cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Qualtrics Survey Template
Creators: name: Hartwig, Maria
name: Luke, Timothy J.
name: Krishnani, Nikhil
Publisher: name: OSF Registries
Year: 2016

description: Included here is a duplicate of the basic structure of the Qualtrics survey used for this study. The original survey contained links to the interview videos, and in order to ensure confidentiality of the people in the videos, these links cannot be distributed publicly.
Additional file 1 of Impact of end-of-life respiratory modalities on quality of dying and death and symptom relief in patients with interstitial lung disease: a multicenter descriptive cross-sectional study
Creators: name: Koyauchi, Takafumi
name: Suzuki, Yuzo
name: Sato, Kazuki
name: Hozumi, Hironao
name: Karayama, Masato
name: Furuhashi, Kazuki
name: Fujisawa, Tomoyuki
name: Enomoto, Noriyuki
name: Nakamura, Yutaro
name: Inui, Naoki
name: Yokomura, Koshi
name: Imokawa, Shiro
name: Nakamura, Hidenori
name: Morita, Tatsuya
name: Suda, Takafumi
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Cell Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy

description: Additional file 1: Table S1. Good Death Inventory (GDI). Table S2. Patients’ characteristics and medical interventions of patients with or without questionnaire response. Table S3. Patients’ characteristics, medical interventions, and bereaved family characteristics in QODD analysis population. Table S4. Good Death Inventory domain scores for quality of dying and death among patients with ILD.
ECAS4 trail for decolonization of MRSA ST398 and microbiota in pigs and farm environment
Creators: name: Trott, Darren
name: Kirkwood, Roy
name: Sangay Tenzin
Publisher: name: The University of Adelaide
Year: 2017
Subjects: subject: 70707 Veterinary Microbiology (excl. Virology)
subject: FOS: Veterinary sciences

description: Microbial MIC data, Metagenomics data and statistical
Additional file 2 of Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance
Creators: name: Salamzade, Rauf
name: Manson, Abigail L.
name: Walker, Bruce J.
name: Brennan-Krohn, Thea
name: Worby, Colin J.
name: Ma, Peijun
name: He, Lorrie L.
name: Shea, Terrance P.
name: Qu, James
name: Chapman, Sinéad B.
name: Howe, Whitney
name: Young, Sarah K.
name: Wurster, Jenna I.
name: Delaney, Mary L.
name: Kanjilal, Sanjat
name: Onderdonk, Andrew B.
name: Bittencourt, Cassiana E.
name: Gussin, Gabrielle M.
name: Kim, Diane
name: Peterson, Ellena M.
name: Ferraro, Mary Jane
name: Hooper, David C.
name: Shenoy, Erica S.
name: Cuomo, Christina A.
name: Cosimi, Lisa A.
name: Huang, Susan S.
name: Kirby, James E.
name: Pierce, Virginia M.
name: Bhattacharyya, Roby P.
name: Earl, Ashlee M.
Publisher: name: figshare
Year: 2022
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: Additional file 2: Fig. S1. Method for the delineation of segments shared between plasmids. Fig. S2. Workflow to identify geographic signatures. Fig. S3. Phylogenetic tree for each of the 15 species in our collection with at least five representatives. Fig. S4. Resistance mechanisms were diverse, with many shared across species. Fig. S5. Carbapenemase-carrying isolates tended to have a higher minimum inhibitory concentration than those with other resistance mechanisms. Fig. S6. High level of diversity and phylogenetic range among predicted plasmids. Fig. S7. Plasmids of diverse groups carried carbapenemases and were found in different species, and hospitals. Fig. S8. Limited tracing of carbapenemase localized spread using Tn4401 isoforms and their immediate flanking sequences. Fig. S9. Signatures were present across diverse sequence types. Fig. S10. Signatures carried genes important for hospital adaptation and signature mobility. Fig. S11. Details of signature content. Fig. S12. Signatures were highly conserved and likely derived from a common ancestral sequence. Fig. S13. Geographic signatures with blaKPC can occur in multiple configurations across several species and plasmid groups. Fig. S14. Geographic signatures with blaKPC occurred in multiple configurations across several species and plasmid groups.
Additional file 3 of Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance
Creators: name: Salamzade, Rauf
name: Manson, Abigail L.
name: Walker, Bruce J.
name: Brennan-Krohn, Thea
name: Worby, Colin J.
name: Ma, Peijun
name: He, Lorrie L.
name: Shea, Terrance P.
name: Qu, James
name: Chapman, Sinéad B.
name: Howe, Whitney
name: Young, Sarah K.
name: Wurster, Jenna I.
name: Delaney, Mary L.
name: Kanjilal, Sanjat
name: Onderdonk, Andrew B.
name: Bittencourt, Cassiana E.
name: Gussin, Gabrielle M.
name: Kim, Diane
name: Peterson, Ellena M.
name: Ferraro, Mary Jane
name: Hooper, David C.
name: Shenoy, Erica S.
name: Cuomo, Christina A.
name: Cosimi, Lisa A.
name: Huang, Susan S.
name: Kirby, James E.
name: Pierce, Virginia M.
name: Bhattacharyya, Roby P.
name: Earl, Ashlee M.
Publisher: name: figshare
Year: 2022
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: Additional file 3. Supplementary Results.
Additional file 1 of Experiences of dementia and attitude towards prevention: a qualitative study among older adults participating in a prevention trial
Creators: name: Rosenberg, Anna
name: Coley, Nicola
name: Soulier, Alexandra
name: Kulmala, Jenni
name: Soininen, Hilkka
name: Andrieu, Sandrine
name: Kivipelto, Miia
name: Barbera, Mariagnese
Publisher: name: figshare
Year: 2020
Subjects: subject: Neuroscience
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Mental Health

