cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Assessment of body composition in spinal cord injury: A scoping review.
Creators: name: Van Der Scheer, Jan W
name: Totosy De Zepetnek, Julia O
name: Blauwet, Cheri
name: Brooke-Wavell, Katherine
name: Graham-Paulson, Terri
name: Leonard, Amber N
name: Webborn, Nick
name: Goosey-Tolfrey, Victoria L
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021

description: The objective of this scoping review was to map the evidence on measurement properties of body composition tools to assess whole-body and regional fat and fat-free mass in adults with SCI, and to identify research gaps in order to set future research priorities. Electronic databases of PubMed, EMBASE and the Cochrane library were searched up to April 2020. Included studies employed assessments related to whole-body or regional fat and/or fat-free mass and provided data to quantify measurement properties that involved adults with SCI. All searches and data extractions were conducted by two independent reviewers. The scoping review was designed and conducted together with an expert panel (n = 8) that represented research, clinical, nutritional and lived SCI experience. The panel collaboratively determined the scope and design of the review and interpreted its findings. Additionally, the expert panel reached out to their professional networks to gain further stakeholder feedback via interactive practitioner surveys and workshops with people with SCI. The research gaps identified by the review, together with discussions among the expert panel including consideration of the survey and workshop feedback, informed the formulation of future research priorities. A total of 42 eligible articles were identified (1,011 males and 143 females). The only tool supported by studies showing both acceptable test-retest reliability and convergent validity was whole-body dual-energy x-ray absorptiometry (DXA). The survey/workshop participants considered the measurement burden of DXA acceptable as long as it was reliable, valid and would do no harm (e.g. radiation, skin damage). Practitioners considered cost and accessibility of DXA major barriers in applied settings. The survey/workshop participants expressed a preference towards simple tools if they could be confident in their reliability and validity. This review suggests that future research should prioritize reliability and validity studies on: (1) DXA as a surrogate 'gold standard' tool to assess whole-body composition, regional fat and fat-free mass; and (2) skinfold thickness and waist circumference as practical low-cost tools to assess regional fat mass in persons with SCI, and (3) females to explore potential sex differences of body composition assessment tools. Registration review protocol: CRD42018090187 (PROSPERO).
Straight-sided beer and cider glasses to reduce alcohol sales for on-site consumption: A randomised crossover trial in bars.
Creators: name: Brocklebank, Laura A
name: Blackwell, Anna K M
name: Marteau, Theresa M
name: Hollands, Gareth J
name: Fletcher, Paul C
name: De-Loyde, Katie
name: Morris, Richard W
name: Pilling, Mark A
name: Pechey, Rachel
name: Maynard, Olivia M
name: Attwood, Angela S
name: Munafò, Marcus R
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: alcohol consumption
Choice Architecture
Nudging
Glass Shape
Humans
Cross-Over Studies
Alcohol Drinking
Commerce
Alcoholic Beverages
Beer
England

description: BackgroundStraight-sided glasses can slow the rate of lager consumption in a laboratory setting compared with curved glasses. Slower drinking rates may lower overall alcohol consumption. Glass shape is therefore a potential target for intervention. The aim of this randomised crossover trial was to estimate the impact of serving draught beer and cider in straight-sided glasses, compared with usual, predominantly curved glasses, on alcohol sales for on-site consumption in bars.MethodsTwenty-four bars in England completed two intervention periods (A) and two control periods (B) in a randomised order: 1) BABA; 2) BAAB; 3) ABBA; or 4) ABAB. Each period lasted two weeks and involved serving draught beer and cider in either straight-sided glasses (A) or the venue's usual glasses (≥75% curved; B). The primary outcome was the mean volume (in litres) of draught beer and cider sold weekly, compared between A and B periods using a paired-samples t-test on aggregate data. A regression model adjusted for season, order, special events, and busyness.FindingsMean weekly volume sales of draught beer and cider was 690·9 L (SD 491·3 L) across A periods and 732·5 L (SD 501·0 L) across B periods. The adjusted mean difference (A minus B) was 8·9 L per week (95% CI -45·5 to 63·3; p = 0·737).InterpretationThis study provides no clear evidence that using straight-sided glasses, compared with usual, predominantly curved glasses, reduces the volume of draught beer and cider sold for on-site consumption in bars.
Bralorne-Takla mercury mine : innovative risk management and reclamation
Creators: name: Runnells, Joanna
name: McConkey, Trevor
name: Gillett, Tony
name: Power, Beth
Publisher: name: The University of British Columbia
Year: 2

description: The historic Bralorne-Takla mercury mine is located north of Fort St. James, B.C. within the traditional territory of the Takla Lake First Nation (TLFN). The wastes, equipment, and other materials remained until B.C.’s Crown Contaminated Sites Program (CCSP) began investigations in 2005. Working in partnership with TLFN, remediation and reclamation was completed in 2017. Investigation confirmed the presence of unacceptable risks to human health and ecological receptors. The CCSP and the TLFN collaboratively identified remedial objectives including protecting of human health and the environment and returning the mine site to forest ecosystem. The remedial approach included capping mine openings, demolition of structures, off-site disposal of Hazardous Waste; consolidation of non-Hazardous Waste into two on-site landfills; revegetation; and implementation of administrative risk controls to protect future site users. The cover design included innovative elements to support forest growth. Selection of native species for seed mix, shrub and trees replanting focused on returning the mine site to a forest ecosystem and supporting traditional use of the land. Monitoring of covers, drainage systems, landfill gases, water quality, vegetation performance, and administrative (land use) risk controls is ongoing. Additional monitoring includes ambient mercury vapour monitoring and biomonitoring.
Algorithms for polynomials in two variables
Creators: name: Neumann, Walter D.
name: Wightwick, Penelope G.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Algebraic Geometry (math.AG)
subject: FOS: Mathematics
subject: 14E09; 14E35

