cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Arrenurus (Arrenurus) leuckarti Piersig 1894
Creators: name: Pešić, Vladimir
name: Zawal, Andrzej
name: Ferreira, Sónia
name: Benitez-Bosco, Laura
name: Cruz-Oliveira, Ana
name: Girão, Dinis
name: Padilha, Adriana
name: Turaccio, Paolo
name: Rossini, Samantha
name: Ballini, Lorenzo
name: Staffoni, Giorgia
name: Fratini, Sara
name: Ciofi, Claudio
name: Iannucci, Alessio
name: Ekrem, Torbjørn
name: Stur, Elisabeth
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Momoniidae
Arrenurus
Arrenurus leuckarti

description: Arrenurus (Arrenurus) leuckarti Piersig, 1894
Material examined.
Portugal, Guarda: • Manteigas, Poço do Inferno, 40.373°N, 7.516°W, 1078 m a.s.l., 21 Aug. 2023, leg. Ferreira, Benitez-Bosco & Padilha, 1 ♂ (sequenced); Manteigas, Casa do Cantoneiro, 40.418°N, 7.603°W, 1378 m a.s.l., 24 Aug. 2023, leg. Ferreira, Benitez-Bosco & Padilha, 1 ♀ (sequenced).
Remarks.
The examined specimens from Portugal cluster within BOLD: ACR 9670, which includes specimens of Arrenurus leuckarti from the Netherlands.
Distribution.
Western, eastern, and central Europe. New record for Portugal.
description: Published as part of Pešić, Vladimir, Zawal, Andrzej, Ferreira, Sónia, Benitez-Bosco, Laura, Cruz-Oliveira, Ana, Girão, Dinis, Padilha, Adriana, Turaccio, Paolo, Rossini, Samantha, Ballini, Lorenzo, Staffoni, Giorgia, Fratini, Sara, Ciofi, Claudio, Iannucci, Alessio, Ekrem, Torbjørn & Stur, Elisabeth, 2024, DNA barcode library of Portuguese water mites, with the descriptions of two new species (Acari, Hydrachnidia), pp. 119-171 in ZooKeys 1217 on pages 119-171, DOI: 10.3897/zookeys.1217.131730
Additional file 6: of Genome-wide association study identifies a major gene for beech bark disease resistance in American beech (Fagus grandifolia Ehrh.)
Creators: name: Ćalić, Irina
name: Koch, Jennifer
name: Carey, David
name: Addo-Quaye, Charles
name: Carlson, John
name: Neale, David
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Hematology
subject: Virology

description: (A) DAPC analysis revealed three main genetic clusters where the individuals shown as dots and the groups as inertia ellipses. Eigenvalues of the analyses are displayed inset. (B) Quantile-quantile (QQ) plot of GWA p-values where on x-axis, are expected –log10 P values and on y-axis observed –log10 P values. The plot is showing large deviation from the null distribution where the inflation factor was higher than the threshold of 1, indicating a high genomic inflation in Beech association data and an existence of the population stratification. (PDF 90 kb)
Additional file 3: of Community-based initiatives improving critical health literacy: a systematic review and meta-synthesis of qualitative evidence
Creators: name: Wit, Liesbeth De
name: Fenenga, Christine
name: Giammarchi, Cinzia
name: Furia, Lucia Di
name: Hutter, Inge
name: Winter, Andrea De
name: Meijering, Louise
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Cancer
subject: Science Policy

description: Quality assessment form used in this systematic review, based on CASP (2013) and Viswanathan et al. [21, 22]. (DOCX 18 kb)
Arrenurus (Arrenurus) neumani Piersig 1895
Creators: name: Pešić, Vladimir
name: Zawal, Andrzej
name: Ferreira, Sónia
name: Benitez-Bosco, Laura
name: Cruz-Oliveira, Ana
name: Girão, Dinis
name: Padilha, Adriana
name: Turaccio, Paolo
name: Rossini, Samantha
name: Ballini, Lorenzo
name: Staffoni, Giorgia
name: Fratini, Sara
name: Ciofi, Claudio
name: Iannucci, Alessio
name: Ekrem, Torbjørn
name: Stur, Elisabeth
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Momoniidae
Arrenurus
Arrenurus neumani

