cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
title: Инновационные технологии на водном транспорте
Creators: name: ELS IPR BOOKS
Publisher: name: Ай Пи Ар Медиа
Year: 2023

description: Представлены материалы по актуальным направлениям научных работ и инновационным технологиям в области водного транспорта научно-педагогическими работниками и обучающимися в Академии водного транспорта Российского университета транспорта (МИИТ), Московском государственном техническом университете гражданской авиации (МГАТУ ГА), Московском международном университете, Волжском государственном университете водного транспорта, ИТТСУ РУТ (МИИТ), ИУЦТ РУТ (МИИТ), ЭПЦ «Московский эколог», ГПБУ «Мосприрода». Отражены теоретические и методологические аспекты совершенствования процесса перевозки судами водного транспорта, состояния водных путей, гидротехнических сооружений и их экологической безопасности. Издание предназначено для практического применения в научных и образовательных учреждениях, в организациях инфраструктуры водного транспорта.
Βελτιστοποίηση της χαρτογράφησης του γλωσσικού φλοιού μέσω πλοηγούμενης επαναληπτικής Διακρανιακής Μαγνητικής Διέγερσης
Creators: name: Γιομπλιάκη Μαλαματή Λαζάρου
Publisher: name: Aristotle University of Thessaloniki
Year: 2025
Subjects: Επαναληπτική Διακρανιακή Μαγνητικλη Διέγερση
Γλωσσικός φλοιός
Αφασία
rTMS
Language cortex
Aphasia

description: Η Εύβοια αποτελεί σημαντικό κέντρο του Χριστιανισμού με μεγάλο αριθμό Βυζαντινών μνημείων διεσπαρμένων σε όλη την έκτασή της. Ανάμεσα σε αυτά ξεχωριστή θέση κατέχει η Ιερά Μονή Παναγίας Περιβλέπτου που βρίσκεται στο χωριό Πολιτικά του Δήμου Διρφύων-Μεσσαπίων, η οποία δεν έχει τύχει, κατά τη γνώμη μας, της ανάδειξης που της αρμόζει. Σκοπός της παρούσας εργασίας είναι, μέσα από τη σφαιρική παρουσίαση της Μονής (ιστορία, αρχιτεκτονική, ζωγραφικός διάκοσμος), να προβάλλουμε την αξία της τόσο ως ιστορικού μνημείου όσο και ως σημαντικού θρησκευτικού προσκυνήματος. Η μέθοδος εργασίας που ακολουθήσαμε είναι η βιβλιογραφική επισκόπηση, από την οποία προκύπτουν «ανοικτά» ερωτήματα για περαιτέρω διερεύνηση. Στο τέλος προβαίνουμε σε συγκεκριμένες προτάσεις για την αξιοποίηση του μνημείου αυτού τόσο στα πλαίσια εναλλακτικών μορφών τουρισμού (πολιτιστικού και θρησκευτικού) όσο και της τυπικής σχολικής εκπαίδευσης αλλά και των Κατηχητικών Σχολείων.
description: Evia is an important center of Christianity, with a large number of Byzantine monuments scattered throughout its territory. Among these, the Holy Monastery of Panagia Perivleptos, located in the village of Politika in the Municipality of Dirfys-Messapia, holds a special place. In our opinion, however, it has not received the recognition it truly deserves. The purpose of this study is to showcase the significance of the Monastery, both as a historical monument and as an important religious pilgrimage site, through a comprehensive presentation of its history, architecture, and painted decoration. The methodology employed in this work is a bibliographic review, which has revealed “open” questions that warrant further investigation. In the conclusion, we present specific proposals for the promotion and utilization of this monument. These proposals focus on its integration into alternative forms of tourism (cultural and religious), as well as its potential use in formal school education and Catechetical Schools.
Additional file 7 of Pathological hemodynamic changes and leukocyte transmigration disrupt the blood–spinal cord barrier after spinal cord injury
Creators: name: Zhou, Rubing
name: Li, Junzhao
name: Chen, Zhengyang
name: Wang, Ruideng
name: Shen, Yin
name: Zhang, Rong
name: Zhou, Fang
name: Zhang, Yong
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Physical Sciences not elsewhere classified
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Information Systems not elsewhere classified

description: Additional file 7. Full images of western blots presented in main figures.
Tools for Terminology Processing
Creators: name: Enguehard, C.
name: Daille, B.
name: Morin, E.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Computers and Society (cs.CY)
subject: Computation and Language (cs.CL)
subject: FOS: Computer and information sciences

description: Automatic terminology processing appeared 10 years ago when electronic corpora became widely available. Such processing may be statistically or linguistically based and produces terminology resources that can be used in a number of applications : indexing, information retrieval, technology watch, etc. We present the tools that have been developed in the IRIN Institute. They all take as input texts (or collection of texts) and reflect different states of terminology processing: term acquisition, term recognition and term structuring.
title: Ευφυείς μηχανισμοί ασφάλειας σε επίπεδο υλικού με χρήση μεθόδων μηχανικής μάθησης
title: Intelligent hardware security mechanisms using machine learning methods
titleType: AlternativeTitle
Creators: name: Παππά, Αγλαΐα
Publisher: name: Πανεπιστήμιο Δυτικής Αττικής
Year: 2021
Subjects: Ασφάλεια υλικού
Επιθέσεις
Αντίμετρα
Μηχανική μάθηση
Διαδίκτυο πραγμάτων

