cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Die molekulare Basis der RH-Haplotypen mit schwacher Expression des Antigens D
Creators: name: Wagner, Franz F.
Publisher: name: Universität Ulm
Year: 2016
Subjects: subject: Partial D
subject: RH Blutgruppe
subject: Weak D
subject: Blutgruppe
subject: Phylogenie
subject: Polymerase-Kettenreaktion
subject: Rhesusfaktor
subject: Sequenzanalyse

description: Etwa 0,5 % der D-positiven Personen besitzen ein abgeschwächtes Antigen D. Die molekulare Ursache der verminderten Expression des Antigens D war unbekannt. In der vorliegenden Arbeit wurde die molekulare Basis der schwachen Expression des Antigens D in mehr als 250 Proben mit schwachem D aufgeklärt. Zu diesem Zweck wurde ein Sequenzierverfahren entwickelt, das die RHD-spezifische Analyse aller 10 RHD-Exons aus genomischer DNA erlaubte. Für alle 268 zufällig ausgewählten Proben mit schwacher Expression des Antigens D konnte eine normale RhD-Sequenz ausgeschlossen werden. Insgesamt wurden 20 verschiedene RHD-Allele in Proben mit schwacher Expression des Antigens D identifiziert. Zwei dieser Allele entsprachen typischen partial D. Fünfzehn Allele besaßen eine einzelne Punktmutation, die zu einer Aminosäuresubstitution im transmembranären oder intrazellulären Bereich des RhD-Proteins führte. Drei Allele besaßen mehrere, nicht konsekutiv angeordnete Substitutionen von RhD-spezifischen Aminosäuren durch RhCE-spezifische. Aufgrund einer Analyse Haplotyp-spezifischer Polymorphismen in Intron 3 und 6 muß davon ausgegangen werden, daß Allele mit schwacher Expression des Antigens D in den verschiedenen Haplotypen unabhängig voneinander entstanden. Die konstante Beobachtung aberranter kodierender Sequenzen bei schwachem D, der Nachweis einer Haplotyp-spezifischen Evolution und eine überzufällig niedrige Frequenz stummer Mutationen sprechen für eine kausale Beziehung von aberranter Proteinsequenz und schwacher Expression des Antigens D. Unsere Ergebnisse widerlegen die Ansicht, daß bei schwachem D das RhD-Protein rein quantitativ vermindert ist. Wir konnten auf der Basis unserer Daten ein einheitliches Modell zur Beziehung von RHD-Struktur und Antigendichte bei schwachem D und partial D vorschlagen. Unsere Ergebnisse erlauben erstmals eine nahezu vollständige molekulare Beschreibung der in der D-positiven Population zu beobachtenden molekularen Variabilität. In Zukunft kann jede Anti-D-Immunisierung einem molekular definierten RHD-Allel mit bestimmbarer Allelfrequenz zugeordnet werden.
Additional file 2 of Results from omic approaches in rat or mouse models exposed to inhaled crystalline silica: a systematic review
Creators: name: Morin, Laura
name: Lecureur, Valérie
name: Lescoat, Alain
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 2. Table S2. Search terms used in databases.
Emergence of Robust and Efficient Networks in a Family of Attachment Models
Creators: name: Liao, Fuxuan
name: Hayashi, Yukio
Publisher: name: arXiv
Year: 2021
Subjects: subject: Physics and Society (physics.soc-ph)
subject: Social and Information Networks (cs.SI)
subject: Adaptation and Self-Organizing Systems (nlin.AO)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: Self-organization of robust and efficient networks is important for a future design of communication or transportation systems, because both characteristics are not coexisting in many real networks. As one of the candidates for the coexisting, the optimal robustness of onion-like structure with positive degree-degree correlations has recently been found, and it can be generated by incrementally growing methods based on a pair of random and intermediation attachments with the minimum degree selection. In this paper, we introduce a continuous interpolation by a parameter $β\geq 0$ between random and the minimum degree attachments to investigate the reason why the minimum degree selection is important. However, we find that the special case of the minimum degree attachment can generate highly robust networks but with low efficiency as a chain structure. Furthermore, we consider two intermediation models modified with the inverse preferential attachment for investigating the effect of distance on the emergence of robust onion-like structure. The inverse preferential attachments in a class of mixed attachment and two intermediation models are effective for the emergence of robust onion-like structure, however, when $β$ is large enough, a small amount of random attachment is necessary for the network efficiency. Such attachment models indicate a prospective direction to the future growth of our network infrastructures.
Association of cervical and lumbar paraspinal muscle composition using texture analysis of MR-based proton density fat fraction maps
Creators: name: Burian, Egon
name: Becherucci, Edoardo A.
name: Junker, Daniela
name: Sollmann, Nico
name: Greve, Tobias
name: Hauner, Hans
name: Zimmer, Claus
name: Kirschke, Jan S.
name: Karampinos, Dimitrios C.
name: Subburaj, Karupppasamy
name: Baum, Thomas
name: Dieckmeyer, Michael
Publisher: name: Universität Ulm
Year: 2021
Subjects: subject: quantitative imaging
subject: proton density fat fraction
subject: muscle composition
subject: paraspinal muscle
subject: texture analysis
subject: DDC 610 / Medicine & health
subject: Magnetic resonance imaging
subject: Muscles
subject: Paraspinal muscles
subject: Kernspintomografie
subject: Muskel

