cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Mecistocephalus tahitiensis subsp. porosus Haase 1887
Creators: name: Thofern, Detlef
name: Dupérré, Nadine
name: Harms, Danilo
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Chilopoda
Geophilomorpha
Mecistocephalidae
Mecistocephalus
Mecistocephalus tahitiensis
Mecistocephalus tahitiensis porosus haase, 1887

description: 146. Mecistocephalus tahitiensis porosus Haase, 1887
Haase 1887: 102 (as Var. Mec. porosus n. v.)
Type locality and specimens. Ein Stück aus Viti Levu [One specimen from Viti Levu].
Dimensions. 41 mm lang, vorn 1.8, in der Mitte 2, und hinten 0.8 mm breit [41 mm long, front 1.8, middle 2, and rear end 0.8 mm].
Type material. Holotype. FIJI: Viti Levu Group (archipelago), Viti Levu [ca. 17°48’S, 178°0’E].
Old type catalogue. Weidner (1960), p. 63, No. 24, Holotype.
Additional remarks. This specimen was part of the Godeffroy collection (Godeffroy Nr. 6493) and already missing in 1938 (Weidner 1960). Haase (1887) mentiones that he had several specimens from Gayndah and Rockhampton from the Museum Hamburg and additional specimens from the Museums Dresden and Vienna from Gayndah (presumably sent or sold by the Museum Godeffroy). However, only one specimen had white spots with small setae which he described as typical for his variety “ porosus ”. Also note that the type locality of M. tahitiensis is from eastern Tahiti and not Viti Levu.
Current systematic position. Mecistocephalus tahitiensis Wood, 1862; see Chamberlin (1953: 80).
description: Published as part of Thofern, Detlef, Dupérré, Nadine & Harms, Danilo, 2021, An annotated type catalogue of the centipedes (Myriapoda: Chilopoda) held in the Zoological Museum Hamburg, pp. 1-103 in Zootaxa 4977 (1) on page 84, DOI: 10.11646/zootaxa.4977.1.1, http://zenodo.org/record/4819677
Additional file 1: Figure S1. of Gamma tocotrienol targets tyrosine phosphatase SHP2 in mammospheres resulting in cell death through RAS/ERK pathway
Creators: name: Wenyi Gu
name: Prasadam, Indira
name: Meihua Yu
name: Fengxia Zhang
name: Ling, Patrick
name: Xiao, Yin
name: Chengzhong Yu
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Characterization of sphere cell forming cells cultured from colon cancer cell line HCT-116. Figure S2. Self-renewal gene expressions of Îł-T3 treated HeLa spherical cells. (DOCX 167 kb)
Additional file 3: Figure S3. of pVAC-Seq: A genome-guided in silico approach to identifying tumor neoantigens
Creators: name: Jasreet Hundal
name: Carreno, Beatriz
name: Petti, Allegra
name: Linette, Gerald
name: Obi Griffith
name: Mardis, Elaine
name: Griffith, Malachi
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Illustrates the landscape of neoantigen vaccine candidates in patient MEL218 after being prioritized using the pVAC-Seq pipeline. The points represent the overall sequencing information: exome and RNA VAFs, gene expression in terms of log2 FPKM value, as well log2 fold change, calculated as the ratio of WT binding affinity over mutant binding affinity. Recommended exome and RNA VAF cutoffs are also indicated. Candidates that were incorporated in the vaccine are labeled based on the genes containing these somatic mutations. Red boxes depict naturally occurring (that is, pre-existing T cell response) and blue boxes denote vaccine-induced neoantigens that were recognized by T cells. Since BRAF was used as a guide for assessing clonality of other mutations, it is also shown. (PDF 111 kb)
Schendyla javanica Attems 1907
Creators: name: Thofern, Detlef
name: Dupérré, Nadine
name: Harms, Danilo
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Chilopoda
Geophilomorpha
Schendylidae
Schendyla
Schendyla javanica

