cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Shear viscosity of a crosslinked polymer melt
Creators: name: Broderix, Kurt
name: Loewe, Henning
name: Mueller, Peter
name: Zippelius, Annette
Publisher: name: arXiv
Year: 1998
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Soft Condensed Matter (cond-mat.soft)
subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: We investigate the static shear viscosity on the sol side of the vulcanization transition within a minimal mesoscopic model for the Rouse-dynamics of a randomly crosslinked melt of phantom polymers. We derive an exact relation between the viscosity and the resistances measured in a corresponding random resistor network. This enables us to calculate the viscosity exactly for an ensemble of crosslinks without correlations. The viscosity diverges logarithmically as the critical point is approached. For a more realistic ensemble of crosslinks amenable to the scaling description of percolation, we prove the scaling relation $k=ϕ-β$ between the critical exponent $k$ of the viscosity, the thermal exponent $β$ associated with the gel fraction and the crossover exponent $ϕ$ of a random resistor network.
description: 8 pages, uses Europhysics Letters style; Revisions: results extended
Onthophagus (Onthophagus) kaszabi Balthasar 1963
Creators: name: Bezděk, Aleš
name: Hájek, Jiří
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Onthophagus
Onthophagus kaszabi

description: Onthophagus (Onthophagus) kaszabi Balthasar, 1963
 Onthophagus (s. str.) kaszabi Balthasar, 1963b: 91.
One paratype is deposited in NMPC (ex coll. V. Balthasar):
PARATYPE (J): ‘Uralsk / Reitter [p] // Coll. Reitter [p] // Onthophagus / (s. str.) kaszabi / n.sp. Balth. / J [hw] / Paratypus [p] 62 [hw, orange label] // Onth. / vitulus (F.) J min. [hw] / SCHEUERN det. [p] 96 [hw] // Onthophagus / (Palaeonthophagus) / vitulus (Fabricius, 1776) / det. S. Ziani 2004 [p]’.
 Current status. Junior subjective synonym of Onthophagus (Palaeonthophagus) vitulus (Fabricius, 1776), see KABAKOV (1982) and ZIANI & GUDENZI (2006).
description: Published as part of Bezděk, Aleš & Hájek, Jiří, 2013, Catalogue of type specimens of beetles (Coleoptera) deposited in the National Museum, Prague, Czech Republic, pp. 387-442 in Acta Entomologica Musei Nationalis Pragae 53 (1) on page 409, DOI: 10.5281/zenodo.5739743
Infrared features of gravitational scattering and radiation in the eikonal approach
Creators: name: Ciafaloni, Marcello
name: Colferai, Dimitri
name: Veneziano, Gabriele
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Following a semi-classical eikonal approach --- justified at transplanckian energies order by order in the deflection angle $Θ_s\sim\frac{4G\sqrt{s}}{b} \equiv \frac{2 R}{b}$ --- we investigate the infrared features of gravitational scattering and radiation in four space-time dimensions, and we illustrate the factorization and cancellation of the infinite Coulomb phase for scattering and the eikonal resummation for radiation. As a consequence, both the eikonal phase $2δ(E,b)$ and the gravitational-wave (GW) spectrum $\frac{\mathrm{d}E^{GW}}{\mathrm{d}ω}$ are free from infrared problems in a frequency region extending from zero to (and possibly beyond) $ω=1/R$. The infrared-singular behavior of $4$-D gravity leaves a memory in the deep infrared region ($ωR \ll ωb < 1$) of the spectrum. At $\mathcal{O}(ωb)$ we confirm the presence of logarithmic enhancements of the form already pointed out by Sen and collaborators on the basis of non leading corrections to soft-graviton theorems. These, however, do not contribute to the unpolarized and/or azimuthally-averaged flux. At $\mathcal{O}(ω^2 b^2)$ we find instead a positive logarithmically-enhanced correction to the total flux implying an unexpected maximum of its spectrum at $ωb \sim 0.5$. At higher orders we find subleading enhanced contributions as well, which can be resummed, and have the interpretation of a finite rescattering Coulomb phase of emitted gravitons.
description: 24 pages, 7 figures; in v2 added 1 figure and several comments
Additional file 1 of Analysis of factors contributing to occupational health inequality in Korea: a cross-sectional study using nationally representative survey data
Creators: name: Noh, Eunjeong
name: Khang, Young-Ho
Publisher: name: figshare
Year: 2021
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 1: Table S1. Percentages and means of occupational class, childhood and adulthood socioeconomic position (SEP) indicators, and pathway variables for men aged 35–64: the 2007–2009 Korea National Health and Nutrition Survey (n = 4176). Table S2. Age-standardized percentages of childhood and adulthood socioeconomic position (SEP) indicators and pathway variables by occupational class for men aged 35–64: The 2013–2015 Korea National Health and Nutrition Survey (n = 4011). Table S3. Age-adjusted meansa of childhood and adulthood socioeconomic position (SEP) indicators and pathway variables by occupational class for men aged 35–64: the 2013–2015 Korea National Health and Nutrition Survey (n = 4011).
