cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 3: of Reporting items for systematic reviews and meta-analyses of acupuncture: the PRISMA for acupuncture checklist
Creators: name: Wang, Xiaoqin
name: Chen, Yaolong
name: Liu, Yali
name: Yao, Liang
name: Estill, Janne
name: Bian, Zhaoxiang
name: Wu, Taixiang
name: Shang, Hongcai
name: Lee, Myeong
name: Wei, Dang
name: Tian, Jinhui
name: Ma, Bin
name: Wang, Yongfeng
name: Tian, Guihua
name: Yang, Kehu
Publisher: name: figshare
Year: 2019
Subjects: Medicine
Developmental Biology
Science Policy

description: Examples of reporting items in systematic reviews for Acupuncture. (DOCX 278 kb)
Forecasting NIFTY 50 benchmark Index using Seasonal ARIMA time series models
Creators: name: Tewari, Amit
Publisher: name: arXiv
Year: 2020
Subjects: subject: Statistical Finance (q-fin.ST)
subject: Machine Learning (cs.LG)
subject: Applications (stat.AP)
subject: Machine Learning (stat.ML)
subject: FOS: Economics and business
subject: FOS: Computer and information sciences

description: This paper analyses how Time Series Analysis techniques can be applied to capture movement of an exchange traded index in a stock market. Specifically, Seasonal Auto Regressive Integrated Moving Average (SARIMA) class of models is applied to capture the movement of Nifty 50 index which is one of the most actively exchange traded contracts globally [1]. A total of 729 model parameter combinations were evaluated and the most appropriate selected for making the final forecast based on AIC criteria [8]. NIFTY 50 can be used for a variety of purposes such as benchmarking fund portfolios, launching of index funds, exchange traded funds (ETFs) and structured products. The index tracks the behaviour of a portfolio of blue chip companies, the largest and most liquid Indian securities and can be regarded as a true reflection of the Indian stock market [2].
Additional file 2 of AMLVaran: a software approach to implement variant analysis of targeted NGS sequencing data in an oncological care setting
Creators: name: Wünsch, Christian
name: Banck, Henrik
name: Müller-Tidow, Carsten
name: Dugas, Martin
Publisher: name: figshare
Year: 2020
Subjects: subject: Space Science
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer

description: Additional file 2 A PDF document, giving basic installation and usage instructions for the software.
Pseudarchaster parelii
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Paxillosida
Pseudarchasteridae
Pseudarchaster
Pseudarchaster parelii

description: hystrix Perrier, 1894, Astrogonium
Astrogonium hystrix Perrier, 1894: 345, pl. 23, fig. 3, pl. 24, fig. 2.
Pseudarchaster parelii ‒ Clark & Downey 1992: 264.
CURRENT STATUS. — Pseudarchaster parelii (Düben & Koren, 1846).
TYPE MATERIAL. — Morocco • holotype; station 45; off coast of Morocco; Talisman expedition; 1883; 29°08’N, 14°46’W; depth 840 m; MNHN-IE-2014-130.
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on page 290, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
Local thermal equilibrium and ideal gas Stephani universes
Creators: name: Coll, Bartolomé
name: Ferrando, Joan Josep
Publisher: name: arXiv
Year: 2004
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: The Stephani universes that can be interpreted as an ideal gas evolving in local thermal equilibrium are determined. Five classes of thermodynamic schemes are admissible, which give rise to five classes of regular models and three classes of singular models. No Stephani universes exist representing an exact solution to a classical ideal gas (one for which the internal energy is proportional to the temperature). But some Stephani universes may approximate a classical ideal gas at first order in the temperature: all of them are obtained. Finally, some features about the physical behavior of the models are pointed out.
description: 20 pages
Additional file 4 of Repression of ZNFX1 by LncRNA ZFAS1 mediates tobacco-induced pulmonary carcinogenesis
Creators: name: Xi, Sichuan
name: Shan, Jigui
name: Wu, Xinwei
name: Wang, Haitao
name: Zhang, Mary R.
name: Oyetunji, Shakirat
name: Xu, Hong
name: Xiao, Zuoxiang
name: Tolunay, Tuana
name: Carr, Shamus R.
name: Hoang, Chuong D.
name: Schrump, David S.
Publisher: name: figshare
Year: 2025
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Supplementary material 4: S4. (A) qRT-PCR analysis of ZFAS1 expression in NREC and lung cancer cells exhibiting overexpression of ZFAS1 relative to vector controls. (B) qRT-PCR analysis of ZFAS1 expression in NREC and lung cancer cells before and after ZFAS1 knockdown relative to vector controls. (C, D) Densitometry of Fig. 3B and D, respectively. *p < 0.05; **p < 0.01.
Equivariant $\mathcal{O}_2$-absorption theorem for exact groups
Creators: name: Suzuki, Yuhei
Publisher: name: arXiv
Year: 2020
Subjects: subject: Operator Algebras (math.OA)
subject: Dynamical Systems (math.DS)
subject: Group Theory (math.GR)
subject: FOS: Mathematics

