cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Characterization of quorum regulatory small RNAs in an emerging pathogen Vibrio fluvialis and their roles toward type VI secretion system VflT6SS2 modulation
Creators: name: Zhang, Anran
name: Xiao, Yue
name: Han, Yu
name: Huang, Yuanming
name: Kan, Biao
name: Liang, Weili
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: The type VI secretion system (T6SS) is essential for Gram-negative bacteria to antagonize a wide variety of prokaryotic and eukaryotic competitors and thus gain survival advantages. Two sets of T6SS have been found in Vibrio fluvialis, namely VflT6SS1 and VflT6SS2, among which VflT6SS2 is functionally expressed. The CqsA/LuxS-HapR quorum sensing (QS) system with CAI-1 and AI-2 as signal molecules can regulate VflT6SS2 by regulators LuxO and HapR, with LuxO repressing while HapR activating VflT6SS2. Quorum regulatory small RNAs (Qrr sRNAs) are Hfq-dependent trans-encoded sRNAs that control Vibrio quorum sensing. In V. fluvialis, Qrr sRNAs have not been characterized and their regulatory function is unknown. In this study, we first identified four Qrr sRNAs in V. fluvialis and demonstrated that these Qrr sRNAs are regulated by LuxO and involved in the modulation of VflT6SS2 function. On the one hand, Qrr sRNAs act on HapR, the activator of both the major and the auxiliary clusters of VflT6SS2, and then indirectly repress VflT6SS2. On the other hand, they directly repress VflT6SS2 by acting on tssB2 and tssD2_a, the first gene of the major cluster and the highly transcriptional one among the two units of the first auxiliary cluster, respectively. Our results give insights into the role of Qrr sRNAs in CAI-1/AI-2 based QS and VflT6SS2 modulation in V. fluvialis and further enhance understandings of the network between QS and T6SS regulation in Vibrio species.
Technical Report: Environmental Dredging and Sediment Decontamination Technology Demonstration Pilot Study:  Magnetometer and Sub-bottom Profiler Debris Study
Creators: name: No Name Supplied
Publisher: name: U.S. Environmental Protection Agency (EPA)
Year: 2004

description: The goal of the debris survey was to identify buried objects that may be hazards to the  dredging operation in the proposed pilot study area. Both sub-bottom and  magnetometer surveys were conducted in an attempt to identify objects buried beneath the  surface of the sediment.  The survey work encompassed the entire river bottom, to the MLW mark along each  shoreline. The survey extended for 1000 feet along the river centerline from bank to bank. None of the targets located were found to have signatures indicative of historically  significant submerged cultural resources. Because all of the materials generating the targets  are buried below the surface of the sediment, it is impossible to positively identify them  using remote sensing equipment. Whether the targets identified are a concern for the future  dredging operations cannot be determined. Should the potential exist for the dredging  equipment to be damaged by the targets, further investigation may be necessary to  determine the nature and depth of burial of the material generating the anomaly.
Holocranaus longipes Roewer 1913
Creators: name: Pinto-Da-Rocha, Ricardo
name: Bonaldo, Alexandre B.
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Opiliones
Cranaidae
Holocranaus
Holocranaus longipes

description: Holocranaus longipes Roewer, 1913
Holocranaus longipes Roewer, 1913: 400; Kury 2003: 93. (male holotype and female paratype “SMF-1456/66, Rio Aguacatal, W. Cord., Colombia, 2000 m, coll. Fassl” examined)
Phareicranaus giganteus Roewer, 1932: 299; Kury 2003: 96 (two females syntypes, said to be male and female in original description “SMF- 1442-53, Chile, Chillan” examined) Syn. n.
Note. Types of both species coincide perfectly in external morphology. The type locality of P. giganteus is odd, perhaps a mislabeling, according to Kury (2003: 93).
description: Published as part of Pinto-Da-Rocha, Ricardo & Bonaldo, Alexandre B., 2011, Species relationships in the Neotropical genus Phareicranaus Roewer 1913 (Opiliones: Cranaidae): two new species and new data from Penial morphology, pp. 1-34 in Zootaxa 3135 on page 27, DOI: 10.5281/zenodo.207840
Additional file 10: of Assessment of genetic diversity and yield performance in Jordanian barley (Hordeum vulgare L.) landraces grown under Rainfed conditions
Creators: name: A. Al-Abdallat
name: A. Karadsheh
name: N. Hadadd
name: M. Akash
name: S. Ceccarelli
name: M. Baum
name: M. Hasan
name: A. Jighly
name: J. Abu Elenein
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: QQ plots for all tested triats in this study. (PDF 360Â kb)
Lower Passaic River Restoration Project: Final Modeling Work Plan
Creators: name: No Name Supplied
Publisher: name: U.S. Environmental Protection Agency (EPA)
Year: 2006

