cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Continuously parametrized quantum simulation of molecular electron transfer reactions
Creators: name: Schlawin, Frank
name: Gessner, Manuel
name: Buchleitner, Andreas
name: Schaetz, Tobias
name: Skourtis, Spiros S
Publisher: name: arXiv
Year: 2020
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: A comprehensive description of molecular electron transfer reactions is essential for our understanding of fundamental phenomena in bio-energetics and molecular electronics. Experimental studies of molecular systems in condensed-phase environments, however, face difficulties to independently control the parameters that govern the transfer mechanism with high precision. We show that trapped-ion experiments instead allow to reproduce and continuously connect vastly different regimes of molecular charge transfer through precise tuning of, e.g., phonon temperature, electron-phonon interactions, and electronic couplings. Such a setting allows not only to reproduce widely-used transport models, such as Marcus theory. It also provides access to transfer regimes that are unattainable for molecular experiments, while controlling and measuring the relevant observables on the level of individual quanta. Our numerical simulations predict an unconventional quantum transfer regime, featuring a transition from quantum adiabatic- to resonance-assisted transfer as a function of the donor-acceptor energy gap, that can be reached by increasing the electronic coupling at low temperatures. Trapped ion-based quantum simulations thus promise to enhance our microscopic understanding of molecular electron transfer processes, and may help to reveal efficient design principles for synthetic devices.
description: 11 pages, 6 figures
PRISMA-P Checklist for Large to massive rotator cuff tendon tears: a protocol for a systematic review investigating the effectiveness of exercise therapy on pain, disability and quality of life
Creators: name: Fahy, Kathryn
Publisher: name: Zenodo
Year: 2021
Subjects: Shoulder, Rotator Cuff Tendon Tear, Exercise, Physiotherapy, Rehabilitation, Conservative Management/ Intervention, Non-surgical management/ Intervention

description: PRISMA-P Checklist for the Systematic Review protocol titled : Large to massive rotator cuff tendon tears: a protocol for a systematic review investigating the effectiveness of exercise therapy on pain, disability and quality of life
What can biologists say about galaxy evolution ?
Creators: name: Fraix-Burnet, Didier
name: Choler, Philippe
name: Douzery, Emmanuel J. P.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: It is possible to borrow from a topic of biology called phylogenetic systematics, concepts and tools for a logical and objective classification of galaxies. It is based on observable properties of objects - characters - either qualitative (like morphology) or quantitative (like luminosity, mass or spectrum). Distance analysis can readily be performed using a method called phenetics and based on characters. But the most promising approach is cladistics. It makes use of characters that can exist in at least two states, one being ancestral and the other one derived. Objects are gathered depending on the derived states they share. We illustrate a first application of this method to astrophysics, that we name astrocladistics, with dwarf galaxies from the Local Group.
description: Kiel Euroconference (2002) "The Evolution of Galaxies III. From Simple Approaches to Self-Consistent Models", Kluwer Academic Publishers (in press)
The Transportation Of Trifunctors In The Tricategory Of Bicategories
Creators: name: Smith, Andrew
Publisher: name: University of Leicester
Year: 2020
Subjects: Uncategorized

