cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1 of The influence of thermal and hypoxia induced habitat compression on walleye (Sander vitreus) movements in a temperate lake
Creators: name: Brooks, J. L.
name: Lédée, E. J. I.
name: Larocque, S. M.
name: Cooke, S. J.
name: Brown, E.
name: Midwood, J. D.
Publisher: name: figshare
Year: 2025
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Supplementary file 1.
Sinodendron cylindricum
Creators: name: Barševskis, Arvīds
name: Janovska, Marina
name: Aksjuta, Kristīna
name: Cibuļskis, Raimonds
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lucanidae
Sinodendron
Sinodendron cylindricum

description: 53. Sinodendron cylindricum (Linnaeus, 1758)
– Aizkraukle distr., protected area „ Aizkraukles purvs un meži”, 01. VII 2008. (1, A.Bu.), 06. VIII 2008. (1, A.Bu.); Daugavpils distr., Bebrene, 56 o 03’13”N, 26 o 07’02”E, 07. V 2006. (15, E.R.), Eglaine, „Saliņas”, 12. VII 2008. (1, M.J.), Nature park „Silene”, protected area „Ilgas”, VI 2006. (2, R.M.), 27. V – 01. VI 2009. (1, R.C.), protected area „Ilgas”, clearing, near maple, VI 2005. (8, A.B.), Šedere, Šarlote, 16. IV 2008. (1, K.A.); Jēkabpils distr., Dunava, 10.-18. VI 2006. (1, K. B.), 18.-22. VI 2006. (1, K.B.), 06.-09. VI 2007. (1, K.B.), 10.-19. VI 2007. (2, K.B.), 04.-20. VI 2008. (1, K.B.), 02. VII 2008. (1, A.B.), 31. V 2009. (1, A.B.), 01.-07. VI 2009. (1, K.B.), 01.-08. VI 2009. (1, K.B.), 11.-22. VI 2009. (1, K.B.), 08.-09. VIII 2009. (1, A.B.), Dviete, Dviete – Tadenava forest, clearing, 10. VIII 2008. (1, A.B.), Tadenava, Dviete – Tadenava forest, pheromone trap, VII 2009. (1, A.B.); Krāslava distr., ~ 1.3 km NNW Skaista, Zukulišķi, Nature park „Dridža ezers”, 14. VII 2008. (1, R.C.), Šķeltova, „Barševski”, 03. VI 2008. (1, A.B.), 28. VI 2008. (1, A.B.), VII 2009. (1, A.B.); Preiļi distr., Jersika, „Kurpnieki”, 22.-24. VI 2009. (1, A.B.), Preiļi, 17. XI 2008. (1, O.V.); Ogre distr., Jumprava, „Velna dobe”, 10. VII 2008. (1, A.B.); Talsi distr., protected area „Kaļķupes ieleja”, window trap, VI – 13. VII 2009. (6, A.B.; 2, A.B., U.V.), Slītere National park, VII 2002. (1, A.B.), Slītere National park, „Zilie kalni”, 21. IX 2009. (1, A.P.); Ventspils distr., Moricsala Nature reserve, VI (4, A.B.), 09. VII 2004. (1, A.B.), 23. VIII 2008. (2, A.B.), Moricsala Nature reserve, 57 o 11’31”N, 022 o 08’03”E, 11. VII 2005. (1, U.V.), Moricsala Nature reserve, 55 o 11’40”N, 022 o 08’10”E, 11. VII 2005. (2, U.V.); Moricsala Nature reserve, window trap, 23. VIII 2008. (3, A.B., A.S.), Moricsala Nature reserve, window trap, Sorbus aucuparia, 04. VI – 14. VII 2009. (2, A.B.).
description: Published as part of Barševskis, Arvīds, Janovska, Marina, Aksjuta, Kristīna & Cibuļskis, Raimonds, 2009, Faunistic Records Of The Beetles (Hexapoda: Coleoptera) In Latvia. 3., pp. 139-159 in Acta Biologica Universitatis Daugavpiliensis 9 (2) on page 144, DOI: 10.5281/zenodo.10602165
Additional file 8: Figure S5. of Maize network analysis revealed gene modules involved in development, nutrients utilization, metabolism, and stress response
Creators: name: Shisong Ma
name: Zehong Ding
name: Pinghua Li
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: A module for wax biosynthesis. Figure S6. A module for heat-shock stress response. Figure S7. A module for ER-stress response. Figure S8. A module for stress response to fungus. Figure S9. Comparison between the non-transformed FPKM network and the log-transformation-based network. Both networks were evaluated via the EGAD package [99] in R regarding their capacities to connect genes with shared GO terms. For each GO term, the maize genes with that GO were considered as a gene set, and an AUROC value was calculated for each network using the EGAD package. A higher AUROC value indicates genes within that gene set are more likely to have each other as neighbors, and thus a better performance of the network. The histogram shows the overall distribution of the AUROC values for 1728 GO terms calculated for the non-transformed FPKM network (green bar) and for the log-transformation-based network (transparent bar with black border). The log-transformation-based network has more GO terms with higher AUROC values, thus it performs better than the other network. (PDF 795 kb)
Additional file 2 of The influence of thermal and hypoxia induced habitat compression on walleye (Sander vitreus) movements in a temperate lake
Creators: name: Brooks, J. L.
name: Lédée, E. J. I.
name: Larocque, S. M.
name: Cooke, S. J.
name: Brown, E.
name: Midwood, J. D.
Publisher: name: figshare
Year: 2025
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Supplementary file 2.
Hexocycnidolon unoculum Bates 1870
Creators: name: Monné, Miguel A.
name: Monné, Marcela L.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Hexocycnidolon
Hexocycnidolon unoculum

