cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
The Effect of START-Play Intervention on Reaching-Related Exploratory Behaviors in Children with Neuromotor Delays: A Secondary Analysis of a Randomized Controlled Trial
Creators: name: Babik, Iryna
name: Cunha, Andrea B.
name: Choi, Dongho
name: Koziol, Natalie A.
name: Harbourne, Regina T.
name: Dusing, Stacey C.
name: McCoy, Sarah W.
name: Bovaird, James A.
name: Willett, Sandra L.
name: Lobo, Michele A.
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Medicine
subject: Neuroscience
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Children with neuromotor delays are at risk for reaching and object exploration impairments, which may negatively affect their cognitive development and daily activity performance. This study evaluated the effectiveness of the Sitting Together And Reaching To Play (START-Play) intervention on reaching-related exploratory behaviors in children with neuromotor delays. In this randomized controlled clinical trial, 112 children (Mean = 10.80, SD = 2.59 months old at baseline) with motor delays were randomly assigned to receive START-Play intervention or usual care-early intervention. Performance for ten reaching-related exploratory behaviors was assessed at baseline and 1.5, 3, 6, 12 months post-baseline. Piecewise linear mixed-effects modeling was used to evaluate short- and long-term effects of the intervention. Benefits of START-Play were observed for children with significant motor delays, but not for those with mild delays. START-Play was especially beneficial for children with significant motor delays who demonstrated early mastery in the reaching assessment (i.e., object contact ≥65% of the time within 3 months after baseline); these children showed greater improvements in manual, visual, and multimodal exploration, as well as intensity of exploration across time. START-Play advanced the performance of reaching-related exploratory behaviors in children with significant motor delays.
Enchodelus arcticus Nesterov 1976
Creators: name: Elshishka, Milka
name: Mladenov, Aleksandar
name: Altash, Stela
name: Álvarez-Ortega, Sergio
name: Peña-Santiago, Reyes
name: Peneva, Vlada
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Nematoda
Enoplea
Dorylaimida
Nordiidae
Enchodelus
Enchodelus arcticus

description: Enchodelus arcticus Nesterov, 1976
Enchodelus arcticus Nesterov, 1976; Nesterov (1976) BLR: https://doi.org/10.5281/zenodo.10849786
Enchodelus arcticus; Eliava and Eliashvily (1990): 52, 97 BLR: https://doi.org/10.5281/zenodo.11003031
Enchodelus arcticus; Peña-Santiago (2021 b): 206 BLR: https://doi.org/10.5281/zenodo. 11192261
Distribution
Enchodelus arcticus is recorded from the Palearctic, more specifically from Arctic Russian territories and high latitudes: Russia (type habitat: soil under lichens (Polar Urals) and rhizosphere of herbaceous plants (Yamal Peninsula) - Nesterov (1976)).
Notes
This is the only described species that lacks male ventromedian supplements, but it should be noted that just one male specimen has been recorded.
description: Published as part of Elshishka, Milka, Mladenov, Aleksandar, Altash, Stela, Álvarez-Ortega, Sergio, Peña-Santiago, Reyes & Peneva, Vlada, 2024, Cyber catalogue and revision of the nematode genus Enchodelus (Dorylaimida, Nordiidae), pp. e 126315 in Biodiversity Data Journal 12 on page e126315, DOI: 10.3897/BDJ.12.e126315
The Burden of COVID-19 on Caregivers of Children with Suspected Genetic Conditions: A Therapeutic Odyssey
Creators: name: Waltz, Margaret
name: Canter, Courtney
name: Bensen, Jeannette T.
name: Berg, Jonathan S.
name: Foreman, Ann Katherine M.
name: Grant, Tracey L.
name: Lich, Kristen Hassmiller
name: Navas, Angelo
name: O’Daniel, Julianne M.
name: Powell, Bradford C.
name: Rini, Christine M.
name: Staley, Brooke S.
name: Cadigan, R. Jean
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Children with disabilities and rare or undiagnosed conditions and their families have faced numerous hardships of living during the COVID-19 pandemic. For those with undiagnosed conditions, the diagnostic odyssey can be long, expensive, and marked by uncertainty. We, therefore, sought to understand whether and how COVID-19 impacted the trajectory of children’s care. We conducted semi-structured qualitative interviews with 25 caregivers who, prior to the pandemic, were on a diagnostic odyssey for their children. Most caregivers did not report any interruptions to their child’s diagnostic odyssey. The greatest impact was access to therapy services, including the suspension or loss of their child’s in-person therapeutic care and difficulties with virtual therapies. This therapy gap caused caregivers to fear that their children were not making progress. Although much has been written about the challenges of diagnostic odysseys for children and their families, this study illustrates the importance of expanding the focus of these studies to include therapeutic odysseys. Because therapeutic odysseys continue regardless of whether diagnoses are made, future research should investigate how to support caregivers through children’s therapies within and outside of the COVID-19 context.
Neutrino Mixing and Oscillations in Astrophysical Environments
Creators: name: Balantekin, A. B.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Experiment (nucl-ex)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: A brief review of the current status of neutrino mixing and oscillations in astrophysical environments, with particular emphasis on the Sun and core-collapse supernovae, is given. Implications of the existence of sterile states which mix with the active neutrinos are discussed.
description: Proceedings of the OMEG12 Conference, Tsukuba, Japan
Mortality among survivors of the Sept 11, 2001, World Trade Center disaster: results from the World Trade Center Health Registry cohort
Creators: name: Jordan, Hannah T.
name: Brackbill, Robert M.
name: Cone, James E.
name: Debchoudhury, Indira
name: Farfel, Mark R.
name: Greene, Carolyn M.
name: Hadler, James L.
name: Kennedy, Joseph
name: Li, Jiehui
name: Liff, Jonathan
name: Stayner, Leslie
name: Stellman, Steven D.
Publisher: name: Columbia University
Year: 2011
Subjects: Epidemiology

