cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Supersymmetry-based Approach to Quantum Particle Dynamics
Creators: name: Kim, Seok
name: Lee, Choonkyu
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We present the N=2 supersymmetric formulation for the classical and quantum dynamics of a nonrelativistic charged particle on a curved surface in the presence of a perpendicular magnetic field. For a particle moving on a constant-curvature surface in a constant magnetic field, our Hamiltonian possesses the shape-invariance property in addition. On the surface of a sphere and also on the hyperbolic plane, we exploit the supersymmetry and shape-invariance properties to obtain complete solutions to the corresponding quantum mechanical problems.
description: revtex, 24pages, no figure
Additional file 3: of Contrasting patterns of longitudinal population dynamics and antimicrobial resistance mechanisms in two priority bacterial pathogens over 7Â years in a single center
Creators: name: Ellington, Matthew
name: Heinz, Eva
name: Wailan, Alexander
name: Dorman, Matthew
name: Goffau, Marcus
name: Cain, Amy
name: Henson, Sonal
name: Gleadall, Nicholas
name: Boinett, Christine
name: Dougan, Gordon
name: Brown, Nicholas
name: Woodford, Neil
name: Parkhill, Julian
name: M. TĂśrĂśk
name: Peacock, Sharon
name: Thomson, Nicholas
Publisher: name: figshare
Year: 2019
Subjects: subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Review history. (DOCX 15 kb)
On the Nature of Charge Transport in Quantum-Cascade Lasers
Creators: name: Iotti, Rita Claudia
name: Rossi, Fausto
Publisher: name: arXiv
Year: 2001
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: The first global quantum simulation of semiconductor-based quantum-cascade lasers is presented. Our three-dimensional approach allows to study in a purely microscopic way the current-voltage characteristics of state-of-the-art unipolar nanostructures, and therefore to answer the long-standing controversial question: is charge transport in quantum-cascade lasers mainly coherent or incoherent? Our analysis shows that: (i) Quantum corrections to the semiclassical scenario are minor; (ii) Inclusion of carrier-phonon and carrier-carrier scattering gives excellent agreement with experimental results.
description: 4 pages, 7 Postscript figures. Phys. Rev. Lett. (in press)
Additional file 1 of An approximate point-based alternative for the estimation of variance under big BAF sampling
Creators: name: Lynch, Thomas B.
name: Gove, Jeffrey H.
name: Gregoire, Timothy G.
name: Ducey, Mark J.
Publisher: name: figshare
Year: 2021
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Additional file 1 Supplementary Material: An Approximate Point-Based Alternative for the Estimation of Variance under Big BAF Sampling
Additional file 1 of The treatment of Qibai Pingfei Capsule on chronic obstructive pulmonary disease may be mediated by Th17/Treg balance and gut-lung axis microbiota
Creators: name: Jia, Yu
name: He, Tiantian
name: Wu, Di
name: Tong, Jiabing
name: Zhu, Jie
name: Li, Zegeng
name: Dong, Jingcheng
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: Additional file 1: Raw data of UNIFI system about constituents of QBPF migrating to blood.
Itineration of the Internet over Nonequilibrium Stationary States in Tsallis Statistics
Creators: name: Abe, Sumiyoshi
name: Suzuki, Norikazu
Publisher: name: arXiv
Year: 2002
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: The cumulative probability distribution of sparseness time interval in the Internet is studied by the method of data analysis. Round-trip time between a local host and a destination host through ten odd routers is measured using the Ping Command, i.e., doing echo experiment. It is found that the data are well described by the q-exponential destributions, which maximize the Tsallis entropy indexed by q less or larger than unity. The network is observed to itinerate over a series of the nonequilibrium stationary states characterized by Tsallis statistics.
description: 15 pages, 5 figures
Decoherence of quantum states and its suppression in ensemble large-scale solid state NMR quantum computers
Creators: name: Kokin, A. A.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: It is discussed the decoherence problems in ensemble large-scale solid state NMR quantum computer based on the array of P donor atoms having nuclear spin I = 1/2. It is considered here, as main mechanisms of decoherence for low temperature (< 0.1 K), the adiabatic processes of random modulation of qubit resonance frequency determined by secular part of nuclear spin interaction with electron spin of the basic atoms, with impurity paramagnetic atoms and also with nuclear spins of impurity diamagnetic atoms. It was made estimations of allowed concentrations of magnetic impurities and of spin temperature whereby the required decoherence suppression is obtained. It is discussed the random phase error suppression in the ensemble quantum register basic states.
description: LaTeX 7 pages. Submitted to Proceedings of SPIE. International Symposium Quantum Informatics (QI-2002), October 2002, Zvenigorod, Russia
Additional file 23: of Exploration of tissue-specific gene expression patterns underlying timing of breeding in contrasting temperature environments in a song bird
Creators: name: Laine, Veronika
name: Verhagen, Irene
name: A. Mateman
name: Pijl, Agata
name: Williams, Tony
name: Gienapp, Phillip
name: Oers, Kees
name: Visser, Marcel
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Figure S6. Expression patterns of DEG clusters in hypothalamus time point-temperature interaction model. (PDF 144 kb)
Self-consistent Treatment of Copolymers with Arbitrary Sequences
Creators: name: Kuznetsov, Yu. A.
name: Timoshenko, E. G.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Quantitative Biology (q-bio)
subject: FOS: Physical sciences
subject: FOS: Biological sciences

