cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
title: Revisiting adaptations of neotropical katydids (Orthoptera: Tettigoniidae) to gleaning bat predation
Creators: name: Hofstede, Hannah Ter
name: Voigt-Heucke, Silke
name: Lang, Alexander
name: Römer, Heinrich
name: Page, Rachel
name: Faure, Paul
name: Dechmann, Dina K. N.
Publisher: name: Freie Universität Berlin
Year: 2017
Subjects: subject: anti-predator defenses
subject: Chiroptera
subject: eavesdropping
subject: Panama
subject: predator-prey arms race
classificationCode: 576
subject: Genetik und Evolution

description: All animals have defenses against predators, but assessing the effectiveness of such traits is challenging. Neotropical katydids (Orthoptera: Tettigoniidae) are an abundant, ubiquitous, and diverse group of large insects eaten by a variety of predators, including substrate-gleaning bats. Gleaning bats capture food from surfaces and usually use prey-generated sounds to detect and locate prey. A number of Neotropical katydid signaling traits, such as the emission of ultrasonic frequencies, substrate vibration communication, infrequent calling, and ultrasound-evoked song cessation are thought to have evolved as defenses against substrate-gleaning bats. We collected insect remains from hairy big-eared bat (Micronycteris hirsuta) roosts in Panama. We identified insect remains to order, species, or genus and quantified the proportion of prey with defenses against predatory bats based on defenses described in the literature. Most remains were from katydids and half of those were from species with documented defenses against substrate-gleaning bats. Many culled remains were from insects that do not emit mate-calling songs (e.g. beetles, dragonflies, cockroaches, and female katydids), indicating that eavesdropping on prey signals is not the only prey-finding strategy used by this bat. Our results show that substrate-gleaning bats can occasionally overcome katydid defenses.
Lecanora hybocarpa Brodo
Creators: name: Ahmad, Uswa Fatima
name: Zulfiqar, Rizwana
name: Naheed, Muqaddas
name: Nadeem, Muhammad
name: Habib, Kamran
name: Niazi, Abdul Rehman
name: Khalid, Abdul Nasir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Ascomycota
Lecanoromycetes
Lecanorales
Lecanoraceae
Lecanora
Lecanora hybocarpa

description: Lecanora hybocarpa (Tuck.) Brodo, Beih. Nova Hedwigia 79: 134 (1984)
Fig. 11 B
Notes.
This species is characterized by a continuous to rimose-areolate thallus, large crystals in the thalline margin, pale brown to red-orange discs and granules in the epithecium that dissolve in K (Cannon et al. 2022). It is distributed across Europe, Spain, and the USA (https://www.gbif.org/). In Pakistan, it was previously reported from Kalam, Swat (Aptroot and Iqbal 2012) and is now recorded from Diamer, Gilgit-Baltistan.
Material examined.
Pakistan ∙ Gilgit-Baltistan, District Diamer, Raikot; 35°23.9'N, 74°04.7'E; alt. 1200 m a. s. l.; 05 Aug. 2023; N. S. Afshan & A. R. Niazi leg.; on rock; FM- 22, ITS GenBank accession number PQ 469043.
description: Published as part of Ahmad, Uswa Fatima, Zulfiqar, Rizwana, Naheed, Muqaddas, Nadeem, Muhammad, Habib, Kamran, Niazi, Abdul Rehman & Khalid, Abdul Nasir, 2024, A systematic study of some lichenized fungi from Pakistan using nrITS marker, pp. 75-96 in Italian Botanist 18 on pages 75-96, DOI: 10.3897/italianbotanist.18.133246
Additional file 1 of Incidence and risk factors of neonatal bacterial infections: a community-based cohort from Madagascar (2018–2021)
Creators: name: Devred, Ines
name: Rambliere, Lison
name: Herindrainy, Perlinot
name: Andriamarohasina, Lovarivelo
name: Harimanana, Aina
name: Randrianirina, Frederique
name: Ratsima, Elisoa Hariniaina
name: Hivernaud, Delphine
name: Kermorvant-Duchemin, Elsa
name: Andrianirina, Zafitsara Zo
name: Abdou, Armya Youssouf
name: Delarocque-Astagneau, Elisabeth
name: Guillemot, Didier
name: Crucitti, Tania
name: Collard, Jean-Marc
name: Huynh, Bich-Tram
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Supplementary Material 1
Additional file 1 of Conservative versus liberal oxygen therapy for intensive care unit patients: meta-analysis of randomized controlled trials
Creators: name: Li, Xin-yu
name: Dai, Bing
name: Hou, Hai-jia
name: Zhao, Hong-wen
name: Wang, Wei
name: Kang, Jian
name: Tan, Wei
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Science Policy