description: Additional file 1: Table S1. COREQ checklist Table S2. Demographics of the Finnish interviewees, all Finnish ACCEPT-HATICE participants, Finnish HATICE participants, and all HATICE participants.
Additional file 2 of Downregulation of KRAB zinc finger proteins in 5-fluorouracil resistant colorectal cancer cells
Creators: name: Chauvin, Anaïs
name: Bergeron, Danny
name: Vencic, Jean
name: Lévesque, Dominique
name: Paquette, Benoit
name: Scott, Michelle S.
name: Boisvert, François-Michel
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2.
Additional file 3 of Downregulation of KRAB zinc finger proteins in 5-fluorouracil resistant colorectal cancer cells
Creators: name: Chauvin, Anaïs
name: Bergeron, Danny
name: Vencic, Jean
name: Lévesque, Dominique
name: Paquette, Benoit
name: Scott, Michelle S.
name: Boisvert, François-Michel
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3.
Additional file 4 of Downregulation of KRAB zinc finger proteins in 5-fluorouracil resistant colorectal cancer cells
Creators: name: Chauvin, Anaïs
name: Bergeron, Danny
name: Vencic, Jean
name: Lévesque, Dominique
name: Paquette, Benoit
name: Scott, Michelle S.
name: Boisvert, François-Michel
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 4.
Additional file 9 of Assessment of bidirectional relationships between 98 genera of the human gut microbiota and amyotrophic lateral sclerosis: a 2-sample Mendelian randomization study
Creators: name: Zhang, Linjing
name: Zhuang, Zhenhuang
name: Zhang, Gan
name: Huang, Tao
name: Fan, Dongsheng
Publisher: name: figshare
Year: 2022
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Ecology
subject: Biological Sciences not elsewhere classified

description: Additional file 9: eFigure 4. Association of genetically predicted amyotrophic lateral sclerosis with Lactobacillalesorder. Squares represent the effect estimates of the relative abundance ofLactobacillalesorderper 1-unit higher log odds of amyotrophic lateral sclerosis; horizontal lines represent 95% confidence intervals (CIs); diamond represent the effect size with its 95% CI.
Additional file 1: of The dynamic monitoring of CEA in response to chemotherapy and prognosis of mCRC patients
Creators: name: Yu, Ping
name: Zhou, Mingyi
name: Qu, Jinglei
name: Fu, Lingyu
name: Li, Xuedan
name: Cai, Ruimei
name: Jin, Bo
name: Teng, Yuee
name: Liu, Jing
name: Shi, Jing
name: Zhang, Jingdong
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Table S1. Characterization of patients. Table S2. Univariate and multivariate analysis of overall survival and progression-free survival. (DOCX 18 kb)
Queensland University of Technology: getting the big picture on research influence with Altmetric Explorer
Creators: name: Altmetric Engineering
Publisher: name: Altmetric
Year: 2020
Subjects: subject: 80705 Informetrics
subject: FOS: Media and communications

