cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Microvelia limaiana Drake 1951
Creators: name: Kment, Petr
name: Kolínová, Zdislava
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Veliidae
Microvelia
Microvelia limaiana

description: Microvelia limaiana Drake, 1951
 Microvelia limaiana Drake, 1951b: 79−80 (original description).
Eight paratypes are deposited in NMPC:
PARATYPE (J apter.): ‘Nova Teutonia / St. Catarina / Bras. [p] VI. 10 [hw] 1950 / Fritz Plaumann [p] / PARATYPE / By C. J. Drake [p] / Microvelia / limaiana [hw, red label] // Microvelia / limaiana / Drak. [hw, white label with black frame submarginally] // J|J|J [p]’.
PARATYPES (5 JJ apter.): ‘Nova Teutonia / St. Catarina / Bras. [p] VI. 10 [hw] 1950 / Fritz Plaumann [p] // PARA- TYPE / By C. J. Drake [p] / Microvelia / limaiana [hw, red label] // J [p]’.
PARATYPES (2 ♀♀: 1 ♀ apter., 1 ♀ macr.): ‘Nova Teutonia / St. Catarina / Bras. [p] VI. 10 [hw] 1950 / Fritz Plaumann [p] // PARATYPE / By C. J. Drake [p] / Microvelia / limaiana [hw, red label] // ♀ | ♀ | ♀ [p]’.
 Current status. Valid species, not attributed to any subgenus (see HECKMAN 2011, MOREIRA et al. 2011).
description: Published as part of Kment, Petr & Kolínová, Zdislava, 2013, Catalogue of type specimens of true bugs (Hemiptera: Heteroptera) deposited in the National Museum, Prague, Czech Republic, pp. 821-890 in Acta Entomologica Musei Nationalis Pragae 53 (2) on pages 844-845, DOI: 10.5281/zenodo.5740731
Stellar Proper Motions in the Orion Nebula Cluster
Creators: name: Kim, Dongwon
name: Lu, Jessica R.
name: Konopacky, Quinn
name: Chu, Laurie
name: Toller, Elizabeth
name: Anderson, Jay
name: Theissen, Christopher A.
name: Morris, Mark R.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: The Orion Nebula Cluster (ONC) is the nearest site of ongoing massive star formation, which allows us to study the kinematics and dynamics of the region in detail and constrain star formation theories. Using HST ACS/WFPC2/WFC3IR and Keck II NIRC2 data, we have measured the proper motions of 701 stars within an $\sim6'\times6'$ field of view around the center of the ONC. We have found more than 10 escaping star candidates, concentrated predominantly at the core of the cluster. The proper motions of the bound stars are consistent with a normal distribution, albeit elongated North-South along the Orion filament, with proper motion dispersions of $(σ_{μ,α^*}, σ_{μ,δ}) = (0.83\pm0.02,\,1.12\pm0.03)$ mas yr$^{-1}$ or intrinsic velocity dispersions of $(σ_{v,α^*}, σ_{v,δ}) = (1.57\pm0.04,\,2.12\pm0.06)$ km s$^{-1}$ assuming a distance of 400 pc to the ONC. The cluster shows no evidence for tangential-to-radial anisotropy. Our velocity dispersion profile agrees with the prediction from the observed stellar + gas density profile from Da Rio et al. (2014), indicating that the ONC is in virial equilibrium. This finding suggests that the cluster was formed with a low star formation efficiency per dynamical timescale based on comparisons with current star formation theories. Our survey also recovered high-velocity IR sources BN, x, and n in the BN/KL region. The estimated location of the first two sources $\sim500$ years ago agrees with that of the radio source I, consistent with their proposed common origin from a multi-stellar disintegration. However, source n appears to have a small proper motion and is unlikely to have been involved in the event.
description: 20 pages, 11 figures, 5 tables. AJ, in press. Changes w.r.t v1: the mass of source I in Section 5.3, the order of tables, and minor language corrections
A rev1–vpu polymorphism unique to HIV-1 subtype A and C strains impairs envelope glycoprotein expression from rev–vpu–env cassettes and reduces virion infectivity in pseudotyping assays
Creators: name: Anderson, Jeffrey A.
name: Ping, Li-Hua
name: Decker, Julie M.
name: Keele, Brandon F.
name: Grayson, Truman
name: Williamson, Carolyn
name: Hahn, Beatrice H.
name: McPherson, David T.
name: Swanstrom, Ronald
name: Parrish, Nicholas F.
name: Shaw, George M.
name: Kraus, Matthias H.
name: Salazar-Gonzalez, Jesus F.
name: Shaw, Katharina S.
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2010

