cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 2: Table S1. of Evolutionary and functional analysis of mulberry type III polyketide synthases
Creators: name: Li, Han
name: Jiubo Liang
name: Chen, Hu
name: Guangyu Ding
name: Ma, Bi
name: Ningjia He
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology
subject: Computational Biology

description: Type III polyketide synthase genes in the M. notabilis genome. Genes have been named based on scaffold locations. ORF length: open reading frame length confirmed by clone analysis. *: genes without expression data. Table S2: Estimation of the mean Ks values for the genes flanking mulberry type III PKS genes. The mean Ks value was calculated for each homologous pair of protein-coding genes between genomic fragments containing type III PKS genes if microsynteny was detected. Table S3: Parameter estimates of codon-substitution evolutionary models for three MnCHS-like genes with undetectable expression. The likelihood ratio tests are as follows: Branch model, one ratio model 0 vs two ratio model 2; Clade model C, M2a_rel vs CmC; Branch site model, model A null (ω is fixed as 1) vs model A, ω = d N /d S . b = background; f = foreground; o=other; p0, p1, and p2 = proportion of sites with d N /d S ratios = ω0, ω1, and ω2, respectively; lnL = ln of the likelihood; P-value = P values of the likelihood ratio tests. Table S4: Type I and type II functional divergence between MnSTS and MnCHS families as well as in MnSTS subfamilies. Table S5: Primers used for cloning mulberry type III PKS and 4CL genes. Four genes labelled with asterisk, including MnSTS2, MnSTS3, MnSTS8 and MnSTS9 shared the forward (from initiation codon ‘ATG’) and reverse (end with stop codon ‘TAG’) primers, while other primers matching to variable regions have been used to distinguish them. Table S6: Sequences of primers used for quantitative reverse transcription PCR. (DOCX 36 kb)
Neoconocephalus Karny 1907
Creators: name: Yong, Sheyla
name: Perez-Gelabert, Daniel E.
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Orthoptera
Tettigoniidae
Neoconocephalus

description: Genus Neoconocephalus Karny, 1907
Neoconocephalus Karny, 1907: 22.
Type species: Conocephalus subulatus Bolívar, 1881; by original designation.
description: Published as part of Yong, Sheyla & Perez-Gelabert, Daniel E., 2014, Grasshoppers, Crickets and Katydids (Insecta: Orthoptera) of Cuba: an annotated checklist, pp. 401-438 in Zootaxa 3827 (4) on page 429, DOI: 10.11646/zootaxa.3827.4.1, http://zenodo.org/record/228581
Fluorescent single-molecule STM probe
Creators: name: Friedrich, Niklas
name: Roslawska, Anna
name: Arrieta, Xabier
name: Romeo, Michelangelo
name: Moal, Eric Le
name: Scheurer, Fabrice
name: Aizpurua, Javier
name: Borisov, Andrei G.
name: Neuman, Tomas
name: Schull, Guillaume
Publisher: name: arXiv
Year: 2023
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The plasmonic tip of a scanning tunnelling microscope (STM) is functionalized with a single fluorescent molecule and is scanned on a plasmonic substrate. The tunneling current flowing through the tip-molecule-substrate junction generates a narrow-line emission of light corresponding to the fluorescence of the negatively charged molecule suspended at the apex of the tip, i.e., the emission of the excited molecular anion (trion). The fluorescence of this molecular probe is recorded for tip-substrate nanocavities featuring different plasmonic resonances, for different tip-substrate distances and applied bias voltages, and on different substrates. We demonstrate that the width of the emission peak can be used as a probe of the trion-plasmon coupling strength and that the energy of the emitted photons is governed by the molecule interactions with its electrostatic environment. Additionally, we theoretically elucidate why the direct contact of the suspended molecule with the metallic tip does not totally quench the radiative emission of the molecule.
description: 9 pages in the main manuscript, including 4 figures, 11 pages in the supporting info, including 5 figures and 1 table
End-to-end Reinforcement Learning for Time-Optimal Quadcopter Flight
Creators: name: Ferede, Robin
name: De Wagter, Christophe
name: Izzo, Dario
name: de Croon, Guido C. H. E.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Robotics (cs.RO)
subject: FOS: Computer and information sciences

description: Aggressive time-optimal control of quadcopters poses a significant challenge in the field of robotics. The state-of-the-art approach leverages reinforcement learning (RL) to train optimal neural policies. However, a critical hurdle is the sim-to-real gap, often addressed by employing a robust inner loop controller -an abstraction that, in theory, constrains the optimality of the trained controller, necessitating margins to counter potential disturbances. In contrast, our novel approach introduces high-speed quadcopter control using end-to-end RL (E2E) that gives direct motor commands. To bridge the reality gap, we incorporate a learned residual model and an adaptive method that can compensate for modeling errors in thrust and moments. We compare our E2E approach against a state-of-the-art network that commands thrust and body rates to an INDI inner loop controller, both in simulated and real-world flight. E2E showcases a significant 1.39-second advantage in simulation and a 0.17-second edge in real-world testing, highlighting end-to-end reinforcement learning's potential. The performance drop observed from simulation to reality shows potential for further improvement, including refining strategies to address the reality gap or exploring offline reinforcement learning with real flight data.
description: 6 pages, 6 figures, 1 table
Additional file 2: Table S1. of Combined strategies for improving expression of Citrobacter amalonaticus phytase in Pichia pastoris
Creators: name: Li, Cheng
name: Lin, Ying
name: Xueyun Zheng
name: Pang, Nuo
name: Xihao Liao
name: Xiaoxiao Liu
name: Yuanyuan Huang
name: Shuli Liang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology

description: Primers, vectors and strains used in this study. (PDF 254 kb)
Neoconocephalus aduncus Scudder 1878
Creators: name: Yong, Sheyla
name: Perez-Gelabert, Daniel E.
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Orthoptera
Tettigoniidae
Neoconocephalus
Neoconocephalus aduncus

description: Neoconocephalus aduncus (Scudder, 1878)
Conocephalus aduncus Scudder, 1878: 87; Bolívar, 1888: 149; Gundlach, 1891: 357. Conocephaloides aduncus: Rehn, 1909: 212. Neoconocephalus aduncus: Zayas, 1976: 63, fig. 55; T. Walker and Greenfield 1983: 385, figs. 22, 36.
Holotype male, from La Fermina, Pinar del Rio prov., Cuba. [ANSP].
Distribution. Cuba.
description: Published as part of Yong, Sheyla & Perez-Gelabert, Daniel E., 2014, Grasshoppers, Crickets and Katydids (Insecta: Orthoptera) of Cuba: an annotated checklist, pp. 401-438 in Zootaxa 3827 (4) on page 429, DOI: 10.11646/zootaxa.3827.4.1, http://zenodo.org/record/228581
User-Aware Prefix-Tuning is a Good Learner for Personalized Image Captioning
Creators: name: Wang, Xuan
name: Wang, Guanhong
name: Chai, Wenhao
name: Zhou, Jiayu
name: Wang, Gaoang
Publisher: name: arXiv
Year: 2023
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: Image captioning bridges the gap between vision and language by automatically generating natural language descriptions for images. Traditional image captioning methods often overlook the preferences and characteristics of users. Personalized image captioning solves this problem by incorporating user prior knowledge into the model, such as writing styles and preferred vocabularies. Most existing methods emphasize the user context fusion process by memory networks or transformers. However, these methods ignore the distinct domains of each dataset. Therefore, they need to update the entire caption model parameters when meeting new samples, which is time-consuming and calculation-intensive. To address this challenge, we propose a novel personalized image captioning framework that leverages user context to consider personality factors. Additionally, our framework utilizes the prefix-tuning paradigm to extract knowledge from a frozen large language model, reducing the gap between different language domains. Specifically, we employ CLIP to extract the visual features of an image and align the semantic space using a query-guided mapping network. By incorporating the transformer layer, we merge the visual features with the user's contextual prior knowledge to generate informative prefixes. Moreover, we employ GPT-2 as the frozen large language model. With a small number of parameters to be trained, our model performs efficiently and effectively. Our model outperforms existing baseline models on Instagram and YFCC100M datasets across five evaluation metrics, demonstrating its superiority, including twofold improvements in metrics such as BLEU-4 and CIDEr.
MOESM2 of A novel strategy for protein production using non-classical secretion pathway in Bacillus subtilis
Creators: name: Jingqi Chen
name: Liuqun Zhao
name: Fu, Gang
name: Wenjuan Zhou
name: Yuanxia Sun
name: Zheng, Ping
name: Jibin Sun
name: Dawei Zhang
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Inorganic Chemistry
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 2: Table S1. Reporter proteins screened out for the study of non-classical secretion pathway.
Neoconocephalus affinis
Creators: name: Yong, Sheyla
name: Perez-Gelabert, Daniel E.
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Orthoptera
Tettigoniidae
Neoconocephalus
Neoconocephalus affinis

description: Neoconocephalus affinis (Palisot de Beauvois, 1805)
Locusta affinis Palisot de Beauvois, 1805: 219, pl. 7, Fig. 5. Neoconocephalus affinis: T. Walker and Greenfield, 1983: 364, Figs 6, 12, 18, 22, 24.
Type sex unknown, from “San Domingo ”, Hispaniola. [Deposition unknown].
Distribution. Greater Antilles, Central America and South America.
description: Published as part of Yong, Sheyla & Perez-Gelabert, Daniel E., 2014, Grasshoppers, Crickets and Katydids (Insecta: Orthoptera) of Cuba: an annotated checklist, pp. 401-438 in Zootaxa 3827 (4) on page 429, DOI: 10.11646/zootaxa.3827.4.1, http://zenodo.org/record/228581
How digital will the future be? Analysis of prospective scenarios
Creators: name: Bugeau, Aurélie
name: Ligozat, Anne-Laure
Publisher: name: arXiv
Year: 2023
Subjects: subject: Computers and Society (cs.CY)
subject: FOS: Computer and information sciences

