cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
SF3B1 promotes tumor malignancy through splicing-independent co-activation of HIF1α
Creators: name: Simmler, Patrik T.
name: Cortijo, Cédric
name: Koch, Lisa M.
name: Galliker, Patricia
name: Angori, Silvia
name: Bolck, Hella A.
name: Mueller, Christina
name: Vukolic, Ana
name: Mirtschink, Peter
name: Christinat, Yann
name: Davidson, Natalie R.
name: Lehmann, Kjong-Van
name: Pellegrini, Giovanni
name: Pauli, Chantal
name: Lenggenhager, Daniela
name: Guccini, Ilaria
name: Ringel, Till
name: Hirt, Christian
name: Rätsch, Gunnar
name: Moch, Holger
name: Stoffel, Markus
name: Schwank, Gerald
Publisher: name: ETH Zurich
Year: 2020
Subjects: hypoxia
HIF transcription
splicing
SF3B1
pancreatic cancer
chromophobe renal cell carcinoma

description: bioRxiv
DIAGNOSTICS AND EPISOTOTIC STATUS OF RABBIT EMERIOSIS IN CERTAIN DISTRICTS OF FERGANA REGION
Creators: name: Akhmadaliyev N.T. - graduate student, Samarkand State University of Veterinary Medicine, Animal Husbandry and  Biotechnology, Veterinary Scientific Research Institute
name: Davlatov R.B. – professor, Samarkand State University of Veterinary Medicine, Animal Husbandry and  Biotechnology, Veterinary Scientific Research Institute.
name: Khushnazarov A.Kh. - junior research fellow, Samarkand State University of Veterinary Medicine, Animal Husbandry and  Biotechnology, Veterinary Scientific Research Institute.
Publisher: name: Zenodo
Year: 2024

description: In  this  article,  rabbits  in  farms  specializing  in  modern  rabbit breeding in Fergana city and Koshtepa districts of Fergana region were examined for eimerosis, and information on the extent and intensity of infestation in farms in these districts is presented.
Politolana Bruce 1981
Creators: name: Frutos, Inmaculada
name: Sorbe, Jean Claude
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Isopoda
Cirolanidae
Politolana

description: Politolana Bruce, 1981
Synonymy. Bruce 1981: 958–959; Wetzer et al. 1987: 1–2; Kensley & Schotte 1989: 140–143; Riseman & Brusca 2002: 64–69.
Type species: Aega polita Stimpson, 1853; original designation Bruce 1981.
Composition: P. concharum (Stimpson 1853); P. eximia (Hansen 1890); P. haneyi Riseman & Brusca 2002; P. impostor Riseman & Brusca 2002; P. i m p re s s a (Harger 1883); P. microphthalma (Hoek 1882); P. polita (Stimpson 1853); P. tricarinata Riseman et al. 2001; P. w i c k s t e n a e Wetzer et al. 1987.
Species excluded from Politolana sensu stricto (according to Riseman & Brusca 2002): P. crosnieri Bruce 1996; P. d a s y p r i o n Bruce 1991; P. obtusispina (Kensley 1975).
description: Published as part of Frutos, Inmaculada & Sorbe, Jean Claude, 2010, Politolana sanchezi sp. nov. (Crustacea: Isopoda: Cirolanidae), a new benthic bioturbating scavenger from bathyal soft-bottoms of the southern Bay of Biscay (northeastern Atlantic Ocean), pp. 20-34 in Zootaxa 2640 on page 22, DOI: 10.5281/zenodo.198554
MOESM3 of A new laboratory evolution approach to select for constitutive acetic acid tolerance in Saccharomyces cerevisiae and identification of causal mutations
Creators: name: Gonzรกlez-Ramos, Daniel
name: Vries, Arthur Gorter De
name: Grijseels, Sietske
name: Berkum, Margo
name: Swinnen, Steve
name: Broek, Marcel
name: Nevoigt, Elke
name: Jean-Marc Daran
name: Pronk, Jack
name: Maris, Antonius
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 3. Primers used for the reverse engineering of mutated alleles.
Additional file 2: of Determining the number of stimuli required to reliably assess corticomotor excitability and primary motor cortical representations using transcranial magnetic stimulation (TMS): a protocol for a systematic review and meta-analysis
Creators: name: Cavaleri, Rocco
name: Schabrun, Siobhan
name: Chipchase, Lucy
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Search strategies. Detailed search strategies that will be utilised to conduct the proposed systematic review. (DOCX 16 kb)
MOESM5 of A new laboratory evolution approach to select for constitutive acetic acid tolerance in Saccharomyces cerevisiae and identification of causal mutations
Creators: name: Gonzรกlez-Ramos, Daniel
name: Vries, Arthur Gorter De
name: Grijseels, Sietske
name: Berkum, Margo
name: Swinnen, Steve
name: Broek, Marcel
name: Nevoigt, Elke
name: Jean-Marc Daran
name: Pronk, Jack
name: Maris, Antonius
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Evolutionary Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 5. Primers, cassettes and SHR used for deletion/counter-selection approach.
Additional file 13: Figure S9. of Integrative genomic deconvolution of rheumatoid arthritis GWAS loci into gene and cell type associations
Creators: name: Walsh, Alice
name: Whitaker, John
name: C. Huang
name: Cherkas, Yauheniya
name: Lamberth, Sarah
name: Brodmerkel, Carrie
name: Curran, Mark
name: Dobrin, Radu
Publisher: name: Figshare
Year: 2016
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Hematology

