cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Southern green shield bug in soybean
Creators: name: Petrović, Kristina
name: Milovac, Željko
name: Đorđević, Vuk
name: Balešević Tubić, Svetlana
name: Vasiljević, Marjana
Publisher: name: Zenodo
Year: 2021
Subjects: legumes

description: Shield bugs (species of the superfamily Pentatomoidea) are important insect pests in soybean production worldwide. They are also known as stink bugs because they have glands that excrete a strong odour. Two bugs have become more common in recent years in Europe: the southern green shield bug (Nezara viridula) and the brown marmorated shield bug (Halyomorpha halys). The southern green shield bug is a cosmopolitan species. It is polyphagous and damages a great number of field and vegetable crops among which soybean is a preferred crop.
Dynamic Teams: Exploring the Enabling Conditions and Outcomes of Coordination
Creators: name: Mayo, Anna
Publisher: name: Carnegie Mellon University
Year: 2019
Subjects: subject: 150311 Organisational Behaviour
subject: FOS: Economics and business

description: Organizational structures are increasingly dynamic, boundaryless, and fluid. One example of this trend is the use of highly dynamic teams—teams with short lifespans and permeable team boundaries. These conditions can offer the promise of flexible, adaptive work, but simultaneously undercut the characteristics of teams that were considered definitional in the past and are thought to be critical for facilitating coordination. Dynamic teams thus should face serious coordination challenges, and we are just beginning to understand the conditions needed for them to be effective. I begin by asking, “What are the conditions necessary for dynamic teams to operate effectively?” and derive theory from qualitative observations coupled with existing literature. I then test two interventions focused on putting some of those conditions in place in a field experiment, and I examine their implications for both individual learning and team effectiveness. The emergent grounded theory and field experiment results suggest that team launches, conducted only with a dynamic team’s core team members, can serve as cognitive scaffolds to anchor core team members’ attention either toward core team members or periphery team members. While initial attention to fellow core members and the clarification of roles can promote more emergent interdependence among those core members, initial attention to periphery members and expansion of the definition of the team can promote more integration of those periphery members into the work. That is, while dynamic teams lack the structure afforded by stability and an impermeable boundary, they can still rely on cognitive scaffolding to enable coordination. Finally, the combination of these two coordination behaviors, together, is what enhances core team members’ learning; and, counter to beliefs that individual learning and team
efficiency present a tradeoff to be balanced, individual learning is shown to facilitate team efficiency. I conclude by discussing implications of these findings for theory and research related to team beginnings, organizational design and scaffolds, learning, and the management of dynamic teams.
Formation and dynamics of self-sustained neutron haloes in disk accreting sources
Creators: name: Belyanin, A. A.
name: Derishev, E. V.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: It has been recognized long ago that the presence of hot plasma in the inner accretion disks around black holes could lead to the neutron production via dissociation of helium nuclei. We show that, for a broad range of accretion parameters, neutrons effectively decouple from protons and pile up in the inner disk leading to the formation of self-sustained halo. This means that new neutrons in the halo are supplied mainly by the splitting of helium nuclei in their collisions with existing neutrons. Once formed, such a halo can exist even if the proton temperature is much lower than the energy threshold of helium dissociation. We show that neutron haloes can be the natural source of relativistic electrons and positrons, providing characteristic comptonization spectra and hard spectral tails observed in many black hole candidates, and also giving rise to relativistic outflows. Deuterium gamma-ray line at 2.2 MeV resulting from neutron capture is also expected at a level detectable by future INTEGRAL mission. Furthermore, the presence of a neutron halo strongly affects the dynamics of accretion and leads to the rich variety of transient dynamical regimes.
description: 10 pages, submitted to Astronomy and Astrophysics
Transcriptional bursts in a non-equilibrium model for gene regulation by supercoiling
Creators: name: Ancona, Marco
name: Bentivoglio, Alessandro
name: Brackley, Chris A.
name: Gonnella, Giuseppe
name: Marenduzzo, Davide
Publisher: name: arXiv
Year: 2019
Subjects: subject: Biological Physics (physics.bio-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We analyse transcriptional bursting within a stochastic non-equilibrium model which accounts for the coupling between the dynamics of DNA supercoiling and gene transcription. We find a clear signature of bursty transcription when there is a separation between the timescales of transcription initiation and supercoiling dissipation - the latter may either be diffusive or mediated by topological enzymes, such as type I or type II topoisomerases. In multigenic DNA domains we observe either bursty transcription, or transcription waves; the type of behaviour can be selected for by controlling gene activity and orientation. In the bursty phase, the statistics of supercoiling fluctuations at the promoter are markedly non-Gaussian.
description: 9 pages, 6 figure, 1 Supporting Material
PyProcar: A Python library for electronic structure pre/post-processing
Creators: name: Herath, Uthpala
name: Tavadze, Pedram
name: He, Xu
name: Bousquet, Eric
name: Singh, Sobhit
name: Muñoz, Francisco
name: Romero, Aldo H.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The PyProcar Python package plots the band structure and the Fermi surface as a function of site and/or s,p,d,f - projected wavefunctions obtained for each $k$-point in the Brillouin zone and band in an electronic structure calculation. This can be performed on top of any electronic structure code, as long as the band and projection information is written in the PROCAR format, as done by the VASP and ABINIT codes. PyProcar can be easily modified to read other formats as well. This package is particularly suitable for understanding atomic effects into the band structure, Fermi surface, spin texture, etc. PyProcar can be conveniently used in a command line mode, where each one of the parameters define a plot property. In the case of Fermi-surfaces, the package is able to plot the surface with colors depending on other properties such as the electron velocity or spin projection. The mesh used to calculate the property does not need to be the same as the one used to obtain the Fermi surface. A file with a specific property evaluated for each $k$-point in a $k-$mesh and for each band can be used to project other properties such as electron-phonon mean path, Fermi velocity, electron effective mass, etc. Another existing feature refers to the band unfolding of supercell calculations into predefined unit cells.
description: 32 pages, 14 figures, Submitted to "Computer Physics Communications", project url: "https://github.com/romerogroup/pyprocar"
Discovery of the Low-Redshift Optical Afterglow of GRB 011121 and Its Progenitor Supernova 2001ke
Creators: name: Garnavich, P. M.
name: Stanek, K. Z.
name: Wyrzykowski, L.
name: Infante, L.
name: Bendek, E.
name: Bersier, D.
name: Holland, S. T.
name: Jha, S.
name: Matheson, T.
name: Kirshner, R. P.
name: Krisciunas, K.
name: Phillips, M. M.
name: Carlberg, R. G.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present the discovery and follow-up observations of the afterglow of the GRB 011121 and its associated supernova SN 2001ke. Images were obtained with the OGLE 1.3m telescope in BVRI passbands, starting 10.3 hours after the burst. The temporal analysis of our early data indicates a steep decay, independent of wavelength with power-law index alpha=-1.72+/-0.05. There is no evidence for a break in the light curve earlier than 2.5 days after the burst. The spectral energy distribution determined from the early broad-band photometry is a power-law with index beta=-0.66+/-0.13 after correcting for a large reddening. Spectra, obtained with the Magellan 6.5m Baade telescope, reveal narrow emission lines from the host galaxy which provide a redshift of z=0.362+/-0.001 to the GRB. We also present late R and J-band observations of the afterglow between 7-17 days after the burst. The late-time photometry shows a large deviation from the initial decline and our data combined with Hubble Space Telescope photometry provide strong evidence for a supernova peaking about 12 rest-frame days after the GRB. The first spectrum ever obtained of a GRB supernova at cosmological distance revealed a blue continuum. SN 2001ke was more blue near maximum than SN 1998bw and faded more quickly which demonstrates that a range of properties are possible in supernovae which generate GRB. The blue color is consistent with a supernova interacting with circumstellar gas and this progenitor wind is also evident in the optical afterglow. This is the best evidence to date that classical, long gamma-ray bursts are generated by core-collapse supernovae.
description: 22 pages, 9 postscript figures. Submitted to ApJ
Tomoxelia tropica Bernhauer 1901
Creators: name: Pace, Roberto
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Tomoxelia
Tomoxelia tropica

