cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Providing Secure Access to Sensitive Data
Creators: name: Abowd, John
Publisher: name: Zenodo
Year: 2010

description: Data services are now at a very exciting crossroad. The possibilities for innovative science represented by data merging, mashing, mining and mapping is rapidly expanding, as e-science web 2.0 worlds clamour for Open Data. Yet at the same time the power of these very techniques raises new concerns about data protection, as new techniques make the possibility of identifying individuals ever greater. Following some high profile data disclosure scandals and fearing public and respondent backlash, many data providers are seeking to place even greater restrictions on research access to detailed data. How can research access to data be preserved (and indeed expanded) whilst ensuring data security? This panel will compare and contrast existing options across the globe for providing secure access to sensitive data. Participants will include Tim Mulcahy/Pascal Heus from the NORC Secure Data Enclave (representing direct secure remote access to microdata), Stefan Bender from the German IAB (representing a remote execution service), a representative TBC from the Canadian Research Data Centres (representing networked safe centres), and a representative TBC from the US Census RDCs (representing stand-alone secure centres). The panel will be chaired by Melanie Wright, Director of the UK's new ESRC Secure Data Service.
Figures S1 and S2 from Alpha oscillations govern interhemispheric spike timing coordination in the honeybee brain
Creators: name: Tzvetan Popov
name: Szyszka, Paul
Publisher: name: The Royal Society
Year: 2020
Subjects: subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: 170299 Cognitive Science not elsewhere classified
subject: FOS: Psychology

description: Figure S1: Spontaneous alpha and odor-induced gamma oscillations in the mushroom body require input from the ipsilateral antennal lobe. Figure S2: Spike detection.
Data Access: Some German Thoughts about Past, Present and Future
Creators: name: Bender, Stefan
Publisher: name: Zenodo
Year: 2010

description: Data services are now at a very exciting crossroad. The possibilities for innovative science represented by data merging, mashing, mining and mapping is rapidly expanding, as e-science web 2.0 worlds clamour for Open Data. Yet at the same time the power of these very techniques raises new concerns about data protection, as new techniques make the possibility of identifying individuals ever greater. Following some high profile data disclosure scandals and fearing public and respondent backlash, many data providers are seeking to place even greater restrictions on research access to detailed data. How can research access to data be preserved (and indeed expanded) whilst ensuring data security? This panel will compare and contrast existing options across the globe for providing secure access to sensitive data. Participants will include Tim Mulcahy/Pascal Heus from the NORC Secure Data Enclave (representing direct secure remote access to microdata), Stefan Bender from the German IAB (representing a remote execution service), a representative TBC from the Canadian Research Data Centres (representing networked safe centres), and a representative TBC from the US Census RDCs (representing stand-alone secure centres). The panel will be chaired by Melanie Wright, Director of the UK's new ESRC Secure Data Service.
Additional file 1 of SARS-CoV-2 transmission in educational settings during an early summer epidemic wave in Luxembourg, 2020
Creators: name: Mossong, Joël
name: Mombaerts, Laurent
name: Veiber, Lisa
name: Pastore, Jessica
name: Coroller, Gwenaëlle Le
name: Schnell, Michael
name: Masi, Silvana
name: Huiart, Laetitia
name: Wilmes, Paul
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Neuroscience
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Supplementary Fig. 1. Weekly SARS-CoV-2 test rate (a) and positivity rate (b) by age group in residents in Luxembourg. Schools closed in week 12 and reopened gradually from week 19 onwards.
The making of the Kiriwina to English dictionary
Creators: name: Lawton, Ralph Stanley
Publisher: name: The Australian National University
Year: 2012
Subjects: subject: PL6252.K54 L39 2012
subject: Kiriwinian language Dictionaries English
subject: Kiriwinian language Dialects Trobriand Islands (Papua New Guinea)
subject: Trobriand Islands (Papua New Guinea) Languages

