cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1: of Identification and characterization of a novel 43-bp deletion mutation of the ATP7B gene in a Chinese patient with Wilsonâ s disease: a case report
Creators: name: Liu, Gang
name: Ma, Dingyuan
name: Cheng, Jian
name: Zhang, Jingjing
name: Luo, Chunyu
name: Sun, Yun
name: Hu, Ping
name: Wang, Yuguo
name: Jiang, Tao
name: Xu, Zhengfeng
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: Virology
subject: Computational Biology

description: Materials and methods. A detailed description of the sample acquisition, sample preparations, Sanger sequencing, alignment, and bioinformatics analyses (DOCX 30 kb)
Data collection process / Data items
Creators: name: Young, Jodi L.
name: Vraa, Derek
name: Junkin, Jennifer
name: Rhon, Dan
Publisher: name: OSF Registries
Year: 2023

description: Studies meeting eligibility criteria will be assessed for prospective registration at clinicaltrials.gov, a priori primary and secondary outcomes, and sample size matching or discrepancy between any registration and the final published study. These primary and secondary outcomes may include pain, functional disability or even a psychosocial questionnaire assessing the change that occurred pre versus post manual therapy. Studies will also be evaluated for the completeness of the plan from registration to actual publication. Agreement between the primary authors will be also assessed for the below items once the information is extracted from the full text review. These items will be gathered and compared: Date of first submittance or registration Last update/change/posted date Actual study start date Actual primary completion date Eligibility criteria Primary outcome(s) Secondary outcome(s) Statistical analysis plan and results Based on the information gathered, studies will be reviewed and the following questions will be answered: A prior registration? Reference to CONSORT or similar statement? Registration lists eligibility criteria? Primary outcome declared in the study? Primary outcome in study identical to registration? Secondary outcomes declared in the study as secondary? Secondary outcomes in study identical to registration? Do the authors report any exploratory analysis? Statistical analysis plan in study identical to registration? Results posted in registration? Do authors address all discrepancies between study and registration in their manuscript?
Additional file 2: of Favorable outcome of patients with lung adenocarcinoma harboring POLE mutations and expressing high PD-L1
Creators: name: Liu, Liang
name: Ruiz, Jimmy
name: O’Neill, Stacey
name: Grant, Stefan
name: Petty, W.
name: Yang, Meng
name: Chen, Kexin
name: Topaloglu, Umit
name: Pasche, Boris
name: Zhang, Wei
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Figure S1. (A) Lollipop plot shows the distribution of POLE mutations in UCEC, LUAD and LUSC cancers. (B) TMB cannot stratify LUAD patients. Figure S2. PD-L1 expression cannot stratify (A) LUAD or (D) LUSC patients without POLE mutations. (B) POLE mutation is associated with higher mutation rates. (C) The combination of POLE mutations and PD-L1 expression is not predictive to LUSC patient outcomes. (E) POLE-mutant patients have slighter higher percentages of TIL. (F) Mut-High group of patients have lower TIL but better survivals. Figure S3. There were 96 genes that were identified to be significantly mutated in Mut-High group but not Mut-Low group with P < 0.05 (Fisher’s exact test). Figure S4. (A) Comparisons of immune-related gene expression in Mut-High and Mut-Low groups. (B) GSEA pathway enrichment and (C) GO function enrichment of the differentially expressed genes in Mut-High and Mut-Low groups. (DOCX 16386 kb)
Generation, spectroscopic characterization and antioxidant activity of tetracoordinate and hexacoordinate complexes of diethylgermanium(IV) of relatively sterically undemanding N-protected amino acids and sterically demanding heterocyclic β-diketones containing radical sensitive Ge-O bond
Creators: name: Maheshwari, Karuna
name: Srivastava, Manish Kumar
name: Saxena, Sanjiv
name: Jain, Asha
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Two new sets of diethylgermanium(IV) complexes of the types Et2GeA2 and Et2GeB2 have been generated by the reactions of diethylgermanium(IV) dichloride with sodium salts of N-protected amino acids (AH) [where AH = , R = -CH(CH3)C2H5: A1H, R = -CH2CH(CH3)2: A2H, R = -CH(CH3)2: A3H] and with sodium salts of sterically demanding heterocyclic β-diketones (BH) [where BH = , R’ = -C6H5: B1H, R’ = -p-(Cl)C6H4: B2H, R’ = -CH3: B3H, R = -C2H5: B4H], respectively in 1:2 molar ratios in refluxing dry benzene. Plausible structures of these complexes were suggested on the basis of physico-chemical and spectroscopic studies. It is suggested that the complexes of the types Et2GeA2 and Et2GeB2 contain four coordinated and six coordinated germanium centers, respectively. The ligands and organogermanium(IV) complexes were evaluated for their free radical scavenging activity by DPPH method. These compounds/complexes demonstrate potential antioxidant activity.
title: The Effects of Copper on Skeletonema Costatum (Greville) Cleve
Creators: name: Jackman, Susanne Sybille
Publisher: name: Old Dominion University
publisherIdentifier: https://ror.org/04zjtrb98
publisherIdentifierScheme: ROR
Year: 1981

