cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Azteca huberi Forel 1906
Creators: name: DE ALBUQUERQUE, EMÍLIA ZOPPAS
name: PRADO, LÍVIA PIRES DO
name: ANDRADE-SILVA, JOUDELLYS
name: DE SIQUEIRA, EMELY LAIARA SILVA
name: DA SILVA SAMPAIO, KELLY LIANE
name: ALVES, DIEGO
name: BRANDÃO, CARLOS ROBERTO FERREIRA
name: ANDRADE, PALOMA L.
name: FEITOSA, RODRIGO MACHADO
name: DE AZEVEDO KOCH, ELMO BORGES
name: DELABIE, JACQUES HUBERT CHARLES
name: FERNANDES, ITANNA
name: BACCARO, FABRÍCIO BEGGIATO
name: SOUZA, JORGE LUIZ PEREIRA
name: ALMEIDA, RONY PETERSON SANTOS
name: SILVA, ROGÉRIO R.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Azteca
Azteca huberi

description: Azteca huberi Forel, 1906. Municipality unavailable [Emery, 1913b; Borgmeier, 1923; Baroni Urbani, 1977].
 Azteca instabilis (Smith, 1862). Almeirim [MZSP]; Cametá [INPA]; Óbidos [MZSP]; Oriximiná [MZSP; Majer & Delabie, 1994]; Terra Santa [Santos et al., 2008].
description: Published as part of DE ALBUQUERQUE, EMÍLIA ZOPPAS, PRADO, LÍVIA PIRES DO, ANDRADE-SILVA, JOUDELLYS, DE SIQUEIRA, EMELY LAIARA SILVA, DA SILVA SAMPAIO, KELLY LIANE, ALVES, DIEGO, BRANDÃO, CARLOS ROBERTO FERREIRA, ANDRADE, PALOMA L., FEITOSA, RODRIGO MACHADO, DE AZEVEDO KOCH, ELMO BORGES, DELABIE, JACQUES HUBERT CHARLES, FERNANDES, ITANNA, BACCARO, FABRÍCIO BEGGIATO, SOUZA, JORGE LUIZ PEREIRA, ALMEIDA, RONY PETERSON SANTOS & SILVA, ROGÉRIO R., 2021, Ants of the State of Pará, Brazil: a historical and comprehensive dataset of a key biodiversity hotspot in the Amazon Basin, pp. 1-83 in Zootaxa 5001 (1) on page 19, DOI: 10.11646/zootaxa.5001.1.1, http://zenodo.org/record/5122523
Multidimensional tests of a finite-volume solver for MHD with a real-gas equation of state
Creators: name: King, J. R.
name: Masti, R.
name: Srinivasan, B.
name: Beckwith, K.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Computational Physics (physics.comp-ph)
subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: This work considers two algorithms of a finite-volume solver for the MHD equations with a real-gas equation of state (EOS). Both algorithms use a multistate form of Harten-Lax-Van Leer approximate Riemann solver as formulated for MHD discontinuities. This solver is modified to use the generalized sound speed from the real-gas EOS. Two methods are tested: EOS evaluation at cell centers and at flux interfaces where the former is more computationally efficient. A battery of 1D and 2D tests are employed: convergence of 1D and 2D linearized waves, shock tube Riemann problems, a 2D nonlinear circularly polarized Alfvén wave, and a 2D magneto-Rayleigh-Taylor instability test. The cell-centered EOS evaluation algorithm produces unresolvable thermodynamic inconsistencies in the intermediate states leading to spurious solutions while the flux-interface EOS evaluation algorithm robustly produces the correct solution. The linearized wave tests show this inconsistency is associated with the magnetosonic waves and the magneto-Rayleigh-Taylor instability test demonstrates simulation results where the spurious solution leads to an unphysical simulation.
Oxidative Stress and Inflammatory Modulation of Ca2+ Handling in Metabolic HFpEF-Related Left Atrial Cardiomyopathy
Creators: name: Bode, David
name: Wen, Yan
name: Hegemann, Niklas
name: Primessnig, Uwe
name: Parwani, Abdul
name: Boldt, Leif-Hendrik
name: Pieske, Burkert M.
name: Heinzel, Frank R.
name: Hohendanner, Felix
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: inflammation
subject: reactive oxygen species
subject: atrial cardiomyopathy
subject: heart failure with preserved ejection fraction (HFpEF)
subject: metabolic syndrome
subject: excitation-contraction coupling
subject: calcium
subject: left atrial cardiomyocytes
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Metabolic syndrome-mediated heart failure with preserved ejection fraction (HFpEF) is commonly accompanied by left atrial (LA) cardiomyopathy, significantly affecting morbidity and mortality. We evaluate the role of reactive oxygen species (ROS) and intrinsic inflammation (TNF-α, IL-10) related to dysfunctional Ca2+ homeostasis of LA cardiomyocytes in a rat model of metabolic HFpEF. ZFS-1 obese rats showed features of HFpEF and atrial cardiomyopathy in vivo: increased left ventricular (LV) mass, E/e' and LA size and preserved LV ejection fraction. In vitro, LA cardiomyocytes exhibited more mitochondrial-fission (MitoTracker) and ROS-production (H2DCF). In wildtype (WT), pro-inflammatory TNF-α impaired cellular Ca2+ homeostasis, while anti-inflammatory IL-10 had no notable effect (confocal microscopy; Fluo-4). In HFpEF, TNF-α had no effect on Ca2+ homeostasis associated with decreased TNF-α receptor expression (western blot). In addition, IL-10 substantially improved Ca2+ release and reuptake, while IL-10 receptor-1 expression was unaltered. Oxidative stress in metabolic syndrome mediated LA cardiomyopathy was increased and anti-inflammatory treatment positively affected dysfunctional Ca2+ homeostasis. Our data indicates, that patients with HFpEF-related LA dysfunction might profit from IL-10 targeted therapy, which should be further explored in preclinical trials.
