cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
MOESM5 of Development and validation of a new tumor-based gene signature predicting prognosis of HBV/HCV-included resected hepatocellular carcinoma patients
Creators: name: Zhu, Gui-Qi
name: Yang, Yi
name: Chen, Er-Bao
name: Wang, Biao
name: Xiao, Kun
name: Shi, Shi-Ming
name: Zhou, Zheng-Jun
name: Zhou, Shao-Lai
name: Wang, Zheng
name: Shi, Ying-Hong
name: Fan, Jia
name: Zhou, Jian
name: Liu, Tian-Shu
name: Dai, Zhi
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Additional file 5: Table S3. Correlation between 9-gene signature and clinicopathologic characteristics from training and validation cohort.
Additional file 1 of Maternal uniparental disomy of chromosome 7: how chromosome 7-encoded imprinted genes contribute to the Silver–Russell phenotype
Creators: name: Begemann, Matthias
name: Lengyel, Anna
name: Pinti, Eva
name: Kovács, Árpád Ferenc
name: Fekete, György
name: Stratmann, Svea
name: Krause, Jeremias
name: Elbracht, Miriam
name: Kraft, Florian
name: Eggermann, Thomas
Publisher: name: figshare
Year: 2025
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file1 Supplementary Figure 1: Results from qPCR studies in fibroblasts from the UPD7M and UPD7qM patients for different genes localised in imprinted regions on chromosomes 6, 7, 11 and 14. Quantitative Real-Time PCR (qRT-PCR) was performed using Platinum qPCR SuperMix UDG (Invitrogen, Carlsbad/CA, USA), TaqMan® Gene Expression Master Mix (LifeTechnologies, Darmstadt, Germany) according to standard protocols. qRT-PCR reactions were run in 10 μl reactions, using the standard reaction protocol. Further details are available on request. The qRT-PCR runs were performed on a StepOnePlus with the StepOneTM-Software v.2.2.1 (Applied Biosystems) and the results were calculated with the ΔΔCT method. The reference gene (TBP) and the target genes were always measured in the same qRT-PCR run. The individual experiments were repeated in three biological replicates using different RNA isolates. The control group consisted of fibroblasts derived from healthy individuals of mixed age (7y - >40y) and gender. The individual experiments were repeated in three biological replicates using different RNA isolates. (PDF 131 KB)
Additional file 3: of A comparison of methods for estimating substitution rates from ancient DNA sequence data
Creators: name: K. Tong
name: Duchêne, David
name: Duchêne, Sebastián
name: Geoghegan, Jemma
name: Ho, Simon
Publisher: name: figshare
Year: 2018
Subjects: subject: Biotechnology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Marine Biology

description: Figure S2. Pairwise comparisons of rate estimates from regression of root-to-tip distances in TempEst, least-squares dating in LSD, and Bayesian inference in BEAST. Comparisons are between BEAST and TempEst (top), BEAST and LSD (middle), and TempEst and LSD ottom). The closer the fit of the points to the solid lines, the greater the congruence between the estimates from the two methods being compared. Dashed lines indicate a line of best fit for the estimates. The two distinct clouds of points within each panel represent the estimates from the data simulated with low and high rates. Proportional difference and bias were calculated as in a previous study by Duchêne et al. [31]. Proportional difference is the difference in the estimates between two methods, divided by the first rate estimate. Bias is the proportion of data sets for which the estimate along the x-axis is greater than that along the y-axis. (PDF 199 kb)
Two-population replicator dynamics and number of Nash equilibria in random matrix games
Creators: name: Galla, Tobias
Publisher: name: arXiv
Year: 2006
Subjects: subject: Populations and Evolution (q-bio.PE)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Biological sciences
subject: FOS: Physical sciences

description: We study the connection between the evolutionary replicator dynamics and the number of Nash equilibria in large random bi-matrix games. Using techniques of disordered systems theory we compute the statistical properties of both, the fixed points of the dynamics and the Nash equilibria. Except for the special case of zero-sum games one finds a transition as a function of the so-called co-operation pressure between a phase in which there is a unique stable fixed point of the dynamics coinciding with a unique Nash equilibrium, and an unstable phase in which there are exponentially many Nash equilibria with statistical properties different from the stationary state of the replicator equations. Our analytical results are confirmed by numerical simulations of the replicator dynamics, and by explicit enumeration of Nash equilibria.
description: 9 pages, 2x2 figures
title: AN, Registre des écrous du Châtelet, Y5266, f. p1000597
Creators: name: Claustre, Julie
name: Nationales, Archives
name: Archives Nationales
name: Claustre, Julie
name: ArchivesNationales/J.CLAUSTRE/H.REGAZZI/2020
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Châtelet
subject: registre