description: Arrenurus (Arrenurus) neumani Piersig, 1895
Material examined.
Portugal. Beja • Mértola, Moinho de Alferes 1, 37.502°N, 7.69°W, 19 May 2023, leg. Ferreira, Benitez-Bosco, Ekrem, Stur & Turaccio, 3 ♂, 1 ♀ (sequenced).
Remarks.
The sequenced specimens from Portugal form a unique BIN (BOLD: AFP 6143) with the nearest neighboring BIN being BOLD: ACR 9801, which includes specimens of A. neumani, from the Netherlands, Norway and Poland in BOLD. The p - distance between these two BINs was estimated at 5.9 %.
Distribution.
Palaearctic. New record for Portugal.
description: Published as part of Pešić, Vladimir, Zawal, Andrzej, Ferreira, Sónia, Benitez-Bosco, Laura, Cruz-Oliveira, Ana, Girão, Dinis, Padilha, Adriana, Turaccio, Paolo, Rossini, Samantha, Ballini, Lorenzo, Staffoni, Giorgia, Fratini, Sara, Ciofi, Claudio, Iannucci, Alessio, Ekrem, Torbjørn & Stur, Elisabeth, 2024, DNA barcode library of Portuguese water mites, with the descriptions of two new species (Acari, Hydrachnidia), pp. 119-171 in ZooKeys 1217 on pages 119-171, DOI: 10.3897/zookeys.1217.131730
MOESM5 of Splicing arrays reveal novel RBM10 targets, including SMN2 pre-mRNA
Creators: name: Sutherland, Leslie
name: Thibault, Philippe
name: Durand, Mathieu
name: Lapointe, Elvy
name: Knee, Jose
name: Beauvais, Ariane
name: Kalatskaya, Irina
name: Hunt, Sarah
name: Loiselle, Julie
name: Roy, Justin
name: Tessier, Sarah
name: Ybazeta, Gustavo
name: Stein, Lincoln
name: Kothary, Rashmi
name: Klinck, Roscoe
name: Benoit Chabot
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 5: Table S2. Array-191: List of genes with changes, by cell line.
Ballistic conductance with and without disorder in a boundary-driven XXZ spin chain
Creators: name: McRoberts, Adam J.
name: Moessner, Roderich
Publisher: name: arXiv
Year: 2024
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Motivated by recent experiments on Google's sycamore NISQ platform on the spin transport resulting from a non-unitary periodic boundary drive of an XXZ chain, we study a classical variant thereof by a combination of analytical and numerical means. We find the classical model reproduces the quantum results in remarkable detail, and provides an analytical handle on the nature and shape of the spin transport's three distinct regimes: ballistic (easy-plane), subdiffusive (isotropic) and insulating (easy-axis). Further, we show that this phenomenology is remarkably robust to the inclusion of bond disorder -- albeit that the transient dynamics approaching the steady states differs qualitatively between the clean and disordered cases -- providing an accessible instance of ballistic transport in a disordered setting.
description: 14 pages, 10 figures
Platygaster mutica Nees 1834, stat. rev.
Creators: name: Awad, Jessica
name: Krogmann, Lars
name: Talamas, Elijah
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Platygastridae
Platygaster
Platygaster mutica

description: Platygaster mutica Nees, 1834 stat. rev., nomen dubium
Platygaster muticus Nees, 1834: 308, 309.
Synopeas muticus (Nees, 1834) – Thomson 1859: 74.
Material examined
Lectotype
[GERMANY] • 1 specimen; [Nees von Esenbeck leg.]; OXUM.
Other material (not congeneric)
[GERMANY] • 1 specimen; original exemplar; NHMW NHMW-HYM#0005315.
description: Published as part of Awad, Jessica, Krogmann, Lars & Talamas, Elijah, 2023, Taxonomic history and review of the Förster genera of Platygastridae (Hymenoptera: Platygastroidea), pp. 1-46 in European Journal of Taxonomy 875 (1) on page 36, DOI: 10.5852/ejt.2023.875.2137, http://zenodo.org/record/8047251
title: Update of Atlas of Major Texas Oil Reservoirs Data Base and Atlas of Major Texas Gas Reservoirs Data Base
Creators: name: Holtz, Mark H.
name: Garrett, C. M.
name: Tremblay, Thomas A.
Publisher: name: The University of Texas at Austin
Year: 1993
Subjects: subject: reservoirs
subject: database
subject: Texas

description: Updating both the "Atlas of Major Texas Oil Reservoirs: Database" (Holtz and others, 1991) and the "Atlas of Major Texas Gas Reservoirs: Database" (Garrett and others, 1991) centered on updating cumulative production data current to December 31, 1992, for reservoirs already in the database and adding new significant-sized reservoirs (cumulative production greater than 1 million barrels of oil equivalent) to the databases. Addition of new reservoirs to the database resulted in the modification of existing plays or the determination of new plays. Play boundaries were also modified to accommodate the additional reservoirs. Oil and gas production data used for the cumulative production update and the determination of significant-sized reservoirs were obtained from Dwight's Energy data. For reservoirs already included in the Atlas databases, annual production values were added to the cumulative production already determined by the Bureau of Economic Geology (BEG) or reported by the Railroad Commission of Texas. For new reservoirs, the cumulative production values reported by Dwight's Energy data were applied. Oil reservoirs originally listed in both databases because of large gas production were combined and now are listed only in the updated Oil Atlas database.
title: Rock-Fabric Petrophysical Analysis of Core and Wireline-Log Data Haradh 101 and Haradh 106 Ghawar Field, Saudi Arabia
Creators: name: Lucia, F. Jerry
name: Rahnis, Michael A.
Publisher: name: The University of Texas at Austin
Year: 1998
Subjects: subject: Rock-fabric analysis
subject: petrophysics
subject: core analysis
subject: wireline logs
subject: Ghawar Field
subject: Saudi Arabia

description: Analysis of thin sections and core data demonstrates that rock fabrics can be grouped into petrophysical fields defined by porosity and permeability. Grainstones and large crystal dolostones fall within the petrophysical class 1 field of Lucia (1995). Permeability increases with increasing dolomite crystal size. The class 1 field is enlarged slightly to include large crystal dolostones with crystal sizes ranging up to 300 microns. Grain-dominated and dolomitic mud-dominated fabrics containing more than 25 percent dolomite fall into the petrophysical class 2 field. The dolomitic mud-dominated fabrics plot in the class 2 field because progressive dolomitization increases pore size by increasing porosity in the intercrystal mud and by creating intercrystal pore space. Mud-dominated fabrics having less than 25 percent dolomite are mostly dense but, when permeable, plot in the petrophysical class 3 field. A global relationship between rock-fabric petrophysical class, interparticle porosity, and permeability that does not require fabrics being divided into specific petrophysical classes has been developed and is used in this analysis. Permeability can be estimated from wireline logs according to the rock-fabric method. Interparticle porosity is estimated by subtracting total porosity from separate-vug porosity, which, in turn, is estimated from transit-time-porosity cross plots. Petrophysical classes can be identified from a cross plot of water saturation and porosity. The wells are far enough above the free-water level that reservoir height is not an important consideration. We identified boundaries between rock-fabric classes and multiple-regression analysis, using equations of the boundary lines, resulted in a relationship between petrophysical class, saturation, and porosity. Permeability is calculated by substituting log-calculated interparticle porosity and log-calculated petrophysical class into the global transform equation. These calculations compare well with core data and retain high and low permeability values.
Arrenurus (Arrenurus) tricuspidator
Creators: name: Pešić, Vladimir
name: Zawal, Andrzej
name: Ferreira, Sónia
name: Benitez-Bosco, Laura
name: Cruz-Oliveira, Ana
name: Girão, Dinis
name: Padilha, Adriana
name: Turaccio, Paolo
name: Rossini, Samantha
name: Ballini, Lorenzo
name: Staffoni, Giorgia
name: Fratini, Sara
name: Ciofi, Claudio
name: Iannucci, Alessio
name: Ekrem, Torbjørn
name: Stur, Elisabeth
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Momoniidae
Arrenurus
Arrenurus tricuspidator

