cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Emission of photon multiplets by a dc-biased superconducting circuit
Creators: name: Ménard, G. C.
name: Peugeot, A.
name: Padurariu, C.
name: Rolland, C.
name: Kubala, B.
name: Mukharsky, Y.
name: Iftikhar, Z.
name: Altimiras, C.
name: Roche, P.
name: Sueur, H. le
name: Joyez, P.
name: Vion, D.
name: Esteve, D.
name: Ankerhold, J.
name: Portier, F.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We observe the emission of bunches of $k \geqslant 1$ photons by a circuit made of a microwave resonator in series with a voltage-biased tunable Josephson junction. The bunches are emitted at specific values $V_k$ of the bias voltage, for which each Cooper pair tunneling across the junction creates exactly k photons in the resonator. The latter is a micro-fabricated spiral coil which resonates and leaks photons at 4.4~GHz in a measurement line. Its characteristic impedance of 1.97~k$Ω$ is high enough to reach a strong junction-resonator coupling and a bright emission of the k-photon bunches. We show that a RWA treatment of the system accounts quantitatively for the observed radiation intensity, from $k=1$ to $6$, and over three orders of magnitude when varying the Josephson energy $E_J$. We also measure the second order correlation function of the radiated microwave to determine its Fano factor $F_k$, which in the low $E_J$ limit, confirms with $F_k=k$ the emission of $k$ photon bunches. At larger $E_J$, a more complex behavior is observed in quantitative agreement with numerical simulations.
Improving young people's health through youth-friendly primary care services
Creators: name: Haller, Dagmar M.
Publisher: name: Université de Genève
Year: 2013
Subjects: info:eu-repo/classification/ddc/613
info:eu-repo/classification/ddc/618
Primary Care
Family Practice
Adolescent health
Youth-friendly Services
Health services research

description: Adolescence is a time of opportunity in which individuals acquire new skills and behaviours that will influence their entire life. It is also a period of life in which most of the disease burden is preventable. Providing appropriate care and promoting a healthy lifestyle in adolescence has the potential to modify the current epidemiological trend which places noncommunicable diseases, mental disorders and injuries at the top of the list of disorders affecting the world's population. As most young people are in contact with primary care providers, these are ideally placed to address the current and future burden of disease in this age-group. This thesis presents a framework for providing youth-friendly primary care services and discusses steps taken to develop such services and provide the evidence of their impact on young people's health.
Radical prostatectomy and pelvic lymph node dissection for organ-confined prostate cancer. Preoperative planning, surgical technique and outcomes
Creators: name: Mattei, Agostino
Publisher: name: Université de Genève
Year: 2013
Subjects: info:eu-repo/classification/ddc/617
Prostate cancer
Pelvic lymph node dissection
Imaging
Surgical technique

description: Prostate cancer (PCa) is worldwide the second most common cancer and the sixth leading cause of cancer mortality among men. Its increasing diagnosis at the localized stage and the improved effectiveness of treatments has led to increased survival. Current treatment modalities for localized PCa are surgery (radical prostatectomy [RP]) or radiotherapy (external irradiation and brachytherapy). Lastly, considering early and late complications associated with these treatments and the attendant risk of mortality, the alternative regimen of active surveillance (AS) is indicated for selected low-risk patients. RP is the recommended curative procedure for patients with low and intermediate-risk localized PCa (cT1a-T2b, Gleason score ≤7 and PSA <20 ng/mL) and a life expectancy of at least 10 years (level of evidence [LE]: 1b). The first objective of RP is oncological radicality, the second preservation of urinary continence and erectile function. Preoperative assessment of PCa tumour stage (intracapsular or extraprostatic disease), grade and localisation is crucial for surgical planning. These data are useful in choosing the side (none, monolateral or bilateral) and extent (minimal, partial or full) of the nerve sparing procedure and which patients may benefit from a pelvic lymph-node dissection (PLND). In the preoperative setting, magnetic resonance imaging (MRI) is recommended for local staging of PCa. Due to the limitations of imaging techniques, PLND is currently the most accurate and reliable technique for assessing lymph node metastasis in high risk patients applying nomograms for lymph node invasion. PLND for PCa should be extended beyond the external and obturator regions and the portions medial and lateral to the internal iliac vessels to include also the common iliac lymph nodes at least up to the ureteric crossing. RP may be performed as classical open RP, laparoscopic or robot-assisted (RARP) RP. The current literature suggests that RARP is a valid technique for treatment of localised PCa, reporting similar oncologic outcomes versus other approaches with advantages in terms of perioperative complications, urinary continence and sexual function recovery rate. 3 However, its role in patients with high risk or locally advanced disease has not yet been defined. Due to limited follow-up time, data on survival and cancer-specific mortality are not available: further research with long-term outcomes are required.
Swin Transformer V2: Scaling Up Capacity and Resolution
Creators: name: Liu, Ze
name: Hu, Han
name: Lin, Yutong
name: Yao, Zhuliang
name: Xie, Zhenda
name: Wei, Yixuan
name: Ning, Jia
name: Cao, Yue
name: Zhang, Zheng
name: Dong, Li
name: Wei, Furu
name: Guo, Baining
Publisher: name: arXiv
Year: 2021
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: Large-scale NLP models have been shown to significantly improve the performance on language tasks with no signs of saturation. They also demonstrate amazing few-shot capabilities like that of human beings. This paper aims to explore large-scale models in computer vision. We tackle three major issues in training and application of large vision models, including training instability, resolution gaps between pre-training and fine-tuning, and hunger on labelled data. Three main techniques are proposed: 1) a residual-post-norm method combined with cosine attention to improve training stability; 2) A log-spaced continuous position bias method to effectively transfer models pre-trained using low-resolution images to downstream tasks with high-resolution inputs; 3) A self-supervised pre-training method, SimMIM, to reduce the needs of vast labeled images. Through these techniques, this paper successfully trained a 3 billion-parameter Swin Transformer V2 model, which is the largest dense vision model to date, and makes it capable of training with images of up to 1,536$\times$1,536 resolution. It set new performance records on 4 representative vision tasks, including ImageNet-V2 image classification, COCO object detection, ADE20K semantic segmentation, and Kinetics-400 video action classification. Also note our training is much more efficient than that in Google's billion-level visual models, which consumes 40 times less labelled data and 40 times less training time. Code is available at \url{https://github.com/microsoft/Swin-Transformer}.
Correction to: Representation Growth and Rational Singularities of the Moduli Space of Local Systems
Creators: name: Aizenbud, Avraham
name: Avni, Nir
name: Rubio, Roberto
Publisher: name: arXiv
Year: 2021
Subjects: subject: Algebraic Geometry (math.AG)
subject: Group Theory (math.GR)
subject: Representation Theory (math.RT)
subject: FOS: Mathematics

