cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 7 of Ameliorating the drought stress tolerance of a susceptible soybean cultivar, MAUS 2 through dual inoculation with selected rhizobia and AM fungus
Creators: name: Ashwin, Revanna
name: Bagyaraj, Davis Joseph
name: Mohan Raju, Basavaiah
Publisher: name: figshare
Year: 2024
Subjects: subject: Plant Biology
subject: FOS: Biological sciences

description: Additional file 7: Fig. S4. a Principal Component analysis of the PLFA biomarkers from the rhizosphere soils of soybean cultivar, MAUS 2 inoculated with Ambispora leptoticha + Bradyrhizobium liaoningense. b PLFA variables subjected to redundancy analysis by PCA. [10 PLFA biomarkers (including 2 ratios) were selected for the PCA model where axis labels indicate variables that were strong negative or positive factors on each axis (biomarker- Fungi, Gram −ve, Eukaryote contributed negatively]; UI un-inoculated, I inoculated, UIS un-inoculated stress, IS inoculated stress.
Supplemental Material - Compression versus no compression after endovenous radiofrequency ablation: A meta-analysis of randomized controlled trials
Creators: name: Zhang, Dengxiao
name: Shi, Chaohai
name: Zhang, Yuan
name: Cui, Qi
name: Zhai, Shaobo
name: Huang, Yalong
name: Zhou, Cong
name: Chen, Quan
Publisher: name: SAGE Journals
Year: 2022
Subjects: Cardiology

description: Supplemental Material for Compression versus no compression after endovenous radiofrequency ablation: A meta-analysis of randomized controlled trials by Dengxiao Zhang, Chaohai Shi, Yuan Zhang, Qi Cui, Shaobo Zhai, Yalong Huang, Cong Zhou and Quan Chen in Phlebology: The Journal of Venous Disease
Additional file 1 of Measuring provider well-being: initial validation of a brief engagement survey
Creators: name: Call, Megan
name: Qeadan, Fares
name: Tingey, Benjamin
name: Morrow, Ellen
name: Webber, David
name: Hamilton, Blake
name: Locke, Amy
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Biological Sciences not elsewhere classified
Science Policy

description: Additional file 1.
Controlled assembly of artificial 2D materials based on the transfer of oxo-functionalized graphene
Creators: name: Hußmann, Marleen
name: Weintrub, Benjamin
name: Feicht, Patrick
name: Germer, Gregor
name: Kirchhof, Jan N.
name: Bolotin, Kirill
name: Eigler, Siegfried
Publisher: name: Freie Universität Berlin
Year: 2019
Subjects: subject: artificial 2D materials
subject: oxo-functionalized graphene
subject: assembly
subject: 500 Naturwissenschaften und Mathematik::530 Physik::530 Physik

description: Functionalized 2D materials have unique properties, but are currently not used for the assembly of van der Waals heterostructures. Here, we present the controlled transfer of artificially synthesized, polar and highly transparent oxo-functionalized graphene, which can decouple graphene layers.
sj-docx-1-asm-10.1177_10731911221103309 – Supplemental material for Screening for Pregnancy-Related Anxiety: Evaluation of the Pregnancy-Related Anxiety Scale–Screener Using Rasch Methodology
Creators: name: Dryer, Rachel
name: Brunton, Robyn
name: Krägeloh, Chris
name: Medvedev, Oleg
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 160807 Sociological Methodology and Research Methods
subject: FOS: Sociology
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental material, sj-docx-1-asm-10.1177_10731911221103309 for Screening for Pregnancy-Related Anxiety: Evaluation of the Pregnancy-Related Anxiety Scale–Screener Using Rasch Methodology by Rachel Dryer, Robyn Brunton, Chris Krägeloh and Oleg Medvedev in Assessment
sj-pdf-1-wjn-10.1177_01939459221105827 – Supplemental material for Decision Delay Is a Significant Contributor to Prehospital Delay for Stroke Symptoms
Creators: name: Potisopha, Wiphawadee
name: Vuckovic, Karen M.
name: DeVon, Holli A.
name: Park, Chang G.
name: Phutthikhamin, Nichapatr
name: Hershberger, Patricia E.
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 111099 Nursing not elsewhere classified
subject: FOS: Health sciences

description: Supplemental material, sj-pdf-1-wjn-10.1177_01939459221105827 for Decision Delay Is a Significant Contributor to Prehospital Delay for Stroke Symptoms by Wiphawadee Potisopha, Karen M. Vuckovic, Holli A. DeVon, Chang G. Park, Nichapatr Phutthikhamin and Patricia E. Hershberger in Western Journal of Nursing Research
sj-pdf-1-neu-10.1177_19714009221108668 – Supplemental Material for Congenital internal carotid artery hypoplasia: A systematic review
Creators: name: Whitley, Helen
name: Zazay, Awista
name: Skalický, Petr
name: Malík, Jozef
name: Charvát, František
name: Beneš, Vladimír
name: Bradáč, Ondřej
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: Neuroscience

description: Supplemental Material, sj-pdf-1-neu-10.1177_19714009221108668 for Congenital internal carotid artery hypoplasia: A systematic review by Helen Whitley, Petr Skalický, Jozef Malík, František Charvát, Vladimír Beneš and Ondřej Bradáč in The Neuroradiology Journal
Supplemental Material - Physicochemical Changes in Bone Bioapatite During the Late Postmortem Interval Pre- and Post-Burning
Creators: name: Végh, Emese I.
name: Márquez-Grant, Nicholas
name: Schulting, Rick J.
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 99999 Engineering not elsewhere classified
subject: FOS: Other engineering and technologies

