cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
The de Sitter group and its representations: a window on the notion of de Sitterian elementary systems
Creators: name: Enayati, Mohammad
name: Gazeau, Jean-Pierre
name: Pejhan, Hamed
name: Wang, Anzhong
Publisher: name: arXiv
Year: 2022
Subjects: subject: Mathematical Physics (math-ph)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We review the construction of ("free") elementary systems in de Sitter (dS) spacetime, in the Wigner sense, as associated with unitary irreducible representations (UIR's) of the dS (relativity) group. This study emphasizes the conceptual issues arising in the formulation of such systems and discusses known results in a mathematically rigorous way. Particular attention is paid to: "smooth" transition from classical to quantum theory; physical content under vanishing curvature, from the point of view of a local ("tangent") Minkowskian observer; and thermal interpretation (on the quantum level), in the sense of the Gibbons-Hawking temperature. We review three decompositions of the dS group physically relevant for the description of dS spacetime and classical phase spaces of elementary systems living on it. We review the construction of (projective) dS UIR's issued from these group decompositions. (Projective) Hilbert spaces carrying the UIR's (in some restricted sense) identify quantum ("one-particle") states spaces of dS elementary systems. Adopting a well-established Fock procedure, based on the Wightman-Gärding axioms and on analyticity requirements in the complexified Riemannian manifold, we proceed with a consistent quantum field theory (QFT) formulation of elementary systems in dS spacetime. This dS QFT formulation closely parallels the corresponding Minkowskian one, while the usual spectral condition is replaced by a certain geometric Kubo-Martin-Schwinger (KMS) condition equivalent to a precise thermal manifestation of the associated "vacuum" states.
description: This draft is an early version of both the 1st and subsequent 2nd editions of the book, officially released by Springer Nature in 2022, albeit with a slightly modified title: 'The de Sitter (dS) Group and its Representations: An Introduction to Elementary Systems and Modeling the Dark Energy Universe'. Book DOI: 10.1007/978-3-031-56552-6
ROME III. The Arecibo Search for Star-Planet Interactions at 5 GHz
Creators: name: Route, Matthew
name: Wolszczan, Alex
Publisher: name: arXiv
Year: 2022
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: After nearly three decades of discovery, many exoplanetary systems have been studied and characterized in detail with one important exception: exoplanet magnetism. Although many surveys sought to detect magnetospheric radio emissions from exoplanets to directly measure their magnetic field strengths, they have yet to reveal an unambiguous detection. However, the indirect detection of exoplanet magnetic fields by measuring their influence on their host stars via magnetic star-planet interactions has recently gained prominence as an alternative method of discovery. This third paper of the ROME (Radio Observations of Magnetized Exoplanets) series presents the results of a targeted radio survey of eight nearby exoplanet-hosting systems that may engage in star-planet interactions. This survey, conducted with the Arecibo radio telescope at $\sim$5 GHz, has the greatest frequency coverage of any to date, while providing mJy-level sensitivity over $<$1 s integration times. No exoplanet-induced stellar radio bursts were detected. The orbital phase coverage of candidate systems for magnetic star-planet interactions is described, and the survey results are examined within the context of the plasma flow-obstacle paradigm and searches for star-planet interactions at other wavelengths.
description: 16 pages, 4 tables, 3 figures
The new INB/ELIXIR-ES portfolio of resources
Creators: name: Golobardes, Anna
name: Alloza, Eva
name: INB/ELIXIR-ES Members
name: Valencia, Alfonso
name: Capella-Gutierrez, Salvador
Publisher: name: F1000 Research Limited
Year: 2024

description: The Spanish National Bioinformatics Institute (INB), the Spanish node of ELIXIR, renewed its Service Delivery Plan (SDP) in the second half of 2023. This periodical assessment allows to review the current offer by the node and offer an up-to-date portfolio of resources to ELIXIR, directly impacting the Life Sciences community.

  

The poster shows the selection process for the INB/ELIXIR-ES portfolio renovation. Expressions of Interest in joining the resources portfolio were evaluated by an independent Scientific Advisory Board (SAB) panel. The selection process allowed the inclusion of new resources and the renewal of those already present in the previous SDP, which was approved in 2017. According to the selection criteria, the node identified sustainable and well-established resources that were aligned with ELIXIR and the Open Sciences principles. Beyond the technical excellence, scientific impact and available funding, increasing the gender balance in the node was an important aspect that was taken into account when configuring the current portfolio.

  

Here, we present the result of this process, the renewed INB/ELIXIR-ES SDP composed of 40 resources offered, developed and maintained by 24 groups in 12 institutions across Spain. These ready-to-use resources include 16 tools, nine web services, six databases, four platforms, three workflow managers and orchestrators, and two data collections. Significant resources stand out as cross-node or multi-node services, and some are part of the ELIXIR Key Service Collections as ELIXIR Core Data Resources and ELIXIR Recommended Interoperability Resources. Interestingly, this is the first time that data collections, e.g. Collaborative Spanish Variant Server (CSVS) and Genomes for Life - Cohort Study of the Genomes of Catalonia (GCAT), have been included as part of the INB/ELIXIR-ES portfolio highlighting the value and possibilities of such resources for the whole research community.

