cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Ocorrência De Operários Dimórficos Em \Textit{Ruptitermes Pitan} (Termitidae, Apicotermitinae)
Creators: name: Silva, Iago Bueno
name: Janei, Vanelize
name: Costa-Leonardo, Ana Maria
Publisher: name: Zenodo
Year: 2017
Subjects: Polimorfismo
Cupins ceifadores
Órgãos deiscentes
Órgãos de defesa

description: A subfamília Apicotermitinae possui 49 gêneros distribuídos entre a África, Neotrópica e região Oriental. Na

Neotrópica, estes cupins não apresentam soldados e o desenvolvimento de castas é pouco conhecido. A linhagem

áptera, ou seja, dos operários, é precedida por dois instares larvais a partir do ovo. Cupins do gênero

\textit{Ruptitermes} forrageiam na superfície do solo e possuem órgãos deiscentes associados ao comportamento

defensivo suicida. No presente estudo, foi investigada a ocorrência de dimorfismo em operários de \textit

{Ruptitermes pitan}, visando contribuir para o conhecimento básico da biologia da espécie. Para diferenciar os

operários, foi realizada uma análise morfométrica da cápsula cefálica (comprimento e largura) e da tíbia

anterior esquerda (comprimento) de 40 operários provenientes de duas colônias, fixados em FAA (álcool

absoluto, ácido acético e formaldeído na proporção 3:1:1), sendo 20 indivíduos de cada colônia. Os dados

obtidos foram submetidos a Análise de Componentes Principais (PCA) e os escores PC1 e PC2 ao teste t para

amostras independentes. Adicionalmente, foi conduzida uma análise histológica e histoquímica para detecção de

proteínas (método xylidine-Ponceau) dos órgãos deiscentes defensivos provenientes dos operários de diferentes

tamanhos. Os resultados da PCA separaram os operários em dois grupos, os quais diferiram significativamente

pela PC1 (t=10,625; gl=26,79; P<0.001), a qual foi negativamente correlacionada com todas as variáveis. Ambos

operários forrageiam, mas existe um número maior de operários pequenos exercendo esta atividade. A histologia

mostrou que ambos possuem órgãos de defesa funcionais (com “explosão”), sendo que estes órgãos deiscentes são

similares em morfologia e contém proteínas. Financiamento: CNPq.
Viking Age hoard from Kinksi, County of Läänemaa
Creators: name: Tamla, Ülle
name: Kiudsoo, Mauri
name: Toome, Tarvi
Publisher: name: Arheoloogilised Välitööd Eestis
Year: 2025

description: Viking Age hoard from Kinksi, County of Läänemaa
description: Arheoloogilised Välitööd Eestis, 2011
Additional file 1 of Genomic divergence and demographic history of Quercus aliena populations
Creators: name: Han, Biao
name: Tong, Boqiang
name: Zhang, Jiliang
name: Bu, Ziheng
name: Zhao, Lijun
name: Xian, Yang
name: Li, Dezhu
name: Xie, Xiaoman
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology

description: Additional file 1: Figure S1. Distribution range of Q. aliena in China, based on specimens from NSII ( http://www.nsii.org.cn/ ).
Oxidative stress-induced S100B accumulation in myoblasts converts myoblasts into brown preadipocytes via an NF-κB/YY1/MIR-133 axis and NF-κB/YY1/BMP7 axis
Creators: name: Giambanco, Ileana
name: Morozzi, Giulio
name: Beccafico, Sara
name: Bellezza, Ilaria
name: Bianchi, Roberta
name: Arcuri, Cataldo
name: Minelli, Alba
name: Donato, Rosario
Publisher: name: Firenze University Press
Year: 2017
Subjects: Myoblast; brown adipocyte; chronic oxidative conditions; S100B; sarcopenia

description: Muscles of sarcopenic people show hypotrophic myofibers and infiltration with adipose and, at later stages, fibrotic tissue. The origin of infiltrating adipocytes resides in fibro-adipogenic precursors, nonmyogenic mesenchymal progenitor cells, and satellite cells, the adult stem cells of skeletal muscles. Myoblasts and brown adipocytes share a common Myf5+ progenitor cell, and cell fate decision depends on levels of BMP7, a TGF-β family member; high BMP7 levels cause Myf5+ progenitor cells to differentiate in brown adipocytes. When expressed at relatively high levels as observed in myoblasts from sarcopenic humans, intracellular S100B, a Ca2+-binding protein of the EF-hand type (1), exerts anti-myogenic effects that are reversed by S100B knockdown (2,3). We show that ROS-activated NF-κB induces accumulation of S100B that causes myoblasts to convert into brown preadipocytes via 1) an NF-κB/YY1 axis that negatively regulates the promyogenic and anti-brown adipogenic miR-133 with consequent accumulation of the pro-brown adipogenic transcription factor, PRDM16, and 2) an NF-κB/YY1/BMP7 axis with resultant BMP7 autocrine activity. Also, culturing L6C8 (S100b-overexpressing) myoblasts (2) in adipocyte differentiation medium causes NF-κB-dependent upregulation of S100B expression, which precedes and is required for lipid droplet formation. Lastly, S100B knockdown in myoblast-derived brown adipocytes reconvert them into fusion competent myoblasts. Thus, S100B is a major molecular determinant of cell fate decision of proliferating myoblasts; while modulating myoblast differentiation (2,3), at high levels S100B promotes myoblast-brown adipocyte transition, which might have pathophysiological implications in sarcopenia.This work was supported by grants from MIUR FIRB RBFR12BUMH_003 and Fondazione CRP 2016.0136.021.
description: Italian Journal of Anatomy and Embryology, Vol. 121, No. 1 (Supplement) 2016
The Medieval market town and cemetery in Põltsamaa
Creators: name: Lavi, Ain
name: Heapost, Leiu
name: Toome, Tarvi
Publisher: name: Arheoloogilised Välitööd Eestis
Year: 2025

