Additional file 1 of Reprogramming of the wheat transcriptome in response to infection with Claviceps purpurea, the causal agent of ergot
Creators: name: Tente, Eleni
name: Ereful, Nelzo
name: Rodriguez, Anyela Camargo
name: Grant, Paul
name: O’Sullivan, Donal M.
name: Boyd, Lesley A.
name: Gordon, Anna
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 1: Fig. S1: MA plots for wheat transcripts at 10 mins, 1 h and 24 h. Loess curves (red/blue) were drawn along with the line of symmetry at M = 0 (yellow). The blue Loess curve are smoothened curves set at family = “symmetric”. The red is a regular Loess curve (M ~ A). In some figures, only one line is visible since two/all curves may overlap. Fig. S2: MA plots for wheat transcripts at 48 h, 72 h, 5 days, and 7 days. Loess curves (red/blue) were drawn along with the line of symmetry at M = 0 (yellow). The blue Loess curve are smoothened curves set at family = “symmetric”. The red is a regular Loess curve (M ~ A). In some figures, only one line is visible since two/all curves may overlap. To demonstrate the asymmetric distribution of points, MA plots were generated using both wheat (blue arrow) and C. purpurea (red) transcripts. Table S1: Percentage alignment rates of pair-end reads from 114 Mock and Cp-inoculated libraries against the International Wheat Genome Sequencing Consortium (IWGSC) wheat genomic reference from wheat variety Chinese Spring [30]. Table S2: Table of all hormone-associated genes differentially expressed in base tissue. Red represents up-regulated genes and green down-regulated genes. A schematic representation of the stages of Claviceps purpurea development in the wheat ovary at each time point is shown at the top of the table. Table S3: Table of all hormone-associated genes differentially expressed in transmitting tissue. Red represents up-regulated genes and green down-regulated genes. A schematic representation of the stages of Claviceps purpurea development in the wheat ovary at each time point is shown at the top of the table. Table S4: Table of all hormone-associated genes differentially expressed in stigma tissue. Red represents up-regulated genes and green down-regulated genes. A schematic representation of the stages of Claviceps purpurea development in the wheat ovary at each time point is shown at the top of the table. Table S5: Table of all defence-related genes differentially expressed in stigma tissue. Red represents up-regulated genes and green down-regulated genes. A schematic representation of the stages of Claviceps purpurea development in the wheat ovary at each time point is shown at the top of the table. Table S6: Table of all defence-related genes differentially expressed in transmitting tissue. Red represents up-regulated genes and green down-regulated genes. A schematic representation of the stages of Claviceps purpurea development in the wheat ovary at each time point is shown at the top of the table. Table S7: Table of all defence-related genes differentially expressed in base tissue. Red represents up-regulated genes and green down-regulated genes. A schematic representation of the stages of Claviceps purpurea development in the wheat ovary at each time point is shown at the top of the table.