cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Brefeldin A variant via combinatorial screening acts as an effective antagonist inducing structural modification in EPAC2
Creators: name: Uttarkar, Akshay
name: Niranjan, Vidya
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine

description: Drug discovery can be impactful with re-purposing and combinatorial strategies leading to potential pharmaceutical outputs. EPAC isoform inhibition is crucial in vascular functions to prevent chronic inflammation leading to hypertension and myocardial infarction. Current drugs fail to induce a conformational change in EPAC isoforms. An attempt utilising brefeldin A, a natural inhibitor was subjected to a substitution of 3 side-chain groups with 43 fragments via combinatorial strategy. This resulted in generating a library of 79,507 brefeldin A variants. High throughput virtual screening yielded 68,043 variants followed by precision docking providing 117 lead-like brefeldin A variants. The best-docked variant labelled as BrefA1 has increased binding efficiency of −10.841 kcal/mol compared to cAMP2 (positive control) with −10.692 kcal/mol. Simulation studies up to 200 ns of complex lead to re-orientation of target tertiary structure resulted in RMSD change of 30.221 Å, suggesting the EPAC2 structure modification leading to unavailability of RAS-GEF domain and its interaction with Rap1b. To identify the new conformation of EPAC2 single domain antibody was designed to bind specifically to re-structured EPAC2 for potential identification over the native target structure. The resulting Brefeldin variant can be potentially labelled as the most effective antagonist against EPAC2 which induces theoretically irreversible structural re-conformation.
Antecerococcus citri Lambdin, comb. nov.
Creators: name: Chris J. Hodgson
name: Douglas J. Williams
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Cerococcidae
Antecerococcus
Antecerococcus citri

description: Antecerococcus citri (Lambdin), comb. nov.
Cerococcus citri Lambdin 1986: 369 –371.
Type details. CHINA, Quarantine material at Mt. Shasta, Shasta Co,, California, Jiangsu, Taichow (Taizhou), on chinese unshiu orange (Citrus unshiu - Rutaceae), 17.xii.1982, C. Silva. Depositories: IEBC, China: Holotype adf (not checked). Note that Lambdin (1986) states that he deposited the following in USNM but they are not there (Miller, pers. comm.): CHINA, Taichow (Taizhou), on Citrus sp., -. v.1935, F.G. Chen: 2/5 paratype adff.
Comment. No material of this species has been seen during this study. However, it is clear from Lambdin’s (1986) description and illustration that this is an Antecerococcus species as it has the following combination of character-states: (i) pairs of long fleshy setae on dorsum of each anal lobe; (ii) large 8-shaped pores in a band of 8– 14 pores along margin of posterior abdominal segments; (iii) each anal lobe has a setose seta on ventral surface near apex; and (iv) strong setose setae absent along inner margins of each anal lobe. According to Lambdin (1986), the adult female is characterised also by: (i) presence of large 8-shaped pores in swirls throughout dorsum anterior to cribriform plates; (ii) five sizes of 8-shaped pores on dorsum; (iii) smallest 8-shaped pores present in apices of each stigmatic band; (iv) cribriform plates in a submedial group of 2–4 plates on each side of abdominal segment IV; (v) leg stubs present; (vi) posterior stigmatic pore bands bifurcated; (vii) multilocular disc-pores present in bands across all abdominal segments and laterad to each metathoracic leg-stub; (viii) stigmatic pore bands narrow, with few spiracular disc-pores; and (ix) largest 8-shaped pores appearing to extend onto venter.
The adult female of A. citri falls within Group D in the key to species of Antecerococcus, and keys out close to the Afrotropical species A. oumeensis and A. thesii.
description: Published as part of Chris J. Hodgson & Douglas J. Williams, 2016, (Hemiptera: Sternorrhyncha, Coccomorpha) with particular reference to species from the Afrotropical, western Palaearctic and western Oriental Regions, with the revival of Antecerococcus Green and description of a new genus and fifteen new species, and with ten new synonomies, pp. 1-175 in Zootaxa 4091 (1) on pages 130-131, DOI: 10.11646/zootaxa.4091.1.1, http://zenodo.org/record/265332
Simocephalus (Simocephalus) mixtus Sars 1903
Creators: name: Dadykin, Ivan A.
name: Sinev, Artem Y.
name: Gu, Yangliang
name: Han, Bo-Ping
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Branchiopoda
Diplostraca
Daphniidae
Simocephalus
Simocephalus mixtus

description: Simocephalus (Simocephalus) mixtus Sars, 1903
(fig. 5 H–M).
A common phytophilous species inhabiting lotic waterbodies of any type in Hunan and Hubei, is abundant in both spring and autumn. Few ephippial females were found in spring in a lake (S24). A cosmopolitan species found in North Eurasia, East Asia, North Africa and North America. In China S. mixtus was recorded in Heilongjiang Province only, but not in the central part of the country (Xiang et al. 2015). However, the species could be misidentified as the widely distributed S. vetuloides Sars, 1898. For a description see Orlova-Bienkowskaja, 2001.
description: Published as part of Dadykin, Ivan A., Sinev, Artem Y., Gu, Yangliang & Han, Bo-Ping, 2023, Spring and autumn fauna of Cladocera (Crustacea: Branchiopoda) in the center of East Asia plain: Hunan and Hubei Provinces of China, pp. 1-25 in Zootaxa 5380 (1) on page 11, DOI: 10.11646/zootaxa.5380.1.1, http://zenodo.org/record/10212806
Ocodoma providens
Creators: name: Jerdon, T. C.
Publisher: name: Zenodo
Year: 1851
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Ocodoma
Ocodoma providens

