cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
HistoSPACE: Histology-Inspired Spatial Transcriptome Prediction And Characterization Engine
Creators: name: Kumar, Shivam
name: Chatterjee, Samrat
Publisher: name: arXiv
Year: 2024
Subjects: subject: Image and Video Processing (eess.IV)
subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Computer and information sciences

description: Spatial transcriptomics (ST) enables the visualization of gene expression within the context of tissue morphology. This emerging discipline has the potential to serve as a foundation for developing tools to design precision medicines. However, due to the higher costs and expertise required for such experiments, its translation into a regular clinical practice might be challenging. Despite the implementation of modern deep learning to enhance information obtained from histological images using AI, efforts have been constrained by limitations in the diversity of information. In this paper, we developed a model, HistoSPACE that explore the diversity of histological images available with ST data to extract molecular insights from tissue image. Our proposed study built an image encoder derived from universal image autoencoder. This image encoder was connected to convolution blocks to built the final model. It was further fine tuned with the help of ST-Data. This model is notably lightweight in compared to traditional histological models. Our developed model demonstrates significant efficiency compared to contemporary algorithms, revealing a correlation of 0.56 in leave-one-out cross-validation. Finally, its robustness was validated through an independent dataset, showing a well matched preditction with predefined disease pathology.
Mixed Integer Linear Programming Solver Using Benders Decomposition Assisted by Neutral Atom Quantum Processor
Creators: name: Naghmouchi, M. Yassine
name: Coelho, Wesley da Silva
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: This paper presents a new hybrid classical-quantum approach to solve Mixed Integer Linear Programming (MILP) using neutral atom quantum computations. We apply Benders decomposition (BD) to segment MILPs into a master problem (MP) and a subproblem (SP), where the MP is addressed using a neutral-atom device, after being transformed into a Quadratic Unconstrained Binary Optimization (QUBO) model, with an automatized procedure. Our MILP to QUBO conversion tightens the upper bounds of the involved continuous variables, positively impacting the required qubit count, and the convergence of the algorithm. To solve the QUBO, we develop a heuristic for atom register embedding and apply a variational algorithm for pulse shaping. In addition, we implement a Proof of Concept (PoC) that outperforms existing solutions. We also conduct preliminary numerical results: in a series of small MILP instances our algorithm identifies over 95 percent of feasible solutions of high quality, outperforming classical BD approaches where the MP is solved using simulated annealing. To the best of our knowledge, this work is the first to utilize a neutral atom quantum processor in developing an automated, problem-agnostic framework for solving MILPs through BD.
description: 16 pages, 6 figures
AUT785172_Supplementary_file_1 – Supplemental material for Neurodivergent intersubjectivity: Distinctive features of how autistic people create shared understanding
Creators: name: Heasman, Brett
name: Gillespie, Alex
Publisher: name: SAGE Journals
Year: 2018
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: FOS: Clinical medicine
subject: 111799 Public Health and Health Services not elsewhere classified
subject: FOS: Health sciences
subject: Education
subject: 130312 Special Education and Disability
subject: FOS: Educational sciences

description: Supplemental material, AUT785172_Supplementary_file_1 for Neurodivergent intersubjectivity: Distinctive features of how autistic people create shared understanding by Brett Heasman and Alex Gillespie in Autism
Mogulones raphani
Creators: name: Colonnelli, Enzo
Publisher: name: Zenodo
Year: 2003
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Curculionidae
Mogulones
Mogulones raphani

description: Mogulones raphani (Fabricius, 1792)
[= M. symphyti (Bedel, 1885)] (Abbazzi et al. 1995).
description: Published as part of Colonnelli, Enzo, 2003, A revised checklist of Italian Curculionoidea (Coleoptera), pp. 1-142 in Zootaxa 337 (1) on page 16, DOI: 10.11646/zootaxa.337.1.1, http://zenodo.org/record/5019737
simon_online_appendix – Supplemental material for Disapproved, but Tolerated: The Role of Respect in Outgroup Tolerance
Creators: name: Simon, Bernd
name: Eschert, Silke
name: Schaefer, Christoph Daniel
name: Reininger, Klaus Michael
name: Zitzmann, Steffen
name: Smith, Heather J.
Publisher: name: SAGE Journals
Year: 2018
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental material, simon_online_appendix for Disapproved, but Tolerated: The Role of Respect in Outgroup Tolerance by Bernd Simon, Silke Eschert, Christoph Daniel Schaefer, Klaus Michael Reininger, Steffen Zitzmann and Heather J. Smith in Personality and Social Psychology Bulletin
Numerical methods and analytic results for one-dimensional strongly interacting spinor gases
Creators: name: Patu, Ovidiu I.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: One of quantum physics' fundamental, but largely unsolved, problems is the computation of the correlation functions in many-body systems. In this paper we address this problem in the case of one-dimensional spinor gases with repulsive contact interactions in the presence of a confining potential. We take advantage of the fact that in the strong coupling limit, the wavefunction factorizes with the charge degrees of freedom expressed as a Slater determinant of spinless fermions and the spin sector described by a spin chain of Sutherland type with exchange coefficients that depend only on the trapping potential. This factorization is also present in the expressions for the correlation functions. Still, analytical and numerical investigations were hindered by the fact that the local exchange coefficients and the charge component of the correlators are expressed as $N-1$ multidimensional integrals, with $N$ the number of particles, which are notoriously hard to compute using conventional methods. We introduce a new approach to calculating these integrals that is extremely simple, scales polynomially with the number of particles, and is several orders of magnitude faster than the previous methods reported in the literature. This allows us to investigate the static and dynamic properties, temperature dependence, and nonequilibrium dynamics for systems with a larger number of particles than previously considered and discover new phenomena. We show that, contrary to natural expectations, the momentum distribution of strongly interacting trapped spinor gases becomes narrower as we increase the temperature and derive simple determinant representations for the correlators in the spin incoherent regime valid for both equilibrium and nonequilibrium situations.
description: 24 pages, 6 figures, RevTeX 4.2
Additional file 3 of Immunological pathogenesis of Bovine E. coli infection in a model of C. elegans
Creators: name: Peng, Hao
name: Bai, Huili
name: Pan, Yan
name: Li, Jun
name: Pei, Zhe
name: Liao, Yuying
name: Wu, Cuilan
name: Li, Changting
name: Tao, Li
name: Zhong, Shuhong
name: Ma, Chunxia
name: Chen, Zhongwei
name: Li, Xiaoning
name: Gong, Yu
name: Wang, Leping
name: Li, Fengsheng
Publisher: name: figshare
Year: 2024
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Additional file 3.
Nanophyes Schonherr 1838
Creators: name: Colonnelli, Enzo
Publisher: name: Zenodo
Year: 2003
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Plagiorchiida
Troglotrematidae
Nanophyes

