cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Uniqueness of Galilean Conformal Electrodynamics and its Dynamical Structure
Creators: name: Banerjee, Kinjal
name: Basu, Rudranil
name: Mohan, Akhila
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: We investigate the existence of action for both the electric and magnetic sectors of Galilean Electrodynamics using Helmholtz conditions. We prove the existence of unique action in magnetic limit with the addition of a scalar field in the system. The check also implies the non existence of action in the electric sector of Galilean electrodynamics. Dirac constraint analysis of the theory reveals that there are no local degrees of freedom in the system. Further, the theory enjoys a reduced but an infinite dimensional subalgebra of Galilean conformal symmetry algebra as global symmetries. The full Galilean conformal algebra however is realized as canonical symmetries on the phase space. The corresponding algebra of Hamilton functions acquire a state dependent central charge.
description: 27 pages, no figures
Galaxy Clustering and Galaxy Bias in a Lambda-CDM Universe
Creators: name: Weinberg, David H.
name: Dav'e, Romeel
name: Katz, Neal
name: Hernquist, Lars
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We investigate galaxy clustering and galaxy-mass correlations in the LCDM cosmological model using a large volume SPH simulation. For the most part, the predicted biases between galaxies and dark matter lead to good agreement with current observations, including: (1) a nearly constant comoving correlation length from z=3 to z=0 for mass-selected galaxy samples of constant comoving space density; (2) an rms bias factor b~1 at z=0; (3) a scale-dependent bias on small scales that transforms the curved dark matter correlation function into a nearly power-law galaxy correlation function; (4) galaxy pairwise dispersion and hierarchical skewness ratio S_3 in good agreement with observed values, and lower than values for the dark matter by ~20%; (5) a ratio of galaxy-galaxy to galaxy-mass correlation functions consistent with recent measurements from the RCS survey; and (6) a mean excess mass dM(260/h kpc) approximately proportional to galaxy baryon mass M_b, in agreement with lensing estimates from the SDSS. These clustering properties vary with galaxy baryon mass and, more strongly, with stellar population age, in good qualitative agreement with the observed dependence of galaxy clustering and galaxy-mass correlations on galaxy type. The predicted ratio dM(260)/M_b is lower than the SDSS estimates for galaxies with M_b>~2e11 Msun, but numerical resolution effects account for most of this discrepancy, leaving little room for feedback or other astrophysical processes to reduce the stellar masses of luminous galaxies, at least given our adopted cosmological parameters. Our results show that the LCDM model and the galaxy formation physics incorporated in the SPH simulation give a good account of observed galaxy clustering, but anticipated improvements in clustering and weak lensing measurements will soon test this picture in much more detail.
description: Submitted to ApJ, 49 pages, 14 figures, version with full resolution Figs 1 and 3 at http://www.astronomy.ohio-state.edu/~dhw/Preprints/gcbias.ps.gz
Actaeomorpha punctata Edmondson 1935
Creators: name: Castro, Peter
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Aethridae
Actaeomorpha
Actaeomorpha punctata

description: Actaeomorpha punctata Edmondson, 1935
 Actaeomorpha punctata Edmondson, 1935: 20, fig. 5, pl. 1, fig. A [type locality: O‘ahu, also from Kure Atoll; holotype: BPBM S3738].
 Remarks. Described from the Hawaiian Is. but no subsequent records are known from the archipelago.
 Taxonomy. Edmondson (1935)
 Geographical distribution. Hawaiian and Line islands.
 Habitat. Shallow subtidal.
description: Published as part of Castro, Peter, 2011, Catalog of the anomuran and brachyuran crabs (Crustacea: Decapoda: Anomura, Brachyura) of the Hawaiian Islands 2947, pp. 1-154 in Zootaxa 2947 (1) on page 38, DOI: 10.11646/zootaxa.2947.1.1, http://zenodo.org/record/5283044
Embedding Orthogonal Memories in a Colloidal Gel through Oscillatory Shear
Creators: name: Schwen, Eric M
name: Ramaswamy, Meera
name: Cheng, Chieh-Min
name: Jan, Linda
name: Cohen, Itai
Publisher: name: arXiv
Year: 2019
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: It has recently been shown that in a broad class of disordered systems oscillatory shear training can embed memories of specific shear protocols in relevant physical parameters such as the yield strain. These shear protocols can be used to change the physical properties of the system and memories of the protocol can later be "read" out. Here we investigate shear training memories in colloidal gels, which include an attractive interaction and network structure, and discover that such systems can support memories both along and orthogonal to the training flow direction. We use oscillatory shear protocols to set and read out the yield strain memories and confocal microscopy to analyze the rearranging gel structure throughout the shear training. We find that the gel bonds remain largely isotropic in the shear-vorticity plane throughout the training suggesting that structures formed to support shear along the training shear plane are also able to support shear along the orthogonal plane. Orthogonal memory extends the usefulness of shear memories to more applications and should apply to many other disordered systems as well.
description: Converted to TeX, fixed typos and reference formatting, higher quality images, included SI file
BUSINESS SUMMARY NEW YORK STATE 2002
Creators: name: Knoblauch, Wayne A.
name: Putnam, Linda D.
name: Karszes, Jason
name: Knoblauch, Wayne A.
name: Putnam, Linda D.
name: Karszes, Jason
Publisher: name: Unknown
Year: 2003
Subjects: subject: Livestock Production/Industries
subject: BUSINESS ANALYSIS
subject: DAIRY MANAGEMENT
subject: FARM BUSINESS SUMMARY
subject: NEW YORK FARMS

