cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 2: of Aberrantly hypermethylated tumor suppressor genes were identified in oral squamous cell carcinoma (OSCC)
Creators: name: Kim, Soo
name: Han, Yu
name: Song, Jae
name: Lee, Chang
name: Kang, Keunsoo
name: Yi, Joo
name: Park, Hae
Publisher: name: figshare
Year: 2019
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Table S1. Selected gene primers for MSP, bisulfite sequencing, and RT-PCR analyses. (DOCX 13 kb)
Intersecting branes in pp-wave spacetime
Creators: name: Ohta, Nobuyoshi
name: Panigrahi, Kamal L.
name: Sanjay
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We derive intersecting brane solutions in pp-wave spacetime by solving the supergravity field equations explicitly. The general intersection rules are presented. We also generalize the construction to the non-extremal solutions. Both the extremal and non-extremal solutions presented here are asymptotic to BFHP plane waves. We find that these solutions do not have regular horizons.
description: 28 pages, Discussions on singularities are added, references added, published in Nucl. Phys. B; typos fixed, minor corrections
Withdrawal Management Service Access Among Individuals Who Use Substances in Canada and the United States : A Scoping Review – Protocol
Creators: name: Sundar-Maccagno, Rosa
name: Beauchesne, Rhea
name: Ti, Lianping
name: Nolan, Seonaid
Publisher: name: The University of British Columbia
Year: 2024

description: Over the last several decades, substance use, and associated harms have increased in both the United States and Canada. Physiological dependence is a predictable response to regular opioid and/or alcohol use and is responsible for the symptoms of withdrawal, which occur when an individual abruptly reduces or ceases their substance use. Facilities offering withdrawal management services (WMS), also referred to as detoxification centres, are designed to support individuals through the cessation of their substance use. WMS can provide access to pharmacological treatment options to mitigate withdrawal symptoms and minimize further substance use. These facilities may be the first point of contact with the healthcare system for individuals looking to change their relationship with substance, and WMS can act as a linkage point for individuals interested in accessing further treatment (e.g., bed-based recovery services) or other medical or social services. The primary objective of this scoping review is to identify factors which impact access of withdrawal management services (WMS) for individuals who use substances or have a substance use disorder (SUD). This review will generate data regarding barriers and facilitators to access of WMS. Knowledge gained will inform potential opportunities for intervention and improvement.
Spinning and rotating strings for N=1 SYM theory and brane constructions
Creators: name: Schvellinger, Martin
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We obtain spinning and rotating closed string solutions in AdS_5 \times T^{1,1} background, and show how these solutions can be mapped onto rotating closed strings embedded in configurations of intersecting branes in type IIA string theory. Then, we discuss spinning closed string solutions in the UV limit of the Klebanov-Tseytlin background, and also properties of classical solutions in the related intersecting brane constructions in the UV limit. We comment on extensions of this analysis to the deformed conifold background, and in the corresponding intersecting brane construction, as well as its relation to the deep IR limit of the Klebanov-Strassler solution. We briefly discuss on the relation between type IIA brane constructions and their related M-theory descriptions, and how solitonic solutions are related in both descriptions.
description: 35 pages. Dedicated to the memory of Ian I. Kogan. References added
Multi-bond forming processes : making and using dendralenes
Creators: name: Green, Nicholas John
Publisher: name: The Australian National University
Year: 2015

description: The theme of the research presented herein is the recognition and understanding of multi-bond forming processes and their utility in organic synthesis, and the development and application of such reactions to synthesise dendralenes and demonstrate their significant potential in complex molecule synthesis. Multi-bond forming processes are reactions or sequences thereof that construct two or more covalent bonds in a single synthetic operation. They are being increasingly embraced in modern synthesis. Chapter One is a review that classifies, contrasts and analyses different kinds of multi-bond forming process, highlighting their evolution and application in today's most sophisticated syntheses, and presenting an outlook for what the future may hold as the science of synthesis continues to develop. Chapter Two reports the application of multi-bond forming processes in the synthesis of conjugated frameworks, including butadienes, dendralenes, allenyl alcohols, benzofulvenes, and indenes. The development of a robust and highly functional group-tolerant palladium(0)-catalysed cross-coupling reaction allows access to these functional molecules with exceptional step economy. Furthermore, this new technology uses readily available and stable propargylic diols as substrates, obviating the classical need for conversion into reactive halogens or pseudohalogens. Chapter Three showcases the utility of conjugated hydrocarbons in rapid and efficient complex molecule synthesis. Dendralenes are subjected to enantioselective organocatalytic Diels-Alder reactions. The products of domino double-Diels-Alder reactions are found to have significantly enhanced enantiopurity compared to products of a single Diels-Alder reaction, by virtue of the Horeau effect. Until this point, the potential of dendralenes in catalytic enantioselective synthesis had remained untapped. The newly developed organocascade generates no less than four carbon-carbon bonds, and lays the platform for the very efficient synthesis of enantiopure, complex polycyclic frameworks from simple achiral, acyclic hydrocarbons.
Additional file 1: of Psychosocial interventions for Alzheimerâ s disease cognitive symptoms: a Bayesian network meta-analysis
Creators: name: Duan, Yuting
name: Lu, Liming
name: Chen, Juexuan
name: Wu, Chunxiao
name: Liang, Jielin
name: Zheng, Yan
name: Wu, Jinjian
name: Rong, Peijing
name: Tang, Chunzhi
Publisher: name: figshare
Year: 2018
Subjects: subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Computational Biology