description: Vladimir Shpilrain and Jie-Tai Yu have asked for an effective algorithm to decide if two elements of C[x,y] are related by an automorphism of C[x,y]. We describe here an efficient algorithm that decides this question and finds the automorphism if it exists. The algorithm is due to the second author, who described it in terms of Newton polygons, with C replaceable by a field of any characteristic. Here we describe it in terms of splice diagrams, which gains some efficiency at cost of generality (it currently applies only to characteristic zero). Part of the purpose of this paper is to give an exposition of the use of splice diagrams in studying C[x,y].
description: Written for Proceedings of the Conference on Combinatorial and Computational Algebra, Hong Kong, May 1999
Girding the loins? Direct evidence of the use of a medieval English parchment birthing girdle from biomolecular analysis.
Creators: name: Fiddyment, Sarah
name: Goodison, Natalie J
name: Brenner, Elma
name: Signorello, Stefania
name: Price, Kierri
name: Collins, Matthew J
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Proteomics
Medieval
Stains
Parchment
Birth Girdle

description: In this paper, we describe palaeoproteomic evidence obtained from a stained medieval birth girdle using a previously developed dry non-invasive sampling technique. The parchment birth girdle studied (Wellcome Collection Western MS. 632) was made in England in the late fifteenth century and was thought to be used by pregnant women while giving birth. We were able to extract both human and non-human peptides from the manuscript, including evidence for the use of honey, cereals, ovicaprine milk and legumes. In addition, a large number of human peptides were detected on the birth roll, many of which are found in cervico-vaginal fluid. This suggests that the birth roll was actively used during childbirth. This study is, to our knowledge, the first to extract and analyse non-collagenous peptides from a birth girdle using this sampling method and demonstrates the potential of this type of analysis for stained manuscripts, providing direct biomolecular evidence for active use.
Translation lengths in Out(F_n)
Creators: name: Alibegovic, Emina
Publisher: name: arXiv
Year: 2000
Subjects: subject: Group Theory (math.GR)
subject: Geometric Topology (math.GT)
subject: FOS: Mathematics
subject: 57M07, 20F28

description: We prove that all elements of infinite order in $Out(F_n)$ have positive translation lengths; moreover, they are bounded away from zero. Consequences include a new proof that solvable subgroups of $Out(F_n)$ are finitely generated and virtually abelian and the new result that such subgroups are quasi-convex.
description: Corrected typos
Reconsidering the Tribune in Early Gothic Architecture of Twelfth-Century Northern France
Creators: Griggs, Nicole C.
Publisher: name: Columbia University
Year: 2017
Subjects: subject: Art
subject: Architecture
subject: FOS: Civil engineering
subject: Architecture, Gothic

description: This work reconsiders the tribune, its functional and symbolic importance in Gothic style architecture of twelfth-century France. Three case studies, the cathedrals of Notre-Dame of Noyon and Senlis and the priory church of Saint-Leu at Saint-Leu-d’Esserent, serve as a means to examine the origins, function and medieval conceptions of this enigmatic second story. An analysis of the cathedral fabric, together with the episcopal palace and chapel, in conjunction with an examination of the sociological and political context are undertaken in an effort to start a new dialogue regarding this architectural entity, long neglected in the discourse of Gothic architecture. The outlier in this study is the Cluniac priory of Saint-Leu, constructed with a tribune-like elevation yet lacking a proper tribune; the priory serves as a foil with which to test the assumptions surrounding the cathedral case studies. The careful examination of evidence reveals a nuanced understanding of this architectural entity, undermining the traditional narrative that holds it to be purely a constructional device used by medieval builders in the race for taller, more spacious churches. This new perspective situates the tribune in the broader context of the episcopal complex as an architectural entity physically and symbolically linking the different buildings of the cathedral, episcopal chapel and palace. Finding its roots in royal and imperial architectural complexes of the Byzantine and medieval empires the tribunes of Notre-Dame of Noyon and Senlis express propriety befitting the stature of the bishop and his cathedral, while this second story as a space of devotion confirms its spiritual supremacy. Notably, the use of this architectural form at this time occurs when bishops sought to reassert their authority, following a period of institutional weakness.
Cations Regulate Membrane Attachment and Functionality of DNA Nanostructures.
Creators: name: Morzy, Diana
name: Rubio-Sánchez, Roger
name: Joshi, Himanshu
name: Aksimentiev, Aleksei
name: Di Michele, Lorenzo
name: Keyser, Ulrich F
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021