description: The Medieval market town and cemetery in Põltsamaa
description: Arheoloogilised Välitööd Eestis, 2011
Bone regeneration strategies in the elderly: the role of ageing and replicative senescence in periosteal-derived stem cells
Creators: name: Dicarlo, Manuela
name: Vozzi, Giovanni
name: Lucarini, Guendalina
name: Cerqueni, Giorgia
name: Orciani, Monia
name: Salvolini, Eleonora
name: Mattioli Belmonte, Monica
Publisher: name: Firenze University Press
Year: 2017
Subjects: Periosteal cells; replicative senescence; aging; NO; tissue engineering

description: Periosteum contains resident progenitor cells (PDPCs) representing an attractive alternative source of mesenchymal stem cells (MSCs) for skeletal tissue engineering approaches based on cell recruitment (1). Increased in life expectancy point out the necessity for customized strategies to restore bone loss due to trauma and/or disease in elderly. Aim of the present research was the evaluation of the ageing impact on PDPCs isolated from differently aged subjects. Moreover, since long-term culture could lead MSCs to senescence, the effects of culture expansion method on young PDPC through sequential serial passages were examined. Age-related increase of p53 expression and impairment in proliferating capacity were observed; those findings were strictly related to nitric oxide (NO) release. Moreover, qRT-PCR analysis showed a greater expression of genes involved in bone remodelling in elderly donors. As far as replicative in vitro expansion was concerned, we observed that later PDPC passages exhibited the typical “replicative senescence” features (i.e. flattened and enlarged morphology, prolonged population doubling time and increased SA-βgal activity). In these cells, p16 rather than p53 seemed to be involved in senescence processes. Similarly to the elderly, the decrease in proliferating ability of in vitro senescent PDPCs was concomitant with a higher NO production, and the changes in the expression of genes involved in bone resorption and RANKL/OPG ratio were superimposable. Interestingly, the relationship between NO release and ageing could represent a cutting edge “replicative senescence index” as emerged by our System Biology approach. In conclusion, our findings suggest that in vivo cell ageing and in vitro subculturing must be taken into account when testing regenerative tissue strategies that use progenitor cells. Indeed, cells (e.g. MSCs and PDPCs) from the earliest subculture passages could be useful to validate any bone tissue engineering strategies, whilst the later ones could be used to test in vitro scaffolds for regenerative medicine approaches in elderly.This work was supported by grants from MIUR (Project PRIN 2010, MIND-2010J8RYS7).
description: Italian Journal of Anatomy and Embryology, Vol. 121, No. 1 (Supplement) 2016
Archaeologocal excavations on the vaults of Mihkli church, Pärnu county
Creators: name: Mäesalu, Ain
name: Malve, Martin
Publisher: name: Arheoloogilised Välitööd Eestis
Year: 2025

description: Archaeologocal excavations on the vaults of Mihkli church, Pärnu county
description: Arheoloogilised Välitööd Eestis, 2011
Meloidogyne incognita
Creators: name: Gordon, Kara L
name: Schrimsher, Drew W
name: Lawrence, Kathy S
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Nematoda
Chromadorea
Rhabditida
Meloidogynidae
Meloidogyne
Meloidogyne incognita

description: Meloidogyne incognita microplot evaluation   The M. incognita infested microplot trials found the additional fertilizer and nematicide combinations did not significantly increase plant height or root fresh weight sampled when data collected PHS and FB were combined (Table 3). Meloidogyne incognita eggs per gram of root were lowest in the application of 28-0-0-5 at PHS, and in the combinations of the nematicide ST + 28-0-0-5 + Vydate ® C-LV at PHS and a nematicide ST + (NH 4) 2 SO 4 + Vydate ® C-LV + Max-In ® Sulfur at PHS and FB. Seed cotton yields were similar across all fertilizer and nematicide combinations in the microplot tests.
description: Published as part of Gordon, Kara L, Schrimsher, Drew W & Lawrence, Kathy S, 2022, Additional fertilizer and nematicide combinations on upland cotton to manage Rotylenchulus reniformis and Meloidogyne incognita in Alabama, pp. 1-15 in Journal of Nematology 54 (1) on page 6, DOI: 10.21307/jofnem-2022-003, http://zenodo.org/record/11644663
The inflamed microenvironment: role on MSCs immunobiology and cancer
Creators: name: Orciani, Monia
name: Sorgentoni, Giulia
name: Caffarini, Miriam
name: Lazzarini, Raffaella
name: Di Primio, Roberto
Publisher: name: Firenze University Press
Year: 2017
Subjects: Inflammation; mesenchymal stem cells; cancer; immunobiology

