cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Magnetic and optical anisotropy of Clostridium pasteurianum rubredoxin from optically detected electron paramagnetic resonance
Creators: name: Suter, Dieter
name: Börger, Birgit
Publisher: name: American Institute of Physics
Year: 2001
Subjects: subject: 530

description: The high-spin Fe(III)-center of oxidized rubredoxin from Clostridium pasteurianum shows a complicated, temperature-dependent EPR spectrum. We combine conventional EPR spectroscopy with optically detected EPR (ODEPR) to elucidate the electronic structure of this protein metal center. The ODEPR experiment, which can be considered as coherent Raman scattering or modulated magnetic circular dichroism (MCD), yields spectra that depend on the relative orientation of optical and magnetic dipole moments. A detailed analysis of the spectra shows that they correspond to a zero-field splitting of D = +46.3 GHz and a strong rhombic distortion with E/D = 0.25. In the frozen solution, conformational strain gives rise to variation of the rhombicity, which can be measured quantitatively from the EPR line shape. Analysis of the ODEPR line shapes yields the orientation of the optical anisotropy with respect to the magnetic g-tensor. We compare the results from this study to published results on EPR, optical spectroscopy, and MCD.
Aquaculture Development in East Africa through the lens of two European Funded Horizon Projects, FOODLAND and PrAEctiCe
Creators: name: Davide Sorella
name: Tamás Bardócz
name: F Robinson
name: A Chantzaropoulos
name: M Setti
name: J Hoinkis
name: T Atiye
Publisher: name: Zenodo
Year: 2024
Subjects: agroecology
East Africa
aquaponics
Smallholder Farmers
hydroponics

description: The AQUACULTURE DEVELOPMENTS IN EAST AFRICA THROUGH THE LENS OF TWO EUROPEAN FUNDED HORIZON PROJECTS, FOODLAND AND PRAECTICE abstract was submitted as an oral presentation to the Aquaculture Europe 2023 Event and presented in a session, 'AQUAPONICS & URBAN FARMING', on Thursday, September 21, at 15:00pm by David Sorella.

The oral presentation provides an overview of the aquaculture advancements being implemented in the Food Hubs involved in aquaculture initiatives in FoodLAND Africa, specifically in Kisumu (Kenya), Kajjansi (Uganda) and Morogoro (Tanzania). These developments include recirculating aquaculture systems, novel fish feeds, and production protocols. Furthermore, it highlights how the PrAEctiCe project seeks to advance the development of sustainable agricultural practices that promote the efficient use of water, energy, and nutrients.
Sensitivity of optically excited and detected magnetic resonance
Creators: name: Suter, Dieter
Publisher: name: Elsevier
Year: 1992
Subjects: subject: 530

description: Compared to other forms of spectroscopy, the sensitivity of magnetic resonance experiments is relatively low, so that large numbers of spins are necessary for an experiment. This contrasts with related fields, most notably optical spectroscopy, where it has become possible, in recent years, to obtain spectroscopic information from individual atomic and molecular systems. This article investigates possible means for transferring some of this sensitivity advantage to the domain of magnetic resonance and gives numerical estimates of the expected signal-to-noise ratios, as well as experimental examples.
title: ADCO, Grènetier de Cîteaux : comptes (1499-1503) (11 H 1173), f. 00470
Creators: name: de la Côte-d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: Petot, Frédéric
name: CBMA/CG21/F.PETOT/2019
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Chartes de la Bourgogne du Moyen Âge
subject: comptes
subject: Corpus Burgundiae Medii Aevi
subject: LaMOP

description: Grènetier de Cîteaux : comptes (1499-1503), Archives départementales de la Côte-d'Or, (11 H 1173). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Grènetier de Cîteaux : comptes (1499-1503), Archives départementales de la Côte-d'Or, (11 H 1173), f. 00470, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
L'école à visée inclusive avec ou sans la bibliothèque scolaire ?
Creators: name: Hochart, Hélène Francine Marguerite-Marie
Publisher: name: Zenodo
Year: 2022

description: Dans le cadre de l'année de pré-requis 2021-2022, en amont des deux années de master Science de l'Information, j'ai été amenée à rédiger un dossier autour d'une question liée à une expérience de terrain en bibliothèque. 