description: This thesis describes the making of the Kiriwina to English dictionary and its structure and content. The dictionary, which presently exists as a computer file containing some 20,000 entries, was compiled over several decades and is the most comprehensive for Kiriwina yet written. There are seven chapters. In the first chapter, after introducing the people's land, language and culture, I give an account of past research into their language. Chapter 2 sketches Kiriwina phonology, and sets out the orthography. Chapter 3 provides a fairly detailed grammar sketch, including an account of the various grammatical categories which appear in dictionary entries and which are integral to the organisation of entries and subentries. The balance of the thesis treats theoretical and especially practical problems encountered in the making of the dictionary. Chapter 4 outlines the history of the project, including my personal history and place in the Kiriwina community in the work of Bible translation. Particular attention is paid to the selection of the Kavataria dialect of Kiriwina as the language documented in the dictionary, and to the level of indigenous participation in this dialect choice. Expected main users of the dictionary are identified. The methods of fieldwork and data collection employed in compilation are detailed, together with the reasons for excluding certain classes of words, such as most proper nouns. Various technical problems encountered in making the dictionary are noted; many of these are elaborated on in later chapters. The remaining three chapters deal with the actual content and organisation of the dictionary. Chapter 5 describes the various types of entries and the ordering of data within entries. The concept of a family of lexemes, related by virtue of sharing one particular lexeme as a primary constituent, is an important feature of the organisation of this dictionary. Chapter 6 defines the key notion of 'lexical unit' or 'sense unit' as opposed to 'lexeme' (a headword which may consist of many sense units) and outlines the criteria used to identify lexicalised multi-morphemic words and multiword expressions. Finally, chapter 7 treats semantic relations between lexical units such as synonymy, antonymy, and inclusion, and the ways these relations are recorded in dictionary entries.
Supplementary Figures from Gradual replacement of wild bees by honeybees in flowers of the Mediterranean Basin over the last 50 years
Creators: name: Herrera, Carlos M.
Publisher: name: The Royal Society
Year: 2020
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Figure S1: Relationship across years over the period 1963-2017 between mean per-country honey production and number of honeybee colonies for the set of N = 13 Mediterranean countries considered.; Figure S2: Frequency distributions of logit(pwb), the logit transform of the proportion of wild bees at flowers in relation to total bees (= wild bees + honeybees), in data from cultivated and wild plants
3D Deep Learning on Medical Images: A Review
Creators: name: Singh, Satya P.
name: Wang, Lipo
name: Gupta, Sukrit
name: Goli, Haveesh
name: Padmanabhan, Parasuraman
name: Gulyás, Balázs
Publisher: name: arXiv
Year: 2020
Subjects: subject: Quantitative Methods (q-bio.QM)
subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Machine Learning (cs.LG)
subject: Image and Video Processing (eess.IV)
subject: FOS: Biological sciences
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: The rapid advancements in machine learning, graphics processing technologies and the availability of medical imaging data have led to a rapid increase in the use of deep learning models in the medical domain. This was exacerbated by the rapid advancements in convolutional neural network (CNN) based architectures, which were adopted by the medical imaging community to assist clinicians in disease diagnosis. Since the grand success of AlexNet in 2012, CNNs have been increasingly used in medical image analysis to improve the efficiency of human clinicians. In recent years, three-dimensional (3D) CNNs have been employed for the analysis of medical images. In this paper, we trace the history of how the 3D CNN was developed from its machine learning roots, we provide a brief mathematical description of 3D CNN and provide the preprocessing steps required for medical images before feeding them to 3D CNNs. We review the significant research in the field of 3D medical imaging analysis using 3D CNNs (and its variants) in different medical areas such as classification, segmentation, detection and localization. We conclude by discussing the challenges associated with the use of 3D CNNs in the medical imaging domain (and the use of deep learning models in general) and possible future trends in the field.
description: Published in Sensors Journal (https://www.mdpi.com/1424-8220/20/18/5097)
LHC Detector Upgrades
Creators: name: Green, Dan
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: The LHC detectors are well into their construction phase. The LHC schedule shows first beam to ATLAS and CMS in 2007. Because the LHC accelerator has begun to plan for a ten fold increase in LHC design luminosity (the SLHC or super LHC) it is none too soon to begin to think about the upgrades which will be required of the present LHC detectors. In particular, the tracking systems of ATLAS and CMS will need to be completely rebuilt. Given the time needed to do the R&D, make prototypes, and construct the new detectors and given the accelerator schedule for the SLHC, work needs to begin rather soon.
description: 14 pages, 11 figures
Pantonyssus santossilvai Martins 2005
Creators: name: MONNÉ, MIGUEL A.
Publisher: name: Zenodo
Year: 2006
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Pantonyssus
Pantonyssus santossilvai

description: 2. Pantonyssus santossilvai Martins, 2005
Type locality— Brazil, Mato Grosso: Aripuanã (Dardanelos). (MZSP.). Distribution — Brazil (Mato Grosso).
 Pantonyssus santossilvai Martins, 2005 a: 150.
description: Published as part of MONNÉ, MIGUEL A., 2006, Catalogue of the Cerambycidae (Coleoptera) of the Neotropical Region. Part III. Subfamilies Parandrinae, Prioninae, Anoplodermatinae, Aseminae Spondylidinae, Lepturinae, Oxypeltinae, and addenda to the Cerambycinae and Lamiinae,, pp. 1-244 in Zootaxa 1212 (1) on page 169, DOI: 10.11646/zootaxa.1212.1.1, http://zenodo.org/record/5064972
The transition to classical chaos in a coupled quantum system through continuous measurement
Creators: name: Ghose, Shohini
name: Alsing, Paul
name: Deutsch, Ivan
name: Bhattacharya, Tanmoy
name: Habib, Salman
name: Jacobs, Kurt
Publisher: name: arXiv
Year: 2003
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Continuous observation of a quantum system yields a measurement record that faithfully reproduces the classically predicted trajectory provided that the measurement is sufficiently strong to localize the state in phase space but weak enough that quantum backaction noise is negligible. We investigate the conditions under which classical dynamics emerges, via continuous position measurement, for a particle moving in a harmonic well with its position coupled to internal spin. As a consequence of this coupling we find that classical dynamics emerges only when the position and spin actions are both large compared to $\hbar$. These conditions are quantified by placing bounds on the size of the covariance matrix which describes the delocalized quantum coherence over extended regions of phase space. From this result it follows that a mixed quantum-classical regime (where one subsystem can be treated classically and the other not) does not exist for a continuously observed spin 1/2 particle. When the conditions for classicallity are satisfied (in the large-spin limit), the quantum trajectories reproduce both the classical periodic orbits as well as the classically chaotic phase space regions. As a quantitative test of this convergence we compute the largest Lyapunov exponent directly from the measured quantum trajectories and show that it agrees with the classical value.
description: 8 pages, 5 figures
Additional file 10 of Role of epigenetics in unicellular to multicellular transition in Dictyostelium
Creators: name: Wang, Simon Yuan
name: Pollina, Elizabeth Ann
name: I-Hao Wang
name: Pino, Lindsay Kristina
name: Bushnell, Henry L.
name: Takashima, Ken
name: Fritsche, Colette
name: Sabin, George
name: Garcia, Benjamin Aaron
name: Greer, Paul Lieberman
name: Greer, Eric Lieberman
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 10. Review history.
NORC Data Enclave
Creators: name: Mulcahy, Tim
name: Heus, Pascal
Publisher: name: Zenodo
Year: 2010