description: Tomoxelia tropica Bernhauer, 1901
 Tomoxelia tropica Bernhauer, 1901: 164. — Pace 1999: 24.
 MATÉRIEL EXAMINÉ. — Madagascar Nord. Montagne d’Ambre, Dr Nodier, 1 ♂.
 Madagascar Est. Ambodivohangy, X.1946, J. Vadon, 1 ♀. — Nosy Mitsio, 13-14.I.1960, R. Paulian, 1 ♂.
 Madagascar. Sans autre précision, 1 ♀.
RÉPARTITION. — Madagascar Est, Madagascar Ouest, Madagascar Nord.
description: Published as part of Pace, Roberto, 2008, Aleocharinae (Insecta, Coleoptera, Staphylinidae) de Madagascar, pp. 555-577 in Zoosystema 30 (3) on page 564, DOI: 10.5281/zenodo.5395859
On the curious pulsation properties of the accreting millisecond pulsar IGR J17379-3747
Creators: name: Bult, Peter
name: Markwardt, Craig B.
name: Altamirano, Diego
name: Arzoumanian, Zaven
name: Chakrabarty, Deepto
name: Gendreau, Keith C.
name: Guillot, Sebastien
name: Jaisawal, Gaurava K.
name: Ray, Paul. S.
name: Strohmayer, Tod E.
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: We report on the Neutron Star Interior Composition Explorer (NICER) monitoring campaign of the 468 Hz accreting millisecond X-ray pulsar IGR J17379-3747. From a detailed spectral and timing analysis of the coherent pulsations we find that they show a strong energy dependence, with soft thermal emission lagging about 640 microseconds behind the hard, Comptonized emission. Additionally, we observe uncommonly large pulse fractions, with measured amplitudes in excess of 20% sinusoidal fractional amplitude across the NICER passband and fluctuations of up to ~70%. Based on a phase-resolved spectral analysis, we suggest that these extreme properties might be explained if the source has an unusually favorable viewing geometry with a large magnetic misalignment angle. Due to these large pulse fractions, we were able to detect pulsations down to quiescent luminosities (~5 x 10^33 erg s^-1). We discuss these low-luminosity pulsations in the context of transitional millisecond pulsars.
description: 16 pages, 8 figures, 3 tables. Accepted for publication in ApJ
Tomoxelia bulbosa Pace 2006
Creators: name: Pace, Roberto
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Tomoxelia
Tomoxelia bulbosa

