cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 4 of The effect of apple cider vinegar on lipid profiles and glycemic parameters: a systematic review and meta-analysis of randomized clinical trials
Creators: name: Hadi, Amir
name: Pourmasoumi, Makan
name: Najafgholizadeh, Ameneh
name: Clark, Cain C. T.
name: Esmaillzadeh, Ahmad
Publisher: name: figshare
Year: 2021
Subjects: Biochemistry
Medicine
Science Policy

description: Additional file 4: Supplemental Table 2. Meta-regression of the association between the change in outcomes of interest response to ACV intake and potential moderator.
Why Cognitive Science is Needed for a Viable Theoretical Framework for Cultural Evolution
Creators: name: Gabora, Liane
Publisher: name: arXiv
Year: 2018
Subjects: subject: Populations and Evolution (q-bio.PE)
subject: Neurons and Cognition (q-bio.NC)
subject: FOS: Biological sciences

description: Although Darwinian models are rampant in the social sciences, social scientists do not face the problem that motivated Darwin's theory of natural selection: the problem of explaining how lineages evolve despite that any traits they acquire are regularly discarded at the end of the lifetime of the individuals that acquired them. While the rationale for framing culture as an evolutionary process is correct, it does not follow that culture is a Darwinian or selectionist process, or that population genetics provides viable starting points for modeling cultural change. This paper lays out step-by-step arguments as to why a selectionist approach to cultural evolution is inappropriate, focusing on the lack of randomness, and lack of a self-assembly code. It summarizes an alternative evolutionary approach to culture: self-other reorganization via context-driven actualization of potential.
description: 7 pages (10 point font); 1 table;
Auditory Cues and Feedback in the Serial Reaction Time Task: Evidence for Sequence Acquisition and Sensory Transfer
Creators: name: Broeckelmann, Elena M.
name: Martin, Toby
name: Glazebrook, Cheryl M.
Publisher: name: Taylor & Francis
Year: 2025
Subjects: Medicine
Neuroscience
Biological Sciences not elsewhere classified
Science Policy
Mental Health

description: The present experiment used the Serial Reaction Time Task(SRTT) to investigate if auditory cueing or feedback in the form of spatially compatible tones benefited sequence learning similarly. Fifty-three neurotypical adults (18-35 years; 32 cis-females; 21 cis-males) were randomly assigned to three groups in which they practiced a visual SRTT: Group AC was supplemented with auditory cues; group AF received auditory feedback; group NS performed without sound. Retention and transfer tests (i.e., in the other two sensory conditions), and an explicit awareness test were conducted 48 h after practice. Changes in Total Sequence Time (TST), Total Error (TE), and acquired knowledge of the 10-item sequence order quantified sequence learning and were assessed using a two-way mixed ANOVA with repeated measures (p ≤ 0.05). A significant group-by-time interaction indicated only the AC group maintained their performance improvements when the sequence was perturbed. Overall, improvements in TST on day 1 and day 2 were consistent with all groups acquiring task-general and sequence-specific knowledge. TE outcomes suggested no speed-accuracy tradeoff. On Day 2, all groups performed best in the no-sound condition, indicating performance was maintained when sound cues or feedback were removed. All groups acquired equivalent implicit motor sequence knowledge regardless of sound condition.
Additional file 8 of Frequent gain- and loss-of-function mutations of the BjMYB113 gene accounted for leaf color variation in Brassica juncea
Creators: name: An, Guanghui
name: Chen, Jiongjiong
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 8: Method S1. Anthocyanin metabolite profiling.
Band structure effects on the interaction of charged particles with solids
Creators: name: Pitarke, J. M.
name: Campillo, I.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: A survey is presented of current investigations of the impact of band structure effects on various aspects of the interaction of charged particles with real solids. The role that interband transitions play in the decay mechanism of bulk plasmons is addressed, and results for plasmon linewidths in Al and Si are discussed. {\it Ab initio} calculations of the electronic energy loss of ions moving in Al and Si are also presented, within linear response theory, from a realistic description of the one-electron band structure and a full treatment of the dynamic electronic response of valence electrons. Both random and position-dependent stopping powers of valence electrons are computed.
description: 10 pages, 13 figures, to appear in Nucl. Instrum. Methods B
Additional file 1 of Fuzheng Kang-Ai decoction enhances the effect of Gefitinib-induced cell apoptosis in lung cancer through mitochondrial pathway
Creators: name: Wang, Sumei
name: Peng, Zhiwei
name: Li, Wenjuan
name: Long, Shunqin
name: Xiao, Shujing
name: Wu, Wanyin
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Additional file 1: Table S1. Sequences of all primers (qRT-PCR) and siRNAs. Figure S1. HPLC chromatograms in different drinks of FZKA decoction have similar patterns. Figure S2. STAT3 was inhibited both at protein and mRNA levels by treating with siSTAT3 in PC9 cells. Figure S3. Flow cytometry analysis of cell apoptosis data showing the gating strategy.
Bleakeleya notata Round 1990
Creators: name: Joh, Gyeongje
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Chromista
Ochrophyta
Bacillariophyceae
Fragilariales
Fragilariaceae
Bleakeleya
Bleakeleya notata

