cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Iridoid glycosides link with phenylpropanoids from Rehmannia glutinosa
Creators: name: Thu, Vu Kim
name: Nguyen Thi Thoa
name: Nguyen Thi Thu Hien
name: Hang, Dan Thi Thuy
name: Van Kiem, Phan
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Biochemistry
subject: Space Science
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: Plant Biology

description: Two new iridoid glycosides link with phenylpropanoids, rehmanniosides G (1) and H (2) along with 11 known compounds, 6-O-(E)-caffeoylajugol (3), 6-O-(E)-feruloylajugol (4), verbasoside (5), jionoside C (6), acteoside (7), leucosceptoside A (8), brachynoside (9), jionoside B1 (10), jionoside A1 (11), isoacteoside (12) and isomartynoside (13) were isolated from the roots of Rehmannia glutinosa (Gaertn.) DC. Their chemical structures were elucidated on the basis of extensive spectroscopic methods, including 1D, 2D NMR and mass spectra. Compounds 7 − 11 showed significant inhibitory α-glucosidase with IC50 values ranging from 261.4 to 408.7 μM (acarbose, IC50 of 204.2 ± 19.9 μM).
Stochastic embedding DFT: theory and application to p-nitroaniline
Creators: name: Li, Wenfei
name: Chen, Ming
name: Rabani, Eran
name: Baer, Roi
name: Neuhauser, Daniel
Publisher: name: arXiv
Year: 2019
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: Over this past decade, we combined the idea of stochastic resolution of identity with a variety of electronic structure methods. In our stochastic Kohn-Sham DFT method, the density is an average over multiple stochastic samples, with stochastic errors that decrease as the inverse square root of the number of sampling orbitals. Here we develop a stochastic embedding density functional theory method (se-DFT) that selectively reduces the stochastic error (specifically on the forces) for a selected sub-system(s). The motivation, similar to that of other quantum embedding methods, is that for many systems of practical interest the properties are often determined by only a small sub-system. In stochastic embedding DFT two sets of orbitals are used: a deterministic one associated with the embedded subspace, and the rest which is described by a stochastic set. The method is exact in the limit of large number of stochastic samples. We apply se-DFT to study a p-nitroaniline molecule in water, where the statistical errors in the forces on the system (the p-nitroaniline molecule) are reduced by an order of magnitude compared with non-embedding stochastic DFT.
Table S2
Creators: name: Ilott, Nicholas
Publisher: name: figshare
Year: 2021
Subjects: subject: 60102 Bioinformatics
subject: FOS: Computer and information sciences
subject: Computational Biology
subject: 60405 Gene Expression (incl. Microarray and other genome-wide approaches)
subject: FOS: Biological sciences

description: Cluster assignment of genes
Study of the isotropic contribution to the analysis of photoelectron diffraction experiments at the ALOISA beamline
Creators: name: Bruno, F.
name: Floreano, L.
name: Verdini, A.
name: Cvetko, D.
name: Gotter, R.
name: Morgante, A.
name: Canepa, M.
name: Terreni, S.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The angular distribution of the intensity in photoemission experiments is affected by electron diffraction patterns and by a smoothly varying ISO contribution originated by both intrumental details and physical properties of the samples. The origin of the various contributions to the ISO component has been identified since many years. Nonetheless in this work we present original developement of the ED analysis, which arises from the evolution of instrumental performance, in terms of analyzers positioning and angular resolution, as well as collimation and size of X-ray beams in third generation synchrotron sources. The analytical treatement of the instrumental factors is presented in detail for the end station of the ALOISA beamline (Trieste Synchrotron), where a wide variety of scattering geometries is available for ED experiments. We present here the basic formulae and their application to experimental data taken on the Fe/Cu3Au(001) system in order to highlight the role of the various parameters included in the distribution function. A specific model for the surface illumination has been developed as well as the overlayer thickness and surface roughness have been considered.
description: RevTex, nine pages with five eps figures; to be published in J. Electron Spectrosc. Relat. Phenom
Additional file 1: of “You have to know why you're doing this”: a mixed methods study of the benefits and burdens of self-tracking in Parkinson's disease
Creators: name: Riggare, Sara
name: Duncan, Therese Scott
name: Hvitfeldt, Helena
name: Hägglund, Maria
Publisher: name: figshare
Year: 2019
Subjects: subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy

description: Interview guide. (DOCX 15 kb)
Origin of enhanced dynamic nuclear polarization and all-optical nuclear magnetic resonance in GaAs quantum wells
Creators: name: Salis, G.
name: Awschalom, D. D.
name: Ohno, Y.
name: Ohno, H.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Time-resolved optical measurements of electron-spin dynamics in a (110) GaAs quantum well are used to study the consequences of a strongly anisotropic electron g-tensor, and the origin of previously discovered all-optical nuclear magnetic resonance. All components of the g-tensor are measured, and a strong anisotropy even along the in-plane directions is found. The amplitudes of the spin signal allow the study of the spatial directions of the injected spin and its precession axis. Surprisingly efficient dynamic nuclear polarization in a geometry where the electron spins are injected almost transverse to the applied magnetic field is attributed to an enhanced non-precessing electron spin component. The small absolute value of the electron g-factor combined with efficient nuclear spin polarization leads to large nuclear fields that dominate electron spin precession at low temperatures. These effects allow for sensitive detection of all-optical nuclear magnetic resonance induced by periodically excited quantum-well electrons. The mechanism of previously observed Delta m = 2 transitions is investigated and found to be attributable to electric quadrupole coupling, whereas Delta m = 1 transitions show signatures of both quadrupole and electron-spin induced magnetic dipole coupling.
description: 40 pages, 8 figures
On the challenges of data provenance in the Internet of Things
Creators: name: Elkhodr, Mahmoud
name: Mufti, Zuhaib Bari
Publisher: name: arXiv
Year: 2019
Subjects: subject: Cryptography and Security (cs.CR)
subject: FOS: Computer and information sciences

