cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Smaragdina xanthaspis
Creators: name: Bezdċk, Jan
name: Regalin, Renato
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Smaragdina
Smaragdina xanthaspis

description: Smaragdina xanthaspis (Germar, 1824)
Clytra xanthaspis Germar, 1824: 547 (original description).
Cyaniris bicoloripes Pic, 1922: 27 (original description), syn. nov.
Type localities. Clytra xanthaspis: ‘Germania’. Cyaniris bicoloripes: ‘Angora’ [= Turkey, Ankara].
Type material examined. Clytra xanthaspis: Not examined.
Cyaniris bicoloripes: SYNTYPES: ♀, ‘ Angora [w, h] // type [w, h] // bicoloripes / n sp [w, h] // TYPE [r, p]’ (MNHN – coll. Pic); ♂, ‘ Angora [w, h] // type [w, h]’ (MNHN – coll. Pic).
Distribution. Europe, Turkey, Caucasus, Near East (for details see REGALIN & MEDVEDEV 2010b).
Comments. Cyaniris bicoloripes was listed as a suspected synonym of S. xanthaspis in the Palaearctic catalogue (REGALIN & MEDVEDEV 2010b). After examination of two syntypes of C. bicoloripes we can conħrm that both species are conspeciħc and thus C. bicoloripes is synonymized here with S. xanthaspis.
description: Published as part of Bezdċk, Jan & Regalin, Renato, 2015, Identity of species-group taxa of the Western Palaearctic Clytrini (Coleoptera: Chrysomelidae) described by Maurice Pic and Louis Kocher, pp. 1-114 in Acta Entomologica Musei Nationalis Pragae (suppl.) (suppl.) 55 on page 42, DOI: 10.5281/zenodo.4272771
Additional file 3: Table S3. of Assessment of complementary feeding of Canadian infants: effects on microbiome & oxidative stress, a randomized controlled trial
Creators: name: Qasem, Wafaa
name: Azad, Meghan
name: Hossain, Zakir
name: Elnaz Azad
name: Jorgensen, Sarah
name: Juan, Sandra Castillo San
name: Chenxi Cai
name: Khafipour, Ehsan
name: Trust Beta
name: L. Roberts
name: Friel, James
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Science Policy

description: Selective minerals intake before and after introduction of CFs in the three study groups. Description of data: this table presents selective minerals intake of the infants of each feeding group. The mean intakes of infants were compared between the three groups and within the three groups. (DOCX 75 kb)
Harvesting and Storing Fresh Garden Vegetables
Creators: name: Colt, Michael
name: Raidl, Martha
name: Robbins, Jo Ann
Publisher: name: University of Idaho Extension
Year: 2003
Subjects: short-season-high-altitude
gardens
fruits-nuts
Forestry
Wildlife

description: Harvesting vegetables at the right stage of maturity and storing them properly helps ensure top taste, nutrition and storage life. This publication explains how, covering vegetables from asparagus to turnips and giving the nutritional profile of each.
Premiums and Discounts for Market Beef Cows and Bulls Sold at Auction
Creators: name: Gray, Wilson
name: Panting, Rauhn
name: Ahola, Jason
name: Glaze, Benton
name: Jensen, K.
name: Hamilton, Shanna
name: Kraich, Kara
name: Baker, Sarah
name: Rimbey, Neil
Publisher: name: University of Idaho Extension
Year: 2015
Subjects: business-management-marketing
animals
Agriculture - Animals & Livestock
beef-cattle
agricultural-economics
Agriculture
Business

description: The results of the beef quality audits reported here will help beef producers to optimize the value of their market (cull) beef cows and bulls with the ultimate goal of improving the quality and consistency of market animals. The study collected data at 10 major livestock auctions in California, Idaho and Utah and identified factors that can result in premiums or discounts from as little as $1/cwt to as much as $16/cwt.
Additional file 4: of Long-term microfluidic tracking of coccoid cyanobacterial cells reveals robust control of division timing
Creators: name: Feiqiao Yu
name: Willis, Lisa
name: Chau, Rosanna
name: Zambon, Alessandro
name: Horowitz, Mark
name: Devaki Bhaya
name: Kerwyn Huang
name: Quake, Stephen
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Computational Biology

description: Additional Methods and Tables S1â  S3. Table S1. Summary of simulations of cells grown under continuous illumination. Table S2. Summary of simulations of cells grown under 12-h light-dark illumination cycles. Table S3. Parameters used for cell-size regulation simulations. (DOCX 56Â kb)
Additional file 9: of Enhancing circadian clock function in cancer cells inhibits tumor growth
Creators: name: Kiessling, Silke
name: Beaulieu-Laroche, Lou
name: Blum, Ian
name: Landgraf, Dominic
name: Welsh, David
name: Kai-Florian Storch
name: Labrecque, Nathalie
name: Cermakian, Nicolas
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: 60506 Virology

description: Immune cell infiltration, apoptosis and cell cycle arrest in NSG mice. Representative flow cytometry dot plots and quantification for neutrophils (F4/80 lowLy-6Ghigh, gated on CD11b+) (A), monocytes (CD11bhighLy-6Chigh, gated on F4/80+) (B), macrophages (F4/80highLy-6C- gated on CD11b+) (C), histogram and quantification for apoptosis (Annexin V) stained (red) and unstained (grey) cells (D) and dot plots and quantification of proliferation (Ki67) (E) at the indicated CTs in s.c. tumors after repeated intra-tumoral PBS or DEX injection every 2 days for 8–11 days in B16 s.c. tumors of NSG mice collected at CT14 (n = 4 mice/group, Mann-Whitney rank sum test: p > 0.05). (PDF 812 kb)
Speleocola nolae Goff and Brennan 1977
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Speleocola
Speleocola nolae

