cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
CONDITION-BASED RISK ASSESSMENT STRATEGY AND ITS HEALTH INDICATOR WITH APPLICATION TO PUMPS AND COMPRESSORS
Creators: name: Liang, Xiaoxia
Publisher: name: London South Bank University
Year: 2021

description: Large rotating machinery, such as centrifugal gas compressors and pumps, are widely applied as crucial components in the petrochemical industries. To enable in-time and effective maintenance of these machines, the concept of a health indicator is arousing great interest. A suitable health indicator indicates the overall health of the machinery and it is closely related to maintenance strategies and decision-making. It can be obtained either from near misses and incident data, or from real-time measured data. However, the existing health indicators have some limitations. On the one hand, the near misses and incident data may have been obtained from similar systems, reflecting population characteristics but not fully accounting for the individual features of the target system. On the other hand, the existing health indicators that use condition monitoring data, mainly focused on detecting incipient faults, and usually do not include financial cost factors when calculating the indicators. Therefore, there is the requirement to develop a single system "Health Indicator", that can show the health condition of a system in real-time, as well as the likely financial loss incurred when a fault is detected in the system, to assist operators on maintenance decision making. This project has developed such an integrated health indicator for rotating machinery. The integrated health indicator described in this thesis is extracted from a novel condition-based risk assessment strategy, which can be regarded as an integration of risk-based maintenance with improved conventional condition-based maintenance, with financial factors taken into account. The value of the health indicator is that it directly illustrates the risk to the system (or equipment), including likely financial loss, which makes it easier for operators to select the optimal time for maintenance or set alarm thresholds given the specific conditions in their companies or plants. This thesis provides a guide to set up an integrated maintenance model for large rotating machinery. It provides a useful reference for researchers working on condition-based fault detection and dynamic risk-based maintenance.
Additional file 3 of Intrafractional stability of MR-guided online adaptive SBRT for prostate cancer
Creators: name: Schaule, J.
name: Chamberlain, M.
name: Wilke, L.
name: Baumgartl, M.
name: Krayenbühl, J.
name: Zamburlini, M.
name: Mayinger, M.
name: Andratschke, N.
name: Tanadini-Lang, S.
name: Guckenberger, M.
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer

description: Additional file 3: Fig. S1. D1ccrectum for the baseline plan on the MR of the day compared to the adapted plan. Bar = median.
Fermi Edge Resonances in Non-equilibrium States of Fermi Gases
Creators: name: Bettelheim, E.
name: Kaplan, Y.
name: Wiegmann, P.
Publisher: name: arXiv
Year: 2011
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: We formulate the problem of the Fermi Edge Singularity in non-equilibrium states of a Fermi gas as a matrix Riemann-Hilbert problem with an integrable kernel. This formulation is the most suitable for studying the singular behavior at each edge of non-equilibrium Fermi states by means of the method of steepest descent, and also reveals the integrable structure of the problem. We supplement this result by extending the familiar approach to the problem of the Fermi Edge Singularity via the bosonic representation of the electronic operators to non-equilibrium settings. It provides a compact way to extract the leading asymptotes.
description: Accepted for publication, J. Phys. A
The State of Language Archiving in the Philippines: Lessons from the Ernesto Constantino Legacy Materials
Creators: name: Elsie Marie Or
name: Dustin Matthew Estrellado
Publisher: name: Zenodo
Year: 2022
Subjects: linguistics
language documentation
language archiving
legacy materials
philipinnes

description: The State of Language Archiving in the Philipinnes: Lessons from the Ernesto Constantino Legacy Materials

Elsie Marie Or & Dustin Matthew Estrellado

Presented 5 October 2022 at the Berlin-Brandenburg Academy of Sciences and Humanities at the Conference Where Do We Need to Go From Here? - Language Documentation and Archiving,  in the UNESCO International Decade of Indigenous Languages
A comprehensive simulation study of dissolved Barium and Oxygen isotope ratio in the Arctic Ocean
Creators: name: Sha, Yingkai
Publisher: name: University of British Columbia
Year: 2017