L'actualité se portait sur le concept 360°, autrement dit l'école à visée inclusive, au sein de laquelle les bibliothèques scolaires n'étaient pas identifiées comme parties prenantes.
Spectral spin diffusion in the presence of an extraneous dipolar reservoir
Creators: name: Suter, Dieter
name: Ernst, R. R.
Publisher: name: The American Physical Society
Year: 1982
Subjects: subject: 530

description: An explanation is presented for the observed inverse quadratic dependence of the spectral spin-diffusion rate constant on the frequency difference of the two involved spin species in the presence of a large extraneous dipolar reservoir. The result applies to spin diffusion in the laboratory frame and to cross polarization in a rotating frame.
Tabla 2.Datos del emisor
Creators: name: Vizcaino, Arantxa
name: Pulido, Paloma Contreras
name: Franco, María Dolores Guzmán
Publisher: name: figshare
Year: 2019
Subjects: subject: 200101 Communication Studies
subject: FOS: Media and communications

description: Tabla 2. Datos del emisor
Displacement of a laser beam by a precessing magnetic dipole
Creators: name: Suter, Dieter
name: Blasberg, Tilo
Publisher: name: The American Physical Society
Year: 1992
Subjects: subject: 530

description: Exchange of angular momentum between photons and atoms cannot only cause optical pumping, but also a lateral displacement of a laser beam traveling through a homogeneous atomic vapor. We present experimental data from the ground state of atomic sodium demonstrating this effect.
Scalable quantum computer with superconducting circuits in the ultrastrong coupling regime
Creators: name: Stassi, Roberto
name: Cirio, Mauro
name: Nori, Franco
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: So far, superconducting quantum computers have certain constraints on qubit connectivity, such as nearest-neighbor couplings. To overcome this limitation, we propose a scalable architecture to simultaneously connect several pairs of distant qubits via a dispersively coupled quantum bus. The building-block of the bus is composed of orthogonal coplanar waveguide resonators connected through ancillary flux qubits working in the ultrastrong coupling regime. This regime activates virtual processes that boost the effective qubit-qubit interaction, which results in quantum gates on the nanosecond timescale. The interaction is switchable and preserves the coherence of the qubits.
Effects of Strong Correlation and Randomness in the Vicinity of the Mott Transition in the Quasi-One-Dimensional Hubbard Model
Creators: name: Fujimoto, Satoshi
Publisher: name: arXiv
Year: 1999
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We study the strong correlation effects in the vicinity of the Mott metal-insulator transition using coupled clean or disordered Hubbard chains with a infinitely large coordinate number $D_{\perp}\to\infty$ in the direction perpendicular to the chains and with a long-range transverse hopping. Strong electron correlation effects are treated partially non-perturbatively with the use of the exact results for the 1D Hubbard model. In the case of clean systems, the thermodynamic and transport quantities which characterize the Mott transition from the Fermi liquid state, such as the specific heat coefficient, the Drude weight, and the compressibility, are obtained as functions of hole-doping $δ=1-n$ ($n$, electron density) by the systematic expansion in terms of the inverse of the transverse hopping range $l_{\perp}$. We find that the $δ$-dependence of these quantities shows non-universal behaviors with exponents depending on the strength of electron-electron interaction. In the presence of disorder, it is shown that the frequency-dependence of the dynamical conductivity obeys the Mott's law, implying the possibility of {\it Mott glass state} for $δ\to 0$, provided that there exists a finite range interaction.
description: 10 pages, 4 figures. Title is changed. The discussion about effects of disorder is added. To appear in J. Phys. Soc. Jpn
Polarization oscillations of coupled laser beams in an optically pumped atomic vapour
Creators: name: Suter, Dieter
Publisher: name: Elsevier Science
Year: 1993
Subjects: subject: 530

