cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
title: ADCO, Cart. 186 (11 H 71), f. 0239r
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, t. II (XVe siècle), tome II, Archives départementales de la Côte-d'Or, C
art. 186 (11 H 71). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, t. II (XVe siècle), tome II, Archives départementales de la
 Côte-d'Or, Cart. 186 (11 H 71), f. 0239r, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-
project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
On the top of the energy barrier. Margarita Garcia Perez
Creators: name: Gonzalez-Arroyo, Antonio
name: Snippe, Jeroen
name: van Baal, Pierre
Publisher: name: arXiv
Year: 1993
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We present results related to the search of SU(2) instantons on a geometry $[0,L]^3\times [0,T]$ obtained using over-improved cooling with fixed boundary conditions. We also introduce a criterion for finding a sphaleron at the top of the energy barrier of the instanton path.
description: 6p, ps-file (uuencoded), preprint INLO-PUB 14/93, FTUAM-93/39. Contribution to Lattice'93 Conference (Dallas, 1993)
GeV-scale hot sterile neutrino oscillations: a numerical solution
Creators: name: Ghiglieri, J.
name: Laine, M.
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The scenario of baryogenesis through GeV-scale sterile neutrino oscillations is governed by non-linear differential equations for the time evolution of a sterile neutrino density matrix and Standard Model lepton and baryon asymmetries. By employing up-to-date rate coefficients and a non-perturbatively estimated Chern-Simons diffusion rate, we present a numerical solution of this system, incorporating the full momentum and helicity dependences of the density matrix. The density matrix deviates significantly from kinetic equilibrium, with the IR modes equilibrating much faster than the UV modes. For equivalent input parameters, our final results differ moderately (~50%) from recent benchmarks in the literature. The possibility of producing an observable baryon asymmetry is nevertheless confirmed. We illustrate the dependence of the baryon asymmetry on the sterile neutrino mass splitting and on the CP-violating phase measurable in active neutrino oscillation experiments.
description: 26 pages. v2: clarifications and references added
Note Regarding Logistics and Briefing of Presidential meeting with Ambassador Gronouski
Creators: name: United States. Department Of State
Publisher: name: The University of Texas at Austin
Year: 1966
Subjects: Box 200 Folder 7
Box 200 Folder 07
Poland -- Politics and government -- 1945-1980
Poland -- Relations -- United States

description: Note to Rostow from Read preceeding memo on briefing material for Presidential meeting with Ambassador Gronouski.
Additional file 1: of A direct regulatory link between microRNA-137 and SHANK2: implications for neuropsychiatric disorders
Creators: name: Cortabitarte, Ana De Sena
name: Berkel, Simone
name: Flavia-Bianca Cristian
name: Fischer, Christine
name: Rappold, Gudrun
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Plant Biology

description: Figure S1. Images of primary neuronal cultures pre‐ and posttreatment. Figure S2. High conservation of the miR‐137 binding site in the SHANK2‐3’UTR and of miR‐137 between different species. Figure S3. Relative expression levels of miR‐137 in different human tissues. Figure S4. Uncropped Western blot pictures. Table S1. ASD risk genes which are predicted or validated miR‐137 targets. Table S2. Primers used for cloning, mutagenesis, and screening. Primer sequences are all shown in 5′→3′ orientation. Table S3. Origin of total RNA samples used to measure hsa‐miR‐137 relative expression across different tissues (see Additional file 1: Figure S2 for results). Table S4. Experimentally validated miR‐137 targets. Table S5. Gene expression analysis of 69 validated miR‐137 target genes (including SHANK2) in the CommonMind RNA sequencing data. Table S6a. Gene expression analysis of validated targets from five different control microRNAs in the CommonMind RNA sequencing data. Genes labeled in gray withstand correction for multiple testing using the Benjamini-Hochberg method and a FDR of 10%. Table S6b. Comparison of the number of differentially expressed target genes of different microRNAs between SCZ and control individuals in the CommonMind RNASeq data. Table S7. Analysis of the 3′UTR of the differentially expressed miR-137 genes in the DLPFC between SCZ and control individuals for additional putative miR-124 and miR-128 binding sites. (PDF 1417 kb)
Mixed (open/closed) N=(2,2) string theory as an integrable deformation of self-duality
Creators: name: Ketov, Sergei V.
Publisher: name: arXiv
Year: 1996
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The exact effective field equations of motion, corresponding to the perturbative mixed theory of open and closed (2,2) world-sheet supersymmetric strings, are investigated. It is shown that they are only integrable in the case of an abelian gauge group. The gravitational equations are then stationary with respect to the Born-Infeld-type effective action.
description: 9 pages, LaTeX
Note Regarding Logistics and Briefing of Presidential meeting with Ambassador Gronouski (Duplicate)
Creators: name: United States. Department Of State
Publisher: name: The University of Texas at Austin
Year: 1966
Subjects: Box 200 Folder 7
Box 200 Folder 07
Poland -- Politics and government -- 1945-1980
Poland -- Relations -- United States

