cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Regulation of the Rad1 Checkpoint Complex in Breast Cancer
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: Cells are constantly exposed to DNA damaging agents, and if a cell does not properly respond to this threat it runs the risk of having cancer-causing mutations incorporated into its DNA. The responsibility of sensing and responding to DNA damage falls upon a group of proteins, called checkpoint proteins, that activate repair proteins and slow cell growth until the damage is repaired. Failure of these DNA surveillance mechanisms is found to correlate with a higher incidence of cancer. For example, mutations in the checkpoint proteins ATM (mutated in the human genetic disorder ataxia-telangiectasia) and BRCA1 have both been found to be inherited genetic factors that contribute to familial breast cancer. The reason for this is that loss of "policing" of DNA in these patients causes chromosome instability at the cellular level, which contributes to the complex genetic abnormalities that characterize cancers seen in the clinical stages.

 The aim of this project is to study how two DNA damage response checkpoint proteins, ATR and Rad1, interact to initiate the cellular processes necessary to repair DNA damage. We have evidence that ATR regulates Rad1, by attaching small molecules, called phosphates, to specific sites on the protein. My specific goal is to determine what the exact sites of modification are on Rad1, and to test this by altering the protein sequence to confirm their existence. Finally, we will test the mutant forms of Rad1 for their ability to support the cell's responses to DNA damage. The initial phases of this project will be performed in Xenopus (frog) egg extracts, and the final phase of testing the Rad1 mutants will be performed in breast cancer cells. The use of both a Xenopus in vitro cell cycle model system and breast tissue cell lines allows me to exploit the advantages of each system to advance this research more rapidly.

 In conclusion, a better understanding of DNA damage checkpoint processes and how they are defective in cancer will provide new insights into tumor initiation and progression. Understanding these proteins and their interactions may provide new opportunities to arrest and reverse the disease, particularly in ways that might not impact healthy tissue.
Shortfall of Domestic Resources to Eradicate Extreme Poverty by 2030Paper and code
Creators: name: Fabre, Adrien
Publisher: name: figshare
Year: 2025
Subjects: classificationCode: 380119
subject: Welfare economics

description: Article and source code of "Shortfall of Domestic Resources to Eradicate Extreme Poverty by 2030", by Adrien Fabre. To reproduce the article, run the following files in turn: 0_Rprofile.R, 1_preparation.R, 2_paper.R.
Lepidosaphes ulmi
Creators: name: Evans, Erin C. Powell Mark Zenoble Douglass R. Miller Benjamin B. Normark Gregory A.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Diaspididae
Lepidosaphes
Lepidosaphes ulmi

description: Lepidosaphes ulmi (Linnaeus, 1758) (Fig. 13)
Oystershell scale
Hosts in FSCA. Lauraceae: Camphora officinarum Boerh. ex Fabr. (1); Moraceae: Ficus carica L. (3); Paeoniaceae: Paeonia lactiflora Pall. (1)*; Oleaceae: Fraxinus sp. (1), Syringa sp. (1); Rosaceae (1): Malus domestica (Suckow) Borkh. (1), Prunus persica (L.) Batsch (1), Pyrus communis L. (1), Rosa spinosissima L. (1)*; Salicaceae: Populus tremuloides Michx. (1), Salix babylonica L. (1); Salix sp. (1); Sapindaceae: Acer negundo L. (1).
Notes. Despite being one of the most ubiquitous species of Lepidosaphes in the United States, and across the world, L. ulmi has apparently not been collected in the Florida landscape since 1921 and more recent records of the species are all from interceptions of propagative material (Dekle 1965; FDACS-DPI database). When it was collected, it was apparently restricted to the northern panhandle in Baker and Duval counties (Dekle 1965). For a comparison of L. ulmi with L. pinnaeformis see the “Notes” section of the latter.
description: Published as part of Evans, Erin C. Powell Mark Zenoble Douglass R. Miller Benjamin B. Normark Gregory A., 2024, A new invasive Lepidosaphes armored scale (Hemiptera: Coccomorpha: Diaspididae) for Florida: first records, natural enemies, and an identification key, pp. 1-24 in Insecta Mundi 2024 (73) on page 19, DOI: 10.5281/zenodo.14662496
LPC as a Potential Tumor Marker for Recurrent Breast Cancer
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: There are no current reliable blood tests to detect the recurrence of breast cancer, the most common cancer to affect American women. Although two such tests are commercially available, they are not accurate enough in detecting breast cancer to be useful. Early discovery of recurrent disease may allow a woman to be treated at a time when her tumor is small, increasing the chance of a response to treatment and minimizing side effects of the tumor. A reliable blood test may also be useful eventually for the initial detection of breast cancer.

 We propose a new, innovative blood test to detect breast cancer by the measurement of a fat or lipid called lysophosphatidlycholine or LPC. We hypothesize that LPC levels measured from a blood sample will be able to distinguish women who have active breast cancer from those who do not, to predict recurrence of breast cancer, and to change in metastatic breast cancer with response to treatment.

 Blood samples will be obtained in clinic from women diagnosed with breast cancer. Different groups of women with breast cancer will be studied including: women recently diagnosed with early breast cancer receiving chemotherapy or hormone therapy after their surgery; women diagnosed with breast cancer in the past being seen for routine follow up by their doctors; and women with recurrent metastatic disease receiving active treatment. Samples will also be obtained from completely, healthy age-matched women. LPC levels will be measured and compared among the study groups. Some groups will give a one-time blood sample while others may be asked to give a blood sample every 3 months for 18 months.