description: Data services are now at a very exciting crossroad. The possibilities for innovative science represented by data merging, mashing, mining and mapping is rapidly expanding, as e-science web 2.0 worlds clamour for Open Data. Yet at the same time the power of these very techniques raises new concerns about data protection, as new techniques make the possibility of identifying individuals ever greater. Following some high profile data disclosure scandals and fearing public and respondent backlash, many data providers are seeking to place even greater restrictions on research access to detailed data. How can research access to data be preserved (and indeed expanded) whilst ensuring data security? This panel will compare and contrast existing options across the globe for providing secure access to sensitive data. Participants will include Tim Mulcahy/Pascal Heus from the NORC Secure Data Enclave (representing direct secure remote access to microdata), Stefan Bender from the German IAB (representing a remote execution service), a representative TBC from the Canadian Research Data Centres (representing networked safe centres), and a representative TBC from the US Census RDCs (representing stand-alone secure centres). The panel will be chaired by Melanie Wright, Director of the UK's new ESRC Secure Data Service.
Piezophidion bordoni Martins 2005
Creators: name: MONNÉ, MIGUEL A.
Publisher: name: Zenodo
Year: 2006
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Piezophidion
Piezophidion bordoni

description: 1. Piezophidion bordoni Martins, 2005
Type locality— Venezuela, Aragua: Loma del Medio (San Casimiro). (MZSP). Distribution— Venezuela.
 Piezophidion bordoni Martins, 2005 a: 92, fig. 90.
description: Published as part of MONNÉ, MIGUEL A., 2006, Catalogue of the Cerambycidae (Coleoptera) of the Neotropical Region. Part III. Subfamilies Parandrinae, Prioninae, Anoplodermatinae, Aseminae Spondylidinae, Lepturinae, Oxypeltinae, and addenda to the Cerambycinae and Lamiinae,, pp. 1-244 in Zootaxa 1212 (1) on page 169, DOI: 10.11646/zootaxa.1212.1.1, http://zenodo.org/record/5064972
Efficient start-to-end 3D envelope modeling for two-stage laser wakefield acceleration experiments
Creators: name: Massimo, Francesco
name: Beck, Arnaud
name: Dérouillat, Julien
name: Grech, Mickael
name: Lobet, Mathieu
name: Pérez, Frédéric
name: Zemzemi, Imen
name: Specka, Arnd
Publisher: name: arXiv
Year: 2019
Subjects: subject: Plasma Physics (physics.plasm-ph)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: Three dimensional Particle in Cell simulations of Laser Wakefield Acceleration require a considerable amount of resources but are necessary to have realistic predictions and to design future experiments. The planned experiments for the Apollon laser also include two stages of plasma acceleration, for a total plasma length of the order of tens of millimeters or centimeters. In this context, where traditional 3D numerical simulations would be unfeasible, we present the results of the application of a recently proposed envelope method, to describe the laser pulse ant its interaction with the plasma without the need to resolve its high frequency oscillations. The implementation of this model in the code Smilei is described, as well as the results of benchmark simulations against standard laser simulations and applications for the design of two stage Apollon experiments.
description: 14 pages, 8 figures
Additional file 1 of Role of epigenetics in unicellular to multicellular transition in Dictyostelium
Creators: name: Wang, Simon Yuan
name: Pollina, Elizabeth Ann
name: I-Hao Wang
name: Pino, Lindsay Kristina
name: Bushnell, Henry L.
name: Takashima, Ken
name: Fritsche, Colette
name: Sabin, George
name: Garcia, Benjamin Aaron
name: Greer, Paul Lieberman
name: Greer, Eric Lieberman
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Supplementary figures S1-S15.
Nature of War : The Political Ecology of the 2020 Nagorno-Karabakh Conflict
Creators: name: Allen, Jeremy M.
Publisher: name: The University of British Columbia
Year: 2022