description: Queensland University of Technology (QUT) is a major Australian university with a global outlook. Its research strengths are reflected in ten dedicated centres specialising in areas from robotics to healthcare transformation.
 One of QUT’s key aspirations is to lead in open science and open scholarship; it seeks to maximise knowledge-sharing, locally and globally. In July 2020 its public-facing, open- access repository achieved the milestone of over 30 million downloads.
Additional file 1 of Olfactory receptor 78 is expressed in hypothalamic vasopressin/oxytocin neurons, parenchymal microglia and choroidal macrophages in mice
Creators: name: Nakashima, Akiko
name: Nakashima, Noriyuki
name: Nakashima, Kie
name: Takano, Makoto
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. Supplementary methods and figures.
Additional file 1 of Changes in leukocytes and CRP in different stages of major depression
Creators: name: Singh, Deepti
name: Guest, Paul C.
name: Dobrowolny, Henrik
name: Vasilevska, Veronika
name: Meyer-Lotz, Gabriela
name: Bernstein, Hans-Gert
name: Borucki, Katrin
name: Neyazi, Alexandra
name: Bogerts, Bernhard
name: Jacobs, Roland
name: Steiner, Johann
Publisher: name: figshare
Year: 2022
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 1: Table S1. Treatment status of patients. Table S2. Demographic, clinical and lab data of patients with atypical MD (Yes) versus typical MD patients (No). Table S3. Association of improvement in depressive symptoms (ΔHAMD-21 or ΔGAF) with changes in WBC and CRP from baseline to T6. Table S4. Demographic, clinical and lab data of non-smoking patients and controls. Table S5. Spearman correlation matrix between cortisol and WBC counts or clinical scores. p-values are FDR-corrected in each column. Table S6. Previous studies on WBC in patients with major depression. Table S7. Pattern of WBC counts and CRP alterations in major depression (present study) and schizophrenia (past study: Steiner et al. [12]).
Additional file 1 of Betahistine alleviates benign paroxysmal positional vertigo (BPPV) through inducing production of multiple CTRP family members and activating the ERK1/2-AKT/PPARy pathway
Creators: name: Hui, Jing
name: Lei, Qi
name: Ji, Zhi
name: Zi, Dingjing
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: Neuroscience
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Table S1. DHI Questionnaire.
Additional file 1 of DeepLPI: a multimodal deep learning method for predicting the interactions between lncRNAs and protein isoforms
Creators: name: Shaw, Dipan
name: Chen, Hao
name: Xie, Minzhu
name: Jiang, Tao
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. Supplementary Materials
Additional file 2 of Betahistine alleviates benign paroxysmal positional vertigo (BPPV) through inducing production of multiple CTRP family members and activating the ERK1/2-AKT/PPARy pathway
Creators: name: Hui, Jing
name: Lei, Qi
name: Ji, Zhi
name: Zi, Dingjing
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: Neuroscience
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2: Figure S1. The clinical effect of Betahistine on BPPV and the expression of CTRP2, 4, 5, 7, 10, 11, 13, 15 and adiponectin. BPPV patients were treated with Betahistine (12 mg/time, 3 times/day) for 4 weeks, and blood was collected and serum was separated. The expression of CTRP2 (A), CTRP4 (B), CTRP5 (C), CTRP7 (D), CTRP10 (E), CTRP11 (F), CTRP13 (G), CTRP15 (H), and adiponectin (I) in serum was detected by using ELISA. N=5, statistical differences were performed by using the Student’s t-test. Compared with BPPV patient, *P < 0.05, **P <0.01. Figure S2. Betahistine reduces vestibular dysfunction through inducing the expression of CTRP family members and activating the ERK1/2-AKT/PPARγ pathway in mice. Fifty-six mice were randomly divided into four groups and treated with normal saline, gentamicin, gentamicin + Betahistine, gentamicin + Betahistine + GW9662, respectively. Then, the mRNA levels of CTRP1 (A) and CTRP12 (B) were detected with RT-qPCR. We also evaluated the accuracy of air righting reflex (C), the time of contact righting reflex (D) and the scores of head tilt and swimming behavior (E) in mice. N=7, Statistical differences were performed by using a one-way ANOVA. *P < 0.05, **P <0.01.
Central IRB Approval Letter for the National Covid Cohort Collaborative (N3C)
Creators: name: N3C Consortium
Publisher: name: Zenodo
Year: 2020
Subjects: IRB
N3C
Central IRB
Governance
SmartIRB

description: The National COVID Cohort Collaborative (N3C) opted to submit a single IRB at one of the organizing sites (Johns Hopkins University) to minimize the burden of participation for each site contributing clinical data to the N3C Secure Data Enclave. The N3C community collaboratively contributed to the core protocol. However, respecting site autonomy, the central IRB was not required; each site could opt to submit the core protocol to their own local IRB. For more information about N3C visit covid.cd2h.org
Supplemental information on scRNA-seq data. Yazicioglu et al. 2020 AJP Lung
Creators: name: Yazicioglu, Tolga
name: Mühlfeld, Christian
name: Autilio, Chiara
name: Huang, Cheng-Kai
name: Bär, Christian
name: Dittrich-Breiholz, Oliver
name: Thum, Thomas
name: Perez-Gil, Jesus
name: Schmiedl, Andreas
name: Brandenberger, Christina
Publisher: name: figshare
Year: 2020
Subjects: subject: 111601 Cell Physiology
subject: FOS: Basic medicine
subject: 110203 Respiratory Diseases
subject: FOS: Clinical medicine

description: Supplemental file 1: Global comparison analysis in AE2 of all four exposure groups performed in Loupe browser; showing average and log2-fold expression as well as corresponding p-values for each exposure group

Supplemental file 2: Comparison analysis between young control and young 24 h LPS AE2 gene expression performed in Loupe browser; showing average and log2-fold expression in both experimental groups and corresponding p-values (<0.05)
Supplemental file 3: Comparison analysis between old control and old 24 h LPS AE2 gene expression performed in Loupe browser; showing average and log2-fold expression in both experimental groups and corresponding p-values (<0.05)
Supplemental file 4: Comparison analysis between young control and old control AE2 gene expression performed in Loupe browser; showing average and log2-fold expression of both experimental groups and corresponding p-values (<0.05)
Supplemental file 5: Comparison analysis between young 24 h LPS and old 24 h LPS AE2 gene expression performed in Loupe browser; showing average and log2-fold expression in both experimental groups and corresponding p-values (<0.05)
Supplemental figure 1: Different assigned cell populations within scRNA-seq analysis of isolated, EpCAM positive lung

