cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Atmospheric neutrino results from Super-Kamiokande and Kamiokande - Evidence for nu_mu oscillations -
Creators: name: Kajita, Takaaki
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: New atmospheric neutrino results from Super-Kamiokande are presented. Results from Kamiokande on upward going muons are also presented. All these data, together with the Kamiokande atmospheric neutrino data give evidence for neutrino oscillations. Two flavor nu_mu nu_tau oscillations, with large sin^2(2theta) and Delta-m^2 in the region of 10^-3 to 10^-2, explain all these data.
description: 10 pages, 6 figures, to appear in the proceedings of XVIII International Conference on Neutrino Physics and Astrophysics (Neutrino'98), Takayama, Japan, June 1998
High heterogeneity of plasmid-mediated quinolone resistance in Escherichia coli isolates recovered from livestock and food in Germany
Creators: name: Juraschek, Katharina
name: Grobbel, Mirjam
name: Käsbohrer, Annemarie
name: Tenhagen, Bernd-Alois
name: Hammerl, Jens Andre
Publisher: name: Zenodo
Year: 2020

description: Introduction: Resistance to quinolones can be chromosomally encoded or plasmid-mediated (PMQR). One PMQR mechanism is mediated by Qnr proteins. The horizontal gene transfer of this plasmid-mediated quinolone resistance increases the threat of fallible treatment with quinolones. Objectives: To better understand the distribution of PMQR, in particular qnr genes, Escherichia (E.) coli isolates recovered in 2017 from livestock and food were phenotypically and genotypically characterized. Materials & Methods: 3,409 E. coli isolates from the German National Reference Laboratory for Antimicrobial Resistance were investigated. The isolates were received in the German national monitoring program for antimicrobial resistance. Antimicrobial resistance was determined by broth microdilution according to CLSI guidelines. MIC values for ciprofloxacin and nalidixic acid were evaluated using EUCAST epidemiological cut-off values (MICNAL ≥16 mg/L, MICCIP ≥0.06 mg/L). E. coli resistant to quinolones were subjected to qnr-PCR, XbaI-PFGE, S1-PFGE, WGS and bioinformatic analysis. Six different qnr-PCRs were conducted to identify the respective qnr-variants. Results: Overall, 504 isolates were classified as quinolone-resistant. Of those, 107 were found to harbor a qnr gene. The most abundant qnr-variant was qnrS. PFGE profiling for the 107 qnr positive isolates demonstrated a high heterogeneity, indicating that they are not associated to a predominant E. coli clone spreading via vertical transmission. S1-PFGE plasmid profiling showed a variety of extrachromosomal elements of various sizes. 43 Isolates, selected according their XbaI- and S1-PFGE pattern were further screened for their genetic setting through short read whole genome sequencing (WGS). Sequencing confirmed the high genetic diversity of the quinolone-resistant E. coli strains. Conclusion: Quinolone-resistance could not be attributed to a specific lineage of E. coli. Further analysis is needed for a better understanding of the plasmid diversity within qnr-harboring E. coli and the prerequisites of their spread.
Critical Dynamics of Gelation
Creators: name: Broderix, Kurt
name: Loewe, Henning
name: Mueller, Peter
name: Zippelius, Annette
Publisher: name: arXiv
Year: 2000
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Soft Condensed Matter (cond-mat.soft)
subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: Shear relaxation and dynamic density fluctuations are studied within a Rouse model, generalized to include the effects of permanent random crosslinks. We derive an exact correspondence between the static shear viscosity and the resistance of a random resistor network. This relation allows us to compute the static shear viscosity exactly for uncorrelated crosslinks. For more general percolation models, which are amenable to a scaling description, it yields the scaling relation $ k=ϕ-β$ for the critical exponent of the shear viscosity. Here $β$ is the thermal exponent for the gel fraction and $ϕ$ is the crossover exponent of the resistor network. The results on the shear viscosity are also used in deriving upper and lower bounds on the incoherent scattering function in the long-time limit, thereby corroborating previous results.
description: 34 pages, 2 figures (revtex, amssymb); revised version (minor changes)
A self consistent field approach to surfaces of compressible polymer blends
Creators: name: Schmid, F.
Publisher: name: arXiv
Year: 1996
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: A self consistent field theory for compressible polymer mixtures is developed by introducing elements of classical density functional theory into the framework of the Helfand theory. It is then applied to study free surfaces of binary (A,B) polymer blends. Density profiles in the one- and two-phase region are calculated as well as chain end distributions and chain orientations of the minority and the majority component. In the ideally symmetric mixture, in which the individual properties of polymers A and B are the same and both have the same surface energy, polymers of the minority component segregate to the surface, where they are exposed to less polymers of the majority component. This effect can only be captured correctly, if one accounts for the fact that the monomer-monomer interaction has finite range. As a consequence, the Flory-Huggins-parameter varies in space and depends on the concentration profiles and their derivatives. The surface segregation calculated with such an ansatz, without any fit parameter, is in reasonable quantitative agreement with data from recent Monte Carlo simulations.