description: The Arctic Ocean freshwater plays important roles in regional and global climate. Dissolved Barium and the Oxygen isotope ratio are two tracers that provide key information on the river runoff and the sea-ice melt water as two Arctic Ocean freshwater components. In this research, an offline tracer model was developed with dissolved Barium and Oxygen isotope ratio modules and appropriate boundary conditions were applied to the Arctic Ocean to simulate the spatial and temporal variations of the two tracers. The tracer model was run from 2002 to 2013 after a 24-year spin-up. The simulation results show reasonable tracer climatology and seasonal cycles, agree well with field observations and the Arctic freshwater cycle. The tracer model was applied to investigate the atmospheric driven freshwater variabilities in the upper 130m through linear trend and Empirical Orthogonal Function (EOF) analysis. The linear trend result shows the increase in the transport of Eurasian runoff from the Makarov Basin to the Beaufort Sea and concurrent with the increase in the winter-spring Arctic Oscillation (AO). The three EOF modes show the role of the dipole anomaly, the interannual impact of the North Atlantic Oscillation (NAO) and the Beaufort Sea anticyclonic anomalous wind, respectively on changing the pathway of the high Barium concentration North American runoff and the impact of the Eurasian runoff along the continental shelves and in the central Arctic. A case study of the Beaufort Gyre freshwater in 2007-2008 revealed the change of Eurasian runoff pathways in three stages with the dipole anomaly and the transport of Eurasian runoff in the developing stage, the strong anti-cyclonic wind in the Beaufort Sea in the mature stage and the weakening of the Beaufort Gyre in the final stage. A linear mixing model result confirms the increase of the Eurasian runoff in the Beaufort Gyre in the winter of 2007.
Additional file 2 of Intrafractional stability of MR-guided online adaptive SBRT for prostate cancer
Creators: name: Schaule, J.
name: Chamberlain, M.
name: Wilke, L.
name: Baumgartl, M.
name: Krayenbühl, J.
name: Zamburlini, M.
name: Mayinger, M.
name: Andratschke, N.
name: Tanadini-Lang, S.
name: Guckenberger, M.
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer

description: Additional file 2: Table S2. Dose Constraints.
Broadband magnetometry by infrared-absorption detection of nitrogen-vacancy ensembles in diamond
Creators: name: Acosta, V. M.
name: Bauch, E.
name: Jarmola, A.
name: Zipp, L. J.
name: Ledbetter, M. P.
name: Budker, D.
Publisher: name: arXiv
Year: 2010
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We demonstrate magnetometry by detection of the spin state of high-density nitrogen-vacancy ensembles in diamond using optical absorption at 1042 nm. With this technique, measurement contrast, and collection efficiency can approach unity, leading to an increase in magnetic sensitivity compared to the more common method of collecting red fluorescence. Working at 75 K with a sensor with effective volume $50 \times 50 \times 300$ microns^3, we project photon shot-noise limited sensitivity of 5 pT in one second of acquisition and bandwidth from dc to a few megahertz. Operation in a gradiometer configuration yields a noise floor of 7 nTrms at ~110 Hz in one second of acquisition.
description: 4 pages, 3 figures
Additional file 1 of Intrafractional stability of MR-guided online adaptive SBRT for prostate cancer
Creators: name: Schaule, J.
name: Chamberlain, M.
name: Wilke, L.
name: Baumgartl, M.
name: Krayenbühl, J.
name: Zamburlini, M.
name: Mayinger, M.
name: Andratschke, N.
name: Tanadini-Lang, S.
name: Guckenberger, M.
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer

description: Additional file 1: Table S1. Couch shifts; A lateral, B vertical, C axial shifts in cm. Each line represents one volunteer. Bold = median.
Additional file 2 of Kinetic measurement system use in individuals following anterior cruciate ligament reconstruction: a scoping review of methodological approaches
Creators: name: Labban, Wasim
name: Stadnyk, Meredith
name: Sommerfeldt, Mark
name: Nathanail, Stephanie
name: Dennett, Liz
name: Westover, Lindsey
name: Manaseer, Thaer
name: Beaupre, Lauren
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 2. Data Extraction Tables.
Supersymmetry Flows, Semi-Symmetric Space Sine-Gordon Models And The Pohlmeyer Reduction
Creators: name: Schmidtt, David M.
Publisher: name: arXiv
Year: 2010
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: We study the extended supersymmetric integrable hierarchy underlying the Pohlmeyer reduction of superstring sigma models on semi-symmetric superspaces F/G. This integrable hierarchy is constructed by coupling two copies of the homogeneous integrable hierarchy associated to the loop Lie superalgebra extension f of the Lie superalgebra f of F and this is done by means of the algebraic dressing technique and a Riemann-Hilbert factorization problem. By using the Drinfeld-Sokolov procedure we construct explicitly, a set of 2D spin \pm1/2 conserved supercharges generating supersymmetry flows in the phase space of the reduced model. We introduce the bi-Hamiltonian structure of the extended homogeneous hierarchy and show that the two brackets are of the Kostant-Kirillov type on the co-adjoint orbits defined by the light-cone Lax operators L_\pm. By using the second symplectic structure, we show that these supersymmetries are Hamiltonian flows, we compute part of the supercharge algebra and find the supersymmetric field variations they induce. We also show that this second Poisson structure coincides with the canonical Lorentz-Invariant symplectic structure of the WZNW model involved in the Lagrangian formulation of the extended integrable hierarchy, namely, the semi-symmetric space sine-Gordon model (SSSSG), which is the Pohlmeyer reduced action functional for the transverse degrees of freedom of superstring sigma models on the cosets F/G. We work out in some detail the Pohlmeyer reduction of the AdS_2xS^2 and the AdS_3xS^3 superstrings and show that the new conserved supercharges can be related to the supercharges extracted from 2D superspace. In particular, for the AdS_2xS^2 example, they are formally the same.
description: V2: Two references added, V3: Modifications in section 2.6, V4: Published version
Humans, climate, and an ignitions-limited fire regime at Vaseux Lake
Creators: name: Pogue, Alexandra Menke
Publisher: name: University of British Columbia
Year: 2017

