cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1 of Association of healthy lifestyle score with all-cause mortality and life expectancy: a city-wide prospective cohort study of cancer survivors
Creators: name: Sun, Ce
name: Li, Ke
name: Xu, Huan
name: Wang, Xiangjun
name: Qin, Pengzhe
name: Wang, Suixiang
name: Liang, Boheng
name: Xu, Lin
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer

description: Additional file 1: Figure S1. Study sample selection.
Characterization of Room Temperature Recrystallization Kinetics in Electroplated Copper Thin Films
Creators: Treger, Mikhail A.
Publisher: name: Columbia University
Year: 2015
Subjects: Materials science

description: The lack of an energetic model for the seemingly spontaneous room temperature recrystallization of electroplated copper thin ﬁlms has proven to be a technological bottleneck in the optimization of copper interconnect microstructure for the microelectronics industry. The inability to either achieve large grained interconnect microstructures by simple annealing or explain them by a posteriori analyses necessitates a new approach. Synchrotron x-ray diﬀraction was utilized to obtain real-time grain size, crystallographic texture, and strain data about the recrystallization in the geometrically simpler case of blanket electroplated Cu ﬁlms. The observation of a bimodal size distribution between as- deposited and recrystallizing grains during led to the development of a theoretical framework for combining x-ray data and the canonical Johnson-Mehl-Avrami-Kolmogorov (JMAK) kinetics model. Under this framework, analysis of variations in plated Cu ﬁlm and vapor deposited underlayer structures established that ﬁlm recrystallization speed is a function of initial 111 ﬁlm texture, and that this dependency is modulated by underlayer deposition conditions and plated ﬁlm thickness. Veriﬁcation of the new x-ray analysis was performed by combined use of complementary destructive and non-destructive characterization techniques which are more commonly accessible in the industrial setting. These included cross-sectional focused ion beam milling and scanning electron microscopy (x-FIB/SEM), electron back scatter diﬀraction (EBSD), and four-point probe electrical resistivity measurements. Comparative real-time in situ x-ray and resistivity studies revealed the formation of electron percolation paths which prematurely short-circuited the latter analysis. An eﬀective resistivity model is proposedto extend the current canonical one-dimensional analysis to be compatible with multi-dimensional recrystallization. X-ray analysis of plated ﬁlms whose initial stress state had been modiﬁed by delamination or the photoresist masking of substrate stresses revealed a signiﬁcant change to the recrystallization kinetics. Complementary real-time EBSD analysis localized the initiation of recrystallization to the free surface of the ﬁlm. The combination of this with quantitative activation energy measurements was then the basis for a comprehensive theoretical energetics model.
Characterization of a novel Ser/Thr kinase/phosphatase pair in Escherichia coli
Creators: Rajagopalan, Krithika
Publisher: name: Columbia University
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Biochemistry
subject: Phosphatases
subject: Protein kinases
subject: Escherichia coli
subject: Serine

