cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Interviewing – Supplemental material for Saving Costs for Hospitals Through Medical Clowning: A Study of Hospital Staff Perspectives on the Impact of the Medical Clown
Creators: name: Gomberg, Jack
name: Raviv, Amnon
name: Fenig, Eyal
name: Meiri, Noam
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 111403 Paediatrics
subject: FOS: Clinical medicine

description: Interviewing for Saving Costs for Hospitals Through Medical Clowning: A Study of Hospital Staff Perspectives on the Impact of the Medical Clown by Jack Gomberg, Amnon Raviv, Eyal Fenig and Noam Meiri in Clinical Medicine Insights: Pediatrics
Marsh_Open_Practices_Disclosure – Supplemental material for Informant Discrepancies in Judgments About Change During Mental Health Treatments
Creators: name: Jessecae K. Marsh
name: Zeveney, Andrew S.
name: Reyes, Andres De Los
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental material, Marsh_Open_Practices_Disclosure for Informant Discrepancies in Judgments About Change During Mental Health Treatments by Jessecae K. Marsh, Andrew S. Zeveney and Andres De Los Reyes in Clinical Psychological Science
Additional file 2 of Differential cardiomyocyte transcriptomic remodeling during in vitro Trypanosoma cruzi infection using laboratory strains provides implications on pathogenic host responses
Creators: name: Candray-Medina, Katherine-Sofia
name: Nakagama, Yu
name: Ito, Masamichi
name: Nakagama, Shun
name: Tshibangu-Kabamba, Evariste
name: Takeda, Norihiko
name: Sugiura, Yuki
name: Nitahara, Yuko
name: Michimuko-Nagahara, Yu
name: Kaku, Natsuko
name: Onizuka, Yoko
name: Arias, Carmen-Elena
name: Mejia, Maricela
name: Alas, Karla
name: Peña, Susana
name: Maejima, Yasuhiro
name: Komuro, Issei
name: Nakajima-Shimada, Junko
name: Kido, Yasutoshi
Publisher: name: figshare
Year: 2024
Subjects: subject: Physical Sciences not elsewhere classified
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Additional file 2: Figure S1. Representative images of Trypanosoma cruzi-infected cardiomyocytes reflecting infectivity rate differences among strains. Diff-Quick staining. Scale bars represent 50 µm. Figure S2. Remodeling of gene expression profiles in cardiomyocytes treated with Tumor Necrosis Factor-α (Positive control) at 24- and 48-h post-infection (hpi). Y axes indicate the gene expression level of the non-infected control cardiomyocyte, while X-axes indicate gene expression levels of Tumor Necrosis Factor-treated cardiomyocytes. The black dashed line, and upper and lower red dashed lines show the line of identity, and the 0.5- and 2-fold-change thresholds, respectively. Each dot represents a differentially expressed gene (DEG). Blue and pink shaded areas represent down- and up-regulated DEGs, respectively. Figure S3. Cytoscape network visualization of the Mus musculus ‘ErBb-’ and ‘MAPK signaling’ pathways. Network showing the commonly upregulated genes of both pathways (orange nodes) and their two closest neighbors (light blue nodes). Red and purple circles enclose genes that belong to the ‘ErBb-’ and ‘MAPK signaling’ pathways, respectively. Edges (black lines) represent links between genes.
PUL910687 Supplemental Material - Supplemental material for The filling defect of pulmonary artery, an imaging finding what we should know
Creators: name: Liu, Min
name: Tao, Xin Cao
name: Zhai, Zhenguo
name: Ma, Zhanhong
name: Zhu, Li
name: Luo, Jie
Publisher: name: SAGE Journals
Year: 2020
Subjects: Cardiology
Respiratory Diseases

description: Supplemental material, PUL910687 Supplemental Material for The filling defect of pulmonary artery, an imaging finding what we should know by Min Liu, Xin Cao Tao, Zhenguo Zhai, Zhanhong Ma, Li Zhu and Jie Luo in Pulmonary Circulation
Central kpc of Andromeda. I. Dynamical modelling
Creators: name: Cros, Lucie
name: Combes, Françoise
name: Melchior, Anne-Laure
name: Martin, Thomas
Publisher: name: arXiv
Year: 2024
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: The Andromeda galaxy (M31) is the most nearby giant spiral galaxy, an opportunity to study with high resolution dynamical phenomena occurring in nuclear disks and bulges, able to explain star formation quenching, and galaxy evolution through collisions and tides. Multi-wavelength data have revealed in the central kpc of M31 strong dynamical perturbations, with an off-centered tilted disk and ring, coinciding with a dearth of atomic and molecular gas. Our goal to understand the origin of these perturbations is to propose a dynamical model, reproducing the global features of the observations. We are reporting about integral field spectroscopy of the ionized gas with H$α$ and [NII] obtained with SITELLE, the optical imaging Fourier transform spectrometer (IFTS) at the Canada France Hawaii telescope (CFHT). Using the fully sampled velocity field of ionized gas, together with the more patchy molecular gas velocity field, previously obtained with the CO lines at IRAM-30m telescope, and the dust photometry, we identify three dynamical components in the gas, the main disk, a tilted ring and a nuclear warped disk. A mass model of the central kpc is computed, essentially from the stellar nuclear disk and bulge, with small contributions of the main stellar and gaseous disk, and dark matter halo. The kinematics of the ionized and molecular gas is then computed in this potential, and the velocity field confronted to observations. The best fit helps to determine the physical parameters of the three identified gas components, size, morphology and geometrical orientation. The results are compatible with a recent head-on collision with a M-32 like galaxy, as previously proposed. The kinematical observations correspond to a dynamical re-orientation of the perturbed nuclear disk, through warps and tearing disk into ring, following the collision.
description: 15 pages, 22 figures, submitted to A&A
SAQ_supplement_mat – Supplemental material for Are you 110% sure? Modeling of fractions and proportions in strategy and management research
Creators: name: Villadsen, Anders R
name: Wulff, Jesper N
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 150310 Organisation and Management Theory
subject: FOS: Economics and business

