cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Expression of USP18 and IL2RA is increased in individuals receiving latent tuberculosis treatment with isoniazid.
Creators: name: Eleane De Oyarzabal
name: García-García, Lourdes
name: Rangel-Escareño, Claudia
name: Ferreyra-Reyes, Leticia
name: Orozco, Lorena
name: Herrera, María Teresa
name: Carranza, Claudia
name: Sada, Eduardo
name: Juárez, Esmeralda
name: Ponce-De-León, Alfredo
name: Sifuentes-Osornio, José
name: Wilkinson, Robert J
name: Torres, Martha
Publisher: name: The Francis Crick Institute
Year: 2020
Subjects: subject: Model organisms
subject: Infectious Disease
subject: Human Biology & Physiology
subject: Immunology
subject: FOS: Clinical medicine

description: Background: The treatment of latent tuberculosis infection (LTBI) in individuals at risk of reactivation is essential for tuberculosis control. However, blood biomarkers associated with LTBI treatment have not been identified. Methods: Blood samples from tuberculin skin test (TST) reactive individuals were collected before and after one and six months of isoniazid (INH) therapy. Peripheral mononuclear cells (PBMC) were isolated, and an in-house interferon-γ release assay (IGRA) was performed. Expression of chemokine ligand 4 (CCL4), chemokine ligand 10 (CXCL10), chemokine ligand 11 (CXCL11), interferon alpha (IFNA), radical S-adenosyl methionine domain-containing 2 (RSAD2), ubiquitin-specific peptidase 18 (USP18), interferon-induced protein 44 (IFI44), interferon-induced protein 44 like (IFI44L), interferon-induced protein tetratricopeptide repeats 1(IFIT1), and interleukin 2 receptor subunit alpha (IL2RA) mRNA levels were assessed by qPCR before, during, and after INH treatment. Results: We observed significantly lower relative abundances of USP18, IFI44L, IFNA, and IL2RA transcripts in PBMC from IGRA-positive individuals compared to levels in IGRA-negative individuals before INH therapy. Also, relative abundance of CXCL11 was significantly lower in IGRA-positive than in IGRA-negative individuals before and after one month of INH therapy. However, the relative abundance of CCL4, CXCL10, and CXCL11 mRNA was significantly decreased and that of IL2RA and USP18 significantly increased after INH therapy, regardless of the IGRA result. Our results show that USP18, IFI44L, IFIT1, and IL2RA relative abundances increased significantly, meanwhile the relative abundance of CCL4, CXCL11, and IFNA decreased significantly after six months of INH therapy in TST-positive individuals. Conclusions: Changes in the profiles of USP18, IL2RA, IFNA, CCL4, and CXCL11 expressions during INH treatment in TST-positive individuals, regardless of IGRA status, are potential tools for monitoring latent tuberculosis treatment.
Construction and Validation of the Marital Reminiscence Styles Questionnaire: The Association of Marital Reminiscence Styles and Relationship Quality
Creators: name: Forstmeier, Simon
name: Majzoobi, Mohammad Reza
Publisher: name: OSF Registries
Year: 2023
Subjects: subject: Marriage and Family Therapy and Counseling
subject: Medicine and Health Sciences
subject: Developmental Psychology
subject: Quantitative Psychology
subject: Cognitive Psychology
subject: Mental and Social Health
subject: Social and Behavioral Sciences
subject: Psychology
subject: FOS: Psychology

description: This study was to develop and validate the Marital Reminiscence Styles Questionnaire (MRSQ) and examine the relationship between MRS and relationship quality (RQ). The research population included all married individuals aged 20 to 70 living in Kermanshah, Iran in 2023. Two samples of 304 and 250 individuals, and a subsample of 98 individuals were selected using convenience sampling. Participants responded to the 28-item MRSQ, Webster’s reminiscence functions scale (RFS), and Chonody et al.’s RQ scale. Exploratory factor analysis using varimax rotation (N=304) revealed 21 items grouped into four factors: Reminiscence Frequency (3 items), Obsessive Reminiscence (6 items, negative), Narrative Reminiscence (4 items, positive), and Integrative-Problem Solving Reminiscence (IPSR, 8 items, positive). The internal reliability, by Cronbach’s alpha, for the mentioned components was .72, .80, .71, and .80, respectively. The results of confirmatory factor analysis (N=250) showed that the four-factor model of the questionnaire fits well in the second study sample. Pearson’s correlation coefficient in both samples indicated that two positive components (narrative and IPSR) of MRSQ have positive relationships with all positive subscales of the RFS and negative relationships with all negative subscales of the RFS. However, Obsessive Reminiscence had only a positive relationship with the Bitterness Revival subscale of the RFS in the second sample. In both samples, the positive components of the MRSQ and Obsessive Reminiscence had positive and negative relationships, respectively, with the RQ. Finally, test-retest reliability results with a one-month interval indicated that the four factors of MRSQ had good reliability over time (r=.89 to .83).
Additional file 1: of Exacerbations and healthcare resource utilization among COPD patients in a Swedish registry-based nation-wide study
Creators: name: Johansson, Gunnar
name: Mushnikov, Vasili
name: Bäckström, Tobias
name: Engström, Andreas
name: Javaria Khalid
name: Wall, Jennifer
name: Hoti, Fabian
Publisher: name: figshare
Year: 2018
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy

description: Supplementary information. (DOC 96 kb)
CosmoGAN: creating high-fidelity weak lensing convergence maps using Generative Adversarial Networks
Creators: name: Mustafa, Mustafa
name: Bard, Deborah
name: Bhimji, Wahid
name: Lukić, Zarija
name: Al-Rfou, Rami
name: Kratochvil, Jan M.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Machine Learning (cs.LG)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: Inferring model parameters from experimental data is a grand challenge in many sciences, including cosmology. This often relies critically on high fidelity numerical simulations, which are prohibitively computationally expensive. The application of deep learning techniques to generative modeling is renewing interest in using high dimensional density estimators as computationally inexpensive emulators of fully-fledged simulations. These generative models have the potential to make a dramatic shift in the field of scientific simulations, but for that shift to happen we need to study the performance of such generators in the precision regime needed for science applications. To this end, in this work we apply Generative Adversarial Networks to the problem of generating weak lensing convergence maps. We show that our generator network produces maps that are described by, with high statistical confidence, the same summary statistics as the fully simulated maps.
description: 11 pages, 8 figures
Identification of some novel pyrazolo[1,5-a]pyrimidine derivatives as InhA inhibitors through pharmacophore-based virtual screening and molecular docking
Creators: name: Modi, Palmi
name: Patel, Shivani
name: Chhabria, Mahesh T.
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences

description: The InhA inhibitors play key role in mycolic acid synthesis by preventing the fatty acid biosynthesis pathway. In this present article, Pharmacophore modelling and molecular docking study followed by in silico virtual screening could be considered as effective strategy to identify newer enoyl-ACP reductase inhibitors. Pyrrolidine carboxamide derivatives were opted to generate pharmacophore models using HypoGen algorithm in Discovery studio 2.1. Further it was employed to screen Zinc and Minimaybridge databases to identify and design newer potent hit molecules. The retrieved newer hits were further evaluated for their drug likeliness and docked against enoyl acyl carrier protein reductase. Here, novel pyrazolo[1,5-a]pyrimidine analogues were designed and synthesized with good yields. Structural elucidation of synthesized final molecules was perform through IR, MASS, 1H-NMR, 13C-NMR spectroscopy and further tested for its in vitro anti-tubercular activity against H37Rv strain using Microplate Alamar blue assay (MABA) method. Most of the synthesized compounds displayed strong anti-tubercular activities. Further, these potent compounds were gauged for MDR-TB, XDR-TB and cytotoxic study.
Additional file 1: of Applying GRADE-CERQual to qualitative evidence synthesis findingsâ paper 6: how to assess relevance of the data
Creators: name: Noyes, Jane
name: Booth, Andrew
name: Lewin, Simon
name: Carlsen, Benedicte
name: Glenton, Claire
name: Colvin, Christopher
name: Garside, Ruth
name: Bohren, Meghan
name: Rashidian, Arash
name: Wainwright, Megan
name: ĂZge TunĎAlp
name: Chandler, Jacqueline
name: Flottorp, Signe
name: Pantoja, Tomas
name: Tucker, Joseph
name: Munthe-Kaas, Heather
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy

description: Key definitions relevant to CERQual. (PDF 619Â kb)
Additional file 1 of A copper switch for inducing CRISPR/Cas9-based transcriptional activation tightly regulates gene expression in Nicotiana benthamiana
Creators: name: Garcia-Perez, Elena
name: Diego-Martin, Borja
name: Quijano-Rubio, Alfredo
name: Moreno-Giménez, Elena
name: Selma, Sara
name: Orzaez, Diego
name: Vazquez-Vilar, Marta
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1. Supplementary Table 1: GB level 1 and >1 transcriptional units and modules. Sequences can be found at http://www.gbcloning.upv.es/ using the GB number or GB name. Supplementary Table 2: Primer pairs for RT-qPCR.
Towards the $K(2)$-local homotopy groups of $Z$
Creators: name: Bhattacharya, Prasit
name: Egger, Philip
Publisher: name: arXiv
Year: 2017
Subjects: subject: Algebraic Topology (math.AT)
subject: FOS: Mathematics

