cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 4: Table S2. of A strategy to identify housekeeping genes suitable for analysis in breast cancer diseases
Creators: name: Tilli, Tatiana
name: ClĂĄudio Castro
name: Tuszynski, Jack
name: Carels, Nicolas
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Plant Biology

description: Protein-protein interaction for tHKGs and nHKGs. Data from the CCSB interactome database. (DOC 128 kb)
Additional file 5: Table S3. of A strategy to identify housekeeping genes suitable for analysis in breast cancer diseases
Creators: name: Tilli, Tatiana
name: ClĂĄudio Castro
name: Tuszynski, Jack
name: Carels, Nicolas
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Plant Biology

description: Protein-protein interaction for tHKGs and nHKGs. Data from the cancer-systemsbiology interactome database. (DOC 232 kb)
Additional file 2: Figure S1. of A strategy to identify housekeeping genes suitable for analysis in breast cancer diseases
Creators: name: Tilli, Tatiana
name: ClĂĄudio Castro
name: Tuszynski, Jack
name: Carels, Nicolas
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: Hematology

description: Standard curve and serial dilutions for nHKGs and tHKGs. The x axis represents the dilution series (1:800, 1:400, 1:200 and 1:100) and the y axis represents the mean of CT for each gene. The correlation coefficient r is given for each gene inside parentheses. (PDF 53 kb)
Additional file 1: Table S1. of A strategy to identify housekeeping genes suitable for analysis in breast cancer diseases
Creators: name: Tilli, Tatiana
name: ClĂĄudio Castro
name: Tuszynski, Jack
name: Carels, Nicolas
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology

description: Primer sequences for gene expression measure by qRT-PCR. (DOC 44 kb)
Additional file 7: Figure S4. of A strategy to identify housekeeping genes suitable for analysis in breast cancer diseases
Creators: name: Tilli, Tatiana
name: Castro, Cláudio
name: Tuszynski, Jack
name: Carels, Nicolas
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Plant Biology
subject: Computational Biology

description: Distribution of expression levels by normalized read counts of 10 nHKGs and 9 tHKGs in breast cancer RNA-seq (n = 95 paired samples) from TCGA. Boxes delimit lower and upper quartiles while vertical lines within boxes indicate median expression values. Lateral whiskers provide lower and higher values as left and right ticks, respectively. (PDF 371 kb)
Additional file 3: Figure S2. of A strategy to identify housekeeping genes suitable for analysis in breast cancer diseases
Creators: name: Tilli, Tatiana
name: ClĂĄudio Castro
name: Tuszynski, Jack
name: Carels, Nicolas
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Plant Biology
subject: Computational Biology

description: Subnetworks of nHKGs, tHKGs and transcription factors from STRING in graph layout. Nodes are for genes and links for interaction among them. The color code for edge notation is given on the bottom left. (PDF 301 kb)
Scaphisoma Loebl 1979
Creators: name: Ivan Löbl
name: Ryo Ogawa
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Scaphisoma

description: 5.2.19.13. Scaphisoma javanum LÖBL, 1979 (Fig. 12)
Scaphisoma javanum LÖBL, 1979b: 326, Fig. 13-16. Holotype 6, MZBI; type locality: Java, Bogor, Kebun Raya.
Additional material examined: Philippines, Palawan central, nr. Cabayugan, degraded rainforest, 2.XII.1995, leg. J. Kodada & B. Rigová, 1 6 (MHNG); Luzon, Lagunas Prov., Mt. Makiling, 4 km SE Los Banos, 7. and 9.V.1 977, leg. L.E. Watrous, 15 ex. (MHNG, BZLA); Luzon, Lagunas Mt. Makiling (summit road), 600 m, 21-22.and 28.XI.1995, I. Löbl, fungi on log, 19 ex. (MHNG, BZLA); Lagunas Prov., Mt. Makiling, above Mad Springs 400-700 m, degraded rainforest, 19-22.XI.1995, leg. J. Kodada, 1 6 (MHNG); Luzon, Lagunas, Mt. Banahaw, above Kinabuhayan, 600-700 m, I. Löbl, 24.XI.95, degrade rainforest floor litter, 1 6, 1♀ and with the same data but trail to Crystalino, leg. J. Kodada & B. Rygová, 1 6, 1♀ (MHNG); Leyte, Visca N Baybay, primary forest, 200-500 m, 22.II.-10.III.1991, leg. W. Schawaller, 1 6 (SMNS); Mindanao, Cotabato Prov., Burungkot, Upi, 150 0 ft., 1-9.I.1947 / Lot 154 taken on polypores / CNHM-Philippine Zool. Exped.(1946-47) leg. F.G. Werner, 6 66, 7♀♀ (FMNH, MHNG); Mindanao, Davao Prov., E. slope of Mt. McKinley, 3200 ft., 7-8.VIII.1946, lot 54, beating, leg. F.G. Werner, 1 6, 2♀, (FMNH); Mindanao, 30 km E of Malaybalay, Busdi, 1000 m, 5-9.V.1996, leg. Bolm, 1♀ (SMNS); Mindanao, Misamis Occ., 1700 m, Don Victoriano, 1-3.V.1996, leg. Bolm, 2♀♀ (SMNS).
D i s t r i b u t i o n: Indonesia: Thailand; Java; East Malaysia: Sarawak; East Malasia: Sarawak; Philippines: Palawan, Luzon, Leyte, Mindanao.
Comments: This species is widely distributed in South-East Asia. It is recorded here from the Philippines for the first time.
description: Published as part of Ivan Löbl & Ryo Ogawa, 2016, On the Scaphisomatini (Coleoptera, Staphylinidae, Scaphidiinae) of the Philippines, IV: the genera Sapitia ACHARD and Scaphisoma LEACH, pp. 1339-1492 in Linzer biologische Beiträge 48 (2) on page 1427, DOI: 10.5281/zenodo.247206
Additional file 1: Table S1. of The impact of direct-to-consumer personal genomic testing on perceived risk of breast, prostate, colorectal, and lung cancer: findings from the PGen study
Creators: name: Carere, Deanna
name: VanderWeele, Tyler
name: Moreno, Tanya
name: Mountain, Joanna
name: J. Roberts
name: Kraft, Peter
name: Green, Robert
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: SNPs included in commercial personal genomic testing panels for cancer risk assessment in July 2012. Table S2. Distribution of genetic risk estimates returned to 23andMe customers in the PGen Study. Table S3. Distribution of genetic risk estimates returned to Pathway Genomics customers in the PGen Study. Table S4. Sensitivity analyses: characterization of the outcome. Table S5. Sensitivity analyses: characterization of genetic risk results. Table S6. Sensitivity analyses: screening behaviors and missing data. (PDF 461Â kb)
Additional file 8: of EventPointer: an effective identification of alternative splicing events using junction arrays
Creators: name: Romero, Juan
name: Muniategui, Ander
name: Miguel, Fernando De
name: Aramburu, Ander
name: Montuenga, Luis
name: Pio, Ruben
name: Rubio, Angel
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Supplementary methods. Detection and classification of events. (DOCX 63Â kb)
Mesostrix
Creators: name: Mazur, Sławomir
name: Mokrzycki, Tomasz
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Histeridae
Mesostrix

