cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Periphyllus
Creators: name: Wieczorek, Karina
name: Junkiert, Łukasz
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Aphidomorpha
Aphididae
Periphyllus

description: Key to known males of European species of the genus Periphyllus
1. Apical segment of rostrum with more than 10 accessory hairs............................................ P. singeri
-. Apical segment of rostrum with less than 10 accessory hairs.................................................... 2
2. Hind tibiae uniformly black................................................................. P. californiensis
-. Hind tibiae pale, dusky or dark only on base and apex........................................................ 3
3. Hind tibiae dark on base and apex, pale at middle part............................................. P. testudinaceus
- Hind tibiae pale or dusky............................................................................... 4
4. Cauda helmet-shaped or knobbed......................................................................... 5
-. Cauda broadly rounded................................................................................. 7
5. Cauda helmet-shaped......................................................................... P. lyropictus
-. Cauda knobbed....................................................................................... 6
6. VIb very long, about 0.9 times antennal segment III; distal part of tibiae dark............................ P. hirticornis
-. VIb about 0.85 times antennal segment III; distal part of tibiae pale...................................... P. obscurus
7. Siphunculi short, 0.5–0.6 times HT II...................................................................... 8
-. Siphunculi long, 0.75 times or as long as HT II.............................................................. 9
8. Siphunculi dark; antennal segment III with more than 40 rhinaria....................................... P. coracinus
-. Siphunculi pale; antennal segment III with less than 40 rhinaria........................................ P. rhenanus
9. VIb more than 3.3 times VIa................................................................... P. bulgaricus
-. VIb less than 3.3 times VIa............................................................................. 10
10. VIb less than 0.55 times antennal segment III...................................................... P. acericola
-. VIb more than 0.55 times antennal segment III....................................................... P. aceris
description: Published as part of Wieczorek, Karina & Junkiert, Łukasz, 2011, Description of sexuales of Periphyllus singeri (Börner) (Hemiptera, Aphidoidea: Chaitophorinae), pp. 63-68 in Zootaxa 2872 on page 67, DOI: 10.5281/zenodo.208045
Additional file 1 of Life style and interaction with microbiota in prostate cancer patients undergoing radiotherapy: study protocol for a randomized controlled trial
Creators: name: Gnagnarella, Patrizia
name: Marvaso, Giulia
name: Jereczek-Fossa, Barbara Alicja
name: de Cobelli, Ottavio
name: Simoncini, Maria Claudia
name: Nevola Teixeira, Luiz Felipe
name: Sabbatini, Annarita
name: Pravettoni, Gabriella
name: Johansson, Harriet
name: Nezi, Luigi
name: Muto, Paolo
name: Borzillo, Valentina
name: Celentano, Egidio
name: Crispo, Anna
name: Pinto, Monica
name: Cavalcanti, Ernesta
name: Gandini, Sara
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1: Supplementary Table 1. Measures collected over the course of the MicroStyle study.
Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris
Creators: name: Rhodes, Johanna
name: Abdolrasouli, Alireza
name: A. Farrer, Rhys
name: A. Cuomo, Christina
name: M. Aanensen, David
name: Armstrong-James, Darius
name: C. Fisher, Matthew
name: Schelenz, Silke
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: Evolutionary Biology
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Candida auris was first described in 2009, and it has since caused nosocomial outbreaks, invasive infections, and fungaemia across at least 19 countries on five continents. An outbreak of C. auris occurred in a specialized cardiothoracic London hospital between April 2015 and November 2016, which to date has been the largest outbreak in the UK, involving a total of 72 patients. To understand the genetic epidemiology of C. auris infection both within this hospital and within a global context, we sequenced the outbreak isolate genomes using Oxford Nanopore Technologies and Illumina platforms to detect antifungal resistance alleles and reannotate the C. auris genome. Phylogenomic analysis placed the UK outbreak in the India/Pakistan clade, demonstrating an Asian origin; the outbreak showed similar genetic diversity to that of the entire clade, and limited local spatiotemporal clustering was observed. One isolate displayed resistance to both echinocandins and 5-flucytosine; the former was associated with a serine to tyrosine amino acid substitution in the gene FKS1, and the latter was associated with a phenylalanine to isoleucine substitution in the gene FUR1. These mutations add to a growing body of research on multiple antifungal drug targets in this organism. Multiple differential episodic selection of antifungal resistant genotypes has occurred within a genetically heterogenous population across this outbreak, creating a resilient pathogen and making it difficult to define local-scale patterns of transmission and implement outbreak control measures.
Influence Of Oxygen Vacancies On Structural And Electrical Properties Ferromagnetism Imposed Ferroelectric Material
Creators: name: P. Esther Rubavathi
name: L.Venkidu
name: B.Sundarakannan
Publisher: name: Zenodo
Year: 2018