description: Supplemental material, SAQ_supplement_mat for Are you 110% sure? Modeling of fractions and proportions in strategy and management research by Anders R Villadsen and Jesper N Wulff in Strategic Organization
Collective decision-making with heterogeneous biases: Role of network topology and susceptibility
Creators: name: Sevinchan, Yunus
name: Sarkanych, Petro
name: Tenenbaum, Abi
name: Holovatch, Yurij
name: Romanczuk, Pawel
Publisher: name: arXiv
Year: 2024
Subjects: subject: Physics and Society (physics.soc-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Adaptation and Self-Organizing Systems (nlin.AO)
subject: FOS: Physical sciences

description: The ability of groups to make accurate collective decisions depends on a complex interplay of various factors, such as prior information, biases, social influence, and the structure of the interaction network. Here, we investigate a spin model that accounts for heterogeneous preferences and enables control over the non-linearity of social interactions. Building on previous results for complete graphs and regular 2D lattices, we investigate how the modification of network topology towards (sparse) random graphs can affect collective decision-making. We use two different measures of susceptibility to assess the responsiveness of the system to internal and external perturbations. In particular, we investigate how the maximum of susceptibility depends on network connectivity. Based on our findings, we discuss how collective systems might adapt to changes in environmental fluctuations by adjusting their network structure or the nature of their social interactions in order to remain in the region of maximal susceptibility.
description: 11 pages, 11 figures
DS_10.1177_0363546519854286 – Supplemental material for Frontal Plane Loading Characteristics of Medial Collateral Ligament Strain Concurrent With Anterior Cruciate Ligament Failure
Creators: name: Schilaty, Nathan D.
name: Bates, Nathaniel A.
name: Krych, Aaron J.
name: Hewett, Timothy E.
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 110314 Orthopaedics
subject: FOS: Clinical medicine
subject: 110604 Sports Medicine
subject: FOS: Health sciences
subject: 110323 Surgery

description: Supplemental material, DS_10.1177_0363546519854286 for Frontal Plane Loading Characteristics of Medial Collateral Ligament Strain Concurrent With Anterior Cruciate Ligament Failure by Nathan D. Schilaty, Nathaniel A. Bates, Aaron J. Krych and Timothy E. Hewett in The American Journal of Sports Medicine
Supplemental_Materials_coping_patient_and_partner_rebuttal_07032019_JFO – Supplemental material for Ketogenic diet treatment as adjuvant to standard treatment of glioblastoma multiforme: a feasibility and safety study
Creators: name: Louw, Elles J. T. M. Van Der
name: Olieman, Joanne F.
name: Bemt, Patricia M. L. A. Van Den
name: Bromberg, Jacoline E. C.
name: Hoop, Esther Oomen-De
name: Neuteboom, Rinze F.
name: Coriene E. Catsman-Berrevoets
name: Vincent, Arnaud J. P. E.
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 111299 Oncology and Carcinogenesis not elsewhere classified
subject: FOS: Clinical medicine
subject: 111702 Aged Health Care
subject: FOS: Health sciences
subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: 110203 Respiratory Diseases

description: Supplemental material, Supplemental_Materials_coping_patient_and_partner_rebuttal_07032019_JFO for Ketogenic diet treatment as adjuvant to standard treatment of glioblastoma multiforme: a feasibility and safety study by Elles J. T. M. van der Louw, Joanne F. Olieman, Patricia M. L. A. van den Bemt, Jacoline E. C. Bromberg, Esther Oomen-de Hoop, Rinze F. Neuteboom, Coriene E. Catsman-Berrevoets and Arnaud J. P. E. Vincent in Therapeutic Advances in Medical Oncology
Additional_Table_S2_GO_Enrichment_P_value_1 – Supplemental material for Integrative Analysis of Genome-Wide Association Studies and DNA Methylation Profile Identified Genetic Control Genes of DNA Methylation for Kashin-Beck Disease
Creators: name: Li, Ping
name: Wu, Cuiyan
name: Guo, Xiong
name: Wen, Yan
name: Liu, Li
name: Liang, Xiao
name: Du, Yanan
name: Zhang, Lu
name: Ma, Mei
name: Cheng, Shiqiang
name: Cheng, Bolun
name: Wang, Sen
name: Zhang, Feng
Publisher: name: SAGE Journals
Year: 2019
Subjects: Orthopaedics
Sports Medicine
Surgery
Biological Sciences not elsewhere classified

