cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Photoscotosia atrostrigata
Creators: name: Beljaev, Еvgeniy A.
name: Titova, Olga L.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Geometridae
Photoscotosia
Photoscotosia atrostrigata

description: Photoscotosia atrostrigata (Bremer), ab.
(Figs 32a, 32b, 63)
Photoscotosia lucicolens, nec Butler: Beljaev & Mironov 2019: 261 (Sakhalin).
Material examined. 1 ♀, S Kholmsk, 17.VIII.2016, O. Titova.
Remarks. The erroneous report of “ Photoscotosia lucicolens ” from Sakhalin (Beljaev & Mironov 2019, 2021) was based on the aberrant specimen of Ph. atrostrigata, cited here. The specimen possesses the blackish postdiscal blotch on the underside of forewing similar to those of Ph. lucicolens (see Beljaev & Knyazev 2021, figs 5–10), but the genitalia dissection undoubtedly indicated the belonging of this female to Ph. atrostrigata (Fig. 63). Evidently, it is a rare aberration in the wing marking, since we examined dozens of specimens of Ph. atrostrigata from Sakhalin but did not find more specimens of this form. Nevertheless, this sample shows that the shape of the blotch is not an undoubted character to distinguish Ph. atrostrigata from Ph. lucicolens. Thus, Ph. lucicolens has to be excluded from the fauna of Sakhalin.
The distribution of Ph. atrostrigata is strictly East Asian. Its indication from S Siberia (Altai and Tuva) (Mironov et al. 2008: 213; Beljaev 2016: 606) is based on a misprint in the first cited publication.
description: Published as part of Beljaev, Еvgeniy A. & Titova, Olga L., 2023, New data on geometroid moths (Lepidoptera: Geometroidea: Uraniidae and Geometridae) from Sakhalin and Moneron islands with notes on their taxonomy distribution and ecology, pp. 1-41 in Zootaxa 5369 (1) on page 18, DOI: 10.11646/zootaxa.5369.1.1, http://zenodo.org/record/10147411
Xenofrea obscura Galileo & Martins 2005
Creators: name: Groll, Elisa Von
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Xenofrea
Xenofrea obscura

description: Xenofrea obscura Galileo & Martins, 2005
Galileo & Martins, 2005c:385, figs 4, 7.
Holotype ♀, ARGENTINA, Entre Rios: Liebig, II.1988 (MCNZ 124.511).
description: Published as part of Groll, Elisa Von, 2017, Catalogue of Coleoptera type specimens housed in the collection of the Museu de Ciências Naturais, Fundação Zoobotânica do Rio Grande do Sul, Brazil, pp. 439-473 in Zootaxa 4318 (3) on page 456, DOI: 10.11646/zootaxa.4318.3.2, http://zenodo.org/record/887750
Melanesiandra solomonensis
Creators: name: Groll, Elisa Von
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Melanesiandra
Melanesiandra solomonensis

description: Melanesiandra solomonensis (Arigony, 1983)
Arigony, 1983:40, figs 1–18 (Parandra); Santos-Silva, Heffern & Matsuda, 2010:42, 45, figs 24–25, 83, 136–137, 223, 266, 327, 379–380 & 381 (comb. nov.).
Paratypes: ♂, ♀, SOLOMON ISLANDS, Ins. Santa Anna, “57”, Tippman col., “213112”, SMT, (MCNZ 56.502,
56.503); ♀, [no data indicated], [no collector indicated], (Ankauf Mucho, Staatliches Museum für Tierdunke,
Dresen) (MCNZ 56.503).
description: Published as part of Groll, Elisa Von, 2017, Catalogue of Coleoptera type specimens housed in the collection of the Museu de Ciências Naturais, Fundação Zoobotânica do Rio Grande do Sul, Brazil, pp. 439-473 in Zootaxa 4318 (3) on page 456, DOI: 10.11646/zootaxa.4318.3.2, http://zenodo.org/record/887750
Parandra (P.) monnei
Creators: name: Groll, Elisa Von
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Parandra
Parandra monnei

description: Parandra (P.) monnei (Santos-Silva, 2001)
Santos-Silva, 2001b:229, figs 50–65, 92 (Hesperandra); Santos-Silva & Shute, 2009:31 (comb. nov.).
Paratype ♂, BRAZIL, São Paulo: São Paulo (MCNZ 234.029).
description: Published as part of Groll, Elisa Von, 2017, Catalogue of Coleoptera type specimens housed in the collection of the Museu de Ciências Naturais, Fundação Zoobotânica do Rio Grande do Sul, Brazil, pp. 439-473 in Zootaxa 4318 (3) on pages 456-457, DOI: 10.11646/zootaxa.4318.3.2, http://zenodo.org/record/887750
Parandra (P.) ubirajarai
Creators: name: Groll, Elisa Von
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Parandra
Parandra ubirajarai

description: Parandra (P.) ubirajarai (Santos-Silva, 2001)
Santos-Silva, 2001a:216, figs 3–18 (Hesperandra); Santos-Silva & Shute, 2009:31 (comb. nov.). Paratype ♀, BRAZIL, São Paulo: Salesópolis (Estação Biológica de Boracéia), IV.1997, Instituto de Biociências—USP col. (MCNZ 234.030); ♂, BRAZIL, Santa Catarina: Timbó, 1961-05-00, Dirings col. (MCNZ 234.031).
description: Published as part of Groll, Elisa Von, 2017, Catalogue of Coleoptera type specimens housed in the collection of the Museu de Ciências Naturais, Fundação Zoobotânica do Rio Grande do Sul, Brazil, pp. 439-473 in Zootaxa 4318 (3) on page 457, DOI: 10.11646/zootaxa.4318.3.2, http://zenodo.org/record/887750
Strumigenys baudueri, a second species of this cryptic ant genus reported from South Tyrol (Italy)
Creators: name: Nalini, Elia
name: Rosso, Enrico
name: Plunger, Julia
name: Guariento, Elia
Publisher: name: Zenodo
Year: 2024