description: This study investigated the role of human land use and climate as drivers of the historical fire regime of a 400ha protected area in the Okanagan region of British Columbia. I used fire scars and forest demography data to reconstruct spatiotemporal patterns in fires from 1714 - 2013. I also used paleo-climate reconstructions derived from tree ring series to evaluate whether historical fire-climate relationships changed with the displacement of indigenous peoples. Fire patterns were closely coupled with the human history of the study area. Fires were more frequent, less synchronous, and burned earlier in the season when indigenous people were stewarding the study area traditionally. Logistic regression showed that fires were also twice as likely during this period, and that topographic factors were not a significant control of the fire regime. Analysis of fire-climate relationships revealed that human land use superseded the effects of inter-annual and decadal-scale climate as a driver of historical fires. Fires occurred during a variety of conditions when indigenous people were stewarding the study area traditionally, while fires after indigenous people were displaced were associated with El Niño years, which tend to bring warm/dry conditions to the region. The historical fire regime at Vaseux was of mixed-severity in time and space, and this variability helped generate a complex forest structure. Historical fires acted to control tree establishment and mortality, and the forest is now denser than it was historically due to reduced fire frequency in the late 20th century. Continued infilling could shift the fire regime towards a greater component of high-severity fire. The results suggest that indigenous traditional land stewardship was the dominant control of historical fire dynamics at Vaseux. Managers wishing to preserve habitat and forest structures generated by the historical fire regime will need to account for the influence of indigenous burning, and modern lightning intervals will not be a sufficient baseline for setting treatment intervals. Proactive management designed to maintain a fire regime of frequent mixed-severity fires will be necessary to promote ecological resilience in an uncertain future.
Additional file 1 of Kinetic measurement system use in individuals following anterior cruciate ligament reconstruction: a scoping review of methodological approaches
Creators: name: Labban, Wasim
name: Stadnyk, Meredith
name: Sommerfeldt, Mark
name: Nathanail, Stephanie
name: Dennett, Liz
name: Westover, Lindsey
name: Manaseer, Thaer
name: Beaupre, Lauren
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1. Search Strategies.
Additional file 3 of Feasibility and utility of MRI and dynamic 18F-FDG-PET in an orthotopic organoid-based patient-derived mouse model of endometrial cancer
Creators: name: Espedal, Heidi
name: Berg, Hege F.
name: Fonnes, Tina
name: Fasmer, Kristine E.
name: Krakstad, Camilla
name: Haldorsen, Ingfrid S.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Cancer

description: Additional file 3. Calculated mean metabolic tumor volumes (MTV) using the two alternative segmentation algorithms and corresponding mean anatomic tumor volumes from MRI (vMRI).
Additional file 2 of Feasibility and utility of MRI and dynamic 18F-FDG-PET in an orthotopic organoid-based patient-derived mouse model of endometrial cancer
Creators: name: Espedal, Heidi
name: Berg, Hege F.
name: Fonnes, Tina
name: Fasmer, Kristine E.
name: Krakstad, Camilla
name: Haldorsen, Ingfrid S.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Cancer