description: Η απειλή υλικού (hardware threat) είναι οτιδήποτε μπορεί να οδηγήσει σε απώλεια ή καταστροφή δεδομένων ή φυσική ζημιά στο υλικό. Όταν δε οι διάφορες συσκευές (κάθε μία με τις δικές της ευπάθειες) συνδέονται μεταξύ τους μέσω internet τότε το πρόβλημα της ασφάλειας υλικού γίνεται χαοτικό. Η αντιμετώπιση με ανθρώπινες δυνάμεις είναι αδύνατη. Η μηχανική μάθηση είναι αυτή που με τους έξυπνους αλγορίθμους της αναλαμβάνει τη διαχείριση της ασφάλειας εκατομμυρίων συσκευών ταυτόχρονα. Μηχανική Μάθηση σημαίνει α)μάθηση χωρίς ανθρώπινη παρέμβαση και β)μάθηση για πάντα. Μαθαίνει, συγκρίνει, αξιολογεί, προφυλάσσει, προβλέπει. Αν η γνώση είναι δύναμη τότε η εφαρμοσμένη γνώση είναι υπερδύναμη. Η παρούσα διπλωματική εστιάζει στην αντιμετώπιση των κυριότερων ευπαθειών και επιθέσεων υλικού με τα εργαλεία της Μηχανικής Μάθησης. Τέλος ειδική μνεία γίνεται στα προβλήματα που μπορούν να προκύψουν από την κακόβουλη χρήση της καθώς και και νέα πεδία προέκτασης αυτής.
Role of Feedback in AGN-HOST Coevolution: A Study from Partially Obscured Active Galactic Nuclei
Creators: name: Wang, J.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Partially obscured AGNs within a redshift range $z=0.011\sim0.256$ are used to re-study the role of feedback in the AGN-host coevolution issue in terms of their [OIII]$λ$5007 emission line profile. The spectra of these objects enable us to determine the AGN's accretion properties directly from their broad H$α$ emission. This is essential for getting rid of the "circular reasoning" in our previous study of narrow emission-line galaxies, in which the [OIII] emission line was used not only as a proxy of AGN's bolometric luminosity, but also as a diagnostic of outflow. In addition, the measurement of $D_n(4000)$ index is improved by removing an underlying AGN's continuum according to the corresponding broad H$α$ emission. With these improvements, we confirm and reinforce the correlation between $L/L_{\mathrm{Edd}}$ and stellar population age. More important is that this correlation is found to be related to both [OIII] line blue asymmetry and bulk blueshift velocity, which suggests a linkage between SMBH growth and host star formation through the feedback process. The current sample of partially obscured AGNs shows that the composite galaxies have younger host stellar population, higher Eddington ratio, less significant [OIII] blue wing and smaller bulk [OIII] line shift than do the Seyfert galaxies .
description: 22 pages, 13 figures, to be published by NewA
Additional file 1 of Imaging the brain and vascular reactions to headache treatments: a systematic review
Creators: name: Messina, R.
name: Christensen, R. H.
name: Cetta, I.
name: Ashina, M.
name: Filippi, M.
Publisher: name: figshare
Year: 2024
Subjects: Space Science
Medicine
Biological Sciences not elsewhere classified
Cancer
Science Policy

description: Additional file 1: Supplementary Table 1. Search string used for PubMed and Embase databases. Supplementary Table 2. Acupuncture for migraine prophylaxis. Supplementary Table 3. Non-invasive and invasive neuromodulation techniques for migraine prophylaxis. Supplementary Table 4. Behavioral approaches for migraine prophylaxis.
All Politics is Local: How Spatial Context Shapes Civil Conflict
Creators: name: Williams, Rob
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2016

description: Existing studies using spatial data omit many crucial aspects of the conflicts under study. While all models must make simplifying assumptions, these models often reduce space to a simplistic notion of distance. Case studies of civil wars demonstrate how factors such as population density and transportation infrastructure shape the local spatial context of a conflict, and in turn influence the decisions made by combatants. Based on these observations, I discuss how future research can best use the information contained in spatial conflict data by combining it with a more nuanced understanding of the role space plays in the on- set, progression, and resolution of conflict. As an example, I demonstrate how this spatial context approach can build upon current group focused investigations of rebel movement evolution by providing a more complete universe of potential rebel groups, leading to more robust conclusions.
Learning and using relational theories
Creators: name: Kemp, Charles
name: Goodman, Noah D.
name: Tenenbaum, Joshua B.
Publisher: name: Figshare
Year: 2018
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Much of human knowledge is organized into sophisticated systems that are often called intuitive theories. We propose that intuitive theories are mentally represented in a logical language, and that the subjective complexity of a theory is determined by the length of its representation in this language. This complexity measure helps to explain how theories are learned from relational data, and how they support inductive inferences about unobserved relations. We describe two experiments that test our approach, and show that it provide s a better account of human learning and reasoning than an approach developed by Goodman [1]
On a family of polynomials related to $ζ(2,1)=ζ(3)$
Creators: name: Zudilin, Wadim
Publisher: name: arXiv
Year: 2015
Subjects: subject: Number Theory (math.NT)
subject: Mathematical Physics (math-ph)
subject: Classical Analysis and ODEs (math.CA)
subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: FOS: Physical sciences
subject: 11M06, 11M41, 11G55, 33C20