Supplemental figure 2: Heat-map and expression profiles of selected genes (Cdnk1a and Trp53) in AE2 of second data set
Supplemental figure 3: Expression profile of H2afx (yH2AX) in AE2 of all experimental groups
Instance-based Label Smoothing for Better Classifier Calibration
Creators: name: Maher, Mohamed
Publisher: name: figshare
Year: 2020
Subjects: subject: 170203 Knowledge Representation and Machine Learning
subject: FOS: Psychology
subject: Theoretical Computer Science
subject: Artificial Intelligence and Image Processing
subject: FOS: Computer and information sciences

description: Binary classification is one of the fundamental tasks in machine learning, which involves assigning one of two classes to an instance defined by a set of features. Although accurate predictions are essential in most of the tasks, knowing the model confidence is indispensable in many of them. Many probabilistic classifiers' predictions are not well-calibrated and tend to be overconfident, requiring further calibration as a post-processing step to the model training.
Logistic calibration is one of the most popular calibration methods, that fits a logistic regression model to map the outputs of a classification model into calibrated class probabilities. Various regularization methods could be applied to logistic regression fitting to reduce its overfitting on the training set. Platt scaling is one of these methods, which applies label smoothing to the class labels and transforms them into target probabilities before fitting the model to reduce its overconfidence. Also, label smoothing is widely used in classification neural networks. In previous works, it was shown that label smoothing has a positive calibration and generalization effect on the network predictions. However, it erases information about the similarity structure of the classes by treating all incorrect classes as equally probable, which impairs the distillation performance of the network model.
In this thesis, we aim to find better ways of reducing overconfidence in logistic regression. Here we derive the formula of a Bayesian approach for the optimal predicted probabilities in case of knowing the generative model distribution of the dataset. Later, this formula is approximated by a sampling approach to be applied practically. Additionally, we propose a new instance-based label smoothing method for logistic regression fitting. This method motivated us to present a novel label smoothing approach that enhanced the distillation and calibration performance of neural networks compared with standard label smoothing.
The evaluation experiments confirmed that the approximated formula for the derived optimal predictions is significantly outperforming all other regularization methods on synthetic datasets of known generative model distribution. However, in more realistic scenarios when this distribution is unknown, our proposed instance-based label smoothing had a better performance than Platt scaling in most of the synthetic and real-world datasets in terms of log loss and calibration error. Besides, neural networks trained with instance-based label smoothing, outperformed the standard label smoothing regarding log loss, calibration error, and network distillation.
Ambassador Webinar Slides
Creators: name: Bernal Llinares, Manuel
name: Lambert, Simon
name: Madden, Frances
Publisher: name: Zenodo
Year: 2020
Subjects: PIDs
persistent identifiers
research facilities

description: Slides from the FREYA Ambassador webinar which took place on 25 March 2020. The topics included two of the pilot applications PIDs for Facilities at STFC and JSON-LD metadata at identifiers.org.
Additional file 1 of Impact of a pandemic on surgical neuro-oncology—maintaining functionality in the early phase of crisis
Creators: name: Hameed, N. U. Farrukh
name: Ma, Yixin
name: Zhen, Zili
name: Wu, Shuai
name: Feng, Rui
name: Li, Weiping
name: Huang, Guodong
name: Wu, Jinsong
name: Chen, Zhongping
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Neuroscience
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: Mental Health

description: Additional file 1. Supplementary File.
Additional file 1 of Diagnostic value of mid-regional pro-Adrenomedullin as a biomarker of invasive bacterial infection in children: a systematic review
Creators: name: Corr, Michael Paul
name: Fairley, Derek
name: McKenna, James P.
name: Shields, Michael D.
name: Waterfield, Thomas
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Science Policy
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Computational Biology

description: Additional file 1.
title: Investigating the genomic basis of antimicrobial resistance in Mycobacterium tuberculosis (Mtb) using genome-wide methodologies
Creators: name: Oppong, YEA
Publisher: name: London School of Hygiene & Tropical Medicine
Year: 2020

description: Characterizing the drug resistance mutations that have evolved in Mycobacterium tuberculosis (Mtb), has important implications for control of tuberculosis (TB) disease, through more accurate and timely use of therapy. Whole genome sequencing of Mtb can assist this characterization by providing insights into loci and specific mutations underlying drug resistance and the transmission success that enables their spread. We hypothesised that genetic variation outside of known resistance-conferring mutations might give additional information concerning drug resistance and fitness. Firstly, we explored the effect of lineage on the identification of drug resistance associations, applying novel lineage level genome-wide association study (GWAS) and convergence-based (PhyC) methods to drug resistance phenotypes of a global dataset of Mtb lineages 2 and 4. We identified known drug resistance variants and novel associations, uniquely identifying associations for lineage-specific GWAS analyses and reporting 17 novel associations between antimicrobial resistance phenotypes and Mtb genomic variants, demonstrating the utility of lineage-specific GWAS. To further examine the genomic basis of extensively drug resistant (XDR)-TB, we next applied the GWAS and PhyC techniques to a global dataset of 18,255 Mtb isolates. Through GWAS we identified 20 loci in novel associations within highly drug-resistant Mtb strains. Cluster-based GWAS and a lack of overlap with associations identified through convergent-evolution-based analyses confirmed that many such associations have been driven by transmission in outbreaks of XDR-TB. We then investigated the feasibility of applying a learning classifier system to this dataset to predict rifampicin resistance and discover candidate loci for novel involvement, finally enabling a sensitivity of 93.7% and a specificity of 94.8% of rifampicin resistance prediction. Finally, we applied this methodology to the XDR phenotype in lineages 2 and 4 of a global dataset (n=13,270), achieving high accuracy of prediction and identifying a number of candidate loci for involvement in XDR, including candidates for epistasis.
MPEC 2024-L100 : 2024 LO2
Creators: name: Minor Planet Center Staff
Publisher: name: The Minor Planet Center
Year: 2024
Subjects: subject: Small Solar System bodies
valueUri: http://astrothesaurus.org/uat/1469
subject: 2024 LO2