description: The interplay between nucleic acids and lipids underpins several key processes in molecular biology, synthetic biotechnology, vaccine technology, and nanomedicine. These interactions are often electrostatic in nature, and much of their rich phenomenology remains unexplored in view of the chemical diversity of lipids, the heterogeneity of their phases, and the broad range of relevant solvent conditions. Here we unravel the electrostatic interactions between zwitterionic lipid membranes and DNA nanostructures in the presence of physiologically relevant cations, with the purpose of identifying new routes to program DNA-lipid complexation and membrane-active nanodevices. We demonstrate that this interplay is influenced by both the phase of the lipid membranes and the valency of the ions and observe divalent cation bridging between nucleic acids and gel-phase bilayers. Furthermore, even in the presence of hydrophobic modifications on the DNA, we find that cations are still required to enable DNA adhesion to liquid-phase membranes. We show that the latter mechanism can be exploited to control the degree of attachment of cholesterol-modified DNA nanostructures by modifying their overall hydrophobicity and charge. Besides their biological relevance, the interaction mechanisms we explored hold great practical potential in the design of biomimetic nanodevices, as we show by constructing an ion-regulated DNA-based synthetic enzyme.
Vicia sativa subsp. nigra (L.) Ehrh.
Creators: name: Zhou, Ya-Dong
name: Mwachala, Geoffrey
name: Hu, Guang-Wan
name: Wang, Qing-Feng
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Vicia
Vicia sativa
Vicia sativa l. subsp. nigra (l.) ehrh.

description: * Vicia sativa L. subsp. nigra (L.) Ehrh.  —
Habit: Climber.
Habitat: BZ. Distribution: IV.
 Voucher: Near Meru Mount Kenya Lodge, Alt. 2 994 m, 21 Jul. 2014, SAJIT 001993 (HIB).
Reference: N/A.
description: Published as part of Zhou, Ya-Dong, Mwachala, Geoffrey, Hu, Guang-Wan & Wang, Qing-Feng, 2022, Annotated checklist of the vascular plants of Mount Kenya, East Africa, pp. 1-108 in Phytotaxa 546 (1) on page 48, DOI: 10.11646/phytotaxa.546.1.1, http://zenodo.org/record/6550464
Structure and diffusion time scales of disordered clusters
Creators: name: Cuansing, E.
name: Nakanishi, H.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The eigenvalue spectra of the transition probability matrix for random walks traversing critically disordered clusters in three different types of percolation problems show that the random walker sees a developing Euclidean signature for short time scales as the local, full-coordination constraint is iteratively applied.
description: 5 pages, 4 figures, submitted to Physics Letters A
Additional file 4: of The Solanum chacoense Fertilization-Related Kinase 3 (ScFRK3) is involved in male and female gametophyte development
Creators: name: Daigle, Caroline
name: Mazin, Benjamin
name: Matton, Daniel
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Developmental Biology

description: Figure S3. ScMKK3 and ScMPK13 expression and localization. A. Expression profiling on different tissues for ScMKK3 and ScMPK13 using semi-quantitative RT-PCRs. B. Protein localization of ScMMK3 and ScMPK13 using microparticle bombardment. ScMKK3-GFP localization in onion cell (i) and DIC image. ScMPK13-GFP localization in onion cell (iii) and DIC image (iv). Scale bars: 50â Îźm. (PDF 236 kb)
On a mode geometry in a sample of subdwarf B stars observed by TESS
Creators: name: Sahoo, Sumanta Kumar
name: Baran, Andrzej
name: Sanjayan, Sachu
name: Ostrowski, Jakub
Publisher: name: Zenodo
Year: 2019
Subjects: subdwarf B stars, TESS, g-mode, Echelle diagram

description: We present our results of a mode identification in several pulsating subdwarf B (sdB) stars observed by TESS. Most of the stars we analysed were monitored with the short cadence data, while only one with the long cadence data. All stars in our sample are rich g-mode pulsators. We found no multiplets and we based our identification solely on the asymptotic period spacing using KS tests and Echelle diagrams. We also found many candidates for trapped modes.The mode identification will surely help us to better constrain pulsation models of sdB stars.
Reconstructing community assembly: the impacts of alternate histories on contemporary ecology
Creators: Weeks, Brian
Publisher: name: Columbia University
Year: 2017
Subjects: subject: Ecology
subject: FOS: Biological sciences
subject: Evolution (Biology)
subject: Biotic communities
subject: Ecosystem management

description: The complexity of ecological and evolutionary processes that govern species distributions has long presented a challenge to understanding community assembly history. The work presented here develops a conceptual framework for integrating phylogenetics and biogeography to reconstruct the assembly of communities, provides empirical support for the broad applicability of this framework, tests whether morphology can serve as a proxy for behavioral ecology, and develops a novel metric of assemblage vulnerability and shows how vulnerability is related to biogeographic history. This dissertation demonstrates the need to merge evolution and ecology to reconstruct community assembly, and provides a framework for doing so. Further, the findings presented here suggest that such an interdisciplinary approach has the potential to both reveal fundamental processes shaping the assembly of natural systems, and to illuminate the functions and properties of ecosystems based on the evolutionary histories of their constituent species.
title: Безопасность жизнедеятельности. Основы чрезвычайных ситуаций
title: Учебное пособие для СПО
titleType: Subtitle
Creators: name: Курбатов В.А.
name:  Рысин Ю.С.
name:  Яблочников С.Л.
Publisher: name: Профобразование
Year: 2020

