cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 4: Figure S4. of Ascertainment bias from imputation methods evaluation in wheat
Creators: name: Brandariz, Sofía
name: Reymúndez, Agustín González
name: Lado, Bettina
name: Malosetti, Marcos
name: Garcia, Antonio
name: Quincke, Martín
name: Jarislav Von Zitzewitz
name: Castro, Marina
name: Matus, Iván
name: Pozo, Alejandro Del
name: Castro, Ariel
name: Gutiérrez, Lucía
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Hematology
subject: Plant Biology

description: Power (PO) and false positives rate (FPR) with 25 QTL, for major and minor QTL for ascertainment bias in imputation performance comparison in barley, with a α = 0.01 threshold. Each parameter was calculated for the combinations of: heritabilties (h 2 ), marker score matrices to simulate the QTL (i.e. Ysim-NImp , Ysim-MVN-EM and Ysim-Mean ), and marker score matrices to perform the GWAS analysis (i.e. G NImp, G MVN-EM and G Mean ). (PDF 34 KB)
Declarative Dynamic Power Management
Creators: name: Meier, Roman
Publisher: name: ETH Zurich
Year: 2022

description: Modern computers feature large power networks that are non-trivial to safely control. The same is true for the Enzian resarch computer, which has a power network with 37 voltage regulators, plus a CPU and an FPGA, both of which impose complex requirements on the order in which their power and clock inputs may be operated safely.
Initially, the command sequences to control the Enzians power network were written by hand, but this proved tedious and error-prone. Luckily, prior work in the systems group at ETH Zürich has already solved the problem of declarative static power management, but how to manage a dynamic platform that can change unexpectedly remained unadressed.
In this thesis, we develop the design for a dynamic power management solution that is able to keep track of the changes the hardware undergoes, react to faults and other undesireable platform states, and generate command sequences online to steer the platform into a new state. Our solution can read a platform description from a declarative specification and is therefore not limited to one pre-defined platform. We also show experimentally that our plan generation mechanisms are fast enough for online usage.
Additional file 2: of Two nucleotide second messengers regulate the production of the Vibrio cholerae colonization factor GbpA
Creators: name: Ankunda Kariisa
name: Grube, Alyssa
name: Tamayo, Rita
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Supplemental Figures S1 and S2: (S1) Manipulation of c-di-GMP in V. cholerae following ectopic expression of phosphodiesterase genes, and (S2) Growth of V. cholerae reporter strains on various carbon sources. (PDF 252Â kb)
Additional file 1: of Multimorbidity and the inequalities of global ageing: a cross-sectional study of 28 countries using the World Health Surveys
Creators: name: Afshar, Sara
name: Roderick, Paul
name: Kowal, Paul
name: Dimitrov, Borislav
name: Hill, Allan
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Science Policy
subject: Computational Biology

description: Shows the crude morbidity prevalence of chronic disease by country and region.
Additional file 21: Table S5. of CPAG: software for leveraging pleiotropy in GWAS to reveal similarity between human traits links plasma fatty acids and intestinal inflammation
Creators: name: Liuyang Wang
name: Oehlers, Stefan
name: Espenschied, Scott
name: Rawls, John
name: Tobin, David
name: Ko, Dennis
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: NHGRI raw trait names, modified names and their pre-defined groups. NHGRI disease names (“Raw traits”) are from the NHGRI GWAS Catalog. Closely related phenotypes were merged and phenotypes in the NHGRI GWAS Catalog that combined multiple diseases were removed for “modified phenotypes”. Each trait was assigned to one or two broad categories (autoimmune, infectious disease, cardiovascular/metabolic, body size, eyes, kidneys, nervous system, cancer, or other) based on medical knowledge of the authors prior to running the CPAG analysis. (DOCX 104 kb)
Additional file 13: Figure S11. of CPAG: software for leveraging pleiotropy in GWAS to reveal similarity between human traits links plasma fatty acids and intestinal inflammation
Creators: name: Liuyang Wang
name: Oehlers, Stefan
name: Espenschied, Scott
name: Rawls, John
name: Tobin, David
name: Ko, Dennis
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Plant Biology
subject: 60506 Virology