description: Comparison of RA eQTLs to healthy donor eQTLs. A Comparison of allele frequencies in the RA population used in this study compared to the 1000 genomes dataset for those SNPs that were eQTLs in our dataset. The allele frequency of the peak eQTL for every egene (SNP with lowest p value) was compared to the 1000 genomes project dataset (accessed with Haploreg; http://www.broadinstitute.org/mammals/haploreg/haploreg_v3.php ). B Comparison of allele frequencies for all peak eQTLs in our RA population versus the 1000 genomes EUR population. C Comparison of allele frequencies for peak eQTLs that overlap RA GWAS loci or those in high LD (GWAS loci from Okada et al. [2]). D Overlap of egenes in our RA population and the GTEx whole blood dataset (v6). E Comparison of enrichment in RA synovium datasets for egenes that were unique to the RA dataset, the GTEx dataset, or common to both. These datasets used were: RA synovium compared to healthy controls (GSE1919), inflamed RA synovium compared to non-inflamed controls (GSE48780), and RA synovium compared to healthy controls (GSE55235). The p values were generated by a one-sided Fisherâ  s exact test as described in the manuscript methods. F Selection of enrichment results for the egenes using Nextbio body atlas. The top results for each gene list are shown. The p values are adjusted using the Bonferroni correction. (PDF 7730 kb)
Fraud Detection in Ethereum Using Web-scraping and Natural Language Processing Techniques
Creators: name: Benetti, Zeno
Publisher: name: ETH Zurich
Year: 2021
Subjects: subject: Cryptocurrencies
subject: Fraud detection
subject: Fraud
subject: Ethereum
subject: Cryptocurrency
subject: Ledger
subject: NLP
subject: NATURAL LANGUAGE PROCESSING (ARTIFICIAL INTELLIGENCE)
subject: Imbalanced data
subject: smart contract
subject: Smart Contracts
subject: Word embeddings
subject: Document embeddings
subject: info:eu-repo/classification/ddc/510
subject: Mathematics
subject: FOS: Mathematics

description: The objective of this thesis is to discern Ethereum fraudulent smart contracts (defined as smart contracts related to Ponzi schemes) from non-fraudulent ones on the Ethereum blockchain. For this purpose, we employ web scraping techniques in order to retrieve data on the transactions of each smart contract. More importantly, we retrieve the opcodes sequence of each smart contract, which is to say the set of instructions that determine the contract’s behaviour on the network. The sequence of opcodes of each smart contract is thus embedded using natural language processing (NLP) techniques, to then feed a classifier ensemble. 

As is typical for most problems concerned with fraud detection, the dataset we work on is characterized by a vast class imbalance. The model we propose effectively addresses this issue through (i) leveraging on the resampling of the training set, through (ii) setting a filter for ‘obvious negative (i.e. non-fraudulent) instances’, and through (iii) weighting each classifier’s predictions in the ensemble based on the estimated balanced accuracy of the classifier. The class imbalance has also important implications on the metric through which we are to assess the classifier. In this regards, whereas the most common metric used in the literature is arguably the F1-Score, we found the balanced accuracy to be more suited for out setting. 

Chapter 1 provides the necessary background for the reader to familiarize with the topic. It covers the conceptual difference between a traditional fiat currency such as the Swiss franc and a cryptocurrency. It goes on to explain concepts central to cryptocurrencies, foremost the Proof of Work (PoW) protocol and the smart contract feature. It then provides a literature review on fraud detection, focusing on common challenges such as that of imbalanced datasets. Chapter 2 illustrates the retrieval process for transactional and opcodes data. It also discusses the NLP techniques we use to embed sequences of opcodes into numeric vectors. Chapter 3 presents the proposed model ensemble, explaining the value added by each different stage of the ensemble. In particular, it focuses on how the ensemble addresses the challenge posed by the vast class imbalance. Chapter 4 examines the adequacy and usefulness of the model and, more broadly, of the thesis. In this regard, it discusses not only technical considerations of statistical nature, but also economic and legal ones.
Additional file 4: of Determining the number of stimuli required to reliably assess corticomotor excitability and primary motor cortical representations using transcranial magnetic stimulation (TMS): a protocol for a systematic review and meta-analysis
Creators: name: Cavaleri, Rocco
name: Schabrun, Siobhan
name: Chipchase, Lucy
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Cell Biology
subject: Neuroscience
subject: Biotechnology
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: TMS-specific methodology checklist. Checklist that will be utilised to assess the TMS-specific methodological and reporting quality of included studies. (DOCX 15 kb)
Atemelia Herrich-Schaffer 1853
Creators: name: Liu, Tengteng
name: Yan, Jiahe
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Yponomeutidae
Atemelia