A novel CEP290 disease-causing variant identified in a patient with leber congenital amaurosis using a medical diagnostic panel sequencing
Creators: name: Chen, Bin-Bin
name: Zhai, Yi
name: Huo, Ya-Nan
name: Yang, Shuo
name: Zhang, Zhi-Yong
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: This study aims to identify the underlying genetic cause of a Chinese patient with Leber congenital amaurosis (LCA). Detailed clinical data and family history were collected. A medical diagnostic panel sequencing covering 4450 genes was conducted. Two candidate disease-causing mutations detected in CEP290 were then validated with Sanger sequencing and bioinformatic analysis. Reverse transcription polymerase chain reaction (RT-PCR) and cDNA sequencing were performed to understand the effect of the novel CEP290 mutation on CEP290 mRNA splicing. A five-month-old LCA patient with both parents was enrolled. Medical diagnostic panel sequencing revealed that the patient is a compound heterozygote for two potentially pathogenic CEP290 mutations. Among them, c.1666dupA (p.I556NfsX20) was previously reported and has a significant association with LCA phenotype. A novel CEP290 mutation (c.3310–1_3313delGCTTA) was confirmed in both the patient and her father. RT-PCR and cDNA sequencing confirmed that the novel mutation affects the CEP290 mRNA splicing and results in a complete skipping of exon 29. The frameshift resulted in an early stop codon and truncation of the mutant protein by 1371 amino acid residues (p.L1104fsX6). Our report provided a new mutation to the spectrum of CEP290-related diseases. The data suggested that the c.3310–1_3313delGCTTA mutation affects the CEP290 mRNA splicing and the CEP290 protein function. This valuable information is important for future studies on the mRNA splicing of CEP290 and the pathogenesis of CEP290-related diseases.
MOESM1 of Coronary microvascular dysfunction is associated with poor glycemic control amongst female diabetics with chest pain and non-obstructive coronary artery disease
Creators: name: Jaskanwal Sara
name: Taher, Riad
name: Kolluri, Nikhil
name: Vella, Adrian
name: Lerman, Lilach
name: Lerman, Amir
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: 60506 Virology
subject: Computational Biology

description: Additional file 1: Table S1. Summary of clinical characteristics between patients stratified by sex with normal versus abnormal endothelial-independent and endothelial-dependent microvascular function. Table S2. Summary of medication use at the time of coronary catheterization between patients stratified by sex with normal versus abnormal endothelial-independent and endothelial-dependent microvascular function.
Accretion Disks Around Young Objects. III. Grain Growth
Creators: name: D'Alessio, Paola
name: Calvet, Nuria
name: Hartmann, Lee
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present detailed models of irradiated T Tauri disks including dust grain growth with power-law size distributions. The models assume complete mixing between dust and gas and solve for the vertical disk structure self-consistentlyincluding the heating effects of stellar irradiation as well as local viscous heating. For a given total dust mass, grain growth is found to decrease the vertical height of the surface where the optical depth to the stellar radiation becomes unit and thus the local irradiation heating, while increasing the disk emission at mm and sub-mm wavelengths. The resulting disk models are less geometrically thick than our previous models assuming interstellar medium dust, and agree better with observed spectral energy distributions and images of edge-on disks, like HK Tau/c and HH 30. The implications of models with grain growth for determining disk masses from long-wavelength emission are considered.
description: 29 pages, including 11 figures and 1 table, APJ accepted
Additional file 1 of Self-rated health among undocumented and newly regularized migrants in Geneva: a cross-sectional study
Creators: name: Fakhoury, Julien
name: Burton-Jeangros, Claudine
name: Guessous, Idris
name: Consoli, Liala
name: Duvoisin, Aline
name: Jackson, Yves
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy

description: Additional file 1. Questionnaire used in the Parchemins Study for data collection (.pdf).
Onthophagus klapperichi Balthasar 1952
Creators: name: Bezděk, Aleš
name: Hájek, Jiří
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Onthophagus
Onthophagus klapperichi

description: Onthophagus klapperichi Balthasar, 1952
 Onthophagus klapperichi Balthasar, 1952b: 228.
One paratype is deposited in NMPC (ex coll. V. Balthasar):
PARATYPE (J): ‘Kuatun (2300m) 27,40n.Br. / 117,40ö.L. J. Klapperich / 21.6. 1938 (Fukien) [p, violet label] // Typus [hw, red label] // Onthophagus / klapperichi / n.sp. [hw] / Dr. V. Balthasar det. [p]’.
