cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
MOESM3 of Robust succinic acid production from crude glycerol using engineered Yarrowia lipolytica
Creators: name: Cuijuan Gao
name: Xiaofeng Yang
name: Huaimin Wang
name: Rivero, Cristina
name: Li, Chong
name: Zhiyong Cui
name: Qingsheng Qi
name: Lin, Carol
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Additional file 3. Table S1. Components of the media in shaking flasks.
Paratrypaea Komai & Tachikawa 2008
Creators: name: Dworschak, Peter C.
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Callianassidae
Paratrypaea

description: Paratrypaea Komai & Tachikawa, 2008
Type species. Callianassa (Trypaea) Bouvieri Nobili, 1904 by original designation. Gender: feminine [erroneously first masculine (under Type species), later feminine (under Etymology) in Komai & Tachikawa, 2008: 36].
Included species. Paratrypaea bouvieri (Nobili, 1904), P. maldivensis (Borradaile, 1904) n. comb. [= P. rectangularis Ngoc-Ho, 1991], Paratrypaea sp. (Hawaii)
Diagnosis (amended from Komai & Tachikawa, 2008). Carapace with dorsal oval; rostrum conspicuous, spiniform; linea thalassinica distinct. Second somite of pleon slightly shorter than sixth somite; third to fifth pleonal somites each with lateral tufts of setae. Telson subquadrate. Ocular peduncle short, flattened dorsoventrally; cornea disk-shaped, subterminal, submedial. Antennular peduncle longer than antennal peduncle. Third maxilliped with merus-ischium operculiform; ischium with crista dentata consisting of row of small spines; propodus and dactylus slender, the latter digitiform; exopod absent. Exopod present on first and second maxillipeds. Single arthrobranch above base of second maxilliped, paired arthrobranchs above base of third maxilliped to fifth pereopods. Chelipeds (first pereopods) greatly dissimilar at least in males, major with broad, marginally denticulate projection on ventral margin or with row of sharp teeth at least in males. Propodus of third pereopod oval, no heel. Propodus of fourth pereopod moderately broad. Fifth pereopod chelate. Male lacking first and second pleopods. Third to fifth pleopods biramous, foliaceus, appendix interna small, stubby, projecting from mesial margin of endopod. Uropodal exopod with dorsal plate bearing thick assemblage of stiff setae posteriorly; endopod also with small dorsal plate.
Remarks. Recently, Sakai (2011) synonymised the genera Paratrypaea and Pestarella Ngoc-Ho, 2003 with Gilvossius Manning & Felder, 1992 on the basis of the absence of male pleopods 1 and 2. This opinion is not followed here as many other morphological features distinguish the genera. A molecular phylogenetic study by Felder & Robles (2009) shows support for earlier generic assignments within the Callianassidae which formed distinct clades, with Paratrypaea on the base of the subfamily Callianassinae, far away from the type species of Gilvossius, G. setimanus (DeKay, 1844), which grouped close to Pestarella tyrrhena (Petagna, 1792) in the same subfamily.
description: Published as part of Dworschak, Peter C., 2012, On the identities of Callianassa bouvieri Nobili, 1904, C. maldivensis Borradaile, 1904, and C. gravieri Nobili, 1905 (Crustacea: Decapoda: Callianassidae): a morphometric approach, pp. 39-56 in Zootaxa 3149 on pages 44-45, DOI: 10.11646/zootaxa.3149.1.2, http://zenodo.org/record/210180
Paragryllus martini Guerin-Meneville 1844
Creators: name: Yong, Sheyla
name: Perez-Gelabert, Daniel E.
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Orthoptera
Haglotettigoniidae
Paragryllus
Paragryllus martini

description: Paragryllus martini Guérin-Méneville, 1844
Rehn, 1909: 221; Otte & Perez-Gelabert, 2009: 673.
Distribution. Grenada, Guadaloupe and Mexico.
Notes. The citation of Rehn (1909) is the only record of this species in Cuba. Hebard (1932: 357) records it from Mexico and together with synonyms from Brazil this would suggest a wide distribution for this species. Its presence in Cuba needs confirmation with new collections.
description: Published as part of Yong, Sheyla & Perez-Gelabert, Daniel E., 2014, Grasshoppers, Crickets and Katydids (Insecta: Orthoptera) of Cuba: an annotated checklist, pp. 401-438 in Zootaxa 3827 (4) on page 431, DOI: 10.11646/zootaxa.3827.4.1, http://zenodo.org/record/228581
Optimized measurement-free and fault-tolerant quantum error correction for neutral atoms
Creators: name: Veroni, Stefano
name: Müller, Markus
name: Giudice, Giacomo
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: A major challenge in performing quantum error correction (QEC) is implementing reliable measurements and conditional feed-forward operations. In quantum computing platforms supporting unconditional qubit resets, or a constant supply of fresh qubits, alternative schemes which do not require measurements are possible. In such schemes, the error correction is realized via crafted coherent quantum feedback. We propose implementations of small measurement-free QEC schemes, which are fault-tolerant to circuit-level noise. These implementations are guided by several heuristics to achieve fault-tolerance: redundant syndrome information is extracted, and additional single-shot flag qubits are used. By carefully designing the circuit, the additional overhead of these measurement-free schemes is moderate compared to their conventional measurement-and-feed-forward counterparts. We highlight how this alternative approach paves the way towards implementing resource-efficient measurement-free QEC on neutral-atom arrays.
description: 17 pages, 10 figures
MOESM1 of Robust succinic acid production from crude glycerol using engineered Yarrowia lipolytica
Creators: name: Cuijuan Gao
name: Xiaofeng Yang
name: Huaimin Wang
name: Rivero, Cristina
name: Li, Chong
name: Zhiyong Cui
name: Qingsheng Qi
name: Lin, Carol
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: Additional file 1: Figure S1. Overview of the metabolic pathways related to succinic acid biosynthesis from glycerol in Y. lipolytica. The conversion of succinic acid to fumarate catalysed by succinate dehydrogenase complex (SDH) should be blocked.
Scapsipedus limbatus Saussure 1877
Creators: name: Yong, Sheyla
name: Perez-Gelabert, Daniel E.
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Orthoptera
Haglotettigoniidae
Scapsipedus
Scapsipedus limbatus

