cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Supplementary data . Zabana Y_ et al. 2019_6.docx
Creators: name: Manyé, Josep
name: Lorén, Violeta
name: Arce García-Jaraquemada
name: Yamile Zabana
name: Domènech, Eugeni
name: Cabré, Eduard
name: Mañosa, Miriam
name: Ferreiro, Miriam
name: Lozano, Juan Jose
name: Troya, José
name: Vicario, María
name: Adrià Aterido
name: Julià, Antonio
name: Maria-Rosa Sarrias
name: Pedrosa, Elisabet
Publisher: name: figshare
Year: 2020
Subjects: subject: 110307 Gastroenterology and Hepatology
subject: FOS: Clinical medicine

description: In this file there are data of methodology and results that complement the study titled: Transcriptomic identification of TMIGD1 and its relationship with the ileal epithelial cell differentiation in Crohn's disease ABSTRACT: Background: Crohn’s disease (CD) is a complex and multifactorial illness. There are still considerable gaps in our knowledge of its pathophysiology. A transcriptomic approach could shed some light on little-known biological alterations of the disease. Thus, we aimed to explore the ileum transcriptome to gain in knowledge about CD. Methods: We performed whole transcriptome gene expression analysis on ileocecal resections from CD patients and inflammatory bowel disease-free controls, as well as in a CD-independent cohort to replicate some selected results. Normalized data were hierarchically clustered, and gene ontology and molecular network were studied. Cell cultures and molecular methods were used for further evaluations. Results: Genome-wide expression data analysis identified a robust transmembrane immunoglobulin domain-containing 1 (TMIGD1) gene under-expression in CD tissue, which was even more marked in inflamed ileum. These changes in TMIGD1 expression were replicated independently. Immunofluorescence showed TMIGD1 to be located in the apical microvilli of well-differentiated enterocytes, but not in intestinal crypt. This apical TMIGD1 was lower in the non-inflamed tissue, and almost inexistent in the inflamed mucosa of surgical resections from patients. In vitro studies showed hypoxic-dependent TMIGD1 decreased expression in enterocyte-like cells. The gene enrichment analysis linked TMIGD1 with cell recovery and tissue remodelling in CD settings, involving guanylate cyclase activities Conclusions: transcriptomics can be useful to find new targets that allow us knowing more about CD and with potential diagnosis or prognosis. This is how TMIGD1 was identified in CD patients, relating it to multiciliate ileal epithelial cells differentiation.
Nylanderia guatemalensis
Creators: name: DE ALBUQUERQUE, EMÍLIA ZOPPAS
name: PRADO, LÍVIA PIRES DO
name: ANDRADE-SILVA, JOUDELLYS
name: DE SIQUEIRA, EMELY LAIARA SILVA
name: DA SILVA SAMPAIO, KELLY LIANE
name: ALVES, DIEGO
name: BRANDÃO, CARLOS ROBERTO FERREIRA
name: ANDRADE, PALOMA L.
name: FEITOSA, RODRIGO MACHADO
name: DE AZEVEDO KOCH, ELMO BORGES
name: DELABIE, JACQUES HUBERT CHARLES
name: FERNANDES, ITANNA
name: BACCARO, FABRÍCIO BEGGIATO
name: SOUZA, JORGE LUIZ PEREIRA
name: ALMEIDA, RONY PETERSON SANTOS
name: SILVA, ROGÉRIO R.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Nylanderia
Nylanderia guatemalensis

description: Nylanderia guatemalensis (Forel, 1885) *. Marituba [CPDC]; Moju [CPDC]; Novo Repartimento [CPDC].
 Nylanderia steinheili (Forel, 1893). Municipality unavailable [Kempf, 1972c; Brandão, 1991]; Almeirim [DZUP]; Chaves [Wheeler, 1915].
description: Published as part of DE ALBUQUERQUE, EMÍLIA ZOPPAS, PRADO, LÍVIA PIRES DO, ANDRADE-SILVA, JOUDELLYS, DE SIQUEIRA, EMELY LAIARA SILVA, DA SILVA SAMPAIO, KELLY LIANE, ALVES, DIEGO, BRANDÃO, CARLOS ROBERTO FERREIRA, ANDRADE, PALOMA L., FEITOSA, RODRIGO MACHADO, DE AZEVEDO KOCH, ELMO BORGES, DELABIE, JACQUES HUBERT CHARLES, FERNANDES, ITANNA, BACCARO, FABRÍCIO BEGGIATO, SOUZA, JORGE LUIZ PEREIRA, ALMEIDA, RONY PETERSON SANTOS & SILVA, ROGÉRIO R., 2021, Ants of the State of Pará, Brazil: a historical and comprehensive dataset of a key biodiversity hotspot in the Amazon Basin, pp. 1-83 in Zootaxa 5001 (1) on page 35, DOI: 10.11646/zootaxa.5001.1.1, http://zenodo.org/record/5122523
Paracapillaria (Paracapillaria) parophrysi
Creators: name: Arai, Hisao P.
name: Smith, John W.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Nematoda
Adenophorea
Trichocephalida
Capillariidae
Paracapillaria
Paracapillaria parophrysi

