cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1: of Anglemetry of neural axis cell differentiation genes by structural pressurotopy of DNA loop strand segment tropy in reference to tissue macro-compliance
Creators: name: Sarin, Hemant
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Table S1. Sequential episodic sub-episode block sum split-integrated weighted average gene overexpression tropy quotients to final esebssiwaagoTQ for predicted neural axis gene overexpression 1) Gene loci sub-episode block structure variations include non-contributory anisotropy (NCA), anisotropy converted to mesotropy (ACM), and/or 0.5-factor adjusted stabilizing mesotropy or anisotropy converted to stabilizing isotropy for anisotropy or mesotropy (stIAfM, stIMfA or stIMfM) that result in an initial to final SEB conversion; and 2) previously reported episode and sub-episode block structure is applied in all cases as per reference [25], in which gene/gene loci at cusps of the delineated base intervals, SHANK2 (784,883), RBFOX3 (521,757) classify into the adjacent interval. (DOC 66 kb)
Electron-phonon interaction in a two-subband quasi-2D system in a quantizing magnetic field
Creators: name: Apalkov, V. M.
name: Portnoi, M. E.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We predict a double-resonant feature in the magnetic field dependence of the phonon-mediated mobility of a two-subband quasi-two-dimensional electron system. These resonances take place when two Landau levels corresponding to different size-quantized subbands are close to each other but do not coincide. We also discuss the effect of non-equilibrium phonons. Rabi-like oscillations of electron population and emission of the phonons at new frequencies are predicted.
description: 4 pages, 1 figure
Margarya monodi
Creators: name: Zhang, Le-Jia
name: Chen, Shi-Chao
name: Yang, Li-Te
name: Jin, Lei
name: Köhler, Frank
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Architaenioglossa
Viviparidae
Margarya
Margarya monodi

description: MARGARYA MONODI (DAUTZENBERG & FISCHER, 1905)
(FIG. 17)
 Margarya melanioides var. monodi Dautzenberg & Fischer, 1905: 424, fig. 1 (Quaternary strata of ‘Koui- An’ = Kunyang, Jinning County, Kunming City, Yunnan Province, China); Kobelt, 1909: 192, pl. 37, fig. 3.
description: Published as part of Zhang, Le-Jia, Chen, Shi-Chao, Yang, Li-Te, Jin, Lei & Köhler, Frank, 2015, Systematic revision of the freshwater snail Margarya Nevill, 1877 (Mollusca: Viviparidae) endemic to the ancient lakes of Yunnan, China, with description of new taxa, pp. 760-800 in Zoological Journal of the Linnean Society 174 (4) on page 780, DOI: 10.1111/zoj.12260, http://zenodo.org/record/10107688
Bose-Einstein Condensates in Magnetic Waveguides
Creators: name: Fortagh, J.
name: Ott, H.
name: Kraft, S.
name: Guenther, A.
name: Zimmermann, C.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: In this article, we describe an experimental system for generating Bose-Einstein condensates and controlling the shape and motion of the condensate by using miniaturised magnetic potentials. In particular, we describe the magnetic trap setup, the vacuum system, the use of dispenser sources for loading a high number of atoms into the magneto-optical trap, the magnetic transfer of atoms into the microtrap, and the experimental cycle for generating Bose-Einstein condensates. We present first results on outcoupling of condensates into a magnetic waveguide and discuss influences of the trap surface on the ultracold ensembles.
description: 8 pages, 9 figures
Thermosize voltage induced in a ballistic graphene nanoribbon junction
Creators: name: Aydin, Alhun
name: Fransson, Jonas
name: Sisman, Altug
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: A thermoelectric voltage is induced in a junction, constituted of two dissimilar materials under a temperature gradient. Similarly, a thermosize voltage is expected to be induced in a junction made by the same material but having different sizes, so-called thermosize junction. This is a consequence of dissimilarity in Seebeck coefficients due to differences in classical and/or quantum size effects in the same materials with different sizes. The studies on thermosize effects in literature are mainly based on semi-classical models under relaxation time approximation or even simpler local equilibrium ones where only very general ideas and results have been discussed without considering quantum transport approaches and specific materials. To make more realistic predictions for a possible experimental verification, here, we consider ballistic thermosize junctions made by narrow and wide ($n$-$w$) pristine graphene nanoribbons with perfect armchair edges and calculate the electronic contribution to the thermosize voltage, at room temperature, by using the Landauer formalism. The results show that the maximum thermosize voltage can be achieved for semiconducting nanoribbons and it is about an order of magnitude larger than that of metallic nanoribbons. In the semiconducting case, the thermosize voltage forms a characteristic plateau for a finite range of gating conditions. We demonstrate, through numerical calculations, that the induced thermosize voltage per temperature difference can be in the scale of mV/K, which is high enough for experimental measurements. Owing to their high and persistent thermosize voltage values, graphene nanoribbons are expected to be good candidate for device applications of thermosize effects.