Additional file 1 of Fast photosynthesis measurements for phenotyping photosynthetic capacity of rice
Creators: name: Tingting Du
name: Meng, Ping
name: Jianliang Huang
name: Shaobing Peng
name: Dongliang Xiong
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology
subject: Computational Biology

description: Additional file 1: Table S1. Test of normality (Shapiroâ€“Wilk) for photosynthetic traits of F2 populations. The full name and units of the traits are shown in abbreviations list.
Data from:Association of serum uric acid with all-cause and cardiovascular mortality in nonalcoholic fatty liver disease patients
Creators: name: Yang, Sisi
name: Ye, Ziliang
name: liu, mengyi
name: Zhang, Yanjun
name: Wu, Qimeng
name: Zhou, Chun
name: Zhang, Zhuxian
name: He, Panpan
name: Zhang, Yuanyuan
name: Li, Huan
name: Liu, Chengzhang
name: Qin, Xianhui
Publisher: name: figshare
Year: 2022
Subjects: subject: 111706 Epidemiology
subject: FOS: Health sciences

description: Supplemental Materials for manuscript with title "Association of serum uric acid with all-cause and cardiovascular mortality in nonalcoholic fatty liver disease patients".
Cluster Mass Functions in the Large and Small Magellanic Clouds: Fading and Size of Sample Effects
Creators: name: Hunter, D. A.
name: Elmegreen, B. G.
name: Dupuy, T. J.
name: Mortonson, M.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The properties of 939 star clusters in the Large and Small Magellanic Clouds were determined from ground-based CCD images in UBVR passbands. The areal coverage was extensive, corresponding to 11.0 sq-kpc in the LMC and 8.3 sq-kpc in the SMC. After corrections for reddening, the colors and magnitudes of the clusters were converted to ages and masses, and the resulting mass distributions were searched for the effects of fading, evaporation, and size-of-sample bias. The data show a clear signature of cluster fading below the detection threshold. The initial cluster mass function (ICMF) was determined by fitting the mass and age distributions with cluster population models. These models suggest a new method to determine the ICMF that is nearly independent of fading or disruption and is based on the slope of a correlation between age and the maximum cluster mass in equally spaced intervals of log-age. For a nearly uniform star formation rate, this correlation has a slope equal to 1/(alpha-1) for an ICMF of dn(M)/dM proportional to M^-alpha. We determine that alpha is between 2 and 2.4 for the LMC and SMC using this method plus another method in which models are fit to the mass distribution integrated over age and to the age distribution integrated over mass. The maximum mass method also suggests that the cluster formation rate in the LMC age gap between 3 and 13 Gy is about a factor of ten below that in the period from 0.1 Gy to 1 Gy. The oldest clusters correspond in age and mass to halo globular clusters in the Milky Way. They do not fit the trends for lower-mass clusters but appear to be a separate population that either had a very high star formation rate and became depleted by evaporation or formed with only high masses.
description: To be published in AJ, October 2003. Available from ftp.lowell.edu, cd pub/dah/papers/mccl
Tomosvaryella transvaalensis De Meyer 1993
Creators: name: Motamedinia, Behnam
name: Skevington, Jeffrey H.
name: Kelso, Scott
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Pipunculidae
Tomosvaryella
Tomosvaryella transvaalensis

description: Tomosvaryella transvaalensis De Meyer, 1993
Figs 42A‒E, 64
 Diagnosis: This species can be recognized by the shape of surstyli in dorsal view, constricted in middle, knobshaped apically (Fig. 42A); epandrium wider than long in dorsal view (Fig. 42A); phallus with three ejaculatory ducts, one longer, coiled, bearing small setae in lateral view (Fig. 42D‒E); gonopods equal in height (Fig. 42B), hypandrium ovate-shaped with distinct hypandrial apodeme in ventral view (Fig. 42B).
 Specimens examined: ISRAEL: Nahal Lavan, 30°51’N, 34°36’E, 30.iv.1996, I. Yarom, JSS51786 (1♂, TAU); Sede Halamish, 31°00’N, 35°07’E, 30.iv.1996, A. Freidberg, JSS52093 (1♂, CNC).
 Distribution: Israel, South Africa (Fig. 64).