description: Regulatory protein phosphorylation is a well conserved mechanism of signal transduction in all biological systems. In bacteria, signal transduction by phosphorylation is thought to occur primarily on His and Asp residues. However, phosphoproteomic surveys in phylogenetically diverse bacteria over the past decade have identified numerous proteins that are phosphorylated on serine (Ser) and/or threonine (Thr) residues. Consistently, genes encoding Ser/Thr kinases are present in many bacterial genomes such as E. coli, which encodes at least three Ser/Thr kinases. Since Ser/Thr phosphorylation is a stable modification, a dedicated phosphatase is necessary to allow reversible regulation. Bacterial Ser/Thr phosphatases which have extensive sequence and structural homology to eukaryotic Ser/Thr PP2C-type phosphatases are referred to as eukaryotic-like Ser/Thr phosphatases (eSTPs). eSTPs have been identified in a number of bacteria, but none have been reported in E. coli. The work presented in this thesis was aimed at identifying and biochemically characterizing a eukaryotic-like Ser/Thr phosphatase and its partner Ser/Thr kinase in E.coli.
      Chapter 3 describes the identification of a novel PP2C-like Ser/Thr phosphatase PphC encoded by an E. coli ORF, yegK, and characterization of its biochemical properties including kinetics, substrate specificity and sensitivity to known phosphatase inhibitors. I investigated differences in the activity of this protein in closely related E. coli strains. Finally, I demonstrated that this eSTP acts to dephosphorylate a novel Ser/Thr kinase which is encoded in the same operon suggesting that they most likely function as a pair in regulating Ser/Thr phosphorylation.
      Chapter 4 describes the biochemical characterization of a Ser/Thr kinase YegI in E. coli. I show that YegI is an active kinase with significant structural homology to eukaryotic Ser/Thr kinases. The YegI kinase domain is tethered to a cytoplasmic C-terminal domain containing two non-specific DNA binding Helix-hairpin helix motifs. I have identified enolase and elongation factor-Tu (EF-Tu) as potential physiological substrates of YegI and have demonstrated that phosphorylation of EF-Tu by YegI inhibits protein translation in vitro.
Precessing winds from the nucleus of the prototype Red Geyser?
Creators: name: Riffel, Rogemar A.
name: Nemmen, Rodrigo
name: Ilha, Gabriele S.
name: Rembold, Sandro B.
name: Roy, Namrata
name: Storchi-Bergmann, Thaisa
name: Riffel, Rogerio
name: Bundy, Kevin A.
name: Machado, Alice D.
name: Mallman, Nicolas D.
name: Schimoia, Jaderson S.
name: da Costa, Luiz N.
name: Maia, Marcio A. G.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Super-massive black holes (SMBH) are present at the center of most galaxies, with the related mass accretion processes giving origin to outflows in Active Galactic Nuclei (AGN). It has been presumed that only intense winds from luminous AGN were able to suppress star formation until the discovery of a new class of galaxies with no recent star formation and with the nucleus in a quiescent state showing kpc scale outflows. We used SDSS MaNGA and Gemini Integral Field Spectroscopy of the prototype Red Geyser Akira and found that the orientation of the outflow changes by about 50$^\circ$ from its nucleus to kpc scales. A possible interpretation is that the outflow is produced by a precessing accretion disk due to a misalignment between the orientation of the disk and the spin of the SMBH. The precession of the central source is also supported by a similar change in the orientation of the ionization pattern. Although similar behavior has commonly being reported for collimated relativistic jets, the precession of an AGN wide wind is reported here for the first time, implying on a larger work surface of the wind, which in turn increases the star formation suppression efficiency of the outflow.
description: 9 pages, 5 figures, accepted for publication in MNRAS
MOESM11 of Psychometric evaluation of a parent-rating and self-rating inventory for pediatric obsessive-compulsive disorder: German OCD Inventory for Children and Adolescents (OCD-CA)
Creators: name: Adam, Julia
name: Goletz, Hildegard
name: Svenja-Kristin Mattausch
name: Plück, Julia
name: Döpfner, Manfred
Publisher: name: figshare
Year: 2019
Subjects: subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 11. OCDS: Comparison of means between age groups and gender in the parent form (ANOVA). Results of ANOVA in the OCD subsample regarding comparison of means between age groups (6–10 years old and 11–18 years old) and gender in the parent form are presented.
Quantum Diffusions and Appell Systems
Creators: name: Ellinas, Demosthenes
Publisher: name: arXiv
Year: 2000
Subjects: subject: Quantum Physics (quant-ph)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: Within the algebraic framework of Hopf algebras, random walks and associated diffusion equations (master equations) are constructed and studied for two basic operator algebras of Quantum Mechanics i.e the Heisenberg-Weyl algebra (hw) and its q-deformed version hw_q. This is done by means of functionals determined by the associated coherent state density operators. The ensuing master equations admit solutions given by hw and hw_q-valued Appell systems.
description: Latex 12 pages, no figures. Submitted to Journal of Computational and Applied Mathematics. Special Issue of Proccedings of Fifth Inter. Symp. on Orthogonal Polynomaials, Special Functions and their Applications
Additional file 1 of RPE65-associated inherited retinal diseases: consensus recommendations for eligibility to gene therapy
Creators: name: Sodi, Andrea
name: Banfi, Sandro
name: Testa, Francesco
name: Della Corte, Michele
name: Passerini, Ilaria
name: Pelo, Elisabetta
name: Rossi, Settimio
name: Simonelli, Francesca
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology

description: Additional file 1: Table S1. Clinical manifestations of RPE65-associated IRD. Provides an overview of the consensus during the Round 1 and Round 2 questionnaires on statements relating to the clinical manifestations of RPE65.
title: On the Trail of Counter Radicalisation: An Examination of Strategies to Prevent the Threat of Islamist Extremism
Creators: name: Satterley, Shane
Publisher: name: Griffith University
Year: 2017
Subjects: subject: Counter radicalisation
subject: Islamist extremism
subject: Terrorism

description: The problem of Islamist inspired terrorism is a challenge that states around the world are struggling to deal with. This thesis focuses on the process of Islamist radicalisation that leads to this form of terrorism. It analyses strategies and programs that seek to counter or reverse the process of Islamist radicalisation. This thesis provides an explanatory model of radicalisation, a key component for first understanding how this process emerges and for analysing policies and programs. Semi-structured interviews were conducted in order to solicit best practices, lessons learned and challenges from key practitioners and policy makers in the area of counter radicalisation and deradicalisation in the United Kingdom, The Netherlands and Morocco. Also, this thesis provides new data concerning Australian Islamist terrorists and their educational status. These data show an overrepresentation of Australian terrorists in the STEM fields, particularly engineering. One of the key findings of this thesis is that radicalised individuals tend to lack particular epistemic skills, which have implications for pedagogy in general, and particularly counter radicalisation and deradicalisation programs. This thesis concludes with recommendations for counter radicalisation and deradicalisation policies and practice in Australia, drawn from broader contexts.
Morita equivalence of multidimensional noncommutative tori
Creators: name: Rieffel, Marc
name: Schwarz, Albert
Publisher: name: arXiv
Year: 1998
Subjects: subject: Quantum Algebra (math.QA)
subject: High Energy Physics - Theory (hep-th)
subject: Operator Algebras (math.OA)
subject: FOS: Mathematics
subject: FOS: Physical sciences
subject: 46L60; 46L85; 58B30