description: We show that, up to strong cocycle conjugacy, every countable exact group admits a unique equivariantly $\mathcal{O}_2$-absorbing, pointwise outer action on the Cuntz algebra $\mathcal{O}_2$ with the quasi-central approximation property (QAP). In particular, we establish the equivariant analogue of the Kirchberg $\mathcal{O}_2$-absorption theorem for these groups.
description: 15 pages, small corrections, to appear in Compositio Mathematica
XMM-Newton Observations of the Perseus Cluster II: Evidence for Gas Motions in the Core
Creators: name: Churazov, E.
name: Forman, W.
name: Jones, C.
name: Sunyaev, R.
name: Böhringer, H.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The 5-9 keV spectrum of the inner ~100 kpc of the Perseus cluster measured by XMM-Newton can be well described by an optically thin plasma emission model as predicted by the APEC code, without any need for invoking a strong Ni overabundance or the effects of resonant scattering. For the strongest 6.7 keV line of He-like iron, the optical depth of the cluster, calculated using observed density, temperature and abundance profiles, is of order 3. The lack of evidence for resonant scattering effects implies gas motion in the core with a range in velocities of at least half of the sound velocity. If this motion has the character of small scale turbulence, then its dissipation would provide enough energy to compensate for radiative cooling of the gas. The activity of the supermassive black hole at the center of the cluster may be the driving force of the gas motion.
description: 8 pages, 7 figures; Accepted for publication in MNRAS
Welfia , Wendland 1869
Creators: name: Henderson, Andrew
name: Villalba, Isabel
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Arecales
Arecaceae
Welfia

description: Key to the species of Welfia
 1 Fruits globose, not or scarcely dorsiventrally compressed, scarcely ridged laterally and blunt apically, with a contracted base, 25.9(24.8–28.0) mm diameter; central Peru ............................................................................ W. alfredii
 - Fruits almond–shaped, dorsiventrally compressed, ridged laterally especially toward the apex, pointed apically, without a contracted base, 15.2(10.8–18.2) mm diameter; Honduras, Nicaragua, Costa Rica, Panama, western Colombia, western Ecuador ............................................................................................................................... W. regia
description: Published as part of Henderson, Andrew & Villalba, Isabel, 2013, A revision of Welfia (Arecaceae), pp. 33-44 in Phytotaxa 119 (1) on page 35, DOI: 10.11646/phytotaxa.119.1.3, http://zenodo.org/record/5079318
Sum over topologies and double-scaling limit in 2D Lorentzian quantum gravity
Creators: name: Loll, R.
name: Westra, W.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We construct a combined non-perturbative path integral over geometries and topologies for two-dimensional Lorentzian quantum gravity. The Lorentzian structure is used in an essential way to exclude geometries with unacceptably large causality violations. The remaining sum can be performed analytically and possesses a unique and well-defined double-scaling limit, a property which has eluded similar models of Euclidean quantum gravity in the past.
description: 9 pages, 3 Postscript figures; added comments on strip versus bulk partition function
Machine Learning and value generation in Software Development: a survey
Creators: name: Akinsanya, Barakat. J.
name: Araújo, Luiz J. P.
name: Charikova, Mariia
name: Gimaeva, Susanna
name: Grichshenko, Alexandr
name: Khan, Adil
name: Mazzara, Manuel
name: N, Ozioma Okonicha
name: Shilintsev, Daniil
Publisher: name: arXiv
Year: 2020
Subjects: subject: Software Engineering (cs.SE)
subject: FOS: Computer and information sciences

description: Machine Learning (ML) has become a ubiquitous tool for predicting and classifying data and has found application in several problem domains, including Software Development (SD). This paper reviews the literature between 2000 and 2019 on the use the learning models that have been employed for programming effort estimation, predicting risks and identifying and detecting defects. This work is meant to serve as a starting point for practitioners willing to add ML to their software development toolbox. It categorises recent literature and identifies trends and limitations. The survey shows as some authors have agreed that industrial applications of ML for SD have not been as popular as the reported results would suggest. The conducted investigation shows that, despite having promising findings for a variety of SD tasks, most of the studies yield vague results, in part due to the lack of comprehensive datasets in this problem domain. The paper ends with concluding remarks and suggestions for future research.
description: To be published in the proceeding of International Conference on Software Testing, Machine Learning and Complex Process Analysis (TMPA-2019)
Astropecten polyacanthus subsp. polyacanthus Muller & Troschel 1842
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Paxillosida
Astropectinidae
Astropecten
Astropecten polyacanthus
Astropecten polyacanthus polyacanthus müller & troschel, 1842

