cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Typological structure and properties of property theory
Creators: name: DelBusso, Natalie R.
Publisher: name: No Publisher Supplied
Year: 2018

description: Formal typological analysis provides an otherwise unobtainable level of insight into both theories and the linguistic facts they analyze. This dissertation develops Property Theory (Alber & Prince 2016, 2017, in prep., Alber, DelBusso & Prince 2016), a theory of typological structure in Optimality Theory (OT; Prince & Smolensky 1993/2004). The list of languages generated in an OT factorial typology shows what the theory predicts, but not why it does so nor how it organizes the languages in the typological space. Property analysis answers these questions, finding the core structure that emerges directly from the logic of OT.  As a theory of formal OT typologies, Property Theory has a complex internal structure. The dissertation develops algorithms to translate between the formal objects of Property Theory (properties) and those of OT (ranking conditions). It examines cross-property dependencies and sufficient conditions on a set of properties for it to generate OT grammars, and thus an OT typology.   In taking typologies themselves as objects of study, property analysis leads to a re-conception of core constraint relationships and identification of classes of intensionally equivalent systems that share an internal formal structure while differing in the empirical areas analyzed. The dissertation develops a typological definition of stringently-related constraints and shows that systems with such constraints have a common structure, explaining diverse data in the same way. It shows that this organization characterizes analyses deriving the Final-Over-Final Condition, a typology of possible cross-linguistic syntactic structures.
Hypomasticus copelandii
Creators: name: Ceríaco, Luis M. P.
name: Santos, Bruna S.
name: Semedo, Thiago B. F.
name: Garcia, Lucas Canes
name: Moreira, Cristiano Rangel
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Characiformes
Anostomidae
Hypomasticus
Hypomasticus copelandii

description: Hypomasticus copelandii (Steindachner 1875)
Extant specimens: MCUC ZOO.0000056 (Fig. 13).
Classification on the specimen: “P. Abd. Salmo mediterraneus ”.
Common names on the specimen (Portuguese/Tupi): None/ “Piába”.
Comments: This species was undescribed at the time Veloso prepared it. As Salmo mediterraneus is a name not available, and that this species is described in Ichthyologia Fluminensis manuscript with the same name, we believe that Veloso probably intended to name it. In the Ajuda’s inventory, there are 37 herborized specimens of Salmo listed, but no specimen of Salmo mediterraneus is listed in the transference document to the University of Coimbra. However, there is one specimen that is reported to have been transferred to Lisboa (not found). Hypomasticus copelandii occurs in the coastal drainages of southeastern Brazil from rio Jucuruçu basin to rio Paraíba do Sul basin (Mendes et al. 2022).
description: Published as part of Ceríaco, Luis M. P., Santos, Bruna S., Semedo, Thiago B. F., Garcia, Lucas Canes & Moreira, Cristiano Rangel, 2023, The fish collection of José Mariano da Conceição Veloso (1742 - 1811) and the beginning of ichthyological research in Brazil, with a taxonomic description of the extant specimens, pp. 1-85 in Zootaxa 5391 (1) on page 26, DOI: 10.11646/zootaxa.5391.1.1, http://zenodo.org/record/10434709
Additional file 1: of A pharmacogenetic signature of high response to Copaxone in late-phase clinical-trial cohorts of multiple sclerosis
Creators: name: Ross, Colin
name: Towfic, Fadi
name: Shankar, Jyoti
name: Laifenfeld, Daphna
name: Thoma, Mathis
name: Davis, Matthew
name: Weiner, Brian
name: Kusko, Rebecca
name: Zeskind, Ben
name: Knappertz, Volker
name: Grossman, Iris
name: Hayden, Michael
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: A comprehensive summary of sample sizes and cohorts in pharmacogenetics studies in the field of multiple sclerosis. (DOCX 23 kb)
Gonomyia (Gonomyia) sicula Lackschewitz 1940
Creators: name: Ÿ, Jaroslav Star
name: Oosterbroek, Pjotr
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Limoniidae
Gonomyia
Gonomyia sicula

description: Gonomyia (Gonomyia) sicula Lackschewitz, 1940
Material examined: Spain: Malaga, 15 km NW Jimena de la Frontera, 400 m, cork-oak forest, 17. IV.1994, 2 ɗ, P. Oosterbroek & C. Hartveld leg., J. Starý det. Tunisia: Oued Es Zaouïa, 11 km S Aïn Draham, 300 m, along brook & Cistus carr, 6. V.1980, 2 ɗ, E. v. Nieukerken, G. Bryan & P. Oosterbroek leg., J. Starý det.
Distribution: Italy (incl. Sicily), Turkey (Mugla). First records for Spain and Tunisia (new to North Africa).
Gonomyia (Gonomyia) subtenella Savchenko, 1972 (Fig 2)
Material examined: Macedonia: Saraj, 24.00N 21.26E, 13.–15. VIII.1963, 1 ɗ, exc. Leiden, J. Starý det. Morocco: Ht Atlas, Massif Toubkal, Arhbalou, 43 km S Marrakech (route S 513), 1000 m, 3.–14. VII.1977, 5 ɗ, H. & T. v. Oorschot, E. Houkes & P. Oosterbroek leg., J. Starý det.
Distribution: Lithuania, Azerbaijan, Georgia, Iran. First records for Macedonia and Morocco (new to North Africa).
Note: An overlooked species, only recently recorded in Europe from Lithuania (Podenas & Visarčuk 2006), but probably widespread at least in the east of Europe. It differs from G. (G.) tenella (Meigen, 1818) especially by the shape of the aedeagus (cf. Figs 1–2).
description: Published as part of Ÿ, Jaroslav Star & Oosterbroek, Pjotr, 2008, New records of West Palaearctic Limoniidae, Pediciidae and Cylindrotomidae (Diptera) from the collections of the Zoological Museum, Amsterdam, pp. 1-20 in Zootaxa 1922 on pages 4-5, DOI: 10.5281/zenodo.184739
Process-based risk measures and risk-averse control of observable and partially observable discrete-time systems
Creators: name: Fan, Jingnan
Publisher: name: No Publisher Supplied
Year: 2018