description: Supplemental Material for Physicochemical Changes in Bone Bioapatite During the Late Postmortem Interval Pre- and Post-Burning by Emese I. Végh, Nicholas Márquez-Grant, and Rick J. Schulting in Applied Spectroscopy
Experimental and simulation efforts in the astrobiological exploration of exooceans
Creators: name: Taubner, Ruth-Sophie
name: Postberg, Frank
name: Noack, Lena
name: Klenner, Fabian
name: Olsson-Francis, Karen
name: Vance, Steven D.
name: Ramkissoon, Nisha K.
name: Vera, Jean-Pierre De
name: Antunes, André
name: Casas, Eloi Camprubi
Publisher: name: Freie Universität Berlin
Year: 2020
Subjects: subject: icy worlds
subject: techniques
subject: simulations
subject: experiments
subject: 500 Naturwissenschaften und Mathematik::550 Geowissenschaften, Geologie::551 Geologie, Hydrologie, Meteorologie

description: The icy satellites of Jupiter and Saturn are perhaps the most promising places in the Solar System regarding habitability. However, the potential habitable environments are hidden underneath km-thick ice shells. The discovery of Enceladus’ plume by the Cassini mission has provided vital clues in our understanding of the processes occurring within the interior of exooceans. To interpret these data and to help configure instruments for future missions, controlled laboratory experiments and simulations are needed. This review aims to bring together studies and experimental designs from various scientific fields currently investigating the icy moons, including planetary sciences, chemistry, (micro-)biology, geology, glaciology, etc. This chapter provides an overview of successful in situ, in silico, and in vitro experiments, which explore different regions of interest on icy moons, i.e. a potential plume, surface, icy shell, water and brines, hydrothermal vents, and the rocky core.
Additional file 1 of Gender-based violence against women during the COVID-19 pandemic: recommendations for future
Creators: name: Ostadtaghizadeh, Abbas
name: Zarei, Mozhdeh
name: Saniee, Nadia
name: Rasouli, Mohammad Aziz
Publisher: name: figshare
Year: 2024
Subjects: subject: Sociology
subject: FOS: Sociology

description: Additional File: Search strategies
Sensitivity of the superconducting state in thin films
Creators: name: Tamir, I.
name: Benyamini, A.
name: Telford, E. J.
name: Gorniaczyk, F.
name: Doron, A.
name: Levinson, T.
name: Wang, D.
name: Gay, F.
name: Sacépé, B.
name: Hone, J.
Publisher: name: Freie Universität Berlin
Year: 2019
Subjects: subject: thin films
subject: superconducting state
subject: insulating phases
subject: 500 Naturwissenschaften und Mathematik::530 Physik::530 Physik

description: For more than two decades, there have been reports on an unexpected metallic state separating the established superconducting and insulating phases of thin-film superconductors. To date, no theoretical explanation has been able to fully capture the existence of such a state for the large variety of superconductors exhibiting it. Here, we show that for two very different thin-film superconductors, amorphous indium oxide and a single crystal of 2H-NbSe2, this metallic state can be eliminated by adequately filtering external radiation. Our results show that the appearance of temperature-independent, metallic-like transport at low temperatures is sufficiently described by the extreme sensitivity of these superconducting films to external perturbations. We relate this sensitivity to the theoretical observation that, in two dimensions, superconductivity is only marginally stable.
sj-pdf-1-imr-10.1177_03000605221103959 - Supplemental material for Warfarin resistance: possibilities to solve this problem. A case report
Creators: name: Mostbauer, Halyna
name: Nishkumay, Olga
name: Rokyta, Oksana
name: Vavryniuk, Valeriia
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 111708 Health and Community Services
subject: FOS: Health sciences
subject: Cardiology
subject: 110599 Dentistry not elsewhere classified
subject: FOS: Clinical medicine
subject: 110305 Emergency Medicine
subject: 110306 Endocrinology
subject: 110308 Geriatrics and Gerontology
subject: 110904 Neurology and Neuromuscular Diseases
subject: 111099 Nursing not elsewhere classified
subject: 111199 Nutrition and Dietetics not elsewhere classified
subject: 111299 Oncology and Carcinogenesis not elsewhere classified
subject: 110314 Orthopaedics
subject: 110604 Sports Medicine
subject: 110315 Otorhinolaryngology
subject: 111702 Aged Health Care
subject: 111403 Paediatrics
subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: 111799 Public Health and Health Services not elsewhere classified
subject: 110203 Respiratory Diseases
subject: 160807 Sociological Methodology and Research Methods
subject: FOS: Sociology
subject: 110323 Surgery

description: Supplemental material, sj-pdf-1-imr-10.1177_03000605221103959 for Warfarin resistance: possibilities to solve this problem. A case report by Halyna Mostbauer, Olga Nishkumay, Oksana Rokyta and Valeriia Vavryniuk in Journal of International Medical Research
Shotgun ion mobility mass spectrometry sequencing of heparan sulfate saccharides
Creators: name: Miller, Rebecca L.
name: Grabarics, Márkó
name: Manz, Christian
name: Hofmann, Johanna
name: Pagel, Kevin
name: Guimond, Scott E.
name: Schwörer, Ralf
name: Zubkova, Olga V.
name: Tyler, Peter C.
name: Xu, Yongmei
Publisher: name: Freie Universität Berlin
Year: 2020
Subjects: subject: carbohydrates
subject: glycobiology
subject: mass spectrometry
subject: 500 Naturwissenschaften und Mathematik::540 Chemie::547 Organische Chemie