description: Using the Gaussian Ansatz for the monomer-monomer correlation functions we derive a set of the self-consistent equations for determination of the conformational state in the bead-and-spring copolymer model. The latter is based on the Edwards type effective free energy functional with arbitrary two-body interaction matrix. The rate of conformational changes in kinetics may be expressed via the instantaneous gradients of the variational free energy functional in the space of the averaged dynamical variables. We study the equilibrium and kinetics for some periodic and random aperiodic amphiphilic sequences in infinitely diluted solution. Typical equilibrium phase diagrams are elucidated and the conformational structure of different states is discussed. The kinetics of compaction of an amphiphilic copolymer to the globular state proceeds through formation of locally frustrated non-equilibrium structures. This leads to a rather complicated multistep kinetic process. We observe that even a small modification in the primary sequence of a copolymer may significantly change its kinetic folding properties.
description: 16 pages, 25 PS figures
Rising from Ashes or Dying Flash? Mega Outburst of Small Comet 289P/Blanpain in 2013
Creators: name: Ye, Quanzhi
name: Clark, David L.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: Jupiter-family comet 289P/Blanpain was first discovered in 1819 and was then lost for $\sim200$ years, only to be rediscovered in 2003 as a small, weakly active comet. The comet is associated with the Phoenicids, an otherwise minor meteor shower that produced significant outbursts in 1956 and 2014. The shower points to the existence of significant mass-loss events of P/Blanpain in recent history. P/Blanpain was recovered during an apparent large outburst in 2013 July at an appreciable heliocentric distance of 3.9 au, with brightness increase of 9 mag, making it one of the largest comet outbursts ever observed. Here we present an analysis of archival data taken by several telescopes. We find that the 2013 outburst has produced $\sim10^{8}$ kg of dust, which accounts for a modest fraction ($\sim1\%$) of the mass of P/Blanpain's nucleus as measured in 2004. Based on analysis of long-term lightcurve and modeling of coma morphology, we conclude that the 2013 outburst was most likely driven by the crystallization of amorphous water ice triggered by a spin-up disruption of the nucleus. Dust dynamical model shows that a small fraction of the dust ejecta will reach the Earth in 2036 and 2041, but are only expected to produce minor enhancements to the Phoenicid meteor shower. The 2013 outburst of P/Blanpain, though remarkable for a comet at small sizes, does not necessary imply a catastrophic disruption of the nucleus. The upcoming close encounter of P/Blanpain in 2020 January will provide an opportunity to examine the current state of the comet.
description: ApJL in press
Ivalia laeta
Creators: name: Nadein, Konstantin S.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Ivalia
Ivalia laeta

description: Ivalia laeta (Samuelson)
 Amphimeloides laetus Samuelson, 1966: 442. Type locality: New Guinea: Salawaket Range.
Distribution. New Guinea.
description: Published as part of Nadein, Konstantin S., 2013, Ivalia Jacoby-a flea beetle genus new to Australia (Coleoptera: Chrysomelidae: Galerucinae), pp. 384-400 in Zootaxa 3669 (3) on page 397, DOI: 10.11646/zootaxa.3669.3.11, http://zenodo.org/record/5266762
Additional file 6 of Performance evaluation of pipelines for mapping, variant calling and interval padding, for the analysis of NGS germline panels
Creators: name: Zanti, Maria
name: Michailidou, Kyriaki
name: Loizidou, Maria A.
name: Machattou, Christina
name: Pirpa, Panagiota
name: Kyproula Christodoulou
name: Spyrou, George M.
name: Kyriacos Kyriacou
name: Hadjisavvas, Andreas
Publisher: name: figshare
Year: 2021
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: 60506 Virology

description: Additional file 6: Figure S2. Hierarchical clustering of the tools. The d, MCC, p, r and F1 values were used to perform hierarchical clustering analysis based on the Lance–Williams agglomerative hierarchical clustering algorithm, which at each stage recomputes dissimilarities between clusters.
Scinax catharinae
Creators: name: FAIVOVICH, JULIÁN
name: HADDAD, CÉLIO F. B.
name: GARCIA, PAULO C. A.
name: FROST, DARREL R.
name: CAMPBELL, JONATHAN A.
name: WHEELER, WARD C.
Publisher: name: Zenodo
Year: 2005
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Amphibia
Anura
Hylidae
Scinax
Scinax catharinae

