cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1 of A Vibrio-based microbial platform for accelerated lignocellulosic sugar conversion
Creators: name: Woo, Sunghwa
name: Lim, Hyun Gyu
name: Han, Yong Hee
name: Park, Sungwoo
name: Noh, Myung Hyun
name: Baek, Dongyeop
name: Moon, Jo Hyun
name: Seo, Sang Woo
name: Jung, Gyoo Yeol
Publisher: name: figshare
Year: 2022
Subjects: subject: Microbiology
subject: FOS: Biological sciences

description: Additional file1 Table S1. Maximum specific growth rates and sugar consumption rates of Vibrio sp. dhg and E. coli W grown on glucose, xylose, and arabinose. Table S2. List of catabolic genes for sugar utilization in Vibrio sp. dhg. Table S3. Comparison of carbon and ATP production yields of four known xylose catabolic pathways. Table S4. Detailed stoichiometry of the xylose catabolic pathways. Table S5. Comparison of xylose utilizing strains from previous studies and VXA38 strains. Table S6. Identified mutations in the starting strain, VXA0. Table S7. Detailed information on mutations in evolved isolates. Table S8. Comparison of lactate production from lignocellulose-derived sugars. Table S9. List of strains and plasmids used in this study. Table S10. List of primers used in this study. Table S11. Detailed information on plasmid construction. Figure S1. Ratios of Vibrio and E. coli species having genes of complete xylose catabolic pathways. Figure S2. Known xylose catabolic pathways. Figure S3. Growth profiles of the VXA1-1, VXA1-2, VXA15-1, and VXA15-3 strains in xylose minimal medium. Figure S4. Sequence alignment of xylulokinase (XylB) from E. coli and Vibrio sp. dhg. Figure S5. Comparison of Km and kcat of the wild-type and mutant xylose isomerase. Figure S6. Normalized specific fluorescence values of strains expressing the xylA-sgfp fused protein with wild-type and mutant promoter and xylA coding sequence.
Review of Swarthmore College (2011): Global Nonviolent Action Database
Creators: name: Nathalie Rathkamp
Publisher: name: Zenodo
Year: 2025
Subjects: Campaigns
Change
Defense
Democracy
Economic Justice
Environment
Ethnic Identity
Human Rights
National Identity
Nonviolent Action
Peace
Protest
Third Party Nonviolent Intervention (Tpni)
Armenia
Azerbaijan
Belarus
Estonia
Georgia
Kazakhstan
Kyrgyzstan
Latvia
Lithuania
Moldova
Russia
Tajikistan
Turkmenistan
Ukraine
USSR
Uzbekistan
English

description: The Global Nonviolent Action Database is a project of the Swarthmore College. It reports on cases of nonviolent protest actions taken across the globe (100+ countries) (1), including cases dating back as far as the 12th century BCE all the way up to 2019 (Lakey 2011a). The dataset takes the form of both case studies as well as a more visual representation in the form of an interactive map (1). The researchers decided on the following definition to define what constitutes as a nonviolent action in this database: "[A] technique of struggle that goes beyond institutionalized conflict procedures like law courts and voting, procedures common in many countries.  We study the methods of protest, noncooperation, and intervention that typically heighten a conflict – and the use of these methods without the threat or use of injurious force to others.  Our definition is not located in the discourse of morality and ethics, although some people may choose to use nonviolent action for ethical reasons. Instead, we focus descriptively on what people do when they use this specific 'technique of struggle.'" (Lakey 2011c).
Of the 1.300+ total entries in this dataset, there are 40 events listed for the countries of Eastern Europe, South Caucasus and Central Asia covered by Discuss Data. As of summer 2024, it is not clear whether work on the data collection is continuing.
The data review includes a link to the official Global Nonviolent Action Database website, from which all the data as well as all information listed here is accessible. However, while the data is freely viewable on the website, it seems that the data is not available for download.
description: Published on Discuss Data, https://discuss-data.net/dataset/65010eac-7372-4bdc-918a-c447333e2018/
description: Method(s) of data collection: Desk Research, Event Data, Text Coding
Building tools to analyze FAIR for HDRL datasets (Code 670)
Creators: name: Boquet, Zach
name: Ringuette, Rebecca
name: Thomas, Brian
Publisher: name: Zenodo
Year: 2024

description: NASA policy SPD-41a requires all NASA repositories and registries to align with FAIR as described in Wilkinson et al. (2016). FAIR is a set of 15 guiding principles for data and metadata about Findability, Accessibility, Interoperability, and Reusability.  For this work, we focus on an analysis of the NASA SPASE records to determine our current level of compliance with FAIR and what needs improvement. In terms of this project, that means that we are interested in the metadata that directly supports FAIR and also determining what is present (and absent) from the records.

We analyzed the metadata for over 3000 NASA SPASE records by extracting fields of interest, storing them into a SQLite database, assessing that metadata for FAIR, and drawing insights from them. Most importantly, we found that over half of the NASA SPASE records have a FAIR score of 9/10, with an average score of 7.17/10.