description: Arrenurus (Arrenurus) cf. tricuspidator (Müller, 1776)
Material examined.
Portugal, Beja • Mértola, Moinho de Alferes 1, 37.502°N, 7.69°W, 19 May 2023, leg. Ferreira, Benitez-Bosco, Ekrem, Stur & Turaccio, 1 deutonymph (sequenced).
Remarks.
One deutonymph from Portugal, used in this study for molecular analysis, forms a unique cluster BOLD: AFU 3639, with a p - distance estimated at 3.21 % to the closest neigbouring BIN, BOLD: ACS 0825, which includes specimens of A. tricuspidator from the Netherlands, Norway, and Germany.
Distribution.
Palaearctic. New record for Portugal.
description: Published as part of Pešić, Vladimir, Zawal, Andrzej, Ferreira, Sónia, Benitez-Bosco, Laura, Cruz-Oliveira, Ana, Girão, Dinis, Padilha, Adriana, Turaccio, Paolo, Rossini, Samantha, Ballini, Lorenzo, Staffoni, Giorgia, Fratini, Sara, Ciofi, Claudio, Iannucci, Alessio, Ekrem, Torbjørn & Stur, Elisabeth, 2024, DNA barcode library of Portuguese water mites, with the descriptions of two new species (Acari, Hydrachnidia), pp. 119-171 in ZooKeys 1217 on pages 119-171, DOI: 10.3897/zookeys.1217.131730
Synopeas inerme Thomson 1859
Creators: name: Awad, Jessica
name: Krogmann, Lars
name: Talamas, Elijah
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Platygastridae
Synopeas
Synopeas inerme

description: Synopeas inerme Thomson, 1859
Fig. 20
Synopeas inermis Thomson, 1859: 74.
Material examined
Lectotype
[SWEDEN] • 1 ♀; MZLU MZLU TYPE 2854:1-2.
description: Published as part of Awad, Jessica, Krogmann, Lars & Talamas, Elijah, 2023, Taxonomic history and review of the Förster genera of Platygastridae (Hymenoptera: Platygastroidea), pp. 1-46 in European Journal of Taxonomy 875 (1) on page 36, DOI: 10.5852/ejt.2023.875.2137, http://zenodo.org/record/8047251
MOESM6 of Splicing arrays reveal novel RBM10 targets, including SMN2 pre-mRNA
Creators: name: Sutherland, Leslie
name: Thibault, Philippe
name: Durand, Mathieu
name: Lapointe, Elvy
name: Knee, Jose
name: Beauvais, Ariane
name: Kalatskaya, Irina
name: Hunt, Sarah
name: Loiselle, Julie
name: Roy, Justin
name: Tessier, Sarah
name: Ybazeta, Gustavo
name: Stein, Lincoln
name: Kothary, Rashmi
name: Klinck, Roscoe
name: Benoit Chabot
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 6: Figure S1. Verification of splicing changes in a stable MCF-7 RBM10 KD.
Cluster Sliding Ferroelectricity in Trilayer Quasi-Hexagonal C$_{60}$
Creators: name: Wang, Xuefei
name: Ren, Yanhan
name: Qiu, Shi
name: Zhang, Fan
name: Li, Xueao
name: Gao, Junfeng
name: Gao, Weiwei
name: Zhao, Jijun
Publisher: name: arXiv
Year: 2024
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: Electric polarization typically originates from non-centrosymmetric charge distributions in compounds. In elemental crystalline materials, chemical bonds between atoms of the same element favor symmetrically distributed electron charges and centrosymmetric structures, making elemental ferroelectrics rare. Compared to atoms, elemental clusters are intrinsically less symmetric and can have various preferred orientations when they are assembled to form crystals. Consequently, the assembly of clusters with different orientations tends to break the inversion symmetry. By exploiting this concept, we show that sliding ferroelectricity naturally emerges in trilayer quasi-hexagonal phase (qHP) C$_{60}$, a cluster-assembled carbon allotrope recently synthesized. Compared to many metallic or semi-metallic elemental ferroelectrics, trilayer qHP C$_{60}$'s have sizable band gaps and several ferroelectric structures, which are distinguishable by measuring their second-harmonic generation (SHG) responses. Some of these phases show both switchable out-of-plane and in-plane polarizations on the order of 0.2 pC/m. The out-of-plane and in-plane polarizations can be switched independently and enable an easy-to-implement construction of Van der Waals homostructures with ferroelectrically switchable chirality.
description: 5 figures
title: Shoreline Types of the Central Texas Coast: Matagorda to Corpus Christi Areas
Creators: name: Morton, Robert A.
name: White, William Allen, 1939-
Publisher: name: The University of Texas at Austin
Year: 1998
Subjects: subject: Shoreline types
subject: central Texas coast
subject: Matagorda
subject: Corpus Christi
subject: geomorphology