INB/ELIXIR-ES: https://inb-elixir.es
Cumulative Merging Percolation: A long-range percolation process in networks
Creators: name: Cirigliano, Lorenzo
name: Cimini, Giulio
name: Pastor-Satorras, Romualdo
name: Castellano, Claudio
Publisher: name: arXiv
Year: 2022
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Social and Information Networks (cs.SI)
subject: Physics and Society (physics.soc-ph)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: Percolation on networks is a common framework to model a wide range of processes, from cascading failures to epidemic spreading. Standard percolation assumes short-range interactions, implying that nodes can merge into clusters only if they are nearest-neighbors. Cumulative Merging Percolation (CMP) is an new percolation process that assumes long-range interactions, such that nodes can merge into clusters even if they are topologically distant. Hence in CMP percolation clusters do not coincide with the topological connected components of the network. Previous work has shown that a specific formulation of CMP features peculiar mechanisms for the formation of the giant cluster, and allows to model different network dynamics such as recurrent epidemic processes. Here we develop a more general formulation of CMP in terms of the functional form of the cluster interaction range, showing an even richer phase transition scenario with competition of different mechanisms resulting in crossover phenomena. Our analytic predictions are confirmed by numerical simulations.
description: 12 pages, 6 figures
Strong Determinism
Creators: name: Chen, Eddy Keming
Publisher: name: arXiv
Year: 2022
Subjects: subject: Quantum Physics (quant-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: History and Philosophy of Physics (physics.hist-ph)
subject: FOS: Physical sciences

description: A strongly deterministic theory of physics is one that permits exactly one possible history of the universe. In the words of Penrose (1989), ''it is not just a matter of the future being determined by the past; the entire history of the universe is fixed, according to some precise mathematical scheme, for all time.'' Such an extraordinary feature may appear unattainable in a world like ours. In this paper, I show that it can be achieved in a simple way and discuss its implications for metaphysics and philosophy of science, including natural properties, free will, explanation, and modality. First, I propose a precise definition of strong determinism. Next, I discuss its philosophical ramifications and a toy example. Finally, I provide a realistic example of a strongly deterministic (and simple) physical theory -- the Everettian Wentaculus. A surprising consequence is that whether or not our world is strongly deterministic may be empirically underdetermined.
description: Accepted version, Philosophers' Imprint
Prediction of COVID-19 deterioration in high-risk patients at diagnosis: an early warning score for advanced COVID-19 developed by machine learning
Creators: name: Jakob, Carolin E. M.
name: Mahajan, Ujjwal Mukund
name: Oswald, Marcus
name: Stecher, Melanie
name: Schons, Maximilian
name: Mayerle, Julia
name: Rieg, Siegbert
name: Pletz, Mathias
name: Merle, Uta
name: Wille, Kai
name: Borgmann, Stefan
name: Spinner, Christoph D.
name: Dolff, Sebastian
name: Scherer, Clemens
name: Pilgram, Lisa
name: Rüthrich, Maria
name: Hanses, Frank
name: Hower, Martin
name: Strauß, Richard
name: Massberg, Steffen
name: Er, Ahmet Görkem
name: Jung, Norma
name: Vehreschild, Jörg Janne
name: Stubbe, Hans
name: Tometten, Lukas
name: König, Rainer
Publisher: name: Universität Regensburg
Year: 2021
Subjects: subject: COVID-19; Machine learning; Predictive model; Advanced stage; Complicated stage; LEOSS
subject: 610 Medizin

description: Purpose
While more advanced COVID-19 necessitates medical interventions and hospitalization, patients with mild COVID-19 do not require this. Identifying patients at risk of progressing to advanced COVID-19 might guide treatment decisions, particularly for better prioritizing patients in need for hospitalization.

Methods
We developed a machine learning-based predictor for deriving a clinical score identifying patients with asymptomatic/mild COVID-19 at risk of progressing to advanced COVID-19. Clinical data from SARS-CoV-2 positive patients from the multicenter Lean European Open Survey on SARS-CoV-2 Infected Patients (LEOSS) were used for discovery (2020-03-16 to 2020-07-14) and validation (data from 2020-07-15 to 2021-02-16).

Results
The LEOSS dataset contains 473 baseline patient parameters measured at the first patient contact. After training the predictor model on a training dataset comprising 1233 patients, 20 of the 473 parameters were selected for the predictor model. From the predictor model, we delineated a composite predictive score (SACOV-19, Score for the prediction of an Advanced stage of COVID-19) with eleven variables. In the validation cohort (n = 2264 patients), we observed good prediction performance with an area under the curve (AUC) of 0.73 ± 0.01. Besides temperature, age, body mass index and smoking habit, variables indicating pulmonary involvement (respiration rate, oxygen saturation, dyspnea), inflammation (CRP, LDH, lymphocyte counts), and acute kidney injury at diagnosis were identified. For better interpretability, the predictor was translated into a web interface.

