cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Pseudocapillaria (Ichthyocapillaria) salvelini (Polyanski, 1952) Moravec 1982
Creators: name: Arai, Hisao P.
name: Smith, John W.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Nematoda
Adenophorea
Trichocephalida
Capillariidae
Pseudocapillaria
Pseudocapillaria salvelini

description: Pseudocapillaria (Ichthyocapillaria) salvelini (Polyanski, 1952) Moravec, 1982
Synonym: Capillaria salvelini Polyanski, 1952
Description (after Moravec 2001). With characteristics of the genus.
Males: Body length 6.17–9.11, maximum width 0.060–0.84. Muscular oesophagus 0.285–0.330, 26–35
stichocytes. Nerve ring 0.087–0.099 from anterior end. Spicule smooth, well sclerotized, 0.405–0.636 long, 0.009–
0.012 wide. Tail 0.018–0.027 long, rounded, with caudal bursa (Fig. 23 B).
Females: Gravid worms 7.15–13.46 long, maximum width 0.054–0.095. Muscular oesophagus 0.300–0.393
long. Nerve ring 0.095–0.102 from anterior extremity. Vulva 0.030–0.081 behind oesophago-intestinal junction.
Eggs in one row near vulva (Fig. 23 C), several rows distally. Mature eggs 0.060–0.075 x 0.027–0.030, polar plugs
non–protruding (Fig. 23 D). Anus subterminal. Tail 0.009–0.015 long.
Site: alimentary tract
Hosts: Coregonus clupeaformis (5, 12, 22); Cottus asper (14); Oncorhynchus kisutch (11, 14, 16, 17, 18, 21); Oncorhynchus mykiss (22); Osmerus mordax (6, 14); Prosopium cylindraceum (5, 11, 22); Salmo salar (2, 6, 7, 8, 9 10, 14, 15, 17, 24, 25); Salvelinus alpinus (5, 23); Salvelinus fontinalis (3, 4, 5, 6, 12, 19, 20, 24); Salvelinus fontinalis x Salvelinus namaycush (13); Salvelinus malma (18); Salvelinus namaycush (5, 11, 12, 14, 17); Thymallus arcticus (11)
Distribution: British Columbia, Labrador, New Brunswick, Newfoundland, Northwest Territories, Nova Scotia, Ontario, Quebec, Yukon Territory
Records: 1. Pippy 1967 (NB, NL); 2. Pippy 1969 (NL, NB, NS); 3. Threlfall & Hanek 1969 (NF); 4. Threlfall & Hanek 1970c (NF); 5. Hicks & Threlfall 1973 (LB); 6. Hanek & Molnar 1974 (QC); 7. Hare & Burt 1975a (NB); 8. Hare & Burt 1975b (NB); 9. Hare 1975 (NB); 10. Hare & Burt 1976 (NB); 11. Arthur et al. 1976 (YT); 12. Chinniah & Threlfall 1978 (LB); 13. Dechtiar & Berst 1978 (ON); 14. Moravec 1980 (BC, NF, ON, YT); 15. Pippy 1980 (NB, NL, NT); 16. Anon. 1981 (BC); 17. Bell & Beverley-Burton 1981 (BC, NB, NT); 18. Anon. 1984 (BC); 19. Frimeth 1987a (NB); 20. Frimeth 1987b (NB); 21. Dechtiar & Christie 1988 (ON); 22. Dechtiar & Lawrie 1988 (ON); 23. Bouillon & Dempson 1989 (LB); 24. Marcogliese & Cone 1991a (LB, NB, NL, QC); 25. Marcogliese & Cone 1991b (NF)
description: Published as part of Arai, Hisao P. & Smith, John W., 2016, Guide to the Parasites of Fishes of Canada Part V: Nematoda, pp. 1-274 in Zootaxa 4185 (1) on page 32, DOI: 10.11646/zootaxa.4185.1.1, http://zenodo.org/record/165530
Bulk Rashba Effect in Multiferroics: a theoretical prediction for BiCoO3
Creators: name: Yamauchi, Kunihiko
name: Barone, Paolo
name: Picozzi, Silvia
Publisher: name: arXiv
Year: 2019
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We put forward the concept of a bulk Rashba effect emerging in a multiferroic material, such as an antiferromagnetic system with a polar crystal structure. According to symmetry considerations, while time-reversal and space-inversion symmetries are both broken, there exist specific spin flipping operations that relate opposite spin sites in the magnetic crystal structure. As a consequence, at certain high-symmetry points in the momentum space, the magnetic point group allows the spin angular momentum to be locked to the linear momentum, a typical feature of the Rashba effect. In such a case, spin-splitting effects induced by spin-orbit coupling can arise, similar to what happens in non-magnetic Rashba systems. As a prototypical example, ab-initio calculations of antiferromagnetic BiCoO3 in the polar structure reveal that a large Rashba-like band- and spin- splitting occurs at the conduction band bottom, having a large weight from Bi-p orbital states. Moreover, we show that the spin texture of such a multiferroic can be modulated by applying a magnetic field. In particular, an external in-plane magnetic field is predicted not only to induce spin-canting, but also a distortion of the energy isocontours and a shift of the spin-vortex (centered on the high-symmetry point and characteristic of Rashba effect) along a direction perpendicular to the applied field.
description: 6 pages, 5 figures, submitted for publication
Validation of an algorithm for automated classification of migraine and tension-type headache attacks in an electronic headache diary
Creators: name: Roesch, Aaron
name: Dahlem, Markus A.