description: We give a new proof of the identity $ζ(\{2,1\}^l)=ζ(\{3\}^l)$ of the multiple zeta values, where $l=1,2,\dots$, using generating functions of the underlying generalized polylogarithms. In the course of study we arrive at (hypergeometric) polynomials satisfying 3-term recurrence relations, whose properties we examine and compare with analogous ones of polynomials originated from an (ex-)conjectural identity of Borwein, Bradley and Broadhurst.
description: 8 pages; v2: minor issues are addressed
Hybrid genome assemblies Illumina/Nanopore of eleven Saccharomyces cerevisiae strains
Creators: name: Campanaro, Stefano
Publisher: name: figshare
Year: 2020
Subjects: subject: Biotechnology
subject: Computational Biology
subject: 60203 Ecological Physiology
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Genetics
subject: 60408 Genomics
subject: 60504 Microbial Ecology
subject: 60503 Microbial Genetics
subject: Microbiology
subject: Molecular Biology
subject: 60409 Molecular Evolution
subject: 60411 Population, Ecological and Evolutionary Genetics
subject: 60412 Quantitative Genetics (incl. Disease and Trait Mapping Genetics)

description: The gDNA of IBSo strains was processed for library preparation at the sequencing facility of CRIBI Biotechnology Center (University of Padova, Italy). TruSeq DNA PCR-Free Library Prep Kit and Reagent kit v2 (paired-end) were used and sequenced on a NextSeq 500 platform (Illumina Inc., San Diego CA). Eleven selected IBSo strains were also sequenced using long reads; libraries were prepared using the SQK-RBK004 rapid sequencing kit and sequenced using a FLO-MIN106 R9 flow cell on a MinION device (Oxford Nanopore Technologies, Oxford, UK). Long reads (Nanopore) were corrected with Canu software (Koren et al., 2017) and assembled with SMARTdenovo (Ruan, 2019); resulting contigs were polished with Pilon software (Walker et al., 2014) using short reads (Illumina) and ordered following S. cerevisiae S288C reference genome using Mauve software (Darling et al., 2010).
Koren, S., Walenz, B.P., Berlin, K., Miller, J.R., Bergman, N.H., Phillippy, A.M., 2017. Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation. Genome Res. 27, 722–736.

https://github.com/ruanjue/smartdenovo

Walker, B.J., Abeel, T., Shea, T., Priest, M., Abouelliel, A., Sakthikumar, S., Cuomo, C.A., Zeng, Q., Wortman, J., Young, S.K., 2014. Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement. PloS One 9.
ARPIP: Ancestral sequence Reconstruction with insertions and deletions under the Poisson Indel Process
Creators: name: Jowkar, Gholamhossein
name: Pečerska, Jūlija
name: Maiolo, Massimo
name: Gil, Manuel
name: Anisimova, Maria
Publisher: name: Zenodo
Year: 2022
Subjects: joint ancestral sequence reconstruction
maximum likelihood ancestral reconstruction
indel
Dynamic programming
Poisson indel Process
SARS-CoV
coronaviridae
ancestral sequences
evolutionary stochastic process

description: Modern phylogenetic methods allow inference of ancestral molecular sequences given an alignment and phylogeny relating present day sequences. This provides insight into the evolutionary history of molecules, helping to understand gene function and to study biological processes such as adaptation and convergent evolution across a variety of applications. Here we propose a dynamic programming algorithm for fast joint likelihood-based reconstruction of ancestral sequences under the Poisson Indel Process (PIP). Unlike previous approaches, our method, named ARPIP, enables the reconstruction with insertions and deletions based on an explicit indel model. Consequently, inferred indel events have an explicit biological interpretation. Likelihood computation is achieved in linear time with respect to the number of sequences. Our method consists of two steps, namely finding the most probable indel points and reconstructing ancestral sequences. First, we find the most likely indel points and prune the phylogeny to reflect the insertion and deletion events per site. Second, we infer the ancestral states on the pruned subtree in a manner similar to FastML. We applied ARPIP on simulated datasets and on real data from the Betacoronavirus genus. ARPIP reconstructs both the indel events and substitutions with a high degree of accuracy. Our method fares well when compared to established state-of-the-art methods such as FastML and PAML. Moreover, the method can be extended to explore both optimal and suboptimal reconstructions, include rate heterogeneity through time and more. We believe it will expand the range of novel applications of ancestral sequence reconstruction.
description: Funding provided by: Swiss National Science Foundation
Crossref Funder Registry ID: http://dx.doi.org/10.13039/501100001711
Award Number: 31003A_176316 to M.A
Hybrid genome assemblies Illumina/Nanopore of eleven Saccharomyces cerevisiae strains
Creators: name: Campanaro, Stefano
Publisher: name: figshare
Year: 2023
Subjects: Medical biotechnology not elsewhere classified
Bioinformatics and computational biology not elsewhere classified
Ecological physiology
Evolutionary biology not elsewhere classified
Genetics not elsewhere classified
Genomics
Microbial ecology
Microbial genetics
Microbiology not elsewhere classified
Plant cell and molecular biology
Animal cell and molecular biology
Molecular evolution
Anthropological genetics
Behavioural genetics
Statistical and quantitative genetics

