cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 2: of
                     Gyrodactylus spp. diversity in native and introduced minnow (Phoxinus phoxinus) populations: no support for “the enemy release” hypothesis
Creators: name: Pettersen, Ruben
name: Østbye, Kjartan
name: Holmen, Johannes
name: Vøllestad, Leif
name: Mo, Tor
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Computational Biology

description: A table of tests result of demographic bottleneck. All the Norwegian minnow (Phoxinus phoxinus) populations used in the study. Information from tests of demographic bottleneck using Bottleneck 1.2.0.2. (Piry et al. 1999) with the two-phase model (TPM) and the Wilcoxon sign-rank test, and demographic expansion (where the intra-locus k-test identify signals of recent population expansion, while the inter-locus g-test identify signals of more ancient population expansion) using Kg-test (Reich et al. 1999). Footnotes: *Samples used in the rarefaction analysis using EstimateS 8.2.0 (Colwell 2011) where more than 5 Gyrodactylus spp. individuals were observed in the population. This number of observed Gyrodactylus spp. individuals is needed to calculate rarefaction in EstimateS 8.2.0. # None of tests were significant. (DOC 116 kb)
Additional file 3: of
                     Gyrodactylus spp. diversity in native and introduced minnow (Phoxinus phoxinus) populations: no support for “the enemy release” hypothesis
Creators: name: Pettersen, Ruben
name: Østbye, Kjartan
name: Holmen, Johannes
name: Vøllestad, Leif
name: Mo, Tor
Publisher: name: Figshare
Year: 2016
Subjects: subject: Molecular Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology
subject: Computational Biology

description: Figure of distribution of Gyrodactylus spp. individuals. Distribution of Gyrodactylus spp. individuals in the total dataset of 1278 individual minnows (Phoxinus phoxinus) hosts from 43 populations in Norway. Here the 14 native and 23 stocked populations have been pooled. On the left axis is the probability of occurrence and on right axis is given counts. (DOCX 76 kb)
Realitycheck der Ambitionen der Schweizer Digitalaussenpolitik
Creators: name: Kohler, Kevin
name: Pangrazzi, Sara
name: Zahn, Nicolas
Publisher: name: ETH Zurich
Year: 2022
Subjects: Digitalisierung
Aussenpolitik
Herausforderungen
Lösungsansätze
Handlungsvorschläge

description: Die Digitalisierung beschäftigt auch die Aussenpolitik. In diesem Diskussionspapier von foraus präsentieren CSS Forscher Kevin Kohler, Sara Pangrazzi und Nicolas Zahn einen Überblick über die Ambitionen der Schweiz in der Digitalaussenpolitik und identifizieren Herausforderungen und Lösungsansätze zur Realisierung dieser Handlungsvorschläge.
description: Digitalization is also affecting foreign policy. In this discussion paper by foraus, CSS' Kevin Kohler, Sara Pangrazzi and Nicolas Zahn present an overview of Switzerland's ambitions in digital foreign policy and identify challenges and possible solutions for realizing these proposals for action.
Additional file 3: of Patterns of foot complaints in systemic lupus erythematosus: a cross sectional survey
Creators: name: Otter, Simon
name: Kumar, Sunil
name: Gow, Peter
name: Dalbeth, Nicola
name: Corkill, Michael
name: Rohan, Maheswaran
name: Davies, Kevin
name: Pankathelam, Sam
name: Rome, Keith
Publisher: name: Figshare
Year: 2016
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: Pilot study results. This file details the findings from the pilot study used to test the questionnaire in itâ  s final stage of development. (DOCX 15 kb)
Additional file 1: of Patterns of foot complaints in systemic lupus erythematosus: a cross sectional survey
Creators: name: Otter, Simon
name: Kumar, Sunil
name: Gow, Peter
name: Dalbeth, Nicola
name: Corkill, Michael
name: Rohan, Maheswaran
name: Davies, Kevin
name: Pankathelam, Sam
name: Rome, Keith
Publisher: name: Figshare
Year: 2016
Subjects: subject: Molecular Biology
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy
subject: 60506 Virology

description: Questionnaire to survey foot complaints among people with systemic lupus erythematosus. This file contains a final copy of the questionnaire posted to people with SLE. (PDF 269 kb)
Additional file 2: of Patterns of foot complaints in systemic lupus erythematosus: a cross sectional survey
Creators: name: Otter, Simon
name: Kumar, Sunil
name: Gow, Peter
name: Dalbeth, Nicola
name: Corkill, Michael
name: Rohan, Maheswaran
name: Davies, Kevin
name: Pankathelam, Sam
name: Rome, Keith
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: Development of the questionnaire. This file contains a detailed report of the steps taken to develop and test the questionnaire. (DOCX 21 kb)
Amphinectomys Malygin, Aniskin, Isaev & Milishnikov 1994
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Cricetidae
Amphinectomys