description: 147. Schendyla javanica Attems, 190­7
Attems 1907: 94–95, figs. VI, VII (as Schendyla javanica n. sp.)
Type locality and specimens. Fundort [locality]: Tjompea [Ciampea].
Dimensions. Länge mit Antennen 10 mm, Breite 0,5 mm. [Length including antenna 10 mm, width 0.5 mm]. 31 Beinpaare [leg pairs].
Type material. Syntype (ZMH-A0000541). INDONESIA: West Java, Ciampea [ca. 6°33’S, 106°41’E].
Preservation. 1 jar: Label 1. Schendyla javanica Att. Typus, Krpln L. 11.III.04, Tjompeahöhle Java gesiebt (Kraepelin handwriting); Label 2. Schendyla javanica Att. Typus, Krpln L. 11.III.04, Tjompea aus Guano gesiebt [sifted from guano] (Kraepelin handwriting); Label 3. Schend. javanica Att Typus Tjompea Java; Label 4. Verloren bei Dr. Crabill (Washingt.)? Siehe Brief von Dr. Rack, 4.01.1990. Mesoschendyla javanica (Attems) (Schendyla j.)
Old type catalogue. Weidner (1960), p. 63, No. 34. Holotype.
Additional type material. There are 2 microscope slides with syntype parts from Tjompea (coll. K. Kraepelin 1903, don. K. Kraepelin) at the NHMW (no. 4883).
Collection remarks. The specimen was collected from cave guano by Karl Kraepelin during his expedition to India and Java 1903–1904.
Curatorial remarks. Ilie et al. (2009: 37–38) noted: “ Weidner (1960: 63) specified the holotype (!) from the ZMH ” but this specimen is rather a syntype. It was lost by Crabill (Rack, unpubl.) and the material at the NHMW remains as the primary reference for this species.
Current systematic position. Mesoschendyla javanica (Attems, 1907); transferred by Crabill (1968c).
description: Published as part of Thofern, Detlef, Dupérré, Nadine & Harms, Danilo, 2021, An annotated type catalogue of the centipedes (Myriapoda: Chilopoda) held in the Zoological Museum Hamburg, pp. 1-103 in Zootaxa 4977 (1) on page 84, DOI: 10.11646/zootaxa.4977.1.1, http://zenodo.org/record/4819677
Additional file 2: Figure S2. of pVAC-Seq: A genome-guided in silico approach to identifying tumor neoantigens
Creators: name: Jasreet Hundal
name: Carreno, Beatriz
name: Petti, Allegra
name: Linette, Gerald
name: Obi Griffith
name: Mardis, Elaine
name: Griffith, Malachi
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Illustrates the landscape of neoantigen vaccine candidates in patient MEL38 after being prioritized using the pVAC-Seq pipeline. The points represent the overall sequencing information: exome and RNA VAFs, gene expression in terms of log2 FPKM value, as well log2 fold change, calculated as the ratio of WT binding affinity over mutant binding affinity. Recommended exome and RNA VAF cutoffs are also indicated. Candidates that were incorporated in the vaccine are labeled based on the genes containing these somatic mutations. Red boxes depict naturally occurring (that is, pre-existing T cell response) and blue boxes denote vaccine-induced neoantigens that were recognized by T cells. Since BRAF was used as a guide for assessing clonality of other mutations, it is also shown in each of three metachronous tumors (from the same patient). (PDF 182 kb)
Additional file 4: Figure S4. of pVAC-Seq: A genome-guided in silico approach to identifying tumor neoantigens
Creators: name: Jasreet Hundal
name: Carreno, Beatriz
name: Petti, Allegra
name: Linette, Gerald
name: Obi Griffith
name: Mardis, Elaine
name: Griffith, Malachi
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Illustrates the landscape of neoantigen vaccine candidates in patient MEL69 after being prioritized using the pVAC-Seq pipeline. The points represent the overall sequencing information: exome and RNA VAF cutoffs, gene expression in terms of log2 FPKM value, as well log2 fold change, calculated as the ratio of WT binding affinity over mutant binding affinity. Recommended exome and RNA VAFs are also indicated. Candidates that were incorporated in the vaccine are labeled based on the genes containing these somatic mutations. Red boxes depict naturally occurring (that is, pre-existing T cell response) and blue boxes denote vaccine-induced neoantigens that were recognized by T cells. Since BRAF was used as a guide for assessing clonality of other mutations, it is also shown in both the metachronous tumors (from the same patient). (PDF 143 kb)
Additional file 1: Figure S1. of pVAC-Seq: A genome-guided in silico approach to identifying tumor neoantigens
Creators: name: Jasreet Hundal
name: Carreno, Beatriz
name: Petti, Allegra
name: Linette, Gerald
name: Obi Griffith
name: Mardis, Elaine
name: Griffith, Malachi
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer

description: Illustrates the variant calling pipeline employed as part of the GMS strategy. (PDF 150 kb)
MOESM1 of Biofilm as a production platform for heterologous production of rhamnolipids by the non-pathogenic strain Pseudomonas putida KT2440
Creators: name: Vinoth Wigneswaran
name: Nielsen, Kristian
name: Sternberg, Claus
name: Jensen, Peter
name: Folkesson, Anders
name: Jelsbak, Lars
Publisher: name: Figshare
Year: 2016
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Plant Biology
subject: Computational Biology

description: Additional file 1. Supporting information with additional information on SPL and describing the structural identification of the rhamnolipid congeners based on fragmentation patterns.
Additional file 1: Table S1. of Copper oxide nanoparticle toxicity profiling using untargeted metabolomics
Creators: name: Boyles, Matthew
name: Ranninger, Christina
name: Reischl, Roland
name: Rurik, Marc
name: Tessadri, Richard
name: Kohlbacher, Oliver
name: Duschl, Albert
name: Huber, Christian
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer

description: Tuning parameters QExactive Plus. Table S2. Cell numbers [x106] for Control (C) as well as CuO NP Treated (T). Table S3. Cell numbers [x106] of Control (C), STS treated (STS) and Camptothecin treated (CPT) for the different time points. Table S4. Relative standard deviation (RSD) of internal standards for metabolomics profiling – values for Ethylparabene and Nitrotyrosine in CuO NP profiling. Table S5. Feature number after the different steps of data processing. Figure S1. Overlaps at feature level for RP and HILIC separation for (a) positive ESI-mode and (b) negative ESI-mode. Figure S2. Cell viability, cytotoxicity, and IL-8 secretion in response to CuO NPs and Cl2Cu•2H2O. Table S6. Differentially regulated metabolites upon CuO NP treatment. Table S7. Number of differentially expressed features found for each separation method (reversed phase as well as hydrophilic interaction chromatography in positive and negative modes). Figure S3. HO-1 gene expression in response to CuO NPs. Figure S4. GPX1 gene expression in response to CuO NPs. Figure S5. Bar plot of peak areas for Methylnicotinamide at the time points (0 h, 6 h, 12 h and 24 h) of both metabolomics studies CuO NP (control CuO study and CuO treatment) and apoptosis study (control apoptosis study, STS treatment and CPT treatment). (DOCX 193 kb)
Macroptatus deppens Prena 2023, new species
Creators: name: Prena, Jens
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Curculionidae
Macroptatus
Macroptatus deppens

description: Macroptatus deppens Prena, new species
(Figs. 6, 7, 9, 15, 19, 23, 27) http://zoobank.org/ urn:lsid:zoobank.org:act: 3BFC0E8E-786C-482B-8E5B-64D770443F02
Diagnosis. This large species is readily recognized by its khaki vestiture with transversely arranged dark spots (Figs. 6–7). The widely spaced procoxae and the finely punctate pronotum are shared with M. championi and distinguish Macroptatus from Optatus.
Description. Habitus as in Figs. 6–7; integument black, dense vestiture of light khaki, appressed setae interrupted by small dark setae on pronotal disc and in transversely arranged spots on elytron; female rostrum and head combined as long as elytron, male rostrum shorter, rostrum moderately corrugated ventrolaterally in both sexes (Fig. 19), submentum edentate, antenna inserted at mid-length, club elongate spindle-shaped; pronotum wider than long, bell-shaped, with greatest width at base, finely and evenly punctate except along midline; prosternum with notosternal suture distinct in basal half, procoxae separated by about 1/4 their own width, canal slightly wider than intercoxal prosternal process, shallow, laterally without distinct carina (Fig. 9); metaventrite anteriorly not protruding below apex of mesocoxa (Fig. 15); elytra broadly triangular, with sides gradually converging and apices narrowly rounded, interstria 9 with median carina obliterated in distal half, all others without carina; profemur ventrally with large, anteriorly directed blunt tooth, meso- and metafemora each with ventrally direct acute tooth; male protarsus fringed with long dark hairs and with basal 2 tarsites laterally expanded (Fig. 27), all legs with second tarsite moderately buckled dorsomedially (Figs. 23, 27); claws subconnate basally; total length 11.1–15.1 mm, standard length 10.5–14.3 mm.
Distribution. The species is known from two sites in México east of the Isthmus of Tehuantepec and one site in El Salvador.
Life history. One paratype was collected from Annona. Despite inquiries to local producers and phytosanitory authorities, no more specimens could be obtained (J. Luna Cozar, personal information).
Etymology. The specific epithet is a patronymic noun in Frederician genitive honoring Ferdinand Deppe (1795–1861), the first significant explorer of Mexican wildlife.
Material examined. Holotype male, México, labeled “ Chichen Itza / Yucatan Mex / VI-29”, male (MfNB). Paratypes 2: México, San Fernando near Tuxtla Gutiérrez, Chiapas, on Annona sp., female (UAQM); El Salvador, San Salvador, V. Wellborn, 1939, 26, female (SNSD).
description: Published as part of Prena, Jens, 2023, Two new species of Optatus Pascoe and Macroptatus Heller (Coleoptera, Curculionidae, Baridinae), with a reappraisal of generic characters, pp. 377-386 in Zootaxa 5244 (4) on pages 380-381, DOI: 10.11646/zootaxa.5244.4.4, http://zenodo.org/record/7663616
Additional file 2: Table S1. of Impaired osteogenesis in Menkes disease-derived induced pluripotent stem cells
Creators: name: Dongkyu Kim
name: Jieun Choi
name: Kyu-Min Han
name: Lee, Beom
name: Choi, Jin-Ho
name: Han-Wook Yoo
name: Yong-Mahn Han
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Plant Biology
subject: 60506 Virology

description: Primers used in RT-PCR analysis. Table S2 Primers used in ATP7A genotyping of MD-derived cells. Table S3 Primers used in methylation analysis. Table S4 Copper concentration in WT- and MD-MSCs. (DOCX 19 kb)
Dendrolaelaps casualis Huhta & Karg 2010
Creators: name: Qayyoum, Muhammad Asif
name: Ozman-Sullivan, Sebahat K.
name: Khan, Bilal Saeed
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Mesostigmata
Digamasellidae
Dendrolaelaps
Dendrolaelaps casualis