description: Functional studies of HIV-1 envelope glycoproteins (Envs) commonly include the generation of pseudoviruses, which are produced by co-transfection of rev-vpu-env cassettes with an env-deficient provirus. Here, we describe six Env constructs from transmitted/founder HIV-1 that were defective in the pseudotyping assay, although two produced infectious virions when expressed from their cognate proviruses. All of these constructs exhibited an unusual gene arrangement in which the first exon of rev (rev1) and vpu were in the same reading frame without an intervening stop codon. Disruption of the rev1-vpu fusion gene by frameshift mutation, stop codon, or abrogation of the rev initiation codon restored pseudovirion infectivity. Introduction of the fusion gene into wildtype Env cassettes severely compromised their function. The defect was not due to altered env and rev transcription or a dominant negative effect of the expressed fusion protein, but seemed to be caused by inefficient translation at the env initiation codon. Although the rev1-vpu polymorphism affects Env expression only in vitro, it can cause problems in studies requiring Env complementation, such as analyses of co-receptor usage and neutralization properties, since 3% of subtype A, 20% of subtype C and 5% of CRF01_A/E viruses encode the fusion gene. A solution is to eliminate the rev initiation codon when amplifying rev-vpu-env cassettes since this increases Env expression irrespective of the presence of the polymorphism.
Implementation of Bose - Einstein interference effects in Monte Carlo generators
Creators: name: Fiałkowski, K.
name: Wit, R.
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: A practical method of calculating weights implementing the Bose - Einstein interference effects is presented. The usefulness of the method is demonstrated for the events generated by the JETSET/PYTHIA code to describe the UA1 proton-antiproton data at 630GeV. A good description of data is achieved with a reasonable value of the Gaussian width of a two-particle weight factor, which is the only free parameter in our calculations.
description: 8 pages + 4 Postscript figures
Quasi-harmonic vs. ``exact'' surface free energies of Al: a systematic study employing a new interatomic potential
Creators: name: Hansen, U.
name: Vogl, P.
name: Fiorentini, V.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We discuss a computationally efficient classical many-body potential designed to model the Al-Al interaction in a wide range of bonding geometries. We show that the potential yields results in properties in excellent agreement with experiment and ab initio results for a number of bulk and surface properties, among others for surface and step formation energies, and self-diffusion barriers. As an application, free energy calculations are performed for the Al (100) surface by Monte Carlo thermodynamic integration and the quasi-harmonic approximation. Comparison of the latter approximation with the reference Monte Carlo results provides informations on its range of applicability to surface problems at high temperatures.
description: 11 pages, 5 ps figures, uses revtex/epsf. to appear on PRB
MOESM1 of Disruption of poly (3-hydroxyalkanoate) depolymerase gene and overexpression of three poly (3-hydroxybutyrate) biosynthetic genes improve poly (3-hydroxybutyrate) production from nitrogen rich medium by Rhodobacter sphaeroides
Creators: name: Jyumpei Kobayashi
name: Kondo, Akihiko
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Plant Biology

description: Additional file 1: Table S1. Volumetric PHB production, DCW, and PHB content of recombinant R. sphaeroides HJ strains. Table S2. Volumetric PHB production, DCW, and PHB content of recombinant R. sphaeroides HJ strains in various concentration of AS. Table S3 PHB synthetic genes in R. sphaeroides 2.4.1 and its corresponding genes in R. capsulatus SB 1003 strain. Table S4 Primers used in this study.
Epstein–Barr virus BRLF1 inhibits transcription of IRF3 and IRF7 and suppresses induction of interferon-β
Creators: name: Liu, Renshui
name: Pagano, Joseph S.
name: Bentz, Gretchen L.
name: Shackelford, Julia
name: Hahn, Angela M.
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2010

description: Activation of interferon regulatory factors (IRFs) 3 and 7 is essential for the induction of Type I interferons (IFN) and innate antiviral responses, and herpesviruses have evolved mechanisms to evade such responses. We previously reported that Epstein-Barr Virus BZLF1, an immediate-early (IE) protein, inhibits the function of IRF7, but the role of BRLF1, the other IE transactivator, in IRF regulation has not been examined. We now show that BRLF1 expression decreased induction of IFN-β, and reduced expression of IRF3 and IRF7; effects were dependent on N- and C-terminal regions of BRLF1 and its nuclear localization signal. Endogenous IRF3 and IRF7 RNA and protein levels were also decreased during cytolytic EBV infection. Finally, production of IFN-β was decreased during lytic EBV infection and was associated with increased susceptibility to superinfection with Sendai virus. These data suggest a new role for BRLF1 in the ability of to evade host innate immune responses.
Supplementary materials
Creators: name: Girma, Muluken
name: Heirbaut, Stijn
name: Hertogs, Karolien
name: Jing, Xiaoping
name: Zhang, Mingqi
name: Lutakome, Pius
name: Els, Stevens
name: Geerinckx, Katleen
name: Aernouts, Ben
name: Vandaele, Leen
name: Fievez, Veerle
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 300399
subject: Animal production not elsewhere classified

description: This is a supplementary material for an article submitted for journal of dairy science titled: Metabolic Clusters of Early-Lactating Dairy Cows Based on Blood β-hydroxybutyrate Trajectories and Predicted from Milk Compounds.
Defining risk thresholds: Appropriate body mass index cut-off for hypertension in Thai Cohort Study
Creators: name: Nipa Sakolchai
Publisher: name: Nakhon Pathom Rajabhat University
Year: 2019
Subjects: hypertension, body mass index, cut-o point for hypertension, Thailand