description: Amphinectomys Malygin, Aniskin, Isaev & Milishnikov 1994
Monotypic genus represented by A. savamis (Malygin, Aniskin, Isaev & Milishnikov 1994), known from only a few specimens collected in Ecuador and northeastern Peru, Departamento Loreto and Departamento Ucayali (in the Sierra del Divisor), near the Peruvian-Brazilian border (Malygin et al. 1994; Weksler & Valqui 2015; Chiquito & Percequillo 2016).
Karyotype: 2n = 50 and FN = 62.Autosomal complement: four submetacentric pairs (three large and one small), two small metacentric pairs, one small subtelocentric pair, and 17 acrocentric pairs (seven large to small and ten very small). Sex chromosomes: X, a metacentric (the largest chromosome of the complement); Y, a large metacentric (Malygin et al. 1994, Fig. 6I). C- and G-banding were also performed (Malygin et al. 1994; O’Brien et al. 2006, pp. 194).
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 7, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Additional file 4: of Emergency Department and Inpatient Healthcare utilization due to Hypertension
Creators: name: Singh, Jasvinder
name: Shaohua Yu
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biotechnology
subject: 60506 Virology
subject: FOS: Biological sciences

description: Predictors of Log of duration of hospital stay* among patients with hypertension who were admitted to the hospital after presenting to ED with hypertension as the primary diagnosis using linear regression. (DOC 38 kb)
Cerradomys Weksler, Percequillo & Voss 2006
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Cricetidae
Cerradomys

description: Cerradomys Weksler, Percequillo & Voss 2006
The genus Cerradomys comprises eight species, namely: C. akroai (Bonvicino, Casado & Weksler 2014), C. goytaca (Tavares, Pêssoa & Gonçalves 2011), C. langguthi (Percequillo, Hingst-Zaher & Bonvincino 2008), C. maracajuensis (Langguth & Bonvincino 2002), C. marinhus (Bonvincino 2003), C. scotti (Langguth & Bonvincino 2002), C. subflavus (Wagner 1842), and C. vivoi (Percequillo, Hingst-Zaher & Bonvincino 2008). These species occur in the open vegetation belt that crosses South America from north-eastern Brazil to south-eastern Bolivia and north-western Paraguay (Weksler et al. 2006; Percequillo et al. 2008; Prado & Percequillo 2013; Percequillo 2015b). All cytogenetic data available for the genus was presented on Table 2, and the distribution of diploid and fundamental number of karyotyped specimens were presented on Fig. 2.
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 7, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Additional file 2: of Emergency Department and Inpatient Healthcare utilization due to Hypertension
Creators: name: Singh, Jasvinder
name: Shaohua Yu
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biotechnology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: 60506 Virology
subject: Computational Biology

description: Predictors of ED charges among patients presenting to ED with hypertension using linear regression. (DOC 59 kb)
Additional file 7: of Emergency Department and Inpatient Healthcare utilization due to Hypertension
Creators: name: Singh, Jasvinder
name: Shaohua Yu
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Marine Biology
subject: Science Policy
subject: 60506 Virology

description: Predictors of log of total hospital charges among patients who were admitted to the hospital after an ED visit with hypertension as the primary diagnosis using linear regression. (DOC 60 kb)
Additional file 1: of Emergency Department and Inpatient Healthcare utilization due to Hypertension
Creators: name: Singh, Jasvinder
name: Shaohua Yu
Publisher: name: Figshare
Year: 2016
Subjects: subject: Molecular Biology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: Computational Biology

description: Patient Outcomes for ED visits with hypertension as the primary diagnosis. (DOC 37 kb)
Additional file 3: of Emergency Department and Inpatient Healthcare utilization due to Hypertension
Creators: name: Singh, Jasvinder
name: Shaohua Yu
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 60506 Virology
subject: Computational Biology

description: Characteristics of patients with Hypertension ED visits with and without hospitalization. (DOC 56 kb)
Cerradomys akroai
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Cricetidae
Cerradomys
Cerradomys akroai

description: Cerradomys akroai
Karyotype: 2n = 60 and FN = 74. Autosomal complement: eight biarmed pairs (one large and seven small), and 21 acrocentric pairs large to small decreasing in size. Sex chromosomes: X, a large submetacentric; Y, a small acrocentric (Bonvicino et al. 2014, pp. 529, Fig. 3).
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 7, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Additional file 15: Figure S12. of
                     ZFAS1: a long noncoding RNA associated with ribosomes in breast cancer cells
Creators: name: Herah Hansji
name: Leung, Euphemia
name: Baguley, Bruce
name: Finlay, Graeme
name: Cameron-Smith, David
name: Vandre Figueiredo
name: Askarian-Amiri, Marjan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Biotechnology
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Plant Biology