description: We explain and correct a mistake in Section 2.6 and Appendix C of the first and second author's paper "Representation Growth and Rational Singularities of the Moduli Space of Local Systems" arXiv:1307.0371.
description: 3 pages, 2 figures, to appear in Inventiones Mathematicae
Additional file 2: of Multi-cohort analysis of colorectal cancer metagenome identified altered bacteria across populations and universal bacterial markers
Creators: name: Dai, Zhenwei
name: Coker, Olabisi
name: Nakatsu, Geicho
name: Wu, William
name: Zhao, Liuyang
name: Chen, Zigui
name: Chan, Francis
name: Kristiansen, Karsten
name: Sung, Joseph
name: Wong, Sunny
name: Yu, Jun
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Ecology
subject: Biological Sciences not elsewhere classified

description: Text Removing species with divergent abundance change directions. (DOCX 14Â kb)
Організація медичної допомоги пред­став­никам групи ризику по зараженню ВІЛ-інфекцією
Creators: name: Сергійович, Шевченко Олександр
Publisher: name: Zenodo
Year: 2002
Subjects: ВІЛ/СНІД
групи ризику
споживачі ін'єкційних наркотиків
працівники комерційного сексу
жінки секс-бізнесу
HIV/AIDS
risk groups
injecting drug users
commercial sex workers