description: With the climate change context, many prospective studies, generally encompassing all areas of society, imagine possible futures to expand the range of options. The role of digital technologies within these possible futures is rarely specifically targeted. Which digital technologies and methodologies do these studies envision in a world that has mitigated and adapted to climate change? In this paper, we propose a typology for scenarios to survey digital technologies and their applications in 14 prospective studies and their corresponding 35 future scenarios. Our finding is that all the scenarios consider digital technology to be present in the future. We observe that only a few of them question our relationship with digital technology and all aspects related to its materiality, and none of the general studies envision breakthroughs concerning technologies used today. Our result demonstrates the lack of a systemic view of information and communication technologies. We therefore argue for new prospective studies to envision the future of ICT.
Additional file 4: Figure S3. of Combined strategies for improving expression of Citrobacter amalonaticus phytase in Pichia pastoris
Creators: name: Li, Cheng
name: Lin, Ying
name: Xueyun Zheng
name: Pang, Nuo
name: Xihao Liao
name: Xiaoxiao Liu
name: Yuanyuan Huang
name: Shuli Liang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Quantitative PCR assay of the Phy copy number in genomic DNA of recombinant yeast strains GS115/Phy, GS115/AOXm, GS115/SP-D, GS115/αE10 and GS115/α∆57-70. The threshold value (horizontal dashed line) was set at 0.2. The values indicate the average ± standard deviations from three independent qPCR experiments. (PDF 273 kb)
MOESM3 of A novel strategy for protein production using non-classical secretion pathway in Bacillus subtilis
Creators: name: Jingqi Chen
name: Liuqun Zhao
name: Fu, Gang
name: Wenjuan Zhou
name: Yuanxia Sun
name: Zheng, Ping
name: Jibin Sun
name: Dawei Zhang
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3: Table S2. Primers used in this study.
Spiker+: a framework for the generation of efficient Spiking Neural Networks FPGA accelerators for inference at the edge
Creators: name: Carpegna, Alessio
name: Savino, Alessandro
name: Di Carlo, Stefano
Publisher: name: arXiv
Year: 2024
Subjects: subject: Neural and Evolutionary Computing (cs.NE)
subject: Artificial Intelligence (cs.AI)
subject: Hardware Architecture (cs.AR)
subject: FOS: Computer and information sciences

description: Including Artificial Neural Networks in embedded systems at the edge allows applications to exploit Artificial Intelligence capabilities directly within devices operating at the network periphery. This paper introduces Spiker+, a comprehensive framework for generating efficient, low-power, and low-area customized Spiking Neural Networks (SNN) accelerators on FPGA for inference at the edge. Spiker+ presents a configurable multi-layer hardware SNN, a library of highly efficient neuron architectures, and a design framework, enabling the development of complex neural network accelerators with few lines of Python code. Spiker+ is tested on two benchmark datasets, the MNIST and the Spiking Heidelberg Digits (SHD). On the MNIST, it demonstrates competitive performance compared to state-of-the-art SNN accelerators. It outperforms them in terms of resource allocation, with a requirement of 7,612 logic cells and 18 Block RAMs (BRAMs), which makes it fit in very small FPGA, and power consumption, draining only 180mW for a complete inference on an input image. The latency is comparable to the ones observed in the state-of-the-art, with 780us/img. To the authors' knowledge, Spiker+ is the first SNN accelerator tested on the SHD. In this case, the accelerator requires 18,268 logic cells and 51 BRAM, with an overall power consumption of 430mW and a latency of 54 us for a complete inference on input data. This underscores the significance of Spiker+ in the hardware-accelerated SNN landscape, making it an excellent solution to deploy configurable and tunable SNN architectures in resource and power-constrained edge applications.
Neoconocephalus carbonarius Redtenbacher 1891
Creators: name: Yong, Sheyla
name: Perez-Gelabert, Daniel E.
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Orthoptera
Tettigoniidae
Neoconocephalus
Neoconocephalus carbonarius

description: Neoconocephalus carbonarius (Redtenbacher, 1891)
Conocephalus carbonarius Redtenbacher, 1891: 385, 424. Conocephaloides carbonarius: Rehn, 1909: 215. Neoconocephalus carbonarius: T. Walker and Greenfield, 1983: 382, figs. 4, 22, 32.
Syntypes male, from Cuba. [MHNG].
Distribution. Cuba.
description: Published as part of Yong, Sheyla & Perez-Gelabert, Daniel E., 2014, Grasshoppers, Crickets and Katydids (Insecta: Orthoptera) of Cuba: an annotated checklist, pp. 401-438 in Zootaxa 3827 (4) on page 429, DOI: 10.11646/zootaxa.3827.4.1, http://zenodo.org/record/228581
A Corrected Score Function Framework for Modelling Circadian Gene Expression
Creators: name: Gorczyca, Michael
name: McDonald, Tavish
name: Sefas, Justice
Publisher: name: arXiv
Year: 2024
Subjects: subject: Applications (stat.AP)
subject: Methodology (stat.ME)
subject: FOS: Computer and information sciences