description: Species: Dendrolaelaps casualis Huhta & Karg, 2010
Description of female (Figures 1A–1D): Idiosomal measurement 333 (323–348) length, 187 (185–192) width.
Gnathosoma: Tectum with three projections, each one distally furcated and equal in length to others (Figure 1C). Chelicerae normal, moveable digit with 4 teeth and a large terminal hook (Figure 1D).
Dorsum: Setae j and J series 18 (18–21) except shorter j1, z series and Z2 19 (19–21), Z1 40 (40–43), Z3 42 (42– 48), Z5 and S5 44 (43–46). Anterolateral region of the postdorsum with slightly structural pattern and incisions (Figure 1A).
Venter: Sternal shield weakly sclerotized. Ventrianal shield 123 (121–125) long, 76 (73–75) wide, and distinctly narrow at the middle level (50 at the level of Vi3). It carries the setae Vi1, Vi2, Vi3, Vi5, and Vz2. Setae Vi5 and Vz4 24 (21–25), other V-setae 14 (13–15). Peritremes reduced, reaching distally the level of St2–St3 (Figure 1B).
Legs: All setae of the legs simple, smooth. Gonoporus opening at the proximal lyrifissure of femur III.
Specimens examined: Two females from Doğanca, Bafra, Samsun Province, Turkey (Site-1) (41°39′05″N, 36°01′10.9″E), 18 November 2013; six females from Doğanca, Bafra, Samsun Province (Site-2) (41°39′13.8″N, 36°00′45.7″E), 1 April 2014; three females from Site-2, 16 June 2014; five females from Doğanca, Bafra, Samsun Province (Site-3) (41°39′08.7″N, 35°59′59.2″E), 18 November 2013; 2 females from Site-3, 16 June 2014.
Distribution: Finland (Huhta and Karg, 2010). This species is a new record for the Turkish fauna.
description: Published as part of Qayyoum, Muhammad Asif, Ozman-Sullivan, Sebahat K. & Khan, Bilal Saeed, 2016, Description of new records of the family Digamasellidae (Acari: Mesostigmata) from Kızılırmak Delta, Samsun Province, Turkey *, pp. 324-327 in Turkish Journal of Zoology 40 (3) on pages 325-326, DOI: 10.3906/zoo-1502-28, http://zenodo.org/record/10973766
MOESM2 of Attenuation of Plasmodium falciparum in vitro drug resistance phenotype following culture adaptation compared to fresh clinical isolates in Cambodia
Creators: name: Suwanna Chaorattanakawee
name: Lanteri, Charlotte
name: Siratchana Sundrakes
name: Kritsanai Yingyuen
name: Panita Gosi
name: Nitima Chanarat
name: Saowaluk Wongarunkochakorn
name: Nillawan Buathong
name: Soklyda Chann
name: Worachet Kuntawunginn
name: Montri Arsanok
name: Lin, Jessica
name: Juliano, Jonathan
name: Tyner, Stuart
name: Mengchuor Char
name: Chanthap Lon
name: Saunders, David
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 2. IC50 obtained from 12 Plasmodium falciparum fresh isolates were higher than when culture-adapted from cryopreserved samples for both the HRP-2 and SYBR Green I assays.
MOESM1 of Attenuation of Plasmodium falciparum in vitro drug resistance phenotype following culture adaptation compared to fresh clinical isolates in Cambodia
Creators: name: Suwanna Chaorattanakawee
name: Lanteri, Charlotte
name: Siratchana Sundrakes
name: Kritsanai Yingyuen
name: Panita Gosi
name: Nitima Chanarat
name: Saowaluk Wongarunkochakorn
name: Nillawan Buathong
name: Soklyda Chann
name: Worachet Kuntawunginn
name: Montri Arsanok
name: Lin, Jessica
name: Juliano, Jonathan
name: Tyner, Stuart
name: Mengchuor Char
name: Chanthap Lon
name: Saunders, David
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 1. Amplicon deep sequencing of apical membrane antigen 1.
Cormocephalus mediosulcatus Attems 1928
Creators: name: Thofern, Detlef
name: Dupérré, Nadine
name: Harms, Danilo
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Chilopoda
Scolopendromorpha
Scolopendridae
Cormocephalus
Cormocephalus mediosulcatus