description: Українською: [Шевченко О.С. Організація медичної допомоги пред­став­никам групи ризику по зараженню ВІЛ-інфекцією / О.С. Шевчен­ко // Матеріали роботи Обласного форуму «Освіта, наука, виробництво – шляхи інтеграції» (18-22 березня 2002 року, м. Харків), першої обласної конференції молодих науковців «Тобі, Харківщино – пошук молодих» (19-20 березня 2002 року, м. Харків, ХДМУ). – Секція 5 «Новітні біотехнології. Сучасна фармакологія. Медицина – діагностика і методика лікування» (20 березня 2002 року, 12.00-16.00). – Харків: Видавництво «Смарт», 2002. – С. 78. https://doi.org/10.5281/zenodo.3700871] Залучати до обстеження на ВІЛ представників груп ризику (споживачів ін’єкційних наркотиків, працівників комерційного сексу) медичним установам допомагають соціальні працівники та волонтери недержавних СНІД-сервісних організацій. Подолати епідемію ВІЛ/СНІДу має допомогти антиретровірусна терапія. Ключові слова: ВІЛ/СНІД, групи ризику, споживачі ін’єкційних наркотиків, працівники комерційного сексу, жінки секс-бізнесу. In English: [Shevchenko Alexander S. Organization of medical care for HIV-infected from among risk groups representatives / A.S. Shevchenko // Proceedings of the Regional Forum "Education, Science, Production - Ways of Integration" (March 18-22, 2002, Kharkiv), the 1st Regional Conference of Young Scientists "You, Kharkiv Region – Science Search of Young People" (March 19-20 2002, Kharkiv, KSMU). - Section 5 "Newest Biotechnology. Modern pharmacology. Medicine - diagnostics and treatment" (March 20, 2002, 12.00-16.00). - Kharkiv: Smart Publishing House, 2002. - P. 78. (Ukr.) https://doi.org/10.5281/zenodo.3700871] Social workers and volunteers from non-government AIDS-service organi­za­tions help attract of risk groups representatives (injecting drug users, commercial sex workers) into medical institutions for HIV testing. Antiretroviral therapy should help to overcome the HIV/AIDS epidemic. Keywords: HIV/AIDS, risk groups, injecting drug users, commercial sex workers.
Additional file 5: of Multi-cohort analysis of colorectal cancer metagenome identified altered bacteria across populations and universal bacterial markers
Creators: name: Dai, Zhenwei
name: Coker, Olabisi
name: Nakatsu, Geicho
name: Wu, William
name: Zhao, Liuyang
name: Chen, Zigui
name: Chan, Francis
name: Kristiansen, Karsten
name: Sung, Joseph
name: Wong, Sunny
name: Yu, Jun
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Table S1. (DOCX 14Â kb)
Additional file 6: of Multi-cohort analysis of colorectal cancer metagenome identified altered bacteria across populations and universal bacterial markers
Creators: name: Dai, Zhenwei
name: Coker, Olabisi
name: Nakatsu, Geicho
name: Wu, William
name: Zhao, Liuyang
name: Chen, Zigui
name: Chan, Francis
name: Kristiansen, Karsten
name: Sung, Joseph
name: Wong, Sunny
name: Yu, Jun
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Figure S5. Boxplot of the three species whose abundance significantly decreased between control, early-, and late-stage CRC (P < 0.05, *P < 0.01, **P < 0.001, ***). (PDF 342 kb)
Insights into the Anisotropic Spin-$S$ Kitaev Chain
Creators: name: Gordon, Jacob S.
name: Kee, Hae-Young
Publisher: name: arXiv
Year: 2021
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Recently there has been a renewed interest in properties of the higher-spin Kitaev models, especially their low-dimensional analogues with additional interactions. These quasi-1D systems exhibit rich phase diagrams with symmetry-protected topological phases, Luttinger liquids, hidden order, and higher-rank magnetism. However, the nature of the pure spin-$S$ Kitaev chains are not yet fully understood. Earlier works found a unique ground state with short-ranged correlations for $S = 1$, and an intriguing double-peak structure in the heat capacity associated with an entropy plateau. To understand the low-energy excitations and thermodynamics for general $S$ we study the anisotropic spin-$S$ Kitaev chain. Starting from the dimerized limit we derive an effective low-energy Hamiltonian at finite anisotropy. For half-integer spins we find a trivial effective model, reflecting a non-local symmetry protecting the degeneracy, while for integer $S$ we find interactions among the flux degrees of freedom that select a unique ground state. The effective model for integer spins is used to predict the low-energy excitations and thermodynamics, and we make a comparison with the semiclassical limit through linear spin wave theory. Finally, we speculate on the nature of the isotropic limit.
description: 12 pages, 4 figures
Additional file 7: of Multi-cohort analysis of colorectal cancer metagenome identified altered bacteria across populations and universal bacterial markers
Creators: name: Dai, Zhenwei
name: Coker, Olabisi
name: Nakatsu, Geicho
name: Wu, William
name: Zhao, Liuyang
name: Chen, Zigui
name: Chan, Francis
name: Kristiansen, Karsten
name: Sung, Joseph
name: Wong, Sunny
name: Yu, Jun
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Hematology

description: Figure S3. (A) Prediction performance of seven CRC-enriched bacteria using a single model. (B) Prediction performance of the optimized the model of the individual cohort. (PDF 524Â kb)
Eligibiilty Criteria
Creators: name: Rhon, Dan
name: Vraa, Derek
name: Young, Jodi L.
name: Junkin, Jennifer
Publisher: name: OSF Registries
Year: 2023