description: The talk presented at 29th Annual General Meeting Of Materials Research Society Of India And National Symposium On Advances In Functional And Exotic Materials.
Additional file 2 of Life style and interaction with microbiota in prostate cancer patients undergoing radiotherapy: study protocol for a randomized controlled trial
Creators: name: Gnagnarella, Patrizia
name: Marvaso, Giulia
name: Jereczek-Fossa, Barbara Alicja
name: de Cobelli, Ottavio
name: Simoncini, Maria Claudia
name: Nevola Teixeira, Luiz Felipe
name: Sabbatini, Annarita
name: Pravettoni, Gabriella
name: Johansson, Harriet
name: Nezi, Luigi
name: Muto, Paolo
name: Borzillo, Valentina
name: Celentano, Egidio
name: Crispo, Anna
name: Pinto, Monica
name: Cavalcanti, Ernesta
name: Gandini, Sara
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 2: Supplementary Table 2. Statistical consideration for the Sample size calculation and the analytic plan.
Phlogiellus daweiensis Sivayyapram & Kunsete & Songsangchote & Thanoosing & Traiyasut & Warrit 2020, sp. nov.
Creators: name: Sivayyapram, Varat
name: Kunsete, Chawakorn
name: Songsangchote, Chaowalit
name: Thanoosing, Chawatat
name: Traiyasut, Prapun
name: Warrit, Natapot
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Theraphosidae
Phlogiellus
Phlogiellus daweiensis

description: Phlogiellus daweiensis Sivayyapram & Warrit, sp. nov.
zoobank.org:act: 098A7449-8D97-432C-B024-001E8E927AC6
Type material. Holotype ♂. MYANMAR: Dawei (14°4.272’ N, 98°15.913’ E) 179 m, 4 May 2018, Warrit N. et al. (ARA-2018-159). Paratypes as noted in Sivayyapram et al. (2020). All deposited in Chulalongkorn University Museum of Zoology (CUMZ), Bangkok.
Diagnosis. Males differ from those of other Phlogiellus species, except P. moniqueverdezae, in possessing long white setae dorsally on tibiae and metatarsi I and II (Fig. 1a) and from the latter species in the absence of a maxillary lyra and embolus process (Figs 3b, 5). Females differ from those of P. moniqueverdezae in the less swollen tip of the spermathecae and the narrower spermathecal groove (Fig. 9).
Description. see Sivayyapram et al. 2020.
description: Published as part of Sivayyapram, Varat, Kunsete, Chawakorn, Songsangchote, Chaowalit, Thanoosing, Chawatat, Traiyasut, Prapun & Warrit, Natapot, 2020, Two new species of the Southeast Asian Dwarf tarantula genus Phlogiellus Pocock 1887 (Theraphosidae, Selenocosmiinae) and a discussion on the taxonomic problem of the genus: Addendum, pp. 599-600 in Zootaxa 4869 (4) on page 599, DOI: 10.11646/zootaxa.4869.4.7, http://zenodo.org/record/4423260
A Profile of U.S. Comprehensive Health Planning Areas
Creators: name: Fitzwilliams, Jeannette
name: Fitzwilliams, Jeannette
Publisher: name: Unknown
Year: 1976
Subjects: Community/Rural/Urban Development
Health Economics and Policy

description: Excerpt from the report preface: The rural health problem is one of identifying uniquely rural characteristics and of identifying health problem solutions in light of these rural characteristics and needs. It may be divided into three parts: (1) adapting health care delivery systems to meet the needs of a sparse and dispersed population, often with transportation barriers; (2) making urban decisionmakers aware of rural problems, needs, and attitudes, so they will adequately provide for rural areas; and (3) reaching the rural population effectively to educate and motivate them to make the best use of the services provided. This report provides data that may help solve some of these rural problems.
Inflexibly enacted traditional masculinity norms (IE-TM NS) and their impact on adolescent and young adult depression: the hybrid case study of “Tommy”.
Creators: name: Dewey, Christopher
Publisher: name: No Publisher Supplied
Year: 2020