description: Despite evident regulatory roles of heparan sulfate (HS) saccharides in numerous biological processes, definitive information on the bioactive sequences of these polymers is lacking, with only a handful of natural structures sequenced to date. Here, we develop a “Shotgun” Ion Mobility Mass Spectrometry Sequencing (SIMMS2) method in which intact HS saccharides are dissociated in an ion mobility mass spectrometer and collision cross section values of fragments measured. Matching of data for intact and fragment ions against known values for 36 fully defined HS saccharide structures (from di- to decasaccharides) permits unambiguous sequence determination of validated standards and unknown natural saccharides, notably including variants with 3O-sulfate groups. SIMMS2 analysis of two fibroblast growth factor-inhibiting hexasaccharides identified from a HS oligosaccharide library screen demonstrates that the approach allows elucidation of structure-activity relationships. SIMMS2 thus overcomes the bottleneck for decoding the informational content of functional HS motifs which is crucial for their future biomedical exploitation.
Additional file 1 of Determinants of hypertension among diabetic patients in southern Ethiopia: a case-control study
Creators: name: Anjajo, Eyosiyas Abreham
name: Workie, Shimelash Bitew
name: Tema, Zegeye Gelan
name: Woldegeorgis, Beshada Zerfu
name: Bogino, Efa Ambaw
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Supplementary Material 1 The questionnaire used for data collection in this study is included in the supplementary file.
A blue light receptor that mediates RNA binding and translational regulation
Creators: name: Weber, Anna M.
name: Schrottke, Stefanie
name: Bittl, Robert
name: Kaiser, Jennifer
name: Ziegler, Thea
name: Pilsl, Sebastian
name: Renzl, Christian
name: Sixt, Lisa
name: Pietruschka, Georg
name: Moniot, Sébastien
Publisher: name: Freie Universität Berlin
Year: 2019
Subjects: subject: RNA
subject: RNA-binding proteins
subject: X-ray crystallography
subject: 500 Naturwissenschaften und Mathematik::530 Physik::530 Physik

description: Sensory photoreceptor proteins underpin light-dependent adaptations in nature and enable the optogenetic control of organismal behavior and physiology. We identified the bacterial light-oxygen-voltage (LOV) photoreceptor PAL that sequence-specifically binds short RNA stem loops with around 20 nM affinity in blue light and weaker than 1 µM in darkness. A crystal structure rationalizes the unusual receptor architecture of PAL with C-terminal LOV photosensor and N-terminal effector units. The light-activated PAL–RNA interaction can be harnessed to regulate gene expression at the RNA level as a function of light in both bacteria and mammalian cells. The present results elucidate a new signal-transduction paradigm in LOV receptors and conjoin RNA biology with optogenetic regulation, thereby paving the way toward hitherto inaccessible optoribogenetic modalities.
51085: Journey to front line at Ypres Salient, March 1918. Description of trench construction in Ypres area.
Creators: name: Project Team, First World War Poetry Digital Archive
Publisher: name: University of Oxford
Year: 2024
Subjects: classificationCode: 430304
subject: British history
classificationCode: 430308
subject: European history (excl. British, classical Greek and Roman)
classificationCode: 430316
subject: International history

description: British civilian worked at Woolwich Arsenal, London, GB, 1916-1917; NCO served as battalion gas instructor with 23rd Bn Middlesex Regt on Western Front, 1918
sj-docx-1-jmh-10.1177_15579883231153018 – Supplemental material for Differences in Metabolomic Profiles by Birthplace in Mexican-Origin Hispanic Men Who Participated in a Weight Loss Lifestyle Intervention
Creators: name: Lopez-Pentecost, Melissa
name: Garcia, David O.
name: Sun, Xiaoxiao
name: Thomson, Cynthia A.
name: Chow, H.-H. Sherry
name: Martinez, Jessica A.
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: 111708 Health and Community Services
subject: FOS: Health sciences
subject: 111099 Nursing not elsewhere classified
subject: 111799 Public Health and Health Services not elsewhere classified

description: Supplemental material, sj-docx-1-jmh-10.1177_15579883231153018 for Differences in Metabolomic Profiles by Birthplace in Mexican-Origin Hispanic Men Who Participated in a Weight Loss Lifestyle Intervention by Melissa Lopez-Pentecost, David O. Garcia, Xiaoxiao Sun, Cynthia A. Thomson, H.-H. Sherry Chow and Jessica A. Martinez in American Journal of Men’s Health
Dynamical Organization of Syntaxin-1A at the Presynaptic Active Zone
Creators: name: Ullrich, Alexander
name: Böhme, Mathias A.
name: Schöneberg, Johannes
name: Depner, Harald
name: Sigrist, Stephan J.
name: Noé, Frank
Publisher: name: Freie Universität Berlin
Year: 2015
Subjects: subject: 500 Naturwissenschaften und Mathematik

