cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
title: ADCO, Septième cartulaire de Saint-Étienne de Dijon (1661-1665), Cart. 29 (G 134), 996 folios, f. 0329
Creators: name: de la Côte d'Or, Archives départementales
name: Projet CBMA
name: CG21/F.PETOT/2012
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Septième cartulaire de Saint-Étienne de Dijon (1661-1665), Archives départementales de la Côte-d'Or, Cart. 29 (G 134), 996 folios, f. 0329, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Septième cartulaire de Saint-Étienne de Dijon (1661-1665), Archives départementales de la Côte-d'Or, Cart. 29 (G 134), 996 folios, f. 0329, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
Additional file 1 of Perceptions towards COVID-19 and adoption of preventive measures among the public in Saudi Arabia: a cross sectional study
Creators: name: Alkhaldi, Ghadah
name: Aljuraiban, Ghadeer S.
name: Alhurishi, Sultana
name: De Souza, Roberta
name: Lamahewa, Kethakie
name: Lau, Rosa
name: Alshaikh, Fahdah
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1.
Additional file 1: of The impact of peppermint oil on the irritable bowel syndrome: a meta-analysis of the pooled clinical data
Creators: name: N. Alammar
name: L. Wang
name: B. Saberi
name: J. Nanavati
name: G. Holtmann
name: R. Shinohara
name: G. Mullin
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Inorganic Chemistry
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Table of Medical Literature Search Results for Randomized Controlled Trials of Enteric-Coated Peppermint Oil for the Irritable Bowel Syndrome. We searched the medical literature for randomized controlled trials of enteric-coated peppermint oil for the treatment of the irritable bowel syndrome. Our search methodology yielded 102 reports in PubMed, 396 in Embase, 201 in Web of Science, and 60 in the Cochrane library. (PDF 265 kb)
First determination of the quark mixing matrix element Vtb independent of assumptions of unitarity
Creators: name: Swain, John
name: Taylor, Lucas
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We present a new method for the determination of the Cabibbo-Kobayashi-Maskawa quark mixing matrix element $|V_{tb}|$ from electroweak loop corrections, in particular those affecting the process $Z\to b\bar{b}$. From a combined analysis of results from the LEP, SLC, Tevatron, and neutrino scattering experiments we determine $|V_{tb}| = 0.77^{+0.18}_{-0.24}$. This is the first determination of $|V_{tb}|$ which is independent of unitarity assumptions.
description: 4 pages, 2 figures
Grid-based diffusion Monte Carlo for fermions without the fixed-node approximation
Creators: name: Kunitsa, Alexander A.
name: Hirata, So
Publisher: name: arXiv
Year: 2018
Subjects: subject: Computational Physics (physics.comp-ph)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: A diffusion Monte Carlo algorithm is introduced that can determine the correct nodal structure of the wave function of a few-fermion system and its ground-state energy without an uncontrolled bias. This is achieved by confining signed random walkers to the points of a uniform infinite spatial grid, allowing them to meet and annihilate one another to establish the nodal structure without the fixed-node approximation. An imaginary-time propagator is derived rigorously from a discretized Hamiltonian, governing a non-Gaussian, sign-flipping, branching, and mutually annihilating random walk of particles. The accuracy of the resulting stochastic representations of a fermion wave function is limited only by the grid and imaginary-time resolutions and can be improved in a controlled manner. The method is tested for a series of model problems including fermions in a harmonic trap as well as the He atom in its singlet or triplet ground state. For the latter case, the energies approach from above with increasing grid resolution and converge within $0.015~{E}_\text{h}$ of the exact basis-set-limit value with a statistical uncertainty of $10^{-5}~{E}_\text{h}$ without an importance sampling or Jastrow factor.
Additional file 1 of The role of routine FIBERoptic bronchoscopy monitoring during percutaneous dilatational TRACHeostomy (FIBERTRACH): a study protocol for a randomized, controlled clinical trial
Creators: name: Añón, José M.
name: Arellano, María Soledad
name: Pérez-Márquez, Manuel
name: Díaz-Alvariño, Claudia
name: Márquez-Alonso, José A.
name: Rodríguez-Peláez, Jorge
name: Nanwani-Nanwani, Kapil
name: Martín-Pellicer, Ana
name: Civantos, Belén
name: López-Fernández, Alba
name: Seises, Irene
name: García-Nerín, Jorge
name: Figueira, Juan C.
name: Casero, Henar
name: Vejo, Javier
name: Agrifoglio, Alexander
name: Cachafeiro, Lucía
name: Díaz-Almirón, Mariana
name: Villar, Jesús
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Molecular Biology
subject: Neuroscience
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1. Approval of the Ethics Committee (according to the Spanish legislation #RD 1090/2015, this approval is mandatory for all participating centers).
Seminavis pusilla Cox & Reid
Creators: name: Joh, Gyeongje
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Chromista
Ochrophyta
Bacillariophyceae
Naviculales
Naviculaceae
Seminavis
Seminavis pusilla

