cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Van Hove features in BSCCO(2212) and effective parameters for Ni impurities inferred from STM spectra
Creators: name: Tang, Jian-Ming
name: Flatté, Michael E.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We present a detailed quantitative comparison between theoretical calculations of the local density of states and recent experimental measurements of scanning tunneling spectra around Ni impurities in BSCCO(2212). A double-peak structure on the hole side of the spectrum at the Ni site is identified as the spin-split van Hove singularity in the band structure. The Ni atom induces local changes in hopping matrix elements comparable in size to the induced on-site spin-dependent potential. We find evidence from the measurements of order parameter suppression in the vicinity of the Ni impurity. These extracted impurity parameters can be of use in quantitative calculations of macroscopic response properties, such as the AC conductivity.
description: 5 pages, 4 figures
Additional file 6 of Deciphering the temporal heterogeneity of cancer-associated fibroblast subpopulations in breast cancer
Creators: name: Venning, Freja Albjerg
name: Zornhagen, Kamilla Westarp
name: Wullkopf, Lena
name: Sjölund, Jonas
name: Rodriguez-Cupello, Carmen
name: Kjellman, Pontus
name: Morsing, Mikkel
name: Hajkarim, Morteza Chalabi
name: Won, Kyoung Jae
name: Erler, Janine Terra
name: Madsen, Chris Denis
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 6: Supplementary Figure 6. To assess if a problematic batch effect was present in the dataset combined of the three repeats, we made a data normalization within each repeat by using the mean value of each CAF marker in the 4T1 D7 group, and then combined the resultant ratios in a new normalised dataset. We then performed a 2-way ANOVA with Tukey’s multiple comparisons post-test like the one done on the raw combined dataset in Fig. 2. If there were prominent batch effects within the combined dataset, then statistical comparisons on the ratios would yield different results than the same analyses performed on the raw percentages. Two out of 36 comparisons (5.6%) went from being significant in the raw dataset to not-significant in the normalised dataset, and five comparisons (13.9%) turned out statistically significant in the normalized dataset compared to the raw dataset. In the remaining 86% of the comparisons, nothing or only the level of statistical significance changed. In summary, only a minor batch effect was detected within the combined dataset.
Cylindrostethus palmaris Drake & Harris 1934
Creators: name: Moreira, Felipe Ferraz Figueiredo
name: Barbosa, Julianna Freires
name: Ribeiro, José Ricardo Inacio
name: Alecrim, Viviani Pereira
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Gerridae
Cylindrostethus
Cylindrostethus palmaris

description: Cylindrostethus palmaris Drake & Harris, 1934
Geographical distribution: Colombia, Venezuela, Trinidad & Tobago, Guyana, Suriname, French Guiana, Brazil, Ecuador, Bolivia, and Argentina.
 Distribution in Brazil: North, Central-West, and Southeast regions (PA, AM, MT, RO, MG) (Drake & Harris 1930, 1934; Kuitert 1942; Nieser 1970c; Sampaio & Py-Daniel 1993; Nieser & Melo 1997; Heckman 1998; Melo & Nieser 2004; Souza et al. 2006; Pereira & Melo 2007).
description: Published as part of Moreira, Felipe Ferraz Figueiredo, Barbosa, Julianna Freires, Ribeiro, José Ricardo Inacio & Alecrim, Viviani Pereira, 2011, Checklist and distribution of semiaquatic and aquatic Heteroptera (Gerromorpha and Nepomorpha) occurring in Brazil 2958, pp. 1-74 in Zootaxa 2958 (1) on page 6, DOI: 10.11646/zootaxa.2958.1.1, http://zenodo.org/record/5281851
The Thermodynamical Arrow of Time: Reinterpreting the Boltzmann-Schuetz Argument
Creators: name: Cirkovic, Milan M.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: History and Philosophy of Physics (physics.hist-ph)
subject: FOS: Physical sciences

description: The recent surge of interest in the origin of the temporal asymmetry of thermodynamical systems (including the accessible part of the universe itself) put forward two possible explanatory approaches to this age-old problem. Hereby we show that there is a third possible alternative, based on the generalization of the classical ("Boltzmann-Schuetz") anthropic fluctuation picture of the origin of the perceived entropy gradient. This alternative (which we dub the Acausal-Anthropic approach) is based on accepting Boltzmann's statistical measure at its face value, and accomodating it within the quantum cosmological concept of the multiverse. We argue that conventional objections raised against the Boltzmann-Schuetz view are less forceful and serious than it is usually assumed. A fortiori, they are incapable of rendering the generalized theory untenable. On the contrary, this analysis highlights some of the other advantages of the multiverse approach to the thermodynamical arrow of time.
description: 26 pages, "Foundations of Physics" accepted
Additional file 7 of Deciphering the temporal heterogeneity of cancer-associated fibroblast subpopulations in breast cancer
Creators: name: Venning, Freja Albjerg
name: Zornhagen, Kamilla Westarp
name: Wullkopf, Lena
name: Sjölund, Jonas
name: Rodriguez-Cupello, Carmen
name: Kjellman, Pontus
name: Morsing, Mikkel
name: Hajkarim, Morteza Chalabi
name: Won, Kyoung Jae
name: Erler, Janine Terra
name: Madsen, Chris Denis
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 7: Supplementary Figure 7. (A) A CAF-only clustering analysis visualized by UMAP, after the removal of all other cell types in the mouse melanoma TME, revealed three CAF subsets. Colours indicate the three CAF subpopulations, which were annotated as previously reported [34]. (B and C) Dot plots of selected genes expressed in mouse melanoma CAF subtypes (B) and at different time points (C). Intensity of colour indicates the average expression of each gene in each cluster, and the size of the dot is the fraction of cells in the cluster expressing that gene.
The classification of vertex operator algebras of OZ-type generated by Ising vectors of $σ$-type
Creators: name: Jiang, Cuipo
name: Lam, Ching Hung
name: Yamauchi, Hiroshi
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Algebra (math.QA)
subject: FOS: Mathematics