description: Inflammation and cancer are an inseparable binomial. The majority of cancers are triggered by somatic mutations and environmental factors with a common element: inflammation. Inflammation creates a microenvironment in which neoplastic cells can profit from the trophic factors secreted by inflammatory cells, useful to interfere with the anti-tumor response. Among the others, mesenchymal stem cells (MSCs) participate to microenvironment creation by a strong paracrine effect. The linkage between MSCs and inflammation is bidirectional: the inflamed microenvironment affects the complex MSCs immunobiology, but also MSCs can sustain inflammation. Here, we tried to clarify the influence of inflammation on the immunobiology of MSCs and deepen the paracrine effect of MSCs on tumor growth. MSCs were isolated from periprosthetic capsule caused by breast implant, affected by inflammation (I-MSCs). The contralateral part of the same patient, not inflamed, was used as control (C-MSCs). A panel of selected cytokines were analyzed by Real-Time PCR and ELISA. The cytokines expression was different in I-MSCs compared to C-MSCs, revealing that inflammation affects MSCs immunobiology. Then, C- and I-MSCs were indirectly co-cultured with MCF7 cells from breast adenocarcinoma. New analyses on proliferation rate and cytokines expression were performed. C- and I-MSCs gave almost the same results. The over-secretion of all the cytokines referred to the Th1 pathway and the decrease of those belonging to the Th2 pathway revealed the absence of a switch from Th1 to Th2 important to induce a chronic inflammation. The levels of TGF-β and G-CSF linked to the skill to damage the antigen-presenting cell function were decreased. In conclusion, even if MCF-7 proliferation increased after co-culture with I-MSCs, MSCs-derived paracrine effect does not sustain breast adenocarcinoma. These results absolve the breast implants from the insult to enhance adenocarcinoma onset.
description: Italian Journal of Anatomy and Embryology, Vol. 121, No. 1 (Supplement) 2016
Additional file 2 of Genomic divergence and demographic history of Quercus aliena populations
Creators: name: Han, Biao
name: Tong, Boqiang
name: Zhang, Jiliang
name: Bu, Ziheng
name: Zhao, Lijun
name: Xian, Yang
name: Li, Dezhu
name: Xie, Xiaoman
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology

description: Additional file 2: Figure S2. Nucleotide diversity of the Q. aliena chloroplast genomes. The window size was 800 bp and the step size was 100 bp.
Galaxy and the full spectrum of needs in a small-scale cancer study
Creators: name: Lund-Andersen, Christin
name: Nygård, Ståle
name: Larsen, Stein Gunnar
name: Sigve Nakken
name: Aasheim, Lars Birger
name: Fromm, Bastian
name: Davidson, Ben
name: Dybdahl, Brit
name: Torveig W Abrahamsen
name: Kristensen, Annette T
name: Hovig, Eivind
name: Flatmark, Kjersti
Publisher: name: F1000Research
Year: 2017

description: In small research groups with limited bioinformatics capabilities, there is a need for analyzing various forms of sequencing data in a simple, comprehensive, time and cost effective manner. Galaxy potentially offers the ideal solution for such a situation, providing standardized workflows for a variety of analytical scenarios in a unified framework. However, in a given institutional context, there may be a variety of practical obstacles.

In the poster we present analytical needs and practical obstacles faced in a concrete small-scale research project concerning a patient with peritoneal mesothelioma that responded extremely well to chemotherapy but needed additional treatment options. We performed exome, RNA and miRNA sequencing on tumor samples, and ran a variety of bioinformatics analyses, e.g. detection of somatic variants, copy number variation, mutational signatures, and differential gene and miRNA expression. While the needed bioinformatics methods are available in public Galaxy server(s), one is still dependent on experience with all involved methodologies to make appropriate choices of methods and parameters according to the specifics of the data and research questions. The required competence is available locally through collaboration with various bioinformaticians, where only some offer to provide their analyses through a (public or local) Galaxy platform. This may be due to personal inclinations or technical challenges like running Galaxy within a secure environment. The poster presents the analyses performed for the case, and argue that to truly reach the potential for simplification and streamlining, it is crucial that Galaxy can be used for all involved bioinformatics analyses.
Supplemental Material, sj-pdf-2-ptd-10.1177_0896860820982218 - ISPD recommendations for the evaluation of peritoneal membrane dysfunction in adults: Classification, measurement, interpretation and rationale for intervention
Creators: name: Morelle, Johann
name: Stachowska-Pietka, Joanna
name: Öberg, Carl
name: Gadola, Liliana
name: La Milia, Vincenzo
name: Yu, Zanzhe
name: Lambie, Mark
name: Mehrotra, Rajnish
name: de Arteaga, Javier
name: Davies, Simon
Publisher: name: SAGE Journals
Year: 2022
Subjects: Medicine

description: Supplemental Material, sj-pdf-2-ptd-10.1177_0896860820982218 for ISPD recommendations for the evaluation of peritoneal membrane dysfunction in adults: Classification, measurement, interpretation and rationale for intervention by Johann Morelle, Joanna Stachowska-Pietka, Carl Öberg, Liliana Gadola, Vincenzo La Milia, Zanzhe Yu, Mark Lambie, Rajnish Mehrotra, Javier de Arteaga and Simon Davies in Peritoneal Dialysis International
Archaeological investigations in Rapla churchyard and the osteological analysis on the burials
Creators: name: Malve, Martin
name: Roog, Raido
name: Lillak, Anti
Publisher: name: Arheoloogilised Välitööd Eestis
Year: 2025

description: Archaeological investigations in Rapla churchyard and the osteological analysis on the burials
description: Arheoloogilised Välitööd Eestis, 2011
New binding site of the quorum sensing molecule N-3-Oxododecanoyl homoserine lactone with the transcriptional regulator LasR of Pseudomonas aeruginosa: insights from molecular docking and dynamics simulations
Creators: name: Hovakim Grabski
name: Hunanyan, Lernik
name: Tiratsuyan, Susanna
name: Vardapetyan, Hrachik
Publisher: name: F1000Research
Year: 2017