description: Supplemental material, Additional_Table_S2_GO_Enrichment_P_value_1 for Integrative Analysis of Genome-Wide Association Studies and DNA Methylation Profile Identified Genetic Control Genes of DNA Methylation for Kashin-Beck Disease by Ping Li, Cuiyan Wu, Xiong Guo, Yan Wen, Li Liu, Xiao Liang, Yanan Du, Lu Zhang, Mei Ma, Shiqiang Cheng, Bolun Cheng, Sen Wang and Feng Zhang in CARTILAGE
supplementary_material – Supplemental material for An expeditious one-pot synthesis of pyrido[2,3-d]pyrimidines using Fe3O4–ZnO–NH2–PW12O40 nanocatalyst
Creators: name: Farokhian, Pegah
name: Mamaghani, Manouchehr
name: Mahmoodi, Nosrat Ollah
name: Tabatabaeian, Khalil
name: Abdollah Fallah Shojaie
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 91299 Materials Engineering not elsewhere classified
subject: FOS: Materials engineering

description: Supplemental material, supplementary_material for An expeditious one-pot synthesis of pyrido[2,3-d]pyrimidines using Fe3O4–ZnO–NH2–PW12O40 nanocatalyst by Pegah Farokhian, Manouchehr Mamaghani, Nosrat Ollah Mahmoodi, Khalil Tabatabaeian and Abdollah Fallah Shojaie in Journal of Chemical Research
Discovery of a PRS associated with FRB 20240114A
Creators: name: Bruni, G.
name: Piro, L.
name: Yang, Y. -P.
name: Palazzi, E.
name: Nicastro, L.
name: Rossi, A.
name: Savaglio, S.
name: Maiorano, E.
name: Zhang, B.
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We present the discovery of the fourth persistent radio source (PRS) associated with a fast radio burst (FRB). Following previous indications of a candidate PRS associated with FRB20240114A, we performed deep VLBA observations at 5 GHz to test the presence of a compact radio source within the uncertainty position of this FRB ($\pm$200 mas). We detect a component $\sim$50 mas northwards the nominal position provided by the PRECISE collaboration. The corresponding radio luminosity, together with the Faraday rotation measure provided by previous observations of the FRB, locate this PRS in the expected region of the $L$ vs |RM| relation for the nebular model, further supporting it. The comparison of the measured flux density with the values collected at lower frequency by previous studies indicates a possible steepening of the radio spectrum in the 1-5 GHz range. Optical observations performed with the LBT could reveal that the FRB and its PRS lie at $\sim$1 kpc from the centre of the host galaxy, which is a dwarf sub-solar metallicity starburst galaxy with SFR $\sim 1 M_\odot\;\mathrm{yr^{-1}}$ and stellar mass $M\sim10^8 M_\odot$.
description: Accepted for publication in A&A Letters
The Jet Paths of Radio AGN and their Cluster Weather
Creators: name: Vardoulaki, E.
name: Backöfer, V.
name: Finoguenov, A.
name: Vazza, F.
name: Comparat, J.
name: Gozaliasl, G.
name: Whittam, I. H.
name: Hale, C. L.
name: Weaver, J. R.
name: Koekemoer, A. M.
name: Collier, J. D.
name: Frank, B.
name: Heywood, I.
name: Sekhar, S.
name: Taylor, A. R.
name: Pinjarkar, S.
name: Hardcastle, M. J.
name: Shimwell, T.
name: Hoeft, M.
name: White, S. V.
name: An, F.
name: Tabatabaei, F.
name: Randriamanakoto, Z.
name: Filipovic, M. D.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We studied bent radio sources within X-ray galaxy groups in the COSMOS and XMM-LSS fields, using radio data from the MeerKAT International GHz Tiered Extragalactic Explorations data release 1 (MIGHTEE-DR1) at 1.2-1.3 GHz (angular resolutions of 8.9" and 5"; ~ 3.5 and 5.5 uJy/beam). Bent radio active galactic nuclei (AGN) were identified via visual inspection. Our analysis included 19 bent radio AGN in the COSMOS field and 17 in the XMM-LSS field which lie within X-ray galaxy groups (2x10^13 >= M200c/Msun = 3x10^14). We investigated the relationship between their bending angle (BA) - the angle formed by the jets or lobes of two-sided radio sources associated with AGN - and properties of their host galaxies and large-scale environment probed by the X-ray galaxy groups. Our key findings are: a) In the XMM-LSS field, we observed a strong correlation between the linear projected size of the bent AGN, the group halo mass, and the projected distance from the group centre. This trend, consistent with previous studies, was not detected in the COSMOS sample. b) The BA is a function of environmental density, with the type of medium playing a significant role. Additionally, at z <= 0.5 we found a higher number of bent sources (BA <= 160deg) compared to higher redshifts (z ~ 1), by a factor of >1.5. This trend aligns with magnetohydrodynamic simulations, which suggest that denser environments and longer interaction times at lower redshifts contribute to this effect. Comparison with the literature suggests that jet bending in galaxy groups within the redshift range 0.1 < z < 1.2 is primarily driven by ram pressure exerted on the jets, which occurs during quiescent phases of AGN activity. This study underscores the role of environmental interactions in shaping the morphology of radio AGN within galaxy groups, providing insights into the interplay between large-scale structure and AGN physics.
description: 25 pages, 12 Figures, 9 Tables, 1 Appendix; submitted to A&A
An upper limit on the frequency of short-period black hole companions to Sun-like stars
Creators: name: Green, Matthew J.
name: Ziv, Yoav
name: Rix, Hans-Walter
name: Maoz, Dan
name: Hamoudy, Ikram
name: Mazeh, Tsevi
name: Faigler, Simchon
name: Lam, Marco C.
name: El-Badry, Kareem
name: Hume, George
name: Munday, James
name: Yarker, Paige
Publisher: name: arXiv
Year: 2024
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Stellar-mass black holes descend from high-mass stars, most of which had stellar binary companions. However, the number of those binary systems that survive the binary evolution and black hole formation is uncertain by multiple orders of magnitude. The survival rate is particularly uncertain for massive stars with low-mass companions, which are thought to be the progenitors of most black hole X-ray binaries. We present a search for close black hole companions (separations less than 20 solar radii) to AFGK-type stars in TESS, i.e. the non-accreting counterparts to and progenitors of low-mass X-ray binaries. Such black holes can be detected by the tidally induced ellipsoidal deformation of the visible star, and the ensuing photometric light-curve variations. From an initial sample of 4.7 million TESS stars, we have selected 457 candidates for such variations. However, spectroscopic followup of 250 of them shows that none are consistent with a close black hole companion. On the basis of this non-detection, we determine (2 $σ$ confidence) that fewer than one in $10^5$ Solar-type stars in the Solar neighbourhood host a short-period black hole companion. This upper limit is in tension with a number of ``optimistic'' population models in the literature that predict short-period black hole companions around one in $10^{4-5}$ stars. Our limits are still consistent with other models that predict only a few in $10^{7-8}$.
description: 16 pages, 14 figures. Accepted to A&A
Appendix_2_Methods_and_Rationale_online_supp – Supplemental material for Traffic Lights Intervention Reduces Therapeutic Inertia: A Randomized Controlled Trial in Multiple Sclerosis Care
Creators: name: Saposnik, Gustavo
name: Mamdani, Muhammad
name: Montalban, Xavier
name: Terzaghi, Maria
name: Silva, Berenice
name: Saladino, Maria Laura
name: Tobler, Philippe N.
name: Caceres, Fernando
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 111799 Public Health and Health Services not elsewhere classified
subject: FOS: Health sciences