description: В учебном пособии рассмотрены особенности безопасного поведения и жизнедеятельности при чрезвычайных ситуациях природного и техногенного происхождения, вопросы защиты населения и территорий от чрезвычайных ситуаций, а также террористических атак. Представленное издание отличается большим объемом иллюстративного материала для лучшего усвоения, запоминания и восприятия информации. Авторами рассматриваются наиболее острые вопросы, стоящие в настоящее время перед населением планеты и требующие ежедневного разрешения не только в средствах массовой информации. Соответствует требованиям Федерального государственного образовательного стандарта среднего профессионального образования. Предназначено для изучения дисциплины «Безопасность жизнедеятельности» (раздел «Основы чрезвычайных ситуаций») студентами всех специальностей и профессий.
Vigna friesiorum Harms
Creators: name: Zhou, Ya-Dong
name: Mwachala, Geoffrey
name: Hu, Guang-Wan
name: Wang, Qing-Feng
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Vigna
Vigna friesiorum

description: Vigna friesiorum Harms  —
Habit: Climber.
Habitat: LMWF, LMDF; up to 2 400 m. Distribution: II.
Voucher: N/A.
 References: Fries & Fries (1927b), Gillett et al. (1971b), Agnew (2013).
description: Published as part of Zhou, Ya-Dong, Mwachala, Geoffrey, Hu, Guang-Wan & Wang, Qing-Feng, 2022, Annotated checklist of the vascular plants of Mount Kenya, East Africa, pp. 1-108 in Phytotaxa 546 (1) on page 48, DOI: 10.11646/phytotaxa.546.1.1, http://zenodo.org/record/6550464
Run-and-tumble motion in a harmonic potential: field theory and entropy production
Creators: name: Garcia-Millan, Rosalba
name: Pruessner, Gunnar
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Paper
PAPER: Classical statistical mechanics, equilibrium and non-equilibrium
active matter
exact results
self-propelled particles
stochastic particle dynamics

description: Abstract: Run-and-tumble (RnT) motion is an example of active motility where particles move at constant speed and change direction at random times. In this work we study RnT motion with diffusion in a harmonic potential in one dimension via a path integral approach. We derive a Doi-Peliti field theory and use it to calculate the entropy production and other observables in closed form. All our results are exact.
Second post-Newtonian gravitational radiation reaction for two-body systems: Nonspinning bodies
Creators: name: Gopakumar, A.
name: Iyer, Bala R.
name: Iyer, Sai
Publisher: name: arXiv
Year: 1997
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Starting from the recently obtained 2PN accurate forms of the energy and angular momentum fluxes from inspiralling compact binaries, we deduce the gravitational radiation reaction to 2PN order beyond the quadrupole approximation - 4.5PN terms in the equation of motion - using the refined balance method proposed by Iyer and Will. We explore critically the features of their construction and illustrate them by contrast to other possible variants. The equations of motion are valid for general binary orbits and for a class of coordinate gauges. The limiting cases of circular orbits and radial infall are also discussed.
description: 38 pages, REVTeX, no figures, to appear in Phys. Rev. D
title: Zur Kreiszylinderschale unter Manteldruck
Creators: name: Dierks, Klaus
Publisher: name: Vieweg
Year: 1965
Subjects: subject: 62

description: Auf Grund des Prinzips vom stationären Wert der potentiellen Energie werden mit Hilfe des Ritzschen Verfahrens Kraft-Verformungskurven der Kreiszylinderschale unter Manteldruck im überkritischen Bereich ermittelt.
Als Instabilitätskriterium wird die von Pflüger für die axialgedrückte Kreiszylinderschale vorgeschlagene Hypothese über die zum Durchschlagen führenden Störverschiebungen benutzt.
description: On the basis of the principle of the stationary value of potential energy, force-deflection diagrams in the post-buckling range of cylindrical shells subjected to lateral pressure are found by the Ritz-method.
The hypothesis about the influence of disturbances, proposed by Pflüger for the axially compressed cylindrical shell, is used as an instability criterion.
Vigna parkeri subsp. maranguensis Verdc.
Creators: name: Zhou, Ya-Dong
name: Mwachala, Geoffrey
name: Hu, Guang-Wan
name: Wang, Qing-Feng
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Vigna
Vigna parkeri
Vigna parkeri baker subsp. maranguensis (taub.) verdc.

description: Vigna parkeri Baker subsp. maranguensis (Taub.) Verdc.  —
Habit: Climber.
Habitat: LMWF; up to 2 900 m. Distribution: II.
 Voucher: Kamweti Track, Alt. 2 168 m, 31 Jan. 2015, SAJIT 003042 (HIB).
 References: Fries & Fries (1927b), Gillett et al. (1971b), Bussmann (1993, 1994), Bussmann & Beck (1995a, 1998), Agnew (2013).
description: Published as part of Zhou, Ya-Dong, Mwachala, Geoffrey, Hu, Guang-Wan & Wang, Qing-Feng, 2022, Annotated checklist of the vascular plants of Mount Kenya, East Africa, pp. 1-108 in Phytotaxa 546 (1) on page 48, DOI: 10.11646/phytotaxa.546.1.1, http://zenodo.org/record/6550464
Diversity, Stability, Recursivity, and Rule Generation in Biological System: Intra-inter Dynamics Approach
Creators: name: Kaneko, Kunihiko
Publisher: name: arXiv
Year: 1998
Subjects: subject: Adaptation and Self-Organizing Systems (nlin.AO)
subject: Quantitative Biology (q-bio)
subject: FOS: Physical sciences
subject: FOS: Biological sciences