description: Nanophyes Schönherr, 1838
[= Dieckmanniellus Alonso­Zarazaga, 1989; = Microon Alonso­ Zarazaga, 1989; = Nanomimus Alonso­Zarazaga, 1989] (Egorov 1996, Gønget 1997).
description: Published as part of Colonnelli, Enzo, 2003, A revised checklist of Italian Curculionoidea (Coleoptera), pp. 1-142 in Zootaxa 337 (1) on page 16, DOI: 10.11646/zootaxa.337.1.1, http://zenodo.org/record/5019737
Debiasing astro-Photometric Observations with Corrections Using Statistics (DePhOCUS)
Creators: name: Hoffmann, Tobias
name: Micheli, Marco
name: Cano, Juan Luis
name: Devogèle, Maxime
name: Farnocchia, Davide
name: Pravec, Petr
name: Vereš, Peter
name: Poppe, Björn
Publisher: name: arXiv
Year: 2024
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: Photometric measurements allow the determination of an asteroid's absolute magnitude, which often represents the sole means to infer its size. Photometric observations can be obtained in a variety of filters that can be unique to a specific observatory. Those observations are then calibrated into specific bands with respect to reference star catalogs. In order to combine all the different measurements for evaluation, photometric observations need to be converted to a common band, typically V-band. Current band-correction schemes in use by IAU's Minor Planet Center, JPL's Center for Near Earth Object Studies and ESA's NEO Coordination Centre use average correction values for the apparent magnitude derived from photometry of asteroids as the corrections are dependent on the typically unknown spectrum of the object to be corrected. By statistically analyzing the photometric residuals of asteroids, we develop a new photometric correction scheme that does not only consider the band, but also accounts for reference catalog and observatory. We describe a new statistical photometry correction scheme for asteroid observations with debiased corrections. Testing this scheme on a reference group of asteroids, we see a 36% reduction in the photometric residuals. Moreover, the new scheme leads to a more accurate and debiased determination of the H-G magnitude system and, in turn, to more reliable inferred sizes. We discuss the significant shift in the corrections with this "DePhOCUS" debiasing system, its limitations, and the impact for photometric and physical properties of all asteroids, especially Near-Earth Objects.
データセットの引用と管理(ポストカード)
Creators: name: Vrouwenvelder, Kristina
name: Raia, Natalie
Publisher: name: Zenodo
Year: 2024

description: オープンサイエンスの旅をはじめよう!

データセットの引用と管理

データセットを管理する:

可能な限り汎用的なフォーマットでデータを保存しましょう。また、情報のロスが少ない圧縮ファイル形式(例:TIFF)を使用し、できるだけオープンソースのソフトウェアを使いましょう。

TIP: 新しいことを習慣づけるには時間がかかります。作業プロセスの中に変化を取り入れるよう心がけ、進捗を確認するために時間をとりましょう。

ファイルやフォルダの命名ルールを標準化しておきましょう。

READMEファイルを作成して作業や変更に関するログを残し、常に最新の状態にしておきましょう。データセットのメタデータを作成する際に役立つ基本情報を記録しておきましょう。

データやファイルなどの自動バックアップを設定しましょう。

できるだけオープンにデータを共有する:

データセットをどこにデポジットするかあらかじめ決めておくと、デポジットの際に必要なデータセットの構成やメタデータの準備に役立ちます。データセットを先にアップロードしておいて柔軟にエンバーゴを設定できるリポジトリを使えば、論文や報告書を準備する際に時間を節約できます。

すべてのデータを引用する: 

あなたの論文の「参考文献」欄に、自分が作成したデータやその他のデータすべてについて、データ引用を記載しましょう。そうすることで、適切なクレジットを与え、研究の再現性や透明性を保証できます。

論文には、データの入手先と入手方法を説明するData Availability Statementを記載しましょう。またジャーナルに論文を投稿する前にリンクやファイルを確認し、査読者がデータにアクセスできるようにしておきましょう。 