description: Scapsipedus limbatus Saussure, 1877
Zayas, 1976: 85, fig. 78.
Distribution. Madagascar.
Notes. This is not a Caribbean species. There are five specimens in the Zayas collection and 21 specimens in the CZACC collection determined with this name. We believe this is likely a misidentification since S. limbatus is a species from Madagascar. This will be clarified through the actual study of specimens, although a quick comparison with the Caribbean species presented in Otte and Perez-Gelabert (2009) suggests this is a different species.
description: Published as part of Yong, Sheyla & Perez-Gelabert, Daniel E., 2014, Grasshoppers, Crickets and Katydids (Insecta: Orthoptera) of Cuba: an annotated checklist, pp. 401-438 in Zootaxa 3827 (4) on page 431, DOI: 10.11646/zootaxa.3827.4.1, http://zenodo.org/record/228581
Analysis and numerics of the full viscous quantum hydrodynamic system with barrier potential
Creators: name: Thomas, Paul
Publisher: name: Universität Rostock
Year: 2023
Subjects: subject: 510 Mathematics

description: The complete viscous quantum hydrodynamic equations are solved using semigroups. The properties of the mild solution for different initial conditions are studied. The analytical part of the work ends with the presentation of the linearized equation and a stability analysis. In addition, the equations are solved numerically using the continuation method. The algorithm is tested on the isothermal quantum hydrodynamic equations and compared with the literature. The results of the time-dependent problem and a current-voltage characteristic are presented.
Image Compression and Reconstruction Based on Quantum Network
Creators: name: Ji, Xun
name: Liu, Qin
name: Huang, Shan
name: Chen, Andi
name: Wu, Shengjun
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences
subject: I.4

description: Quantum network is an emerging type of network structure that leverages the principles of quantum mechanics to transmit and process information. Compared with classical data reconstruction algorithms, quantum networks make image reconstruction more efficient and accurate. They can also process more complex image information using fewer bits and faster parallel computing capabilities. Therefore, this paper will discuss image reconstruction methods based on our quantum network and explore their potential applications in image processing. We will introduce the basic structure of the quantum network, the process of image compression and reconstruction, and the specific parameter training method. Through this study, we can achieve a classical image reconstruction accuracy of 97.57\%. Our quantum network design will introduce novel ideas and methods for image reconstruction in the future.
description: 8 pages,5 figures
Achieving the volume-law entropy regime with random-sign Dicke states
Creators: name: Sotnikov, Oleg M.
name: Iakovlev, Ilia A.
name: Kiktenko, Evgeniy O.
name: Fedorov, Aleksey K.
name: Mazurenko, Vladimir V.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Physics (quant-ph)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Manipulating entanglement, which reflects non-local correlations in a quantum system and defines the complexity of describing its wave function, represents the extremely tough challenge in the fields of quantum computing, quantum information, and condensed matter physics. In this work, by the example of the well-structured Dicke states we demonstrate that the complexity of these real-valued wave functions can be accurately tuned by introducing a random-sign structure, which allows us to explore the regime of the volume-law entanglement. Importantly, setting nontrivial sign structure one can increase the entanglement entropy of the Dicke state to the values that are close to Page's estimates for Haar-random states. The practical realization of these random-sign Dicke states is possible on different physical platforms with shallow quantum circuits. On the level of the measurements the change in the quantum state complexity due to sign structure can be traced out with the dissimilarity measure that estimates multi-scale variety of patterns in bit-string arrays.
description: The second version of the manuscript with new interesting results
Additional file 1: of Roux-en-Y gastric bypass surgery of morbidly obese patients induces swift and persistent changes of the individual gut microbiota
Creators: name: Palleja, Albert
name: Alireza Kashani
name: Allin, Kristine
name: Nielsen, Trine
name: Chenchen Zhang
name: Li, Yin
name: Brach, Thorsten
name: Suisha Liang
name: Feng, Qiang
name: JĂ¸Rgensen, Nils
name: Bojsen-MĂ¸Ller, Kirstine
name: Dirksen, Carsten
name: Burgdorf, Kristoffer
name: Holst, Jens
name: Madsbad, Sten
name: Wang, Jun
name: Pedersen, Oluf
name: Hansen, Torben
name: Manimozhiyan Arumugam
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Ten supporting figures. A figure caption for each is given within the file. (PDF 716 kb)
Assessing frustration in real-world signed networks: a statistical theory of balance
Creators: name: Gallo, Anna
name: Garlaschelli, Diego
name: Squartini, Tiziano
Publisher: name: arXiv
Year: 2024
Subjects: subject: Physics and Society (physics.soc-ph)
subject: Applied Physics (physics.app-ph)
subject: Data Analysis, Statistics and Probability (physics.data-an)
subject: FOS: Physical sciences

