cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 7: of A multilevel pan-cancer map links gene mutations to cancer hallmarks
Creators: name: Knijnenburg, Theo
name: Bismeijer, Tycho
name: Wessels, Lodewyk
name: Shmulevich, Ilya
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Physiology
subject: Science Policy
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Plant Biology
subject: Computational Biology

description: Figure S6. The coefficient of variation (CoV) across cancer types at the gene, pathway, and hallmark levels. A, violin plots of the CoV of the average mutational investment (MI) scores for the genes, pathways, and hallmarks across the ten cancer types. The black violin plots are based on the actual map, whereas the red plots are the average values across 1,000 randomly rewired maps. B, scatterplots of CoV (top panels), standard deviation (SD) (middle panels), and means (bottom panels) for pathways (left panels) and hallmarks (right panels) comparing the actual values (x-axis, as also depicted in A) with the average values across 1,000 randomly rewired maps (y-axis). Data points from the actual map that are more than 2SD away from the mean of the 1,000 randomly rewired maps are highlighted with circles and squares. In addition, the total number of data points that are more than 2SD larger or smaller than random are printed above the figure.
Additional file 6: of Polyglutamine toxicity in yeast induces metabolic alterations and mitochondrial defects
Creators: name: Papsdorf, Katharina
name: Kaiser, Christoph
name: Drazic, Adrian
name: GrĂśtzinger, Stefan
name: HaeĂNer, Carmen
name: Eisenreich, Wolfgang
name: Richter, Klaus
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Developmental Biology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology

description: Expression differences between Q 56 -YFP and Q 30 -YFP yeast cells. Cluster regulation in four possible combinations of the Q0/Q56 and Q0/Q30 experimental data sets. A) Consistency of the down-regulation of the genes in phosphate uptake and transport. Each cluster represents a comparison of different Q0 and Q30 (lower row) and Q56 experiments (upper row). B) Consistency of the up-regulation of the iron and the sulfur cluster. Each cluster represents a comparison of different Q0 and Q30 (lower row) and Q56 experiments (upper row). (PDF 4826Â kb)
Additional file 1: of Inversion symmetry of DNA k-mer counts: validity and deviations
Creators: name: Shporer, Sagi
name: Chor, Benny
name: Saharon Rosset
name: Horn, David
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: The variation of k-limits (defined by largest k for which Ek[X] ≈ 0.1) as function of chromosome length in HG38 both before and after masking has been applied. (DOCX 17 kb)
Optimizing the specific removal rate with the burst mode under varying conditions
Creators: name: Jäggi, Beat
name: Remund, Stefan Marco
name: Zhang, Yiming
name: Kramer, Thorsten
name: Neuenschwander, Beat
Year: 2017

description: The influence of pulse-bursts is investigated using different spot sizes and different wavelengths as well. The specific removal is calculated and compared as a function the peak fluence of the single pulses (not total fluence of the burst package). A drop in the specific removal for copper and alumi-num is observed for a 2 pulse-burst, whereas for a 3 pulse-burst the specific removal rate is larger than for the 2 pulse-burst and may exceed the rate observed in the single pulse mode in special cases. Possible explanations for these observations are given based on shielding effects and a pre-conditioning by previous pulses. The usage of pulse-bursts may also increase the process window and in addition influence the surface quality. The formation of small cavities on the machined sur-face often appearing in steel can be shifted to higher fluences if pulse-bursts are applied.
Additional file 1: Table S1. of Safety and efficacy of daclizumab in relapsing-remitting multiple sclerosis: 3-year results from the SELECTED open-label extension study
Creators: name: Gold, Ralf
name: Ernst-Wilhelm Radue
name: Giovannoni, Gavin
name: Selmaj, Krzysztof
name: Havrdova, Eva
name: Dusan Stefoski
name: Sprenger, Till
name: Montalban, Xavier
name: Cohan, Stanley
name: Umans, Kimberly
name: Greenberg, Steven
name: Gulden Ozen
name: Elkins, Jacob
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: List of IECs and/or IRBs for SELECTED. (DOCX 20Â kb)
Shape-D - Stärkung der Handlungskompetenzen Pflegender im Umgang mit Menschen mit Demenz
Creators: name: Blaser, Regula
name: Ackermann, Maja
Publisher: name: Hogrefe
Year: 2019