description: 188. Hexocycnidolon vulcanoi Martins, 1960b: 27, fig. 1
Holotype male: Peru, Junín: Satipo, 1938, A. Maller.
Junior synonym of Hexocycnidolon unoculum (Bates, 1870)
description: Published as part of Monné, Miguel A. & Monné, Marcela L., 2016, Checklist of Cerambycidae (Coleoptera) primary types of the Museu Nacional, Rio de Janeiro, Brazil, with a brief history of the collection, pp. 1-90 in Zootaxa 4110 (1) on page 19, DOI: 10.11646/zootaxa.4110.1.1, http://zenodo.org/record/255316
Hexoplon illuminum Napp & Martins 1985
Creators: name: Monné, Miguel A.
name: Monné, Marcela L.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Hexoplon
Hexoplon illuminum

description: 189. Hexoplon illuminum Napp & Martins, 1985a: 124, fig. 9
Holotype female: Brazil, Rondônia: Ariquemes, VIII.1980, B. Silva.
description: Published as part of Monné, Miguel A. & Monné, Marcela L., 2016, Checklist of Cerambycidae (Coleoptera) primary types of the Museu Nacional, Rio de Janeiro, Brazil, with a brief history of the collection, pp. 1-90 in Zootaxa 4110 (1) on page 19, DOI: 10.11646/zootaxa.4110.1.1, http://zenodo.org/record/255316
Additional file 3 of The influence of thermal and hypoxia induced habitat compression on walleye (Sander vitreus) movements in a temperate lake
Creators: name: Brooks, J. L.
name: Lédée, E. J. I.
name: Larocque, S. M.
name: Cooke, S. J.
name: Brown, E.
name: Midwood, J. D.
Publisher: name: figshare
Year: 2025
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Supplementary file 3.
Additional file 5: Figure S1. of Phlebotomine sand fly survey in the focus of leishmaniasis in Madrid, Spain (2012–2014): seasonal dynamics, Leishmania infantum infection rates and blood meal preferences
Creators: name: González, Estela
name: Jiménez, Maribel
name: Hernández, Sonia
name: Martín-Martín, Inés
name: Molina, Ricardo
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology
subject: Computational Biology

description: Alignment of ITS sequences of Leishmania infantum isolates from 2012, 2013 and 2014 and strains with different ITS types of L. infantum retrieved in the Genbank: type Lombardi (AJ000295), type A (AJ634341), type B (AJ000288), type A/B (AJ634355), type E (AJ634361) and type F (AJ634370). (PDF 1192 kb)
Additional file 5 of The influence of thermal and hypoxia induced habitat compression on walleye (Sander vitreus) movements in a temperate lake
Creators: name: Brooks, J. L.
name: Lédée, E. J. I.
name: Larocque, S. M.
name: Cooke, S. J.
name: Brown, E.
name: Midwood, J. D.
Publisher: name: figshare
Year: 2025
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Supplementary file 5.
Additional file 4 of The influence of thermal and hypoxia induced habitat compression on walleye (Sander vitreus) movements in a temperate lake
Creators: name: Brooks, J. L.
name: Lédée, E. J. I.
name: Larocque, S. M.
name: Cooke, S. J.
name: Brown, E.
name: Midwood, J. D.
Publisher: name: figshare
Year: 2025
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Supplementary file 4.
Dorcus parallelipipedus
Creators: name: Barševskis, Arvīds
name: Janovska, Marina
name: Aksjuta, Kristīna
name: Cibuļskis, Raimonds
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lucanidae
Dorcus
Dorcus parallelipipedus

description: 54. Dorcus parallelipipedus (Linnaeus, 1758)
- Daugavpils distr., Nature park „Silene”, protected area „Ilgas”, 27. V – 01. VI 2009. (1, J.I.), Červonka, 29. VI 2008. (1, N.M.); Jēkabpils distr., Dunava, 31. V 2009. (2, A.B.), 01.-07.VI 2009. (1, K.B.), 01. XI 2009. (1, A.B.).
description: Published as part of Barševskis, Arvīds, Janovska, Marina, Aksjuta, Kristīna & Cibuļskis, Raimonds, 2009, Faunistic Records Of The Beetles (Hexapoda: Coleoptera) In Latvia. 3., pp. 139-159 in Acta Biologica Universitatis Daugavpiliensis 9 (2) on page 144, DOI: 10.5281/zenodo.10602165
Hexoplon scutellare Napp & Martins 1985
Creators: name: Monné, Miguel A.
name: Monné, Marcela L.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Hexoplon
Hexoplon scutellare

description: 190. Hexoplon scutellare Napp & Martins, 1985a: 123, fig. 8
Holotype male: Brazil, Bahia: Encruzilhada (Motel da Divisa, km 965 rodovia Rio-Bahia, 960 m), II.1973, L. Castro.
description: Published as part of Monné, Miguel A. & Monné, Marcela L., 2016, Checklist of Cerambycidae (Coleoptera) primary types of the Museu Nacional, Rio de Janeiro, Brazil, with a brief history of the collection, pp. 1-90 in Zootaxa 4110 (1) on page 19, DOI: 10.11646/zootaxa.4110.1.1, http://zenodo.org/record/255316
Antibacterial ent-trachyloban-19-oic acid and other constituents from Croton kinondoensis G.W. Hu, Ngumbau & Q.F. Wang
Creators: name: Diri, Mona
name: Cruz, Cristina D.
name: Mas-Claret, Eduard
name: Sadgrove, Nicholas
name: Prescott, Thomas A. K.
name: Langat, Moses K.
name: Tammela, Päivi
name: Schwikkard, Sianne L.
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Phytochemical analysis of the twigs and leaves of Croton kinondoensis, endemic to Kenya, yielded known compounds 3-(3′,4′-dimethoxyphenyl)-prop-1-ene (1), 3-(3′,4′-dimethoxyphenyl)-propenal (2), lupeol (3) and ent-trachyloban-19-oic acid (4), and a tentatively new ent-clerodane diterpenoid, crotokinondoenolide (5). ent-Trachy­loban-19-oic acid (4) showed good activity against a panel of drug-resistant strains of Staphylococcus aureus and Enterococcus spp with MIC ­values of 25 µg/mL.
Trox sabulosus
Creators: name: Barševskis, Arvīds
name: Janovska, Marina
name: Aksjuta, Kristīna
name: Cibuļskis, Raimonds
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Trogidae
Trox
Trox sabulosus

