cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Interpretation of human breathing patterns towards a new augmentative and alternative communication solution
Creators: name: Elsahar, Yasmin
Publisher: name: Loughborough University
Year: 2021
Subjects: classificationCode: 401799
subject: Mechanical engineering not elsewhere classified

description: Augmentative and alternative communication (AAC) encompasses a range of methods that replace or complement speech of individuals with complex communication needs. Predominant AAC methods rely on the interpretation of specific input signals, including purposeful hand gestures, eye-tracking vectors, and brain waves. However, most AAC systems still face limitations in terms of usage flexibility and cost, especially when a user’s speech impairment is compounded with a form of motor disability.To address this shortfall, an alternative AAC solution, based on encoded modulated breathing patterns (MBPs), is presented to support the communication of specific categories of individuals with speech disabilities. This research focuses on the characterisation of human breathing airflow dynamics towards the establishment of a modulated breathing patterns interpretation (MBPI) approach supported by dynamic machine learning.The research project aims to explore practical breathing patterns interpretation as an effective and user adapted AAC solution by utilising the characteristics of continuous modulated breathing patterns (MBPs) to output synthesised machine spoken words (SMSW). The physical mechanics of human breathing airflow are determined to characterise upper breathing airflow and identify the necessary mechanisms for the collection of the intended breathing signals.A dynamic airflow pressure detection system (DAPDS) based upon the principles of breath characterisation is researched to detect MBP signals during the inhalation and/or exhalation phases, producing a set of distinct and recognisable patterns. MBPs are used to interactively encode words and phrases by assigning MBPs to user-selected SMSW, building up a lexicon of words and phrases. The MBPI platform utilises a dynamic time warping (DTW) with k-nearest neighbour (k-NN) supervised machine learning algorithm to recognise user incoming MBPs and output the corresponding SMSW for communication. Approved protocols testing 25 healthy subjects were designed to acquire user- selected MBPs. The results obtained express a mean reliability of 91.97% with increased user familiarity. The interpretation of breathing patterns sets the way for the creation of new breath decoding applications, including self-learning AAC systems that are able to respond to individual user needs.
Composite fermion Hall conductivity and the half-filled Landau level
Creators: name: Kumar, Prashant
name: Raghu, Srinivas
name: Mulligan, Michael
Publisher: name: arXiv
Year: 2018
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We consider the Hall conductivity of composite fermions in the theory of Halperin, Lee, and Read (HLR). We present a fully quantum mechanical numerical calculation that shows, under suitable conditions, the HLR theory exhibits a particle-hole symmetric dc electrical Hall response in the presence of quenched disorder. Remarkably, this response of the HLR theory remains robust even when the disorder range is of the order of the Fermi wavelength. We find that deviations from particle-hole symmetric response can appear in the ac Hall conductivity at frequencies sufficiently large compared to the inverse system size. Our results agree with a recent semi-classical analysis by Wang et al., Phys. Rev. X 7, 031029 (2017) and complement the arguments based on the fully quantum-mechanical model by Kumar et al., Phys. Rev. B 98, 11505 (2018). These results provide further evidence that the HLR theory is compatible with an emergent particle-hole symmetry.
description: 7 pages, 4 figures; v2: New results on the ac Hall conductivity of composite fermions were added. Introduction and discussion sections were rewritten
Dibaryons as axially symmetric skyrmions
Creators: name: Thomas, G. L.
name: Scoccola, N. N.
name: Wirzba, A.
Publisher: name: arXiv
Year: 1993
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Dibaryons configurations are studied in the framework of the bound state soliton model. A generalized axially symmetric ansatz is used to determine the soliton background. We show that once the constraints imposed by the symmetries of the lowest energy torus configuration are satisfied all spurious states are removed from the dibaryon spectrum. In particular, we show that the lowest allowed state in the $S=-2$ channel carries the quantum numbers of the H particle. We find that, within our approximations, this particle is slightly bound in the model. We discuss, however, that vacuum effects neglected in the present calculation are very likely to unbind the H.
description: 24 pages, LaTeX, TAN-FNT-93-12 (it replaces old version which was truncated)
Infinite horizon optimal control of a SIR epidemic under an ICU constraint
Creators: name: Freddi, Lorenzo
name: Goreac, Dan
Publisher: name: arXiv
Year: 2023
Subjects: subject: Optimization and Control (math.OC)
subject: FOS: Mathematics

description: The aim of this paper is to provide a rigorous mathematical analysis of an optimal control problem of a SIR epidemic on an infinite horizon. A state constraint related to intensive care units (ICU) capacity is imposed and the objective functional linearly depends on the state and the control. After preliminary asymptotic and viability analyses, a $Γ$-convergence argument is developed to reduce the problem to a finite horizon allowing to use a state constrained version of Pontryagin's theorem to characterize the structure of the optimal controls. Illustrating examples and numeric simulations are given according to the available data on Covid-19 epidemic in Italy.
title: Visual abstract : assessing the impact of remote work during COVID-19 on clinical and translational scientists and staff in Colorado
title: CCTSI remote work during COVID visual abstract April 9, 2021
titleType: AlternativeTitle
title: Assessing the impact of remote work during COVID-19 on clinical and translational scientists and staff in Colorado
titleType: AlternativeTitle
Creators: name: Gilmartin, H.
name: Connelly, B.
name: Hebbe, A.
name: Battaglia, C.
name: Kwan, B.
Publisher: name: Mountain Scholar
Year: 2021
Subjects: subject: Work -- Physiological aspects
subject: Work environment
subject: COVID-19 (Disease)
subject: Research Report
subject: Coronavirus
subject: Work Engagement
subject: Work Performance