description: In this study, the associations of cervical and lumbar paraspinal musculature based on a texture analysis of proton density fat fraction (PDFF) maps were investigated to identify gender- and anatomical location-specific structural patterns. Seventy-nine volunteers (25 men, 54 women) participated in the present study (mean age ± standard deviation: men: 43.7 ± 24.6 years; women: 37.1 ± 14.0 years). Using manual segmentations of the PDFF maps, texture analysis was performed and texture features were extracted. A significant difference in the mean PDFF between men and women was observed in the erector spinae muscle (p < 0.0001), whereas the mean PDFF did not significantly differ in the cervical musculature and the psoas muscle (p > 0.05 each). Among others, Variance(global) and Kurtosis(global) showed significantly higher values in men than in women in all included muscle groups (p < 0.001). Not only the mean PDFF values (p < 0.001) but also Variance(global) (p < 0.001), Energy (p < 0.001), Entropy (p = 0.01), Homogeneity (p < 0.001), and Correlation (p = 0.037) differed significantly between the three muscle compartments. The cervical and lumbar paraspinal musculature composition seems to be gender-specific and has anatomical location-specific structural patterns.
B cell receptor isotypes differentially associate with cell signaling, kinetics, and outcome in chronic lymphocytic leukemia
Creators: name: Mazzarello, Andrea N.
name: Gentner-Göbel, Eva
name: Dühren-Von Minden, Marcus
name: Tarasenko, Tatyana N.
name: Nicolo, Antonella
name: Ferrer, Gerardo
name: Vergani, Stefano
name: Liu, Yun
name: Bagnara, Davide
name: Rai, Kanti R.
name: Burger, Jan A.
name: McGuire, Peter J.
name: Maity, Palash C.
name: Jumaa, Hassan
name: Chiorazzi, Nicholas
Publisher: name: Universität Ulm
Year: 2022
Subjects: subject: SURFACE IGM EXPRESSION
subject: GENE MUTATION STATUS
subject: ANTIGEN RECEPTORS
subject: PROLIFERATION
subject: DISEASE
subject: METABOLISM
subject: IBRUTINIB
subject: INDICATE
subject: SUBSETS
subject: ZAP-70
subject: DDC 610 / Medicine & health
subject: Leukemia, Lymphocytic, Chronic, B-Cell; Drug therapy
subject: Protein kinase inhibitors; Therapeutic use
subject: Receptors, Antigen
subject: Chronisch-lymphatische Leukämie
subject: Chemotherapie
subject: B-Lymphozyten-Rezeptor

description: In chronic lymphocytic leukemia (CLL), the B cell receptor (BCR) plays a critical role in disease development and progression, as indicated by the therapeutic efficacy of drugs blocking BCR signaling. However, the mechanism(s) underlying BCR responsiveness are not completely defined. Selective engagement of membrane IgM or IgD on CLL cells, each coexpressed by more than 90% of cases, leads to distinct signaling events. Since both IgM and IgD carry the same antigen-binding domains, the divergent actions of the receptors are attributed to differences in immunoglobulin (Ig) structure or the outcome of signal transduction. We showed that IgM, not IgD, level and organization associated with CLL-cell birth rate and the type and consequences of BCR signaling in humans and mice. The latter IgM-driven effects were abrogated when BCR signaling was inhibited. Collectively, these studies demonstrated a critical, selective role for IgM in BCR signaling and B cell fate decisions, possibly opening new avenues for CLL therapy.
Additional file 3 of Results from omic approaches in rat or mouse models exposed to inhaled crystalline silica: a systematic review
Creators: name: Morin, Laura
name: Lecureur, Valérie
name: Lescoat, Alain
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 3. Table S3. Assessment of studies risk of bias using SYRCLE’s risk of bias tool.
sj-docx-2-ene-10.1177_25148486221126619 - Supplemental material for Imaginaries on ice: Sociotechnical futures of data centre development in Norway and Iceland
Creators: name: Upham, Paul
name: K. Sovacool, Benjamin
name: G. Monyei, Chukwuka
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 120599 Urban and Regional Planning not elsewhere classified
subject: FOS: Social and economic geography

description: Supplemental material, sj-docx-2-ene-10.1177_25148486221126619 for Imaginaries on ice: Sociotechnical futures of data centre development in Norway and Iceland by Paul Upham, Benjamin K. Sovacool and Chukwuka G. Monyei in Environment and Planning E: Nature and Space
Revisiting of Carex sect. Confertiflorae s.l. (Cyperaceae): new data from molecular and morphological evidence and first insights on Carex biogeography in East Asia.
Creators: name: Lu, Yi-fei
name: Jin, Xiao-Feng
name: Ikeda, Hiroshi
name: Yano, Okihito
name: Benítez Benítez, Carmen
name: Chen, Wei-Jie
name: Liu, Yong-Di
name: Jiménez-Mejías, Pedro
name: Yu, Ming-Jian
Publisher: name: Zenodo
Year: 2021
Subjects: Carex
sect. Confertiflorae s.l.
eastern Asia
scaffolding approach
sectional delimitation