description: Many biological processes display oscillatory behavior based on an approximately 24 hour internal timing system specific to each individual. One process of particular interest is gene expression, for which several circadian transcriptomic studies have identified associations between gene expression during a 24 hour period and an individual's health. A challenge with analyzing data from these studies is that each individual's internal timing system is offset relative to the 24 hour day-night cycle, where day-night cycle time is recorded for each collected sample. Laboratory procedures can accurately determine each individual's offset and determine the internal time of sample collection. However, these laboratory procedures are labor-intensive and expensive. In this paper, we propose a corrected score function framework to obtain a regression model of gene expression given internal time when the offset of each individual is too burdensome to determine. A feature of this framework is that it does not require the probability distribution generating offsets to be symmetric with a mean of zero. Simulation studies validate the use of this corrected score function framework for cosinor regression, which is prevalent in circadian transcriptomic studies. Illustrations with three real circadian transcriptomic data sets further demonstrate that the proposed framework consistently mitigates bias relative to using a score function that does not account for this offset.
MOESM1 of A novel strategy for protein production using non-classical secretion pathway in Bacillus subtilis
Creators: name: Jingqi Chen
name: Liuqun Zhao
name: Fu, Gang
name: Wenjuan Zhou
name: Yuanxia Sun
name: Zheng, Ping
name: Jibin Sun
name: Dawei Zhang
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Fig. S1. Prediction of signal peptide by SignalIP 4.1.
MOESM2 of Analysis of asymptomatic and clinical malaria in urban and suburban settings of southwestern Ethiopia in the context of sustaining malaria control and approaching elimination
Creators: name: Guofa Zhou
name: Delenasaw Yewhalaw
name: Lo, Eugenia
name: Daibin Zhong
name: Xiaoming Wang
name: Teshome Degefa
name: Endalew Zemene
name: Ming-Chieh Lee
name: Estifanos Kebede
name: Tushune, Kora
name: Guiyun Yan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology

description: Additional file 2. Results of multiple regression. Dependent variable was Plasmodium falciparum (confirmed positive or negative).
MOESM3 of Analysis of asymptomatic and clinical malaria in urban and suburban settings of southwestern Ethiopia in the context of sustaining malaria control and approaching elimination
Creators: name: Guofa Zhou
name: Delenasaw Yewhalaw
name: Lo, Eugenia
name: Daibin Zhong
name: Xiaoming Wang
name: Teshome Degefa
name: Endalew Zemene
name: Ming-Chieh Lee
name: Estifanos Kebede
name: Tushune, Kora
name: Guiyun Yan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 60506 Virology

description: Additional file 3. Results of multiple regression. Dependent variable was Plasmodium vivax (confirmed positive or negative).
MOESM1 of Analysis of asymptomatic and clinical malaria in urban and suburban settings of southwestern Ethiopia in the context of sustaining malaria control and approaching elimination
Creators: name: Guofa Zhou
name: Delenasaw Yewhalaw
name: Lo, Eugenia
name: Daibin Zhong
name: Xiaoming Wang
name: Teshome Degefa
name: Endalew Zemene
name: Ming-Chieh Lee
name: Estifanos Kebede
name: Tushune, Kora
name: Guiyun Yan
Publisher: name: Figshare
Year: 2016
Subjects: Space Science
Medicine
Computational Biology

description: Additional file 1. Demographic characteristics of the study population.
Additional file 1: Table S1. of Characteristics and risk factors for 28-day mortality of hospital acquired fungemias in ICUs: data from the EUROBACT study
Creators: name: José-Artur Paiva
name: Pereira, José
name: Tabah, Alexis
name: Mikstacki, Adam
name: Carvalho, Frederico De
name: Koulenti, Despoina
name: Ruckly, Stéphane
name: Çakar, Nahit
name: Benoit Misset
name: Dimopoulos, George
name: Antonelli, Massimo
name: Rello, Jordi
name: Xiaochun Ma
name: Tamowicz, Barbara
name: Jean-François Timsit
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Computational Biology

description: Baseline characteristics of patients with fungemia. Table S2 Characteristics of fungemia episodes at diagnosis. (DOCX 19 kb)
BOLALAR VA O'SMIRLARDA ADHD (DIQQAT YETISHMOVCHILIGI VA HIPERAKTIVLIK BUZILISHI) DAVOLASH USULLARI: DORILAR VA MUQOBIL USULLAR
Creators: name: Mirdjalilova, Bargida
name: Maxmudxonova, Naima
Publisher: name: Zenodo
Year: 2024