description: 5 pages, 4 figures
Frequency smoothed robust Capon beamformer applied to medical ultrasound imaging
Creators: name: Long, Xian
Publisher: name: The Australian National University
Year: 2014
Subjects: Array Signal Processing
Robust Capon Beamforming
Biomedical Ultrasound Imaging

description: Recently, adaptive array beamforming has been applied to medical ultrasound imaging and achieved promising performance improvement. However, the current robust Capon beamformer with spatial smoothing (RCB-SS) is implemented in the time domain, which does not fully utilise the large bandwidth of ultrasound signals and spatial smoothing reduces the effective aperture. In this dissertation, we propose a robust Capon beamformer with frequency smoothing (RCB-FS) and compare its performance with RCB-SS. To further reduce the speckle noise and utilise the large bandwidth of the signal, we combine RCB-FS and frequency com- pounding (FC) and propose a robust Capon beamformer with frequency smoothing combined with frequency compounding (RCB-FS-FC). The proposed RCB-FS method shows a narrower mainlobe width, lower sidelobes, better reconstruction at higher depths and less speckle than RCB-SS. FC is an e ective method to improve the contrast resolution and suppress speckle noise by combining sub-band images, at the expense of resolution. Compared to standard FC, the proposed RCB-FS-FC method has a better contrast resolution and speckle reduction and a significant improvement in resolution. RCB-FS offers a promising approach to find the optimal weights for the transducers in forming the sub-band images needed for frequency compounding.
Error-corrected gates on an encoded qubit
Creators: name: Reinhold, Philip
name: Rosenblum, Serge
name: Ma, Wen-Long
name: Frunzio, Luigi
name: Jiang, Liang
name: Schoelkopf, Robert J.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: Applied Physics (physics.app-ph)
subject: FOS: Physical sciences

description: To solve classically hard problems, quantum computers need to be resilient to the influence of noise and decoherence. In such a fault-tolerant quantum computer, noise-induced errors must be detected and corrected in real-time to prevent them from propagating between components. This requirement is especially pertinent while applying quantum gates, when the interaction between components can cause errors to quickly spread throughout the system. However, the large overhead involved in most fault-tolerant architectures makes implementing these systems a daunting task, which motivates the search for hardware-efficient alternatives. Here, we present a gate enacted by a multilevel ancilla transmon on a cavity-encoded logical qubit that is fault-tolerant with respect to decoherence in both the ancilla and the encoded qubit. We maintain the purity of the encoded qubit in the presence of ancilla errors by detecting those errors in real-time, and applying the appropriate corrections. We show a reduction of the logical gate error by a factor of two in the presence of naturally occurring decoherence, and demonstrate resilience against ancilla bit-flips and phase-flips by observing a sixfold suppression of the gate error with increased energy relaxation, and a fourfold suppression with increased dephasing noise. The results demonstrate that bosonic logical qubits can be controlled by error-prone ancilla qubits without inheriting the ancilla's inferior performance. As such, error-corrected ancilla-enabled gates are an important step towards fully fault-tolerant processing of bosonic qubits.
description: 15 pages, 8 figures
Integrable cases of gravitating static isothermal fluid spheres
Creators: name: Ivanov, B. V.
Publisher: name: arXiv
Year: 2001
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: It is shown that different approaches towards the solution of the Einstein equations for a static spherically symmetric perfect fluid with a gamma-law equation of state lead to an Abel differential equation of the second kind. Its only integrable cases at present are flat spacetime, de Sitter solution and its Buchdahl transform, Einstein static universe and the Klein-Tolman solution.
description: 13 pages, revtex
On the gauge orbit space stratification (a review)
Creators: name: Rudolph, G.
name: Schmidt, M.
name: Volobuev, I. P.
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: First, we review the basic mathematical structures and results concerning the gauge orbit space stratification. This includes general properties of the gauge group action, fibre bundle structures induced by this action, basic properties of the stratification and the natural Riemannian structures of the strata. In the second part, we study the stratification for theories with gauge group $\rmSU(n)$ in space time dimension 4. We develop a general method for determining the orbit types and their partial ordering, based on the 1-1 correspondence between orbit types and holonomy-induced Howe subbundles of the underlying principal $\rmSU(n)$-bundle. We show that the orbit types are classified by certain cohomology elements of space time satisfying two relations and that the partial ordering is characterized by a system of algebraic equations. Moreover, operations for generating direct successors and direct predecessors are formulated, which allow one to construct the set of orbit types, starting from the principal one. Finally, we discuss an application to nodal configurations in topological Chern-Simons theory.