description: Scinax catharinae Clade
DIAGNOSIS: This clade is diagnosed by 90 transformations in nuclear and mitochondrial proteins and ribosomal genes. See appendix 5 for a complete list of these molecular synapomorphies. Morphological synapomorphies suggested for this clade by Faivovich (2002) are absence of the anterior process of the suprascapula, internal vocal sac, distal division of the middle branch of the m. extensor digitorum comunis longus, and insertion of the medial side of this branch on the tendon of the m. extensor brevis medius digiti IV.
 COMMENTS: Regardless of problems imposed by the present results to interpretation of the possible synapomorphies of Scinax resulting from Faivovich’s (2002) analysis, the sparse available knowledge on the taxonomic distribution of the transformations supporting the monophyly of the very distinctive S. catharinae clade suggests that most of them still hold in the present analysis. An exception is the m. depressor mandibulae without an origin from the dorsal fascia at the level of the m. dorsalis scapulae, which also occurs in Hyla uruguaya, rendering its optimization ambiguous in our analysis.
description: Published as part of FAIVOVICH, JULIÁN, HADDAD, CÉLIO F. B., GARCIA, PAULO C. A., FROST, DARREL R., CAMPBELL, JONATHAN A. & WHEELER, WARD C., 2005, Systematic Review Of The Frog Family Hylidae, With Special Reference To Hylinae: Phylogenetic Analysis And Taxonomic Revision, pp. 1-240 in Bulletin of the American Museum of Natural History 2005 (294) on page 95, DOI: 10.1206/0003-0090(2005)294[0001:SROTFF]2.0.CO;2, http://zenodo.org/record/5363218
Lagrangian and Hamiltonian formulations of higher order Chern-Simons theories
Creators: name: Kumar, Sarmishtha
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We consider models involving the higher (third) derivative extension of the abelian Chern-Simons (CS) topological term in D=2+1 dimensions. The polarisation vectors in these models reveal an identical structure with the corresponding expressions for usual models which contain, at most, quadratic structures. We also investigate the Hamiltonian structure of these models and show how Wigner's little group acts as gauge generator.
description: 13 pages, Latex
Additional file 21: of Exploration of tissue-specific gene expression patterns underlying timing of breeding in contrasting temperature environments in a song bird
Creators: name: Laine, Veronika
name: Verhagen, Irene
name: A. Mateman
name: Pijl, Agata
name: Williams, Tony
name: Gienapp, Phillip
name: Oers, Kees
name: Visser, Marcel
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Computational Biology

description: Figure S4. Volcano plots of all the transcripts analysed in ovary RNA-seq in six different models. Genes differentially expressed with p 0.05 after correcting for false discovery rate are in black. (PDF 20 kb)
Product differentiation and brand competition in the Italian breakfast cereal market: a distance metric approach
Creators: name: Sckokai, Paolo
name: Varacca, Alessandro
name: Sckokai, Paolo
name: Varacca, Alessandro
Publisher: name: Unknown
Year: 2012
Subjects: Industrial Organization

description: This article employs a nation-wide sample of supermarket scanner data to study product and brand competition in the Italian breakfast cereal market. An Almost Ideal Demand System (AIDS) modelled to include Distance Metrics (DMs) and consistent with the methodology proposed by Pinske, Slade and Brett (2002), is estimated to study demand responses, substitution patterns, own-price and cross-price elasticities. Estimation results indicate a certain level of brand loyalty and opposite attitudes towards product type. Elasticities point out the presence of patterns of substitution within products sharing the same brand and similar nutritional characteristics.
Ivalia lescheni Nadein 2013, sp. nov.
Creators: name: Nadein, Konstantin S.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Ivalia
Ivalia lescheni