description: hystrix Müller & Troschel, 1842, Astropecten
Astropecten hystrix Müller & Troschel, 1842: 70
Astropecten polyacanthus polyacanthus ‒ Clark 1989: 259, 266.
CURRENT STATUS. — Astropecten polyacanthus polyacanthus Müller & Troschel, 1842.
TYPE MATERIAL. — Ceylan • 2 syntypes; Reynaud leg.; 1829; MNHN-IE-2014-1 • 3 syntypes; same as for preceding; MNHN- IE-2014-606.
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on page 290, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
The Outlook for Dairy Exports under the New Japan-EU Free Trade Agreement (JEFTA)
Creators: name: Berndt, Marvin
name: Hess, Sebastian
name: Berndt, Marvin
name: Hess, Sebastian
Publisher: name: Unknown
Year: 2019
Subjects: subject: Agricultural and Food Policy
subject: International Relations/Trade
subject: Japan-EU-Free Trade Agreement
subject: JEFTA
subject: structural gravity
subject: dairy trade

description: What new export opportunities for the European dairy sector can be expected from JEFTA? Existing studies are based on computable general equilibrium (CGE) models, which have to present trade flows in a relatively aggregated manner. This study applied a structural gravity model to disaggregated dairy trade data. The results offer a forecast of the development in Japanese imports from the EU28 with regard to the 15 most important dairy products, after taking tariffs according to reduction schedules and the implementation of respective quotas under JEFTA into account. Simulated changes in trade flows ranged from 2.0 % to 73.2 % relative to the trade pattern in 2017 and depending on trade product category. The three most important products account for 82.7% of the overall increase: 040610 “Fresh cheese and curd” for 34.9 %, 040620 “All cheese, grated or powdered” for 31.2 % and 040690 “Other cheese” for 16.6 %.
Additional file 5 of Repression of ZNFX1 by LncRNA ZFAS1 mediates tobacco-induced pulmonary carcinogenesis
Creators: name: Xi, Sichuan
name: Shan, Jigui
name: Wu, Xinwei
name: Wang, Haitao
name: Zhang, Mary R.
name: Oyetunji, Shakirat
name: Xu, Hong
name: Xiao, Zuoxiang
name: Tolunay, Tuana
name: Carr, Shamus R.
name: Hoang, Chuong D.
name: Schrump, David S.
Publisher: name: figshare
Year: 2025
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Supplementary material 5: S5. (A) qRT-PCR analysis demonstrating ZNFX1 expression in NREC and lung cancer cells constitutively expressing ZNFX1 relative to vector controls. (B) Immunoblot analysis demonstrating endogenous ZNFX1 protein levels in Calu-6 and H841 cells with or without overexpression of ZNFX1. (C) qRT-PCR analysis demonstrating ZNFX1 expression in NREC and lung cancer cells following knockdown of ZNFX1 relative to vector controls. (D) Immunoblot analysis demonstrating endogenous ZNFX1 protein levels in SAEC and HBEC cells with or without depletion of ZNFX1. *p < 0.05; **p < 0.01.
Federated Transfer Learning for EEG Signal Classification
Creators: name: Ju, Ce
name: Gao, Dashan
name: Mane, Ravikiran
name: Tan, Ben
name: Liu, Yang
name: Guan, Cuntai
Publisher: name: arXiv
Year: 2020
Subjects: subject: Machine Learning (cs.LG)
subject: Signal Processing (eess.SP)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: I.5.4

description: The success of deep learning (DL) methods in the Brain-Computer Interfaces (BCI) field for classification of electroencephalographic (EEG) recordings has been restricted by the lack of large datasets. Privacy concerns associated with EEG signals limit the possibility of constructing a large EEG-BCI dataset by the conglomeration of multiple small ones for jointly training machine learning models. Hence, in this paper, we propose a novel privacy-preserving DL architecture named federated transfer learning (FTL) for EEG classification that is based on the federated learning framework. Working with the single-trial covariance matrix, the proposed architecture extracts common discriminative information from multi-subject EEG data with the help of domain adaptation techniques. We evaluate the performance of the proposed architecture on the PhysioNet dataset for 2-class motor imagery classification. While avoiding the actual data sharing, our FTL approach achieves 2% higher classification accuracy in a subject-adaptive analysis. Also, in the absence of multi-subject data, our architecture provides 6% better accuracy compared to other state-of-the-art DL architectures.
description: 6 pages, 2 figures, Accepted for IEEE Engineering in Medicine and Biology Society (EMBC) 2020 GitHub: https://github.com/DashanGao/Federated-Transfer-Leraning-for-EEG
Compton Thick AGN: the dark side of the X-ray background
Creators: name: Comastri, Andrea
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The spectrum of the hard X-ray background records the history of accretion processes integrated over the cosmic time. Several pieces of observational and theoretical evidence indicate that a significant fraction of the energy density is obscured by large columns of gas and dust. The absorbing matter is often very thick, with column densities exceeding N_H > 1.5 10^24 cm-2, the value corresponding to unity optical depth for Compton scattering. These sources are called ``Compton thick'' and appear to be very numerous, at least in the nearby universe. Although Compton thick Active Galactic Nuclei (AGN) are thought to provide an important contribution to the overall cosmic energy budget, their space density and cosmological evolution are poorly known. The properties of Compton thick AGN are reviewed here, with particular emphasis on their contributions to the extragalactic background light in the hard X-ray and infrared bands.
description: 28 pages, 10 figures. Review for "Supermassive Black Holes in the Distant Universe", Ed. A. J. Barger, Kluwer Academic
Compact microscopy systems with non-conventional optical techniques
Creators: name: Kamal, Tahseen
Publisher: name: The Australian National University
Year: 2018
Subjects: droplet lens
lenses
manufacturing
mobile health
computational
compact,
portable
low-cost
3D printed
passive droplet