description: Key to the species of the genus Mesostrix
1 Elytra with red maculae. Pygidium with elevated margin...................................... M. bimaculata sp. n.
- Elytra without maculae. Pygidial margin not elevated......................................................... 2
2 Fourth dorsal stria abbreviated basally. Pygidial segments reddish............................... M. pentatoma Mazur
- Fourth dorsal stria complete basally. Pygidial segments black.................................... M. nigropyga sp. n.
description: Published as part of Mazur, Sławomir & Mokrzycki, Tomasz, 2014, Two new species of Mesostrix Mazur, 1994 (Coleoptera: Histeridae) from Southeast Asia, pp. 197-200 in Zootaxa 3755 (2) on page 200, DOI: 10.11646/zootaxa.3755.2.6, http://zenodo.org/record/226366
Additional file 1: of EventPointer: an effective identification of alternative splicing events using junction arrays
Creators: name: Romero, Juan
name: Muniategui, Ander
name: Miguel, Fernando De
name: Aramburu, Ander
name: Montuenga, Luis
name: Pio, Ruben
name: Rubio, Angel
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology

description: Vignette of the use of the aroma.affymetrix framework to perform a gene expression analysis (SRSF1 knock-down analysis) with HTA 2.0 data. (PDF 300Â kb)
Additional file 4: of EventPointer: an effective identification of alternative splicing events using junction arrays
Creators: name: Romero, Juan
name: Muniategui, Ander
name: Miguel, Fernando De
name: Aramburu, Ander
name: Montuenga, Luis
name: Pio, Ruben
name: Rubio, Angel
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Table with primers used for validation and sizes of the expected splicing variants. (DOCX 24Â kb)
Additional file 2: of EventPointer: an effective identification of alternative splicing events using junction arrays
Creators: name: Romero, Juan
name: Muniategui, Ander
name: Miguel, Fernando De
name: Aramburu, Ander
name: Montuenga, Luis
name: Pio, Ruben
name: Rubio, Angel
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Marine Biology

description: Vignette of the use of the EventPointer on the study of SRSF1 using HTA 2.0 data. (PDF 246Â kb)
Scaphisoma Pic 1915
Creators: name: Ivan Löbl
name: Ryo Ogawa
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Scaphisoma

description: 5.2.19.14. Scaphisoma luteomaculatum PIC, 1915 (Fig. 18)
Scaphosoma luteomaculatum PIC, 1915: 5. Lectotype 6, MNHN; type locality: Java, Palabuan. Lectotype designation and genital characters: LÖBL 2015a: 111, Figs 103-106.
Scaphosoma sapitense var. infasciatum ACHARD, 1920b: 131. Lectotype ♀, MNHN; type locality: Lombok, Sapit, 2000ft. Lectotype designation and synonymy: LÖBL 2015a: 111.
Scaphisoma dansalanense LÖBL, 1972: 95. Holotype 6, ZMUB; type locality: Mindanao, Dansalan near Lanao. Synonymy: LÖBL 2015a: 111.
A d d i t i o n a l m a t e r i a l e x a m i n e d: Mindanao, Davao Distr. Tagum, Sitio Taglawig, Maco, near sea level, X.1946, original dipterocarp forest, leg. H. Hoogstraal & D. Heyneman, 29 ex. (FMNH, MHNG, BZLA); Mindanao, Mt. Talemo, 30.VI.1977, leg. M. Satô, 1 ex. (MHNG); Mindanao, Mt. Malambo, 1.VII.1977, leg. M. Satô, 2 ex. (EUMJ, MHNG); Palawan, Binaluan, 1♀ (SMND).
D i s t r i b u t i o n: Philippines: Palawan, Mindanao; Indonesia.
Comments: PIC (1921: 165) recorded the species from "Carin Ascinii Cheba" [in Myanmar]. The respective voucher material remains to be verified.
description: Published as part of Ivan Löbl & Ryo Ogawa, 2016, On the Scaphisomatini (Coleoptera, Staphylinidae, Scaphidiinae) of the Philippines, IV: the genera Sapitia ACHARD and Scaphisoma LEACH, pp. 1339-1492 in Linzer biologische Beiträge 48 (2) on pages 1427-1428, DOI: 10.5281/zenodo.247206
MOESM1 of Efficacy of combining oral Chinese herbal medicine and NB-UVB in treating psoriasis vulgaris: a systematic review and meta-analysis
Creators: name: Lihong Yang
name: Zhang, Claire
name: May, Brian
name: Jingjie Yu
name: Xinfeng Guo
name: Zhang, Anthony
name: Xue, Charlie
name: Chuanjian Lu
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Pharmacology
subject: Ecology
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Computational Biology