description: Strumigenys baudueri (Emery, 1875) is reported for the first time from South Tyrol, Italy. Workers from two locations were captured from soil core samples using the Berlese method. The individuals originated from a cultivated vineyard and a dry grassland of low altitude in the Adige / Etsch Valley and were previously misidentified and reported as Strumigenys argiola (Emery, 1869).
Hovorelus splendidus Galileo & Monne 2003
Creators: name: Groll, Elisa Von
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Hovorelus
Hovorelus splendidus

description: Hovorelus splendidus Galileo & Monné, 2003
Galileo & Monné, 2003:39, fig. 1.
Paratypes: ♂, PERU, Junín: Satipo, 1949, C. Seabra col. (MCNZ 234.025); ♀, 1942, J. M. Bosq col. (MCNZ 234.026).
description: Published as part of Groll, Elisa Von, 2017, Catalogue of Coleoptera type specimens housed in the collection of the Museu de Ciências Naturais, Fundação Zoobotânica do Rio Grande do Sul, Brazil, pp. 439-473 in Zootaxa 4318 (3) on page 457, DOI: 10.11646/zootaxa.4318.3.2, http://zenodo.org/record/887750
Additional file 1: of Control of cardiovascular risk factors and its determinants in the general population– findings from the STAAB cohort study
Creators: name: Tiffe, Theresa
name: Wagner, Martin
name: Rücker, Viktoria
name: Morbach, Caroline
name: Gelbrich, Götz
name: Störk, Stefan
name: Heuschmann, Peter
Publisher: name: Figshare
Year: 2017
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Developmental Biology
subject: Marine Biology

description: Table S1. Definition of uncontrolled cardiovascular risk factors. Definition of the six uncontrolled cardiovascular risk factors (blood pressure, glycemic control, LDL cholesterol, tabaco abuse, physically inactive, overweight) and their subgroups (PDF 337kb)
MOESM4 of Purification of target proteins from intracellular inclusions mediated by intein cleavable polyhydroxyalkanoate synthase fusions
Creators: name: Jinping Du
name: Rehm, Bernd
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Virology

description: Additional file 4: Figure S4. SDS-PAGE analysis for PHA synthase-Intein-GFP beads / eluted GFP from two rounds of 16-h cleavage. Lane 1, Molecular weight marker; Lane 2, Beads pre cleavage; Lane 3, Beads post 1st cleavage; Lane 4, Beads post 2nd cleavage; Lane 5, GFP eluted from 1st cleavage; Lane 6, GFP eluted from 2nd cleavage.
Additional file 2: of Measuring what matters to rare disease patients – reflections on the work by the IRDiRC taskforce on patient-centered outcome measures
Creators: name: Morel, Thomas
name: Cano, Stefan
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Mixed Methods Research & Rasch Measurement Theory – ‘Le mieux est l’ennemi du bien’. (DOCX 58 kb)
Additional file 8: Figure S3. of Genome-wide identification and expression analysis of calmodulin-like (CML) genes in Chinese cabbage (Brassica rapa L. ssp. pekinensis)
Creators: name: Shanshan Nie
name: Minjuan Zhang
name: Lugang Zhang
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Differential expression patterns of BrCML genes under low temperature stress. ‘Heading’: the group with a constant 25 °C temperature; ‘non-heading’: the group with a 4 °C low temperature treatment. (PDF 407 kb)
Additional file 2: of Measuring what matters to rare disease patients – reflections on the work by the IRDiRC taskforce on patient-centered outcome measures
Creators: name: Morel, Thomas
name: Cano, Stefan
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Infectious Diseases
subject: FOS: Health sciences

description: Mixed Methods Research & Rasch Measurement Theory – ‘Le mieux est l’ennemi du bien’. (DOCX 58 kb)
Additional file 2: of Control of cardiovascular risk factors and its determinants in the general population– findings from the STAAB cohort study
Creators: name: Tiffe, Theresa
name: Wagner, Martin
name: Rücker, Viktoria
name: Morbach, Caroline
name: Gelbrich, Götz
name: Störk, Stefan
name: Heuschmann, Peter
Publisher: name: Figshare
Year: 2017
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: Table S2. Sensitivity analysis according to sex. Odds ratios (OR) (95%-CI) for 3–6 (referent: 0–2) insufficiently controlled cardiovascular risk factors adjusted for sociodemographic status stratified by sex (PDF 343 kb)
Modeling Project Management through Charters
Creators: name: Naydan, Mary
name: Wieringa, Jeri E.
Publisher: name: Zenodo
Year: 2024
Subjects: project charters
research software engineering
project management