description: Search Strategy. (DOCX 20 kb)
Solaster incertus Koehler 1917
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Valvatida
Solasteridae
Solaster
Solaster incertus

description: incertus Koehler, 1917 Solaster
Solaster incertus Koehler, 1917: 40, pl. 2, figs 2, 3, pl. 9, figs 21, 22. — Clark 1996: 193.
CURRENT STATUS. — Solaster incertus Koehler, 1917.
TYPE MATERIAL. — Kerguelen • holotype; Rallier du Baty leg.; 1913-1914; MNHN-IE-2014-95.
REMARK
Doubtful status (juvenile individual).
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on page 291, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
Working principle and demonstrator of microwave-multiplexing for the HOLMES experiment microcalorimeters
Creators: name: Becker, D. T.
name: Bennett, D. A.
name: Biasotti, M.
name: Borghesi, M.
name: Ceriale, V.
name: De Gerone, M.
name: Faverzani, M.
name: Ferri, E.
name: Fowler, J. W.
name: Gallucci, G.
name: Gard, J. D.
name: Giachero, A.
name: Hays-Wehle, J. P.
name: Hilton, G. C.
name: Mates, J. A. B
name: Nucciotti, A.
name: Orlando, A.
name: Pessina, G.
name: Puiu, A.
name: Reintsema, C. D.
name: Schmidt, D. R.
name: Swetz, D. S.
name: Ullom, J. N.
name: Vale, L. R
Publisher: name: arXiv
Year: 2019
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: FOS: Physical sciences

description: The determination of the neutrino mass is an open issue in modern particle physics and astrophysics. The direct mass measurement is the only theory-unrelated experimental tool capable to probe such quantity. The HOLMES experiment aims to measure the end-point energy of the electron capture (EC) decay of $^{163}$Ho with a statistical sensitivity on the neutrino mass as low as $\sim 1$ eV/c$^2$. In order to acquire the large needed statistics, by keeping the pile-up contribution as low as possible, 1024 transition edge sensors (TESs) with high energy and time resolutions will be employed. Microcalorimeter and bolometer arrays based on transition edge sensor with thousands of pixels are under development for several space-based and ground-based applications, including astrophysics, nuclear and particle physics, and materials science. The common necessary challenge is to develop pratical multiplexing techniques in order to simplify the cryogenics and readout systems. Despite the various multiplexing variants which are being developed have been successful, new approaches are needed to enable scaling to larger pixel counts and faster sensors, as requested for HOLMES, reducing also the cost and complexity of readout. A very novel technique that meets all of these requirements is based on superconducting microwave resonators coupled to radio-frequency Superconducting Quantum Interference Devices, in which the the changes in the TES input current is tranduced to a change in phase of a microwave signal. In this work we introduce the basics of this technique, the design and development of the first two-channel read out system and its performances with the first TES detectors specifically designed for HOLMES. In the last part we explain how to extend this approach scaling to 1024 pixels.
description: accepted on JINST
Additional file 3 of Dietary supplement of Yunkang 10 green tea and treadmill exercise ameliorate high fat diet induced metabolic syndrome of C57BL/6â€‰J mice
Creators: name: Yanzhong Zhang
name: Mingxing Gu
name: Ruru Wang
name: Menwan Li
name: Daxiang Li
name: Zhongwen Xie
Publisher: name: figshare
Year: 2020
Subjects: subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Computational Biology

description: Additional file 3: Figure S1. Diagram representing the percent of genes differentially expressed in each comparison.
A Three-Dimensional Quantum Simulation of Silicon Nanowire Transistors with the Effective-Mass Approximation
Creators: name: Wang, Jing
name: Polizzi, Eric
name: Lundstrom, Mark
Publisher: name: arXiv
Year: 2004
Subjects: subject: Other Condensed Matter (cond-mat.other)
subject: FOS: Physical sciences