description: The IoT is described as a smart interactive environment where devices communicate together ubiquitously sometimes in the background, performing functions on behalf of the users and offering many advanced services to them. Examples range from simple smart home applications such as ambient intelligence and remote controlling functionalities to more advanced smart cities setups. A smart IoT city for instance will encompass a network of many interconnected networks where various sensors and actuators distributed across many areas of the city share information, create knowledge and trigger actuation events. In such a dynamic and rich environment, it is vital for security to trace the source of data and verify its origin. This where data provenance in the IoT come to play. This work attempts to explore requirements and applications of data provenance in the IoT and the challenges pertaining to its realisation.
description: 10 pages
Sunius discretus ASSING 2008
Creators: name: Assing, Volker
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Sunius
Sunius discretus

description: Sunius discretus ASSING, 2008
 Material examined:
 Tunisia: E exs., Le Kef (NHMW, cAss).
description: Published as part of Assing, Volker, 2008, Four new species and additional records of Palaearctic Sunius, with two new synonymies (Coleoptera: Staphylinidae: Paederinae), pp. 455-470 in Beiträge Zur Entomologie = Contributions to Entomology 58 (2) on page 459, DOI: 10.21248/contrib.entomol.58.2.455-470, http://zenodo.org/record/5364618
The Seiberg-Witten prepotential and the Euler class of the reduced moduli space of instantons
Creators: name: Flume, R.
name: Poghossian, R.
name: Storch, H.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The n-instanton contribution to the Seiberg-Witten prepotential of N=2 supersymmetric d=4 Yang Mills theory is represented as the integral of the exponential of an equivariantly exact form. Integrating out an overall scale and a U(1) angle the integral is rewritten as (4n-3) fold product of a closed two form. This two form is, formally, a representative of the Euler class of the Instanton moduli space viewed as a principal U(1) bundle, because its pullback under bundel projection is the exterior derivative of an angular one-form.
description: LaTex, 15 pages
Bound State Wave Functions through the Quantum Hamilton - Jacobi Formalism
Creators: name: Ranjani, S. Sree
name: Geojo, K. G.
name: Kapoor, A. K.
name: Panigrahi, P. K.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The bound state wave functions for a wide class of exactly solvable potentials are found utilizing the quantum Hamilton-Jacobi formalism. It is shown that, exploiting the singularity structure of the quantum momentum function, until now used only for obtaining the bound state energies, one can straightforwardly find both the eigenvalues and the corresponding eigenfunctions. After demonstrating the working of this approach through a number of solvable examples, we consider Hamiltonians, which exhibit broken and unbroken phases of supersymmetry. The natural emergence of the eigenspectra and the wave functions, in both the unbroken and the algebraically non-trivial broken phase, demonstrates the utility of this formalism.
description: replaced with the journal version
Table S10
Creators: name: Ilott, Nicholas
Publisher: name: figshare
Year: 2021
Subjects: subject: 60102 Bioinformatics
subject: FOS: Computer and information sciences
subject: Computational Biology
subject: 60405 Gene Expression (incl. Microarray and other genome-wide approaches)
subject: FOS: Biological sciences

