cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Allochotes Westwood 1875
Creators: name: Murakami, Hiroyuki
name: Yamasako, Junsuke
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cleridae
Allochotes

description: Genus Allochotes Westwood, 1875
Allochotes Westwood, 1875: 241, type species: Allochotes bicolor Westwood, 1875 (subsequently designated by Chapin, 1924: 256).
Sisyrnophorus Waterhouse, 1876: 125, type species: Sisyrnophorus maculatus Waterhouse, 1876 (synonymized by Lohde, 1900: 97).
Sisynophorus [sic!]: Lewis, 1891: 210 (misspelling).
description: Published as part of Murakami, Hiroyuki & Yamasako, Junsuke, 2012, Two new species of the genus Allochotes (Coleoptera: Cleridae: Neorthopleurinae) from Taiwan, pp. 47-53 in Zootaxa 3564 on page 48, DOI: 10.5281/zenodo.210314
Additional file 1: Table S1. of The effectiveness of email-based exercises in promoting psychological wellbeing and healthy lifestyle: a two-year follow-up study
Creators: name: Torniainen-Holm, Minna
name: Pankakoski, Maiju
name: Lehto, Tuomas
name: Saarelma, Osmo
name: Mustonen, Pekka
name: Kaisla Joutsenniemi
name: Suvisaari, Jaana
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 60506 Virology
subject: FOS: Biological sciences

description: The themes of the emails. Table S2. Participation for different types of interventions. Table S3. Outcome variables in the intervention and controls groups at baseline, 2-month and 2-year follow-ups. Figure S1. Binge drinking in the intervention and controls groups over time. Figure S2. Daily smoking in the intervention and control groups over time. Figure S3. The proportion of participants doing physical exercise at least 3Â h per week in the intervention and control groups over time. Figure S4. The proportion of participants using vegetables or fruits daily in the intervention and control groups over time. Figure S5. Level of stress in the intervention group by adherence to the treatment protocol. Figure S6. Confidence in the future in the intervention group by adherence to the treatment protocol. Figure S7. Gratitude in the intervention group by adherence to the treatment protocol. (PDF 302 kb)
Laphria sackeni Banks 1917
Creators: name: Lavigne, Robert J.
name: Dennis, D. Steve
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Asilidae
Laphria
Laphria sackeni

description: Laphria sackeni (Banks, 1917)
Original Description: Dasyllis sackeni Banks, 1917. Published State Records: McAtee (1918) (as Laphria vultur Osten-Sacken). Published County Records: YNP.
Museum Records: None known.
description: Published as part of Lavigne, Robert J. & Dennis, D. Steve, 2017, A checklist of the Robber Flies (Insecta: Diptera: Asilidae) of Wyoming, USA, pp. 335-365 in Zootaxa 4238 (3) on page 352, DOI: 10.11646/zootaxa.4238.3.2, http://zenodo.org/record/345779
Additional file 2: of PARIHS revisited: from heuristic to integrated framework for the successful implementation of knowledge into practice
Creators: name: Harvey, Gill
name: Kitson, Alison
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer
subject: Plant Biology
subject: Computational Biology

description: Reflective questions that facilitators can use to think about key issues within the different dimensions of implementation. This file presents a tool for self-assessment that facilitators can use to consider their own strengths and areas for development in supporting implementation. (PDF 205 kb)
Additional file 1: of Estimating the current mean age of mothers at the birth of their first child from household surveys
Creators: name: Bongaarts, John
name: Blanc, Ann
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Evolutionary Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Science Policy
subject: Computational Biology

description: Estimating the mean age at first birth. Includes two equations that provide alternative estimates of the age-standardized mean age at first birth [25]. (DOCX 17Â kb)
Additional file 2: of iPSC-derived mesenchymal stromal cells are less supportive than primary MSCs for co-culture of hematopoietic progenitor cells
Creators: name: Vasko, Theresa
name: Frobel, Joana
name: Lubberich, Richard
name: Goecke, Tamme
name: Wagner, Wolfgang
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: Hematology

description: DNA methylation is in line with differential expression of VCAM1, CDH2, and LAMB1. DNA methylation levels of CpG dinucleotides in the genes VCAM1, CDH2, and LAMB1 were analyzed for bone marrow-derived MSCs, iPS-MSCs, and iPSCs using the Illumina 450 k BeadChip data (GSE17448 and GSE54767) as described in detail in our previous work [1]. DNA methylation level is given as β-value ranging from 0 (no methylation) to 1 (100 % methylation). Genomic location of the respective CpG sites and statistical significance of MSCs vs. iPS-MSCs are indicated (*P
Additional file 1: of Pangenome-wide and molecular evolution analyses of the Pseudomonas aeruginosa species
Creators: name: Jeanneth Mosquera-Rendón
name: Rada-Bravo, Ana
name: Cárdenas-Brito, Sonia
name: Corredor, Mauricio
name: Restrepo-Pineda, Eliana
name: Benítez-Páez, Alfonso
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Metadata associated with the 181 strains used in this study to reconstruct the P. aeruginosa pangenome. All the information regarding the genome size, ORF predicted, RNA genes, host, geographic location, virulence, and resistance genes were recovered from PATRIC database. NA indicates no information available. (PDF 808 kb)
Laphria sadales Walker 1849
Creators: name: Lavigne, Robert J.
name: Dennis, D. Steve
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Asilidae
Laphria
Laphria sadales