description: Additional file 1:  Search strategy. Table S1. Demographic details of the included studies. Table S2. Primary diagnosis or comorbidities of the included studies. Table S3. Comorbidities of the included studies in medical ICU and Mixed ICU. Table S4. Adverse events of the included studies. Figure S1. Assessment on the risk of bias for the included RCTs. Figure S2. Funnel plot of mortality at the longest follow-up for the included studies. Figure S3. The GRADE assessment of the certainty of the evidence. Figure S4. Mortality at 30 days and TSA of the the included studies. Figure S5. Mortality at 90 days and TSA of the the included studies. Figure S6. Subgroup analysis of 30-day mortality for the included studies. Figure S7. Subgroup analysis of 90-day mortality for the included studies. Figure S8. TSA of 30-day mortality (subgroup analysis) for the included studies. Figure S9. TSA of 90-day mortality (subgroup analysis) for the included studies. Figure S10. TSA of mortality at the longest follow-up (subgroup analysis) for the included studies. Figure S11. Secondary outcomes for the included studies. Figure S12. Funnel plot of secondary outcomes for the included studies. Figure S13. TSA of secondary outcomes for the included studies. Figure S14. TSA of adverse evevts for the included studies. Figure S15. TSA of adverse evevts (subgroup analysis) for the included studies. Table S5. Meta-analysis of different oxygenation targets in recent years. Table S6. PRISMA2020 checklist.
Black-box Adversarial Transferability: An Empirical Study in Cybersecurity Perspective
Creators: name: Roshan, Khushnaseeb
name: Zafar, Aasim
Publisher: name: arXiv
Year: 2024
Subjects: subject: Cryptography and Security (cs.CR)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: The rapid advancement of artificial intelligence within the realm of cybersecurity raises significant security concerns. The vulnerability of deep learning models in adversarial attacks is one of the major issues. In adversarial machine learning, malicious users try to fool the deep learning model by inserting adversarial perturbation inputs into the model during its training or testing phase. Subsequently, it reduces the model confidence score and results in incorrect classifications. The novel key contribution of the research is to empirically test the black-box adversarial transferability phenomena in cyber attack detection systems. It indicates that the adversarial perturbation input generated through the surrogate model has a similar impact on the target model in producing the incorrect classification. To empirically validate this phenomenon, surrogate and target models are used. The adversarial perturbation inputs are generated based on the surrogate-model for which the hacker has complete information. Based on these adversarial perturbation inputs, both surrogate and target models are evaluated during the inference phase. We have done extensive experimentation over the CICDDoS-2019 dataset, and the results are classified in terms of various performance metrics like accuracy, precision, recall, and f1-score. The findings indicate that any deep learning model is highly susceptible to adversarial attacks, even if the attacker does not have access to the internal details of the target model. The results also indicate that white-box adversarial attacks have a severe impact compared to black-box adversarial attacks. There is a need to investigate and explore adversarial defence techniques to increase the robustness of the deep learning models against adversarial attacks.
description: Submitted to Computer & Security (Elsevier)
Beaconing D6.2 Large-Scale Pilot Setup
Creators: name: Türker, Mustafa Ali
Publisher: name: Zenodo
Year: 2017
Subjects: game-based learning, game-based education

description: The educational sector around the world is undergoing a transformation and a re-engineering process with the introduction of digital technologies that make the learning process more personal, more efficient and motivating. Educational technologies, such as mobile learning, serious games and geolocation aware services, pervasively connect learning designers, teachers and students beyond the classroom walls. The Internet has made raw knowledge accessible anytime, anywhere and digital coaches and content made skills acquisition available to anyone, sometimes not requiring even a school to attend. Schools are being transformed into establishments where students develop habits of mind and thinking skills for an increasingly obscure future. The lines between subject areas are blurring and most schools adopt an “anti-disciplinary” approach, introducing STEM topics to promote “trans-disciplinary” learning. One way to make this process more of discovery, passion, and joy is to introduce gaming principles and let the students regard learning as a game, rather than, for instance, a tedious test prep process. BEACONING project aims to provide gamified learning paths for individual students (even with disabilities) to follow on their own terms and as a group, while empowering the teachers to help them become masters of their own learning. BEACONING is an innovation action project that will bring this ecosystem of game-based learning over 5000 users across eight countries in large-scale pilots. Three key partners of the project will access school networks and implement the pilots described in this document throughout 2018. The Spring-term pilots aims at technical and pedagogical evaluations, while the autumn-term pilots will be implemented to evaluate business value and impact of the project outcomes. Web-based community building tools will be employed for teachers, head teachers, and policymakers.
Corrigendum to "Applications of Strassen's theorem and Choquet theory to optimal transport problems, to uniformly convex functions and to uniformly smooth functions"
Creators: name: Ciosmak, Krzysztof Jan
Publisher: name: arXiv
Year: 2024
Subjects: subject: Functional Analysis (math.FA)
subject: Optimization and Control (math.OC)
subject: Probability (math.PR)
subject: FOS: Mathematics
subject: Primary 46A55, 49N15, 26B25, Secondary 60G42, 90C46, 49N05, 47H05

description: In [K.J. Ciosmak, Applications of Strassen's theorem and Choquet theory to optimal transport problems, to uniformly convex functions and to uniformly smooth functions, Nonlinear Anal. 232 (2023), Paper No. 113267, 32 pp.], Theorem 2.3. does not suffice for its applications. We strengthen Theorem 2.1. and Theorem 2.3., so that they imply their claimed consequences. Moreover, we correct a minor flaw in the proof of Proposition 2.4..
description: The article is a corrigendum to arXiv:2001.11292. Both the paper and the corrigendum are published in Nonlinear Analysis
title: Experimental and theoretical study of resonant core-hole spectroscopies of gas-phase free-base phthalocyanine
Creators: name: Moura, Carlos E. V. De
name: Laurent, J.
name: Bozek, John D.
name: Briant, M.
name: Çarçabal, P.
name: Cubaynes, Denis
name: Shafizadeh, N.
name: Simon, M.
name: Soep, B.
name: Püttner, Ralph
Publisher: name: Freie Universität Berlin
Year: 2023
Subjects: subject: Experimental and theoretical study
subject: resonant core-hole spectroscopies
subject: gas-phase free-base phthalocyanine
classificationCode: 541
subject: Physikalische Chemie