 Current status. Onthophagus (Parascatonomus) klapperichi Balthasar, 1952, see LÖBL et al. (2006).
description: Published as part of Bezděk, Aleš & Hájek, Jiří, 2013, Catalogue of type specimens of beetles (Coleoptera) deposited in the National Museum, Prague, Czech Republic, pp. 387-442 in Acta Entomologica Musei Nationalis Pragae 53 (1) on page 409, DOI: 10.5281/zenodo.5739743
Micromorphic Computational Homogenization for Mechanical Metamaterials with Patterning Fluctuation Fields
Creators: name: Rokoš, O.
name: Ameen, M. M.
name: Peerlings, R. H. J.
name: Geers, M. G. D.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: This paper presents a homogenization framework for elastomeric metamaterials exhibiting long-range correlated fluctuation fields. Based on full-scale numerical simulations on a class of such materials, an ansatz is proposed that allows to decompose the kinematics into three parts, i.e. a smooth mean displacement field, a long-range correlated fluctuating field, and a local microfluctuation part. With this decomposition, a homogenized solution is defined by ensemble averaging the solutions obtained from a family of translated microstructural realizations. Minimizing the resulting homogenized energy, a micromorphic continuum emerges in terms of the average displacement and the amplitude of the patterning long-range microstructural fluctuation fields. Since full integration of the ensemble averaged global energy (and hence also the corresponding Euler--Lagrange equations) is computationally prohibitive, a more efficient approximative computational framework is developed. The framework relies on local energy density approximations in the neighbourhood of the considered Gauss integration points, while taking into account the smoothness properties of the effective fields and periodicity of the microfluctuation pattern. Finally, the implementation of the proposed methodology is briefly outlined and its performance is demonstrated by comparing its predictions against full scale simulations of a representative example.
description: 31 pages, 11 figures, 1 table, 1 algorithm, Journal of the Mechanics and Physics of Solids, 30 August 2018
Specific heat of the ideal gas obeying the generalized exclusion statistics
Creators: name: Aoyama, Takahiro
Publisher: name: arXiv
Year: 2000
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We calculate the specific heat of the ideal gas obeying the generalized exclusion statistics (GES) in the continuum model and the tight binding model numerically. In the continuum model of 3-d space, the specific heat increases with statistical parameter at low temperature whereas it decreases with statistical parameter at high temperature. We find that the critical temperature normalized by $μ_f$ (Fermi energy) is 0.290. The specific heat of 2-d space was known to be independent of $g$ in the continuum model, but it varies with $g$ drastically in the tight-binding model. From its unique behavior, identification of GES particles will be possible from the specific heat.
description: 14 pages, 9 figures, to be published in Eur. Phys. J. B, References and figures added, typos corrected, one section removed and two sections merged
Onthophagus kleinei Balthasar 1935
Creators: name: Bezděk, Aleš
name: Hájek, Jiří
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Onthophagus
Onthophagus kleinei

description: Onthophagus kleinei Balthasar, 1935
 Onthophagus Kleinei Balthasar, 1935b: 314.
The holotype is deposited in NMPC (ex coll. V. Balthasar):
HOLOTYPE (♀): ‘Nitou Tatsienlu / Szechuan China [p] // Typus [p, red label, back frame] // O. Kleinei m. / Typ! [hw] / Dr. Balthasar det. [p]’.
 Current status. Valid species; not assigned to any subgenus.
description: Published as part of Bezděk, Aleš & Hájek, Jiří, 2013, Catalogue of type specimens of beetles (Coleoptera) deposited in the National Museum, Prague, Czech Republic, pp. 387-442 in Acta Entomologica Musei Nationalis Pragae 53 (1) on page 410, DOI: 10.5281/zenodo.5739743
Additional file 3: of Proliferative potential and resistance to immune checkpoint blockade in lung cancer patients
Creators: name: Pabla, Sarabjot
name: Conroy, Jeffrey
name: Nesline, Mary
name: Glenn, Sean
name: Papanicolau-Sengos, Antonios
name: Burgher, Blake
name: Hagen, Jacob
name: Giamo, Vincent
name: Andreas, Jonathan
name: Lenzo, Felicia
name: Yirong, Wang
name: Dy, Grace
name: Yau, Edwin
name: Early, Amy
name: Chen, Hongbin
name: Bshara, Wiam
name: Madden, Katherine
name: Shirai, Keisuke
name: Dragnev, Konstantin
name: Tafe, Laura
name: Marin, Daniele
name: Zhu, Jason
name: Clarke, Jeff
name: Labriola, Matthew
name: McCall, Shannon
name: Zhang, Tian
name: Zibelman, Matthew
name: Ghatalia, Pooja
name: Araujo-Fernandez, Isabel
name: Singavi, Arun
name: George, Ben
name: MacKinnon, Andrew
name: Thompson, Jonathan
name: Singh, Rajbir
name: Jacob, Robin
name: Dressler, Lynn
name: Steciuk, Mark
name: Binns, Oliver
name: Kasuganti, Deepa
name: Shah, Neel
name: Ernstoff, Marc
name: Odunsi, Kunle
name: Kurzrock, Razelle
name: Gardner, Mark
name: Galluzzi, Lorenzo
name: Morrison, Carl
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: Figure S2. Disease control rates for PD-L1 positive (TPS >â 1%) and negative tumors combined with cell proliferation status. (TIFF 345 kb)
Additional file 1 of Development of a preliminary conceptual model of the patient experience of chronic kidney disease: a targeted literature review and analysis
Creators: name: Flythe, Jennifer E.