description: 63 pages
Additional file 9: of Genome comparison between clinical and environmental strains of Herbaspirillum seropedicae reveals a potential new emerging bacterium adapted to human hosts
Creators: name: Helisson Faoro
name: Oliveira, Willian
name: Weiss, Vinicius
name: Tadra-Sfeir, Michelle
name: Cardoso, Rodrigo
name: Balsanelli, Eduardo
name: Liziane Brusamarello-Santos
name: Doumit Camilios-Neto
name: Cruz, Leonardo
name: Raittz, Roberto
name: Marques, Ana
name: LiPuma, John
name: Fadel-Picheth, Cyntia
name: Souza, Emanuel
name: Pedrosa, Fabio
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Table S4. Genomic islands of AU14040 strains predicted as â strongâ . (DOCX 83 kb)
Cornu BORN 1778
Creators: name: Hausdorf, Bernhard
name: Bamberger, Sonja
name: Walther, Frank
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Stylommatophora
Helicidae
Cornu

description: GENUS CORNU BORN, 1778
 Type species by monotypy: Cornu copiae Born, 1778 = Helix aspersa Müller, 1774 (see also: ICZN, 2015).
description: Published as part of Hausdorf, Bernhard, Bamberger, Sonja & Walther, Frank, 2021, A Sicilian-Cretan biogeographical disjunction in the land snail genus Cornu (Gastropoda: Helicidae), pp. 59-74 in Zoological Journal of the Linnean Society 192 on page 65
The shear dynamics in Bianchi I cosmological model on the brane
Creators: name: Toporensky, A. V.
Publisher: name: arXiv
Year: 2001
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The shear dynamics in Bianchi I cosmological model on the brane with a perfect fluid (the equation of state is $p=(γ-1) μ$) is studied. It is shown that for $1 < γ< 2$ the shear parameter has maximum at some moment during a transition period from nonstandard to standard cosmology. An exact formula for the matter density $μ$ in the epoch of maximum shear parameter as a function of the equation of state is obtained.
description: 7 pages, no figures; some comments and references added; submitted to Class. Quant. Gravity
Black hole mass estimation for Active Galactic Nuclei from a new angle
Creators: name: Baron, Dalya
name: Ménard, Brice
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: The scaling relations between supermassive black holes and their host galaxy properties are of fundamental importance in the context black hole-host galaxy co-evolution throughout cosmic time. In this work, we use a novel algorithm that identifies smooth trends in complex datasets and apply it to a sample of 2,000 type I active galactic nuclei (AGN) spectra. We detect a sequence in emission line shapes and strengths which reveals a correlation between the narrow L([OIII])/L(H$β$) line ratio and the width of the broad H$α$. This scaling relation ties the kinematics of the gas clouds in the broad line region to the ionisation state of the narrow line region, connecting the properties of gas clouds kiloparsecs away from the black hole to material gravitationally bound to it on sub-parsec scales. This relation can be used to estimate black hole masses from narrow emission lines only. It therefore enables black hole mass estimation for obscured type II AGN and allows us to explore the connection between black holes and host galaxy properties for thousands of objects, well beyond the local Universe. Using this technique, we present the $M_{\mathrm{BH}} - σ$ and $M_{\mathrm{BH}} - M_{*}$ scaling relations for a sample of about 10,000 type II AGN from SDSS. These relations are remarkably consistent with those observed for type I AGN, suggesting that this new method may perform as reliably as the classical estimate used in non-obscured type I AGN. These findings open a new window for studies of black hole-host galaxy co-evolution throughout cosmic time.
description: to be submitted to MNRAS, comments are welcome!
Cornu (Erctella) Monterosato 1894
Creators: name: Hausdorf, Bernhard
name: Bamberger, Sonja
name: Walther, Frank
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Stylommatophora
Helicidae
Cornu

description: SUBGENUS ERCTELLA MONTEROSATO, 1894
 Type species by subsequent designation (Barker, 1999: 62): Helix mazzullii De Cristofori & Jan, 1832.
 Remarks: Colomba et al. (2011) stated that the type species of Erctella was designated by Pilsbry (1895: 316). However, Pilsbry (1895) only mentioned that Erctella was established ‘for H. mazzullii ’ and missed that Monterosato (1894) included Helix (Erctella) costae Benoit, 1857 as a second nominal species in Erctella or considered this unimportant because he included H. costae in the synonymy of H. mazzullii. This does not constitute a valid type species designation (see also: Welter-Schultes, 2012). Welter-Schultes (2012) suggested that Schileyko (2006) was the first to designate the type species of Erctella. However, this had already been done by Barker (1999). It does not matter that Barker (1999) erroneously thought that H. mazzullii is the type species of Erctella by monotypy [as Schileyko (2006) also did; ICZN, 1999: Article 69.1.1].
description: Published as part of Hausdorf, Bernhard, Bamberger, Sonja & Walther, Frank, 2021, A Sicilian-Cretan biogeographical disjunction in the land snail genus Cornu (Gastropoda: Helicidae), pp. 59-74 in Zoological Journal of the Linnean Society 192 on page 65
Margarya melanioides subsp. monodi Dautzenberg & Fischer 1905
Creators: name: Zhang, Le-Jia
name: Chen, Shi-Chao
name: Yang, Li-Te
name: Jin, Lei
name: Köhler, Frank
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Architaenioglossa
Viviparidae
Margarya
Margarya melanioides
Margarya melanioides monodi

description: Margarya melanioides monodi – Yen, 1939: 128.