description: Randomized controlled trials that describe the use of manual therapy techniques for the treatment of low back pain will be included as part of the search. For the purpose of this review, our criteria for LBP will be “pain, muscle tension or stiffness localized below the costal margin and above the inferior gluteal folds, with or without associated leg pain.” Studies will be included in the review if 1) the study design is a randomized controlled trial 2) the study investigates adults, aged 18-65 years old with a diagnosis of LBP 3) the study is written or translated in English and 4) the study uses a manual therapy technique as a primary or comparator intervention to treat LBP (high-velocity, low amplitude thrust manipulation, non-thrust joint mobilization and muscle energy techniques). This review will only include techniques such as high-velocity, low amplitude thrust manipulation, non-thrust joint mobilization and muscle energy techniques. We will exclude any studies that describe any type of soft tissue mobilization, neural mobilization, acupressure, dry-needling or massage. Our search will be limited from the year 2005 through May 10th, 2023. Clinicaltrials.gov did not begin trial registration until February 29, 2000 and this allows for a five-year washout period for new trials starting after this period to be registered and published.
Optical response of the Leggett mode in multiband superconductors in the linear response regime
Creators: name: Kamatani, Takumi
name: Kitamura, Sota
name: Tsuji, Naoto
name: Shimano, Ryo
name: Morimoto, Takahiro
Publisher: name: arXiv
Year: 2021
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We study optical responses of Leggett modes in multiband superconductors in the linear response regime. The Leggett mode is a collective mode unique to multiband superconductors that arises from relative phase fluctuations of superconducting orders for different bands. We use the Ginzburg-Landau (GL) description to study the collective modes in multiband systems. We find that multiband superconductors generally allow a linear coupling between the Leggett mode and external electric fields due to the presence of a cross term between different components of superconducting orders in the GL theory. The presence of a linear coupling for the Leggett mode is in sharp contrast with the absence of that for Higgs (amplitude) modes in single-band superconductors that only support nonlinear optical responses such as third harmonic generation (THG). We further confirm such a linear coupling in multiband superconductors by a more microscopic description based on a diagrammatic approach. We study the collective modes within the random phase approximation (RPA) and compute their contribution to the linear optical conductivity. These findings suggest a new route to observe the Leggett mode by optical absorption.
description: 13 pages, 4 figures
Magnetic Field Universality of the Kondo Effect Revealed by Thermocurrent Spectroscopy
Creators: name: Hsu, Chunwei
name: Costi, Theo A.
name: Vogel, David
name: Wegeberg, Christina
name: Mayor, Marcel
name: van der Zant, Herre S. J.
name: Gehring, Pascal
Publisher: name: arXiv
Year: 2021
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Probing the universal low temperature magnetic field scaling of Kondo-correlated quantum dots via electrical conductance has proved to be experimentally challenging. Here, we show how to probe this in nonlinear thermocurrent spectroscopy applied to a molecular quantum dot in the Kondo regime. Our results demonstrate that the bias-dependent thermocurrent is a sensitive probe of universal Kondo physics, directly measures the splitting of the Kondo resonance in a magnetic field, and opens up possibilities for investigating nanosystems far from thermal and electrical equilibrium.
description: Published version, including Supplementary Material main text:6 pages, 4 figures. SI: 55 pages, 22 figures
Removal of acetaminophen and carbamazepine in single and binary systems with immobilized laccase from Trametes hirsuta
Creators: name: Hachi, Mohamed
name: Abdelmalek Chergui
name: Yeddou, Ahmed Reda
name: Selatnia, Ammar
name: Cabana, Hubert
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Neuroscience
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Laccase-based bioprocesses represent a fascinating prospective for the removal of contaminants of emerging concern in wastewaters. In this work, immobilized laccase from Trametes hirsuta was used to transform carbamazepine (CBZ) and acetaminophen (ACE) in spiked single and binary solutions. The effects of pH, time course and reaction pathways on the transformation were studied. T. hirsuta secreted only laccase. The immobilized laccase was able to degrade 40% and 70% of CBZ and ACE, respectively, in the binary system, while only 5% and 25% of transformation was achieved in the single system for ACE and CBZ, respectively. The maximum removal of acetaminophen was found at pH 7. These obtained results confirm that the acetaminophen is a good laccase mediator compound. The most probable pathway in the binary system involved the formation of acetaminophen dimers and ACE-ACE-CBZ oligomers.
Multiway Non-rigid Point Cloud Registration via Learned Functional Map Synchronization
Creators: name: Huang, Jiahui
name: Birdal, Tolga
name: Gojcic, Zan
name: Guibas, Leonidas J.
name: Hu, Shi-Min
Publisher: name: arXiv
Year: 2021
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: We present SyNoRiM, a novel way to jointly register multiple non-rigid shapes by synchronizing the maps relating learned functions defined on the point clouds. Even though the ability to process non-rigid shapes is critical in various applications ranging from computer animation to 3D digitization, the literature still lacks a robust and flexible framework to match and align a collection of real, noisy scans observed under occlusions. Given a set of such point clouds, our method first computes the pairwise correspondences parameterized via functional maps. We simultaneously learn potentially non-orthogonal basis functions to effectively regularize the deformations, while handling the occlusions in an elegant way. To maximally benefit from the multi-way information provided by the inferred pairwise deformation fields, we synchronize the pairwise functional maps into a cycle-consistent whole thanks to our novel and principled optimization formulation. We demonstrate via extensive experiments that our method achieves a state-of-the-art performance in registration accuracy, while being flexible and efficient as we handle both non-rigid and multi-body cases in a unified framework and avoid the costly optimization over point-wise permutations by the use of basis function maps.
Enzymatic hydrolysis of the Eisenia andrei earthworm: Characterization and evaluation of its properties
Creators: name: Rodrigues, Mariano
name: Carlesso, Wagner Manica
name: Kuhn, Daniel
name: Taciélen Altmayer
name: Martini, Maira Cristina
name: Tamiosso, Camila Durlo
name: Mallmann, Carlos Augusto
name: Claucia Fernanda Volken De Souza
name: Ethur, Eduardo Miranda
name: Lucélia Hoehne
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified

description: Some studies have carried out in order to retrieve proteins from the by-product of animal-processing industries. Earthworms are rich in protein and usually are used in animal feed. Thus, this study aimed to optimize the hydrolysis process of Eisenia andrei earthworms by employing Alcalase enzyme. Using the response surface methodology, we evaluated the following conditions: temperature, hydrolysis time, stirring speed, and enzyme/substrate ratio. The optimal conditions for the experimental design were determined through the analysis of the foaming and emulsifying properties, in vitro starch digestibility, and antioxidant activity. The results demonstrate that the highest degree of hydrolysis (i.e., 92%) was obtained under the following conditions: pH, 9.5; temperature, 25 °C; hydrolysis time, 2.25 h; stirring speed, 200 rpm; and enzyme/substrate ratio, 1.77%, using Alcalase enzyme. Evaluation of the amino acid composition under these conditions revealed higher concentrations of aspartic acid, glutamic acid, and leucine. The in vitro protein digestibility of the hydrolysate was approximately 73%. There were no significant improvements in either foam stability or emulsification after enzymatic hydrolysis. Additional studies on the antioxidant activity are required. This bioproduct could potentially serve as a promising supplementary food product.
Additional file 8: of Multi-cohort analysis of colorectal cancer metagenome identified altered bacteria across populations and universal bacterial markers
Creators: name: Dai, Zhenwei
name: Coker, Olabisi
name: Nakatsu, Geicho
name: Wu, William
name: Zhao, Liuyang
name: Chen, Zigui
name: Chan, Francis
name: Kristiansen, Karsten
name: Sung, Joseph
name: Wong, Sunny
name: Yu, Jun
Publisher: name: figshare
Year: 2018
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified

description: Figure S12. (A) Prediction performance of the SVM model on the testing folds using 10-fold cross validation. (B) Prediction performance of the SVM model on the testing cohort using â leave-one-cohort-outâ approach. (PDF 125Â kb)
Electric dipole moments of baryons with bottom quarks
Creators: name: Ünal, Y.
name: Severt, D.
name: de Vries, J.
name: Hanhart, C.
name: Meißner, Ulf-G.
Publisher: name: arXiv
Year: 2021
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Triggered by experimental prospects to measure electromagnetic dipole moments of baryons containing a bottom quark, we calculate the CP-odd electric dipole moments (EDMs) of spin-1/2 single-bottom baryons. We consider CP-violating dimension-six operators in the Standard Model Effective Field Theory that involve bottom quarks, and apply heavy-baryon chiral perturbation theory to compute the EDMs of several baryons. We discuss the expected size of the EDMs for beyond-the-Standard Model physics appearing at the TeV scale.
description: 20 pages, 1 figure, published version
Additional file 9: of Multi-cohort analysis of colorectal cancer metagenome identified altered bacteria across populations and universal bacterial markers
Creators: name: Dai, Zhenwei
name: Coker, Olabisi
name: Nakatsu, Geicho
name: Wu, William
name: Zhao, Liuyang
name: Chen, Zigui
name: Chan, Francis
name: Kristiansen, Karsten
name: Sung, Joseph
name: Wong, Sunny
name: Yu, Jun
Publisher: name: figshare
Year: 2018
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified

description: Figure S4. (A) The precision and its corresponding recall index under different cut-off. The optimal F1 score was also provided. (Bâ C) With 271 controls and 30 cases, simulate probabilities with AUCâ 0.80. Panel B shows a simulated precision and recall graph. Panel shows histogram of the optimal F1 scores with 500 simulations. (PDF 213Â kb)
High resolution microarray investigation in patients with developmental delay and/or multiple congenital anomalies: delineation of new candidates regions on the human genome
Creators: name: Sloan Bena, Frédérique
Publisher: name: Université de Genève
Year: 2013
Subjects: info:eu-repo/classification/ddc/576.5
array-CGH
intellectual disability
copy number variant

description: Constitutional chromosomal imbalance has been recognized, for a long time, as an important cause of congenital and developmental abnormalities including developmental delay (DD), intellectual disability (ID), autism spectrum disorders (ASD) and/or multiple congenital anomalies (MCA). The high-resolution array-based comparative genome hybridization (array CGH) has led to the detection of large numbers of copy number variants (CNVs) in patients with developmental delay and/or multiple congenital anomalies, as well as in healthy individuals, that challenges the interpretation of the clinical significance of detected CNVs in patients. The objective of this work is to present a retrospective review of array-CGH data of 482 children with unexplained intellectual disability +/- congenital abnormalities. This work reinforces the current status practice of array-based technology use for postnatal diagnosis and supports that it will replace standard cytogenetics as a first-line test for clinical evaluation in the population with ID +/- congenital abnormalities.
Equivalence between algorithmic instability and transition to replica symmetry breaking in perceptron learning systems
Creators: name: Zhao, Yang
name: Qiu, Junbin
name: Xie, Mingshan
name: Huang, Haiping
Publisher: name: arXiv
Year: 2021
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Machine Learning (stat.ML)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: Binary perceptron is a fundamental model of supervised learning for the non-convex optimization, which is a root of the popular deep learning. Binary perceptron is able to achieve a classification of random high-dimensional data by computing the marginal probabilities of binary synapses. The relationship between the algorithmic instability and the equilibrium analysis of the model remains elusive. Here, we establish the relationship by showing that the instability condition around the algorithmic fixed point is identical to the instability for breaking the replica symmetric saddle point solution of the free energy function. Therefore, our analysis would hopefully provide insights towards other learning systems in bridging the gap between non-convex learning dynamics and statistical mechanics properties of more complex neural networks.
description: 24 pages, 2 figures, revision to journal
how to install datapackage ssnibmg
Creators: name: Samanwoy Mukhopadhyay
name: Mohapatra, Saroj
Publisher: name: figshare
Year: 2017
Subjects: subject: 60102 Bioinformatics
subject: FOS: Computer and information sciences

