cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 12 of Alternative splicing level related to intron size and organism complexity
Creators: name: Yang, Pengcheng
name: Wang, Depin
name: Kang, Le
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 12: Figure S5. Influence of highly expressed genes on the calculation of correlations between ASP/L and intron size-related statistics across all three sets of species. The analysis details are the same as those described in the figure legend for Fig. 3E. The green boxes represent the correlations or P values calculated using highly expressed genes, whereas the purple boxes represent those values calculated using genes with all genes. Although the correlations and P values varied between the highly expressed genes and all genes, these differences were not significant. MeanIntr, mean intron size; CDSdens, coding sequence density; IntrDens, intron density.
A family of Koszul algebras arising from finite-dimensional representations of simple Lie algebras
Creators: name: Chari, Vyjayanthi
name: Greenstein, Jacob
Publisher: name: arXiv
Year: 2008
Subjects: subject: Representation Theory (math.RT)
subject: Quantum Algebra (math.QA)
subject: Rings and Algebras (math.RA)
subject: FOS: Mathematics
subject: 17B10, 17B70, 16W50

description: Let $\lie g$ be a simple Lie algebra and let $\bs^{\lie g}$ be the locally finite part of the algebra of invariants $(_\bc\bv\otimes S(\lie g))^{\lie g}$ where $\bv$ is the direct sum of all simple finite-dimensional modules for $\lie g$ and $S(\lie g)$ is the symmetric algebra of $\lie g$. Given an integral weight $ξ$, let $Ψ=Ψ(ξ)$ be the subset of roots which have maximal scalar product with $ξ$. Given a dominant integral weight $λ$ and $ξ$ such that $Ψ$ is a subset of the positive roots we construct a finite-dimensional subalgebra $\bs^{\lie g}_Ψ(\le_Ψλ)$ of $\bs^{\lie g}$ and prove that the algebra is Koszul of global dimension at most the cardinality of $Ψ$. Using this we then construct naturally an infinite-dimensional Koszul algebra of global dimension equal to the cardinality of $Ψ$. The results and the methods are motivated by the study of the category of finite-dimensional representations of the affine and quantum affine algebras.
description: 25 pages
Impact of chromium coatings on post-LOCA embrittlement of Optimised ZIRLO cladding
Creators: name: Alakiozidis, Ioannis
name: Frankel, Philipp
name: Maric, Mia
name: Shah, Zaheen
name: Ambard, Antoine
name: Hunt, Callum
name: Gauthier, Axel
name: Lopes Nunes de Sousa, Mark
Publisher: name: Zenodo
Year: 2024

description: This is a poster presented to the MIDAS Annual Progress Meeting in 16-17 September 2024.
Modular representations of the ortho-symplectic supergroups
Creators: name: Shu, Bin
name: Wang, Weiqiang
Publisher: name: arXiv
Year: 2007
Subjects: subject: Representation Theory (math.RT)
subject: Quantum Algebra (math.QA)
subject: FOS: Mathematics

description: A Chevalley type integral basis for the ortho-symplectic Lie superalgebra is constructed. The simple modules of the ortho-symplectic supergroup over an algebraically closed field of prime characteristic not equal to 2 are classified, where a key combinatorial ingredient comes from the Mullineux conjecture on modular representations of the symmetric group. A Steinberg tensor product theorem for the ortho-symplectic supergroup is also obtained.
description: v2, 23 pages, updated references and minor changes, to appear in Proc. London Math. Soc
Additional file 13 of Alternative splicing level related to intron size and organism complexity
Creators: name: Yang, Pengcheng
name: Wang, Depin
name: Kang, Le
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 13: Figure S6. Species with higher organism complexity had higher expression-level differences between genes along the spliceosome pathway (ko03040) and the other three mRNA biogenesis and transport pathways (ko03013, ko03025, and ko03018). (A, B) StringTie analysis using the expression data from the D1 dataset. (C, D) LeafCutter analysis using the D2 dataset. (A, C) Expression-level distribution of ASP/L-related pathways and organism complexity. (B, D) Positive correlation between the Wilcoxon W-statistics and organism complexity (represented by cell type number, CTN) (D1_StringTie, Spearman’s ρ = 0.63, P = 0.015; D2_LeafCutter, ρ = 0.62, P = 0.017). The Wilcoxon rank-sum test was used to calculate the W-statistic between the spliceosome pathway (ko03040) and the other three mRNA biogenesis and transport pathways (ko03013, ko03025, and ko03018).
The rotation of polarization by gravitational waves
Creators: name: Faraoni, Valerio
Publisher: name: arXiv
Year: 2007
Subjects: subject: Astrophysics (astro-ph)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: There are conflicting statements in the literature about the gravitational Faraday rotation of the plane of polarization of polarized electromagnetic radiation travelling through a gravitational wave. This issue is reconsidered using a simple formalism describing the rotation of the plane of polarization in a gravitational field, in the geometric optics approximation. It is shown that, to first order in the gravitational wave amplitude, the rotation angle is a boundary effect which vanishes for localized (astrophysically generated) gravitational waves and is non-zero, but nevertheless negligible, for cosmological gravitational waves.
description: 11 pages, latex, to appear in New Astronomy
A Wireless Embedded Tongue Tactile Biofeedback System for Balance Control
Creators: name: Vuillerme, Nicolas
name: Pinsault, Nicolas
name: Chenu, Olivier
name: Fleury, Anthony
name: Payan, Yohan
name: Demongeot, Jacques
Publisher: name: arXiv
Year: 2008
Subjects: subject: Neurons and Cognition (q-bio.NC)
subject: FOS: Biological sciences