description: Business and financial records for 2002 from 219 New York dairy farm businesses are summarized and analyzed. This analysis demonstrates the use of cash accounting with accrual adjustments to measure farm profitability, financial performance, and costs of producing milk. Traditional methods of analyzing dairy farm businesses are combined with evaluation techniques that show the relationship between good management performance and financial success. The farms in the project averaged 297 cows per farm and 22,312 pounds of milk sold per cow, which represent above average size and management level for New York dairy farms. Net farm income excluding appreciation, which is the return to the operator's labor, management, capital, and other unpaid family labor, averaged $38,185 per farm. The rate of return to all capital invested in the farm business including appreciation averaged 2.9 percent. Differences in profitability between farms continue to widen. Average net farm income excluding appreciation of the top 10 percent of farms was $311,300, while the lowest 10 percent was a negative $173,275. Rates of return on equity with appreciation ranged from 64 percent to negative 37 percent for the highest 10 percent and the lowest 10 percent of farms, respectively. In 2002, farms supplementing the herd with bovine somatotropin (bST) attained higher rates of milk production per cow, had larger herds and were more profitable than farms not supplementing with bST for all measures other than labor and management income per operator. Farms adopting rotational grazing generally produced less milk per cow than non-grazing farms but had somewhat lower costs of production and higher profitability. Large freestall farms averaged the highest milk output per cow and per worker, the lowest total cost of production and investment per cow, and the greatest returns to labor, management and capital. Farms milking three times a day (3X) were larger, produced more milk per cow and had higher net incomes than herds milking two times per day (2X). Operating costs per hundredweight of milk were $0.22 per hundredweight higher for 3X than 2X milking herds, while output per cow was 3,768 pounds higher. One should not conclude that adoption of these technologies alone were responsible for differences in performance.
Additional file 1 of TRIM3 inhibits P53 signaling in breast cancer cells
Creators: name: Wang, Xinxing
name: Zhang, Yujie
name: Pei, Xinhong
name: Guo, Guangcheng
name: Xue, Bingjian
name: Duan, Xin
name: Dou, Dongwei
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Space Science
subject: Cell Biology
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Hematology
subject: Plant Biology
subject: FOS: Biological sciences

description: Additional file 1. Supplementary Figures.
The Broad-band Optical Properties of Galaxies with Redshifts 0.0 < z < 0.2
Creators: name: Blanton, M. R.
name: Hogg, D. W.
name: Bahcall, N. A.
name: Baldry, I. K.
name: Brinkmann, J.
name: Csabai, I.
name: Eisenstein, D. J.
name: Fukugita, M.
name: Gunn, J. E.
name: Ivezic, Z.
name: Lamb, D. Q.
name: Lupton, R. H.
name: Loveday, J.
name: Munn, J. A.
name: Nichol, R. C.
name: Okamura, S.
name: Schlegel, D. J.
name: Shimasaku, K.
name: Strauss, M. A.
name: Vogeley, M. S.
name: Weinberg, D. H.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Using photometry and spectroscopy of 144,609 galaxies from the Sloan Digital Sky Survey, we present bivariate distributions of pairs of seven galaxy properties: four optical colors, surface brightness, radial profile shape as measured by the Sersic index, and absolute magnitude. In addition, we present the dependence of local galaxy density (smoothed on 8 h^{-1} Mpc scales) on all of these properties. Several classic, well-known relations among galaxy properties are evident at extremely high signal-to-noise ratio: the color-color relations of galaxies, the color-magnitude relations, the magnitude-surface brightness relation, and the dependence of density on color and absolute magnitude. We show that most of the i-band luminosity density in the universe is in the absolute magnitude and surface brightness ranges used. Some of the relationships between parameters, in particular the color--magnitude relations, show stronger correlations for exponential galaxies and concentrated galaxies taken separately than for all galaxies taken together. We provide a simple set of fits of the dependence of galaxy properties on luminosity for these two sets of galaxies.
description: 36 pages, including 14 figures, 1 table, submitted to ApJ
Efficiency of Scale-Free Networks: Error and Attack Tolerance
Creators: name: Crucitti, Paolo
name: Latora, Vito
name: Marchiori, Massimo
name: Rapisarda, Andrea
Publisher: name: arXiv
Year: 2002
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: The concept of network efficiency, recently proposed to characterize the properties of small-world networks, is here used to study the effects of errors and attacks on scale-free networks. Two different kinds of scale-free networks, i.e. networks with power law P(k), are considered: 1) scale-free networks with no local clustering produced by the Barabasi-Albert model and 2) scale-free networks with high clustering properties as in the model by Klemm and Eguiluz, and their properties are compared to the properties of random graphs (exponential graphs). By using as mathematical measures the global and the local efficiency we investigate the effects of errors and attacks both on the global and the local properties of the network. We show that the global efficiency is a better measure than the characteristic path length to describe the response of complex networks to external factors. We find that, at variance with random graphs, scale-free networks display, both on a global and on a local scale, a high degree of error tolerance and an extreme vulnerability to attacks. In fact, the global and the local efficiency are unaffected by the failure of some randomly chosen nodes, though they are extremely sensititive to the removal of the few nodes which play a crucial role in maintaining the network's connectivity.
description: 23 pages, 10 figures
Sustainable genomic research for food security in sub-Saharan Africa
Creators: name: Aryee, Sethlina Naa Dodua
name: Owusu-Adjei, Dennis
name: Osei-Amponsah, Richard
name: Skinner, Benjamin
name: Sowatey, Emmanuel
name: Sargent, Carole Anne
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Review
Agricultural biodiversity
Genetic resources
Collaborations
Capacity-building
Policy