 Note: This sort of disjunct distribution raises some questions. Could this be a crypic pair of species? Is the gap caused by collecting bias? These questions can only be answered by more field work to try to fill gaps, and molecular work to test existing species concepts. We attempted to sequence these specimens but failed. More work is needed.
description: Published as part of Motamedinia, Behnam, Skevington, Jeffrey H. & Kelso, Scott, 2021, Revision of Tomosvaryella Aczél (Diptera: Pipunculidae) in the Middle East, with description of 19 new species, pp. 1-103 in Zootaxa 5002 (1) on page 76, DOI: 10.11646/zootaxa.5002.1.1, http://zenodo.org/record/5122655
Analysis of Risk Factors and Long-Term Outcomes in Kidney Transplant Patients with Identified Lymphoceles
Creators: name: Lehner, Lukas J.
name: Hohberger, Arnim
name: Marschke, Lisanne
name: Lachmann, Nils
name: Peters, Robert
name: Friedersdorff, Frank
name: Khadzhynov, Dmytro
name: Halleck, Fabian
name: Budde, Klemens
name: Staeck, Oliver
name: Duerr, Michael
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: kidney transplantation
subject: adverse events
subject: lymphoceles
subject: donor specific antibodies
subject: allograft rejection
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: The collection of lymphatic fluids (lymphoceles) is a frequent adverse event following renal transplantation. A variety of surgical and medical factors has been linked to this entity, but reliable data on risk factors and long-term outcomes are lacking. This retrospective single-center study included 867 adult transplant recipients who received a kidney transplantation from 2006 to 2015. We evaluated for patient and graft survival, rejection episodes, or detectable donor-specific antibodies (dnDSA) in patients with identified lymphoceles in comparison to controls. We identified 305/867 (35.2%) patients with lymphocele formation, of whom 72/867 (8.3%) needed intervention. Multivariate analysis identified rejection episode as an independent risk factor (OR 1.61, CI 95% 1.17-2.21, p = 0.003) for lymphocele formation, while delayed graft function was independently associated with symptomatic lymphoceles (OR 1.9, CI 95% 1.16-3.12, p = 0.011). Interestingly, there was no difference in detectable dnDSA between groups with a similar graft and patient survival in all groups after 10 years. Lymphoceles frequently occur after transplantation and were found to be independently associated with rejection episodes, while symptomatic lymphoceles were associated with delayed graft function in our cohort. As both are inflammatory processes, they might play a causative role in the formation of lymphoceles. However, development or intervention of lymphoceles did not lead to impaired graft survival in the long-term.
Monte Carlo study of the ordering of the weakly anisotropic Heisenberg spin glass in magnetic fields
Creators: name: Imagawa, Daisuke
name: Kawamura, Hikaru
Publisher: name: arXiv
Year: 2004
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: The ordering of the three-dimensional Heisenberg spin glass with the weak random anisotropy in magnetic fields is studied by extensive equilibrium Monte Carlo simulations. Both the spin and the chirality are monitored. We find strong numerical evidence that a replica symmetry breaking transition occurs in the chiral sector, which accompanies the simultaneous spin-glass order. Despite the similarity in the global symmetry, the ordering behavior of the weakly anisotropic Heisenberg spin glass differs significantly from that of the strongly anisotropic Ising spin glass. The obtained phase diagram in the temperature - magnetic field plane is similar to the experimental phase diagram. Our results highlight the importance of the chirality in the spin-glass ordering of the Heisenberg-like spin glass, and support the spin-chirality decoupling-recoupling scenario of spin-glass transitions.
description: New Figs.3(c) and 3(d) added. Minor modifications are made in some of the sentences. Accepted for publication in Phys. Rev. B
Azteca fasciata subsp. similis Mann 1916
Creators: name: DE ALBUQUERQUE, EMÍLIA ZOPPAS
name: PRADO, LÍVIA PIRES DO
name: ANDRADE-SILVA, JOUDELLYS
name: DE SIQUEIRA, EMELY LAIARA SILVA
name: DA SILVA SAMPAIO, KELLY LIANE
name: ALVES, DIEGO
name: BRANDÃO, CARLOS ROBERTO FERREIRA
name: ANDRADE, PALOMA L.
name: FEITOSA, RODRIGO MACHADO
name: DE AZEVEDO KOCH, ELMO BORGES
name: DELABIE, JACQUES HUBERT CHARLES
name: FERNANDES, ITANNA
name: BACCARO, FABRÍCIO BEGGIATO
name: SOUZA, JORGE LUIZ PEREIRA
name: ALMEIDA, RONY PETERSON SANTOS
name: SILVA, ROGÉRIO R.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Azteca
Azteca fasciata
Azteca fasciata similis mann, 1916

description: Azteca fasciata similis Mann, 1916. Santarém [Mann, 1916].
 Azteca goeldii Forel, 1906. Municipality unavailable [Emery, 1913b; Borgmeier, 1923].