description: Note to Rostow from Read preceeding memo on briefing material for Presidential meeting with Ambassador Gronouski.
Measurement of the pairwise kinematic Sunyaev-Zeldovich effect with Planck and BOSS data
Creators: name: Li, Yi-Chao
name: Ma, Yin-Zhe
name: Remazeilles, Mathieu
name: Moodley, Kavilan
Publisher: name: arXiv
Year: 2017
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We present a new measurement of the kinetic Sunyaev-Zeldovich effect (kSZ) using Planck cosmic microwave background (CMB) and Baryon Oscillation Spectroscopic Survey (BOSS) data. Using the `LowZ North/South' galaxy catalogue from BOSS DR12, and the group catalogue from BOSS DR13, we evaluate the mean pairwise kSZ temperature associated with BOSS galaxies. We construct a `Central Galaxies Catalogue' (CGC) which consists of isolated galaxies from the original BOSS data set, and apply the aperture photometry (AP) filter to suppress the primary CMB contribution. By constructing a halo model to fit the pairwise kSZ function, we constrain the mean optical depth to be $\barτ=(0.53\pm0.32)\times10^{-4}(1.65\,σ)$ for `LowZ North CGC', $\barτ=(0.30\pm0.57)\times10^{-4}(0.53\,σ)$ for `LowZ South CGC', and $\barτ=(0.43\pm0.28)\times10^{-4}(1.53\,σ)$ for `DR13 Group'. In addition, we vary the radius of the AP filter and find that the AP size of $7\,{\rm arcmin}$ gives the maximum detection for $\barτ$. We also investigate the dependence of the signal with halo mass and find $\barτ=(0.32\pm0.36)\times10^{-4}(0.8\,σ)$ and $\barτ=(0.67\pm0.46)\times10^{-4}(1.4\,σ)$ for `DR13 Group' with halo mass restricted to, respectively, less and greater than its median halo mass, $10^{12}\, h^{-1}{\rm M}_{\odot}$. For the `LowZ North CGC' sample restricted to $M_{\rm h} \gtrsim 10^{14}\, h^{-1}{\rm M}_\odot$ there is no detection of the kSZ signal because these high mass halos are associated with the high-redshift galaxies of the LowZ North catalogue, which have limited contribution to the pairwise kSZ signals.
description: 11 pages, 11 figures, 2 tables
Methods for including environmental impacts in health economic evaluations and health technology assessments: a scoping review
Creators: name: Williams, Jake
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Health Economics
subject: Public Health
subject: Economics
subject: Health Services Research
subject: Medicine and Health Sciences
subject: Social and Behavioral Sciences
subject: economic evaluation
subject: environmental impact
subject: health economics
subject: health technology assessment
subject: scoping review

description: The aim of this scoping review was to determine the evidence that exists about methods to include environmental impacts in health economic evaluations and health technology assessments (HTA). We will consider what methods for including environmental impacts in HTA and health economic evaluations have been taken, explored, or recommended.
The Eclipsing ULX in NGC 3379
Creators: name: Fabbiano, G.
name: Kim, D. -W.
name: Fragos, T.
name: Kalogera, V.
name: King, A. R.
name: Angelini, L.
name: Davies, R. L.
name: Gallagher, J. S.
name: Pellegrini, S.
name: Trinchieri, G.
name: Zepf, S. E.
name: Zezas, A.
Publisher: name: arXiv
Year: 2006
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We report recent Chandra observations of the ULX in the elliptical galaxy NGC3379 that clearly detect two flux variability cycles. Comparing these data with the Chandra observation of ~5yr ago, we measure a flux modulation with a period of ~12.6hr. Moreover, we find that the emission undergoes a correlated spectral modulation, becoming softer at low flux. We argue that our results establish this source as a ULX binary in NGC3379. Given the old stellar population of this galaxy, the ULX is likely to be a soft transient, however historical X-ray sampling suggests that the current on phase has lasted ~10yr. We discuss our results in terms of ADC and wind-feedback models. We constrain the donor mass and orbital period at the onset of mass transfer within 1.15-1.4M and 12.5-16hr, respectively. The duration of the mass-transfer phase so far is probably ~1Gyr and the binary has been a soft X-ray transient throughout this time. These constraints are insensitive to the mass of the accretor.
description: Submitted to ApJ, 16 pages, 3 color figures
MOESM14 of Deletion of HP1γ in cardiac myocytes affects H4K20me3 levels but does not impact cardiac growth
Creators: name: Oyama, Kyohei
name: El-Nachef, Danny
name: Fang, Chen
name: Kajimoto, Hidemi
name: Brown, Jeremy
name: Prim Singh
name: W. MacLellan
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Pharmacology
subject: Ecology
subject: Developmental Biology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 14: Fig. S10. Effect of HP1γ KO on ISO-induced heart growth. ISO (5 μg/g) was injected subcutaneously once a day for 6 days and hearts were harvested. Same volume of saline was injected as a vehicle control. Since there was no difference of HW normalized by BW at base line, all genotype of animals with vehicle injection are grouped as a vehicle control group. Upon ISO treatment, all genotype showed a significant increase in HW/BW compared to vehicle control; however, there was no difference between genotype, indicating that HP1γ KO doesn’t have a significant effect on ISO-induced heart growth. * p
Running Coupling in SU(3) Yang-Mills Theory
Creators: name: Wolff, Ulli
Publisher: name: arXiv
Year: 1993
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: We report about our ongoing computation of running coupling constants in asymptotically free theories using the recursive finite size scaling technique. The latest results for the SU(3) Yang-Mills theory are presented.
description: 3 pages, ps-file 81828 bytes
Carnet nº 25, commencé à Saïgon (p. 37)
Creators: name: Péraire, Lucien
name: CNRS
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2023