name: Neeb, Lars
name: Kurth, Tobias
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: Headache
subject: Migraine
subject: Tension-type headache
subject: Classification
subject: App application
subject: Digital health
subject: Algorithm
subject: M-health
subject: E-diary
subject: M-sense
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Background: This study evaluates the accuracy of an automated classification tool of single attacks of the two major primary headache disorders migraine and tension-type headache used in an electronic headache diary. Methods: One hundred two randomly selected reported headache attacks from an electronic headache-diary of patients using the medical app M-sense were classified by both a neurologist with specialisation in headache medicine and an algorithm, constructed based on the ICHD-3 criteria for migraine and tension-type headache. The level of agreement between the headache specialist and the algorithm was compared by using a kappa statistic. Cases of disagreement were analysed in a disagreement validity assessment. Result: The neurologist and the algorithm classified migraines with aura (MA), migraines without aura (MO), tension-type headaches (TTH) and non-migraine or non-TTH events. Of the 102 headache reports, 86 cases were fully agreed on, and 16 cases not, making the level of agreement unweighted kappa 0.74 and representing a substantial level of agreement. Most cases of disagreement (12 out of 16) were due to inadvertent mistakes of the neurologist identified in the disagreement validity assessment. The second most common reason (3 out of 16) was insufficient information for classification by the neurologist. Conclusions: The substantial level of agreement indicates that the classification tool is a valuable instrument for automated evaluation of electronic headache diaries, which can thereby support the diagnostic and therapeutic clinical processes. Based on this study’s results, additional diagnostic functionalities of primary headache management apps can be implemented. Finally, future research can use this classification algorithm for large scale database analysis for epidemiological studies.
Singularity formation for rotational gas dynamics
Creators: name: Rozanova, Olga S.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Mathematical Physics (math-ph)
subject: Analysis of PDEs (math.AP)
subject: FOS: Physical sciences
subject: FOS: Mathematics
subject: 76U05 35L60 35L67

description: The Cauchy problem for the system of equations of two-dimensional rotational gas dynamics is considered. It is assumed that the Cauchy data are a smooth compact perturbation of a constant state. Integral conditions for the data sufficient for the loss of smoothness by a solution within a finite time are found. We analyze the possibility of fulfilling these conditions and compare them with the criterion of singularity formation, known for rotational gas dynamics without pressure.
description: 15 pages, 3 figures
Supplementary Data from Flexibility in reaction time analysis: many roads to a false positive?
Creators: name: Fernández, Luis Morís
name: Vadillo, Miguel A.
Publisher: name: The Royal Society
Year: 2020
Subjects: subject: Neuroscience
subject: 179999 Psychology and Cognitive Sciences not elsewhere classified
subject: FOS: Psychology

description: Additional data and figures.
PhysicsGP: A Genetic Programming Approach to Event Selection
Creators: name: Cranmer, Kyle
name: Bowman, R. Sean
Publisher: name: arXiv
Year: 2004
Subjects: subject: Data Analysis, Statistics and Probability (physics.data-an)
subject: FOS: Physical sciences

description: We present a novel multivariate classification technique based on Genetic Programming. The technique is distinct from Genetic Algorithms and offers several advantages compared to Neural Networks and Support Vector Machines. The technique optimizes a set of human-readable classifiers with respect to some user-defined performance measure. We calculate the Vapnik-Chervonenkis dimension of this class of learning machines and consider a practical example: the search for the Standard Model Higgs Boson at the LHC. The resulting classifier is very fast to evaluate, human-readable, and easily portable. The software may be downloaded at: http://cern.ch/~cranmer/PhysicsGP.html
description: 16 pages 9 figures, 1 table. Submitted to Comput. Phys. Commun
Chiral spin structure of electron gas in systems with magnetic skyrmions
Creators: name: Yung, L. A.
name: Denisov, K. S.
name: Rozhansky, I. V.
name: Averkiev, N. S.
name: Lahderanta, E.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The theoretical study considers chiral spin texture induced in a 2D electron gas (2DEG) by magnetic skyrmions. We calculate the electron gas spin density as a linear response to the exchange interaction between the 2DEG and the magnetization field of a magnetic skyrmion. Two physically distinct regimes occur. When the size of the skyrmion is larger than the inverse Fermi wavevector $k_F^{-1}$, the spin density response follows the magnetization profile of the skyrmion. In the opposite case of a small skyrmion the emerging spin structure of 2DEG has a characteristic size of $k_F^{-1}$ and the response becomes non-local, it can be viewed as chiral Friedel oscillations. At that, the emerging spin structure of the oscillations appears to be more complex than that of the skyrmion itself.
description: 6 pages, 7 figures
Submillisievert chest CT in patients with COVID-19 - experiences of a German Level-I center
Creators: name: Hamper, Christina M.
name: Fleckenstein, Florian Nima
name: Büttner, Laura
name: Hamm, Bernd
name: Thieme, Nadine
name: Thiess, Hans-Martin
name: Scholz, Oriane
name: Döllinger, Felix
name: Böning, Georg
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: COVID-19
subject: Low-dose chest CT
subject: Dose reduction
subject: SARS-CoV2
subject: German Level-I center
subject: Coronavirus
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Purpose: Computed tomography (CT) is used for initial diagnosis and therapy monitoring of patients with coronavirus disease 2019 (COVID-19). As patients of all ages are affected, radiation dose is a concern. While follow-up CT examinations lead to high cumulative radiation doses, the ALARA principle states that the applied dose should be as low as possible while maintaining adequate image quality. The aim of this study was to evaluate parameter settings for two commonly used CT scanners to ensure sufficient image quality/diagnostic confidence at a submillisievert dose. Materials and methods: We retrospectively analyzed 36 proven COVID-19 cases examined on two different scanners. Image quality was evaluated objectively as signal-to-noise ratio (SNR)/contrast-to-noise ratio (CNR) measurement and subjectively by two experienced, independent readers using 3-point Likert scales. CT dose index volume (CTDIvol) and dose-length product (DLP) were extracted from dose reports, and effective dose was calculated. Results: With the tested parameter settings we achieved effective doses below 1 mSv (median 0.5 mSv, IQR: 0.2 mSv, range: 0.3−0.9 mSv) in all 36 patients. Thirty-four patients had typical COVID-19 findings. Both readers were confident regarding the typical COVID-19 CT-characteristics in all cases (3 ± 0). Objective image quality parameters were: SNRnormal lung: 17.0 ± 5.9, CNRGGO/normal lung: 7.5 ± 5.0, and CNRconsolidation/normal lung: 15.3 ± 6.1. Conclusion: With the tested parameters, we achieved applied doses in the submillisievert range, on two different CT scanners without sacrificing diagnostic confidence regarding COVID-19 findings.