description: Paracapillaria (Paracapillaria) parophrysi (Moravec, Margolis & McDonald, 1981) Moravec, 1982
Synonym: Capillaria parophrysi Moravec, Margolis & McDonald, 1981
Description (after Moravec 2001). With characteristics of the genus.
Males: Body length 3.98–5.74, maximum width 0.051–0.069. Muscular oesophagus 0.147–0.255 long, stichosome 1.86–2.22, 30–35 stichocytes. Nerve ring 0.060–0.078 from anterior end. Spicule well sclerotized, smooth, 0.281–0.373 long (Fig. 22 B). Tail rounded, 0.009–0.014 long.
Females: Gravid worms 6.58–10.42 long, maximum width 0.056–0.093. Muscular oesophagus 0.138–0.235 long, stichosome 1.96–3.07, 33–35 stichocytes. Nerve ring 0.058–0.081 from anterior end. Vulva at level of oesophago-intestinal junction. Uterus with eggs in one row near vulva (Fig. 22 C), distally in two rows. Mature eggs 0.064–0.071 x 0.025–0.030, polar plugs distinctly protruding (Fig. 22 D). Ovary posteriorly reaching anterior
end of rectum. Rectum 0.081–0.113 long. Anus subterminal, tail 0.007–0.009 long.
Site: intestine
Hosts: Hippoglossus stenolepis (3, 4, 5); Parophrys vetulus (1, 2)
Distribution: Pacific
Records: 1. Margolis 1952; 2. Moravec et al. 1981; 3. Blaycock 1996; 4. Blaycock et al. 1998a; 5. Blaycock et al. 1998b
description: Published as part of Arai, Hisao P. & Smith, John W., 2016, Guide to the Parasites of Fishes of Canada Part V: Nematoda, pp. 1-274 in Zootaxa 4185 (1) on pages 28-29, DOI: 10.11646/zootaxa.4185.1.1, http://zenodo.org/record/165530
Toll-Like Receptor-4 Is Involved in Mediating Intestinal and Extra-Intestinal Inflammation in Campylobacter coli-Infected Secondary Abiotic IL-10−/− Mice
Creators: name: Kløve, Sigri
name: Genger, Claudia
name: Weschka, Dennis
name: Mousavi, Soraya
name: Bereswill, Stefan
name: Heimesaat, Markus M.
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: Toll-like receptor-4
subject: lipooligosaccharide
subject: Campylobacter coli
subject: campylobacteriosis model
subject: host-pathogen interaction
subject: secondary abiotic IL-10−/− mice
subject: pro-inflammatory immune responses
subject: intestinal immunopathology
subject: extra-intestinal immune responses
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Human Campylobacter infections are emerging worldwide and constitute significant health burdens. We recently showed that the immunopathological sequelae in Campylobacter jejuni-infected mice were due to Toll-like receptor (TLR)-4 dependent immune responses induced by bacterial lipooligosaccharide (LOS). Information regarding the molecular mechanisms underlying Campylobacter coli-host interactions are scarce, however. Therefore, we analyzed C. coli-induced campylobacteriosis in secondary abiotic IL-10-/- mice with and without TLR4. Mice were infected perorally with a human C. coli isolate or with a murine commensal Escherichia coli as apathogenic, non-invasive control. Independent from TLR4, C. coli and E. coli stably colonized the gastrointestinal tract, but only C. coli induced clinical signs of campylobacteriosis. TLR4-/- IL-10-/- mice, however, displayed less frequently fecal blood and less distinct histopathological and apoptotic sequelae in the colon versus IL-10-/- counterparts on day 28 following C. coli infection. Furthermore, C. coli-induced colonic immune cell responses were less pronounced in TLR4-/- IL-10-/- as compared to IL-10-/- mice and accompanied by lower pro-inflammatory mediator concentrations in the intestines and the liver of the former versus the latter. In conclusion, our study provides evidence that TLR4 is involved in mediating C. coli-LOS-induced immune responses in intestinal and extra-intestinal compartments during murine campylobacteriosis.
Potential drug-drug interactions in patients with indication for prophylactic implantation of a cardioverter defibrillator: a cross-sectional analysis
Creators: name: Dornquast, Christina
name: Dombrowski, Mirja
name: Zabel, Markus
name: Willich, Stefan N.
name: Reinhold, Thomas
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: Drug-drug interaction
subject: Drug use
subject: Polypharmacy
subject: Prescribing patterns
subject: Implantable defibrillator
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Background: Due to demographic transition, multimorbidity and high numbers of medicinal products, polypharmacy rates will presumably further increase. This could lead to higher risks of potentially inappropriate medications with potential drug-drug interactions (PDDI). PDDI has already been investigated by several studies, but not for patients with indication for prophylactic implantation of a cardioverter defibrillator (ICD). Thus, the objective of this analysis was to examine the frequency of PDDI in that specific group of patients and compare patients with or without PDDI regarding potential underlying factors. Methods: Cross-sectional data analyses were performed using data of the prospective EU-CERT-ICD study that primarily aimed to assess ICD effectiveness in Europe. Self-reported baseline medication data of patients from Germany and Switzerland were used. Patients who reported to take at least two drugs simultaneously for at least 80 days were defined as population at risk. By means of a publicly available interaction checker, we analyzed the medication data regarding occurrence and characteristics of PDDI categorized as minor, moderate, and major PDDI. The analyses were done using descriptive methods and chi square testing. Results: The total population (n = 524) and the population at risk (n = 383) were rather similar with an average age of 64 years and about 80% male. PDDIs were found for 296 patients (in 57% of total population vs. 77% of population at risk). The moderate PDDI category was most frequently with 268 affected patients. Comparing patients with and without any PDDI, the proportion of patients with place of residence in Germany varied distinctly (93% vs. 78%). The frequency of any PDDI for the total population was twice as high in Germany as in Switzerland (p value < 0.001). Conclusions: PDDIs were frequently observed in this selected patient population and differed markedly between German and Swiss patients. The results should lead to higher awareness of polypharmacy and PDDIs. Adequate cooperation between health care providers should be promoted and new technologies such as drug interaction information systems or digital patient files used. Trial registration: The EU-CERT-ICD study is registered at www.clinicaltrials.gov (NCT02064192).
On the master equation approach to diffusive grain-surface chemistry: the H, O, CO system
Creators: name: Stantcheva, T.
name: Shematovich, V. I.
name: Herbst, E.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We have used the master equation approach to study a moderately complex network of diffusive reactions occurring on the surfaces of interstellar dust particles. This network is meant to apply to dense clouds in which a large portion of the gas-phase carbon has already been converted to carbon monoxide. Hydrogen atoms, oxygen atoms, and CO molecules are allowed to accrete onto dust particles and their chemistry is followed. The stable molecules produced are oxygen, hydrogen, water, carbon dioxide (CO2), formaldehyde (H2CO), and methanol (CH3OH). The surface abundances calculated via the master equation approach are in good agreement with those obtained via a Monte Carlo method but can differ considerably from those obtained with standard rate equations.
description: 13 pages, 5 figures
Additional file 7: of Selective translational usage of TSS and core promoters revealed by translatome sequencing
Creators: name: Li, Hua
name: Bai, Ling
name: Li, Hongmei
name: Li, Xinhui
name: Kang, Yani
name: Zhang, Ningbo
name: Sun, Jielin
name: Shao, Zhifeng
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Virology

