cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 2 of Clinical, biochemical and molecular phenotype of congenital disorders of glycosylation: long-term follow-up
Creators: name: Bogdańska, Anna
name: Lipiński, Patryk
name: Szymańska-Rożek, Paulina
name: Jezela-Stanek, Aleksandra
name: Rokicki, Dariusz
name: Socha, Piotr
name: Tylki-Szymańska, Anna
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Biotechnology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology
subject: 60506 Virology
subject: Computational Biology

description: Additional file 2. Supplementary Table S1. Detailed characteristics of study patients.
Theoretically predicted picosecond optical switching of spin chirality in multiferroics
Creators: name: Mochizuki, Masahito
name: Nagaosa, Naoto
Publisher: name: arXiv
Year: 2010
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We show theoretically with an accurate spin Hamiltonian describing the multiferroic Mn perovskites that the application of the picosecond optical pulse with a terahertz frequency can switch the spin chirality through intensely exciting the electromagnons. There are four states with different spin chiralities, i.e. clockwise and counterclockwise ab/bc-plane spin spirals, and by tuning the strength, shape and length of the pulse, the switching among these states can be controlled at will. Dynamical pattern formation during the switching is also discussed.
description: 4+ pages, 5 figures
Open Access: Position der Akademien der Wissenschaften Schweiz
Creators: name: Akademien Der Wissenschaften Schweiz
Publisher: name: Zenodo
Year: 2019
Subjects: Akademien Schweiz
Open Access

description: Die Akademien der Wissenschaften Schweiz mit ihren Mitgliedern unterstützen das Prinzip von Open Access mit dem Ziel, freien Zugang zu wissenschaftlichen Publikationen zu gewähren. Über ihre Netzwerke üben sie eine Vermittlungsfunktion zwischen den Fachgemeinschaften und den Policy-Institutionen in der Forschungsförderung aus.
description: cite as: Akademien der Wissenschaften Schweiz (2019): Open Access: Position der Akademien der Wissenschaften Schweiz. zenodo. https://doi.org/10.5281/zenodo.2649126
Study of some B_s to f_0(980) decays in the fourth generation model
Creators: name: Mohanta, R.
Publisher: name: arXiv
Year: 2011
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We study some non leptonic and semileptonic decays of $B_s$ meson into a final scalar meson $f_0(980)$ in the fourth quark generation model. Since the $f_0(980)$ meson is dominantly composed of ($s \bar s $) pair, the mixing induced CP asymmetry in the decay mode $B_s \to J/ψf_0(980)$ would {\it a priori} give $\sin 2 β_s$, where $β_s$ is the $B_s-\bar B_s$ mixing phase. In the standard model this asymmetry is expected to be vanishingly small. We find that in the fourth generation model a large mixing induced CP asymmetry could be possible for this process. Similarly the branching ratios of the rare semileptonic decays $B_s \to f_0(980) l^+ l^-$ and $B_s \to f_0(980) ν\bar ν$ are found to be enhanced significantly from their corresponding standard model values.
description: 18 pages, 5 figures, minor changes in the text, added few references, to appear in Phys. Rev. D
The ALMA view of MP Mus (PDS 66): a protoplanetary disk with no visible gaps down to 4 au scales
Creators: name: Ribas, Á.
name: Macías, E.
name: Weber, P.
name: Pérez, S.
name: Cuello, N.
name: Dong, R.
name: Aguayo, A.
name: Cáceres, C.
name: Carpenter, J.
name: Dent, W. R. F.
name: de Gregorio-Monsalvo, I.
name: Duchêne, G.
name: Espaillat, C. C.
name: Riviere-Marichalar, P.
name: Villenave, M.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We present ALMA multiwavelength observations of the protoplanetary disk around the nearby (d$\sim$100 pc) young solar analog MP Mus (PDS 66). These observations at 0.89 mm, 1.3 mm, and 2.2 mm have angular resolutions of $\sim$ 1", 0.05", and 0.25", respectively, and probe the dust and gas in the system with unprecedented detail and sensitivity. The disk appears smooth down to the 4 au resolution of the 1.3 mm observations, in contrast with most disks observed at comparable spatial scales. The dust disk has a radius of 60$\pm$5 au, a dust mass of $0.14_{-0.06}^{+0.11} M_{\rm Jup}$, and a mm spectral index $<2$ in the inner 30 au, suggesting optically thick emission from grains with high albedo in this region. Several molecular gas lines are also detected extending up to 130$\pm$15 au, similar to small grains traced by scattered light observations. Comparing the fluxes of different CO isotopologues with previous models yields a gas mass of $0.1-1 M_{\rm Jup}$, implying a gas to dust ratio of 1-10. We also measure a dynamical stellar mass of $M_{\rm dyn}$=1.30$\pm$0.08 $M_\odot$ and derive an age of 7-10 Myr for the system. The survival of large grains in an evolved disk without gaps/rings is surprising, and it is possible that existing substructures remain undetected due to optically thick emission at 1.3 mm. Alternatively, small structures may still remain unresolved with the current observations. Based on simple scaling relations for gap-opening planets and gap widths, this lack of substructures places upper limits to the masses of planets in the disk as low as 2 $M_\oplus$-0.06 $M_{\rm Jup}$ at $r > 40$ au. The lack of mm emission at radii $r > 60$ au also suggests that the gap in scattered light between 30-80 au is likely not a gap in the disk density, but a shadow cast by a puffed-up inner disk.
description: 17 pages + 3 appendices. Accepted for publication in Astronomy & Astrophysics
title: Highlights from the 2025 ROR Annual Community Meeting
Creators: name: French, Amanda
Publisher: name: Research Organization Registry (ROR)
Year: 2025
Subjects: classificationCode: 1.2
subject: FOS: Computer and information sciences