description: If you download these data please refer to the manuscript "Arianna Basile, Fabio De Pascale, Federico Bianca, Alessandro Rossi, Martina Frizzarin, Anna Baldisseri, Paolo Antoniali, Raffaele Lopreiato, Laura Treu, Stefano Campanaro. Genotype-phenotype correlations between variants and winemaking traits across nearly 500 Saccharomyces cerevisiae strains and hybrid deep sequencing of selected genomes. 2020. (Submitted to Food Microbiology)".
The gDNA of IBSo strains was processed for library preparation at the sequencing facility of CRIBI Biotechnology Center (University of Padova, Italy). TruSeq DNA PCR-Free Library Prep Kit and Reagent kit v2 (paired-end) were used and sequenced on a NextSeq 500 platform (Illumina Inc., San Diego CA). Eleven selected IBSo strains were also sequenced using long reads; libraries were prepared using the SQK-RBK004 rapid sequencing kit and sequenced using a FLO-MIN106 R9 flow cell on a MinION device (Oxford Nanopore Technologies, Oxford, UK). Long reads (Nanopore) were corrected with Canu software (Koren et al., 2017) and assembled with SMARTdenovo (Ruan, 2019); resulting contigs were polished with Pilon software (Walker et al., 2014) using short reads (Illumina) and ordered following S. cerevisiae S288C reference genome using Mauve software (Darling et al., 2010).
Koren, S., Walenz, B.P., Berlin, K., Miller, J.R., Bergman, N.H., Phillippy, A.M., 2017. Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation. Genome Res. 27, 722–736.

https://github.com/ruanjue/smartdenovo

Walker, B.J., Abeel, T., Shea, T., Priest, M., Abouelliel, A., Sakthikumar, S., Cuomo, C.A., Zeng, Q., Wortman, J., Young, S.K., 2014. Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement. PloS One 9.
In, out & shake it all about - Ingesting and disseminating OA books through OAPEN and DOAB
Creators: name: Snijder, Ronald
Publisher: name: Zenodo
Year: 2022
Subjects: Open Access
Books
Academic publishing

description: The OAPEN Library and the Directory of Open Access Books are infrastructures to disseminate OA books as efficient as possible. What services do they offer to publishers, and how are the books disseminated? The many different roads from publisher to reader are described, and the important role metadata conversion plays in this process.
Additional file 1 of In silico methods for predicting functional synonymous variants
Creators: name: Lin, Brian C.
name: Katneni, Upendra
name: Jankowska, Katarzyna I.
name: Meyer, Douglas
name: Kimchi-Sarfaty, Chava
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1. Review history.
Codes replicating results from Regolith Boundary Layer (ReBL) model
Creators: name: Cui, Alex
name: Parvathy Prem
Publisher: name: Zenodo
Year: 2023

description: The folder 'code' contains codes replicating the temperature profiles of ReBL (Regolith Boundary Layer Model) from Cui 2023 (file nesf abstract). Each file corresponds to the local time, in hours (int_20 would be 8 PM). Outputs temperatures in terms of depth, latitude, and local time. Temperature is iterated in 50-micron depth intervals up to approximately .5 meters. Temperature outputs in 15-degree latitude intervals from the equator to 75 degrees. The folder 'interpolation results sample' contains example results from running the 'int_6' code, with each file corresponding to a latitude. 'nesf abstract' and 'NESF poster' are an abstract and poster regarding the codes presented at NESF 2023. Please feel free to contact lead author Alex Cui (alexzhangcui@gmail.com) with any questions.
Additional file 1 of The medieval Mongolian roots of Y-chromosomal lineages from South Kazakhstan
Creators: name: Zhabagin, Maxat
name: Zhaxylyk Sabitov
name: Tarlykov, Pavel
name: Inkar Tazhigulova
name: Zukhra Junissova
name: Yerezhepov, Dauren
name: Rakhmetolla Akilzhanov
name: Zholdybayeva, Elena
name: Lan-Hai Wei
name: Akilzhanova, Ainur
name: Balanovsky, Oleg
name: Balanovska, Elena
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Text S1. Genealogical description of the Senior Zhuz clans.
Genome assemblies of Illumina sequences of 569 Saccharomyces cerevisiae strains
Creators: name: Campanaro, Stefano
Publisher: name: figshare
Year: 2020
Subjects: subject: 70302 Agronomy
subject: FOS: Agriculture, forestry and fisheries
subject: 60102 Bioinformatics
subject: FOS: Computer and information sciences
subject: Biotechnology
subject: Computational Biology
subject: 60203 Ecological Physiology
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Genetics
subject: 60408 Genomics
subject: 60504 Microbial Ecology
subject: 60503 Microbial Genetics
subject: Molecular Biology
subject: 60409 Molecular Evolution

