cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Finite temperature induced fermion number
Creators: name: Dunne, Gerald V.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Soft Condensed Matter (cond-mat.soft)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The induced fractional fermion number at zero temperature is topological (in the sense that it is only sensitive to global asymptotic properties of the background field), and is a sharp observable (in the sense that it has vanishing rms fluctuations). In contrast, at finite temperature, it is shown to be generically nontopological, and not a sharp observable.
description: 6 pp, 2 figs; based on talks at Workshop on Lattice Hadron Physics (Cairns, July 2001), Workshop on Light-Cone: Particles and Strings (Trento, September 2001), and Workshop on Quantum Field Theory in External Conditions (Leipzig, September 2001)
Additional file 1: of Comparison of echocardiographic indices of right ventricular systolic function and ejection fraction obtained with continuous thermodilution in critically ill patients
Creators: name: BarthĂŠlĂŠmy, Romain
name: Roy, Xavier
name: Tujia Javanainen
name: Mebazaa, Alexandre
name: Chousterman, Benjamin
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Developmental Biology
subject: Computational Biology

description: Criteria for severe tricuspid regurgitation and Figure of Doppler tissue velocities and time intervals obtained at lateral tricuspid valve annulus (DOCX 218 kb)
Additional file 1 of Using a microprocessor knee (C-Leg) with appropriate foot transitioned individuals with dysvascular transfemoral amputations to higher performance levels: a longitudinal randomized clinical trial
Creators: name: Chandrasekaran Jayaraman
name: Chaithanya K. Mummidisetty
name: Albert, Mark V.
name: Lipschutz, Robert
name: Shenan Hoppe-Ludwig
name: Mathur, Gayatri
name: Jayaraman, Arun
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Neuroscience
subject: Science Policy
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1: Table S1. Hofstad study statistical design quality rating.
Briarosaccus auratum Noever & Olson & Glenner 2016, N. SP.
Creators: name: Noever, Christoph
name: Olson, Andrew
name: Glenner, Henrik
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Maxillopoda
Kentrogonida
Peltogastridae
Briarosaccus
Briarosaccus auratum

description: Briarosaccus auratum N. SP.
 Host: Lithodes aequispinus
 Holotype: One externa removed from its host, L. aequispinus, Southeastern Alaska. Museum number YPM 74282. Paraype: One externa removed from its host, L. aequispinus, Southeastern Alaska. Museum number YPM 74383.
Molecular reference data: GenBank accession numbers KR812199 to KR812208 for COI, and KR812147 to KR812156 for 16S
 Etymology: The species is named after its host L. aequispinus, which is known as the golden king crab.
description: Published as part of Noever, Christoph, Olson, Andrew & Glenner, Henrik, 2016, Two new cryptic and sympatric species of the king crab parasite Briarosaccus (Cirripedia: Rhizocephala) in the North Pacific, pp. 3-14 in Zoological Journal of the Linnean Society 176 (1) on page 9, DOI: 10.1111/zoj.12304, http://zenodo.org/record/10108926
Determining the Extent of Aspergillus Mycelial Permeation in Sliced Bread
Creators: name: Mishra, Mihika
name: Watson, Brooklynn
Publisher: name: The University of British Columbia
Year: 2023

description: This study investigated the extent of Aspergillus mycelial permeation in bread beyond the visible region of mould presence. 18 fresh slices of bread were infected with Aspergillus mould and the area covered over time was measured. Cross-sections of the bread were examined with a microscope to determine where mycelium was present. The area of mycelial presence was compared to the area of visible mould on the bread. Current guidelines recommend that baked goods be discarded at the first sign of mould because mould can easily penetrate soft and porous foods. The results of this study support this recommendation, as there was considerable variation in the extent of mycelial permeation in bread, especially in the early stages of mould growth. It was found that, on average, mycelium was present a minimum of 8.26% ± 2.23% and a maximum of 40.90% ± 3.47% beyond the region of visible mould.
Additional file 1: of Long-term use of interferon-β in multiple sclerosis increases Vδ1−Vδ2−Vγ9− γδ T cells that are associated with a better outcome
Creators: name: Guzailiayi Maimaitijiang
name: Watanabe, Mitsuru
name: Shinoda, Koji
name: Isobe, Noriko
name: Nakamura, Yuri
name: Masaki, Katsuhisa
name: Matsushita, Takuya
name: Yoshikai, Yasunobu
name: Jun-Ichi Kira
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Neuroscience
subject: Pharmacology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Table S1. Clinical demographics of IFN-β-treated MS patients in the NEDA and EDA groups. Table S2. Clinical demographics of untreated MS patients in the NEDA and EDA groups. Table S3. Comparison of clinical demographics between RRMS and PMS patients. Table S4. Comparison of the percentages of CD4+ T cell subsets between the untreated MS group, IFN-β-treated MS group and healthy controls. Table S5. Comparison of the percentages of CD8+ T cell subsets between the untreated MS group, IFN-β-treated MS group and healthy controls. Table S6. Comparison of the percentages of cytokine-producing αβ T cell subsets between the untreated MS group, IFN-β-treated MS group and healthy controls. Table S7. Comparison of the percentages of cytokine-producing γδ T cell subsets in IFN-β-treated MS patients stratified to the NEDA or EDA groups. Table S8. Comparison of the percentages of γδ T cell subsets in untreated MS patients stratified to the NEDA or EDA groups. Table S9. Comparison of the percentages of B cell subsets in untreated MS patients stratified to the NEDA or EDA groups. Table S10. Comparison of the percentages of γδ T cell subsets between RRMS and PMS patients. Table S11. Comparison of the percentages of CD4+ T cell subsets between RRMS and PMS patients. Table S12. Comparison of the percentages of CD8+ T cell subsets between RRMS and PMS patients. Table S13. Comparison of the percentages of B cell subsets between RRMS and PMS patients Table S14. Comparison of the percentages of cytokine-producing γδ T cell subsets between RRMS and PMS patients. Table S15. Comparison of the percentages of cytokine-producing αβ T cell subsets between RRMS and PMS patients. (PDF 568 kb)
Additional file 2 of The divergence of alternative splicing between ohnologs in teleost fishes
Creators: name: Yuwei Wang
name: Baocheng Guo
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2: Fig. S1. Transcripts number between ohnologs and their singleton orthologs. The number on the top of the box is the mean of each group.
Anthrax greatheadi El Hawagry 1998
Creators: name: Arabyat, Sahar
name: Katbeh-Bader, Ahmad
name: Greathead, David
Publisher: name: Zenodo
Year: 2004
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Bombyliidae
Anthrax
Anthrax greatheadi