description: Transcription factor enrichment results of genes that belong to cluster 4
Coarse-graining Molecular Systems by Spectral Matching
Creators: name: Nüske, Feliks
name: Boninsegna, Lorenzo
name: Clementi, Cecilia
Publisher: name: arXiv
Year: 2019
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: Dynamical Systems (math.DS)
subject: Probability (math.PR)
subject: Biological Physics (physics.bio-ph)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: Coarse-graining has become an area of tremendous importance within many different research fields. For molecular simulation, coarse-graining bears the promise of finding simplified models such that long-time simulations of large-scale systems become computationally tractable. While significant progress has been made in tuning thermodynamic properties of reduced models, it remains a key challenge to ensure that relevant kinetic properties are retained by coarse-grained dynamical systems. In this study, we focus on data-driven methods to preserve the rare-event kinetics of the original system, and make use of their close connection to the low-lying spectrum of the system's generator. Building on work by Crommelin and Vanden-Eijnden, SIAM Multiscale Model. Simul. (2011), we present a general framework, called spectral matching, which directly targets the generator's leading eigenvalue equations when learning parameters for coarse-grained models. We discuss different parametric models for effective dynamics and derive the resulting data-based regression problems. We show that spectral matching can be used to learn effective potentials which retain the slow dynamics, but also to correct the dynamics induced by existing techniques, such as force matching.
POSSIBILITIES OF ACQUIRING AND ENERGETIC USE OF BIOMASS IN COMMUNES IN MAŁOPOLSKA VOIVODESHIP
Creators: name: Sroka, Wojciech
name: Musiał, Wiesław
name: Sroka, Wojciech
name: Musiał, Wiesław
Publisher: name: Unknown
Year: 2016
Subjects: subject: Agribusiness
subject: Agricultural and Food Policy
subject: Agricultural Finance
subject: Community/Rural/Urban Development
subject: Consumer/Household Economics
subject: Crop Production/Industries
subject: Demand and Price Analysis
subject: Environmental Economics and Policy
subject: Farm Management
subject: Financial Economics
subject: Food Consumption/Nutrition/Food Safety
subject: Food Security and Poverty
subject: Health Economics and Policy
subject: Industrial Organization
subject: Institutional and Behavioral Economics
subject: International Development
subject: International Relations/Trade
subject: Labor and Human Capital
subject: Land Economics/Use
subject: Livestock Production/Industries
subject: Marketing
subject: FOS: Economics and business
subject: Political Economy
subject: Production Economics
subject: Productivity Analysis
subject: Public Economics
subject: Research and Development/Tech Change/Emerging Technologies
subject: Research Methods/ Statistical Methods
subject: Resource /Energy Economics and Policy
subject: Risk and Uncertainty
subject: Teaching/Communication/Extension/Profession
subject: energetic potential
subject: biomass
subject: Małopolska voivodeship

description: This analysis touches upon an evaluation and estimation of the potential of communes in Małopolska voivodeship in terms of energetic use of plant biomass. The research results showed that if biomass, in the form of straw and hay not used in agriculture and willow (salix) cultivated on lands out of agricultural production, was marked for energetic aims, the generation of about 8.3 PJ of energy would be possible. It was also pinpointed that within the group of communes with the highest potential of hay and willow for energetic use (25% of communes), environmental (the quality of production space) and economic factors (the area structure, and confi guration, etc.) will hinder the development of the biomass market. The same conditions which contributed to the regress of agriculture are seen as an obstacle to eff ective and profi table biomass production. The only real opportunity for development of the biomass market is seen in straw, which can be acquired in communes with the best natural and economic conditions.
Sunius cordobanus ASSING (Sierra de Cabra 2008
Creators: name: Assing, Volker
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Sunius
Sunius cordobanus

description: Sunius cordobanus ASSING, 2008
(Figs 29-35)
 Material examined:
 Spain: 9 exs., Córdoba, Sierra de Cabra, El Navazuelo Cabra, 4.IV.2007, leg. M. Baena (cAss).
One of the two paratypes is a male, not a female as indicated in the original description.
 Previously, the species was known only from the type locality, the Sierra de Córdoba to the north of the town of Córdoba in Andalucía. In view of the fact that the species of the S. seminiger group are generally local endemics, it seems quite remarkable that the above material was collected in the Sierra de Cabra, which is separated from the Sierra de Córdoba by a broad and deep valley. However, a thorough comparison of the male primary and secondary sexual characters yielded no significant differences, suggesting that both populations are conspecific. For illustrations of the external and the male sexual characters of the specimens from the Sierra de Cabra see Figs 29-35.
description: Published as part of Assing, Volker, 2008, Four new species and additional records of Palaearctic Sunius, with two new synonymies (Coleoptera: Staphylinidae: Paederinae), pp. 455-470 in Beiträge Zur Entomologie = Contributions to Entomology 58 (2) on pages 464-465, DOI: 10.21248/contrib.entomol.58.2.455-470, http://zenodo.org/record/5364618
Additional file 1 of CD16 expression on neutrophils predicts treatment efficacy of capecitabine in colorectal cancer patients
Creators: name: Lu, Yu
name: Huang, Yizhou
name: Huang, Lei
name: Xu, Yanjie
name: Wang, Zien
name: Li, Han
name: Zhang, Ting
name: Zhong, Ming
name: Gao, Wei-qiang
name: Zhang, Yan
Publisher: name: figshare
Year: 2020
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 1: Figure S1. Flow cytometry analyses of different myeloid cell subsets and representative CT scan in CRC patients. Peripheral venous blood from CRC patients received single-agent oral capecitabine adjuvant therapy was collected 6–9 months after the therapy and analyzed for myeloid cell-related markers. Frequencies of different myeloid cell subsets, including monocytes (CD11b+CD14+CD15−)(A), neutrophils (CD11b+CD15+CD14−or CD11b+CD66b+CD14−) (B and C) and MDSC(CD11b+ HLA-DR-\lowCD33+)(D) were compared between capecitabine-sensitive patients and capecitabine-resistant patients (n = 26 in capecitabine-sensitive group and n = 10 in capecitabine-resistant group, respectively). (E) CT scan was performed before the operation and during follow-up in same patients as that of Fig. 1b. Patient 1, normal operation site and no recurrence. Patient 27, unresectable metachronous lung metastases. Red arrows indicate primary tumor in situ or metastatic sites. (F) Peripheral blood CD11b+CD16+ myeloid cells from HDs and CRC patients before therapy were analyzed using flow cytometry. (G) CD66b, CD15, CD14, CD34 and CD117 expression on CD11b+CD16+ myeloid cells in (F) were analyzed by flow cytometry.
title: Randomized Construction Approaches for the Traveling Tournament Problem using Lower Bound Based Heuristics
Creators: name: Pace, Giulio
Publisher: name: TU Wien
Year: 2021
Subjects: subject: Traveling Tournament Problem
subject: Independent Lower Bound
subject: Capacitated Vehicle Route Problem
subject: Heuristic Optimization
subject: Ant Colony Optimization
subject: Beam Search