description: The Lower Passaic River Restoration Project is being  implemented jointly under the Comprehensive Environmental Response Compensation and  Liability Act and Water Resources Development Act.  HydroQual's part of the Project is the  development and application of a suite of mathematical models (i.e., hydrodynamic, sediment  transport, chemical fate and transport, bioaccumulation) of the Lower Passaic River to determine  the relative significance of contaminant sources to water, sediments, and biota and to evaluate the  effects of various remedial strategies on reducing environmental exposure end points, which in turn  affect human health and ecological risks.  It is anticipated that the main issues for the Passaic River will  include the restoration of water quality, sediments and watershed drainage areas, and possibly nearby  wetlands in the upper Newark Bay; the protection of river biota from contact with concentrations of  multiple chemicals in the river sediments to help restore aquatic habitat; and the reduction and  control of pollutants now entering the river from storm water runoff, outfalls, and atmospheric  deposition to assist with restoration and to maintain the restored habitat. The modeling plan presented in subsequent sections describes i) the basis for selecting the  models to be used to meet the above goals and objectives, ii) the modeling framework per se, iii) the  data needs, and iv) the road map towards calibrating and validating the models.
Lower Passaic River Restoration Project: Draft Hydrodynamic Modeling Report
Creators: name: No Name Supplied
Publisher: name: U.S. Environmental Protection Agency (EPA)
Year: 2006

description: This report presents the development, calibration, and validation of the first component of the  integrated mathematical model of the Lower Passaic River - the hydrodynamic model. Hydrodynamic model calculations will first be performed to determine intra-tidal transport  and bottom shear stresses throughout the model domain. This information will be passed forward  to a sediment transport/organic carbon cycling model to determine the movement of inorganic  particles and organic carbon between the overlying water and the bed. Information from the  hydrodynamic and sediment transport/organic carbon cycling models will be passed forward to a  chemical fate and transport model, and will be used along with descriptions of contaminant  partitioning to organic carbon and other contaminant processes (e.g., volatilization, degradation,  etc.) to determine contaminant concentrations in the overlying water and sediment. Finally, contaminant concentrations in the water column and sediment will be used in bioaccumulation and  toxicity calculations.
Cerceris rufocincta Gerstaecker 1858
Creators: name: Gadallah, Neveen S.
name: Abu El-Ghiet, Usama M.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Crabronidae
Cerceris
Cerceris rufocincta

description: Cerceris rufocincta Gerstaecker, 1858
Distribution in Jazan and collecting period: Abu Arish (January, March) (Guichard, 1993).
description: Published as part of Gadallah, Neveen S. & Abu El-Ghiet, Usama M., 2024, Sphecidae sensu lato (Hymenoptera: Apoidea) of the Jazan Province, south-west of Saudi Arabia, with the description of two new species, pp. 71-95 in Zootaxa 5492 (1) on page 90, DOI: 10.11646/zootaxa.5492.1.4, http://zenodo.org/record/13212094
Lower Passaic River Restoration Project: Pathways Analysis Report
Creators: name: No Name Supplied
Publisher: name: U.S. Environmental Protection Agency (EPA)
Year: 2005

description: The Lower Passaic River Restoration Project (LPRRP) is an integrated joint effort among several state  and federal agencies to conduct a comprehensive study of a 17 mile stretch of the Lower Passaic River.  A baseline risk assessment will be performed as  part of the study to assess current and future health risks to human receptors and the environment in the  absence of any remedial actions. Results of the study and risk assessments will be used to make a series  of site-specific risk management decisions during the remedy-selection process (EPA, 1997a).  As a preliminary step of the Human Health and Ecological Risk Assessment (HHERA), Battelle, under  contract to Malcolm Pirnie, has prepared this Pathways Analysis Report (PAR). This document serves as  a preliminary planning document that evaluates the potential impacts of exposure to contaminants from  sediment, water, and biota on humans and wildlife in the lower 17 miles of the Passaic River. Using  historical data from the Passaic River, an assessment of the  temporal and spatial data gaps has been conducted as part of this initial screening step.    The PAR has been prepared to outline the  exposure pathways and assumptions for both the human health and ecological risk assessments.
Lower Passaic River Restoration Project & Newark Bay Study: Public Forums
Creators: name: No Name Supplied
Publisher: name: Lower Passaic River Restoration Project & Newark Bay Study
Year: 2005

description: The materials were presented at public forums and were designed to provide information about the Lower Passaic River  Restoration Project &  Newark Bay Study and project's goals and to discuss sampling work, the dredging pilot study, and the Draft Community Involvement Plan.
Additional file 1: Table S1. of Hypotonia and intellectual disability without dysmorphic features in a patient with PIGN-related disease
Creators: name: Thiffault, Isabelle
name: Zuccarelli, Britton
name: Welsh, Holly
name: Yuan, Xuan
name: Farrow, Emily
name: Zellmer, Lee
name: Miller, Neil
name: Soden, Sarah
name: Abdelmoity, Ahmed
name: Brodsky, Robert
name: Saunders, Carol
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology

description: Characteristic of variants reported in patient CMH1157. (DOCX 34Â kb)
Pison atrum
Creators: name: Gadallah, Neveen S.
name: Abu El-Ghiet, Usama M.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Crabronidae
Pison
Pison atrum