description: Background The Sept 11, 2001 (9/11) World Trade Center (WTC) disaster has been associated with several subacute and chronic health effects, but whether excess mortality after 9/11 has occurred is unknown. We tested whether excess mortality has occurred in people exposed to the WTC disaster. Methods In this observational cohort study, deaths occurring in 2003–09 in WTC Health Registry participants residing in New York City were identified through linkage to New York City vital records and the National Death Index. Eligible participants were rescue and recovery workers and volunteers; lower Manhattan area residents, workers, school staff and students; and commuters and passers-by on 9/11. Study participants were categorized as rescue and recovery workers (including volunteers), or non-rescue and non-recovery participants. Standardised mortality ratios (SMR) were calculated with New York City rates from 2000–09 as the reference. Within the cohort, proportional hazards were used to examine the relation between a three-tiered WTC-related exposure level (high, intermediate, or low) and total mortality. Findings We identified 156 deaths in 13 337 rescue and recovery workers and 634 deaths in 28 593 non-rescue and non-recovery participants. All-cause SMRs were significantly lower than that expected for rescue and recovery participants (SMR 0·45, 95% CI 0·38–0·53) and non-rescue and non-recovery participants (0·61, 0·56–0·66). No significantly increased SMRs for diseases of the respiratory system or heart, or for hematological malignancies were found. In non-rescue and non-recovery participants, both intermediate and high levels of WTC-related exposure were significantly associated with mortality when compared with low exposure (adjusted hazard ratio 1·22, 95% CI 1·01–1·48, for intermediate exposure and 1·56, 1·15–2·12, for high exposure). High levels of exposure in non-rescue and non-recovery individuals, when compared with low exposed non-rescue and non-recovery individuals, were associated with heart disease- related mortality (adjusted hazard ratio 2·06, 1·10–3·86). In rescue and recovery participants, level of WTC-related exposure was not significantly associated with all-cause mortality (adjusted hazard ratio 1·25, 95% CI 0·56–2·78, for high exposure and 1·03, 0·52–2·06, for intermediate exposure when compared with low exposure). Interpretation This exploratory study of mortality in a well defined cohort of 9/11 survivors provides a baseline for continued surveillance. Additional follow-up is needed to establish whether these associations persist and whether a similar association over time will occur in rescue and recovery participants.
The 3-dimensional oscillon equation
Creators: name: Di Plinio, Francesco
name: Duane, Gregory S.
name: Temam, Roger
Publisher: name: arXiv
Year: 2013
Subjects: subject: Analysis of PDEs (math.AP)
subject: Mathematical Physics (math-ph)
subject: Classical Analysis and ODEs (math.CA)
subject: FOS: Mathematics
subject: FOS: Physical sciences
subject: 37L30, 35B41

description: On a bounded three-dimensional smooth domain, we consider the generalized oscillon equation with Dirichlet boundary conditions, with time-dependent damping and time-dependent squared speed of propagation. Under structural assumptions on the damping and the speed of propagation, which include the relevant physical case of reheating phase of inflation, we establish the existence of a pullback global attractor of optimal regularity, and finite-dimensionality of the kernel sections.
Enchodelus babakicus Pedram, Nicknam, Guerrero, Ye & Robbins 2009
Creators: name: Elshishka, Milka
name: Mladenov, Aleksandar
name: Altash, Stela
name: Álvarez-Ortega, Sergio
name: Peña-Santiago, Reyes
name: Peneva, Vlada
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Nematoda
Enoplea
Dorylaimida
Nordiidae
Enchodelus
Enchodelus babakicus

description: Enchodelus babakicus Pedram, Niknam, Guerrero, Ye & Robbins, 2009
Enchodelus babakicus Pedram, Niknam, Guerrero, Ye & Robbins, 2009; Pedram et al. (2009) BLR: https://doi.org/10.5281/zenodo.8114779
Enchodelus babakicus; Peña-Santiago (2021 b): 206 BLR: https://doi.org/10.5281/zenodo. 11192263
Distribution
The species is a member of nematode fauna of Eastern Palearctic, found only in mountains of Iran (type habitat: rhizosphere of grasses from natural grasslands - Pedram et al. (2009)).
description: Published as part of Elshishka, Milka, Mladenov, Aleksandar, Altash, Stela, Álvarez-Ortega, Sergio, Peña-Santiago, Reyes & Peneva, Vlada, 2024, Cyber catalogue and revision of the nematode genus Enchodelus (Dorylaimida, Nordiidae), pp. e 126315 in Biodiversity Data Journal 12 on page e126315, DOI: 10.3897/BDJ.12.e126315
Accuracy of death certificate completion: the need for formalized physician training
Creators: name: Messite, Jacqueline
name: Stellman, Steven D.
Publisher: name: Columbia University
Year: 1996
Subjects: Medicine
Public health