description: 54. Seminavis cf. pusilla (Grunow) Cox & Reid (Figs 126, 127)
 Basionym: Cymbella pusilla Grunow.
 Synonym: Navicymbula pusilla (Grunow) Krammer.
 Type locality: Kunsee; Bayonne.
 References: Cox & Reid 2004, p. 60; Cavalcante et al. 2014, p. 258, figs 1, 2; Donadel 2018, p. 14, figs 3m, 14a–g.
 Morphometrics: Valves 17–22 (22–30) μm long, 5–7 (5–7) μm wide, transapical striae 18–19 (17–19) in 10 μm in dorsal side, 16 (15–17) in 10 μm in ventral side.
 Remarks: Specimens collected in local areas exhibit lower valve length and width. Seminavis pusilla has been reported in a lagoon of the Galapagos Islands (Seddon et al. 2011), coastal Mediterranean Spanish lakes (Antón-Garrido et al 2013), lagoons of the southern Brazil (Donadel 2018), and southern Everglades of Florida (Mazzei et al. 2018). The brackish species inhabits saline lakes in the desert of Inner Mongolia, China (Rioual et al. 2014). Further, the species has been reported in freshwater with a high mineral content throughout the United States as Navicymbula pusilla (Potapova 2011), and in a river of Northeast Brazil as Seminavis pusilla (Cavalcante et al. 2014). Despite the unusual distribution, it has been reported in tropical or subtropical coasts. In South Korea, it was encountered rarely in reed marsh in the lagoon of the Seogwipo coast in Jeju Island, and represents a new record for South Korea.
description: Published as part of Joh, Gyeongje, 2021, Distribution and frequent occurrence of diatom taxa (Bacillariophyta) inhabiting warmer oceans in Seogwipo coast of Jeju Island, southernmost Korea, pp. 1-67 in Phytotaxa 517 (1) on page 35, DOI: 10.11646/phytotaxa.517.1.1, http://zenodo.org/record/8061058
Additional file 1 of Dynamic Bayesian network for predicting physiological changes, organ dysfunctions and mortality risk in critical trauma patients
Creators: name: Chen, Qi
name: Tang, Bihan
name: Song, Jiaqi
name: Jiang, Ying
name: Zhao, Xinxin
name: Ruan, Yiming
name: Zhao, Fangjie
name: Wu, Guosheng
name: Chen, Tao
name: He, Jia
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Biotechnology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified

description: Additional file 1: Table S1. The definition of non-fault value. Table S2. The missing proportion of temporal physiological variables in MIMIC-III. Table S3. The criteria of organ dysfunctions. Table S4. Cause of injury and Injury Severity Score from ICU-CH. Table S5. Prediction accuracy of variables at 24th hour and 48th hour in death population from development datasets (MIMICIII). Table S6. Prediction accuracy of variables at 24th hour and 48th hour in death population from testing dataset (ICU-CH). Figure S1. Prediction accuracy of variables at 24th hour and 48th hour in death population from testing dataset (ICU-CH). Figure S2. Calibration curves. Supplement texts. The description and R codes of dynamic Bayesian network.
Additional file 5 of Age-related changes in brain phospholipids and bioactive lipids in the APP knock-in mouse model of Alzheimer’s disease
Creators: name: Emre, Ceren
name: Do, Khanh V.
name: Jun, Bokkyoo
name: Hjorth, Erik
name: Alcalde, Silvia Gómez
name: Kautzmann, Marie-Audrey I.
name: Gordon, William C.
name: Nilsson, Per
name: Bazan, Nicolas G.
name: Schultzberg, Marianne
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 5: Fig. S5. Heat map analysis of bioactive LMs, AA- and DHA-containing phospholipids and amyloid levels in 2, 4, 8 and 18 months-old WT (n = 4-6) and App KI mice (n = 6-7). Rows represent the median values and columns represent different ages of WT and App KI mice. Grey colour represents undetected value.
Quantum entanglement and information processing via excitons in optically-driven quantum dots
Creators: name: Reina, John H.
name: Quiroga, Luis
name: Johnson, Neil F.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Quantum Physics (quant-ph)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We show how optically-driven coupled quantum dots can be used to prepare maximally entangled Bell and Greenberger-Horne-Zeilinger states. Manipulation of the strength and duration of the selective light-pulses needed for producing these highly entangled states provides us with crucial elements for the processing of solid-state based quantum information. Theoretical predictions suggest that several hundred single quantum bit rotations and Controlled-Not gates could be performed before decoherence of the excitonic states takes place.
description: 3 separate PostScript Figures + 7 pages. Typos corrected. Minor changes added. This updated version is to appear in PRA
Additional file 3 of Age-related changes in brain phospholipids and bioactive lipids in the APP knock-in mouse model of Alzheimer’s disease
Creators: name: Emre, Ceren
name: Do, Khanh V.
name: Jun, Bokkyoo
name: Hjorth, Erik
name: Alcalde, Silvia Gómez
name: Kautzmann, Marie-Audrey I.
name: Gordon, William C.
name: Nilsson, Per
name: Bazan, Nicolas G.
name: Schultzberg, Marianne
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 3: Fig. S3. Age comparison of cytokines and chemokines in 2, 4, 8 and 18 months-old mice for WT and App KI in the brain. Cytokines and chemokines were analyzed in homogenates of cerebral cortex and hippocampus by Meso scale v-plex assay. Data are expressed as mean ± SEM, 5-6 mice in each group and statistical analysis was performed with Kruskal-Wallis one-way analysis of variance test with Dunn’s multiple comparisons post hoc test, *P
Fallacia ny D. G. Mann
Creators: name: Joh, Gyeongje
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Fallacia
Fallacia ny