description: Tricategories, as the construction for the most general sort of weak 3-category being given by explicit coherence axioms, are a particularly important structure in the study of low-dimensional higher category theory. As such the correct notion of a morphism between tricategories, the Trifunctor, is also an important object of interest. Just as many constructions in mathematics can be realised by using functors between appropriate categories, these constructions can be generalised to the 3-dimensional level by using trifunctors between the appropriate tricategories. Of particular interest are trifunctors into the tricategory of bicategories. Given a mathematical structure laid on top of a base object, it can be useful to transport that structure from the original object to a new object across a suitable sort of equivalence. The collection of trifunctors between two tricategories forms a tricategory of its own. So does the collection of functions from the objects of the source tricategory to the objects of the target tricategory, which form the object level of any trifunctor. Therefore in this case the appropriate notion of equivalence is that of biequivalence, and we would hope to be able to transport the structure of a trifunctor across a collection of biequivalences at the object level. While the transport of structure at lower dimensions is achieved using monadic methods, at the general 3-dimensional level these haven't been developed. This thesis aims to provide a method for transporting the structure of a trifunctor into the tricategory of bicategories across object-indexed biequivalences. We do this by working directly from the definition of trifunctor: by constructing the data needed for the new trifunctor from the data of the original trifunctor and the biequivalences, and then proving that the axioms hold using diagram manipulation techniques.
Additional file 2 of A systematic review of the incidence, risk factors and prognosis of acute exacerbation of systemic autoimmune disease-associated interstitial lung disease
Creators: name: Kamiya, Hiroyuki
name: Ogee Mer Panlaqui
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 2. Clinical information that was not selected as potential risk or prognostic factors
Additional file 3 of A systematic review of the incidence, risk factors and prognosis of acute exacerbation of systemic autoimmune disease-associated interstitial lung disease
Creators: name: Kamiya, Hiroyuki
name: Ogee Mer Panlaqui
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 3. Preferred Reporting Items for Systematic Review and Meta-Analysis
Early SPI/INTEGRAL contraints on the morphology of the 511 keV line emission in the 4th galactic quadrant
Creators: name: Knodlseder, J.
name: Lonjou, V.
name: Jean, P.
name: Allain, M.
name: Mandrou, P.
name: Roques, J. -P.
name: Skinner, G. K.
name: Vedrenne, G.
name: von Ballmoos, P.
name: Weidenspointner, G.
name: Caraveo, P.
name: Cordier, B.
name: Schonfelder, V.
name: Teegarden, B. J.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We provide first constraints on the morphology of the 511 keV line emission from the galactic centre region on basis of data taken with the spectrometer SPI on the INTEGRAL gamma-ray observatory. The data suggest an azimuthally symmetric galactic bulge component with FWHM of ~9 deg with a 2 sigma uncertainty range covering 6-18 deg. The 511 keV line flux in the bulge component amounts to (9.9+4.7-2.1) 10e-4 ph cm-2 s-1. No evidence for a galactic disk component has been found so far; upper 2 sigma flux limits in the range (1.4-3.4) 10e-3 ph cm-2 s-1 have been obtained that depend on the assumed disk morphology. These limits correspond to lower limits on the bulge-to-disk ratio of 0.3-0.6.
description: 5 pages, 3 figures, accepted for publication in A&A
Lyle Creelman (1908-2007) : forging nursing’s new frontiers
Creators: name: Field, Leslie
name: Armstrong-Reid, Susan
name: Kiernan, Clare
name: Boschma, Geertje
name: Esson, Lynne
Publisher: name: The University of British Columbia
Year: 2015

description: This DVD is a biography of Lyle Creelman, a graduate of UBC School of Nursing and leader in public health nursing from the 1930s to 1970s. Containing excerpts from interviews with Creelman, personal and public photographs, passages from her writing, and newspaper clippings, this DVD traces her education (1908-1936), early career (1937-1946), international work with the World Health Organization as a nursing consultant (1949-1968), and retirement and legacy (1969-2007). The DVD was produced by the School of Nursing at the occasion of the 90th anniversary of the School’s founding. It was originally part of a larger exhibit celebrating Creelman’s career. From the DVD: “This special display for May 2009 in the Irving K. Barber Rare Books/University Archives Reading Room honours Lyle Creelman’s exceptional contributions, and is sponsored by the UBC University Archives and the UBC School of Nursing.”`
Additional file 7: of Cognitive training for children and adolescents with fragile X syndrome: a randomized controlled trial of Cogmed
Creators: name: Hessl, David
name: Schweitzer, Julie
name: Nguyen, Danh
name: McLennan, Yingratana
name: Johnston, Cindy
name: Shickman, Ryan
name: Chen, Yanjun
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: Mental Health
subject: Computational Biology