description: This presentation was accepted and presented as part of the panel on "The RSE Turn in Digital Humanities" at the DARIAH 2024 Annual Event in Lisbon, Portugal. We discuss the CDH chartering process as a key workflow for the success of digital humanities projects in a research software engineering context.
Additional file 1: Table S1. of Lava flow hazard prediction and monitoring with UAS: a case study from the 2014–2015 Pāhoa lava flow crisis, Hawai‘i
Creators: name: Turner, Nicolas
name: Perroy, Ryan
name: Hon, Ken
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: For each UAS flight the corresponding GCPs are listed that were used in processing with SfM software. Additional columns include Date of flight, number of photos captured, and the number of GCPs used in SfM processing for that flight. (PDF 45 kb)
Additional file 8: Figure S3. of Genome-wide identification and expression analysis of calmodulin-like (CML) genes in Chinese cabbage (Brassica rapa L. ssp. pekinensis)
Creators: name: Shanshan Nie
name: Minjuan Zhang
name: Lugang Zhang
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: Differential expression patterns of BrCML genes under low temperature stress. ‘Heading’: the group with a constant 25 °C temperature; ‘non-heading’: the group with a 4 °C low temperature treatment. (PDF 407 kb)
Arrhopalites caecus
Creators: name: Mayvan, Mahmood Mehrafrooz
name: Greenslade, Penelope
name: Sadeghi-Namaghi, Hussein
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Symphypleona
Arrhopalitidae
Arrhopalites
Arrhopalites caecus

description: Arrhopalites caecus (Tullberg, 1871)
– Sminthurus caecus Tullberg, 1871: 146.
GI, EA, ZA: Cox 1982; MAZ: Yahyapour et al. 2019; NK: Mehrafrooz Mayvan et al. 2021, 2022b; KS: Ghahramaninezhad et al. 2013; Kahrarian 2015.
Ecology and habitat in Iran: soil and leaf litter.
General distribution: uncertain (Babenko et al. 2019).
description: Published as part of Mayvan, Mahmood Mehrafrooz, Greenslade, Penelope & Sadeghi-Namaghi, Hussein, 2023, An annotated checklist of the Collembola (Hexapoda) from Iran, pp. 1-101 in Zootaxa 5275 (1) on page 55, DOI: 10.11646/zootaxa.5275.1.1, http://zenodo.org/record/7898948
title: Lithology, microstructures, fluid inclusions, and geochemistry of rock salt and of the cap-rock contact in Oakwood dome, East Texas : significance for nuclear waste storage
Creators: name: Dix, Owen R.
Publisher: name: University of Texas at Austin. Bureau of Economic Geology
Year: 1982
Subjects: subject: Radioactive waste disposal -- Texas
subject: Salt domes -- Texas

description: To obtain a print version of this publication visit: https://store.beg.utexas.edu/ and search for: RI0120. Project funded by U.S. Dept. of Energy under contract no. DE-AC97-80ET-46617 (formerly contract no. DE-AC97-79ET-46605)
description: Oakwood salt dome in Leon and Freestone Counties, Texas, has a core composed of a diapiric salt stock at a depth of 355 m. A vertical borehole in the center of the salt stock yielded 57.3 m of continuous rock-salt core overlain by 137 m of anhydrite-calcite cap rock. The lower 55.3 m of rock salt exhibits a strong, penetrative schistosity and parallel cleavage dipping at 30 to 40 and more than 60 variably dipping layers of disseminated anhydrite. Anhydrite constitutes 1.3 0.7 percent of the rock-salt core. The upper 2 m of rock salt is unfoliated, comprising a lower 1.4-m interval of medium-grained granoblastic rock salt and an upper 0.6-m interval of coarse-grained granoblastic rock salt. An abrupt, cavity-free contact separates rock salt from laminated cap rock consisting of granoblastic-polygonal anhydrite virtually devoid of halite or pore space. Microstructures and concentration gradients of fluid inclusions suggest that the unfoliated rock salt at the crest of the salt stock was once strongly foliated, but that this fabric was destroyed by solid-state recrystallization. Downward movement of brine from the rock-salt - cap-rock contact was apparently accompanied by two recrystallization fronts. Dissolution of halite at the contact released disseminated anhydrite that presumably accumulated as sand on the floor of the dissolution cavity. Renewed rise of the salt stock closed the cavity, and the anhydrite sand was accreted against the base of the cap rock. Much, if not all, of the lamination in the 80 m of anhydrite cap rock may result from cycles of dissolution, recrystallization, and upward movement in the salt stock, followed by accretion of base of the cap rock. These processes, which are strongly influenced by fluids, act both to breach waste repositories and to geologically isolate them. Despite repeated attrition and uplift of the salt stock, the geologic system has the ability to offset, at least partially, these negative processes by self-sealing and recovery.
Oideterus dichotomus
Creators: name: Groll, Elisa Von
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Oideterus
Oideterus dichotomus

description: Oideterus dichotomus (Galileo, 1987)
Galileo, 1987b:565 (Udeterus); Monné, 2012:126 (comb. nov.).
Paratypes: ♂, EQUADOR, Pichincha: San Domingos de Los Colorados, III.1982, K. E. Huedepohl col. (MCNZ 122.149); 2♀, VI.1982, K. E. Huedepohl col (MCNZ 122.148, 122.150).
description: Published as part of Groll, Elisa Von, 2017, Catalogue of Coleoptera type specimens housed in the collection of the Museu de Ciências Naturais, Fundação Zoobotânica do Rio Grande do Sul, Brazil, pp. 439-473 in Zootaxa 4318 (3) on page 457, DOI: 10.11646/zootaxa.4318.3.2, http://zenodo.org/record/887750
Idiotephria evanescens
Creators: name: Beljaev, Еvgeniy A.
name: Titova, Olga L.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Geometridae
Idiotephria
Idiotephria evanescens