Improvements based on these preliminary results have already begun! For example, the SPASE metadata model, the international metadata standard in Heliophysics, is being changed to support CC0 licenses for all NASA SPASE records.  In conclusion, this project provides the first steps into assessing the NASA SPASE records in terms of FAIR principles to provide insights on where improvements are the most impactful.  Current work aims to automatically assess the NASA data access links in those SPASE records for their ability to provide data.

 

Presentation given in NASA Code 670 Intern Presentation on July 30, 2024.
The rules of multiplayer cooperation in networks of communities
Creators: name: Pires, Diogo L.
name: Broom, Mark
Publisher: name: arXiv
Year: 2024
Subjects: subject: Populations and Evolution (q-bio.PE)
subject: Physics and Society (physics.soc-ph)
subject: FOS: Biological sciences
subject: FOS: Physical sciences

description: Community organization permeates both social and biological complex systems. To study its interplay with behavior emergence, we model mobile structured populations with multiplayer interactions. We derive general analytical methods for evolutionary dynamics under high home fidelity when populations self-organize into networks of asymptotically isolated communities. In this limit, community organization dominates over the network structure and emerging behavior is independent of network topology. We obtain the rules of multiplayer cooperation in networks of communities for different types of social dilemmas. The success of cooperation is a result of the benefits shared amongst communal cooperators outperforming the benefits reaped by defectors in mixed communities. Under weak selection, cooperation can evolve and be stable for any size (Q) and number (M) of communities if the reward-to-cost ratio (V/K) of public goods is higher than a critical value. Community organization is a solid mechanism for sustaining the evolution of cooperation under public goods dilemmas, particularly when populations are organized into a higher number of smaller communities. Contrary to public goods dilemmas relating to production, the multiplayer Hawk-Dove (HD) dilemma is a commons dilemma focusing on the fair consumption of preexisting resources. This game holds mixed results but tends to favour cooperation under larger communities, highlighting that the two types of social dilemmas might lead to solid differences in the behaviour adopted under community structure.
description: 17 pages, 3 figures, 3 tables
Additional file 1 of Minimum accepted competency examination: test item analysis
Creators: name: McCrossan, Paddy
name: Nicholson, Alf
name: McCallion, Naomi
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Additional file 1: Appendix 1: Item Discrimination Index (D) and Item Difficulty (F) for each MAC test item in each of the study groups.
Scalar induced gravitational waves in chiral scalar-tensor theory of gravity
Creators: name: Feng, Jia-Xi
name: Zhang, Fengge
name: Gao, Xian
Publisher: name: arXiv
Year: 2024
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We study the scalar induced gravitational waves (SIGWs) from a chiral scalar-tensor theory of gravity. The parity-violating (PV) Lagrangian contains the Chern-Simons (CS) term and PV scalar-tensor terms, which are built of the quadratic Riemann tensor term and first-order derivatives of a scalar field. We consider SIGWs in two cases, in which the semi-analytic expression to calculate SIGWs can be obtained. Then, we calculate the fractional energy density of SIGWs with a monochromatic power spectrum for the curvature perturbation. We find that the SIGWs in chiral scalar-tensor gravity behave differently from those in GR before and after the peak frequency, which results in a large degree of circular polarization.
description: v2, match the EPJC version
Supplementary document for Study of electronic and optical properties of CdI2 modulated by electric field: a first-principles study - 6478536.pdf
Creators: name: Bai, Xue
name: Jiang, Qi
name: Song, Pei
name: Jia, Zepeng
name: Lu, Sen
name: Gao, Zhikai
name: Lang, Shaohua
name: Hong, Cui
name: Feng, Rong
name: Liang, Zhiyong
Publisher: name: Optica Publishing Group
Year: 2025
Subjects: Uncategorized

description: data information
Additional file 2 of Minimum accepted competency examination: test item analysis
Creators: name: McCrossan, Paddy
name: Nicholson, Alf
name: McCallion, Naomi
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Additional file 2: Appendix 2: Analysis of difficult questions.
Additional file 3 of Minimum accepted competency examination: test item analysis
Creators: name: McCrossan, Paddy
name: Nicholson, Alf
name: McCallion, Naomi
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Additional file 3: Appendix 3: MAC examination.
Snake Story: Exploring Game Mechanics for Mixed-Initiative Co-creative Storytelling Games
Creators: name: Yang, Daijin
name: Kleinman, Erica
name: Troiano, Giovanni Maria
name: Tochilnikova, Elina
name: Harteveld, Casper
Publisher: name: arXiv
Year: 2024
Subjects: subject: Human-Computer Interaction (cs.HC)
subject: FOS: Computer and information sciences