description: The final report detailing the methods, results, and future directions. The Nagorno-Karabakh conflict has had profound consequences for both the political and physical geography of the South Caucasus region. Since the fighting of the 1990s there has been a relative status quo, with a militarised line of contact separating the two sides; the Armenia-backed Nagorno-Karabakh Republic (Artsakh) and Azerbaijan. This changed on September 27 2020, when intense fighting erupted along the whole of the front, and especially in the south-east. After a month and a half, fighting concluded on 10 November 2020 which saw the implementation of a ceasefire which ceded large portions of the Nagorno-Karabakh (Artsakh) Republic to Azerbaijan. There has yet to be an investigation on the kinds of changes to human and natural systems that the most recent conflict (2020) engendered. In response to this research lacuna, this paper asked whether the effects of the 2020 armed conflict had a significant effect on the region’s agricultural systems. This paper approached the question by examining per-pixel NDVI metrics - derived from Landsat 8 composites from April through June - before and after the conflict. These per-pixel metrics were correlated with conflict data from ACLED. This approach aims to test the hypothesis that areas which witnessed the most intense fighting saw significant drops in NDVI, indicating land fallowness and abandonment. The results from this study indicate that conflict intensity has a significant effect on vegetation health (p-value < 2.2e-16), and supports the hypothesis that conflict leads to a decrease in NDVI, however conflict intensity on its own does not have strong explanatory power for estimating changes in NDVI (R2 0.09667) and future work ought to segment the study area in order to obtain a non-obfuscated regression coefficient (coefficient -0.0057322).
Heralded Two-Photon Entanglement from Probabilistic Quantum Logic Operations on Multiple Parametric Down-Conversion Sources
Creators: name: Pittman, T. B.
name: Donegan, M. M.
name: Fitch, M. J.
name: Jacobs, B. C.
name: Franson, J. D.
name: Kok, P.
name: Lee, H.
name: Dowling, J. P.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: An ideal controlled-NOT gate followed by projective measurements can be used to identify specific Bell states of its two input qubits. When the input qubits are each members of independent Bell states, these projective measurements can be used to swap the post-selected entanglement onto the remaining two qubits. Here we apply this strategy to produce heralded two-photon polarization entanglement using Bell states that originate from independent parametric down-conversion sources, and a particular probabilistic controlled-NOT gate that is constructed from linear optical elements. The resulting implementation is closely related to an earlier proposal by Sliwa and Banaszek [quant-ph/0207117], and can be intuitively understood in terms of familiar quantum information protocols. The possibility of producing a ``pseudo-demand'' source of two-photon entanglement by storing and releasing these heralded pairs from independent cyclical quantum memory devices is also discussed.
description: 5 pages, 4 figures; submitted to IEEE Journal of Selected Topics in Quantum Electronics, special issue on "Quantum Internet Technologies"
Supplementary File 1 from Dietary morphology of two island-endemic murid rodent clades is consistent with persistent, incumbent-imposed competitive interactions
Creators: name: Rowsey, Dakota M.
name: Keenan, Ryan M.
name: Jansa, Sharon A.
Publisher: name: The Royal Society
Year: 2020
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 60301 Animal Systematics and Taxonomy
subject: 60310 Plant Systematics and Taxonomy

description: File containing supplementary methods, results, and references for methods and results, as well as all supplementary figures and supplementary tables S2, S3, and S5.
Piezophidion punctatum Martins 2005
Creators: name: MONNÉ, MIGUEL A.
Publisher: name: Zenodo
Year: 2006
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Piezophidion
Piezophidion punctatum

description: 2. Piezophidion punctatum Martins, 2005
Type locality— Brazil, Rio Grande do Sul: Triunfo. (MCNZ). Distribution — Brazil (Santa Catarina, Rio Grande do Sul), Bolivia.
 Piezophidion punctatum Martins, 2005 a: 93, fig. 89.
description: Published as part of MONNÉ, MIGUEL A., 2006, Catalogue of the Cerambycidae (Coleoptera) of the Neotropical Region. Part III. Subfamilies Parandrinae, Prioninae, Anoplodermatinae, Aseminae Spondylidinae, Lepturinae, Oxypeltinae, and addenda to the Cerambycinae and Lamiinae,, pp. 1-244 in Zootaxa 1212 (1) on page 169, DOI: 10.11646/zootaxa.1212.1.1, http://zenodo.org/record/5064972
Supplemental Figure S1 from Co-occurrence of beaked whale strandings and naval sonar in the Mariana Islands, Western Pacific
Creators: name: Simonis, Anne E.
name: Brownell, Robert L.
name: Thayre, Bruce J.
name: Trickey, Jennifer S.
name: Oleson, Erin M.
name: Huntington, Roderick
name: Baumann-Pickering, Simone
Publisher: name: The Royal Society
Year: 2020
Subjects: subject: Environmental Science
subject: Ecology
subject: FOS: Biological sciences
subject: 60801 Animal Behaviour

description: Schematic spectrogram shows the grouping definition used by analysts for observed MFAS signals. “Packets” may contain multiple frequency-upsweeps, downsweeps and tonal pulses occurring with gaps of less than 0.1 seconds. A packet may actually consist of two packets that occur within 5 seconds of each other.
Researchers exposed: Does archiving data reveal too much?
Creators: name: Bishop, Libby
Publisher: name: Zenodo
Year: 2010