description: Atemelia Herrich-Schäffer, 1853
Atemelia Herrich-Schäffer, 1853: 9, 33. Type species: Oecophora torquatella Lienig & Zeller, 1846, by subsequent designation by Fletcher (1929).
Orinympha Meyrick, 1927: 360. Synonymized by Kyrki (1990). Type species: Orinympha aetherias Meyrick, 1927, by monotypy.
description: Published as part of Liu, Tengteng & Yan, Jiahe, 2017, Review of the Palearctic Atemelia Herrich-Schäffer (Lepidoptera, Yponomeutoidea, Praydidae), with description of a new leafmining species, pp. 327-336 in Zootaxa 4250 (4) on page 328, DOI: 10.11646/zootaxa.4250.4.3, http://zenodo.org/record/495287
MOESM7 of A new laboratory evolution approach to select for constitutive acetic acid tolerance in Saccharomyces cerevisiae and identification of causal mutations
Creators: name: Gonzรกlez-Ramos, Daniel
name: Vries, Arthur Gorter De
name: Grijseels, Sietske
name: Berkum, Margo
name: Swinnen, Steve
name: Broek, Marcel
name: Nevoigt, Elke
name: Jean-Marc Daran
name: Pronk, Jack
name: Maris, Antonius
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 7. Copy number analysis genomes MUT3E.
Additional file 1: of A De-Novo Genome Analysis Pipeline (DeNoGAP) for large-scale comparative prokaryotic genomics studies
Creators: name: Shalabh Thakur
name: Guttman, David
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology

description: Architecture of the DeNoGAP genomics pipeline. The input phase shows the information required at the command line while executing the pipeline. The analysis phase shows various analyses that can be performed using DeNoGAP pipeline. Each analysis can be performed independently of other steps provided required parameters are defined in the respective configuration file of the analysis. (PDF 1372Â kb)
Additional file 2: of A De-Novo Genome Analysis Pipeline (DeNoGAP) for large-scale comparative prokaryotic genomics studies
Creators: name: Shalabh Thakur
name: Guttman, David
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Architecture of SQLite databases for DeNoGAP pipeline. (a) Central database: It includes tables to store basic genomic information, sequences, functional annotations predicted using InterProScan, and sequence-profile similarity information. (b) HomologDB: It includes tables to store list of HMM family pairs that are linked by at least one significantly similar partial sequence, and mapping information for each protein sequence on its respective HMM family and Homolog family. (c) OrthologDB: It includes tables to store pairwise distance information for pairs of ortholog and inparalog, pairwise local similarity information between each pair of protein in the family, homolog multiple alignment and protein family presence and absence information as binary matrix and tabular list. (PDF 996Â kb)
Additional file 9: Figure S5. of Integrative genomic deconvolution of rheumatoid arthritis GWAS loci into gene and cell type associations
Creators: name: Walsh, Alice
name: Whitaker, John
name: C. Huang
name: Cherkas, Yauheniya
name: Lamberth, Sarah
name: Brodmerkel, Carrie
name: Curran, Mark
name: Dobrin, Radu
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer
subject: Plant Biology

description: PADI4 is active in monocytes but not T cells or B cells. Genome browser view of the PADI4 region with tracks from peripheral blood datasets. Histone modification tracks show the fold-change between ChIP and control read counts. Active histone modifications have red bars next to their labels while repressive marks have blue. Genes on the positive and negative strands are shown in blue and cyan, respectively. (PDF 7791 kb)
Additional file 1: of Determining the number of stimuli required to reliably assess corticomotor excitability and primary motor cortical representations using transcranial magnetic stimulation (TMS): a protocol for a systematic review and meta-analysis
Creators: name: Cavaleri, Rocco
name: Schabrun, Siobhan
name: Chipchase, Lucy
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: PRISMA-P (Preferred Reporting Items for Systematic review and Meta-Analysis Protocols) 2015 checklist. Recommended items to address in a systematic review protocol. (DOC 81 kb)
MOESM4 of Metabolic pathway engineering using the central signal processor PII
Creators: name: BjĂśrn Watzer
name: Engelbrecht, Alicia
name: Hauf, Waldemar
name: Stahl, Mark
name: Maldener, Iris
name: Forchhammer, Karl
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer

description: Additional file 4: Table S1. Oligonucleotides used in this study.
Infinite width (finite depth) neural networks benefit from multi-task learning unlike shallow Gaussian Processes - an exact quantitative macroscopic characterization
Creators: name: Heiss, Jakob
name: Teichmann, Josef
name: Wutte, Hanna
Publisher: name: ETH Zurich
Year: 2021
Subjects: subject: Machine Learning
subject: Deep Learning
subject: deep neural networks
subject: neural networks
subject: Artificial Intelligence
subject: Artificial neural networks
subject: Regularization
subject: Bayesian Neural Networks
subject: info:eu-repo/classification/ddc/510
subject: info:eu-repo/classification/ddc/004
subject: Mathematics
subject: FOS: Mathematics
subject: Data processing, computer science