description: Abstract: Although traditional selective breeding has had a tremendous impact on both livestock and crop production in Africa, this has not kept pace with the high demand for animal and plant products on account of increasing urbanization, improved livelihoods and a rapidly growing human population. These challenges justify the need for more innovative and sustainable ways of improving animal and crop production to meet this demand. Over the last two decades the potential of genomics as a key tool to achieve improvement in desirable phenotypic traits has revolutionized the field of applied animal and plant biology. However, well informed use of such techniques has yet to be fully exploited within the context of local resources and capacity-building. The objective of this review is to highlight the rich agricultural biodiversity of sub-Saharan Africa, the potential of genomics in their sustainable use for food security, the challenges of genomic research and the strategies that can be adopted to overcome them in the implementation of agricultural genomic research in Africa. The lack of state-of-the-art laboratory research facilities, skilled human resources, poor funding and non-availability of scientific research resources, paucity of collaborative links between African researchers and a lack of engagement between key stakeholders in the agricultural value chain were identified as major barriers that affect agricultural genomic research in Africa. Finally, the recommended strategies to overcome these challenges will guide policy-makers, researchers, development partners and key stakeholders in the smooth advancement of sustainable agricultural genomic research for improved food security in Africa.
Price and Quality Effects of Generic Advertising: The Case of Norwegian Salmon
Creators: name: Myrland, Oystein
name: Dong, Diansheng
name: Kaiser, Harry M.
name: Myrland, Oystein
name: Dong, Diansheng
name: Kaiser, Harry M.
Publisher: name: Unknown
Year: 2003
Subjects: subject: Marketing
subject: FOS: Economics and business

description: In this paper, a two-equation sample selection model is used to estimate a household demand function for salmon incorporating domestic generic advertising. The twoequation estimation procedure, based on purchase and unit value equations, allows us to handle heavily censored panel data for salmon purchases by Norwegian households and the quality effects simultaneously. Unit values of the aggregated salmon commodity calculated from the observed expenditures and quantities are hypothesized to represent the average quality of the purchased commodity. Advertising effects on both purchases and unit values are investigated. The model also allows us to separate the effects of conditional purchases and purchase probabilities. Results indicate that most (78%) of the advertising effect is through the change of non-purchase occasions to purchase occasions, and that generic salmon advertising induces Norwegian households to spend more money on salmon. However, advertising causes households to select more expensive products rather than increasing their purchased quantities.
The art of getting lost how re-discovering your city can be an antidote to capitalism
Creators: name: Dobson, Stephen
Publisher: name: CQUniversity
Year: 2025
Subjects: classificationCode: 441001
subject: Applied sociology, program evaluation and social impact assessment

description: Do you remember what it was like to discover the magic of a city for the first time? Do you remember the noises, smells, flashing lights and pulsating crowds? Or do you mostly remember cities through the screen of your phone?
Additional file 2: of Accelerated aortic 4D flow cardiovascular magnetic resonance using compressed sensing: applicability, validation and clinical integration
Creators: name: Neuhaus, Elisabeth
name: Weiss, Kilian
name: Bastkowski, Rene
name: Koopmann, Jonas
name: Maintz, David
name: Giese, Daniel
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Hematology
subject: 60506 Virology

description: Bland-Altman analysis of scan-rescan agreement. Bland-Altman plots comparing (a) net flows, (b) peak flows and (c) peak velocities of in each case two repeated measurements of S2, CS6 and CS8 accelerated scans. The mean differences, standard deviations and their confidence intervals (red shaded areas) were calculated from the data points of all contours. (PDF 414 kb)
Direct Wide-Field Radio Imaging in Real-Time at High Time Resolution using Antenna Electric Fields
Creators: name: Kent, James
name: Beardsley, Adam P.
name: Bester, Landman
name: Gull, Steve F.
name: Nikolic, Bojan
name: Dowell, Jayce
name: Thyagarajan, Nithyanandan
name: Taylor, Greg B.
name: Bowman, Judd
Publisher: name: arXiv
Year: 2019
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: The recent demonstration of a real-time direct imaging radio interferometry correlator represents a new capability in radio astronomy. However wide field imaging with this method is challenging since wide-field effects and array non-coplanarity degrade image quality if not compensated for. Here we present an alternative direct imaging correlation strategy using a Direct Fourier Transform (DFT), modelled as a linear operator facilitating a matrix multiplication between the DFT matrix and a vector of the electric fields from each antenna. This offers perfect correction for wide field and non-coplanarity effects. When implemented with data from the Long Wavelength Array (LWA), it offers comparable computational performance to previously demonstrated direct imaging techniques, despite having a theoretically higher floating point cost. It also has additional benefits, such as imaging sparse arrays and control over which sky co-ordinates are imaged, allowing variable pixel placement across an image. It is in practice a highly flexible and efficient method of direct radio imaging when implemented on suitable arrays. A functioning Electric Field Direct imaging architecture using the DFT is presented, alongside an exploration of techniques for wide-field imaging similar to those in visibility based imaging, and an explanation of why they do not fit well to imaging directly with the digitized electric field data. The DFT imaging method is demonstrated on real data from the LWA telescope, alongside a detailed performance analysis, as well as an exploration of its applicability to other arrays.
description: 12 pages, 8 figures, 2 tables. Accepted for publication in Monthly Notices of the Royal Astronomical Society
Aethra edentata Edmondson 1951
Creators: name: Castro, Peter
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Aethridae
Aethra
Aethra edentata