description: 28. Bleakeleya notata (Grunow) Round (Fig. 65)
 Basionym: Asterionella bleakeleyi var. notata Grunow.
 References: Hustedt 1931 –1959, p. 254, fig. 733; Lobban et al. 2011, p. 178, figs 2, 6, 7, 14–20; Suzuki et al. 2013, p. 1, figs 1–28.
 Type locality: Honduras: Lindig.
 Morphometrics: Valves 69 (30–125) μm long, 7 (10–12) μm wide, transapical striae (36–38) in 10 μm.
 Remarks: This taxon occurred as planktons or periphytic in in Cuba (Foged 1984) (as Asterionella japonica Cleve), in Palawan of Philippines (Podzorski & Håkansson 1987), in Okinawa (Nagumo & Mayama 2000) and in coasts of Japan (Suzuki & Nagumo 2004, Suzuki et al. 2013), in Yangtze River estuary (He et al. 2007), in Guam (Lobban et al. 2011), and in Chuuk Lagoon of Micronesia (Park et al. 2018). It is distributed globally in tropical marine waters as a typical form to warmer oceans (Lobban et al. 2011). This species was found rarely in rock pools along the Seogwipo coast in Jeju Island, and is newly reported to South Korea.
description: Published as part of Joh, Gyeongje, 2021, Distribution and frequent occurrence of diatom taxa (Bacillariophyta) inhabiting warmer oceans in Seogwipo coast of Jeju Island, southernmost Korea, pp. 1-67 in Phytotaxa 517 (1) on page 21, DOI: 10.11646/phytotaxa.517.1.1, http://zenodo.org/record/8061058
Additional file 3: of Liver DNA methylation of FADS2 associates with FADS2 genotypex
Creators: name: Walle, Paula
name: Männistö, Ville
name: Mello, Vanessa
name: Vaittinen, Maija
name: Perfilyev, Alexander
name: Hanhineva, Kati
name: Ling, Charlotte
name: Pihlajamäki, Jussi
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Characteristics of the groups based on FADS2 genotype. (DOCX 24 kb)
Additional file 3 of The effect of apple cider vinegar on lipid profiles and glycemic parameters: a systematic review and meta-analysis of randomized clinical trials
Creators: name: Hadi, Amir
name: Pourmasoumi, Makan
name: Najafgholizadeh, Ameneh
name: Clark, Cain C. T.
name: Esmaillzadeh, Ahmad
Publisher: name: figshare
Year: 2021
Subjects: Biochemistry
Medicine
Science Policy

description: Additional file 3: Supplemental Table 1. The search strategy used for each database.
Heavy-light mesons spectra in a contact interaction
Creators: name: Bedolla, M. A.
name: Santopinto, E.
name: Gutiérrez-Guerrero, L. X.
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We present the spectrum and decay constants of heavy-light mesons in four different channels: pseudo-scalar, vector, scalar and axial vector. We extend the framework for our previous analysis in a unified symmetry-preserving Schwinger-Dyson equations treatment of a vector$\times$vectord contact interaction. Despite the simplicity of our model, the results found for the meson masses are in good agreement experimental data and earlier model calculations based upon Schwinger-Dyson and Bethe-Salpeter equations (BSEs) involving sophisticated interaction kernels.
Hyalosynedra lanceolata Belando, Jimenez & Aboal
Creators: name: Joh, Gyeongje
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Chromista
Ochrophyta
Bacillariophyceae
Fragilariales
Fragilariaceae
Hyalosynedra
Hyalosynedra lanceolata

description: 29. Hyalosynedra lanceolata Belando, Jiménez & Aboal (Figs 69–72, 187, 198, 199)
 Type locality: Mar Menor Lagoon, El Ciervo Island, SE Spain.
 Reference: Belando et al. 2018, p. 3, figs 1–25.
 Morphometrics: Valves 65–217 (21–266) μm long, and 3–5 (1–4) μm wide, transapical striae unresolved in LM, 52 (47–52) n 10 μm in SEM.
 Remarks: Hyalosynedra lanceolata is closely similar in valve morphology to Hyalosynedra laevigata (Grunow) Williams, but differs from in two features above all others, biseriate striae, and narrow valve width (2.8–4.5 vs 5–7 μm). Sabir et al. (2018) noted that the striae of H. laevigata are biseriate, but it is assumed that the striae appear to be paired due to closing bars across the areolae or missing of closing layer on the areolae. This taxon was reported from type locality, Mar Menor Lagoon in the Mediterranean, yet not in the other places. It is so morphologically close to H. laevigata that their habitats or distribution are expected to be same each other, in the Mediterranean and some warmer oceans such as Florida and the Caribbean Sea, like H. laevigata. It is probably distributed from tropical to subtropical coasts. This taxon is encountered frequently as an epiphyte in the lagoon and pseudo-lagoons along the Seogwipo coast, representing a new record to South Korea.
description: Published as part of Joh, Gyeongje, 2021, Distribution and frequent occurrence of diatom taxa (Bacillariophyta) inhabiting warmer oceans in Seogwipo coast of Jeju Island, southernmost Korea, pp. 1-67 in Phytotaxa 517 (1) on pages 21-24, DOI: 10.11646/phytotaxa.517.1.1, http://zenodo.org/record/8061058
Additional file 2 of The effect of apple cider vinegar on lipid profiles and glycemic parameters: a systematic review and meta-analysis of randomized clinical trials
Creators: name: Hadi, Amir
name: Pourmasoumi, Makan
name: Najafgholizadeh, Ameneh
name: Clark, Cain C. T.
name: Esmaillzadeh, Ahmad
Publisher: name: figshare
Year: 2021
Subjects: Biochemistry
Medicine
Science Policy

