cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Perissomerus ruficollis Martins 1961
Creators: name: Ferreira, Gabriel Dos Santos
name: Ferreira, André Da Silva
name: Bravo, Freddy
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Perissomerus
Perissomerus ruficollis

description: Perissomerus ruficollis Martins, 1961
Distribution. BRAZIL (Piauí, Paraíba, and Bahia).
description: Published as part of Ferreira, Gabriel Dos Santos, Ferreira, André Da Silva & Bravo, Freddy, 2023, Annotated checklist of Cerambycidae (Coleoptera: Chrysomeloidea) from the Brazilian semi-arid region, with new species and new geographic records, pp. 1-81 in Zootaxa 5235 (1) on page 53, DOI: 10.11646/zootaxa.5235.1.1, http://zenodo.org/record/7610305
Determination of antibiotic residues in pork meat from Northeast Mexico by UPLC-MS
Creators: name: Paz-González, Alma D.
name: Martínez-Vázquez, Ana V.
name: Ortiz-Perez, Eyrá
name: Ramírez-Martínez, Carlos
name: Lara-Ramírez, Edgar E.
name: Juárez-Rendón, Karina
name: Bocanegra-García, Virgilio
name: Vázquez, Karina
name: Rivera, Gildardo
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: In this study, the aim was to identify and quantify antibiotic residues in pork meat samples of supermarkets and butcher shops of two main cities in northeast Mexico, using Ultra-Performance Liquid Chromatography-Mass Spectrometry (UPLC-MS). The results shown seven antibiotic residues detected in the samples. Ampicillin was the main antibiotic with a higher positive rate (>59%) in supermarkets and butcher shops. Tetracycline and sulfamethazine had a high positive rate (>25%). Finally, the quantification of antibiotics shown a high positive rate of samples that exceed the minimum residues limits (MRL). The high positive rate of antibiotic residues in this study suggests an inadequate management in the food industry and represents a potential risk for the human health in the northeast from Mexico.
Additional file 2: Figure S2. of Amplification and propagation of interleukin-1β signaling by murine brain endothelial and glial cells
Creators: name: Krasnow, Stephanie
name: J. Knoll
name: Santhosh Verghese
name: Levasseur, Peter
name: Marks, Daniel
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: SIM-A9 cell transcriptional response to IL-1β. Inflammatory gene expression in SIM-A9 cells that were treated with PBS or IL-1β (50 ng/mL) for 1, 2, 4, 8, or 24 h. Gene expression in the IL-1β-treated cells is expressed as a percentage of the mean value for the PBS-treated cells at the same time point. n = 3 per group. Data are expressed as mean ± SEM. *p
Psiloibidion leucogramma
Creators: name: Ferreira, Gabriel Dos Santos
name: Ferreira, André Da Silva
name: Bravo, Freddy
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Psiloibidion
Psiloibidion leucogramma

description: Psiloibidion leucogramma (Perty, 1832)
Distribution. COLOMBIA, VENEZUELA, BRAZIL (Pará, Maranh„o, Piauí, Bahia, Mato Grosso, Goiás, Minas Gerais, Espírito Santo, Mato Grosso do Sul, and S„o Paulo), BOLIVIA (Beni and Santa Cruz), PARAGUAY, and ARGENTINA (Salta and Formosa).
description: Published as part of Ferreira, Gabriel Dos Santos, Ferreira, André Da Silva & Bravo, Freddy, 2023, Annotated checklist of Cerambycidae (Coleoptera: Chrysomeloidea) from the Brazilian semi-arid region, with new species and new geographic records, pp. 1-81 in Zootaxa 5235 (1) on page 53, DOI: 10.11646/zootaxa.5235.1.1, http://zenodo.org/record/7610305
Pygmodeon andreae
Creators: name: Ferreira, Gabriel Dos Santos
name: Ferreira, André Da Silva
name: Bravo, Freddy
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Pygmodeon
Pygmodeon andreae

description: Pygmodeon andreae (Germar, 1823)
Distribution. BRAZIL (Alagoas, Sergipe, Bahia, Minas Gerais, Espírito Santo, Rio de Janeiro, S„o Paulo, Paraná, Santa Catarina, and Rio Grande do Sul).
description: Published as part of Ferreira, Gabriel Dos Santos, Ferreira, André Da Silva & Bravo, Freddy, 2023, Annotated checklist of Cerambycidae (Coleoptera: Chrysomeloidea) from the Brazilian semi-arid region, with new species and new geographic records, pp. 1-81 in Zootaxa 5235 (1) on page 54, DOI: 10.11646/zootaxa.5235.1.1, http://zenodo.org/record/7610305
Bacterial diversity and lysozyme activity of raw buffalo milk: a case study on milk collection tanks from selected farms
Creators: name: İpek, Semih Latif
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Science Policy