description: Recently we introduced a class $\widetilde{\mathcal{Z}}$ of $2$-local finite spectra and showed that all spectra $Z\in \widetilde{\mathcal{Z}}$ admit a $v_2$-self-map of periodicity $1$. The aim of this article is to compute the $K(2)$-local homotopy groups $π_*L_{K(2)}Z$ of all spectra $Z \in \widetilde{\mathcal{Z}}$ using a homotopy fixed point spectral sequence, and we give an almost complete computation. The incompleteness lies in the fact that we are unable to eliminate one family of $d_3$-differentials and a few potential hidden extensions, though we conjecture that all these differentials and hidden extensions are trivial.
The Period map for quantum cohomology of $\mathbb{P}^2$
Creators: name: Milanov, Todor
Publisher: name: arXiv
Year: 2017
Subjects: subject: Algebraic Geometry (math.AG)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Mathematics
subject: FOS: Physical sciences
subject: 14N35, 33C20

description: We invert the period map defined by the second structure connection of quantum cohomology of $\mathbb{P}^2$. For small quantum cohomology the inverse is given explicitly in terms of the Eisenstein series $E_4$ and $E_6$, while for big quantum cohomology the inverse is determined perturbatively as a Taylor series expansion whose coefficients are quasi-modular forms.
description: 58 pages. Typos fixed. The previous version was extended in the following way: we proved the Laplace transform version of the $\Gamma$-conjecture for $\mathbb{P}^2$, worked out the structure of a Schwarz triangular map, and added an appendix explaining the relation to vertex algebras and W-constraints. Version accepted in Adv. in Math
Additional file 2: of Extended FTLD pedigree segregating a Belgian GRN-null mutation: neuropathological heterogeneity in one family
Creators: name: Sieben, Anne
name: Mossevelde, Sara Van
name: Wauters, Eline
name: Engelborghs, Sebastiaan
name: Zee, Julie Van Der
name: Langenhove, Tim Van
name: Santens, Patrick
name: Praet, Marleen
name: Boon, Paul
name: Miatton, Marijke
name: Hoecke, Sofie Van
name: Vandenbulcke, Mathieu
name: Vandenberghe, Rik
name: Cras, Patrick
name: Cruts, Marc
name: Deyn, Peter De
name: Broeckhoven, Christine Van
name: Jean-Jacques Martin
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology

description: Results: neuropathology. (DOCX 22 kb)
Additional file 1 of The process of learning the autogenic training relaxation technique and its benefits on the wellness of people living with HIV
Creators: name: Ramirez Garcia, Maria Pilar
name: Leclerc-Loiselle, Jérôme
name: Côté, José
name: Brouillette, Marie-Josée
name: Thomas, Réjean
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 1. Interview guide for AT participants.
Pre-registration and pre-analysis plan: Formal Institution effects on trust, social norms and networks
Creators: name: Nosenzo, Daniele
name: Fabbri, Marco
name: Schulz, Jonathan
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Economics
subject: Social and Behavioral Sciences