description: Spontaneous polarization oscillations are observed to develop in two laser beams interacting in an atomic vapour when their polarizations are locked to each other. In a theoretical analysis of the situation, we show that these oscillations are due to ground- state magnetization undergoing Larmor precession. The gain of the feedback loop that locks the two polarizations acts as a control parameter that can cause a phase-transition of the combined system (atoms and laser beams) into a stable limit cycle.
title: ADCO, Cart. 186 (11 H 71), f. 0039r
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, t. II (XVe siècle), tome II, Archives départementales de la Côte-d'Or, C
art. 186 (11 H 71). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, t. II (XVe siècle), tome II, Archives départementales de la
 Côte-d'Or, Cart. 186 (11 H 71), f. 0039r, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-
project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Additional file 5 of AFLAP: assembly-free linkage analysis pipeline using k-mers from genome sequencing data
Creators: name: Fletcher, Kyle
name: Zhang, Lin
name: Gil, Juliana
name: Han, Rongkui
name: Cavanaugh, Keri
name: Michelmore, Richard
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 5. Review history.
Hydrodynamic Models for Heavy-Ion Collisions, and beyond
Creators: name: Dumitru, A.
name: Brachmann, J.
name: Fraga, E. S.
name: Greiner, W.
name: Jackson, A. D.
name: Lenaghan, J. T.
name: Scavenius, O.
name: Stöcker, H.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Nuclear Theory (nucl-th)
subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: A generic property of a first-order phase transition in equilibrium, and in the limit of large entropy per unit of conserved charge, is the smallness of the isentropic speed of sound in the ``mixed phase''. A specific prediction is that this should lead to a non-isotropic momentum distribution of nucleons in the reaction plane (for energies around 40 AGeV in our model calculation). On the other hand, we show that from present effective theories for low-energy QCD one does not expect the thermal transition rate between various states of the effective potential to be much larger than the expansion rate, questioning the applicability of the idealized Maxwell/Gibbs construction. Experimental data could soon provide essential information on the dynamics of the phase transition.
description: 10 Pages, 4 Figures. Presented at 241st WE-Heraeus Seminar: Symposium on Fundamental Issues in Elementary Matter: In Honor and Memory of Michael Danos, Bad Honnef, Germany, 25-29 Sep 2000
International Trade, Economic Growth and Inequality
Creators: name: YANG LI
Publisher: name: Monash University
Year: 2019
Subjects: subject: Economics
subject: 140210 International Economics and International Finance
subject: FOS: Economics and business

description: This thesis explains the effects of transport costs on trade booms over the last three centuries. It suggests that transport technology plays a significant role in reducing transport costs and increasing international trade. It further explains how trade promotes economic growth through education, savings and innovations. It also suggests that trade reduces overall personal income inequality.
Effect of different sodium halides on the self-association of tertiary butanol in water
Creators: name: Suter, Dieter
name: Jeufack, Hervé Momo
Publisher: name: American Institute of Physics
Year: 2007
Subjects: subject: 530

description: The molecular self-association of hydrophobic substances is an important process for many biological systems. Here, the authors study the effect of salt on the molecular self-association of t-butanol in water solution, using NMR techniques. They compare the effects of different sodium halides (NaCl, NaBr, and NaI) as a function of their concentration.
Transport fluctuations in integrable models out of equilibrium
Creators: name: Myers, Jason
name: Bhaseen, M. J.
name: Harris, Rosemary J.
name: Doyon, Benjamin
Publisher: name: arXiv
Year: 2018
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: We propose exact results for the full counting statistics, or the scaled cumulant generating function, pertaining to the transfer of arbitrary conserved quantities across an interface in homogeneous integrable models out of equilibrium. We do this by combining insights from generalised hydrodynamics with a theory of large deviations in ballistic transport. The results are applicable to a wide variety of physical systems, including the Lieb-Liniger gas and the Heisenberg chain. We confirm the predictions in non-equilibrium steady states obtained by the partitioning protocol, by comparing with Monte Carlo simulations of this protocol in the classical hard rod gas. We verify numerically that the exact results obey the correct non-equilibrium fluctuation relations with the appropriate initial conditions.
description: v1: 7 + 8 pages, 6 figures. v2: 32 pages, format and discussion improved. v3: typo in the formula for c4 corrected. v4: 33 pages, discussion further improved
Integer filling metal insulator transitions in the degenerate Hubbard model
Creators: name: Rozenberg, Marcelo J.
Publisher: name: arXiv
Year: 1996
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We obtain exact numerical solutions of the degenerate Hubbard model in the limit of large dimensions (or large lattice connectivity). Successive Mott-Hubbard metal insulator transitions at integer fillings occur at intermediate values of the interaction and low enough temperature in the paramagnetic phase. The results are relevant for transition metal oxides with partially filled narrow degenerate bands.
description: 4 pages + 4 figures (in 5 ps-files), revtex
CP Violation in Neutrinoless Double Beta Decay and Neutrino Oscillation
Creators: name: Fukuyama, T.
name: Matsuda, K.
name: Nishiura, H.
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Taking account of possible CP violation, we discuss about the constraints on the lepton mixing angles from the neutrinoless double beta decay and from the neutrino oscillation for the three flavour Majorana neutrinos. From the CHORUS oscillation experiment, combined with the data of neutrinoless double beta decay, we show that the large angle solution of (θ_{23}) is improbable if the neutrino mass (m_3) of the third generation is a candidate of hot dark matters.
description: 14pp, REVTeX, 6 Figures
Tabla 1. Muestra completa
Creators: name: Vizcaino, Arantxa
name: Pulido, Paloma Contreras
name: Franco, María Dolores Guzmán
Publisher: name: figshare
Year: 2019
Subjects: subject: 200101 Communication Studies
subject: FOS: Media and communications