description: Registre des écrous du Châtelet, Archives Nationales, Y5266. Numérisation en mode image.
description: Bibliographic citation: Archives Nationales, Registre des écrous du Châtelet, Y5266, f. p1000597
Normality in terms of distances and contractions
Creators: name: Colebunders, E.
name: Sioen, M.
name: Haute, W. Van Den
Publisher: name: arXiv
Year: 2017
Subjects: subject: General Topology (math.GN)
subject: FOS: Mathematics

description: The main purpose of this paper is to explore normality in terms of distances between points and sets. We prove some important consequences on realvalued contractions, i.e. functions not enlarging the distance, showing that as in the classical context of closures and continuous maps, normality in terms of distances based on an appropriate numerical notion of $γ$-separation of sets, has far reaching consequences on real valued contractive maps, where the real line is endowed with the Euclidean metric. We show that normality is equivalent to (1) separation of $γ$-separated sets by some Urysohn contractive map, (2) to Katětov-Tong's interpolation, stating that for bounded positive realvalued functions, between an upper and a larger lower regular function, there exists a contractive interpolating map and (3) to Tietze's extension theorem stating that certain contractions defined on a subspace can be contractively extended to the whole space. The appropriate setting for these investigations is the category of approach spaces, but the results have (quasi)-metric counterparts in terms of non-expansive maps. Moreover when restricted to topological spaces, classical normality and its equivalence to separation by a Urysohn continuous map, to Katětov-Tong's interpolation for semicontinuous maps and to Tietze's extension theorem for continuous maps are recovered.
Generalized Toda Theories from WZNW Reduction
Creators: name: Wyllard, Niclas
Publisher: name: arXiv
Year: 1996
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We reconsider the, by Brink and Vasiliev, recently proposed generalized Toda field theories using the framework of WZNW$\rightarrow$Toda reduction. The reduced theory has a gauge symmetry which can be fixed in various ways. We discuss some different gauge choices. In particular we study the ${\cal W}$ algebra associated with the generalized model in some different realizations, corresponding to different gauge choices. We also investigate the mapping between the Toda field and a free field and show the relation between the ${\cal W}$ algebra generators expressed in terms of the two different fields. All results apply also to the case of ordinary Toda theories.
description: 18 pages, Plain LaTeX
Additional file 2: of Microarray analysis of human keratinocytes from different anatomic sites reveals site-specific immune signaling and responses to human papillomavirus type 16 transfection
Creators: name: Mohd Israr
name: Rosenthal, David
name: Frejo-Navarro, Lidia
name: DeVoti, James
name: Meyers, Craig
name: Bonagura, Vincent
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: Table S1. Genes that are differentially expressed by stratified human keratinocytes from different anatomical sites after HPV16 transfection. (DOCX 16 kb)
Additional file 1: of Identification and characterization of NF-Y gene family in walnut (Juglans regia L.)
Creators: name: Quan, Shaowen
name: Niu, Jianxin
name: Zhou, Li
name: Xu, Hang
name: Ma, Li
name: Qin, Yang
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Figure S1. The conserved regions in the full length of the JrNF-Ys. (DOC 2960 kb)
A New Approach to Mass Measurements of UHECR: Horizontal Air Showers
Creators: name: Zas, Enrique
Publisher: name: arXiv
Year: 2000
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The role of Horizontal Showers induced by cosmic rays is discussed in detail. A new approach to the calculation of the muon component in horizontal air showers induced by protons, heavier nuclei or photons is presented which allows a simple analytical evaluation of the muon density profiles at ground level. The results of the first application of these results to horizontal air showers detected at the Haverah Park Array by the recently started {\sl Leeds-Santiago collaboration}, leading to important restrictions on composition at ultra high energies, are reported.
description: 16 pages, LaTeX, aipproc, Talk given at the International Workshop on Observing UHECR from space and earth, August 9-12-2000, Metepec, Puebla, Mexico
The -KTS splice variant of WT1 is essential for ovarian determination in mice.
Creators: name: Gregoire, Elodie P
name: De Cian, Marie-Cécile
name: Migale, Roberta
name: Perea-Gomez, Aitana
name: Schaub, Sébastien
name: Bellido-Carreras, Natividad
name: Stévant, Isabelle
name: Mayère, Chloé
name: Neirijnck, Yasmine
name: Loubat, Agnès
name: Rivaud, Paul
name: Sopena, Miriam Llorian
name: Lachambre, Simon
name: Linssen, Margot M
name: Hohenstein, Peter
name: Lovell-Badge, Robin
name: Nef, Serge
name: Chalmel, Frédéric
name: Schedl, Andreas
name: Chaboissier, Marie-Christine
Publisher: name: The Francis Crick Institute
Year: 2024
Subjects: classificationCode: Tumour Biology
subject: Tumour Biology
classificationCode: Stem Cells
subject: Stem Cells
classificationCode: Chemical Biology & High Throughput
subject: Chemical Biology & High Throughput
classificationCode: Genetics & Genomics
subject: Genetics & Genomics
classificationCode: Developmental Biology
subject: Developmental Biology
classificationCode: Computational & Systems Biology
subject: Computational & Systems Biology
classificationCode: Genome Integrity & Repair
subject: Genome Integrity & Repair
classificationCode: Neurosciences
subject: Neurosciences
subject: FOS: Clinical medicine
classificationCode: Model organisms
subject: Model organisms