description: We prove in this paper that optimizing wide ReLU neural networks (NNs) with at least one hidden layer using l2-regularization on the parameters enforces multi-task learning due to representation-learning -- also in the limit of width to infinity. This is in contrast to multiple other results in the literature, in which idealized settings are assumed and where wide (ReLU)-NNs loose their ability to benefit from multi-task learning in the infinite width limit. We deduce the ability of multi-task learning from proving an exact quantitative macroscopic characterization of the learned NN in an appropriate function space.
Additional file 2: of Heterogeneity of cerebral TDP-43 pathology in sporadic amyotrophic lateral sclerosis: Evidence for clinico-pathologic subtypes
Creators: name: Takeuchi, Ryoko
name: Tada, Mari
name: Shiga, Atsushi
name: Toyoshima, Yasuko
name: Konno, Takuya
name: Sato, Tomoe
name: Nozaki, Hiroaki
name: Kato, Taisuke
name: Horie, Masao
name: Shimizu, Hiroshi
name: Takebayashi, Hirohide
name: Onodera, Osamu
name: Masatoyo Nishizawa
name: Kakita, Akiyoshi
name: Takahashi, Hitoshi
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Contains supplementary methods regarding ISH and biochemical studies, and legends to Supplementary Figure 1. (DOC 36Â kb)
Whartonia (Fascutonia) indica Hiregaudar and Bal 1956
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Trombiculidae
Whartonia
Whartonia indica

description: Whartonia (Fascutonia) indica Hiregaudar and Bal, 1956b:
ORI
Whartonia indica Hiregaudar and Bal, 1956b
Whartonia (Fascutonia) indica, Fernandes & Kulkarni 2003
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 20, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
MOESM9 of A new laboratory evolution approach to select for constitutive acetic acid tolerance in Saccharomyces cerevisiae and identification of causal mutations
Creators: name: Gonzรกlez-Ramos, Daniel
name: Vries, Arthur Gorter De
name: Grijseels, Sietske
name: Berkum, Margo
name: Swinnen, Steve
name: Broek, Marcel
name: Nevoigt, Elke
name: Jean-Marc Daran
name: Pronk, Jack
name: Maris, Antonius
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 9. Haploid segregant strains.
Distributed identification and control for building thermal management
Creators: name: Mühlebach, Lorin
Publisher: name: ETH Zurich
Year: 2021

description: Advanced control techniques have the potential to drastically improve the energy efficiency of buildings, with respect to thermal management. They can significantly reduce both the monetary cost and the environmental impact related to heating buildings. The application of advanced control schemes such as model based controllers in thermal management of buildings is often limited by (i) the expensive and time consuming process of obtaining an accurate model of the system, and, for more dated structures, (ii) the cost of converting existing control loops to a more advanced control architecture. These are likely factors that hampered the adoption of such advanced model-based control schemes in this sector.

This thesis aims at developing a distributed identification and control architecture for large buildings. Distributed identification and control allows to develop a separate controller for each housing unit from previously collected data, thus avoiding the expensive physics-based modelling process. Moreover, the scheme could take advantage of communications between neighbouring subsystems to improve both identification and control performances. Since data-protection and user privacy are a concern, the number of subsystem which are needed for communication was investigated as well.

A linear auto-regressive model was used for both distributed and centralized identification and different ways of obtaining this model were compared. The effectiveness of the different approaches was investigated through extensive comparisons of the predictive capabilities and of the closed-loop performances of the resulting control schemes. It was shown that the distributed identification lead to better prediction performance of the identified system. By combining the more accurate predictions with a stochastic implementation a better control performance was be obtained.
Additional file 5: of A De-Novo Genome Analysis Pipeline (DeNoGAP) for large-scale comparative prokaryotic genomics studies
Creators: name: Shalabh Thakur
name: Guttman, David
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Marine Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Graphical interface for exploring data generated using DeNoGAP pipeline. (a) Main page of GUI for selection of genomes and setting parameters for comparison. (b) Display of gene list as a result of protein family profile comparison between selected genomes. (c) Display of detailed information for individual protein or genes. (PDF 6662Â kb)
Additional file 3: of Determining the number of stimuli required to reliably assess corticomotor excitability and primary motor cortical representations using transcranial magnetic stimulation (TMS): a protocol for a systematic review and meta-analysis
Creators: name: Cavaleri, Rocco
name: Schabrun, Siobhan
name: Chipchase, Lucy
Publisher: name: Figshare
Year: 2015
Subjects: subject: Developmental Biology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Custom methodological quality checklist. Checklist that will be utilised to assess the general experimental design of included studies. (DOCX 15 kb)
Data-Driven Robust Congestion Pricing
Creators: name: Wang, Yize
Publisher: name: ETH Zurich
Year: 2021
Subjects: Congestion pricing, data-driven decision making, scenario approach, game theory, robust optimization

description: Self-interested routing is often inefficient in traffic networks. Economists and computer scientists have proven that imposing proper tolls on congested roads, i.e., congestion pricing, can effectively improve network efficiency by reducing the total travel time experienced by all users. However, most researches focus on deterministic demands, while uncertainties are rarely studied. As a result, the tolls designed for the deterministic demands may behave undesirably when the actual demands deviate from the expectation. Existing solutions for uncertain demands mostly require a particular structure of either the network or the uncertainty, which motivates us to investigate a robust congestion pricing scheme for general networks that guarantees the toll performance under unknown uncertainties.