description: Tomoxelia bulbosa Pace, 2006
 Tomoxelia bulbosa Pace, 2006: 465.
 MATÉRIEL EXAMINÉ. — Madagascar Sud. Ankazoabo, VII.1948, P. Cl. [Pierre Clément], 2 ♀♀.
RÉPARTITION. — Madagascar Nord, Madagascar Sud.
description: Published as part of Pace, Roberto, 2008, Aleocharinae (Insecta, Coleoptera, Staphylinidae) de Madagascar, pp. 555-577 in Zoosystema 30 (3) on page 564, DOI: 10.5281/zenodo.5395859
Tomoxelia madagascariensis Pace 1994
Creators: name: Pace, Roberto
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Tomoxelia
Tomoxelia madagascariensis

description: Tomoxelia madagascariensis Pace, 1994
 Tomoxelia madagascariensis Pace, 1994: 64; 1999: 25.
 MATÉRIEL EXAMINÉ. — Madagascar Centre. Tsimbazaza, VI.1956, R. Paulian, 1 ♂, 1 ♀.
RÉPARTITION. — Madagascar Est, Madagascar Centre.
description: Published as part of Pace, Roberto, 2008, Aleocharinae (Insecta, Coleoptera, Staphylinidae) de Madagascar, pp. 555-577 in Zoosystema 30 (3) on page 564, DOI: 10.5281/zenodo.5395859
UNISECO H2020 Problematikos santrauka: Agroekologinio ūkininkavimo žinių ir praktinių įgūdžių prieigos gerinimas Lietuvos ūkininkams siekiant sustiprinti perėjimą prie agroekologinio žemės ūkio
Creators: name: Gražvydas Jegelevičius, Elvyra Mikšytė
Publisher: name: Zenodo
Year: 2021
Subjects: UNISECO
H2020
pieno ūkiai
pieno ūkių tvarumas
pieno ūkių darnumas
aplinkosauga

description: H2020 UNISECO projekto politikos santrauka. UNISECO yra Europos mokslinių tyrimų projektas, kurio tikslas – plėtoti naujoviškus metodus, padedančius geriau suprasti socio-ekonominius ir politinius veiksnius bei galimas kliūtis, kylančias siekiant vystyti ir įgyvendinti agroekologines praktikas ES ūkininkavimo sistemose. Projekto koordinatorius: Dr. Gerald Schwarz // El.paštas: gerald.schwarz@thuenen.de // Tel. nr.: +49 531 596 5140 // Tiuneno institutas, Bundesallee 63 38116 Braunschweig, VOKIETIJA Projekto laikotarpis: 2018 gegužės 1 d.–2021 balandžio 30 d. https://cordis.europa.eu/project/id/773901 https://zenodo.org/communities/uniseco-h2020/ UNISECO EIP-Agri projektų duomenų bazėje: https://ec.europa.eu/...../understanding-and-improving-sustainability-agro APSILANKYKITE UNISECO AGRO-EKOLOGINIŲ ŽINIŲ CENTRE: https://uniseco-project.eu
Prediction of Highway Lane Changes Based on Prototype Trajectories
Creators: name: Augustin, David
name: Hofmann, Marius
name: Konigorski, Ulrich
Publisher: name: arXiv
Year: 2019
Subjects: subject: Machine Learning (cs.LG)
subject: Robotics (cs.RO)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: The vision of automated driving is to increase both road safety and efficiency, while offering passengers a convenient travel experience. This requires that autonomous systems correctly estimate the current traffic scene and its likely evolution. In highway scenarios early recognition of cut-in maneuvers is essential for risk-aware maneuver planning. In this paper, a statistical approach is proposed, which advantageously utilizes a set of prototypical lane change trajectories to realize both early maneuver detection and uncertainty-aware trajectory prediction for traffic participants. Generation of prototype trajectories from real traffic data is accomplished by Agglomerative Hierarchical Clustering. During clustering, the alignment of the cluster prototypes to each other is optimized and the cohesion of the resulting prototype is limited when two clusters merge. In the prediction stage, the similarity of observed vehicle motion and typical lane change patterns in the data base is evaluated to construct a set of significant features for maneuver classification via Boosted Decision Trees. The future trajectory is predicted combining typical lane change realizations in a mixture model. B-splines based trajectory adaptations guarantee continuity during transition from actually observed to predicted vehicle states. Quantitative evaluation results demonstrate the proposed concept's improved performance for both maneuver and trajectory prediction compared to a previously implemented reference approach.
description: VDI AUTOREG 2019, 17 pages, 5 figures
Lab-5
Creators: name: WhatEvery1Says (WE1S) Project
Publisher: name: Zenodo
Year: 2021
Subjects: subject: Humanities
subject: FOS: Humanities
subject: Journalism