description: Idiotephria evanescens (Staudinger)
(Fig. 33)
Material examined. 2 ♂, S Kholmsk, 21.VI.2021, 21.V.2022.
Distribution. Russia (S RFE: SW * Sakhalin, S Kurils—Kunashir (Rybalkin et al. 2022), S Khabarovskii Krai, Primorskii Krai), Japan (Hokkaido, Honshu, Shikoku, Tsushima), South Korea.
Remarks. The finding of I. evanescens in Sakhalin significantly expands its distribution range to the northeast. Both examined specimens, as well as the moth from Kunashir (Rybalkin et al. 2022, fig. 34) possess unusually light coloration of wings, which is also occurs in the moths from Hokkaido. The known hostplant in Japan is Quercus mongolica subsp. crispula (Fagaceae), which is widely, but sparsely occurs in S Sakhalin as well.
description: Published as part of Beljaev, Еvgeniy A. & Titova, Olga L., 2023, New data on geometroid moths (Lepidoptera: Geometroidea: Uraniidae and Geometridae) from Sakhalin and Moneron islands with notes on their taxonomy distribution and ecology, pp. 1-41 in Zootaxa 5369 (1) on pages 18-19, DOI: 10.11646/zootaxa.5369.1.1, http://zenodo.org/record/10147411
Arrhopalites persicus Vargovitsh & Kahrarian 2020
Creators: name: Mayvan, Mahmood Mehrafrooz
name: Greenslade, Penelope
name: Sadeghi-Namaghi, Hussein
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Symphypleona
Arrhopalitidae
Arrhopalites
Arrhopalites persicus

description: Arrhopalites persicus Vargovitsh & Kahrarian, 2020
– Arrhopalites persicus Vargovitsh & Kahrarian, 2020: 339.
KS: Vargovitsh & Kahrarian 2020.
Ecology and habitat in Iran: soil of oak forest.
General distribution: species possibly endemic to Iran (Vargovitsh & Kahrarian 2020).
Genus Pygmarrhopalites Vargovitsh, 2009
description: Published as part of Mayvan, Mahmood Mehrafrooz, Greenslade, Penelope & Sadeghi-Namaghi, Hussein, 2023, An annotated checklist of the Collembola (Hexapoda) from Iran, pp. 1-101 in Zootaxa 5275 (1) on page 55, DOI: 10.11646/zootaxa.5275.1.1, http://zenodo.org/record/7898948
title: Regional hydrodynamics and hydrochemistry of the uranium-bearing Oakville aquifer (Miocene) of South Texas
Creators: name: Smith, Gary E.
Publisher: name: University of Texas at Austin. Bureau of Economic Geology
Year: 1982
Subjects: subject: Groundwater flow -- Texas -- Oakville Aquifer
subject: Water chemistry -- Texas -- Oakville Aquifer

description: To obtain a print version of this publication visit: https://store.beg.utexas.edu/ and search for: RI0124.
description: The Oakville Formation consists of sediments deposited by several major fluvial systems that traversed the Texas Coastal Plain during the Miocene Epoch. Facies geometry and composition, together with superimposed structure and topography, are important determinants of ground-water flow, aquifer transmissivity, and regional hydrochemical evolution. Topographically high areas along the Oakville outcrop are ground-water recharge zones. Downdip movement of ground water is deflected along strike into major incised stream valleys and modified by local ground-water pumping, resulting in discharge of Oakville water from relatively shallow sections of the aquifer. Discharge from local and intermediate-scale flow cells, as well as influx along growth faults of high-salinity water from deeper stratigraphic horizons, is readily shown by field phenomena. Introduction of exotic evolved connate waters is demonstrable by the distribution of sulfate, chloride, and reduced sulfur species. Shallow Oakville ground waters exhibit a clearly defined compositional change from predominantly sodium chloride waters in the southwest to calcium bicarbonate waters in the northeast. Redox potential (Eh) of Oakville ground water decreases from +470 mV (oxidizing) to -170 mV (reducing) with increasing depth and coincides with an increase in pH and temperature. Dissolved oxygen content exhibits an inverse relationship to Eh and reduced sulfur. Higher recharge in the northeast results in a deeper subsurface penetration of oxygenated ground waters. The regional distribution of trace amounts of uranium, molybdenum, selenium, and arsenic in Oakville ground water demonstrates a good correlation with known sites of uranium mineralization, and defines elevated trace metal contents unrelated to known uranium occurrences. These same elements exhibit an overall increased background level in the southwestern section of the study area.
Pygmarrhopalites principalis
Creators: name: Mayvan, Mahmood Mehrafrooz
name: Greenslade, Penelope
name: Sadeghi-Namaghi, Hussein
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Symphypleona
Arrhopalitidae
Pygmarrhopalites
Pygmarrhopalites principalis

description: Pygmarrhopalites principalis (Stach, 1945)
– Arrhopalites principalis Stach, 1945: 37.
MAZ: Yahyapour et al. 2019.
Ecology and habitat in Iran: soil and leaf litter.
General distribution: probably Holarctic (Babenko et al. 2019).
description: Published as part of Mayvan, Mahmood Mehrafrooz, Greenslade, Penelope & Sadeghi-Namaghi, Hussein, 2023, An annotated checklist of the Collembola (Hexapoda) from Iran, pp. 1-101 in Zootaxa 5275 (1) on page 55, DOI: 10.11646/zootaxa.5275.1.1, http://zenodo.org/record/7898948
title: Considerations in the extraction of uranium from a fresh-water aquifer-Miocene Oakville sandstone, South Texas
Creators: name: Henry, Christopher D.
Publisher: name: University of Texas at Austin. Bureau of Economic Geology
Year: 1982
Subjects: subject: Geology -- Texas