description: We describe the architecture of an original biofeedback system for balance improvement for fall prevention and present results of a feasibility study. The underlying principle of this biofeedback consists of providing supplementary information related to foot sole pressure distribution through a wireless embedded tongue-placed tactile output device. Twelve young healthy adults voluntarily participated in this experiment. They were asked to stand as immobile as possible with their eyes closed in two conditions of nobiofeedback and biofeedback. Centre of foot pressure (CoP) displacements were recorded using a force platform. Results showed reduced CoP displacements in the biofeedback relative to the no-biofeedback condition. On the whole, the present findings evidence the effectiveness of this system in improving postural control on young healthy adults. Further investigations are needed to strengthen the potential clinical value of this device.
description: Pervasive and Mobile Computing (2008) in press
Conditional Deep Gaussian Processes: empirical Bayes hyperdata learning
Creators: name: Lu, Chi-Ken
name: Shafto, Patrick
Publisher: name: arXiv
Year: 2021
Subjects: subject: Machine Learning (cs.LG)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: It is desirable to combine the expressive power of deep learning with Gaussian Process (GP) in one expressive Bayesian learning model. Deep kernel learning showed success in adopting a deep network for feature extraction followed by a GP used as function model. Recently,it was suggested that, albeit training with marginal likelihood, the deterministic nature of feature extractor might lead to overfitting while the replacement with a Bayesian network seemed to cure it. Here, we propose the conditional Deep Gaussian Process (DGP) in which the intermediate GPs in hierarchical composition are supported by the hyperdata and the exposed GP remains zero mean. Motivated by the inducing points in sparse GP, the hyperdata also play the role of function supports, but are hyperparameters rather than random variables. We follow our previous moment matching approach to approximate the marginal prior for conditional DGP with a GP carrying an effective kernel. Thus, as in empirical Bayes, the hyperdata are learned by optimizing the approximate marginal likelihood which implicitly depends on the hyperdata via the kernel. We shall show the equivalence with the deep kernel learning in the limit of dense hyperdata in latent space. However, the conditional DGP and the corresponding approximate inference enjoy the benefit of being more Bayesian than deep kernel learning. Preliminary extrapolation results demonstrate expressive power from the depth of hierarchy by exploiting the exact covariance and hyperdata learning, in comparison with GP kernel composition, DGP variational inference and deep kernel learning. We also address the non-Gaussian aspect of our model as well as way of upgrading to a full Bayes inference.
description: Accepted by Special Issue "Probabilistic Methods for Deep Learning" of Entropy, 15 pages, reference to recent papers of finite Bayesian neural network added
Additional file 14 of Alternative splicing level related to intron size and organism complexity
Creators: name: Yang, Pengcheng
name: Wang, Depin
name: Kang, Le
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 14: Figure S7. Relationships between organism complexity and the six genomic features of splicing factors in the SecondSpeciesSet. The analysis details are the same as those described in the figure legend of Fig. 5. The four ASP/L-related pathways investigated were RNA transport (ko03013), mRNA surveillance pathway (ko03015), RNA degradation (ko03018), and spliceosome (ko03040). The gene expression levels were calculated using LeafCutter (A), and, for each species, the Wilcoxon W-statistics was calculated between ko03040 and the combination of the other three pathways (B), which yielded Spearman’s ρ = 0.39, P = 0.17. (C) Scatter plots of the genome-wide protein-coding genes (left) and those along the four pathways (right) vs. the cell type number (CTN). The gene numbers in the four pathways were positively correlated with organism complexity using the genome-wide protein-coding genes as the background (Chi-square test: ko03040, ko03013, ko03018, and ko03015, P = 5.8e-26, 6.9e-15, 6.3e-07, and 7.7e-12, respectively). (D) Scatter plots of the evolutionary distance and organism complexity differences across the 14 species based on the species phylogenetic tree and the protein alignment of the KEGG orthologs along the four pathways (right) vs. the CTN difference. The CTN difference was calculated as diff(a,b)/max(a,b) and ranged between 0 and 1. The evolutionary distances were positively correlated with the organism complexity differences (left: Spearman’s ρ = 0.4, P = 6.5e-05; right: for ko03040, ko03013, ko03015, and ko03018, ρ = 0.49, 0.43, 0.44, and 0.44, respectively, and P = 1.4e-04, 1.2e-03, 7.8e-04, and 8.5e-04, respectively). (E) Positive correlations between ASP and CTN using the LeafCutter tool for all genes (left) and the genes along the four pathways (right) (left: Spearman’s ρ = 0.66, P = 0.03; right: for ko03013, ko03015, ko03018, and ko03040, Spearman’s ρ = 0.54, 0.5, 0.42, and 0.61, respectively, and P = 0.09, 0.11, 0.2, and 0.05, respectively). (F) Positive correlations between the fraction of disordered residues and CTN for all genes (left: Spearman’s ρ = 0.31, P = 0.28) and genes along the four pathways (right: for ko03013, ko03015, ko03018 and ko03040, Spearman’s ρ = 0.38, 0.3, 0.52, and 0.58, respectively, and P = 0.19, 0.31, 0.06, and 0.03, respectively). (G) Scatter plots of the fraction of binding residues vs. CTN for all genes (left: Spearman’s ρ = 0.3, P = 0.3) and genes along the four pathways (right: for ko03013, ko03015, ko03018 and ko03040, Spearman’s ρ = 0.55, 0.38, 0.62, and 0.52, respectively, and P = 0.04, 0.19, 0.02, and 0.06, respectively).
Independent SE(3)-Equivariant Models for End-to-End Rigid Protein Docking
Creators: name: Ganea, Octavian-Eugen
name: Huang, Xinyuan
name: Bunne, Charlotte
name: Bian, Yatao
name: Barzilay, Regina
name: Jaakkola, Tommi
name: Krause, Andreas
Publisher: name: arXiv
Year: 2021
Subjects: subject: Artificial Intelligence (cs.AI)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: Protein complex formation is a central problem in biology, being involved in most of the cell's processes, and essential for applications, e.g. drug design or protein engineering. We tackle rigid body protein-protein docking, i.e., computationally predicting the 3D structure of a protein-protein complex from the individual unbound structures, assuming no conformational change within the proteins happens during binding. We design a novel pairwise-independent SE(3)-equivariant graph matching network to predict the rotation and translation to place one of the proteins at the right docked position relative to the second protein. We mathematically guarantee a basic principle: the predicted complex is always identical regardless of the initial locations and orientations of the two structures. Our model, named EquiDock, approximates the binding pockets and predicts the docking poses using keypoint matching and alignment, achieved through optimal transport and a differentiable Kabsch algorithm. Empirically, we achieve significant running time improvements and often outperform existing docking software despite not relying on heavy candidate sampling, structure refinement, or templates.
Umfragen zu "Wissenschaftlicher Nachwuchs in Berufsverbänden/Fachgesellschaften und Strukturierten Förderprogrammen" durch die Senatskommission für Erdsystemforschung
Creators: name: Feuerhake, Udo
name: Kucera, Michal
name: Hoose, Corinna
name: Holtz, Francois
name: Eicker, Annette
Publisher: name: Zenodo
Year: 2024
Subjects: survey
early career researchers
Nachwuchswissenschaftler
Umfrage