description: Supplemental material, Appendix_2_Methods_and_Rationale_online_supp for Traffic Lights Intervention Reduces Therapeutic Inertia: A Randomized Controlled Trial in Multiple Sclerosis Care by Gustavo Saposnik, Muhammad Mamdani, Xavier Montalban, Maria Terzaghi, Berenice Silva, Maria Laura Saladino, Philippe N. Tobler and Fernando Caceres in MDM Policy & Practice
Supplemental Material4 - Supplemental material for Mass spectral analysis of acetylated peptides: Implications in proteomics
Creators: name: Chandra, Deepika
name: P Gayathri
name: Mudita Vats
name: R Nagaraj
name: MK Ray
name: MV Jagannadham
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 91299 Materials Engineering not elsewhere classified
subject: FOS: Materials engineering

description: Supplemental material, Supplemental Material4 for Mass spectral analysis of acetylated peptides: Implications in proteomics by Deepika Chandra, P Gayathri, Mudita Vats, R Nagaraj, MK Ray and MV Jagannadham in European Journal of Mass Spectrometry
CONSORT_2010_Checklist__cmpretzsch_falff – Supplemental material for The effect of cannabidiol (CBD) on low-frequency activity and functional connectivity in the brain of adults with and without autism spectrum disorder (ASD)
Creators: name: Pretzsch, Charlotte M
name: Voinescu, Bogdan
name: Mendez, Maria A
name: Wichers, Robert
name: Ajram, Laura
name: Ivin, Glynis
name: Heasman, Martin
name: Williams, Steven
name: Murphy, Declan GM
name: Daly, Eileen
name: McAlonan, Gráinne M
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)

description: Supplemental material, CONSORT_2010_Checklist__cmpretzsch_falff for The effect of cannabidiol (CBD) on low-frequency activity and functional connectivity in the brain of adults with and without autism spectrum disorder (ASD) by Charlotte M Pretzsch, Bogdan Voinescu, Maria A Mendez, Robert Wichers, Laura Ajram, Glynis Ivin, Martin Heasman, Steven Williams, Declan GM Murphy, Eileen Daly and Gráinne M McAlonan in Journal of Psychopharmacology
MSJ852092_supplementary_material – Supplemental material for T cells producing GM-CSF and IL-13 are enriched in the cerebrospinal fluid of relapsing MS patients
Creators: name: Ghezzi, Laura
name: Cantoni, Claudia
name: Cignarella, Francesca
name: Bollman, Bryan
name: Cross, Anne H
name: Salter, Amber
name: Galimberti, Daniela
name: Cella, Marina
name: Piccio, Laura
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: 111702 Aged Health Care
subject: FOS: Health sciences

description: Supplemental material, MSJ852092_supplementary_material for T cells producing GM-CSF and IL-13 are enriched in the cerebrospinal fluid of relapsing MS patients by Laura Ghezzi, Claudia Cantoni, Francesca Cignarella, Bryan Bollman, Anne H Cross, Amber Salter, Daniela Galimberti, Marina Cella and Laura Piccio in Multiple Sclerosis Journal
MSJ858604_supplemental_material – Supplemental material for Rituximab treatment for multiple sclerosis
Creators: name: Ineichen, Benjamin V
name: Moridi, Thomas
name: Granberg, Tobias
name: Piehl, Fredrik
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: 111702 Aged Health Care
subject: FOS: Health sciences