description: Additional file 2. Overview of measured SUVmean values in liver and threshold-values used for tumor segmentation.
Longitudinal Fluctuations in Partonic and Hadronic Initial State
Creators: name: Cheng, Yun
name: Yan, Yu-Liang
name: Zhou, Dai-Mei
name: Cai, Xu
name: Sa, Ben-Hao
name: Csernai, Laszlo P.
Publisher: name: arXiv
Year: 2011
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Collective flow in collisions between Lead nuclei at LHC are influenced by random initial state fluctuations, especially for odd harmonics. Here we extend fluctuation studies to longitudinal fluctuations, which may have significant effect on the rapidity distribution of odd harmonics. Furthermore center of mass rapidity fluctuations are measurable, but not yet analysed. Here in the PACIAE parton and hadron molecular dynamics model we make an analysis of initial state fluctuations. As previous analyses discussed mainly the effects of fluctuations on eccentricity and the elliptic flow we pay particular attention to the fluctuations of the Center of Mass rapidity of the system, which is conservatively estimated in our model as Δy_{CM} = 0.1, by neglecting all pre-equilibrium emission effects that are increasing the y_{CM} fluctuations.
description: 7 pages, 5 figures
Additional file 1 of Bias, dispersion, and accuracy of genomic predictions for feedlot and carcase traits in Australian Angus steers
Creators: name: Alexandre, Pâmela A.
name: Li, Yutao
name: Hine, Brad C.
name: Duff, Christian J.
name: Ingham, Aaron B.
name: Porto-Neto, Laercio R.
name: Reverter, Antonio
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Table S1. Levels of sire linkage (negligible) across cohorts. The data provided represent the level of sire linkage across the year of birth cohorts used as validation population. Table S2. Breeding property linkages across cohorts. The data provided represent the breeding property linkages across the year of birth cohorts used as validation population. Table S3. Summary statistics for the genomic relationship matrix (GRM) values computed using Method 1 of VanRaden [29]. The data provided represent the summary statistics for the genomic relationship matrix (GRM) values computed using Method 1 of VanRaden [29]. Table S4. Accuracy (ACCT) of GEBV for feedlot and carcase traits from a 7-way cross-validation scheme based on YOB cohorts. The data provided represent the accuracy (computed from the correlation between GEBV and adjusted phenotypes in the validation population divided by the square root of heritability) of GEBV for feedlot and carcase traits from a 7-way cross-validation scheme based on year of birth cohorts used as validation population. Table S5. Estimates of GEBV bias using the LR method (BiasLR) for feedlot and carcase traits from a 7-way cross-validation scheme based on YOB cohorts. The data provided represent the estimates of GEBV bias using the LR method for feedlot and carcase traits from a 7-way cross-validation scheme based on year of birth cohorts used as validation population. Table S6. Estimates of GEBV dispersion using the LR method for feedlot and carcase traits from a 7-way cross-validation scheme based on YOB cohorts. The data provided represent the estimates of GEBV dispersion using the LR method (DispLR) for feedlot and carcase traits from a 7-way cross-validation scheme based on year of birth cohorts used as validation population. Table S7. Estimates of GEBV accuracy using the LR method (ACCLR) for feedlot and carcase traits from a 7-way cross-validation scheme based on YOB cohorts. The data provided represent the estimates of GEBV accuracy using the LR method for feedlot and carcase traits from a 7-way cross-validation scheme based on year of birth cohorts used as validation population.
Additional file 1 of Transcriptome-based analysis of blood samples reveals elevation of DNA damage response, neutrophil degranulation, cancer and neurodegenerative pathways in Plasmodium falciparum patients
Creators: name: Karikari, Akua A.
name: Wruck, Wasco
name: Adjaye, James
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Figure S1. Distribution of log2-ratios of CM vs. NCM. A Gaussian distribution curve is overlaid (mean=0, sd=0.36). Red lines indicate ratio of 2 (0.5) and blue lines ratio of 1.5 (2/3). The area under curve for ratio 1.5 and 2/3 is ~ 90%, the area for ratio 2 and 0.5 is > 99%.
Radiative decay of Lambdac(2940)+ in a hadronic molecule picture
Creators: name: Dong, Yubing
name: Faessler, Amand
name: Gutsche, Thomas
name: Kumano, S.
name: Lyubovitskij, Valery E.
Publisher: name: arXiv
Year: 2010
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The Lambdac(2940)+ baryon with quantum numbers J(P) = 1/2(+) is considered as a molecular state composed of a nucleon and D* meson. We give predictions for the width of the radiative decay process Lambdac(2940)+ to Lambdac(2286)+ gamma in this interpretation. Based on our results we argue that an experimental determination of the radiative decay width of Lambdac(2940)+ is important for the understanding of its intrinsic properties.
description: 9 pages, 2 figures
Additional file 1 of Synthesis and anti-oxidant activity of coumarinyl chalcones
Creators: name: Prasad, Raj Keshwar
name: Loksh, Kavita R.
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Neuroscience
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Cancer

