cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Supercatalysis
Creators: name: Bandyopadhyay, Somshubhro
name: Roychowdhury, Vwani
Publisher: name: arXiv
Year: 2001
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We show that entanglement-assisted transformations of bipartite entangled states can be more efficient than catalysis [D. Jonathan and M. B. Plenio, Phys. Rev. Lett. 83, 3566 (1999)}, i.e., given two incomparable bipartite states not only can the transformation be enabled by performing collective operations with an auxiliary entangled state, but the entanglement of the auxiliary state itself can be enhanced. We refer to this phenomenon as supercatalysis. We provide results on the properties of supercatalysis and its relationship with catalysis. In particular, we obtain a useful necessary and sufficient condition for catalysis, provide several sufficient conditions for supercatalysis and study the extent to which entanglement of the auxiliary state can be enhanced via supercatalysis.
description: Latex, 5 pages
Additional file 2 of Genome-wide analysis of TALE superfamily in Triticum aestivum reveals TaKNOX11-A is involved in abiotic stress response
Creators: name: Han, Yuxuan
name: Zhang, Lili
name: Yan, Luyu
name: Xiong, Xinxin
name: Wang, Wenjing
name: Zhang, Xiao-Hong
name: Min, Dong-Hong
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 2: Figure S2. Protein–protein interaction network of wheat TALE proteins.
Ειδήσεις: Παναγιώτης Κ. Κανελλόπουλος ( 1902-1986 )
Creators: name: Μούκανος, Δημήτριος
Publisher: name: Ελληνική Φιλοσοφική Επιθεώρηση
Year: 2012
Subjects: philosophy

description: Ελληνική Φιλοσοφική Επιθεώρηση, Vol 4, No 10 (1987)
A minimal G$\bar{\textrm{o}}$-model for rebuilding whole genome structures from haploid single-cell Hi-C data
Creators: name: Wettermann, S.
name: Brems, M.
name: Siebert, J. T.
name: Vu, G. T.
name: Stevens, T. J.
name: Virnau, P.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We present a minimal computational model, which allows very fast, on-the-fly construction of three dimensional haploid interphase genomes from single cell Hi-C contact maps using the HOOMD-blue molecular dynamics package on graphics processing units. Chromosomes are represented by a string of connected beads, each of which corresponds to 100,000 base pairs, and contacts are mediated via a structure-based harmonic potential. We suggest and test two minimization protocols which consistently fold into conformationally similar low energy states. The latter are similar to previously published structures but are calculated in a fraction of the time. We find evidence that mere fulfillment of contact maps is insufficient to create experimentally relevant structures. Particularly, an excluded volume term is required in our model to induce the formation of chromosome territories. We also observe empirically that contact maps do not capture the chirality of the underlying structures. Depending on starting configurations and protocol details, one of two mirror images emerges. Finally, we analyze the occurrence of knots in a particular chromosome. The same knot appears in (almost) all structures irrespective of minimization protocols or even details of underlying potentials providing further evidence for the existence of knots in interphase chromatin.
description: 18 pages, 7 figures. The updated submission contains additional explanations (for example) to the Go model and why we use this in the context of chromatin, we address the stopping criterion. References have been added as a result to an email received pointing us to publications we had not read before
Othius caecitubus ASSING 2003
Creators: name: Assing, Volker
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Othius
Othius caecitubus

description: Othius caecitubus ASSING, 2003
M a t e r i a l e x a m i n e d: Nepal: 13, Kaski, S-Annapurna, Seti Khola valley, above Kabre, 28°22'N, 84°00'E, 2500 m, 9.IX.2013, leg. Hagge & Schmidt (NME).
C o m m e n t: The above specimen represents the first records since the original description, which is based on material from several localities in the Annapurna range in Nepal (ASSING 2003b).
description: Published as part of Assing, Volker, 2015, A revision of Othiini. XIX. Two new species of Othius, the first record of the genus from Vietnam, and additional records (Coleoptera: Staphylinidae: Staphylininae), pp. 1235-1250 in Linzer biologische Beiträge 47 (2) on pages 1238-1239, DOI: 10.5281/zenodo.5415927
Light Higgs bosons in the general NMSSM
Creators: name: Choi, Kiwoon
name: Im, Sang Hui
name: Jeong, Kwang Sik
name: Park, Chan Beom
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Physics beyond the Standard Model (SM) may manifest itself as small deviations from the SM predictions for Higgs signal strengths at 125 GeV. Then, a plausible and interesting possibility is that the Higgs sector is extended and at the weak scale there appears an additional Higgs boson weakly coupled to the SM sector. Combined with the LEP excess in $e^+e^-\to Z(h\to b\bar b)$, the diphoton excess around 96 GeV recently reported by CMS may suggest such a possibility. We examine if those LEP and CMS excesses can be explained simultaneously by a singlet-like Higgs boson in the general next-to-minimal supersymmetric Standard Model (NMSSM). Higgs mixing in the NMSSM relies on the singlet coupling to the MSSM Higgs doublets and the higgsino mass parameter, and thus is subject to the constraints on these supersymmetric parameters. We find that the NMSSM can account for both the LEP and CMS excesses at 96 GeV while accommodating the observed 125 GeV SM-like Higgs boson. Interestingly, the required mixing angles constrain the heavy doublet Higgs boson to be heavier than about 500 GeV. We also show that the viable region of mixing parameter space is considerably modified if the higgsino mass parameter is around the weak scale, mainly because of the Higgs coupling to photons induced by the charged higgsinos.
description: 1+16 pages, 4 figures, title changed, analyses improved, references added, matches journal version
Entangled qutrits violate local realism stronger than qubits - an analytical proof
Creators: name: Chen, Jing-Ling
name: Kaszlikowski, Dagomir
name: Kwek, L. C.
name: Zukowski, Marek
name: Oh, C. H.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: In Kaszlikowski [Phys. Rev. Lett. {\bf 85}, 4418 (2000)], it has been shown numerically that the violation of local realism for two maximally entangled $N$-dimensional ($3 \leq N$) quantum objects is stronger than for two maximally entangled qubits and grows with $N$. In this paper we present the analytical proof of this fact for N=3.
description: 5 pages
ОСОБЕННОСТИ ПОРАЖЕНИЯ ВЕРХНИХ ОТДЕЛОВ ЖЕЛУДОЧНО-КИШЕЧНОГО ТРАКТА У БОЛЬНЫХ ХРОНИЧЕСКОЙ БОЛЕЗНЬЮ ПОЧЕК
Creators: name: Муминов, Д.К.
name: Кодиров, Б.Б.
Publisher: name: Zenodo
Year: 2024

