cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Catenulopsora praelonga Buritica
Creators: name: Junior, Alcindo Da Silva Martins
name: Gomes, Paulo Weslem Portal
name: Sakuragui, Cássia Mônica
name: Junior, Aníbal Alves De Carvalho
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Fungi
Basidiomycota
Pucciniomycetes
Pucciniales
Phakopsoraceae
Catenulopsora
Catenulopsora praelonga

description: Catenulopsora praelonga (Speg.) Buriticá, Revista de la Academia Colombiana de Ciencias Exactas, Fisicas y  Naturales 19: 465.199 5. (?/?,IIpe/III).
 BASIONYM— Rostrupia praelonga Speg., Contr. Estud. Fl. Sierra Ventana 1: 83. 1896.
 Type on Pavonia polymorpha A. St. -Hil., Malvaceae, Sierra Ventana, Cordo, Argentina, s.d., s.loc., s.col.
 SPECIMENS EXAMINED— BRAZIL, RIO DE JANEIRO, Itatiaia, Parque Nacional de Itatiaia, on Malvaceae – Pavonia communis A.St. -Hil., 10.XII.2015, II, A. Martins Jr, A.A. Carvalho Junior & A. Riguetti 138/15 (RB 756976); 20.III.2017, II, III, A. Martins Junior & A.A. Carvalho Junior 24/17 (RB 757013); on Malvaceae – Callianthe bedfordiana (Hook.) Donnell, 25/17 (RB 757127); 21.III.2017, 46/17 (RB757044).
 DESCRIPTION AND ILLUSTRATION: Hennen et al. (2005) and Salazar-Yepes & Carvalho Jr (2010).
description: Published as part of Junior, Alcindo Da Silva Martins, Gomes, Paulo Weslem Portal, Sakuragui, Cássia Mônica & Junior, Aníbal Alves De Carvalho, 2022, Contributions to the knowledge and distribution of Pucciniales (rust fungi) in three Brazilian biomes, pp. 79-117 in Phytotaxa 577 (1) on page 94, DOI: 10.11646/phytotaxa.577.1.4, http://zenodo.org/record/7517579
Additional file 3 of Alignment between the patient’s cancer worry and the GP’s cancer suspicion and the association with the interval between first symptom presentation and referral: a cross-sectional study in Denmark
Creators: name: Virgilsen, Line Flytkjær
name: Pedersen, Anette Fischer
name: Vedsted, Peter
name: Petersen, Gitte Stentebjerg
name: Jensen, Henry
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: Hematology
subject: 60506 Virology

description: Additional file 3 Adjusted* prevalence rate ratio (PRR) of having long PCI according to the alignment between patient (PT) and general practitioner (GP) in the first clinical encounter and patient characteristics stratified on cancer type (n = 3333).
Additional file 2 of Alignment between the patient’s cancer worry and the GP’s cancer suspicion and the association with the interval between first symptom presentation and referral: a cross-sectional study in Denmark
Creators: name: Virgilsen, Line Flytkjær
name: Pedersen, Anette Fischer
name: Vedsted, Peter
name: Petersen, Gitte Stentebjerg
name: Jensen, Henry
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: Hematology
subject: 60506 Virology

description: Additional file 2 Prevalence rate ratio (PRR) of having long PCI according to the alignment between patient (PT) and general practitioner (GP) at the first clinical encounter and patient characteristics excluding gender-specific cancer types (n = 1639).
Additional file 1 of Alignment between the patient’s cancer worry and the GP’s cancer suspicion and the association with the interval between first symptom presentation and referral: a cross-sectional study in Denmark
Creators: name: Virgilsen, Line Flytkjær
name: Pedersen, Anette Fischer
name: Vedsted, Peter
name: Petersen, Gitte Stentebjerg
name: Jensen, Henry
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: Hematology
subject: 60506 Virology

description: Additional file 1 : Table 1: Categorisation of cancer types according to how difficult they are to diagnose clinically, based upon number of contacts in primary care before diagnosis in England [13, 28–30].
SOME ASPECTS OF TEACHING MICROBIOLOGY
Creators: name: Mukhiddinova, Nilyufar
Publisher: name: Zenodo
Year: 2024

description: The artіcle dіscusses some aspects of teachіng mіcrobіology at a medіcal unіversіty, focusіng on the іmplementatіon of a systematіc approach іn the educatіon system, the essence of whіch іs to consіder the object of research and practіcal actіvіty іn the unіty of external and іnternal connectіons іn space and tіme.
Static two-body potential at fifth post-Newtonian order
Creators: name: Foffa, Stefano
name: Mastrolia, Pierpaolo
name: Sturani, Riccardo
name: Sturm, Christian
name: Bobadilla, William J. Torres
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We determine the gravitational interaction between two compact bodies up to the sixth power in Newton's constant GN, in the static limit. This result is achieved within the effective field theory approach to General Relativity, and exploits a manifest factorization property of static diagrams which allows to derive static post Newtonian (PN) contributions of (2n+1)-order in terms of lower order ones. We recompute in this fashion the 1PN and 3PN static potential, and present the novel 5PN contribution.
description: 7 pages, 3 figures. In v2: references added, published on PRL
MPEC 2024-G41 : 2024 FT4
Creators: name: Minor Planet Center Staff
Publisher: name: The Minor Planet Center
Year: 2024
Subjects: subject: Small Solar System bodies
valueUri: http://astrothesaurus.org/uat/1469
subject: 2024 FT4