description: Dem Projekt Shape-D der Berner Fachhochschule ist es gelungen, Wissen und Fertigkeiten in ein einziges Weiterbildungsprogramm zu intgrieren, was sich nachhaltig positiv auf die Handlungskompetenzen der Pflegepersonen und damit indirekt auf die Lebensqualität der Menschen mit einer Demenzerkrankung auswirkt.
Additional file 9: of A multilevel pan-cancer map links gene mutations to cancer hallmarks
Creators: name: Knijnenburg, Theo
name: Bismeijer, Tycho
name: Wessels, Lodewyk
name: Shmulevich, Ilya
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Figure S7. Mutational investment in hallmarks explained by significantly mutated genes and non-significantly mutated genes. For each combination of a cancer type and a hallmark, blue areas indicate the percentage of samples that have a mutation in at least one gene that is linked to the hallmark and significantly frequently mutated according to Mutational Significance in Cancer (MuSiC) and/or Genomic Identification of Significant Targets In Cancer (GISTIC); grey areas indicate the percentage of samples that have a mutation in at least one gene that is linked to the hallmark, but none of these samples have a mutation in a significantly frequently mutated gene; black areas indicate the percentage of samples that have no mutated genes that link to the hallmark. BLCA, bladder urothelial carcinoma, BRCA, breast invasive carcinoma; CORE, colon/rectum adenocarcinoma; GBM, glioblastoma multiforme; HNSC, head and neck squamous cell carcinoma; KIRC, kidney renal clear cell carcinoma; LUAD, lung adenocarcinoma; LUSC, lung squamous cell carcinoma; OV, ovarian serous cystadenocarcinoma; UCEC, uterine corpus endometrioid carcinoma.
Additional file 13: Figure S5. of Transcriptome profiling of grapevine seedless segregants during berry development reveals candidate genes associated with berry weight
Creators: name: Muñoz-Espinoza, Claudia
name: Genova, Alex Di
name: Correa, José
name: Silva, Romina
name: Maass, Alejandro
name: González-Agüero, Mauricio
name: Orellana, Ariel
name: Hinrichsen, Patricio
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Correlogram representing 431 significant correlations (p
Investigation of root reinforcement decay after a forest fire in a Scots pine (Pinus sylvestris) protection forest
Creators: name: Vergani, Chiara
name: Werlen, Mario
name: Conedera, Marco
name: Cohen, Denis
name: Schwarz, Massimiliano
Publisher: name: Elsevier
Year: 2017

description: Natural disturbances may cause a temporary reduction or elimination of the protective effect of forests. The management of protection forests aims to influence forest dynamics to ensure an optimal and continuous protective effect. To achieve this goal quantitative and detailed information about the post-disturbance stand dynamics is needed. In the case of hillslopes prone to shallow landslides in particular, there is a lack of knowledge about the effect of fire on the dynamic of root reinforcement and on the related increment in landslide risk. Such quantitative information is of paramount importance when dealing with forest system engineering resilience after disturbances. The objective of this work is to quantify the temporal and spatial dynamics of root reinforcement in a burnt Scots pine (Pinus silvestris) forest 4 years after a stand replacing fire in Switzerland. To this purpose, we compare the contribution of root reinforcement to soil strength of a burnt forest patch with a nearby-located, similar mature and healthy, stand. Root distribution measurements and field pullout tests on roots were used to calculate the spatial distribution of root reinforcement in both types of stand. The results show a reduction by a factor of 3.6 in root reinforcement 4 years after the forest fire due to the degradation of the root mechanical properties. Moreover, we demonstrate that at this post-fire stage the natural regeneration is not able to counterbalance the protective function loss in term of root reinforcement.
Assessment of the concept of forest functions in Central European forestry
Creators: name: Bončina, Andrej
name: Simončič, Tina
name: Rosset, Christian
Publisher: name: Elsevier
Year: 2019
Subjects: Multifunctional forestry
Ecosystem services
Mapping
Forest planning
Spatially-based tool

description: Forest functions (FF) are a constituent part of the concept of sustainable and multifunctional forestry in Central Europe (CE). We describe the origins and development of the current concept of FF in CE forestry and assess FF as a spatially-based tool for multi-objective forest management and policy based on a framework of six dimensions (purpose, type, legal status, mapping procedure, management and implementation). Designated FF areas indicate areas of relatively higher importance for public interests. In CE forestry, five specific purposes of FF can be identified: i) a tool for an adapted management regime, ii) the allocation of public money to subsidize services, iii) land use planning, iv) identification of ‘valuable’ locations in forest areas and v) a basis for dialog between the forestry sector and the public. Three main FF types are defined: productive (economic, supply), protective (ecological, environmental) and social (well-being, recreational), which are all further classified. One or more (or no) FF can be designated and overlapped in the same forest area. The public forestry administration has the main authority in the designation of FF, but several public services, NGOs, forest owners and the public may or must be involved in the designation process. Mapping FF areas is usually an essential part of forest planning at the landscape or regional spatial scale. The management regime in the designated areas, if compared to that used in general forests, is either the same, slightly adapted, strongly modified or restricted so as to ensure the provision of the target services. Management arrangements for providing desired FF on non-state forest land can be supported by financial instruments. The main advantage of FF is that they are a spatially-explicit tool for dealing with forest areas with high societal value. Three main criticisms of FF can be identified depending on how they are implemented: lack of operationalization, inadequate monitoring of management effectiveness and normative designation and mapping of FF.
Platyrhina tangi Iwatsuki, Zhang & Nakaya 2011
Creators: name: Straube, Nicolas
name: White, William T.
name: Ho, Hsuan-Ching
name: Rochel, Elisabeth
name: Corrigan, Shannon
name: Li, Chenhong
name: Naylor, Gavin J. P.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Elasmobranchii
Rajiformes
Rhinobatidae
Platyrhina
Platyrhina tangi