description: This work has been motivated by global efforts to decentralize high performance imaging systems through frugal engineering and expansion of 3D fabrication technologies. Typically, high resolution imaging systems are confined in clinical or laboratory environment due to the limited means of producing optical lenses on the demand. The use of lenses is an essential mean to achieve high resolution imaging, but conventional optical lenses are made using either polished glass or molded plastics. Both are suited for highly skilled craftsmen or factory level production. In the first part of this work, alternative low-cost lens-making process for generating high quality optical lenses with minimal operator training have been discussed. We evoked the use of liquid droplets to make lenses. This unconventional method relies on interfacial forces to generate curved droplets that if solidified can become convex-shaped lenses. To achieve this, we studied the droplet behaviour (Rayleigh-Plateau phenomenon) before creating a set of 3D printed tools to generate droplets. We measured and characterized the fabrication techniques to ensure reliability in lens fabrication on- demand at high throughput. Compact imaging requires a compact optical system and computing unit. So, in the next part of this work, we engineered a deconstructed microscope system for field-portable imaging. Still a core limitation of all optical lenses is the physical size of lens aperture – which limits their resolution performance, and optical aberrations – that limit their imaging quality performance. In the next part of this work, we investigated use of computational optics-based optimization approaches to conduct in situ characterization of aberrations that can be digitally removed. The computational approach we have used in this work is known as Fourier Ptychography (FP). It is an emerging computational microscopic technique that combines the use of synthetic aperture and iterative optimization algorithms, offering increased resolution, at full field-of-view (FOV) and aberration-removal. In using FP techniques, we have shown measurements of optical distortions from different lenses made from droplets only. We also, investigated the limitations of FP in aberration recovery on moldless lenses. In conclusion, this work presents new opportunities to engineer high resolution imaging system using modern 3D printing approaches. Our successful demonstration of FP techniques on moldless lenses will usher new additional applications in digital pathology or low-cost mobile health.
Age Differences in the Experience of Everyday Happiness: The Role of Thinking About the Future
Creators: name: Choi, Yoonseok
name: Lay, Jennifer
name: Lu, Minjie
name: Jiang, Da
name: Peng, Matthew
name: Fung, Helene H.
name: Graf, Peter
name: Hoppmann, Christiane A.
Publisher: name: American Psychological Association
Year: 2024

description: Happiness can be experienced differently in young as compared to older adulthood, possibly due to shifts in temporal focus and differences in preferences for high versus low arousal affective states. The current project aimed to replicate initial evidence on age-related differences in the experience of happiness by investigating the positive affective correlates of everyday happiness; we further explored the role of thinking about the future in moderating such associations. We used daily life assessments from 257 participants (Mage = 48.3, SDage = 24.6; 68% female; 77% Asian (East Asian, South Asian, and Southeast Asian); 73% post-secondary educated), combining four data sets collected at two locations (Vancouver, Canada; Hong Kong) with different age samples (older and younger adults). Participants provided up to 30 repeated daily life assessments of momentary affective states and thoughts about the future, over 10 days. Results replicate previous findings by showing that happiness was more strongly associated with low-arousal positive affect and more weakly associated with high-arousal positive affect among older compared to younger adults. Engagement in thinking about the future was higher among younger compared to older adults in general, but its role in moderating the association between happiness and positive affect varying in arousal levels was confounded by the age moderation. Separate analyses conducted for each age group indicate different roles of everyday thinking about the future in shaping happiness experiences for different age groups. Age and future thinking-related contours of happiness are discussed in the context of emotional aging theories
Measuring Shapes of Galaxy Images I: Ellipticity and Orientation
Creators: name: Rahman, Nurur
name: Shandarin, Sergei F.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We suggest a set of morphological measures that we believe can help in quantifying the shapes of two-dimensional cosmological images such as galaxies, clusters, and superclusters of galaxies. The method employs non-parametric morphological descriptors known as the Minkowski functionals in combination with geometric moments widely used in the image analysis. For the purpose of visualization of the morphological properties of image contour lines we introduce three auxiliary ellipses representing the vector and tensor Minkowski functionals. We study the discreteness, seeing, and noise effects on elliptic contours as well as their morphological characteristics such as the ellipticity and orientation. In order to reduce the effect of noise we employ a technique of contour smoothing. We test the method by studying simulated elliptic profiles of toy spheroidal galaxies ranging in ellipticity from E0 to E7. We then apply the method to real galaxies, including eight spheroidals, three disk spirals and one peculiar galaxy, as imaged in the near-infrared $K_s$-band (2.2 microns) with the Two Micron All Sky Survey (2MASS). The method is numerically very efficient and can be used in the study of hundreds of thousands images obtained in modern surveys.
description: Accepted for publication in MNRAS. Revised version contains 20 pages, 17 PostScript figures. Results unchanged; high-resolution figures # 1,6,7,11,13,16 can be obtained from authors
Additional file 1 of AMLVaran: a software approach to implement variant analysis of targeted NGS sequencing data in an oncological care setting
Creators: name: Wünsch, Christian
name: Banck, Henrik
name: Müller-Tidow, Carsten
name: Dugas, Martin
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: Computational Biology