description: Copper levels and dominant phytoplankton species composition were examined from six sites in Kings Creek on Virginia's Eastern Shore from March to August 1980. Creek copper levels were determined by an APDCMIBK extraction procedure and ranged from 0.003 to 0.020 mg/1. Diatoms were the dominant phytoplankters with Skeletonema costatum (Greville) Cleve emerging as a major late summer species.

Subsequent laboratory studies involved 96-hour experiments using Skeletonema costatum (clone Skel) grown in enriched natural seawater. The water was collected from Kings Creek and enriched to Guillard and Ryther's (1962) f/2 media levels. Cupric sulfate was added to the experimental culture media from stock solutions yielding final copper concentrations of 11.7 uM, 13.7 uM, 15.7 uM, 17.7 uM and 31.5 uM. The S. costatum cells exposed to copper for 96 hours were harvested, digested and analyzed for cellular copper content. The copper content of control cells was below detection limits, whereas copper exposed cells had copper levels which ranged from 576 to 8929 ug/g dry weight. Cell-free and cell-containing culture media were analyzed for total and chelated copper levels using Chelex-100 in ion-exchange columns. Total and chelated copper levels in cell-free media ranged from 0.004 to 1.781 mg/1 and 0.004 to 0.492 mg/1, respectively, while total and chelated copper levels in cell-containing media ranged from 0.004 to 0.857 mg/1 and 0.004 to 0.466 mg/1, respectively.

Generally, the percentage of chelated copper was slightly higher in cell-containing than in cell-free media, possibly due to Skeletonema costatum modifying the media by releasing extracellular metal binding organics. The copper concentration of S. costatum cells grown in copper spiked media increased with increasing media copper levels. The cellular copper concentration factors ranged from 882 to 9765.
Discovery of ammonia (9,6) masers in two high-mass star-forming regions
Creators: name: Yan, Y. T.
name: Henkel, C.
name: Menten, K. M.
name: Gong, Y.
name: Ott, J.
name: Wilson, T. L.
name: Wootten, A.
name: Brunthaler, A.
name: Zhang, J. S.
name: Chen, J. L.
name: Yang, K.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Molecular maser lines are signposts of high-mass star formation, probing excitation and kinematics of very compact regions in the close environment of young stellar objects and providing useful targets for trigonometric parallax measurements. Only a few NH$_{3}$ (9,6) masers were known so far, and their origin is still poorly understood. Here we aim to find new NH$_{3}$ (9,6) masers to provide a better observational basis to study their role in high-mass star-forming regions. We carried out NH$_{3}$ (9,6) observations toward Cepheus A and G34.26$+$0.15 with the Effelsberg-100 m telescope and the Karl G. Janksy Very Large Array. We discovered new NH$_{3}$ (9,6) masers in Cep A and G34.26$+$0.15, which increases the number of high-mass star-forming regions hosting NH$_{3}$ (9,6) masers from five to seven. Long term monitoring (20 months) at Effelsberg shows that the intensity of the (9,6) maser in G34.26$+$0.15 is decreasing, while the Cep A maser remains stable. Compared to the Effelsberg data and assuming linear variations between the epochs of observation, the JVLA data indicate no missing flux. This suggests that the NH$_3$ (9,6) emission arises from single compact emission regions that are not resolved by the interferometric measurements. As JVLA imaging shows, the NH$_{3}$ (9,6) emission in Cep A originates from a sub-arcsecond sized region, slightly to the west of the peak position of the 1.36\,cm continuum object, HW2. In G34.26$+$0.15, three NH$_{3}$ (9,6) maser spots are observed: one is close to the head of the cometary ultracompact \h2 region C and the other two are emitted from a compact region to the west of the hypercompact \h2 region A. The newly found (9,6) masers appear to be related to outflows. Higher angular resolution of JVLA and VLBI observations are needed to provide more accurate positions and constraints for pumping scenarios.
description: 10 pages, 6 figures, 3 tables. Publicated in A&A
Additional file 2: of Identification and characterization of a novel 43-bp deletion mutation of the ATP7B gene in a Chinese patient with Wilsonâ s disease: a case report
Creators: name: Liu, Gang
name: Ma, Dingyuan
name: Cheng, Jian
name: Zhang, Jingjing
name: Luo, Chunyu
name: Sun, Yun
name: Hu, Ping
name: Wang, Yuguo
name: Jiang, Tao
name: Xu, Zhengfeng
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Table S1. Overview of previously reported pathogenic deletions of the ATP7B gene and use of the FoSTeS/MMBIR mechanism to explain their formations (DOCX 149 kb)
Magnetic resonance-guided radiofrequency ablation of hepatic tumours
Creators: name: Terraz, Sylvain
Publisher: name: Université de Genève
Year: 2013
Subjects: info:eu-repo/classification/ddc/616.0757
Radiofrequency ablation
Magnetic resonance fluoroscopy
Magnetic resonance thermometry
Hepatocellular carcinoma
Liver metastases