description: Highlights of the 2025 ROR annual meeting sessions, including the Community Update, the panel on National PID Policies and Practices, and the session on Successes and Opportunities for ROR in the Asia-Pacific Region.
SCF-FDPS: A Fast $N$-body Code for Simulating Disk-halo Systems
Creators: name: Hozumi, Shunsuke
name: Nitadori, Keigo
name: Iwasawa, Masaki
Publisher: name: arXiv
Year: 2023
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: A fast $N$-body code has been developed for simulating a stellar disk embedded in a live dark matter halo. In generating its Poisson solver, a self-consistent field (SCF) code which inherently possesses perfect scalability is incorporated into a tree code which is parallelized using a library termed Framework for Developing Particle Simulators (FDPS). Thus, the code developed here is called SCF-FDPS. This code has realized the speedup of a conventional tree code by applying an SCF method not only to the calculation of the self-gravity of the halo but also to that of the gravitational interactions between the disk and halo particles. Consequently, in the SCF-FDPS code, a tree algorithm is applied only to calculate the self-gravity of the disk. On a many-core parallel computer, the SCF-FDPS code has performed at least three times, in some case nearly an order of magnitude, faster than an extremely-tuned tree code on it, if the numbers of disk and halo particles are, respectively, fixed for both codes. In addition, the SCF-FDPS code shows that the cpu cost scales almost linearly with the total number of particles and almost inversely with the number of cores. We find that the time evolution of a disk-halo system simulated with the SCF-FDPS code is, in large measure, similar to that obtained using the tree code. We suggest how the present code can be extended to cope with a wide variety of disk-galaxy simulations.
description: 13 pages, 8 figures, accepted for publication in ApJ
Additional file 4 of Clinical, biochemical and molecular phenotype of congenital disorders of glycosylation: long-term follow-up
Creators: name: Bogdańska, Anna
name: Lipiński, Patryk
name: Szymańska-Rożek, Paulina
name: Jezela-Stanek, Aleksandra
name: Rokicki, Dariusz
name: Socha, Piotr
name: Tylki-Szymańska, Anna
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Biotechnology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology
subject: 60506 Virology
subject: Computational Biology

description: Additional file 4. Supplementary Table S3. Comparison of means (with standard deviation) of Tf isoform % for the whole cohort of patients, PMM2-CDG patients and non-PMM2-CDG patients. The last column reports the p-values of the tests comparing the sample means (t-test or Welsh test).
Hot subdwarfs in close binaries observed from space II: Analysis of the light curves
Creators: name: Schaffenroth, V.
name: Barlow, B. N.
name: Pelisoli, I.
name: Geier, S.
name: Kupfer, T.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Hot subdwarfs in close binaries with either M dwarf, brown dwarf or white dwarf companions show unique light variations. In hot subdwarf binaries with M dwarf or brown dwarf companions we can observe the so-called reflection effect and in hot subdwarfs with close white dwarf companions ellipsoidal modulation and/or Doppler beaming. Aims. The analysis of these light variations can be used to derive the mass and radius of the companion and hence determine its nature. Thereby we assume the most probable sdB mass and the radius of the sdB derived by the fit of the spectral energy distribution and the Gaia parallax. In the high signal-to-noise space-based light curves from the Transiting Exoplanet Survey Satellite and the K2 space mission, several reflection effect binaries and ellipsoidal modulation binaries have been observed with much better quality than possible for ground-based observations. The high quality of the light curves allowed us to analyse a large sample of sdB binaries with M dwarf or white dwarf companions using lcurve. For the first time we can constrain the absolute parameters of 19 companions of reflection effect systems covering periods from 2.5 to 19 hours and companion masses from the hydrogen burning limit to early M dwarfs. Moreover, we could determine the mass of eight white dwarf companion to hot subdwarf binaries showing ellipsoidal modulations, covering a so far unexplored period range from 7 to 19 hours. The derived masses of the white dwarf companions show that all but two of the white dwarf companions are most likely helium-core white dwarfs. Combining our results with previously measured rotation velocities allowed us to derive the rotation period of seven sdBs in short-period binaries. In four of those systems the rotation period of the sdB agrees with a tidally locked orbit, in the other three systems the sdB rotates significantly slower.
description: accepted by A&A
A Bouncing Cosmology from VECROs
Creators: name: Brandenberger, Robert
name: Mitchell, Gabrielle A.
Publisher: name: arXiv
Year: 2023
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We argue that, in the same way that in a black hole space-time VECROs will form in order to cancel the gravitational effects of a collapsing mass shell and prevent the formation of a singularity, in a contracting universe a gas of VECROs will form to hold up the contraction, prevent a Big Crunch singularity, and lead to a nonsingular cosmological bounce.
description: 5 pages
Picard groups of punctured spectra of dimension three local hypersurfaces are torsion-free
Creators: name: Dao, Hailong
Publisher: name: arXiv
Year: 2010
Subjects: subject: Commutative Algebra (math.AC)
subject: Algebraic Geometry (math.AG)
subject: FOS: Mathematics
subject: 14C22, 13D07

