cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Figure S5 from Trophy hunters pay more to target larger-bodied carnivores
Creators: name: Mihalik, Ilona
name: Bateman, Andrew W.
name: Darimont, Chris T.
Publisher: name: The Royal Society
Year: 2019
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 179999 Psychology and Cognitive Sciences not elsewhere classified
subject: FOS: Psychology

description: Figure S5. Top model (Table 2) with latitude replacing mass, suggesting latitude does not have the same relationship with guide price as mass.
title: Public poetry
title: encountering the lyric in urban space
titleType: Subtitle
Creators: name: Benthien, Claudia
Publisher: name: Trier University
Year: 2020
Subjects: subject: Lyrik
subject: Gegenwart
subject: Öffentlicher Raum
subject: Straßenkunst
subject: Streetart
subject: Slam Poetry

description: This paper explores the presence of the poetic word in contemporary urban settings: from “Poetry in Motion,” displayed in the New York City subway at the very place where one usually finds ads, to fluid xenon light projections of huge verse on the exterior of buildings in Basel or Zurich by visual artist Jenny Holzer, who presents poems of the Nobel Laureate Wisława Szymborska together with her own short “Truisms.” Or from single poems permanently written on walls – e.g. a much-discussed concrete poem by Eugen Gomringer at the facade of a Berlin college of education – to the technically enhanced spoken word, audible from far away as a side effect of gigantic poetry slam events in stadiums, e.g. the Trabrennbahn (race course) in Hamburg and even performative events such as Ulrike Almut Sandig’s „augenpost“ in which poems are ‘published’ on posters, flyers and free postcards in the urban space of Leipzig or declaimed on public squares in Indian metropolises through a megaphone. Such presentations of poetry in urban space are still uncommon, thus creating an aesthetic experience that differs strongly from reception in private settings or even in readings or public poetry festivals, as the poem relates to its urban surroundings.
Additional file 2 of Evaluations of candidate markers of dihydroartemisinin-piperaquine resistance in Plasmodium falciparum isolates from the China–Myanmar, Thailand–Myanmar, and Thailand–Cambodia borders
Creators: name: Ye, Run
name: Zhang, Yilong
name: Zhang, Dongmei
Publisher: name: figshare
Year: 2022
Subjects: subject: Physical Sciences not elsewhere classified
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Pharmacology
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 7: Figure S1. The K13 mutation status, plasmepsin 2/3 amplification status, and PfCRT mutation status by site and country. (a) KelchX mutation status indicates parasites with a K13 mutation other than C580Y and F446I. (b) “Single copy” indicates parasites without amplification of plasmepsin 2/3. (c) Other (PfCRT) alleles indicate parasites carrying no mutations at positions 93, 97, 145, 218, 343, 350, and 353 of the pfcrt gene. The shapefile map of Southwestern China, Cambodia, Myanmar, and other countries was downloaded and prepared by using Pixelmap Generator-Beta online (amCharts, Vilnius, Lithuania) (https://pixelmap.amcharts.com/), which is copyright free.
Figure S2 from Trophy hunters pay more to target larger-bodied carnivores
Creators: name: Mihalik, Ilona
name: Bateman, Andrew W.
name: Darimont, Chris T.
Publisher: name: The Royal Society
Year: 2019
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 179999 Psychology and Cognitive Sciences not elsewhere classified
subject: FOS: Psychology

description: Figure S2. (a) Model-averaged and (b) global model predictions for the presence and absence of a ‘dangerous’ and/or ‘difficult’ description included in the Safari Club International (SCI) online record book hunt remarks section. Predictions include mean values for conservation status and mass terms. Points indicate the predictions for expected mean prices for each classification (carnivore or ungulate). Lines indicate the 95% confidence level.
Market Competition in Export Cash Crops and Farm Income
Creators: name: Depetris Chauvin, Nicolas
name: Porto, Guido G.
name: Depetris Chauvin, Nicolas
name: Porto, Guido G.
Publisher: name: Unknown
Year: 2011
Subjects: subject: Agribusiness
subject: Community/Rural/Urban Development
subject: Consumer/Household Economics
subject: Crop Production/Industries
subject: Demand and Price Analysis
subject: International Development
subject: International Relations/Trade
subject: Agriculture
subject: Value Chains
subject: Cash Crops
subject: Poverty
subject: Market Competition
subject: Smallholders