description: created: 20-1-1932
JOSS: A journal for open source software that is an open source software project
Creators: name: Katz, Daniel S.
name: Smith, Arfon M.
Publisher: name: Zenodo
Year: 2024

description: This talk is being presented as part of the HiRSE Seminar Series, as the 26th seminar, on February 27, 2024, at 1500 CET.

Abstract: This talk will discuss the Journal of Open Source Software (JOSS), a diamond OA journal for open source research software. JOSS depends on volunteers for almost all of its functions, and most of these volunteers are those who do research software engineering (RSEng) as part of their job, and many of these people who do it for more than half of their job consider themselves research software engineers (RSEs). The talk will discuss how JOSS is run as an open-source community project, and how it interacts with the RSEng community. This includes that JOSS: runs on GitHub using a helpful bot to automate actions; has reviews that are open, collaborative, and constructive; and uses typical open-source mechanisms for communication. While JOSS reviews are checklist-driven, some of the checklist items are not purely binary; instead, they have values of bad, ok, and good, where ok and good are both sufficient to pass, but good is used to push the community to better practices that those that are merely ok. JOSS communication using GitHub issues for discussion of reviews, Slack for internal team discussions, and traditional software project mechanisms including social media to announce publications and news, and the new JOSSCast to provide interviews with some paper authors. JOSS has been demonstrated to scale successfully in terms of both people and costs, and we look forward to continuing to support the research software community move towards more recognition and better practices.
Note Regarding Presidential Meeting with Ambassador Gronouski
Creators: name: United States. Department Of State
Publisher: name: The University of Texas at Austin
Year: 1966
Subjects: Box 200 Folder 7
Box 200 Folder 07
Poland -- Politics and government -- 1945-1980
Poland -- Relations -- United States

description: Note to Rostow from Read proceeding memo on Polish-American relations, currency, bank credits, and trade legislation.
Memo Regarding Appointment with Ambassador Gronouski
Creators: name: United States. Department Of State
Publisher: name: The University of Texas at Austin
Year: 1966
Subjects: Box 200 Folder 7
Box 200 Folder 07
Poland -- Politics and government -- 1945-1980
Poland -- Relations -- United States

description: Memo to President from Rusk recommending future meeting with Ambassador Gronouski to discuss bilateral relations with Poland.
Letter Regarding International Symposium on Banking
Creators: name: Poland. Embassy (Washington, D.C.)
Publisher: name: The University of Texas at Austin
Year: 1966
Subjects: Box 200 Folder 7
Box 200 Folder 07
Poland -- Politics and government -- 1945-1980
Poland -- Relations -- United States

description: Letter to Davies of Klein and Saks from Polish Embassy Financial Attache regarding International Symposium on Banking.
Additional file 1 of Transcriptome and co-expression network analyses of key genes and pathways associated with differential abscisic acid accumulation during maize seed maturation
Creators: name: Niu, Liangjie
name: Du, Cui
name: Wang, Wenrui
name: Zhang, Man
name: Wang, Wei
name: Liu, Hui
name: Zhang, Jinghua
name: Wu, Xiaolin
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Table S1. Statistical analysis of RNA-seq data quality.
Additional file 1: of Association between afterhours admission to the intensive care unit, strained capacity, and mortality: a retrospective cohort study
Creators: name: Hall, Adam
name: Stelfox, Henry
name: Xioaming Wang
name: Guanmin Chen
name: Zuege, Danny
name: Dodek, Peter
name: Garland, Allan
name: Scales, Damon
name: Berthiaume, Luc
name: Zygun, David
name: Bagshaw, Sean
Publisher: name: figshare
Year: 2018
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Summary of path-analysis modeling strategy. (DOCX 33Â kb)
MOESM13 of Deletion of HP1Îł in cardiac myocytes affects H4K20me3 levels but does not impact cardiac growth
Creators: name: Oyama, Kyohei
name: El-Nachef, Danny
name: Fang, Chen
name: Kajimoto, Hidemi
name: Brown, Jeremy
name: Prim Singh
name: W. MacLellan
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 60506 Virology