description: Platyrhina tangi Iwatsuki, Zhang & Nakaya, 2011
Type locality: Meitsu, Miyazaki, Japan, 31°32'12" N, 131°24'16" E.
The six Taiwanese samples formed a single cluster that was distinct from, but sister to, Plathyrhinoides triseriata (GN1043) from off California (Supplementary Material 1). These six samples represent the centre of the known distribution of this species, which extends from Japan to Vietnam.
description: Published as part of Straube, Nicolas, White, William T., Ho, Hsuan-Ching, Rochel, Elisabeth, Corrigan, Shannon, Li, Chenhong & Naylor, Gavin J. P., 2013, A DNA sequence-based identification checklist for Taiwanese chondrichthyans, pp. 256-278 in Zootaxa 3752 (1) on page 271, DOI: 10.11646/zootaxa.3752.1.16, http://zenodo.org/record/285357
Additional file 10: of Inversion symmetry of DNA k-mer counts: validity and deviations
Creators: name: Shporer, Sagi
name: Chor, Benny
name: Saharon Rosset
name: Horn, David
Publisher: name: Figshare
Year: 2016
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Mouse data: ratios of #T/#A, #G/#C, and numbers of genes on Plus and Minus strands, together with their Z values. Most gene ratios have insignificant Z values, i.e. they are consistent with equality. Most #T/#A and #G/#C display significant violation of strict Chargaff rule. ChrX is exceptional: here both Z values are small and Chargaff violation is insignificant. Gene data are derived from MRK_list2 in ftp://ftp.informatics.jax.org/pub/reports/index.html . (DOCX 18Â kb)
Ökobilanzen von Gebäuden
Écobilans des bâtiments
Creators: name: Ganne-Chédeville, Christelle
name: Büsser, Katrin
name: Teixeira Pinho, Joana
Publisher: name: BFH
Year: 2020

description: Die Ziele der nachhaltigen Entwicklung müssen bis 2030 erreicht werden. Noch dringlicher sieht es beim Pariser Klimaabkommen aus: Die Massnahmen müssen ab sofort umgesetzt werden. Die Baubranche steht bei der Reduktion der CO2-Emissionen im Fokus. Und sie hat grosses Potenzial, diese Herausforderung zu meistern.
description: Les objectifs du développement durable doivent être atteints d’ici 2030. L’Accord de Paris sur le climat, lui, est encore plus urgent : les mesures doivent être appliquées dès à présent. Le domaine de la construction est en ligne de mire pour la réduction des émissions de CO2 et a un haut potentiel pour relever ce défi.
Additional file 4: of A multilevel pan-cancer map links gene mutations to cancer hallmarks
Creators: name: Knijnenburg, Theo
name: Bismeijer, Tycho
name: Wessels, Lodewyk
name: Shmulevich, Ilya
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Figure S3. Connectivity in the map between genes and hallmarks. The heatmap indicates the membership (black squares) of genes within hallmarks. The grey bars to the right indicate the number of genes that are linked to a hallmark. The grey bars on the top indicate the number of hallmarks that a gene is pointing to.
Additional file 4: Table S4. of Transcriptome profiling of grapevine seedless segregants during berry development reveals candidate genes associated with berry weight
Creators: name: Muñoz-Espinoza, Claudia
name: Genova, Alex Di
name: Correa, José
name: Silva, Romina
name: Maass, Alejandro
name: González-Agüero, Mauricio
name: Orellana, Ariel
name: Hinrichsen, Patricio
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology

description: Read mapping distribution summary. (PDF 49 kb)
Additional file 2: of Polyglutamine toxicity in yeast induces metabolic alterations and mitochondrial defects
Creators: name: Papsdorf, Katharina
name: Kaiser, Christoph
name: Drazic, Adrian
name: GrĂśtzinger, Stefan
name: HaeĂNer, Carmen
name: Eisenreich, Wolfgang
name: Richter, Klaus
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Genes with reduced expression in Q 56 -YFP colonies versus Q 0 -YFP colonies. The table summarizes the averaged expression differences from the comparison of four data sets (Q0_2d, Q0_3d, Q56_3d and Q56_4d). Each combination was evaluated and the average expression difference was obtained. Standard deviation was calculated from these values. p-values were obtained by using the t-test. Hits with a p-value greater than 0.05 are indicated in grey. (DOCX 23Â kb)
Additional file 4: of Polyglutamine toxicity in yeast induces metabolic alterations and mitochondrial defects
Creators: name: Papsdorf, Katharina
name: Kaiser, Christoph
name: Drazic, Adrian
name: GrĂśtzinger, Stefan
name: HaeĂNer, Carmen
name: Eisenreich, Wolfgang
name: Richter, Klaus
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Genes with reduced expression in Q 30 -YFP colonies versus Q 0 -YFP colonies. The table summarizes the expression differences of two data sets (Q0_3d, Q30_3d). Standard deviation and p-values were obtained as described above. Hits with a p-value greater than 0.05 are indicated in grey. (DOCX 16Â kb)
Additional file 5: of Polyglutamine toxicity in yeast induces metabolic alterations and mitochondrial defects
Creators: name: Papsdorf, Katharina
name: Kaiser, Christoph
name: Drazic, Adrian
name: Grötzinger, Stefan
name: Haeßner, Carmen
name: Eisenreich, Wolfgang
name: Richter, Klaus
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Reduced expression between Q 30 -YFP and Q 0 -YFP yeast cells. A) Network of genes, which are lower expressed in Q30-YFP producing cells compared to Q0-YFP producing cells. Genes are colored in accordance to their log differences (100 % green: log2 > 1, 75 % green: 1 > log2 > 0.75, 50 % green: 0.75 > log2 > 0.5, 25 % green: 0.5 > log2 > 0.25, white: 0.25 > log2 > -0.25, 25 % red: -0.25 > log2 > -0.5, 50 % red: -0.5 > log2 > -0.75, 75 % red: -0.75 > log2 > -1, 100 % green: -1 > log2). Pink frames highlight the predicted co-regulated genes. B) Statistical analysis of predicted co-regulators within Figure S2A. The line shows the number of genes within the respective category, while the vertical bar chart indicates the percentage of these genes predicted by the SPELL-correlations. (PDF 180 kb)
How do patients, politicians, physiotherapists and other health professionals view physiotherapy research in Switzerland? A qualitative study
Creators: name: Schoeb, Veronika
name: Rau, Barbara
name: Nast, Irina
name: Schmid, Stefan
name: Barbero, Marco
name: Tal, Amir
name: Kool, Jan
Publisher: name: Wiley-Blackwell - STM
Year: 2014

description: Background. Since 2002, the professional education for Swiss physiotherapists has been upgraded to a tertiary educational level. With this change, the need for research related to professional practice has become more salient. The elaboration of research priorities is seen as a possible way to determine the profession’s needs, to help coordinate research collaborations and to address expectations regarding physiotherapy. There is still limited evidence about stakeholders’ views with regard to physiotherapy research. The objective of this study was to investigate key stakeholders’ opinions about research in physiotherapy in Switzerland. Methods. Focus groups with patients, health professionals, researchers and representatives of public health organizations were conducted, and semi-structured interviews were conducted with politicians, health insurers and medical doctors from three linguistic regions in Switzerland. An interview guide was elaborated. Data were transcribed and analysed using inductive content analysis (Atlas-ti 6W). Results. Eighteen focus groups and 23 interviews/written commentaries included 134 participants with various research experiences and from different settings. Fourteen categories were defined reflecting three themes: identity, interdisciplinarity and visibility. Stakeholders had positive views about the profession and perceived physiotherapists’ important role now and in the future. Yet, they also felt that physiotherapy was not sufficiently recognized in society and not visible enough. A stronger professional identity would be key to enhancing interdisciplinary work. Conclusions. Results of this qualitative study provide insights into key aspects for moving the physiotherapy profession forward. Identity is at the heart of physiotherapy, not necessarily in terms of research priorities but in the definition of domains of competence and future positioning. Identity is also tightly connected to Interdisciplinarity as this might threaten the existence of the profession. Stakeholders outside the profession insist on the importance of visibility. The results of this study can help stakeholders reflect on the future of physiotherapy and elaborate research priorities. Keywords interdisciplinary; physiotherapy; policy; qualitative research; research priorities
Additional file 1: of Polyglutamine toxicity in yeast induces metabolic alterations and mitochondrial defects
Creators: name: Papsdorf, Katharina
name: Kaiser, Christoph
name: Drazic, Adrian
name: Grötzinger, Stefan
name: Haeßner, Carmen
name: Eisenreich, Wolfgang
name: Richter, Klaus
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Comparison between averaged Q 0 /Q 56 -YFP expression levels of microarrays. A) Relative expression differences with standard deviation. B) Relative expression differences with threshold levels for the inclusion in the initial hits list. C) Determination of noise levels for the exclusion of genes from the initial hits list. S. pombe MAS5 values from the microarray set Q0_2d. The blacsk line represents the applied noise threshold D) Correlation between Q0_3d and Q30_3d MAS5 signals. The lines represent the applied noise threshold. (PDF 144 kb)
Natürliche Fragmente inmitten des Baubooms
Creators: name: Kleinschroth, Fritz
name: Wilkes-Allemann, Jerylee
Publisher: name: Schweizerischer Forstverein
Year: 2022