description: This paper studies how the internal structure of agriculture export markets and the level of competition affect poverty and welfare in rural areas in Africa. We develop a game-theory model of supply chains in cash crop agriculture between many atomistic smallholders and a few exporters. The model provides the tools needed to simulate the changes in farm-gate prices of export crops given hypothetical changes in the structure of the supply chain. Using household surveys, we assess the poverty impacts of those changes in the value chains for twelve case studies. We investigate the average impact for all rural households, the distribution of these impacts for poor vis-à-vis non-poor households, and the differences in impacts between male- and female-headed households. Overall we find that an increase in competition among processors is good for the farmers. However, small changes to the level of competition are unlikely to have significant effects on farmers’ livelihood. We also find that, on average, non-poor, male headed household are the ones that benefit the most from an increase in competition. The introduction of outgrower contracts in our model only produces significant changes in the simulations of one of our case studies.
Anisotropic s-wave superconductivity: comparison with experiments on MgB2 single crystals
Creators: name: Posazhennikova, A. I.
name: Dahm, T.
name: Maki, K.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: The recently discovered superconductivity in MgB2 has captured world attention due to its simple crystal structure and relatively high superconducting transition temperature Tc=39K. It appears to be generally accepted that it is phonon-mediated s-wave BCS-like superconductivity. Surprisingly, the strongly temperature dependent anisotropy of the upper critical field, observed experimentally in magnesium diboride single crystals, is still lacking a consistent theoretical explanation. We propose a simple single-gap anisotropic s-wave order parameter in order to compare its implications with the prediction of a multi-gap isotropic s-wave model. The quasiparticle density of states, thermodynamic properties, NMR spin-lattice relaxation rate, optical conductivity, and Hc2 anisotropy have been analyzed within this anisotropic s-wave model. We show that the present model can capture many aspects of the unusual superconducting properties of MgB2 compound, though more experimental data appear to be necessary from single crystal MgB2.
description: 7 pages, 6 figures, some minor changes, to appear in Europhys. Lett
Additional file 1 of Prevalence and changes in boredom, anxiety and well-being among Ghanaians during the COVID-19 pandemic: a population-based study
Creators: name: Godfred O. Boateng
name: Doku, David Teye
name: Enyan, Nancy Innocentia Ebu
name: Owusu, Samuel Asiedu
name: Aboh, Irene Korkoi
name: Kodom, Ruby Victoria
name: Benard Ekumah
name: Quansah, Reginald
name: Boamah, Sheila A.
name: Obiri-Yeboah, Dorcas
name: Epaphrodite Nsabimana
name: Jansen, Stefan
name: Armah, Frederick Ato
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy

description: Additional file 1: Supplementary Table 1. Univariate statistics and alpha values of outcome measures used in assessing psychological well-being, and symptoms of anxiety and boredom.
Additional file 1 of The effect of antibiotics on the gut microbiome: a metagenomics analysis of microbial shift and gut antibiotic resistance in antibiotic treated mice
Creators: name: Xu, Lei
name: Surathu, Anil
name: Raplee, Isaac
name: Chockalingam, Ashok
name: Stewart, Sharron
name: Walker, Lacey
name: Sacks, Leonard
name: Patel, Vikram
name: Li, Zhihua
name: Rouse, Rodney
Publisher: name: figshare
Year: 2020
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Pharmacology
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Additional file 1: Supplementary Figure 1. Principle Coordinate Analysis (PCoaA) based on Bray–Curtis dissimilarity of ARG abundances for all sample groups across all three cohorts Ampicillin (A), Ciprofloxacin (B), and Fosfomycin (C). Supplementary Table 1. Sample read counts. Supplementary Table 7. Shared species.
Multiple imputation of missing values: New features for mim
Creators: name: Royston, Patrick
name: Carlin, John B.
name: White, Ian R.
name: Royston, Patrick
name: Carlin, John B.
name: White, Ian R.
Publisher: name: Unknown
Year: 2009
Subjects: subject: Research Methods/ Statistical Methods
subject: mim
subject: multiple imputation
subject: missing data
subject: missing at random
subject: ice
subject: MICE

description: We present an update of mim, a program for managing multiply imputed datasets and performing inference (estimating parameters) using Rubin’s rules for combining estimates from imputed datasets. The new features of particular importance are an option for estimating the Monte Carlo error (due to the sampling variability of the imputation process) in parameter estimates and in related quantities, and a general routine for combining any scalar estimate across imputations.
Phase selection and microstructure of slowly solidified Al-Cu-Fe alloys
Creators: name: Kamaeva, L. V.
name: Sterkhova, I. V.
name: Ladyanov, V. I.
name: Ryltsev, R. E.
name: Chtchelkatchev, N. M.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The search for effective methods to fabricate bulk single-phase quasicrystalline Al-Cu-Fe alloys is currently an important task. Crucial to solving this problem is to understand mechanisms of phase formation in this system. Here we study crystallization sequence during solidification as well as the conditions of solid phase formation in slowly solidified Al-Cu-Fe alloys in a wide range of compositions. Concentration dependencies of undercoolability were also constructed by differential thermal analysis method. These experimental results are compared with data on chemical short-range order in the liquid state determined from \textit{ab initio} molecular dynamic simulations. We observe that main features of interatomic interaction in the Al-Cu-Fe alloys are similar for both liquid and solid states and they change in the vicinity of i-phase composition. In the concentration region, where the i-phase forms from the melt, both the undercoolability and the crystallization character depend on the temperature of the melts before cooling.
description: 4 pages, 5 figures
Conceptualizing RFI's Versus GFI's
Creators: name: Kanbur, Ravi
name: Kanbur, Ravi
Publisher: name: Unknown
Year: 2002
Subjects: International Development