description: Additional file 13: Fig. S9. Upregulated genes in HP1Îł KO in both sham and TAC. RT-qPCR was performed to confirm differential gene expressed detected by RNA-seq. Two-way ANOVA followed by multiple comparison demonstrated that genotype has significant effect on Cyp2b10 and Dlgap1 expression, but not TAC operation or interaction between genotype and TAC operation.
Defining Tourism Domains for Semantic Annotation of Web Content
Creators: name: Panasiuk, Oleksandra
name: Kärle, Elias
name: Simsek, Umutcan
name: Fensel, Dieter
Publisher: name: arXiv
Year: 2017
Subjects: subject: Information Retrieval (cs.IR)
subject: FOS: Computer and information sciences

description: Schema.org is an initiative by Bing, Google, Yahoo! and Yandex that publishes a vocabulary for creating structured data markup on web pages. The use of schema.org is necessary to increase the visibility of a website, making the content understandable to different automated agents (e.g. search engines, chatbots or personal assistant systems). The domain specifications are the subsets of types from the schema.org vocabulary, each associated with a set of properties. The challenge is to choose the right classes and properties for an annotation in a given domain. In this paper we address the problem of finding a subset of types and properties for complete and correct annotation of different tourism domains. The approach provides a collection of domain specifications that were built based on domain analysis and vocabulary selection.
description: ENTER 2018 Conference on Information and Communication Technologies in Tourism, Published as Research Notes in e-Review of Tourism Research, vol.9
Optimising HEP parameter fits through MC weight derivative regression
Creators: name: Valassi, Andrea
Publisher: name: Zenodo
Year: 2019