description: Additional file 1 A PDF document with additional detailed information.
Astropecten ibericus Perrier 1894
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Paxillosida
Astropectinidae
Astropecten
Astropecten ibericus

description: ibericus Perrier, 1894, Astropecten
Astropecten ibericus Perrier, 1894: 196, pl. 18, fig. 1a, b ‒ Clark & Downey 1992: 37.
CURRENT STATUS. — Astropecten ibericus Perrier, 1894.
TYPE MATERIAL. — Spain • 2 syntypes; station 2; Gulf of Cadix; Talisman expedition; 1883; 36°53’N, 10°52’W; depth 99 m; MNHN-IE-2014-163.
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on page 290, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
Accelerating Stochastic Quantum Chemistry
Creators: name: Neufeld, Verena A.
name: Thom, Alex J. W.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: The convergence of full configuration interaction quantum Monte Carlo (FCIQMC) is accelerated using a quasi-Newton propagation (QN) which can also be applied to coupled cluster Monte Carlo (CCMC). The computational scaling of this optimised propagation is O(1), keeping the additional computational cost to a bare minimum. Its effects are investigated deterministically and stochastically on a model system, the uniform electron gas, with Hilbert space size up to $10^{40}$ and shown to accelerate convergence of the instantaneous projected energy by over an order of magnitude in the FCIQMC test case. Its capabilities are then demonstrated with FCIQMC on an archetypical quantum chemistry problem, the chromium dimer, in an all-electron basis set with Hilbert space size of about $10^{22}$ yielding highly accurate FCI energies.
description: After publication, the link to the research data will be published. For now, email the authors for access to the research data
Additional file 6 of Repression of ZNFX1 by LncRNA ZFAS1 mediates tobacco-induced pulmonary carcinogenesis
Creators: name: Xi, Sichuan
name: Shan, Jigui
name: Wu, Xinwei
name: Wang, Haitao
name: Zhang, Mary R.
name: Oyetunji, Shakirat
name: Xu, Hong
name: Xiao, Zuoxiang
name: Tolunay, Tuana
name: Carr, Shamus R.
name: Hoang, Chuong D.
name: Schrump, David S.
Publisher: name: figshare
Year: 2025
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Supplementary material 6: S6. (A) Schematic depiction demonstrating the promoter region of ZNFX1 and putative enhancer region for ZFAS1. (B) Schematic distribution of 3 CpG islands in the first 2-kb promoter region of ZNFX1. (C) Schematic distribution of one CpG island in putative enhancer region for ZFAS1 (40 kb upstream of ZNFX1). (D) MeDIP analysis of DNA methylation profiles in the second CpG island proximal to TSS of ZNFX1 in SAEC and Calu-6 cells, demonstrating that CSC did not change DNA methylation in this region. (E) MeDIP analysis of DNA methylation in the CpG island within the regulatory element of ZFAS1 in SAEC and Calu-6 cells; CSC did not alter DNA methylation in this region.
Ginzburg-Landau theory of vortices in a multi-gap superconductor
Creators: name: Zhitomirsky, M. E.
name: Dao, V. -H.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: The Ginzburg-Landau functional for a two-gap superconductor is derived within the weak-coupling BCS model. The two-gap Ginzburg-Landau theory is, then, applied to investigate various magnetic properties of MgB2 including an upturn temperature dependence of the transverse upper critical field and a core structure of an isolated vortex. Orientation of vortex lattice relative to crystallographic axes is studied for magnetic fields parallel to the c-axis. A peculiar 30-degree rotation of the vortex lattice with increasing strength of an applied field observed by neutron scattering is attributed to the multi-gap nature of superconductivity in MgB2.
description: 11 pages
New D=4 gauged supergravities from N=4 orientifolds with fluxes
Creators: name: Angelantonj, C.
name: Ferrara, S.
name: Trigiante, M.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We consider classes of T_6 orientifolds, where the orientifold projection contains an inversion I_{9-p} on 9-p coordinates, transverse to a Dp-brane. In absence of fluxes, the massless sector of these models corresponds to diverse forms of N=4 supergravity, with six bulk vector multiplets coupled to N=4 Yang--Mills theory on the branes. They all differ in the choice of the duality symmetry corresponding to different embeddings of SU(1,1)\times SO(6,6+n) in Sp(24+2n,R), the latter being the full group of duality rotations. Hence, these Lagrangians are not related by local field redefinitions. When fluxes are turned on one can construct new gaugings of N=4 supergravity, where the twelve bulk vectors gauge some nilpotent algebra which, in turn, depends on the choice of fluxes.
description: 51 pages, 1 figure. Latex. Reference added. Typos corrected. Discussion on gaugings expanded
Additional file 1 of Significantly different clinical phenotypes associated with mutations in synthesis and transamidase+remodeling glycosylphosphatidylinositol (GPI)-anchor biosynthesis genes
Creators: name: Carmody, Leigh
name: Blau, Hannah
name: Danis, Daniel
name: Xingman Zhang
name: Jean-Philippe Gourdine
name: Vasilevsky, Nicole
name: Krawitz, Peter
name: Thompson, Miles
name: Robinson, Peter