description: Anthrax greatheadi El Hawagry 1998
Material: Two specimens: Ar Rumman 6.V.2002 (1ɗ); As Salt 28.V.1993 (1ɗ). Distribution: Palaearctic: Egypt.
This species was described from Sinai. It seems to be a rare species in Jordan.
description: Published as part of Arabyat, Sahar, Katbeh-Bader, Ahmad & Greathead, David, 2004, The bee flies (Diptera: Bombyliidae) of Jordan, pp. 1-48 in Zootaxa 654 on page 27, DOI: 10.5281/zenodo.158701
Merged H/H2 and C+/C/CO transitions in the Orion Bar
Creators: name: Kirsanova, Maria S.
name: Wiebe, Dmitri S.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: High-resolution ALMA images towards the Orion Bar show no discernible offset between the peak of H2 emission in the photodissociation region (PDR) and the CO(3-2) and HCO+(4-3) emission in the molecular region. This implies that positions of H2 and CO dissociation fronts are indistinguishable in the limit of ALMA resolution. We use the chemo-dynamical model MARION to show that the ALMA view of the Orion Bar, namely, no appreciable offset between the CO(3-2) and HCO+(4-3) peaks, merged H2 and CO dissociation fronts, and high intensity of HCO+(4-3) emission, can only be explained by the ongoing propagation of the dissociation fronts through the molecular cloud, coupled to the dust motion driven by the stellar radiation pressure, and are not reproduced in the model where the dissociation fronts are assumed to be stationary. Modelling line intensities, we demonstrate that after the fronts have merged, the angular separation of the CO(3-2) and HCO+(4-3) peaks is indeed unresolvable with the ALMA observations. Our model predictions are consistent with the results of the ALMA observations about the relation of the bright HCO+(4-3) emission to the compressed gas at the border of the PDR in the sense that the theoretical HCO+(4-3) peak does correspond to the gas density enhancement, which naturally appears in the dynamical simulation, and is located near the H2 dissociation front at the illuminated side of the CO dissociation front.
description: accepted to MNRAS
Postmigrant Spatial Justice? The Case of ‘Berlin Develops New Neighbourhoods’ (BENN)
Creators: name: Jahre, Sylvana
Publisher: name: Humboldt-Universität zu Berlin
Year: 2021
Subjects: subject: BENN
subject: Berlin
subject: critical urban research
subject: forced migration
subject: migration policy
subject: refugees
subject: postmigration
subject: social city
subject: spatial justice
subject: 303 Gesellschaftliche Prozesse

description: This article discusses the introduction of a new urban policy in Berlin, Germany, in the frame of postmigrant spatial justice. In 2017, Berlin established so-called ‘integration management programs’ in 20 different neighbourhoods around large refugee shelters as a response to the growing challenges local authorities faced after the administrative collapse in 2015/16. A new policy agenda provides the opportunity to learn from previous policies and programs—especially when it is addressed to the local dimension of integration, a widely and controversially discussed issue. Drawing on fieldwork conducted in Berlin in 2018 and 2019, this article discusses how migration is framed in urban social policy against both postmigrant and spatial justice theory.
Splat! : Modelling the Relationship Between Drop Height and Maximum Spreading Diameter of Various Liquids
Creators: name: Ye, Kelly
name: Divinagracia, Anna
Publisher: name: The University of British Columbia
Year: 2023

description: The physics behind the spreading of falling droplets is a subject of ongoing debate, with numerous models proposed to describe the behaviour. This project explores the relationship between drop height and maximum spreading diameter (Dmax) of water, ethanol, canola oil, and 1% milk. Videos of droplets falling onto a flat surface, taken on a 240 FPS camera, were analysed to determine Dmax and compared with two proposed models based on (1) energy conservation and (2) inertia and mass conservation. The fit of the models to the data was assessed using t-scores and f-tests. Using the determined values, a Python simulation was created to generate a predicted plot of the resultant disk from any inputted drop height and volume. Unexpectedly, neither original proposed model accurately described the data due to the lack of an intercept (since Dmax ≠ 0 when drop height is 0 m). Including an intercept improved the goodness-of-fit of both models; in these adjusted models, the model based on energy conservation was a better fit to the data. Incorporation of other properties, such as viscosity, may allow more accurate predictions through simulation. Applications include the transmission of waterborne disease, industrial processes, and forensic bloodstain analysis.
Cryptocellus Westwood 1874
Creators: name: Botero-Trujillo, Ricardo
name: Carvalho, Leonardo S.
name: Florez D., Eduardo
name: Prendini, Lorenzo
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Ricinulei
Ricinoididae
Cryptocellus