description: Speleocola nolae Goff and Brennan, 1977a:
NEO
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 180, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Performance of Forage and Conservation Grasses in Northern Idaho
Creators: name: Griggs, T.C.
name: Kingery, P.E.
Publisher: name: University of Idaho Extension
Year: 1998
Subjects: forage-crops-pasture
crop
Agriculture - Crop Production
natural-resource-conservation
Agriculture
Forestry

description: This publication summarizes the methods and results of two University of Idaho multi-year grass studies that aimed to evaluate the productivity of various perennial, cool-season grasses for commercial forage production and soil conservation purposes in the Palouse region.
Growing Currants, Gooseberries and Jostaberries in the Inland Northwest and Intermountain West
Creators: name: Barney, Danny
name: Fallahi, Esmaeil
Publisher: name: University of Idaho Extension
Year: 2009
Subjects: flowers-shrubs-ornamentals
gardens
Agriculture - Small-Acreage Farming
crop
Agriculture - Crop Production
berries-grapes
Agriculture

description: This 21-page publication provides basic information on growing these fruits, which are common in Europe. Includes detailed lists of recommended cultivars, as well as information on fertilization, planting, pruning, pest control and harvesting.
4-H Dutch Oven Cooking, Helper's Guide
Creators: name: Buck, Julie
name: Robertson, Amy
name: Shelstad, Nancy
Publisher: name: University of Idaho Extension
Year: 2019
Subjects: 4-H Youth Development
Forestry
Wildlife

description: Dutch oven cooking is a special activity that can be enjoyed by all. The fun comes not only from eating, but also on the way to the finished product. This project was written for those who love being in the outdoors, whether that means the mountains, at a state campground or right in your own backyard. There are two manuals for this project. Unit 1 gives you the basics to get started. Unit 2 explores the history of the Dutch oven, emphasizes emperature coordination and control of Dutch ovens, and focuses on cooking meats and baking yeast breads.Because of the nature of this project (lifting heavy Dutch ovens, lighting briquettes and handling hot coals and ovens), the recommended minimum age is 12 years old.Note to project helpers: There is one project helper's guide for both units of this project. This guide includes additional information and helpful advice for you, the adult, to guide youth through the Dutch oven project.
Additional file 16: Figure S11. of Long-term microfluidic tracking of coccoid cyanobacterial cells reveals robust control of division timing
Creators: name: Feiqiao Yu
name: Willis, Lisa
name: Chau, Rosanna
name: Zambon, Alessandro
name: Horowitz, Mark
name: Devaki Bhaya
name: Kerwyn Huang
name: Quake, Stephen
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Hematology

description: Microfluidic cell culture chip fabrication process. To make the cell culture chip, photoresist was used to build structures on silicon wafers, using standard photolithography to create molds. PDMS was poured over the flow-layer mold and spun on the control-layer mold. Both molds were then bonded together on a glass slide. (PDF 286Â kb)
Additional file 2: Figure S2. of 2.7 million samples genotyped for HLA by next generation sequencing: lessons learned
Creators: name: Schöfl, Gerhard
name: Lang, Kathrin
name: Quenzel, Philipp
name: Böhme, Irina
name: Sauter, Jürgen
name: Hofmann, Jan
name: Pingel, Julia
name: Schmidt, Alexander
name: Lange, Vinzenz
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Correlation between DNA concentrations derived from the first and second swab provided by donors. (PDF 408 kb)
Spring Vegetable Planting Guide for Idaho
Creators: name: West, Andres
Publisher: name: University of Idaho Extension
Year: 2020
Subjects: general
gardens
plant-diseases
short-season-high-altitude

description: Idaho's diverse climate makes it a challenging place to grow vegetables, so if you're planning to start a vegetable garden this spring, this planting guide is for you. It provides basic, crucial information so that you can set up your garden properly, including how to identify your hardiness zone, growing-season length and number of frost-free days factors that will improve your selection of adapted cultivars. A handy chart provides at a glance planting date ranges for cool-season and warm-season crops.
Additional file 14: Figure S9. of Long-term microfluidic tracking of coccoid cyanobacterial cells reveals robust control of division timing
Creators: name: Feiqiao Yu
name: Willis, Lisa
name: Chau, Rosanna
name: Zambon, Alessandro
name: Horowitz, Mark
name: Devaki Bhaya
name: Kerwyn Huang
name: Quake, Stephen
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Evolutionary Biology
subject: Ecology
subject: Developmental Biology
subject: Computational Biology