description: One can describe an $n$-dimensional noncommutative torus by means of an antisymmetric $n\times n$-matrix $θ$. We construct an action of the group $SO(n,n|\bf Z)$ on the space of antisymmetric matrices and show that, generically, matrices belonging to the same orbit of this group give Morita equivalent tori. Some applications to physics are sketched.
description: 13 pages. Minor comment corrected. (To appear in the International Journal of Mathematics.)
Nonlinear Conductance of Long Quantum Wires at a Conductance Plateau Transition: Where Does the Voltage Drop?
Creators: name: Micklitz, Tobias
name: Levchenko, A.
name: Rosch, A.
Publisher: name: Freie Universität Berlin
Year: 2012
Subjects: subject: 500 Naturwissenschaften und Mathematik::530 Physik

description: We calculate the linear and nonlinear conductance of spinless fermions in clean, long quantum wires, where short-ranged interactions lead locally to equilibration. Close to the quantum phase transition, where the conductance jumps from zero to one conductance quantum, the conductance obtains a universal form governed by the ratios of temperature, bias voltage, and gate voltage. Asymptotic analytic results are compared to solutions of a Boltzmann equation which includes the effects of three-particle scattering. Surprisingly, we find that for long wires the voltage predominantly drops close to one end of the quantum wire due to a thermoelectric effect.
Additional file 2 of Podiatrists’ views and experiences of using real time clinical gait analysis in the assessment and treatment of posterior tibial tendon dysfunction
Creators: name: Harradine, Paul
name: Gates, Lucy
name: Metcalf, Cheryl
name: Bowen, Catherine
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Additional file 2:
The Cascadia Region Earthquake Science Center Strategic Plan 2023-2027
Creators: name: Melgar, Diego
name: Thomas, Amanda M.
name: Sahakian, Valerie J.
name: Meigs, Andrew J.
name: Share, Pieter E.
name: Tobin, Harold J.
name: Melbourne, Timothy I.
name: Elizabeth, Jill
Publisher: name: CRESCENT Open Documents Library
Year: 2024

description: Document containing the 2023-2027 Cascadia Region Earthquake Science Center Strateivc Plan. 

Preferred Citation:

Melgar, D., Thomas, A.M., Sahakian, V.J., Meigs, A.J., Share, P.E., Tobin, H.J., Melbourne, T.I., Elizabeth, J. (2024). The Cascadia Region Earthquake Science Center Strategic Plan 2023-2027, CRESCENT Open Documents Library, doi: 10.5281/zenodo.11212220
Theory of Phonon-Assisted Adsorption in Graphene: Many-Body Infrared Dynamics
Creators: name: Sengupta, Sanghita
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We devise a theory of adsorption of low-energy atoms on suspended graphene membranes maintained at 10 K based on a model of atom-acoustic phonon interactions. Our primary technique includes a non-perturbative method which treats the dynamics of the multiple phonons in an exact manner within the purview of the Independent Boson Model. We present a study on the effects of the phonons assisting the renormalization as well as decay of the incident atom propagator and discuss results for the many-body adsorption rates for atomic hydrogen on graphene micromembranes. Additionally, we report similarities of this model with other branches of quantum field theories that include long-range interactions like quantum electrodynamics (QED) and perturbative gravity.
description: 13 pages, 9 figures
Electroproduction of Dijets at Small Jet Separation
Creators: name: Grindhammer, Guenter
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: Dijet production in deep-inelastic scattering (DIS) in the range 150 < Q^2 < 35000 GeV^2 has been measured by the H1 collaboration using the Durham jet algorithm in the laboratory frame. QCD calculations in next-to-leading order (NLO) are found to give a good description of the data when requiring a small minimum jet separation, which selects a dijet sample containing 1/3 of DIS events in contrast to approximately 1/10 with more typical jet analyses.
description: On behalf of the H1 collab., X International Workshop on Deep-Inelastic Scattering, DIS 2002, Cracow, 30 April - 4 May 2002, 4 pages, to be published in Acta Phys. Pol. B
Additional file 1 of Podiatrists’ views and experiences of using real time clinical gait analysis in the assessment and treatment of posterior tibial tendon dysfunction
Creators: name: Harradine, Paul
name: Gates, Lucy
name: Metcalf, Cheryl
name: Bowen, Catherine
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Additional file 1:
MOESM10 of Psychometric evaluation of a parent-rating and self-rating inventory for pediatric obsessive-compulsive disorder: German OCD Inventory for Children and Adolescents (OCD-CA)
Creators: name: Adam, Julia
name: Goletz, Hildegard
name: Svenja-Kristin Mattausch
name: Plück, Julia
name: Döpfner, Manfred
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Medicine
subject: Neuroscience
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Additional file 10. CLIN: Comparison of means between age groups and gender in the parent form (ANOVA). Results of ANOVA in the combined clinical sample regarding comparison of means between age groups (6–10 years old and 11–18 years old) and gender in the parent form are presented.
Effects of herbal mouthwashes on plaque and inflammation control for patients with gingivitis: a systematic review and meta-analysis of randomised controlled trials
Creators: name: Cai, He
name: Chen, Junyu
name: Perera, Nirmala
name: Liang, Xing
Publisher: name: La Trobe
Year: 2024
Subjects: classificationCode: 32
subject: Biomedical and clinical sciences
classificationCode: 3203
subject: Dentistry
subject: FOS: Clinical medicine
classificationCode: 3214
subject: Pharmacology and pharmaceutical sciences
classificationCode: 4208
subject: Traditional, complementary and integrative medicine