description: Published as part of DE ALBUQUERQUE, EMÍLIA ZOPPAS, PRADO, LÍVIA PIRES DO, ANDRADE-SILVA, JOUDELLYS, DE SIQUEIRA, EMELY LAIARA SILVA, DA SILVA SAMPAIO, KELLY LIANE, ALVES, DIEGO, BRANDÃO, CARLOS ROBERTO FERREIRA, ANDRADE, PALOMA L., FEITOSA, RODRIGO MACHADO, DE AZEVEDO KOCH, ELMO BORGES, DELABIE, JACQUES HUBERT CHARLES, FERNANDES, ITANNA, BACCARO, FABRÍCIO BEGGIATO, SOUZA, JORGE LUIZ PEREIRA, ALMEIDA, RONY PETERSON SANTOS & SILVA, ROGÉRIO R., 2021, Ants of the State of Pará, Brazil: a historical and comprehensive dataset of a key biodiversity hotspot in the Amazon Basin, pp. 1-83 in Zootaxa 5001 (1) on page 18, DOI: 10.11646/zootaxa.5001.1.1, http://zenodo.org/record/5122523
Improving the Bond Strength of Radiographically Tagged Caries Lesions In Vitro
Creators: name: Toelle, Sophia
name: Holtkamp, Agnes
name: Blunck, Uwe
name: Paris, Sebastian
name: Schwendicke, Falk
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: bonding
subject: caries
subject: dental
subject: diagnostics
subject: radiography
subject: residual caries
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: After selective carious tissue removal, residual carious lesions remain radiographically detectable. Radiopaque tagging resolves the resulting diagnostic uncertainty but impedes bond strengths of adhesives to tagged dentin. We developed a protocol mitigating these detrimental effects. A 30%/50%/70% SnCl2 solution was dissolved in distilled water or a 30%/50%/90% ethanol solution (E30/60/90) and applied to artificially induced dentin lesions. Tagging effects were radiographically evaluated using transversal wavelength-independent microradiography (n = 6/group). Groups with sufficient tagging effects at the lowest SnCl2 concentrations were used to evaluate how tagging affected the microtensile bond strength of a universal adhesive (Scotchbond Universal) to sound and carious dentin (n = 10/group). Two different protocols for removing tagging material were tested: 15 s phosphoric acid etching and 5 s rotating brush application. Scanning/backscattered electron microscopy (SEM/BSE) and energy-dispersive X-ray spectroscopy (EDS) were used to assess surfaces after tagging and removal. The most promising removal protocol was revalidated microradiographically. Tagging significantly increased the radiopacity, with consistent effects for 30% SnCl2 dissolved in water or E30. Microscopically, tagged surfaces showed a thick carpet of SnCl2, and tagging reduced bond strengths significantly on carious dentin but not on sound dentin (p < 0.01). On carious dentin, removal of tagging material using acid etching and rotating brush was microscopically confirmed. Acid etching also mitigated any bond strength reduction (median: 21.3 MPa; interquartile range: 10.8 MPa) compared with nontagged dentin (median: 17.4 MPa; interquartile range: 20.6 MPa). This was not the case for brushing (median: 13.2 MPa; interquartile range: 13.9 MPa). Acid etching minimally reduced the radiographic tagging effect (p = 0.055). Phosphoric acid etching reduces the detrimental bond-strength effects of tagging without significantly decreasing radiographic tagging effects when using a universal adhesive.
Routes to gelation in a clay suspension
Creators: name: Ruzicka, B.
name: Zulian, L.
name: Ruocco, G.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: The gelation of water suspension of a synthetic clay (Laponite) has been studied by dynamic light scattering in a wide range of clay weight concentration (Cw = 0.003-0.031). At variance with previous determination, indicating a stable liquid phase for Cw < Cw*=0.015-0.018, we find that the gelation takes actually place in the whole examined Cw range. More importantly, we find that Cw* marks the transition between two different routes to gelation. We hypothesize that at low concentration Laponite suspension behaves as an attractive colloid and that the slowing down of the dynamics is attained by the formation of larger and larger clusters while at high concentration the basic units of the gel could be the Debye Huckel spheres associated to single Laponite plates.
description: 5 pages, 4 figures
Additional file 3 of What evidence exists on the impact of agricultural practices in fruit orchards on biodiversity? A systematic map
Creators: name: Meer, Markus
name: Kay, Sonja
name: LÃ¼scher, Gisela
name: Jeanneret, Philippe
Publisher: name: figshare
Year: 2020
Subjects: subject: Space Science
subject: Medicine
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology

description: Additional file 3. Pictures of orchards, complemental figures and tables.
Electrical spectroscopy of forward volume spin waves in perpendicularly magnetized materials
Creators: name: Sushruth, M.
name: Grassi, M.
name: Ait-Oukaci, K.
name: Stoeffler, D.
name: Henry, Y.
name: Lacour, D.
name: Hehn, M.
name: Bhaskar, U
name: Bailleul, M.
name: Devolder, T.
name: Adam, J. -P.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We study the potential of all-electrical inductive techniques for the spectroscopy of propagating forward volume spin waves. We develop a one-dimensional model to account for the electrical signature of spin-wave reflection and transmission between inductive antennas and validate it with experiments on a perpendicularly magnetized Co/Ni multilayer. We describe the influence of the antenna geometry and antenna-to-antenna separation, as well as that of the material parameters on the lineshape of the inductive signals. For a finite damping, the broadband character of the antenna emission in the wave vector space imposes to take into account the growing decoherence of the magnetization waves upon their spatial propagation. The transmission signal can be viewed as resulting from two contributions: a first one from propagating spin-waves leading to an oscillatory phase of the broadband transmission coefficient, and another one originating from the distant induction of ferromagnetic resonance because of the long-range stray fields of realistic antennas. Depending on the relative importance of these two contributions, the decay of the transmitted signal with the propagation distance may not be exponential and the oscillatory character of the spin-wave phase upon propagation may be hidden. Our model and its experimental validation allow to define geometrical and material specifications to be met to enable the use of forward volume spin waves as efficient information carriers.