description: We studied N 1s−1 inner-shell processes of the free base Phthalocyanine molecule, H2Pc, in the gas-phase. This complex organic molecule contains three different nitrogen sites defined by their covalent bonds. We identify the contribution of each site in ionized, core–shell excited or relaxed electronic states by the use of different theoretical methods. In particular, we present resonant Auger spectra along with a tentative new theoretical approach based on multiconfiguration self-consistent field calculations to simulate them. These calculations may pave the road towards resonant Auger spectroscopy in complex molecules.
title: Risk aversion can promote cooperation
Creators: name: Armas, Jay
name: Merbis, Wout
name: Meylahn, Janusz M.
name: Rafiee Rad, Soroush
name: Razo, Mauricio J. Del
Publisher: name: Freie Universität Berlin
Year: 2025
Subjects: subject: risk aversion
subject: cooperation
subject: population games
subject: reaction networks
subject: stochastic petri net
classificationCode: 510
subject: Mathematik

description: Cooperative dynamics are central to our understanding of many phenomena in living and complex systems. However, we lack a universal mechanism to explain the emergence of cooperation. We present a novel framework for modelling social dilemma games with an arbitrary number of players by combining reaction networks, methods from quantum mechanics applied to stochastic complex systems, game theory and stochastic simulations of molecular reactions. Using this framework, we propose a novel and robust mechanism for cooperation based on risk aversion that leads to cooperative behaviour in population games. Rather than individuals seeking to maximise payouts in the long run, individuals seek to obtain a minimum set of resources with a given level of confidence and in a limited time span. We show that this mechanism can lead to the emergence of new equilibria in a range of social dilemma games.
Additional file 1 of MCProj: metacell projection for interpretable and quantitative use of transcriptional atlases
Creators: name: Ben-Kiki, Oren
name: Bercovich, Akhiad
name: Lifshitz, Aviezer
name: Raz, Ofir
name: Brook, Dror
name: Tanay, Amos
Publisher: name: figshare
Year: 2023
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Hematology
subject: Plant Biology

description: Additional file 1: Fig S1. Validation: leave-one-batch-out projections. Similar to Fig. 2A. Counting cells classified according to their reference annotated type and the type assigned to their query metacell by scARCHES. Fig S2. Validation: leave-one-batch-out projections. Similar to Fig. 2A. Counting cells classified according to their reference annotated type and the type assigned to their query metacell by Seurat. Fig S3. Validation: leave-one-batch-out projections. Similar to Fig. 2A. Counting cells classified according to their reference annotated type and the type assigned to their query metacell by scMAP. Fig S4. Validation: leave-one-type-out projections. Similar to Fig. 3A. Counting cells classified according to their reference annotated type and the type assigned to their query metacell by scARCHES. Fig S5. Validation: leave-one-type-out projections. Similar to Fig. 3A. Counting cells classified according to their reference annotated type and the type assigned to their query metacell by Seurat. Fig S6. Validation: leave-one-type-out projections. Similar to Fig. 3A. Counting cells classified according to their reference annotated type and the type assigned to their query metacell by scMAP. Fig S7. The fraction of query cells for which a synthetic technology difference was applied (and was not corrected), which were either not successfully projected, or which were assigned a type different than the expected type, for each of the methods we compared, very close to Fig. 2B.
Supplementary document for Monolithic all-Silicon Flat lens for broadband LWIR Imaging - 5349159.pdf
Creators: name: Kigner, Orrin
name: Meem, Monjurul
name: Baker, Brian
name: Banerji, Sourangsu
name: Menon, Rajesh
name: hon, philip
name: Sensale-Rodriguez, Berardi
Publisher: name: Optica Publishing Group
Year: 2021
Subjects: subject: 20501 Classical and Physical Optics
subject: FOS: Physical sciences

description: Supplementary information
The Cobis Linked Open Data Project And Portal
Creators: name: Schiavone, Luisa
name: Morando, Federico
Publisher: name: Zenodo
Year: 2017
Subjects: Linked Open Data
CoBiS
Libraries
LISA VIII
RDF
Turin
Torino
RML
Italy
LOD
Osservatorio astrofisico di Torino
Turin Astrophysical Observatory
INAF
Istituto Nazionale di Astrofisica
National Institute for Astrophysics

description: The CoBiS (Coordination Committee of Turin Metropolitan Area Special and Specialized Libraries) is a network formed by 65 libraries. The CoBiS Linked Open Data project is a pilot for Piedmont Region and has the purpose to provide the Committee with an infrastructure for LOD publishing, creating a triplification pipeline designed to be easy to automate and replicate.

This will be realized with open source technologies, such as the RML mapping language that uses Linked Data to describe the conversion of XML, JSON or tabular data into RDF.

The first challenge of the project consists in making possible the dialog of heterogeneous data sources, coming from four different library softwares: Clavis, Erasmo, SBNWeb and BIBLIOWin 5.0web.

The type of linked data is also different: bibliographic data, multimedia content, and archival data managed using xDams software.

The information contained in the catalogs will be interlinked with external data sources, in particular Wikidata, VIAF, LoC and BNF authority files, Wikipedia and Dizionario Biografico degli Italiani.

All this will make possible not only the connection of the information available within the CoBiS network with the rest of the world, but also will make CoBiS libraries actually visible and accessible online.