description: Interdisciplinary Research Review, 14, 4, 25
Scattering phases in quantum dots: an analysis based on lattice models
Creators: name: Yeyati, A. Levy
name: Buttiker, M.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The properties of scattering phases in quantum dots are analyzed with the help of lattice models. We first derive the expressions relating the different scattering phases and the dot Green functions. We analyze in detail the Friedel sum rule and discuss the deviation of the phase of the transmission amplitude from the Friedel phase at the zeroes of the transmission. The occurrence of such zeroes is related to the parity of the isolated dot levels. A statistical analysis of the isolated dot wave-functions reveals the absence of significant correlations in the parity for large disorder and the appearance, for weak disorder, of certain dot states which are strongly coupled to the leads. It is shown that large differences in the coupling to the leads give rise to an anomalous charging of the dot levels. A mechanism for the phase lapse observed experimentally based on this property is discussed and illustrated with model calculations.
description: 18 pages, 9 figures. to appear in Physical Review B
Phenomenology of Forward Hadrons in DIS: Fracture Functions and its $Q^2$ Evolution
Creators: name: de Florian, Daniel
name: Sassot, Rodolfo
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We analyse recent data on the production of forward neutrons in deep inelastic scattering at HERA in the framework of a perturbative QCD description for semi-inclusive processes, which includes fracture functions. Using a model estimate for the non-perturbative piece of the fragmentation process, in fairly good agreement with the available data, we analyse the $Q^2$ dependence of the resulting fracture functions, which is driven by non-homogeneous evolution equations. We also propose a measurement of the pion production cross section in the target fragmentation region as a new test of perturbative QCD, which in this case predicts also a different $Q^2$ evolution with respect to the one given by the usual Altarelli-Parisi equations.
description: LaTeX, 8 eps files included
Human parainfluenza virus type 2 V protein inhibits interferon production and signaling and is required for replication in non-human primates
Creators: name: Collins, Peter L.
name: Nishio, Machiko
name: Pickles, Raymond J.
name: Schaap-Nutt, Anne
name: D'Angelo, Christopher
name: Schmidt, Alexander C.
name: Murphy, Brian R.
name: Scull, Margaret A.
name: Amaro-Carambot, Emerito
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2010

description: In wild-type human parainfluenza virus type 2 (WT HPIV2), one gene (the P/V gene) encodes both the polymerase-associated phosphoprotein (P) and the accessory V protein. We generated a HPIV2 virus (rHPIV2-Vko) in which the P/V gene encodes only the P protein to examine the role of V in replication in vivo and as a potential live attenuated virus vaccine. Preventing expression of V protein severely impaired virus recovery from cDNA and growth in vitro, particularly in IFN-competent cells. rHPIV2-Vko, unlike WT HPIV2, strongly induced IFN-β and permitted IFN signaling, leading to establishment of a robust antiviral state. rHPIV2-Vko infection induced extensive syncytia and cytopathicity that was due to both apoptosis and necrosis. Replication of rHPIV2-Vko was highly restricted in the respiratory tract of African green monkeys and in differentiated primary human airway epithelial (HAE) cultures, suggesting that V protein is essential for efficient replication of HPIV2 in organized epithelial cells and that rHPIV2-Vko is over-attenuated for use as a live attenuated vaccine.
Numerical signs for a transition in the 2d Random Field Ising Model at T=0
Creators: name: Frontera, Carlos
name: Vives, Eduard
Publisher: name: arXiv
Year: 1999
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: Intensive numerical studies of exact ground states of the 2-d ferromagnetic random field Ising model at T=0 with gaussian distribution of fields are presented. Standard finite size scaling analysis of the data suggests the existence of a transition at sigma_c= 0.64 +/- 0.08. Results are compared with existing theories and with the study of metastable avalanches in the same model.
description: 14 pages, 5 eps figures
The quantum Heisenberg antiferromagnet on the square lattice
Creators: name: Cuccoli, A.
name: Tognetti, V.
name: Verrucchi, P.
name: Vaia, R.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: The pure-quantum self-consistent harmonic approximation, a semiclassical method based on the path-integral formulation of quantum statistical mechanics, is applied to the study of the thermodynamic behaviour of the quantum Heisenberg antiferromagnet on the square lattice (QHAF). Results for various properties are obtained for different values of the spin and successfully compared with experimental data.
description: Proceedings of the Conference "Path Integrals from peV to TeV - 50 Years from Feynman's paper" (Florence, August 1998) -- 2 pages, ReVTeX, 2 figures
Modulation of type I IFN induction by a virulence determinant within the alphavirus nsP1 protein
Creators: name: Suthar, Mehul S.
name: Cruz, Catherine C.
name: Heise, Mark T.
name: Johnston, Robert E.
name: Montgomery, Stephanie A.
name: Morrison, Thomas E.
name: Simmons, Jason
name: Shabman, Reed
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2010