New Quantum Phase of the Universe before Inflation and its Cosmological and Dark Energy Implications
Creators: name: Sanchez, Norma G.
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The physical history of the Universe is completed by including the quantum planckian and trans-planckian phase before Inflation in the Standard Model of the Universe in agreement with observations. A new quantum precursor phase appears beyond the Planck scale. We extend de Sitter universe to the quantum domain: classical-quantum de Sitter duality. As a result: The classical and quantum dual de Sitter Temperatures and Entropies are naturally included, and the different (classical, semiclassical, quantum planckian and super-planckian) de Sitter regimes characterized in a precise and unifying way. Relevant cosmological examples as Inflation and Dark Energy are described. This allows to find in a simple and consistent way: Quantum Inflationary spectra and their CMB observables, including in particular the classical known Inflation spectra and the quantum corrections to them. A unifying picture for the Universe epochs and their quantum precursors emerges with the cosmological constant as the vacuum energy, entropy and temperature of the Universe, shedding light into the cosmological constant problem (Abridged).
description: 47 pages, 1 figure
Effect of Sr substitution on superconductivity in Hg2(Ba1-ySry)2YCu2O8-d (part2): bond valence sum approach of the hole distribution
Creators: name: Toulemonde, P.
name: Odier, P.
name: Bordet, P.
name: Floch, S. Le
name: Suard, E.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: The effects of Sr substitution on superconductivity, and more particulary the changes induced in the hole doping mechanism, were investigated in Hg2(Ba1-ySry)2YCu2O8-d by a "bond valence sum" analysis with Sr content from y = 0.0 to y = 1.0. A comparison with CuBa2YCu2O7-d and Cu2Ba2YCu2O8 systems suggests a possible explanation of the Tc enhancement from 0 K for y = 0.0 to 42 K for y = 1.0. The charge distribution among atoms of the unit cell was determined from the refined structure, for y = 0.0 to 1.0. It shows a charge transfer to the superconducting CuO2 plane via two doping channels pi(1) and pi(2), i.e. through O2(apical)-Cu and Ba/Sr-O1 bonds respectively.
description: 13 pages, 5 figures, accepted for publication in Journal of Physics: Condensed Matter
Atomic-resolution cryo-STEM across continuously variable temperature
Creators: name: Goodge, Berit H.
name: Bianco, Elisabeth
name: Kourkoutis, Henny W. Zandbergen Lena F.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Applied Physics (physics.app-ph)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Atomic-resolution cryogenic scanning transmission electron microscopy (cryo-STEM) has provided a path to probing the microscopic nature of select low-temperature phases in quantum materials. Expanding cryo-STEM techniques to broadly tunable temperatures will give access to the rich temperature-dependent phase diagrams of these materials. With existing cryo-holders, however, variations in sample temperature significantly disrupt the thermal equilibrium of the system, resulting in large-scale sample drift. The ability to tune temperature without negatively impacting the overall instrument stability is crucial, particularly for high-resolution experiments. Here, we test a new side-entry continuously variable temperature dual-tilt cryo-holder which integrates liquid nitrogen cooling with a 6-pin MEMS sample heater to overcome some of these experimental challenges. We measure consistently low drift rates of 0.3-0.4 Angstrom/s and demonstrate atomic-resolution cryo-STEM imaging across a continuously variable temperature range from ~100 K to well above room temperature. We conduct additional drift stability measurements across several commercial sample stages and discuss implications for further developments of ultra-stable, flexible cryo-stages.
Closed-loop vagus nerve stimulation. Patient-tailored therapy or undirected treatment?
Creators: name: Spindler, Philipp
name: Vajkoczy, Peter
name: Schneider, Ulf Cristoph
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: AspireSR(®)
subject: Automatic stimulation (AutoStim)
subject: Cardiac-based seizure detection (CBSD)
subject: Pharmacoresistant epilepsy
subject: Vagal nerve stimulation (VNS)
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Background: In multi-drug-resistant epilepsy vagus nerve stimulation (VNS) is an efficacious additional treatment to reduce seizure frequency and severity. A recently developed cardiac-based seizure detection (CBSD) algorithm triggers automate stimulation (AutoStim) upon heart rate increases of at least 20%. Yet, long term sensitivity and specificity of the CBSD-algorithm remain unclear. We present a case series of 15 adult patients with epilepsy with AutoStim VNS therapy. Methods: We reviewed CBSD-settings, operating hours and battery status of the devices. Percentage of AutoStim was assessed in comparison to continuous but intermittent stimulation. If seizure diaries were available, we verified whether a high rate of AutoStim was present during the documented seizures. Results: We reviewed 15 patients with a mean age of 34 years (±11y). Mean duration since implantation was 47 months (±12 m). Of 1296 (±686) continuous intermittent stimulations per week, 4.8 (±3.9)% were AutoStim. Proportion of AutoStim varied substantially. While 9 patients had a mean of 1.5% (±1.4%), 6 patients had a significantly higher proportion of AutoStim 9.0% (±1.6%). Seizure-frequency was higher in patients with higher AutoStim frequency. Adverse events occurred in none of the patients. Conclusion: We provide long-term results for sensitivity and specificity of the CBSD algorithm. While sensitivity seems to be high, we presume specificity to be poor. An extremely high number of AutoStim is supposedly false-positive. Yet, treatment was well tolerated by the patients without any adverse events, despite the high number of AutoStim. CBSD is a promising development, yet the algorithm should be revised to provide a better specificity.