description: Additional file 2: Supplemental Figure 2. Funnel plot illustrating publication bias in the studies reporting effect of apple cider vinegar intake on the lipid profiles and glycemic related markers. Abbreviations: TG: Triacylglycerol; TC: Total-Cholesterol; LDL-C: Low-density Lipoprotein Cholesterol; HDL-C: High-density Lipoprotein Cholesterol; FBS: Fasting Blood Glucose; HOMA-IR: Homeostatic Model Assessment of Insulin Resistance.
Chiral Symmetry for Positive and Negative Parity Nucleons
Creators: name: Jido, D.
name: Nemoto, Y.
name: Oka, M.
name: Hosaka, A.
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Chiral properties of positive and negative parity nucleons, N and N*$, are studied from the viewpoint of chiral symmetry. Two possible ways to assign chiral transformations to the negative parity nucleon are considered. Using linear sigma models based on the two chiral realizations, theoretical as well as phenomenological consequences of the two different assignments are investigated. We find that the nucleon mass in the chiral restored phase is the key quantity to determine the meson-nucleon couplings and the axial charges of nucleons. We also discuss the role of chiral symmetry breaking in the mass splitting of N and N* in the two sigma models.
description: 6 pages including 1 figure, LaTeX, use epsf.sty
Reframing Convergent and Divergent Thought for the 21st Century
Creators: name: Gabora, Liane
Publisher: name: arXiv
Year: 2018
Subjects: subject: Neurons and Cognition (q-bio.NC)
subject: Quantum Physics (quant-ph)
subject: FOS: Biological sciences
subject: FOS: Physical sciences

description: Convergent thought is defined and measured in terms of the ability to perform on tasks where there is a single correct solution, and divergent thought is defined and measured in terms of the ability to generate multiple different solutions. However, this characterization of them presents inconsistencies, and despite that they are promoted as key constructs of creativity, they do not capture the capacity to reiteratively modify an idea in light of new perspectives arising out of an overarching conceptual framework. Research on formal models of concepts and their interactions suggests that different creative outputs may be projections of the same underlying idea at different phases of this kind of 'honing' process. This leads us to redefine convergent thought as thought in which the relevant concepts are considered from conventional contexts, and divergent thought as thought in which they are considered from unconventional contexts. Implications for the assessment of creativity are discussed.
description: 7 pages; 2 figures;
Evaporative Cooling of a Two-Component Degenerate Fermi Gas
Creators: name: Holland, M. J.
name: DeMarco, B.
name: Jin, D. S.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: We derive a quantum theory of evaporative cooling for a degenerate Fermi gas with two constituents and show that the optimum cooling trajectory is influenced significantly by the quantum statistics of the particles. The cooling efficiency is reduced at low temperatures due to Pauli blocking of available final states in each binary collision event. We compare the theoretical optimum trajectory with experimental data on cooling a quantum degenerate cloud of potassium-40, and show that temperatures as low as 0.3 times the Fermi temperature can now be achieved.
description: 6 pages, 4 figures
Additional file 1 of The effect of apple cider vinegar on lipid profiles and glycemic parameters: a systematic review and meta-analysis of randomized clinical trials
Creators: name: Hadi, Amir
name: Pourmasoumi, Makan
name: Najafgholizadeh, Ameneh
name: Clark, Cain C. T.
name: Esmaillzadeh, Ahmad
Publisher: name: figshare
Year: 2021
Subjects: Biochemistry
Medicine
Science Policy

description: Additional file 1: Supplemental Figure 1. Sensitivity analysis. Abbreviations: TG: Triacylglycerol; TC: Total-Cholesterol; LDL-C: Low-density Lipoprotein Cholesterol; HDL-C: High-density Lipoprotein Cholesterol; FBS: Fasting Blood Glucose.
Additional file 1: of The potential of visible blue light (405â nm) as a novel decontamination strategy for carbapenemase-producing enterobacteriaceae (CPE)
Creators: name: Halstead, Fenella
name: Ahmed, Zahra
name: Bishop, Jonathan
name: Oppenheim, Beryl
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Table S1: Showing the VNTR profiles and MLST types (where available) for the Klebsiella pneumoniae and K. oxytoca isolates used in the study. Table S2: Showing the MLST types (where available) for the Escherichia coli isolates used in the study. (DOCX 17 kb)
Lyrella concilians D. G. Mann
Creators: name: Joh, Gyeongje
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Chromista
Ochrophyta
Bacillariophyceae
Naviculales
Naviculaceae
Lyrella
Lyrella concilians