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Figure S1. Venn diagram representing overlaps of genes associated with the indicated phenotypic abnormalities in the Synthesis group. Figure S2. Venn diagram representing genes found in at diseases that overlap by at least 14 phenotypic abnormalities. Table S1. Case reports included in the present work. Table S2. GPI-anchored proteins. Table S3. Phenotypic comparison of Synthesis+Transamidase (S/T) vs. Remodeling groups. Table S4. Publications curated for this work.
Relativistic gravitation theory for the MOND paradigm
Creators: name: Bekenstein, Jacob D.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The modified newtonian dynamics (MOND) paradigm of Milgrom can boast of a number of successful predictions regarding galactic dynamics; these are made without the assumption that dark matter plays a significant role. MOND requires gravitation to depart from Newtonian theory in the extragalactic regime where dynamical accelerations are small. So far relativistic gravitation theories proposed to underpin MOND have either clashed with the post-Newtonian tests of general relativity, or failed to provide significant gravitational lensing, or violated hallowed principles by exhibiting superluminal scalar waves or an \textit{a priori} vector field. We develop a relativistic MOND inspired theory which resolves these problems. In it gravitation is mediated by metric, a scalar field and a 4-vector field, all three dynamical. For a simple choice of its free function, the theory has a Newtonian limit for nonrelativistic dynamics with significant acceleration, but a MOND limit when accelerations are small. We calculate the $β$ and $γ$ PPN coefficients showing them to agree with solar system measurements. The gravitational light deflection by nonrelativistic systems is governed by the same potential responsible for dynamics of particles. To the extent that MOND successfully describes dynamics of a system, the new theory's predictions for lensing by that system's visible matter will agree as well with observations as general relativity's predictions made with a dynamically successful dark halo model. Cosmological models based on the theory are quite similar to those based on general relativity; they predict slow evolution of the scalar field. For a range of initial conditions, this last result makes it easy to rule out superluminal propagation of metric, scalar and vector waves.
description: ReVTeX and 3 eps figures; 34 pages; postpublication replacement with some corrections to Secs.IV.A+C, V and Appendix D (incorporates erratum Phys. Rev. D71, 069901(E) (2005))
The Neutron Electric Dipole Moment in the Instanton Vacuum: Quenched Versus Unquenched Simulations
Creators: name: Faccioli, P.
name: Guadagnoli, D.
name: Simula, S.
Publisher: name: arXiv
Year: 2004
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: We investigate the role played by the fermionic determinant in the evaluation of the CP-violating neutron electric dipole moment (EDM) adopting the Instanton Liquid Model. Significant differences between quenched and unquenched calculations are found. In the case of unquenched simulations the neutron EDM decreases linearly with the quark mass and is expected to vanish in the chiral limit. On the contrary, within the quenched approximation, the neutron EDM increases as the quark mass decreases and is expected to diverge as (1/m)**Nf in the chiral limit. We argue that such a qualitatively different behavior is a parameter-free, semi-classical prediction and occurs because the neutron EDM is sensitive to the topological structure of the vacuum. The present analysis suggests that quenched and unquenched lattice QCD simulations of the neutron EDM as well as of other observables governed by topology might show up important differences in the quark mass dependence, for mq < Lambda(QCD).
description: 8 pages, 3 figures, 2 tables
Cellular automaton decoders for topological quantum codes with noisy measurements and beyond
Creators: name: Vasmer, Michael
name: Browne, Dan E.
name: Kubica, Aleksander
Publisher: name: arXiv
Year: 2020
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We propose an error correction procedure based on a cellular automaton, the sweep rule, which is applicable to a broad range of codes beyond topological quantum codes. For simplicity, however, we focus on the three-dimensional (3D) toric code on the rhombic dodecahedral lattice with boundaries and prove that the resulting local decoder has a non-zero error threshold. We also numerically benchmark the performance of the decoder in the setting with measurement errors using various noise models. We find that this error correction procedure is remarkably robust against measurement errors and is also essentially insensitive to the details of the lattice and noise model. Our work constitutes a step towards finding simple and high-performance decoding strategies for a wide range of quantum low-density parity-check codes.
description: 16 pages, 10 figures, v2: published version
Additional file 1 of Efficacy of mesenchymal stem cells in animal models of lupus nephritis: a meta-analysis
Creators: name: Tianbiao Zhou
name: Chunling Liao
name: Li, Hong-Yan
name: Wenshan Lin
name: Shujun Lin
name: Hongzhen Zhong
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: The Preferred Reporting Items for systematic Reviews and Meta-Analyses (PRISMA) checklist.
Astrosarkus idipi Mah 2003
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Valvatida
Oreasteridae
Astrosarkus
Astrosarkus idipi

