cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Near-Field Enhancement of Optical Second Harmonic Generation in Hybrid Gold-Lithium Niobate Nanostructures
Creators: name: Ali, Rana Faryad
name: Busche, Jacob A.
name: Kamal, Saeid
name: Masiello, David J.
name: Gates, Byron D.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Optics (physics.optics)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Applied Physics (physics.app-ph)
subject: FOS: Physical sciences

description: Nanophotonics research has focused recently on the ability of non-linear optical processes to mediate and transform optical signals in a myriad of novel devices, including optical modulators, transducers, color filters, photodetectors, photon sources, and ultrafast optical switches. The inherent weakness of optical nonlinearities at smaller scales has, however, hindered the realization of efficient miniaturized devices, and strategies for enhancing both device efficiencies and synthesis throughput via nanoengineering remain limited. Here, we demonstrate a novel mechanism by which second harmonic generation, a prototypical non-linear optical phenomenon, from individual lithium niobate particles can be significantly enhanced through nonradiative coupling to the localized surface plasmon resonances of embedded gold nanoparticles. A joint experimental and theoretical investigation of single mesoporous lithium niobate particles coated with aispersed layer of $\sim$10-nm diameter gold nanoparticles shows that a $\sim$32-fold enhancement of second harmonic generation can be achieved without introducing finely tailored radiative nanoantennas to mediate photon transfer to or from the non-linear material. This work highlights the limitations of current strategies for enhancing non-linear optical phenomena and proposes a route through which a new class of subwavelength nonlinear optical platforms can be designed to maximize non-linear efficiencies through near-field energy exchange.
description: Main text: 12 pages, 4 figures. Supplementary information: 47 pages, 18 figures, 4 tables. Edits, v2: Corrected typos in metadata
Additional file 2: Table S1. of Increased peri-ductal collagen micro-organization may contribute to raised mammographic density
Creators: name: McConnell, James
name: OâConnell, Oliver
name: Brennan, Keith
name: Weiping, Lisa
name: Howe, Miles
name: Joseph, Leena
name: Knight, David
name: OâCualain, Ronan
name: Yit Lim
name: Leek, Angela
name: Waddington, Rachael
name: Rogan, Jane
name: Astley, Susan
name: Ashu Gandhi
name: Cliona Kirwan
name: Sherratt, Michael
name: Streuli, Charles
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Plant Biology

description: Breast extracellular matrix (ECM) proteomic data. This table shows the ECM proteins detected in our mass spectrometry analysis of human breast tissue, plus those identified by mass spectrometry in rat mammary tumours, and the ECM of tumours resulting from the in vivo growth of the MD-MBA-231 breast cancer line. Green boxes indicate proteins that were identified in the analyses, red boxes show proteins not identified. The differences in expression may arise because completely different samples have been used, e.g., human vs rat, and normal human breast tissue vs a cancer line model. (DOC 124 kb)
Parameterizing Path Partitions
Creators: name: Fernau, Henning
name: Foucaud, Florent
name: Mann, Kevin
name: Padariya, Utkarsh
name: N, Rajath Rao K.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Data Structures and Algorithms (cs.DS)
subject: FOS: Computer and information sciences

description: We study the algorithmic complexity of partitioning the vertex set of a given (di)graph into a small number of paths. The Path Partition problem (PP) has been studied extensively, as it includes Hamiltonian Path as a special case. The natural variants where the paths are required to be either \emph{induced} (Induced Path Partition, IPP) or \emph{shortest} (Shortest Path Partition, SPP), have received much less attention. Both problems are known to be NP-complete on undirected graphs; we strengthen this by showing that they remain so even on planar bipartite directed acyclic graphs (DAGs), and that SPP remains NP-hard on undirected bipartite graphs. When parameterized by the natural parameter ``number of paths'', both SPP and IPP are shown to be W[1]-hard on DAGs. We also show that SPP is in XP both for DAGs and undirected graphs for the same parameter, as well as for other special subclasses of directed graphs (IPP is known to be NP-hard on undirected graphs, even for two paths). On the positive side, we show that for undirected graphs, both problems are in FPT, parameterized by neighborhood diversity. We also give an explicit algorithm for the vertex cover parameterization of PP. When considering the dual parameterization (graph order minus number of paths), all three variants, IPP, SPP and PP, are shown to be in FPT for undirected graphs. We also lift the mentioned neighborhood diversity and dual parameterization results to directed graphs; here, we need to define a proper novel notion of directed neighborhood diversity. As we also show, most of our results transfer to the case of covering by edge-disjoint paths, and purely covering.
description: 31 pages, 8 figures. A short version appeared in the proceedings of the CIAC 2023 conference; this version appeared in the special issue devoted to selected papers from CIAC 2023
A Comparison of Neural Models for Word Ordering
Creators: name: Hasler, E
name: Stahlberg, F
name: Tomalin, M
name: De Gispert, A
name: Byrne, WJ
Publisher: name: ACL
Year: 2017