description: Laphria sadales Walker, 1849
Original Description: Laphria sadales Walker, 1849.
Published State Records: Adisoemarto (1967); Dennis et al. (2010); Geller-Grimm (2016) (Wyoming); Lavigne & Dennis (1994) (as Choerades sadales).
Published County Records: PA; TE; YNP.
Museum Records: PA (east entrance YNP); SU; TE.
description: Published as part of Lavigne, Robert J. & Dennis, D. Steve, 2017, A checklist of the Robber Flies (Insecta: Diptera: Asilidae) of Wyoming, USA, pp. 335-365 in Zootaxa 4238 (3) on page 353, DOI: 10.11646/zootaxa.4238.3.2, http://zenodo.org/record/345779
Investigating the potential of novel thiazole derivatives in treating Alzheimer’s and Parkinson’s diseases
Creators: name: Al Rahman Asfour, Abd
name: Evren, Asaf Evrim
name: Özkan, Begüm Nurpelin Sağlık
name: Yurttaş, Leyla
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Neuroscience
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified

description: The study aimed to investigate 12 novel thiazole compounds in the treatment of neurodegenerative disorders. The compounds produced were evaluated for their inhibitory efficacy against acetylcholinesterase (AChE), butyrylcholinesterase (BChE), and monoamine oxidases (MAOs). Among the compounds, 5d, 5e, and 5j showed the highest AChE inhibitory activity. The IC50 values for compounds are 0.223 ± 0.010 µM, 0.092 ± 0.003 µM, and 0.054 ± 0.002 µM, respectively. In addition, molecular docking analyses and molecular dynamic simulation were used to examine the interactions of these compounds with protein sites. The results suggest that thiazole-ring compounds could serve as a promising basis for the development of drugs aimed at treating neurodegenerative diseases (NDD), caused by Parkinson’s and Alzheimer’s diseases.
Laphria vivax Williston 1883
Creators: name: Lavigne, Robert J.
name: Dennis, D. Steve
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Asilidae
Laphria
Laphria vivax

description: Laphria vivax Williston, 1883
Original Description: Laphria vivax Williston, 1883. Published State Records: Evans (1970). Published County Records: TE.
Museum Records: None known.
description: Published as part of Lavigne, Robert J. & Dennis, D. Steve, 2017, A checklist of the Robber Flies (Insecta: Diptera: Asilidae) of Wyoming, USA, pp. 335-365 in Zootaxa 4238 (3) on page 353, DOI: 10.11646/zootaxa.4238.3.2, http://zenodo.org/record/345779
Additional file 1: of iPSC-derived mesenchymal stromal cells are less supportive than primary MSCs for co-culture of hematopoietic progenitor cells
Creators: name: Vasko, Theresa
name: Frobel, Joana
name: Lubberich, Richard
name: Goecke, Tamme
name: Wagner, Wolfgang
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Physiology
subject: Developmental Biology
subject: Marine Biology
subject: Hematology

description: Functional characterization of iPS-MSCs. (A) Phase contrast images of MSCs and iPS-MSCs: iPS-MSCs revealed similar fibroblastoid morphology as MSCs. (B) iPS-MSCs displayed similar immunophenotypic characteristics as primary MSCs (MFI = mean fluorescence intensity; mean ± S.D. of three biological replicates is presented; *P
MOESM2 of Effect of helium pre- or postconditioning on signal transduction kinases in patients undergoing coronary artery bypass graft surgery
Creators: name: Smit, Kirsten
name: Brevoord, Daniel
name: Hert, Stefan
name: Mol, Bas
name: Kerindongo, Raphaela
name: Dieren, Susan
name: Schlack, Wolfgang
name: Hollmann, Markus
name: Weber, Nina
name: Preckel, Benedikt
Publisher: name: Figshare
Year: 2016
Subjects: Space Science
Medicine
Cell Biology
Developmental Biology
Science Policy
Computational Biology

description: Additional file 2. Table of perioperative oxygen tension and hemoglobin.
MOESM1 of Effect of helium pre- or postconditioning on signal transduction kinases in patients undergoing coronary artery bypass graft surgery
Creators: name: Smit, Kirsten
name: Brevoord, Daniel
name: Hert, Stefan
name: Mol, Bas
name: Kerindongo, Raphaela
name: Dieren, Susan
name: Schlack, Wolfgang
name: Hollmann, Markus
name: Weber, Nina
name: Preckel, Benedikt
Publisher: name: Figshare
Year: 2016
Subjects: Medicine
Cell Biology
Science Policy
Computational Biology