description: 40. Fallacia ny (Cleve) D.G. Mann (Figs 91, 92)
 Basionym: Navicula ny Cleve.
 Synonym: Navicula reichardtii var. intermedia M. Peragallo.
 Type locality: Java, Indonesia.
 References: Hustedt 1961–1966, p. 369, fig. 1459; Witkowski et al. 2000. p. 209, pl. 70, figs 8–11.
 Morphometrics: Valves 18–41 (20–48) μm long, 12–21 (12–27) μm wide, and transapical striae 13–15 (ca 16) in 10 μm.
 Remarks: This species is characterized by strong curves in the same direction, of the terminal ends of raphe. The taxon is distributed in tropical marine waters, and is not found in Europe (Hustedt 1961–1966, Witkowski et al. 2000). The illustrations of this taxon in Witkowski et al. (2000) were obtained from Sao Island of Azores in the western Atlantic Ocean, the Indian Ocean of Kenia, Qurum Beach of Oman, and Shatt-al-Arab Delta in Iraq. It is rare in Rodrigues Island in the western Indian Ocean (Al-Handal et al. 2016). It is a typical tropical diatom inhabiting warmer coasts. This taxon was rarely found as an epiphyte on seaweeds or a benthic in the Seogwipo coast, and is new to South Korea.
description: Published as part of Joh, Gyeongje, 2021, Distribution and frequent occurrence of diatom taxa (Bacillariophyta) inhabiting warmer oceans in Seogwipo coast of Jeju Island, southernmost Korea, pp. 1-67 in Phytotaxa 517 (1) on page 29, DOI: 10.11646/phytotaxa.517.1.1, http://zenodo.org/record/8061058
Exploiting Explicit Paths for Multi-hop Reading Comprehension
Creators: name: Kundu, Souvik
name: Khot, Tushar
name: Sabharwal, Ashish
name: Clark, Peter
Publisher: name: arXiv
Year: 2018
Subjects: subject: Computation and Language (cs.CL)
subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: We propose a novel, path-based reasoning approach for the multi-hop reading comprehension task where a system needs to combine facts from multiple passages to answer a question. Although inspired by multi-hop reasoning over knowledge graphs, our proposed approach operates directly over unstructured text. It generates potential paths through passages and scores them without any direct path supervision. The proposed model, named PathNet, attempts to extract implicit relations from text through entity pair representations, and compose them to encode each path. To capture additional context, PathNet also composes the passage representations along each path to compute a passage-based representation. Unlike previous approaches, our model is then able to explain its reasoning via these explicit paths through the passages. We show that our approach outperforms prior models on the multi-hop Wikihop dataset, and also can be generalized to apply to the OpenBookQA dataset, matching state-of-the-art performance.
Perturbation expansion for 2-D Hubbard model
Creators: name: Zlatic, V.
name: Horvatic, B.
name: Dolicki, B.
name: Grabowski, S.
name: Entel, P.
name: Schotte, K. -D.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We develop an efficient method to calculate the third-order corrections to the self-energy of the hole-doped two-dimensional Hubbard model in space-time representation. Using the Dyson equation we evaluate the renormalized spectral function in various parts of the Brillouin zone and find significant modifications with respect to the second-order theory even for rather small values of the coupling constant U. The spectral function becomes unphysical for $ U \simeq W $, where W is the half-width of the conduction band. Close to the Fermi surface and for U
description: 17 pages, 11 Postscript figures, Phys. Rev. B, accepted
Additional file 2 of Age-related changes in brain phospholipids and bioactive lipids in the APP knock-in mouse model of Alzheimer’s disease
Creators: name: Emre, Ceren
name: Do, Khanh V.
name: Jun, Bokkyoo
name: Hjorth, Erik
name: Alcalde, Silvia Gómez
name: Kautzmann, Marie-Audrey I.
name: Gordon, William C.
name: Nilsson, Per
name: Bazan, Nicolas G.
name: Schultzberg, Marianne
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 2: Fig. S2. Western blot analysis of ERK1/2, p38, Akt and JNK phosphorylation in cortex and hippocampus of WT and App KI mice at 2, 4, 8 and 18 months-age. Densitometric quantification of bands after normalization with total protein and internal control are shown. Data are expressed as mean ± SEM, 6 mice in each group, and statistical significance analysed by Mann-Whitney U test (#P
WEBINAR: MaveDB: discovery and interpretation of high-throughput functional assay data
Creators: name: Rubin, Alan
Publisher: name: Zenodo
Year: 2024
Subjects: subject: Bioinformatics
subject: FOS: Computer and information sciences
subject: Genetic variation
subject: Functional annotation
subject: Clinical genetics

description: This record includes training materials associated with the Australian BioCommons webinar ‘MaveDB: discovery and interpretation of high-throughput functional assay data’. This webinar took place on 26 March 2024.