description: Cells were slightly smaller when grown under light-dark cycles. (a, b) Left: birth (a) and division (b) volumes as a function of time for cells grown under continuous illumination (blue) and light-dark cycles (orange). Right: volume distributions. There is no birth-volume data in the dark since cell division did not occur in the dark (Fig.Â 3d). (PDF 400Â kb)
Additional file 1: Figure S1. of Obesity accelerates epigenetic aging in middle-aged but not in elderly individuals
Creators: name: Nevalainen, Tapio
name: Kananen, Laura
name: Marttila, Saara
name: Jylhävä, Juulia
name: Mononen, Nina
name: Kähönen, Mika
name: Raitakari, Olli
name: Hervonen, Antti
name: Jylhä, Marja
name: Lehtimäki, Terho
name: Hurme, Mikko
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: The quality control of the DNA methylation of old DNA samples. YFS1986 samples (young adults) were collected 30 years ago, and the methylation profiling was performed in different facility than others. To ensure that these samples did not include technical biases, we compared the mean methylation of X chromosome in YFS1986 (X axis) and YFS2011 (Y axis) follow-up samples. These two cohorts cannot be distinguished from the plot, and only gender stands out, as expected in the case of DNA methylation. (DOCX 59 kb)
Additional file 1: Figure S1. of Obesity accelerates epigenetic aging in middle-aged but not in elderly individuals
Creators: name: Nevalainen, Tapio
name: Kananen, Laura
name: Marttila, Saara
name: Jylhävä, Juulia
name: Mononen, Nina
name: Kähönen, Mika
name: Raitakari, Olli
name: Hervonen, Antti
name: Jylhä, Marja
name: Lehtimäki, Terho
name: Hurme, Mikko
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Mental Health

description: The quality control of the DNA methylation of old DNA samples. YFS1986 samples (young adults) were collected 30 years ago, and the methylation profiling was performed in different facility than others. To ensure that these samples did not include technical biases, we compared the mean methylation of X chromosome in YFS1986 (X axis) and YFS2011 (Y axis) follow-up samples. These two cohorts cannot be distinguished from the plot, and only gender stands out, as expected in the case of DNA methylation. (DOCX 59 kb)
Planning an Idaho Vegetable Garden
Creators: name: Bell, Susan
name: Colt, Michael
name: Homan, Hugh
name: Wilson, Dale
Publisher: name: University of Idaho Extension
Year: 1996
Subjects: vegetables-herbs
gardens
lawns
pests-pesticides
short-season-high-altitude

description: Four gardening experts provide successful gardening methods. Discusses site selection, garden layout, weed and insect control, and crop by crop planting instructions. Also contains a thorough list of related gardening publications. Reviewed in Sunset magazine as "a great new booklet to help beginning gardeners."
Additional file 4: Table S2. of Obesity accelerates epigenetic aging in middle-aged but not in elderly individuals
Creators: name: Nevalainen, Tapio
name: Kananen, Laura
name: Marttila, Saara
name: Jylhävä, Juulia
name: Mononen, Nina
name: Kähönen, Mika
name: Raitakari, Olli
name: Hervonen, Antti
name: Jylhä, Marja
name: Lehtimäki, Terho
name: Hurme, Mikko
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Biotechnology
subject: Evolutionary Biology
subject: Sociology
subject: FOS: Sociology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: The linear regression model explaining the variation in ΔAGE of middle-aged adults. We used BMI, gender, smoking, and alcohol consumption as predictors. Of these, the BMI was the best independent predictor of ΔAGE (p=0.002). The regression method was stepwise, criteria=PIN(0.05) POUT(0.10). (DOCX 14 kb)
Was wirkt in der Schule? Einschätzungen von Eltern zu Hatties Faktoren
Creators: name: Schnabel, Ina
Publisher: name: PsychArchives
Year: 2024
Subjects: subject: 150

description: Eltern sind ein wichtiger Teil des Bildungssystems und der Bildungserfolg in Deutschland hängt immer noch im hohen Maße vom Elternhaus ab. Die Entscheidungen und das Verhalten von Eltern haben somit einen großen Einfluss. Daher ist es wichtig zu untersuchen, wie Eltern die Wirksamkeit verschiedener Einflussfaktoren auf den Lernerfolg einschätzen und inwieweit diese Einschätzungen mit den Erkenntnissen der aktuellen Schuleffektivitätsstudien übereinstimmen. Die vorliegende Studie zielt darauf ab, die Einschätzungen der Wirksamkeit bestimmter Faktoren auf den Lernerfolg durch Eltern zu erfassen. Zu diesem Zweck werden die Eltern gebeten, die Effektstärke von 16 Faktoren auf den Lernerfolg von Schüler*innen zu schätzen. Im Anschluss erfolgt ein Vergleich dieser geschätzten Effektstärken mit den Effektstärken dieser Faktoren in Hatties Metasynthese (Hattie, 2023). Zudem wird untersucht, ob die Erfahrung als Elternteil mit einer besseren Einschätzung einhergeht.
Scheduling the Final Irrigation for Wheat and Barley
Creators: name: Neibling, Howard
name: Rogers, Christopher
name: Qureshi, Z.
Publisher: name: University of Idaho Extension
Year: 2017
Subjects: Agriculture - Irrigation
crop
Agriculture - Crop Production
agricultural-economics
water
Agriculture - Buildings & Equipment
Agriculture
Business
Cereals
Forestry