description: Calculation of TC fold change (FC) with polysome-free RNA instead of total RNA. (DOCX 13 kb)
On the upper semicontinuity of the Wu metric
Creators: name: Jarnicki, Marek
name: Pflug, Peter
Publisher: name: arXiv
Year: 2003
Subjects: subject: Complex Variables (math.CV)
subject: FOS: Mathematics
subject: 32F45

description: We discuss continuity and upper semicontinuity of the Wu pseudometric.
description: 5 pages
Daily observations from the Radcliffe Observatory, Oxford, England for the period 1881 to 1935, in annual volumes collected in five-year or decadal sets. Scanned or photographed pages from the Radcliffe Observatory 'Results' volumes: OCR's PDFs. Warning - some files are *very large*
Creators: name: Burt, Stephen
Publisher: name: figshare
Year: 2020
Subjects: subject: 40105 Climatology (excl. Climate Change Processes)
subject: FOS: Earth and related environmental sciences

description: Annual summaries (in 5 year or decadal collections) of daily meteorological data from the Radcliffe Observatory, Oxford, England.
Scanned or photographed pages - many from existing library collections, whose assistance is gratefully acknowledged.
Dual Convolutional LSTM Network for Referring Image Segmentation
Creators: name: Ye, Linwei
name: Liu, Zhi
name: Wang, Yang
Publisher: name: arXiv
Year: 2020
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: We consider referring image segmentation. It is a problem at the intersection of computer vision and natural language understanding. Given an input image and a referring expression in the form of a natural language sentence, the goal is to segment the object of interest in the image referred by the linguistic query. To this end, we propose a dual convolutional LSTM (ConvLSTM) network to tackle this problem. Our model consists of an encoder network and a decoder network, where ConvLSTM is used in both encoder and decoder networks to capture spatial and sequential information. The encoder network extracts visual and linguistic features for each word in the expression sentence, and adopts an attention mechanism to focus on words that are more informative in the multimodal interaction. The decoder network integrates the features generated by the encoder network at multiple levels as its input and produces the final precise segmentation mask. Experimental results on four challenging datasets demonstrate that the proposed network achieves superior segmentation performance compared with other state-of-the-art methods.
description: 12 pages, accepted for publication in IEEE Transactions on Multimedia
Prostanoid Receptor Subtypes and Its Endogenous Ligands with Processing Enzymes within Various Types of Inflammatory Joint Diseases
Creators: name: Al-Madol, Mohammed A.
name: Shaqura, Mohammed
name: John, Thilo
name: Likar, Rudolf
name: Ebied, Reham Said
name: Salih, Magdi M.
name: Treskatsch, Sascha
name: Schäfer, Michael
name: Mousa, Shaaban A.
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: Enzyme
subject: Inflammatory Joint Diseases
subject: Arthritis
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: A complex inflammatory process mediated by proinflammatory cytokines and prostaglandins commonly occurs in the synovial tissue of patients with joint trauma (JT), osteoarthritis (OA), and rheumatoid arthritis (RA). This study systematically investigated the distinct expression profile of prostaglandin E2 (PGE2), its processing enzymes (COX-2), and microsomal PGES-1 (mPGES-1) as well as the corresponding prostanoid receptor subtypes (EP1-4) in representative samples of synovial tissue from these patients (JT, OA, and RA). Quantitative TaqMan®-PCR and double immunofluorescence confocal microscopy of synovial tissue determined the abundance and exact immune cell types expressing these target molecules. Our results demonstrated that PGE2 and its processing enzymes COX-2 and mPGES-1 were highest in the synovial tissue of RA, followed by the synovial tissue of OA and JT patients. Corresponding prostanoid receptor, subtypes EP3 were highly expressed in the synovium of RA, followed by the synovial tissue of OA and JT patients. These proinflammatory target molecules were distinctly identified in JT patients mostly in synovial granulocytes, in OA patients predominantly in synovial macrophages and fibroblasts, whereas in RA patients mainly in synovial fibroblasts and plasma cells. Our findings show a distinct expression profile of EP receptor subtypes and PGE2 as well as the corresponding processing enzymes in human synovium that modulate the inflammatory process in JT, OA, and RA patients.
Paratrechina Motschoulsky 1863
Creators: name: DE ALBUQUERQUE, EMÍLIA ZOPPAS
name: PRADO, LÍVIA PIRES DO
name: ANDRADE-SILVA, JOUDELLYS
name: DE SIQUEIRA, EMELY LAIARA SILVA
name: DA SILVA SAMPAIO, KELLY LIANE
name: ALVES, DIEGO
name: BRANDÃO, CARLOS ROBERTO FERREIRA
name: ANDRADE, PALOMA L.
name: FEITOSA, RODRIGO MACHADO
name: DE AZEVEDO KOCH, ELMO BORGES
name: DELABIE, JACQUES HUBERT CHARLES
name: FERNANDES, ITANNA
name: BACCARO, FABRÍCIO BEGGIATO
name: SOUZA, JORGE LUIZ PEREIRA
name: ALMEIDA, RONY PETERSON SANTOS
name: SILVA, ROGÉRIO R.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Paratrechina