description: The silicon nanowire transistor (SNWT) is a promising device structure for future integrated circuits, and simulations will be important for understanding its device physics and assessing its ultimate performance limits. In this work, we present a three-dimensional quantum mechanical simulation approach to treat various SNWTs within the effective-mass approximation. We begin by assuming ballistic transport, which gives the upper performance limit of the devices. The use of a mode space approach (either coupled or uncoupled) produces high computational efficiency that makes our 3D quantum simulator practical for extensive device simulation and design. Scattering in SNWTs is then treated by a simple model that uses so-called Buttiker probes, which was previously used in metal-oxide-semiconductor field effect transistor (MOSFET) simulations. Using this simple approach, the effects of scattering on both internal device characteristics and terminal currents can be examined, which enables our simulator to be used for the exploration of realistic performance limits of SNWTs.
description: 38 pages, 11 figures, submitted to Journal of Applied Physics
Sulforaphane attenuates platelet granule secretion through down-regulating glycoprotein VI-mediated p38 MAPK/cPLA2 signaling pathway
Creators: name: Huang, Xinhui
name: Zhou, Xinyu
name: Wu, Chunting
name: Li, Weiqi
name: Ma, Yongjie
name: He, Qilian
name: Ya, Fuli
Publisher: name: Taylor & Francis
Year: 2023
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Glycoprotein VI (GPVI) is the major collagen receptor on the platelet surface and is important in mediating granule secretion and atherothrombosis. Sulforaphane (SFN), a dietary isothiocyanate enriched in cruciferous vegetables, exerts multiple biological activities. This study aimed to investigate the efficacy of SFN on GPVI-mediated signaling and platelet granule secretion in vitro. We herein demonstrated that SFN greatly attenuated granule secretion in human gel-filtered platelets in response to collagen, including inhibiting CD62P and CD63 expression and PF4, CCL5, and ATP release. Mechanistically, these inhibitory effects of SFN were mainly mediated by its attenuation of cytosolic phospholipase A2 (cPLA2) phosphorylation and thromboxane A2 (TxA2) generation. Moreover, SFN did not further decrease the inhibitory effects of p38 MAPK inhibitor SB203580 on cPLA2 phosphorylation, TxA2 generation and granule secretion. Thus, SFN attenuates platelet granule secretion via down-regulating GPVI-mediated p38 MAPK/cPLA2/TxA2 signaling, which may play important preventive roles in cardiovascular diseases.
Gamma-Ray Bursts from Neutron Star Kicks
Creators: name: Huang, Y. F.
name: Dai, Z. G.
name: Lu, T.
name: Cheng, K. S.
name: Wu, X. F.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The idea that gamma-ray bursts might be a kind of phenomena associated with neutron star kicks was first proposed by Dar & Plaga (1999). Here we study this mechanism in more detail and point out that the neutron star should be a high speed one (with proper motion larger than $\sim 1000$ km/s). It is shown that the model agrees well with observations in many aspects, such as the energetics, the event rate, the collimation, the bimodal distribution of durations, the narrowly clustered intrinsic energy, and the association of gamma-ray bursts with supernovae and star forming regions. We also discuss the implications of this model on the neutron star kick mechanism, and suggest that the high kick speed were probably acquired due to the electromagnetic rocket effect of a millisecond magnetar with an off-centered magnetic dipole.
description: 12 pages, no figures, ApJ in press (minor revision with respect to Version 2)
Reopening the TNOs Color Controversy: Centaurs Bimodality and TNOs Unimodality
Creators: name: Peixinho, N.
name: Doressoundiram, A.
name: Delsanti, A.
name: Boehnhardt, H.
name: Barucci, M. A.
name: Belskaya, I.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We revisit the Trans-Neptunian Objects (TNOs) color controversy allegedly solved by Tegler and Romanishin 2003. We debate the statistical approach of the quoted work and discuss why it can not draw the claimed conclusions, and reanalyze their data sample with a more adequate statistical test. We find evidence for the existence of two color groups among the Centaurs. Therefore, mixing both centaurs and TNOs populations lead to the erroneous conclusion of a global bimodality, while there is no evidence for two color groups in the TNOs population alone. We use quasi-simultaneous visible color measurements published for 20 centaurs (corresponding to about half of the identified objects of this class), and conclude on the existence of two groups. With the surface evolution model of Delsanti et al. (2003) we discuss how the existence of two groups of Centaurs may be compatible with a continuous TNOs color distribution.
description: 4 pages, 4 figures, accepted for publication in Astronomy and Astrophysics Letters
Nostalgic Futures
Creators: name: Agyei, Edwin
Publisher: name: The University of British Columbia
Year: 2025

description: Pieces of place, pieces of heritage and pieces of history. Drawing from these different pieces and putting them together with sensitivity and tact is key within this thesis. Looking at food infrastructure and these pieces could be transformative in revitalizing communities dealing with drastic urban change. How could food infrastructure be an evocative tool for nostalgia, social cohesion and bringing about a renewal that takes from historic aspects and moments from the past? This thesis examines precedents, undertakes diagrammatic analysis, investigates site characteristics and demographics in trying to understand notions of place. Along with food infrastructure and how food is universal and intertwined with all our lives and plays a part in shaping how we connect and relate.
Boundary states as exact solutions of (vacuum) closed string field theory
Creators: name: Kishimoto, Isao
name: Matsuo, Yutaka
name: Watanabe, Eitoku
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We show that the boundary states are idempotent B*B=B with respect to the star product of HIKKO type closed string field theory. Variations around the boundary state correctly reproduce the open string spectrum with the gauge symmetry. We explicitly demonstrate it for the tachyonic and massless vector modes. The idempotency relation may be regarded as the equation of motion of closed string field theory at a possible vacuum.
description: 30 pages, 2 figures, v3:regularization improved
Kampilaster incurvatus Koehler 1920
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Valvatida
Asterinidae
Kampilaster
Kampilaster incurvatus