description: Approximately 15% of the milk produced in the world comes from buffaloes. In this study, the microbiome and lysozyme activities of buffalo milk in the Tepecik region were investigated. Samples were taken from ten different farms and analyzed. The average lysozyme activities were 59.858 units × 10−3/mL. Taxonomic analyses showed that Lactococcus, Acinetobacter, Moraxella, Streptococcus, Anoxybacillus, Aeromonas generally constituted the dominant bacterial groups. Low lysozyme activities and Staphylococcus aureus and Micrococcus luteus values showed that the milk taken from ten farms was mastitis free. The presence of Acinetobacter, Moraxella, Anoxybacillus and Aeromonas bacteria, which pose a pathogenic risk for milk, indicates that proper sanitation of milking machines are required. Pseudomonas, a psychrophilic bacterium, was not detected in most products, but was detected in very small amounts in some products. This work sheds a light on future studies that covers lysozyme activity measurement combined with DNA sequencing for food safety in dairy industry.
Pygmodeon obscurum Martins, Galileo & Santos-Silva 2015
Creators: name: Ferreira, Gabriel Dos Santos
name: Ferreira, André Da Silva
name: Bravo, Freddy
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Pygmodeon
Pygmodeon obscurum

description: Pygmodeon obscurum Martins, Galileo & Santos-Silva, 2015
Distribution. BRAZIL (Bahia).
description: Published as part of Ferreira, Gabriel Dos Santos, Ferreira, André Da Silva & Bravo, Freddy, 2023, Annotated checklist of Cerambycidae (Coleoptera: Chrysomeloidea) from the Brazilian semi-arid region, with new species and new geographic records, pp. 1-81 in Zootaxa 5235 (1) on page 54, DOI: 10.11646/zootaxa.5235.1.1, http://zenodo.org/record/7610305
Addressing the spin-valley flavors in moir'e mini-bands of MoS2
Creators: name: Sharma, Chithra H.
name: Prada, Marta
name: Schmidt, Jan-Hendrik
name: D'iaz-Palacio, Isabel Gonz'alez
name: Stauber, Tobias
name: Taniguchi, Takashi
name: Watanabe, Kenji
name: Tiemann, Lars
name: Blick, Robert H.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The physics of moir'e superlattices and the resulting formation of mini-bands in van der Waals materials have opened up an exciting new field in condensed matter physics. These systems exhibit a rich phase diagram of novel physical phenomena and exotic correlated phases that emerge in the low-dispersing bands. Transition metal dichalcogenides, in particular, molybdenum disulfide (MoS2), are potential candidates to extend the studies on moir'e electronics beyond graphene. Our transport spectroscopy measurements and analysis reveal a correlation-driven phase transition and the emergence of discrete mini-bands in MoS2 moir'e superlattices that remained elusive so far. We resolve these mini-bands arising from quantum mechanical tunneling through Schottky barriers between the MoS2 and its metallic leads. Energy scales deduced from a first approach exhibit an astounding agreement with our experimental observations. The behavior under thermal activation suggests a Lifshitz phase transition at low temperatures that is driven by a complete spin-valley symmetry breaking. These intriguing observations bring out the potential of twisted MoS2 to explore correlated electron states and associated physics.
Additional file 2: Figure S2. of Inhibition of HDAC6 activity through interaction with RanBPM and its associated CTLH complex
Creators: name: Salemi, Louisa
name: Maitland, Matthew
name: Yefet, Eyal
name: Schild-Poulter, Caroline
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Virology

description: RanBPM does not directly interact with HDAC6 CAT 2. GST pull-down assays were performed using GST and GST-WT-RanBPM proteins purified on glutathione-agarose beads incubated with extracts from E coli-expressing HDAC6 CAT2. Pull-downs were analyzed by Western blot with antibodies to GST (top panel) and T7 (bottom panel) (PDF 61 kb)
Smaragdion viride Martins 1968
Creators: name: Ferreira, Gabriel Dos Santos
name: Ferreira, André Da Silva
name: Bravo, Freddy
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Smaragdion
Smaragdion viride

description: Smaragdion viride Martins, 1968
Distribution. BRAZIL (Pará, Piauí, Mato Grosso, and Rondônia) and PERU.
description: Published as part of Ferreira, Gabriel Dos Santos, Ferreira, André Da Silva & Bravo, Freddy, 2023, Annotated checklist of Cerambycidae (Coleoptera: Chrysomeloidea) from the Brazilian semi-arid region, with new species and new geographic records, pp. 1-81 in Zootaxa 5235 (1) on page 54, DOI: 10.11646/zootaxa.5235.1.1, http://zenodo.org/record/7610305
Tetraopidion mucoriferum
Creators: name: Ferreira, Gabriel Dos Santos
name: Ferreira, André Da Silva
name: Bravo, Freddy
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Tetraopidion
Tetraopidion mucoriferum

description: Tetraopidion mucoriferum (Thomson, 1867)
Distribution. BRAZIL (Paraíba, Pernambuco, Bahia, Goiás, Minas Gerais, Espírito Santo, Rio de Janeiro, S„o Paulo, Paraná, Santa Catarina, and Rio Grande do Sul), BOLIVIA (Santa Cruz), PARAGUAY, and ARGENTINA (Misiones and Corrientes).
description: Published as part of Ferreira, Gabriel Dos Santos, Ferreira, André Da Silva & Bravo, Freddy, 2023, Annotated checklist of Cerambycidae (Coleoptera: Chrysomeloidea) from the Brazilian semi-arid region, with new species and new geographic records, pp. 1-81 in Zootaxa 5235 (1) on page 54, DOI: 10.11646/zootaxa.5235.1.1, http://zenodo.org/record/7610305
The viability of microorganism of probiotic yogurt enriched with bee pollen
Creators: name: Çiftçi, Mehtap
name: Öncül, Nilgün
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Space Science
subject: Cell Biology
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences

description: It aims to offer an alternative product to the food industry for the increasing demands of healthy nutrition with production of yogurt containing bee pollen. Probiotic yogurt prepared with different levels of bee pollen (0.5%, 1.5%, 3% and 6%) were evaluated for antimicrobial properties, viability of S. thermophilus, L. bulgaricus, L. acidophilus, and Bifidobacterium spp. during 14 days of refrigerated storage, and resistance to in vitro gastrointestinal conditions. Yogurt samples showed antimicrobial activity against L. monocytogenes, S. Typhimurium, E. coli, E. coli O157:H7, and S. aureus at high level of cell concentration (108 CFU/mL). The viability of S. thermophilus, L. bulgaricus, L. acidophilus, and Bifidobacterium spp. decreased in vitro gastrointestinal digestion model depending on bee pollen content and bacterial species as the application time increased. The simulated gastric and intestinal juice tolerance of bacteria was strain dependent and pH-dependent. The addition bee pollen enhanced the survival of L. acidophilus in both simulated juices.
5-n-Alk(en)ylresorcinol accumulation across developmental stages of triticale through comparative metabolite profiling: implications of fresh and dry basis
Creators: name: Marentes-Culma, Ronald
name: Coy-Barrera, Ericsson
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Triticale (× Triticosecale Wittmack), an edible hybrid of rye and wheat, is known for its superior agronomic traits. This study investigates the patterns of 5-n-alk(en)ylresorcinols (AR), phenolic lipids with diverse biological activities, in fresh and dried triticale across developmental stages. Total AR (TAR) content and LC-MS and GC-MS analyses were performed for profiling extracts obtained by solvent-assisted and supercritical fluid extraction methods. All triticale plant parts accumulated ARs, revealing significant distinctions in content and profiles between fresh and dry basis. CO2-extracted dry spikes at late stages and solvent-extracted fresh and dry leaves at the earliest stage exhibited the highest TAR content. Moreover, triticale kernels showcased a broader AR homolog diversity. Semi-quantitative AR levels varied based on plant parts and ontogeny, suggesting constitutive roles during growth. These insights into temporal and spatial distribution offer valuable information for determining optimal harvesting times, quality, and material condition for future breeding studies in triticale.
Investigation antibacterial application and mechanism of the cyclodextrin-metal-organic framework loaded with gold nanoparticle
Creators: name: Guo, Meimei
name: Sogore, Tahirou
name: Ding, Tian
name: Shen, Mofei
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biophysics
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Astronomical and Space Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences

description: The severe threat of microbial contamination to human life and health safety necessitates urgent research and development of antimicrobial materials capable of inhibiting or eradicating pathogens. Cyclodextrin metal-organic framework (CD-MOF) was utilized as a carrier to encapsulate gold nanoparticles (AuNPs), resulting in a composite material (Au@CD-MOF) that exhibited remarkable antibacterial properties. The antibacterial study revealed that Au@CD-MOF completely eradicated Staphylococcus aureus (S. aureus) and Listeria monocytogenes (L. monocytogenes) at a concentration of approximately 1 × 105 CFU/mL after 48 h and 36 h, respectively. Moreover, Au@CD-MOF also demonstrated the complete elimination of Escherichia coli O157:H7 (E. coli O157:H7), Pseudomonas aeruginosa PAO1 (P. aeruginosa PAO1), and Salmonella typhimurium (S. typhimurium) at a concentration of approximately 1 × 105 CFU/mL after 48 h. Moreover, the antibacterial mechanism of Au@CD-MOF was investigated using E. coli O157:H7 and S. aureus as model organisms. The findings revealed that Au@CD-MOF disrupted the integrity of cell membranes and diminished their potential, consequently impeding the normal functions of the bacteria. Additionally, the heightened permeability of cell membranes induced by Au@CD-MOF resulted in substantial leakage of nucleic acids and proteins, ultimately leading to bacterial eradication. Cyclodextrin metal-organic framework loaded with AuNPs has an excellent antibacterial ability. Antibacterial mechanism of cyclodextrin metal-organic framework loaded with AuNPs was investigated.
The Simons Observatory: Beam characterization for the Small Aperture Telescopes
Creators: name: Dachlythra, Nadia
name: Duivenvoorden, Adriaan J.
name: Gudmundsson, Jon E.
name: Hasselfield, Matthew
name: Coppi, Gabriele
name: Adler, Alexandre E.
name: Alonso, David
name: Azzoni, Susanna
name: Chesmore, Grace E.
name: Fabbian, Giulio
name: Ganga, Ken
name: Gerras, Remington G.
name: Jaffe, Andrew H.
name: Johnson, Bradley R.
name: Keating, Brian
name: Keskitalo, Reijo
name: Kisner, Theodore S.
name: Krachmalnicoff, Nicoletta
name: Lungu, Marius
name: Matsuda, Frederick
name: Naess, Sigurd
name: Page, Lyman
name: Puddu, Roberto
name: Puglisi, Giuseppe
name: Simon, Sara M.
name: Teply, Grant
name: Tsan, Tran
name: Wollack, Edward J.
name: Wolz, Kevin
name: Xu, Zhilei
Publisher: name: arXiv
Year: 2023
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: We use time-domain simulations of Jupiter observations to test and develop a beam reconstruction pipeline for the Simons Observatory Small Aperture Telescopes. The method relies on a map maker that estimates and subtracts correlated atmospheric noise and a beam fitting code designed to compensate for the bias caused by the map maker. We test our reconstruction performance for four different frequency bands against various algorithmic parameters, atmospheric conditions and input beams. We additionally show the reconstruction quality as function of the number of available observations and investigate how different calibration strategies affect the beam uncertainty. For all of the cases considered, we find good agreement between the fitted results and the input beam model within a ~1.5% error for a multipole range l = 30 - 700 and an ~0.5% error for a multipole range l = 50 - 200. We conclude by using a harmonic-domain component separation algorithm to verify that the beam reconstruction errors and biases observed in our analysis do not significantly bias the Simons Observatory r-measurement.
description: 23 pages, 21 figures, published in ApJ
Thoracibidion flavopictum
Creators: name: Ferreira, Gabriel Dos Santos
name: Ferreira, André Da Silva
name: Bravo, Freddy
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Thoracibidion
Thoracibidion flavopictum