description: Objective. To assess the extent to which accuracy of death certificate completion varies with level of physician training and experience. Design and Setting. In a classroom setting, subjects were presented with six written cases of hospital deaths adapted from materials from the National Center for Health Statistics and were asked to complete the cause-of-death section of the New York City certificate. Participants. A total of 12 practicing general internists, 21 internal medicine residents, and 35 senior medical students. Outcome measures. the underlying cause of death recorded by each participant was compared with the correct cause determined by a nosologist. Agreement and disagreement were classified as major or minor depending on concordance with the 17 International Classification of Disease categories. Results. Only one internist and five residents had received formal training in death certificate completion. The overall level of agreement between underlying cause of death reported by the three groups of participants and the correct cause was 56.9% for internists, 56.0% for residents, and 55.7% for medical students, although agreement varied with the type of case, ranging from 15% to 99%. Conclusions. If the misclassification observed in this pilot study were widespread, it would imply a substantial underreporting of mortality from both circulatory diseases and diabetes. These data strongly support the need to include training in death certificate completion as part of physician education.
Additional file 1 of Modulation of bioactive calcium phosphate micro/nanoparticle size and shape during in situ synthesis of photo-crosslinkable gelatin methacryloyl based nanocomposite hydrogels for 3D bioprinting and tissue engineering
Creators: name: Bhattacharyya, Amitava
name: Janarthanan, Gopinathan
name: Kim, Taeyang
name: Taheri, Shiva
name: Shin, Jisun
name: Kim, Jihyeon
name: Bae, Hyun Cheol
name: Han, Hyuk-Soo
name: Noh, Insup
Publisher: name: figshare
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Developmental Biology
subject: Plant Biology
subject: Computational Biology

description: Additional file 1: Figure 1. (a) viscosity at shear rate 1 s-1 for different gels with different UV exposure time; Viscosity changes with shear rate for different UV exposure time of different gels, (b) GelMA, (c) CNP + GelMA, (d) CNP (50%) GelMA, and (e) CNP GelMA. Figure 2. MTT assay with MC3T3 cells for the hydrogels and CNP samples, where control is only medium. Figure 3. Phase contrast images on Day 8 of AdMSC cells cultured on Hydrogel samples for RT PCR study; (a) Control, (b) GelMA, (c) CNP + GelMA, (d) CNP GelMA. Table 1. The primer sequences used for qRT-PCR
Explaining Thermodynamic-Like Behaviour In Terms of Epsilon-Ergodicity
Creators: name: Frigg, Roman
name: Werndl, Charlotte
Publisher: name: arXiv
Year: 2013
Subjects: subject: History and Philosophy of Physics (physics.hist-ph)
subject: Classical Physics (physics.class-ph)
subject: FOS: Physical sciences

description: Why do gases reach equilibrium when left to themselves? The canonical answer, originally proffered by Boltzmann, is that the systems have to be ergodic. This answer is now widely regarded as flawed. We argue that some of the main objections, in particular, arguments based on the KAM-theorem and the Markus-Meyer theorem, are beside the point. We then argue that something close to Boltzmann's proposal is true: gases behave thermodynamic-like if they are epsilon-ergodic, i.e., ergodic on the phase space except for a small region of measure epsilon. This answer is promising because there is evidence that relevant systems are epsilon-ergodic.
title: Confinement II
Creators: name: Meise, Helga
Publisher: name: Center for Advanced Studies LMU
Year: 2020
Subjects: subject: 800 Literature
subject: FOS: Languages and literature

description: Ces temps-ci, le reconfinement qui me fait penser à la comédie « Groundhog Day » / « Un jour sans fin », les déplacements ne sont autorisés que dans un rayon d’un kilomètre du domicile, et limités à une heure par jour
Curvaton Dynamics Revisited
Creators: name: Mukaida, Kyohei
name: Nakayama, Kazunori
name: Takimoto, Masahiro
Publisher: name: arXiv
Year: 2014
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We revisit the dynamics of the curvaton in detail taking account of effects from thermal environment, effective potential and decay/dissipation rate for general field values and couplings. We also consider the curvature perturbation generated through combinations of various effects: large scale modulation of the oscillation epoch, the effective dissipation rate and the timing at which the equation of state changes. In particular, we find that it tends to be difficult to explain the observed curvature perturbation by the curvaton mechanism without producing too large non-Gaussianity if the curvaton energy density is dissipated through thermal effects. Therefore, the interaction between the curvaton and light elements in the thermal plasma should be suppressed in order for the curvaton to survive the thermal dissipation.
description: 29 pages, 3 figures
LHC physics of extra gauge bosons in the 4D Composite Higgs Model
Creators: name: Barducci, D.
name: Belyaev, A.
name: De Curtis, S.
name: Moretti, S.
name: Pruna, G. M.
Publisher: name: arXiv
Year: 2013
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We study the phenomenology of both the Neutral Current (NC) and Charged Current (CC) Drell-Yan (DY) processes at the Large Hadron Collider (LHC) within a 4 Dimensional realization of a Composite Higgs model with partial compositness by estimating the integrated and differential event rates and taking into account the possible impact of the extra fermions present in the spectrum. We show that, in certain regions of the parameters space, the multiple neutral resonances present in the model can be distinguishable and experimentally accessible in the invariant or transverse mass distributions.
description: Conference proceeding, LCHP 2013, 13-18 May 2013, Bacelona. 3 pages, 2 figures
Meta-analysis of genomic regions in epigenome-wide association studies
Creators: name: Lanyu  Zhang
name: Silva, Tiago Chedraoui
name: Gomez, Lissette
name: Odom, Gabriel
name: Wang, Lily
Publisher: name: F1000 Research Limited
Year: 2020