 LPC belongs to a family of lipid compounds which play many different roles in the way our cells function. No role for LPC in breast cancer is known although early and highly speculative reports show that LPC levels are elevated in the blood of women with newly diagnosed breast cancer compared to healthy women. LPC levels may be a potential new method to detect breast cancer by a simple blood test. While there are no current routinely recommended tests to find recurrent breast cancer, survivors of breast cancer may benefit from a low-risk, reliable blood test.
Molecular Study of BAG Domains: A New Motif in Breast Cancer
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: Breast cancer cells can live and multiply in situations where normal cells would not. This is because cancer cells loose, mutate or counteract their regulatory pathways that control cell division and programmed cell death (apoptosis). Changes in apoptosis are central to tumor progression and to resistance of tumors to clinical treatment. Our interest is in the molecular structure and function of anti-apoptotic proteins from the BAG family. The founding member of this family, BAG1, is present at elevated levels in many breast cancers, promotes tumor growth and metastatic spread, and renders tumors resistant to anti-cancer drugs such as tamoxifen.

 BAG proteins share a conserved protein interaction region, called the "BAG" domain, which binds to Hsp70/Hsc70 molecular chaperones and modulates their activity. When BAG1 without the BAG domain is introduced into breast cancer cells, it reduces their metastatic potential and slows growth of the primary tumor. It is likely that the effect of BAG1 on tumor growth and metastasis is associated with its effect on Hsp70/Hc70 proteins. We will determine the structure of BAG domain from several members of the BAG family using nuclear magnetic resonance (NMR) spectroscopy and computational methods. We will also investigate the interactions of BAG domain with Hsp70/Hc70 and other proteins, using NMR. Atomic models of BAG domains alone and in complex with Hsp70/Hc70 and other molecules will provide a framework to understand the function of BAG proteins.

 BAG proteins represent a new regulatory pathway in breast cancer. Our structural studies will provide context for functional investigations and enable us to understand the role of BAG proteins in breast cancer at the molecular level. BAG proteins may become a target for novel therapeutic strategies, and the availability of a molecular model of the BAG domain will streamline the drug development process.
Purple and Gold
Creators: name: No Name Supplied
Publisher: name: No Publisher Supplied
Year: 1919

description: Newsletter published by the students of South Amboy High School in December 1919.  It contains: an editorial on the Chamber of Commerce, articles about students, student groups, faculty, and alumni, an article about the planned construction of an "Intra-Coastal Ship Canal" in South Amboy, jokes and limericks, and ads from local businesses.
Profiling Serine Protease Activities in Breast Cancer
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: The spread of breast cancer cells in the body occurs by a variety of processes. The most localized phases of tumor spread appear to be governed by protein-digesting proteases that are secreted by cancer cells and create a path by which the cells can move through their surrounding extracellular matrix. However, the actual functions played by individual proteases in breast cancer motility and invasiveness remain elusive. While given serine proteases and their endogenous inhibitors clearly show altered expression patterns during breast tumorigenesis, the overall functional outcome of such changes remain unclear. The reason for this is simple. Protein analysis is usually based on measuring quantity and not functional activity. Indeed, when data relating serine proteases and their endogenous inhibitors to breast cancer are evaluated, seemingly paradoxical trends emerge. For example, while the advancement of breast carcinomas is often linked to a lower amount of some protease inhibitors (e.g., maspin and MEPI), the enhanced expression of other serine protease inhibitors (e.g. PAI-1) increases with late stages of breast tumorigenesis. Likewise, some serine proteases increase, while other decrease, as breast carcinomas become more aggressive. The resolution of this paradox requires the ability to measure protease activities in a complex mixture of both proteases and their endogenous inhibitors. Simple static measures of protease and inhibitor quantity are insufficient to explain the dynamic nature of their interactions that occurs in the breast tumor environment. 
 
 
 
 
 
 
 
 To better understand how serine protease activities impact breast cancer, we will utilize a novel chemical strategy developed in our laboratory termed Activity-Based Protein Profiling (ABPP). This technique allows us to simultaneously monitor the catalytic activities of numerous serine proteases from whole cell, tissue, and fluid samples. Using the CBCRP funding, we will use ABPP to analyze both estrogen receptor (ER) positive and negative human breast cancer cell lines. In breast carcinomas, a strong inverse relationship exists between ER expression and the resulting cellular metastatic properties. Our goal is to take the observations on cell invasiveness and ER status to a specific understanding of serine protease activity. Using ABPP, we will not only detect the serine protease activities found in human breast cancer cells, but also isolate and characterize these enzymes at the molecular level.
 
