cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Experience and change
Creators: name: Williams, Eric K.
Publisher: name: No Publisher Supplied
Year: 2015

description: This case study examines the development of a psychoanalyst’s theoretical orientation and subsequent shift in technique due to the challenging dynamics of a difficult patient. As a result of the patient's early trauma in parental relationships, he adopted the defensive position of being an "exception" to his dysfunctional history. At the same time he developed feelings of intense shame. New knowledge was gained through analysis of the initial failed technical approach of transference interpretation, and subsequent redirection to the patient's needs vis-a -vis gaining understanding of the patient's implicit memory exhibited through behavior in the treatment relationship. The main goal of this case study is to demonstrate the value of a phenomenological perspective when used in conjunction with psychoanalytic technique in order to gain a more in-depth understanding of the treatment relationship as well as the needs of the patient.
Additional file 1: of Direct conversion of human fibroblasts to functional excitatory cortical neurons integrating into human neural networks
Creators: name: Giedre Miskinyte
name: Karthikeyan Devaraju
name: Hansen, Marita GrĂ¸Nning
name: Monni, Emanuela
name: Tornero, Daniel
name: Woods, Niels
name: Bengzon, Johan
name: Ahlenius, Henrik
name: Lindvall, Olle
name: Kokaia, Zaal
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Molecular Biology
subject: Neuroscience
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: List of primers/probes used in qPCR analysis. (DOCX 91 kb)
Trichomyia puntarenas Araujo & Bravo, sp. nov.
Creators: name: Araújo, Maíra Xavier
name: Bravo, Freddy
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Psychodidae
Trichomyia
Trichomyia puntarenas

description: Trichomyia puntarenas Araújo & Bravo sp. nov.
(Figs. 6A–F)
Diagnosis. Gonostylus slightly bifurcate apically, sclerotized; m-cu present; two pairs of curved apically truncate projections in the aedeagal complex; ejaculatory apodeme the same length as gonostylus.
Description. Male. Head subcircular in frontal view. Antenna with 13 flagellomeres; scape subcylindrical and pedicel subspherical; flagellomeres pyriform and eccentric; ascoids 1.3 times the length of flagellomere (Fig. 6A); 13th flagellomere subcylindrical with terminal apiculus separated by a suture (Fig. 6C). Palpus formula 1.0:0.5:0.7 (Fig. 6B). Wing. R4+5 with base unsclerotized, r-m unsclerotized and m-cu present (Fig. 6D). Male terminalia: Hypandrium and gonocoxites fused, with medial posterior expansion. Arm of gonocoxite pilose with bristles along the medial margin. Gonostylus projected diagonally toward the apex, with slowly bifurcated apex. One pair of curved projections in the aedeagal complex truncated apically. Aedeagus simple ending near the base of the projections in the aedeagal complex. Ejaculatory apodeme the same length as gonostylus (Fig. 6F). Epandrium pilose, apically wider than basally. Cercus pilose, subtriangular. Hypoproct with apical micropilosity (Fig. 6E).
Female. Unknown.
Material examined. Costa Rica, Puntarenas, Monteverde, Est. Biol. Monteverde, 28. IV–01.V.97, holotype ♂, L.W. Quate (MZFS).
Etymology. The epithet puntarenas is based on the type locality
Distribution. Costa Rica.
description: Published as part of Araújo, Maíra Xavier & Bravo, Freddy, 2016, Description of fourty four new species, taxonomic notes and identification key to Neotropical Trichomyia Haliday in Curtis (Diptera: Psychodidae, Trichomyiinae), pp. 1-76 in Zootaxa 4130 (1) on pages 21-22, DOI: 10.11646/zootaxa.4130.1.1, http://zenodo.org/record/262717
Additional file 1: of Direct conversion of human fibroblasts to functional excitatory cortical neurons integrating into human neural networks
Creators: name: Giedre Miskinyte
name: Karthikeyan Devaraju
name: Hansen, Marita GrĂ¸Nning
name: Monni, Emanuela
name: Tornero, Daniel
name: Woods, Niels
name: Bengzon, Johan
name: Ahlenius, Henrik
name: Lindvall, Olle
name: Kokaia, Zaal
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Molecular Biology
subject: Neuroscience
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy
subject: Mental Health

description: List of primers/probes used in qPCR analysis. (DOCX 91 kb)
Additional file 3: Figure S2. of Decoy TRAIL receptor CD264: a cell surface marker of cellular aging for human bone marrow-derived mesenchymal stem cells
Creators: name: Madsen, Sean
name: Russell, Katie
name: H. Tucker
name: Glowacki, Julie
name: Bunnell, Bruce
name: OâConnor, Kim
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Hematology

description: Positive control for expression of p21 (PDF 122 kb)
Gaultheria suborbicularis W. W. Smith
Creators: name: Fritsch, Peter W.
name: Armstrong, Kate E.
name: Aung, Mu Mu
name: Fujikawa, Kazumi
name: Lu, Lu
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Ericales
Ericaceae
Gaultheria
Gaultheria suborbicularis

