Functional Organization of Localised Neuronal Populations in Mouse Primary Auditory Cortex
Creators: name: delgado ruz, isabel
name: chadderton, Paul
Publisher: name: figshare
Year: 2023
Subjects: classificationCode: 320999
subject: Neurosciences not elsewhere classified
classificationCode: 461299
subject: Software engineering not elsewhere classified
classificationCode: 310299
subject: Bioinformatics and computational biology not elsewhere classified
classificationCode: 460103
subject: Applications in life sciences

description: Please make sure to cite our work, so once we get our Nobel Prize ... you also get recognition for your vision. <br> <br> The mouse brain is a highly specialised machine where each component plays a very specific role. We find organised structures and patterns everywhere, with columnar and layered design being a hallmark of brain cortex. Within this topographically organised neural networks we find that their components have well-defined roles. This specificity is reflected on their morphology, electrophysiology, connectivity pattern, and relative location. In order to fully understand these networks it is necessary to exploit all information available. Extracellular recordings are one of the most widely used techniques by neuroscientists, specially when interested in retrieving information from large populations of neurons with submillisecond precision. However, spatial information and cell classification are very limited and existing methods do not take advantage of the information available from high density electrode arrays recordings. <br> In this thesis, I introduce two novel models that exploit spatial information conveyed by the extracellular signal recorded on this type of arrays. A simple model to localise the neural soma in three dimensional space and a model to parametrise salient morphological features of neurons. <br> These models provide information that will prove useful when studying detailed organisations in neural networks. The localisation and morphological classification of neurons requires models that captures the features that impact the pattern induced at short recording distances as those achieved on high density electrode array recordings. <br> Both localisation and classification must be tested for different morphological classes, as found in cortex. In order to evaluate the models we must first generate realistic simulated data on which models could be tested. Localisation must hold irrespective of neuronal type while classification is dependant on neuronal type. The different simulated neurons should reflect the different signal patterns seen on real recordings. After validate the models on realistic simulated data we have to evaluate the models on real recordings. <br> <br> The localisation algorithm successfully recovers the position of simulated neurons with low errors for distances within expected ranges in cortex. When localising neurons from real recordings we obtained a distribution of positions that agree with expected ranges in cortex. <br> We separated simulated morphological classes using our classification model, validating the model as a tool to identify morphological classes from extracellular recordings. We also tested this model on real recorded data and using its parameters we identified putative morphological classes. We then verified these classes had different response properties to stimuli and firing patterns, supporting our theory that by using the amplitude pattern of the extracellular potential we can identify different neuronal types. <br> <br> In this thesis we combined the recovered spatial information with response properties from neighbouring neurons, to characterise the functional topographic organisation in deep layers of core auditory cortex. Finding a fractured representation, with local populations having similar response properties and high signal correlation on average, but large differences in response properties were possible. In agreement with recent imaging studies from upper layers of mouse auditory cortex that report smooth tonotopy on a large scale, but fractured tonotopy on a fine scale.