description: Erdsystemwissenschaften in der Qualifikationsphase - eine Analyse der Unterstützungsstrukturen in Fachgesellschaften und Forschungsverbünden

 Die Senatskommission für Erdsystemforschung der Deutschen Forschungsgemeinschaft hat 2019 die Arbeitsgruppe Wissenschaftlicher Nachwuchs" eingesetzt, die sich mit der Situation des wissenschaftlichen Nachwuchses beschäftigte. Dabei ging es einerseits um die universitäre Ausbildung und die aktuellen Herausforderungen. Eine weitere Untersuchung widmete sich der Stellung des wissenschaftlichen Nachwuchses und seiner Berücksichtigung in den Strukturen der Forschung – d.h. den Fachgesellschaften und den größeren Forschungsverbünden. Hierzu wurde im Herbst 2022 in den Fachgesellschaften und in den größeren Forschungsverbünden jeweils eine Umfrage durchgeführt, um die aktuelle Situation des wissenschaftlichen Nachwuchses zu kartieren und das Potential für Weiterentwicklung zu erkennen.

Die Struktur der beiden Umfragen sowie deren Ergebnisse werden hier publiziert.
Additional file 16 of Alternative splicing level related to intron size and organism complexity
Creators: name: Yang, Pengcheng
name: Wang, Depin
name: Kang, Le
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 16: Figure S8. Correlation among genomic features of ASP/L-related genes in the SecondSpeciesSet. (A) Intersection of significant KOs among six genomic features. Spearman correlation and PGLS regression were calculated between these genomic features and organism complexity for each KO in the SecondSpeciesSet. Significant KOs were defined as Spearman’s ρ > 0.4 and PGLS P < 0.05. (B) Principal component analysis of these six genomic features based on the Spearman’s ρ in 112 KOs. The points represent KOs and the shapes represent the four pathways.
Achieving High Curie Temperature in (Ga,Mn)As
Creators: name: Wang, M
name: Campion, R P
name: Rushforth, A W
name: Edmonds, K W
name: Foxon, C T
name: Gallagher, B L
Publisher: name: arXiv
Year: 2008
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We study the effects of growth temperature, Ga:As ratio and post-growth annealing procedure on the Curie temperature, Tc, of (Ga,Mn)As layers grown by molecular beam epitaxy. We achieve the highest Tc values for growth temperatures very close to the 2D-3D phase boundary. The increase in Tc, due to the removal of interstitial Mn by post growth annealing, is counteracted by a second process which reduces Tc and which is more effective at higher annealing temperatures. Our results show that it is necessary to optimize the growth parameters and post growth annealing procedure to obtain the highest Tc.
Erdsystemwissenschaften in der Qualifikationsphase
Creators: name: Eicker, Annette
name: Feuerhake, Udo
name: Holtz, Francois
name: Hoose, Corinna
name: Kučera, Michael
Publisher: name: Zenodo
Year: 2024
Subjects: Earth System Sciences
Geosciences
Erdsystemwissenschaften
Geowissenschaften
Wissenschaftlicher Nachwuchs
Qualifikation
early career researchers