description: Гастропарез — это хроническая задержка опорожнения желудка, не связанная с механическим препятствием, приводящая к задержке пищи и растягиванию стенок желудка. Исследования, изучающие нарушение моторики ЖКТ у пациентов с ТПН, продемонстрировали высокую частоту задержки опорожнения желудка у пациентов с хронической почечной недостаточностью.
Aderaeon hamatum KASPARYAN 1971
Creators: name: Ghahari, H.
name: Jussila, R.
name: I, Northwestern
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Ichneumonidae
Aderaeon
Aderaeon hamatum

description: Aderaeon hamatum KASPARYAN 1971
M a t e r i a l: West Azarbaijan province: Mahabad, 1, 29 April 2008.
D i s t r i b u t i o n o u t s i d e I r a n: Ukraine,southernpartofEuropeanRussia, Azerbaijan, Georgia, Turkey and Armenia.
description: Published as part of Ghahari, H., Jussila, R. & I, Northwestern, 2011, A contribution to the knowledge of Ichneumon wasps (Hymenoptera: Ichneumonoidea: Ichneumonidae) from West Azarbaijan Province, Northwestern Iran, pp. 1277-1284 in Linzer biologische Beiträge 43 (2) on page 1281, DOI: 10.5281/zenodo.5326339
Covariant model for proton-proton bremsstrahlung: Comparison with high-precision data
Creators: name: Cozma, M. D.
name: Martinus, G. H.
name: Scholten, O.
name: Timmermans, R. G. E.
name: Tjon, J. A.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We compare a relativistic covariant model for proton-proton bremsstrahlung with high-quality data from KVI. The agreement in large parts of phase space is satisfactory. However, remarkably large discrepancies are observed for specific kinematic regions. These failures are shown to occur primarily when the final two-nucleon system has energies less than about 15 MeV.
description: 9 pages, 4 figures; Accepted for publication in Physical Review C
Ειδήσεις: Νίκος Νησιώτης ( 1925-1986 )
Creators: name: Θεοδώρου, Ευάγγελος
Publisher: name: Ελληνική Φιλοσοφική Επιθεώρηση
Year: 2012
Subjects: philosophy

description: Ελληνική Φιλοσοφική Επιθεώρηση, Vol 4, No 10 (1987)
title: A phenomenological study of the lived experience of underachieving, gifted, early adolescents
Creators: name: Prince, Carolyn E
Publisher: name: Griffith University
Year: 2022
Subjects: subject: giftedness
subject: education
subject: underachievement

description: Gifted learners have the potential to make important contributions to society as they grow and develop. During formal primary and secondary education, however, the prevalence of underachievement for this group appears to be growing. Despite significant research into the phenomenon, there is limited consideration of the voices of intellectually gifted, early adolescent students and their lived experience of underachievement. This research aimed to answer the question, "What are the lived experiences of intellectually gifted early adolescents with regards to underachievement in formal school settings in South-East Queensland?". Employing a descriptive phenomenological methodology, this research used semi-structured interviews to engage with student participants and their caregiver/s to learn about underachievement as they had experienced and perceived it. Convenience sampling was employed to recruit six participants, five male and one female, who were intellectually gifted early adolescents experiencing academic underachievement. Two interviews were conducted with each student participant, and one with their caregiver/s, for a total of 18 semi-structured interviews. Data analysis of the interview transcripts and subsequent textual-structural descriptions illuminated three themes common to the phenomenon of underachievement: (a) Personal Perceptions - how participants considered themselves and the way they operated in the school context; (b) Academic Experiences - how students experienced and evaluated their learning needs with respect to how these were being met within their classroom situations; and (c) Reflections on Underachievement - how students recognised and acknowledged their strengths and weaknesses and had these validated within their classroom situations. The key findings of this study include the need for educators, teachers, and policymakers to make pedagogical and structural shifts to better support the needs of intellectually gifted students, particularly with respect to providing appropriate and deliberate challenge and support, and further evidence for the categorisation of "selective consumers" either within or alongside underachievement.
Some Good Error-Correcting Codes from Algebraic-Geometric Codes
Creators: name: Chen, Hao
Publisher: name: arXiv
Year: 2001
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Algebraic-geometric codes on Garcia-Stichtenoth family of curves are used to construct the asymptotically good quantum codes.
description: 7 pages
Additional file 2: of The implementation of the Japanese Dental English core curriculum: active learning based on peer-teaching and learning activities
Creators: name: Rodis, Omar
name: Rozzano Locsin
Publisher: name: figshare
Year: 2019
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Principles of the Role Ply Activities (RPA). (DOCX 1478 kb)
Δελτίο Ελληνικής φιλοσοφικής βιβλιογραφίας
Creators: name: Τζαβάρας, Γιάννης
Publisher: name: Ελληνική Φιλοσοφική Επιθεώρηση
Year: 2012
Subjects: philosophy