description: Table S6. Test-retest reliability (intraclass correlation) of outcome measures used in the study (during 3-month follow-up period without training). (DOCX 14 kb)
Intrinsic alignment-lensing interference as a contaminant of cosmic shear
Creators: name: Hirata, Christopher M.
name: Seljak, Uros
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Cosmic shear surveys have great promise as tools for precision cosmology, but can be subject to systematic errors including intrinsic ellipticity correlations of the source galaxies. The intrinsic alignments are believed to be small for deep surveys, but this is based on intrinsic and lensing distortions being uncorrelated. Here we show that the gravitational lensing shear and intrinsic shear need not be independent: correlations between the tidal field and the intrinsic shear cause the intrinsic shear of nearby galaxies to be correlated with the gravitational shear acting on more distant galaxies. We estimate the magnitude of this effect for two simple intrinsic alignment models: one in which the galaxy ellipticity is linearly related to the tidal field, and one in which it is quadratic in the tidal field as suggested by tidal torque theory. The first model predicts a gravitational-intrinsic (GI) correlation that can be much greater than the intrinsic-intrinsic (II) correlation for broad redshift distributions, and that remains when galaxies pairs at similar redshifts are rejected. The second model, in its simplest form, predicts no gravitational-intrinsic correlation. In the first model and assuming a normalization consistent with recently claimed detections of intrinsic correlations we find that the GI correlation term can exceed the usual II term by >1 order of magnitude and the intrinsic correlation induced B-mode by 2 orders of magnitude. These interference effects can suppress the lensing power spectrum for a single broad redshift bin by of order ~10% at z_s=1 and ~30% at z_s=0.5.
description: 10 pages, 3 figs; several factors of a fixed from published version (listed in erratum), no changes to conclusions
Activity time series of old stars from late F to early K. IV. Limits of the correction of radial velocities using chromospheric emission
Creators: name: Meunier, Nadège
name: Lagrange, Anne-Marie
name: Cuzacq, Sylvain
Publisher: name: arXiv
Year: 2019
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: Inhibition of the convective blueshift in active regions is a major contribution to the radial velocity variations, at least for solar-like stars. A common technique to correct for this component is to model the RV as a linear function of chromospheric emission, because both are strongly correlated with the coverage by plages. This correction is not perfect: the aim of the present study is to understand the limits of this correction and to improve it. We investigate these questions by analysing a large set of synthetic time series corresponding to old main sequence F6-K4 stars modelled using a consistent set of parameters. We focus here on the analysis of the correlation between time series, in particular between RV and chromospheric emission on different timescales. We also study the temporal variation for each time series. Inclination strongly impacts these correlations, as well as additional signals (granulation and supergranulation). Although RV and LogR'HK are often well correlated, a combination of geometrical effects (butterfly diagrams related to dynamo processes and inclination) and activity level variations over time create an hysteresis pattern during the cycle, which produces a departure from an excellent correlation: for a given activity level, the RV is higher or lower during the ascending phase compared to the descending phase of the cycle depending on inclination, with a reversal for inclinations about 60 deg from pole-on. This hysteresis is also observed for the Sun and other stars. This property is due to the spatio-temporal distribution of the activity pattern and to the difference in projection effects of the RV and chromospheric emission. These results allow us to propose a new method which significantly improves the correction for long timescales, and could be crucial to improving detection rates of planets in the habitable zone around F6-K4 stars.
description: Paper accepted in Astronomy and astrophysics, 15 pages
Dialectics of Humanism: Thematic Readings of the Literature of the Vietnam and Iraq Wars
Creators: name: Alzahrani, Sara A.
Publisher: name: University of Leicester
Year: 2020
Subjects: Uncategorized

description: Since ultimate military failure in the Vietnam War (1964–75), the United States has changed its management of wars, making full use of advanced military technology to carry out small-scale wars and continue imposing its global dominance without risking involvement in military and political quagmires. Shedding the spectre of the Vietnam War, however, proved particularly elusive at the onset of the Iraq War (2003-11) and cultural commentators have questioned if Iraq War has become another Vietnam in terms of a seismic culture change. While ample research has studied the changes in military engagement and the emergence of “postmodern combat” after the Vietnam War, scant discussion has been offered on the role of the two wars in recontextualizing the human discourse.This thesis steers away from the rigid analysis which defines the contemporary scholarly approach to both wars and instead pays special attention to the insider perspectives of veterans to better understand the changing conception of “the human” through the prism of war. Taking into consideration the central role that Vietnam War played in creating postmodern confusion and disillusionment, the main objective of the thesis is to thoroughly examine Iraq War narratives to develop a discussion concerning the ways in which veterans extend, subvert or transcend the postmodern politics that informed Vietnam War narratives.The thesis adopts a thematic-based analysis of cultural texts from both wars in order to identify veterans’ contrasting responses to the militarization of the body (chapter 2), the mental and physical trauma that ensues from war disabling injuries (chapter 3), the hyper-masculine military culture (chapter 4), and the long-held strategy to dehumanize the enemy (chapter 5). It argues that war narratives depart from traditional war templates, beginning in Vietnam and then more fully in Iraq, by presenting emerging posthuman concepts such as relational embodiments, psychological resilience, gender fluidity and worldly encounters. In spite of the similarities between the Vietnam and Iraq wars that this thesis documents, it also identifies and explores notable differences relating to social and historical particularities that shaped each war and each era.
EFT of Interacting Spin-2 Fields
Creators: name: Alberte, Lasma
name: de Rham, Claudia
name: Momeni, Arshia
name: Rumbutis, Justinas
name: Tolley, Andrew J.
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We consider the effective field theory of multiple interacting massive spin-2 fields. We focus on the case where the interactions are chosen so that the cutoff is the highest possible, and highlight two distinct classes of theories. In the first class, the mass eigenstates only interact through potential operators that carry no derivatives in unitary gauge at leading order. In the second class, a specific kinetic mixing between the mass eigenstates is included non-linearly. Performing a decoupling and ADM analysis, we point out the existence of a ghost present at a low scale for the first class of interactions. For the second class of interactions where kinetic mixing is included, we derive the full $Λ_3$ decoupling limit and confirm the absence of any ghosts. Nevertheless both formulations can be used to consistently describe an EFT of interacting massive spin-2 fields which, for a suitable technically natural tuning of the EFT, have the same strong coupling scale $Λ_3$. We identify the generic form of EFT corrections in each case. By using Galileon Duality transformations for the specific case of two massive spin-2 fields with suitable couplings, the decoupling limit theory is shown to be a bi-Galileon.
description: 39 pages + appendices, 1 figure
Utricularia subulata Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Lamiales
Lentibulariaceae
Utricularia
Utricularia subulata