description: 22. Gaultheria suborbicularis W.W.Smith in Anonymous (1914: 186).
≡ Chiogenes suborbicularis (W.W.Sm.) Ching ex T.Z. Hsu (1984: 40).
Type:— CHINA. Yunnan: Western Yunnan, 15,000 ft, F. Kingdon-Ward 850 (lectotype, designated by Fritsch et al. 2008, E E00231017!, isolectotype E E00231018!).
description: Published as part of Fritsch, Peter W., Armstrong, Kate E., Aung, Mu Mu, Fujikawa, Kazumi & Lu, Lu, 2023, Gaultheria (Ericaceae) of Myanmar: an updated species list for the country, a new species, and a new species combination, pp. 37-61 in Phytotaxa 595 (1) on page 54, DOI: 10.11646/phytotaxa.595.1.3, http://zenodo.org/record/7889451
Trichomyia tritruncula
Creators: name: Araújo, Maíra Xavier
name: Bravo, Freddy
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Psychodidae
Trichomyia
Trichomyia tritruncula

description: tritruncula group
Species of this group have three digitiform processes at the apex of each cercus.
description: Published as part of Araújo, Maíra Xavier & Bravo, Freddy, 2016, Description of fourty four new species, taxonomic notes and identification key to Neotropical Trichomyia Haliday in Curtis (Diptera: Psychodidae, Trichomyiinae), pp. 1-76 in Zootaxa 4130 (1) on page 22, DOI: 10.11646/zootaxa.4130.1.1, http://zenodo.org/record/262717
Additional file 10: Figure S8. of Zebrafish knockout of Down syndrome gene, DYRK1A, shows social impairments relevant to autism
Creators: name: Oc-Hee Kim
name: Cho, Hyun-Ju
name: Han, Enna
name: Hong, Ted
name: Ariyasiri, Krishan
name: Choi, Jung-Hwa
name: Kyu-Seok Hwang
name: Jeong, Yun-Mi
name: Se-Yeol Yang
name: Yu, Kweon
name: Doo-Sang Park
name: Oh, Hyun-Woo
name: Davis, Erica
name: Schwartz, Charles
name: Jeong-Soo Lee
name: Hyung-Goo Kim
name: Cheol-Hee Kim
Publisher: name: Figshare
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Social cohesion in different group sizes and water depths in the shoaling assay. (A) Schematic illustrations of the method to measure the distances between individual fish in the shoaling assay. Different numbers of fish were used as a group, ranging from 3 to 7. Social cohesion was represented as a mean distance of individual fish in the group. (B, C) Mean distance between individuals (cm) in a fish group represents the degree of social cohesion. The mean distance for social cohesion was analyzed in 2 different conditions; 1) different group sizes (B) and 2) water depths and volume (C). Number of trials for each experiment: n = 7. Data are presented as mean ± SEM. (PDF 1086 kb)
Surface modification of biodegradable and biocompatible polymer scaffolds with multifunctional self-assembled monolayers for the controlled and specific adhesion of the biomolecules
Creators: name: Anand, Prachi S.
Publisher: name: No Publisher Supplied
Year: 2015

description: Dynamic surfaces can be customized to form a multifunctional assembly that favors the adsorption of the proteins and the sugar molecules in a one pot reaction and provides a control over the orientation and conformation of the bioactive ligands on the synthetic surface. Self-assembled monolayers   SAMs), bearing bifunctional groups grant a straightforward, flexible and simplistic method to overcome the limitations posed by a biopolymer-peptide system. These bifunctional moieties on one terminus can be adhered to the synthetic biopolymer that acts as a scaffold for the assembly and on the other terminus can be tailored to attach to highly specific biomolecules such as peptides and carbohydrates . In a novel synthesis, the SAMs can be attached to the different biomolecules by multicomponent reactions (MCR). MCRs are the chemical reactions in which three or more reactants form a product. Although, these reactions have been known for a long time, but have yet to be used in the synthesis of the biological components that mimic the extracellular matrix (ECM).
Additional file 10: Figure S8. of Zebrafish knockout of Down syndrome gene, DYRK1A, shows social impairments relevant to autism
Creators: name: Oc-Hee Kim
name: Cho, Hyun-Ju
name: Han, Enna
name: Hong, Ted
name: Ariyasiri, Krishan
name: Choi, Jung-Hwa
name: Kyu-Seok Hwang
name: Jeong, Yun-Mi
name: Se-Yeol Yang
name: Yu, Kweon
name: Doo-Sang Park
name: Oh, Hyun-Woo
name: Davis, Erica
name: Schwartz, Charles
name: Jeong-Soo Lee
name: Hyung-Goo Kim
name: Cheol-Hee Kim
Publisher: name: Figshare
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Mental Health

description: Social cohesion in different group sizes and water depths in the shoaling assay. (A) Schematic illustrations of the method to measure the distances between individual fish in the shoaling assay. Different numbers of fish were used as a group, ranging from 3 to 7. Social cohesion was represented as a mean distance of individual fish in the group. (B, C) Mean distance between individuals (cm) in a fish group represents the degree of social cohesion. The mean distance for social cohesion was analyzed in 2 different conditions; 1) different group sizes (B) and 2) water depths and volume (C). Number of trials for each experiment: n = 7. Data are presented as mean ± SEM. (PDF 1086 kb)
Gaultheria (sect. Chiogenopsis) (ser. Hispidulae) Airy Shaw 1941
Creators: name: Fritsch, Peter W.
name: Armstrong, Kate E.
name: Aung, Mu Mu
name: Fujikawa, Kazumi
name: Lu, Lu
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Ericales
Ericaceae
Gaultheria