Additional file 3 of Temporal trends in molecular markers of drug resistance in Plasmodium falciparum in human blood and profiles of corresponding resistant markers in mosquito oocysts in Asembo, western Kenya
Creators: name: Zhou, Zhiyong
name: Gimnig, John E.
name: Sergent, Sheila B.
name: Liu, Ying
name: Abong’o, Bernard
name: Otieno, Kephas
name: Chebore, Winnie
name: Shah, Monica P.
name: Williamson, John
name: ter Kuile, Feiko O.
name: Hamel, Mary J.
name: Kariuki, Simon
name: Desai, Meghna
name: Samuels, Aaron M.
name: Walker, Edward D.
name: Shi, Ya Ping
Publisher: name: figshare
Year: 2022
Subjects: subject: Physical Sciences not elsewhere classified
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Additional file 3: Table S3. Comparison in prevalence of drug resistance SNPs of parasites between mosquitoes and human blood samples collected by three categories of distances.
Clump Development by the Nickel Bubble Effect in Supernovae
Creators: name: Wang, Chih-Yueh
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We used one-dimensional radiative-transport radiation hydrodynamical (RHD) simulations to investigate the formation of clumping in freely-expanding supernova ejecta due to the radioactive heating from the Ni56 -> Co56 -> Fe56 decay sequence. The heating gives rise to an inflated Nickel bubble, which induces a forward shock that compresses the outer ambient gas into a shell. The radiative energy deposited by the radioactivity leaks out across the shock by radiative diffusion, and we investigate its effect on the evolution of the ejecta structure. Compared to the hydrodynamical adiabatic approximation with gamma =4/3, the preshock gas becomes accelerated by the radiation outflow. The shock is thus weakened and the shell becomes broader and less dense. The thickness of the shell takes up
description: accepted by ApJ
Acromyrmex coronatus subsp. globoculis Kempf 1972
Creators: name: DE ALBUQUERQUE, EMÍLIA ZOPPAS
name: PRADO, LÍVIA PIRES DO
name: ANDRADE-SILVA, JOUDELLYS
name: DE SIQUEIRA, EMELY LAIARA SILVA
name: DA SILVA SAMPAIO, KELLY LIANE
name: ALVES, DIEGO
name: BRANDÃO, CARLOS ROBERTO FERREIRA
name: ANDRADE, PALOMA L.
name: FEITOSA, RODRIGO MACHADO
name: DE AZEVEDO KOCH, ELMO BORGES
name: DELABIE, JACQUES HUBERT CHARLES
name: FERNANDES, ITANNA
name: BACCARO, FABRÍCIO BEGGIATO
name: SOUZA, JORGE LUIZ PEREIRA
name: ALMEIDA, RONY PETERSON SANTOS
name: SILVA, ROGÉRIO R.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Acromyrmex
Acromyrmex coronatus
Acromyrmex coronatus globoculis kempf, 1972

description: Acromyrmex coronatus globoculis Kempf, 1972. Municipality unavailable [Forel, 1916].
 Acromyrmex hystrix (Latreille, 1802). Municipality unavailable [ANTWEB; Kempf, 1972c; Dáttilo et al., 2010]; Altamira [MZSP]; Belém [ANTWEB; MPEG; MZSP; Santschi, 1939; Gonçalves, 1961; Kempf, 1970; Kempf, 1976]; Chaves [MZSP]; Conceição do Araguaia [MPEG]; Igarapé-Açu [Gonçalves, 1961]; Irituia [MZSP; Gonçalves, 1961]; Óbidos [Gonçalves, 1961]; Portel [Overal et al., 1997; Harada, 2016].
 Acromyrmex landolti (Forel, 1885).Almeirim [MZSP; Gonçalves, 1961]; Itaituba [MPEG]; Marapanim [Gonçalves, 1961]; Oriximiná [MZSP].
 Acromyrmex laticeps (Emery, 1905). Belém [MPEG]; Paragominas [ANTWEB; Solar et al., 2016b]; Santa Bárbara do Pará [MPEG]; Soure [MPEG].
description: Published as part of DE ALBUQUERQUE, EMÍLIA ZOPPAS, PRADO, LÍVIA PIRES DO, ANDRADE-SILVA, JOUDELLYS, DE SIQUEIRA, EMELY LAIARA SILVA, DA SILVA SAMPAIO, KELLY LIANE, ALVES, DIEGO, BRANDÃO, CARLOS ROBERTO FERREIRA, ANDRADE, PALOMA L., FEITOSA, RODRIGO MACHADO, DE AZEVEDO KOCH, ELMO BORGES, DELABIE, JACQUES HUBERT CHARLES, FERNANDES, ITANNA, BACCARO, FABRÍCIO BEGGIATO, SOUZA, JORGE LUIZ PEREIRA, ALMEIDA, RONY PETERSON SANTOS & SILVA, ROGÉRIO R., 2021, Ants of the State of Pará, Brazil: a historical and comprehensive dataset of a key biodiversity hotspot in the Amazon Basin, pp. 1-83 in Zootaxa 5001 (1) on page 36, DOI: 10.11646/zootaxa.5001.1.1, http://zenodo.org/record/5122523
MicroRNA Profiling in Oesophageal Adenocarcinoma Cell Lines and Patient Serum Samples Reveals a Role for miR-451a in Radiation Resistance
Creators: name: Butz, Frederike
name: Eichelmann, Ann-Kathrin
name: Mayne, George C.
name: Wang, Tingting
name: Bastian, Isabell
name: Chiam, Karen
name: Marri, Shashikanth
name: Sykes, Pamela J.
name: Wijnhoven, Bas P.
name: Toxopeus, Eelke
name: Michael, Michael Z.
name: Karapetis, Christos S.
name: Hummel, Richard
name: Watson, David I.
name: Hussey, Damian J.