description: Sex determination in mammals depends on the differentiation of the supporting lineage of the gonads into Sertoli or pregranulosa cells that govern testis and ovary development, respectively. Although the Y-linked testis-determining gene Sry has been identified, the ovarian-determining factor remains unknown. In this study, we identified -KTS, a major, alternatively spliced isoform of the Wilms tumor suppressor WT1, as a key determinant of female sex determination. Loss of -KTS variants blocked gonadal differentiation in mice, whereas increased expression, as found in Frasier syndrome, induced precocious differentiation of ovaries independently of their genetic sex. In XY embryos, this antagonized Sry expression, resulting in male-to-female sex reversal. Our results identify -KTS as an ovarian-determining factor and demonstrate that its time of activation is critical in gonadal sex differentiation.
MOESM8 of Development and validation of a new tumor-based gene signature predicting prognosis of HBV/HCV-included resected hepatocellular carcinoma patients
Creators: name: Zhu, Gui-Qi
name: Yang, Yi
name: Chen, Er-Bao
name: Wang, Biao
name: Xiao, Kun
name: Shi, Shi-Ming
name: Zhou, Zheng-Jun
name: Zhou, Shao-Lai
name: Wang, Zheng
name: Shi, Ying-Hong
name: Fan, Jia
name: Zhou, Jian
name: Liu, Tian-Shu
name: Dai, Zhi
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Additional file 8: Table S4. Multivariable Cox regression of overall survival for patients with HBV-DNA positive tumors.
Generation of 70-fs pulses at 2.86 μm from a mid-infrared fiber laser
Creators: name: Woodward, R. I.
name: Hudson, D. D.
name: Fuerbach, A.
name: Jackson, S. D.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We propose and demonstrate a simple route to few-optical-cycle pulse generation from a mid-infrared fiber laser through nonlinear compression of pulses from a holmium-doped fiber oscillator using a short length of chalcogenide fiber and a grating pair. Pulses from the oscillator with 265-fs duration at 2.86 μm are spectrally broadened through self-phase modulation in step-index As2S3 fiber to 141-nm bandwidth and then re-compressed to 70 fs (7.3 optical cycles). These are the shortest pulses from a mid-infrared fiber system to date, and we note that our system is compact, robust, and uses only commercially available components. The scalability of this approach is also discussed, supported by numerical modeling.
description: Published in Optics Letters
Lagrangian Becchi-Rouet-Stora-Tyutin treatment of collective coordinates
Creators: name: Garrahan, Juan P.
name: Kruczenski, Martin
name: Bes, Daniel R.
Publisher: name: arXiv
Year: 1996
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The Becchi-Rouet-Stora-Tyutin (BRST) treatment for the quantization of collective coordinates is considered in the Lagrangian formalism. The motion of a particle in a Riemannian manifold is studied in the case when the classical solutions break a non-abelian global invariance of the action. Collective coordinates are introduced, and the resulting gauge theory is quantized in the BRST antifield formalism. The partition function is computed perturbatively to two-loops, and it is shown that the results are independent of gauge-fixing parameters.
description: LaTeX file, 26 pages, PostScript figures at end of file
Additional file 3: of Association of pulmonary, cardiovascular, and hematologic metrics with carbon nanotube and nanofiber exposure among U.S. workers: a cross-sectional study
Creators: name: Schubauer-Berigan, Mary
name: Dahm, Matthew
name: Erdely, Aaron
name: Beard, John
name: M. Eileen Birch
name: Evans, Douglas
name: Fernback, Joseph
name: Mercer, Robert
name: Bertke, Stephen
name: Eye, Tracy
name: Perio, Marie De
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Marine Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Supplementary information. (DOCX 24 kb)
Dynamic density structure factor of a unitary Fermi gas at finite temperature
Creators: name: Guo, Hao
name: He, Yan
name: He, Lianyi
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We present a theoretical investigation of the dynamic density structure factor of a strongly interacting Fermi gas near a Feshbach resonance at finite temperature. The study is based on a gauge invariant linear response theory. The theory is consistent with a diagrammatic approach for the equilibrium state taking into account the pair fluctuation effects and respects some important restrictions like the $f$-sum rule. Our numerical results show that the dynamic density structure factor at large incoming momentum and at half recoil frequency has a qualitatively similar behavior as the order parameter, which can signify the appearance of the condensate. This qualitatively agrees with the recent Bragg spectroscopy experiment results. We also present the results at small incoming momentum.
description: 7 pages, 4 figures
Frequency decomposition of conditional Granger causality and application to multivariate neural field potential data
Creators: name: Chen, Yonghong
name: Bressler, Steven L.
name: Ding, Mingzhou
Publisher: name: arXiv
Year: 2006
Subjects: subject: Neurons and Cognition (q-bio.NC)
subject: Quantitative Methods (q-bio.QM)
subject: FOS: Biological sciences