description: The Minor Planet Electronic Circulars contain information on unusual minor planets, routine data on comets and natural satellites, and occasional editorial announcements.  They are published on behalf of Division F of the International Astronomical Union by the Minor Planet Center, Smithsonian Astrophysical Observatory, Cambridge, MA 02138, U.S.A.
Additional file 4 of Time-course transcriptome analysis of host cell response to poxvirus infection using a dual long-read sequencing approach
Creators: name: Maróti, Zoltán
name: Tombácz, Dóra
name: Prazsák, István
name: Moldován, Norbert
name: Csabai, Zsolt
name: Torma, Gábor
name: Balázs, Zsolt
name: Kalmár, Tibor
name: Dénes, Béla
name: Snyder, Michael
name: Boldogkői, Zsolt
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 4: Fig. S4. The transcript isoform categories used in this study and their abbreviations.
The Structure, Dynamics and Electronic Structure of Liquid Ag-Se Alloys Investigated by Ab Initio Simulation
Creators: name: Kirchhoff, F.
name: Holender, J. M.
name: Gillan, M. J.
Publisher: name: arXiv
Year: 1996
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Ab initio molecular-dynamics simulations have been used to investigate the structure, dynamics and electronic properties of the liquid alloy Ag(1-x)Se(x) at 1350 K and at the three compositions x=0.33, 0.42 and 0.65. The calculations are based on density-functional theory in the local density approximation and on the pseudopotential plane-wave method. The reliability of the simulations is confirmed by detailed comparisons with very recent neutron diffraction results for the partial structure factors and radial distribution functions (RDF) of the stoichiometric liquid Ag2Se. The simulations show a dramatic change of the Se-Se RDF with increasing Se content. This change is due to the formation of Se clusters bound by covalent bonds, the Se-Se bond length being almost the same as in pure c-Se and l-Se. The clusters are predominantly chain-like, but for higher x a large fraction of 3-fold coordinated Se atoms is also found. It is shown that the equilibrium fractions of Se present as isolated atoms and in clusters can be understood on a simple charge-balance model based on an ionic interpretation. The Ag and Se diffusion coefficients both increase with Se content, in spite of the Se clustering. An analysis of the Se-Se bond dynamics reveals surprisingly short bond lifetimes of less than 1 ps. The changes in the density of states with composition arise directly from the formation of Se-Se covalent bonds. Results for the electronic conductivity obtained using the Kubo-Greenwood approximation are in adequate agreement with experiment for l-Ag2Se, but not for the high Se contents. Possible reasons for this are discussed.
description: 14 pages, Revtex, 14 Postscript figures embedded in the text
Chaconia maprouneae Y. Ono & J. F. Hennen
Creators: name: Junior, Alcindo Da Silva Martins
name: Gomes, Paulo Weslem Portal
name: Sakuragui, Cássia Mônica
name: Junior, Aníbal Alves De Carvalho
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Fungi
Basidiomycota
Pucciniomycetes
Pucciniales
Chaconiaceae
Chaconia
Chaconia maprouneae

description: Chaconia maprouneae (Viégas) Y. Ono & J.F. Hennen, in Hennen & Figueiredo, Mycologia 73: 350-355. 1981.  (?/?,II/III). Figure 5 (L-M).
 BASIONYM— Coleosporium maprouneae Viégas, Bragantia 5: 5. 1945.
 Type on Maprounea brasiliensis St-Hill., Tumulo de Lund, Lagoa Santa, Minas Gerais State, Brazil, 8.04.193 6, P. Krug & G. P. Viégas- 1509.
 SPECIMENS EXAMINED— BRAZIL, PARÁ, Melgaço, Floresta Nacional de Caxiuan ã, on Euphorbiaceae – Maprounea sp., 17.VII.2016, II, A. Martins Junior & F. Vaz 190/16 (RB 756925); SÃO PAULO, Mogi Guaçu, Reserva Biológtica de Mogi Guaçu, “Campinhinha” farm, 20.VI.2017, A. Martins Junior & A.A Carvalho Junior 231/17 (RB 757294).
 DESCRIPTION: Hennen et al. (2005).
description: Published as part of Junior, Alcindo Da Silva Martins, Gomes, Paulo Weslem Portal, Sakuragui, Cássia Mônica & Junior, Aníbal Alves De Carvalho, 2022, Contributions to the knowledge and distribution of Pucciniales (rust fungi) in three Brazilian biomes, pp. 79-117 in Phytotaxa 577 (1) on page 95, DOI: 10.11646/phytotaxa.577.1.4, http://zenodo.org/record/7517579
CRISPR evolution and bacteriophage persistence in the context of population bottlenecks
Creators: name: Common, Jack
name: Edze R. Westra
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 60506 Virology