description: In 2017 World Health Organization announced the list of the most dangerous superbugs and among them is Pseudomonas aeruginosa, which is an antibiotic-resistant opportunistic human pathogen. This organism attacks human patients suffering from such diseases as AIDS, cancer, cystic fibrosis, etc. Current therapies lack efficacy because P. aeruginosa creates and inhabits surface-associated biofilms conferring increased resistance to antibiotics and host immune responses. Biofilm formation is controlled through cell–cell communication system called quorum sensing. The main quorum sensing system of P. aeruginosa includes receptor protein LasR. However, there remains a need for the understanding of the transcriptional regulator LasR, because till date there is no molecular detail information. In the present study, we tried to analyze the molecular properties of the receptor protein LasR as well as the mode of its interactions with signal molecule N-3-oxododecanoyl homoserine lactone (3-O-C12-HSL). The structure of the entire transcriptional regulator LasR was reconstructed. We performed docking and molecular dynamics (MD) simulations of the LasR with 3-O-C12-HSL. So far this is the first report that shows that the native ligand of LasR can interact with the beta turns in the short linker region of the receptor. It can be safely concluded that 3-O-C12-HSL can bind both to ligand binding domain and to the beta turns in the short linker region of the LasR protein, which is a new binding site. Results from this study may be used for future drug development endeavors, which are based on a new anti-infective strategy against quorum sensing.
A discriminatory method for the identification of key transcriptional regulators using epigenetic data
Creators: name: Schmidt, Florian
name: Tzung-Chien Hsieh
name: Gasparoni, Nina
name: Gasparoni, Gilles
name: Polansky, Julia K.
name: Gorka, Oliver
name: Roland, Jürgen
name: Nordström, Karl
name: Sinha, Anupam
name: Chen, Wei
name: Hamann, Alf
name: Rosenstiel, Philip
name: Walter, Jörn
name: Schulz, Marcel H.
Publisher: name: F1000Research
Year: 2017

description: Deciphering the regulatory mechanism that control the establishment and maintenance of cellular programs is an essential task in computational biology. The most accurate approach to understand how transcription factors (TFs) regulate changes in gene expression between tissues is through TF-ChIP-seq experiments. While accurate, these experiments are laborious, time-consuming, and need a priori knowledge of the relevant TFs. Sequence and expression based approaches are less accurate in describing gene expression differences and TF-target relationships. Recently, a number of genome-wide open-chromatin assays, e.g. DNaseI-seq or ATAC-seq, can be utilized to measure open-chromatin regions,which can be combined with computational TF-binding annotation.

Here, we present DYNAMITE, a two-step machine learning approach that uses only open-chromatin data as input to identify TFs that are key regulators of gene expression changes between tissues.

First, a new statistical approach is developed for the computation of differential TF-binding scores for each gene and TF. Second, an interpretable logistic regression classifier is used to prioritize TFs that are best suited to classify gene expression differences.

In the scope of DEEP, we have applied DYNAMITE to identify TFs that are key regulators in human CD4+ T cell differentiation. Our method highlighted several TFs as regulators for these transitions, including FOXP1, which was experimentally validated to discriminate naive T cells from effector memory cells.
Le Pubblicazioni scientifiche Open Access come strumento per la crescita professionale a beneficio dei cittadini
Creators: name: Alemanno, Antonio
name: Urietti, Simone
name: Vernone, Annamaria
name: Coriasco, Mario
name: Rabellino, Sergio
name: Sellitti, Francesco Paolo
Publisher: name: Journal of Biomedical Practitioners
Year: 2017
Subjects: Open access; multiprofessionale; multidisciplinare; pubblicazioni scientifiche.

description: La divulgazione dei prodotti della ricerca scientifica costituisce uno strumento fondamentale per la crescita culturale e professionale di tutte le categorie di professionisti: essa contribuisce sensibilmente allo scambio e all'arricchimento dei saperi, con conseguente miglioramento delle prestazioni svolte dai professionisti a tutto vantaggio dei cittadini.
Con questi presupposti e con queste finalità abbiamo dato vita a JBP – Journal of biomedical practitioners, rivista periodica, peer reviewed, a carattere tecnico-scientifico-professionale, rivolta alle professioni dell’area biomedica.
Considerato che in Italia le riviste scientifiche di tipo multiprofessionale e interdisciplinare a divulgazione prevalentemente in lingua italiana non sono particolarmente numerose, JBP si inserisce in questo contesto con il proposito di favorire la comunicazione, l’integrazione e la cooperazione fra le diverse professioni biomediche, mediante la condivisione di contenuti tecnico-scientifico-professionali e di un comune orizzonte etico.
JBP vuole anche essere un “luogo” di incontro e di scambio di esperienze fra professionisti che svolgono la propria attività in tutti gli ambiti delle Scienze Biomediche con finalità assistenziali, diagnostico-terapeutiche, riabilitative e di prevenzione, sia in ambito della ricerca di base che in quella clinica.
Per questo motivo la rivista è Open Access, quindi leggibile da tutti senza abbonamento, proprio per venire incontro alle comunità professionali che spesso operano al di fuori di una istituzione che può permettersi di pagare ogni anno migliaia di euro in abbonamenti.
Alla rivista scientifica abbiamo voluto associare una sezione Books con una “Collana JBP-Library” dedicata alla pubblicazione di manuali e monografie, Open Access anche questi, a carattere tecnico-scientifico-professionale con finalità didattiche e/o di approfondimento in settori scientifico-disciplinari specifici.
JBP, coerentemente con le finalità dichiarate e per consentire l’accesso ai contenuti della rivista a tutti, utilizza per la pubblicazione degli articoli EasyReading®font come “…valido strumento compensativo per i lettori con dislessia e font facilitante per tutte le categorie di lettori” (Bachmann, 2013). Si ringrazia la Easyreading Multimedia S.r.l. per la disponibilità e l'autorizzazione all'utilizzo del font.
description: Journal of Biomedical Practitioners, V. 1, N. 1 (2017)
Additional file 3 of Genomic divergence and demographic history of Quercus aliena populations
Creators: name: Han, Biao
name: Tong, Boqiang
name: Zhang, Jiliang
name: Bu, Ziheng
name: Zhao, Lijun
name: Xian, Yang
name: Li, Dezhu
name: Xie, Xiaoman
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology

description: Additional file 3: Figure S3. Principal component analysis (PCA) of Q. aliena based on chloroplast genomes. The first two principal components (PC1 and PC2) explained 18.84% and 13.83% of the total variance, respectively.
Preliminary observations on scleral ossicles in performing functionalized 3D vascularized scaffolds for “critical-size” bone defect healing
Creators: name: Checchi, Marta
name: Smargiassi, Alberto
name: Ferretti, Marzia
name: Sena, Paola
name: Benincasa, Marta
name: Cavani, Francesco
name: Sola, Marco
name: Ranieri, Antonio
name: Mitola, Stefania
name: Palumbo, Carla
Publisher: name: Firenze University Press
Year: 2017
Subjects: Scleral ossicles; primary endothelial cells; immortalized osteogenic cells; bone scaffold

description: The problem of “critical-size” bone defects occurs when a severe lesion is difficult to be self-recovered. Many strategies of regenerative medicine were used in the last decade, with translational approaches, to mimic both structure and function of the native bone tissue, making use of synthetic materials, nanotechnologies, bio/synthetic constructs or some of their combination. The main obstacle to engineering strategies is mostly due to the lack of a proper vascularization of the construct used. In this feasibility study, our attention is directed towards the main tissue engineering items: scaffolds, cells and conditioning factors. We propose the use of scleral ossicles of lower vertebrates (1), as natural scaffolds which will be functionalized to allow the best adhesion of endothelial cells along a geometrically controlled pattern on the bony surface of the construct; successively, on the functionalized scaffold, osteogenic cell lines will be cultured. In the preliminary phases of the study, the ossicles were scratched to remove soft tissue residues, variously flattened with different methods to reach a regular morphology on both sides, and finally autoclaved to eliminate cellular remnants and to annul antigenic properties. Ossicles were observed under SEM and subjected to micro-assay, to establish the best scaffold preparation and to characterize morphological properties more suitable for engineering phases. Functionalization will be made by immobilizing on the engineered ossicles specific growth factors for endothelial cells; later, mouse primary lung endothelial cells (ECs) and immortalized osteogenic cells (IDG-SW3) will be used. As expected results ECs should adhere to the ossicle surface and organize to form lumenized microvascular-like structures; later, supported by the vascular-like network, the osteogenic lineage should produce bone matrix on the construct. The production of newly-formed bone around vascular-like buds will be verify. 3D tissue constructs generated in vitro will be used in successive in vivo study for the healing of “critical-size” bone defects experimentally induced in mice.
description: Italian Journal of Anatomy and Embryology, Vol. 121, No. 1 (Supplement) 2016
Archaeological rescue excavations in Hargla old parish cemetery.
Creators: name: Malve, Martin
name: Roog, Raido
name: Lillak, Anti
name: Limbo-Simovart, Jana
Publisher: name: Arheoloogilised Välitööd Eestis
Year: 2025

description: Archaeological rescue excavations in Hargla old parish cemetery.
description: Arheoloogilised Välitööd Eestis, 2011
sj-pdf-1-imr-10.1177_03000605221119366 - Supplemental material for Time from symptom onset to severe COVID-19 and risk factors among patients in Southern Ethiopia: a survival analysis
Creators: name: Sisay, Gizaw
name: Mantefardo, Bahru
name: Beyene, Aster
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 111708 Health and Community Services
subject: FOS: Health sciences
subject: Cardiology
subject: 110599 Dentistry not elsewhere classified
subject: FOS: Clinical medicine
subject: 110305 Emergency Medicine
subject: 110306 Endocrinology
subject: 110308 Geriatrics and Gerontology
subject: 110904 Neurology and Neuromuscular Diseases
subject: 111099 Nursing not elsewhere classified
subject: 111199 Nutrition and Dietetics not elsewhere classified
subject: 111299 Oncology and Carcinogenesis not elsewhere classified
subject: 110314 Orthopaedics
subject: 110604 Sports Medicine
subject: 110315 Otorhinolaryngology
subject: 111702 Aged Health Care
subject: 111403 Paediatrics
subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: 111799 Public Health and Health Services not elsewhere classified
subject: 110203 Respiratory Diseases
subject: 160807 Sociological Methodology and Research Methods
subject: FOS: Sociology
subject: 110323 Surgery

description: Supplemental material, sj-pdf-1-imr-10.1177_03000605221119366 for Time from symptom onset to severe COVID-19 and risk factors among patients in Southern Ethiopia: a survival analysis by Gizaw Sisay, Bahru Mantefardo and Aster Beyene in Journal of International Medical Research
Archaeological studies in Risti church and churchyard
Creators: name: Kadakas, Villu
name: Tooming, Kaire
name: Kiudsoo, Mauri
name: Kilumets, Juhan
Publisher: name: Arheoloogilised Välitööd Eestis
Year: 2025

description: Archaeological studies in Risti church and churchyard
description: Arheoloogilised Välitööd Eestis, 2011
title: MiFID, WAG 2007
Creators: name: Widerhofer, Erwin
Year: 2008