Conclusion
We present a machine learning-based predictor model and a clinical score for identifying patients at risk of developing advanced COVID-19.
Discovery and prioritization of variants and genes for kidney function in >1.2 million individuals
Creators: name: Stanzick, Kira J.
name: Li, Yong
name: Schlosser, Pascal
name: Gorski, Mathias
name: Wuttke, Matthias
name: Thomas, Laurent F.
name: Rasheed, Humaira
name: Rowan, Bryce X.
name: Graham, Sarah E.
name: Vanderweff, Brett R.
name: Patil, Snehal B.
name: Robinson-Cohen, Cassianne
name: Gaziano, John M.
name: O’Donnell, Christopher J.
name: Willer, Cristen J.
name: Hallan, Stein
name: Åsvold, Bjørn Olav
name: Gessner, Andre
name: Hung, Adriana M.
name: Pattaro, Cristian
name: Köttgen, Anna
name: Stark, Klaus J.
name: Heid, Iris M.
name: Winkler, Thomas W.
Publisher: name: Universität Regensburg
Year: 2021
Subjects: subject: GLOMERULAR-FILTRATION-RATE; SERUM CYSTATIN-C; FALSE DISCOVERY; ESTIMATING GFR; RARE VARIANTS; ASSOCIATION; CREATININE; STATISTICS; MASS;
subject: 610 Medizin

description: Genes underneath signals from genome-wide association studies (GWAS) for kidney function are promising targets for functional studies, but prioritizing variants and genes is challenging. By GWAS meta-analysis for creatinine-based estimated glomerular filtration rate (eGFR) from the Chronic Kidney Disease Genetics Consortium and UK Biobank (n=1,201,909), we expand the number of eGFRcrea loci (424 loci, 201 novel; 9.8% eGFRcrea variance explained by 634 independent signal variants). Our increased sample size in fine-mapping (n=1,004,040, European) more than doubles the number of signals with resolved fine-mapping (99% credible sets down to 1 variant for 44 signals, <= 5 variants for 138 signals). Cystatin-based eGFR and/or blood urea nitrogen association support 348 loci (n=460,826 and 852,678, respectively). Our customizable tool for Gene PrioritiSation reveals 23 compelling genes including mechanistic insights and enables navigation through genes and variants likely relevant for kidney function in human to help select targets for experimental follow-up. Identifying causal variants and genes in genome-wide association studies remains a challenge, an issue that is ameliorated with larger sample sizes. Here the authors meta-analyze kidney function genome-wide association studies to identify new loci and fine-map loci to home in on variants and genes involved in kidney function.
A mixed-norm estimate of the two-particle reduced density matrix of many-body Schrödinger dynamics for deriving the Vlasov equation
Creators: name: Chen, Li
name: Lee, Jinyeop
name: Li, Yue
name: Liew, Matthew
Publisher: name: arXiv
Year: 2022
Subjects: subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: We re-examine the combined semi-classical and mean-field limit in the $N$-body fermionic Schrödinger equation with pure state initial data using the Husimi measure framework. The Husimi measure equation involves three residue types: kinetic, semiclassical, and mean-field. The main result of this paper is to provide better estimates for the kinetic and mean-field residue than those in \cite{Chen2021JSP}. Especially, the estimate for the mean-field residue is shown to be smaller than the semiclassical residue by a mixed-norm estimate of the two-particle reduced density matrix factorization. Our analysis also updates the oscillation estimate parts in the residual term estimates appeared in \cite{Chen2021JSP}.
Tight Differential Privacy Guarantees for the Shuffle Model with $k$-Randomized Response
Creators: name: Biswas, Sayan
name: Jung, Kangsoo
name: Palamidessi, Catuscia
Publisher: name: arXiv
Year: 2022
Subjects: subject: Cryptography and Security (cs.CR)
subject: FOS: Computer and information sciences

description: Most differentially private (DP) algorithms assume a central model in which a reliable third party inserts noise to queries made on datasets, or a local model where the users locally perturb their data. However, the central model is vulnerable via a single point of failure, and in the local model, the utility of the data deteriorates significantly. The recently proposed shuffle model is an intermediate framework between the central and the local paradigms where the users send their locally privatized data to a server where messages are shuffled, effacing the link between a privatized message and the corresponding user, giving a better trade-off between privacy and utility than the local model, as its privacy gets amplified without adding more noise. In this paper, we theoretically derive the strictest known bound for DP guarantee for the shuffle models with $k$-Randomized Response local randomizers. There on, we focus on the utility of the shuffle model for histogram queries. Leveraging on the matrix inversion method, which is used to approximate the original distribution from the empirical one produced by the $k$-RR mechanism, we de-noise the histogram produced by the shuffle model to evaluate the total variation distance of the resulting histogram from the true one, which we regard as the measure of utility of the privacy mechanism. We perform experiments on both synthetic and real data to compare the privacy-utility trade-off of the shuffle model with that of the central one privatized by adding the state-of-the-art Gaussian noise to each bin. Although the experimental results stay consistent with the literature that favour the central model, we see that, the difference in statistical utilities between the central and the shuffle models is very small, showing that they are almost comparable under the same level of DP.
Amphibolocypris Rome 1965
Creators: name: Jocque, Merlijn
name: Brendonck, Luc
name: Riddoch, Bruce J
name: Martens, Koen
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Ostracoda
Podocopida
Cyprididae
Amphibolocypris

