cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Observing Zitterbewegung in Ultracold Atoms
Creators: name: Vaishnav, J. Y.
name: Clark, Charles W.
Publisher: name: arXiv
Year: 2007
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We propose an optical lattice scheme which would permit the experimental observation of Zitterbewegung (ZB) with ultracold, neutral atoms. A four-level "tripod" variant of the usual setup for stimulated Raman adiabatic passage (STIRAP) has been proposed for generating non-Abelian gauge fields [1]. Dirac-like Hamiltonians, which exhibit ZB, are simple examples of such non-Abelian gauge fields; we show how a variety of them can arise, and how ZB can be observed, in a tripod system. We predict that the ZB should occur at experimentally accessible frequencies and amplitudes.
description: 4 pages, 5 figures. Added references
Counterexample-guided Abstraction Refinement
Creators: name: Clarke, Edmund M
name: Grumberg, Orna
name: Somesh  Jha
name: Lu, Yuan
name: Veith, Helmut
Publisher: name: Carnegie Mellon University
Year: 2011
Subjects: subject: 89999 Information and Computing Sciences not elsewhere classified
subject: FOS: Computer and information sciences

description: We present an automatic iterative abstraction-refinement methodology in which the initial abstract model is generated by an automatic analysis of the control structures in the program to be verified. Abstract models may admit erroneous (or “spurious”) counterexamples. We devise new symbolic techniques which analyze such counterexamples and refine the abstract model correspondingly. The refinement algorithm keeps the size of the abstract state space small due to the use of abstraction functions which distinguish many degrees of abstraction for each program variable. We describe an implementation of our methodology in NuSMV. Practical experiments including a large Fujitsu IP core design with about 500 latches and 10000 lines of SMV code confirm the effectiveness of our approach.
Experience of word-finding difficulties in aphasia (Fama et al., 2021)
Creators: name: Fama, Mackenzie E.
name: Lemonds, Erin
name: Levinson, Galya
Publisher: name: ASHA journals
Year: 2021
Subjects: subject: Language
subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine

description: Purpose: Anomia, or difficulty with naming and word finding, is a pervasive deficit among individuals with aphasia. There is an extensive literature on the mechanisms underlying anomia and on approaches to treatment, but very little is known about the subjective experience of anomia during day-to-day life.Method: As part of a larger testing battery, 53 adults with poststroke aphasia took part in a novel, structured interview that included an open-ended question about the general experience of anomia: “Do you ever know what you want to say, but you can’t say it out loud? Please describe that feeling.” Video-recorded interview responses were transcribed and analyzed using thematic analysis, an iterative, data-driven process that categorizes interview data into common themes.Results: Five main themes emerged among the data from 37 participants who produced adequate responses for use in thematic analysis: strategies to cope with or compensate for anomia, comments on awareness of the level of breakdown (e.g., "I have an idea, but can’t get the right words"), negative emotions, impact on relationships, and changes in frequency over time.Conclusions: Participants showed strong awareness of anomia and its implications, demonstrating an ability to describe their language breakdown, identify relevant strategies to compensate and/or cope, and acknowledge the impact of anomia on their emotions and social interactions. This patient perspective may serve as a valuable supplement to information typically gained via objective language assessments. Clinicians and researchers may wish to consider incorporating similar subjective measures during assessment and treatment planning.
Supplemental Material S1. Complete list of participant responses. Responses are shown in full, separated into those that were included in the analysis (n = 37) and those that were excluded due to limited content (n = 16). Comments by the interviewer are included in brackets and begin with “MEF.” Any names used have been replaced with a single initial in brackets for anonymity, e.g., [D].
Fama, M. E., Lemonds, E., & Levinson, G. (2021). The subjective experience of word-finding difficulties in people with aphasia: A thematic analysis of interview data. American Journal of Speech-Language Pathology. Advance online publication. https://doi.org/10.1044/2021_AJSLP-20-00265
Publisher Note: This article is part of the Special Issue: Select Papers From the 50th Clinical Aphasiology Conference.
Speeding up $N$-body simulations of modified gravity: Chameleon screening models
Creators: name: Bose, Sownak
name: Li, Baojiu
name: Barreira, Alexandre
name: He, Jian-hua
name: Hellwing, Wojciech A.
name: Koyama, Kazuya
name: Llinares, Claudio
name: Zhao, Gong-Bo
Publisher: name: arXiv
Year: 2016
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We describe and demonstrate the potential of a new and very efficient method for simulating certain classes of modified gravity theories, such as the widely studied $f(R)$ gravity models. High resolution simulations for such models are currently very slow due to the highly nonlinear partial differential equation that needs to be solved exactly to predict the modified gravitational force. This nonlinearity is partly inherent, but is also exacerbated by the specific numerical algorithm used, which employs a variable redefinition to prevent numerical instabilities. The standard Newton-Gauss-Seidel iterative method used to tackle this problem has a poor convergence rate. Our new method not only avoids this, but also allows the discretised equation to be written in a form that is analytically solvable. We show that this new method greatly improves the performance and efficiency of $f(R)$ simulations. For example, a test simulation with $512^3$ particles in a box of size $512 \, \mathrm{Mpc}/h$ is now 5 times faster than before, while a Millennium-resolution simulation for $f(R)$ gravity is estimated to be more than 20 times faster than with the old method. Our new implementation will be particularly useful for running very high resolution, large-sized simulations which, to date, are only possible for the standard model, and also makes it feasible to run large numbers of lower resolution simulations for covariance analyses. We hope that the method will bring us to a new era for precision cosmological tests of gravity.
description: 14 pages, 3 figures, 1 table; version accepted for publication in JCAP
Additional file 1 of Diagnostic stewardship aiming at expectorated or induced sputum promotes microbial diagnosis in community-acquired pneumonia
Creators: name: Waagsbø, Bjørn
name: Buset, Eva Margrethe
name: Longva, Jørn-Åge
name: Bjerke, Merete
name: Bakkene, Birgitte
name: Ertesvåg, Anne-Stine
name: Holmen, Hanne
name: Nikodojevic, Marko
name: Tran, To Thy
name: Christensen, Andreas
name: Nilsen, Einar
name: Damås, Jan Kristian
name: Heggelund, Lars
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: FOS: Biological sciences