description: Population bottlenecks often cause strong reductions in genetic diversity and alter population structure. In the context of host-parasite interactions, bottlenecks could in theory benefit either the host or the pathogen. We predicted that bottlenecking of bacterial populations that evolve CRISPR immunity against bacteriophages (phage) would benefit the pathogen, because CRISPR spacer diversity can rapidly drive phages extinct. To test this, we bottlenecked populations of bacteria and phage, tracking phage persistence and the evolution of bacterial resistance mechanisms. Contrary to our prediction, bottlenecking worked in the advantage of the host. With some possible exceptions, this effect was not caused by CRISPR immunity. This host benefit is consistent with a dilution effect disproportionately affecting phage. This study provides further insight into how bottlenecking influences bacteria-phage dynamics, the role of dilution in bacteria-phage interactions, and the evolution of host immune systems.
Coleosporium ipomoeae Burrill
Creators: name: Junior, Alcindo Da Silva Martins
name: Gomes, Paulo Weslem Portal
name: Sakuragui, Cássia Mônica
name: Junior, Aníbal Alves De Carvalho
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Fungi
Basidiomycota
Pucciniomycetes
Pucciniales
Coleosporiaceae
Coleosporium
Coleosporium ipomoeae

description: Coleosporium ipomoeae (Schwein.) Burrill [as “(Schwein.) Burrill”], Bull. Illinois State Lab. Nat. Hist. 2: 217. 1885.
 Type on Ipomoea pandurata (L.) G. Mey, Salen, North Carolina, USA, s.d. Schweinitz s.n. (0/Icv ̿ IIcv/ III).
 SPECIMENS EXAMINED— BRAZIL, RIO DE JANEIRO, Itatiaia, Parque Nacional de Itatiaia, on Convolvulaceae – Ipomoea sp., 23. III.2017, II, A. Martins Junior & A. A. Carvalho Junior 80/17 (RB 757145).
 DESCRIPTION AND ILLUSTRATION: Hennen et al. (2005) and Salazar-Yepes & Carvalho Jr (2010).
description: Published as part of Junior, Alcindo Da Silva Martins, Gomes, Paulo Weslem Portal, Sakuragui, Cássia Mônica & Junior, Aníbal Alves De Carvalho, 2022, Contributions to the knowledge and distribution of Pucciniales (rust fungi) in three Brazilian biomes, pp. 79-117 in Phytotaxa 577 (1) on page 95, DOI: 10.11646/phytotaxa.577.1.4, http://zenodo.org/record/7517579
Additional file 3 of Time-course transcriptome analysis of host cell response to poxvirus infection using a dual long-read sequencing approach
Creators: name: Maróti, Zoltán
name: Tombácz, Dóra
name: Prazsák, István
name: Moldován, Norbert
name: Csabai, Zsolt
name: Torma, Gábor
name: Balázs, Zsolt
name: Kalmár, Tibor
name: Dénes, Béla
name: Snyder, Michael
name: Boldogkői, Zsolt
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3: Figure S3. Transcript and UTR lengths of the host (C. aethiops) (a) Length of transcripts in the uninfected and each p.i. samples. (b, c) Length of the 5’ and 3’ UTRs were calculated using ti.py in uninfected and each p.i. samples. Letter ‘M’ following the sample name indicates MinION sequencing, and the letter ‘S’ indicates Sequel sequencing. Horizontal lines in the box plots represent median transcript length of the given samples. Transcripts were annotated using the LoRTIA software suit.
Direct calculation of the hard-sphere crystal/melt interfacial free energy
Creators: name: Davidchack, Ruslan L.
name: Laird, Brian B.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We present a direct calculation by molecular-dynamics computer simulation of the crystal/melt interfacial free energy, $γ$, for a system of hard spheres of diameter $σ$. The calculation is performed by thermodynamic integration along a reversible path defined by cleaving, using specially constructed movable hard-sphere walls, separate bulk crystal and fluid systems, which are then merged to form an interface. We find the interfacial free energy to be slightly anisotropic with $γ$ = 0.62$\pm 0.01$, 0.64$\pm 0.01$ and 0.58$\pm 0.01 k_BT/σ^2$ for the (100), (110) and (111) fcc crystal/fluid interfaces, respectively. These values are consistent with earlier density functional calculations and recent experiments measuring the crystal nucleation rates from colloidal fluids of polystyrene spheres that have been interpreted [Marr and Gast, Langmuir {\bf 10}, 1348 (1994)] to give an estimate of $γ$ for the hard-sphere system of $0.55 \pm 0.02 k_BT/σ^2$, slightly lower than the directly determined value reported here.
description: 4 pages, 4 figures, submitted to Physical Review Letters
SPIRITS Catalog of Infrared Variables: Identification of Extremely Luminous Long Period Variables
Creators: name: Karambelkar, V. R.
name: Adams, S. M.
name: Whitelock, P. A.
name: Kasliwal, M. M.
name: Jencson, J. E.
name: Boyer, M. L.
name: Goldman, S. R.
name: Masci, F.
name: Cody, A. M.
name: Bally, J.
name: Bond, H. E.
name: Gehrz, R. D.
name: Parthasarathy, M.
name: Lau, R. M.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We present a catalog of 417 luminous infrared variable stars with periods exceeding 250 days. These were identified in 20 nearby galaxies by the ongoing SPIRITS survey with the Spitzer Space Telescope. Of these, 359 variables have $M_{[4.5]}$ (phase-weighted mean magnitudes) fainter than $-12$ and periods and luminosities consistent with previously reported variables in the Large Magellanic Cloud. However, 58 variables are more luminous than $M_{[4.5]} = -12$, including 11 that are brighter than $M_{[4.5]} = -13$ with the brightest having $M_{[4.5]} = -15.51$. Most of these bright variable sources have quasi-periods longer than 1000 days, including four over 2000 days. We suggest that the fundamental period-luminosity relationship, previously measured for the Large Magellanic Cloud, extends to much higher luminosities and longer periods in this large galaxy sample. We posit that these variables include massive AGB stars (possibly super-AGB stars), red supergiants experiencing exceptionally high mass-loss rates, and interacting binaries. We also present 3.6, 4.5, 5.8 and 8.0 $μ$m photometric catalogs for all sources in these 20 galaxies.
description: 18 pages, 25 figures
Recent trends in aroma release and perception during food oral processing: A review
Creators: name: Pu, Dandan
name: Shan, Yimeng
name: Wang, Juan
name: Sun, Baoguo
name: Xu, Youqiang
name: Zhang, Wangang
name: Zhang, Yuyu
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Space Science
subject: Neuroscience