description: What is the rationale for the coexistence of Global Financial Institutions (like the World Bank) and Regional Financial Institutions (like the Regional Development Banks)? This paper conceptualizes the differences between these entities and develops a framework for assessing their comparative strengths and weaknesses in delivering different types of development assistance. It argues that in general there is scope for shifting some of the functions currently performed by global institutions to regional ones, leaving the former with increased capacity for global functions that only they can perform.
Excitonic magneto-optics in monolayer transition metal dichalcogenides: From nanoribbons to two-dimensional response
Creators: name: Have, J.
name: Peres, N. M. R.
name: Pedersen, T. G.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The magneto-optical response of monolayer transition metal dichalcogenides (TMDs), including excitonic effects, is studied using a nanoribbon geometry. We compute the diagonal optical conductivity and the Hall conductivity. Comparing the excitonic optical Hall conductivity to results obtained in the independent particle approximation, we find an increase in the amplitude corresponding to one order of magnitude when excitonic effects are included. The Hall conductivities are used to calculate Faraday rotation spectra for MoS2 and WSe2. Finally, we have also calculated the diamagnetic shift of the exciton states of WSe2 in different dielectric environments. Comparing the calculated diamagnetic shift to recent experimental measurements, we find a very good agreement between the two.
Amphisbaena gonavensis Gans and Alexander
Creators: name: GANS, CARL
Publisher: name: Zenodo
Year: 2005
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Reptilia
Squamata
Amphisbaenidae
Amphisbaena
Amphisbaena gonavensis

description: Amphisbaena gonavensis Gans and Alexander
 Amphisbaena innocens gonavensis Gans and Alexander, 1962: 111. TYPE LOCALITY: ‘‘ Point à Roquettes, Gonave Island, Haiti’ ’. Holotype: YPM 3384. Paratypes: MCZ 25549 (Petite Gonave); YPM 3385–3389; USNM 10168 (Gonave).
DISCUSSION OF FORM: R. Thomas (1965b: 1). See also Cusumano and Powell (1991, diet), Henderson and Schwartz (1984, identification), Henderson et al. (1984, identification), Powell (1992, distribution), Schwartz and Henderson (1991), Schwartz and Thomas (1975, distribution), and Thomas and Thomas (1978, ecology).
RANGE: Gonave and Petite Gonave, Hispaniola.
description: Published as part of GANS, CARL, 2005, Checklist And Bibliography Of The Amphisbaenia Of The World, pp. 1-130 in Bulletin of the American Museum of Natural History 2005 (289) on page 14, DOI: 10.1206/0003-0090(2005)289<0001:CABOTA>2.0.CO;2, http://zenodo.org/record/5361528
Figure S4 from Trophy hunters pay more to target larger-bodied carnivores
Creators: name: Mihalik, Ilona
name: Bateman, Andrew W.
name: Darimont, Chris T.
Publisher: name: The Royal Society
Year: 2019
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 179999 Psychology and Cognitive Sciences not elsewhere classified
subject: FOS: Psychology

description: Figure S4. Predictions (solid line) for the relationship between latitude (decimal degrees; calculated by using the average latitude for each jurisdiction) and mass, for carnivore (orange) and ungulate (blue) species. Points show raw mass data. Shading indicates 95% confidence levels for predictions.
Entropy of vortex cores on the border of the superconductor-to-insulator transition in an underdoped cuprate
Creators: name: Capan, C.
name: Behnia, K.
name: Hinderer, J.
name: Jansen, A. G. M.
name: Lang, W.
name: Marcenat, Ch.
name: Marin, Ch.
name: Flouquet, J.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We present a study of Nernst effect in underdoped $La_{2-x}Sr_xCuO_4$ in magnetic fields as high as 28T. At high fields, a sizeable Nernst signal was found to persist in presence of a field-induced non-metallic resistivity. By simultaneously measuring resistivity and the Nernst coefficient, we extract the entropy of vortex cores in the vicinity of this field-induced superconductor-insulator transition. Moreover, the temperature dependence of the thermo-electric Hall angle provides strong constraints on the possible origins of the finite Nernst signal above $T_c$, as recently discovered by Xu et al.
description: 5 Pages inculding 4 figures
Deformed Chern-Simons interaction for nonrelativistic point particles
Creators: name: Stichel, P. C.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We deform the interaction between nonrelativistic point particles on a plane and a Chern-Simons field to obtain an action invariant with respect to time-dependent area-preserving diffeomorphisms. The deformed and undeformed Lagrangians are connected by a point transformation leading to a classical Seiberg-Witten map between the corresponding gauge fields. The Schroedinger equation derived by means of Moyal-Weyl quantization from the effective two-particle interaction exhibits - a singular metric, leading to a splitting of the plane into an interior (bag-) and an exterior region, - a singular potential (quantum correction) with singularities located at the origin and at the edge of the bag. We list some properties of the solutions of the radial Schroedinger equation.
description: 7 pages, LaTeX Some references added
The Potential of FAST in Detecting Celestial Hydroxyl Masers and Related Science Topics
Creators: name: Zhang, J. S.
name: Li, D.
name: Wang, J. Z.
name: Zhu, Q. F.
name: Li, J.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: The Five Hundred Meter Aperture Spherical Radio Telescope (FAST) will make contributions to the study of Galactic and extragalactic masers. The telescope, now finished construction and commissioning in China, has an innovative design that leads to the highest sensitivity of any single dish telescope in the world. FAST's potential for OH megamaser research is discussed, including the sky density of masers detectable in surveys. The scientific impact expected from FAST maser studies is also discussed.
description: 9 pages, 2 figures. Published in Research in Astronomy and Astrophysics
Additional file 1 of 2D cine vs. 3D self-navigated free-breathing high-resolution whole heart cardiovascular magnetic resonance for aortic root measurements in congenital heart disease
Creators: name: Nussbaumer, Clément
name: Bouchardy, Judith
name: Blanche, Coralie
name: Piccini, Davide
name: Anna-Giulia Pavon
name: Monney, Pierre
name: Stuber, Matthias
name: Schwitter, Jürg
name: Rutz, Tobias
Publisher: name: figshare
Year: 2021
Subjects: subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology

description: Additional file 1. Additional figures and tables.
Further development of flexible parametric models for survival analysis
Creators: name: Lambert, Paul C.
name: Royston, Patrick
name: Lambert, Paul C.
name: Royston, Patrick
Publisher: name: Unknown
Year: 2009
Subjects: subject: Research Methods/ Statistical Methods
subject: stpm2
subject: survival analysis
subject: relative survival
subject: time-dependent effects

description: Royston and Parmar (2002, Statistics in Medicine 21: 2175–2197) developed a class of flexible parametric survival models that were programmed in Stata with the stpm command (Royston, 2001, Stata Journal 1: 1–28). In this article, we introduce a new command, stpm2, that extends the methodology. New features for stpm2 include improvement in the way time-dependent covariates are modeled, with these effects far less likely to be over parameterized; the ability to incorporate expected mortality and thus fit relative survival models; and a superior predict command that enables simple quantification of differences between any two covariate patterns through calculation of time-dependent hazard ratios, hazard differences, and survival differences. The ideas are illustrated through a study of breast cancer survival and incidence of hip fracture in prostate cancer patients.
Photorealistic modelling of metals from first principles
Creators: name: Prandini, Gianluca
name: Rignanese, Gian-Marco
name: Marzari, Nicola
Publisher: name: arXiv
Year: 2019
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The colours of metals have attracted the attention of humanity since ancient times, and coloured metals, in particular gold compounds, have been employed for tools and objects symbolizing the aesthetics of power. In this work we develop a comprehensive framework to obtain the reflectivity and colour of metals, and show that the trends in optical properties and the colours can be predicted by straightforward first-principles techniques based on standard approximations. We apply this to predict reflectivity and colour of several elemental metals and of different types of metallic compounds (intermetallics, solid solutions and heterogeneous alloys), considering mainly binary alloys based on noble metals. We validate the numerical approach through an extensive comparison with experimental data and the photorealistic rendering of known coloured metals.
Distributed representation of multi-sense words: A loss-driven approach
Creators: name: Manchanda, Saurav
name: Karypis, George
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computation and Language (cs.CL)
subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: Word2Vec's Skip Gram model is the current state-of-the-art approach for estimating the distributed representation of words. However, it assumes a single vector per word, which is not well-suited for representing words that have multiple senses. This work presents LDMI, a new model for estimating distributional representations of words. LDMI relies on the idea that, if a word carries multiple senses, then having a different representation for each of its senses should lead to a lower loss associated with predicting its co-occurring words, as opposed to the case when a single vector representation is used for all the senses. After identifying the multi-sense words, LDMI clusters the occurrences of these words to assign a sense to each occurrence. Experiments on the contextual word similarity task show that LDMI leads to better performance than competing approaches.
description: PAKDD 2018 Best paper award runner-up
Amphisbaena gracilis Strauch
Creators: name: GANS, CARL
Publisher: name: Zenodo
Year: 2005
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Reptilia
Squamata
Amphisbaenidae
Amphisbaena
Amphisbaena gracilis

description: Amphisbaena gracilis Strauch
 Amphisbaena gracilis Strauch, 1881, col. 70. TYPE LOCALITY: ‘‘Unbekannt, wahrscheinlich Süd­Amerika’’. Holotype: ZIL 5517.
DISCUSSION OF FORM: Gans (1967c: species inquirenda). The status of this form is in considerable doubt. See also Gorzula (1985, distribution), Gorzula and Señaris (1999), Hoogmoed and Avila­Pires (1991), and Sponga and Gans (1971, taxonomy).
RANGE: Known from this type only, Venezuela (Bolivar).
description: Published as part of GANS, CARL, 2005, Checklist And Bibliography Of The Amphisbaenia Of The World, pp. 1-130 in Bulletin of the American Museum of Natural History 2005 (289) on page 14, DOI: 10.1206/0003-0090(2005)289<0001:CABOTA>2.0.CO;2, http://zenodo.org/record/5361528
title: Introduction à la mécanique et la thermodynamique des milieux continus
Creators: name: MAREAU Charles
Publisher: name: My University
Year: 2025
Subjects: subject: Grandes déformations
subject: Lois de comportement

description: Ce document constitue une introduction aux concepts fondamentaux permettant de modéliser les milieux continus dans un contexte particulier, celui de la thermomécanique. Il est à destination des chercheurs et enseignants qui, pour aborder des problèmes tels que ceux rencontrés en mise en forme ou en dimensionnement, souhaitent découvrir ou approfondir les notions théoriques essentielles à la mise en place d'une démarche de modélisation.
description: Ce document constitue une introduction aux concepts fondamentaux permettant de modéliser les milieux continus dans un contexte particulier, celui de la thermomécanique. Il est scindé en deux parties : - La première partie se concentre sur les concepts nécessaires à l'établissement des équations de conservation, i.e. l'ensemble des équations qui résultent de l'application de principes physiques fondamentaux. Comme l'indique leur nom, ces équations traduisent le fait que certaines quantités (e.g., masse, énergie) doivent être conservées quelle que soit la nature des matériaux qui composent un système. - La seconde partie est dédiée à la construction des équations de comportement. Quand bien même certaines restrictions existent, le processus d'écriture de ces équations, qui permettent de représenter le comportement des matériaux qui composent un système, se voit accorder plus de liberté que pour les équations de conservation. Le prix de cette liberté est la simplicité. Les équations de comportement doivent en effet être établies en cherchant un compromis entre complexité et acuité de la description, l'un étant souvent l'antagoniste de l'autre. Les outils utiles à la modélisation du comportement, ainsi des exemples de lois de comportement qui illustrent cette recherche de compromis, sont détaillés dans la seconde partie.
description: Doctorat
Additional file 2 of Pre-digest of unprotected DNA by Benzonase improves the representation of living skin bacteria and efficiently depletes host DNA
Creators: name: Amar, Yacine
name: Lagkouvardos, Ilias
name: Silva, Rafaela L.
name: Oluwaseun Ayodeji Ishola
name: Foesel, Bärbel U.
name: Kublik, Susanne
name: Schöler, Anne
name: Niedermeier, Sebastian
name: Bleuel, Rachela
name: Zink, Alexander
name: Neuhaus, Klaus
name: Schloter, Michael
name: Biedermann, Tilo
name: Köberle, Martin
Publisher: name: figshare
Year: 2021
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics

description: Additional file 1: Supplementary Figure S1. Benzonase digest approach efficiently depletes dead bacteria and free bacterial DNA reads. Microbial DNA was extracted using a conventional approach (CA) or the benzonase-digest approach (BDA) before bacterial lysis. a) Microbiome analysis of a skin mock community supplemented with live E. coli cells, heat inactivated (hi) E. coli cells or E. coli free DNA. b) Relative abundance reads resulting from E. coli in the mock community. c) Microbiome analysis at genus level of forearm skin samples spiked with hi E. coli or E. coli free DNA. d) Relative abundance of E. coli reads in spiked skin samples. P valued were calculated using Wilcoxon-Mann-Whitney test. * p ≤ 0.05, ** p ≤ 0.01, *** p≤ 0.001.
Towards Characterizing the Non-Locality of Entangled Quantum States
Creators: name: Renner, Renato
name: Wolf, Stefan
Publisher: name: arXiv
Year: 2002
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The behavior of entangled quantum systems can generally not be explained as being determined by shared classical randomness. In the first part of this paper, we propose a simple game for n players demonstrating this non-local property of quantum mechanics: While, on the one hand, it is immediately clear that classical players will lose the game with substantial probability, it can, on the other hand, always be won by players sharing an entangled quantum state. The simplicity of the classical analysis of our game contrasts the often quite involved analysis of previously proposed examples of this type. In the second part, aiming at a quantitative characterization of the non-locality of n-partite quantum states, we consider a general class of n-player games, where the amount of communication between certain (randomly chosen) groups of players is measured. Comparing the classical communication needed for both classical players and quantum players (initially sharing a given quantum state) to win such a game, a new type of separation results is obtained. In particular, we show that in order to simulate two separated qubits of an n-partite GHZ state at least (roughly) log(log(n)) bits of information are required.
description: 16 pages, LaTeX
Amphisbaena hiata Montero and Céspedes
Creators: name: GANS, CARL
Publisher: name: Zenodo
Year: 2005
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Reptilia
Squamata
Amphisbaenidae
Amphisbaena
Amphisbaena hiata

description: Amphisbaena hiata Montero and Céspedes   2002
 Amphisbaena hiata Montero and Céspedes, 2002: 792. TYPE LOCALITY: Argentina: Corrientes Province, Capital Department, Laguna Brava (27 ° 30 ̍ S, 58 ° 43 ̍ W). Holotype: MZUSP 91638.
DISCUSSION OF FORM: Yanosky et al. (1993), Montero (1993a, b; 1994, 1996b, 2004).
RANGE: Argentina (Formosa, Corrientes provinces).
description: Published as part of GANS, CARL, 2005, Checklist And Bibliography Of The Amphisbaenia Of The World, pp. 1-130 in Bulletin of the American Museum of Natural History 2005 (289) on page 15, DOI: 10.1206/0003-0090(2005)289<0001:CABOTA>2.0.CO;2, http://zenodo.org/record/5361528
Additional file 1 of Utilization of five data mining algorithms combined with simplified preprocessing to establish reference intervals of thyroid-related hormones for non-elderly adults
Creators: name: Zhong, Jian
name: Ma, Chaochao
name: Hou, Li’an
name: Yin, Yicong
name: Zhao, Fang
name: Hu, Yingying
name: Song, Ailing
name: Wang, Danchen
name: Li, Lei
name: Cheng, Xinqi
name: Qiu, Ling
Publisher: name: figshare
Year: 2023
Subjects: subject: Artificial Intelligence and Image Processing
subject: FOS: Computer and information sciences

description: Additional file 1: Supplemental Table 1. Basic characteristics of the two datasets. Supplemental Table 2. Results of multiple linear regression. Supplemental Table 3. Analysis of variance component and SDR. Supplemental Figure 1. Distribution of the thyroid-related hormones in the Reference data set.
Neopleurophora reginensis Ament & Amorim 2013, sp. nov.
Creators: name: Ament, Danilo Cesar
name: Amorim, Dalton De Souza
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Phoridae
Neopleurophora
Neopleurophora reginensis