description: Ελληνική Φιλοσοφική Επιθεώρηση, Vol 4, No 10 (1987)
Βιβλία που έλαβε η Ελληνική Φιλοσοφική Επιθεώρηση
Creators: name: -, -
Publisher: name: Ελληνική Φιλοσοφική Επιθεώρηση
Year: 2012
Subjects: philosophy

description: Ελληνική Φιλοσοφική Επιθεώρηση, Vol 4, No 10 (1987)
Additional file 4: of Metabolic and transcriptional analyses in response to potent inhibitors establish MEP pathway as major route for camptothecin biosynthesis in Nothapodytes nimmoniana (Graham) Mabb
Creators: name: Rather, Gulzar
name: Sharma, Arti
name: Jeelani, Syed
name: Misra, Prashant
name: Veenu Kaul
name: Surrinder Lattoo
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: LC/MS mass scan fosmidomycin treated plant tissue. (PDF 65 kb)
Othius hartmanni ASSING 2008
Creators: name: Assing, Volker
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Othius
Othius hartmanni

description: Othius hartmanni ASSING, 2008
M a t e r i a l e x a m i n e d: Nepal: 13, Mahakali province, Darchula district, 10 km NE Ghusa, 29°54'N, 80°57'E, 2850 m, 10.VI.2005, leg. Weigel (NME).
C o m m e n t: The original description of this recently described species is based on five specimens from a locality close to where the above male was collected (ASSING 2008).
description: Published as part of Assing, Volker, 2015, A revision of Othiini. XIX. Two new species of Othius, the first record of the genus from Vietnam, and additional records (Coleoptera: Staphylinidae: Staphylininae), pp. 1235-1250 in Linzer biologische Beiträge 47 (2) on page 1239, DOI: 10.5281/zenodo.5415927
ENVRI-FAIR D9.6: Marine subdomain EOV product specification
Creators: name: Carval, Thierry
name: Thijsse, Peter
name: Portier, Marc
name: Exter, Katrina
name: Pfeil, Benjamin
name: Pouliquen, Sylvie
name: Rodero, Ivan
name: Kokkinaki, Alexandra
name: Buck, Justin
name: Queric, Antoine
name: Harscoat, Valérie
Publisher: name: Zenodo
Year: 2021
Subjects: ENVRI-FAIR
FAIRness
deliverable
research infrastructures
European Open Science Cloud
EOSC
roadmap
marine subdomain

description: The overarching goal of ENVRI-FAIR is that all participating research infrastructures (RIs) will improve their FAIRness and become ready for connection of their data repositories and services to the European Open Science Cloud (EOSC). Deliverable 9.1 has reported on the roadmap of the RIs in the marine subdomain towards improving their FAIRness. It presented the approach of using FAIR questionnaires (together with WP5) to identify the strengths and weaknesses of each RI and a first indicative set of activities to improve identified weaknesses or gaps. After formulation in Deliverable D9.2 of implementation plans for mitigating these gaps during the next phase of the ENVRI-FAIR project, the RIs from the marine subdomain have specified in Deliverable D9.3 the technical services and interfaces to be implemented at RI level and have undertaken the implementation. The RI services will be demonstrated in D9.4 (M27) and will be operational for EOSC operations in D9.5 (M36). The present deliverable D9.6 is linked to Task 9.8 going from M24 to M48 and aiming to demonstrate the marine subdomain FAIRness. Here the This document D9.6 describes the technical specifications that will be necessary for the Marine EOV product Version 1 and Version 2 to run in 2021 and 2022.
Additional file 2 of Terminally exhausted CD8+ T cells contribute to age-dependent severity of respiratory virus infection
Creators: name: Parks, Olivia B.
name: Eddens, Taylor
name: Sojati, Jorna
name: Lan, Jie
name: Zhang, Yu
name: Oury, Tim D.
name: Ramsey, Manda
name: Erickson, John J.
name: Byersdorfer, Craig A.
name: Williams, John V.
Publisher: name: figshare
Year: 2023
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 2: Supplemental Figure 1. There was an increase in CD4+ T cells with CD8+ depletion. (A) Aged and young mice were treated with 300g CD8 or rat isotype control Ab one day prior to infection and 150g every other day post-infection via intraperitoneal injection. Representative flow plots from isotype control and CD8 treated on day 5 p.i. (B & C) There was an increase in CD4+ T cells by cell percent in both age groups at day 7 p.i. and an increase in CD4+ absolute cell number in aged CD8+ depleted mice. *P<0.05, **P<0.01, one-way ANOVA.
Additional file 1: of The implementation of the Japanese Dental English core curriculum: active learning based on peer-teaching and learning activities
Creators: name: Rodis, Omar
name: Rozzano Locsin
Publisher: name: figshare
Year: 2019
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Principles of the Student-Teacher Experience (STE). (DOCX 8494 kb)
Επιστημονικοί συνεργάτες και ανταποκριτές του περιοδικού - Πληροφορίες για το περιοδικό
Creators: name: -, -
Publisher: name: Ελληνική Φιλοσοφική Επιθεώρηση
Year: 2012
Subjects: philosophy

