cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Suppressing chemotactic blow-up through a fast splitting scenario on the plane
Creators: name: He, Siming
name: Tadmor, Eitan
Publisher: name: arXiv
Year: 2017
Subjects: subject: Analysis of PDEs (math.AP)
subject: FOS: Mathematics

description: We revisit the question of global regularity for the Patlak-Keller-Segel (PKS) chemotaxis model. The classical 2D hyperbolic-elliptic model blows up for initial mass M>8π. We consider more realistic scenario which takes into account the flow of the ambient environment induced by harmonic potentials, and thus retain the identical elliptic structure as in the original PKS. Surprisingly, we find that already the simplest case of linear stationary vector field, $Ax^\top$, with large enough amplitude $A$, prevents chemotactic blow-up. Specifically, the presence of such an ambient fluid transport creates what we call a 'fast splitting scenario', which competes with the focusing effect of aggregation so that 'enough mass' is pushed away from concentration along the $x_1$-axis, thus avoiding a finite time blow-up, at least for M<16π. Thus, the enhanced ambient flow doubles the amount of allowable mass which evolve to global smooth solutions.
Additional file 2 of Acteoside as a potential therapeutic option for primary hepatocellular carcinoma: a preclinical study
Creators: name: Ma, Di
name: Wang, Juan
name: Liu, Lu
name: Chen, Meiqi
name: Wang, Zhiyong
Publisher: name: figshare
Year: 2020
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Hematology

description: Additional file 2.
Additional file 15: of Loss of miR-204 expression is a key event in melanoma
Creators: name: Galasso, Marco
name: Morrison, Carl
name: Minotti, Linda
name: CorrĂ, Fabio
name: Zerbinati, Carlotta
name: Agnoletto, Chiara
name: Baldassari, Federica
name: Fassan, Matteo
name: Bartolazzi, Armando
name: Vecchione, Andrea
name: Nuovo, Gerard
name: Leva, Gianpiero Di
name: DâAtri, Stefania
name: Alvino, Ester
name: Previati, Maurizio
name: Nickoloff, Brian
name: Croce, Carlo
name: Volinia, Stefano
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology

description: Additional methods and data. (PDF 155Â kb)
Co-creation using crowdsourcing to promote PrEP adherence in China: study protocol for a stepped-wedge randomized controlled trial
Creators: name: Wu, Songjie
name: Li, Quanmin
name: Liang, Ke
name: Sha, Yongjie
name: Tang, Weiming
name: Hazra, Aniruddha
name: Huang, Haojie
name: Lio, Jonathan
name: Gong, Dandan
name: Li, Chunyan
name: Li, Linghua
name: Kerman, Jared
name: Tucker, Joseph D.
name: Sherer, Renslow
name: Xiong, Yuan
name: Jiang, Ivy
name: Molina, Jannelle
Publisher: name: Springer Nature
Year: 2022

description:
Background Adherent pre-exposure prophylaxis (PrEP) uptake can prevent HIV infections. Despite the high HIV incidence, Chinese key populations have low PrEP uptake and adherence. New interventions are needed to increase PrEP adherence among key populations in China. Co-creation methods are helpful to solicit ideas from the community to solve public health problems. The study protocol aims to describe the design of a stepped-wedge trial and to evaluate the efficacy of co-created interventions to facilitate PrEP adherence among key populations in China. Methods The study will develop intervention packages to facilitate PrEP adherence among Chinese key populations using co-creation methods. The study will then evaluate the efficacy of the co-created intervention packages using a stepped-wedge randomized controlled trial. This four-phased closed cohort stepped-wedge design will have four clusters. Each cluster will start intervention at three-month intervals. Seven hundred participants who initiated PrEP will be recruited. Participants will be randomized to the clusters using block randomization. The intervention condition includes receiving co-created interventions in addition to standard of care. The control condition is the standard of care that includes routine clinical assessment every 3 months. All participants will also receive an online follow-up survey every 3 months to record medication adherence and will be encouraged to use a WeChat mini-app for sexual and mental health education throughout the study. The primary outcomes are PrEP adherence and retention in PrEP care throughout the study period. We will examine a hypothesis that a co-created intervention can facilitate PrEP adherence. Generalized linear mixed models will be used for the primary outcome analysis. Discussion Developing PrEP adherence interventions in China faces barriers including suboptimal PrEP uptake among key populations, the lack of effective PrEP service delivery models, and insufficient community engagement in PrEP initiatives. Our study design addresses these obstacles by using co-creation to generate social media-based intervention materials and embedding the study design in the local healthcare system. The study outcomes may have implications for policy and intervention practices among CBOs and the medical system to facilitate PrEP adherence among key populations. Trial registration The study is registered in Clinical Trial databases in China (ChiCTR2100048981, July 19, 2021) and the US (NCT04754139, February 11, 2021).
Supplementary document for Laser-amplified nonvolatile charge trap effect observed in semiconductor quantum dots based structure - 6472602.pdf
Creators: name: Cao, Yuhong
name: Jiang, Kangan
name: Zhao, Zhuyikang
name: Wang, Hui
Publisher: name: Optica Publishing Group
Year: 2023
Subjects: Uncategorized