description: According to the so-called strong version of structural balance theory, actors in signed social networks avoid establishing triads with an odd number of negative links. Generalising, the weak version of balance theory allows for nodes to be partitioned into any number of blocks with positive internal links, mutually connected by negative links. If this prescription is interpreted rigidly, i.e. without allowing for statistical noise in the observed link signs, then most real graphs will appear to require a larger number of blocks than the actual one, or even to violate both versions of the theory. This might lead to conclusions invoking even more relaxed notions of balance. Here, after rephrasing structural balance theory in statistically testable terms, we propose an inference scheme to unambiguously assess whether a real-world, signed graph is balanced. We find that the proposed statistical balance theory leads to interpretations that are quite different from those derived from the current, deterministic versions of the theory.
description: 25 pages, 16 figures, 1 table
Scapteriscus didactylus Latreille 1804
Creators: name: Yong, Sheyla
name: Perez-Gelabert, Daniel E.
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Orthoptera
Lathiceridae
Scapteriscus
Scapteriscus didactylus

description: Scapteriscus didactylus (Latreille, 1804)
Rehn, 1909: 217; Cardin, 1913: 330; Nickle and Castner, 1984: 461; Frank and McCoy, 2014: 3.
Distribution. Cuba?, Southern Florida, Hispaniola, Puerto Rico, Trinidad and Tobago, Grenada, St. Vincent, Barbados, St. Lucia, Martinique, Dominica, Guadeloupe and U. S. Virgin Islands.
Notes. Frank and McCoy (2014) state that this species is not found in Cuba. However, S. didactylus is thought to have a wide distribution in the West Indies (Rehn, 1909). This question should be resolved through further study of the specimens available in Cuban collections.
description: Published as part of Yong, Sheyla & Perez-Gelabert, Daniel E., 2014, Grasshoppers, Crickets and Katydids (Insecta: Orthoptera) of Cuba: an annotated checklist, pp. 401-438 in Zootaxa 3827 (4) on page 431, DOI: 10.11646/zootaxa.3827.4.1, http://zenodo.org/record/228581
Additional file 1 of Statistical significance approximation in local trend analysis of high-throughput time-series data using the theory of Markov chains
Creators: name: Xia, Li
name: Dongmei Ai
name: Cram, Jacob
name: Xiaoyi Liang
name: Fuhrman, Jed
name: Fengzhu Sun
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Simulation results for t =0.5. (1004 Kb)
Additional file 1: of Antibiotic use in rural China: a cross-sectional survey of knowledge, attitudes and self-reported practices among caregivers in Shandong province
Creators: name: Lilu Ding
name: Sun, Qiang
name: Weishuai Sun
name: Yihui Du
name: Li, Yue
name: Xuefeng Bian
name: Guiqin He
name: Huidong Bai
name: Dyar, Oliver
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Research questionnaire of knowledge, attitudes and practices of antibiotics among Caregivers in the rural area of Shandong Province. (DOCX 31Â kb)
Schistocerca obscura Fabricius 1798
Creators: name: Yong, Sheyla
name: Perez-Gelabert, Daniel E.
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Orthoptera
Baissogryllidae
Schistocerca
Schistocerca obscura

description: Schistocerca obscura (Fabricius, 1798)
Amédégnato et al., 1995: 699.
Holotype lost neotype male; designated by Dirsh (1974) from Allen County, Kansas, U. S. A. [NHM].
Distribution. U. S. A., especially southern and eastern states including Florida and Mexico.
Notes. There are three specimens in the Gundlach collection (at CZACC) determined with this name, but this may be a case of misidentification and that these are really Schistocerca serialis cubense (Saussure), as suggested by Amédégnato et al. (1995).
description: Published as part of Yong, Sheyla & Perez-Gelabert, Daniel E., 2014, Grasshoppers, Crickets and Katydids (Insecta: Orthoptera) of Cuba: an annotated checklist, pp. 401-438 in Zootaxa 3827 (4) on page 431, DOI: 10.11646/zootaxa.3827.4.1, http://zenodo.org/record/228581
Arcyptera (Arcyptera) fuscum Pallas 1773
Creators: name: Yong, Sheyla
name: Perez-Gelabert, Daniel E.
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Orthoptera
Acrididae
Arcyptera
Arcyptera fuscum