description: ZFAS1 is associated with actively translating ribosomes. (A) Polysome distribution of MDA-MB-468 cell lysates as separated on a 7–47 % sucrose gradient. Absorbance at 260 nm is shown on the Y axis. Fractions from the top of the gradient to the bottom are shown from left to right on the X axis. Fractions were collected in 36 equal volumes, of which every third was used for RNA extraction, and cDNA synthesised for PCR. (B) Polysome distribution of MDA-MB-468 cell lysate separated on a 7–47 % sucrose gradient containing EDTA instead of MgCl2. Loss of the polysome peak is observed, together with a leftward shift of the ribosome subunits. (C) and (D) Quantitative expression of ZFAS1 and GAPDH measured by qPCR relative to 18S and 28S rRNAs prepared with and without the addition of EDTA. Arrows indicate where ribosomal features are observed on profiles in relation to fraction number. (PDF 536 kb)
Influence of synoptic scale weather variability on ice speed-up events in Southwest Greenland
Creators: name: Schmid, Timo
Publisher: name: ETH Zurich
Year: 2021
Subjects: Greenland ice sheet
Atmospheric dynamics
Glaciology

description: The Greenland Ice Sheet (GrIS) has experienced increasing ice loss in the past decades and the trend is expected to continue due to climate change. However, large uncertainties about the magnitude of Greenland’s future ice loss remain. One process that contributes to this uncertainty are transient ice accelerations, so-called ice speed-up events, caused by a short-term increase in rain-/meltwater, which descends to the glacier bed and can enhance basal sliding. Here, we investigate this phenomenon focusing on two main objectives. First, we present an analysis of local conditions on the Russell glacier in Southwest Greenland, which confirms the importance of meltwater variability for ice speed-up events. We find the strongest influence in early summer with correlations between surface melt and ice velocities above 0.8 in May and identify a typical lag of zero to one day between meltwater peaks and their ice velocity responses. Contrastingly, we find rainfall to have a minor influence with only 4 out of 51 ice speed-up events, where daily increases in water input on the glacier are dominated by rainfall. Secondly, we study the atmospheric drivers of ice speed-up events using a Self-Organizing Maps (SOM) classification of synoptic weather situations over Greenland. Two main patterns that induce most ice speed-up events emerge: The first pattern is characterized by southerly advection of warm and moist air that increases local surface melting by enhanced downward longwave radiation and high sensible heat flux. The second one is a large-scale anticyclone that induces GrIS surface melting through strong downward shortwave radiation and descending air that warm adiabatically. Our study provides new insights into atmospheric drivers of short-term ice accelerations and contributes towards an effort to constrain the impact of ice speed-up events on GrIS mass loss under a changing climate, which can be achieved when more high-resolution ice velocity data is available.
Additional file 14: Figure S11. of
                     ZFAS1: a long noncoding RNA associated with ribosomes in breast cancer cells
Creators: name: Herah Hansji
name: Leung, Euphemia
name: Baguley, Bruce
name: Finlay, Graeme
name: Cameron-Smith, David
name: Vandre Figueiredo
name: Askarian-Amiri, Marjan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Hematology

description: The presence of ZFAS1, 18S and 28S expression were assessed by qPCR using fractions derived from dissociated ribosomes (Fig.Â 4i). Red bars show the samples derived from the peak of the graph in Fig. 4Ai for 40S and 60S subunit. (PDF 235 kb)
A Zurich pedestrian route choice model based on BFSLE choice set generation
Creators: name: Isenschmid, Ueli
name: Widmer, Austin
name: Meister, Adrian
name: Felder, Matteo
name: Axhausen, Kay W.
Publisher: name: ETH Zurich
Year: 2022
Subjects: Discrete choice modeling
Pedestrian route choice
Pedestrian route preference
BFSLE

description: Arbeitsberichte Verkehrs- und Raumplanung, 1765
Additional file 13: Figure S10. of
                     ZFAS1: a long noncoding RNA associated with ribosomes in breast cancer cells
Creators: name: Herah Hansji
name: Leung, Euphemia
name: Baguley, Bruce
name: Finlay, Graeme
name: Cameron-Smith, David
name: Vandre Figueiredo
name: Askarian-Amiri, Marjan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Hematology