description: Aethra edentata Edmondson, 1951
 Aethra edentata Edmondson, 1951: 214, figs. 19, 20 [type locality: O‘ahu; holotype: BPBM S5561 a].
 Additional Hawaiian Is. records:
 Aethra edentata Edmondson, 1951 — Ng 1999: 114, figs. 3–5 [O‘ahu]. — Hoover 2006: 271, color photograph [O‘ahu].
 Taxonomy. Ng (1999)
 Geographical distribution. Western Pacific Ocean, French Polynesia, Hawaiian Is.
 Habitat. Shallow subtidal to 106 m.
description: Published as part of Castro, Peter, 2011, Catalog of the anomuran and brachyuran crabs (Crustacea: Decapoda: Anomura, Brachyura) of the Hawaiian Islands 2947, pp. 1-154 in Zootaxa 2947 (1) on page 38, DOI: 10.11646/zootaxa.2947.1.1, http://zenodo.org/record/5283044
Estimation of a Censored AIDS Model: A Simulated Amemiya-Tobin Approach
Creators: name: Dong, Diansheng
name: Kaiser, Harry M.
name: Dong, Diansheng
name: Kaiser, Harry M.
Publisher: name: Unknown
Year: 2003
Subjects: subject: Demand and Price Analysis
subject: Research Methods/ Statistical Methods
subject: Amemiya-Tobin
subject: censored demand system
subject: AIDS model
subject: probability simulation
subject: Canadian household food demand

description: Kuhn-Tucker approach and its dual have been proposed to the demand system estimation when there are non-negativity bindings. However, empirical researchers have been struggling two decades in applying this method into practice due to: (1) the difficulty in derivation of a coherent econometric model, and (2) the cumbersome evaluation of high order probability integrals needed in parameter estimation. In this paper, we avoid the above two issues by using the Amemiya-Tobin demand system approach and the simulation procedure to evaluate the probability integrals. An AIDS model is estimated and the elasticities are obtained that are impossible to achieve when using Kuhn-Tucker approach. The model is applied to an analysis of Canadian household food demand.
title: ASSESSING FREEWAY CRASH RISK USING CROWDSOURCED WAZE INCIDENT ALERTS
Creators: name: Antwi Boasiako, Eugene
Publisher: name: University of Kentucky Libraries
Year: 2021
Subjects: subject: FOS: Civil engineering

description: Traffic data obtained through crowdsourcing are becoming more accessible to traffic agencies due to advancements in smartphone technology. Traffic managers aim to use this data to complement their conventional sources of data and provide additional context in their analysis. In this study, Waze incident alerts are integrated with GPS-Probe speed data and Kentucky State Police (KSP) crashes to assess their impact on traffic flow and safety on freeways in Kentucky. The analysis showed that the presence of a vehicle on the shoulder is associated with about 36.7% of freeway crashes in Kentucky. The presence of a vehicle on the shoulder coupled with congestion were 11.7% of the crashes. As such, the correlation between vehicle on shoulder, congestion and crashes was significant. Albeit present within the vicinity of 7.4% of crashes, the presence of a vehicle in the travel lane did not show as having a significant correlation with crashes. Linking Waze crash alerts with crashes and assessing their spatiotemporal patterns, it is found that Waze crashes are spatially accurate and hence could be used as an alternate source for identifying crashes, sometimes earlier, in Kentucky and hence cutting down incident response and clearance times. The data used in this study and the analytical methods employed offer much needed insight into the potential of crowdsourced traffic incident data for traffic monitoring to ensure safety.
description: © 2021 Eugene Boasiako Antwi
Scattering Cross Sections and Lorentz Violation
Creators: name: Colladay, Don
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: To date, a significant effort has been made to adddress the Lorentz violating standard model in low-energy systems, but little is known about the ramifications for high-energy cross sections. In this talk, I discuss the modified Feynman rules that result when Lorentz violation is present and give the results of an explicit calculation for electron-positron annihilation into two photons.
description: 9 pages, 1 figure, talk presented at the second meeting on CPT and Lorentz Symmetry, Bloomington, Indiana, August 2001
A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns
Creators: name: Jiao, Wei
name: Karlic, Rosa
name: Cuppen, Edwin
name: Danyi, Alexandra
name: De Ridder, Jeroen
name: Van Herpen, Carla
name: Lolkema, Martijn P.
name: Steeghs, Neeltje
name: Morris, Quaid
name: Al-Shahrour, Fatima
name: Atwal, Gurnit
name: Bailey, Peter J.
name: Biankin, Andrew V.
name: Boutros, Paul C.
name: Campbell, Peter J.
name: Chang, David K.
name: Cooke, Susanna L.
name: Deshpande, Vikram
name: Faltas, Bishoy M.
name: Faquin, William C.
name: Garraway, Levi
name: Getz, Gad
name: Grimmond, Sean M.
name: Haider, Syed
name: Hoadley, Katherine A.
name: Kaiser, Vera B.
name: Karlić, Rosa
name: Kato, Mamoru
name: Kübler, Kirsten
name: Lazar, Alexander J.
name: Li, Constance H.
name: Louis, David N.
name: Margolin, Adam
name: Martin, Sancha
name: Nahal-Bose, Hardeep K.
name: Nielsen, G. Petur
name: Nik-Zainal, Serena
name: Omberg, Larsson
name: P’ng, Christine
name: Perry, Marc D.
name: Polak, Paz
name: Rheinbay, Esther
name: Rubin, Mark A.
name: Semple, Colin A.
name: Sgroi, Dennis C.
name: Shibata, Tatsuhiro
name: Siebert, Reiner
name: Smith, Jaclyn
name: Stein, Lincoln D.
name: Stobbe, Miranda D.
name: Sun, Ren X.
name: Thai, Kevin
name: Wright, Derek W.
name: Wu, Chin-Lee
name: Yuan, Ke
name: Zhang, Junjun
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article
/631/208/69
/692/699/67/1680
/45
/45/23
/139
/119
article