description: Thoracibidion flavopictum (Perty, 1832)
Distribution. BRAZIL (Maranh„o, Piauí, Rio Grande do Norte, Pernambuco, Bahia, Mato Grosso, Goiás, Minas Gerais, Espírito Santo, Mato Grosso do Sul, Rio de Janeiro, S„o Paulo, Paraná, and Santa Catarina), BOLIVIA (Santa Cruz, Tarija), PARAGUAY, and ARGENTINA (Salta).
description: Published as part of Ferreira, Gabriel Dos Santos, Ferreira, André Da Silva & Bravo, Freddy, 2023, Annotated checklist of Cerambycidae (Coleoptera: Chrysomeloidea) from the Brazilian semi-arid region, with new species and new geographic records, pp. 1-81 in Zootaxa 5235 (1) on page 54, DOI: 10.11646/zootaxa.5235.1.1, http://zenodo.org/record/7610305
Minimizing readout-induced noise for early fault-tolerant quantum computers
Creators: name: Zheng, Yunzhe
name: Kanno, Keita
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Physics (quant-ph)
subject: Applied Physics (physics.app-ph)
subject: FOS: Physical sciences

description: Quantum error correcting code can diagnose potential errors and correct them based on measured outcomes by leveraging syndrome measurement. However, mid-circuit measurement has been technically challenging for early fault-tolerant quantum computers and the readout-induced noise acts as a main contributor to the logical infidelity. We present a different method for syndrome extraction, namely Generalized Syndrome Measurement, that requires only a single-shot measurement on a single ancilla, while the canonical syndrome measurement requires multiple measurements to extract the eigenvalue for each stabilizer generator. As such, we can detect the error in the logical state with minimized readout-induced noise. By adopting our method as a pre-check routine for quantum error correcting cycles, we can significantly reduce the readout overhead, the idling time, and the logical error rate during syndrome measurement. We numerically analyze the performance of our protocol using Iceberg code and Steane code under realistic noise parameters based on superconducting hardware and demonstrate the advantage of our protocol in the near-term scenario. As mid-circuit measurements are still error-prone for near-term quantum hardware, our method may boost the applications of early fault-tolerant quantum computing.
Asymptotic analysis of the weakly interacting Bose gas: A collection of recent results and applications
Creators: name: Boßmann, Lea
name: Leopold, Nikolai
name: Mitrouskas, David
name: Petrat, Sören
Publisher: name: arXiv
Year: 2023
Subjects: subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences
subject: 35Q40, 35Q55, 81Q05, 82C10

description: We consider a gas of N bosons with interactions in the mean-field scaling regime. We review a recent proof of the asymptotic expansion of its spectrum and eigenstates and two applications of this result, namely the derivation of an Edgeworth expansion for fluctuations of one-body operators and the computation of the binding energy of an inhomogeneous Bose gas to any order. Finally, we collect related results for the dynamics of the weakly interacting Bose gas and for the regularized Nelson model.
description: 12 pages
Sharp constants in inequalities admitting the Calderón transference principle
Creators: name: Kosz, Dariusz
Publisher: name: arXiv
Year: 2023
Subjects: subject: Dynamical Systems (math.DS)
subject: FOS: Mathematics
subject: 37A30, 42B25