description: Cryptocellus Westwood, 1874
 Cryptocellus Westwood, 1874: 201, type species by monotypy: Cryptocellus foedus Westwood, 1874; Ewing, 1929: 588; Beck and Schubart, 1968: 68–73.
 Heteroricinoides Dumitresco and Juvara-Balş, 1977: 148 (synonymized by Platnick and Shadab, 1977: 16), type species by original designation: Heteroricinoides bordoni Dumitresco and Juvara-Balş, 1977.
description: Published as part of Botero-Trujillo, Ricardo, Carvalho, Leonardo S., Florez D., Eduardo & Prendini, Lorenzo, 2021, Four New Species of " Hooded Tick-Spiders " (Ricinulei, Ricinoididae) from South and Central America, with Clarification of the Identity of Cryptocellus leleupi Cooreman, 1976, pp. 1-36 in American Museum Novitates 2021 (3976) on page 4, DOI: 10.1206/3976.1, http://zenodo.org/record/5356288
Synalpheus bocas Anker & Toth 2008
Creators: name: Anker, Arthur
name: Pachelle, Paulo P. G.
name: Grave, Sammy De
name: Hultgren, Kristin M.
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Alpheidae
Synalpheus
Synalpheus bocas

description: Synalpheus bocas Anker & Tóth, 2008
 Synalpheus bocas Anker & Tóth 2008: 17, figs 10, 11, 14E–H; Macdonald et al. 2009: 11, pls. 1D, 2A, B; Hultgren et al. 2010: 227, pl. 2A, B.
 Material examined. Honduras: 1 male, 1 female, OUMNH. ZC.2007-20-197, Utila, Jack Neil Cove, 16°04.590’N 086°56.318’W, 15 m, in Ailochroia crassa, coll. S. De Grave & A. Anker, 02.07.2007 [fcn H-51B].
 Description. For detailed description and illustrations see Anker & Tóth (2008).
 Size range. The male and female from Utila, at 2.4 mm cl and 3.9 mm cl, respectively, are smaller than the type specimens from Panama, at 4.9 mm cl for the largest male and 5.8 mm cl for the largest female (Anker & Tóth 2008).
 Colour in life. Mostly semitransparent, with faint red spotting, major chela distally pale orange; eggs green (Anker & Tóth 2008; Macdonald et al. 2009).
 Type locality. Bocas del Toro, Panama.
 Distribution. Western Atlantic: Caribbean Sea: Panama [Bocas del Toro, Isla Grande], Curaçao, Jamaica [Discovery Bay, Rio Bueno], Honduras [Utila] (Anker & Tóth 2008; Macdonald et al. 2009; Hultgren et al. 2010; present study; see map in Fig. 51).
 Ecology. Coral reefs and adjacent coral rubble beds with abundance of sponges; depth range: 0.5–15 m; the Utila specimens were found in a sponge identified in the field as Aiolochroia crassa; however, this sponge identification remains questionable since in Panama, Curaçao and Jamaica, S. bocas is normally associated with sponges of the genus Xestospongia, e.g., X. rosariensis, X. proxima and X. subtriangularis (Anker & Tóth 2008; Macdonald et al. 2009).
 Remarks. The Utila specimens appear to be relatively young individuals of S. bocas, but with all diagnostic characters of the species, including the absence of a blade on the scaphocerite. Both were infested with unidentified abdominal isopods (Bopyridae, Hemiarthrinae).
description: Published as part of Anker, Arthur, Pachelle, Paulo P. G., Grave, Sammy De & Hultgren, Kristin M., 2012, 3598, pp. 1-96 in Zootaxa 3598 (1) on page 24, DOI: 10.11646/zootaxa.3598.1.1, http://zenodo.org/record/5694454
Connective neck evolution and conductance steps in hot point contacts
Creators: name: Halbritter, A.
name: Csonka, Sz.
name: Kolesnychenko, O. Yu.
name: Mihaly, G.
name: Shklyarevskii, O. I.
name: van Kempen, H.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Dynamic evolution of the connective neck in Al and Pb mechanically controllable break junctions was studied during continuous approach of electrodes at bias voltages V_b up to a few hundred mV. A high level of power dissipation (10^-4 - 10^-3 W) and high current density (j > 10^10 A/cm^2) in the constriction lead to overheating of the contact area, electromigration and current-enhanced diffusion of atoms out of the "hot spot". At a low electrode approach rate (10 - 50 pm/s) the transverse dimension of the neck and the conductance of the junction depend on V_b and remain nearly constant over the approach distance of 10 - 30 nm. For V_b > 300 mV the connective neck consists of a few atoms only and the quantum nature of conductance manifests itself in abrupt steps and reversible jumps between two or more levels. These features are related to an ever changing number of individual conductance channels due to the continuous rearrangement in atomic configuration of the neck, the recurring motion of atoms between metastable states, the formation and breaking of isolated one-atom contacts and the switching between energetically preferable neck geometries.
description: 21 pages 10 figures
The First Two Thousand Years of Star Formation
Creators: name: Machida, Masahiro N.
name: Basu, Shantanu
Publisher: name: arXiv
Year: 2019
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Starting from a prestellar core with a size of $1.2\times10^4$ AU, we calculate the evolution of a gravitationally collapsing core until $\sim2000$ yr after protostar formation using a three-dimensional resistive magnetohydrodynamic simulation, in which the protostar is resolved with a spatial resolution of $5.6\times10^{-3}$ AU. Following protostar formation, a rotationally supported disk is formed. Although the disk size is as small as $\sim2-4$ AU, it remains present until the end of the simulation. Since the magnetic field dissipates and the angular momentum is then not effectively transferred by magnetic effects, the disk surface density gradually increases and spiral arms develop due to gravitational instability. The disk angular momentum is then transferred mainly by gravitational torques, which induce an episodic mass accretion onto the central protostar. The episodic accretion causes a highly time-variable mass ejection (the high-velocity jet) near the disk inner edge, where the magnetic field is well coupled with the neutral gas. As the mass of the central protostar increases, the jet velocity gradually increases and exceeds $\sim100$ km s$^{-1}$. The jet opening angle widens with time at its base, while the jet keeps a very good collimation on the large scale. In addition, a low-velocity outflow is driven from the disk outer edge. A cavity-like structure, a bow shock and several knots, all of which are usually observed in star-forming regions, are produced in the outflowing region.
description: 31 pages, 13 figures, Accepted for publication in ApJ
Additional file 3 of The divergence of alternative splicing between ohnologs in teleost fishes
Creators: name: Yuwei Wang
name: Baocheng Guo
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3: Fig. S2. Distribution of alternative splicing forms in singletons and ohnologs based on prediction with RNA-seq data.
Large Scale Structure from the Higgs fields of the Supersymmetric Standard Model
Creators: name: Bastero-Gil, M.
name: Di Clemente, V.
name: King, S. F.
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Astrophysics (astro-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We propose an alternative implementation of the curvaton mechanism for generating the curvature perturbations which does not rely on a late decaying scalar decoupled from inflation dynamics. In our mechanism the supersymmetric Higgs scalars are coupled to the inflaton in a hybrid inflation model, and this allows the conversion of the isocurvature perturbations of the Higgs fields to the observed curvature perturbations responsible for large scale structure to take place during reheating. We discuss an explicit model which realises this mechanism in which the $μ$ term in the Higgs superpotential is generated after inflation by the vacuum expectation value of a singlet field. The main prediction of the model is that the spectral index should deviate significantly from unity, $|n-1|\sim 0.1$. We also expect relic isocurvature perturbations in neutralinos and baryons, but no significant departures from gaussianity and no observable effects of gravity waves in the CMB spectrum.
description: Version to appear in PRD. Latex, 1+28 pages, 1 fig
Anthrax niger Austen 1937
Creators: name: Arabyat, Sahar
name: Katbeh-Bader, Ahmad
name: Greathead, David
Publisher: name: Zenodo
Year: 2004
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Bombyliidae
Anthrax
Anthrax niger