description: Ελληνική Φιλοσοφική Επιθεώρηση, Vol 4, No 10 (1987)
Dynamic winding number for exploring band topology
Creators: name: Zhu, Bo
name: Ke, Yongguan
name: Zhong, Honghua
name: Lee, Chaohong
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: Quantum Gases (cond-mat.quant-gas)
subject: FOS: Physical sciences

description: Topological invariants play a key role in the characterization of topological states. Due to the existence of exceptional points, it is a great challenge to detect topological invariants in non-Hermitian systems. We put forward a dynamic winding number, the winding of realistic observables in long-time average, for exploring band topology in both Hermitian and non-Hermitian two-band models via a unified approach. We build a concrete relation between dynamic winding numbers and conventional topological invariants. In one-dimension, the dynamical winding number directly gives the conventional winding number. In two-dimension, the Chern number relates to the weighted sum of dynamic winding numbers of all phase singularity points. This work opens a new avenue to measure topological invariants not requesting any prior knowledge of system topology via time-averaged spin textures.
description: 6+7 pages, 3+4 figures
ENVRI-FAIR D9.4: RIs implementation
Creators: name: Harscoat, Valérie
name: Carval, Thierry
Publisher: name: Zenodo
Year: 2021
Subjects: ENVRI-FAIR
deliverable
implementation
FAIRness
research infrastructures
EOSC
marine subdomain
data repositories
data services

description: The overarching goal of ENVRI-FAIR is that all participating research infrastructures (RIs) improve their FAIRness and become ready for connection of their data repositories and services to the European Open Science Cloud (EOSC). Deliverable 9.1 has reported on the roadmap of the RIs in the marine subdomain towards improving their FAIRness. It presented the approach of using FAIR questionnaires (together with WP5) to identify the strengths and weaknesses of each RI and a first indicative set of activities foreseen to improve identified weaknesses or gaps. After formulation in Deliverable D9.2 of implementation plans for mitigating these gaps during the next phase of the ENVRI-FAIR project, the RIs from the marine subdomain have specified in Deliverable D9.3 the technical services and interfaces to be implemented at RI level and have undertaken the implementation. The RI services are demonstrated in this deliverable D9.4 (M27) and will be operational for EOSC operations in D9.5 (M36).
Nonparametric Bayesian Topic Modelling with Auxiliary Data
Creators: name: Lim, Kar Wai
Publisher: name: The Australian National University
Year: 2016
Subjects: Bayesian nonparametric
topic modelling
hierarchical Pitman-Yor process

description: The intent of this dissertation in computer science is to study topic models for text analytics. The first objective of this dissertation is to incorporate auxiliary information present in text corpora to improve topic modelling for natural language processing (NLP) applications. The second objective of this dissertation is to extend existing topic models to employ state-of-the-art nonparametric Bayesian techniques for better modelling of text data. In particular, this dissertation focusses on: - incorporating hashtags, mentions, emoticons, and target-opinion dependency present in tweets, together with an external sentiment lexicon, to perform opinion mining or sentiment analysis on products and services; - leveraging abstracts, titles, authors, keywords, categorical labels, and the citation network to perform bibliographic analysis on research publications, using a supervised or semi-supervised topic model; and - employing the hierarchical Pitman-Yor process (HPYP) and the Gaussian process (GP) to jointly model text, hashtags, authors, and the follower network in tweets for corpora exploration and summarisation. In addition, we provide a framework for implementing arbitrary HPYP topic models to ease the development of our proposed topic models, made possible by modularising the Pitman-Yor processes. Through extensive experiments and qualitative assessment, we find that topic models fit better to the data as we utilise more auxiliary information and by employing the Bayesian nonparametric method.
The complex sine-Gordon model on a half line
Creators: name: Bowcock, P.
name: Tzamtzis, G.
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In this paper, we examine the complex sine-Gordon model in the presence of a boundary, and derive boundary conditions that preserve integrability. We present soliton and breather solutions, investigate the scattering of particles and solitons off the boundary and examine the existence of classical solutions corresponding to boundary bound states.
description: 32 pages, latex, 5 figures
Othius virgifer ASSING 1998
Creators: name: Assing, Volker
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Othius
Othius virgifer

description: Othius virgifer ASSING, 1998
M a t e r i a l e x a m i n e d: Nepal: 633, 3♀♀, Arun valley to Makalu, Bawala pass, 27°43'N, 87°15'E, 4100-4300 m, leg. Tamang (NME, cAss).
C o m m e n t: Previously, only the two type specimens from the eastern Makalu range were known (ASSING 1998).
description: Published as part of Assing, Volker, 2015, A revision of Othiini. XIX. Two new species of Othius, the first record of the genus from Vietnam, and additional records (Coleoptera: Staphylinidae: Staphylininae), pp. 1235-1250 in Linzer biologische Beiträge 47 (2) on page 1239, DOI: 10.5281/zenodo.5415927
Linear bounds for the normal covering number of the symmetric and alternating groups
Creators: name: Bubboloni, Daniela
name: Praeger, Cheryl E.
name: Spiga, Pablo
Publisher: name: arXiv
Year: 2019
Subjects: subject: Group Theory (math.GR)
subject: FOS: Mathematics
subject: 20B30, 20F05