description: We compare several language models for the word-ordering task and propose a new bag- to-sequence neural model based on attention-based sequence-to-sequence models. We evaluate the model on a large German WMT data set where it significantly outperforms existing models. We also describe a novel search strategy for LM-based word ordering and report results on the English Penn Treebank. Our best model setup outperforms prior work both in terms of speed and quality.
Local behavior of the Eden model on graphs and tessellations of manifolds
Creators: name: Hua, Dongming
name: Manin, Fedor
name: Queer, Tahda
name: Wang, Tianyi
Publisher: name: arXiv
Year: 2022
Subjects: subject: Probability (math.PR)
subject: Algebraic Topology (math.AT)
subject: FOS: Mathematics

description: The Eden Model in $\mathbb{R}^n$ constructs a blob as follows: initially a single unit hypercube is infected, and each second a hypercube adjacent to the infected ones is selected randomly and infected. Manin, Roldán, and Schweinhart investigated the topology of the Eden model in $\mathbb{R}^{n}$ by considering the possible shapes which can appear on the boundary. In particular, they give probabilistic lower bounds on the Betti numbers of the Eden model. In this paper, we prove analogous results for the Eden model on any infinite, vertex-transitive, locally finite graph: with high probability as time goes to infinity, every "possible" subgraph (with mild conditions on what "possible" means) occurs on the boundary of the Eden model at least a number of times proportional to an isoperimetric profile of the graph. Using this, we can extend the results about the topology of the Eden model to non-Euclidean spaces, such as hyperbolic $n$-space and universal covers of certain Riemannian manifolds.
description: 35 pages, 6 figures; revisions in response to referee reports
Additional file 1: of Single time point comparisons in longitudinal randomized controlled trials: power and bias in the presence of missing data
Creators: name: Ashbeck, Erin
name: Bell, Melanie
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Supplemental Methods and Results. (DOCX 76 kb)
Quantitative Verification with Neural Networks
Creators: name: Abate, Alessandro
name: Edwards, Alec
name: Giacobbe, Mirco
name: Punchihewa, Hashan
name: Roy, Diptarko
Publisher: name: arXiv
Year: 2023
Subjects: subject: Logic in Computer Science (cs.LO)
subject: Programming Languages (cs.PL)
subject: Systems and Control (eess.SY)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: F.3.1; D.2.4

description: We present a data-driven approach to the quantitative verification of probabilistic programs and stochastic dynamical models. Our approach leverages neural networks to compute tight and sound bounds for the probability that a stochastic process hits a target condition within finite time. This problem subsumes a variety of quantitative verification questions, from the reachability and safety analysis of discrete-time stochastic dynamical models, to the study of assertion-violation and termination analysis of probabilistic programs. We rely on neural networks to represent supermartingale certificates that yield such probability bounds, which we compute using a counterexample-guided inductive synthesis loop: we train the neural certificate while tightening the probability bound over samples of the state space using stochastic optimisation, and then we formally check the certificate's validity over every possible state using satisfiability modulo theories; if we receive a counterexample, we add it to our set of samples and repeat the loop until validity is confirmed. We demonstrate on a diverse set of benchmarks that, thanks to the expressive power of neural networks, our method yields smaller or comparable probability bounds than existing symbolic methods in all cases, and that our approach succeeds on models that are entirely beyond the reach of such alternative techniques.
description: The conference version of this manuscript appeared at CONCUR 2023
Noncommutative Vieta Theorem in Clifford Geometric Algebras
Creators: name: Shirokov, D. S.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Rings and Algebras (math.RA)
subject: Mathematical Physics (math-ph)
subject: FOS: Mathematics
subject: FOS: Physical sciences
subject: 15A66, 11E88

description: In this paper, we discuss a generalization of Vieta theorem (Vieta's formulas) to the case of Clifford geometric algebras. We compare the generalized Vieta's formulas with the ordinary Vieta's formulas for characteristic polynomial containing eigenvalues. We discuss Gelfand--Retakh noncommutative Vieta theorem and use it for the case of geometric algebras of small dimensions. We introduce the notion of a simple basis-free formula for a determinant in geometric algebra and prove that a formula of this type exists in the case of arbitrary dimension. Using this notion, we present and prove generalized Vieta theorem in geometric algebra of arbitrary dimension. The results can be used in symbolic computation and various applications of geometric algebras in computer science, computer graphics, computer vision, physics, and engineering.
description: 20 pages
Additional file 1: Table S1. of Dietary patterns and the risk of oral, pharyngeal and laryngeal cancer in Syria: a case control study
Creators: name: Joury, Easter
name: Naja, Farah
name: Nour, Amira
name: Itani, Leila
name: Rafii, Bayan
name: Nakhleh, Kamal
name: Manadili, Ahmad
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology

description: Classification of food item. (PDF 47Â kb)
A unified theory for bubble dynamics
Creators: name: Zhang, A-Man
name: Li, Shi-Min
name: Cui, Pu
name: Li, Shuai
name: Liu, Yun-Long
Publisher: name: arXiv
Year: 2023
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: In this work, we established a novel theory for the dynamics of oscillating bubbles such as cavitation bubbles, underwater explosion bubbles, and air bubbles. For the first time, we proposed bubble dynamics equations that can simultaneously take into consideration the effects of boundaries, bubble interaction, ambient flow field, gravity, bubble migration, fluid compressibility, viscosity, and surface tension while maintaining a unified and elegant mathematical form. The present theory unifies different classical bubble equations such as the Rayleigh-Plesset equation, the Gilmore equation, and the Keller-Miksis equation. Furthermore, we validated the theory with experimental data of bubbles with a variety in scales, sources, boundaries, and ambient conditions and showed the advantages of our theory over the classical theoretical models, followed by a discussion on the applicability of the present theory based on a comparison to simulation results with different numerical methods. Finally, as a demonstration of the potential of our theory, we modeled the complex multi-cycle bubble interaction with wide ranges of energy and phase differences and gained new physical insights into inter-bubble energy transfer and coupling of bubble-induced pressure waves.
Evacanthus acuminatus
Creators: name: Borodin, Oleg
name: Borodina, Olga
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Cicadellidae
Evacanthus
Evacanthus acuminatus

description: Evacanthus acuminatus (Fabricius, 1794) –
[Nast, 1972; Vilbaste, 1973; Vilbaste, 1974; Nast, 1987; Spuris, 1996b; Söderman, Gillerfors, Endrestol, 2009].
  Evacanthus interruptus (Linnaeus, 1758) –  [Velce, 1968; Nast, 1972; Velce, 1972; Danka, 1973; Vilbaste, 1973; Vilbaste, 1974; Nast, 1987; Spuris, 1996b; Söderman, Gillerfors, Endrestol, 2009; Petrova, Jankevica, Samsone, 2013].
description: Published as part of Borodin, Oleg & Borodina, Olga, 2021, Fulgoromorpha & Cicadomorpha (Hemiptera) Of Latvia. Current State Of Study, pp. 155-184 in Acta Biologica Universitatis Daugavpiliensis 21 (2) on page 165, DOI: 10.5281/zenodo.12645231
The algebraic stability for persistent Laplacians
Creators: name: Liu, Jian
name: Li, Jingyan
name: Wu, Jie
Publisher: name: arXiv
Year: 2023
Subjects: subject: Algebraic Topology (math.AT)
subject: FOS: Mathematics

description: The stability of topological persistence is one of the fundamental issues in topological data analysis. Numerous methods have been proposed to address the stability of persistent modules or persistence diagrams. Recently, the concept of persistent Laplacians has emerged as a novel approach to topological persistence, attracting significant attention and finding applications in various fields. In this paper, we investigate the stability of persistent Laplacians. We introduce the notion of ``Laplacian trees'', which captures the collection of persistent Laplacians that persist from a given parameter. To formalize our study, we construct the category of Laplacian trees and establish an algebraic stability theorem for persistent Laplacian trees. Notably, our stability theorem is applied to the real-valued functions on simplicial complexes and digraphs.
Theory of Quantum Circuits with Abelian Symmetries
Creators: name: Marvian, Iman
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Physics (quant-ph)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: Quantum circuits with gates (local unitaries) respecting a global symmetry have broad applications in quantum information science and related fields, such as condensed matter theory and quantum thermodynamics. However, despite their widespread use, fundamental properties of such circuits are not well-understood. Recently, it was found that generic unitaries respecting a global symmetry cannot be realized, even approximately, using gates that respect the same symmetry. This observation raises important open questions: What unitary transformations can be realized with k-local gates that respect a global symmetry? In other words, in the presence of a global symmetry, how does the locality of interactions constrain the possible time evolution of a composite system? In this work, we address these questions for the case of Abelian (commutative) symmetries and develop constructive methods for synthesizing circuits with such symmetries. Remarkably, as a corollary, we find that, while the locality of interactions still imposes additional constraints on realizable unitaries, certain restrictions observed in the case of non-Abelian symmetries do not apply to circuits with Abelian symmetries. For instance, in circuits with a general non-Abelian symmetry such as SU($d$), the unitary realized in a subspace with one irreducible representation (charge) of the symmetry dictates the realized unitaries in multiple other sectors with inequivalent representations of the symmetry. Furthermore, in certain sectors, rather than all unitaries respecting the symmetry, the realizable unitaries are the symplectic or orthogonal subgroups of this group. We prove that none of these restrictions appears in the case of Abelian symmetries. This result suggests that global non-Abelian symmetries may affect the thermalization of quantum systems in ways not possible under Abelian symmetries.
description: V3: Typos corrected; close to the published version
INNOVATIVE PEDAGOGICAL TECHNOLOGIES IN EDUCATIONAL SYSTEM
Creators: name: Elov, Olimdjon
name: Mirzayeva, Dilnavoz
Publisher: name: Zenodo
Year: 2024

description: This article analyzes the importance and role of innovative pedagogical technologies in the educational process. Innovative technologies aim to make students' learning activities more effective, interactive, and engaging, incorporating modern methods such as computer and internet technologies, multimedia tools, virtual reality (VR), and gamification. The article also discusses blended learning and personalized learning processes for students, as well as the impact on the professional development of teachers. Additionally, the challenges faced in implementing innovative technologies in the education system are examined, including the lack of technical resources and issues related to teacher training. The article explores the opportunities for effectively applying innovative pedagogical technologies in education and presents key strategies for improving the quality of education through their use.
Additional file 3: Table S2. of Increased peri-ductal collagen micro-organization may contribute to raised mammographic density
Creators: name: McConnell, James
name: OâConnell, Oliver
name: Brennan, Keith
name: Weiping, Lisa
name: Howe, Miles
name: Joseph, Leena
name: Knight, David
name: OâCualain, Ronan
name: Yit Lim
name: Leek, Angela
name: Waddington, Rachael
name: Rogan, Jane
name: Astley, Susan
name: Ashu Gandhi
name: Cliona Kirwan
name: Sherratt, Michael
name: Streuli, Charles
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Science Policy