description: Die Senatskommission für Erdsystemforschung der Deutschen Forschungsgemeinschaft hat 2019 eine Arbeitsgruppe eingesetzt, die sich mit der Situation des wissenschaftlichen Nachwuchses beschäftigte. Dabei ging es einerseits um die universitäre Ausbildung und die aktuellen Herausforderungen (siehe (5)). Eine weitere Untersuchung widmete sich der Stellung des wissenschaftlichen Nachwuchses und seiner Berücksichtigung in den Strukturen der Forschung – d.h. den Fachgesellschaften und den größeren Forschungsverbünden. Die Ergebnisse dieser Untersuchung werden in diesem Beitrag vorgestellt.
SEnSeI: A Deep Learning Module for Creating Sensor Independent Cloud Masks
Creators: name: Francis, Alistair
name: Mrziglod, John
name: Sidiropoulos, Panagiotis
name: Muller, Jan-Peter
Publisher: name: arXiv
Year: 2021
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Signal Processing (eess.SP)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: We introduce a novel neural network architecture -- Spectral ENcoder for SEnsor Independence (SEnSeI) -- by which several multispectral instruments, each with different combinations of spectral bands, can be used to train a generalised deep learning model. We focus on the problem of cloud masking, using several pre-existing datasets, and a new, freely available dataset for Sentinel-2. Our model is shown to achieve state-of-the-art performance on the satellites it was trained on (Sentinel-2 and Landsat 8), and is able to extrapolate to sensors it has not seen during training such as Landsat 7, PerúSat-1, and Sentinel-3 SLSTR. Model performance is shown to improve when multiple satellites are used in training, approaching or surpassing the performance of specialised, single-sensor models. This work is motivated by the fact that the remote sensing community has access to data taken with a hugely variety of sensors. This has inevitably led to labelling efforts being undertaken separately for different sensors, which limits the performance of deep learning models, given their need for huge training sets to perform optimally. Sensor independence can enable deep learning models to utilise multiple datasets for training simultaneously, boosting performance and making them much more widely applicable. This may lead to deep learning approaches being used more frequently for on-board applications and in ground segment data processing, which generally require models to be ready at launch or soon afterwards.
description: 22 pages, 7 figures. This is an accepted version of work to be published in the IEEE Transactions on Geoscience and Remote Sensing
On a class number formula for real quadratic number fields
Creators: name: Bradley, David M.
name: Ozluk, Ali E.
name: Snyder, C.
Publisher: name: arXiv
Year: 2007
Subjects: subject: Number Theory (math.NT)
subject: FOS: Mathematics
subject: 11M20; 11R29