description: Primer efficiency of ZFAS1 and ZNFX1. A) The primer efficiency test for the primers used in the experiments. B) Slopes of standard curve indicate PCR efficiency for ZFAS1 and ZNFX1 primers sets. The X axis represent the log of dilution. Y axis shows Ct values. C) Correlation between the expression of ZFAS1 and ZNFX1 in two different primer sets in panel of cell lines (PDF 317 kb)
Additional file 9: Table S2. of
                     ZFAS1: a long noncoding RNA associated with ribosomes in breast cancer cells
Creators: name: Herah Hansji
name: Leung, Euphemia
name: Baguley, Bruce
name: Finlay, Graeme
name: Cameron-Smith, David
name: Vandre Figueiredo
name: Askarian-Amiri, Marjan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Plant Biology

description: List of primers used in these experiments. The sequences are 5â ˛ to 3â ˛. (DOC 43 kb)
Estimation of contact and disturbance forces and interaction force tracking with an aerial manipulator
Creators: name: Malczyk, Grzegorz
Publisher: name: ETH Zurich
Year: 2022
Subjects: ROBOTICS
Aerial robotics
Aerial manipulation
CONTROL (MECHANICAL ENGINEERING)
Hybrid control
ESTIMATION (STOCHASTIC PROCESSES)
Extended Kalman filter (EKF)
Force/torque sensor
Aerial physical interaction
PARALLEL MANIPULATORS (ROBOTICS)
info:eu-repo/classification/ddc/620
Engineering & allied operations

description: Over-actuated MAVs have received growing attention in recent years as they allow for physical interaction with their environment. Most interaction tasks so far have been conducted in controlled laboratory environments with little to no outside disturbances.

To perform high-accuracy interaction tasks in outdoor conditions, we need a method to reliably distinguish wrenches (i.e. forces and torques) that arise from interaction at the contact point from those that arise from external disturbances (such as aerodynamic effects from wind).

The applicable methods to achieve this depend heavily on the used sensor equipment. Therefore, we propose to use a combination of odometry and force/torque sensors, together with an analytical model of the platform dynamics. Thus we can
estimate contact and disturbance wrenches simultaneously.

In this project, we present a model-based filtering method, namely Extended Kalman Filter (EKF). Following this, an estimation framework is designed and implemented in simulation and verified on the physical platform. With a combination of a novel
(especially for MAVs) hybrid motion-force controller, we enable physical interaction of such vehicles with the environment under the presence of external disturbance. For a contact-based inspection, we provide the platform with two types of manipulators. Initially, we validate our approach with a simple rigid manipulator and subsequently with a delta arm attached to the vehicle. We prove the ability of the entire control framework in real-world experiments. Thus, we verify the quality of the estimates by comparing them to ground-truth measurements and showcasing
possible industrial applications.
Cerradomys goytaca
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Cricetidae
Cerradomys
Cerradomys goytaca

description: Cerradomys goytaca
Karyotype: 2n = 54 and FN = 66. Autosomal complement: seven metacentric and submetacentric pairs (three large and four small), and 19 acrocentric pairs (one large and the remaining medium to small). Sex chromosomes: X, a large subtelocentric; Y, was a medium acrocentric (Tavares et al. 2011, pp. 651, Fig. 4). The same diploid number was reported by Bonvicino et al. (2014, pp. 529, Fig. 10), but the authors reported a different fundamental number of 62 and 63, due to a presence of two small acrocentric pairs instead of two small submetacentrics, and due to a pericentric inversion involving one chromosome of a small autosome pair.
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 7, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Understanding of group travel and weekend travel behavior for on-demand mobility services
Creators: name: Kagho, Grace Orowo
name: Balać, Miloš
name: Axhausen, Kay W.
Publisher: name: ETH Zurich
Year: 2022
Subjects: On-demand mobility
SAVs
Ridesharing
Weekend models
Group travel
MATSim

description: Arbeitsberichte Verkehrs- und Raumplanung, 1771
Additional file 1: Figure S1. of
                     ZFAS1: a long noncoding RNA associated with ribosomes in breast cancer cells
Creators: name: Herah Hansji
name: Leung, Euphemia
name: Baguley, Bruce
name: Finlay, Graeme
name: Cameron-Smith, David
name: Vandre Figueiredo
name: Askarian-Amiri, Marjan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: ZFAS1 is unlikely to encode a protein. Ribosome occupancy derived from multiple ribosome profiling studies according to the GWIPS database is mapped to ZFAS1. Red peaks from ribosome profile indicate the level of ribosome occupancy whereas green peaks from mRNA seq coverage indicate the level of transcription of a particular gene region. ZFAS1 is indicated in blue, with numbers indicating nucleotide number for each exon above the gene layout. Potential open reading frames, shown in pink, were predicted using ExPASy and mapped to the genomic layout of ZFAS1. Peaks corresponding to ribosome occupancy were then overlaid with ORFs, with the peaks mapping to snoRNAs in the intronic regions of ZFAS1. (PDF 271 kb)
Additional file 16: Figure S13. of
                     ZFAS1: a long noncoding RNA associated with ribosomes in breast cancer cells
Creators: name: Herah Hansji
name: Leung, Euphemia
name: Baguley, Bruce
name: Finlay, Graeme
name: Cameron-Smith, David
name: Vandre Figueiredo
name: Askarian-Amiri, Marjan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Cell Biology
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Plant Biology