description: Alphaviruses are mosquito-borne viruses that cause serious human and animal diseases. Previous studies demonstrated that a determinant within the nsP1/nsP2 cleavage domain of the virulent Sindbis AR86 virus played a key role in regulating adult mouse virulence without adversely affecting viral replication. Additional characterization of this determinant demonstrated that a virus with the attenuating mutation induced more type I IFN production both in vivo and in vitro. Interestingly, this phenotype was not specific to the Sindbis AR86 virus, as a similar mutation in a distantly related alphavirus, Ross River Virus (RRV), also led to enhanced IFN induction. This effect was independent of virus-induced host shutoff, since IRF-3 phosphorylation, which occurs independently of de novo host transcription/translation, was induced more robustly in cells infected with the mutant viruses. Altogether, these results demonstrate that critical determinants within the nsP1/nsP2 cleavage domain play an important role in regulating alphavirus induced IFN responses.
A holographic description of heavy-flavoured baryonic matter decay involving glueball
Creators: name: Li, Si-wen
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We holographically investigate the decay of heavy-flavoured baryonic hadron involving glueball by using the Witten-Sakai-Sugimoto model. Since baryon in this model is recognized as the D4-brane wrapped on $S^{4}$ and the glueball field is identified as the bulk gravitational fluctuations, the interaction of the bulk graviton and the baryon brane could be naturally interpreted as glueball-baryon interaction through the holography which is nothing but the close-open string interaction in string theory. In order to take account into the heavy flavour, an extra pair of heavy-flavoured branes separated from the other flavour branes with a heavy-light open string is embedded into the bulk. Due to the finite separation of the flavour branes, the heavy-light string creates massive multiplets which could be identified as the heavy-light meson fields in this model. As the baryon brane on the other hand could be equivalently described by the instanton configuration on the flavour brane, we solve the equations of motion for the heavy-light fields with the Belavin-Polyakov-Schwarz-Tyupkin (BPST) instanton solution for the $N_{f}=2$ flavoured gauge fields. Then with the solutions, we evaluate the soliton mass by deriving the flavoured onshell action in strongly coupling limit and heavy quark limit. After the collectivization and quantization, the quantum mechanical system for glueball and heavy-flavoured baryon is obtained in which the effective Hamiltonian is time-dependent. Finally we use the standard technique for the time-dependent quantum mechanical system to analyze the decay of heavy-flavoured baryon involving glueball and we find one of the decay process might correspond to the decay of baryonic B-meson involving the glueball candidate $f_{0}\left(1710\right)$. This work is a holographic approach to study the decay of heavy-flavoured hadron in nuclear physics.
description: 24 pages, 3 tables, 1 figure, add more analysis and fix the references in this version
AAV-6 mediated efficient transduction of mouse lower airways
Creators: name: Zhang, Liqun
name: Wu, Zhijian
name: Pickles, Raymond J.
name: Li, Wuping
name: Samulski, R. Jude
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2011

description: AAV1 and AAV6 are two closely related AAV serotypes. In the present study, we found AAV6 was more efficient in transducing mouse lower airway epithelia in vitro and in vivo than AAV1. To further explore the mechanism of this difference, we found that significantly more AAV1 bound to mouse airway epithelia than AAV6, yet transduction by AAV6 was far superior. Lectin competition assays demonstrated that both AAV1 and AAV6 similarly utilize α-2, 3-, and to a lesser extend α-2, 6- linked sialic acids as the receptors for transduction. Furthermore, the rates of AAV endocytosis could not account for the transduction differences of AAV1 and AAV6. Finally, it was revealed that AAV6 was less susceptible to ubiquitin/proteasome-mediated blocks than AAV1 when transducing mouse airway epithelia. Thus compared with AAV1, AAV6 has a unique ability to escape proteasome-mediated degradation, which is likely responsible for its higher transduction efficiency in mouse airway epithelium.
Evolution of cosmological perturbations in a stage dominated by an oscillatory scalar field
Creators: name: Kodama, Hideo
name: Hamazaki, Takashi
Publisher: name: arXiv
Year: 1996
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: In the investigation of the evolution of cosmological perturbations in inflationary universe models the behavior of perturbations during the reheating stage is the most unclear point. In particular in the early reheating phase in which a rapidly oscillating scalar field dominates the energy density, the behavior of perturbations are not known well because their evolution equation expressed in terms of the curvature perturbation becomes singular. In this paper it is shown that in spite of this singular behavior of the evolution equation the Bardeen parameter stays constant in a good accuracy during this stage for superhorizon-scale perturbations except for a sequence of negligibly short intervals around the zero points of the time derivative of the scalar field. This justifies the conventional formula relating the amplitudes of quantum fluctuations during inflation and those of adiabatic perturbations at horizon crossing in the Friedmann stage, except for possible corrections produced by the energy transfer from the scalar field to radiation in the late stage of reheating. It is further shown that outside the above sequence of time intervals the behavior of the perturbations coincides in a good accuracy with that for a perfect fluid system obtained from the original scalar field system by the WKB approximation and a spacetime averaging over a Hubble horizon scale.
description: Revised version, 23 pages, no figure, plain LaTeX, minor errors in some equations are corrected, no change in the main results and the conclusion
Additional file 1: of Mixed-methods approach to evaluate an mHealth intervention to increase adherence to triage of human papillomavirus-positive women who have performed self-collection (the ATICA study): study protocol for a hybrid type I cluster randomized effectiveness-implementation trial
Creators: name: Arrossi, Silvina
name: Paolino, Melisa
name: Orellana, Liliana
name: Thouyaret, Laura
name: Kohler, Racquel
name: Kasisomayajula Viswanath
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy

description: Standard Protocol Items: Recommendations for Interventional Trials (SPIRIT) Checklist: ATICA Study protocol. (DOC 120 kb)
Impact of non-coding RNAs in genetic disease and papillomavirus lifecycle
Creators: name: Chirayil, Rachel
Publisher: name: The University of Texas at Austin
Year: 2017
Subjects: Alpha-1-antitrypson deficiency
Papillomaviruses