description: 8. Ocodoma providens. (Sykes)?
Worker about 1 / 7 th of an inch long; head somewhat ovate bulging lightly at the sides, and narrowed behind, notched posteriorly and with two points, rough and granulous; eyes moderate, central, thorax slightly grooved with two small spines on its posterior angles; first abdominal pedicle pointed, second longer, broader and rounded; Warrior with jaws pointed and finely toothed; thorax very rough; length 1 / 4 inch, head large, otherwise similar.
I am by no means certain if this be Sykes' species or not, and, indeed, without actual comparison, it would be very difficult to decide, so similar are the general features of these small Ants, of which I possess four very closely allied species from Southern India, and have only collected these from two or three localities, so that many other allied species may still exist.
The habits and manners of all are Very similar. They live under ground, making for their size a large series of excavations. Their common food I suspect to be animal matter, dead insects, & c. & c,, which at all events they take readily, but they also carry of large quantities df seeds of various kinds, especially the small grass seeds and, as every gardener knows to his cost, more especially garden seeds. They will take off cabbage, celery, radish, carrot and tomato seeds, but are particularly partial to the light lettuce seeds, and in some gardens, unless the pots in which they are sown be suspended, or otherwise protected, the whole of the seeds sown will be removed in one night. I have also had many packets of seeds (especially lettuce) in my room completely emptied before I was aware that the Ants had discovered them. I do not know, how-ever, if they eat them or feed their larvre on them, though for what other purpose they carry them off I could not divine. I have often observed them bring the seeds outside their holes, as recorded by Col. Sykes, and this I think generally at the close of the rainy season, but in some cases I had reason to believe that it was merely the husks, of which I have seen quite heaps, and that the Ants did not take them back to their nests. If any of the forementioned seeds be sown out at once in a bed, most likely in the morning you will find the surface, of the whole spot covered over with little ridges, the works of these creatures, and the few seeds that perhaps remain, dug all round, and being carried off, sometimes above ground, at other times under ground. Their galleries and sub-terranean passages are often very extensive, and it is no easy matter [[...]]] down to their nest to see what becomes of the seeds. I have [[...]] procured the male or female of this species.
description: Published as part of Jerdon, T. C., 1851, A catalogue of the species of ants found in southern India., pp. 103-127 in Madras Journal of Literature and Science 17 on page 108
Artificial Intelligence in Health Professions Education assessment: AMEE Guide No. 178
Creators: name: Masters, Ken
name: MacNeil, Heather
name: Benjamin, Jennifer
name: Carver, Tamara
name: Nemethy, Kataryna
name: Valanci-Aroesty, Sofia
name: Taylor, David C. M.
name: Thoma, Brent
name: Thesen, Thomas
Publisher: name: Taylor & Francis
Year: 2025
Subjects: Medicine
Biological Sciences not elsewhere classified
Developmental Biology
Cancer
Science Policy
Mental Health
Hematology

description: Health Professions Education (HPE) assessment is being increasingly impacted by Artificial Intelligence (AI), and institutions, educators, and learners are grappling with AI’s ever-evolving complexities, dangers, and potential. This AMEE Guide aims to assist all HPE stakeholders by helping them navigate the assessment uncertainty before them. Although the impetus is AI, the Guide grounds its path in pedagogical theory, considers the range of human responses, and then deals with assessment types, challenges, AI roles as tutor and learner, and required competencies. It then discusses the difficult and ethical issues, before ending with considerations for faculty development and the technicalities of AI acknowledgment in assessment. Through this Guide, we aim to allay fears in the face of change and demonstrate possibilities that will allow educators and learners to harness the full potential of AI in HPE assessment.
Exploring the molecular level interaction of Xenoestrogen phthalate plasticisers with oestrogen receptor alpha (ERα) Y537S mutant
Creators: name: Raha, Fahmida Khanam
name: Hasan, Jahid
name: Ali, Ackas
name: Fakayode, Sayo O.
name: Halim, Mohammad A.
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Physical Sciences not elsewhere classified
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Computational Biology

description: Phthalates are Endocrine Disrupting plasticisers (EDCs) which can compete with natural oestrogens and modify ER’s biological responses. Gene expression experiments show oestrogenic and anti-oestrogenic effects of phthalates on ERα. Phthalates have been examined for anti-oestrogenic activities against a somatic mutation of ERα, Y537S, a key mutation in ER-positive breast cancer cells. Here, we examined the binding affinity, dynamic characteristics, and quantitative structure–activity connection of certain phthalates against a constitutively active somatic mutant ERα (Y537S). We compared their molecular dynamic and energetic properties with 4-Hydroxytamoxifen (4OHT) and Thioridazine. Using Molecular Dynamics Simulation and protein structure analyses, we found that ligand binding altered the hydrophobic core and phthalates affected the secondary structure of Y537S ERα but did not affect H11, H11–H12 loop, H12, or antiestrogen-resistant areas. The phthalate stabilised the mutant ERα agonist structure. Compared to the Apo conformation, the Phthalate-bound H11–H12 loop and H12 displayed less fluctuation and movement. This research shows that phthalates can impair ER+ positive breast cancer cells by maintaining the agonist conformation rather than demonstrating anti-oestrogenic actions. Principal component analysis (PCA) and partial-least-square (PLS) regression were used to further understand phthalate ligands’ binding to ER LBD. PLS model accurately predicted phthalates ligands’ binding energy (>94%).
Evaluation of the vulnerability of water from public supply wells in New Jersey to contamination by pesticides
Creators: name: Vowinkel, E.F.
name: CLawges, R.M.
name: Uchrin, C.G.
Publisher: name: No Publisher Supplied
Year: 1994