description: Additional file 1. Scheme 1.
Minimal doubling and point splitting
Creators: name: Creutz, Michael
Publisher: name: arXiv
Year: 2010
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: Minimally-doubled chiral fermions have the unusual property of a single local field creating two fermionic species. Spreading the field over hypercubes allows construction of combinations that isolate specific modes. Combining these fields into bilinears produces meson fields of specific quantum numbers.
description: 6 pages; poster contribution to The XXVIII International Symposium on Lattice Field Theory Revised version corrects typos
First passage time distribution for a random walker on a random forcing energy landscape
Creators: name: Sheinman, Michael
name: Bénichou, Olivier
name: Voituriez, Raphaël
name: Kafri, Yariv
Publisher: name: arXiv
Year: 2010
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: We present an analytical approximation scheme for the first passage time distribution on a finite interval of a random walker on a random forcing energy landscape. The approximation scheme captures the behavior of the distribution over all timescales in the problem. The results are carefully checked against numerical simulations.
description: 16 pages
Additional file 3 of Evaluating measures of quality of life in adult scoliosis: a protocol for a systematic review and narrative synthesis
Creators: name: Archer, James E.
name: Baird, Charles
name: Gardner, Adrian
name: Rushton, Alison B.
name: Heneghan, Nicola R.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3. Appendix 3 – Data collection table.
Additional file 2 of Evaluating measures of quality of life in adult scoliosis: a protocol for a systematic review and narrative synthesis
Creators: name: Archer, James E.
name: Baird, Charles
name: Gardner, Adrian
name: Rushton, Alison B.
name: Heneghan, Nicola R.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2. Appendix 2 – Search strategy two.
Additional file 7 of Odorant-binding proteins in canine anal sac glands indicate an evolutionarily conserved role in mammalian chemical communication
Creators: name: Janssenswillen, Sunita
name: Roelants, Kim
name: Carpentier, Sebastien
name: de Rooster, Hilde
name: Metzemaekers, Mieke
name: Vanschoenwinkel, Bram
name: Proost, Paul
name: Bossuyt, Franky
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 7. Overview of obp genes with previously identified secretion sites of their corresponding proteins.
Additional file 1 of Evaluating measures of quality of life in adult scoliosis: a protocol for a systematic review and narrative synthesis
Creators: name: Archer, James E.
name: Baird, Charles
name: Gardner, Adrian
name: Rushton, Alison B.
name: Heneghan, Nicola R.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. Appendix 1 – Search strategy one.
Quantum chaos of a mixed, open system of kicked cold atoms
Creators: name: Krivolapov, Yevgeny
name: Fishman, Shmuel
name: Ott, Edward
name: Antonsen, Thomas M.
Publisher: name: arXiv
Year: 2010
Subjects: subject: Quantum Physics (quant-ph)
subject: Atomic Physics (physics.atom-ph)
subject: FOS: Physical sciences

description: The quantum and classical dynamics of particles kicked by a gaussian attractive potential are studied. Classically, it is an open mixed system (the motion in some parts of the phase space is chaotic, and in some parts it is regular). The fidelity (Lochshmidt echo) is found to exhibit oscillations that can be determined from classical considerations but are sensitive to phase space structures that are smaller than Planck's constant. Families of quasi-energies are determined from classical phase space structures. Substantial differences between the classical and quantum dynamics are found for time dependent scattering. It is argued that the system can be experimentally realized by cold atoms kicked by a gaussian light beam.
description: 19 pages, 21 figures, (accepted for publication in Phys. Rev. E)
Additional file 4 of Aerobic exercise training prevents impairment in renal parameters and in body composition of rats fed a high sucrose diet
Creators: name: de Souza, Jaqueline A.
name: Pinto, Angélica B. Gonçalves
name: de Oliveira, Emerson C.
name: Coelho, Daniel B.
name: Totou, Nádia L.
name: de Lima, Wanderson G.
name: Becker, Lenice K.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Hematology

description: Additional file 4: Table S2. Table with additional information about the study.
Thermal and magnetic properties of a low-temperature antiferromagnet Ce$_4$Pt$_{12}$Sn$_{25}$
Creators: name: Kurita, Nobuyuki
name: Lee, Han-Oh
name: Tokiwa, Yoshi
name: Miclea, Corneliu F.
name: Bauer, Eric D.
name: Ronning, Filip
name: Thompson, J. D.
name: Fisk, Zachary
name: Ho, Pei-Chun
name: Maple, M. Brian
name: Sengupta, Pinaki
name: Vekhter, Ilya
name: Movshovich, Roman
Publisher: name: arXiv
Year: 2010
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We report specific heat ($C$) and magnetization ($M$) of single crystalline Ce$_4$Pt$_{12}$Sn$_{25}$ at temperature down to $\sim$50mK and in fields up to 3T. $C/T$ exhibits a sharp anomaly at 180mK, with a large $ΔC/T\sim$30J/molK$^2$-Ce, which, together with the corresponding cusp-like magnetization anomaly, indicates an antiferromagnetic (AFM) ground state with a Néel temperature $T_N$=180mK. Numerical calculations based on a Heisenberg model reproduce both zero-field $C$ and $M$ data, thus placing Ce$_4$Pt$_{12}$Sn$_{25}$ in the weak exchange coupling $J
description: 8 pages, 7 figures, accepted for publication in Phys. Rev. B
Additional file 3 of Aerobic exercise training prevents impairment in renal parameters and in body composition of rats fed a high sucrose diet
Creators: name: de Souza, Jaqueline A.
name: Pinto, Angélica B. Gonçalves
name: de Oliveira, Emerson C.
name: Coelho, Daniel B.
name: Totou, Nádia L.
name: de Lima, Wanderson G.
name: Becker, Lenice K.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Hematology