description: We classify vertex operator algebras (VOAs) of OZ-type generated by Ising vectors of $σ$-type. As a consequence of the classification, we also prove that such VOAs are simple, rational, $C_2$-cofinite and unitary, that is, they have compact real forms generated by Ising vectors of $σ$-type over the real numbers.
description: v3, the final version
MOESM4 of Systematic review and meta-analysis of tick-borne disease risk factors in residential yards, neighborhoods, and beyond
Creators: name: Fischhoff, Ilya
name: Bowden, Sarah
name: Keesing, Felicia
name: Ostfeld, Richard
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy

description: Additional file 4: Table S2. Spatial scale of a sample of incidence studies. For 50% of abstracts (619 randomly selected among the total 1237), we carried out full-text eligibility assessment for the 20 abstracts relating spatial risk factors to disease incidence. We determined the spatial scale of analysis for each study. (PDF 39 kb)
Additional file 1 of 3,3′,5-Triiodothyroacetic acid (TRIAC) induces embryonic ζ-globin expression via thyroid hormone receptor α
Creators: name: Chen, Huiqiao
name: Wang, Zixuan
name: Yu, Shanhe
name: Han, Xiao
name: Deng, Yun
name: Wang, Fuhui
name: Chen, Yi
name: Liu, Xiaohui
name: Zhou, Jun
name: Zhu, Jun
name: Yuan, Hao
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1. Supplementary Materials and Methods.
Financing Matters
Creators: name: Malcolm, Bill
name: Malcolm, Bill
Publisher: name: Unknown
Year: 2011
Subjects: subject: Farm Management
subject: farm finance
subject: farm management
subject: capital investment in agriculture

description: Farm systems in Australia are open systems. The financial openness of farm systems has implications for managing farms and, thus, implications for analysing farm management decisions and farm performance. In elaborating on this theme, capital investment in agriculture is considered and key ideas about agricultural financing and implications for farm management are identified. Focussing on the economics of farm management analysis, without corresponding equivalent attention to finance, is to do half the job.
Limnogonus (Limnogonus) aduncus subsp. aduncus Drake & Harris 1933
Creators: name: Moreira, Felipe Ferraz Figueiredo
name: Barbosa, Julianna Freires
name: Ribeiro, José Ricardo Inacio
name: Alecrim, Viviani Pereira
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Gerridae
Limnogonus
Limnogonus aduncus
Limnogonus (limnogonus) aduncus aduncus drake & harris, 1933

description: Limnogonus (Limnogonus) aduncus aduncus Drake & Harris, 1933
Geographical distribution: Colombia, Venezuela, Trinidad & Tobago, Panama, Guyana, Suriname, Brazil, Ecuador, Peru, Bolivia, Paraguay, and Argentina.
 Distribution in Brazil: North, Central-West, and Southeast regions (PA, AM, MT, MG, ES, SP, RJ) (Drake & Harris 1933b; Drake & Harris 1935a; Kuitert 1942; Nieser 1970c; Mascarenhas 1979; Jurberg & Gomes 1983; Mazzucconi & Bachmann 1993; Nieser & Melo 1997; Heckman 1998; Melo & Nieser 2004; Souza et al. 2006; Pereira & Melo 2007; Castanhole et al. 2008).
description: Published as part of Moreira, Felipe Ferraz Figueiredo, Barbosa, Julianna Freires, Ribeiro, José Ricardo Inacio & Alecrim, Viviani Pereira, 2011, Checklist and distribution of semiaquatic and aquatic Heteroptera (Gerromorpha and Nepomorpha) occurring in Brazil 2958, pp. 1-74 in Zootaxa 2958 (1) on page 7, DOI: 10.11646/zootaxa.2958.1.1, http://zenodo.org/record/5281851
Self-similarity of low-frequency earthquakes
Creators: name: Supino, Mariano
name: Poiata, Natalia
name: Festa, Gaetano
name: Vilotte, Jean-Pierre
name: Satriano, Claudio
name: Obara, Kazushige
Publisher: name: arXiv
Year: 2019
Subjects: subject: Geophysics (physics.geo-ph)
subject: FOS: Physical sciences