description: Basic problems for the construction of a scenario for the Life are discussed. To study the problems in terms of dynamical systems theory, a scheme of intra-inter dynamics is presented. It consists of internal dynamics of a unit, interaction among the units, and the dynamics to change the dynamics itself, for example by replication (and death) of units according to their internal states. Applying the dynamics to cell differentiation, isologous diversification theory is proposed. According to it, orbital instability leads to diversified cell behaviors first. At the next stage, several cell types are formed, first triggered by clustering of oscillations, and then as attracting states of internal dynamics stabilized by the cell-to-cell interaction. At the third stage, the differentiation is determined as a recursive state by cell division. At the last stage, hierarchical differentiation proceeds, with the emergence of stochastic rule for the differentiation to sub-groups, where regulation of the probability for the differentiation provides the diversity and stability of cell society. Relevance of the theory to cell biology is discussed.
description: 19 pages, Int.J. Mod. Phes. B (in press)
Analysis of single-cell RNA sequencing data based on autoencoders
Creators: name: Tangherloni, Andrea
name: Ricciuti, Federico
name: Besozzi, Daniela
name: Liò, Pietro
name: Cvejic, Ana
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Research
Autoencoders
scRNA-Seq
Dimensionality reduction
Clustering
Batch correction
Data integration

description: Abstract: Background: Single-cell RNA sequencing (scRNA-Seq) experiments are gaining ground to study the molecular processes that drive normal development as well as the onset of different pathologies. Finding an effective and efficient low-dimensional representation of the data is one of the most important steps in the downstream analysis of scRNA-Seq data, as it could provide a better identification of known or putatively novel cell-types. Another step that still poses a challenge is the integration of different scRNA-Seq datasets. Though standard computational pipelines to gain knowledge from scRNA-Seq data exist, a further improvement could be achieved by means of machine learning approaches. Results: Autoencoders (AEs) have been effectively used to capture the non-linearities among gene interactions of scRNA-Seq data, so that the deployment of AE-based tools might represent the way forward in this context. We introduce here scAEspy, a unifying tool that embodies: (1) four of the most advanced AEs, (2) two novel AEs that we developed on purpose, (3) different loss functions. We show that scAEspy can be coupled with various batch-effect removal tools to integrate data by different scRNA-Seq platforms, in order to better identify the cell-types. We benchmarked scAEspy against the most used batch-effect removal tools, showing that our AE-based strategies outperform the existing solutions. Conclusions: scAEspy is a user-friendly tool that enables using the most recent and promising AEs to analyse scRNA-Seq data by only setting up two user-defined parameters. Thanks to its modularity, scAEspy can be easily extended to accommodate new AEs to further improve the downstream analysis of scRNA-Seq data. Considering the relevant results we achieved, scAEspy can be considered as a starting point to build a more comprehensive toolkit designed to integrate multi single-cell omics.
Correlation kinetic energy of many-electron systems: a modified Colle-Salvetti approach
Creators: name: Ragot, Sebastien
name: Cortona, Pietro
Publisher: name: arXiv
Year: 2002
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Atomic Physics (physics.atom-ph)
subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: The Colle and Salvetti approach [Theoret. Chim. Acta, 37, 329 (1975)] to the calculation of the correlation energy of a system is modified in order to explicitly include into the theory the kinetic contribution to the correlation energy. This is achieved by deducing from a many electrons wave function, including the correlation effects via a Jastrow factor, an approximate expression of the one-electron reduced density matrix. Applying the latter to the homogeneous electron gas, an analytic expression of the correlation kinetic energy is derived. The total correlation energy of such a system is then deduced from its kinetic contribution inverting a standard procedure. At variance of the original Colle-Salvetti theory, the parameters entering in both the kinetic correlation and the total correlation energies are determined analytically, leading to a satisfactory agreement with the results of Perdew and Wang [Phys. Rev. B 45, 13244 (1992)]. The resulting (parameter-free) expressions give rise to a modified-local-density approximation that can be used in self-consistent density-functional calculations. We have performed such calculations for a large set of atoms and ions and we have found results for the correlation energies and for the ionization potentials which improve those of the standard local-density approximation.
description: 26 pages
title: Экономикалық теорияның негіздері
Creators: name: ELS IPR BOOKS
Publisher: name: EDP Hub (Идипи Хаб), Ай Пи Ар Медиа
Year: 2024