description: Hierarchical clustering of NHGRI human traits based on Morisita index. The hierarchical dendrogram and heat map of similarity for pairwise human traits were constructed based on the Morisita similarity index, and significance of similarity was measured using a hypergeometric test implemented in the CPAG program. Only traits having at least one significant association (p < 0.05) against other traits are shown here. Colors in the heat map are based on the similarity index and scaled according to the color key. Colored blocks along the y-axis of the heat map and color of text for trait names are indicative of the nine assigned categories of traits. (PDF 70 kb)
Gahrliepia (Gahrliepia) lundae Taufflieb 1965
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Trombiculidae
Gahrliepia
Gahrliepia lundae

description: Gahrliepia (Gahrliepia) lundae Taufflieb, 1965 a:
AFR
Gahrliepia lundae, Stekolnikov 2018b
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 23, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Additional file 9: Figure S7. of CPAG: software for leveraging pleiotropy in GWAS to reveal similarity between human traits links plasma fatty acids and intestinal inflammation
Creators: name: Liuyang Wang
name: Oehlers, Stefan
name: Espenschied, Scott
name: Rawls, John
name: Tobin, David
name: Ko, Dennis
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Plant Biology
subject: 60506 Virology

description: Hierarchical clustering of NHGRI human traits based on Simpson index. The hierarchical dendrogram and heat map of similarity for pairwise human traits were constructed based on the Simpson similarity index, and significance of similarity was measured using a hypergeometric test implemented in the CPAG program. Only traits having at least one significant association (p < 0.05) against other traits are shown here. Colors in the heat map are based on the similarity index and scaled according to the color key. Colored blocks along the y-axis of the heat map and color of text for trait names are indicative of the nine assigned categories of traits. (PDF 75 kb)
Additional file 15: Figure S13. of CPAG: software for leveraging pleiotropy in GWAS to reveal similarity between human traits links plasma fatty acids and intestinal inflammation
Creators: name: Liuyang Wang
name: Oehlers, Stefan
name: Espenschied, Scott
name: Rawls, John
name: Tobin, David
name: Ko, Dennis
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Plant Biology
subject: 60506 Virology

description: Hierarchical clustering of NHGRI human traits based on Cosine index. The hierarchical dendrogram and heat map of similarity for pairwise human traits were constructed based on the Cosine similarity index, and significance of similarity was measured using a hypergeometric test implemented in CPAG program. Only traits having at least one significant association (p < 0.05) against other traits are shown here. Colors in the heat map are based on the similarity index and scaled according to the color key. Colored blocks along the y-axis of the heat map and color of text for trait names are indicative of the nine assigned categories of traits. (PDF 77 kb)
Additional file 4: Figure S2. of CPAG: software for leveraging pleiotropy in GWAS to reveal similarity between human traits links plasma fatty acids and intestinal inflammation
Creators: name: Liuyang Wang
name: Oehlers, Stefan
name: Espenschied, Scott
name: Rawls, John
name: Tobin, David
name: Ko, Dennis
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Plant Biology
subject: 60506 Virology

description: Hierarchical clustering of NHGRI human traits based on Chaoâ  Sorensen index. The hierarchical dendrogram and heat map of similarity for pairwise human traits were constructed based on the Chaoâ  Sorensen similarity index, and significance of similarity was measured using a hypergeometric test implemented in the CPAG program. Only traits having at least one significant association (p < 0.05) against other traits are shown here. Colors in the heat map are based on the similarity index and scaled according to the color key. Colored blocks along the y-axis of the heat map and color of text for trait names are indicative of the nine assigned categories of traits. (PDF 79 kb)
Baricentricity of Spinal Alignment and Posture in Adolescent Idiopathic Scoliosis: Optical Diagnosis
Creators: name: Cukovic, Sasa
name: Luković, Vanja
name: Heidt, Christoph
name: Taylor, William R.
Publisher: name: ETH Zurich
Year: 2021