description: Carex sect. Confertiflorae s.l., contains ca. 40 species and diverse in E Asia. It has one of the most unstable delimitations in the literature, and the section was proposed to split into two sections up to five different ones. Recent phylogenetic reconstructions showed Confertiflorae s.l. not to be monophyletic. In this study we investigate the phylogenetic structure, morphological affinities, and biogeographic history of sect. Confertiflorae s.l. We performed a taxon-based approach to explore the morphological affinities of the species considered in sect. Confertiflorae. We studied macromorphological observations and micromorphology of the nutlets using SEM, and used five molecular markers to reconstruct the phylogeny. The placement of all the species on a previously published megaphylogeny was tested in a preliminary exploration using a scaffolding approach. Then a core of species was selected to run the main analyses. The phylogenetic analyses confirmed the polyphyly of sect. Confertiflorae s.l., whose representatives were found within five distinct clades, with sect. Confertiflorae s.s. and sect. Molliculae clades were found to be closely related and contained the majority of the species. The composition of the two clades agreed with the morphological structure of the group, and we confirmed an exclusive combination of features. The origin of the two clades was found to be in the early Pliocene while the majority of the diversification events within each clade took place during the Pleistocene. Eventually, we proposed the rearrangement of sect. Confertiflorae as previously conceived as three independent sections: sects. Alliiformes, Molliculae, and Paludosae.
description: Funding provided by: National Natural Science Foundation of China-Henan Joint Fund
Crossref Funder Registry ID: http://dx.doi.org/10.13039/501100014220
Award Number: 31770212, 31470304
title: Kampagnenkonzeption für Kandidatinnen
Creators: name: Kuba, Sylvia
Year: 2009

description: Die Arbeit untersucht die geschlechtsspezifischen Aspekte von Wahlkampfkommunikation und stellt die Frage: Müssen politische Wahlkampagnen für Kandidatinnen anderes konzipiert werden als für Kandidaten. Dabei werden auf der Grundlage theoretischer Ansätze aus der Wahl- und der Wahlkampfforschung, empirischer Studien zur Kampagnenkonzeption und Ergebnissen aus internationalen Untersuchungen über geschlechtsspezifische Bedingungen der Wahlkampfführung Leitfäden für Expertengespräche aus der Wahlkampfpraxis entwickelt. Diese kommen in qualitativen Interviews zur Anwendung. Die zentralen Ergebnisse: Bedingt durch verschiedene Faktoren wie etwa die männliche Codierung des politischen Feldes, die Unterrepräsentanz von Frauen in politischen Strukturen oder den Widerspruch zwischen tradierten Vorstellungen von „Weiblichkeit“ bzw. von politischer „Führungsstärke“ müssen Kampagnen für Kandidatinnen in gewissen Bereichen anders gestaltet werden als für Kandidaten um die optimalen Bedingungen zur Stimmenmaximierung zu schaffen. Das gilt zum Beispiel in Bezug auf die Kampagnendramaturgie, die Inszenierung der/des Kandidaten/in, den Image-Aufbau und Zielgruppenansprache. So haben männliche Kandidaten eine größere Rollenvarianz zur Selbstdarstellung zur Verfügung. Kandidatinnen können dagegen politischen Wandel potentiell besser verkörpern. Sie können die Zielgruppe junge Frauen leichter für sich gewinnen, während Kandidaten einen Vorteil bei männlichen Wählern in eher konservativ geprägten, ländlichen Gebieten haben. Das größte Manko der weiblichen Kandidatinnen ist, dass ihnen generell weniger Kompetenz zugeschrieben wird als Kandidaten. Eine Strategie damit umzugehen, ist etwa der vermehrte Einsatz persönlicher und unvermittelter Kommunikation. Die Experteninterviews zeigen auch, dass Kandidatinnen mit Einblicken in ihr Privatleben ein höheres Risiko zur Polarisierung haben. Das Argument: „Die Zeit ist reif für eine Frau“ kann allerdings vor allem bei der Zielgruppe der jüngeren Frauen eine starke Wirkung erzeugen.
sj-docx-5-ipe-10.1177_20416695221124964 - Supplemental material for Florence “blues” are clothed in triple basic terms
Creators: name: Del Viva, Maria Michela
name: Mariani, Ilaria
name: Caro, Carmen De
name: Paramei, Galina V.
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: Neuroscience

description: Supplemental material, sj-docx-5-ipe-10.1177_20416695221124964 for Florence “blues” are clothed in triple basic terms by Maria Michela Del Viva, Ilaria Mariani, Carmen De Caro and Galina V. Paramei in i-Perception
Developing computational descriptors to analyse and classify Glycosylphosphatidylinositol (GPI) proteins in Apicomplexan
Creators: name: Canovas, Rodrigo
name: Sauer, Lena
name: Milanesi, Sylvain
name: Shams-Eldin, Hossam
name: Schwarz, Ralph
name: Roche, Daniel B.
name: Cornilot, Emmanuel
Publisher: name: F1000Research
Year: 2017

description: Glycosylphosphatidylinositol (GPI) and GPI-anchored proteins, represent potential new malaria drug targets. GPI proteins are outer plasma membranes anchored proteins, found in the majority of living organisms, including mammals, yeast, protozoan in addition to archaebacteria. Parasitic GPI proteins have numerous functions including; surface coat proteins; receptors; adhesion molecules; enzymes; in addition to possible roles in host-parasite interactions and immune escape.