description: It is often useful in multivariate time series analysis to determine statistical causal relations between different time series. Granger causality is a fundamental measure for this purpose. Yet the traditional pairwise approach to Granger causality analysis may not clearly distinguish between direct causal influences from one time series to another and indirect ones acting through a third time series. In order to differentiate direct from indirect Granger causality, a conditional Granger causality measure in the frequency domain is derived based on a partition matrix technique. Simulations and an application to neural field potential time series are demonstrated to validate the method.
description: 18 pages, 6 figures, Journal published
The Heterogeneous Ensembles of Standard Classification Algorithms (HESCA): the Whole is Greater than the Sum of its Parts
Creators: name: Large, James
name: Lines, Jason
name: Bagnall, Anthony
Publisher: name: arXiv
Year: 2017
Subjects: subject: Machine Learning (cs.LG)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: Building classification models is an intrinsically practical exercise that requires many design decisions prior to deployment. We aim to provide some guidance in this decision making process. Specifically, given a classification problem with real valued attributes, we consider which classifier or family of classifiers should one use. Strong contenders are tree based homogeneous ensembles, support vector machines or deep neural networks. All three families of model could claim to be state-of-the-art, and yet it is not clear when one is preferable to the others. Our extensive experiments with over 200 data sets from two distinct archives demonstrate that, rather than choose a single family and expend computing resources on optimising that model, it is significantly better to build simpler versions of classifiers from each family and ensemble. We show that the Heterogeneous Ensembles of Standard Classification Algorithms (HESCA), which ensembles based on error estimates formed on the train data, is significantly better (in terms of error, balanced error, negative log likelihood and area under the ROC curve) than its individual components, picking the component that is best on train data, and a support vector machine tuned over 1089 different parameter configurations. We demonstrate HESCA+, which contains a deep neural network, a support vector machine and two decision tree forests, is significantly better than its components, picking the best component, and HESCA. We analyse the results further and find that HESCA and HESCA+ are of particular value when the train set size is relatively small and the problem has multiple classes. HESCA is a fast approach that is, on average, as good as state-of-the-art classifiers, whereas HESCA+ is significantly better than average and represents a strong benchmark for future research.
Lettre de Jacques Le Brigant à Claude-Urbain de Retz de Bressolles, baron de Servières, 1781-08-16
Creators: name: Le Brigant, Jacques
name: Brigant, Jacques Le
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2021
Subjects: Etude des langues

description: [transcription] Le sousignant, aussi désireux qu'impatient de savoir des nouvelles de son respectable doyen, Monsieur Séguier de Nîmes, met ce paquet à son adresse en souhaitant de tout son coeur qu'il se trouve en bonne santé.

Il lui adresse l'avant-propos d'un ouvrage qu'on l'engage à donner et le suffrage de Monsieur Séguier pour la grammaire qui l'a précédé, est un des motifs qui l'a le plus puissamment excité, comme un de ceux qui le flatte le plus. Il est touché de n'avoir pas eu le temps de transcrire le morceau de sa main, il est de celle d'un de ses 22 enfants qui n'est pas écrivain fameux encore.

Monsieur Séguier saura que son ami Monsieur de Servière est à Paris et recevra les assurances [fol. 235 v] les plus sincères du respect intime du plus obéissant de ses serviteurs.

Le Brigant avocat

A Tréguier en Bretagne

Le 6 août 1781.

Si l'on répondait, première enveloppe tant adressée pour Monsieur Le Brigant, seconde au revers à Monsieur Yvon subdélégué à Tréguier.