description: incurvatus Koehler, 1920, Kampylaster
Kampilaster incurvatus Koehler, 1920: 138, pl. 36, figs 4-7, 11, pl. 37, figs 1-3, pl. 66, fig. 8. — Clark 1993: 220.
CURRENT STATUS. — Kampilaster incurvatus Koehler, 1920.
TYPE MATERIAL. — Antarctic • 1 syntype; Australasian Antarctic expedition (1911-1914); 66°32’S, 141°39’E; depth 276 m; MNHN- IE-2014-448.
REMARK
Two syntypes in AM (J3581) (Rowe & Pawson 1977).
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on page 291, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
Cymatosirella taylorii Dabek & Witkowski 2013, sp. nov.
Creators: name: Dąbek, Przemysław
name: Sabbe, Koen
name: Witkowski, Andrzej
name: Archibald, Colin
name: Kurzydłowski, Krzyszof J.
name: Zgłobicka, Izabela
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Chromista
Ochrophyta
Bacillariophyceae
Cymatosirales
Cymatosiraceae
Cymatosirella
Cymatosirella taylorii

description: Cymatosirella taylorii Dąbek & Witkowski sp. nov. (Figs 44–51 [LM], Figs 52–58 [SEM])
Frustules rectangular in girdle view with undulated outline. Valves lanceolate to elliptical, 4–13 µm long and 1–4 µm wide. Central part of valve face and apices elevated. Valve surface areolated, with ca. 50 areolae in 10 µm. Areolae distributed over the whole valve face.
 Type: — SOUTH AFRICA. Western Cape Province: eastern part of Langebaan Lagoon, Saldanha Bay, sandy sediment from the intertidal sandbank (33°6’788’’S; 18°2’631’’E) collected on 19 th February 2011 by Dąbek, Witkowski & Archibald (SZCZ 17582, holotype!).
 Habitat: —The eastern part of Langebaan Lagoon is a shallow, sandy tidal pool. High and low tide occur twice a day. Sea surface water temperature exceeds 18° C
 Etymology: —Named after and dedicated to our friend and prominent South African diatomologist Dr. Jonathan Taylor (North-West University, Potchefstroom, South Africa).
 Observations: —The frustules are rectangular in girdle view with an undulated outline (Figs 44–47, 52). Cells are predominantly solitary, but occasionally two cells were found joined together (Fig. 44). The girdle is broad, and composed of numerous bands bearing one row of fine puncta (Fig. 52). The valves are lanceolate to elliptical, 4–13 µm long and 1–4 µm wide (Figs 48–51, 53). The central part of the valve face and apices are elevated (Figs 54, 56). The valve surface is strongly ornamented with areolae, ca. 50 in 10 µm (Figs 53–56). Near the central elevation, areolae are randomly distributed; further towards the apices they are arranged in longitudinal rows (Figs 53, 55, 56). Occlusions have not been observed. Each valve bears two ocelluli, composed of 7–10 porelli, with 1–2 central ones (Figs 57, 58). The ocelluli are surrounded by a hyaline ring of silica (Figs 53, 55, 57). No areolae occur near the ocelluli (Figs 53, 57). Spines were observed only rarely. Processes, pili, fascia nor pseudosepta have not been observed.
 Ecology and geography: — Cymatosirella taylorii has been found in only one sandy sample (SZCZ 17582, the holotype) from an intertidal sandbank in the eastern part of the Langebaan Lagoon. Only a dozen valves have been found. This species most probably belongs to the epipsammon.
description: Published as part of Dąbek, Przemysław, Sabbe, Koen, Witkowski, Andrzej, Archibald, Colin, Kurzydłowski, Krzyszof J. & Zgłobicka, Izabela, 2013, Cymatosirella Dąbek, Witkowski & Sabbe gen. nov., a new marine benthic diatom genus (Bacillariophyta) belonging to the family Cymatosiraceae, pp. 42-56 in Phytotaxa 121 (1) on page 50, DOI: 10.11646/phytotaxa.121.1.2, http://zenodo.org/record/5079466
Looking for Cosmological Alfven Waves in WMAP Data
Creators: name: Chen, Gang
name: Mukherjee, Pia
name: Kahniashvili, Tina
name: Ratra, Bharat
name: Wang, Yun
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: A primordial cosmological magnetic field induces and supports vorticity or Alfven waves, which in turn generate cosmic microwave background (CMB) anisotropies. A homogeneous primordial magnetic field with fixed direction induces correlations between the $a_{l-1,m}$ and $a_{l+1,m}$ multipole coefficients of the CMB temperature anisotropy field. We discuss the constraints that can be placed on the strength of such a primordial magnetic field using CMB anisotropy data from the WMAP experiment. We place 3 $σ$ upper limits on the strength of the magnetic field of $B < 15$ nG for vector perturbation spectral index $n=-5$ and $B<1.7$ nG for $n=-7$.
description: 14 pages, 3 figures, minor changes, references added, ApJ, in press
Pion Form Factor in the Light-Front
Creators: name: de Melo, J. P. B. C.
Publisher: name: arXiv
Year: 2004
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: The pion electromagnetic form factor is calculated with a light-front quark model. The "plus" and "minus" component of the electromagnetic current are used to calculate the electromagnetic form factor in the Breit frame with two models for the q\bar{q} vertex. The light front constituent quark models describes very well hadronic wave function for pseudo-scalar and vector particles. Symmetry problems arinsing in the light-front approach are solved by the pole dislocation method. The results are compared with new experimental data and with other quark models.
description: 4 pages,1 figure (eps), Latex,AIP style.To appear in the proceedings "IX Hadron Physics and VII Relativistic Aspects of Nuclear Physics: A Joint Meeting on QCD and QGP, Hadron Physics-RANP,2004,Angra dos Reis, Rio de Janeiro,Brazil.(some references are added and small mistakes are corrected.)
Fromia indica
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Valvatida
Goniasteridae
Fromia
Fromia indica