description: Amphibolocypris Rome, 1965
Type species: Amphibolocypris exigua Rome, 1965 (by original designation)
Origin of name: ‘Amphibolos’, from the Greek 'Amphibolein' = ambiguous, as this genus shares characters of both Isocypris and Platycypris, together with 'Cypris'.
Diagnosis (amended from Rome 1965): Carapace elongated, narrow in dorsal view. Third endite of Mx1 with 2 large, smooth Zahnborsten. T2 (walking limb) with dorsal seta on 4th segment long and claw-like. CR without proximal seta.
description: Published as part of Jocque, Merlijn, Brendonck, Luc, Riddoch, Bruce J & Martens, Koen, 2010, On Amphibolocypris arida sp. nov. (Crustacea, Ostracoda), from rock pools in Botswana (southern Africa), pp. 47-58 in Zootaxa 2408 on page 49, DOI: 10.5281/zenodo.194264
Principal and complementary series representations at the late-time boundary of de Sitter
Creators: name: Sengor, Gizem
name: Skordis, Constantinos
Publisher: name: arXiv
Year: 2022
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: We demonstrate how free massive scalar fields in the set up that usually appears in early universe inflationary studies, correspond to the principal series and complementary series representations of the group SO(d+1,1) by introducing late-time operators and computing their two-point functions.
description: Prepared as part of the proceedings of the 14th International Workshop on Lie Theory and Its Applications in Physics
INCREASING THE ECONOMIC EFFICIENCY OF TOURIST AGGLOMERATIONS
Creators: name: Toshev, Nurbek
Publisher: name: Zenodo
Year: 2024

description: This article examines the issues of increasing the economic efficiency of tourist agglomerations. The main directions of strengthening the economic potential of the tourism sector by effective management of tourist agglomerations, infrastructure development, implementation of innovative approaches and expansion of interregional cooperation are analyzed. Factors hindering the development of touristic agglomerations were identified in the study, and practical recommendations for their elimination were developed.
Additional file 2: of Time-resolved amino acid uptake of Clostridium difficile 630Î erm and concomitant fermentation product and toxin formation
Creators: name: Neumann-Schaal, Meina
name: Hofmann, Julia
name: Will, Sabine
name: Schomburg, Dietmar
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Substrate consumption and product formation in MDM. Plotted were relative abundances based on peak areas (except glucose, formate and ammonium) were obtained by GC-MS or concentrations obtained by enzymatic assays (glucose, formate and ammonium) and fitted using OriginPro 9.0G software. (PDF 371Â kb)
Additional file 1: of Post-mortem histopathology underlying Î˛-amyloid PET imaging following flutemetamol F 18 injection
Creators: name: Milos Ikonomovic
name: Buckley, Chris
name: Heurling, Kerstin
name: Sherwin, Paul
name: Jones, Paul
name: Zanette, Michelle
name: Mathis, Chester
name: Klunk, William
name: Chakrabarty, Aruna
name: Ironside, James
name: Ismail, Azzam
name: Smith, Colin
name: Thal, Dietmar
name: Beach, Thomas
name: Farrar, Gill
name: Smith, Adrian
Publisher: name: Figshare
Year: 2016
Subjects: subject: Cell Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Science Policy
subject: Computational Biology

description: Example of the recording of pathology sampling to enable mapped cortical tracer retention SUVRs to be measured for correlation. Regions sampled from the lateral surface include the Midfrontal lobe (MFL), Superior Temporal Gyrus (STG), Middle Temporal Gyrus (MTG) and Inferior Parietal Lobe. Regions sampled from the medial surface include Anterior Cingulate Gyrus (ACG), Posterior Cingulate Gyrus (PCG), Precuneus (PRC) and Primary Visual Cortex (PVC). (DOC 90 kb)
Additional file 1: of Metagenomic and metatranscriptomic inventories of the lower Amazon River, May 2011
Creators: name: Satinsky, Brandon
name: Fortunato, Caroline
name: Doherty, Mary
name: Smith, Christa
name: Shalabh Sharma
name: Ward, Nicholas
name: Krusche, Alex
name: Yager, Patricia
name: Richey, Jeffrey
name: Moran, Mary
name: Crump, Byron
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Detailed methods. Description of metagenome and metatranscriptome sample processing, sequencing, and data analysis, including internal standard additions and analyses. Figure S1. Hierarchical clustering of the Bray-Curtis dissimilarities in the taxonomic binning of transcripts from two microbial size fractions from 50Â % water depth at each of five locations in the Amazon River and from the surface water at the TapajĂłs station.
Additional file 3: of Time-resolved amino acid uptake of Clostridium difficile 630Î erm and concomitant fermentation product and toxin formation
Creators: name: Neumann-Schaal, Meina
name: Hofmann, Julia
name: Will, Sabine
name: Schomburg, Dietmar
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Product formation in CDMM. Plotted were relative abundances based on peak areas (except formate and ammonium) were obtained by GC-MS or concentrations obtained by enzymatic assays (formate and ammonium) and fitted using OriginPro 9.0G software. (PDF 397Â kb)
Steroid-refractory chronic graft-versus-host disease: treatment options and patient management
Creators: name: Wolff, Daniel
name: Fatobene, Giancarlo
name: Rocha, Vanderson
name: Kröger, Nicolaus
name: Flowers, Mary E.
Publisher: name: Universität Regensburg
Year: 2021
Subjects: subject: STEM-CELL TRANSPLANTATION; CONSENSUS DEVELOPMENT PROJECT; BRONCHIOLITIS OBLITERANS SYNDROME; LOW-DOSE METHOTREXATE; TERM-FOLLOW-UP; BONE-MARROW; EXTRACORPOREAL PHOTOPHERESIS; CLINICAL-TRIALS; CHRONIC GVHD; PHASE-II
subject: 610 Medizin

