cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
A review of COVID-19-associated mucormycosis in India
Creators: name: Tomar, Shubham
name: Khadke, Vidhatri
name: Sohail, Muhammad R.
name: Suresh, Surya
name: Khadke, Sumanth
name: Khanuja, Purvi K.
name: Khanna, Arjun
Publisher: name: Medip Academy
Year: 2022

description:
The resurgence of COVID-19 with the delta variant has accompanied a doubling in the prevalence of COVID-19-associated mucormycosis (CAM) in India. The prevalence grew to 80 times that of the global average. In this review, we describe the epidemiology, the clinical presentation, and treatment of CAM. We conducted a literature search on the PubMed, Google Scholar, Embase, and Harvard Library databases. The cytokine storm with high interleukin-6 (IL-6), hyperglycemia, ketoacidosis culminates into impaired endothelial and immune response, causing improved survival of the fungus. The most common presentation is rhinoorbital cerebral mucormycosis followed by pulmonary mucormycosis in patients with COVID-19. CAM patients have active or prior pulmonary tuberculosis, hyperglycemia, or a prolonged stay in the intensive care unit (ICU). A recent history of steroid medications and a high prevalence of tuberculosis (TB) may have contributed to an increased prevalence of CAM infections. Hypoxemic COVID-19 patients have a substantial improvement with steroid treatment but increases the risk of opportunistic infections. Although radiological signs have been described but the most common presentation is a subtle sign of eye, nasal, oral cavity, or pulmonary symptoms which requires high index of suspicion. Hence, one should not rely on radiological signs alone. Amphotericin B or isavuconazole along with surgical debridement is the treatment of choice for CAM. Early admission, diagnosis, and treatment lead to favorable outcomes.
Additional file 1 of Efficacy and acceptability of using wearable activity trackers in older adults living in retirement communities: a mixed method study
Creators: name: Zhang, Zhanjia
name: Giordani, Bruno
name: Margulis, Alayna
name: Chen, Weiyun
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Pharmacology
subject: Science Policy
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Computational Biology