description: The report details how the Bureau of Economic Geology (BEG) classified and mapped the shores of the central Texas coast, offering definitions of each shoreline type and providing examples that demonstrate how the physical attributes of shoreline habitats influence the impact of spilled oil. This information is crucial for the creation of Environmental Sensitivity Index (ESI) maps used in oil spill response and contingency planning. Shorelines were classified according to an ESI scheme established by Research Planning, Inc. (RPI) and the BEG, with rankings ranging from 1 to 10. Examples of each shoreline type are provided, along with explanations of common occurrences of multiple adjacent shoreline types. Mapping of shoreline types was conducted on U.S.G.S. topographic quadrangles (1:24,000) using recent vertical aerial photographs, low-altitude color video surveys from 1997, oblique color slides from 1992, and previous field experience. Ground spot checks were performed in May 1998 to verify the accuracy of the maps. The Matagorda to Corpus Christi region was chosen for the second phase of ESI mapping in Texas due to its diverse shoreline types, dense industrialization, environmentally sensitive wetlands, and significant volume of oil transportation through major shipping channels and the Intracoastal Waterway in the region.
Arrenurus (Megaluracarus) globator
Creators: name: Pešić, Vladimir
name: Zawal, Andrzej
name: Ferreira, Sónia
name: Benitez-Bosco, Laura
name: Cruz-Oliveira, Ana
name: Girão, Dinis
name: Padilha, Adriana
name: Turaccio, Paolo
name: Rossini, Samantha
name: Ballini, Lorenzo
name: Staffoni, Giorgia
name: Fratini, Sara
name: Ciofi, Claudio
name: Iannucci, Alessio
name: Ekrem, Torbjørn
name: Stur, Elisabeth
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Momoniidae
Arrenurus
Arrenurus globator

description: Arrenurus (Megaluracarus) globator (Müller, 1776)
Material examined.
Portugal: Beja: • Mértola, São Sebastião dos Carros, 37.598°N, 7.754°W, 21 May 2023, leg. Ferreira, Benitez-Bosco, Ekrem, Stur & Turaccio, 2 ♂, 1 ♀ (sequenced); • Mértola, Ribeira de Carreiras, São Miguel do Pinheiro, 37.552°N, 7.85°W, 21 May 2023, leg. Ferreira, Benitez-Bosco, Ekrem, Stur & Turaccio, 1 ♂, 2 ♀ (sequenced); • Moinho de Alferes 1, 37.502°N, 7.69°W, 19 May 2023, leg. Ferreira, Benitez-Bosco, Ekrem, Stur & Turaccio, 1 ♀ (sequenced).
Remarks.
The sequenced specimens from Portugal form a unique BIN (BOLD: AFO 3503) with the nearest neighboring BIN being BOLD: ACS 0765, which includes 34 specimens from the Netherlands, Norway, Poland and North Macedonia partially assigned to A. globator or A. tubulator. The p - distance between these two BINs was estimated at 5.45 %.
Distribution.
Palaearctic. In Portugal previously reported from Alentejo (Lundblad 1956).
description: Published as part of Pešić, Vladimir, Zawal, Andrzej, Ferreira, Sónia, Benitez-Bosco, Laura, Cruz-Oliveira, Ana, Girão, Dinis, Padilha, Adriana, Turaccio, Paolo, Rossini, Samantha, Ballini, Lorenzo, Staffoni, Giorgia, Fratini, Sara, Ciofi, Claudio, Iannucci, Alessio, Ekrem, Torbjørn & Stur, Elisabeth, 2024, DNA barcode library of Portuguese water mites, with the descriptions of two new species (Acari, Hydrachnidia), pp. 119-171 in ZooKeys 1217 on pages 119-171, DOI: 10.3897/zookeys.1217.131730
Additional file 2: of Birth weight differences between those offered financial voucher incentives for verified smoking cessation and control participants enrolled in the Cessation in Pregnancy Incentives Trial (CPIT), employing an intuitive approach and a Complier Average Causal Effects (CACE) analysis
Creators: name: McConnachie, Alex
name: Haig, Caroline
name: Sinclair, Lesley
name: Bauld, Linda
name: Tappin, David
Publisher: name: Figshare
Year: 2017
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: Computational Biology

description: Consort checklist submitted with the manuscript for the CPIT II [11]. (DOC 219 kb)
Additional file 1: of ReaDySpeech for people with dysarthria after stroke: protocol for a feasibility randomised controlled trial
Creators: name: Mitchell, Claire
name: Bowen, Audrey
name: Tyson, Sarah
name: Conroy, Paul
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Description of ReaDySpeech and usual care (TIDieR). (DOCX 18Â kb)
MOESM6 of Splicing arrays reveal novel RBM10 targets, including SMN2 pre-mRNA
Creators: name: Sutherland, Leslie
name: Thibault, Philippe
name: Durand, Mathieu
name: Lapointe, Elvy
name: Knee, Jose
name: Beauvais, Ariane
name: Kalatskaya, Irina
name: Hunt, Sarah
name: Loiselle, Julie
name: Roy, Justin
name: Tessier, Sarah
name: Ybazeta, Gustavo
name: Stein, Lincoln
name: Kothary, Rashmi
name: Klinck, Roscoe
name: Benoit Chabot
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 6: Figure S1. Verification of splicing changes in a stable MCF-7 RBM10 KD.
Synopeas melampus Forster 1861
Creators: name: Awad, Jessica
name: Krogmann, Lars
name: Talamas, Elijah
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Platygastridae
Synopeas
Synopeas melampus

