cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Gaia DR2 study of Herbig Ae/Be stars
Creators: name: Vioque, M.
name: Oudmaijer, R. D.
name: Baines, D.
name: Mendigutía, I.
name: Pérez-Martínez, R.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We use Gaia Data Release 2 (DR2) to place 252 Herbig Ae/Be stars in the HR diagram and investigate their characteristics and properties. For all known Herbig Ae/Be stars with parallaxes in Gaia DR2, we collected their atmospheric parameters and photometric and extinction values from the literature. To these data we added near- and mid-infrared photometry, collected H$α$ equivalent widths and line profiles, and their binarity status. In addition, we developed a photometric variability indicator from Gaia's DR2 information. We provide masses, ages, luminosities, distances, variabilities and infrared excesses homogeneously derived for the most complete sample of Herbig Ae/Be stars to date. We find that high mass stars have a much smaller infrared excess and have much lower optical variabilities compared to lower mass stars, with the break at around 7M$_{\odot}$. H$α$ emission is generally correlated with infrared excess, with the correlation being stronger for infrared emission at wavelengths tracing the hot dust closest to the star. The variability indicator as developed by us shows that $\sim$25% of all Herbig Ae/Be stars are strongly variable. We observe that the strongly variable objects display doubly peaked H$α$ line profiles, indicating an edge-on disk. The fraction of strongly variable Herbig Ae stars is close to that found for A-type UX Ori stars. It had been suggested that this variability is in most cases due to asymmetric dusty disk structures seen edge-on. The observation here is in strong support of this hypothesis. Finally, the difference in dust properties occurs at 7M$_{\odot}$, while various properties traced at UV/optical wavelengths differ at 3M$_{\odot}$. The latter has been linked to different accretion mechanisms at work whereas the differing infrared properties and variabilities are related to different (dust-)disk dispersal mechanisms.
description: 15 pages, 8 figures. Accepted for publication in Astronomy & Astrophysics
Senna occidentalis Link 2001
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Senna
Senna occidentalis

description: Cassia falcata Linnaeus, Species Plantarum 1: 377. 1753.
"Habitat in America." RCN: 2965.
 Neotype (Reveal in Turland & Jarvis in Taxon 46: 466. 1997): Browne, Herb. Linn. No. 528.13 (LINN).
 Current name:  Senna occidentalis  (L.) Link (Fabaceae: Caesalpinioideae).
 Note: A specimen in Herb. Linn. (No. 528.12, LINN), identifiable as C. fistula L., although annotated “falcata” by Linnaeus, lacks glands at the bases of the petioles and is thereby fundamentally at odds with Linnaeus’ nomen specificum legitimum which states "glandula baseos petiolorum". This specimen could not possibly have been that upon which the validating diagnosis was based and is therefore not original material for C. falcata. In the absence of any other original material, Reveal designated a neotype.
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part C), pp. 370-473 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 392, DOI: 10.5281/zenodo.291971
The Co-evolution of Disk and Star in Embedded Stages: The Case of the Very Low-mass Protostar
Creators: name: Okoda, Yuki
name: Oya, Yoko
name: Sakai, Nami
name: Watanabe, Yoshimasa
name: Jørgensen, Jes K.
name: van Dishoeck, Ewine F.
name: Yamamoto, Satoshi
Publisher: name: arXiv
Year: 2018
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We have observed the CCH (N=3-2, J=7/2-5/2, F=4-3 and 3-2) and SO (6_7-5_6) emission at a 0"2 angular resolution toward the low-mass Class 0 protostellar source IRAS 15398-3359 with ALMA. The CCH emission traces the infalling-rotating envelope near the protostar with the outflow cavity extended along the northeast-southwest axis. On the other hand, the SO emission has a compact distribution around the protostar. The CCH emission is relatively weak at the continuum peak position, while the SO emission has a sharp peak there. Although the maximum velocity shift of the CCH emission is about 1 km s^-1 from the systemic velocity, a velocity shift higher than 2 km s^{-1} is seen for the SO emission. This high velocity component is most likely associated with the Keplerian rotation around the protostar. The protostellar mass is estimated to be 0.007^{+0.004}_{-0.003} from the velocity profile of the SO emission. With this protostellar mass, the velocity structure of the CCH emission can be explained by the model of the infalling-rotating envelope, where the radius of the centrifugal barrier is estimated to be 40 au from the comparison with the model. The disk mass evaluated from the dust continuum emission by assuming the dust temperature of 20 K-100 K is 0.1-0.9 times the stellar mass, resulting in the Toomre Q parameter of 0.4-5. Hence, the disk structure may be partly unstable. All these results suggest that a rotationally-supported disk can be formed in the earliest stages of the protostellar evolution.
Cassia fistula Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Cassia
Cassia fistula