description: The successful development and operation of a data archive depends upon establishing a close relationship with its users. For qualitative data archiving, this involves engaging with researchers to address the specific issues arising from the distinct characteristics of qualitative data; to develop joint solutions to the ethical challenges of data re-use; to encourage researcher up-take of the archive; and to create opportunities for collaboration in areas such as the creation of metadata and data management planning. In the case of Indigenous archives, moreover, the user community is extended to include Indigenous communities as partners in the compilation and repatriation of knowledge and data. In this session, we reflect on the process of engaging with stakeholders and respecting researcher autonomy in the operation of three qualitative data archives: the UK's Qualidata; the Australian Qualitative Archive; and the Aboriginal and Torres Strait Islander Data Archive.
Supplemental Table 1 from Co-occurrence of beaked whale strandings and naval sonar in the Mariana Islands, Western Pacific
Creators: name: Simonis, Anne E.
name: Brownell, Robert L.
name: Thayre, Bruce J.
name: Trickey, Jennifer S.
name: Oleson, Erin M.
name: Huntington, Roderick
name: Baumann-Pickering, Simone
Publisher: name: The Royal Society
Year: 2020
Subjects: subject: Environmental Science
subject: Ecology
subject: FOS: Biological sciences
subject: 60801 Animal Behaviour

description: Major International Navy Training Operations in the Mariana Islands Range Complex from 2003 – 2019.
How to suppress exponential growth -- on the parametric resonance of photons in an axion background
Creators: name: Arza, Ariel
name: Schwetz, Thomas
name: Todarello, Elisa
Publisher: name: arXiv
Year: 2020
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Axion--photon interactions can lead to an enhancement of the electromagnetic field by parametric resonance in the presence of a cold axion background, for modes with a frequency close to half the axion mass. In this paper, we study the role of the axion momentum dispersion as well as the effects of a background gravitational potential, which can detune the resonance due to gravitational redshift. We show, by analytical as well as numerical calculations, that the resonance leads to an exponential growth of the photon field only if (a) the axion momentum spread is smaller than the inverse resonance length, and (b) the gravitational detuning distance is longer than the resonance length. For realistic parameter values, both effects strongly suppress the resonance and prevent the exponential growth of the photon field. In particular, the redshift due to the gravitational potential of our galaxy prevents the resonance from developing for photons in the observable frequency range, even assuming that all the dark matter consists of a perfectly cold axion condensate. For axion clumps with masses below $\sim 10^{-13}\, M_\odot$, the momentum spread condition is more restrictive, whereas, for more massive clumps, the redshift condition dominates.
description: 34 pages, 10 figures
Assessing models of stakeholder participation for the development and acceptance of the Australian Qualitative Archive
Creators: name: Cheshire, Lynda
name: Emmison, Michael
name: Broom, Alex
Publisher: name: Zenodo
Year: 2010

description: The successful development and operation of a data archive depends upon establishing a close relationship with its users. For qualitative data archiving, this involves engaging with researchers to address the specific issues arising from the distinct characteristics of qualitative data; to develop joint solutions to the ethical challenges of data re-use; to encourage researcher up-take of the archive; and to create opportunities for collaboration in areas such as the creation of metadata and data management planning. In the case of Indigenous archives, moreover, the user community is extended to include Indigenous communities as partners in the compilation and repatriation of knowledge and data. In this session, we reflect on the process of engaging with stakeholders and respecting researcher autonomy in the operation of three qualitative data archives: the UK's Qualidata; the Australian Qualitative Archive; and the Aboriginal and Torres Strait Islander Data Archive.
Irregular dust features around intermediate-mass young stars with GPI: signs of youth or misaligned disks?
Creators: name: Laws, Anna S. E.
name: Harries, Tim J.
name: Setterholm, Benjamin R.
name: Monnier, John D.
name: Rich, Evan A.
name: Aarnio, Alicia N.
name: Adams, Fred C.
name: Andrews, Sean
name: Bae, Jaehan
name: Calvet, Nuria
name: Espaillat, Catherine
name: Hartmann, Lee
name: Hinkley, Sasha
name: Isella, Andrea
name: Kraus, Stefan
name: Wilner, David
name: Zhu, Zhaohuan
Publisher: name: arXiv
Year: 2019
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We are undertaking a large survey of over thirty disks using the Gemini Planet Imager (GPI) to see whether the observed dust structures match spectral energy distribution (SED) predictions and have any correlation with stellar properties. GPI can observe near-infrared light scattered from dust in circumstellar environments using high-resolution Polarimetric Differential Imaging (PDI) with coronagraphy and adaptive optics. The data have been taken in J and H bands over two years, with inner working angles of 0.08'' and 0.11'' respectively. Ahead of the release of the complete survey results, here we present five objects with extended and irregular dust structures within 2'' of the central star. These objects are: FU Ori; MWC 789; HD 45677; Hen 3-365; and HD 139614. The observed structures are consistent with each object being a pre-main-sequence star with protoplanetary dust. The five objects' circumstellar environments could result from extreme youth and complex initial conditions, from asymmetric scattering patterns due to shadows cast by misaligned disks, or in some cases from interactions with companions. We see complex U_phi structures in most objects that could indicate multiple scattering or result from the illumination of companions. Specific key findings include the first high-contrast observation of MWC 789 revealing a newly-discovered companion candidate and arc, and two faint companion candidates around Hen 3-365. These two objects should be observed further to confirm whether the companion candidates are co-moving. Further observations and modeling are required to determine the causes of the structures.
Indication of quark deconfinement and evidence for a Hubble flow in 130 and 200 GeV Au+Au collisions
Creators: name: Csanad, M.
name: Csorgo, T.
name: Lorstad, B.
name: Ster, A.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Nuclear Theory (nucl-th)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: Buda-Lund hydro model fits are compared to BRAHMS, PHENIX, PHOBOS and STAR data on identified particle spectra, two-particle Bose-Einstein or HBT correlations, charged particle pseudorapidity distributions and pseudorapidity as well as p_t dependent elliptic flow in sqrt(s_NN) = 130 and 200 GeV Au+Au collisions at RHIC. Preliminary results indicate that 7/8-th of the particle emitting volume is rather cold, with surface temperature of 105 MeV, but the temperature has a distribution and the most central 1/8-th of the volume is superheated to temperatures above the critical value, T(x) > T_c = 172 \pm 3 MeV.
description: 4 pages, talk of M. Csanad at Quark Matter 2004. Slides of the talk are at http://www-rnc.lbl.gov/qm2004/talks/parallel/Tuesday03/MCsanad.pdf (minor corrections, to appear in J. Phys. G)
Supplemental Figure S2 from Co-occurrence of beaked whale strandings and naval sonar in the Mariana Islands, Western Pacific
Creators: name: Simonis, Anne E.
name: Brownell, Robert L.
name: Thayre, Bruce J.
name: Trickey, Jennifer S.
name: Oleson, Erin M.
name: Huntington, Roderick
name: Baumann-Pickering, Simone
Publisher: name: The Royal Society
Year: 2020
Subjects: subject: Environmental Science
subject: Ecology
subject: FOS: Biological sciences
subject: 60801 Animal Behaviour