description: 30. Lyrella concilians (Cleve) D.G. Mann (Fig. 120)
 Basionym: Navicula concilians Cleve.
 Synonym: Navicula bialbata H. Peragallo & M. Peragallo.
 Type locality: Honolulu, USA.
 References: Peragallo and Peragallo 1897–1908, p. 144, pl. 28, fig. 1; Hustedt 1961–1966, p. 519, fig. 1559.
 Morphometrics: Valves 62 (45–77) μm long, 27 (21–26) μm wide, transapical striae 11 (11–14) in 10 μm, and puncta in a stria 13 (13–16) in 10 μm.
 Remarks: Lyrella concilians is distributed in the western Pacific Ocean: Honolulu, Samoa, and China (Hustedt 1961–1966). This taxon was reported from Villefranche of the Mediterranean (Peragallo & Peragallo 1897–1908), and rarely from the other areas except the type locality. It was found twice in salt marshes of the Seogwipo coast in Jeju Island, representing a new record for South Korea.
description: Published as part of Joh, Gyeongje, 2021, Distribution and frequent occurrence of diatom taxa (Bacillariophyta) inhabiting warmer oceans in Seogwipo coast of Jeju Island, southernmost Korea, pp. 1-67 in Phytotaxa 517 (1) on page 24, DOI: 10.11646/phytotaxa.517.1.1, http://zenodo.org/record/8061058
Additional file 2 of microRNA-1271 impedes the development of prostate cancer by downregulating PES1 and upregulating ERβ
Creators: name: Jiang, Zhenming
name: Zhang, Yuxi
name: Chen, Xi
name: Wang, Yan
name: Wu, Pingeng
name: Wu, Chengzhang
name: Chen, Dong
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: Additional file 2. Original images of Western blot.
R-parity Violation and Light Neutralinos at CODEX-b, FASER, and MATHUSLA
Creators: name: Dercks, Daniel
name: de Vries, Jordy
name: Dreiner, Herbi K.
name: Wang, Zeren Simon
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The $LQ\bar D$ operator in R-parity-violating supersymmetry can lead to meson decays to light neutralinos and neutralino decays to lighter mesons, with a long lifetime. Since the high-luminosity LHC is expected to accumulate as much as 3/ab of data, several detectors proposed to be built at the LHC may probe unexplored regions in the parameter space, for long-lived neutralinos. We estimate the sensitivity of the recently proposed detectors, CODEX-b, FASER, and MATHUSLA, for detecting such light neutralinos singly produced from $D$- and $B$-meson decays in a list of benchmark scenarios, and discuss the advantages and disadvantages of the proposed detectors in this context. We also present our results in a model independent fashion, which can be applied to any long-lived particle with mass in the GeV regime.
description: 15 pages, 10 figures, 6 tables; v2, accepted version
Additional file 1 of Decision aids linked to evidence summaries and clinical practice guidelines: results from user-testing in clinical encounters
Creators: name: Heen, Anja Fog
name: Vandvik, Per Olav
name: Brandt, Linn
name: Achille, Frankie
name: Guyatt, Gordon Henry
name: Akl, Elie A.
name: Treewek, Shaun
name: Agoritsas, Thomas
Publisher: name: figshare
Year: 2021
Subjects: subject: Information Systems
subject: FOS: Computer and information sciences

description: Additional file 1. Standards for Reporting Qualitative Research checklist.
Additional file 1 of Involvement of catalase and superoxide dismutase in hydrophobic organic solvent tolerance of Escherichia coli
Creators: name: Doukyu, Noriyuki
name: Taguchi, Katsuya
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Figure S1. Effects of H2O2 and menadione on the cell viability of E. coli BW25113 and its mutants deficient in ROS-scavenging enzymes. Each strain was exposed to H2O2 (A) and menadione (B). After incubation with H2O2 and menadione for 1 h, viable cells were measured by examining the formation of colonies on LB agar medium. The survival fraction was calculated as the number of colonies treated with H2O2 or menadione divided by that of untreated cells. Symbols: filled circles, BW25113; open squares, BW25113∆katE∆katG; open triangles, BW25113∆sodA∆sodB. Values indicate the means and standard deviations of the results from three independent experiments.
Additional file 4 of Evaluation of carbapenem-resistant Enterobacteriaceae (CRE) guideline implementation in the Veterans Affairs Medical Centers using the consolidated framework for implementation research
Creators: name: Goedken, Cassie Cunningham
name: Guihan, Marylou
name: Brown, Charnetta R.
name: Ramanathan, Swetha
name: Vivo, Amanda
name: Suda, Katie J.
name: Fitzpatrick, Margaret A.
name: Poggensee, Linda
name: Perencevich, Eli N.
name: Rubin, Michael
name: Reisinger, Heather Schacht
name: Evans, Martin
name: Evans, Charlesnika T.
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 4. MPC Interview Case Memos: Support and Enhancement of VA Guidelines to Prevent the Spread of Carbapenemresistant Enterobacteriaceae (CRE) Qualitative Interview results.
Additional file 2: of The potential of visible blue light (405â nm) as a novel decontamination strategy for carbapenemase-producing enterobacteriaceae (CPE)
Creators: name: Halstead, Fenella
name: Ahmed, Zahra
name: Bishop, Jonathan
name: Oppenheim, Beryl
Publisher: name: figshare
Year: 2019
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine

description: Figure S1: Core phylogeny tree showing the relatedness of the seven Klebsiella pneumoniae isolates that were included in the study. (PDF 278 kb)
Measures of critical exponents in the four dimensional site percolation
Creators: name: Ballesteros, H. G.
name: Fernandez, L. A.
name: Martin-Mayor, V.
name: Sudupe, A. Munoz
name: Parisi, G.
name: Ruiz-Lorenzo, J. J.
Publisher: name: arXiv
Year: 1996
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Using finite-size scaling methods we measure the thermal and magnetic exponents of the site percolation in four dimensions, obtaining a value for the anomalous dimension very different from the results found in the literature. We also obtain the leading corrections-to-scaling exponent and, with great accuracy, the critical density.
description: 13 pages, 2 postscript figures
Additional file 3 of Evaluation of carbapenem-resistant Enterobacteriaceae (CRE) guideline implementation in the Veterans Affairs Medical Centers using the consolidated framework for implementation research
Creators: name: Goedken, Cassie Cunningham
name: Guihan, Marylou
name: Brown, Charnetta R.
name: Ramanathan, Swetha
name: Vivo, Amanda
name: Suda, Katie J.
name: Fitzpatrick, Margaret A.
name: Poggensee, Linda
name: Perencevich, Eli N.
name: Rubin, Michael
name: Reisinger, Heather Schacht
name: Evans, Martin
name: Evans, Charlesnika T.
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 3. CFIR Constructs and Construct Definitions.
Asynchronous Distributed Optimization over Lossy Networks via Relaxed ADMM: Stability and Linear Convergence
Creators: name: Bastianello, Nicola
name: Carli, Ruggero
name: Schenato, Luca
name: Todescato, Marco
Publisher: name: arXiv
Year: 2019
Subjects: subject: Optimization and Control (math.OC)
subject: FOS: Mathematics

description: In this work we focus on the problem of minimizing the sum of convex cost functions in a distributed fashion over a peer-to-peer network. In particular, we are interested in the case in which communications between nodes are prone to failures and the agents are not synchronized among themselves. We address the problem proposing a modified version of the relaxed ADMM, which corresponds to the Peaceman-Rachford splitting method applied to the dual. By exploiting results from operator theory, we are able to prove the almost sure convergence of the proposed algorithm under general assumptions on the distribution of communication loss and node activation events. By further assuming the cost functions to be strongly convex, we prove the linear convergence of the algorithm in mean to a neighborhood of the optimal solution, and provide an upper bound to the convergence rate. Finally, we present numerical results testing the proposed method in different scenarios.
description: To appear in IEEE Transactions on Automatic Control
Additional file 1: of Liver DNA methylation of FADS2 associates with FADS2 genotypex
Creators: name: Walle, Paula
name: Männistö, Ville
name: Mello, Vanessa
name: Vaittinen, Maija
name: Perfilyev, Alexander
name: Hanhineva, Kati
name: Ling, Charlotte
name: Pihlajamäki, Jussi
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: 60506 Virology

description: Association between estimated delta-5 desaturase activity in serum and liver and DNA methylation of CpG sites in FADS1. (DOCX 26 kb)
Additional file 2: of Liver DNA methylation of FADS2 associates with FADS2 genotypex
Creators: name: Walle, Paula
name: Männistö, Ville
name: Mello, Vanessa
name: Vaittinen, Maija
name: Perfilyev, Alexander
name: Hanhineva, Kati
name: Ling, Charlotte
name: Pihlajamäki, Jussi
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics

description: DNA methylation levels in CpG-sites annotated to FADS2 in groups based on FADS2 variant rs174616. (DOCX 27 kb)
Additional file 2 of Evaluation of carbapenem-resistant Enterobacteriaceae (CRE) guideline implementation in the Veterans Affairs Medical Centers using the consolidated framework for implementation research
Creators: name: Goedken, Cassie Cunningham
name: Guihan, Marylou
name: Brown, Charnetta R.
name: Ramanathan, Swetha
name: Vivo, Amanda
name: Suda, Katie J.
name: Fitzpatrick, Margaret A.
name: Poggensee, Linda
name: Perencevich, Eli N.
name: Rubin, Michael
name: Reisinger, Heather Schacht
name: Evans, Martin
name: Evans, Charlesnika T.
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 2. Standards for Reporting Qualitative Research (SRQR).
Strong CP and Mu Problems in Theories with Gauge Mediated Supersymmetry Breaking
Creators: name: Chun, Eung Jin
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We provide a simple solution to the $μ$ and strong CP problems in the context of gauge mediated supersymmetry breaking. The generic appearance of R symmetry in dynamical supersymmetry breaking is used to implement Peccei-Quinn symmetry. Acceptable $μ$ and $B$ terms as well as the large symmetry breaking scale are induced in the presence of nonrenormalizable interactions. Cosmological consequences of this scheme turn out to yield constraints on the PQ symmetry breaking scale and the number of the messenger/heavy quarks. Complexity in introducing non-R Peccei-Quinn symmetry is contrasted with the case of R symmetry.
description: 10 pages, Revtex. Significantly modified version to apear in Phys. Rev. D
Planothidium quarnerensis fm. rhombica Witkowski & Riaux-Gobin
Creators: name: Joh, Gyeongje
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Chromista
Ochrophyta
Bacillariophyceae
Achnanthales
Achnanthaceae
Planothidium
Planothidium quarnerensis
Planothidium quarnerensis f. rhombica (giffen) witkowski & riaux-Gobin