description: 45 pages, latex, 12 figures, accepted by the Journal of Chemical physics
The Gauge-Higgs Legacy of the LHC Run II
Creators: name: Biekötter, Anke
name: Corbett, Tyler
name: Plehn, Tilman
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We present a global analysis of the Higgs and electroweak sector based on LHC Run II and electroweak precision observables. We show which measurements provide the leading constraints on Higgs-related operators, and how the achieved LHC precision makes it necessary to combine rate measurements with electroweak precision observables. The SFitter framework allows us to include kinematic distributions beyond pre-defined ATLAS and CMS observables, independently study correlations, and avoid Gaussian assumptions for theory uncertainties. These Run II results are a step towards a precision physics program at the LHC, interpreted in terms of effective operators.
description: 16 pages, 8 figures, comments added
A theory of phonon spectroscopy in the fractional quantum Hall regime
Creators: name: Benedict, Keith A.
name: Hills, R. K.
name: Mellor, C. J.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We describe a theoretical framework for the interpretation of time-resolved phonon absorption experiments carried out in the fractional quantum Hall regime of a magnetically quantized two-dimensional electron system (2des). The only phonons which can be absorbed at low temperature are those whose energies exceed the magnetoroton gap predicted by Girvin, MacDonald and Platzman. The rate of energy transfer from the phonons to the electron liquid is entirely controlled by the creation of these collective excitations. Using simple isotropic approximations for the phonon propagation and electron-phonon coupling we obtain analytic results for the regime in which the electron temperature and the characteristic temperature of the phonons are much less than the gap and identify the way in which the dispersion curve of the magnetorotons could be extracted from time and angle resolved experiments.
description: To appear in Physical Review B, 4 figures
Additional file 3: of Gaucher disease: single gene molecular characterization of one-hundred Indian patients reveals novel variants and the most prevalent mutation
Creators: name: Jayesh Sheth
name: Riddhi Bhavsar
name: Mehul Mistri
name: Dhairya Pancholi
name: Bavdekar, Ashish
name: Ashwin Dalal
name: Prajnya Ranganath
name: Katta M Girisha
name: Shukla, Anju
name: Phadke, Shubha
name: Puri, Ratna
name: Inusha Panigrahi
name: Anupriya Kaur
name: Muranjan, Mamta
name: Goyal, Manisha
name: Ramadevi, Radha
name: Shah, Raju
name: Nampoothiri, Sheela
name: Danda, Sumita
name: Chaitanya Datar
name: Kapoor, Seema
name: Bhatwadekar, Seema
name: Frenny Sheth
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: In silico analysis of the functional effect of the variants identified in the patients with Gaucher disease. The in silico tools predicting the effect of DNA variants, amino acid substitution, non-coding variants, and coding non-synonymous variants were employed to predict the functional effect of the variants identified in the given study. (DOCX 20 kb)
Lack of high-mass prestellar cores in the starless MDCs of NGC6334
Creators: name: Louvet, F.
name: Neupane, S.
name: Garay, G.
name: Russeil, D.
name: Zavagno, A.
name: Guzman, A.
name: Gomez, L.
name: Bronfman, L.
name: Nony, T.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Two families of models compete to explain the formation of high-mass stars. The quasi-static models predict the existence of high-mass pre-stellar cores sustained by a high degree of turbulence while competitive accretion models predict that high-mass proto-stellar cores evolve from low/intermediate mass proto-stellar cores in dynamic environments. We present ALMA (1.4 mm continuum emission and $^{12}$CO emission line) and MOPRA (HCO$^{+}$, H$^{13}$CO$^{+}$ and N$_2$H$^+$ molecular line emissions) observations of a sample of 9 starless massive dense cores (MDCs) discovered in a recent Herschel/HOBYS study that have masses and sizes ($\sim$110 M$_\odot$ and $r\sim$0.1 pc, respectively) similar to the initial conditions used in the quasi-static models. The MOPRA molecular line features show that 3 of the starless MDCs are subvirialized with $α_{\rm vir}\sim$0.35, and 4 MDCs show sign of collapse. Our ALMA observations, on the other hand, show very little fragmentation within the MDCs whereas the observations resolve the Jeans length ($λ_{\rm Jeans}\sim$0.03 pc) and are sensitive to the Jeans mass (M$_{\rm Jeans}\sim$0.65 M$_\odot$) in the 9 starless MDCs. Only two of the starless MDCs host compact continuum sources, whose fluxes correspond to $<3$ M$_\odot$ fragments. Therefore the mass reservoir of the MDCs has not yet been accreted onto compact objects, and most of the emission is filtered out by the interferometer. These observations do not support the quasi-static models for high-mass star formation since no high-mass pre-stellar core is found in NGC6334. The competitive accretion models, on the other hand, predict a level of fragmentation much higher than what we observe.