description: Objective. The aim of this study was to evaluate the overall effects of herbal mouthwashes as supplements to daily oral hygiene on plaque and inflammation control compared with placebos and chlorhexidine mouthwashes in the treatment of gingivitis. Methods. PubMed, EMBASE, Cochrane Database of Systematic Reviews, Cochrane Central Register of Controlled Trials, and grey literature databases were searched. Only randomised controlled trials comparing herbal mouthwashes with placebos or chlorhexidine in the daily oral hygiene of patient with gingivitis were included to compare the effect of different mouthwashes on plaque and inflammation control. Results. A total of 13 studies satisfied the eligibility criteria, and 11 studies were included in meta-analyses. Significant differences were observed in favour of herbal mouthwashes compared with placebos in both plaque- and inflammation-related indices (Quigley-Hein Plaque Index, QHPI: WMD = -0.61, 95% CI (-0.80, -0.42), P<0.001; Gingival Index, GI: -0.28 (-0.51, -0.06), P=0.01; Modified Gingival Index, MGI: -0.59 (-1.08, -0.11), P=0.02; Gingival Bleeding Index, GBI: -0.06 (-0.09, -0.04), P<0.001). No significant difference was found between herbal and chlorhexidine mouthwashes. Conclusions. Herbal mouthwashes have potential benefits in plaque and inflammation control as supplements to the daily oral hygiene of patients with gingivitis. Although no difference was observed between herbal and CHX mouthwashes in the selected studies, further high-quality RCTs are needed for more firm support before advising patients with gingivitis about whether they can use herbal mouthwashes to substitute for CHX mouthwashes or not.
Additional file 4 of Association of healthy lifestyle score with all-cause mortality and life expectancy: a city-wide prospective cohort study of cancer survivors
Creators: name: Sun, Ce
name: Li, Ke
name: Xu, Huan
name: Wang, Xiangjun
name: Qin, Pengzhe
name: Wang, Suixiang
name: Liang, Boheng
name: Xu, Lin
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer

description: Additional file 4: Figure S3. Estimation of mortality risks with or without interaction term in cancer- specific survivors. (A: without interaction term in breast cancer, B: with interaction term in breast cancer by sex, C: with interaction term in breast cancer by age, D: without interaction term in colorectal cancer, E: with interaction term in colorectal cancer by sex, F: with interaction term in colorectal cancer by age, G: without interaction term in lung cancer, H: with interaction term in lung cancer by sex, I: with interaction term in lung cancer by age, J: without interaction term in liver cancer, K: with interaction term in liver cancer by sex, L: with interaction term in liver cancer by age, M: without interaction term in nasopharynx cancer, N: with interaction term in nasopharynx cancer by sex, O: with interaction term in nasopharynx cancer by age, P: without interaction term in gastric cancer, Q: with interaction term in gastric cancer by sex, R: with interaction term in gastric cancer by age, S: with interaction term in nasopharynx cancer by age, T: without interaction term in kidney cancer, U: with interaction term in kidney cancer by sex, V: with interaction term in kidney cancer by age).
Effects of herbal mouthwashes on plaque and inflammation control for patients with gingivitis: a systematic review and meta-analysis of randomised controlled trials
Creators: name: H Cai
name: J Chen
name: Perera, Nirmala
name: X Liang
Publisher: name: La Trobe
Year: 2020
Subjects: Uncategorized

description: © 2020 He Cai et al. Objective. The aim of this study was to evaluate the overall effects of herbal mouthwashes as supplements to daily oral hygiene on plaque and inflammation control compared with placebos and chlorhexidine mouthwashes in the treatment of gingivitis. Methods. PubMed, EMBASE, Cochrane Database of Systematic Reviews, Cochrane Central Register of Controlled Trials, and grey literature databases were searched. Only randomised controlled trials comparing herbal mouthwashes with placebos or chlorhexidine in the daily oral hygiene of patient with gingivitis were included to compare the effect of different mouthwashes on plaque and inflammation control. Results. A total of 13 studies satisfied the eligibility criteria, and 11 studies were included in meta-analyses. Significant differences were observed in favour of herbal mouthwashes compared with placebos in both plaque- and inflammation-related indices (Quigley-Hein Plaque Index, QHPI: WMD = -0.61, 95% CI (-0.80, -0.42), P<0.001; Gingival Index, GI: -0.28 (-0.51, -0.06), P=0.01; Modified Gingival Index, MGI: -0.59 (-1.08, -0.11), P=0.02; Gingival Bleeding Index, GBI: -0.06 (-0.09, -0.04), P<0.001). No significant difference was found between herbal and chlorhexidine mouthwashes. Conclusions. Herbal mouthwashes have potential benefits in plaque and inflammation control as supplements to the daily oral hygiene of patients with gingivitis. Although no difference was observed between herbal and CHX mouthwashes in the selected studies, further high-quality RCTs are needed for more firm support before advising patients with gingivitis about whether they can use herbal mouthwashes to substitute for CHX mouthwashes or not (PROSPERO registration number: CRD42019122841).
Thordisa pinguis
Creators: name: Valdés, Ángel
Publisher: name: Zenodo
Year: 2002
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Nudibranchia
Discodorididae
Thordisa
Thordisa pinguis