description: Background -- Methods -- Findings -- Implications.
On cross-ratio distortion and Schwarz derivative
Creators: name: Teplinsky, Alexey
Publisher: name: arXiv
Year: 2007
Subjects: subject: Dynamical Systems (math.DS)
subject: General Mathematics (math.GM)
subject: FOS: Mathematics
subject: 37E05, 37E10 (Primary), 26A06 (Secondary)

description: We prove asymptotic estimates for the cross-ratio distortion with respect to a smooth or holomorphic function in terms of its Schwarz derivative.
description: the spelling of the name `Schwarz' corrected
Reduction of a kinetic model for Na+ channel activation, and fast and slow inactivation within a neural or cardiac membrane
Creators: name: Vaccaro, S. R.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Biological Physics (physics.bio-ph)
subject: Subcellular Processes (q-bio.SC)
subject: FOS: Physical sciences
subject: FOS: Biological sciences

description: A fifteen state kinetic model for Na+ channel gating that describes the coupling between three activation sensors, a two-stage fast inactivation process and slow inactivated states, may be reduced to equations for a six state system by application of the method of multiple scales. By expressing the occupation probabilities for closed states and the open state in terms of activation and fast inactivation variables, and assuming that activation has a faster relaxation than inactivation and that the activation sensors are mutually independent, the kinetic equations may be further reduced to rate equations for activation, and coupled fast and slow inactivation that describe spike frequency adaptation, a repetitive bursting oscillation in the neural membrane, and a cardiac action potential with a plateau oscillation. The fast inactivation rate function is, in general, dependent on the activation variable m(t) but may be approximated by a voltage-dependent function, and the rate function for entry into the slow inactivated state is dependent on the fast inactivation variable.
description: 19 pages, 18 figures
title: Survey CCTSI remote work during COVID-19
title: Impact of remote work for CCTSI researchers during coronavirus 2020 version 2
titleType: AlternativeTitle
Creators: name: Gilmartin, Heather
Publisher: name: Mountain Scholar
Year: 2020
Subjects: subject: Work -- Physiological aspects
subject: Work environment
subject: COVID-19 (Disease)
subject: Surveys and Questionnaires
subject: Coronavirus
subject: Work Engagement
subject: Work Performance

description: Study designed to understand how individual CCTSI researchers and staff are conducting remote work during the COVID-19 pandemic.
Few Islands Approximation of Hamiltonian System with divided Phase Space
Creators: name: Bunimovich, Leonid A.
name: Casati, Giulio
name: Prosen, Tomaz
name: Vidmar, Gregor
Publisher: name: arXiv
Year: 2018
Subjects: subject: Chaotic Dynamics (nlin.CD)
subject: FOS: Physical sciences

description: It is well known that typical Hamiltonian systems have divided phase space consisting of regions with regular dynamics on KAM tori and region(s) with chaotic dynamics called chaotic sea(s). This complex structure makes rigorous analysis of such systems virtually impossible and significantly complicates numerical exploration of their dynamical properties. In this paper we outline a new approach for the analysis of Hamiltonian systems with divided phase space. These systems are approximated by a sequence of Hamiltonian systems having an increasing (but finite) number of KAM islands. The islands in the approximating systems are sub-islands of the islands in the initial system with an infinite number of KAM-islands. We apply this approach to two-dimensional billiards and demonstrate that it works. In particular the statistical characteristics of the approximating systems tend to the ones for the whole system when the number of islands in the approximating systems grows. Therefore our approach opens up a new way for numerical and analytical studies of the dynamics of Hamiltonian systems with divided phase space.
description: 8 pages (RevTex), 9 figures; version as accepted by Experimental Mathematics
title: Streamlining the REDCap training and user account creation process
Creators: name: Miller, Amanda
name: Ellert, Swan
name: Carlin, Linda
name: Bondy, Jessica
name: Kahn, Michael G.
Publisher: name: Mountain Scholar
Year: 2016
Subjects: subject: Data Collection
subject: Research Design