Sensitivity and specificity of machine-learning algorithms predicting GPI-proteins is weakened by the diversity of the N- and C-terminus specific signals. We present a feature-based approach, predicting GPI-proteins from full-length amino-acid sequence. We show that predicting the hydrophobic properties of the N- and C-terminal, in addition to the central core of the protein was more accurate for the prediction of

GPI-proteins than current approaches GPI proteins constitute a group which is highly variable from one species to another, but main functions are related to cell-cell interactions. Few enzymatic function are associated with GPI proteins. Therefore, prediction of the GPI proteome can only rely on the detection of the C-terminus region interacting with the enzyme catalyzing transfer of the protein on the GPI anchor.
Computing the Periodic Part of a Request Function for Tasks with Variable Rate-dependent Behavior
Creators: name: Feld, Timo
name: Slomka, Frank
Publisher: name: Universität Ulm
Year: 2022
Subjects: subject: Real-time analysis
subject: Rate-dependent task
subject: Variable rate-dependent behavior (VRB)
subject: Adaptive variable-rate (AVR)
subject: Schedulability test
subject: Automotive
subject: Engine control unit
subject: DDC 004 / Data processing & computer science
subject: DDC 600 / Technology (Applied sciences)
subject: Automotive computers
subject: Motorenprüfstand

description: Engine control applications include tasks with variable rate dependent behaviour (VRB-tasks) that adapt their behavior as a function of the engine speed. For such tasks, the frequency of activation, execution times and deadlines depend on the rotation speed of the engine. In recent years exact methods for the analysis of such VRB-tasks have been introduced, where the task is represented by the accumulated execution requirement in relation to the time interval. In this paper we identify the periodic behaviour of this curve and determine the recurrent term. The result is the first method to have precise knowledge of the exact execution requirement of VRB-tasks for arbitrary high intervals.
Additional file 4 of Results from omic approaches in rat or mouse models exposed to inhaled crystalline silica: a systematic review
Creators: name: Morin, Laura
name: Lecureur, Valérie
name: Lescoat, Alain
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 4. Table S4. Summary of omics methods and organs used in studies
Additional file 5 of Results from omic approaches in rat or mouse models exposed to inhaled crystalline silica: a systematic review
Creators: name: Morin, Laura
name: Lecureur, Valérie
name: Lescoat, Alain
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 5. Fig. S1. Crystalline silica exposure outcomes studied in rat and mouse organs
Refining variability estimates in neuroimaging: the BOLD volatility index
Creators: name: Moreau, David
name: Wiebels, Kristina
name: Roberts, Reece R.
Publisher: name: F1000Research
Year: 2017

description: Neural variability is an important component of cognition, with critical adaptive properties, yet typical measures remain coarse and imprecise. Here, we present a new measure of variability, the BOLD Volatility Index (BVI), which provides a fine-grained estimate of the degree of change across time in a time series. In a series of simulations, we show how and when the BVI can outperform typical estimates, and quantify the magnitude of the differences. We further validate this approach with analyses of data from the Human Connectome Project.
Computing pangenome statistics in R
Creators: name: Mpatziakas, Asterios
name: Psomopoulos, Fotis E.
name: Moysiadis, Theodoros
name: Sgardelis, Stefanos
Publisher: name: F1000Research
Year: 2017

description: Advances in sequencing techniques have massively increased the publicly accessible -omics data and thus enable further and more extensive research opportunities on genome diversity. The concept of the pangenome refers to the union of gene families shared by a set of genomes. Several studies  have implemented specific pangenome analyses for a variety of organisms, ranging from microbes to viruses and plants, leading to genomic projects of various scales and the advancement of general understanding of evolutionary mechanisms, generating usable knowledge across multiple sectors.

A pangenome can be defined as the identification of three distinct subsets of gene families; the Core genome consisting of gene families that are shared amongst all genomes, the Dispensable genome consisting of  families present in the majority of the genomes and iii) genes that have presence only in one genome, known as Peripheral . The essential part of this type of analysis is the use of data in an encompassing way instead of the traditionally linear approaches evident in targeted genome studies.

We present open source software freely available for the R statistical language, usable in the later stages of such an analysis, i.e. after the construction of the gene families for a given set of genomes, based on information of the full complement of gene families. A complete methodology is proposed, suitable for sets of genomes of varying complexity, optimizing and enriching an assortment of existing measures from micropan. Finally, we demonstrate the methodology using publicly available data.
Additional file 6 of Results from omic approaches in rat or mouse models exposed to inhaled crystalline silica: a systematic review
Creators: name: Morin, Laura
name: Lecureur, Valérie
name: Lescoat, Alain
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 6. Fig. S2. Heatmap representing the main cellular responses sub-domains found in the lungs or at systemic level (serum, plasma, spleen) in included studies. Heatmap is expressed as the percentage of cellular response sub-domains of all biological processes, pathways and networks mentioned in studies among. the total number of different cellular response terms in lungs (N = 61) and at systemic level (N = 2) retrieved in all included studies.
Raw data, code, and derived data from: Nonchalant neighbors: space-use and overlap of the critically endangered Elongated Tortoise
Creators: name: Ward, Matthew
name: Marshall, Benjamin
name: Hodges, Cameron
name: Montano, Ysabella
name: Artchawakom, Taksin
name: Waengsothorn, Surachit
name: Strine, Colin
Publisher: name: Zenodo
Year: 2021