description: Documentation deposit (reports and lab notes) of the WhatEvery1Says (WE1S) project's Team 5 — research team studying the broader profile of the humanities in society as represented in journalistic media.. WE1S follows an "open science" and "open lab notebooks" research paradigm to promote open, reproducible research in the digital humanities. We deposit the reports and lab notes of each of our main research teams to serve as the underlying record of our analyses and conclusions (for example, as reported in our Key Findings). Disclaimer: These reports and lab notes are deposited "as is" in their raw form. The open science paradigm is rapidly evolving, and is new in digital humanities research. Ideally, our project could have deployed more standardized, better organized forms of taking notes and recording analytical procedures (e.g., by using electronic lab notebooks or data workflow systems of the kind developed for the STEM sciences). But we hope that our lab records, even while not as easy to read and understand as they might be in a hypothetical "redo" of our project, can set an early model for future, improved practices of open and reproducible research in the digital humanities. Note: Our lab records are deposited in both .zip and .7z (7-Zip) compressed formats because Windows users may have difficulty decompressing some of the .zip files due to issues related to file names that are too long.
title: SARBAT DA BHALA
title: SIKH IMMIGRANTS AND THE PROSPERITY OF THE MULTITUDE
titleType: Subtitle
Creators: name: De Quintana Lasa, Begona
Publisher: name: Washington State University
Year: 2024
Subjects: cultural values
Sikh
community building
theory of the multitude
Immigrants

description: This project aims to investigate the role of cultural values in community building within the Sikh diaspora in the US and the potential for cooperation with other immigrant groups
description: through the lens of Michael Hardt and Antonio Negri’s theory of the multitude. Indians are lauded as a ‘model minority’, but the immigration stories of Sikh Punjabis are often different to that of the high-skilled Indian immigrant that is frequently the focus of scholarship. My research aims to centre these stories and to investigate how the values inherent to the community enable the networks necessary for the success of these individuals. Given the history of the Sikh community, throughout which they have been forced to fight against different kinds of oppression –as well as chosen to fight for the rights of others–, the purpose of this project was to investigate the ways in which these values translate to their situation in the diaspora and whether they facilitate their cooperation with other immigrant communities, particularly the Latinx community, due to already existing precedents and cultural similarities.
description: Since the purpose of this project was, from its very inception, to centre the voices of the Sikh community to make them authors, rather than subjects, in this study, I designed a survey through which to gather the perspectives of the members of the community on the three distinct but interconnected aspects of their experience: how the Sikh identity is embraced, transformed or challenged in the diaspora; in what ways the Sikhi praxis plays a role in their socio-economic success and the ways in which their bioproduction reflects Sikh values, and; their sociopolitical involvement and the potentiality for cooperation between Sikhs and other immigrant communities. This project has attempted to offer a platform for Sikhs containing a multitude of intersecting identities to voice their unique lived experience. Through the interplay of subjectivities of each participant, a picture was formed; sometimes in line with the expectations of the project, and often in a different, surprising way.
Relativistic Kinetic Equation for Induced Compton Scattering of Polarized Radiation
Creators: name: Nagirner, Dmitrij I.
name: Poutanen, Juri
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The relativistic kinetic equations describing time evolution and space dependence of the density matrices of polarized photons and electrons interacting via Compton scattering are deduced from the quantum Liouville equation. The induced scattering and exclusion principle are taken into account. The Bogoliubov method is used in the frame of quantum electrodynamics. The equation for polarized radiation scattered by unpolarized electrons is considered as a particular case and is reformulated in terms of the Stokes parameters. The expressions for the scattering amplitudes and cross-sections are derived simultaneously.
description: 19 pages; Astronomy & Astrophysics, in press
Identification Of Potential Cytotoxic Inhibitors From Physalis Minima
Creators: name: Canh, Viet Cuong Le
name: Ba, Vinh Le
name: Pham Thi Hai Yen
name: Thi, Lien Le
name: Pham Thi Thuy Hoai
name: Dat, Ton That Huu
name: Thao, Do Thi
name: Bach, Long Giang
name: Kim, Young Ho
name: Anh, Hoang Le Tuan
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: A phytochemical investigation of Physalis minima led to the isolation of six withanolides, including withanolide E (1), withaperuvin C (2), 4β-hydroxywithanolide E (3), 28-hydroxywithaperuvin C (4), physaperuvin G (5), and 4-deoxywithaperuvin (6). Their chemical structures were elucidated by 1 D-NMR and 2 D-NMR data, as well as comparison with the data reported in the literature. All isolated compounds were evaluated for their cytotoxic activity against HepG2, SK-LU-1, and MCF7 cancer cell lines. As the obtained results, compounds 1 and 3 displayed the strongest cytotoxicity against HepG2, SK-LU-1, and MCF7 cell lines with IC50 value ranging from 0.051 ± 0.004 to 0.86 ± 0.09 μg/mL.
How response designs and class proportions affect the accuracy of validation data
Creators: name: Radoux, Julien
name: Waldner, François
name: Bogaert, Patrick
Publisher: name: arXiv
Year: 2019
Subjects: subject: Applications (stat.AP)
subject: FOS: Computer and information sciences