description: Arcyptera (Arcyptera) fuscum (Pallas, 1773)
[= Stetophyma fuscum (Pallas, 1773)] Amédégnato et al., 1995: 705.
Distribution. Europe.
Notes. There is one female specimen deposited in the Gundlach collection at CZACC belonging to this European species. This species does not appear to be part of the Cuban fauna and is likely a case of a European specimen that made it into Gundlach’s collection. Only Bolívar (1888) and Gundlach (1891) mention this species, which has never been taken again in Cuba or the genus found in the New World.
description: Published as part of Yong, Sheyla & Perez-Gelabert, Daniel E., 2014, Grasshoppers, Crickets and Katydids (Insecta: Orthoptera) of Cuba: an annotated checklist, pp. 401-438 in Zootaxa 3827 (4) on page 431, DOI: 10.11646/zootaxa.3827.4.1, http://zenodo.org/record/228581
Reducing Dominating Sets in Graphs
Creators: name: Inza, Ernesto Parra
name: Almira, José María Sigarreta
name: Vakhania, Nodari
Publisher: name: arXiv
Year: 2024
Subjects: subject: Discrete Mathematics (cs.DM)
subject: FOS: Computer and information sciences
subject: 68R10, 05C69, 90C59

description: A dominating set of a graph $G=(V,E)$ is a subset of vertices $S\subseteq V$ such that every vertex $v\in V\setminus S$ has at least one neighbor in set $S$. The corresponding optimization problem is known to be NP-hard. The best known polynomial time approximation algorithm for the problem separates the solution process in two stages applying first a fast greedy algorithm to obtain an initial dominating set, and then it uses an iterative procedure to reduce (purify) this dominating set. The purification stage turned out to be practically efficient. Here we further strengthen the purification stage presenting four new purification algorithms. All four purification procedures outperform the earlier purification procedure. The algorithms were tested for over 1300 benchmark problem instances. Compared to the known upper bounds, the obtained solutions were about 7 times better. Remarkably, for the 500 benchmark instances for which the optimum is known, the optimal solutions were obtained for 46.33\% of the tested instances, whereas the average error for the remaining instances was about 1.01.
Additional file 1: Figure S1. of Comprehensive analysis of promoter-proximal RNA polymerase II pausing across mammalian cell types
Creators: name: Day, Daniel
name: Zhang, Bing
name: Stevens, Sean
name: Ferrari, Francesco
name: Larschan, Erica
name: Park, Peter
name: Pu, William
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Computational Biology

description: Measurement of pausing index (PI). Figure S2. Robustness of RNAP2 pausing calculations. Figure S3. Pausing across cell and tissue types. Figure S4. Correlation between pausing and promoter GC and CpG content Figure S5. Relationship between whole gene, TSSR, and gene body RNAP2 density and PI to gene expression for GM12878, H1, K562, IMR90, HUVEC, and HepG2 cells. Figure S6. Grouping paused and non-paused genes by mean population-wide expression shows no consistent expression level difference within quantile. Figure S7. Effect of extracellular stimuli on RNAP2 pausing. Figure S8. Relationship of gene expression to TSSR and gene body RNAP2 density and to PI. Figure S9. The inflection point does not appear to be driven by a limit to the level of initiating RNAP2. Figure S10. Nucleosome positioning and RNAP2 pausing. Figure S11. Chromatin features and RNAP2 pausing. (PDF 7287 kb)
A general framework for active space embedding methods: applications in quantum computing
Creators: name: Battaglia, Stefano
name: Rossmannek, Max
name: Rybkin, Vladimir V.
name: Tavernelli, Ivano
name: Hutter, Jürg
Publisher: name: arXiv
Year: 2024
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: Materials Science (cond-mat.mtrl-sci)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We developed a general framework for hybrid quantum-classical computing of molecular and periodic embedding approaches based on an orbital space separation of the fragment and environment degrees of freedom. We demonstrate its potential by presenting a specific implementation of periodic range-separated DFT coupled to a quantum circuit ansatz, whereby the variational quantum eigensolver and the quantum equation-of-motion algorithm are used to obtain the low-lying spectrum of the embedded fragment Hamiltonian. Application of this scheme to study localized electronic states in materials is showcased through the accurate prediction of the optical properties of the neutral oxygen vacancy in magnesium oxide (MgO). Despite some discrepancies in the position of the main absorption band, the method demonstrates competitive performance compared to state-of-the-art ab initio approaches, particularly evidenced by the excellent agreement with the experimental photoluminescence emission peak.
Dual-Port Grid-Forming Interconnecting Power Converters in Hybrid AC/DC Grids
Creators: name: Arévalo-Soler, Josep
name: Nahalparvari, Mehrdad
name: Gross, Dominic
name: Prieto-Araujo, Eduardo
name: Norrga, Staffan
name: Gomis-Bellmunt, Oriol
Publisher: name: arXiv
Year: 2024
Subjects: subject: Systems and Control (eess.SY)
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: Interconnecting power converters (IPC) are the main elements enabling the interconnection of multiple high-voltage alternating current (HVAC) and high-voltage direct current (HVDC) subgrids. These converters can be classified either as grid-forming or grid-following. These roles can be assigned to both ac and dc terminals. This work compares state-of-the-art single-port grid-forming and grid-following control schemes with a dual-port grid-forming control scheme, which can simultaneously form a stable voltage on the ac and the dc sides. The dual-port grid-forming small-signal stability and dynamic behavior under fluctuations in the power flow are studied and compared against state-of-the-art control architectures. Moreover, the dual-port control scheme is validated and tested on a down-scaled laboratory platform with several transient events.
description: 10 pages, 17 figures, submitted to IEEE Journal of Emerging and Selected Topics in Power Electronics
Mitigating errors in logical qubits
Creators: name: Smith, Samuel C.
name: Brown, Benjamin J.
name: Bartlett, Stephen D.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Physics (quant-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Quantum error correcting codes protect quantum information, allowing for large quantum computations provided that physical error rates are sufficiently low. We combine post-selection with surface code error correction through the use of a parameterized family of exclusive decoders, which are able to abort on decoding instances that are deemed too difficult. We develop new numerical sampling methods to quantify logical failure rates with exclusive decoders as well as the trade-off in terms of the amount of post-selection required. For the most discriminating of exclusive decoders, we demonstrate a threshold of 50\% under depolarizing noise for the surface code (or $32(1)\%$ for the fault-tolerant case with phenomenological measurement errors), and up to a quadratic improvement in logical failure rates below threshold. Furthermore, surprisingly, with a modest exclusion criterion, we identify a regime at low error rates where the exclusion rate decays with code distance, providing a pathway for scalable and time-efficient quantum computing with post-selection. We apply our exclusive decoder to the 15-to-1 magic state distillation protocol, and report a $75\%$ reduction in the number of physical qubits required, and a $60\%$ reduction in the total spacetime volume required, including accounting for repetitions required for post-selection. We also consider other applications, as an error mitigation technique, and in concatenated schemes. Our work highlights the importance of post-selection as a powerful tool in quantum error correction.
description: 20 pages, 17 figures, comments welcome
Additional file 1: of A case of human infection with a novel Babesia species in China
Creators: name: Man, Su-Qin
name: Qiao, Ke
name: Cui, Jie
name: Feng, Meng
name: Fu, Yong-Feng
name: Xun-Jia Cheng
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Multilingual abstracts in the six official working languages of the United Nations. (PDF 300 kb)
Caulopsis gracilis Redtenbacher 1891
Creators: name: Yong, Sheyla
name: Perez-Gelabert, Daniel E.
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Orthoptera
Tettigoniidae
Caulopsis
Caulopsis gracilis