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: The dynamic and complex peculiarities of the oral environment present several challenges for controlling the aroma release during food consumption. They also pose higher requirements for designing food with better sensory quality. This requires a comprehensive understanding of the basic rules of aroma transmission and aroma perception during food oral processing and its behind mechanism. This review summarized the latest developments in aroma release from food to retronasal cavity, aroma release and delivery influencing factors, aroma perception mechanisms. The individual variance is the most important factor affecting aroma release and perception. Therefore, the intelligent chewing simulator is the key to establish a standard analytical method. The key odorants perceived from the retronasal cavity should be given more attention during food oral processing. Identification of the olfactory receptor activated by specific odorants and its binding mechanisms are still the bottleneck. Electrophysiology and image technology are the new noninvasive technologies in elucidating the brain signals among multisensory, which can fill the gap between aroma perception and other senses. Moreover, it is necessary to develop a new approach to integrate the relationship among aroma binding parameters, aroma concentration, aroma attributes and cross-modal reactions to make the aroma prediction model more accurate.
Additional file 1: of Oral administration of antibiotics increased the potential mobility of bacterial resistance genes in the gut of the fish Piaractus mesopotamicus
Creators: name: Sáenz, Johan
name: Tamires Marques
name: Barone, Rafael
name: Cyrino, José
name: Kublik, Susanne
name: Nesme, Joseph
name: Schloter, Michael
name: Rath, Susanne
name: Vestergaard, Gisle
Publisher: name: figshare
Year: 2019
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Figure S1. Variation of weight of the sampled fish before, during and after exposure to florfenicol. Figure S2. Coverage/number of raw reads (A) and Nonpareil index diversity (B) from the bacterial community of Piaractus mesopotamicus before during and after antibiotic exposure. The index indicates the complexity of the bacterial community in terms of “Sequencing space”. Higher values indicate higher diversity. Figure S3. Effect of florfenicol on the relative abundance of the families (A) and genus (B) of the bacterial community of Piaractus mesopotamicus before, during, and after antibiotic exposure. Figure S4. Taxonomic (A), functional (B), and ARGs (C) structure of the gut bacterial community of Piaractus mesopotamicu before (day 0) and after antibiotic exposure (days 13, 18, 26, 34). Figure S5. Effect of the antibiotic florfenicol on the relative abundance of ARGs (A) and MGEs (B) of the gut bacterial community of Piaractus mesopotamicus before, during and after antibiotic treatment. Figure S6. Fold changes of different drug classes after the antibiotic treatment. Figure S7. Antibiotic resistance genes from plasmid origins. Figure S8. Correlation of total ribosomal protein L1 (A) and L12 (B) and the same genes co-occurring with MGEs genes before, during and after antibiotic exposure. Figure S9. The 30 Most abundant ARGs flanked by MGEs in the gut of Piaractus mesopotamicus before, during, and after antibiotic exposure. Figure S10. The eight most abundant genus (contigs) harboring ARGs from gut samples of Piaractus mesopotamicus before, during and after the antibiotic exposure. Table S1. Bacterial functional shift in the gut of P. mesopotamicus before, during, and after antibiotic exposure. (DOC 5958 kb)
Additional file 2 of Time-course transcriptome analysis of host cell response to poxvirus infection using a dual long-read sequencing approach
Creators: name: Maróti, Zoltán
name: Tombácz, Dóra
name: Prazsák, István
name: Moldován, Norbert
name: Csabai, Zsolt
name: Torma, Gábor
name: Balázs, Zsolt
name: Kalmár, Tibor
name: Dénes, Béla
name: Snyder, Michael
name: Boldogkői, Zsolt
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2: Figure S2. The vicinity of the host TESs. (a) Nucleotide distribution surrounding the TESs of Chlorocebus aethiops were visualized using WebLogo showing canonical sequences signaling RNA cleavage and polyadenylation. (b) The distance of the host’s polyadenylation signals from the TESs in the uninfected and the p.i. sample. The letter ‘M’ following the sample name indicates MinION sequencing, while letter ‘S’ Sequel sequencing. The horizontal lines in the box plots represent the median distance for the given sample. No significant change in the distance of TESs were observed during the viral infection. The TES positions were determined using the LoRTIA toolkit.
Additional file 1: of Thymic size is increased by infancy, but not pregnancy, nutritional supplementation in rural Gambian children: a randomized clinical trial
Creators: name: Moore, Sophie
name: Fulford, Anthony
name: Fatou Sosseh
name: Nshe, Patrick
name: Momodou Darboe
name: Prentice, Andrew
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Cell Biology
subject: Neuroscience
subject: Pharmacology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Online supplementary material. Table S1: Nutritional composition of the allocated daily intake of pregnancy supplements; Table S2: Nutritional composition of the allocated daily dose (20â g) of the infant supplements; Table S3a: Infant outcomes at birth at 24â weeks of age, by antenatal intervention arms; Table S3b Infant outcomes at 52â weeks of age, by infant intervention arms. Microsoft Word file. (DOCX 53 kb)
Anomalous thermal expansion and chiral phonons in BiB$_{3}$O$_{6}$
Creators: name: Romao, Carl P.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The origins of anomalous thermal expansion in the chiral monoclinic solid $α$-BiB$_{3}$O$_{6}$ have been studied through ab initio calculations. Positive and negative axial thermal expansion are shown to be driven by librations of borate units, elastic anisotropy, and most notably by chiral acoustic phonons involving elliptical revolutions of bismuth atoms. The chirality of the lattice gives rise to these modes by allowing the transverse acoustic branches to have opposite circular polarizations, only one of which couples strongly to the lattice strains. These results further understanding of relationships between crystallographic symmetry and physical properties.
Additional file 1 of Time-course transcriptome analysis of host cell response to poxvirus infection using a dual long-read sequencing approach
Creators: name: Maróti, Zoltán
name: Tombácz, Dóra
name: Prazsák, István
name: Moldován, Norbert
name: Csabai, Zsolt
name: Torma, Gábor
name: Balázs, Zsolt
name: Kalmár, Tibor
name: Dénes, Béla
name: Snyder, Michael
name: Boldogkői, Zsolt
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Figure S1. Optimal number of clusters based on Calisnki-Harabasz (CH) criterion. The plot on the left shows how each of the genes are partitioned with an increasing number of clusters. On the right, the maximum CH index (for 5 clusters) is shown.
Crossopsora piperis Berndt, F. O. Freire & C. N. Bastos
Creators: name: Junior, Alcindo Da Silva Martins
name: Gomes, Paulo Weslem Portal
name: Sakuragui, Cássia Mônica
name: Junior, Aníbal Alves De Carvalho
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Fungi
Basidiomycota
Pucciniomycetes
Pucciniales
Phakopsoraceae
Crossopsora
Crossopsora piperis