description: HEP event selection is traditionally considered a binary classification problem, involving the dichotomous categories of signal and background. In distribution fits for particle masses or couplings, however, signal events are not all equivalent, as the signal differential cross section has different sensitivities to the measured parameter in different regions of phase space. In this talk, I describe a mathematical framework for the evaluation and optimization of HEP parameter fits, where this sensitivity is defined on an event-by-event basis, and for MC events it is modeled in terms of their MC weight derivatives with respect to the measured parameter. Minimising the statistical error on a measurement implies the need to resolve (i.e. separate) events with different sensitivities, which ultimately represents a non-dichotomous classification problem. Since MC weight derivatives are not available for real data, the practical strategy I suggest consists in training a regressor of weight derivatives against MC events, and then using it as an optimal partitioning variable for 1-dimensional fits of data events. I discuss some features and limitations of this approach and I show examples from a simple toy model. This research is an extension of the work I presented at CHEP2018: in particular, event-by-event sensitivities allow the exact computation of the "FIP" ratio (a metric in [0,1]) between the Fisher information obtained from an analysis and the maximum information that could possibly be obtained with an ideal detector. Using this expression, I discuss the relationship between FIP and two metrics commonly used in meteorology (Brier score and MSE), and the importance of "sharpness" in both domains. I finally point out that HEP distribution fits should be optimized and evaluated using probabilistic metrics (like FIP or MSE), whereas ranking metrics (like AUC) or threshold metrics (like "accuracy") are of limited relevance for these specific problems.
Robust formation of topological Hall effect in MnGa/heavy metal bilayers
Creators: name: Meng, Kangkang
name: Zhao, Xupeng
name: Liu, Pengfei
name: Liu, Qi
name: Wu, Yong
name: Chen, Jikun
name: Miao, Jun
name: Xu, Xiaoguang
name: Zhao, Jianhua
name: Jiang, Yong
Publisher: name: arXiv
Year: 2017
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We have investigated the topological Hall effect (THE) in MnGa/Pt and MnGa/Ta bilayers induced by interfacial Dzyaloshinskii-Moriya interaction (DMI). The most evident THE signals have been found based on the MnGa films with small critical DMI energy constant Dc. The large topological portion of the Hall signal from the total Hall signal has been extracted in the whole temperature range from 5 to 300 K. These results open up the exploration of the DMI induced magnetic behavior based on the bulk perpendicular magnetic anisotropy materials for fundamental physics and magnetic storage technologies.
Preamplified photodetectors for high-fidelity postselecting optical devices
Creators: name: Jeffers, John
Publisher: name: arXiv
Year: 2006
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The fidelity of postselecting devices based on direct photon number detection can be significantly improved by insertion of a phase-insensitive optical amplifier in front of the detector. The scheme is simple, and the cost to the probability of obtaining the appropriate detector outcome is low.
description: 5 pages, 7 figures, typos corrected and Journal Ref Added
Additional file 1: of Effects of cyclosporine A pretreatment of deceased organ donors on kidney graft function (Cis-A-rein): study protocol for a randomized controlled trial
Creators: name: Jean-Christophe Orban
name: Fontaine, Eric
name: Cassuto, Elisabeth
name: Baumstarck, Karine
name: Leone, Marc
name: Jean-Michel Constantin
name: Ichai, Carole
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: SPIRIT 2013 Checklist: recommended items to address in a clinical trial protocol and related documents. (DOC 121 kb)
The effects of Moire lattice on the electronic properties of graphene
Creators: name: Huang, Lunan
name: Wu, Yun
name: Hershberger, M. T.
name: Mou, Daixiang
name: Schrunk, Ben
name: Tringides, Michael C.
name: Hupalo, Myron
name: Kaminski, Adam
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We study structural and electronic properties of graphene grown on SiC substrate using scanning tunneling microscope (STM), spot-profile-analysis low energy electron diffraction (SPA-LEED) and angle resolved photoemission spectroscopy (ARPES). We find several new replicas of Dirac cones in the Brillouin zone (BZ). Their locations can be understood in terms of combination of basis vectors linked to SiC 6x6 and graphene 6xsqrt(3) x 6sqrt(3) reconstruction. Therefore these new features originate from the Moie caused by the lattice mismatch between SiC and graphene. More specifically, Dirac cones replicas are caused by underlying weak modulation of the ionic potential by the substrate that is then experienced by the electrons in the graphene. We also demonstrate that this effect is equally strong in single and tri-layer graphene, therefore the additional Dirac cones are intrinsic features rather than result of photoelectron diffraction. These new features in the electronic structure are very important for the interpretation of recent transport measurements and can assist in tuning the properties of graphene for practical applications.
description: 6 pages, 2 figures
Additional file 2 of Transcriptome and co-expression network analyses of key genes and pathways associated with differential abscisic acid accumulation during maize seed maturation
Creators: name: Niu, Liangjie
name: Du, Cui
name: Wang, Wenrui
name: Zhang, Man
name: Wang, Wei
name: Liu, Hui
name: Zhang, Jinghua
name: Wu, Xiaolin
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2: Table S2. Comparison of RNA-seq data with reference genome.
Additional file 3: of A machine learning model to determine the accuracy of variant calls in capture-based next generation sequencing
Creators: name: Akker, Jeroen Van Den
name: Mishne, Gilad
name: Zimmer, Anjali
name: Zhou, Alicia
Publisher: name: figshare
Year: 2018
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Supplemental Methods. Using the model in a clinical laboratory setting. (DOCX 103Â kb)
High resolution HI and radio continuum observations of the SNR G290.1-0.8
Creators: name: Reynoso, Estela M.
name: Johnston, Simon
name: Green, Anne J.
name: Koribalski, Baerbel S.
Publisher: name: arXiv
Year: 2006
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We have observed the supernova remnant (SNR) G290.1-0.8 in the 21-cm HI line and the 20-cm radio continuum using the Australia Telescope Compact Array (ATCA). The HI data were combined with data from the Southern Galactic Plane Survey to recover the shortest spatial frequencies. In contrast, HI absorption was analyzed by filtering extended HI emission, with spatial frequencies shorter than 1.1 k-lambda. The low-resolution ATCA radio continuum image of the remnant shows considerable internal structure, resembling a network of filaments across its 13 arcmin diameter. A high-resolution ATCA radio continuum image was also constructed to study the small scale structure in the SNR. It shows that there are no structures smaller than ~17", except perhaps for a bright knot to the south, which is probably an unrelated object. The HI absorption study shows that the gas distribution and kinematics in front of SNR G290.1-0.8 are complex. We estimate that the SNR probably lies in the Carina arm, at a distance 7 (+/- 1) kpc. In addition, we have studied nearby sources in the observed field using archival multiwavelength data to determine their characteristics.
description: Accepted in Monthly Notices of the Royal Astronomical Society
High resolution ion trap time-of-flight mass spectrometer for cold trapped ion experiments
Creators: name: Schmid, Philipp C.
name: Greenberg, James
name: Miller, Mikhail I.
name: Loeffler, Kevin
name: Lewandowski, Heather J.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: Atomic Physics (physics.atom-ph)
subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: Trapping molecular ions that have been sympathetically cooled with laser-cooled atomic ions is a useful platform for exploring cold ion chemistry. We designed and characterized a new experimental apparatus for probing chemical reaction dynamics between molecular cations and neutral radicals at temperatures below 1 K. The ions are trapped in a linear quadrupole radio-frequency trap and sympathetically cooled by co-trapped, laser-cooled, atomic ions. The ion trap is coupled to a time-of-flight mass spectrometer to readily identify product ion species, as well as to accurately determine trapped ion numbers. We discuss, and present in detail, the design of this ion trap time-of-flight mass spectrometer, as well as the electronics required for driving the trap and mass spectrometer. Furthermore, we measure the performance of this system, which yields mass resolutions of $m/Δm \geq 1100$ over a wide mass range, and discuss its relevance for future measurements in chemical reaction kinetics and dynamics.
description: 9 pages, 9 figures
A Faster, More Accessible RooFit
Creators: name: Hageboeck, Stephan
Publisher: name: Zenodo
Year: 2019

