Additional file 2 of Differentiated genomic footprints suggest isolation and long-distance migration of Hmong-Mien populations
Creators: name: He, Guanglin
name: Wang, Peixin
name: Chen, Jing
name: Liu, Yan
name: Sun, Yuntao
name: Hu, Rong
name: Duan, Shuhan
name: Sun, Qiuxia
name: Tang, Renkuan
name: Yang, Junbao
name: Wang, Zhiyong
name: Yun, Libing
name: Hu, Liping
name: Yan, Jiangwei
name: Nie, Shengjie
name: Wei, Lanhai
name: Liu, Chao
name: Wang, Mengge
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2: Fig. S1. Genetic structure of modern and ancient East Asians. Fig. S2. The cross-validation error of model-based ADMIXTURE analysis of 254 modern and ancient populations in the merged Human Origins (HO) dataset. Fig. S3. Population admixture and genetic ancestry among 153 ethnolinguistically diverse modern eastern Eurasians and 101 ancient populations from East Asia and surrounding regions. Fig. S4. The phylogenetic relationships between geographically diverse HM-speaking populations from China and Southeast Asia revealed by TreeMix analysis with the French as the outgroup population. Fig. S5. Model-based ADMIXTURE results of modern and ancient East Asians inferred with predefined ancestral sources ranging from 2 to 11. Fig. S6. Model-based ADMIXTURE results of newly genotyped populations and HM-speaking reference populations from China and Southeast Asia inferred with predefined ancestral sources ranging from 2 to 10. Fig. S7. A formal test of genomic continuity and admixture in She_Pingshui people inferred from f4-statistics in the form f4(Reference population1, Reference population2; She_Pingshui, Mbuti). Fig. S8. A formal test of genomic continuity and admixture in She_Guanshe people inferred from f4-statistics in the form f4(Reference population1, Reference population2; She_Guanshe, Mbuti). Fig. S9. A formal test of genomic continuity and admixture in She_Shanyang people inferred from f4-statistics in the form f4(Reference population1, Reference population2; She_Shanyang, Mbuti). Fig. S10. A formal test of genomic continuity and admixture in Gaoshan_Huaan people inferred from f4-statistics in the form f4(Reference population1, Reference population2; Gaoshan_Huaan, Mbuti). Fig. S11. A formal test of genomic continuity and admixture in She_Guanshe people inferred from f4-statistics in the form f4(Reference population1, She_Guanshe; Reference population2, Mbuti). Fig. S12. A formal test of genomic continuity and admixture in She_Pingshui people inferred from f4-statistics in the form f4(Reference population1, She_Pingshui; Reference population2, Mbuti). Fig. S13. A formal test of genomic continuity and admixture in She_Shanyang people inferred from f4-statistics in the form f4(Reference population1, She_Shanyang; Reference population2, Mbuti). Fig. S14. A formal test of genomic continuity and admixture in Gaoshan_Huaan people inferred from f4-statistics in the form f4(Reference population1, Gaoshan_Huaan; Reference population2, Mbuti). Fig. S15. Demographic history of newly genotyped coastal Huaan Gaoshan population. Fig. S16. Demographic history of newly genotyped coastal Guanshe She population. Fig. S17. Demographic history of newly genotyped coastal Pingshui She population. Fig. S18. Demographic history of newly genotyped coastal Shanyang She population. Fig. S19. The phylogenetic relationship inferred from paternal and maternal lineages. Fig. S20. The effective population sizes (Ne) of inland and coastal HM-speaking populations, and the Yoruba genome was added as a benchmark. The Ne of geographically diverse HM-speaking populations was zoomed in Fig. 3a. Fig. S21. The annotation results of candidate signatures of natural selection identified based on PBS, Fst, iHS, and XPEHH approaches. Fig. S22. The signatures of natural selection specific to Inland HM1 and Coastal HM were identified based on the PBS approach. Fig. S23. The annotation results of candidate genes of natural selection specific to one regional HM-speaking population identified based on Fst, iHS, and XPEHH approaches.