description: Radiofrequency (RF) ablation of primary or secondary malignant liver nodules under magnetic resonance (MR) guidance is technically feasible and may be clinically indicated in some situation where tumour conspicuity on ultrasonography (US) and computed tomography (CT) is inadequate for targeting and electrode placement. Although MR-compatible electrodes are now commercially available, MR-guided RF ablation requires implementation of a number of hardware and software modifications that are not included in all current diagnostic MR units. Hardware requirements include an in-room monitor and user interface, adequate surface coils, a RF generator with filtered frequencies and special connecting cables leading into the Faraday cage, and MR-compatible one-way material. Software packages should include dedicated rapid “fluoroscopic” 3D-sequences with T1- or T2-weighting and obtained in two orthogonal oblique planes, in order to allow near real-time visual feedback of the progression of the RF electrode(s) during the targeting procedure. With some experience, the procedure time may be limited to less than an hour. MR-based colour-coded mapping of temperature and energy deposition is technically feasible. However, it is hampered by the susceptibility artefacts generated by the RF electrode and by motion artefacts, and the clinical usefulness of this form of monitoring has yet to be proven. Signal loss on T2-weighted images and on contrast-enhanced T1-weighted images may be used to evaluate the ablation zone with MR imaging immediately after treatment. Clinical effectiveness of MR-guided RF ablation is similar to ablation performed under US or CT guidance.
ANDRÉ KARAM TRINDADE.pdf
Creators: name: Trindade, André Karam
Publisher: name: figshare
Year: 2017
Subjects: subject: Law
subject: FOS: Law

description: This essay is part of the tradition of studies in Law and Literature, based on the premise that certain literary narratives are more important for the study of law than many legal treaties and manuals. It addresses the issue of human emancipation and power in literary narratives. In order to do so, this paper analyzes the novel The reader, by writer and jurist Bernhard Schlink, whose background allows a deep reflection on Western Law after Auschwitz, involving problems that marked the philosophy of Law of the second post-war, such as judgment, morality, guilt and shame, among others.
Profile of Assessment Practices in Irish Higher Education
Creators: name: :: National Forum For The Enhancement Of Teaching And Learning In Higher Education
Publisher: name: figshare
Year: 2017
Subjects: subject: Education
subject: 130103 Higher Education
subject: FOS: Educational sciences

description: This report aims to inform the current enhancement theme of the National Forum by profiling documented assessment practices across a sample of 30 undergraduate degree programmes. Further, the study aims to explore whether and how assessment practices differ between fields of study and to share insights regarding students’ experiences of assessment across Irish higher education.
Additional file 3: of VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis
Creators: name: Cornwell, MacIntosh
name: Vangala, Mahesh
name: Taing, Len
name: Herbert, Zachary
name: KĂśster, Johannes
name: Li, Bo
name: Sun, Hanfei
name: Li, Taiwen
name: Zhang, Jian
name: Qiu, Xintao
name: Pun, Matthew
name: Jeselsohn, Rinath
name: Brown, Myles
name: Liu, X.
name: Long, Henry
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Hematology

description: Figure S2. (a) Example of the VIPER project folder. The main components are VIPER, DATA, and ANALYSIS with the input files config.yaml and metasheet.csv. (b) Expanded ANALYSIS folder illustrating the output of VIPER. The plots folder here is expanded to illustrate how the output assumes a simple hierarchical structure, and that each of the clustering figures are associated with a text file containing the underlying information. (PDF 212Â kb)
Quasiparticle focusing of bound states in two-dimensional $s$-wave superconductors
Creators: name: Uldemolins, Mateo
name: Mesaros, Andrej
name: Simon, Pascal
Publisher: name: arXiv
Year: 2022
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: A magnetic impurity on a superconducting substrate induces in-gap Yu-Shiba-Rusinov (YSR) bound states, whose intricate spatial structure crucially influences the possibilities of engineering collective impurity states. By means of a saddle-point approximation we study the scattering processes giving rise to YSR states in gapped, two-dimensional superconductors. Further, we develop a theory which relates through a simple analytical expression an arbitrary energy dispersion of normal electrons in a two-dimensional host to the spatial features of the YSR states. Namely, we find that flatter segments of the Fermi surface with large Fermi velocity enhance the local density of states (LDOS) around the impurity. Our analytical approximation is quantitatively accurate against tight-binding calculations on various lattices with different Fermi surfaces, and it allows to predict the shape and orientation of YSR states observed in scanning tunneling spectroscopy experiments. We illustrate our results with a model of $\mathrm{NbSe}_2$.
description: 14 pages, 5 figures
An unambiguous cloudiness index for nonwovens
Creators: name: Godehardt, Michael
name: Moghiseh, Ali
name: Oetjen, Christine
name: Ohser, Joachim
name: Schladitz, Katja
Publisher: name: arXiv
Year: 2022
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Image and Video Processing (eess.IV)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: I.4.7; I.4.9
subject: 62M40, 62P30