description: indicus Perrier, 1869, Scytaster
(Fig. 16)
Scytaster indicus Perrier, 1869: 63.
Fromia indica ‒ Clark 1993: 331.
CURRENT STATUS. — Fromia indica (Perrier, 1869).
TYPE MATERIAL. — India • holotype; Indian Seas; MNHN- IE-2014-187.
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on page 291, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
Additional file 8 of Repression of ZNFX1 by LncRNA ZFAS1 mediates tobacco-induced pulmonary carcinogenesis
Creators: name: Xi, Sichuan
name: Shan, Jigui
name: Wu, Xinwei
name: Wang, Haitao
name: Zhang, Mary R.
name: Oyetunji, Shakirat
name: Xu, Hong
name: Xiao, Zuoxiang
name: Tolunay, Tuana
name: Carr, Shamus R.
name: Hoang, Chuong D.
name: Schrump, David S.
Publisher: name: figshare
Year: 2025
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Supplementary material 8: S8. MeDIP analysis of DNA methylation profiles in the first CpG island proximal to the TSS of ZNFX1 in SAEC and Calu-6 cells; DAC decreases CSC- or ZFAS1-mediated DNA hypermethylation. UBE2C and H19ICR serve as negative and positive controls, respectively.
Towards a Framework for the Design, Implementation and Reporting of Methodology Scoping Reviews
Creators: name: Martin, Glen P.
name: Jenkins, David
name: Bull, Lucy
name: Sisk, Rose
name: Lin, Lijing
name: Hulme, William
name: Wilson, Anthony
name: Wang, Wenjuan
name: Barrowman, Michael
name: Sammut-Powell, Camilla
name: Pate, Alexander
name: Sperrin, Matthew
name: Peek, Niels
Publisher: name: arXiv
Year: 2020
Subjects: subject: Digital Libraries (cs.DL)
subject: FOS: Computer and information sciences

description: Background: In view of the growth of published papers, there is an increasing need for studies that summarise scientific research. An increasingly common review is a 'Methodology scoping review', which provides a summary of existing analytical methods, techniques and software, proposed or applied in research articles, which address an analytical problem or further an analytical approach. However, guidelines for their design, implementation and reporting are limited. Methods: Drawing on the experiences of the authors, which were consolidated through a series of face-to-face workshops, we summarise the challenges inherent in conducting a methodology scoping review and offer suggestions of best practice to promote future guideline development. Results: We identified three challenges of conducting a methodology scoping review. First, identification of search terms; one cannot usually define the search terms a priori and the language used for a particular method can vary across the literature. Second, the scope of the review requires careful consideration since new methodology is often not described (in full) within abstracts. Third, many new methods are motivated by a specific clinical question, where the methodology may only be documented in supplementary materials. We formulated several recommendations that build upon existing review guidelines. These recommendations ranged from an iterative approach to defining search terms through to screening and data extraction processes. Conclusion: Although methodology scoping reviews are an important aspect of research, there is currently a lack of guidelines to standardise their design, implementation and reporting. We recommend a wider discussion on this topic.
description: 22 pages, 2 tables
Additional file 1 of Dietary supplement of Yunkang 10 green tea and treadmill exercise ameliorate high fat diet induced metabolic syndrome of C57BL/6â€‰J mice
Creators: name: Yanzhong Zhang
name: Mingxing Gu
name: Ruru Wang
name: Menwan Li
name: Daxiang Li
name: Zhongwen Xie
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology

description: Additional file 1: Table S1. The treadmill exercise schedule for HFD mice during the experiment.
Is B1422+231 a Golden Lens?
Creators: name: Raychaudhury, Somak
name: Saha, Prasenjit
name: Williams, Liliya L. R.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: B1422+231 is a quadruply-imaged QSO with an exceptionally large lensing contribution from group galaxies other than the main lensing galaxy. We detect diffuse X-rays from the galaxy group in archival Chandra observations; the inferred temperature is consistent with the published velocity dispersion. We then explore the range of possible mass maps that would be consistent with the observed image positions, radio fluxes, and ellipticities. Under plausible but not very restrictive assumptions about the lensing galaxy, predicted time delays involving the faint fourth image are fairly well constrained around 7/h days.
description: 17 pages, 9 figures, to appear in the June/03 issue of AJ
Cymatosirella minutissima Dabek, Witkowski & Sabbe 2013, comb. nov.
Creators: name: Dąbek, Przemysław
name: Sabbe, Koen
name: Witkowski, Andrzej
name: Archibald, Colin
name: Kurzydłowski, Krzyszof J.
name: Zgłobicka, Izabela
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Chromista
Ochrophyta
Bacillariophyceae
Cymatosirales
Cymatosiraceae
Cymatosirella
Cymatosirella minutissima