description: The vulnerability of ground water from approximately 2,300 public supply wells in New Jersey to contamination by pesticides was evaluated by use of a geographic information system (GIS) in conjunction with a multivariate statistical model and a numerical rating system. This GIS database, multivariate statistical model, and numerical rating model can provide water managers with the basis to waive the requirement that water samples from those water supply wells determined to have low vulnerability to be analyzed for pesticides.
Summary of thte Department of Environmental Protection and Energy land use activities study
Creators: name: Eagleton Institute Of Politics
Publisher: name: No Publisher Supplied
Year: 1991

description: The objective of this study is to illuminate the regulatory processes within the land use programs and the DEPE and other state agencies which regulate land use. It also seeks to establish a baseline of information about the awareness and knowledge of the State Development and Redevelopment Plan among DEPE land use regulatory staff and managers. The study identifies the: 1. procedural steps of these regulatory programs; 2. standards and criteria used in making permitting decisions; 3. level and nature of interaction among the various regulatory programs; and 4. potential areas of conflict and overlap among the various programs.
Antecerococcus echinatus Wang & Qiu, comb. nov.
Creators: name: Chris J. Hodgson
name: Douglas J. Williams
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Cerococcidae
Antecerococcus
Antecerococcus echinatus

description: Antecerococcus echinatus (Wang & Qiu), comb. nov.
Cerococcus echinatus Wang & Qiu 1986: 302 –305.
Phenacobryum echinatus; Tang & Hao 1995: 237. Change of combination.
Type details. CHINA, Sichuan, on Alangium platanifolium (Cornaceae), 25.v.1974, T.C. Wang. Depository: Institute of Zoology, Academia Sinica, Beijing, China: holotype adf + 2 paratype adff (not checked).
Comment. No material of this species has been seen during this study. In their English summary, Wang and Qiu (1986) described this species as follows: “This species is closely allied to C. stellatus (Maskell). They can be separated by the following unique characteristics: [A. echinatus has] 1) a few large 8-shaped pores around spiracles; 2) bilocular pores arranged in a submarginal band of the ventral surface; 3) the pores of the spiracular furrows clearly subdivided into large and small pores; 4) at base of each antenna without quinquelocular discpores; 5) stigmatic [probably refers to spiracles] rigid, densely chitinous and with a few quinquelocular discpores.” Wang and Qiu’s illustration is too poor to be able to see the significant anal lobe structures but, it is here considered to be a typical Antecerococcus species based on its similarity to A. stellatus (Maskell).
Based on Wang and Qiu’s (1986) description, the adult female of A. echinatus falls within Group C in the key to species of Antecerococcus and keys out close to A. bryoides from the Pacific area and A. stellatus from Australia.
description: Published as part of Chris J. Hodgson & Douglas J. Williams, 2016, (Hemiptera: Sternorrhyncha, Coccomorpha) with particular reference to species from the Afrotropical, western Palaearctic and western Oriental Regions, with the revival of Antecerococcus Green and description of a new genus and fifteen new species, and with ten new synonomies, pp. 1-175 in Zootaxa 4091 (1) on pages 131-132, DOI: 10.11646/zootaxa.4091.1.1, http://zenodo.org/record/265332
Paraphysomonas vulgaris subsp. brevispina Scoble et Cavalier-Smith
Creators: name: Kapustin, Dmitry A.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Chromista
Ochrophyta
Chrysophyceae
Synurales
Paraphysomonadaceae
Paraphysomonas
Paraphysomonas vulgaris
Paraphysomonas vulgaris ssp. brevispina scoble et cavalier-Smith

description: 16. Paraphysomonas vulgaris ssp. brevispina Scoble et Cavalier-Smith
Kabardino-Balkarian Republic (Prokina & Philippov 2021).
Remark. This record was not confirmed with EM micrographs.
description: Published as part of Kapustin, Dmitry A., 2024, An updated checklist of the silica-scaled chrysophytes from Russia, pp. 165-193 in Phytotaxa 669 (3) on page 167, DOI: 10.11646/phytotaxa.669.3.1, http://zenodo.org/record/14519547
Waterfront Public Access Guide for Barnegat Bay Watershed
Creators: name: No Name Supplied
Publisher: name: Not given
Year: 1995

description: The purpose of this document is to provide users with a guide to the waterfront public access opportunities in the Barnegat Bay watershed. The Barnegat Bay, located in Ocean County, New Jersey, is a 75 square mile ecosystem. This environmentally sensitive estuary is replete with aquatic vegetation, shellfish beds, finfish habitats, waterfowl nesting grounds, and spectacular vistas. Much of the water in the Barnegat Bay drains from a watershed area of approximately 450 miles, encompassing most of Ocean County. Within this context, it is important that the many residents and visitors beable to enjoy access to the rich water-based resources of the watershed. By using this guide you will be able to determine the location of beaches, docks, piers,parks, etc., and the amenities they offer such as telephones, restrooms and boat rental, to name a few.
Moina micrura Kurz 1874
Creators: name: Dadykin, Ivan A.
name: Sinev, Artem Y.
name: Gu, Yangliang
name: Han, Bo-Ping
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Branchiopoda
Diplostraca
Moinidae
Moina
Moina micrura