description: The traveling tournament problem (TTP) is an N P-hard combinatorial optimization problem famous for its practical hardness. The goal is to construct a double round robin sports league schedule for a certain number of teams, minimizing the sum of the total traveled distance over all teams. Each team starts and ends the season at their home venue and, when playing two away opponents in a row, will travel directly from the first venue to the second. There is a limit on the number of consecutive home and away games that a team is allowed to play and two opponents cannot face each other in two consecutive rounds. As of today, from the standard benchmark sets only instances up toten teams have been solved to optimality, those with 12 have not. The goal of this work is to study the behavior and augment constructive approaches withguidance by independent lower bound based heuristics formulated as capacitated vehicle routing problems (CVRPs). Building upon a state-space formulation for the TTP, we propose a MAX -MIN ant system algorithm, based on a successful application in the literature. Furthermore, we extend a randomized beam search approach to be able to tackle instances up to 26 teams by calculating the guidance heuristics approximately using Google OR-Tools.T he effects of numerous algorithmic parameters (e.g., using a restricted candidate list during construction, varying the beam width for beam search) when solving the CVRPs and the TTP itself are presented in a detailed computational study. Sensible choices of parameters are performed by manual tuning and further strengthened by automated parameter tuning. A final comparison is performed on the NL, NFL, galaxy, CIRC and Super benchmark instances up to 26 teams. Our ant colony optimization approach generally presents differences to the relative gaps of the best known solutions of around 11%, which leads us to conclude that a hybridization with a local search based method is necessary to reach competitive results. The beam search approach profits much more from the heuristic guidance and shows relative gap differences to state-of-the-art approaches not higher than 6% and in the mean of only 2.7%.
ECONOMIC ASPECTS OF THE IMPLEMENTATION OF THE RURAL DEVELOPMENT PROGRAMME 2014–2020. REMINISCENCES AND PROJECTION
Creators: name: Stępień, Sebastian
name: Czyżewski, Andrzej
name: Stępień, Sebastian
name: Czyżewski, Andrzej
Publisher: name: Unknown
Year: 2016
Subjects: subject: Agribusiness
subject: Agricultural and Food Policy
subject: Agricultural Finance
subject: Community/Rural/Urban Development
subject: Consumer/Household Economics
subject: Crop Production/Industries
subject: Demand and Price Analysis
subject: Environmental Economics and Policy
subject: Farm Management
subject: Financial Economics
subject: Food Consumption/Nutrition/Food Safety
subject: Food Security and Poverty
subject: Health Economics and Policy
subject: Industrial Organization
subject: Institutional and Behavioral Economics
subject: International Development
subject: International Relations/Trade
subject: Labor and Human Capital
subject: Land Economics/Use
subject: Livestock Production/Industries
subject: Marketing
subject: FOS: Economics and business
subject: Political Economy
subject: Production Economics
subject: Productivity Analysis
subject: Public Economics
subject: Research and Development/Tech Change/Emerging Technologies
subject: Research Methods/ Statistical Methods
subject: Resource /Energy Economics and Policy
subject: Risk and Uncertainty
subject: Teaching/Communication/Extension/Profession
subject: rural areas
subject: Poland
subject: RDP
subject: budget
subject: tasks
subject: assessment

description: The second pillar of the Common Agricultural Policy is an important element of support for Polish rural areas, due to the need to improve the competitiveness of agricultural producers, to transform the employment structure, to boost infrastructure development and to implement tasks related to the protection of the environment. Thus, the size of the funds of the Rural Development Programme (RDP) for 2014–2020 and their allocation to different tasks is essential for the future of rural areas. The aim of the article was to evaluate the RDP for 2014–2020 from the point of view of the potential economic consequences of its implementation. This rating was made in two areas: the budget, and the construction of selected activities. Data on the budget and the allocation of funds in the new financial period indicate that the RDP limits expenditures on some of the objectives, primarily related to infrastructure and entrepreneurship. The priority actions are, however, pro-investment and modernization, and improving the position of farmers in the food chain. There are also programs of a social nature, aimed at small farms and activities with low added value (e.g. less favored areas, or LFA). Reducing the budget of the RDP forced implementation of some solutions, e.g. degressive payments and limits on the area and economic size of farms; thereby both the smallest and larger farms could be excluded from part of the support
Thrips orientalis
Creators: name: Masumoto, Masami
name: Okajima, Shûji
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Thysanoptera
Thripidae
Thrips
Thrips orientalis