description: Caulopsis gracilis Redtenbacher, 1891
Rehn, 1909: 211.
Distribution. Argentina and Brazil.
Notes. This species name is cited by Rehn (1909) but no other author has ever mentioned this South American species for Cuba. Its original description gives “ Cuba, Brazil, Buenos Aires and Montevideo” as its distribution and also states that “No other data are at hand.”
description: Published as part of Yong, Sheyla & Perez-Gelabert, Daniel E., 2014, Grasshoppers, Crickets and Katydids (Insecta: Orthoptera) of Cuba: an annotated checklist, pp. 401-438 in Zootaxa 3827 (4) on page 432, DOI: 10.11646/zootaxa.3827.4.1, http://zenodo.org/record/228581
Additional file 2: of Cochrane systematic reviews and co-publication: dissemination of evidence on interventions for ophthalmic conditions
Creators: name: Wang, Xue
name: Hawkins, Barbara
name: Dickersin, Kay
Publisher: name: Figshare
Year: 2015
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Science Policy

description: Data extraction form.
Mesolimbic Dopamine Coding of Social Salience and Valence
Creators: name: Cross, Erica
Publisher: name: Georgia State University
Year: 2024

description:
Social interactions can be either rewarding or aversive. In many neuropsychiatric disorders, social pathologies underlie disease etiology. For example, decreased social reward is associated with autism spectrum disorder and social stress is a leading risk factor for mood and anxiety disorders. Social interactions are characterized by their intensity (i.e., salience) and whether they are rewarding or aversive (i.e., valence). The mechanisms underlying the salience and valence of social interactions are not well understood. Social stress is one of the most salient stressors across taxa, but it is unclear how an individuals social status might impact the rewarding or aversive properties of these interactions. If low social rank reduces social reward, it could contribute to the social anhedonia that is characteristic of many social stress-related neuropsychiatric disorders, and if social dominance increases social reward, it could reduce the symptomology of these disorders. The possibility that social stress reduces social reward is supported by evidence that stress can produce long lasting changes in the neural pathways that process reward and reinforcement of behavior, i.e., the mesolimbic dopamine system (MDS), which includes the ventral tegmental area (VTA) and its dopamine (DA) projections to the nucleus accumbens (NAc). Here, we provide evidence to support that DA neurons in the medial VTA (mVTA) that project to the NAc core primarily signal the salience of both rewarding and aversive social interactions. In contrast, DA neurons in the lateral VTA (lVTA) that project to the NAc shell primarily signal valence, with positive valence increasing activation of this subcircuitry. In this dissertation, I tested the hypothesis that dopamine dynamics (DA neuron activity and release patterns) and receptor subtypes within anatomically specific subcircuits of the MDS code, at least in part, the salience and valence of social interactions. Investigating a novel subcircuitry within the MDS that codes for social reward and aversion in males and females seeks to fill the gap in our understanding of social deficits in neuropsychiatric disorders as well as differences in disease prevalence among men and women.
title: Laitue :
title: Principes directeurs pour la conduite de l’examen de la distinction, de l’homogénéité et de la stabilité.
titleType: Subtitle
Creators: name: (:Unas)
Publisher: name: Unknown
Year: 2021