description: Additional file 1. Appendix: Detailed information about the intervention.
Additional file 2 of A mutation that blocks integrin α4β7 activation prevents adaptive immune-mediated colitis without increasing susceptibility to innate colitis
Creators: name: Zhang, Hailong
name: Zheng, Yajuan
name: Pan, Youdong
name: Lin, Changdong
name: Wang, Shihui
name: Yan, Zhanjun
name: Lu, Ling
name: Ge, Gaoxiang
name: Li, Jinsong
name: Zeng, Yi Arial
name: Chen, Jianfeng
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Science Policy
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2: Table S1. The analysis of integrin β7-high splenic lymphocytes subsets in WT mice. Table S2. The list of primers used for genotyping. Table S3. The list of primers used for real-time quantitative PCR analyses
Computer model validation with functional output
Creators: name: Bayarri, M. J.
name: Berger, J. O.
name: Cafeo, J.
name: Garcia-Donato, G.
name: Liu, F.
name: Palomo, J.
name: Parthasarathy, R. J.
name: Paulo, R.
name: Sacks, J.
name: Walsh, D.
Publisher: name: arXiv
Year: 2007
Subjects: subject: Methodology (stat.ME)
subject: FOS: Computer and information sciences
subject: 62Q05

description: A key question in evaluation of computer models is Does the computer model adequately represent reality? A six-step process for computer model validation is set out in Bayarri et al. [Technometrics 49 (2007) 138--154] (and briefly summarized below), based on comparison of computer model runs with field data of the process being modeled. The methodology is particularly suited to treating the major issues associated with the validation process: quantifying multiple sources of error and uncertainty in computer models; combining multiple sources of information; and being able to adapt to different, but related scenarios. Two complications that frequently arise in practice are the need to deal with highly irregular functional data and the need to acknowledge and incorporate uncertainty in the inputs. We develop methodology to deal with both complications. A key part of the approach utilizes a wavelet representation of the functional data, applies a hierarchical version of the scalar validation methodology to the wavelet coefficients, and transforms back, to ultimately compare computer model output with field output. The generality of the methodology is only limited by the capability of a combination of computational tools and the appropriateness of decompositions of the sort (wavelets) employed here. The methods and analyses we present are illustrated with a test bed dynamic stress analysis for a particular engineering system.
description: Published in at http://dx.doi.org/10.1214/009053607000000163 the Annals of Statistics (http://www.imstat.org/aos/) by the Institute of Mathematical Statistics (http://www.imstat.org)
Effects of distinct ion temperatures on the head-on collision and phase shifts of dust acoustic one and multi-solitons in dusty plasmas
Creators: name: Alam, M. S.
name: Hafez, M. G.
name: Talukder, M. R.
name: Ali, M. Hossain
Publisher: name: arXiv
Year: 2016
Subjects: subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: The propagation characteristics and interactions between the dust acoustic (DA) one and multi solitons in an unmagnetized dusty plasmas composing negatively charged mobile dust, Boltzmann distributed electrons, nonextensive distributed cold and nonthermal distributed hot ions are studied. The well known extended Poincar Lighthill Kuo (PLK) method is employed to derive the two sided Korteweg de Vries (KdV) equations. The solutions of KdV equations are constructed using the Hirota method both for one and multi solitons. The phase shifts are determined for the interaction of one, two and three DA solitons. The effects of plasma parameters on the head on collision of DA one as well as multi solitons and their corresponding phase shifts are investigated.
description: 18 pages, 5 figures
Unparticles in Gluodynamics
Creators: name: Alan, A. T.
Publisher: name: arXiv
Year: 2007
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The virtual effects of unparticle physics on the two-gluon jets production are explored for CERN LHC. It is found that depending on the scale dimension, unparticles can give rise to substantial enhancements in the transverse momentum and pseudo-rapidity distributions of hadronic cross sections, up to a factor of four-orders of magnitude.
description: 5 pages, 5 figures, introduction has been changed, tensor propagator in CFT has been included, references added
Cost-Sharing Mechanisms for Network Design
Creators: name: Gupta, Anupam
name: Aravind  Srinivasan
name: Tardos, Eva
Publisher: name: Carnegie Mellon University
Year: 2006
Subjects: subject: 89999 Information and Computing Sciences not elsewhere classified
subject: FOS: Computer and information sciences