description: Paratrechina Motschoulsky, 1863
 Paratrechina longicornis (Latreille, 1802) (Exotic). Municipality unavailable [Kempf, 1972c]; Goianésia do Pará [CPDC]; Maracanã [INPA]; Moju [CPDC]; Oriximiná [CPDC]; Paragominas [CPDC; Solar et al., 2016b]; Portel [Harada, 2016]; Santarém [Mann, 1916].
description: Published as part of DE ALBUQUERQUE, EMÍLIA ZOPPAS, PRADO, LÍVIA PIRES DO, ANDRADE-SILVA, JOUDELLYS, DE SIQUEIRA, EMELY LAIARA SILVA, DA SILVA SAMPAIO, KELLY LIANE, ALVES, DIEGO, BRANDÃO, CARLOS ROBERTO FERREIRA, ANDRADE, PALOMA L., FEITOSA, RODRIGO MACHADO, DE AZEVEDO KOCH, ELMO BORGES, DELABIE, JACQUES HUBERT CHARLES, FERNANDES, ITANNA, BACCARO, FABRÍCIO BEGGIATO, SOUZA, JORGE LUIZ PEREIRA, ALMEIDA, RONY PETERSON SANTOS & SILVA, ROGÉRIO R., 2021, Ants of the State of Pará, Brazil: a historical and comprehensive dataset of a key biodiversity hotspot in the Amazon Basin, pp. 1-83 in Zootaxa 5001 (1) on page 35, DOI: 10.11646/zootaxa.5001.1.1, http://zenodo.org/record/5122523
Circadian Dysregulation of the TGFβ/SMAD4 Pathway Modulates Metastatic Properties and Cell Fate Decisions in Pancreatic Cancer Cells
Creators: name: Li, Yin
name: Basti, Alireza
name: Yalçin, Müge
name: Relógio, Angela
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: Cancer
subject: Cell Biology
subject: Chronobiology
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Impairment of circadian rhythms impacts carcinogenesis. SMAD4, a clock-controlled gene and central component of the TGFβ canonical pathway, is frequently mutated in pancreatic ductal adenocarcinoma (PDA), leading to decreased survival. Here, we used an in vitro PDA model of SMAD4-positive and SMAD4-negative cells to investigate the interplay between circadian rhythms, the TGFβ canonical signaling pathway, and its impact on tumor malignancy. Our data show that TGFβ1, SMAD3, SMAD4, and SMAD7 oscillate in a circadian fashion in SMAD4-positive PDA cells, whereas altering the clock impairs the mRNA dynamics of these genes. Furthermore, the expression of the clock genes DEC1, DEC2, and CRY1 varied depending on SMAD4 status. TGFβ pathway activation resulted in an altered clock, cell-cycle arrest, accelerated apoptosis rate, enhanced invasiveness, and chemosensitivity. Our data suggest that the impact of TGFβ on the clock is SMAD4-dependent, and S MAD3, SMAD4, DEC1, and CRY1 involved in this cross-talk affect PDA patient survival.
Pointed Admissible G-Covers and G-equivariant Cohomological Field Theories
Creators: name: Jarvis, Tyler J.
name: Kaufmann, Ralph
name: Kimura, Takashi
Publisher: name: arXiv
Year: 2003
Subjects: subject: Algebraic Geometry (math.AG)
subject: Differential Geometry (math.DG)
subject: Quantum Algebra (math.QA)
subject: FOS: Mathematics
subject: 14N35, 53D45

description: For any finite group G we define the moduli space of pointed admissible G-covers and the concept of a G-equivariant cohomological field theory (G-CohFT), which, when G is the trivial group, reduce to the moduli space of stable curves and a cohomological field theory (CohFT), respectively. We prove that by taking the "quotient" by G, a G-CohFT reduces to a CohFT. We also prove that a G-CohFT contains a G-Frobenius algebra, a G-equivariant generalization of a Frobenius algebra, and that the "quotient" by G agrees with the obvious Frobenius algebra structure on the space of G-invariants, after rescaling the metric. We also introduce the moduli space of G-stable maps into a smooth, projective variety X with G action. Gromov-Witten-like invariants of these spaces provide the primary source of examples of G-CohFTs. Finally, we explain how these constructions generalize (and unify) the Chen-Ruan orbifold Gromov-Witten invariants of the global quotient [X/G] as well as the ring H*(X,G) of Fantechi and Goettsche.
description: Corrected proof of the trace axiom and made minor typo corrections. 13 figures. Uses Paul Taylor's diagrams package
title: Candidature projet La maison fortifiée en Méditerranée orientale 2013
Creators: name: TELEMME (UMR 7303)/IREMAM (UMR 7310)/LA3M (UMR 7298)
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2019