description: Tabla 1. Muestra completa
Everclear: Student Perspectives On Campus Sexual Assault
Creators: name: Jerwick, Sophie
Publisher: name: The University of Texas at Austin
Year: 2019
Subjects: Health
Public Health
Gender Studies
Higher Education
Policy

description: We know that campus sexual assault is a serious issue. The #MeToo movement, Baylor’s scandal(s), and the Columbia University student carrying the mattress she was raped on through campus, told us that. Current studies of campus sexual assault and rape are solely quantitative or hyper-specific in their focus on a small part of the student population. This study aims to describe campus sexual assault at the University of Texas at Austin from the student perspective. Conducting semi-structured, in-depth interviews with student participants, coupled with auto-ethnographic information from a student researcher produced a peer-observational study that asked honest, well-informed questions about student life in order to understand why campus sexual assault is an epidemic and what we can do to mitigate it. Students and adult administrators are not communicating, as the rate of sexual assault is high, and the rate of reporting to UT is rock-bottom-low. This study aims to mend that divide. We will discuss students’ perspectives on party culture, how they define consent, and how these social standards influence campus sexual assault. Students’ experiences of sexual assault will be analyzed, drawing connections between these stories and the environment where they took place. The aftermath of assault, including sexual health care, mental health, and trauma will be examined. We will explore what keeps the vast majority students from reporting their assault or telling anyone about it. Finally, I will give my conclusions and recommendations, outlining what all people, administrators, policymakers, students of all ages, and parents can do to affect change.
Studying the collective motions of the adenosine A2A receptor as a result of ligand binding using principal component analysis
Creators: name: Marlet Martínez-Archundia
name: Correa-Basurto, José
name: Montaño, Sarita
name: Rosas-Trigueros, Jorge L.
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Marine Biology
subject: Cancer
subject: Computational Biology

description: Adenosine receptors (ARs) belong to family A of GPCRs that are involved in many diseases, including cerebral and cardiac ischemic diseases, immune and inflammatory disorders, etc. Thus, they represent important therapeutic targets to treat these conditions. Computational techniques such as molecular dynamics (MD) simulations permit researchers to obtain structural information about these proteins and principal component analysis (PCA) allows for the identification of collective motions. There are available structures for the active form (3QAK) and an inactive form (3EML) of A2AR which permit us to gain insight about their activation/inactivation mechanism. In this work we have proposed an inverse strategy using MD simulations where the active form was coupled to the antagonist caffeine and the inactive form was coupled with adenosine agonist. Moreover, we have included four reported thermostabilizing mutations in the inactive form to study A2AR structural differences under different conditions. Some observations stand out from the PCA studies. For instance, the apo structures showed remarkable similarities, and the principal components were rearranged in a ligand-dependent manner. Additionally, the active conformation was less stable compared to the inactive one. Some principal components inverted their direction in the presence of a ligand, and comparison of the principal components PCs between 3EML and 3EML_ADN showed that adenosine induced major changes in the structure of A2AR. Rearrangement of principal components precedes and drives conformational changes that occur after ligand binding. Knowledge about these conformational changes provides important insights about the activity of A2AR.
title: 02_0182
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
Phthiraptera Haeckel 1896
Creators: name: Gustafsson, Daniel R.
name: Zou, Fasheng
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Phthiraptera

description: PHTHIRAPTERA Haeckel, 1896  Phthiraptera Haeckel 1896: 703.
description: Published as part of Gustafsson, Daniel R. & Zou, Fasheng, 2023, Species of Reticulipeurus Kéler, 1958 (Phthiraptera, Ischnocera, Oxylipeurus- complex) parasitic on species of Arborophila, with description of a new subgenus and three new species, pp. 496-520 in Zootaxa 5284 (3) on page 497, DOI: 10.11646/zootaxa.5284.3.3, http://zenodo.org/record/7929559
Tabla 3.Datos de comentarios
Creators: name: Vizcaino, Arantxa
name: Guzmán-Franco, María Dolores
name: Pulido, Paloma Contreras
Publisher: name: figshare
Year: 2019
Subjects: subject: 200101 Communication Studies
subject: FOS: Media and communications
subject: 200205 Culture, Gender, Sexuality
subject: FOS: Other humanities