description: Mixed-initiative co-creative storytelling games have existed for some time as a way to merge storytelling with play. However, modern mixed-initiative co-creative storytelling games predominantly prioritize story creation over gameplay mechanics, which might not resonate with all players. As such, there is untapped potential for creating mixed-initiative games with more complex mechanics in which players can engage with both co-creation and gameplay goals. To explore the potential of more prominent gameplay in mixed-initiative co-creative storytelling games, we created Snake Story, a variation of the classic Snake game featuring a human-AI co-writing element. To explore how players interact with the mixed-initiative game, we conducted a qualitative playtest with 11 participants. Analysis of both think-aloud and interview data revealed that players' strategies and experiences were affected by their perception of Snake Story as either a collaborative tool, a traditional game, or a combination of both. Based on these findings, we present design considerations for future development in mixed-initiative co-creative gaming.
description: To be published at the International Conference on the Foundations of Digital Games 2024
Additional file 1 of Exploring clinician perceptions of a care pathway for the management of shoulder pain: a qualitative study
Creators: name: Verville, Leslie
name: Cancelliere, Carol
name: Connell, Gaelan
name: Lee, Joyce
name: Mior, Silvano
name: Munce, Sarah
name: Kay, Robin
name: Côté, Pierre
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Science Policy
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. Interview Guide
Macroscopic Development of the Scapula in Sheep (Ovis aries) During the Last Two Trimesters of Gestation
Creators: name: Atlı, Muhammed Zahid
name: İşbilir, Fatma
name: Güzel, Barış Can
Publisher: name: Zenodo
Year: 2025

description: This study investigated the morphological and morphometric development of the fetal scapula in sheep (Ovis aries). Hamdani crossbred sheep fetuses, obtained from slaughtered healthy animals in Siirt province, were used for the study. Using a formulation, gestational ages were calculated from crown-anus distance (CRL) measurements. Following careful dissection, morphometric analyses of scapula samples were conducted utilizing ImageJ software. Key measured parameters included diagonal length (DL), dorsal scapular width (SW-d), medial scapular width (SW-m), ventral scapular width (SW-v), scapular spine length (SSL), scapular cartilage width (SCW), scapular cartilage length (SCL), fossa supraspinata width (FSSW), fossa infraspinata width (FISW), and fossa subscapularis width (FSW). Results demonstrated significant and progressive increases in scapular bone dimensions and specific morphological regions with advancing fetal age. These findings will contribute significantly to understanding prenatal ossification processes and skeletal growth dynamics in sheep. From a clinical perspective, these data will provide reference values for veterinary orthopedic evaluations and will support further studies in animal husbandry and anatomical research.
Additional file 1 of A cross-sectional study on the perceived barriers to physical activity and their associations with domain-specific physical activity and sedentary behaviour
Creators: name: Koh, Yen Sin
name: Asharani, P. V.
name: Devi, Fiona
name: Roystonn, Kumarasan
name: Wang, Peizhi
name: Vaingankar, Janhavi Ajit
name: Abdin, Edimansyah
name: Sum, Chee Fang
name: Lee, Eng Sing
name: Müller-Riemenschneider, Falk
name: Chong, Siow Ann
name: Subramaniam, Mythily
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Science Policy
subject: Sociology
subject: FOS: Sociology

description: Additional file 1: Table S1. Prevalence of perceived barriers to physical activity stratified by Sex and Age group. Table S2. Prevalence of perceived barriers to physical activity stratified by ethnicity.
Perceptions of substance-use contributing to or helping to handle psychosis-spectrum symptoms in help-seeking youth and young adults
Creators: name: Ereshefsky, Sabrina
name: Demro, Caroline
name: Wilson, Camille
name: Thompson, Elizabeth
name: Kline, Emily
name: Bussell, Kristin
name: Jameson, Nicole
name: Epstein, Gregory
name: Tsuji, Thomas
name: Reeves, Gloria
name: Schiffman, Jason
Publisher: name: F1000Research
Year: 2016

description: Psychosis-spectrum disorders are characterized, to a varying degree, by the presence of strange or unusual thoughts, feelings, or perceptual experiences. The liability of a “non-clinical psychosis phenotype” is as high as 25% in the population and indicates an increased risk of developing psychosis. Cannabis use prevalence is approximately 16% in teens and associated with initiation of other substances. Cannabis use during adolescence is thought to be a risk factor in the development of psychosis, as the adolescent brain is in a sensitive period of development. Thus, cannabis use represents an environmental risk factor of increased psychosis-risk. Most users of cannabis, though, do not develop psychosis. The potential direction of effects between cannabis and psychosis remains unclear (e.g., causes psychosis, is a coping response, shared causal third variable), as well. Etiology also points to a Gene x Environment interaction/correlation (e.g., COMT gene moderates the association; shared genetic etiology). Temporal sequence further suggests schizotypy precedes cannabis use in some cases, but not others. To date, limited research has focused on the association between psychosis-risk symptoms and perceptions of how drug use may contribute to or help symptoms. Perceptions from patients with full psychosis were reported:

“…I had these feeling, long before I started with it [cannabis]…”
“…The scenario is this: you first go crazy and you start to smoke…it’s not the origin, it is rather that you try to medicate yourself…”

Using a psychosis-spectrum and help-seeking population for comparison, this study sought to better understand the relation between cannabis use and perceptions of drug use contributing to and/or helping with strange thoughts or feelings.
Building tools to analyze FAIR for HDRL datasets (HAPI Group)
Creators: name: Boquet, Zach
name: Ringuette, Rebecca
name: Thomas, Brian
Publisher: name: Zenodo
Year: 2024

description: NASA policy SPD-41a requires all NASA repositories and registries to align with FAIR as described in Wilkinson et al. (2016). FAIR is a set of 15 guiding principles for data and metadata about Findability, Accessibility, Interoperability, and Reusability.  For this work, we focus on an analysis of the NASA SPASE records to determine our current level of compliance with FAIR and what needs improvement. In terms of this project, that means that we are interested in the metadata that directly supports FAIR and also determining what is present (and absent) from the records.