description: In this thesis, we develop theoretical foundations of the theory of dynamic risk measures for controlled stochastic processes, and we apply our theory to Markov decision processes (MDP) and partially observable Markov decision processes (POMDP).    We consider a new class of dynamic risk measures for controlled discrete-time stochastic processes, which we call process-based. By introducing a new concept of stochastic conditional time consistency, we derive the structure of process-based risk measures enjoying this property. It is shown that such risk measures can be equivalently represented by a collection of static law-invariant risk measures on the space of functions of the state of the base process.    The results are first specialized to Markov decision problems (MDP), in which we use process-based dynamic risk measures to evaluate control policies. We derive the refined structure of risk measures for this kind of problems, along with the associated dynamic programming equations. We then specialize our theory to partially observable Markov decision problems (POMDP). Compared to MDP, in POMDP we can only observe part of the state, and we need to infer the rest of the state conditional on our observations. We derive that the stochastically conditionally time-consistent dynamic risk measures can be represented by a sequence of law-invariant risk measures on the space of function of the observable  part of the state. The corresponding dynamic programming equations are also derived.    Finally, as an application to our theory on POMDP, we study a model for machine deterioration problem.
Carangoides plagiotaenia Bleeker 1857
Creators: name: Andréfouët, Serge
name: Chen, Wei-Jen
name: Kinch, Jeff
name: Mana, Ralph
name: Russell, Barry C.
name: Tully, Dean
name: White, William T.
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Carangidae
Carangoides
Carangoides plagiotaenia

description: Carangoides plagiotaenia Bleeker 1857 —Barcheek trevally
Status at New Ireland. New record, based on a specimen observed at Selapiu Island, Kavieng District, 1–31 m depth, St. T 14, on 3 Nov. 2006, by Gerald R. Allen.
Distribution and habitat. New Ireland: 2.—General distribution: Red Sea, East and South Africa and Mauritius (Mascarenes) east to Marshall Islands, Tonga and Samoa, north to Ryukyu Islands, south to Western Australia and Queensland (Australia). Solitary or in small groups in reefs, 2–200 m depth. Marine.
description: Published as part of Andréfouët, Serge, Chen, Wei-Jen, Kinch, Jeff, Mana, Ralph, Russell, Barry C., Tully, Dean & White, William T., 2019, Checklist of the marine and estuarine fishes of New Ireland Province, Papua New Guinea, western Pacific Ocean, with 810 new records, pp. 1-360 in Zootaxa 4588 (1) on page 145, DOI: 10.11646/zootaxa.4588.1.1, http://zenodo.org/record/2988163
Fluid-structure simulation of multigait, jellyfish-like locomotor
Creators: name: Dusane, Ajay
Publisher: name: No Publisher Supplied
Year: 2018

description: The current literature suggests that moon jellyfish are the most efficient underwater swimmers for their size. The objective of this thesis is to understand the gait- and material-specific fluid-structure interactions associated with the propulsion of moon jellyfish by simulating the motion, the mechanics, and fluid dynamics of moon jellyfish. The thesis uses a linear elastic material to describe the behavior of the silicone bell of the jellyfish made of Mold Star 30 and Ecoflex 30. Deflection-based experiments determined Young's modulus associated with these materials to be 1 MPa and 72 kPa, respectively for the range of strains typical of the flapping bell. To account for damping beyond that of the viscosity of the surrounding fluid, models incorporated Rayleigh damping or Maxwell and Kelvin-Voigt linear viscoelasticity. Parameters for these models came from the observed vibratory responses of elastomeric beams. Experiments and simulations with a flapping fin in water showed similar vortex shedding patterns.    The axisymmetric, laminar jellyfish-like numerical model developed emulates contraction of muscles in a moon jellyfish. The numerical model demonstrates the starting and stopping vortices mentioned in the literature. Understanding the fluid-structure interactions associated with the jellyfish motion, effects of changing the dynamics of the motion have the potential to influence the design of high-efficiency underwater vehicles.
Leveraging labor in New Orleans
Creators: name: Daser, Deniz
Publisher: name: No Publisher Supplied
Year: 2018