description: Tabla de recopilación de datos.
title: ADCO, Ordre cistercien : comptes (1499-1515) (11 H 1162), f. 00062
Creators: name: de la Côte-d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2019
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: comptes
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Ordre cistercien : comptes (1499-1515), Archives départementales de la Côte-d'Or, (11 H 1162). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Ordre cistercien : comptes (1499-1515), Archives départementales de la Côte-d'Or, (11 H 1162), f. 00062, in Projet CBMA - Corpus Burgundiae Medii Aevi \[Ressource en ligne\], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Additional file 2 of Adapting and validating the log quadratic model to derive under-five age- and cause-specific mortality (U5ACSM): a preliminary analysis
Creators: name: Perin, Jamie
name: Chu, Yue
name: Villaviciencio, Francisco
name: Schumacher, Austin
name: McCormick, Tyler
name: Guillot, Michel
name: Liu, Li
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Computational Biology

description: Additional file 2. Estimated U5ACSM for pneumonia-specific mortality in the China MCHSS.
Geometric Phase in Quantum Billiards with a Pointlike Scatterer
Creators: name: Cheon, Taksu
name: Shigehara, Takaomi
Publisher: name: arXiv
Year: 1995
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Chaotic Dynamics (nlin.CD)
subject: Nuclear Theory (nucl-th)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We examine the quantum energy levels of rectangular billiards with a pointlike scatterer in one and two dimensions. By varying the location and the strength of the scatterer, we systematically find diabolical degeneracies among various levels. The associated Berry phase is illustrated, and the existence of localized wave functions is pointed out. In one dimension, even the ground state is shown to display the sign reversal with a mechanism to circumvent the Sturm-Liouville theorem.
description: 9 pages, RevTex file, 6 postscript figures (gz compressed), uuencoded
Additional file 2 of A pan-cancer analysis of molecular characteristics and oncogenic role of gasdermins
Creators: name: Mu, Mingchao
name: Yu, Qiaoling
name: Zhang, Qin
name: Guo, Jing
name: Wang, Xingjie
name: Sun, Xuejun
name: Yu, Junhui
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2: Figure S2. The protein domain structure and activating and inhibitory cleavage sites of GSDM family genes. All GSDM genes but PJVK have a pore-forming Gasdermin domain and a regulatory C-terminal domain. Cleavage at the sites marked by a red rectangle is considered to be prerequisite for activation, while cleavage at the sites marked by a blue rectangle generates nontoxic N-terminal moieties.
Estimating investments in knowledge and planning activities for adaptation in developing countries: an empirical approach
Creators: name: Costa, Luís Filipe Carvalho Da
name: Kropp, Jürgen Peter
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Marine Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Costs of adaptation in the developing world have been mostly equated to those of climate proofing infrastructure under the assumption of unconstrained knowledge and planning capacities. To correct this, we introduce a cost-scaling methodology estimating sectoral investments to enhance the knowledge and planning capacities of countries based on an empirical collection of 385 climate-related projects. We estimate that circa 9.2 billion USD are required for financing knowledge and planning activities in developing countries in 2015. The agricultural and water sectors demand the higher investments – 3.8 and 3.5 billion USD, respectively. Average investments between 2015 and 2050 are projected at 7 billion USD per year – the largest fraction of which (4 billion) in Africa. Investments in this study were found to constitute approximately 40%, 20–60% and 5–15% of previous cost estimates to climate-proof infrastructure in the agricultural, water, and coastal sectors, respectively. The effort to finance the knowledge and planning capacities in developing countries is therefore not marginal relative to the costs of adapting infrastructure. The findings underline the potential of using empirical collections of climate-related projects for adaptation cost assessments as complementary to process and economic models.
Kinetic equation for liquids with a multistep potential of interaction. II: Calculation of transport coefficients
Creators: name: Tokarchuk, M. V.
name: Omelyan, I. P.
name: Kobryn, A. E.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We consider a new kinetic equation for systems with a multistep potential of interaction proposed by us recently in Physica A 234 (1996) 89. This potential consists of the hard sphere part and a system of attractive and repulsive walls. Such a model is a generalization of many previous semi-phenomenological kinetic theories of dense gases and liquids. In this article a normal solution to the new kinetic equation has been obtained, integral conservation laws in the first order on gradients of hydrodynamic parameters have been derived as well. The expressions for transport coefficients are calculated for the case of stationary process. We also consider limiting cases for this kinetic equation. For specific parameters of model interaction potential in shape of the multistep function, the obtained results rearrange to those of previous kinetic theories by means of the standard Chapman-Enskog method. In view of this, new theory can be considered as a generalized one which in some specific cases arrives at the results of previous ones and in such a way displays the connection of these theories between themselves. At the end of this article we present results of numerical computation of transport coefficients for Argon along curve of saturation and their comparison with experimental data available and MD simulations.
description: 31 LaTeX2e pages, 2 tables, 4 EPS-figures, Elsevier format
Selecting Democracy Indicators for the modern University
Creators: name: Papanikolaou, Vaia
name: Roussakis, Yiannis
name: Tzionas, Panagiotis
Publisher: name: Academia
Year: 2021
Subjects: Democratic indicators, university, Text Network analysis