description: Additional file 3: Table S1. Body weight measurements and food intake before and after T.
Tricritical point in explosive percolation
Creators: name: Araujo, Nuno A. M.
name: Andrade, Jose S.
name: Ziff, Robert M.
name: Herrmann, Hans J.
Publisher: name: arXiv
Year: 2010
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: The suitable interpolation between classical percolation and a special variant of explosive percolation enables the explicit realization of a tricritical percolation point. With high-precision simulations of the order parameter and the second moment of the cluster size distribution a fully consistent tricritical scaling scenario emerges yielding the tricritical crossover exponent $1/ϕ_t=1.8\pm0.1$.
description: 5 pages, 6 figures, final version
Additional file 2 of Aerobic exercise training prevents impairment in renal parameters and in body composition of rats fed a high sucrose diet
Creators: name: de Souza, Jaqueline A.
name: Pinto, Angélica B. Gonçalves
name: de Oliveira, Emerson C.
name: Coelho, Daniel B.
name: Totou, Nádia L.
name: de Lima, Wanderson G.
name: Becker, Lenice K.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Hematology

description: Additional file 2: Figure S2. Scheme of experimental design showing the different stages for the development of the model, allocation of animals in different groups and main experimental tests carried out in this study. Weaned rats from CCA-UFOP were fed diets containing 68% carbohydrates, 33% standard commercial feed, 33% condensed milk, 7% sucrose and the remaining water or standard pellet diet for 12 weeks since weaning. In the 4th week, the rats were adapted (4 days) to the aquatic environment and the animals related to the trained groups underwent swimming training for 8 weeks. The exhaustion time protocol was performed at weeks 4 and 12 to assess the animals' physical performance. The measurements of water intake and urinary volume performed in a metabolic cage were performed on the 12nd week, in addition to the renal (for analysis of renal function and histology) and body composition (BAI, LI and RAT weight) experiments, which were performed 48 h after last T session at the end of the 12nd week, at which time the rats were euthanized and samples of blood and kidney tissue were collected for analysis. Body weight measurements were taken at weeks 1, 4, 5, 7 and 11 and food intake measurements were taken at weeks 1, 5 and 10. CCA-UFOP (Center of Animal Science of UFOP); SD (standart diet); SUD (sucrose diet); T (swimming training).
Additional file 1 of Odorant-binding proteins in canine anal sac glands indicate an evolutionarily conserved role in mammalian chemical communication
Creators: name: Janssenswillen, Sunita
name: Roelants, Kim
name: Carpentier, Sebastien
name: de Rooster, Hilde
name: Metzemaekers, Mieke
name: Vanschoenwinkel, Bram
name: Proost, Paul
name: Bossuyt, Franky
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1. Information on individual dogs and total protein concentrations of ASGS samples.
Additional file 1 of Aerobic exercise training prevents impairment in renal parameters and in body composition of rats fed a high sucrose diet
Creators: name: de Souza, Jaqueline A.
name: Pinto, Angélica B. Gonçalves
name: de Oliveira, Emerson C.
name: Coelho, Daniel B.
name: Totou, Nádia L.
name: de Lima, Wanderson G.
name: Becker, Lenice K.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Hematology

description: Additional file 1: Figure S1. Body adiposity index values (panel A), *different from S-SD, T-SD and T-SUD groups, +different from S-SD group. Lee index values (panel B), *different from S-SD, T-SD, T-SUD groups. Retroperitoneal adipose tissue weight values (panel C), *different from S-SD, T-SD and T-SUD groups, **different from S-SD group. It was used the parametric test, two-way ANOVA followed by Tukey’s post-test; p
Molecular simulation of nucleation and dissolution of alkali halides
Creators: name: Lanaro, Gabriele
Publisher: name: University of British Columbia
Year: 2017