 Margarya monodi – Tchang & Tsi, 1949: 745–747, pl. 1, figs 7–8; Xia, 1982: figs 5–6; Zhang, 1986b: 152–154, pl. 4, fig. middle; Zhang, 1993: pl. 2, fig. 18; Zhang et al., 1995: 178–179; Wang, 2005: fig. 1.2; Liu & Wu, 2005: 299–300; Du et al., 2013: fig. 2C; He, 2013: 10, figs 18–22.
 Margarya elongata Tchang & Tsi, 1949: 747, pl. 1, figs 13–14 (Lake Dianchi); Pan, 1984: 117–118, pl. 2, figs 2–4; Zhang, 1986b: 152–154, pl. 4, fig. right; Zhang, 1993: pl. 2, figs 13, 16, 17; Zhang et al., 1995: 178–179; Liu & Wu, 2005: 299–300; Du et al., 2013: fig. 2I.
 Margarya elongata var. yini Tchang & Tsi, 1949: 748, pl. 2, figs 15–16 (Lake Dianchi).
 Margarya elongata yini – Liu et al., 1995: 14.
 Margarya yini – Xia 1982: 340; Zhang et al., 1995: 178–179; Liu & Wu, 2005: 299–300; Du et al., 2013: fig. 2J.
 Margarya tchangsii Xia, 1982: 344–345, figs 1–4 (Lake Dianchi); Zhang et al., 1995: 178–179; Liu & Wu, 2005: 299–300; Du et al., 2013: fig. 2K.
 Margarya melanioides (type B, type D) – Zhang, 1986a: 66–67, pl. 1, figs 4, 5; Du et al., 2013: fig. 2B(b), (d).
description: Published as part of Zhang, Le-Jia, Chen, Shi-Chao, Yang, Li-Te, Jin, Lei & Köhler, Frank, 2015, Systematic revision of the freshwater snail Margarya Nevill, 1877 (Mollusca: Viviparidae) endemic to the ancient lakes of Yunnan, China, with description of new taxa, pp. 760-800 in Zoological Journal of the Linnean Society 174 (4) on pages 780-781, DOI: 10.1111/zoj.12260, http://zenodo.org/record/10107688
An Experiment with a User Manual of a Programming Language Based on a Denotational Semantics
Creators: name: Blikle, Andrzej
Publisher: name: arXiv
Year: 2019
Subjects: subject: Programming Languages (cs.PL)
subject: FOS: Computer and information sciences
subject: 68N30

description: Denotational models should provide an opportunity for the revision of current practices seen in the manuals of programming languages. New styles should on one hand base on denotational models but on the other - do not assume that today readers are acquainted in this field. A manual should, therefore, provide some basic knowledge and notation needed to understand the definition of a programming language written in a new style. At the same time - I strongly believe that - it should be written for professional programmers rather than for amateurs. The role of a manual is not to teach the skills of programming. Such textbooks are, of course, necessary, but they should tell the readers what the programming is about rather than the technicalities of a concrete language. The paper contains an example of a manual for a virtual programming language Lingua developed in our project.
description: 47 pages. This paper is based on my preprinted book 'A Denotational Engineering of Programming Languages' (available on arXiv:1905.01473), which describes a virtual programming language whose manual is discussed in the paper. To make the paper possibly self-contained large parts of the book are quoted in the paper. arXiv admin note: substantial text overlap with arXiv:1905.01469
Additional file 7: of Genome comparison between clinical and environmental strains of Herbaspirillum seropedicae reveals a potential new emerging bacterium adapted to human hosts
Creators: name: Helisson Faoro
name: Oliveira, Willian
name: Weiss, Vinicius
name: Tadra-Sfeir, Michelle
name: Cardoso, Rodrigo
name: Balsanelli, Eduardo
name: Liziane Brusamarello-Santos
name: Doumit Camilios-Neto
name: Cruz, Leonardo
name: Raittz, Roberto
name: Marques, Ana
name: LiPuma, John
name: Fadel-Picheth, Cyntia
name: Souza, Emanuel
name: Pedrosa, Fabio
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Figure S5. Identification of orthologous proteins in H. seropedicae strains. Venn diagram of orthologous proteins between clinical and environmental strains of Herbaspirillum seropedicae. The theoretical proteomes of all strains were compared to each other using blastp. From the blastp results, SRV was calculated. The master SRV cutoff used for clustering was 33. The analysis was performed with the EDGAR software platform. (DOCX 194 kb)
Corner transfer matrix renormalization group method for two-dimensional self-avoiding walks and other O(n) models
Creators: name: Foster, D. P.
name: Pinettes, C.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We present an extension of the corner transfer matrix renormalisation group (CTMRG) method to O(n) invariant models, with particular interest in the self-avoiding walk class of models (O(n=0)). The method is illustrated using an interacting self-avoiding walk model. Based on the efficiency and versatility when compared to other available numerical methods, we present CTMRG as the method of choice for two-dimensional self-avoiding walk problems.