description: Utricularia subulata Linnaeus, Species Plantarum 1: 18. 1753. "Habitat in Virginia." RCN: 148. Lectotype (Taylor in Kew Bull. 18: 81. 1964): Clayton 31 (BM-000032596). Current name:  Utricularia subulata L. (Lentibulariaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part U), pp. 906-910 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 909, DOI: 10.5281/zenodo.291971
Additional file 4 of A systematic review of the incidence, risk factors and prognosis of acute exacerbation of systemic autoimmune disease-associated interstitial lung disease
Creators: name: Kamiya, Hiroyuki
name: Ogee Mer Panlaqui
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 4. Meta-analysis of Observational Studies in Epidemiology statement
Gauusian quadrature for multiple orthogonal polynomials
Creators: name: Coussement, Jonathan
name: Van Assche, Walter
Publisher: name: arXiv
Year: 2004
Subjects: subject: Classical Analysis and ODEs (math.CA)
subject: FOS: Mathematics
subject: 41A55, 65D32

description: We study multiple orthogonal polynomials of type I and type II which have orthogonality conditions with respect to r measures. These polynomials are connected by their recurrence relation of order r+1. First we show a relation with the eigenvalue problem of a banded lower Hessenberg matrix L_n, containing the recurrence coefficients. As a consequence, we easily find that the multiple orthogonal polynomials of type I and type II satisfy a generalized Christoffel-Darboux identity. Furthermore, we explain the notion of multiple Gaussian quadrature (for proper multi-indices), which is an extension of the theory of Gaussian quadrature for orthogonal polynomials and was introduced by C. F. Borges. In particular we show that the quadrature points and quadrature weights can be expressed in terms of the eigenvalue problem of L_n.
description: 16 pages
Fast and robust two-qubit gates for scalable ion trap quantum computing
Creators: name: Garcia-Ripoll, J. J.
name: Zoller, P.
name: Cirac, J. I.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We propose a new concept for a two-qubit gate operating on a pair of trapped ions based on laser coherent control techniques. The gate is insensitive to the temperature of the ions, works also outside the Lamb-Dicke regime, requires no individual addressing by lasers, and can be orders of magnitude faster than the trap period.
Explosion Energies, Nickel Masses, and Distances of Supernovae of Type IIP
Creators: name: Nadyozhin, D. K.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The hydrodynamical modelling of Type II plateau supernova light curves predicts a correlation between three observable parameters (the plateau duration, the absolute magnitude and photospheric velocity at the middle of the plateau) on the one side and three physical parameters (the explosion energy E, the mass of the envelope expelled M, and the presupernova radius R) on the other side. The correlation is used, together with adopted EPM distances, to estimate E, M, and R for a dozen of well-observed SNe IIP. For this set of supernovae, the resulting value of E varies within a factor of 6 [0.5< E/(10^51 erg)<3], whereas the envelope mass remains within the limits 10< M/M_sun <30. The presupernova radius is typically (200-600)R_sun, but can exceed 1000R_sun for the brightest supernovae (e.g., SN 1992am). A new method of determining the distance of SNe IIP is proposed. It is based on the assumption of a correlation between the explosion energy E and the Ni56 mass required to power the post-plateau light curve tail through Co56 decay. The method is useful for SNe IIP with well-observed bolometric light curves both during the plateau and radioactive tail phases. The resulting distances and future improvements are discussed.
description: Two-column format: 9 pages, 7 figures, 3 tables. Several misprints were corrected: especially in Eqs. 1 and 11, and in Table 3 for the SN 1987A Ni-mass. Some places are supplemented with more detailed explanations. The entries in Tables 1 and 2 for SN 1989L are revised. Accepted for publication in MNRAS
Anasterias minuta Perrier 1875
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Forcipulatida
Asteriidae
Anasterias
Anasterias minuta