description: 149. Cormocephalus mediosulcatus Attems, 1928
Attems 1928: 285, figs 1–4 (as Cormocephalus mediosulcatus nov. spec.)
Type locality and specimens. Brasilien [Brazil], Staat Grao Para, Insel [Isle] Marajo, Distrikt [District] Caldeirao [Caldeirão].
Dimensions. (ohne Endbeine) [without terminal legs] 40 mm.
Type material. Holotype. BRAZIL: Pará State, Salvaterra [ca. 0°45’N, 48°31’W].
Old type catalogue. Weidner (960), p. 66, No. 26. Holotype.
Remarks. The type is listed as present in Weidner (1960) and Kraepelin’s catalogue but actually lost. There is no record of how and when the specimen was lost but it is listed as lost (“ fehlt ”) on file card. The type locality probably refers to Vila De Caldeirão in Salvaterra, Pará.
Current systematic position. Cormocephalus mediosulcatus Attems, 1928.
description: Published as part of Thofern, Detlef, Dupérré, Nadine & Harms, Danilo, 2021, An annotated type catalogue of the centipedes (Myriapoda: Chilopoda) held in the Zoological Museum Hamburg, pp. 1-103 in Zootaxa 4977 (1) on page 85, DOI: 10.11646/zootaxa.4977.1.1, http://zenodo.org/record/4819677
MOESM3 of Attenuation of Plasmodium falciparum in vitro drug resistance phenotype following culture adaptation compared to fresh clinical isolates in Cambodia
Creators: name: Suwanna Chaorattanakawee
name: Lanteri, Charlotte
name: Siratchana Sundrakes
name: Kritsanai Yingyuen
name: Panita Gosi
name: Nitima Chanarat
name: Saowaluk Wongarunkochakorn
name: Nillawan Buathong
name: Soklyda Chann
name: Worachet Kuntawunginn
name: Montri Arsanok
name: Lin, Jessica
name: Juliano, Jonathan
name: Tyner, Stuart
name: Mengchuor Char
name: Chanthap Lon
name: Saunders, David
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 3. Msp1/msp2/glurp genotypes found in original and culture-adapted samples of 12 Plasmodium falciparum isolates from Cambodia.
Multidendrolaelaps putte Huhta & Karg 2010
Creators: name: Qayyoum, Muhammad Asif
name: Ozman-Sullivan, Sebahat K.
name: Khan, Bilal Saeed
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Mesostigmata
Digamasellidae
Multidendrolaelaps
Multidendrolaelaps putte

description: Species: Multidendrolaelaps putte Huhta & Karg, 2010
Description of female (Figures 2A–2D): Idiosomal measurement 523 (490–590) length, 286 (272–294) width.
Gnathosoma: The tectum tripartite. Median process of tectum truncated and shorter than lateral processes (Figure 2C). Moveable digit with stronger basal teeth and a row of 8 smaller teeth; fixed digit with 4 large and 5 small teeth (Figure 2D).
Dorsum: Dorsal setae i3–I3 24–32, i2 36 (35–36) and I4 36 (36–38). Most of the z and Z setae series longer (44–51) than the i and I setae; Z3 62 long. Posterior setae Z5 (156) and S5 (136) distinctly longer than the other dorsal setae. The posterodorsal shield with faint structural pattern in the area of Z3–I4 and slightly punctate behind I4 (Figure 2A).
Venter: Sternal shield with a distinct transverse line between setae st1 and st2. Ventrianal shield with a transverse pattern anteriorly and pitted posteriorly, and bearing five pairs of setae (Vi1, Vi2, Vi3, Vi5, and Vz2). Ventrianal shield enlarged posteriorly and having a separated lobe at the posteriolateral margin. Peritremes reduced in length, reaching the level of setae st3 (Figure 2B).
Legs: Normal setae for the family except for the basal dorsal seta on femur IV being stouter than the others.
Specimens examined: Five females from Doğanca, Bafra, Samsun Province (Site-1) (41°39′05″N, 36°01′10.9″E), 1 April 2014; seven females, Doğanca, Bafra, Samsun Province (Site-2) (41°39′13.8″N, 36°00′45.7″E), 1 April 2014; three females from Site-2, 16 June 2014; two females, near Kuşcular village, Bafra, Samsun Province (41°35′16.8″N, 35°52′19.3″E), 19 May 2014.
Distribution: Finland (Huhta and Karg, 2010). This species is a new record for the Turkish fauna.
Remarks: All the morphological characters of both species were close to the species as described by Huhta and Karg (2010).
description: Published as part of Qayyoum, Muhammad Asif, Ozman-Sullivan, Sebahat K. & Khan, Bilal Saeed, 2016, Description of new records of the family Digamasellidae (Acari: Mesostigmata) from Kızılırmak Delta, Samsun Province, Turkey *, pp. 324-327 in Turkish Journal of Zoology 40 (3) on pages 326-327, DOI: 10.3906/zoo-1502-28, http://zenodo.org/record/10973766
Mesostigmata
Creators: name: Qayyoum, Muhammad Asif
name: Ozman-Sullivan, Sebahat K.
name: Khan, Bilal Saeed
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Mesostigmata

description: Key for the newly recorded species from Turkey
1. Tibia I with 5 (rarely 4) dorsal setae and sternal shield with 4 pairs of setae .................... Digamasellidae (2)
- Tibia I with 6 dorsal setae and sternal shield with 3 pairs of setae (st 4 in soft cuticle) ............................... Ascidae
2. Caudal setae slightly longer, three ends of the tectum nearly equal and distally split, movable digit of the female chelicerae bearing 4 teeth ............................................ .......................... Dendrolaelaps casualis Huhta & Karg, 2010
- Caudal setae much longer, the middle ramus of the tectum shorter and distally split, movable digit of the female chelicerae bearing more than 5 teeth ......................... ...................... Multidendrolaelaps putte Huhta & Karg, 2010
description: Published as part of Qayyoum, Muhammad Asif, Ozman-Sullivan, Sebahat K. & Khan, Bilal Saeed, 2016, Description of new records of the family Digamasellidae (Acari: Mesostigmata) from Kızılırmak Delta, Samsun Province, Turkey *, pp. 324-327 in Turkish Journal of Zoology 40 (3) on page 327, DOI: 10.3906/zoo-1502-28, http://zenodo.org/record/10973766
MOESM4 of Attenuation of Plasmodium falciparum in vitro drug resistance phenotype following culture adaptation compared to fresh clinical isolates in Cambodia
Creators: name: Suwanna Chaorattanakawee
name: Lanteri, Charlotte
name: Siratchana Sundrakes
name: Kritsanai Yingyuen
name: Panita Gosi
name: Nitima Chanarat
name: Saowaluk Wongarunkochakorn
name: Nillawan Buathong
name: Soklyda Chann
name: Worachet Kuntawunginn
name: Montri Arsanok
name: Lin, Jessica
name: Juliano, Jonathan
name: Tyner, Stuart
name: Mengchuor Char
name: Chanthap Lon
name: Saunders, David
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 4. Pfmdr1 copy number and alleles found in original and culture-adapted samples of 12 Plasmodium falciparum isolates from Cambodia.
Perustigmus alticolus Verhoeff 1941
Creators: name: Thofern, Detlef
name: Dupérré, Nadine
name: Harms, Danilo
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Chilopoda
Scolopendromorpha
Scolopendridae
Perustigmus
Perustigmus alticolus