description: For an even Dirichlet character psi, we obtain a formula for L(1,psi) in terms of a sum of Dirichlet L-series evaluated at s=2 and s=3 and a rapidly convergent numerical series involving the central binomial coefficients. We then derive a class number formula for real quadratic number fields by taking L(s,psi) to be the quadratic L-series associated with these fields.
description: 12 pages AMSLaTeX
Fractional spins and static correlation error in density functional theory
Creators: name: Cohen, Aron J.
name: Mori-Sánchez, Paula
name: Yang, Weitao
Publisher: name: arXiv
Year: 2008
Subjects: subject: Other Condensed Matter (cond-mat.other)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Electronic states with fractional spins arise in systems with large static correlation (strongly correlated systems). Such fractional-spin states are shown to be ensembles of degenerate ground states with normal spins. It is proven here that the energy of the exact functional for fractional-spin states is a constant, equal to the energy of the comprising degenerate pure spin states. Dramatic deviations from this exact constancy condition exist with all approximate functionals, leading to large static correlation errors for strongly correlated systems, such as chemical bond dissociation and band structure of Mott insulators. This is demonstrated with numerical calculations for several molecular systems. Approximating the constancy behavior for fractional spins should be a major aim in functional constructions and should open the frontier for DFT to describe strongly correlated systems. The key results are also shown to apply in reduced density-matrix functional theory.
description: 6 pages, 4 figures
Potential and sky coverage for off-axis fringe tracking in optical long baseline interferometry
Creators: name: Boskri, Abdelkarim
name: Petrov, Romain G.
name: Halkouj, Thami El
name: Hadjara, Massinissa
name: Leftley, James
name: Benkhaldoun, Zouhair
name: Cruzalèbes, Pierre
name: Ziad, Aziz
name: Carbillet, Marcel
Publisher: name: arXiv
Year: 2021
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: The spectacular results provided by the second-generation VLTI instruments GRAVITY and MATISSE on active galactic nuclei (AGN) trigger and justify a strong increase in the sensitivity limit of optical interferometers. A key component of such an upgrade is off-axis fringe tracking. To evaluate its potential and limitations, we describe and analyse its error budget including fringe sensing precision and temporal, angular and chromatic perturbations of the piston. The global tracking error is computed using standard seeing parameters for different sites, seeing conditions and telescope sizes for the current GRAVITY Fringe Tracker (GFT) and a new concept of Hierarchical Fringe Tracker. Then, it is combined with a large catalogue of guide star candidates from Gaia to produce sky coverage maps that give the probability to find a usable off-axis guide star in any part of the observable sky. These maps can be used to set the specifications of the system, check its sensitivity to seeing conditions, and evaluate the feasibility of science programs. We check the availability of guide stars and the tracking accuracy for a large set of 15 799 Quasars to confirm the feasibility of a large program on Broad Line Regions in the K band with the GFT and show how it can be extended to the L, M, and N bands. Another set of 331 well-characterized nearby AGNs shows the high potential of MATISSE for imaging and characterization of the dust torus in the N band under off-axis tracking on both Unit Telescopes and Auxiliary Telescopes.
description: 25 pages, 28 Figures, Published article
A low background facility inside the LVD detector at Gran Sasso
Creators: name: Arneodo, F.
name: Fulgione, W.
Publisher: name: arXiv
Year: 2008
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The Large Volume Detector (LVD) in the Gran Sasso Laboratory of INFN is an observatory mainly devoted to search for neutrinos from core collapse supernovae. It consists of 1000 tons of liquid scintillator divided in 840 stainless steel tanks 1.5m$^3$ each. In this letter we present the possibility for LVD to work both as a passive shield and moderator for the low energy gamma and neutron background and as an active veto for muons and higher energy neutrons. An inner region inside the LVD structure ("LVD Core Facility") can be identified, with a volume of about 30m$^3$, with the neutron background typical of an underground laboratory placed at a much deeper site. This region can be realized with a negligible impact on the LVD operation and sensitive mass. The LVD Core Facility could be effectively exploited by a compact experiment for the search of rare events, such as double beta decay or dark matter.
description: 5 pages, 2 figures
The Light Quanta Modulated Physiological Response of Brassica Juncea Seedlings Subjected to Ni(II) Stress
Creators: name: Dasgupta-Schubert, N.
name: Alexander, S.
name: Sommer, L.
name: Whelan, T.
name: Villanueva, R. Alfaro Cuevas
name: Lopez, M. E. Mendez
name: Persans, M. W.
Publisher: name: arXiv
Year: 2007
Subjects: subject: Other Quantitative Biology (q-bio.OT)
subject: FOS: Biological sciences

description: This work is a study of the inter-relationship between parameters that principally affect metal up-take in the plant. The relationships between the concentration of metal in the growth medium, Cs, the concentration of metal absorbed by the plant, Cp, and the total biomass achieved, M, all of which are factors relevant to the efficiency of phytoremediation of the plant, have been investigated via the macro-physiological response of Brassica juncea seedlings to Ni(II) stress. The factorial growth experiments treated the Ni(II) concentration in the agar gel and the diurnal light quanta (DLQ) as independently variable parameters. Observations included the evidence of light enhancement of Ni toxicity at the root as well as at the whole plant level, the shoot mass index as a possible indicator of shoot metal sequestration in B. juncea, the logarithmic variation of Cp with Cs and the power-law dependence of M on Cp. The sum total of these observations indicate that for the metal accumulator B. juncea with regard to its capacity to accumulate Ni, the overall metabolic nature of the plant is important; neither rapid biomass increase nor a high metal concentration capability favor the removal of high metal mass from the medium, but rather the plant with the moderate photosynthetically driven biomass growth and moderate metal concentrations demonstrated the ability to remove the maximum mass of metal from the medium. The implications of these observations in the context of the perceived need in phytoremediation engineering to maximize Cp and M simultaneously in the same plant, are discussed.
description: 9 pages, 7 figures, PDF file only. Based on a lecture presented by N. Dasgupta-Schubert at the ISEB/ESEB/JSEB International Symposium on Environmental Biotechnology in Leipzig, Germany, July 9-13, 2006
title: Oncidium; xOncidesa; xIonocidium; xZelenkocidium :
title: Richtlinien für die Durchführung der Prüfung auf Unterscheidbarkeit, Homogenität und Beständigkeit.
titleType: Subtitle
Creators: name: International Union For The Protection Of New Varieties Of Plants,
Publisher: name: International Union for the Protection of New Varieties of Plants,
Year: 0
Subjects: Plants
New Varieties of Plants
Oncidium