description: Supplemental Document
Additional file 1 of How medical students co-regulate their learning in clinical clerkships: a social network study
Creators: name: Bransen, Derk
name: Driessen, Erik W.
name: Sluijsmans, Dominique M. A.
name: Govaerts, Marjan J. B.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1. Self-Regulated Learning at Work Questionnaire.
The Factory and the Beehive III: PTFEB132.707+19.810, a Low-Mass Eclipsing Binary in Praesepe Observed by PTF and K2
Creators: name: Kraus, Adam L.
name: Douglas, Stephanie T.
name: Mann, Andrew W.
name: Agueros, Marcel A.
name: Law, Nicholas M.
name: Covey, Kevin R.
name: Feiden, Gregory A.
name: Rizzuto, Aaron C.
name: Howard, Andrew W.
name: Isaacson, Howard
name: Gaidos, Eric
name: Torres, Guillermo
name: Bakos, Gaspar
Publisher: name: arXiv
Year: 2017
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Theoretical models of stars constitute a fundamental bedrock upon which much of astrophysics is built, but large swaths of model parameter space remain uncalibrated by observations. The best calibrators are eclipsing binaries in clusters, allowing measurement of masses, radii, luminosities, and temperatures, for stars of known metallicity and age. We present the discovery and detailed characterization of PTFEB132.707+19.810, a P=6.0 day eclipsing binary in the Praesepe cluster ($τ$~600--800 Myr; [Fe/H]=0.14$\pm$0.04). The system contains two late-type stars (SpT$_P$=M3.5$\pm$0.2; SpT$_S$=M4.3$\pm$0.7) with precise masses ($M_p=0.3953\pm0.0020$~$M_{\odot}$; $M_s=0.2098\pm0.0014$~$M_{\odot}$) and radii ($R_p=0.363\pm0.008$~$R_{\odot}$; $R_s=0.272\pm0.012$~$R_{\odot}$). Neither star meets the predictions of stellar evolutionary models. The primary has the expected radius, but is cooler and less luminous, while the secondary has the expected luminosity, but is cooler and substantially larger (by 20%). The system is not tidally locked or circularized. Exploiting a fortuitous 4:5 commensurability between $P_{orb}$ and $P_{rot,prim}$, we demonstrate that fitting errors from the unknown spot configuration only change the inferred radii by <1--2%. We also analyze subsets of data to test the robustness of radius measurements; the radius sum is more robust to systematic errors and preferable for model comparisons. We also test plausible changes in limb darkening, and find corresponding uncertainties of ~1%. Finally, we validate our pipeline using extant data for GU Boo, finding that our independent results match previous radii to within the mutual uncertainties (2--3%). We therefore suggest that the substantial discrepancies are astrophysical; since they are larger than for old field stars, they may be tied to the intermediate age of PTFEB132.707+19.810.
description: Accepted to ApJ; 36 pages, 19 figures, 8 tables in two-column AASTEX6 format
Additional file 1 of Magnetic vagus nerve stimulation alleviates myocardial ischemia-reperfusion injury by the inhibition of pyroptosis through the M2AChR/OGDHL/ROS axis in rats
Creators: name: Lu, Yao
name: Chen, Kaiyan
name: Zhao, Wei
name: Hua, Yan
name: Bao, Siyuan
name: Zhang, Jian
name: Wu, Tianyu
name: Ge, Gaoyuan
name: Yu, Yue
name: Sun, Jianfei
name: Zhang, Fengxiang
Publisher: name: figshare
Year: 2023
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Neuroscience
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology

description: Supplementary Material 1
Mixing of $t_{2g}$-$e_g$ orbitals in 4d and 5d transition metal oxides
Creators: name: Stamokostas, Georgios L.
name: Fiete, Gregory A.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Using exact diagonalization, we study the spin-orbit coupling and interaction-induced mixing between $t_{2g}$ and $e_g$ $d$-orbital states in a cubic crystalline environment, as commonly occurs in transition metal oxides. We make a direct comparison with the widely used $t_{2g}$ only or $e_g$ only model, depending on electronic filling. We consider all electron fillings of the $d$-shell and compute the total magnetic moment, the spin, the occupancy of each orbital, and the effective spin-orbit coupling strength (renormalized through interaction effects) in terms of the bare interaction parameters, spin-orbit coupling, and crystal field splitting, focusing on the parameter ranges relevant to 4d and 5d transition metal oxides. In various limits we provide perturbative results consistent with our numerical calculations. We find that the $t_{2g}$-$e_g$ mixing can be large, with up to 20\% occupation of orbitals that are nominally "empty", which has experimental implications for the interpretation of the branching ratio in experiments, and can impact the effective local moment Hamiltonian used to study magnetic phases and magnetic excitations in transition metal oxides. Our results can aid the theoretical interpretation of experiments on these materials, which often fall in a regime of intermediate coupling with respect to electron-electron interactions.
description: 15 pages, 12 figures
Additional file 2 of How medical students co-regulate their learning in clinical clerkships: a social network study
Creators: name: Bransen, Derk
name: Driessen, Erik W.
name: Sluijsmans, Dominique M. A.
name: Govaerts, Marjan J. B.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 2: Supplementary Table 1. Percentages of first-, second-, and third-year students engaging others in their co-regulatory networks for five regulatory purposes.
Subdomain Deflation Combined with Local AMG: a Case Study Using AMGCL Library
Creators: name: Demidov, Denis
name: Rossi, Riccardo
Publisher: name: arXiv
Year: 2017
Subjects: subject: Distributed, Parallel, and Cluster Computing (cs.DC)
subject: Mathematical Software (cs.MS)
subject: Numerical Analysis (math.NA)
subject: FOS: Computer and information sciences
subject: FOS: Mathematics
subject: D.1.3; G.1.0; G.1.8

description: The paper proposes a combination of the subdomain deflation method and local algebraic multigrid as a scalable distributed memory preconditioner that is able to solve large linear systems of equations. The implementation of the algorithm is made available for the community as part of an open source AMGCL library. The solution targets both homogeneous (CPU-only) and heterogeneous (CPU/GPU) systems, employing hybrid MPI/OpenMP approach in the former and a combination of MPI, OpenMP, and CUDA in the latter cases. The use of OpenMP minimizes the number of MPI processes, thus reducing the communication overhead of the deflation method and improving both weak and strong scalability of the preconditioner. The examples of scalar, Poisson-like, systems as well as non-scalar problems, stemming out of the discretization of the Navier-Stokes equations, are considered in order to estimate performance of the implemented algorithm. A comparison with a traditional global AMG preconditioner based on a well-established Trilinos ML package is provided.
description: 21 pages, 7 figures
Additional file 1 of Divergent selection for natural antibodies in poultry in the presence of a major gene
Creators: name: Bovenhuis, Henk
name: Berghof, Tom V. L.
name: Visker, Marleen H. P. W.
name: Arts, Joop A. J.
name: Visscher, Jeroen
name: van der Poel, Jan J.
name: Parmentier, Henk K.
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Table S1. Number of selected sires and dams for the High and Low selection lines.
The 26.3-hr orbit and multi-wavelength properties of the "redback" millisecond pulsar PSR J1306-40
Creators: name: Linares, Manuel
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: We present the discovery of the variable optical and X-ray counterparts to the radio millisecond pulsar (MSP) PSR J1306-40, recently discovered by Keane et al. We find that both the optical and X-ray fluxes are modulated with the same period, which allows us to measure for the first time the orbital period P$_{\rm orb}$=1.09716[6] d. The optical properties are consistent with a main sequence companion with spectral type G to mid K and, together with the X-ray luminosity (8.8$\times$10$^{31}$ erg s$^{-1}$ in the 0.5-10 keV band, for a distance of 1.2 kpc), confirm the redback classification of this pulsar. Our results establish the binary nature of PSR J1306-40, which has the longest P$_{\rm orb}$ among all known compact binary MSPs in the Galactic disk. We briefly discuss these findings in the context of irradiation and intrabinary shock emission in compact binary MSPs.
description: 5 pages, 3 figures, MNRAS, accepted (minor changes after referee report). In memory of our esteemed colleague Enrique Garc\'ia-Berro
Additional file 3: of Linc00659, a long noncoding RNA, acts as novel oncogene in regulating cancer cell growth in colorectal cancer
Creators: name: Kuo-Wang Tsai
name: Yi-Hao Lo
name: Liu, Hsuan
name: Chung-Yu Yeh
name: You-Zuo Chen
name: Chao-Wen Hsu
name: Wei-Shone Chen
name: Jui-Ho Wang
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Plant Biology