description: Accepted by A&A
Bolometric detection of mechanical bending waves in suspended carbon nanotubes
Creators: name: Reulet, B.
name: Kasumov, A. Yu.
name: Kociak, M.
name: Deblock, R.
name: Khodos, I. I.
name: Gorbatov, Yu. B.
name: Volkov, V. T.
name: Journet, C.
name: Bouchiat, H.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We show that it is possible to detect mechanical bending modes on 1 micron long ropes of single walled-carbon nanotubes suspended between 2 metallic contacts. This is done by measuring either their dc resistance in a region of strong temperature dependence (in the vicinity of superconducting or metal-insulator transition), or their critical current. The vibrations are excited by a radio-frequency electric field produced by an antenna located in the vicinity of the sample. We analyze the mechanism of detection of the mechanical resonances in terms of heating and phase breaking effects.
description: 4 figures
Additional file 2: of Design and methods of the ‘monitoring outcomes of psychiatric pharmacotherapy’ (MOPHAR) monitoring program – a study protocol
Creators: name: Simoons, Mirjam
name: Ruhé, Henricus
name: Roon, Eric
name: Schoevers, Robert
name: Bruggeman, Richard
name: Cath, Daniëlle
name: Muis, Diny
name: Arends, Johan
name: Bennard Doornbos
name: Mulder, Hans
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Biotechnology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: Table S2. MOPHAR monitoring protocol tricyclic antidepressants (TCAs) (DOCX 19 kb)
HIGH DIVERSITY OF PLASMIDS CARRYING QNR RESISTANCE GENES IN FLUOROQUINOLONE RESISTANT ESCHERICHIA COLI ISOLATED IN GERMANY IN 2017
Creators: name: Juraschek, Katharina
name: Schmoger, Silvia
name: Grobbel, Mirjam
name: Malorny, Burkhard
name: Käsbohrer, Annemarie
name: Schwarz, Stefan
name: Meemken, Diana
name: Hammerl, Jens Andre
Publisher: name: Zenodo
Year: 2021

description: Aim: The prevalence and diversity of qnr-carrying isolates among (fluoro-)quinolone (FQ)-resistant, commensal E. coli from the German annual antimicrobial resistance monitoring in livestock and food in 2017 was determined. The data will be used to understand mechanisms involved in FQ-resistance development and the diversity of mobile genetic elements associated with their spread. Methods: A total of 3,409 E. coli isolates from the German National Reference Laboratory for Antimicrobial Resistance was investigated. Antimicrobial resistance testing was conducted by broth microdilution according to CLSI guidelines. MIC values for ciprofloxacin and nalidixic acid were evaluated using EUCAST epidemiological cut-off values. Isolates exhibiting resistances to FQ were subjected to qnr-PCR, XbaI-/S1-PFGE, whole genome sequencing (WGS) and bioinformatics analysis. Results: Overall, 504 isolates were classified as quinolone-resistant, while only 107 of them harbored a qnr gene. XbaI-macrorestriction demonstrated a high heterogeneity, letting us assume that no predominant E. coli lineages are associated with FQ resistance development in Germany. S1-PFGE analysis showed a variety of extrachromosomal elements of various sizes. Short-read WGS revealed qnr to be associated with bla as well as with the disinfectant qacEΔ1. The most abundant plasmid replicon type among our identified qnr reference plasmids were IncN, IncY and IncX1-IncX3. Further, we frequently detected chromosomal point mutations leading to an altered susceptibility against FQs. Conclusions: qnr genes were shown to be carried by multiple plasmid types and in frequent association with other resistance genes. This diversity of qnr plasmids in combination with their multi-resistance demonstrates the risk associated with qnr positive E. coli.
Polar decomposition of the Wiener measure: Schwarzian theory versus conformal quantum mechanics
Creators: name: Belokurov, Vladimir V.
name: Shavgulidze, Evgeniy T.
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We derive the explicit form of the polar decomposition of the Wiener measure, and obtain the equation connecting functional integrals in conformal quantum mechanics to those in the Schwarzian theory. Using this connection we evaluate some nontrivial functional integrals in the Schwarzian theory and also find the fundamental solution of the Schroedinger equation in imaginary time in the model of conformal quantum mechanics.
description: some typos are corrected
Additional file 2: of Gaucher disease: single gene molecular characterization of one-hundred Indian patients reveals novel variants and the most prevalent mutation
Creators: name: Jayesh Sheth
name: Riddhi Bhavsar
name: Mehul Mistri
name: Dhairya Pancholi
name: Bavdekar, Ashish
name: Ashwin Dalal
name: Prajnya Ranganath
name: Katta M Girisha
name: Shukla, Anju
name: Phadke, Shubha
name: Puri, Ratna
name: Inusha Panigrahi
name: Anupriya Kaur
name: Muranjan, Mamta
name: Goyal, Manisha
name: Ramadevi, Radha
name: Shah, Raju
name: Nampoothiri, Sheela
name: Danda, Sumita
name: Chaitanya Datar
name: Kapoor, Seema
name: Bhatwadekar, Seema
name: Frenny Sheth
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Biochemical analysis of the Gaucher Disease patients. The plasma chitotriosidase enzyme activity and Î˛-Glucosidase enzyme activity were checked using the standard protocol. (DOCX 17 kb)
Thermal Transport in One Dimensional Electronic Fluid
Creators: name: Samanta, R.