description: 33. Planothidium quarnerensis f. rhombica (Giffen) Witkowski & Riaux-Gobin (Figs 89, 90)
 Basionym: Cocconeis quarnerensis f. rhombica Giffen.
 Type locality: Mahé Island, Seychelles.
 Reference: Riaux-Gobin et al. 2018, p. 117, figs 45–48.
 Morphomerics: Valves 13–24 (15–18) μm long, 7–11 (10–11) μm wide, transapical striae 10–11 (8–9) in 10 μm of sternum valve, 11–12 (9) in 10 μm of raphe valve.
 Remarks: The structure of vestigial striae is distinct in the axial area of sternum valve. Local specimens are slightly longer, but narrower in width, compared with the type ones. This taxon was reported only from the type locality, Mahé Island of the Seychelles, and probably tropical taxon in warmer coasts. It was rare epiphytes on seaweeds along the Seogwipo coast in Jeju Island, and this is a new report to South Korea.
description: Published as part of Joh, Gyeongje, 2021, Distribution and frequent occurrence of diatom taxa (Bacillariophyta) inhabiting warmer oceans in Seogwipo coast of Jeju Island, southernmost Korea, pp. 1-67 in Phytotaxa 517 (1) on page 25, DOI: 10.11646/phytotaxa.517.1.1, http://zenodo.org/record/8061058
Replica-nondiagonal solutions in the SYK model
Creators: name: Aref'eva, Irina
name: Khramtsov, Mikhail
name: Tikhanovskaya, Maria
name: Volovich, Igor
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We study the SYK model in the large $N$ limit beyond the replica-diagonal approximation. First we show that there are exact replica-nondiagonal solutions of the saddle point equations for $q=2$ for any finite replica number $M$. In the interacting $q=4$ case we are able to construct the numerical solutions, which are in one-to-one correspondence to the analytic solutions of the quadratic model. These solutions are singular in the $M \to 0$ limit in both quadratic and quartic interaction cases. The calculations of the on-shell action at finite integer $M$ show that the nondiagonal replica-symmetric saddles are subleading in both quadratic and quartic cases. We also study replica-nondiagonal solutions of the SYK in the strong coupling limit. For arbitrary $q$ we show that besides the usual solutions of the replica-diagonal saddle point equations in the conformal limit, there are also replica-nondiagonal solutions for any value of $M$ (including zero). The specific configurations that we study, have factorized time and replica dependencies. The corresponding saddle point equations are separable at strong coupling, and can be solved using the Parisi ansatz from spin glass theory. We construct the solutions which correspond to the replica-symmetric case and to one-step replica symmetry breaking. We compute the regularized free energy on these solutions in the limit of zero replicas. It is observed that there are nondiagonal solutions with the regularized free energy lower than that of the standard diagonal conformal solution.
description: 66 pages, 44 figures. v4: Expanded and improved discussion on several points, plot 4A replaced. Version to be published in JHEP
Additional file 1: of Feasibility of smart wristbands for continuous monitoring during pregnancy and one month after birth
Creators: name: Grym, Kirsi
name: Niela-VilĂŠn, Hannakaisa
name: Ekholm, Eeva
name: Hamari, Lotta
name: Azimi, Iman
name: Rahmani, Amir
name: Liljeberg, Pasi
name: LĂśyttyniemi, Eliisa
name: Axelin, Anna
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Medicine
subject: Molecular Biology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Science Policy

description: Questions used in the phone interviews. This file provides the multiple-choice and open-ended questions used in the phone interviews. (DOCX 13 kb)
title: FREE SPEECH ONLINE: Regulating the internet without impeding free speech
Creators: name: Fairweather, Louis Stuart Eastwood
Publisher: name: University of Glasgow
Year: 2024

description: This thesis considers the free speech implications of applying a harms-based approach to internet regulation. The Online Safety Act 2023, which was enacted in the United Kingdom in October 2023, aims to regulate content and activity online based on its capacity to cause harm. In doing so, it imposes new duties on providers of online services and grants OFCOM new powers to hold these providers accountable for any failure to carry out their duties under the Act. Similarly, proposals have been put forward by the Law Commission of England and Wales to reform the current criminal law concerning communications sent over public electronic communications networks (section 127(1) of the Communications Act 2003), and to replace this with a harms-based offence. This thesis seeks to identify which type of speech (if any) causes harm and will examine the extent to which legislation that targets speech based on its capacity to cause harm risks impeding our right to free speech.
Additional file 1 of Evaluation of carbapenem-resistant Enterobacteriaceae (CRE) guideline implementation in the Veterans Affairs Medical Centers using the consolidated framework for implementation research
Creators: name: Goedken, Cassie Cunningham
name: Guihan, Marylou
name: Brown, Charnetta R.
name: Ramanathan, Swetha
name: Vivo, Amanda
name: Suda, Katie J.
name: Fitzpatrick, Margaret A.
name: Poggensee, Linda
name: Perencevich, Eli N.
name: Rubin, Michael
name: Reisinger, Heather Schacht
name: Evans, Martin
name: Evans, Charlesnika T.
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 1. MPC/Infection Control Interview Questions on CRE Guidelines.
The Nonexistence of Vortices for Rotating Bose-Einstein Condensates with Attractive Interactions
Creators: name: Guo, Yujin
name: Luo, Yong
name: Yang, Wen
Publisher: name: arXiv
Year: 2019
Subjects: subject: Analysis of PDEs (math.AP)
subject: Mathematical Physics (math-ph)
subject: Functional Analysis (math.FA)
subject: FOS: Mathematics
subject: FOS: Physical sciences