description: Thrips orientalis (Bagnall)
(Figs. 171–178)
 Isoneurothrips orientalis Bagnall, 1915: 593.
 Female macroptera. Body uniformly dark brown, antecostal ridge dark; antennal segment III brownish yellow; fore wings including clavus almost uniformly brown. Head (Fig. 171) weakly rounded at cheeks, weakly sculptured within ocellar triangle. Ocellar setae III on margin of ocellar triangle. Postocular setae I and III much shorter than ocellar setae III, II and IV minute. Antennae (Fig. 172) 7-segmented. Pronotum (Fig. 175) distinctly sculptured with transverse striae, with about 30 discal setae; posteroangular setae 2 pairs, setae I shorter than setae II; posteromarginal setae 2 or 3 pairs. Metascutum (Fig. 173) with equiangular reticulations bearing small inner wrinkles; median pair of setae far from anterior margin; CPS absent. Fore wing first vein without long gap in setal row, 7–11 setae at distal half; clavus with subapical setae longer than apical setae. Abdominal tergites II to VIII (Fig. 174, 175) with lines of sculpture almost not extending to mesad of S2 setae; tergites II to VII with S1 setae minute; tergite II with four lateral marginal setae, fourth setae often displaced onto pleurotergite; tergite VIII without posteromarginal comb medially, small microtrichia present only laterally; tergite IX with 2 pairs of CPS; sternite I with two minute microsetae anteromedially; sternites II with 0–2 discal setae; sternites III to VI (Fig. 176) usually with two to seven discal setae; sternite VII with no discal setae and S1 setae far from posterior margin; pleurotergites without discal setae and ciliate microtrichia.
 Male macroptera. Body colour similar to female. Antennal segment VI with slightly more setae on dorsal surface than in female. Abdominal tergite IX (Fig. 177) with S1 setae at level of S2 setae and longer than S2 setae, closer to S2 setae than each other; sternites without discal setae; sternites III to VII (Fig. 178) each with a large transverse pore plate; sternite IX with posteroangular setae stout.
 Specimens examined. JAPAN, Ryukyus, Ishigaki-jima Is., 7 females & 33 males (TUA).
 Distribution. Japan (Ryukyus), widespread in the Oriental Region, Australia, New Caledonia, Hawaii, Trinidad, Florida.
 Biology. This species is found on many kinds of flowers.
 Comments. Mound (2005) recognized this species and its related species as the orientalis -group.
description: Published as part of Masumoto, Masami & Okajima, Shûji, 2013, Review of the genus  Thrips  and related genera (Thysanoptera, Thripidae) from Japan, pp. 1-65 in Zootaxa 3678 (1) on page 44, DOI: 10.11646/zootaxa.3678.1.1, http://zenodo.org/record/10098369
Thermodynamics and Kinetics of Folding of a Small Peptide
Creators: name: Hansmann, Ulrich H. E.
name: Onuchic, Jose N.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Condensed Matter (cond-mat)
subject: Quantitative Biology (q-bio)
subject: FOS: Physical sciences
subject: FOS: Biological sciences

description: We study the thermodynamics and kinetics of folding for a small peptide. Our data rely on Monte Carlo simulations where the interactions among all atoms are taken into account. Monte Carlo kinetics is used to study folding of the peptide at suitable temperatures. The results of these canonical simulations are compared with that of a generalized-ensemble simulation. Our work demonstrates that concepts of folding which were developed in the past for minimalist models hold also for this peptide when simulated with an all-atom force field.
Additional file 7: of Disruption of the Lotus japonicus transporter LjNPF2.9 increases shoot biomass and nitrate content without affecting symbiotic performances
Creators: name: Sol, Stefano
name: Valkov, Vladimir
name: Rogato, Alessandra
name: MĂŠlanie Noguero
name: Gargiulo, Laura
name: Mele, Giacomo
name: Benoit Lacombe
name: Chiurazzi, Maurizio
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Table S3. Measures for average cell size determination from epidermis layers of wild type and ljnpf2.9â 1 superior and inferior lamina. (DOCX 17 kb)
Visualizing Topology of Real-Energy Gapless Phase Arising from Exceptional Point
Creators: name: Yang, X. M.
name: Wang, P.
name: Jin, L.
name: Song, Z.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Optics (physics.optics)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The discovery of novel topological phase advances our knowledge of nature and stimulates the development of applications. In non-Hermitian topological systems, the topology of band touching exceptional points is very important. Here we propose a real-energy topological gapless phase arising from exceptional points in one dimension, which has identical topological invariants as the topological gapless phase arising from degeneracy points. We develop a graphic approach to characterize the topological phases, where the eigenstates of energy bands are mapped to the graphs on a torus. The topologies of different phases are visualized and distinguishable; and the topological gapless edge state with amplification appropriate for topological lasing exists in the nontrivial phase. These results are elucidated through a non-Hermitian Su-Schrieffer-Heeger ladder. Our findings open new way for identifying topology phase of matter from visualizing the eigenstates.
description: 10 pages, 3 figures + 2 pages, 1 figure
Nuclear magnetic resonance spectroscopy with a superconducting flux qubit
Creators: name: Miyanishi, Koichiro
name: Matsuzaki, Yuichiro
name: Toida, Hiraku
name: Kakuyanagi, Kosuke
name: Negoro, Makoto
name: Kitagawa, Masahiro
name: Saito, Shiro
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We theoretically analyze the performance of the nuclear magnetic resonance (NMR) spectroscopy with a superconducting flux qubit (FQ). Such NMR with the FQ is attractive because of the possibility to detect the relatively small number of nuclear spins in a local region ($\simμ$m) with low temperatures ($\sim$ mK) and low magnetic fields ($\sim$ mT), in which other types of quantum sensing schemes cannot easily access. A sample containing nuclear spins is directly attached on the FQ, and the FQ is used as a magnetometer to detect magnetic fields from the nuclear spins. Especially, we consider two types of approaches to NMR with the FQ. One of them is to use spatially inhomogeneous excitations of the nuclear spins, which are induced by a spatially asymmetric driving with radio frequency~(RF) pulses. Such an inhomogeneity causes a change in the DC magnetic flux penetrating a loop of the FQ, which can be detected by a standard Ramsey measurement on the FQ. The other approach is to use a dynamical decoupling on the FQ to measure AC magnetic fields induced by Larmor precession of the nuclear spins. In this case, neither a spin excitation nor a spin polarization is required since the signal comes from fluctuating magnetic fields of the nuclear spins. We calculate the minimum detectable density (number) of the nuclear spins for the FQ with experimentally feasible parameters. We show that the minimum detectable density (number) of the nuclear spins with these approaches is around $10^{21}$ /cm$^3$ ($10^8$) with an accumulation time of a second.
description: 13 pages, 11 figures
Table S5
Creators: name: Ilott, Nicholas
Publisher: name: figshare
Year: 2021
Subjects: subject: 60102 Bioinformatics
subject: FOS: Computer and information sciences
subject: Computational Biology
subject: 60405 Gene Expression (incl. Microarray and other genome-wide approaches)
subject: FOS: Biological sciences