description: Additional file 1: Supplementary File. Themes and Sample Quotes from Individual Interviews.
MR image reconstruction using deep density priors
Creators: name: Tezcan, Kerem C.
name: Baumgartner, Christian F.
name: Luechinger, Roger
name: Pruessmann, Klaas P.
name: Konukoglu, Ender
Publisher: name: arXiv
Year: 2017
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Image and Video Processing (eess.IV)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: Algorithms for Magnetic Resonance (MR) image reconstruction from undersampled measurements exploit prior information to compensate for missing k-space data. Deep learning (DL) provides a powerful framework for extracting such information from existing image datasets, through learning, and then using it for reconstruction. Leveraging this, recent methods employed DL to learn mappings from undersampled to fully sampled images using paired datasets, including undersampled and corresponding fully sampled images, integrating prior knowledge implicitly. In this article, we propose an alternative approach that learns the probability distribution of fully sampled MR images using unsupervised DL, specifically Variational Autoencoders (VAE), and use this as an explicit prior term in reconstruction, completely decoupling the encoding operation from the prior. The resulting reconstruction algorithm enjoys a powerful image prior to compensate for missing k-space data without requiring paired datasets for training nor being prone to associated sensitivities, such as deviations in undersampling patterns used in training and test time or coil settings. We evaluated the proposed method with T1 weighted images from a publicly available dataset, multi-coil complex images acquired from healthy volunteers (N=8) and images with white matter lesions. The proposed algorithm, using the VAE prior, produced visually high quality reconstructions and achieved low RMSE values, outperforming most of the alternative methods on the same dataset. On multi-coil complex data, the algorithm yielded accurate magnitude and phase reconstruction results. In the experiments on images with white matter lesions, the method faithfully reconstructed the lesions. Keywords: Reconstruction, MRI, prior probability, machine learning, deep learning, unsupervised learning, density estimation
description: Published in IEEE TMI. Main text and supplementary material, 19 pages total
Additional file 3 of In silico comparative analysis of GGDEF and EAL domain signaling proteins from the Azospirillum genomes
Creators: name: Mata, Alberto
name: Pacheco, César
name: Pérez, José Cruz
name: Sáenz, Martha
name: Baca, Beatriz
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: Table S3 and Table S4. Table S3. Repertoire of GGDEF, EAL and GGDEF-EAL predicted proteins, organization, and domain architectures found in the selected Azospirillum spp. genomes. Table S4. Accession numbers of GGDEF, EAL and hybrid proteins encoded by genes of select the analyzed Azospirillum genomes. Data extracted from http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE=Proteins and http:// and http://smart.embl-heidelberg.de/ . (DOCX 268 kb)
Additional file 1 of On the value and limitations of incorporating a “clean phase” into the surgical treatment of prosthetic joint infections – an illustrative cadaveric study using fluorescent powder
Creators: name: Vles, Georges
name: Bossen, Jeroen
name: Kloos, Johannes
name: Debeer, Philippe
name: Ghijselings, Stijn
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Physiology
subject: Biotechnology
subject: Ecology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. Supplement 1.
Stellar Dynamics and Star-Formation Histories of z $\sim$ 1 Radio-loud Galaxies
Creators: name: Barišić, Ivana
name: van der Wel, Arjen
name: Bezanson, Rachel
name: Pacifici, Camilla
name: Noeske, Kai
name: Mateos, Juan C. Muñoz -
name: Franx, Marijn
name: Smolčić, Vernesa
name: Bell, Eric F.
name: Brammer, Gabriel
name: Calhau, João
name: Chauké, Priscilla
name: van Dokkum, Pieter G.
name: van Houdt, Josha
name: Gallazzi, Anna
name: Labbé, Ivo
name: Maseda, Michael V.
name: Muzzin, Adam
name: Sobral, David
name: Straatman, Caroline
name: Wu, Po-Feng
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We investigate the stellar kinematics and stellar populations of 58 radio-loud galaxies of intermediate luminosities (L$_{3 GHz}$ $>$ 10$^{23}$ W Hz$^{-1}$ ) at 0.6 < z < 1. This sample is constructed by cross-matching galaxies from the deep VLT/VIMOS LEGA-C spectroscopic survey with the VLA 3 GHz dataset. The LEGA-C continuum spectra reveal for the first time stellar velocity dispersions and age indicators of z $\sim$ 1 radio galaxies. We find that $z\sim 1$ radio-loud AGN occur exclusively in predominantly old galaxies with high velocity dispersions: $σ_*>$ 175 km s$^{-1}$, corresponding to black hole masses in excess of $10^8$ M$_{\odot}$. Furthermore, we confirm that at a fixed stellar mass the fraction of radio-loud AGN at z $\sim$ 1 is 5 - 10 times higher than in the local universe, suggesting that quiescent, massive galaxies at z $\sim$ 1 switch on as radio AGN on average once every Gyr. Our results strengthen the existing evidence for a link between high black-hole masses, radio loudness and quiescence at z $\sim$ 1.
description: 10 pages, 8 figures, 1 table. Accepted for publication in The Astrophysical Journal
title: 03_0204
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
Trading quantum states for temporal profiles: tomography by the overlap
Creators: name: Tiedau, Johannes
name: Shchesnovich, Valery S.
name: Mogilevtsev, Dmitri
name: Ansari, Vahid
name: Harder, Georg
name: Bartley, Tim
name: Korolkova, Natalia
name: Silberhorn, Christine
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Quantum states and the modes of the optical field they occupy are intrinsically connected. Here, we show that one can trade the knowledge of a quantum state to gain information about the underlying mode structure and, vice versa, the knowledge about the modal shape allows one to perform a complete tomography of the quantum state. Our scheme can be executed experimentally using the interference between the signal and probe states on an unbalanced beam splitter with a single on/off-type detector. By changing the temporal overlap between the signal and the probe, the imperfect interference is turned into a powerful tool to extract the information about the signal mode structure. A single on/off detector is already sufficient to collect the necessary measurement data for the reconstruction of the diagonal part of the density matrix of an arbitrary multi-mode signal. Moreover, we experimentally demonstrate the feasibility of our scheme with just one control parameter -- the time-delay of a coherent probe field.
description: 11 pages, 4 figures
Llandaff Cathedral Bombing
Creators: name: Project Team, Their Finest Hour
Publisher: name: University of Oxford
Year: 2024
Subjects: classificationCode: 430304
subject: British history
classificationCode: 430308
subject: European history (excl. British, classical Greek and Roman)
classificationCode: 430316
subject: International history