description: Cassia fistula Linnaeus, Species Plantarum 1: 377. 1753, typ. cons.
"Habitat in India, Aegypto." RCN: 2968.
 Lectotype (Fawcett & Rendle, Fl. Jamaica 4: 102. 1920; Larsen & Larsen in Aubréville & Leroy, Fl. Cambodge Laos Viêt-Nam 18: 79. 1980): Herb. Hermann 2: 29, No. 149 (BM-000594592).
 Generitype of Cassia Linnaeus, nom. cons.
 Current name:  Cassia fistula  L. (Fabaceae: Caesalpinioideae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part C), pp. 370-473 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 392, DOI: 10.5281/zenodo.291971
Non-local imprints of gravity on quantum theory
Creators: name: Maziashvili, Michael
name: Silagadze, Zurab K.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Quantum Physics (quant-ph)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: During the last two decades or so much effort has been devoted to the discussion of quantum mechanics (QM) that in some way incorporates the notion of a minimum length. This upsurge of research has been prompted by the modified uncertainty relation brought about in the framework of string theory. In general, the implementation of minimum length in QM can be done either by modification of position and momentum operators or by restriction of their domains. In the former case we have the so called soccer-ball problem when the naive classical limit appears to be drastically different from the usual one. Starting with the latter possibility, an alternative approach was suggested in the form of a band-limited QM. However, applying momentum cutoff to the wave-function, one faces the problem of incompatibility with the Schrödinger equation. One can overcome this problem in a natural fashion by appropriately modifying Schrödinger equation. But incompatibility takes place for boundary conditions as well. Such wave-function cannot have any more a finite support in the coordinate space as it simply follows from the Paley-Wiener theorem. Treating, for instance, the simplest quantum-mechanical problem of a particle in an infinite potential well, one can no longer impose box boundary conditions. In such cases, further modification of the theory is in order. We propose a non-local modification of QM, which has close ties to the band-limited QM, but does not require a hard momentum cutoff. In the framework of this model, one can easily work out the corrections to various processes and discuss further the semi-classical limit of the theory.
description: 29 pages
Additional file 5: of PePIF1, a P-lineage of PIF-like transposable element identified in protocorm-like bodies of Phalaenopsis orchids
Creators: name: Hsu, Chia-Chi
name: Pei-Han Lai
name: Tien-Chih Chen
name: Wen-Chieh Tsai
name: Jui-Lin Hsu
name: Hsiao, Yu-Yun
name: Wen-Luan Wu
name: Ching-Hsiu Tsai
name: Wen-Huei Chen
name: Hong-Hwa Chen
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Figure S3. Transposon display profile of PePIF1 in normal and crystal-like PLBs of KHM487 (a) and various PLB generations of KHM2180 (b). (DOCX 301 kb)
Applying transfer learning to sentiment analysis in social media - Supporting material
Creators: name: de Arriba Serra, Ariadna
name: Oriol, Marc
name: Franch, Xavier
Publisher: name: Zenodo
Year: 2021

description: This repository provides the additional resources of the paper "Applying transfer learning to sentiment analysis in social media" submitted to the 5th International Workshop on Crowd-Based Requirements Engineering (CrowdRE'21), 2021.
Thermodynamic Bethe Ansatz for the subleading magnetic perturbation of the tricritical Ising model
Creators: name: Ellem, R. M.
name: Bazhanov, V. V.
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We give further support to Smirnov's conjecture on the exact kink S-matrix for the massive Quantum Field Theory describing the integrable perturbation of the c=0.7 minimal Conformal Field theory (known to describe the tri-critical Ising model) by the operator $ϕ_{2,1}$. This operator has conformal dimensions $(7/16,7/16)$ and is identified with the subleading magnetic operator of the tri-critical Ising model. In this paper we apply the Thermodynamic Bethe Ansatz (TBA) approach to the kink scattering theory by explicitly utilising its relationship with the solvable lattice hard hexagon model. Analytically examining the ultraviolet scaling limit we recover the expected central charge c=0.7 of the tri-critical Ising model. We also compare numerical values for the ground state energy of the finite size system obtained from the TBA equations with the results obtained by the Truncated Conformal Space Approach and Conformal Perturbation Theory.
description: 22 pages, minor changes, references added. LaTeX file and postscript figure
Additional file 1 of Ocular biomarkers of cognitive decline based on deep-learning retinal vessel segmentation
Creators: name: Li, Rui
name: Hui, Ying
name: Zhang, Xiaoyue
name: Zhang, Shun
name: Lv, Bin
name: Ni, Yuan
name: Li, Xiaoshuai
name: Liang, Xiaoliang
name: Yang, Ling
name: Lv, Han
name: Yin, Zhiyu
name: Li, Hongyang
name: Yang, Yingping
name: Liu, Guangfeng
name: Li, Jing
name: Xie, Guotong
name: Wu, Shouling
name: Wang, Zhenchang
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified

description: Additional file 1.
[Hans Georg Nägeli]
Creators: name: Guyer, Heinrich
Publisher: name: [s.n.]
Year: 2024
Subjects: Nägeli, Hans Georg1773-1836Johann G.Nägeli

description: Reproduktionsfotografie einer Zeichnung von Heinrich Guyer (1810-1875). Sie stellt den Komponisten, Musikverleger und Musikpädagogen Hans Georg Nägeli (1773-1836) dar
description: Datierung aufgrund der Wirkungsdaten von Heinrich Guyer
description: Vermerk unterhalb des Abzuges auf dem Unterlageblatt: "Im Nägeli-Stübli im / Pfauhaus Wetzikon" Exemplar der Zentralbibliothek Zürich, Graphische Sammlung und Fotoarchiv
A Deep Learning Approach to Galaxy Cluster X-ray Masses
Creators: name: Ntampaka, M.
name: ZuHone, J.
name: Eisenstein, D.
name: Nagai, D.
name: Vikhlinin, A.
name: Hernquist, L.
name: Marinacci, F.
name: Nelson, D.
name: Pakmor, R.
name: Pillepich, A.
name: Torrey, P.
name: Vogelsberger, M.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We present a machine-learning approach for estimating galaxy cluster masses from Chandra mock images. We utilize a Convolutional Neural Network (CNN), a deep machine learning tool commonly used in image recognition tasks. The CNN is trained and tested on our sample of 7,896 Chandra X-ray mock observations, which are based on 329 massive clusters from the IllustrisTNG simulation. Our CNN learns from a low resolution spatial distribution of photon counts and does not use spectral information. Despite our simplifying assumption to neglect spectral information, the resulting mass values estimated by the CNN exhibit small bias in comparison to the true masses of the simulated clusters (-0.02 dex) and reproduce the cluster masses with low intrinsic scatter, 8% in our best fold and 12% averaging over all. In contrast, a more standard core-excised luminosity method achieves 15-18% scatter. We interpret the results with an approach inspired by Google DeepDream and find that the CNN ignores the central regions of clusters, which are known to have high scatter with mass.
description: 10 pages, 6 figures, accepted for publication in The Astrophysical Journal
Chamaecrista flexuosa Greene 1982
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Chamaecrista
Chamaecrista flexuosa