description: Computer Science Department
Additional file 1 of Knowledge gaps and national research priorities for COVID-19 in Iran
Creators: name: Yazdizadeh, Bahareh
name: Ehsani-Chimeh, Elham
name: Zendehdel, Kazem
name: Mobinizadeh, Mohammadreza
name: Mesgarpour, Bita
name: Fakoorfard, Zeinab
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: The methodological details of Multiple Criteria Decision Making Model (MCDM).
Robust Quantum Entanglement Generation and Generation-plus-Storage Protocols with Spin Chains
Creators: name: Estarellas, Marta P.
name: D'Amico, Irene
name: Spiller, Timothy P.
Publisher: name: arXiv
Year: 2016
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Reliable quantum communication/processing links between modules are a necessary building block for various quantum processing architectures. Here we consider a spin chain system with alternating strength couplings and containing three defects, that impose three domain walls between topologically distinct regions of the chain. We show that -- in addition to its useful, high fidelity, quantum state transfer properties -- an entangling protocol can be implemented in this system, with optional localisation and storage of the entangled states. We demonstrate both numerically and analytically that, given a suitable initial product-state injection, the natural dynamics of the system produces a maximally entangled state at a given time. We present detailed investigations of the effects of fabrication errors, analyzing random static disorder both in the diagonal and off-diagonal terms of the system Hamiltonian. Our results show that the entangled state formation is very robust against perturbations of up to $\sim10\%$ the weaker chain coupling, and also robust against timing injection errors. We propose a further protocol which manipulates the chain in order to localise and store each of the entangled qubits. The engineering of a system with such characteristics would thus provide a useful device for quantum information processing tasks involving the creation and storage of entangled resources.
description: 7 pages, 6 figures
Additional file 1 of Exploring molecular spectrum in thai patients with maple syrup urine disease: unveiling a common variant
Creators: name: Lakkhana, Panisara
name: Tim-Aroon, Thipwimol
name: Khongkraparn, Arthaporn
name: Noojarern, Saisuda
name: Wongkittichote, Parith
name: Wichajarn, Khunton
name: Kuptanon, Chulaluck
name: Boonyawat, Boonchai
name: Suphapeetiporn, Kanya
name: Wejaphikul, Karn
name: Seo, GoHun
name: Wattanasirichaigoon, Duangrurdee
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1.
Friendship in aphasia (Therrien et al., 2021)
Creators: name: Therrien, Michelle C. S.
name: Madden, Elizabeth B.
name: Bislick, Lauren
name: Wallace, Sarah E.
Publisher: name: ASHA journals
Year: 2021
Subjects: subject: Language
subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine

description: Purpose: Speech-language pathologists (SLPs) who work with people with aphasia focus on assessment and intervention to support improved communication outcomes for their clients. Friendship, a key component of quality of life, often depends on communicative interaction, and many people with aphasia report having reduced social circles. The purpose of this study was to explore the perceptions of SLPs working with clients with aphasia on their role in supporting friendship development and maintenance.Method: An online survey composed of questions addressing SLP perspectives and goal setting, assessment, and treatment practices related to aphasia and friendship was distributed to SLPs across the United States. Survey data were analyzed using both quantitative and qualitative methods.Results: Forty-seven SLPs completed the survey. While many SLPs reported that the friendships of their clients with aphasia were impacted by aphasia and that it was within their scope of practice to support friendship development and maintenance, many did not specifically assess or target friendship and friendship outcomes in the treatment plan. SLPs identified barriers and facilitators to focusing on friendship within the context of speech and language therapy.Conclusions: Findings suggest the majority of participating SLPs were interested in addressing friendship with clients with aphasia; however, they experienced barriers in practice. Further examination of SLP perspectives and clinical practice regarding friendship and aphasia is warranted. Additionally, research investigating effective assessment and therapeutic methods that target friendship in aphasia is needed to support clinical practice and the well-being of clients with aphasia.
Supplemental Material S1. SLP Aphasia Survey.
Therrien, M. C. S., Madden, E. B., Bislick, L., & Wallace, S. E. (2021). Aphasia and friendship: The role and perspectives of speech-language pathologists. American Journal of Speech-Language Pathology. Advance online publication. https://doi.org/10.1044/2021_AJSLP-20-00370
Magnetogenesis, spectator fields and CMB signatures
Creators: name: Giovannini, Massimo
Publisher: name: arXiv
Year: 2007
Subjects: subject: Astrophysics (astro-ph)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: A viable class of magnetogenesis models can be constructed by coupling the kinetic term of the hypercharge to a spectator field whose dynamics does not affect the inflationary evolution. The magnetic power spectrum is explicitly related to the power spectrum of (adiabatic) curvature inhomogeneities when the quasi-de Sitter stage of expansion is driven by a single scalar degree of freedom. Depending upon the value of the slow-roll parameters, the amplitude of smoothed magnetic fields over a (comoving) Mpc scale can be as large as 0.01--0.1 nG at the epoch of the gravitational collapse of the protogalaxy. The contributions of the magnetic fields to the Sachs-Wolfe plateau and to the temperature autocorrelations in the Doppler region compare favourably with the constraints imposed by galactic magnetogenesis. Stimulating lessons are drawn on the interplay between magnetogenesis models and their possible CMB signatures.
description: 15 pages, 6 figures
Semi-analytic model of plasma-jet-driven magneto-inertial fusion
Creators: name: Langendorf, Samuel J.
name: Hsu, Scott C.
Publisher: name: arXiv
Year: 2016
Subjects: subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: A semi-analytic model for plasma-jet-driven magneto-inertial fusion is presented. Compressions of a magnetized plasma target by a spherically imploding plasma liner are calculated in one dimension (1D), accounting for compressible hydrodynamics and ionization of the liner material, energy losses due to conduction and radiation, fusion burn and alpha deposition, separate ion and electron temperatures in the target, magnetic pressure, and fuel burn-up. Results show 1D gains of 3-30 at spherical convergence ratio < 15 and 20-40 MJ of liner energy, for cases in which the liner thickness is 1 cm and the initial radius of a preheated magnetized target is 4 cm. Some exploration of parameter space and physics settings is presented. The yields observed suggest that there is a possibility of igniting additional dense fuel layers to reach high gain.
description: 12 pages, 11 figures, 4 tables, submitted for publication (2017)
Isoscalar and Isovector spin response in $sd-$ shell nuclei
Creators: name: Sagawa, H.
name: Suzuki, T.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: The spin magnetic dipole transitions and the neutron-proton spin-spin correlations in $sd-$shell even-even nuclei with $N=Z$ are investigated using shell model wave functions taking into accout enhanced isoscalar (IS) spin-triplet pairing as well as the effective spin operators. It was shown that the IS pairing and the effective spin operators gives a large quenching effect on the IV spin transitions to be consistent with observed data by $(p,p')$ experiments. On the other hand, the observed IS spin strength show much smaller quenching effect than expected by the calculated results. The IS pairing gives a substantial quenching effect on the spin magnetic dipole transitions, especially on the isovector (IV) ones. Consequently, an enhanced isoscalar spin-triplet pairing interaction enlarges the proton-neutron spin-spin correlation deduced from the difference between the isoscalar (IS) and the IV sum rule strengths. The beta-decay rates and the IS magnetic moments of $sd-$shell are also examined in terms of the IS pairing as well as the effective spin operators.
description: 13pages, 12figures, 3tables. arXiv admin note: text overlap with arXiv:1607.05881
Additional file 1 of In-depth biological analysis of alteration in Plasmodium knowlesi-infected red blood cells using a noninvasive optical imaging technique
Creators: name: Firdaus, Moh Egy Rahman
name: Muh, Fauzi
name: Park, Ji-Hoon
name: Lee, Seong-Kyun
name: Na, Sung-Hun
name: Park, Won-Sun
name: Ha, Kwon-Soo
name: Han, Jin-Hee
name: Han, Eun-Taek
Publisher: name: figshare
Year: 2022
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer

description: Additional file 1: Figure S1. Morphology of malaria parasite during synchronization. (a–c) Plasmodium knowlesi culture, (d–f) P. falciparum culture. (a and b) mixed stages of parasites, (b and e) synchronized schizont stage, and (d and f) newly invaded ring stage. Plasmodium knowlesi synchronized schizont requires 10 h to reach the ring stage, while P. falciparum needs approximately 18 h.
LINC00305 represses miR-124 expression to trigger inflammatory insults in the presence of lipopolysaccharide
Creators: name: Li, Xiaoyan
name: Yu, Manqiu
name: Han, Liang
name: Chen, Lei
name: Zhang, Daxue
name: Zhou, Guannan
name: Zhao, Qiang
name: Sun, Taitao
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: The anti-inflammatory function of microRNA-124 (miR-124) has been a matter of extensive studies in the last few years. Although LINC00305 regulates biological activities by acting as a miR sponge, it is still unexplored whether LINC00305 is involved in inflammation by regulating miR-124. Cell viability and apoptosis were evaluated with commercial kits, cell counting kit-8 (CCK-8) and Annexin V-fluorescein isothiocyanate (FITC) kit, respectively. LINC00305, miR-124 and mRNA levels were quantified by quantitative reverse transcription PCR (qRT-PCR). Protein level was assessed with Western blot assay and enzyme-linked immunosorbent assay (ELISA). The expression of LINC00305 was up-regulated by lipopolysaccharide (LPS). LINC00305 overexpression further suppressed the cell viability, promoted apoptosis and induced inflammation in LPS-treated ATDC5 cells while its silence enhanced the cell viability, inhibited apoptosis and ameliorated inflammation. miR-124 was negatively regulated by LINC00305 and its overexpression abolished the effects of LINC00305 in the presence of LPS. LINC00305 further triggered the Notch/nuclear factor kappa B (NF-κB) signalling pathway in LPS-treated ATDC5 cells and this activation was abrogated when ATDC5 cells overexpressed miR-124. LINC00305 might emerge as a novel suppressor for miR-124. LINC00305-caused miR-124 silence compromises ATDC5 cell viability and ultimately results in inflammatory insults by activating Notch/NF-κB pathway.
Self-Taught Convolutional Neural Networks for Short Text Clustering
Creators: name: Xu, Jiaming
name: Xu, Bo
name: Wang, Peng
name: Zheng, Suncong
name: Tian, Guanhua
name: Zhao, Jun
name: Xu, Bo
Publisher: name: arXiv
Year: 2017
Subjects: subject: Information Retrieval (cs.IR)
subject: Computation and Language (cs.CL)
subject: FOS: Computer and information sciences

description: Short text clustering is a challenging problem due to its sparseness of text representation. Here we propose a flexible Self-Taught Convolutional neural network framework for Short Text Clustering (dubbed STC^2), which can flexibly and successfully incorporate more useful semantic features and learn non-biased deep text representation in an unsupervised manner. In our framework, the original raw text features are firstly embedded into compact binary codes by using one existing unsupervised dimensionality reduction methods. Then, word embeddings are explored and fed into convolutional neural networks to learn deep feature representations, meanwhile the output units are used to fit the pre-trained binary codes in the training process. Finally, we get the optimal clusters by employing K-means to cluster the learned representations. Extensive experimental results demonstrate that the proposed framework is effective, flexible and outperform several popular clustering methods when tested on three public short text datasets.
description: 33 pages, accepted for publication in Neural Networks
Additional file 1 of Interplay between WNT/PI3K-mTOR axis and the microbiota in APC-driven colorectal carcinogenesis: data from a pilot study and possible implications for CRC prevention
Creators: name: Di Paola, Floriana Jessica
name: Alquati, Chiara
name: Conti, Gabriele
name: Calafato, Giulia
name: Turroni, Silvia
name: D’Amico, Federica
name: Ceccarelli, Claudio
name: Buttitta, Francesco
name: Bernardi, Alice
name: Cuicchi, Dajana
name: Poggioli, Gilberto
name: Turchetti, Daniela
name: Ferrari, Simona
name: Cannizzaro, Renato
name: Realdon, Stefano
name: Brigidi, Patrizia
name: Ricciardiello, Luigi
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: Supplementary Material 1
[Proceedings of the Supreme Court of British Columbia 1989-01-09]
Creators: name: British Columbia. Supreme Court
Publisher: name: Vancouver : United Reporting Service Ltd.
Year: 2013

description: In the Supreme Court of British Columbia, between: Delgamuukw, also known as Albert Tait, suing on his own behalf and on behalf of all the members of the House of Delgamuukw, and others, plaintiffs, and Her Majesty the Queen in right of the Province of British Columbia and the Attorney General of Canada, defendants: proceedings at trial.
title: ADCO, Troisième cartulaire de Saint-Étienne de Dijon (XVIe), Cart. 23 (G 127), 310 folios, f. 00288
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2011
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Troisième cartulaire de Saint-Étienne de Dijon (XVIe), Archives départementales de la Côte-d'Or, Cart. 23 (G 127), 310 folios, f. 00288, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Troisième cartulaire de Saint-Étienne de Dijon (XVIe), Archives départementales de la Côte-d'Or, Cart. 23 (G 127), 310 folios, f. 00288, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
Cost-effective Outbreak Detection in Networks
Creators: name: Leskovec, Jure
name: Krause, Andreas
name: Guestrin, Carlos
name: Faloutsos, Christos
name: Vanbriesen, Jeanne
name: Glance, Natalie
Publisher: name: Carnegie Mellon University
Year: 2004
Subjects: subject: 89999 Information and Computing Sciences not elsewhere classified
subject: FOS: Computer and information sciences