description: To prevent population extirpations we need to understand a species' requirements, especially for critically endangered species inhabiting biodiversity hotspots. Studying animal movement provides necessary insights and gauges protected area effectiveness. Southeast Asian protected areas are becoming isolated, stressing the need for maintaining population viability. We used radio-telemetry with the critically endangered Elongated Tortoise (Indotestudo elongata) to assess: movements, space-use, and conspecific overlap in a small protected area –Sakaerat Biosphere Reserve, Thailand. Movements were weakly seasonal, higher in hot and wet seasons than the dry season, and annual space-use varied (4.24–55.57 ha), with conspecifics frequently overlapping. Conspecific comparisons revealed males (n = 5) moved similarly to females (n = 12) but used larger areas. Despite more instances of conspecific attraction over avoidance (20:8), avoidance/attraction behaviour appeared disconnected from individual size; therefore, interaction patterns may result from resources locations (mates or food) rather than competition (i.e., no evidence of smaller individuals avoiding larger individuals). Female-female attraction suggests no resource exclusion tactics at our temporal resolution. Male-female attraction may indicate seasonal reproductive movements, but we couldn't detect significant interactive effects linking conspecific attraction or step length to breeding activity. Our observations of annual space-use and overlap present critical components when designing robust population assessments underlining any successful I. elongata conservation effort. In the context of previous work connecting space overlap with population viability, our results suggest the biosphere population of I. elongata to be reproductive, with enough resources to be viable, emphasising the importance of relatively small protected natural areas.
description: A basic explanation of the data contents can be found alongside the data in a metadata file. A warning for those re-using movement data: there are instances where two locations where recorded for an animal on a given day. These days with two locations do not have timestamps and so will cause issues with time-using analyses.
sj-docx-1-jop-10.1177_02698811221127318 – Supplemental material for Associations between MDMA/ecstasy use and physical health in a U.S. population-based survey sample
Creators: name: Jones, Grant
name: Ricard, Jocelyn A.
name: Hendricks, Peter
name: Simonsson, Otto
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)

description: Supplemental material, sj-docx-1-jop-10.1177_02698811221127318 for Associations between MDMA/ecstasy use and physical health in a U.S. population-based survey sample by Grant Jones, Jocelyn A. Ricard, Peter Hendricks and Otto Simonsson in Journal of Psychopharmacology
Online monitoring of carbon dioxide and oxygen in exhaled mouse breath via substrate-integrated hollow waveguide Fourier-transform infrared-luminescence spectroscopy
Creators: name: Seichter, Felicia
name: Tütüncü, Erhan
name: Hagemann, Leila Tamina
name: Vogt, Josef
name: Wachter, Ulrich
name: Gröger, Michael
name: Kress, Sandra
name: Radermacher, Peter
name: Mizaikoff, Boris
Publisher: name: Universität Ulm
Year: 2018
Subjects: subject: FTIR
subject: iHWG
subject: Exhaled breath analysis
subject: On-line monitoring
subject: Mid-infrared
subject: Luminescence sensing
subject: Substrate- integrated hollow waveguide
subject: DDC 540 / Chemistry & allied sciences
subject: Respiration
subject: Mice
subject: Oxygen
subject: Carbon dioxide
subject: Fourier transform infrared spectroscopy
subject: Waveguides
subject: Luminescence
subject: Exspiration
subject: Maus
subject: Sauerstoff
subject: Kohlendioxid
subject: FT-IR-Spektroskopie
subject: Wellenleiter
subject: MIR
subject: Lumineszenzspektroskopie

description: Exhaled breath offers monitoring bio markers, as well as diagnosing diseases and therapeutic interventions. In addition, vital functions may be non-invasively monitored on- line. Animal models are frequently used in research for determining novel therapeutic approaches and/or for investigating biological pathways. The exhaled carbon dioxide concentration, exhaled and inhaled oxygen concentration, and the subsequent respiratory quotient (RQ) offer insight into metabolic activity. One may adapt breath sampling systems and equipment designed for human applications to large animal studies, however, such adaptations are usually impossible for small animals due to their minuscule breath volume. Here, we present a system for on-line monitoring of exhaled breath in a “mouse intensive care unit” (MICU) based on a modified Fourier-Transform infrared (FTIR) spectrometer equipped with a substrate integrated hollow waveguide (iHWG) gas cell, and a luminescence-based oxygen flow-through sensor integrated into the respiratory equipment of the MICU. Thereby, per-minute resolution of O2 consumption and CO2 production was obtained, and the 95% confidence range of the determined respiratory quotient was ±0.04 or approximately ±5% of the nominal value. Changes in the RQ value caused by intervention in either the metabolic or the respiratory system may therefore reliably be detected.
sj-docx-2-msj-10.1177_13524585221127941 – Supplemental material for A proposed new taxonomy of cognitive phenotypes in multiple sclerosis: The International Classification of Cognitive Disorders in MS (IC-CoDiMS)
Creators: name: Hancock, Laura M
name: Galioto, Rachel
name: Samsonov, Alexey
name: Busch, Robyn M
name: Hermann, Bruce
name: Matias-Guiu, Jordi A
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: 111702 Aged Health Care
subject: FOS: Health sciences

description: Supplemental material, sj-docx-2-msj-10.1177_13524585221127941 for A proposed new taxonomy of cognitive phenotypes in multiple sclerosis: The International Classification of Cognitive Disorders in MS (IC-CoDiMS) by Laura M Hancock, Rachel Galioto, Alexey Samsonov, Robyn M Busch, Bruce Hermann and Jordi A Matias-Guiu in Multiple Sclerosis Journal
Monte Carlo simulations of spin transport in nanoscale In$_{0.7}$Ga$_{0.3}$As transistors: Temperature and size effects
Creators: name: Thorpe, B
name: Kalna, K
name: Schirmer, S
Publisher: name: arXiv
Year: 2021
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Spin-based metal-oxide-semiconductor field-effect transistors (MOSFET) with a high-mobility III-V channel are studied using self-consistent quantum corrected ensemble Monte Carlo device simulations of charge and spin transport. The simulations including spin-orbit coupling mechanisms (Dresselhaus and Rashba coupling) examine the electron spin transport in the 25 nm gate length In$_{0.7}$Ga$_{0.3}$As MOSFET. The transistor lateral dimensions (the gate length, the source-to-gate, and the gate-to-drain spacers) are increased to investigate the spin-dependent drain current modulation induced by the gate from room temperature of 300 K down to 77 K. This modulation increases with increasing temperature due to increased Rashba coupling. Finally, an increase of up to 20 nm in the gate length, source-to-gate, or the gate-to-drain spacers increases the spin polarization and enhances the spin-dependent drain current modulation at the drain due to polarization-refocusing effects.
Supplemental Material - Two-Dimensional Clustering of Spectral Changes for the Interpretation of Raman Hyperspectra
Creators: name: Schulze, H. Georg
name: Rangan, Shreyas
name: Vardaki, Martha Z.
name: Blades, Michael W.
name: Turner, Robin F. B.
name: Piret, James M.
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 99999 Engineering not elsewhere classified
subject: FOS: Other engineering and technologies