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: microRNA
subject: miRNA
subject: oesophageal adenocarcinoma
subject: biomarkers
subject: chemoradiotherapy
subject: resistance
subject: miR-451a
subject: extracellular vesicles
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Many patients with Oesophageal Adenocarcinoma (OAC) do not benefit from chemoradiotherapy treatment due to therapy resistance. To better understand the mechanisms involved in resistance and to find potential biomarkers, we investigated the association of microRNAs, which regulate gene expression, with the response to individual treatments, focusing on radiation. Intrinsic radiation resistance and chemotherapy drug resistance were assessed in eight OAC cell lines, and miRNA expression profiling was performed via TaqMan OpenArray qPCR. miRNAs discovered were either uniquely associated with resistance to radiation, cisplatin, or 5-FU, or were common to two or all three of the treatments. Target mRNA pathway analyses indicated several potential mechanisms of treatment resistance. miRNAs associated with the in vitro treatment responses were then investigated for association with pathologic response to neoadjuvant chemoradiotherapy (nCRT) in pre-treatment serums of patients with OAC. miR-451a was associated uniquely with resistance to radiation treatment in the cell lines, and with the response to nCRT in patient serums. Inhibition of miR-451a in the radiation resistant OAC cell line OE19 increased radiosensitivity (Survival Fraction 73% vs. 87%, p = 0.0003), and altered RNA expression. Pathway analysis of effected small non-coding RNAs and corresponding mRNA targets suggest potential mechanisms of radiation resistance in OAC.
Diagnosing the Stellar Population and Tidal Structure of the Blanco1 Star Cluster
Creators: name: Zhang, Yu
name: Tang, Shih-Yun
name: Chen, W. P.
name: Pang, Xiaoying
name: Liu, J. Z.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We present the stellar population, using {\it Gaia}\,DR2 parallax, kinematics, and photometry, of the young ($\sim 100$~Myr), nearby ($\sim 230$~pc) open cluster, Blanco1. A total of 644 member candidates are identified via the unsupervised machine learning method \textsc{StarGO} to find the clustering in the 5-dimensional position and proper motion parameter ($X$, $Y$, $Z$, $μ_α\cosδ$, $μ_δ$) space. Within the tidal radius of $10.0 \pm 0.3$~pc, there are 488 member candidates, 3 times more than those outside. A leading tail and a trailing tail, each of 50--60~pc in the Galactic plane, are found for the first time for this cluster, with stars further from the cluster center streaming away faster, manifest stellar stripping. Blanco1 has a total detected mass of $285\pm32$~M$_\odot $ with a mass function consistent with a slope of $α=1.35\pm0.2$ in the sense of $dN/dm \propto m^{-α}$, in the mass range of 0.25--2.51~M$_\odot $, where $N$ is the number of members and $m$ is stellar mass. A Minimum Spanning Tree ($Λ_{\rm MSR}$) analysis shows the cluster to be moderately mass segregated among the most massive members ($\gtrsim 1.4$~M$_\odot$), suggesting an early stage of dynamical disintegration.
description: 16 pages, 13 figures, accepted by ApJ
Current Challenges in the Post-Transplant Care of Liver Transplant Recipients in Germany
Creators: name: Herzer, Kerstin
name: Sterneck, Martina
name: Welker, Martin-Walter
name: Nadalin, Silvio
name: Kirchner, Gabriele
name: Braun, Felix
name: Malessa, Christina
name: Herber, Adam
name: Pratschke, Johann
name: Weiss, Karl Heinz
name: Jaeckel, Elmar
name: Tacke, Frank
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: liver transplantation
subject: long-term outcome
subject: post-liver transplantation management
subject: liver transplantation center
subject: aftercare structures
subject: Germany
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Improving long-term patient and graft survival after liver transplantation (LT) remains a major challenge. Compared to the early phase after LT, long-term morbidity and mortality of the recipients not only depends on complications immediately related to the graft function, infections, or rejection, but also on medical factors such as de novo malignancies, metabolic disorders (e.g., new-onset diabetes, osteoporosis), psychiatric conditions (e.g., anxiety, depression), renal failure, and cardiovascular diseases. While a comprehensive post-transplant care at the LT center and the connected regional networks may improve outcome, there is currently no generally accepted standard to the post-transplant management of LT recipients in Germany. We therefore described the structure and standards of post-LT care by conducting a survey at 12 German LT centers including transplant hepatologists and surgeons. Aftercare structures and form of cost reimbursement considerably varied between LT centers across Germany. Further discussions and studies are required to define optimal structure and content of post-LT care systems, aiming at improving the long-term outcomes of LT recipients.
Supplementary figure 1: Two scenarios of green-brown imbalances. from Climate warming and trophic mismatches in terrestrial ecosystems: the green–brown imbalance hypothesis
Creators: name: Thakur, Madhav P.