description: Meta-analysis is a commonly used strategy for synthesizing information to identify consistent effects in multiple studies. Epigenome-wide association studies (EWAS) examine association between DNA methylation markers in the epigenome with phenotypes or diseases. Biologically, it has been observed that methylation levels are strongly correlated across the genome and methylation often occurs as a regional phenomenon. Statistically, while effect size in a single CpG might be small, by borrowing information from all the CpGs within a region, statistical test for regions can more effectively leverage information within the region to increase sensitivity and specificity. However, to date, while a number of tools have been developed to identify differentially methylated regions within a single study, most meta-analyses have been performed on individual CpGs. This is because significant regions identified in different datasets are data dependent and typically vary across datasets. DMR (differentially methylated regions) identification methods typically start with computing p-values for differential methylation at individual CpG sites, and then scan the genome to identify regions with adjacent low p-values. Therefore, DMRs identified by these methods can be overlapping but often vary in different studies. In addition, the analysis results typically only include information on DMRs, the lack of information on the rest of the genome, which might include regions with moderate changes, albeit not reaching statistical significance, makes it difficult for meta-analysis. To address this challenge, we introduce two analyses pipelines for conducting meta-analysis for genomic regions in EWAS, using comb-p software and coMethDMR R package. We illustrate, compare and contrast the results of these two approaches by performing meta-analysis for several Alzheimer’s Disease brain samples datasets.
Numerical simulation of the localization of elastic waves in two- and three-dimensional heterogeneous media
Creators: name: Sepehrinia, Reza
name: Tabar, M. Reza Rahimi
name: Sahimi, Muhammad
Publisher: name: arXiv
Year: 2013
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: Localization of elastic waves in two-dimensional (2D) and three-dimensional (3D) media with random distributions of the Lamé coefficients (the shear and bulk moduli) is studied, using extensive numerical simulations. We compute the frequency-dependence of the minimum positive Lyapunov exponent $γ$ (the inverse of the localization length) using the transfer-matrix method, the density of states utilizing the force-oscillator method, and the energy-level statistics of the media. The results indicate that all the states may be localized in the 2D media, up to the disorder width and the smallest frequencies considered, although the numerical results also hint at the possibility that there might a small range of the allowed frequencies over which a mobility edge might exist. In the 3D media, however, most of the states are extended, with only a small part of the spectrum in the upper band tail that contains localized states, even if the Lamé coefficients are randomly distributed. Thus, the 3D heterogeneous media still possess a mobility edge. If both Lamé coefficients vary spatially in the 3D medium, the localization length $Λ$ follows a power law near the mobility edge, $Λ\sim(Ω-Ω_c)^{-ν}$, where $Ω_c$ is the critical frequency. The numerical simulation yields, $ν\simeq 1.89\pm 0.17$, significantly larger than the numerical estimate, $ν\simeq 1.57\pm 0.01$, and $ν=3/2$, which was recently derived by a semiclassical theory for the 3D Anderson model of electron localization...
description: 10 pages, 9 figures
Enchodelus brasiliensis Meyl 1957
Creators: name: Elshishka, Milka
name: Mladenov, Aleksandar
name: Altash, Stela
name: Álvarez-Ortega, Sergio
name: Peña-Santiago, Reyes
name: Peneva, Vlada
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Nematoda
Enoplea
Dorylaimida
Nordiidae
Enchodelus
Enchodelus brasiliensis

description: Enchodelus brasiliensis Meyl, 1957
Enchodelus brasiliensis Meyl, 1957; Meyl (1957) BLR: https://doi.org/10.5281/zenodo.10997965
Enchodelus brasiliensis; Eliava and Eliashvily (1990): 53, 97 BLR: https://doi.org/10.5281/zenodo.11003031
Enchodelus brasiliensis; Peña-Santiago (2021 b): 206 BLR: https://doi.org/10.5281/zenodo. 11191887
Distribution
This is the only member of genus Enchodelus of Neotropical nematode fauna: Brazil (type habitat: wet sand - Meyl (1957)).
Taxon discussion
This species is the only representative of genus recorded from the Southern Hemisphere (Brazil), an interesting biogeographical singularity. Originally described on the basis of one female and three male specimens, Andrássy (1971) transferred it to Rhyssocolpus, but it better fits the Enchodelus diagnosis (very slender odontostyle, odontophore with flange-like extensions, short pharyngeal bulb, convex conoid tail).
description: Published as part of Elshishka, Milka, Mladenov, Aleksandar, Altash, Stela, Álvarez-Ortega, Sergio, Peña-Santiago, Reyes & Peneva, Vlada, 2024, Cyber catalogue and revision of the nematode genus Enchodelus (Dorylaimida, Nordiidae), pp. e 126315 in Biodiversity Data Journal 12 on page e126315, DOI: 10.3897/BDJ.12.e126315
Photometric Metallicities in Bootes I
Creators: name: Hughes, J.
name: Wallerstein, G.
name: Dotter, A.
name: Geisler, D.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We present new Stromgren and Washington data sets for the Bootes I dwarf galaxy, and combine them with the available SDSS photometry. The goal of this project is to refine a ground-based, practical, accurate method to determine age and metallicity for individual stars in Bootes I that can be selected in an unbiased imaging survey, without having to take spectra. We produce photometric metallicities from Stromgren and Washington photometry, for stellar systems with a range of $-1.0>[Fe/H]>-3.5$. To avoid the decrease in sensitivity of the Stromgren metallicity index on the lower red-giant branch, we replace the Stromgren v-filter with the broader Washington C-filter; we find that $CT_1by$ is the most successful filter combination, for individual stars with $[Fe/H]
description: 24 pages, 18 figures, accepted by MNRAS
Supplemental Tables
Creators: name: Dickey, Aaron
name: Workman, Aspen
Publisher: name: figshare
Year: 2020
Subjects: subject: 70205 Animal Protection (Pests and Pathogens)
subject: FOS: Animal and dairy science
subject: 60408 Genomics
subject: FOS: Biological sciences
subject: 70712 Veterinary Virology
subject: FOS: Veterinary sciences