description: Histogram of peak-to-peak received levels of MFAS packets detected by a human analyst at West (left) and East (right) HARPS. A threshold was set at 115 dB re: 1 μPa for reporting acoustic characteristics (duration, RL, SEL) in Table 3.
WASHINGTON CONSENSUS AND ECONOMIC GROWTH IN DEVELOPING ECONOMIES: THE INDIAN EXPERIENCE
Creators: name: Yua, Henry
name: Epor,, O. S.
name: Ajekwe, Tagher
Publisher: name: ZAP JOURNALS
Year: 2024
Subjects: Breakpoint Least Squares, Economic growth, Economic reforms, India, Liberalization policies, Policy transplant

description: This paper takes a long-term look, (forty-three years; 1980-2023) at macroeconomic management in India in the context of the Washington consensus prescriptions. The study reveals significant structural breaks in India’s economy at different integration orders, indicating that liberalization policies and economic reforms in general have long-term impact on the Indian economy. The Indian economy seems to have experienced a structural break in 2007 due to rapid economic growth and increased global integration stemming from reforms before then. Policy reforms, for example, liberalizing FDI, trade openness, taxes, and exchange rate reforms. Good governance policies by, successive Indian governments further supported these outcomes. Pre-2007 empirical evidence showed that exchange rates, foreign direct investments, and tax revenues supported economic growth, but not significantly. The Indian economy faced challenges due to limited export competitiveness, high import dependency, fluctuating capital flows, and a mismatch between the skills available within the Indian labour force and those required by foreign companies. Post 2007, FDI had significant but negative effects on India’s economic growth. With the foregoing, the paper submits that many of the Washington consensus variables have played an important role in India’s economic growth performance during the period under study. Whether India has deliberately or unconsciously adopted the Washington Consensus Prescriptions should not be of much importance to economic development researchers. This study suggests that India’s economic growth has been significantly boosted by exchange rate reforms since the 1990s. The Reserve Bank should monitor the forex market, build foreign exchange reserves, and promote exports. Accelerating economic growth could be achieved by consolidating fiscal management, improving governance and expanding social spending. Simplifying FDI policy, enhancing private sector attractiveness, and strengthening institutional frameworks are also recommended
Supporting Data Management Across Disciplines
Creators: name: McNeill, Katherine
Publisher: name: Zenodo
Year: 2010

description: Data management is a growing area of service for data archives and university libraries alike. How do data professionals support researchers in their efforts to manage, disseminate, and preserve their research data? What are the roles of librarians and data archivists? This group of presenters will detail how they and their colleagues have been enabling this work at their institution through a variety of activities such as: identifying the needs of researchers, engaging researchers further upstream in the data life cycle, working with researchers and colleagues across disciplines, involving librarians, conducting trainings, developing learning materials and guidelines, and facilitating the implementation of data management plans.
Piezophidion simplex Martins 2005
Creators: name: MONNÉ, MIGUEL A.
Publisher: name: Zenodo
Year: 2006
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Piezophidion
Piezophidion simplex