This thesis combines congestion pricing and scenario approach, a general framework for data-driven robust optimization, and formulates the robust toll design task as a bi-level optimization. Taking observed scenarios into account, we are able to design robust tolls that perform well when actual demands respect the same distribution with no knowledge of the distribution required. Besides exact algorithms, we also propose approximate ones to solve the NP-hard bi-level optimization within a reasonable time. We illustrate that the robustness can be quantified, and the toll-setter can compromise between robustness and performance. Finally, we demonstrate with numerical examples that the designed tolls can deal with uncertainties in unseen scenarios.
Additional file 5: Figure S2. of Integrative genomic deconvolution of rheumatoid arthritis GWAS loci into gene and cell type associations
Creators: name: Walsh, Alice
name: Whitaker, John
name: C. Huang
name: Cherkas, Yauheniya
name: Lamberth, Sarah
name: Brodmerkel, Carrie
name: Curran, Mark
name: Dobrin, Radu
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Fold-enrichment of RA eQTLs in chromatin states of diverse tissues. A The full results from analysis of 97 datasets. A subset of the full results was shown in Fig.Â 2c. Both cis- and trans-eQTLs were compared to positions of the following chromatin states in diverse tissues: active transcription start sites (TSS), actively transcribed (Tx), enhancers (Enh), active enhancers (EnhA), heterochromatin (Het), bivalent enhancers (EnhBiv), bivalent/poised TSS (TssBiv), repressed Polycomb (ReprPC), and quiescent/low (Quies) regions. PB, peripheral blood. B Results from enrichment analysis with peak eQTLs performed using the goshifter method. The values given are the p values from permutation and the enrichment in parentheses (number of SNPs overlapping the annotation divided by the total number of SNPs). C Enrichment of peak eQTLs in H3K27ac stratified on annotations in other cell types performed using the goshifter method. The p values from permutation are shown. (PDF 7890 kb)
Atemelia torquatella Lienig et Zeller 1846
Creators: name: Liu, Tengteng
name: Yan, Jiahe
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Yponomeutidae
Atemelia
Atemelia torquatella

description: Atemelia torquatella (Lienig et Zeller, 1846)
Figures 4¯7, 9, 11, 13, 13a
Oecophora torquatella Lienig & Zeller, 1846: 279. Type locality: Livland and Curland.
Atemelia torquatella: Herrich-Schäffer, 1853: 9, 33; Pierce and Metcalfe, 1935: 58; Agassiz, 1996: 67; Beavan and Heckford, 2012: 48; Sohn and Peralta, 2014: 340; Lewis and Sohn, 2015: 70.
Atemelia compressella Herrich-Schäffer, [1855]: 112. Type locality: Germany (Mannheim). Oecophora fuscifrontella Stainton, 1849: 13. Type locality: England (Scotland).
Wingspan 8.5¯ 9.5 mm, male smaller than female. Forewing fuscous, with variable pale creamy spots or fasciae (Figs 4¯7). Males in the extreme case nearly unicolorous, but with white scales traceable on tornus (Fig. 6). Females have more and larger white spots, with those on costa near apex and on tornus sometimes joined (Fig. 7).
Male genitalia (Fig. 9).
Female genitalia (Figs 13, 13 a) are characterized in the Diagnosis of A. fusca sp. nov.
Pregenital abdomen (Fig 11). Similar to A. fusca sp. nov. Coremata extending out of the body from between sixth and seventh segment, although Moriuti (1977) declared the absence of coremata for Praydidae.
Diagnosis. See the diagnosis of A. fusca sp. nov.
Material examined. Netherlands: 1 ♀, [province of] Limburg, Schinveld [50.96°N, 6.0°E], e. l. [ex larva] on Betula, 18.IV.1987, leg. G.R. Langohr, genitalia slide no. LIU16001 (RMNH); 1 ♂, [province of Noord-Brabant], Strabrechtse Heide [51.40°N, 5.61°E], [e. l.] Betula, 17.IV.1987, leg. G.R. Langohr, genitalia slide no. LIU16002 (RMNH); Finland: 1 ♂, 2 ♀, Suomi Ppn: Rovaniemen mlk., 7¯ 8.VI.1995, 7.VI.1994, leg. M. Mutanen (ZMUO); 1 ♂, Suomi Ppn: Rovaniemen mlk., 18.IX.1991, ex larva, leg. J. Itämies (ZMUO).
Distribution. Within Europe from Scandinavia and Finland to the Pyrenees, Italy, and Macedonia, and from Britain to northern Russia and Hungary (Karsholt & Nieukerken 2013).
Host plants. Betula spp. (Betulaceae), Ulmus spp. (Ulmaceae) (Agassiz 1996), Myrica gale (Myricaceae) (Beavan & Heckford 2012).
description: Published as part of Liu, Tengteng & Yan, Jiahe, 2017, Review of the Palearctic Atemelia Herrich-Schäffer (Lepidoptera, Yponomeutoidea, Praydidae), with description of a new leafmining species, pp. 327-336 in Zootaxa 4250 (4) on pages 331-333, DOI: 10.11646/zootaxa.4250.4.3, http://zenodo.org/record/495287
MOESM6 of A new laboratory evolution approach to select for constitutive acetic acid tolerance in Saccharomyces cerevisiae and identification of causal mutations
Creators: name: Gonzรกlez-Ramos, Daniel
name: Vries, Arthur Gorter De
name: Grijseels, Sietske
name: Berkum, Margo
name: Swinnen, Steve
name: Broek, Marcel
name: Nevoigt, Elke
name: Jean-Marc Daran
name: Pronk, Jack
name: Maris, Antonius
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Marine Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 6. List of SNPs in all strains.
Oncocera semirubella
Creators: name: Gumhalter, Danijela
name: Kučinić, Mladen
name: Šašić, Martina
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Pyralidae
Oncocera
Oncocera semirubella