description: Supplementary Table 1: Four hundred and thirteen diagnostic SNPs distinguishing small ruminant lentivirus (SRLV) A2 subgroupsSupplementary Table 2: Seventy-three genomic regions indicative of dual subgroup infection among 9 SRLV A2 consensus genomesSupplementary Table 3: Within-host amino acid variability (functional viral quasispecies) at 106 subgroup diagnostic loci
To see additional records, polymorphisms, footnotes, annotations and color coding, download the original file
Superconducting qubit as a probe of quantum fluctuations in a nonlinear resonator
Creators: name: Boissonneault, Maxime
name: Doherty, A. C.
name: Ong, F. R.
name: Bertet, P.
name: Vion, D.
name: Esteve, D.
name: Blais, A.
Publisher: name: arXiv
Year: 2013
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: In addition to their central role in quantum information processing, qubits have proven to be useful tools in a range of other applications such as enhanced quantum sensing and as spectrometers of quantum noise. Here we show that a superconducting qubit strongly coupled to a nonlinear resonator can act as a probe of quantum fluctuations of the intra-resonator field. Building on previous work [M. Boissoneault et al. Phys. Rev. A 85, 022305 (2012)], we derive an effective master equation for the qubit which takes into account squeezing of the resonator field. We show how sidebands in the qubit excitation spectrum that are predicted by this model can reveal information about squeezing and quantum heating. The main results of this paper have already been successfully compared to experimental data [F. R. Ong et al. Phys. Rev. Lett. 110, 047001 (2013)] and we present here the details of the derivations.
description: 12 pages, 5 figures
Heart disease among adults exposed to the September 11, 2001 World Trade Center disaster: Results from the World Trade Center Health Registry
Creators: name: Jordan, Hannah T.
name: Miller-Archie, Sara A.
name: Cone, James E.
name: Morabia, Alfredo
name: Stellman, Steven D.
Publisher: name: Columbia University
Year: 2011
Subjects: Epidemiology

description: Objective. To examine associations between 9/11-related exposures, posttraumatic stress disorder (PTSD), and subsequent development of heart disease (HD). Methods. We prospectively followed 39,324 WTC Health Registry participants aged ≥18 on 9/11 for an average of 2.9 years. HD was defined as self-reported physician-diagnosed angina, heart attack, and/or other HD reported between study enrollment (2003–2004) and a follow-up survey (2006–2008) in enrollees without previous HD. A PTSD Checklist (PCL) score ≥ 44 was considered PTSD. We calculated adjusted hazard ratios (AHR) and 95% confidence intervals (CI) to examine relationships between 9/11-related exposures and HD. Results. We identified 1162 HD cases (381 women, 781 men). In women, intense dust cloud exposure was significantly associated with HD (AHR 1.28, 95% CI 1.02–1.61). Injury on 9/11 was significantly associated with HD in women (AHR 1.46, 95% CI 1.19–1.79) and in men (AHR 1.33, 95% CI 1.15–1.53). Participants with PTSD at enrollment had an elevated HD risk (AHR 1.68, 95% CI 1.33–2.12 in women, AHR 1.62, 95% CI 1.34–1.96 in men). A dose–response relationship was observed between PCL score and HD risk. Conclusion. This exploratory study suggests that exposure to the WTC dust cloud, injury on 9/11 and 9/ 11-related PTSD may be risk factors for HD.
Additional file 1 of Discharge locations after hospitalizations involving opioid use disorder among medicare beneficiaries
Creators: name: Moyo, Patience
name: Eliot, Melissa
name: Shah, Asghar
name: Goodyear, Kimberly
name: Jutkowitz, Eric
name: Thomas, Kali
name: Zullo, Andrew R.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 60506 Virology
subject: Computational Biology

description: Additional file 1: Appendix S1. Sample selection flow diagram indicating hospital discharge location following OUD-related hospitalizations. Appendix S2. Percentages of select primary diagnoses identified during OUD-related hospitalizations in Medicare during 2016-2018. Appendix S3. Demographic, comorbidity and health care utilization characteristics of opioid use disorder-related hospitalizations among older adult (age ≥65 years) fee-for-service Medicare beneficiaries, 2016-18. Appendix S4. Demographic, comorbidity and health care utilization characteristics of opioid use disorder-related hospitalizations among younger (age <65 years) fee-for-service Medicare beneficiaries, 2016-18.
Mortality by relative weight and exercise
Creators: name: Garfinkel, Lawrence
name: Stellman, Steven D.
Publisher: name: Columbia University
Year: 1988
Subjects: Epidemiology