description: Additional file 1. Mean differences of western blot data.
title: ÐÑÑÐ»ÐµÐ´Ð¾Ð²Ð°Ð½Ð¸Ðµ ÑÐ½ÐµÑÐ³ÐµÑÐ¸ÑÐµÑÐºÐ¸Ñ Ñ Ð°ÑÐ°ÐºÑÐµÑÐ¸ÑÑÐ¸Ðº ÑÐ»ÐµÐºÑÑÐ¾Ð¸Ð¼Ð¿ÑÐ»ÑÑÐ½Ð¾Ð³Ð¾ ÑÐ°Ð·ÑÑÑÐµÐ½Ð¸Ñ ÑÐµÑ Ð½Ð¾Ð³ÐµÐ½Ð½Ð¾Ð³Ð¾ ÑÑÑÑÑ
title: ÑÐ¿ÐµÑÐ¸Ð°Ð»ÑÐ½Ð¾ÑÑÑ 1.3.13. Ð­Ð»ÐµÐºÑÑÐ¾ÑÐ¸Ð·Ð¸ÐºÐ°, ÑÐ»ÐµÐºÑÑÐ¾ÑÐ¸Ð·Ð¸ÑÐµÑÐºÐ¸Ðµ ÑÑÑÐ°Ð½Ð¾Ð²ÐºÐ¸
titleType: Subtitle
Creators: name: ÐÐ»Ð¸Ð¼Ð¾Ð², ÐÐ½Ð´ÑÐµÐ¹
Publisher: name: Ð¡Ð°Ð½ÐºÑ-ÐÐµÑÐµÑÐ±ÑÑÐ³ÑÐºÐ¸Ð¹ Ð¿Ð¾Ð»Ð¸ÑÐµÑÐ½Ð¸ÑÐµÑÐºÐ¸Ð¹ ÑÐ½Ð¸Ð²ÐµÑÑÐ¸ÑÐµÑ ÐÐµÑÑÐ° ÐÐµÐ»Ð¸ÐºÐ¾Ð³Ð¾
Year: 2023
Subjects: ÐÐ±ÑÐ°Ð·Ð¸Ð²Ð½ÑÐµ Ð¼Ð°ÑÐµÑÐ¸Ð°Ð»Ñ
Ð­Ð»ÐµÐºÑÑÐ¸ÑÐµÑÐºÐ¸Ð¹ ÑÐ°Ð·ÑÑÐ´
ÐÐµÐ½ÐµÑÐ°ÑÐ¾ÑÑ
ÐÐµÑÐ°Ð»Ð»Ñ
ÑÐµÑ Ð½Ð¾Ð³ÐµÐ½Ð½Ð¾Ðµ ÑÑÑÑÑ
Ð´ÐµÐ·Ð¸Ð½ÑÐµÐ³ÑÐ°ÑÐ¸Ñ
ÑÐ»ÐµÐºÑÑÐ¾Ð¸Ð¼Ð¿ÑÐ»ÑÑÐ½Ð¾Ðµ Ð²Ð¾Ð·Ð´ÐµÐ¹ÑÑÐ²Ð¸Ðµ