description: Pison atrum (Spinola, 1808)
New material examined: 1♀, 1♂, Abu Arish, 16–23.iii.2023, Malaise trap on Mangifera indica, Usama Abu El-Ghiet collector.
Distribution in Jazan and collecting period: Abu Arish on Mangifera indica (March) (present study), Haffadhiyah on Jasminum sambac (December) (Gadallah et al., 2021).
description: Published as part of Gadallah, Neveen S. & Abu El-Ghiet, Usama M., 2024, Sphecidae sensu lato (Hymenoptera: Apoidea) of the Jazan Province, south-west of Saudi Arabia, with the description of two new species, pp. 71-95 in Zootaxa 5492 (1) on page 89, DOI: 10.11646/zootaxa.5492.1.4, http://zenodo.org/record/13212094
Brachylaima fuscata
Creators: name: Shakarbaev, U. A.
name: Akramova, F. D.
name: Azimov, D. A.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Diplostomida
Brachylaimidae
Brachylaima
Brachylaima fuscata

description: Brachylaima fuscata (Rudolphi, 1819)
Intermediate host: Oxyloma elegans, Deroceras sturanui, Macrochamys sogdiana (Gastropoda: Succineidae, Agriolimacidae, Ariophantidae).
Cercarial morphotype group: cercariaeum.
Habitat: terrestrial.
Definitive hosts: birds.
Localities: northeastern and southern regions.
References: Davronov (1999), Shakarboyev et al. (2012).
description: Published as part of Shakarbaev, U. A., Akramova, F. D. & Azimov, D. A., 2020, The Taxonomic Survey Of The Cercarial Fauna (Platyhelminthes, Trematoda) In The Mollusks Of Uzbekistan, pp. 505-522 in Zoodiversity 54 (6) on pages 507-508, DOI: 10.15407/zoo2020.06.505, http://zenodo.org/record/6377780
title: Non-Bank Dealing and Liquidity Bifurcation in Fixed-Income Markets
Creators: name: Brolley, Michael
name: Cimon, David
Publisher: name: Bank of Canada
Year: 2025

description: Non-bank financial institutions, such as principal-trading firms and hedge funds, increasingly compete with bank-owned dealers in fixed-income markets. Some market participants worry that if non-bank financial institutions push out established bank dealers, liquidity will become unreliable during times of stress. We model non-bank entry and state-dependent liquidity provision. Non-bank participants improve liquidity more during normal times than in stress, leading to a bifurcation of liquidity. In the cross-section, their entry improves liquidity for large and previously unserved small clients; however, banks may no longer provide reliable liquidity to marginal clients. Central bank lending may limit harmful bifurcation during times of stress if that lending is predictable and at sufficiently favourable terms.
description: Les institutions financières non bancaires, comme les sociétés de négociation pour compte propre et les fonds de couverture, rivalisent de plus en plus avec les courtiers affiliés aux banques sur les marchés de titres à revenu fixe. Certains participants aux marchés craignent que, si les institutions financières non bancaires repoussent les courtiers affiliés aux banques, la liquidité devienne incertaine en période de tensions. Nous modélisons l’entrée des institutions non bancaires sur ces marchés et l’octroi de liquidités en fonction de la conjoncture. Les participants non bancaires améliorent davantage la liquidité en temps normal qu’en période de turbulences, ce qui crée une disparité entre les niveaux de liquidité. Dans l’échantillon représentatif des investisseurs, l’entrée des participants non bancaires améliore la liquidité pour les clients importants et les petits clients qui n’étaient pas servis auparavant. Toutefois, les banques pourraient ne plus fournir de liquidités fiables aux clients marginaux. Les prêts consentis par les banques centrales pourraient limiter cette disparité nuisible en période de tensions si l’octroi de prêts est prévisible et les conditions d’emprunt assez favorables.
New Jersey's Farmland Assessment Act: An Informational Guide on Basic Requirements
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Agriculture
Year: 2006

description: The information provided in this document is is intended to help landowners understand the basic requirements of the Farmland Assessment Act.  The New Jersey Farmland Assessment Act of 1964 permits farmland and woodland actively devoted to an agricultural or horticultural use to be assessed at its productivity value.  When and if the land qualified under the Act changes to a non-agricultural or non-horticultural use, it is subject to a rollback tax.
Additional file 1: of Methodological quality and transparency of clinical practice guidelines for the pharmacological treatment of non-communicable diseases using the AGREE II instrument: a systematic review protocol
Creators: name: Molino, Caroline
name: Ribeiro, Eliane
name: Romano-Lieber, Nicolina
name: Airton Stein
name: Melo, Daniela
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Preferred reporting items for systematic review and meta-analysis protocols 2015 statement (PRISMA-P checklist): required components to report in a systematic review protocol. (PDF 343Â kb)
Carinostigmus levifrons
Creators: name: Gadallah, Neveen S.
name: Abu El-Ghiet, Usama M.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Crabronidae
Carinostigmus
Carinostigmus levifrons

description: Carinostigmus levifrons (Arnold, 1947)
Distribution in Jazan and collecting period: Fayfa on Coffea arabica (July) (Gadallah et al., 2024).
description: Published as part of Gadallah, Neveen S. & Abu El-Ghiet, Usama M., 2024, Sphecidae sensu lato (Hymenoptera: Apoidea) of the Jazan Province, south-west of Saudi Arabia, with the description of two new species, pp. 71-95 in Zootaxa 5492 (1) on page 89, DOI: 10.11646/zootaxa.5492.1.4, http://zenodo.org/record/13212094
Brachylaima undetermined
Creators: name: Shakarbaev, U. A.
name: Akramova, F. D.
name: Azimov, D. A.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Diplostomida
Brachylaimidae
Brachylaima
Brachylaima undetermined