La dernière enveloppe à Monsieur Caze de la Bove intendant de Bretagne à Rennes.
description: [personnes citées] Claude-Urbain de Retz de Bressolles, baron de Servières, Gaspard-Louis Caze de La Bôve, M. Yvon de (Subdélégué) La Breterye
description: Source: [lieu de Conservation] Nîmes, Bibliothèque Carré d'Art [cote]ms. 135_14, fol. 235
description: Source: ark:/12148/btv1b100151504
Supernovae in the nuclear regions of starburst galaxies
Creators: name: Mattila, S.
name: Meikle, W. P. S.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The feasibility of using near-infrared observations to discover supernovae in the nuclear and circumnuclear regions of nearby starburst galaxies is investigated. We provide updated estimates of the intrinsic core-collapse supernova rates in these regions. We discuss the problem of extinction, and present new estimates of the extinction towards 33 supernova remnants in the starburst galaxy M 82. This is done using H I and H_2 column density measurements. We estimate the molecular to atomic hydrogen mass ratio to be 7.4 +- 1.0 in M 82. We have assembled near-infrared photometric data for a total of 13 core-collapse supernovae, some unpublished hitherto. This constitutes the largest database of IR light curves for such events. We show that the IR light curves fall into two classes, ``ordinary'' and ``slow-declining''. Template JHKL light curves are derived for both classes. For ordinary core-collapse supernovae, the average peak JHKL absolute magnitudes are -18.4, -18.6, -18.6, and -19.0 respectively. The slow-declining core-collapse SNe are found to be significantly more luminous than the ordinary events, even at early times, having average peak JHKL absolute magnitudes of -19.9, -20.0, -20.0, and -20.4 respectively. We investigate the efficiency of a computerised image subtraction method in supernova detection. We then carry out a Monte Carlo simulation of a supernova search using K-band images of NGC 5962. The effects of extinction and observing strategy are discussed. We conclude that a modest observational programme will be able to discover a number of nuclear supernovae.
description: 19 pages, 7 figures; accepted in MNRAS
Additional file 2: of Research agenda-setting on cash programming for health and nutrition in humanitarian settings
Creators: name: Woodward, Aniek
name: Griekspoor, Andre
name: Doocy, Shannon
name: Spiegel, Paul
name: Savage, Kevin
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: â Research questionsâ . This document includes all consulted research questions for each of the 22 research categories. (DOCX 70Â kb)
Dynamic Asymmetric Communication
Creators: name: Gagie, Travis
Publisher: name: arXiv
Year: 2005
Subjects: subject: Information Theory (cs.IT)
subject: FOS: Computer and information sciences
subject: E.4