description: Water management during grain formation is more important than ever, particularly with urban expansion and the subsequent increase in municipal water use. By investigating crop water-use patterns and the impact of irrigation timing and nitrogen-application rates and more, this six-page bulletin identifies the optimum timing and amount of the final irrigation application farmers need to profitably grow wheat and barley.
Additional file 4: Table S2. of Obesity accelerates epigenetic aging in middle-aged but not in elderly individuals
Creators: name: Nevalainen, Tapio
name: Kananen, Laura
name: Marttila, Saara
name: Jylhävä, Juulia
name: Mononen, Nina
name: Kähönen, Mika
name: Raitakari, Olli
name: Hervonen, Antti
name: Jylhä, Marja
name: Lehtimäki, Terho
name: Hurme, Mikko
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Biotechnology
subject: Evolutionary Biology
subject: Sociology
subject: FOS: Sociology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Mental Health

description: The linear regression model explaining the variation in ΔAGE of middle-aged adults. We used BMI, gender, smoking, and alcohol consumption as predictors. Of these, the BMI was the best independent predictor of ΔAGE (p=0.002). The regression method was stepwise, criteria=PIN(0.05) POUT(0.10). (DOCX 14 kb)
Nutrient Management Guidelines for Russet Burbank Potatoes
Creators: name: Stark, Jeffrey
name: Westermann, Dale
name: Hopkins, Bryan
Publisher: name: University of Idaho Extension
Year: 2004
Subjects: potatoes
crop
Agriculture - Crop Production
Agriculture - Fertilizers & Soils
Agriculture - On-Farm Testing
Agriculture

description: Efficient potato nutrient management systems are designed to ensure that all essential plant nutrients are available in appropriate amounts and at the most beneficial time to provide for optimal vine and tuber growth. Studies conducted in southern Idaho show that with proper management, growers can obtain maximum net economic return without significantly increasing the impact on environmental quality.
title: Investigations of the Site of the Ancient Town of Kalos Limen. Archaeological Survey of 2019 and Excavations of 2021–2022
Creators: name: Eremeeva, Anna
Publisher: name: Hyperboreus 30: 1 (2024) 8–19
Year: 2024

description: In 2019, the archaeological mission of the State Hermitage Museum carried out an extensive archaeological survey on the site of the ancient town of Kalos Limen and on its necropolis and chora. As a result of the survey, excavations were conducted at Kalos Limen during the seasons of 2021–2022. These excavations led to the discovery of a large residential complex, which existed with some modifications from the early 4th century BC to the first third of the 3rd century BC. The residential structure was destroyed in the first third of the 3rd century BC, which should be associated with the nomads’ attack at the chora of Chersonesos. The ruins of the residential structure apparently have never been restored. Partly it was turned into a dump in antiquity.
description: В 2019 году силами экспедиции Государственного Эрмитажа были проведены масштабные археологические разведки на городище Калос Лимен, а также его некрополе и близлежащей хоре. По результатам разведок, в сезонах 2021–2022 гг. на городище Калос Лимен произведены раскопки, результатом которых стало бнаружение крупного жилого комплекса, просуществовавшего с некоторыми перестройками с первой четверти IV в. до н. э. до первой трети III в. до н. э. Эллинистический жилой комплекс, судя по клейменому амфорному материалу, погибает в первой трети III в. до н. э., что связано с нападением номадов на хору Херсонеса Таврического. Руины жилого комплекса, по-видимому, не были восстановлены, часть его превратилась в свалку еще в древности.
Additional file 6: Figure S5. of 2.7 million samples genotyped for HLA by next generation sequencing: lessons learned
Creators: name: Schöfl, Gerhard
name: Lang, Kathrin
name: Quenzel, Philipp
name: Böhme, Irina
name: Sauter, Jürgen
name: Hofmann, Jan
name: Pingel, Julia
name: Schmidt, Alexander
name: Lange, Vinzenz
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified

description: Mean primer dimer rates of HLA loci for different workflows. Error bars show standard deviation. (PDF 5 kb)
Additional file 1: Figure S1. of 2.7 million samples genotyped for HLA by next generation sequencing: lessons learned
Creators: name: Schöfl, Gerhard
name: Lang, Kathrin
name: Quenzel, Philipp
name: Böhme, Irina
name: Sauter, Jürgen
name: Hofmann, Jan
name: Pingel, Julia
name: Schmidt, Alexander
name: Lange, Vinzenz
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Inorganic Chemistry
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: Prevalence of low-quality samples over time and for different sample provenances (DE, Germany; PL, Poland; UK, United Kingdom). (PDF 5 kb)
D4.1 - Infrastructure & Services Definition (a)
Creators: name: Christodoulou, Lakis
name: Sophocleous, Marios
name: Philippou, Philippos
Publisher: name: Zenodo
Year: 2023
Subjects: EO4EU
EARTHOBSERVATION
Infrastucture
services

description: This document is entitled “D4.1 – Infrastructure & Services Definition” and represents the first deliverable of Work Package 4 of the EO4EU project. This document focuses on the following outcomes: • List the services and components of the EO4EU platform and their respective purpose. • Provide an initial snapshot of the infrastructure requirements for the platform’s components & services. • Provide an overview of the available infrastructure to be utilized for hosting the EO4EU platform. • Explain the methodology on how the multi-cloud infrastructure can be achieved encompassing all the available infrastructure resources. • State on which infrastructure each component or group (Tiers) of components/services will be hosted and the reasoning behind that choice. • Provide a summarized version of infrastructure requirements taking into account the overall needs of all the components collectively. The 3 main infrastructures available are the WEkEO, CINECA Cloud and CINECA High Performance Computer (HPC). WEkEO infrastructure will host the Platform Controller, CINECA Cloud will host all other components utilizing a Kubernetes Multi-Cluster and the Machine Learning/Inference Server service will be hosted by CINECA HPC, allowing for the best possible performance for ML model trainings. The specific computational, memory, storage and Graphics Processing Unit capabilities are summaries at the end of section 4.
Speleocola secunda Brennan and Jones 1960
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Actinedida
Trombiculidae
Speleocola
Speleocola secunda