description: The normal covering number $γ(G)$ of a finite, non-cyclic group $G$ is the minimum number of proper subgroups such that each element of $G$ lies in some conjugate of one of these subgroups. We find lower bounds linear in $n$ for $γ(S_n)$, when $n$ is even, and for $γ(A_n)$, when $n$ is odd.
Enhancing MD simulations: ASGARD’s automated analysis for GROMACS
Creators: name: Rodríguez-Martínez, Alejandro
name: Nelen, Jochem
name: Carmena-Bargueño, Miguel
name: Martínez-Cortés, Carlos
name: Luque, Irene
name: Pérez-Sánchez, Horacio
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biophysics
subject: Genetics
subject: FOS: Biological sciences
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified

description: Molecular Dynamics (MD) simulations are essential in analyzing the physical movement of molecules, with GROMACS being a widely recognized open-source package for this purpose. However, conducting analyses individually in GROMACS can take excessive time and effort. Addressing this challenge, we introduce ASGARD, an innovative workflow designed to streamline and automate the analysis of MD simulation of protein or protein-ligand complex. Unlike the traditional, manual approach, ASGARD enables researchers to generate comprehensive analyses with a single command line, significantly accelerating the research process and avoiding the laborious task of manual report generation. This tool automatically performs a range of analyses post-simulation, including system stability and flexibility assessments through RMSD Fluctuation and Distribution calculations. It further provides dynamic analysis using SASA, DSSP method graphs, and various interaction analyses. A key feature of ASGARD is its user-friendly design; it requires no additional installations or dependencies, making it highly accessible for researchers. In conclusion, ASGARD simplifies the MD simulation analysis process and substantially enhances efficiency and productivity in molecular research by providing an integrated, one-command analysis solution. Communicated by Ramaswamy H. Sarma
Additional file 3: of Metabolic and transcriptional analyses in response to potent inhibitors establish MEP pathway as major route for camptothecin biosynthesis in Nothapodytes nimmoniana (Graham) Mabb
Creators: name: Rather, Gulzar
name: Sharma, Arti
name: Jeelani, Syed
name: Misra, Prashant
name: Veenu Kaul
name: Surrinder Lattoo
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology

description: LC/MS mass scan of fosmidomycin standard. (PDF 271 kb)
ФАРҒОНА ВОДИЙСИДА ИҚТИСОДИЙ-ИЖТИМОИЙ МУНОСАБАТЛАР ВА БОШҚАРУВ МАСАЛАЛАРИНИНГ ТАҲЛИЛИ
Creators: name: Муминов, Бекзод
Publisher: name: Zenodo
Year: 2024

description: Фарғона водийсида олиб борилган археологик тадқиқотлар натижасида илк палеолит давридан тортиб то ўрта асрларгача бўлган даврларга оид бир неча юзлаб археологик ёдгорликлар топиб ўрганилган. Қадимги деҳқончилик ёдгорликлари асосан сой бўйларига жойлашган. Яъни, қадимги аҳоли тоғ олди этакларидаги булоқ бўйларида, дарё соҳилларидаги пастқам, суғорилиши осон жойларда деҳқончилик қилишга аста-секин ўта бошлаганлар. Ёдгорликларни сув манбалари асосида районлаштириш борасида А.Н.Бернштам, Б.А.Латынин, Ю.А.Заднепровский, Н.Г.Горбунова ва Б.Абдулгазиеваларнинг ишланмалари чуқур таҳлил қилинган.
Η συγκρότηση και η ανάπτυξη των εννοιών στο επιχείρημα του φιλοσικού σχετικισμού
Creators: name: Δημητρίου, Στέφανος
Publisher: name: Αξιολογικά
Year: 2012
Subjects: φιλοσοφία

description: Αξιολογικά, Τεύχος 15 (Μάϊος 2006)
Bohmian prediction about a two double-slit experiment and its disagreement with standard quantum mechanics
Creators: name: Golshani, M.
name: Akhavan, O.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The significance of proposals that can predict different results for standard and Bohmian quantum mechanics have been the subject of many discussions over the years. Here, we suggest a particular experiment (a two double-slit experiment) and a special detection process, that we call selective detection, to distinguish between the two theories. Using our suggested experiment, it is shown that the two theories predict different observable results at the individual level for a geometrically symmetric arrangement. However, their predictions are the same at the ensemble level. On the other hand, we have shown that at the statistical level, if we use our selective detection, then either the predictions of the two theories differ or where standard quantum mechanics is silent or vague, Bohmian quantum mechanics makes explicit predictions.
description: 9 pages, 1 figure
Topological quantum walks: theory and experiments
Creators: name: Wu, Jizhou
name: Zhang, Wei-Wei
name: Sanders, Barry C.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Inspired by recent breakthroughs with topological quantum materials, which pave the way to novel, high-efficiency, low-energy magnetoelectric devices and fault-tolerant quantum information processing, inter alia, topological quantum walks have emerged as an exciting topic in its own right, especially due to the theoretical and experimental simplifications this approach offers. Motivated by impressive progress in topological quantum walks, we provide a perspective on theoretical studies and experimental investigations of topological quantum walks focusing on current explorations of topological properties arising for single-walker quantum walks.
Φυσιοκρατία και κανονιστικότητα στην επιστήμη του David Hume
Creators: name: Πουρνάρη, Μαρία
Publisher: name: Αξιολογικά
Year: 2012
Subjects: φιλοσοφία

description: Αξιολογικά, Τεύχος 15 (Μάϊος 2006)
Erromenus plebejus
Creators: name: Ghahari, H.
name: Jussila, R.
name: I, Northwestern
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Ichneumonidae
Erromenus
Erromenus plebejus