description: Our main goal is to test the hypothesis that land titling fosters impersonal pro-sociality, impersonal pro-social norms as well as enforcement of impersonal pro-social norms. We will also test whether changes in the social structure is a key mechanism that explains these changes.
Incompatibility of Observables as State-Independent Bound of Uncertainty Relations
Creators: name: Xiao, Yunlong
name: Guo, Cheng
name: Meng, Fei
name: Jing, Naihuan
name: Yung, Man-Hong
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: For a pair of observables, they are called "incompatible", if and only if the commutator between them does not vanish, which represents one of the key features in quantum mechanics. The question is, how can we characterize the incompatibility among three or more observables? Here we explore one possible route towards this goal through Heisenberg's uncertainty relations, which impose fundamental constraints on the measurement precisions for incompatible observables. Specifically, we quantify the incompatibility by the optimal state-independent bounds of additive variance-based uncertainty relations. In this way, the degree of incompatibility becomes an intrinsic property among the operators, but not on the quantum state. To justify our case, we focus on the incompatibility of spin systems. For an arbitrary setting of two or three linearly-independent Pauli-spin operators, the incompatibility is analytically solved, the spins are maximally incompatible if and only if they are orthogonal to each other. On the other hand, the measure of incompatibility represents a versatile tool for applications such as testing entanglement of bipartite states, and EPR-steering criteria.
description: Comments are welcome
Relationship of troponin to incident atrial fibrillation occurrence, recurrence after radiofrequency ablation and prognosis: a systematic review, meta-analysis and meta-regression
Creators: name: Bai, Ying
name: Guo, Shi-Dong
name: Liu, Yue
name: Ma, Chang-Sheng
name: Y. H. Lip, Gregory
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Objective: To explore the association between the levels of troponin (Tn) and incident atrial fibrillation (AF) occurrence, AF recurrence after radiofrequency ablation (RFA), and the risk trend of AF related prognosis (stroke, major bleeding and mortality). Methods: Twenty-seven studies were included after a systematic search in PubMed from 2005 to 2017, including 13 associated with incident AF occurrence, 8 associated with AF recurrence after RFA and 6 studies evaluating the risk trend of AF-related prognosis with increased Tn levels. Results: Compared with ‘no incident AF occurrence’ patients, the incident AF occurrence group had similar baseline troponin I (TnI) levels (standardized mean differences [SMD] = 0.42, 95% CI: −0.02–0.86, p = 0.06; I2 = 87.0%, N = 6), but higher troponin T (TnT) levels (SMD = 3.77, 2.13–5.42, p <0.001; I2=99.7%, N = 8). AF recurrence patients had similar peri-ablation TnI levels, but higher peri-ablation TnT levels compared to the ‘no AF recurrence’ group with pooled SMD. (TnI: SMD: −0.61, −1.22to 0, p = 0.049; I2 = 87.1%; TnT: 0.38, 0.14–0.62, p = 0.002; I2 = 64.7%). On meta-regression, there was an increased risk trend for stroke/systemic embolism (SE) (r2 = 0.93, p = 0.04) or major bleeding (r2 = 0.99, p < .0001) with the increasing TnT levels. Mortality was not significantly related to TnI (r2 = 0.09, p = 0.25) or TnT (r2 = 0.20, p = 0.31), and stroke/SE (r2 = 0.02, p = 0.74) or major bleeding (r2 = 0.002, p = 0.92) was non-significantly related to increasing TnI levels. Conclusions: In our systematic review, meta-analysis and meta-regression, TnT was associated with both incident AF occurrence and AF recurrence after RFA, as well as stroke/SE and major bleeding. In contrast, TnI was not associated with incident AF occurrence, AF recurrence after RFA or prognosis (stroke/SE, major bleeding).
Validity of existing instruments for informing first-time diagnosis of ASD in adulthood
Creators: name: Shinall, Jacqueline
Publisher: name: No Publisher Supplied
Year: 2024

description: Increasing awareness of autism spectrum disorder (ASD) has resulted in a greater number of adults seeking a first-time autism diagnosis. Most adults referred for an autism assessment are previously diagnosed with ADHD, a psychological disorder (i.e., Major Depressive Disorder, Generalized Anxiety Disorder, etc.), and/or suicide attempts. Yet, many of them are met with significant barriers, such as long wait lists, financial burden, and untrained professionals. Previous research has largely presented variable sensitivity and specificity of measures designed for adult ASD assessment. Few screening and diagnostic tools were developed to assess adults with no previous ASD diagnosis. Poorly standardized methods lead to an increased need for research to inform an autism diagnosis. This study sought to assess the validity of current screening tools (e.g., SRS-2, AQ, RAADS-R) frequently used to assess symptoms of ASD in adults. Two methods of cognitive interviewing (e.g., Think Aloud and Verbal Probing) were utilized to gain insight into adults’ experiences completing these instruments. This yielded a total of 10 transcripts (six Think Aloud and four Verbal Probing) and 529 items that were qualitatively coded to capture participant responses to items. Results indicated several reasons for difficulty answering questionnaire items, including context-dependent responses, behavior/skill changes across time, and other problems with wording. The findings caution clinicians against over-reliance on self-report measures in the ASD diagnostic process, and can inform future development of more efficient and accurate screening and diagnostic tools.
Additional file 1 of Evaluation of the Conversations About Gambling Mental Health First Aid course: effects on knowledge, stigmatising attitudes, confidence and helping behaviour
Creators: name: Bond, Kathy S.
name: Cottrill, Fairlie A.
name: Morgan, Amy J.
name: Chalmers, Kathryn J.
name: Lyons, Julia N.
name: Rossetto, Alyssia
name: Kelly, Claire M.
name: Kelly, Louise
name: Reavley, Nicola J.
name: Jorm, Anthony F.
Publisher: name: figshare
Year: 2022
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1. Merged surveys: T1T2T3surveys.pdf
Homology of ternary algebras yielding invariants of knots and knotted surfaces
Creators: name: Niebrzydowski, Maciej
Publisher: name: arXiv
Year: 2017
Subjects: subject: Geometric Topology (math.GT)
subject: Algebraic Topology (math.AT)
subject: FOS: Mathematics
subject: 57M27 (Primary) 55N35, 57Q45 (Secondary)