description: Speleocola secunda Brennan and Jones, 1960:
NEO
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 180, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Nasusbilharzia Flores & Viozzi & Casalins & Loker & Brant 2021, n. gen.
Creators: name: Flores, Verónica
name: Viozzi, Gustavo
name: Casalins, Laura
name: Loker, Eric Samuel
name: Brant, Sara Vanessa
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Diplostomida
Schistosomatidae
Nasusbilharzia

description: Nasusbilharzia n. gen.
Type species: Nasusbilharzia melancorhypha n. sp.
Etymology: The prefix “ nasus” come from the Latin and refers to the site of infection: the nasal tissue. The suffix “bilharzia” is another name describing a schistosome.
Diagnosis: Plathyhelminthes; Trematoda; Digenea; Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosmatinae. Long filamentous worms, somewhat flattened dorso-ventrally. Posterior end of body with blunt termination, not wider than any other part of the body. Oral sucker and ventral sucker present and well developed. Oral sucker terminal. Ventral sucker larger than oral sucker, retractable. Esophagus bifurcating at level of anterior border of ventral sucker. Gynaecophoric canal well-developed starting some distance posterior to ventral sucker. Testes numerous, starting in anterior third of body, posterior to gynaecophoric canal. Cirrus sac present, containing an armed cirrus. Genital pore at anterior end of gynaecophoric canal. Eggs elongated with an asymmetrical median bulge, with slender and curved process in one end.
description: Published as part of Flores, Verónica, Viozzi, Gustavo, Casalins, Laura, Loker, Eric Samuel & Brant, Sara Vanessa, 2021, A new schistosome (Digenea: Schistosomatidae) from the nasal tissue of South America black-necked swans, Cygnus melancoryphus (Anatidae) and the endemic pulmonate snail Chilina gibbosa, pp. 404-418 in Zootaxa 4948 (3) on pages 406-409, DOI: 10.11646/zootaxa.4948.3.5, http://zenodo.org/record/4629154
Additional file 1: Figure S1. of 2.7 million samples genotyped for HLA by next generation sequencing: lessons learned
Creators: name: Schöfl, Gerhard
name: Lang, Kathrin
name: Quenzel, Philipp
name: Böhme, Irina
name: Sauter, Jürgen
name: Hofmann, Jan
name: Pingel, Julia
name: Schmidt, Alexander
name: Lange, Vinzenz
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Inorganic Chemistry
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences

description: Prevalence of low-quality samples over time and for different sample provenances (DE, Germany; PL, Poland; UK, United Kingdom). (PDF 5 kb)
Tips for Entrepreneurs: Regulations for Selling Prepared Foods
Creators: name: Dearien, Christy
name: Rumel, John
name: Lewin, Paul
name: Gooden, Kristen
Publisher: name: University of Idaho Extension
Year: 2019
Subjects: business-management-marketing
community
Business
Entrepreneurship

description: Part of the Tips for Entrepreneurs series, this two-page fact sheet provides information on how Idaho regulates the prepared food industry. Included are the types of food establishments that are subject to the Idaho Food Code, license requirements, and an overview of the license application process.
Evaluating LESA irrigation systems in potato production in southern and eastern Idaho
Creators: name: Liang, Xi
name: Neibling, William
name: Yang, Rui
Publisher: name: University of Idaho Extension
Year: 2019
Subjects: Agriculture - Irrigation
potatoes
crop
Agriculture - Crop Production
Agriculture

description: Low-elevation spray application (LESA) is an irrigation modification that places nozzles 1-2 feet aboveground. The lower nozzle height in LESA enables water droplets to spend less time in the air, which reduces water losses to wind drift and evaporation. LESA irrigation has seldom been investigated in potato production. This publication outlines three field experiments that were conducted in southern and eastern Idaho to evaluate potato tuber yields under LESA and traditional (MESA: mid-elevation spray application) irrigation methods. It addresses soil moisture, tuber yields, cost analysis, and conclusions and recommendations.
Tituboea chobauti
Creators: name: Bezdċk, Jan
name: Regalin, Renato
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Tituboea
Tituboea chobauti