description: Let (R,m) be a local ring and U_R=Spec(R) -{m} be the punctured spectrum of R. Gabber conjectured that if R is a complete intersection of dimension 3, then the abelian group Pic(U_R) is torsion-free. In this note we prove Gabber's statement for the hypersurface case. We also point out certain connections between Gabber's Conjecture, Van den Bergh's notion of non-commutative crepant resolutions and some well-studied questions in homological algebra over local rings.
description: Some statements/typos fixed thanks to corrections from the referees, main results remain the same
Proximate molecular quasar absorbers: Chemical enrichment and kinematics of the neutral gas
Creators: name: Noterdaeme, P.
name: Balashev, S.
name: Cuellar, R.
name: Krogager, J. -K.
name: Combes, F.
name: De Cia, A.
name: Gupta, N.
name: Ledoux, C.
name: López, S.
name: Srianand, R.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: Proximate molecular quasar absorbers (PH2) are an intriguing population of absorption systems recently uncovered through strong H2 absorption at small velocity separation from the background quasars. We performed a multi-wavelength spectroscopic follow-up of thirteen such systems with VLT/X-Shooter. Here, we present the observations and study the overall chemical enrichment measured from the HI, H2 and metal lines. We combine this with an investigation of the neutral gas kinematics with respect to the quasar host. We find gas-phase metallicities in the range 2% to 40% of the Solar value, i.e. in the upper-half range of HI-selected proximate damped Lyman-alpha systems, but similar to what is seen in intervening H2-bearing systems. This is likely driven by similar selection effects that play against the detection of most metal and molecular rich systems in absorption. Differences are however seen in the abundance of dust (from [Zn/Fe]) and its depletion pattern, when compared to intervening systems, possibly indicating different dust production or destruction close to the AGN. We also note the almost-ubiquitous presence of a high-ionisation phase traced by NV in proximate systems. In spite of the hard UV field from the quasars, we found no strong overall deficit of neutral argon, at least when compared to intervening DLAs. This likely results from argon being mostly neutral in the H2 phase, which actually accounts for a large fraction of the total amount of metals. We measure the quasar systemic redshifts through emission lines from both ionised gas and CO(3-2) emission, the latter being detected in all 6 cases for which we obtained 3-mm data from complementary NOEMA observations. For the first time, we observe a trend between line-of-sight velocity with respect to systemic redshift and metallicity of the absorbing gas. [truncated]
description: Accepted for publication in A&A
动态助词“着”和泰语助词 “อยู่” 的对比研究A Comparative Study of Chinese “着” (zhe) and Thai “อยู่” [juː21]
Creators: name: ทัศนีย์ คำแสงทอง
Publisher: name: บริษัท ธนาเพรส จำกัด
Year: 2567
Subjects: Chinese-Thai particles
the dynamic particle "着"
the particle "อยู่"
comparison

description: วารสารวิชาการภาษาและวัฒนธรรมจีน, 11, 1, 489-510
Gate driven adiabatic quantum pumping in graphene
Creators: name: Prada, Elsa
name: San-Jose, Pablo
name: Schomerus, Henning
Publisher: name: arXiv
Year: 2010
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We propose a new type of quantum pump made out of graphene, adiabatically driven by oscillating voltages applied to two back gates. From a practical point of view, graphene-based quantum pumps present advantages as compared to normal pumps, like enhanced robustness against thermal effects and a wider adiabatic range in driving frequency. From a fundamental point of view, apart from conventional pumping through propagating modes, graphene pumps can tap into evanescent modes, which penetrate deeply into the device as a consequence of chirality. At the Dirac point the evanescent modes dominate pumping and give rise to a universal response under weak driving for short and wide pumps, even though the charge per unit cycle in not quantized.
description: 7 pages, 3 figures. Article for the 2010 Special Issue of Solid State Communications on graphene. Published version
Exploring the biology and evolution of dinoflagellates through rare and uncultured taxa
Creators: name: Cooney, Elizabeth
Publisher: name: University of British Columbia
Year: 2022