We analyzed the metadata for over 3000 NASA SPASE records by extracting fields of interest, storing them into a SQLite database, assessing that metadata for FAIR, and drawing insights from them. Most importantly, we found that over half of the NASA SPASE records have a FAIR score of 9/10, with an average score of 7.17/10.  We also tested the HAPI links in the database for data access, and found that around 67% of the 1632 links successfully retrieved data.

Improvements based on these preliminary results have already begun! For example, the SPASE metadata model, the international metadata standard in Heliophysics, is being changed to support CC0 licenses for all NASA SPASE records.  In conclusion, this project provides the first steps into assessing the NASA SPASE records in terms of FAIR principles to provide insights on where improvements are the most impactful.  Current work aims to automatically assess the NASA data access links in those SPASE records for their ability to provide data.

 

Presentation given to NASA HAPI Group on August 5, 2024.
Transport properties in non-Fermi liquid phases of nodal-point semimetals
Creators: name: Mandal, Ipsita
name: Freire, Hermann
Publisher: name: arXiv
Year: 2024
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In this review, we survey the current progress in computing transport properties in semimetals which harbour non-Fermi liquid phases. We first discuss the widely-used Kubo formalism, which can be applied to the effective theory describing the stable non-Fermi liquid phase obtained via a renormalization group procedure and, hence, is applicable for temperatures close to zero (e.g., optical conductivity). For finite-temperature regimes, which apply to the computations of the generalized DC conductivity tensors, we elucidate the memory matrix approach. This approach is based on an effective hydrodynamic description of the system, and is especially suited for tackling transport calculations in strongly-interacting quantum field theories, because it does not rely on the existence of long-lived quasiparticles. As a concrete example, we apply these two approaches to find the response of the so-called Luttinger-Abrikosov-Benelavskii phase of isotropic three-dimensional Luttinger semimetals, which arises under the effects of long-ranged (unscreened) Coulomb interactions, with the chemical potential fine-tuned to cut exactly the nodal point. In particular, we focus on the electric conductivity tensors, thermal and thermoelectric response, Raman response, free energy, entropy density, and shear viscosity.
description: typos fixed; contains results obtained in arXiv:2012.07866, arXiv:2104.07459, and arXiv:2201.04045
Thermodynamics of chaotic relaxation processes
Creators: name: Lippolis, Domenico
Publisher: name: arXiv
Year: 2024
Subjects: subject: Chaotic Dynamics (nlin.CD)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: The established thermodynamic formalism of chaotic dynamics, valid at statistical equilibrium, is here generalized to systems out of equilibrium, that have yet to relax to a steady state. A relation between information, escape rate, and the phase-space average of an integrated observable (e.g. Lyapunov exponent, diffusion coefficient) is obtained for finite time. Most notably, the thermodynamic treatment may predict the phase-space profile of any finite-time integrated observable from the leading and subleading eigenfunctions of the Perron-Frobenius/Koopman transfer operator. Examples of that equivalence are shown, and the theory is tested analytically on the Bernoulli map, while numerically on the perturbed cat map, the Hénon map, and the Ikeda map, all paradigms of chaos.
description: 18 pages, 13 figures
Supplementary document for Study of electronic and optical properties of CdI2 modulated by electric field: a first-principles study - 6478536.pdf
Creators: name: Bai, Xue
name: Jiang, Qi
name: Song, Pei
name: Jia, Zepeng
name: Lu, Sen
name: Gao, Zhikai
name: Lang, Shaohua
name: Hong, Cui
name: Feng, Rong
name: Liang, Zhiyong
Publisher: name: Optica Publishing Group
Year: 2024
Subjects: Uncategorized

description: data information
Dançaterapia e Fisioterapia: A arte em pro da reabilitação
Creators: name: Waldemar Alvarenga, Lapoente
Publisher: name: Zenodo
Year: 2025