description: Zweck dieser Richtlinien („Prüfungsrichtlinien“) ist es, die in der Allgemeinen Einführung (Dokument TG/1/3) und deren verbundenen TGP-Dokumenten enthaltenen Grundsätze in detaillierte praktische Anleitung für die harmonisierte Prüfung der Unterscheidbarkeit, der Homogenität und der Beständigkeit (DUS) umzusetzen und insbesondere geeignete Merkmale für die DUS-Prüfung und die Erstellung harmonisierter Sortenbeschreibungen auszuweisen.
Three-component Stackel model of the Galaxy based on the rotation curve from maser data
Creators: name: Gromov, A. O.
name: Nikiforov, I. I.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: A three-component Stackel model of the Galaxy, including the bulge, disk, and halo, is constructed. Parameter estimates of the potential are obtained as a result of fitting the model rotation curve to azimuthal velocities found from data on trigonometric parallaxes and spatial velocities of masers. The fitting method takes into account the measurement and natural dispersions of azimuthal velocities and uses an algorithm for excluding objects with excessive residuals. In order to obtain more uniform samples, the objects were divided into two groups: masers associated with high-mass star forming regions and masers of other types. A significant kinematic inhomogeneity of these groups was identified and taken into account: the azimuthal velocity dispersion is $σ_{0,1}=4.3\pm 0.4$~km\,s$^{-1}$, in the first group and $σ_{0,2}=15.2\pm1.3$~km\,s$^{-1}$ in the second. After constructing the model of the Galactic-plane potential, it was generalized to the entire space under the assumption of the existence of a third quadratic integral of motion. When reconstructing the Galactic rotation curve in detail, the used algorithm gives an analytical expression for the Stackel potential, which significantly simplifies the task of constructing the Galaxy's phase density model in the Stackel approximation. In order to make the Stackel model more realistic, one needs to develop methods of direct account of data on the vertical distribution of density in the Galaxy.
description: 21 pages, 4 figures
Additional file 3 of Alternative splicing level related to intron size and organism complexity
Creators: name: Yang, Pengcheng
name: Wang, Depin
name: Kang, Le
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3: Figure S1. Distribution of alternative splicing prevalence. This analysis was performed using dataset D1, the LeafCutter tool, and 500 genes in each bin. The black line was plotted using real data, whereas the red line was simulated using the sigmoid function. AS, alternative splicing.
On the peculiar nature of turbulence in planetary dynamos
Creators: name: Nataf, Henri-Claude
name: Gagnière, Nadège
Publisher: name: arXiv
Year: 2008
Subjects: subject: Geophysics (physics.geo-ph)
subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: Under the combined constraints of rapid rotation, sphericity, and magnetic field, motions in planetary cores get organized in a peculiar way. Classical hydrodynamic turbulence is not present, but turbulent motions can take place under the action of the buoyancy and Laplace forces. Laboratory experiments, such as the rotating spherical magnetic Couette DTS experiment in Grenoble, help us understand what motions take place in planetary core conditions.
description: in press in Compte Rendu de l'Academie des Sciences
Strong Off-Resonant Enhancement of Spontaneous Emission in Metal-Dielectric-Metal Plasmon Waveguide Structures
Creators: name: Jun, Y. C.
name: Kekapture, R. D.
name: White, J. S.
name: Brongersma, M. L.
Publisher: name: arXiv
Year: 2008
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We theoretically investigate the spontaneous emission process of an optical, dipolar emitter in metal-dielectric-metal slab and slot waveguide structures. We find that both structures exhibit strong off-resonant emission enhancements due to the tight confinement of modes between two metallic plates. The large enhancement of surface plasmon-polariton excitation enables dipole emission to be preferentially coupled into plasmon waveguide modes. These structures find applications in creating nanoscale local light sources or in generating guided single plasmons in integrated optical circuits.
description: 13 pages, 5 figures
Catocala faustina subsp. allusa Hulst 1884
Creators: name: Gall, Lawrence
name: Hawks, David
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Noctuidae
Catocala
Catocala faustina
Catocala faustina ssp. allusa

description: Catocala faustina ssp. allusa syn. frenchii Poling, syn. rev. Fig. 18 (lectotype) Catocala frenchii Poling, 1901: 125 Catocala allusa syn. frenchi; Barnes and McDunnough 1918: 22 Catocala allusa syn. frenchi; McDunnough 1938: 116 Catocala allusa syn. frenchi; Franclemont and Todd 1983: 128 Type material. Catocala frenchii: the original description states “two examples, one in collection of G. H. French, the other in the collection of O. C. Poling.” A male type is at the USNM, and is designated as lectotype to clarify application of the name frenchii. The lectotype bears the labels “N. Westminster, / 1900 B.C. / Poling.”, “Frenchii / Type”, “ Catocala / frenchii / Poling / Type.”, “Barnes / Collection.” Type Locality: New Westminster, B[ritish] C[olumbia], Canada. Figures Ι7–24. Type specimens of Catocala. Ι 7 lectotype, C. francisca H. Edwards, 1880 Ι 8 lectotype, C. frenchii Poling, 1901 Ι 9 lectotype, C. gisela Meyer, 1880 20 neotype, C. grotiana Bailey, 1879 2Ι neotype, C. irene Behr, 1870 22 lectotype, C. jessica Strecker, 1877 23 lectotype, C. loretta Barnes & McDunnough, 1918 24 lectotype, C. luctuosa Hulst, 1884.
description: Published as part of Gall, Lawrence & Hawks, David, 2010, Systematics of moths in the genus Catocala (Lepidoptera, Erebidae) IV. Nomenclatorial stabilization of the Nearctic fauna, with a revised synonymic check list, pp. 37-83 in ZooKeys 39 (39) on pages 54-55, DOI: 10.3897/zookeys.39.425, http://zenodo.org/record/576632
description: {"references": ["Poling OC (1901) Some recent work in the genus Catocala. Canadian Entomologist 33: 125 - 129.", "Barnes W, McDunnough J (1918) Illustrations of the North American species of the genus Catocala. Memoirs of the American Museum of Natural History 3: 1 - 47.", "McDunnough JH (1938) Check List of the Lepidoptera of Canada and the United States of America. Part I. Macrolepidoptera. Memoirs of the Southern California Academy of Sciences 1: 1 - 275.", "Franclemont JG, Todd EL (1983) Noctuidae. In: Hodges RW (Ed) Check list of the Lepidoptera of America north of Mexico. University Press, Cambidge, 120 - 159.", "Meyer JL (1880) Catocala gisela, n. sp. In: Edwards H, Descriptions of some new species of Catocala. Bulletin of the Brooklyn Entomological Society 2, 96.", "Bailey JS (1879) Catocala grotiana, n. sp. North American Entomologist 1: 21 - 22.", "Behr H (1870) Synopsis noctuidarum hucusque in California repertarum. Transactions of the American Entomological Society 3: 23 - 28.", "Hulst GD (1884) The genus Catocala. Bulletin of the Brooklyn Entomological Society 7: 14 - 56."]}
Stability analysis of intralayer synchronization in time-varying multilayer networks with generic coupling functions
Creators: name: Anwar, Md Sayeed
name: Rakshit, Sarbendu
name: Ghosh, Dibakar
name: Bollt, Erik M.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Chaotic Dynamics (nlin.CD)
subject: FOS: Physical sciences