description: 150­. Perustigmus alticolus Verhoeff, 1941
Verhoeff 1941: 64 (as P. alticolus n. sp.)
Type locality and specimens. Südperu [Southern Peru], Rio Sondondo, 2370 m, 18.4.1936; Sivia, 500 m, in Gartenerde [in garden soils]. Corrected in the reprint edition (Verhoeff, 1951) to Querobamba, 3560 m.
Dimensions. 45 mm Länge [length].
Type material. Syntypes 2. PERU: Ayacucho Region, Rió Sondono [ca. 13°56’S, 73°52’W].
Old type catalogue. Weidner (1960), p. 70, No, 69. Holotype.
Collection remarks. The specimens were collected during the Hamburger Südperu-Expedition in 1936. They are from Río Sondondo in Ayacucho, Perú.
Additional remarks. The specimen was destroyed by fire in World War II (Weidner 1960).
Current systematic position. Junior synonym of Cormocephalus andinus (Kraus, 1957). Also note that the genus name Perustigmus is unavailable because it was proposed without designating a type species. Shelley & Chagas (2005: 179) placed it in the synonymy of Cormocephalus.
description: Published as part of Thofern, Detlef, Dupérré, Nadine & Harms, Danilo, 2021, An annotated type catalogue of the centipedes (Myriapoda: Chilopoda) held in the Zoological Museum Hamburg, pp. 1-103 in Zootaxa 4977 (1) on page 85, DOI: 10.11646/zootaxa.4977.1.1, http://zenodo.org/record/4819677
Additional file 8: Figure S7. of A new method of finding groups of coexpressed genes and conditions of coexpression
Creators: name: Rajat Anand
name: Srikanth Ravichandran
name: Samrat Chatterjee
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Sociology
subject: FOS: Sociology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Power law observed in cluster size distribution using only selected clusters shows slope of â  1.15 of s between 5 to 74 with r2 of .99. (PDF 506 kb)
Pyxicephalus
Creators: name: Scott, Elizabeth
name: Visser, John D.
name: Yetman, Caroline A.
name: Oliver, Lauren
name: Broadley, Donald G.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Amphibia
Anura
Pyxicephalidae
Pyxicephalus

description: Key to the species of Pyxicephalus
1.a. Odontoids wider than long.......................................................... P. angusticeps New Status
1b. Odontoids longer than wide............................................................................. 2
2.a. Upper jaw free of barring in adults.............................................................. P. adspersus
2b. Upper jaw barred in adults.............................................................................. 3
3.a. Tympanum hypertrophied (width greater than eye diameter), and positioned less than one half eye diameter in distance from eye; toes with moderate webbing................................................................. P. obbianus
3b. Tympanum not hypertrophied (width less than or equal to eye diameter), and positioned more than one half eye diameter in distance from eye; toes with rudimentary webbing..................................................... P. edulis
description: Published as part of Scott, Elizabeth, Visser, John D., Yetman, Caroline A., Oliver, Lauren & Broadley, Donald G., 2013, Revalidation of Pyxicephalus angusticeps Parry, 1982 (Anura: Natatanura: Pyxicephalidae), a bullfrog endemic to the lowlands of eastern Africa, pp. 201-228 in Zootaxa 3599 (3) on page 204, DOI: 10.11646/zootaxa.3599.3.1, http://zenodo.org/record/217094
Additional file 6: Figure S5. of A new method of finding groups of coexpressed genes and conditions of coexpression
Creators: name: Rajat Anand
name: Srikanth Ravichandran
name: Samrat Chatterjee
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: For a matrix with 1000 genes and 10 conditions with expression values of all genes across conditions obtained from normal distribution with mean zero and standard deviationâ  =â  0.15, CG algorithm was applied and number of genes of each bicluster(size) is plotted against number of conditions of the corresponding bicluster. As the number of conditions in a bicluster increases, its size decreases. This suggests very less probability of obtaining a large size bi-cluster with large number of conditions. (PDF 298 kb)
Perustigmus rapax Verhoeff 1941
Creators: name: Thofern, Detlef
name: Dupérré, Nadine
name: Harms, Danilo
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Chilopoda
Scolopendromorpha
Scolopendridae
Perustigmus
Perustigmus rapax