description: Cassia flexuosa Linnaeus, Species Plantarum 1: 379. 1753.
"Habitat in Brasilia." RCN: 2985.
 Lectotype (Greene in Pittonia 4: 27. 1899): [icon] " Chamaecrista Pavonis Brasiliana, siliqua singulari" in Breyn, Exot. Pl. Cent.: 64, t. 23. 1678.
 Current name:  Chamaecrista flexuosa  (L.) Greene (Fabaceae: Caesalpinioideae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part C), pp. 370-473 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 392, DOI: 10.5281/zenodo.291971
Water diffusion in rough carbon nanotubes
Creators: name: Mendonça, Bruno H. S.
name: Ternes, Patricia
name: Salcedo, Evy
name: de Oliveira, Alan B.
name: Barbosa, Marcia C.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We use molecular dynamics simulations to study the diffusion of water inside deformed carbon nanotubes with different degrees of deformation at 300 K. We found that the number of hydrogen bonds that water forms depends on nanotube topology, leading to enhancement or suppression of water diffusion. The simulation results reveal that more realistic nanotubes should be considered to understand the confined water diffusion behavior, at least for the narrowest nanotubes, when the interaction between water molecules and carbon atoms is relevant.
description: 17 pages, 8 figures
LC3B conjugation machinery promotes autophagy-independent HIV-1 entry in CD4+ T lymphocytes
Creators: name: Pradel, Baptiste
name: Cantaloube, Guilhem
name: Villares, Marie
name: Deffieu, Maïka S.
name: Robert-Hebmann, Véronique
name: Lucansky, Vincent
name: Faure, Mathias
name: Chazal, Nathalie
name: Gaudin, Raphaël
name: Espert, Lucile
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Environmental Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Statistics
subject: FOS: Mathematics
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: HIV-1 entry into CD4+ T lymphocytes relies on the viral and cellular membranes’ fusion, leading to viral capsid delivery in the target cell cytoplasm. Atg8/LC3B conjugation to lipids, process named Atg8ylation mainly studied in the context of macroautophagy/autophagy, occurs transiently in the early stages of HIV-1 replication in CD4+ T lymphocytes. Despite numerous studies investigating the HIV-1-autophagy interplays, the Atg8ylation impact in these early stages of infection remains unknown. Here we found that HIV-1 exposure leads to the rapid LC3B enrichment toward the target cell plasma membrane, in close proximity with the incoming viral particles. Furthermore, we demonstrated that Atg8ylation is a key event facilitating HIV-1 entry in target CD4+ T cells. Interestingly, this effect is independent of canonical autophagy as ATG13 silencing does not prevent HIV-1 entry. Together, our results provide an unconventional role of LC3B conjugation subverted by HIV-1 to achieve a critical step of its replication cycle. Abbreviations: BafA1: bafilomycin A1; BlaM: beta-lactamase; CD4+ TL: CD4+ T lymphocytes; PtdIns3K-BECN1 complex: BECN1-containing class III phosphatidylinositol 3-kinase complex; Env: HIV-1 envelope glycoproteins; HIV-1: type 1 human immunodeficiency virus; PM: plasma membrane; PtdIns3P: phosphatidylinositol-3-phosphate; VLP: virus-like
particle.
Comment on ``A Comparison Between Broad Histogram and Multicanonical Methods''
Creators: name: Kastner, M.
name: Promberger, M.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: A recent paper by A. R. Lima, P. M. C. de Oliveira, and T. J. P. Penna [cond-mat/0002176; J. Stat. Phys. 99:691 (2000)], seems to contain at least two mistakes which deserve comment, one concerning the numerical data, the other being of a conceptual kind.
description: submitted to J. Stat. Phys
Estimating the drivers of urban economic complexity and their connection to economic performance
Creators: name: Gomez-Lievano, Andres
name: Patterson-Lomba, Oscar
Publisher: name: arXiv
Year: 2018
Subjects: subject: Physics and Society (physics.soc-ph)
subject: Adaptation and Self-Organizing Systems (nlin.AO)
subject: General Finance (q-fin.GN)
subject: FOS: Physical sciences
subject: FOS: Economics and business

description: Estimating the capabilities, or inputs of production, that drive and constrain the economic development of urban areas has remained a challenging goal. We posit that capabilities are instantiated in the complexity and sophistication of urban activities, the knowhow of individual workers, and the city-wide collective knowhow. We derive a model that indicates how the value of these three quantities can be inferred from the probability that an individual in a city is employed in a given urban activity. We illustrate how to estimate empirically these variables using data on employment across industries and metropolitan statistical areas in the US. We then show how the functional form of the probability function derived from our theory is statistically superior when compared to competing alternative models, and that it explains well-known results in the urban scaling and economic complexity literature. Finally, we show how the quantities are associated with metrics of economic performance, suggesting our theory can provide testable implications for why some cities are more prosperous than others.
description: 42 pages, 15 figures, 6 tables, 13 appendices
Performance evaluation through DEA benchmarking adjusted to goals
Creators: name: Ruiz, José L.
name: Sirvent, Inmaculada
Publisher: name: arXiv
Year: 2018
Subjects: subject: Optimization and Control (math.OC)
subject: FOS: Mathematics