Microwave Properties of Ba(0.6)K(0.4)BiO(3) Crystals
Creators: name: Fricano, S.
name: Bonura, M.
name: Gallitto, A. Agliolo
name: Vigni, M. Li
name: Klinkova, L. A.
name: Barkovskii, N. V.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We report on field-induced variations of the microwave surface resistance at 9.6 GHz of Ba(0.6)K(0.4)BiO(3) crystals. Energy losses have been investigated as a function of the static magnetic field in the range of temperatures 4.2 K - Tc. By analyzing the experimental results in the framework of the Coffey and Clem model we determine the temperature dependence of the first-penetration field, upper critical field and depinning frequency. The results show that the pinning energy of this bismuthate superconductor is weaker than those of cuprates.
description: 6 pages, 8 embedded figures
Additional file 1 of ITGAL infers adverse prognosis and correlates with immunity in acute myeloid leukemia
Creators: name: Li, Ran
name: Wu, Xiaolu
name: Xue, Kai
name: Li, Junmin
Publisher: name: figshare
Year: 2022
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Hematology

description: Additional file 1: Table S1. The characteristics of ITGAL in inclusive samples. Table S2. The univariate and multivariate analysis of clinical factors in AML samples. Figure S1. Kaplan–Meier survival curves for high- and low-ITGAL groups. Tertiles (A) or quartiles (B) of ITGAL expression were used as the cut-off value. Figure S2. A novel nomogram for AML prognosis. (A) Nomogram for predicting the probability of 1-, 3-, 5-year OS for AML. (B) Calibration plot of the nomogram. (C) ROC analysis for the nomogram.
Deciphering the Immune Microenvironment on A Single Archival Formalin-Fixed Paraffin-Embedded Tissue Section by An Immediately Implementable Multiplex Fluorescence Immunostaining Protocol
Creators: name: Guillot, Adrien
name: Kohlhepp, Marlene S.
name: Bruneau, Alix
name: Heymann, Felix
name: Tacke, Frank
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: multiplexing immunohistochemistry
subject: image analysis
subject: immune profiling
subject: liver inflammation
subject: hepatocellular carcinoma
subject: macrophages
subject: fibrosis
subject: steatohepatitis
subject: tumor microenvironment
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Technological breakthroughs have fundamentally changed our understanding on the complexity of the tumor microenvironment at the single-cell level. Characterizing the immune cell composition in relation to spatial distribution and histological changes may provide important diagnostic and therapeutic information. Immunostaining on formalin-fixed paraffin-embedded (FFPE) tissue samples represents a widespread and simple procedure, allowing the visualization of cellular distribution and processes, on preserved tissue structure. Recent advances in microscopy and molecular biology have made multiplexing accessible, yet technically challenging. We herein describe a novel, simple and cost-effective method for a reproducible and highly flexible multiplex immunostaining on archived FFPE tissue samples, which we optimized for solid organs (e.g., liver, intestine, lung, kidney) from mice and humans. Our protocol requires limited specific equipment and reagents, making multiplexing (>12 antibodies) immediately implementable to any histology laboratory routinely performing immunostaining. Using this method on single sections and combining it with automated whole-slide image analysis, we characterize the hepatic immune microenvironment in preclinical mouse models of liver fibrosis, steatohepatitis and hepatocellular carcinoma (HCC) and on human-patient samples with chronic liver diseases. The data provide useful insights into tissue organization and immune-parenchymal cell-to-cell interactions. It also highlights the profound macrophage heterogeneity in liver across premalignant conditions and HCC.
Faraday Rotation as a Diagnostic of Galactic Foreground Contamination of CMB Maps
Creators: name: Dineen, Patrick
name: Coles, Peter
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present a diagnostic test of possible Galactic contamination of cosmic microwave background sky maps designed to provide an independent check on the methods used to compile these maps. The method involves a non-parametric measurement of cross-correlation between the Faraday rotation measure (RM) of extragalactic sources and the measured microwave signal at the same angular position. We argue that statistical properties of the observed distribution of rotation measures are consistent with a Galactic origin, an argument reinforced by a direct measurement of cross-correlation between dust, free-free and synchrotron foreground maps and RM values with the strongest correlation being for dust and free-free. We do not find any statistically compelling evidence for correlations between the RM values and the COBE DMR maps at any frequency, so there is no evidence of residual contamination in these CMB maps. On the other hand, there is a statistically significant correlation of RM with the preliminary WMAP individual frequency maps which remains significant in the Tegmark et al. Wiener-filtered map but not in the Internal Linear Combination map produced by the WMAP team.
description: 8 pages, 1 figure, accepted for publication in MNRAS
Dolichoderus setosus
Creators: name: DE ALBUQUERQUE, EMÍLIA ZOPPAS
name: PRADO, LÍVIA PIRES DO
name: ANDRADE-SILVA, JOUDELLYS
name: DE SIQUEIRA, EMELY LAIARA SILVA
name: DA SILVA SAMPAIO, KELLY LIANE
name: ALVES, DIEGO
name: BRANDÃO, CARLOS ROBERTO FERREIRA
name: ANDRADE, PALOMA L.
name: FEITOSA, RODRIGO MACHADO
name: DE AZEVEDO KOCH, ELMO BORGES
name: DELABIE, JACQUES HUBERT CHARLES
name: FERNANDES, ITANNA
name: BACCARO, FABRÍCIO BEGGIATO
name: SOUZA, JORGE LUIZ PEREIRA
name: ALMEIDA, RONY PETERSON SANTOS
name: SILVA, ROGÉRIO R.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Dolichoderus
Dolichoderus setosus

description: Dolichoderus setosus (Kempf, 1959). Municipality unavailable [Kempf, 1972c; MacKay, 1993].
 Dolichoderus spinicollis (Latreille, 1817). Municipality unavailable [Kempf, 1972c; Ortiz-Sepúlveda & Fernández, 2011]; Santarém [Kempf, 1959a; MacKay, 1993].