description: Summary: A description of the online training creation and implementation and how it is tied to streamlining the account creation process for REDCap.
Perturbation theory in the nonperturbative QCD vacuum
Creators: name: Simonov, Yu. A.
Publisher: name: arXiv
Year: 1993
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Perturbative expansion in the nonperturbative confining QCD background is formulated. The properly renormalized $α_S(R)$ is shown to be finite at large distances, with the string tension playing the role of an infrared regulator. The infra--red renormalons are shown to be absent in the new perturbation series.
description: 38 pages, preprint HD-THEP-93-16
Monocular Semantic Occupancy Grid Mapping with Convolutional Variational Encoder-Decoder Networks
Creators: name: Lu, Chenyang
name: van de Molengraft, Marinus Jacobus Gerardus
name: Dubbelman, Gijs
Publisher: name: arXiv
Year: 2018
Subjects: subject: Robotics (cs.RO)
subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: In this work, we research and evaluate end-to-end learning of monocular semantic-metric occupancy grid mapping from weak binocular ground truth. The network learns to predict four classes, as well as a camera to bird's eye view mapping. At the core, it utilizes a variational encoder-decoder network that encodes the front-view visual information of the driving scene and subsequently decodes it into a 2-D top-view Cartesian coordinate system. The evaluations on Cityscapes show that the end-to-end learning of semantic-metric occupancy grids outperforms the deterministic mapping approach with flat-plane assumption by more than 12% mean IoU. Furthermore, we show that the variational sampling with a relatively small embedding vector brings robustness against vehicle dynamic perturbations, and generalizability for unseen KITTI data. Our network achieves real-time inference rates of approx. 35 Hz for an input image with a resolution of 256x512 pixels and an output map with 64x64 occupancy grid cells using a Titan V GPU.
Speckle photographic in-process measurement of three-dimensional deformations in running manufacturing processes
Creators: name: Tausendfreund, Andreas
name: Stöbener, Dirk
name: Fischer, Andreas
Publisher: name: Society of Photo‑Optical Instrumentation Engineers (SPIE)
Year: 2021
Subjects: subject: Speckle
subject: Manufacturing
subject: Photography
subject: 3D metrology
subject: Correlation function
subject: Image resolution
subject: Materials processing
subject: 600