description: Data Envelopment Analysis (DEA) is extended to the evaluation of performance of organizations within the framework of the implementation of plans for improvements that set management goals. Managers usually set goals without having any evidence that they will be achievable at the moment of conducting performance evaluation or, on the contrary, they may set little too unambitious goals. Using DEA for the benchmarking ensures an evaluation in terms of targets that both are attainable and represent best practices. In addition, the approach we propose adjusts the DEA benchmarking to the goals in order to consider the policy of improvements that was pursued with the setting of such goals. From the methodological point of view, the models that minimize the distance to the DEA strong efficient frontier are extended to incorporate goal information. Specifically, the models developed seek DEA targets that are as close as possible to both actual performances and management goals. To illustrate, we examine an example that is concerned with the evaluation of performance of public Spanish universities.
The matrix protein of lyssavirus hijacks autophagosome for efficient egress by recruiting NEDD4 through its PPxY motif
Creators: name: Yuan, Yueming
name: Fang, An
name: Wang, Zhihui
name: Chen, Huanchun
name: Fu, Zhen F.
name: Zhou, Ming
name: Zhao, Ling
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Lyssaviruses are well-known worldwide and often cause fatal encephalitis. Previous studies have shown that autophagy is beneficial for the replication of rabies virus (RABV), the representative lyssavirus, but the detailed mechanism remains obscure. In this study, we showed that the rabies virus matrix protein (RABV-M) used its PPxY motif to interact with the E3 ubiquitin-protein ligase NEDD4. NEDD4 then recruited MAP1LC3/LC3 via its LC3-interacting region (LIR). Interestingly, after binding to the ubiquitinated RABV-M, NEDD4 could bind more LC3 and enhance autophagosome accumulation, while NEDD4 knockdown significantly reduced M-induced autophagosome accumulation. Further study revealed that RABV-M prevented autophagosome-lysosome fusion and facilitated viral budding. Inhibition of RABV-M-induced autophagosome accumulation reduced the production of extracellular virus-like particles. We also found that M proteins of most lyssaviruses share the same mechanism to accumulate autophagosome by hijacking NEDD4. Collectively, this study revealed a novel strategy for lyssaviruses to achieve efficient viral replication by exploiting the host autophagy system.Abbreviations: ABLV: Australian bat lyssavirus; ATG5: autophagy related 5; Baf A1:bafilomycin A1;co-IP: co-immunoprecipitation; CQ: chloroquine; DAPI:4’,6-diamidino-2’-phenylindole; DMSO: dimethyl sulfoxide; EBLV:European bat lyssavirus; GFP: green fluorescent protein; GST:glutathione S-transferase; hpi: hours post-infection; hpt: hourspost-transfection; LIR: LC3-interactingregion;MAP1LC3/LC3: microtubule-associated protein 1 light chain 3; mCherry:red fluorescent protein; MOI: multiplicity of infection; NC: negativecontrol; MVB: multivesicular body; NEDD4: neural precursorcell-expressed developmentally down-regulated 4; RABV: rabies virus;SQSTM1/p62: sequestosome 1; VLP: virus-like particle; VPS4B: vacuolarprotein sorting 4B; TEM: transmission electron microscopy; WB:western blotting; WT: wild-type; μm: micrometer; μM: micromole.
Additional file 1 of Glycemic control and cardiovascular outcomes in patients with diabetes and coronary artery disease according to triglyceride-glucose index: a large-scale cohort study
Creators: name: Lin, Zhangyu
name: He, Jining
name: Yuan, Sheng
name: Song, Chenxi
name: Bian, Xiaohui
name: Yang, Min
name: Dou, Kefei
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Mathematical Sciences not elsewhere classified

description: Supplementary Material 1: Table S1. Correlation analysis between TyG index and clinical risk factors. Table S2. Baseline characteristics according to CV events. Table S3. TyG tertiles in relation to secondary endpoints. Table S4. Glycemic control status in relation to study endpoints according to TyG index tertiles. Figure S1. Restrict cubic spine analysis for the association of TyG index with the risk of (A) CV events and (B) MACEs
Senna occidentalis Link 2001
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Senna
Senna occidentalis

description: Cassia galegifolia Linnaeus, Systema Naturae, ed. 10, 2: 1017. 1759, nom. rej.
RCN: 2972b.
 Lectotype (Irwin & Barneby in Mem. New York Bot. Gard. 35: 56. 1982): [icon] " Cassia foliolis quinque jugatis" in Plumier in Burman, Pl. Amer.: 69, t. 78, f. 1. 1756.
 Current name:  Senna occidentalis  (L.) Link (Fabaceae: Caesalpinioideae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part C), pp. 370-473 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 392, DOI: 10.5281/zenodo.291971
Discreteness Of Hyperbolic Isometries by Test Maps
Creators: name: Gongopadhyay, Krishnendu
name: Mukherjee, Abhishek
name: Tiwari, Devendra
Publisher: name: arXiv
Year: 2018
Subjects: subject: Geometric Topology (math.GT)
subject: FOS: Mathematics