description: 151. Perustigmus rapax Verhoeff, 1941
Verhoeff 1941: 63, figs 77–81 (as P. rapax n. sp.)
Type loccality and specimens. Südperu [Southern Peru], Sivia am [at the] Apurimac, 520 m, 13.5.1936; Uferzone des Apurimac [Apurimac river bank], 14.5.1936.
Dimensions. Entwickeltes Stück von 56 mm [adult specimen is 56 mm].
Type material. Holotype, 1 paratype. PERU: Ayacucho Region, Sivia [ca. 12°30’S, 73°51’W].
Old type caltalogue. Weidner (1960), p. 70, No, 70. Holotype, paratype 1.
Collection remarks. The specimens were collected during the Hamburger Südperu-Expedition in 1936 and come from “ Urwald unter Steinen und unter Rinde ” [rainforest under rocks and tree bark]. Apurimac refers to the Río Apurímac.
Additional remarks. The specimens were destroyed by fire in World War II (Weidner 1960).
Current systematic position. Junior synonym of Cormocephalus andinus (Kraus, 1957); see Perustigmus alticolus Verhoeff, 1941.
description: Published as part of Thofern, Detlef, Dupérré, Nadine & Harms, Danilo, 2021, An annotated type catalogue of the centipedes (Myriapoda: Chilopoda) held in the Zoological Museum Hamburg, pp. 1-103 in Zootaxa 4977 (1) on pages 85-86, DOI: 10.11646/zootaxa.4977.1.1, http://zenodo.org/record/4819677
Additional file 4: Figure S3. of A new method of finding groups of coexpressed genes and conditions of coexpression
Creators: name: Rajat Anand
name: Srikanth Ravichandran
name: Samrat Chatterjee
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Simulations with varying number of genes and conditions. In each of the plot, results for all noise levels and all runs of a fixed dimension input matrix are shown in one plot (A) Each plot depicts the clusters obtained for three noise levels for input matrices of number of genes = 1000 and number of condi-tions equals as given on top of each plot. The value of c* is also shown on the top of each plot. The cluster distribution doesn’t change much with different conditions. (B) Each plot depicts the clusters obtained for three noise levels for input matrices of number of number of conditions = 10 and number of genes equals as given on top of each plot. The value of c* is also shown on the top of each plot. The cluster distribution change and goes towards high cluster size as number of genes in input matrix increases. (PDF 1533 kb)
Additional file 3: Figure S1. of A new method of finding groups of coexpressed genes and conditions of coexpression
Creators: name: Rajat Anand
name: Srikanth Ravichandran
name: Samrat Chatterjee
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Representative examples of gene expression profiles of 8 genes and their discretization. (A-H) The DISCRETIZE step of the algorithm is shown for eight representative genes. Here, the expression level of genes at different conditions taken from an experimental data is plotted in left panels. In right panels, the sorted absolute normalized values of expression data for the respective genes are plotted. Arrows shows the jump above which the expression values are characterized as expressed by the algorithm and the corresponding expression values are shown by circled values here and in actual expression data in left panels in A. This jump is captured by taking the consecutive differences (current minus preceding) of sorted absolute normalized expression profile and identifying the index where this difference is maximum i.e. where jump occurs. (PDF 961 kb)
Schizoribautia peruana Verhoeff 1941
Creators: name: Thofern, Detlef
name: Dupérré, Nadine
name: Harms, Danilo
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Chilopoda
Geophilomorpha
Geophilidae
Schizoribautia
Schizoribautia peruana

description: 148. Schizoribautia peruana Verhoeff, 1941
Verhoeff 1941: 71, figs 97–100 (as Sch. peruana n. sp.)
Type locality and specimens. Südperu [Southern Peru], Sivia, 22.5.1936.
Dimensions. ♀ von 34 mm als auch Adolescens mit 25 mm [♀ has 34 mm and juvenile 25 mm].
Type material. Holotype, 1 paratype. PERU: Ayacucho Region, Sivia [ca. 12°30’S, 73°51’W].
Old type catalogue. Weidner (1960), p. 63, No. 37. Holotype, paratype 1.
Collection remarks. The specimens were collected during the Hamburger Südperu-Expedition in 1936 and sifted from rainforest soils (adult) and the river bank (juvenile).
Additional remarks. The specimens were destroyed by fire in World War II (Weidner 1960).
Current systematic position. Ribautia peruana (Verhoeff, 1941), transferred by Attems (1947: 143) as Ribautia peruana Verh. See also Pereira et al. (1995) who listed it as Ribautia (Schizoribautia) peruana Verhoeff, 1941.
Order Scolopendromorpha Pocock, 1895
description: Published as part of Thofern, Detlef, Dupérré, Nadine & Harms, Danilo, 2021, An annotated type catalogue of the centipedes (Myriapoda: Chilopoda) held in the Zoological Museum Hamburg, pp. 1-103 in Zootaxa 4977 (1) on pages 84-85, DOI: 10.11646/zootaxa.4977.1.1, http://zenodo.org/record/4819677
Additional file 2: Figure S1. of A new method of finding groups of coexpressed genes and conditions of coexpression
Creators: name: Rajat Anand
name: Srikanth Ravichandran
name: Samrat Chatterjee
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Shows the heatmap of the small dataset example and output of each step of our algorithm when applied on this dataset. (PDF 2220 kb)
Additional file 7: Figure S6. of A new method of finding groups of coexpressed genes and conditions of coexpression
Creators: name: Rajat Anand
name: Srikanth Ravichandran
name: Samrat Chatterjee
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: The value of c* as a function of number of genes in the input data matrix. The value of c* for number of genes = 19303 (number of genes present in liver data) predicted using the mean values is 1.0887 which matches with that ob-tained using actual simulation (1.093). (B) Cluster distribution shown using simulation gives value of c* = 1.093. Here, cluster’s correlation coefficient and size obtained for 10 runs of input data matrix of a fixed noise level are overlaid on top of each other. The cluster’s correlation coefficient and size obtained for input data matrices of two other noise levels are also overlaid here. (PDF 704 kb)
Additional file 5: Figure S4. of A new method of finding groups of coexpressed genes and conditions of coexpression
Creators: name: Rajat Anand
name: Srikanth Ravichandran
name: Samrat Chatterjee
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Computational Biology