description: The aim of this note is twofold. Firstly, we prove an abstract version of the Calderón transference principle for inequalities of admissible type in the general commutative multilinear and multiparameter setting. Such an operation does not increase the constants in the transferred inequalities. Secondly, we use the last information to study a certain dichotomy arising in problems of finding the best constants in the weak type $(1,1)$ and strong type $(p,p)$ inequalities for one-parameter ergodic maximal operators.
description: 9 pages
Protective effects of Maillard products of skipjack trypsin hydrolysate on uric acid-induced injury of human kidney-2 cell (HK-2)
Creators: name: Chu, Yurou
name: Wang, Jiaxing
name: Sun, Jipeng
name: Song, Ru
name: Chen, Liang
name: Zou, Xiaoyu
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: The uric acid (UA) induced damage influences human health and deserves attention. The purpose of this study was to investigate the protective effects of Skipjack trypsin hydrolysate (STH) and its Maillard product (STH-M) and the segmentation of STH-M (STH-M-S) against UA-induced HK-2 cells. The CCK8 assay was used to detect cell viability and flow cytometry was performed to check cell apoptosis and cell cycle and the functional mechanism was analyzed via transcriptome. The results showed STH-M-S could significantly improve the cell viability and inhibit cell apoptosis. Meanwhile, STH-M-S could influence the membrane and protein binding and regulate metabolic-related and immune-related pathways to deal with UA stress. Functional genes contained NEBL, KCNJ16, ABCA12, CLDN2, FLRT3, PRODH, KLHL14, VEPH1, HPGD (down regulated) and FOXL1, SCG5 (up regulated). Collectively, our results suggested that STH-M-S can alleviate cell injury induced by UA. STH-M-S could be an alternative to be applied for the treatment of hyperuricemia.
Tropidion atricolle
Creators: name: Ferreira, Gabriel Dos Santos
name: Ferreira, André Da Silva
name: Bravo, Freddy
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Tropidion
Tropidion atricolle

description: Tropidion atricolle (Martins, 1962)
Distribution. BRAZIL (Piauí, Bahia, Minas Gerais, and Rio de Janeiro).
description: Published as part of Ferreira, Gabriel Dos Santos, Ferreira, André Da Silva & Bravo, Freddy, 2023, Annotated checklist of Cerambycidae (Coleoptera: Chrysomeloidea) from the Brazilian semi-arid region, with new species and new geographic records, pp. 1-81 in Zootaxa 5235 (1) on page 54, DOI: 10.11646/zootaxa.5235.1.1, http://zenodo.org/record/7610305
Detection of the thaumatin-like protein gene from Brassica rapa var. oleifera in honey with the Proofman-LMTIA method
Creators: name: Yao, Wei
name: Xu, Dandan
name: Zhou, Dan
name: Liu, Jinxin
name: Zhang, Xiaohua
name: Wang, Yao
name: Wang, Deguo
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Honey adulteration has been on the rise with the increasing demand for high-quality honey. The ladders-shape melting temperature isothermal amplification (LMTIA) was a newly developed nucleic acid amplification technique, and the aim of this study was to establish a method combining the LMTIA with the proofreading enzyme-mediated probe cleavage (Proof-man probe) for detecting the thaumatin-like protein (TLP) genes of Brassica rapa var. oleifera in honey. The LMTIA primers was selected as a target to be designed, the temperature of the Proof-man LMTIA reaction was optimized, and the specificity, sensitivity, and applicability to the honey samples were determined. The results showed that the Proof-man LMTIA method was highly specific with a detection sensitivity of 30-40 copies genomic DNA/reaction at the optimal temperature of 60°C, and the amplification could be completed within 20 min. This method can detect the adulteration of low-price B. rapa honey into high-price honey.
Tropidion buriti Martins & Galileo 2012
Creators: name: Ferreira, Gabriel Dos Santos
name: Ferreira, André Da Silva
name: Bravo, Freddy
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Tropidion
Tropidion buriti

description: Tropidion buriti Martins & Galileo, 2012
Distribution. BRAZIL (Piauí).
description: Published as part of Ferreira, Gabriel Dos Santos, Ferreira, André Da Silva & Bravo, Freddy, 2023, Annotated checklist of Cerambycidae (Coleoptera: Chrysomeloidea) from the Brazilian semi-arid region, with new species and new geographic records, pp. 1-81 in Zootaxa 5235 (1) on page 54, DOI: 10.11646/zootaxa.5235.1.1, http://zenodo.org/record/7610305
Effect of high DHA and ARA fortification on lipid oxidation of infant formula powder
Creators: name: Jia, Hong-Xin
name: Qu, Ye-Zhi
name: Chen, Wen-Liang
name: Su, Mi-Ya
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Medicine
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Our objective was to assess the impact of fortified high-dose docosahexaenoic acid (DHA) and arachidonic acid (ARA) in infant formula powders (IFs) on stability. We compared and evaluated the stability of IFs containing high and low doses of DHA and ARA over a 6-month storage period at 37°C. While most formulations showed minimal changes in unsaturated fatty acid content of during storage, significant losses of DHA and ARA were observed in some high-dose formulations. Furthermore, this study noted consistent trends in the changes of vitamin C and vitamin E across both formula groups. Notably, the high-dose group formulas exhibited a higher presence of volatile organic compounds (VOCs) during storage, along with a more pronounced increase in thiobarbituric acid-reactive substance values (TBARS). In conclusion, the inclusion of high doses of DHA and ARA in IFs may compromise their oxidative stability.
Ultrasensitive Textile Strain Sensors Redefine Wearable Silent Speech Interfaces with High Machine Learning Efficiency
Creators: name: Tang, Chenyu
name: Xu, Muzi
name: Yi, Wentian
name: Zhang, Zibo
name: Occhipinti, Edoardo
name: Dong, Chaoqun
name: Ravenscroft, Dafydd
name: Jung, Sung-Min
name: Lee, Sanghyo
name: Gao, Shuo
name: Kim, Jong Min
name: Occhipinti, Luigi G.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Audio and Speech Processing (eess.AS)
subject: Sound (cs.SD)
subject: Signal Processing (eess.SP)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Computer and information sciences