description: The Minor Planet Electronic Circulars contain information on unusual minor planets, routine data on comets and natural satellites, and occasional editorial announcements.  They are published on behalf of Division F of the International Astronomical Union by the Minor Planet Center, Smithsonian Astrophysical Observatory, Cambridge, MA 02138, U.S.A.
Specific problem
Creators: name: Bishop, Tarun Edward
Publisher: name: OSF Registries
Year: 2019

description: Animal advocacy groups have a unique opportunity in 2019 to be involved in the effective implementation of a new California law, SB 1138, which requires licensed health facilities and prisons to make plant- based meals available to patients and inmates. i Successful advocacy will require specialized knowledge on many fronts.  For example, advocates will need to know: what institutional barriers exist to identifying people with special diets and ensuring the diets are ordered and provided; what training nutritionists may need to design plant-based meals that meet the nutritional needs and appetites of patients, especially those with health issues (e.g., diabetes, heart conditions), and also appeal to all patients; and how to get involved with the state regulatory and enforcement agencies responsible for enforcing SB 1138.  
 The potential impact of advocacy in this area is great. Numbers of individuals in licensed health care facilities will increase, as the U.S. population of adults over age 65 increases to a projected 55 million by 2020.ii In 2012, skilled nursing facilities alone served 1.4 million residents in the U.S. iii
 Federal and state laws already have some requirements for assessment of patients’ dietary needs, and for provision of appropriate diets. iv  Yet health facilities still provide predominantly unhealthful foods.  In 2017 the American Medical Association adopted a policy, “Healthy Food Options in Hospitals,” which cites the need for improvement of hospital food including the need for plant-based options. v  In 2014, the Physicians’ Committee for Responsible Medicine found 20 percent of 208 hospitals surveyed housed fast food restaurants and that hospital cafeteria food was dominated by unhealthful foods such as processed meat. vi Overuse of animal products causes poor human health as well as harm to the environment. vii
Data Management Plan in RSpace: 'One tool less' to simplify research workflow
Creators: name: Lama, Soni
name: Bennewitz, Roland
Publisher: name: Zenodo
Year: 2025
Subjects: subject: data management plan
subject: electronic lab notebook
subject: Materials Science

description: The effective management of research data begins with creating a data management plan (DMP) for each research project which describes how the research data is handled throughout the research life cycle. However, the importance of proper handling of research data is not realized among researchers as research data management (RDM) is not embedded in their everyday practice. Researchers often get overwhelmed by any additional tools or infrastructure introduced to their research workflows. Therefore, to streamline the research process, we propose a “one less tool” strategy, integrating DMP template into our electronic laboratory notebook (ELN) “RSpace” which helps researchers use existing institutional services and infrastructure instead of adopting an additional platform for creating DMP. This strategy ensures that researchers can focus more on their work while maintaining efficiency in data management. Currently, we are in a trail phase to evaluate the effectiveness of this integration. We assume that researchers are more likely to create their DMPs when the process is integrated in their ELN, reducing the need for an extra effort.
Synthesis writing in upper-secondary education: From a baseline of texts and processes to process-oriented feedback
Creators: name: Vandermeulen, Nina
Publisher: name: Zenodo
Year: 2020
Subjects: synthesis writing
keystroke logging
writing research
writing education
national baseline
writing process
feedback
process feedback

description: It is important that upper-secondary students develop their synthesis writing proficiency as synthesis writing is a common activity in higher education. Independently of the field of study, all students will write multiple synthesis texts during their academic career. Writing synthesis texts -texts which integrate information from different sources- is challenging, given the cognitively demanding nature of this task. The process of source-based writing involves a complex interplay of reading and writing sub‑processes. This dissertation is structured around three research lines: (1) a national baseline study, (2) process‑product relations, and (3) process-oriented feedback. It outlines the path from baseline, over writing process-product relations, to process‑oriented feedback. The focus strongly lies on synthesis writing processes, using keystroke logging tool Inputlog. The first research line aims to provide a state‑of‑the‑art on synthesis writing in Dutch upper-secondary education and a baseline for future research. It consists of a national survey on synthesis writing on three dimensions: writing performance, writing processes and writing perspectives. The second research line aims at exploring the relation between the writing process and the quality of the text. This research line consists of two sub-goals. First, we focused on source use during the process and identified effective patterns of source use for both argumentative and informative synthesis texts. Secondly, we formed writing process profiles as we examined configurations of synthesis writing activities across different phases of the writing process and their relation to text quality. The third and final research line focuses on process‑oriented feedback. We aimed at creating an Inputlog process report that would facilitate the use of keystroke logging in the classroom. Moreover, we aimed to develop process-oriented feedback, including a keystroke logging process report and benchmark processes, to improve upper-secondary students’ synthesis writing. The feedback was embedded into a flow that stimulates reflection and self-regulated learning. In an intervention study we tested the effect of the feedback on the students' writing performance and their writing process. The study showed the potential of the process-oriented feedback.
We want to do better, so do you? Let's share our experiences on RDM workshops!
Creators: name: Boße, Sophie
name: Rey Mazón, Elena
Publisher: name: Zenodo
Year: 2025
Subjects: RDM Training