Event description

Multiplexed assays of variant effect (MAVEs) are a family of experimental techniques that measure all single amino acid or single nucleotide changes in a gene or other functional element. MaveDB is an international community database that enables discovery and reuse of data from these experiments. It provides a platform for integrating large-scale measurements of sequence variant impact with applications that can be used to interpret the data for basic and clinical research.

In this webinar we consider: 

What are MAVEs and how are the experiments performed?

How much MAVE data is available in MaveDB and how is it organised?

Who can submit datasets to MaveDB?

What are some of the clinical applications for MAVEs and how is the data being used to understand patient variants?

 

Speaker: Dr Alan Rubin, Senior Research Officer, WEHI 

Host: Dr Melissa Burke, Australian BioCommons

 

Materials

Materials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event.

Files and materials included in this record:

Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc.

Index of training materials (PDF): List and description of all materials associated with this event including the name, format, location and a brief description of each file.

MAVEDB_slides: A PDF copy of the slides presented during the webinar.

Materials shared elsewhere:

A recording of this webinar is available on the Australian BioCommons YouTube Channel: https://youtu.be/BXGQ2IuDnGE
Trachyneis velata Cleve
Creators: name: Joh, Gyeongje
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Chromista
Ochrophyta
Bacillariophyceae
Naviculales
Naviculaceae
Trachyneis
Trachyneis velata