description: We show how any dynamic instantaneous compression algorithm can be converted to an asymmetric communication protocol, with which a server with high bandwidth can help clients with low bandwidth send it messages. Unlike previous authors, we do not assume the server knows the messages' distribution, and our protocols are the first to use only one round of communication for each message.
description: Previous versions appeared at DCC 06 and SIROCCO 06; current version is preliminary journal version
MOESM9 of Development and validation of a new tumor-based gene signature predicting prognosis of HBV/HCV-included resected hepatocellular carcinoma patients
Creators: name: Zhu, Gui-Qi
name: Yang, Yi
name: Chen, Er-Bao
name: Wang, Biao
name: Xiao, Kun
name: Shi, Shi-Ming
name: Zhou, Zheng-Jun
name: Zhou, Shao-Lai
name: Wang, Zheng
name: Shi, Ying-Hong
name: Fan, Jia
name: Zhou, Jian
name: Liu, Tian-Shu
name: Dai, Zhi
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Additional file 9: Table S5. Comparison of the 9-gene signature and the 5-genes signature to predict overall survival using bivariate analysis in GEO set of patients (n=80).
Vacuum Quantum Stress Tensor Fluctuations: A Diagonalization Approach
Creators: name: Schiappacasse, Enrico D.
name: Fewster, Christopher J.
name: Ford, L. H.
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Large vacuum fluctuations of a quantum stress tensor operator can be described by the asymptotic behavior of the probability distribution of the time or spacetime averaged operator. Here we focus on the case of stress tensor operators averaged with a sampling function in time. The Minkowski vacuum state is not an eigenstate of the time-averaged operator, but can be expanded in terms of its eigenstates. We calculate the probability distribution and the cumulative probability distribution for obtaining a given value in a measurement of the time-averaged operator taken in the vacuum state. In these calculations, we use the normal ordered square of the time derivative of a massless scalar field in Minkowski spacetime as an example of a stress tensor operator. We analyze the rate of decrease of the tail of the probability distribution for different temporal sampling functions, such as compactly supported functions and the Lorentzian function. We find that the tails decrease relatively slowly, as exponentials of fractional powers, in agreement with previous work using the moments of the distribution. Our results lead additional support to the conclusion that large vacuum stress tensor fluctuations are more probable than large thermal fluctuations, and may have observable effects.
description: 30 pages, 3 figures
Entropy of the BTZ Black Hole in 2+1 Dimensions
Creators: name: Kim, Sung-Won
name: Kim, Won T.
name: Park, Young-Jai
name: Shin, Hyeonjoon
Publisher: name: arXiv
Year: 1996
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We semi-classically calculate the entropy of a scalar field in the background of the BTZ black hole, and derive the perimeter law of the entropy. The proper length from the horizon to the ultraviolet cutoff is independent of both the mass and the angular momentum of the black hole. It is shown that the superradiant scattering modes give the sub-leading order contribution to the entropy while the non-superradiant modes give the leading order one, and thus superradiant effect is minor.
description: 13 pages, latex, no figures, superradiant part and many divergences are seriously reconsidered
Additional file 2: of A comparison of methods for estimating substitution rates from ancient DNA sequence data
Creators: name: K. Tong
name: Duchêne, David
name: Duchêne, Sebastián
name: Geoghegan, Jemma
name: Ho, Simon
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Table S1. One-sample Wilcoxon tests of errors in rate estimates obtained using TempEst, LSD, and BEAST. Significant results are indicated in bold font. Table S2. Mann-Whitney-Wilcoxon pairwise comparisons between standardized errors in rate estimates obtained using TempEst. Rows and columns correspond to the 12 simulation scenarios. Significant results are indicated in bold font. Table S3. Mann-Whitney-Wilcoxon pairwise comparisons between standardized errors in rate estimates obtained using LSD. Rows and columns correspond to the 12 simulation scenarios. Significant results are indicated in bold font. Table S4. Mann-Whitney-Wilcoxon pairwise comparisons between standardized errors in rate estimates obtained using BEAST. Rows and columns correspond to the 12 simulation scenarios. Significant results are indicated in bold font. Table S5. Marginal likelihoods of different combinations of clock models and tree priors for six mitogenomic data sets. (DOCX 36 kb)
Local breaking of four-fold rotational symmetry by short-range magnetic order in heavily overdoped Ba(Fe$_{1-x}$Cu$_{x}$)$_{2}$As$_{2}$
Creators: name: Wang, Weiyi
name: Song, Yu
name: Hu, Ding
name: Li, Yu
name: Zhang, Rui
name: Harriger, L. W.
name: Tian, Wei
name: Cao, Huibo
name: Dai, Pengcheng
Publisher: name: arXiv
Year: 2017
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We investigate Cu-doped Ba(Fe$_{1-x}$Cu$_x$)$_2$As$_2$ with transport, magnetic susceptibility, and elastic neutron scattering measurements. In the heavily Cu-doped regime where long-range stripe-type antiferromagnetic order in BaFe$_2$As$_2$ is suppressed, Ba(Fe$_{1-x}$Cu$_x$)$_2$As$_2$ (0.145 $\leq x \leq$ 0.553) samples exhibit spin-glass-like behavior in magnetic susceptibility and insulating-like temperature dependence in electrical transport. Using elastic neutron scattering, we find stripe-type short-range magnetic order in the spin-glass region identified by susceptibility measurements. The persistence of short-range magnetic order over a large doping range in Ba(Fe$_{1-x}$Cu$_x$)$_2$As$_2$ likely arises from local arrangements of Fe and Cu that favor magnetic order, with Cu acting as vacancies relieving magnetic frustration and degeneracy. These results indicate locally broken four-fold rotational symmetry, suggesting that stripe-type magnetism is ubiquitous in iron pnictides.
description: accepted by Physical Review B Rapid Communications
Additional file 2 of Anti-osteosarcoma effect of antiserum against cross antigen TPD52 between osteosarcoma and Trichinella spiralis
Creators: name: Yue, Tao-Tao
name: Zhang, Nan
name: Li, Jian-Hua
name: Lu, Xiang-Yun
name: Wang, Xiao-Cen
name: Li, Xin
name: Zhang, Hong-Bo
name: Cheng, Shu-Qin
name: Wang, Bo-Bo
name: Gong, Peng-Tao
name: Zhang, Xi-Chen
Publisher: name: figshare
Year: 2021
Subjects: subject: Physical Sciences not elsewhere classified
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Hematology

description: Additional file 2: Table S2. Information on seven antigenic genes obtained by screening.
title: ADCO, Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Cart. 32 (G 136), 745 folios, f. 1330
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi

description: Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Archives départementales de la Côte-d'Or, Cart. 32 (G 136), 745 folios, f. 1330, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Archives départementales de la Côte-d'Or, Cart. 32 (G 136), 745 folios, f. 1330, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
Additional file 3 of Anti-osteosarcoma effect of antiserum against cross antigen TPD52 between osteosarcoma and Trichinella spiralis
Creators: name: Yue, Tao-Tao
name: Zhang, Nan
name: Li, Jian-Hua
name: Lu, Xiang-Yun
name: Wang, Xiao-Cen
name: Li, Xin
name: Zhang, Hong-Bo
name: Cheng, Shu-Qin
name: Wang, Bo-Bo
name: Gong, Peng-Tao
name: Zhang, Xi-Chen
Publisher: name: figshare
Year: 2021
Subjects: subject: Physical Sciences not elsewhere classified
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Hematology

description: Additional file 3: Table S3. Anti-TPD52 antiserum titre detection (OD450).
Granger Causality: Basic Theory and Application to Neuroscience
Creators: name: Ding, Mingzhou
name: Chen, Yonghong
name: Bressler, Steven L.
Publisher: name: arXiv
Year: 2006
Subjects: subject: Quantitative Methods (q-bio.QM)
subject: FOS: Biological sciences