description: Non-coding RNAs are vital to several diverse biological processes. Untranslated regions of mRNAs (UTRs) and variability therein can often cause differential regulation of transcripts. This regulation is often effected by microRNAs (miRNAs), small non-coding RNAs that interacts with 3’UTRs to regulate gene expression post-transcriptionally. Here we investigate the variation in the 3’UTR of SERPINA1 gene, mutations of which cause the often life-threatening Alpha-1-antitrypsin deficiency (A1AD), and effects on miRNA. We screened 50 miRNA mimics and determined their overexpression does not affect secreted alpha-1-antitrypsin (AAT). Additionally, we showed through the use of a poxvirus protein to degrade miRNAs that underexpression of miRNAs does not affect secreted AAT. Using luciferase reporters we determine that in cultured cells, there are no liver-specific trans-factors that act on the SERPINA1 3’UTR, of any length, to regulate gene expression. We sequenced the 3’UTRs from the largest cohort of of A1AD patients to date and determined that 3’UTR variation does not contribute to disease severity in patients with one form of A1AD, and that in a cell culture context, miRNAs do not regulate secreted AAT. We conclude that neither 3’UTR variation nor miRNAs affect wild-type secreted AAT. In addition to genetic disease, miRNAs regulate multiple aspects of the host-pathogen interface. Until now no widely accepted PV-encoded miRNAs have been described. We have developed miRNA Discovery by forced Genomic Expression (miDGE), a new wet bench approach to miRNA identification that screens numerous pathogen genomes in parallel. Using miDGE, we screened over 75 different PV genomes for the ability to code for miRNAs. We conclusively demonstrate a lack of PV miRNA expression in cancers associated with infections of several high risk HPVs. However, we identified five different miRNAs encoded by four different PVs (Human PVs 17, 37, 41 and Fringilla colebs (Fc) PV). We show that miRNAs from two PVs (HPV41 & FcPV) are able to regulate transcripts corresponding to the early region of the PV genome.. Combined, these findings identify the first canonical PV miRNAs and support that miRNAs of either host or viral origin are important regulators of the PV life cycle.
Microvelia (Microvelia) priesneri Hoberlandt 1951
Creators: name: Kment, Petr
name: Kolínová, Zdislava
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Veliidae
Microvelia
Microvelia priesneri

description: Microvelia (Microvelia) priesneri Hoberlandt, 1951
 Microvelia (Microvelia) priesneri Hoberlandt, 1951b: 271–275, Figs 1 –9 (original description, key).
The holotype and one paratype are deposited in NMPC:
HOLOTYPE (J apter.): ‘Alex. [hw] / Egypt. [p] 12.9.33 [hw] / Dr. H. Priesner [p, white label with black frame submarginally] // Holotypus [p, red label] // Holotypus [p] / Microvelia (s. str.) / priesneri sp. n. / f. apt. J [hw] / Det. L. Hoberlandt, 19[p]51 [hw, red label] // Mus. Nat. Pragae / Inv. [p] 1213 [hw, orange label]’. (The specimen is card-mounted; antenna and all legs on the left side, and genitalia dissected, stored in a set of three microslides attached to three pieces of card placed on the same pin).
PARATYPE (♀ apter.): ‘Alex. [hw] / Egypt. [p] 12.9.33 [hw] / Dr. H. Priesner [p, white label with black frame submarginally] // Paratypus [p, red label] // Paratypus [p] / Microvelia (s. str.) / priesneri sp. n. / f. apt. ♀ [hw] / Det. L. Hoberlandt, 19[p]51 [hw, red label] // Mus. Nat. Pragae / Inv. [p] 1214 [hw, orange label]’.
 Current status. Junior synonym of Microvelia (Picaultia) popovi Brown, 1951 (see LIN- NAVUORI 1986, ANDERSEN 1995, ANDERSEN & WEIR 2003, AUKEMA et al. 2013).
description: Published as part of Kment, Petr & Kolínová, Zdislava, 2013, Catalogue of type specimens of true bugs (Hemiptera: Heteroptera) deposited in the National Museum, Prague, Czech Republic, pp. 821-890 in Acta Entomologica Musei Nationalis Pragae 53 (2) on page 846, DOI: 10.5281/zenodo.5740731
Magnetization profiles and NMR spectra of doped Haldane chains at finite temperatures
Creators: name: Alet, F.
name: Sorensen, E.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Open segments of S=1 antiferromagnetic spin chains are studied at finite temperatures and fields using continuous time Quantum Monte Carlo techniques. By calculating the resulting magnetization profiles for a large range of chain lengths with fixed field and temperature we reconstruct the experimentally measured NMR spectrum of impurity doped Y$_2$BaNi$_{1-x}$Mg$_x$O$_5$. For temperatures above the gap the calculated NMR spectra are in excellent agreement with the experimental results, confirming the existence of $S=1/2$ excitations at the end of open S=1 chain segments. At temperatures below the gap, neglecting inter chain couplings, we still find well defined peaks in the calculated NMR spectra corresponding to the $S=1/2$ chain end excitations. At low temperatures, inter chain couplings could be important, resulting in a more complicated phase.
description: 7 pages, 5 figures, minor corrections
On the origin of ultrametricity
Creators: name: Parisi, Giorgio
name: Ricci-Tersenghi, Federico
Publisher: name: arXiv
Year: 1999
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: In this paper we show that in systems where the probability distribution of the the overlap is non trivial in the infinity volume limit, the property of ultrametricity can be proved in general starting from two very simple and natural assumptions: each replica is equivalent to the others (replica equivalence or stochastic stability) and all the mutual information about a pair of equilibrium configurations is encoded in their mutual distance or overlap (separability or overlap equivalence).
description: 13 pages, 1 figure
Additional file 2 of Using health economic modelling to inform the design and development of an intervention: estimating the justifiable cost of weight loss maintenance in the UK
Creators: name: Bates, Sarah E.
name: Thomas, Chloe
name: Islam, Nazrul
name: Ahern, Amy L.
name: Breeze, Penny
name: Griffin, Simon
name: Brennan, Alan
Publisher: name: figshare
Year: 2022
Subjects: Medicine
Neuroscience
Biological Sciences not elsewhere classified
Science Policy
Computational Biology