description: Synaptic vesicle fusion is mediated by SNARE proteins forming in between synaptic vesicle (v-SNARE) and plasma membrane (t-SNARE), one of which is Syntaxin-1A. Although exocytosis mainly occurs at active zones, Syntaxin-1A appears to cover the entire neuronal membrane. By using STED super-resolution light microscopy and image analysis of Drosophila neuro-muscular junctions, we show that Syntaxin-1A clusters are more abundant and have an increased size at active zones. A computational particle-based model of syntaxin cluster formation and dynamics is developed. The model is parametrized to reproduce Syntaxin cluster-size distributions found by STED analysis, and successfully reproduces existing FRAP results. The model shows that the neuronal membrane is adjusted in a way to strike a balance between having most syntaxins stored in large clusters, while still keeping a mobile fraction of syntaxins free or in small clusters that can efficiently search the membrane or be traded between clusters. This balance is subtle and can be shifted toward almost no clustering and almost complete clustering by modifying the syntaxin interaction energy on the order of only 1 kBT. This capability appears to be exploited at active zones. The larger active-zone syntaxin clusters are more stable and provide regions of high docking and fusion capability, whereas the smaller clusters outside may serve as flexible reserve pool or sites of spontaneous ectopic release. Author Summary For the communication between two nerve cells, a synaptic vesicle containing neurotransmitters has to fuse with the neuronal membrane at a specific fusion site, releasing its signaling molecules. The vesicle fusion is mediated by a specific family of proteins (SNAREs) that are located on the vesicle as well as on the neuronal membrane. As many other membrane proteins, SNARE proteins are not uniformly distributed over the membrane but rather exist in complexes or clusters. Syntaxin, one of the SNARE proteins, is known to form such clusters through attractive protein- protein interactions. With the help of light microscopy techniques we show that the actual size and abundance of these clusters depends on its proximity to the fusion site on the membrane. We developed a computational model of Syntaxin cluster formation that can explain the observed differences in clustering and allow us to speculate on their potential role in the process of docking and fusion of synaptic vesicles. The formation of clusters through weak protein-protein interactions allow for a highly dynamic behavior of proteins, being able to easily switch between a state with stable and almost immobile clusters and a more dynamic situation with clusters exchanging particles at high rates.
Supplemental material - Myocardial protection using single dose del Nido Cardioplegia with and without topical cooling
Creators: name: Malinowski, Marcin
name: Solarewicz, Monica
name: Farley, Ryan
name: Salcido, Jose Rios
name: Bush, Jared
name: MacDoughall, Brian
name: Bromberg-White, Jennifer
name: Timek, Tomasz A
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: Cardiology
subject: 110323 Surgery
subject: FOS: Clinical medicine

description: Supplemental material for Myocardial protection using single dose del Nido Cardioplegia with and without topical cooling by Marcin Malinowski, Monica Solarewicz, Ryan Farley, Jose Rios Salcido, Jared Bush, Brian MacDoughall, Jennifer Bromberg-White and Tomasz A Timek in Perfusion
Additional file 1 of Dosage balance acts as a time-dependent selective barrier to subfunctionalization
Creators: name: Wilson, Amanda E.
name: Liberles, David A.
Publisher: name: figshare
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Evolutionary Biology
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Additional file 1: Figure S1.
sj-docx-1-tva-10.1177_15248380231155530 – Supplemental material for Domestic Violence in the Context of the COVID-19 Pandemic: A Synthesis of Systematic Reviews
Creators: name: Kim, Bitna
name: Royle, Meghan
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: 160299 Criminology not elsewhere classified
subject: FOS: Law

description: Supplemental material, sj-docx-1-tva-10.1177_15248380231155530 for Domestic Violence in the Context of the COVID-19 Pandemic: A Synthesis of Systematic Reviews by Bitna Kim and Meghan Royle in Trauma, Violence, & Abuse
Macroscopic thermodynamic reversibility in quantum many-body systems
Creators: name: Faist, Philippe
name: Sagawa, Takahiro
name: Kato, Kohtaro
name: Nagaoka, Hiroshi
name: Brandão, Fernando G. S. L.
Publisher: name: Freie Universität Berlin
Year: 2019
Subjects: subject: quantum statistical mechanics
subject: quantum thermodynamics
subject: resource theories
subject: thermodynamics
subject: 500 Naturwissenschaften und Mathematik::530 Physik::530 Physik

description: The resource theory of thermal operations, an established model for small-scale thermodynamics, provides an extension of equilibrium thermodynamics to nonequilibrium situations. On a lattice of any dimension with any translation-invariant local Hamiltonian, we identify a large set of translation-invariant states that can be reversibly converted to and from the thermal state with thermal operations and a small amount of coherence. These are the spatially ergodic states, i.e., states that have sharp statistics for any translation-invariant observable, and mixtures of such states with the same thermodynamic potential. As an intermediate result, we show for a general state that if the gap between the min- and the max-relative entropies to the thermal state is small, then the state can be approximately reversibly converted to and from the thermal state with thermal operations and a small source of coherence. Our proof provides a quantum version of the Shannon-McMillan-Breiman theorem for the relative entropy and a quantum Stein’s lemma for ergodic states and local Gibbs states. Our results provide a strong link between the abstract resource theory of thermodynamics and more realistic physical systems as we achieve a robust and operational characterization of the emergence of a thermodynamic potential in translation-invariant lattice systems.
sj-pdf-1-aut-10.1177_13623613231153694 – Supplemental material for Factors associated with mental health symptoms among UK autistic children and young people and their parents during the COVID-19 pandemic
Creators: name: Palmer, Melanie
name: Chandler, Susie
name: Carter Leno, Virginia
name: Mgaieth, Farah
name: Yorke, Isabel
name: Hollocks, Matthew
name: Pickles, Andrew
name: Slonims, Vicky
name: Scott, Stephen
name: Charman, Tony
name: Simonoff, Emily
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: FOS: Clinical medicine
subject: 111799 Public Health and Health Services not elsewhere classified
subject: FOS: Health sciences
subject: Education
subject: 130312 Special Education and Disability
subject: FOS: Educational sciences

description: Supplemental material, sj-pdf-1-aut-10.1177_13623613231153694 for Factors associated with mental health symptoms among UK autistic children and young people and their parents during the COVID-19 pandemic by Melanie Palmer, Susie Chandler, Virginia Carter Leno, Farah Mgaieth, Isabel Yorke, Matthew Hollocks, Andrew Pickles, Vicky Slonims, Stephen Scott, Tony Charman and Emily Simonoff in Autism
Bioinformatics - Investigating Sequence Similarity
Creators: name: Kleinschmit, Adam
name: Brink, Benita
name: Roof, Steven
name: Vig, Komal
name: Goller, Carlos
name: Robertson, Sabrina
Publisher: name: QUBES Educational Resources
Year: 2017