description: 55. Trachyneis velata (A. Schmidt) Cleve (Figs 116, 117)
 Basionym: Navicula velata A. Schmidt.
 Type locality: Sandwich Island (Hawaiian Islands).
 References: Witkowski et al. 2000, p. 356, pl. 159, figs 7, 8; Lobban et al. 2012, p. 293, pl. 49, figs 1, 2.
 Morphometrics: Valves 82–150 (70–130) μm long, 23–27 (20–22) μm wide, transapical striae 10–13 (15–16) in 10 μm.
 Remarks: The transapical striae of the local specimens are denser than those of the type ones, and the valves are much wider. Trachyneis velata has been found in False Bay of South Africa (Giffen 1971), the Indian Ocean (Giffen 1980), the Caribbean Sea (Foged 1984, Lobban et al. 2012), and the Pacific Ocean (Foged 1987, Witkowski et al. 2000, Lobban et al. 2012, Park et al. 2018), and frequently reported from mangrove lagoon of the Baja California Peninsula, Mexico (Siqueiros-Beltrones & López-Fuerte 2006, López-Fuerte et al. 2010, Siqueiros-Beltrones et al. 2017), and the southern coast of Wellington, New Zealand (Harper & Harper 2010). It is mentioned on the algal checklist of Hawaii (MacCaughey 1918). In South Korea, it was encountered frequently as an epiphyte on seaweeds along the Seogwipo coast in Jeju Island.
description: Published as part of Joh, Gyeongje, 2021, Distribution and frequent occurrence of diatom taxa (Bacillariophyta) inhabiting warmer oceans in Seogwipo coast of Jeju Island, southernmost Korea, pp. 1-67 in Phytotaxa 517 (1) on page 35, DOI: 10.11646/phytotaxa.517.1.1, http://zenodo.org/record/8061058
Online Model Distillation for Efficient Video Inference
Creators: name: Mullapudi, Ravi Teja
name: Chen, Steven
name: Zhang, Keyi
name: Ramanan, Deva
name: Fatahalian, Kayvon
Publisher: name: arXiv
Year: 2018
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: High-quality computer vision models typically address the problem of understanding the general distribution of real-world images. However, most cameras observe only a very small fraction of this distribution. This offers the possibility of achieving more efficient inference by specializing compact, low-cost models to the specific distribution of frames observed by a single camera. In this paper, we employ the technique of model distillation (supervising a low-cost student model using the output of a high-cost teacher) to specialize accurate, low-cost semantic segmentation models to a target video stream. Rather than learn a specialized student model on offline data from the video stream, we train the student in an online fashion on the live video, intermittently running the teacher to provide a target for learning. Online model distillation yields semantic segmentation models that closely approximate their Mask R-CNN teacher with 7 to 17$\times$ lower inference runtime cost (11 to 26$\times$ in FLOPs), even when the target video's distribution is non-stationary. Our method requires no offline pretraining on the target video stream, achieves higher accuracy and lower cost than solutions based on flow or video object segmentation, and can exhibit better temporal stability than the original teacher. We also provide a new video dataset for evaluating the efficiency of inference over long running video streams.
Additional file 1 of Age-related changes in brain phospholipids and bioactive lipids in the APP knock-in mouse model of Alzheimer’s disease
Creators: name: Emre, Ceren
name: Do, Khanh V.
name: Jun, Bokkyoo
name: Hjorth, Erik
name: Alcalde, Silvia Gómez
name: Kautzmann, Marie-Audrey I.
name: Gordon, William C.
name: Nilsson, Per
name: Bazan, Nicolas G.
name: Schultzberg, Marianne
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1: Fig. S1. Analysis of LXA4 and MaR1 in cerebral cortex and hippocampus of App KI and WT mice. (A) Lipoxin A4 (LXA4) and maresin 1 (MaR1) were analyzed in the cerebral cortex and hippocampus of 2, 4, 8 and 18 months-old WT (n = 4-6) and App KI mice (n = 6-7) using LC-MS/MS. Horizontal bars indicate median. Groups below the limit of detection were not shown. Kruskal-Wallis with Dunn’s post hoc test was used for multiple comparisons (*P
Additional file 1 of Symptoms, impacts, and suitability of the Pulmonary Arterial Hypertension – Symptoms and Impact (PAH-SYMPACT™) questionnaire in patients with chronic thromboembolic pulmonary hypertension (CTEPH): a qualitative interview study
Creators: name: Currie, Brooke
name: Davies, Evan
name: Beaudet, Amélie
name: Stassek, Larissa
name: Kleinman, Leah
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Physiology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1: Supplementary Table 1. Outline of the semi-structured qualitative interview guide. Supplementary Table 2. Concept saturation grid for symptoms. Supplementary Table 3. Concept saturation grid for impacts. Supplementary Table 4. Representative quotations for the most frequently endorsed symptom concepts. Supplementary Table 5. Representative quotations for the most frequently endorsed impact concepts.
title: ADCO, Ordre cistercien et abbaye de Cîteaux : comptes pour l'ordre (1337-1347), comptes du boursier (1377-1402) (11 H 1160), f. 00342
Creators: name: de la Côte-d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2017
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: comptes
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Ordre cistercien et abbaye de Cîteaux : comptes pour l'ordre (1337-1347), comptes du boursier (1377-1402), Archives départementales de la Côte-d'Or, (11 H 1160). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Ordre cistercien et abbaye de Cîteaux : comptes pour l'ordre (1337-1347), comptes du boursier (1377-1402), Archives départementales de la Côte-d'Or, (11 H 1160), f. 00342, in Projet CBMA - Corpus Burgundiae Medii Aevi \[Ressource en ligne\], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Additional file 6 of In vivo imaging of immediate early gene expression dynamics segregates neuronal ensemble of memories of dual events
Creators: name: Meenakshi, P.
name: Kumar, S.
name: Balaji, J.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Neuroscience
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Additional file 6: Fig. S6. Percentage freezing for the mice used in dual exposure contextual fear conditioning paradigm. M1: Red circle, M2: Black square, M3: Blue triangle.
One-dimensional spin-liquid without magnon excitations
Creators: name: Nersesyan, A. A.
name: Tsvelik, A. M.
Publisher: name: arXiv
Year: 1996
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: It is shown that a sufficiently strong four-spin interaction in the spin-1/2 spin ladder can cause dimerization. Such interaction can be generated either by phonons or (in the doped state) by the conventional Coulomb repulsion between the holes. The dimerized phases are thermodynamically undistinguishable from the Haldane phase, but have dramatically different correlation functions: the dynamical magnetic susceptibility, instead of displaying a sharp single magnon peak near $q = π$, shows only a two-particle threshold separated from the ground state by a gap.
description: 9 pages, LaTex, to be published in Phys. Rev. Lett., vol. 78, May 1997
Additional file 1: of Emergence of vancomycin-resistant enterococci in Switzerland: a nation-wide survey
Creators: name: NiccolĂ˛ Buetti
name: Nasstasja Wassilew
name: Rion, Viktorija
name: Senn, Laurence
name: CĂŠline Gardiol
name: Widmer, Andreas
name: Marschall, Jonas
Publisher: name: figshare
Year: 2019
Subjects: subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified

description: English version of the questionnaire (translated from German, French and Italian). (PDF 563â kb)
ФОРМИРОВАНИЯ СОЦИОКУЛЬТУРНОЙ КОМПЕТЕНЦИИ С ИСПОЛЬЗОВАНИЕМ НАЦИОНАЛЬНО-РЕГИОНАЛЬНОГО КОМПОНЕНТА В ПРЕПОДАВАНИИ РУССКОГО ЯЗЫКА КАК ИНОСТРАННОГО
Creators: name: Уринова, Шоира
name: Азизова, Мухнора
Publisher: name: Zenodo
Year: 2024