description: Anthrax niger (Austen, 1937)
Material: Two Specimens: Dead Sea 30.X.2002 (1Ψ) during flying; Wadi Shuqayq 24.IX.2002 (1Ψ) on the ground.
Distribution: Palaearctic: Palestine.
description: Published as part of Arabyat, Sahar, Katbeh-Bader, Ahmad & Greathead, David, 2004, The bee flies (Diptera: Bombyliidae) of Jordan, pp. 1-48 in Zootaxa 654 on page 27, DOI: 10.5281/zenodo.158701
Constraining FIMP from the structure formation of the Universe: analytic mapping from $m_{\mathrm{WDM}}$
Creators: name: Kamada, Ayuki
name: Yanagi, Keisuke
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: A feebly interacting massive particle (FIMP), contrasting with a weakly interacting massive particle (WIMP), is an intriguing dark matter (DM) candidate. Light (keV-scale) FIMP DM is of particular interest: its radiative decay leaves a line signal in x-ray spectra; and it is warm dark matter (WDM) and alters the galactic-scale structure formation of the Universe from that with WIMP DM. Once a possible x-ray line is reported (e.g., $3.5 \,\mathrm{keV}$ line and $7 \,\mathrm{keV}$ FIMP DM is inferred), one has to check whether or not this FIMP DM is compatible with the structure formation. Here is an issue: the structure formation constraint on WDM is often reported in terms of the so-called thermal WDM mass $m_{\mathrm{WDM}}$, which cannot be directly applied to FIMP parameters. In this paper, we introduce a benchmark FIMP model that represents well a broad class of FIMP models. A big advantage of this benchmark is that we can derive the analytic formula of the non-thermal phase space distribution of FIMPs produced from freeze-in processes. By further deriving a certain "warmness" quantity, we can analytically map $m_{\mathrm{WDM}}$ to FIMP parameters. Our analytic map indicates that $7 \,\mathrm{keV}$ FIMP DM, without entropy production or a degenerate spectrum, is in tension with the latest Lyman-$α$ forest data. Our analytic map will be very useful for future updates of observational constraints and reports of x-ray lines. It is also very easy to incorporate our analytic formula into a Boltzmann solver so that a linear matter power spectrum is readily accessible. Our benchmark model will facilitate FIMP searches and particle physics model-building.
description: 20 pages, 11 figures
Additional file 3: of Longitudinal variation in human immunodeficiency virus long terminal repeat methylation in individuals on suppressive antiretroviral therapy
Creators: name: Cortés-Rubio, César
name: Oca, Gonzalo Salgado-Montes De
name: Prado-Galbarro, Francisco
name: Matías-Florentino, Margarita
name: Murakami-Ogasawara, Akio
name: Kuri-Cervantes, Leticia
name: Carranco-Arenas, Ana
name: Ormsby, Christopher
name: Cortés-Rubio, Ivette
name: Reyes-Terán, Gustavo
name: Ávila-Ríos, Santiago
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: Sociology
subject: FOS: Sociology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology
subject: 110309 Infectious Diseases
subject: 60506 Virology