description: Projet La maison fortifiée en Méditerranée orientale, porté par Lucien Faggion (TELEMME), Michel Balivet (IREMAM), Nicolas Fauchere (LA3M), en 2013
1881-1890 Oxford Radcliffe Observatory Meteorological Results OCR.pdf
Creators: name: Burt, Stephen
Publisher: name: figshare
Year: 2020
Subjects: subject: 40105 Climatology (excl. Climate Change Processes)
subject: FOS: Earth and related environmental sciences

description: Annual summaries (in 5 year or decadal collections) of daily meteorological data from the Radcliffe Observatory, Oxford, England.
Scanned or photographed pages - many from existing library collections, whose assistance is gratefully acknowledged.
Additional file 7: of Associations between superoxide dismutase, malondialdehyde and all-cause mortality in older adults: a community-based cohort study
Creators: name: Mao, Chen
name: Yuan, Jin-Qiu
name: Lv, Yue-Bin
name: Gao, Xiang
name: Yin, Zhao-Xue
name: Kraus, Virginia
name: Luo, Jie-Si
name: Chei, Choy-Lye
name: Matchar, David
name: Zeng, Yi
name: Shi, Xiao-Ming
Publisher: name: figshare
Year: 2019
Subjects: subject: Chemical Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Science Policy

description: Table S4. Sensitivity analyses for the association between malondialdehyde and all-cause mortality (DOCX 29 kb)
Pseudocapillaria Freitas 1959
Creators: name: Arai, Hisao P.
name: Smith, John W.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Nematoda
Adenophorea
Trichocephalida
Capillariidae
Pseudocapillaria

description: Pseudocapillaria Freitas, 1959
Generic diagnosis (after Moravec 2001). Capillariidae. Two lateral bacillary bands extending most of body length (Fig. 23 A). Stichosome comprises one row of stichocytes. Males lack lateral caudal alae. Male tail rounded with two large spherical subventral lobes behind cloacal opening. Dorsal cuticular membrane (bursa) reduced or absent. Spicular surface lacks rough transverse grooves. Spicular sheath non-spiny. Vulvar appendage present or absent.
description: Published as part of Arai, Hisao P. & Smith, John W., 2016, Guide to the Parasites of Fishes of Canada Part V: Nematoda, pp. 1-274 in Zootaxa 4185 (1) on page 30, DOI: 10.11646/zootaxa.4185.1.1, http://zenodo.org/record/165530
The ILC as a natural SUSY discovery machine and precision microscope: from light higgsinos to tests of unification
Creators: name: Baer, Howard
name: Berggren, Mikael
name: Fujii, Keisuke
name: List, Jenny
name: Lehtinen, Suvi-Leena
name: Tanabe, Tomohiko
name: Yan, Jacqueline
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The requirement of electroweak naturalness in simple supersymmetric models implies the existence of a cluster of four light higgsinos with mass $\sim 100-300$\,GeV, the lighter the better. While such light compressed spectra may be challenging to observe at LHC, the International Linear $e^+e^-$ Collider (ILC) with $\sqrt{s}>2m_{\rm higgsino}$ would serve as both a SUSY discovery machine and a precision microscope. We study higgsino pair production signatures at the ILC based on full, \texttt{Geant4-}based simulation of the ILD detector concept. We examine several benchmark scenarios that may be challenging for discovery at HL-LHC due to mass differences between the higgsino states between $20$ and $4$\,GeV. Assuming $\sqrt{s}= 500$\,GeV and 1000\,fb$^{-1}$ of integrated luminosity, the individual higgsino masses can be measured to $1-2\%$ precision in case of the larger mass differences, and at the level of $5\%$ for the smallest mass difference case. The higgsino mass splittings are sensitive to the electroweak gaugino masses and allow extraction of gaugino masses to $\sim 3-20\%$ (depending on the model). Extrapolation of gaugino masses via renormalization group running can test the hypothesis of gaugino mass unification. We also examine a case with natural generalized mirage mediation where the unification of gaugino masses at an intermediate scale apparently gives rise to a natural SUSY spectrum somewhat beyond the reach of HL-LHC.
description: 43 pages, 33 figures
Acanthognathus Mayr 1887
Creators: name: DE ALBUQUERQUE, EMÍLIA ZOPPAS
name: PRADO, LÍVIA PIRES DO
name: ANDRADE-SILVA, JOUDELLYS
name: DE SIQUEIRA, EMELY LAIARA SILVA
name: DA SILVA SAMPAIO, KELLY LIANE
name: ALVES, DIEGO
name: BRANDÃO, CARLOS ROBERTO FERREIRA
name: ANDRADE, PALOMA L.
name: FEITOSA, RODRIGO MACHADO
name: DE AZEVEDO KOCH, ELMO BORGES
name: DELABIE, JACQUES HUBERT CHARLES
name: FERNANDES, ITANNA
name: BACCARO, FABRÍCIO BEGGIATO
name: SOUZA, JORGE LUIZ PEREIRA
name: ALMEIDA, RONY PETERSON SANTOS
name: SILVA, ROGÉRIO R.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Acanthognathus