 Dolichoderus tristis Mann, 1916. Municipality unavailable [Brandão, 1991; MacKay, 1993]; Mojuí dos Campos [MZSP]; Santarém [Jeanne, 1979].
 Dolichoderus varians Mann, 1916. Municipality unavailable [Kempf, 1972c]; Belém [MPEG; Kempf, 1972a]; Paragominas [Solar et al., 2016b].
description: Published as part of DE ALBUQUERQUE, EMÍLIA ZOPPAS, PRADO, LÍVIA PIRES DO, ANDRADE-SILVA, JOUDELLYS, DE SIQUEIRA, EMELY LAIARA SILVA, DA SILVA SAMPAIO, KELLY LIANE, ALVES, DIEGO, BRANDÃO, CARLOS ROBERTO FERREIRA, ANDRADE, PALOMA L., FEITOSA, RODRIGO MACHADO, DE AZEVEDO KOCH, ELMO BORGES, DELABIE, JACQUES HUBERT CHARLES, FERNANDES, ITANNA, BACCARO, FABRÍCIO BEGGIATO, SOUZA, JORGE LUIZ PEREIRA, ALMEIDA, RONY PETERSON SANTOS & SILVA, ROGÉRIO R., 2021, Ants of the State of Pará, Brazil: a historical and comprehensive dataset of a key biodiversity hotspot in the Amazon Basin, pp. 1-83 in Zootaxa 5001 (1) on page 22, DOI: 10.11646/zootaxa.5001.1.1, http://zenodo.org/record/5122523
Additional file 6 of 0.9% saline versus Plasma-Lyte as initial fluid in children with diabetic ketoacidosis (SPinK trial): a double-blind randomized controlled trial
Creators: name: Vijai Williams
name: Muralidharan Jayashree
name: Karthi Nallasamy
name: Dayal, Devi
name: Rawat, Amit
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Developmental Biology
subject: Plant Biology
subject: FOS: Biological sciences
subject: Computational Biology

description: Additional file 6: Figure S5: Trends of serum chloride, corrected sodium and effective osmolality.
The Effects of MELD-Based Liver Allocation on Patient Survival and Waiting List Mortality in a Country with a Low Donation Rate
Creators: name: Ritschl, Paul V.
name: Wiering, Leke
name: Dziodzio, Tomasz
name: Jara, Maximilian
name: Kruppa, Jochen
name: Schoeneberg, Uwe
name: Raschzok, Nathanael
name: Butz, Frederike
name: Globke, Brigitta
name: Seika, Philippa
name: Maurer, Max
name: Biebl, Matthias
name: Schöning, Wenzel
name: Schmelzle, Moritz
name: Sauer, Igor M.
name: Tacke, Frank
name: Öllinger, Robert
name: Pratschke, Johann
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: liver transplantation
subject: allocation policy
subject: donor shortage
subject: organ donation
subject: Germany
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: The Model for End-Stage Liver Disease (MELD)-based allocation system was implemented in Germany in 2006 in order to reduce waiting list mortality. The purpose of this study was to evaluate post-transplant results and waiting list mortality since the introduction of MELD-based allocation in our center and in Germany. Adult liver transplantation at the Charité-Universitätsmedizin Berlin was assessed retrospectively between 2005 and 2012. In addition, open access data from Eurotransplant (ET) and the German Organ Transplantation Foundation (DSO) were evaluated. In our department, 861 liver transplantations were performed from 2005 to 2012. The mean MELD score calculated with the laboratory values last transmitted to ET before organ offer (labMELD) at time of transplantation increased to 20.1 from 15.8 (Pearson's R = 0.121, p < 0.001, confidence interval (CI) = 0.053-0.187). Simultaneously, the number of transplantations per year decreased from 139 in 2005 to 68 in 2012. In order to overcome this organ shortage the relative number of utilized liver donors in Germany has increased (85% versus 75% in non-German ET countries). Concomitantly, 5-year patient survival decreased from 79.9% in 2005 to 60.3% in 2012 (p = 0.048). At the same time, the ratio of waiting list mortality vs. active-listed patients nearly doubled in Germany (Spearman's rho = 0.903, p < 0.001, CI = 0.634-0.977). In low-donation areas, MELD-based liver allocation may require reconsideration and inclusion of prognostic outcome factors
title: 01_1298
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
Cylindromyrmex Mayr 1870
Creators: name: DE ALBUQUERQUE, EMÍLIA ZOPPAS
name: PRADO, LÍVIA PIRES DO
name: ANDRADE-SILVA, JOUDELLYS
name: DE SIQUEIRA, EMELY LAIARA SILVA
name: DA SILVA SAMPAIO, KELLY LIANE
name: ALVES, DIEGO
name: BRANDÃO, CARLOS ROBERTO FERREIRA
name: ANDRADE, PALOMA L.
name: FEITOSA, RODRIGO MACHADO
name: DE AZEVEDO KOCH, ELMO BORGES
name: DELABIE, JACQUES HUBERT CHARLES
name: FERNANDES, ITANNA
name: BACCARO, FABRÍCIO BEGGIATO
name: SOUZA, JORGE LUIZ PEREIRA
name: ALMEIDA, RONY PETERSON SANTOS
name: SILVA, ROGÉRIO R.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Cylindromyrmex

description: Cylindromyrmex Mayr, 1870
 Cylindromyrmex striatus Mayr, 1870. Melgaço [MPEG]; Santarém [MZSP; Overal & Bandeira, 1985; Vasconcelos et al., 2006].