description: Оқу құралында экономикалық теорияның теориялық негіздері, оның әлемнің және дамушы елдердің геоэкономикасындағы рөлінің өсуі терең қарастырылған. Экономикалық теория негіздерін қалыптастыру және дамыту ерекшеліктері айқындалды, дағдарысқа дейінгі, дағдарыс кезеңдерінде және қазіргі уақытта Қазақстан Республикасында экономикалық теория негіздерін қолдану тиімділігіне тенденциялар ашылып, бағалау берілді. Басылымда көптеген фактілер мен мысалдар арқылы авторлар экономикалық теорияның пайда болуы мен қалыптасу кезеңдерін кеңінен және жан-жақты зерттеді. Оқу құралының мазмұны мен композициялық құрылымы курстың бағдарламасына сәйкес келеді, кейбір толықтырулар мен өзгерістер енгізіліп, «Экономикалық теория негіздері» пәнінің барлық бөлімдерін қамтиды. Басылымның авторлары курстың бағдарламасында қарастырылған экономикалық теорияның негіздерін ұйымдастырудың барлық мәселелерін толық баяндауды талап етпейді, бірақ бұл кітап жоғары оқу орындарының экономикалық мамандықтарының студенттері мен магистранттары үшін қажетті құрал болады деп үміттенеді.
Commutation Relations in Mesoscopic Electric Circuits
Creators: name: Li, You-Quan
Publisher: name: arXiv
Year: 2000
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: In the talk, I briefly demonstrate the quantum theory for mesoscopic electric circuits and its applications. In the theory, the importance of the charge discreteness in a mesoscopic electric circuit is addressed. As a result, a new kind of commutation relation for electric charge and current occurred inevitably. The charge representation, canonical current representation and pseudo-current representation are discussed extensively. It not only provides a concrete realization of mathematical models which discuss the space quantization in high energy physics and quantum gravity but also presents a sequence of applications in condensed matter physics from a different point of view. A possible generalization to coupled circuits is also proposed.
description: 7 pages, talk at ``Spin-Statistics Connection and Commutation Relations'' Capri 2000
title: Eine exakte Lösung der instationären Couette-Strömung
Creators: name: Steinheuer, Johannes
Publisher: name: Vieweg
Year: 1965
Subjects: subject: Brunsvicensien der Universitätsbibliothek Braunschweig
subject: Abhandlungen der BWG
subject: 53

description: Es wird eine exakte Lösung der instationären inkompressiblen Couette-Strömung für den Fall angegeben, daß bei einer voll ausgebildeten Couette-Strömung die zunächst ruhende Begrenzungswand plötzlich auf eine konstante Geschwindigkeit von beliebigem Betrag gebracht wird. Es wird gezeigt, daß der Reibungsbeiwert an der plötzlich in Gang gesetzten Wand für kleine Zeiten extrem hohe Werte annimmt. An Hand einiger Beispielrechnungen wird der physikalische Sachverhalt verdeutlicht.
description: An exact solution of the non-steady incompressible Couette-flow is presented for the case where in a fully developed Couette-flow the boundary initially at rest is suddenly accelerated to an arbitrary velocity. It is shown tht the skin friction coefficient at the suddenly accelerated wall assumes extremely high values for small [...] of time. The physical aspect of the problem is illustrated by a few sample calculations.
Coryzorhaphis carneolus Erichson 1848
Creators: name: Castro-Huertas, Valentina
name: Schwertner, Cristiano F.
name: Fernández, Fernando
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Pentatomidae
Coryzorhaphis
Coryzorhaphis carneolus

description: Coryzorhaphis carneolus Erichson, 1848
Examined material. META. Río Guamal, 450m, 1 jul 1942, L. Richter / ICN 0 55835 (1m, ICN); Villavicencio, Vda. La Vanguardia, Pozo Azul, jameo transecto, 18 apr 2005, Curso sistemática (1f, ICN).
Comments. First record of this species for Colombia. This genus has six described species. This species has been recorded for Guyana, French Guiana, Brazil, Ecuador, Peru and Bolivia (Thomas 1992).
description: Published as part of Castro-Huertas, Valentina, Schwertner, Cristiano F. & Fernández, Fernando, 2015, New records of stink bugs (Hemiptera: Pentatomidae) from Colombia, pp. 553-566 in Zootaxa 3973 (3) on page 554, DOI: 10.11646/zootaxa.3973.3.9, http://zenodo.org/record/236474
Vigna schimperi Baker
Creators: name: Zhou, Ya-Dong
name: Mwachala, Geoffrey
name: Hu, Guang-Wan
name: Wang, Qing-Feng
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Vigna
Vigna schimperi

description: Vigna schimperi Baker  —
Habit: Climber.
Habitat: LMDF; 1 300–2 800 m. Distribution: II.
 Voucher: Near Ontulili Forest Station, Alt. 2 198 m, 5 Aug. 2015, SAJIT 003119 (HIB).
 References: Fries & Fries (1927b), Gillett et al. (1971b), Bussmann (1994), Agnew (2013).
description: Published as part of Zhou, Ya-Dong, Mwachala, Geoffrey, Hu, Guang-Wan & Wang, Qing-Feng, 2022, Annotated checklist of the vascular plants of Mount Kenya, East Africa, pp. 1-108 in Phytotaxa 546 (1) on page 48, DOI: 10.11646/phytotaxa.546.1.1, http://zenodo.org/record/6550464
title: Der St. Galler Klosterplan - Schema oder Bauplan?
Creators: name: Hecht, Konrad
Publisher: name: Vieweg
Year: 1965
Subjects: subject: Brunsvicensien der Universitätsbibliothek Braunschweig
subject: Abhandlungen der BWG
subject: 72