description: Given a water distribution network, where should we place sensors to quickly detect contaminants? Or, which blogs should we read to avoid missing important stories? These seemingly different problems share common structure: Outbreak detection can be modeled as selecting nodes (sensor locations, blogs) in a network, in order to detect the spreading of a virus or information as quickly as possible. We present a general methodology for near optimal sensor placement in these and related problems. We demonstrate that many realistic outbreak detection objectives (e.g., detection likelihood, population affected) exhibit the property of “submodularity”. We exploit submodularity to develop an efficient algorithm that scales to large problems, achieving near optimal placements, while being 700 times faster than a simple greedy algorithm. We also derive online bounds on the quality of the placements obtained by any algorithm. Our algorithms and bounds also handle cases where nodes (sensor locations, blogs) have different costs. We evaluate our approach on several large real-world problems, including a model of a water distribution network from the EPA, and real blog data. The obtained sensor placements are provably near optimal, providing a constant fraction of the optimal solution. We show that the approach scales, achieving speedups and savings in storage of several orders of magnitude. We also show how the approach leads to deeper insights in both applications, answering multicriteria trade-off, cost-sensitivity and generalization questions.
Additional file 2 of Assessment of inverse publication bias in safety outcomes: an empirical analysis
Creators: name: Xing, Xing
name: Zhu, Jianan
name: Shi, Linyu
name: Xu, Chang
name: Lin, Lifeng
Publisher: name: figshare
Year: 2024
Subjects: subject: Statistics
subject: FOS: Mathematics

description: Additional file 2: Fig. S1. Proportion of significant or non-significant results in different groups. Fig. S2. Venn diagram depicting four types of quantitative assessments of non-significant results. Fig. S3. Venn diagram depicting four types of quantitative assessments of significant results. Fig. S4. Proportion of changes in significance across different groups.
Microsystem Product Development
Creators: name: Polosky, M. -A.
name: Garcia, E. -J.
Publisher: name: arXiv
Year: 2007
Subjects: subject: Other Computer Science (cs.OH)
subject: FOS: Computer and information sciences

description: Over the last decade the successful design and fabrication of complex MEMS (MicroElectroMechanical Systems), optical circuits and ASICs have been demonstrated. Packaging and integration processes have lagged behind MEMS research but are rapidly maturing. As packaging processes evolve, a new challenge presents itself, microsystem product development. Product development entails the maturation of the design and all the processes needed to successfully produce a product. Elements such as tooling design, fixtures, gages, testers, inspection, work instructions, process planning, etc., are often overlooked as MEMS engineers concentrate on design, fabrication and packaging processes. Thorough, up-front planning of product development efforts is crucial to the success of any project.
description: Submitted on behalf of TIMA Editions (http://irevues.inist.fr/tima-editions)
COSMOS: A Compiled Simulator for MOS Circuits
Creators: name: Bryant, Randal E.
name: Beatty, Derek
name: Brace, Karl
name: Kyeongsoon  Cho
name: Sheffler, Thomas
Publisher: name: Carnegie Mellon University
Year: 1976
Subjects: subject: 89999 Information and Computing Sciences not elsewhere classified
subject: FOS: Computer and information sciences

description: The COSMOS simulator provides fast and accurate switch-level modeling of MOS digital circuits. It attains high performance by preprocessing the transistor network into a functionally equivalent Boolean representation. This description, produced by the symbolic analyzer ANAMOS, captures all aspects of switch-level networks including bidirectional transistors, stored charge, different signal strengths, and indeterminate (X) logic values. The LGCC program translates the Boolean representation into a set of machine language evaluation procedures and initialized data structures. These procedures and data structures are compiled along with code implementing the simulation kernel and user interface to produce the simulation program. The simulation program runs an order of magnitude faster than our previous simulator MOSSIM II.
Additional file 1 of Serum urea acid and urea nitrogen levels are risk factors for maternal and fetal outcomes of pregnancy: a retrospective cohort study
Creators: name: Wu, Lanlan
name: Liu, Yao
name: Liu, Zengyou
name: Chen, Hengying
name: Shen, Siwen
name: Wei, Yuanhuan
name: Sun, Ruifang
name: Deng, Guifang
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: Additional file 1. Supplementary Table 1. Timeline of information collection for pregnant women.
Additional file 1 of HIF-1α-dependent miR-424 induction confers cisplatin resistance on bladder cancer cells through down-regulation of pro-apoptotic UNC5B and SIRT4
Creators: name: Yu, Meng
name: Ozaki, Toshinori
name: Sun, Dan
name: Xing, Haotian
name: Wei, Baojun
name: An, Jun
name: Yang, Jieping
name: Gao, Ying
name: Liu, Shuangjie
name: Kong, Chuize
name: Zhu, Yuyan
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Environmental Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Hematology
subject: Computational Biology

