cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Krokella Huber Fauna 1993
Creators: name: Huber, John T.
name: Read, Jennifer D.
name: Triapitsyn, Serguei V.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mymaridae
Krokella

description: KROKELLA Huber, 1993
(Figs 500–518)
Krokella Huber, 1993: 349. Type species: Krokella fera Huber, 1993, by original designation.
Diagnosis. Body length 385–485 μm. Face without subantennal sulci (Fig. 501, 513); clava 3-segmented (Figs 500, 504); mandible a minute stub without teeth (Figs 501, 513); ocular apodeme apparently absent but ocular ridge with anterior margin greatly thickened (Fig. 503b); frenum divided medially by longitudinal sulcus (Figs 511, 515); fore wing with venation extending more than half wing length. Male with mandible enormous, crocodile-like (Figs 508, 518); flagellum 9-segmented (Fig. 509).
Discussion. Only two other Nearctic genera, Neostethynium and Stethynium, have the clava 3-segmented. Krokella differs from both by having the fore wing venation extending more than half the wing length. It is similar to Neostethynium based on the very similar male mandible, and to Stethynium based on the longitudinally divided frenum.
Important reference. Huber (1993).
description: Published as part of Huber, John T., Read, Jennifer D. & Triapitsyn, Serguei V., 2020, Illustrated key to genera and catalogue of Mymaridae (Hymenoptera) in America north of Mexico, pp. 1-411 in Zootaxa 4773 (3) on pages 201-202, DOI: 10.11646/zootaxa.4773.1.1, http://zenodo.org/record/3821373
MOESM2 of Role of KIR and CD16A genotypes in colorectal carcinoma genetic risk and clinical stage
Creators: name: Canossi, Angelica
name: Aureli, Anna
name: Beato, Tiziana
name: Rossi, Piero
name: Franceschilli, Luana
name: Sanctis, Flavio
name: Sileri, Pierpaolo
name: Lorenzo, Nicola
name: Buonomo, Oreste
name: Lauro, Davide
name: Venditti, Adriano
name: Sconocchia, Giuseppe
Publisher: name: Figshare
Year: 2016
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 2. A and B haplotypes frequencies and B subtypes in CRC patients and healthy controls.
Additional file 3: Table S1. of Evolution of long centromeres in fire ants
Creators: name: Yu-Ching Huang
name: Chih-Chi Lee
name: Chia-Yi Kao
name: Ni-Chen Chang
name: Lin, Chung-Chi
name: DeWayne Shoemaker
name: Wang, John
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 60506 Virology

description: Identification of the top 10 satellite families in the S. invicta and S. geminata genomes. (PDF 64Â kb)
Caridina weberi De Man 1892
Creators: name: Mazancourt, Valentin de
name: Marquet, Gérard
name: Keith, Philippe
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Atyidae
Caridina
Caridina weberi

description: Key of the Polynesian species of the C. weberi complex
description: Published as part of Mazancourt, Valentin de, Marquet, Gérard & Keith, Philippe, 2019, Revision of freshwater shrimps belonging to Caridina weberi complex (Crustacea: Decapoda: Atyidae) from Polynesia with discussion on their biogeography, pp. 815-847 in Journal of Natural History 53 (13) on page 838, DOI: 10.1080/00222933.2019.1612959, http://zenodo.org/record/3675643
MOESM1 of Consolidated bioprocessing of Populus using Clostridium (Ruminiclostridium) thermocellum: a case study on the impact of lignin composition and structure
Creators: name: Dumitrache, Alexandru
name: Akinosho, Hannah
name: Rodriguez, Miguel
name: Xianzhi Meng
name: Yoo, Chang
name: Natzke, Jace
name: Engle, Nancy
name: Sykes, Robert
name: Tschaplinski, Timothy
name: Wellington Muchero
name: Ragauskas, Arthur
name: Davison, Brian
name: Brown, Steven
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: Plant Biology

description: Additional file 1: Figure A.1. Carbohydrate composition of initially screened Populus biomass. Figure A.2. Fermentation products of Avicel-control CBP cultures. Figure A.3. Carbohydrate content in Populus before and after repeat autoclave sterilization. Figure A.4. Lignin content in Populus before and after repeat autoclave sterilization.
Krokella fera Huber 1993
Creators: name: Huber, John T.
name: Read, Jennifer D.
name: Triapitsyn, Serguei V.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mymaridae
Krokella
Krokella fera

description: Krokella fera Huber, 1993
Krokella fera Huber, 1993: 356. Holotype ♀ (CNC). TL: USA, Florida, Dade Co., Everglades National Park, Long Pine Key. Huber, 1997: 504 (key).
Distribution. USA: FL.
description: Published as part of Huber, John T., Read, Jennifer D. & Triapitsyn, Serguei V., 2020, Illustrated key to genera and catalogue of Mymaridae (Hymenoptera) in America north of Mexico, pp. 1-411 in Zootaxa 4773 (3) on page 206, DOI: 10.11646/zootaxa.4773.1.1, http://zenodo.org/record/3821373
Paraplea brunni
Creators: name: Cook, Jerry L.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Pleidae
Paraplea
Paraplea brunni