description: Figure S3. Examination of the subcellular fractionation localization of Linc00659 in CRC cell lines. After nuclear and cytosolic separation, total RNA from Lovo, HCT116, HT29, SW620 and DLD-1 cells underwent RT and real-time PCR. GAPDH was used as a cytosol marker (A) and U6 was used as a nucleus marker (B). (C) RNA expression levels of Linc00659 candidates in the nucleus and cytoplasm were measured by real-time PCR, respectively. CRC, colorectal cancer; GAPDH, glyceraldehyde 3-phosphate dehydrogenase; PCR, polymerase chain reaction. (DOCX 109Â kb)
Additional file 2 of Divergent selection for natural antibodies in poultry in the presence of a major gene
Creators: name: Bovenhuis, Henk
name: Berghof, Tom V. L.
name: Visker, Marleen H. P. W.
name: Arts, Joop A. J.
name: Visscher, Jeroen
name: van der Poel, Jan J.
name: Parmentier, Henk K.
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2: Figure S1. Standardized realized selection differentials for males in the High and Low selection lines. Figure S2. Standardized realized selection differentials for females in the High and Low selection lines.
Phase matched nonlinear optics via patterning layered materials
Creators: name: Fryett, Taylor
name: Zhan, Alan
name: Majumdar, Arka
Publisher: name: arXiv
Year: 2017
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: The ease of integration coupled with large second-order nonlinear coefficient of atomically thin layered 2D materials presents a unique opportunity to realize second-order nonlinearity in silicon compatible integrated photonic system. However, the phase matching requirement for second-order nonlinear optical processes makes the nanophotonic design difficult. We show that by nano-patterning the 2D material, quasi-phase matching can be achieved. Such patterning based phase-matching could potentially compensate for inevitable fabrication errors and significantly simplify the design process of the nonlinear nano-photonic devices.
Additional file 1 of One-pot production of butyl butyrate from glucose using a cognate “diamond-shaped” E. coli consortium
Creators: name: Sinumvayo, Jean Paul
name: Zhao, Chunhua
name: Liu, Guoxia
name: Li, Yin
name: Zhang, Yanping
Publisher: name: figshare
Year: 2021
Subjects: subject: Microbiology
subject: FOS: Biological sciences

description: Additional file 1. Additional figures and table.
Hunger increases delay discounting of food and non-food rewards
Creators: name: Skrynka, Jordan
name: Vincent, Benjamin
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: homeostasis
subject: hunger
subject: intertemporal choice
subject: self-control
subject: temporal discounting
subject: time preference
subject: valuation

description: How do our valuation systems change to homeostatically correct undesirable psychological or physiological states, such as those caused by hunger? There is evidence that hunger increases discounting for food rewards, biasing choices towards smaller but sooner food reward over larger but later reward. However, it is not understood how hunger modulates delay discounting for non-food items. We outline and quantitatively evaluate six possible models of how our valuation systems modulate discounting of various commodities in the face of the undesirable state of being hungry. With a repeated-measures design, an experimental hunger manipulation, and quantitative modeling, we find strong evidence that hunger causes large increases in delay discounting for food, with an approximately 25% spillover effect to non-food commodities. The results provide evidence that in the face of hunger, our valuation systems increase discounting for commodities, which cannot achieve a desired state change as well as for those commodities that can. Given that strong delay discounting can cause negative outcomes in many non-food (consumer, investment, medical, or inter-personal) domains, the present findings suggest caution may be necessary when making decisions involving non-food outcomes while hungry.
Additional file 6: Figure S5. of Co-circulation of different A. phagocytophilum variants within cattle herds and possible reservoir role for cattle
Creators: name: Anne-Claire Lagrée
name: Rouxel, Clotilde
name: Maëllys Kevin
name: Dugat, Thibaud
name: Girault, Guillaume
name: Durand, Benoît
name: Pfeffer, Martin
name: Silaghi, Cornelia
name: Nieder, Marion
name: Henri-Jean Boulouis
name: Haddad, Nadia
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: NJ tree obtained using the concatenation of typA, ctrA, and msp4. Legends as in Fig. 1. (PDF 1438 kb)
MOESM1 of Integrative genomic analyses of APOBEC-mutational signature, expression and germline deletion of APOBEC3 genes, and immunogenicity in multiple cancer types
Creators: name: Chen, Zhishan
name: Wen, Wanqing
name: Bao, Jiandong
name: Kuhs, Krystle
name: Cai, Qiuyin
name: Long, Jirong
name: Shu, Xiao-ou
name: Zheng, Wei
name: Guo, Xingyi
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Additional file 1: Table S1. Associations between APOBEC-mutational signature and gene expression levels of APOBEC3A and APOBEC3B. Table S2. Associations between APOBEC-mutational signature and gene expression levels of APOBEC3C, APOBEC3D, APOBEC3F, APOBEC3G, and APOBEC3H. Table S3. Associations between APOBEC-mutational signature and each isoform expression level of APOBEC3A and APOBEC3B. Table S4. Expression correlation between APOBEC3A with the isoform uc011aoc for each cancer types. Table S5. Associations between APOBEC-mutational signature and isoform of APOBEC3A and APOBEC3B stratified by clinical subtypes in breast cancer. Table S6. The distribution of deletion genotypes in samples for each cancer type. Table S7. A list of top enriched canonical pathways for genes that were co-expressed with the isoform uc011aoc across cancer types. Table S8. Associations between predicted neoantigen loads and germline APOBEC3A/B deletion. Table S9. Associations between predicted neoantigen loads and APOBEC-mutational signature. Table S10. Associations between predicted neoantigen loads and proportion of APOBEC-mutational signature. Table S11. Associations between abundance of relative immune cell compositions in TILs and neoantigen loads. Table S12. Associations between abundance of relative immune cell compositions in TILs and APOBEC-mutational signature. Figure S1. The expression levels of six isoforms of APOBEC3A and ABOBEC3B for each cancer type.
Protocol 2: Role of decentralized trials to evaluate treatments for children with rare diseases: A scoping review protocol
Creators: name: Smith, Maureen
name: Iverson, Emma
name: Offringa, Martin
name: Potter, Beth
name: Presseau, Justin
name: Wubalem Muchie
Publisher: name: OSF
Year: 2025