description: Synopeas melampus Förster 1861
Synopeas melampus Förster, 1861: 41.
Leptacis melampus (Förster, 1861) – Vlug 1973: 177.
Synopeas melampus Förster, 1861 – Buhl 1997: 22, 23, figs 5–8.
Material examined
Lectotype
SWITZERLAND • 1 ♀; Rosegg-Thal [Roseg Valley]; [Jul. 1861]; [A. Förster leg.]; NHMW NHMW-HYM#0005305.
description: Published as part of Awad, Jessica, Krogmann, Lars & Talamas, Elijah, 2023, Taxonomic history and review of the Förster genera of Platygastridae (Hymenoptera: Platygastroidea), pp. 1-46 in European Journal of Taxonomy 875 (1) on page 36, DOI: 10.5852/ejt.2023.875.2137, http://zenodo.org/record/8047251
Arrenurus (Megaluracarus) zachariae Koenike 1886
Creators: name: Pešić, Vladimir
name: Zawal, Andrzej
name: Ferreira, Sónia
name: Benitez-Bosco, Laura
name: Cruz-Oliveira, Ana
name: Girão, Dinis
name: Padilha, Adriana
name: Turaccio, Paolo
name: Rossini, Samantha
name: Ballini, Lorenzo
name: Staffoni, Giorgia
name: Fratini, Sara
name: Ciofi, Claudio
name: Iannucci, Alessio
name: Ekrem, Torbjørn
name: Stur, Elisabeth
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Momoniidae
Arrenurus
Arrenurus zachariae

description: Arrenurus (Megaluracarus) cf. zachariae Koenike, 1886
Material examined.
Portugal, Bragança • Vinhais, Gasparona, 41.85°N, 7.013°W, 693 m a.s.l., 6 Jul. 2023, leg. Ferreira & Padilha, 1 deutonymph (sequenced).
Remarks.
One deutonymph from Portugal forms a unique cluster BOLD: AFU 0319, with a p - distance to the closest neighboring BIN, BOLD: ADF 7386, which includes mostly specimens assigned to A. zachariae, estimated at 2.56 %.
Distribution.
Europe. New record for Portugal.
description: Published as part of Pešić, Vladimir, Zawal, Andrzej, Ferreira, Sónia, Benitez-Bosco, Laura, Cruz-Oliveira, Ana, Girão, Dinis, Padilha, Adriana, Turaccio, Paolo, Rossini, Samantha, Ballini, Lorenzo, Staffoni, Giorgia, Fratini, Sara, Ciofi, Claudio, Iannucci, Alessio, Ekrem, Torbjørn & Stur, Elisabeth, 2024, DNA barcode library of Portuguese water mites, with the descriptions of two new species (Acari, Hydrachnidia), pp. 119-171 in ZooKeys 1217 on pages 119-171, DOI: 10.3897/zookeys.1217.131730
Synopeas prospectum Forster 1861
Creators: name: Awad, Jessica
name: Krogmann, Lars
name: Talamas, Elijah
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Platygastridae
Synopeas
Synopeas prospectum

description: Synopeas prospectum Förster, 1861
Fig. 21
Synopeas prospectus Förster, 1861: 41.
Material examined
Lectotype
SWITZERLAND • 1 ♀; Rosegg-Thal [Roseg Valley]; [Jul. 1861]; [A. Förster leg.]; NHMW NHMW-HYM#0005306.
Other material
ITALY • 1 ♀; Monte Argentario, “ Plateau Westl. Telegraphenstat. ”; alt. 600 m.; Moczarski-Scherpeltz leg.; NHMW NHMW-HYM#0005307.
description: Published as part of Awad, Jessica, Krogmann, Lars & Talamas, Elijah, 2023, Taxonomic history and review of the Förster genera of Platygastridae (Hymenoptera: Platygastroidea), pp. 1-46 in European Journal of Taxonomy 875 (1) on pages 36-37, DOI: 10.5852/ejt.2023.875.2137, http://zenodo.org/record/8047251
Additional file 8: of Genome-wide association study identifies a major gene for beech bark disease resistance in American beech (Fagus grandifolia Ehrh.)
Creators: name: Ćalić, Irina
name: Koch, Jennifer
name: Carey, David
name: Addo-Quaye, Charles
name: Carlson, John
name: Neale, David
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: (A) Four highlighted markers with significance level higher than genome-wide threshold (P value >1.585 × 10–5) located on the chromosome (Chr) 5. (B) Alignment of four nucleotide sequences to reference sequence Fagus sylvatica mRNA (Sequence ID: AJ130886.1). The FASTA sequence order corresponds as AX-156994126 (SEQ_1), AX-156989406 (SEQ_2), AX-156988334 (SEQ_3) and AX-157000652 (SEQ_4). Highlighted red nucleotides refer to polymorphism to reference sequence and green nucleotides present diagnostics SNPs, respectively. (DOCX 4155 kb)
Simpsonichthys (Spectrolebias)
Creators: name: Wilson J. E. M. Costa
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Cyprinodontiformes
Rivulidae
Simpsonichthys
Simpsonichthys chacoensis