description: Classification — Gaultheria sect. Chiogenopsis D.J. Middleton (1991: 235) ser. Hispidulae Airy Shaw (1941: 308).
Phylogenetic placement — Chiogenopsis clade.
Literature —This publication.
Myanmar specimen— Kachin: [Putao District, Nawngmun Township, Hkakaborazi National Park,] Nam Tamai Valley, Ka Karpo Razi, 28°15’N, 97°30’E, 12,000 ft, 10 October 1937, F. Kingdon-Ward 13406 (BM BM013823044!*).
Notes —Although the collection F. Kingdon-Ward 13406 was made in 1937, prior to the publication of the literature sources cited in the present list, apparently the authors of these sources did not see this specimen. This species is thus newly recorded for Myanmar.
description: Published as part of Fritsch, Peter W., Armstrong, Kate E., Aung, Mu Mu, Fujikawa, Kazumi & Lu, Lu, 2023, Gaultheria (Ericaceae) of Myanmar: an updated species list for the country, a new species, and a new species combination, pp. 37-61 in Phytotaxa 595 (1) on page 54, DOI: 10.11646/phytotaxa.595.1.3, http://zenodo.org/record/7889451
Essays on innovation and finance
Creators: name: Bostan, Ibrahim
Publisher: name: No Publisher Supplied
Year: 2015

description: The focus of this dissertation is on the interactions of real and financial decisions. First, I investigate the role of minority equity purchases on the innovation activities of the US firms. I provide evidence of an increased innovation activity following minority equity purchases targeting firms with a small size patent portfolio prior to acquisition.  Using a hand collected data I show that the positive effect of minority equity purchases is nonexistent when there is no simultaneous cash transfer to the target firm. Target firms in minority acquisitions increase their innovation while a matched sample of firms in the same industry with similar technological stock and having similar size show no increases in the innovation performance. I also show that firms which are financially constrained prior to the minority acquisition increase their innovation afterwards.  Second, I try to address the question that whether insiders who know about success/failure probabilities of innovation projects ahead of outside investors trade on this private information? This study finds that insiders' purchases in large firms precede the patent application for important innovation. US publicly held large firms increase their innovation quality, as measured by non-self citations received per patent applied, by 25% subsequent to the share purchase of top insiders. An event study analysis is conducted to understand the stock price reaction to the important innovations. I provide the evidence that the average cumulative abnormal returns of insiders on their purchases prior to the important patent applications are economically large and significant especially in the long run. The study also show that the positive price reaction to important innovations only occurs when insiders purchases their firm's stock and stock prices react negatively to the application or grant of the important breakthroughs. The use of private information by insiders seems to be less prevalent in firms with better corporate governance. Firm innovation quality also deteriorates after insiders sell their share in the company. The results are robust to changing the econometric methods employed, controlling for time and firm fixed effects as well as stock return and other firm characteristics.
Developing automated applications for clustering and outlier detection
Creators: name: Byrnes, Paul Eric
Publisher: name: No Publisher Supplied
Year: 2015

description: Occupational fraud is viewed as a growing, global problem, and solutions are thus needed.  Furthermore, since passage of Statement on Auditing Standards (SAS) 99, auditors have been held to a higher standard relative to audit quality.  More specifically, auditors are now required to consider the risks of material misstatement due to fraud throughout the entire audit process.  Interestingly, clustering has emerged as one method for addressing this challenge.    Unfortunately, a set of difficulties exists in implementing data mining in practice, such as complexities relative to data pre-processing, algorithm selection, and model evaluation schemes.  Given this, the traditionally trained auditor is ill-equipped to effectively perform clustering in the context of the financial statement audit.  Given the likelihood that clustering will become ubiquitous in the auditing and accounting domains of the future, accounting professionals should be positioned to effectively use data mining in fulfillment of their responsibilities.  One possibility for achieving this involves substantial automation of the clustering routine.  In this way, many of the historically manual decision points within the process can be eliminated, thus making it a more user friendly task.  In so doing, practitioners could then focus on problem investigation and resolution, instead of being burdened with technical nuances of clustering operations.     In this dissertation, efforts are made to progressively automate clustering and outlier detection.  This is done via auditing credit card customer data.  First, cluster analysis is performed to generate an initial set of partitions.  Next, each group is evaluated using various mechanisms to note whether nested clusters exist.  Following this, a method for identifying irregularities is proposed and implemented.  Overall, results demonstrate clustering and outlier detection can provide utility in the auditing of organizational assets.  In conclusion, findings are synthesized and two distinct applications are created.  These are provided as implementable artifacts as well as proofs of concept demonstrating feasibility of automating clustering and outlier detection routines.  It is hoped auditors see value potential in this type of software, and ultimately find such programs to offer both ease of use and perceived usefulness when investigating fraud in audit engagements.
The impact of violence exposure on psychosocial outcomes
Creators: name: D'Inverno, Ashley Schappell
Publisher: name: No Publisher Supplied
Year: 2015