description: Mortality in relation to relative weight and exercise was analyzed from data collected in the first 2 years of the American Cancer Society's Cancer Prevention Study 11. It included data on 868,620 persons who had no history of cancer, heart disease, or stroke and who were not sick at the start of the study. Standardized mortality ratios (SMR) were 187 for men who were 20% or more underweight and 187 for men who were 40% or more overweight. Comparable SMR in women were 186 and 178. Current smokers had considerably higher SMR than nonsmokers for all causes of death and cancer deaths at each relative weight category. Degree of exercise reported by subjects was inversely related to mortality, independent of smoking habits. Subjects who exercised heavily and died of cancer of the lung, colon-rectum, and pancreas had 20% to 37% higher SMR than men and women who reported moderate exercise.
Enchodelus carpaticus Ciobanu, Popovici, Guerrero & Pena-Santiago 2010
Creators: name: Elshishka, Milka
name: Mladenov, Aleksandar
name: Altash, Stela
name: Álvarez-Ortega, Sergio
name: Peña-Santiago, Reyes
name: Peneva, Vlada
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Nematoda
Enoplea
Dorylaimida
Nordiidae
Enchodelus
Enchodelus carpaticus

description: Enchodelus carpaticus Ciobanu, Popovici, Guerrero & Peña-Santiago, 2010
Enchodelus carpaticus Ciobanu, Popovici, Guerrero & Peña-Santiago, 2010; Ciobanu et al. (2010 a) BLR: https://doi.org/10.5281/zenodo.8111703
Enchodelus carpaticus; Peña-Santiago (2021 b): 206 BLR: https://doi.org/10.5281/zenodo. 11192267
Distribution
This species is recorded in the Palearctic, with only one record from its type locality: Romania (type habitat: mountain grassland, 980 m a. s. l. - Ciobanu et al. (2010 a)).
description: Published as part of Elshishka, Milka, Mladenov, Aleksandar, Altash, Stela, Álvarez-Ortega, Sergio, Peña-Santiago, Reyes & Peneva, Vlada, 2024, Cyber catalogue and revision of the nematode genus Enchodelus (Dorylaimida, Nordiidae), pp. e 126315 in Biodiversity Data Journal 12 on page e126315, DOI: 10.3897/BDJ.12.e126315
Symmetry energy, neutron skin, and neutron star radius from chiral effective field theory interactions
Creators: name: Hebeler, K.
name: Schwenk, A.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We discuss neutron matter calculations based on chiral effective field theory interactions and their predictions for the symmetry energy, the neutron skin of 208 Pb, and for the radius of neutron stars.
description: 7 pages, 8 figures, short review article, to appear in EPJA special issue on symmetry energy
ToxicoGx: R package for analysis of Large Scale Toxicogenomics Datasets
Creators: name: Nair, Sisira Kadambat
name: Yoo, Esther
name: Eeles, Christopher
name: Tang, Amy
name: Nehme  El-Hachem
name: Smirnov, Petr
name: Haibe-Kains, Benjamin
Publisher: name: F1000 Research Limited
Year: 2020

description: An open-source R package to access, curate, visualize and analyze toxicogenomics data. ToxicoGx is available on Bioconductor : http://bioconductor.org/packages/devel/bioc/html/ToxicoGx.html 
Unmet mental health care need 10-11 years after the 9/11 terrorist attacks: results from 2011-2012 World Trade Center Health Registry
Creators: name: Ghuman, Sharon J.
name: Brackbill, Robert M.
name: Stellman, Steven D.
name: Farfel, Mark R.
name: Cone, James E.
Publisher: name: Columbia University
Year: 2014
Subjects: Epidemiology
Public health

description: Background: There is little current information about the unmet mental health care need (UMHCN) and reasons for it among those exposed to the World Trade Center (WTC) terrorist attacks. The purpose of this study was to assess the level of UMHCN among symptomatic individuals enrolled in the WTC Health Registry (WTCHR) in 2011–2012, and to analyze the relationship between UMHCN due to attitudinal, cost, and access factors and mental health symptom severity, mental health care utilization, health insurance availability, and social support. Methods: The WTCHR is a prospective cohort study of individuals with reported exposure to the 2001 WTC attacks. This study used data from 9,803 adults who completed the 2003–2004 (Wave 1) and 2011–2012 (Wave 3) surveys and had posttraumatic stress disorder (PTSD) or depression in 2011–2012. We estimated logistic regression models relating perceived attitudinal, cost and access barriers to symptom severity, health care utilization, a lack of health insurance, and social support after adjusting for sociodemographic characteristics. Results: Slightly more than one-third (34.2%) of study participants reported an UMHCN. Symptom severity was a strong predictor of UMHCN due to attitudinal and perceived cost and access reasons. Attitudinal UMHCN was common among those not using mental health services, particularly those with relatively severe mental health symptoms. Cost-related UMHCN was significantly associated with a lack of health insurance but not service usage. Access-related barriers were significantly more common among those who did not use any mental health services. A higher level of social support served as an important buffer against cost and access UMHCN. Conclusions: A significant proportion of individuals exposed to the WTC attacks with depression or PTSD 10 years later reported an UMHCN, and individuals with more severe and disabling conditions, those who lacked health insurance, and those with low levels of social support were particularly vulnerable.
Mean-field yrast spectrum of a two-component Bose gas in ring geometry: persistent currents at higher angular momentum
Creators: name: Wu, Zhigang
name: Zaremba, Eugene
Publisher: name: arXiv
Year: 2013
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: FOS: Physical sciences