description: RooFit and RooStats, the toolkits for statistical modelling in ROOT, are used in most searches and measurements at the Large Hadron Collider, as well as B factories. The large datasets to be collected in Run 3 will enable measurements with higher precision, but will require faster data processing to keep fitting times stable. In this talk, a redesign of RooFit's internal dataflow will be presented. Cache locality and data loading are improved, and batches of data are processed with vectorised SIMD computations. This improves RooFit's single-thread performance by several orders. In conjunction with multiple workers, this will allow to fit the larger datasets of Run 3 in the same time or faster than today's fits. RooFit's interfaces will further be extended to be more accessible both from C++ and Python to improve interoperability and ease of use.
Relating c<0 and c>0 Conformal Field Theories
Creators: name: Guruswamy, Sathya
name: Ludwig, Andreas W. W.
Publisher: name: arXiv
Year: 1996
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: A `canonical mapping' is established between the c=-1 system of bosonic ghosts and the c=2 complex scalar theory and, a similar mapping between the c=-2 system of fermionic ghosts and the c=1 Dirac theory. The existence of this mapping is suggested by the identity of the characters of the respective theories. The respective c<0 and c>0 theories share the same space of states, whereas the spaces of conformal fields are different. Upon this mapping from their c<0 counterparts, the (c>0) complex scalar and the Dirac theories inherit hidden nonlocal sl(2) symmetries.
description: 23 pages, harvmac
Additional file 1: of Disruption of an amino acid transporter LHT1 leads to growth inhibition and low yields in rice
Creators: name: Wang, Xiaohu
name: Yang, Guangzhe
name: Shi, Mingxing
name: Hao, Dongli
name: Wei, Qiuxing
name: Wang, Zhigang
name: Fu, Shan
name: Su, Yanhua
name: Xia, Jixing
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Figure S1. Transcript level of OsLHT1 in the wild-type and oslht1 plants. Figure S2. Germination rates of the wild-type and oslht1 seeds. Figure S3. Grains of the wild-type and oslht1 mutants. Figure S4. Transcript level of OsLHT1 in the developing organs. Table S1. Raw qRT-PCR data in this study (Fig. 4a). (DOCX 586 kb)
Non locally trivializable $CR$ line bundles over compact Lorentzian $CR$ manifolds
Creators: name: Brinkschulte, Judith
name: Hill, C. Denson
Publisher: name: arXiv
Year: 2017
Subjects: subject: Complex Variables (math.CV)
subject: FOS: Mathematics
subject: 32V05, 32G07

description: We consider compact $CR$ manifolds of arbitrary $CR$ codimension that satisfy certain geometric conditions in terms of their Levi form. Over these compact $CR$ manifolds, we construct a deformation of the trivial $CR$ line bundle over $M$ which is topologically trivial over $M$ but fails to be even locally $CR$ trivializable over any open subset of $M$. In particular, our results apply to compact Lorentzian $CR$ manifolds of hypersurface type.
description: to appear in Annales de l'Institut Fourier
Dissipative Dicke Model with Collective Atomic Decay: Bistability, Noise-Driven Activation and Non-Thermal First Order Superradiance Transition
Creators: name: Gelhausen, Jan
name: Buchhold, Michael
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: FOS: Physical sciences