description: The purpose of the proposed research is the application of suitable indicators, which measure the state of democracy, to the university field. Initially, an in-depth analysis of the features presented in six international organizations measuring democracy worldwide was performed. This revealed a sizeable set of significant and complementary indicators that constructed a conceptual framework for democratic institutions. Then, a model of the ‘democratic’ university was established with respect to its mission, operations and interactions, comprising a set of democratic characteristics. Interviews with academics from several European countries helped select those primary democracy indicators that can be best associated with the university characteristics. Interviews were analyzed using a Text Network Analysis algorithm, which represents texts as network graphs. Results show that monitoring these associations can reveal discrepancies and flaws that may degrade the university’s democratic operation and, also, helps to resolve conflicting demands when interacting with societal actors and the state. The size and variety of the examined datasets overcomes data bias, and the novelty of our approach lies in the fact that the graphical representations of the texts does not impose external semantic structures, thus avoiding subjectivity. This can have significant implications in assisting the complex policy formation processes within the university.
description: Academia, No 23-24 (2021)
On the correlation between the local dark matter and stellar velocities
Creators: name: Bozorgnia, Nassim
name: Fattahi, Azadeh
name: Cerdeno, David G.
name: Frenk, Carlos S.
name: Gómez, Facundo A.
name: Grand, Robert J. J.
name: Marinacci, Federico
name: Pakmor, Rüdiger
Publisher: name: arXiv
Year: 2018
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The dark matter velocity distribution in the Solar neighbourhood is an important astrophysical input which enters in the predicted event rate of dark matter direct detection experiments. It has been recently suggested that the local dark matter velocity distribution can be inferred from that of old or metal-poor stars in the Milky Way. We investigate this potential relation using six high resolution magneto-hydrodynamical simulations of Milky Way-like galaxies of the Auriga project. We do not find any correlation between the velocity distributions of dark matter and old stars in the Solar neighbourhood. Likewise, there are no strong correlations between the local velocity distributions of dark matter and metal-poor stars selected by applying reasonable cuts on metallicity. In some simulated galaxies, extremely metal-poor stars have a velocity distribution that is statistically consistent with that of the dark matter, but the sample of such stars is so small that we cannot draw any strong conclusions.
description: 21 pages, 11 figures, 4 tables; added section 5 and appendix B; JCAP accepted version
Model independent determination of the shape function for inclusive B decays and of the structure functions in DIS
Creators: name: Aglietti, U.
name: Ciuchini, M.
name: Corbo', G.
name: Franco, E.
name: Martinelli, G.
name: Silvestrini, L.
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We present a method to compute, by numerical simulations of lattice QCD, the inclusive semileptonic differential decay rates of heavy hadrons and the structure functions which occur in deep inelastic scattering. The method is based on first principles and does not require any model assumption. It allows the prediction of the differential rate in B semileptonic decays for values of the recoiling hadronic mass W ~ sqrt(M_B Lambda_QCD), which is in the relevant region to extract |V_ub| from the end-point of the lepton spectrum in inclusive decays.
description: 16 pages, LaTeX file
Effect of obstacle strength and spacing on the slope of Haasen plot
Creators: name: Sumeet Mishra
name: Vikrant Kumar Beura
name: Singh, Amit
name: Manasij Yadava
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy
subject: Computational Biology