description: Ces principes directeurs (“principes directeurs d’examen”) visent à approfondir les principes énoncés dans l’introduction générale (document TG/1/3) et dans les documents TGP qui s’y rapportent afin de donner des indications concrètes détaillées pour l’harmonisation de l’examen de la distinction, de l’homogénéité et de la stabilité (DHS) et, en particulier, à identifier des caractères convenant à l’examen DHS et à la production de descriptions variétales harmonisées.
Time of Day Variation in Mechanisms Underlying Social Stress
Creators: name: Shaughnessy, Emma
Publisher: name: Georgia State University
Year: 2024

description:
Social stress is a salient risk factor for the etiology and persistence of multiple neuropsychiatric diseases including schizophrenia, anxiety, and mood disorders and is often studied in rodents using social defeat models. A goal of understanding the neural substrates and molecular mechanisms underlying neurophysiological responses to social stress is to discover potential targets for novel, more effective treatments for these debilitating diseases. The overarching goal of this project was to evaluate two potential mechanisms underlying social stress-induced behavioral changes: brain derived neurotrophic factor (BDNF) and perineuronal nets (PNNs). In Aim 1, we tested the hypothesis that BDNF, a neurotrophic factor implicated in the function of anti-depressants, affects responses to social stress differentially in the light and the dark. Indeed, we found that manipulation of BDNF signaling has opposing effects on the response to social stress in the light versus the dark phase of the daily cycle. In Aim 1a, we examined cellular activation in key brain regions that are responsive to social defeat stress and BDNF-signaling but none were differentially affected by lighting. In Aim 1b, we tested the hypothesis that downstream effectors of BDNF-signaling are differentially expressed in the light and the dark. We found that the BDNF receptor tropomyosin kinase receptor B (TrkB) transcripts increase in the light in ACC and that gad1, a genetic marker for GABAergic cells, is lower in the light than in the dark in the BLA. In Aim 2, we investigated whether perineuronal nets (PNNs), an extracellular proteoglycan matrix protein involved in synaptic plasticity, were changing across the light:dark cycle or after social defeat stress. In hamsters, PNNs did not vary across the light:dark cycle, but they did change in a sex-specific manner after social defeat stress specifically in hippocampal area CA1. There were also sex differences in WFA expression in BLA and SSC. Collectively, these data revealed that both BDNF and PNNs are candidates in the modulations of behavioral responses to social defeat stress, and, in particular, the current data emphasize the importance of time-of-day as a critical variable when assessing potential therapeutic potential of novel interventions for stress-related neuropsychiatric disorders.
Political satire in news shows: A study of “The Daily Show” and “Joe Show”
Creators: name: Najla Lilya, Jaballah,
Publisher: name: University of Limerick
Year: 2025
Subjects: classificationCode: 47
subject: Language, communication and culture

description: Media News are constantly adapting to the evolving landscape of the world’s affairs, developing to several forms of news presentation, and attracting the attention of the globe. Notably, satirical news shows have gained fame for their potential to engage viewers through humour, representing local and global amusing TV programs governed by their socio-political contexts. Evidently, satirical news shows as “The Daily Show” hosted by Trevor Noah in the USA and the Egyptian “Joe Show” hosted by Youssef Hussein, serve as prime examples of this genre. They effectively elevate political satire to a new level, appealing to audiences from different backgrounds and cultures through their discourses. Hence, the current project undertakes a comparative analysis of the aforementioned political satire shows, exploring the establishment of satire and discursive boundaries within these distinct shows. To accomplish its aim, the study includes Fairclough's (1989) 3D model of Critical Discourse Analysis, in combination with Conversation Analysis and Bakhtin’s Carnivalesque theory. Four episodes, two from each show, are selected. Despite sharing similarities in format, genre, roles, themes and sharing certain elements of interdiscursivity, both programs use different types and approaches to satire, reflecting varying levels of humour and critique. Whereas Trevor Noah implements Juvenalian satire, containing sharp wit, especially when criticising and parodying the Former President Donald Trump with occasional use of informal and emotive language, Youssef Hussein assume a Horatian satire, considering cultural and global sensitives when comparing and mocking both American and Egyptian political systems. Both shows utilize a range of linguistic, paralinguistic, multimodal, and satirical techniques in addition to carnivalesque elements like grotesque realism, ambivalence, and dialogic engagement to subvert political authority, and balance humour with social critique, offering a space for reflection on power dynamics within contemporary media. They attack political leaders, scrutinize democracy, and mock pro-regime media, playing multifaceted roles as educators, entertainers, and evaluators. The sociocultural context of these shows is evident in the choice of satirical devices, the selected themes around their contexts and their cultural expressions.
Representation Learning of Daily Movement Data Using Text Encoders
Creators: name: Capstick, Alexander
name: Cui, Tianyu
name: Chen, Yu
name: Barnaghi, Payam
Publisher: name: arXiv
Year: 2024
Subjects: subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: Time-series representation learning is a key area of research for remote healthcare monitoring applications. In this work, we focus on a dataset of recordings of in-home activity from people living with Dementia. We design a representation learning method based on converting activity to text strings that can be encoded using a language model fine-tuned to transform data from the same participants within a $30$-day window to similar embeddings in the vector space. This allows for clustering and vector searching over participants and days, and the identification of activity deviations to aid with personalised delivery of care.
description: Accepted at ICLR 2024 Workshop on Learning from Time Series For Health: https://openreview.net/forum?id=mmxNNwxvWG
Paratrypaea
Creators: name: Dworschak, Peter C.
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Callianassidae
Paratrypaea