description: GO Biological Pathways enrichment results of genes that belong to cluster 3
Quantum Topological Excitations: from the Sawtooth Lattice to the Heisenberg Chain
Creators: name: Blundell, S. A.
name: Nunez-Regueiro, M. D.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: The recently elucidated structure of the delafossite YCuO$_{2.5}$ reveals a Cu-O network with nearly independent $Δ$ chains having different interactions between the $s=1/2$ spins. Motivated by this result, we study the $Δ$ chain for various ratios $J_{\rm bb}/J_{\rm bv}$ of the base-base and base-vertex interactions. By exact diagonalization and extrapolation, we show that the elementary excitation spectrum, which (within numerical error) is the same for total spins $S_{\rm tot}=0$ and 1, has a gap only in the interval $0.4874(1) \leq J_{\rm bb}/J_{\rm bv} \leq 1.53(1)$. The gap is dispersionless for $J_{\rm bb}/J_{\rm bv}=1$, but has increasing $k$-dependence as $J_{\rm bb}/J_{\rm bv}$ moves away from unity, related to the instability of dimers in the ground state.
description: 4 pages, 6 figures (revtex twocolumn)
Sunius vaulogeri
Creators: name: Assing, Volker
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Sunius
Sunius vaulogeri

description: Sunius vaulogeri (COIFFAIT, 1973)
 Material examined:
 Algeria: 10 exs., " Dj. Babor, de Vauloger / Collection H. Coiffait " (MNHNP, cAss).
 According to the original description of S. vaulogeri, the type material was collected in "Teniet el Had, Algérie ", which is far away from the Djebel Babor. Since the available data suggest that the North African representatives of the S. seminiger group are all local endemics (ASSING 2008), it seems probable that either the type material or the above specimens were mislabelled.
description: Published as part of Assing, Volker, 2008, Four new species and additional records of Palaearctic Sunius, with two new synonymies (Coleoptera: Staphylinidae: Paederinae), pp. 455-470 in Beiträge Zur Entomologie = Contributions to Entomology 58 (2) on pages 466-467, DOI: 10.21248/contrib.entomol.58.2.455-470, http://zenodo.org/record/5364618
THE DIVERSIFICATION OF THE ECONOMIC SITUATION OF THE EU COUNTRIES’ FARMS (BASED ON FADN)
Creators: name: Średzińska, Joanna
name: Średzińska, Joanna
Publisher: name: Unknown
Year: 2016
Subjects: subject: Agribusiness
subject: Agricultural and Food Policy
subject: Agricultural Finance
subject: Community/Rural/Urban Development
subject: Consumer/Household Economics
subject: Crop Production/Industries
subject: Demand and Price Analysis
subject: Environmental Economics and Policy
subject: Farm Management
subject: Financial Economics
subject: Food Consumption/Nutrition/Food Safety
subject: Food Security and Poverty
subject: Health Economics and Policy
subject: Industrial Organization
subject: Institutional and Behavioral Economics
subject: International Development
subject: International Relations/Trade
subject: Labor and Human Capital
subject: Land Economics/Use
subject: Livestock Production/Industries
subject: Marketing
subject: FOS: Economics and business
subject: Political Economy
subject: Production Economics
subject: Productivity Analysis
subject: Public Economics
subject: Research and Development/Tech Change/Emerging Technologies
subject: Research Methods/ Statistical Methods
subject: Resource /Energy Economics and Policy
subject: Risk and Uncertainty
subject: Teaching/Communication/Extension/Profession
subject: economic situation
subject: farms
subject: FADN
subject: cluster analysis