description: This project aims to identify and describe decentralized trials in the field of rare diseases in children and understand how strengths and weaknesses of decentralized trials are viewed by trialists.
Health, medicine and disease among the Hiberno-Norse from 800 to 1200 AD
Creators: name: GRACE, PIERCE
Publisher: name: University of Limerick
Year: 2024
Subjects: classificationCode: 42
subject: Health sciences
subject: FOS: Health sciences
classificationCode: 43
subject: History, heritage and archaeology

description: Culturally distinct Hiberno-Norse communities were prominent in Ireland from the ninth to the thirteenth centuries. Using historical, archaeological, literary and biological evidence this paper describes the experience of health, medicine and disease in this population during the period under review. Overall, the Hiber-no-Norse people appear to have been prosperous, enjoyed good health and lived well, although some individuals were malnourished. Epidemics of unknown aetiology occasionally affected the Hiberno-Norse, through whom leprosy may have been introduced to Ireland. When disease struck, diet, herbs and surgery were resorted to by healers, many of whom are likely to have been women. This paper argues that Hiberno-Norse medical practice derived from both Gaelic and Norse traditions
Mackey formula for bisets over groupoids
Creators: name: Kaoutit, Laiachi El
name: Spinosa, Leonardo
Publisher: name: arXiv
Year: 2017
Subjects: subject: Group Theory (math.GR)
subject: Representation Theory (math.RT)
subject: FOS: Mathematics
subject: Primary 18B40, 20L05, 22F05, Secondary 20C15, 13A50