description: Moina micrura Kurz, 1874.
A common planktonic species occurring in any types of lotic water bodies, it could inhabit temporary waters. Males and ephippial females occurred in both spring (a pond S15), and autumn (rice field A28, lake A34). M. micrura is a cosmopolitan species complex (Petrusek et al. 2004), rather common in East and South-East Asia, including China (Xiang et al. 2015). For more information, see Goulden (1968).
description: Published as part of Dadykin, Ivan A., Sinev, Artem Y., Gu, Yangliang & Han, Bo-Ping, 2023, Spring and autumn fauna of Cladocera (Crustacea: Branchiopoda) in the center of East Asia plain: Hunan and Hubei Provinces of China, pp. 1-25 in Zootaxa 5380 (1) on page 11, DOI: 10.11646/zootaxa.5380.1.1, http://zenodo.org/record/10212806
Insight into the structural requirements of antimicrobial peptides by multiple validated 3D-QSAR approaches
Creators: name: Wang, Fangfang
name: Zhang, Ke
name: Zhou, Bo
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Developmental Biology
subject: Virology

description: Antibacterial peptides (AMPs) are a kind of peptide material produced by the organism to resist the invasion of exogenous pathogens. Several antimicrobial peptides in different structures have been reported. To elucidate the relationship between structure and activity. A molecular modelling study on the nonapeptides using three-dimensional quantitative structure–activity relationship (3D-QSAR) was carried out. Comparative molecular field analysis (CoMFA) and comparative molecular similarity indices analysis (CoMSIA) methods were employed for the identification of significant features of antimicrobial peptides. CoMFA and CoMSIA models all gave best parametric results (Rcv2 = 0.563, Rpred2 = 0.654 for CoMFA; Rcv2 = 0.656, Rpred2 = 0.8045 for CoMSIA), which suggested that the derived models are highly robust and predictive. In addition, the derived contour maps would provide structural features to improve binding activity, and indicated that steric, electrostatic, and hydrophobic fields play vital roles in improving the activity. The derived models and information may help to provide an insight into the structural requirements for more potent peptides and facilitate the design and optimisation of novel antimicrobial peptides with promising enhanced activity. Furthermore, some potential candidate antimicrobial peptides have been proposed.
Ocodoma diffusa Jerdon, 1851, N. S.
Creators: name: Jerdon, T. C.
Publisher: name: Zenodo
Year: 1851
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Ocodoma
Ocodoma diffusa

description: 9. Ocodoma diffusa, N. S.
Worker about 1 / 8 th of an inch long; head somewhat oval, nearly smooth, with a few scattered graundes, slightly emarginate behind; eyes moderate size; thorax deeply grooved, with two small spines pos-teriorly: first abdominal pedicle very pointed, conic; second rounded of equal height: head, thorax and legs rufous; abdomen brown.
Warrior 1 / 4 th inch long, jaw strongly toothed, head large, much striated, deeply notched behind; thorax more deeply grooved and tubercled; otherwise as in the Worker. This species appears to be spread over most of India, and has similar habits to the last.
description: Published as part of Jerdon, T. C., 1851, A catalogue of the species of ants found in southern India., pp. 103-127 in Madras Journal of Literature and Science 17 on page 109
Virtual screening of lead compounds for the treatment of Alzheimer’s disease based on multi-target strategy
Creators: name: Li, Ruo-yu
name: Xie, Jia-li
name: Meng, Dan
name: Deng, Ping
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Neuroscience
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences

description: Alzheimer’s disease (AD) is a neurological illness that develops over time. Although the disease’s origin and pathophysiology remain unclear, acetylcholinesterase (AChE) has been identified as a potential target. Other targets including glycogen synthase kinase 3β (GSK-3β), β-secretase (BACE-1), and others, are also being investigated as possible therapeutic targets. In this work, compounds from the DrugBank and ZINC subset drug-like databases were screened in silico using ligand-based pharmacophore filtering and molecular docking. Two multi-target compounds, ZINC-27 and ZINC-1-4, were discovered utilising a combination of compound profiling, ADMET prediction, and structural modification, which can inhibit AChE, GSK-3β, and BACE-1. Finally, the trustworthiness of the virtual screening findings was confirmed using molecular dynamics simulation, MM-PBSA binding free energy calculation, and principal component analysis. In conclusion, the multi-approach study revealed that ZINC-27 and ZINC-1-4 might be prospective multi-target anti-AD medicines that work concurrently on AChE, GSK-3β, and BACE-1, which merit further investigation.
Integrative network and computational simulation of clinical and genomic data for the identification of mutated EGFR in breast cancer patients for therapeutic targeting using purine analogues
Creators: name: Singh, Jitender
name: Sangwan, Namrata
name: Chauhan, Arushi
name: Avti, Pramod K.
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Cancer