description: Paraplea brunni (Kirkaldy, 1898)
New South Wales Sydney, Clarence River, 1919?, Department of Agriculture (17 specimens SEMC); Northern Territory: Salt Creek on Roper Barr Road, 16 km W of Stuart Hwy., 2 X 1992, G. Challet (4 specimens UMC, 1 specimen SHSU); pond at Edith Falls turn off of Hwy. 1, 6 IX 2002, G. Challet (3 specimens UMC); pond on road to Butterfly Gorge, 6.5 km from Douglas Hot Springs, 10 IX 2002, G. Challet (1 specimen UMC); Leeches Lagoon, 51 km S. Kathrine, Hwy. 1, 10 IX 2002, G. Challet (1 specimen UMC); Howard River at Gunn Point Road, 12 IX 2002, G. Challet, (94 specimens UMC, 11 specimens SHSU). Queensland: N. Queensland, Kurada, 12 VIII 1938, R. G. Wind (3 specimens SEMC); N. Queensland, Freshwater Creek Red Lynch, 27 IX 1938, R. G. Wind (2 specimens SEMC); N. Queensland, Alta Beach pool, 28 V 1952, T. E. Woodward (3 specimens SEMC); Laura River, 25 km NE of Laura, CL 1741, 20 VIII 1983, J. T. and D. A. Polhemus (3 specimens USNM); Creek E of Wairuna, 7 IX 1997, G. Challet (4 specimens UMC); White Mountains National Park, Bungeree Creek, 14 III 2011, K. B. Miller (17 specimens UMC), cattle pond along road, 14 III 2011, K. B. Miller (11 specimens UMC). Western Australia: Naasra Creek on road to Wyndham, 7 IX 2002, G. Challet (2 specimens UMC); Maggie Creek on Hwy. to Wyndham, 7 IX 2002, G. Challet (11 specimens UMC); Yearling Creek, 30 km W of Kununurra on Victoria Hwy., 10 IX 2002, G. Challet (2 specimens UMC, 1 specimen SHSU).
description: Published as part of Cook, Jerry L., 2021, Review of the Paraplea Esaki & China (Hemiptera: Heteroptera: Nepomorpha Pleidae) of Australia, with description of a new species, pp. 81-90 in Zootaxa 4985 (1) on page 82, DOI: 10.11646/zootaxa.4985.1.4, http://zenodo.org/record/4929927
Additional file 1: of Research needs and prioritizations for studies linking dietary sugars and potentially related health outcomes
Creators: name: Chung, Mei
name: Wang, Ding
name: Archer, Edward
name: Higgins, Janine
name: Sery Kim
name: Laughlin, Maren
name: Qi, Lu
name: Raatz, Susan
name: Siegel, Richard
name: Slavin, Joanne
name: Steffen, Dan
name: Warshaw, Hope
name: Tang, Alice
Publisher: name: Figshare
Year: 2016
Subjects: subject: Molecular Biology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Report Front Matter & Appendices. (PDF 4393Â kb)
MOESM4 of WhatÂ´s in the tank? Nematodes and other major components of the meiofauna of bromeliad phytotelms in lowland Panama
Creators: name: Zotz, Gerhard
name: Traunspurger, Walter
Publisher: name: Figshare
Year: 2016
Subjects: subject: Molecular Biology
subject: Ecology
subject: FOS: Biological sciences
subject: Marine Biology
subject: Plant Biology
subject: Computational Biology

description: Additional file 4: Figure S2. Shows the relationship of nematode diversity (expressed as Shannon diversity index) and plant size.
MOESM1 of WhatÂ´s in the tank? Nematodes and other major components of the meiofauna of bromeliad phytotelms in lowland Panama
Creators: name: Zotz, Gerhard
name: Traunspurger, Walter
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Molecular Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Plant Biology
subject: Computational Biology

description: Additional file 1: Table S2. Gives the results of an ANCOVA of the data shown in Additional file 3: Figure S1.
Additional file 1: of A survey of tuberculosis infection control practices at the NIH/NIAID/DAIDS-supported clinical trial sites in low and middle income countries
Creators: name: Godfrey, Catherine
name: Tauscher, Gail
name: Hunsberger, Sally
name: Austin, Melissa
name: Scott, Lesley
name: Schouten, Jeffrey
name: Luetkemeyer, Anne
name: Benson, Constance
name: Coombs, Robert
name: Swindells, Susan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Clinical site tuberculosis (TB) infection control checklist. (PDF 405 kb)
Additional file 1: of A socio-ecological perspective of access to and acceptability of HIV/AIDS treatment and care services: a qualitative case study research
Creators: name: Bereket Yakob
name: Busisiwe Ncama
Publisher: name: Figshare
Year: 2016
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Study Instruments. (DOCX 16 kb)
title: Concurrent OPC UA information model access, enabling real-time OPC UA PubSub
Creators: name: Denzler, Patrick
name: Ashjaei, Mohammad
name: Frühwirth, Thomas
name: Ebirim, Victor Nicholas
name: Kastner, Wolfgang
Publisher: name: TU Wien
Year: 2022
Subjects: OPC Unified Architecture
real-time Pub-Sub
TSN