description: XXVIII Congress of the International Society of Biomechanics (ISB). Program & Abstracts
Additional file 20: Table S4. of CPAG: software for leveraging pleiotropy in GWAS to reveal similarity between human traits links plasma fatty acids and intestinal inflammation
Creators: name: Liuyang Wang
name: Oehlers, Stefan
name: Espenschied, Scott
name: Rawls, John
name: Tobin, David
name: Ko, Dennis
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: Hematology

description: Potentially novel modified trait pairs revealed by CPAG and a lack of any co-occurrences in PubMed (last visit on 20 March 2015). The two modified traits with significant similarity (p < 0.05, Fisher’s exact test after Bonferroni correction) are listed as “Trait1” and “Trait2”. The text was modified to remove general terms such as “levels” to broaden the PubMed query (see "Materials and methods"). The number of PubMed hits for each individual trait is given. Out of 277 modified trait pairs with p < 0.05, these 30 had no PubMed co-occurrences. (DOCX 19 kb)
Arab AFLI 2024: Persistent Identifiers Role in Promoting Arab Research Outputs
Creators: name: Mostafa, Mohamad
Publisher: name: Zenodo
Year: 2024
Subjects: PIDs
Arab Research
MENA
DOIs
Impact
Research Outputs

description: Research produced from the Arab world (in Arabic and English) still does not receive the global visibility and discoverability it deserves. There are several reasons for this, including the lack of adoption and use of persistent identifiers within various research paths, low awareness of the importance of persistent identifiers and their different types, and incomplete metadata.

This workshop has been delivered in collaboration with the Arab Federation for Libraries and Information (AFLI) and Mohamad highlights the different types of PIDs and their value in increasing visibility and impact. You can watch the full recording in Arabic at https://www.youtube.com/watch?v=ZHzt565EBCM.
Additional file 19: Table S3. of CPAG: software for leveraging pleiotropy in GWAS to reveal similarity between human traits links plasma fatty acids and intestinal inflammation
Creators: name: Liuyang Wang
name: Oehlers, Stefan
name: Espenschied, Scott
name: Rawls, John
name: Tobin, David
name: Ko, Dennis
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology

description: Potentially novel raw trait pairs revealed by CPAG and a lack of any co-occurrences in PubMed (last visit on 20 March 2015). The two raw traits with significant similarity (p < 0.05, Fisher’s exact test after Bonferroni correction) are listed as “Trait1” and “Trait2”. The text was modified to remove general terms such as “levels” to broaden the PubMed query (see "Materials and methods"). The number of PubMed hits for each individual trait is given. Out of 741 raw trait pairs with p < 0.05, these 43 had no PubMed co-occurrences. The trait pair we tested experimentally in zebrafish (Crohn’s disease and palmitoleic acid plasma levels) is highlighted in orange. (DOCX 20 kb)
Assessing the feasibility of reducing slow-wave activity with a wearable device in a home setting
Creators: name: Eicher, Corinne
name: Gallego Vázquez, Cristina
name: Schmid, Cinzia
name: Huber, Reto
name: Landolt, Hans-Peter
name: Seifritz, Erich
name: Da Poian, Giulia
Publisher: name: ETH Zurich
Year: 2022