description: Research has shown that traumatic events, including violence exposure, are associated with deleterious outcomes (Scarpa, 2003). While this has been studied extensively in the community, there has been very little attention to a population forced to live in an environment in which violence is common – jail. The present dissertation research examines the impact of violence exposure on a variety of psychological and behavioral variables. The research opens with three studies, two of which use a sample of ex-offenders, and concludes with a longitudinal study assessing jail inmates. The first study (Study 1) examines the effect of violence exposure on aggression in a sample of emerging adults. Results show those with more exposure to violence endorse aggressive beliefs, which leads to increased levels of aggression. In Study 2, I survey a group of males recently released from prison about their experiences with sexual assault and murder in prison and determine their association to psychiatric symptoms post-incarceration. The results provide support for the detrimental impact of prison violence on symptoms of anxiety and post-traumatic stress. Study 3 evaluates the relation between pre-incarceration mental health problems, feelings of safety during incarceration, and victimization during incarceration in a group of formerly incarcerated males. It further examines how these variables affect psychosocial adjustment during re-entry. The results indicate all three examined variables are uniquely associated with psychosocial difficulties. The final study, Study 4, investigates experiences before, during, and after jail to examine their relation to mental health functioning and recidivism. Four hundred male and female adult inmates were recruited to participate in a 16-week study. During this time period, surveys were administered at four separate times: Wave 1) Within the first three months of admission to jail; Wave 2) Five weeks after Wave 1; Wave 3) Six weeks after Wave 2; Wave 4) Approximately one month post-release. Recidivism data was collected for all participants. Overall, the results suggest that violence exposure, both during incarceration and in the community, negatively impacts mental and behavioral health; however, exposure to violence, in jail or in the community, did not increase the likelihood of recidivism.
Trichomyia itabunensis Bravo
Creators: name: Araújo, Maíra Xavier
name: Bravo, Freddy
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Psychodidae
Trichomyia
Trichomyia itabunensis

description: Trichomyia itabunensis Bravo
Trichomyia itabunensis Bravo, 2002: 58 –59, figs. 1–6.
Comments. Males of T. itabunensis are recognized by the curved arm of gonocoxite, C-shaped. Process digitigorm at apex of cercus with spiniform bristles. Two pairs of projections in the aedeagal complex, one larger and more sclerotized than other. Ejaculatory apodeme long, 4.0 times the length of gonostylus.
Material examined. Brazil, Bahia: Itabuna (Reserva Ecológica CEPEC), holotype ♂, 10.X.1985, P. S. Terra leg. (MZFS).
Distribution. Brazil—Bahia.
description: Published as part of Araújo, Maíra Xavier & Bravo, Freddy, 2016, Description of fourty four new species, taxonomic notes and identification key to Neotropical Trichomyia Haliday in Curtis (Diptera: Psychodidae, Trichomyiinae), pp. 1-76 in Zootaxa 4130 (1) on page 22, DOI: 10.11646/zootaxa.4130.1.1, http://zenodo.org/record/262717
Additional file 4: Figure S3. of Decoy TRAIL receptor CD264: a cell surface marker of cellular aging for human bone marrow-derived mesenchymal stem cells
Creators: name: Madsen, Sean
name: Russell, Katie
name: H. Tucker
name: Glowacki, Julie
name: Bunnell, Bruce
name: OâConnor, Kim
Publisher: name: Figshare
Year: 2017
Subjects: subject: Cell Biology
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Hematology

description: Immunophenotype of MSC cultures from older donors with low and high CD264 surface expression (PDF 113 kb)
Playing politics with disease
Creators: name: Harmsen, Jennifer E.
Publisher: name: No Publisher Supplied
Year: 2015

description: During the 1918 influenza pandemic nearly fifty million people perished worldwide from the flu virus, including 675,000 in the United States and 22,000 in the state of New Jersey alone. While the Department of Health of the State of New Jersey acted swiftly to the pandemic by issuing mandatory closings of all public gathering places, the municipality of Newark, under the leadership of Mayor Charles P. Gillen, chose not to adhere entirely to the quarantines. Of the 29,000 Newarkers who were stricken with the flu, 2,800 people died within three months. Gillen paid little attention to the numbers during the influenza crisis and took an anomalous approach in handling a contagious disease. Even as the figures continuously conveyed that more people were contracting influenza, Gillen still refused to follow national and state quarantines that would have shut down his city fully to prevent the spread of disease. Conscious of his own political standing in the time of Prohibition, Gillen defined his mayoral practices by his politics rather than by the people who were suffering from disease. While seemingly satisfying his constituents’ thirst for liquor by allowing saloons to stay open in order to distribute alcohol for “medicinal purposes,” ordinary citizens were dying in his city. Over ten percent of the deaths from influenza in the state of New Jersey occurred in Newark. While no one could have predicted where the greatest numbers of deaths would take place, Gillen’s political handling of the influenza crisis in Newark is reminiscent of how much one person could impact the health care of a city and calls into question whether some of the causalities from influenza in Newark could have been prevented.
On blowup techniques and the pluricomplex Green's function
Creators: name: Jiang, Shuai
Publisher: name: No Publisher Supplied
Year: 2015