description: Dinoflagellates are a diverse group of protists with many unique traits including large genomes packaged into permanently condensed chromosomes, photosynthetic or cryptic plastids acquired vertically or horizontally in serial endosymbioses, and in some taxa, highly complex organelles like nematocysts and the eye-like ocelloid. Because these features promise to expand our understanding of eukaryotic biology, reconstructing how they evolved has become a point of interest. To infer ancestral states, robust and well-supported phylogenies generated from high-coverage transcriptomic datasets are needed. So far, these analyses have relied on transcriptome data from cultured taxa, which are mostly photosynthetic. As half of known dinoflagellate species are non-photosynthetic, current phylogenies fail to reflect the diversity that characterizes this group. Here, I generate single cell transcriptomes from over 150 rare and under-sampled dinoflagellates collected from the environment. Using these data, I explore three major heterotrophic lineages of interest: Abedinium, the Noctilucales, and the complex organelle-bearing members of the Gymnodiniales, the warnowiids. In these investigations I reveal that Abedinium is an independent, deep-branching core dinoflagellate lineage, the unique traits of the Noctilucales are derived rather than ancestral, and the heterotrophic warnowiids retain photosynthetic genes except for photosystem II and RuBisCo, suggesting that this mechanism serves an alternate function in the ocelloid. In the final chapter I generate a comprehensive dinoflagellate phylogeny that better represents the proportion of heterotrophic, athecate, and deep- branching taxa in dinoflagellates. This analysis reveals several new insights, including the early acquisition timing of two histone-like protein (HLP) types, the diversity and punctate distribution of microbial rhodopsins, and the common retention of plastid-derived electron transport genes across heterotrophic dinoflagellates.
Additional file 5 of Clinical, biochemical and molecular phenotype of congenital disorders of glycosylation: long-term follow-up
Creators: name: Bogdańska, Anna
name: Lipiński, Patryk
name: Szymańska-Rożek, Paulina
name: Jezela-Stanek, Aleksandra
name: Rokicki, Dariusz
name: Socha, Piotr
name: Tylki-Szymańska, Anna
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Biotechnology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology
subject: 60506 Virology
subject: Computational Biology

description: Additional file 5. Supplementary Table S4. Means of % tf isoforms before and during treatment for CDG I/II patient (table A), patient #20 with MPI-CDG-I (table B) and patient #21 with MPI-CDG-I (table C). Comparison of means (A and B) or of mean with a single value (C) was performed with applicable statistical test (either t-test, Welsh test, or one-sample t-test).
Некоторые показатели оценки конкурентоспособности индустрии гостеприимства: теоретический аспект
Creators: name: Людмила Валерьевна Семенова
Publisher: name: Московский экономический журнал
Year: 2019
Subjects: индустрия гостеприимства
показатели оценки конкурентоспособности
теоретический подход.
hospitality industry
competitiveness assessment indicators
theoretical approach

description: Основой успешности деятельности предприятия зачастую является четкое осознание собственного положения в условиях конкурентной среды и зачастую очень агрессивного соперничества среди всеми игроками на рынке. Индустрия гостеприимства в условиях постоянного увеличения количества субъектов на рынке также не является исключением. Для объективной оценки собственной конкурентоспособности существует множество походов и показателей. В статье представлен теоретический анализ некоторых актуальных подходов, которые применяются при оценке конкурентной позиции субъектов гостиничного и туристического рынка как агентов экономической деятельности как на региональном, так и местном уровнях.
description: A basis of success of activity of the enterprise often is accurate understanding of own situation in conditions of the competitive environment and often very aggressive rivalry among all players in the market. The hospitality industry in the conditions of continuous increase in number of subjects in the market is also not an exception. For objective assessment of own competitiveness there is a set of campaigns and indicators. The theoretical analysis of some relevant approaches which are applied at assessment of a competitive position of subjects of the hotel and tourist market as agents of economic activity as at the regional, and local levels is presented in article.
Generalised Holographic Electroweak Symmetry Breaking Models and the Possibility of Negative S
Creators: name: Round, Mark
Publisher: name: arXiv
Year: 2011
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Within an AdS/CFT inspired model of electroweak symmetry breaking the effects of various boundary terms and modifications to the background are studied. The effect on the S precision parameter is discussed with particular attention to its sign and whether the theory is unitary when S<0. Connections between the various possible AdS slice models of symmetry breaking are discussed.
Energy-Dependent Enhancement of the Electron-Coupling Spectrum of the Underdoped Bi2Sr2CaCu2O8+d Superconductor
Creators: name: Anzai, H.
name: Ino, A.
name: Kamo, T.
name: Fujita, T.
name: Arita, M.
name: Namatame, H.
name: Taniguchi, M.
name: Fujimori, A.
name: Shen, Z. -X.
name: Ishikado, M.
name: Uchida, S.
Publisher: name: arXiv
Year: 2010
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We have determined the electron-coupling spectrum of superconducting Bi2Sr2CaCu2O8+d from high-resolution angle-resolved photoemission spectra by two deconvolution-free robust methods. As hole concentration decreases, the coupling spectral weight at low energies ~<15 meV shows a twofold and nearly band-independent enhancement, while that around ~65 meV increases moderately, and that in ~>130 meV decreases leading to a crossover of dominant coupling excitation between them. Our results suggest the competition among multiple screening effects, and provide important clues to the source of sufficiently strong low-energy coupling, λLE ~ 1, in underdoped system.
Stellar Dynamical Modeling -- Counting Conserved Quantities
Creators: name: Long, Richard J.
name: Mao, Shude
name: Wang, Yougang
Publisher: name: arXiv
Year: 2023
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Knowing the conserved quantities that a galaxy's stellar orbits conform to is important in helping us understand the stellar distribution and structures within the galaxy. Isolating integrals of motion and resonances are particularly important, non-isolating integrals less so. We compare the behavior and results of two methods for counting the number of conserved quantities, one based on the correlation integral approach and the other a more recent method using machine learning. Both methods use stellar orbit trajectories in phase space as their only input, and we create such trajectories from theoretical spherical, axisymmetric and triaxial model galaxies. The orbits have known isolating integrals and resonances. We find that neither method is fully effective in recovering the numbers of these quantities, nor in determining the number of non-isolating integrals. From a computer performance perspective, we find the correlation integral approach to be the faster. Determining the algebraic formulae of (multiple) conserved quantities from the trajectories has not been possible due to the lack of an appropriate symbolic regression capability. Notwithstanding the shortcomings we have noted, it may be that the methods are usable as part of a trajectory analysis tool kit.
description: Accepted for publication by RAA, 18 pages, 9 figures, 4 tables
Square-tiled cyclic covers
Creators: name: Forni, Giovanni
name: Matheus, Carlos
name: Zorich, Anton
Publisher: name: arXiv
Year: 2010
Subjects: subject: Dynamical Systems (math.DS)
subject: FOS: Mathematics