description: Figure S2. Detailed HIV 5’-LTR variant composition and methylation analysis in the rest of participants. Detailed variant composition per time point is shown for ten participants with short-term antiretroviral treatment not included in Fig. 3 (TP23, TP24, TP27, TP29, TP30, TP32, TP26, TP28, TP33, TP34), and for the single time point available for the 10 participants with long-term antiretroviral therapy (TP35, TP36, TP37, TP38, TP40, TP41, TP43, TP44, TP45, TP46). Each horizontal line represents a variant. The number of reads representing that variant and its proportion in the sample are shown on the right. Each circle represents a canonical CpG site, numbered according to the HXB2 reference: black–methylated, white–unmethylated, gray–mutated. (PDF 16804 kb)
Additional file 4 of The divergence of alternative splicing between ohnologs in teleost fishes
Creators: name: Yuwei Wang
name: Baocheng Guo
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 4: Fig. S3. Alternative splicing forms between ohnologs and their singleton orthologs from RNA-seq data in liver. The number on the top of the box is the mean of each group.
Symmetry Induced Group Consensus
Creators: name: Klickstein, Isaac
name: Pecora, Louis
name: Sorrentino, Francesco
Publisher: name: arXiv
Year: 2019
Subjects: subject: Physics and Society (physics.soc-ph)
subject: Dynamical Systems (math.DS)
subject: Adaptation and Self-Organizing Systems (nlin.AO)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: There has been substantial work studying consensus problems for which there is a single common final state, although there are many real-world complex networks for which the complete consensus may be undesirable. More recently, the concept of group consensus whereby subsets of nodes are chosen to reach a common final state distinct from others has been developed, but the methods tend to be independent of the underlying network topology. Here, an alternative type of group consensus is achieved for which nodes that are symmetric achieve a common final state. The dynamic behavior may be distinct between nodes that are not symmetric. We show how group consensus for heterogeneous linear agents can be achieved via a simple coupling protocol that exploits the topology of the network. We see that group consensus is possible on both stable and unstable trajectories. We observe and characterize the phenomenon of isolated group consensus, where one or more clusters may achieve group consensus while the other clusters do not.
description: 17 pages, 4 figures
Observation of Giant Quantized Phonon Modes in Graphene via Tunneling Spectra
Creators: name: Zhang, Yu
name: Yang, Qian
name: He, Lin
Publisher: name: arXiv
Year: 2019
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Phonons, the fundamental vibrational modes of a crystal lattice, play a crucial role in determining electronic properties of materials through electron-phonon interaction. However, it has proved difficult to directly probe the phonon modes of materials in electrical measurements. Here, we report the observation of giant quantized phonon peaks of the K and K out-of-plane phonon in graphene monolayer in magnetic fields via tunneling spectra, which are usually used to measure local electronic properties of materials. A perpendicular magnetic field quantizes massless Dirac fermions in graphene into discrete Landau levels (LLs). We demonstrate that emission or absorption of phonons of quasiparticles in the LLs of graphene generates a new sequence of discrete states: the quantized phonon modes. In our tunneling spectra, the intensity of the observed phonon peaks is about 50 times larger than that of the LLs because that the K and K out-of-plane phonon opens an inelastic tunneling channel. We also show that it is possible to switch on off the quantized phonon modes at nanoscale by controlling interactions between graphene and the supporting substrate.
description: 4 figures in main text
Anthrax sticticus Klug 1832
Creators: name: Arabyat, Sahar
name: Katbeh-Bader, Ahmad
name: Greathead, David
Publisher: name: Zenodo
Year: 2004
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Bombyliidae
Anthrax
Anthrax sticticus

description: Anthrax sticticus Klug, 1832
Material: Three specimens: As Salt 1.IX.1993 (1Ψ); Wadi Shuqayq 24.IX.2002 (2ɗ).
Distribution: Afrotropical: Chad, Eritrea, Guinea­Bissau, Nigeria, Senegal. Palaearctic: Afghanistan, Armenia, Azerbaijan, Cyprus, Greece, Gruzia, Iran, Italy, Kyrgyz Republic, Macedonia, Oman, Palestine, Syria, Tajikistan, Turkey, Turkmenistan, Uzbekistan, Yugoslavia.
Greathead (1967) suggested that this species is a parasite of mud dauber wasps (Sphecidae) (El­Hawagry et al 2000) and has also been reared from megachilid bees (du Merle, 1975).
description: Published as part of Arabyat, Sahar, Katbeh-Bader, Ahmad & Greathead, David, 2004, The bee flies (Diptera: Bombyliidae) of Jordan, pp. 1-48 in Zootaxa 654 on pages 27-28, DOI: 10.5281/zenodo.158701
Additional file 1: of The implicit beliefs and implicit behavioral tendencies towards smoking-related cues among Chinese male smokers and non-smokers
Creators: name: Ren, Lei
name: Cui, Long-Biao
name: Chen, Chen
name: Dong, Xiaojun
name: Wu, Zhongying
name: Wang, Yidi
name: Yang, Qun
Publisher: name: figshare
Year: 2019
Subjects: subject: Pharmacology
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: Mental Health