description: Crossopsora piperis Berndt, F.O. Freire & C.N. Bastos, Mycotaxon 83: 266. 2002.    Type on Piper hostmannianum  (Miq.) C.DC., Marituba, Pará State, Brazil, 10.V.2001, C.N. Bastos s.n. (?/?, IIse, III).
 SPECIMENS EXAMINED— BRAZIL, RIO DE JANEIRO, Itatiaia, Parque Nacional de Itatiaia, on Piperaceae – Piper hispidum Sw., 07.XII.2015, II, A. Martins Junior, A.A. Carvalho Junior & A. Riguetti 84/15 (RB 757216); 21.III.2017, A. Martins Junior & A.A. Carvalho Junior 56/17 (RB 757141); 22.III.2017, II, III, 75/17 (RB 757171); on Piperaceae – Piper malacophyllum (C.Presl) C.DC., 20.III.2017, II, 07/17 (RB 757126).
 COMMENTS— Piper malacophyllum is recorded as new host species of C. piperis.
 DESCRIPTION AND ILLUSTRATION: Berndt et al. (2002) and Salazar-Yepes & Carvalho Jr (2010).
description: Published as part of Junior, Alcindo Da Silva Martins, Gomes, Paulo Weslem Portal, Sakuragui, Cássia Mônica & Junior, Aníbal Alves De Carvalho, 2022, Contributions to the knowledge and distribution of Pucciniales (rust fungi) in three Brazilian biomes, pp. 79-117 in Phytotaxa 577 (1) on page 97, DOI: 10.11646/phytotaxa.577.1.4, http://zenodo.org/record/7517579
Exploiting molecular symmetry reduction to enrich liquid crystal phase diversity
Creators: name: Ester, David F.
name: Williams, Vance E.
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biophysics
subject: Microbiology
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Science Policy