description: Ivalia lescheni Nadein, sp. nov.
Type locality: Australia: Queensland: Lamington National Park.
Distribution. Australia (Queensland and New South Wales).
description: Published as part of Nadein, Konstantin S., 2013, Ivalia Jacoby-a flea beetle genus new to Australia (Coleoptera: Chrysomelidae: Galerucinae), pp. 384-400 in Zootaxa 3669 (3) on page 397, DOI: 10.11646/zootaxa.3669.3.11, http://zenodo.org/record/5266762
$3d$ One-form Mixed Anomaly and Entanglement Entropy
Creators: name: Zhou, Yang
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We study mixed anomaly between $G_1$ and $G_2$ of one-form finite symmetry $G_1\times G_2$ in $3d$ Chern-Simons theories. We assign a quantum entanglement structure to two linked $G$-symmetry lines (Wilson loops) and compute the entanglement entropy $S[G]$. We find a measure of the mixed anomaly by computing $S[G_1\times G_2]-S[G_1]-S[G_2]$.
description: 27+1 pages
Warped diffusive radio halo around the quiescent spiral edge-on galaxy NGC 4565
Creators: name: Heesen, V.
name: Whitler, L.
name: Schmidt, P.
name: Miskolczi, A.
name: Sridhar, S. S.
name: Horellou, C.
name: Beck, R.
name: Gürkan, G.
name: Scannapieco, E.
name: Brüggen, M.
name: Heald, G. H.
name: Krause, M.
name: Paladino, R.
name: Nikiel-Wroczyński, B.
name: Dettmar, R. -J.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Cosmic rays play a pivotal role in launching galactic winds, particularly in quiescently star-forming galaxies where the hot gas alone is not sufficient to drive a wind. Except for the Milky Way, not much is known about the transport of cosmic rays in galaxies. In this Letter, we present low-frequency observations of the nearby edge-on spiral galaxy NGC 4565 using the LOw-Frequency ARray (LOFAR). With our deep 144-MHz observations, we obtain a clean estimate of the emission originating from old cosmic-ray electrons (CRe), which is almost free from contamination by thermal emission. We measured vertical profiles of the non-thermal radio continuum emission that we fitted with Gaussian and exponential functions. The different profile shapes correspond to 1D cosmic-ray transport models of pure diffusion and advection, respectively. We detect a warp in the radio continuum that is reminiscent of the previously known HI warp. Because the warp is not seen at GHz-frequencies in the radio continuum, its minimum age must be about 100 Myr. The warp also explains the slight flaring of the thick radio disc that can otherwise be well described by a Gaussian profile with an FWHM of 65 arcsec (3.7 kpc). The diffusive radio halo together with the extra-planar X-ray emission may be remnants of enhanced star-forming activity in the past where the galaxy had a galactic wind, as GHz-observations indicate only a weak outflow in the last 40 Myr. NGC 4565 could be in transition from an outflow- to an inflow-dominated phase.
description: 5 pages, 4 figures, 2 tables; A\&A Letters accepted; appendix with cosmic-ray transport models
Ivalia loebli
Creators: name: Nadein, Konstantin S.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Ivalia
Ivalia loebli

description: Ivalia loebli (Döberl)
 Taizonia loebli Döberl, 1991: 633. Type locality: Nepal.
Distribution. Nepal.
description: Published as part of Nadein, Konstantin S., 2013, Ivalia Jacoby-a flea beetle genus new to Australia (Coleoptera: Chrysomelidae: Galerucinae), pp. 384-400 in Zootaxa 3669 (3) on page 397, DOI: 10.11646/zootaxa.3669.3.11, http://zenodo.org/record/5266762
Additional file 1 of Compartmental structures used in modeling COVID-19: a scoping review
Creators: name: Kong, Lingcai
name: Duan, Mengwei
name: Shi, Jin
name: Hong, Jie
name: Chang, Zhaorui
name: Zhang, Zhijie
Publisher: name: figshare
Year: 2022
Subjects: Medicine
Biotechnology
Biological Sciences not elsewhere classified
Information Systems not elsewhere classified
Mathematical Sciences not elsewhere classified
Cancer
Science Policy

description: Additional file 1. Expanded compartmental structures based on SEIR according to virus characteristics of COVID-19.
Machine-Assisted Map Editing
Creators: name: Bastani, Favyen
name: He, Songtao
name: Abbar, Sofiane
name: Alizadeh, Mohammad
name: Balakrishnan, Hari
name: Chawla, Sanjay
name: Madden, Sam
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: Mapping road networks today is labor-intensive. As a result, road maps have poor coverage outside urban centers in many countries. Systems to automatically infer road network graphs from aerial imagery and GPS trajectories have been proposed to improve coverage of road maps. However, because of high error rates, these systems have not been adopted by mapping communities. We propose machine-assisted map editing, where automatic map inference is integrated into existing, human-centric map editing workflows. To realize this, we build Machine-Assisted iD (MAiD), where we extend the web-based OpenStreetMap editor, iD, with machine-assistance functionality. We complement MAiD with a novel approach for inferring road topology from aerial imagery that combines the speed of prior segmentation approaches with the accuracy of prior iterative graph construction methods. We design MAiD to tackle the addition of major, arterial roads in regions where existing maps have poor coverage, and the incremental improvement of coverage in regions where major roads are already mapped. We conduct two user studies and find that, when participants are given a fixed time to map roads, they are able to add as much as 3.5x more roads with MAiD.
Scinax perpusillus
Creators: name: FAIVOVICH, JULIÁN
name: HADDAD, CÉLIO F. B.
name: GARCIA, PAULO C. A.
name: FROST, DARREL R.
name: CAMPBELL, JONATHAN A.
name: WHEELER, WARD C.
Publisher: name: Zenodo
Year: 2005
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Amphibia
Anura
Hylidae
Scinax
Scinax perpusillus