description: The process of crystal nucleation, despite being so fundamental and ubiquitous in industrial and natural processes, is still not fully understood because of its stochastic nature, and the high spatial and temporal resolution needed to observe it through experiments. This thesis investigates several aspects of nucleation through the use of molecular dynamics, a computational technique that is able to simulate systems up to ~10¹² atoms (as of today's computational power). The projects in this thesis focus on the nucleation from aqueous solution of alkali halide salts, with supplementary studies on the related processes of dissolution in water, and crystallization from the melt. The mechanism of NaCl nucleation from solution is examined in Chapter 3 by direct simulation. The NaCl supersaturated solution was found to contain many small ionic clusters that continuously form and disappear from solution until one (or more) of them nucleates and grows irreversibly. An original method was developed to detect and follow clusters in time, producing results useful in the study of their characteristics and lifetimes. Most importantly, it was found that the lifetime of transient clusters is about ~1 ns, and that both the cluster lifetime and nucleation probability are significantly higher if the cluster is more geometrically ordered. The dissolution of NaCl crystals was also investigated. The process was found to happen in stages, is characterized by an activation barrier, and can be described by a simple rate law. The crystal nucleation of LiF from supersaturated solution was observed, in our simulations, only at high pressure and temperature. The growth rate for an already nucleated crystal was found to have a temperature dependence that follows the Arrhenius law, and further evidence suggests that the reason for such behavior is the high activation energy required to dehydrate the ions. The crystallization from the melt of the Joung-Cheatham and Tosi-Fumi models for lithium halides was also investigated. We found that, for the Tosi-Fumi model, all lithium halides crystallize as wurtzite. For the Joung-Cheatham model, LiF and LiCl crystallize as rock salt, while LiBr and LiI crystallize as wurtzite.
Integrin-linked kinase in a stem cell model of glioblastoma
Creators: name: Loftus, Alexander Eamonn Patrick
Publisher: name: The University of Edinburgh
Year: 2021
Subjects: Glioblastoma multiforme
GBM
ILK
invadopodia
NPE cells

description: Glioblastoma multiforme (GBM) is both the most common and the most deadly adult brain tumour, with a 5-year survival rate of only 3-5%. There is a pressing need for investigation into novel therapies for GBM, but a lack of suitable cellular models has hindered progress. Here, using a genetically-defined glioblastoma stem cell (GSC) model featuring deletion of Nf1 and Pten and exogenous expression of EGFRVIII (NPE), we show a requirement for the pseudokinase and adhesion protein integrin-linked kinase (ILK) in GSC migration and invasion. ILK-deficient NPE cells demonstrated a lack of migration and a switch to spheroid-like growth, which correlated with reduced invasion in three dimensional assays. Microscopic analysis revealed that ILK-deficient NPE cells fail to form invadopodia, actin-based structures enriched for matrix metalloproteinases which mediate cancer cell invasion, and that these NPE cells were unable to degrade extracellular matrix in vitro. Consistently, ILK-deficient NPE cells failed to form tumours in vivo, indicating an indispensable role for ILK in GSC outgrowth. We also discovered an unexpected requirement for ILK in NPE cell astrocytic differentiation and associated induction of signalling through the transcription factor STAT3, a known regulator of GSC phenotype and tumourigenesis. Overall, my data implicate ILK as a critical regulator of GSC invasion and uncover an unexpected link between GSC differentiation and adhesion proteins. Future work will seek to define a pharmacologically targetable mechanism by which ILK mediates these essential processes for GBM tumourigenesis and to establish whether it has a similar key role in human GBM.
Additional file 1 of Artificial intelligence for pre-operative lymph node staging in colorectal cancer: a systematic review and meta-analysis
Creators: name: Bedrikovetski, Sergei
name: Dudi-Venkata, Nagendra N.
name: Kroon, Hidde M.
name: Seow, Warren
name: Vather, Ryash
name: Carneiro, Gustavo
name: Moore, James W.
name: Sammour, Tarik
Publisher: name: figshare
Year: 2021
Subjects: subject: Space Science
subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer

description: Additional file 1: Table S1. Search Strategy. Table S2. Diagnostic accuracy measures. Table S3. Selected characteristics of included studies. Table S3. Quality assessment of studies included in systematic review, according to the Quality Assessment of Diagnostic Accuracy Studies-2 (QUADAS-2) Tool adapted with signalling questions by Sollini et al. Figure S1. Publication bias presentation using funnel plot of included studies.
Additional file 1 of Synergistic efficacy of inhibiting MYCN and mTOR signaling against neuroblastoma
Creators: name: Kling, Matthew J.
name: Griggs, Connor N.
name: McIntyre, Erin M.
name: Alexander, Gracey
name: Ray, Sutapa
name: Challagundla, Kishore B.
name: Joshi, Shantaram S.
name: Coulter, Don W.
name: Chaturvedi, Nagendra K.
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 1.
Additional file 9 of A matrisome RNA signature from early-pregnancy mouse mammary fibroblasts predicts distant metastasis-free breast cancer survival in humans
Creators: name: Ibrahim, Ayman M.
name: Bilsland, Alan
name: Rickelt, Steffen
name: Morris, Joanna S.
name: Stein, Torsten
Publisher: name: figshare
Year: 2021
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 9: Figure S6. Kaplan–Meier analyses generated using the GOBO online tool for the 64-gene matrisome signature (DMFS) in all patients and each breast cancer subgroup classified based on ER status, Tumor grade, LN status and molecular subtyping according to Hu et al. [49–51]or PAM50 (Luminal A, Luminal B, Her-2, Basal and Normal-like) [52], as well as Tamoxifen treatment.
Three-dimensional super-resolution imaging: from cellular surface to interior
Creators: name: Tafteh, Reza
Publisher: name: University of British Columbia
Year: 2018