description: Additional file 1: Table S1. Herbs used in the included studies.
Additional file 1: Appendix A. of Key stakeholder perceptions about consent to participate in acute illness research: a rapid, systematic review to inform epi/pandemic research preparedness
Creators: name: Gobat, Nina
name: Gal, Micaela
name: Francis, Nick
name: Kerenza Hood
name: Watkins, Angela
name: Turner, Jill
name: Moore, Ronald
name: Webb, Steve
name: Butler, Christopher
name: Nichol, Alistair
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Rapid review full search strategy. Description of data: record of the search strategy used for each database. (DOCX 60 kb)
Additional file 2: Appendix B. of Multimorbidity and functional decline in community-dwelling adults: a systematic review
Creators: name: Ryan, Aine
name: Wallace, Emma
name: OâHara, Paul
name: Smith, Susan
Publisher: name: Figshare
Year: 2015
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: Tool to Assess Risk of Bias in Cross-sectional studies. (DOC 39 kb)
Additional file 3: Appendix C. of Multimorbidity and functional decline in community-dwelling adults: a systematic review
Creators: name: Ryan, Aine
name: Wallace, Emma
name: OâHara, Paul
name: Smith, Susan
Publisher: name: Figshare
Year: 2015
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Excluded Papers. (DOCX 20 kb)
Gracilidris humilioides Wild & Cuezzo, 2006, comb. nov.
Creators: name: Wild, A. L.
name: Cuezzo, F.
Publisher: name: Zenodo
Year: 2006
Subjects: Biodiversity
Taxonomy
Gracilidris
Gracilidris humilioides
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Iridomyrmex
Iridomyrmex humilioides

description: Gracilidris humilioides (Wilson 1985), comb. nov.
(Figs. 12-14)
Iridomyrmex humilioides Wilson 1985: 33.
Linepithema humilioides (Wilson): Shattuck 1992a: 16. First combination in Linepithema.
Type material examined
Holotype. Worker. Dominican amber [no further data] (MCZC).
Worker measurements
Holotype: HL 0.67, HW 0.44, SL 0.74, FL 0.53, LHT 0.62, PW 0.37, OI 1.8, SI 167, CI 66.
Worker description
As given in generic description, but with some characters obscured, including the mandibular dentition and the petiole. Additional details include:
Head in full frontal view longer than broad (CI = 66). Sides of head subparallel and convex, head slightly wider posterior than anterior to compound eyes. Compound eyes of moderate size (OI = 1.8), with about 70 ommatidia, and surpassing lateral margins in full frontal view.
Dorsal surfaces of head, mesosoma, and metasoma devoid of erect setae.
Discussion
This species is known from a single worker specimen, briefly described by Wilson (1985) and placed in the genus Iridomyrmex. At the time, Iridomyrmex had a broad definition encompassing both old world and new world forms. When Shattuck (1992a) redefined Iridomyrmex and moved most of the new world species into Linepithema, he transferred humilioides as well even though humilioides lacks many of the apomorphies that define extant Linepithema. In particular, humilioides does not possess the medially concave anterior clypeal margin of Linepithema, and the eyes of humilioides are located considerably more posterior and lateral on the head than in any of the extant Linepithema species.
The affinity of humilioides with Gracilidris is supported by the position and shape of the eyes, the length of the legs and antennal scapes, the reduced pilosity, and by the shape and forward projection of the clypeus. This combination of characters is unique among the dolichoderines. However, this association should be regarded as tentative. Both humilioides and pombero are in many respects generalized dolichoderine ants, and some of their similarity may be pleisiomorphic. Additionally, many key characters of Gracilidris are not visible in the fossil including, unfortunately, the petiole.
description: Published as part of Wild, A. L. & Cuezzo, F., 2006, Rediscovery of a fossil dolichoderine ant lineage (Hymenoptera: Formicidae: Dolichoderinae) and a description of a new genus from South America., pp. 57-68 in Zootaxa 1142 on pages 66-68
Additional file 1: Appendix A. of Multimorbidity and functional decline in community-dwelling adults: a systematic review
Creators: name: Ryan, Aine
name: Wallace, Emma
name: OâHara, Paul
name: Smith, Susan
Publisher: name: Figshare
Year: 2015
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: Tool to Assess Risk of Bias in Cohort Studies (Cochrane). (DOC 43 kb)
Additional file 4: Appendix D: of Multimorbidity and functional decline in community-dwelling adults: a systematic review
Creators: name: Ryan, Aine
name: Wallace, Emma
name: OâHara, Paul
name: Smith, Susan
Publisher: name: Figshare
Year: 2015
Subjects: subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: Included Conditions. (DOC 84 kb)
Scaphisoma Pic 1926
Creators: name: Ivan Löbl
name: Ryo Ogawa
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Scaphisoma