TIP: ジャーナルが提供しているガイダンスや、右のQRコードからAGUのガイダンスを確認して、データの引用とAvailability Statementが完全であることを確認しましょう。

ソフトウェアのドキュメンテーションと引用のチェックリストでは、データのバックアップ、バージョン管理、電子ラボノートなどに関する情報も提供しています。

このポストカードはPARSECチームによるチェックリストを元に作成されました。
Supplemental material for Living single: A phenomenological study of a group of South African single women
Creators: name: Elmien Lesch
name: Watt, Alberta SJ Van Der
Publisher: name: SAGE Journals
Year: 2018
Subjects: subject: Gender studies
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental Material for Living single: A phenomenological study of a group of South African single women by Elmien Lesch and Alberta SJ van der Watt in Feminism & Psychology
Additional file 6 of Immunological pathogenesis of Bovine E. coli infection in a model of C. elegans
Creators: name: Peng, Hao
name: Bai, Huili
name: Pan, Yan
name: Li, Jun
name: Pei, Zhe
name: Liao, Yuying
name: Wu, Cuilan
name: Li, Changting
name: Tao, Li
name: Zhong, Shuhong
name: Ma, Chunxia
name: Chen, Zhongwei
name: Li, Xiaoning
name: Gong, Yu
name: Wang, Leping
name: Li, Fengsheng
Publisher: name: figshare
Year: 2024
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Additional file 6.
Spin-of-Light Gyroscope and the Spin-Rotation Coupling
Creators: name: Mashhoon, Bahram
name: Obukhov, Yuri N.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Physics (quant-ph)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We discuss the coupling of photon spin with rotation in connection with a recent proposal of Fedderke et al. [arXiv:2406.16178 [physics.optics]] regarding a precision gyroscope based on the intrinsic spin of light. To this end, we analyze the propagation of electromagnetic radiation in a physical system that uniformly rotates about the direction of wave propagation in the presence of an ambient medium. Finally, we consider the possibility of using this type of spin-of-light gyroscope to measure gravitomagnetic fields.
description: 21 pages; v2: presentation improved
Supplemental material for Investigation of a novel gradient degradable ureteral stent in a beagle dog model
Creators: name: Jin, Lu
name: Yao, Lei
name: Zhou, Yan
name: Dai, Guangcheng
name: Zhang, Wenfang
name: Xue, Boxin
Publisher: name: SAGE Journals
Year: 2018
Subjects: Materials Engineering not elsewhere classified

description: Supplemental material for Investigation of a novel gradient degradable ureteral stent in a beagle dog model by Lu Jin, Lei Yao, Yan Zhou, Guangcheng Dai, Wenfang Zhang and Boxin Xue in Journal of Biomaterials Applications
Additional file 2 of Immunological pathogenesis of Bovine E. coli infection in a model of C. elegans
Creators: name: Peng, Hao
name: Bai, Huili
name: Pan, Yan
name: Li, Jun
name: Pei, Zhe
name: Liao, Yuying
name: Wu, Cuilan
name: Li, Changting
name: Tao, Li
name: Zhong, Shuhong
name: Ma, Chunxia
name: Chen, Zhongwei
name: Li, Xiaoning
name: Gong, Yu
name: Wang, Leping
name: Li, Fengsheng
Publisher: name: figshare
Year: 2024
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Additional file 2.
Height-function-based 4D reference metrics for hyperboloidal evolution
Creators: name: Vañó-Viñuales, Alex
name: Valente, Tiago
Publisher: name: arXiv
Year: 2024
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Hyperboloidal slices are spacelike slices that reach future null infinity. Their asymptotic behaviour is different from Cauchy slices, which are traditionally used in numerical relativity simulations. This work uses free evolution of the formally-singular conformally compactified Einstein equations in spherical symmetry. One way to construct gauge conditions suitable for this approach relies on building the gauge source functions from a time-independent background spacetime metric. This background reference metric is set using the height function approach to provide the correct asymptotics of hyperboloidal slices of Minkowski spacetime. The present objective is to study the effect of different choices of height function on hyperboloidal evolutions via the reference metrics used in the gauge conditions. A total of 10 reference metrics for Minkowski are explored, identifying some of their desired features. They include 3 hyperboloidal layer constructions, evolved with the non-linear Einstein equations for the first time. Focus is put on long-term numerical stability of the evolutions, including small initial gauge perturbations. The results will be relevant for future (puncture-type) hyperboloidal evolutions, 3D simulations and the development of coinciding Cauchy and hyperboloidal data, among other applications.
description: 19 pages, 14 figures; matches published version, part of topical collection "Hyperboloidal foliations in the era of gravitational-wave astronomy: from mathematical relativity to astrophysics''
Neocoenorrhinus Voss 1951
Creators: name: Colonnelli, Enzo
Publisher: name: Zenodo
Year: 2003
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Attelabidae
Neocoenorrhinus