description: We use analytic soliton solutions of a two-component Bose gas in ring geometry to analyze the mean-field yrast spectrum of the system. We find that the spectrum exhibits a surprisingly rich structure as a result of the interplay of interparticle interactions and population imbalance. We discuss the implication of these results in regard to the possibility of persistent currents at higher angular momenta.
description: 13 pages, 12 figures
Dynamically generated darkness in the Dicke model
Creators: name: Tomka, Michael
name: Baeriswyl, Dionys
name: Gritsev, Vladimir
Publisher: name: arXiv
Year: 2013
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We study the dynamics of a driven Dicke model, where the collective spin is rotated with a constant velocity around a fixed axis. The time evolution of the mean photon number and of the atomic inversion is calculated using, on the one hand, a numerical technique for the quantum dynamics of a small number of two-level atoms, on the other hand, time-dependent mean-field theory for the limit of a large number of atoms. We observe a reduction of the mean photon number as compared to its equilibrium value. This dynamically generated darkness is particularly pronounced slightly above the transition to a superradiant phase. We attribute the effect to a slowing down of the motion in the classical limit of a large ensemble and to an interplay of dynamic and geometric phases in the quantum case.
description: 15 pages, 14 figures
Enchodelus decraemerae Pourjam, Pedram, Vinciguerra & Robbins 2010
Creators: name: Elshishka, Milka
name: Mladenov, Aleksandar
name: Altash, Stela
name: Álvarez-Ortega, Sergio
name: Peña-Santiago, Reyes
name: Peneva, Vlada
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Nematoda
Enoplea
Dorylaimida
Nordiidae
Enchodelus
Enchodelus decraemerae

description: Enchodelus decraemerae Pourjam, Pedram, Vinciguerra & Robbins, 2010
Enchodelus decraemerae Pourjam, Pedram, Vinciguerra & Robbins, 2010; Pourjam et al. (2010) BLR: https://doi.org/10.5281/zenodo.10716290
Enchodelus decraemerae; Peña-Santiago (2021 b): 206 BLR: https://doi.org/10.5281/zenodo. 11192271
Distribution
The species is a member of nematode fauna of West Palearctic: Iran (type habitat: rhizosphere of mosses on rocks - Pourjam et al. (2010)).
Taxon discussion
According to Pourjam et al. (2010), this species belongs to a group of species with very long odontostyle (61-67 μm) and conical tail, which Ahmad and Jairajpuri (1980) ascribed to the subgenus Nepalus, now regarded identical with Heterodorus. Nevertheless, several remarkable traits (distinct flanges at odontophore base, tripartite uterus, 10-12 irregularly-spaced ventromedian supplements without hiatus) supports its inclusion in Enchodelus, although the conical tail with rounded tip is atypical in the genus. Thus, it is provisionally retained under Enchodelus, but further study based also on molecular data would elucidate its taxonomic status.
description: Published as part of Elshishka, Milka, Mladenov, Aleksandar, Altash, Stela, Álvarez-Ortega, Sergio, Peña-Santiago, Reyes & Peneva, Vlada, 2024, Cyber catalogue and revision of the nematode genus Enchodelus (Dorylaimida, Nordiidae), pp. e 126315 in Biodiversity Data Journal 12 on page e126315, DOI: 10.3897/BDJ.12.e126315
Additional file 1 of Barriers to effective management of primary postpartum haemorrhage following in-hospital births in northwest Ethiopia: healthcare providers’ views using a qualitative approach
Creators: name: Bewket, Tiruneh
name: Ensieh, Fooladi
name: Virginia, Plummer
name: Gayle, McLelland
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Cell Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics

description: Supplementary Material 1
A practical GMSB model for explaining the muon (g-2) with gauge coupling unification
Creators: name: Bhattacharyya, Gautam
name: Bhattacherjee, Biplob
name: Yanagida, Tsutomu T.
name: Yokozaki, Norimi
Publisher: name: arXiv
Year: 2013
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We present a gauge mediated supersymmetry breaking model having weak SU(2) triplet, color SU(3) octet and SU(5) 5-plet messengers, that can simultaneously explain the muon $(g-2)$ data within 1$σ$ and the observed Higgs boson mass of 125 GeV. Gauge coupling unification is nontrivially maintained. Most of the parameter space satisfying both is accessible to the 14 TeV LHC. The lighter of the two staus weighs around (100-200) GeV, which can be a potential target of the ILC.
description: 6 pages, 5 eps figures
Additional file 1 of Adaptations of evidence-based trauma-focused interventions for children and adolescents: a systematic review
Creators: name: Lange, Brittany C. L.
name: Nelson, Ashley
name: Lang, Jason M.
name: Stirman, Shannon Wiltsey
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 1. PRISMA 2020 Checklist.
$B_{s,d}^0 \to μ\barμ$ and $B\to X_sγ$ in the R-parity violating MSSM
Creators: name: Dreiner, H. K.
name: Nickel, K.
name: Staub, F.
Publisher: name: arXiv
Year: 2013
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The recent measurements of $B_s^0 \to μ\barμ$ decay candidates at the LHC consistent with the standard model rate, and the improving upper limits for $B_d^0 \to μ\barμ$ can strongly constrain beyond the standard model physics. For example, in supersymmetric models with broken R-parity (RpV), they restrict the size of the new couplings. We use the combination of the public software packages SARAH and SPheno to derive new bounds on several combinations of R-parity violating couplings. We improve existing limits for the couplings which open tree-level decay channels and state new limits for combinations which induce loop contributions. This is the first study which performs a full one-loop analysis of these observables in the context of R-parity violation. It turns out that at one-loop despite the strong experimental limits only combinations of R-parity violating couplings are constrained which include third generation fermions. We compare our limits with those obtained via $B\to X_sγ$ and discuss the differences.
description: 26 pages, 10 figures
Abl Family Tyrosine Kinases Are Essential for Basement Membrane Integrity and Cortical Lamination in the Cerebellum
Creators: name: Qiu, Zhaozhu
name: Cang, Yong
name: Goff, Stephen P.
Publisher: name: Columbia University
Year: 2010
Subjects: subject: Molecular biology
subject: Neurosciences
subject: FOS: Clinical medicine
subject: Microbiology
subject: FOS: Biological sciences