 
 
 
 
 
 
 We anticipate that these studies will identify functional changes in key serine proteases involved in promoting or retarding breast tumorigenesis. These enzymes should in turn serve as both markers for breast cancer progression and targets for pharmaceutical efforts aimed at treating this disease.
Garrison, W[illia]m Lloyd, letter, Roxbury, [Mass.], April &, 18&2, to William Still.
Creators: name: Garrison, William Lloyd
Publisher: name: No Publisher Supplied
Year: 1872

description: William Lloyd Garrison thanks William Still for the gift of Still's book on the Underground Railroad; comments on the volume’s presentation and contents, including the perils encountered by escaping slaves and the impact of the Fugitive Slave Law; and expresses the hope that the book will be sold widely, both to recoup the expense of preparing it and “for the enlightenment of the rising generation as to the inherent cruelty of the defunct slave system.”
North Atlantic right whale sighting survey (NARWSS) and right whale sighting advisory system (RWSAS) 2011 results summary
Creators: name: No Name Supplied
Publisher: name: No Publisher Supplied
Year: 2012

description: The North Atlantic Right Whale Sighting Survey (NARWSS), a NOAA Fisheries program, locates and records the seasonal distribution of North Atlantic right whales (Eubalaena glacialis) off the northeastern coast of the United States. This report is based on data collected during NARWSS flights conducted in 2011. The Right Whale Sighting Advisory System (RWSAS) supports speed restriction regulations for all vessels at least 65 feet to reduce the threat of ship collisions with right whales. RWSAS collected sighting reports from various sources, most commonly aerial surveys in 2011.
Ceratophyllus (Ceratophyllus) altus Tipton & Mendez 1966
Creators: name: Lareschi, Marcela
name: Sanchez, Juliana
name: Autino, Analía
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Siphonaptera
Ceratophyllidae
Ceratophyllus
Ceratophyllus altus

description: Ceratophyllus (Ceratophyllus) altus Tipton & Mendez, 1966
NMNH. Panamá—Chiriquí: about five miles beyond Cerro Punta on the Boquete Trail. Aves—Strigiformes— Strigidae— Glaucidium jardinii. Chile; Mexico; Panamá; Argentina—Río Negro: El Bolsón. Aves—Piciformes— Colaptes pitius.
description: Published as part of Lareschi, Marcela, Sanchez, Juliana & Autino, Analía, 2016, A review of the fleas (Insecta: Siphonaptera) from Argentina, pp. 239-258 in Zootaxa 4103 (3) on page 240, DOI: 10.11646/zootaxa.4103.3.3, http://zenodo.org/record/262230
Stock assessment of summer flounder for 1999
Creators: name: No Name Supplied
Publisher: name: No Publisher Supplied
Year: 1999

description: This assessment of the summer flounder (Paralichthys dentatus) stock along the Atlantic coast from Maine to North Carolina is an update through 1998 of commercial and recreational fishery catch data, research survey indices of abundance, and the analyses that use those data. The assessment was peer reviewed and accepted by the Mid-Atlantic Fisheries Management Council Scientific and Statistical Committee on July 8, 1999. An analytical assessment (virtual population analysis, VPA) of commercial and recreational total catch-at-age (landings plus discard) was conducted. Indices of recruitment and stock abundance were developed from Northeast Fisheries Science Center winter, spring and autumn, Massachusetts spring and autumn,. Rhode Island annual, Connecticut spring and autumn, New Jersey annual, and Delaware annual trawl survey data. Recruitment indices were also developed from young-of-year surveys conducted by the states of North Carolina, Virginia, Maryland, Delaware,  New Jersey,  Massachusetts, and Rhode Island. The 1982 and 1983 year classes are the largest in the 1982-1998 VPA time series, at 74 and 81 million fish, respectively. Recruitment declined from 1983 to 1988, with the 1988 year class the weakest at only 13 million fish. Recruitment since 1988 has improved, and the 1995 year class, at about 47 million fish, was the strongest since 1986.The 1997 and 1998 year classes appear to be below average, and are currently estimated to be about 23 and 26 million fish. VPA results indicate that the fishing mortality rate (F) on summer flounder was very high during 1982-1996, varying from 0.6 to 2.2. far in excess of the overfishing definition level (F m,,=0.26) defined by the MAFMC in Fishery Management Plan (FMP) Amendment 12. The fishing mortality rate peaked in 1992 at 2.2 (83% exploitation rate), and has since declined to 0.52 (37% exploitation rate) in 1998, but continues to exceed the management target. Total stock biomass reached 48.500 mt in 1983. before falling to 16,000 mt in 1989. Total stock biomass has increased substantially since 1991. and in 1998 was estimated to be 38,600 mt. The FMP Amendment 12 biomass target (BMSY) required to produce Maximum Sustainable Yield (MSY) is estimated to be BMSY =106,444 mt, and the FMP Amendment 12 biomass threshold of one-half BMSY = 53,222 mt. The stock is overfished and overfishing is occurring with respect to the FMP Amendment 12 overfishing definition. The assessment indicates that the stock is rebuilding from the low levels observed during 1989-90.
Folsomotoma Bagnall 1949
Creators: name: Fanciulli, Pietro Paolo
name: Leo, Chiara
name: Convey, Peter
name: Frati, Francesco
name: Carapelli, Antonio
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Entognatha
Collembola
Isotomidae
Folsomotoma