description: Este artigo tem como objetivo discutir de que maneira a dançaterapia pode contribuir para o tratamento fisioterapêutico. Assim como a música, a dança é uma forma de arte cuja origem exata é difícil de determinar. Ela faz parte da cultura de diversas sociedades, sendo utilizada em manifestações folclóricas, religiões, rituais e celebrações. A partir da década de 1970, começou a ser explorada como uma abordagem terapêutica, promovida por mudanças pedagógicas introduzidas pela artista Maria Fux. Este estudo é uma revisão da literatura, baseada em artigos científicos coletados em fontes como a Biblioteca Cochrane, a Biblioteca Digital Brasileira de Teses e Dissertações, a Biblioteca Virtual em Saúde (BVS), ERIC, Google Acadêmico, Lilacs, Medline, PEDro e Scielo, realizado entre 07 e 11 de abril de 2025. Dentre as diferentes abordagens terapêuticas corporais, a dançaterapia se destaca como uma forma de expressão não verbal que permite a comunicação de sentimentos e pensamentos, além de atender ao desejo de movimento. O caráter lúdico dessa prática contribui para a melhoria de diversas condições neurológicas e outras comorbidades. Em conclusão, a dançaterapia, em conjunto com a fisioterapia, pode ser uma ferramenta extremamente benéfica para a recuperação de pacientes em tratamento fisioterapêutico. Independentemente do estilo de dança ou técnica empregada, é claro que a dança funciona como um recurso integrativo e complementar, proporcionando uma variedade de vantagens para a saúde.

Palavras chave: Dançafisio. Dançaterapia. Dança na Cura. Fisiodance. Fisioterapia.
Additional file 1 of Signals of increasing co-use of stimulants and opioids from online drug forum data
Creators: name: Sarker, Abeed
name: Al-Garadi, Mohammed Ali
name: Ge, Yao
name: Nataraj, Nisha
name: Jones, Christopher M.
name: Sumner, Steven A.
Publisher: name: figshare
Year: 2022
Subjects: subject: Pharmacology
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1: Appendix.
PASA: Attack Agnostic Unsupervised Adversarial Detection using Prediction & Attribution Sensitivity Analysis
Creators: name: Bhusal, Dipkamal
name: Alam, Md Tanvirul
name: Veerabhadran, Monish K.
name: Clifford, Michael
name: Rampazzi, Sara
name: Rastogi, Nidhi
Publisher: name: arXiv
Year: 2024
Subjects: subject: Cryptography and Security (cs.CR)
subject: Artificial Intelligence (cs.AI)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: Deep neural networks for classification are vulnerable to adversarial attacks, where small perturbations to input samples lead to incorrect predictions. This susceptibility, combined with the black-box nature of such networks, limits their adoption in critical applications like autonomous driving. Feature-attribution-based explanation methods provide relevance of input features for model predictions on input samples, thus explaining model decisions. However, we observe that both model predictions and feature attributions for input samples are sensitive to noise. We develop a practical method for this characteristic of model prediction and feature attribution to detect adversarial samples. Our method, PASA, requires the computation of two test statistics using model prediction and feature attribution and can reliably detect adversarial samples using thresholds learned from benign samples. We validate our lightweight approach by evaluating the performance of PASA on varying strengths of FGSM, PGD, BIM, and CW attacks on multiple image and non-image datasets. On average, we outperform state-of-the-art statistical unsupervised adversarial detectors on CIFAR-10 and ImageNet by 14\% and 35\% ROC-AUC scores, respectively. Moreover, our approach demonstrates competitive performance even when an adversary is aware of the defense mechanism.
description: 9th IEEE European Symposium on Security and Privacy
Cybersecurity in Global Supply Chains: Risks, Regulations, and Emerging Technologies
Creators: name: Rasool, Sanati
Publisher: name: Zenodo
Year: 2025
Subjects: Cybersecurity, Supply Chain, AI, IoT, Risk Management, GDPR, NIST, Blockchain, SolarWinds, Cyber Culture

description: This working paper was developed as part of a graduate-level project at the University of Southern Indiana (Romain College of Business). It examines the rising importance of cybersecurity in global supply chains, analyzing industry-specific threats, regulatory impacts, and the systemic consequences of cyberattacks such as the SolarWinds incident. The paper also explores how emerging technologies like AI, IoT, and blockchain are reshaping both the risks and defenses in supply chain management, and emphasizes the importance of a strong cybersecurity culture throughout the ecosystem.
Accelerating Geo-distributed Machine Learning with Network-Aware Adaptive Tree and Auxiliary Route
Creators: name: Li, Zonghang
name: Feng, Wenjiao
name: Cai, Weibo
name: Yu, Hongfang
name: Luo, Long
name: Sun, Gang
name: Du, Hongyang
name: Niyato, Dusit
Publisher: name: arXiv
Year: 2024
Subjects: subject: Distributed, Parallel, and Cluster Computing (cs.DC)
subject: FOS: Computer and information sciences
subject: I.2.11; C.2.4
subject: 68T99