description: Llandaff Cathedral:
- On the 2nd January 1941, Llandaff Cathedral was bombed.
- The German parachute landmine became snagged on one of the towers and landed in the rememberance garden.
- The remains of the bomb were gathered, including parts of the parachute.
- Llandaff Cathedral was the most damaged Cathedral in the UK apart from Coventry.
 - For more information see the "Llandaff Society Occasional Paper 6".More personal story:
- Contributor's father came from several generations of soldiers, and fought as a career officer in the Golden Arrow division of the Indian Army.
- Contributor's father was a captain in the campaign against the Japanese and fought in Egypt in the 1950s. They fought with screw guns (small, light artillery). He won the military cross as Colonel John Kenyon, and was given an OBE when he retired.
MOESM4 of Normal sleep bouts are not essential for C. elegans survival and FoxO is important for compensatory changes in sleep
Creators: name: Bennett, Heather
name: Khoruzhik, Yulia
name: Hayden, Dustin
name: Huiyan Huang
name: Sanders, Jarred
name: Walsh, Melissa
name: Biron, David
name: Hart, Anne
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Physiology
subject: Ecology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 4: Notch ligands and sleep during L4/A lethargus. A) Increased time in lethargus results in increased sleep in animals with decreased lag-2 function. Detailed breakdown of sleep metrics for wild type and lag-2(q420) animals at 25.5 °C. Average sleep bout duration in seconds and average number of sleep bouts is reported per hour. Statistical significance assessed by student’s two tailed t-test; * denotes p
Two-dimensional plasmons in the random impedance network model of disordered thin-film nanocomposites
Creators: name: Olekhno, Nikita
name: Beltukov, Yaroslav
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: Random impedance networks are widely used as a model to describe plasmon resonances in disordered metal-dielectric nanocomposites. In order to study thin films, two-dimensional networks are often used despite the fact that such networks correspond to a two-dimensional electrodynamics [J.P. Clerc et al, J. Phys. A 29, 4781 (1996)]. In the present work, we propose a model of two-dimensional systems with three-dimensional Coulomb interaction and show that this model is equivalent to a planar network with long-range capacitive connections between sites. In a case of a metal film, we get a known dispersion $ω\propto \sqrt{k}$ of plane-wave two-dimensional plasmons. In the framework of the proposed model, we study the evolution of resonances with decreasing of metal filling factor. In the subcritical region with metal filling $p$ lower than the percolation threshold $p_c$, we observe a gap with Lifshitz tails in the spectral density of states (DOS). In the supercritical region $p>p_c$, the DOS demonstrates a crossover between plane-wave two-dimensional plasmons and resonances associated with small clusters.
description: 8 pages, 3 figures, revtex; references added
Mecoptera collection of the Senckenberg German Entomological Institute, SDEI (as of December 2009)
Creators: name: Taeger, Andreas
name: Kutzscher, Christian
Publisher: name: figshare
Year: 2020
Subjects: subject: 60301 Animal Systematics and Taxonomy
subject: FOS: Biological sciences
subject: Zoology

description: Photographs of the drawers of the Lepidoptera Mecoptera of the Senckenberg Deutsches Entomologisches Institut (Senckenberg German Entomological Institute, SDEI) (as of December 2009).
Additional file 1 of Digital PCR applications for the diagnosis and management of infection in critical care medicine
Creators: name: Merino, Irene
name: de la Fuente, Amanda
name: Domínguez-Gil, Marta
name: Eiros, José María
name: Tedim, Ana P.
name: Bermejo-Martín, Jesús F.
Publisher: name: figshare
Year: 2022
Subjects: subject: Microbiology
subject: FOS: Biological sciences