description: Subgenus Spectrolebias Costa & Nielsen, 1997
Spectrolebias Costa & Nielsen, 1997: 258 (type species Spectrolebias semiocellatus Costa & Nielsen, by original designation; first proposed as a genus).
Diagnosis
Distinguished from all other cynolebiatins by two unambiguous synapomorphies (Costa, 2006a): a long (vs. short) hyomandibula and a narrowed (vs. wide) proximal tip of the fourth ceratobranchial.
Included species
Simpsonichthys chacoensis (Amato), S. semiocellatus (Costa & Nielsen), S. filamentosus Costa, Barrera & Sarmiento, S. costai (Lazara), and S. reticulatus Costa & Nielsen.
Distribution
Southern Amazonian river drainages, including rio Madeira, Xingu, Araguaia and Tocantins, and Paraguayan Chaco, río Paraguay basin (Figs. 1 and 4).
Key to species of the subgenus Spectrolebias
1a. Dorsal fin rounded in males; dark suborbital and postorbital bars........................................................2
1b. Dorsal fin pointed in males; no bars on head........................................................................................3
2a(1a). Dorsal-fin rays 23-25 in males, 13-15 in females; flank greenish blue with dark red crimson scale margins in males................................................................................................................. S. reticulatus
2b(1a). Dorsal-fin rays 21-23 in males, 16-19 in females; flank dark brown to black with light blue dots in males.......................................................................................................................................... S. costai
3a(1b). Anal-fin rays 23-25 in males; flanks light orange to translucent, unpaired fins pale red in males........................................4
3b(1b). Anal-fin rays 26-28 in males; flanks and unpaired fins dark bluish gray in males............................... S. chacoensis
4a(3a). Frontal squamation E-patterned; anal fin pointed and with long filaments in males; no black spot on anal fin in males.............................................................................................................. S. filamentosus
4b(3a). Frontal squamation F-patterned; anal fin rounded and without filaments in males; black and blue spot on posterior portion of distal edge of anal fin in males................................................. S. semiocellatus
description: Published as part of Wilson J. E. M. Costa, 2007, Taxonomic revision of the seasonal South American killifish genus Simpsonichthys (Teleostei: Cyprinodontiformes: Aplocheiloidei: Rivulidae)., pp. 1-134 in Zootaxa 1669 on page 42
title: Sediment Budget Analysis for Laguna Madre, Texas: An Examination of Sediment Characteristics, History and Recent Transport
Creators: name: Morton, Robert A.
name: White, William Allen, 1939-
name: Nava, Robin C.
Publisher: name: The University of Texas at Austin
Year: 1998
Subjects: subject: Sediment budget
subject: Laguna Madre
subject: Texas
subject: sediment transport
subject: coastal processes

description: This study aimed to enhance the understanding of sediment fluxes in Laguna Madre and the primary processes responsible for the introduction and redistribution of sediments within and around the lagoon. Additional objectives included quantifying the long-term average annual sediment budget of the lagoon and comparing natural sediment fluxes from various sources (such as eolian transport, storm washover, upland runoff, tidal exchange, shore erosion, and authigenic mineral production) with fluxes related to dredging and disposal activities associated with the Gulf Intracoastal Waterway (GIWW) for channel maintenance. Long-term analysis of sediment transport mechanisms and associated fluxes provided insights into the potential impact of reworked dredged material on the distribution of seagrasses in the lagoon. The study revealed that, on average, the volume of new sediment introduced into Laguna Madre is significantly less than the volume dredged from the GIWW. Moreover, the average sedimentation rate within the lagoon is lower than the rate of relative sea-level rise. This suggests that instead of filling up, the lagoon is slowly migrating westward, as evidenced by erosion along its western shore. Comparison of cumulative volumes of dredged sediment from different segments of the GIWW in both northern and southern Laguna Madre with sediment volumes remaining in placement areas indicates that shoaling of the GIWW is primarily caused by the reworking of dredged material. This reworking process is influenced by water depth and location relative to predominant wind-driven currents. Areas with infrequent flooding or extremely shallow water experience minimal reworking, while dredged material in deeper-water placement areas is often reworked and redistributed back into the GIWW or surrounding areas of the lagoon.
Gorgorhynchus
Creators: name: Muniz-Pereira, Luís C.
name: Vieira, Fabiano M.
name: Luque, José L.
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Acanthocephala
Palaeacanthocephala
Echinorhynchida
Rhadinorhynchidae
Gorgorhynchus

description: Gorgorhynchus sp.
Dipturus trachydermus (Krefft & Stehmann), unspecified site of infection, unspecified locality (Santos et al. 2008).
description: Published as part of Muniz-Pereira, Luís C., Vieira, Fabiano M. & Luque, José L., 2009, Checklist of helminth parasites of threatened vertebrate species from Brazil, pp. 1-45 in Zootaxa 2123 on page 3, DOI: 10.5281/zenodo.188170
Synopeas rigidicornis Forster 1861
Creators: name: Awad, Jessica
name: Krogmann, Lars
name: Talamas, Elijah
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Platygastridae
Synopeas
Synopeas rigidicornis

description: Synopeas rigidicornis Förster, 1861
Synopeas rigidicornis Förster, 1861: 41.
Leptacis rigidicornis (Förster, 1861) – Vlug 1973: 177.
Synopeas rigidicornis Förster, 1861 – Buhl 1997: 24, 25, figs 9–12.
Material examined
Holotype
SWITZERLAND • ♂; Rosegg-Thal [Roseg Valley]; [Jul. 1861]; [A. Förster leg.]; NHMW NHMW-HYM#0005302.
description: Published as part of Awad, Jessica, Krogmann, Lars & Talamas, Elijah, 2023, Taxonomic history and review of the Förster genera of Platygastridae (Hymenoptera: Platygastroidea), pp. 1-46 in European Journal of Taxonomy 875 (1) on pages 37-38, DOI: 10.5852/ejt.2023.875.2137, http://zenodo.org/record/8047251
title: Estimation of Gas Permeabilities for the Maricopa Site, Arizona
Creators: name: Scanlon, Bridget R.
name: Angle, Edward S.
name: Liang, Jinhuo
Publisher: name: The University of Texas at Austin
Year: 1998
Subjects: subject: Gas permeability
subject: Maricopa
subject: Arizona
subject: reservoir characterization