name: Protopopov, I. V.
name: Mirlin, A. D.
name: Gutman, D. B.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We study thermal conductivity for one-dimensional electronic fluid. The many-body Hilbert space is partitioned into bosonic and fermionic sectors that carry the thermal current in parallel. For times shorter than bosonic Umklapp time, the momentum of Bose and Fermi components are separately conserved, giving rise to the ballistic heat propagation and imaginary heat conductivity proportional to $T / iω$. The real part of thermal conductivity is controlled by decay processes of fermionic and bosonic excitations, leading to several regimes in frequency dependence. At lowest frequencies or longest length scales, the thermal transport is dominated by L{é}vy flights of low-momentum bosons that lead to a fractional scaling, $ω^{-\frac{1}{3}}$ and $L^{1/3}$, of heat conductivity with the frequency $ω$ and system size $L$ respectively.
description: 14 pages (including Appendix), 4 figures, v2: references added, typos corrected
A Measurement of Rb using a Double Tagging Method
Creators: name: The OPAL Collaboration
name: al, G. Abbiendi et
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: The fraction of Z to bbbar events in hadronic Z decays has been measured by the OPAL experiment using the data collected at LEP between 1992 and 1995. The Z to bbbar decays were tagged using displaced secondary vertices, and high momentum electrons and muons. Systematic uncertainties were reduced by measuring the b-tagging efficiency using a double tagging technique. Efficiency correlations between opposite hemispheres of an event are small, and are well understood through comparisons between real and simulated data samples. A value of Rb = 0.2178 +- 0.0011 +- 0.0013 was obtained, where the first error is statistical and the second systematic. The uncertainty on Rc, the fraction of Z to ccbar events in hadronic Z decays, is not included in the errors. The dependence on Rc is Delta(Rb)/Rb = -0.056*Delta(Rc)/Rc where Delta(Rc) is the deviation of Rc from the value 0.172 predicted by the Standard Model. The result for Rb agrees with the value of 0.2155 +- 0.0003 predicted by the Standard Model.
description: 42 pages, LaTeX, 14 eps figures included, submitted to European Physical Journal C
Techniques for computing two-loop QCD corrections to b-->c transitions
Creators: name: Czarnecki, Andrzej
name: Melnikov, Kirill
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We have recently presented the complete O(alpha_s^2) corrections to the semileptonic decay width of the b quark at maximal recoil. Here we discuss various technical aspects of that calculation and further applications of similar methods. In particular, we describe an expansion which facilitates the phase space integrations and the treatment of the mixed real-virtual corrections, for which Taylor expansion does not work and the so-called eikonal expansion must be employed. Several terms of the expansion are given for the O(alpha_s^2) QCD corrections to the differential semileptonic decay width of the b --quark at maximal recoil. We also demonstrate how the light quark loop corrections to the top quark decay rate can be obtained using the same methods. We briefly discuss the application of these techniques to the calculation of the O(alpha_s^2) correction to zero recoil sum rules for heavy flavor transitions.
description: 22 pages, revtex
Ginsenoside Re protects against kainate-induced neurotoxicity in mice by attenuating mitochondrial dysfunction through activation of the signal transducers and activators of transcription 3 signaling
Creators: name: Nguyen, Yen Nhi Doan
name: Jeong, Ji Hoon
name: Sharma, Naveen
name: Tran, Ngoc Kim Cuong
name: Tran, Hoang-Yen Phi
name: Dang, Duy-Khanh
name: Park, Jung Hoon
name: Byun, Jae Kyung
name: Ko, Sung Kwon
name: Nah, Seung-Yeol
name: Kim, Hyoung-Chun
name: Shin, Eun-Joo
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Physiology
subject: Science Policy
subject: Immunology
subject: FOS: Clinical medicine
subject: Infectious Diseases
subject: FOS: Health sciences

description: It was demonstrated that ginsenosides exert anti-convulsive potentials and interleukin-6 (IL-6) is protective from excitotoxicity induced by kainate (KA), a model of temporal lobe epilepsy. Ginsenosides-mediated mitochondrial recovery is essential for attenuating KA-induced neurotoxicity, however, little is known about the effects of ginsenoside Re (GRe), one of the major ginsenosides. In this study, GRe significantly attenuated KA-induced seizures in mice. KA-induced redox changes were more evident in mitochondrial fraction than in cytosolic fraction in the hippocampus of mice. GRe significantly attenuated KA-induced mitochondrial oxidative stress (i.e. increases in reactive oxygen species, 4-hydroxynonenal, and protein carbonyl) and mitochondrial dysfunction (i.e. the increase in intra-mitochondrial Ca2+ and the decrease in mitochondrial membrane potential). GRe or mitochondrial protectant cyclosporin A restored phospho-signal transducers and activators of transcription 3 (STAT3) and IL-6 levels reduced by KA, and the effects of GRe were reversed by the JAK2 inhibitor AG490 and the mitochondrial toxin 3-nitropropionic acid (3-NP). Thus, we used IL-6 knockout (KO) mice to investigate whether the interaction between STAT3 and IL-6 is involved in the GRe effects. Importantly, KA-induced reduction of manganese superoxide dismutase (SOD-2) levels and neurodegeneration (i.e. astroglial inhibition, microglial activation, and neuronal loss) were more prominent in IL-6 KO than in wild-type (WT) mice. These KA-induced detrimental effects were attenuated by GRe in WT and, unexpectedly, IL-6 KO mice, which were counteracted by AG490 and 3-NP. Our results suggest that GRe attenuates KA-induced neurodegeneration via modulating mitochondrial oxidative burden, mitochondrial dysfunction, and STAT3 signaling in mice.