description: Ð ÑÐ°Ð±Ð¾ÑÐµ Ð¿ÑÐ¾Ð²ÐµÐ´ÐµÐ½Ð¾ ÑÐºÑÐ¿ÐµÑÐ¸Ð¼ÐµÐ½ÑÐ°Ð»ÑÐ½Ð¾Ðµ Ð¸ÑÑÐ»ÐµÐ´Ð¾Ð²Ð°Ð½Ð¸Ðµ ÑÐ°ÑÐ°ÐºÑÐµÑÐ¸ÑÑÐ¸Ðº ÑÐ°Ð·ÑÑÑÐµÐ½Ð¸Ñ Ð¸ Ð¸Ð·Ð¼ÐµÐ»ÑÑÐµÐ½Ð¸Ñ ÐºÐ¾Ð¼Ð¿Ð¾Ð·Ð¸ÑÐ¸Ð¾Ð½Ð½ÑÑ Ð°Ð±ÑÐ°Ð·Ð¸Ð²Ð½ÑÑ Ð¼Ð°ÑÐµÑÐ¸Ð°Ð»Ð¾Ð² Ð½Ð° ÐºÐµÑÐ°Ð¼Ð¸ÑÐµÑÐºÐ¾Ð¹ Ð¾ÑÐ½Ð¾Ð²Ðµ Ð²ÑÑÐ¾ÐºÐ¾Ð²Ð¾Ð»ÑÑÐ½ÑÐ¼Ð¸ Ð¸Ð¼Ð¿ÑÐ»ÑÑÐ½ÑÐ¼Ð¸ ÑÐ°Ð·ÑÑÐ´Ð°Ð¼Ð¸ Ð² Ð¶Ð¸Ð´ÐºÐ¾Ð¹ Ð´Ð¸ÑÐ»ÐµÐºÑÑÐ¸ÑÐµÑÐºÐ¾Ð¹ ÑÑÐµÐ´Ðµ. ÐÑÑÐ»ÐµÐ´Ð¾Ð²Ð°Ð½Ñ Ð·Ð°Ð²Ð¸ÑÐ¸Ð¼Ð¾ÑÑÐ¸ Ð¿ÑÐ¾Ð±Ð¸Ð²Ð½ÑÑ Ð½Ð°Ð¿ÑÑÐ¶ÐµÐ½Ð¸Ð¹ Ð°Ð±ÑÐ°Ð·Ð¸Ð²Ð½ÑÑ Ð¼Ð°ÑÐµÑÐ¸Ð°Ð»Ð¾Ð² Ð¸Ð· ÑÐ°Ð·Ð»Ð¸ÑÐ½ÑÑ Ð²Ð¸Ð´Ð¾Ð² ÑÐ»ÐµÐºÑÑÐ¾ÐºÐ¾ÑÑÐ½Ð´Ð° Ð¾Ñ Ð²ÑÐµÐ¼ÐµÐ½Ð¸ Ð²Ð¾Ð·Ð´ÐµÐ¹ÑÑÐ²Ð¸Ñ Ð½Ð°Ð¿ÑÑÐ¶ÐµÐ½Ð¸Ñ. ÐÐ¿ÑÐµÐ´ÐµÐ»ÐµÐ½Ð° ÑÑÐµÐ¿ÐµÐ½Ñ Ð²Ð»Ð¸ÑÐ½Ð¸Ñ ÑÐ½ÐµÑÐ³ÐµÑÐ¸ÑÐµÑÐºÐ¸Ñ Ð¸ ÑÐµÑÐ½Ð¾Ð»Ð¾Ð³Ð¸ÑÐµÑÐºÐ¸Ñ ÑÐ°ÐºÑÐ¾ÑÐ¾Ð² Ð¿ÑÐ¾ÑÐµÑÑÐ° ÑÐ»ÐµÐºÑÑÐ¾Ð¸Ð¼Ð¿ÑÐ»ÑÑÐ½Ð¾Ð¹ Ð´ÐµÐ·Ð¸Ð½ÑÐµÐ³ÑÐ°ÑÐ¸Ð¸ Ð½Ð° ÑÑÑÐµÐºÑÐ¸Ð²Ð½Ð¾ÑÑÑ Ð¸ ÑÐµÐ»ÐµÐºÑÐ¸Ð²Ð½Ð¾ÑÑÑ ÑÐ°Ð·ÑÑÑÐµÐ½Ð¸Ñ Ð°Ð±ÑÐ°Ð·Ð¸Ð²Ð½ÑÑ Ð¼Ð°ÑÐµÑÐ¸Ð°Ð»Ð¾Ð². Ð Ð°Ð·ÑÐ°Ð±Ð¾ÑÐ°Ð½Ð¾ Ð¸ Ð¸ÑÐ¿ÑÑÐ°Ð½Ð¾ Ð¿ÑÐ¸Ð½ÑÐ¸Ð¿Ð¸Ð°Ð»ÑÐ½Ð¾ Ð½Ð¾Ð²Ð¾Ðµ ÑÑÐµÐ¼Ð½Ð¾Ðµ ÑÐµÑÐµÐ½Ð¸Ðµ ÐºÐ¾Ð¼Ð±Ð¸Ð½Ð¸ÑÐ¾Ð²Ð°Ð½Ð½Ð¾Ð³Ð¾ Ð²ÑÑÐ¾ÐºÐ¾Ð²Ð¾Ð»ÑÑÐ½Ð¾Ð³Ð¾ Ð³ÐµÐ½ÐµÑÐ°ÑÐ¾ÑÐ° Ñ Ð²Ð¾Ð·Ð¼Ð¾Ð¶Ð½Ð¾ÑÑÑÑ ÑÐ°ÑÐ¿ÑÐµÐ´ÐµÐ»ÐµÐ½Ð¸Ñ ÑÐ½ÐµÑÐ³Ð¾Ð²ÐºÐ»Ð°Ð´Ð° Ð½Ð° ÑÐ°Ð·Ð»Ð¸ÑÐ½ÑÑ ÑÑÐ°Ð´Ð¸ÑÑ ÑÐ»ÐµÐºÑÑÐ¾Ð¸Ð¼Ð¿ÑÐ»ÑÑÐ½Ð¾Ð³Ð¾ Ð²Ð¾Ð·Ð´ÐµÐ¹ÑÑÐ²Ð¸Ñ.
MOESM3 of Effect of helium pre- or postconditioning on signal transduction kinases in patients undergoing coronary artery bypass graft surgery
Creators: name: Smit, Kirsten
name: Brevoord, Daniel
name: Hert, Stefan
name: Mol, Bas
name: Kerindongo, Raphaela
name: Dieren, Susan
name: Schlack, Wolfgang
name: Hollmann, Markus
name: Weber, Nina
name: Preckel, Benedikt
Publisher: name: Figshare
Year: 2016
Subjects: Biochemistry
Medicine
Cell Biology
Molecular Biology
Developmental Biology
Marine Biology
Science Policy

description: Additional file 3. Technical problems using human atrial tissue for protein detection with western blot.
Laphystia canadensis Curran 1927
Creators: name: Lavigne, Robert J.
name: Dennis, D. Steve
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Asilidae
Laphystia
Laphystia canadensis

description: Laphystia canadensis Curran, 1927
Original Description: Laphystia canadensis Curran, 1927.
Published State Records: Cole (1969) (Wyoming); Fisher & Wilcox (1997) (Wyoming); Geller-Grimm (2016) (Wyoming); Martin & Wilcox (1965) (Wyoming); Wilcox (1960) (Wyoming)]. Published County Records: BH (one specimen identified by JKB). Museum Records: BH.
description: Published as part of Lavigne, Robert J. & Dennis, D. Steve, 2017, A checklist of the Robber Flies (Insecta: Diptera: Asilidae) of Wyoming, USA, pp. 335-365 in Zootaxa 4238 (3) on page 353, DOI: 10.11646/zootaxa.4238.3.2, http://zenodo.org/record/345779
Additional file 10: Figure S9. of Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle
Creators: name: Howard, Jeremy
name: Mekonnen Haile-Mariam
name: Pryce, Jennie
name: Maltecca, Christian
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified

description: Relationship between yield deviations that were corrected for the additive SNP effects estimated from the LASSO model and the residuals form the two stage analysis for protein yield and calving interval for the US population. (DOC 252 kb)
Additional file 1: Figure S1. of Imaging-genomics reveals driving pathways of MRI derived volumetric tumor phenotype features in Glioblastoma
Creators: name: Grossmann, Patrick
name: Gutman, David
name: Dunn, William
name: Holder, Chad
name: Aerts, Hugo
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer

description: Stratification power of volumetric tumor phenotype features. Kaplan-Meier analysis of the volumetric features that showed significant prognostic value (i.e., Necrosis, Contrast Enhancement, Tumor Bulk, and Total Tumor Volume). Except for Total Tumor Volume, these features also showed significant classification in low (blue) and high (red) risk groups based on the mean feature value. (PDF 111Â kb)
Additional file 2: Figure S2. of Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle
Creators: name: Howard, Jeremy
name: Mekonnen Haile-Mariam
name: Pryce, Jennie
name: Maltecca, Christian
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology

description: The significance1 across all traits for the Australia population based on Single Marker Regression Analysis. (DOC 572 kb)
Laphystia confusa Curran 1927
Creators: name: Lavigne, Robert J.
name: Dennis, D. Steve
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Asilidae
Laphystia
Laphystia confusa

description: Laphystia confusa Curran, 1927
Original Description: Laphystia confusa Curran, 1927.
Published State Records: Cole (1969) (Wyoming); Curran (1927) (paratype, male, Wyoming); Fisher & Wilcox (1997) (Wyoming); Geller-Grimm (2016) (Wyoming); Martin & Wilcox (1965) (Wyoming); Wilcox (1960) (Wyoming).
Published County Records: None known.
Museum Records: NI.
description: Published as part of Lavigne, Robert J. & Dennis, D. Steve, 2017, A checklist of the Robber Flies (Insecta: Diptera: Asilidae) of Wyoming, USA, pp. 335-365 in Zootaxa 4238 (3) on page 353, DOI: 10.11646/zootaxa.4238.3.2, http://zenodo.org/record/345779
Additional file 3: Table S1. of Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle
Creators: name: Howard, Jeremy
name: Mekonnen Haile-Mariam
name: Pryce, Jennie
name: Maltecca, Christian
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Plant Biology

description: Chromosomal locations and candidate genes associated with inbreeding depression for milk and fertility traits across countries. (DOC 45 kb)
Additional file 8: Figure S7. of Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle
Creators: name: Howard, Jeremy
name: Mekonnen Haile-Mariam
name: Pryce, Jennie
name: Maltecca, Christian
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Plot of additive genomic estimated breeding (GEBV) variance, covariance between the additive genomic estimated breeding (GEBV) and ROH4Mb based genomic estimated breeding value and ROH4Mb based genomic estimated breeding value variance across the genome for calving interval on the United States dataset. (DOC 449 kb)
Laphystia flavipes Coquillett 1904
Creators: name: Lavigne, Robert J.
name: Dennis, D. Steve
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Asilidae
Laphystia
Laphystia flavipes

description: Laphystia flavipes Coquillett, 1904
Original Description: Laphystia flavipes Coquillett, 1904. Published State Records: Cole (1969) (Wyoming); Geller-Grimm (2016) (Wyoming); Wilcox (1960) (Wyoming). Published County Records: None known.
Museum Records: None known.
description: Published as part of Lavigne, Robert J. & Dennis, D. Steve, 2017, A checklist of the Robber Flies (Insecta: Diptera: Asilidae) of Wyoming, USA, pp. 335-365 in Zootaxa 4238 (3) on page 353, DOI: 10.11646/zootaxa.4238.3.2, http://zenodo.org/record/345779
Additional file 4: Figure S3. of Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle
Creators: name: Howard, Jeremy
name: Mekonnen Haile-Mariam
name: Pryce, Jennie
name: Maltecca, Christian
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Plant Biology
subject: Computational Biology

description: Plot of additive genomic estimated breeding (GEBV) variance, covariance between the additive genomic estimated breeding (GEBV) and ROH4Mb based genomic estimated breeding value and ROH4Mb based genomic estimated breeding value variance across the genome for fat yield on the United States dataset. The region from 1.5 to 2.3 Mb on BTA14 were removed surrounding the DGAT mutation in order to make visualization more informative. (DOC 400 kb)
Additional file 5: Figure S4. of Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle
Creators: name: Howard, Jeremy
name: Mekonnen Haile-Mariam
name: Pryce, Jennie
name: Maltecca, Christian
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology
subject: Computational Biology

description: Plot of additive genomic estimated breeding (GEBV) variance, covariance between the additive genomic estimated breeding (GEBV) and ROH4Mb based genomic estimated breeding value and ROH4Mb based genomic estimated breeding value variance across the genome for fat yield on the Australian dataset. The region from 1.5 to 2.3 Mb on BTA14 were removed surrounding the DGAT mutation in order to make visualization more informative. (DOC 486 kb)
Additional file 1: Figure S1. of Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle
Creators: name: Howard, Jeremy
name: Mekonnen Haile-Mariam
name: Pryce, Jennie
name: Maltecca, Christian
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology

description: The significance1 across all traits for the United States population based on Single Marker Regression Analysis. (DOC 618 kb)
Additional file 6: Figure S5. of Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle
Creators: name: Howard, Jeremy
name: Mekonnen Haile-Mariam
name: Pryce, Jennie
name: Maltecca, Christian
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Plant Biology
subject: Computational Biology