description: Acanthognathus Mayr, 1887
 Acanthognathus brevicornis Smith, 1944. Municipality unavailable [Kempf, 1972c]; Belém [Brown Jr. & Kempf, 1969]; Marituba [CPDC].
 Acanthognathus ocellatus Mayr, 1887. Municipality unavailable [Kempf, 1972c]; Belém [Brown Jr. & Kempf, 1969; Kempf, 1975b]; Curionópolis [MPEG].
description: Published as part of DE ALBUQUERQUE, EMÍLIA ZOPPAS, PRADO, LÍVIA PIRES DO, ANDRADE-SILVA, JOUDELLYS, DE SIQUEIRA, EMELY LAIARA SILVA, DA SILVA SAMPAIO, KELLY LIANE, ALVES, DIEGO, BRANDÃO, CARLOS ROBERTO FERREIRA, ANDRADE, PALOMA L., FEITOSA, RODRIGO MACHADO, DE AZEVEDO KOCH, ELMO BORGES, DELABIE, JACQUES HUBERT CHARLES, FERNANDES, ITANNA, BACCARO, FABRÍCIO BEGGIATO, SOUZA, JORGE LUIZ PEREIRA, ALMEIDA, RONY PETERSON SANTOS & SILVA, ROGÉRIO R., 2021, Ants of the State of Pará, Brazil: a historical and comprehensive dataset of a key biodiversity hotspot in the Amazon Basin, pp. 1-83 in Zootaxa 5001 (1) on page 36, DOI: 10.11646/zootaxa.5001.1.1, http://zenodo.org/record/5122523
Dilated cardiomyopathy impairs mitochondrial biogenesis and promotes inflammation in an age- and sex-dependent manner
Creators: name: Barcena, Maria Luisa
name: Pozdniakova, Sofya
name: Haritonow, Natalie
name: Breiter, Pavelas
name: Kühl, Anja A.
name: Milting, Hendrik
name: Baczko, Istvan
name: Ladilov, Yury
name: Regitz-Zagrosek, Vera
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: dilated cardiomyopathy
subject: inflammation
subject: mitochondrial proteins
subject: sex differences
subject: aging
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Dilated cardiomyopathy (DCM) belongs to the myocardial diseases associated with a severe impairment of cardiac function, but the question of how sex and age affect this pathology has not been fully explored. Impaired energy homeostasis, mitochondrial dysfunction, and systemic inflammation are well-described phenomena associated with aging. In this study, we investigated if DCM affects these phenomena in a sex- and age-related manner. We analyzed the expression of mitochondrial and antioxidant proteins and the inflammatory state in DCM heart tissue from younger and older women and men. A significant downregulation of Sirt1 expression was detected in older DCM patients. Sex-related differences were observed in the phosphorylation of AMPK that only appeared in older males with DCM, possibly due to an alternative Sirt1 regulation mechanism. Furthermore, reduced expression of several mitochondrial proteins (TOM40, TIM23, Sirt3, and SOD2) and genes (cox1, nd4) was only detected in old DCM patients, suggesting that age has a greater effect than DCM on these alterations. Finally, an increased expression of inflammatory markers in older, failing hearts, with a stronger pro-inflammatory response in men, was observed. Together, these findings indicate that age- and sex-related increased inflammation and disturbance of mitochondrial homeostasis occurs in male individuals with DCM.
Fundamental Parameters of $\sim$30,000 M dwarfs in LAMOST DR1 Using Data-driven Spectral Modeling
Creators: name: Galgano, Brianna
name: Stassun, Keivan
name: Rojas-Ayala, Barbara
Publisher: name: arXiv
Year: 2019
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: M dwarfs are the most common type of star in the Galaxy, and because of their small size are favored targets for searches of Earth-sized transiting exoplanets. Current and upcoming all-sky spectroscopic surveys, such as the Large Sky Area Multi-Object Fiber Spectroscopic Telescope (LAMOST), offer an opportunity to systematically determine physical properties of many more M dwarfs than has been previously possible. Here we present new effective temperatures, radii, masses, and luminosities for 29,678 M dwarfs with spectral types M0-M6 in the first data release (DR1) of LAMOST. We derived these parameters from the supervised machine learning code, The Cannon, trained with 1,388 M dwarfs in the Transiting Exoplanet Survey Satellite (TESS) Cool Dwarf Catalog that were also present in LAMOST with high signal-to-noise ratio ($>$250) spectra. Our validation tests show that the output parameter uncertainties are strongly correlated with the signal-to-noise of the LAMOST spectra, and we achieve typical uncertainties of 110 K in Teff ($\sim$3%), 0.065 $R_{\odot}$ ($\sim$14%) in radius, 0.054 $M_{\odot}$ ($\sim$12%) in mass, and 0.012 $L_{\odot}$ ($\sim$20%) in luminosity. The model presented here can be rapidly applied to future LAMOST data releases, significantly extending the samples of well-characterized M dwarfs across the sky using new and exclusively data-based modeling methods.
The Effects of Targeted Temperature Management on Oxygen-Glucose Deprivation/Reperfusion-Induced Injury and DAMP Release in Murine Primary Cardiomyocytes
Creators: name: Tong, Giang
name: Lam, Phuong D.
name: Brey, Franka
name: Krech, Jana
name: Wowro, Sylvia J.
name: Garlen, Nalina N. A. Von
name: Berger, Felix
name: Schmitt, Katharina R. L.
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: Murine Primary Cardiomyocytes
subject: Targeted Temperature Management
subject: Ischemia/Reperfusion (I/R)
subject: DAMP Release
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Introduction. Ischemia/Reperfusion (I/R) is a primary cause of myocardial injury after acute myocardial infarction resulting in the release of damage-associated molecular patterns (DAMPs), which can induce a sterile inflammatory response in the myocardial penumbra. Targeted temperature management (TTM) after I/R has been established for neuroprotection, but the cardioprotective effect remains to be elucidated. Therefore, we investigated the effect of TTM on cell viability, immune response, and DAMP release during oxygen-glucose deprivation/reperfusion (OGD/R) in murine primary cardiomyocytes. Methods. Primary cardiomyocytes from P1-3 mice were exposed to 2, 4, or 6 hours OGD (0.2% oxygen in medium without glucose and serum) followed by 6, 12, or 24 hours simulated reperfusion (21% oxygen in complete medium). TTM at 33.5°C was initiated intra-OGD, and a control group was maintained at 37°C normoxia. Necrosis was assessed by lactate dehydrogenase (LDH) release and apoptosis by caspase-3 activation. OGD-induced DAMP secretions were assessed by Western blotting. Inducible nitric oxide synthase (iNOS), cytokines, and antiapoptotic RBM3 and CIRBP gene expressions were measured by quantitative polymerase chain reaction. Results. Increasing duration of OGD resulted in a transition from apoptotic programmed cell death to necrosis, as observed by decreasing caspase-3 cleavage and increasing LDH release. DAMP release and iNOS expression correlated with increasing necrosis and were effectively attenuated by TTM initiated during OGD. Moreover, TTM induced expression of antiapoptotic RBM3 and CIRBP. Conclusion. TTM protects the myocardium by attenuating cardiomyocyte necrosis induced by OGD and caspase-3 activation, possibly via induction of antiapoptotic RBM3 and CIRBP expressions, during reperfusion. OGD induces increased Hsp70 and CIRBP releases, but HMGB-1 is the dominant mediator of inflammation secreted by cardiomyocytes after prolonged exposure. TTM has the potential to attenuate DAMP release.
Spectral Energy Distribution in Supercritical Disk Accretion Flows through Photon-trapping Effects
Creators: name: Ohsuga, K.
name: Mineshige, S.
name: Watarai, K.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We investigate the spectral energy distribution (SED) of the supercritical disk accretion flows around black holes by solving the multi-frequency zeroth moment equation of the radiation transfer equation under the flux-limited diffusion approximation as well as the energy equation of gas. Special attention is paid to the photon-trapping effects, the effects that photons are trapped within accretion flow and are swallowed by a black hole, with little being radiated away. It is found that when flow luminosity is below about twice the Eddington luminosity (L<2L_E) photon trapping is ineffective and the SED shifts to the higher-energy side as L increases. The peak frequency at which the SED reaches its peak becomes at maximum three times higher than that given by the standard-disk model, which might resolve the so-called 'too hot accretion disk problem.' When L>2L_E, in contrast the peak frequency of the SED tends to decrease with increase of mass-accretion rate. This is due to enhanced photon-trapping. Since high-energy photons are generated near the equatorial plane, they can be more effectively trapped in flow than low-energy ones and, hence, the high energy part of radiation is suppressed. Finally, the observed time variation of IC 342 S1, which is an ultraluminous X-ray source, in the X-ray HR diagram can be explained by the modulation of the mass accretion rate. In comparison with the observational data, we estimate the mass of black hole in IC 342 S1 is around 100 solar mass.
description: 8 pages, 7 figures, accepted for publication in ApJ (Volume 596, October 10, 2003 issue)
Is time running out? The urgent need for appropriate global health curricula in Germany
Creators: name: Schuster, Angela
name: Anton, Nora
name: Grosse, Pascal
name: Heintze, Christoph
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: Global Health
subject: Germany
subject: Local Health
subject: health education and promotion
subject: health policy
subject: public health
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Recently, representatives of politics, health officials and academia in Germany have advocated a greater role for Germany in matters concerning global health. However, health professionals in Germany are rarely taught about global health topics and accordingly real expertise in this field is lacking. To advance knowledge and competencies at German universities and adequately equip health professionals to achieve Germany’s political goals, global health curricula must be developed at medical schools and other institutions. Such ambitions raise questions about the required content and dimensions of global health curricula as the field is currently highly heterogeneous and ill defined. To systematically identify strengths and shortcomings of current curricula, we scrutinised the global health curriculum at our institution, Charité—Universitätsmedizin Berlin, using an analytical framework that integrates the various approaches of global health. Our analysis identified that four (technical, social justice, security and humanitarian) of five approaches are present in our core global health curriculum. Local and global aspects of the field are equally represented. We propose that the use of such a structured analytical framework can support the development of GH curricula for all health professionals—in Germany and elsewhere. But it can also help to evaluate existing curricula like ours at Charité. This framework has the potential to support the design of comprehensive GH trainings, serving German aspirations in politics and academia to promote health worldwide.
Pseudocapillaria
Creators: name: Arai, Hisao P.
name: Smith, John W.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Nematoda
Adenophorea
Trichocephalida
Capillariidae
Pseudocapillaria