description: Neocoenorrhinus Voss, 1951
[= Coenorhinus: Seidlitz, 1891 not Caenorhinus C. G. Thomson, 1859] (Abbazzi et al. 1995). To Neocoenorrhinus is here given generic rank, according to Alonso­Zarazaga & Lyal (1999, 2002), although Legalov & Fremuth (2002) have sunk it to subgenus of Temnocerus Thunberg.
description: Published as part of Colonnelli, Enzo, 2003, A revised checklist of Italian Curculionoidea (Coleoptera), pp. 1-142 in Zootaxa 337 (1) on page 16, DOI: 10.11646/zootaxa.337.1.1, http://zenodo.org/record/5019737
SawaokaOpenPracticesDisclosure – Supplemental material for The Paradox of Viral Outrage
Creators: name: Sawaoka, Takuya
name: Monin, Benoît
Publisher: name: SAGE Journals
Year: 2018
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: Neuroscience

description: Supplemental material, SawaokaOpenPracticesDisclosure for The Paradox of Viral Outrage by Takuya Sawaoka and Benoît Monin in Psychological Science
Characterization of the Clinically Approved MRI Tracer Resotran for Magnetic Particle Imaging in a Comparison Study
Creators: name: Mohn, Fabian
name: Scheffler, Konrad
name: Ackers, Justin
name: Weimer, Agnes
name: Wegner, Franz
name: Thieben, Florian
name: Ahlborg, Mandy
name: Vogel, Patrick
name: Graeser, Matthias
name: Knopp, Tobias
Publisher: name: arXiv
Year: 2024
Subjects: subject: Medical Physics (physics.med-ph)
subject: Applied Physics (physics.app-ph)
subject: FOS: Physical sciences

description: Objective. The availability of magnetic nanoparticles with medical approval for human intervention is fundamental to the clinical translation of magnetic particle imaging (MPI). In this work, we thoroughly evaluate and compare the magnetic properties of an magnetic resonance imaging (MRI) approved tracer to validate its performance for MPI in future human trials. Approach. We analyze whether the recently approved MRI tracer Resotran is suitable for MPI. In addition, we compare Resotran with the previously approved and extensively studied tracer Resovist, with Ferrotran, which is currently in a clinical phase III study, and with the tailored MPI tracer Perimag. Main results. Initial magnetic particle spectroscopy measurements indicate that Resotran exhibits performance characteristics akin to Resovist, but below Perimag. We provide data on four different tracers using dynamic light scattering, transmission electron microscopy, vibrating sample magnetometry measurements, magnetic particle spectroscopy to derive hysteresis, point spread functions, and a serial dilution, as well as system matrix based MPI measurements on a preclinical scanner (Bruker 25/20 FF), including reconstructed images. Significance. Numerous approved magnetic nanoparticles used as tracers in MRI lack the necessary magnetic properties essential for robust signal generation in MPI. The process of obtaining medical approval for dedicated MPI tracers optimized for signal performance is an arduous and costly endeavor, often only justifiable for companies with a well-defined clinical business case. Resotran is an approved tracer that has become available in Europe for MRI. In this work, we study the eligibility of Resotran for MPI in an effort to pave the way for human MPI trials.
Supplemental material for Building a Grounded Theory of Engagement in Mindfulness-Based Group Therapy for Distressing Voices
Creators: name: McHale, Ciaran
name: Hayward, Mark
name: Jones, Fergal W
Publisher: name: SAGE Journals
Year: 2018
Subjects: subject: 111099 Nursing not elsewhere classified
subject: FOS: Health sciences
subject: 111799 Public Health and Health Services not elsewhere classified
subject: 160807 Sociological Methodology and Research Methods
subject: FOS: Sociology