description: THORDISA PINGUIS (EV. MARCUS &   ER. MARCUS, 1970)
 Pupsikus pinguis Marcus & Marcus, 1970a: 168–169, figs 33-39.
 Type material
HOLOTYPE (by monotypy): Mitirapa, Tahiti, French Polynesia 1964, 9 mm preserved length, leg. R. L. Sixberry (USNM 576010).
 Remarks
Described on the basis of a single, preserved specimen, this species has not been collected since. Based on the original description (Marcus & Marcus, 1970a), a positive identification of this species is not possible. The dissected holotype did not reveal additional information.
description: Published as part of Valdés, Ángel, 2002, A phylogenetic analysis and systematic revision of the cryptobranch dorids (Mollusca, Nudibranchia, Anthobranchia), pp. 535-636 in Zoological Journal of the Linnean Society 136 (4) on page 575, DOI: 10.1046/j.1096-3642.2002.00039.x, http://zenodo.org/record/10114672
Anomalous Diffusion in One-Dimensional Disordered Systems: A Discrete Fractional Laplacian Method
Creators: name: Padgett, J. L.
name: Kostadinova, E. G.
name: Liaw, C. D.
name: Busse, K.
name: Matthews, L. S.
name: Hyde, T. W.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mathematical Physics (math-ph)
subject: Spectral Theory (math.SP)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: This work extends the applications of Anderson-type Hamiltonians to include transport characterized by anomalous diffusion. Herein, we investigate the transport properties of a one-dimensional disordered system that employs the discrete fractional Laplacian, $(-Δ)^s,\ s\in(0,2),$ in combination with results from spectral and measure theory. It is a classical mathematical result that the standard Anderson model exhibits localization of energy states for all nonzero disorder in one-dimensional systems. Numerical simulations utilizing our proposed model demonstrate that this localization effect is enhanced for sub-diffusive realizations of the operator, $s\in (1,2),$ and that the super-diffusive realizations of the operator, $s\in (0,1),$ can exhibit energy states with less localized features. These results suggest that the proposed method can be used to examine anomalous diffusion in physical systems where strong interactions, structural defects, and correlated effects are present.
description: 28 pages, 3 figures, 1 table
Brownian motion on a smash line
Creators: name: Ellinas, Demosthenes
name: Tsohantjis, Ioannis
Publisher: name: arXiv
Year: 2000
Subjects: subject: Quantum Physics (quant-ph)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: Brownian motion on a smash line algebra (a smash or braided version of the algebra resulting by tensoring the real line and the generalized paragrassmann line algebras), is constructed by means of its Hopf algebraic structure. Further, statistical moments, non stationary generalizations and its diffusion limit are also studied. The ensuing diffusion equation posseses triangular matrix realizations.
description: Latex, 6 pages no figures. Submitted to Journal of Nonlinear Mathematical Physics. Special Issue of Proccedings of NEEDS'99
Extension of a Diophantine triple with the property $D(4)$
Creators: name: Trebješanin, Marija Bliznac
Publisher: name: arXiv
Year: 2019
Subjects: subject: Number Theory (math.NT)
subject: FOS: Mathematics
subject: 11D09, 11D45, 11J86

description: In this paper, we give an upper bound on the number of extensions of a triple to a quadruple for the Diophantine $m$-tuples with the property $D(4)$. We also confirm the conjecture of the uniqueness of such an extension in some special cases.
description: 28 pages; typos corrected, some changes made
Additional file 1: of The impact of a new exercise facility on physical activity at the community level: a non-randomized panel study in Japan
Creators: name: Kubota, Akio
name: Munehiro Matsushita
name: Smith, Ben
name: Takemi Sugiyama
name: Arao, Takashi
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Computational Biology

description: Table S1. Differences in outcome changes from baseline to follow-up between the sites (men). Table S2. Differences in outcome changes from baseline to follow-up between the sites (women). Table S3. Differences in outcome changes from baseline to follow-up between the sites (aged 30â 59 years). Table S4. Differences in outcome changes from baseline to follow-up between the sites (aged 60â 74 years). (DOCX 20 kb)
Matrix liberation process II: Relation to orbital free entropy
Creators: name: Ueda, Yoshimichi
Publisher: name: arXiv
Year: 2019
Subjects: subject: Operator Algebras (math.OA)
subject: Probability (math.PR)
subject: FOS: Mathematics