description: To obtain a print version of this publication visit: https://store.beg.utexas.edu/ and search for: RI0126. Sponsored by the U.S. Environmental Protection Agency. Grant nos. R805357010 and R805357020.
description: The Miocene Oakville Sandstone is a major aquifer and uranium host beneath the Texas Coastal Plain. In 1976, approximately 6,000 acre-ft of ground water were withdrawn from the Oakville for municipal use. An additional but unknown amount was used for drinking water in rural areas, for livestock, and for irrigation. Potential sustained yield is many times greater. Present and future uranium mining by either surface or in situ methods could affect the availability and quality of Oakville ground water unless the mining is designed properly. This report discusses possible effects of mining, potential natural mitigation of these effects, and approaches to minimizing the impact of mining on the aquifer system. Conclusions are based on results presented in a series of reports, cited in following sections of this report, on physical stratigraphy, hydrology, and geochemistry of the Oakville Sandstone. Both solution and surface mining may affect the availability of ground water by altering recharge characteristics and permeability. Because the volume of the aquifer affected by mining is small compared with its total volume, availability of Oakville ground water will probably not be reduced significantly, except in wells immediately adjacent to a mine. Mining may affect the quality of ground water by introducing chemicals that are not indigenous to the aquifer or by inducing chemical reactions that do not occur naturally or that occur at much slower rates. For example, most mining companies no longer use concentrated, ammonium-based leaches because of known problems in restoring water to its original chemistry. Natural and induced release of trace elements such as molybdenum is known to occur, but the geochemical controls on mobility and potential mitigating reactions in the aquifer are poorly understood. Because the affected aquifer volume is small, any deterioration of water quality will probably be localized. Observations and recommendations are presented on (1) regional and local baseline studies, (2) determination of aquifer sensitivity, (3) methods and goals of monitoring during and after mining, and (4) need for research on poorly understood aspects of mining impact. Such impacts include chemical reactions and processes that affect the long-term release of trace elements.
Pennithera comis
Creators: name: Beljaev, Еvgeniy A.
name: Titova, Olga L.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Geometridae
Pennithera
Pennithera comis

description: Pennithera comis (Butler)
(Fig. 34)
Thera comis: Viidalepp 1977: 576 (Sakhalin); Beljaev & Mironov 2019: 263 (Sakhalin); Vasilenko & Dubatolov 2021: 258 (Yasnomorskoe).
Material examined. 1 ♂, 1 ♀, S Kholmsk, 16.IX.2017, 20.X.2022.
Distribution. Russia (S RFE: S Sakhalin, S Khabarovskii Krai, Primorskii Krai), Japan (Hokkaido, Honshu, Shikoku, Kyushu, Tsushima), South Korea,?SW China (Sichuan, Yunnan).
Remarks. We confirm the distribution of P. comis in Sakhalin. This species was referred from the island only once (Viidalepp 1977), and was omitted in subsequent publications (Viidalepp 1980; Viidalepp 1996; Mironov et al. 2008; Beljaev 2016). The host plants of the larvae are various Abies (Pinaceae). It is a late autumn species and flies from mid-September to mid-October. The distribution of P. comis in SW China needs to be confirmed.
description: Published as part of Beljaev, Еvgeniy A. & Titova, Olga L., 2023, New data on geometroid moths (Lepidoptera: Geometroidea: Uraniidae and Geometridae) from Sakhalin and Moneron islands with notes on their taxonomy distribution and ecology, pp. 1-41 in Zootaxa 5369 (1) on page 19, DOI: 10.11646/zootaxa.5369.1.1, http://zenodo.org/record/10147411
Sminthurinus aureus
Creators: name: Mayvan, Mahmood Mehrafrooz
name: Greenslade, Penelope
name: Sadeghi-Namaghi, Hussein
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Symphypleona
Katiannidae
Sminthurinus
Sminthurinus aureus

description: Sminthurinus aureus (Lubbock, 1862)
– Smynthurus aureus Lubbock, 1862: 589.
MAZ: Yahyapour & Shayanmehr 2011; Yahyapour 2012; Vahedi Moghadam et al. 2022; GI: Daghighi 2012; Daghighi et al. 2013b; NK: Mehrafrooz Mayvan et al. 2021; KU: Ahmadi 2021; Ahmadi et al. 2023.
Ecology and habitat in Iran: soil of citrus orchards and under the trees such as elm, maple, acacia, white poplar, plum and cedar.
General distribution: Palaearctic (Fjellberg 2007).
description: Published as part of Mayvan, Mahmood Mehrafrooz, Greenslade, Penelope & Sadeghi-Namaghi, Hussein, 2023, An annotated checklist of the Collembola (Hexapoda) from Iran, pp. 1-101 in Zootaxa 5275 (1) on page 56, DOI: 10.11646/zootaxa.5275.1.1, http://zenodo.org/record/7898948
title: Frio Formation of the Texas Gulf Coast Basin : depositional systems, structural framework, and hydrocarbon origin, migration, distribution, and exploration potential
Creators: name: Galloway, William E.
Publisher: name: University of Texas at Austin. Bureau of Economic Geology
Year: 1982
Subjects: subject: Gulf Coast (Tex.)