description: This article is devoted to studying the model of two-dimensional attractive Bose-Einstein condensates in a trap $V(x)$ rotating at the velocity $Ω$. This model can be described by the complex-valued Gross-Pitaevskii energy functional. It is shown that there exists a critical rotational velocity $00$ denotes the absolute product for the number of particles times the scattering length, and $w>0$ is the unique positive solution of $Δw-w+w^3=0$ in $\mathbb{R}^2$. If $V(x)=|x|^2$ and $ 0
description: 41 pages, the current file is an updated version of arXiv:1901.09619 and the title is changed. This paper is accepted by Archive for Rational Mechanics and Analysis
Dynamics of fermions coupling to a U(1) gauge field in the limit $e^2\to\infty$
Creators: name: Ng, Tai-Kai
Publisher: name: arXiv
Year: 2000
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We study in this paper the properties of a gas of fermions coupling to a U(1) gauge field at wavevectors $q
description: 25 pages
Additional file 1 of Two genomic regions of a sodium azide induced rice mutant confer broad-spectrum and durable resistance to blast disease
Creators: name: Lo, Kuan-Lin
name: Chen, Yi-Nian
name: Chiang, Min-Yu
name: Chen, Mei-Chun
name: Panibe, Jerome P.
name: Chiu, Chung-Chun
name: Liu, Lu-Wei
name: Chen, Liang-Jwu
name: Chen, Chun-Wei
name: Li, Wen-Hsiung
name: Wang, Chang-Sheng
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Table S1. Response of 22 rice varieties/lines to 187 blast isolates challenge (2019)
Additional file 1 of The Danish sports chiropractic landscape: an exploration of practice characteristics and salient developmental issues
Creators: name: Myburgh, Corrie
name: Andersen, Julie
name: Bakkely, Nicklas
name: Hermannsen, Jakob
name: Zuschlag, Marcus
name: Damgaard, Philip
name: Boyle, Eleanor
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Additional file 1.
Learning Counterfactual Representations for Estimating Individual Dose-Response Curves
Creators: name: Schwab, Patrick
name: Linhardt, Lorenz
name: Bauer, Stefan
name: Buhmann, Joachim M.
name: Karlen, Walter
Publisher: name: arXiv
Year: 2019
Subjects: subject: Machine Learning (cs.LG)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: Estimating what would be an individual's potential response to varying levels of exposure to a treatment is of high practical relevance for several important fields, such as healthcare, economics and public policy. However, existing methods for learning to estimate counterfactual outcomes from observational data are either focused on estimating average dose-response curves, or limited to settings with only two treatments that do not have an associated dosage parameter. Here, we present a novel machine-learning approach towards learning counterfactual representations for estimating individual dose-response curves for any number of treatments with continuous dosage parameters with neural networks. Building on the established potential outcomes framework, we introduce performance metrics, model selection criteria, model architectures, and open benchmarks for estimating individual dose-response curves. Our experiments show that the methods developed in this work set a new state-of-the-art in estimating individual dose-response.
description: published at AAAI 2020
New critical behaviour of the three-dimensional Ising model with nearest-neighbor, next-nearest-neighbor and plaquette interactions
Creators: name: Cirillo, E. N. M.
name: Gonnella, G.
name: Pelizzola, A.
Publisher: name: arXiv
Year: 1996
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: The critical and multicritical behavior of the simple cubic Ising model with nearest-neighbor, next-nearest-neighbor and plaquette interactions is studied using the cube and star-cube approximations of the cluster variation method and the recently proposed cluster variation--Padé approximant method. Particular attention is paid to the line of critical end points of the ferromagnetic-paramagnetic phase transition: its (multi)critical exponents are calculated, and their values suggest that the transition belongs to a novel universality class. A rough estimate of the crossover exponent is also given.
description: 7 pages REVTeX + 2 PostScript figures, to be published in Phys. Rev. E as a Rapid Communication
Cocconeis convexa Giffen
Creators: name: Joh, Gyeongje
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Chromista
Ochrophyta
Bacillariophyceae
Achnanthales
Cocconeidaceae
Cocconeis
Cocconeis convexa