description: Distributed machine learning is becoming increasingly popular for geo-distributed data analytics, facilitating the collaborative analysis of data scattered across data centers in different regions. This paradigm eliminates the need for centralizing sensitive raw data in one location but faces the significant challenge of high parameter synchronization delays, which stems from the constraints of bandwidth-limited, heterogeneous, and fluctuating wide-area networks. Prior research has focused on optimizing the synchronization topology, evolving from starlike to tree-based structures. However, these solutions typically depend on regular tree structures and lack an adequate topology metric, resulting in limited improvements. This paper proposes NetStorm, an adaptive and highly efficient communication scheduler designed to speed up parameter synchronization across geo-distributed data centers. First, it establishes an effective metric for optimizing a multi-root FAPT synchronization topology. Second, a network awareness module is developed to acquire network knowledge, aiding in topology decisions. Third, a multipath auxiliary transmission mechanism is introduced to enhance network awareness and facilitate multipath transmissions. Lastly, we design policy consistency protocols to guarantee seamless updates of transmission policies. Empirical results demonstrate that NetStorm significantly outperforms distributed training systems like MXNET, MLNET, and TSEngine, with a speedup of 6.5~9.2 times over MXNET.
description: 17 pages, 20 figures
Interacting Crystalline Topological Insulators in two-dimensions with Time-Reversal Symmetry
Creators: name: Soldini, Martina O.
name: Aksoy, Ömer M.
name: Neupert, Titus
Publisher: name: arXiv
Year: 2024
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Topology is routinely used to understand the physics of electronic insulators. However, for strongly interacting electronic matter, such as Mott insulators, a comprehensive topological characterization is still lacking. When their ground state only contains short-range entanglement and does not break symmetries spontaneously, they generically realize crystalline fermionic symmetry-protected topological phases (cFSPTs), supporting gapless modes at the boundaries or at the lattice defects. Here, we provide an exhaustive classification of cFSPTs in two dimensions with $\mathrm{U}(1)$ charge-conservation and spinful time-reversal symmetries, namely, those generically present in spin-orbit coupled insulators, for any of the 17 wallpaper groups. It has been shown that the classification of cFSPTs can be understood from appropriate real-space decorations of lower-dimensional subspaces, and we expose how these relate to the Wyckoff positions of the lattice. We find that all nontrivial one-dimensional decorations require electronic interactions. Furthermore, we provide model Hamiltonians for various decorations, and discuss the signatures of cFSPTs. This classification paves the way to further explore topological interacting insulators, providing the backbone information in generic model systems and ultimately in experiments.
Additional file 1 of Effects of Broussonetia papyrifera silage on rumen fermentation parameters and microbes of Holstein heifers
Creators: name: Wen, Zhiying
name: Chen, Yiye
name: Wu, Longfei
name: Tian, Hanchen
name: Zhu, Ni
name: Guo, Yongqing
name: Deng, Ming
name: Liu, Jianying
name: Sun, Baoli
Publisher: name: figshare
Year: 2022
Subjects: subject: Biophysics
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Biotechnology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 1: Table S1. Effects of BPS on rumen bacteria (phylum-level) of Holstein heifers.
Edge-wave phase-shifts versus normal-mode phase-tilts in an Eady problem with a sloping boundary
Creators: name: Mak, Julian
name: Harnik, Nili
name: Heifetz, Eyal
name: Kumar, Gautam
name: Ong, Ellie Q. Y.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: Atmospheric and Oceanic Physics (physics.ao-ph)
subject: FOS: Physical sciences