description: The rate sensitivity of multiple obstacle aluminium alloy system was measured using the stress relaxation method. A discrepancy was observed between the slope of the Haasen plot (rate sensitivity of dislocation–dislocation interaction) in pure metals and in alloys strengthened by multiple obstacles. Considering a simplifying assumption of the constant obstacle force–distance profile, it is suggested that slope of the Haasen plot is governed by glide dislocations’ length taking part in a thermally activated event. The relative strength and spacing of obstacles (forest dislocations, solutes and precipitates) is proposed to affect the thermally activated dislocation length, which in turn manifests as the difference in slope of the Haasen plot.
Growth, Percolation, and Correlations in Disordered Fiber Networks
Creators: name: Provatas, N.
name: Haataja, M.
name: Seppälä, E.
name: Majaniemi, S.
name: Åström, J.
name: Alava, M.
name: Ala-Nissila, T.
Publisher: name: arXiv
Year: 1996
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: This paper studies growth, percolation, and correlations in disordered fiber networks. We start by introducing a 2D continuum deposition model with effective fiber-fiber interactions represented by a parameter $p$ which controls the degree of clustering. For $p=1$, the deposited network is uniformly random, while for $p=0$ only a single connected cluster can grow. For $p=0$, we first derive the growth law for the average size of the cluster as well as a formula for its mass density profile. For $p>0$, we carry out extensive simulations on fibers, and also needles and disks to study the dependence of the percolation threshold on $p$. We also derive a mean-field theory for the threshold near $p=0$ and $p=1$ and find good qualitative agreement with the simulations. The fiber networks produced by the model display nontrivial density correlations for $p<1$. We study these by deriving an approximate expression for the pair distribution function of the model that reduces to the exactly known case of a uniformly random network. We also show that the two-point mass density correlation function of the model has a nontrivial form, and discuss our results in view of recent experimental data on mass density correlations in paper sheets.
description: 30 pages, 24 PostScript figures, to be published in J. Stat. Phys. also available at http://www.physics.helsinki.fi/tft/tft_preprints.html
ASXL gain-of-function truncation mutants: defective and dysregulated forms of a natural ribosomal frameshifting product?
Creators: name: Dinan, Adam
name: Atkins, John F
name: Firth, Andrew
Publisher: name: Apollo - University of Cambridge Repository
Year: 2017
Subjects: Animals
Vertebrates
Transcription Factors
Codon
Sequence Alignment
Frameshifting, Ribosomal
Amino Acid Sequence
Base Sequence
Conserved Sequence
Open Reading Frames

description: Background: Programmed ribosomal frameshifting (PRF) is a gene expression mechanism which enables the translation of two N-terminally coincident, C-terminally distinct protein products from a single mRNA. Many viruses utilize PRF to control or regulate gene expression, but very few phylogenetically conserved examples are known in vertebrate genes. Additional sex combs-like (ASXL) genes 1 and 2 encode important epigenetic and transcriptional regulatory proteins that control the expression of homeotic genes during key developmental stages. Here we describe an ~150-codon overlapping ORF (termed TF) in ASXL1 and ASXL2 that, with few exceptions, is conserved throughout vertebrates. Results: Conservation of the TF ORF, strong suppression of synonymous site variation in the overlap region, and the completely conserved presence of an EH[N/S]Y motif (a known binding site for Host Cell Factor-1, HCF-1, an epigenetic regulatory factor), all indicate that TF is a protein-coding sequence. A highly conserved UCC_UUU_CGU sequence (identical to the known site of +1 ribosomal frameshifting for influenza virus PA-X expression) occurs at the 5′ end of the region of enhanced synonymous site conservation in ASXL1. Similarly, a highly conserved RG_GUC_UCU sequence (identical to a known site of −2 ribosomal frameshifting for arterivirus nsp2TF expression) occurs at the 5′ end of the region of enhanced synonymous site conservation in ASXL2. Conclusions: Due to a lack of appropriate splice forms, or initiation sites, the most plausible mechanism for translation of the ASXL1 and 2 TF regions is ribosomal frameshifting, resulting in a transframe fusion of the N-terminal half of ASXL1 or 2 to the TF product, termed ASXL-TF. Truncation or frameshift mutants of ASXL are linked to myeloid malignancies and genetic diseases, such as Bohring-Opitz syndrome, likely at least in part as a result of gain-of-function or dominant-negative effects. Our hypothesis now indicates that these disease-associated mutant forms represent overexpressed defective versions of ASXL-TF.
Additional file 4 of Hsa_circ_0020850 promotes the malignant behaviors of lung adenocarcinoma by regulating miR-326/BECN1 axis
Creators: name: Li, Xiaoju
name: Su, Shengtian
name: Ye, Dan
name: Yu, Zhigao
name: Lu, Wenjing
name: Liu, Liang
Publisher: name: figshare
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Cancer
subject: Statistics
subject: FOS: Mathematics

description: Additional file 4.
Project Production Files for Collection 37
Creators: name: WhatEvery1Says (WE1S) Project
Publisher: name: Zenodo
Year: 2021
Subjects: subject: Humanities
subject: FOS: Humanities
subject: Journalism