Partners of the CoBiS LOD Project are: National Institute for Astrophysics (INAF), Turin Academy of Sciences, Olivetti Historical Archives Association, Alpine Club National Library, Deputazione Subalpina di Storia Patria, National Institute for Metrological Research (INRIM).

The technical realization of the project is entrusted to Synapta, and it is partially sponsored by Piedmont Region.

In its first step, it aims to promote in particular local holdings, without excluding in the near future a wider participation both on institutional and territorial level.
Peltigera praetextata Zopf
Creators: name: Ahmad, Uswa Fatima
name: Zulfiqar, Rizwana
name: Naheed, Muqaddas
name: Nadeem, Muhammad
name: Habib, Kamran
name: Niazi, Abdul Rehman
name: Khalid, Abdul Nasir
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Fungi
Ascomycota
Lecanoromycetes
Peltigerales
Peltigeraceae
Peltigera
Peltigera praetextata

description: Peltigera praetextata (Flörke ex Sommerf.) Zopf, Ann. Chemie 364: 299 (1909)
Fig. 11 C
Notes.
This species is characterized by tomentose lobe margins along with laminal and marginal phyllidia (Goward 1995). It is morphologically and phylogenetically similar to P. canina (L.) Willd., but the latter differs in having branched rhizines and lacking isidia (Wei et al. 2009). Its distribution spans China, Europe, India, Japan, Nepal, New Zealand, North America, South Korea, and the United States (Awasthi and Joshi 1982; Park 1990; Wei 1991; Vitikainen 1994; Galloway 2000; Brodo et al. 2001; Hur et al. 2005). In Pakistan, previous collections were made from Utror, Swat (Aptroot and Iqbal 2010), while the new specimen was collected from Kumrat Valley. This study provides the first molecular confirmation of Peltigera praetextata from Pakistan.
Material examined.
Pakistan ∙ Khyber Pakhtunkhwa Province, District Upper Dir, Kumrat Valley, 35°33.6'N, 72°12.4'E; alt. 2,500 m a. s. l.; 23 Sep. 2023; M. Usman & A. N. Khalid leg.; on soil; KUM- 10, ITS GenBank accession number PQ 469042.
description: Published as part of Ahmad, Uswa Fatima, Zulfiqar, Rizwana, Naheed, Muqaddas, Nadeem, Muhammad, Habib, Kamran, Niazi, Abdul Rehman & Khalid, Abdul Nasir, 2024, A systematic study of some lichenized fungi from Pakistan using nrITS marker, pp. 75-96 in Italian Botanist 18 on pages 75-96, DOI: 10.3897/italianbotanist.18.133246
Supplementary document for Mid-infrared frequency comb with 25 pJ threshold via CW-seeded optical parametric generation in nonlinear waveguide - 5346785.pdf
Creators: name: Roiz, Mikhail
name: Lai, Jui-Yu
name: Karhu, Juho
name: Vainio, Markku
Publisher: name: Optica Publishing Group
Year: 2021
Subjects: subject: 20503 Nonlinear Optics and Spectroscopy
subject: FOS: Physical sciences

description: Supplementary material
title: A slow-fast trait continuum at the whole community level in relation to land-use intensification
Creators: name: Neyret, Margot
name: Le Provost, Gaëtane
name: Boesing, Andrea Larissa
name: Schneider, Florian D.
name: Baulechner, Dennis
name: Bergmann, Joana
name: Vries, Franciska T.De
name: Fiore-Donno, Anna Maria
name: Geisen, Stefan
name: Rillig, Matthias C.
Publisher: name: Freie Universität Berlin
Year: 2024
Subjects: subject: Community ecology
subject: Ecosystem ecology
subject: slow-fast trait continuum
classificationCode: 570
subject: Biowissenschaften; Biologie

description: Organismal functional strategies form a continuum from slow- to fast-growing organisms, in response to common drivers such as resource availability and disturbance. However, whether there is synchronisation of these strategies at the entire community level is unclear. Here, we combine trait data for >2800 above- and belowground taxa from 14 trophic guilds spanning a disturbance and resource availability gradient in German grasslands. The results indicate that most guilds consistently respond to these drivers through both direct and trophically mediated effects, resulting in a ‘slow-fast’ axis at the level of the entire community. Using 15 indicators of carbon and nutrient fluxes, biomass production and decomposition, we also show that fast trait communities are associated with faster rates of ecosystem functioning. These findings demonstrate that ‘slow’ and ‘fast’ strategies can be manifested at the level of whole communities, opening new avenues of ecosystem-level functional classification.
Additional file 1 of Elicitation of native bio protective microbial agents associated systemic defense responses and plant growth promotion against bacterial stalk rot pathogen in sorghum (Sorghum bicolor)
Creators: name: Yadav, Sujata Singh
name: Arya, Anshul
name: Singh, Vishal
name: Singh, Yogendra
Publisher: name: figshare
Year: 2024
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 1. Table S1. Biochemical, physiological, and morphological characterization of isolates of Dickeya dadantii isolated from sorghum plants. Table S2. Details of Origin, Identification, GenBank accession numbers, and confrontation assay of antagonistic isolates. Table S3. Effect of seed biopriming and soil application antagonist microbes on growth promotion and disease severity under glasshouse conditions at 35 and 50 DAS. Table S4. Effect of seed bio priming and soil application antagonist microbes on growth promotion and disease severity under field conditions at 35, 50, 65, and 80 DAS 2017. Table S5. Effect of seed bio priming and soil application antagonist microbes on growth promotion and disease severity under field conditions at 35, 50, 65, and 80 DAS 2018.
sj-pdf-1-atl-10.1177_02611929211060264 – Supplemental Material for A Systematic Review of Published Physiologically based Kinetic Models and an Assessment of their Chemical Space Coverage
Creators: name: Thompson, Courtney V.
name: Firman, James W.
name: Goldsmith, Michael R.
name: Grulke, Christopher M.
name: Tan, Yu-Mei
name: Paini, Alicia
name: Penson, Peter E.
name: Sayre, Risa R
name: Webb, Steven
name: Madden, Judith C.
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: FOS: Clinical medicine