description: The aim of the paper was to present the economic situation of farms in the countries of the EU at two diff erent moments in time, and to attempt to assess changes in their situations in the considered period. Analyses were carried out on the basis of FADN data. The object of the study was the economic situation, including production potential, production and economic results and fi nancial indicators. Based on selected characteristics, cluster analysis was performed for 2004 and 2013 and the economic situations of created typological groups was presented. It was found that in both the given years agriculture in the EU countries can be divided into several types. In the studied decade, convergence in the economic situation of farms in the EU was observed. Most Czech, Estonian, and Latvian entities benefi ted from this process.
Half a Percent of Labels is Enough: Efficient Animal Detection in UAV Imagery using Deep CNNs and Active Learning
Creators: name: Kellenberger, Benjamin
name: Marcos, Diego
name: Lobry, Sylvain
name: Tuia, Devis
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: We present an Active Learning (AL) strategy for re-using a deep Convolutional Neural Network (CNN)-based object detector on a new dataset. This is of particular interest for wildlife conservation: given a set of images acquired with an Unmanned Aerial Vehicle (UAV) and manually labeled gound truth, our goal is to train an animal detector that can be re-used for repeated acquisitions, e.g. in follow-up years. Domain shifts between datasets typically prevent such a direct model application. We thus propose to bridge this gap using AL and introduce a new criterion called Transfer Sampling (TS). TS uses Optimal Transport to find corresponding regions between the source and the target datasets in the space of CNN activations. The CNN scores in the source dataset are used to rank the samples according to their likelihood of being animals, and this ranking is transferred to the target dataset. Unlike conventional AL criteria that exploit model uncertainty, TS focuses on very confident samples, thus allowing a quick retrieval of true positives in the target dataset, where positives are typically extremely rare and difficult to find by visual inspection. We extend TS with a new window cropping strategy that further accelerates sample retrieval. Our experiments show that with both strategies combined, less than half a percent of oracle-provided labels are enough to find almost 80% of the animals in challenging sets of UAV images, beating all baselines by a margin.
description: In press at IEEE Transactions on Geoscience and Remote Sensing (TGRS)
Sunius baboricus ASSING 2008
Creators: name: Assing, Volker
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Sunius
Sunius baboricus

description: Sunius baboricus ASSING, 2008
 Material examined:
 Algeria: 5 exs., Djebel Babor, leg. de Vauloger (MNHNP, cAss).
description: Published as part of Assing, Volker, 2008, Four new species and additional records of Palaearctic Sunius, with two new synonymies (Coleoptera: Staphylinidae: Paederinae), pp. 455-470 in Beiträge Zur Entomologie = Contributions to Entomology 58 (2) on page 467, DOI: 10.21248/contrib.entomol.58.2.455-470, http://zenodo.org/record/5364618
Fluctuation Effects on the Physical Properties of Cd2Re2O7 Near 200 K
Creators: name: Jin, R.
name: He, J.
name: Thompson, J. R.
name: Chisholm, M. F.
name: Sales, B. C.
name: Mandrus, D.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: Experimental investigation of the resistivity $ρ$, susceptibility $χ$, specific heat C$_p$, and Hall coefficient R$_H$ of the pyrochlore Cd$_2$Re$_2$O$_7$ reveals the presence of a continuous phase transition of uncertain origin with critical temperature T* = 200 K. Electron and X-ray diffraction measurements indicate that a commensurate structural transformation accompanies the changes in the electronic properties, implying that lattice as well as electronic degrees of freedom are involved in the transition. Remarkable scaling relationships between $ρ$, $χ$, and C$_p$ are observed, indicating that fluctuations are crucial in the transition regime. Scenarios involving both spin and ionic density fluctuations are considered in the evaluation of the data. Although the observed structural transition suggests that ionic density fluctuations are likely to be important, a scaling relationship between $ρ$ and $χ$ over a wide temperature range suggests that spin fluctuations may be playing a role as well.
description: 4 pages, 4 figures
Table S4
Creators: name: Ilott, Nicholas
Publisher: name: figshare
Year: 2021
Subjects: subject: 60102 Bioinformatics
subject: FOS: Computer and information sciences
subject: Computational Biology
subject: 60405 Gene Expression (incl. Microarray and other genome-wide approaches)
subject: FOS: Biological sciences