description: Der St. Galler Plan ist keine Schemazeichnung, sondern ein Fluchtlinienplan. In seiner ganzen Ausdehnung ist er über einem einheitlichen 2 1/2 Fuß großen Raster, den Fuß zu 34,0cm, gezeichnet. Der Maßstab des Planes - nach Schwinden des Pergaments heute etwa 1:200 - war ursprünglich 1:192 entsprechend 1/16" - 1'.
description: The plan of St. Gall monastery is not a schematic drawing but an accurate single line diagram which could have been used for construction. Over its entire area it is drawn on a uniform 2 1/2ft. grid, at 34,0cm per ft. The scale of the plan was originally 1:192 or 1/16"-1', while at present it corresponds to roughly 1:200 due to shrinkage of the parchment.
Fluctuation-Driven Quantum Phase Transitions in Clean Itinerant Ferromagnets
Creators: name: Belitz, D.
name: Kirkpatrick, T. R.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: The quantum phase transition in clean itinerant ferromagnets is analyzed. It is shown that soft particle-hole modes invalidate Hertz's mean-field theory for $d \leq 3$. A renormalized mean-field theory predicts a fluctuation-induced first order transition for $1 < d \leq 3$, whose stability is analyzed by renormalization group techniques. Depending on microscopic parameter values, the first order transition can be stable, or be pre-empted by a fluctuation-induced second order transition. The critical behavior at the latter is determined. The results are in agreement with recent experiments.
description: 4 pp., REVTeX, no figs; final version as published
title: Production and purification of molecular ²²⁵Ac at CERN-ISOLDE
Creators: name: Au, M.
name: Nies, L.
name: Stegemann, S.
name: Athanasakis-Kaklamanakis, M.
name: Cocolios, T. E.
name: Fischer, P.
name: Giesel, P. F.
name: Johnson, J. D.
name: Köster, U.
name: Lange, D.
name: Mougeot, M.
name: Reilly, J.
name: Schlaich, M.
name: Schweiger, Ch.
name: Schweikhard, L.
name: Wienholtz, F.
name: Wojtaczka, W.
name: Düllmann, Ch. E.
name: Rothe, S.
Publisher: name: Springer
Year: 2025

description: The radioactive nuclide ²²⁵Ac is one of the few promising candidates for cancer treatment by targeted-α-therapy, but worldwide production of ²²⁵Ac faces significant limitations. In this work, the Isotope Separation On-Line method was used to produce actinium by irradiating targets made of uranium carbide and thorium carbide with 1.4-GeV protons. Actinium fluoride molecules were formed, ionized through electron impact, then extracted and mass-separated as a beam of molecular ions. The composition of the mass-selected ion beam was verified using time-of-flight mass spectrometry, α- and γ-ray decay spectrometry. Extracted quantities of ²²⁵Ac¹⁹F₂⁺ particles per μC of incident protons were 3.9(3)×10⁷ from a uranium carbide target and 4.3(4)×10⁷ for a thorium carbide target. Using a magnetic mass separator, the long-lived contamination ²²⁷Ac is suppressed to <5.47×10⁻⁷ (95% confidence interval) with respect to ²²⁵Ac by activity. Measured rates scale to collections of 108 kBqμA⁻¹h⁻¹ of directly produced ²²⁵Ac¹⁹F₂⁺.
title: Экономикалық теорияның негіздері
Creators: name: ELS IPR BOOKS
Publisher: name: EDP Hub (Идипи Хаб), Профобразование
Year: 2024

description: Оқу құралында экономикалық теорияның теориялық негіздері, оның әлемнің және дамушы елдердің геоэкономикасындағы рөлінің өсуі терең қарастырылған. Экономикалық теория негіздерін қалыптастыру және дамыту ерекшеліктері айқындалды, дағдарысқа дейінгі, дағдарыс кезеңдерінде және қазіргі уақытта Қазақстан Республикасында экономикалық теория негіздерін қолдану тиімділігіне тенденциялар ашылып, бағалау берілді. Басылымда көптеген фактілер мен мысалдар арқылы авторлар экономикалық теорияның пайда болуы мен қалыптасу кезеңдерін кеңінен және жан-жақты зерттеді. Оқу құралының мазмұны мен композициялық құрылымы курстың бағдарламасына сәйкес келеді, кейбір толықтырулар мен өзгерістер енгізіліп, «Экономикалық теория негіздері» пәнінің барлық бөлімдерін қамтиды. Экономикалық мамандықтардың ТжКБ студенттеріне ұсынылады.
Additional file 1: of GenePy - a score for estimating gene pathogenicity in individuals using next-generation sequencing data
Creators: name: E. Mossotto
name: J. Ashton
name: L. OâGorman
name: R. Pengelly
name: R. Beattie
name: B. MacArthur
name: S. Ennis
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Table S1. All single nucleotide variants in the NOD2 gene used in GenePy validation. Figure S1. Median whole gene GenePyuncorrected score profiles observed across the cohort of 508 patients with WES data depicted separately for each of the sixteen deleteriousness metrics. Figure S2. Median whole gene GenePycgl score profiles observed across the cohort of 508 patients with WES data depicted separately for each of the sixteen deleteriousness metrics. Figure S3. Ethnicity imputation. Figure S4. GenePy scores profiles for the NOD2 gene in the CD and control groups for each of the sixteen implemented deleteriousness metrics. (DOCX 1054 kb)
Genetically predicted circulating B vitamins in relation to digestive system cancers
Creators: name: Yuan, Shuai
name: Carter, Paul
name: Vithayathil, Mathew
name: Kar, Siddhartha
name: Mason, Amy M.
name: Burgess, Stephen
name: Larsson, Susanna C.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Article
/692/53/2423
/692/699/67/1504
/692/699/67/68
article