description: Objective: Sleep deprivation has been shown to reverse depressive symptoms in approximately 60% of patients with major depression. Its therapeutic utility, however, is hampered by the typical relapse into the depressive state after recovery sleep and the detrimental physiological and psychological effects of prolonged wakefulness. This pilot aims to assess the feasibility of reducing slow-wave activity (SWA) by performing auditory stimulation using a wearable device (MHSL-Sleepband v3) in a home setting. 
Methods: We recorded frontal EEG in five healthy participants (24.3±2.3 years old) for six consecutive nights with tone application (verum) and six nights without (sham). The device precisely delivered tones upon detecting the slow-wave down-phase (before the negative peak) and N2/N3 sleep, using alternating 10-s ON-OFF window pairs. Device usability was assessed on a scale from 0, not at all difficult, to 5, very difficult. Sleep scoring (30 s epochs) was performed according to AASM guidelines. Separately considering ON and OFF windows, we used linear mixed effects models to analyze potential differences in SWA (0.5-4.0 Hz) between verum and sham stimulation nights. 
Results: All five participants used the wearable device for twelve nights. The device was considered easy to use (all participants scored < 2). Due to artefacts (signal loss of > 20%), four nights of one participant were excluded from analysis. Fifty-six nights were included in the analysis (n = 27 sham, n = 29 verum). We saw an effect of tone application, with SWA in OFF windows being lower on verum nights (166 μV2, 95%-CI from 68 to 266, p < .01) and unchanged in ON windows (p = 0.99) as compared to sham nights. When averaging SWA from ON and OFF windows we found no difference between verum and sham (p = 0.21). Sleep architecture (stage percentage) did not change due to conditions or nights (p > 0.05 for all stages).
Conclusions:
This proof-of-concept study in healthy volunteers suggests that down-phase sleep modulation with the MHSL-Sleepband v3 is feasible and reduces SWA in N2/N3 sleep. Future clinical trials are planned to evaluate the efficacy of lowering SWA without disrupting the overall sleep architecture in depressed patients.
Additional file 11: Figure S9. of CPAG: software for leveraging pleiotropy in GWAS to reveal similarity between human traits links plasma fatty acids and intestinal inflammation
Creators: name: Liuyang Wang
name: Oehlers, Stefan
name: Espenschied, Scott
name: Rawls, John
name: Tobin, David
name: Ko, Dennis
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Plant Biology
subject: 60506 Virology

description: Hierarchical clustering of NHGRI human traits based on Morisita-Horn index. The hierarchical dendrogram and heat map of similarity for pairwise human traits were constructed based on the Morisita-Horn similarity index, and significance of similarity was measured using a hypergeometric test implemented in CPAG program. Only traits having at least one significant association (p < 0.05) against other traits are shown here. Colors in the heat map are based on the similarity index and scaled according to the color key. Colored blocks along the y-axis of the heat map and color of text for trait names are indicative of the nine assigned categories of traits. (PDF 67 kb)
Onuphidae Kinberg 1865
Creators: name: Bharathidasan, Veeraiyan
name: Borisanova, Anastasia O.
name: Sarathy, Palanivel Partha
name: Murugesan, Perumal
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Polychaeta
Eunicida
Onuphidae

description: Family: Onuphidae Kinberg, 1865
Genus: Diopatra Audouin & Milne Edwards, 1833 (Fig. 2 & 3)
description: Published as part of Bharathidasan, Veeraiyan, Borisanova, Anastasia O., Sarathy, Palanivel Partha & Murugesan, Perumal, 2022, New entoproct-polychaete association recorded in the Bay of Bengal, southeastern coast of India, pp. 482-500 in Zootaxa 5100 (4) on pages 483-484, DOI: 10.11646/zootaxa.5100.4.2, http://zenodo.org/record/6224790
Validation of Internal Parameters of Adolescent Idiopathic Scoliosis Evaluated using ScolioSIM Solution – Preliminary Results
Creators: name: Cukovic, Sasa
name: Heidt, Christoph
name: Studer, Daniel
name: Huwyler, Gabriel
name: Luković, Vanja
name: Taylor, William R.
Publisher: name: ETH Zurich
Year: 2022

description: Abstract Book
Additional file 10: Figure S8. of CPAG: software for leveraging pleiotropy in GWAS to reveal similarity between human traits links plasma fatty acids and intestinal inflammation
Creators: name: Liuyang Wang
name: Oehlers, Stefan
name: Espenschied, Scott
name: Rawls, John
name: Tobin, David
name: Ko, Dennis
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Plant Biology
subject: 60506 Virology