description: We investigate the concept of orbital free entropy from the viewpoint of matrix liberation process. We will show that many basic questions around the definition of orbital free entropy are reduced to the question of full large deviation principle for the matrix liberation process. We will also obtain a large deviation upper bound for a certain family of random matrices that is an essential ingredient to define the orbital free entropy. The resulting rate function is made up into a new approach to free mutual information.
description: 38 pages; revised and accepted version
Additional file 1 of Effects of localisation of uterine adenomyosis on outcome of in vitro fertilisation/intracytoplasmic sperm injection fresh and frozen-thawed embryo transfer cycles: a multicentre retrospective cohort study
Creators: name: Iwasawa, Takuya
name: Takahashi, Toshifumi
name: Maeda, Eri
name: Ishiyama, Koichi
name: Takahashi, Satoshi
name: Suganuma, Ryota
name: Matsuo, Koki
name: Tachibana, Masahito
name: Fukuhara, Rie
name: Shirasawa, Hiromitsu
name: Sato, Wataru
name: Kumazawa, Yukiyo
name: Terada, Yukihiro
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology

description: Additional file 1
Characterization of the Fluctuations in a Symmetric Ensemble of Rank-Based Interacting Particles
Creators: Garrido Garcia, Miguel Angel
Publisher: name: Columbia University
Year: 2021
Subjects: subject: Statistics
subject: FOS: Mathematics
subject: Mathematics
subject: Stochastic processes
subject: Stochastic differential equations

description: Within the context of rank-based interacting particle systems, we study the fluctuations in a symmetric ensemble around its stable distribution. This system is inspired by the classic Atlas model but represents its opposite pole since both the highest- and lowest-ranked particles will have non-zero drifts. In the first part of the dissertation, we derive a fine asymptotic analysis that includes a Law of Large Numbers. The lack of monotonicity of the ensemble requires that we develop alternative tools to those traditionally used in the analysis of the Atlas model. In the second part of the dissertation, we characterize the system’s fluctuations and show that, as the number of particles goes to infinity, they converge weakly to the mild solution of the Additive Stochastic Heat Equation on the real line with a symmetric initial condition. To establish this result, we use the technique proposed by Dembo and Tsai, 2017, where the Empirical Measure Process is used as a proxy for the ensemble’s fluctuations. We expect that a combination of our work, and the available knowledge about the Atlas model, could help draw a full picture of how a finite rank-based interacting particle system with a general drift structure fluctuates around its stationary distribution as the number of particles goes to infinity, a long-standing open question in the field.
Measurement of the inclusive semileptonic branching fraction of B mesons and |Vcb|
Creators: name: The Belle Collaboration
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: We present a measurement of the electron spectrum from inclusive semileptonic {\it B} decay, using 5.1 fb$^{-1}$ of $Υ(4S)$ data collected with the Belle detector. A high-momentum lepton tag was used to separate the semileptonic {\it B} decay electrons from secondary decay electrons. We obtained the branching fraction, ${\cal B}(B\to X e^+ ν) = (10.90 \pm 0.12 \pm 0.49)%$, with minimal model dependence. From this measurement, we derive a value for the Cabibbo-Kobayashi-Maskawa matrix element $|V_{cb}| = 0.0408 \pm 0.0010 {\rm (exp)} \pm 0.0025{\rm (th)}$.
description: 16 pages, 3 figures, 3 tables
Characterization of motor pool selectivity of neuromuscular degeneration and identification of molecular correlates of disease resistance in Type I spinal muscular atrophy
Creators: Lee, Justin
Publisher: name: Columbia University
Year: 2015
Subjects: subject: Spinal muscular atrophy
subject: Nervous system--Degeneration
subject: Neuromuscular diseases
subject: Neurosciences
subject: FOS: Clinical medicine
subject: Pathology
subject: Biology

description: Selective neuronal loss in response to loss or dysfunction of a ubiquitously expressed protein is a hallmark of neurodegenerative disease. Proximal spinal muscular atrophy (SMA) is caused by homozygous loss of the ubiquitously expressed survival motor neuron 1 (SMN1) gene, resulting in progressive neuromuscular weakness that eventually leads to flaccid paralysis and death from respiratory failure by two years of age in the most severely affected patients. Despite widespread motor neuron loss, certain motor pools are clinically spared. Type I SMA patients exhibit intercostal recession in conjunction with diaphragmatic sparing that produces a characteristic “bell-shaped chest.” Additionally, patients retain extraocular and external sphincter function, even in late disease stages.
      In order to fully define this differential vulnerability, I performed an extensive characterization of neuromuscular autopsies from Type I SMA patients and age-matched control patients. I found highly divergent degrees of motor unit degeneration, even within individual cranial nerves or a select anatomical region such as the neck. Remarkably, the diaphragm in a Type I SMA patient kept alive on life support for 17 years was still relatively preserved, despite virtually complete fibro-fatty infiltration in other muscles. Extraocular functions were also normal in this patient. These findings suggest that the molecular determinants of SMA-resistance provide indefinite protection against low SMN protein. Thus, identification and modulation of these genes and pathways represents a promising potential therapeutic strategy.
      Remarkably, this exquisite pattern of selectivity was preserved in the SMNΔ7 mouse, a widely used SMA mouse model. This suggests that the molecular determinants of differential vulnerability are conserved between mouse and human. Given the high degree of diversity between motor pools, I performed a comparative transcriptional microarray between multiple SMA-vulnerable and –resistant motor pools in healthy mice. This analysis revealed a small number of candidate therapeutic genes that segregate closely with vulnerability. I present a series of preliminary studies evaluating these targets in the SMNΔ7 mouse. Ongoing and future studies combine pharmacological, viral, and genetic approaches to modulate these candidate targets in the SMNΔ7 mouse and assess for improvements in neuromuscular pathology. Given the remarkable preservation of select motor pools in SMA patients, changing expression levels of the candidate targets I have identified may provide substantial clinical benefit.
Additional file 1 of Lymphocyte–monocyte–neutrophil index: a predictor of severity of coronavirus disease 2019 patients produced by sparse principal component analysis
Creators: name: Qi, Yingjie
name: Jia, Jian-an
name: Li, Huiming
name: Wan, Nagen
name: Zhang, Shuqin
name: Ma, Xiaoling
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Hematology