description: In this paper we establish the Mackey formula for groupoids, extending the well known formula in abstract groups context. This formula involves the notion of groupoid-biset, its orbit set and the tensor product over groupoids, as well as cosets by subgroupoids.
description: 24 pages, section 5 added, further minor modifications
Additional file 3 of Divergent selection for natural antibodies in poultry in the presence of a major gene
Creators: name: Bovenhuis, Henk
name: Berghof, Tom V. L.
name: Visker, Marleen H. P. W.
name: Arts, Joop A. J.
name: Visscher, Jeroen
name: van der Poel, Jan J.
name: Parmentier, Henk K.
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3: Figure S3. Average inbreeding in the High and Low selection lines. Figure S4. Realized and expected selection response for IgTotal in the High and Low selection lines. Figure S5. Realized and expected correlated selection response for IgM in the High and Low selection lines. Figure S6. Realized and expected correlated selection response for IgG in the High and Low selection lines.
Additional file 1: of Oxysterol levels and metabolism in the course of neuroinflammation: insights from in vitro and in vivo models
Creators: name: Mutemberezi, Valentin
name: Buisseret, Baptiste
name: Masquelier, Julien
name: Owein Guillemot-Legris
name: Alhouayek, Mireille
name: Muccioli, Giulio
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Figure S1. Activation of BV2 cells and oxysterol levels in control BV2 cells. (A) 2.5 × 105 cells were incubated with vehicle (CTL) or LPS (100 ng/mL) for the indicated time points. mRNA was extracted and RT-qPCR performed for IL-1β, IL-6, and TNF-α. The data are expressed as the mean ± S.E.M in percentage of the respective CTL. ***p
Additional file 4 of Divergent selection for natural antibodies in poultry in the presence of a major gene
Creators: name: Bovenhuis, Henk
name: Berghof, Tom V. L.
name: Visker, Marleen H. P. W.
name: Arts, Joop A. J.
name: Visscher, Jeroen
name: van der Poel, Jan J.
name: Parmentier, Henk K.
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 4: Figure S7. Additive genetic variance due to the TLR1A polymorphism as a function of the C allele frequency. Frequency of the TLR1A C allele (based on imputed genotypes) was 0.45 in the base population [15], 0.04 and in generation 7 of the Low line and 0.66 in generation 7 of the High line.
Anisotropic chiral magnetic effect from tilted Weyl cones
Creators: name: van der Wurff, E. C. I.
name: Stoof, H. T. C.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We determine the antisymmetric current-current response for a pair of (type I) tilted Weyl cones with opposite chirality. We find that the dynamical chiral magnetic effect depends on the magnitude of the tilt and on the angle between the tilting direction and the wave vector of the magnetic field. Additionally, the chiral magnetic effect is shown to be closely related to the presence of an intrinsic anomalous Hall effect with a current perpendicular to the tilting direction and the electric field. We investigate the nonanalytic long-wavelength limit of the corresponding transport coefficients.
description: 5 pages; 5 figures; 8 pages supplemental material; second version includes responses to the referee reports
Additional file 2: of Linc00659, a long noncoding RNA, acts as novel oncogene in regulating cancer cell growth in colorectal cancer
Creators: name: Kuo-Wang Tsai
name: Yi-Hao Lo
name: Liu, Hsuan
name: Chung-Yu Yeh
name: You-Zuo Chen
name: Chao-Wen Hsu
name: Wei-Shone Chen
name: Jui-Ho Wang
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Figure S2. Stable knockdown of Linc00659 expression with shLinc00659#2 suppressed HCT116 cell growth. (A) The expression levels of Linc00659 were examined in HCT116 cells with stable shLinc00659#2 knockdown. (B) and (C) The cell proliferation and colony formation assays were performed: (D) graph illustrating quantified values. (E) The effects of Linc00659 knockdown on anchorage-independent growth of HCT116 were examined by a soft agar formation assay: (F) graph illustrating quantified values. Data are reported as the number of colonies relative to the control (means Âą standard deviation). (DOCX 205Â kb)
Additional file 1 of Anti-NMDAR encephalitis induced in mice by active immunization with a peptide from the amino-terminal domain of the GluN1 subunit
Creators: name: Ding, Yuewen
name: Zhou, Zheye
name: Chen, Jinyu
name: Peng, Yu
name: Wang, Haitao
name: Qiu, Wei
name: Xie, Wei
name: Zhang, Jun
name: Wang, Honghao
Publisher: name: figshare
Year: 2021
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Immunology
subject: FOS: Clinical medicine
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. Supplementary Methods.
Additional file 5 of Divergent selection for natural antibodies in poultry in the presence of a major gene
Creators: name: Bovenhuis, Henk
name: Berghof, Tom V. L.
name: Visker, Marleen H. P. W.
name: Arts, Joop A. J.
name: Visscher, Jeroen
name: van der Poel, Jan J.
name: Parmentier, Henk K.
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 5: Figure S8. Realized and expected changes of TLR1A allele frequencies. Theoretically expected changes in TLR1A frequencies due to mass selection for IgTotal.
Improved measurement of two-mode quantum correlations using a phase-sensitive amplifier
Creators: name: Li, Tian
name: Anderson, Brian E.
name: Horrom, Travis
name: Schmittberger, Bonnie L.
name: Jones, Kevin M.
name: Lett, Paul D.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We demonstrate the ability of a phase-sensitive amplifier (PSA) to pre-amplify a selected quadrature of one mode of a two-mode squeezed state in order to improve the measurement of two-mode quantum correlations that exist before degradation due to optical and detection losses. We use four-wave mixing (4WM) in $^{85}$Rb vapor to generate bright beams in a two-mode squeezed state. One of these two modes then passes through a second 4WM interaction in a PSA configuration to noiselessly pre-amplify the desired quadrature of the mode before loss is intentionally introduced. We demonstrate an enhancement in the measured degree of intensity correlation and intensity-difference squeezing between the two modes.
description: 11 pages, 5 figures
Additional file 1: of Prognostic models for complete recovery in ischemic stroke: a systematic review and meta-analysis
Creators: name: Nampet Jampathong
name: Malinee Laopaiboon
name: Siwanon Rattanakanokchai
name: Porjai Pattanittum
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy

description: The databases and search strategies use in the systematic review. (PDF 134Â kb)
Additional file 5: Figure S4. of Co-circulation of different A. phagocytophilum variants within cattle herds and possible reservoir role for cattle
Creators: name: Anne-Claire Lagrée
name: Rouxel, Clotilde
name: Maëllys Kevin
name: Dugat, Thibaud
name: Girault, Guillaume
name: Durand, Benoît
name: Pfeffer, Martin
name: Silaghi, Cornelia
name: Nieder, Marion
name: Henri-Jean Boulouis
name: Haddad, Nadia
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: NJ tree obtained using the concatenation of typA, ctrA, msp4, and polA. Legends as in Fig. 1. (PDF 1434 kb)
GALACTICNUCLEUS: A high angular resolution $JHK_s$ imaging survey of the Galactic Centre. I. Methodology, performance, and near-infrared extinction towards the Galactic Centre
Creators: name: Nogueras-Lara, F.
name: Gallego-Calvente, A. T.
name: Dong, H.
name: Gallego-Cano, E.
name: Girard, J. H. V.
name: Hilker, M.
name: de Zeeuw, P. T.
name: Feldmeier-Krause, A.
name: Nishiyama, S.
name: Najarro, F.
name: Schödel, R.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: The Galactic Centre is of fundamental astrophysical interest, but existing near-infrared surveys fall short to cover it adequately. We introduce the GALACTICNUCLEUS survey, a $JHK_s$ imaging survey of the centre of the Milky Way with a $0.2"$ angular resolution. We present the observations of Field 1 of our survey, centred approximately on SgrA* with an approximate size of $7.95'\times3.43'$. We describe the observational set-up and data reduction pipeline and discuss the quality of the data. Finally, we present some preliminary analysis of the data. The data were acquired with the near-infrared camera HAWK-I at the ESO VLT. Short readout times in combination with the speckle holography algorithm allowed us to produce final images with a stable, Gaussian PSF of $0.2"$ FWHM. Astrometric calibration is achieved via the VVV survey and photometric calibration is based on the SIRIUS/IRSF survey. The quality of the data is assessed by comparison between observations of the same field with different detectors of HAWK-I and at different times. We reach 5 sigma detection limits of approximately $J=22$, $H=21$, and $K_s=20$. The photometric uncertainties are less than 0.05 at $J<20$, $H<17$ and $K_s<16$. We distinguish five stellar populations in the colour-magnitude diagrams; three of them appear to belong to foreground spiral arms, and the other two correspond to a high- and a low-extinction star groups at the Galactic Centre. We use our data to analyse the near-infrared extinction curve and conclude that it can be described very well by a power-law with an index of $JHK_s=2.30\pm0.08$. We do not find any evidence that this index depends on the position along the line-of-sight, or on the absolute value of the extinction. We produce extinction maps that show the clumpiness of the ISM at the Galactic Centre. Finally, we estimate that the majority of the stars have solar or super-solar metallicity.
description: Updated to the final version published in Astronomy & Astrophysics. 23 pages, 35 figures, 3 appendices
Additional file 1 of The immunomodulatory functions and molecular mechanism of a new bursal heptapeptide (BP7) in immune responses and immature B cells
Creators: name: Feng, Xiu Li
name: Zheng, Yang
name: Zong, Man Man
name: Hao, Shan Shan
name: Zhou, Guang Fang
name: Cao, Rui Bing
name: Chen, Pu Yan
name: Liu, Qing Tao
Publisher: name: figshare
Year: 2021
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 1. MS/MS analysis of the amino acid sequence of BP7. A) The parameters for MS/MS analysis of BP7. B) The MS/MS analysis information for BP7. C) Composition of seven amino acids.
Additional file 1 of Analysis of the geographic pattern of the police reports for domestic violence in Girona (Spain)
Creators: name: Serra, Laura
name: Vall-llosera, Laura
name: Varga, Diego
name: Saurina, Carme
name: Saez, Marc
name: Renart, Gemma
Publisher: name: figshare
Year: 2022
Subjects: subject: Sociology
subject: FOS: Sociology

description: Additional file 1: Supplementary Figure 1. Police reports of domestic violence in the census tracts of Girona per year (2012-2018).
Additional file 1: of Linc00659, a long noncoding RNA, acts as novel oncogene in regulating cancer cell growth in colorectal cancer
Creators: name: Kuo-Wang Tsai
name: Yi-Hao Lo
name: Liu, Hsuan
name: Chung-Yu Yeh
name: You-Zuo Chen
name: Chao-Wen Hsu
name: Wei-Shone Chen
name: Jui-Ho Wang
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Plant Biology

description: Figure S1. Knockdown of Linc00659 expression with siRNA suppressed growth of colon cancer cells (A)-(D) The expression levels of Linc00659 were examined after transfection of Lovo, LS174T, DLD-1 and SW620 with siRNA. (E)-(H) After transient transfection of Lovo, LS174T, DLD-1 and SW620 cells with si-Linc00659, cell proliferation was examined; the graph shows quantified values. (DOCX 124Â kb)
MOESM1 of The immunomodulatory functions and molecular mechanism of a new bursal heptapeptide (BP7) in immune responses and immature B cells
Creators: name: Feng, Xiu
name: Zheng, Yang
name: Zong, Man
name: Hao, Shan
name: Zhou, Guang
name: Cao, Rui
name: Chen, Pu
name: Liu, Tao
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Mental Health

description: Additional file 1. MS/MS analysis of the amino acid sequence of BP7. A) The parameters for MS/MS analysis of BP7. B) The MS/MS analysis information for BP7. C) Composition of seven amino acids.
MOESM3 of Metabolic engineering of the 2-ketobutyrate biosynthetic pathway for 1-propanol production in Saccharomyces cerevisiae
Creators: name: Nishimura, Yuya
name: Matsui, Terumi
name: Ishii, Jun
name: Kondo, Akihiko
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: Computational Biology

description: Additional file 3. Yeast strains used in Additional file 2.
Quantum coherences of indistinguishable particles
Creators: name: Sperling, Jan
name: Perez-Leija, Armando
name: Busch, Kurt
name: Walmsley, Ian A.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We study different notions of quantum correlations in multipartite systems of distinguishable and indistinguishable particles. Based on the definition of quantum coherence for a single particle, we consider two possible extensions of this concept to the many-particle scenario and determine the influence of the exchange symmetry. Moreover, we characterize the relation of multiparticle coherence to the entanglement of the compound quantum system. To support our general treatment with examples, we consider the quantum correlations of a collection of qudits. The impact of local and global quantum superpositions on the different forms of quantum correlations is discussed. For differently correlated states in the bipartite and multipartite scenarios, we provide a comprehensive characterization of the various forms and origins of quantum correlations.
" Сутканинг вақтига қараб пойтахтимиз ҳудудида  содир этилаётган ЙТҲларининг таҳлили"
Creators: name: Бахтиёр Рахмат , Озод Картимов
Publisher: name: Zenodo
Year: 2024