description: Ongoing changes in industrial automation aim to-wards a flat and highly interconnected architecture that includes end-to-end real-time enabled machine-to-machine communications. Several technologies, such as OPC Unified Architecture (OPC UA) publish-subscribe and time-sensitive networking (TSN), facilitate that change. While OPC UA PubSub and TSN can already provide real-time capabilities, the parallel operation with standard OPC UA client-server remains an open challenge. This article presents preliminary results for solving concurrent information model access between OPC UA PubSub and client-server. The results include the overall RT-TSN-OPC UA concept, an analysis of common concurrent data access mechanisms for their suitability, and identifying critical code segments in the open62541 OPC UA stack. The paper concludes by outlining further research focusing on implementing and evaluating a wait-and obstruction-free mechanism into open62541.
Additional file 4: of Transcriptomic responses of a simplified soil microcosm to a plant pathogen and its biocontrol agent reveal a complex reaction to harsh habitat
Creators: name: Perazzolli, Michele
name: NoemĂ­ Herrero
name: Sterck, Lieven
name: Lenzi, Luisa
name: Pellegrini, Alberto
name: Puopolo, Gerardo
name: Peer, Yves Van De
name: Pertot, Ilaria
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology
subject: 60506 Virology

description: Distribution of read pair alignments to the genomes of the soil microorganisms. (A, B) Distribution of read pair alignments to the 13 soil microorganisms calculated with the Samtools software [30] and expressed as a percentage (%) of total alignments to the microcosm genome. (C, D) Distribution of unique read pairs mapping to genes of the 13 soil microorganisms, counted using HTSeq [32] and expressed as a percentage (%) of total unique read pairs mapping to genes in the microcosm genome. (E, F) Percentage (%) of expressed genes (more than one read pair) calculated as compared to the total predicted genes for each soil microorganism. Mean and standard error values of three replicates are reported for each condition: the simplified soil microcosm collected at the beginning of the experiment (SSM0) and 24Â h after incubation either without exogenous fungi (SSM), with the biocontrol agent Trichoderma atroviride (SSM+T), with the plant pathogen Armillaria mellea (SSM+A) or with both (SSM+T+A). (PDF 23 kb)
Paraplea halei
Creators: name: Cook, Jerry L.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Pleidae
Paraplea
Paraplea halei

description: Paraplea halei (Lundblad, 1933)
New South Wales: Junction Guyra-Tingha Road, Ollera Creek, 5 IX 1961, D. J. Woodland (1 specimen SEMC, 1 specimen SHU).
description: Published as part of Cook, Jerry L., 2021, Review of the Paraplea Esaki & China (Hemiptera: Heteroptera: Nepomorpha Pleidae) of Australia, with description of a new species, pp. 81-90 in Zootaxa 4985 (1) on page 82, DOI: 10.11646/zootaxa.4985.1.4, http://zenodo.org/record/4929927
Interfacial dynamics in complex fluids : studies of drop and free-surface deformation in polymer solutions
Creators: name: Zhou, Diwen
Publisher: name: University of British Columbia
Year: 2010

description: Interfacial flows in complex fluids are an important subject, scientifically rich and technologically important. The main scientific attraction comes from the fact that the microstructure of the bulk fluids may evolve during interfacial flow, and thereby generating non-Newtonian stresses that act on the interface. Thus, interfacial motion and conformation of the microstructure are coupled. Such flow situations arise in many industrial applications, including processing of polymer blends, foaming, and emulsification. In this thesis, I describe three projects aimed at exploring interfacial dynamics of viscoelastic polymeric liquids. The first project consists of finite-element simulations of drop deformation in converging flows in an axisymmetric conical geometry. The moving interface is captured using a diffuse-interface model and accurate interfacial resolution is ensured by adaptive refinement of the grid. The drop experiences a predominantly elongational flow. The amount of deformation sustained by the drop depends, besides the geometry and kinematics of the flow, on the rheology of both the drop and the matrix fluids. The second and third projects concern the same process of selective withdrawal, in which stratified layers of immiscible fluids are withdrawn from a tube placed a certain distance from the interface. We have chosen to work with an air-liquid system, with the suction tube embedded in the Newtonian or viscoelastic liquid. The second project is an experimental study, where we used video recording and imaging processing to analyze how the interfacial deformation is influenced by the non-Newtonian rheology of the liquid. We discover three regimes, subcritical, critical and supercritical. The third project consists of sharp-interface, moving-grid finite-element simulations of selective withdrawal for Newtonian and viscoelastic Giesekus liquids. The experiments and computations are in reasonable agreement. The work of this thesis has led to two main outcomes. The first is a detailed understanding of how viscoelastic stress can lead to unusual and sometimes counter-intuitive effects on interfacial deformation. The second is a potentially important new method for measuring elongational viscosity of low-viscosity liquids. This is worth further investigation considering the poor performance of existing methods.
Litus Haliday 1833
Creators: name: Huber, John T.
name: Read, Jennifer D.
name: Triapitsyn, Serguei V.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mymaridae
Litus