description: Cymatosirella minutissima (Sabbe & Muylaert) Dąbek, Witkowski & Sabbe comb. nov.
 Basionym: Cymatosira minutissima Sabbe & Muylaert in Sabbe, K., Vanelslander, B., Ribeiro, L., Witkowski, A., Muylaert, K. & Vvyerman, W. (2010: 246, figs 17–20, 28, 31).
 For a detailed description of this species, see Sabbe et al. (2010).
description: Published as part of Dąbek, Przemysław, Sabbe, Koen, Witkowski, Andrzej, Archibald, Colin, Kurzydłowski, Krzyszof J. & Zgłobicka, Izabela, 2013, Cymatosirella Dąbek, Witkowski & Sabbe gen. nov., a new marine benthic diatom genus (Bacillariophyta) belonging to the family Cymatosiraceae, pp. 42-56 in Phytotaxa 121 (1) on page 50, DOI: 10.11646/phytotaxa.121.1.2, http://zenodo.org/record/5079466
Robustness to Capitalization Errors in Named Entity Recognition
Creators: name: Bodapati, Sravan
name: Yun, Hyokun
name: Al-Onaizan, Yaser
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computation and Language (cs.CL)
subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: Robustness to capitalization errors is a highly desirable characteristic of named entity recognizers, yet we find standard models for the task are surprisingly brittle to such noise. Existing methods to improve robustness to the noise completely discard given orthographic information, mwhich significantly degrades their performance on well-formed text. We propose a simple alternative approach based on data augmentation, which allows the model to \emph{learn} to utilize or ignore orthographic information depending on its usefulness in the context. It achieves competitive robustness to capitalization errors while making negligible compromise to its performance on well-formed text and significantly improving generalization power on noisy user-generated text. Our experiments clearly and consistently validate our claim across different types of machine learning models, languages, and dataset sizes.
description: Accepted to EMNLP 2019 Workshop : W-NUT 2019 5th Workshop on Noisy User Generated Text
Viable non-singular cosmic bounce in holonomy improved F(R) gravity endowed with a Lagrange multiplier
Creators: name: Elizalde, Emilio
name: Odintsov, S. D.
name: Paul, Tanmoy
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Matter and quasi-matter bounce scenarios are studied for an F(R) gravity model with holonomy corrections and a Lagrange multiplier, with a scale factor $a(t) = \left(a_0t^2 + 1 \right)^n$, where the Hubble parameter squared has a linear and a quadratic dependence on the effective energy density. Provided $n < 1/2$, it is shown that the primordial curvature perturbations are generated deeply into the contracting era, at large negative time, which makes the low-curvature limit a good approximation for calculating the perturbation power spectrum. Moreover, it is shown that, for $n$ within this range, the obtained cosmological quantities are fully compatible with the Planck constraints, and that the "low curvature limit" comes as a viable approximation to calculate the power spectra of both scalar and tensor perturbations. Using reconstruction techniques for F(R) gravity with the Lagrange multiplier, the precise form of the effective F(R) gravity is found, from which one determines the power spectra of scalar and tensor perturbations in such bouncing scenario. Correspondingly, the spectral index for curvature perturbations and the tensor to scalar ratio are obtained, and these values are successfully confronted with the latest Planck observations. Further, it is shown that both the weak and the null energy conditions are satisfied, thanks to the holonomy corrections performed in the theory--which are then proven to be necessary for achieving this goal. In fact, when approaching the bouncing era, the holonomy corrections become significant and play a crucial role in order to restore the energy conditions. Summing up, a cosmological bouncing scenario with the scale factor above and fulfilling the energy conditions can be adequately described by the F(R) model with a Lagrange multiplier and holonomy corrections, which prove to be very important.
description: EPJC accepted
Dermasterias imbricata
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Valvatida
Asteropseidae
Dermasterias
Dermasterias imbricata