description: Additional file 2. In-depth description of the SPHR health economic model.
Comparison of differing cytopathic effects in human airway epithelium of parainfluenza virus 5 (W3A), parainfluenza virus type 3, and respiratory syncytial virus
Creators: name: Lamb, Robert A.
name: Zhang, Liqun
name: Collins, Peter L.
name: Pickles, Raymond J.
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2011

description: Parainfluenza virus 5 (PIV5) infects a wide range of animals including dogs, pigs, cats, and humans; however, its association with disease in humans remains controversial. In contrast to parainfluenza virus 3 (PIV3) or respiratory syncytial virus (RSV), PIV5 is remarkably non-cytopathic in monolayer cultures of immortalized epithelial cells. To compare the cytopathology produced by these viruses in a relevant human tissue, we infected an in vitro model of human ciliated airway epithelium and measured outcomes of cytopathology. PIV5, PIV3 and, RSV all infected ciliated cells, and PIV5 and PIV3 infection was dependent on sialic acid residues. Only PIV5-infected cells formed syncytia. PIV5 infection resulted in a more rapid loss of infected cells by shedding of infected cells into the lumen. These studies revealed striking differences in cytopathology of PIV5 versus PIV3 or RSV and indicate the extent of cytopathology determined in cell-lines does not predict events in differentiated airway cells.
Optimization of $Al/AlO_x/Al$-Layer Systems for Josephson Junctions from a Microstructure Point of View
Creators: name: Fritz, S.
name: Radtke, L.
name: Schneider, R.
name: Weides, M.
name: Gerthsen, D.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: $Al/AlO_x/Al$-layer systems are frequently used for Josephson junction-based superconducting devices. Although much work has been devoted to the optimization of the superconducting properties of these devices, systematic studies on influence of deposition conditions combined with structural analyses on the nanoscale are rare up to now. We have focused on the optimization of the structural properties of $Al/AlO_x/Al$-layer systems deposited on Si(111) substrates with a particular focus on the thickness homogeneity of the $AlO_x$-tunnel barrier. A standard high-vacuum electron-beam deposition system was used and the effect of substrate pretreatment, different Al-deposition temperatures and Al-deposition rates was studied. Transmission electron microscopy was applied to analyze the structural properties of the $Al/AlO_x/Al$-layer systems to determine the thickness homogeneity of the $AlO_x$ layer, grain size distribution in the Al layers, Al-grain boundary types and the morphology of the $Al/AlO_x$ interface. We show that the structural properties of the lower Al layer are decisive for the structural quality of the whole $Al/AlO_x/Al$-layer system. Optimum conditions yield an epitaxial Al(111) layer on a Si(111) substrate with an Al-layer thickness variation of only 1.6 nm over more than 10 $μm$ and large lateral grain sizes up to 1 $μm$. Thickness fluctuations of the $AlO_x$-tunnel barrier are minimized on such an Al layer which is essential for the homogeneity of the tunnel current. Systematic variation of the Al-deposition rate and deposition temperature allows to develop an understanding of the growth mechanisms.
Path-tracing Monte Carlo Library for 3D Radiative Transfer in Highly Resolved Cloudy Atmospheres
Creators: name: Villefranque, Najda
name: Couvreux, Fleur
name: Fournier, Richard
name: Blanco, Stéphane
name: Cornet, Céline
name: Eymet, Vincent
name: Forest, Vincent
name: Tregan, Jean-Marc
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: Interactions between clouds and radiation are at the root of many difficulties in numerically predicting future weather and climate and in retrieving the state of the atmosphere from remote sensing observations. The large range of issues related to these interactions, and in particular to three-dimensional interactions, motivated the development of accurate radiative tools able to compute all types of radiative metrics, from monochromatic, local and directional observables, to integrated energetic quantities. In the continuity of this community effort, we propose here an open-source library for general use in Monte Carlo algorithms. This library is devoted to the acceleration of path-tracing in complex data, typically high-resolution large-domain grounds and clouds. The main algorithmic advances embedded in the library are those related to the construction and traversal of hierarchical grids accelerating the tracing of paths through heterogeneous fields in null-collision (maximum cross-section) algorithms. We show that with these hierarchical grids, the computing time is only weakly sensitivive to the refinement of the volumetric data. The library is tested with a rendering algorithm that produces synthetic images of cloud radiances. Two other examples are given as illustrations, that are respectively used to analyse the transmission of solar radiation under a cloud together with its sensitivity to an optical parameter, and to assess a parametrization of 3D radiative effects of clouds.
description: Submitted to JAMES, revised and submitted again (this is v2)
A coach's perspective on augmented feedback (and technology) in cricket
Creators: name: Tissera, K
name: Orth, D
name: Huynh, Minh
name: Benson, AC
Publisher: name: La Trobe
Year: 2024
Subjects: classificationCode: 4207
subject: Sports science and exercise
classificationCode: 3901
subject: Curriculum and pedagogy