description: Hierarchical clustering of NHGRI human traits based on Pearson correlation coefficient (PCC) index. The hierarchical dendrogram and heat map of similarity for pairwise human traits were constructed based on the PCC similarity index, and significance of similarity was measured using a hypergeometric test implemented in the CPAG program. Only traits having at least one significant association (p < 0.05) against other traits are shown here. Colors in the heat map are based on the similarity index and scaled according to the color key. Colored blocks along the y-axis of the heat map and color of text for trait names are indicative of the nine assigned categories of traits. (PDF 82 kb)
Additional file 1: Table S1. of CPAG: software for leveraging pleiotropy in GWAS to reveal similarity between human traits links plasma fatty acids and intestinal inflammation
Creators: name: Liuyang Wang
name: Oehlers, Stefan
name: Espenschied, Scott
name: Rawls, John
name: Tobin, David
name: Ko, Dennis
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Marine Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: SNPs exhibiting high levels of cross-phenotype associations. Only SNPs associated with more than five diseases/traits (51 SNPs) are shown. (DOCX 20 kb)
Additional file 16: Figure S14. of CPAG: software for leveraging pleiotropy in GWAS to reveal similarity between human traits links plasma fatty acids and intestinal inflammation
Creators: name: Liuyang Wang
name: Oehlers, Stefan
name: Espenschied, Scott
name: Rawls, John
name: Tobin, David
name: Ko, Dennis
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Plant Biology
subject: 60506 Virology

description: Hierarchical clustering of NHGRI human traits based on geometric index. The hierarchical dendrogram and heat map of similarity for pairwise human traits were constructed based on the geometric similarity index, and significance of similarity was measured using a hypergeometric test implemented in the CPAG program. Only traits having at least one significant association (p < 0.05) against other traits are shown here. Colors in the heat map are based on the similarity index and scaled according to the color key. Colored blocks along the y-axis of the heat map and color of text for trait names are indicative of the nine assigned categories of traits. (PDF 73 kb)
Additional file 18: Figure S16. of CPAG: software for leveraging pleiotropy in GWAS to reveal similarity between human traits links plasma fatty acids and intestinal inflammation
Creators: name: Liuyang Wang
name: Oehlers, Stefan
name: Espenschied, Scott
name: Rawls, John
name: Tobin, David
name: Ko, Dennis
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Marine Biology
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Density distributions of non-zero similarity values for inter-group pairwise comparisons and for pairwise comparisons within predefined groups. Pairwise comparisons within seven pre-defined groups generally show higher similarity than pairwise comparisons of traits between the pre-defined groups (inter-group). (PDF 25 kb)
Implementation of a Microsoft Hololens 2 for Supporting Diagnosis and Monitoring Treatment of Scoliosis
Creators: name: Krueger, Kirstin
name: Lakti, Xhensila
name: Vosseler, Carolin
name: Petruse, Radu E.
name: Cukovic, Sasa
name: Meixner, Gerrit
Publisher: name: ETH Zurich
Year: 2022

description: Book of Abstracts. IX International Conference on Computational Bioengineering
description: ISBN:978-989-99424-9-3
Additional file 5: Figure S3. of CPAG: software for leveraging pleiotropy in GWAS to reveal similarity between human traits links plasma fatty acids and intestinal inflammation
Creators: name: Liuyang Wang
name: Oehlers, Stefan
name: Espenschied, Scott
name: Rawls, John
name: Tobin, David
name: Ko, Dennis
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Relationship between the p value threshold for SNP inclusion and the number of significant trait pairs discovered by CPAG. Increasing the stringency of the p value threshold from 10−5 to 10−20 decreases the number of SNPs included in the CPAG analysis from 11,284 to 813. A similar number of statistically significant trait pairs is detected for a threshold of 10−5 to 10−8, but there was a decline in the number of significant pairs as the p value threshold was decreased to result in fewer included SNPs. Therefore, the detection of statistically significant pairs is robust against increasing false positive SNPs as the p value threshold is made less stringent, while making the p value threshold increasingly stringent decreases the discovery of significant trait pairs. (PDF 354 kb)
Competing Frames of Reference Using Vibrotactile Stimuli for Stimulus-Response Mapping Effects
Creators: name: Warren, Ashley D
Publisher: name: Purdue University Graduate School
Year: 2024
Subjects: classificationCode: 520401
subject: Cognition
classificationCode: 520406
subject: Sensory processes, perception and performance
classificationCode: 520404
subject: Memory and attention