description: 3. Piezophidion simplex Martins, 2005
Type locality— Ecuador, Victoria (150 m). (MZSP). Distribution — Ecuador.
 Piezophidion simplex Martins, 2005 a: 94, fig. 91.
description: Published as part of MONNÉ, MIGUEL A., 2006, Catalogue of the Cerambycidae (Coleoptera) of the Neotropical Region. Part III. Subfamilies Parandrinae, Prioninae, Anoplodermatinae, Aseminae Spondylidinae, Lepturinae, Oxypeltinae, and addenda to the Cerambycinae and Lamiinae,, pp. 1-244 in Zootaxa 1212 (1) on page 169, DOI: 10.11646/zootaxa.1212.1.1, http://zenodo.org/record/5064972
Analysis and numerics of the chemical master equation
Creators: name: Sunkara, Vikram
Publisher: name: The Australian National University
Year: 2013
Subjects: subject: QC20.7.S8 S86 2013
subject: Stochastic processes
subject: Markov processes Mathematical models
subject: Mathematical physics
subject: Chemistry, Physical and theoretical

description: It is well known that many realistic mathematical models of biological and chemical systems, such as enzyme cascades and gene regulatory networks, need to include stochasticity. These systems can be described as Markov processes and are modelled using the Chemical Master Equation (CME). The CME is a differential difference equation (continuous in time and discrete in the state space) for the probability of a certain state at a given time. The state space is the population count of species in the system. A successful method for computing the CME is the Finite State Projection Method (FSP). The purpose of this literature is to provide methods to help enhance the computation speed of the CME. We introduce an extension to the FSP method called the Optimal Finite State Projection method (OFSP). The OFSP method keeps the support of the approximation close to the smallest theoretical size, which in turn reduces the computation complexity and increases speed-up. We then introduce the Parallel Finite State Projection method (PFSP), a method to distribute the computation of the CME over multiple cores, to allow the computation of systems with a large CME support. Finally, a method for estimating the support a priori is introduced, called the Gated One Reaction Domain Expansion (GORDE). GORDE is the first domain selection method in the CME literature which can guarantee that the support proposed by the method will give the desired FSP approximation error. To prove the accuracy and convergence of these three methods, we explore non-linear approximation theory and the theory of Chemical Master Equations via reaction counts. Using these tools, the proofs of the accuracy and convergence of the three methods are given. Some numerical implementations of the three methods are given to demonstrate experimental speed-up in computing an approximation of the CME.
Classical fields approximation for cold weakly interacting bosons without free parameters
Creators: name: Zawitkowski, Lukasz
name: Brewczyk, Miroslaw
name: Gajda, Mariusz
name: Rzazewski, Kazimierz
Publisher: name: arXiv
Year: 2004
Subjects: subject: Other Condensed Matter (cond-mat.other)
subject: FOS: Physical sciences

description: Classical fields approximation to cold weakly interacting bosons allows for a unified treatment of condensed and uncondensed parts of the system. Until now, however, the quantitative predictions were limited by a dependence of the results on a grid chosen for numerical implementation of the method. In this paper we propose replacing this unphysical ambiguity by an additional postulate: the temperature of the gas at thermal equilibrium should be the same as that of an ideal Bose gas with the same fraction of condensed atoms. As it turns-out, with this additional assumption, nearly all atoms are within the classical fields, thus the method applies to the whole system.
Pulsation in faint blue stars
Creators: name: Byrne, Conor M.
name: Jeffery, C. Simon
Publisher: name: arXiv
Year: 2019
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Following the discovery of blue large-amplitude pulsators (BLAPs) by the OGLE survey, additional hot, high-amplitude pulsating stars have been discovered by the Zwicky Transient Facility. It has been proposed that all of these objects are low-mass pre-white dwarfs and that their pulsations are driven by the opacity of iron-group elements. With this expanded population of pulsating objects, it was decided to compute a sequence of post-common-envelope stellar models using the MESA stellar evolution code and to examine the pulsation properties of low-mass pre-white dwarfs using non-adiabatic analysis with the GYRE stellar oscillation code. By including the effects of atomic diffusion and radiative levitation, it is shown that a large region of instability exists from effective temperatures of 30,000 K up to temperatures of at least 50,000 K and at a wide range of surface gravities. This encompasses both groups of pulsator observed so far, and confirms that the driving mechanism is through iron group element opacity. We make some conservative estimates about the range of periods, masses, temperatures and gravities in which further such pulsators might be observed.
description: 14 pages, 12 figures, accepted for publication in MNRAS
The Data Curation Profile
Creators: name: Carlson, Jake
Publisher: name: Zenodo
Year: 2010

description: Data management is a growing area of service for data archives and university libraries alike. How do data professionals support researchers in their efforts to manage, disseminate, and preserve their research data? What are the roles of librarians and data archivists? This group of presenters will detail how they and their colleagues have been enabling this work at their institution through a variety of activities such as: identifying the needs of researchers, engaging researchers further upstream in the data life cycle, working with researchers and colleagues across disciplines, involving librarians, conducting trainings, developing learning materials and guidelines, and facilitating the implementation of data management plans.
A Natural Language Processing Pipeline of Chinese Free-text Radiology Reports for Liver Cancer Diagnosis
Creators: name: Liu, Honglei
name: Xu, Yan
name: Zhang, Zhiqiang
name: Wang, Ni
name: Huang, Yanqun
name: Hu, Yanjun
name: Yang, Zhenghan
name: Jiang, Rui
name: Chen, Hui
Publisher: name: arXiv
Year: 2020
Subjects: subject: Computation and Language (cs.CL)
subject: FOS: Computer and information sciences