description: microarray datapackage installation guide for ssnibmg
Automated computation of nerve fibre inclinations from 3D polarised light imaging measurements of brain tissue
Creators: name: Menzel, Miriam
name: Reuter, Jan A.
name: Gräßel, David
name: Costantini, Irene
name: Amunts, Katrin
name: Axer, Markus
Publisher: name: arXiv
Year: 2021
Subjects: subject: Biological Physics (physics.bio-ph)
subject: Medical Physics (physics.med-ph)
subject: FOS: Physical sciences

description: The method 3D polarised light imaging (3D-PLI) measures the birefringence of histological brain sections to determine the spatial course of nerve fibres (myelinated axons). While the in-plane fibre directions can be determined with high accuracy, the computation of the out-of-plane fibre inclinations is more challenging because they are derived from the strength of the birefringence signals (retardation), which depends e.g. on the amount of nerve fibres. One possibility to improve the accuracy is to consider the average transmitted light intensity (transmittance weighting). The current procedure requires effortful manual adjustment of parameters and anatomical knowledge. Here, we introduce an automated, optimised computation of the fibre inclinations, allowing for a much faster, reproducible determination of fibre orientations in 3D-PLI. Depending on the degree of myelination, the algorithm uses different models (transmittance-weighted, unweighted, or a linear combination), allowing to go beyond traditional definitions of white and grey matter and account for regionally specific behaviour. As the algorithm is parallelised and GPU optimised, and uses images from standard 3D-PLI (retardation and transmittance), it can be applied to large data sets, also from previous measurements. The functionality is demonstrated on unstained coronal and sagittal histological sections of vervet monkey and rat brains.
description: 15 pages, 7 figures
Approche psycho-sexuelle de l'interruption de grossesse
Creators: name: Bianchi-Demicheli, Francesco
Publisher: name: Université de Genève
Year: 2006
Subjects: info:eu-repo/classification/ddc/618

description: L'interruption de grossesse se trouve à l'interface de différentes problématiques complexes telles que le fonctionnement psychique, la capacité reproductive, le comportement sexuel, la relation de couple, la contraception et son échec, la planification des naissances et la grossesse. Il s'agit de problématiques de très grande importance qui ont chacune une implication multidimensionnelle touchant toutes les sociétés, la politique, l'économie, l'ensemble de l'humanité. L'idée qui a motivé et animé le développement de cette ligne de recherche a été celle d'investiguer la relation entre sexualité, interruption de grossesse et contraception en tenant compte des dynamiques psychologiques et sexologiques (psycho-sexuelles) qui l'animent.
Sclérectomie profonde: évaluation critique - Deep Sclerectomy: Critical Evaluation
Creators: name: Shaarawy, Tarek
Publisher: name: Université de Genève
Year: 2013
Subjects: info:eu-repo/classification/ddc/616.8
Glaucoma
Surgery
Eye
Optic nerve

description: Trabeculectomy has reigned supreme as the surgical procedure of choice for glaucoma management for many decades, never the less, our search for a procedure with improved safety and efficacy is persistent. Even though promising results have been reported, deep sclerectomy (DS), as a viable alternative, is not, hitherto, universally accepted.1-5 Deep sclerectomy is one type of non-penetrating glaucoma surgery (NPGS). The decisive advantage of NPGS is that it aims at achieving filtration through surgical dissection on the ocular surface, targeting the site of maximal resistance to the elimination of aqueous, without perforating the globe. By avoiding perforation, this type of surgery prevents the sudden decompression of the eye that is well established during penetrating glaucoma surgery. The breach of the eye's outer surface has been well implicated in many significant complications associated with penetrating glaucoma surgery. In essence, deep sclerectomy, and all types of NPGS, aims at the reduction of these serious complications, as well as the long-term control of intraocular pressure (IOP), thus preventing the deterioration in visual function of the glaucomatous patient. Despite its introduction many decades ago, the procedure failed to dethrone trabeculectomy as the gold standard of glaucoma surgery. Trabeculectomy remains, by far, the procedure with the widest practice among all types of glaucoma surgery. It is a procedure with a well-known track record of efficacy, in which most ophthalmic surgeons receive formal training and acquire wide experience. Never the less, DS has emerged as a viable option to trabeculectomy, mainly because of its well-documented safety profile. This review is an attempt to critically evaluate deep sclerectomy in terms of its histopathological basis, its varying techniques, safety profile and effectiveness. The review will also endeavor to investigate and evaluate issues hindering a wider practice of this surgical procedure.
ssnibmgdoc
Creators: name: Samanwoy Mukhopadhyay
name: Mohapatra, Saroj
Publisher: name: figshare
Year: 2017
Subjects: subject: 60102 Bioinformatics
subject: FOS: Computer and information sciences