description: The Dicke model describes the coherent interaction of a laser-driven ensemble of two level atoms with a quantized light field. It is realized within cavity QED experiments, which in addition to the coherent Dicke dynamics feature dissipation due to e.g. atomic spontaneous emission and cavity photon loss. Spontaneous emission supports the uncorrelated decay of individual atomic excitations as well as the enhanced, collective decay of an excitation that is shared by $N$ atoms and whose strength is determined by the cavity geometry. We derive a many-body master equation for the dissipative Dicke model including both spontaneous emission channels and analyze its dynamics on the basis of Heisenberg-Langevin and stochastic Bloch equations. We find that the collective loss channel leads to a region of bistability between the empty and the superradiant state. Transitions between these states are driven by non-thermal, markovian noise. The interplay between dissipative and coherent elements leads to a genuine non-equilibrium dynamics in the bistable regime, which is expressed via a non-conservative force and a multiplicative noise kernel appearing in the stochastic Bloch equations. We present a semiclassical approach, based on stochastic nonlinear optical Bloch equations, which for the infinite-range Dicke Model become exact in the large-$N$-limit. The absence of an effective free energy functional, however, necessitates to include fluctuation corrections with $\mathcal{O}(1/N)$ for finite $N
description: as published in Physical Review A
The Improvement Program in Nonrelativistic Lattice QCD
Creators: name: Morningstar, Colin J.
Publisher: name: arXiv
Year: 1993
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: Progress in the improvement program in nonrelativistic lattice QCD is outlined. The leading radiative corrections to the heavy-quark mass renormalization, energy shift, and two important kinetic coupling coefficients are presented. The reliability of tadpole-improved perturbation theory in determining the energy shift and mass renormalization is demonstrated.
description: 3 pages in uuencoded-compressed-PostScript format, to appear in the Proceedings of LATTICE 93, Dallas, USA, October 1993; Edinburgh Preprint 93/533
Additional file 1: of Identification and characterization of functional modules reflecting transcriptome transition during human neuron maturation
Creators: name: Zhisong He
name: Qianhui Yu
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Figure S1. Robustness of module identification to the choice of insulating parameter (Î˛). (DOCX 213 kb)
Addendum: New approach to the resummation of logarithms in Higgs-boson decays to a vector quarkonium plus a photon [Phys. Rev. D 95, 054018 (2017)]
Creators: name: Bodwin, Geoffrey T.
name: Chung, Hee Sok
name: Ee, June-Haak
name: Lee, Jungil
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: In this addendum to Phys.\ Rev.\ D {\bf 95}, 054018 (2017) we recompute the rates for the decays of the Higgs boson to a vector quarkonium plus a photon, where the vector quarkonium is $J/ψ$, $Υ(1S)$, $Υ(2S)$, or $Υ(3S)$. We correct an error in the Abel-Padé summation formula that was used to carry out the evolution of the quarkonium light-cone distribution amplitude in Phys.\ Rev.\ D {\bf 95}, 054018 (2017). We also correct an error in the scale of quarkonium wave function at the origin in Phys.\ Rev.\ D {\bf 95}, 054018 (2017) and introduce several additional refinements in the calculation.
description: 7 pages, [v2] Abel-Pade summation formula corrected, [v3] PRD version
Manifest Duality in Born-Infeld Theory
Creators: name: Bengtsson, Ingemar
Publisher: name: arXiv
Year: 1996
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Born-Infeld theory is formulated using an infinite set of gauge fields, along the lines of McClain, Wu and Yu. In this formulation electromagnetic duality is generated by a fully local functional. The resulting consistency problems are analyzed and the formulation is shown to be consistent.
description: 15 pages, Latex
Shift-Invariant Kernel Additive Modelling for Audio Source Separation
Creators: name: Yela, Delia Fano
name: Ewert, Sebastian
name: O'Hanlon, Ken
name: Sandler, Mark B.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Sound (cs.SD)
subject: Audio and Speech Processing (eess.AS)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: H.5.5; I.5.1; I.5.4

description: A major goal in blind source separation to identify and separate sources is to model their inherent characteristics. While most state-of-the-art approaches are supervised methods trained on large datasets, interest in non-data-driven approaches such as Kernel Additive Modelling (KAM) remains high due to their interpretability and adaptability. KAM performs the separation of a given source applying robust statistics on the time-frequency bins selected by a source-specific kernel function, commonly the K-NN function. This choice assumes that the source of interest repeats in both time and frequency. In practice, this assumption does not always hold. Therefore, we introduce a shift-invariant kernel function capable of identifying similar spectral content even under frequency shifts. This way, we can considerably increase the amount of suitable sound material available to the robust statistics. While this leads to an increase in separation performance, a basic formulation, however, is computationally expensive. Therefore, we additionally present acceleration techniques that lower the overall computational complexity.
description: Feedback is welcome
MOESM12 of Deletion of HP1γ in cardiac myocytes affects H4K20me3 levels but does not impact cardiac growth
Creators: name: Oyama, Kyohei
name: El-Nachef, Danny
name: Fang, Chen
name: Kajimoto, Hidemi
name: Brown, Jeremy
name: Prim Singh
name: W. MacLellan
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Additional file 12: Fig. S8. No difference in cycling CM in HP1γ KO heart. TAC or Sham surgeries were performed at 10–12 weeks and hearts harvested 1 week after operations. Heart tissues were stained for Ki67 (white), Hoechst (red) and WGA (green). Scale bar indicates 100 μm.
Sequential Generation of Matrix-Product States in Cavity QED
Creators: name: Schoen, C.
name: Hammerer, K.
name: Wolf, M. M.
name: Cirac, J. I.
name: Solano, E.
Publisher: name: arXiv
Year: 2006
Subjects: subject: Quantum Physics (quant-ph)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We study the sequential generation of entangled photonic and atomic multi-qubit states in the realm of cavity QED. We extend the work of C. Schoen et al. [Phys. Rev. Lett. 95, 110503 (2005)], where it was shown that all states generated in a sequential manner can be classified efficiently in terms of matrix-product states. In particular, we consider two scenarios: photonic multi-qubit states sequentially generated at the cavity output of a single-photon source and atomic multi-qubit states generated by their sequential interaction with the same cavity mode.
description: 11 pages
Reconstruction of track candidates at the LHC crossing rate using FPGAs
Creators: name: Tuci, Giulia
Publisher: name: Zenodo
Year: 2019

