PhD Thesis Excel Files
Creators: name: Koua, Ahossi Patrice
Publisher: name: Zenodo
Year: 2021
Subjects: Breeding progress
Drought
GWAS
LD block
MTAs
QTL
Yield components

description: <strong>Table 2.Sxl1.</strong> Full description of MTAs including 85 MTAs and 266 significant at P&lt;10-4 and P&lt;10-3, <br> respectively. <br> <strong>Table 2.Sxl2.</strong> Full description of MTAs (P&lt;10-4) underlying evaluated traits across both water regimes. <br> <strong>Table 2.Sxl3.</strong> Chromosomal LD and information on the SNP density across genomes. <br> <strong>Table 2.Sxl4.</strong> SNP cluster or QTLs regions associated with evaluated traits. <br> <strong>Table 2.Sxl5. </strong>Candidate genes in the regions of MTAs–clusters associated to a trait. <br> <strong>Table 2.Sxl6.</strong> Information on MTAs–clusters interacting with water regimes, and the majors and minor alleles average values. <br> <strong>Table 2.Sxl7.</strong> Candidate genes in the regions of MTAs–clusters interacting with water regimes. <br> <strong>Table 2.Sxl8. </strong>Pleiotropic SNP for GSC under both water regimes across two growing seasons. <strong>Table 2.Sxl9.</strong> Phenotypic data (BLUEs values) under two water regimes. <br> <strong>Table 3.Sxl1.</strong> Description of SNP number per chromosome and chromosomal LD. <br> <strong>Table 3.Sxl2.</strong> Full description of detected significant MTAs (10-4) from GWAS under both water regimes in 2017, 2018 and with the means values of both years. <br> <strong>Table 3.Sxl3.</strong> Summary of significant SNPs QTL detected in the marker*treatment interaction GWAS. <br> <strong>Table 3.Sxl4.</strong> Table of QTL regions in the marker*treatment interaction GWAS and alleles combination effect. <br> <strong>Table 3.Sxl5.</strong> GWAS results from four physiological traits and three final aboveground biomass traits highlighting SNPs with stable and pleiotropic effects. <br> <strong>Table 3.Sxl6.</strong> Candidate genes in the QTLs regions with stable and pleiotropic effects. <br> <strong>Table 3.Sxl7.</strong> Candidate genes in the QTLs with high significant marker*treatment interactions effects. <br> <strong>Table 3.Sxl8.</strong> Table of significant SNPs in the genome-wide SNP-SNP epistatic interaction. <br> <strong>Table 3.Sxl9.</strong> Candidate genes in the QTLs regions harboring SNPs with epistatic effects. <br> <strong>Table 3.Sxl10.</strong> Mean of alleles effect of AX-158576783 on YII and GY. <br> <strong>Table 3.Sxl11.</strong> Transcription factors binding sites in the promoter region of NADH-ubiquinone oxidoreductase, 20 Kd subunit genes TraesCS3A02G287600 that co-segregated with AX-158576783. <br> <strong>Table 4.Sxl1.</strong> Description of 443 MTAs under four treatments (DMN, DHN, RMN, RHN). <br> <strong>Table 4.Sxl2.</strong> Description of 27 QTL regions showing a number of significant SNPs by QTL. <br> <strong>Table 4.Sxl3.</strong> List 372 SNP involved in main GWAS and their pleiotropic level. <br> <strong>Table 4.Sxl4. </strong>List 524 SNP involved in SNP*N treatment interaction GWAS. <br> <strong>Table 4.Sxl5. </strong>List of candidate genes from QTL regions of main GWAS. <br> <strong>Table 4.Sxl6.</strong> Gene ontology classification grouping genes of the same GO category. <br> <strong>Table 4.Sxl7. </strong>Gene ontology classification relating biological process. <br> <strong>Table 4.Sxl8. </strong>Gene ontology classification relating molecular functions. <br> <strong>Table 4.Sxl9. </strong>List of candidate genes from QTL regions of QTL with pleiotropic effect and QTL regions interacting with N treatments.