description: minuta Perrier, 1875, Anasterias
Anasterias minuta Perrier, 1875: 81. — Clark in Clark & Mah 2001: 245.
CURRENT STATUS. — Anasterias minuta Perrier, 1875
TYPE MATERIAL. — Unknown origin • holotype; L’Astrolabe & La Zélée expedition (1837-1840); Hombron & Jacquinot leg.; MNHN-IE-2014-261.
REMARK
Status doubtful; A. minuta is a juvenile individual (Clark in Clark & Mah 2001: 245).
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on page 300, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
Orbital-driven Rashba effect in a binary honeycomb monolayer AgTe
Creators: name: Ünzelmann, Maximilian
name: Bentmann, Hendrik
name: Eck, Philipp
name: Kißlinger, Tilman
name: Geldiyev, Begmuhammet
name: Rieger, Janek
name: Moser, Simon
name: Vidal, Raphael C.
name: Kißner, Katharina
name: Hammer, Lutz
name: Schneider, M. Alexander
name: Fauster, Thomas
name: Sangiovanni, Giorgio
name: Di Sante, Domenico
name: Reinert, Friedrich
Publisher: name: arXiv
Year: 2019
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The Rashba effect is fundamental to the physics of two-dimensional electron systems and underlies a variety of spintronic phenomena. It has been proposed that the formation of Rashba-type spin splittings originates microscopically from the existence of orbital angular momentum (OAM) in the Bloch wave functions. Here, we present detailed experimental evidence for this OAM-based origin of the Rashba effect by angle-resolved photoemission (ARPES) and two-photon photoemission (2PPE) experiments for a monolayer AgTe on Ag(111). Using quantitative low-energy electron diffraction (LEED) analysis we determine the structural parameters and the stacking of the honeycomb overlayer with picometer precision. Based on an orbital-symmetry analysis in ARPES and supported by first-principles calculations, we unequivocally relate the presence and absence of Rashba-type spin splittings in different bands of AgTe to the existence of OAM.
On The Injection Spectrum of Ultrahigh Energy Cosmic Rays in the Top-Down Scenario
Creators: name: Basu, Rahul
name: Bhattacharjee, Pijushpani
Publisher: name: arXiv
Year: 2004
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We analyze the uncertainties involved in obtaining the injection spectra of UHECR particles in the top-down scenario of their origin. We show that the DGLAP $Q^2$ evolution of fragmentation functions (FF) to $Q=M_X$ (mass of the X particle) from their initial values at low $Q$ is subject to considerable uncertainties. We therefore argue that, for $x\lsim 0.1$ (the $x$ region of interest for most large $M_X$ values of interest, $x\equiv 2E/M_X$ being the scaled energy variable), the FF obtained from DGLAP evolution is no more reliable than that provided, for example, by a simple Gaussian form (in the variable $\ln(1/x)$) obtained under the Modified Leading Log Approximation (MLLA). Additionally, we find that for $x\gsim0.1$, the evolution in $Q^2$ of the singlet FF, which determines the injection spectrum, is ``minimal'' -- the singlet FF changes by barely a factor of 2 after evolving it over $\sim$ 14 orders of magnitude in $Q\sim M_X$. We, therefore, argue that as long as the measurement of the UHECR spectrum above $\sim10^{20}\ev$ is going to remain uncertain by a factor of 2 or larger, it is good enough for most practical purposes to directly use any one of the available initial parametrisations of the FFs in the $x$ region $x\gsim0.1$ based on low energy data even without evolving them to the requisite $Q^2$ value.
description: Minor changes, added a reference, version to appear in Phys. Rev. D
A Fluid Generalization of Membranes
Creators: name: Roberts, Mark D.
Publisher: name: arXiv
Year: 2004
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: In a certain sense a perfect fluid is a generalization of a point particle. This leads to the question as to what is the corresponding generalization for extended objects. The lagrangian formulation of a perfect fluid is much generalized and this has as a particular example a fluid which is a classical generalization of a membrane, however there is as yet no indication of any relationship between their quantum theories.
description: To appear in CEJP, updated to coincide with published version
Differential Expression of Clostridium difficile and phage genes during a one-step growth curve
Creators: name: Thekra S. T. Al-Tayawi
Publisher: name: University of Leicester
Year: 2020
Subjects: Uncategorized