description: LITUS Haliday, 1833
(Figs 519–544)
Litus Haliday, 1833a: 269, 1833b: 345. Type species: Litus cynipseus Haliday, 1833, by monotypy.
Neolitus Ogloblin, 1935a: 60. Type species: Neolitus argentinus Ogloblin, 1935, by original designation. Synonymy by Triapitsyn & Berezovskiy, 2004a: 3.
Diagnosis. Body length 265–645 μm. Funicle 6-segmented (Figs 519, 524); mandibles crossing when closed, with 2 subequal teeth (Fig. 534); vertex with lateral ocellus at posterolateral angle, forming an obtuse ocellar triangle (Figs 523, 532); head posteriorly without evident sulci but occiput separated from gena/postgena by slight change in sculpture lateral to dorsal margin of foramen (Figs 521, 530); mesophragma projecting into gaster (Fig. 535 [gaster broken off]); propodeum posteriorly with a short but wide ring-like nucha (neck) separated from rest of propodeum by a distinct narrowing (Fig. 535); petiole apparently narrow (Fig. 541); metasoma smooth, laterally compressed, with gt 1 cynipid-like, much the largest tergum (Figs 528, 540–542).
Discussion. Litus apparently belongs to the Alaptus group of genera together with Alaptus, Callodicopus, Dicopomorpha and Dicopus but is also similar in petiole structure to the Camptoptera group of genera. It is perhaps most similar to Callodicopus in having a compressed gaster, higher than wide, but differs in the back of the head not having any distinct sulci, funicle 6-segmented, and gt 1 the largest tergum.
Nearctic hosts. Unknown. An extralimital host is for the type species, reared from Ocypus olens (Müller) (Coleoptera: Staphylinidae), which also occurs as an accidental introduction in California.
Important reference. Triapitsyn & Berezovskiy (2004a).
description: Published as part of Huber, John T., Read, Jennifer D. & Triapitsyn, Serguei V., 2020, Illustrated key to genera and catalogue of Mymaridae (Hymenoptera) in America north of Mexico, pp. 1-411 in Zootaxa 4773 (3) on page 207, DOI: 10.11646/zootaxa.4773.1.1, http://zenodo.org/record/3821373
Additional file 4: Figure S3. of The UT family of MHC class I loci unique to non-eutherian mammals has limited polymorphism and tissue specific patterns of expression in the opossum
Creators: name: Krasnec, Katina
name: Papenfuss, Anthony
name: Miller, Robert
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: Agarose gel containing RT-PCR products using ModoUT8 specific primers revealing presence of transcripts in thymus RNA but not spleen or liver. (PDF 657 kb)
Paraplea liturata
Creators: name: Cook, Jerry L.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Pleidae
Paraplea
Paraplea liturata

description: Paraplea liturata (Fieber, 1844)
Specimens of P. liturata from Australia were not available for examination as part of this study. However, this is a widespread species and specimens were available from adjacent Southeast Asia. The 292 specimens used for the most recent supplementary description of P. liturata (Cook et al. 2020) were used as comparative material for this study.
description: Published as part of Cook, Jerry L., 2021, Review of the Paraplea Esaki & China (Hemiptera: Heteroptera: Nepomorpha Pleidae) of Australia, with description of a new species, pp. 81-90 in Zootaxa 4985 (1) on page 82, DOI: 10.11646/zootaxa.4985.1.4, http://zenodo.org/record/4929927
Litus camptopterus Novicky 1953
Creators: name: Huber, John T.
name: Read, Jennifer D.
name: Triapitsyn, Serguei V.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mymaridae
Litus
Litus camptopterus

description: Litus camptopterus Novicky, 1953
Litus camptopterus Novicky, 1953: 14. Holotype ♀ (NHMW), lost. TL: Austria, Farauenhofen (near Horn). Triapitsyn & Berezovskiy, 2004a: 5 (key), 10 (description, distribution); Rehmat et al., 2009: 370 (distribution) [P]; Pintureau, 2012: 32 (list) [P]; Pricop, 2009b: 126 (list) [P]; Pricop, 2014b: 21 (key, distribution, description) [P]; Triapitsyn, 2018a: 145 (distribution) [O].
Litus distinctus Boţoc, 1964: 79. Holotype? ♀ (depository not specified), lost. TL: Romania, Malnas. Synonymy by Triapitsyn & Berezovskiy, 2004a: 10.
Distribution. Canada: ON, QC. USA: CA, GA.
description: Published as part of Huber, John T., Read, Jennifer D. & Triapitsyn, Serguei V., 2020, Illustrated key to genera and catalogue of Mymaridae (Hymenoptera) in America north of Mexico, pp. 1-411 in Zootaxa 4773 (3) on page 207, DOI: 10.11646/zootaxa.4773.1.1, http://zenodo.org/record/3821373
Design of bioreactor for reducing sulphate in cattle drinking water
Creators: name: Li, Winton
Publisher: name: University of British Columbia
Year: 2010