description: Single-molecule localization microscopy has greatly improved our understanding of biology by providing super-resolution images of biological processes and structures. However, it is still very challenging to apply this technique to thick tissues. A 3D imaging system based on single-molecule localization microscopy is presented to allow high-accuracy drift-free (< 0.7 nm lateral; 2.5 nm axial) imaging many microns deep into a cell. When imaging deep within a cell, distortions of the point-spread function result in an inaccurate and very compressed Z distribution. For the system to accurately represent the position of each molecule, a series of depth-dependent calibrations are required. The system and its allied methodology were developed to image the type-2 Ryanodine receptor (RYR2) in the cardiac myocyte at a depth of several microns. It enabled us to resolve the structure of the individual (30 nm square) receptors giving a result similar to that obtained with electron tomography. We also present an optical setup using an electrically tunable lens to actively stabilize a single-molecule localization microscope in three dimensions (RMS ~ 0.7 nm lateral; ~ 2.7 nm axial). The effectiveness of the ETL was demonstrated by imaging endosomal transferrin receptors near the apical surface of B-lymphocytes at a depth of 8 µm. This stabilization system enables a more accurate topological cluster analysis. We have used these super-resolution imaging approaches to examine overlap between the RYR2 and the L-type Calcium channel (Cav1.2) on the cellular surface and within the rat ventricular myocyte. We accurately imaged receptors down to a depth of 6 µm below the surface, and for the first time, using light microscopy, we were able to image individual receptors. The distribution of RyR2 and Cav1.2 parallel each other and vary greatly between the surface, just below the surface, and deep in the interior. We have also used two-color super-resolution microscopy to quantify receptor organization on the plasma membrane of follicular (FO) and marginal zone (MZ) B cells. We have found that B cell receptors (BCR) on the surface of MZ B cells were more dispersed and exhibited less clustering than those on FO B cells.
Additional file 7 of A matrisome RNA signature from early-pregnancy mouse mammary fibroblasts predicts distant metastasis-free breast cancer survival in humans
Creators: name: Ibrahim, Ayman M.
name: Bilsland, Alan
name: Rickelt, Steffen
name: Morris, Joanna S.
name: Stein, Torsten
Publisher: name: figshare
Year: 2021
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 7: Figure S5. STRING analysis using the 64-gene matrisome genes showing their predicted protein–protein interactions. The table below shows the two most significantly over-represented Gene Ontology (GO) biological processes, molecular functions, and local network clusters with enrichment-level (strength) and false-discovery rate (FDR) for each grouping. The ‘Count in gene set’ numbers represent the number of genes within our signature associated with a particular GO group out of the total of genes associated with this group.
Additional file 9 of Evaluating and strengthening the health system of Curaҫao to improve its performance for future outbreaks of vector-borne diseases
Creators: name: Mulderij-Jansen, Vaitiare
name: Gerstenbluth, Izzy
name: Duits, Ashley
name: Tami, Adriana
name: Bailey, Ajay
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 9: Table S3. Coding list
Additional file 6 of A matrisome RNA signature from early-pregnancy mouse mammary fibroblasts predicts distant metastasis-free breast cancer survival in humans
Creators: name: Ibrahim, Ayman M.
name: Bilsland, Alan
name: Rickelt, Steffen
name: Morris, Joanna S.
name: Stein, Torsten
Publisher: name: figshare
Year: 2021
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 6: Figure S4. Immunohistochemical analysis using the contralateral inguinal mammary glands for validation of the specific expression of VCAN around the outgrowing ductal epithelium in the three mice used for the isolation of 3-days pregnancy-associated fibroblasts (P3 A-C) and their age-matched control counterparts (Ctrl A-C). Similar results were obtained for ALX4. Note that for ALX4 Ctrl A and P3 A show the same sections as in Fig. 3A. Scale bars are 100 µm.