description: Key to species of Folsomotoma
1 1+1 eyes............................................................................................. 6
- more than 1+1 eyes.................................................................................... 2
2 2+2 eyes............................................................................................. 3
- more than 2+2 eyes.................................................................................... 4
3 Corpus of retinacle with 1 long stout seta; PAO twice as long as broad; AOIII consisting of 2 sensory rods behind cuticle fold................................................................................. F. minuta (Salmon 1949)
- Corpus of retinacle with 2 long curved setae; PAO three times as long as broad; AOIII consisting of 2 sensory rods fully exposed........................................................................ F. anomala (Salmon 1948)
4 3+3 eyes..................................................................... F. bioculata (Womersley 1906)
- 4+4 eyes............................................................................................. 5
5 manubrium with 2+2 ampoule setae; ventrally with 30 setae; Abd. III with 1 dorsal accp seta; Abd IV with 2 accp setae and 1 as seta..................................................................... F. kerguelensis (Enderlein 1903)
- manubrium with 3+3 spine–like setae; ventrally with 40 setae; Abd III with 1 lateral accp seta; Abd IV with 3 accp setae................................................................................. F. octooculata (Willem 1901)
6 length of body> 1.4 mm; corpus of retinacle with 8–12 setae; manubrium with 2+2 ampoule setae..................... 7
- length of body <1.4 mm; corpus of retinacle with 5–7 setae; manubrium with 1+1 ampoule setae...................... 8
7 Abd. IV with 3+3 accp setae, 1+1 as, 1+1 al.......................................... F. boerneri (Enderlein 1903)
- Abd. IV with 3+3 accp setae, without as and al setae...................................... F. subflava (Salmon 1949)
8 Body chaetotaxy plurichaetose; posterior edge of Abd. IV with three ordinary setae between the dorsal internal accp setae............................................................................. F. marionensis (Deharveng 1981)
- Body chaetotaxy paurochaetose; posterior edge of Abd. IV with one ordinary setae between the dorsal internal accp setae.................................................................................. F. punctata (Wahlgren 1939)
description: Published as part of Fanciulli, Pietro Paolo, Leo, Chiara, Convey, Peter, Frati, Francesco & Carapelli, Antonio, 2018, Redescription and neotype designation of the Antarctic springtail Folsomotoma octooculata (Collembola: Isotomidae), pp. 392-400 in Zootaxa 4392 (2) on page 399, DOI: 10.11646/zootaxa.4392.2.11, http://zenodo.org/record/1195334
Stormwater management in the New Jersey coastal zone
Creators: name: No Name Supplied
Publisher: name: No Publisher Supplied
Year: 1989

description: The purpose at the outset of this Manual preparation was to review New Jersey's coastal permitting program, as administered by the Department of Environmental Protection (NJDEP) Division of Coastal Resources, and determine if there were innovative practices and techniques which NJDEP could incorporate into its regulatory program in order to improve coastal water quality. This document discusses broad issues which encompass more far-reaching water quality considerations, such as the State's total permitting jurisdiction. It includes an overview of the physiographic setting and hydrology of the coastal zone,  commentary on the impact of development, background information on nonpoint source water pollution and development, and a best management practice decision matrix.
Design report; City (Brady's) dock reconstruction, city of Bayonne, New Jersey
Creators: name: No Name Supplied
Publisher: name: No Publisher Supplied
Year: 1982

description: This report describes the environmental assessment conducted by the city of Bayonne as planning for reconstruction of municipally-owned City Dock, also known as Brady's  Dock. The report includes the environmental assessment, describes the proposed action and the site environment, and reviews hydrologic studies and a geotechnical engineering report.
Dredging in New Jersey
Creators: name: No Name Supplied
Publisher: name: No Publisher Supplied
Year: 1980

description: The purpose of this paper is to analyze dredging issues and dredging needs in the State of New Jersey. The conclusion of the paper includes recommended steps to address the existing lack of dredging disposal sites by developing a Spoil Disposal Siting Program, and by continuing priority analysis for State dredging projects.
The Future of Agriculture: Revolutionizing Food Security through Engineered Plant Fabrication
Creators: name: Patrick R.
Publisher: name: Patrick R.
Year: 2025
Subjects: subject: Biotechnology
subject: Environmental biotechnology
subject: FOS: Environmental biotechnology
subject: Agricultural biotechnology
subject: FOS: Agricultural biotechnology
subject: Genetic engineering
subject: Genetic Engineering
subject: Precision Agriculture
subject: CRISPR-Cas Systems
subject: CRISPR-Cas Systems/genetics
subject: CRISPR-Cas9
subject: Crop Improvement
subject: Sustainable Farming
subject: Food Security
subject: Climate change adaptation
subject: Agricultural genetics
subject: Crops, Agricultural/genetics
subject: Agricultural Genomics
subject: Plant Propagation
subject: AI in Agriculture
subject: Soil Health
subject: Pest Resistance
subject: Crop Yield Enhancement
subject: Environmental impact
subject: Environmental Impact

description: The escalating challenges of food security, climate change, and population growthdemand the development of innovative solutions within agriculture. Engineered PlantFabrication (EPF) represents a cutting-edge approach to crop development that integratesadvanced genetic engineering, nanotechnology, scaffold-guided growth, and systems biology tocreate plants optimized for resilience, high yield, and nutritional enhancement.This thesis explores EPF as a transformative methodology for increasing crop productionwhile addressing the environmental and social challenges facing modern agriculture. Byharnessing the power of modern technology, EPF aims to develop climate-resilient crops capableof withstanding extreme environmental conditions, enhancing nutrient content, and contributingto global food security.
Guidelines and recommendations for coastal dune restoration and creation projects
Creators: name: No Name Supplied
Publisher: name: No Publisher Supplied
Year: 1985

description: This pamphlet has been designed by the New Jersey Department of Environmental Protection Division of Coastal Resources to: a) list recommended dune restoration and creation techniques, b) help municipalities plan effective and environmentally sound dune projects, and c) explain what information municipalities should submit to complete their applications for dune funds from the Division. An example of an application is provided at the end to demonstrate how information in this booklet should be used by municipalities.
Dasypsyllus (Avesopsylla) lasius subsp. lasius Rothschild 1909
Creators: name: Lareschi, Marcela
name: Sanchez, Juliana
name: Autino, Analía
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Siphonaptera
Ceratophyllidae
Dasypsyllus
Dasypsyllus lasius
Dasypsyllus (avesopsylla) lasius lasius (rothschild, 1909)