description: The implementation of vibrotactile stimuli has grown in necessity where visual and auditory modalities are overloaded. However, how attention is oriented using vibrotactile information has been minimally investigated compared to other modalities, such as visual and auditory stimuli. The ability to elicit an appropriate mapping between a response from a specific vibrotactile stimulus can be explained in three different frames of reference accounts: internal, external, or remapping. Previous research has answered questions relating to the ability to use different reference frames but have yet to agree which frame orients attention for creating an automatic response. Using various stimulus-response mapping effects, the current study investigated how competing frames of reference are used to orient attention to select a response based on specific characteristics of vibrotactile stimuli. Experiment 1 validated the novel apparatus developed for this study by obtaining a stimulus-response compatibility effect. Experiment 2 investigated if an external or internal reference frame is used to orient attention automatically. The uncrossed-hands condition provided a replication of Experiment 1 and confirmed that a stimulus-response compatibility effect was present. For the crossed-hands condition, a diminished, reverse stimulus-response compatibility effect was present. Experiment 3 found no meaningful difference between a magnitude aligned (i.e., left associated with low frequency) versus misaligned (i.e., left associated with high frequency) conditions for frequency of vibrotactile stimuli, suggesting vibrotactile stimuli do not hold a mental magnitude line. Overall, the results from Experiments 1 and 2 provide evidence that processing of vibrotactile information is not reliant on only an internal reference frame but instead the external frame has some influence on selecting a motor response. Experiment 3 also suggests that task context influenced the stimulus and response mapping provided in the instructions, rather than the intrinsic, anatomical representation of vibrotactile stimuli.
Oecomys cleberi
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Oecomys
Oecomys cleberi

description: Oecomys cleberi
There were three different karyotypes for this species that occur in different localities (Table 8, Fig. 12). Karyotype 1: 2n = 80 and FN = 140. Autosomal complement: 31 metacentric and submetacentric pairs, and eight acrocentric pairs. Sex chromosomes: X, a large submetacentric; Y, an acrocentric. C-banding was performed, the X chromosome presented the short arm entirely heterochrmatic and the Y chromosome was entirely heterochromatic (Suárez-Villota et al. 2017, pp. 12, Fig. 4B). Karyotype 2: 2n = 80 and FN = 134. Autosomal complement: 28 biarmed pairs, and 11 acrocentric pairs. Sex chromosomes: X, a large submetacentric; Y, a medium acrocentric. C-banding metaphases exhibited blocks of constitutive heterochromatin on the pericentromeric region of all autosomes. The X chromosome presented the short arm entirely heterochromatic. The Y chromosome presented an heterochromatic block on the distal region of the long arm (Suárez-Villota et al. 2017, pp. 12, Fig. 4C). Karyotype 3: 2n = 80 and FN = 124. Autosomal complement: one large subtelocentric pair, 22 biarmed pairs medium to small decreasing in size, and 16 acrocentric pairs large to small decreasing in size. Sex chromosomes: X, a large submetacentric; Y, a medium acrocentric. C-banding metaphases exhibited blocks of constitutive heterochromatin on the pericentromeric region of the majority of autosomal pairs. The X chromosome presented the short arm entirely heterochromatic. The Y chromosome was almost entirely heterochromatic. Multiple NORs, were localized at the telomeric regions of the short arms of 1-2 medium-small acrocentric pairs (Andrades-Miranda et al. 2001b, pp. 272, Fig. 2B).
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 54, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Additional file 7: Figure S5. of CPAG: software for leveraging pleiotropy in GWAS to reveal similarity between human traits links plasma fatty acids and intestinal inflammation
Creators: name: Liuyang Wang
name: Oehlers, Stefan
name: Espenschied, Scott
name: Rawls, John
name: Tobin, David
name: Ko, Dennis
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Plant Biology
subject: 60506 Virology