description: Our research presents a wearable Silent Speech Interface (SSI) technology that excels in device comfort, time-energy efficiency, and speech decoding accuracy for real-world use. We developed a biocompatible, durable textile choker with an embedded graphene-based strain sensor, capable of accurately detecting subtle throat movements. This sensor, surpassing other strain sensors in sensitivity by 420%, simplifies signal processing compared to traditional voice recognition methods. Our system uses a computationally efficient neural network, specifically a one-dimensional convolutional neural network with residual structures, to decode speech signals. This network is energy and time-efficient, reducing computational load by 90% while achieving 95.25% accuracy for a 20-word lexicon and swiftly adapting to new users and words with minimal samples. This innovation demonstrates a practical, sensitive, and precise wearable SSI suitable for daily communication applications.
description: 5 figures in the article; 11 figures and 4 tables in supplementary information
Assessment of the whole genome sequencing of Lactiplantibacillus plantarum 13-3 for elucidation of novel bacteriocin producing gene cluster and confirmation of its potential probiotic functionality and safety applications
Creators: name: Aziz, Tariq
name: Naveed, Muhammad
name: Shabbir, Muhammad Aqib
name: Khan, Ayaz Ali
name: Sarwar, Abid
name: Haq, Taqweem Ul
name: Zhennai, Yang
name: Alharbi, Metab
name: Alasmari, Abdullah F.
name: Albekairi, Thamer H.
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Pharmacology
subject: Biotechnology
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: Lactiplantibacillus plantarum is a probiotic starter culture that improves the flavor and nutritional content of fermented foods. It also shows potential in enhancing mucosal and systemic immunity, which contributes to overall health. We aimed to examine the complex genetic composition of the L. plantarum 13–3 via a detailed analysis of comparative genomics and our findings discovered that this genome displays high efficacy and conciseness as a nutrition enhancer, encompassing a cumulative sum of 2921 genes encoding proteins and a GC content of 45%. This study clarifies the evolutionary lineage of L. plantarum strains by examining the level of gene order conservation and synteny across various strains. Our strain has been found to possess a range of genetic components, including bacteriocin gene clusters and prophage regions, which indicates its potential applicability in various fields, including biotechnology and medicine. The unique genetic components have the potential to reveal novel therapeutic and biotechnological applications in the future.
Nanocavity enhanced photon coherence of solid-state quantum emitters operating up to 30 K
Creators: name: Brash, Alistair J.
name: Iles-Smith, Jake
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Physics (quant-ph)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: Solid-state emitters such as epitaxial quantum dots have emerged as a leading platform for efficient, on-demand sources of indistinguishable photons, a key resource for many optical quantum technologies. To maximise performance, these sources normally operate at liquid helium temperatures ($\sim 4~\mathrm{K}$), introducing significant size, weight and power requirements that can be impractical for proposed applications. Here we experimentally resolve the two distinct temperature-dependent phonon interactions that degrade indistinguishability, allowing us to demonstrate that coupling to a photonic nanocavity can greatly improve photon coherence at elevated temperatures up to $30~\mathrm{K}$ that are compatible with compact cryocoolers. We derive a polaron model that fully captures the temperature-dependent influence of phonons observed in our experiments, providing predictive power to further increase the indistinguishability and operating temperature of future devices through optimised cavity parameters.
description: 18 pages, 4 figures
Examining the response of Botrytis cinerea to aqueous ozone: inactivation kinetics, structure, physiology, and growth in different strawberries cultivars
Creators: name: Bernal, Angela Romero
name: Raffellini, Silvia
name: Jaramillo-Sánchez, Gabriela
name: Alzamora, Stella Maris
name: Gómez, Paula Luisina
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Plant Biology

description: This work aimed to study the kinetics and mechanisms of Botrytis cinerea conidia inactivation by aqueous ozone treatments (2.5 ± 0.8 mg O3 L−1 and 4.2 ± 0.2 mg O3 L−1, 0.5–16 min), using conventional plate count technique, flow cytometry analysis (FCM), and transmission electron microscopy (TEM). The effect of treatments on the mold incidence on two artificially contaminated strawberries cultivars over refrigerated storage (6 ± 1 °C) was also investigated. The inactivation pattern of B. cinerea conidial suspensions depended on initial level of the microorganism, dissolved ozone concentration and treatment time. Non-linear survival curves were obtained and fitted successfully with the Weibullian model. FCM and TEM analysis revealed alterations in the physiological state and ultrastructure of ozonated conidia that depended on the ozone dose. Ozonation (4.4 mg O3L−1, 5–10 min) reduced B. cinerea incidence throughout storage in strawberries of cv. Fortuna, but no effect was found in cv. Aroma.
Patterns of Multi-Container Composition for Service Orchestration with Docker Compose
Creators: name: Eng, Kalvin
name: Hindle, Abram
name: Stroulia, Eleni
Publisher: name: arXiv
Year: 2023
Subjects: subject: Software Engineering (cs.SE)
subject: FOS: Computer and information sciences