name: Karlsson, Niklas
name: Sundgren, Anna
name: Cordero, Paul
name: Grandinetti, Amanda
name: Cremisi, Henry
name: Rydén, Anna
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1: Table S1 Search terms used for the initial PubMed literature search. Table S2 Predefined inclusion and exclusion criteria for selecting publications for review. Table S3 PRO instrument analysis. Table S4 Signs/symptoms: mentions and prevalence for all publications (N=100). Table S5 Life impacts: mentions and prevalence for all publications (N = 100). Table S6 Signs/symptoms: mentions and prevalence by subpopulation. Table S7 Life impacts: mention and prevalence by subpopulation. Table S8 List of the 138 candidate PRO instruments screened for inclusion in the full analysis Generic HRQOL
ИЧКИ ИШЛАР ОРГАНЛАРИНИНГ ГИЁҲВАНДЛИК ВОСИТАЛАРИНИ, УЛАРНИНГ АНАЛОГЛАРИНИ ЁКИ ПСИХОТРОП МОДДАЛАРНИ НОҚОНУНИЙ МУАМАЛАСИГА ҚАРШИ КУРАШНИ ТАШКИЛ ЭТИШ
Creators: name: Жўраев, Шохрух
Publisher: name: Zenodo
Year: 2024

description: Бугун дунёда жамоат тартиби ва хавфсизлигини сифатли таъминлаш тизими  иқтисодий  жиҳатдан  қудратли  мамлакатлардагина  яратилган. Бунинг  сабаби  шундаки,  жамоат  тартиби  ва  хавфсизлигини  сифатли таъминлаш учун самарали ишлар амалга оширилмоқда.
The importance of self-consistency in determining interface properties of S-I-N and D-I-N structures
Creators: name: Martin, A. M.
name: Annett, J. F.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We develop a method to solve the Bogoliubov de Gennes equation for superconductors self-consistently, using the recursion method. The method allows the pairing interaction to be either local or non-local corresponding to $s$ and $d$--wave superconductivity, respectively. Using this method we examine the properties of various $S-I-N$ and $D-I-N$ interfaces. In particular we self-consistently calculate the spatially varying density of states and the superconducting order parameter. We see that changing the strength of the insulating barrier, at the interface, does not, in the case of an $s$--wave superconductor, dramatically, change the low energy local density of states, in the superconducting region near the interface. This is in stark contrast to what we see in the case of a $D-I-N$ interface where the local particle density of states is changed dramatically. Hence we deduce that in calculating such properties as the conductance of $S-I-N$ and $D-I-N$ structures it is far more important to carry out a self-consistent calculations in the $d$--wave case.
description: 14 pages, 8 figures, submitted to special issue of "Superlattices and Microstructures"
MOESM5 of Creation of a functional hyperthermostable designer cellulosome
Creators: name: Kahn, Amaranta
name: Moraïs, Sarah
name: Galanopoulou, Anastasia
name: Daehwan Chung
name: Sarai, Nicholas
name: Hengge, Neal
name: Hatzinikolaou, Dimitris
name: Himmel, Michael
name: Bomble, Yannick
name: Bayer, Edward
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Additional file 5: Figure S4. Thermostability of the ScafGTV, complexed to the dockerin-bearing GH5 enzyme chimaeras (GH5-g, -t and -v). Thermostability was determined by non-denaturing PAGE after 0, 2, 6, 16 and 24 h of incubation at 70 °C, 75 °C and 80 °C.
Onthophagus (Onthophagus) krali Balthasar 1963
Creators: name: Bezděk, Aleš
name: Hájek, Jiří
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Onthophagus
Onthophagus krali

description: Onthophagus (Onthophagus) krali Balthasar, 1963
 Onthophagus (s. str.) králi Balthasar, 1963d: 603.
The holotype and one paratype are deposited in NMPC (ex coll. V. Balthasar):
HOLOTYPE (J): ‘Elisabethpol / Reitter [p] // Onthophagus / králi n.sp. / 63 Balth. [hw] / Holotypus [p, orange label] // Onthophagus / (Palaeonthophagus) / ponticus Harold, 1883 / det. S. Ziani 2004 [p]’.
PARATYPE (J): ‘Elisabethpol / Reitter [p] // Onthophagus / králi n.sp. / J Balth. 63 [hw] / Paratypus [p, orange label] // Onthophagus / (Palaeonthophagus) / ponticus Harold, 1883 / det. S. Ziani 2004 [p]’.
 Current status. Junior subjective synonym of Onthophagus (Palaeonthophagus) ponticus Harold, 1883, see ZIANI & GUDENZI (2006).
description: Published as part of Bezděk, Aleš & Hájek, Jiří, 2013, Catalogue of type specimens of beetles (Coleoptera) deposited in the National Museum, Prague, Czech Republic, pp. 387-442 in Acta Entomologica Musei Nationalis Pragae 53 (1) on page 410, DOI: 10.5281/zenodo.5739743
Distinguishing Majorana Zero Modes from Impurity States through Time-Resolved Transport
Creators: name: Tuovinen, Riku
name: Perfetto, Enrico
name: van Leeuwen, Robert
name: Stefanucci, Gianluca
name: Sentef, Michael A.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We study time-resolved charge transport in a superconducting nanowire using time-dependent Landauer-B{ü}ttiker theory. We find that the steady-state Majorana zero-bias conductance peak emerges transiently accompanied by characteristic oscillations after a bias-voltage quench. These oscillations are absent for a trivial impurity state that otherwise shows a very similar steady-state signal as the Majorana zero mode. In addition, we find that Andreev bound states or quasi-Majorana states in the topologically trivial bulk phase can give rise to a zero-bias conductance peak, also retaining the transient properties of the Majorana zero mode. Our results imply that (1) time-resolved transport may be used as a probe to distinguish between the Majorana zero mode and interfacial impurity states; and (2) the quasi-Majorana states mimic the transient signatures of the topological Majorana zero modes, indicating of the possibility of utilizing also the quasi-Majorana states in topological quantum computing as anyons with non-Abelian braiding statistics.