description: Market in Financial Instruments Directive, kurz MiFID, ist eine EU-Richtliche, die eine tiefgreifende Änderung des Wertpapieraufsichtsgesetzes in Österreich zufolge hatte. Das neue Wertpapieraufsichtsgesetz (WAG, 2007) muss nun den Vorgaben dieser Richtlinie entsprechen. In Österreich wurde das WAG 2007 am 6. Juli 2007 vom Nationalrat verabschiedet und ist mit 1. November 2007 in Kraft getreten. Die wichtigsten Änderungen durch die MiFID bzw. deren wesentlichen Inhalte werden in dieser Arbeit erörtert. Zunächst wird beschrieben, warum die MiFID eingeführt wurde und was ihre wesentlichen Ziele sind. Dies ist zum einen, dass es erstmals eine Einteilung der Kunden geben muss, dass die Schutzbestimmungen für Kunden verschärft werden, Informationen verständlicher und umfangreicher ausfallen müssen und dass der Kunde über alle Arten von Risiko aufgeklärt werden muss. Um das WAG 2007 aber verstehen zu können, muss man wissen, wo deren Wurzeln liegen. Daher wird auf die europarechtlichen Grundlagen der MiFID eingegangen, in groben Zügen die Entstehung der MiFID im Rahmen des Aktionsplan Finanzdienstleistungen (FSAP) erläutert und skizziert, wie es dann zu den einzelnen Gesetzen in den Ländern der EU kommt. Außerdem werden der Anwendungsbereich des WAG 2007 und die Bestimmungen, wie mit Interessenkonflikten und Anreizen umzugehen ist, anhand von Gesetzestexten und Kommentaren erklärt. Da die Implemetierung einer neuen Richtlinie und die Verabschiedung eines neuen Gesetzes selten reibungslos verläuft, wird auch erwähnt, wo es zu Problemen bei der Umsetzung der MiFID gekommen ist und welche Bestimmungen noch verbesserbar wären oder noch nicht ausgereift sind. Trotz dieser Kritikpunkte handelt es sich bei der MiFID um eine der größten europaweiten Veränderungen auf einem Rechtsgebiet, die ein wichtiger und großer Schritt zu einem einheitlichen europaweiten Finanzplatz war.
Osteological analysis of human remains from the cemeteries of St Alexander Nevsky Russian garrison and St Nicholas church, Pärnu
Creators: name: Malve, Martin
Publisher: name: Arheoloogilised Välitööd Eestis
Year: 2025

description: Osteological analysis of human remains from the cemeteries of St Alexander Nevsky Russian garrison and St Nicholas church, Pärnu
description: Arheoloogilised Välitööd Eestis, 2011
Investigations on the territory of the Medieval New-Pärnu
Creators: name: Heinloo, Eero
name: Vissak, Rünno
Publisher: name: Arheoloogilised Välitööd Eestis
Year: 2025

description: Investigations on the territory of the Medieval New-Pärnu
description: Arheoloogilised Välitööd Eestis, 2011
Supplemental Material - Predictors of Health-Protective and Prosocial Behaviors during the Covid-19 Pandemic: The Role of Social Support and Resilience
Creators: name: Fontes, Andrea
name: Pereira, Cícero Roberto
name: Menezes, Sofia
name: Soares, Antonio
name: Almeida, Pedro
name: Carvalho, Geórgia
name: Arriaga, Patrícia
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental Material for Predictors of Health-Protective and Prosocial Behaviors during the Covid-19 Pandemic: The Role of Social Support and Resilience by Andrea Fontes, Cícero Pereira, Sofia Menezes, Antonio Soares, Pedro Almeida, Geórgia Carvalho, and Patrícia Arriaga in Psychological Reports
Rotylenchulus reniformis Linford and Oliveira 1940
Creators: name: Gordon, Kara L
name: Schrimsher, Drew W
name: Lawrence, Kathy S
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Nematoda
Chromadorea
Rhabditida
Rotylenchulidae
Rotylenchulus
Rotylenchulus reniformis

description: Rotylenchulus reniformis field evaluation   At TVREC, the combination of a nematicide ST + (NH4)2SO4 + Vydate® C-LV + Max-In® Sulfur at PHS was the most effective at increasing root fresh weight from sample data combined at PHS + FB. A nematicide ST + (NH4)2SO4 + Vydate® C-LV + Max-In® Sulfur at PHS and FB had the lowest R. reniformis eggs per gram of root, closely followed by the combination of a nematicide ST + (NH4)2SO4 + Vydate® C-LV at PHS. These findings are supported by Badra and Elgindi (1979), where foliar applications of Vydate® C-LV significantly reduced R. reniformis population levels. Similarly, the use of a nematicide ST COPeO™ Prime (Fluopyram) inhibited R. reniformis from increasing on cotton root systems (Faske and Hurd, 2015). The combination that supported the largest lint yield was a nematicide ST + (NH4)2SO4 + Vydate® C-LV at PHS. Nematicide applications were analyzed individually in response to lint yield. An application of a nematicide ST increased overall yield by 11%. A trial conducted by Groover et al. (2020) supports this conclusion and found that a nematicide ST (COPeO™ Prime) increased lint yield by 14%. A single foliar application of Vydate® C-LV increased overall lint yield by 13%, while two applications of Vydate® C-LV increased overall lint yield by 2%. Increases in yield with single or multiple Vydate® C-LV applications on cotton were also found in a study conducted by Hammes et al. (1999).
 The combination with the largest mean profit in dollars/ha was a nematicide ST + (NH4)2SO4 + Vydate® C-LV at PHS. This combination also supported the largest lint yield. Based on the lower and upper profits, there is a 90% chance when using this fertilizer and nematicide combination in a R. reniformis infested field, the mean profit will fall between $991.15/ha and $1360.59/ha. The increased mean profit of this combination could be contingent on the moderate fertilizer and nematicide input costs. The overall input cost of this combination was $55.96/ha which was $46.17 cheaper than the most expensive (NH4)2SO4 based combination. This evaluation is supported by Zimet et al. (2002) who reported financial returns in R. reniformis fields with lower chemical rates equating to reduced chemical input costs. Similarly, a study conducted by Koenning et al. (2007) saw an increase in yield with the use of nematicides in R. reniformis infested fields but when conducting an economic analysis determined the profit from the additional yield did not cover the increased chemical costs.
description: Published as part of Gordon, Kara L, Schrimsher, Drew W & Lawrence, Kathy S, 2022, Additional fertilizer and nematicide combinations on upland cotton to manage Rotylenchulus reniformis and Meloidogyne incognita in Alabama, pp. 1-15 in Journal of Nematology 54 (1) on page 12, DOI: 10.21307/jofnem-2022-003, http://zenodo.org/record/11644663
Wavefunction branching: when you can't tell pure states from mixed states
Creators: name: Taylor, Jordan K.
name: McCulloch, Ian P.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Physics (quant-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We propose a definition of wavefunction "branchings": quantum superpositions which can't be feasibly distinguished from the corresponding mixed state, even under time evolution. Our definition is largely independent of interpretations, requiring only that it takes many more local gates to swap branches than to distinguish them. We give several examples of states admitting such branch decompositions. Under our definition, we argue that attempts to get relative-phase information between branches will fail without frequent active error correction, that branches are effectively the opposite of good error-correcting codes, that branches effectively only grow further apart in time under natural evolution, that branches tend to absorb spatial entanglement, that branching is stronger in the presence of conserved quantities, and that branching implies effective irreversibility. Identifying these branch decompositions in many-body quantum states could shed light on the emergence of classicality, provide a metric for experimental tests at the quantum/ classical boundary, and allow for longer numerical time evolution simulations. We see this work as a generalization of the basic ideas of environmentally-induced decoherence to situations with no clear system/ environment split.
description: 20 pages, 9 figures; Published version with significant updates
sj-docx-2-icp-10.1177_20534345221121068 - Supplemental material for Approaches to reducing fragmented care in systemic lupus erythematosus (SLE) and other multimorbid conditions: A realist review
Creators: name: Sumpter, IJ
name: Phillips, SM
name: Magwood, GS
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 111708 Health and Community Services
subject: FOS: Health sciences