description: We define homology of ternary algebras satisfying axioms derived from particle scattering or, equivalently, from the third Reidemeister move. We show that ternary quasigroups satisfying these axioms appear naturally in invariants of Reidemeister, Yoshikawa, and Roseman moves. Our homology has a degenerate subcomplex. The normalized homology yields invariants of knots and knotted surfaces.
description: 30 pages
Additional file 6: of The pivotal role of aristaless in development and evolution of diverse antennal morphologies in moths and butterflies
Creators: name: Ando, Toshiya
name: Fujiwara, Haruhiko
name: Kojima, Tetsuya
Publisher: name: figshare
Year: 2018
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Supplementary Methods. (PDF 350Â kb)
Inflation and Leptogenesis in a $U(1)$-enhanced supersymmetric model
Creators: name: Ahn, Y. H.
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Motivated by the flavored Peccei-Quinn symmetry for unifying flavor physics and string theory, we investigate a supersymmetric extension of standard model (SM) for an explanation of inflation and leptogenesis by introducing $U(1)$ symmetries such that the $U(1)$-$[gravity]^2$ anomaly-free condition together with the SM flavor structure demands additional sterile neutrinos as well as no axionic domain-wall problem. Such additional neutrinos may play a crucial role as a bridge between leptogenesis and new neutrino oscillations along with high energy cosmic events. In a realistic moduli stabilization, we show that the moduli backreaction effect on the inflationary potential leads to the energy scale of inflation with the inflaton mass in a way that the power spectrum of the curvature perturbation and the scalar spectral index are to be well fitted with the latest Planck observation. We suggest that a new leptogenesis scenario could naturally be implemented via Affleck-Dine mechanism. So we show that the resultant baryon asymmetry, constrained by the sum of active neutrino masses and new high energy neutrino oscillations, crucially depends on the reheating temperature $T_{\rm reh}$. And we show that the model has a preference on $T_{\rm reh}\sim10^3$ TeV, which is compatible with the required $T_{\rm reh}$ to explain the baryon asymmetry of the Universe.
description: Accepted version in PRD. arXiv admin note: substantial text overlap with arXiv:1611.08359
Proposal of a new quantum annealing schedule for studying quantum annealing of transverse field Ising models
Creators: name: Yamaguchi, Chiaki
Publisher: name: arXiv
Year: 2017
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Recently, Heim, Ronnow, Isakov and Troyer [Science 348 (2015) 215] have reported that Monte Carlo simulations for the Ising spin glass model on the square lattice in the physically relevant continuous-imaginary-time limit do not show superiority of quantum annealing (QA) using transverse field against classical annealing (CA). Although the QA schedule that they had used has been using conventionally, however the QA schedule mathematically has no guarantee that the used schedule is the best QA schedule for performance of optimization. We propose a new QA schedule for studying transverse-field-based quantum versus classical annealing of the Ising model. The present QA schedule utilizes a smallest effective transverse field derived in this article. This QA schedule is made for the comparison between the system with no transverse field and the system with the smallest effective transverse field. As a case study, we study QA of the Ising spin glass model on the square lattice at low but finite temperature. A Monte Carlo algorithm using the physically relevant continuous-imaginary-time limit is performed. As the simulation results, we show superiority of QA against CA when the annealing time is sufficiently spent.
description: 20 pages, 6 figures. v4: this is the final version
Additional file 1 of Routes of administration, reasons for use, and approved indications of medical cannabis in oncology: a scoping review
Creators: name: Vinette, Billy
name: Côté, José
name: El-Akhras, Ali
name: Mrad, Hazar
name: Chicoine, Gabrielle
name: Bilodeau, Karine
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1.
Additional file 1: Table S1. of Cyathostomine egg reappearance period following ivermectin treatment in a cohort of UK Thoroughbreds
Creators: name: Molena, Rebecca
name: Peachey, Laura
name: Cesare, Angela Di
name: Traversa, Donato
name: Cantacessi, Cinzia
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Developmental Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Raw faecal egg count (FEC) data collected from individual horses enrolled in this study, prior to ivermectin (IVM)-treatment, as well as at Day (D) 14, 21, 28, 35, 42 and 49 post-treatment. (DOCX 25Â kb)
A geometric simulation theorem on direct products of finitely generated groups
Creators: name: Barbieri, Sebastián
Publisher: name: arXiv
Year: 2017
Subjects: subject: Dynamical Systems (math.DS)
subject: FOS: Mathematics
subject: 37B10, 37B50