description: 5.2.19.16. Scaphisoma mindanaosum PIC, 1926 (Fig. 21)
Scaphosoma mindanaosum PIC, 1926: 2. Lectotype ♀, MNHN; type locality: Mindanao P. Bango. Lectotype designation and male genital characters: LÖBL 1972: 107. Additional published locality: Mindanao, Dansalan near Lanao, leg. G. Böttcher: LÖBL 1972: 107.
A d d i t i o n a l m a t e r i a l e x a m i n e d: Palawan Central, Conception, sea level, I. Löbl, 6.-7.XII.1995, fungi on logs, bark, 4 ex. (MHNG); Palawan, Olangoan, sea level, 18 km NE San Rafael, 5-6-XII.1995, leg. I. Löbl, 7 ex. (MHNG, BZLA); Palawan Central, Sabang, trail to Underground River, sea level, 30.XI.1995, fungi on logs, leg. I. Löbl, 1 ex. (MHNG); Palawan Central, Sabang, 50-100 m, degraded rainforest on slope, 30.XI.1995, leg. J. Kodada, 8 ex. (MHNG); Palawan Central, Sabang, N of Mt. St. Paul, 11-13.VII.1977, leg. M. Satô, 2 ex. (MHNG); Luzon, Lagunas Prov., Mt. Makiling, 4 km SE Los Banos, 12.IV.1977, leg. L.E. Watrous, 4 ex. (MHNG); Luzon, Lagunas Prov., Mt. Makiling, 20.VI.1978, leg. N. Ohbayashi, 1 ex. (EUMJ); Luzon, Lagunas Prov., Mt. Makiling, 17, 18.VI.1977, leg. M. Satô, 1 ex. (MHNG); Luzon, Ifugao Prov., Mt. Polis 1900 m, 4-5.VI.1977, M. Satô, 2 ex. (MHNG); Leyte, Visca N Baybay, primar. forest, 200-500 m, 2.III.1991, leg. W. Schawaller et al., 1 ex. (SMNS); Mindanao, Mainit Hot Springs, 28.VII.1978, leg. M. Satô, 2 ex. (MHNG); Mindanao, Baracatan, 1500 m, 27- 29.VI.1977, M. Satô, 3 ex. (MHNG); Mindanao, Tagurano, 1000 m, 25, 26.VI.1977, leg. M. Satô, 1 ex. (MHNG); Mindanao, South Cotabato Prov., Maitum, 150 m, 12.VIII.1988, leg. M. Sakai, 2 ex. (EUMJ); Mindanao, Cotabato Prov., Burungkot, Upi, 1500 ft., 1-9.I.1947, taken on polypores and under bark, leg. F. G. Werner, 8 ex. (FMNH, MHNG); Mindanao, 30 km NW of Maramag, Bagongsilang, 1700 m, 13-17.V.1996, leg. Bolm, 2 ex. (SMNS).
D i s t r i b u t i o n: Philippines: Luzon, Palawan, Mindanao.
Comments: The aedeagus of this species was illustrated and described in LÖBL 1972, and the aedeagal characters of the similar and closely allied S. luteomaculatum were given in LÖBL 2015a.
description: Published as part of Ivan Löbl & Ryo Ogawa, 2016, On the Scaphisomatini (Coleoptera, Staphylinidae, Scaphidiinae) of the Philippines, IV: the genera Sapitia ACHARD and Scaphisoma LEACH, pp. 1339-1492 in Linzer biologische Beiträge 48 (2) on page 1429, DOI: 10.5281/zenodo.247206
Eogmelina Copilaş-Ciocianu & Ionesi, 2024, gen. nov.
Creators: name: Copilaş-Ciocianu, Denis
name: Ionesi, Viorel
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Amphipoda
Gammaridae
Eogmelina