description: Cloudiness or formation is a concept routinely used in industry to address deviations from homogeneity in nonwovens and papers. Measuring a cloudiness index based on image data is a common task in industrial quality assurance. The two most popular ways of quantifying cloudiness are based on power spectrum or correlation function on the one hand or the Laplacian pyramid on the other hand. Here, we recall the mathematical basis of the first approach comprehensively, derive a cloudiness index, and demonstrate its practical estimation. We prove that the Laplacian pyramid as well as other quantities characterizing cloudiness like the range of interaction and the intensity of small-angle scattering are very closely related to the power spectrum. Finally, we show that the power spectrum is easy to be measured image analytically and carries more information than the alternatives.
Practical considerations for the effect of finite coverage on the azimuthal dependence of global spin alignment
Creators: name: Zhang, Chao
name: Yang, Peng
name: Liu, Feng
name: Tu, Biao
Publisher: name: arXiv
Year: 2022
Subjects: subject: Nuclear Theory (nucl-th)
subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: The global spin alignment of vector mesons is a powerful probe to study the vorticity field of the system produced in non-central relativistic heavy-ion collisions. Since the experimental observables of global spin alignment are sensitive to many factors, proper corrections are need to be taken care of when measuring the global spin alignment of vector mesons. In this paper, we propose a method to correct the effect of finite pseudo-rapidity coverage when extract the azimuthal dependence of spin alignment parameter $ρ_{00}$. The effects of the finite pseudo-rapidity coverage on the azimuthal dependence of $ϕ$ meson spin alignment and the potentially exist intrinsic spin alignment effects are taken into consideration. The method presented in this paper is verified in a Monte-Carlo simulation, it allows the measurements of azimuthal dependence of global spin alignment to be conducted properly and accurately.
BakerRipley and League of Women Voters Houston GOTV
Creators: name: Hardin, Shana
name: Chapa, Samantha
Publisher: name: OSF Registries
Year: 2023
Subjects: subject: American Politics
subject: Political Science
subject: FOS: Political science
subject: Social and Behavioral Sciences
subject: GOTV

description: This is a field experiment to be conducted on the City of Houston 2023 Mayoral election. The sample population is low propensity voters in five City of Houston neighborhoods/communities: East End, East Aldine, Gulfton, the Hobby Area, and Near Northside. The treatment in four of the neighborhoods consists of mailers tailored to the interests of each neighborhood. The control will be normal mailers that BakerRipley typically sends out in an election, with basic information on voting. In tailoring the treatment to each neighborhood, we hope to prime a sense of place-based identity, or positive affect toward one's immediate community. Positive affect toward one's community, will in turn prompt prospective voters to turn out to the polls due to their attachment to their community. Throughout the pre-registration, we refer to this theory and the corresponding hypotheses as our place based theory. We are also testing the effects of multiple contact via mail. In the Hobby and East Aldine neighborhoods, we will be sending out both postcards reminding individuals to vote as well as voter guides. This means in the Hobby and East Aldine neighborhoods, we will have four treatment groups. This is a different theory from the theory in the first paragraph, but we include it in the same preregistration because we will be using the same data for all papers. This will be refered to as our mutliple mailer theory. Lastly, we will test the effectiveness of the voter guide, or rather the effectiveness of providing low propensity voters with candidate information, in an additional neighborhood, Near Northside. In this neighborhood, there will only be two experimental groups. One group will receive the voter guide, and one group will receive no voter guide. This is also a separate theory, using the same data. This will be referred to as our election information theory.
Neutron Stars with Baryon Number Violation, Probing Dark Sectors
Creators: name: Berryman, Jeffrey M.
name: Gardner, Susan
name: Zakeri, Mohammadreza
Publisher: name: arXiv
Year: 2022
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: The neutron lifetime anomaly has been used to motivate the introduction of new physics with hidden-sector particles coupled to baryon number, and on which neutron stars provide powerful constraints. Although the neutron lifetime anomaly may eventually prove to be of mundane origin, we use it as motivation for a broader review of the ways that baryon number violation, be it real or apparent, and dark sectors can intertwine and how neutron star observables, both present and future, can constrain them.
description: 81 pages, 16 figures. Invited contribution to special issue of Symmetry, "The Neutron Star-Dark Matter Connection: Bridge Through the Baryon Symmetry Violation." Updated to reflect accepted version
Geochemistry of mafic–ultramafic magmatism in the Western Ghats belt (Kudremukh greenstone belt), western Dharwar Craton, India: implications for mantle sources and geodynamic setting
Creators: name: Chandan-Kumar B
name: A. G. Ugarkar
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Cancer
subject: Inorganic Chemistry