description: idipi Mah, 2003, Astrosarkus
Astrosarkus idipi Mah, 2003: 686, figs 1-6.
CURRENT STATUS. — Astrosarkus idipi Mah, 2003.
TYPE MATERIAL. — Réunion Island • 1 paratype; station CP 177; Marion Dufresne campaign (1982); 21°01’S, 55°10’E; depth 185- 200 m; MNHN-IE-2009-9006.
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on page 290, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
Additional file 7 of Repression of ZNFX1 by LncRNA ZFAS1 mediates tobacco-induced pulmonary carcinogenesis
Creators: name: Xi, Sichuan
name: Shan, Jigui
name: Wu, Xinwei
name: Wang, Haitao
name: Zhang, Mary R.
name: Oyetunji, Shakirat
name: Xu, Hong
name: Xiao, Zuoxiang
name: Tolunay, Tuana
name: Carr, Shamus R.
name: Hoang, Chuong D.
name: Schrump, David S.
Publisher: name: figshare
Year: 2025
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Supplementary material 7: S7. qRT-PCR analysis demonstrating that DAC increases ZNFX1 expression in lung cancer cells, not normal lung epithelia. DAC abrogates ZFAS1 overexpression-mediated repression of ZNFX1 in normal lung epithelia and lung cancer cells.
Circuit-Difference Matroids
Creators: name: Drummond, George
name: Fife, Tara
name: Grace, Kevin
name: Oxley, James
Publisher: name: arXiv
Year: 2020
Subjects: subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: 05B35

description: One characterization of binary matroids is that the symmetric difference of every pair of intersecting circuits is a disjoint union of circuits. This paper considers circuit-difference matroids, that is, those matroids in which the symmetric difference of every pair of intersecting circuits is a single circuit. Our main result shows that a connected regular matroid is circuit-difference if and only if it contains no pair of skew circuits. Using a result of Pfeil, this enables us to explicitly determine all regular circuit-difference matroids. The class of circuit-difference matroids is not closed under minors, but it is closed under series minors. We characterize the infinitely many excluded series minors for the class.
description: 11 pages
The VLA-VIRMOS Deep Field I. Radio observations probing the microJy source population
Creators: name: Ciliegi, M. Bondi. P.
name: Zamorani, G.
name: Gregorini, L.
name: Vettolani, G.
name: Parma, P.
name: de Ruiter, H.
name: Fevre, O. Le
name: Arnaboldi, M.
name: Guzzo, L.
name: Maccagni, D.
name: Scaramella, R.
name: Adami, C.
name: Bardelli, S.
name: Bolzonella, M.
name: Bottini, D.
name: Cappi, A.
name: Foucaud, S.
name: Franzetti, P.
name: Garilli, B.
name: Ilbert, S. Gwyn O.
name: Iovino, A.
name: Brun, V. Le
name: Marano, B.
name: Marinoni, C.
name: McCracken, H. J.
name: Meneux, B.
name: Pollo, A.
name: Pozzetti, L.
name: Radovich, M.
name: Ripepi, V.
name: Rizzo, D.
name: Scodeggio, M.
name: Tresse, L.
name: Zanichelli, A.
name: Zucca, E.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We have conducted a deep survey (r.m.s noise 17 microJy) with the Very Large Array (VLA) at 1.4 GHz, with a resolution of 6 arcsec, of a 1 square degree region included in the VIRMOS VLT Deep Survey. In the same field we already have multiband photometry down to I(AB)=25, and spectroscopic observations will be obtained during the VIRMOS VLT survey. The homogeneous sensitivity over the whole field has allowed to derive a complete sample of 1054 radio sources (5 sigma limit). We give a detailed description of the data reduction and of the analysis of the radio observations, with particular care to the effects of clean bias and bandwidth smearing, and of the methods used to obtain the catalogue of radio sources. To estimate the effect of the resolution bias on our observations we have modelled the effective angular-size distribution of the sources in our sample and we have used this distribution to simulate a sample of radio sources. Finally we present the radio count distribution down to 0.08 mJy derived from the catalogue. Our counts are in good agreement with the best fit derived from earlier surveys, and are about 50 % higher than the counts in the HDF. The radio count distribution clearly shows, with extremely good statistics, the change in the slope for the sub-mJy radio sources.
description: 13 pages, Accepted for publication in Astronomy & Astrophysics
Coscinasterias tenuispina
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Forcipulatida
Asteriidae
Coscinasterias
Coscinasterias tenuispina