description: This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.
title: Floods and climate
title: emerging perspectives for flood risk assessment and management
titleType: Subtitle
Creators: name: Merz, B.
name: Aerts, J.
name: Arnbjerg-Nielsen, K.
name: Baldi, M.
name: Becker, A.
name: Bichet, A.
name: Blöschl, G.
name: Bouwer, L. M.
name: Brauer, Achim
name: Cioffi, F.
name: Delgado, J. M.
name: Gocht, M.
name: Guzzetti, F.
name: Harrigan, S.
name: Hirschboeck, K.
name: Kilsby, C.
name: Kron, W.
name: Kwon, H.-H.
name: Lall, U.
name: Merz, R.
name: Nissen, K.
name: Salvatti, P.
name: Swierczynski, T.
name: Ulbrich, U.
name: Viglione, A.
name: Ward, P. J.
name: Weiler, M.
name: Wilhelm, B.
name: Nied, M.
Publisher: name: Freie Universität Berlin
Year: 2014
Subjects: subject: 500 Naturwissenschaften und Mathematik::550 Geowissenschaften, Geologie::551 Geologie, Hydrologie, Meteorologie

description: Flood estimation and flood management have traditionally been the domain of hydrologists, water resources engineers and statisticians, and disciplinary approaches abound. Dominant views have been shaped; one example is the catchment perspective: floods are formed and influenced by the interaction of local, catchment-specific characteristics, such as meteorology, topography and geology. These traditional views have been beneficial, but they have a narrow framing. In this paper we contrast traditional views with broader perspectives that are emerging from an improved understanding of the climatic context of floods. We come to the following conclusions: (1) extending the traditional system boundaries (local catchment, recent decades, hydrological/hydraulic processes) opens up exciting possibilities for better understanding and improved tools for flood risk assessment and management. (2) Statistical approaches in flood estimation need to be complemented by the search for the causal mechanisms and dominant processes in the atmosphere, catchment and river system that leave their fingerprints on flood characteristics. (3) Natural climate variability leads to time-varying flood characteristics, and this variation may be partially quantifiable and predictable, with the perspective of dynamic, climate-informed flood risk management. (4) Efforts are needed to fully account for factors that contribute to changes in all three risk components (hazard, exposure, vulnerability) and to better understand the interactions between society and floods. (5) Given the global scale and societal importance, we call for the organization of an international multidisciplinary collaboration and data-sharing initiative to further understand the links between climate and flooding and to advance flood research.
sj-docx-2-ltr-10.1177_13621688231153622 – Supplemental material for Effects of participation in an online intercultural exchange on drivers of L2 learning motivation
Creators: name: Skidmore, Matthew
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: Education
subject: 200399 Language Studies not elsewhere classified
subject: FOS: Languages and literature

description: Supplemental material, sj-docx-2-ltr-10.1177_13621688231153622 for Effects of participation in an online intercultural exchange on drivers of L2 learning motivation by Matthew Skidmore in Language Teaching Research
sj-docx-2-pch-10.1177_21501351221127284 - Supplemental material for Influence of Body Mass Index in Donor–Recipient Size Mismatch in Pediatric Heart Transplantation
Creators: name: Lowrey, Laura K
name: Trivedi, Jaimin
name: Ramakrishnan, Karthik
name: Sinha, Pranava
name: Deshpande, Shriprasad R
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: Cardiology
subject: 111403 Paediatrics
subject: FOS: Clinical medicine
subject: 110323 Surgery

description: Supplemental material, sj-docx-2-pch-10.1177_21501351221127284 for Influence of Body Mass Index in Donor–Recipient Size Mismatch in Pediatric Heart Transplantation by Laura K Lowrey, Jaimin Trivedi, Karthik Ramakrishnan, Pranava Sinha and Shriprasad R Deshpande in World Journal for Pediatric and Congenital Heart Surgery
Dynamics and efficient conversion of excitons to trions in non-uniformly strained monolayer WS2
Creators: name: Harats, Moshe G.
name: Kirchhof, Jan N.
name: Qiao, Mengxiong
name: Greben, Kyrylo
name: Bolotin, Kirill
Publisher: name: Freie Universität Berlin
Year: 2020
Subjects: subject: condensed-matter physics
subject: optics
subject: photonics
subject: photonic devices
subject: 500 Naturwissenschaften und Mathematik::530 Physik::530 Physik

description: In recent years, there has been ongoing effort in achieving efficient transport of excitons in monolayer transition metal dichalcogenides subjected to highly non-uniform strain. Here we investigate the transport of excitons and trions in monolayer semiconductor WS2 subjected to controlled non-uniform mechanical strain. An atomic force microscope (AFM)-based setup is applied to actively control and tune the strain profiles by indenting the monolayer with an AFM tip. Optical spectroscopy is used to reveal the dynamics of the excited carriers. The non-uniform strain configuration locally changes the valence and conduction bands of WS2, giving rise to effective forces attracting excitons and trions towards the point of maximum strain underneath the AFM tip. We observe large changes in the photoluminescence spectra of WS2 under strain, which we interpret using a drift–diffusion model. We show that the transport of neutral excitons, a process that was previously thought to be efficient in non-uniformly strained two-dimensional semiconductors and termed as funnelling, is negligible at room temperature, in contrast to previous observations. Conversely, we discover that redistribution of free carriers under non-uniform strain profiles leads to highly efficient conversion of excitons to trions. Conversion efficiency reaches up to about 100% even without electrical gating. Our results explain inconsistencies in previous experiments and pave the way towards new types of optoelectronic devices.
sj-pdf-2-imr-10.1177_03000605231188287 - Supplemental material for Lung cancer with breast metastasis: a case report and review of the literature
Creators: name: Cao, Xuan
name: Chen, Peiqing
name: Agyekum, Enock Adjei
name: Zhang, Qing
name: Qian, Xiaoqin
name: Wu, Ting
name: Chambers, Kevoyne Hakeem
name: Yin, Liang
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: Health and Community Services
subject: Cardiology
subject: Dentistry not elsewhere classified
subject: Emergency Medicine
subject: Endocrinology
subject: Geriatrics and Gerontology
subject: Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: Nursing not elsewhere classified
subject: Nutrition and Dietetics not elsewhere classified
subject: Oncology and Carcinogenesis not elsewhere classified
subject: Orthopaedics
subject: Sports Medicine
subject: Otorhinolaryngology
subject: Aged Health Care
subject: Paediatrics
subject: Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: Psychology not elsewhere classified
subject: Psychiatry (incl. Psychotherapy)
subject: Public Health and Health Services not elsewhere classified
subject: Respiratory Diseases
subject: Sociological Methodology and Research Methods
subject: Surgery