description: The strategic tuning of liquid crystalline phase behaviour by adjusting molecular symmetry was investigated. A family of sixteen symmetrical and unsymmetrical 2,6-di(4ʹ-n-alkoxybenzoyloxy) naphthalene derivatives were prepared and their liquid crystal properties examined by differential scanning calorimetry, polarised optical microscopy, and x-ray diffraction. All mesogens formed nematic phases, with longer-chain analogues also exhibiting smectic C phases at lower temperatures. Melting temperatures of the compounds strongly depend on molecular symmetry, whereas clearing transitions are relatively insensitive to this effect. A detailed analysis indicates that the clearing point can be predicted based on the nature of the terminal alkyl chains, with only a secondary effect from molecular symmetry. Moreover, low symmetry molecules showed a greater tendency to form smectic C phases, which was ascribed to the selective depression of the melting point versus the SmC-N transition. This demonstrates that molecular symmetry-breaking is a valuable tool both for tuning liquid crystalline phase range and for increasing a material’s polymorphism.
Variations of nonvolatile taste components of mushrooms with different operating conditions and parameters from farm to fork
Creators: name: Samarasiri, Malsha
name: Chen, Wei Ning
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Biotechnology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Mushroom is a sustainable food option and a meat substitute which yet needs some strategies to enhance sensory attributes. Especially, their taste characteristics (nonvolatile taste components: soluble sugars, organic acids, free amino acids, and 5’-nucleotides) can vary significantly due to operating conditions and parameters during different stages from farm to fork. This review is aimed to provide an overall view of the determined effects of operating conditions and parameters for mushroom taste attributes, suggestions for future research from lacking variables, and some recommendations for improving the taste perception of mushrooms. Taste compounds of mushrooms alter differently based on cultivation (species, cultivation or maturity stage, substrate composition, part, grade, mycelium strain), cooking (cooking method, time, temperature), preservation, and post-harvest storage conditions (drying parameters, pretreatment, preservation method, gamma irradiation, packaging, storage time and temperature). The dominant tastes of mushrooms given by sweet and umami taste active substances can be enhanced significantly with proper control of parameters during cultivation, cooking, drying, or post-harvest storage. The parameters and variations organized in this review can be used to develop a mathematical model for obtaining optimum taste attributes of mushrooms and mushroom-based meat alternatives and to discover the variables of mushroom species not studied yet.
Direct observation of the multiple spin gap excitations in two-dimensional dimer system SrCu2(BO3)2
Creators: name: Nojiri, H
name: Kageyama, H.
name: Onizuka, Kenzo
name: Ueda, Y.
name: Motokawa, M.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Various spin gap excitations have been observed in the two-dimensional dimer system SrCu_2(BO_3)_2 by means of submillimeter wave ESR. The zero-field energy gap of the lowest spin gap excitation shows a splitting into two triplet modes and the energy splitting clearly depends on the magnetic field orientation when a field is rotated in the {\mib {ac}}-plane. A zero-field splitting is also found between the S(_z)=+1 and S(_z)=-1 branches of each triplet. These behaviors are qualitatively explained by considering the anisotropic exchange coupling of inter-dimer and intra-dimer, respectively. The averaged value of the lowest spin gap energy is determined to be 722 \pm 2 GHz(34.7 K). We have also found the second spin gap excitation at 1140 GHz(54.7 K), which indicates that the inter-dimer coupling is significantly strong. Besides these modes, a number of gapped ESR absorption are found and we propose that these multiple magnetic excitations are caused by the localized nature of the excited state in the present system.
description: 4pages 4figures
Additional file 3 of Combining paid work and family care for a patient at the end of life at home: insights from a qualitative study among caregivers in the Netherlands
Creators: name: Bijnsdorp, Femmy M.
name: Onwuteaka-Philipsen, Bregje D.
name: Boot, Cécile R.L.
name: van der Beek, Allard J.
name: Klop, Hanna T.
name: Pasman, H. Roeline W.
Publisher: name: figshare
Year: 2021
Subjects: subject: Sociology
subject: FOS: Sociology

description: Additional file 3. Topic list for semi-structured interviews. Topic list that was used in this study.
Parton-Hadron duality in QCD sum rules: quantum mechanical examples
Creators: name: Blok, B.
name: Lublinsky, M.
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Motivated by recent work on three-point QCD sum rules in heavy quark physics, we use the simple quantum mechanical models to study the basic issue of duality in three-point sum rules. We show that while in all of these models the duality in two-point sum rules works fine, the duality in three-point sum rules may be 100%- violated, leading to completely unreliable predictions for the matrix elements in question. The implications for three-point QCD sum rules are discussed. A new estimate for the parameter $λ_1$ of HQET is given.
description: 31 pages, 19 figures. Several references are added. Several typos and minor numerical mistakes are corrected. None of new changes alters any result of the paper
Figures and data for the article : "Modelling resistance welding of thermoplastic composites with a nanocomposite heating element"
Creators: name: Brassard, David
name: Dubé, Martine
name: Tavares, Jason R.
Publisher: name: Zenodo
Year: 2019

description: Figures and data for the article : "Modelling resistance welding of thermoplastic composites with a nanocomposite heating element" submitted to Journal of Composite Materials
Additional file 2 of Combining paid work and family care for a patient at the end of life at home: insights from a qualitative study among caregivers in the Netherlands
Creators: name: Bijnsdorp, Femmy M.
name: Onwuteaka-Philipsen, Bregje D.
name: Boot, Cécile R.L.
name: van der Beek, Allard J.
name: Klop, Hanna T.
name: Pasman, H. Roeline W.
Publisher: name: figshare
Year: 2021
Subjects: subject: Sociology
subject: FOS: Sociology