description: Plot of additive genomic estimated breeding (GEBV) variance, covariance between the additive genomic estimated breeding (GEBV) and ROH4Mb based genomic estimated breeding value and ROH4Mb based genomic estimated breeding value variance across the genome for protein yield on the United States dataset. (DOC 419 kb)
Krylov and Modal Subspace based Model Order Reduction with A-Priori Error Estimation
Creators: name: Spescha, Daniel
name: Weikert, Sascha
name: Retka, Stefanie
name: Wegener, Konrad
Publisher: name: ETH Zurich
Year: 2018
Subjects: Dynamic system
Model order reduction (MOR)
Krylov subspace
Modal subspace
Component mode synthesis

description: Versatile model order reduction techniques for the reduction of dynamic systems have been presented in the last decades. Krylov subspace based methods are considered as efficient in terms of computational effort and reduction order and can be used in order to match the transfer function locally. However, they lack of a simple and efficient automatisation and error estimation. On the other hand, modal reduction is popular because it leads to exactly matching eigenfrequencies. The static behaviour and the overall accuracy of the frequency response, though, are poor. In this paper, a combination of both methods is presented and discussed.

In order to characterise a method for the reduction of mechanical models for the simulation of machine tools and similar mechatronic systems, first, the requirements on the model reduction method are derived. Criteria for the relative error of the frequency response function, the transmission zeros, and the poles are defined and the idea of defining a frequency range of interest is established.

Subsequently, a combination of Krylov and modal subspaces for the reduction of dynamic systems with second-order structure and proportional damping is presented. It is shown that the combination of the bases of the two methods leads to a combination of the advantages and an elimination of the drawbacks of them both. Moreover, an estimation for the upper bound of the defined error criteria is developed and verified with numerical results.

The result of this paper is an a priori parametrisable and numerically efficient model reduction method, which leads to reduced systems of low order with a definable error limit within a definable frequency range.
Additional file 1: of Survival rates of cancer patients with and without rheumatic disease: a retrospective cohort analysis
Creators: name: Park, Jin
name: Yang, Ji
name: Ahn, Eun
name: Chang, Sung
name: Song, Yeong
name: Curtis, Jeffrey
name: Lee, Eun
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Marine Biology
subject: Cancer

description: Supplementary material. Table S1. Interval between rheumatic disease and cancer diagnosis in years. Table S2. Cancer treatment according to rheumatic diseases. (DOCX 26Â kb)
Laphystia notata Bigot 1878
Creators: name: Lavigne, Robert J.
name: Dennis, D. Steve
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Asilidae
Laphystia
Laphystia notata

description: Laphystia notata (Bigot, 1878)
Original Description: Triclis notata Bigot, 1878. Published State Records: None known. Published County Records: None known. Museum Records: NI.
description: Published as part of Lavigne, Robert J. & Dennis, D. Steve, 2017, A checklist of the Robber Flies (Insecta: Diptera: Asilidae) of Wyoming, USA, pp. 335-365 in Zootaxa 4238 (3) on page 353, DOI: 10.11646/zootaxa.4238.3.2, http://zenodo.org/record/345779
Additional file 9: Figure S8. of Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle
Creators: name: Howard, Jeremy
name: Mekonnen Haile-Mariam
name: Pryce, Jennie
name: Maltecca, Christian
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Plot of additive genomic estimated breeding (GEBV) variance, covariance between the additive genomic estimated breeding (GEBV) and ROH4Mb based genomic estimated breeding value and ROH4Mb based genomic estimated breeding value variance across the genome for calving interval on the Australian dataset. (DOC 500 kb)
Additional file 1 of Sierra platinum: a fast and robust peak-caller for replicated ChIP-seq experiments with visual quality-control and -steering
Creators: name: MĂźller, Lydia
name: Gerighausen, Daniel
name: Farman, Mariam
name: Zeckzer, Dirk
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics

description: Supplementary information. The supplementary information (pdf file) contains a very detailed description of the method implemented in Sierra Platinum and a description of Sierra Platinum (user interface and infrastructure) and its optimization. Furthermore, we present a very comprehensive benchmark of Sierra Platinum, i.e., a comparison to other peak-callers and peak-calling approaches for replicated ChIP-seq experiments for various conditions and a parameter benchmark for the parameters of Sierra Platinum. We provide derived parameter settings and guidelines for choosing the right parameters based on the quality measurements implemented in Sierra Platinum. The supplementary information contains also a more extensive comparison between the result of Sierra Platinum and MACS-CR on real data. (PDF 3000 kb)
Travelling waves in somitogenesis: collective cellular properties emerge from time-delayed juxtacrine oscillation coupling
Creators: name: Tomka, Tomas
Publisher: name: ETH Zurich
Year: 2017