description: As one of the largest migrant communities in New Orleans, Hondurans played a significant role in post-Hurricane Katrina rebuilding. Many of these migrants, still working today in construction, carefully weigh risk and opportunity in pursuing livelihoods characterized by wage theft, work injury, and potential detainment and deportation. This dissertation examines how Hondurans draw upon their post-Katrina labor in rebuilding to assert grassroots political and affective claims to a city – albeit one with deep socioeconomic and racial inequalities – that many of them have come to call home after arduous migratory journeys. The transnational commodity trade from the early twentieth century on encouraged waves of emigration from the banana plantations to the port of New Orleans. These historical relations belie popular accounts of a so-called new Latinx footprint in the city attributed to a growing and often undocumented population filling the ranks of a post-Katrina labor market that had lost its displaced, largely African-American working class. Drawing on eighteen months of ethnographic fieldwork and archival research conducted between 2011 and 2016 in the greater New Orleans area, this dissertation contributes to historically-informed, anthropological understandings of how low-wage workers embody inequalities of local labor markets such as work injury, wage theft, and potential detainment and deportation; how migrants frame labor as an ethical contribution through which they assert civic belonging; and finally, how insecurities such as crime, aggressive law enforcement, and precarious worksites are transnationally linked from migrant departure to settlement.
Scythropiodes jiulianae Park et Wu 1997
Creators: name: Wang, Qingyun
name: Li, Houhun
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Scythropiodes
Scythropiodes jiulianae

description: Scythropiodes jiulianae Park et Wu, 1997
Scythropiodes jiulianae Park et Wu, 1997: 37. TL: China (Jiangxi). TD: IZCAS. Distribution. China (Guizhou, Hubei, Hunan, Jiangxi, Sichuan, Zhejiang).
description: Published as part of Wang, Qingyun & Li, Houhun, 2016, Review of the genus Scythropiodes Matsumura, 1931 (Lepidoptera, Lecithoceridae, Oditinae) from China, with a checklist of the world, pp. 301-329 in Zootaxa 4132 (3) on page 327, DOI: 10.11646/zootaxa.4132.3.1, http://zenodo.org/record/258365
Additional file 2: of A pharmacogenetic signature of high response to Copaxone in late-phase clinical-trial cohorts of multiple sclerosis
Creators: name: Ross, Colin
name: Towfic, Fadi
name: Shankar, Jyoti
name: Laifenfeld, Daphna
name: Thoma, Mathis
name: Davis, Matthew
name: Weiner, Brian
name: Kusko, Rebecca
name: Zeskind, Ben
name: Knappertz, Volker
name: Grossman, Iris
name: Hayden, Michael
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Candidate variants and genes from stage I of analysis. (DOCX 17 kb)
Gonomyia (Idiocerodes) concinna Lackschewitz 1940
Creators: name: Ÿ, Jaroslav Star
name: Oosterbroek, Pjotr
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Limoniidae
Gonomyia
Gonomyia concinna

description: Gonomyia (Idiocerodes) concinna Lackschewitz, 1940
Material examined: Spain: Granada, Rio Guadalfeo, Orgiva, 300 m, 30. IV.1966, 1 ɗ, O. Martin leg., J. Starý det.
Distribution: Albania, Bulgaria, Macedonia, Romania. First record for Spain.
description: Published as part of Ÿ, Jaroslav Star & Oosterbroek, Pjotr, 2008, New records of West Palaearctic Limoniidae, Pediciidae and Cylindrotomidae (Diptera) from the collections of the Zoological Museum, Amsterdam, pp. 1-20 in Zootaxa 1922 on page 5, DOI: 10.5281/zenodo.184739
A framework for development of integrated and computationally feasible models of large-scale mammalian cell bioreactors
Creators: name: Farzan, Parham
Publisher: name: No Publisher Supplied
Year: 2018

description: Industrialization of bioreactors has been achieved by integrating knowledge from several applying core concepts of chemical engineering, cellular and molecular biology, and biochemistry. Mathematical modeling has provided insight into biological and physical phenomena in bioreactors. Currently, cell culture models focus on the relevant portions of the cellular activities that control the production of protein of interest. Application of existing models for improvement of bioreactor operation is first investigated. Particular attention is paid to large scale mammalian cultures for their key role in production of complex therapeutic proteins and financial success of biotechnology industry. The attributes of such culture demand enhancement in modeling as their performance is sensitive to local gradients of chemical and physical stimuli. A framework for development of dynamic and computationally feasible models that take into account the interactions of hydrodynamics and cellular activities is presented. The system is modeled as a network of zones to capture spatial heterogeneity. For computational tractability the biophase evolves dynamically over continuous time while hydrodynamics is defined over a discrete space. The discrete space consists of steady states of flow under predetermined operating conditions. Definition of states for operation through discretization of process parameters converts the problem into a dynamic transition problem. The decomposition of time and space provides the necessary formulation and modeling environment for coupling the model with nonlinear solvers and optimization of operation policy. Sensitivity of the cell culture model to operating conditions is a novel feature which allows studying the effects of hydrodynamics on growth, viability and productivity of organisms. Finally, the application of surrogate modeling for replacing the discrete space of hydrodynamics with a semi-continuous space is investigated.
Hoplolabis (Parilisia) sororcula Lackschewitz 1940
Creators: name: Ÿ, Jaroslav Star
name: Oosterbroek, Pjotr
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Limoniidae
Hoplolabis
Hoplolabis sororcula