description: Paratrypaea sp.
Callianassa bouvieri — Sakai, 1999: 40 (part, material from Hawaii); 2005: 78 (part) [not Callianassa bouvieri Nobili, 1904]. Paratrypaea? sp. HWI — Felder & Robles, 2009: 330 (list), 335 (tree).
Material. ZMH K27847, 1 fragment of carapace with major and minor P1, Mxp3 and all other legs and abdomen missing, 1 damaged female carapace, (cl 5.3) detached major and minor P1, abdomen of ovigerous female, Oahu, Hawaii Archipel, H. Caspers leg. 17 April 1959, no.12 KSII (a4), det L.B. Holthuis (as C. maldivensis), rev. K. Sakai (as C. bouvieri). – ZMH K27848, 1 male (cl 4.9, major P1 missing, minor P 1 in regeneration, Mxp3 missing), 1 female (cl 4.9, both P1 missing, abdominal somite 6 and tailfan separated), Sand Island, Kaneohe Bay, Oahu, H. Caspers leg. 10 April 1959, no. 21, det L.B. Holthuis (as C. maldivensis), rev. K. Sakai (as C. bouvieri). – ULLZ 6575 1 female (cl 4.7, major P1 missing); ULLZ 6576 1 male (cl 5.7), 3 ovigerous female (not measured, all P1 missing), 1 female (cl 5.2), two detached major P1; ULLZ 7080 1 male (cl 5.5, DNA voucher EU882919 and EU875029), Paiko Peninsula Lagoon, Oahu, Hawaii, D.L. Felder & R. Robles coll. 6 May 2003, yabby pumping; – ULLZ 6578 1 male (cl 5.6); ULLZ 6577, 7 males, 19 females (10 ovigerous) (cl 4.2–6.2, only few with P 1 attached), 6 right major, 5 left major, 5 left minor, 3 right minor detached P1; NHMW 24323 1 male (cl 6.1), 1 female (cl 4.3), Kanohe Bay, Kealohi Point, State Park, NE shore of Oahu, Hawaii, D.L. Felder & R. Robles coll. 6 May 2003, shoreline and intertidal.
Size. Males from cl 4.2 to 6.2, females (ovigerous) from cl 4.1 to 6.3.
Remarks. In a phylogenetic MP analysis of 16S and 12S rDNA data, the material of Paratrypaea from Hawaii groups together with P. bouvieri (see Felder & Robles, 2009). Data of P. m a l d i v e n s i s were not yet included in this study, but unpublished data show that P. maldivensis and Paratrypaea sp. from Hawaii can be separated using both 16S and 12S (R. Robles pers. comm. 5 May 2009).
This species is morphologically very similar to P. maldivensis, especially with respect to the chelipeds, but has the rostrum shorter and relatively longer and more slender eyestalks than P. bouvieri and P. maldivensis. The telson is more squarish than in the other two species, slightly indented at the posterior edge, and has a prominent median spine as in P. maldivensis.
description: Published as part of Dworschak, Peter C., 2012, On the identities of Callianassa bouvieri Nobili, 1904, C. maldivensis Borradaile, 1904, and C. gravieri Nobili, 1905 (Crustacea: Decapoda: Callianassidae): a morphometric approach, pp. 39-56 in Zootaxa 3149 on pages 52-53, DOI: 10.11646/zootaxa.3149.1.2, http://zenodo.org/record/210180
Additional file 1: of Cochrane systematic reviews and co-publication: dissemination of evidence on interventions for ophthalmic conditions
Creators: name: Wang, Xue
name: Hawkins, Barbara
name: Dickersin, Kay
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Developmental Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Requirements for co-publication given in the Cochrane Policy, as of June 10, 2014.
Ceuthophilus lapidicola Burmeister 1838
Creators: name: Yong, Sheyla
name: Perez-Gelabert, Daniel E.
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Orthoptera
Rhaphidophoridae
Ceuthophilus
Ceuthophilus lapidicola