description: Supplemental material, MSJ858604_supplemental_material for Rituximab treatment for multiple sclerosis by Benjamin V Ineichen, Thomas Moridi, Tobias Granberg and Fredrik Piehl in Multiple Sclerosis Journal
Perspective: Time irreversibility in systems observed at coarse resolution
Creators: name: Dieball, Cai
name: Godec, Aljaž
Publisher: name: arXiv
Year: 2024
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Soft Condensed Matter (cond-mat.soft)
subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: A broken time-reversal symmetry, i.e. broken detailed balance, is central to non-equilibrium physics and is a prerequisite for life. However, it turns out to be quite challenging to unambiguously define and quantify time-reversal symmetry (and violations thereof) in practice, that is, from observations. Measurements on complex systems have a finite resolution and generally probe low-dimensional projections of the underlying dynamics, which are well known to introduce memory. In situations where many microscopic states become "lumped" onto the same observable "state" or when introducing "reaction coordinates" to reduce the dimensionality of data, signatures of a broken time-reversal symmetry in the microscopic dynamics become distorted or masked. In this perspective we highlight why in defining and discussing time-reversal symmetry, and quantifying its violations, the precise underlying assumptions on the microscopic dynamics, the coarse graining, and further reductions, are not a technical detail. These assumptions decide whether the conclusions that are drawn are physically sound or inconsistent. We summarize recent findings in the field and reflect upon key challenges.
Supplemental_material - A Vascular Aging Index as Independent Predictor of Cardiovascular Events and Total Mortality in an Elderly Urban Population
Creators: name: Wadström, Benjamin Nilsson
name: Abd-Al Hakim Fatehali
name: Engström, Gunnar
name: Nilsson, Peter M.
Publisher: name: SAGE Journals
Year: 2019
Subjects: Cardiology

description: Supplemental_material for A Vascular Aging Index as Independent Predictor of Cardiovascular Events and Total Mortality in an Elderly Urban Population by Benjamin Nilsson Wadström, Abd-al Hakim Fatehali, Gunnar Engström and Peter M. Nilsson in Angiology
Additional file 4 of Prioritized polycystic kidney disease drug targets and repurposing candidates from pre-cystic and cystic mouse Pkd2 model gene expression reversion
Creators: name: Wilk, Elizabeth J.
name: Howton, Timothy C.
name: Fisher, Jennifer L.
name: Oza, Vishal H.
name: Brownlee, Ryan T.
name: McPherson, Kasi C.
name: Cleary, Hannah L.
name: Yoder, Bradley K.
name: George, James F.
name: Mrug, Michal
name: Lasseigne, Brittany N.
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Cancer
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 4: Comparing Pre-Cystic and Cystic Transcriptomic Signatures. Results and discussion text comparing signatures derived from the differential expression of the pre-cystic and cystic mouse kidney data.
Reviewer_1_v.2 – Supplemental material for The efficacy of adding budesonide/formoterol to ipratropium plus theophylline in managing severe chronic obstructive pulmonary disease: an open-label, randomized study in China
Creators: name: Huang, Kewu
name: Guo, Yanfei
name: Kang, Jian
name: An, Li
name: Zheng, Zeguang
name: Ma, Lijun
name: Peng, Liping
name: Wang, Hongyang
name: Su, Rong
name: Itoh, Yohji
name: Wang, Chen
Publisher: name: SAGE Journals
Year: 2019
Subjects: Aged Health Care
Pharmacology and Pharmaceutical Sciences not elsewhere classified
Respiratory Diseases