description: Chronic graft-versus-host disease (cGVHD) is one of the major causes of late mortality after allogenic hematopoietic stem cell transplantation. Moderate-to-severe cGVHD is associated with poor health-related quality of life and substantial disease burden. While corticosteroids with or without calcineurin inhibitors comprise the first-line treatment option, the prognosis for patients with steroid-refractory cGVHD (SR-cGVHD) remains poor. The mechanisms underlying steroid resistance are unclear, and there are no standard second-line treatment guidelines for patients with SR-cGVHD. In this review, we provide an overview on current treatment options of cGVHD and use a series of theoretical case studies to elucidate the rationale of choices of second- and third-line treatment options for patients with SR-cGVHD based on individual patient profiles.
Additional file 1: of Capturing patients’ needs in casemix: a systematic literature review on the value of adding functioning information in reimbursement systems
Creators: name: Hopfe, Maren
name: Stucki, Gerold
name: Ric Marshall
name: Twomey, Conal
name: T. Bedirhan Üstün
name: Prodinger, Birgit
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Science Policy

description: The PRISMA checklist. (PDF 58 kb)
Additional file 1: of Time-resolved amino acid uptake of Clostridium difficile 630Î erm and concomitant fermentation product and toxin formation
Creators: name: Neumann-Schaal, Meina
name: Hofmann, Julia
name: Will, Sabine
name: Schomburg, Dietmar
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Substrate consumption in CDMM. Plotted were relative abundances based on peak areas (except glucose) were obtained by GC-MS or concentrations obtained by enzymatic assays (glucose) and fitted using OriginPro 9.0G software. (PDF 321Â kb)
Additional file 3: of Capturing patients’ needs in casemix: a systematic literature review on the value of adding functioning information in reimbursement systems
Creators: name: Hopfe, Maren
name: Stucki, Gerold
name: Ric Marshall
name: Twomey, Conal
name: T. Bedirhan Üstün
name: Prodinger, Birgit
Publisher: name: Figshare
Year: 2016
Subjects: Space Science
Medicine
Science Policy

description: STROBE. (PDF 28 kb)
Additional file 1: Table S1. of Subjective burden among spousal and adult-child informal caregivers of older adults: results from a longitudinal cohort study
Creators: name: Oldenkamp, Marloes
name: Hagedoorn, Mariët
name: Slaets, Joris
name: Stolk, Ronald
name: Wittek, Rafael
name: Smidt, Nynke
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: Comparison caregivers dropout after baseline and caregivers with scores at both time periods. Table S2. Baseline univariate and multivariate logistic regression analyses, spousal caregivers (N = 154). Table S3. Baseline univariate and multivariate logistic regression analyses, adult-child caregivers (N = 202). (DOCX 52 kb)
Additional file 1: of Oligodendrocyte development in the embryonic tuberal hypothalamus and the influence of Ascl1
Creators: name: Marsters, Candace
name: Rosin, Jessica
name: Thornton, Hayley
name: Aslanpour, Shaghayegh
name: Klenin, Natasha
name: Grey Wilkinson
name: Schuurmans, Carol
name: Pittman, Quentin
name: Kurrasch, Deborah
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Ecology
subject: Developmental Biology
subject: Marine Biology

description: Figure S1: Examples of coronal expression pattern of SF-1, a neuronal VMH marker, used to indicate the rostral-caudal borders of the tuberal hypothalamus at E11.5, E13.5, E15.5, E17.5 and P0. VMH is outlined with dotted white lines. Figure S2: E11.5 tuberal hypothalamus immunolabeled with (A) Olig2/Sox9 and (B) Olig2/PdgfrÎą 3rd ventricle (3 V) is outlined with dotted white lines. VZ indicates the ventricular zone and MZ indicates the mantle zone. Figure S3: Ascl1 expression location in the Ascl1 GFPKI/+ mouse in the ventral to mid 3 V in the tuberal hypothalamus at E12.5 and E14.5. Top panels present mouse in the ventral to mid 3 V in the tuberal hypothalamus at E12.5 and E14.5. Top panels present in situ hybridization showing Ascl1 mRNA expression and bottom panels present corresponding GFP tracing. (PDF 13568Â kb)
Additional file 2: of Fuzzy-FishNET: a highly reproducible protein complex-based approach for feature selection in comparative proteomics
Creators: name: Goh, Wilson
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics

description: Recall distributions for several network-based methods for three simulated datasets (D1.2, D2.2 and RC1) at three levels of purity (50, 75 and 100%). (PDF 97 kb)
Additional file 2: of Capturing patients’ needs in casemix: a systematic literature review on the value of adding functioning information in reimbursement systems
Creators: name: Hopfe, Maren
name: Stucki, Gerold
name: Ric Marshall
name: Twomey, Conal
name: T. Bedirhan Üstün
name: Prodinger, Birgit
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: The search strategies. (PDF 21 kb)
Additional file 3: Table S3. of Correlation between mutations and mRNA expression of APC and MUTYH genes: new insight into hereditary colorectal polyposis predisposition
Creators: name: Aceto, Gitana
name: Fantini, Fabiana
name: Iure, Sabrina De
name: Nicola, Marta Di
name: Palka, Giandomenico
name: Valanzano, Rosa
name: Gregorio, Patrizia Di
name: Stigliano, Vittoria
name: Genuardi, Maurizio
name: Battista, Pasquale
name: Cama, Alessandro
name: Curia, Maria
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Distribution of cases and controls at 1 SD from the overall mean ASE after combining both MUTYH assays. (DOCX 41 kb)
Additional file 4: of Time-resolved amino acid uptake of Clostridium difficile 630Î erm and concomitant fermentation product and toxin formation
Creators: name: Neumann-Schaal, Meina
name: Hofmann, Julia
name: Will, Sabine
name: Schomburg, Dietmar
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Inorganic Chemistry
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Casein composition and deduced amino acid composition of casamino acids. Data were confirmed by enzymatic measurements of alanine, glutamate and free amino acid contents. (PDF 34Â kb)
Additional file 3: of Fuzzy-FishNET: a highly reproducible protein complex-based approach for feature selection in comparative proteomics
Creators: name: Goh, Wilson
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Top 25 Fuzzy-FishNET complexes. (PDF 141 kb)
Factors influencing the nutritional behavior of Syrian migrants in Germany — results of a qualitative study
Creators: name: Sauter, Alexandra
name: Kikhia, Salma
name: von Sommoggy, Julia
name: Loss, Julika
Publisher: name: Universität Regensburg
Year: 2021
Subjects: subject: Syria, Immigrants, Nutrition transition, Germany, Health promotion, Qualitative research, Migration, Diet
subject: 610 Medizin

description: Background
Syrian migrants represent the third-largest group of foreigners in Germany and are therefore potential users of health promotion initiatives, including nutrition programs. It is little known how (healthy) nutrition is understood and implemented by this group and which factors influence their experiences related to food and eating in the host country. Thus, this study aimed to explore the importance of (healthy) nutrition, facilitators, and barriers of a preferred diet; nutritional changes in relation to the country of origin; and how nutrition may change with increasing length of stay.

Methods
Thirty semi-structured qualitative interviews with Syrian migrants (male = 16, female = 14, 18–35 years, length of stay 10–68 months) were conducted in 2018. Seventeen migrants could be followed-up after 12 months and were interviewed in 2019 again and were asked for changes in their nutritional behavior. Interviews were conducted in German, English, or Arabic, transcribed and translated into English if necessary. For analysis, an abbreviated version of the Grounded Theory was used.

Results
We identified six overarching themes that described influencing factors on a favored diet in Germany over the course of stay: (1) managing everyday life; (2) intercultural contact with local residents; (3) social context of cooking and eating; (4) ambiguity toward Arabic food; (5) mistrust toward certain types of food; and (6) influence of postmigration stressors. In general, the importance of nutrition is high among Syrian migrants. However, daily stressors, the lack of practical knowledge of how to cook favored dishes, and food insecurity in the new food environment make it difficult to obtain a preferred diet. With increasing stay, many developed a higher awareness of healthy eating, mainly due to a new independence or influences from the social environment in Germany.