description: Supplemental material, Supplemental_Material for Building a Grounded Theory of Engagement in Mindfulness-Based Group Therapy for Distressing Voices by Ciaran McHale, Mark Hayward and Fergal W Jones in Qualitative Health Research
Exact spectral function and nonequilibrium dynamics of the strongly interacting Hubbard model
Creators: name: Patu, Ovidiu I.
name: Klumper, Andreas
name: Foerster, Angela
Publisher: name: arXiv
Year: 2024
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Quantum Gases (cond-mat.quant-gas)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Analytical results on the correlation functions of strongly correlated many-body systems are rare in the literature and their importance cannot be overstated. We present determinant representations for the space-, time-, and temperature-dependent correlation functions of the strongly interacting one-dimensional Hubbard model in the presence of an external trapping potential. These representations are exact and valid in both equilibrium and nonequilibrium scenarios like the ones initiated by a sudden change of the confinement potential. In addition, they can be implemented numerically very easily significantly outperforming other numerical approaches. As applications of our results we investigate the single particle spectral functions of systems with harmonic trapping and show that dynamical quasicondensation occurs for both fermionic and bosonic spin-$1/2$ systems released from a Mott insulator state.
description: 10 pages, 2 figures, RevTeX 4.2
Algorithm for Reproducible Analysis of Semiconducting 2D Nanomaterials Based on UV/VIS Spectroscopy
Creators: name: Kubetschek, Nico
name: Backes, Claudia
name: Goldie, Stuart
Publisher: name: arXiv
Year: 2024
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Rapid and reliable analysis of liquid dispersions of 2D materials is essential for fully harnessing their potential, allowing size and quality validation before subsequent processing or device fabrication. Existing UV-VIS extinction spectroscopy-based metrics, particularly those related to thickness, have shown promise but rely on manual data processing, which can introduce irreproducibility and user errors. To address this challenge and enable uniform analysis across laboratories, a freely available program is developed for the reproducible analysis of nanosheet dispersions. Specifically, a smoothing routine is applied to the spectral data, takes the second derivative, and use integral areas to find the wavelength of exciton transitions. This program enables rapid measurement of nanosheet concentration, length, and thickness by UV-VIS spectroscopy and thickness metrics are refined for eight common 2D nanomaterials. The program and methodology are freely available for use and allow metrics for new materials to be implemented easily in the future.
description: 17 pages, 6 figures
Decay-protected superconducting qubit with fast control enabled by integrated on-chip filters
Creators: name: Sah, Aashish
name: Kundu, Suman
name: Suominen, Heikki
name: Chen, Qiming
name: Möttönen, Mikko
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Achieving fast gates and long coherence times for superconducting qubits presents challenges, typically requiring either a stronger coupling of the drive line or an excessively strong microwave signal to the qubit. To address this, we introduce on-chip filters of the qubit drive exhibiting a stopband at the qubit frequency, thus enabling long coherence times and strong coupling at the subharmonic frequency, facilitating fast single-qubit gates, and reduced thermal load. The filters exhibit an extrinsic relaxation time of a few seconds while enabling sub-10-ns gates with subharmonic control. Here we show up to 200-fold improvement in the measured relaxation time at the stopband. Furthermore, we implement subharmonic driving of Rabi oscillations with a $π$ pulse duration of 12 ns. Our demonstration of on-chip filters and efficient subharmonic driving in a two-dimensional quantum processor paves the way for a scalable qubit architecture with reduced thermal load and noise from the control line.
description: Main document (15 pages, 5 figures), Supplementary material (10 pages, 7 figures, 1 table)
Derivation of low-energy Hamiltonians for heavy-fermion Materials
Creators: name: Ghioldi, E. A.
name: Wang, Zhentao
name: Chinellato, L. M.
name: Zhu, Jian-Xin
name: Nomura, Yusuke
name: Arita, Ryotaro
name: Simeth, W.
name: Janoschek, M.
name: Ronning, F.
name: Batista, C. D.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: By utilizing a multi-orbital periodic Anderson model with parameters obtained from \textit{ab initio} band structure calculations, combined with degenerate perturbation theory, we derive effective Kondo-Heisenberg and spin Hamiltonians that capture the interaction among the effective magnetic moments. This derivation encompasses fluctuations via both nonmagnetic $4f^0$ and magnetic $4f^2$ virtual states, and its accuracy is confirmed through comparison with experimental data obtained from CeIn$_3$. The significant agreement observed between experimental results and theoretical predictions underscores the potential of deriving minimal models from first-principles calculations for achieving a quantitative description of $4f$ materials. Moreover, our microscopic derivation unveils the underlying origin of anisotropy in the exchange interaction between Kramers doublets, shedding light on the conditions under which this anisotropy may be weak compared to the isotropic contribution.
description: 30 pages, 16 figures
King_Open_Practices_Disclosure – Supplemental material for Negative Urgency Is Correlated With the Use of Reflexive and Disengagement Emotion Regulation Strategies
Creators: name: King, Kevin M.
name: Feil, Madison C.
name: Halvorson, Max A.
Publisher: name: SAGE Journals
Year: 2018
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental material, King_Open_Practices_Disclosure for Negative Urgency Is Correlated With the Use of Reflexive and Disengagement Emotion Regulation Strategies by Kevin M. King, Madison C. Feil and Max Halvorson in Clinical Psychological Science
Application of Convolutional Neural Networks to time domain astrophysics. 2D image analysis of OGLE light curves
Creators: name: Monsalves, N.
name: Arancibia, M. Jaque
name: Bayo, A.
name: Sánchez-Sáez, P.
name: Angeloni, R.
name: Damke, G
name: Van de Perre, J. Segura
Publisher: name: arXiv
Year: 2024
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: In recent years the amount of publicly available astronomical data has increased exponentially, with a remarkable example being large scale multiepoch photometric surveys. This wealth of data poses challenges to the classical methodologies commonly employed in the study of variable objects. As a response, deep learning techniques are increasingly being explored to effectively classify, analyze, and interpret these large datasets. In this paper we use two-dimensional histograms to represent Optical Gravitational Lensing Experiment (OGLE) phasefolded light curves as images. We use a Convolutional Neural Network (CNN) to classify variable objects within eight different categories (from now on labels): Classical Cepheid (CEP), RR Lyrae (RR), Long Period Variable (LPV), Miras (M), Ellipsoidal Binary (ELL), Delta Scuti (DST), Eclipsing Binary (E), and spurious class with Incorrect Periods (Rndm). We set up different training sets to train the same CNN architecture in order to characterize the impact of the training. The training sets were built from the same source of labels but different filters and balancing techniques were applied. Namely: Undersampling (U), Data Augmentation (DA), and Batch Balancing (BB). The best performance was achieved with the BB approach and a training sample size of $\sim$370000 stars. Regarding computational performance, the image representation production rate is of $\sim$76 images per core per second, and the time to predict is $\sim$ 60$\, μ\text{s}$ per star. The accuracy of the classification improves from $\sim$ 92%, when based only on the CNN, to $\sim$ 98% when the results of the CNN are combined with the period and amplitude features in a two step approach. This methodology achieves comparable results with previous studies but with two main advantages: the identification of miscalculated periods and the improvement in computational time cost.
description: accepted for publication in A&A
SupplementaryMaterial_CLN – Supplemental material for A Novel Approach for Identifying Relevant Genes for Breast Cancer Survivability on Specific Therapies
Creators: name: Tabl, Ashraf Abou
name: Abedalrhman Alkhateeb
name: Pham, Huy Quang
name: Rueda, Luis
name: Waguih ElMaraghy
name: Alioune Ngom
Publisher: name: SAGE Journals
Year: 2018
Subjects: Cell Biology