description: Reference data collected to validate land cover maps are generally considered free of errors. In practice, however, they contain errors despite all efforts to minimise them. These errors then propagate up to the accuracy assessment stage and impact the validation results. For photo-interpreted reference data, the three most widely studied sources of error are systematic incorrect labelling, vigilance drops, and demographic factors. How internal estimation errors, i.e., errors intrinsic to the response design, affect the accuracy of reference data is far less understood. We analysed the impact of estimation errors for two types of legends as well as for point-based and partition-based response designs with a range of sub-sample sizes. We showed that the accuracy of response designs depends on the class proportions within the sampling units, with complex landscapes being more prone to errors. As a result, response designs where the number of sub-samples are fixed are inefficient, and the labels of reference data sets have inconsistent confidence levels. To control estimation errors, to guarantee high accuracy standards of validation data, and to minimise data collection efforts, we proposed to rely on confidence intervals of the photo-interpreted data to define how many sub-samples should be labelled. In practice, sub-samples are iteratively selected and labelled until the estimated class proportions reach the desired level of confidence. As a result, less effort is spent on labelling obvious cases and the spared effort can be allocated to more complex cases. This approach could reduce the labelling effort by 50% to 75% in our study site, with greater gains in homogeneous landscapes. We contend that adopting this optimisation approach will not only increase the efficiency of reference data collection but will also help deliver reliable accuracy estimates to the user community.
Tomoxelia curtipennis Pace 2006
Creators: name: Pace, Roberto
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Tomoxelia
Tomoxelia curtipennis

description: Tomoxelia curtipennis Pace, 2006
 Tomoxelia curtipennis Pace, 2006: 463.
 MATÉRIEL EXAMINÉ. — Madagascar Centre. Andringitra, Plateau Andohariana, 2030 m, CNRS RCP 225, 14-26.XI.1970, lavage de sol sous litière, A. Descarpentries, 2 ♀♀. — Pic Boby, défilé nord, lavage de sol sous litière, CNRS RCP 225, 24.XI.1970, A. Descarpentries, 1 ♂. — Andringitra Est, Marositry, est de la riv. Antsifotra, 2000 m, CNRS RCP 225, 2-5.XII.1970, 1 ♀.
RÉPARTITION. — Madagascar Est, Madagascar Centre.
description: Published as part of Pace, Roberto, 2008, Aleocharinae (Insecta, Coleoptera, Staphylinidae) de Madagascar, pp. 555-577 in Zoosystema 30 (3) on page 564, DOI: 10.5281/zenodo.5395859
Lab-6
Creators: name: WhatEvery1Says (WE1S) Project
Publisher: name: Zenodo
Year: 2021
Subjects: subject: Humanities
subject: FOS: Humanities
subject: Journalism
subject: Social media

description: Documentation deposit (reports and lab notes) of the WhatEvery1Says (WE1S) project's Team 6 — research team studying the humanities in different media, including social media. WE1S follows an "open science" and "open lab notebooks" research paradigm to promote open, reproducible research in the digital humanities. We deposit the reports and lab notes of each of our main research teams to serve as the underlying record of our analyses and conclusions (for example, as reported in our Key Findings). Disclaimer: These reports and lab notes are deposited "as is" in their raw form. The open science paradigm is rapidly evolving, and is new in digital humanities research. Ideally, our project could have deployed more standardized, better organized forms of taking notes and recording analytical procedures (e.g., by using electronic lab notebooks or data workflow systems of the kind developed for the STEM sciences). But we hope that our lab records, even while not as easy to read and understand as they might be in a hypothetical "redo" of our project, can set an early model for future, improved practices of open and reproducible research in the digital humanities. Note: Our lab records are deposited in both .zip and .7z (7-Zip) compressed formats because Windows users may have difficulty decompressing some of the .zip files due to issues related to file names that are too long.
Structure-based drug target prioritisation and rational drug design for targeting Chlamydia trachomatis eye infections
Creators: name: Anupriya Sadhasivam
name: Hemavathy Nagarajan
name: Vetrivel Umashankar
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Chlamydia trachomatis (C.t) is a major causative of infectious blindness in world. It is a real challenge to combat Chlamydial infection as it is an intracellular pathogen. Hence, it is essential to determine the most potential targets of C.t in order to inhibit or suppress its virulence during its infectious phase. Thus, in this study, the highly expressed-cum-most essential genes reported through our earlier study were reprioritized by structure-based comparative binding site analysis with host proteome. Therefore, computational approaches involving molecular modelling, large-scale binding site prediction and comparison, molecular dynamics simulation studies were performed to narrow down the most potential targets. Furthermore, high-throughput virtual screening and ADMETox were also performed to identify potential hits that shall efficiently inhibit the prioritised targets. Hence, by this study we report Pyruvoyl-dependent arginine decarboxylase (PvlArgDC), DNA-repair protein (RecO) and porin (outer membrane protein) as the most viable targets of C.t which can be potentially targeted by compounds, NSC_13086, MFCD00276409, MFCD05662003, respectively. AbbreviationsC.tChlamydia trachomatisSTDSexually transmitted diseaseHTVSHigh-throughput virtual screeningADMEToxAbsorption, Distribution, Metabolism, Excretion and ToxicityPMPocketMatchMDMolecular Dynamics simulationSPStandard precisionXPExtra precisionMMGBSAMolecular mechanics energies combined with generalised Born and surface area continuum solvationOMPOuter membrane proteinPvlArgDCPyruvoyl-dependent arginine decarboxylaseRecORecombination protein O. Chlamydia trachomatis Sexually transmitted disease High-throughput virtual screening Absorption, Distribution, Metabolism, Excretion and Toxicity PocketMatch Molecular Dynamics simulation Standard precision Extra precision Molecular mechanics energies combined with generalised Born and surface area continuum solvation Outer membrane protein Pyruvoyl-dependent arginine decarboxylase Recombination protein O. Communicated by Ramaswamy H. Sarma
Integrality Gap of the Vertex Cover Linear Programming Relaxation
Creators: name: Singh, Mohit
Publisher: name: arXiv
Year: 2019
Subjects: subject: Data Structures and Algorithms (cs.DS)
subject: Discrete Mathematics (cs.DM)
subject: FOS: Computer and information sciences