description: Clostridium difficile is one of the most dangerous pathogens that causes significant human morbidity and mortality in hospital settings. Bacteriophages are viruses of bacteria that are ubiquitous in nature. Most strains of C. difficile carry one or more prophages that can support the virulence of the bacteria. However, during the lytic cycle, temperate phages can affect virulence genes expression. In order to investigate the impact of phage on the infection potential of C. difficile, high-throughput RNA sequencing reactions (RNA-seq) were conducted on a genome-wide transcriptomic analysis of the epidemic C. difficile strain R20291. The finding from RNA-seq analysis shows that at different growth time points the expression of a majority of strain R20291 genes changed for R20291 infected with phage CDHS1 compared with uninfected R20291. Those R20291 genes involved in core DNA binding and transcription were among the genes most highly expressed. Genes encoding metabolic processes and permease were among the very low expression levels group (i.e. were down-regulated). Both RNA-seq and qPCR techniques showed significant down regulation in genes coding toxin A, B and the binary toxin in C. difficile infected with phage CDHS1. Galleria mellonella larvae were used as an infection model to analyse phage effects on C. difficile virulence. This showed that larvae infected with lysogenic C. difficile containing φCDHS1 had reduced survival whilst less virulent bacteria which were resistant to φCDHS1 and wild type C. difficile, were less infective. In addition, the more pathogenic strains (lysogenic) produced greater immune responses in G. mellonella than the relatively less-pathogenic forms (resistant to φCDHS1 and wild type). This study suggests that temperate phage can mimic the virulence enhancing aspect for lytic phage.
Perpendicular Magnetic Anisotropy in Conducting NiCo2O4 Films from Spin-Lattice Coupling
Creators: name: Mellinger, Corbyn
name: Waybright, Jace
name: Zhang, Xiaozhe
name: Schmidt, Caleb
name: Xu, Xiaoshan
Publisher: name: arXiv
Year: 2019
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: High perpendicular magnetic anisotropy (PMA), a property needed for nanoscale spintronic applications, is rare in oxide conductors. We report the observation of a PMA up to 0.23 MJ/m3 in modestly strained epitaxial NiCo2O4 (NCO) films which are room-temperature ferrimagnetic conductors. Spin-lattice coupling manifested as magnetoelastic effect was found as the origin of the PMA. The in-plane xx-yy states of Co on tetrahedral sites play crucial role in the magnetic anisotropy and spin-lattice coupling with an energy scale of 1 meV/f.u. The elucidation of the microscopic origin paves a way for engineering oxide conductors for PMA using metal/oxygen hybridizations.
Utricularia vulgaris Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Lamiales
Lentibulariaceae
Utricularia
Utricularia vulgaris

description: Utricularia vulgaris Linnaeus, Species Plantarum 1: 18. 1753. "Habitat in Europae fossis." RCN: 146. Lectotype (Taylor in Kew Bull. 18: 171. 1964): Herb. Linn. No. 34.2 (LINN). Generitype of Utricularia Linnaeus (vide Hitchcock, Prop. Brit. Bot 116. 1929). Current name:  Utricularia vulgaris L. (Lentibulariaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part U), pp. 906-910 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on pages 909-910, DOI: 10.5281/zenodo.291971
NAFLD and XOS project, rat data, gut microbiota
Creators: name: Hintikka, Jukka
name: Pekkala, Satu
name: Lahti, Leo
Publisher: name: figshare
Year: 2021
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: 110199 Medical Biochemistry and Metabolomics not elsewhere classified
subject: FOS: Clinical medicine
subject: 110307 Gastroenterology and Hepatology

description: Data repository for the article "Xylo-oligosaccharides in prevention of hepatic steatosis and adipose tissue inflammation: associating taxonomic and metabolomic patterns in fecal microbiomes with biclustering" by Hintikka, J et al 2021.
Hintikka, J.; Lensu, S.; Mäkinen, E.; Karvinen, S.; Honkanen, M.; Lindén, J.; Garrels, T.; Pekkala, S.; Lahti, L. Xylo-Oligosaccharides in Prevention of Hepatic Steatosis and Adipose Tissue Inflammation: Associating Taxonomic and Metabolomic Patterns in Fecal Microbiomes with Biclustering. Int. J. Environ. Res. Public Health 2021, 18, 4049. https://doi.org/10.3390/ijerph18084049
Parallelization of a treecode
Creators: name: Valdarnini, R.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: I describe here the performance of a parallel treecode with individual particle timesteps. The code is based on the Barnes-Hut algorithm and runs cosmological N-body simulations on parallel machines with a distributed memory architecture using the MPI message-passing library. For a configuration with a constant number of particles per processor the scalability of the code was tested up to P=128 processors on an IBM SP4 machine. In the large $P$ limit the average CPU time per processor necessary for solving the gravitational interactions is $\sim 10 %$ higher than that expected from the ideal scaling relation. The processor domains are determined every large timestep according to a recursive orthogonal bisection, using a weighting scheme which takes into account the total particle computational load within the timestep. The results of the numerical tests show that the load balancing efficiency $L$ of the code is high ($>=90%$) up to P=32, and decreases to $L\sim 80%$ when P=128. In the latter case it is found that some aspects of the code performance are affected by machine hardware, while the proposed weighting scheme can achieve a load balance as high as $L\sim 90%$ even in the large $P$ limit.
description: 30 pages, 3 tables, 9 figures, accepted for publication in New Astronomy
Kadsura japonica Dunal
Creators: name: Jarvis, Charlie
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Austrobaileyales
Schisandraceae
Kadsura
Kadsura japonica

description: Uvaria japonica Linnaeus, Species Plantarum 1: 536. 1753. "Habitat in Japonia." RCN: 3988. Lectotype (Smith in Sargentia 7: 181. 1947): [icon] " Futo Kadsura " in Kaempfer, Amoen. Exot. Fasc.: 476, 477. 1712. Current name:  Kadsura japonica (L.) Dunal (Schizandraceae). Note: Saunders (in Syst. Bot. Monogr. 54: 64. 1998) also accepts Kaempfer’s plate as the type, and reproduces it as his f. 1 (p. 5).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part U), pp. 906-910 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 910, DOI: 10.5281/zenodo.291971
Asterina stellifera
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Valvatida
Asterinidae
Asterina
Asterina stellifera