description: The stability analysis of synchronization patterns on generalized network structures is of immense importance nowadays. In this article, we scrutinize the stability of intralayer synchronous state in temporal multilayer hypernetworks, where each dynamic units in a layer communicate with others through various independent time-varying connection mechanisms. Here, dynamical units within and between layers may be interconnected through arbitrary generic coupling functions. We show that intralayer synchronous state exists as an invariant solution. Using fast switching stability criteria, we derive the condition for stable coherent state in terms of associated time-averaged network structure, and in some instances we are able to separate the transverse subspace optimally. Using simultaneous block diagonalization of coupling matrices, we derive the synchronization stability condition without considering time-averaged network structure. Finally, we verify our analytically derived results through a series of numerical simulations on synthetic and real-world neuronal networked systems.
description: 18 pages, 10 figures
Additional file 8 of Alternative splicing level related to intron size and organism complexity
Creators: name: Yang, Pengcheng
name: Wang, Depin
name: Kang, Le
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 8: Figure S2. ASP/L displayed a positive correlation with organism complexity when using the D5 and D6 datasets. The boxplot indicates the P value with -log10 transformation for each column. PASP, predicted alternative splicing prevalence; ASP, actual alternative splicing prevalence; PASL, predicted alternative splicing level; ASL, actual alternative splicing level; GeneNum, gene number; SplicLvl, splicing level; CorMethod, correlation calculation method.
Stimuli-responsive Mesoporous Silica Nanoparticles for Applications in Cancer Theranostics
Creators: name: Knezevic, Nikola
name: Mladenovic, Minja
name: Mundzic, Mirjana
name: Pavlovic, Aleksandra
Publisher: name: Zenodo
Year: 2021

description: Mesoporous silica nanoparticles (MSN) exhibit highly beneficial features for devising nanosystems applicable in cancer therapy, imaging, or diagnostics. The high surface area of MSN, which can be easily post-synthetically functionalized with different organosilanes, in addition to their structured porosity available for loading cargo molecules, allows a plethora of opportunities for devising multifunctional and multipurpose nanostructures. In this context, our research focuses on devising MSN-based cancer theranostics, containing different modalities for targeting specific cancer microenvironment, and the capabilities for delivering cargo therapeutic molecules upon exposure to the specific conditions of this environment, such as tissue acidosis or elevated concentration of glutathione and other cancer-related biomolecules. Thus, specific surface modification and controlling the release process of therapeutic molecules enables utilization of MSNs as unique facilitators toward enhancing the efficacy and precision of cancer treatment, imaging and sensing.
description: This research was supported by the Science Fund of the Republic of Serbia, PROMIS, #6060755.
Tight--binding description of the quasiparticle dispersion of graphite and few--layer graphene
Creators: name: Grüneis, A.
name: Attaccalite, C.
name: Wirtz, L.
name: Saito, H. Shiozawa R.
name: Pichler, T.
name: Rubio, A.
Publisher: name: arXiv
Year: 2008
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: A universal set of third--nearest neighbour tight--binding (TB) parameters is presented for calculation of the quasiparticle (QP) dispersion of $N$ stacked $sp^2$ graphene layers ($N=1... \infty$) with $AB$ stacking sequence. The QP bands are strongly renormalized by electron--electron interactions which results in a 20% increase of the nearest neighbour in--plane and out--of--plane TB parameters when compared to band structure from density functional theory. With the new set of TB parameters we determine the Fermi surface and evaluate exciton energies, charge carrier plasmon frequencies and the conductivities which are relevant for recent angle--resolved photoemission, optical, electron energy loss and transport measurements. A comparision of these quantitities to experiments yields an excellent agreement. Furthermore we discuss the transition from few layer graphene to graphite and a semimetal to metal transition in a TB framework.
description: Corresponding author: A. Gr\"uneis Tel.: +49 351 4659 519 e--mail: ag3@biela.ifw-dresden.de
Additional file 1 of Predicting the hosts of prokaryotic viruses using GCN-based semi-supervised learning
Creators: name: Shang, Jiayu
name: Sun, Yanni
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: Additional file 1 Fig S1 –[Prediction performance of BLASTN at the order, family, and genus level. X-axis: taxonomic level. Y-axis: Accuracy.] Fig S2 – [Associations between accuarcy and similarity at genus level. X-axis: Mash distance. Left Y-axis: Accuracy. Right Y-axis: number of testing virus.] Fig S3 – [Prediction performance of HostG at the order, family, and genus level. X-axis: Prediction rate. Y-axis: Accuracy.] Tables S1-S2. Table S1 –[Parameters used for training CNN and GCN.] Table S2 – [Elapsed time for each tool. All the methods were run on Intel® Xeon® Gold 6258R CPU with 8 cores.]
A cohomological obstruction in higher dimensional Chern--Simons gauge theories
Creators: name: Palese, Marcella
name: Winterroth, Ekkehart
Publisher: name: arXiv
Year: 2021
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences
subject: 53C07, 57R20