description: 4 pages 7 figures Substantial rewrite of previous version to include calculations of critical points and exponents. Final version accepted for publication in PRE (Rapid Communications)
Additional file 8: of Genome comparison between clinical and environmental strains of Herbaspirillum seropedicae reveals a potential new emerging bacterium adapted to human hosts
Creators: name: Helisson Faoro
name: Oliveira, Willian
name: Weiss, Vinicius
name: Tadra-Sfeir, Michelle
name: Cardoso, Rodrigo
name: Balsanelli, Eduardo
name: Liziane Brusamarello-Santos
name: Doumit Camilios-Neto
name: Cruz, Leonardo
name: Raittz, Roberto
name: Marques, Ana
name: LiPuma, John
name: Fadel-Picheth, Cyntia
name: Souza, Emanuel
name: Pedrosa, Fabio
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Table S3. Comparison of the theoretical proteome of H. seropedicae strains with the ResFam antibiotic resistance gene database. (DOCX 49 kb)
Properties of r modes in rotating magnetic neutron stars. I. Kinematic Secular Effects and Magnetic Evolution Equations
Creators: name: Rezzolla, Luciano
name: Lamb, Frederick L.
name: Markovic, Dragoljub
name: Shapiro, Stuart L.
Publisher: name: arXiv
Year: 2001
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The instability of r-mode oscillations in rapidly rotating neutron stars has attracted attention as a potential mechanism for producing high frequency, almost periodic gravitational waves. The analyses carried so far have shown the existence of these modes and have considered damping by shear and bulk viscosity. However, the magnetohydrodynamic coupling of the modes with a stellar magnetic field and its role in the damping of the instability has not been fully investigated yet. Following our introductory paper (Rezzolla, Lamb and Shapiro 2000), we here discuss in more detail the existence of secular higher-order kinematical effects which will produce toroidal fluid drifts. We also define the sets of equations that account for the time evolution of the magnetic fields produced by these secular velocity fields and show that the magnetic fields produced can reach equipartition in less than a year. The full numerical calculations as well as the evaluation of the impact of strong magnetic fields on the onset and evolution of the r-mode instability will be presented in a companion paper.
description: 15 pages, 4 figures. To appear in Phys. Rev. D
Algebraically special, expanding and twisting gravitational fields with vanishing NUT parameter
Creators: name: Ivanov, B. V.
Publisher: name: arXiv
Year: 2001
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: The system of Einstein-Maxwell equations for fields mentioned in the title is simplified. Known pure radiation solutions are systematized and new solutions are given by separating the variables.
description: revtex
A crystal to rigged configuration bijection for nonexceptional affine algebras
Creators: name: Okado, Masato
name: Schilling, Anne
name: Shimozono, Mark
Publisher: name: arXiv
Year: 2002
Subjects: subject: Quantum Algebra (math.QA)
subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: 17B37; 82B23; 05A19; 81R50; 05E15

description: Kerov, Kirillov, and Reshetikhin defined a bijection between highest weight vectors in the crystal graph of a tensor power of the vector representation, and combinatorial objects called rigged configurations, for type $A^{(1)}_n$. We define an analogous bijection for all nonexceptional affine types, thereby proving (in this special case) the fermionic formulas conjectured by Hatayama, Kuniba, Takagi, Tsuboi, Yamada, and the first author.
description: 34 pages; axodraw.sty file required
Statistical mechanics of screened spatially indirect excitons
Creators: name: Nikolaev, V. V.
name: Portnoi, M. E.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We study thermodynamic properties of spatially separated electron-hole plasma in double-layered systems using Green function formalism. The screening of the Coulomb interaction is considered in the framework of Thomas-Fermi approximation, and a qualitatively new mechanism of screening by indirect excitons is taken into account. The exciton density is shown to decrease sharply with increasing electron-hole separation up to one exciton Born radius. The strong mutual enhancement of screening and charge-separation effects is found.
description: 6 pages, 2 figures
Observation of Chiral Surface Excitons in a Topological Insulator Bi$_2$Se$_3$
Creators: name: Kung, H. -H.
name: Goyal, A. P.
name: Maslov, D. L.
name: Wang, X.
name: Lee, A.
name: Kemper, A. F.
name: Cheong, S. -W.
name: Blumberg, G.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The protected electron states at the boundaries or on the surfaces of topological insulators (TIs) have been the subject of intense theoretical and experimental investigations. Such states are enforced by very strong spin-orbit interaction in solids composed of heavy elements. Here, we study the composite particles -- chiral excitons -- formed by the Coulomb attraction between electrons and holes residing on the surface of an archetypical three-dimensional topological insulator (TI), Bi$_2$Se$_3$. Photoluminescence (PL) emission arising due to recombination of excitons in conventional semiconductors is usually unpolarized because of scattering by phonons and other degrees of freedom during exciton thermalization. On the contrary, we observe almost perfectly polarization-preserving PL emission from chiral excitons. We demonstrate that the chiral excitons can be optically oriented with circularly polarized light in a broad range of excitation energies, even when the latter deviate from the (apparent) optical band gap by hundreds of meVs, and that the orientation remains preserved even at room temperature. Based on the dependences of the PL spectra on the energy and polarization of incident photons, we propose that chiral excitons are made from massive holes and massless (Dirac) electrons, both with chiral spin textures enforced by strong spin-orbit coupling. A theoretical model based on such proposal describes quantitatively the experimental observations. The optical orientation of composite particles, the chiral excitons, emerges as a general result of strong spin-orbit coupling in a 2D electron system. Our findings can potentially expand applications of TIs in photonics and optoelectronics.
description: 22 pages, 11 figures
Burmadryinus Olmi & Xu & Guglielmino 2014, gen. nov.