description: Dasypsyllus (Avesopsylla) lasius lasius (Rothschild, 1909)
NHM. Argentina—Buenos Aires: Foot of Sierra de la Ventana. Aves—Passeriformes—Hirundinidae— Notiochelidon cyanoleuca. Argentina—Tierra del Fuego, Antártida e Islas del Atlántico Sur: Ushuaia. Aves— Passeriformes—Hirundinidae— Tachycineta meyeni. Aramburú et al. (2009).
description: Published as part of Lareschi, Marcela, Sanchez, Juliana & Autino, Analía, 2016, A review of the fleas (Insecta: Siphonaptera) from Argentina, pp. 239-258 in Zootaxa 4103 (3) on page 240, DOI: 10.11646/zootaxa.4103.3.3, http://zenodo.org/record/262230
Loeblites chinensis Zhou and Li, new species
Creators: name: Zhou, De-Yao
name: Li, Li-Zhen
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Loeblites
Loeblites chinensis

description: Loeblites chinensis Zhou and Li, new species
Figs 1 A, 2B–H
Type material (1♂). Holotype: CHINA: ♂, labeled ‘ China: Yunnan Prov., Jinghong, Nabanhe N. R., Manfei, ca.
22°09'N, 100°41'E, 650 m, 9.i.2004, Li & Tang leg. / HOLOTYPE [red],printed, 1♂, Loeblites chinensis sp. n., det. Zhou & Li, 2014, SNUC’ (SNUC).
Diagnosis. Loeblites chinensis can be readily separated from other congeners by the aedeagus being widest near the middle in dorso-ventral view, and by the “m” shaped transverse sclerite near the middle of the aedeagal endophallus.
Description. Male. BL 2.76 mm; body (Fig. 1 A) large, very convex, reddish brown, legs and palpi slightly lighter. Head broadest at large, finely-faceted, and moderately convex eyes, HL 0.46 mm, HW 0.61 mm; tempora about as long as eye length in dorsal view, rounded, strongly convergent posteriorly; vertex over twice as broad as long, regularly convex; with small and indistinctly delimited median tubercle adjacent to occipital constriction; supraantennal tubercles prominent, frons relatively small, subtrapezoidal; clypeus very large, subtrapezoidal, convex. Head dorsum glossy, sparsely and finely punctate; setae sparse, moderately long. Antennae (Fig. 2 B) slender, AnL 2.05 mm, relative lengths of antennomeres: 1.0: 0.7: 1.3: 1.4: 1.6: 1.4: 1.4: 1.3: 1.2: 1.1: 1.1. Pronotum elongate, widest near anterior third, PL 0.76 mm, PWm 0.64 mm, PWb 0.53 mm; anterior and lateral margins rounded together, sides between middle and posterior third constricted, posterior margin nearly straight; posterior collar separated from disc by transverse row of four large, deep, slightly elongate pits; disc finely punctate; setae thin, moderately dense and long. Elytra oval, widest anterior to middle, narrowing toward apices. Punctation sparse and fine, punctures shallow and relatively indistinct; setation sparse, moderately long. EL 1.54 mm, EW 0.97 mm, EI 1.58. Humeral callus on each elytron moderately distinct; setae about as dense as those on pronotum. Legs long and slender, all femora with stalk-like basal half and clavate distal half, dorsal femoral groove developed nearly from base of femur up to apex, circular pore small, located in highest point of dorsal margin of clavate part; tibiae slender; all tibiae nearly straight. Aedeagus (Fig. 2 C–E) elongate, widest near middle, AeL 0.67 mm; endophallus (Fig. 2 F–G) with complicated system of strongly to weakly sclerotized structures; parameres (Fig. 2 H) lacking visible setae.
Distribution. Southern China: Yunnan.
Etymology. The specific epithet refers to the country where the type locality of the new species lies.
description: Published as part of Zhou, De-Yao & Li, Li-Zhen, 2015, Discovery of the genus Loeblites Franz (Coleoptera: Staphylinidae: Scydmaeninae) in China, with description of a new species, pp. 393-396 in Zootaxa 3986 (3) on pages 393-396, DOI: 10.11646/zootaxa.3986.3.8, http://zenodo.org/record/245973
Comparison of natural and altered estuarine systems: the Field data--volumes I and II
Creators: name: Limb, Janice
name: Ogrosky, Lesley
Publisher: name: No Publisher Supplied
Year: 1979

description: The purpose of the Estuarine Evaluation project was to study how a lagoon home development built on a salt marsh would affect the processes, functions, and conditions normally found in such an area. The data represent a compilation of the documents submitted by the principal investigators in fulfillment of their project responsibilities. The purpose of these reports is to establish data sets of the many components forming the estuarine system and to investigate the individual units.
Dasypsyllus (Neornipsyllus) araucanus
Creators: name: Lareschi, Marcela
name: Sanchez, Juliana
name: Autino, Analía
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Siphonaptera
Ceratophyllidae
Dasypsyllus
Dasypsyllus araucanus