description: We show that every effectively closed action of a finitely generated group $G$ on a closed subset of $\{0,1\}^{\mathbb{N}}$ can be obtained as a topological factor of the $G$-subaction of a $(G \times H_1 \times H_2)$-subshift of finite type (SFT) for any choice of infinite and finitely generated groups $H_1,H_2$. As a consequence, we obtain that every group of the form $G_1 \times G_2 \times G_3$ admits a non-empty strongly aperiodic SFT subject to the condition that each $G_i$ is finitely generated and has decidable word problem. As a corollary of this last result we prove the existence of non-empty strongly aperiodic SFT in a large class of branch groups, notably including the Grigorchuk group.
description: 27 pages, 4 very beautiful figures
Additional file 1: of Extended FTLD pedigree segregating a Belgian GRN-null mutation: neuropathological heterogeneity in one family
Creators: name: Sieben, Anne
name: Mossevelde, Sara Van
name: Wauters, Eline
name: Engelborghs, Sebastiaan
name: Zee, Julie Van Der
name: Langenhove, Tim Van
name: Santens, Patrick
name: Praet, Marleen
name: Boon, Paul
name: Miatton, Marijke
name: Hoecke, Sofie Van
name: Vandenbulcke, Mathieu
name: Vandenberghe, Rik
name: Cras, Patrick
name: Cruts, Marc
name: Deyn, Peter De
name: Broeckhoven, Christine Van
name: Jean-Jacques Martin
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Materials and methods. (DOCX 26 kb)
Additional file 5: Table S1. of The pivotal role of aristaless in development and evolution of diverse antennal morphologies in moths and butterflies
Creators: name: Ando, Toshiya
name: Fujiwara, Haruhiko
name: Kojima, Tetsuya
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Molecular Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Marine Biology
subject: Plant Biology

description: Primers used for preparing RNA probes. (PDF 23Â kb)
Robust approximate Bayesian inference
Creators: name: Ruli, Erlis
name: Sartori, Nicola
name: Ventura, Laura
Publisher: name: arXiv
Year: 2017
Subjects: subject: Methodology (stat.ME)
subject: FOS: Computer and information sciences

description: We discuss an approach for deriving robust posterior distributions from $M$-estimating functions using Approximate Bayesian Computation (ABC) methods. In particular, we use $M$-estimating functions to construct suitable summary statistics in ABC algorithms. The theoretical properties of the robust posterior distributions are discussed. Special attention is given to the application of the method to linear mixed models. Simulation results and an application to a clinical study demonstrate the usefulness of the method. An R implementation is also provided in the robustBLME package.
description: This is a revised and personal manuscript version of the article that has been accepted for publication by Journal of Statistical Planning and Inference
PANICOCENE_Career Development Plan
Creators: name: Giacomelli, Elena
Publisher: name: Zenodo
Year: 2024

description: Elena Giacomelli's Career Development Plan in the framework of the project “PANICOCENE. Reframing Climate Change-induced Mobilities”, funded by the European Commission, through the HORIZON EUROPE Marie Skłodowska-Curie Postdoctoral Global Fellowship 2022 (Grant agreement ID: 101105719).