description: Scinax perpusillus Group
DIAGNOSIS: Presumed synapomorphies of this group are the oviposition in bromeliads and the extreme reduction of webbing between toes II and III (Peixoto, 1987; Faivovich, 2002).
 COMMENTS: The monophyly of this group was not tested by Faivovich (2002) because only one species of the group was available for his analysis, where it obtained as the sister taxon of all exemplars of the S. catharinae clade. For these two reasons, we continue recognizing this group until its monophyly is rigorously tested.
 CONTENTS: Seven species. Scinax alcatraz (B. Lutz, 1973); Scinax arduous Peixoto, 2002; Scinax atratus (Peixoto, 1989); Scinax littoreus (Peixoto, 1988); Scinax melloi (Peixoto, 1989); Scinax perpusillus (A. Lutz and B. Lutz, 1939); Scinax v ­signatus (B. Lutz, 1968).
description: Published as part of FAIVOVICH, JULIÁN, HADDAD, CÉLIO F. B., GARCIA, PAULO C. A., FROST, DARREL R., CAMPBELL, JONATHAN A. & WHEELER, WARD C., 2005, Systematic Review Of The Frog Family Hylidae, With Special Reference To Hylinae: Phylogenetic Analysis And Taxonomic Revision, pp. 1-240 in Bulletin of the American Museum of Natural History 2005 (294) on page 96, DOI: 10.1206/0003-0090(2005)294[0001:SROTFF]2.0.CO;2, http://zenodo.org/record/5363218
Additional file 7 of Performance evaluation of pipelines for mapping, variant calling and interval padding, for the analysis of NGS germline panels
Creators: name: Zanti, Maria
name: Michailidou, Kyriaki
name: Loizidou, Maria A.
name: Machattou, Christina
name: Pirpa, Panagiota
name: Kyproula Christodoulou
name: Spyrou, George M.
name: Kyriacos Kyriacou
name: Hadjisavvas, Andreas
Publisher: name: figshare
Year: 2021
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: 60506 Virology

description: Additional file 7: Figure S3. Box plot of Matthew Correlation coefficient (MCC) comparisons per alignment, variant calling or padding method. Each dot represents one observation and horizontal bold lines denote median MCC values. Boxes extend from the 25th to the 75th percentile of each group’s distribution of values. Vertical extending lines (whiskers) denote the upper and lower adjacent values. Statistical analyses were performed using the non-parametric Kruskal-Wallis or one-way ANOVA tests.
Time evolution of two harmonic oscillators with cross-Kerr interactions
Creators: name: Bruschi, David Edward
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We study the time evolution of two coupled quantum harmonic oscillators interacting through nonlinear optomechanical-like Hamiltonians that include cross-Kerr interactions. We employ techniques developed to decouple the time-evolution operator and obtain the analytical solution for the time evolution of the system. We apply these results to obtain explicit expressions of a few quantities of interest. Our results do not require approximations and therefore allow to study the nature and implications of the full nonlinearity of the system. Potential applications and extensions to optomechanics are also discussed.
description: 10 pages, no figures
A spatial analysis of participation in RDP measures: a case study in Emilia Romagna Region
Creators: name: Bartolini, Fabio
name: Raggi, Meri
name: Viaggi, Davide
name: Bartolini, Fabio
name: Raggi, Meri
name: Viaggi, Davide
Publisher: name: Unknown
Year: 2012
Subjects: subject: Community/Rural/Urban Development
subject: rural development measure
subject: farm modernisation
subject: spatial econometrics
subject: participation

description: A large body of literature has highlighted and analysed the issues which affect the quality and the reliability of evaluation results of the RDPs measure. In addition to weaknesses in the specification of objectives, measurement of the additionality, several authors have pointed-out a lack in evaluation of the cross-effects across space of the measure. The objective of this contribution is to develop a spatial analysis of the participation rate in the measure 121, highlighting, as a determinant, the effect of the set of priorities established by the local administration. The analysis is realised by two steps: the first is the realisation of an Exploratory Spatial Description Analysis (ESDA) of the participation rate in the Emilia Romagna Municipalities and the second is the development of a spatial econometric model of the participation rate in measure 121. Results highlight the relevance of the spatial analysis in improving the predictability of the participation to rural development measures. In particular they show a positive effect of the neighbouring and of the spatial location in the explanation of the participation rate; the results also show the effect of the priority mechanism implemented by each province in determining participation.
AI-Driven Multi-Sensory Brainwave Synchronization for Human-Computer Interfaces and Neural Communication
Creators: name: Hilmir Frímann Halldórsson
name: ChatGPT AI
name: Roary cat
Publisher: name: Zenodo
Year: 2025

description: This research presents an advanced AI-driven brainwave synchronization system capable of multisensory integration, cross-species communication, and real-time neural interface development. Through extensive testing of frequency variations and structured energy flow, we demonstrate a self-correcting neural model resistant to disturbances. This system enables potential breakthroughs in AI-assisted medical technologies, human-computer interaction, and cognitive augmentation.