description: Dasypsyllus (Neornipsyllus) araucanus (Jordan & Rothschild, 1920)
NHM. Chile—Cautín: Temuco. Aves—Passeriformes—Tyrannidae— Xolmis pyrope. Chile; Argentina—Neuquén. Río Negro: J.L. Roca. Aves—Passeriformes—Furnariidae— Asthenes sp. (nest). Mammalia—Rodentia— Cricetidae— Abrothrix olivacea. Hastriter & Schlatter (2006).
description: Published as part of Lareschi, Marcela, Sanchez, Juliana & Autino, Analía, 2016, A review of the fleas (Insecta: Siphonaptera) from Argentina, pp. 239-258 in Zootaxa 4103 (3) on page 240, DOI: 10.11646/zootaxa.4103.3.3, http://zenodo.org/record/262230
Loeblites
Creators: name: Zhou, De-Yao
name: Li, Li-Zhen
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Loeblites

description: Loeblites sp.
Figs 1 B, 2A, 2I –K
Material examined. 2♀♀, labeled ‘ China: Yunnan Prov., Baoshan City, Tengchong Hsien, Mingguang Town, Zizhi Village, 25°18'24''N, 99°48'22''E, 1230 m, 24.iv.2013, Dai, Song & Peng leg’.
Description. Body (Fig. 4B) large sized, BL 2.83 mm; HL 0.44–0.47 mm; HW 0.62–0.65 mm; AnL 2.58– 2.58 mm, relative lengths of antennomeres: 1.0: 0.9: 1.3: 1.6: 2.0: 1.7: 2.0: 1.9: 1.7: 1.5: 1.4; PL 0.82–0.85 mm; PWb 0.52– 0.53 mm; PWm 0.64–0.68 mm; EL 1.53 mm; EW 1.00– 1.02 mm; EI 1.51–1.53.
Spermatheca (Fig 2 I–J) large, SpD 0.076 mm, SpL 0.098 mm. Bursa copulatrix (Fig. 2 K) relatively large, BcL 0.23 mm; darkly sclerotized, slightly asymmetrical.
Comments. The very dense granules on the vertex, clypeus and pronotum and form of the spermatheca of this female are similar to those of Loeblites mastigicornis Franz from Thailand. However, unambiguous identification of this specimen will be possible when associated males are found.
description: Published as part of Zhou, De-Yao & Li, Li-Zhen, 2015, Discovery of the genus Loeblites Franz (Coleoptera: Staphylinidae: Scydmaeninae) in China, with description of a new species, pp. 393-396 in Zootaxa 3986 (3) on page 396, DOI: 10.11646/zootaxa.3986.3.8, http://zenodo.org/record/245973
Dasypsyllus (Neornipsyllus) comatus Jordan 1933
Creators: name: Lareschi, Marcela
name: Sanchez, Juliana
name: Autino, Analía
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Siphonaptera
Ceratophyllidae
Dasypsyllus
Dasypsyllus comatus

description: Dasypsyllus (Neornipsyllus) comatus Jordan, 1933
NHM. Argentina—Tierra del Fuego Antártida e Islas del Atlántico Sur: Estancia Viamonte. Aves— Charadriiformes—Charadriidae— Vanellus chilensis. Chile; Argentina—Tierra del Fuego, Antártida e Islas del Atlántico Sur: Isla del Rosario, Islas Malvinas. Aves—Passeriformes—Furnariidae— Asthenes anthoides, Cinclodes antarcticus. Hastriter & Schlatter (2006).
description: Published as part of Lareschi, Marcela, Sanchez, Juliana & Autino, Analía, 2016, A review of the fleas (Insecta: Siphonaptera) from Argentina, pp. 239-258 in Zootaxa 4103 (3) on page 240, DOI: 10.11646/zootaxa.4103.3.3, http://zenodo.org/record/262230
Additional file 1: of Gene expression signatures of neuroendocrine prostate cancer and primary small cell prostatic carcinoma
Creators: name: Tsai, Harrison
name: Lehrer, Jonathan
name: Alshalalfa, Mohammed
name: Erho, Nicholas
name: Elai Davicioni
name: Lotan, Tamara
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: Additional methods on bioinformatic processing and analysis, and additional legends. (DOCX 49 kb)
Phoenicopteriella Fain 1970
Creators: name: Skoracki, Maciej
name: Schmidt, Karl-Heinz
name: Marciniak, Natalia
name: Marciniak, Martyna
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Prostigmata
Ereynetidae
Phoenicopteriella

description: Genus Phoenicopteriella Fain, 1970
Phoenicopteriella Fain, 1970: 323.
Type species: Phoenicopteriella mirabilis Fain, 1970 by original designation.
Diagnosis. Palps with 3 segments. Hypostome with 1–2 pairs of setae. Propodonotal shield absent. Propodonotal region with 6 pairs of setae. Hysteronotal region with 5 pairs of setae (h2 absent). Agenital series with 1–2 pair of setae. Genital series with 2–3 pairs of setae. Pseudanal series with 1 pair of setae. Setae 1a, 3a and 4a present. Number of leg setae: coxae 1(2)–0(1)–1–1, trochanters 1–1–0–0, femora 7(5)–4–3–4(3), genua 4–4–3–3, tibiae 5– 3–3–3. Setae situated in anterior part of tarsi I–IV normally developed.
Remarks. Members of this genus are associated with birds of the orders Anseriformes and Phoenicopteriformes, and recorded in the Afrotropical, Nearctic, and Palaearctic regions (Fain 1956a, 1970; Clark 1958; Fain & Hyland 1975; Spicer 1977; Zabludovskaya 1998). This genus includes two species; both of them are recorded in Africa: PhOenicOpteriella mirabilis Fain, 1970, Ph. wOmersleyi (Fain, 1955).
description: Published as part of Skoracki, Maciej, Schmidt, Karl-Heinz, Marciniak, Natalia & Marciniak, Martyna, 2018, A review of mites of the subfamily Speleognathinae (Acariformes: Ereynetidae) parasitizing respiratory tracts of birds in the Afrotropical region, pp. 401-440 in Zootaxa 4403 (3) on page 412, DOI: 10.11646/zootaxa.4403.3.1, http://zenodo.org/record/1212849
Comparison of natural and altered estuarine systems: analysis
Creators: name: Limb, Janice
Publisher: name: No Publisher Supplied
Year: 1979