description: As the National Research Data Infrastructure (NFDI) consortium for agrosystem science - FAIRagro - we want to support the cultural change within our community towards a comprehensive and FAIR research data management. To this end, we have conducted 23 online and face-to-face training events with various partners, reaching a total of 575 participants. Over the last two years, we have learned a lot about how to (how not to) run a successful training event. With this poster, we want to share our experiences with you - and learn from you. So, what are your tips and tricks for running an RDM training?
Additional file 2 of A novel food-based negative oral contrast agent compared with two conventional oral contrast agents in abdominal CT: a three-arm parallel blinded randomised controlled single-centre trial
Creators: name: Leander, Peter
name: Stathis, Georgios
name: Casal-Dujat, Lucia
name: Boman, Karolina
name: Adnerhill, Ingvar
name: Marsal, Jan
name: Böök, Olof
name: Fork, Thomas
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 2: Table S1-4. Supplementary tables showing demographics and medical history of the patients studied.
pH in Lake Santo Parmense (1991)
Creators: name: [Unknown]
Publisher: name: FZ-Juelich B2SHARE
Year: 2020

description: Dataset provides pH measured in Lake Santo Parmense in 1991. Water samples were collected by means of a Ruttner bottle at different depths over the whole water column at the point of maximum depth of the lake. pH was measured by means of a pH meter.
Оценка ущерба от деградации почв и земель субъектов Российской Федерации
Creators: name: Л. С. ЩЕРБАКОВА
name: В. С. КРАСИЛЬНИКОВА
name: Д. Р. АБДУЛХАНОВА
name: Е. В. ЦВЕТНОВ
name: А. С. СТРОКОВ
name: О. А. МАКАРОВ
Publisher: name: Земледелие
Year: 2020
Subjects: деградация почв и земель
загрязнение почв
ущерб
рекультивация земель
регионы Россий- ской Федерации

description: Исследования проводили с целью оценки ущерба, нанесенного процес- сами деградации почвы в двух регионах Центрального экономического района – Московской и Тульской областях. Расче- ты осуществляли с использованием фе- деральных нормативно-методических документов. Экологическое состояние почв и земель Московской области оце- нивали по загрязнению свинцом, цин- ком, медью, цезием-137 и деградации (эродированности почв, уменьшению запасов гумуса, содержания подвижно- го фосфора и калия, удельной площади земель, испытывающих значительные антропотехногенные нагрузки). Для оценки состояния почвенно-земельных ресурсов Тульской области были вы- браны пылевая нагрузка на терри- торию, радиоактивное загрязнение, эродированность почв и состояние биоценозов. Источником информации служили результаты анализа фондовых и статистических материалов, а также данные собственных исследований отдельных сельскохозяйственных предприятий и локальных участков. При оценке степени деградации и за- грязнения почв и земель использовали шкалы, опирающиеся на представления об устойчивости экосистем к внешней нагрузке, допустимых уровнях изме- нения качества окружающей среды в целом и ее отдельных компонентов. Общий ущерб для выделенных кон- туров деградации Тульской области составил 23,3 млрд руб. (9082 руб./ га), для Московской области – 999,4 млрд руб. (225208 руб./га). Выделение доминирующих показателей деграда- ции позволило определить основные направления и разновидности работ по улучшению состояния почв и земель в исследуемых регионах, среди которых оптимизация (рационализация) струк- туры землепользования, внесение не- обходимого количества минеральных и органических удобрений, детокси- кация локальных участков. При этом стоимость указанных работ должна, в целом, соответствовать определенной величине ущерба по конкретному по- казателю.
Почвозащитная эффективность сформированных культурами севооборота агрофонов в системе гидролесомелиорации на склонах Центрального Черноземья
Creators: name: В. А. ВЫТОВТОВ
name: Т. Я. ЗАРУДНАЯ
name: А. В. ПРУЩИК
name: С. А. ТАРАСОВ
Publisher: name: Земледелие
Year: 2020
Subjects: почвы на склонах
метеорологические условия
лесные по- лосы
гидротехнические сооружения
за- пасы воды в снеге
сток талых вод
водная эрозия почв.