description: Supplemental Material for Two-Dimensional Clustering of Spectral Changes for the Interpretation of Raman Hyperspectra by H G. Schulze, Shreyas Rangan, Martha Z. Vardaki, Michael W. Blades, Robin F. B. Turner, and James M. Piret in Applied Spectroscopy
Training transitions: From dependence to independence
Creators: name: McDowell, Gary
Publisher: name: F1000Research
Year: 2017

description: Workshop presented at University of Chicago and University of Illinois, Chicago in August 2017. From University of Chicago's announcement: "This workshop will provide some of the latest information about the state of the scientific workforce and a discussion session for graduate students and postdocs to identify the barriers they face, and how to overcome them, in reaching independent careers."
sj-docx-1-jix-10.1177_10925872221130319 – Supplemental material for Uncovering Zoo Audience Values Necessary to Create Effective Messaging About Illegal Wildlife Trade
Creators: name: Nageotte, Nichole L.
name: Eagle-Malone, Rebecca
name: Searles, Vicki
Publisher: name: SAGE Journals
Year: 2022
Subjects: Education

description: Supplemental material, sj-docx-1-jix-10.1177_10925872221130319 for Uncovering Zoo Audience Values Necessary to Create Effective Messaging About Illegal Wildlife Trade by Nichole L. Nageotte, Rebecca Eagle-Malone and Vicki Searles in Journal of Interpretation Research
Comparative ex vivo investigations on the cutting quality of the CO2 laser and the diode pumped Er:YAG laser
Creators: name: Wurm, Holger
name: Schuler, Patrick Johannes
name: Hausladen, Florian
name: Grässlin, René
name: Hoffmann, Thomas Karl
name: Stock, Karl
name: Reins, Elisabeth Friederike
Publisher: name: Universität Ulm
Year: 2021
Subjects: subject: CO2 laser
subject: Er:YAG laser
subject: diode pumped
subject: high repetition rate
subject: 2.94 μm
subject: head and neck surgery
subject: DDC 610 / Medicine & health
subject: Oncology
subject: Lasers, Gas; Therapeutic use
subject: Head and neck neoplasms; Surgery
subject: Lasers, Solid-state; Therapeutic use
subject: Onkologie
subject: Krebs
subject: Lasertherapie
subject: Erbium-YAG-Laser

description: Objectives: A sufficient histological evaluation is a key pillar in oncological treatment, especially in situations of cancer of unknown primary. CO2 laser technology is used in clinical routine of soft tissue surgery because of its cutting quality and availability. Diode pumped solid state Er(bium):YAG laser systems promise a higher cutting efficiency and minor thermal damages. The aim of this study was to compare both laser systems with respect to their suitability for cutting soft tissue. Methods: A setup was realized which enables comparable experiments with the clinical CO2 laser (AcuPulse 40ST DUO, Lumenis) and the Er:YAG laser system (DPM 40, Pantec Biosolutions AG). Fresh mucosal samples of porcine tongues were used to determine the influence of laser power and sample velocity on cutting depth and thermal damage width for both lasers. In addition, for the Er:YAG laser, the influence of the pulse repetition rate was examined additionally. For analysis, images of histological sections were taken. Results: In all experiments, the Er:YAG laser shows a significantly higher cutting depth (P < 0.0001) and less thermal damage width (P < 0.0001) than the CO2 laser. For example, at an average power of 7.7 W and a sample velocity of 5 mm/s the Er:YAG laser shows a mean cutting depth of 1.1 mm compared to the CO2 laser with 500 μm. While the Er:YAG laser shows a mean thermal damage width of 70 μm compared to 120 μm. Furthermore, the Er:YAG enables the adjustment of the cutting depth and thermal damage width by varying the irradiation parameters. A decrease of the repetition rate leads to a reduction of thermal damage. For example, a repetition rate of 100 Hz results in a thermal damage width of 46 μm compared to 87 μm at 800 Hz at an average power of 7.7 W and a cutting velocity = 5 mm/s while a homogenous cutting quality can be achieved. Conclusions: In conclusion, the results of these ex vivo experiments demonstrate significant advantages of the diode pumped Er:YAG laser system for soft tissue ablation compared to the CO2 laser, in particular regarding cutting efficiency and thermal damage width.
title: Налоговое право. Сборник тестов по дисциплине
title: Практикум
titleType: Subtitle
Creators: name: Фадеева И.В.
name:  Лахтина Т.А.
name:  Кузнецов Л.Д.
name:  Сакулина Л.Л.
name:  Попович О.М.
Publisher: name: Ай Пи Эр Медиа
Year: 2018