description: The pluricomplex Green's functions on a compact K ahler manifold have been extensively studied over the past decades. Following and generalizing the blow up techniques in [PS12], we use pluripotential  theory to show the existence and uniqueness of pluricomplex Green's functions with two types of prescribed singularities at a  finite number of interior points.
MOESM1 of DAF-shielded baculovirus-vectored vaccine enhances protection against malaria sporozoite challenge in mice
Creators: name: Iyori, Mitsuhiro
name: Yamamoto, Daisuke
name: Miako Sakaguchi
name: Mizutani, Masanori
name: Sota Ogata
name: Hidesato Nishiura
name: Tamura, Takahiko
name: Matsuoka, Hiroyuki
name: Yoshida, Shigeto
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Figure S1. Schematic representation of pFast-Spider. Table S1. Primers used in this study. Supplementary materials and methods.
Gaultheria thymifolia Stapf ex Airy Shaw 1941
Creators: name: Fritsch, Peter W.
name: Armstrong, Kate E.
name: Aung, Mu Mu
name: Fujikawa, Kazumi
name: Lu, Lu
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Ericales
Ericaceae
Gaultheria
Gaultheria thymifolia

description: 23. Gaultheria thymifolia Stapf ex Airy Shaw (1941: 322).
Type:— MYANMAR. Kachin: [Myitkyina District, Chipwi Township,] NE Upper Burma, W flank of the N’Maikha-Salwin divide, 12,000 ft, 26°24’N, 98°48’E, June 1925, G. Forrest 26867 (holotype K K000227985!, isotypes AU045662!*, BM BM000834397!, E E00231094!, NY 02651432!, S 08-3001!*).
description: Published as part of Fritsch, Peter W., Armstrong, Kate E., Aung, Mu Mu, Fujikawa, Kazumi & Lu, Lu, 2023, Gaultheria (Ericaceae) of Myanmar: an updated species list for the country, a new species, and a new species combination, pp. 37-61 in Phytotaxa 595 (1) on page 54, DOI: 10.11646/phytotaxa.595.1.3, http://zenodo.org/record/7889451
Additional file 1: Table S1. of Sonic hedgehog (SHH) signaling improves the angiogenic potential of Wharton’s jelly-derived mesenchymal stem cells (WJ-MSC)
Creators: name: Zavala, Gabriela
name: Prieto, Catalina
name: Villanueva, Andrea
name: Palma, Verónica
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Hematology
subject: Plant Biology

description: RT-PCR and qPCR primers used in this study. All the primers were assayed with Tm = 60 °C. GAPDH primers used for RT-PCR and qRT-PCR were the same. (DOC 30 kb)
Mission critical logistics
Creators: name: Johnson, Andrew E.
Publisher: name: No Publisher Supplied
Year: 2015

description: Mission critical logistics focuses on the application of cutting edge project and supply chain management techniques to solve problems involving truncated timelines, where failure to meet such a timeline results in a substantial loss to business or mission effectiveness. This dissertation studies two exemplary topics in mission critical logistics – Game Transportation and Naval Logistics.    First, we explore transportation planning and scheduling for a real world, one-time mega sporting event, the Special Olympics 2014 USA Games. The Games were hosted in New Jersey where over 4,000 athletes and coaches competed in 16 sports spread out across 10 locations within a 40-mile radius. We designed timely, convenient, and reliable bus routes and schedules for thousands of people with intellectual disabilities to attend games and special events over eight days under a budget of $600K. We solved this transportation problem using a three-phase approach. Phase 1 optimizes the number and routes of shuttle-loops and buses required to efficiently transport athletes and coaches to competition venues using the enumeration method. Phase 2 sees the integration of the athletes proposed travel habits and a more focused volume estimation model detailed in hourly variations instead of a daily volume total. Finally, Phase 3 solves the shuttle-bus problem by developing a set of direct easy-to-follow routes.     Secondly, we diagnose a complex logistics network by analyzing historical data of a destroyer fleet for the US Navy. Naval logistics represents an important facet of mission critical logistics, as timing and inventory play a key role in the fulfillment of onboard parts while the ship is on deployment. A general problem that the US Navy has encountered is that critical parts, which make up part of the Aegis Ballistic Missile Defense System, have the potential to either malfunction or breakdown during an operation. We will extend the mission critical logistics domain by analyzing the fulfillment process for 17 US Navy destroyer’s. We will also evaluate the current logistics fulfillment performance of the Defense Logistics Agency, who in this scenario is the distributor to the US Navy, and identify potential drivers behind the performance.
Trichomyia tritruncula Quate
Creators: name: Araújo, Maíra Xavier
name: Bravo, Freddy
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Psychodidae
Trichomyia
Trichomyia tritruncula

description: Trichomyia tritruncula Quate
Trichomyia tritruncula Quate, 1996: 8 –9, figs. 2f–g.
Comments. Males of T. tritruncula are recognized by the curved arm of gonocoxite (= gonostylus by Quate, 1996) with bristles throughout its length. Process digitigorm in the apex of cercus without bristles. Ejaculatory apodeme short, 0.6 times the length of arm of gonocoxite.
Material examined. Type specimens were not examined
Distribution. Costa Rica.
description: Published as part of Araújo, Maíra Xavier & Bravo, Freddy, 2016, Description of fourty four new species, taxonomic notes and identification key to Neotropical Trichomyia Haliday in Curtis (Diptera: Psychodidae, Trichomyiinae), pp. 1-76 in Zootaxa 4130 (1) on page 22, DOI: 10.11646/zootaxa.4130.1.1, http://zenodo.org/record/262717
Survivor scripts and safety scripts in Lima, Peru
Creators: name: Leberatto, Antony Carlo
Publisher: name: No Publisher Supplied
Year: 2015