description: Hoplolabis (Parilisia) sororcula (Lackschewitz, 1940)
Material examined: Spain: Granada, Rio Guadalfeo, Orgiva, 300 m, 4. IV.1966, 1 ɗ, L. Lyneborg, O. Martin & S. Langemark leg., J. Starý det.
Distribution: France, Germany, Italy (incl. Sicily), Romania, Slovakia, Switzerland, Ukraine. First record for Spain.
description: Published as part of Ÿ, Jaroslav Star & Oosterbroek, Pjotr, 2008, New records of West Palaearctic Limoniidae, Pediciidae and Cylindrotomidae (Diptera) from the collections of the Zoological Museum, Amsterdam, pp. 1-20 in Zootaxa 1922 on page 5, DOI: 10.5281/zenodo.184739
MOESM2 of Synaptonemal complex protein 3 is associated with lymphangiogenesis in non-small cell lung cancer patients with lymph node metastasis
Creators: name: Haruhisa Kitano
name: Joon-Yong Chung
name: Noh, Kyung
name: Lee, Young-Ho
name: Kim, Tae
name: Lee, Seok
name: Soo-Heang Eo
name: Cho, Hyung
name: Choi, Chel
name: Inoue, Shuhei
name: Hanaoka, Jun
name: Fukuoka, Junya
name: Hewitt, Stephen
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2: Table S1. Clinicopathological characteristics of patients (nÂ =Â 89).
Caranx bucculentus Alleyne & Macleay 1877
Creators: name: Andréfouët, Serge
name: Chen, Wei-Jen
name: Kinch, Jeff
name: Mana, Ralph
name: Russell, Barry C.
name: Tully, Dean
name: White, William T.
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Carangidae
Caranx
Caranx bucculentus

description: Caranx bucculentus Alleyne & Macleay 1877 —Bluespotted trevally
Status at New Ireland. New record, based on specimens observed at Kavieng fish market in 2004–2005 by Jeff Kinch during CFMDP Survey.
Distribution and habitat. New Ireland: 2.—General distribution: Northern Australia to Papua New Guinea. Adults are found in lagoon habitats, juveniles in estuaries, 2–63 m depth. Transitional water and marine.
description: Published as part of Andréfouët, Serge, Chen, Wei-Jen, Kinch, Jeff, Mana, Ralph, Russell, Barry C., Tully, Dean & White, William T., 2019, Checklist of the marine and estuarine fishes of New Ireland Province, Papua New Guinea, western Pacific Ocean, with 810 new records, pp. 1-360 in Zootaxa 4588 (1) on page 146, DOI: 10.11646/zootaxa.4588.1.1, http://zenodo.org/record/2988163
Additional file 2: Table S2. of Transcriptome modulation by hydrocortisone in severe burn shock: ancillary analysis of a prospective randomized trial
Creators: name: Plassais, Jonathan
name: Venet, Fabienne
name: Marie-AngĂŠlique Cazalis
name: Quang, Diane Le
name: Pachot, Alexandre
name: Monneret, Guillaume
name: Tissot, Sylvie
name: Textoris, Julien
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Details of modulated probe sets and genes at each time point for analysis 1, comparing modulation of gene expression according to burn injury (A). and analysis 2, comparing the modulation of gene expression according to hydrocortisone treatment (B). Each cell provides the number of modulated probe sets (genes). (DOC 40Â kb)
Megaleporinus conirostris
Creators: name: Ceríaco, Luis M. P.
name: Santos, Bruna S.
name: Semedo, Thiago B. F.
name: Garcia, Lucas Canes
name: Moreira, Cristiano Rangel
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Characiformes
Anostomidae
Megaleporinus
Megaleporinus conirostris

description: Megaleporinus conirostris (Steindachner 1875)
Extant specimens: MCUC ZOO.0000061 (Fig. 14).
Classification on the specimen: “P. Abd. Salmo argentina ”
Common names on the specimen (Portuguese/Tupi): Piaba branca (see comments).
Comments: This species was undescribed at the time Veloso prepared it. The specific name “ argentina ” inscribed on the herbarium sheet appears to be erroneous, as in Ichthyologia Fluminensis manuscript this species has the specific name spelled “ argentinus ”. This same spelling is also used in the transference document to the University of Coimbra. Salmo argentinus Linnaeus 1758 [= Piabucus dentatus (Koelreuter 1763)] was a species known at the time, although distinctively different morphologically from Megaleporinus conirostris. The Ajuda’s inventory includes 37 herborized specimens of Salmo, and two specimens identified as Salmo argentinus listed in the transference documentation to the University of Coimbra. This species is not listed in the transference list to the Lisbon Academy of Sciences. While the common name is on the right side, a place where usually the Tupi name is placed, it is, in fact, a combination of Tupi (“piaba”) and Portuguese (“branca”). Megaleporinus conirostris occurs in the rio Paraíba do Sul and rio Doce basins in southeastern Brazil (F. C. T. Lima Pers. comm).
description: Published as part of Ceríaco, Luis M. P., Santos, Bruna S., Semedo, Thiago B. F., Garcia, Lucas Canes & Moreira, Cristiano Rangel, 2023, The fish collection of José Mariano da Conceição Veloso (1742 - 1811) and the beginning of ichthyological research in Brazil, with a taxonomic description of the extant specimens, pp. 1-85 in Zootaxa 5391 (1) on page 28, DOI: 10.11646/zootaxa.5391.1.1, http://zenodo.org/record/10434709
Scythropiodes leucostola Meyrick 1921
Creators: name: Wang, Qingyun
name: Li, Houhun
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Scythropiodes
Scythropiodes leucostola