Creators: name: Olmi, Massimo
name: Xu, Zaifu
name: Guglielmino, Adalgisa
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Dryinidae
Burmadryinus

description: Burmadryinus gen. nov.
 Type species. Burmadryinus cenomanianus sp. nov., present designation.
  Diagnosis. Male  (Fig. 2). As for the subfamily (see above).
  Female.  Unknown.
 Etymology. Burmadryinus is a compound noun formed from Burma (the former name of Myanmar, where Burmese amber is collected) and Dryinus (type genus of the family Dryinidae); gender is masculine.
 Distribution. Only known from Burmese amber.
description: Published as part of Olmi, Massimo, Xu, Zaifu & Guglielmino, Adalgisa, 2014, Descriptions of new fossil taxa of Dryinidae (Hymenoptera: Chrysidoidea) from Burmese amber (Myanmar), pp. 703-714 in Acta Entomologica Musei Nationalis Pragae 54 (2) on page 709, DOI: 10.5281/zenodo.5300818
Criticality and finite size effects in a simple realistic model of stock market
Creators: name: Challet, Damien
name: Marsili, Matteo
Publisher: name: arXiv
Year: 2002
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Trading and Market Microstructure (q-fin.TR)
subject: FOS: Physical sciences
subject: FOS: Economics and business

description: We discuss a simple model based on the Minority Game which reproduces the main stylized facts of anomalous fluctuations in finance. We present the analytic solution of the model in the thermodynamic limit and show that stylized facts arise only close to a line of critical points with non-trivial properties. By a simple argument, we show that, in Minority Games, the emergence of critical fluctuations close to the phase transition is governed by the interplay between the signal to noise ratio and the system size. These results provide a clear and consistent picture of financial markets as critical systems.
description: 4 pages, 4 figures
Pure-radiation gravitational fields with a simple twist and a Killing vector
Creators: name: Ivanov, B. V.
Publisher: name: arXiv
Year: 2001
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Pure-radiation solutions are found, exploiting the analogy with the Euler- Darboux equation for aligned colliding plane waves and the Euler-Tricomi equation in hydrodynamics of two-dimensional flow. They do not depend on one of the spacelike coordinates and comprise the Hauser solution as a special subcase.
description: revtex, 9 pages
Oxidation of Monolayer WS$_{2}$ in Ambient is a Photoinduced Process
Creators: name: Kotsakidis, Jimmy C.
name: Zhang, Quianhui
name: de Parga, Amadeo L. Vazquez
name: Currie, Marc
name: Helmerson, Kristian
name: Gaskill, D. Kurt
name: Fuhrer, Michael S.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Applied Physics (physics.app-ph)
subject: Materials Science (cond-mat.mtrl-sci)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We have studied the ambient air oxidation of chemical vapor deposition (CVD) grown monolayers of the semiconducting transition metal dichalcogenide (S-TMD) WS$_{2}$ using optical microscopy, laser scanning confocal microscopy (LSCM), photoluminescence (PL) spectroscopy, and atomic force microscopy (AFM). Monolayer WS$_{2}$ exposed to ambient conditions in the presence of light (typical laboratory ambient light for weeks, or typical PL spectroscopy map), exhibits damage due to oxidation which can be detected with the LSCM and AFM; though may not be evident in conventional optical microscopy due to poorer contrast and resolution. Additionally, this oxidation was not random, and correlated with 'high-symmetry' and red-shifted areas in the PL spectroscopy map - areas thought to contain a higher concentration of sulfur vacancies. In contrast, samples kept in ambient and darkness showed no signs of oxidation for up to 10 months. Low-irradiance/fluence experiments showed that samples subjected to excitation energies at or above the trion excitation energy (532 nm/2.33 eV and 660 nm/1.88 eV) oxidized in as little as 7 days, even for irradiances and fluences eight and four orders of magnitude lower (respectively) than previously reported. No significant oxidation was observed for 760 nm/1.63 eV light exposure, which lies below the trion excitation energy in WS$_{2}$. The strong wavelength dependence and apparent lack of irradiance dependence suggests that ambient oxidation of WS$_{2}$ is initiated by photon-mediated electronic band transitions, that is, photo-oxidation. These findings have important implications for prior, present and future studies concerning S-TMDs measured, stored or manipulated in ambient conditions.
description: 35 pages, 3 figures, 1 table, submitted to ACS Nano Letters
Properties of r modes in rotating magnetic neutron stars. II. Evolution of the r modes and stellar magnetic field
Creators: name: Rezzolla, Luciano
name: Lamb, Frederick L.
name: Markovic, Dragoljub
name: Shapiro, Stuart L.