description: Let $\mathbb F=\mathbb R$, $\mathbb C$ or $\mathbb H$. Let ${\bf H}_{\mathbb F}^n$ denote the $n$-dimensional $\mathbb F$-hyperbolic space. Let ${\rm U}(n,1; \mathbb F)$ be the linear group that acts by the isometries. A subgroup $G$ of ${\rm U}(n,1; \mathbb F)$ is called \emph{Zariski dense} if it does not fix a point on the closure of the $\mathbb F$-hyperbolic space, and neither it preserves a totally geodesic subspace of it. We prove that a Zariski dense subgroup $G$ of ${\rm U}(n,1; \mathbb F)$ is discrete if for every loxodromic element $g \in G$, the two generator subgroup $\langle f, g \rangle$ is discrete, where $f \in {\rm U}(n,1; \mathbb F)$ is a test map not necessarily from $G$.
description: Corrected a typo in the Introduction
ATF6 supports lysosomal function in tumor cells to enable ER stress-activated macroautophagy and CMA: impact on mutant TP53 expression
Creators: name: Benedetti, Rossella
name: Romeo, Maria Anele
name: Arena, Andrea
name: Montani, Maria Saveria Gilardini
name: D’Orazi, Gabriella
name: Cirone, Mara
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: The inhibition of the unfolded protein response (UPR), which usually protects cancer cells from stress, may be exploited to potentiate the cytotoxic effect of drugs inducing ER stress. However, in this study, we found that ER stress and UPR activation by thapsigargin or tunicamycin promoted the lysosomal degradation of mutant (MUT) TP53 and that the inhibition of the UPR sensor ATF6, but not of ERN1/IRE1 or EIF2AK3/PERK, counteracted such an effect. ATF6 activation was indeed required to sustain the function of lysosomes, enabling the execution of chaperone-mediated autophagy (CMA) as well as of macroautophagy, processes involved in the degradation of MUT TP53 in stressed cancer cells. At the molecular level, by pharmacological and genetic approaches, we demonstrated that the inhibition of ATF6 correlated with the activation of MTOR and with TFEB and LAMP1 downregulation in thapsigargin-treated MUT TP53 carrying cells. We hypothesize that the rescue of MUT TP53 expression by ATF6 inhibition, could further activate MTOR and maintain lysosomal dysfunction, further inhibiting MUT TP53 degradation, in a vicious circle. The findings of this study suggest that the presence of MUT TP53, which often exerts oncogenic properties, should be considered before approaching treatments combining ER stressors with ATF6 inhibitors against cancer cells, while it could represent a promising strategy against cancer cells that harbor WT TP53.
MOESM14 of A novel signature derived from immunoregulatory and hypoxia genes predicts prognosis in liver and five other cancers
Creators: name: Chang, Wai
name: Donall Forde
name: Lai, Alvina
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer

description: Additional file 14. Univariate and multivariate Cox proportional hazards analysis of risk factors associated with overall survival in five non-HCC cancers. Significant covariates are highlighted in bold.
Chamaecrista glandulosa Greene 1982
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Chamaecrista
Chamaecrista glandulosa

description: Cassia glandulosa Linnaeus, Systema Naturae, ed. 10, 2: 1017. 1759.
["Habitat in Jamaica."] Sp. Pl., ed. 2, 1: 543 (1762). RCN: 2983.
 Lectotype (Fawcett & Rendle, Fl. Jamaica 4: 114. 1920): Browne, Herb. Linn. No. 528.32 (LINN).
 Current name:  Chamaecrista glandulosa  (L.) Greene (Fabaceae: Caesalpinioideae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part C), pp. 370-473 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 392, DOI: 10.5281/zenodo.291971
The Solar Neutrino Puzzle: An Oscillation Solution with Maximal Neutrino Mixing
Creators: name: Baltz, Anthony J.
name: Goldhaber, Alfred Scharff
name: Goldhaber, Maurice
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: If, as suggested by the SuperKamiokande results, the mu neutrino and tau neutrino are maximally and ``rapidly'' mixed, this alone determines the mapping from current to mass eigenstates up to one rotation angle (theta) mixing the electron neutrino ``more slowly'', with an equal combination of the mu neutrino and tau neutrino. For sin 2 theta = 1, the resulting minimal number of free parameters, yet maximal mixing, shows agreement between extant observations of solar neutrinos and predictions by the standard solar model with minor modifications.
description: 10 pages, latex, revtex source, two postscript figures
Additional file 1 of Do patients with cN0 oral squamous cell carcinoma benefit from elective neck dissection? A large-scale population-based study
Creators: name: Wu, Qiuyu
name: Xia, Yuanhang
name: Qiu, Ling
name: Wen, Shuqiong
name: Li, Qunxing
name: Gao, Xiang
name: Jiang, Wenrong
name: Wang, Tao
name: Ji, Ping
name: Ou, Zhanpeng
Publisher: name: figshare
Year: 2024
Subjects: subject: Cell Biology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: Additional file 1: Supplementary Figure 1. DSS curves of patients with cN0 OSCC according to (A) sex, (B) age group, (C) race, (D) marital status, (E) T, (F) M, (G) primary sites, (H) surgery, (I) radiation, (J) chemotherapy. Supplementary Figure 2. OS curves of patients with cN0 OSCC according to (A) sex, (B) age group, (C) race, (D) marital status, (E) T, (F) M, (G) primary sites, (H) surgery, (I) radiation, (J) chemotherapy. Supplementary Figure 3. Forest plots summarizing HR for (A) DSS and (B) OS. Supplementary Figure 4. DSS curves of patients with cN0 OSCC according to (A) age, (B) race, (C) primary sites, (D) T, (D) M, (E) Radiation, (F) Chemotherapy with END subgroups analysis. Supplementary Figure 5. OS curves of patients with cN0 OSCC according to (A) age, (B) race, (C) primary sites, (D) T, (D) M, (E) Radiation, (F) Chemotherapy with END subgroups analysis. Supplementary Figure 6. Subgroup analysis of END and surgery of patients with cN0 OSCC. Supplementary Figure 7. DSS and OS curves of patients with cN0 OSCC according to different treatment categories. Supplementary Figure 8. DSS of cN0 OSCC patients only performed primary sites surgery without radiation and chemotherapy according to (A) primary sites, (B) age, (C) race, (D) marital status and (E) M with END subgroups analysis. Supplementary Figure 9. OS of cN0 OSCC patients only performed primary sites surgery without radiation and chemotherapy according to (A) primary sites, (B) age, (C) race, (D) marital status and (E) M with END subgroups analysis.
Senna hirsuta var. hirsuta H. S. Irwin & Barneby var. hirsuta
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Senna
Senna hirsuta
Senna hirsuta (l.) h.s. irwin & barneby var. hirsuta