description: Coaches utilise augmented feedback to help channel learning and skill acquisition in sports. However, the rationale and pedagogical approaches underpinning feedback (and technology) strategies employed by coaches remain poorly understood. The purpose of this study was to explore cricket coaches understanding towards the role of feedback, and how feedback (and technology) strategies are enacted within practice settings, viewed within pedagogical frameworks. An online questionnaire (Qualtrics) consisted of fixed-text and free-text questions. Fixed-text responses were analysed exploring associations (frequencies, chi-square) or differences (Mann-Whitney U) between coaching groups, with free-text questions examined through reflexive thematic analysis, exploring approaches to presenting athletes with feedback (and technology use). Overall, 134 coaches (94% male, 6% female) aged 18–69 years from 12 countries responded to the questionnaire. Following silhouette and k-modes cluster analysis, results were explored for two coaching groups: community cricket coaches (n = 84, 63%) and higher-performance coaches (n = 50, 37%). Significant differences showed greater coaching experience, qualifications, and time spent coaching per week for the higher-performance coaching group (p < 0.0125), in addition to higher self-efficacy around feedback, albeit with a small effect size (p < 0.001, r = 0.29). Community coaches showed a significant difference in manipulating feedback strategies on motivational factors (p < 0.0125). Reflexive thematic analysis identified different rationales for the perceived role of feedback and use of technology across coaching groups, underpinned by contrasting pedagogical approaches (coach-centred versus athlete-centred). Responses highlighted the co-adaptive properties of coach-athlete dyads (evident in how/why feedback was manipulated). Overall findings present opportunities to further coach education to improve understanding and operationalisation of feedback (and technology).
Microvelia (Trichovelia) troilos Linnavuori 1975
Creators: name: Kment, Petr
name: Kolínová, Zdislava
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Veliidae
Microvelia
Microvelia troilos

description: Microvelia (Trichovelia) troilos Linnavuori, 1975
 Microvelia (Trichovelia) troilos Linnavuori, 1975: 50–53, Figs 19–25 (original description, key).
PARATYPE (♀ apter.): ‘ Côte d’Ivoire / Bouaké / IV-1964 / leg.R.H.Cobben [p] // Paratype / micr. (Trichovelia / troilos
Linn. ♀ [sic!; hw, pale green label]’.
 Current status. Valid species: Pseudovelia (Trichovelia) troilos (Linnavuori, 1975) (see LINNAVUORI 1977, ANDERSEN 1983).
description: Published as part of Kment, Petr & Kolínová, Zdislava, 2013, Catalogue of type specimens of true bugs (Hemiptera: Heteroptera) deposited in the National Museum, Prague, Czech Republic, pp. 821-890 in Acta Entomologica Musei Nationalis Pragae 53 (2) on page 846, DOI: 10.5281/zenodo.5740731
Foxp3 inhibits HDAC1 activity to modulate gene expression in human T cells
Creators: name: Su, Lishan
name: Gao, Jianmei
name: Holmes, Derek
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2011

description: We have previously reported that HIV-1 preferentially infects Foxp3+ Treg cells in vitro and in vivo, and Foxp3 enhances the HIV-1 LTR expression through epigenetic mechanisms in T cells. We report here that histone deacetylase inhibitor (HDACi) failed to further enhance HIV gene expression in FoxP3+ T cells. We discovered that Foxp3 inhibited cellular HDAC activity in T cells, and mutations in the forkhead domain that ablate Foxp3 function also abolished its ability to inhibit HDAC. When co-expressed, Foxp3 specifically inhibited the deacetylase activity of HDAC1. We further showed that Foxp3 was associated with HDAC1, and mutations in the forkhead domain that ablate Foxp3 function in Treg cells also inhibited Foxp3 association with and inhibition of HDAC1. Finally, Foxp3 failed to enhance HIV-1 gene expression in human T cells expressing HDAC1-specific shRNA. We conclude that Foxp3 modulates gene expression in human T cells at least partly by inhibiting HDAC1 activity.
Pauli-Limited Superconductivity in Small Grains
Creators: name: Bonsager, M. C.
name: MacDonald, A. H.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We report on an exploration of the mean-field phase diagram for Pauli-limited superconductivity in small metallic grains. Emphasis is placed on the crossover from the ultra-small grain limit where superconductivity disappears to the bulk thin-film limit as the single-particle level spacing in the grain decreases. We find that the maximum Zeeman coupling strength compatible with superconductivity increases with decreasing grain size, in spite of a monotonically decreasing condensation energy per unit volume.
description: 4 pages of text, 6 figures
Additional file 1: of Sociodemographic factors and choice of oral anticoagulant in patients with non-valvular atrial fibrillation in Sweden: a population-based cross-sectional study using data from national registers
Creators: name: Gurusamy, Venkatesh
name: Brobert, Gunnar
name: Pareen Vora
name: Friberg, Leif
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Hematology
subject: Computational Biology