description: inermis Perrier, 1875, Dermasterias
Dermasterias inermis Perrier, 1875: 282.
Dermasterias imbricata ‒ Clark 1993: 320.
CURRENT STATUS. — Dermasterias imbricata (Grube, 1857).
TYPE MATERIAL. — Unknown origin • holotype; Alexander Agassiz leg.; 1864; MNHN-IE-2014-466.
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on page 291, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
Additional file 9 of Repression of ZNFX1 by LncRNA ZFAS1 mediates tobacco-induced pulmonary carcinogenesis
Creators: name: Xi, Sichuan
name: Shan, Jigui
name: Wu, Xinwei
name: Wang, Haitao
name: Zhang, Mary R.
name: Oyetunji, Shakirat
name: Xu, Hong
name: Xiao, Zuoxiang
name: Tolunay, Tuana
name: Carr, Shamus R.
name: Hoang, Chuong D.
name: Schrump, David S.
Publisher: name: figshare
Year: 2025
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Supplementary material 9: S9. MSP analysis of DNA methylation profiles in the first CpG island proximal to the TSS of ZNFX1 in human lung cancers relative to paired adjacent normal lung tissues (A) as well as in lung cancer cell lines compared with NREC (B). CpG methylation levels in the first CpG island proximal to TSS of ZNFX1 (as evidenced by PCR products) were higher in tumors than corresponding normal lung tissues; DNA methylation in this region appeared to be higher in lung tumors from smokers relative to nonsmokers.
Dynamical-Friction Galaxy-Gas Coupling and Cluster Cooling Flows
Creators: name: El-Zant, Amr
name: Kim, Woong-Tae
name: Kamionkowski, Marc
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We revisit the notion that galaxy motions can efficiently heat intergalactic gas in the central regions of clusters through dynamical friction. For plausible values of the galaxy mass-to-light ratio, the heating rate is comparable to the cooling rate due to X-ray emission. Heating occurs only for supersonic galaxy motions, so the mechanism is self-regulating: it becomes efficient only when the gas sound speed is smaller than the galaxy velocity dispersion. We illustrate with the Perseus cluster, assuming a stellar mass-to-light ratio for galaxies in the very central region with the dark-matter contribution becoming comparable to this at some radius $r_s$. For $r_s \la 400 {\rm kpc} \sim 3 r_{\rm cool}$--corresponding to an average mass-to-light ratio of $\sim10$ inside that radius--the dynamical-friction coupling is strong enough to provide the required rate of gas heating. The measured sound speed is smaller than the galaxy velocity dispersion, as required by this mechanism. With this smaller gas temperature and the observed distribution of galaxies and gas, the energy reservoir in galactic motions is sufficient to sustain the required heating rate for the lifetime of the cluster. The galaxies also lose a smaller amount of energy through dynamical friction to the dark matter implying that non--cooling-flow clusters should have flat-cored dark-matter density distributions.
description: Six pages, 4 figs, Monthly Notices style
Additional file 2 of Dietary supplement of Yunkang 10 green tea and treadmill exercise ameliorate high fat diet induced metabolic syndrome of C57BL/6â€‰J mice
Creators: name: Yanzhong Zhang
name: Mingxing Gu
name: Ruru Wang
name: Menwan Li
name: Daxiang Li
name: Zhongwen Xie
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Additional file 2: Table S2. Primer sequences used for RT-PCR experiment.
Tectaria multicaudata var. amplissima S. Y. Dong 2013, comb. nov.
Creators: name: Ding, Hui-Hui
name: Chao, Yi-Shan
name: Dong, Shi-Yong
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Tracheophyta
Polypodiopsida
Polypodiales
Tectariaceae
Tectaria
Tectaria multicaudata
Tectaria multicaudata var. amplissima (holttum) s.y.dong

description: Tectaria multicaudata var. amplissima (Holttum) S.Y.Dong, comb. nov.
 Basionym:— Tectaria griffithii var. amplissima Holttum (1991b: 551). Type:— INDONESIA. Sumatra: Padang Panjang (Bukit Tilabung), 9 January 1913, Matthew s.n. (holotype K!).
 Note:—As Holttum (1991a, b) has pointed out, T. multicaudata var. amplissima has rather finely dissected fronds with as many as six pairs of pinnules on the basal pinnae. In contrast, the fronds are not so dissected with only one or rarely two pinnules on basal pinna in T. multicaudata var. multicaudata.
description: Published as part of Ding, Hui-Hui, Chao, Yi-Shan & Dong, Shi-Yong, 2013, Taxonomic novelties in the fern genus Tectaria (Tectariaceae), pp. 61-64 in Phytotaxa 122 (1) on page 63, DOI: 10.11646/phytotaxa.122.1.3, http://zenodo.org/record/5084930
Additional file 1 of Wound infection with Vibrio harveyi following a traumatic leg amputation after a motorboat propeller injury in Mallorca, Spain: a case report and review of literature
Creators: name: Brehm, Thomas
name: Berneking, Laura
name: Rohde, Holger
name: Chistner, Martin
name: Schlickewei, Carsten
name: Martins, Meike Sena
name: Schmiedel, Stefan
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Computational Biology

description: Additional file 1. Methods for Figure 2 and Figure 3.
Collinear splitting, parton evolution and the strange-quark asymmetry of the nucleon in NNLO QCD
Creators: name: Rodrigo, German
name: Catani, Stefano
name: de Florian, Daniel
name: Vogelsang, Werner
Publisher: name: arXiv
Year: 2004
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We consider the collinear limit of QCD amplitudes at one-loop order, and their factorization properties directly in colour space. These results apply to the multiple collinear limit of an arbitrary number of QCD partons, and are a basic ingredient in many higher-order computations. In particular, we discuss the triple collinear limit and its relation to flavour asymmetries in the QCD evolution of parton densities at three loops. As a phenomenological consequence of this new effect, and of the fact that the nucleon has non-vanishing quark valence densities, we study the perturbative generation of a strange--antistrange asymmetry $s(x)-\bar{s}(x)$ in the nucleon's sea.
description: 5 pages, 3 figures. Presented at Loops and Legs in Quantum Field Theory, April 25 -30, 2004. Zinnowitz, Germany
Fast Approximate Time-Delay Estimation in Ultrasound Elastography Using Principal Component Analysis
Creators: name: Zayed, Abdelrahman
name: Rivaz, Hassan
Publisher: name: arXiv
Year: 2019
Subjects: subject: Image and Video Processing (eess.IV)
subject: Machine Learning (cs.LG)
subject: Machine Learning (stat.ML)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Computer and information sciences