description: ZFAS1 is associated with actively translating ribosomes. (A and B) Polysome distribution of MDA-MB-468 cell lysate derived from cells treated with and without puromycin as separated on a 7–47 % sucrose gradient. Absorbance at 260 nm is shown on the Y axis. Fractions from the top of the gradient to the bottom are shown from left to right on the X axis. Fractions were collected in 36 equal volumes, of which every third was used for RNA extraction, and cDNA synthesised for PCR. (C and D) Quantitative expression of ZFAS1 measured by qPCR from fractions collected from 7–47 % sucrose gradient. The result present the abundance of ZFAS1 in control (untreated) and cells treated with puromycin for 30 min. ZFAS1 peak is shifted toward left in puromycin treated cells. (E and F) Quantitative expression of GAPDH measured by qPCR, from fractions collected from 7–47 % sucrose gradient. The result present the abundance of GAPDH in control (untreated) and cells treated with puromycin for 30 min. GAPDH peak is shifted toward left in puromycin treated cells. Left and right boxes are presenting results from two independent experiments. (PDF 248 kb)
Additional file 8: Figure S7. of
                     ZFAS1: a long noncoding RNA associated with ribosomes in breast cancer cells
Creators: name: Herah Hansji
name: Leung, Euphemia
name: Baguley, Bruce
name: Finlay, Graeme
name: Cameron-Smith, David
name: Vandre Figueiredo
name: Askarian-Amiri, Marjan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Plant Biology

description: Effect of cycloheximide, a translational inhibitor, on the abundance of ZFAS1 and GAS5. Relative expression of genes was measured by qPCR using total RNA extracted from each cell. 18S and 28S rRNA transcripts were used to normalise the expression of ZFAS1 and GAS5. The Y axis represents the fold change relative to time 0. The X axis shows treatment time. Error bars are SEM of three biological replicates, p values were calculated using Studentâ  s t test. (PDF 136 kb)
Litoribates Pfingstl & Schatz, 2017, gen. nov.
Creators: name: Pfingstl, Tobias
name: Schatz, Heinrich
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Sarcoptiformes
Fortuyniidae
Litoribates

description: Litoribates gen. nov.
Diagnosis. Medium sized (307–342 µm body length) brown sclerotized intertidal mites. Lamellar ridges present, slender and located close to lateral face of prodorsum. Sensillus slightly fusiform, pectinate. Bothridium incorporated, not projecting. Notogaster circular with 14 pairs of setae. Epimeral setation 3-1-2-2. Four pairs of genital setae. Anal plates clearly triangular. Trochanter III and IV with obvious dorsal spur. Femoral carinae on legs I and II absent. All genua with bulgy ventral transversal ridge. Juveniles with slightly foveate centrodorsal plate.
Type species: Litoribates caelestis sp. nov.
description: Published as part of Pfingstl, Tobias & Schatz, Heinrich, 2017, New littoral mite species (Acari, Oribatida, Fortuyniidae) from the Galápagos archipelago, with ecological and zoogeographical considerations, pp. 39-64 in Zootaxa 4244 (1) on page 49, DOI: 10.11646/zootaxa.4244.1.2, http://zenodo.org/record/400419
Cerradomys langguthi
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Cricetidae
Cerradomys
Cerradomys langguthi