description: 35. Cocconeis convexa Giffen (Figs 39–41, 193, 194)
 Type locality: Kidd’s Beach, Cape Province, South Africa.
 References: Giffen 1967, p. 257, pl. 60(2), figs 26–28; Witkowski et al. 2000, p. 104, pl. 37, figs 5, 6, pl. 41, figs 1–4; Riaux-Gobin et al. 2011, p. 22, pl. 3, figs 1–5, pl. 32, figs 1–7.
 Morphometrics: Valves 16–26(12–32) μm long, 12–18 (9–20) μm wide, transapical striae of sternum valve unresolved, (32–40) in 10 μm, 30 (24–28) in 10 μm of raphe valve.
 Remarks: Cocconeis convexa is widespread along the coasts of the Indian and Pacific Oceans, South Africa, Shatt al-Arab River, Oman, New Caledonia in Melanesia (Witkowski et al. 2000). This taxon has been reported from the eastern coast of Japan (Suzuki 2001), Patagonia coast of Argentina (Sar et al. 2003), Yap and Guam of the western Pacific Ocean (Navarro & Lobban 2009), and frequently in Réunion and Rodrigues Islands of the western Indian Ocean (Riaux-Gobin et al. 2011), and the coast of Baja California Peninsula, Mexico (Siqueiros-Beltrones & Argumedo-Hernández 2015). In South Korea, it was already reported from the coasts of Jeju Island (Kim et al. 2017), and is frequently found as an epiphyte on seaweeds along the Seogwipo coast in Jeju Island.
description: Published as part of Joh, Gyeongje, 2021, Distribution and frequent occurrence of diatom taxa (Bacillariophyta) inhabiting warmer oceans in Seogwipo coast of Jeju Island, southernmost Korea, pp. 1-67 in Phytotaxa 517 (1) on page 25, DOI: 10.11646/phytotaxa.517.1.1, http://zenodo.org/record/8061058
Figuring Out Gas & Galaxies in Enzo (FOGGIE). I. Resolving Simulated Circumgalactic Absorption at 2 < z < 2.5
Creators: name: Peeples, Molly S.
name: Corlies, Lauren
name: Tumlinson, Jason
name: O'Shea, Brian W.
name: Lehner, Nicolas
name: O'Meara, John M.
name: Howk, J. Christopher
name: Smith, Britton D.
name: Wise, John H.
name: Hummels, Cameron B.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We present simulations from the new "Figuring Out Gas & Galaxies in Enzo" (FOGGIE) project. In contrast to most extant simulations of galaxy formation, which concentrate computational resources on galactic disks and spheroids with fluid and particle elements of fixed mass, the FOGGIE simulations focus on extreme spatial and mass resolution in the circumgalactic medium (CGM) surrounding galaxies. Using the Enzo code and a new refinement scheme, FOGGIE reaches spatial resolutions of 381 comoving $h^{-1}$ pc and resolves extremely low masses ($\lesssim 1$--$100$ Msun out to 100 comoving $h^{-1}$ kpc from the central halo. At these resolutions, cloud and filament-like structures giving rise to simulated absorption are smaller, and better resolved, than the same structures simulated with standard density-dependent refinement. Most of the simulated absorption arises in identifiable and well-resolved structures with masses $\lesssim 10^4$ Msun, well below the mass resolution of typical zoom simulations. However, integrated quantities such as mass surface density and ionic covering fractions change at only the $\lesssim 30$% level as resolution is varied. This relatively small changes in projected quantities---even when the sizes and distribution of absorbing clouds change dramatically---indicate that commonly used observables provide only weak constraints on the physical structure of the underlying gas. Comparing the simulated absorption features to the KODIAQ (Keck Observatory Database of Ionized Absorption toward Quasars) survey of $z \sim2$--$3.5$ Lyman limit systems, we show that high-resolution FOGGIE runs better resolve the internal kinematic structure of detected absorption, and better match the observed distribution of absorber properties. These results indicate that CGM resolution is key in properly testing simulations of galaxy evolution with circumgalactic observations.
description: ApJ, in press. New appendix with results from simulation with 78pc resolution CGM at z=2.5 now included. Appendix C with additional velocity phase diagrams has been omitted to fit within the arXiv space restraints
Additional file 1 of One-step real-time multiplex reverse transcription-polymerase chain reaction assay with melt curve analysis for detection of potato leafroll virus, potato virus S, potato virus X, and potato virus Y
Creators: name: Onozuka, Nobuya
name: Ohki, Takehiro
name: Oka, Norikuni
name: Maoka, Tetsuo
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: Additional file 1. Supplementary Figure 1. The primer binding position in viral genome. The position referred to the representative sequences written in Virus Taxonomy ninth edition: GenBank accession X14600 for PLRV, AJ863509 for PVS, D00344 for PVX, and AJ890348for PVY. Primer binding sequences and their direction were shown under each alignment, and red letters meant the position of mismatches between primer and genome sequences, and degenerated nucleotides were replaced with represented nucleotides. Abbreviations for lineages of PVS; O, PVSO; A, PVSA; P, PVSP, and those for strains of PVY; C, PVYC; NA-N, PVYNA-N; E, PVYE; O5, PVYO5; Eu- N, PVYEu-N; O, PVYO. Supplementary Figure 2. The confirmation of mismatches between viral genome and reported primers. The position referred to the representative sequences written in Virus Taxonomy ninth edition: GenBank accession AJ863509 for PVS and AJ890348 for PVY. Pimers’ binding sequences and their direction were shown under each alignment, and red letters meant the position of mismatches between primer and genome sequences and degenerated nucleotide was replaced with represented nucleotide. Abbreviations for lineages of PVS; O, PVSO; A, PVSA; P, PVSP, and those for strains of PVY; C, PVYC; NA-N, PVYNA-N; E, PVYE; O5, PVYO5; Eu-N, PVYEu- N; O, PVYO.