description: Additional file 1: Table S1. Comparison of techniques to detect microorganisms that can be employed to diagnose the most common infections affecting critically ill patients. Table containing description of emerging and current techniques to detect microorganism that can be applied to the most common critically ill patients’ infections, including the most important advantages and disadvantages.
Additional file 1 of Facilitators and barriers for lifestyle change in people with prediabetes: a meta-synthesis of qualitative studies
Creators: name: Skoglund, Gyri
name: Nilsson, Birgitta Blakstad
name: Olsen, Cecilie Fromholt
name: Bergland, Astrid
name: Hilde, Gunvor
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Additional file 1. Example of search strategy.
Multicomponent van der Waals equation of state: Applications in nuclear and hadronic physics
Creators: name: Vovchenko, Volodymyr
name: Motornenko, Anton
name: Alba, Paolo
name: Gorenstein, Mark I.
name: Satarov, Leonid M.
name: Stoecker, Horst
Publisher: name: arXiv
Year: 2017
Subjects: subject: Nuclear Theory (nucl-th)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: A generalization of the quantum van der Waals equation of state for a multi-component system in the grand canonical ensemble is proposed. The model includes quantum statistical effects and allows to specify the parameters characterizing repulsive and attractive forces for each pair of particle species. The model can be straightforwardly applied to the description of asymmetric nuclear matter and also for mixtures of interacting nucleons and nuclei. Applications of the model to the equation of state of an interacting hadron resonance gas are discussed.
description: 20 pages, 5 figures, presentation improved, misprints corrected, version accepted for publication in Physical Review C
Additional file 2 of In silico comparative analysis of GGDEF and EAL domain signaling proteins from the Azospirillum genomes
Creators: name: Mata, Alberto
name: Pacheco, César
name: Pérez, José Cruz
name: Sáenz, Martha
name: Baca, Beatriz
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: Table S2. Accession numbers and classifications of GGDEF, EAL and hybrid proteins predicted based on the conservation of signature motifs that were found in all analyzed genomes. Data extracted from http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE=Proteins and http:// and http://smart.embl-heidelberg.de/ following the notation from Römling et al. (2017). (DOCX 109 kb)
Additional file 1 of Shortening of the Burnout Assessment Tool (BAT)—from 23 to 12 items using content and Rasch analysis
Creators: name: Hadžibajramović, Emina
name: Schaufeli, Wilmar
name: De Witte, Hans
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1.
Probing axions with neutron star inspirals and other stellar processes
Creators: name: Hook, Anson
name: Huang, Junwu
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: In certain models of a QCD axion, finite density corrections to the axion potential can result in the axion being sourced by large dense objects. There are a variety of ways to test this phenomenon, but perhaps the most surprising effect is that the axion can mediate forces between neutron stars that can be as strong as gravity. These forces can be attractive or repulsive and their presence can be detected by Advanced LIGO observations of neutron star inspirals. By a numerical coincidence, axion forces between neutron stars with gravitational strength naturally have an associated length scale of tens of kilometers or longer, similar to that of a neutron star. Future observations of neutron star mergers in Advanced LIGO can probe many orders of magnitude of axion parameter space. Because the axion is only sourced by large dense objects, the axion force evades fifth force constraints. We also outline several other ways to probe this phenomenon using electromagnetic signals associated with compact objects.
description: 20 pages, 8 figures
MOESM3 of Normal sleep bouts are not essential for C. elegans survival and FoxO is important for compensatory changes in sleep
Creators: name: Bennett, Heather
name: Khoruzhik, Yulia
name: Hayden, Dustin
name: Huiyan Huang
name: Sanders, Jarred
name: Walsh, Melissa
name: Biron, David
name: Hart, Anne
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Physiology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Computational Biology

description: Additional file 3: Simultaneous loss of daf-16 and aptf-1 does not decrease survival. Survival after L4/A lethargus is reported as percentage of animals failing to shed larval cuticle, undergo vulval eversion, and/or reach adult stage with normal locomotion and response to touch. The number of dead animals (animals not moving or feeding after prodding) was scored at 6 and 24 h after the start of L4/A lethargus. n = 75 animals for all genotypes.
title: 01_2498
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
Additional file 2 of Shortening of the Burnout Assessment Tool (BAT)—from 23 to 12 items using content and Rasch analysis
Creators: name: Hadžibajramović, Emina
name: Schaufeli, Wilmar
name: De Witte, Hans
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 2.
Echoes of War: Childhood Memories from WWII
Creators: name: Project Team, Their Finest Hour
Publisher: name: University of Oxford
Year: 2024
Subjects: classificationCode: 430304
subject: British history
classificationCode: 430308
subject: European history (excl. British, classical Greek and Roman)
classificationCode: 430316
subject: International history