description: Details of survey questionnaire, including demographics, smoking characteristics and the Fagerstrรถm test for nicotine dependence of participants. (DOCX 13 kb)
Tunneling of quantum rotobreathers
Creators: name: Dorignac, J.
name: Flach, S.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: We analyze the quantum properties of a system consisting of two nonlinearly coupled pendula. This non-integrable system exhibits two different symmetries: a permutational symmetry (permutation of the pendula) and another one related to the reversal of the total momentum of the system. Each of these symmetries is responsible for the existence of two kinds of quasi-degenerated states. At sufficiently high energy, pairs of symmetry-related states glue together to form quadruplets. We show that, starting from the anti-continuous limit, particular quadruplets allow us to construct quantum states whose properties are very similar to those of classical rotobreathers. By diagonalizing numerically the quantum Hamiltonian, we investigate their properties and show that such states are able to store the main part of the total energy on one of the pendula. Contrary to the classical situation, the coupling between pendula necessarily introduces a periodic exchange of energy between them with a frequency which is proportional to the energy splitting between quasi-degenerated states related to the permutation symmetry. This splitting may remain very small as the coupling strength increases and is a decreasing function of the pair energy. The energy may be therefore stored in one pendulum during a time period very long as compared to the inverse of the internal rotobreather frequency.
description: 20 pages, 11 figures, REVTeX4 style
MOESM2 of Prevalence of gestational diabetes mellitus and associated factors among women attending antenatal care at Gondar town public health facilities, Northwest Ethiopia
Creators: name: Achenef Muche
name: Oladapo Olayemi
name: Yigzaw Gete
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2. The specifications of the HemoCue Glucose B-201+ glucometer.
Additional file 5 of The divergence of alternative splicing between ohnologs in teleost fishes
Creators: name: Yuwei Wang
name: Baocheng Guo
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 5: Fig. S4. Distribution of coverage depth per exon site.
The geometry of weakly selfdual Kahler surfaces
Creators: name: Apostolov, Vestislav
name: Calderbank, David M. J.
name: Gauduchon, Paul
Publisher: name: arXiv
Year: 2001
Subjects: subject: Differential Geometry (math.DG)
subject: Algebraic Geometry (math.AG)
subject: FOS: Mathematics
subject: 53C55; 53C25, 53B35

description: We study Kahler surfaces with harmonic anti-selfdual Weyl tensor. We provide an explicit local description, which we use to obtain the complete classification in the compact case. We give new examples of extremal Kahler metrics, including Kahler-Einstein metrics and conformally Einstein Kahler metrics. We also extend some of our results to almost Kahler 4-manifolds, providing new examples of Ricci-flat almost Kahler metrics which are not Kahler.
description: LaTeX, 38 pages; two references added
A Systematic Analysis of Stellar Populations in the Host Galaxies of SDSS Type I QSOs
Creators: name: Jin, Jun-Jie
name: Zhu, Yi-Nan
name: Meng, Xian-Min
name: Lei, Feng-Jie
name: Wu, Hong
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We investigate the relationship between host galaxies' stellar content and active galactic nuclei (AGN) for optically selected QSOs with z$
Anthrax virgo Egger 1859
Creators: name: Arabyat, Sahar
name: Katbeh-Bader, Ahmad
name: Greathead, David
Publisher: name: Zenodo
Year: 2004
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Bombyliidae
Anthrax
Anthrax virgo

description: Anthrax virgo Egger, 1859
Material: 14 specimens: Ira 15.VII.2002 (1Ψ); Ajlun 27.V.2002 (1ɗ, 1Ψ); Ar Rumman 6.V.2002 (1Ψ); Ash Shawbak 7.VIII.2002 (1ɗ, 1Ψ); Ash Shunah 15.IX.1987 (1Ψ); Dayr Alla 25.V.1974 (1ɗ); Dibbin 13.V.2002 (1ɗ, 2Ψ); Jarash 8.V.2002 (1ɗ); Kafr Huda 2.IX.2002 (1ɗ); Mahis 15.VIII.2002 (1ɗ).
Distribution: Palaearctic: Albania, Algeria, Armenia, Austria, Azerbaijan, Bulgaria, Croatia, France, Greece, Gruzia, Hungary, Italy, Libya, Malta, Morocco, Palestine, Saudi Arabia, Spain, Tunisia, Turkey.
This species is common in Jordan. It has been reared from Anthocopa spp. (Megachilidae) (du Merle, 1975)
description: Published as part of Arabyat, Sahar, Katbeh-Bader, Ahmad & Greathead, David, 2004, The bee flies (Diptera: Bombyliidae) of Jordan, pp. 1-48 in Zootaxa 654 on page 28, DOI: 10.5281/zenodo.158701
An open source DIC system to test additively manufactured parts
Creators: name: Allan, Andrew Ogando Dos Santos
Publisher: name: The University of Texas at Austin
Year: 2020
Subjects: Digital Image Correlation (DIC)
DIC
Lattice structures
Direct metal laser sintering (DMLS)

