Additional file 1 of Transcriptional expression changes during compensatory plasticity in the terminal ganglion of the adult cricket Gryllus bimaculatus
Creators: name: Prasad, Meera P.
name: Detchou, Donald K. E.
name: Wang, Felicia
name: Ledwidge, Lisa L.
name: Kingston, Sarah E.
name: Wilson Horch, Hadley
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Table S1. Counts matrix for all samples. Table S2. Transcripts identified as significantly upregulated at or below p = 0.05, 1 day post cercal removal by DESeq2. Column headings are as follows: qaccver (Query accesion.version) saccver (Subject accession.version), qstart (start of alignment in query), qend (end of alignment in query), sstart (start of alignment in subject), send (end of alignment in subject), bitscore, qframe (Query frame), evalue (expect value), sframe (Subject frame), ssciname (Subject Scientific Name), scomname (Subject Common Name), salltitles (All Subject Titles). Table S3. Transcripts identified as significantly upregulated at or below p = 0.05, 3 days post cercal removal by DESeq2. Column headings are as follows: qaccver (Query accesion.version) saccver (Subject accession.version), qstart (start of alignment in query), qend (end of alignment in query), sstart (start of alignment in subject), send (end of alignment in subject), bitscore, qframe (Query frame), evalue (expect value), sframe (Subject frame), ssciname (Subject Scientific Name), scomname (Subject Common Name), salltitles (All Subject Titles). Table S4. Transcripts identified as significantly upregulated at or below p = 0.05, 7 days post cercal removal by DESeq2. Column headings are as follows: qaccver (Query accesion.version) saccver (Subject accession.version), qstart (start of alignment in query), qend (end of alignment in query), sstart (start of alignment in subject), send (end of alignment in subject), bitscore, qframe (Query frame), evalue (expect value), sframe (Subject frame), ssciname (Subject Scientific Name), scomname (Subject Common Name), salltitles (All Subject Titles). Table S5. Transcripts identified as significantly downregulated at or below p = 0.05, 1 day post cercal removal by DESeq2. Column headings are as follows: qaccver (Query accesion.version) saccver (Subject accession.version), qstart (start of alignment in query), qend (end of alignment in query), sstart (start of alignment in subject), send (end of alignment in subject), bitscore, qframe (Query frame), evalue (expect value), sframe (Subject frame), ssciname (Subject Scientific Name), scomname (Subject Common Name), salltitles (All Subject Titles). Table S6. Transcripts identified as significantly downregulated at or below p = 0.05, 3 days post cercal removal by DESeq2. Column headings are as follows: qaccver (Query accesion.version) saccver (Subject accession.version), qstart (start of alignment in query), qend (end of alignment in query), sstart (start of alignment in subject), send (end of alignment in subject), bitscore, qframe (Query frame), evalue (expect value), sframe (Subject frame), ssciname (Subject Scientific Name), scomname (Subject Common Name), salltitles (All Subject Titles). Table S7. Transcripts identified as significantly downregulated at or below p = 0.05, 7 days post cercal removal by DESeq2. Column headings are as follows: qaccver (Query accesion.version) saccver (Subject accession.version), qstart (start of alignment in query), qend (end of alignment in query), sstart (start of alignment in subject), send (end of alignment in subject), bitscore, qframe (Query frame), evalue (expect value), sframe (Subject frame), ssciname (Subject Scientific Name), scomname (Subject Common Name), salltitles (All Subject Titles). Table S8. Transcripts identified as significantly upregulated at or below p = 0.05, 1 day post cercal removal by EdgeR. Column headings are as follows: qaccver (Query accesion.version) saccver (Subject accession.version), qstart (start of alignment in query), qend (end of alignment in query), sstart (start of alignment in subject), send (end of alignment in subject), bitscore, qframe (Query frame), evalue (expect value), sframe (Subject frame), ssciname (Subject Scientific Name), scomname (Subject Common Name), salltitles (All Subject Titles). Table S9. Transcripts identified as significantly upregulated