description: Исследования проводили с целью оцен- ки влияния агрофонов, сформированных культурами севооборота, на проявление водно-эрозионных процессов в пределах водосборов с различной насыщенностью противоэрозионными элементами. В работе был проанализирован массив эксперимен- тальных данных, собранных в эксперименте по контурно-мелиоративному земледелию в Курской области в 1988–2018 гг. Схема опыта предусматривала изучение водо- сборов без противоэрозионных элемен- тов, с узкими лесополосами, усиленными канавами, и с лесополосами, канавами и валами-террасами. Почва эксперименталь- ного участка – выщелоченный и типичный чернозем с содержанием гумуса 4,9…6,8 %, крутизна склонов – от 0,1 до 8,0°, степень эродированности – 16,5…27,3 %. В зависи- мости от культуры севооборота снеготаяние протекало на фоне зяби, посевов озимой пшеницы или многолетних трав. В опыте определяли запасы воды в снеге, сток талых вод и смыв почвы. Из 31 года исследований 13 лет (42 %) отмечали сток талых вод, 11 лет (36 %) он сопровождался смывом почвы. Под озимой пшеницей величина стока была в 3,4 раза больше, чем на зяби, и в 5,2 раза больше, чем на посевах многолетних трав. Под многолетними травами смыв почвы от- сутствовал, однако под озимой пшеницей он был в 3,5 раза больше, чем на зяби. На зяби в течение 7 лет с проявлением эрозии было смыто 20,93 т/га почвы, под озимой пшени- цей за 4 года – 35,56 т/га почвы. На водо- сборах с почвозащитными элементами сток был меньше, чем без них, в 1,9…2,0 раза, а смыв почвы – в 2,9…3,1 раза. Установлена тесная корреляционная зависимость между количеством смываемой почвы и величиной стока. Полученные уравнения регрессии позволяют прогнозировать величину смыва почвы в зависимости от стока талых вод.
Защита почв от водной эрозии и дефляции в технологии No-till
Creators: name: Н. Р. ЕРМОЛАЕВ
name: С. А. ЛИХОДИЕВСКАЯ
name: Р. Г. ГАДЖИУМАРОВ
name: С. А. ЮДИН
name: С. А. АНТОНОВ
name: В. П. БЕЛОБРОВ
name: В. К. ДРИДИГЕР
Publisher: name: Земледелие
Year: 2020
Subjects: технология No-till
эрозия
растительные остатки
обработка почвы
чистые пары
очёс растений
гео- информационные технологии
мульти- спектральная съемка

description: Исследования проводили с целью ретроспективного анализа влияния рас- тительных остатков при использовании технологии No-till на развитие процессов линейной водной эрозии и дефляции почв. Работу осуществляли на основе результатов визуальных наблюдений и данных дистанционного зондирования Земли на больших производственных площадях пашни. Объекты исследо- ваний – сельскохозяйственные пред- приятия СПК «Архангельский» (площадь пашни 15675 га) и ООО «Добровольное» (7243 га), расположенные рядом в Будён- новском районе Ставропольского края. Оба хозяйства находятся в засушливой зоне со среднегодовым количеством осадков 402 мм. В СПК «Архангельский» с 2014 г. начали осваивать и в 2017 г. полностью перешли на систему зем- леделия без обработки почвы (No-till). В ООО «Добровольное» все эти годы использовали традиционную систему земледелия с отвальной вспашкой. В СПК «Архангельский» после уборки урожая на поверхности почвы ежегодно сохранялось в среднем 4 т/га раститель- ных остатков возделываемых культур. В сочетании с уборкой зерновых колосовых и льна масличного методом очёса и от- казом от чистого пара это обеспечивает надёжную защиту почвы от ветровой и водной эрозии. В результате протяжен- ность водотоков, затронутых процессами линейной водной эрозии, сократилась с 23 км в 2013 г. до 13 км в 2019 г. Эрозия почвы на полях хозяйства и эрозионно опасных участках понижения рельефа прекратилась, что хорошо видно на муль- тиспектральных космических снимках. В ООО «Добровольное» растительные остатки при вспашке заделываются в почву и 3780 га находится под чистыми парами. Это, наряду с другими фактора- ми, приводит к усилению интенсивности водной эрозии, которое сопровождается формированием русла водотоков, об- разованием промоин и увеличением протяженности процессов линейной водной эрозии за 2013–2019 гг. с 9,0 до 10,5 км.
title: Phylogenetic Model Selection via Machine Learning
Creators: name: Dong, Yanghe
Publisher: name: The Australian National University
Year: 2024
Subjects: subject: phylogenetics
subject: amino acid
subject: model selection
subject: rate heterogeneity
subject: neural network

description: Deposited by the author 27.10.24
description: Phylogenetic inference, which reconstructs evolutionary trees from DNA or amino acid sequences, is crucial for understanding the evolutionary histories of species on Earth. Model selection is a fundamental step in this process, determining the best-fit model for the data. However, classic maximum likelihood-based methods for model selection are computationally intensive. This study introduces a machine learning-based framework for amino acid model selection, consisting of three components: protFinder for selecting the best-fit substitution model, RHASFinder for identifying the appropriate rate heterogeneity model, and protFFinder for determining the use of empirical pre-estimated frequencies. Our framework is an order of magnitude faster than the widely used ModelFinder, while maintaining comparable accuracy.
Additional file 1 of Impacts of attending an inclusive STEM high school: meta-analytic estimates from five studies
Creators: name: Means, Barbara
name: Wang, Haiwen
name: Wei, Xin
name: Young, Viki
name: Iwatani, Emi
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Environmental Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 1: Appendix A-1. School Identification, Recruiting, and Participation. Supplementary Figure A-1. School identification and recruiting for Cohorts 1 and 2 in North Carolina. Supplementary Figure A-2. School identification and recruiting for Cohorts 3 and 4 in Texas. Supplementary Figure A-3. School identification and recruiting for Cohort 5 in Ohio
RAL Ozone Profile Algorithm Product User Guide
Creators: name: Siddans, Richard
name: Latter, Barry
name: Kerridge, Brian
name: Miles, Georgina
Publisher: name: Centre for Environmental Data Analysis (CEDA)
Year: 2025
Subjects: Ozone
Remote Sensing