description: Supplemental material, sj-docx-2-icp-10.1177_20534345221121068 for Approaches to reducing fragmented care in systemic lupus erythematosus (SLE) and other multimorbid conditions: A realist review by IJ Sumpter, SM Phillips and GS Magwood in International Journal of Care Coordination
Additional file 4 of Genomic divergence and demographic history of Quercus aliena populations
Creators: name: Han, Biao
name: Tong, Boqiang
name: Zhang, Jiliang
name: Bu, Ziheng
name: Zhao, Lijun
name: Xian, Yang
name: Li, Dezhu
name: Xie, Xiaoman
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology

description: Additional file 4: Figure S4. The geographical distribution of 18 populations of Q. aliena. Pie charts show the ancestry composition of each population for K = 3 based on Admixture results of chloroplast genome. The elevation distribution map in the background was obtained from WorldClim ( https://worldclim.org/ ).
sj-docx-1-cdq-10.1177_15257401221119969 – Supplemental material for Professional Training and Therapeutic Resources Needed for the Adoption of Telepractice in the Philippines
Creators: name: Lentejas, Kembell Gaw
name: Lam, Joseph Hin Yan
name: Tong, Shelley Xiuli
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: Education
subject: 200399 Language Studies not elsewhere classified
subject: FOS: Languages and literature
subject: 130312 Special Education and Disability
subject: FOS: Educational sciences

description: Supplemental material, sj-docx-1-cdq-10.1177_15257401221119969 for Professional Training and Therapeutic Resources Needed for the Adoption of Telepractice in the Philippines by Kembell Gaw Lentejas, Joseph Hin Yan Lam and Shelley Xiuli Tong in Communication Disorders Quarterly
Dependent rounding with strong negative-correlation, and scheduling on unrelated machines to minimize completion time
Creators: name: Harris, David G.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Data Structures and Algorithms (cs.DS)
subject: FOS: Computer and information sciences

description: We describe a new dependent-rounding algorithmic framework for bipartite graphs. Given a fractional assignment $\vec x$ of values to edges of graph $G = (U \cup V, E)$, the algorithms return an integral solution $\vec X$ such that each right-node $v \in V$ has at most one neighboring edge $f$ with $X_f = 1$, and where the variables $X_e$ also satisfy broad nonpositive-correlation properties. In particular, for any edges $e_1, e_2$ sharing a left-node $u \in U$, the variables $X_{e_1}, X_{e_2}$ have strong negative-correlation properties, i.e. the expectation of $X_{e_1} X_{e_2}$ is significantly below $x_{e_1} x_{e_2}$.
 This algorithm is based on generating negatively-correlated Exponential random variables and using them in a contention-resolution scheme inspired by an algorithm Im & Shadloo (2020). Our algorithm gives stronger and much more flexible negative correlation properties.
 Dependent rounding schemes with negative correlation properties have been used for approximation algorithms for job-scheduling on unrelated machines to minimize weighted completion times (Bansal, Srinivasan, & Svensson (2021), Im & Shadloo (2020), Im & Li (2023)). Using our new dependent-rounding algorithm, among other improvements, we obtain a $1.398$-approximation for this problem. This significantly improves over the prior $1.45$-approximation ratio of Im & Li (2023).
Supplemental Material - The Effects of Incumbent-Aligned Terrorism and Voting Behavior: Evidence from Argentina’s 1973 Elections
Creators: name: Edwards, Pearce
name: Pierson, Patrick
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 220104 Human Rights and Justice Issues
subject: FOS: Philosophy, ethics and religion
subject: 160607 International Relations
subject: FOS: Political science