description: Supplemental material, SupplementaryMaterial_CLN for A Novel Approach for Identifying Relevant Genes for Breast Cancer Survivability on Specific Therapies by Ashraf Abou Tabl, Abedalrhman Alkhateeb, Huy Quang Pham, Luis Rueda, Waguih ElMaraghy and Alioune Ngom in Evolutionary Bioinformatics
Additional file 1 of Immunological pathogenesis of Bovine E. coli infection in a model of C. elegans
Creators: name: Peng, Hao
name: Bai, Huili
name: Pan, Yan
name: Li, Jun
name: Pei, Zhe
name: Liao, Yuying
name: Wu, Cuilan
name: Li, Changting
name: Tao, Li
name: Zhong, Shuhong
name: Ma, Chunxia
name: Chen, Zhongwei
name: Li, Xiaoning
name: Gong, Yu
name: Wang, Leping
name: Li, Fengsheng
Publisher: name: figshare
Year: 2024
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Additional file 1.
Role of long jumps in Lévy noise induced multimodality
Creators: name: Pogorzelec, Przemysław
name: Dybiec, Bartłomiej
Publisher: name: arXiv
Year: 2024
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Lévy noise is a paradigmatic noise used to describe out-of-equilibrium systems. Typically, properties of Lévy noise driven systems are very different from their Gaussian white noise driven counterparts. In particular, under action of Lévy noise, stationary states in single-well, super-harmonic, potentials are no longer unimodal. Typically, they are bimodal however for fine-tuned potentials the number of modes can be further increased. The multimodality arises as a consequence of the competition between long displacements induced by the non-equilibrium stochastic driving and action of the deterministic force. Here, we explore robustness of bimodality in the quartic potential under action of the Lévy noise. We explore various scenarios of bounding long jumps and assess their ability to weaken and destroy multimodality. In general, we demonstrate that despite its robustness it is possible to destroy the bimodality, however it requires drastic reduction in the length of noise-induced jumps.
description: 11 pages, 10 figures
Complete NLO corrections to top-quark pair production with isolated photons
Creators: name: Stremmer, Daniel
name: Worek, Malgorzata
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: We compute for the first time the so-called complete NLO corrections to top-quark pair production with one and two isolated photons in the di-lepton top-quark decay channel. The Narrow Width Approximation is used for the modeling of unstable top quarks and $W$ bosons. Higher-order QCD and EW effects as well as photon bremsstrahlung are consistently included at all stages: in production and top-quark decays. We present results at the integrated and differential fiducial cross-section level for both processes for the LHC Run II center-of-mass energy of $\sqrt{s}=13$ TeV. In addition, we investigate the scale choice in photonic observables. Finally, the individual size of each subleading contribution is discussed in detail and the origin of the main subleading corrections is scrutinised. For the latter case, alternative calculations are performed in which the subleading NLO corrections are included only in the production of $t\bar{t}γ$ and $t\bar{t}γγ$.
description: 34 pages, 13 Figures, 2 Tables, version to appear in JHEP
Neocoenorrhinus italicus
Creators: name: Colonnelli, Enzo
Publisher: name: Zenodo
Year: 2003
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Attelabidae
Neocoenorrhinus
Neocoenorrhinus italicus

description: Neocoenorrhinus italicus (Voss, 1929)
is a good species, not a subspecies of N. cribrum (Desbrochers, 1895) (Legalov & Fremuth 2002).
description: Published as part of Colonnelli, Enzo, 2003, A revised checklist of Italian Curculionoidea (Coleoptera), pp. 1-142 in Zootaxa 337 (1) on page 16, DOI: 10.11646/zootaxa.337.1.1, http://zenodo.org/record/5019737
Magnetization oscillations in a periodically driven transverse field Ising chain
Creators: name: Wang, Xiao
name: Oshikawa, Masaki
name: Kormos, Márton
name: Wu, Jianda
Publisher: name: arXiv
Year: 2024
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Atomic Physics (physics.atom-ph)
subject: FOS: Physical sciences

description: We investigate the nonequilibrium dynamics of the magnetization in an Ising chain subjected to a slowly rotating transverse field. The magnetization oscillations are found to be explained by the contributions from different particle excitations in the quantum $E_8$ model. We study the magnetization in the frequency domain in detail, uncovering a series of singular peaks for the $z$ (Ising) component. These singular peaks are split into two sets for the magnetization along $x$ and $y$ directions with frequency shifts set by the rotational-field frequency. The peaks include both $δ$-function type and edge-singularity type peaks. The $δ$-function peaks can be attributed to particle excitations involving an $E_8$ particle with either the vacuum or a different particle. The edge-singularity peaks are contributed by particle excitations of two $E_8$ particles with either the vacuum or another particle, or by particle excitations that contain two sets of two particles with each set including at least a particle of the same type. We propose a Rydberg qubit array for possible experimental investigation.
description: 12 pages, 2 figures
Numerical solution of FDE-IVPs by using Fractional HBVMs: the fhbvm code
Creators: name: Brugnano, Luigi
name: Gurioli, Gianmarco
name: Iavernaro, Felice
Publisher: name: arXiv
Year: 2024
Subjects: subject: Numerical Analysis (math.NA)
subject: FOS: Mathematics
subject: 34A08, 65R20, 65-04