description: Oncocera semirubella (Scopoli, 1763)
Vinkovci 16.06.1899 (coll. Koča); Pleternica (coll. Koča); Slavonski Brod, Slavonia, 2 specimens (coll. Koča); Leskovac 10.06.1903 (coll. Koča); Kraljevica 20.08.1903 (coll. Koča); 1 specimen (coll. Koča); Trnovec 06.1956, 2 specimens (coll. Igalffy); Trnovec 07.1956 (coll. Igalffy); Trnovec 08.1956 (coll. Igalffy); Trnovec 09.1956, 2 specimens (coll. Igalffy); Trnovec 07.1957 (coll. Igalffy); Trnovec 08.1957, 3 specimens (coll. Igalffy); Turopolje, Prevlaka, Orle 09.09.1986 (coll. Kučinić); Turopolje, Veleševec 25.08. (coll. Kučinić); Turopolje, Peščenica 04.09.1988, 2 specimens (coll. Kučinić); Turopolje, Veleševec 04.07.1989 (coll. Kučinić); Turopolje, Orle 29.05.1995 (coll. Kučinić); Neretva, Blace 03.06.1997 (coll. Kučinić); Neretva, Soline 11.08.1997 (coll. Kučinić); Neretva, Okruglo oko 11.08.1997 (coll. Kučinić); Plitvice, Sastavci 02.09.1997 (coll. Kučinić); Neretva, Slatina 09.09.1997 (coll. Kučinić); Neretva, Bijeli Vir 10.09.1997 (coll. Kučinić); Neretva, bend towards Borovci 11.09.1997, 2 specimens (coll. Kučinić); Turopolje, Prkovec 22.07.2003 (coll. Kučinić); Biokovo, Grabovac 01.08.2017 (coll. Kučinić)
description: Published as part of Gumhalter, Danijela, Kučinić, Mladen & Šašić, Martina, 2020, Data on pyraloid moth specimens (Lepidoptera: Pyraloidea) held in the collections of CNHM in Zagreb, Croatia, pp. 37-66 in Zootaxa 4895 (1) on page 52, DOI: 10.11646/zootaxa.4895.1.2, http://zenodo.org/record/4321451
KVAS  SUSLASINI  TAYYORLASH
Creators: name: Sultonova Oydina Ibroyimovna, Buxoro muhandislik-texnologiya instituti 3 bosqich talabasi. Buxoro, Uzbekistan
Publisher: name: Zenodo
Year: 2024

description: Alkogolsiz ichimliklar ishlab chiqaradiganzavodlarda kvas suslasi nastoy usulda (kvasli javdar nonidan yoki quruqkvasdan, nastoy yoki javdar unidan, javdar arpa solodidan) yoki ko'proq -konsentrlangan kvas suslasidan ishlab chiqariladi. [1]Nastoy usul yordamidasusla tayyorlash kvas noni yoki quritilgan non mahsulotlarining eruvchanmoddalarini issiq suv bilan ajratib olish va erimagan massani (kvasgushshalarini) ajratishdan iborat
Ortholepis betulae
Creators: name: Gumhalter, Danijela
name: Kučinić, Mladen
name: Šašić, Martina
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Pyralidae
Ortholepis
Ortholepis betulae