description: Table S1. ICD-10 codes used to define comorbidities. Table S2. ORs (95% confidence intervals) for the associations between comorbidities/comedication and first anticoagulant prescription among patients with NVAF. (DOCX 52 kb)
Pseudovelia polhemi Hecher 2006
Creators: name: Kment, Petr
name: Kolínová, Zdislava
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Veliidae
Pseudovelia
Pseudovelia polhemi

description: Pseudovelia polhemi Hecher, 2006
 Pseudovelia polhemi Hecher, 2006: 436, 438–440, 450–451, 453–454, Figs 11, 16–18, 43, 57–58 (original description, key).
Two paratypes are deposited in NMPC (exchange with Natural History Museum, Vienna):
PARATYPE (J apter.): ‘ Philippinen: La Union / Bacnotan, Don Mariano / Marcos Mem. State Univ. / Casiaman Falls, 24.10. / 2002, leg.H.Zettel (312) [p] // J [p] // Paratypus / Pseudovelia / polhemi sp. n. / des. Hecher 2006 [p, red label]’.
PARATYPE (♀ apter.): ‘ Philippinen: La Union / Bacnotan, Don Mariano / Marcos Mem. State Univ. / Casiaman Falls, 24.10. / 2002, leg.H.Zettel (312) [p] // ♀ [p] // Paratypus / Pseudovelia / polhemi sp. n. / des. Hecher 2006 [p, red label]’.
 Current status. Valid species: Pseudovelia (Pseudovelia) polhemi Hecher, 2006.
description: Published as part of Kment, Petr & Kolínová, Zdislava, 2013, Catalogue of type specimens of true bugs (Hemiptera: Heteroptera) deposited in the National Museum, Prague, Czech Republic, pp. 821-890 in Acta Entomologica Musei Nationalis Pragae 53 (2) on page 847, DOI: 10.5281/zenodo.5740731
Pseudovelia tibialis Esaki & Miyamoto 1955
Creators: name: Kment, Petr
name: Kolínová, Zdislava
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Veliidae
Pseudovelia
Pseudovelia tibialis

description: Pseudovelia tibialis Esaki & Miyamoto, 1955
 Pseudovelia tibialis Esaki & Miyamoto, 1955: 174–176, 179, 193–199, Figs 3A–D, 4D, 8A–E, 9A–J, Pl. 25: Fig. B, Pl. 29: Figs A–C (original description, key).
Four paratypes are deposited in NMPC:
 PARATYPE (J apter.): ‘(Kyushu) / Mt. Kirishima / Hyuga / 28. IX. 1952 / R. Morimoto [hw] // J [p] // PARATYPUS / PSEUDOVELIA / TIBIALIS / Esaki & Miyamoto, 1955 / labelled: P. KMENT 2013 [p, red label]’.
 PARATYPE (♀ apter.): ‘(Kyushu) / Mt. Kirishima / Hyuga / 28. IX. 1952 / R. Morimoto [hw] // ♀ [p] // PARATYPUS / Pseudovelia / tibialis / Esaki et Miyamoto / reverse: (Kyushu) / Mt. Kirishima / Hyuga / 28. IX. 1952 / R. Morimoto [hw] // PARATYPUS / PSEUDOVELIA / TIBIALIS / Esaki & Miyamoto, 1955 / labelled: P. KMENT 2013 [p, red label]’.
 PARATYPE (J macr.): ‘(Kyushu) / Mt. Kirishima / Hyuga / 28. IX. 1952 / R. Morimoto [hw] // J [p] // PARATYPUS / Pseudovelia / tibialis / Esaki et Miyamoto / reverse: (Kyushu) / Mt. Kirishima / Hyuga / 28. IX. 1952 / R. Morimoto [hw] // PARATYPUS / PSEUDOVELIA / TIBIALIS / Esaki & Miyamoto, 1955 / labelled: P. KMENT 2013 [p, red label]’.
 PARATYPE (J macr.): ‘(Kyushu) / Mt. Kirishima / Hyuga / 28. IX. 1952 / R. Morimoto [hw] // ♀ [p] // PARATYPUS / PSEUDOVELIA / TIBIALIS / Esaki & Miyamoto, 1955 / labelled: P. KMENT 2013 [p, red label]’. (Detached antennal segment III and IV of both antennae glued on a separate piece of card).
 Current status. Valid species: Pseudovelia tibialis tibialis Esaki & Miyamoto, 1955 (see MIYAMOTO & LEE 1963; ANDERSEN 1983, 1995a; YE et al. 2013a).
description: Published as part of Kment, Petr & Kolínová, Zdislava, 2013, Catalogue of type specimens of true bugs (Hemiptera: Heteroptera) deposited in the National Museum, Prague, Czech Republic, pp. 821-890 in Acta Entomologica Musei Nationalis Pragae 53 (2) on page 848, DOI: 10.5281/zenodo.5740731