description: A cyclic cover of the complex projective line branched at four appropriate points has a natural structure of a square-tiled surface. We describe the combinatorics of such a square-tiled surface, the geometry of the corresponding Teichmüller curve, and compute the Lyapunov exponents of the determinant bundle over the Teichmüller curve with respect to the geodesic flow. This paper includes a new example (announced by G. Forni and C. Matheus in \cite{Forni:Matheus}) of a Teichmüller curve of a square-tiled cyclic cover in a stratum of Abelian differentials in genus four with a maximally degenerate Kontsevich--Zorich spectrum (the only known example found previously by Forni in genus three also corresponds to a square-tiled cyclic cover \cite{ForniSurvey}). We present several new examples of Teichmüller curves in strata of holomorphic and meromorphic quadratic differentials with maximally degenerate Kontsevich--Zorich spectrum. Presumably, these examples cover all possible Teichmüller curves with maximally degenerate spectrum. We prove that this is indeed the case within the class of square-tiled cyclic covers.
description: 34 pages, 6 figures. Final version incorporating referees comments. In particular, a gap in the previous version was corrected. This file uses the journal's class file (jmd.cls), so that it is very similar to published version
Additional file 1 of The AppNL-G-F mouse retina is a site for preclinical Alzheimer’s disease diagnosis and research
Creators: name: Vandenabeele, Marjan
name: Veys, Lien
name: Lemmens, Sophie
name: Hadoux, Xavier
name: Gelders, Géraldine
name: Masin, Luca
name: Lutgarde Serneels
name: Theunis, Jan
name: Saito, Takashi
name: Takaomi C. Saido
name: Murali Jayapala
name: Boever, Patrick De
name: Strooper, Bart De
name: Stalmans, Ingeborg
name: Wijngaarden, Peter Van
name: Moons, Lieve
name: Groef, Lies De
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Pharmacology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1: Supplementary figures
Chiral extrapolation of light resonances from one and two-loop unitarized Chiral Perturbation Theory versus lattice results
Creators: name: Pelaez, J. R.
name: Rios, G.
Publisher: name: arXiv
Year: 2010
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We study the pion mass dependence of the rho(770) and f_0(600) masses and widths from one and two-loop unitarized Chiral Perturbation Theory. We show the consistency of one-loop calculations with lattice results for the M_rho, f_pi and the isospin 2 scattering length a_20.Then, we develop and apply the modified Inverse Amplitude Method formalism for two-loop ChPT. In contrast to the f_0(600), the rho(770) is rather sensitive to the two-loop ChPT parameters --our main source of systematic uncertainty. We thus provide two-loop unitarized fits constrained by lattice information on M_rho, f_pi, by the qqbar leading 1/N_c behavior of the rho and by existing estimates of low energy constants. These fits yield relatively stable predictions up to m_pi\simeq 300-350 MeV for the rho coupling and width as well as for all the f_0(600) parameters. We confirm, to two-loops, the weak m_pi dependence of the rho coupling and the KSRF relation, and the existence of two virtual f_0(600) poles for sufficiently high m_pi. At two loops one of these poles becomes a bound state when m_pi is somewhat larger than 300 MeV.
description: 15 pages, to appear in Phys. Rev. D
Tractable Diversity: Scalable Multiperspective Ontology Management via Standpoint EL
Creators: name: Álvarez, Lucía Gómez
name: Rudolph, Sebastian
name: Strass, Hannes
Publisher: name: arXiv
Year: 2023
Subjects: subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: The tractability of the lightweight description logic EL has allowed for the construction of large and widely used ontologies that support semantic interoperability. However, comprehensive domains with a broad user base are often at odds with strong axiomatisations otherwise useful for inferencing, since these are usually context-dependent and subject to diverging perspectives. In this paper we introduce Standpoint EL, a multi-modal extension of EL that allows for the integrated representation of domain knowledge relative to diverse, possibly conflicting standpoints (or contexts), which can be hierarchically organised and put in relation to each other. We establish that Standpoint EL still exhibits EL's favourable PTime standard reasoning, whereas introducing additional features like empty standpoints, rigid roles, and nominals makes standard reasoning tasks intractable.
Pew Research Center: The Tablet Revolution Survey 3 Wave 7
Creators: name: Pew Research Center
name: Group, The Economist
Publisher: name: Roper Center for Public Opinion Research
Year: 2022