A Career Development Plan has been established jointly by the supervisors and the researcher. In addition to research objectives, this plan will comprise the researcher's training and career needs, including training on transferable skills, teaching, planning for publications and participation in conferences and events aiming at opening science and research to citizens. The Plan would be updated when needed.
Additional file 2 of Routes of administration, reasons for use, and approved indications of medical cannabis in oncology: a scoping review
Creators: name: Vinette, Billy
name: Côté, José
name: El-Akhras, Ali
name: Mrad, Hazar
name: Chicoine, Gabrielle
name: Bilodeau, Karine
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 2.
Element-centric clustering comparison unifies overlaps and hierarchy
Creators: name: Gates, Alexander J.
name: Wood, Ian B.
name: Hetrick, William P.
name: Ahn, Yong-Yeol
Publisher: name: arXiv
Year: 2017
Subjects: subject: Machine Learning (stat.ML)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: Clustering is one of the most universal approaches for understanding complex data. A pivotal aspect of clustering analysis is quantitatively comparing clusterings; clustering comparison is the basis for many tasks such as clustering evaluation, consensus clustering, and tracking the temporal evolution of clusters. In particular, the extrinsic evaluation of clustering methods requires comparing the uncovered clusterings to planted clusterings or known metadata. Yet, as we demonstrate, existing clustering comparison measures have critical biases which undermine their usefulness, and no measure accommodates both overlapping and hierarchical clusterings. Here we unify the comparison of disjoint, overlapping, and hierarchically structured clusterings by proposing a new element-centric framework: elements are compared based on the relationships induced by the cluster structure, as opposed to the traditional cluster-centric philosophy. We demonstrate that, in contrast to standard clustering similarity measures, our framework does not suffer from critical biases and naturally provides unique insights into how the clusterings differ. We illustrate the strengths of our framework by revealing new insights into the organization of clusters in two applications: the improved classification of schizophrenia based on the overlapping and hierarchical community structure of fMRI brain networks, and the disentanglement of various social homophily factors in Facebook social networks. The universality of clustering suggests far-reaching impact of our framework throughout all areas of science.
Additional file 1 of Exploring associations between positive and negative valanced parental comments about adolescents’ bodies and eating and eating problems: a community study
Creators: name: Dahill, Lucy M.
name: Morrison, Natalie M. V.
name: Mannan, Haider
name: Mitchison, Deborah
name: Touyz, Stephen
name: Bussey, Kay
name: Trompeter, Nora
name: Hay, Phillipa
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1. Multivariate Assumption Checks. A detailed outline of the multivariate process check
title: 01_0408
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
MOESM3 of A novel immortalized hepatocyte-like cell line (imHC) supports in vitro liver stage development of the human malarial parasite Plasmodium vivax
Creators: name: Yongyut Pewkliang
name: Siriwan Rungin
name: Kaewta Lerdpanyangam
name: Apisak Duangmanee
name: Phongthon Kanjanasirirat
name: Phichaya Suthivanich
name: Khanit Sa-Ngiamsuntorn
name: Suparerk Borwornpinyo
name: Jetsumon Sattabongkot
name: Rapatbhorn Patrapuvich
name: Suradej Hongeng
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 3: Figure S3. Immortalized hepatocyte-like cells (imHCs) supported Plasmodium vivax liver-stage development. Representative immunofluorescence images of P. vivax exoerythocytic forms (EEs) in imHCs on day 10 post infection. EEs were visualized using antibodies against parasite UIS4 (red). The hepatocyte nuclei were stained using DAPI. Mature schizonts containing numerous merozoites were observed on day 10 post-infection. Scale bar = 10 μm.
de Sitter invariant special relativity and galaxy rotation curves
Creators: name: Araujo, A.
name: Lopez, D. F.
name: Pereira, J. G.
Publisher: name: arXiv
Year: 2017
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Owing to the existence of an invariant length at the Planck scale, Einstein special relativity breaks down at that scale. A possible solution to this problem is arguably to replace the Poincaré invariant Einstein special relativity by a de Sitter invariant special relativity. In addition to reconciling Lorentz symmetry with the existence of an invariant length, such replacement produces concomitant changes in all relativistic theories, including general relativity, which becomes what we have called 'de Sitter modified general relativity'. In this paper, the Newtonian limit of this theory is used to study the circular velocity of stars around the galactic center. It is shown that the de Sitter modified Newtonian force---which includes corrections coming from the underlying local kinematics---could possibly explain the rotation curve of galaxies without the necessity of supposing the existence of a dark matter halo.
description: 12 pages, 1 figure. V2: presentation changes aiming at clarifying the text, 13 pages, 1 figure; matches published version. arXiv admin note: text overlap with arXiv:1704.02120
Preliminary VOSviewer Analysis
Creators: name: Alghoush, Mohamad
name: Vian Ahmed
name: Zaino, Rami
name: Alhammadi, Ahmed Mohamed
Publisher: name: OSF Registries
Year: 2024
Subjects: Bibliometric Analysis
CO2 Emissions
Carbon Emissions
Climate Change
EV Technology
Electric Vehicles
Energy Efficiency
Environmental Impact
Fleet Electrification
Green Technology
Greenhous Gas Emissions
Organizational Change
Policy and Regulation
Sustainable Transportation
Systematic Review
Technology
Transportation Policy
Urban Mobility
Vehicle Emissions

description: VOSviewer's Preliminary Results (Bibliometric Analysis)
Magnetically Activated Rotational Vacuum Friction
Creators: name: Pan, Deng
name: Xu, Hongxing
name: de Abajo, F. Javier García
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We predict the existence of a torque acting on an isotropic neutral nanosphere activated by a static magnetic field when the particle temperature differs from the surrounding vacuum. This phenomenon originates in time-reversal symmetry breaking of the particle interaction with the vacuum electromagnetic field. We present a rigorous quantum treatment of photons and particle excitations that leads to a nonzero torque even in a motionless particle. We also find that the dynamical evolution of the particle temperature and rotation frequency follow an exotic dynamics, including spontaneous changes in the rotation direction. Magnetically activated thermal vacuum torques open a unique avenue for the investigation of the effect of time-reversal symmetry-breaking in thermal and Casimir physics.
description: 8 pages, 4 figures, 64 references, self-contained theoretical derivations
Additional file 1 of Glitazones and alpha-glucosidase inhibitors as the second-line oral anti-diabetic agents added to metformin reduce cardiovascular risk in Type 2 diabetes patients: a nationwide cohort observational study
Creators: name: Chan, Cheng-Wei
name: Yu, Chu-Leng
name: Lin, Jiunn-Cherng
name: Hsieh, Yu-Cheng
name: Lin, Che-Chen
name: Hung, Chen-Ying
name: Li, Cheng-Hung
name: Liao, Ying-Chieh
name: Lo, Chu-Pin
name: Huang, Jin-Long
name: Lin, Ching-Heng
name: Wu, Tsu-Juey
Publisher: name: figshare
Year: 2021
Subjects: Molecular Biology
Pharmacology
Chemical Sciences not elsewhere classified