description: Erromenus plebejus (WOLDSTEDT 1877)
M a t e r i a l: West Azarbaijan province: Piranshahr, 4, 30 August 2007.
D i s t r i b u t i o n o u t s i d e I r a n: Palaearctic region.
description: Published as part of Ghahari, H., Jussila, R. & I, Northwestern, 2011, A contribution to the knowledge of Ichneumon wasps (Hymenoptera: Ichneumonoidea: Ichneumonidae) from West Azarbaijan Province, Northwestern Iran, pp. 1277-1284 in Linzer biologische Beiträge 43 (2) on page 1282, DOI: 10.5281/zenodo.5326339
Palmira: A Deep Deformable Network for Instance Segmentation of Dense and Uneven Layouts in Handwritten Manuscripts
Creators: name: Sharan, S P
name: Aitha, Sowmya
name: Kumar, Amandeep
name: Trivedi, Abhishek
name: Augustine, Aaron
name: Sarvadevabhatla, Ravi Kiran
Publisher: name: Zenodo
Year: 2021

description: Pretrained model of Palmira on Indiscapes v2.
Additional file 2: of Metabolic and transcriptional analyses in response to potent inhibitors establish MEP pathway as major route for camptothecin biosynthesis in Nothapodytes nimmoniana (Graham) Mabb
Creators: name: Rather, Gulzar
name: Sharma, Arti
name: Jeelani, Syed
name: Misra, Prashant
name: Veenu Kaul
name: Surrinder Lattoo
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: LC/MS mass scan of lovastatin treated plant tissue. (PDF 65 kb)
Systematic Differences due to High Energy Hadronic Interaction Models in Air Shower Simulations in the 100 GeV-100 TeV Range
Creators: name: Parsons, R. D.
name: Schoorlemmer, H.
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The predictions of hadronic interaction models for cosmic-ray induced air showers contain inherent uncertainties due to limitations of available accelerator data and theoretical understanding in the required energy and rapidity regime. Differences between models are typically evaluated in the range appropriate for cosmic-ray air shower arrays ($10^{15}$-$10^{20}$ eV). However, accurate modelling of charged cosmic-ray measurements with ground based gamma-ray observatories is becoming more and more important. We assess the model predictions on the gross behaviour of measurable air shower parameters in the energy (0.1-100 TeV) and altitude ranges most appropriate for detection by ground-based gamma-ray observatories. We go on to investigate the particle distributions just after the first interaction point, to examine how differences in the micro-physics of the models may compound into differences in the gross air shower behaviour. Differences between the models above 1 TeV are typically less than 10%. However, we find the largest variation in particle densities at ground at the lowest energy tested (100 GeV), resulting from striking differences in the early stages of shower development.
description: 9 pages, 6 figures. Published by Phys Rev D
Η εγελιανή ερμηνεία του Σωκρατικού φιλοσοφείν
Creators: name: Ηλιόπουλος, Γιώργος Η.
Publisher: name: Αξιολογικά
Year: 2012
Subjects: φιλοσοφία

description: Αξιολογικά, Τεύχος 15 (Μάϊος 2006)
Additional file 6 of Terminally exhausted CD8+ T cells contribute to age-dependent severity of respiratory virus infection
Creators: name: Parks, Olivia B.
name: Eddens, Taylor
name: Sojati, Jorna
name: Lan, Jie
name: Zhang, Yu
name: Oury, Tim D.
name: Ramsey, Manda
name: Erickson, John J.
name: Byersdorfer, Craig A.
name: Williams, John V.
Publisher: name: figshare
Year: 2023
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 6: Supplemental Figure 5. No significant differences in donor T cell engraftment in transplant models. (A-C) Mice were bled by submandibular venipuncture 5 weeks post-irradiation and transplant. Lymphocytes were stained with congenic markers CD45.1 and CD45.2 to determine donor cell engraftment. Graph shows the relative frequencies of donor and recipient CD8+ T lymphocytes from peripheral blood, BAL, and lung, respectively. There was a difference in recipient cells remaining in aged and young hosts, but no signficant differences in donor T cell engraftment. (D) AT -> YH tended to have a higher histopathology score compared to YT -> AH at day 7 p.i. (E & F) Representative histology shown. ****P<0.0001, unpaired t-test.
Deep-CEE I: Fishing for Galaxy Clusters with Deep Neural Nets
Creators: name: Chan, Matthew C.
name: Stott, John P.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We introduce Deep-CEE (Deep Learning for Galaxy Cluster Extraction and Evaluation), a proof of concept for a novel deep learning technique, applied directly to wide-field colour imaging to search for galaxy clusters, without the need for photometric catalogues. This technique is complementary to traditional methods and could also be used in combination with them to confirm galaxy cluster candidates. We use a state-of-the-art probabilistic algorithm, adapted to localize and classify galaxy clusters from other astronomical objects in SDSS imaging. As there is an abundance of labelled data for galaxy clusters from previous classifications in publicly available catalogues, we do not need to rely on simulated data. This means we keep our training data as realistic as possible, which is advantageous when training a deep learning algorithm. Ultimately, we will apply our model to surveys such as LSST and Euclid to probe wider and deeper into unexplored regions of the Universe. This will produce large samples of both high redshift and low mass clusters, which can be utilized to constrain both environment-driven galaxy evolution and cosmology.
description: Accepted by MNRAS on 2nd October 2019. 18 pages; doi:10.1093/mnras/stz2936
Othius pokharensis COIFFAIT 1983
Creators: name: Assing, Volker
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Staphylinidae
Othius
Othius pokharensis