description: Key to the species of Pseudocapillaria from Canadian fresh-water fishes
1 Male tail with short dorsal caudal bursa connecting subventral lobes..................... P. (Ichthyocapillaria) salvelini
- Male tail lacking caudal bursa connecting subventral lobes............................ P. (Pseudocapillaria) tomentosa
description: Published as part of Arai, Hisao P. & Smith, John W., 2016, Guide to the Parasites of Fishes of Canada Part V: Nematoda, pp. 1-274 in Zootaxa 4185 (1) on page 31, DOI: 10.11646/zootaxa.4185.1.1, http://zenodo.org/record/165530
Quantity and quality of conflict of interest policies at German medical schools - a cross sectional study and survey
Creators: name: Grabitz, Peter
name: Friedmann, Zoe
name: Gepp, Sophie
name: Hess, Leonard
name: Specht, Lisa
name: Struck, Maja
name: Tragert, Sophie Kira
name: Walther, Tobias
name: Klemperer, David
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: German medical schools
subject: conflict of interest policies
subject: survey
subject: health policy
subject: medical education & training
subject: medical ethics
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Objectives: To assess the quantity and evaluate the quality of policies and curricula focusing on conflicts of interests (COI) at medical schools across Germany. Design: Cross-sectional study, survey of medical schools, standardised web search. Setting: Medical schools, Germany. Participants: 38 German medical schools. Interventions: We collected relevant COI policies, including teaching activities, by conducting a search of the websites of all 38 German medical schools using standardised keywords for COI policies and teaching. Further, we surveyed all medical schools’ dean’s offices. Finally, we adapted a scoring system for results we obtained with 13 categories based on prior similar studies. Main outcomes and measures: Presence or absence of COI-related policies, including teaching activities at medical school. The secondary outcome was the achieved score on a scale from 0 to 26, with high scores representing restrictive policies and sufficient teaching activities. Results: We identified relevant policies for one medical school via the web search. The response rate of the deans’ survey was 16 of 38 (42.1%). In total, we identified COI-related policies for 2 of 38 (5.3%) German medical schools, yet no policy was sufficient to address all COI-related categories that were assessed in this study. The maximum score achieved was 12 of 26. 36 (94.7%) schools scored 0. No medical school reported curricular teaching on COI. Conclusions: Our results indicate a low level of action by medical schools to protect students from undue commercial influence. No participating dean was aware of any curriculum or instruction on COI at the respective school and only two schools had policies in place. The German Medical Students Association and international counterparts have called for a stronger focus on COI in the classroom. We conclude that for German medical schools, there is still a long way to go.
Grassmann Electrodynamics and General Relativity
Creators: name: Kochan, Denis
Publisher: name: arXiv
Year: 2003
Subjects: subject: Differential Geometry (math.DG)
subject: Mathematical Physics (math-ph)
subject: FOS: Mathematics
subject: FOS: Physical sciences
subject: 58A10; 58A50; 32C81