description: Supplemental material, sj-pdf-2-imr-10.1177_03000605231188287 for Lung cancer with breast metastasis: a case report and review of the literature by Xuan Cao, Peiqing Chen, Enock Adjei Agyekum, Qing Zhang, Xiaoqin Qian, Ting Wu, Kevoyne Hakeem Chambers and Liang Yin in Journal of International Medical Research
Theory of hot electrons: general discussion
Creators: name: Aizpurua, Javier
name: Baletto, Francesca
name: Baumberg, Jeremy
name: Reich, Stephanie
name: Christopher, Phillip
name: Nijs, Bart De
name: Deshpande, Preeti
name: Fernandez, Yuri Diaz
name: Fabris, Laura
name: Freakley, Simon
Publisher: name: Freie Universität Berlin
Year: 2019
Subjects: subject: general discussion
subject: hot electrons
subject: microscopic processes
subject: 500 Naturwissenschaften und Mathematik::530 Physik::530 Physik

description: Sylwester Gawinkowski opened discussion of the paper by Javier Aizpurua: How many electrons are transferred by one ultrashort pulse? If you are thinking about applications in electronics, then it seems that this number may be too small. Is simply increasing the pulse energy and therefore significantly increasing the number of such emitted electrons possible?
sj-pdf-3-pil-10.1177_14644207231190491 - Supplemental material for A mini-review of surface severe plastic deformation methods and their effects on steel and stainless steel
Creators: name: Zhang, Luxia
name: Wu, Zhisheng
Publisher: name: SAGE Journals
Year: 2023
Subjects: Engineering not elsewhere classified

description: Supplemental material, sj-pdf-3-pil-10.1177_14644207231190491 for A mini-review of surface severe plastic deformation methods and their effects on steel and stainless steel by Luxia Zhang and Zhisheng Wu in Proceedings of the Institution of Mechanical Engineers, Part L: Journal of Materials: Design and Applications
sj-pdf-4-pil-10.1177_14644207231190491 - Supplemental material for A mini-review of surface severe plastic deformation methods and their effects on steel and stainless steel
Creators: name: Zhang, Luxia
name: Wu, Zhisheng
Publisher: name: SAGE Journals
Year: 2023
Subjects: Engineering not elsewhere classified

description: Supplemental material, sj-pdf-4-pil-10.1177_14644207231190491 for A mini-review of surface severe plastic deformation methods and their effects on steel and stainless steel by Luxia Zhang and Zhisheng Wu in Proceedings of the Institution of Mechanical Engineers, Part L: Journal of Materials: Design and Applications
sj-pdf-7-pil-10.1177_14644207231190491 - Supplemental material for A mini-review of surface severe plastic deformation methods and their effects on steel and stainless steel
Creators: name: Zhang, Luxia
name: Wu, Zhisheng
Publisher: name: SAGE Journals
Year: 2023
Subjects: Engineering not elsewhere classified

description: Supplemental material, sj-pdf-7-pil-10.1177_14644207231190491 for A mini-review of surface severe plastic deformation methods and their effects on steel and stainless steel by Luxia Zhang and Zhisheng Wu in Proceedings of the Institution of Mechanical Engineers, Part L: Journal of Materials: Design and Applications
Atomic-resolution imaging of carbonyl sulfide by laser-induced electron diffraction
Creators: name: Karamatskos, Evangelos T.
name: Goldsztejn, Gildas
name: Raabe, Sebastian
name: Stammer, Philipp
name: Vrakking, Marc J. J.
name: Rouzée, Arnaud
name: Mullins, Terry
name: Trabattoni, Andrea
name: Johansen, Rasmus R.
name: Stapelfeldt, Henrik
Publisher: name: Freie Universität Berlin
Year: 2019
Subjects: subject: carbonyl sulfide
subject: laser-induced electron diffraction
subject: atomic-resolution imaging
subject: 500 Naturwissenschaften und Mathematik::540 Chemie::541 Physikalische Chemie
subject: 500 Naturwissenschaften und Mathematik::530 Physik::530 Physik

description: Measurements on the strong-field ionization of carbonyl sulfide molecules by short, intense, 2 µm wavelength laser pulses are presented from experiments where angle-resolved photoelectron distributions were recorded with a high-energy velocity map imaging spectrometer, designed to reach a maximum kinetic energy of 500 eV. The laser-field-free elastic-scattering cross section of carbonyl sulfide was extracted from the measurements and is found in good agreement with previous experiments, performed using conventional electron diffraction. By comparing our measurements to the results of calculations, based on the quantitative rescattering theory, the bond lengths and molecular geometry were extracted from the experimental differential cross sections to a precision better than ±5 pm and in agreement with the known values.
sj-pdf-1-smm-10.1177_09622802231184636 - Supplemental material for Reducing the false discovery rate of preclinical animal research with Bayesian statistical decision criteria
Creators: name: Kelter, Riko
Publisher: name: SAGE Journals
Year: 2023
Subjects: Health and Community Services
Nursing not elsewhere classified
Sociological Methodology and Research Methods