description: In this paper we describe the efficient numerical implementation of Fractional HBVMs, a class of methods recently introduced for solving systems of fractional differential equations. The reported arguments are implemented in the Matlab code fhbvm, which is made available on the web. An extensive experimentation of the code is reported, to give evidence of its effectiveness.
description: 26 pages, 6 figures
Investigating pre-service science teachers’ metaknowledge about the modelling process and its relation to metaknowledge about models
Creators: name: Engelschalt, Paul
name: Bielik, Tom
name: Krell, Moritz
name: Krüger, Dirk
name: Upmeier Zu Belzen, Annette
Publisher: name: Humboldt-Universität zu Berlin
Year: 2023
Subjects: subject: Metaknowledge
subject: modelling process
subject: modelling competence
subject: 370 Bildung und Erziehung

description: The development of metaknowledge about models (MKM) and metaknowledge about the modelling process (MKP) are important in pre-service science teachers (PSTs) education. MKM refers to knowledge about the model’s entities and its purposes, while MKP refers to knowledge about the components and structure of the modelling process. Assessing MKM and MKP is crucial to foster this knowledge in PSTs’ education. However, assessment instruments focus on MKM rather than MKP, and the connection between MKM and MKP had not been examined deeply. This study validates and applies a diagram task for assessing PSTs’ MKP. For validation, ten experts were surveyed and think-aloud interviews were conducted with ten PSTs. The findings support valid interpretations of PSTs’ MKP based on the diagram task. In the main study, the diagram task was administrated to 63 PSTs, along with an MKM questionnaire. PSTs’ MKP ranged from simple conceptions of modelling as a linear process including few components to sophisticated conceptions of modelling as an iterative process including multiple components. Furthermore, it was found that knowledge about using models to predict a phenomenon is an aspect connecting sophisticated MKM and MKP, indicating that this aspect is crucial to foster both, PSTs MKM and MKP.
Additional file 3 of Mannosylated-serum albumin nanoparticle imaging to monitor tumor-associated macrophages under anti-PD1 treatment
Creators: name: Gu, Gyo Jeong
name: Chung, Hyewon
name: Park, Ji Yong
name: Yoo, Ranji
name: Im, Hyung-Jun
name: Choi, Hongyoon
name: Lee, Yun-Sang
name: Seok, Seung Hyeok
Publisher: name: figshare
Year: 2024
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 3: Table S1. Primer sequences.
Additional file 7 of Immunological pathogenesis of Bovine E. coli infection in a model of C. elegans
Creators: name: Peng, Hao
name: Bai, Huili
name: Pan, Yan
name: Li, Jun
name: Pei, Zhe
name: Liao, Yuying
name: Wu, Cuilan
name: Li, Changting
name: Tao, Li
name: Zhong, Shuhong
name: Ma, Chunxia
name: Chen, Zhongwei
name: Li, Xiaoning
name: Gong, Yu
name: Wang, Leping
name: Li, Fengsheng
Publisher: name: figshare
Year: 2024
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Additional file 7.
Neoglanis oxalis
Creators: name: Colonnelli, Enzo
Publisher: name: Zenodo
Year: 2003
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Curculionidae
Neoglanis
Neoglanis oxalis

description: Neoglanis oxalis (Herbst, 1795)
[= N. oxalidis: (Pfeil, 1866)] (Burakowski, Mroczowski & Stefañska 1995).
description: Published as part of Colonnelli, Enzo, 2003, A revised checklist of Italian Curculionoidea (Coleoptera), pp. 1-142 in Zootaxa 337 (1) on page 16, DOI: 10.11646/zootaxa.337.1.1, http://zenodo.org/record/5019737
Additional file 1 of Early marriage and marital satisfaction among young married men in rural Uttar Pradesh, India
Creators: name: Chauhan, Shekhar
name: Sekher, T. V.
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 1: Table S1. Correlation between items in ENRICH marital satisfaction scale (Inter-item reliability).
Neoxyonyx strigatirostris
Creators: name: Colonnelli, Enzo
Publisher: name: Zenodo
Year: 2003
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Curculionidae
Neoxyonyx
Neoxyonyx strigatirostris

description: Neoxyonyx strigatirostris (Hochhut, 1847)
[= N. massageta (Kirsch, 1878)] (Abbazzi et al. 1995).
description: Published as part of Colonnelli, Enzo, 2003, A revised checklist of Italian Curculionoidea (Coleoptera), pp. 1-142 in Zootaxa 337 (1) on page 16, DOI: 10.11646/zootaxa.337.1.1, http://zenodo.org/record/5019737
Additional file 2 of Early marriage and marital satisfaction among young married men in rural Uttar Pradesh, India
Creators: name: Chauhan, Shekhar
name: Sekher, T. V.
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 2: Table S2. Items in ENRICH Marital Satisfaction Scale.
Omiamima Silfverberg 1977
Creators: name: Colonnelli, Enzo
Publisher: name: Zenodo
Year: 2003
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Curculionidae
Omiamima

