Additional file 1 of Complete genome sequencing and comparative genomic analyses of Bacillus sp. S3, a novel hyper Sb(III)-oxidizing bacterium
Creators: name: Li, Jiaokun
name: Gu, Tianyuan
name: Li, Liangzhi
name: Wu, Xueling
name: Shen, Li
name: Yu, Runlan
name: Liu, Yuandong
name: Qiu, Guanzhou
name: Zeng, Weimin
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Figure S1. Energy dispersive X-ray spectroscopy (EDS) analysis of Bacillus sp. S3 after the different heavy metal ions exposure: (A) Sb(III); (B) As (III); (C) Cd (II); (D) Cr (VI); (E) Pb (II); (F) Cu (II). Figure S2. COG classification statistics of the Bacillus sp. S3 genome annotation. Figure S3. GO classification statistics of the Bacillus sp. S3 genome annotation. WEGO was used to produce the graph. Figure S4. KEGG classification statistics of the Bacillus sp. S3 genome annotation. Figure S5. Distribution of CAZymes in Bacillus sp. S3. Figure S6. Gene contents of the intact prophages in Bacillus sp. S3 predicted by PHAST. Figure S7. Comparison of G + C contents of these functional genes with those of the average of the entire genomes. (A) arsB_1; (B) arsB_2; (C) arsB_3; (D)arsC. Figure S8. Neighbor-joining phylogenetic tree of concatenated AioB protein sequences derived from Bacillus sp. S3 and other representative species. Bacillus sp. S3 was marked in red blot. Figure S9. Maximum likelihood phylogenetic tree of concatenated AioB protein sequences derived from Bacillus sp. S3 and other representative species. Bacillus sp. S3 was marked in red blot. Figure S10. Phylogenetic tree analysis based on concatenated AioB protein sequences using UPGMA method under p-distance model. Bootstrap values were indicated at each node based on a total of 1000 bootstrap replicates. Bacillus sp. S3 was marked in red blot. Figure S11. Neighbor-joining phylogenetic tree of concatenated ArsB protein sequences derived from Bacillus sp. S3 and other representative species. Bacillus sp. S3 was marked in red blot. Figure S12. Maximum likelihood phylogenetic tree of concatenated ArsB protein sequences derived from Bacillus sp. S3 and other representative species. Bacillus sp. S3 was marked in red blot. Figure S13. Phylogenetic tree analysis based on concatenated ArsB protein sequences using UPGMA method under p-distance model. Bootstrap values were indicated at each node based on a total of 1000 bootstrap replicates. Bacillus sp. S3 was marked in red blot. Figure S14. Neighbor-joining phylogenetic tree of concatenated ArsC protein sequences derived from Bacillus sp. S3 and other representative species. Bacillus sp. S3 was marked in red blot. Figure S15. Maximum likelihood phylogenetic tree of concatenated ArsC protein sequences derived from Bacillus sp. S3 and other representative species. Bacillus sp. S3 was marked in red blot. Figure S16. Phylogenetic tree analysis based on concatenated ArsC protein sequences using UPGMA method under p-distance model. Bootstrap values were indicated at each node based on a total of 1000 bootstrap replicates. Bacillus sp. S3 was marked in red blot. Table S1. COG functional categories of Bacillus sp. S3. Table S2. GO categories of Bacillus sp. S3. Table S3. KEGG categories of Bacillus sp. S3. Table S4. Digital DNA-DNA hybridization (dDDH) values between Bacillus sp. S3 and other Bacillus genomes. Formula I, II and III represented different methods used by GGDC to calculate the similarities. Table S5. Mobile genetic elements predicted in Bacillus genomes by different methods. Table S6. Primers used in RT-qPCR. Table S7. The quality control of clean data. Table S8. The statistical information and of clean data. Table S9. The statistical information of genome sequencing and assembling procedures.