description: The purpose of this study is to explore and discuss the effects of inflexibly enacted traditional masculinity norms (IE-TMNs) on adolescent and young adult males with depression and how to address such issues in therapy. This study provides a literature review of the subject of IE-TMNs and how such a worldview holds a potentially negative influence and impact on the physical and mental health of boys and young men. Specifically, the study aims to highlight how these beliefs, attributes, and values influence the extent to which these individuals seek help, express emotion, and utilize healthy coping skills when experiencing depressive symptoms and how such behaviors can be addressed in therapy. Treatment considerations are explored through the hybrid case example of “Tommy,” a depiction of a depressed college freshman following IE-TMNs while going through a difficult life transition. A fictional case, Tommy serves as a composite character informed by real life psychotherapy cases and clinical examples found in relevant literature. Tommy’s course of treatment depicts potential clinical issues that could come up when working with a depressed male client with strong internalized masculinity norms and how some of these themes can be adequately addressed to create a more flexible masculine identity. Through use of a qualitative, disciplined inquiry approach, I explore therapeutic interventions that could be utilized to meet the unique needs of such a client within the context of historical, contextual, and cultural factors. Tommy’s case material is analyzed qualitatively and quantitatively in accordance with the pragmatic case study research format (Fishman, 2013). The hybrid case of Tommy explores how client-centered therapy, motivational interviewing, harm reduction interventions, and cognitive-behavioral interventions can be integrated to assist adolescent boys and young men with strongly internalized and rigid beliefs about masculinity, while also utilizing Bronfenbrenner’s ecological systems theory to explore the proximal and distal factors in one’s environment that contribute to such a worldview. The hybrid case study of Tommy is designed to serve as a resource for therapists working with clients with IE-TMNs and provides guidance about how to alter unhelpful coping strategies; increase emotional expression and help-seeking behaviors; and explore personal beliefs, goals, and values. This dissertation concludes with a critical discussion of future directions for research on this topic, as well as the advantages and limitations of the hybrid case study design.
Emergence of a novel mobile colistin resistance gene, mcr-8, in NDM-producing Klebsiella pneumoniae
Creators: name: Wang, Xiaoming
name: Wang, Yao
name: Zhou, Ying
name: Li, Jiyun
name: Yin, Wenjuan
name: Wang, Shaolin
name: Zhang, Suxia
name: Shen, Jianzhong
name: Shen, Zhangqi
name: Wang, Yang
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: The rapid increase in carbapenem resistance among gram-negative bacteria has renewed focus on the importance of polymyxin antibiotics (colistin or polymyxin E). However, the recent emergence of plasmid-mediated colistin resistance determinants (mcr-1, -2, -3, -4, -5, -6, and -7), especially mcr-1, in carbapenem-resistant Enterobacteriaceae is a serious threat to global health. Here, we characterized a novel mobile colistin resistance gene, mcr-8, located on a transferrable 95,983-bp IncFII-type plasmid in Klebsiella pneumoniae. The deduced amino-acid sequence of MCR-8 showed 31.08%, 30.26%, 39.96%, 37.85%, 33.51%, 30.43%, and 37.46% identity to MCR-1, MCR-2, MCR-3, MCR-4, MCR-5, MCR-6, and MCR-7, respectively. Functional cloning indicated that the acquisition of the single mcr-8 gene significantly increased resistance to colistin in both Escherichia coli and K. pneumoniae. Notably, the coexistence of mcr-8 and the carbapenemase-encoding gene blaNDM was confirmed in K. pneumoniae isolates of livestock origin. Moreover, BLASTn analysis of mcr-8 revealed that this gene was present in a colistin- and carbapenem-resistant K. pneumoniae strain isolated from the sputum of a patient with pneumonia syndrome in the respiratory intensive care unit of a Chinese hospital in 2016. These findings indicated that mcr-8 has existed for some time and has disseminated among K. pneumoniae of both animal and human origin, further increasing the public health burden of antimicrobial resistance.
Phlogiellus raveni Sivayyapram & Kunsete & Songsangchote & Thanoosing & Traiyasut & Warrit 2020, sp. nov.
Creators: name: Sivayyapram, Varat
name: Kunsete, Chawakorn
name: Songsangchote, Chaowalit
name: Thanoosing, Chawatat
name: Traiyasut, Prapun
name: Warrit, Natapot
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Theraphosidae
Phlogiellus
Phlogiellus raveni

description: Phlogiellus raveni Sivayyapram & Warrit, sp. nov.
zoobank.org:act: D9FE8B1B-7AAE-4626-94E6-7C311629983B
Type material. Holotype ♂. PHILIPPINES, Talamban, Cebu City, Small forest behind University of San Carlos, 16– 18 August 1986, Gerd Alberti (QM S 22518 a). Paratypes 1 ♀ allotype, same data as holotype (QM S22518 b), deposited in the Queensland Museum, Brisbane.
Diagnosis. Phlogiellus raveni sp. nov. differs from other Phlogiellus species, except P. aper, P. brevipes, P. mutus, P. bundokalbo, P. watasei, P. moniqueverdezae, P. longipalpus, and Phlogiellus daweiensis sp. nov. in lacking a maxillary lyra in both males and females. Phlogiellus raveni sp. nov. differs from those of the alyrate species of Phlogiellus, in the different shape of the male palpal bulb and shape of the female spermathecae (Figs 13, 17).
Description. see Sivayyapram et al. 2020.
description: Published as part of Sivayyapram, Varat, Kunsete, Chawakorn, Songsangchote, Chaowalit, Thanoosing, Chawatat, Traiyasut, Prapun & Warrit, Natapot, 2020, Two new species of the Southeast Asian Dwarf tarantula genus Phlogiellus Pocock 1887 (Theraphosidae, Selenocosmiinae) and a discussion on the taxonomic problem of the genus: Addendum, pp. 599-600 in Zootaxa 4869 (4) on page 599, DOI: 10.11646/zootaxa.4869.4.7, http://zenodo.org/record/4423260
title: BCG-induced focal granulomatous prostatitis mimicking prostate cancer
Creators: name: Negrao, Eduardo
Publisher: name: EURORAD
Year: 2022
Subjects: subject: Uroradiology & genital male imaging
subject: Genital / Reproductive system male
subject: Oncology
subject: Pelvis
subject: Urinary Tract / Bladder
subject: MR
subject: MR-Diffusion/Perfusion
subject: Biopsy
subject: Cancer
subject: Infection
subject: Clinical Cases

description: Clinical History: A 52-year-old male patient, with previous bladder urothelial carcinoma treated with intravesical Bacillus Calmette-Guérin (BCG), presented a prostatic lesion in a routine computed tomography scan. PSA levels were normal, patient was asymptomatic and digital rectal examination was unsuspicious.