description: Othius pokharensis COIFFAIT, 1983
M a t e r i a l e x a m i n e d: Nepal: 1♀, SW-Dhaulagiri, Dhara Khola valley, 28°31'N, 83°18'E, 1900 m, 21.-22.V.2012, leg. Schmidt (cAss); 1♀, Koshi, forest 1 km SW Chichila, 1800 m, pitfall, 18.X.2002, leg. Weipert (NME).
 C o m m e n t: Othius pokharensis is the most widespread Othius species in the Himalaya, its distribution ranging from Himachal Pradesh to Sikkim (ASSING 1998, 2003a, 2005).
description: Published as part of Assing, Volker, 2015, A revision of Othiini. XIX. Two new species of Othius, the first record of the genus from Vietnam, and additional records (Coleoptera: Staphylinidae: Staphylininae), pp. 1235-1250 in Linzer biologische Beiträge 47 (2) on page 1239, DOI: 10.5281/zenodo.5415927
Mass spectrum of the hidden-charm pentaquarks in the compact diquark model
Creators: name: Ali, Ahmed
name: Ahmed, Ishtiaq
name: Aslam, M. Jamil
name: Parkhomenko, Alexander Ya.
name: Rehman, Abdur
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: The LHCb collaboration have recently updated their analysis of the resonant $J/ψp$ mass spectrum in the decay $Λ_b^0 \to J/ψp K^-$, making use of their combined Run 1 and Run 2 data. In the updated analysis, three narrow states, $P_c (4312)^+$, $P_c (4440)^+$,and $P_c (4457)^+$, are observed. The spin-parity assignments of these states are not yet known. We interpret these narrow resonances as compact hidden-charm diquark-diquark-antiquark pentaquarks. Using an effective Hamiltonian, based on constituent quarks and diquarks, we calculate the pentaquark mass spectrum for the complete $SU (3)_F$ lowest $S$- and $P$-wave multiplets, taking into account dominant spin-spin, spin-orbit, orbital and tensor interactions. The resulting spectrum is very rich and we work out the quark flavor compositions, masses, and $J^P$ quantum numbers of the pentaquarks. However, heavy quark symmetry restricts the observable states in $Λ_b$-baryon, as well as in the decays of the other weakly-decaying $b$-baryons, $Ξ_b$ and $Ω_b$. In addition, some of the pentaquark states are estimated to lie below the $J/ψp$ threshold in $Λ_b$-decays (and corresponding thresholds in $Ξ_b$- and $Ω_b$-decays). They decay via $c \bar c$ annihilation into light hadrons or a dilepton pair, and are expected to be narrower than the $P_c$-states observed. We anticipate their discovery, as well as of the other pentaquark states present in the spectrum at the LHC, and in the long-term future at a Tera-$Z$ factory.
description: 68 pages, 1 figure, 16 tables, submitted to JHEP. V2: discussions extended, references added, typos corrected, results unchanged. V3: A comment added at the end of Sec. 6
(Twisted) Toroidal Compactification of pp-Waves
Creators: name: Michelson, Jeremy
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The maximally supersymmetric type IIB pp-wave is compactified on spatial circles, with and without an auxiliary rotational twist. All spatial circles of constant radius are identified. Without the twist, an S$^1$ compactification can preserve 24, 20 or 16 supercharges. $T^2$ compactifications can preserve 20, 18 or 16 supercharges; $T^3$ compactifications can preserve 18 or 16 supercharges and higher compactifications preserve 16 supercharges. The worldsheet theory of this background is discussed. The T-dual and decompactified type IIA and M-theoretic solutions which preserve 24 supercharges are given. Some comments are made regarding the AdS parent and the CFT description.
description: 22 pages REVTeX 4 and AMSLaTeX. v3: References and a paragraph on nine dimensional Killing spinors were added. v4: A few typos corrected and a footnote was modified
Optical Counterparts of ULXs and Their Host Environments in NGC 4490/4485
Creators: name: Avdan, Senay
name: Akyuz, Aysun
name: Vinokurov, Alexander
name: Aksaker, Nazım
name: Avdan, Hasan
name: Fabrika, Sergei
name: Valeev, Azamat
name: Akkaya-Oralhan, Inci
name: Balman, Şölen
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: We report the identification of the possible optical counterparts of five out of seven Ultraluminous X-ray Sources (ULXs) in NGC 4490/4485 galaxy pair. Using archival Hubble Space Telescope ({\it HST}) imaging data, we identified a single optical candidate for two ULXs (X-4 and X-7) and multiple optical candidates for the other three ULXs (X-2, X-3 and X-6) within $\sim$ $0\farcs2$ error radius at the 90\% confidence level. Of the two remaining ULXs, X-1 has no {\it HST} imaging data and photometry could not be performed due to the position of X-5 in NGC4490. Absolute magnitudes ($M_{V}$) of the optical candidates lie between $-5.7$ and $-3.8$. Color-Magnitude Diagrams (CMDs) have been used to investigate the properties of counterparts and their environments. The locations of the counterparts of X-2, X-4, and X-6 suggest possible association with nearby group of stars while others have no association with a star cluster or group of stars. For comparison purposes, we analyzed previously unused three archival XMM-Newton observations. The long-term X-ray light curves of the sources (except transient X-7) show variability by a factor of three in a time scale more than a decade. The use of disk blackbody model for the mass of the compact objects indicates that these objects might have masses most likely in the range 10$-$15 $M_{\sun}$.
description: 20 pages, 13 figures, submitted to ApJ
Υπάρχει η έννοια του υπερβατολογικού στην αρχαία Ελληνική φιλοσοφία;
Creators: name: Περδικούρη, Ελένη
Publisher: name: Αξιολογικά
Year: 2012
Subjects: φιλοσοφία