 

Python Code Included, at the bottom of research paper.
Anatomically-Informed Multiple Linear Assignment Problems for White Matter Bundle Segmentation
Creators: name: Bertò, Giulia
name: Avesani, Paolo
name: Pestilli, Franco
name: Bullock, Daniel
name: Caron, Bradley
name: Olivetti, Emanuele
Publisher: name: arXiv
Year: 2019
Subjects: subject: Image and Video Processing (eess.IV)
subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Computer and information sciences

description: Segmenting white matter bundles from human tractograms is a task of interest for several applications. Current methods for bundle segmentation consider either only prior knowledge about the relative anatomical position of a bundle, or only its geometrical properties. Our aim is to improve the results of segmentation by proposing a method that takes into account information about both the underlying anatomy and the geometry of bundles at the same time. To achieve this goal, we extend a state-of-the-art example-based method based on the Linear Assignment Problem (LAP) by including prior anatomical information within the optimization process. The proposed method shows a significant improvement with respect to the original method, in particular on small bundles.
Nature of vibrational eigenmodes in topologically disordered solids
Creators: name: Simdyankin, S. I.
name: Taraskin, S. N.
name: Elenius, M.
name: Elliott, S. R.
name: Dzugutov, M.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: We use a local projectional analysis method to investigate the effect of topological disorder on the vibrational dynamics in a model glass simulated by molecular dynamics. Evidence is presented that the vibrational eigenmodes in the glass are generically related to the corresponding eigenmodes of its crystalline counterpart via disorder-induced level-repelling and hybridization effects. It is argued that the effect of topological disorder in the glass on the dynamical matrix can be simulated by introducing positional disorder in a crystalline counterpart.
description: 7 pages, 6 figures, PRB, to be published
Ivalia maculata
Creators: name: Nadein, Konstantin S.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Ivalia
Ivalia maculata

description: Ivalia maculata (Gressit & Kimoto)
 Taizonia maculata Gressitt & Kimoto, 1963: 835. Type locality: China: Fukien Prov.
Distribution. China.
description: Published as part of Nadein, Konstantin S., 2013, Ivalia Jacoby-a flea beetle genus new to Australia (Coleoptera: Chrysomelidae: Galerucinae), pp. 384-400 in Zootaxa 3669 (3) on page 397, DOI: 10.11646/zootaxa.3669.3.11, http://zenodo.org/record/5266762
Additional file 8 of Performance evaluation of pipelines for mapping, variant calling and interval padding, for the analysis of NGS germline panels
Creators: name: Zanti, Maria
name: Michailidou, Kyriaki
name: Loizidou, Maria A.
name: Machattou, Christina
name: Pirpa, Panagiota
name: Kyproula Christodoulou
name: Spyrou, George M.
name: Kyriacos Kyriacou
name: Hadjisavvas, Andreas
Publisher: name: figshare
Year: 2021
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: 60506 Virology

description: Additional file 8: Figure S4. Box plot comparisons of False Positive Rates (FPR). Only statistically significant differences are shown. Each dot represents one observation and horizontal bold lines denote median FPR values. Boxes extend from the 25th to the 75th percentile of each group’s distribution of values. Vertical extending lines (whiskers) denote the upper and lower adjacent values. Statistical analysis was performed using the non-parametric Kruskal-–Wallis test.
Domino successive-deviation ghost imaging
Creators: name: Li, Ya-Xin
name: Yu, Wen-Kai
name: Wang, Shuo-Fei
Publisher: name: arXiv
Year: 2019
Subjects: subject: Image and Video Processing (eess.IV)
subject: Optics (physics.optics)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Physical sciences