description: Brachylaima sp.
Intermediate host: Xeropicta candaharica (Gastropoda: Hygromiidae).
Cercarial morphotype group: cercariaeum.
Habitat: terrestrial.
Definitive hosts: birds.
Localities: Fergana Valley, northeastern part.
References: Tukhmanyants, Shakhurina (1971), Shakarboyev et al. (2012).
description: Published as part of Shakarbaev, U. A., Akramova, F. D. & Azimov, D. A., 2020, The Taxonomic Survey Of The Cercarial Fauna (Platyhelminthes, Trematoda) In The Mollusks Of Uzbekistan, pp. 505-522 in Zoodiversity 54 (6) on page 508, DOI: 10.15407/zoo2020.06.505, http://zenodo.org/record/6377780
Surface Water Quality Standards, N. J. A. C. 7:9B, Last Amended June 2008, 40 N.J.R. 3630(b)
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection, Water Monitoring and Standards
Year: 2008

description: This document is an amendment to Surface Water Quality Standards, Subchapter of the New Jersey Administrative Code N. J. A. C. 7:9B.  This document outlines the rules of the Department of Environmental Protection governing matters of policy with respect to the protection and enhancement of surface water resources in the state, including (1) class definitions and quality criteria, (2) use designation and quality criteria for the mainstem of the Delaware River, including the Delaware Bay, (3) the classification of surface waters of the State, (4) procedures for establishing water quality-based effluent limitations, (5) modification of water quality-based effluent limitations, (6) procedures for reclassifying specific segments for less restrictive uses, and (7) procedures for reclassifying specific segments for more restrictive uses pursuant to the New Jersey Water Pollution Control Act and the Water Quality Planning Act.
New Jersey Surface Water Quality Standards: Antidegradation Designations
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection, Water Monitoring and Standards
Year: 2008

description: The Surface Water Quality Standards (SWQS)  establish antidegradation policies for all surface waters of the State at N.J.A.C. 7:9B. The SWQS require that all existing and  designated uses shall be maintained and protected for all  surface waters of the State. Impaired waters must be restored  to meet SWQS. Existing water quality shall be maintained. This document describes the  three tiers of antidegradation designations, and provides additional information about the category 1 designation. Category One (C1) designation provides additional protection  to waterbodies that help prevent water quality degradation and  discourage development where it would impair or destroy natural  resources and water quality.
New Jersey Surface Water Quality Standards: Category One Buffers
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Environmental Protection, Water Monitoring and Standards
Year: 2008

description: This fact sheet provides information on buffers to Category One designated waters.  Buffers are vegetated areas adjacent to waterways that provide  protection to New Jersey's water quality. These special areas are  established and protected through various rules and may vary in width.  A 300 foot or Category One (C1) buffer is required by the Stormwater  Management (NJAC 7:8) and the Flood Hazard Area Control Act rules  (FHACA) at NJAC 7:13, for certain activities proposed adjacent to  waters designated in the Surface Water Quality Standards (NJAC 7:9B)  as C1 or their upstream tributaries in the same sub-watershed (HUC  14).
Genome-wide Expanding of Genetic Evolution and Potential Pathogenicity in Vibrio alginolyticus
Creators: name: Huang, Zhenzhou
name: Li, Yanjun
name: Yu, Keyi
name: Ma, Lizhi
name: Pang, Bo
name: Qin, Qin
name: Li, Jie
name: Wang, Duochun
name: Gao, He
name: Kan, Biao
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Pharmacology
subject: Biotechnology
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Vibrio alginolyticus, an emergent species of Vibrio genus, exists in aquatic and marine environments. It has undergone genetic diversification, but its detailed genomic diversity is still unclear. Here, we performed a multi-dimensional comparative genomic analysis to explore the population phylogeny, virulence-related genes and potential drug resistance genes of 184 V. alginolyticus isolates. Although genetic diversity is complex, we analyzed the population structure using three sub-datasets, including the subdivision for three lineages into sublineages and the distribution of strains in the marine ecological niche. Accessory genes, most of which reclassified V. alginolyticus genomes as different but with relatively close affinities, were nonuniformly distributed among these isolates. We demonstrated that the spread of some post-evolutionary isolates (mainly L3 strains isolated from Chinese territorial seas) was likely to be closely related to human activities, whereas other more ancestral strains (strains in the L1 and L2) tended to be locally endemic and formed clonal complex groups. In terms of pathogenicity, the potential virulence factors were mainly associated with toxin, adherence, motility, chemotaxis, and the type III secretion system (T3SS). We also found five types of antibacterial drug resistance genes. The prevalence of β-lactam resistance genes was 100%, which indicated that there may be a potential risk of natural resistance to β-lactam drugs. Our study reveals insights into genomic characteristics, evolution and potential virulence-associated gene profiles of V. alginolyticus.
Hasstilesia ovis
Creators: name: Shakarbaev, U. A.
name: Akramova, F. D.
name: Azimov, D. A.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Diplostomida
Hasstilesiidae
Hasstilesia
Hasstilesia ovis