description: Cerradomys langguthi
Karyotype: 2n = 50 and FN = 56. Autosomal complement: four metacentric pairs (one large and three medium to small), and 20 acrocentric pairs (three large and 17 medium to small). Sex chromosomes: X, a medium acrocentric; Y, a small acrocentric. Variation in diploid number (2n = 46, 2n = 48 and 2n = 49) was reported due to multiple centric fusions affecting acrocentric pairs, and fundamental number and sex chromosome morphology remain the same (Maia & Hulak 1981, pp. 35, Fig. 1; Geise & Pereira 2008; Percequillo et al. 2008; Geise et al. 2010). These variations in diploid number occurs sympatrically on specimens collected in Pernambuco, state of Brazil (Table 2, Fig. 2). C-banding metaphases exhibited blocks of constitutive heterochromatin on the pericentromeric region of all autosomes. The X chromosome presented pericentromeric heterochromatic blocks. The Y chromosome presented a large heterochromatic block on its long arm. G-banding was also performed (Maia & Hulak 1981).
Another karyotype for C. langguthi was reported by Nagamachi et al. (2013, pp. 8, Fig. 5) for a specimen from Agropalma Farm, Moju, Pará, Brazil. Karyotype: 2n = 46 and FN = 62. Autosomal complement: nine biarmed pairs (four large and five medium to small decreasing in size), and 13 acrocentric pairs medium to small decreasing in size. Sex chromosomes: X, a large acrocentric; Y, a small acrocentric. C-banding metaphases exhibited blocks of constitutive heterochromatin on the pericentromeric region of all autosomes, with the exception of one large metacentric pair. One medium acrocentric pair presented a heterochromatic band on proximal region of its long arm. The X chromosome presented a large heterochromatic block on the proximal region and a small band near to the distal region. The Y chromosome was almost entirely heterochromatic except for the proximal region. G-banding was also performed. FISH with telomeric sequences revealed signals at the ends of all chromosome arms, and additional telomeric sequences were found in three biarmed pairs: one pair with five interstitial telomeric sequence (one on the short arm and four on the long arm), and the others with one interstitial telomeric sequence on the centromeric regions. The authors established maps of chromosomal homology between C. langguthi and Hylaeamys megacephalus using whole chromosome probes of H. megacephalus. The results showed a huge genomic reorganization between the karyotype of these two species.
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 8, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Gahrliepia (Gahrliepia) dupliseta Traub and Morrow 1955
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Trombiculidae
Gahrliepia
Gahrliepia dupliseta

description: Gahrliepia (Gahrliepia) dupliseta Traub and Morrow, 1955:
ORI
Gahrliepia (Scrobiculata) dupliseta, Vercammen-Grandjean 1968c [ornata group]
Duplisetia (Duplisetia) dupliseta, Wen 1999 a
Gahrliepia dupliseta, Fernandes & Kulkarni 2003
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 22, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
MMP: An Object-Oriented Multi-Machine Parser Generator
Creators: name: Lu, Youyuan
Publisher: name: ETH Zurich
Year: 2022

description: When compared with the manual labor of crafting parsers, most parser generators
currently available are not flexible and powerful enough. They prohibit
the free combination of various parsing algorithms/machines, restrict the form of
grammar rules, and provide limited support for semantic actions and nonterminals’
fields. In this thesis, we present a parser generator Multi-Machine Parsing
(MMP) that solves these three problems. MMP features modular design, regular
expression (regex) rules, and object-oriented nonterminals, thus providing users
with much more freedom to compose their grammars and to tune the performance
of the generated parsers.
Additional file 6: Figure S5. of
                     ZFAS1: a long noncoding RNA associated with ribosomes in breast cancer cells
Creators: name: Herah Hansji
name: Leung, Euphemia
name: Baguley, Bruce
name: Finlay, Graeme
name: Cameron-Smith, David
name: Vandre Figueiredo
name: Askarian-Amiri, Marjan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Cancer
subject: Plant Biology

description: ZFAS1 has a 5’TOP sequence and may resist NMD. (A) Sequence of the 5’ region of human ZFAS1 as determined by 5’RACE aligned against ZFAS1, variant 4 from NCBI136/hg138 assembly. (B) Effect of serum starvation on the abundance of ZFAS1 and GAS5. Different cell lines were used to examine the effect of serum starvation for up to 72 h. qPCR was performed using total RNA extracted from each cell to measure the level of ZFAS1 and GAS5. 18S and 28S rRNA transcripts were used to normalise the expression of ZFAS1 and GAS5. Fold change relative to time 0 is shown on the Y axis, and treatment time (h) shown on the X axis. Error bars are SEM of three biological replicates, p values were calculated using Student’s t test. (PDF 471 kb)
Efficiently Scheduling Remote And Local Resources in ML Data Input Pipeline
Creators: name: Li, Muyu
Publisher: name: ETH Zurich
Year: 2022