description: Published as part of DE ALBUQUERQUE, EMÍLIA ZOPPAS, PRADO, LÍVIA PIRES DO, ANDRADE-SILVA, JOUDELLYS, DE SIQUEIRA, EMELY LAIARA SILVA, DA SILVA SAMPAIO, KELLY LIANE, ALVES, DIEGO, BRANDÃO, CARLOS ROBERTO FERREIRA, ANDRADE, PALOMA L., FEITOSA, RODRIGO MACHADO, DE AZEVEDO KOCH, ELMO BORGES, DELABIE, JACQUES HUBERT CHARLES, FERNANDES, ITANNA, BACCARO, FABRÍCIO BEGGIATO, SOUZA, JORGE LUIZ PEREIRA, ALMEIDA, RONY PETERSON SANTOS & SILVA, ROGÉRIO R., 2021, Ants of the State of Pará, Brazil: a historical and comprehensive dataset of a key biodiversity hotspot in the Amazon Basin, pp. 1-83 in Zootaxa 5001 (1) on page 23, DOI: 10.11646/zootaxa.5001.1.1, http://zenodo.org/record/5122523
The Host-Specific Intestinal Microbiota Composition Impacts Campylobacter coli Infection in a Clinical Mouse Model of Campylobacteriosis
Creators: name: Heimesaat, Markus M.
name: Genger, Claudia
name: Klove, Sigri
name: Weschka, Dennis
name: Mousavi, Soraya
name: Bereswill, Stefan
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: Campylobacter coli
subject: campylobacteriosis model
subject: host–pathogen interaction
subject: intestinal immunopathology
subject: bacterial colonization capacity
subject: host-specific intestinal microbiota
subject: fecal microbiota transplantation
subject: colonization resistance
subject: microbiota-depleted IL-10−/− mice
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Human Campylobacter-infections are progressively rising globally. However, the molecular mechanisms underlying C. coli-host interactions are incompletely understood. In this study, we surveyed the impact of the host-specific intestinal microbiota composition during peroral C. coli infection applying an established murine campylobacteriosis model. Therefore, microbiota-depleted IL-10-/- mice were subjected to peroral fecal microbiota transplantation from murine versus human donors and infected with C. coli one week later by gavage. Irrespective of the microbiota, C. coli stably colonized the murine gastrointestinal tract until day 21 post-infection. Throughout the survey, C. coli-infected mice with a human intestinal microbiota displayed more frequently fecal blood as their murine counterparts. Intestinal inflammatory sequelae of C. coli-infection could exclusively be observed in mice with a human intestinal microbiota, as indicated by increased colonic numbers of apoptotic epithelial cells and innate as well as adaptive immune cell subsets, which were accompanied by more pronounced pro-inflammatory cytokine secretion in the colon and mesenteric lymph nodes versus mock controls. However, in extra-intestinal, including systemic compartments, pro-inflammatory responses upon pathogen challenge could be assessed in mice with either microbiota. In conclusion, the host-specific intestinal microbiota composition has a profound effect on intestinal and systemic pro-inflammatory immune responses during C. coli infection.
Pituitary Adenylate Cyclase-Activating Polypeptide Alleviates Intestinal, Extra-Intestinal and Systemic Inflammatory Responses during Acute Campylobacter jejuni-induced Enterocolitis in Mice
Creators: name: Heimesaat, Markus M.
name: Mousavi, Soraya
name: Kløve, Sigri
name: Genger, Claudia
name: Weschka, Dennis
name: Tamas, Andrea
name: Reglodi, Dora
name: Bereswill, Stefan
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2020
Subjects: subject: pituitary adenylate cyclase-activating polypeptide (PACAP)
subject: cellular protection
subject: anti-apoptotic properties
subject: immune modulation
subject: anti-inflammatory effects
subject: cell proliferation and regeneration
subject: Campylobacter jejuni
subject: acute campylobacteriosis model
subject: host-pathogen interaction
subject: gut-brain axis
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Human Campylobacter jejuni infections are emerging, and constitute a significant health burden worldwide. The ubiquitously expressed pituitary adenylate cyclase-activating polypeptide (PACAP) is well-known for its cell-protective and immunomodulatory effects. In our actual intervention study, we used an acute campylobacteriosis model and assessed the potential disease-alleviating effects of exogenous PACAP. Therefore, secondary abiotic IL-10-/- mice were perorally infected with C. jejuni and treated with synthetic PACAP38 intraperitoneally from day 2 until day 5 post-infection. Whereas PACAP did not interfere with the gastrointestinal colonization of the pathogen, mice from the PACAP group exhibited less severe clinical signs of C. jejuni-induced disease, as compared to mock controls, which were paralleled by alleviated apoptotic, but enhanced cell proliferative responses in colonic epithelia on day 6 post-infection. Furthermore, PACAP dampened the accumulation of macrophages and monocytes, but enhanced regulatory T cell responses in the colon, which were accompanied by less IFN-γ secretion in intestinal compartments in PACAP versus mock-treated mice. Remarkably, the inflammation-dampening properties of PACAP could also be observed in extra-intestinal organs, and strikingly, even the systemic circulation on day 6 post-infection. For the first time, we provide evidence that synthetic PACAP might be a promising candidate to combat acute campylobacteriosis and post-infectious sequelae.