description: Supplemental material, Reviewer_1_v.2 for The efficacy of adding budesonide/formoterol to ipratropium plus theophylline in managing severe chronic obstructive pulmonary disease: an open-label, randomized study in China by Kewu Huang, Yanfei Guo, Jian Kang, Li An, Zeguang Zheng, Lijun Ma, Liping Peng, Hongyang Wang, Rong Su, Yohji Itoh and Chen Wang in Therapeutic Advances in Respiratory Disease
Additional file 1 of Prioritized polycystic kidney disease drug targets and repurposing candidates from pre-cystic and cystic mouse Pkd2 model gene expression reversion
Creators: name: Wilk, Elizabeth J.
name: Howton, Timothy C.
name: Fisher, Jennifer L.
name: Oza, Vishal H.
name: Brownlee, Ryan T.
name: McPherson, Kasi C.
name: Cleary, Hannah L.
name: Yoder, Bradley K.
name: George, James F.
name: Mrug, Michal
name: Lasseigne, Brittany N.
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Cancer
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Summary of Data Sets used in this Study.
Study of the deuterons emission time in pp collisions at the LHC via kaon-deuteron correlations
Creators: name: Doce, Oton Vázquez
name: Mihaylov, Dimitar
name: Fabbietti, Laura
Publisher: name: arXiv
Year: 2024
Subjects: subject: Nuclear Experiment (nucl-ex)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The femtoscopy correlation between positively charged kaons and deuterons measured in pp collisions at $\sqrt{s}=$ 13 TeV at the LHC with the ALICE experiment is employed to determine the upper limit for the time delay of the deuteron emission with respect to all other hadrons. Two scenarios are considered: the first assumes that deuterons form following the decays of short-lived strong resonances, while the second assumes that deuteron production occurs simultaneously with all other primary hadrons. For both scenarios, an additional delay time can be introduced using the CECA source model and its upper limit can be extracted by fitting the femtoscopy correlation. Two models are considered for the strong K$^+$d final state interaction. For the scenario where deuterons production is affected by baryonic resonances the upper limit of the time delay is 2.25 fm/c, while for the primary production scenario the upper limit is 4.75 fm/c. These results support the hypothesis of an early formation of the deuteron as an extended, weakly bound composite object in ultra-relativistic proton-proton collisions at the LHC.
Open-source library for performance-portable neutrino reaction rates: Application to neutron star mergers
Creators: name: Chiesa, Leonardo
name: Bhattacharyya, Maitraya
name: Mazzini, Filippo
name: Guercilena, Federico Maria
name: Perego, Albino
name: Radice, David
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: A realistic and detailed description of neutrinos in binary neutron star (BNS) mergers is essential to build reliable models of such systems. To this end, we present BNS_NURATES, a novel open-source numerical library designed for the efficient on-the-fly computation of neutrino interactions, with particular focus on regimes relevant to BNS mergers. BNS_NURATES targets a higher level of accuracy and realism in the implementation of commonly employed reactions by accounting for relevant microphysics effects on the interactions, such as weak magnetism and mean field effects. It also includes the contributions of inelastic neutrino scattering off electrons and positrons and (inverse) nucleon decays. Finally, it offers a way to reconstruct the neutrino distribution function in the framework of moment-based transport schemes. As a first application, we compute both energy-dependent and energy-integrated neutrino emissivities and opacities for conditions extracted from a BNS merger simulation with M1 transport scheme. We find some qualitative differences in the results when considering the impact of the additional relevant reactions and of microphysics effects. For example, neutrino-electron/positron scattering reactions are important for the energy exchange of heavy-type neutrinos as they do not undergo semileptonic charged-current processes, when $μ^\pm$ are not accounted for. Moreover, weak magnetism and mean field effects can significantly modify the contribution of $β$ processes for electron-type (anti)neutrinos, increasing at the same time the importance of (inverse) neutron decays. The improved treatment for the reaction rates also modifies the conditions at which neutrinos decouple from matter in the system, potentially affecting their emission spectra.
description: 28 pages, 15 figures, published in PRD. The BNS_NURATES library is publicly available at: https://github.com/RelNucAs/bns_nurates
Compiling the surface code to crossbar spin qubit architectures
Creators: name: Pataki, Dávid
name: Pályi, András
Publisher: name: arXiv
Year: 2024
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Spin qubits in quantum dots provide a promising platform for realizing large-scale quantum processors since they have a small characteristic size of a few tens of nanometers. One difficulty of controlling e.g., a few thousand qubits on a single chip is the large number of control lines. The crossbar control architecture has been proposed to reduce the number of control lines exploiting shared control among the qubits. Here, we compile the surface code cycle to a pulse sequence that can be executed in the crossbar architecture. We decompose the quantum circuits of the stabilizer measurements in terms of native gates of the spin-qubit architecture. We provide a routing and scheduling protocol, and construct a gate voltage pulse sequence for the stabilizer measurement cycle. During this protocol, coherent phase errors can occur on idle qubits, due to the operational constraints of the crossbar architecture. We characterize these crosstalk errors during the stabilizer measurement cycle, and identify an experimentally relevant parameter regime where the crosstalk errors are below the surface code threshold. Our results provide design guidelines for near-term qubit experiments with crossbar architectures.
description: 15 pages main text, + 6 pages appendix and bibliography, 14 figures
On the detectability and parameterisation of binary stars through spectral energy distributions
Creators: name: Jadhav, Vikrant V.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: This study examines the characterization of binary star systems using Spectral Energy Distributions (SEDs), a technique increasingly essential with the rise of large-scale astronomical surveys. Binaries can emit flux at different regions of the electromagnetic spectrum, making SEDs a valuable tool in identifying and characterising unresolved binary systems. However, fitting multi-component models to SEDs and recovering accurate stellar parameters remains challenging due to nonlinear fitting methods and inherent uncertainties in the data and the spectral models. In this work, a simplified approach was used to model stars as blackbodies and we tested the accuracy of parameter recovery from SEDs, particularly focusing on secondary stars. We explored a range of primary properties, filter sets and noise models. Special attention was given to two case studies: one examining the detection of unresolved binaries using Gaia XP spectra, and the other focusing on identifying hotter companions in binary systems using UV-IR SEDs. Although an analytic prescription for recoverability is not possible, we present a simplified model and the necessary Python tools to analyse any potential binary system. Finally, we propose using blackbody models as a baseline for error estimation in SED fitting, offering a potential method for measuring fitting errors and improving the precision of binary star characterisations.
description: Accepted to Journal of Astrophysics & Astronomy. sed-analysis-tools is available on GitHub https://github.com/jikrant3/sed-analysis-tools/
Additional file 2 of Prioritized polycystic kidney disease drug targets and repurposing candidates from pre-cystic and cystic mouse Pkd2 model gene expression reversion
Creators: name: Wilk, Elizabeth J.
name: Howton, Timothy C.
name: Fisher, Jennifer L.
name: Oza, Vishal H.
name: Brownlee, Ryan T.
name: McPherson, Kasi C.
name: Cleary, Hannah L.
name: Yoder, Bradley K.
name: George, James F.
name: Mrug, Michal
name: Lasseigne, Brittany N.
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Cancer
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 2: Pathway Enrichment of Pre-cysticvs CysticKidney Differential Gene Expression. Bubbleplots showing enrichment for genes uniquely differentially expressed in the A) pre-cystic data set and B) both cystic data sets, where point size is the ratio of query genes to pathway gene set size.
Hallmarks of Deception in Asset-Exchange Models
Creators: name: Blom, Kristian
name: Makarov, Dmitrii E.
name: Godec, Aljaž
Publisher: name: arXiv
Year: 2024
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Popular Physics (physics.pop-ph)
subject: Physics and Society (physics.soc-ph)
subject: FOS: Physical sciences