description: -
Strange metal behavior from incoherent carriers scattered by local moments
Creators: name: Ciuchi, Sergio
name: Fratini, Simone
Publisher: name: arXiv
Year: 2023
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We study metallic transport in an effective model that describes the coupling of electrons to fluctuating magnetic moments with full SU(2) symmetry, exhibiting characteristic behavior of metals at the approach of the Mott transition. We show that scattering by fluctuating local moments causes a fully incoherent regime of electron transport with linear T-dependent resistivities. This strange metal regime is characterized by almost universal, "Planckian" slope and a finite intercept at $T=0$, that we can associate respectively to the fluctuations in orientation and amplitude of the local moments. Our results indicate a route for understanding the microscopic origin of strange metal behavior that is unrelated to quantum criticality and does not rely on the existence of quasiparticles.
description: 5 pages, 3 figures, improved text and figures, supplementary materials added
Spatio-Temporal Electron Propagation Dynamics in Au/Fe/MgO(001) in nonequilibrium: Revealing Single Scattering Events and the Ballistic Limit
Creators: name: Heckschen, Markus
name: Beyazit, Yasin
name: Shomali, Elaheh
name: Kühne, Florian
name: Jayabalan, Jesumony
name: Zhou, Ping
name: Diesing, Detlef
name: Gruner, Markus E.
name: Pentcheva, Rossitza
name: Lorke, Axel
name: Sothmann, Björn
name: Bovensiepen, Uwe
Publisher: name: arXiv
Year: 2023
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Understanding the microscopic spatio-temporal dynamics of nonequilibrium charge carriers in heterosystems promises optimization of process and device design towards desired energy transfer. Hot electron transport is governed by scattering with other electrons, defects, and bosonic excitations. Analysis of the energy dependence of scattering pathways and identification of diffusive, super-diffusive, and ballistic transport regimes are current challenges. We determine in femtosecond time-resolved two-photon photoelectron emission spectroscopy the energy-dependent change of the electron propagation time through epitaxial Au/Fe(001) heteostructures as a function of Au layer thickness for energies of 0.5 to \unit[2.0]{eV} above the Fermi energy. We describe the laser-induced nonequilibrium electron excitation and injection across the Fe/Au interface using real-time time-dependent density functional theory and analyze the electron propagation through the Au layer by microscopic electron transport simulations. We identify ballistic transport of minority electrons at energies with a nascent, optically excited electron population which is determined by the combination of photon energy and the specific electronic structure of the material. At lower energy, super-diffusive transport with 1 to 4 scattering events dominates. The effective electron velocity accelerates from 0.3 to \unit[1]{nm/fs} with an increase in the Au layer thickness from 10 to 100~nm. This phenomenon is explained by electron transport that becomes preferentially aligned with the interface normal for thicker Au layers, which facilitates electron momentum / energy selection by choice of the propagation layer thickness.
Span-program-based quantum algorithm for evaluating formulas
Creators: name: Reichardt, Ben W.
name: Spalek, Robert
Publisher: name: arXiv
Year: 2007
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We give a quantum algorithm for evaluating formulas over an extended gate set, including all two- and three-bit binary gates (e.g., NAND, 3-majority). The algorithm is optimal on read-once formulas for which each gate's inputs are balanced in a certain sense. The main new tool is a correspondence between a classical linear-algebraic model of computation, "span programs," and weighted bipartite graphs. A span program's evaluation corresponds to an eigenvalue-zero eigenvector of the associated graph. A quantum computer can therefore evaluate the span program by applying spectral estimation to the graph. For example, the classical complexity of evaluating the balanced ternary majority formula is unknown, and the natural generalization of randomized alpha-beta pruning is known to be suboptimal. In contrast, our algorithm generalizes the optimal quantum AND-OR formula evaluation algorithm and is optimal for evaluating the balanced ternary majority formula.
description: 42 pages, new appendix on four-bit functions
Electromagnetic Transition Form Factors of Baryon Resonances
Creators: name: Ramalho, G.
name: Peña, M. T.
Publisher: name: arXiv
Year: 2023
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: High Energy Physics - Lattice (hep-lat)
subject: Nuclear Experiment (nucl-ex)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Recent experimental and theoretical advancements have led to significant progress in our understanding of the electromagnetic structure of nucleons ($N$), nucleon excitations ($N^\ast$), and other baryons. These breakthroughs have been made possible by the capabilities of modern facilities, enabling the induction of photo- and electro-excitation of nucleon resonances. Recent experimental advances have sparked notable developments in theoretical approaches. New theoretical methods have been tested and proven to be robust, marking the beginning of a new era in our understanding on baryons. We present a comprehensive review of progress in experimental data on $γ^\ast N \to N^\ast$ reactions. Additionally, we discuss various analyses and theoretical results. Some of these methods have matured in their predictive power, offering new perspectives on exotic hadrons with multiquark components. We place special emphasis on both the low-$Q^2$ and large-$Q^2$ regions to reinforce crucial physical constraints on observables that hold in these limits. Furthermore, we illustrate that the combination of lattice QCD with chiral effective field theory and quark models, respectively, proves beneficial in interpreting data and applying constraints within those different regimes. As a practical contribution and for future reference, we review the formulas for helicity amplitudes, multipole form factors and the relations between these two sets of functions for transitions to resonances with general spin $J \geq \frac{1}{2}$. These formulas are ubiquitous and play a pivotal role in experimental and theoretical studies on baryon structure. Notably, the multipole transition form factors for $J \ge \frac{3}{2}$ resonances serve as valuable tools to test perturbative QCD results in the large-$Q^2$ region, thanks to the correlations between electric and magnetic transition form factors.
description: Published in Prog.Part.Nucl.Phys. Version with larger fonts. 124 pages, 41 figures, 6 tables. Small corrections in the text. Updated bibliography
Automated identification of coronal holes from synoptic EUV maps
Creators: name: Hamada, Amr
name: Asikainen, Timo
name: Virtanen, Ilpo
name: Mursula, Kalevi
Publisher: name: arXiv
Year: 2017
Subjects: subject: Space Physics (physics.space-ph)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Coronal holes (CH) are regions of open magnetic field lines in the solar corona and the source of fast solar wind. Understanding the evolution of coronal holes is critical for solar magnetism as well as for accurate space weather forecasts. We study here the extreme ultraviolet (EUV) synoptic maps at three wavelengths (195A/193A, 171A and 304A) measured by Solar and Heliospheric Observatory/Extreme Ultraviolet Imaging Telescope (SOHO/EIT) and Solar Dynamics Observatory/Atmospheric Imaging Assembly (SDO/AIA) instruments. The two datasets are first homogenized by scaling the SDO/AIA data to the SOHO/EIT level by means of histogram equalization. We then develop a novel automated method to identify CHs from these homogenized maps by determining the intensity threshold of CH regions separately for each synoptic map. This is done by identifying the best location and size of an image segment, which optimally contains portions of coronal holes and the surrounding quiet Sun allowing us to detect the momentary intensity threshold. Our method is thus able to adjust itself to the changing scale size of coronal holes and to temporally varying intensities. To make full use of the information in the three wavelengths we construct, a composite CH distribution, which is more robust than distributions based on one wavelength. Using the composite CH dataset we discuss the temporal evolution of CHs during the solar cycles 23 and 24.
title: Improving investigator adherence to best practice guidelines in electronic data capture using an automated tool (CheckMate)
Creators: name: Ellert, Swan
name: Carlin, Linda
name: Kaya, Umit
name: Bondy, Jessica
name: Kahn, Michael G.
Publisher: name: Mountain Scholar
Year: 2017
Subjects: subject: Data Collection
subject: Research Design