description: A 5 litre laboratory-scale upflow anaerobic sludge blanket (UASB) bioreactor was constructed and operated for approximately one year to reduce sulphate in water using an agricultural byproduct, silage, as carbon source. The purpose of this water treatment system was to test the suitability of the UASB design to treat simulated ground water with high sulphate concentrations destined to be used as cattle drinking water. The UASB reactor design was selected after performing an extensive literature review of all available sulphate-reduction processes. A previous MASc project (Amber Brown, 2007) demonstrated the suitability of silage as a carbon source for sulphate reducing bacteria and, furthermore, in this thesis, fate of the organic compounds in the silage leachate during sulphate-reduction was determined. Six particular tests were performed in order to quantify the type of organics in the feed and effluent: chemical oxygen demand (COD), total organic carbon (TOC), total carbohydrates, total alcohols, total phenols, and selected organic and volatile fatty acids (VFA). The reactor ran continuously for approximately one year with a constant silage leachate feed COD concentration of 10,000 mg L₋−¹, and sulphate feed concentrations varying from 2,000 to 3,200 mg L−¹. The flow rates for each feed stream were maintained at ~0.5 mL min−¹ for silage leachate and ~1 mL min−¹ for sulphate feed for most of the experiment. The sulphate reduction rates (SRR) ranged from 368 to 845 mg L−¹ d−¹ and the amount of organics consumed was between 80-90%. Sulphide levels in the UASB bioreactor were consistently high for most of the experiment, ranging from 600-800 mg L−¹. When the sulphate feed concentration was increased to a maximum of 3,282 (± 27.22) mg L−¹, the sulphide concentration within the bioreactor reached a maximum of 1,273 (± 473.5) mg L−¹. A sulphide stripping column was introduced midway through the experiment in an attempt to reduce the sulphide concentration in the system. Short-term results were promising, however, prolonged sulphide removal in the system could not be maintained due to operational problems. Interestingly, during the last month of operation, despite the high sulphide levels, the SRR was at its highest with an upward trend.
Litus cynipseus Haliday 1833
Creators: name: Huber, John T.
name: Read, Jennifer D.
name: Triapitsyn, Serguei V.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mymaridae
Litus
Litus cynipseus

description: Litus cynipseus Haliday, 1833
Litus cynipseus Haliday, 1833b: 365. Lectotype ♀ (NMID), designated by Graham, 1982: 225. TL: Likely England or Ireland, locality not specified. Curtis, 1837: 134 (list) [P]; Walker, 1846: 51 (description) [P]; Marshall, 1873: 23 (catalogue) [P]; Dalla Torre, 1898: 428 (catalogue) [P]; Lameere, 1907: 246 (habitat) [P]; Brocher, 1910: 182 (host, Switzerland) [P] [misidentification?]; Schultz, 1910a: 189 (description, Switzerland) [P] [misidentification?]; Girault, 1914 [187]: 88 (host- Limnobates sp.) [P] [misidentification]; Ogloblin, 1935a: 63 (comparison with other species) [NT]; Ogloblin, 1955: 498 (description) [NT]; Annecke & Doutt, 1961c: 10 (correction to Ogloblin description); Hellén, 1968: 34 (list) [P]; Viggiani, 1973a: 231 (male description) [P]; Hellén, 1974: 13 (description, distribution) [P]; Bouček & Graham, 1978: 109 (check- list) [P]; Viggiani & Jesu, 1988: 1022 (distribution) [P]; Fursov, 1995: 5 (host, biology) [P] [misidentification]; Pagliano & Navone, 1995: 35 (list) [P]; Huber, 1997: 503 (key); Baquero & Jordana, 2002: 81 (distribution) [P]; Triapitsyn & Berezovskiy, 2004a: 4 (key), 5 (description, distribution); Ulrich, 2004: 62 (habitat) [P]; Ulrich, 2005: 47, 198 (phenology, density) [P]; Santos et al., 2008: 142 (distribution) [P]; Huber et al., 2009: 271 (list) [P]; Pricop, 2009b: 125 (distribution) [P]; Pricop, 2009c: 19 (distribution) [P]; Aguiar et al., 2010: 246 (list) [P]; Pintureau, 2012: 32 (list) [P]; Pricop, 2014b: 21 (key, distribution, diagnosis) [P]; Rameshkumar et al., 2015a: 4 (distribution) [O]; Dale-Skey et al., 2016: 241 (checklist) [P]; Koponen & Triapitsyn, 2016: 2 (distribution) [P]; Triapitsyn, 2018a: 145 (distribution) [O].
Lytus [sic] cynipseus: Blanchard, 1840: 293 (description) [P].
Litus krygeri Kieffer, 1913: 378. Syntypes? ca. 70 ♀ (unknown, probably ZMUC), lost. TL: Denmark, Dyrehaven (near Copenhagen). Synonymy by Triapitsyn & Berezovskiy, 2004a: 5.
Distribution. Canada: BC, NS, ON. USA: CA, GA, MD, TX.
description: Published as part of Huber, John T., Read, Jennifer D. & Triapitsyn, Serguei V., 2020, Illustrated key to genera and catalogue of Mymaridae (Hymenoptera) in America north of Mexico, pp. 1-411 in Zootaxa 4773 (3) on page 207, DOI: 10.11646/zootaxa.4773.1.1, http://zenodo.org/record/3821373
Additional file 1: Table S1. of Chromosomal phylogeny of Vampyressine bats (Chiroptera, Phyllostomidae) with description of two new sex chromosome systems
Creators: name: Gomes, Anderson
name: Cleusa Nagamachi
name: Rodrigues, Luis
name: Thayse Benathar
name: Talita Ribas
name: O’Brien, Patricia
name: Fengtang Yang
name: Ferguson-Smith, Malcolm
name: Pieczarka, Julio
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Vampyressina, Basic Data Matrix using PHA chromosome numbering as reference (DOC 198 kb)
Additional file 1: Table S1. of The UT family of MHC class I loci unique to non-eutherian mammals has limited polymorphism and tissue specific patterns of expression in the opossum
Creators: name: Krasnec, Katina
name: Papenfuss, Anthony
name: Miller, Robert
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: The numbers of alleles varies between 2 and 23, but overall low levels of polymorphism were found. (PDF 62 kb)
MOESM5 of HOXA repression is mediated by nucleoporin Nup93 assisted by its interactors Nup188 and Nup205
Creators: name: Labade, Ajay
name: Krishanpal Karmodiya
name: Sengupta, Kundan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Marine Biology
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Additional file 5: Table S1. List of ChIP-qPCR primers. Table S2. List of RT-PCR primers. Table S3. Antibodies and their dilutions used in this study.
How the nature of inequality reduction matters for CO2 emissions
Creators: name: Angel, Tobias
name: Berthe, Alexandre
name: Costantini, Valeria
name: D’Angeli, Mariagrazia
Publisher: name: Unknown
Year: 2024
Subjects: subject: Climate Change
subject: Environmental Economics and Policy
subject: inequality
subject: redistribution
subject: emissions
subject: climate change
subject: social protection