description: The purpose of the Estuarine Evaluation project was to study how a lagoon home development built on a salt marsh would affect the processes, functions, and conditions normally found in such an area. The "Analysis" section of the report draws upon selected portions of the field data to evaluate the effects of and the changes brought about by the lagoon development's presence.
Profiling Enzyme Activities in Models of Human Breast Cancer
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: The key molecular features of metastatic breast carcinomas that support their motile and invasive behavior are complex and poorly defined. It is thought that proteins, like proteases and catabolic enzymes, play a central role in allowing cell migration leading to metastasis to distant sites in the body. Conventional genomics and proteomics methods measure changes in transcript (RNA) and protein abundance, respectively, and therefore provide only an indirect assessment of protein function. For example, posttranslational forms of enzymes would remain undetected by these approaches. In our research group, we are addressing the need for higher-order functional proteomics technologies by developing and applying chemical probes that measure protein activity rather than abundance. We refer to this method as "activity-based protein profiling" (ABPP), and propose in this application, to apply ABPP to the analysis of enzyme activities expressed by human breast cancer line xenografts, in particular those protein enzmes related to cell migration. 
 
 
 
 
 
 
 
 Our aim is to provide a dynamic view that assigns "activity" (i.e, catalytic power) to specific changes during tumorigenesis. 
 
 
 
 
 
 
 
 We have developed and applied ABPP to whole cell, tissue, and fluid samples. In our initial research efforts, supported by a 2000-2002 CBCRP award, we successfully applied ABPP probes to the proteomic analysis of several enzyme classes across a panel of human breast cancer lines. These studies resulted in the identification of multiple enzyme activities, including several serine proteases, lipases, and glutathione S-transferases, that were differentially expressed in estrogen receptor (ER)(+) and ER(-) breast cancer lines. 
 
 
 
 
 
 
 
 A critical next step in validating the association of these enzymes with breast cancer is to demonstrate that their expression pattern is maintained in breast tumors in vivo, a setting more relevant to the actual disease. Accordingly, we now propose to determine the enzyme activity profiles of tumors and metastases derived from human breast cancer line xenografts grown in immunodeficient mice. We intend to take advantage of the mixed species nature of this breast cancer xenograft model to distinguish tumor enzyme activities that are expressed by cancer cells (human) and by infiltrating stroma (mouse). Finally, we will determine the enzyme activity profiles of metastasized variants of human breast cancer lines (e.g., bone, lung, and lymph nodes) and compare these ABPP profiles to those of the parent lines.
 
 
 
 
 
 
 
 By extending our studies to more relevant models of the disease, adding the stromal component, and studying metastatic variants from primary tumors we hope to better place specific proteases as promising targets for diagnosis and treatment of breast cancer.
The New Jersey submerged aquatic vegetation distribution atlas, final report; Distribution level maps with percent cover and species association information of submerged aquatic vegetation in New Jersey's coastal zone
Creators: name: No Name Supplied
Publisher: name: No Publisher Supplied
Year: 1979

description: Mapping of submerged aquatic vegetation (SAV) distribution  was conducted through aerial photography and surface ground truthing. This approach was used to map 27 US Geological Survey (USGS) quad sheets in New Jersey's coastal area during the 1979 growing season. Seaplane reconnaissance overflights and surface sampling were used to determine the general distribution, phenologic development stage and species associations present in New Jersey estuarine waters. Data showed that the distribution of submersed aquatic vegetation along the New Jersey coast is distinctly stratified in different sections: from Cape May north to Great Bay; from Great Bay to  Metedeconk; and north of Metedeconk, with a few exceptions.
Dasypsyllus (Neornipsyllus) ctenopius
Creators: name: Lareschi, Marcela
name: Sanchez, Juliana
name: Autino, Analía
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Siphonaptera
Ceratophyllidae
Dasypsyllus
Dasypsyllus ctenopius

description: Dasypsyllus (Neornipsyllus) ctenopius Jordan & Rothschild, 1920
NHM. Chile—Cautín: Temuco. Aves—Passeriformes—Formicariidae— Scytalopus magellanicus. Chile; Argentina—Neuquén: La Angostura. Río Negro: Piltriquitrón near El Bolsón. Mammalia—Rodentia— Cricetidae— Abrothix olivacea. Hastriter & Schlatter (2006).
description: Published as part of Lareschi, Marcela, Sanchez, Juliana & Autino, Analía, 2016, A review of the fleas (Insecta: Siphonaptera) from Argentina, pp. 239-258 in Zootaxa 4103 (3) on page 241, DOI: 10.11646/zootaxa.4103.3.3, http://zenodo.org/record/262230
New Jersey wetlands pilot project final report
Creators: name: No Name Supplied
Publisher: name: No Publisher Supplied
Year: 1971