description: Software design patterns present general code solutions to common software design problems. Modern software systems rely heavily on containers for running their constituent service components. Yet, despite the prevalence of ready-to-use Docker service images ready to participate in multi-container service compositions of applications, developers do not have much guidance on how to compose their own Docker service orchestrations. Thus in this work, we curate a dataset of successful projects that employ Docker Compose as an orchestration tool to run multiple service containers; then, we engage in qualitative and quantitative analysis of Docker Compose configurations. The collection of data and analysis enables the identification and naming of repeating multi-container composition patterns that are used in numerous successful open-source projects, much like software design patterns. These patterns highlight how software systems are orchestrated in the real-world and can give examples to anybody wishing to compose their own service orchestrations. These contributions also advance empirical research in software engineering patterns as evidence is provided about how Docker Compose is used.
Effect of slightly acidic hypochlorous water incorporation on the physical, mechanical, and antibacterial properties of chitosan film for chicken egg preservation
Creators: name: Wang, Qianqian
name: Mao, Yizhou
name: Zhong, Caixia
name: Wang, Shuyan
name: Xu, Long
name: Gao, Yuping
name: Wang, Han
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Physical Sciences not elsewhere classified
subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified

description: Eggs, a rich source of protein, vitamins, and minerals, rapidly decline in nutritional quality post-laying due to physicochemical changes, exacerbated by poor storage. Chitosan, a biodegradable antibacterial polysaccharide, has the ability to enhance the preservation of egg when it combined with Slightly acidic hypochlorous water (SAHW). This study investigates the potential of chitosan-SAHW composite films for preserving egg quality by systematically evaluating the films’ properties across different SAHW concentrations. Results showed increased film density and decreased moisture content with SAHW addition. Optimal mechanical properties were observed at 20 mg/L SAHW, while 40 mg/L SAHW films were most effective against microbes. Eggs coated with these films, especially at 20 mg/L and 30 mg/L SAHW, maintained quality significantly better over 49 days, reducing weight loss, preserving the Haugh unit, and stabilizing pH. These findings suggest chitosan-SAHW films effectively extend egg shelf life, warranting further research for broader applications.
MOESM4 of Anti-malarial treatment outcomes in Ethiopia: a systematic review and meta-analysis
Creators: name: Eyob Gebreyohannes
name: Akshaya Bhagavathula
name: Seid, Mohammed
name: Henok Tegegn
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Additional file 4. Funnel plot: assessment of publication bias.
Tropidion castaneum Martins 1968
Creators: name: Ferreira, Gabriel Dos Santos
name: Ferreira, André Da Silva
name: Bravo, Freddy
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Tropidion
Tropidion castaneum