description: 55. Trox sabulosus (Linnaeus, 1758) -
Krāslava distr., Ūdrīši, „Zapoļniki”, 08.-10. V 2009. (1, M.J.).
description: Published as part of Barševskis, Arvīds, Janovska, Marina, Aksjuta, Kristīna & Cibuļskis, Raimonds, 2009, Faunistic Records Of The Beetles (Hexapoda: Coleoptera) In Latvia. 3., pp. 139-159 in Acta Biologica Universitatis Daugavpiliensis 9 (2) on page 144, DOI: 10.5281/zenodo.10602165
Additional file 6 of The influence of thermal and hypoxia induced habitat compression on walleye (Sander vitreus) movements in a temperate lake
Creators: name: Brooks, J. L.
name: Lédée, E. J. I.
name: Larocque, S. M.
name: Cooke, S. J.
name: Brown, E.
name: Midwood, J. D.
Publisher: name: figshare
Year: 2025
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Supplementary file 6.
Additional file 7 of The influence of thermal and hypoxia induced habitat compression on walleye (Sander vitreus) movements in a temperate lake
Creators: name: Brooks, J. L.
name: Lédée, E. J. I.
name: Larocque, S. M.
name: Cooke, S. J.
name: Brown, E.
name: Midwood, J. D.
Publisher: name: figshare
Year: 2025
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Supplementary file 7.
Hexoplon speciosum subsp. ferruginosum Martins 1959
Creators: name: Monné, Miguel A.
name: Monné, Marcela L.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Hexoplon
Hexoplon speciosum
Hexoplon speciosum ferruginosum martins, 1959

description: 191. Hexoplon speciosum ferruginosum Martins, 1959
Hexoplon ferruginosum Martins, 1959: 347, fig. 4
Holotype male: Brazil, São Paulo: Marília, XI.1945, H. Zellibor.
description: Published as part of Monné, Miguel A. & Monné, Marcela L., 2016, Checklist of Cerambycidae (Coleoptera) primary types of the Museu Nacional, Rio de Janeiro, Brazil, with a brief history of the collection, pp. 1-90 in Zootaxa 4110 (1) on page 19, DOI: 10.11646/zootaxa.4110.1.1, http://zenodo.org/record/255316
An Optimization Framework for Kinetic Model Building from Concentration and Spectroscopic Data
Creators: name: Krumpolc, Thomas J.
Publisher: name: Carnegie Mellon University
Year: 2024
Subjects: Chemical Engineering not elsewhere classified

description:  This dissertation deals with the development of an optimization framework for kinetic model building from experimentally measured concentration and spectroscopic data. We develop mechanistic models based on first-principles and use a statistical criteria for model discrimination when more than one model is proposed. While many predictive model building methods exist using data-driven approaches, mechanistic models provide a physical understanding of resulting estimates and allow the investigator to elicit additional information about the underlying structure of the system. Tightly coupled with kinetic model building is parameter estimation, where degrees of freedom are related to unknown reaction rate parameters and other sources of measurement uncertainty such as unknown initial conditions and spectroscopic absorbance. Accurate estimation methods which maximize the information from experimentally collected data are imperative, but detailed physics-based models with multiple datasets present a computational challenges as the problem size and complexity increases. In this work, we present strategies to address these common obstacles. The model building framework is based on simultaneous full-discretization approaches and interior-point nonlinear programming (NLP) solvers which exploit problem structure and exact second derivatives resulting in favorable computational efficiency. 
First, we review relevant nonlinear optimization theory, which motivates the use of interior-point algorithms for kinetic model building. In addition, we discussion advantages and disadvantages of different approaches for parameter estimation from spectroscopic data, with special emphasis on the advantages of the simultaneous solution strategy. To present the flexibility and robustness of this framework, we investigate various reaction networks with real-world experimentally measured data. Chapter 3 describes an application of nonlinear mixed-effects models, an alternative modeling technique commonly used in pharmacometrics to capture batch-to-batch variation between experiments, to a single response hydrogenation reaction in a trickle-bed batch reactor system. Chapters 4, 5, and 6 examine different applications of our kinetic model building framework to obtain accurate predictions of rate constants, concentration profiles, and pure component absorbance profiles from in situ spectroscopic data. In Chapter 4 and Chapter 6, we develop population balance models for ring-opening polymerization reactions. Chapter 5 presents a challenging case study where temperature dependence and hydrogen-bonding effects play an important role. All modeling strategies use the state-of-the-art NLP solver IPOPT and the algebraic modeling language Pyomo.
Additional file 8: Figure S5. of Maize network analysis revealed gene modules involved in development, nutrients utilization, metabolism, and stress response
Creators: name: Shisong Ma
name: Zehong Ding
name: Pinghua Li
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences

description: A module for wax biosynthesis. Figure S6. A module for heat-shock stress response. Figure S7. A module for ER-stress response. Figure S8. A module for stress response to fungus. Figure S9. Comparison between the non-transformed FPKM network and the log-transformation-based network. Both networks were evaluated via the EGAD package [99] in R regarding their capacities to connect genes with shared GO terms. For each GO term, the maize genes with that GO were considered as a gene set, and an AUROC value was calculated for each network using the EGAD package. A higher AUROC value indicates genes within that gene set are more likely to have each other as neighbors, and thus a better performance of the network. The histogram shows the overall distribution of the AUROC values for 1728 GO terms calculated for the non-transformed FPKM network (green bar) and for the log-transformation-based network (transparent bar with black border). The log-transformation-based network has more GO terms with higher AUROC values, thus it performs better than the other network. (PDF 795 kb)
Isostenygra monnei Martins & Galileo 1999
Creators: name: Monné, Miguel A.
name: Monné, Marcela L.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Isostenygra
Isostenygra monnei

description: 192. Isostenygra monnei Martins & Galileo, 1999b: 317, figs. 1–5
Holotype male: Brazil, Amazonas: Tabatinga, VII.1978, B. Silva.
description: Published as part of Monné, Miguel A. & Monné, Marcela L., 2016, Checklist of Cerambycidae (Coleoptera) primary types of the Museu Nacional, Rio de Janeiro, Brazil, with a brief history of the collection, pp. 1-90 in Zootaxa 4110 (1) on page 19, DOI: 10.11646/zootaxa.4110.1.1, http://zenodo.org/record/255316
MOESM1 of Occurrence of cardiorespiratory diseases and impact on lifespan in Swedish Irish Wolfhounds: a retrospective questionnaire-based study
Creators: name: Orleifson, Lovisa
name: Ljungvall, Ingrid
name: Höglund, Katja
name: Häggström, Jens
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Computational Biology

description: Additional file 1: Questionnaire. A translated English version of the questionnaire distributed to owners of purebred Irish Wolfhounds born during 2006–2008.
Additional file 9 of The influence of thermal and hypoxia induced habitat compression on walleye (Sander vitreus) movements in a temperate lake
Creators: name: Brooks, J. L.
name: Lédée, E. J. I.
name: Larocque, S. M.
name: Cooke, S. J.
name: Brown, E.
name: Midwood, J. D.
Publisher: name: figshare
Year: 2025
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Supplementary file 9.
Additional file 1: Supplementary figures. of Monoamine oxidase B is elevated in Alzheimer disease neurons, is associated with γ-secretase and regulates neuronal amyloid β-peptide levels
Creators: name: Schedin-Weiss, Sophia
name: Inoue, Mitsuhiro
name: Hromadkova, Lenka
name: Teranishi, Yasuhiro
name: Yamamoto, Natsuko
name: Wiehager, Birgitta
name: Bogdanovic, Nenad
name: Winblad, Bengt
name: Sandebring-Matton, Anna
name: Frykman, Susanne
name: Tjernberg, Lars
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Mental Health

description: Figure S1. MAO-B antibody validation, precipitation and expression experiments. Figure S2. Western blot (WB) of postmortem AD and control human brain homogenate with MAO-B antibody. Figure S3. Validation of the Aβ42-specific antibody G2-11 by immunocytochemistry. Figure S4. MAO-B and Ab42 quantification in single cells from MAO-B silenced cortex neurons. Figure S5. Treatment of primary cortical neurons with fluorescently labeled siRNA. (PDF 1472 kb)
Trypocopris (Geotrupes) vernalis
Creators: name: Barševskis, Arvīds
name: Janovska, Marina
name: Aksjuta, Kristīna
name: Cibuļskis, Raimonds
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Geotrupidae
Trypocopris
Trypocopris vernalis

description: 56. Trypocopris (Geotrupes) vernalis (Linnaeus, 1758)
- Daugavpils distr., Nature park „Silene”, 17.-20.VI 2008. (1, J.S., V.K.), Nature park „Silene”, protected area „Ilgas”, 26.-30. VI 2009. (1, M.Z.).
description: Published as part of Barševskis, Arvīds, Janovska, Marina, Aksjuta, Kristīna & Cibuļskis, Raimonds, 2009, Faunistic Records Of The Beetles (Hexapoda: Coleoptera) In Latvia. 3., pp. 139-159 in Acta Biologica Universitatis Daugavpiliensis 9 (2) on page 144, DOI: 10.5281/zenodo.10602165
Additional file 1: Supplementary figures. of Monoamine oxidase B is elevated in Alzheimer disease neurons, is associated with γ-secretase and regulates neuronal amyloid β-peptide levels
Creators: name: Schedin-Weiss, Sophia
name: Inoue, Mitsuhiro
name: Hromadkova, Lenka
name: Teranishi, Yasuhiro
name: Yamamoto, Natsuko
name: Wiehager, Birgitta
name: Bogdanovic, Nenad
name: Winblad, Bengt
name: Sandebring-Matton, Anna
name: Frykman, Susanne
name: Tjernberg, Lars
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Figure S1. MAO-B antibody validation, precipitation and expression experiments. Figure S2. Western blot (WB) of postmortem AD and control human brain homogenate with MAO-B antibody. Figure S3. Validation of the Aβ42-specific antibody G2-11 by immunocytochemistry. Figure S4. MAO-B and Ab42 quantification in single cells from MAO-B silenced cortex neurons. Figure S5. Treatment of primary cortical neurons with fluorescently labeled siRNA. (PDF 1472 kb)
Notosphaeridion vestitum Martins 1960
Creators: name: Monné, Miguel A.
name: Monné, Marcela L.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Notosphaeridion
Notosphaeridion vestitum