description: The sculpturing of the vertebrate body plan into segments begins with the sequential formation of somites in the presomitic mesoderm (PSM). The rhythmicity of this process is controlled by travelling waves of gene expression which sweep across the PSM. These kinetic waves emerge from coupled cellular oscillators and travel in the direction of an increasing gradient of oscillation period. The oscillations are driven by autorepression of HES/HER genes and are synchronized via Notch signalling. These emergent properties have been studied in various models of increasing complexity. We design a reduced mechanistic model of the zebrafish PSM oscillator that recapitulates oscillator entrainments and travelling wave formation in the presence of spatiotemporal time delay gradients. Our model shows that three key parameters, the autorepression delay, the juxtacrine coupling delay, and the coupling strength, are sufficient to understand the emergence of the collective period, the collective amplitude, and the synchronization of neighbouring HES/HER oscillators. Our theoretical framework allows us to integrate and dissect key collective properties emerging from coupled oscillators. These emergent properties are likely to represent a fundamental principle governing also other developmental processes such as neurogenesis and angiogenesis.
Additional file 3: of Caribou, water, and ice – fine-scale movements of a migratory arctic ungulate in the context of climate change
Creators: name: Leblond, Mathieu
name: Martin-Hugues St-Laurent
name: Côté, Steeve
Publisher: name: Figshare
Year: 2016
Subjects: subject: Molecular Biology
subject: Ecology
subject: FOS: Biological sciences
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Breakup and freeze dates of Lake Nichicun, Northern Québec, Canada, 1947–1985. (DOCX 40 kb)
Modelling of Moving Interfaces for Reduced-Order Finite Element Models using Trigonometric Interpolation
Creators: name: Spescha, Daniel
name: Weikert, Sascha
name: Wegener, Konrad
Publisher: name: ETH Zurich
Year: 2018
Subjects: Moving interfaces
Flexible multi-body simulation
Load distribution
Dynamic system
Finite element method

description: Flexible multi-body simulation by means of reduced-order finite element models is gathering in importance for the simulation of mechanical and mechatronic systems like, e.g.\ machine tools or handling systems. Moving of the system's axes involves changing of the coupling position between flexible bodies, and thus, changing of the finite element nodes involved in an interface. Because modern model reduction techniques are based on matching properties of the system's input-output behaviour, the order of the reduced model strongly depends on the number of interfaces used. Therefore, it is not appropriate to use all finite element nodes of a potential interface area as independent inputs. 
The subject of this paper is a method for modelling of moving interfaces to flexible bodies which is compatible with model order reduction.

First, a formalism is presented which allows the application of distributed loads onto the nodal degrees of freedom of finite element nodes.
Next, elementary load distributions which allow the application of forces and torques to a surface are introduced and, in a further step, orthonormalised in order to achieve stationary interfaces which provide the desired six degrees of freedom with an arbitrary center of action.
Subsequently, a method using trigonometric interpolation of a weighting function is presented which enables modelling of interfaces moving along a predefined path and acting on a known set of surfaces. 
As weighting function for geometrical restriction of the action on a surface, a trapezoidal function is suggested. As with the stationary interfaces, elementary load distributions for moving interfaces are presented and orthonormalised, what allows modelling of moving interfaces with six degrees of freedom.

The resulting nodal degrees of freedom are visualised by means of examples and analysed for different meshes. 
For appropriate finite element meshes, the maximum relative error of action lies below $10^{-5}$ and the maximum cross-coupling between the interface's degrees of freedom lies below $10^{-3}$ for the majority of the moving path length. Due to the trigonometric interpolation approach, only a low number of harmonics are to be used as interface matrices for the finite element system what qualifies the method for the use in combination with model order reduction.
Laphystia rubra Hull 1957
Creators: name: Lavigne, Robert J.
name: Dennis, D. Steve
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Asilidae
Laphystia
Laphystia rubra

description: Laphystia rubra Hull, 1957
Original Description: Laphystia rubra Hull, 1957. Published State Records: None known. Published County Records: None known. Museum Records: SW.
description: Published as part of Lavigne, Robert J. & Dennis, D. Steve, 2017, A checklist of the Robber Flies (Insecta: Diptera: Asilidae) of Wyoming, USA, pp. 335-365 in Zootaxa 4238 (3) on page 353, DOI: 10.11646/zootaxa.4238.3.2, http://zenodo.org/record/345779
Additional file 2: of Caribou, water, and ice – fine-scale movements of a migratory arctic ungulate in the context of climate change
Creators: name: Leblond, Mathieu
name: Martin-Hugues St-Laurent
name: Côté, Steeve
Publisher: name: Figshare
Year: 2016
Subjects: subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Largest water bodies used by migratory caribou of the Rivière-aux-Feuilles herd between 2007 and 2014. (DOCX 15 kb)
Additional file 1: of Caribou, water, and ice – fine-scale movements of a migratory arctic ungulate in the context of climate change
Creators: name: Leblond, Mathieu
name: Martin-Hugues St-Laurent
name: Côté, Steeve
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: GPS telemetry program on migratory caribou of the Rivière-aux-Feuilles herd between 2007 and 2014 in Northern Québec, Canada. (DOCX 14 kb)
Additional file 4: of Caribou, water, and ice – fine-scale movements of a migratory arctic ungulate in the context of climate change
Creators: name: Leblond, Mathieu
name: Martin-Hugues St-Laurent
name: Côté, Steeve
Publisher: name: Figshare
Year: 2016
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Relationships between the annual breakup and freeze dates of the largest water bodies used by the Rivière-aux-Feuilles caribou and Lake Nichicun in Northern Québec, Canada, and monthly values of the North Atlantic and Arctic Oscillations. (DOCX 28 kb)
Additional file 3: Table S3. of Lost in translation: a case-study of the travel of lean thinking in a hospital
Creators: name: Andersen, Hege
name: RĂ¸Vik, Kjell
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Computational Biology

description: Reviewed and local enablers identified by the focus groups. (DOCX 13 kb)
Additional file 4: Tables S4-S7. of Lost in translation: a case-study of the travel of lean thinking in a hospital
Creators: name: Andersen, Hege
name: RĂ¸Vik, Kjell
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Computational Biology