description: Poster presentation at the 2011 AMIA Summit on Clinical Research Informatics in San Francisco, California. Supported by NIH/NCRR Colorado CTSI Grant number 3UL1RR025780-02S3.
Improved parameters for the transiting planet HD 17156b: a high-density giant planet with a very eccentric orbit
Creators: name: Gillon, M.
name: Triaud, A. H. M. J.
name: Mayor, M.
name: Queloz, D.
name: Udry, S.
name: North, P.
Publisher: name: arXiv
Year: 2007
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We report high-precision transit photometry for the recently detected planet HD 17156b. Using these new data with previously published transit photometry and radial velocity measurements, we perform a combined analysis based on a Markov Chain Monte Carlo approach. The resulting mass M_p = 3.09 (+0.22-0.17) M_Jup and radius R_p = 1.23 (+0.17-0.20) R_Jup for the planet places it at the outer edge of the density distribution of known transiting planets with rho_p = 1.66 (+1.37-0.60) rho_Jup. The obtained transit ephemeris is T_tr = 2454438.48271 (+0.00077-0.00057) + N x 21.21747 (+0.00070-0.00067) BJD. The derived plausible tidal circularization time scales for HD 17156b are larger than the age of the host star. The measured high orbital eccentricity e = 0.6719 (+0.0052-0.0063) can thus not be interpreted as the clear sign of the presence of another body in the system.
description: 6 pages, 3 figures, 1 table. Accepted for publication in A&A
Additional file 8: of Estimates and predictors of health care costs of esophageal adenocarcinoma: a population-based cohort study
Creators: name: Hla-Hla Thein
name: Jembere, Nathaniel
name: Kednapa Thavorn
name: Chan, Kelvin
name: Coyte, Peter
name: Oliveira, Claire De
name: Hur, Chin
name: Earle, Craig
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Science Policy

description: Table S5. Mean net costs* of care due to esophageal adenocarcinoma according to service category and phase of care, 2003–2011: Sensitivity analysis. Table S6. Overall and phase of care net cost of health care resources by stage at diagnosis and treatment type for the esophageal adenocarcinoma cohort, 2003–2011: Sensitivity analysis. Table S7. Predictors of total net costs of care in individuals with a diagnosis of esophageal adenocarcinoma according to phase of care, 2003–2011: Multivariate generalized estimation equations with a log link function and gamma distribution – Sensitivity analysis. (DOCX 37 kb)
Data-driven dynamical coarse-graining for condensed matter systems
Creators: name: del Razo, Mauricio J.
name: Crommelin, Daan
name: Bolhuis, Peter G.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Computational Physics (physics.comp-ph)
subject: Chemical Physics (physics.chem-ph)
subject: Data Analysis, Statistics and Probability (physics.data-an)
subject: FOS: Physical sciences
subject: J.2; G.1.10; I.6.0
subject: 82D03, 82-XX, 70Lxx, 37Mxx, 65Pxx, 68T07

description: Simulations of condensed matter systems often focus on the dynamics of a few distinguished components but require integrating the dynamics of the full system. A prime example is a molecular dynamics simulation of a (macro)molecule in solution, where both the molecules(s) and the solvent dynamics needs to be integrated. This renders the simulations computationally costly and often unfeasible for physically or biologically relevant time scales. Standard coarse graining approaches are capable of reproducing equilibrium distributions and structural features but do not properly include the dynamics. In this work, we develop a stochastic data-driven coarse-graining method inspired by the Mori-Zwanzig formalism. This formalism shows that macroscopic systems with a large number of degrees of freedom can in principle be well described by a small number of relevant variables plus additional noise and memory terms. Our coarse-graining method consists of numerical integrators for the distinguished components of the system, where the noise and interaction terms with other system components are substituted by a random variable sampled from a data-driven model. Applying our methodology on three different systems -- a distinguished particle under a harmonic potential and under a bistable potential; and a dimer with two metastable configurations -- we show that the resulting coarse-grained models are not only capable of reproducing the correct equilibrium distributions but also the dynamic behavior due to temporal correlations and memory effects. Our coarse-graining method requires data from full-scale simulations to be parametrized, and can in principle be extended to different types of models beyond Langevin dynamics.
Additional file 6: of Reduced phloem uptake of Myzus persicae on an aphid resistant pepper accession
Creators: name: Mengjing Sun
name: Voorrips, Roeland
name: Steenhuis-Broers, Greet
name: Westende, Wendy VanâT
name: Vosman, Ben
Publisher: name: figshare
Year: 2018
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Table S4. Primer sequences used in real-time PCR. (DOCX 14Â kb)
title: Promoting use of standard data elements: automating IRB continuing review enrollment count/summary reporting
Creators: name: Ellert, Swan
name: Carlin, Linda
name: Bondy, Jessica
name: Kahn, Michael G.
Publisher: name: Mountain Scholar
Year: 2016
Subjects: subject: Data Collection
subject: Research Design