description: Peptide frequencies for individual proteins identified in the mass spectrometry analysis. This table includes accession number, gene name and raw expression values for low and high mass spectrometry (MD) samples. (DOC 208 kb)
Additional file 1: of An exploratory study on equity in funding allocation for essential medicines and health supplies in Ugandaâ  s public sector
Creators: name: Kusemererwa, Donna
name: Alban, Anita
name: Ocwa Obua
name: Trap, Birna
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy
subject: Computational Biology

description: The data collection tool is attached in Additional file 1. (DOCX 169Â kb)
Cicadella lasiocarpae Ossiannilsson 1981
Creators: name: Borodin, Oleg
name: Borodina, Olga
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Cicadellidae
Cicadella
Cicadella lasiocarpae

description: Cicadella lasiocarpae Ossiannilsson, 1981 –  [Ziemelis, 2012, 2014].
  Cicadella viridis (Linnaeus, 1758) –  [Velce, 1968; Nast, 1972; Velce, 1972; Danka, 1973; Vilbaste, 1973; Vilbaste, 1974; Varzinska, 1983; Nast, 1987; Spuris, 1995; Spuris, 1996a; Spuris, 1996b; Spungis, 2002, 8-15; Söderman, Gillerfors, Endrestol, 2009]; = Tettigella viridis L. [Данка, 1964].
description: Published as part of Borodin, Oleg & Borodina, Olga, 2021, Fulgoromorpha & Cicadomorpha (Hemiptera) Of Latvia. Current State Of Study, pp. 155-184 in Acta Biologica Universitatis Daugavpiliensis 21 (2) on page 165, DOI: 10.5281/zenodo.12645231
Analyzing the speed of sound in neutron star with machine learning
Creators: name: Chatterjee, Sagnik
name: Sudhakaran, Harsha
name: Mallick, Ritam
Publisher: name: arXiv
Year: 2023
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Matter properties at the intermediate densities are still unknown to us. In this work, we use a neural network approach to study matter at intermediate densities to analyze the variation of the speed of sound and the measure of trace anomaly considering astrophysical constraints of mass-radius measurement of 18 neutron stars. Our numerical results show that there is a sharp rise in the speed of sound just beyond the saturation energy density. It attains a peak around $3-4$ times the saturation energy density and, after that, decreases. This hints towards the appearance of new degrees of freedom and smooth transition from hadronic matter in massive stars. The trace anomaly is maximum at low density (surface of the stars) and decreases as we reach high density. It approaches zero and can even be slightly negative at the centre of massive stars. It has a negative trough beyond the maximal central densities of neutron stars. The change in sign of the trace anomaly hints towards a near-conformal matter at the centre of neutron stars, which may not necessarily be conformal quark matter.
description: 15 pages, 13 figures
Probing the formation of dark interlayer excitons via ultrafast photocurrent
Creators: name: Yagodkin, Denis
name: Ankerhold, Elias
name: Kumar, Abhijeet
name: Richter, Johanna
name: Watanabe, Kenji
name: Taniguchi, Takashi
name: Gahl, Cornelius
name: Bolotin, Kirill. I.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Optically dark excitons determine a wide range of properties of photoexcited semiconductors yet are hard to access via conventional spectroscopies. Here, we develop a time-resolved ultrafast photocurrent technique (trPC) to probe the formation dynamics of optically dark excitons. The nonlinear nature of the trPC makes it particularly sensitive to the formation of excitons occurring at the femtosecond timescale after the excitation. As proof of principle, we extract the interlayer exciton formation time 0.4~ps at 160 $μ$J/cm$^2$ fluence in a MoS$_2$/MoSe$_2$ heterostructure and show that this time decreases with fluence. In addition, our approach provides access to the dynamics of carriers and their interlayer transport. Overall, our work establishes trPC as a technique to study dark excitons in various systems that are hard to probe by other approaches.
Additional file 1: Table S1. of Stunting is associated with blood lead concentration among Bangladeshi children aged 2-3 years
Creators: name: Gleason, Kelsey
name: Valeri, Linda
name: A. Shankar
name: Md Hasan
name: Quazi Quamruzzaman
name: Rodrigues, Ema
name: Christiani, David
name: Wright, Robert
name: Bellinger, David
name: Mazumdar, Maitreyi
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Demographics of total, current and excluded population. Table S2. Heavy metal exposure distribution of total, current and excluded population. (DOCX 30 kb)
Effect Handlers for Programmable Inference
Creators: name: Nguyen, Minh
name: Perera, Roly
name: Wang, Meng
name: Ramsay, Steven
Publisher: name: arXiv
Year: 2023
Subjects: subject: Programming Languages (cs.PL)
subject: FOS: Computer and information sciences