description: The gDNA of IBSo strains was processed for library preparation at the sequencing facility of CRIBI Biotechnology Center (University of Padova, Italy). TruSeq DNA PCR-Free Library Prep Kit and Reagent kit v2 (paired-end) were used and sequenced on a NextSeq 500 platform (Illumina Inc., San Diego CA).
Some of the assemblies were obtained using Illumina sequences reported in the following papers:Peter, J., De Chiara, M., Friedrich, A., Yue, J.-X., Pflieger, D., Bergström, A., Sigwalt, A., Barre, B., Freel, K., Llored, A., 2018. Genome evolution across 1,011 Saccharomyces cerevisiae isolates. Nature 556, 339–344.
Borneman, A.R., Desany, B.A., Riches, D., Affourtit, J.P., Forgan, A.H., Pretorius, I.S., Egholm, M., Chambers, P.J., 2011. Whole-genome comparison reveals novel genetic elements that characterize the genome of industrial strains of Saccharomyces cerevisiae. PLoS Genet. 7.
Borneman, A.R., Forgan, A.H., Kolouchova, R., Fraser, J.A., Schmidt, S.A., 2016. Whole genome comparison reveals high levels of inbreeding and strain redundancy across the spectrum of commercial wine strains of Saccharomyces cerevisiae. G3 Genes Genomes Genet. 6, 957–971.
Additional file 2 of Genomic hallmarks and therapeutic implications of G0 cell cycle arrest in cancer
Creators: name: Wiecek, Anna J.
name: Cutty, Stephen J.
name: Kornai, Daniel
name: Parreno-Centeno, Mario
name: Gourmet, Lucie E.
name: Tagliazucchi, Guidantonio Malagoli
name: Jacobson, Daniel H.
name: Zhang, Ping
name: Xiong, Lingyun
name: Bond, Gareth L.
name: Barr, Alexis R.
name: Secrier, Maria
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2: Fig. S1. G0 arrest score evaluation and validation. Fig. S2. Expression and genomic patterns of G0 arrest in tumours. Fig. S3. Modelling and validating a pan-cancer classifier of G0 arrest. Fig. S4. Genomic landscape of G0 arrest in breast cancer. Fig. S5. CEP89 expression is associated with G0 arrest and has prognostic value. Fig. S6. Stress response programme validation and links with p53 status. Fig. S7. Relevance of G0 arrest to clinical outcome in cancer. Fig. S8. G0 arrest signatures of drug tolerance in single cell data. Fig. S9. G0 arrest dynamics upon various treatment modalities. Fig. S10. G0 arrest levels in patient samples compared between responders and non-responders to various cancer treatments. Fig. S11. Application of the reduced G0 arrest signature to scRNA-seq data.
Performance study of the effective gain of the double phase liquid Argon LEM Time Projection Chamber
Creators: name: Cantini, C.
name: Epprecht, L.
name: Gendotti, A.
name: Horikawa, S.
name: Periale, L.
name: Murphy, S.
name: Natterer, G.
name: Regenfus, C.
name: Resnati, F.
name: Sergiampietri, F.
name: Rubbia, A.
name: Viant, T.
name: Wu, S.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: FOS: Physical sciences

description: The Large Electron Multipliers (LEMs) are key components of double phase liquid argon TPCs. The drifting charges after being extracted from the liquid are amplified in the LEM positioned half a centimeter above the liquid in pure argon vapor at 87 K. The LEM is characterised by the size of its dielectric rim around the holes, the thickness of the LEM insulator, the diameter of the holes as well as their geometrical layout. The impact of those design parameters on the amplification were checked by testing seven different LEMs with an active area of 10$\times$10 cm$^2$ in a double phase liquid argon TPC of 21 cm drift. We studied their response in terms of maximal reachable gain and impact on the collected charge uniformity as well as the long term stability of the gain. We show that we could reach maximal gains of around 150 which corresponds to a signal-to-noise ratio ($S/N$) of about 800 for a minimal ionising particle (MIP) signal on 3 mm readout strips. We could also conclude that the dielectric surfaces in the vicinity of the LEM holes charge up with different time constants that depend on their design parameters. Our results demonstrate that the LAr LEM TPC is a robust concept that is well-understood and well-suited for operation in ultra-pure cryogenic environments and that can match the goals of future large-scale liquid argon detectors.
description: 17 pages, 9 figures
Low-level otoacoustic emissions may predict susceptibility to noise-induced hearing loss.
Creators: name: Miller, Judi A. Lapsley
name: Marshall, Lynne
name: Heller, Laurie M.
name: Hughes, Linda M.
Publisher: name: Figshare
Year: 2018
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: In a longitudinal study with 338 volunteers, audiometric thresholds and otoacoustic emissions were measured before and after 6 months of noise exposure on an aircraft carrier. While the average amplitudes of the otoacoustic emissions decreased significantly, the average audiometric thresholds did not change. Furthermore, there were no significant correlations between changes in audiometric thresholds and changes in otoacoustic emissions. Changes in transient-evoked otoacoustic emissions and distortion-product otoacoustic emissions were moderately correlated. Eighteen ears acquired permanent audiometric threshold shifts. Only one-third of those ears showed significant otoacoustic emission shifts that mirrored their permanent threshold shifts. A Bayesian analysis indicated that permanent threshold shift status following a deployment was predicted by baseline low-level or absent otoacoustic emissions. The best predictor was transient-evoked otoacoustic emission amplitude in the 4-kHz half-octave frequency band, with risk increasing more than sixfold from approximately 3% to 20% as the emission amplitude decreased. It is possible that the otoacoustic emissions indicated noise-induced changes in the inner ear, undetected by audiometric tests. Otoacoustic emissions may therefore be a diagnostic predictor for noise-induced-hearing-loss risk.
Genome assemblies of Illumina sequences for 569 Saccharomyces cerevisiae strains
Creators: name: Campanaro, Stefano
Publisher: name: figshare
Year: 2023
Subjects: Agronomy
Bioinformatics and computational biology not elsewhere classified
Medical biotechnology not elsewhere classified
Ecological physiology
Evolutionary biology not elsewhere classified
Genetics not elsewhere classified
Genomics
Microbial ecology
Microbial genetics
Plant cell and molecular biology
Animal cell and molecular biology
Molecular evolution