description: The contributor was a child in WWII.The contributor visited a museum in France, which brought back strong memories for her of dark, claustrophobic bomb shelters in London. She was evacuated to Lincoln in 1943. London was in constant darkness, and there was always a feeling of adrenaline and anticipation for the worst. She described the sheer fright of hearing the bombs drop around London. As a little child, she saw the rubble of nearby houses and wondered if she might be next.The contributor's father enlisted in the army but was an engineer, so was not allowed to join. So, he also worked as a fire warden.
Separable equivalence of rings and symmetric algebras
Creators: name: Kadison, Lars
Publisher: name: arXiv
Year: 2017
Subjects: subject: Rings and Algebras (math.RA)
subject: FOS: Mathematics
subject: 16D20, 16D90, 16E10

description: We continue a study of separable equivalence from Hokkaido Mathematical Journal 24 (1995), 527-549. We prove that symmetric separable equivalent rings $A$ and $B$ are linked by a Frobenius bimodule ${}_AP_B$ such that $A$ is $P$-separable over $B$. Separably equivalent rings are linked by a biseparable bimodule $P$. In addition, the ring extension $A \rightarrow$ End $P_B$ is split, separable Frobenius. It is observed that left and right finite projective bimodules over symmetric algebras are Frobenius bimodules; twisted by the Nakayama automorphisms if over Frobenius algebras.
description: 10 pages, an addendum to Hokkaido Mathematical Journal 24 (1995), 527-549, corrections and clearer arguments with thanks to the referee at Bulletin of the London Mathematics Society
A Markov decision process approach to optimizing cancer therapy using multiple modalities
Creators: name: Maass, Kelsey
name: Kim, Minsun
Publisher: name: arXiv
Year: 2017
Subjects: subject: Optimization and Control (math.OC)
subject: Medical Physics (physics.med-ph)
subject: FOS: Mathematics
subject: FOS: Physical sciences

description: There are several different modalities, e.g., surgery, chemotherapy, and radiotherapy, that are currently used to treat cancer. It is common practice to use a combination of these modalities to maximize clinical outcomes, which are often measured by a balance between maximizing tumor damage and minimizing normal tissue side effects due to treatment. However, multi-modality treatment policies are mostly empirical in current practice, and are therefore subject to individual clinicians' experiences and intuition. We present a novel formulation of optimal multi-modality cancer management using a finite-horizon Markov decision process approach. Specifically, at each decision epoch, the clinician chooses an optimal treatment modality based on the patient's observed state, which we define as a combination of tumor progression and normal tissue side effect. Treatment modalities are categorized as (1) Type 1, which has a high risk and high reward, but is restricted in the frequency of administration during a treatment course, (2) Type 2, which has a lower risk and lower reward than Type 1, but may be repeated without restriction, and (3) Type 3, no treatment (surveillance), which has the possibility of reducing normal tissue side effect at the risk of worsening tumor progression. Numerical simulations using various intuitive, concave reward functions show the structural insights of optimal policies and demonstrate the potential applications of using a rigorous approach to optimizing multi-modality cancer management.
description: 15 pages, 11 figures
Additional file 1 of In silico comparative analysis of GGDEF and EAL domain signaling proteins from the Azospirillum genomes
Creators: name: Mata, Alberto
name: Pacheco, César
name: Pérez, José Cruz
name: Sáenz, Martha
name: Baca, Beatriz
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Table S1. Accession numbers of GGDEF, EAL and hybrid proteins encoded by genes conserved in all analyzed Azospirillum genomes. Data extracted from http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE=Proteins . (DOCX 24 kb)
Determination of electric dipole transitions in heavy quarkonia using potential non-relativistic QCD
Creators: name: Segovia, Jorge
name: Steinbeißer, Sebastian
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: High Energy Physics - Lattice (hep-lat)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: The electric dipole transitions $χ_{bJ}(1P)\to γΥ(1S)$ with $J=0,1,2$ and $h_{b}(1P)\to γη_{b}(1S)$ are computed using the weak-coupling version of a low-energy effective field theory named potential non-relativistic QCD (pNRQCD). In order to improve convergence and thus give firm predictions for the studied reactions, the full static potential is incorporated into the leading order Hamiltonian; moreover, we must handle properly renormalon effects and re-summation of large logarithms. The precision we reach is $k_γ^{3}/(mv)^{2} \times \mathcal{O}(v^{2})$, where $k_γ$ is the photon energy, $m$ is the mass of the heavy quark and $v$ its velocity. Our analysis separates those relativistic contributions that account for the electromagnetic interaction terms in the pNRQCD Lagrangian which are $v^{2}$ suppressed and those that account for wave function corrections of relative order $v^{2}$. Among the last ones, corrections from $1/m$ and $1/m^2$ potentials are computed, but not those coming from higher Fock states since they demand non-perturbative input and are $Λ_{\text{QCD}}^{2}/(mv)^{2}$ or $Λ_{\text{QCD}}^{3}/(m^{3}v^{4})$ suppressed, at least, in the strict weak coupling regime. These proceedings are based on the forthcoming publication \cite{steinbeisser}
description: 5 pages; contribution to the proceedings of the FAIRNESS2017: Workshop for young scientists with research interests focused on physics at FAIR. May 28 - June 3, 2017. Sitges, Spain
Controlling the magnetism of oxygen surface vacancies in strontium titanate $\mathrm{(SrTiO_3\!)}$ through charging
Creators: name: Brovko, Oleg O.
name: Tosatti, Erio
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences
subject: J.2