description: This study describes how the choices made by crime survivors (during victimization events) and potential victims of crimes (in order to remain safe) affect the outcomes of crimes, the daily routines of citizens and their views on their personal safety. Expanding upon the crime script framework (Cornish, 1994), it describes “survivor scripts” (the cognitive assessment and decision making process employed by citizens before, during and after a victimization event) and “safety scripts” (the cognitive assessment and decision making process employed by citizens to maintain safety). The choices made in these scripts are detailed through the integration of concepts related to “citizen insecurity” (fear and risk of crime), opportunity theories and placed within the context of a Latin American culture. These scripts come from the accounts of 100 citizens in Lima, Peru; a metropolis with one of Latin America’s highest victimization rates.     The study describes 14 different survivor script that describe the before during and after of the victimization events of robberies, burglaries, thefts, extortions, kidnappings, identity theft, assault, threats and vandalism. Before the victimizations, citizens employ precautions to procure their safety. During the victimizations, citizens are faced with decisions on how to react during their attacks based on their available choices and the constraints of their environments. After the victimizations, citizens make a number of choices concerning the reporting of the crime and how to prevent future victimizations. A safety script for the citizens of Lima was created; it includes the most common precautions employed by residents and divides them into 5 scenes containing 42 steps. All together, the analysis describes 72 home, 20 neighborhood and 215 personal categories of precautions. A combination of fear, risk assessments, cultural knowhow, crime experiences, victimization neutralization, informality and pragmatism inform the implementation of these protections.   Residents explain that citizen insecurity is incremented by the high rates of crimes, negative experiences with the police and distrust of citizens, along with their personal victimization accounts. Thus, citizens feel they are forced to adapt lengthy safety scripts in order to decrease their chances of victimization in the absence of institutionalized resources for crime prevention. This leaves many to plan for likely victimizations rather than to plan to prevent them. In order to improve security, citizens would like more police professionalism, an increase in methods of security across the city and cooperation between citizens, law enforcement and local governments.
Intracavity optogalvanic spectroscopy applied to  radiocarbon detection
Creators: name: Liu, Junming
Publisher: name: No Publisher Supplied
Year: 2015

description: Radiocarbon is extremely useful for archeological dating as well as for clinical, laboratory and atmospheric tracer applications. In this thesis, we report a new physical description of the ICOGS system process of radiocarbon optogalvanic signal extraction and analysis. To be specific, we first describe the fundamental theory of the Optogalvanic effect. Based on a set of 4-energy level rate equations for N2 buffer gas and a set of 2-energy level for CO2 sample gas, we simulate the N2 and CO2 ICOGS OG signals. Moreover, according to the phase difference from our simulation and experiment observation, we propose three methods (1.Vector Phase and Amplitude fitting, 2.Differential Method and 3.Vector Decomposition Method) to separate CO2 OG signal from N2 OG  signal. Experimental results demonstrate our quantitative radiocarbon detection near  10 zeptomole14C levels in 10 µg samples.
Evidence that elephants, bears, and sheep choose habitat by assessing environmental information across multiple spatial scales
Creators: name: Mashintonio, Andrew F.
Publisher: name: No Publisher Supplied
Year: 2015

description: Understanding the habitat preferences of large mammals is critical for their conservation and management. Resource selection functions (RSFs) can be used to assess these preferences, but they often only incorporate environmental information, such as percent tree cover, at a spatial resolution determined by the source of the data, i.e. satellite imagery. Organisms may respond to their surroundings at larger or smaller spatial scales, and thus the spatial scale of the data may be biologically irrelevant for the species in question. Instead, habitat selection should be assessed on a continuum of spatial scales to identify the ones that are most relevant to the organism. This can be accomplished by locally averaging, or smoothing, layers of environmental information to generate coarser representations of the organism’s surroundings.   In Chapter 2, I model habitat preferences of savannah elephants with and without multiple spatial scales. Models that incorporated multiple spatial scales performed better and made different predictions regarding the spatial distribution of high-quality habitat throughout a landscape. This chapter has been published in PeerJ (https://peerj.com/articles/504/).   The inclusion of multiple spatial scales for numerous environmental variables can lead to problems in model choice, as not all combinations of variables can be evaluated. In Chapter 3, I model habitat preferences of brown bears by first using the least absolute shrinkage and selection operator (lasso) to order the variables by their importance. I then fit models of increasing complexity by adding one variable at a time in reverse order of importance. I also incorporate the presence of neighboring individuals to account for the possible competitive exclusion of optimal habitat, but this was found not to affect the habitat chosen.    In Chapter 4, I determine whether individual desert bighorn sheep have different habitat preferences when they inhabit two mountain ranges with differing availability of freestanding water. For each environmental variable, both a full parameter and a ‘difference’ parameter are estimated, depending on where the sheep movement occurs. Different preferences were found for vegetation at multiple spatial scales, implying that bighorn sheep can utilize the moisture found within vegetation to survive when freestanding water is not available.
Trichomyia truncata
Creators: name: Araújo, Maíra Xavier
name: Bravo, Freddy
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Psychodidae
Trichomyia
Trichomyia truncata