description: Additional file 2. Questionnaire. Questionnaire that was used for background characteristics family caregivers.
Gromov-Wasserstein Learning for Graph Matching and Node Embedding
Creators: name: Xu, Hongteng
name: Luo, Dixin
name: Zha, Hongyuan
name: Carin, Lawrence
Publisher: name: arXiv
Year: 2019
Subjects: subject: Machine Learning (cs.LG)
subject: Social and Information Networks (cs.SI)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: A novel Gromov-Wasserstein learning framework is proposed to jointly match (align) graphs and learn embedding vectors for the associated graph nodes. Using Gromov-Wasserstein discrepancy, we measure the dissimilarity between two graphs and find their correspondence, according to the learned optimal transport. The node embeddings associated with the two graphs are learned under the guidance of the optimal transport, the distance of which not only reflects the topological structure of each graph but also yields the correspondence across the graphs. These two learning steps are mutually-beneficial, and are unified here by minimizing the Gromov-Wasserstein discrepancy with structural regularizers. This framework leads to an optimization problem that is solved by a proximal point method. We apply the proposed method to matching problems in real-world networks, and demonstrate its superior performance compared to alternative approaches.
Additional file 1 of Combining paid work and family care for a patient at the end of life at home: insights from a qualitative study among caregivers in the Netherlands
Creators: name: Bijnsdorp, Femmy M.
name: Onwuteaka-Philipsen, Bregje D.
name: Boot, Cécile R.L.
name: van der Beek, Allard J.
name: Klop, Hanna T.
name: Pasman, H. Roeline W.
Publisher: name: figshare
Year: 2021
Subjects: subject: Sociology
subject: FOS: Sociology

description: Additional file 1. COREQ checklist. Consolidated criteria for reporting qualitative studies (COREQ): 32-item checklist.
Localization of Light: Dual Symmetry between Absorption and Amplification
Creators: name: Paasschens, J. C. J.
name: Misirpashaev, T. Sh.
name: Beenakker, C. W. J.
Publisher: name: arXiv
Year: 1996
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: We study the propagation of radiation through a disordered waveguide with a complex dielectric constant $ε$, and show that dual systems, which differ only in the sign of the imaginary part of $ε$, have the same localization length. Paradoxically, absorption and stimulated emission of radiation suppress the transmittance of the waveguide in the same way.
description: Added a reference to the paper by Z.Q. Zhang, Phys.Rev.B. 52, 7960 (1995)
Homology of iterated semidirect products of free groups
Creators: name: Cohen, Daniel C.
name: Suciu, Alexander I.
Publisher: name: arXiv
Year: 1995
Subjects: subject: Algebraic Geometry (math.AG)
subject: FOS: Mathematics