description: Neopleurophora reginensis, sp. nov.
(Figs. 32–35, 202, 264–265)
 Diagnosis (males). Epandrial medial process not clearly bifurcated, with two pointed apical edges; hypandrium right lobe posteriorly elongated; phallus with articulated right process bearing few teeth.
 Material examined. Holotype ♂, FRENCH GUIANA: Regina, Kaw Mt. Patawa, 4.55ºN, 52.17ºW, ii.2006, Malaise trap, 300 m, J. Cerda col. (LACM). Paratypes: BRAZIL: 1♂, Amazonas: Manaus, Reserva Ducke, Igarapé Barro Branco, 12–27.i.2005, Malaise trap, A. Henriques col. (MZUSP); 1♂, same data, but 12–22.iv.2004 (INPA); 1♂, Rondônia: Guajará-Mirim, Rio Ouro Preto, Bananal, 20–27.x.1995, Malaise trap, J.A. Rafael & A. Henriques col. (MZUSP).
 Description. Male. Body length, 2.4 mm. Head. Frons dark brown, pubescent, without median furrow. Flagellomere 1 light brown, pubescent, oval. Arista pre-apical, pubescent. Palpus yellowish-brown; one upper genal seta. Thorax. Scutum and pleural sclerites brown; anepisternum setulose dorsally, with one long seta; scutellum dark brown, with medial and posterior areas yellow. Legs light brown, except foretibia and foretarsus, yellowish-brown. Forefemur without ventral row of strong setae. Foretibia with one dorsal seta at basal fourth and an anterodorsal row of strong setae. Foremetatarsus ratio, 6.0. Midtibia with one anterodorsal and three posterodorsal setae. Hind femur swollen (height/length ratio, 0.40). Hind tibia with one anterodorsal and 4–5 posterodorsal setae (Fig. 202). Wing. Costa 0.47 of the wing length, other wing features as for the genus. Halter white, with a rounded, apical black maculation. Abdomen. Tergites dark brown, with lighter posterior band and dense microtrichia producing a silvery sheen. Hypopygium light brown (Figs. 32–35). Epandrial medial process approximately square, with two pointed apical edges. Epandrial right posterior margin with a pointed process, without subepandrial right process. Hypandrium with left lobe posteriorly elongated; right lobe narrow. Hypoproct with seven setae. Phallus (Figs. 264–265). Basiphallus without dorsal process. Membranous part of the core plate could not be observed. Epiphallus ending free, with thin, transparent scales. Ventral plate restrict to right side, short, with two apical teeth.
 Female. Unknown.
 Geographic distribution. French Guiana and northern and northwestern Brazil (States of Amazonas and Rondônia).
 Etymology. The specific epithetic refers to the type-locality, Regina, in French Guiana.
description: Published as part of Ament, Danilo Cesar & Amorim, Dalton De Souza, 2013, Taxonomic revision of the genus Neopleurophora Brown (Diptera: Phoridae), with the description of thirty seven new species, pp. 1-93 in Zootaxa 3657 (1) on pages 17-18, DOI: 10.11646/zootaxa.3657.1.1, http://zenodo.org/record/5265587
Additional file 3 of Pre-digest of unprotected DNA by Benzonase improves the representation of living skin bacteria and efficiently depletes host DNA
Creators: name: Amar, Yacine
name: Lagkouvardos, Ilias
name: Silva, Rafaela L.
name: Oluwaseun Ayodeji Ishola
name: Foesel, Bärbel U.
name: Kublik, Susanne
name: Schöler, Anne
name: Niedermeier, Sebastian
name: Bleuel, Rachela
name: Zink, Alexander
name: Neuhaus, Klaus
name: Schloter, Michael
name: Biedermann, Tilo
name: Köberle, Martin
Publisher: name: figshare
Year: 2021
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics

description: Additional file 2: Supplementary Figure S2. Benzonase digest approach efficiently depletes dead bacteria and host DNA reads with no impact on microbiota composition. a) DNA yields from a skin mock community supplemented with 3×105 PBMCs/sample and processed with different extraction methods: HA (Human blood kit), CA (conventional approach for bacteria DNA extraction) and the BDA (benzonase digest approach). b) Real-time PCR plot of human DNA reads corresponding to the mock community supplemented with PBMCs extracted using different approaches. c) The principal coordinate analysis plot (PCoA) of β-diversity shows the ability of BDA to eliminate human DNA reads from PBMCs as well as DNA from heat inactivated bacterial cells (from P. aeruginosa and P. mirabilis) and free bacterial DNA (B. simplex). BDA (benzonase-digest approach), NDA (non-benzonase-digest approach). PBMCs (human peripheral blood mono nuclear cells). Live (mock community comprising living bacteria), hi (heat inactivated P. aeruginosa and P. mirabilis), DNA (free DNA from B. simplex).
Amphisbaena mitchelli Procter, 1923: 1065
Creators: name: GANS, CARL
Publisher: name: Zenodo
Year: 2005
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Reptilia
Squamata
Amphisbaenidae
Amphisbaena
Amphisbaena mitchelli