description: Ceuthophilus lapidicola (Burmeister, 1838)
Rehn, 1909: 208.
Distribution. Pennsylvania to Georgia, and west to Iowa.
Notes. Rehn (1909) reports this species based on the Works of Haan but also mentions that none of the authors of the time had found it. There are no specimens in the Cuban collections that could represent this species.
description: Published as part of Yong, Sheyla & Perez-Gelabert, Daniel E., 2014, Grasshoppers, Crickets and Katydids (Insecta: Orthoptera) of Cuba: an annotated checklist, pp. 401-438 in Zootaxa 3827 (4) on page 432, DOI: 10.11646/zootaxa.3827.4.1, http://zenodo.org/record/228581
Additional file 4: of Cochrane systematic reviews and co-publication: dissemination of evidence on interventions for ophthalmic conditions
Creators: name: Wang, Xue
name: Hawkins, Barbara
name: Dickersin, Kay
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Statements of secondary publication in 13 CEVG co-publications.
Cross-Domain Feature Augmentation for Domain Generalization
Creators: name: Liu, Yingnan
name: Zou, Yingtian
name: Qiao, Rui
name: Liu, Fusheng
name: Lee, Mong Li
name: Hsu, Wynne
Publisher: name: arXiv
Year: 2024
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: Domain generalization aims to develop models that are robust to distribution shifts. Existing methods focus on learning invariance across domains to enhance model robustness, and data augmentation has been widely used to learn invariant predictors, with most methods performing augmentation in the input space. However, augmentation in the input space has limited diversity whereas in the feature space is more versatile and has shown promising results. Nonetheless, feature semantics is seldom considered and existing feature augmentation methods suffer from a limited variety of augmented features. We decompose features into class-generic, class-specific, domain-generic, and domain-specific components. We propose a cross-domain feature augmentation method named XDomainMix that enables us to increase sample diversity while emphasizing the learning of invariant representations to achieve domain generalization. Experiments on widely used benchmark datasets demonstrate that our proposed method is able to achieve state-of-the-art performance. Quantitative analysis indicates that our feature augmentation approach facilitates the learning of effective models that are invariant across different domains.
description: Accepted to the 33rd International Joint Conference on Artificial Intelligence (IJCAI 2024); Code is available at https://github.com/NancyQuris/XDomainMix
Additional file 3: of Cochrane systematic reviews and co-publication: dissemination of evidence on interventions for ophthalmic conditions
Creators: name: Wang, Xue
name: Hawkins, Barbara
name: Dickersin, Kay
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Reasons six co-publications had a different number of included studies compared to the CEVG review.
On the effect of derivative interactions in quantum field theory
Creators: name: Rehren, K. -H.
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences
subject: 81T10, 81T13, 81T70

description: There exist several good reasons why one may wish to add a total derivative to an interaction in quantum field theory, e.g., in order to improve the perturbative construction. Unlike in classical field theory, adding derivatives in general changes the theory. The analysis whether and how this can be prevented, is presently limited to perturbative orders $g^n$ , $n \leq 3$. We drastically simplify it by an all-orders formula, which also allows to answer some salient structural questions. The method is part of a larger program to (re)derive interactions of particles by quantum consistency conditions, rather than a classical principle of gauge invariance.
description: 17 pages. v2: 23 pages, strongly revised for self-containedness, as published in LMP
Additional file 1: of Draft genomic sequence of a chromate- and sulfate-reducing Alishewanella strain with the ability to bioremediate Cr and Cd contamination
Creators: name: Xia, Xian
name: Jiahong Li
name: Shuijiao Liao
name: Gaoting Zhou
name: Wang, Hui
name: Liqiong Li
name: Xu, Biao
name: Gejiao Wang
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Figure S1. Phylogenetic relationships of Alishewanella sp. WH16-1 based on gyrB sequences. The analysis was performed by MEGA 6.0 [45] with NJ algorithm and 1,000 bootstrap repetitions were computed to estimate the reliability of the tree. The gyrB gene of strain WH16-1 is the gene sequence coding for AAY72_13600. Figure S2. The putative sulfate transport and reduction pathway in Alishewanella sp. WH16-1. APS stands for adenylylsulphate, PAPS stands for phosphoadenylylsulphate. The locus tag numbers of the predicted proteins (CysP, CysU, CysW, CysA, CysN, CysD, CysC, CysH CysJ and CysI) are AAY72_14890, AAY72_14885, AAY72_14880, AAY72_14875, AAY72_03865, AAY72_03870, AAY72_07290, AAY72_07265, AAY72_07255 and AAY72_07260, respectively. (DOCX 355Â kb)
Additional file 1: Table S1. of Identification and characterization of a novel stress-responsive outer membrane protein Lip40 from Actinobacillus pleuropneumoniae
Creators: name: Xuehe Hu
name: Yan, Hao
name: Liu, Ke
name: Jiansheng Hu
name: Qi, Chao
name: Jihong Yang
name: Yanli Liu
name: Zhao, Jin
name: Jinlin Liu
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Plant Biology

description: Prediction of the potential lipoproteins (LPPs) of A. pleuropneumoniae (DOC 179 kb)