description: Cassia hirsuta Linnaeus, Species Plantarum 1: 378. 1753.
"Habitat in America." RCN: 2973.
 Lectotype (Brenan in Milne-Redhead & Polhill, Fl. Trop. E. Africa, Leguminosae 2: 80. 1967): Herb. Clifford: 159, Cassia 4 (BM-000558726).
 Current name:  Senna hirsuta  (L.) H.S. Irwin & Barneby var.  hirsuta  (Fabaceae: Caesalpinioideae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part C), pp. 370-473 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 392, DOI: 10.5281/zenodo.291971
Blakeslee_SupportingTables_Figures_ESM from Invasion of the body snatchers: the role of parasite introduction in host distribution and response to salinity in invaded estuaries
Creators: name: Blakeslee, April M. H.
name: Pochtar, Darby L.
name: Fowler, Amy E.
name: Moore, Chris S.
name: Lee, Timothy S.
name: Barnard, Rebecca B.
name: Swanson, Kyle M.
name: Lukas, Laura
name: Ruocchio, Matthew
name: Torchin, Mark E.
name: Miller, A. Whitman
name: Ruiz, Gregory M.
name: Tepolt, Carolyn K.
Publisher: name: The Royal Society
Year: 2021
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology

description: This file contains supporting information, including supplemental methods, results, tables and figures. An index of the contents is provided on pages 1-2.
Metastable states of spin glasses on random thin graphs
Creators: name: Dean, D. S.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: In this paper we calculate the mean number of metastable states for spin glasses on so called random thin graphs with couplings taken from a symmetric binary distribution $\pm J$. Thin graphs are graphs where the local connectivity of each site is fixed to some value $c$. As in totally connected mean field models we find that the number of metastable states increases exponentially with the system size. Furthermore we find that the average number of metastable states decreases as $c$ in agreement with previous studies showing that finite connectivity corrections of order $1/c$ increase the number of metastable states with respect to the totally connected mean field limit. We also prove that the average number of metastable states in the limit $c\to\infty$ is finite and converges to the average number of metastable states in the Sherrington-Kirkpatrick model. An annealed calculation for the number of metastable states $N_{MS}(E)$ of energy $E$ is also carried out giving a lower bound on the ground state energy of these spin glasses. For small $c$ one may obtain analytic expressions for $$.
description: 13 pages LateX, 3 figures .eps
The Massively Accreting Cluster A2029
Creators: name: Sohn, Jubee
name: Geller, Margaret J.
name: Walker, Stephen A.
name: Dell'Antonio, Ian
name: Diaferio, Antonaldo
name: Rines, Kenneth J.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We explore the structure of galaxy cluster Abell 2029 and its surroundings based on intensive spectroscopy along with X-ray and weak lensing observations. The redshift survey includes 4376 galaxies (1215 spectroscopic cluster members) within 40 arcmin of the cluster center; the redshifts are included here. Two subsystems, A2033 and a Southern Infalling Group (SIG) appear in the infall region based on the spectroscopy as well as on the weak lensing and X-ray maps. The complete redshift survey of A2029 also identifies at least 12 foreground and background systems (10 are extended X-ray sources) in the A2029 field; we include a census of their properties. The X-ray luminosities $L_{X}$ - velocity dispersions ($σ_{cl}$) scaling relations for A2029, A2033, SIG, and the foreground/background systems are consistent with the known cluster scaling relations. The combined spectroscopy, weak lensing, and X-ray observations provide a robust measure of the masses of A2029, A2033, and SIG. The total mass of the infalling groups (A2033 and SIG) is $\sim 60\%$ of the M200 of the primary cluster, A2029. Simple dynamical consid- erations suggest that A2029 will accrete these subsystems in next few Gyr. In agreement with simulations and with other clusters observed in a similar redshift range, the total mass in the A2029 infall region is comparable with the A2029 M200 and will mostly be accreted in the long-term future.