description: Amphisbaena mitchelli Procter
 Amphisbaena mitchelli Procter, 1923: 1065. TYPE LOCALITY: Brazil; Para, Island of Marajo (10 ° 00 ̍ S, 49 ° 30 ̍ W). Holotype: BMNH 1923.11.9.90:RR1946.8.2.31.
DISCUSSION OF FORM: Gans (1963b: 3, 1964e: 192). See also Amaral (1937d), Cunha and Nascimento (1982, distribution), Duellman (1989), Elter (1981), and Hoogmoed and De Avila­Pires (1991, variation).
RANGE: Mouth of the Amazon (Tocantins?), Marajo Island, and Belem, Para, Brazil.
description: Published as part of GANS, CARL, 2005, Checklist And Bibliography Of The Amphisbaenia Of The World, pp. 1-130 in Bulletin of the American Museum of Natural History 2005 (289) on page 17, DOI: 10.1206/0003-0090(2005)289<0001:CABOTA>2.0.CO;2, http://zenodo.org/record/5361528
Spin-orbit scattering effect on critical current in SFIFS tunnel structures
Creators: name: Krivoruchko, V. N.
name: Petryuk, R. V.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: The spin-orbit scattering effect on critical current through superconductor/ferromagnet (SF) bilayers separated by an insulator (SFIFS tunnel junction) have been investigated for the case of absence of the superconducting order parameter oscillations (thin F layers). The analysis is based on a microscopic theory for proximity coupled SF bilayer for different bilayer parameters (boundary transparency, proximity effect strength, relative orientation and value of the F layers exchange field). We find that the spin-orbit scattering considerably modifies dc Josephson current in SFIFS tunnel junction. In contrast to a simple physical picture, the reduction of the exchange field effects is nonlinear in character getting its maximum in the field's region where the critical current enhancement or the transition to the π-state take place. Hence, for understanding the various experimental results on tunnel structures with thin F layers, the coupled effects of the exchange interaction and spin-orbit scattering must be considered.
description: 10 pages, 4 Postscript figures
Supplementary material from The conundrum of species delimitation: a genomic perspective on a mitogenetically super-variable butterfly
Creators: name: Dincă, Vlad
name: Lee, Kyung Min
name: Vila, Roger
name: Mutanen, Marko
Publisher: name: The Royal Society
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 60301 Animal Systematics and Taxonomy
subject: 60310 Plant Systematics and Taxonomy
subject: 60408 Genomics

description: Supplementary material and methods, figures and tables
Investigating the Semiannual Oscillation on Mars using data assimilation
Creators: name: Ruan, Tao
name: Lewis, Neil T.
name: Lewis, Stephen R.
name: Montabone, Luca
name: Read, Peter L.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: Atmospheric and Oceanic Physics (physics.ao-ph)
subject: FOS: Physical sciences

description: A Martian semiannual oscillation (SAO), similar to that in the Earth's tropical stratosphere, is evident in the Mars Analysis Correction Data Assimilation reanalysis dataset (MACDA) version 1.0, not only in the tropics, but also extending to higher latitudes. Unlike on Earth, the Martian SAO is found not always to reverse its zonal wind direction, but only manifests itself as a deceleration of the dominant wind at certain pressure levels and latitudes. Singular System Analysis (SSA) is further applied on the zonal-mean zonal wind in different latitude bands to reveal the characteristics of SAO phenomena at different latitudes. The second pair of principal components (PCs) is usually dominated by a SAO signal, though the SAO signal can be strong enough to manifest itself also in the first pair of PCs. An analysis of terms in the Transformed Eulerian Mean equation (TEM) is applied in the tropics to further elucidate the forcing processes driving the tendency of the zonal-mean zonal wind. The zonal-mean meridional advection is found to correlate strongly with the observed oscillations of zonal-mean zonal wind, and supplies the majority of the westward (retrograde) forcing in the SAO cycle. The forcing due to various non-zonal waves supplies forcing to the zonal-mean zonal wind that is nearly the opposite of the forcing due to meridional advection above ~3 Pa altitude, but it also partly supports the SAO between 40 Pa and 3 Pa. Some distinctive features occurring during the period of the Mars year (MY) 25 global-scale dust storm (GDS) are also notable in our diagnostic results with substantially stronger values of eastward and westward momentum in the second half of MY 25 and stronger forcing due to vertical advection, transient waves and thermal tides.
description: Accepted for publication in Icarus. 20 pages, 5 figures
The zeros of the QCD partition function
Creators: name: Jackson, A. D.
name: Lang, C. B.
name: Oswald, M.
name: Splittorff, K.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Condensed Matter (cond-mat)
subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: We establish a relationship between the zeros of the partition function in the complex mass plane and the spectral properties of the Dirac operator in QCD. This relation is derived within the context of chiral Random Matrix Theory and applies to QCD when chiral symmetry is spontaneously broken. Further, we introduce and examine the concept of normal modes in chiral spectra. Using this formalism we study the consequences of a finite Thouless energy for the zeros of the partition function. This leads to the demonstration that certain features of the QCD partition function are universal.
description: 13 pages
Amphisbaena occidentalis Cope
Creators: name: GANS, CARL
Publisher: name: Zenodo
Year: 2005
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Reptilia
Squamata
Amphisbaenidae
Amphisbaena
Amphisbaena occidentalis

description: Amphisbaena occidentalis Cope
 Amphisbaena occidentalis Cope, 1876: 176. TYPE LOCALITY: ‘‘Valley of Jequetepeque,’’ north coast of Peru (07 ° 22 ̍ S, 79 ° 34 ̍ W). Syntypes: ANSP 11355–11358.
DISCUSSION OF FORM: Gans (1961d: 7). See also Boulenger (1890a), Cope (1876, 1892a), and Stejneger (1911).
RANGE: Coastal plain of Peru, from Chimbote to Chiclay (CG 2767, plus three in a private collection in Lima).
description: Published as part of GANS, CARL, 2005, Checklist And Bibliography Of The Amphisbaenia Of The World, pp. 1-130 in Bulletin of the American Museum of Natural History 2005 (289) on page 18, DOI: 10.1206/0003-0090(2005)289<0001:CABOTA>2.0.CO;2, http://zenodo.org/record/5361528
Integrated polarizers based on graphene oxide in waveguides and ring resonators
Creators: name: Wu, Jiayang
name: Yang, Yunyi
name: Qu, Yang
name: Xu, Xingyuan
name: Liang, Yao
name: Chu, Sai T.
name: Little, Brent E.
name: Morandotti, Roberto
name: Jia, Baohua
name: Moss, David J.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Optics (physics.optics)
subject: Applied Physics (physics.app-ph)
subject: FOS: Physical sciences