Noncontextuality Inequalities from Antidistinguishability
Creators: name: Leifer, Matthew S.
name: Duarte, Cristhiano
Publisher: name: arXiv
Year: 2020
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Noncontextuality inequalities are usually derived from the distinguishability properties of quantum states, i.e. their orthogonality. Here, we show that antidistinguishability can also be used to derive noncontextuality inequalities. The Yu-Oh 13 ray noncontextuality inequality can be re-derived and generalized as an instance of our antidistinguishability method. For some sets of states, the antidistinguishability method gives tighter bounds on noncontextual models than just considering orthogonality, and the Hadamard states provide an example of this. We also derive noncontextuality inequalities based on mutually unbiased bases and symmetric informationally complete POVMs. Antidistinguishability based inequalities were initially discovered as overlap bounds for the reality of the quantum state. Our main contribution here is to show that they are also noncontextuality inequalities.
description: Comments are welcome!
Additional file 1 of Impact of preoperative risk factors on outcome after gastrectomy
Creators: name: Ann-Kathrin Eichelmann
name: Saidi, Meltem
name: Lindner, Kirsten
name: Lenschow, Christina
name: Palmes, Daniel
name: Pascher, Andreas
name: Hummel, Richard
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Computational Biology

description: Additional file 1. Cologne Risk score.
Underlying mechanism of numerical instability in large eddy simulation of turbulent flows
Creators: name: Ida, Masato
name: Taniguchi, Nobuyuki
Publisher: name: arXiv
Year: 2004
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: Chaotic Dynamics (nlin.CD)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: This paper extends our recent theoretical work concerning the feasibility of stable and accurate computation of turbulence using a large eddy simulation [Ida and Taniguchi, Phys. Rev. E 68, 036705 (2003)]. In our previous paper, it was shown, based on a simple assumption regarding the instantaneous streamwise velocity, that the application of the Gaussian filter to the incompressible Navier-Stokes equations can result in the appearance of a numerically unstable term that can be decomposed into positive and negative viscosities. That result raises the question as to whether an accurate solution can be achieved by a numerically stable subgrid-scale model. In the present paper, based on assumptions regarding the statistically averaged velocity, we present similar theoretical investigations to show that in several situations, the shears appearing in the statistically averaged velocity field numerically destabilize the fluctuation components because of the derivation of a numerically unstable term that represents negative diffusion in a fixed direction. This finding can explain the problematic numerical instability that has been encountered in large eddy simulations of wall-bounded flows. The present result suggests that this numerical problem is universal in large eddy simulations, and that if there is no failure in modeling, the resulting subgrid-scale model can still have unstable characteristics; that is, the known instability problems of several existing subgrid-scale models are not something that one may remove simply by an artificial technique, but must be taken seriously so as to treat them accurately.
description: A few comments modified, typos corrected; 9 pages, no figure, REVTeX4; to appear in Phys. Rev. E
Machine Learning in Network Security Using KNIME Analytics
Creators: name: Abualkibash, Munther
Publisher: name: arXiv
Year: 2020
Subjects: subject: Cryptography and Security (cs.CR)
subject: FOS: Computer and information sciences

description: Machine learning has more and more effect on our every day's life. This field keeps growing and expanding into new areas. Machine learning is based on the implementation of artificial intelligence that gives systems the capability to automatically learn and enhance from experiments without being explicitly programmed. Machine Learning algorithms apply mathematical equations to analyze datasets and predict values based on the dataset. In the field of cybersecurity, machine learning algorithms can be utilized to train and analyze the Intrusion Detection Systems (IDSs) on security-related datasets. In this paper, we tested different machine learning algorithms to analyze NSL-KDD dataset using KNIME analytics.
title: Lettres patentes du Roi en forme d'Édit, qui donne au conseil souverain de Tournai le titre de Parlement
Creators: name: Louis XIV (Roi De France ; 1638-1715)
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2017
Subjects: Justice royale
Organisation judiciaire

description: Source: http://catalogue.bnf.fr/ark:/12148/cb39373083t.public
description: Coverage: Parlement de Flandres
description: issued: 02/1686
The X-ray absorber of PKS2126-158
Creators: name: Fiore, Fabrizio
name: Elvis, Martin
name: Maiolino, Roberto
name: Nicastro, Fabrizio
name: Siemiginowska, Aneta
name: Stratta, Giulia
name: D'Elia, Valerio
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: BeppoSAX observed the z=3.27 quasar PKS2126-158 on 1999 May 24-28 when its 2-10keV and 0.1-2.5keV fluxes were 1.1E-11 and 4.4E-12 cgs respectively, a factor of 2 higher than in all previous ROSAT and ASCA observations and 40% higher than in two more recent Chandra and XMM-Newton observations. The shortest detected rest frame variability timescale is of a few months, comparable to the causal timescale associated to an emission region of ~10 Schwarzschild radii around a few 1E10 solar masses black hole. The source is detected with a signal to noise ratio S/N>=3 up to ~50 keV, 215 keV rest frame. The BeppoSAX observations confirm the presence of low energy absorption along the line of sight, independent on the continuum model adopted, at high confidence level. Despite the limited spectral resolution of the BeppoSAX LECS and MECS it is possible to put constraints on different absorption and continuum models, but not to unambiguously determine the redshift of the absorber. If the absorber is not significantly ionized the BeppoSAX data do prefer an absorber at z<=2.7. Strong and complex metal line systems along the line of sight to PKS2126-158 have been found at z=0.6631 and at 2.64
description: A&A in press