description: Multi-electrode neurophysiological recordings produce massive quantities of data. Multivariate time series analysis provides the basic framework for analyzing the patterns of neural interactions in these data. It has long been recognized that neural interactions are directional. Being able to assess the directionality of neuronal interactions is thus a highly desired capability for understanding the cooperative nature of neural computation. Research over the last few years has shown that Granger causality is a key technique to furnish this capability. The main goal of this article is to provide an expository introduction to the concept of Granger causality. Mathematical frameworks for both bivariate Granger causality and conditional Granger causality are developed in detail with particular emphasis on their spectral representations. The technique is demonstrated in numerical examples where the exact answers of causal influences are known. It is then applied to analyze multichannel local field potentials recorded from monkeys performing a visuomotor task. Our results are shown to be physiologically interpretable and yield new insights into the dynamical organization of large-scale oscillatory cortical networks.
Quantum correlations across two octaves from combined up and down conversion
Creators: name: Li, Jingyan
name: Olsen, M. K.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We propose and analyse a cascaded optical parametric system which involves three interacting modes across two octaves of frequency difference. Our system, combining degenerate optical parametric oscillation (OPO) with second harmonic generation (SHG), promises to be a useful source of squeezed and entangled light at three differing frequencies. We show how changes in damping rates and the ratio of the two concurrent nonlinearities affect the quantum correlations in the output fields. We analyse the threshold behaviour, showing how the normal OPO threshold is changed by the addition of the SHG interactions. We also find that the inclusion of the OPO interaction removes the self-pulsing behaviour found in normal SHG. Finally, we show how the Einstein-Podolsky-Rosen correlations can be controlled by the injection of a coherent seed field at the lower frequency.
description: 23 pages, 11 figures, theory
Asteroseismology of the ZZ Ceti star KUV 08368+4026
Creators: name: Li, C.
name: Fu, J. -N.
name: Vauclair, G.
name: Dolez, N.
name: Fox-Machedo, L.
name: Michel, R.
name: Chavez, M.
name: Bertone, E.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Asteroseismology is a unique tool to explore the internal structure of stars through both observational and theoretical research. The internal structure of pulsating hydrogen shell white dwarfs (ZZ Ceti stars) detected by asteroseismology is regarded as the representative of all DA white dwarfs. Observations for KUV~08368+4026, which locates in the middle of the ZZ Ceti instability strip, have been carried out in 1999 and from 2009 to 2012 with either single-site runs or multisite campaigns. Time-series photometric data of about 300 hours were collected in total. Through data reduction and analysis, 30 frequencies were extracted, including four triplets, two doublets, one single mode and further signals. The independent modes are identified as either l=1 or l=2 modes. Hence, a rotation period of $5.52\pm 0.22$ days was deduced from the period spacing in the multiplets. Theoretical static models were built and a best fit model for KUV~08368+4026 was obtained with $0.692\pm0.002$ solar mass, $(2.92\pm0.02)\times 10^{-3}$ solar luminosity and the hydrogen mass fraction of $10^{-4}$ stellar mass.
description: 9 pages, 7 figures
Friction, Free Axes of Rotation and Entropy
Creators: name: Kazachkov, Alexander
name: Multanen, Victor
name: Danchuk, Viktor
name: Frenkel, Mark
name: Bormashenko, Edward
Publisher: name: arXiv
Year: 2017
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: Friction forces acting on rotators may promote their alignment and therefore eliminate degrees of freedom in their movement. The alignment of rotators by friction force was demonstrated by experiments performed with different spinners, demonstrating how friction generates negentropy in a system of rotators. A gas of rigid rotators influenced by friction force is considered. The orientational negentropy generated by a friction force was estimated with the Sackur-Tetrode equation. The minimal change in total entropy of a system of rotators, corresponding to their eventual alignment, decreases with temperature. The reported effect may be of the primary importance for a phase equilibrium and motion of ubiquitous colloidal and granular systems.
description: 10 pages, 7 images
The Discovery of an Outburst and Pulsed X-ray Flux from SMC X-2 from RXTE Observations
Creators: name: Corbet, R. H. D.
name: Marshall, F. E.
name: Coe, M. J.
name: Laycock, S.
name: Handler, G.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Rossi X-ray Timing Explorer All Sky Monitor observations of SMC X-2 show that the source experienced an outburst in January to April 2000 reaching a peak luminosity of greater than ~10^38 ergs s^-1. RXTE Proportional Counter Array observations during this outburst reveal the presence of pulsations with a 2.37s period. However, optical photometry of the optical counterpart showed the source to be still significantly fainter than it was more than half a year after the outburst in the 1970s when SMC X-2 was discovered.
description: Accepted for publication in Astrophysical Journal Letters
Additional file 1 of Anti-osteosarcoma effect of antiserum against cross antigen TPD52 between osteosarcoma and Trichinella spiralis
Creators: name: Yue, Tao-Tao
name: Zhang, Nan
name: Li, Jian-Hua
name: Lu, Xiang-Yun
name: Wang, Xiao-Cen
name: Li, Xin
name: Zhang, Hong-Bo
name: Cheng, Shu-Qin
name: Wang, Bo-Bo
name: Gong, Peng-Tao
name: Zhang, Xi-Chen
Publisher: name: figshare
Year: 2021
Subjects: subject: Physical Sciences not elsewhere classified
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Hematology