description: Αξιολογικά, Τεύχος 15 (Μάϊος 2006)
Eulasia vittata subsp. vittata ssp. vittata (FABRICIUS 1775
Creators: name: Mitter, H.
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Glaphyridae
Eulasia
Eulasia vittata
E. vittata ssp. vittata

description: E. vittata ssp. vittata (Abb. 2)
M a t e r i a l: SMNS: S-Türkei, s. Egridir, Kovada, 6.5.1973, 8 Ex. leg. D. Bernhauer; W-Türkei, 39 km N Kücükkuyu, 23.5. 1973, leg. D. Bernhauer; S-Türkei, 20 km N Korkuteli, 13.6.1987, leg. T. Osten; Ak-Chehir, Anatol. c. (ohne Datum), 3 Ex.; Denizli, 2.6.1967, 2 Ex. leg. E. Baudisch.
E i g e n e S a m m l u n g:GR, Samos, Pythagorio, Mon.Spiliani, 30.5.- 9.6.2003, 2 Ex. leg. D. Dauber; GR, Samos, ca. 5 km W Posidonio, 20.- 26.5.2002, 2 Ex., und 1.- 5.6.2003, leg. D. Dauber; GR, Insel Kos, Juni 1975, 2 Ex. leg. v. Budberg; GR, Insel Kos, SO Mastichari (N 36°50’ E 27°05’), 31.5.- 1.6.2003, 2 Ex. leg. Tiefenthaler; GR, Ile de Lesbos, Molinos, coll. A. Chaminade; GR, Macedonia, Pangäon Oros, 50 km W of Kavala, Messoropi, 900 m, 10.6.2006, leg. A. Wrzecionko; West-TR, Boncuk Daglari, Üzümlü, 700 m, 20 km N Fethiye, 26.- 30.5.1997, 15 Ex., und 1.- 11.6.1999, leg. D. Dauber; Turcia c., Sultandagi, Sultan daglari, 27.5.1994, 9 Ex. leg. F. Moravec; Turkey SW, Isparta env., 23.6.1998, 3 Ex. leg. J. Halada; Türkei, Kaunos, 1.6.1997, 5 Ex. leg. D. Dauber; Syria? (ohne Datum), coll. Hildebrand.
description: Published as part of Mitter, H., 2011, Die Aberrationen von Eulasia (Vittateulasia) vittata ssp. vittata (FABRICIUS 1775) und ihre geographische Verbreitung (Coleoptera: Glaphyridae), pp. 1253-1257 in Linzer biologische Beiträge 43 (2) on page 1254, DOI: 10.5281/zenodo.5326259
Additional file 1 of Genome-wide analysis of TALE superfamily in Triticum aestivum reveals TaKNOX11-A is involved in abiotic stress response
Creators: name: Han, Yuxuan
name: Zhang, Lili
name: Yan, Luyu
name: Xiong, Xinxin
name: Wang, Wenjing
name: Zhang, Xiao-Hong
name: Min, Dong-Hong
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 1: Figure S1. Syntenic and Evolutionary analyses in wheat TALE family. a) UpSet plot of non-redundant TALE genes in different species. b) Violin plot of Ka/Ks rations in duplicated TALE gene pairs.
Αισθητικές αξίες, ζητήματα θεωρίας στους H. Rickert και M. Scheler
Creators: name: Τσέτσος, Μάρκος
Publisher: name: Αξιολογικά
Year: 2012
Subjects: φιλοσοφία

description: Αξιολογικά, Τεύχος 15 (Μάϊος 2006)
MOESM3 of Spike developmental stages and ABA role in spikelet primordia abortion contribute to the final yield in barley (Hordeum vulgare L.)
Creators: name: Boussora, Faiza
name: Allam, Mohamed
name: Ferdaous Guasmi
name: Ferchichi, Ali
name: Rutten, Twan
name: Hansson, Mats
name: Youssef, Helmy
name: BÃ¶Rner, Andreas
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Developmental Biology
subject: Marine Biology
subject: Plant Biology

description: Additional file 3: Table S2. Mean values of yield traits, spike length (cm), seed length (mm), seed width (mm), seed area (mm2), number of seeds/plant, seeds weight/plant (g) and 1000-seed weight (TSW) (g) for the five tasted barley genotypes under control and salinity treatment conditions.
Quantum versus classical descriptions of sub-Poissonian light generation in three-wave mixing
Creators: name: Bajer, Jiri
name: Miranowicz, Adam
Publisher: name: arXiv
Year: 2001
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Sub-Poissonian light generation in the non-degenerate three-wave mixing is studied numerically and analytically within quantum and classical approaches. Husimi Q-functions and their classical trajectory simulations are analysed to reveal a special regime corresponding to the time-stable sub-Poissonian photocount statistics of the sum-frequency mode. Conditions for observation of this regime are discussed. Theoretical predictions of the Fano factor and explanation of the extraordinary stabilization of the sub-Poissonian photocount behavior are obtained analytically by applying the classical trajectories. Scaling laws for the maximum sub-Poissonian behavior are found. Noise suppression levels in the non-degenerate vs degenerate three-wave mixing are discussed on different time scales compared to the revival times. It is shown that the non-degenerate conversion offers much better stabilization of the suppressed noise in comparison to that of degenerate process.
description: 9 pages, 12 figures, to be published in J. Optics B