description: If you download these data please refer to the manuscript "Arianna Basile, Fabio De Pascale, Federico Bianca, Alessandro Rossi, Martina Frizzarin, Anna Baldisseri, Paolo Antoniali, Raffaele Lopreiato, Laura Treu, Stefano Campanaro. Genotype-phenotype correlations between variants and winemaking traits across nearly 500 Saccharomyces cerevisiae strains and hybrid deep sequencing of selected genomes. 2020. (Submitted to Food Microbiology)".
The gDNA of IBSo strains was processed for library preparation at the sequencing facility of CRIBI Biotechnology Center (University of Padova, Italy). TruSeq DNA PCR-Free Library Prep Kit and Reagent kit v2 (paired-end) were used and sequenced on a NextSeq 500 platform (Illumina Inc., San Diego CA).
Some of the assemblies were obtained using Illumina sequences reported in the following papers:Peter, J., De Chiara, M., Friedrich, A., Yue, J.-X., Pflieger, D., Bergström, A., Sigwalt, A., Barre, B., Freel, K., Llored, A., 2018. Genome evolution across 1,011 Saccharomyces cerevisiae isolates. Nature 556, 339–344.
Borneman, A.R., Desany, B.A., Riches, D., Affourtit, J.P., Forgan, A.H., Pretorius, I.S., Egholm, M., Chambers, P.J., 2011. Whole-genome comparison reveals novel genetic elements that characterize the genome of industrial strains of Saccharomyces cerevisiae. PLoS Genet. 7.
Borneman, A.R., Forgan, A.H., Kolouchova, R., Fraser, J.A., Schmidt, S.A., 2016. Whole genome comparison reveals high levels of inbreeding and strain redundancy across the spectrum of commercial wine strains of Saccharomyces cerevisiae. G3 Genes Genomes Genet. 6, 957–971.
Ultrafast magneto-photocurrents in GaAs: Separation of surface and bulk contributions
Creators: name: Schmidt, Christian B.
name: Priyadarshi, Shekhar
name: Tarasenko, Sergey A.
name: Bieler, Mark
Publisher: name: arXiv
Year: 2015
Subjects: subject: Optics (physics.optics)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We induce ultrafast magneto-photocurrents in a GaAs crystal employing interband excitation with femtosecond laser pulses at room temperature and non-invasively separate surface and bulk contributions to the overall current response. The separation between the different symmetry contributions is achieved by measuring the simultaneously emitted terahertz radiation for different sample orientations. Excitation intensity and photon energy dependences of the magneto-photocurrents for linearly and circularly polarized excitations reveal an involvement of different microscopic origins, one of which we believe is the inverse Spin-Hall effect. Our experiments are important for a better understanding of the complex momentum-space carrier dynamics in magnetic fields.
Additional file 3 of Genomic hallmarks and therapeutic implications of G0 cell cycle arrest in cancer
Creators: name: Wiecek, Anna J.
name: Cutty, Stephen J.
name: Kornai, Daniel
name: Parreno-Centeno, Mario
name: Gourmet, Lucie E.
name: Tagliazucchi, Guidantonio Malagoli
name: Jacobson, Daniel H.
name: Zhang, Ping
name: Xiong, Lingyun
name: Bond, Gareth L.
name: Barr, Alexis R.
name: Secrier, Maria
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3. Review history.
Locating object knowledge in the brain: comment on Bowers's (2009) attempt to revive the grandmother cell hypothesis.
Creators: name: Plaut, David
name: McClelland, James L
Publisher: name: Figshare
Year: 2018
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: According to Bowers, the finding that there are neurons with highly selective responses to familiar stimuli supports theories positing localist representations over approaches positing the type of distributed representations typically found in parallel distributed processing (PDP) models. However, his conclusions derive from an overly narrow view of the range of possible distributed representations and of the role that PDP models can play in exploring their properties. Although it is true that current distributed theories face challenges in accounting for both neural and behavioral data, the proposed localist account--to the extent that it is articulated at all--runs into more fundamental difficulties. Central to these difficulties is the problem of specifying the set of entities a localist unit represents.
Optical integration of a real-valued function by measurement of a Stokes Parameter
Creators: name: Lemos, Gabriela Barreto
name: Ribeiro, Paulo Henrique Souto
name: Walborn, Stephen
Publisher: name: arXiv
Year: 2014
Subjects: subject: Optics (physics.optics)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We experimentally implement an optical algorithm for integration of a real-valued bivariate func- tion. A user-defined function is encoded in the position-dependent phase of one of the polarization components of an optical beam. The integral of this function is retrieved by measuring a Stokes parameter of the polarization. We analyze the performance of the system as an integration device.
Additional file 1 of Prevention of post-cardiac surgery vitamin D deficiency in children with congenital heart disease: a pilot feasibility dose evaluation randomized controlled trial
Creators: name: McNally, James Dayre
name: O’Hearn, Katie
name: Fergusson, Dean A.
name: Lougheed, Jane
name: Doherty, Dermot R.
name: Gyaandeo Maharajh
name: Weiler, Hope
name: Glenville Jones
name: Khamessan, Ali
name: Redpath, Stephanie
name: Geier, Pavel
name: Lauralyn McIntyre
name: Lawson, Margaret L.
name: Girolamo, Tara
name: Menon, Kusum
Publisher: name: figshare
Year: 2020
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: 60506 Virology
subject: FOS: Biological sciences