description: contains Rcode, Metadata, howto.pdf and a vignette for installation and analysis of the ssnibmg data Package.
The Jordan-Hölder Theorem for Monoids with Group Action
Creators: name: Sebandal, Alfilgen
name: Vilela, Jocelyn P.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Rings and Algebras (math.RA)
subject: FOS: Mathematics

description: In this article, we prove an isomorphism theorem for the case of refinement $Γ$-monoids. Based on this we show a version of the well-known Jordan-Hölder theorem in this framework. The main theorem of this article states that - as in the case of modules - a monoid $T$ has a $Γ$-composition series if and only if it is both $Γ$-Noetherian and $Γ$-Artinian. As in module theory, these two concepts can be defined via ascending and descending chains respectively.
Data Set - Puerto Maldonado
Creators: name: Mendoza, Juana Del Valle
Publisher: name: figshare
Year: 2017
Subjects: subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Data set, arboviruses
"Emerging and Reemerging Arboviruses: A Threat of Epidemic Complications in the East of Peru.". PLOS Neglected Tropical Diseases
Puerto Maldonado
SwiftSRGAN -- Rethinking Super-Resolution for Efficient and Real-time Inference
Creators: name: Krishnan, Koushik Sivarama
name: Krishnan, Karthik Sivarama
Publisher: name: arXiv
Year: 2021
Subjects: subject: Image and Video Processing (eess.IV)
subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Computer and information sciences

description: In recent years, there have been several advancements in the task of image super-resolution using the state of the art Deep Learning-based architectures. Many super-resolution-based techniques previously published, require high-end and top-of-the-line Graphics Processing Unit (GPUs) to perform image super-resolution. With the increasing advancements in Deep Learning approaches, neural networks have become more and more compute hungry. We took a step back and, focused on creating a real-time efficient solution. We present an architecture that is faster and smaller in terms of its memory footprint. The proposed architecture uses Depth-wise Separable Convolutions to extract features and, it performs on-par with other super-resolution GANs (Generative Adversarial Networks) while maintaining real-time inference and a low memory footprint. A real-time super-resolution enables streaming high resolution media content even under poor bandwidth conditions. While maintaining an efficient trade-off between the accuracy and latency, we are able to produce a comparable performance model which is one-eighth (1/8) the size of super-resolution GANs and computes 74 times faster than super-resolution GANs.
description: 6 pages, 3 figures, "to be published in" International Conference on Intelligent Cybernetics Technology & Applications 2021 (ICICyTA)
Dynamics of bacteria scanning a porous environment
Creators: name: Irani, Ehsan
name: Mokhtari, Zahra
name: Zippelius, Annette
Publisher: name: arXiv
Year: 2021
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: It has recently been reported that bacteria, such as E.coli and P. putida, perform distinct modes of motion when placed in porous media as compared to dilute regions or free space. This has led us to suggest an efficient strategy for active particles in a disordered environment: reorientations are suppressed in locally dilute regions and intensified in locally dense ones. Thereby the local geometry determines the optimal path of the active agent and substantially accelerates the dynamics for up to two orders of magnitude. We observe a non-monotonic behavior of the diffusion coefficient in dependence on the tumbling rate and identify a localisation transition, either by increasing the density of obstacles or by decreasing the reorientation rate.
description: 5 pages, 5 figure. Movies can be accessed via: phi_obs0.4-sigmoid.webm: see https://nxcloud.omid.land/s/iDkDYGHwjczpZg9 phi_obs0.6-sigmoid.webm: see https://nxcloud.omid.land/s/eJQo8btyWQZ9nrA phi_obs0.4-uniform.webm: see https://nxcloud.omid.land/s/Fnp7cpGnm8JYqxX phi_obs0.6-uniform.webm: see https://nxcloud.omid.land/s/cBMgtL5QfYiXWZD
$f(\mathcal{G},T_{αβ}T^{αβ})$ Theory and Complex Cosmological Structure
Creators: name: Yousaf, Z.
name: Bhatti, M. Z.
name: Khan, S.
name: Sahoo, P. K.
Publisher: name: arXiv
Year: 2021
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The basic objective of this investigation is to explore the impact of a novel gravitational modification, specifically, the $f(\mathcal{G}, \mathbf{T}^2)$ (where $\mathbf{T}^2 \equiv T_{αβ}T^{αβ}$, $T^{αβ}$ denotes the stress-energy tensor) model of gravitation, upon the complexity of time-dependent dissipative as well as non-dissipative spherically symmetric celestial structures. To find the complexity factor $(\mathbb{C}_{\mathbf{F}})$ from the generic version of the structural variables, we performed Herrera's scheme for the orthogonal cracking of Riemann tensor. In this endeavor, we are mainly concerned with the issue of relativistic gravitational collapse of the dynamically relativistic spheres fulfilling the presumption of minimal $\mathbb{C}_{\mathbf{F}}$. The incorporation of a less restrictive condition termed as quasi-homologous $(\mathbb{Q}_{\mathbf{H}})$ condition together with the zero $\mathbb{C}_{\mathbf{F}}$, allows us to formulate a range of exact solutions for a particular choice of $f(\mathcal{G}, \mathbf{T}^2)$ model. We find that some of the given exact solutions relax the Darmois junction conditions and describe thin shells by satisfying the Israel conditions, while some exhibit voids by fulfilling the Darmois constraints on both boundary surfaces. Eventually, few expected applications of the provided solutions in the era of modern cosmology are debated.
description: Revision submitted to Physics of the Dark Universe
A Few-Shot Meta-Learning based Siamese Neural Network using Entropy Features for Ransomware Classification
Creators: name: Zhu, Jinting
name: Jang-Jaccard, Julian
name: Singh, Amardeep
name: Welch, Ian
name: AI-Sahaf, Harith
name: Camtepe, Seyit
Publisher: name: arXiv
Year: 2021
Subjects: subject: Cryptography and Security (cs.CR)
subject: FOS: Computer and information sciences