description: This study investigates the relationship between distinct types of inequality and CO2 emissions using panel data on 156 countries from 1995 to 2020. Using fixed effects panel and quantile regression techniques, we report estimates that indicate that pre-distribution (inequality reduction by structural changes and social protection) is better aligned with the goal of carbon emission reduction than redistribution (inequality reduction by transfers). However, those countries who contribute the least to global warming face the highest environmental degrading effect of pre-distribution. In contrast, pre-distribution decreases or does not affect the carbon emissions of the biggest global polluters. Redistribution, on the other hand, exhibits the reverse pattern. Moreover, we differentiate in this analysis between production-based and consumption-based emissions, finding on average higher challenges regarding joint inequality and emission reduction in countries that produce carbon intensive commodities. These findings call for international cooperation, structural changes and social protection policies to achieve the Sustainable Development Goals of joint inequality and carbon emission reduction.
Additional file 3: of Transcriptomic responses of a simplified soil microcosm to a plant pathogen and its biocontrol agent reveal a complex reaction to harsh habitat
Creators: name: Perazzolli, Michele
name: NoemĂ­ Herrero
name: Sterck, Lieven
name: Lenzi, Luisa
name: Pellegrini, Alberto
name: Puopolo, Gerardo
name: Peer, Yves Van De
name: Pertot, Ilaria
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Plant Biology

description: RNA-Seq sequencing and mapping results for each replicate. (PDF 14 kb)
Lymaenon Walker 1846
Creators: name: Huber, John T.
name: Read, Jennifer D.
name: Triapitsyn, Serguei V.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mymaridae
Lymaenon

description: LYMAENON Walker, 1846
(Figs 545–560)
Lymaenon Walker, 1846: 49. Type species: Lymaenon acuminatus Walker, 1846, by subsequent designation by Gahan & Fagan, 1923: 82.
Rachistus Foerster, 1847: 203. Type species: Ooctonus litoralis Haliday, 1833, by subsequent designation by Gahan & Fagan, 1923: 128. De facto synonymy under Lymaenon by Huber, 2015: 41.
Rhachistus [sic]: Dalla Torre, 1898: 429. Unjustified emendation.
Oophilus Enock, 1909: 458. Type species: Oophilus longicauda Enock, 1909, by monotypy. De facto synonymy under Lymaenon by Huber, 2015a: 41.
Agonatocerus Girault, 1913 [149]: 276. Type species: Agonatocerus humboldti Girault, 1913, by original designation. De facto synonymy under Lymaenon by Huber, 2015a: 41.
Gonatocerus (Gonatoceroides) Girault, 1913 [155]: 255. Type species: Gonatocerus australicus Girault, 1913, by original designation. De facto synonymy under Lymaenon by Huber, 2015: 41.
Decarthrius Debauche, 1949: 21. Type species: Decarthrius straeleni Debauche, 1949, by original designation. De facto synonymy under Lymaenon by Huber, 2015a: 41.
Diagnosis. Body length 560–1770 μm. Ocellar triangle with 3 or, rarely, 4 setae between lateral ocelli (Fig. 547); pronotal lobes separated by a membranous gap (Fig. 551); mesothoracic spiracle much larger than propodeal spiracle (Fig. 552); dorsellum strap-like, with anterior and posterior margins parallel (Figs 551, 552); stigmal vein with apex truncate (Fig. 554); propodeum with parallel or slightly converging submedian lines, often with spicules between them (Fig. 551).
Discussion. Among the four genera in the Nearctic (Cosmocomoidea, Gastrogonatocerus, Gonatocerus, and Lymaenon) that share the following combination of features: tarsi 5-segmented, funicle 8-segmented, face with subantennal sulci, and parastigma with hypochaeta about midway between proximal and distal macrochaetae (Huber 2015a), Lymaenon is superficially most similar to Gonatocerus because of its relatively narrow fore wing usually uniformly covered with microtrichia from base of parastigma to wing apex but sometimes with a clear area between parastigma + stigma and cubital line of microtrichia (Fig. 554); otherwise it differs especially in mesosomal structure.
Nearctic hosts. Hemiptera: Cicadellidae, Membracidae.
Important references. Triapitsyn (2013a), Triapitsyn (2013b), and Triapitsyn et al. (2010) treated Palaearctic, Nearctic and Neotropical species, respectively.
description: Published as part of Huber, John T., Read, Jennifer D. & Triapitsyn, Serguei V., 2020, Illustrated key to genera and catalogue of Mymaridae (Hymenoptera) in America north of Mexico, pp. 1-411 in Zootaxa 4773 (3) on page 216, DOI: 10.11646/zootaxa.4773.1.1, http://zenodo.org/record/3821373
Additional file 11: of Transcriptomic responses of a simplified soil microcosm to a plant pathogen and its biocontrol agent reveal a complex reaction to harsh habitat
Creators: name: Perazzolli, Michele
name: NoemĂ­ Herrero
name: Sterck, Lieven
name: Lenzi, Luisa
name: Pellegrini, Alberto
name: Puopolo, Gerardo
name: Peer, Yves Van De
name: Pertot, Ilaria
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Ecology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Plant Biology