description: Hierarchical clustering of NHGRI human traits based on Chaoâ  Jaccard index. The hierarchical dendrogram and heat map of similarity for pairwise human traits were constructed based on the Chaoâ  Jaccard similarity index, and significance of similarity was measured using a hypergeometric test implemented in the CPAG program. Only traits having at least one significant association (p < 0.05) against other traits are shown here. Colors in the heat map are based on the similarity index and scaled according to the color key. Colored blocks along the y-axis of the heat map and color of text for trait names are indicative of the nine assigned categories of traits. (PDF 78 kb)
Citizen Science in the Philippines: Coastal biodiversity engagements on a small island
Creators: name: Aldea, Kristian
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 410401
subject: Conservation and biodiversity
classificationCode: 410406
subject: Natural resource management

description: The community's extreme perception of volunteerism (97%) for conservation on a small island relates to the limited resources and coastline vulnerability. This probably results in various types of citizen scientists associated with different coastal biodiversity projects. To elucidate these aspects, I explored the public’s perception of participation in biodiversity conservation, the citizen science groups and their engagements (including profile by gender, age, and frequency of activity), as well as the potential ecological drawback of the engagement (primarily involving Independent Citizen Scientists). Results suggest that the public has a high perception of willingness to participate in citizen science (with three Types of Citizen Scientists). Gender prevalence in the participation is evident (suggesting viable options of participation for both genders) while the age and frequency of activities suggest that younger and more active individuals are significantly present in one type (Independent Citizen Scientists). Data gathering and public services demonstrate the contribution of citizen science to productive coastal biodiversity engagements on the island, although a potentially misguided activity, is also identified. It is emphasized, however, that this does not discourage any type of citizen scientists. This study recommends policy formulation and extended interventions in the island’s coastal biodiversity programs.
Additional file 2: Figure S1. of CPAG: software for leveraging pleiotropy in GWAS to reveal similarity between human traits links plasma fatty acids and intestinal inflammation
Creators: name: Liuyang Wang
name: Oehlers, Stefan
name: Espenschied, Scott
name: Rawls, John
name: Tobin, David
name: Ko, Dennis
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Hematology

description: Comparison of SNP, SNP_LD, and gene-based similarity approaches. a The fraction of trait pairs with significant overlap is greatest using the SNP_LD method. Trait overlap for the NHGRI GWAS Catalog was evaluated based on exact SNP overlap, SNP overlap taking LD into consideration (SNPs with r 2 > 0.6 are considered overlapping), and by genes (SNPs assigned to genes by NHGRI GWAS Catalog). Significance of overlap was measured using Fisherâ  s exact test and p values were Bonferroni-corrected for multiple-test comparisons. b Comparing p values for trait pairs reveals lower p values using the SNP_LD method. For trait pairs with overlap detected by two of the methods the â  log(p value) was plotted for each method. While the â  log(p values) were correlated, they deviated towards greater significance for the SNP_LD method. (PDF 114 kb)
Gahrliepia (Gahrliepia) marshi Traub and Morrow 1957
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Trombiculidae
Gahrliepia
Gahrliepia marshi

description: Gahrliepia (Gahrliepia) marshi Traub and Morrow, 1957:
ORI
Gahrliepia (Gateria) marshi, Vercammen-Grandjean 1968c
Scrobiculata (Scrobiculata) marshi, Wen & Gui 2000 [picta group]
Gahrliepia marshi, Chaisiri et al. 2016; Stekolnikov 2021
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 23, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Additional file 8: Figure S6. of CPAG: software for leveraging pleiotropy in GWAS to reveal similarity between human traits links plasma fatty acids and intestinal inflammation
Creators: name: Liuyang Wang
name: Oehlers, Stefan
name: Espenschied, Scott
name: Rawls, John
name: Tobin, David
name: Ko, Dennis
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Plant Biology
subject: 60506 Virology