description: This Product User Guide describes the details of the RAL Ozone Profile dataset, including pertinent attributes of the data and algorithm used.
Leveraging Machine Learning to Forecast Alzheimer's Disease Progression
Creators: name: A.Kamatchi, Dr.V.Maniraj
Publisher: name: Zenodo
Year: 2025

description: In this research, machine learning methods are employed to predict Alzheimer's disease. As one of theneurodegenerative disorders, its symptoms begin subtly but progressively deteriorate. Alzheimer's diseaseis a common form of dementia. Cognitive aspects such as age, frequency of medical consultations, theMini-Mental State Examination (MMSE), and educational background can serve as indicators forforecasting the onset of Alzheimer's.
Содержание гумуса в выщелоченном черноземе в зависимости от севооборота, системы обработки почвы и удобрений в лесостепи юга Западной Сибири
Creators: name: Т. А. ЛИТВИНЦЕВА
name: С. В. УСЕНКО
name: В. И. УСЕНКО
Publisher: name: Земледелие
Year: 2020
Subjects: содержание гумуса
севооборот
бессменный посев
обработка почвы
прямой посев
удобрения

description: Исследования проводили с целью изучения влияния севооборота, систе- мы обработки почвы и удобрений на содержание гумуса в выщелоченном среднемощном среднесуглинистом чер- ноземе. Работу выполняли в Алтайском крае в стационарном многофакторном полевом опыте со следующей схемой: севооборот (А) – бессменная пшеница, полевой севооборот; обработка почвы (В) – без обработки (No-till), мелкая плоскорезная на 14…16 см, глубокая плоскорезная на 25…27 см; удобрения (С) – без удобрений, аммофос при по- севе, аммиачная селитра до посева (под горох – аммофос) + аммофос при посеве. Содержание гумуса (по Тюри- ну) в пахотном (0…20 см) слое почвы составляло 3,80 %, подвижного (по Чирикову) фосфора и калия – соответ- ственно 200 и 180 мг/кг. Содержание гумуса определяли в образцах почвы, отобранных в пахотном (0…20) и под- пахотном (20…40 см) слоях в 2019 г. после трех ротаций в заключительном поле севооборота, и под бессменной пшеницей. Варьирование величины этого показателя в пахотном слое почвы определяется влиянием севооборота (42,7 %) и обработки почвы (38,0 %), в подпахотном – преимущественно се- вооборотом (66,0 %) и меньше (17,0 %) обработкой почвы. Отказ от севооборота при переходе к бессменной пшенице сопровождается снижением содержания гумуса в пахотном и подпахотном слоях почвы с 4,19 до 3,70 % и с 3,89 до 3,18 % соответственно, а замена глубокой на мелкую и нулевую обработки – его уве- личением с 3,65 до 3,95 и 4,22 % и с 3,28 до 3,66 и 3,66 %. Влияние обработки на содержание гумуса в пахотном слое под культурами севооборота было сильнее, чем в подпахотном и под бессменной пшеницей. Удобрения не оказывали существенного влияния на содержание гумуса в почве.
INFLUENCE OF AEROBIC TRAINING ON SELECTED ENDURANCE PARAMETERS AMONG COLLEGE MEN STUDENTS
Creators: name: Ranganatha H K* & Dr. G. Kumarasamy**
Publisher: name: Zenodo
Year: 2023

description: The purpose of the study was designed to examine the effect of aerobic training on strength endurance and cardio respiratory endurance among college men students.  For the purpose of the study, thirty college men students from the colleges in and around Bangalore, Karnataka State, India were selected as subjects.  They were divided into two equal groups.  each group consisted of fifteen subjects.  Group I underwent aerobic training for three days per week for twelve weeks.  Group II acted as control who did not undergo any special training programme apart from their regular physical education programme. The following variables, namely strength endurance and cardio respiratory endurance were selected as criterion variables.  All the subjects of two groups were tested on selected dependent variables namely strength endurance and cardio respiratory endurance by using bend knee sit ups and cooper’s 12 min run / walk test at prior to and immediately after the training programme. The analysis of covariance was used to analyze the significant difference, if any among the groups. The .05 level of confidence was fixed as the level of significance to test the ‘F’ ratio obtained by the analysis of covariance, which was considered appropriate. The results of the study showed that there was a significant difference between aerobic training group and control group on strength endurance and cardio respiratory endurance. And also it was found that there was a significant improvement on selected criterion variables such as strength endurance and cardio respiratory endurance due to aerobic training.
Additional file 1 of SHOOT: phylogenetic gene search and ortholog inference
Creators: name: Emms, David Mark
name: Kelly, Steven
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: Plant Biology

description: Additional file 1. This file contains the supplemental figures and their associated legends. Table S1. UniProt 2020 Reference Proteomes - Species list. Table S2. Fungi - Species list. Table S3. Metazoan - species list. Table S4. Plants – species list. Table S5. Bacteria & Archaea - strains list