description: 193. Notosphaeridion vestitum Martins, 1960f: 154, figs. 1, 2
Holotype male: Brazil, Paraíba: Soledade (Juazeirinho), 27.III.1956. A.G. d’Araujo e Silva.
description: Published as part of Monné, Miguel A. & Monné, Marcela L., 2016, Checklist of Cerambycidae (Coleoptera) primary types of the Museu Nacional, Rio de Janeiro, Brazil, with a brief history of the collection, pp. 1-90 in Zootaxa 4110 (1) on page 19, DOI: 10.11646/zootaxa.4110.1.1, http://zenodo.org/record/255316
Argiolestidae Kalkman & Theischinger 2013
Creators: name: Grand, Daniel
name: Marinov, Milen
name: Jourdan, Herve
name: Cook, Carl
name: Rouys, Sophie
name: Mille, Christian
name: Theuerkauf, Jörn
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Odonata
Argiolestidae

description: Family Argiolestidae Kalkman & Theischinger, 2013
Argiolestidae were raised to family level by Kalkmann & Theischinger (2013) and include all zygopteran genera in which the gills of the larvae are flat and held in a horizontal plane. The family is divided into two subfamilies based on characters of the penis in the adult male, Argiolestinae and Podolestinae, with the Argiolestinae only found in Australasia and Sulawesi. Podolestinae are represented in New Caledonia by four genera, which are all endemic to the archipelago.
description: Published as part of Grand, Daniel, Marinov, Milen, Jourdan, Herve, Cook, Carl, Rouys, Sophie, Mille, Christian & Theuerkauf, Jörn, 2019, Distribution, habitats, phenology and conservation of New Caledonian Odonata, pp. 1-112 in Zootaxa 4640 (1) on pages 10-11, DOI: 10.11646/zootaxa.4640.1, http://zenodo.org/record/3342242
Psammodius sulcicollis
Creators: name: Barševskis, Arvīds
name: Janovska, Marina
name: Aksjuta, Kristīna
name: Cibuļskis, Raimonds
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Psammodius
Psammodius sulcicollis

description: 57. Psammodius sulcicollis (Illiger, 1802) -
Ventspils distr., Moricsala Nature reserve, window trap, 04. VI – 14. VII 2009. (1, A.B.).
description: Published as part of Barševskis, Arvīds, Janovska, Marina, Aksjuta, Kristīna & Cibuļskis, Raimonds, 2009, Faunistic Records Of The Beetles (Hexapoda: Coleoptera) In Latvia. 3., pp. 139-159 in Acta Biologica Universitatis Daugavpiliensis 9 (2) on page 144, DOI: 10.5281/zenodo.10602165
title: A Computer-Assisted Approach to Lexical Borrowing in Northeast Caucasian Languages
Creators: name: Wren-Hardin, Bonnie Eleanor
Publisher: name: University of Kentucky Libraries
Year: 2024
Subjects: classificationCode: 6.2
subject: FOS: Languages and literature

description: The disambiguation of loanwords and cognates can be a challenge, especially in areas where there has been intense language contact over an extended period of time, when the contact is between genetically related languages, and when the number of languages involved is large Over the past several decades, more and more computational approaches to automatic cognate and borrowing detection have been created in an attempt to ease the load of examining hundreds to thousands of individual lexemes, as well as determine language family relationships with allegedly greater accuracy. While these methods are not perfect and cannot replace the knowledge or skillset of a linguist,, this paper seeks to apply a computer-assisted, as opposed to purely computational, approach to lexical borrowing detection to three Northeast Caucasian languages spoken in a cluster of villages in Dagestan: Avar, Lak, and Archi. In this thesis, I utilize computational methods for cognate detection as a starting point, as well as a lexical distribution approach to borrowing, followed by qualitative methods for determining loanwords from borrowings as applied to the output of the computational methods.
description: 2024 Bonnie Eleanor Wren-Hardin
Ophtalmoplon nigricorne Napp & Martins 1985
Creators: name: Monné, Miguel A.
name: Monné, Marcela L.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Ophtalmoplon
Ophtalmoplon nigricorne

description: 194. Ophtalmoplon nigricorne Napp & Martins, 1985a: 118, fig. 3
Holotype male: Brazil, Bahia: Poções, XI.1973, C.A.C. Seabra & O. Roppa.
description: Published as part of Monné, Miguel A. & Monné, Marcela L., 2016, Checklist of Cerambycidae (Coleoptera) primary types of the Museu Nacional, Rio de Janeiro, Brazil, with a brief history of the collection, pp. 1-90 in Zootaxa 4110 (1) on page 19, DOI: 10.11646/zootaxa.4110.1.1, http://zenodo.org/record/255316
Eoargiolestes ochraceus
Creators: name: Grand, Daniel
name: Marinov, Milen
name: Jourdan, Herve
name: Cook, Carl
name: Rouys, Sophie
name: Mille, Christian
name: Theuerkauf, Jörn
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Odonata
Argiolestidae
Eoargiolestes
Eoargiolestes ochraceus