description: truncata group
Species of this group present the arm of gonocoxite curved with elongate bristles inclinate; elongated gonostylus, bare, slightly sclerotized and truncate at apex.
description: Published as part of Araújo, Maíra Xavier & Bravo, Freddy, 2016, Description of fourty four new species, taxonomic notes and identification key to Neotropical Trichomyia Haliday in Curtis (Diptera: Psychodidae, Trichomyiinae), pp. 1-76 in Zootaxa 4130 (1) on page 22, DOI: 10.11646/zootaxa.4130.1.1, http://zenodo.org/record/262717
Research Protocol: Assessing Transparency in Dental AI Research
Creators: name: Sofi-Mahmudi, Ahmad
name: Uribe, Sergio E
name: Raittio, Eero
Publisher: name: OSF
Year: 2024
Subjects: subject: Artificial Intelligence
subject: Dental Research
subject: Dental Research Transparency
subject: Dentistry
subject: FOS: Clinical medicine
subject: Open Science
subject: Reproducibility in AI
subject: Research Practices
subject: Research Transparency

description: This research protocol aims to evaluate the transparency of AI research in dental journals by assessing the proportion of transparency indicators reported: code, data availability, conflict of interest disclosure, funding disclosue and protocol registration.
Additional file 1: Figure S1. of Zebrafish knockout of Down syndrome gene, DYRK1A, shows social impairments relevant to autism
Creators: name: Oc-Hee Kim
name: Cho, Hyun-Ju
name: Han, Enna
name: Hong, Ted
name: Ariyasiri, Krishan
name: Choi, Jung-Hwa
name: Kyu-Seok Hwang
name: Jeong, Yun-Mi
name: Se-Yeol Yang
name: Yu, Kweon
name: Doo-Sang Park
name: Oh, Hyun-Woo
name: Davis, Erica
name: Schwartz, Charles
name: Jeong-Soo Lee
name: Hyung-Goo Kim
name: Cheol-Hee Kim
Publisher: name: Figshare
Year: 2017
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Physiology
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Characterization of early neural development and larval behavioral tests in WT and dyrk1aa KO fish. (A-F) Whole-mount in situ hybridization analysis with various molecular markers at 24 hpf (A, B, lateral view) and 48 hpf (C-F, rostral dorsal view): sox2, neural stem cell marker; neurog1, neuronal determination marker; and cyclin D1, cell proliferation marker. Anterior is to the left. Number of fish used for the analysis: 1) after sox2 staining and photography, each embryo was genotyped for WT (5/19) and KO homozygote (3/19); 2) for neurog1, it was WT (6/16) and KO homozygote (4/16); and 3) for cyclin D1, WT (3/16) and KO homozygote (5/16), respectively. (G) Locomotion response to dark flashes in WT and dyrk1aa KO larvae at 6 dpf. Movement distance was measured by video tracking analysis (cm per every 10 s). With light-on in 30 s-intervals, zebrafish larvae showed a freezing response (yellow box in the graph). However, they showed a startle response to light-off dark condition (gray box). The number of fish used for this assay: n = 14 for WT (+/+), n = 25 for heterozygote (+/−), and n = 9 for KO homozygote (−/−). (H) Circadian rhythms in WT and dyrk1aa KO larvae between 5 and 7 dpf. Circadian rhythms of locomotor activity under LD (day-night) cycles were measured. Both WT and dyrk1aa KO larvae display a similar pattern of locomotor activity in daytime or nighttime. The number of fish used for this assay: n = 11 for control heterozygote (+/−), and n = 13 for KO homozygote (−/−). Data are presented as mean ± SEM. (PDF 1219 kb)
Evaluation of novel ideas
Creators: name: McCarthy, Marina
Publisher: name: No Publisher Supplied
Year: 2015

description: In the environment where companies seek to maximize their innovative ability by investing significant resources in the generation of creative ideas, effective idea evaluation becomes increasingly important.  To maximize potential benefits associated with the ideation investment, organizations must learn to consistently recognize the most appropriate and most advantageous ideas.  However, research indicates that despite continuous interest in creativity and innovation, companies are not as effective in optimizing their ideation portfolios. Furthermore, increasingly relevant cross-cultural differences in creativity introduce additional levels of complexity that still remain to be fully explored by creativity researchers and management practitioners. My research looks to extend the knowledge of how individuals evaluate novel ideas and seeks to make a two-fold contribution to this line of research.  First, I construct and test a theoretical model depicting relationships among key dimensions assessed as part of overall idea valuation.  Specifically, I examine how the degree of an idea’s novelty influences the perception of usefulness and how this dynamic translates into formulation of an overall assessment. Next, I examine the effect of culture on idea evaluation through the effect of cognitive and regulatory mechanisms on the perceived relationships among the key creativity dimensions.  In my research I find support for the proposed trade-off relationship between novelty and usefulness that contributes to an individual’s overall idea assessment.  Furthermore, this study provided preliminary evidence for the effect of culture on the relationships among novelty, usefulness, and value; however, the specific mechanisms that were proposed in the study were not supported. Overall, this dissertation contributes to the field of organizational creativity by identifying interrelationship among key dimensions of idea evaluation, novelty, and usefulness, and demonstrating how this relationship impacts an individual’s overall assessment of an idea.
Gaultheria (sect. Chiogenopsis) (ser. Trichophyllae) Airy Shaw 1941
Creators: name: Fritsch, Peter W.
name: Armstrong, Kate E.
name: Aung, Mu Mu
name: Fujikawa, Kazumi
name: Lu, Lu
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Ericales
Ericaceae
Gaultheria