description: Ein Urban-Forestry-Stadtrundgang in Zürich Nord zeigt, warum es Stadtbäume und Ruderalwälder auch in einem Zürcher Modellquartier für nachhaltiges Bauen schwer haben – und was der Biber damit zu tun hat.
Additional file 2: Table S2. of Associations among the plasma amino acid profile, obesity, and glucose metabolism in Japanese adults with normal glucose tolerance
Creators: name: Takashina, Chisa
name: Ichizo Tsujino
name: Watanabe, Taku
name: Sakaue, Shinji
name: Ikeda, Daisuke
name: Yamada, Asuka
name: Sato, Takahiro
name: Ohira, Hiroshi
name: Otsuka, Yoshinori
name: Oyama-Manabe, Noriko
name: Ito, Yoichi
name: Nishimura, Masaharu
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology

description: Correlations between plasma amino acid concentrations and age. (DOC 42Â kb)
title: A dialectic of inclusion & exclusion
Creators: name: Millar, Thomas
Year: 2024

description: Diese Masterarbeit befasst sich mit den Grenzen positiver und negativer Solidarität, Inklusion und Exklusion, innerhalb pluralistischer Gesellschaften. Anhand der jüdischen Erfahrungen im Habsburger- und Romanow-Reich sowie der christlichen Erfahrung im Osmanischen Reich werden die sich verändernden Grenzen der Gemeinschaft über einen langen historischen Zeitraum aufgezeigt. Die Herausbildung dieser gegensätzlichen Projekte der Inklusion und Exklusion wurde durch eine Synthese sozioökonomischer Auseinandersetzungen auf der Grundlage von Klasse, Religion, Rasse und Ethnie sowie bereits etablierter politisch-kultureller Diskurse, die oft tief in der religiösen Tradition verwurzelt waren, untermauert. Die Arbeit geht der Frage nach, wie die damaligen politischen Bedürfnisse die Ausgrenzung für mächtige Interessengruppen attraktiv machten und wie die marginalisierten diasporischen Minderheiten auf diese Projekte reagierten.
description: This master thesis concerns itself with the delineation of positive and negative solidarities, inclusion and exclusion, in pluralistic societies. With reference to the experience of Jews in the Habsburg and Romanov empires, and the experience of Christians in the Ottoman empire, this investigation highlights the changeable bounds of community over the longue durée. The constitution of these opposing projects of inclusion and exclusion built on a synthesis of socio-economic antagonisms across a range of class, religious, racial, and ethnic lines, and of established politico-cultural discourses, often deeply rooted in religious traditions. The thesis explores the contemporary political needs which made exclusion appealing to powerful constituencies, and how excluded diasporic minorities responded to these projects.
Widerspruch oder Synergie? Zur Kosteneffizienz und Qualität von Sozialdiensten
Creators: name: Iseli, Daniel
name: Steger, Simon Raphael
Publisher: name: Avenir Social
Year: 2015

description: Der umfassende Lastenausgleich in der Sozialhilfe führt periodisch zu heftigen politischen Diskussionen im Kanton Bern. Aus der letzten resultierte ein Bonus-Malus-System für Sozialdienste. Die Berner Fachhochschule entwickelte in diesem Zusammenhang ein Analyseinstrument, welches Aspekte von Kosteneffizienz und Qualität von Sozialdiensten untersucht und vergleicht.
Additional file 1: Table S1. of Comparison of the gut microbiota composition between obese and non-obese individuals in a Japanese population, as analyzed by terminal restriction fragment length polymorphism and next-generation sequencing
Creators: name: Kasai, Chika
name: Sugimoto, Kazushi
name: Moritani, Isao
name: Tanaka, Junichiro
name: Oya, Yumi
name: Inoue, Hidekazu
name: Tameda, Masahiko
name: Shiraki, Katsuya
name: Ito, Masaaki
name: Takei, Yoshiyuki
name: Takase, Kojiro
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Colonoscopy diagnosis of study participant. (DOCX 17 kb)
Patterns and drivers of biodiversity-stability relationships under climate extremes
Creators: name: De Boeck, Hans J.
name: Bloor, Juliette M. G.
name: Kreyling, Juergen
name: Ransijn, Johannes C. G.
name: Nijs, Ivan
name: Jentsch, Anke
name: Zeiter, Michaela
name: Wardle, David
Publisher: name: Wiley-Blackwell
Year: 2017

description: 1. Interactions between biodiversity loss and climate change present significant challenges for research, policy and management of ecosystems. Evidence suggests that high species diversity tends to increase plant community stability under interannual climate fluctuations and mild dry and wet events, but the overall pattern of diver-sity–stability relationships under climate extremes is unclear. 2. We comprehensively review results from observational and experimental studies to assess the importance of diversity effects for ecosystem function under climate extremes. Both the broad literature review and a meta-analysis focused on the ef-fects of extreme precipitation events on above-ground biomass reveal no signifi-cant interaction between species richness and climate extremes. 3. Causes for variation in diversity effects under climate extremes are explored, from stress thresholds to biotic interactions and community assembly, and we consider how these may modulate the outcomes of biodiversity–stability relationships. We also examine how specific characteristics of climate extremes and timing of meas-urements may interact with mechanisms of diversity–stability relationships. 4. Synthesis. Hypotheses tailored to the complexity of diversity effects, the implementation of standardised experiments and the use of trait-based biodiversity meas-ures rather than species richness should lead to better causal understanding of whether and how biodiversity may protect ecosystems from adverse effects of climate extremes.
Additional file 8: Figure S4. of TSS-EMOTE, a refined protocol for a more complete and less biased global mapping of transcription start sites in bacterial pathogens
Creators: name: Prados, Julien
name: Linder, Patrick
name: Redder, Peter
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 60506 Virology
subject: Computational Biology