at or below p = 0.05, 3 days post cercal removal by EdgeR. Column headings are as follows: qaccver (Query accesion.version) saccver (Subject accession.version), qstart (start of alignment in query), qend (end of alignment in query), sstart (start of alignment in subject), send (end of alignment in subject), bitscore, qframe (Query frame), evalue (expect value), sframe (Subject frame), ssciname (Subject Scientific Name), scomname (Subject Common Name), salltitles (All Subject Titles). Table S10. Transcripts identified as significantly upregulated at or below p = 0.05, 7 days post cercal removal by EdgeR. Column headings are as follows: qaccver (Query accesion.version) saccver (Subject accession.version), qstart (start of alignment in query), qend (end of alignment in query), sstart (start of alignment in subject), send (end of alignment in subject), bitscore, qframe (Query frame), evalue (expect value), sframe (Subject frame), ssciname (Subject Scientific Name), scomname (Subject Common Name), salltitles (All Subject Titles). Table S11. Transcripts identified as significantly downregulated at or below p = 0.05, 1 day post cercal removal by EdgeR. Column headings are as follows: qaccver (Query accesion.version) saccver (Subject accession.version), qstart (start of alignment in query), qend (end of alignment in query), sstart (start of alignment in subject), send (end of alignment in subject), bitscore, qframe (Query frame), evalue (expect value), sframe (Subject frame), ssciname (Subject Scientific Name), scomname (Subject Common Name), salltitles (All Subject Titles). Table S12. Transcripts identified as significantly downregulated at or below p = 0.05, 3 days post cercal removal by EdgeR. Column headings are as follows: qaccver (Query accesion.version) saccver (Subject accession.version), qstart (start of alignment in query), qend (end of alignment in query), sstart (start of alignment in subject), send (end of alignment in subject), bitscore, qframe (Query frame), evalue (expect value), sframe (Subject frame), ssciname (Subject Scientific Name), scomname (Subject Common Name), salltitles (All Subject Titles). Table S13. Transcripts identified as significantly downregulated at or below p = 0.05, 7 days post cercal removal by EdgeR. Column headings are as follows: qaccver (Query accesion.version) saccver (Subject accession.version), qstart (start of alignment in query), qend (end of alignment in query), sstart (start of alignment in subject), send (end of alignment in subject), bitscore, qframe (Query frame), evalue (expect value), sframe (Subject frame), ssciname (Subject Scientific Name), scomname (Subject Common Name), salltitles (All Subject Titles). Table S14. Blast2GO results for candidates identified as upregulated in the TAG by both EdgeR and DESeq2 1 day after cercal removal. Table S15. Blast2GO results for candidates identified as upregulated in the TAG by both EdgeR and DESeq2 3 days after cercal removal. Table S16. Blast2GO results for candidates identified as upregulated in the TAG by both EdgeR and DESeq2 7 days after cercal removal. Table S17. Blast2GO results for candidates identified as downregulated in the TAG by both EdgeR and DESeq2 1 day after cercal removal. Table S18. Blast2GO results for candidates identified as downregulated in the TAG by both EdgeR and DESeq2 3 days after cercal removal. Table S19. Blast2GO results for candidates identified as downregulated in the TAG by both EdgeR and DESeq2 7 days after cercal removal. Table S20. Swiss-Prot matches for candidates identified as upregulated in the TAG by both EdgeR and DESeq2 1 day after cercal removal. Table S21. Swiss-Prot matches for candidates identified as upregulated in the TAG by both EdgeR and DESeq2 3 days after cercal removal. Table S22. Swiss-Prot matches for candidates identified as upregulated in the TAG by both EdgeR and DESeq2 7 days after cercal removal. Table S23. Swiss-Prot matches for candidates identified as downregulated in the TAG by both EdgeR and DESeq2 1 day after cercal removal. Table S24. Swiss-Prot matches for candidates identified as downregulated in the TAG by both EdgeR and DESeq2 3 days after cercal removal. Table S25. Swiss-Prot matches for candidates identified as downregulated in the TAG by both EdgeR and DESeq2 7 days after cercal removal.