Publisher: name: The Royal Society
Year: 2020
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Environmental Science
subject: Ecology

description: Anthropogenic climate change can give rise to trophic mismatches in food webs owing to differential responses of consumer and resource organisms. However, we know little about the community and ecosystem level consequences of trophic mismatches in food webs. Terrestrial food webs are broadly comprised of two types of food webs: green food webs aboveground and brown food webs belowground between which mass and energy flow mainly via plants. Here, I highlight that the extent of warming-induced trophic mismatches in green and brown food webs differ owing to a greater stasis in brown food webs, which could trigger an imbalance in mass and energy flow between the two food webs. I then discuss the consequences of green–brown imbalance on terrestrial ecosystems and propose research avenues that can help understand the relationships between food webs and ecosystem functions in a warmer world.
Pseudocapillaria (Pseudocapillaria) tomentosa (Dujardin, 1843) Moravec 1987
Creators: name: Arai, Hisao P.
name: Smith, John W.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Nematoda
Adenophorea
Trichocephalida
Capillariidae
Pseudocapillaria
Pseudocapillaria tomentosa

description: Pseudocapillaria (Pseudocapillaria) tomentosa (Dujardin, 1843) Moravec, 1987
Synonyms: Capillaria catostomi Pearse 1934; Hepaticola bakeri Mueller & Van Cleave, 1932 (partim); Capillaria bakeri (Mueller & Van Cleave, 1932) Freitas & Lent, 1935; Skrjabinocapillaria bakeri (Mueller & Van Cleave, 1932) Skryabin & Schikhobalova, 1954
Description (after Moravec 2001). With characteristics of the genus.
Males: Body length 3.95–7.18, maximum width 0.054–0.068. Muscular oesophagus 0.183–0.330 long. Nerve
ring 0.084–0.099 from anterior end. Spicule smooth, well sclerotized, 0.240–0.330 long (Fig. 24 A). Tail 0.015–
0.018 long, rounded. Caudal bursa absent (Fig. 24 B).
Females: Gravid worms 7.30–12.04 long, maximum width 0.068–0.108. Muscular oesophagus 0.258–0.321
long, nerve ring 0.090–0.096 from anterior end. Vulva usually a short distance, 0.030–0.066, behind oesophago–
intestinal junction (Fig. 24 C). Eggs in one row near vulva, several rows distally. Mature eggs 0.063–0.078 x 0.030–
0.039. Anus subterminal, tail 0.009–0.015 long.
Site: intestine
Hosts: Catostomus catostomus (1, 3); Catostomus commersonii (1, 4, 6, 7, 8); Catostomus macrocheilus (3); Coregonus clupeaformis (8); Cottus asper (3); Couesius plumbeus (3); Cyprinus carpio (8); Cyprinus carpio x Carassius auratus (8); Lota lota (1, 2, 5); Mylocheilus caurinus (3); Oncorhynchus clarkii (3); Oncorhynchus kisutch (3); Oncorhynchus mykiss (3); Prosopium williamsoni (3); Ptychocheilus oregonensis (3); Richardsonius balteatus (3); Salvelinus fontinalis (2, 3); Salvelinus malma (3)
Distribution: British Columbia, Ontario
Records: 1. Bangham 1941 (ON); 2. Bangham & Venard 1946 (ON); 3. Bangham & Adams 1954 (BC); 4. Bangham 1955 (ON); 5. Dechtiar 1972a (ON); 6. Bell & Beverley-Burton 1980 (ON); 7. Moravec 1980 (ON); 8. Bell & Beverley-Burton 1981 (ON)
description: Published as part of Arai, Hisao P. & Smith, John W., 2016, Guide to the Parasites of Fishes of Canada Part V: Nematoda, pp. 1-274 in Zootaxa 4185 (1) on page 32, DOI: 10.11646/zootaxa.4185.1.1, http://zenodo.org/record/165530
Auxiliary fields and hadron dynamics
Creators: name: Semay, Claude
name: Silvestre-Brac, Bernard
name: Narodetskii, Ilya M.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The relations existing between the auxiliary field (einbein field) formalism and the spinless Salpeter equation are studied in the case of two particles with the same mass, interacting via a confining potential. The problem of non-orthogonality for radial excited states in the auxiliary field formalism is discussed and found to be non-crucial. It is shown that the classical equations of motion of the rotating string model, derived from the QCD lagrangian, reduce exactly to the classical equations of motion of the phenomenological semirelativistic flux tube model, provided all auxiliary fields are eliminated correctly from the rotating string hamiltonian.
Outcomes of Liver Resections after Liver Transplantation at a High-Volume Hepatobiliary Center
Creators: name: Pohl, Julian M. O.
name: Raschzok, Nathanael
name: Eurich, Dennis
name: Pflüger, Michael
name: Wiering, Leke
name: Daneshgar, Assal
name: Dziodzio, Tomasz
name: Jara, Maximilian
name: Globke, Brigitta
name: Sauer, Igor M.
name: Biebl, Matthias
name: Lurje, Georg
name: Schöning, Wenzel
name: Schmelzle, Moritz
name: Tacke, Frank
name: Pratschke, Johann
name: Ritschl, Paul V.