description: Biological networks of Gene Ontology (GO) terms. GO biological process terms of the simplified soil microcosm, upregulated by incubation in the soil matrix with similar expression profiles in the presence or absence of Armillaria mellea and Trichoderma atroviride (cluster 1). Significantly enriched GO terms (Pâ
Additional file 4: Figure S2. of deconstructSigs: delineating mutational processes in single tumors distinguishes DNA repair deficiencies and patterns of carcinoma evolution
Creators: name: Rosenthal, Rachel
name: McGranahan, Nicholas
name: Herrero, Javier
name: Taylor, Barry
name: Swanton, Charles
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: 60506 Virology
subject: Computational Biology

description: Comparison of the SSE between deconstructSigs and WTSI Mutational Signatures Framework. a SSEs between the input tumor mutational profile and reconstructed mutational profile were calculated for each TCGA tumor analyzed. The calculated SSEs from using the WTSI Mutational Signatures Framework were compared with those from using deconstructSigs. Each point represents the SSE as calculated through use of the signature weights assigned by the WTSI Mutational Signatures Framework and the SSE as calculated through the use of the signature weights assigned by deconstructSigs. The SSE is consistent between the two approaches. b Relationship between SSE and overall mutation count. As the mutation count of the tumor sample increases, the calculated SSE decreases. (PDF 632 kb)
Additional file 5: Figure S3. of deconstructSigs: delineating mutational processes in single tumors distinguishes DNA repair deficiencies and patterns of carcinoma evolution
Creators: name: Rosenthal, Rachel
name: McGranahan, Nicholas
name: Herrero, Javier
name: Taylor, Barry
name: Swanton, Charles
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Developmental Biology
subject: Cancer
subject: 60506 Virology
subject: Computational Biology

description: Comparison of signature contributions between deconstructSigs and WTSI Mutational Signature Framework using reference signatures. Cancer types with unambiguous signatures extracted using WTSI Mutational Signatures Framework [8] were re-analyzed with deconstructSigs and allowed to use any of the originally published signatures [4]. For the signatures that were extracted using WTSI Mutational Signature Framework, a comparison between the weights assigned by deconstructSigs and those originally calculated by WTSI Mutational Signatures Framework is plotted. A table of the values of all weights assigned by deconstructSigs can be found in Table S2 (Additional file 6). (PDF 321 kb)
Additional file 1: Figure S1. of deconstructSigs: delineating mutational processes in single tumors distinguishes DNA repair deficiencies and patterns of carcinoma evolution
Creators: name: Rosenthal, Rachel
name: McGranahan, Nicholas
name: Herrero, Javier
name: Taylor, Barry
name: Swanton, Charles
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Computational Biology

description: Weights assigned to false positives and false negatives in a randomly generated tumor cohort. A random cohort of 500 tumors containing 2646 total signatures was generated with known signature contributions of the published signatures. This cohort was subjected to up to a ±5 % random perturbation to more accurately reflect a ‘non-perfect’ theoretical tumor sample. Running deconstructSigs on these simulated tumor samples resulted in some outputs containing false positives, where a signature was erroneously identified as contributing to the sample (a). The weights assigned to these false positive results were seen almost uniformly have been under 6 % for each signature (marked at the red line). b False negatives, where a signature was erroneously rejected as contributing to the sample, occurred 38 times from the analysis of the randomly simulated tumors for a false negative rate of 1.4 %. The weights of all of the false negatives were under 6 %, indicating that the use to this cutoff does not increase the tendency of deconstructSigs to call false negatives. (PDF 111 kb)
Effect of operating parameters and particle properties on electrostatics in gas-solid fluidized beds
Creators: name: Moughrabiah, Wajeeh O.
Publisher: name: University of British Columbia
Year: 2009