description: Integrated waveguide polarizers and polarization-selective micro-ring resonators (MRRs) incorporated with graphene oxide (GO) films are experimentally demonstrated. CMOS-compatible doped silica waveguides and MRRs with both uniformly coated and patterned GO films are fabricated based on a large-area, transfer-free, layer-by-layer GO coating method that yields precise control of the film thickness. Photolithography and lift-off processes are used to achieve photolithographic patterning of GO films with precise control of the placement and coating length. Detailed measurements are performed to characterize the performance of the devices versus GO film thickness and coating length as a function of polarization, wavelength and power. A high polarization dependent loss of ~53.8 dB is achieved for the waveguide coated with 2-mm-long patterned GO films. It is found that intrinsic film material loss anisotropy dominates the performance for less than 20 layers whereas polarization dependent mode overlap dominates for thicker layers. For the MRRs, the GO coating length is reduced to 50 microns, yielding a ~ 8.3-dB polarization extinction ratio between TE and TM resonances. These results offer interesting physical insights and trends of the layered GO films and demonstrate the effectiveness of introducing GO films into photonic integrated devices to realize high-performance polarization selective components.
description: 15 pages, 8 figures, 54 references
Supplementary Figures from Ecological constraints associated with genome size across salamander lineages
Creators: name: Gavia Lertzman-Lepofsky
name: Mooers, Arne Ø.
name: Greenberg, Dan A.
Publisher: name: The Royal Society
Year: 2019
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology

description: This file contains supplementary figures and figure captions
Soliton model for proton conductivity in Langmuir films
Creators: name: Bazeia, D.
name: Leite, V. B. P.
name: Lima, B. H. B.
name: Moraes, F.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: Soft Condensed Matter (cond-mat.soft)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: A soliton model for proton conductivity in Langmuir films is presented. The model contains three real scalar fields describing the hydrogen involved in the conduction, the hydrophilic head of the Langmuir film, and the water. Soliton solutions that describe proton motion along the hydrogen bonds are found. Under compression of the film, the distance between the minima of the proton potential and the strength of the hydrogen bonds between the film molecule and the water are changed. Such changes increase the probability of soliton creation. The model presented allows proton conductivity data in Langmuir films to be explained.
description: Revtex, 07 pages, 2 eps figures, to be published in Chem. Phys. Lett
Additional file 4 of Pre-digest of unprotected DNA by Benzonase improves the representation of living skin bacteria and efficiently depletes host DNA
Creators: name: Amar, Yacine
name: Lagkouvardos, Ilias
name: Silva, Rafaela L.
name: Oluwaseun Ayodeji Ishola
name: Foesel, Bärbel U.
name: Kublik, Susanne
name: Schöler, Anne
name: Niedermeier, Sebastian
name: Bleuel, Rachela
name: Zink, Alexander
name: Neuhaus, Klaus
name: Schloter, Michael
name: Biedermann, Tilo
name: Köberle, Martin
Publisher: name: figshare
Year: 2021
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics

description: Additional file 3: Supplementary Figure S3. Benzonase digest approach efficiently depletes dead bacteria and host DNA from metagenomics reads. a) Metagenomics read counts from skin mock community samples (hi, DNA), supplemented or not with 105 PBMCs and processed either with BDA or NDA. b) Human and bacteria metagenomics read counts in mock community samples (hi, DNA). c) Relative abundance of OTUs detected in metagenomics reads. d) Relative abundance of OTUs obtained from skin mock community supplemented or not with human PBMCs. The taxonomy analysis based on metagenomics data has been performed using MetaPhlAn 3.0 tool. BDA (Benzonase-digest approach), NDA (Non-Benzonase-digest approach). PBMCs (human peripheral blood mono nuclear cells). OTUs (Operational taxonomic units), hi, DNA (Skin mock community with heat inactivated P. aeruginosa and P. mirabilis and free bacterial DNA from B. simplex).
Entangled graphs: Bipartite entanglement in multi-qubit systems
Creators: name: Plesch, Martin
name: Buzek, Vladimir
Publisher: name: arXiv
Year: 2002
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Quantum entanglement in multipartite systems cannot be shared freely. In order to illuminate basic rules of entanglement sharing between qubits we introduce a concept of an entangled structure (graph) such that each qubit of a multipartite system is associated with a point (vertex) while a bi-partite entanglement between two specific qubits is represented by a connection (edge) between these points. We prove that any such entangled structure can be associated with a pure state of a multi-qubit system. Moreover, we show that a pure state corresponding to a given entangled structure is a superposition of vectors from a subspace of the $2^N$-dimensional Hilbert space, whose dimension grows linearly with the number of entangled pairs.
description: 6 revtex pages, 2 figures, to appear in Phys. Rev. A