description: Inference algorithms for probabilistic programming are complex imperative programs with many moving parts. Efficient inference often requires customising an algorithm to a particular probabilistic model or problem, sometimes called inference programming. Most inference frameworks are implemented in languages that lack a disciplined approach to side effects, which can result in monolithic implementations where the structure of the algorithms is obscured and inference programming is hard. Functional programming with typed effects offers a more structured and modular foundation for programmable inference, with monad transformers being the primary structuring mechanism explored to date.
 This paper presents an alternative approach to inference programming based on algebraic effects. Using effect signatures to specify the key operations of the algorithms, and effect handlers to modularly interpret those operations for specific variants, we develop two abstract algorithms, or inference patterns, representing two important classes of inference: Metropolis-Hastings and particle filtering. We show how our approach reveals the algorithms' high-level structure, and makes it easy to tailor and recombine their parts into new variants. We implement the two inference patterns as a Haskell library, and discuss the pros and cons of algebraic effects vis-a-vis monad transformers as a structuring mechanism for modular imperative algorithm design.
Additional file 1: Figure S1. of Deep brain stimulation-associated brain tissue imprints: a new in vivo approach to biological research in human Parkinson’s disease
Creators: name: Affif Zaccaria
name: Bouamrani, Ali
name: Chabardès, Stephan
name: Atifi, Michèle El
name: Seigneuret, Eric
name: Lobrinus, Johannes
name: Dubois-Dauphin, Michel
name: Berger, François
name: Burkhard, Pierre
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: BTI-associated immunohistochemical analyses. Immunostaining of the dilator-bound material (X200) revealed (top) the presence of many cells by hematoxylin-eosin staining among which (middle) neurons by neuronal nuclei (NeuN) staining and (bottom) astrocytes by glial fibrillary acid protein (GFAP) staining. (DOCX 551 kb)
Megapalaeolenus Chang 1966
Creators: name: Zhao, Wenyu
name: Liu, Jianni
name: Bicknell, Russell D. C.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Trilobita
Ptychopariida
Palaeolenidae
Megapalaeolenus

description: Genus MEGAPALAEOLENUS Chang, 1966
Type species. Megapalaeolenus deprati Mansuy, 1912 by original designation (Chang 1966).
description: Published as part of Zhao, Wenyu, Liu, Jianni & Bicknell, Russell D. C., 2020, Geometric morphometric assessment of Guanshan trilobites (Yunnan Province, China) reveals a limited diversity of palaeolenid taxa, pp. 1-15 in Palaeontologia Electronica (a 22) (a 22) 23 (2) on page 10, DOI: 10.26879/1062, http://zenodo.org/record/10961770
Notions of enriched purity
Creators: name: Rosický, Jiří
name: Tendas, Giacomo
Publisher: name: arXiv
Year: 2023
Subjects: subject: Category Theory (math.CT)
subject: FOS: Mathematics
subject: 18D20, 18A32, 18F75, 18G35

description: We introduce enriched notions of purity depending on the left class $\mathcal E$ of a factorization system on the base $\mathcal V$ of enrichment. Ordinary purity is given by the class of surjective mappings in the category of sets. Under specific assumptions, covering enrichment over quantale-valued metric spaces, $ω$-complete posets, and quasivarieties, we characterize the $(λ,\mathcal E)$-injectivity classes of locally presentable $\mathcal V$-categories in terms of closure under a class of limits, $λ$-filtered colimits, and $(λ,\mathcal E)$-pure subobjects.
description: Final journal version
Quasi-particle propagation across semiconductor-Mott insulator interfaces
Creators: name: Verlage, Jan
name: Queisser, Friedemann
name: Szpak, Nikodem
name: König, Jürgen
name: Kratzer, Peter
name: Schützhold, Ralf
Publisher: name: arXiv
Year: 2023
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: As a prototypical example for a heterostructure combining a weakly and a strongly interacting quantum many-body system, we study the interface between a semiconductor and a Mott insulator. Via the hierarchy of correlations, we derive and match the propagating or evanescent (quasi) particle solutions on both sides and assume that the interactions among the electrons in the semiconducting regions can be absorbed by an effective potential. While the propagation is described by a band-like dispersion in both the weakly and the strongly interacting case, the inverse decay length across the interface follows a different dependence on the band gap in the Mott insulator and the semiconductor. As one consequence, tunnelling through a Mott insulating layer behaves quite differently from a semiconducting (or band insulating) layer. For example, we find a strong suppression of tunnelling for energies in the middle between the upper and lower Hubbard band of the Mott insulator.
Additional file 2: of Single time point comparisons in longitudinal randomized controlled trials: power and bias in the presence of missing data
Creators: name: Ashbeck, Erin
name: Bell, Melanie
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Cell Biology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Marine Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Supplement SAS simulation and analysis ELA20160310. (PDF 17 kb)
Alebra Fieber 1872
Creators: name: Borodin, Oleg
name: Borodina, Olga
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Cicadellidae
Alebra