Magnetic resonance imaging (MRI) was requested, which was followed by prostate biopsy.

description: 52 years, male
Identification of potential urine proteins and microRNA biomarkers for the diagnosis of pulmonary tuberculosis patients
Creators: name: Wang, Jieru
name: Zhu, Xiaojie
name: Xiong, Xuekai
name: Ge, Pan
name: Liu, Han
name: Ren, Ningning
name: Khan, Farhan Anwar
name: Zhou, Xia
name: Zhang, Li
name: Yuan, Xu
name: Chen, Xi
name: Chen, Yingyu
name: Hu, Changmin
name: Robertson, Ian D.
name: Chen, Huanchun
name: Guo, Aizhen
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Physiology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Cancer

description: This study identified urinary biomarkers for tuberculosis (TB) diagnosis. The urine proteomic profiles of 45 pulmonary tuberculosis patients prior to anti-TB treatment and 45 healthy controls were analyzed and compared using two-dimensional electrophoresis with matrix-assisted laser desorption/ionization time of flight mass spectrometry. Nineteen differentially expressed proteins were identified preliminarily, and western blotting and qRT-PCR were performed to confirm these changes at the translational and transcriptional levels, respectively, using samples from 122 additional pulmonary tuberculosis patients and 73 additional healthy controls. Two proteins, mannose-binding lectin 2 and a 35-kDa fragment of inter-α-trypsin inhibitor H4, exhibited the highest differential expression. We constructed a protein-microRNA interaction network that primarily involved complement and inflammatory responses. Eleven microRNAs from microRNA-target protein interactions were screened and validated using qRT-PCR with some of the above samples, including 97 pulmonary tuberculosis patients and 48 healthy controls. Only miR-625-3p exhibited significant differential expression (p < 0.05). miR-625-3p was increased to a greater extent in samples of smear-positive than smear-negative patients. miR-625-3p was predicted to target mannose-binding lectin 2 protein. A binary logistic regression model based on miR-625-3p, mannose-binding lectin 2, and inter-α-trypsin inhibitor H4 was further established. This three-biomarker combination exhibited better performance for tuberculosis diagnosis than individual biomarkers or any two-biomarker combination and generated a diagnostic sensitivity of 85.87% and a specificity of 87.50%. These novel urine biomarkers may significantly improve tuberculosis diagnosis.
title: Saccular type of limited dorsal myeloschisis
Creators: name: Gala, Foram
Publisher: name: EURORAD
Year: 2022
Subjects: subject: Neuroradiology
subject: Neuroradiology spine
subject: Paediatric
subject: MR
subject: Clinical Cases

description: Clinical History: A 3-day-old female presented with complaints of swelling over back in lumbar region since birth, born of non-consanguineous marriage with no other significant birth history. 

Examination findings: There was a large cystic swelling in lumbosacral region suspicious for meningomyelocele (Fig 1). Limb movements were normal with no neurological deficit.

description: 3 days, female
Additional file 1 of Physical activity and healthcare utilization in France: evidence from the European Health Interview Survey (EHIS) 2014
Creators: name: Jemna, Dănuț-Vasile
name: David, Mihaela
name: Depret, Marc-Hubert
name: Ancelot, Lydie
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Science Policy
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1: Appendix. Tables A1-A19b.
"We cry for change:" collective action and Puerto Rican New York’s postwar housing crisis, 1945-1974
Creators: name: Rodriguez, Tyler Isaiah Crespo
Publisher: name: No Publisher Supplied
Year: 2022