description: Time delay estimation (TDE) is a critical and challenging step in all ultrasound elastography methods. A growing number of TDE techniques require an approximate but robust and fast method to initialize solving for TDE. Herein, we present a fast method for calculating an approximate TDE between two radio frequency (RF) frames of ultrasound. Although this approximate TDE can be useful for several algorithms, we focus on GLobal Ultrasound Elastography (GLUE), which currently relies on Dynamic Programming (DP) to provide this approximate TDE. We exploit Principal Component Analysis (PCA) to find the general modes of deformation in quasi-static elastography, and therefore call our method PCA-GLUE. PCA-GLUE is a data-driven approach that learns a set of TDE principal components from a training database in real experiments. In the test phase, TDE is approximated as a weighted sum of these principal components. Our algorithm robustly estimates the weights from sparse feature matches, then passes the resulting displacement field to GLUE as initial estimates to perform a more accurate displacement estimation. PCA-GLUE is more than ten times faster than DP in estimation of the initial displacement field and yields similar results.
description: Accepted to be Published in 2019, 41th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Berlin, Germany
Additional file 1 of Congenital cystic adenomatoid malformations of the lung: an epithelial transcriptomic approach
Creators: name: Lezmi, Guillaume
name: Shamila Vibhushan
name: Bevilaqua, Claudia
name: Crapart, Nicolas
name: Cagnard, Nicolas
name: Khen-Dunlop, Naziha
name: Boyle-Freyssaut, Christine
name: Hadchouel, Alice
name: Delacourt, Christophe
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry

description: Additional file 1: Table S1. RIN and mRNA concentrations from samples used for transcriptome analysis. Table S2. List of downregulated genes in CCAM epithelium compared to control zones. These genes were selected using Ingenuity software with a filter p value ≤0.05 and a 1.2-fold alteration of probe expression. Table S3. List of upregulated genes in CCAM epithelium compared to control zones. These genes were selected using Ingenuity software with a filter p value ≤0.05 and a 1.2-fold alteration of probe expression. Table S4. Pathway analysis. Table S5. Upstream analysis.
Plutonaster agassizi subsp. notatus Sladen 1889
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Paxillosida
Astropectinidae
Plutonaster
Plutonaster agassizi
Plutonaster agassizi notatus sladen, 1889

description: inermis Perrier, 1885, Goniopecten
Goniopecten inermis Perrier, 1885: 71. Plutonaster agassizi notatus ‒ Clark & Downey 1992: 70.
CURRENT STATUS. — Plutonaster agassizi notatus Sladen, 1889.
TYPE LOCALITY. — Morocco • 5 syntypes; station 21; off Moroccan coast; Talisman expedition; 1883; 33°46’N, 11°22’W; depth 1319 m; MNHN-IE-2014-345.
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on pages 291-292, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
Closed Timelike Curves and Holography in Compact Plane Waves
Creators: name: Brecher, D.
name: DeBoer, P. A.
name: Page, D. C.
name: Rozali, M.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We discuss plane wave backgrounds of string theory and their relation to Goedel-like universes. This involves a twisted compactification along the direction of propagation of the wave, which induces closed timelike curves. We show, however, that no such curves are geodesic. The particle geodesics and the preferred holographic screens we find are qualitatively different from those in the Goedel-like universes. Of the two types of preferred screen, only one is suited to dimensional reduction and/or T-duality, and this provides a ``holographic protection'' of chronology. The other type of screen, relevant to an observer localized in all directions, is constructed both for the compact and non-compact plane waves, a result of possible independent interest. We comment on the consistency of field theory in such spaces, in which there are closed timelike (and null) curves but no closed timelike (or null) geodesics.
description: 21 pages, 3 figures, LaTeX
Additional file 4: of Psychosocial interventions for Alzheimerâ s disease cognitive symptoms: a Bayesian network meta-analysis
Creators: name: Duan, Yuting
name: Lu, Liming
name: Chen, Juexuan
name: Wu, Chunxiao
name: Liang, Jielin
name: Zheng, Yan
name: Wu, Jinjian
name: Rong, Peijing
name: Tang, Chunzhi
Publisher: name: figshare
Year: 2018
Subjects: Molecular Biology
Neuroscience
Biological Sciences not elsewhere classified
Mathematical Sciences not elsewhere classified
Marine Biology
Hematology
Computational Biology

description: Pair-wise meta-analysis of Compliance for Each Intervention. (DOCX 218 kb)