description: Supplemental Material, sj-pdf-1-atl-10.1177_02611929211060264 for A Systematic Review of Published Physiologically based Kinetic Models and an Assessment of their Chemical Space Coverage by Courtney V Thompson, James W Firman, Michael R Goldsmith, Christopher M Grulke, Yu-Mei Tan, Alicia Paini, Peter E Penson, Risa R Sayre, Steven Webb and Judith C Madden in Alternatives to Laboratory Animals
Additional file 2 of MCProj: metacell projection for interpretable and quantitative use of transcriptional atlases
Creators: name: Ben-Kiki, Oren
name: Bercovich, Akhiad
name: Lifshitz, Aviezer
name: Raz, Ofir
name: Brook, Dror
name: Tanay, Amos
Publisher: name: figshare
Year: 2024
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Hematology
subject: Plant Biology

description: Additional file 2. Review History.
Supplementary document for Maximum possible contrast level for silent substitution: a theoretical model applied to melanopsin stimulation - 5352470.pdf
Creators: name: Evéquoz, Gilles
name: Truffer, Frederic
name: Geiser, Martial
Publisher: name: Optica Publishing Group
Year: 2021
Subjects: subject: 20599 Optical Physics not elsewhere classified
subject: FOS: Physical sciences
subject: 111303 Vision Science
subject: FOS: Clinical medicine

description: Supplemental Document 1: Mathematical proofs and details
Supplementary document for Nonlabeled detection of specific intermolecular bondings by terahertz surface plasmon resonance of topological insulator - 5308599.pdf
Creators: name: Sugimoto, Hinano
name: TABATA, Hitoshi
Publisher: name: Optica Publishing Group
Year: 2021
Subjects: subject: 40607 Surface Processes
subject: FOS: Earth and related environmental sciences

description: Fig. S1, The mechanism of the resonance frequency shift; Fig. S2, THz transmittances before and after experiments
Seasonal Weather Impacts on Biomass Production of Moringa oleifera at Different Fertilizer Doses
Creators: name: Huda, Nazmul
name: Shahidul Haque, Khan
name: Kumer Roy, Biplob
name: Ram Sarker, Nathu
Publisher: name: International Journal of Health, Animal Science and Food Safety
Year: 2017
Subjects: Season, Fertilizer, Biomass production, Chemical composition, Weather

description: A year round agronomical trial was conducted on station (Bangladesh Livestock Research Institute) to investigate the impact of seasonal variations on biomass production of Moringa oleifera at different fertilizer doses in Bangladesh. A 6×3 factorial arrangement in a completely randomized design (CRD) was applied on 20m×12m =240 m2 size plot, established in 2006 with a plant density of 13,500/hectare, was equally divided into 18 sub-plots and randomly grouped into three; 6 plots was treated as control, 6 plots was treated as medium with medium doses of fertilizer and rest 6 was treated as high fertilizer dose with the ratio of N.P.K was 90:30:15 and 160:60:40 kg/ha, respectively. The obtained result revealed that, the summer was the best season and autumn, monsoon and spring was also favorable for getting maximum yield of Moringa oleifera with ambient temperature ranges 27-320C and fertilization dose N:P:K= 90:30:15 is suitable for optimum moringa production and chemical composition of moringa varied with season and slightly with fertilization.
description: International Journal of Health, Animal Science and Food Safety, V. 4, N. 1 (2017)
title: Seroprevalence and Molecular Identification of Brucella spp. in Camels in Egypt
Creators: name: Khan, Aman Ullah
name: Sayour, Ashraf E.
name: Melzer, Falk
name: El-Soally, Sherif Abdel Ghafar Elsayed
name: Elschner, Mandy C.
name: Shell, Waleed S.
name: Moawad, Amira A.
name: Mohamed, Shereen Aziz
name: Hendam, Ashraf
name: Roesler, Uwe
name: Neubauer, Heinrich
name: El-Adawy, Hosny
Publisher: name: Freie Universität Berlin
Year: 2020
Subjects: subject: brucellosis
subject: camel
subject: B. suis
subject: Egypt
subject: seroprevalence
subject: real-time PCR
classificationCode: 630
subject: Landwirtschaft und verwandte Bereiche
classificationCode: 616
subject: Krankheiten