Publisher: name: arXiv
Year: 2001
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The evolution of the r-mode instability is likely to be accompanied by secular kinematic effects which will produce differential rotation with large scale drifts of fluid elements, mostly in the azimuthal direction. As first discussed by Rezzolla, Lamb and Shapiro 2000, the interaction of these secular velocity fields with a pre-existing neutron star magnetic field could result in the generation of intense and large scale toroidal fields. Following their derivation in the companion paper, we here discuss the numerical solution of the evolution equations for the magnetic field. The values of the magnetic fields obtained in this way are used to estimate the conditions under which the r-mode instability might be prevented or suppressed. We also assess the impact of the generation of large magnetic fields on the gravitational wave detectability of r-mode unstable neutron stars. Our results indicate that the signal to noise ratio in the detection of gravitational waves from the r-mode instability might be considerably decreased if the latter develops in neutron stars with initial magnetic fields larger than 10^10 G.
description: 16 pages, 12 figures. To appear in Phys. Rev. D
Additional file 5: of Genome comparison between clinical and environmental strains of Herbaspirillum seropedicae reveals a potential new emerging bacterium adapted to human hosts
Creators: name: Helisson Faoro
name: Oliveira, Willian
name: Weiss, Vinicius
name: Tadra-Sfeir, Michelle
name: Cardoso, Rodrigo
name: Balsanelli, Eduardo
name: Liziane Brusamarello-Santos
name: Doumit Camilios-Neto
name: Cruz, Leonardo
name: Raittz, Roberto
name: Marques, Ana
name: LiPuma, John
name: Fadel-Picheth, Cyntia
name: Souza, Emanuel
name: Pedrosa, Fabio
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Figure S3. Multiple sequence alignment of NRPS. The amino acid sequences of the NRPS genes were aligned using Clustal Omega. (A) Additional condensation site region of AU13965. (B) Region of the thiolation site absent in strain AU13965. (DOCX 207 kb)
Puzzle geometry and rigidity: The Fibonacci cycle is hyperbolic
Creators: name: Smania, Daniel
Publisher: name: arXiv
Year: 2002
Subjects: subject: Dynamical Systems (math.DS)
subject: Complex Variables (math.CV)
subject: FOS: Mathematics
subject: 37F30, 37C15, 30C62, 30C65, 37F25, 37F45, 37E20

description: We describe a new and robust method to prove rigidity results in complex dynamics. The new ingredient is the geometry of the critical puzzle pieces: under control of geometry and ``complex bounds'', two generalized polynomial-like maps which admits a topological conjugacy, quasiconformal outside the filled-in Julia set are, indeed, quasiconformally conjugated. The proof uses a new abstract removability-type result for quasiconformal maps, following ideas of Heinonen & Koskela and Kallunki & Koskela, optimized to complex dynamics. As the first application to this new method, we prove that, for even criticalities distinct of two, the period two cycle of the Fibonacci renormalization operator is hyperbolic with one-dimensional unstable manifold. To derive the exponential contraction in the hybrid classes, we use the non existence of invariant line fields in the Fibonacci tower, the topological convergence (both results by van Strien & Nowicki) and a new argument, distinct of the C. McMullen and M. Lyubich previous methods in the classic renormalization operator theory. We also describe other future applications.
description: Some misprints were corrected, 47 pages, 7 figures
Additional file 2: of Implementation fidelity of provider-initiated HIV testing and counseling of tuberculosis patients under the National Tuberculosis Control Program in Kathmandu District of Nepal: an implementation research
Creators: name: Randeep Kumar
name: Probandari, Ari
name: Biwesh Ojha
name: Ashmin Bhattarai
name: Yanri Subronto
Publisher: name: figshare
Year: 2019
Subjects: subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Modified DOTS Center readiness assessment tool.Â (DOCX 31 kb)
On-chip generation and characterization of quantum light
Creators: name: Titchener, James
Publisher: name: The Australian National University
Year: 2017
Subjects: Photonics
Quantum
integrated photonics
quantum state tomography
quantum computing
quantum optics
optics
nonlinear optics

description: Technologies based on quantum mechanics promise to revolutionize the collection, processing and communication of information. However, due to the fragility of quantum coherence, complex quantum states can only exist in highly isolated and stable environments. One suitable environment is that of a quantum photonic chip. Quantum integrated photonics seeks to generate, process and detect complex quantum states inside a photonic chip. This thesis presents theory and experimental verification of novel approaches for the integration of various functionalities into quantum photonic chips in a scalable way. As such, this thesis encompasses a broad area of physics including quantum optics and nonlinear photonics. The results presented in this thesis have applications in the areas of quantum enhanced measurement, communication and information processing. In particular we develop the theory and experimentally demonstrate flexible on-chip sources of spatially entangled photons, the state of which can be reconfigured alloptically. We show how such techniques could enable the realization of simple cluster state quantum computing algorithms using spatially encoded two-photon states. Furthermore, we suggest new and practical approaches for the efficient characterization of mass produced nonlinear quantum photonic chips. Finally we develop and experimentally demonstrate a scalable method for the full quantum state tomography of multi-photon states on-chip. Importantly this technique only requires a linearly increasing number of single photon detectors relative to the number of photons in the state being characterized, and is also highly compatible with on-chip single photon detectors.