description: Low-frequency earthquakes are a particular class of slow earthquakes that provide a unique source of information on the mechanical properties of a subduction zone during the preparation of large earthquakes. Despite increasing detection of these events in recent years, their source mechanisms are still poorly characterised, and the relation between their magnitude and size remains controversial. Here, we present the source characterisation of more than 10,000 low-frequency earthquakes that occurred during tremor sequences in 2012-2016 along the Nankai subduction zone in western Shikoku, Japan. We show that the seismic moment versus corner frequency scaling for these events is compatible with an inverse of the cube law, as widely observed for regular earthquakes. Our result is thus consistent with shear rupture as the source mechanism for low-frequency earthquakes, and suggests that they obey to a similar physics of regular earthquakes, with self-similar rupture process and constant stress drop. Furthermore, when investigating the dependence of the stress drop value on the rupture speed, we found that low-frequency earthquakes might propagate at lower rupture velocity than regular earthquakes, releasing smaller stress drop.
description: 19 pages, 3 figures
MOESM1 of The development of a provincial multidisciplinary framework of consensus-based standards for Point of Care Ultrasound at the University of Saskatchewan
Creators: name: Olszynski, Paul
name: Kim, Daniel
name: Ma, Irene
name: Clunie, Michelle
name: Lambos, Peggy
name: Guzowski, Tom
name: Butz, Matthew
name: Thoma, Brent
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: Additional file 1. USASK POCUS Framework survey.
An Algebraic Roadmap of Particle Theories, Part I: General construction
Creators: name: Furey, N.
Publisher: name: arXiv
Year: 2023
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Expanding the results of [1], [2], [3], we demonstrate a network of algebraic connections between six well-known particle theories. These are the Spin(10) model, the Georgi-Glashow model, the Pati-Salam model, the Left-Right Symmetric model, the Standard Model both pre- and post-Higgs mechanism.
 A new inclusion of a quaternionic reflection within the network further differentiates $W^{\pm}$ bosons from the $Z^0$ boson in comparison to the Standard Model. It may introduce subtle new considerations for the phenomenology of electroweak symmetry breaking.
description: 15 pages, 6 figures, First paper in a series; proposed connection to Hodge duality and Jordan algebras via volume elements, updated references
Towards the realistic fermion masses with a single family in extra dimensions
Creators: name: Libanov, M. V.
name: Nougaev, E. Ya.
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: In a class of multidimensional models, topology of a thick brane provides three chiral fermionic families with hierarchical masses and mixings in the effective four-dimensional theory, while the full model contains a single vector-like generation. We carry out numerical simulations and reproduce all known Standard Model fermion masses and mixings in one of these models.
description: 12 pages, 2 figures, uses JHEP3.cls. Some minor corrections are made
Rotating AdS Einstein universes from constrained metrics
Creators: name: Harms, Benjamin
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: The imposition of a constraint between the metric tensor elements in both three- and four-dimensional, rotating AdS space-times is shown to reduce the number of independent equations of motion and to result in new families of solutions to the equations of motion. For the geometries investigated analytic solutions or partial analytic solutions of the equations of motion are obtained. In all cases the number of independent field equations is less than the number of independent functions, resulting in an undetermined function which can be freely specified. For rotating, asymptotically $AdS$ space-times the reduction of the number of field equations to be solved holds for vacuum black hole solutions and for black hole solutions obtained from space-times containing matter.
description: 11 pages, 1 figure
MOESM3 of Systematic review and meta-analysis of tick-borne disease risk factors in residential yards, neighborhoods, and beyond
Creators: name: Fischhoff, Ilya
name: Bowden, Sarah
name: Keesing, Felicia
name: Ostfeld, Richard
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Computational Biology

description: Additional file 3. Search strategy for identifying articles on spatial risk factors for people acquiring pathogenic Ixodes scapularis.
Lost Horizon? -- Modeling Black Holes in String Theory
Creators: name: Huggett, Nick
name: Matsubara, Keizo
Publisher: name: arXiv
Year: 2022
Subjects: subject: History and Philosophy of Physics (physics.hist-ph)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: The modeling of black holes is an important desideratum for any quantum theory of gravity. Not only is a classical black hole metric sought, but also agreement with the laws of black hole thermodynamics. In this paper, we describe how these goals are obtained in string theory. We review black hole thermodynamics, and then explicate the general stringy derivation of classical spacetimes, the construction of a simple black hole solution, and the derivation of its entropy. With that in hand, we address some important philosophical and conceptual questions: the confirmatory value of the derivation, the bearing of the model on recent discussions of the so-called 'information paradox', and the implications of the model for the nature of space.
description: 26 pages, 3 figures
Well-posedness for a class of degenerate Itô-SDEs with fully discontinuous coefficients
Creators: name: Lee, Haesung
name: Trutnau, Gerald
Publisher: name: arXiv
Year: 2019
Subjects: subject: Probability (math.PR)
subject: Analysis of PDEs (math.AP)
subject: Functional Analysis (math.FA)
subject: FOS: Mathematics