description: This is an archive of the WE1S project folder from which Collection 37 is derived. WE1S "projects" are folders that contain all notebooks, publicly available data, topic models and other analyses, and visualizations associated with the project. WE1S "collections" contain just the data and visualizations produced in project folders and may contain code updated for public presentation. This project folder contains a snapshot of the work that had been done on the project at the time of archiving. Some code may not be the latest code, and there may be examples of test code that was run after the main workflow. WE1S makes available only "non-consumptive use" word frequency, topic model, and other datasets along with their visualizations. Datasets cannot be used to access, read, or reconstruct the original texts. Where such content cannot be published because of intellectual property restrictions, it has been deleted from project data files. However, tables of features (tokens and annotations) are retained. A record of our published data and visualizations for Collection 37 is available at https://zenodo.org/record/4958256.
description: The archive file can be extracted by a variety of third-party tools. However, for convenience, we provide a Python script to perform this action. To use it, cd to the folder where you have downloaded the script and run python extract.py path/to/archive/file. Run python extract.py --help for further options.
Scaling and universality in binary fragmenting with inhibition
Creators: name: Botet, Robert
name: Ploszajczak, Marek
Publisher: name: arXiv
Year: 1995
Subjects: subject: Adaptation and Self-Organizing Systems (nlin.AO)
subject: FOS: Physical sciences

description: We investigate a new model of binary fragmentation with inhibition, driven by the white noise. In a broad range of fragmentation probabilities, the power-law spatiotemporal correlations are found to arise due to self-organized criticality (SOC). We find in the SOC phase a non-trivial power spectrum of the temporal sequence of the fragmentation events. The $1/f$~ behaviour is recovered in the irreversible, near-equilibrium part of this phase.
description: 14 pages, latex file, figures available upon request; Physica A, in print
Additional file 2 of Genome-wide localization of histone variants in Toxoplasma gondii implicates variant exchange in stage-specific gene expression
Creators: name: Nardelli, Sheila C.
name: Silmon de Monerri, Natalie C.
name: Vanagas, Laura
name: Wang, Xiaonan
name: Tampaki, Zoi
name: Sullivan, William J.
name: Angel, Sergio O.
name: Kim, Kami
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2. Correlations between ChIP-chip and ChIP-seq datasets. A. Genome browser view of ChIP-chip ratios over various genes in T. gondii. ChIP-chip outputs plot the scaled log-transformed ratio of experimental IP to input. Genes are identical to those displayed in Fig. 2A. B. Plot showing number of peaks detected using ChIP-seq and ChIP-chip platforms. The mean number of peaks detected in replicates are shown. C. Correlations between all peaks detected by ChIP-seq or ChIP-chip were calculated from peaks called with Homer (H2AX, H3.3 ChIP-seq), NimbleScan (all ChIP-chip) or MACS (all the others). Data was analyzed and plotted using the R package Diffbind. Color bar above the heat map indicates factor (histone variant – see heat map labels), technique (ChIP-seq – blue, ChIP-chip - pink), and replicate (purple = 1; pink = 2; blue = 3). The heat map color key is shown in the upper left with darker blue indicating the strongest correlations. As shown in the heat map, the H2A.Z, H2B.Z and H3K4m3 peaks from ChIP-chip and ChIP-seq showed the strongest correlations. Peaks for each variant or histone modification are the intersection of peaks from each biological replicate (ChIP-seq and ChIP-chip). D. Plot showing lengths of peaks from ChIP-seq and ChIP-chip platforms. Data from replicates were combined into one sample.
Asymptotic stability of the multidimensional wave equation coupled with classes of positive-real impedance boundary conditions
Creators: name: Monteghetti, Florian
name: Haine, Ghislain
name: Matignon, Denis
Publisher: name: arXiv
Year: 2018
Subjects: subject: Dynamical Systems (math.DS)
subject: Analysis of PDEs (math.AP)
subject: FOS: Mathematics

description: This paper proves the asymptotic stability of the multidimensional wave equation posed on a bounded open Lipschitz set, coupled with various classes of positive-real impedance boundary conditions, chosen for their physical relevance: time-delayed, standard diffusive (which includes the Riemann-Liouville fractional integral) and extended diffusive (which includes the Caputo fractional derivative). The method of proof consists in formulating an abstract Cauchy problem on an extended state space using a dissipative realization of the impedance operator, be it finite or infinite-dimensional. The asymptotic stability of the corresponding strongly continuous semigroup is then obtained by verifying the sufficient spectral conditions derived by Arendt and Batty (Trans. Amer. Math. Soc., 306 (1988)) as well as Lyubich and Vũ (Studia Math., 88 (1988)).