description: Tituboea chobauti (Pic, 1896)
(Figs 26–27, 165–168)
Gynandrophthalma chobauti Pic, 1896c: 142 (original description).
Titubaea chobauti var. semijuncta Pic, 1918c: 18 (unavailable infrasubspeciħc name).
Type localities. Gynandrophthalma chobauti: ‘ Algérie Sud:Aïn Sefra’. Tituboea chobauti var. semijuncta: ‘ Algérie Sud:Ain Sefra’.
Type material examined. Gynandrophthalma chobauti: SYNTYPES: 1 ♀, ‘Sefra [w, h] // type [w, h] // TYPE [r, p] // Muséum Paris / 1958 / Col. M. Pic [w, p] // G. Chobauti Pic [w, h]’ (MNHN – coll. Pic); 1 ♂, ‘AÏN-SEFRA / Mai 1896 / Dr. A. CHOBAUT [w, p] // Type [red letters, w, p] // Titubaea / Chobauti / Pic / sub Gynandrophthalma [w, h]’ (MNHN – coll. Chobaut).
Original material of infrasubspeciħc entity. Tituboea chobauti var. semijuncta: 1♂, ‘A. Sefra / mai 96 [w, h] // Tit. minor? / Frm var.[w, h] // type.[w, h] // Titubaea [w, h] // v. semijuncta / Pic [w, h] // TYPE [r, p]’ (MNHN – coll.Pic).
Additional material examined. ALGERIA: Biskra, 9.iv.1894, 1 ♂, without name of collector (BMNH); Figuig, Dj. Grouz, 13.iv.1952, 1 ♂, W. Neugebauer leg. (SMNS). MOROCCO: Aouloug, 25.–26.iv.1996, 1 ♀, R. Šigut leg. (FKCC).
Distribution. Algeria, Egypt, Jordan, Morocco (REGALIN & MEDVEDEV 2010b).
Comments. Tituboea chobauti var. semijuncta was described in a publication containing also descriptions of subspecies (PIC 1918c), thus it became infrasubspeciħc according to Article 45.6.4 of the Code (ICZN 1999). Tituboea chobauti var. semijuncta is conspeciħc with T. chobauti.
Tituboea elegans Weise, 1898 described from Tanger (Morocco) may be conspeciħc with T. chobauti. However, we avoid proposing the new synonymy without the study of the relevant type specimens. Their deposition is presently unknown to us as they were not found in ZMHB or Naturhistoriska Riksmuseet, Stockholm that house the main parts of Weise ̓ s collection.
description: Published as part of Bezdċk, Jan & Regalin, Renato, 2015, Identity of species-group taxa of the Western Palaearctic Clytrini (Coleoptera: Chrysomelidae) described by Maurice Pic and Louis Kocher, pp. 1-114 in Acta Entomologica Musei Nationalis Pragae (suppl.) (suppl.) 55 on pages 47-48, DOI: 10.5281/zenodo.4272771
Additional file 1: Tables S1â  S5 of Prediagnostic plasma concentrations of organochlorines and risk of B-cell non-Hodgkin lymphoma in envirogenomarkers: a nested case-control study
Creators: name: Kelly, Rachel
name: Kiviranta, Hannu
name: Bergdahl, Ingvar
name: Palli, Domenico
name: Ann-Sofie Johansson
name: Botsivali, Maria
name: Vineis, Paolo
name: Vermeulen, Roel
name: Soterios Kyrtopoulos
name: Chadeau-Hyam, Marc
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: with additional results can be found in the Additional file documents; RKelly_Additional_files.docx. (DOCX 72 kb)
Additional file 2: of Costs and benefits of natural transformation in Acinetobacter baylyi
Creators: name: Hülter, Nils
name: Sørum, Vidar
name: Borch-Pedersen, Kristina
name: Liljegren, Mikkel
name: Utnes, Ane
name: Primicerio, Raul
name: Harms, Klaus
name: Johnsen, Pål
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Science Policy

description: Supplementary Methods. (DOCX 13.6 kb)
Tituboea cingulata
Creators: name: Bezdċk, Jan
name: Regalin, Renato
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Chrysomelidae
Tituboea
Tituboea cingulata

description: Tituboea cingulata (Lefèvre, 1883)
(Figs 28–29, 169–172)
Camptolenes cingulata Lefèvre, 1883: 150 (original description).
Antina [sic!] (Titubaea) arabica var. donceeli Pic, 1929a: 14 (original description), syn. nov.
Type localities. Camptolenes cingulata: ‘Arabie (env. d ̓ Aden)’ [= Yemen, Aden env.]. Antipa arabica var. donceeli: ‘Arabie’.
Type material examined. Camptolenes cingulata: SYNTYPES: 1 ♂, ‘ Aden [w, h] // Type [p] ♂ [w, h] // Ex-Musaeo / LEFÈVRE / 1894 [w, p] // Muséum Paris [p] / Collection / Lefèvre [w, h] // Lectotypus [p] / Camptolenes / cingulata Lef. [r, h] // Antipa 196 [p] 9 [h] / cingulata Lef. [h] / L. Medvedev det. [w, p]’ (MNHN – coll. Lefèvre); 1 ♀, ‘ Aden [w, h] // Type [p] ♀ [w, h] // Ex-Musaeo / LEFÈVRE / 1894 [w, p]’ (MNHN – coll. Lefèvre); 1 ♂ 1 ♀, ‘ Aden [w, h] // Ex-Musaeo / LEFÈVRE / 1894 [w, p]’ (MNHN – coll. Lefèvre).
Antipa arabica var. donceeli: SYNTYPE: ♂, ‘Arabie [w, h] // Type [w, h] // v. Donceeli / Pic [w, h] // TYPE [r, p]’ (MNHN – coll. Pic).
Distribution. Saudi Arabia, Yemen (REGALIN & MEDVEDEV 2010b), Djibouti (FAIRMAIRE 1886). The record from Djibouti is uncertain and needs veriħcation.
Comments. The publication year of Camptolenes cingulata is sometimes listed as 1884 (e.g. REGALIN & MEDVEDEV 2010b). As found by EVENHUIS (2002), the bi-monthly version of the Bulletin de la Société Entomologique de France with the description of C. cingulata was issued on 20 th September, 1883, while the quarterly version on 31 st January, 1884. Therefore the year of publishing is here corrected to 1883.
One male syntype of C. cingulata bears Medvedev ̓ s label ‘Lectotypus’ (Fig. 172). According to our knowlegde, Medvedev never published the lectotype designation of C. cingulata, thus all four type specimens are still treated as syntypes.
The syntype of Antipa arabica var. donceeli deposited in MNHN is without any doubts conspeciħc with T. cingulata, thus var. donceeli is proposed as its new junior subjective synonym.
description: Published as part of Bezdċk, Jan & Regalin, Renato, 2015, Identity of species-group taxa of the Western Palaearctic Clytrini (Coleoptera: Chrysomelidae) described by Maurice Pic and Louis Kocher, pp. 1-114 in Acta Entomologica Musei Nationalis Pragae (suppl.) (suppl.) 55 on page 48, DOI: 10.5281/zenodo.4272771
MOESM1 of Microbial community compositions in different functional zones of Carrousel oxidation ditch system for domestic wastewater treatment
Creators: name: Xu, Dong
name: Sitong Liu
name: Chen, Qian
name: Jinren Ni
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Computational Biology