description: Scythropiodes leucostola (Meyrick, 1921)
Protobathra leucostola Meyrick, 1921: 436. TL: Japan. TD: BMNH. Scythropiodes seriatopunctata, Matsumura, 1931: 1099.
Distribution. China (Fujian? Jiangxi? Zhejiang?), Korea, Japan. Remarks. This species might not be distributed in China based on our present study.
description: Published as part of Wang, Qingyun & Li, Houhun, 2016, Review of the genus Scythropiodes Matsumura, 1931 (Lepidoptera, Lecithoceridae, Oditinae) from China, with a checklist of the world, pp. 301-329 in Zootaxa 4132 (3) on page 327, DOI: 10.11646/zootaxa.4132.3.1, http://zenodo.org/record/258365
Additional file 2: Figure S2. of Using record linkage to validate notification and laboratory data for a more accurate assessment of notifiable infectious diseases
Creators: name: Lim, Faye
name: Blyth, Christopher
name: Levy, Avram
name: Fathima, Parveen
name: Klerk, Nicholas De
name: Giele, Carolien
name: Moore, Hannah
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Proportion of IPD cases recorded in each dataset by year of specimen collection (2001–2012). WANIDD = Western Australian Notifiable Infectious Diseases Database; PathWest = PathWest Laboratory Medicine Western Australia Database. Percentages may not equal to 100 due to rounding. (DOCX 30 kb)
Micro-neurocircuitry
Creators: name: Fantuzzo, Joseph Andrew
Publisher: name: No Publisher Supplied
Year: 2018

description: Neuropsychiatric disorders which target defined neural circuits in the brain have been dif-ficult to treat, due to the complexity of the human brain and inaccessibility to tissue for study.  As a result, there has been a dearth of successful pharmaceutical therapies availa-ble to treat these disorders, which is largely due to inadequate predictive models of effi-cacy.  Human iPSC-derived neurons hold promise as one such system, but to date have been primarily used in single neuronal population studies focused toward unraveling complex neurological disease mechanisms and genetic studies.  While this is an im-portant step toward the goal of better therapeutic development, these cell cultures have been removed from their neural circuit contexts, which may also remove important dis-ease endophenotypes which can only be seen in circuit models.  We have therefore de-veloped microfluidic-based circuit models using human neurons which can capture cer-tain aspects of these neural circuits.  These microdevices are designed for compartmental-ization of distinct neuronal subtypes, resembling the connections between varying brain nuclei.  Here, we demonstrate that human induced neurons establish functional synaptic contacts and exhibit circuit network activity within and between device compartments.  These circuits can be excited by small molecules or optogenetics and altered using recep-tor antagonists, and their functional activity measured by either patch clamp or calcium imaging.  Furthermore, we have developed additional computational tools which aid in the processing of large amounts data, thereby accelerating the interpretation of data and facilitating high-throughput screening studies.
Idiocera (Idiocera) lackschewitzi Stary 1977
Creators: name: Ÿ, Jaroslav Star
name: Oosterbroek, Pjotr
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Limoniidae
Idiocera
Idiocera lackschewitzi

description: Idiocera (Idiocera) lackschewitzi (Starý, 1977)
Material examined: Greece: Pentalophon, 900–1000 m, 40.14N 21.09E, 25.–27. VII.1963, 15 ɗ, 5Ψ, 2 specimens, exc. Leiden, J. Starý det. Macedonia: Saraj, 42.00N 21.26E, 13.–15. VIII.1963, 1 ɗ, exc. Leiden, J. Starý det.
Distribution: Albania, Italy (Sicily). First records for Greece and Macedonia.
description: Published as part of Ÿ, Jaroslav Star & Oosterbroek, Pjotr, 2008, New records of West Palaearctic Limoniidae, Pediciidae and Cylindrotomidae (Diptera) from the collections of the Zoological Museum, Amsterdam, pp. 1-20 in Zootaxa 1922 on page 5, DOI: 10.5281/zenodo.184739
Additional file 3: Table S1. of Transcriptome modulation by hydrocortisone in severe burn shock: ancillary analysis of a prospective randomized trial
Creators: name: Plassais, Jonathan
name: Venet, Fabienne
name: Marie-AngĂŠlique Cazalis
name: Quang, Diane Le
name: Pachot, Alexandre
name: Monneret, Guillaume
name: Tissot, Sylvie
name: Textoris, Julien
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Plant Biology

description: Functional annotation of genes modulated by burn shock, classified according to their modulation pattern. (DOCX 23Â kb)
Additional file 6: Figure S5. of Evolutionary origin of type IV classical cadherins in arthropods
Creators: name: Sasaki, Mizuki
name: Akiyama-Oda, Yasuko
name: Oda, Hiroki
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Blast-based dot-plot comparisons between the amino acid sequence of Ha1- (A) or Ph1- (B) cadherin and those of DE-, Dp1-, Sm1-, Cm-, Le2-, DN- and Pn-cadherins. Green boxes indicate comparisons between the EC1-EC5 region of Ha1- or Ph1- cadherin and the EC6-EC10 regions of the type III cadherins or the corresponding region of Sm1-cadherin, which exhibited marked collinear similarities. Blue boxes indicate comparisons between the EC6-EC8 region of Ha1- or Ph1-cadherin and the EC11-EC16 regions of the type III cadherins or the corresponding region of Sm1-cadherin, which exhibited ambiguous collinear similarities. (PDF 2623Â kb)
Additional file 5: of Evolutionary origin of type IV classical cadherins in arthropods
Creators: name: Sasaki, Mizuki
name: Akiyama-Oda, Yasuko
name: Oda, Hiroki
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Figure S4. Schematic representation of detected sequences of C. multidentata related to classical cadherins. A. Nine reconstructed genomic sequences of C. multidentata that contain coding sequences closely related to those of Le1-cadherin. The sequences are available under the indicated accession numbers. B. Eight transcriptome contigs connected by raw reads. The sequences of these contigs are available under the indicated accession numbers. Contig33642 was modified by an insertion of 5 nucleotide bases (CCGGA) between the nucleotides 349 and 350 based on assessment of raw reads (asterisk). The assembled transcript and protein sequences are available in Additional file 12. Detected domain elements are shown. (PDF 108Â kb)
Hoplias malabaricus
Creators: name: Ceríaco, Luis M. P.
name: Santos, Bruna S.
name: Semedo, Thiago B. F.
name: Garcia, Lucas Canes
name: Moreira, Cristiano Rangel
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Characiformes
Erythrinidae
Hoplias
Hoplias malabaricus