description: EGFR/HER-1, a major oncogene, is frequently activated in breast cancers due to rear mutational events, which reduces the patient's survival rate, hence is a significant target for therapeutics. A total of 5699 clinical samples data was analysed at the genomic and proteomic level, revealing 4% genetic alterations in EGFR, with the highest number of missense mutations at D916N in exon 20. The Kaplan–Meier plots indicated that the unaltered group's overall survival rate was higher than the altered group. Molecular network analysis shows 10 probable partners associated with EGFR involved in breast cancer. For identifying the specific drugs to target unaltered/altered EGFR, high throughput virtual screenings (HTVS) of purines analogues using Molecular docking and dynamic (MD) simulation were performed. Docking studies shortlist the top three lead compounds (of 619 screened) based on minimum free energy for each (ΔG = −7.6 to −8.0 kcal/mol.) target. Residues Thr854 and Asp855 of both unaltered/altered EGFR form strong interactions with the top three compounds. MD simulations showed only one compound-PubChem-id-113801230, which had good interaction with both altered and unaltered EGFR with drug-likeliness as assessed by ADME properties. Therefore, compound-113801230 can effectively and selectively target unaltered/altered EGFR as an effective breast cancer therapeutic drug.
Final, phase III report for analytical & oceanographic studies of the content & fate of the Ciba-Geigy ocean outfall
Creators: name: Battelle Ocean Sciences
Publisher: name: No Publisher Supplied
Year: 1987

description: In July 1985, New Jersey awarded a research contract to Battelle Ocean Science and Technology Department to conduct analytical and oceanographic studies of the content and fate of effluent discharged to the Atlantic Ocean off the coast of New Jersey by Ciba-Geigy. Phase III consisted of a second field sampling and data collection to follow the progress of the effluent plume and analysis of the collected samples for identification of effluent constituents.
Study of bay, inlet and nearshore marine sedimentation
Creators: name: Charlesworth, Lloyd James
Publisher: name: No Publisher Supplied
Year: 1968

description: This is a reproduction of the original report which is in two volumes dated 1968 of which Volume I is the main report and Volume II contains the appendices. For convenience, each volume has been assembled in three parts with the Plates as a separate part or a total of 7 parts. This is part 5.
Ilyocryptus raridentatus Smirnov 1989
Creators: name: Dadykin, Ivan A.
name: Sinev, Artem Y.
name: Gu, Yangliang
name: Han, Bo-Ping
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Branchiopoda
Diplostraca
Ilyocryptidae
Ilyocryptus
Ilyocryptus raridentatus

description: Ilyocryptus cf. raridentatus Smirnov, 1989
(fig. 6A–D).
A rare benthic species associated with muddy substrates, found in Hunan in a lake (A8) and in a pond (S32). We found only first instar females which does not retain valves from previous molts. Each seta of posterior margin of the valves bears a strong lateral spine. For detailed description see Jeong et al. (2012). Ilyocryptus raridentatus s. str. was described from Australia, morphologically similar populations were recorded from Korea, China and South-East Asia, but their identity with Australian species was not confirmed (Jeong et al. 2012).
description: Published as part of Dadykin, Ivan A., Sinev, Artem Y., Gu, Yangliang & Han, Bo-Ping, 2023, Spring and autumn fauna of Cladocera (Crustacea: Branchiopoda) in the center of East Asia plain: Hunan and Hubei Provinces of China, pp. 1-25 in Zootaxa 5380 (1) on page 11, DOI: 10.11646/zootaxa.5380.1.1, http://zenodo.org/record/10212806
Profile of the Barnegat Bay
Creators: name: Rogers, Golden
Publisher: name: Not given
Year: 1990

description: This profile of the Barnegat Bay is a summary of available information that describes the health and use of the Bay. The profile has been designed to accomplish two objectives: 1. To summarize characteristics and trends in Bay resources over the past 10-15 years and, if possible, to document the impacts of development on estuarinesystems. 2. To provide a basis for land use and environmental management recommendations and recommendations for further study in the Barnegat Bay Study Area.Most of the information contained in this Profile has been taken from published documents or other "ready-to-use" sources. A comprehensive list of references is provided with each section. Many of the maps in this profile have been generated using a Geographic Information System (GIS). Some of the data that appears in map form was taken from NJDEP's GIS. Additional data collected for this study have been digitized and will be entered into NJDEP's GIS.
New Jersey Marine Mammal and Sea Turtle Conservation Workshop Proceedings
Creators: name: No Name Supplied
Publisher: name: Not given
Year: 2006

description: The Endangered and Nongame Species Program, within the New Jersey Department of Environmental Protection’s Division of Fish and Wildlife, convened the New Jersey Marine Mammal and Sea Turtle Conservation Workshop at the Richard Stockton College of New Jersey on April 17-19, 2006. The purpose of the workshop was to develop the knowledge base necessary to guide the state’s marine endangered resource conservation and management programs by identifying which species the state should focus on and what actions it should take to conserve them.  Thirty-nine categories of threats, ranging from fishing gear of many types to sounds and epizootics were evaluated for their impact on the focal species in New Jersey waters. The highest ranking threats across all species were gillnets, epizootics, recreational boat strike, construction, fixed gear traps and pots, and persistent marine debris.  Proceedings contain information about the workshop such as agenda and participants, threats assessment, recommended conservation actions, and species summaries.
An investigation of two marinas as sources of pollution in Barnegat Bay, N.J.
Creators: name: Boettcher, Helene
name: Moser, Fredrika
name: Ruppel, Bruce
name: Scro, Bob
Publisher: name: Not given
Year: 1988