description: Let $G$ be a group which admits the structure of an iterated semidirect product of finitely generated free groups. We construct a finite, free resolution of the integers over the group ring of $G$. This resolution is used to define representations of groups which act compatibly on $G$, generalizing classical constructions of Magnus, Burau, and Gassner. Our construction also yields algorithms for computing the homology of the Milnor fiber of a fiber-type hyperplane arrangement, and more generally, the homology of the complement of such an arrangement with coefficients in an arbitrary local system.
description: 31 pages. AMSTeX v 2.1 preprint style
Composite Fermions with Spin Freedom
Creators: name: Yoshioka, Daijiro
Publisher: name: arXiv
Year: 1999
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: General rule for the composite fermion transformation, when the spins of the electrons are not polarized is derived. Condition for the quantum phase transition between various spin states is obtained based on the rule. This rule gives foundation for the experimental determination of the mass and $g$-factor of the composite fermion.
description: 5 pages with 1 ps figure, Revtex, to be published in J. Phys. Soc. Jpn. Vol.68 No.10. Misprints are corrected
Microscale generation of entangled photons without momentum conservation
Creators: name: Okoth, C.
name: Cavanna, A
name: Santiago-Cruz, T.
name: Chekhova, M. V.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We report, for the first time, the generation of entangled photon pairs via type-0 spontaneous parametric down conversion in an ultra-thin wafer of lithium niobate in which momentum between the pump photon and daughter photons is not conserved. The characteristics of the emission are investigated using several techniques. We find that non-phase matched SPDC is a promising source of ultra-broadband two photon radiation that exhibits remarkably tight correlation widths in both the spatial and temporal domains.
description: 9 pages, 8 figures
Large fluctuations of the area under a constrained Brownian excursion
Creators: name: Meerson, Baruch
Publisher: name: arXiv
Year: 2018
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We study large fluctuations of the area $\mathcal{A}$ under a Brownian excursion $x(t)$ on the time interval $|t|\leq T$, constrained to stay away from a moving wall $x_0(t)$ such that $x_0(-T)=x_0(T)=0$ and $x_0(|t|0$. We focus on wall functions described by a family of generalized parabolas $x_0(t)=T^γ [1-(t/T)^{2k}]$, where $k\geq 1$. Using the optimal fluctuation method (OFM), we calculate the large deviation function (LDF) of the area at long times. The OFM provides a simple description of the area fluctuations in terms of optimal paths, or rays, of the Brownian motion. We show that the LDF has a jump in the third derivative with respect to $\mathcal{A}$ at a critical value of $\mathcal{A}$. This singularity results from a qualitative change of the optimal path, and it can be interpreted as a third-order dynamical phase transition. Although the OFM is not applicable for typical (small) area fluctuations, we argue that it correctly captures their power-law scaling of $\mathcal{A}$ with $T$ with an exponent that depends continuously on $γ$ and on $k$. We also consider the cosine wall $x_0(t)=T^γ \cos[πt/(2T)]$ to illustrate a different possible behavior of the optimal path and of the scaling of typical fluctuations. For some wall functions additional phase transitions, which result from a coexistence of multiple OFM solutions, should be possible.
description: 10 pages, 5 figures
Machine learning density functional theory for the Hubbard model
Creators: name: Nelson, James
name: Tiwari, Rajarshi
name: Sanvito, Stefano
Publisher: name: arXiv
Year: 2018
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: The solution of complex many-body lattice models can often be found by defining an energy functional of the relevant density of the problem. For instance, in the case of the Hubbard model the spin-resolved site occupation is enough to describe the system total energy. Similarly to standard density functional theory, however, the exact functional is unknown and suitable approximations need to be formulated. By using a deep-learning neural network trained on exact-diagonalization results we demonstrate that one can construct an exact functional for the Hubbard model. In particular, we show that the neural network returns a ground-state energy numerically indistinguishable from that obtained by exact diagonalization and, most importantly, that the functional satisfies the two Hohenberg-Kohn theorems: for a given ground-state density it yields the external potential and it is fully variational in the site occupation.
description: 5 pages, 3 figures
Comment on "Hubble flow variations as a test for inhomogeneous cosmology"
Creators: name: Wiltshire, David L.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Saulder et al [2019, A&A, 622, A83; arXiv:1811.11976] have performed a novel observational test of the local expansion of the Universe for the standard cosmology as compared to an alternative model with differential cosmic expansion. Their analysis employs mock galaxy samples from the Millennium Simulation, a Newtonian $N$-body simulation on a $Λ$CDM background. For the differential expansion case the simulation has been deformed in an attempt to incorporate features of a particular inhomogeneous cosmology: the timescape model. It is shown that key geometrical features of the timescape cosmology have been omitted in this rescaling. Consequently, the differential expansion model tested by Saulder et al (2019) cannot be considered to approximate the timescape cosmology.
description: 4 pages; v2: small changes to match published version in A&A
Light-Front Analysis of pi^{-} Mesons Produced in Mg - Mg Collisions at 4.3 a Gev/c
Creators: name: Anikina, M.
name: Chkhaidze, L.
name: Djobava, T.
name: Garsevanishvili, V.
name: Kharkhelauri, L.
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: Light-front analysis of pi^{-} mesons in Mg-Mg collisions is carried out. The phase space of secondary pions is naturally divided into two parts in one of which the thermal equilibration assumption seems to be in a good agreement with data. Corresponding temperatures are extracted and compared to the results of other experiments. The experimental results have been compared with the predictions of the Quark Gluon String Model (QGSM) and satisfactory agreement between the experimental data and the model has been found.
description: 14 pages with 7 postscript figures. accepted for publication in Nucl. Phys. A
Non-fiducial cosmological test from geometrical and dynamical distortions around voids
Creators: name: Correa, Carlos M.
name: Paz, Dante J.
name: Padilla, Nelson D.
name: Ruiz, Andrés N.
name: Angulo, Raúl E.
name: Sánchez, Ariel G.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We present a new cosmological test using the distribution of galaxies around cosmic voids without assuming a fiducial cosmology. The test is based on a physical model for the void-galaxy cross-correlation function projected along and perpendicular to the line of sight. We treat correlations in terms of void-centric angular distances and redshift differences between void-galaxy pairs, hence it is not necessary to assume a fiducial cosmology. This model reproduces the coupled dynamical (Kaiser effect, RSD) and geometrical (Alcock-Paczynski effect, GD) distortions that affect the correlation measurements. It also takes into account the scale mixing due to the projection ranges in both directions. The model is general, so it can be applied to an arbitrary cylindrical binning scheme, not only in the case of the projected correlations. It primarily depends on two cosmological parameters: $Ω_m$, the matter fraction of the Universe today (sensitive to GD), and $β$, the ratio between the growth rate factor of density perturbations and the tracer bias (sensitive to RSD). In the context of the new generation of galaxy spectroscopic surveys, we calibrated the test using the Millennium XXL simulation for different redshifts. The method successfully recovers the cosmological parameters. We studied the effect of measuring with different projection ranges, finding robust results up to wide ranges. The resulting data covariance matrices are relatively small, which reduces the noise in the Gaussian likelihood analysis and will allow the usage of a smaller number of mock catalogues. The performance evaluated in this work indicates that the developed method is a promising test to be applied on real data.
description: 13 pages. 7 Figures. Accepted in MNRAS
Third order dielectric susceptibility in a model quantum paraelectric
Creators: name: Martonak, R.
name: Tosatti, E.
Publisher: name: arXiv
Year: 1996
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: In the context of perovskite quantum paraelectrics, we study the effects of a quadrupolar interaction $J_q$, in addition to the standard dipolar one $J_d$. We concentrate here on the nonlinear dielectric response $χ_{P}^{(3)}$, as the main response function sensitive to quadrupolar (in our case antiquadrupolar) interactions. We employ a 3D quantum four-state lattice model and mean-field theory. The results show that inclusion of quadrupolar coupling of moderate strength ($J_q \sim {{1}\over{4}} J_d$) is clearly accompanied by a double change of sign of $χ_{P}^{(3)}$ from negative to positive, near the quantum temperature $T_Q$ where the quantum paraelectric behaviour sets in. We fit our $χ_{P}^{(3)}$ to recent experimental data for SrTiO$_3$, where the sign change is identified close to $T_Q \sim 37 K$.
description: 22 pages