description: Ransomware defense solutions that can quickly detect and classify different ransomware classes to formulate rapid response plans have been in high demand in recent years. Though the applicability of adopting deep learning techniques to provide automation and self-learning provision has been proven in many application domains, the lack of data available for ransomware (and other malware)samples has been raised as a barrier to developing effective deep learning-based solutions. To address this concern, we propose a few-shot meta-learning based Siamese Neural Network that not only detects ransomware attacks but is able to classify them into different classes. Our proposed model utilizes the entropy feature directly extracted from ransomware binary files to retain more fine-grained features associated with different ransomware signatures. These entropy features are used further to train and optimize our model using a pre-trained network (e.g. VGG-16) in a meta-learning fashion. This approach generates more accurate weight factors, compared to feature images are used, to avoid the bias typically associated with a model trained with a limited number of training samples. Our experimental results show that our proposed model is highly effective in providing a weighted F1-score exceeding the rate>86% compared
Association between cardiovascular diseases and mobility in persons with lower limb amputation: a systematic review
Creators: name: Kaptein, Sara
name: Geertzen, Jan H.B.
name: Dijkstra, Pieter U.
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Medicine
subject: Cell Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Purpose: Persons requiring a lower limb amputation often have cardiovascular diseases that reduce cardiac function, which may complicate recovery and rehabilitation after an amputation. This systematic review analysis the association between cardiovascular diseases and mobility in persons with a lower limb amputation. Method: Four databases were searched for studies published before August 2016 using database-specific keywords and synonyms for amputation, cardiovascular diseases and mobility. Assessment of the publications was performed based on predefined criteria; first title and abstract and thereafter the full text. Results: Of the 1704 titles and abstracts, 51 full texts were assessed. Ten studies were included. Cardiovascular diseases were associated with cardiac complications during rehabilitation. Prosthetic training improved cardiac function. Seven studies showed that cardiovascular diseases were associated with a smaller chance of becoming a prosthetic walker, and with poorer mobility outcomes. Conclusion: Evidence for effects of cardiovascular diseases on mobility in persons with a lower limb amputation is heterogeneous. Cardiovascular diseases reduce the chance of becoming a prosthetic walker and reduce mobility outcomes after a lower limb amputation. More research with adequate quality about cardiovascular diseases in persons requiring a lower limb amputation is needed, to enable informed choices in the pre- and post-amputation rehabilitation. Implications for rehabilitationData about the effect of cardiovascular diseases on mobility in persons with a lower limb amputation is limited.More research about cardiovascular diseases in persons requiring a lower limb amputation is needed, to enable informed choices in the pre- and post-amputation rehabilitation. Data about the effect of cardiovascular diseases on mobility in persons with a lower limb amputation is limited. More research about cardiovascular diseases in persons requiring a lower limb amputation is needed, to enable informed choices in the pre- and post-amputation rehabilitation.
Utilizing Gaussian mixture models in all-sky searches for short-duration gravitational wave bursts
Creators: name: Lopez, Dixeena
name: Gayathri, V.
name: Pai, Archana
name: Heng, Ik Siong
name: Messenger, Chris
name: Gupta, Sagar Kumar
Publisher: name: arXiv
Year: 2021
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: Coherent WaveBurst is a generic, multidetector gravitational wave burst search based on the excess power approach. The coherent WaveBurst algorithm currently employed in the all-sky short-duration gravitational wave burst search uses a conditional approach on selected attributes in the multidimensional event attribute space to distinguish between noisy events from that of astrophysical origin. We have been developing a supervised machine learning approach based on the Gaussian mixture modeling to model the attribute space for signals as well as noise events to enhance the probability of burst detection [Gayathri et al.Phys. Rev. D 102, 104023 (2020)]. We further extend the GMM approach to the all-sky short-duration coherent WaveBurst search as a postprocessing step on events from the first half of the third observing run (O3a). We show an improvement in sensitivity to generic gravitational wave burst signal morphologies as well as the astrophysical source such as core-collapse supernova models due to the application of our Gaussian mixture model approach to coherent WaveBurst triggers. The Gaussian mixture model method recovers the gravitational wave signals from massive compact binary coalescences identified by coherent WaveBurst targeted for binary black holes in GWTC-2, with better significance than the all-sky coherent WaveBurst search. No additional significant gravitational wave bursts are observed.