description: The New Jersey Department of Environmental Protection (NJDEP) is concerned about the potentially harmful impact on Barnegat Bay caused by marinas, dockominiurns, and private docking facilities. In order to respond appropriately and competently to the increasing numbers of applications for marina expansions and new marina development, the NJDEP has initiated studies to assess the impact of marinas on water quality within the marina and in the adjacent bay. This report represents NJDEP Division of Science and Research 1988 investigation of two major pollutants, bacteriological contamination and metal contamination, believed to flow from marinas and addresses the impact these pollutantsmay have on Barnegat Bay.
Preliminary textural and mineralogic analyses of Vibracore samples collected between Absecon and Barnegat Inlets, New Jersey
Creators: name: Uptegrove, Jane
name: Grosz, Andrew E.
name: Maharaj, Susan V.
name: Muller, Fredrick L.
name: Muessig, Karl
name: Farnsworth, John
name: Burbanck, George P.
name: Cheung, Tin-Tung
Publisher: name: New Jersey Geological Survey
Year: 1991

description: Textural and mineralogical analyses of 119 samples from 65 vibracores were made in order to assess the sand, gravel and heavy-mineral resource potential of the Inner Continental Shelf offshore from Absecon Inlet to Barnegat Inlet, New Jersey. These data may help delineate areas where more thorough investigation is warranted.The average heavy-mineral content of the vibracore samples is 1.9 weight percent, with a standard deviation of 2.1. The average heavy-mineral content recovered by the techniques of this analysis is 1.2 weight percent, with a standard deviation of 1.1.The economically important heavy minerals, here defined as ihnenite (including altered ihnenite) + rutile + zircon + monazite + aluminosilicates (sillimanite, kyanite, andalusite), comprise on average 1.0 weight percent of the bulk sample with a standard deviation of 0.96. Thirteen samples from eight sites have concentrations of economically important heavy minerals exceeding 2 percent.
Ocodoma diversa Jerdon, 1851, N. S.
Creators: name: Jerdon, T. C.
Publisher: name: Zenodo
Year: 1851
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Ocodoma
Ocodoma diversa

description: 10. Ocodoma diversa, N. S.
Worker about 7 - 48 th of an inch long, head oblong, nearly smooth, emarginate behind; eyes small; jaws triangular, toothed; thorax but slightly grooved and with two longish spines posteriorly; first abdominal pedicle broadly conic, second rounded; head thorax and legs dark marroon, abdomen blackish.
Warrior nearly 1 / 2 inch long, head very large, nearly smoothed, slightly striated; jaws lancet, shaped, entire; eyes small, somewhat advanced, antennas short, otherwise as in the Worker.
I procured this Ant in the Wynaad where it is not uncommon. The difference between the Worker and the Warrior is greater than in any other Indian species.
description: Published as part of Jerdon, T. C., 1851, A catalogue of the species of ants found in southern India., pp. 103-127 in Madras Journal of Literature and Science 17 on pages 109-110
Paraphysomonas acantholepis Preisig & D. J. Hibberd
Creators: name: Kapustin, Dmitry A.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Chromista
Ochrophyta
Chrysophyceae
Synurales
Paraphysomonadaceae
Paraphysomonas
Paraphysomonas acantholepis

description: 17. Paraphysomonas acantholepis Preisig & D.J. Hibberd
Saint Petersburg (Safronova 2014, Voloshko 2017).
description: Published as part of Kapustin, Dmitry A., 2024, An updated checklist of the silica-scaled chrysophytes from Russia, pp. 165-193 in Phytotaxa 669 (3) on page 168, DOI: 10.11646/phytotaxa.669.3.1, http://zenodo.org/record/14519547
Ilyocryptus spinifer Herrick 1882
Creators: name: Dadykin, Ivan A.
name: Sinev, Artem Y.
name: Gu, Yangliang
name: Han, Bo-Ping
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Branchiopoda
Diplostraca
Ilyocryptidae
Ilyocryptus
Ilyocryptus spinifer

description: Ilyocryptus spinifer Herrick, 1882.
A relatively common benthic species found mostly in lakes in autumn. I. spinifer inhabits muddy or clay substrates. The species is distributed worldwide, except for the Palearctic. No evidence of the non-cosmopolitanism of I. spinifer has been found (Kotov & Dumont 2000). The species is common in East Asia, including China (Xiang et al. 2015). For detailed description see Kotov & Dumont (2000) and Kotov et al. (2012) for Far Eastern populations.
description: Published as part of Dadykin, Ivan A., Sinev, Artem Y., Gu, Yangliang & Han, Bo-Ping, 2023, Spring and autumn fauna of Cladocera (Crustacea: Branchiopoda) in the center of East Asia plain: Hunan and Hubei Provinces of China, pp. 1-25 in Zootaxa 5380 (1) on page 13, DOI: 10.11646/zootaxa.5380.1.1, http://zenodo.org/record/10212806
Land-Use Planning and Its Relation to Program Determination – Southern States
Creators: name: Extension Service
Publisher: name: Unknown
Year: 1939
Subjects: Community/Rural/Urban Development
Land Economics/Use
Teaching/Communication/Extension/Profession