description: The aim of this paper is to present a short introduction to supergeometry on pure odd supermanifolds. (Pseudo)differential forms, Cartan calculus (DeRham differential, Lie derivative, "inner" product), metric, inner product, Killing's vector fields, Hodge star operator, integral forms, co-differential and connection on odd Riemannian supermanifolds are introduced. The electrodynamics and Einstein relativity with anti-commuting variables only are formulated modifying the geometry beyond classical (even, bosonic) theories appropriately. Extension of these ideas to general supermanifolds is straightforward. All this "odd business" (in both meanings of the word "odd") is based on classical geometrical analogy.
description: 16 pages. submitted to Journal of Geometry and Physics
Isolated Femoral Shaft Fracture in Wakeboarding and Review of the Literature
Creators: name: Bäcker, Henrik Constantin
name: Shoap, Seth
name: Vasarhelyi, Gabor
name: Pánics, Gergely
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: Isolated Femoral Shaft Fracture
subject: Wakeboarding
subject: Literature Review
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Introduction. Wakeboarding is an extreme sport that has shown increasing popularity in recent years, with an estimated 2.9 million participants in 2017. Due to this trend, injuries related to this sport are likely to become more common. Isolated femoral shaft are rare; however, they occur much more frequently in youth as a result of high velocity events, such as dashboard-related injuries. Few studies have addressed injuries related to wakeboarding, and of those that have, most have reported on muscle injuries, ligament ruptures, and sprains. Due to the dearth in literature, we want to present two cases of isolated noncontact femoral shaft fractures that resulted from wakeboarding. Case Presentation. Two 28-year-old, otherwise healthy, wakeboarders—patient A, male, and patient B, female—presented to our Department of Orthopaedics and Sports Medicine with isolated femoral shaft fractures. Both were admitted due to wakeboard-related noncontact injuries, where patient A fell while performing a sit-down start during cable wakeboarding and patient B after attempting a wake-jump. Both patients were being pulled by motorboats at roughly 40 km/h. After clinical examination and radiography, left spiral (AO classification: 32-A1.2) (patient A) and right-sided bending, wedge (AO classification 32-B2.2) (patient B) isolated femoral shaft fractures were diagnosed. No concomitant injuries were reported. For treatment, long reamed locked nails were applied, while the patients were under spinal anaesthesia. Physiotherapy was prescribed postoperatively. Patient A returned to wakeboarding 155 days after the surgery, and patient B returned after approximately half a year. Conclusion. This case series shows that even in noncontact sports such as wakeboarding, high-energy forces applied to the femur can cause isolated femoral shaft fractures. Despite multiple reports in various sports of stress fractures of the femur, there are few publications of direct trauma.
Full path single-shot imaging of femtosecond pulse collapse in air turbulence
Creators: name: Larkin, I.
name: Griff-McMahon, J.
name: Schweinsberg, A.
name: Goffin, A.
name: Valenzuela, A.
name: Milchberg, H. M.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: In a single shot, we measure the full propagation path, including the evolution to pulse collapse, of a high power femtosecond laser pulse propagating in air. This technique enables single-shot examination of the effect of parameters that fluctuate on a shot-to-shot basis, such as pulse energy, pulse duration, and air turbulence-induced refractive index perturbations. We find that even in lab air over relatively short propagation distances, turbulence plays a significant role in determining the location of pulse collapse.