description: We give a characterization result for the integrality gap of the natural linear programming relaxation for the vertex cover problem. We show that integrality gap of the standard linear programming relaxation for any graph G equals $\left(2-\frac{2}{χ^f(G)}\right)$ where $χ^f(G)$ denotes the fractional chromatic number of G.
description: 6 pages
Lab-7
Creators: name: WhatEvery1Says (WE1S) Project
Publisher: name: Zenodo
Year: 2021
Subjects: subject: Humanities
subject: FOS: Humanities
subject: Journalism

description: Documentation deposit (reports and lab notes) of the WhatEvery1Says (WE1S) project's Team 7 — research team studying the impact of government, funding agencies, and foundations on the humanities as perceived in journalistic media. WE1S follows an "open science" and "open lab notebooks" research paradigm to promote open, reproducible research in the digital humanities. We deposit the reports and lab notes of each of our main research teams to serve as the underlying record of our analyses and conclusions (for example, as reported in our Key Findings). Disclaimer: These reports and lab notes are deposited "as is" in their raw form. The open science paradigm is rapidly evolving, and is new in digital humanities research. Ideally, our project could have deployed more standardized, better organized forms of taking notes and recording analytical procedures (e.g., by using electronic lab notebooks or data workflow systems of the kind developed for the STEM sciences). But we hope that our lab records, even while not as easy to read and understand as they might be in a hypothetical "redo" of our project, can set an early model for future, improved practices of open and reproducible research in the digital humanities. Note: Our lab records are deposited in both .zip and .7z (7-Zip) compressed formats because Windows users may have difficulty decompressing some of the .zip files due to issues related to file names that are too long.
High-speed Ejecta from the Gamma-ray Binary PSR B1259-63/LS 2883
Creators: name: Pavlov, George G.
name: Hare, Jeremy
name: Kargaltsev, Oleg
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Observing the famous high-mass, eccentric X-ray and gamma-ray binary PSR B1259-63/LS 2883 with Chandra, we detected X-ray emitting clumps moving from the binary with speeds of about 0.1 of the speed of light, possibly with acceleration. The clumps are being ejected at least once per binary period, 3.4 years, presumably around binary periastrons. The power-law spectra of the clumps can be interpreted as synchrotron emission of relativistic electrons. Here we report the results of 8 observations of the clumps in 2011-2017 (two binary cycles) and discuss possible interpretations of this unique phenomenon.
description: Published in "Rendiconti Lincei. Scienze Fisiche e Naturali''. The final authenticated version is available online at \url{http://link.springer.com/article/10.1007/s12210-019-00765-0}. Based on presentation at the Conference on Gamma-Ray Astrophysics with the AGILE Satellite held at Accademia Nazionale dei Lincei and Agenzia Spaziale Italiana, Rome on December 11-13, 2017
Tomoxelia ambrensis Pace 2008, n. sp.
Creators: name: Pace, Roberto
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Tomoxelia
Tomoxelia ambrensis

description: Tomoxelia ambrensis n. sp.
(Figs 4G; 5 A-C)
 HOLOTYPE. — Madagascar Nord. Montagne d’Ambre, Dr Ch. Nodier, 1 ♂.
PARATYPES. — Mêmes données que l’holotype, 2 ♂♂, 5 ♀♀.
 Madagascar Est. Ambodivohangy, XI.1950, J. Vadon, 1 ♀.
 DIAGNOSE. — La nouvelle espèce, par la forme de l’édéage, est taxonomiquement voisine de T. tropica Bernhauer, 1901, elle aussi malgache. Elle s’en sépare par le quatrième antennomère aussi long que large (transverse chez T. tropica) et par le sommet de l’édéage beaucoup plus long et, en vue ventrale, très étroit (peu étroit et sinueux latéralement chez T. tropica).
DESCRIPTION
Longueur 2,5 mm. Corps brillant, sauf sur la bande médiane longitudinale du pronotum qui est mate. Corps brun, l’abdomen rougeâtre, avec le quatrième urotergite libre brun-rougeâtre; antennes brunes avec les deux antennomères basaux jaune-rougeâtre; pattes jaune-rougeâtre. Ponctuation de la tête et de l’abdomen bien marquée. Le pronotum présente dans la bande médiane longitudinale une réticulation forte qui efface la ponctuation, sur les côtés il montre une réticulation nette et une ponctuation épaisse. Réticulation de la tête et des élytres évidente, celle de l’abdomen absente. Le pronotum a une large dépression médiane postérieure. Quatrième antennomère aussi long que large, cinquième faiblement transverse, les autres antennomères jusqu’au dixième transverses. Dents médianes de la marge postérieure du sixième urotergite libre du mâle plus courtes que les latérales. Édéage: Figure 5A, B; spermathèque: Figure 5C.
 Tomoxelia andohahela Pace, 1999 (Fig. 5D)
 Tomoxelia andohahela Pace, 1999: 27.
 MATÉRIEL EXAMINÉ. — Madagascar Nord. Diego Suarez, VII.1893, Ch. Alluaud, 1 ♂, 2 ♀♀. — Montagne d’Ambre, Dr Nodier, 3 ♀♀.
RÉPARTITION. — Madagascar Est, Madagascar Nord.
REMARQUE
La femelle de cette espèce n’était pas connue. Nous donnons ici le dessin de la spermathèque (Fig. 5D).
description: Published as part of Pace, Roberto, 2008, Aleocharinae (Insecta, Coleoptera, Staphylinidae) de Madagascar, pp. 555-577 in Zoosystema 30 (3) on pages 564-566, DOI: 10.5281/zenodo.5395859
The dominant X-ray wind in massive star binaries
Creators: name: Pittard, J. M.
name: Stevens, I. R.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We investigate which shocked wind is responsible for the majority of the X-ray emission in colliding wind binaries, an issue where there is some confusion in the literature, and which we show is more complicated than has been assumed. We find that where both winds rapidly cool (typically close binaries), the ratio of the wind speeds is often more important than the momentum ratio, because it controls the energy flux ratio, and the faster wind is generally the dominant emitter. When both winds are largely adiabatic (typically long-period binaries), the slower and denser wind will cool faster and the stronger wind generally dominates the X-ray luminosity.
description: 4 pages, 1 figure, accepted by A&A Letters
diabetic-ketoacidosis-update-on-treatment-and-its-complications.pdf
Creators: name: Safdar, Zainab
Publisher: name: figshare
Year: 2021
Subjects: subject: 110306 Endocrinology
subject: FOS: Clinical medicine