description: Abstract: In cancer, the primary tumour’s organ of origin and histopathology are the strongest determinants of its clinical behaviour, but in 3% of cases a patient presents with a metastatic tumour and no obvious primary. Here,as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, we train a deep learning classifier to predict cancer type based on patterns of somatic passenger mutations detected in whole genome sequencing (WGS) of 2606 tumours representing 24 common cancer types produced by the PCAWG Consortium. Our classifier achieves an accuracy of 91% on held-out tumor samples and 88% and 83% respectively on independent primary and metastatic samples, roughly double the accuracy of trained pathologists when presented with a metastatic tumour without knowledge of the primary. Surprisingly, adding information on driver mutations reduced accuracy. Our results have clinical applicability, underscore how patterns of somatic passenger mutations encode the state of the cell of origin, and can inform future strategies to detect the source of circulating tumour DNA.
Calappa calappa calappa (Linnaeus 1758
Creators: name: Castro, Peter
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Calappidae
Calappa
Calappa calappa

description: Calappa calappa (Linnaeus, 1758)
 Cancer calappa Linnaeus, 1758: 630 [type locality: Asia; type material: status and location unknown].
 Hawaiian Is. records:
 Calappa calappa (Linnaeus, 1758) — Rathbun 1906: 887 [O‘ahu, Hawai‘i]. — Edmondson 1946: 271 [H.I.]. — Tinker 1965: 70, pl. 23 [H.I.]. — Titcomb et al. 1979: 370 [H.I.]. — Galil 1997: 279, figs. 1b, 3, 4b, 29 [O‘ahu]. — Hoover 2006: 267, color photograph [O‘ahu].
 Taxonomy. Galil (1997)
 Geographical distribution. Across Indo-West Pacific region.
 Habitat. Buries in sand; intertidal, shallow subtidal to 55 m.
description: Published as part of Castro, Peter, 2011, Catalog of the anomuran and brachyuran crabs (Crustacea: Decapoda: Anomura, Brachyura) of the Hawaiian Islands 2947, pp. 1-154 in Zootaxa 2947 (1) on page 39, DOI: 10.11646/zootaxa.2947.1.1, http://zenodo.org/record/5283044
Proximity Effect and Multiple Andreev Reflections in Chaotic Josephson junctions
Creators: name: Samuelsson, P.
name: Johansson, G.
name: Ingerman, Å.
name: Shumeiko, V. S.
name: Wendin, G.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We study the dc-current transport in a voltage biased superconductor-chaotic dot-superconductor junction with an induced proximity effect(PE) in the dot. It is found that for a Thouless energy $E_{Th}$ of the dot smaller than the superconducting energy gap $Δ$, the PE is manifested as peaks in the differential conductance at voltages of order $E_{Th}$ away from the even subharmonic gap structures $eV \approx 2(Δ\pm E_{Th})/2n$. These peaks are insensitive to temperatures $kT \ll Δ$ but are suppressed by a weak magnetic field. The current for suppressed PE is independent of $E_{Th}$ and magnetic field and is shown to be given by the Octavio-Tinkham-Blonder-Klapwijk theory.
description: 4 pages, 3 figures
Potential anti-inflammation nor-oleanane triterpenoids from the fruits of Stauntonia brachyanthera
Creators: name: Yang, Wei
name: Chen, Mei
name: Meng, Dali
name: Wei, Peifeng
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Pharmacology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified

description: The studies on Stauntonia brachyanthera led to the isolations of 7 normal and nor-oleanane triterpenoids, including 2 new ones. Compounds 1 and 3 showed moderate inhibitory activity on lipopolysaccharide (LPS)-induced nitric oxide production in RAW 264.7 macrophages with the IC50 values of 16.09 and 20.19 μM, respectively, which were stronger than that of positive control. A primary structure-activity relationship was also discussed, which revealed the anti-inflammation abilities of three types triterpenoids and their potential possibilities as the candidate compounds for the treatment of inflammation.
Calappa gallus
Creators: name: Castro, Peter
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Calappidae
Calappa
Calappa gallus

description: Calappa gallus (Herbst, 1803)
 Cancer gallus Herbst, 1803: 46, pl. 58, fig. 1 [color] [type locality: Ostindien; holotype: ZMB Herbst 2169].
 Hawaiian Is. records:
 Calappa gallus (Herbst, 1803) — Dana 1852b: 393 [Maui]. — Rathbun 1906: 887 [Kaua‘i, Moloka‘i, Hawai‘i, “Modu Manu” (=Moku Manu, or Nihoa)]; 1937: 214, pl. 65, figs. 2, 3 [Kaua‘i, O‘ahu, Moloka‘i, Hawai‘i]. — Edmondson 1925: 31 [French Frigate Shoals]; 1946: 271 [H.I.]. — Titcomb et al. 1979: 370 [H.I.]. — Galil 1997: 293, figs. 10c, 12, 13c, 31 [O‘ahu]. — Ng 2000: 951, fig. 5h–l [H.I.]. — Godwin & Bolick 2006: 38, 48 [Moloka‘i]. — Hoover 2006: 267, color photograph [O‘ahu].
 Calappa cf. gallus (Herbst, 1803) — Russo 1994: 68, color photograph [H.I.].
 Taxonomy. Galil (1997), Ng (2000)
 Geographical distribution. Circumtropical
 Habitat. Buries in sand; intertidal, shallow subtidal to bathyal, to 216 m.
description: Published as part of Castro, Peter, 2011, Catalog of the anomuran and brachyuran crabs (Crustacea: Decapoda: Anomura, Brachyura) of the Hawaiian Islands 2947, pp. 1-154 in Zootaxa 2947 (1) on page 39, DOI: 10.11646/zootaxa.2947.1.1, http://zenodo.org/record/5283044
Comprehensive molecular characterization of mitochondrial genomes in human cancers
Creators: name: Yuan, Yuan
name: Ju, Young Seok
name: Kim, Youngwook
name: Li, Jun
name: Wang, Yumeng
name: Yoon, Christopher J.
name: Yang, Yang
name: Martincorena, Inigo
name: Creighton, Chad J.
name: Weinstein, John N.
name: Xu, Yanxun
name: Han, Leng
name: Kim, Hyung-Lae
name: Nakagawa, Hidewaki
name: Park, Keunchil
name: Campbell, Peter J.
name: Liang, Han
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Analysis
/631/67
/631/208/212
/45/23
analysis

description: Abstract: Mitochondria are essential cellular organelles that play critical roles in cancer. Here, as part of the International Cancer Genome Consortium/The Cancer Genome Atlas Pan-Cancer Analysis of Whole Genomes Consortium, which aggregated whole-genome sequencing data from 2,658 cancers across 38 tumor types, we performed a multidimensional, integrated characterization of mitochondrial genomes and related RNA sequencing data. Our analysis presents the most definitive mutational landscape of mitochondrial genomes and identifies several hypermutated cases. Truncating mutations are markedly enriched in kidney, colorectal and thyroid cancers, suggesting oncogenic effects with the activation of signaling pathways. We find frequent somatic nuclear transfers of mitochondrial DNA, some of which disrupt therapeutic target genes. Mitochondrial copy number varies greatly within and across cancers and correlates with clinical variables. Co-expression analysis highlights the function of mitochondrial genes in oxidative phosphorylation, DNA repair and the cell cycle, and shows their connections with clinically actionable genes. Our study lays a foundation for translating mitochondrial biology into clinical applications.
Slow dynamics in a single glass bead
Creators: name: Yoritomo, John Y.
name: Weaver, Richard L.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Classical Physics (physics.class-ph)
subject: Geophysics (physics.geo-ph)
subject: FOS: Physical sciences

description: Slow dynamic nonlinearity is ubiquitous amongst brittle materials, such as rocks and concrete, with cracked microstructures. A defining feature of the behavior is the logarithmic-in-time recovery of stiffness after a mechanical conditioning. Materials observed to exhibit slow dynamics are sufficiently different in microstructure, chemical composition, and scale (ranging from the laboratory to the seismological) to suggest some kind of universality. There lacks a consensus theoretical understanding of the universality in general and the log(time) recovery in particular. Seminal studies were focused on sandstones and other natural rocks, but in recent years other experimental venues have been introduced with which to inform theory. One such system is unconsolidated glass bead packs. However, bead packs still contain many contact points. The force distribution amongst the contacts is unknown. Here, we present slow dynamics measurements on a yet simpler system - a single glass bead confined between two large glass plates. The system is designed with a view towards rapid control of the contact zone environment. Ultrasonic waves are used as a probe of the system, and changes are assessed with coda wave interferometry. Three different methods of low-frequency conditioning are applied; all lead to slow dynamic recoveries. Results imply that force chains do not play an essential role in granular media slow dynamics, as they are absent in our system.
description: 25 pages, 11 figures. arXiv admin note: text overlap with arXiv:1908.08935
PRODUCTION AND PRICE STRUCTURE OF POTATO IN BANGLADESH
Creators: name: Sabur, S. Abdus
name: Sabur, S. Abdus
Publisher: name: Unknown
Year: 1986
Subjects: Research and Development/Tech Change/Emerging Technologies