description: Статья посвящена основным способам формирования социокультурной компетенции обучающихся посредством интеграции национально-регионального компонента в процесс обучения русского языку как иностранному.
Berry phase of the composite Fermi-liquid
Creators: name: Ji, Guangyue
name: Shi, Junren
Publisher: name: arXiv
Year: 2019
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We derive the definition of the Berry phase for the adiabatic transport of a composite fermion (CF) in a half-filled composite Fermi-liquid (CFL). It is found to be different from that adopted in previous investigations by Geraedts et al. For the standard CFL wave function, we analytically show that the Berry curvature is uniformly distributed in the momentum space. For the Jain-Kamilla wave function, we numerically show that its Berry curvature has a continuous distribution inside the Fermi sea and vanishes outside. We conclude that the CF with respect to both the microscopic wave-functions is not a massless Dirac particle.
description: 10 pages, 1 figure, 2 tables
Regressive and generative neural networks for scalar field theory
Creators: name: Zhou, Kai
name: Endrődi, Gergely
name: Pang, Long-Gang
name: Stöcker, Horst
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: Data Analysis, Statistics and Probability (physics.data-an)
subject: FOS: Physical sciences

description: We explore the perspectives of machine learning techniques in the context of quantum field theories. In particular, we discuss two-dimensional complex scalar field theory at nonzero temperature and chemical potential -- a theory with a nontrivial phase diagram. A neural network is successfully trained to recognize the different phases of this system and to predict the value of various observables, based on the field configurations. We analyze a broad range of chemical potentials and find that the network is robust and able to recognize patterns far away from the point where it was trained. Aside from the regressive analysis, which belongs to supervised learning, an unsupervised generative network is proposed to produce new quantum field configurations that follow a specific distribution. An implicit local constraint fulfilled by the physical configurations was found to be automatically captured by our generative model. We elaborate on potential uses of such a generative approach for sampling outside the training region.
description: 11 pages, 11 figures
Light Fermionic WIMP Dark Matter with Light Scalar Mediator
Creators: name: Matsumoto, Shigeki
name: Tsai, Yue-Lin Sming
name: Tseng, Po-Yan
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: A light fermionic weakly interacting massive particle (WIMP) dark matter is investigated by studying its minimal renormalizable model, where it requires a scalar mediator to have an interaction between the WIMP and standard model particles. We perform a comprehensive likelihood analysis of the model involving the latest but robust constraints and those will be obtained in the near future. In addition, we pay particular attention to properly take the kinematically equilibrium condition into account. It is shown that near-future experiments and observations such as low-mass direct dark matter detections, flavor experiments and CMB observations play important roles to test the model. Still, a wide parameter region will remain even if no WIMP and mediator signals are detected there. We also show that precise Higgs boson measurements at future lepton colliders will significantly test this remaining region.
description: 50 pages, 52 figures
Critical properties of the metal-insulator transition in anisotropic systems
Creators: name: Milde, Frank
name: Römer, Rudolf A.
name: Schreiber, Michael
name: Uski, Ville
Publisher: name: arXiv
Year: 1999
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: We study the three-dimensional Anderson model of localization with anisotropic hopping, i.e., weakly coupled chains and weakly coupled planes. In our extensive numerical study we identify and characterize the metal-insulator transition by means of the transfer-matrix method. The values of the critical disorder $W_c$ obtained are consistent with results of previous studies, including multifractal analysis of the wave functions and energy level statistics. $W_c$ decreases from its isotropic value with a power law as a function of anisotropy. Using high accuracy data for large system sizes we estimate the critical exponent as $ν=1.62\pm0.07$. This is in agreement with its value in the isotropic case and in other models of the orthogonal universality class.
description: 17 pages, 7 figures, requires svjour.csl and svepj.clo (included), submitted to EPJB
Supersymmetric spacetimes in 2+1 adS-supergravity models
Creators: name: Izquierdo, J. M.
name: Townsend, P. K.
Publisher: name: arXiv
Year: 1995
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We find a class of (2+1)-dimensional spacetimes admitting Killing spinors appropriate to (2,0) adS-supergravity. The vacuum spacetimes include anti-de Sitter (adS) space and charged extreme black holes, but there are many others, including spacetimes of arbitrarily large negative energy that have only conical singularities, and the spacetimes of fractionally charged point particles. The non-vacuum spacetimes are those of self-gravitating solitons obtained by coupling (2,0) adS supergravity to sigma-model matter. We show, subject to a condition on the matter currents (satisfied by the sigma model), and a conjecture concerning global obstructions to the existence of certain types of spinor fields, that the mass of each supersymmetric spacetime saturates a classical bound, in terms of the angular momentum and charge, on the total energy of arbitrary field configurations with the same boundary conditions, although these bounds may be violated quantum mechanically.
description: 47 pages, phyzzx.tex, no figures.
Data from: Iris luojiensis (Iridaceae), a new species from Southwest China
Creators: name: Huang, Hanwen
Publisher: name: Zenodo
Year: 2024
Subjects: Iris luojiensis
Morphology
complete plastid genome
new species
phylogeny