description: Hasstilesia ovis (Orloff, Erschoff et Badanin, 1937)
Intermediate host: Pupilla muscorum, Vallonia costata (Gastropoda: Pupillidae, Vallonidae).
Cercarial morphotype group: cercariaeum.
Habitat: terrestrial.
Definitive hosts: mammals.
Locality: Fergana Valley.
References: Gvozdev & Soboleva (1972), Shakarboyev et al. (2012).
description: Published as part of Shakarbaev, U. A., Akramova, F. D. & Azimov, D. A., 2020, The Taxonomic Survey Of The Cercarial Fauna (Platyhelminthes, Trematoda) In The Mollusks Of Uzbekistan, pp. 505-522 in Zoodiversity 54 (6) on page 508, DOI: 10.15407/zoo2020.06.505, http://zenodo.org/record/6377780
Additional file 1: of Methodological quality and transparency of clinical practice guidelines for the pharmacological treatment of non-communicable diseases using the AGREE II instrument: a systematic review protocol
Creators: name: Molino, Caroline
name: Ribeiro, Eliane
name: Romano-Lieber, Nicolina
name: Airton Stein
name: Melo, Daniela
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Preferred reporting items for systematic review and meta-analysis protocols 2015 statement (PRISMA-P checklist): required components to report in a systematic review protocol. (PDF 343Â kb)
Bucephalus polymorphus Baer 1827
Creators: name: Shakarbaev, U. A.
name: Akramova, F. D.
name: Azimov, D. A.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Plagiorchiida
Bucephalidae
Bucephalus
Bucephalus polymorphus

description: Bucephalus polymorphus Baer, 1827
Intermediate host: Anodonta cygnea (Bivalvia: Unionidae).
Cercarial morphotype group: gasterostome.
Habitat: freshwater.
Definitive hosts: fish.
Locality: the Syrdarya river.
Reference: Butenko (1967).
description: Published as part of Shakarbaev, U. A., Akramova, F. D. & Azimov, D. A., 2020, The Taxonomic Survey Of The Cercarial Fauna (Platyhelminthes, Trematoda) In The Mollusks Of Uzbekistan, pp. 505-522 in Zoodiversity 54 (6) on page 508, DOI: 10.15407/zoo2020.06.505, http://zenodo.org/record/6377780
Additional file 2: of Methodological quality and transparency of clinical practice guidelines for the pharmacological treatment of non-communicable diseases using the AGREE II instrument: a systematic review protocol
Creators: name: Molino, Caroline
name: Ribeiro, Eliane
name: Romano-Lieber, Nicolina
name: Airton Stein
name: Melo, Daniela
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Sample search: sample search for the database MEDLINE (through PubMed). (PDF 298Â kb)
Faithful giving: exploring the role of religiosity on charitable giving
Creators: name: Pandit, Tanya
Publisher: name: Macquarie University
Year: 2024
Subjects: classificationCode: 350601
subject: Consumer behaviour

description: This study explores the impact of religiosity on charitable giving, with a focus on the mediating role of self-congruence and the moderating effects of religious framing. It examines how alignment between an individual's religious identity and a charity's religious orientation influences donation behavior. Through the lens of self-congruity theory, the research posits that higher levels of personal religious congruence with a charity's identity enhance the likelihood of charitable giving. Additionally, it investigates how religious framing in donation appeals affects giving across different religious demographics, contributing to a nuanced understanding of the dynamics at play in religiously motivated philanthropy.
New Jersey Agriculture: 2006 Annual Report
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Agriculture : National Agricultural Statistics Service, U.S. Department of Agriculture (USDA)
Year: 2007

description: The year 2006 was a year of milestones for New Jersey agriculture, for launching successful new programs and  proactively addressing the issues utmost on the minds of our constituents. There was more food for the hungry  and more nutritious foods available to schoolchildren. More of our farmland was permanently protected and  important partnerships were forged to accomplish our goals. Harsh weather, low dairy prices, gypsy moths and  national issues such as avian influenza preparedness and produce safety impacted producers and state residents. Some major objectives were accomplished in 2006, including:  funding to purchase locally-produced, nutritious food to feed an additional half million of the hungry in  New Jersey was allocated to emergency feeding operations and the process was begun to improve those  operations' infrastructures to improve services; the Farmland Preservation program reached the milestone of 150,000 acres of permanently  preserved farmland.
New Jersey Agriculture: 2005 Annual Report
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Agriculture : National Agricultural Statistics Service, U.S. Department of Agriculture (USDA)
Year: 2006

description: For New Jersey Agriculture, 2005 was a year of extremes, from some of the hottest and driest weather in June, July and August to some of the wettest in September and October. These extremes provided many challenges to our farmers, and some lost yield as a result of the weather. However, the quality of the majority of our state's crops was very good. 2005 is an example of the tenacity of the state's agricultural community and of the New Jersey Department of Agriculture's commitment to keeping the state green and growing.  While there were challenges, there also were many achievements. This report highlights some of the major objective that were accomplished during 2005.
Cerceris sokotrae Kohl 1906
Creators: name: Gadallah, Neveen S.
name: Abu El-Ghiet, Usama M.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Crabronidae
Cerceris
Cerceris sokotrae