description: Additively manufactured (AM) parts often assume unconventional geometries. Testing them in a load frame is difficult because they lack standard features on which traditional measurement devices (e.g. extensometers) can be attached. To solve this problem, an open source Digital Image Correlation (DIC) testing system was designed and implemented to complement an Instron load frame. DIC is a non-contact measurement technique that measures full-field strains and displacements from image sequences captured during load tests. The first step in designing the system was to identify the hardware, software, and specimen features necessary for successful DIC analysis. Then, based on that information and the lab’s testing requirements, the system components were selected, and hardware was designed to install them on the load frame. The system build was finalized by establishing a procedure for accessing, processing, and plotting the DIC data. The resulting DIC system can perform stress-strain analysis on specimens ranging in size from 0.5mm x 3mm to 10cm x 10cm in size. The total cost of the system is approximately $1,300. The final section presents a study that was performed to demonstrate the efficacy of the DIC system. It examines the effective material properties of direct metal laser sintered (DMLS) lattice struts as a function of build orientation and size. The test specimens consist of miniature tensile bars with four struts of equal diameter in the gauge section. Two different diameters of struts were built in five orientations and tested with the DIC system to evaluate Young’s modulus, ultimate strength, and elongation at break. The results indicate that all three properties decrease with decreasing build angle and strut diameter. Varied amounts of surface roughness on the struts resulting from varied build conditions could explain the observed trends in material properties, but further analysis is necessary to fully contextualize the results.
Synalpheus hoetjesi Hultgren, Macdonald, & Duffy 2010
Creators: name: Anker, Arthur
name: Pachelle, Paulo P. G.
name: Grave, Sammy De
name: Hultgren, Kristin M.
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Alpheidae
Synalpheus
Synalpheus hoetjesi

description: Synalpheus hoetjesi Hultgren, Macdonald, & Duffy 2010
 Synalpheus hoetjesi Hulgren, Macdonald, & Duffy 2010: 231, figs 3–9, Pl. 4B–D; Hultgren et al. 2011: 6; Hultgren & Duffy 2011: appendix 1.
 Material examined: Panama: 1 male, USNM 1187899, Bocas del Toro, Cayo Solarte, Hospital Point, in Lissodendoryx colombiensis, 1–3 m, coll. K. Hultgren, 15.06.2009 [fcn P09-2003]; 22 males, 3 ov. females, USNM, Bocas del Toro, Cayo Solarte, Hospital Point, in Lissodendoryx colombiensis, 1–3 m, coll. K. Hultgren, 15.06.2009 [fcn P09-1202, 1205, 1801-2, 1805, 1907] (specimens currently used for molecular studies).
 Description. For original description and illustrations see Hultgren et al. (2010).
 Size range. Males, 2.7–5.2 mm cl; females, 3.6–6.2 mm cl.
 Colour in life. Semitransparent with brown major chela; females with dull olive to orange ovaries and brownish-orange to yellowish-orange embryos (colour photograph in Hultgren et al. (2010).
 Type locality. Caracas Baai, Curaçao.
 Distribution. Western Atlantic: Caribbean Sea: Curaçao, Panama [Bocas del Toro], Barbados (Hultgren et al. 2010, 2011; Hultgren and Duffy 2011; present study; see map in Fig. 52).
 Ecology. Shallow coral reefs; depth range 1–6 m; obligate associate of demosponges, including Hyattella intestinalis (in Barbados and Curacao), Agelas clathrodes (in Barbados), Xestospongia spp. (in Curacao), and Lissodendoryx colombiensis (in Panama); typically in male-female pairs.
 Remarks. In Bocas del Toro, Panama, S. hoetjesi co-occurs with the morphologically very similar and phylogenetically closely related S. dardeaui (see above), S. ul and S. yano (see below). These four species are sometimes found in the same host sponge (e.g., large Lissodendoryx colombiensis) and may not be easy to distinguish from each other by morphology alone. In addition, S. hoetjesi appears to be variable in the presence or absence of a blade on the scaphocerite, a feature important in the distinction of species in this species complex. In most cases, S. hoetjesi can be separated from S. dardeaui and S. yano by the rounded posterior corner of the male second pleura (acute in S. dardeaui and angular in S. yano); from S. dardeaui by the shorter orbital teeth and the minor chela dactylus ending in two unequal teeth, distal much stronger than subdistal (vs. ending in two subequal, rod-shaped teeth in S. dardeaui); and from S. ul by the relative width of stout spiniform setae on the posterior margin of the telson (lateral clearly stouter than mesial in S. hoetjesi, lateral and mesial subequal in thickness in S. ul).
description: Published as part of Anker, Arthur, Pachelle, Paulo P. G., Grave, Sammy De & Hultgren, Kristin M., 2012, 3598, pp. 1-96 in Zootaxa 3598 (1) on page 57, DOI: 10.11646/zootaxa.3598.1.1, http://zenodo.org/record/5694454
Driven Liouville-von Neumann Equation for Quantum Transport and Multiple-Probe Green's Functions
Creators: name: Ramírez, Francisco
name: Dundas, Daniel
name: Sánchez, Cristián G.
name: Scherlis, Damian A.
name: Todorov, Tchavdar N.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The so called Driven Liouville-von Neumann equation is a dynamical formulation to simulate a voltage bias across a molecular system and to model a time-dependent current in a grand-canonical framework. This approach introduces a damping term in the equation of motion that drives the charge to a reference, out of equilibrium density. Originally proposed by Horsfield and co-workers, further work on this scheme has led to different coexisting versions of this equation. On the other hand, the multiple-probe scheme devised by Todorov and collaborators, known as the hairy-probes method, is a formal treatment based on Green's functions that allows to fix the electrochemical potentials in two regions of an open quantum system. In this article, the equations of motion of the hairy probes formalism are rewritten to show that, under certain conditions, they can assume the same algebraic structure as the Driven Liouville-von Neumann equation in the form proposed by Morzan et al. [J. Chem. Phys. 2017, 146, 044110]. In this way, a new formal ground is provided for the latter, identifying the origin of every term. The performance of the different methods are explored using tight-binding time-dependent simulations in three trial structures, designated as ballistic, disordered, and resonant models. In the context of first-principles Hamiltonians the Driven Liouville-von Neumann approach is of special interest, because it does not require the calculation of Green's functions. Hence, the effects of replacing the reference density based on the Green's function by one obtained from an applied field are investigated, to gain a deeper understanding of the limitations and the range of applicability of the Driven Liouville-von Neumann equation.
description: 40 pages, 15 figures
Spogostylum candidum Sack 1909
Creators: name: Arabyat, Sahar
name: Katbeh-Bader, Ahmad
name: Greathead, David
Publisher: name: Zenodo
Year: 2004
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Bombyliidae
Spogostylum
Spogostylum candidum