name: Öllinger, Robert
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: liver transplantation
subject: liver resection
subject: hepatocellular carcinoma
subject: graft survival
subject: ischemic type biliary lesions
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Although more than one million liver transplantations have been carried out worldwide, the literature on liver resections in transplanted livers is scarce. We herein report a total number of fourteen patients, who underwent liver resection after liver transplantation (LT) between September 2004 and 2017. Hepatocellular carcinomas and biliary tree pathologies were the predominant indications for liver resection (n = 5 each); other indications were abscesses (n = 2), post-transplant lymphoproliferative disease (n = 1) and one benign tumor. Liver resection was performed at a median of 120 months (interquartile range (IQR): 56.5-199.25) after LT with a preoperative Model for End-Stage Liver Disease (MELD) score of 11 (IQR: 6.75-21). Severe complications greater than Clavien-Dindo Grade III occurred in 5 out of 14 patients (36%). We compared liver resection patients, who had a treatment option of retransplantation (ReLT), with actual ReLTs (excluding early graft failure or rejection, n = 44). Bearing in mind that late ReLT was carried out at a median of 117 months after first transplantation and a median of MELD of 32 (IQR: 17.5-37); three-year survival following liver resection after LT was similar to late ReLT (50.0% vs. 59.1%; p = 0.733). Compared to ReLT, liver resection after LT is a rare surgical procedure with significantly shorter hospital (mean 25, IQR: 8.75-49; p = 0.034) and ICU stays (mean 2, IQR: 1-8; p < 0.001), acceptable complications and survival rates.
Supplementary Figures and Tables from Molecular anatomy of the pre-primitive-streak chick embryo
Creators: name: Lee, Hyung Chul
name: Lu, Hui-Chun
name: Turmaine, Mark
name: Oliveira, Nidia M. M.
name: Youwen Yang
name: Almeida, Irene De
name: Stern, Claudio D.
Publisher: name: The Royal Society
Year: 2020
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Developmental Biology
subject: 60408 Genomics

description: The early stages of development of the chick embryo, leading to primitive streak formation (the start of gastrulation) have received renewed attention recently, especially for studies of the mechanisms of large-scale cell movements and those that position the primitive streak in the radial blastodisc. Over the long history of chick embryology, the terminology used to define different regions has been changing, making it difficult to relate studies to each other. To resolve this objectively requires precise definitions of the regions based on anatomical and functional criteria, along with a systematic molecular map that can be compared directly to the functional anatomy. Here, we undertake these tasks. We describe the characteristic cell morphologies (using Scanning Electron Microscopy and immunocytochemistry for cell polarity markers) in different regions and at successive stages. RNAseq was performed for 12 regions of the blastodisc, from which a set of putative regional markers was selected. These were studied in detail by in situ hybridization. Together this provides a comprehensive resource allowing the community to define the regions unambiguously and objectively. In addition to helping with future experimental design and interpretation, this resource will also be useful for evolutionary comparisons between different vertebrate species.
Existence of foliations on 4-manifolds
Creators: name: Scorpan, Alexandru
Publisher: name: arXiv
Year: 2003
Subjects: subject: Geometric Topology (math.GT)
subject: Differential Geometry (math.DG)
subject: FOS: Mathematics
subject: 57R30 (Primary); 57N13, 32Q60 (Secondary)

description: We present existence results for certain singular 2-dimensional foliations on 4-manifolds. The singularities can be chosen to be simple, e.g. the same as those that appear in Lefschetz pencils. There seems to be a wealth of such creatures on most 4-manifolds. In certain cases, one can prescribe surfaces to be transverse or be leaves of these foliations. The purpose of this paper is to offer objects, hoping for a future theory to be developed on them. For example, foliations that are taut might offer genus bounds for embedded surfaces (Kronheimer's conjecture).
description: Published by Algebraic and Geometric Topology at http://www.maths.warwick.ac.uk/agt/AGTVol3/agt-3-43.abs.html
Sensitivity and specificity of a Bayesian single trial analysis for time varying neural signals
Creators: name: Mohl, Jeff T.
name: Caruso, Valeria C.
name: Tokdar, Surya T.
name: Groh, Jennifer M.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Neurons and Cognition (q-bio.NC)
subject: FOS: Biological sciences

description: We recently reported the existence of fluctuations in neural signals that may permit neurons to code multiple simultaneous stimuli sequentially across time. This required deploying a novel statistical approach to permit investigation of neural activity at the scale of individual trials. Here we present tests using synthetic data to assess the sensitivity and specificity of this analysis. We fabricated datasets to match each of several potential response patterns derived from single-stimulus response distributions. In particular, we simulated dual stimulus trial spike counts that reflected fluctuating mixtures of the single stimulus spike counts, stable intermediate averages, single stimulus winner-take-all, or response distributions that were outside the range defined by the single stimulus responses (such as summation or suppression). We then assessed how well the analysis recovered the correct response pattern as a function of the number of simulated trials and the difference between the simulated responses to each "stimulus" alone. We found excellent recovery of the mixture, intermediate, and outside categories (>97% percent correct), and good recovery of the single/winner-take-all category (>90% correct) when the number of trials was >20 and the single-stimulus response rates were 50Hz and 20Hz respectively. Both larger numbers of trials and greater separation between the single stimulus firing rates improved categorization accuracy. These results provide a benchmark, and guidelines for data collection, for use of this method to investigate coding of multiple items at the individual-trial time scale.
description: Accepted for publication in Neurons, Behavior, Data analysis, and Theory
Blepharidatta Wheeler 1915
Creators: name: DE ALBUQUERQUE, EMÍLIA ZOPPAS
name: PRADO, LÍVIA PIRES DO
name: ANDRADE-SILVA, JOUDELLYS
name: DE SIQUEIRA, EMELY LAIARA SILVA
name: DA SILVA SAMPAIO, KELLY LIANE
name: ALVES, DIEGO
name: BRANDÃO, CARLOS ROBERTO FERREIRA
name: ANDRADE, PALOMA L.