description: Additional file 1. Lymphocyte–monocyte–neutrophil index: a predictor of severity of coronavirus disease 2019 patients produced by sparse principal component analysis. Table S1: Principal component loadings for thirteen principal components produced by sparse principal component analysis. Table S2: Demographics and baseline laboratory markers of patients in the independent cohort (NanChang Cohort).
Additional file 3: of Insights into Klebsiella pneumoniae type VI secretion system transcriptional regulation
Creators: name: Barbosa, Victor
name: Lery, Leticia
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Multiple sequence alignment of ClpV, ClpB and ClpA proteins from Klebsiella pneumoniae Kp52.145. Green and yellow regions indicate the Clp_N domain; Red, blue and purple are the AAA, AAA2 and ClpB_D2-small domains, respectively. Black and blue boxes indicate the Walker A and Walker B domains; Arrows point to ATP binding site residues. “*”Identity of all aminoacid residues in the indicated column, “:”Similarity of pairs aligned, “.” Low similarity of pairs aligned. (PDF 58 kb)
Giant localised spin-Peltier effect due to ultrafast domainwalls motion in antiferromagnetic metals
Creators: name: Otxoa, Rubén M.
name: Atxitia, Unai
name: Roy, Pierre E.
name: Fesenko, Oksana Chubykalo
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Spin thermo-electric phenomena have attracted wide attention recently, e.g. the Spin Peltier effect (SPE) heat generation by magnonic spin currents. Here we find that the Spin Peltier ef-fect also manifests as a heat wave accompanying fast moving magnetic textures. High speed andextreme magnetic excitation localisation are paramount for efficient transfer of energy from thespin-degrees of freedom to electrons and lattice. While satisfying both conditions is subject to se-vere restrictions in ferromagnets, we find that domain walls in antiferomagnets can overcome theselimitations due to their potential ultrahigh mobility and ultra-small widths originating from the rel-ativistic contraction. To illustrate our findings, we show that electric current driven domain wallmotion in the antiferromagnetic metal Mn2Au can carry a localised heat wave with the maximumamplitude up to 1 K . Since domain walls are well localised nanoscale magnetic objects, this effecthas the potential for nanoscale heating sensing and functionalities.
Additional file 1 of The impact of the COVID-19 pandemic on healthcare-associated infections in intensive care unit patients: a retrospective cohort study
Creators: name: Baccolini, V.
name: Migliara, G.
name: Isonne, C.
name: Dorelli, B.
name: Barone, L. C.
name: Giannini, D.
name: Marotta, D.
name: Marte, M.
name: Mazzalai, E.
name: Alessandri, F.
name: Pugliese, F.
name: Ceccarelli, G.
name: De Vito, C.
name: Marzuillo, C.
name: De Giusti, M.
name: Villari, P.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Table S.1. Characteristics of the patients admitted to the main intensive care unit of Umberto I teaching hospital of Rome between 1st March and 4th April 2020. Results are expressed as number (percentage), mean (standard deviation) or median (interquartile range). Table S.2. Type and frequency of all healthcare-associated infections (HAIs) registered by the active surveillance system among the patients admitted to the main intensive care unit of Umberto I teaching hospital of Rome between 1st March and 4th April 2020. Results are expressed as number (percentage).
On generalized Abelian deformations
Creators: name: Dito, Giuseppe
Publisher: name: arXiv
Year: 1998
Subjects: subject: Quantum Algebra (math.QA)
subject: FOS: Mathematics
subject: 16S80

description: We study sun-products on $\R^n$, i.e. generalized Abelian deformations associated with star-products for general Poisson structures on $\R^n$. We show that their cochains are given by differential operators. As a consequence, the weak triviality of sun-products is established and we show that strong equivalence classes are quite small. When the Poisson structure is linear (i.e., on the dual of a Lie algebra), we show that the differentiability of sun-products implies that covariant star-products on the dual of any Lie algebra are equivalent each other.
description: LaTeX 16 pages. To be published in Reviews in Mathematical Physics
Artachaea Bergh 1882
Creators: name: Valdés, Ángel
Publisher: name: Zenodo
Year: 2002
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Nudibranchia
Dorididae
Artachaea