description: We investigate the transient and steady-state dynamics of the Bennati-Dragulescu-Yakovenko money game in the presence of probabilistic cheaters, who can misrepresent their financial status by claiming to have no money. We derive the steady-state wealth distribution per player analytically, and show how the presence of hidden cheaters can be inferred from the relative variance of wealth per player. In scenarios with a finite number of cheaters amidst an infinite pool of honest players, we identify a critical probability of cheating at which the total wealth owned by the cheaters experiences a second-order discontinuity. Below this point, the transition probability to lose money is larger than the probability to gain; conversely, above this point, the direction is reversed. We further establish a threshold cheating probability at which cheaters collectively possess half of the total wealth in the game. Lastly, we provide bounds on the rate at which both cheaters and honest players can gain or lose wealth, contributing to a deeper understanding of deception in asset exchange models.
Additional file 5 of Prioritized polycystic kidney disease drug targets and repurposing candidates from pre-cystic and cystic mouse Pkd2 model gene expression reversion
Creators: name: Wilk, Elizabeth J.
name: Howton, Timothy C.
name: Fisher, Jennifer L.
name: Oza, Vishal H.
name: Brownlee, Ryan T.
name: McPherson, Kasi C.
name: Cleary, Hannah L.
name: Yoder, Bradley K.
name: George, James F.
name: Mrug, Michal
name: Lasseigne, Brittany N.
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Cancer
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 5: Transcriptomic Signatures for Pre-cystic and Cystic Disease Signature Reversion. Heatmaps of rlog gene expression counts for genes selected for transcriptomic reversion signaturesshowing complete linkage hierarchical clustering of gene expression and samples for A) pre-cystic P70, B) cystic P21, and C) cystic P28. D) Venn diagram of transcriptomic reversion signatures from the 3 data sets showing overlap and unique genes for each signature.
Optical Levitation of Arrays of Microspheres
Creators: name: Siegel, Benjamin
name: Afek, Gadi
name: Lowe, Cecily
name: Wang, Jiaxiang
name: Tseng, Yu-Han
name: Penny, T. W.
name: Moore, David C.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: Levitated optomechanical systems are rapidly becoming leading tools for precision sensing of forces and accelerations acting on particles in the femtogram to nanogram mass range. These systems enable a high level of control over the sensor's center-of-mass motion, rotational degrees of freedom, and electric charge state. For many sensing applications, extending these techniques to arrays of sensors enables rejection of correlated noise sources and increases sensitivity to interactions that may be too rare or weak to detect with a single particle. Here we present techniques capable of trapping defect free, two-dimensional arrays of more than 25 microspheres in vacuum. These techniques provide independent control of the optical potential for each sphere. Simultaneous imaging of the motion of all spheres in the array is demonstrated using camera-based imaging, with optimized object tracking algorithms reaching a displacement sensitivity below 1 nm/$\surd$Hz. Such arrays of levitated microspheres may find applications ranging from inertial sensing to searches for weakly interacting particles such as dark matter.
description: 10 pages, 6 figures
Additional file 3 of Prioritized polycystic kidney disease drug targets and repurposing candidates from pre-cystic and cystic mouse Pkd2 model gene expression reversion
Creators: name: Wilk, Elizabeth J.
name: Howton, Timothy C.
name: Fisher, Jennifer L.
name: Oza, Vishal H.
name: Brownlee, Ryan T.
name: McPherson, Kasi C.
name: Cleary, Hannah L.
name: Yoder, Bradley K.
name: George, James F.
name: Mrug, Michal
name: Lasseigne, Brittany N.
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Cancer
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 3: Differential Expression Analysis. Treemaps of A) pre-cystic P70, B) cystic P21, and C) cystic P28 differentially expressed genes display enrichment nesting, with GO:BP parent terms consisting of largest boxes and enriched child terms reflecting enrichment term size nested within, for each signature.
Online_Appendix – Supplemental material for The disconcerting potential of online disinformation: Persuasive effects of astroturfing comments and three strategies for inoculation against them
Creators: name: Zerback, Thomas
name: Töpfl, Florian
name: Knöpfle, Maria
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 200199 Communication and Media Studies not elsewhere classified
subject: FOS: Media and communications