description: Western Ghats Belt of western Dharwar Craton is dominated by metavolcanic rocks (komatiites, high-magnesium basalts (HMBs), basalts, boninites) with occasional metagabbros. This rock-suite has undergone post-magmatic alteration processes corresponding to greenschist- to lower-amphibolite facies conditions. Komatiites are Al-depleted, characterized by lower Al2O3/TiO2 and high CaO/Al2O3. Their trace element distribution patterns suggest most of the primary geochemical compositions are preserved with minor influence of post-magmatic alteration processes and negligible crustal contamination. Chemical characteristics of Al-depleted komatiites imply their derivation from deeper upper mantle with/without garnet involvement. HMBs and basalts are differentiated based on their magnesium content. Basalts and occasionally associated gabbroic sills have similar geochemical characteristics. HMB are characterized by light rare earth element (LREE) enrichment, with significant Nb–Ta and Zr negative anomalies. Basalts and associated gabbros display tholeiitic affinity, with LREE-enriched to slightly fractionated heavy rare earth element (HREE) patterns. Boninites are distinctive in conjunction of low abundances of incompatible elements with respect to the studied komatiites. Chondrite-normalized REE patterns of boninites show relative enrichment in LREE and HREE with respect to MREE. Prominent island arc signatures are evident in HMB, basalts, boninites, and gabbros in terms of their Nb–Ta and Zr–Hf negative anomalies, LREE enrichment and HFSE depletion. It is suggested that these HMB–basalts (associated gabbros)–boninites are the products of arc magmatism. Their REE chemistry attests to a gradual transition in melting depth varying between spinel and garnet stability field in an arc regime. The close spatial association but contrasting elemental characteristics of komatiites and HMB–basalts–boninites can be explained by a plume-arc model, in which the ~3.0 Ga komatiites are considered to be the products of plume volcanism in an oceanic setting, while the HMB, basalts, boninites, and associated gabbros were emplaced in a continental margin setting around 2.8–2.7 Ga.
Rational design and first-principles studies of phenothiazine-based dyes for dye-sensitised solar cells
Creators: name: Saranya Govindarajan
name: Shiwu Gao
name: Cai, Wei
name: ChiYung Yam
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Biophysics
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: We investigate a series of phenothiazine (PT)-based organic dyes by adopting different donors and different donor substitution positions as photosensitisers for application in dye-sensitised solar cells (DSSCs). First-principles calculations reveal systematic improvements of key parameters including light-harvesting efficiency, redox potential, electron injection and non-linear optical properties with donor substitutions. The non-planar structure also suppresses dye aggregation and reduces the rate of internal charge recombination. In particular, photosensitisers with combination of donor functional groups show outstanding performance on these key parameters. This study demonstrates that PT-based dyes with the studied donor groups could serve as excellent candidates of photosensitisers for future DSSC applications.
Additional file 4: of VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis
Creators: name: Cornwell, MacIntosh
name: Vangala, Mahesh
name: Taing, Len
name: Herbert, Zachary
name: Köster, Johannes
name: Li, Bo
name: Sun, Hanfei
name: Li, Taiwen
name: Zhang, Jian
name: Qiu, Xintao
name: Pun, Matthew
name: Jeselsohn, Rinath
name: Brown, Myles
name: Liu, X.
name: Long, Henry
Publisher: name: figshare
Year: 2018
Subjects: Space Science
Molecular Biology
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Information Systems not elsewhere classified
Science Policy