description: Diqqat yetishmovchiligi va giperaktivlik buzilishi (ADHD) bolalar va o‘smirlar orasida keng tarqalgan ruhiy holat bo‘lib, diqqatni jamlash, impulsiv xatti-harakatlar va giperaktivlik bilan namoyon bo‘ladi. Ushbu maqolada ADHDni davolashda qo‘llaniladigan dori vositalari hamda muqobil usullar haqida so‘z boradi.
Additional file 8: of Comparative genomic analyses of freshly isolated Giardia intestinalis assemblage A isolates
Creators: name: Ankarklev, Johan
name: Franzén, Oscar
name: Peirasmaki, Dimitra
name: Jerlström-Hultqvist, Jon
name: Lebbad, Marianne
name: Andersson, Jan
name: Andersson, Björn
name: Svärd, Staffan
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Localization of BPI-like proteins in Giardia using epitope tagging. (DOCX 244 kb)
Additional file 3: of Comparative genomic analyses of freshly isolated Giardia intestinalis assemblage A isolates
Creators: name: Ankarklev, Johan
name: Franzén, Oscar
name: Peirasmaki, Dimitra
name: Jerlström-Hultqvist, Jon
name: Lebbad, Marianne
name: Andersson, Jan
name: Andersson, Björn
name: Svärd, Staffan
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Distribution of read length and assembly positions. (DOCX 220 kb)
Additional file 7: of Comparative genomic analyses of freshly isolated Giardia intestinalis assemblage A isolates
Creators: name: Ankarklev, Johan
name: Franzén, Oscar
name: Peirasmaki, Dimitra
name: Jerlström-Hultqvist, Jon
name: Lebbad, Marianne
name: Andersson, Jan
name: Andersson, Björn
name: Svärd, Staffan
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry

description: Strcutural modellling of two Giardia BPI-like proteins. (DOCX 486 kb)
Additional file 9: of Comparative genomic analyses of freshly isolated Giardia intestinalis assemblage A isolates
Creators: name: Ankarklev, Johan
name: Franzén, Oscar
name: Peirasmaki, Dimitra
name: Jerlström-Hultqvist, Jon
name: Lebbad, Marianne
name: Andersson, Jan
name: Andersson, Björn
name: Svärd, Staffan
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Primers and cloning of BPI-like genes. (DOCX 126 kb)
Re:Draw -- Context Aware Translation as a Controllable Method for Artistic Production
Creators: name: Cardoso, Joao Liborio
name: Banterle, Francesco
name: Cignoni, Paolo
name: Wimmer, Michael
Publisher: name: arXiv
Year: 2024
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Artificial Intelligence (cs.AI)
subject: Graphics (cs.GR)
subject: Multimedia (cs.MM)
subject: FOS: Computer and information sciences
subject: I.2.6; I.2.1; J.5

description: We introduce context-aware translation, a novel method that combines the benefits of inpainting and image-to-image translation, respecting simultaneously the original input and contextual relevance -- where existing methods fall short. By doing so, our method opens new avenues for the controllable use of AI within artistic creation, from animation to digital art.
 As an use case, we apply our method to redraw any hand-drawn animated character eyes based on any design specifications - eyes serve as a focal point that captures viewer attention and conveys a range of emotions, however, the labor-intensive nature of traditional animation often leads to compromises in the complexity and consistency of eye design. Furthermore, we remove the need for production data for training and introduce a new character recognition method that surpasses existing work by not requiring fine-tuning to specific productions. This proposed use case could help maintain consistency throughout production and unlock bolder and more detailed design choices without the production cost drawbacks. A user study shows context-aware translation is preferred over existing work 95.16% of the time.
Neoconocephalus maxillosus Fabricius 1775
Creators: name: Yong, Sheyla
name: Perez-Gelabert, Daniel E.
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Orthoptera
Tettigoniidae
Neoconocephalus
Neoconocephalus maxillosus

description: Neoconocephalus maxillosus (Fabricius, 1775)
Locusta maxillosa Fabricius, 1775: 284. Conocephaloides maxillosus: Rehn, 1909: 213. Neoconocephalus maxillosus: Zayas, 1976: 65; T. Walker and Greenfield, 1983: 377, Figs 10, 16, 23, 30.
Type lost, from “ America ”. [Deposition unknown].
Distribution. Antilles and South America.
description: Published as part of Yong, Sheyla & Perez-Gelabert, Daniel E., 2014, Grasshoppers, Crickets and Katydids (Insecta: Orthoptera) of Cuba: an annotated checklist, pp. 401-438 in Zootaxa 3827 (4) on page 429, DOI: 10.11646/zootaxa.3827.4.1, http://zenodo.org/record/228581
A Micro Architectural Events Aware Real-Time Embedded System Fault Injector
Creators: name: Magliano, Enrico
name: Carpegna, Alessio
name: Savino, Alessadro
name: Di Carlo, Stefano
Publisher: name: arXiv
Year: 2024
Subjects: subject: Hardware Architecture (cs.AR)
subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: In contemporary times, the increasing complexity of the system poses significant challenges to the reliability, trustworthiness, and security of the SACRES. Key issues include the susceptibility to phenomena such as instantaneous voltage spikes, electromagnetic interference, neutron strikes, and out-of-range temperatures. These factors can induce switch state changes in transistors, resulting in bit-flipping, soft errors, and transient corruption of stored data in memory. The occurrence of soft errors, in turn, may lead to system faults that can propel the system into a hazardous state. Particularly in critical sectors like automotive, avionics, or aerospace, such malfunctions can have real-world implications, potentially causing harm to individuals.
 This paper introduces a novel fault injector designed to facilitate the monitoring, aggregation, and examination of micro-architectural events. This is achieved by harnessing the microprocessor's PMU and the debugging interface, specifically focusing on ensuring the repeatability of fault injections. The fault injection methodology targets bit-flipping within the memory system, affecting CPU registers and RAM. The outcomes of these fault injections enable a thorough analysis of the impact of soft errors and establish a robust correlation between the identified faults and the essential timing predictability demanded by SACRES.
Additional file 5: of Comparative genomic analyses of freshly isolated Giardia intestinalis assemblage A isolates
Creators: name: Ankarklev, Johan
name: Franzén, Oscar
name: Peirasmaki, Dimitra
name: Jerlström-Hultqvist, Jon
name: Lebbad, Marianne
name: Andersson, Jan
name: Andersson, Björn
name: Svärd, Staffan
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Computational Biology