description: We discuss, based on first principles calculations, the possibility to tune the magnetism of oxygen vacancies at the (001) surface of strontium titanate $(\mathrm{SrTiO_3}\!)$. The magnetic moment of single and clustered vacancies stemming from Ti-O broken bonds can be both quenched and stabilized controllably by chemical potential adjustment associated with doping the system with electrons or holes. We discuss to what extent this route to magnetization state control is robust against other external influences like chemical doping, mechanical action and electric field. Such control of vacancy state and magnetization can conceivably be achieved experimentally by using local probe tips.
Additional file 4 of Shortening of the Burnout Assessment Tool (BAT)—from 23 to 12 items using content and Rasch analysis
Creators: name: Hadžibajramović, Emina
name: Schaufeli, Wilmar
name: De Witte, Hans
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 4.
MOESM2 of Normal sleep bouts are not essential for C. elegans survival and FoxO is important for compensatory changes in sleep
Creators: name: Bennett, Heather
name: Khoruzhik, Yulia
name: Hayden, Dustin
name: Huiyan Huang
name: Sanders, Jarred
name: Walsh, Melissa
name: Biron, David
name: Hart, Anne
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Physiology
subject: Pharmacology
subject: Evolutionary Biology
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Computational Biology

description: Additional file 2: daf-16 is not required for hypertonic stress resistance in osm-7; osm-11 animals. Hypertonic stress resistance was examined in young adult animals moved to 500mM NaCl NGM plates for 10 min. osm-7(tm2256) and osm-11(rt142) are complete loss of function alleles for Notch DOS family co-ligands. daf-16(mu86) is a partial loss of function allele. Loss of Notch DOS co-ligands results in resistance to hypertonic stress, based on inability to move, spontaneously or upon prodding, after 10 min on 500mM NaCl NGM plates. Partial loss of daf-16 function does not alter hypertonic resistance in these animals. n = 40 animals for all genotypes.
Stories of a Sea Captain
Creators: name: Project Team, Their Finest Hour
Publisher: name: University of Oxford
Year: 2024
Subjects: classificationCode: 430304
subject: British history
classificationCode: 430308
subject: European history (excl. British, classical Greek and Roman)
classificationCode: 430316
subject: International history