description: Настоящее издание составлено с учетом требований государственного образовательного стандарта по дисциплине «Налоговое право» в соответствии с программой Московского университета МВД России имени В.Я. Кикотя и предназначено для использования в учебном процессе обучающихся по специальностям 40.05.01 Правовое обеспечение национальной безопасности (специалист) и 40.05.02 Правоохранительная деятельность (специалист). Практикум содержит большое количество тестовых заданий по каждой теме дисциплины, список рекомендуемой литературы и нормативно-правовых актов, необходимых для подготовки и проведения занятий и углубленного изучения дисциплины.
description: The present publication is drawn up taking into account requirements of the state educational standard on discipline "Tax law" in accordance with the programme of Moscow University of the MIA of Russia named after V. J. Kikot and is intended for use in the educational process of students by specialties 40.05.01 Legal provision of national security (specialist) and 40.05.02 law Enforcement (specialist). The workshop contains a large number of test tasks in each subject discipline, list of recommended literature and normative legal acts necessary for the preparation and conduct of exercises and in-depth study of the discipline.
sj-docx-4-tcn-10.1177_10436596221129228 – Supplemental material for Saudi Women’s Breastfeeding Knowledge, Attitude, and Practices: A Systematic Review and Meta-analysis
Creators: name: Alahmed, Salma
name: Meedya, Shahla
name: Mutair, Abbas Al
name: Fernandez, Ritin
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 111099 Nursing not elsewhere classified
subject: FOS: Health sciences

description: Supplemental material, sj-docx-4-tcn-10.1177_10436596221129228 for Saudi Women’s Breastfeeding Knowledge, Attitude, and Practices: A Systematic Review and Meta-analysis by Salma Alahmed, Shahla Meedya, Abbas Al Mutair and Ritin Fernandez in Journal of Transcultural Nursing
Stolonial movement of demosponge Amphilectus lobatus
Creators: name: Lavrov, Andrey
name: Kosevich, Igor
Publisher: name: F1000Research
Year: 2017

description: Sponges (phylum Porifera) traditionally are represented as inactive sessile filter-feeding animals which devoid of any behavior except filtering activity. However, different time-lapse techniques show that sponges are able to wide range of coordinated but slow whole-organism behavior. The present study concerns peculiar type of such behavior in the demosponge Amphilectus lobatus (Montagu, 1814) – stolonial movement. During stolonial movement sponge produces outgrowths (stolons) which crawl along substrate and branch thus forming complex net covering considerable area of substrate. This net is used by sponge for searching new spots with appropriate environmental conditions for individual relocation. Branching stolons allow sponge exploring the wide substrate areas, while the ability to retract some stolons minimizes the cost of such exploring. After such spots are found all cells of maternal sponge migrate through stolons leaving naked maternal skeleton forming one or several daughter sponges in the new location. Thus, stolonial movement combines traits of crawling along substrate and asexual reproduction. This behavior relies on the massive cell dedifferentiation followed by coordinated cell migrations to the spot of new sponge body formation and their subsequent differentiation into the specialized cell types.
Mpox Seminar
Creators: name: Lee, SangTae
name: Tanaka, Hiroaki
Publisher: name: Zenodo
Year: 2023
Subjects: Mpox
Monkeypox
Pox virus
Nara Association of Medical Technologist

description: Materials from the Mpox Seminar Held on April 24, 2023, Hosted by the Nara Association of Medical Technologist.
Additional file 3 of Characterization and mitigation of artifacts derived from NGS library preparation due to structure-specific sequences in the human genome
Creators: name: Chen, HuiJuan
name: Zhang, YiRan
name: Wang, Bing
name: Liao, Rui
name: Duan, XiaoHong
name: Yang, ChunYan
name: Chen, Jing
name: Hao, YanTong
name: Shu, YingShuang
name: Cai, LiLi
name: Leng, Xue
name: Qian, Nian-Song
name: Sun, DaWei
name: Niu, Beifang
name: Zhou, Qiming
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Biological Sciences not elsewhere classified
subject: Plant Biology

description: Supplementary Material 3.
Low-rank update of preconditioners for saddle-point systems in fluid flow problems
Creators: name: Beddig, Rebekka Salome
Publisher: name: TUHH Universitätsbibliothek
Year: 2024
Subjects: subject: preconditioner
subject: low-rank update
subject: saddle-point system
subject: Schur complement
subject: Boussinesq equations
subject: fluid flow problems
classificationCode: 5
subject: Natural Sciences and Mathematics::510: Mathematics