description: Ortholepis betulae (Goeze, 1778)
Trnovec 07.1958 (coll. Igalffy); Turopolje, Peščenica 11.05.1989 (coll. Kučinić); Turopolje, Selce 04.07.1989 (coll. Kučinić); Turopolje, Selce 17.08.1989 (coll. Kučinić); Turopolje, Selce 02.07.1990, 2 specimens (coll. Kučinić); Turopolje, Orle 03.07.1995 (coll. Kučinić); Neretva delta 12.08.1997, 2 specimens (coll. Kučinić)
description: Published as part of Gumhalter, Danijela, Kučinić, Mladen & Šašić, Martina, 2020, Data on pyraloid moth specimens (Lepidoptera: Pyraloidea) held in the collections of CNHM in Zagreb, Croatia, pp. 37-66 in Zootaxa 4895 (1) on page 52, DOI: 10.11646/zootaxa.4895.1.2, http://zenodo.org/record/4321451
Additional file 2: Table S1. of Adenosine-generating ovarian cancer cells attract myeloid cells which differentiate into adenosine-generating tumor associated macrophages – a self-amplifying, CD39- and CD73-dependent mechanism for tumor immune escape
Creators: name: Barrio, Itsaso Montalbán Del
name: Penski, Cornelia
name: Schlahsa, Laura
name: Stein, Roland
name: Diessner, Joachim
name: Wöckel, Achim
name: Dietl, Johannes
name: Lutz, Manfred
name: Mittelbronn, Michel
name: Wischhusen, Jörg
name: Häusler, Sebastian
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: KEGG pathway analysis using the R2 pathway finder. List of pathways significantly correlated with the expression of CD39 or CD73 and their respective p values. (DOCX 15 kb)
Additional file 2: of A transposable element insertion in the susceptibility gene CsaMLO8 results in hypocotyl resistance to powdery mildew in cucumber
Creators: name: Berg, Jeroen
name: Appiano, Michela
name: MartĂ­Nez, Miguel SantillĂĄn
name: Hermans, Freddy
name: Vriezen, Wim
name: Visser, Richard
name: Yuling Bai
name: Schouten, Henk
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Plant Biology

description: Multiple sequence alignment of MLO proteins encoded by clade V MLO S -genes from different species. (PDF 287Â kb)
Additional file 3: Table S2. of Adenosine-generating ovarian cancer cells attract myeloid cells which differentiate into adenosine-generating tumor associated macrophages – a self-amplifying, CD39- and CD73-dependent mechanism for tumor immune escape
Creators: name: Barrio, Itsaso Montalbán Del
name: Penski, Cornelia
name: Schlahsa, Laura
name: Stein, Roland
name: Diessner, Joachim
name: Wöckel, Achim
name: Dietl, Johannes
name: Lutz, Manfred
name: Mittelbronn, Michel
name: Wischhusen, Jörg
name: Häusler, Sebastian
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Analysis of the antigen processing and presentation pathway and gene-wise correlation with the expression of CD39 (ENTPD1) and CD73 (NT5E). Out of 57 genes linked to this pathway 42 genes show correlation with CD39 and 41 genes correlate with CD73. (DOCX 15 kb)
Online Learning in Contouring Control Using Bayesian Linear Regression
Creators: name: Krishnadas, Raamadaas
Publisher: name: ETH Zurich
Year: 2021

description: The contouring control problem aims to increase the tracking accuracy while traversing the trajectory as fast as possible. Model-based control algorithms such as Model Predictive Control have improved the tracking performance of contouring tools. They are nevertheless subject to the limitations of the simplified linear system models. The combination of control and machine learning has contributed to significant performance improvement. Therefore, an online learning algorithm for contouring control problems using Bayesian Linear Regression (BLR) is developed in this thesis. The objective is to learn online and adapt locally to model mismatches while tracking the geometry. BLR is a simple model whose major advantage compared to other learning models is that its parameters can be efficiently updated as new data points are collected. The learning performance of BLR is evaluated for different mismatches in the system's dynamics, and its ability for fast adaptation is discussed. In addition, its performance is tested with a high-fidelity model of the real system in simulation and on the real machine using the learned reference trajectories.
Real-Time Learning-Based Model Predictive Control: Online Algorithms and Applications in Energy Systems
Creators: name: Aoife, Henry
Publisher: name: ETH Zurich
Year: 2021

description: The increased availability of sensing and computational capabilities in modern cyber-physical systems and networked systems has led to a growing interest in learning and data-driven control techniques. Learning-Based Model Predictive Control (LBMPC), i.e. the integration of learning methods in Model Predictive Control schemes, is one technique with potential applications for the control of dynamical systems under uncertain and stochastic conditions including humans in the control loop. In real-time applications of LBMPC, control solutions must be achieved in limited time, given the computational burden of both the function-learning and control mechanisms. Furthermore, models and functions associated with users must be learned on the fly from possibly parsimonious feedback. In this work, a framework is proposed for a LBMPC scheme in which little or no prior information is known regarding the dynamic state functions of multiple devices and the cost functions modeling satisfaction, comfort or sense of safety of users interacting with these devices. Gaussian Processes are advocated as a non-parametric nonlinear function modeling technique to enable a low sampling rate for black-box dynamic state and dissatisfaction functions. A regularized primal-dual gradient-based optimization algorithm is adapted to the discrete-time case and integrated with the LBMPC framework to facilitate convergence in a real-time setting with a Q-linear tracking error. Considering the rapidly-evolving demands on the power grid as a result of increasing distributed energy resources, the proposed methodology is implemented for a typical Demand Response application, in which the power setpoints of a network of black-box thermostatically-controlled loads in a building are optimized to provide ancillary services to the grid under fluctuating power demands while minimizing costs incurred to the black-box users inhabiting the building. The methodology is also applied to the classic inverted pendulum problem for the purposes of comparing results across true and GP-learned dynamic state and cost functions.
Delayed deep learning for continuous-time dynamical systems
Creators: name: Schlaginhaufen, Andreas
Publisher: name: ETH Zurich
Year: 2021