description: GENUS ARTACHAEA BERGH, 1882
 Artachaea Bergh, 1882: 231. Type species: Artachaea rubida Bergh, 1882, by monotypy.
 Remarks
 The genus Artachaea was described by Bergh (1882) based on the new species Artachaea rubida Bergh, 1882. He defined this new genus as having a not too hard consistency and a coarsely granulated dorsum. The anterior border of the foot is rounded, and apparently simple, but there are oral tentacles. There are no jaws and the radular teeth are finely denticulate. The penis is armed with spines.
 Bergh (1882) recognized the similarity of Artachaea with members of the genus Cadlina Bergh, 1878, but they are clearly differentiated by the presence of jaws. Unfortunately, the type material of Artachaea rubida is lost (K. Jensen, pers. comm.), and clarification of its systematic relationships is not possible. Eliot (1908) Eales (1938) and White (1950) assigned more species to this genus, some of them armed with copulatory spines.
description: Published as part of Valdés, Ángel, 2002, A phylogenetic analysis and systematic revision of the cryptobranch dorids (Mollusca, Nudibranchia, Anthobranchia), pp. 535-636 in Zoological Journal of the Linnean Society 136 (4) on pages 613-615, DOI: 10.1046/j.1096-3642.2002.00039.x, http://zenodo.org/record/10114672
A Generalized Jaynes-Cummings Hamiltonian and Supersymmetric Shape-Invariance
Creators: name: Aleixo, A. N. F.
name: Balantekin, A. B.
name: Ribeiro, M. A. Candido
Publisher: name: arXiv
Year: 2000
Subjects: subject: Quantum Physics (quant-ph)
subject: Mathematical Physics (math-ph)
subject: Nuclear Theory (nucl-th)
subject: Atomic Physics (physics.atom-ph)
subject: FOS: Physical sciences

description: A class of shape-invariant bound-state problems which represent two-level systems are introduced. It is shown that the coupled-channel Hamiltonians obtained correspond to the generalization of the Jaynes-Cummings Hamiltonian.
description: 7 pages
Two-dimensional second-order topological insulator in graphdiyne
Creators: name: Sheng, Xian-Lei
name: Chen, Cong
name: Liu, Huiying
name: Chen, Ziyu
name: Yu, Zhi-Ming
name: Zhao, Y. X.
name: Yang, Shengyuan A.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: A second-order topological insulator (SOTI) in $d$ spatial dimensions features topologically protected gapless states at its $(d-2)$-dimensional boundary at the intersection of two crystal faces, but is gapped otherwise. As a novel topological state, it has been attracting great interest, but it remains a challenge to identify a realistic SOTI material in two dimensions (2D). Here, based on combined first-principles calculations and theoretical analysis, we reveal the already experimentally synthesized 2D material graphdiyne as the first realistic example of a 2D SOTI, with topologically protected 0D corner states. The role of crystalline symmetry, the robustness against symmetry-breaking, and the possible experimental characterization are discussed. Our results uncover a hidden topological character of graphdiyne and promote it as a concrete material platform for exploring the intriguing physics of higher-order topological phases.
description: 6 pages, 5 figures
Homoiodoris Bergh 1882
Creators: name: Valdés, Ángel
Publisher: name: Zenodo
Year: 2002
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Nudibranchia
Dorididae
Homoiodoris

description: GENUS HOMOIODORIS BERGH, 1882
 Homoiodoris Bergh, 1882: 222–223. Type species: Homoiodoris japonica Bergh, 1882.
 Remarks
 Bergh (1882) described Homoiodoris, based on Homoiodoris japonica Bergh, 1904, as very similar to Archidoris. Homoiodoris is characterized by having a depressed body with the dorsum covered with large tubercles. The tubercles around the rhinophoral and branchial sheaths are very large and apparently distinct from the rest. The oral tentacles are short and thick with a lateral groove. Internally, the labial cuticle is smooth and the radula is composed of simple hamate teeth, the prostate is large and the vagina is armed with hooks.
 Homoiodoris appears to be very similar to Doris, but in the original description (Bergh, 1882), there is not enough information about other features of this genus, such as the shape of the anterior border of the foot, to permit a definitive conclusion. Unfortunately the type material of Homoiodoris japonica could not be located at ZMUC and is presumed lost. Major differences between Homiodoris and Doris are the presence of a large prostate and vaginal hooks in Homoiodoris.
 Homoiodoris novaezelandiae (Bergh, 1904) is clearly a species of Hoplodoris (see above). There are no more species assigned to this genus.
description: Published as part of Valdés, Ángel, 2002, A phylogenetic analysis and systematic revision of the cryptobranch dorids (Mollusca, Nudibranchia, Anthobranchia), pp. 535-636 in Zoological Journal of the Linnean Society 136 (4) on page 615, DOI: 10.1046/j.1096-3642.2002.00039.x, http://zenodo.org/record/10114672
Additional file 1 of Attitudes towards COVID-19 precautionary measures and willingness to work during an outbreak among medical students in Singapore: a mixed-methods study
Creators: name: Koh, Tricia Jia Wen
name: Ling, Abel Ho Zhi
name: Chiang, Christine Li Ling
name: Lee, Gabriel Sheng Jie
name: Tay, Hannah Si En
name: Yi, Huso
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 1.