description: We develop and analyze low-rank updates for preconditioners that are based on a (randomized) low-rank approximation of the error between the identity matrix and the preconditioned matrix. The low-rank updates are applied to different components of a block preconditioner for saddle-point systems that arise in the simulation of the rotating Boussinesq equations. A relaxation parameter improves the initial preconditioner as well as the low-rank updates. We analyze the complexity of the construction and application for different update schemes. An error analysis explains why low-rank corrections may deteriorate a given preconditioner. Numerical experiments illustrate the impact of various parameters on the effectiveness of the low-rank updates.
description: Wir entwickeln Niedrigrangupdates für Vorkonditionierer für Sattelpunktprobleme, die aus der Simulation von Boussinesq-Gleichungen stammen. Die Updates basieren auf einer Niedrigrangapproximation des Fehlers zwischen der Identitätsmatrix und der vorkonditionierten Matrix und werden auf verschiedene Komponenten eines Blockvorkonditionierers angewandt. Ein Relaxationsparameter verbessert den Blockvorkonditionierer signi kant. Wir analysieren den Rechenaufwand der Anwendung und Konstruktion der Updatestrategien. Eine Fehleranalyse erklärt, warum die Updates den ursprünglichen Vorkonditionierer nicht immer verbessern. Numerische Experimente zeigen, wie die E ektivität der Updates von diversen Parametern abhängt.
sj-docx-1-smo-10.1177_20503121221126762 – Supplemental material for Pediatric first aid, trauma knowledge, and attitude among parents and general population in Aseer region, Southern Saudi Arabia
Creators: name: Wani, Javed Iqbal
name: Almushayt, Nouf Omar
name: Abbag, Wejdan Fuad
name: Buhran, Lama Ali
name: Nadeem, Mir
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 111708 Health and Community Services
subject: FOS: Health sciences
subject: Cardiology
subject: 110599 Dentistry not elsewhere classified
subject: FOS: Clinical medicine
subject: 110305 Emergency Medicine
subject: 110306 Endocrinology
subject: 110308 Geriatrics and Gerontology
subject: 110904 Neurology and Neuromuscular Diseases
subject: 111099 Nursing not elsewhere classified
subject: 111199 Nutrition and Dietetics not elsewhere classified
subject: 111299 Oncology and Carcinogenesis not elsewhere classified
subject: 110314 Orthopaedics
subject: 110604 Sports Medicine
subject: 110315 Otorhinolaryngology
subject: 111702 Aged Health Care
subject: 111403 Paediatrics
subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: 111799 Public Health and Health Services not elsewhere classified
subject: 110203 Respiratory Diseases
subject: 160807 Sociological Methodology and Research Methods
subject: FOS: Sociology
subject: 110323 Surgery
subject: 70706 Veterinary Medicine
subject: FOS: Veterinary sciences

description: Supplemental material, sj-docx-1-smo-10.1177_20503121221126762 for Pediatric first aid, trauma knowledge, and attitude among parents and general population in Aseer region, Southern Saudi Arabia by Javed Iqbal Wani, Nouf Omar Almushayt, Wejdan Fuad Abbag, Lama Ali Buhran and Mir Nadeem in SAGE Open Medicine
Data from: Re-examination of species limits in Aspergillus section Flavipedes using advanced species delimitation methods and description of four new species
Creators: name: Sklenář, František
name: Jurjević, Željko
name: Houbraken, Jos
name: Kolařík, Miroslav
name: Arendrup, Maiken Cavling
name: Jørgensen, Karin Meinike
name: Siqueira, Joao Paulo Zen
name: Gené, Josepa
name: Yaguchi, Takashi
name: Ezekiel, Chibundu Ngozi
name: Pereira, Cristina Silva
name: Hubka, Vít
Publisher: name: Zenodo
Year: 2021

description: Since the last revision in 2015, the taxonomy of section Flavipedes evolved rapidly along with the availability of new species delimitation techniques. This study aims to re-evaluate the species boundaries of section Flavipedes members using modern delimitation methods applied to an extended set of strains (n=90) collected from various environments. The analysis used DNA sequences of three house-keeping genes (benA, CaM, RPB2) and consisted of two steps: application of several single-locus (GMYC, bGMYC, PTP, bPTP) and multi-locus (STACEY) species delimitation methods to sort the isolates into putative species, which were subsequently validated using DELINEATE software that was applied for the first time in fungal taxonomy. As a result, four new species are introduced, i.e. A. alboluteus, A. alboviridis, A. inusitatus and A. lanuginosus, and A. capensis is synonymized with A. iizukae. Phenotypic analyses were performed for the new species and their relatives and the results showed that the growth parameters at different temperatures and colonies characteristics were useful for differentiation of these taxa. The revised section harbors 18 species, most of them are known from soil. However, common species from the section are ecologically diverse, occurring in indoor environment (6 species), clinical samples (5 species), food and feed (4 species), droppings (4 species) and other less common substrates/environments. Due to the occurrence of section Flavipedes species in the clinical material/hospital environment, we also evaluated the susceptibility of 66 strains to six antifungals (Amphotericin B, Itraconazole, Posaconazole, Voriconazole, Isavuconazole, Terbinafine) using the reference EUCAST method. These results showed some potentially clinically relevant differences in susceptibility between species. For example, MICs higher than those observed for wild-type A. fumigatus were found for both triazoles and amphotericin B for A. ardalensis, A. iizukae, and A. spelaeus whereas A. lanuginosus, A. luppiae, A. movilensis, A. neoflavipes, and A. olivimuriae were comparable to or more susceptible as A. fumigatus. Finally, terbinafine was in vitro active against all species except A. alboviridis.
sj-pdf-1-ajl-10.1177_15598276231175396 – Supplemental Material for Characterization of Gaming-Related Symptoms and Musculoskeletal Pain Complaints in Individuals Who Participate in Electronic Gaming
Creators: name: Geer, Roderick
name: Cheng, Jennifer
name: Rothman, Rachel
name: Abutalib, Zafir
name: Davenport, Kathleen
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: 111099 Nursing not elsewhere classified
subject: FOS: Health sciences
subject: 111199 Nutrition and Dietetics not elsewhere classified
subject: 111799 Public Health and Health Services not elsewhere classified

description: Supplemental Material, sj-pdf-1-ajl-10.1177_15598276231175396 for Characterization of Gaming-Related Symptoms and Musculoskeletal Pain Complaints in Individuals Who Participate in Electronic Gaming by Roderick Geer, MD, Jennifer Cheng, PhD , Rachel Rothman, BA, Zafir Abutalib, MHS, and Kathleen Davenport, MD in American Journal of Lifestyle Medicine