description: Tablet computer/iPad use (5); sources/platforms for headlines or quick stories in past week (23); preferred sources/platforms for headlines or quick stories (1); sources/platforms for longer articles or analysis in past 7 days (29); prefer reading long articles or analysis on tablets or other platforms (6); reason for reading longer articles or analysis (1); keep up with favorite news sources more or less than before tablet (1); preferred news app (13); read books on tablet (6); read printed books (2); read books on eReader (2); internet access on tablet (1).
Extremal graphs for the identifying code problem
Creators: name: Foucaud, Florent
name: Guerrini, Eleonora
name: Kovse, Matjaz
name: Naserasr, Reza
name: Parreau, Aline
name: Valicov, Petru
Publisher: name: arXiv
Year: 2010
Subjects: subject: Discrete Mathematics (cs.DM)
subject: Combinatorics (math.CO)
subject: FOS: Computer and information sciences
subject: FOS: Mathematics

description: An identifying code of a graph G is a dominating set C such that every vertex x of G is distinguished from all other vertices by the set of vertices in C that are at distance at most 1 from x. The problem of finding an identifying code of minimum possible size turned out to be a challenging problem. It was proved by N. Bertrand that if a graph on n vertices with at least one edge admits an identifying code, then a minimum identifying code has size at most n-1. Some classes of graphs whose smallest identifying code is of size n-1 were already known, and few conjectures were formulated to classify all these graphs. In this paper, disproving these conjectures, we classify all finite graphs for which all but one of the vertices are needed to form an identifying code. We also classify all infinite graphs needing the whole set of vertices in any identifying code. New upper bounds in terms of the number of vertices and the maximum degree of a graph are also provided.
Vagueness in Predicates and Objects
Creators: name: Bennett, Brandon
name: Álvarez, Lucía Gómez
Publisher: name: arXiv
Year: 2023
Subjects: subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: Classical semantics assumes that one can model reference, predication and quantification with respect to a fixed domain of precise referent objects. Non-logical terms and quantification are then interpreted directly in terms of elements and subsets of this domain. We explore ways to generalise this classical picture of precise predicates and objects to account for variability of meaning due to factors such as vagueness, context and diversity of definitions or opinions. Both names and predicative expressions can be given either multiple semantic referents or be associated with semantic referents that incorporate some model of variability. We present a semantic framework, Variable Reference Semantics, that can accommodate several modes of variability in relation to both predicates and objects.
Genetic applications to inform invasive species management on islands : Sitka black-tailed deer in Haida Gwaii
Creators: name: Burgess, Brock Ty
Publisher: name: University of British Columbia
Year: 2022

description: Invasive species are a primary driver of global biodiversity decline, especially on islands, which face elevated extinction rates. Across the Haida Gwaii archipelago (Canada), islands with invasive Sitka black-tailed deer (Odocoileus hemionus sitkensis) exhibit significantly lower species richness and population decline of ecologically and culturally important species. My doctoral research uses population genomics to understand patterns of deer movement across Haida Gwaii and to develop and apply genetic tools for informing management. Using genotypic data at ~13,000 single nucleotide polymorphisms (SNPs) from 181 deer sampled throughout the archipelago, I detected little population structure across 14 islands and evidence of contemporary inter-island deer movement; however, the culturally significant island of SGang Gwaay exhibited genetic isolation, constituting a possible eradication target. Overall, the high connectivity indicated sustainable eradications are likely not possible in most cases, and alternative management interventions are required. I then developed a Genotyping-in-Thousands by sequencing (GT-seq) panel to evaluate and support deer management throughout the archipelago. Using paired high-quality tissue and non-invasive feces and hair, I optimized the panel for poor-quality samples, demonstrating high levels of genotyping success (90.3%) and sample retention (97.6%) at 244 SNPs, then performed a proof-of-concept application to simultaneously provide individual and sex identification, and relatedness estimations. Finally, I investigated the genetic and demographic consequences of deer management using genotypic data collected via GT-seq from pre- and post-cull samples from two offshore islands, including SG̲ang Gwaay. Pre-cull samples showed signals of historical isolation. Moreover, post-cull deer exhibited significantly lower levels of genetic diversity that further strengthened the observed isolation, highlighting the importance of interpreting population genetics studies within the context of previous management operations. Collectively, these studies will directly inform deer management to help restore ecological integrity within Haida Gwaii. More broadly, my research demonstrates the utility of population genomics for improving invasive species management on islands and provides researchers with a cost-effective workflow for efficient high-density genotyping of poor-quality samples typical of elusive or at-risk species.
Equivalence between Redfield and master equation approaches for a time-dependent quantum system and coherence control
Creators: name: Soares-Pinto, D. O.
name: Moussa, M. H. Y.
name: Maziero, J.
name: deAzevedo, E. R.
name: Bonagamba, T. J.
name: Serra, R. M.
name: Céleri, L. C.
Publisher: name: arXiv
Year: 2011
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We present a derivation of the Redfield formalism for treating the dissipative dynamics of a time-dependent quantum system coupled to a classical environment. We compare such a formalism with the master equation approach where the environments are treated quantum mechanically. Focusing on a time-dependent spin-1/2 system we demonstrate the equivalence between both approaches by showing that they lead to the same Bloch equations and, as a consequence, to the same characteristic times $T_{1}$ and $T_{2}$ (associated with the longitudinal and transverse relaxations, respectively). These characteristic times are shown to be related to the operator-sum representation and the equivalent phenomenological-operator approach. Finally, we present a protocol to circumvent the decoherence processes due to the loss of energy (and thus, associated with $T_{1}$). To this end, we simply associate the time-dependence of the quantum system to an easily achieved modulated frequency. A possible implementation of the protocol is also proposed in the context of nuclear magnetic resonance.
description: Comments are welcome
Chemical contamination of the sea – (management of the knowns and) Research on the unknowns
Creators: name: Schymanski, Emma
Publisher: name: Zenodo
Year: 2021