description: Presented at the annual REDCap User Group Conference that was held September 2014, Park City, Utah.
description: To promote the use of data standards, specifically in the domain of subject demographics, the CCTSI REDCap team, in cooperation with our local IRB, has developed a plugin to automate reporting of data required for annual continuing review. The tool relies on standard data elements defined in our "IRB Reporting Form." Supported in part by Colorado CTSA Grant UL1 TR001082 from NCATS/NIH.
The groomed and ungroomed jet mass distribution for inclusive jet production at the LHC
Creators: name: Kang, Zhong-Bo
name: Lee, Kyle
name: Liu, Xiaohui
name: Ringer, Felix
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: Nuclear Experiment (nucl-ex)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We study jet mass distributions measured in the single inclusive jet production in proton-proton collisions $pp\to \text{jet}+X$ at the LHC. We consider both standard ungroomed jets as well as soft drop groomed jets. Within the Soft Collinear Effective Theory (SCET), we establish QCD factorization theorems for both cases and we study their relation. The developed framework allows for the joint resummation of several classes of logarithmic corrections to all orders in the strong coupling constant. For the ungroomed case, we resum logarithms in the jet radius parameter and in the small jet mass. For the groomed case, we resum in addition the logarithms in the soft threshold parameter $z_{\text{cut}}$ which is introduced by the soft drop grooming algorithm. In this way, we are able to reliably determine the absolute normalization of the groomed jet mass distribution in proton-proton collisions. All logarithmic corrections are resummed to the next-to-leading logarithmic accuracy. We present numerical results and compare with the available data from the LHC. For both the groomed and ungroomed jet mass distributions we find very good agreement after including non-perturbative corrections.
description: 38 pages, 9 figures, published version
title: Implementation of a rapid assessment infrastructure within a hospital's COVID-19 incident command system
Creators: name: Sills, Marion Ruth
name: Ogawa, Kaleigh
name: Bajaj, Lalit
name: Brumbaugh, David
name: Cotter, Jillian
name: Givens, Patricia
name: Lockwood, Justin
name: Pemberton, Katherine
name: Pham, Andrew
name: Prinzi, Andrea
name: Rao, Suchitra
name: Reiter, Pamela D.
name: Santucci, Kourtney
name: Stevens, Christina G.
name: Swanson, Angela
name: Taylor, Walter M.
name: White, Carl W.
name: Grayck, Eva Nozik
Publisher: name: Mountain Scholar
Year: 2020
Subjects: subject: COVID-19 (Disease)
subject: Epidemics
subject: Evidence-based medicine
subject: Evidence-Based Medicine Advisory Group
subject: Pandemics
subject: Epidemics
subject: Evidence-Based Practice
subject: Evidence-Based Medicine
subject: Advisory Committees

description: Research poster: "The hospital’s incident command identified a need for rapid evidence assessment to address questions arising within the hospital and the region’s pediatric care system. SAC leadership developed a process for prioritypriority-setting, rapid evidence assessment and reporting to the hospital’s incident command".
description: Introduction -- Objectives -- Methods -- Results -- Conclusion.
Node-weighted Graph Convolutional Network for Depression Detection in Transcribed Clinical Interviews
Creators: name: Burdisso, Sergio
name: Villatoro-Tello, Esaú
name: Madikeri, Srikanth
name: Motlicek, Petr
Publisher: name: arXiv
Year: 2023
Subjects: subject: Computation and Language (cs.CL)
subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: We propose a simple approach for weighting self-connecting edges in a Graph Convolutional Network (GCN) and show its impact on depression detection from transcribed clinical interviews. To this end, we use a GCN for modeling non-consecutive and long-distance semantics to classify the transcriptions into depressed or control subjects. The proposed method aims to mitigate the limiting assumptions of locality and the equal importance of self-connections vs. edges to neighboring nodes in GCNs, while preserving attractive features such as low computational cost, data agnostic, and interpretability capabilities. We perform an exhaustive evaluation in two benchmark datasets. Results show that our approach consistently outperforms the vanilla GCN model as well as previously reported results, achieving an F1=0.84 on both datasets. Finally, a qualitative analysis illustrates the interpretability capabilities of the proposed approach and its alignment with previous findings in psychology.
description: Paper Accepted to Interspeech 2023
title: CU record linkage
title: University of Colorado record linkage
titleType: AlternativeTitle
title: CURL
titleType: AlternativeTitle
Creators: name: (:Unkn) Unknown
Publisher: name: Mountain Scholar
Year: 2021
Subjects: subject: Medical record linkage
subject: Medical Record Linkage

description: Video explaining CU Record Linkage (CURL) with animated images.
description: CCTSI CU Record Linkage collection of materials.
Additional file 4: of Engineering Geobacillus thermodenitrificans to introduce cellulolytic activity; expression of native and heterologous cellulase genes
Creators: name: Daas, Martinus
name: Nijsse, Bart
name: Weijer, Antonius Van De
name: Groenendaal, Bart
name: Janssen, Fons
name: Oost, John Van Der
name: Kranenburg, Richard Van
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Biotechnology
subject: Developmental Biology
subject: Marine Biology

description: Figure S2. Congo red assays of cellulase expressing G. thermodenitrificans cultures. Congo red assays of G. thermodenitrificans cultures grown on LB2 medium with 1% carboxymethylcellulose. Each culture produces a different cellulase. Ă : empty plasmid (pNW33n) control; CelA: GH5 endoglucanase CelA (Geobacillus 70PC53); CelK: GH9 exoglucanase (C. thermocellum); GE40wt: GH5 endoglucanase (Geobacillus metagenome derived) containing its native signal peptide; GE40: GH5 endoglucanase (Geobacillus metagenome derived). (PDF 48 kb)
Additional file 1: of Assessing the policy and practice impact of an international policy initiative: the State of the Worldâ s Midwifery 2014
Creators: name: Oliver, Kathryn
name: Parolin, Zachary
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Topic Guide. Questions and prompts used by interviewers to conduct semi-structured interviews with participants for the SoWMy study. (DOCX 14 kb)
Crossref Metadata and digital object identifier (DOI): Elevating the Impact and Visibility of Scientific Journals
Creators: name: M. Abdulateef, Dr. Salwan
Publisher: name: Zenodo
Year: 2024