description: Spogostylum candidum (Sack, 1909)
Material: Two specimens: Jarash 21.V.2000 (1ɗ); Wadi Shuqayq 24.IX.2002 (1ɗ). Distribution: Oriental: Pakistan. Palaearctic: Egypt, Iran, Turkey, United Arab Emirates.
description: Published as part of Arabyat, Sahar, Katbeh-Bader, Ahmad & Greathead, David, 2004, The bee flies (Diptera: Bombyliidae) of Jordan, pp. 1-48 in Zootaxa 654 on page 28, DOI: 10.5281/zenodo.158701
A Supersymmetric Standard Model of Inflation with Extra Dimensions
Creators: name: Bastero-Gil, M.
name: Di Clemente, V.
name: King, S. F.
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Astrophysics (astro-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We embed the supersymmetric standard model of hybrid inflation based on the next-to-minimal superpotential term $λNH_uH_d$ supplemented by an inflaton term $κϕN^2$, into an extra-dimensional framework, in which all the Higgs fields and singlets live in the bulk, while all the matter fields live on the brane. All the parameters of the effective 4d model can then be naturally understood in terms of a fundamental (``string'') scale $M_*\sim 10^{13}$ GeV and a brane supersymmetry breaking scale $10^{8}$ GeV, of the same order as the height of the inflaton potential during inflation. In particular the very small Yukawa couplings $λ\sim κ\sim 10^{-10}$ necessary for the model to solve the strong CP problem and generate the correct effective $μ$ term after inflation, can be naturally understood in terms of volume suppression factors. The brane scalar masses are naturally of order a TeV while the bulk inflaton mass is naturally in the MeV range sufficient to satisfy the slow roll constraints. Curvature perturbations are generated after inflation from the isocurvature perturbations of the supersymmetric Higgs as discussed in a companion paper.
description: Version to appear in PRD. Latex, 1+17 pages, style file included
title: Визуальная обратная связь по опорной реакции в клинике и исследованиях
Creators: name: Крикленко, Елена
Publisher: name: Новгородский государственный университет имени Ярослава Мудрого (НовГУ)
Year: 2021

description: В кратком обзоре представлены современные представления о применении методик биологической обратной связи по опорной реакции в лечении и реабилитации пациентов с заболеваниями различной этиологии, а также приведены примеры фундаментальных исследований с применением силовых платформ и визуальной БОС по опорной реакции.
Additional file 1 of A cross-country qualitative study on contraceptive method mix: contraceptive decisionmaking among youth
Creators: name: Ouma, Lynette
name: Bozkurt, Burcu
name: Chanley, Jill
name: Power, Christine
name: Kakonge, Ronald
name: Oluwatosin C. Adeyemi
name: Ramya Jawahar Kudekallu
name: Madsen, Elizabeth Leahy
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 1. Study Regions in Each Country. Detailed information on study regions in each country and reason for selection.
Type-II multiferroic Hf$_{2}$VC$_{2}$F$_{2}$ MXene monolayer with high transition temperature
Creators: name: Zhang, Jun-Jie
name: Lin, Linfang
name: Zhang, Yang
name: Wu, Menghao
name: Yakobson, Boris I.
name: Dong, Shuai
Publisher: name: arXiv
Year: 2019
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Achieving multiferroic two-dimensional (2D) materials should enable numerous functionalities in nanoscale devices. Until now, however, predicted 2D multiferroics are very few and with coexisting yet only loosely coupled (type-I) ferroelectricity and magnetism. Here, a type-II multiferroic MXene Hf$_{2}$VC$_{2}$F$_{2}$ monolayer is identified, where ferroelectricity originates directly from its magnetism. The noncollinear Y-type spin order generates a polarization perpendicular to the spin helical plane. Remarkably, the multiferroic transition is estimated to occur above room temperature. Our investigation should open the door to a new branch of 2D materials for pursuit of intrinsically strong magnetoelectricity.
description: 4 figures