description: Classification — Gaultheria sect. Chiogenopsis ser. Trichophyllae.
Phylogenetic placement — Trichophyllae clade.
Literature — Airy Shaw 1941, Kress et al. 2003, Fritsch et al. 2008, Fritsch & Lu 2020.
Myanmar specimens (in addition to the type) — Kachin: [Putao District, Khaunglanphu Township,] Chawchi Pass, 11,800 ft, 3 July 1920, R.J. Farrer 1677 (E E00231093!); [Putao District, Nawngmun Township, Hkakaborazi National Park,] Advance Base, Seinghku Wâng, 10,000–11,000 ft, 5 June 1926, F. Kingdon-Ward 6849 (K!); [Putao District, Nawngmun Township, Hkakaborazi National Park,] Adung Valley, 12,000–13,000 ft, 15 June 1931, F. Kingdon-Ward 9639 p.p. (A! mixed with G. obovata, BM BM 013823043!*); [Putao District, Khaunglanphu Township,] North Triangle (Tama Bum), 10,000 ft, 20 June 1953, F. Kingdon-Ward 21010 (A!, E E00197153!).
description: Published as part of Fritsch, Peter W., Armstrong, Kate E., Aung, Mu Mu, Fujikawa, Kazumi & Lu, Lu, 2023, Gaultheria (Ericaceae) of Myanmar: an updated species list for the country, a new species, and a new species combination, pp. 37-61 in Phytotaxa 595 (1) on page 54, DOI: 10.11646/phytotaxa.595.1.3, http://zenodo.org/record/7889451
MOESM1 of DAF-shielded baculovirus-vectored vaccine enhances protection against malaria sporozoite challenge in mice
Creators: name: Iyori, Mitsuhiro
name: Yamamoto, Daisuke
name: Miako Sakaguchi
name: Mizutani, Masanori
name: Sota Ogata
name: Hidesato Nishiura
name: Tamura, Takahiko
name: Matsuoka, Hiroyuki
name: Yoshida, Shigeto
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Figure S1. Schematic representation of pFast-Spider. Table S1. Primers used in this study. Supplementary materials and methods.
title: The colonial labour question: Trade and social expenditure in interwar Africa
Creators: name: Becker, Bastian
name: Schmitt, Carina
Publisher: name: Humboldt-Universität zu Berlin
Year: 2024
Subjects: subject: Colonialism
subject: social policy
subject: trade
subject: education
subject: health
subject: Africa
subject: 900 Geschichte, Geografie und Hilfswissenschaften

description: Access to education and health care are core development goals of the United Nations since its inception. Today, almost all countries have education and health systems in place. In former colonies, the historical roots of these systems can often be traced back to colonial times. In this article, we argue that spending on social services for the local population was seen as a necessary condition to expand the trade-based colonial economy especially in the initial stage of social services dating back to the interwar period. Using novel data on health and education expenditure in 35 former British and French African colonies during the height of their empires (1919–39), we show that trade volumes account for a large share in the variance of expenditure on education but not health services, and that present-day expenditures partly reflect these patterns. Our results suggest that similar mechanisms are at play within the two empires and differences between them are in degree rather than in kind.
Multidimensional decision making
Creators: name: Mills-Finnerty, Colleen
Publisher: name: No Publisher Supplied
Year: 2015

description: One of the most significant questions about the nature of brain function is the extent to which brain networks are functionally constrained in terms of the task contexts in which they respond, versus whether their function is highly flexible across contexts (McIntosh, 2000). Thanks to decades of animal and human research, one of the most well defined networks in the brain is the corticostriatal circuit. The finding that dopamine neurons in this circuit respond to mismatches between expectations and outcomes in choice tasks according to a reinforcement learning (RL) algorithm (Shultz, 1997) helped orient the field of decision neuroscience towards studying RL type responses in the brain.  Nearly all of these kinds of studies necessite choice tasks with concrete outcomes, in which subjects do something and get something, in order to have both expectation and outcome terms for RL modeling. However, far less attention has been paid to choice contexts that are abstract, that is, there are no expectations or outcomes. Additionally, most reward stimuli used to test decision making response are constrained by low dimensionality. This approach has left open several key questions about how the brain responds to abstract, multidimensional choices, and whether this response is modulated by factors such as choice context, subjective value, stimulus valence, and stimulus attributes in a manner that is the same or different from the well characterized response to these factors in concrete contexts.  In a series of studies, this dissertation addresses the following unresolved questions: Study 1: How do brain regions associated with reward (e.g. striatum) and value (e.g. prefrontal cortex) respond when people choose amongst stimuli that are abstract and multidimensional?  Study 2:  How is this response affected by changes in choice context and stimulus valence?  Study 3: How do value signals in the brain influence similarity coding of abstract reinforcers?