description: We study a set of cohomology classes which emerge in the cohomological formulations of the calculus of variations as obstructions to the existence of (global) solutions of the Euler--Lagrange equations of Chern--Simons gauge theories in higher dimensions $2p+1 > 3$.
description: 20 pages. arXiv admin note: text overlap with arXiv:2103.03037
Entanglement, EPR-correlations, Bell-nonlocality, and Steering
Creators: name: Jones, S. J.
name: Wiseman, H. M.
name: Doherty, A. C.
Publisher: name: arXiv
Year: 2007
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: In a recent work [Phys. Rev. Lett. {\bf 98}, 140402 (2007)] we defined ``steering'', a type of quantum nonlocality that is logically distinct from both nonseparability and Bell-nonlocality. In the bipartite setting, it hinges on the question of whether Alice can affect Bob's state at a distance through her choice of measurement. More precisely and operationally, it hinges on the question of whether Alice, with classical communication, can convince Bob that they share an entangled state, under the circumstances that Bob trusts nothing that Alice says. We argue that if she can, then this demonstrates the nonlocal effect first identified in the famous EPR paper [Phys. Rev. {\bf 47}, 777 (1935)] as a universal effect for pure entangled states. This ability of Alice to remotely prepare Bob's state was subsequently called steering by Schrödinger, whose terminology we adopt. The phenomenon of steering has been largely overlooked, and prior to our work had not even been given a rigorous definition that is applicable to mixed states as well as pure states. Armed with our rigorous definition, we proved that steerable states are a strict subset of the entangled states, and a strict superset of the states that can exhibit Bell-nonlocality. In this work we expand on these results and provide further examples of steerable states. We also elaborate on the connection with the original EPR paradox.
description: REVtex, 19 pages, 2 figures. v2 minor changes and corrections, published in PRA
Lattices in Tate modules
Creators: name: Poonen, Bjorn
name: Rybakov, Sergey
Publisher: name: arXiv
Year: 2021
Subjects: subject: Algebraic Geometry (math.AG)
subject: Number Theory (math.NT)
subject: FOS: Mathematics
subject: 14K02 (Primary) 14K05 (Secondary)

description: Refining a theorem of Zarhin, we prove that given a $g$-dimensional abelian variety $X$ and an endomorphism $u$ of $X$, there exists a matrix $A \in \operatorname{M}_{2g}(\mathbb{Z})$ such that each Tate module $T_\ell X$ has a $\mathbb{Z}_\ell$-basis on which the action of $u$ is given by $A$.
description: 3 pages
Additional file 1 of Kinetic modelling of the solid–liquid extraction process of polyphenolic compounds from apple pomace: influence of solvent composition and temperature
Creators: name: Hobbi, Parinaz
name: Okoro, Oseweuba Valentine
name: Delporte, Christine
name: Alimoradi, Houman
name: Podstawczyk, Daria
name: Nie, Lei
name: Bernaerts, Katrien V.
name: Shavandi, Amin
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Inorganic Chemistry
subject: Plant Biology

description: Additional file 1. Statistical significance of process variables of temperature and time on total polyphenol (TPC) extraction.
Efficient Hidden-Variable Simulation of Measurements in Quantum Experiments
Creators: name: Dakic, Borivoje
name: Suvakov, Milovan
name: Paterek, Tomasz
name: Brukner, Caslav
Publisher: name: arXiv
Year: 2008
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We prove that the results of a finite set of general quantum measurements on an arbitrary dimensional quantum system can be simulated using a polynomial (in measurements) number of hidden-variable states. In the limit of infinitely many measurements, our method gives models with the minimal number of hidden-variable states, which scales linearly with the number of measurements. These results can find applications in foundations of quantum theory, complexity studies and classical simulations of quantum systems.
description: 4 pages, 1 figure, published version