description: We show uniqueness in law for a general class of stochastic differential equations in $\mathbb{R}^d$, $d\ge 2$, with possibly degenerate and/or fully discontinuous locally bounded coefficients among all weak solutions that spend zero time at the points of degeneracy of the dispersion matrix. The points of degeneracy have $d$-dimensional Lebesgue-Borel measure zero. Weak existence is obtained for more general, not necessarily locally bounded drift coefficient.
description: Long version with all details (correction of typos)
A financial analysis of the effect of the mix of crop and sheep enterprises on the risk profile of dryland farms in south-eastern Australia
Creators: name: Hutchings, Timothy R.
name: Nordblom, Thomas L.
name: Hutchings, Timothy R.
name: Nordblom, Thomas L.
Publisher: name: Unknown
Year: 2011
Subjects: subject: Farm Management
subject: Farm management
subject: financial risk
subject: climate risk
subject: price risk
subject: variability

description: This study analyses the financial risk faced by representative mixed-enterprise farm businesses in four regions of south-eastern Australia. It uses discrete stochastic programming to optimise the ten-year cash flow margins produced by these farms, operating three alternative farming systems. Monte Carlo simulation analysis is used to produce a risk profile for each scenario, derived from multiple runs of this optimised model, randomised for commodity prices and decadal growing season rainfall since 1920. This analysis shows that the performance of the enterprise mixes at each site is characterised more by the level of variability of outcomes than by the mean values of financial outputs. It demonstrates that relying on mean values for climate and prices disguises the considerable risks involved with cropping in this area. Diversification into a Merino sheep enterprise on 60% of the area marginally reduced the probability of financial loss at all sites. This study emphasises the fact that the variability, or risk, associated with all scenarios far exceeds the likely change in cash margins due to innovation and good management. This analysis shows that innovations need to be assessed more on their ability to reduce costs rather than to increase income, especially when the farms are achieving near the maximum practical water-limited productivity. Further analysis shows that the current static measures of financial performance (gross margins, profit and cash margins) do not characterise the risk-adjusted performance of the various farming systems and almost certainly result in a flawed specification of best-practice farm management in south-eastern Australia.
Limnogonus (Limnogonus) hyalinus
Creators: name: Moreira, Felipe Ferraz Figueiredo
name: Barbosa, Julianna Freires
name: Ribeiro, José Ricardo Inacio
name: Alecrim, Viviani Pereira
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Gerridae
Limnogonus
Limnogonus hyalinus

description: Limnogonus (Limnogonus) hyalinus (Fabricius, 1803)
Geographical distribution: Colombia, Trinidad & Tobago, Panama, Guyana, Suriname, French Guiana, Brazil, Ecuador, and Bolivia.
Distribution in Brazil: North Region (PA, AM) (Nieser 1970c; Pereira & Melo 2007).
description: Published as part of Moreira, Felipe Ferraz Figueiredo, Barbosa, Julianna Freires, Ribeiro, José Ricardo Inacio & Alecrim, Viviani Pereira, 2011, Checklist and distribution of semiaquatic and aquatic Heteroptera (Gerromorpha and Nepomorpha) occurring in Brazil 2958, pp. 1-74 in Zootaxa 2958 (1) on page 7, DOI: 10.11646/zootaxa.2958.1.1, http://zenodo.org/record/5281851
Additional file 2 of 3,3′,5-Triiodothyroacetic acid (TRIAC) induces embryonic ζ-globin expression via thyroid hormone receptor α
Creators: name: Chen, Huiqiao
name: Wang, Zixuan
name: Yu, Shanhe
name: Han, Xiao
name: Deng, Yun
name: Wang, Fuhui
name: Chen, Yi
name: Liu, Xiaohui
name: Zhou, Jun
name: Zhu, Jun
name: Yuan, Hao
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2: Figure S1. Morpholino efficacy assay. A, B Efficacy of thraa MO was tested by co-injection of the morpholinos together with GFP RNA containing the 5′UTR of the thraa gene into the embryo. GFP fluorescence was completely inhibited with full penetrance indicating that thraa morpholinos bind to their target sequence with high efficiency.
Additional file 8 of Deciphering the temporal heterogeneity of cancer-associated fibroblast subpopulations in breast cancer
Creators: name: Venning, Freja Albjerg
name: Zornhagen, Kamilla Westarp
name: Wullkopf, Lena
name: Sjölund, Jonas
name: Rodriguez-Cupello, Carmen
name: Kjellman, Pontus
name: Morsing, Mikkel
name: Hajkarim, Morteza Chalabi
name: Won, Kyoung Jae
name: Erler, Janine Terra
name: Madsen, Chris Denis
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 8: Supplementary Table 1. Details of 2-way ANOVA and Tukey’s multiple comparisons post-test on the Lin- population out of live cells reported in main Fig. 2, all repeats combined. Supplementary Table 2. Details of 2-way ANOVA and Tukey’s multiple comparisons post-test on the CAF+ population out of Lin- cells reported in main Fig. 2, all repeats combined. Supplementary Table 3. Details of 2-way ANOVA and Tukey’s multiple comparisons post-test on the CAF+ population out of live cells reported in main Fig. 2, all repeats combined. Supplementary Table 4. Multiple t-tests pertaining to main Fig. 2, all repeats combined. Percentage cells of parent population. Supplementary Table 5. Multiple t-test pertaining to main Fig. 2, all repeats combined. Percentage cells positive for each CAF marker within the CAF+ population. Supplementary Table 6 Tukey’s multiple comparisons from 2-way ANOVA on % of single CAF markers within the CAF+ populations. Data from three independent repeats combined. Significant results reported in main Fig. 2. Supplementary Table 7 Co-expression tables of two CAF markers in 4T1 and 4T07 tumours at different time points, expanding the analysis to contain the time dimension. First CAF marker = parent gate, Subset CAF marker = child gate. CI95 = 95% confidence interval. Supplementary Table 8. Abundance ranking of Boolean CAF subpopulations in 4T1 tumours. Three independent repeats combined, mean % of CAF+ population. Top 5 subpopulations also presented in main Fig. 4. Supplementary Table 9. Abundance ranking of Boolean CAF subpopulations in 4T07 tumours. Three independent repeats combined, mean % of CAF+ population. Top 5 subpopulations also presented in main Fig. 4. Supplementary Table 10. Comparing Boolean CAF subpopulations between tumour types. Percentages from three independent repeats combined. Multiple t-test without assuming equal variance and with FDR correction for multiple comparisons (Q = 1%). Significant results reported in main Table 4.
Adhesion of membranes with competing specific and generic interactions
Creators: name: Weikl, Thomas R.
name: Andelman, David
name: Komura, Shigeyuki
name: Lipowsky, Reinhard
Publisher: name: arXiv
Year: 2002
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Biomimetic membranes in contact with a planar substrate or a second membrane are studied theoretically. The membranes contain specific adhesion molecules (stickers) which are attracted by the second surface. In the absence of stickers, the trans--interaction between the membrane and the second surface is assumed to be repulsive at short separations. It is shown that the interplay of specific attractive and generic repulsive interactions can lead to the formation of a potential barrier. This barrier induces a line tension between bound and unbound membrane segments which results in lateral phase separation during adhesion. The mechanism for adhesion--induced phase separation is rather general, as is demonstrated by considering two distinct cases involving: (i) stickers with a linear attractive potential, and (ii) stickers with a short--ranged square--well potential. In both cases, membrane fluctuations reduce the potential barrier and, therefore, decrease the tendency of phase separation.
description: 22 pages, 6 eps figures, to be published in EPJE (2002)
Quadrilateral Mesh Generation II : Meromorphic Quartic Differentials and Abel-Jacobi Condition
Creators: name: Lei, Na
name: Zheng, Xiaopeng
name: Luo, Zhongxuan
name: Luo, Feng
name: Gu, Xianfeng
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computational Geometry (cs.CG)
subject: FOS: Computer and information sciences