description: Alebra Fieber, 1872
  Alebra albostriella (Fallen, 1826) –  [Nast, 1972; Vilbaste, 1973; Vilbaste, 1974; Nast, 1987; Spuris, 1996b; Ануфриев, Кириллова, 1998; Söderman, Gillerfors, Endrestol, 2009; Petrova, Jankevica, Samsone, 2013].
  Alebra wahlbergi (Boheman, 1845 –  [Nast, 1972; Danka, 1973; Vilbaste, 1973; Vilbaste, 1974; Ossiannilsson, 1981; Nast, 1987; Spuris, 1996b; Ануфриев, Кириллова, 2001; Söderman, Gillerfors, Endrestol, 2009].
description: Published as part of Borodin, Oleg & Borodina, Olga, 2021, Fulgoromorpha & Cicadomorpha (Hemiptera) Of Latvia. Current State Of Study, pp. 155-184 in Acta Biologica Universitatis Daugavpiliensis 21 (2) on page 165, DOI: 10.5281/zenodo.12645231
Megapalaeolenus deprati
Creators: name: Zhao, Wenyu
name: Liu, Jianni
name: Bicknell, Russell D. C.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Trilobita
Ptychopariida
Palaeolenidae
Megapalaeolenus
Megapalaeolenus deprati

description: Megapalaeolenus deprati (Mansuy, 1912)
Figure 6
1912 Palaeolenus deprati Mansuy. Mansuy, p. 30, pl. 4, fig. 3a, b.
1941 Palaeolenus deprati Mansuy. Lu, p. 84, pl. 1, fig. 12a-c.
1965 Palaeolenus deprati Mansuy. Lu, Chang, Chu, Chien, and Hsiang, p. 83, pl. 12, fig. 10.
1966 Megapalaeolenus deprati Mansuy. Chang, p. 150
1978 Megapalaeolenus deprati Mansuy. Zhou and Lin, p. 148, pl. 24, figs. 5, 6.
1980 Megapalaeolenus deprati Mansuy. Chang, Lu, Chu, Chien, Lin, Zhou, Zhang, and Yuan, p. 232, pl. 72, figs. 2-5.
2007 Megapalaeolenus deprati Mansuy. Luo, Li, Hu, Fu, Hou, You, Pang, and Liu, p. 317, pl. 3, figs. 1-14.
2008 Megapalaeolenus deprati Mansuy. Luo, Li, Hu, Fu, Hou, Liu, Chen, Li, Pang, and Liu, p. 77, pl. 19, figs. 4-14.
2013 Megapalaeolenus deprati Mansuy. Hu, Zhu, Luo, Steiner, Zhao, Li, Liu, and Zhang, p. 101, figs. 125-129.
2014 Megapalaeolenus deprati Mansuy. Luo, Hu, Chen, Zhan, and Lu, p. 564, pl. 1, figs. 1-8; pl.
2, figs. 1-7.
Referred material. HLQ-3, HLQ-14, HLQ-19, HLQ-22, HLQ-33, HLQ-37, HLQ-39, HLQ-40, HLQ-46, HLQ-50.
Diagnosis. Megapalaeolenus with short (tr.) ocular ridges, long (exs.) palpebral lobes, subparallel to the axial furrow with a robust glabella that is expanded anteriorly, a relatively narrow (tr.) fixigena, more curved pleural spines and wider (tr.) pleural lobes.
Description. Body ovate, with a length (sag.) of 2- 3 cm. Cephalon half elliptic. Palpebral lobe consistently longer (exs.) than ocular ridge, subparallel to axial furrow. Glabella rounded and its anterior part expanded. The number of glabellar furrows is variable due to taphonomic alteration, but can be up to four. The fixigena is narrower (tr.) to equally wide compared to the librigena. The postero-lateral projection is relatively short (sag.) and wide (tr.). The number of thoracic tergites is 15. The pleural lobe is pronouncedly wider (tr.) than axial lobe. The semi-elliptical pygidium is much smaller than the cephalon and is divided into two parts by one transverse furrow. The axial lobe of pygidium is relatively wide compared to the pleural lobe.
Remarks. The geometric morphometric results show that Megepalaeolenus deprati and Palaeolenus douvillei occupy different areas of morphospace. M. deprati can be differentiated from P. douvillei by more rounded glabella, longer (sag.) palpebral lobes, shorter (tr.) ocular ridges, and more developed posterolateral projections. Additionally, pleural spines of M. deprati are more curved and its pleural lobe is pronouncedly wider (tr.) than axial lobe.
description: Published as part of Zhao, Wenyu, Liu, Jianni & Bicknell, Russell D. C., 2020, Geometric morphometric assessment of Guanshan trilobites (Yunnan Province, China) reveals a limited diversity of palaeolenid taxa, pp. 1-15 in Palaeontologia Electronica (a 22) (a 22) 23 (2) on pages 10-11, DOI: 10.26879/1062, http://zenodo.org/record/10961770
Many-body effects in a composite bosonic Josephson junction
Creators: name: Haldar, Sudip Kumar
name: Bhowmik, Anal
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: In standard bosonic Josephson junctions (BJJs), particles tunnel between two single-well potentials linked by a finite barrier. The dynamics of standard BJJs have been extensively studied, both at the many-body and mean-field levels of theory. In the present work, we introduce the concept of a composite BJJ. In a composite BJJ, particles tunnel between two double-well potentials linked by a finite potential barrier between them. We focus on many-body facets of quantum dynamics and investigate how the complex structure of the junction influences tunneling. Employing the multiconfigurational time-dependent Hartree for bosons method, highly-accurate many-boson wave-functions are obtained from which properties are computed. We analyze the dynamics using the survival probability, the degree of fragmentation of the junction, and the fluctuations of observables, and discuss how many-boson tunneling behaves, and how it may be controlled, using the composite nature of the junction. A central result of this work relates to the degree of fragmentation of composite BJJs with different numbers of bosons. We provide strong evidence that a universal degree of fragmentation into multiple time-dependent modes takes place. Further applications are briefly discussed.
Additional file 1: of The effects and determinants of exercise participation in first-episode psychosis: a qualitative study
Creators: name: Firth, Joseph
name: Carney, Rebekah
name: Jerome, Lauren
name: Elliott, Rebecca
name: French, Paul
name: Yung, Alison
Publisher: name: Figshare
Year: 2016
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Gym Training Guide used for IBEEP. (PDF 355 kb)
Additional file 1: of Genetic variants in the upstream region of activin receptor IIA are associated with female fertility in Japanese Black cattle
Creators: name: Sasaki, Shinji
name: Ibi, Takayuki
name: Tamako Matsuhashi
name: Takeda, Kenji
name: Ikeda, Shogo
name: Sugimoto, Mayumi
name: Sugimoto, Yoshikazu
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology

description: Distribution of ANAI 4 in 10,399 cows in this study. (PDF 31Â kb)
Macropsidius duuschulus Dlabola 1965
Creators: name: Yang, Liyuan
name: Zhang, Yalin
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Cicadellidae
Macropsidius
Macropsidius duuschulus

description: Macropsidius duuschulus Dlabola, 1965 n. rec. to China
(Figs. 1–8, 17–22)
Macropsidius duuschulus Dlabola, 1965: 96.
Macropsidius albinervis Vilbaste, 1965: 32. Synonymy by Tishetshkin, 2007: 174. Macropsidius rigidus Mitjaev, 1971: 88. Synonymy by Tishetshkin, 2007: 174. Macropsis wangi (Li et Xu, 2005): 579 syn. n.
Material examined. 2♂♂, China: Qinghai Province, Xining, Kumbum Monastery, 14 August 2012, coll. Xue Qingquan (NWAFU); 5♂♂4♀♀, China: Ningxia Province, Liupan Mountain, 1760m, 27 June 2008, coll. Lu Lin (NWAFU); 1♂, China: Ningxia Province, Liupan Mountain, 2070m, 1 July 2008, coll. Lu Lin (NWAFU).
Distribution. China: Qinghai, Ningxia; Kazakhstan; Russia: Altai Mts., Southern Tuva, South-Eastern Transbaikalia; Mongolia.
Remarks. Comparison of specimens matching the descriptions of Macropsis wangi and M. duuschulus indicates that they belong to the same species. M. wangi apparently is a junior synonym of M. duuschulus judging by the shape of penis, the pygofer spine and the color pattern of the face.
description: Published as part of Yang, Liyuan & Zhang, Yalin, 2015, New records and synonymy in the genus Macropsidius (Hemiptera, Cicadellidae, Macropsinae) from China and description of a new Pediopsis species, pp. 487-492 in Zootaxa 4021 (3) on pages 487-488, DOI: 10.11646/zootaxa.4021.3.9, http://zenodo.org/record/238651
Dikraneura Hardy 1850
Creators: name: Borodin, Oleg
name: Borodina, Olga
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Cicadellidae
Dikraneura

description: Dikraneura Hardy, 1850
  Dikraneura variata Hardy, 1850 –  [Velce, 1968; Nast, 1972; Velce, 1972; Vilbaste, 1974; Nast, 1987; Spuris, 1996b; Ануфриев, Кириллова, 1998; Söderman, Gillerfors, Endrestol, 2009].
description: Published as part of Borodin, Oleg & Borodina, Olga, 2021, Fulgoromorpha & Cicadomorpha (Hemiptera) Of Latvia. Current State Of Study, pp. 155-184 in Acta Biologica Universitatis Daugavpiliensis 21 (2) on page 166, DOI: 10.5281/zenodo.12645231
Small but Mighty: Enhancing 3D Point Clouds Semantic Segmentation with U-Next Framework
Creators: name: Zeng, Ziyin
name: Hu, Qingyong
name: Xie, Zhong
name: Zhou, Jian
name: Xu, Yongyang
Publisher: name: arXiv
Year: 2023
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: We study the problem of semantic segmentation of large-scale 3D point clouds. In recent years, significant research efforts have been directed toward local feature aggregation, improved loss functions and sampling strategies. While the fundamental framework of point cloud semantic segmentation has been largely overlooked, with most existing approaches rely on the U-Net architecture by default. In this paper, we propose U-Next, a small but mighty framework designed for point cloud semantic segmentation. The key to this framework is to learn multi-scale hierarchical representations from semantically similar feature maps. Specifically, we build our U-Next by stacking multiple U-Net $L^1$ codecs in a nested and densely arranged manner to minimize the semantic gap, while simultaneously fusing the feature maps across scales to effectively recover the fine-grained details. We also devised a multi-level deep supervision mechanism to further smooth gradient propagation and facilitate network optimization. Extensive experiments conducted on three large-scale benchmarks including S3DIS, Toronto3D, and SensatUrban demonstrate the superiority and the effectiveness of the proposed U-Next architecture. Our U-Next architecture shows consistent and visible performance improvements across different tasks and baseline models, indicating its great potential to serve as a general framework for future research.
Words are vectors, dependencies are matrices: Learning word embeddings from dependency graphs
Creators: name: Czarnowska, P
name: Emerson, G
name: Copestake, A
Publisher: name: Association for Computational Linguistics
Year: 2019