description: Brucellosis is one of the most important worldwide zoonoses of many countries including Egypt. Camel brucellosis has not gained much attention in Egypt yet. This study is focused on the three governorates with the highest camel populations and the largest camel markets in the country to determine the disease seroprevalence and identify the Brucella species in local camel holdings. In total, 381 serum samples were collected from male and female camels from Giza, Aswan, and Al-Bahr Al-Ahmar (the Red Sea) governorates. Samples were serologically examined using the Rose–Bengal plate test (RBPT), indirect ELISA (i-ELISA), competitive ELISA (c-ELISA) and complement fixation test (CFT). Brucella antibodies were detected in 59 (15.5%), 87 (22.8%), 77 (20.2%) and 118 (31.0%) of sera by RBPT, i-ELISA, c-ELISA and CFT, respectively. Using real-time PCR, Brucella DNA was amplified in 32 (8.4%) seropositive samples including Brucella abortus (25/32), Brucella suis (5/32) and Brucella melitensis (2/32), defining a complex epidemiological status. To the best of our knowledge, this is the first study reporting Brucella suis DNA in camel serum. The risk-associated factors including age, sex, breed and geographical distribution were statistically analyzed, showing non-significant association with seroprevalence. The results of this study will raise awareness for camel brucellosis and help develop effective control strategies.
Additional file 2 of Elicitation of native bio protective microbial agents associated systemic defense responses and plant growth promotion against bacterial stalk rot pathogen in sorghum (Sorghum bicolor)
Creators: name: Yadav, Sujata Singh
name: Arya, Anshul
name: Singh, Vishal
name: Singh, Yogendra
Publisher: name: figshare
Year: 2024
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 2 Figure S1. Effects of seed biopriming and soil application antagonist microbes on disease development in sorghum under pathogenic stress conditions. Figure S2. Rotting symptom of bacterial stalk rot in sorghum under field conditions. Figure S3. Flow chart of the experimental design.
Additional file 1 of Cholesterol intake and serum total cholesterol levels are not associated with total testosterone levels in men: a cross-sectional study from NHANES 2013–2014
Creators: name: Gomes, Gederson K.
name: de Branco, Flávia M. S.
name: Santos, Heitor O.
name: Pereira, Jaqueline L.
name: Orsatti, Fábio L.
name: de Oliveira, Erick P.
Publisher: name: figshare
Year: 2023
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Chemical Sciences not elsewhere classified
subject: Science Policy
subject: Mental Health

description: Additional file 1: Supplemental Table 1. Linear regression of quintiles of dietary cholesterol and serum total cholesterol levels with total testosterone levels in men aged 20-80 y from the NHANES, 2013-2014.
title: Prototheca zopfii genotype 2 disseminated infection in a dog with neurological signs
Creators: name: Sonne, Luciana
name: Oliveira, Eduardo Conceicao De
name: Argenta, Fernando Froner
name: Monteggia, Rafael Souza
name: Ferreiro, Laerte
name: Rösler, Uwe
name: Kershaw, Olivia
name: Driemeier, David
Publisher: name: Freie Universität Berlin
Year: 2017
Subjects: subject: canine
subject: disseminated protothecosis
subject: Prototheca zopfii genotype 2
classificationCode: 630
subject: Landwirtschaft
classificationCode: 636
subject: Viehwirtschaft

description: Prototheca zopfii is an alga that can cause disease in animals and humans. Here, we reported a case of systemic protothecosis in a 2-year-old female Boxer. The animal exhibited tetraparesis and vertical nystagmus. It died two weeks after the onset of clinical signs and was necropsied. At gross examination, whitish areas were identified in the heart. Oval or round structures were observed by microscopic examination, some of which formed morula-like structures compatible with algae in the heart, skeletal muscle, and brain. Growth of Prototheca sp. was observed in the heart after culture at 37°C on Sabouraud agar medium with chloramphenicol. Immunohistochemical analysis of the heart and brain using an anti-Prototheca zopfii polyclonal antibody yielded positive results. Genotyping of the cultured agent from brain and heart samples was performed by restriction fragment length polymorphism of a specific 18S rDNA fragment. P. zopfii genotype 2 was reported to be the cause of disseminated protothecosis in this dog with manifestation in the brain, heart, and skeletal muscle.
Flow cytometry for feline lymphoma: a retrospective study about pre-analytical factors possibly affecting the quality of samples
Creators: name: Bernardi, Serena
name: Martini, Valeria
name: Marelli, Priscilla
name: Cozzi, Marzia
name: Comazzi, Stefano
Publisher: name: International Journal of Health, Animal Science and Food Safety
Year: 2017
Subjects: Flow cytometry, Cat, Lymphoma, Sample quality, Preanalitycal variability, Needle size

description: Introduction Flow cytometry (FC) is an increasingly required technique on which veterinary oncologists rely to have an accurate, fast, minimally invasive lymphoma or leukemia diagnosis. FC has been studied and applied with great results in canine oncology, whereas in feline oncology the use of this technique is still to be experienced. This is mainly due to a supposed discomfort in sampling, because of the high prevalence of intra-abdominal lymphomas. The purpose of the present study is to investigate whether any pre-analytical factor might affect the quality of suspected feline lymphoma samples for FC analysis.

Methods 97 consecutive samples of suspected feline lymphoma were retrospectively selected from the authors’ institution FC database. The referring veterinarians were recalled and interrogated about several different variables, including signalling, features of the lesion, features of the sampling procedure and the experience of veterinarians performing the sampling. Statistical analyses were performed to assess the possible influence of these variables on the cellularity of the samples and the likelihood of being finally processed for FC.

Results None of the investigated variables significantly influenced the quality of the submitted samples, but the needle size, with 21G needles providing the highest cellularity (Table 1). Notably, the samples quality did not vary between peripheral and intra-abdominal lesions. Sample cellularity alone influenced the likelihood of being processed. About a half of the cats required pharmacological restraint. Side effects were reported in one case only (transient swelling after peripheral lymph node sampling).