description: One mechanistic interpretation of baroclinic instability is that of mutual constructive interference of Rossby edge-waves. While the two edge-waves and their relative phase-shifts are invoked as part of the mechanistic interpretation, the phase-tilts of the related normal modes are often presented instead. Here we highlight the differences between edge-wave phase-shifts and normal-mode phase-tilts, in the context of an Eady problem modified by the presence of a sloping boundary. We argue and present evidence that the normal-mode phase-tilt is potentially a misleading quantity to use, and edge-wave phase-shifts should be the ones that are mechanistically relevant. We also provide a clarification for the mechanistic rationalization for baroclinic instability in the presence of slopes (such as suppression of growth rates) that is valid over all parameter space, in contrast to previous attempts. We further present evidence that there is a strong correlation between quantities diagnosed from the GEOMETRIC framework with the edge-wave phase-shifts, but not the normal-mode phase-tilts. The result is noteworthy in that the geometric framework makes no explicit reference to the edge-wave structures in its construction, but the correlation suggests that in problems where edge-wave structures are not so well-defined or readily available, the GEOMETRIC framework should still capture mechanistic and dynamical information. Some implications for parameterization of baroclinic instability and relevant eddy-mean feedbacks are discussed. For completeness, we also provide an explicit demonstration that the linear instability problem of the present modified Eady problem is parity-time symmetric, and speculate on some suggestive links between parity-time symmetry, shear instability, and the edge-wave interaction mechanism.
description: 9 figures; discrepancy of arXiv abstract and file abstract, because number of characters exceeded in arXiv version
Additional file 2 of Effects of Broussonetia papyrifera silage on rumen fermentation parameters and microbes of Holstein heifers
Creators: name: Wen, Zhiying
name: Chen, Yiye
name: Wu, Longfei
name: Tian, Hanchen
name: Zhu, Ni
name: Guo, Yongqing
name: Deng, Ming
name: Liu, Jianying
name: Sun, Baoli
Publisher: name: figshare
Year: 2022
Subjects: subject: Biophysics
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Biotechnology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 2: Table S2. Effects of BPS on rumen bacteria (genus-level) of Holstein heifers.
Effect of biquadratic magnetic exchange interaction in the 2D antiferromagnets MPS_3 (M = Mn, Fe, Co, Ni)
Creators: name: Amirabbasi, Mohammad
name: Kratzer, Peter
Publisher: name: arXiv
Year: 2024
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The two-dimensional van der Waals (vdW) materials MPS_3(M = Mn, Fe, Co, Ni) display antiferromagnetic ordering of the magnetic moments at the transition metal ions. The possibility to exfoliate thin layers that preserve the magnetic order makes these materials interesting for numerous applications in devices that require integration of flexible patches of magnetic materials, e.g. in antiferromagnetic spintronics. Hence, an improved understanding of their magnetic properties is desirable. Here, we parameterize spin Hamiltonians for a monolayer of all four materials of this class using density functional theory plus Hubbard U calculations. We provide a step-by-step guide for calculating the magnetic exchange interactions and magnetic anisotropy energy using the (non-)collinear DFT+U(+ SOC) approach with a suitably chosen U for each material. It is found that the biquadratic interactions gain in importance while moving through the 3d series. Retaining the leading terms of a Holstein-Primakoff-transformed spin Hamiltonian, the magnon spectra are calculated. While MnPS_3 is found to be an almost isotropic antiferromagnet with a tiny gap, the biquadratic interaction opens an increasingly wider gap for FePS_3, CoPS_3 and NiPS_3. In line with this observation, Monte Carlo simulations demonstrate that the biquadratic interactions contribute to a systematic rise in the Neel temperature from FePS_3 to NiPS_3.
description: 14 pages, 9 figures
Additional file 1 of Cardioprotective effects of sodium thiosulfate against doxorubicin-induced cardiotoxicity in male rats
Creators: name: Shekari, Maryam
name: Gortany, Narges Khalilian
name: Khalilzadeh, Mina
name: Abdollahi, Alireza
name: Ghafari, Homanaz
name: Dehpour, Ahmad Reza
name: Ghazi-Khansari, Mahmoud
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 1.
Birefringent spin-photon interface generates polarization entanglement
Creators: name: Leppenen, Nikita
name: Smirnov, Dmitry S.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Physics (quant-ph)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: A spin-photon interface based on the luminescence of a singly charged quantum dot in a micropillar cavity allows for the creation of photonic entangled states. Current devices suffer from cavity birefringence, which limits the generation of spin-photon entanglement. In this paper, we theoretically study the light absorption and emission by the interface with an anisotropic cavity and derive the maximal excitation and spin-photon entanglement conditions. We show that the concurrence of the spin-photon state equal to one and complete quantum dot population inversion can be reached for a micropillar cavity with any degree of birefringence by tuning the quantum dot resonance strictly between the cavity modes. This sweet spot is also valid for generating a multiphoton cluster state, as we demonstrate by calculating the three-tangle and fidelity with the maximally entangled state.
description: 10 pages, 4 figures
Additional file 1 of Sensitivity and specificity of OraQuick® HIV self-test compared to a 4th generation laboratory reference standard algorithm in urban and rural Zambia
Creators: name: Neuman, Melissa
name: Mwinga, Alwyn
name: Kapaku, Kezia
name: Sigande, Lucheka
name: Gotsche, Caroline
name: Taegtmeyer, Miriam
name: Dacombe, Russell
name: Maluzi, Kwitaka
name: Kosloff, Barry
name: Johnson, Cheryl
name: Hatzold, Karin
name: Corbett, Elizabeth L.
name: Ayles, Helen
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Table S1. Demonstration Instructions. Figure S1. Laboratory reference testing algorithm for STAR clinical performance study. Table S2. Video Checklist. Table S3. Sensitivity analysis excluding known HIV+. Table S4. Sensitivity of RDT Vs Laboratory Reference Standard. Table S5. Testing details of participants with discordant RDT and laboratory algorithms. Table S6. Characteristics of respondents in CPS with video and CPS-only sub-samples. Table S7. Determinants of completing all steps correctly among video sub-sample. Table S8. Errors observed during video review. Table S9. User perceptions of HIVST (N=85). Table S10. User-reported errors in CPS with video and CPS-only sub-samples.
Disentangling left and right-handed neutrino effects in $B\rightarrow K^{(*)}νν$
Creators: name: Leal, L. P. S.
name: Rosauro-Alcaraz, S.
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The first observation of $\mathcal{B}\left(B^+\rightarrow K^+νν\right)$ by the Belle II experiment lies almost $3σ$ away from the Standard Model expectation. In this letter we study this result in the SMEFT, extended by a light right-handed neutrino. We explore the correlations between the measured decay rate and other observables, such as $\mathcal{B}\left(B\rightarrow K^*νν\right)$ and $F_L\left(B\rightarrow K^*νν\right)$, showing that they could disentangle among scenarios involving left-handed neutrinos and those with the right-handed ones. Furthermore, we find that the high-$p_T$ tails of Drell-Yan processes studied at LHC provide important constraints that help us exclude some of the scenarios consistent with the Belle II result.
description: Matches published version. Few comments added
Additional file 1 of Epidemiology and outcomes in patients with anemia of CKD not on dialysis from a large US healthcare system database: a retrospective observational study
Creators: name: Lamerato, Lois
name: James, Glen
name: van Haalen, Heleen
name: Hedman, Katarina
name: Sloand, James A.
name: Tang, Amy
name: Wittbrodt, Eric T.
name: Yee, Jerry
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: Medicine
subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Marine Biology
subject: Cancer
subject: Science Policy
subject: Hematology
subject: Computational Biology