description: Additional file 1: Supplementary Table 1. Sequences of oligonucleotide primers used for qPCR in the study. Supplementary Table 2. Clinicopathological characters of the patients with bladder cancer in our dataset.
[Proceedings of the Supreme Court of British Columbia 1989-01-10]
Creators: name: British Columbia. Supreme Court
Publisher: name: Vancouver : United Reporting Service Ltd.
Year: 2013

description: In the Supreme Court of British Columbia, between: Delgamuukw, also known as Albert Tait, suing on his own behalf and on behalf of all the members of the House of Delgamuukw, and others, plaintiffs, and Her Majesty the Queen in right of the Province of British Columbia and the Attorney General of Canada, defendants: proceedings at trial.
Tolerating Disasters with Hierarchical Consensus
Creators: name: Yahyaoui, Wassim
name: Bruneau-Queyreix, Joachim
name: Decouchant, Jérémie
name: Völp, Marcus
Publisher: name: arXiv
Year: 2025
Subjects: subject: Distributed, Parallel, and Cluster Computing (cs.DC)
subject: FOS: Computer and information sciences

description: Geo-replication provides disaster recovery after catastrophic accidental failures or attacks, such as fires, blackouts or denial-of-service attacks to a data center or region. Naturally distributed data structures, such as Blockchains, when well designed, are immune against such disruptions, but they also benefit from leveraging locality. In this work, we consolidate the performance of geo-replicated consensus by leveraging novel insights about hierarchical consensus and a construction methodology that allows creating novel protocols from existing building blocks. In particular we show that cluster confirmation, paired with subgroup rotation, allows protocols to safely operate through situations where all members of the global consensus group are Byzantine. We demonstrate our compositional construction by combining the recent HotStuff and Damysus protocols into a hierarchical geo-replicated blockchain with global durability guarantees. We present a compositionality proof and demonstrate the correctness of our protocol, including its ability to tolerate cluster crashes. Our protocol -ORION 1 -achieves a 20% higher throughput than GeoBFT, the latest hierarchical Byzantine Fault-Tolerant (BFT) protocol.
Chern-Simons Gravities (CSG) and Gravitational Chern-Simons (GCS) densities in all dimensions
Creators: name: Tchrakian, D. H.
Publisher: name: arXiv
Year: 2017
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Chern-Simons gravities and gravitational Chern-Simons densities are constructed using the non-Abelian Yang-Mills Chern-Simons densities. As such, they are defined only in odd dimensions. We propose instead an analogous construction employing what we term Higgs--Chern-Simons (HCS) densities, which are defined in $all\ dimensions$. This enables the definition of extended versions of Chern-Simons gravities in all dimensions. Employing the same prescription, the definition of gravitational Chern-Simons densities is extended to all even dimensions, but only to $4p-1$ $odd$ dimensions. All our considerations are restricted to $vacuum$ fields.
description: 15 pages. Talk given at XVII International Conference on Symmetry Methods in Physics (Symphys XVII), Yerevan, Armenia, 09-15 July, 2017. Replacement includes added references and explanations
Parasitic Effects Reduction for Wafer-Level Packaging of RF-Mems
Creators: name: Iannacci, J.
name: Tian, Jason
name: Sinaga, S.
name: Gaddi, R.
name: Gnudi, A.
name: Bartek, M.
Publisher: name: arXiv
Year: 2007
Subjects: subject: Other Computer Science (cs.OH)
subject: FOS: Computer and information sciences

description: In RF-MEMS packaging, next to the protection of movable structures, optimization of package electrical performance plays a very important role. In this work, a wafer-level packaging process has been investigated and optimized in order to minimize electrical parasitic effects. The RF-MEMS package concept used is based on a wafer-level bonding of a capping silicon substrate to an RF-MEMS wafer. The capping silicon substrate resistivity, substrate thickness and the geometry of through-substrate electrical interconnect vias have been optimized using finite-element electromagnetic simulations (Ansoft HFSS). Test structures for electrical characterization have been designed and after their fabrication, measurement results will be compared with simulations.
description: Submitted on behalf of TIMA Editions (http://irevues.inist.fr/tima-editions)
[Proceedings of the Supreme Court of British Columbia 1989-01-11]
Creators: name: British Columbia. Supreme Court
Publisher: name: Vancouver : United Reporting Service Ltd.
Year: 2013