description: Ability of SELECT function to improve relevance of output biclusters (A) Data matrices of size 200 × 100 to 216 × 108 are made corresponding to over-lap degree of 0 to 8 same as in Fig. 3. Here, highest noise level of 0.15 is used. (B) Average recovery scores and average relevance scores for a data matrix of fixed overlap degree corresponding to 10 runs are calculated and mean scores are plotted in figures for QUBIC algorithm and our algorithm with/without SELECT function. No change in recovery scores can be observed and an in-crease in relevance scores are obtained for algorithm with SELELCT function as compared to without SELECT function. (PDF 1431 kb)
Scolopocryptops miersii subsp. peruanus Verhoeff 1941
Creators: name: Thofern, Detlef
name: Dupérré, Nadine
name: Harms, Danilo
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Chilopoda
Scolopendromorpha
Scolopocryptopidae
Scolopocryptops
Scolopocryptops miersii
Scolopocryptops miersii peruanus verhoeff, 1941

description: 152. Scolopocryptops miersii peruanus Verhoeff, 1941
Verhoeff 1951: 65, figs 86–88 (as S. miersii, peruanus n. subsp.)
Type loccality and specimens. Südperu [Southern Peru], Rio Yukaes [Río Yauca], 2500 m, 26.4.1936.
Dimensions. Erwachsene von 50–53 mm [adults range from 50 to 53 mm].
Type material. Syntypes. PERU: Arequipa Region, Rió Yauca [ca. 15°42’S, 74°31’W].
Old type catalogue. Weidner (1960), p. 71, No. 88, Syntypes.
Collection remarks. The specimens were collected during the Hamburger Südperu-Expeditio n in 1936 and come from “ Urwald unter Steinen und unter Rinde ” [rainforest under rocks and tree bark].
Additional remarks. Verhoeff did not specifiy the number of specimens but the entire series was destroyed by fire in World War II (Weidner, 1960).
Current systematic position. Dinocryptops miersii peruanus (Verhoeff, 1941).
Order Scutigeromorpha Pocock, 1895
description: Published as part of Thofern, Detlef, Dupérré, Nadine & Harms, Danilo, 2021, An annotated type catalogue of the centipedes (Myriapoda: Chilopoda) held in the Zoological Museum Hamburg, pp. 1-103 in Zootaxa 4977 (1) on page 86, DOI: 10.11646/zootaxa.4977.1.1, http://zenodo.org/record/4819677
Additional file 5: Table S1. of Reconstruction of gene regulatory networks reveals chromatin remodelers and key transcription factors in tumorigenesis
Creators: name: Malysheva, Valeriya
name: Mendoza-Parra, Marco
name: Mohamed-Ashick Saleem
name: Gronemeyer, Hinrich
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: Chromatin remodelers/modulators differentially expressed during cell transformation. The table describes their reported function and involvement in cancer and provides the corresponding references (listed in Additional file 6). Abbreviations: BRD bromodomain, CHD chromodomain, HAT histoneacetyltransferases, HMT histonemethyltransferase, TDRD Tudor domain. (PDF 563 kb)
Additional file 4: Figure S4. of Reconstruction of gene regulatory networks reveals chromatin remodelers and key transcription factors in tumorigenesis
Creators: name: Malysheva, Valeriya
name: Mendoza-Parra, Marco
name: Mohamed-Ashick Saleem
name: Gronemeyer, Hinrich
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Gene expression levels of chromatin remodelers/modulators (CRMs) differentially expressed in the stepwise tumorigenesis system. CRMs are specified on the left together with the corresponding co-expression pathways. The heatmap shows the ratio of expression in BJEL or BJELM cells relative to the expression in BJ cells. The corresponding color code is shown on the right. (PDF 2.95 mb)