description: This study is an attempt to estimate the growth rates in area, production and productivity of potato and to study the behaviour of tread, seasonal fluctuation and existence of cycles of potato price in Bangladesh. 'The study shows that the production of potato in Bangladesh increased by more than 5 percent per annum whereas the growth rate in area and productivity were over 3 and 2 percent respectively during 21 the lost two decades. The current price of potato increased significantly over the years but wide seasonal fluctuation occurred in all the selected markets. There is no cycle of potato price but the correligram analysis shows oscillation in a remarkable way in all the markets.
Calappa pokipoki Ng 2000
Creators: name: Castro, Peter
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Calappidae
Calappa
Calappa pokipoki

description: Calappa pokipoki Ng, 2000
 Calappa pokipoki Ng, 2000: 945, figs. 1–4, 5a–g, 6 [type locality: Hawai‘i, also from O‘ahu, Moloka‘i; holotype: BPBM S12073].
 Additional Hawaiian Is. records:
 Calappa bicornis Miers, 1886 — Tinker 1965: 74, pl. 25 [H.I.].
 Calappa cf bicornis Miers, 1884 — De Grave et al. 2009: fig. 5F, color photograph [French Frigate Shoals].
 Taxonomy. Ng (2000)
 Geographical distribution. Only known from the Hawaiian Is.
 Habitat. Buries in sand; subtidal, 30–182 m.
description: Published as part of Castro, Peter, 2011, Catalog of the anomuran and brachyuran crabs (Crustacea: Decapoda: Anomura, Brachyura) of the Hawaiian Islands 2947, pp. 1-154 in Zootaxa 2947 (1) on page 40, DOI: 10.11646/zootaxa.2947.1.1, http://zenodo.org/record/5283044
Gravitational dipole radiations from binary systems
Creators: name: Gerard, J. -M.
name: Wiaux, Y.
Publisher: name: arXiv
Year: 2001
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Astrophysics (astro-ph)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We investigate the possibility of generating sizeable dipole radiations in relativistic theories of gravity. Optimal parameters to observe their effects through the orbital period decay of binary star systems are discussed. Constraints on gravitational couplings beyond general relativity are derived.
description: One comment added, accepted for publication in Phys. Rev. D
SOME ASPECTS OF JUTE GROWERS' COOPERATIVES IN, MYMENSINGH DISTRICT
Creators: name: Ali, Md. Harun
name: Salehin, Md. Shamsus
name: Ali, Md. Harun
name: Salehin, Md. Shamsus
Publisher: name: Unknown
Year: 1986
Subjects: Research and Development/Tech Change/Emerging Technologies

description: Jute is an important cash crop in Bangladesh but its per acre yield is low because traditional variety and related technologies are used. An intensive jute cultivation programme is in operation for some year for modernizing jute cultivation through organizing jute growers' associations. This paper assesses the performance of some selected jute growers' associations including the beae6q accrued to the member-farmers due to the formation of the societies.
MOESM3 of Mathematical model of hypoxia and tumor signaling interplay reveals the importance of hypoxia and cell-to-cell variability in tumor growth inhibition
Creators: name: Chen, Emile
name: Song, Roy
name: Xueer Chen
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Additional file 3: Table S3a. Reactions for tumor signaling module. The reactions, rate equations and parameters for the tumor signaling module. Unless otherwise specified, the reactions and rate constants were taken or modified from Zhang et al. [33], Kholodenko et al. [34], Sasagawa et al. [35]. Additions by the authors are superscripted with a, b, or c, respectively. Table S3b. Reactions for hypoxia signaling module. The reactions, rate equations and parameters for the hypoxia signaling module. The reactions and rate constants were taken or modified from Kohn et al. [32].
The Halo Occupation Distribution and the Physics of Galaxy Formation
Creators: name: Berlind, Andreas A.
name: Weinberg, David H.
name: Benson, Andrew J.
name: Baugh, Carlton M.
name: Cole, Shaun
name: Davé, Romeel
name: Frenk, Carlos S.
name: Jenkins, Adrian
name: Katz, Neal
name: Lacey, Cedric G.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The halo occupation distribution (HOD) describes the bias between galaxies and dark matter by specifying (a) the probability P(N|M) that a halo of virial mass M contains N galaxies of a particular class and (b) the relative distributions of galaxies and dark matter within halos. We calculate predicted HODs for a Lambda-CDM cosmological model using an SPH hydrodynamic simulation and a semi-analytic (SA) galaxy formation model. Although the two methods predict different galaxy mass functions, their HOD predictions agree remarkably well. For mass-selected samples, the mean occupation exhibits a sharp cutoff at low halo masses, a slowly rising plateau for ~1-2, and a more steeply rising high occupancy regime. At low , the mean pair and triple counts are well below Poisson expectations, with important consequences for small scale behavior of 2- and 3-point correlation functions. The HOD depends strongly on galaxy age, with high mass halos populated mainly by old galaxies and low mass halos by young galaxies. The SPH simulation supports several simplifying assumptions about HOD bias: the most massive galaxy in a halo usually lies close to the center and moves near the halo's mean velocity; satellite galaxies have the same radial profile and velocity dispersion as the dark matter; and the mean occupation at fixed halo mass is independent of the halo's larger scale environment. By applying the SPH and SA HODs to a large volume N-body simulation, we show that both methods predict slight, observable departures from a power-law galaxy correlation function. The predicted HODs are closely tied to the underlying galaxy formation physics, they offer useful guidance to theoretical models of galaxy clustering, and they will be tested empirically by ongoing analyses of galaxy redshift surveys. (Shortened)
description: 55 pages including 23 eps figures. Replaced with accepted version (ApJ in press)
Cycloes marisrubri Galil & Clark 1996
Creators: name: Castro, Peter
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Calappidae
Cycloes
Cycloes marisrubri