description: To obtain a print version of this publication visit: https://store.beg.utexas.edu/ and search for: RI0122. Accompanied by 19 plates.
description: The Frio Formation is one of the major Tertiary progradational wedges of the Texas Gulf Coast Basin and has yielded nearly 6 billion bbl of oil and 60trillion ft30f gas. The Frio and its updip equivalent, the Catahoula Formation, consist of deposits of two large fluvial and associated deltaic systems centered in the Houston and Rio Grande Embayments. Structures in the Houston Embayment are dominated by syndepositional deformation of underlying Jurassic salt. Mobilization of thick, undercompacted prodelta and slope muds characterized the tectonic evolution of the deltaic sequence in the Rio Grande Embayment. These two major deltaic depocenters are separated by a vertically stacked, strike-parallel barrier and strandplain system. Underlying, interbedded, and transgressive shelf, prodelta, and continental slope mudstone sequences provide principal source and sealing facies. Sparse organic geochemical data and regional thermal and compaction-history analyses show that large volumes of hydrocarbons have probably been generated within, and effectively expulsed upward and landward from, normally to moderately undercompacted sequences of these rnudstone facies. All Frio depositional systems contain economically significant, geologically defined hydrocarbon producing plays. Volume, production style, and type of hydrocarbon within each of 10 recognized plays reflect source-rock quality and type, differing compaction and pore-fluid-migration history, and reservoir and trap configurations characteristic of each depositional system. Analysis of volumetric, historical, and geological relationships for production and discovery within each play provides a basis for estimating the undiscovered hydrocarbon resource potential as well as for assigning that potential to specific geographic and stratigraphic subdivisions of the depositional basin.
HBx-induced DNMT3A mediated UNC13D methylation aggravates liver fibrosis by regulating the liver microenvironment
Creators: name: Zhai, Aixia
Publisher: name: figshare
Year: 2025
Subjects: classificationCode: 310103
subject: Cell metabolism
classificationCode: 310106
subject: Enzymes

description: Chronic hepatitis B virus (HBV) infection is the main etiology of liver fibrosis (LF), leading to cirrhosis and liver tumors. HBV-infected hepatocytes activate hepatic stellate cells (HSCs) through microenvironment, but the mechanism remains unclear. In this study, we discovered that DNMT3A expression increased in HBV-infected liver tissue. After constructing 7 HBV-coding protein plasmids, it was discovered that the HBV X protein (HBx) mostly increased the expression of DNMT3A. The reduced representation bisulfite sequencing (RRBS) and RNA-sequencing (RNA-Seq) data demonstrated an increase in genome-wide methylation. And UNC13D expression was decreased as a result of methylation at the promoter CpG site. The lower expression of UNC13D makes HepG2 cells more sensitive to activating the interferon response cGAMP interactor 1 (STING) signaling pathway, which enhances TBK-1 phosphorylation. Furthermore, HepG2 and Hep3B cells overexpressing DNMT3A were constructed using lentivirus, and the culture supernatant was collected to provide conditioned medium for further culture with LX-2 cells. The results showed that LX-2 cells were significantly activated. Decitabine, which targets DNMT3A, can effectively reverse the activation of LX-2 cells. In summary, this study revealed that HBV-infected hepatocytes alter the liver microenvironment through the DNMT3A/UNC13D/STING axis, promoting HSCs activation and leading to liver fibrosis. Targeting DNMT3A could be a promising therapeutic strategy in reversing LF.
HBx-induced DNMT3A mediated UNC13D methylation aggravates liver fibrosis by regulating the liver microenvironment
Creators: name: Zhai, Aixia
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 310103
subject: Cell metabolism
classificationCode: 310106
subject: Enzymes

description: Chronic hepatitis B virus (HBV) infection is the main etiology of liver fibrosis (LF), leading to cirrhosis and liver tumors. HBV-infected hepatocytes activate hepatic stellate cells (HSCs) through microenvironment, but the mechanism remains unclear. In this study, we discovered that DNMT3A expression increased in HBV-infected liver tissue. After constructing 7 HBV-coding protein plasmids, it was discovered that the HBV X protein (HBx) mostly increased the expression of DNMT3A. The reduced representation bisulfite sequencing (RRBS) and RNA-sequencing (RNA-Seq) data demonstrated an increase in genome-wide methylation. And UNC13D expression was decreased as a result of methylation at the promoter CpG site. The lower expression of UNC13D makes HepG2 cells more sensitive to activating the interferon response cGAMP interactor 1 (STING) signaling pathway, which enhances TBK-1 phosphorylation. Furthermore, HepG2 and Hep3B cells overexpressing DNMT3A were constructed using lentivirus, and the culture supernatant was collected to provide conditioned medium for further culture with LX-2 cells. The results showed that LX-2 cells were significantly activated. Decitabine, which targets DNMT3A, can effectively reverse the activation of LX-2 cells. In summary, this study revealed that HBV-infected hepatocytes alter the liver microenvironment through the DNMT3A/UNC13D/STING axis, promoting HSCs activation and leading to liver fibrosis. Targeting DNMT3A could be a promising therapeutic strategy in reversing LF.
title: Facies and stratigraphy of the San Andres formation, northern and northwestern shelves of the Midland Basin, Texas and New Mexico
Creators: name: Ramondetta, Paul J.
Publisher: name: University of Texas at Austin. Bureau of Economic Geology
Year: 1982
Subjects: subject: Geology -- Midland Basin (Texas and New Mexico)
subject: Geology -- Stratigraphic -- Permian