Transport, multifractality, and the breakdown of single-parameter scaling at the localization transition in quasiperiodic systems
Creators: name: Sutradhar, Jagannath
name: Mukerjee, Subroto
name: Pandit, Rahul
name: Banerjee, Sumilan
Publisher: name: arXiv
Year: 2018
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences
subject: 82D30

description: There has been a revival of interest in localization phenomena in quasiperiodic systems with a view to examining how they differ fundamentally from such phenomena in random systems. Mo- tivated by this, we study transport in the quasiperiodic, one-dimentional (1d) Aubry-Andre model and its generalizations to 2d and 3d. We study the conductance of open systems, connected to leads, as well as the Thouless conductance, which measures the response of a closed system to boundary perturbations. We find that these conductances show signatures of a metal-insulator transition from an insulator, with localized states, to a metal, with extended states having (a) ballistic transport (1d), (b) superdiffusive transport (2d), or (c) diffusive transport (3d); precisely at the transition, the system displays sub-diffusive critical states. We calculate the beta function $β(g) = dln(g)/dln(L)$ and show that, in 1d and 2d, single-parameter scaling is unable to describe the transition. Further- more, the conductances show strong non-monotonic variations with L and an intricate structure of resonant peaks and subpeaks. In 1d the positions of these peaks can be related precisely to the prop- erties of the number that characterizes the quasiperiodicity of the potential; and the L-dependence of the Thouless conductance is multifractal. We find that, as d increases, this non-monotonic de- pendence of g on L decreases and, in 3d, our results for $β(g)$ are reasonably well approximated by single-parameter scaling.
description: 13 pages, 6 figures
Exact Criterion for Determining Clustering vs. Reentrant Melting Behavior for Bounded Interaction Potentials
Creators: name: Likos, C. N.
name: Lang, A.
name: Watzlawek, M.
name: Lowen, H.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Materials Science (cond-mat.mtrl-sci)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We examine in full generality the phase behavior of systems whose constituent particles interact by means of potentials which do not diverge at the origin, are free of attractive parts and decay fast enough to zero as the interparticle separation r goes to infinity. By employing a mean field-density functional theory which is shown to become exact at high temperatures and/or densities, we establish a criterion which determines whether a given system will freeze at all temperatures or it will display reentrant melting and an upper freezing temperature.
description: 5 pages, 3 figures, submitted to PRL on March 29, 2000 New version: 10 pages, 9 figures, forwarded to PRE on October 16, 2000
Online Learning with Ensembles
Creators: name: Urbanczik, R.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: Supervised online learning with an ensemble of students randomized by the choice of initial conditions is analyzed. For the case of the perceptron learning rule, asymptotically the same improvement in the generalization error of the ensemble compared to the performance of a single student is found as in Gibbs learning. For more optimized learning rules, however, using an ensemble yields no improvement. This is explained by showing that for any learning rule $f$ a transform $\tilde{f}$ exists, such that a single student using $\tilde{f}$ has the same generalization behaviour as an ensemble of $f$-students.
description: 8 pages, 1 figure. Submitted to J.Phys.A
DIFFERENT SEQUENCING AND ASSEMBLY APPROACHES INFLUENCING THE DETECTION OF PLASMIDS AND ANTIMICROBIAL RESISTANCE GENES IN COMMENSAL ESCHERICHIA COLI
Creators: name: Juraschek, Katharina
name: Borowiak, Maria
name: Tausch, S. H.