description: This work discovers the equivalence relation between quadrilateral meshes and meromorphic quartic. Each quad-mesh induces a conformal structure of the surface, and a meromorphic differential, where the configuration of singular vertices correspond to the configurations the poles and zeros (divisor) of the meroromorphic differential. Due to Riemann surface theory, the configuration of singularities of a quad-mesh satisfies the Abel-Jacobi condition. Inversely, if a satisfies the Abel-Jacobi condition, then there exists a meromorphic quartic differential whose equals to the given one. Furthermore, if the meromorphic quadric differential is with finite, then it also induces a a quad-mesh, the poles and zeros of the meromorphic differential to the singular vertices of the quad-mesh. Besides the theoretic proofs, the computational algorithm for verification of Abel-Jacobi condition is explained in details. Furthermore, constructive algorithm of meromorphic quartic differential on zero surfaces is proposed, which is based on the global algebraic representation of meromorphic. Our experimental results demonstrate the efficiency and efficacy of the algorithm. This opens up a direction for quad-mesh generation using algebraic geometric approach.
MOESM1 of Exosomes derived from human umbilical cord mesenchymal stem cells ameliorate IL-6-induced acute liver injury through miR-455-3p
Creators: name: Shao, Mingyang
name: Xu, Qing
name: Wu, Zhenru
name: Chen, Yuwei
name: Shu, Yuke
name: Cao, Xiaoyue
name: Chen, Menglin
name: Zhang, Bo
name: Zhou, Yongjie
name: Yao, Rong
name: Shi, Yujun
name: Bu, Hong
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Hematology

description: Additional file 1: Figure S1. Identification of the cell morphology of hUC-MSCs cells and macrophages. Figure S2. hUC-MSCs inhibit macrophage secretion of inflammatory factors. Figure S3. (A) The fluorescence results of hUC-MSCs pretreated with GW4869 and cocultured with macrophages. (B) The key sequences of human and murine miR-455-3p were basically identical. Table S1. After deep sequencing of Exos-IL6 and Exos-NC, 31 miRNAs were found to be upregulated and 6 miRNAs were downregulated in the Exos-IL6 group (fold change > 2, p < 0.05).
Field theory for a reaction-diffusion model of quasispecies dynamics
Creators: name: Pastor-Satorras, Romualdo
name: Sole, Ricard V.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Quantitative Biology (q-bio)
subject: FOS: Physical sciences
subject: FOS: Biological sciences