description: As early as 1945, Puerto Rican migrants in New York City were being failed by the city’s government and landlords. Housing in the largely Puerto Rican enclaves of El Barrio (East Harlem) and the Upper West Side was significantly inadequate. The streets were dirty, and the housing infrastructure crumbling. From this housing crisis arose organized community advocacy and activism in the city’s Puerto Rican community.This thesis traces the history of the housing crisis Puerto Ricans in New York faced from the end of World War II through 1974. Special focus is given to the lived experiences of tenants. Through the usage of a variety of primary and secondary sources, this thesis argues that the sociopolitical marginalization and substandard housing of the immediate postwar years combined with public and private urban renewal efforts in the 1960s contributed to a critical pushback from Puerto Rican New Yorkers in the form of community advocacy organizations and, eventually, the formation of radical action-based groups such as the New York Young Lords and Operation Move-In.While the movements for better housing were ultimately unsuccessful in enacting large-scale systemic change, Puerto Ricans were able to gain some level of political power in New York City through their community organizing and advocacy for better housing. Their collective power, however, was not sufficient to ensure that the post-World War II housing crisis would end as this would have required more than the ethnic Puerto Rican population could have done on its own. As argued by various scholars since the 1980s, the newest recognized ethnic groups in New York had the least amount of political power and were quickly cast aside in city politics. Despite their legal citizenship, New York’s Puerto Ricans were not exempt from this. The history of Puerto Rican New York’s postwar housing crisis is not a history of change and success—it is a history of a community recognizing its potential to organize and gain some level of power despite being subjected to political, social, and economic marginalization.
Attenuation of highly pathogenic avian influenza A(H5N1) viruses in Indonesia following the reassortment and acquisition of genes from low pathogenicity avian influenza A virus progenitors
Creators: name: Dharmayanti, Ni Luh Putu Indi
name: Thor, Sharmi W.
name: Zanders, Natosha
name: Hartawan, Risza
name: Ratnawati, Atik
name: Jang, Yunho
name: Rodriguez, Marisela
name: Suarez, David L.
name: Samaan, Gina
name: Pudjiatmoko
name: Davis, C. Todd
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Molecular Biology
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: The highly pathogenic avian influenza (HPAI) A(H5N1) virus is endemic in Indonesian poultry and has caused sporadic human infection in Indonesia since 2005. Surveillance of H5N1 viruses in live bird markets (LBMs) during 2012 and 2013 was carried out to provide epidemiologic and virologic information regarding viral circulation and the risk of human exposure. Real-time RT-PCR of avian cloacal swabs and environmental samples revealed influenza A-positive specimens, which were then subjected to virus isolation and genomic sequencing. Genetic analysis of specimens collected at multiple LBMs in Indonesia identified both low pathogenicity avian influenza (LPAI) A(H3N8) and HPAI A(H5N1) viruses belonging to clade 2.1.3.2a. Comparison of internal gene segments among the LPAI and HPAI viruses revealed that the latter had acquired the PB2, PB1, and NS genes from LPAI progenitors and other viruses containing a wild type (wt) genomic constellation. Comparison of murine infectivity of the LPAI A(H3N8), wt HPAI A(H5N1) and reassortant HPAI A(H5N1) viruses showed that the acquisition of LPAI internal genes attenuated the reassortant HPAI virus, producing a mouse infectivity/virulence phenotype comparable to that of the LPAI virus. Comparison of molecular markers in each viral gene segment suggested that mutations in PB2 and NS1 may facilitate attenuation. The discovery of an attenuated HPAI A(H5N1) virus in mice that resulted from reassortment may have implications for the capability of these viruses to transmit and cause disease. In addition, surveillance suggests that LBMs in Indonesia may play a role in the generation of reassortant A(H5) viruses and should be monitored.
Attenuation of highly pathogenic avian influenza A(H5N1) viruses in Indonesia following the reassortment and acquisition of genes from low pathogenicity avian influenza A virus progenitors
Creators: name: Dharmayanti, Ni Luh Putu Indi
name: W. Thor, Sharmi
name: Zanders, Natosha
name: Hartawan, Risza
name: Ratnawati, Atik
name: Jang, Yunho
name: Rodriguez, Marisela
name: L. Suarez, David
name: Samaan, Gina
name: Pudjiatmoko
name: Todd Davis, C.
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Molecular Biology
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: The highly pathogenic avian influenza (HPAI) A(H5N1) virus is endemic in Indonesian poultry and has caused sporadic human infection in Indonesia since 2005. Surveillance of H5N1 viruses in live bird markets (LBMs) during 2012 and 2013 was carried out to provide epidemiologic and virologic information regarding viral circulation and the risk of human exposure. Real-time RT-PCR of avian cloacal swabs and environmental samples revealed influenza A-positive specimens, which were then subjected to virus isolation and genomic sequencing. Genetic analysis of specimens collected at multiple LBMs in Indonesia identified both low pathogenicity avian influenza (LPAI) A(H3N8) and HPAI A(H5N1) viruses belonging to clade 2.1.3.2a. Comparison of internal gene segments among the LPAI and HPAI viruses revealed that the latter had acquired the PB2, PB1, and NS genes from LPAI progenitors and other viruses containing a wild type (wt) genomic constellation. Comparison of murine infectivity of the LPAI A(H3N8), wt HPAI A(H5N1) and reassortant HPAI A(H5N1) viruses showed that the acquisition of LPAI internal genes attenuated the reassortant HPAI virus, producing a mouse infectivity/virulence phenotype comparable to that of the LPAI virus. Comparison of molecular markers in each viral gene segment suggested that mutations in PB2 and NS1 may facilitate attenuation. The discovery of an attenuated HPAI A(H5N1) virus in mice that resulted from reassortment may have implications for the capability of these viruses to transmit and cause disease. In addition, surveillance suggests that LBMs in Indonesia may play a role in the generation of reassortant A(H5) viruses and should be monitored.
Additional file 1 of Applying the RE-AIM framework to evaluate a holistic caregiver-centric hospital-to-home programme: a feasibility study on Carer Matters
Creators: name: Chan, Ee Yuee
name: Wu, Ling Ting
name: Ng, Emmalene Joo Yong
name: Glass, George Frederick
name: Tan, Robyn Hwee Teng
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy

description: Additional file 1.
QIIME2 codes for cyanobacterial ITS sequence analysis
Creators: name: Huang, Sijun
Publisher: name: figshare
Year: 2022
Subjects: subject: 60504 Microbial Ecology
subject: FOS: Biological sciences
subject: Ecology
subject: 40501 Biological Oceanography
subject: FOS: Earth and related environmental sciences