description: Cerceris sokotrae Kohl, 1906
Distribution in Jazan and collecting period: Abu Arish (March) (Guichard, 1993).
description: Published as part of Gadallah, Neveen S. & Abu El-Ghiet, Usama M., 2024, Sphecidae sensu lato (Hymenoptera: Apoidea) of the Jazan Province, south-west of Saudi Arabia, with the description of two new species, pp. 71-95 in Zootaxa 5492 (1) on page 90, DOI: 10.11646/zootaxa.5492.1.4, http://zenodo.org/record/13212094
ENTREPRENEURSHIP IN THE CONTEXT OF THE PANCASILA ECONOMY: OPPORTUNITIES AND CHALLENGES FROM AN ISLAMIC PERSPECTIVE
Creators: name: ERNANDIA PANDIKAR
name: DISMAN DISMAN
name: DADANG SUNDAWA
Publisher: name: Zenodo
Year: 2024
Subjects: Entrepreneurship, Pancasila Economy, Islamic Perspective.

description: Abstract

This study explores the role of entrepreneurship in the context of Pancasila economy by integrating Islamic perspective. This study aims to identify the opportunities and challenges faced by entrepreneurs within the framework of Pancasila economy, as well as to evaluate the contribution of Islamic perspective in viewing entrepreneurship. The research method used is descriptive qualitative and literature analysis and data search from various sources related to entrepreneurship, Pancasila economy, and Islamic perspective. The analysis shows that entrepreneurship in the frame of Pancasila economy offers opportunities for sustainable and inclusive economic development, with an emphasis on social justice and gotong royong. However, various challenges such as complex regulations and bureaucracy can hinder the development of entrepreneurship. The Islamic perspective adds value by reinforcing aspects of business ethics and alignment with public welfare. In conclusion, the integration of Pancasila values and Islamic perspectives in entrepreneurship can enrich business practices and generate positive impacts for society as a whole.
Characterization of Quorum regulatory small RNAs in an emerging pathogen Vibrio fluvialis and their roles toward type VI secretion system VflT6SS2 modulation
Creators: name: Zhang, Anran
name: Xiao, Yue
name: Han, Yu
name: Huang, Yuanming
name: Kan, Biao
name: Liang, Weili
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: The type VI secretion system (T6SS) is essential for Gram-negative bacteria to antagonize a wide variety of prokaryotic and eukaryotic competitors and thus gain survival advantages. Two sets of T6SS have been found in Vibrio fluvialis, namely VflT6SS1 and VflT6SS2, among which VflT6SS2 is functionally expressed. The CqsA/LuxS-HapR quorum sensing (QS) system with CAI-1 and AI-2 as signal molecules can regulate VflT6SS2 by regulators LuxO and HapR, with LuxO repressing while HapR activating VflT6SS2. Quorum regulatory small RNAs (Qrr sRNAs) are Hfq-dependent trans-encoded sRNAs that control Vibrio quorum sensing. In V. fluvialis, Qrr sRNAs have not been characterized and their regulatory function were unknown. In this study, we first identified four Qrr sRNAs in V. fluvialis and demonstrated that these Qrr sRNAs are regulated by LuxO and involved in the modulation of VflT6SS2 function. On the one hand, Qrr sRNAs act on HapR, the activator of both the major and the auxiliary clusters of VflT6SS2, and then indirectly repress VflT6SS2. On the other hand, they directly repress VflT6SS2 by acting on tssB2 and tssD2_a, the first gene of the major cluster and the highly transcriptional one among the two units of the first auxiliary cluster, respectively. Our results give insights into the role of Qrr sRNAs in CAI-1/AI-2 based QS and VflT6SS2 modulation in V. fluvialis and further enhance understandings of the network between QS and T6SS regulation in Vibrio species.
An Ecological-Integrity Assessment of the New Jersey Pinelands: A Comprehensive Assessment of the Landscape and Aquatic and Wetland Systems of the Region
Creators: name: No Name Supplied
Publisher: name: New Jersey Pinelands Commission
Year: 2008

description: The Pinelands Comprehensive Management Plan (CMP, Pinelands Commission 1908) was adopted in 1980 following a planning process that began in 1979. What sets the CMP apart from most other land-use regulation and planning programs is that it was based on an ecosystem approach to protecting the natural resources of the New Jersey Pinelands. A major element of the CMP is a land-use-management program that directs development away from areas considered ecologically critical to areas deemed less critical.  Implementation of the CMP over the past three decades has involved more local and site specific approaches. At times, single issues have overshadowed the broader, multifaceted goal of ensuring the long-term preservation of a unique ecosystem. The purpose of this ecological-integrity assessment is to focus on the the big picture again by evaluating the current ecological status of the entire 983,173-acre Pinelands Area and the ecosystem that it represents.
Rhipidocotyle companula
Creators: name: Shakarbaev, U. A.
name: Akramova, F. D.
name: Azimov, D. A.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Plagiorchiida
Bucephalidae
Rhipidocotyle
Rhipidocotyle companula