name: Malorny, Burkhard
name: Käsbohrer, Annemarie
name: Otani, Saria
name: Schwarz, Stefan
name: Meemken, Diana
name: Deneke, Carlus
name: Hammerl, Jens Andre
Publisher: name: Zenodo
Year: 2021

description: Aim: We investigated different sequencing and assembling methods regarding their ability to detect resistance genes and predict the association to mobile genetic elements as plasmids in E. coli. Methods: Five E. coli isolates with distinct resistance profiles and diverse plasmid contents were characterized in detail by antimicrobial susceptibility testing, XbaI-/ S1-PFGE profiling, and filter mating studies. The biological characteristics of the isolates were compared with in silico predictions using different sequencing strategies. Raw reads were generated using the Illumina NextSeq, the long-read systems PacBio Sequel and MinION. The reads were used individually or in combinations to assess appropriate workflows for reliable in silico-based typing purposes. Results: Long-reads alone were shown to be error-prone, affecting the annotation of genes and the prediction of small plasmids. However, their use represented the best option to generate genome-scaffolds. Short-reads were reliable for detecting resistance genes, but were not suitable for linking specific resistance determinants to the chromosome or to plasmid types. Moreover, short-read sequencing missed duplicated resistance genes. The use of hybrid-assemblies led to the best consensus between in silico and in vitro results, as all duplications and small plasmids were predicted and provided closed plasmid for allmost all extrachromosomal elements. Conclusions: Hybrid assembling provided a thorough overview on extrachromosomal DNA elements, associated with antimicrobial resistances and detailed insights into the genomes genetic composition. Overall, it will be worth extending the routine sequence diagnostic to hybrid sequencing, when a reference-grade complete bacterial genome is aimed, or extrachromosomal structures needs to be fully understood.
Additional file 11: of Design and methods of the ‘monitoring outcomes of psychiatric pharmacotherapy’ (MOPHAR) monitoring program – a study protocol
Creators: name: Simoons, Mirjam
name: Ruhé, Henricus
name: Roon, Eric
name: Schoevers, Robert
name: Bruggeman, Richard
name: Cath, Daniëlle
name: Muis, Diny
name: Arends, Johan
name: Bennard Doornbos
name: Mulder, Hans
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: Table S11. MOPHAR monitoring protocol valproic acid (DOCX 17 kb)
Development of a whole genome sequencing method for Hepatitis E Virus
Creators: name: Hakze - van der Honing, R. W.
name: Harders, F
name: van der Poel, W.H.M.
Publisher: name: Zenodo
Year: 2021
Subjects: Hepatitis E Virus
Whole genome sequencing

description: Hepatitis E virus (HEV) genotype 3 is a zoonotic virus. HEV has a relatively high genetic diversity and its classification can best be done by whole genome sequencing. So far, to obtain the virus complete sequence a high concentration of HEV is needed. Our aim is to develop a sample processing protocol for recovery of enough RNA from HEV positive target samples of different origin and concentrations.
Additional file 1: of Gaucher disease: single gene molecular characterization of one-hundred Indian patients reveals novel variants and the most prevalent mutation
Creators: name: Jayesh Sheth
name: Riddhi Bhavsar
name: Mehul Mistri
name: Dhairya Pancholi
name: Bavdekar, Ashish
name: Ashwin Dalal
name: Prajnya Ranganath
name: Katta M Girisha
name: Shukla, Anju
name: Phadke, Shubha
name: Puri, Ratna
name: Inusha Panigrahi
name: Anupriya Kaur
name: Muranjan, Mamta
name: Goyal, Manisha
name: Ramadevi, Radha
name: Shah, Raju
name: Nampoothiri, Sheela
name: Danda, Sumita
name: Chaitanya Datar
name: Kapoor, Seema
name: Bhatwadekar, Seema
name: Frenny Sheth
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: List of primers used for GBA1 gene sequencing. The exons and the exon-intron boundaries of both the genes were bidirectionally sequenced using the given set of primers. (DOC 32 kb)
Defying inertia: how rotating superconductors generate magnetic fields
Creators: name: Hirsch, J. E.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: I discuss the process of magnetic field generation in rotating superconductors in simply connected and multiply connected geometries. In cooling a normal metal into the superconducting state while it is rotating, electrons slow down or speed up depending on the geometry and their location in the sample, apparently defying inertia. I argue that the conventional theory of superconductivity does not explain these processes. Instead, the theory of hole superconductivity does. Its predictions agree with experimental observations of Hendricks, King and Rohrschach for solid and hollow cylinders.