description: Hoplias malabaricus (Bloch 1794)
Extant specimens: MCUC ZOO.0000024 (Fig. 15a) and MCUC ZOO.0000059 (Fig. 15b).
Classification on the specimen: “P. Abd. Cyprinus niger ”.
Common names on the specimen (Portuguese/Tupi): Traira (see comments).
Comments: This species was undescribed at the time Veloso prepared it. Given that the species’ name is an unknown name, it is reasonable to assume that Veloso had the intention of naming this species. There is a description of this species in Ichthyologia Fluminensis. In the Ajuda’s inventory, a total of 25 herborized specimens are cataloged under the genus Cyprinus. However, there is no mention of Cyprinus niger specimen in the transference document to the University of Coimbra. The transference documentation to the Lisbon Academy of Sciences mentions four specimens (not found), identified as Syprinus [sic] niger. The common name “traíra”, which is still used today to refer to this species, is inscribed on different sides of each herbarium sheet. This could suggest that Veloso was uncertain regarding the name’s origin. In the Ichthyologia Fluminensis, the name is spelled as “trayra.” According to Navarro (2013), “traíra” originates from the Tupi word “tare’ira”. It is worth mentioning that on the bottom left corner of one of the herbarium sheets (ZOO.0000024), a small pencil inscription with the word “ Barbus ” is present. Barbus Daudin 1805 is a genus of freshwater fishes that does not occur in South America and exhibit significant morphological dissimilarities from H. malabaricus. Hoplias malabaricus is a species complex and occurs in most drainages of South America (Guimarães et al. 2021).
Order Siluriformes
description: Published as part of Ceríaco, Luis M. P., Santos, Bruna S., Semedo, Thiago B. F., Garcia, Lucas Canes & Moreira, Cristiano Rangel, 2023, The fish collection of José Mariano da Conceição Veloso (1742 - 1811) and the beginning of ichthyological research in Brazil, with a taxonomic description of the extant specimens, pp. 1-85 in Zootaxa 5391 (1) on page 28, DOI: 10.11646/zootaxa.5391.1.1, http://zenodo.org/record/10434709
Idiocera (Idiocera) laterospina Alexander 1975
Creators: name: Ÿ, Jaroslav Star
name: Oosterbroek, Pjotr
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Limoniidae
Idiocera
Idiocera laterospina

description: Idiocera (Idiocera) laterospina (Alexander, 1975)
Material examined: Greece: Pentalophon, 900–1000 m, 40.14N 21.09E, 25.–27. VII.1963, 5 ɗ, 9Ψ, exc. Leiden, J. Starý det. Turkey: Malatya, 10 km SE Yesilyurt, 1400 m, 24. VII.1955, 1 ɗ, D. v.d. Poorten & W. De Prins leg., J. Starý det.
Distribution: Armenia, Turkey, Iran. First record for Greece (new to Europe); confirmed for Turkey from the east (so far known from Aydin in West Turkey).
description: Published as part of Ÿ, Jaroslav Star & Oosterbroek, Pjotr, 2008, New records of West Palaearctic Limoniidae, Pediciidae and Cylindrotomidae (Diptera) from the collections of the Zoological Museum, Amsterdam, pp. 1-20 in Zootaxa 1922 on page 5, DOI: 10.5281/zenodo.184739
Caranx ignobilis
Creators: name: Andréfouët, Serge
name: Chen, Wei-Jen
name: Kinch, Jeff
name: Mana, Ralph
name: Russell, Barry C.
name: Tully, Dean
name: White, William T.
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Carangidae
Caranx
Caranx ignobilis

description: Caranx ignobilis (Forsskål in Niebuhr 1775) —Giant trevally
Status at New Ireland. First recorded from New Hanover and Feni Island, New Ireland by Munro (1958: 182); also reported from Kulineua and Matanalaua rivers, New Hanover as Caranx carangus (non Bloch, 1793) by Munro (1958: 181), and from Lihir Group, Namatamai District by Fry et al. (2006: 129); subsequently reported from Tigak Islands, Kavieng by Wright & Richards (1985: 73). Specimens observed at Kavieng fish market in 2004–2005 by Jeff Kinch during CFMDP Survey, and by Barry C. Russell on 28 June 2014. A specimen photographed at Lissenung Island by Dietmar Amon on 8 Feb. 2007.
Distribution and habitat. New Ireland: 1, 2, 5.—General distribution: East Africa, Madagascar and Mascarenes east to Galapagos Archipelago, north to southern Japan, south to Lord Howe Island, New Caledonia, Tonga and Rapa. Adults are found over clear lagoon and seaward coral reefs, juveniles in estuaries, 0–188 m depth. Transitional water and marine.
description: Published as part of Andréfouët, Serge, Chen, Wei-Jen, Kinch, Jeff, Mana, Ralph, Russell, Barry C., Tully, Dean & White, William T., 2019, Checklist of the marine and estuarine fishes of New Ireland Province, Papua New Guinea, western Pacific Ocean, with 810 new records, pp. 1-360 in Zootaxa 4588 (1) on page 146, DOI: 10.11646/zootaxa.4588.1.1, http://zenodo.org/record/2988163
Scythropiodes lividula Meyrick 1932
Creators: name: Wang, Qingyun
name: Li, Houhun
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Scythropiodes
Scythropiodes lividula