description: Tropidion castaneum Martins, 1968
Distribution. BRAZIL (Bahia, Minas Gerais, and Mato Grosso do Sul), BOLIVIA (Santa Cruz), and PARAGUAY.
Material examined. 1 specimen, BRAZIL: “ BAHIA: Aracatu, Fazenda Lagoa do Tamburi, BA 263, km 400, sentido Vitória da Conquista /Brumado, Caatinga arbórea, trilha do umbuzeiro, 23–23.xii.2012, Ferreira, A.S. & Sodré, L.G.F. leg.” (MZFS); 1 specimen: “ Aracatu, Fazenda Lagoa do Tamburi, BA 263, km 400, sentido Vitória da Conquista / Brumado, Caatinga arbórea, trilha do umbuzeiro, Armadilha luminosa, 1.xii.2013, Ferreira, A.S. leg.” (MZFS); 1 specimen: “ Aracatu, Fazenda Lagoa do Tamburi, BA 263, km 400, sentido Vitória da Conquista / Brumado, Caatinga arbórea, trilha do umbuzeiro, 26.x.2019, Ferreira, A.S. leg.” (MZFS).
description: Published as part of Ferreira, Gabriel Dos Santos, Ferreira, André Da Silva & Bravo, Freddy, 2023, Annotated checklist of Cerambycidae (Coleoptera: Chrysomeloidea) from the Brazilian semi-arid region, with new species and new geographic records, pp. 1-81 in Zootaxa 5235 (1) on page 54, DOI: 10.11646/zootaxa.5235.1.1, http://zenodo.org/record/7610305
Reducing Rydberg state dc polarizability by microwave dressing
Creators: name: Bohorquez, J. C.
name: Chinnarasu, R.
name: Isaacs, J.
name: Booth, D.
name: Beck, M.
name: McDermott, R.
name: Saffman, M.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Atomic Physics (physics.atom-ph)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We demonstrate reduction of the dc polarizability of Cesium atom Rydberg states in a 77 K environment utilizing microwave field dressing. In particular we reduce the polarizability of $52P_{3/2}$ states which have resonances at 5.35 GHz to $51D_{5/2}$, suitable for interfacing Rydberg atoms to superconducting resonators in a cryogenic environment. We measure the polarizability of the Rydberg states using Magneto-Optical-Trap (MOT) loss spectroscopy. Using an off-resonant radio-frequency (RF) dressing field coupling $52P_{3/2}$ and $51D_{5/2}$ we demonstrate a reduction in dc polarizability of the $ 52P_{3/2}$ states over 80$\%$. Experimental findings are in good agreement with a numerical model of the atom-dressing field system developed using the Shirley-Floquet formalism. We also demonstrate that the dc polarizability reduction is highly anisotropic, with near total nulling possible when the dc and dressing fields are aligned, but only a factor of two reduction in polarizability when the fields are orthogonal. These results may aid in stabilizing Rydberg resonances against varying dc fields present near surfaces, enabling advancement in the development of hybrid Rydberg atom - superconducting resonator quantum gates.
description: figure labeling corrected, and polarizability values added
MOESM1 of
                     Trichoderma reesei complete genome sequence, repeat-induced point mutation, and partitioning of CAZyme gene clusters
Creators: name: Wan-Chen Li
name: Chien-Hao Huang
name: Chia-Ling Chen
name: Yu-Chien Chuang
name: Tung, Shu-Yun
name: Wang, Ting-Fang
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Pharmacology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Additional file 1: Table A1. Preliminary assembly results obtained by the Hierarchical Genome Assembly Process (HGAP 3.0). Table A2. Error corrections of the seven PacBio unitigs using the Illimina-MiSeq reads. Table A3. Characteristics and assembly of the seven QM6a chromosomes. Table A4. Mapping of all trimmed paired-end Illumina MiSeq reads to three QM6a genome drafts. Table A5. The MiSeq reads mapped to the QM6a-v2.0 draft genome. Table A6. Sixteen false predicted genes in QM6a-v2.0. Table A7. The QM6a-v2.0 draft genome compared to the complete QM6a genome sequence. Table A8. The HiC draft genome compared to the complete QM6a genome sequence. Table A9. PCR primers. Table A10. The complete QM6a genome sequence versus the RUT-C30-v1.0 draft genome. Table A11. Gene Ontology of some newly-predicted genes. Table A12. Sequencing quality of 18 different fungal genomes. Table A13. RIP indices of various sequences in QM6a and Neurospora crassa. Table A14. Repeat-induced C-to-T mutations observed in the hph alleles in all F1 progeny. Table A15. Saccharomyces cerevisiae Ty elements by chromosome. Table A16. Transposable elements in 12 well-assembled fungal genomes. Table A17. Repetitive sequences in different chromosomal regions. Table A18. Repetitive sequences in seven QM6a chromosomes. Table A19. Partitioning of four gene clusters by the AT-rich islands. The TPM values in glucose (48 hrs), in straw (24 hrs) and in straw (24hrs) then glucose (5 hrs) are shown [24].
Additional file 1: of Human limbal fibroblast-like stem cells induce immune-tolerance in autoreactive T lymphocytes from female patients with Hashimoto’s thyroiditis
Creators: name: Coppola, Antonina
name: Tomasello, Laura
name: Pitrone, Maria
name: Cillino, Salvatore
name: Richiusa, Pierina
name: Pizzolanti, Giuseppe
name: Giordano, Carla
Publisher: name: Figshare
Year: 2017
Subjects: subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Immunophenotyping of BM-MSCs. (A) The immunological profile of BM-MSCs was assessed by flow cytometry before (upper panel) and after 48 h of cytokine-treatment (IL-1β, IL-6, and IFNγ, 500 U/ml) (lower panel) using the same Abs for f-LSC immune characterization. All histogram plots include the percentage of expression of each protein as representative value of five independent experiments. (PDF 572 kb)
Tropidion igneicolle
Creators: name: Ferreira, Gabriel Dos Santos
name: Ferreira, André Da Silva
name: Bravo, Freddy
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Tropidion
Tropidion igneicolle

description: Tropidion igneicolle (Martins, 1962)
Distribution. BRAZIL (Bahia, Minas Gerais and S„o Paulo).
Material examined. 1 specimen, BRAZIL: “ BAHIA: Aracatu, Fazenda Lagoa do Tamburi, BA 263, km 400, sentido Vitória da Conquista / Brumado. Caatinga arbórea. Malaise trap. 10.x.2018 – i.2019. Ferreira, A.S. leg.
description: Published as part of Ferreira, Gabriel Dos Santos, Ferreira, André Da Silva & Bravo, Freddy, 2023, Annotated checklist of Cerambycidae (Coleoptera: Chrysomeloidea) from the Brazilian semi-arid region, with new species and new geographic records, pp. 1-81 in Zootaxa 5235 (1) on page 54, DOI: 10.11646/zootaxa.5235.1.1, http://zenodo.org/record/7610305