description: - David Hubert Pugh Jones was a sea captain who was awarded an MBE.
- He lost 2 ships but performed exceptionally, being awarded in total:
The Military MBE
1939-1945 Star
The Atlantic Star
Burma Star
- He was the British Endeavour Chief Officer, when he was attacked on the 22nd February 1940
- He was a Welsh speaker, only learning English later in life when taught.
Development of a Community Advisory Board to Guide Research About Cancer Disparities in the Black and African American Community
Creators: name: Carlisle, Veronica
name: Lea, Deirdre
name: Milner, John
name: Getachew, Berhan
name: Coleman, Karia
name: Hirschey, Rachel
name: Bryant, Ashley L.
Publisher: name: Wolters Kluwer
Year: 2022

description:
BACKGROUND: Researchers who aim to serve a community (i.e., racial, gender, ethnic group) of which they are not a part must do foundational work to understand that community and build intentional, thoughtful collaborations with the community to guide their work. OBJECTIVES: This article aims to share a case exemplar of the formation period of a community advisory board (CAB) that conducts research focused on improving health equity in the Black and African American community. METHODS: CAB development has three phases: formation, operation, and maintenance. Previous work has described and provided best practices for each phase. This article focused on the first phase, formation. Guided by critical race theory, with guidance from her mentor, a researcher partnered with a research assistant and a community health educator to develop a CAB. Details of their processes-which apply to the formation of other CABs-are presented. DISCUSSION: During the board formation period, the major focus has been relationship building and developing a shared mission: "To work in partnership with researchers at the University of North Carolina to reduce cancer disparities in Black/African American communities by informing research and program development. As a liaison between the community and researchers, the Community Advisory Board will identify community needs, promote evidence-based interventions and information, raise awareness about health disparities in communities, and educate researchers." CAB formation is nuanced and unique, dependent upon the nature of the research to be conducted and the characteristics of the community and researchers. This case exemplar provides valuable insights to other researchers working to build community partnerships.
Additional file 1 of Antimicrobial activity of ceftazidime-avibactam and comparators against levofloxacin-resistant Escherichia coli collected from four geographic regions, 2012–2018
Creators: name: Stone, Gregory G.
name: Hackel, Meredith A.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 1: Table S1. Activity of ceftazidime-avibactam against levofloxacin-resistant E. coli; ATLAS, by region and year, 2012–2018. Table S2. Activity of colistin against levofloxacin-resistant E. coli, ATLAS, by region and year, 2014*–2018. Table S3. Activity of imipenem against levofloxacin-resistant E. coli isolates, ATLAS, by region and year, 2012–2018. Table S4. Activity of meropenem against levofloxacin-resistant E. coli isolates, ATLAS, by region and year, 2012–2018. Table S5. Activity of tigecycline against levofloxacin-resistant E. coli, ATLAS, by region and year, 2012–2018.
Detecting unresolved binary stars in Euclid VIS images
Creators: name: Kuntzer, T.
name: Courbin, F.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: Measuring a weak gravitational lensing signal to the level required by the next generation of space-based surveys demands exquisite reconstruction of the point-spread function (PSF). However, unresolved binary stars can significantly distort the PSF shape. In an effort to mitigate this bias, we aim at detecting unresolved binaries in realistic Euclid stellar populations. We tested methods in numerical experiments where (i) the PSF shape is known to Euclid requirements across the field of view, and (ii) the PSF shape is unknown. We drew simulated catalogues of PSF shapes for this proof-of-concept paper. Following the Euclid survey plan, the objects were observed four times. We propose three methods to detect unresolved binary stars. The detection is based on the systematic and correlated biases between exposures of the same object. One method is a simple correlation analysis, while the two others use supervised machine-learning algorithms (random forest and artificial neural network). In both experiments, we demonstrate the ability of our methods to detect unresolved binary stars in simulated catalogues. The performance depends on the level of prior knowledge of the PSF shape and the shape measurement errors. Good detection performances are observed in both experiments. Full complexity, in terms of the images and the survey design, is not included, but key aspects of a more mature pipeline are discussed. Finding unresolved binaries in objects used for PSF reconstruction increases the quality of the PSF determination at arbitrary positions. We show, using different approaches, that we are able to detect at least binary stars that are most damaging for the PSF reconstruction process.
description: 10 pages, 9 figures, accepted for publication in A&A
Additional file 10 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
Creators: name: Fu, Ning
name: Ji, Meiyuan
name: Rouard, Mathieu
name: Yan, Hai-Fei
name: Ge, Xue-Jun
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 10: Table S10. Distribution of tandem repeats in Musaceae plastomes.
Additional file 1: of An application of restricted mean survival time in a competing risks setting: comparing time to ART initiation by injection drug use
Creators: name: Calkins, Keri
name: Canan, Chelsea
name: Moore, Richard
name: Lesko, Catherine
name: Lau, Bryan
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Contains the R code used to set up the analysis, as well as an outline of how the various tables in results section were generated. (DOCX 94 kb)
Majorana Doublets, Flat Bands, and Dirac Nodes in s-Wave Superfluids
Creators: name: Hu, Haiping
name: Zhang, Fan
name: Zhang, Chuanwei
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: Topological superfluids protected by mirror and time-reversal symmetries are exotic states of matter possessing Majorana Kramers pairs (MKPs), yet their realizations have long been hindered by the requirement of unconventional pairing. We propose to realize such a topological superfluid by utilizing $s$-wave pairing and emergent mirror and time-reversal symmetries in two coupled 1D ultracold atomic Fermi gases with spin-orbit coupling. By stacking such systems into 2D, we discover topological and Dirac-nodal superfluids hosting distinct MKP flat bands. We show that the emergent symmetries make the MKPs and their flat bands stable against pairing fluctuations that otherwise annihilate paired Majoranas. Exploiting new experimental developments, our scheme provides a unique platform for exploring MKPs and their applications in quantum computation.
description: 14 pages, 11 figures
Additional file 11 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
Creators: name: Fu, Ning
name: Ji, Meiyuan
name: Rouard, Mathieu
name: Yan, Hai-Fei
name: Ge, Xue-Jun
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 11: Table S11. The estimation of substitution rate and dN/dS.
Efficient time stepping for the multiplicative Maxwell fluid including the Mooney-Rivlin hyperelasticity
Creators: name: Shutov, A. V.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Numerical Analysis (math.NA)
subject: FOS: Mathematics