description: A section was added (IX)
Association of poly(rC)-binding protein-2 with sideroflexin-3 through TOM20 as an iron entry pathway to mitochondria
Creators: name: Mi, Danyang
name: Yanatori, Izumi
name: Zheng, Hao
name: Kong, Yingyi
name: Hirayama, Tasuku
name: Toyokuni, Shinya
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Physiology
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Iron is essential for all the lives and mitochondria integrate iron into heme and Fe-S clusters for diverse use as cofactors. Here, we screened mitochondrial proteins in KU812 human chronic myelogenous leukemia cells by glutathione S-transferase pulldown assay with PCBP2 to identify mitochondrial receptors for PCBP2, a major cytosolic Fe(II) chaperone. LC–MS analyses identified TOM20, sideroflexin-3 (SFXN3), SFXN1 and TOM70 in the affinity-score sequence. Stimulated emission depletion microscopy and proteinase-K digestion of mitochondria in HeLa cells revealed that TOM20 is located in the outer membrane of mitochondria whereas SFXN3 is located in the inner membrane. Although direct association was not observed between PCBP2 and SFXN3 with co-immunoprecipitation, proximity ligation assay demonstrated proximal localization of PCBP2 with TOM20 and there was a direct binding between TOM20 and SFXN3. Single knockdown either of PCBP2 and SFXN3 in K562 leukemia cells significantly decreased mitochondrial catalytic Fe(II) and mitochondrial maximal respiration. SFXN3 but not MFRN1 knockout (KO) in mouse embryonic fibroblasts decreased FBXL5 and heme oxygenase-1 (HO-1) but increased transferrin uptake and induced ferritin, indicating that mitochondrial iron entry through SFXN3 is distinct. MFRN1 KO revealed more intense mitochondrial Fe(II) deficiency than SFXN3 KO. Insufficient mitochondrial heme synthesis was evident under iron overload both with SFXN3 and MFRN KO, which was partially reversed by HO-1 inhibitor. Conversely, SFXN3 overexpression caused cytosolic iron deficiency with mitochondrial excess Fe(II), which further sensitized HeLa cells to RSL3-induced ferroptosis. In conclusion, we discovered a novel pathway of iron entry into mitochondria from cytosol through PCBP2-TOM20-SFXN3 axis.
Additional file 1: of Design and methods of the ‘monitoring outcomes of psychiatric pharmacotherapy’ (MOPHAR) monitoring program – a study protocol
Creators: name: Simoons, Mirjam
name: Ruhé, Henricus
name: Roon, Eric
name: Schoevers, Robert
name: Bruggeman, Richard
name: Cath, Daniëlle
name: Muis, Diny
name: Arends, Johan
name: Bennard Doornbos
name: Mulder, Hans
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: Table S1. MOPHAR protocol for baseline/yearly screening (DOCX 19 kb)
Forensic Similarity for Digital Images
Creators: name: Mayer, Owen
name: Stamm, Matthew C.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Image and Video Processing (eess.IV)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: In this paper we introduce a new digital image forensics approach called forensic similarity, which determines whether two image patches contain the same forensic trace or different forensic traces. One benefit of this approach is that prior knowledge, e.g. training samples, of a forensic trace are not required to make a forensic similarity decision on it in the future. To do this, we propose a two part deep-learning system composed of a CNN-based feature extractor and a three-layer neural network, called the similarity network. This system maps pairs of image patches to a score indicating whether they contain the same or different forensic traces. We evaluated system accuracy of determining whether two image patches were 1) captured by the same or different camera model, 2) manipulated by the same or different editing operation, and 3) manipulated by the same or different manipulation parameter, given a particular editing operation. Experiments demonstrate applicability to a variety of forensic traces, and importantly show efficacy on "unknown" forensic traces that were not used to train the system. Experiments also show that the proposed system significantly improves upon prior art, reducing error rates by more than half. Furthermore, we demonstrated the utility of the forensic similarity approach in two practical applications: forgery detection and localization, and database consistency verification.
description: 16 pages, Accepted for publication with IEEE T-IFS (IEEE Transactions on Information Forensics and Security, 2019)
Additional file 12: of Design and methods of the ‘monitoring outcomes of psychiatric pharmacotherapy’ (MOPHAR) monitoring program – a study protocol
Creators: name: Simoons, Mirjam
name: Ruhé, Henricus
name: Roon, Eric
name: Schoevers, Robert
name: Bruggeman, Richard
name: Cath, Daniëlle
name: Muis, Diny
name: Arends, Johan
name: Bennard Doornbos
name: Mulder, Hans
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: Table S12. MOPHAR monitoring protocol lamotrigine (DOCX 17 kb)
Fourier analysis of real-time, high-statistics solar neutrino observations
Creators: name: Fogli, G. L.
name: Lisi, E.
name: Montanino, D.
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Solar neutrino oscillations with wavelengths comparable to the Earth-Sun distance provide a viable explanations of the long-standing solar neutrino deficit. They imply a time-dependent modulation of the solar neutrino flux due to the eccentricity of the Earth orbit. Motivated by this testable prediction, we propose a Fourier analysis of the signal observable in real-time, solar neutrino experiments. We give the general expressions of the Fourier coefficients and of their correlated uncertainties in the presence of background. The expressions assume a particularly compact form in the case of two-flavor neutrino oscillations in vacuum. We discuss the sensitivity to the lowest harmonics of the new-generation, high-statistics experiments SuperKamiokande, Sudbury Neutrino Observatory, and Borexino.
description: 10 pages (RevTeX) + 1 figure (postscript); requires epsfig.sty
ALISHER NAVOIY RUBOIYLARIDA BADIIY SAN`ATLAR
Creators: name: Dadajonova, Durdonaxon
name: Karimov, Obidjon
Publisher: name: Zenodo
Year: 2024

description: Ushbu  maqolada  o`zbek  adabiy  tilining  asoschisi  Alisher Navoiyning  ruboiylarida  qo`llanilgan  badiiy  san`atlar  va  ularning  o`rni, asarga bo`lgan  mazmuniy  ta`sirini  yoritib  berishga  harakat  qilingan.