description: Cycloes marisrubri Galil & Clark, 1996
 Cycloes marisrubri Galil & Clark, 1996: 197, figs. 6B, 9C, 10D–F, 12 [type locality: Jordan (Red Sea); also from Kaua‘i, O‘ahu, Moloka‘i; holotype: MNHN-B22847].
 Additional Hawaiian Is. records:
 Cycloes granulosa De Haan, 1837 — Rathbun 1906: 888 [Kaua‘i, Moloka‘i]. — Edmondson 1945: 271 [O‘ahu]. — Tinker 1965: 76, pl. 26 [H.I.]. (not Cycloes granulosa De Haan, 1837)
 Cycloes marisrubri Galil & Clark, 1996 — Hoover 2006: 268, color photograph [O‘ahu].
 Taxonomy. Galil & Clark (1996)
 Geographical distribution. Across Indo-West Pacific region.
 Habitat. Buries in sand; subtidal, 19–131 m.
description: Published as part of Castro, Peter, 2011, Catalog of the anomuran and brachyuran crabs (Crustacea: Decapoda: Anomura, Brachyura) of the Hawaiian Islands 2947, pp. 1-154 in Zootaxa 2947 (1) on page 40, DOI: 10.11646/zootaxa.2947.1.1, http://zenodo.org/record/5283044
Bit Threads and the Membrane Theory of Entanglement Dynamics
Creators: name: Agón, Cesar A.
name: Mezei, Márk
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Recently, an effective {\it membrane theory} was proposed that describes the ``hydrodynamic'' regime of the entanglement dynamics for general chaotic systems. Motivated by the new {\it bit threads} formulation of holographic entanglement entropy, given in terms of a convex optimization problem based on flow maximization, or equivalently tight packing of bit threads, we reformulate the membrane theory as a max flow problem by proving a max flow-min cut theorem. In the context of holography, we explain the relation between the max flow program dual to the membrane theory and the max flow program dual to the holographic surface extremization prescription by providing an explicit map from the membrane to the bulk, and derive the former from the latter in the ``hydrodynamic'' regime without reference to minimal surfaces or membranes.
description: 31 pages, 8 figures; v2: Improved figures, references added, a new discussion section was included, matches the published version
The local impact of centralized irrigation control in Pakistan: a socio-centric perspective
Creators: name: Merrey, D. J.
name: Merrey, D. J.
Publisher: name: Unknown
Year: 1986
Subjects: subject: International Development
subject: Irrigation systems
subject: History
subject: Waterlogging

description: Reprinted with permission from Lands at Risk in the Third World: Local Level Perspectives, edited by Peter D. Little and Michael M. Horowitz, Boulder, CO, Westview Press, 1986. The paper analyzes changes in local resource management strategies and the environmental impact of centralized irrigation management in the Indus Basin since the mid-19th century. These changes are viewed primarily as responses to increasing interventions of the state, and the co-opting through centralization of what had been local functions by higher level bodies. This in turn has led to an inability to respond to local level problems before they reach crisis proportions. To interpret the trends and identify key problems and issues, the paper draws upon a systems theory model of the evolution of the state that was originally developed by scholars interested in the demise of Mesopotamian civilization. The analysis provides the basis for a short critique of present development programs and for identifying several key research questions.
description: In Merrey, D. J.; Wolf, J. M. Irrigation management in Pakistan: four papers. Digana Village, Sri Lanka: International Irrigation Management Institute (IIMI).
Additional file 7 of gCAnno: a graph-based single cell type annotation method
Creators: name: Yang, Xiaofei
name: Gao, Shenghan
name: Wang, Tingjie
name: Yang, Boyu
name: Dang, Ningxin
name: Ye, Kai
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 7: Figure S4. The tSNE plot of (a) mCel-seq2 liver, (b) 10x liver, (c) Drop-seq pancreas and (d) Smart-seq2 pancreas.
MOESM2 of Mathematical model of hypoxia and tumor signaling interplay reveals the importance of hypoxia and cell-to-cell variability in tumor growth inhibition
Creators: name: Chen, Emile
name: Song, Roy
name: Xueer Chen
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: Plant Biology
subject: Computational Biology

description: Additional file 2: Table S2a. Initial values for species in the tumor signaling module [45, 46]. A table of species and initial concentrations for the tumor signaling module. Table S2b. Initial values for species in the hypoxia signaling module. A table of species and initial concentrations for the hypoxia signaling module.