description: Additional file 1. CONSORT checklist. CONSORT 2010 checklist of information to include when reporting a pilot or feasibility trial.
Make the first move: how infants learn about self-propelled objects.
Creators: name: Rakison, David
Publisher: name: Figshare
Year: 2018
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: In 3 experiments, the author investigated 16- to 20-month-old infants' attention to dynamic and static parts in learning about self-propelled objects. In Experiment 1, infants were habituated to simple noncausal events in which a geometric figure with a single moving part started to move without physical contact from an identical geometric figure that possessed a single static part. Infants were then tested with an event in which the parts of the objects were switched. In Experiments 2 and 3, infants were habituated and tested with identical events except that the part possessed by each object during habitation was switched relative to the first experiment. Results of the experiments revealed that 16-month-olds failed to encode the relation between an object's part and its onset of motion, 18-month-olds were unconstrained in the relations involving self-propulsion that they would encode, and 20-month-olds were constrained in the relations they would encode. The results are discussed with regard to the developmental trajectory of learning about motion properties and the mechanism involved in early concept acquisition.
Academic Emergency Departments: Mending the Holes in the United States Health Care Safety Net
Creators: name: Hinds, Teri Lynn
Publisher: name: Unknown
Year: 2002

description: As managed care and increasing health care costs continue to squeeze hospitals’ bottom lines, the institutions charged with maintaining the safety net of our health care industry are beginning to show signs of wear. Nonfunded mandates, an increase in the number of uninsured, and crowded emergency rooms are only part of the problem facing our nation’s emergency departments as they struggle to find balance between costs and quality of care. While additional funding may be one answer, an argument for improved delivery of social services is also presented.
Charged charmonium-like structures and the initial single chiral particle emission mechanism
Creators: name: Chen, Dian-Yong
name: Liu, Xiang
name: Matsuki, Takayuki
Publisher: name: arXiv
Year: 2015
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: This paper summarizes what we have done so far to explain charged charmonium/bottomonium-like structures using a hadronic triangle diagram which we call the initial single chiral particle emission mechanism. We discuss processes like $A\to A'+P+P'$ in which two chiral particles $P$ and $P'$ are emitted from $A$. In the intermediate we consider a hadronic one-loop diagram in which $D^{(*)}/D_s^{(*)}/B^{(*)}/B_s^{(*)}$ are included to explain some enhancements experimentally observed. Using this mechanism we explain some of the exotic enhancements and predict a couple of enhancement structures.
description: 4 pages, 1 table, conference paper of XIth Quark Connfinement and the Hadron Spectrum held at St. Petersburg, Russia on Sept. 8-12
Additional file 10 of Traumatic hemorrhage and chain of survival
Creators: name: Latif, Rana K.
name: Clifford, Sean P.
name: Baker, Jeffery A.
name: Lenhardt, Rainer
name: Haq, Mohammad Z.
name: Huang, Jiapeng
name: Farah, Ian
name: Businger, Jerrad R.
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Neuroscience
subject: Environmental Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 10: Table S2. Classification of Hemorrhagic Shock.
Theoretical ecology without species
Creators: name: Tikhonov, Mikhail
Publisher: name: arXiv
Year: 2015
Subjects: subject: Populations and Evolution (q-bio.PE)
subject: FOS: Biological sciences

description: Ecosystems are commonly conceptualized as networks of interacting species. However, partitioning natural diversity of organisms into discrete units is notoriously problematic, and mounting experimental evidence raises the intriguing question whether this perspective is appropriate for the microbial world. Here, an alternative formalism is proposed that does not require postulating the existence of species as fundamental ecological variables, and provides a naturally hierarchical description of community dynamics. This formalism allows approaching the "species problem" from the opposite direction. While the classical models treat a world of imperfectly clustered organism types as a perturbation around well-clustered "species", the presented approach allows gradually adding structure to a fully disordered background. The relevance of this theoretical construct for describing highly diverse natural ecosystems is discussed.
description: 10 pages, 6 figures + Supplementary Material; improved and clarified
Additional file 2 of Prevention of post-cardiac surgery vitamin D deficiency in children with congenital heart disease: a pilot feasibility dose evaluation randomized controlled trial
Creators: name: McNally, James Dayre
name: O’Hearn, Katie
name: Fergusson, Dean A.
name: Lougheed, Jane
name: Doherty, Dermot R.
name: Gyaandeo Maharajh
name: Weiler, Hope
name: Glenville Jones
name: Khamessan, Ali
name: Redpath, Stephanie
name: Geier, Pavel
name: Lauralyn McIntyre
name: Lawson, Margaret L.
name: Girolamo, Tara
name: Menon, Kusum
Publisher: name: figshare
Year: 2020
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: 60506 Virology
subject: FOS: Biological sciences