description: RNA viruses are known to replicate with extremely high mutation rates. These rates are actually close to the so-called error threshold. This threshold is in fact a critical point beyond which genetic information is lost through a second-order phase transition, which has been dubbed the ``error catastrophe.'' Here we explore this phenomenon using a field theory approximation to the spatially extended Swetina-Schuster quasispecies model [J. Swetina and P. Schuster, Biophys. Chem. {\bf 16}, 329 (1982)], a single-sharp-peak landscape. In analogy with standard absorbing-state phase transitions, we develop a reaction-diffusion model whose discrete rules mimic the Swetina-Schuster model. The field theory representation of the reaction-diffusion system is constructed. The proposed field theory belongs to the same universality class than a conserved reaction-diffusion model previously proposed [F. van Wijland {\em et al.}, Physica A {\bf 251}, 179 (1998)]. From the field theory, we obtain the full set of exponents that characterize the critical behavior at the error threshold. Our results present the error catastrophe from a new point of view and suggest that spatial degrees of freedom can modify several mean field predictions previously considered, leading to the definition of characteristic exponents that could be experimentally measurable.
description: 13 pages
An Algebraic Roadmap of Particle Theories, Part II: Theoretical checkpoints
Creators: name: Furey, N.
Publisher: name: arXiv
Year: 2023
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: An optimal algebraic model of particle physics has a number of checkpoints to pass. As a minimum, models should $\langle 1 \rangle$ conform to the Coleman-Mandula theorem (or establish a loophole), $\langle 2 \rangle$ evade familiar fermion doubling problems, $\langle 3 \rangle$ naturally explain the Standard Model's chirality, $\langle 4 \rangle$ exclude B-L gauge symmetry at low energy, and $\langle 5 \rangle$ explain the existence of three generations. We demonstrate how the model introduced in [1] passes checkpoints $\langle 1 \rangle, \langle 2 \rangle, \langle 3 \rangle, \langle 4 \rangle$, and has yet to cross $\langle 5 \rangle$. We close by elucidating an unexpected appearance of spacetime symmetries.
description: 6 pages, 1 figure, Second paper in a series. Follows arXiv:2312.12377
Optical excitations in diphenylacetylene based dendrimers studied by a coupled exciton model with off-diagonal disorder
Creators: name: Harigaya, Kikuo
Publisher: name: arXiv
Year: 2001
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Soft Condensed Matter (cond-mat.soft)
subject: Atomic and Molecular Clusters (physics.atm-clus)
subject: Chemical Physics (physics.chem-ph)
subject: Optics (physics.optics)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: A phenomenological coupled exciton model is proposed in order to characterize optical excitations in extended dendrimers. An onsite exciton state is assigned at each phenyl rings and a nearest neighbor hopping integral which obeys the Gaussian distribution is considered between the exciton states. The decreasing optical excitation energy with respect to the dendrimer size indicates the presence of exciton funnels along the backbone of the dendrimers. Therefore, the extended dendrimers can work as artificial fractal antenna systems which capture energy of light. Dynamics of an exciton is also investigated by solving time development of a wavefunction of optical excitations. It is shown that a damping term with a certain magnitude is necessary in order that optical excitations captured at the outer edge of the supermolecule move to the central areas of the molecule.
description: 14 pages; World Scientific's site: http://www.worldscinet.com/journals/ijmpb/13/1319/S0217979299002514.html
Sparse sampling and tensor network representation of two-particle Green's functions
Creators: name: Shinaoka, Hiroshi
name: Geffroy, Dominique
name: Wallerberger, Markus
name: Otsuki, Junya
name: Yoshimi, Kazuyoshi
name: Gull, Emanuel
name: Kuneš, Jan
Publisher: name: arXiv
Year: 2019
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: Many-body calculations at the two-particle level require a compact representation of two-particle Green's functions. In this paper, we introduce a sparse sampling scheme in the Matsubara frequency domain as well as a tensor network representation for two-particle Green's functions. The sparse sampling is based on the intermediate representation basis and allows an accurate extraction of the generalized susceptibility from a reduced set of Matsubara frequencies. The tensor network representation provides a system independent way to compress the information carried by two-particle Green's functions. We demonstrate efficiency of the present scheme for calculations of static and dynamic susceptibilities in single- and two-band Hubbard models in the framework of dynamical mean-field theory.
description: 27 pages in single column format, 12 pages (added missing references)
Detectability and Observer Design for Switched Differential Algebraic Equations
Creators: name: Tanwani, Aneel
name: Trenn, Stephan
Publisher: name: arXiv
Year: 2019
Subjects: subject: Optimization and Control (math.OC)
subject: Systems and Control (eess.SY)
subject: Dynamical Systems (math.DS)
subject: FOS: Mathematics
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: This paper studies detectability for switched linear differential-algebraic equations (DAEs) and its application to the synthesis of observers, which generate asymptotically converging state estimates. Equating detectability to asymptotic stability of zero-output-constrained state trajectories, and building on our work on interval-wise observability, we propose the notion of interval-wise detectability: If the output of the system is constrained to be identically zero over an interval, then the norm of the corresponding state trajectories scales down by a certain factor at the end of that interval. Conditions are provided under which the interval-wise detectability leads to asymptotic stability of zero-output-constrained state trajectories. An application is demonstrated in designing state estimators. Decomposing the state into observable and unobservable components, we show that if the observable component of the system is reset appropriately and persistently, then the estimation error converges to zero asymptotically under the interval-wise detectability assumption.
Area response in wheat production: The Australian wheat-sheep zone
Creators: name: Culas, Richard J.
name: Culas, Richard J.
Publisher: name: Unknown
Year: 2011
Subjects: subject: Farm Management
subject: wheat area supply response
subject: farmer‟s decision parameters
subject: wheat production
subject: Australian wheat-sheep zone