description: Eoargiolestes ochraceus (Montrouzier, 1864)
(Fig. 9)
Sympecma ochracea Montrouzier, 1864: 247; Argiolestes rouxi Ris, 1915, Argiolestes ochraceus (Montrouzier, 1864).
Distribution (Fig. 10). Genus endemic to Grande Terre. More than 30 localities are known from all over the island.
Habitats. Eoargiolestes ochraceus prefers creeks with sunny reaches, on moderate slopes and with a rocky bed. It is rarer in the shaded upper parts of mountain creeks.
Biology and behaviour. Larvae were described by Lieftinck (1976). Exuviae are found very close to the water, generally less than 20 cm from the water surface. Males are territorial and remain perched for long periods on rocks near the water surface. They drive off other males venturing into their territory.
Status. This species is widely distributed, with large populations. The main threat to its survival is the pollution of creeks and rivers. We consider this species to be LC.
description: Published as part of Grand, Daniel, Marinov, Milen, Jourdan, Herve, Cook, Carl, Rouys, Sophie, Mille, Christian & Theuerkauf, Jörn, 2019, Distribution, habitats, phenology and conservation of New Caledonian Odonata, pp. 1-112 in Zootaxa 4640 (1) on page 17, DOI: 10.11646/zootaxa.4640.1, http://zenodo.org/record/3342242
Maladera holosericea
Creators: name: Barševskis, Arvīds
name: Janovska, Marina
name: Aksjuta, Kristīna
name: Cibuļskis, Raimonds
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Maladera
Maladera holosericea

description: 58. Maladera holosericea (Scopoli, 1772) -
Daugavpils distr., Nature park „Silene”, protected area „Ilgas”, IV 2002. (1, A.B.).
description: Published as part of Barševskis, Arvīds, Janovska, Marina, Aksjuta, Kristīna & Cibuļskis, Raimonds, 2009, Faunistic Records Of The Beetles (Hexapoda: Coleoptera) In Latvia. 3., pp. 139-159 in Acta Biologica Universitatis Daugavpiliensis 9 (2) on page 144, DOI: 10.5281/zenodo.10602165
Pseudoplon rasile Napp & Martins 1985
Creators: name: Monné, Miguel A.
name: Monné, Marcela L.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Pseudoplon
Pseudoplon rasile

description: 195. Pseudoplon rasile Napp & Martins, 1985a: 116, fig. 2
Holotype female: Brazil, Rio Grande do Norte: Macaíba, 8.VI.1951, L. Rodolfo.
description: Published as part of Monné, Miguel A. & Monné, Marcela L., 2016, Checklist of Cerambycidae (Coleoptera) primary types of the Museu Nacional, Rio de Janeiro, Brazil, with a brief history of the collection, pp. 1-90 in Zootaxa 4110 (1) on page 19, DOI: 10.11646/zootaxa.4110.1.1, http://zenodo.org/record/255316
Trineuragrion percostale Ris 1915
Creators: name: Grand, Daniel
name: Marinov, Milen
name: Jourdan, Herve
name: Cook, Carl
name: Rouys, Sophie
name: Mille, Christian
name: Theuerkauf, Jörn
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Odonata
Megapodagrionidae
Trineuragrion
Trineuragrion percostale

description: Trineuragrion percostale Ris, 1915
(Fig. 11)
Trineuragrion percostale Ris, 1915: 63.
Distribution (Fig. 12). This species has been recorded from both New Caledonia and Vanuatu (Lieftinck 1975; Tsuda 2000). In New Caledonia, we recorded it from more than 25 localities on Grande Terre.
Habitats. Trineuragrion percostale occurs in the same habitats as C. uniseries, in small, fast-flowing, open or forested creeks. This species seems to avoid ultramafic soils.
Biology and behaviour. Adults emerge in the morning, not far above the water in quiet parts of the stream along the banks. Adults remain around water. Males do not seem to be territorial and they fly above fast-flowing water.
Status. Common on Grande Terre and has also been reported for Vanuatu, we rank its conservation status as LC.
description: Published as part of Grand, Daniel, Marinov, Milen, Jourdan, Herve, Cook, Carl, Rouys, Sophie, Mille, Christian & Theuerkauf, Jörn, 2019, Distribution, habitats, phenology and conservation of New Caledonian Odonata, pp. 1-112 in Zootaxa 4640 (1) on page 19, DOI: 10.11646/zootaxa.4640.1, http://zenodo.org/record/3342242
Additional file 1: of â  The university should promote health, but not enforce itâ  : opinions and attitudes about the regulation of sugar-sweetened beverages in a university setting
Creators: name: Howse, Elly
name: Freeman, Becky
name: Wu, Jason
name: Rooney, Kieron
Publisher: name: Figshare
Year: 2017
Subjects: Developmental Biology
Science Policy

description: Copy of study survey. (PDF 351 kb)
Pseudoplon transversum Napp & Martins 1985
Creators: name: Monné, Miguel A.
name: Monné, Marcela L.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Pseudoplon
Pseudoplon transversum

description: 196. Pseudoplon transversum Napp & Martins, 1985a: 114, fig. 1
Holotype male: Brazil, Bahia: Encruzilhada (Motel da Divisa, Rodovia Rio-Bahia, km 965, 960 m), XII.1980, A. Martínez.
description: Published as part of Monné, Miguel A. & Monné, Marcela L., 2016, Checklist of Cerambycidae (Coleoptera) primary types of the Museu Nacional, Rio de Janeiro, Brazil, with a brief history of the collection, pp. 1-90 in Zootaxa 4110 (1) on page 19, DOI: 10.11646/zootaxa.4110.1.1, http://zenodo.org/record/255316
Additional file 2: Figure S3. of Impact of membrane lung surface area and blood flow on extracorporeal CO2 removal during severe respiratory acidosis
Creators: name: Karagiannidis, Christian
name: Strassmann, Stephan
name: Brodie, Daniel
name: Ritter, Philine
name: Larsson, Anders
name: Borchardt, Ralf
name: Windisch, Wolfram
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Pharmacology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Extracorporeal elimination of carbon dioxide (CO2) depending on membrane lung surface. Extracorporeal CO2 elimination was plotted against membrane lung surface. Blood flow was titrated from 250 to 1000Â ml/min. Each data point represents the mean and standard deviation of seven pigs. (PDF 1291Â kb)
Omaloplia ruricola
Creators: name: Barševskis, Arvīds
name: Janovska, Marina
name: Aksjuta, Kristīna
name: Cibuļskis, Raimonds
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Omaloplia
Omaloplia ruricola