description: Additional file 2. Timing of research sample collection. Detailed schema of the timing of research sample collection in relation to other study and clinical procedures.
Registration of polarimetric images for in vivo skin diagnostics
Creators: name: Jütte, Lennart
name: Sharma, Gaurav
name: Patel, Harshkumar
name: Roth, Bernhard
Publisher: name: Bellingham, Wash. : SPIE
Year: 2022
Subjects: subject: biomedical imaging
subject: dermoscopy
subject: image registration
subject: Mueller matrix
subject: polarimetry
subject: Dewey Decimal Classification::600 | Technik::620 | Ingenieurwissenschaften und Maschinenbau
subject: Dewey Decimal Classification::500 | Naturwissenschaften::530 | Physik
subject: Dewey Decimal Classification::000 | Allgemeines, Wissenschaft::000 | Informatik, Wissen, Systeme::004 | Informatik

description: SIGNIFICANCE: Mueller matrix (MM) polarimetry is a promising tool for the detection of skin cancer. Polarimetric in vivo measurements often suffer from misalignment of the polarimetric images due to motion, which can lead to false results. AIM: We aim to provide an easy-to-implement polarimetric image data registration method to ensure proper image alignment. APPROACH: A feature-based image registration is implemented for an MM polarimeter for phantom and in vivo human skin measurements. RESULTS: We show that the keypoint-based registration of polarimetric images is necessary for in vivo skin polarimetry to ensure reliable results. Further, we deliver an efficient semiautomated method for the registration of polarimetric images. CONCLUSIONS: Image registration for in vivo polarimetry of human skin is required for improved diagnostics and can be efficiently enhanced with a keypoint-based approach.
ConsInstancy: learning instance representations for semi-supervised panoptic segmentation of concrete aggregate particles
Creators: name: Coenen, Max
name: Schack, Tobias
name: Beyer, Dries
name: Heipke, Christian
name: Haist, Michael
Publisher: name: Heidelberg : Springer
Year: 2022
Subjects: subject: Concrete aggregate
subject: ConsInstancy training
subject: Instance representations
subject: Panoptic segmentation
subject: Semi supervision
subject: Dewey Decimal Classification::000 | Allgemeines, Wissenschaft::000 | Informatik, Wissen, Systeme::004 | Informatik

description: We present a semi-supervised method for panoptic segmentation based on ConsInstancy regularisation, a novel strategy for semi-supervised learning. It leverages completely unlabelled data by enforcing consistency between predicted instance representations and semantic segmentations during training in order to improve the segmentation performance. To this end, we also propose new types of instance representations that can be predicted by one simple forward path through a fully convolutional network (FCN), delivering a convenient and simple-to-train framework for panoptic segmentation. More specifically, we propose the prediction of a three-dimensional instance orientation map as intermediate representation and two complementary distance transform maps as final representation, providing unique instance representations for a panoptic segmentation. We test our method on two challenging data sets of both, hardened and fresh concrete, the latter being proposed by the authors in this paper demonstrating the effectiveness of our approach, outperforming the results achieved by state-of-the-art methods for semi-supervised segmentation. In particular, we are able to show that by leveraging completely unlabelled data in our semi-supervised approach the achieved overall accuracy (OA) is increased by up to 5% compared to an entirely supervised training using only labelled data. Furthermore, we exceed the OA achieved by state-of-the-art semi-supervised methods by up to 1.5%.
Additional file 1 of Validation of myocardial infarction diagnosis in patients with congenital heart disease in Sweden
Creators: name: Fedchenko, Maria
name: Mandalenakis, Zacharias
name: Hultsberg-Olsson, Görel
name: Dellborg, Helena
name: Eriksson, Peter
name: Dellborg, Mikael
Publisher: name: figshare
Year: 2020
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Physiology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Hematology

description: Additional file 1. Figure S1: Flow chart of patient selection.
Second-Order Optimality Conditions in Cone-Constrained Vector Optimization with Arbitrary Nondifferentiable Functions
Creators: name: Ivanov, Vsevolod I.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Optimization and Control (math.OC)
subject: FOS: Mathematics
subject: 90C46, 49J52, 90C26, 26B25

description: In this paper, we introduce a new second-order directional derivative and a second-order subdifferential of Hadamard type for an arbitrary nondifferentiable function. We derive several second-order optimality conditions for a local and a global minimum and an isolated local minimum of second-order in unconstrained optimization. In particular, we obtain two types results with generalized convex functions. We also compare our conditions with the results of the recently published paper [Bednavrik, D., Pastor, K.: On second-order conditions in unconstrained optimization. Math. Program. Ser A, {\bf 113}, 283--291 (2008)] and a lot of other works, published in high level journals, and prove that they are particular cases of our necessary and sufficient ones. We prove that the necessary optimality conditions concern more functions than the lower Dini directional derivative, even the optimality conditions with the last derivative can be applied to a function, which does not belong to some special class. At last, we apply our optimality criteria for unconstrained problems to derive necessary and sufficient optimality conditions for the cone-constrained vector problems.
description: 24 pages. arXiv admin note: substantial text overlap with arXiv:1311.2367