description: QIIME2 codes for cyanobacterial 16S-23S rRNA ITS sequence analysis for next generation sequencing data
Automatic and Accurate Classification of Hotel Bathrooms from Images with Deep Learning
Creators: name: temiz, hakan
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 460306
subject: Image processing
classificationCode: 461103
subject: Deep learning
classificationCode: 350803
subject: Tourism management
classificationCode: 350605
subject: Marketing management (incl. strategy and customer relations)
classificationCode: 460304
subject: Computer vision
classificationCode: 350806
subject: Tourist behaviour and visitor experience

description: Hotel bathrooms are one of the most important places in terms of customer satisfaction, and where the most complaints are reported. To share their experiences, guests rate hotels, comment, and share images of their positive or negative ratings. An important part of the room images shared by guests is related to bathrooms. Guests tend to prove their satisfaction or dissatisfaction with the bathrooms with images in their comments. These Positive or negative comments and visuals potentially affect the prospective guests. In this study, two different versions of a deep learning algorithm were designed to classify hotel bathrooms as satisfactory (good) or unsatisfactory (bad, when any defects such as dirtiness, deficiencies, malfunctions were present) by analyzing images. The best-performer between the two models was determined as a result of a series of extensive experimental studies. The models were trained for each of 144 combinations of 5 hyper-parameter sets with a data set containing more than 11 thousand bathroom images, specially created for this study. The “HotelBath” data set was shared also with the community with this study. Four different image sizes were taken into consideration: 128, 256, 512 and 1024 pixels in both directions. The classification performances of the models were measured with several metrics. Both algorithms showed very attractive performances even with many combinations of hyper-parameters. They can classify bathroom images with very high accuracy. Suh that the top algorithm achieved an accuracy of 92.4% and an AUC (area under the curve) score of 0.967. In addition, other metrics also proved the success of the algorithm. The proposed method can allow the rapid, accurate and automatic detection of such undesired circumstances in hotel bathrooms from images. Such a detection system can allow hotel management to take necessary actions quickly to remedy such unsatisfactory cases
Additional file 2 of Applying the RE-AIM framework to evaluate a holistic caregiver-centric hospital-to-home programme: a feasibility study on Carer Matters
Creators: name: Chan, Ee Yuee
name: Wu, Ling Ting
name: Ng, Emmalene Joo Yong
name: Glass, George Frederick
name: Tan, Robyn Hwee Teng
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy

description: Additional file 2.
Tracking microevolution events among ST11 carbapenemase-producing hypervirulent Klebsiella pneumoniae outbreak strains
Creators: name: Dong, Ning
name: Yang, Xuemei
name: Zhang, Rong
name: Chan, Edward Wai-Chi
name: Chen, Sheng
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: The recent convergence of genetic elements encoding phenotypic carbapenem-resistance and hypervirulence within a single Klebsiella pneumoniae host strain represents a major public concern. To obtain a better understanding of the genetic characteristic of this emerging ‘superbug’, the complete genomes of 3 isolates of ST11 carbapenemase-producing hypervirulent K. pneumoniae were generated using the Oxford nanopore MinION platform. Comparative whole-genome analysis identified 13 SNPs and 3 major regions of indels in the chromosomes of the clonally disseminated isolates. ISKpn18-mediated disruption in the mgrB gene, which was associated with colistin resistance, was identified in two later strains, leading to the emergence of hypervirulent K. pneumoniae that was simultaneously colistin- and carbapenem-resistant. Five plasmids were recovered from each isolate, including a 178 Kb IncHI1B/FIB-type rmpA2-bearing virulence plasmid, a 177.5 Kb IncFII/R self-transferable blaKPC-2-bearing MDR plasmid, a 99.7 Kb Incl1 plasmid and two ColRNAI-type plasmids of sizes of 11.9 and 5.6 Kb, respectively. The presence of homologous regions between the non-conjugative virulence plasmid and conjugative blaKPC-2-bearing MDR plasmid suggests that transmission of the virulence plasmid from ST23 K. pneumoniae to ST11 CRKP may be mediated by the co-integrated transfer of these two plasmids. Emergence of colistin-resistant and carbapenemase-producing hypervirulent K. pneumoniae strains further emphasizes the urgency for the establishment of a coordinated global program to eradicate hypervirulent and/or pan-drug-resistant strains of K. pneumoniae from clinical settings and the community.
Additional file 1 of Revealing the difference of α-amylase and CYP6AE76 gene between polyphagous Conogethes punctiferalis and oligophagous C. pinicolalis by multiple-omics and molecular biological technique
Creators: name: Jing, Dapeng
name: Prabu, Sivaprasath
name: Zhang, Tiantao
name: Bai, Shuxiong
name: He, Kanglai
name: Zhang, Yongjun
name: Wang, Zhenying
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1.
Long-term HEV carriers without antibody seroconversion among eligible immunocompetent blood donors
Creators: name: Wen, Gui-Ping
name: Chen, Chang-Rong
name: Song, Xiu-Yu
name: Tang, Zi-Min
name: Ji, Wen-Fang
name: Wang, Si-Ling
name: Zhang, Ke
name: Zhang, Jun
name: Ou, Shan-Hai
name: Zheng, Zi-Zheng
name: Xia, Ning-Shao
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Hepatitis E virus (HEV) is emerging as a potential threat to the safety of blood transfusions. In many countries and regions endemic for HEV, such as China, blood donors are not routinely tested for HEV infection. In this study, 11747 eligible blood donors were screened for anti-HEV immunoglobulin M (IgM)/immunoglobulin G (IgG) and HEV RNA and antigen in China. Twenty-four donors who were positive for both HEV antigen and RNA were followed for ≥ 70 days, and none of these donors reported clinical hepatitis or illness. At least 1 follow-up sample was provided by 17 donors, including 10 with viremia and/or antigenemia for ≥ 70 days and 3 with antigen and RNA positivity for >90 days. Fourteen of the 17 donors did not present with an obvious serologic response during the follow-up period. These results differed from previous reports, in which viremia lasted for 68 days and elicited an antibody response. These donors showed atypical HEV infection progression that differed from that of hepatitis E patients. The presence of these donors presents a challenge for transfusion transmission screening.
Additional file 1 of Are nurse`s needs assessment methods robust enough to recognise palliative care needs in people with dementia? A scoping review
Creators: name: de Wolf-Linder, Susanne
name: Reisinger, Margarete
name: Gohles, Elisabeth
name: Wolverson, Emma L.
name: Schubert, Maria
name: Murtagh, Fliss E. M.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1.
Additional file 1 of Economic evaluation of an incentive-based program to increase physical activity and reduce sedentary behaviour in middle-aged adults
Creators: name: Maple, Jaimie-Lee
name: Ananthapavan, Jaithri
name: Ball, Kylie
name: Teychenne, Megan
name: Moodie, Marj
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 1: Appendix 1. ACHIEVE program component costs (A$2015).
Subadult Virtual Anthropology Database (SVAD) Data Collection Protocol: Cranial Macromorphoscopics
Creators: name: Stull, Kyra E
name: Chu, Elaine Y
name: Wolfe, Christopher A
name: Broehl, Kristen A
name: Vlemincq-Mendieta, Tatiana
name: Pilloud, Marin A
name: Scott, G Richard
name: Spradley, M Kate
name: Corron, Louise K
Publisher: name: Zenodo
Year: 2022
Subjects: virtual anthropology
computed tomography
forensic anthropology
cranial macromophoscopics