description: Despite the rapid development of natural language processing (NLP) implementation in electronic medical records (EMRs), Chinese EMRs processing remains challenging due to the limited corpus and specific grammatical characteristics, especially for radiology reports. In this study, we designed an NLP pipeline for the direct extraction of clinically relevant features from Chinese radiology reports, which is the first key step in computer-aided radiologic diagnosis. The pipeline was comprised of named entity recognition, synonyms normalization, and relationship extraction to finally derive the radiological features composed of one or more terms. In named entity recognition, we incorporated lexicon into deep learning model bidirectional long short-term memory-conditional random field (BiLSTM-CRF), and the model finally achieved an F1 score of 93.00%. With the extracted radiological features, least absolute shrinkage and selection operator and machine learning methods (support vector machine, random forest, decision tree, and logistic regression) were used to build the classifiers for liver cancer prediction. For liver cancer diagnosis, random forest had the highest predictive performance in liver cancer diagnosis (F1 score 86.97%, precision 87.71%, and recall 86.25%). This work was a comprehensive NLP study focusing on Chinese radiology reports and the application of NLP in cancer risk prediction. The proposed NLP pipeline for the radiological feature extraction could be easily implemented in other kinds of Chinese clinical texts and other disease predictive tasks.
Protosphaerion pictum Martins 2005
Creators: name: MONNÉ, MIGUEL A.
Publisher: name: Zenodo
Year: 2006
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Protosphaerion
Protosphaerion pictum

description: 1. Protosphaerion pictum Martins, 2005
Type locality— Bolivia, Santa Cruz: Achira (4­5 km rodovia para Amboro). (USNM). Distribution — Bolivia.
 Protosphaerion pictum Martins, 2005 a: 325, fig. 250.
description: Published as part of MONNÉ, MIGUEL A., 2006, Catalogue of the Cerambycidae (Coleoptera) of the Neotropical Region. Part III. Subfamilies Parandrinae, Prioninae, Anoplodermatinae, Aseminae Spondylidinae, Lepturinae, Oxypeltinae, and addenda to the Cerambycinae and Lamiinae,, pp. 1-244 in Zootaxa 1212 (1) on page 170, DOI: 10.11646/zootaxa.1212.1.1, http://zenodo.org/record/5064972
Scaling Behavior of the Landau Gauge Overlap Quark Propagator
Creators: name: Zhang, J. B.
name: Bonnet, F. D. R.
name: Bowman, P. O.
name: Leinwebwer, D. B.
name: Williams, A. G.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: The properties of the momentum space quark propagator in Landau gauge are examined for the overlap quark action in quenched lattice QCD. Numerical calculations are done on three lattices with different lattice spacings and similar physical volumes to explore the approach of the quark propagator towards the continuum limit. We have calculated the nonperturbative momentum-dependent wavefunction renormalization function $Z(p^2)$ and the nonperturbative mass function $M(p^2)$ for a variety of bare quark masses and extrapolate to the chiral limit. We find the behavior of $Z(p^2)$ and $M(p^2)$ are in good agreement for the two finer lattices in the chiral limit. The quark condensate is also calculated.
description: 3 pages, Lattice2003(Chiral fermions)
Services, Policy, Guidance and Training: Improving Research Data Management at One Institution
Creators: name: Rice, Robin
Publisher: name: Zenodo
Year: 2010

description: Data management is a growing area of service for data archives and university libraries alike. How do data professionals support researchers in their efforts to manage, disseminate, and preserve their research data? What are the roles of librarians and data archivists? This group of presenters will detail how they and their colleagues have been enabling this work at their institution through a variety of activities such as: identifying the needs of researchers, engaging researchers further upstream in the data life cycle, working with researchers and colleagues across disciplines, involving librarians, conducting trainings, developing learning materials and guidelines, and facilitating the implementation of data management plans.
The resolution of the systems of differential equation using Rosenbrock method
Creators: name: Lakhlifa, Sadek
Publisher: name: Zenodo
Year: 2019
Subjects: systems of differential equation ; Rosenbrock method

description: The resolution of the systems of differential equations \(\begin{equation}\label{PC} \left\{ \begin{array}{ll} \dot{\mathscr{Y}}(t)=\mathscr{A}\mathscr{Y}(t)+\mathscr{B}, \ \ \ t\in[t_{0},t_f], & \hbox{} \\ \mathscr{Y}(t_0)=\mathscr{Y}_0.& \hbox{} \end{array} \right. \end{equation}\) using Rosenbrock method. Inputs : \(\mathscr{A}\) : size matrix (n,n).
 \(\mathscr{B}\) : size matrix (n,s). \(\mathscr{Y}_0\) : size matrix (n,s).
 \(t_0, t_f\) : temps.
 Output: Y(1,:) : solution \(\mathscr{Y}_{1,1}(t)\) of the systems of differential equations \(\ref{PC}\) .
 Author : LAKHLIFA SADEK. E-mail: lakhlifasdek@gmail.com; sadek.l@ucd.ac.ma Last modification : 10/08/2019.

 From the test, this method was found to be faster than the normal method known in Matlab (ode23s) in terms of time to calculate the approximate solution.