Conclusion
Results highlight the need for health promotion interventions to be more responsive to the specific needs of Syrian migrants, including nutrition. Syrian migrants differ in their capabilities, needs, and aims, and they should be addressed differently by health professionals, social services or migrant specific services. Future research should continue to focus on the living conditions of Syrian migrants and its influence on nutrition.
Quantum Internet: from Medium Access Control to Entanglement Access Control
Creators: name: Illiano, Jessica
name: Viscardi, Michele
name: Koudia, Seid
name: Caleffi, Marcello
name: Cacciapuoti, Angela Sara
Publisher: name: arXiv
Year: 2022
Subjects: subject: Quantum Physics (quant-ph)
subject: Networking and Internet Architecture (cs.NI)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: Multipartite entanglement plays a crucial role for the design of the Quantum Internet, due to its potentiality of significantly increasing the network performance. In this paper, we design an entanglement access control protocol for multipartite state, which exhibits several attractive features. Specifically, the designed protocol is able to jointly extract in a distributed way an EPR pair from the original multipartite entangled state shared by the set of network nodes, and to univocally determines the identities of the transmitter node and the receiver node in charge of using the extracted EPR pair. Furthermore, the protocol avoids to delegate the signaling arising with entanglement access control to the classical network, with the exception of the unavoidable classical communications needed for EPR extraction and qubit teleportation. Finally, the protocol supports the anonymity of the entanglement accessing nodes.
On the monomial algebra associated to the monomial characters of a finite group
Creators: name: Cimpoeas, Mircea
name: Radu, Alexandru F.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Representation Theory (math.RT)
subject: Commutative Algebra (math.AC)
subject: Number Theory (math.NT)
subject: FOS: Mathematics
subject: 11R42, 20C15

description: Given a finite group $G$, we study the monomial algebra $R_G$, generated by the monomial characters of $G$. In particular, we note that the integral closure of $R_G$ is contained in the algebra generated by those characters $χ$ for which their associated Artin L-function $L(s,χ)$ is holomorphic at $s_0\in\mathbb C\setminus\{1\}$. Also, we discuss the supercharacter theoretic case.
description: 12 pages. arXiv admin note: text overlap with arXiv:2106.10953
Amphibolocypris
Creators: name: Jocque, Merlijn
name: Brendonck, Luc
name: Riddoch, Bruce J
name: Martens, Koen
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Ostracoda
Podocopida
Cyprididae
Amphibolocypris

description: Amphibolocypris sp. A. sp.nov.
(Fig. 6 C)
Locality: Depression in granite in northern Namib desert, South of Hoanib River, Namibia. Coordinates: 19°31’S 13°05’E. Collected by J.A. Day on 24.12.1979 and 11.1.1980. Accompanying ostracod fauna: Plesiocypridopsis spec., Sarscypridopsis cf pygmaea.
Material: 1 male, with valves lost and soft parts dissected in glycerine in a sealed slide. Fig. 6 C shows the outline of the hemipenis of this specimen.
description: Published as part of Jocque, Merlijn, Brendonck, Luc, Riddoch, Bruce J & Martens, Koen, 2010, On Amphibolocypris arida sp. nov. (Crustacea, Ostracoda), from rock pools in Botswana (southern Africa), pp. 47-58 in Zootaxa 2408 on page 56, DOI: 10.5281/zenodo.194264
[Cher Monsieur, Nous tenons à vous remercier vivement d’avoir accepté]
Creators: name: Christian, Auboyneau
name: Auboyneau, Christian
name: Huybrechts, Jacques
name: Kern, Sylvain
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2024
Subjects: Remerciements
Cité de la réussite

description: Destinataire : Manet, Eduardo
description: Remerciements pour avoir accepter de participer à ''La Cité de la Réussite'', dans le cadre des Rencontres de la Sorbonne, qui aura lieu les 21 et 22 octobre 2000.
description: Agradecimiento por participar a ''La Cité de la Réussite'', en el marco de los Encuentros de la Sorbonne, que tendrá lugar el 21 y 22 de octubre de 2000.
description: Notes : Papier à en-tête : Les Rencontres de la Sorbonne – Cité de la Réussite.
description: Source: EM-B-2000-04-17
description: Source: Localisation de la ressource : Centre de Recherches Latino-Américaines (CRLA–Archivos, ITEM UMR8132). MSHS - Bât. A5, 1er étage 5 rue Théodore Lefebvre - TSA21103. 86073 Poitiers cedex 9.
Amphibolocypris
Creators: name: Jocque, Merlijn
name: Brendonck, Luc
name: Riddoch, Bruce J
name: Martens, Koen
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Ostracoda
Podocopida
Cyprididae
Amphibolocypris

description: Amphibolocypris sp. B. sp.nov.
(Fig. 6 D)
Locality: Shallow granite rainpool, near Etjokule, Waterberg plateau, Namibia. Coordinate: 20° 22’S, 17° 22’E (SE2017Ad). Collected by B. Curtis on 19.02.1983.
Material: 1 male, with valves lost and soft parts dissected in glycerine in a sealed slide. Fig. 6 D shows the outline of the hemipenis of this specimen.
description: Published as part of Jocque, Merlijn, Brendonck, Luc, Riddoch, Bruce J & Martens, Koen, 2010, On Amphibolocypris arida sp. nov. (Crustacea, Ostracoda), from rock pools in Botswana (southern Africa), pp. 47-58 in Zootaxa 2408 on page 56, DOI: 10.5281/zenodo.194264
Caiguiriinae
Creators: name: Dronen, Norman O.
name: Blend, Charles K.
name: Davis, Alisha J.
Publisher: name: Zenodo
Year: 2004
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Plagiorchiida
Heterophyidae