description: This document presents the standardized protocol for scoring cranial macromorphoscopic traits on virtual 3D renderings of subadult crania using the Amira visualization software. This protocol was developed as part of National Institute of Justice Award 2019 DU-BX-0039. This version has been updated from the previous one.
description: Funding Source: National Institute of Justice Award 2019 DU-BX-0039
Re-emergence of Lloviu virus in Miniopterus schreibersii bats, Hungary, 2016
Creators: name: Kemenesi, Gábor
name: Kurucz, Kornélia
name: Dallos, Bianka
name: Zana, Brigitta
name: Földes, Fanni
name: Boldogh, Sándor
name: Görföl, Tamás
name: Carroll, Miles W
name: Jakab, Ferenc
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Medicine
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Re-emergence of Lloviu virus in Miniopterus schreibersii bats, Hungary, 2016
Additional file 1 of The self-reference effect as a behavioral indicator of identity disturbances associated with borderline personality features in a non-clinical sample
Creators: name: Maffly-Kipp, Joseph
name: McCredie, Morgan N.
name: Morey, Leslie C.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1. Supplemental Analyses.
Steatomys jacksoni Hayman 1936
Creators: name: Wilson, Don E.
name: Mittermeier, Russell A.
name: Thomas E. Lacher, Jr
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Nesomyidae
Steatomys
Steatomys jacksoni

description: 62. Jackson's Fat Mouse Steatomys jacksoni French: Rat-adipeux de Jackson / German: Jackson-Fettmaus / Spanish: Ratén grueso de Jackson Other common names: Jackson's African Fat Mouse Taxonomy. Steatomys jackson: Hayman, 1936, Wenchi, Ashanti, Ghana. Validity of S. jacksoni is not certain, and more specimens are needed to properly diagnose it. Specimens from Nigeria are significantly smaller than the type specimen and may have been misidentified. Monotypic. Distribution. Known with certainty from W Ghana and also reported from two localities in W Nigeria. Descriptive notes. Head-body c.120 mm, tail ¢.b0 mm, ear c.18 mm, hindfoot c.18 mm. No specific data are available for body weight. Jackson’s Fat Mouse is small, with a noticeably short tail, darker above than below. Fur is soft and dark brown dorsally, clearly demarcated from pure white belly. Chin, throat, and upper chest white. Ears are relatively large and rounded. Limbs are white, with four digits on forefoot and five digits on hindfoot. Specimens from Nigeria have twelve nipples. Habitat. Apparently savanna. The type locality was open habitat on the edge of forest. Food and Feeding. No information. Breeding. No information. Activity patterns. No information. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Data Deficient on The IUCN Red List. At present, Jackson’s Fat Mouse is known from too few specimens at too few localities to be able to assess its conservation status. Bibliography. Anadu (1979b), Happold (2013j), Monadjem et al. (2015), Rosevear (1969), Swanepoel & Schlitter (1978), Van der Straeten & Dieterlen (1992).
description: Published as part of Don E. Wilson, Russell A. Mittermeier & Thomas E. Lacher, Jr, 2017, Nesomyidae, pp. 156-203 in Handbook of the Mammals of the World – Volume 7 Rodents II, Barcelona :Lynx Edicions on page 202, DOI: 10.5281/zenodo.6600357
Magnetoresistance Properties Of Bati1-X-Yfexnbyo3 Ceramics
Creators: name: L.Venkidu
name: M.Veera Gajendra BaBu
name: P .Esther Rubavathi
name: B.Sundarakannan
Publisher: name: Zenodo
Year: 2018