description: Screenshots demonstrating how the TSS-EMOTE reads map in the sarA region. A) The mapping sequences (the 20 nt after the Control Sequence) from the TSS-EMOTE data for S. aureus grown in RPMI medium were mapped onto the sarA locus (which has three previously identified TSSs, see also Additional file 1: Table S1). Note that in this screen-shot, regions with high coverage have many reads that are outside the “window” (examples marked with blue circles). However, the true coverage can be seen as dark grey columns (examples indicated by red arrows). B) Same data as with panel A, but using the UMI-corrected read-counts (meaning that if several reads that map to the same position have identical UMIs, then only a single read is used). Only the first nucleotides of the mapping-sequences are shown, and these represent the 5’ nucleotides of the original RNA molecules. TSSs previously identified by others (see also Additional file 1: Table S1) and the TSSs identified in this study (see also Additional file 3: Table S2) are also shown (bottom part of the figure). (PDF 624 kb)
Additional file 2: Table S1. of Mediator subunit Med12 contributes to the maintenance of neural stem cell identity
Creators: name: Kim, Nam
name: Livi, Carolina
name: P. Yew
name: Boyer, Thomas
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Differentially regulated genes by Med12 KD in mNS-5 NSCs. (DOCX 100 kb)
Was kann der Wasserbau hinsichtlich steigender Wassertemperaturen tun?
Creators: name: Drewes, Jon
name: Jenzer Althaus, Jolanda
Publisher: name: Verein für Ingenieurbiologie
Year: 2022
Subjects: Biodiversität Fliessgewässer Wassertemperaturen Bünz und Wigger

description: Die Wassertemperatur beeinflusst zahlreiche chemische sowie physikalische Vorgänge in Fliessgewässern und ist ein ökologischer Schlüsselfaktor für die kälteliebenden Fischarten Äsche und Bachforelle. Bedingt durch den Klimawandel werden in Zukunft extremere Hitze- sowie Dürreperioden auftreten, was für die genannten Leitarten kritisch ist. In den Gewässern Bünz und Wigger wurden in den Jahren 2019 bis 2021 die Wassertemperaturen an mehreren Gewässerstandorten erfasst und kombiniert mit Wetter- und Abflussdaten ausgewertet. Es konnte hier selbst in aus-geprägten Hitze- und Niedrigwasserperioden keine Temperaturschichtung in Kolken festgestellt werden. Auch eine intensiv besonnte Blockrampe von ca. 60 m Länge zeigte keine messbare Erwärmung des Abflusses. Bestätigt wurde, dass die Wassertemperaturen im Längsverlauf deutlich heterogen verteilt waren und fehlende Beschattung die Erwärmung förderten. Für die wasserbauliche Praxis werden hauptsächlich die Massnahmen Beschattung, Vernetzung und Konzentration der Niedrigwasserrinne empfohlen, um die Wassertemperatur zu senken bzw. die Wassererwärmung abzumindern.
Additional file 2: Table S2. of Comparison of the gut microbiota composition between obese and non-obese individuals in a Japanese population, as analyzed by terminal restriction fragment length polymorphism and next-generation sequencing
Creators: name: Kasai, Chika
name: Sugimoto, Kazushi
name: Moritani, Isao
name: Tanaka, Junichiro
name: Oya, Yumi
name: Inoue, Hidekazu
name: Tameda, Masahiko
name: Shiraki, Katsuya
name: Ito, Masaaki
name: Takei, Yoshiyuki
name: Takase, Kojiro
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Computational Biology

description: Correlation between microbiota and patient age. (DOCX 20 kb)
Hinsehen und Hinriechen, Hinhören und Hinfühlen : Sabine Hahn im Gespräch mit Anna Gogl.
Creators: name: Hahn, Sabine
Publisher: name: Hogrefe
Year: 2017

description: Anna Gogl ist diplomierte psychiatrische Pﬂ egefachfrau, Pﬂegelehrerin und Pﬂegeexpertin. Seit 1959 ist sie in der psychiatrischen Pﬂege tätig gewesen. Sie hat nicht nur Psychiatrie-Geschichte miterlebt sondern auch auf verschiedenen Ebenen Einﬂ uss genommen. Mit dem Buch „Selbstvernachlässigung bei alten Menschen – Von den Phänomenen zum Pﬂ egehandeln“ hat sie vor drei Jahren deut liche Spuren hinterlassen. Ein Buch, auf reﬂ ektierte Erfahrungen setzt
Wenn der Mensch mit dem Roboter…
Creators: name: Bachmann, Eduard
Publisher: name: Berner Fachhochschule BFH Architektur, Holz und Bau/Technik und Informatik
Year: 2018