description: Additional file 1: Table S1. Characteristics of the six representative full-scale WWTPs. Table S2: Raw and trimmed reads, Goodâ  s coverage, Chao1, ACE, Shannon, Simpson, and plus numbers of OTUs of the activated sludge samples.
The Economic Feasibility of Growing Wine Grapes in Idaho
Creators: name: Woodall, Stacie
name: Smathers, Robert
name: Taylor, Garth
Publisher: name: University of Idaho Extension
Year: 2002
Subjects: farm-enterprise-budgets
crop
Agriculture - Crop Production
berries-grapes
Agriculture
Business

description: Presents wine grape enterprise budgets for a typical Idaho vineyard and a current economic analysis of growing wine grapes in Idaho. The analysis indicates the typical vineyard would break even in 16 years. Includes tables detailing costs and returns for production years one through four and years five plus.
Reemplazando documentos perdidos o da ados en Idaho
Creators: name: Greenway, Surine
name: Richel, Karen
name: Porter, Nancy
Publisher: name: University of Idaho Extension
Year: 2016
Subjects: publicaciones
tools
Family

description: Los desastres naturales o los robos pueden da ar, destruir o extraviar documentos o archivos inform ticos importantes. Por lo tanto, es fundamental saber c mo reemplazarlos. Este bolet n de ocho p ginas le ense ar c mo hacerlo en Idaho, aunque los residentes de otros estados tambi n pueden encontrar esta informaci n til. Su contenido aborda veintiocho tipos de documentos, incluidos los documentos de adopci n, certificados de t tulos de educaci n, pasaportes, tarjetas de seguridad social y documentos hipotecarios.
How to Become USDA FSIS Inspected
Creators: name: Hamlett, Janna
Publisher: name: University of Idaho Extension
Year: 2024
Subjects: animals
Agriculture - Animals & Livestock
beef-cattle
food-preservation-safety
food-and-health
public-policy
Agriculture
Business
Entrepreneurship

description: Selling meat products successfully involves complying with regulations, particularly surviving a Food Safety Inspection Service (FSIS) inspection of your facility s slaughter and processing stages. Learn a little of the legal history driving current policy and how to navigate the application process in this six-page bulletin. Along with noting available onsite exemptions, it provides a workflow for preparing an application by discussing necessary actions like developing a Hazard Analysis Critical Control Point (HACCP) food-safety plan and writing and documenting Sanitation Standard Operating Procedures (SSOPs) to streamline the process. A copious number of helpful links provides access to the forms and other information to further help you get started.
Single-cell approaches for identifying transcriptional mechanisms of drug resistance in Triple Negative Breast Cancer
Creators: name: Calistri, Nicholas
Publisher: name: Oregon Health and Science University
Year: 2024
Subjects: subject: Breast Neoplasms
subject: Computational Biology
subject: Cancer
subject: Breast Cancer
subject: scRNA-seq

description: Triple Negative Breast Cancer (TNBC) is a complex malignancy subtype which commonly forms aggressive tumors with substantial stromal involvement. Unlike the Luminal and Her2+ breast cancer subtypes, TNBC tumors are unable to be targeted by highly specific therapies which exploit vulnerability in receptor expression to slow tumor growth. While some patients see initial benefit upon treatment with general or targeted chemotherapies, many patients relapse as their tumors adapt to the treatment and activate signaling pathways which allow them to survive therapy. In this, work I use an integrative experimental-computational approach to deeply profile TNBC tumor models during drug treatment and gain a mechanistic understanding of how transcriptional changes within malignant and stromal cells enable drug resistance.
Using AI for Detecting Clinical Deterioration: Insights and Responses from the Care Team
Creators: name: Shieh, Lisa
name: Jeong, Yejin
name: Smith, Margaret
name: Gallo, Robert
name: Westphal, Jerri
name: Florom-Smith, Aubrey
name: Knowlton, Lisa
name: Lin, Steven
Publisher: name: F1000 Research Limited
Year: 2024

description: Context:

An AI clinical deterioration model-enabled intervention implemented at a large academic medical center in 2021 was recently reported to have decreased the absolute risk of care escalations among inpatients by 10.4% over two years. This study aims to evaluate the experiences of nurses and physicians participating in this AI-enabled workflow.