description: Upward and downward migration of gases from waste-disposal facilities is a critical issue for low-level radioactive waste disposal. Gaseous radionuclides in low-level waste include H-3, C-14, and Rn-222. Upward migration of gases to the surface can be important, particularly during operation of the facility (Kozak and Olague, 1994). High tritium values (for example 1,100 TU at 24 m depth, 162 TU at 109 m depth) have been found adjacent to the Beatty site, Nevada, that cannot readily be explained by liquid or combined liquid and vapor transport (Prudic and Striegl, 1995; Striegl et al., 1996). Because disposal practices at Beatty varied in the past and included disposal of as much as 2,000 m3 of liquid waste, further research in tritium movement at Beatty is warranted. Transport mechanisms for gases include not only diffusion but also advection. Analysis of gas transport is important at many low-level waste disposal facilities as shown by the intensive program to monitor concentrations and concentration gradients of gaseous radionuclides proposed for the California low-level radioactive waste disposal facility (Harding Lawson & Assoc., 1991). Performance assessment calculations require information on parameters related to gas transport to predict long-term migration of gases in the subsurface. The purpose of this study is to evaluate different techniques of estimating gas transport parameters and monitoring subsurface gas migration. The objective of this study is to examine different techniques for evaluating gas permeability. Pneumatic pressure tests will be conducted to estimate vertical and horizontal air permeabilities at different levels. In addition, permeabilities will be calculated from atmospheric breathing data that will include evaluation of subsurface response to barometric pressure fluctuations. Computer simulations suggest that air from the surface can move several meters into the ground during typical barometric pressure cycles (Massmann and Farrier, 1992). Gas ports will be installed at different depths in two boreholes to evaluate atmospheric pumping. The results of this study will provide valuable information on subsurface gas transport processes and the various techniques to obtain data on parameters required for simulation of such processes. These data will be required for performance assessment calculations.
title: Determination of Texas Oil Fields Eligible for Variance from Area-of-Review Requirements in Underground Injection Control Regulations for Class II Injection Wells
Creators: name: Smyth, Rebecca C.
name: Elliott, Benjamin P.
name: Nava, Robin C.
Publisher: name: The University of Texas at Austin
Year: 1998
Subjects: subject: Underground injection control
subject: Class II injection wells
subject: area-of-review variance
subject: Texas oil fields
subject: environmental regulations

description: Permitting of salt-water injection wells requires oil companies or operators to perform an Area of Review (AOR) study within a 0.25-mile radius of a proposed well. The purpose of an AOR study is to identify unplugged wells that may allow injected fluids to migrate upward from the production zone and endanger the overlying underground sources of drinking water (USDW). The Bureau of Economic Geology (BEG) at the University of Texas at Austin, in conjunction with the Railroad Commission of Texas (RRC), evaluated oil fields in Texas for possible variance to the AOR permitting process based on the separation between production-zone fluid levels and the base of USDW. The purpose was for RRC and the industry to use these data and methodology in AOR variance applications and the review of Texas oil fields.
Additional file 1: of Supporting and retaining Village Health Teams: an assessment of a community health worker program in two Ugandan districts
Creators: name: Mays, Daniel
name: OâNeil, Edward
name: Mworozi, Edison
name: Lough, Benjamin
name: Tabb, Zachary
name: Whitlock, Ashlyn
name: Mutimba, Edward
name: Zohray Talib
Publisher: name: Figshare
Year: 2017
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy
subject: Computational Biology

description: VHT Survey. (PDF 724 kb)
Additional file 8: of Genome-wide association study identifies a major gene for beech bark disease resistance in American beech (Fagus grandifolia Ehrh.)
Creators: name: Ćalić, Irina
name: Koch, Jennifer
name: Carey, David
name: Addo-Quaye, Charles
name: Carlson, John
name: Neale, David
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: (A) Four highlighted markers with significance level higher than genome-wide threshold (P value >1.585 × 10–﻿﻿5﻿) located on the chromosome (Chr) 5. (B) Alignment of four nucleotide sequences to reference sequence Fagus sylvatica mRNA (Sequence ID: AJ130886.1). The FASTA sequence order corresponds as AX-156994126 (SEQ_1), AX-156989406 (SEQ_2), AX-156988334 (SEQ_3) and AX-157000652 (SEQ_4). Highlighted red nucleotides refer to polymorphism to reference sequence and green nucleotides present diagnostics SNPs, respectively. (DOCX 4155 kb)
MOESM7 of Splicing arrays reveal novel RBM10 targets, including SMN2 pre-mRNA
Creators: name: Sutherland, Leslie
name: Thibault, Philippe
name: Durand, Mathieu
name: Lapointe, Elvy
name: Knee, Jose
name: Beauvais, Ariane
name: Kalatskaya, Irina
name: Hunt, Sarah
name: Loiselle, Julie
name: Roy, Justin
name: Tessier, Sarah
name: Ybazeta, Gustavo
name: Stein, Lincoln
name: Kothary, Rashmi
name: Klinck, Roscoe
name: Benoit Chabot
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Marine Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 7: Table S3. List of changes that occurred in cell lines common to both Array-96 and Arrar-191, and the GeneCard database designation used for pathway analysis.
Bolbosoma turbinella Diesing
Creators: name: Muniz-Pereira, Luís C.
name: Vieira, Fabiano M.
name: Luque, José L.
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Acanthocephala
Palaeacanthocephala
Polymorphida
Polymorphidae
Bolbosoma
Bolbosoma turbinella