description: Machine Learning model training is costly and time-consuming. According
to recent research, the bottleneck of the model training process lies in the input
data processing stages. tf.data.service, as well as its extension Cachew,
tries to solve this problem by disaggregating the input pipelines from the
model and moving them onto the cloud. This successfully removes the bottleneck
from the input pipeline. However, such an approach introduces extra
cost from the cloud service and fails to fully utilize the computation resources
on the host machine. In this thesis, we discuss two different approaches to
solving this problem: utilizing local workers and pipeline splitting, and propose
a final policy integrating both of them to minimize the extra cost while
keeping the pipeline fast enough. This policy is implemented upon v2.8
of tf.data and tested on different input pipelines, seeing a 9% to 26% cost
saving compared to Cachew’s autoscaling policy.
Additional file 10: Figure S8. of
                     ZFAS1: a long noncoding RNA associated with ribosomes in breast cancer cells
Creators: name: Herah Hansji
name: Leung, Euphemia
name: Baguley, Bruce
name: Finlay, Graeme
name: Cameron-Smith, David
name: Vandre Figueiredo
name: Askarian-Amiri, Marjan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: ZFAS1 is associated with actively translating ribosomes in an isoform-independent manner. (A) Polysome distribution of MDA-MB-468 cell lysates as shown in Fig.Â 3. Fractions from the top of the gradient to the bottom are shown from left to right on the X axis. Fractions were collected in 36 equal volumes, of which every third was used for RNA extraction, and cDNA synthesised for PCR. The presence of ZFAS1 expression was assessed using primers E1F3-E5R1, with GAPDH acting as a positive control. The presence of three bands confirms at least 4 out of five isoforms are present in each fraction. (PDF 1333 kb)
Additional file 5: Figure S4. of
                     ZFAS1: a long noncoding RNA associated with ribosomes in breast cancer cells
Creators: name: Herah Hansji
name: Leung, Euphemia
name: Baguley, Bruce
name: Finlay, Graeme
name: Cameron-Smith, David
name: Vandre Figueiredo
name: Askarian-Amiri, Marjan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Plant Biology
subject: 60506 Virology

description: Effect of ZFAS1 knockdown on cell phenotype. (A) Proliferation rates of cells transfected with vectors expressing control (scrambled RNA) and ZFAS1-specific shRNA BC2 and BC3 as determined by SRB assay. Error bars are SEM, n =2. (B) Size of cells expressing control (scrambled) and ZFAS1-specific shRNA BC2 was determined using a Coulter electronic particle counter. (C) Nascent protein synthesis as quantified by uptake of the fluorescent amino acid analogue, Click-iT® AHA, in ZFAS1 knockdown BC2 and scrambled control cells, n = 2. (PDF 451 kb)
Additional file 4: Table S1: of
                     ZFAS1: a long noncoding RNA associated with ribosomes in breast cancer cells
Creators: name: Herah Hansji
name: Leung, Euphemia
name: Baguley, Bruce
name: Finlay, Graeme
name: Cameron-Smith, David
name: Vandre Figueiredo
name: Askarian-Amiri, Marjan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Plant Biology

description: Correlation of ZFAS1 expression with that of randomly selected genes in human (i) non-tumour and (ii) breast cancer samples (TCGA data). (DOC 38 kb)
Additional file 11: Figure S9. of
                     ZFAS1: a long noncoding RNA associated with ribosomes in breast cancer cells
Creators: name: Herah Hansji
name: Leung, Euphemia
name: Baguley, Bruce
name: Finlay, Graeme
name: Cameron-Smith, David
name: Vandre Figueiredo
name: Askarian-Amiri, Marjan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Plant Biology

description: Genomic orientation of ZFAS1 and four shRNA used in these experiments. (PDF 127 kb)
Additional file 3: Figure S3. of
                     ZFAS1: a long noncoding RNA associated with ribosomes in breast cancer cells
Creators: name: Herah Hansji
name: Leung, Euphemia
name: Baguley, Bruce
name: Finlay, Graeme
name: Cameron-Smith, David
name: Vandre Figueiredo
name: Askarian-Amiri, Marjan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Plant Biology

description: Expression of ZFAS1 in breast cancer tissue derived from TCGA. (A) Expression of ZFAS1 in tumour and non-tumour samples. (B-K) Expression of concordantly regulated ribosomal protein genes in breast cancer and normal breast tissue (TCGA data). Correlation of the abundances of these gene transcripts to that of ZFAS1 is plotted in the right panels for normal breast tissue and breast cancer samples. Studentâ  s t test was used to determine the significance of difference in expression between tumour (T) and non-tumour (N) samples, *, **, *** represent p values of >0.05, >0.005 and >0.001 respectively. (PDF 596 kb)
Additional file 7: Figure S6. of
                     ZFAS1: a long noncoding RNA associated with ribosomes in breast cancer cells
Creators: name: Herah Hansji
name: Leung, Euphemia
name: Baguley, Bruce
name: Finlay, Graeme
name: Cameron-Smith, David
name: Vandre Figueiredo
name: Askarian-Amiri, Marjan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Plant Biology