description: 59. Omaloplia ruricola (auct. nec Fabricius, 1775)
- Daugavpils distr., Butišķi, velley of Daugava river, 01. VII 2009. (2, A.Bu., M.B.), 1.5 km N Daugavpils, edge of pine forest, 29. VI 2009. (1, A.Bu.).
description: Published as part of Barševskis, Arvīds, Janovska, Marina, Aksjuta, Kristīna & Cibuļskis, Raimonds, 2009, Faunistic Records Of The Beetles (Hexapoda: Coleoptera) In Latvia. 3., pp. 139-159 in Acta Biologica Universitatis Daugavpiliensis 9 (2) on page 144, DOI: 10.5281/zenodo.10602165
Additional file 20 of The influence of thermal and hypoxia induced habitat compression on walleye (Sander vitreus) movements in a temperate lake
Creators: name: Brooks, J. L.
name: Lédée, E. J. I.
name: Larocque, S. M.
name: Cooke, S. J.
name: Brown, E.
name: Midwood, J. D.
Publisher: name: figshare
Year: 2025
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Supplementary file 20.
Spinoplon bicolor Napp & Martins 1985
Creators: name: Monné, Miguel A.
name: Monné, Marcela L.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Spinoplon
Spinoplon bicolor

description: 197. Spinoplon bicolor Napp & Martins, 1985a: 121, fig. 6
Holotype male: Brazil, Bahia: Encruzilhada (Motel da Divisa, Rodovia Rio-Bahia, km 965, 960 m), XII.1974, C.A.C. Seabra & O. Roppa.
description: Published as part of Monné, Miguel A. & Monné, Marcela L., 2016, Checklist of Cerambycidae (Coleoptera) primary types of the Museu Nacional, Rio de Janeiro, Brazil, with a brief history of the collection, pp. 1-90 in Zootaxa 4110 (1) on page 19, DOI: 10.11646/zootaxa.4110.1.1, http://zenodo.org/record/255316
Additional file 1: Figure S1. of Impact of membrane lung surface area and blood flow on extracorporeal CO2 removal during severe respiratory acidosis
Creators: name: Karagiannidis, Christian
name: Strassmann, Stephan
name: Brodie, Daniel
name: Ritter, Philine
name: Larsson, Anders
name: Borchardt, Ralf
name: Windisch, Wolfram
Publisher: name: Figshare
Year: 2017
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Physiology

description: Arterial and venous CO2 before and after membrane lung under different blood flow conditions (250â  1000Â ml/min) with different surfaces. Each data point represents the mean and standard deviation of seven pigs. (PDF 6689Â kb)
Additional file 3 of Tracing the paths of modular evolution by quantifying rearrangement events of protein domains
Creators: name: Coban, Abdulbaki
name: Bornberg-Bauer, Erich
name: Kemena, Carsten
Publisher: name: figshare
Year: 2025
Subjects: subject: Biochemistry
subject: Physical Sciences not elsewhere classified
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Astronomical and Space Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences

description: Supplementary Material 3. DomRates-Seq results for ECM - Results of the DomRates-Seq analysis of the ECM data set, showing the different events on the tree.
Amphimallon solstitiale
Creators: name: Barševskis, Arvīds
name: Janovska, Marina
name: Aksjuta, Kristīna
name: Cibuļskis, Raimonds
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Amphimallon
Amphimallon solstitiale

description: 60. Amphimallon solstitiale (Linnaeus, 1758)
- Bauska distr., Skaistkalne, 19. VI 2009. (1, A.B.); Daugavpils distr., Līksna, 3 km N Daugavpils, 55 o 56’01”N, 026 o 33’36”E, 28. VII 2009. (1, A.Bu.).
description: Published as part of Barševskis, Arvīds, Janovska, Marina, Aksjuta, Kristīna & Cibuļskis, Raimonds, 2009, Faunistic Records Of The Beetles (Hexapoda: Coleoptera) In Latvia. 3., pp. 139-159 in Acta Biologica Universitatis Daugavpiliensis 9 (2) on page 144, DOI: 10.5281/zenodo.10602165
Austroagrion watsoni Plaine des Lacs, Grand Lac Lieftinck 1982
Creators: name: Grand, Daniel
name: Marinov, Milen
name: Jourdan, Herve
name: Cook, Carl
name: Rouys, Sophie
name: Mille, Christian
name: Theuerkauf, Jörn
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Odonata
Coenagrionidae
Austroagrion
Austroagrion watsoni