description: Slides prepared for the Discussion Panel held at the Baltic Sea Science Congress Meeting (BSSC2021), October 20, 2021. Panel discussion held with Annemarie van Wezel and hosted by Anna Sobek & Emma Undeman.
title: Дизайн. Креативные задания
Creators: name: ELS IPR BOOKS
Publisher: name: Липецкий государственный технический университет, Профобразование
Year: 2025

description: В учебном пособии представлены креативные задания в области перспективы, пропорционирования и конструирования объектов дизайна. Даны шаблоны оформления и примеры выполнения этих творческих заданий. Подготовлено в соответствии с требованиями Федерального государственного образовательного стандарта среднего профессионального образования. Предназначено для изучения дисциплин «Дизайн-проектирование (композиция, макетирование, современные концепции в искусстве)», «Средства исполнения дизайн-проектов» по специальности «Дизайн (по отраслям)».
A Theoretical Investigation of Magnetic Susceptibility Measurement Using Mach-Zehnder interferometer
Creators: name: Shulman, David
Publisher: name: arXiv
Year: 2023
Subjects: subject: Applied Physics (physics.app-ph)
subject: FOS: Physical sciences

description: In this study, we present a novel method for measuring the magnetic susceptibility of liquids using a Mach-Zehnder interferometer. The proposed technique employs a ring magnet to deform the liquid, while a laser beam passes through the liquid to measure the resulting interference pattern. The deformation of the liquid, caused by the known magnetic field of the ring magnet, is used to calculate the magnetic susceptibility. We provide a comprehensive theoretical framework, including the relevant equations and models, for analyzing the data obtained using this method. We compare the Mach-Zehnder interferometer method with other established techniques, highlighting its advantages and disadvantages. Our findings indicate that the Mach-Zehnder interferometer technique offers high accuracy, sensitivity, and potential applications in characterizing magnetic properties of various liquid systems.
Systematic KMTNet Planetary Anomaly Search. VIII. Complete Sample of 2019 Subprime Field Planets
Creators: name: Jung, Youn Kil
name: Zang, Weicheng
name: Wang, Hanyue
name: Han, Cheongho
name: Gould, Andrew
name: Udalski, Andrzej
name: Albrow, Michael D.
name: Chung, Sun-Ju
name: Hwang, Kyu-Ha
name: Ryu, Yoon-Hyun
name: Shin, In-Gu
name: Shvartzvald, Yossi
name: Yang, Hongjing
name: Yee, Jennifer C.
name: Cha, Sang-Mok
name: Kim, Dong-Jin
name: Kim, Seung-Lee
name: Lee, Chung-Uk
name: Lee, Dong-Joo
name: Lee, Yongseok
name: Park, Byeong-Gon
name: Pogge, Richard W.
name: Mróz, Przemek
name: Szymański, Michał K.
name: Skowron, Jan
name: Poleski, Radek
name: Soszyński, Igor
name: Pietrukowicz, Paweł
name: Kozłowski, Szymon
name: Ulaczyk, Krzysztof
name: Rybicki, Krzysztof A.
name: Iwanek, Patryk
name: Wrona, Marcin
name: Christie, Grant
name: Green, Jonathan
name: Hennerley, Steve
name: Marmont, Andrew
name: Mao, Shude
name: Maoz, Dan
name: McCormick, Jennie
name: Natusch, Tim
name: Penny, Matthew T.
name: Porritt, Ian
name: Zhu, Wei
Publisher: name: arXiv
Year: 2023
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: We complete the publication of all microlensing planets (and ``possible planets'') identified by the uniform approach of the KMT AnomalyFinder system in the 21 KMT subprime fields during the 2019 observing season, namely KMT-2019-BLG-0298, KMT-2019-BLG-1216, KMT-2019-BLG-2783, OGLE-2019-BLG-0249, and OGLE-2019-BLG-0679 (planets), as well as OGLE-2019-BLG-0344, and KMT-2019-BLG-0304 (possible planets). The five planets have mean log mass-ratio measurements of $(-2.6,-3.6,-2.5,-2.2,-2.3)$, median mass estimates of $(1.81,0.094,1.16,7.12,3.34)\, M_{\rm Jup}$, and median distance estimates of $(6.7,2.7,5.9,6.4,5.6)\, {\rm kpc}$, respectively. The main scientific interest of these planets is that they complete the AnomalyFinder sample for 2019, which has a total of 25 planets that are likely to enter the statistical sample. We find statistical consistency with the previously published 33 planets from the 2018 AnomalyFinder analysis according to an ensemble of five tests. Of the 58 planets from 2018-2019, 23 were newly discovered by AnomalyFinder. Within statistical precision, half of all the planets have caustic crossings while half do not (as predicted by Zhu et al. 2014), an equal number of detected planets result from major-image and minor-image light-curve perturbations, and an equal number come from KMT prime fields versus subprime fields.
description: 17 tables, 20 figures, submitted to AAS journals
$Z_2$ spin liquid and chiral antiferromagnetic phase in Hubbard model on the honeycomb lattice: duality between Schwinger-fermion and Schwinger-boson representations
Creators: name: Lu, Yuan-Ming
name: Ran, Ying
Publisher: name: arXiv
Year: 2010
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: In our previous work, we identify the Sublattice-Pairing State (SPS) in Schwinger-fermion representation as the spin liquid phase discovered in recent numerical study on a honeycomb lattice. In this paper, we show that SPS is identical to the zero-flux $Z_2$ spin liquid in Schwinger-boson representation found by Wang\cite{Wang2010} by an explicit duality transformation. SPS is connected to an \emph{unusual} antiferromagnetic ordered phase, which we term as chiral-antiferromagnetic (CAF) phase, by an O(4) critical point. CAF phase breaks the SU(2) spin rotation symmetry completely and has three Goldstone modes. Our results indicate that there is likely a hidden phase transition between CAF phase and simple AF phase at large $U/t$. We propose numerical measurements to reveal the CAF phase and the hidden phase transition.
description: 6 pages, 4 figures, revtex 4, published in a long paper combined with arXiv:1005.4229
Multi-task learning for leveraging noisy labels in automatic analysis of ultrasound images
Creators: name: Mahdavi, Mobina
Publisher: name: University of British Columbia
Year: 2022