description: The Abl family nonreceptor tyrosine kinases, consisting of closely related Abl and Arg (Abl-related gene), play essential roles in mouse neurulation, but their functions in the subsequent development of CNS are poorly understood. Here, we show that conditional deletion of Abl in precursors of neurons and glia on an Arg knock-out background leads to striking cerebellar malformations, including defects in anterior cerebellar morphogenesis, granule cell ectopia, and hypoplasia. Time course analyses reveal that the abnormal anterior cerebellar foliation results from local disruptions of the basement membrane (BM) located between radial glial endfeet and the meninges during embryonic cerebellar development. Granule cell ectopia and hypoplasia are also associated with the breaches in the BM and abnormal Bergmann glial networks during postnatal cerebellar development. In vitro culture experiments indicate that Abl/Arg-deficient granule cells can interact with glial processes and proliferate normally in response to sonic hedgehog compared to cells isolated from control mice. Consistent with these findings, selective ablation of Abl family kinases in cerebellar granule cells alone does not cause any abnormality, suggesting that deletion of Abl/Arg from glia is likely required for the mutant phenotype. Together, these results provide compelling evidence that Abl and Arg play key redundant roles in BM maintenance and cortical lamination in the cerebellum.
Solvation Effects on Hole Mobility in the Poly G/Poly C Duplex
Creators: name: Lakhno, V. D.
name: Fialko, N. S.
Publisher: name: arXiv
Year: 2013
Subjects: subject: Biological Physics (physics.bio-ph)
subject: Soft Condensed Matter (cond-mat.soft)
subject: Biomolecules (q-bio.BM)
subject: FOS: Physical sciences
subject: FOS: Biological sciences

description: Theoretical calculations of solvation contribution to hole energy in a polynucleotide chain give very low hole mobility values at zero temperature, μ< 10^{-3} cm^2/(V s). We calculated hole mobility at physiological temperature for the Poly G/Poly C DNA duplex, which gave substantially larger mobility values. Mobility over the temperature range 20-400 K was calculated. Taking stacking interaction into account substantially increased hole mobility.
ScPipe-ATAC: A flexible R/Bioconductor module for pre-processing platform-independent scATAC-Seq data
Creators: name: Amarasinghe, Shani L.
name: Luyi Tian
name: Jabbari, Jafar S.
name: Ritchie, Matthew E.
Publisher: name: F1000 Research Limited
Year: 2020

description: Single-cell Assay for Transposase Accessible Chromatin using sequencing (scATAC-seq) enables genome-wide profiling of chromatin accessibility that can be used to improve gene expression modeling at single-cell resolution. scATAC-seq data are intrinsically sparse since the signals detected at a genomic position are limited by DNA copy number, thereby making it difficult to discriminate signals from noise. Therefore, thorough and clear pre-processing steps are needed prior to downstream analyses. Furthermore, these pre-processing steps need to be sufficiently adaptable to user requirements. Currently available scATAC-seq pre-processing tools are either not fully R-based or have limited flexibility. We have extended scPipe, our current pre-processing tool for single-cell RNA data, to be able to process scATAC-seq data from a variety of different protocols. We take the power and flexibility of the R environment and create a workflow that combines multiple Bioconductor packages to achieve this. We also evaluated the performance of scPipe’s scATAC-Seq module on an in-house benchmarking dataset to assess its speed and ability to recover known population structure.
Enchodelus distinctus Ahmad & Jairajpuri 1980
Creators: name: Elshishka, Milka
name: Mladenov, Aleksandar
name: Altash, Stela
name: Álvarez-Ortega, Sergio
name: Peña-Santiago, Reyes
name: Peneva, Vlada
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Nematoda
Enoplea
Dorylaimida
Nordiidae
Enchodelus
Enchodelus distinctus

description: Enchodelus distinctus Ahmad & Jairajpuri, 1980
Enchodelus (Enchodelus) distinctus Ahmad & Jairajpuri, 1980; Ahmad and Jairajpuri (1980) BLR: https://doi.org/10.5281/zenodo.8144946
Enchodelus distinctus; Eliava and Eliashvily (1990): 56, 98 BLR: https://doi.org/10.5281/zenodo.11003031
Enchodelus distinctus; Peña-Santiago (2021 b): 206 BLR: https://doi.org/10.5281/zenodo.11194433
Distribution
This species has been recorded only from Indomalayan region: India (type habitat: soil around roots of unidentified grasses, 4400 m a. s. l. - Ahmad and Jairajpuri (1980)).
Taxon discussion
This species is only known to occur in India and was described on the basis of a single female with bipartite uterus.
description: Published as part of Elshishka, Milka, Mladenov, Aleksandar, Altash, Stela, Álvarez-Ortega, Sergio, Peña-Santiago, Reyes & Peneva, Vlada, 2024, Cyber catalogue and revision of the nematode genus Enchodelus (Dorylaimida, Nordiidae), pp. e 126315 in Biodiversity Data Journal 12 on page e126315, DOI: 10.3897/BDJ.12.e126315