description: Supplemental material, Online_Appendix for The disconcerting potential of online disinformation: Persuasive effects of astroturfing comments and three strategies for inoculation against them by Thomas Zerback, Florian Töpfl and Maria Knöpfle in New Media & Society
Fermi Velocity Dependent Critical Current in Ballistic Bilayer Graphene Josephson Junctions
Creators: name: Sharma, Amis
name: Chen, Chun-Chia
name: McCourt, Jordan
name: Kim, Mingi
name: Watanabe, Kenji
name: Taniguchi, Takashi
name: Rokhinson, Leonid
name: Finkelstein, Gleb
name: Borzenets, Ivan
Publisher: name: arXiv
Year: 2024
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We perform transport measurements on proximitized, ballistic, bilayer graphene Josephson junctions (BGJJs) in the intermediate-to-long junction regime ($L>ξ$). We measure the device's differential resistance as a function of bias current and gate voltage for a range of different temperatures. The extracted critical current $I_{C}$ follows an exponential trend with temperature: $ \exp(-k_{B} T/ δE)$. Here $δE = \hbar ν_F /2πL $: an expected trend for intermediate-to-long junctions. From $δE$, we determine the Fermi velocity of the bilayer graphene, which is found to increase with gate voltage. Simultaneously, we show the carrier density dependence of $δE$, which is attributed to the quadratic dispersion of bilayer graphene. This is in contrast to single layer graphene Josephson junctions, where $δE$ and the Fermi velocity are independent of the carrier density. The carrier density dependence in BGJJs allows for additional tuning parameters in graphene-based Josephson Junction devices.
Supplemental Material, e_Figure_legends - Monocyte count and the risk for acute exacerbation of fibrosing interstitial lung disease: A retrospective cohort study
Creators: name: Kodai Kawamura
name: Ichikado, Kazuya
name: Anan, Keisuke
name: Yasuda, Yuko
name: Sekido, Yuko
name: Moritaka Suga
name: Ichiyasu, Hidenori
name: Sakagami, Takuro
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 111702 Aged Health Care
subject: FOS: Health sciences
subject: 110203 Respiratory Diseases
subject: FOS: Clinical medicine

description: Supplemental Material, e_Figure_legends for Monocyte count and the risk for acute exacerbation of fibrosing interstitial lung disease: A retrospective cohort study by Kodai Kawamura, Kazuya Ichikado, Keisuke Anan, Yuko Yasuda, Yuko Sekido, Moritaka Suga, Hidenori Ichiyasu and Takuro Sakagami in Chronic Respiratory Disease
Supplemental material for Functional and emotional outcomes after transient ischemic attack: A 12-month prospective controlled cohort study
Creators: name: Sackley, Catherine M
name: Mant, Jonathan
name: McManus, Richard J
name: Humphreys, Glyn
name: Sharp, Leslie
name: Mares, Kathryn
name: Savva, George M
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: Cardiology
subject: Medicine
subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine

description: Supplemental Material for Functional and emotional outcomes after transient ischemic attack: A 12-month prospective controlled cohort study by Catherine M Sackley, Jonathan Mant, Richard J McManus, Glyn Humphreys, Leslie Sharp, Kathryn Mares George M Savva in International Journal of Stroke
Additional file 1 of GCLiPP: global crosslinking and protein purification method for constructing high-resolution occupancy maps for RNA binding proteins
Creators: name: Zhu, Wandi S.
name: Litterman, Adam J.
name: Sekhon, Harshaan S.
name: Kageyama, Robin
name: Arce, Maya M.
name: Taylor, Kimberly E.
name: Zhao, Wenxue
name: Criswell, Lindsey A.
name: Zaitlen, Noah
name: Erle, David J.
name: Ansel, K. Mark
Publisher: name: figshare
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1:Fig S1. Comparison GCLiPP with eCLIP datasets. Fig S2. Overlap of GCLiPP peaks and cytosolic RBP eCLIP peaks. Fig S3. GCLiPP read coverage in primary mouse T cells. Fig S4. GCLiPP detects RBP binding of canonical polyadenylation signal. Fig S5. STAT6 expression in 3’UTR edited Jurkat cells and primary and primary human CD4 T cells.
ANaGRAM: A Natural Gradient Relative to Adapted Model for efficient PINNs learning
Creators: name: Schwencke, Nilo
name: Furtlehner, Cyril
Publisher: name: arXiv
Year: 2024
Subjects: subject: Machine Learning (cs.LG)
subject: Artificial Intelligence (cs.AI)
subject: Numerical Analysis (math.NA)
subject: Optimization and Control (math.OC)
subject: FOS: Computer and information sciences
subject: FOS: Mathematics
subject: I.2.8

description: In the recent years, Physics Informed Neural Networks (PINNs) have received strong interest as a method to solve PDE driven systems, in particular for data assimilation purpose. This method is still in its infancy, with many shortcomings and failures that remain not properly understood. In this paper we propose a natural gradient approach to PINNs which contributes to speed-up and improve the accuracy of the training. Based on an in depth analysis of the differential geometric structures of the problem, we come up with two distinct contributions: (i) a new natural gradient algorithm that scales as $\min(P^2S, S^2P)$, where $P$ is the number of parameters, and $S$ the batch size; (ii) a mathematically principled reformulation of the PINNs problem that allows the extension of natural gradient to it, with proved connections to Green's function theory.
description: accepted in ICLR 2025