description: Scythropiodes lividula (Meyrick, 1932)
Odites lividula Meyrick, 1932: 286. TL: Japan. TD: BMNH. Distribution. China (?), Korea, Japan.
Remarks. Sakamaki (2013) mentioned the distribution of this species in China, but he did not specify its locality and we failed to find it in this study.
description: Published as part of Wang, Qingyun & Li, Houhun, 2016, Review of the genus Scythropiodes Matsumura, 1931 (Lepidoptera, Lecithoceridae, Oditinae) from China, with a checklist of the world, pp. 301-329 in Zootaxa 4132 (3) on page 327, DOI: 10.11646/zootaxa.4132.3.1, http://zenodo.org/record/258365
Additional file 2: Figure S2. of Using record linkage to validate notification and laboratory data for a more accurate assessment of notifiable infectious diseases
Creators: name: Lim, Faye
name: Blyth, Christopher
name: Levy, Avram
name: Fathima, Parveen
name: Klerk, Nicholas De
name: Giele, Carolien
name: Moore, Hannah
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Proportion of IPD cases recorded in each dataset by year of specimen collection (2001–2012). WANIDD = Western Australian Notifiable Infectious Diseases Database; PathWest = PathWest Laboratory Medicine Western Australia Database. Percentages may not equal to 100 due to rounding. (DOCX 30 kb)
Idiocera (Idiocera) sziladyi Lackschewitz 1940
Creators: name: Ÿ, Jaroslav Star
name: Oosterbroek, Pjotr
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Limoniidae
Idiocera
Idiocera sziladyi

description: Idiocera (Idiocera) sziladyi (Lackschewitz, 1940)
Material examined: Spain: Ciudad Real, Rio Guadiana, 7 km SE Puebla de Don Rodrigo, 450 m, decid. forest & lakes, 26. IV.1994, 3 ɗ, 1Ψ, P. Oosterbroek & C. Hartveld leg., J. Starý det.
Distribution: Bulgaria, Czech Republic, Great Britain, Italy (Piemonte), Romania, Slovakia, Spain (Canary Is.), Algeria, Egypt. First record for Spain (mainland).
description: Published as part of Ÿ, Jaroslav Star & Oosterbroek, Pjotr, 2008, New records of West Palaearctic Limoniidae, Pediciidae and Cylindrotomidae (Diptera) from the collections of the Zoological Museum, Amsterdam, pp. 1-20 in Zootaxa 1922 on page 5, DOI: 10.5281/zenodo.184739
Scythropiodes malivora Meyrick 1930
Creators: name: Wang, Qingyun
name: Li, Houhun
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Scythropiodes
Scythropiodes malivora

description: Scythropiodes malivora (Meyrick, 1930)
Odites malivora Meyrick, 1930: 555. TL: China (Manchuria). TD: BMNH. Odites xenophaea Meyrick, 1931: 74.
Distribution. China (Anhui, Chongqing, Fujian, Gansu, Guangdong, Guizhou, Hebei, Heilongjiang, Henan, Hunan, Shandong, Sichuan, Tianjin, Yunnan, Zhejiang), Korea, Japan, Russia.
description: Published as part of Wang, Qingyun & Li, Houhun, 2016, Review of the genus Scythropiodes Matsumura, 1931 (Lepidoptera, Lecithoceridae, Oditinae) from China, with a checklist of the world, pp. 301-329 in Zootaxa 4132 (3) on page 327, DOI: 10.11646/zootaxa.4132.3.1, http://zenodo.org/record/258365
Scythropiodes oncinius Park et Wu 1997
Creators: name: Wang, Qingyun
name: Li, Houhun
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Scythropiodes
Scythropiodes oncinius

description: Scythropiodes oncinius Park et Wu, 1997
Scythropiodes oncinius Park et Wu, 1997: 33. TL: China (Hainan). TD: IZCAS. Distribution. China (Guangxi, Hainan).
description: Published as part of Wang, Qingyun & Li, Houhun, 2016, Review of the genus Scythropiodes Matsumura, 1931 (Lepidoptera, Lecithoceridae, Oditinae) from China, with a checklist of the world, pp. 301-329 in Zootaxa 4132 (3) on page 327, DOI: 10.11646/zootaxa.4132.3.1, http://zenodo.org/record/258365
Additional file 5: of Evolutionary origin of type IV classical cadherins in arthropods
Creators: name: Sasaki, Mizuki
name: Akiyama-Oda, Yasuko
name: Oda, Hiroki
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Figure S4. Schematic representation of detected sequences of C. multidentata related to classical cadherins. A. Nine reconstructed genomic sequences of C. multidentata that contain coding sequences closely related to those of Le1-cadherin. The sequences are available under the indicated accession numbers. B. Eight transcriptome contigs connected by raw reads. The sequences of these contigs are available under the indicated accession numbers. Contig33642 was modified by an insertion of 5 nucleotide bases (CCGGA) between the nucleotides 349 and 350 based on assessment of raw reads (asterisk). The assembled transcript and protein sequences are available in Additional file 12. Detected domain elements are shown. (PDF 108Â kb)
The effect of the photosensitizer curcumin and ascorbic acid in inactivating listeria monocytogenes and Escherichia coli O157:H7
Creators: name: Gao, Jingwen
Publisher: name: No Publisher Supplied
Year: 2018