Conclusions FC can be safely applied to cases of suspected feline lymphomas, even for intra-abdominal lesions. 21G needle should be preferred for sampling. This study provides the bases for the spread of this minimally invasive, fast and cost-effective technique in feline medicine.
description: International Journal of Health, Animal Science and Food Safety, V. 4, N. 1s (2017)
title: Structure of Diamond Films Grown Using High-Speed Flow of a Thermally Activated CH4-H2 Gas Mixture
Creators: name: Fedoseeva, Yuliya V.
name: Gorodetskiy, D. V.
name: Baskakova, K. I.
name: Asanov, Igor P.
name: Bulusheva, Lyubov G.
name: Makarova, A. A.
name: Yudin, I. B.
name: Plotnikov, M. Yu.
name: Emelyanov, A. A.
name: Rebrov, A. K.
name: Okotrub, A. V.
Publisher: name: Freie Universität Berlin
Year: 2020
Subjects: subject: diamond film
subject: high-speed gas flow
subject: jet-deposition
subject: surface coating
subject: XPS
subject: NEXAFS
classificationCode: 540
subject: Chemie und zugeordnete Wissenschaften

description: Diamond films are advanced engineering materials for various industrial applications requiring a coating material with extremely high thermal conductivity and low electrical conductivity. An approach for the synthesis of diamond films via high-speed jet deposition of thermally activated gas has been applied. In this method, spatially separated high-speed flows of methane and hydrogen were thermally activated, and methyl and hydrogen radicals were deposited on heated molybdenum substrates. The morphology and structure of three diamond films were studied, which were synthesized at a heating power of 900, 1700, or 1800 W, methane flow rate of 10 or 30 sccm, hydrogen flow rate of 1500 or 3500 sccm, and duration of the synthesis from 1.5 to 3 h.The morphology and electronic state of the carbon on the surface and in the bulk of the obtained films were analyzed by scanning electron microscopy, Raman scattering, X-ray photoelectron, and near-edge X-ray absorption fine structure spectroscopies. The diamond micro-crystals with a thick oxidized amorphous sp2-carbon coating were grown at a heating power of 900 W and a hydrogen flow rate of 1500 sccm. The quality of the crystals was improved, and the growth rate of the diamond film was increased seven times when the heating power was 1700–1800 W and the methane and hydrogen flow rates were 30 and 3500 sccm, respectively. Defective octahedral diamond crystals of 30 μm in size with a thin sp2-carbon surface layer were synthesized on a Mo substrate heated at 1273 K for 1.5 h. When the synthesis duration was doubled, and the substrate temperature was decreased to 1073 K, the denser film with rhombic-dodecahedron diamond crystals was grown. In this case, the thinnest hydrogenated sp2-carbon coating was detected on the surface of the diamond crystals. View Full-Text
sj-pdf-1-eqs-10.1177_87552930211056963 – Supplemental material for Ergodic site response model for subduction zone regions
Creators: name: Parker, Grace A
name: Stewart, Jonathan P
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 99999 Engineering not elsewhere classified
subject: FOS: Other engineering and technologies

description: Supplemental material, sj-pdf-1-eqs-10.1177_87552930211056963 for Ergodic site response model for subduction zone regions by Grace A Parker and Jonathan P Stewart in Earthquake Spectra
sj-docx-1-asu-10.1177_0003134820976080 – Supplemental Material for Efficacy of a Nasogastric Tube Educational Intervention for Nursing Staff
Creators: name: Kaltenmeier, Christof
name: Littleton, Elizabeth
name: Carozza, Lisa
name: Kosko, Risa
name: Althans, Alison
name: Lawrence, Barbara
name: Hamad, Giselle
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 110323 Surgery
subject: FOS: Clinical medicine

description: Supplemental Material, sj-docx-1-asu-10.1177_0003134820976080 for Efficacy of a Nasogastric Tube Educational Intervention for Nursing Staff by Christof Kaltenmeier, Elizabeth Littleton, Lisa Carozza, Risa Kosko, Alison Althans, Barbara Lawrence and Giselle Hamad in The American Surgeon
Additional file 1 of Exploring a revised interprofessional learning curriculum in undergraduate health education programs at Linköping University
Creators: name: Karlsson, Elin A.
name: Kvarnström, Susanne
name: Kvarnström, Maria
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Supplementary Material 1.
Gravitational radiation of a spherically symmetric source in $f(R)$-gravitation
Creators: name: Van Ky, Pham
name: Van, Nguyen Thi Hong
name: Ky, Nguyen Anh
Publisher: name: arXiv
Year: 2024
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: It is shown that Birkhoff's theorem for the general theory of relativity is overcome in the $f(R)$-theory of gravitation. That means, the $f(R)$-theory of gravitation, unlike Einstein's general theory of relativity, does not forbid gravitational radiation from a spherically symmetric source (whether stationary or non-stationary). As a consequence, in the $f(R)$-theory a spherically symmetric gravitational deformation (e.g., collapse/expansion or pulsation) could emit gravitational waves (of tensor- and scalar polarization modes), a phenomenon impossible in the general relativity. A test model is examined and it turns out that the gravitational radiation is strongest when the surface of the deforming object is in the vicinity of the (modified) event horizon, even suddenly flares up just outside the latter. In this letter, within the $f(R)$-theory of gravitation, a gravitational wave equation and a formula for the gravitational emission power are derived. These formulae, along with searching for signals, can be used for the experimental test of the $f(R)$-theory. In general, including the spherically symmetry case, gravitational radiation of both tensor- and scalar polarization modes are allowed, although under some circumstance the contribution of scalar modes is strongly suppressed.
description: LaTeX 10 pages, 5 figures
Aparsen D24.1 - Report On Authenticity And Plan For Interoperable Authenticity Evaluation System
Creators: name: Salza, Silvio
name: Guercio, Mariella
name: Grossi, Monica
name: Pröll, Stefan
name: Strouboulis, Christos
name: Tzitzikas, Yannis
name: Doerr, Martin
name: Giorgos Flouris
Publisher: name: Zenodo
Year: 2012
Subjects: Authenticity
provenance
digital resource lifecycle
authenticity evidence
secure logging
secure storage
provenance models
interoperability
reasoning
inference rules