description: Bridging the gap between deep learning and dynamical systems, neural
ODEs are a promising approach to model continuous-time dynamical
systems. Motivated by state augmentation in discrete-time models, we
propose to extend the neural ODE framework to neural delay di erential
equations in order to naturally capture non-Markovian e ects such
as time delays or hysteresis, which are often encountered in real world
applications. We demonstrate the superior performance of neural delay
di erential equations on the task of modelling a partially observed
oscillator in comparison with augmented neural ODEs. Moreover, we
showcase robustness to observation noise, generalization over time and
initial conditions, and the expressive power on more complex dynamical
systems. Furthermore, a result on universal approximation is provided
and the connection to delay embeddings is discussed. In an exploratory
part, we discuss deep learning approaches for stability analysis
of time delay systems and propose to jointly learn a dynamics model and
a Lyapunov-Razumikhin function via discretization of the Razumikhin
condition. The applicability of this approach is demonstrated for the
task of stabilizing an inverted pendulum with delayed feedback control.
Additional file 3: of A transposable element insertion in the susceptibility gene CsaMLO8 results in hypocotyl resistance to powdery mildew in cucumber
Creators: name: Berg, Jeroen
name: Appiano, Michela
name: Martínez, Miguel Santillán
name: Hermans, Freddy
name: Vriezen, Wim
name: Visser, Richard
name: Yuling Bai
name: Schouten, Henk
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology
subject: Computational Biology

description: Relative quantification of CsaMLO8∆174 and CsaMLO8∆72 transcript abundances by qRT-PCR on cDNA samples obtained from non-inoculated (A) or inoculated (B) cucumber tissue samples. Fold changes were normalised relative to CsaMLO8∆174 expression. Bars represent the average fold change over three independent biological replicates. Error bars indicate standard errors of the mean. (PDF 386 kb)
Whartonia (Fascutonia) kumaonensis Bhat 1971
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Trombiculidae
Whartonia
Whartonia kumaonensis

description: Whartonia (Fascutonia) kumaonensis Bhat, 1971:
ORI
Whartonia kumaonensis Bhat, 1971
Whartonia (Fascutonia) kumaonensis, Fernandes & Kulkarni 2003
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 20, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Oxybia transversella
Creators: name: Gumhalter, Danijela
name: Kučinić, Mladen
name: Šašić, Martina
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Pyralidae
Oxybia
Oxybia transversella

description: Oxybia transversella (Duponchel, 1836)
Neretva, Mlinište 10.08.1997 (coll. Kučinić); Krka, Skradinski buk 15.10.1998 (coll. Kučinić); Krka, Visovac 15.10.1998 (coll. Kučinić); Mljet, 31.07.2008 (coll. Kučinić); Mljet, Soline 10.09.2008 (coll. Kučinić); Mljet, Goveđari 12.09.2008 (coll. Kučinić); Mljet, Kneže polje 12.09.2008 (coll. Kučinić); Skradin, Milovići 24.06.2015 (coll. Kučinić); Biokovo, village Srida 30.07.2017, 2 specimens (coll. Kučinić); Biokovo, village Srida 10.09.2017, 2 specimens (coll. Kučinić); Biokovo chapel (Kapelica), 550 m. a.s.l. 10.09.2017 (coll. Kučinić)
description: Published as part of Gumhalter, Danijela, Kučinić, Mladen & Šašić, Martina, 2020, Data on pyraloid moth specimens (Lepidoptera: Pyraloidea) held in the collections of CNHM in Zagreb, Croatia, pp. 37-66 in Zootaxa 4895 (1) on page 52, DOI: 10.11646/zootaxa.4895.1.2, http://zenodo.org/record/4321451
Stenus detestabilis Puthz 2017
Creators: name: Lv, Wei-Xiang
name: Zhao, Cai-Yun
name: Zhou, Hong-Zhang
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Stenus
Stenus detestabilis

description: 2. Stenus detestabilis Puthz, 2017.
(Figs. 3 & 4)
Puthz, 2017: 1362 (Type locality: China: Hubei, Daba Shan, pass E of Mt. Dashennongjia, 12 km NW Muyuping, 2050m).
Material examined: 1 male, China: Hubei: Shennongjia County, Shennongding (31°44'N, 110°29'E), 2800-2900 m, 26.VII.1998, Jun- Jian He leg. (IZ-CAS).
Distribution. China (Shaanxi, Hubei).
Remarks. The species is new to Hubei. The expulsion clasps are larger and separate from each other side of the aedeagus (Figs. 3E & 4A), when we observed the specimens from Hubei, China. This differences may not be fundamental but obvious from that reproted by Puthz (2017).
description: Published as part of Lv, Wei-Xiang, Zhao, Cai-Yun & Zhou, Hong-Zhang, 2018, One New Species of the Genus Stenus Latreille (Coleoptera, Staphylinidae) from Hubei, China, pp. 179-187 in Zootaxa 4459 (1) on page 183, DOI: 10.11646/zootaxa.4459.1.9, http://zenodo.org/record/1458474