Objective:

Assess the care team’s experiences and gather feedback on the AI-enabled clinical deterioration pathway,

including both the prediction tool and collaborative workflows that follow.

Study Design and Analysis:

From September 2023 to February 2024, our team distributed a comprehensive survey to the care team. We

analyzed the survey results using statistical methods and free text data was thematically analyzed using

Stanford’s secure instance of GPT-4.

Setting or Dataset:

An academic medical center (Stanford Health Care).

Population Studied:

Attending physicians, residents, interns, bedside nurses, resource nurses, and float nurses from general

surgery and hospital medicine inpatient units who had access to the AI-enabled clinical deterioration pathway.  The survey analysis cohort consisted of 125 participants.

Intervention/Instrument:

AI-enabled mobile alerts, and EHR best practice alerts based on Epic Deterioration Index prediction modelscores, followed by a standardized, multidisciplinary bedside huddle.

Outcome Measures:

SEIPS 2.0 model and RE-AIM frameworks were used to evaluate the implementation from the perspectives of nurses and physicians. One sample t-test and the Kruskal-Wallis test were used.

Results:

Both physicians and nurses often agreed with the tool’s determination of patients at high risk (M = 2.608 (SD = 0.69), p < 0.001). However, there were significant differences between physicians (n = 44) and nurses (n = 77) across various aspects, including knowledge gain, patient outcomes, satisfaction levels, perceived pathway value, and sustainability (p <.001). Nurses consistently showed higher satisfaction than physicians, who were neutral about the tool, workflow, and impact on patient care. Most participants expressed interest in obtaining more information about the model and suggested modifications to the workflow, documentation, and team huddle.

Conclusions:

Both physicians and nurses generally concurred with the tool’s identification of high-risk patients. However,

nurses displayed more favorable attitudes, engagement, and outlook in the intervention.
WORKSHOP: Fungal Genomics with Galaxy
Creators: name: Schwessinger, Benjamin
name: McTaggart, Alistair R.
name: Price, Gareth
name: Syme, Anna
name: Möller, Mareike
name: Tam, Rita
name: Luo, Zhenyan
Publisher: name: Zenodo
Year: 2024
Subjects: subject: Bioinformatics
subject: FOS: Computer and information sciences
subject: Analysis
subject: Fungi
subject: Genome assembly
subject: Genome annotation

description: This record includes training materials associated with the Bioplatforms Australia “Fungal Genomics with Galaxy Workshop”. This workshop took place over three days from 29-31 October 2024.

Event description

A three-day workshop organised by Bioplatforms Australia to introduce bioinformatics theory and practice to researchers, citizen scientists, and industry involved in Bioplatforms fungi-themed National Initiatives: Australian Functional Fungi Initiative, and Plant Pathogen Omics Initiative.

An in-person workshop, held over three days from ~9am-5pm. 

The workshop included a series of interleaved presentations about fungal genomics theory and practical tutorials using the Galaxy Australia analysis platform, as well as discussion sessions and presentations from some of the attendees. 

A breakdown of timings and topics is provided in the schedule.

Registration was open to project representatives across the Australian Functional Fungi, and Plant Pathogen Omics Initiative. 

Participation was free for registrants, and was supported by Bioplatforms National Initiatives. 

Number of participants = 38

Materials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event.

Lead trainers: 

Prof. Benjamin Schwessinger (Australian National University)

Dr Alistair McTaggart (Psymbiotika Lab)

Dr Gareth Price / Dr Anna Syme (Galaxy Australia

Presenters:

Dr Mareike Moeller (Australian National University)

Rita Tam (Australian National University)

Zhenyan Luo (Australian National University)

Coordination:

Dr Kelly Scarlett (BioPlatforms Australia)

Dr Mabel Lum (BioPlatforms Australia)

Dr Sophie Mazard (BioPlatforms Australia) 

 

Files and materials included in this record:

Event metadata (PDF): Information about the event including description, learning objectives, prerequisites, etc.

Schedule of program inlcuding links to training materials and resources (PDF)

Slide sets as PDFs (PDF)

Table of links to Galaxy workflows and example histories (PDF)

Copy of Galaxy workflows developed as examples for fungal data analysis (as .ga files)

 

Materials shared elsewhere:

This workshop includes tutorials from the Galaxy Training Network which are linked in the schedule document.
Potato Respiration I
Creators: name: Teixeira, Gustavo
name: Paytosh, Samuel
name: Spear, Rhett
name: Olsen, Nora
Publisher: name: University of Idaho Extension
Year: 2024
Subjects: Agriculture - Small-Acreage Farming
potatoes
crop
Agriculture - Crop Production
Agriculture - On-Farm Testing
Agriculture

description: During potato harvest, respiration becomes a crucial metabolic process. Its effectiveness determines how well a potato survives storage. Learn more about the aerobic respiration process, its physiological consequences, and how to correctly measure respiration in this concise and useful bulletin, the first in the Potato Postharvest series. Usually unavailable in convenient formats (typically scattered in the scientific literature), the compiled information, which includes real-world examples, will help you to maintain healthier potatoes and/or manage more consistent yields.