: Kim, Jong K.
name: Komorowski, Jan
name: Lanzós, Andrés
name: Larsson, Erik
name: Lee, Donghoon
name: Li, Shantao
name: Li, Xiaotong
name: Lin, Ziao
name: Liu, Eric Minwei
name: Lochovsky, Lucas
name: Lou, Shaoke
name: Madsen, Tobias
name: Marchal, Kathleen
name: Martinez-Fundichely, Alexander
name: McGillivray, Patrick D.
name: Meyerson, William
name: Paczkowska, Marta
name: Park, Keunchil
name: Park, Kiejung
name: Pons, Tirso
name: Pulido-Tamayo, Sergio
name: Reyes-Salazar, Iker
name: Reyna, Matthew A.
name: Rubin, Mark A.
name: Salichos, Leonidas
name: Sander, Chris
name: Schumacher, Steven E.
name: Shackleton, Mark
name: Shen, Ciyue
name: Shrestha, Raunak
name: Shuai, Shimin
name: Tsunoda, Tatsuhiko
name: Umer, Husen M.
name: Uusküla-Reimand, Liis
name: Verbeke, Lieven P. C.
name: Wadelius, Claes
name: Wadi, Lina
name: Warrell, Jonathan
name: Wu, Guanming
name: Yu, Jun
name: Zhang, Jing
name: Zhang, Xuanping
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name: Zhao, Zhongming
name: Zou, Lihua
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name: Raphael, Benjamin J.
name: Bailey, Peter J.
name: Craft, David
name: Goldman, Mary J.
name: Aburatani, Hiroyuki
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name: Dinh, Huy Q.
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name: Hoffmann, Steve
name: Imbusch, Charles David
name: Kretzmer, Helene
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name: Bowtell, David D. L.
name: Burns, Kathleen H.
name: Busanovich, John
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name: Dueso-Barroso, Ana
name: Edwards, Paul A.
name: Etemadmoghadam, Dariush
name: Haber, James E.
name: Jones, David T. W.
name: Ju, Young Seok
name: Kazanov, Marat D.
name: Koh, Youngil
name: Kumar, Kiran
name: Lee, Eunjung Alice
name: Lee, Jake June-Koo
name: Lynch, Andy G.
name: Macintyre, Geoff
name: Markowetz, Florian
name: Navarro, Fabio C. P.
name: Pearson, John V.
name: Rippe, Karsten
name: Scully, Ralph
name: Villasante, Izar
name: Waddell, Nicola
name: Yang, Lixing
name: Yao, Xiaotong
name: Yoon, Sung-Soo
name: Zhang, Cheng-Zhong
name: Bergstrom, Erik N.
name: Boot, Arnoud
name: Covington, Kyle
name: Fujimoto, Akihiro
name: Huang, Mi Ni
name: Islam, S. M. Ashiqul
name: McPherson, John R.
name: Morganella, Sandro
name: Mustonen, Ville
name: Ng, Alvin Wei Tian
name: Prokopec, Stephenie D.
name: Vázquez-García, Ignacio
name: Wu, Yang
name: Yousif, Fouad
name: Yu, Willie
name: Rozen, Steven G.
name: Rudneva, Vasilisa A.
name: Shringarpure, Suyash S.
name: Turner, Daniel J.
name: Xia, Tian
name: Atwal, Gurnit
name: Chang, David K.
name: Cooke, Susanna L.
name: Faltas, Bishoy M.
name: Haider, Syed
name: Kaiser, Vera B.
name: Karlić, Rosa
name: Kato, Mamoru
name: Kübler, Kirsten
name: Margolin, Adam
name: Martin, Sancha
name: Nik-Zainal, Serena
name: P’ng, Christine
name: Semple, Colin A.
name: Smith, Jaclyn
name: Sun, Ren X.
name: Thai, Kevin
name: Wright, Derek W.
name: Yuan, Ke
name: Biankin, Andrew V.
name: Garraway, Levi
name: Grimmond, Sean M.
name: Adams, David J.
name: Anur, Pavana
name: Cao, Shaolong
name: Christie, Elizabeth L.
name: Cmero, Marek
name: Cun, Yupeng
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name: Dentro, Stefan C.
name: Deshwar, Amit G.
name: Donmez, Nilgun
name: Drews, Ruben M.
name: Gerstung, Moritz
name: Ha, Gavin
name: Haase, Kerstin
name: Jerman, Lara
name: Ji, Yuan
name: Jolly, Clemency
name: Lee, Juhee
name: Lee-Six, Henry
name: Malikic, Salem
name: Mitchell, Thomas J.
name: Morris, Quaid D.
name: Oesper, Layla
name: Peifer, Martin
name: Peto, Myron
name: Rosebrock, Daniel
name: Rubanova, Yulia
name: Salcedo, Adriana
name: Sengupta, Subhajit
name: Shi, Ruian
name: Shin, Seung Jun
name: Spiro, Oliver
name: Vembu, Shankar
name: Wintersinger, Jeffrey A.
name: Yang, Tsun-Po
name: Yu, Kaixian
name: Zhu, Hongtu
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name: Weinstein, John N.
name: Chen, Yiwen
name: Fujita, Masashi
name: Han, Leng
name: Hasegawa, Takanori
name: Komura, Mitsuhiro
name: Li, Jun
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name: Shimizu, Eigo
name: Wang, Yumeng
name: Xu, Yanxun
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name: Yang, Fan
name: Yang, Yang
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name: Yuan, Yuan
name: Liang, Han
name: Alawi, Malik
name: Borozan, Ivan
name: Brewer, Daniel S.
name: Cooper, Colin S.
name: Desai, Nikita
name: Grundhoff, Adam
name: Iskar, Murat
name: Su, Xiaoping
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name: Mitchell, Chris
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name: Umbricht, Christopher
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Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article
article

description: Abstract: Cancer is driven by genetic change, and the advent of massively parallel sequencing has enabled systematic documentation of this variation at the whole-genome scale1–3. Here we report the integrative analysis of 2,658 whole-cancer genomes and their matching normal tissues across 38 tumour types from the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium of the International Cancer Genome Consortium (ICGC) and The Cancer Genome Atlas (TCGA). We describe the generation of the PCAWG resource, facilitated by international data sharing using compute clouds. On average, cancer genomes contained 4–5 driver mutations when combining coding and non-coding genomic elements; however, in around 5% of cases no drivers were identified, suggesting that cancer driver discovery is not yet complete. Chromothripsis, in which many clustered structural variants arise in a single catastrophic event, is frequently an early event in tumour evolution; in acral melanoma, for example, these events precede most somatic point mutations and affect several cancer-associated genes simultaneously. Cancers with abnormal telomere maintenance often originate from tissues with low replicative activity and show several mechanisms of preventing telomere attrition to critical levels. Common and rare germline variants affect patterns of somatic mutation, including point mutations, structural variants and somatic retrotransposition. A collection of papers from the PCAWG Consortium describes non-coding mutations that drive cancer beyond those in the TERT promoter4; identifies new signatures of mutational processes that cause base substitutions, small insertions and deletions and structural variation5, 6; analyses timings and patterns of tumour evolution7; describes the diverse transcriptional consequences of somatic mutation on splicing, expression levels, fusion genes and promoter activity8, 9; and evaluates a range of more-specialized features of cancer genomes8, 10–18.