description: Iris luojiensis, sp. nov. from Southwest China is described and illustrated. This species occurs on shrub slopes in mountainous regions of southwest China. Iris luojiensis is morphologically similar to Iris japonica Thunb., Iris calcicola Z.C.Lu, Z.P.Huang & Yan Liu and Iris watii Baker, but easily distinguished from them by its bluish-violet flowers, 3-6 flowering-stem branches, leaf size, particularly the upper leaves, and by only having two to three (seldom one) flowers per bract. A phylogenetic analysis based on the complete plastid genome supports the separation of I. luojiensis from other morphologically related species. According to morphological and molecular evidence, I. luojiensis can be placed in the I. sect. Lophiris.
description: Funding provided by: Kunming Institute of BotanyCrossref Funder Registry ID: https://ror.org/02e5hx313Award Number:
description: Phylogenetic analysis of chloroplast genomes: CTAB (Cetyl Trimethyl Ammonium Bromide) method (Doyle and Doyle, 1987). The total extracted DNA was sent to Wuhan BGI for further database construction and sequencing. A 300-400 bp DNA small fragment library was constructed using the BGISEQ-500 platform. Subsequently, paired-end 150 (PE150) sequencing was performed using the MGISEQ-2000 platform, resulting in 2G paired-end data in fastq format.
Additional file 1: of Barcode identification for single cell genomics
Creators: name: Akshay Tambe
name: Pachter, Lior
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Figure S1. Sircel can robustly identify the number of cells present in a dataset. We performed several simulations with error-prone reads. The number of errors per read, the type of errors, and the distribution of barcode abundances were all systematically varied. Performance was compared over three pipelines: a naĂŻve approach (grey), using Sircel and k-mers (red) and using Sircel and Levenshtein distance (cyan). A. Any errors. B. Deletions. C. Insertions. D. Mismatches. Figure S2. Assigning reads to consensus barcodes depends on errors rate and barcode abundance distribution. Using the same simulations as before, the fraction of reads that were correctly assigned in each cell was quantified. We find that Sircel using Levenshtein distance performs the best. A. Any errors. B. Deletions. C. Insertions. D. Mismatches. Figure S3. Assigning reads to consensus barcodes by k-mer compatibility depends on errors rate and barcode abundance distribution. In the same simulations, the fraction of reads that could not be unambigiously assigned in each cell was quantified. A. Any errors. B. Deletions. C. Insertions. D. Mismatches. Figure S4. Indel errors are present in real data. We separated barcodes in a species mixing experiment from Seqwell (SRR5250839), and evaluated the Hamming and Levenshtein distances between each read and its consensus barcode. We find that Hamming distance is systematically larger than Levenshtein distance, indicating that the data contains indels. Figure S5. Species mixing with Seqwell data. We separated barcodes in a species mixing experiment from Seqwell and evaluated our ability to split reads by species. Figure S6. Circularized de Bruijn graph from real data. A de Bruijn subgraph was prepared from circularized reads that could be assigned assigned to 10 randomly selected barcodes from the Macosko et al. dataset is depicted here. Line transparency is proportional to the weight of each edge. (PDF 2486 kb)
Standard Quantum Limit and Heisenberg Limit in Function Estimation
Creators: name: Kura, Naoto
name: Ueda, Masahito
Publisher: name: arXiv
Year: 2018
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Unlike well-established parameter estimation, function estimation faces conceptual and mathematical difficulties despite its enormous potential utility. We establish the fundamental error bounds on function estimation in quantum metrology for a spatially varying phase operator, where various degrees of smooth functions are considered. The error bounds are identified in both cases of absence and presence of interparticle entanglement, which correspond to the standard quantum limit and the Heisenberg limit, respectively. Notably, these error bounds can be reached by either position-localized states or wavenumber-localized ones. In fact, we show that these error bounds are theoretically optimal for any type of probe states, indicating that quantum metrology on functions is also subject to the Nyquist-Shannon sampling theorem, even if classical detection is replaced by quantum measurement.
description: 12+9 pages, 1+0 figure
Trachyneis velata var. ornata Meister 1937
Creators: name: Joh, Gyeongje
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Chromista
Ochrophyta
Bacillariophyceae
Naviculales
Naviculaceae
Trachyneis
Trachyneis velata
Trachyneis velata var. ornata meister