description: Supervised machine learning is the standard workflow in training state-of-the-art deep neural networks to automatically analyze, classify, or quantify ultrasound images or videos. However, there are certain challenges regarding the available label set in this context. Since expert annotation is a tedious process, fine-grained and extensive labels are usually not available. The size of data is often limited, and missing labels are an issue. Due to observer variability among different annotators, there is variability in ground truth that manifests as a type of label noise. This thesis aims to investigate the use of multi-task learning to alleviate these issues, in the context of two problems. The first problem is echocardiographic video landmark detection, to quantify the dimensions of the left ventricle of the heart. We first propose a two-headed U-net-shaped convolutional neural network, to detect pairs of inner and outer landmarks on the left ventricle. The model is weakly supervised on the two frames of the video with annotation, with the outer landmarks missing at one of them. Secondly, we propose Differential Learning, which adds a task of ejection fraction comparison to the landmark detection framework, in a Siamese architecture that is trained end-to-end with the main tasks. This auxiliary task is designed to have very low observer noise, by comparing samples that have sufficiently different ejection fractions. We show that this multi-headed model overcomes the issue of missing labels, and Differential Learning improves the results by providing a less noisy training signal. The second problem is biomarker detection, and disease classification in lung ultrasound videos, to detect Covid-19 infection. A multi-headed attention model is first proposed to detect lung biomarkers (A-lines and B-lines) that appear sporadically in lung ultrasound videos, trained on a private and limited dataset with coarse video-level labels. We then propose knowledge transfer to fine-tune this network on the disease classification task in a public lung ultrasound video dataset. We validate this method's ability to overcome limitations in data and label, through ablation studies and comparison to the state-of-the-art. Our proposed attention-scaled explainability method also visualizes the model’s attention to clinically relevant features.
Additional file 14 of The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants
Creators: name: Fang, Zhongming
name: Wu, Bowen
name: Yuanyuan Ji
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 14 Table S1. List of the primers in this study.
Fingerprints of exceptional points in the survival probability of resonances in atomic spectra
Creators: name: Cartarius, Holger
name: Moiseyev, Nimrod
Publisher: name: arXiv
Year: 2011
Subjects: subject: Chaotic Dynamics (nlin.CD)
subject: Atomic Physics (physics.atom-ph)
subject: FOS: Physical sciences

description: The unique time signature of the survival probability exactly at the exceptional point parameters is studied here for the hydrogen atom in strong static magnetic and electric fields. We show that indeed the survival probability S(t)=||^2 decays exactly as |1-a*t|^2 e^(-Gamma_EP*t/hbar) where Gamma_EP is associated with the decay rate at the exceptional point and a is a complex constant depending solely on the initial wave packet that populates exclusively the two almost degenerate states of the non-Hermitian Hamiltonian. This may open the possibility for a first experimental detection of exceptional points in a quantum system.
description: 6 pages, 3 figures, additional references and comments in the text