description: The talk presented at 29th Annual General Meeting Of Materials Research Society Of India And National Symposium On Advances In Functional And Exotic Materials.
Petromyscus monticularis
Creators: name: Wilson, Don E.
name: Mittermeier, Russell A.
name: Thomas E. Lacher, Jr
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Nesomyidae
Petromyscus
Petromyscus monticularis

description: 31. Short-eared Pygmy Rock Mouse Petromyscus monticularis French: Petromysque du Brukkaros / German: Brukkaros-Zwergfelsenmaus / Spanish: Raton de roca enano de orejas cortas Other common names: Brukkaros Pygmy Rock Mouse Taxonomy. Praomys monticularis Thomas & Hinton, 1925, “ Gt. Brukaros Mt., near Berseba, [Namibia]. 3500°-5200’ [= 1067-1585 m].” This species is monotypic. Distribution. S Namibia and NW South Africa. Descriptive notes. Head—body 63-93 mm, tail 66-84 mm, ear 10-14 mm, hindfoot 13-17 mm. No specific data are available for body weight. The Short-eared Pygmy Rock Mouse is small, with a long tail. Fur is soft and silky, dark brown dorsally and grayish on belly. Hairs have dark gray base. Ears are relatively short for a species of Petromyscus and rounded. Tail is long but relatively short for a Petromyscus species, and slightly darker above than below. Limbs are off-white, with four digits on forefeet and five digits on hindfeet. It has six nipples. Habitat. Rocky plains such as those at bases of mountains and rocky outcrops. Food and Feeding. The Short-eared Pygmy Rock Mouse is primarily granivorous but also eats insects and green plant material. Breeding. No information. Activity patterns. No information. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Least Concern on The IUCN Red List. The Shorteared Pygmy Rock Mouse occupies rocky habitat that is unlikely to becomethreatened in the near future. Bibliography. Coetzee (2013c), Denys et al. (1995), Jansa et al. (1999), Matson & Blood (1994), Monadjem et al. (2015), Petter (1967), Skinner & Chimimba (2005).
description: Published as part of Don E. Wilson, Russell A. Mittermeier & Thomas E. Lacher, Jr, 2017, Nesomyidae, pp. 156-203 in Handbook of the Mammals of the World – Volume 7 Rodents II, Barcelona :Lynx Edicions on page 193, DOI: 10.5281/zenodo.6600357
Genetic characterization and molecular epidemiological analysis of novel enterovirus EV-B80 in China
Creators: name: Han, Zhenzhi
name: Zhang, Yong
name: Huang, Keqiang
name: Cui, Hui
name: Hong, Mei
name: Tang, Haishu
name: Song, Yang
name: Yang, Qian
name: Zhu, Shuangli
name: Yan, Dongmei
name: Xu, Wenbo
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences

description: Enterovirus B80 (EV-B80) is a newly identified serotype belonging to the enterovirus B species. To date, only two full-length genomic sequences of EV-B80 are available in GenBank, and few studies on EV-B80 have been conducted in China or worldwide. More information and research on EV-B80 is needed to assess its genetic characteristics, phylogenetic relationships, and association with enteroviral diseases. In this study, we report the phylogenetic characteristics of three Xinjiang EV-B80 strains and one Tibet EV-B80 strain in China. The full-length genomic sequences of four strains show 78.8–79% nucleotide identity and 94–94.2% amino acid identity with the prototype of EV-B80, indicating a tendency for evolution. Based on a maximum likelihood phylogenetic tree based on the entire VP1 region, three genotypes (A–C) were defined, revealing the possible origin of EV-B80 strains in the mainland of China. Recombination analysis revealed intraspecies recombinations in all four EV-B80 strains in nonstructural regions along with two recombination patterns. Due to the geographic factor, the coevolution of EV-B strains formed two different patterns of circulation. An antibody seroprevalence study against EV-B80 in two Xinjiang prefectures also showed that EV-B80 strains were widely prevalent in Xinjiang, China, compared to other studies on EV-B106 and EV-B89. All four EV-B80 strains are not temperature sensitive, showing a higher transmissibility in the population. In summary, this study reports the full-length genomic sequences of EV-B80 and provides valuable information on global EV-B80 molecular epidemiology.