description: Rhipidocotyle companula (Dujardin, 1845)
Intermediate host: Anodonta piscinalis (Bivalvia: Unionidae).
Cercarial morphotype group: gasterostome.
Habitat: freshwater.
Definitive hosts: fish.
Locality: Republic of Karakalpakstan (the Aral Sea).
Reference: Arystanov (1976).
description: Published as part of Shakarbaev, U. A., Akramova, F. D. & Azimov, D. A., 2020, The Taxonomic Survey Of The Cercarial Fauna (Platyhelminthes, Trematoda) In The Mollusks Of Uzbekistan, pp. 505-522 in Zoodiversity 54 (6) on page 508, DOI: 10.15407/zoo2020.06.505, http://zenodo.org/record/6377780
New Jersey Agriculture: A Record of Accomplishment in Keeping New Jersey Agriculture Green and Growing
Creators: name: No Name Supplied
Publisher: name: New Jersey Department of Agriculture : National Agricultural Statistics Service, U.S. Department of Agriculture (USDA)
Year: 2008

description: The New Jersey Department of Agriculture's diverse programs and services reach a wide array of individuals, businesses and organizations throughout New Jersey. Whether protecting farmland, keeping our family farms viable, ensuring the health and safety of plant and animal resources or annually distributing millions of pounds of food to New Jersey's schoolchildren and neediest citizens, the NJDA's activities directly impact daily life in the Garden State. This report describes Department's major areas of responsibilities and highlights of recent initiatives, and include: agricultural planning, farmland preservation, economic growth, linking agriculture to nutrition, conserving natural resources, food safety, animal protection, and pursuing green energy and related opportunities.
Monitoring the Ecological Integrity of Pinelands Wetlands: Variations in Shallow, Coastal Plain Lake Communities Associated with Land-Use-Degradation Gradients and Thresholds
Creators: name: No Name Supplied
Publisher: name: New Jersey Pinelands Commission
Year: 2007

description: The concept of degradation thresholds has been used to describe the level of urbanization and  associated impervious surface that results in stream impairment. Although the concept is valid in areas dominated by urban-land  use, it fails to account for the effect of agriculture on the ecological integrity of surface waters in  areas with mixed land uses since both urban land and agriculture can result in water-quality  degradation  and associated changes in  the composition of aquatic communities.  New Jersey Pinelands streams are representative of blackwater coastal plain streams found  along the east coast and Gulf Coast of the United States. Urban land and upland  agriculture are generally good predictors of Pinelands stream-water quality when considered  separately, but both land uses must be considered together to more fully describe the relationship  between watershed disturbance and water quality. Pinelands water-quality  and diatom-, macrophyte-, anuran-, and fish-community gradients are associated with variations in  the extent of altered land (combined percentage of urban land and upland agriculture) in a  watershed. The purpose of this  paper is to describe land-use gradients and thresholds associated with changes in water quality and  the composition of diatom-, plant-, fish-, and anuran-assemblages found in Pinelands lakes.
Clinostomum complanatum
Creators: name: Shakarbaev, U. A.
name: Akramova, F. D.
name: Azimov, D. A.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Diplostomida
Clinostomidae
Clinostomum
Clinostomum complanatum

description: Clinostomum complanatum (Rudolphi, 1814)
Intermediate host: Lymnaea stagnalis (Gastropoda: Lymnaeidae).
Cercarial morphotype group: cercariaeum.
Habitat: freshwater.
Definitive hosts: birds.
Locality: Republic of Karakalpakstan.
Reference: Arystanov (1976).
description: Published as part of Shakarbaev, U. A., Akramova, F. D. & Azimov, D. A., 2020, The Taxonomic Survey Of The Cercarial Fauna (Platyhelminthes, Trematoda) In The Mollusks Of Uzbekistan, pp. 505-522 in Zoodiversity 54 (6) on page 508, DOI: 10.15407/zoo2020.06.505, http://zenodo.org/record/6377780
The Barnegat Bay Watershed: A Report to the Pinelands Commission on the Status of Selected Aquatic and Wetland Resources
Creators: name: No Name Supplied
Publisher: name: New Jersey Pinelands Commission
Year: 2006

description: This report on the Barnegat Bay Watershed study area, which includes the Westecunk Creek, Cedar  Creek, Toms River, Mill Creek, and Wrangel Brook  study basins, is the fourth watershed assessment  completed by the Pinelands Commission as part of a  long-term environmental-monitoring program initiated in  1990. Based on the results of the Mullica River Basin study,  less intense biological-sampling protocols were used to  conduct assessments of the Rancocas Creek Basin and  the Great Egg Harbor River Watershed Management  Area. Nonnative species,  pH, and specific conductance were selected as the  primary ecological indicators used to assess the status of  surface waters in those two studies. Commission scientists targeted non-  Pinelands plants and nonnative fish in 20-m stream  reaches located at road crossings. By targeting the latebreeding  bullfrog, a nonnative species that is generally  found at degraded sites, anuran-vocalization surveys were  limited to the latter part of the anuran-breeding season.
Cerceris songhai Guichard 1993
Creators: name: Gadallah, Neveen S.
name: Abu El-Ghiet, Usama M.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Crabronidae
Cerceris
Cerceris songhai