description: To obtain a print version of this publication visit: https://store.beg.utexas.edu/ and search for: RI0128.
description: The San Andres Formation on the Northern and Northwestern Shelves of the Midland Basin is a progradational stratigraphic unit consisting predominantly of carbonate facies. Lithofacies include dolomite, laminated anhydrite and dolomite, massive bedded anhydrite, limestone, salt, and red beds. These lithofacies represent depositional environments that include deep-water outer shelf, shallow-water inner shelf, shallow-water to emergent shoals, and a sabkha complex that comprises intertidal to supratidal algal mud flats, hypersaline lagoons or brine pans, and terrigenous mud flats. Deposition was cyclic; a cycle began with a transgression followed by a gradual shoaling-upward sequence. Cycles commonly terminated with subaerial exposure before renewed transgression initiated a new cycle. Much of the dolomitization probably occurred during periods of subaerial exposure in schizohaline environments. Likewise, porosity was probably also developed during subaerial exposure. Surface topography probably exerted considerable control on dolomitization and porosity development. Additional diagenetic alteration of carbonates may have occurred as a result of an influx of hypersaline brine. San Andres reservoirs of the Northern and Northwestern Shelves yielded 12.7 percent of the total oil production for the State of Texas in 1980. Trapping mechanisms for the oil are both structural and stratigraphic. Maps and cross sections in this report document the nature of these mechanisms. Large volumes of oil are trapped in a discontinuous, structurally high, and stratigraphically thin belt that rims the deep northern Midland Basin and that overlies older shelf margins. Porosity zones thin updip from this belt; source rocks are subjacent to this belt of porosity. Additional oil is trapped in a series of steplike, updip porosity pinch-outs exhibiting little or nonstructural control. Regional porosity pinch-outs control the northern limits of oil production in the Northern and Northwestern Shelves of Texas and eastern New Mexico.
Sminthurinus bimaculatus Axelson 1902
Creators: name: Mayvan, Mahmood Mehrafrooz
name: Greenslade, Penelope
name: Sadeghi-Namaghi, Hussein
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Symphypleona
Katiannidae
Sminthurinus
Sminthurinus bimaculatus

description: Sminthurinus bimaculatus Axelson, 1902
– Sminthurinus igniceps var. bimaculata Axelson, 1902: 110.
GI: Cox 1982.
Ecology and habitat in Iran: soil and leaf litter.
General distribution: Palaearctic (Fjellberg 2007).
description: Published as part of Mayvan, Mahmood Mehrafrooz, Greenslade, Penelope & Sadeghi-Namaghi, Hussein, 2023, An annotated checklist of the Collembola (Hexapoda) from Iran, pp. 1-101 in Zootaxa 5275 (1) on page 56, DOI: 10.11646/zootaxa.5275.1.1, http://zenodo.org/record/7898948
Eulithis testata
Creators: name: Beljaev, Еvgeniy A.
name: Titova, Olga L.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Geometridae
Eulithis
Eulithis testata

description: Key to Eulithis testata and Eulithis achatinellaria by wing pattern
1. On forewing on upper side apical white oblique stroke (a remnant of the submarginal line) does not touch postmedial line, if (rarely) touches, it is reaches vein M2; on underside postmedial line vein M2 is straight. On hindwing on upper side submarginal line is almost smooth or slightly wavy, on underside—smooth................................... E. testata (Fig. 36).
- On forewing on upper side apical white oblique stroke is merged with the postmedial line at vein M1; on underside postmedial line before vein M2 is arched inward. On the hindwing on upper and under sides the submarginal line is distinctly toothed on veins M3-Cu2.................................................................... E. achatinellaria (Fig. 35).
description: Published as part of Beljaev, Еvgeniy A. & Titova, Olga L., 2023, New data on geometroid moths (Lepidoptera: Geometroidea: Uraniidae and Geometridae) from Sakhalin and Moneron islands with notes on their taxonomy distribution and ecology, pp. 1-41 in Zootaxa 5369 (1) on page 20, DOI: 10.11646/zootaxa.5369.1.1, http://zenodo.org/record/10147411
title: Ground-water hydraulics and hydrochemical facies in Eocene aquifers of the East Texas Basin
Creators: name: Fogg, Graham E.
Publisher: name: University of Texas at Austin. Bureau of Economic Geology
Year: 1982
Subjects: subject: Aquifers -- Texas
subject: Groundwater -- Texas

description: To obtain a print version of this publication visit: https://store.beg.utexas.edu/ and search for: RI0127.
description: Eocene stratigraphic units in the East Texas Basin are composed of a thick sedimentary sequence (approximately 2,000 ft [600 m]) of fresh-water aquifers and aquitards covering an area of approximately 15,000 mi2 (51,000 km2). Analysis of abundant data on hydraulic head, pressure, and water chemistry from water wells tapping the Wilcox, Carrizo, and Queen City aquifers reveals the regional ground-water circulation patterns, locations and mechanisms of major recharge and discharge areas, and evolution of ground-water chemistry. The Queen City aquifer is primarily a water-table (unconfined) system in which effects of topography create a series of local ground-water basins. The Wilcox-Carrizo aquifer system includes (1) an artesian (confined) section that is separated from the Queen City by the Reklaw Formation, a leaky aquitard, and (2) a water-table (unconfined) system where the Wilcox-Carrizo crops out along the west, north, and east margins of the basin. Structure and topography are major controls on ground-water circulation in the Wilcox-Carrizo. A structural ridge in the Wilcox-Carrizo corresponds roughly to a ground-water divide that separates a southward component of flow from one that is directed northeastward toward the Texas-Louisiana border. Topographically controlled vertical leakage between the Queen City and Wilcox-Carrizo aquifer systems affects circulation in the Wilcox-Carrizo. The vertical head differentials and the distribution of flowing wells indicate downward leakage over most of the basin and upward leakage only beneath the Trinity and Sabine Rivers. Similarly, pressure-versus-depth data from the Wilcox-Carrizo indicate a predominantly downward component of vertical flow that intensifies toward topographically higher areas and reverses direction beneath the Trinity River. As ground water flows from outcrop down the hydraulic gradient into the artesian part of the Wilcox-Carrizo aquifer, it is consistently altered chemically from an acidic oxidized calcium-magnesium-bicarbonate sulfate water to a basic reduced sodium bicarbonate water. This change in the water chemistry is predominantly controlled by two reactions: calcite dissolution and cation exchange with montmorillonitic clays. Water samples with anomalous chemical composition (compared with regional chemistry) indicate salt dome dissolution or anomalous hydrologic conditions, such as relatively high rates of recharge to the artesian part of the Wilcox-Carrizo through leaky aquitards.�
Sminthurinus elegans
Creators: name: Mayvan, Mahmood Mehrafrooz
name: Greenslade, Penelope
name: Sadeghi-Namaghi, Hussein
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Collembola
Symphypleona
Katiannidae
Sminthurinus
Sminthurinus elegans