description: This paper investigates the key decision parameters of farmers related to the allocation of land between wheat production and pasture for sheep (wool) production. Wheat area supply response, is estimated across the Australian wheat-sheep zone using data for the period 1991 to 2004. Statistical results reveal that wheat growers in Western Australia are more price responsive than growers in the eastern states. Area adjustment is not significantly different between the regions. Rainfall has a positive influence on wheat production while time-related exogenous factors such as technical progress seemed to have little influence on the wheat yield over this period.
A layered edge-on circumstellar disk around HK Tau B
Creators: name: Duchene, G.
name: Menard, F.
name: Stapelfeldt, K.
name: Duvert, G.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present the first high angular resolution 1.4mm and 2.7mm continuum maps of the T Tauri binary system HK Tau obtained with the Plateau de Bure Interferometer. The contributions of both components are well disentangled at 1.4mm and the star previously known to host an edge-on circumstellar disk, HK Tau B, is elongated along the disk's major axis. The optically bright primary dominates the thermal emission from the system at both wavelengths, confirming that it also has its own circumstellar disk. Its non-detection in scattered light images indicates that the two disks in this binary system are not parallel. Our data further indicate that the circumprimary disk is probably significantly smaller than the circumsecondary disk. We model the millimeter thermal emission from the circumstellar disk surrounding HK Tau B. We show that the disk mass derived from scattered light images cannot reproduce the 1.4mm emission using opacities of the same population of submicron dust grains. However, grain growth alone cannot match all the observed properties of this disk. We propose that this disk contains three separate layers: two thin outer surfaces which contain dust grains that are very similar to those of the ISM, and a disk interior which is relatively massive and/or has experienced limited grain growth with the largest grains significantly smaller than 1mm. Such a structure could naturally result from dust settling in a protoplanetary disk.
description: Accepted fopr publication in A&A, 8 pages, 1 embedded figure
Additional file 2 of Immunological and genetic kinetics from diagnosis to clinical progression in chronic lymphocytic leukemia
Creators: name: Jiménez, Isabel
name: Tazón-Vega, Bárbara
name: Abrisqueta, Pau
name: Nieto, Juan C.
name: Sabela Bobillo
name: Palacio-García, Carles
name: Carabia, Júlia
name: Valdés-Mas, Rafael
name: Munuera, Magdalena
name: Lluís Puigdefàbregas
name: Genís Parra
name: Esteve-Codina, Anna
name: Franco-Jarava, Clara
name: Iacoboni, Gloria
name: Terol, María José
name: García-Marco, José Antonio
name: Crespo, Marta
name: Bosch, Francesc
Publisher: name: figshare
Year: 2021
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 2: Supplementary Table S1. Monoclonal antibodies (mAbs). Supplementary Table S7. Highlighted dysregulated genes in T CLL cells at progression. Supplementary Figure S1. Longitudinal analysis of the CCF of CNVs from paired B-CLL cells at diagnosis and progression before treatment. Comparison of the CCF with 95% CI for each CNV detected per patient (n = 10) between diagnosis and progression. Significantly increased (red lines) and stable CCF (grey lines) are shown. Recurrent CNVs in CLL (del(13q), del(11q), del(17p) and +[12]) are plotted with bold lines and labeled with CNV name: stable CCF (bold black) is shown. Supplementary Figure S2. CD8+ T cell differentiation subsets and PD1 expression in CD8+ T cells from progressing and non-progressing CLL patients. a CD4/CD8 ratio in progressing (n = 19) and non-progressing patients (n = 10) at diagnosis and progression or non-progression. b Absolute numbers of CD8+ T cell differentiation subsets (naive: CCR7+CD45RA+; central memory, CM: CCR7+CD45RA−; effector memory, EM: CCR7−CD45RA− and EM CD45RA+, EMRA: CCR7−CD45RA+) in progressing (n = 19) and non-progressing patients (n = 10) at diagnosis and progression or non-progression. c Absolute numbers of PD1+CD8+ T cells in progressing (left, n = 19) and non-progressing patients (middle, n = 10) at diagnosis and progression or non-progression. Fold change of PD1+CD8+ T cells between time points comparing progressing and non-progressing patients (right). d Percentage of PD1+CD244+ CD8+ T cells in progressing (left, n = 12) and non-progressing patients (middle, n = 9) at diagnosis and progression or non-progression. Fold change of PD1+CD244+CD8+ T cells between time points comparing progressing and non-progressing patients (right). e Percentage of PD1+ 160+ CD8+ T cells in progressing (left, n = 12) and non-progressing patients (middle, n = 9) at diagnosis and progression or non-progression. Fold change of PD1+CD160+CD8+ T cells between time points comparing progressing and non-progressing patients (right). f Density plots of PD1, CD160 and CD244 coexpression in CD8+ T cells in representative patients at diagnosis and progression and at diagnosis and non-progression. Graphs show mean ± SEM or paired values (*P
A Personal Touch: Text Messaging for Loan Repayment
Creators: name: Morten, Melanie
name: Karlan, Dean S.
name: Zinman, Jonathan
name: Morten, Melanie
name: Karlan, Dean S.
name: Zinman, Jonathan
Publisher: name: Unknown
Year: 2012
Subjects: subject: Consumer/Household Economics
subject: Financial Economics
subject: Research and Development/Tech Change/Emerging Technologies
subject: microcredit
subject: microfinance
subject: randomized evaluation
subject: development finance