description: Content – Texarkana: Tentative Plan of Work (C. L. Chambers) --- Discussion on Land-Use Planning and Its Relation to Program (H. C. Sanders) --- Land-Use Planning as a Basis for Program Development as Related to: Agronomy (L. A. Dhonau) – Forestry C. W. Davis) – Farm Management (W. E. Morgan) --- Discussion on Land-Use Planning as a Basis for Program Development (Jennie Camp) --- Correlating the Activities of the Extension Service (Mildred Horton) --- The Place of the Farm and Home Unit Demonstration in Land-Use Planning and Program Development (D. A. Adams, Harriet Patterson, & Bonnie Goodman) --- What Is the Job of County Extension Agents Today? (W. I. Glass & Etna McGaugh) --- Knoxville: Increasing the Farm Income the Extension Way (J. Lee Smith) --- Land-Use Planning as a Basis for Program Development (C. M. Hampson) --- Correlating the Activities of the Extension Service (P. O. Davis & Lurline Collier) --- What Is the Job of County Extension Agents Today? (John R. Hutcheson & Kate Lee).
description: Group of Papers Presented at Two Regional Conferences -- Texarkana, Texas February 6-7, 1939 -- Knoxville, Tennessee February 9-10, 1939.
Coaching through liminal phases: A qualitative study of graduating medical students’ perceptions of the value of coaching experiences over the course of medical school
Creators: name: Nelson, Sara W.
name: Stack, Nathan R.
name: Boehm, Lauren N.
name: Hayes, Victoria M.
name: Dad, Taimur
name: Blanco, Maria A.
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Mental Health

description: To explore graduating medical students’ insights on the value of coaching experiences during each year of medical school while examining how coaching may support student development at various stages of training. We invited all graduating students who participated in the coaching program from first through fourth year to participate in one 90-minute virtual focus group. We conducted a thematic analysis of all the focus group transcripts using inductive open coding to develop themes. Twenty-three students participated. In the pre-clerkship years, students valued the coaching experience as a support and a conduit through transitioning into becoming a medical student by nurturing reassurance, self-validation, and community building. As medical school progressed into clerkship years, students valued their coaching experience as a source of emotional support to navigate the challenges of transitioning to workplace learning. In the final year, students valued the longitudinal relationship with their coaches for perspective-taking, reflection, and growth as they transitioned to residency while exploring their values and interests and deciding on their specialty. Our study describes the value of providing students with a longitudinal coaching relationship to support medical school transitions while helping students find meaning and growth in these liminal spaces.
Ilyocryptus yooni Jeong, Kotov & Lee 2012
Creators: name: Dadykin, Ivan A.
name: Sinev, Artem Y.
name: Gu, Yangliang
name: Han, Bo-Ping
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Branchiopoda
Diplostraca
Ilyocryptidae
Ilyocryptus
Ilyocryptus yooni

description: Ilyocryptus yooni Jeong, Kotov & Lee, 2012.
A benthic species found in lakes and ponds and rice fields in spring and autumn (localities S19, S22, S29, S32, S35, A14, A15, A34). The first record for Central China. I. yooni prefers shallow vegetated littoral zone (Jeong et al. 2012). The species was recorded from Far East of Russia, Japan, Korea and North China (Jeong et al. 2012), Hainan Island (Sinev et al. 2015) and mountainous regions of Malaysian Borneo (Sinev & Yusoff 2015). For a detailed description Jeong et al. (2012).
description: Published as part of Dadykin, Ivan A., Sinev, Artem Y., Gu, Yangliang & Han, Bo-Ping, 2023, Spring and autumn fauna of Cladocera (Crustacea: Branchiopoda) in the center of East Asia plain: Hunan and Hubei Provinces of China, pp. 1-25 in Zootaxa 5380 (1) on page 13, DOI: 10.11646/zootaxa.5380.1.1, http://zenodo.org/record/10212806
Paraphysomonas amphiplana Wujek
Creators: name: Kapustin, Dmitry A.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Chromista
Ochrophyta
Chrysophyceae
Synurales
Paraphysomonadaceae
Paraphysomonas
Paraphysomonas amphiplana

description: 18. Paraphysomonas amphiplana Wujek
Lake Ladoga (Voloshko & Gavrilova 2001, Voloshko et al. 2002).
description: Published as part of Kapustin, Dmitry A., 2024, An updated checklist of the silica-scaled chrysophytes from Russia, pp. 165-193 in Phytotaxa 669 (3) on page 168, DOI: 10.11646/phytotaxa.669.3.1, http://zenodo.org/record/14519547
Antecerococcus mirandae Lambdin, comb. nov.
Creators: name: Chris J. Hodgson
name: Douglas J. Williams
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Cerococcidae
Antecerococcus
Antecerococcus mirandae