description: Cerceris songhai Guichard, 1993
Distribution in Jazan and collecting period: Abu Arish (March) (Guichard, 1993).
description: Published as part of Gadallah, Neveen S. & Abu El-Ghiet, Usama M., 2024, Sphecidae sensu lato (Hymenoptera: Apoidea) of the Jazan Province, south-west of Saudi Arabia, with the description of two new species, pp. 71-95 in Zootaxa 5492 (1) on page 90, DOI: 10.11646/zootaxa.5492.1.4, http://zenodo.org/record/13212094
Additional file 2: of Methodological quality and transparency of clinical practice guidelines for the pharmacological treatment of non-communicable diseases using the AGREE II instrument: a systematic review protocol
Creators: name: Molino, Caroline
name: Ribeiro, Eliane
name: Romano-Lieber, Nicolina
name: Airton Stein
name: Melo, Daniela
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Sample search: sample search for the database MEDLINE (through PubMed). (PDF 298Â kb)
Pinelands Comprehensive Management Plan
Creators: name: No Name Supplied
Publisher: name: New Jersey Pinelands Commission
Year: 2007

description: The Comprehensive Management Plan implements, and is an exercise of, the powers granted to the Pinelands Commission by the 1979 New Jersey Pinelands Protection Act  and the Federal National Parks and Recreation Act of 1978.  The regulations and standards it contains are designed to promote orderly development of the Pinelands so as to preserve and protect the significant and unique natural, ecological, agricultural, archaeological, historical, scenic, cultural and recreational resources of the Pinelands.
New Jersey Pinelands Commission: Annual Report 2001
Creators: name: No Name Supplied
Publisher: name: New Jersey Pinelands Commission
Year: 2007

description: This is an annual report of the New Jersey Pinelands Commission for the year 2001.  It describes the activities of the Pinelands Commission for the year 2001, including major policy initiatives and rule amendments, land protection programs, permitting and regulatory affairs, science and research activities, and public education and outreach.
New Jersey Pinelands Commission: Annual Report 2002
Creators: name: No Name Supplied
Publisher: name: New Jersey Pinelands Commission
Year: 2007

description: This is an annual report of the New Jersey Pinelands Commission for the year 2002.  It describes the activities of the Pinelands Commission for the year 2002, including a review of the Comprehensive Management Plan, addressing growth issues and land protection, protecting water and habitat resources, permitting and regulatory affairs, science and research activities, and public education and outreach.
New Jersey Pinelands Commission: Annual Report 2005
Creators: name: No Name Supplied
Publisher: name: New Jersey Pinelands Commission
Year: 2007

description: This is an annual report of the New Jersey Pinelands Commission for the year 2005.  It describes the activities of the Pinelands Commission for the year 2005, general management, addressing growth issues and land protection, protecting water and habitat resources, permitting and regulatory affairs, science and research activities, review of municipal ordinances, and public education and outreach.
Cerceris spinipectus F. Smith 1856
Creators: name: Gadallah, Neveen S.
name: Abu El-Ghiet, Usama M.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Crabronidae
Cerceris
Cerceris spinipectus

description: Cerceris spinipectus F. Smith, 1856
Distribution in Jazan and collecting period: Fayfa (February) (de Beaumont, 1951, 1962; Guichard, 1993).
description: Published as part of Gadallah, Neveen S. & Abu El-Ghiet, Usama M., 2024, Sphecidae sensu lato (Hymenoptera: Apoidea) of the Jazan Province, south-west of Saudi Arabia, with the description of two new species, pp. 71-95 in Zootaxa 5492 (1) on page 90, DOI: 10.11646/zootaxa.5492.1.4, http://zenodo.org/record/13212094
Ambient air pollution contributed to pulmonary tuberculosis in China
Creators: name: Li, Zhongqi
name: Liu, Qiao
name: Chen, Liang
name: Zhou, Liping
name: Qi, Wei
name: Wang, Chaocai
name: Zhang, Yu
name: Tao, Bilin
name: Zhu, Limei
name: Martinez, Leonardo
name: Lu, Wei
name: Wang, Jianming
Publisher: name: Taylor & Francis
Year: 2024
Subjects: Biotechnology
Environmental Sciences not elsewhere classified
Chemical Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Science Policy
Computational Biology

description: Published studies on outdoor air pollution and tuberculosis risk have shown heterogeneous results. Discrepancies in prior studies may be partially explained by the limited geographic scope, diverse exposure times, and heterogeneous statistical methods. Thus, we conducted a multi-province, multi-city time-series study to comprehensively investigate this issue. We selected 67 districts or counties from all geographic regions of China as study sites. We extracted data on newly diagnosed pulmonary tuberculosis (PTB) cases, outdoor air pollutant concentrations, and meteorological factors in 67 sites from January 1, 2014 to December 31, 2019. We utilized a generalized additive model to evaluate the relationship between ambient air pollutants and PTB risk. Between 2014 and 2019, there were 172,160 newly diagnosed PTB cases reported in 67 sites. With every 10-μg/m3 increase in SO2, NO2, PM10, PM2.5, and 1-mg/m3 in CO, the PTB risk increased by 1.97% [lag 0 week, 95% confidence interval (CI): 1.26, 2.68], 1.30% (lag 0 week, 95% CI: 0.43, 2.19), 0.55% (lag 8 weeks, 95% CI: 0.24, 0.85), 0.59% (lag 10 weeks, 95% CI: 0.16, 1.03), and 5.80% (lag 15 weeks, 95% CI: 2.96, 8.72), respectively. Our results indicated that ambient air pollutants were positively correlated with PTB risk, suggesting that decreasing outdoor air pollutant concentrations may help to reduce the burden of tuberculosis in countries with a high burden of tuberculosis and air pollution.