description: Figure S1. Graphical overview of the computational steps performed by VIPER processing a single fastq file. The nodes of the graph represent the execution of a rule and a directed edge between node A and B means that the rule underlying node B needs the output of node A as an input. A path in the graph represents a sequence of jobs that have to be executed serially, but disjoint paths can be run in parallel. This specific directed acyclic graph (DAG) was automatically generated by VIPER based on the directive to run the rule named ‘target’, using a single fastq file as input. (PDF 436 kb)
Coupled dark energy model inspired from general conformal transformation
Creators: name: Thipaksorn, Wittaya
name: Sapa, Stharporn
name: Karwan, Khamphee
Publisher: name: arXiv
Year: 2022
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We study the coupled dark energy model constructed from the general conformal transformation in which the coefficient of the conformal transformation depends on both the scalar field and its kinetic term. Under this conformal transformation, the action for subclass of Degenerate Higher-Order Scalar-Tensor (DHOST) theories is related to the Einstein-Hilbert action. The evolution of the background universe has the scaling fixed point which corresponds to acceleration of the universe at late time. For the choices of parameters which make the late-time scaling point stable, the fixed point corresponding to $ϕ$-matter-dominated-era ($ϕ$MDE) is a saddle point, and the universe can evolve from radiation dominated epoch through $ϕ$MDE before reaching the scaling point at late time with the cosmological parameters which satisfy the observational bound. During the $ϕ$MDE, the effective equation of state parameter is slightly positive, so that one of possible mechanisms for alleviating the $H_0$ tension can be achieved. In this coupled dark energy model, the effective gravitational coupling for dark matter perturbations on small scales can be smaller than that in the $Λ$CDM model. Therefore a growth rate of the dark matter perturbations is suppressed compare with the $Λ$CDM model, which implies that the $σ_8$ tension could be alleviated.
description: 25 pages, 7 figures, 2 tables, references added, accepted for publication in PRD, texts relevant to momentum transfer are modified
Improved facile synthesis of α-amino phosphonates by the reaction of α-amido sulfones with dialkyl trimethyl silyl phosphites catalyzed by Fe(III) chloride
Creators: name: Boyapati Veeranjaneyulu
name: Biswanath Das
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Marine Biology

description: An improved efficient synthesis of α-amino phosphonates has been discovered by the reaction of N-benzyloxycarbonylamino sulfones with dialkyl trimethyl silyl phosphites in the presence of FeCl3 as a catalyst. The products were formed in high yields (86–94%) within 2–4 h. The catalyst is inexpensive, easily available, and highly active. The unreacted dialkyl trimetyl silyl phosphites can easily be removed from the products due to their low boiling points. The sulfones can conveniently be prepared and are generally stable.
Bayesian inference of finite-nuclei observables based on the KIDS model
Creators: name: Xu, Jun
name: Papakonstantinou, Panagiota
Publisher: name: arXiv
Year: 2022
Subjects: subject: Nuclear Theory (nucl-th)
subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: Bayesian analyses on both isoscalar and isovector nuclear interaction parameters are carried out based on the Korea-IBS-Daegu-SKKU (KIDS) model under the constraints of nuclear structure data of $^{208}$Pb and $^{120}$Sn. Under the constraint of the neutron-skin thickness, it is found that incorporating the curvature parameter $K_{sym}$ of nuclear symmetry energy as an independent variable significantly broadens the posterior probability distribution function (PDF) of the slope parameter $L$, and affects the related correlations. Typically, the anticorrelation between $L$ and the symmetry energy at saturation density disappears, while a positive correlation between $L$ and $K_{sym}$ is observed. Under the constraint of the isoscalar giant monopole resonance (ISGMR), incorporating the skewness parameter as an independent variable also significantly broadens the posterior PDF of the nuclear matter incompressibility $K_0$. Even with the broad uncertainties of higher-order parameters of the equation of state (EOS), robust constraints of $L<90$ MeV and $K_0<270$ MeV are obtained. Our study quantifies the consistency between the constraints on $L$ from the neutron-skin data of PREXII and isovector giant dipole resonance (IVGDR) data, and the constraints on $K_0$ from the data of ISGMR in $^{208}$Pb and $^{120}$Sn.
description: 18 pages, 17 figures
Clinicians’ adherence to international guidelines in the clinical care of adults with inflammatory bowel disease
Creators: name: Jackson, Belinda D.
name: Con, Danny
name: Liew, Danny
name: Cruz, Peter De
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Medicine
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Background: Although evidence-based guidelines have been developed for inflammatory bowel disease (IBD), the extent to which they are followed is unclear. The objective of this study was to review clinicians’ adherence to international IBD guidelines. Methods: Retrospective data collection of patients attending a tertiary Australian hospital IBD clinic over a 12-month period. Management practices were audited and compared to ECCO (European Crohn’s and Colitis Organization) guidelines. Results: Data from 288 patients were collected: 47% (136/288) male; mean age 43; 140/288 (49%) patients had ulcerative colitis (UC); 145/288 (50%) patients had Crohn’s disease (CD); 3/288 (1%) patients had IBD-unclassified (IBD-U). Patient care was undertaken by gastroenterologists, trainees and general practitioners. Disease Management: Overall adherence to disease management guidelines occurred in 204/288 (71%) of patient encounters. Discrepancies between guidelines and management were found in: 25/80 (31%) of patients with UC in remission receiving oral 5-aminosalicyclates (5-ASAs) as maintenance therapy, and; 46/110 (42%) of patients with small bowel and/or ileo-cecal CD receiving 5-ASA. Preventive Care: Adherence to ≥1 additional component of preventive care was observed in 73/288 (25%) of patient encounters: 12/133 (9%) on thiopurines underwent annual skin checks; 61/288 (21%) of patients with IBD underwent a bone scan; 46/288 (16%) patients were reminded to have their influenza vaccine. Psychological care: Assessment of psychological wellbeing was undertaken in only 16/288 (6%) of patients. Conclusions: There remains a gap between adherence to international guidelines and clinical practice. Standardizing practice using evidence-based clinical pathways may be a strategy towards improving the quality of IBD outpatient management.
Additional file 6: of VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis
Creators: name: Cornwell, MacIntosh
name: Vangala, Mahesh
name: Taing, Len
name: Herbert, Zachary
name: KĂśster, Johannes
name: Li, Bo
name: Sun, Hanfei
name: Li, Taiwen
name: Zhang, Jian
name: Qiu, Xintao
name: Pun, Matthew
name: Jeselsohn, Rinath
name: Brown, Myles
name: Liu, X.
name: Long, Henry
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Environmental Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Developmental Biology
subject: Marine Biology