description: Supplemental material, sj-pdf-1-smm-10.1177_09622802231184636 for Reducing the false discovery rate of preclinical animal research with Bayesian statistical decision criteria by Riko Kelter in Statistical Methods in Medical Research
Breaking the silence of the 500-year-old smiling garden of everlasting flowers: The En Tibi book herbarium
Creators: name: Stefanaki, Anastasia
name: Thurn, Nikolaus
name: Porck, Henk
name: Grimaldi, Ilaria Maria
name: Pugliano, Valentina
name: Kardinaal, Adriaan
name: Salemink, Jochem
name: Thijsse, Gerard
name: Chavannes-Mazel, Claudine
name: Kwakkel, Erik
Publisher: name: Freie Universität Berlin
Year: 2019
Subjects: subject: En Tibi book herbarium
subject: botanical collection
subject: dried plants
subject: 500 Naturwissenschaften und Mathematik::580 Pflanzen (Botanik)::580 Pflanzen (Botanik)
subject: 800 Literatur::870 Lateinische, italische Literaturen::870 Italische Literaturen; Lateinische Literatur

description: We reveal the enigmatic origin of one of the earliest surviving botanical collections. The 16th-century Italian En Tibi herbarium is a large, luxurious book with c. 500 dried plants, made in the Renaissance scholarly circles that developed botany as a distinct discipline. Its Latin inscription, translated as “Here for you a smiling garden of everlasting flowers”, suggests that this herbarium was a gift for a patron of the emerging botanical science. We follow an integrative approach that includes a botanical similarity estimation of the En Tibi with contemporary herbaria (Aldrovandi, Cesalpino, “Cibo”, Merini, Estense) and analysis of the book’s watermark, paper, binding, handwriting, Latin inscription and the morphology and DNA of hairs mounted under specimens. Rejecting the previous origin hypothesis (Ferrara, 1542–1544), we show that the En Tibi was made in Bologna around 1558. We attribute the En Tibi herbarium to Francesco Petrollini, a neglected 16th-century botanist, to whom also belongs, as clarified herein, the controversial “Erbario Cibo” kept in Rome. The En Tibi was probably a work on commission for Petrollini, who provided the plant material for the book. Other people were apparently involved in the compilation and offering of this precious gift to a yet unknown person, possibly the Habsburg Emperor Ferdinand I. The En Tibi herbarium is a Renaissance masterpiece of art and science, representing the quest for truth in herbal medicine and botany. Our multidisciplinary approach can serve as a guideline for deciphering other anonymous herbaria, kept safely “hidden” in treasure rooms of universities, libraries and museums.
Serological and molecular detection of bovine brucellosis at institutional livestock farms in Punjab, Pakistan
Creators: name: Jamil, Tariq
name: Schwarz, Stefan
name: Melzer, Falk
name: Saqib, Muhammad
name: Shahzad, Asim
name: Kasi, Khushal Khan
name: Hussain, Muhammad Hammad
name: Rashid, Imaad
name: Tahir, Usman
name: Khan, Iahtasham
Publisher: name: Freie Universität Berlin
Year: 2020
Subjects: subject: bovine brucellosis
subject: zoonosis
subject: Brucella abortus
subject: Pakistan
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::616 Krankheiten
subject: 500 Naturwissenschaften und Mathematik::570 Biowissenschaften; Biologie::570 Biowissenschaften; Biologie

description: Bovine brucellosis remains a persistent infection in ruminants in Pakistan. A total of 828 (409 buffaloes and 419 cattle) sera were collected from 11 institutional-owned livestock farms in Punjab, Pakistan. The samples were tested by rose bengal plate agglutination test (RBPT) and indirect enzyme-linked immunosorbent assay (iELISA). The seroprevalence along with 95% confidence interval (CI) was determined. Univariable and multivariable analysis of the epidemiological background data was conducted and odds ratio (OR) was calculated to understand any association between the risk factors and the seroprevalence. An overall seroprevalence of 3.9% (Positive/Tested = 32/828) and 3.3% (27/828) was detected by RBPT and iELISA, respectively. The seroprevalence of 5.6% (CI 3.6–8.3) and 4.7%, (CI 2.8–7.2) and the odds ratio of 2.63 (CI 1.20–5.77) and 2.50 (CI 1.08–5.78) for testing positive by RBPT and iELISA, respectively were significantly higher (p < 0.05) in buffaloes than in cattle. Breed, sex, history of abortion and retention of fetal membranes (RFM) in the animals were not found statistically significantly associated with the infection. RBPT and iELISA based results agreed almost perfect (k = 0.877). In total, Brucella abortus-DNA (9/27) was amplified from seropositive samples by real-time polymerase chain reaction. This study identified for the first time the etiological agents of brucellosis at a molecular level at institutional-owned livestock farms in Pakistan. View Full-Text
Functional traits and spatio-temporal structure of a major group of soil protists (rhizaria: cercozoa) in a temperate grassland
Creators: name: Fiore-Donno, Anna Maria
name: Degrune, Florine
name: Rillig, Matthias C.
name: Richter-Heitmann, Tim
name: Dumack, Kenneth
name: Regan, Kathleen M.
name: Marhan, Sven
name: Boeddinghaus, Runa S.
name: Friedrich, Michael W.
name: Kandeler, Ellen
Publisher: name: Freie Universität Berlin
Year: 2019
Subjects: subject: biogeography
subject: functional traits
subject: soil ecology
subject: protozoa
subject: microbial assembly
subject: environmental selection
subject: dispersal limitation
subject: soil protists
subject: 500 Naturwissenschaften und Mathematik::570 Biowissenschaften; Biologie::577 Ökologie