description: Sminthurinus elegans (Fitch, 1863)
– Sminthurus elegans Fitch, 1863: 657.
MAZ: Cox 1982; Yahyapour & Shayanmehr 2011; Yahyapour 2012; Yoosefi Lafooraki 2014; Mehrafrooz Mayvan et al. 2015a; Yoosefi Lafooraki & Shayanmehr 2015b; Ghasemi Cherati 2017; GO: Falahati et al. 2013b; KBH: Falahati et al. 2013c; KS: Ghahramaninezhad et al. 2013; Kahrarian 2015; KE: Abdolalizadeh 2018; Abdolalizadeh et al. 2019; LO: Moradi et al. 2018, 2019; TE: Moravvej 2003; Qazi & Shayanmehr 2016b; NK: Mehrafrooz Mayvan et al. 2021.
Ecology and habitat in Iran: soil and leaf litter under cypress trees and moss on timbers.
General distribution: Holarctic with some records from the southern hemisphere (Babenko et al. 2019).
description: Published as part of Mayvan, Mahmood Mehrafrooz, Greenslade, Penelope & Sadeghi-Namaghi, Hussein, 2023, An annotated checklist of the Collembola (Hexapoda) from Iran, pp. 1-101 in Zootaxa 5275 (1) on page 56, DOI: 10.11646/zootaxa.5275.1.1, http://zenodo.org/record/7898948
title: Deep brine aquifers in the Palo Duro Basin : regional flow and geochemical constraints
Creators: name: Bassett, R. L. (Randy L.), 1948-
Publisher: name: University of Texas at Austin. Bureau of Economic Geology
Year: 1983
Subjects: subject: Aquifers -- Texas -- Palo Duro Basin
subject: Salt deposits -- Texas -- Palo Duro Basin

description: To obtain a print version of this publication visit: https://store.beg.utexas.edu/ and search for: RI0130.
description: Geologic characterization of evaporite deposits as potential host rocks for burial of radioactive waste must include hydrogeologic investigations at both local and regional scales. The Palo Duro and Dalhart Basins of Texas contain candidate salt deposits that are underlain by shelf carbonates and fan-delta sandstones. These basins are ancient intracratonic elements exhibiting regional eastward flow in the deep brine aquifers. Pressures in these aquifers are "subnormal"; however, the major component of flow appears to be parallel to bedding, owing to the low permeability of the overlying evaporite strata in the central part of the basin. Salinity values computed from geophysical logs or obtained from chemical analyses indicate only small aberrations from a regional average salinity for brines in carbonate rocks and sandstones of Late Pennsylvanian and Early Permian age. Brine composition is derived by reaction with the host rock, obtaining salinity primarily from evaporite facies and, at present, apparently follows the calcite phase boundary. Brines may also be near equilibrium with anhydrite except in regions where sulfate reduction has generated hydrogen sulfide. Evidence of ion exchange is tenuous; however, clastic sediments predominate in the western part of the basin, early in the flow path, and a significant reduction in the molar ratio of sodium to chloride is observed in many samples. Substantial outgassing of carbon dioxide (CO2) and oxidation of ferrous iron appear to have occurred as the samples were collected by industry during wildcat drilling. Mass transfer computer programs have been used to determine the most probable in situ brine composition. Support for the validity of the computed equilibrium state is the correlation between the values of partial pressure of carbon dioxide (Pco,) calculated for the brines and the PCO2 observed in adjacent natural gas reservoirs.
title: Geology and Engineering Characteristics of Selected Low-Permeability Gas Sandstones: A National Survey
Creators: name: Finley, Robert J.
Publisher: name: University of Texas at Austin. Bureau of Economic Geology
Year: 1984
Subjects: subject: geology
subject: sandstone

description: To obtain a print version of this publication visit: https://store.beg.utexas.edu/ and search for: RI0138.
description: Thirty-one low-permeability gas-bearing sandstones in 15 sedimentary basins were surveyed to delineate the major depositional systems and associated facies of each stratigraphic unit. The depositional system of each unit provides a basis of comparison between formations of different ages in different structural and sedimentary settings. Information as compiled on general attributes, economic factors, geologic parameters of the basin or trend, geologic and engineering parameters of the stratigraphic unit, and operating conditions at each formation or member. Results of this survey can be applied elsewhere to exploration of tight gas sandstone trends in other stratigraphic units with similar depositional systems. Tight gas sandstones reviewed here have blanket geometries and produce or could produce from strata having in situ permeabilities of 0.1 md or less, although gas may also be contained in more permeable horizons of the sandstones. Reservoirs vary from extensively developed gas plays (Clinton-Medina sandstone, Appalachian Basin) to active gas plays (Corcoran and Cozzette Sandstones, Piceance Creek Basin) to sparsely drilled units (Blair Formation, Eastern Greater Green River Basin).