description: Figure S4. (a) Code snippet from the config.yaml file demonstrating the addition of a boolean flag indicating whether or not to run the genome wide SNP scan. (b) Code snippet from the snp.snakefile demonstrating the addition of rules built off of existing output (aligned STAR BAM files) and yielding additional output (genome-wide SNP scans). (PDF 104Â kb)
Fabriquer des territoires : Utopies, modèles et projets
Creators: name: Giraut, Frédéric
Publisher: name: Univ. Paris 1 Panthéon-Sorbonne
Year: 2005
Subjects: info:eu-repo/classification/ddc/320

description: The present thesis offers a set of theoretical reflections on postmodern and postcolonial territorial restructuring. It is mainly based on fifteen years of scientific research on the demarcation processes at local and provincial levels in African contexts (South Africa, Morocco and Niger) and at intermunicipal level in France. A broad international bibliography on the issues of demarcation and territorial engineering is also used. Chapters deal with specific entries: the arguments on the choice of new provincial capital cities and county-towns; territorial solutions and innovations introduced in borderlands institutional and local government design; the evolution of the optimal territorial pattern in the public policies of spatial planning and devolution. Lastly some laws and trends arising from this work are applies to territorial restructuring beyond local and national political clouts.
Edge Wetting: Steady State of Rivulets in Wedges
Creators: name: Kubochkin, Nikolai
name: Gambaryan-Roisman, Tatiana
Publisher: name: arXiv
Year: 2022
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The geometry of rough, textured, fractured and porous media is topologically complicated. Those media are commonly represented by bundles of capillary tubes when modeled. However, angle-containing geometries can serve as a more realistic portrayal of their inner structure. A basic element abidingly inherent to all of them is an open wedge-like channel. The classical theory of capillarity ignoring intermolecular interactions implies that liquid entering the wedge must propagate indefinitely along its spine when the liquid-gas interface is concave. The latter is well-known as a Concus-Finn condition. In the present paper, we show that steady-state rivulets violating Concus-Finn condition can be formed in such channels when the surface forces are taken into account. We present a simple model based on the disjoining pressure approach and analyze the shape of the rivulets in the wedges. Besides, we consider a case when the walls of the wedge are soft and can be deformed by the liquid.
Procedure
Creators: name: Gillin, Laura
Publisher: name: OSF Registries
Year: 2018

description: Participants from the subject pool will be able to read the description of the study, and should they choose to participate, will click the link to the survey, at which point they will be presented with an online consent form. At the end of the form, potential participants will have the option to either exit or agree to continue with the survey. Participants recruited from social media websites will be given a description of the study with a link to the survey at the end of the post and will proceed as described prior.
Efficient copper-catalyzed N-arylation of NH-containing heterocycles and sulfonamides with arenediazonium tetrafluoroborates
Creators: name: Ouyang, Yu-Qing
name: Yang, Zhen-Hua
name: Chen, Zhong-Hui
name: Sheng-Yin Zhao
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Biochemistry
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology

description: A practical copper-catalyzed N-arylation of NH-containing heterocycles with arenediazonium tetrafluoroborates has been developed using CuCl as catalyst and K2CO3 as additive under ligand-free conditions. This reaction system has wide substrate scope including imides, 1H-pyrazole, 1H-tetrazoles, 1,2-benzisothiazol-3(2H)-one, and related sulfonamides and gives moderate to excellent yields (up to 95%) of the desired products. This strategy is very general, simple, environmentally friendly, and tolerant of oxygen.
title: Assessing the perceived effectiveness of suicide postvention in England, from the perspective of beneficiaries that utilise the service and key stakeholders.
Creators: name: Abbate, L
Publisher: name: Liverpool John Moores University
Year: 2024