description: HCMP variability. Variability of HCMP genes in the different assemblage A isolates, WB, AS98 and AS175. (DOCX 686 kb)
Additional file 1: of Comparative genomic analyses of freshly isolated Giardia intestinalis assemblage A isolates
Creators: name: Ankarklev, Johan
name: Franzén, Oscar
name: Peirasmaki, Dimitra
name: Jerlström-Hultqvist, Jon
name: Lebbad, Marianne
name: Andersson, Jan
name: Andersson, Björn
name: Svärd, Staffan
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: Biological characterization of the new assemblage AII isolates. Trophozoite growth rate in medium supplemented with either bovine or human serum. (DOCX 54 kb)
Additional file 5: of Oral administration of a select mixture of Bacillus probiotics generates Tr1 cells in weaned F4ab/acR− pigs challenged with an F4+ ETEC/VTEC/EPEC strain
Creators: name: Zhou, Dong
name: Zhu, Yao-Hong
name: Zhang, Wei
name: Wang, Meng-Ling
name: Fan, Wen-Yi
name: Song, Dan
name: Yang, Gui-Yan
name: Jensen, Bent
name: Jiu-Feng Wang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Dose effect of oral administration of BLS-mix on the growth of newly weaned pigs before and after F4 + ETEC/VTEC/EPEC challenge. The table shows the growth of newly weaned pigs before and after F4+ ETEC/VTEC/EPEC challenge. In the first 2 weeks following the challenge, average daily weight gain and feed intake were lower in ETEC pigs compared with CONT pigs (P = 0.011 and P = 0.018, respectively), but there were no differences relative to the CONT pigs in these parameters in the LDBE or HDBE groups.
Heuristic predictions of RMP configurations for ELM suppression in ITER burning plasmas and their impact on divertor performance
Creators: name: Frerichs, H.
name: van Blarcum, J.
name: Feng, Y.
name: Li, L.
name: Liu, Y. Q.
name: Loarte, A.
name: Park, J. -K.
name: Pitts, R. A.
name: Schmitz, O.
name: Yang, S. M.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: A subspace of resonant magnetic perturbation (RMP) configurations for edge localized mode (ELM) suppression is predicted for H-mode burning plasmas at 15 MA current and 5.3 T magnetic field in ITER. Perturbation of the core plasma can be reduced by a factor of 2 for equivalent edge stability proxies, while the perturbed plasma boundary geometry remains mostly resilient. The striation width of perturbed field lines connecting from the main plasma (normalized poloidal flux $< 1$) to the divertor targets is found to be significantly larger than the expected heat load width in the absence of RMPs. This facilitates heat load spreading with peak values at an acceptable level below 10 MW m${}^{-2}$ on the outer target already at moderate gas fueling and low Ne seeding for additional radiative dissipation of the 100 MW of power into the scrape-off layer (SOL). On the inner target, however, re-attachment is predicted away from the equilibrium strike point due to increased upstream heat flux, higher downstream temperature and less efficient impurity radiation.
description: submitted in Nuclear Fusion
Dynamics of non-Hermitian Floquet Wannier-Stark system
Creators: name: Zhang, H. P.
name: Zhang, K. L.
name: Song, Z.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We study the dynamics of the non-Hermitian Floquet Wannier-Stark system in the framework of the tight-binding approximation, where the hopping strength is a periodic function of time with Floquet frequency $ω$. It is shown that the energy level of the instantaneous Hamiltonian is still equally spaced and independent of time $t$ and the Hermiticity of the hopping term. In the case of off resonance, the dynamics are still periodic, while the occupied energy levels spread out at the resonance, exhibiting $t^z$ behavior. Analytic analysis and numerical simulation show that the level-spreading dynamics for real and complex hopping strengths exhibit distinct behaviors and are well described by the dynamical exponents $z=1$ and $z=1/2$, respectively.
description: 20 pages, 6 figures
Neoconocephalus triops Linnaeus 1758
Creators: name: Yong, Sheyla
name: Perez-Gelabert, Daniel E.
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Orthoptera
Tettigoniidae
Neoconocephalus
Neoconocephalus triops