description: Bolbosoma turbinella (Diesing)
Pontoporia blainvillei (Gervais & d’Orbigny), large intestine, stomach, Rio Grande do Sul (Silva & Cousin 2004, 2006a).
Balaenoptera borealis Lesson, intestine, small intestine, Rio de Janeiro (Machado-Filho 1964; Muniz-Pereira et al. 1999, Pinto et al. 2004) (CHIOC 29626, 29639, 29640, 29836, 29751̅29831).
description: Published as part of Muniz-Pereira, Luís C., Vieira, Fabiano M. & Luque, José L., 2009, Checklist of helminth parasites of threatened vertebrate species from Brazil, pp. 1-45 in Zootaxa 2123 on page 3, DOI: 10.5281/zenodo.188170
Trichacis Forster 1856
Creators: name: Awad, Jessica
name: Krogmann, Lars
name: Talamas, Elijah
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Platygastridae
Trichacis

description: Genus Trichacis Förster, 1856
Figs 22–23
Trichacis Förster, 1856: 108, 115. Type species Trichacis pisis (Walker, 1835) by subsequent designation by Ashmead 1893: 294.
Trichasis Förster, 1856 – Thomson 1859: 78. — Vlug 1995: 84 (misspelling).
Remarks
Trichacis is characterized by a tuft of setae on the mesoscutellum and a round or ovoid head (as opposed to the blocky head of Isocybus). Species of Trichacis typically have a smooth or finely sculptured frons with transverse striation or rugulae above the toruli. Upon its description, Förster included T. didas (Walker, 1835), T. pisis (Walker, 1835), and T. remulus (Walker, 1835). Trichacis pisis was designated as the type species by Ashmead (1983). The NHMW includes one female original exemplar of T. tristis, a species for which there is no known type material. We here designate this specimen (NHMW-HYM#0005319) as the neotype of Platygaster tristis Nees, 1834.
description: Published as part of Awad, Jessica, Krogmann, Lars & Talamas, Elijah, 2023, Taxonomic history and review of the Förster genera of Platygastridae (Hymenoptera: Platygastroidea), pp. 1-46 in European Journal of Taxonomy 875 (1) on page 38, DOI: 10.5852/ejt.2023.875.2137, http://zenodo.org/record/8047251
title: Site Investigation and Evaluation of Remedial Alternatives for the Wharton County Site, East Bernard, Texas
Creators: name: Smyth, Rebecca C.
name: Dutton, Alan R.
name: Nava, Robin C.
Publisher: name: The University of Texas at Austin
Year: 1998
Subjects: subject: Site investigation
subject: remediation
subject: Wharton County
subject: Texas
subject: environmental contamination

description: The permitting process for salt-water injection wells mandates that oil companies or operators conduct an Area of Review (AOR) study within a 0.25-mile radius of a proposed well. The objective of such a study is to identify unplugged wells that could potentially allow injected fluids to migrate upward from the production zone, posing a threat to the overlying underground sources of drinking water (USDW). The Bureau of Economic Geology (BEG) at the University of Texas at Austin, working in collaboration with the Railroad Commission of Texas (RRC), assessed oil fields across Texas to determine if any variations to the AOR permitting process were feasible based on the separation between production-zone fluid levels and the base of USDW. This evaluation aimed to provide the RRC and the industry with valuable data and methodology to facilitate AOR variance applications and the review of oil fields in Texas.
Trichacis pisis
Creators: name: Awad, Jessica
name: Krogmann, Lars
name: Talamas, Elijah
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Platygastridae
Trichacis
Trichacis pisis

description: Trichacis pisis (Walker, 1835)
Fig. 22
Platygaster pisis Walker, 1835: 239
Trichacis pisis (Walker, 1835) – Förster 1856: 115.
Material examined
Lectotype
[ENGLAND] • 1 ♂; NMINH NMINH_2018_11_24.
description: Published as part of Awad, Jessica, Krogmann, Lars & Talamas, Elijah, 2023, Taxonomic history and review of the Förster genera of Platygastridae (Hymenoptera: Platygastroidea), pp. 1-46 in European Journal of Taxonomy 875 (1) on page 38, DOI: 10.5852/ejt.2023.875.2137, http://zenodo.org/record/8047251
Excitonic Bloch equations from first principles
Creators: name: Stefanucci, Gianluca
name: Perfetto, Enrico
Publisher: name: arXiv
Year: 2024
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The ultrafast conversion of coherent excitons into incoherent excitons, as well as the subsequent exciton diffusion and thermalization, are central topics in current scientific research due to their relevance in optoelectronics, photovoltaics and photocatalysis. Current approaches to the exciton dynamics rely on {\em model} Hamiltonians that depend on already screened electron-electron and electron-phonon couplings. In this work, we subject the state-of-the-art methods to scrutiny using the {\em ab initio} Hamiltonian for electrons and phonons. We offer a rigorous and intuitive proof demonstrating that the exciton dynamics governed by model Hamiltonians is affected by an overscreening of the electron-phonon interaction. The introduction of an auxiliary exciton species, termed the irreducible exciton, enables us to formulate a theory free from overscreening and derive the excitonic Bloch equations. These equations describe the time-evolution of coherent, irreducible, and incoherent excitons during and after the optical excitation. They are applicable beyond the linear regime, and predict that the total number of excitons is preserved when the external fields are switched off.
description: 29 pages