description: Traditional ghost imaging acquires images via the correlation of the intensity fluctuations of reference patterns and bucket values, and can even generate positive-negative images by conditionally averaging partial patterns. Here, we propose a domino successive-deviation ghost imaging method, which owns a good image quality comparable to that of differential ghost imaging with real-time fast computation, and a better robustness in practical scenarios where measurement noise and the instability of illuminating source coexists. Furthermore, it happens to generate real-time positive and negative images, giving a new insight into physical essence of positive-negative ghost image phenomenon. Both simulation and experimental results have demonstrated the feasibility of our approach. Therefore, this work complements the theory of ghost imaging and opens a door to practical applications of real-time single-pixel imaging.
description: 11 pages, 5 figures
On the nature of antiferromagnetism in the CO_2 planes of oxide superconductors
Creators: name: Friedel, J.
name: Kohmoto, M.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: Recent results on electrons and holes doped CuO 2 planes confirm the marked covalency of CuO bonding, suggesting a band picture of long and short range antiferromagnetism. The maxima of superconductive T c versus doping can be related to the crossing by the Fermi level of the edges of the pseudogap due to antiferromagnetic short range order (bonding edge for holes doping, antibonding one for electrons doping). The symmetry of the superconductive gap can be related to the Bragg scattering of electronic Bloch states near the edges of the AF pseudogap. Assuming a standard phonon coupling, one then predicts for commensurate AF a pure d symmetry of the superconductive gap for underdoped samples and d symmetry plus an ip contribution increasing linearly with overdoping. This seems in agreement with recent measurements of gap symmetry for YBCO, but should be more fully tested, especially for electron doped samples. The simple band approximation used here could no doubt be made more realistic by a specific inclusion of electron correlations and by a better description of AF short range order. Uncommensurate AF, as in LSCO, is not considered here.
Computation of intrinsic spin Hall conductivities from first principles using maximally-localized Wannier functions
Creators: name: Ryoo, Ji Hoon
name: Park, Cheol-Hwan
name: Souza, Ivo
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We present a method to compute the intrinsic spin Hall conductivity from first principles using an interpolation scheme based on maximally-localized Wannier functions. After obtaining the relevant matrix elements among the ab initio Bloch states calculated on a coarse k-point mesh, we Fourier transform them to find the corresponding matrix elements between Wannier states. We then perform an inverse Fourier transform to interpolate the velocity and spin-current matrix elements onto a dense k-point mesh, and use them to evaluate the spin Hall conductivity as a Brillouin-zone integral. This strategy has a much lower computational cost than a direct ab initio calculation, without sacrificing the accuracy. We demonstrate that the spin Hall conductivities of platinum and doped gallium arsenide, computed with our interpolation scheme as a function of the Fermi energy, are in good agreement with those obtained in previous first-principles studies. We also discuss certain approximations that can be made, in the spirit of the tight-binding method, to simplify the calculation of the velocity and spin-current matrix elements in the Wannier representation.
description: 13 pages, 6 figures
The generalized Fenyes-Nelson model for free scalar field theory
Creators: name: Davidson, Mark
Publisher: name: arXiv
Year: 2002
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The generalized Fenyes--Nelson model of quantum mechanics is applied to the free scalar field. The resulting Markov field is equivalent to the Euclidean Markov field with the times scaled by a common factor which depends on the diffusion parameter. This result is consistent between Guerra's earlier work on stochastic quantization of scalar fields. It suggests a deep connection between Euclidean field theory and the stochastic interpretation of quantum mechanics. The question of Lorentz covariance is also discussed.
description: 6 pages
Classification of rural areas in Europe using social sustainability indicators
Creators: name: Chatzinikolaou, Parthena
name: Manos, Basil D.
name: Bournaris, Thomas
name: Chatzinikolaou, Parthena
name: Manos, Basil D.
name: Bournaris, Thomas
Publisher: name: Unknown
Year: 2012
Subjects: subject: Community/Rural/Urban Development
subject: ranking
subject: rural areas
subject: indicators
subject: multicriteria analysis
subject: social sustainability

description: Social sustainability is “one of the three legs of the sustainability stool” (the other two are environmental and economic. There is limited literature that focuses on social sustainability to the extent that a comprehensive study of this concept is still missing. As a result, there have been very few attempts to define social sustainability as an independent dimension of sustainable development. Social sustainability is related to social capital, social inclusion, social exclusion and social cohesion in rural economies, terms that are measured by relevant social sustainability indicators. This paper aims to measure these indicators and to compare them. In order to measure these indicators, a household survey carried out in the context of the research project CAP-IRE. This survey included eleven case study areas in nine case study areas of the European Union. From the results of this survey we measured a set of economic and social sustainability indicators. We have selected the main social sustainability indicators on which we based on to proceed to the ranking of the eleven European rural areas.
Additional file 9 of Performance evaluation of pipelines for mapping, variant calling and interval padding, for the analysis of NGS germline panels
Creators: name: Zanti, Maria
name: Michailidou, Kyriaki
name: Loizidou, Maria A.
name: Machattou, Christina
name: Pirpa, Panagiota
name: Kyproula Christodoulou
name: Spyrou, George M.
name: Kyriacos Kyriacou
name: Hadjisavvas, Andreas
Publisher: name: figshare
Year: 2021
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: 60506 Virology

description: Additional file 9. Detailed commands and parameters used for data pre-processing, sequence alignment, post-alignment processing and variant discovery.
Photoemission spectra of LaMnO3 controlled by orbital excitations
Creators: name: Brink, Jeroen van den
name: Horsch, Peter
name: Oles, Andrzej M.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We investigate the spectral function of a hole moving in the orbital-ordered ferromagnetic planes of LaMnO$_3$, and show that it depends critically on the type of orbital ordering. While the hole does not couple to the spin excitations, it interacts strongly with the excitations of $e_g$ orbitals (orbitons), leading to new type of quasiparticles with a dispersion on the orbiton energy scale and with strongly enhanced mass and reduced weight. Therefore we predict a large redistribution of spectral weight with respect to the bands found in local density approximation (LDA) or in LDA+U.
description: 4 pages, 4 figures, 3 figures embedded, figure 3 corrected
Ivalia martensi
Creators: name: Nadein, Konstantin S.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Ivalia
Ivalia martensi