description: Twenty-one maps at 1:2400 scale were produced for the Tuckerton and Mannington Meadows sites. These maps were prepared using color infrared and color aerial photography. Biological field checking supplemented photo interpretive techniques. The maps will be used to implement the "Wetlands Act of 1970" and they are sufficiently accurate and detailed to serve as useful wetlands management decision tools. Based on experience gained during the pilot program, statewide wetlands mapping in New Jersey can proceed using the methodologies developed in the period of June - August 1971.
Phoenicopteriella mirabilis Fain 1970
Creators: name: Skoracki, Maciej
name: Schmidt, Karl-Heinz
name: Marciniak, Natalia
name: Marciniak, Martyna
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Prostigmata
Ereynetidae
Phoenicopteriella
Phoenicopteriella mirabilis

description: Phoenicopteriella mirabilis Fain, 1970
(Fig. 8)
Phoenicopteriella mirabilis Fain, 1970: 323, figs. 25–27. Holotype in RBINS, examined.
Type host: Phoenicopterus ruber Linnaeus (Phoenicopteriformes: Phoenicopteridae) from North Africa.
Diagnosis. Palp tarsus with 2 setae (dorsal seta Sa-type, seta situated apically mushroom-like), solenidion absent; palp tibia without setae, solenidion present. Hypostome with 2 pairs of setae (Sa-type). Setae vi situated anterior to level of setae si. Setae vi, se, c2 Sa-type, sensillae si Na-type, genital setae Bd-type, other idiosomal setae (including coxal setae) Db-type. Agenital series with 1 pair of setae. Genital series with 3 pairs of setae. Number of leg setae: coxae 1–0–1–1, femora 7–4–3–4.
Host and distribution. Phoenicopteriformes (Phoenicopteridae): PhOenicOpterus ruber Linnaeus from North Africa (Fain 1970).
description: Published as part of Skoracki, Maciej, Schmidt, Karl-Heinz, Marciniak, Natalia & Marciniak, Martyna, 2018, A review of mites of the subfamily Speleognathinae (Acariformes: Ereynetidae) parasitizing respiratory tracts of birds in the Afrotropical region, pp. 401-440 in Zootaxa 4403 (3) on page 412, DOI: 10.11646/zootaxa.4403.3.1, http://zenodo.org/record/1212849
Additional file 4: Fig. S1. of Comparative transcriptome analysis of a lowly virulent strain of Erwinia amylovora in shoots of two apple cultivars – susceptible and resistant to fire blight
Creators: name: Puławska, Joanna
name: Kałużna, Monika
name: Warabieda, Wojciech
name: Mikiciński, Artur
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: Change of expression of known genes involved in pathogenicity of Erwinia amylovora between bacteria in TY medium (650-bact) and in planta (I-24 h and FR-24 h) 24 h after inoculation. (PDF 339 kb)
Delaware River waterfront park & marina
Creators: name: No Name Supplied
Publisher: name: No Publisher Supplied
Year: 1988

description: The purpose of this planning action is to study the feasibility of increasing public access to and enjoyment of the Delaware River waterfront in the southern portion of the City of Trenton. It investigates the practicality of expanding the existing boat ·launch, rehabilitating the marina, improving the existing bikeway/pedestrian walkway, and providing additional passive recreational opportunities along the riverfront.
Dasypsyllus (Neornipsyllus) stejnegeri
Creators: name: Lareschi, Marcela
name: Sanchez, Juliana
name: Autino, Analía
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Siphonaptera
Ceratophyllidae
Dasypsyllus
Dasypsyllus stejnegeri

description: Dasypsyllus (Neornipsyllus) stejnegeri (Jordan, 1929)
NMNH. Union of Soviet Socialist Republics—Bering Id, Rossiyskaya SFSR. Unrecorded host. Chile (uncertain data); Peru; United States of America; Argentina—Santa Cruz: Lago Argentina. Tierra del Fuego, Antártida e Islas del Atlántico Sur: Estancia Viamonte, Puerto Argentino and Isla Soledad (Islas Malvinas). Aves— Charadriiformes—Charadriidae— Vanellus chilensis. Passeriformes—Furnariidae— Asthenes anthoides. Icteridae— Sturnella loyca. Passeridae— Passer domesticus. Turdidae— Turdus falcklandii. Hastriter & Schlatter (2006) considered Dasypsyllus (N.) aemulus Jordan, 1933 a junior synonym of D. (N.) stejnegeri.
description: Published as part of Lareschi, Marcela, Sanchez, Juliana & Autino, Analía, 2016, A review of the fleas (Insecta: Siphonaptera) from Argentina, pp. 239-258 in Zootaxa 4103 (3) on page 241, DOI: 10.11646/zootaxa.4103.3.3, http://zenodo.org/record/262230
Hydrologic feasibility study for the north marina at Camden waterfront park for Cooper's Ferry development association
Creators: name: No Name Supplied
Publisher: name: No Publisher Supplied
Year: 1989

description: This report is the Phase I Hydrologic Study of a proposed two phase feasibility study for a North Marina at the Extended Wiggins Waterfront Park. Given the growing demand for boating and waterfront recreation, this proposed public marina, along with planned Wiggins Park improvements, would serve to establish Camden's waterfront into an attractive center of activity.