description: The influences of operating pressure, temperature and gas velocity on electrostatics in a fluidized bed of glass beads and different grades of polyethylene resin were investigated in a fluidization column of 150 mm inner diameter and 2.0 m height. Eight collision probes at different levels and radial positions measured the electrostatics in the bed. The electrostatics increased as pressure increased, probably due to an increase in bubble rise velocity, frequency and volume fraction. As the pressure increased, particle-particle and particle-wall collisions near the distributor and wall contributed heavily to charge generation. Temperature also played a role. At higher temperatures (up to 90°C), the polarity of net cumulative charge in the bed reversed. As the superficial gas velocity increased, the electrostatics increased. However, at higher gas velocities, the polarity in the freeboard was opposite to that in the bed, indicating that fines entrained from the column carried charges, resulting in a net charge of opposite polarity to that inside the bed. For Geldart group B particles the degree of electrification in the bed slightly increased with decreasing particle size. Charging for group A particles was significantly greater than for group B particles. For binary mixtures of group A and B particles the electrostatics increased as the proportion of small particles increased. As the relative humidity (RH) of fluidizing air increased, the electrostatics decreased. For the RH range (5-30%) explored, the sensitivity of the charging to RH varied significantly depending on the location of the probes. As the proportion of fine glass beads (<30 µm) increased to 2.0 wt% in a fluidized bed of large glass beads (574 µm), the electrostatics in the bed decreased, likely because the fines acted as spacers between larger particles. The electrostatics decreased as the proportion of an antistatic agent (Larostat) increased from 0.0 to 0.5 wt%, because Larostat tends to adsorb moisture and attach to the surface of the glass beads, consequently enhancing their surface conductivity. However, the degree of electrification increased when the wt% of Larostat exceeded 1.0%, likely due to the tendency of Larostat particles to adsorb water and to agglomerate.
Separation of carbon dioxide from fuel gas ("pre-combustion capture") via hydrate crystallization
Creators: name: Kumar, Rajnish
Publisher: name: University of British Columbia
Year: 2009

description: Conventional coal-fired power plants that rely on the combustion of the coal are the largest anthropogenic point sources of atmospheric carbon dioxide (CO₂). An alternative approach of producing electricity with CO₂ capture is pre-combustion decarbonisation whereby the coal is used to produce an intermediate hydrogen-rich gas (CO₂/H₂ mixture). This route is known as integrated gasification combined cycle (IGCC). The CO₂/H₂ mixture is called fuel gas and is separated into a CO₂-rich and a H₂-rich stream. The H₂ may be burnt to produce electricity or used in fuel cells. The assumption is that the CO₂ can possibly be stored safely in a suitable geological formation. It is noted that other fossil fuels may be used in a similar manner as coal. This thesis examines the prospect of employing a novel method for the separation of carbon dioxide (CO₂) from CO₂/H₂ mixture (fuel gas mixture) via clathrate hydrate crystal formation. Experiments and theory are employed at the engineering (macroscopic) and molecular level to achieve the objectives. The focus is on the study of the thermodynamic and kinetic properties of CO₂/H₂ and CO₂/H₂/C₃H₈ hydrates. The basis for separation of the CO₂ is the fact that when a CO₂/H₂ or CO₂/H₂/C₃H₈ mixture is allowed to form hydrate, CO₂ preferentially gets incorporated into the hydrate phase. The addition of 2.5 mol % C₃H₈ in the fuel gas mixture was found to reduce the hydrate formation pressure and thus improve the process economics. Based on the data obtained a conceptual separation process was developed. It involves two hydrate stages coupled with a membrane-based gas separation stage. The two hydrate stages operate at ~3.5 MPa and 273.7 K. The power penalty for a 500 MW power plant is estimated to be about 2.5% of the power output. Crystal structures and cage occupancies for the CO₂/H₂ and the CO₂/H₂/C₃H₈ hydrate were determined using several spectroscopic techniques. This enabled an understanding of the separation efficiency values obtained for the process.
Partially identified heteroskedastic SVARs
Creators: name: Bacchiocchi, Emanuele
name: Bastianin, Andrea
name: Kitagawa, Toru
name: Mirto, Elisabetta
Publisher: name: Unknown
Year: 2024
Subjects: subject: Public Economics
subject: Resource /Energy Economics and Policy
subject: Heteroskedastic SVAR
subject: point and set identification
subject: robust Bayesian approach

description: This paper presents new results on the identification of heteroskedastic structural vector autoregressive (HSVAR) models. Point identification of HSVAR models fails when some shifts in the variances of the structural shocks are suspected to be statistically indistinguishable from each other. This paper presents a new strategy that allows researchers to continue using HSVAR models in this empirically relevant case. We show that a combination of heteroskedasticity and zero restrictions can recover point identification in HSVAR models even in the absence of heterogeneous variance shifts. We derive the identified sets for impulse responses and show how to compute them. We perform inference on the impulse response functions, building on the robust Bayesian approach developed for set-identified SVARs. To illustrate our proposal, we present an empirical example based on the literature on the global crude oil market, where standard identification is expected to fail under heteroskedasticity.