description: GO Biological Pathways enrichment results of genes that belong to cluster 2
Lower bound on the radii of circular orbits in the extremal Kerr black-hole spacetime
Creators: name: Hod, Shahar
Publisher: name: arXiv
Year: 2025
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: It is often stated in the physics literature that maximally-spinning Kerr black-hole spacetimes are characterized by near-horizon co-rotating circular geodesics of radius $r_{\text{circular}}$ with the property $r_{\text{circular}}\to r^+_{\text{H}}$, where $r_{\text{H}}$ is the horizon radius of the extremal black hole. Based on the famous Thorne hoop conjecture, in the present compact paper we provide evidence for the existence of a non-trivial lower bound ${r_{\text{circular}-r_{\text{H}}}\over{r_{\text{H}}}}\gtrsim (μ/M)^{1/2}$ on the radii of circular orbits in the extremal Kerr black-hole spacetime, where $μ/M$ is the dimensionless mass ratio which characterizes the composed black-hole-orbiting-particle system.
description: 6 pages
Additional file 7: of CCR6+ group 3 innate lymphoid cells accumulate in inflamed joints in rheumatoid arthritis and produce Th17 cytokines
Creators: name: Takaki-Kuwahara, Ayako
name: Yojiro Arinobu
name: Kohta Miyawaki
name: Hisakata Yamada
name: Tsuzuki, Hirofumi
name: Irino, Kensuke
name: Ayano, Masahiro
name: Kimoto, Yasutaka
name: Mitoma, Hiroki
name: Mitsuteru Akahoshi
name: Tsukamoto, Hiroshi
name: Horiuchi, Takahiko
name: Niiro, Hiroaki
name: Akashi, Koichi
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Marine Biology
subject: Hematology

description: Table S1. List of antibodies used in flow cytometry (DOCX 23 kb)
COMPARATIVE ANALYSIS OF BEHAVIOURS RELATED TO FUNCTIONAL FOODS AMONG SELECTED YOUNG CONSUMERS IN POLAND AND GERMANY
Creators: name: Zegan, Magdalena
name: Michota-Katulska, Ewa
name: Styczeń, Marta
name: Zegan, Magdalena
name: Michota-Katulska, Ewa
name: Styczeń, Marta
Publisher: name: Unknown
Year: 2016
Subjects: subject: Agribusiness
subject: Agricultural and Food Policy
subject: Agricultural Finance
subject: Community/Rural/Urban Development
subject: Consumer/Household Economics
subject: Crop Production/Industries
subject: Demand and Price Analysis
subject: Environmental Economics and Policy
subject: Financial Economics
subject: Food Consumption/Nutrition/Food Safety
subject: Food Security and Poverty
subject: Health Economics and Policy
subject: Industrial Organization
subject: Institutional and Behavioral Economics
subject: International Development
subject: International Relations/Trade
subject: Labor and Human Capital
subject: Land Economics/Use
subject: Livestock Production/Industries
subject: Marketing
subject: FOS: Economics and business
subject: Political Economy
subject: Production Economics
subject: Productivity Analysis
subject: Public Economics
subject: Research and Development/Tech Change/Emerging Technologies
subject: Research Methods/ Statistical Methods
subject: Resource /Energy Economics and Policy
subject: Risk and Uncertainty
subject: Teaching/Communication/Extension/Profession
subject: functional foods
subject: young consumers’ attitudes
subject: Poland
subject: Germany

description: Nutrition is one of the key factors infl uencing human health. Consuming foods that either naturally contain or have been enriched with bioactive substances may aid the organism’s proper development and functioning and, most importantly, be a vital element in the prophylaxis of many non-communicable diseases as well as improve general sense of well-being. The aim of the study was to compare behaviours related to functional foods among a selected group of young people. The survey was conducted among 153 purposively selected young consumers from Poland and Germany in March/April 2015. An original survey questionnaire was employed. IBM SPSS Statistics ver. 23 software was used for statistical analysis (chi-squared test p < 0.05). The term “functional foods” was largely unknown among the respondents. A defi nite majority of the survey participants reported having bought and consumed products that, in fact, belong to this group of foods. The main source of information on the topic of functional foods was the Internet. While buying these products, respondents from both countries chiefl y took into account the price, the quality and the list of ingredients. The results point to the need to popularize information about functional foods using trustworthy sources, in order to foster nutritional awareness. Consumer knowledge is the basis for the positive perception and acceptance of health-promoting foods and for making rational dietary choices.
Effect of grain-boundary diffusion process on the geometry of the grain microstructure of Nd$-$Fe$-$B nanocrystalline magnets
Creators: name: Titov, Ivan
name: Barbieri, Massimiliano
name: Bender, Philipp
name: Peral, Inma
name: Kohlbrecher, Joachim
name: Saito, Kotaro
name: Pipich, Vitaliy
name: Yano, Masao
name: Michels, Andreas
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Hot-deformed anisotropic Nd$-$Fe$-$B nanocrystalline magnets have been subjected to the grain-boundary diffusion process (GBDP) using a $\mathrm{Pr}_{70}\mathrm{Cu}_{30}$ eutectic alloy. The resulting grain microstructure, consisting of shape-anisotropic Nd$-$Fe$-$B nanocrystals surrounded by a Pr$-$Cu-rich intergranular grain-boundary phase, has been investigated using unpolarized small-angle neutron scattering (SANS) and very small-angle neutron scattering (VSANS). The neutron data have been analyzed using the generalized Guinier-Porod model and by computing model-independently the distance distribution function. We find that the GBDP results in a change of the geometry of the scattering particles:~In the small-$q$ regime the scattering from the as-prepared sample exhibits a slope of about $2$, which is characteristic for the scattering from two-dimensional platelet-shaped objects, while the GBDP sample manifests a slope of about $1$, which is the scattering signature of one-dimensional elongated objects. The evolution of the Porod exponent indicates the smoothing of the grain surfaces due to the GBDP, which is accompanied by an increase of the coercivity.
description: 6 pages, 4 figures, 1 table