description: Additional file 1: Appendix Table S1. Clinical outcomes at 1 and 5 years. Appendix Table S2. Multivariable HRs for the association between baseline factors and bleeding outcomes over 1 year (A) and after 5 years (B) of follow-up in patients without anemia and in patients with anemia at baseline (bold). Appendix Table S3. Multivariable HRs for the association between baseline factors and renal outcomes over 1 year (A) and after 5 years (B) of follow-up in patients without anemia and in patients with anemia (bold). Appendix Table S4. Multivariable HRs for the association between baseline factors and cardiovascular outcomes over 1 year (A) and after 5 years (B) of follow-up in patients without anemia and in patients with anemia (bold). Appendix Table S5. Competing risks analysis of the association between baseline factors and renal (A) and cardiovascular (B) outcomes after 5 years of follow-up in patients without anemia and patients with anemia (bold). Appendix Fig. S1. Selection of the study cohort. Appendix Fig. S2. Kaplan–Meier curves for renal outcomes stratified by CKD stage over 5 years of follow-up, in patients without anemia (A) and patients with anemia at baseline (B). Appendix Fig. S3. Kaplan–Meier curves for cardiovascular outcomes stratified by CKD stage over 5 years of follow-up, in patients without anemia (A) and patients with anemia (B). Appendix Fig. S4. Competing risk models for 5-year outcomes (CIF). Appendix Fig. S5. Kaplan–Meier curves for bleeding and hospitalization outcomes in patients without anemia (A) and patients with anemia (B). Appendix Fig. S6. Multivariable HRs for the association between baseline factors and incident anemia over 1 year and after 5 years of follow-up.
How Rare are TESS Free-Floating Planets?
Creators: name: Yang, Hongjing
name: Zang, Weicheng
name: Gan, Tianjun
name: Kuang, Renkun
name: Gould, Andrew
name: Mao, Shude
Publisher: name: arXiv
Year: 2024
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Recently, Kunimoto et al. claimed that a short-lived signal in the Transiting Exoplanet Survey Satellite (TESS) Sector 61 database was possibly caused by a microlensing event with a terrestrial-mass free-floating planet (FFP) lens. In this study, we investigate TESS's ability to detect microlensing FFPs by considering the detailed source information (e.g., distance and radius), the TESS photometric accuracy, and finite-source effects. Using the FFP mass function from microlensing surveys toward the Galactic bulge, we find that only $0.0018$ microlensing events are expected to be detected in TESS Sector 61 for the entire planetary mass range. The reported signal is unlikely to be a real microlensing event, which is consistent with the evidence from the long-term OGLE data that the signal was likely due to a stellar flare. By extrapolating our result to fainter stars until $T = 16$ mag and adopting a possible optimized search algorithm, we find that only $\sim 1$ FFP events can be detected in the entire TESS mission within the first 7 years. Significant improvments of our understanding of FFPs still requires future satellite missions, such as Roman and Earth 2.0, which can detect thousands of FFPs.
description: 8 pages, 5 figures. Accepted by ApJL
Additional file 1 of Patient perspectives on depot buprenorphine treatment for opioid addiction – a qualitative interview study
Creators: name: Johnson, Björn
name: Flensburg, Olivia Liahaugen
name: Capusan, Andrea Johansson
Publisher: name: figshare
Year: 2022
Subjects: subject: Pharmacology
subject: Biotechnology
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1.
Some sharp lower bounds for the bipartite Turán number of theta graphs
Creators: name: Theodorakopoulos, Stefanos
Publisher: name: arXiv
Year: 2024
Subjects: subject: Combinatorics (math.CO)
subject: FOS: Mathematics

description: We expand Conlon's random algebraic construction to show that for any odd number $k \geq 3$ exists a natural number $c_k$ (the same as Conlon's) such that $\operatorname{ex}(n^a,n,θ_{k,c_k}) = Ω_{k,a}((n^{1 + a})^{\frac{k + 1}{2k}})$, with $a \in [\frac{k - 1}{k + 1}, 1)$. Where given a graph $H$, we denote by $\operatorname{ex}(n,m,H)$ the maximum number of edges an $H-$free bipartite graph can have when the cardinalities of its parts are $n$ and $m$. Also, we denote with $θ_{k,l}$ the graph where two vertices are connected through $l$ disjoint paths of length $k$.
description: arXiv admin note: text overlap with arXiv:1411.0856 by other authors
Additional file 2 of Patient perspectives on depot buprenorphine treatment for opioid addiction – a qualitative interview study
Creators: name: Johnson, Björn
name: Flensburg, Olivia Liahaugen
name: Capusan, Andrea Johansson
Publisher: name: figshare
Year: 2022
Subjects: subject: Pharmacology
subject: Biotechnology
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 2.