description: Austroagrion watsoni Lieftinck, 1982
(Fig. 15)
Austroagrion watsoni Lieftinck, 1982: 293.
Distribution (Fig. 16). It is a common and widespread species in Australia, but has a highly restricted distribution in New Caledonia, with only a few known localities in the south of Grande Terre. It was first reported by Bigot (1985) who collected the species in February 1980 on the banks of the Grand Lac (Plaine des Lacs). DG observed one specimen in February 2004 above a cattle tick-treatment pool in the Dumbéa River. It may be a recent establishment on the island or a species in decline in New Caledonia.
Habitat. Austroagrion watsoni is only recorded from open sunny habitats including standing to slowly running waters with dense herbaceous vegetation on the banks.
Biology and behaviour. The larva of this species was described (Hawking 1986; Theischinger & Hawking 2006) but its behaviour is still unknown.
Status. Austroagrion watsoni is one of the rarest species in New Caledonia, with very few specimens observed and it has not been seen since 2004. Therefore, we lack data to assess its conservation status in New Caledonia, as the species may be at the limit of its distribution or may be a vagrant. Lieftinck (1982) revised the genus Austroagrion Tillyard, 1913 and stated that specimens of A. watsoni from New Caledonia are darker than those from Australia. According to Davies (2002) it may be an introduced species (he called it an ‘illegal immigrant’).
description: Published as part of Grand, Daniel, Marinov, Milen, Jourdan, Herve, Cook, Carl, Rouys, Sophie, Mille, Christian & Theuerkauf, Jörn, 2019, Distribution, habitats, phenology and conservation of New Caledonian Odonata, pp. 1-112 in Zootaxa 4640 (1) on pages 23-25, DOI: 10.11646/zootaxa.4640.1, http://zenodo.org/record/3342242
Additional file 1: Table S1: of EMQIT: a machine learning approach for energy based PWM matrix quality improvement
Creators: name: Smolinska, Karolina
name: Pacholczyk, Marcin
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Physiology
subject: Biotechnology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Cancer
subject: Statistics
subject: FOS: Mathematics
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: The β values selected for final improved matrices. Figure S1. The p53 tetramer sequence logos. From top: improved 3DTF matrix, original 3DTF matrix and TRANSFAC matrix. Figure S2. The GABP tetramer sequence logos. From the top: the improved 3DTF matrix, the original 3DTF matrix and the V$GABP_B TRANSFAC matrix. Figure S3. The Erα sequence logos. From the top: the improved 3DTF matrix, the original 3DTF matrix and the V$ERALPHA_Q6_02 TRANSFAC matrix. Figure S4. The p50p50 sequence logos. From the top: the improved 3DTF matrix, the original 3DTF matrix and the V$P50P50_Q3 TRANSFAC matrix. Figure S5. The p50p65 sequence logos. From the top: the improved 3DTF matrix, the original 3DTF matrix and the V$P50RELAP65_Q5_01 TRANSFAC matrix. Figure S6. The HSF1 sequence logos. From the top: the improved 3DTF matrix, the original 3DTF matrix, and the V$HSF_Q6 V$HSF1_Q6_01 TRANSFAC matrix. Figure S7. Results of the improved matrix scan of 21 experimentally confirmed p53 binding sites for the MSS 0.8. Figure S8. Results of the improved matrix scan of 12 experimentally confirmed GABP binding sites for the MSS 0.8. Figure S9. Results of the improved matrix scan of 26 experimentally confirmed Erα binding sites for the MSS 0.8. Figure S10. Results of the improved matrix scan of 19 experimentally confirmed p50p50 binding sites for the MSS 0.8. Figure S11. Results of the improved matrix scan of 46 experimentally confirmed p50p65 binding sites for the MSS 0.8. Figure S12. Results of the improved matrix scan of 26 experimentally confirmed HSF1 binding sites for the MSS 0.8. (PDF 741 kb)
Spinoplon inusitatum Napp & Martins 1985
Creators: name: Monné, Miguel A.
name: Monné, Marcela L.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Spinoplon
Spinoplon inusitatum

description: 198. Spinoplon inusitatum Napp & Martins, 1985a: 119, fig. 5
Holotype male: Brazil, Bahia: Encruzilhada (Motel da Divisa, Rodovia Rio-Bahia, km 965, 960 m), XI.1972, C.A.C. Seabra & O. Roppa.
description: Published as part of Monné, Miguel A. & Monné, Marcela L., 2016, Checklist of Cerambycidae (Coleoptera) primary types of the Museu Nacional, Rio de Janeiro, Brazil, with a brief history of the collection, pp. 1-90 in Zootaxa 4110 (1) on page 19, DOI: 10.11646/zootaxa.4110.1.1, http://zenodo.org/record/255316
Additional file 1: Table S1: of EMQIT: a machine learning approach for energy based PWM matrix quality improvement
Creators: name: Smolinska, Karolina
name: Pacholczyk, Marcin
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Physiology
subject: Biotechnology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Cancer
subject: Statistics
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: The β values selected for final improved matrices. Figure S1. The p53 tetramer sequence logos. From top: improved 3DTF matrix, original 3DTF matrix and TRANSFAC matrix. Figure S2. The GABP tetramer sequence logos. From the top: the improved 3DTF matrix, the original 3DTF matrix and the V$GABP_B TRANSFAC matrix. Figure S3. The Erα sequence logos. From the top: the improved 3DTF matrix, the original 3DTF matrix and the V$ERALPHA_Q6_02 TRANSFAC matrix. Figure S4. The p50p50 sequence logos. From the top: the improved 3DTF matrix, the original 3DTF matrix and the V$P50P50_Q3 TRANSFAC matrix. Figure S5. The p50p65 sequence logos. From the top: the improved 3DTF matrix, the original 3DTF matrix and the V$P50RELAP65_Q5_01 TRANSFAC matrix. Figure S6. The HSF1 sequence logos. From the top: the improved 3DTF matrix, the original 3DTF matrix, and the V$HSF_Q6 V$HSF1_Q6_01 TRANSFAC matrix. Figure S7. Results of the improved matrix scan of 21 experimentally confirmed p53 binding sites for the MSS 0.8. Figure S8. Results of the improved matrix scan of 12 experimentally confirmed GABP binding sites for the MSS 0.8. Figure S9. Results of the improved matrix scan of 26 experimentally confirmed Erα binding sites for the MSS 0.8. Figure S10. Results of the improved matrix scan of 19 experimentally confirmed p50p50 binding sites for the MSS 0.8. Figure S11. Results of the improved matrix scan of 46 experimentally confirmed p50p65 binding sites for the MSS 0.8. Figure S12. Results of the improved matrix scan of 26 experimentally confirmed HSF1 binding sites for the MSS 0.8. (PDF 741 kb)