description: minutus Müller & Troschel, 1842, Asteriscus
Asteriscus minutus Müller & Troschel 1842: 41.
Asterina stellifera ‒ Clark 1993: 214.
CURRENT STATUS. — Asterina stellifera (Möbius, 1859).
TYPE MATERIAL. — Brazil • 4 syntypes; Rio de Janeiro; L’Herminie expedition; 1830-1832; Gaudichaud leg.; MNHN-IE-2014-238.
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on page 300, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
Effects of light and hydrogen peroxide on gene expression of newly identified antioxidant enzymes in the harmful algal bloom species Chattonella marina
Creators: name: Mukai, Koki
name: Shimasaki, Yohei
name: Qiu, Xuchun
name: Kato-Unoki, Yoko
name: Chen, Kun
name: Khanam, Mst Ruhina Margia
name: Oshima, Yuji
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Astronomical and Space Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Plant Biology
subject: Computational Biology

description: Antioxidant enzymes are essential proteins that maintain cell proliferation potential by protecting against oxidative stress. They are present in many organisms including harmful algal bloom (HAB) species. We previously identified the antioxidant enzyme 2-Cys peroxiredoxin (PRX) in the raphidophyte Chattonella marina. This enzyme specifically decomposes a hydrogen peroxide (H2O2). PRX is the only antioxidant enzyme so far identified in C. marina. This study used mRNA-seq, using Trinity assemble and blastx for annotation, to identify a further five antioxidant enzymes from C. marina: Cu Zn superoxide dismutase (Cu/Zn-SOD), glutathione peroxidase (GPX), catalase (CAT), ascorbate peroxidase (APX) and thioredoxin (TRX). In the gene expression analysis of six enzymes (Cu/Zn-SOD, GPX, CAT, APX, TRX and PRX) using light-acclimated (100 μmol photons m−2 s−1) C. marina cells, only PRX gene expression levels were significantly increased by strong light irradiation (1000 μmol photons m−2 s−1). H2O2 concentration and scavenging activity were also increased and significantly positively correlated with PRX gene expression levels. In dark-acclimated cells, expression levels of all antioxidant enzymes except APX were significantly increased by light irradiation (100 μmol photons m−2 s−1). Expression decreased the following day, with the exception of PRX expression. With the exception of CAT, gene expression of antioxidant enzymes was not significantly induced by artificial H2O2 treatment, although average gene expression levels were slightly increased in some enzymes. Thus, we suggest that light is the main trigger of gene expression, but the resultant oxidative stress is also a possible factor affecting the gene expression of antioxidant enzymes in C. marina.
Additional file 1 of Sugar-sweetened beverage consumption and bone health: a systematic review and meta-analysis
Creators: name: Hyejin Ahn
name: Park, Yoo Kyoung
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 1: Table S1. PRISMA 2009 checklist. Table S2. Search strategy for a systematic review and meta-analysis assessing the association between SSB consumption and bone health in children and adults. Table S3. Individual effect sizes from studies included in the meta-analysis.
The Borel/Novikov conjectures and stable diffeomorphisms of 4-manifolds
Creators: name: Davis, James F.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Geometric Topology (math.GT)
subject: FOS: Mathematics
subject: 57N13, 57R67

description: Two 4-manifolds are stably diffeomorphic if they become diffeomorphic after connected sum with S^2 x S^2's. This paper shows that two closed, orientable, homotopy equivalent, smooth 4-manifolds are stably diffeomorphic, provided a certain map from the second homology of the fundamental group with coefficients in Z/2 to the L-theory of the group is injective. This injectivity is implied by the Borel/Novikov conjecture for torsion-free groups, which is known for many groups. There are also results concerning the homotopy invariance of the Kirby-Siebenmann invariant. The method of proof is to use Poincare duality in Spin bordism to translate between Wall's classical surgery and Kreck's modified surgery.
description: Re-TeXed. The references are now numbered; Geometry and topology of manifolds, 63-76, Fields Inst. Commun., 47, Amer. Math. Soc., Providence, RI, 2005
Cheiraster (Christopheraster) mirabilis
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Notomyotida
Benthopectinidae
Cheiraster
Cheiraster mirabilis