description: A popular version of the finite strain Maxwell fluid is considered, which is based on the multiplicative decomposition of the deformation gradient tensor. The model combines Newtonian viscosity with hyperelasticity of Mooney-Rivlin type; it is a special case of the viscoplasticty model proposed by Simo and Miehe (1992). A simple, efficient and robust implicit time stepping procedure is suggested. Lagrangian and Eulerian versions of the algorithm are available, with equivalent properties. The numerical scheme is iteration free, unconditionally stable and first order accurate. It exactly preserves the inelastic incompressibility, symmetry, positive definiteness of the internal variables, and w-invariance. The accuracy of the stress computations is tested using a series of numerical simulations involving a non-proportional loading and large strain increments. In terms of accuracy, the proposed algorithm is equivalent to the modified Euler backward method with exact inelastic incompressibility; the proposed method is also equivalent to the classical integration method based on exponential mapping. Since the new method is iteration free, it is more robust and computationally efficient. The algorithm is implemented into MSC.MARC and a series of initial boundary value problems is solved in order to demonstrate the usability of the numerical procedures.
description: 28 pages, 5 figures, 6 tables
Additional file 12 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
Creators: name: Fu, Ning
name: Ji, Meiyuan
name: Rouard, Mathieu
name: Yan, Hai-Fei
name: Ge, Xue-Jun
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 12: Table S12. Variability of 23 regions in Musaceae.
Additional file 1 of An interpretable framework for clustering single-cell RNA-Seq datasets
Creators: name: Zhang, Jesse M.
name: Fan, Jue
name: H. Christina Fan
name: Rosenfeld, David
name: Tse, David N.
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Science Policy
subject: Hematology

description: Supplementary figures and separation score analysis. A file containing a distance-metric interpretation of separability score along with the three supplementary figures described in the main text: 1) visual analysis of the Yan et al. dataset, 2) further analysis for the splits generated for the Zheng et al. dataset, 3) analysis on the full Zheng et al. dataset. (PDF 3707 kb)