A measurement of the branching fractions of the f1(1285) and f1(1420) produced in central pp interactions at 450 GeV/c
Creators: name: The WA102 Collaboration
name: al, D. Barberis et
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: A study of the f1(1285) and f1(1420) produced in central pp interactions has been performed. For the first time in a single experiment the branching fractions of both mesons in all major decay modes have been determined. Both the f1(1285) and f1(1420) are consistent with being produced by double Pomeron exchange.
description: 15 pages, Latex, 5 Figures, submitted to Physics Letters B
On the renormalization of a generalized supersymmetric version of the maximal Abelian gauge
Creators: name: Capri, M. A. L.
name: Terin, R. C.
name: Toledo, H. C.
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In this work we present an algebraic proof of the renormazibility of the super-Yang-Mills action quantized in a generalized supersymmetric version of the maximal Abelian gauge. The main point stated here is that the generalized gauge depends on a set of infinity gauge parameters in order to take into account all possible composite operators emerging from the dimensionless character of the vector superfield. At the end, after the removal of all ultraviolet divergences, it is possible to specify values to the gauge parameters in order to return to the original supersymmetric maximal Abelian gauge, first presented in Phys. Rev. D91, no. 12, 125017 (2015), Ref. [1].
description: 26 pages, no figures, new references added
title: Systematic review on the impacts of agricultural interventions on food security and nutrition in complex humanitarian emergency settings
Creators: name: Al Daccache, Melodie
name: Abi Zeid, Berthe
name: Hojeij, Leila
name: Baliki, Ghassan
name: Brück, Tilman
name: Ghattas, Hala
Publisher: name: Humboldt-Universität zu Berlin
Year: 2024
Subjects: subject: Systematic review
subject: Nutrition-sensitive
subject: Agriculture
subject: Food security
subject: Nutrition
subject: Health
subject: Complex and humanitarian emergency settings
subject: 610 Medizin und Gesundheit

description: Complex humanitarian emergencies are a main driver of food and nutritional insecurity. Agricultural interventions are key to improving nutrition and food security, and their positive impacts are well-documented in stable developing countries. However, it is unclear if their positive effects on food security hold in complex emergency settings, too. In this paper, we systematically review empirical articles that apply rigorous designs to assess the causal impacts of agricultural interventions on food security, nutrition, or health outcomes in complex humanitarian emergencies. We only find six articles matching these criteria, which have mixed results on dietary diversity and food security, and little evidence on child nutrition. Our review underscores the need for more rigorous research on the impacts of agricultural interventions in complex humanitarian emergency settings.
title: Avant-propos_Le Jardin de l'instituteur, de l'ouvrier, de l'amateur
Creators: name: AmateurS
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020

description: Avant-propos
description: ID_PARA_00604
Reviewing antimicrobial resistance and drug usage systems in the Human, Animal and Food Sector in six European countries.
Creators: name: Mesa-Varona, O
name: Tenhagen, B-A
Publisher: name: Zenodo
Year: 2021

description: Antimicrobial resistance (AMR) has been identified as a significant threat to public health in human and animal sector and antimicrobial use (AMU) as a main trigger of AMR.. Surveillance and monitoring systems are essential to control and assess the trends. However, the presence of different standardization systems among the countries and sectors makes comparisons problematic. A literature review was performed in 2018 using PubMed (to identify relevant peer reviewed articles) and internet (to identify national and European databases), using the following search terms: “antimicrobial resistance”, “antimicrobial use”, ”Spain”, ”Germany”, ”UK”, “United Kingdom”, “Scotland”, “Wales”, “England”, “Northern Ireland”, “Netherlands”, “France”, “Norway”, “Europe”, “food”, “human”, “animal”, “surveillance”, “system” and “monitoring”. Additionally, a questionnaire asking for detailed information on any available AMR and AMU database in each country was developed and sent to all collaborating institutes for completion. On the AMU section, the lack of standardization between countries and sectors has been encountered defining the data source (prescription/sales) and the units (Kg, mg/PCU, DDD/1000inpatients/days, DDD/1000beds/day, DDD/1000 STAR-PU among others). In addition, some limitations have been detected in the AMR section being the sample type (clinical/non-clinical), the units (MIC/SIR/IZ), the standard used (EUCAST/CLSI among others), the interpretation criteria (epidemiological or clinical) and finally the laboratory method (disk diffusion, microdilution, VITEC, among others). The One Health approach requires some harmonization among the human, animal and food systems within and between the different countries. There is a wealth of information available, but lack of harmonization limits the usability of data substantially. AMR and AMU analyses among sectors and countries should be done with caution and efforts should be undertaken to improve standardization.