name: FEITOSA, RODRIGO MACHADO
name: DE AZEVEDO KOCH, ELMO BORGES
name: DELABIE, JACQUES HUBERT CHARLES
name: FERNANDES, ITANNA
name: BACCARO, FABRÍCIO BEGGIATO
name: SOUZA, JORGE LUIZ PEREIRA
name: ALMEIDA, RONY PETERSON SANTOS
name: SILVA, ROGÉRIO R.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Blepharidatta

description: Blepharidatta Wheeler, 1915
 Blepharidatta brasiliensis Wheeler, 1915. Municipality unavailable [ANTWEB; da Silva, 2007; Pereira et al., 2014]; Almeirim [DZUP; Brandão et al., 2015]; Belém [MZSP; Kempf, 1972c; Harada & Araújo, 2002; Brandão et al., 2015; Ulysséa et al., 2015]; Chaves [Wheeler, 1915]; Itaituba [MPEG]; Melgaço [INPA; MPEG; Harada & Araújo, 2002]; Oriximiná [CPDC; MZSP; Majer & Delabie, 1994; Harada & Araújo, 2002; Brandão et al., 2015]; Portel [Overal et al., 1997; Harada & Araújo, 2002; Harada, 2016]; Santarém [Vasconcelos et al., 2006]; Terra Santa [Santos et al., 2008].
description: Published as part of DE ALBUQUERQUE, EMÍLIA ZOPPAS, PRADO, LÍVIA PIRES DO, ANDRADE-SILVA, JOUDELLYS, DE SIQUEIRA, EMELY LAIARA SILVA, DA SILVA SAMPAIO, KELLY LIANE, ALVES, DIEGO, BRANDÃO, CARLOS ROBERTO FERREIRA, ANDRADE, PALOMA L., FEITOSA, RODRIGO MACHADO, DE AZEVEDO KOCH, ELMO BORGES, DELABIE, JACQUES HUBERT CHARLES, FERNANDES, ITANNA, BACCARO, FABRÍCIO BEGGIATO, SOUZA, JORGE LUIZ PEREIRA, ALMEIDA, RONY PETERSON SANTOS & SILVA, ROGÉRIO R., 2021, Ants of the State of Pará, Brazil: a historical and comprehensive dataset of a key biodiversity hotspot in the Amazon Basin, pp. 1-83 in Zootaxa 5001 (1) on page 38, DOI: 10.11646/zootaxa.5001.1.1, http://zenodo.org/record/5122523
3D Printing of Bone Grafts for Cleft Alveolar Osteoplasty – In vivo Evaluation in a Preclinical Model
Creators: name: Korn, Paula
name: Ahlfeld, Tilman
name: Lahmeyer, Franziska
name: Kilian, David
name: Sembdner, Philipp
name: Stelzer, Ralph
name: Pradel, Winnie
name: Franke, Adrian
name: Rauner, Martina
name: Range, Ursula
name: Stadlinger, Bernd
name: Lode, Anja
name: Lauer, Günter
name: Gelinsky, Michael
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: 3D printing
subject: bone graft
subject: bone tissue engineering
subject: alveolar cleft model
subject: calcium phosphate cement
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: One of the most common hereditary craniofacial anomalies in humans are cleft lip and cleft alveolar bone with or without cleft palate. Current clinical practice, the augmentation of the persisting alveolar bone defect by using autologous bone grafts, has considerable disadvantages motivating to an intensive search for alternatives. We developed a novel therapy concept based on 3D printing of biodegradable calcium phosphate-based materials and integration of osteogenic cells allowing fabrication of patient-specific, tissue-engineered bone grafts. Objective of the present study was the in vivo evaluation of implants in a rat alveolar cleft model. Scaffolds were designed according to the defect's geometry with two different pore designs (60 degrees and 30 degrees rotated layer orientation) and produced by extrusion-based 3D plotting of a pasty calcium phosphate cement. The scaffolds filled into the artificial bone defect in the palate of adult Lewis rats, showing a good support. Half of the scaffolds were colonized with rat mesenchymal stromal cells (rMSC) prior to implantation. After 6 and 12 weeks, remaining defect width and bone formation were quantified histologically and by microCT. The results revealed excellent osteoconductive properties of the scaffolds, a significant influence of the pore geometry (60 degrees > 30 degrees), but no enhanced defect healing by pre-colonization with rMSC.
Trichosomoididae Hall 1916
Creators: name: Arai, Hisao P.
name: Smith, John W.
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Nematoda
Adenophorea
Trichocephalida
Trichosomoididae

description: Family TRICHOSOMOIDIDAE Hall, 1916
Preamble: Conboy & Speare (2002) speculated that Huffmanela - type eggs found in the skin of various species of Sebastes from coastal British Columbia might represent a new species. Indeed, Moravec, Conboy & Speare (2005) subsequently re-examined histologically the same rockfish material and recovered two complete males, three complete females and worm fragments representing a new species, namely, H. canadensis. The nematode has commercial significance because infected rockfish with so-called “black mould” in the skin are downgraded in the market.
description: Published as part of Arai, Hisao P. & Smith, John W., 2016, Guide to the Parasites of Fishes of Canada Part V: Nematoda, pp. 1-274 in Zootaxa 4185 (1) on page 33, DOI: 10.11646/zootaxa.4185.1.1, http://zenodo.org/record/165530
Heavy quark transport in a viscous semi QGP
Creators: name: Singh, Balbeer
name: Mishra, Hiranmaya
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We study the effect of shear and bulk viscosities on the heavy quark transport coefficient within the matrix model of semi QGP. Dissipative effects are incorporated through the first-order viscous correction in the quark/antiquark and gluon distribution function. It is observed that while the shear viscosity effects reduces the drag of heavy quark the bulk viscosity effects increase the drag and the diffusion coefficients of heavy quark. For finite values of η/s and ξ/s, Polyakov loop further decreases the drag and the diffusion coefficients as compared to perturbative QCD.
description: 14 pages, 7 figures