description: We worked with two microlenders to test impacts of randomly assigned reminders for loan repayments in the “text messaging capital of the world”. We do not find strong evidence that loss versus gain framing or messaging timing matter. Messages only robustly improve repayment when they include the loan officer’s name. This effect holds for clients serviced by the loan officer previously but not for first-time borrowers. Taken together, the results highlight the potential and limits of communications technology for mitigating moral hazard, and suggest that personal obligation/reciprocity between borrowers and bank employees can be harnessed to help overcome market failures.
Additional file 2 of Exome-based investigation of the genetic basis of human pigmentary glaucoma
Creators: name: van der Heide, Carly
name: Goar, Wes
name: Meyer, Kacie J.
name: Alward, Wallace L. M.
name: Boese, Erin A.
name: Sears, Nathan C.
name: Roos, Ben R.
name: Kwon, Young H.
name: DeLuca, Adam P.
name: Siggs, Owen M.
name: Gonzaga-Jauregui, Claudia
name: Sheffield, Val C.
name: Wang, Kai
name: Stone, Edwin M.
name: Mullins, Robert F.
name: Anderson, Michael G.
name: Fan, Bao Jian
name: Ritch, Robert
name: Craig, Jamie E.
name: Wiggs, Janey L.
name: Scheetz, Todd E.
name: Fingert, John H.
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2: Supplementary Table 2. Secondary analysis: mutations detected in candidate genes. Single instances of loss-of-function mutations were detected in three of the candidate genes in the secondary analysis.
An Algebraic Roadmap of Particle Theories, Part III: Intersections
Creators: name: Furey, N.
Publisher: name: arXiv
Year: 2023
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In this article, we bypass the detailed symmetry breaking pathways established in [1]. Instead, a direct route from the Spin(10) model to the Standard Model is enabled via a single algebraic constraint. This single constraint, however, may be reconfigured as a requirement that three $\mathfrak{so}(10)$ actions coincide on a fixed space of multi-vector fermions. This $\mathfrak{so}(10) \mapsto \mathfrak{su}(3)_{C} \oplus \mathfrak{su}(2)_{L} \oplus{u}(1)_{Y}$ breaking (from a three-way intersection) mirrors, in certain ways, the $\mathfrak{so}(8) \mapsto \mathfrak{g}_2$ breaking (from a three-way intersection) in the context of octonionic triality. By extending this result to include quaternions and complex numbers, we find that a five-way intersection breaks $\mathfrak{so}(10) \mapsto \mathfrak{su}(3)_{C} \oplus \mathfrak{u}(1)_{Q}$. These are the Standard Model's unbroken gauge symmetries, post-Higgs-mechanism.
description: 4 pages, 4 figures, Third paper in a series. Follows arXiv:2312.12377 and arXiv:2312.12799
Unitarity of Deconstructed Five-Dimensional Yang-Mills Theory
Creators: name: Chivukula, R. Sekhar
name: He, Hong-Jian
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The low-energy properties of a compactified five-dimensional gauge theory can be reproduced in a four-dimensional theory with a replicated gauge group and an appropriate gauge symmetry breaking pattern. The lightest vector bosons in these "deconstructed" or "remodeled" theories have masses and couplings approximately equal to those of the Kaluza-Klein tower of massive vector states present in a compactified higher-dimensional gauge theory. We analyze the unitarity of low-energy scattering of the massive vector bosons in a deconstructed theory, and examine the relationship between the scale of unitarity violation and the scale of the underlying chiral symmetry breaking dynamics which breaks the replicated gauge groups. As in the case of compactified five-dimensional gauge theories, low-energy unitarity is ensured through an interlacing cancellation among contributions from the tower of massive vector bosons. We show that the behavior of these scattering amplitudes is manifest without such intricate cancellations in the scattering of the would-be Goldstone bosons of the deconstructed theory. Unlike compactified five-dimensional gauge theories, the amplitude for longitudinal vector boson scattering in deconstructed theories does grow with energy, though this effect is suppressed by 1/(N+1), with N+1 being the number of replicated gauge groups.
description: 11 pages, 1 eps figure
Additional file 1 of Implementation and utilization of gynecological teaching associate and male urogenital teaching associate programs: a scoping review
Creators: name: Hopkins, Holly
name: Weaks, Chelsea
name: Napier, Elise
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 1. Title of Data: Studies Meeting Inclusion Criteria.