description: Effect of puromycin, a translational inhibitor, on the abundance of ZFAS1 and GAS5. Relative expression of genes was measured by qPCR using total RNA extracted from each cell. 18S and 28S rRNA transcripts were used to normalise the expression of ZFAS1 and GAS5. The Y axis represents the fold change relative to time 0. The X axis shows treatment time. Error bars are SEM of three biological replicates, p values were calculated using Studentâ  s t test. (PDF 172 kb)
Cerradomys maracajuensis
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Cricetidae
Cerradomys
Cerradomys maracajuensis

description: Cerradomys maracajuensis.
Karyotype: 2n = 58 and FN = 60. Autosomal complement: one medium subtelocentric pair, one small metacentric pair, and 26 acrocentric pairs large to small decreasing in size. Sex chromosomes: X, a large submetacentric; Y, a small metacentric (Langguth & Bonvicino 2002, pp. 291, Fig. 3C; Bonvicino et al. 2014).
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 9, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Castiarina Gory & Laporte 1838
Creators: name: Hutchinson, Paul M.
name: Allsopp, Peter G.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Buprestidae
Castiarina

description: Castiarina Gory & Laporte, 1838
Stigmodera (Castiarina) Gory & Laporte, 1838: 22 (as Stigmodera 3rd Division). Type species: Stigmodera (Castiarina) pertii Gory & Laporte, 1838, subsequent designation by Barker 1979: 1.
Castiarina: Gardner 1989a: 340; Gardner 1989b: 170; International Commission on Zoological Nomenclature 1991: 74 (name conserved).
Polychroma Dejean, 1836: 79; International Commission on Zoological Nomenclature 1991: 74 (name suppressed).
Hypostigmodera Blackburn, 1892: 215; Gardner 1989a: 340 (syn.). Type species: Hypostigmodera variegata Blackburn, 1892, by monotypy.
Archaeozedes Obenberger, 1920: 164; Carter 1925: 231 (syn.). Type species: Archaeozedes strandi Obenberger, 1920 (= Castiarina versicolor (Gory & Laporte, 1836)), by monotypy.
Petersonia Hawkeswood, 2007: 1; Bellamy & Nylander 2007: 423 (syn.). Type species: Castiarina shelleybarkeri Nylander, 2006, by original designation.
description: Published as part of Hutchinson, Paul M. & Allsopp, Peter G., 2022, Two new species of Castiarina Gory and Laporte, 1838 (Coleoptera: Buprestidae: Stigmoderini) from Australia, pp. 485-495 in Zootaxa 5099 (4) on page 486, DOI: 10.11646/zootaxa.5099.4.4, http://zenodo.org/record/6092078
Additional file 12: Table S3. of
                     ZFAS1: a long noncoding RNA associated with ribosomes in breast cancer cells
Creators: name: Herah Hansji
name: Leung, Euphemia
name: Baguley, Bruce
name: Finlay, Graeme
name: Cameron-Smith, David
name: Vandre Figueiredo
name: Askarian-Amiri, Marjan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Plant Biology
subject: 60506 Virology

description: List of sequences of shRNA used to target exon 5 of ZFAS1. (DOC 27 kb)
Additional file 2: Figure S2. of
                     ZFAS1: a long noncoding RNA associated with ribosomes in breast cancer cells
Creators: name: Herah Hansji
name: Leung, Euphemia
name: Baguley, Bruce
name: Finlay, Graeme
name: Cameron-Smith, David
name: Vandre Figueiredo
name: Askarian-Amiri, Marjan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Plant Biology

description: Analyses of ZFAS1 in breast cancer samples derived from TCGA. A(i) Expression of ZFAS1 in normal breast (n = 113) and breast cancer (n = 1069) samples. (ii) Expression of ZFAS1 by tumour subtype based on PAM50 classification. ZFAS1 is more highly expressed in normal tissues compared to basal and HER2 breast cancer subtypes. (iii) Expression of ZFAS1 in ER+ (n = 601) and ER- (n = 179) breast cancer samples. Unpaired Student’s t-test showed that ZFAS1 was differentially expressed according to estrogen status. (B) Kaplan-Meier plot generated from http://www.oncolnc.org/ of TCGA breast cancer data set. High expressers are those 50 % of patients with the highest ZFAS1 expression, and low expressers are those 50 % of patients with the lowest ZFAS1 expression. High expressers of ZFAS1 do not show altered survival up to 6000 days. (C) Gene expression of candidate ribosomal proteins by tumour subtype based on PAM50 classification. Unpaired student’s t-test relative to normal tissue samples was used to calculate P values. (PDF 475 kb)