description: Die Zusammenarbeit zwischen Mensch und Roboter wird in der Industrie 4.0 mit den neuen Möglichkeiten der Digitalisierung immer wichtiger. An der BFH untersuchen Studenten und Dozenten in Forschungsprojekten gemeinsam mit Wirtschaftspartnern, in welchen Bereichen der Holzwirtschaft sich die kollaborative Robotik sinnvoll einsetzen lässt.
The effect of gender Inequities in the classroom and beyond in U.S. business schools
Creators: name: Balkin, David B.
name: Trevino, Len J.
name: Straub, Caroline
Publisher: name: SAGE
Year: 2021
Subjects: gender
equity
diversity
inclusion
social role theory
relational theory
perceived organizational inclusion frameworks

description: When women teach management in U.S. business schools they are likely to experience more gender inequities than men. In this essay we examine three dimensions of management teaching where gender inequities are likely to occur: (1) student-faculty interactions; (2) student evaluations of teaching; and (3) interactions between faculty peers. The types of inequities experienced by women when they teach include feeling social pressure to submit to ad hoc student demands for personal favors and emotional support that infringe on a professor’s time; having their teaching performance judged from student evaluations of teaching that are subject to gender bias; and experiencing lower levels of organizational inclusion compared to their male colleagues. We utilize theoretical logic from social role theory, relational practice, and perceived organizational inclusion frameworks supported by the research literature to provide greater insight as to why women are likely to experience more adversity when they teach management in business schools. After we explain the basis for gender inequities we prescribe action steps that should improve equity for all faculty who teach management.
Rhinobatidae
Creators: name: Straube, Nicolas
name: White, William T.
name: Ho, Hsuan-Ching
name: Rochel, Elisabeth
name: Corrigan, Shannon
name: Li, Chenhong
name: Naylor, Gavin J. P.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Elasmobranchii
Rajiformes
Rhinobatidae

description: Family Rhinobatidae
description: Published as part of Straube, Nicolas, White, William T., Ho, Hsuan-Ching, Rochel, Elisabeth, Corrigan, Shannon, Li, Chenhong & Naylor, Gavin J. P., 2013, A DNA sequence-based identification checklist for Taiwanese chondrichthyans, pp. 256-278 in Zootaxa 3752 (1) on page 272, DOI: 10.11646/zootaxa.3752.1.16, http://zenodo.org/record/285357
Additional file 1: of Cost-effectiveness of a cardiac output-guided haemodynamic therapy algorithm in high-risk patients undergoing major gastrointestinal surgery
Creators: name: Sadique, Zia
name: Harrison, David
name: Grieve, Richard
name: Rowan, Kathryn
name: Pearse, Rupert
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Marine Biology
subject: Science Policy

description: Supplementary data describing costs and the findings of sub-group analyses and sensitivity analyses. The additional file 1 includes supplementary information on unit costs of resources, 6 months results (hospital costs, sub-group results, cost-effectiveness acceptability curves), Kaplan-Meier survival curves and parametric extrapolation of survival beyond trial period, results of sensitivity analysis and populationexpected value of perfect information.
Dialogue à plusieurs. Jacques Wildbergers Erkundungen im Sechsteltonraum
Creators: name: Brotbeck, Roman
Publisher: name: Pfau
Year: 2021

description: Der Aufsatz zeigt die Genese von Wildbergers einziger Sechsteltonkomposition. Diese entstand in der Auseinandersetzung mit dem ebenfalls sechsteltönigen «Dialogues à Trois» von Ivan Wyschnegradsky. Der nach Uniformität strebenden Musik Wyschnegradskys stellt Wildberger die strukturelle Vielfalt entgegen, die sein Spätwerk dominiert.
Nutritional support during the hospital stay reduces mortality in patients with different types of cancers: secondary analysis of a prospective randomized trial
Creators: name: Bargetzi, L.
name: Brack, C.
name: Herrmann, J.
name: Bargetzi, A.
name: Hersberger, L.
name: Bargetzi, M.
name: Kaegi-Braun, N.
name: Tribolet, Pascal
name: Gomes, F.
name: Hoess, C.
name: Pavlicek, V.
name: Bilz, S.
name: Sigrist, S.
name: Brändle, M.
name: Henzen, C.
name: Thomann, R.
name: Rutishauser, J.
name: Aujesky, D.
name: Rodondi, N.
name: Donzé, J.
name: Laviano, A.
name: Stanga, Z.
name: Mueller, B.
name: Schuetz, P.
Publisher: name: Elsevier
Year: 2021