description: mirabilis Perrier, 1881, Archaster
Archaster mirabilis Perrier, 1881: 27; 1884: 256, pl. 8, figs 7-8, pl. 9, fig. 4, pl. 10, figs 2, 3.
Cheiraster (Christopheraster) mirabilis ‒ Clark & Downey 1992: 133.
CURRENT STATUS. — Cheiraster (Christopheraster) mirabilis (Perrier, 1881).
TYPE MATERIAL. — Caribbean Sea • 2 paratypes; St Kitts; BLAKE expedition (1878-1879); MNHN-IE-2014-369 • 1 paratype, same as for preceding; MNHN-IE-2014-351 • 3 paratypes; Barbados; same as for preceding; MNHN-IE-2014-621 • 20 paratypes; Cariacou; same as for preceding; MNHN-IE-2014-344 • 1 paratype; Dominica; same as for preceding; MNHN-IE-2014-350 • 10 paratypes; unspecified locality; same as for preceding; MNHN-IE-2014-348.
REMARK
The holotype is deposited in MCZ (MCZ 10) (Clark & Downey 1992).
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on page 300, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
Black hole spontaneous scalarisation with a positive cosmological constant
Creators: name: Brihaye, Yves
name: Herdeiro, Carlos
name: Radu, Eugen
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: A scalar field non-minimally coupled to certain geometric [or matter] invariants which are sourced by [electro]vacuum black holes (BHs) may spontaneously grow around the latter, due to a tachyonic instability. This process is expected to lead to a new, dynamically preferred, equilibrium state: a scalarised BH. The most studied geometric [matter] source term for such spontaneous BH scalarisation is the Gauss-Bonnet quadratic curvature [Maxwell invariant]. This phenomenon has been mostly analysed for asymptotically flat spacetimes. Here we consider the impact of a positive cosmological constant, which introduces a cosmological horizon. The cosmological constant does not change the local conditions on the scalar coupling for a tachyonic instability of the scalar-free BHs to emerge. But it leaves a significant imprint on the possible new scalarised BHs. It is shown that no scalarised BH solutions exist, under a smoothness assumption, if the scalar field is confined between the BH and cosmological horizons. Admitting the scalar field can extend beyond the cosmological horizon, we construct new scalarised BHs. These are asymptotically de Sitter in the (matter) Einstein-Maxwell-scalar model, with only mild difference with respect to their asymptotically flat counterparts. But in the (geometric) extended-scalar-tensor-Gauss-Bonnet-scalar model, they have necessarily non-standard asymptotics, as the tachyonic instability dominates in the far field. This interpretation is supported by the analysis of a test tachyon on a de Sitter background.
description: 15 pages, 4 figures
Data and R scripts for: Plants with extrafloral nectaries share indirect defenses and shape the local arboreal ant community
Creators: name: Moura, Renan
name: Del-claro, Kleber
Publisher: name: figshare
Year: 2022
Subjects: subject: 60299 Ecology not elsewhere classified
subject: FOS: Biological sciences

description: Data and scripts from the manuscript: Plants with extrafloral nectaries share indirect defenses and shape the local arboreal ant community.
Development of the Human Fovea after Preterm Birth measured using Hand Held Spectral Domain Optical Coherence Tomography (HH SD-OCT)
Creators: name: Anwar, Samira
Publisher: name: University of Leicester
Year: 2020
Subjects: Uncategorized

description: BackgroundMuch remains unknown about the influence of severity of prematurity and presence of retinopathy of prematurity (ROP) on the development of the fovea after preterm birth during the perinatal period from postmenstrual age (PMA) 30 to 44 weeks.
AimsMeasures of foveal morphology, individual retinal layers and foveal oedema (CME), with and without ROP using HH-OCT, adjusting for gestational age (GA) and birthweight (BW).
MethodsProspective mixed cross-sectional and longitudinal study of infants (23 to 36 weeks GA). Foveal width, area, depth, central foveal thickness (CFT), individual retinal layers and CME severity were analysed. Infants with ROP were included until they underwent treatment.
ResultsHH SD-OCT images (n=344) from n= 112 infants were suitable for analysis (n=278 foveal morphology, retinal layers; n=66 CME). A significant interaction between ROP and PMA independent of GA or BW (p<0.001), was due to increasing foveal width with PMA for ROP and decreasing in the non-ROP group. This correlated with significantly increased outer retinal layers in early PMA (p<0.001).Severity of GA and BW correlated with foveal area (p<0.005) and depth (p≤0.001); CFT (p=0.007) correlated only with GA. In the perinatal period, the thicker fovea observed 3 in early GA compared to later born infants is due to an increased INL (p=0.005). CME was present in 22% of all infants. CME severity may relate to presence or absence of the external limiting membrane (ELM).
ConclusionsDynamic differences exist between foveal parameters and retinal layers during the perinatal period depending on the severity of prematurity and presence of ROP. Independent of GA and BW, foveal width has potential as a marker that distinguishes between infants with and without ROP in early screening using HH SD-OCT. The severity of CME may relate to ELM disruption; further study would aid understanding of any adverse future outcomes.