description: Omiamima Silfverberg, 1977
[= Omias: Schönherr, 1826 not Germar, 1817] (Abbazzi et al. 1995).
description: Published as part of Colonnelli, Enzo, 2003, A revised checklist of Italian Curculionoidea (Coleoptera), pp. 1-142 in Zootaxa 337 (1) on page 16, DOI: 10.11646/zootaxa.337.1.1, http://zenodo.org/record/5019737
Supplementary_Table_1 - Safety of a 2-Day Antibiotic Regimen After Delayed Chest Closure Post Pediatric Cardiac Surgery
Creators: name: Philip, Joseph
name: Kegg, Christian
name: Lopez-Colon, Dalia
name: Kelly, Brian J.
name: Lawrence, Robert M.
name: Robinson, Matthew A.
name: Samraj, Ravi S.
name: Bleiweis, Mark S.
Publisher: name: SAGE Journals
Year: 2018
Subjects: subject: 110305 Emergency Medicine
subject: FOS: Clinical medicine
subject: 111702 Aged Health Care
subject: FOS: Health sciences
subject: 110203 Respiratory Diseases

description: Supplementary_Table_1 for Safety of a 2-Day Antibiotic Regimen After Delayed Chest Closure Post Pediatric Cardiac Surgery by Joseph Philip, Christian Kegg, Dalia Lopez-Colon, Brian J. Kelly, Robert M. Lawrence, Matthew A. Robinson, Ravi S. Samraj, and Mark S. Bleiweis in Journal of Intensive Care Medicine
Omias Germar 1817
Creators: name: Colonnelli, Enzo
Publisher: name: Zenodo
Year: 2003
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Curculionidae
Omias

description: Omias Germar, 1817
[= Mylacus Boheman, 1843] (Abbazzi et al. 1995).
description: Published as part of Colonnelli, Enzo, 2003, A revised checklist of Italian Curculionoidea (Coleoptera), pp. 1-142 in Zootaxa 337 (1) on page 16, DOI: 10.11646/zootaxa.337.1.1, http://zenodo.org/record/5019737
Supplementary_Information_revised_13-06-2018 – Supplemental material for Association of DFNA5, SYK, and NELL1 variants along with HPV infection in oral cancer among the prolonged tobacco-chewers
Creators: name: Sharbadeb Kundu
name: Vijayalakshmi Ramshankar
name: Akalesh Kumar Verma
name: Soundara Viveka Thangaraj
name: Krishnamurthy, Arvind
name: Kumar, Rajeev
name: Kannan, Ravi
name: Ghosh, Sankar Kumar
Publisher: name: SAGE Journals
Year: 2018
Subjects: subject: 111299 Oncology and Carcinogenesis not elsewhere classified
subject: FOS: Clinical medicine
subject: Cell Biology

description: Supplemental material, Supplementary_Information_revised_13-06-2018 for Association of DFNA5, SYK, and NELL1 variants along with HPV infection in oral cancer among the prolonged tobacco-chewers by Sharbadeb Kundu, Vijayalakshmi Ramshankar, Akalesh Kumar Verma, Soundara Viveka Thangaraj, Arvind Krishnamurthy, Rajeev Kumar, Ravi Kannan and Sankar Kumar Ghosh in Tumor Biology
'Barzh loch an Taer (Dans la cabane de Taëran)
Creators: name: Musée National Des Arts Et Traditions Populaires (Paris)
name: Centre D'ethnologie Française
Publisher: name: École des Hautes Études en Sciences Sociales; Institut  interdisciplinaire d'anthropologie du contemporain (Paris); Laboratoire d'anthropologie et d'histoire de l'institution de la culture (Paris)
Year: 2024

Abstract
Beyond Preferences in AI Alignment
Creators: name: Zhi-Xuan, Tan
name: Carroll, Micah
name: Franklin, Matija
name: Ashton, Hal
Publisher: name: arXiv
Year: 2024
Subjects: subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: The dominant practice of AI alignment assumes (1) that preferences are an adequate representation of human values, (2) that human rationality can be understood in terms of maximizing the satisfaction of preferences, and (3) that AI systems should be aligned with the preferences of one or more humans to ensure that they behave safely and in accordance with our values. Whether implicitly followed or explicitly endorsed, these commitments constitute what we term a preferentist approach to AI alignment. In this paper, we characterize and challenge the preferentist approach, describing conceptual and technical alternatives that are ripe for further research. We first survey the limits of rational choice theory as a descriptive model, explaining how preferences fail to capture the thick semantic content of human values, and how utility representations neglect the possible incommensurability of those values. We then critique the normativity of expected utility theory (EUT) for humans and AI, drawing upon arguments showing how rational agents need not comply with EUT, while highlighting how EUT is silent on which preferences are normatively acceptable. Finally, we argue that these limitations motivate a reframing of the targets of AI alignment: Instead of alignment with the preferences of a human user, developer, or humanity-writ-large, AI systems should be aligned with normative standards appropriate to their social roles, such as the role of a general-purpose assistant. Furthermore, these standards should be negotiated and agreed upon by all relevant stakeholders. On this alternative conception of alignment, a multiplicity of AI systems will be able to serve diverse ends, aligned with normative standards that promote mutual benefit and limit harm despite our plural and divergent values.
description: 26 pages (excl. references), 5 figures
Additional file 3 of Early marriage and marital satisfaction among young married men in rural Uttar Pradesh, India
Creators: name: Chauhan, Shekhar
name: Sekher, T. V.
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 3. Interview schedule for married men.