description: Ivalia martensi (Medvedev)
 Schereria martensi Medvedev, 1984: 61. Type locality: Nepal: Kaski Dist.
 Taizonia martensi (Medvedev, 1984): Gruev & Askevold, 1988.
Distribution. Nepal.
description: Published as part of Nadein, Konstantin S., 2013, Ivalia Jacoby-a flea beetle genus new to Australia (Coleoptera: Chrysomelidae: Galerucinae), pp. 384-400 in Zootaxa 3669 (3) on page 397, DOI: 10.11646/zootaxa.3669.3.11, http://zenodo.org/record/5266762
Scinax ruber
Creators: name: FAIVOVICH, JULIÁN
name: HADDAD, CÉLIO F. B.
name: GARCIA, PAULO C. A.
name: FROST, DARREL R.
name: CAMPBELL, JONATHAN A.
name: WHEELER, WARD C.
Publisher: name: Zenodo
Year: 2005
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Amphibia
Anura
Hylidae
Scinax
Scinax ruber

description: Scinax ruber Clade
DIAGNOSIS: This clade is supported by 53 transformations in nuclear and mitochondrial protein and ribosomal genes. See appendix 5 for a complete list of these molecular synapomorphies. A morphological synapomorphy suggested for this clade by Faivovich (2002) is the proctodeal tube positioned above the margin of the lower fin.
 COMMENTS: Faivovich (2002) was skeptical about the monophyly of the S. ruber clade; however, the present analysis recovers it as monophyletic, with a considerable number of transformations supporting its monophyly.
 As in the case of several of the synapomorphies suggested by Faivovich’s (2002) analysis for Scinax, we are unsure as to whether the suggested morphological synapomorphies are optimized identically in our analysis. In particular, we do not know the taxonomic distribution within Dendropsophini for two other synapomorphies proposed for this clade (Faivovich, 2002): the arytenoids with a dorsal prominence developed over the pharyngeal margin, and absence of the lateral m. extensor brevis distalis digiti V (pes). Preliminary observation on the larvae of some species of Sphaenorhynchus (Sphaenorhynchus bromelicola, S. orophilus, S. pauloalvini, and S. prasinus; Faivovich, personal obs.) indicate that their proctodeal tubes are attached to the free margin of the lower fin, similar to the S. catharinae clade, instead of having the characteristic position seen in larvae of the S. ruber clade.
 Scinax megapodius and S. trachythorax are considered here to be junior synonyms of S. fuscovarius for reasons discussed in appendix 4. There are two species, Hyla dolloi and H. karenanneae, that upon examination of their type series we consider to be species of Scinax (see appendix 4 for further comments on them).
CONTENTS: Fifty­six species. Eleven assigned to two groups, 43 unassigned to any group.
description: Published as part of FAIVOVICH, JULIÁN, HADDAD, CÉLIO F. B., GARCIA, PAULO C. A., FROST, DARREL R., CAMPBELL, JONATHAN A. & WHEELER, WARD C., 2005, Systematic Review Of The Frog Family Hylidae, With Special Reference To Hylinae: Phylogenetic Analysis And Taxonomic Revision, pp. 1-240 in Bulletin of the American Museum of Natural History 2005 (294) on page 96, DOI: 10.1206/0003-0090(2005)294[0001:SROTFF]2.0.CO;2, http://zenodo.org/record/5363218
Trans-Planckian Physics and the Spectrum of Fluctuations in a Bouncing Universe
Creators: name: Brandenberger, Robert H
name: Joras, Sergio E.
name: Martin, Jerome
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In this paper, we calculate the spectrum of scalar field fluctuations in a bouncing, asymptotically flat Universe, and investigate the dependence of the result on changes in the physics on length scales shorter than the Planck length which are introduced via modifications of the dispersion relation. In this model, there are no ambiguities concerning the choice of the initial vacuum state. We study an example in which the final spectrum of fluctuations depends sensitively on the modifications of the dispersion relation without needing to invoke complex frequencies. Changes in the amplitude and in the spectral index are possible, in addition to modulations of the spectrum. This strengthens the conclusions of previous work in which the spectrum of cosmological perturbations in expanding inflationary cosmologies was studied, and it was found that, for dispersion relations for which the evolution is not adiabatic, the spectrum changes from the standard prediction of scale-invariance.
description: 10 pages, 6 figures, RevTeX4. Analytical determination of the spectrum, corrected some typos, conclusions unchanged