description: Crossref Metadata and Digital Object Identifier (DOI): Elevating the Impact and Visibility of Scientific Journals" describes how Crossref's metadata services and DOI system enhance the discoverability and accessibility of scholarly publications. By ensuring consistent and comprehensive metadata and assigning DOIs, Crossref enables seamless linking and citation tracking across the digital landscape, significantly boosting the visibility and impact of scientific journals. This framework facilitates scholarly communication, ensuring that research is easily navigable, verifiable, and integrated into the global body of knowledge
Detecting Sleptons at Hadron Colliders and Supercolliders
Creators: name: Baer, H.
name: Chen, C.
name: Paige, F.
name: Tata, X.
Publisher: name: arXiv
Year: 1993
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We study the prospects for detecting the sleptons of the Minimal Supersymmetric Standard Model at hadron colliders and supercolliders. We use ISAJET 7.03 to simulate charged slepton and sneutrino pair production, incorporating slepton and sneutrino cascade decays into our analysis. We find that even with an accumulation of $\sim 1$fb$^{-1}$ of integrated luminosity, it will be very difficult to detect sleptons beyond the reach of LEP at the Fermilab Tevatron $p\bar{p}$ collider, due to a large background from $W$ pair production. At LHC, sleptons of mass up to 300 GeV ought to be detectable via dilepton signal as long as it is possible to veto central jets with $p_T \geq 25$ GeV with high efficiency.
description: 14 pages (REVTEX), 4 uuencoded figures appended, FSU-HEP-931104, SSCL-Preprint-531, UH-511-777-93
EpiLexO - User Manual
Creators: name: Bandini, Michela
name: Quochi, Valeria
Publisher: name: Zenodo
Year: 2024
Subjects: Digital Epigraphy
Restsprachen
eLexicography
User Manual
Historical Linguistics
Text-Lexicon linking

description: EpiLexO is a specialized web platform designed for the creation and editing of lexical resources, associated evidence, references, and relevant bibliography of fragmentary languages of ancient Italy such as Oscan, Faliscan, and Venetic in the context of the project: Languages and Cultures of Ancient Italy. Historical Linguistics and Digital Models (PRIN 2017XJLE8J). The platform, a single-page web application, includes several sections, each of which provides functionality for generating or editing lexical resources and establishing connections and links between their elements and different sets of internal and external resources. This User Manual aims to help users understand the interface by illustrating its functions with step-by-step instructions, examples, and troubleshooting guidance. Its target audience includes historical linguists, digital humanists and epigraphists whose research is based on linguistics and philology.

EpiLexO is supported by CLARIN-IT.
Nonrelativistic spatiotemporal quantum reference frames
Creators: name: Suleymanov, Michael
name: Paiva, Ismael L.
name: Cohen, Eliahu
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Quantum reference frames have attracted renewed interest recently, as their exploration is relevant and instructive in many areas of quantum theory. Among the different types, position and time reference frames have captivated special attention. Here, we introduce and analyze a nonrelativistic framework in which each system contains an internal clock, in addition to its external (spatial) degree of freedom and, hence, can be used as a spatiotemporal quantum reference frame. We present expressions for expectation values and variances of relevant observables in different perspectives, as well as relations between these quantities in different perspectives in scenarios with no interactions. In particular, we show that even in these simple scenarios, the relative uncertainty between clocks affects the relative spatial spread of the systems.
description: Typos corrected. Author's accepted version
title: iPPRL value proposition design customer discovery phone interviews : leadership and regulatory
title: Leadership and regulatory
titleType: AlternativeTitle
Creators: name: (:Unkn) Unknown
Publisher: name: Mountain Scholar
Year: 2021
Subjects: subject: Medical record linkage
subject: Questionnaires
subject: Medical Record Linkage
subject: Surveys and Questionnaires

description: CCTSI CU Record Linkage collection of materials.
description: Eligibility -- Introduction -- Customer jobs -- Customer pains -- Customer gains -- Closing.
Flavorful Supersymmetry
Creators: name: Nomura, Yasunori
name: Papucci, Michele
name: Stolarski, Daniel
Publisher: name: arXiv
Year: 2007
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Weak scale supersymmetry provides elegant solutions to many of the problems of the standard model, but it also generically gives rise to excessive flavor and CP violation. We show that if the mechanism that suppresses the Yukawa couplings also suppresses flavor changing interactions in the supersymmetry breaking parameters, essentially all the low energy flavor and CP constraints can be satisfied. The standard assumption of flavor universality in the supersymmetry breaking sector is not necessary. We study signatures of this framework at the LHC. The mass splitting among different generations of squarks and sleptons can be much larger than in conventional scenarios, and even the mass ordering can be changed. We find that there is a plausible scenario in which the NLSP is a long-lived right-handed selectron or smuon decaying into the LSP gravitino. This leads to the spectacular signature of monochromatic electrons or muons in a stopper detector, providing strong evidence for the framework.
description: 20 pages; typos corrected, comments added, to appear in PRD
Additional file 5: of Reduced phloem uptake of Myzus persicae on an aphid resistant pepper accession
Creators: name: Mengjing Sun
name: Voorrips, Roeland
name: Steenhuis-Broers, Greet
name: Westende, Wendy VanâT
name: Vosman, Ben
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Figure S2. Phylogenetic analysis of pepper (Ca), Arabidopsis (At) and grapevine (Vv) CalS proteins, using the MEGA [100] neighbour-joining algorithm. (PDF 10Â kb)
Excitation of Wannier-Stark states in a chain of coupled optical resonators with linear gain and nonlinear losses
Creators: name: Verbitskiy, A.
name: Yulin, A.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Optics (physics.optics)
subject: Pattern Formation and Solitons (nlin.PS)
subject: FOS: Physical sciences