description: Hierarchical clustering of NHGRI human traits based on Sorensen index. The hierarchical dendrogram and heat map of similarity for pairwise human traits were constructed based on the Sorensen similarity index, and significance of similarity was measured using a hypergeometric test implemented in the CPAG program. Only traits having at least one significant association (p < 0.05) against other traits are shown here. Colors in the heat map are based on the similarity index and scaled according to the color key. Colored blocks along the y-axis of the heat map and color of text for trait names are indicative of the nine assigned categories of traits. (PDF 76 kb)
Additional file 12: Figure S10. of CPAG: software for leveraging pleiotropy in GWAS to reveal similarity between human traits links plasma fatty acids and intestinal inflammation
Creators: name: Liuyang Wang
name: Oehlers, Stefan
name: Espenschied, Scott
name: Rawls, John
name: Tobin, David
name: Ko, Dennis
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Plant Biology
subject: 60506 Virology

description: Hierarchical clustering of NHGRI human traits based on Jaccard index. The hierarchical dendrogram and heat map of similarity for pairwise human traits were constructed based on the Jaccard similarity index, and significance of similarity was measured using a hypergeometric test implemented in the CPAG program. Only traits having at least one significant association (p < 0.05) against other traits are shown here. Colors in the heat map are based on the similarity index and scaled according to the color key. Colored blocks along the y-axis of the heat map and color of text for trait names are indicative of the nine assigned categories of traits. (PDF 75 kb)
Oecomys concolor
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Oecomys
Oecomys concolor

description: Oecomys concolor
Karyotype: 2n = 60 and FN = 62. Autosomal complement: one large subtelocentric pair, one small metacentric pair, and 27 acrocentric pairs large to small decreasing in size. Sex chromosomes: X, a large submetacentric; Y, a medium subtelocentric (Gardner & Patton 1976, pp. 12, Fig. 5C). Baker et al. (1983) also reported a diploid number of 2n = 58 and 2n = 60 for O. concolor, and performed the G-banding of these karyotypes. The karyotype of O. concolor reported by Gardner & Patton (1976) was very similar to that presented for O. catherinae. However, systematic works of the genus (Gomes-Júnior et al. 2016; Suárez-Villota et al. 2017) recognized this karyotype as belonging to O. concolor.
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 55, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Ergebnisse LehrstellenPuls November 2022
Creators: name: Bolli, Thomas
name: Caves, Katherine Marie
name: Dändliker, Lena
name: Morlet, Guillaume Maxence Augusti
name: Rageth, Ladina
name: Renold, Ursula
name: Sritharan, Aranya
Publisher: name: ETH Zurich
Year: 2022
Subjects: Berufsbildung
Lehrstellen
Corona

description: LehrstellenPuls – Faktenblatt
Additional file 14: Figure S12. of CPAG: software for leveraging pleiotropy in GWAS to reveal similarity between human traits links plasma fatty acids and intestinal inflammation
Creators: name: Liuyang Wang
name: Oehlers, Stefan
name: Espenschied, Scott
name: Rawls, John
name: Tobin, David
name: Ko, Dennis
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Plant Biology
subject: 60506 Virology

description: Hierarchical clustering of NHGRI human traits based on connection specificity index (CSI). The hierarchical dendrogram and heat map of similarity for pairwise human traits were constructed based on the CSI, and significance of similarity was measured using a hypergeometric test implemented in the CPAG program. Only traits having at least one significant association (p < 0.05) against other traits are shown here. Colors in the heat map are based on the similarity index and scaled according to the color key. Colored blocks along the y-axis of the heat map and color of text for trait names are indicative of the nine assigned categories of traits. (PDF 142 kb)
Résultats du «Pouls des places d’apprentissage» de novembre 2022
Creators: name: Bolli, Thomas
name: Caves, Katherine Marie
name: Dändliker, Lena
name: Morlet, Guillaume Maxence Augusti
name: Rageth, Ladina
name: Renold, Ursula
name: Sritharan, Aranya
Publisher: name: ETH Zurich
Year: 2022
Subjects: Vocational Education and Training
Apprenticeship
Corona

description: Pouls des places d’apprentissage – Fiche d’information