description: Genus † Eogmelina gen. nov.
Zoobank LSID urn:lsid:zoobank.org:act: 89D84 AB9-3C24-4B60-BE3C-D0B81C35FEA0
Zoobank publication LSID: urn:lsid:zoobank.org:pub: 18AD77A2-5812-4C84-B93C-8BB527A DEF38
Type species. † Eogmelina moldavica gen. et sp. nov. (fig. 5)
Other species. † Eogmelina prisca gen. et sp. nov. (fig. 6)
Diagnosis. Body tall and robust (up to 22 mm length) with or without dorsal pleonal projections, lateral pereonal projections absent, coxal plates I-III taller than wide, urosomites free and devoid of humps and tubercles. Antenna 1 peduncle short, not extending beyond the distal end of the 4th peduncular segment of antenna 2. The 3rd peduncular segment of antenna 2 is shorter than half the length of the 4th segment; 4th segment length subequal to head length. Propodi of gnathopods 1–2 similar in size and shape, rectangular, moderately developed, palm length subequal to posterior margin. Pereopods 3–7 robust and well developed, dactyli moderately developed and relatively straight. Pereopods 3–4 carpus longer than wide, not expanded. Length of pereopod 7 exceeds 0.4 of body length. Pereopod 7 basis taller than wide, posterior margin convex, without postero-distal lobe. Epimeral plates 2–3 with acute postero-inferior corners. Uropod 3 extends beyond the distal end of uropod 1, endopod/exopod ratio is 0.9.
Differential diagnosis. Eogmelina gen. nov. can be readily distinguished from the fossil Ponto-Caspian genera Praegmelina and Andrussovia by the following characters: 1) combined length of antenna 2 peduncle segments 4 and 5 longer than head length (vs. shorter), 2) antenna 1 peduncle not reaching the distal end of the 4th peduncular segment of antenna 2 (vs. extending beyond it) (see key).
Etymology. Derived from the Greek word eos (dawn), referring to its early appearance and plesiomorphic morphology, and the name of the extant genus Gmelina Sars, 1894, to which it bares a superficial resemblance.
description: Published as part of Copilaş-Ciocianu, Denis & Ionesi, Viorel, 2024, New Miocene fossil taxa illuminate the evolution and paleobiogeography of the Ponto-Caspian gammaroid amphipod radiation, pp. 268-288 in Contributions to Zoology 93 on pages 275-276, DOI: 10.1163/18759866-BJA10061, http://zenodo.org/record/12518921
Additional file 2: Figure S2. of Fanconi anemia genes in lung adenocarcinoma- a pathway-wide study on cancer susceptibility
Creators: name: Yang, Shi-Yi
name: Chia-Ni Hsiung
name: Yao-Jen Li
name: Gee-Chen Chang
name: Ying-Huang Tsai
name: Kuan-Yu Chen
name: Ming-Shyan Huang
name: Wu-Chou Su
name: Yuh-Min Chen
name: Hsiung, Chao
name: Pan-Chyr Yang
name: Chien-Jen Chen
name: Pei-Ei Wu
name: Jyh-Cherng Yu
name: Shen, Chen-Yang
name: Hsu, Huan-Ming
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Linkage disequilibrium (LD) between the single-nucleotide polymorphisms (SNPs) of individual Fanconi anemia (FA) genes genotyped in Taiwanese control men and women. The strength of the LD between SNPs, as indicated by the color scheme, was measured using a combination of the statistic D’ and the logarithm of the odds ratio for linkage (LOD) score (dark red shading, D’ = 1 and LOD score ≥ 2; light red shading, D’
Additional file 1: Figure S1. of Fanconi anemia genes in lung adenocarcinoma- a pathway-wide study on cancer susceptibility
Creators: name: Yang, Shi-Yi
name: Chia-Ni Hsiung
name: Yao-Jen Li
name: Gee-Chen Chang
name: Ying-Huang Tsai
name: Kuan-Yu Chen
name: Ming-Shyan Huang
name: Wu-Chou Su
name: Yuh-Min Chen
name: Hsiung, Chao
name: Pan-Chyr Yang
name: Chien-Jen Chen
name: Pei-Ei Wu
name: Jyh-Cherng Yu
name: Shen, Chen-Yang
name: Hsu, Huan-Ming
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Linkage disequilibrium (LD) block and estimates of the pairwise r2 for single-nucleotide polymorphisms (SNPs) of individual Fanconi anemia (FA) genes in Caucasians (CEU) and Asians (CHBâ  +â  JPT, i.e., combination of Chinese and Japanese) from the HapMap release 22. The size of each triangle is proportional to the size of each FA gene in individual FA complexes. (PDF 113 kb)
Additional file 3: Figure S3. of Fanconi anemia genes in lung adenocarcinoma- a pathway-wide study on cancer susceptibility
Creators: name: Yang, Shi-Yi
name: Chia-Ni Hsiung
name: Yao-Jen Li
name: Gee-Chen Chang
name: Ying-Huang Tsai
name: Kuan-Yu Chen
name: Ming-Shyan Huang
name: Wu-Chou Su
name: Yuh-Min Chen
name: Hsiung, Chao
name: Pan-Chyr Yang
name: Chien-Jen Chen
name: Pei-Ei Wu
name: Jyh-Cherng Yu
name: Shen, Chen-Yang
name: Hsu, Huan-Ming
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Linkage disequilibrium (LD) between the single-nucleotide polymorphisms (SNPs) of FANCC genotyped in the cases and controls for both males and females in the present study. The strength of the LD between SNPs, as indicated by the color scheme, was measured using a combination of the statistic D’ and the logarithm of the odds ratio for linkage (LOD) score (dark red shading, D’ = 1 and LOD score ≥ 2; light red shading, D’
Scaphisoma bilobum
Creators: name: Ivan Löbl
name: Ryo Ogawa
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Scaphisoma
Scaphisoma bilobum

description: 5.2.20. The Scaphisoma bilobum species group
Four new species, S. bilobum, S. duplex, S. nishikawai, and S. spatuloides, possess aedeagus with trifid median lobe, as members of the S. haemorrhoidale group. They differ conspicuously from members of the latter group by the asymmetrical apical process of the median lobe partly overlapped by the apicodorsally expanded basal bulb.
description: Published as part of Ivan Löbl & Ryo Ogawa, 2016, On the Scaphisomatini (Coleoptera, Staphylinidae, Scaphidiinae) of the Philippines, IV: the genera Sapitia ACHARD and Scaphisoma LEACH, pp. 1339-1492 in Linzer biologische Beiträge 48 (2) on page 1429, DOI: 10.5281/zenodo.247206
Additional file 1: Table S1. of Patterns of diagnostic imaging and associated radiation exposure among long-term survivors of young adult cancer: a population-based cohort study
Creators: name: Daly, Corinne
name: Urbach, David
name: ThĂŠrĂ¨Se Stukel
name: Nathan, Paul
name: Deitel, Wayne
name: Paszat, Lawrence
name: Wilton, Andrew
name: Baxter, Nancy
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: International classification of disease (ICD)-9 codes and descriptions of malignancy types. Table S2. Administrative data codes used for identifying evidence of recurrent disease in young adult cancer survivors. Table S3. Ontario Health Insurance Plan (OHIP) professional fee codes for plain radiography, nuclear medicine, computed tomography, ultrasound and magnetic resonance imaging studies and effectives dose estimates for imaging studies associated with diagnostic radiation used in this study. (PDF 92Â kb)
Aphodiini Leach 1815
Creators: name: Kakizoe, Showtaro
name: Jiang, Ri-Xin
name: Cai, Hao-Hong
name: Wang, Shuo
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae

description: Tribe Aphodiini Leach, 1815
Type genus. Aphodius Hellwig, 1798 (see Alonso-Zarazaga & Krell 2011).
See Dellacasa et al. (2001), and Smith & Skelley (2007) for synonymies and detailed description.
The new taxon shares following synapomorphies with the members of Aphodiini: 1) labrum and mandibles invisible in antero-dorsal view; 2) scutellum well visible in dorsal view; 3) pronotum without any longitudinal groove; head without any longitudinal groove or costa; 4) protibia not perpendicularly truncate apically; 5) metatibial spurs separated by basal tarsomere; abdominal ventrites not fused, freely moveable.
description: Published as part of Kakizoe, Showtaro, Jiang, Ri-Xin, Cai, Hao-Hong & Wang, Shuo, 2021, Sphaeraphodius gaohani, a new genus and species of Aphodiini (Coleoptera Scarabaeidae: Aphodiinae) from Guangxi, China, pp. 333-340 in Zootaxa 4949 (2) on page 334, DOI: 10.11646/zootaxa.4949.2.6, http://zenodo.org/record/4636467
MOESM2 of Predicting direct and indirect breeding values for survival time in laying hens using repeated measures
Creators: name: Brinker, Tessa
name: Ellen, Esther
name: Veerkamp, Roel
name: Bijma, Piter
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology
subject: Computational Biology

description: Additional file 2. Translating breeding values and genetic parameters of RMM.t to survival days. Detailed description on translating breeding values and genetic parameters from RMM.t to survival days.
Sphaeraphodius gaohani Kakizoe, Jiang & Wang 2021, new species
Creators: name: Kakizoe, Showtaro
name: Jiang, Ri-Xin
name: Cai, Hao-Hong
name: Wang, Shuo
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Sphaeraphodius
Sphaeraphodius gaohani

description: Sphaeraphodius gaohani Kakizoe, Jiang & Wang, new species
(Figs. 1A – 4F)
Type materials. Holotype, ♀, labeled “ China: Guangxi (), Guigang City (), Guiping City (), Chongbiao (ṘR), 30.IV.2020, local people leg., H: ~ 400 m, in nest of the termite Macrotermes sp.” (MYNU). Paratype, 1 ♀, same label data as for the holotype (SKCJ).
Description of holotype female. Head (Figs. 1A–B, 2A) narrower than pronotum with a ratio of pronotal width to head width ca. 1.46. Pronotum (Figs. 1A–B) distinctly shorter than elytra with a ratio of elytral length to pronotal length ca. 2.25. Elytra (Fig. 1A) with a ratio of length to width ca. 1.17. Other character status are as described for the description of the genus.
Male. Unknown.
Measurements. Body length 4.2 mm; maximum width of head 1.5 mm; median dorsal length of pronotum 1.2 mm, maximum width 2.2 mm; sutural length of elytra 2.7 mm, maximum width 2.3 mm; maximum width of epipharynx 0.50 mm.
Differential diagnosis. This species is readily distinguished from other members of Aphodiini by the generic diagnostic features described above.
Etymology. Dedicated to Mr. Han Gao, the donator of the holotype.
Distribution. China: Guangxi Province.
Provisional symbiotic host. Macrotermes sp. (Figs. 4G–I; see discussion).
Collecting circumstances. All specimens were collected from the nest of Macrotermes sp., in a typical semitropical evergreen broad-leaf forest.
description: Published as part of Kakizoe, Showtaro, Jiang, Ri-Xin, Cai, Hao-Hong & Wang, Shuo, 2021, Sphaeraphodius gaohani, a new genus and species of Aphodiini (Coleoptera Scarabaeidae: Aphodiinae) from Guangxi, China, pp. 333-340 in Zootaxa 4949 (2) on pages 338-339, DOI: 10.11646/zootaxa.4949.2.6, http://zenodo.org/record/4636467
MOESM1 of Predicting direct and indirect breeding values for survival time in laying hens using repeated measures
Creators: name: Brinker, Tessa
name: Ellen, Esther
name: Veerkamp, Roel
name: Bijma, Piter
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Plant Biology
subject: Computational Biology

description: Additional file 1. Predicting phenotypes using STM, RMM.t, RMM.p, and GLMM. Detailed description on calculating predicted phenotypes using STM, RMM.t, RMM.p, and GLMM.
Additional file 11: of Transcriptional transitions in Nicotiana benthamiana leaves upon induction of oil synthesis by WRINKLED1 homologs from diverse species and tissues
Creators: name: Ă Sa Grimberg
name: Carlsson, Anders
name: Marttila, Salla
name: Rishikesh Bhalerao
name: Hofvander, Per
Publisher: name: Figshare
Year: 2015
Subjects: subject: Molecular Biology
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Plant Biology