description: 7 pages and 4 figures in the main text, 9 pages and 1 figure in the supplemental material
Additional file 1 of Universal capability of 3-ketosteroid Δ1-dehydrogenases to catalyze Δ1-dehydrogenation of C17-substituted steroids
Creators: name: Wójcik, Patrycja
name: Glanowski, Michał
name: Wojtkiewicz, Agnieszka M.
name: Rohman, Ali
name: Szaleniec, Maciej
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Computational Biology

description: Additional file 1. Fig. S1. Root Mean Square Deviation and selected distances during MD simulation for androst-4-en-3,17-dione. Fragment of trajectory selected for MMPBSA calculations is marked with red rectangles. Fig. S2. Root Mean Square Deviation and selected distances during MD simulation for cholest-4-en-3-one. Fragment of trajectory selected for MMPBSA calculations is marked with red rectangles. Fig. S3. Root Mean Square Deviation and selected distances during MD simulation for diosgenone. Fragment of trajectory selected for MMPBSA calculations is marked with red rectangles. Fig. S4. Root Mean Square Deviation and selected distances during MD simulation for androstanolone. Fragment of trajectory selected for MMPBSA calculations is marked with red rectangles. Fig. S5. Root Mean Square Deviation (and selected distances during MD simulation for progesterone. Fragment of trajectory selected for MMPBSA calculations is marked with red rectangles. Fig. S6. Root Mean Square Deviation (and selected distances during MD simulation for testosterone propionate. Fragment of trajectory selected for MMPBSA calculations is marked with red rectangles. Fig. S7. Root Mean Square Deviation and selected distances during MD simulation for 6-dehydrotestosterone acetate. Fragment of trajectory selected for MMPBSA calculations is marked with red rectangles. Table S1. Fit parameters and statistics of phase solubility diagrams of steroids in the solution of HBC and 2% EGME. Table S2. Percentage of cholest-4-en-3-one forms dependent on initial substrate concentration; S: cholest-4-en-3-one, HBC: 2-hydroxypropyl-β-cyclodextrin. Table S3. Fit statistics of the AcmB Ping-Pong bi bi (non-sequential) mechanism. Fig. S8. Progress of the 1,2-dehydrogenation of 0.1 mM AD A and cholest-4-en-3-one B with 6.55 nM AcmB2 and 0.1 mM diosgenone C with 65.5 nM AcmB2 in the presence of 0.15 mM DCPIP in 50 mM Tris-HCl buffer pH 8.0. S–substrate; P–product. Fig. S9. Results of steady-state kinetics for dehydrogenation reaction of androst-4-en-3.17-dione A and cholest-4-en-3-one B calatyzed by AcmB. Reaction velocities were measured in 0.1 M K2HPO4/KH2PO4 buffer pH 6.5 with 2% HBC. 2% EGME. 0.052–0.174 mM DCPIP. 5–80 μM steroids and 0.30 μM of AcmB at 30 °C.Table S4. Fit parameters and statistics of AcmB and KSTD1 steady-state kinetics results.
Chandra Reveals the X-ray Glint in the Cat's Eye
Creators: name: Chu, Y. -H.
name: Guerrero, M. A.
name: Gruendl, R. A.
name: Williams, R. M.
name: Kaler, J. B.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We have obtained Chandra ACIS-S observations of NGC 6543, the Cat's Eye Nebula. The X-ray emission from NGC 6543 is clearly resolved into a point source at the central star and diffuse emission confined within the central elliptical shell and two extensions along the major axis. Spectral analysis of the diffuse component shows that the abundances of the X-ray-emitting gas are similar to those of the fast (1,750 km/s) stellar wind but not those of the nebula. Furthermore, the temperature of this gas is ~1.7 million K, which is 100 times lower than the expected post-shock temperature of the fast stellar wind. The combination of low temperature and wind abundances is puzzling. The thermal pressure of this hot gas is about twice the pressure in the cool nebular shell; thus, the hot gas plays an essential role in the ongoing evolution of the nebula.
description: 15 pages, 3 figures, accepted for publication in the ApJL
Additional file 1 of Type 2 diabetes and its characteristics are associated with poor oral health: findings from 60,590 senior women from the E3N study
Creators: name: Laouali, Nasser
name: El Fatouhi, Douae
name: Aguayo, Gloria
name: Balkau, Beverley
name: Boutron-Ruault, Marie-Christine
name: Bonnet, Fabrice
name: Fagherazzi, Guy
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1. Table s1: Characteristics of the E3N study population according to diabetes duration (N = 60,590). Table s2: Characteristics of the E3N study population according to age at diabetes diagnosis (N = 60,590). Table s3: Characteristics of the E3N study population according to diabetes treatment (N = 60,590). Figure s1: Flowchart representing the constitution of the study sample.