description: The first part of the report is devoted to the state of art. We analyse the main international projects in the field, as well as the standards, recommendations and guidelines for keeping and preserving digital objects, with a special attention on the management of provenance and authenticity. The state of the art is completed by an extensive reference list and by an appendix where all the major projects in the area, their goals and their results are individually presented. On the whole, the state of the art testifies that significant scientific contributions have been given, and that a good level of theoretical formalization has been achieved in this area, even if a large gap still divides the mostly theoretical results of the scientific community from the actual practices carried on in most repositories. This gap needs to be filled with more concrete guidelines and proposals. Acting in this direction we propose a model of the digital object lifecycle, in order to identify the main events that impact on authenticity and provenance and to investigate in detail, for each of them the evidence that has to be gathered in order to conveniently document the history of the digital object. The crucial problem to be addressed is, of course, interoperability, since along its lifecycle the digital object may go through several changes of custody, and therefore the authenticity evidence needs to be managed and interpreted by systems, both keeping and preservation systems, which may be different from the ones that gathered it. Thus, the authenticity evidence needs to comply with a common standard. Achieving such a standard is a quite an ambitious goal, but some basic guidelines can be developed. The model and the guidelines proposed in this report may be considered as a preliminary step in this direction, and a basis to derive operational guidelines to improve the current (and often very limited) practices in managing authenticity and provenance in keeping and preservation systems. The report also documents other important activities that have been carried as part of APARSEN WP24. Interesting original results are presented about provenance interoperability and reasoning (described in detail at ID2401), which include a discussion of the mapping between different provenance models, and the proposal of a set of relevant reasoning rules for reducing the amount of provenance information that has to be explicitly stored and for making corrections easier. A further discussion is devoted to secure logging mechanisms, a specific aspect of the problem, which has a significant impact on managing authenticity
title: The long non-coding RNA LINDA restrains cellular collapse following DNA damage in Arabidopsis thaliana
Creators: name: Herbst, Josephine
name: Nagy, Solveig Henriette
name: Vercauteren, Ilse
name: Veylder, Lieven De
name: Kunze, Reinhard
Publisher: name: Freie Universität Berlin
Year: 2023
Subjects: subject: long non-coding RNAs
subject: DNA damage response pathway
subject: gene regulation network
subject: cell death
subject: transcriptome analysis
subject: CRISPR/Cas12
subject: Arabidopsis thaliana
classificationCode: 570
subject: Biowissenschaften; Biologie

description: The genomic integrity of every organism is endangered by various intrinsic and extrinsic stresses. To maintain genomic integrity, a sophisticated DNA damage response (DDR) network is activated rapidly after DNA damage. Notably, the fundamental DDR mechanisms are conserved in eukaryotes. However, knowledge about many regulatory aspects of the plant DDR is still limited. Important, yet little understood, regulatory factors of the DDR are the long non-coding RNAs (lncRNAs). In humans, 13 lncRNAs functioning in DDR have been characterized to date, whereas no such lncRNAs have been characterized in plants yet. By meta-analysis, we identified the putative long intergenic non-coding RNA induced by DNA damage (LINDA) that responds strongly to various DNA double-strand break-inducing treatments, but not to replication stress induced by mitomycin C. After DNA damage, LINDA is rapidly induced in an ATM- and SOG1-dependent manner. Intriguingly, the transcriptional response of LINDA to DNA damage is similar to that of its flanking hypothetical protein-encoding gene. Phylogenetic analysis of putative Brassicales and Malvales LINDA homologs indicates that LINDA lncRNAs originate from duplication of a flanking small protein-encoding gene followed by pseudogenization. We demonstrate that LINDA is not only needed for the regulation of this flanking gene but also fine-tuning of the DDR after the occurrence of DNA double-strand breaks. Moreover, Δlinda mutant root stem cells are unable to recover from DNA damage, most likely due to hyper-induced cell death.
sj-pdf-1-srd-10.1177_23780231211067871 – Supplemental material for Race, Poverty, and U.S. Children’s Exposure to Neighborhood Incarceration
Creators: name: Roehrkasse, Alexander F.
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: Sociology
subject: FOS: Sociology

description: Supplemental material, sj-pdf-1-srd-10.1177_23780231211067871 for Race, Poverty, and U.S. Children’s Exposure to Neighborhood Incarceration by Alexander F. Roehrkasse in Socius
Additional file 1 of Bayesian multilevel multivariate logistic regression for superiority decision-making under observable treatment heterogeneity
Creators: name: Kavelaars, Xynthia
name: Mulder, Joris
name: Kaptein, Maurits
Publisher: name: figshare
Year: 2023
Subjects: subject: Statistics
subject: FOS: Mathematics

description: Additional file 1.