description: Neoconocephalus triops (Linnaeus, 1758)
Gryllus (Tettigonia) triops Linnaeus, 1758: 430, 1767: 697. Neoconocephalus triops: Zayas, 1976: 65; T. Walker and Greenfield, 1983: 371, figs. 5, 21, 22, 28.
Unspecified primary type, from "Indiis", probably Caribbean: West Indies. [NHM].
Distribution. Bahamas, Bermuda, Cuba, Dominica, Hispaniola, Jamaica, Mona Island, Panama, Trinidad, St. Croix, St. Thomas and Mexico.
description: Published as part of Yong, Sheyla & Perez-Gelabert, Daniel E., 2014, Grasshoppers, Crickets and Katydids (Insecta: Orthoptera) of Cuba: an annotated checklist, pp. 401-438 in Zootaxa 3827 (4) on page 429, DOI: 10.11646/zootaxa.3827.4.1, http://zenodo.org/record/228581
Additional file 4: of Oral administration of a select mixture of Bacillus probiotics generates Tr1 cells in weaned F4ab/acR− pigs challenged with an F4+ ETEC/VTEC/EPEC strain
Creators: name: Zhou, Dong
name: Zhu, Yao-Hong
name: Zhang, Wei
name: Wang, Meng-Ling
name: Fan, Wen-Yi
name: Song, Dan
name: Yang, Gui-Yan
name: Jensen, Bent
name: Jiu-Feng Wang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Pharmacology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Effects of BLS-mix on diarrhea scores of newly weaned F4ab/acR − pigs following F4 + ETEC/VTEC/EPEC challenge. The figures show the distribution of diarrhea scores in (A) week 1 (before F4+ ETEC/VTEC/EPEC challenge) and (B) week 2 (after F4+ ETEC/VTEC/EPEC challenge) for the indicated pigs. Data are presented as the frequency of each diarrhea score within pig days (n = 8 pigs per group); No difference between the indicated groups was observed (P > 0.05); non-parametric Friedman’s test.
Influence of resonant plasmonic nanoparticles on optically accessing the valley degree of freedom in 2D semiconductors
Creators: name: Bucher, Tobias
name: Fedorova, Zlata
name: Abasifard, Mostafa
name: Mupparapu, Rajeshkumar
name: Wurdack, Matthias J.
name: Najafidehaghani, Emad
name: Gan, Ziyang
name: Knopf, Heiko
name: George, Antony
name: Eilenberger, Falk
name: Pertsch, Thomas
name: Turchanin, Andrey
name: Staude, Isabelle
Publisher: name: arXiv
Year: 2024
Subjects: subject: Optics (physics.optics)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The valley degree of freedom is one of the most intriguing properties of atomically thin transition metal dichalcogenides. Together with the possibility to address this degree of freedom by valley-contrasting optical selection rules, it has the potential to enable a completely new class of future electronic and optoelectronic devices. Resonant optical nanostructures emerge as promising tools for interacting with and controlling the valley degree of freedom at the nanoscale. However, a critical understanding gap remains in how nanostructures and their nearfields affect the circular polarization properties of valley-selective emission hindering further developments in this field. In order to address this issue, our study delves into the experimental investigation of a hybrid model system where valley-specific emission from a monolayer of molybdenum disulfide is interacting with a resonant plasmonic nanosphere. Contrary to the simple intuition suggesting that a centrosymmetric nanoresonator preserves the degree of circular polarization in the forward scattered farfield by angular momentum conservation, our cryogenic photoluminescence microscopy reveals that the light emitted from the nanoparticle position is largely unpolarized, i.e. we observe depolarization. We rigorously study the nature of this phenomenon numerically considering the monolayer-nanoparticle interaction at different levels including excitation and emission. In doing so, we find that the farfield degree of polarization strongly reduces in the hybrid system when including excitons emitting from outside of the system's symmetry point, which in combination with depolarisation at the excitation level causes the observed effect. Our results highlight the importance of considering spatially distributed emitters for precise predictions of polarization responses in these hybrid systems.
description: Tobias Bucher and Zlata Fedorova contributed equally to this work. 29 pages, 6 figures
Optically-Trapped Nanodiamond-Relaxometry Detection of Nanomolar Paramagnetic Spins in Aqueous Environments
Creators: name: Iyer, Shiva
name: Yao, Changyu
name: Lazorik, Olivia
name: Kashem, Md Shakil Bin
name: Wang, Pengyun
name: Glenn, Gianna
name: Mohs, Michael
name: Shi, Yinyao
name: Mansour, Michael
name: Henriksen, Erik
name: Murch, Kater
name: Mukherji, Shankar
name: Zu, Chong
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Physics (quant-ph)
subject: Biological Physics (physics.bio-ph)
subject: FOS: Physical sciences