Crystal Field -AS_z^2 Does Not Produce One-Phonon Transitions With Delta S_z=+-2 [Comment on EPL 46, 692 (1999) by Leuenberger and Loss]
Creators: name: Chudnovsky, E. M.
name: Garanin, D. A.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Recently Leuenbeger and Loss suggested a theory of phonon-assisted relaxation in a molecular nanomagnet Mn-12 that "contrary to previous results is in reasonably good agreement ... with all experimental parameter values known so far". The purpose of this Comment is to show that the model of Leuenberger and Loss and its comparison with experiment are premised upon their incorrect use of the linear formula for the strain tensor. The spin-phonon coupling introduced by Leuenberger and Loss disappears if the nonlinear term in the strain tensor is taken into account.
description: 2 pages, no figures, submitted to EPL
A Comparison of Different Classical, Semiclassical and Quantum Treatments of Light-Matter Interactions: Understanding Energy Conservation
Creators: name: Li, Tao E.
name: Chen, Hsing-Ta
name: Subotnik, Joseph E.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Optics (physics.optics)
subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: The optical response of an electronic two-level system (TLS) coupled to an incident continuous wave (cw) electromagnetic (EM) field is simulated explicitly in one dimension by the following five approaches: (i) the coupled Maxwell-Bloch equations, (ii) the optical Bloch equation (OBE), (iii) Ehrenfest dynamics, (iv) the Ehrenfest+R approach and (v) classical dielectric theory (CDT). Our findings are as follows: (i) standard Ehrenfest dynamics predict the correct optical signals only in the linear response regime where vacuum fluctuations are not important; (ii) both the coupled Maxwell-Bloch equations and CDT predict incorrect features for the optical signals in the linear response regime due to a double-counting of self-interaction; (iii) by exactly balancing the effects of self-interaction versus the effects of quantum fluctuations (and insisting on energy conservation), the Ehrenfest+R approach generates the correct optical signals in the linear regime and slightly beyond, yielding, e.g., the correct ratio between the coherent and incoherent scattering EM fields. As such, Ehrenfest+R dynamics agree with dynamics from the quantum OBE, but whereas the latter is easily applicable only for a single TLS in vacuum, the former should be applicable to large systems in environments with arbitrary dielectrics. Thus, this benchmark study suggests that the Ehrenfest+R approach may be very advantageous for simulating light-matter interactions semiclassically.
description: 3 figures
MOESM4 of Creation of a functional hyperthermostable designer cellulosome
Creators: name: Kahn, Amaranta
name: MoraĂŻs, Sarah
name: Galanopoulou, Anastasia
name: Daehwan Chung
name: Sarai, Nicholas
name: Hengge, Neal
name: Hatzinikolaou, Dimitris
name: Himmel, Michael
name: Bomble, Yannick
name: Bayer, Edward
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Physiology
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences

description: Additional file 4: Figure S3. Non-denaturing PAGE assay revealing the proper stoichiometric ratio of interaction between the chimaeric enzyme and its specific monovalent scaffoldin. Titration of the dockerin-bearing GH5-t with the ScafT using the estimated molar ratios of components, yielded precise experimental data that indicated that the functional stoichiometric ratio was effectively between 1.1 and 1.2 GH5-t: ScafT The functional ratios of the other components of the system were determined in like fashion.
Additional file 1 of Development of the Paranormal and Supernatural Beliefs Scale using classical and modern test theory
Creators: name: Dean, Charlotte E.
name: Akhtar, Shazia
name: Gale, Tim M.
name: Irvine, Karen
name: Wiseman, Richard
name: Laws, Keith R.
Publisher: name: figshare
Year: 2021
Subjects: subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 1. Paranormal and Supernatural Beliefs Scale.
Are we ready to transfer optical light to gamma-rays?
Creators: name: Vranic, Marija
name: Grismayer, Thomas
name: Meuren, Sebastian
name: Fonseca, Ricardo A.
name: Silva, Luis O.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: Scattering relativistic electrons with optical lasers can result in a significant frequency upshift for the photons, potentially producing $γ$-rays. This is what linear Compton scattering taught us. Ultra-intense lasers offer nowadays a new paradigm where multi-photon absorption effects come into play. These effects can result in higher harmonics, higher yields and also electron-positron pairs. This article intends to discriminate the different laser scenarios that have been proposed over the past years as well as to give scaling laws for future experiments. The energy conversion from laser or particles to high-frequency photons is addressed for both the well-known counter propagating electron beam-laser interaction and for Quantum-electrodynamics cascades triggered by various lasers. Constructing bright and energetic gamma-ray sources in controlled conditions is within an ace of seeing the light of day.
description: 9 pages, 9 figures
Inhibition of CDK9 activity compromises global splicing in prostate cancer cells
Creators: name: Hu, Qiang
name: Poulose, Ninu
name: Girmay, Samuel
name: Helevä, Alma
name: Doultsinos, Dimitrios
name: Gondane, Aishwarya
name: Steele, Rebecca E
name: Liu, Xiaozhuo
name: Loda, Massimo
name: Liu, Song
name: Tang, Dean G.