description: Аннотaция:      Республикaмизда, aйниқса пoйтaхтда трaнспорт воситалари оқимининг кескин ошиб бориши, содир этилаётган йўл-транспорт ҳодисаларининг кунинг қайси вақти  бўлишидан қатъий назар кескин равишда йўл-транспорт ҳоди-саларининг ошиб кетиши натижасида ҳайдовчилар ва йўловчиларнинг ҳалок бўлган ҳамда жароҳат олганлар сони ўсиши ҳамда уларнинг олдини олиш, камайтириш чора-тадбирлари ҳақида. Abstract:On the increase in the flow of vehicles in our country, especially in the city of Tashkent, the increase in the number of deaths and injuries of drivers and passengers as a result of a sharp increase in traffic accidents, regardless of the time of day, and measures to prevent and reduce them.Калит сўзлар: ҳаракатни нотўғри ташкил этиш, бахтсиз ҳодиса, сутка, кун, тун, вақт, йўлларнинг ҳолати, мавжуд инсфратузилма, авария ўчоқлари.Key words: improper Organization of movement, accident, Day, Night, Time, condition of roads, existing insfratuzilma, accident foci.
Is everything bigger in Texas? Introduction to Statistics with the Rock Pocket Mouse (Chaetodipus intermedius)
Creators: name: Schlichte, Julie
name: Lavretsky, Phillip
name: Zhuang, Vicky
Publisher: name: QUBES Educational Resources
Year: 2024

description: Natural history museums often contain large collections of the same species and therefore, are a resource for studying intraspecific variation. This module uses 172 images of rock pocket mouse skulls from the UTEP Biodiversity Collections to introduce students to collecting data from images and principles of basic statistics. This module resource focuses on immersing students into the development of study design, analysis, discussion, and communication without overwhelming them. Students enter their data into a Google sheet app that combines data entry, statistical analysis, and presentation all in one. The collaborative framework asks students to work together, share resources, and develop their own questions while learning the principles behind taking measurements from images of museum specimens.
Kinematics of OB-associations in Gaia epoch
Creators: name: Mel'nik, A. M.
name: Dambis, A. K.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We use stellar proper motions from the TGAS catalog to study the kinematics of OB-associations. The TGAS proper motions of OB-associations generally agree well with the Hipparcos proper motions. The parameters of the Galactic rotation curve obtained with TGAS and Hipparcos proper motions agree within the errors. The average one-dimensional velocity dispersion inside 18 OB-associations with more than 10 TGAS stars is sigma_v=3.9 km s-1, which is considerably smaller, by a factor of 0.4, than the velocity dispersions derived from Hipparcos data. The effective contribution from orbital motions of binary OB-stars into the velocity dispersion sigma_v inside OB-associations is sigma_b=1.2 km s-1. The median virial and stellar masses of OB-associations are equal to 7.1 10^5 and 9.0 10^3 Ms, respectively. Thus OB-associations must be unbound objects provided they do not include a lot of dense gas. The median star-formation efficiency is epsilon=2.1 percent. Nearly one third of stars of OB-associations must lie outside their tidal radius. We found that the Per OB1 and Car OB1 associations are expanding with the expansion started in a small region of 11--27 pc 7--10 Myr ago. The average expansion velocity is 6.3 km s-1.
description: 19 pages, 10 figures, accepted for publication in MNRAS
Additional file 2 of The immunomodulatory functions and molecular mechanism of a new bursal heptapeptide (BP7) in immune responses and immature B cells
Creators: name: Feng, Xiu Li
name: Zheng, Yang
name: Zong, Man Man
name: Hao, Shan Shan
name: Zhou, Guang Fang
name: Cao, Rui Bing
name: Chen, Pu Yan
name: Liu, Qing Tao
Publisher: name: figshare
Year: 2021
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 2. Quantitative real-time PCR primers for the six selected genes used in this study.
Additional file 1: of Prevalence and correlates of herbal medicine use among type 2 diabetic patients in Teaching Hospital in Ethiopia: a cross-sectional study
Creators: name: Abebe Mekuria
name: Sewunet Belachew
name: Henok Tegegn
name: Dawit Ali
name: Adeladlew Netere
name: Eskedar Lemlemu
name: Erku, Daniel
Publisher: name: figshare
Year: 2018
Subjects: subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy
subject: 60506 Virology

description: Questionnaire used for the study. (DOCX 21 kb)