description: Antecerococcus mirandae (Lambdin), comb. nov.
Cerococcus mirandae Lambdin 1987: 100 –102.
Type details. AUSTRALIA, Western Australia, Coolgardie, no host or date, G. Compere.
Note that Lambdin (1987) states that he deposited the holotype adf and some paratypes in ANIC and also 2 paratype slides in USNM. None of these are present in these collections. It is possible that they are present in University of Tennessee Insect Museum, Knoxville.
Comment. No material of this species has been seen during this study. Nonetheless, the presence of: (i) large 8-shaped pores in a line on each side of the posterior abdominal segments, (ii) a well-developed seta ventrally near apex of each anal lobe, (iii) abundant large 8-shaped pores throughout the dorsum, and (iv) the absence of strong setose setae along the inner margin of each anal lobe, indicates that this species belongs to Antecerococcus, as defined here.
The adult female of A. mirandae can be diagnosed by the following combination of character-states: (i) only large 8-shaped pores present throughout dorsum anterior to cribriform plates; (ii) large 8-shaped pores on dorsum in whorls; (iii) a few large 8-shaped pores also present along margins of posterior abdominal segments; (iv) cribriform plates present in a submedial group of two on either side of abdominal segment IV, each with large micropores; (v) leg stubs absent; (vi) posterior stigmatic pore bands bifurcated; (vii) multilocular disc-pores restricted to sparse rows across segments V and VI, and submarginally in VII and VIII; (viii) ventral 8-shaped pores almost as large as those on dorsum, sparse along margins and in transverse bands across abdominal segments, and (ix) multilocular disc-pores with only six loculi.
The adult female of A. mirandae falls within Group C in the key to species of Antecerococcus, close to A. froggatti, also from Australia.
description: Published as part of Chris J. Hodgson & Douglas J. Williams, 2016, (Hemiptera: Sternorrhyncha, Coccomorpha) with particular reference to species from the Afrotropical, western Palaearctic and western Oriental Regions, with the revival of Antecerococcus Green and description of a new genus and fifteen new species, and with ten new synonomies, pp. 1-175 in Zootaxa 4091 (1) on page 133, DOI: 10.11646/zootaxa.4091.1.1, http://zenodo.org/record/265332
Ocodoma affinis Jerdon, 1851, N. S.
Creators: name: Jerdon, T. C.
Publisher: name: Zenodo
Year: 1851
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Ocodoma
Ocodoma affinis

description: 11. Ocodoma affinis, N. S.
Worker 1 / 8 th of an inch long; head nearly square, almost smooth, with only a few striae; eyes nearly medial, smallish; jaws triangu-lar, with two strong teeth at the external angle of the jaw, and two smaller at the internal angle; thorax very slightly grooved, with two curved spines posteriorly, first abdominal pedicle very narrow, long, conic posteriorly, not much raised; second rounded, of equal height, broader; head, legs and thorax rufous; abdomen dusky.
Warrior nearly 7 - 16 th of an inch long; head and jaws striated, eyes very minute, head notched anteriorly; antennae inverted in a deep groove; metathorax elevated; no palpi apparently. This Ant is very common in Malabar; is nearly allied to, but differs from, O. Diversa in the toothed jaws of the Warrior, & c. & c.
description: Published as part of Jerdon, T. C., 1851, A catalogue of the species of ants found in southern India., pp. 103-127 in Madras Journal of Literature and Science 17 on page 110
Assessing the Effects of Development Pressure on Barnegat Bay: Impacts of Marinas on Juvenile Fishes and Crabs
Creators: name: Able, Kenneth W.
name: Wilson, Kim A.
name: Barshaw, Diana E.
Publisher: name: Not given
Year: 1990

description: Shallow-water habitats (eelgrass and unvegetated substrate) in two Barnegat Bay marinas and adjacent control areas were quantitively (sic) sampled from September 1988 through October 1989. During this period 554 samples were collected and over 2200 fish and 8100 decapod crustaceans representing 28 and 13 species respectively were identified. The fauna at all sampling sites were dominated by juvenile fishes that use the estuary as a nursery and juveniles of resident decapod crustaceans. The most obvious sources of variation were seasonal patterns of abundance and habitat specific patterns in species composition, especially for eelgrass (Zostera marina) sites irrespectiveof location or marina effects. Winter flounder (Pseudopleuronectes americanus) and the blue crab (Callinectes sapidus) were chosen for particular attention because of their ecological and economic importancein Barnegat Bay. Both species occurred in Viking Village marina and control sites, but winter flounder never occurred at the Long Quay marina on the western shore of Barnegat Bay. Location had a pronounced effect on the fauna of Viking Village Marina, presumably reflecting itsproximity to Barnegat Inlet. In this preliminary attempt we determined that the secondary impacts of marinas (i.e. resulting from marina operation and use) were not obvious.
Bosmina (Bosmina) longirostris Bor
Creators: name: Dadykin, Ivan A.
name: Sinev, Artem Y.
name: Gu, Yangliang
name: Han, Bo-Ping
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Branchiopoda
Diplostraca
Bosminidae
Bosmina
Bosmina longirostris

description: Bosmina (Bosmina) longirostris (O.F. Müller, 1785).
A common planktonic species being abundant in spring and autumn, inhabits mostly lakes and reservoirs, occurs more rarely in rice fields and ponds. A single male occurred in spring in a pond (S37). A cosmopolitan, predominantly Boreal species (Korovchinsky et al. 2021). For a description see Alonso (1996) and Kotov et al., (2009).
description: Published as part of Dadykin, Ivan A., Sinev, Artem Y., Gu, Yangliang & Han, Bo-Ping, 2023, Spring and autumn fauna of Cladocera (Crustacea: Branchiopoda) in the center of East Asia plain: Hunan and Hubei Provinces of China, pp. 1-25 in Zootaxa 5380 (1) on page 14, DOI: 10.11646/zootaxa.5380.1.1, http://zenodo.org/record/10212806