description: Patients and methods In this preplanned secondary analysis of patients with cancer included in a prospective, randomized-controlled, Swiss, multicenter trial (EFFORT), we compared protocol-guided individualized nutritional support (intervention group) to standard hospital food (control group) regarding mortality at 30-day (primary endpoint) and other clinical outcomes. Results We analyzed 506 patients with a main admission diagnosis of cancer, including lung cancer (n = 113), gastrointestinal tumors (n = 84), hematological malignancies (n = 108) and other types of cancer (n = 201). Nutritional risk based on Nutritional Risk Screening (NRS 2002) was an independent predictor for mortality over 180 days with an (age-, sex-, center-, type of cancer-, tumor activity- and treatment-) adjusted hazard ratio of 1.29 (95% CI 1.09-1.54; P = 0.004) per point increase in NRS. In the 30-day follow-up period, 50 patients (19.9%) died in the control group compared to 36 (14.1%) in the intervention group resulting in an adjusted odds ratio of 0.57 (95% CI 0.35-0.94; P = 0.027). Interaction tests did not show significant differences in mortality across the cancer type subgroups. Nutritional support also significantly improved functional outcomes and quality of life measures. Conclusions Compared to usual hospital nutrition without nutrition support, individualized nutritional support reduced the risk of mortality and improved functional and quality of life outcomes in cancer patients with increased nutritional risk. These data further support the inclusion of nutritional care in cancer management guidelines.
Additional file 4: Table S2. of Mediator subunit Med12 contributes to the maintenance of neural stem cell identity
Creators: name: Kim, Nam
name: Livi, Carolina
name: P. Yew
name: Boyer, Thomas
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: 60506 Virology

description: RT-qPCR primer sequences. (DOCX 106 kb)
Additional file 1: of UK Preschool-aged childrenâ  s physical activity levels in childcare and at home: a cross-sectional exploration
Creators: name: Hesketh, Kathryn
name: Griffin, Simon
name: Sluijs, Esther
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology

description: Specially designed question to assess childcare attendance. (DOCX 16 kb)
Poverty and social security in time of crisis: lessons (to be) learned during the Covid-19 pandemic: Presentation
Creators: name: Hümbelin, Oliver
Year: 2023

description: Using linked tax data for 4.5 million people, the research group will investigate changes in income and assets between 2019 and 2022, focusing on the situation of people with few financial resources. By linking these data with data on social security benefits, it will also be possible to show how effectively the social security system protects the people affected. A further part of the project will use case data from Caritas Switzerland, the country’s biggest NGO, which supported more than 100,000 people during the pandemic. This social security safety net comes into play particularly when there are gaps in state cover. This basis will be used to develop a poverty monitoring early warning system for future crises.
Additional file 1: of LRRK2 phosphorylates pre-synaptic N-ethylmaleimide sensitive fusion (NSF) protein enhancing its ATPase activity and SNARE complex disassembling rate
Creators: name: Belluzzi, Elisa
name: Gonnelli, Adriano
name: Maria-Daniela Cirnaru
name: Marte, Antonella
name: Plotegher, Nicoletta
name: Russo, Isabella
name: Civiero, Laura
name: Cogo, Susanna
name: Carrion, Maria
name: Franchin, Cinzia
name: Arrigoni, Giorgio
name: Beltramini, Mariano
name: Bubacco, Luigi
name: Onofri, Franco
name: Piccoli, Giovanni
name: Greggio, Elisa
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Molecular Biology
subject: Pharmacology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Figure S1. Expression and phosphorylation of LRRK2 in primary cortical neurons subjected to SypHy assays. Figure S2. Biochemical validation of recombinant human NSF. Figure S3. LRRK2 phosphorylation of NSF occurs within the first 30 minutes. Figure S4. LC-MS/MS analysis of NSF phosphorylated by LRRK2. Figure S5. PKC does not phosphorylate NSF at T645. Figure S6. Evaluation of optimal detergent concentration for LRRK2 and NSF activities. Figure S7. NSF wild-type and T645A have similar overall folding and T645A forms hexamers. Figure S8. Expression and purification of SDS-resistant SNARE complex. (DOCX 2062 kb)
Additional file 4: Figure S3. of EGFR is not a major driver for osteosarcoma cell growth in vitro but contributes to starvation and chemotherapy resistance
Creators: name: Sevelda, Florian
name: Mayr, Lisa
name: Kubista, Bernd
name: Lötsch, Daniela
name: Sushilla Schoonhoven
name: Windhager, Reinhard
name: Pirker, Christine
name: Micksche, Michael
name: Berger, Walter
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Plant Biology

description: Impact of serum starvation on apoptosis induction by gefitinib in osteosarcoma cells. The indicated osteosarcoma cell lines were treated with gefitinib (1 μM and 10 μM) for 24 h in 1 and 10 % FCS containing culture medium. Hoechst 33258 and propidium iodide were added for 4 h and photomicrographs of 4 optical fields per well were evaluated for cells with condensed chromatin indicating apoptosis execution. * p