description: 56. Trachyneis velata var. ornata Meister (Figs 114, 115)
 References: Meister 1937, p. 272, pl. 10, fig. 10; Podzorski & Håkansson 1987, p. 91, pl. 34, fig. 2.
 Type locality: Nagasaki.
 Morphometrics: Valves 35–46 (27–44) μm long, 12–13 (11–15) μm wide, transapical striae 17–19 (19–20) in 10 μm.
 Remarks: The striae on valves are composed of more or less elongated areolae. Six to seven very long areolae surround the central area, which is significantly smaller than that of the nominate variety, Trachyneis velata.
This taxon was first discovered in Nagasaki of Japan, and described by Meister (1937). It has been reported from Palawan of Philippines by Podzorski & Håkansson (1987). Until now, only two locations have been reported, but the taxon appears to grow in the warmer marine waters of Asia. However, it is possible that it may have been considered as small forms of the nominate variety, due to similar valve morphology. It was found rarely in rock pools and pseudo-lagoons along the Seogwipo coast in Jeju Island, and thus represents a new record for South Korea.
description: Published as part of Joh, Gyeongje, 2021, Distribution and frequent occurrence of diatom taxa (Bacillariophyta) inhabiting warmer oceans in Seogwipo coast of Jeju Island, southernmost Korea, pp. 1-67 in Phytotaxa 517 (1) on page 36, DOI: 10.11646/phytotaxa.517.1.1, http://zenodo.org/record/8061058
Interlayer coupling and the c-axis quasiparticle transport in high-$T_{c}$ cuprates
Creators: name: Kim, Wonkee
name: Carbotte, J. P.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: The c-axis quasiparticle conductivity shows different behavior depending on the nature of the interlayer coupling. For coherent coupling with a constant hopping amplitude $t_{\perp}$, the conductivity at zero frequency and zero temperature $σ(0,0)$ depends on the direction of the magnetic field, but it does not for angle-dependent hopping $t(ϕ)$ which removes the contribution of the nodal quasiparticles. For incoherent coupling, the conductivity is also independent of field direction and changes only when paramagnetic effects are included. The conductivity sum rule can be used to determine the admixture of coherent to incoherent coupling. The value of $σ(0,0)$ can be dominated by $t_{\perp}$ while at the same time $t(ϕ)$ dominates the temperature dependence of the superfluid density.
description: 2 figures
Characterization of a photon-number resolving SNSPD using Poissonian and sub-Poissonian light
Creators: name: Schmidt, Ekkehart
name: Reutter, Eric
name: Schwartz, Mario
name: Vural, Hüseyin
name: Ilin, Konstantin
name: Jetter, Michael
name: Michler, Peter
name: Siegel, Michael
Publisher: name: arXiv
Year: 2018
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: Applied Physics (physics.app-ph)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: Photon-number resolving (PNR) single-photon detectors are of interest for a wide range of applications in the emerging field of photon based quantum technologies. Especially photonic integrated circuits will pave the way for a high complexity and ease of use of quantum photonics. Superconducting nanowire single-photon detectors (SNSPDs) are of special interest since they combine a high detection efficiency and a high timing accuracy with a high count rate and they can be configured as PNR-SNSPDs. Here, we present a PNR-SNSPD with a four photon resolution suitable for waveguide integration operating at a temperature of 4 K. A high statistical accuracy for the photon number is achieved for a Poissonian light source at a photon flux below 5 photons/pulse with a detection efficiency of 22.7 +- 3.0% at 900 nm and a pulse rate frequency of 76 MHz. We demonstrate the ability of such a detector to discriminate a sub-Poissonian from a Poissonian light source.
Additional file 5 of In vivo imaging of immediate early gene expression dynamics segregates neuronal ensemble of memories of dual events
Creators: name: Meenakshi, P.
name: Kumar, S.
name: Balaji, J.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Neuroscience
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Additional file 5: Fig. S5. Fraction of IS1 SAC ROIs fit to equation 1 using fluorescence from imaging time points comparable to IS2 imaging time points (i.e. 80 min onwards from first context exposure) show that ~50% of data fit based on our criteria. (a) The graph shows the average responses during IS2 of “non-fit” ROIs from one mouse represented as open circles as function of time. Black solid squares are the corresponding values for IS1. The change in fluorescence over ~15 imaging sessions over 160 mins show a moderate decrease of about 20 – 30 % as compared to cellular profiles that show an order of magnitude increase from the baseline (~0 for fit cells). (b) The graph represents fraction of cells fit to equation 1 when the fit was performed with imaging time points comparable to IS2 imaging time points, i.e., ~80 min onwards. Orange bar is that fraction of fit ROIs of IS1 SAC but not IS2 SAC or DAC (mean of 3 mice, n = 32, 213, 162 ROIs) whereas green bar is the fraction fit ROIs of IS1 SAC (mean of 3 mice, n = 137, 327, 319 ROIs).
Additional file 4 of In vivo imaging of immediate early gene expression dynamics segregates neuronal ensemble of memories of dual events
Creators: name: Meenakshi, P.
name: Kumar, S.
name: Balaji, J.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Neuroscience
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Additional file 4: Fig. S4. Comparison of a DAC fit to Eq 1 with (t = 60min, solid green line) and without (t = 0 min, solid red line) delay along fit to Eq 2(solid blue line).