description: The three most preferred enablers by management, consultants and staff in focus groups, percent per part of the intervention. (DOCX 13 kb)
Additional file 1: Table S1. of Lost in translation: a case-study of the travel of lean thinking in a hospital
Creators: name: Andersen, Hege
name: RĂ¸Vik, Kjell
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 60506 Virology
subject: Computational Biology

description: Study sample and data collection method. (DOCX 10 kb)
Additional file 2: Table S2. of Lost in translation: a case-study of the travel of lean thinking in a hospital
Creators: name: Andersen, Hege
name: RĂ¸Vik, Kjell
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Marine Biology
subject: Computational Biology

description: The local enablers. (DOCX 12 kb)
Additional file 3 of The role of HIF-1 in oncostatin M-dependent metabolic reprogramming of hepatic cells
Creators: name: Battello, Nadia
name: Zimmer, Andreas
name: Goebel, Carole
name: Xiangyi Dong
name: Behrmann, Iris
name: Haan, Claude
name: Hiller, Karsten
name: Wegner, Andre
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology

description: Figure S2. (A) Glucose uptake and lactate secretion rates in PH5CH8 immortalized hepatocytes in response to a 36 h treatment with 50 ng/mL OSM. Uptake and secretion rates were determined by GC/MS. (B) Îą-ketoglutarate to citrate ratios in PH5CH8 cells treated with 50ng/mL of OSM for 36 h in comparison to the respective untreated control. (PDF 42.2 kb)
Laphystia rufiventris Curran 1931
Creators: name: Lavigne, Robert J.
name: Dennis, D. Steve
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Asilidae
Laphystia
Laphystia rufiventris

description: Laphystia rufiventris Curran, 1931
Original Description: Laphystia rufiventris Curran, 1931.
Published State Records: Cole (1969) (Wyoming); Curran (1931); Fisher & Wilcox (1997) (Wyoming); Geller- Grimm (2016) (Wyoming); Martin & Wilcox (1965) (Wyoming); Wilcox (1960). Published County Records: SW.
Museum Records: HS; SW; UI.
description: Published as part of Lavigne, Robert J. & Dennis, D. Steve, 2017, A checklist of the Robber Flies (Insecta: Diptera: Asilidae) of Wyoming, USA, pp. 335-365 in Zootaxa 4238 (3) on page 353, DOI: 10.11646/zootaxa.4238.3.2, http://zenodo.org/record/345779
Additional file 2 of The role of HIF-1 in oncostatin M-dependent metabolic reprogramming of hepatic cells
Creators: name: Battello, Nadia
name: Zimmer, Andreas
name: Goebel, Carole
name: Xiangyi Dong
name: Behrmann, Iris
name: Haan, Claude
name: Hiller, Karsten
name: Wegner, Andre
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Figure S1. Effects of OSM and hypoxia on HIF-1 α and HIF-2 α protein expression in hepatoma cells and hepatocytes. Eleven hepatoma cell lines and two immortalized hepatocyte cell lines (PH5CH8 and THLE-2) were treated with 20 ng/ml OSM (O) or grown at 1 % O2 (H) over 8 and 36 h. (A) HIF-1 α protein expression after OSM treatment represented in comparison to untreated cells (Ut). (B) HIF-1 α protein expression after OSM treatment represented in comparison to cells grown under hypoxia. (C) HIF-2 α protein expression after OSM treatment represented in comparison to untreated cells. (D) HIF-2 α protein expression after OSM treatment represented in comparison to cells grown under hypoxia. (E) HIF-1 α and HIF-2 α protein induction in non-neoplastic THLE-2 hepatocytes after OSM or hypoxia or a combinatorial treatment. (PDF 655 kb)
Additional file 6 of The role of HIF-1 in oncostatin M-dependent metabolic reprogramming of hepatic cells
Creators: name: Battello, Nadia
name: Zimmer, Andreas
name: Goebel, Carole
name: Xiangyi Dong
name: Behrmann, Iris
name: Haan, Claude
name: Hiller, Karsten
name: Wegner, Andre
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Cancer

description: Figure S3. Response of PH5CH1 and PH5CH7 non-neoplastic hepatocytes to OSM, hypoxia, and a combination of both stimuli. PH5CH1 and PH5CH7 cells were treated with OSM (50 ng/ml), hypoxia (1 % O2), or a combinatorial treatment for the indicated periods of time. (A, D) Quantitative RT-PCR of PDP2, PDK1, and HIF-1 α mRNA. Fold changes were calculated relative to the untreated control. (B, E) Western blot analysis for HIF-1 α, HIF-2 α, PDK1, and all three PDH phosphorylation sites (S232, S293, S300). Vinculin and α-tubulin were used as loading controls, and one representative blot is shown. (C, F) Quantification of PDK1 protein levels. (PDF 428 kb)
Additional file 5 of The role of HIF-1 in oncostatin M-dependent metabolic reprogramming of hepatic cells
Creators: name: Battello, Nadia
name: Zimmer, Andreas
name: Goebel, Carole
name: Xiangyi Dong
name: Behrmann, Iris
name: Haan, Claude
name: Hiller, Karsten
name: Wegner, Andre
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Developmental Biology
subject: Cancer

description: Table S3. Mass isotopomer distributions (MIDs) from [13C5]glutamine in PH5CH8 immortalized human hepatocytes treated for 36 h with 50 ng/mL OSM or left untreated. MIDs were corrected for natural isotope abundance. (PDF 94.2 kb)