description: inaequalis Perrier, 1894, Lytaster
Lytaster inaequalis Perrier, 1894: 98, pl. 9, fig. 1.
Coscinasterias tenuispina ‒ Clark in Clark & Mah 2001: 271.
CURRENT STATUS. — Coscinasterias tenuispina (Lamarck, 1816).
TYPE MATERIAL. — Canary Islands • 5 syntypes; station 54; Bocayana Strait; Talisman expedition; 1883; depth 30-259 m; MNHN-IE-2014-166.
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on page 290, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
Additional file 1 of Prompt Mental Health Care (PMHC): work participation and functional status at 12 months post-treatment
Creators: name: Knapstad, Marit
name: Sæther, Solbjørg
name: Hensing, Gunnel
name: Smith, Otto
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology

description: Additional file 1. Work situation.
Robust and Optimal Methods for Geometric Sensor Data Alignment
Creators: name: Campbell, Dylan John
Publisher: name: The Australian National University
Year: 2018
Subjects: computer vision
3D vision
geometric sensor data alignment
registration
point-set registration
camera pose estimation
global optimization
global optimisation
branch-and-bound
camera calibration
imaging geometry
mixture models
robust optimisation
robust optimization
sensor data representations

description: Geometric sensor data alignment - the problem of finding the rigid transformation that correctly aligns two sets of sensor data without prior knowledge of how the data correspond - is a fundamental task in computer vision and robotics. It is inconvenient then that outliers and non-convexity are inherent to the problem and present significant challenges for alignment algorithms. Outliers are highly prevalent in sets of sensor data, particularly when the sets overlap incompletely. Despite this, many alignment objective functions are not robust to outliers, leading to erroneous alignments. In addition, alignment problems are highly non-convex, a property arising from the objective function and the transformation. While finding a local optimum may not be difficult, finding the global optimum is a hard optimisation problem. These key challenges have not been fully and jointly resolved in the existing literature, and so there is a need for robust and optimal solutions to alignment problems. Hence the objective of this thesis is to develop tractable algorithms for geometric sensor data alignment that are robust to outliers and not susceptible to spurious local optima. This thesis makes several significant contributions to the geometric alignment literature, founded on new insights into robust alignment and the geometry of transformations. Firstly, a novel discriminative sensor data representation is proposed that has better viewpoint invariance than generative models and is time and memory efficient without sacrificing model fidelity. Secondly, a novel local optimisation algorithm is developed for nD-nD geometric alignment under a robust distance measure. It manifests a wider region of convergence and a greater robustness to outliers and sampling artefacts than other local optimisation algorithms. Thirdly, the first optimal solution for 3D-3D geometric alignment with an inherently robust objective function is proposed. It outperforms other geometric alignment algorithms on challenging datasets due to its guaranteed optimality and outlier robustness, and has an efficient parallel implementation. Fourthly, the first optimal solution for 2D-3D geometric alignment with an inherently robust objective function is proposed. It outperforms existing approaches on challenging datasets, reliably finding the global optimum, and has an efficient parallel implementation. Finally, another optimal solution is developed for 2D-3D geometric alignment, using a robust surface alignment measure. Ultimately, robust and optimal methods, such as those in this thesis, are necessary to reliably find accurate solutions to geometric sensor data alignment problems.
Tilting complexes for group graded self-injective algebras
Creators: name: Marcus, Andrei
name: Pan, Shengyong
Publisher: name: arXiv
Year: 2019
Subjects: subject: Representation Theory (math.RT)
subject: FOS: Mathematics

description: We construct derived equivalences between group graded self-injective algebras, starting from equivalences between their 1-components, obtained via a construction of J. Rickard and S. Al-Nofayee.
description: Comments are welcome. Fix some notions
Chiral Magnonic Edge States in Ferromagnetic Skyrmion Crystals Controlled by Magnetic Fields
Creators: name: Diaz, Sebastian A.
name: Hirosawa, Tomoki
name: Klinovaja, Jelena
name: Loss, Daniel
Publisher: name: arXiv
Year: 2019
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Achieving control over magnon spin currents in insulating magnets - where dissipation due to Joule heating is highly suppressed - is an active area of research that could lead to energy-efficient spintronics applications. However, magnon spin currents supported by conventional systems with uniform magnetic order have proven hard to control. An alternative approach that relies on topologically protected magnonic edge states of spatially periodic magnetic textures has recently emerged. A prime example of such textures is the ferromagnetic skyrmion crystal which hosts chiral edge states providing a platform for magnon spin currents. Here, we show, for the first time, an external magnetic field can drive a topological phase transition in the spin wave spectrum of a ferromagnetic skyrmion crystal. The topological phase transition is signaled by the closing of a low-energy bulk magnon gap at a critical field. In the topological phase, below the critical field, two topologically protected chiral magnonic edge states lie within this gap, but they unravel in the trivial phase, above the critical field. Remarkably, the topological phase transition involves an inversion of two magnon bands that at the $Γ$ point correspond to the breathing and anticlockwise modes of the skyrmions in the crystal. Our findings suggest that an external magnetic field could be used as a knob to switch on and off magnon spin currents carried by topologically protected chiral magnonic edge states.