description: Soil protists are increasingly appreciated as essential components of soil foodwebs; however, there is a dearth of information on the factors structuring their communities. Here we investigate the importance of different biotic and abiotic factors as key drivers of spatial and seasonal distribution of protistan communities. We conducted an intensive survey of a 10 m2 grassland plot in Germany, focusing on a major group of protists, the Cercozoa. From 177 soil samples, collected from April to November, we obtained 694 Operational Taxonomy Units representing >6 million Illumina reads. All major cercozoan taxonomic and functional groups were present, dominated by the small flagellates of the Glissomonadida. We found evidence of environmental selection structuring the cercozoan communities both spatially and seasonally. Spatial analyses indicated that communities were correlated within a range of 3.5 m. Seasonal variations in the abundance of bacterivores and bacteria, followed by that of omnivores suggested a dynamic prey-predator succession. The most influential edaphic properties were moisture and clay content, which differentially affected each functional group. Our study is based on an intense sampling of protists at a small scale, thus providing a detailed description of the biodiversity of different taxa/functional groups and the ecological processes involved in shaping their distribution.
Identification of chitinase-3-like protein 1 as a novel neutrophil antigenic target in Crohn’s disease
Creators: name: Deutschmann, Claudia
name: Sowa, Mandy
name: Murugaiyan, Jayaseelan
name: Roesler, Uwe
name: Röber, Nadja
name: Conrad, Karsten
name: Laass, Martin W.
name: Bogdanos, Dimitrios
name: Sipeki, Nora
name: Papp, Maria
Publisher: name: Freie Universität Berlin
Year: 2019
Subjects: subject: inflammatory bowel disease
subject: chitinase-3 like protein 1
subject: autoantibody
subject: Crohn’s disease
subject: enzyme-linked immunosorbent assay
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::616 Krankheiten

description: Background and Aims There is an increasing incidence of inflammatory bowel disease [IBD]. Autoimmune responses are involved in the pathophysiology of IBD, but their underlying pathways and target antigens have not yet been fully elucidated. Methods Autoantigenic targets in IBD were identified after separation of whole cell proteins isolated from neutrophils using two-dimensional electrophoresis and matrix assisted laser desorption ionization – time of flight mass spectrometry-based protein identification of the spots that displayed Western blotting signals with anti-neutrophil cytoplasmic antibody-positive sera. The prevalence of IgG, IgA and secretory IgA [sIgA] to chitinase 3-like protein 1 [CHI3L1] was analysed by enzyme-linked immunosorbent assays using recombinant CHI3L1 in 110 patients with Crohn’s disease [CD], 95 with ulcerative colitis [UC], 126 with coeliac disease [CeD] and 86 healthy controls [HCs]. Results The 18-glycosylhydrolase family member CHI3L1 was identified as a neutrophil autoantigenic target. CD patients displayed significantly higher levels of IgG to CHI3L1 than patients with UC and CeD (p < 0.0001, respectively). IgA and sIgA to CHI3L1 was significantly higher in CD than in UC, CeD and HCs [p < 0.0001, respectively]. IgA and sIgA to CHI3L1 demonstrated the highest prevalence in CD [25.5%, 28/110; and 41.8%%, 46/110] compared to HCs [2.3%, 2/86; and 4.7%%, 4/86; p = 0.0015 and p < 0.0001] and are associated with a more complicated progression of CD. Conclusion CHI3L1 is a novel neutrophil autoantigenic target in CD. IgA and sIgA to CHI3L1 may serve as novel markers for CD and may facilitate the serological diagnosis of IBD.
A new azobenzene-based design strategy for detergents in membrane protein research
Creators: name: Urner, Leonhard H.
name: Schulze, Maiko
name: Maier, Yasmine B.
name: Hoffmann, Waldemar
name: Folmert, Kristin
name: Manz, Christian
name: Haag, Rainer
name: Pagel, Kevin
name: Warnke, Stephan
name: Liko, Idlir
Publisher: name: Freie Universität Berlin
Year: 2020
Subjects: subject: detergents
subject: membrane protein
subject: azobenzene-based design strategy
subject: 500 Naturwissenschaften und Mathematik::540 Chemie::547 Organische Chemie

description: Mass spectrometry enables the in-depth structural elucidation of membrane protein complexes, which is of great interest in structural biology and drug discovery. Recent breakthroughs in this field revealed the need for design rules that allow fine-tuning the properties of detergents in solution and gas phase. Desirable features include protein charge reduction, because it helps to preserve native features of protein complexes during transfer from solution into the vacuum of a mass spectrometer. Addressing this challenge, we here present the first systematic gas-phase study of azobenzene detergents. The utility of gas-phase techniques for monitoring light-driven changes of isomer ratios and molecular properties are investigated in detail. This leads to the first azobenzene detergent that enables the native mass spectrometry analysis of membrane proteins and whose charge-reducing properties can be tuned by irradiation with light. More broadly, the presented work outlines new avenues for the high-throughput characterization of supramolecular systems and opens a new design strategy for detergents in membrane protein research.
Additional file 1 of Toward microfluidic SERS and EC-SERS applications via tunable gold films over nanospheres
Creators: name: Falamas, Alexandra
name: Cuibus, Denisa
name: Tosa, Nicoleta
name: Brezestean, Ioana
name: Muntean, Cristina M.
name: Milenko, Karolina
name: Vereshchagina, Elizaveta
name: Moldovan, Rebeca
name: Bodoki, Ede
name: Farcau, Cosmin
Publisher: name: figshare
Year: 2024
Subjects: subject: Biophysics
subject: Space Science
subject: Physical Sciences not elsewhere classified
subject: Medicine
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Hematology
subject: Plant Biology
subject: Computational Biology

description: Supplementary file 1