description: Additional file 1: Table S1. Hazard ratios of MACE in patients receiving different 2nd-line anti-diabetic agents with or without ACEI/ARBs and statins. Table S2. Hazard ratios of MACE in patients receiving pioglitazone and rosiglitazone as the 2nd-line anti-diabetic agents compared to SU.
Additional file 3 of Routes of administration, reasons for use, and approved indications of medical cannabis in oncology: a scoping review
Creators: name: Vinette, Billy
name: Côté, José
name: El-Akhras, Ali
name: Mrad, Hazar
name: Chicoine, Gabrielle
name: Bilodeau, Karine
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 3.
title: ADCO, Ordre cistercien : comptes (1499-1515) (11 H 1162), f. 00017
Creators: name: de la Côte-d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2019
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: comptes

description: Ordre cistercien : comptes (1499-1515), Archives départementales de la Côte-d'Or, (11 H 1162). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Ordre cistercien : comptes (1499-1515), Archives départementales de la Côte-d'Or, (11 H 1162), f. 00017, in Projet CBMA - Corpus Burgundiae Medii Aevi \[Ressource en ligne\], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Analyzing the Robustness of Nearest Neighbors to Adversarial Examples
Creators: name: Wang, Yizhen
name: Jha, Somesh
name: Chaudhuri, Kamalika
Publisher: name: arXiv
Year: 2017
Subjects: subject: Machine Learning (stat.ML)
subject: Cryptography and Security (cs.CR)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: Motivated by safety-critical applications, test-time attacks on classifiers via adversarial examples has recently received a great deal of attention. However, there is a general lack of understanding on why adversarial examples arise; whether they originate due to inherent properties of data or due to lack of training samples remains ill-understood. In this work, we introduce a theoretical framework analogous to bias-variance theory for understanding these effects. We use our framework to analyze the robustness of a canonical non-parametric classifier - the k-nearest neighbors. Our analysis shows that its robustness properties depend critically on the value of k - the classifier may be inherently non-robust for small k, but its robustness approaches that of the Bayes Optimal classifier for fast-growing k. We propose a novel modified 1-nearest neighbor classifier, and guarantee its robustness in the large sample limit. Our experiments suggest that this classifier may have good robustness properties even for reasonable data set sizes.
MOESM2 of A novel immortalized hepatocyte-like cell line (imHC) supports in vitro liver stage development of the human malarial parasite Plasmodium vivax
Creators: name: Yongyut Pewkliang
name: Siriwan Rungin
name: Kaewta Lerdpanyangam
name: Apisak Duangmanee
name: Phongthon Kanjanasirirat
name: Phichaya Suthivanich
name: Khanit Sa-Ngiamsuntorn
name: Suparerk Borwornpinyo
name: Jetsumon Sattabongkot
name: Rapatbhorn Patrapuvich
name: Suradej Hongeng
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 2: Figure S2. Immortalized hepatocyte-like cells (imHCs) were susceptible to Plasmodium vivax liver-stage infection. Representative immunofluorescence images depict P. vivax exoerythocytic forms (EEs) in imHCs on days 4 and 7 post infection. Anti-UIS4 (red) was used to identify EEs. The hepatocyte nuclei were stained using DAPI. Schizonts and small EEs were observed on day 7 post-infection. Scale bar = 5 μm.
Large-type Artin groups are systolic
Creators: name: Huang, Jingyin
name: Osajda, Damian
Publisher: name: arXiv
Year: 2017
Subjects: subject: Group Theory (math.GR)
subject: FOS: Mathematics

description: We prove that Artin groups from a class containing all large-type Artin groups are systolic. This provides a concise yet precise description of their geometry. Immediate consequences are new results concerning large-type Artin groups: biautomaticity; existence of $EZ$-boundaries; the Novikov conjecture; descriptions of finitely presented subgroups, of virtually solvable subgroups, and of centralizers for infinite order elements; the Burghelea conjecture; existence of low-dimensional models for classifying spaces for some families of subgroups.
description: final preprint version, to appear in Proc. Lond. Math. Soc