description: Subfamily Caiguiriinae Nasir and Díaz, 1971
Emended Diagnosis: The original description of the subfamily by Nasir and Díaz (1971) should be emended to include an unarmed oral sucker.
description: Published as part of Dronen, Norman O., Blend, Charles K. & Davis, Alisha J., 2004, Emendation of the subfamilies Caiguiriinae and Pygidiopsinae (Digenea) with a redescription of Caiguiria anterouteria (Digenea: Heterophyidae) and reassignment of Pygydiopsis crassus to Caiguiria, pp. 1-12 in Zootaxa 417 on page 6, DOI: 10.5281/zenodo.158825
Caiguiria Nasir and Diaz 1971
Creators: name: Dronen, Norman O.
name: Blend, Charles K.
name: Davis, Alisha J.
Publisher: name: Zenodo
Year: 2004
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Plagiorchiida
Heterophyidae
Caiguiria

description: Genus Caiguiria Nasir and Díaz, 1971
Emended Diagnosis: The original description of the genus by Nasir and Díaz (1971) should be emended to include that the vitelline follicles reach the level of the acetabulum anteriorly not extensively surpassing the testes posteriorly in to the posttesticular space.
description: Published as part of Dronen, Norman O., Blend, Charles K. & Davis, Alisha J., 2004, Emendation of the subfamilies Caiguiriinae and Pygidiopsinae (Digenea) with a redescription of Caiguiria anterouteria (Digenea: Heterophyidae) and reassignment of Pygydiopsis crassus to Caiguiria, pp. 1-12 in Zootaxa 417 on page 6, DOI: 10.5281/zenodo.158825
Additional file 1: Table S1. of Retinoid and carotenoid status in serum and liver among patients at high-risk for liver cancer
Creators: name: Yachana Kataria
name: Deaton, Ryan
name: Enk, Erika
name: Jin, Ming
name: Milita Petrauskaite
name: Linlin Dong
name: Goldenberg, Joseph
name: Cotler, Scott
name: Jensen, Donald
name: Breemen, Richard Van
name: Gann, Peter
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 60506 Virology

description: Clinical assay results for the study population by fibrosis stage - median (interquartile range). (DOCX 38 kb)
Pygidiopsinae Yamaguti 1958
Creators: name: Dronen, Norman O.
name: Blend, Charles K.
name: Davis, Alisha J.
Publisher: name: Zenodo
Year: 2004
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Plagiorchiida
Heterophyidae

description: Subfamily Pygidiopsinae Yamaguti, 1958
Emended Diagnosis: The original description of the subfamily Pygidiopsinae by Yamaguti (1958) should be emended to include vitelline follicles invading posttesticular space posteriorly, not reaching acetabular level anteriorly; uterus confined to hindbody.
description: Published as part of Dronen, Norman O., Blend, Charles K. & Davis, Alisha J., 2004, Emendation of the subfamilies Caiguiriinae and Pygidiopsinae (Digenea) with a redescription of Caiguiria anterouteria (Digenea: Heterophyidae) and reassignment of Pygydiopsis crassus to Caiguiria, pp. 1-12 in Zootaxa 417 on page 9, DOI: 10.5281/zenodo.158825
Sampling Frequency Thresholds for Quantum Advantage of Quantum Approximate Optimization Algorithm
Creators: name: Lykov, Danylo
name: Wurtz, Jonathan
name: Poole, Cody
name: Saffman, Mark
name: Noel, Tom
name: Alexeev, Yuri
Publisher: name: arXiv
Year: 2022
Subjects: subject: Quantum Physics (quant-ph)
subject: Computational Complexity (cs.CC)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: In this work, we compare the performance of the Quantum Approximate Optimization Algorithm (QAOA) with state-of-the-art classical solvers such as Gurobi and MQLib to solve the combinatorial optimization problem MaxCut on 3-regular graphs. The goal is to identify under which conditions QAOA can achieve "quantum advantage" over classical algorithms, in terms of both solution quality and time to solution. One might be able to achieve quantum advantage on hundreds of qubits and moderate depth $p$ by sampling the QAOA state at a frequency of order 10 kHz. We observe, however, that classical heuristic solvers are capable of producing high-quality approximate solutions in linear time complexity. In order to match this quality for $\textit{large}$ graph sizes $N$, a quantum device must support depth $p>11$. Otherwise, we demonstrate that the number of required samples grows exponentially with $N$, hindering the scalability of QAOA with $p\leq11$. These results put challenging bounds on achieving quantum advantage for QAOA MaxCut on 3-regular graphs. Other problems, such as different graphs, weighted MaxCut, maximum independent set, and 3-SAT, may be better suited for achieving quantum advantage on near-term quantum devices.
MOESM1 of The effect of protein acetylation on the formation and processing of inclusion bodies and endogenous protein aggregates in Escherichia coli cells
Creators: name: Kuczyńska-Wiśnik, Dorota
name: Moruno-Algara, María
name: Stojowska-Swędrzyńska, Karolina
name: Laskowska, Ewa
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Figure S1. Hot-spot area plot predicted by Aggrescan software [27] for VP1GFP. New aggregation hot-spot areas were created in VP1GFP variants in which lysine residues were replaced by hydrophobic aminoacids (F, I or V) to mimic lysine acetylation.