description: Additional file 1: Table S1. Histopathological score criteria for heart, liver, spleen, lung, and kidneys.
title: Atlas des DOM. - La Réunion - Planche 5 : Géomorphologie : notice, page 1 "I. Vue d'ensemble" et "II. Les types de formes"
Creators: name: Chaussalet, Jeanine
name: Defos du Rau, Jean
name: Fontaine, Léon
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2017
Subjects: paysage
géomorphologie
relief volcanique
érosion hydrique

description: Présente la méthodologie du travail de documentation et de terrain. Présente une vue d'ensemble des grandes étapes de l'édification de l'île et des grandes lignes du relief. Puis présente les différentes formes de construction et de destruction du paysage et les différentes formes d'accumulation (suite page 2).
description: Relation: http://www.nakala.fr/data/11280/e1f7a269
description: Coverage: La Réunion
description: Coverage: Piton de la Fournaise
description: Coverage: Piton des Neiges
description: Temporal: start=1972; end=1975;
$^{\text{7}}$Li-induced reaction on $^{\text{nat}}$Mo: A study of complete versus incomplete fusion
Creators: name: Kumar, Deepak
name: Maiti, Moumita
name: Lahiri, Susanta
Publisher: name: arXiv
Year: 2017
Subjects: subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: Several investigations on the complete-incomplete fusion (CF-ICF) dynamics of $α$-cluster well-bound nuclei has been contemplated above the Coulomb barrier ($\sim$ 4-7 MeV/nucleon) in recent years. It is therefore expected to observe significant ICF over CF in the reactions induced by a weakly bound $α$-cluster nucleus at slightly above the barrier. In order to investigate CF-ICF in the loosely bound system, $^{\text{7}}$Li beam was bombarded on the $^{\text{nat}}$Mo foils, separated by the aluminium (Al) catcher foils alternatively, within $\sim$ 3-6.5 MeV/nucleon. Evaporation residues produced in each foil were identified by the $γ$-ray spectrometry. Measured cross section data of the residues were compared with the theoretical model calculations based on the equilibrium (EQ) and preequilibrium (PEQ) reaction mechanisms. The experimental cross section of $^{\text{101m,100,99m,97}}$Rh, $^{\text{97,95}}$Ru, $^{\text{99m,96,95,94,93m+g}}$Tc and $^{\text{93m}}$Mo residues measured at various projectile energies were satisfactorily reproduced by the simplified coupled channel approach in comparison to single barrier penetration model calculation. Significant cross section enhancement in the $α$-emitting channels was observed compared to EQ and PEQ model calculations throughout observed energy region. The ICF process over CF was analyzed by comparing with EMPIRE. The increment of the incomplete fusion fraction was observed with increasing projectile energies. Theoretical model calculations reveal that compound reaction mechanism is the major contributor to the production of residues. Theoretical evaluations substantiate the contribution of ICF over the CF in $α$-emitting channels.
description: 25 Pages and 6 figures; Phys Rev C, 2017
Disordered multihyperuniformity derived from binary plasmas
Creators: name: Lomba, Enrique
name: Weis, Jean-Jacques
name: Torquato, Salvatore
Publisher: name: arXiv
Year: 2017
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Disordered multihyperuniform many-particle systems are exotic amorphous states that allow exquisite color sensing capabilities due to their anomalous suppression of density fluctuations for distinct subsets of particles, as recently evidenced in photoreceptor mosaics in avian retina. Motivated by this biological finding, we present the first statistical-mechanical model that rigorously achieves disordered multihyperuniform many-body systems by tuning interactions in binary mixtures of non-additive hard-disk plasmas. We demonstrate that multihyperuniformity competes with phase separation and stabilizes a clustered phase. Our work provides a systematic means to generate disordered multihyperuniform solids, enabling one to explore their potentially novel photonic, phononic, electronic and transport properties.
New divergences of tachyon in the two-dimensional charged black holes
Creators: name: Lee, H. W.
name: Myung, Y. S.
name: Kim, Jin Young
name: Park, D. K.
Publisher: name: arXiv
Year: 1996
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We quantize the tachyon field in the two-dimensional (2D), $ε<2$ charged black holes where $ε$ is the dilaton coupling parameter for the Maxwell term. Especially the expectation value of the stress-energy tensor $\langle T_{ab}\rangle$, observed by a freely falling observer, is computed. This shows that new divergences such as $\ln f$ and ${1 \over f}$ arises near the horizon ($f \to 0$), compared with conformal matter case.
description: 10 pages no figure, RevTeX