description: Alternatives to the use of traditional chemical antimicrobials to improve food safety are needed. Curcumin is the principal curcuminoid of turmeric and approved for food use in Europe (E100) and the USA. Curcumin has been shown to have antimicrobial effects after activation by light and potential applications in treating cavities. The challenge of curcumin application is that curcumin will rapidly degrade in physiological and alkaline conditions, while it is more stable in slightly acidic conditions. Ascorbic acid (AA), which is also referred as vitamin C, is a GRAS substance commonly used in food. It can stabilize the curcumin by lowering pH and other unknown mechanisms. The purpose of this study was to evaluate the potential effect of ascorbic acid on the phototoxicity of photosensitizer curcumin in inactivating Listeria monocytogenes (gram-positive) and Escherichia coli O157:H7 (gram-negative) foodborne pathogens.    Curcumin was prepared by dissolving in 95% ethanol and diluting to desired concentrations with sterile distilled water (SDW). L-ascorbic acid was dissolved in SDW, filter sterilized, and diluted to the desired concentrations with SDW. The absorption spectrum of the curcumin with or without ascorbic acid was determined by UV/Vis spectrophotometer to ensure that no changes in absorption spectrum were found with different curcumin/AA combinations. The antimicrobial effects of the curcumin/AA were evaluated on both solid media using the modified Kirby Bauer method and liquid media. The effects of illumination time were studied in the liquid media (0, 1, 5, and 10 minutes). Overnight cultures of Listeria monocytogenes L008 and Escherichia coli O157:H7 86-24 were diluted to approximate 6.0 log CFU/mL. Curcumin, ascorbic acid, and cells were mixed and pre-incubated in the dark for 5 minutes. The mixture was then transferred to a 96-well plate for illumination treatment (450 - 455 nm, 0.13 W/cm2). The suspensions were subjected to microbiological analysis by direct plating method.     A potential effect was observed for ascorbic acid on enhancing the phototoxicity of photosensitizer curcumin against both types of pathogen. Curcumin with or without AA did not show any antimicrobial effects without light exposure. Conversely, no L. monocytogenes were detected when exposed to 5 μM of curcumin and 25 μg/mL of AA, after one-minute illumination. Escherichia coli O157:H7 was not detected following treatment with 50 μM of curcumin and 25 μg/mL of AA after 10-minute light exposure. Overall, curcumin and AA combination showed higher bacterial reduction than curcumin only.     This study demonstrated that curcumin/AA combination has promising inhibitory effects against Listeria monocytogenes and E. coli O157:H7, indicating a potential application as a decontamination intervention on food surfaces including meat, poultry and fresh produce.
Caranx lugubris Poey 1860
Creators: name: Andréfouët, Serge
name: Chen, Wei-Jen
name: Kinch, Jeff
name: Mana, Ralph
name: Russell, Barry C.
name: Tully, Dean
name: White, William T.
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Carangidae
Caranx
Caranx lugubris

description: Caranx lugubris Poey 1860 —Black jack
Status at New Ireland. First recorded from Feni Island by Kailola (1987b: 278); also reported from Lihir Group, Namatamai District by Fry et al. (2006: 129). Specimens observed at Kavieng fish market in 2004–2005 by Jeff Kinch during CFMDP Survey. Specimens photographed at Lissenung Island by Dietmar Amon on 12 June 2007; a video of a specimen taken at Martha's Shoal, off eastern New Hanover, at 7–41 m depth, St. KR 122, in 2014 (identified by Barry C. Russell).
Distribution and habitat. New Ireland: 1, 2, 5.—General distribution: Circumglobal in tropical and warm temerate oceans. Benthopelagic, 12–354 m depth. Marine.
description: Published as part of Andréfouët, Serge, Chen, Wei-Jen, Kinch, Jeff, Mana, Ralph, Russell, Barry C., Tully, Dean & White, William T., 2019, Checklist of the marine and estuarine fishes of New Ireland Province, Papua New Guinea, western Pacific Ocean, with 810 new records, pp. 1-360 in Zootaxa 4588 (1) on page 146, DOI: 10.11646/zootaxa.4588.1.1, http://zenodo.org/record/2988163
Additional file 6: Figure S5. of Evolutionary origin of type IV classical cadherins in arthropods
Creators: name: Sasaki, Mizuki
name: Akiyama-Oda, Yasuko
name: Oda, Hiroki
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences

description: Blast-based dot-plot comparisons between the amino acid sequence of Ha1- (A) or Ph1- (B) cadherin and those of DE-, Dp1-, Sm1-, Cm-, Le2-, DN- and Pn-cadherins. Green boxes indicate comparisons between the EC1-EC5 region of Ha1- or Ph1- cadherin and the EC6-EC10 regions of the type III cadherins or the corresponding region of Sm1-cadherin, which exhibited marked collinear similarities. Blue boxes indicate comparisons between the EC6-EC8 region of Ha1- or Ph1-cadherin and the EC11-EC16 regions of the type III cadherins or the corresponding region of Sm1-cadherin, which exhibited ambiguous collinear similarities. (PDF 2623Â kb)