description: Primers used in RT-qPCR analyses. (DOCX 14Â kb)
Scaphisoma duplex Löbl & Ogawa, 2016, nov.sp.
Creators: name: Ivan Löbl
name: Ryo Ogawa
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Scaphisoma
Scaphisoma duplex

description: 5.2.20.2. Scaphisoma duplex nov.sp. (Figs 219, 220)
T y p e m a t e r i a l: Holotype 6: Philippines, Luzon: Lagunas Mt.Banahaw nr school about 1km from Kinabuhayan, 500m, degraded rainforest, 28,XI.1995 [leg. J. Kodada] (MHNG). Paratypes: Luzon, Lagunas Prov., Mt. Makiling 4 km SE Los Banos, 11.IV.1977, leg. L. Watrous, 1 6, 1♀ (MHNG); with same data but 8.IV., 1♀ (MHNG).
D e s c r i p t i o n: Length 1.72 mm, width 1.20 mm. Head and body ochreous, apical abdominal segments and appendages lighter than most of body. Very similar to and with most characters as in S. bilobum. Antennae somewhat shorter, with length/width ratio of antennomeres as: III 10/6: IV 33/5: V 45/7: VI 40/7: VII 48/10: VIII 36/7: IX 46/9: X 45/10: XI 50/10. Inner apical angles of elytra about at level of outer angles, submesocoxal areas 0.03 mm, hardly as fourth of intervals to metacoxae; submesocoxal lines almost parallel; apicomedian area of metaventrite flat; metanepisterna narrowed anteriad; sternite 1 with few coarse basomedian punctures; submetaxocal areas 0.04 mm, about as fourth of intervals to apical margin of sternite. Aedeagus (Figs 219, 220) 0.76 mm long. Median lobe and parameres similar as those in S. bilobum, apical process of median lobe conspicuously widened posterior mid-length and truncate at apex (lateral view).
Ety molo gy: The species epithet is a noun derived from Latin duo (two) and Greek plax (flat), referring to characters shared with S. bilobum.
C o m p a r a t i v e n o t e s: The species has a unique shape of the apical process of the median lobe and thus may be easily distinguished by its aedeagal characters.
description: Published as part of Ivan Löbl & Ryo Ogawa, 2016, On the Scaphisomatini (Coleoptera, Staphylinidae, Scaphidiinae) of the Philippines, IV: the genera Sapitia ACHARD and Scaphisoma LEACH, pp. 1339-1492 in Linzer biologische Beiträge 48 (2) on pages 1430-1431, DOI: 10.5281/zenodo.247206
Additional file 1: of Transcriptional transitions in Nicotiana benthamiana leaves upon induction of oil synthesis by WRINKLED1 homologs from diverse species and tissues
Creators: name: Ă Sa Grimberg
name: Carlsson, Anders
name: Marttila, Salla
name: Rishikesh Bhalerao
name: Hofvander, Per
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: Developmental Biology
subject: Plant Biology

description: Complete cDNA sequences of WRI1 homologs. Sequences are from potato embryo (StWRI1em), poplar stem (PtWRI1ca), oat endosperm (AsWRI1es), and nutsedge tuber parenchyma (CeWRI1tp). (DOCX 15Â kb)
Scaphisoma nishikawai Löbl & Ogawa, 2016, nov.sp.
Creators: name: Ivan Löbl
name: Ryo Ogawa
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Scaphisoma
Scaphisoma nishikawai

description: 5.2.20.3. Scaphisoma nishikawai nov.sp. (Figs 221-223)
T y p e m a t e r i a l: Holotype 6: Mindanao Kraan, Sultan Kadarat Prov. 12.VIII.1985 Y. Nishikawa leg. (EUMJ).
D e s c r i p t i o n: Length 1.72 mm, width 1.20 mm. Head and body ochreous, apical abdominal segments and appendages lighter than most of body. Very similar to S. bilobum and S. duplex, body somewhat lighter. Elytra with distinctly converging and punctate sutural striae; discal punctation fairly fine and dense, with most puncture intervals larger than puncture diameters. Mesepimera shorter, slightly longer than intervals to mesocoxae. Metaventrite with deep median impression, strigulate microsculpture on area between mesocoxae and metacoxae. Submesocoxal areas 0.03 mm, about as fifth of intervals to metacoxae. Metanepisternum narrowed anteriad. Sternite 1 with row of coarse basomedian punctures; submetacoxal areas about as third of interval to apical margin. Aedeagus (Figs 221-223) 1.02 mm long, similar to that of S. bilobum but apical process of median lobe conspicuously narrowed toward mid-length in dorsal view, oblique and at tip widened in lateral view. Internal sac with robust tooth pointed obliquely dorsally, lacking group teeth in apical section.
E t y m o l o g y: The species is dedicated to its collector, Yoshiaki Nishikawa, from the Otemon Gakuin University, Osaka, Japan.
C o m p a r a t i v e n o t e s: The species has a unique shape of the apical process of the median lobe and thus may be easily distinguished by its aedeagal characters.
description: Published as part of Ivan Löbl & Ryo Ogawa, 2016, On the Scaphisomatini (Coleoptera, Staphylinidae, Scaphidiinae) of the Philippines, IV: the genera Sapitia ACHARD and Scaphisoma LEACH, pp. 1339-1492 in Linzer biologische Beiträge 48 (2) on page 1431, DOI: 10.5281/zenodo.247206
Calyptooecia Winston 1984
Creators: name: Almeida, Ana Carolina S.
name: Souza, Facelucia B. C.
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Bryozoa
Gymnolaemata
Cheilostomatida
Cleidochasmatidae
Calyptooecia