description: Background: Postvention services aim to support individuals bereaved by suicide, prevent further suicides and reduce adverse mental health in this at-risk population. Aim: The aim of this study was to evaluate the perceived effectiveness of postvention services in the UK and develop a model for anyone seeking to create a new postvention service. Methods: A mixed methods design was used to assess perceived effectiveness and develop recommendations. Fifty-eight interviews were conducted with nine services, including beneficiaries, commissioners, service Chief Executive Officers (CEOs), referrers, and Suicide Liaison Employees (SLOs). Interviews were analysed twice using thematic analysis, once to generate themes from each service and then again to create themes from each participant group. Two services’ audit data on beneficiary demographics and evaluation outcome measures (CORE-10 and SWEMWBS) were analysed using paired samples t-tests. Results: This study found that well-being significantly improved between the initial assessment and recent assessment. Themes that emerged included: 1) “what do you need from us?”; 2) accessibility of postvention; 3) the ongoing debate surrounding data collection; 4) sustainability and longevity; 5) Shared learning of challenges and improvements for postvention services. Conclusion: Postvention services in England are having a positive impact on people bereaved by suicide and the wider community, by offering a tailor-made service that have adopted a public health approach to align postvention with suicide prevention programs. However, the longevity of these services was a concern due to funding and lack of evidence of their effectiveness. Evaluation would evidence their value and support the development of new services. Postvention services could be cost- effective in reducing the use of statutory services for people bereaved by suicide and reducing further suicides. A model for new services and further research is discussed.
An Efficient Copper-Catalyzed N-Arylation of NH-Containing Heterocycles and Sulphonamides with Arenediazonium Tetrafluoroborates
Creators: name: Ouyang, Yu-Qing
name: Yang, Zhen-Hua
name: Chen, Zhong-Hui
name: Sheng-Yin Zhao
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Biochemistry
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology

description: A practical copper-catalyzed N-arylation of NH-containing heterocycles with arenediazonium tetrafluoroborates has been developed using CuCl as catalyst, K2CO3 as additive under ligand-free conditions. This reaction system has wide substrate scope including imides, 1H-pyrazole, 1H-tetrazoles, 1,2-benzisothiazol-3(2H)-one and related sulfonamides and gives moderate to excellent yields (up to 95%) of the desired products. This strategy is very general, simple, environmentally friendly, and tolerant of oxygen.
An improved facile synthesis of α-amino phosphonates by the reaction of α-amido sulfones with dialkyl trimethyl silyl phosphites catalyzed by Fe (III) chloride
Creators: name: Veeranjaneyulu Boyapati
name: Biswanath Das
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Marine Biology

description: An improved efficient synthesis of α-amino phosphonates has been discovered by the reaction of N-benzyloxycarbonylamino sulfones with dialkyl trimethyl silyl phosphites in the presence of FeCl3 as a catalyst. The products were formed in high yields (86-94%) within 2-4 h. The catalyst is inexpensive, easily available and highly active. The unreacted dialkyl trimetyl silyl phosphites can easily be removed from the products due to their low boiling points. The sulfones can conveniently be prepared and are generally stable.
Choline chloride–ZnCl2: Recyclable and efficient deep eutectic solvent for the [2+3] cycloaddition reaction of organic nitriles with sodium azide
Creators: name: Swapnil A. Padvi
name: Dalal, Dipak S.
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Computational Biology

description: Herein we report first time choline chloride–zinc chloride based deep eutectic solvent is a green and efficient reaction medium for the [2+3] cycloaddition reaction of organic nitriles with sodium azide to afford the corresponding 5-substituted 1H-tetrazoles. The present method provides an environment-friendly route, short reaction times with excellent yields, safe process, and simple workup which make this method an attractive and useful contribution to the existing conventional processes for the synthesis of 5-substituted 1H-tetrazoles.
Additional file 7: of VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis
Creators: name: Cornwell, MacIntosh
name: Vangala, Mahesh
name: Taing, Len
name: Herbert, Zachary
name: Köster, Johannes
name: Li, Bo
name: Sun, Hanfei
name: Li, Taiwen
name: Zhang, Jian
name: Qiu, Xintao
name: Pun, Matthew
name: Jeselsohn, Rinath
name: Brown, Myles
name: Liu, X.
name: Long, Henry
Publisher: name: figshare
Year: 2018
Subjects: Space Science
Molecular Biology
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Information Systems not elsewhere classified
Developmental Biology

description: Implementation and Installation [43–45] (Additional file 8: Figure S3). (DOCX 15 kb)