description: Diabetic ketoacidosis is a quite common ailment in hospitals, despite its preventability. A large population of our country is facing diabetic ketoacidosis during their stay in the hospitals. There are many people who are facing challenges with the treatment of this common disease. The disease is easily managed by professionals nowadays. The management of this disease has been improved with a new era and new technologies. The national policies have been introduced which aid in the provision of the standard to the patients, expanding best services and decreasing the rate of deaths and disabilities in the patients with diabetic ketoacidosis. The management of diabetic ketoacidosis includes metabolic targets and leveling the electrolytes and decreasing the harmful effects of this complication.
Horizontal-Branch Morphology as an Age Indicator
Creators: name: Lee, Young-Wook
name: Yoon, Suk-Jin
name: Rey, Soo-Chang
name: Chaboyer, Brian
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present our recent revision of model constructions for the horizontal-branch (HB) morphology of globular clusters, which suggests the HB morphology is more sensitive to age compared to our earlier models. We also present our high precision CCD photometry for the classic second parameter pair M3 and M13. The relative age dating based on this photometry indicates that M13 is indeed older than M3 by 1.7 Gyr. This is consistent with the age difference predicted from our new models, which provides a further support that the HB morphology is a reliable age indicator in most population II stellar systems.
description: 3 pages, 2 figures, to appear in the Proceedings of the Conference "Astrophysical Ages and Timescales", ASP conference Series, edited by T.von Hippel, N.Mansen and C.Simpson
The Scikit-HEP Project
Creators: name: Rodrigues, Eduardo
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computational Physics (physics.comp-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The Scikit-HEP project is a community-driven and community-oriented effort with the aim of providing Particle Physics at large with a Python scientific toolset containing core and common tools. The project builds on five pillars that embrace the major topics involved in a physicist's analysis work: datasets, data aggregations, modelling, simulation and visualisation. The vision is to build a user and developer community engaging collaboration across experiments, to emulate scikit-learn's unified interface with Astropy's embrace of third-party packages, and to improve discoverability of relevant tools.
description: 6 pages, 2 figures, Proceedings of the 23rd International Conference on Computing in High Energy and Nuclear Physics (CHEP 2018), 9-13 July 2018
Brachida sambavensis Pace 2006
Creators: name: Pace, Roberto
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Brachida
Brachida sambavensis

description: Brachida sambavensis Pace, 2006
 Brachida sambavensis Pace, 2006: 499.
 MATÉRIEL EXAMINÉ. — Madagascar. Sambirano, Nosy Komba (crête N), V.1956, A.R., 2 ♀♀.
RÉPARTITION. — Madagascar Est.
description: Published as part of Pace, Roberto, 2008, Aleocharinae (Insecta, Coleoptera, Staphylinidae) de Madagascar, pp. 555-577 in Zoosystema 30 (3) on page 568, DOI: 10.5281/zenodo.5395859
Increasing signal amplitude in electrical impedance tomography of neural activity using a parallel resistor inductor capacitor (RLC) circuit
Creators: name: Hope, James
name: Aqrawe, Zaid
name: Lim, Marshall
name: Vanholsbeeck, Frederique
name: McDaid, Andrew
Publisher: name: arXiv
Year: 2019
Subjects: subject: Neurons and Cognition (q-bio.NC)
subject: Instrumentation and Detectors (physics.ins-det)
subject: FOS: Biological sciences
subject: FOS: Physical sciences
subject: 92C55