First-principles study of superconductivity in high-pressure Boron
Creators: name: Papaconstantopoulos, D. A.
name: Mehl, M. J.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We study superconductivity in Boron using first-principles LAPW calculations, the rigid-muffin-tin approximation and the McMillan theory. Our results point to an electron-phonon mechanism producing transition temperatures near 10K at high pressures in agreement with recent measurements.
description: 5 encapsulated Postscript figures, REVTEX4
Bogoliubov approach to superfluidity of atoms in an optical lattice
Creators: name: Rey, Ana Maria
name: Burnett, Keith
name: Roth, Robert
name: Edwards, Mark
name: Williams, Carl J.
name: Clark, Charles W.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We use the Bogoliubov theory of atoms in an optical lattice to study the approach to the Mott-insulator transition. We derive an explicit expression for the superfluid density based on the rigidity of the system under phase variations. This enables us to explore the connection between the quantum depletion of the condensate and the quasi-momentum distribution on the one hand and the superfluid fraction on the other. The approach to the insulator phase may be characterized through the filling of the band by quantum depletion, which should be directly observable via the matter wave interference patterns. We complement these findings by self-consistent Hartree-Fock-Bogoliubov-Popov calculations for one-dimensional lattices including the effects of a parabolic trapping potential.
description: 25 pages, 8 figures
Additional file 6: of Genome comparison between clinical and environmental strains of Herbaspirillum seropedicae reveals a potential new emerging bacterium adapted to human hosts
Creators: name: Helisson Faoro
name: Oliveira, Willian
name: Weiss, Vinicius
name: Tadra-Sfeir, Michelle
name: Cardoso, Rodrigo
name: Balsanelli, Eduardo
name: Liziane Brusamarello-Santos
name: Doumit Camilios-Neto
name: Cruz, Leonardo
name: Raittz, Roberto
name: Marques, Ana
name: LiPuma, John
name: Fadel-Picheth, Cyntia
name: Souza, Emanuel
name: Pedrosa, Fabio
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: Ecology
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Figure S4. Functional classification of Herbaspirillum strain genomes. Functional classification of proteins from clinical and environmental strains was made according to the KEGG categories through the algorithm BlastKOALA. The number of CDSs in each category was normalized by the total number of CDSs in each strain. (DOCX 69 kb)
Vanishing Hall Response of Charged Fermions in a Transverse Magnetic Field
Creators: name: Filippone, Michele
name: Bardyn, Charles-Edouard
name: Greschner, Sebastian
name: Giamarchi, Thierry
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We study the Hall response of quasi-two-dimensional lattice systems of charged fermions under a weak transverse magnetic field, in the ballistic coherent limit. We identify a setup in which this response vanishes over a wide range of parameters: the paradigmatic "Landauer-Büttiker" setup commonly studied for coherent quantum transport, consisting of a strip contacted to biased ideal reservoirs of charges. We show that the effect does not rely on particle-hole symmetry, and is robust to a variety of perturbations including variations of the transverse magnetic field, chemical potential, and temperature. We trace this robustness back to a topological property of the Fermi surface: the number of Fermi points (central charge) of the system. We argue that the mechanism responsible for the vanishing Hall response can operate both in noninteracting and interacting systems, which we verify in concrete examples using density-matrix renormalization group (DMRG) simulations.
description: 6 pages, 3 figures + Supplemental Material (8 pages; in source)
Expanding, axisymmetric pure-radiation gravitational fields with a simple twist
Creators: name: Ivanov, B. V.
Publisher: name: arXiv
Year: 2001
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: New expanding, axisymmetric pure-radiation solutions are found, exploiting the analogy with the Euler-Darboux equation for aligned colliding plane waves.
description: revtex, 5 pages
Matter waves in a gravitational field: An index of refraction for massive particles in general relativity
Creators: name: Evans, J. C.
name: Alsing, P. M.
name: Giorgetti, S.
name: Nandi, K. K.
Publisher: name: arXiv
Year: 2001
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We consider the propagation of massive-particle de Broglie waves in a static, isotropic metric in general relativity. We demonstrate the existence of an index of refraction that governs the waves and that has all the properties of a classical index of refraction. We confirm our interpretation with a WKB solution of the general-relativistic Klein-Gordon equation. Finally, we make some observations on the significance of the optical action.
description: 20 pages, latex, ps and pdf. To appear in Am.J.Phys September, 2001