description: Genus Calyptooecia Winston, 1984
Type species. Calyptooecia insidiosa Winston, 1984, by original designation.
Diagnosis (amended). Colony encrusting, multilaminar. Zooids erect, roughly hexagonal, the frontal skeletal surface perforated by rounded to cruciform pores. Orificial anter high-arched, with broad shallow poster delimited from anter by stout condyles. No ovicells; embryos brooded in dimorphic female zooids with smaller orifices and less frontal area than non-brooding zooids.
Remarks. Calyptooecia was erected by Winston (1984) to accommodate only the type species, C. insidiosa, upon which the generic characters were necessarily exclusively based. The discovery of the new species reported here has necessitated amending the generic diagnosis slightly to accommodate non-cruciform frontal-shield pores. Winston (1984) noted that the apparent zooidal dimorphism was somewhat equivocal owing the varying degrees of zooidal calcification. Here, we confirm zooidal dimorphism, which is pronounced in Calyptooecia conuma n. sp. Both species form hemispherical to mushroom-shaped mounds on different substrata.
description: Published as part of Almeida, Ana Carolina S. & Souza, Facelucia B. C., 2014, Two new species of cheilostome bryozoans from the South Atlantic Ocean, pp. 283-290 in Zootaxa 3753 (3) on page 285, DOI: 10.11646/zootaxa.3753.3.7, http://zenodo.org/record/226369
Additional file 1: Table S1. of Single origin of the Mascarene stick insects: ancient radiation on sunken islands?
Creators: name: Bradler, Sven
name: Cliquennois, Nicolas
name: Buckley, Thomas
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: List of species included in this study with Genbank accession numbers for each gene. Cells with a dash indicate missing data. Taxa in alphabetical order with subfamily assignment following [24] with amendments from [22, 23, 31]. Mascarene taxa in bold. (PDF 167 kb)
Additional file 4: of Horizontal transfer of β-carbonic anhydrase genes from prokaryotes to protozoans, insects, and nematodes
Creators: name: Emameh, Reza Zolfaghari
name: Barker, Harlan
name: Tolvanen, Martti
name: Parkkila, Seppo
name: Hytönen, Vesa
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: 60506 Virology
subject: Computational Biology

description: Genomic location of β-CA gene sequences from protozoan, insect, and nematode species. (PDF 363 kb)
Stenothoe Dana 1852
Creators: name: Marin, Ivan
name: Sinelnikov, Sergey
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Amphipoda
Stenothoidae
Stenothoe

description: Genus Stenothoe Dana, 1852
Diagnosis. (after Krapp-Schickel 2009 with some modifications). Body smooth and shiny, compact, rarely slender. Head narrow, truncated at the front. Coxal plates generally small in size, coxal plate II conceal oral area, with rounded front sides, coxal plate III more or less extended distally and transversely truncated at the end of coxal plate IV. Mandible without palp. Maxilla I with reduced inner plate, with 2-segmented palp. Maxilla II with reduced inner plate, with 2-segmented or fused to outer plate. Maxilliped with very small and narrow inner plates clearly separated into its base, with completely reduced outer plates, palps elongated and 4-articulated, distal articles form a “claw”. Palmar region of gnathopods II with long setose setae on the edge, expanded, palm oblique, carpus shorter than propodus. Gnathopods II large, differing in males and females, meral joint triangularly produced downwards. Peraeopod IV with expanded coxal plates (indication of the family Stenothoidae) sometimes at the lower edge of which may be located short spikes; peraeopod V with rectolinear basis; peraeopods VI–VII with expanded basis and merus. Uropods elongated and setose on the upper surface. Uropod III uniramous. Telson entire, oval or elongated shape, sometimes fitted with teeth or smaller robust setae.
description: Published as part of Marin, Ivan & Sinelnikov, Sergey, 2018, Two new species of amphipod genus Stenothoe Dana, 1852 (Stenothoidae) associated with fouling assemblages from Nhatrang Bay, Vietnam, pp. 57-76 in Zootaxa 4410 (1) on page 58, DOI: 10.11646/zootaxa.4410.1.3, http://zenodo.org/record/1221236
Additional file 1: of Horizontal transfer of β-carbonic anhydrase genes from prokaryotes to protozoans, insects, and nematodes
Creators: name: Emameh, Reza Zolfaghari
name: Barker, Harlan
name: Tolvanen, Martti
name: Parkkila, Seppo
name: Hytönen, Vesa
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Cancer
subject: 60506 Virology
subject: Computational Biology

description: β-CA expressing prokaryotes and their endosymbiotic protozoan, insect, and nematodes hosts. (PDF 301 kb)
Additional file 2: of Horizontal transfer of β-carbonic anhydrase genes from prokaryotes to protozoans, insects, and nematodes
Creators: name: Emameh, Reza Zolfaghari
name: Barker, Harlan
name: Tolvanen, Martti
name: Parkkila, Seppo
name: Hytönen, Vesa
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: 60506 Virology
subject: Computational Biology

description: Prediction of subcellular localization of in vitro-approved prokaryotic endosymbionts and protozoan β-CA protein sequences. (PDF 394 kb)