description: Supplemental Material for The Effects of Incumbent-Aligned Terrorism and Voting Behavior: Evidence from Argentina’s 1973 Elections by Pearce Edwards and Patrick Pierson in Journal of Conflict Resolution
Supplemental Material - Social Mobility and Sense of Purpose From Midlife to Old Age: Examining the Role of Major Life Events
Creators: name: Lee, Chioun
name: Sain, Debaleena
name: Harari, Lexi
name: Kürüm, Esra
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 110308 Geriatrics and Gerontology
subject: FOS: Clinical medicine
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental Material for Social Mobility and Sense of Purpose From Midlife to Old Age: Examining the Role of Major Life Events by Chioun Lee, Debaleena Sain, Lexi Harari, and Esra Kurum in Research on Aging
title: Zur Effizienz und Effektivität von Rettungsorganisationen am Beispiel Wien
Creators: name: Frankl, Maximilian
Year: 2008

description: Die Arbeit ist eine Bedarfsstudie zum Wiener Notfallrettungswesen. Es wird auf die geschichtliche Entwicklung der einzelnen beteiligten Organisationen eingegangen. Die Einsatzzahlen und deren Verteilung nach Schweregrad der letzten sieben Jahre werden analysiert um aus ihnen einen Rückschluss auf die optimale Anzahl an Einsatzfahrzeugen für Wien ziehen zu können. Das Ergebnis zeigt, dass Wien gemessen an einem international gültigen EU-Schlüssel zu wenige Fahrzeuge im Notfallrettungswesen einsetzt, das System aber trotzdem sehr gut funktioniert.
sj-docx-1-spo-10.1177_17479541221122430 - Supplemental material for Construction and validation of the German coach-rating scale to assess achievement-motivated behavior in team sports (AMBIS-T)
Creators: name: Zuber, Claudia
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: Sociology
subject: FOS: Sociology

description: Supplemental material, sj-docx-1-spo-10.1177_17479541221122430 for Construction and validation of the German coach-rating scale to assess achievement-motivated behavior in team sports (AMBIS-T) by Claudia Zuber in International Journal of Sports Science & Coaching
Preliminary results of the rescue excavation in St Mary’s churchyard and its surroundings in Tartu 2010-2011
Creators: name: Malve, Martin
name: Roog, Raido
name: Tvauri, Andres
Publisher: name: Arheoloogilised Välitööd Eestis
Year: 2025

description: Preliminary results of the rescue excavation in St Mary’s churchyard and its surroundings in Tartu 2010-2011
description: Arheoloogilised Välitööd Eestis, 2011
sj-docx-1-mso-10.1177_20552173221116282 - Supplemental material for Work difficulties in people with multiple sclerosis: The role of anxiety, depression and coping
Creators: name: van Egmond, EEA
name: van der Hiele, K
name: van Gorp, DAM
name: Jongen, PJ
name: van der Klink, JJL
name: Reneman, MF
name: Beenakker, EAC
name: van Eijk, JJJ
name: Frequin, STFM
name: de Gans, K
name: van Geel, BM
name: Gerlach, OHH
name: Hengstman, GJD
name: Mostert, JP
name: Verhagen, WIM
name: Middelkoop, HAM
name: Visser, LH
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: Neuroscience

description: Supplemental material, sj-docx-1-mso-10.1177_20552173221116282 for Work difficulties in people with multiple sclerosis: The role of anxiety, depression and coping by EEA van Egmond, K van der Hiele, DAM van Gorp, PJ Jongen, JJL van der Klink, MF Reneman, EAC Beenakker, JJJ van Eijk, STFM Frequin, K de Gans, BM van Geel, OHH Gerlach, GJD Hengstman, JP Mostert, WIM Verhagen, HAM Middelkoop and LH Visser in Multiple Sclerosis Journal – Experimental, Translational and Clinical
Preliminary archaeological investigations in the area of the medieval and post-medieval harbour of Tallinn
Creators: name: Nurk, Ragnar
name: Kadakas, Villu
name: Toos, Guido
Publisher: name: Arheoloogilised Välitööd Eestis
Year: 2025

description: Preliminary archaeological investigations in the area of the medieval and post-medieval harbour of Tallinn
description: Arheoloogilised Välitööd Eestis, 2011
title: Die verfassungs- und gemeinschaftsrechtlichen Aspekte der Besteuerung von Erbschaften
Creators: name: Schmid, Astrid
Year: 2008

description: Die Arbeit beginnt mit den Grundlagen des Erbschafts- und Schenkungssteuergesetzes. In weiterer Folge wird ermittelt, anhand von Entscheidungen, warum die Erbschafts- und Schenkungssteuer als verfassungswidrig aufgehoben wurde. Im zweiten Teil, werden anhand von Urteilen die Gemeinschaftswidrigkeiten einiger Bestimmungen des Erbschafts- und Schenkungssteuergesetzes aufgezeigt.
Recent studies in Kuressaare bishop’s castle
Creators: name: Püüa, Garel
name: Kadakas, Villu
name: Toos, Guido
name: Nurk, Ragnar
Publisher: name: Arheoloogilised Välitööd Eestis
Year: 2025

description: Recent studies in Kuressaare bishop’s castle
description: Arheoloogilised Välitööd Eestis, 2011
Archaeozoological evidence from the Padise monastery
Creators: name: Lõugas, Lembi
name: Maldre, Liina
name: Tomek, Teresa
name: Kadakas, Villu
Publisher: name: Arheoloogilised Välitööd Eestis
Year: 2025

description: Archaeozoological evidence from the Padise monastery
description: Arheoloogilised Välitööd Eestis, 2011
Additional file 3 of Genome-wide analysis of the Tritipyrum NAC gene family and the response of TtNAC477 in salt tolerance
Creators: name: Liu, Xiaojuan
name: Zhou, Guangyi
name: Chen, Songshu
name: Jia, Zhenzhen
name: Zhang, Suqin
name: He, Fang
name: Ren, Mingjian
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 3: Fig.s1. Phylogenetic trees of NAC gene family in Tritipyrum and A. thaliana.