description: Funder: United Kingdom Research and Innovation Future Leaders Fellowship (MR/T043202/1)
description: Funder: EC‐Innovative Medicines Initiative (BigData@Heart)
description: Funder: Sir Henry Dale Fellowship jointly funded by the Wellcome Trust and the Royal Society (204623/Z/16/Z)
description: Abstract: Background: Folate, vitamin B6 and vitamin B12 have been associated with digestive system cancers. We conducted a two-sample Mendelian randomisation study to assess the causality of these associations. Methods: Two, one and 14 independent single nucleotide polymorphisms associated with serum folate, vitamin B6 and vitamin B12 at the genome-wide significance threshold were selected as genetic instruments. Summary-level data for the associations of the vitamin-associated genetic variants with cancer were obtained from the UK Biobank study including 367,561 individuals and FinnGen consortium comprising up to 176,899 participants. Results: Genetically predicted folate and vitamin B6 concentrations were not associated with overall cancer, overall digestive system cancer or oesophageal, gastric, colorectal or pancreatic cancer. Genetically predicted vitamin B12 concentrations were positively associated with overall digestive system cancer (ORSD, 1.12; 95% CI 1.04, 1.21, p = 0.003) and colorectal cancer (ORSD 1.16; 95% CI 1.06, 1.26, p = 0.001) in UK Biobank. Results for colorectal cancer were consistent in FinnGen and the combined ORSD was 1.16 (95% CI 1.08, 1.25, p < 0.001). There was no association of genetically predicted vitamin B12 with any other site-specific digestive system cancers or overall cancer. Conclusions: These results provide evidence to suggest that elevated serum vitamin B12 concentrations are associated with colorectal cancer.
Deliverable D4.4 : Report on the contribution to the standardization
Creators: name: PARAMIO, Tania MARCOS
Publisher: name: Zenodo
Year: 2019
Subjects: standardization

description: This report constitutes Deliverable D4.4, which is part of Task 4.4 “Standardization activities” inside WP4
 “Decision support system development and sustainability analysis”. It is based on the conclusions of
 D4.1, which includes the information on the relevant existing and ongoing standards and the relevant standardization
 technical committees, to facilitate the use of existing knowledge, the compatibility and the
 interoperability of the INCOVER developments. This will facilitate the acceptance and utilization by
 the market of the developed solutions.
 The purpose of this report D4.4 is to describe the interactions developed with the standardization
 Technical Committees and opportunities identified to contribute to the ongoing and future
 standardization developments, following the feedback received from INCOVER partners on D4.1.
Vigna unguiculata (L.) Walp.
Creators: name: Zhou, Ya-Dong
name: Mwachala, Geoffrey
name: Hu, Guang-Wan
name: Wang, Qing-Feng
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Vigna
Vigna unguiculata

description: Vigna unguiculata (L.) Walp.  —
Habit: Climber.
Habitat: LMDF; up to 2 600 m. Distribution: I.
Voucher: N/A.
Reference: Fries & Fries (1927b).
description: Published as part of Zhou, Ya-Dong, Mwachala, Geoffrey, Hu, Guang-Wan & Wang, Qing-Feng, 2022, Annotated checklist of the vascular plants of Mount Kenya, East Africa, pp. 1-108 in Phytotaxa 546 (1) on page 48, DOI: 10.11646/phytotaxa.546.1.1, http://zenodo.org/record/6550464
Effecting change by using innovative techniques in low risk projects
Creators: name: Sahlstrom, David
Publisher: name: The University of British Columbia
Year: 2018

description: The ability to maximize the environmental value of reclamation is often constrained by engineering design criteria and protocol as well as specified standards. While standards minimize the chance of project failures, there are situations where strict adherence has stifled innovation. Evaluating the risks associated with projects can identify lower risk opportunities where innovative techniques can be explored. This paper presents a conceptual framework for evaluating risk and applies it to two scenarios; evaluating stream stabilization projects using rip rap and reclamation of acidic tailings. Cases studies are presented where low risk projects have used innovative techniques that have the potential to shift the paradigm with respect to commonly applied approaches in mine reclamation to improve the environmental values of reclamation.
Additional file 3: of The Solanum chacoense Fertilization-Related Kinase 3 (ScFRK3) is involved in male and female gametophyte development
Creators: name: Daigle, Caroline
name: Mazin, Benjamin
name: Matton, Daniel
Publisher: name: figshare
Year: 2019
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Figure S2. Phylogenetic tree showing the relations between the AtMPKs, SlMPKs and the ScMPKs found in the S. chacoense transcriptome. The MPKs are classified in four groups, from A to D. The tree was made by the Neighbor Joining method using 1000 replicates and rooted with the Arabidopsis BRI1 receptor kinase using MacVector 17 software. Only the kinase domain was used for the alignment. (PDF 155 kb)