description: Probing electrical and magnetic properties in aqueous environments remains a frontier challenge in nanoscale sensing. Our inability to do so with quantitative accuracy imposes severe limitations, for example, on our understanding of the ionic environments in a diverse array of systems, ranging from novel materials to the living cell. The Nitrogen-Vacancy (NV) center in fluorescent nanodiamonds (FNDs) has emerged as a good candidate to sense temperature, pH, and the concentration of paramagnetic species at the nanoscale, but comes with several hurdles such as particle-to-particle variation which render calibrated measurements difficult, and the challenge to tightly confine and precisely position sensors in aqueous environment. To address this, we demonstrate relaxometry with NV centers within optically-trapped FNDs. In a proof of principle experiment, we show that optically-trapped FNDs enable highly reproducible nanomolar sensitivity to the paramagnetic ion, (\mathrm{Gd}^{3+}). We capture the three distinct phases of our experimental data by devising a model analogous to nanoscale Langmuir adsorption combined with spin coherence dynamics. Our work provides a basis for routes to sense free paramagnetic ions and molecules in biologically relevant conditions.
description: 7 pages, 3 figures
Additional file 3: of Oral administration of a select mixture of Bacillus probiotics generates Tr1 cells in weaned F4ab/acR− pigs challenged with an F4+ ETEC/VTEC/EPEC strain
Creators: name: Zhou, Dong
name: Zhu, Yao-Hong
name: Zhang, Wei
name: Wang, Meng-Ling
name: Fan, Wen-Yi
name: Song, Dan
name: Yang, Gui-Yan
name: Jensen, Bent
name: Jiu-Feng Wang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Dose effects of oral administration of BLS-mix on the incidence and duration of diarrhea in newly weaned pigs before and after F4 + ETEC/VTEC/EPEC challenge. The table shows the incidence and duration of diarrhea in newly weaned pigs for 2 weeks. The diarrhea score distributions in week 1 and week 2 for pigs subjected to different treatments were unaffected by the challenge. No difference in the incidence of diarrhea was found among the 4 groups (P > 0.05).
Data Quality Matters: Suicide Intention Detection on Social Media Posts Using RoBERTa-CNN
Creators: name: Lin, Emily
name: Sun, Jian
name: Chen, Hsingyu
name: Mahoor, Mohammad H.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Computation and Language (cs.CL)
subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: Suicide remains a pressing global health concern, necessitating innovative approaches for early detection and intervention. This paper focuses on identifying suicidal intentions in posts from the SuicideWatch subreddit by proposing a novel deep-learning approach that utilizes the state-of-the-art RoBERTa-CNN model. The robustly Optimized BERT Pretraining Approach (RoBERTa) excels at capturing textual nuances and forming semantic relationships within the text. The remaining Convolutional Neural Network (CNN) head enhances RoBERTa's capacity to discern critical patterns from extensive datasets. To evaluate RoBERTa-CNN, we conducted experiments on the Suicide and Depression Detection dataset, yielding promising results. For instance, RoBERTa-CNN achieves a mean accuracy of 98% with a standard deviation (STD) of 0.0009. Additionally, we found that data quality significantly impacts the training of a robust model. To improve data quality, we removed noise from the text data while preserving its contextual content through either manually cleaning or utilizing the OpenAI API.
description: 4 pages, 1 figure, 4 tables
Tylencholaimus intermedius Pena-Santiago & Coomans 1996
Creators: name: Ahmad, Wasim
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Nematoda
Adenophorea
Dorylaimida
Dorylaimidae
Tylencholaimus
Tylencholaimus intermedius

description: Tylencholaimus intermedius Peña-Santiago & Coomans, 1996
Measurements: Table 2
Habitat and locality: Soil around roots of bushes and forest trees from Rifle Range Road, opposite Maurname reservoir, Singapore; collected on 27 August 2003.
Remarks: Peňa-Santiago & Coomans (1996) described Tylencholaimus intermedius from Spain. Ahmad and Araki (2003) reported two females of this species from Japan and recently, Ahmad et al. (2009) recorded a single specimen from Korea. The present specimens from Singapore conform well with the type specimens as well as the Japanese and Korean specimens. It seems that this species is quite widely distributed in East and South East Asia.
Recently, Andrássy (2009) transferred this species to the genus Tantunema because of its small amphids and shape of lip region. We have examined this species from Japan, Korea as well as the present one from Singapore. In all these specimens, the amphids are consistently cup-shaped with slit-like aperture and a postlabial sclerotization is present. The genus Tantunema is characterized by the presence of a pore-like amphid and none of the three species presently described under this genus has post-labial sclerotozation. Hence, the placement of this species under Tylencholaimus appears more justified.
description: Published as part of Ahmad, Wasim, 2010, Three new and a known species of Tylencholaimoidea (Nematoda: Dorylaimida) from Singapore, pp. 51-64 in Zootaxa 2505 on page 63, DOI: 10.5281/zenodo.195888