description: Distributional Semantic Models (DSMs) construct vector representations of word meanings based on their contexts. Typically, the contexts of a word are defined as its closest neighbours, but they can also be retrieved from its syntactic dependency relations. In this work, we propose a new dependency-based DSM. The novelty of our model lies in associating an independent meaning representation, a matrix, with each dependency-label. This allows it to capture specifics of the relations between words and contexts, leading to good performance on both intrinsic and extrinsic evaluation tasks. In addition to that, our model has an inherent ability to represent dependency chains as products of matrices which provides a straightforward way of handling further contexts of a word.
HST-MRF: Heterogeneous Swin Transformer with Multi-Receptive Field for Medical Image Segmentation
Creators: name: Huang, Xiaofei
name: Gong, Hongfang
name: Zhang, Jin
Publisher: name: arXiv
Year: 2023
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: The Transformer has been successfully used in medical image segmentation due to its excellent long-range modeling capabilities. However, patch segmentation is necessary when building a Transformer class model. This process may disrupt the tissue structure in medical images, resulting in the loss of relevant information. In this study, we proposed a Heterogeneous Swin Transformer with Multi-Receptive Field (HST-MRF) model based on U-shaped networks for medical image segmentation. The main purpose is to solve the problem of loss of structural information caused by patch segmentation using transformer by fusing patch information under different receptive fields. The heterogeneous Swin Transformer (HST) is the core module, which achieves the interaction of multi-receptive field patch information through heterogeneous attention and passes it to the next stage for progressive learning. We also designed a two-stage fusion module, multimodal bilinear pooling (MBP), to assist HST in further fusing multi-receptive field information and combining low-level and high-level semantic information for accurate localization of lesion regions. In addition, we developed adaptive patch embedding (APE) and soft channel attention (SCA) modules to retain more valuable information when acquiring patch embedding and filtering channel features, respectively, thereby improving model segmentation quality. We evaluated HST-MRF on multiple datasets for polyp and skin lesion segmentation tasks. Experimental results show that our proposed method outperforms state-of-the-art models and can achieve superior performance. Furthermore, we verified the effectiveness of each module and the benefits of multi-receptive field segmentation in reducing the loss of structural information through ablation experiments.
Macropsidius niger Matsumura 1915
Creators: name: Yang, Liyuan
name: Zhang, Yalin
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Cicadellidae
Macropsidius
Macropsidius niger

description: Macropsidius niger Matsumura, 1915 n. rec. to China
(Figs. 9–16, 23–28)
Agallia nigra Matsumura, 1915: 172.
Material examined. 2♂♂, China: Shanxi Province, Yuncheng, Xia County, 23 July 2012, coll. Yang Liyuan (NWAFU); 1♂ 3♀♀, China: Qinghai Province, Mengda, Tianchi, 2107m, 8 August 2012, coll. Lu Lin (NWAFU).
Distribution. China: Shanxi, Qinghai; Southern Siberia; Southern Russian Far East; Northern Mongolia; Korea.
description: Published as part of Yang, Liyuan & Zhang, Yalin, 2015, New records and synonymy in the genus Macropsidius (Hemiptera, Cicadellidae, Macropsinae) from China and description of a new Pediopsis species, pp. 487-492 in Zootaxa 4021 (3) on page 488, DOI: 10.11646/zootaxa.4021.3.9, http://zenodo.org/record/238651
Multistability and Intermediate Tipping of the Atlantic Ocean Circulation
Creators: name: Lohmann, Johannes
name: Dijkstra, Henk A.
name: Jochum, Markus
name: Lucarini, Valerio
name: Ditlevsen, Peter D.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Atmospheric and Oceanic Physics (physics.ao-ph)
subject: Chaotic Dynamics (nlin.CD)
subject: FOS: Physical sciences

description: Tipping points (TP) in climate sub-systems are usually thought to occur at a well-defined, critical forcing parameter threshold, via destabilization of the system state by a single, dominant positive feedback. However, coupling to other sub-systems, additional feedbacks, and spatial heterogeneity may promote further small-amplitude, abrupt reorganizations of geophysical flows at forcing levels lower than the critical threshold. Using a primitive-equation ocean model we simulate a collapse of the Atlantic Meridional Overturning Circulation (AMOC) due to increasing glacial melt. Considerably prior to the collapse, various abrupt, qualitative changes in AMOC variability occur. These intermediate tipping points (ITP) are transitions between multiple stable circulation states. Using 2.75 million years of model simulations, we uncover a very rugged stability landscape featuring parameter regions of up to nine coexisting stable states. The path to an AMOC collapse via a sequence of ITPs depends on the rate of change of the meltwater input. This challenges our ability to predict and define safe limits for TPs.