name: Mills, Ian G
name: Itkonen, Harri M
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences

description: Cyclin-dependent kinase 9 (CDK9) phosphorylates RNA polymerase II to promote productive transcription elongation. Here we show that short-term CDK9 inhibition affects the splicing of thousands of mRNAs. CDK9 inhibition impairs global splicing and there is no evidence for a coordinated response between the alternative splicing and the overall transcriptome. Alternative splicing is a feature of aggressive prostate cancer (CRPC) and enables the generation of the anti-androgen resistant version of the ligand-independent androgen receptor, AR-v7. We show that CDK9 inhibition results in the loss of AR and AR-v7 expression due to the defects in splicing, which sensitizes CRPC cells to androgen deprivation. Finally, we demonstrate that CDK9 expression increases as PC cells develop CRPC-phenotype both in vitro and also in patient samples. To conclude, here we show that CDK9 inhibition compromises splicing in PC cells, which can be capitalized on by targeting the PC-specific addiction androgen receptor.
Additional file 2 of Arts engagement supports social connectedness in adulthood: findings from the HEartS Survey
Creators: name: Perkins, Rosie
name: Mason-Bertrand, Adele
name: Tymoszuk, Urszula
name: Spiro, Neta
name: Gee, Kate
name: Williamon, Aaron
Publisher: name: figshare
Year: 2021
Subjects: subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: Additional file 2.
Thermodynamics of the glassy state
Creators: name: Nieuwenhuizen, Th. M.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: A picture for thermodynamics of the glassy state is introduced. It assumes that one extra parameter, the effective temperature, is needed to describe the glassy state. This explains the classical paradoxes concerning the Ehrenfest relations and the Prigogine-Defay ratio. As a second part, the approach connects the response of macroscopic observables to a field change with their temporal fluctuations, and with the fluctuation-dissipation relation, in a generalized non-equilibrium way.
description: 12 pages, including 2 figures. To appear in: 8th Tohwa University Int'l Symposium on Slow Dynamics in Complex Systems
Magnetic field effect on the chiral magnetism of noncentrosymmetric UPtGe: experiment and theory
Creators: name: Miyake, Atsushi
name: Sandratskii, Leonid M.
name: Nakamura, Ai
name: Honda, Fuminori
name: Shimizu, Yusei
name: Li, 3 Dexin
name: Homma, Yoshiya
name: Tokunaga, Masashi
name: Aoki, Dai
Publisher: name: arXiv
Year: 2018
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: The effect of differently oriented magnetic field on chiral incommensurate helimagnet UPtGe is studied both experimentally and theoretically. The magnetization measurements up to the field above the saturation have revealed an isotropic magnetic response below 20 T and a remarkable nonmonotonic anisotropy in high fields. Moreover, the two principally different phase transitions from the noncollinear incommensurate to the field-induced ferromagnetic state have been observed. These properties are successfully explained by density-functional theory calculations taking into account the noncollinearity of the magnetic structures, arbitrary directed magnetic field, and relativistic effects. We also estimate the strength of different competing magnetic interactions and discuss possible scenarios of the field-induced phase transformations.
description: 7 pages, 6 figures, 1 table
Onthophagus kuatunensis Balthasar 1942
Creators: name: Bezděk, Aleš
name: Hájek, Jiří
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Onthophagus
Onthophagus kuatunensis

description: Onthophagus kuatunensis Balthasar, 1942
 Onthophagus kuatunensis Balthasar, 1942b: 120.
Two syntypes are deposited in NMPC (ex coll. V. Balthasar):
SYNTYPE (unsexed specimen): ‘Kuatun (2300m) 27,40n.Br. / 117,40ö.L. J. Klapperich [p] / 6.5. [hw] 1938 (Fukien) [p, violet label] // Typus [p, red label, black frame] // Onthophagus / kuatunensis / n.sp. Typus! [hw] / Dr. V. Balthasar det. [p]’.
SYNTYPE (unsexed specimen): ‘ China. / Prov. Yunnan. / Vallis flumin. / Soling - ho. [p] // Typus [p, red label, black frame] // Onthophagus / kuatunensis / n.sp. Typ [hw] / Dr. V. Balthasar det. [p]’.
 Current status. Onthophagus (Parascatonomus) kuatunensis Balthasar, 1942, see KABAKOV (1992).
description: Published as part of Bezděk, Aleš & Hájek, Jiří, 2013, Catalogue of type specimens of beetles (Coleoptera) deposited in the National Museum, Prague, Czech Republic, pp. 387-442 in Acta Entomologica Musei Nationalis Pragae 53 (1) on page 411, DOI: 10.5281/zenodo.5739743
Additional file 6 of Health inequities and clustering of fever, acute respiratory infection, diarrhoea and wasting in children under five in low- and middle-income countries: a Demographic and Health Surveys analysis
Creators: name: Winskill, Peter
name: Hogan, Alexandra B.
name: Thwing, Julie
name: Mwandigha, Lazaro
name: Walker, Patrick G. T.
name: Lambert, Ben
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 6. Model fit. Posterior predictive checks, AUC and posterior predictive spatial checks.