description: Objective: To increase the impedance signal amplitude produced during neural activity using a novel approach of implementing a parallel resistor inductor capacitor (RLC) circuit across the current source used in electrical impedance tomography (EIT) of peripheral nerve. Approach: Experiments were performed in vitro on sciatic nerve of Sprague-Dawley rats. Design of the RLC circuit was performed in electrical circuit modelling software, aided by in vitro impedance measurements on nerve and nerve cuff in the range 5 Hz to 50 kHz. Main results: The frequency range 17 +/- 1 kHz was selected for the RLC experiment. The RLC experiment was performed on four subjects using an RLC circuit designed to produce a resonant frequency of 17 kHz with a bandwidth of 3.6 kHz, and containing a 22 mH inductive element and a 3.45 nF capacitive element. With the RLC circuit connected, relative increases in the impedance signal (+/- 3sig noise) of 44 % (+/-15 %), 33 % (+/-30 %), 37 % (+/-8.6 %), and 16 % (+/-19 %) were produced. Significance: The increase in impedance signal amplitude at high frequencies, generated by the novel implementation of a parallel RLC circuit across the drive current, improves spatial resolution by increasing the number of parallel drive currents which can be implemented in a frequency division multiplexed (FDM) EIT system, and aids the long term goal of a real-time FDM EIT system by reducing the need for ensemble averaging.
description: 18 pages, 14 figures, journal submission
Asteroseismology of the g-mode sdB pulsator TIC 278659026 (EC 21494-7018)
Creators: name: Charpinet, Stéphane
name: Brassard, Pierre
name: Fontaine, Gilles
name: Van Grootel, Valérie
name: Zong, Weikai
name: Giammichele, Noemi
name: Team, The TASC WG8
Publisher: name: Zenodo
Year: 2019
Subjects: stars
asteroseismology
subdwarfs

description: We present the asteroseismic analysis of TIC 278659026 (EC21494-7018), a bright sdB star discovered to be pulsating by the NASA/TESS instrument. The analysis is based on ~28 day of nearly uninterrupted photometry revealing a rich g-mode pulsation spectrum, which is exploited, through a forward modelling optimization technique, to deliver constraints on TIC 278659026 fundamental parameters and internal structure. Among other derived properties, we find that this apparently single sdB star has a significantly lower mass (M = 0.391 +- 0.009 Msun) than typical hot B subdwarfs, suggesting that it could originate from a massive (M > 2 Msun) red giant that has not gone through the helium-core flash. We also obtain a relatively clear view of the internal chemical stratification inside TIC 278659026 which indicates that this star has burnt ~ 43% (in mass) of its central helium and possesses a relatively large mixed core. This finding is in line with trends already uncovered for other g-mode sdB pulsators analyzed with asteroseismology. Finally, the amount of oxygen produced in the core is estimated, which could provide interesting constraints on the uncertain C12(alpha,gamma)O16 nuclear reaction rate.
Material-specific properties applied to an environmental risk assessment of engineered nanomaterials – implications on grouping and read-across concepts
Creators: name: Wigger, Henning
name: Nowack, Bernd
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Engineered nanomaterials (ENMs) are intentionally designed in different nano-forms of the same parent material in order to meet application requirements. Different grouping and read-across concepts are proposed to streamline risk assessments by pooling nano-forms in one category. Environmental grouping concepts still are in their infancy and mainly focus on grouping by hazard categories. Complete risk assessments require data on environmental release and exposure not only for ENMs but also for their nano-forms. The key requirement is to identify and to distinguish the production volumes of the ENMs regarding nano-form-specific applications. The aim of our work was to evaluate whether such a grouping is possible with the available data and which influence it has on the environmental risk assessment of ENMs. A functionality-driven approach was applied to match the material-specific property (i.e. crystal form/morphology) with the functions employed in the applications. We demonstrate that for nano-TiO2, carbon nanotubes (CNTs), and nano-Al2O3 the total production volume can be allocated to specific nano-forms based on their functionalities. The differentiated assessments result in a variation of the predicted environmental concentrations for anatase vs. rutile nano-TiO2, single-wall vs. multi-wall CNTs and α- vs. γ-nano-Al2O3 by a factor of 2 to 13. Additionally, the nano-form-specific predicted no-effect concentrations for these ENMs were derived. The risk quotients for all nano-forms indicated no immediate risk in freshwaters. Our results suggest that grouping and read-across concepts should include both a nano-form release potential for estimating the environmental exposure and separately consider the nano-forms in environmental risk assessments.
On the integral closure of ideals
Creators: name: Corso, Alberto
name: Huneke, Craig
name: Vasconcelos, Wolmer V.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Commutative Algebra (math.AC)
subject: FOS: Mathematics

description: Among the several types of closures of an ideal $I$ that have been defined and studied in the past decades, the integral closure $\bar{I}$ has a central place being one of the earliest and most relevant. Despite this role, it is often a difficult challenge to describe it concretely once the generators of $I$ are known. Our aim in this note is to show that in a broad class of ideals their radicals play a fundamental role in testing for integral closedness, and in case $I\neq \bar{I}$, $\surd{I}$ is still helpful in finding some fresh new elements in $\bar{I}\setminus I$. Among the classes of ideals under consideration are: complete intersection ideals of codimension two, generic complete intersection ideals, and generically Gorenstein ideals.
description: 15 pages