description: In this paper we theoretically study the nonlinear dynamics of Wannier-Stark states in the dissipative system consisting of interacting optical resonators, whose resonant frequencies depend linearly on their number. It is shown that the negative losses in some resonators can switch the system into a lasing regime with Wannier-Stark states serving as working modes. It is shown by extensive numerical simulations that there may be single-frequency stationary regimes as well as multi-frequency regimes. In the latter case Bloch oscillations can appear in the system. The possibility of selective excitation of Wannier-Stark states by the appropriate choice of the dissipation profile is investigated. A simple perturbation theory describing the quasi-linear regimes is developed and compared against the numerical results.
Amplitude bounds for biochemical oscillators
Creators: name: Jörg, David J.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Adaptation and Self-Organizing Systems (nlin.AO)
subject: FOS: Physical sciences

description: We present a practical method to obtain bounds for the oscillation minima and maxima of large classes of biochemical oscillator models that generate oscillations through a negative feedback. These bounds depend on the feedback nonlinearity and are independent of explicit or effective feedback delays. For specific systems, we obtain explicit analytical expressions for the bounds and demonstrate their effectiveness in comparison with numerical simulations.
description: 6 pages, 4 figures
Functional control of network dynamics using designed Laplacian spectra
Creators: name: Forrow, Aden
name: Woodhouse, Francis G.
name: Dunkel, Jörn
Publisher: name: arXiv
Year: 2018
Subjects: subject: Physics and Society (physics.soc-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Adaptation and Self-Organizing Systems (nlin.AO)
subject: FOS: Physical sciences

description: Complex real-world phenomena across a wide range of scales, from aviation and internet traffic to signal propagation in electronic and gene regulatory circuits, can be efficiently described through dynamic network models. In many such systems, the spectrum of the underlying graph Laplacian plays a key role in controlling the matter or information flow. Spectral graph theory has traditionally prioritized unweighted networks. Here, we introduce a complementary framework, providing a mathematically rigorous weighted graph construction that exactly realizes any desired spectrum. We illustrate the broad applicability of this approach by showing how designer spectra can be used to control the dynamics of various archetypal physical systems. Specifically, we demonstrate that a strategically placed gap induces chimera states in Kuramoto-type oscillator networks, completely suppresses pattern formation in a generic Swift-Hohenberg model, and leads to persistent localization in a discrete Gross-Pitaevskii quantum network. Our approach can be generalized to design continuous band gaps through periodic extensions of finite networks.
description: 9 pages, 5 figures
title: Health data linkage workshop materials
Creators: name: (:Unkn) Unknown
Publisher: name: Mountain Scholar
Year: 2021
Subjects: subject: Medical record linkage
subject: Workshops
subject: Medical Record Linkage
subject: Education

description: From the Health Data Linkage Workshop: Open the Black Box of Linking Electronic Health Data for Research.
description: CCTSI CU Record Linkage collection of materials.
description: Agenda -- Speakers -- Survey of afternoon session -- Survey of morning session -- Survey of workshop.
FFT Multichannel Interpolation and Application to Image Super-resolution
Creators: name: Cheng, Dong
name: Kou, Kit Ian
Publisher: name: arXiv
Year: 2018
Subjects: subject: Information Theory (cs.IT)
subject: Numerical Analysis (math.NA)
subject: FOS: Computer and information sciences
subject: FOS: Mathematics
subject: 42A15, 94A12, 65T50

description: This paper presents an innovative set of tools to support a methodology for the multichannel interpolation (MCI) of a discrete signal. It is shown that a bandlimited signal $f$ can be exactly reconstructed from finite samples of $g_k$ ($1\leq k\leq M$) which are the responses of $M$ linear systems with input $f$. The proposed interpolation can also be applied to approximate non-bandlimited signals. Quantitative error is analyzed to ensure its effectiveness in approximating non-bandlimited signals and its Hilbert transform. Based on the FFT technique, a fast algorithm which brings high computational efficiency and reliability for MCI is presented. The standout performance of MCI is illustrated by several simulations. Additionally, the proposed interpolation is applied to the single image super-resolution (SISR). Its superior performance in accuracy and speed of SISR is demonstrated by the experimental studies. Our results are compared qualitatively and quantitatively with the state-of-the-art methods in image upsampling and reconstruction by using the standard measurement criteria.
description: 29 pages, 5 figures, 5 tables