description: In the Supreme Court of British Columbia, between: Delgamuukw, also known as Albert Tait, suing on his own behalf and on behalf of all the members of the House of Delgamuukw, and others, plaintiffs, and Her Majesty the Queen in right of the Province of British Columbia and the Attorney General of Canada, defendants: proceedings at trial.
Additional file 1 of Self-stigma in alcohol dependence scale: development and validity of the short form
Creators: name: Rieckhof, Sophia
name: Leonhard, Anya
name: Schindler, Stephanie
name: Lüders, Juliane
name: Tschentscher, Nicole
name: Speerforck, Sven
name: Corrigan, Patrick W.
name: Schomerus, Georg
Publisher: name: figshare
Year: 2024
Subjects: subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Supplementary Material 1
Correlation Clustering
Creators: name: Bansal, Nikhil
name: Avrim  Blum
name: Shuchi  Chawla
Publisher: name: Carnegie Mellon University
Year: 1988
Subjects: subject: 89999 Information and Computing Sciences not elsewhere classified
subject: FOS: Computer and information sciences

description: We consider the following clustering problem: we have a complete graph on n vertices (items), where each edge (u, v) is labeled either + or – depending on whether u and v have been deemed to be similar or different. The goal is to produce a partition of the vertices (a clustering) that agrees as much as possible with the edge labels. That is, we want a clustering that maximizes the number of + edges within clusters, plus the number of – edges between clusters (equivalently, minimizes the number of disagreements: the number of – edges inside clusters plus the number of + edges between clusters). This formulation is motivated from a document clustering problem in which one has a pairwise similarity function f learned from past data, and the goal is to partition the current set of documents in a way that correlates with f as much as possible; it can also be viewed as a kind of 'agnostic learning' problem. An interesting feature of this clustering formulation is that one does not need to specify the number of clusters k as a separate parameter, as in measures such as k-median or min-sum or min-max clustering. Instead, in our formulation, the optimal number of clusters could be any value between 1 and n, depending on the edge labels. We look at approximation algorithms for both minimizing disagreements and for maximizing agreements. For minimizing disagreements, we give a constant factor approximation. For maximizing agreements we give a PTAS, building on ideas of Goldreich, Goldwasser, and Ron (1998) and de la Veg (1996). We also show how to extend some of these results to graphs with edge labels in [–1, +1], and give some results for the case of random noise.
Additional file 1 of An open-label phase 2 trial to assess the efficacy, safety and pharmacokinetics of lanthanum carbonate in hyperphosphatemic children and adolescents with chronic kidney disease undergoing dialysis
Creators: name: Wasilewska, Anna
name: Murray, Rose Ann
name: Sundberg, Aimee
name: Uddin, Sharif
name: Achenbach, Heinrich
name: Shavkin, Aleksey
name: Szabó, Tamás
name: Vergani, Andrea
name: Umeh, Obi
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Marine Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 1: Figure 1. Proportion of patients who did not have serum phosphorus data available or who did not satisfy other eligibility criteriaa after 8 weeks of CC followed by 8 weeks of LC (A) and after at least 8 weeks of LC (B); these patients were thus excluded from the efficacy analyses (per-protocol sets 1 and 2).
Additional file 1 of Hybridization has localized effect on genetic variation in closely related pine species
Creators: name: Szczepański, Sebastian
name: Łabiszak, Bartosz
name: Lasek, Martyna
name: Wachowiak, Witold
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology

description: Supplementary Material 1
title: ADCO, Cinquième cartulaire de Saint-Étienne de Dijon (1664), Cart. 28 (G 132), 258 folios, f. 00369
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: Petot, Frédéric
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Cinquième cartulaire de Saint-Étienne de Dijon (1664), Archives départementales de la Côte-d'Or, Cart. 28 (G 132), 258 folios, f. 00369, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cinquième cartulaire de Saint-Étienne de Dijon (1664), Archives départementales de la Côte-d'Or, Cart. 28 (G 132), 258 folios, f. 00369, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
Additional file 2 of An open-label phase 2 trial to assess the efficacy, safety and pharmacokinetics of lanthanum carbonate in hyperphosphatemic children and adolescents with chronic kidney disease undergoing dialysis
Creators: name: Wasilewska, Anna
name: Murray, Rose Ann
name: Sundberg, Aimee
name: Uddin, Sharif
name: Achenbach, Heinrich
name: Shavkin, Aleksey
name: Szabó, Tamás
name: Vergani, Andrea
name: Umeh, Obi
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Marine Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 2: Table 1. List of center that participated in this study.