description: In 2021 the LHCb experiment will be upgraded, and the DAQ system will be based on full reconstruction of events, at the full LHC crossing rate. This requires an entirely new system, capable of reading out, building and reconstructing events at an average rate of 30 MHz. In facing this challenge, the system could take advantage of a fast pre-processing of data on dedicated FPGAs. We present the results of an R&D on these technologies developed in the context of the LHCb Upgrade I. In particular, we discuss the details and potential benefits of an approach based on producing in real-time sorted collections of hits in the VELO detector (pre-tracks). These pre-processed data can then be used as seeds by the High Level Trigger (HLT) farm to find tracks for the Level 1 trigger with much lower computational effort than possible by starting from the raw detector data, thus freeing an important fraction of the power of the CPU farm for higher level processing tasks.
Higher order contributions to the primordial non-gaussianity
Creators: name: Zaballa, Ignacio
name: Rodriguez, Yeinzon
name: Lyth, David H.
Publisher: name: arXiv
Year: 2006
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: In this paper we calculate additional contributions to that part of the non-Gaussianity of the curvature perturbation, which come from the three-point correlator of the field perturbations. We estimate this contribution in the following models for its origin: single-component inflation, multi-component chaotic inflation, a two-component "hybrid" inflationary model, and the curvaton scenario. In all of these models, the additional contributions to the primordial non-gaussianity considered here, are too small to be ever detected.
description: 6 pages. 2 figures. Typos corrected. Version accepted in JCAP
Exomoon Habitability and Tidal Evolution in Low-Mass Star Systems
Creators: name: Zollinger, Rhett R.
name: Armstrong, John C.
name: Heller, René
Publisher: name: arXiv
Year: 2017
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: Discoveries of extrasolar planets in the habitable zone (HZ) of their parent star lead to questions about the habitability of massive moons orbiting planets in the HZ. Around low-mass stars, the HZ is much closer to the star than for Sun-like stars. For a planet-moon binary in such a HZ, the proximity of the star forces a close orbit for the moon to remain gravitationally bound to the planet. Under these conditions the effects of tidal heating, distortion torques, and stellar perturbations become important considerations for exomoon habitability. Utilizing a model that considers both dynamical and tidal interactions simultaneously, we performed a computational investigation into exomoon evolution for systems in the HZ of low-mass stars ($\lesssim 0.6\ M_{\odot}$). We show that dwarf stars with masses $\lesssim 0.2\ M_{\odot}$ cannot host habitable exomoons within the stellar HZ due to extreme tidal heating in the moon. Perturbations from a central star may continue to have deleterious effects in the HZ up to $\approx 0.5\ M_{\odot}$, depending on the host planet's mass and its location in the HZ, amongst others. In addition to heating concerns, torques due to tidal and spin distortion can lead to the relatively rapid inward spiraling of a moon. Therefore, moons of giant planets in HZs around the most abundant type of star are unlikely to have habitable surfaces. In cases with lower intensity tidal heating the stellar perturbations may have a positive influence on exomoon habitability by promoting long-term heating and possibly extending the HZ for exomoons.
description: accepted by MNRAS, 20 pages, 8 figures in main text (7 col, 1 b/w)
title: Constraining parameter uncertainty in modeling debris-flow initiation during the September 2013 Colorado Front Range storm
Creators: name: Baum, Rex L.
name: Scheevel, Caroline R.
name: Jones, Eric S.
Publisher: name: Mountain Scholar
Year: 2019
Subjects: debris flow
rainfall-induced landslides
numerical models
parameter uncertainty
Colorado Front Range

description: The occurrence of debris flows during the September 2013 northern Colorado floods took the emergency management community by surprise. The September 2013 debris flows in the Colorado Front Range initiated from shallow landslides in colluvium. Most occurred on south- and east-facing slopes on the walls of steep canyons in crystalline rocks and on sedimentary hogbacks. Previous studies showed that most debris flows occurred in areas of high storm-total rainfall and that strength added by tree roots accounts for the low number of landslides in densely forested areas. Given the lack of rainfall thresholds for debris flow occurrence in northern Colorado, we want to parameterize a numerical model to assess potential for debris flows in advance of heavy rainfall. Natural Resources Conservation Service (NRCS) soil mapping of the area, supplemented by laboratory testing and field measurements, indicates that soil textures and hydraulic properties of landslide source materials vary considerably over the study area. As a step toward modeling storm response, available soil and geologic mapping have been interpreted to define zones of relatively homogeneous properties. A new, simplified modeling approach for evaluating model input parameters in the context of slope and depth of observed debris flow source areas and recorded debris-flow inducing rainfall helps narrow the range of possible parameters to those most likely to produce model results consistent with observed debris flow initiation. Initial results have narrowed the strength parameters to about one third of possible combinations of cohesion and internal friction angle and narrowed hydraulic conductivity to a range spanning slightly more than one order of magnitude.