A critical appraisal of the SED fitting method to estimate photometric redshifts
Creators: name: Massarotti, M.
name: Iovino, A.
name: Buzzoni, A.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We discuss the stability of the photometric redshift estimate obtained with the SED fitting method with respect to the choice of the galaxy templates. Within the observational uncertainty and photometric errors, we find satisfactory agreement among different sets of theoretical and empirical templates using the Hubble Deep Field North as a target galaxy sample. Our results suggest that, especially at high redshift, the description of the physical processes of photon absorption in the interstellar and intergalactic medium plays a dominant role in the redshift estimate. The specific choice of the template set, as long as this includes both normal and starburst galaxies, is in comparison a minor issue.
description: 12 pages, 11 encapsulated postscript figures, LateX, accepted for publication in A&A
MOESM3 of Creation of a functional hyperthermostable designer cellulosome
Creators: name: Kahn, Amaranta
name: MoraĂŻs, Sarah
name: Galanopoulou, Anastasia
name: Daehwan Chung
name: Sarai, Nicholas
name: Hengge, Neal
name: Hatzinikolaou, Dimitris
name: Himmel, Michael
name: Bomble, Yannick
name: Bayer, Edward
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Ecology
subject: Cancer
subject: 60506 Virology

description: Additional file 3: Figure S2. ELISA-based assay to confirm (A) the dockerin-binding functionality of the chimaeric enzyme and (B) the cohesin-binding specificity of ScafGTV. In A, plates were coated with the target dockerin-bearing enzyme, and CBM-Cohesin was then introduced. In B, plates were coated with the scaffoldin, and xylanase fused to the indicated dockerins was then allowed to interact with the cohesins of ScafGTV. Primary anti-rabbit anti-CBM and anti-xylanase, respectively, were then applied, followed by secondary goat anti-rabbit antibody conjugated to an HRP (horseradish peroxidase) [60]. The procedure of Barak, et al. [60] was followed for these experiments.
RELF: Robust Regression Extended with Ensemble Loss Function
Creators: name: Hajiabadi, Hamideh
name: Monsefi, Reza
name: Yazdi, Hadi Sadoghi
Publisher: name: arXiv
Year: 2018
Subjects: subject: Machine Learning (cs.LG)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: Ensemble techniques are powerful approaches that combine several weak learners to build a stronger one. As a meta-learning framework, ensemble techniques can easily be applied to many machine learning methods. Inspired by ensemble techniques, in this paper we propose an ensemble loss functions applied to a simple regressor. We then propose a half-quadratic learning algorithm in order to find the parameter of the regressor and the optimal weights associated with each loss function. Moreover, we show that our proposed loss function is robust in noisy environments. For a particular class of loss functions, we show that our proposed ensemble loss function is Bayes consistent and robust. Experimental evaluations on several datasets demonstrate that our proposed ensemble loss function significantly improves the performance of a simple regressor in comparison with state-of-the-art methods.
description: 18 Pages, 7 figures, Accepted in Applied Intelligence- Springer The International Journal of Research on Intelligent Systems for Real Life Complex Problems
Conductance and Shot Noise for Particles with Exclusion Statistics
Creators: name: Isakov, Serguei B.
name: Martin, Thierry
name: Ouvry, Stéphane
Publisher: name: arXiv
Year: 1998
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The first quantized Landauer approach to conductance and noise is generalized to particles obeying exclusion statistics. We derive an explicit formula for the crossover between the shot and thermal noise limits and argue that such a crossover can be used to determine experimentally whether charge carriers in FQHE devices obey exclusion statistics.
description: 4 pages, revtex, 1 eps figure included
Additional file 1 of Arts engagement supports social connectedness in adulthood: findings from the HEartS Survey
Creators: name: Perkins, Rosie
name: Mason-Bertrand, Adele
name: Tymoszuk, Urszula
name: Spiro, Neta
name: Gee, Kate
name: Williamon, Aaron
Publisher: name: figshare
Year: 2021
Subjects: subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: Additional file 1.
Singly Cabibbo suppressed decays of $Λ_{c}^+$ with SU(3) flavor symmetry
Creators: name: Geng, Chao-Qiang
name: Liu, Chia-Wei
name: Tsai, Tien-Hsueh
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: We analyze the weak processes of anti-triplet charmed baryons decaying to octet baryons and mesons with the SU(3) flavor symmetry and topological quark diagram scheme. We study the decay branching ratios without neglecting the contributions from ${\cal O}(\overline{15})$ for the first time in the SU(3) flavor symmetry approach. The fitting results for the Cabibbo allowed and suppressed decays of $Λ_{c}^+$ are all consistent with the experimental data. We predict all singly Cabibbo suppressed decays. In particular, we find that ${\cal B}(Λ_c^+\to p π^0)=(1.3\pm0.7)\times 10^{-4}$, which is slightly below the current experimental upper limit of $2.7\times 10^{-4}$ and can be tested by the ongoing experiment at BESIII as well as the future one at Belle-II.
description: 11 pages, 2 figure, revised version accepted by PLB