description: 15 pages, 10 figures, ApJ submitted
A theorem on the real part of the high-energy scattering amplitude near the forward direction
Creators: name: Martin, André
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We show that if for fixed negative (physical) square of the momentum transfer t, the differential cross-section ${dσ\over dt}$ tends to zero and if the total cross-section tends to infinity, when the energy goes to infinity, the real part of the even signature amplitude cannot have a constant sign near t = 0.
description: 7 pages, latex
Spinwave damping in the two-dimensional ferromagnetic XY model
Creators: name: Wysin, G. M.
name: Gouvea, M. E.
name: Pires, A. S. T.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: The effect of damping of spinwaves in a two-dimensional classical ferromagnetic XY model is considered. The damping rate $Γ_{q}$ is calculated using the leading diagrams due to the quartic-order deviations from the harmonic spin Hamiltonian. The resulting four-dimensional integrals are evaluated by extending the techniques developed by Gilat and others for spectral density types of integrals. $Γ_{q}$ is included into the memory function formalism due to Reiter and Solander, and Menezes, to determine the dynamic structure function $S(q,ω)$. For the infinite sized system, the memory function approach is found to give non-divergent spinwave peaks, and a smooth nonzero background intensity (``plateau'' or distributed intensity) for the whole range of frequencies below the spinwave peak. The background amplitude relative to the spinwave peak rises with temperature, and eventually becomes higher than the spinwave peak, where it appears as a central peak. For finite-sized systems, there are multiple sequences of weak peaks on both sides of the spinwave peaks whose number and positions depend on the system size and wavevector in integer units of $2π/L$. These dynamical finite size effects are explained in the memory function analysis as due to either spinwave difference processes below the spinwave peak or sum processes above the spinwave peak. These features are also found in classical Monte Carlo -- Spin-Dynamics simulations.
description: 20 two-column pages
MOESM13 of A novel signature derived from immunoregulatory and hypoxia genes predicts prognosis in liver and five other cancers
Creators: name: Chang, Wai
name: Donall Forde
name: Lai, Alvina
Publisher: name: figshare
Year: 2019
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 13. Ordination plots of multidimensional scaling analysis of the 8-gene signature in cancers using Euclidean distances revealed significant separation of tumor (T) and non-tumor (NT) samples represented in a 2-dimensional space. Axes represent the first and second dimension. The distinction of T and NT was confirmed by PERMANOVA tests.
Production of pseudoscalar Higgs-bosons in $e\,γ$ collisions
Creators: name: Dicus, Duane A.
name: Repko, Wayne W.
Publisher: name: arXiv
Year: 1996
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We investigate the production of a pseudoscalar Higgs-boson $A^0$ using the reaction $e\,γ\rightarrow e\,A^0$ at an $e\bar{e}$ collider with center of mass energy of 500 GeV. Supersymmetric contributions are included and provide a substantial enhancement to the cross section for most values of the symmetry breaking parameters. We find that, despite the penalty incurred in converting one of the beams into a source of backscattered photons, the $e\, γ$ process is a promising channel for the detection of the $A^0$.
description: 9 pages RevTex + 2 Postscript figures tar.gzip.uuencoded
Additional file 4: of PePIF1, a P-lineage of PIF-like transposable element identified in protocorm-like bodies of Phalaenopsis orchids
Creators: name: Hsu, Chia-Chi
name: Pei-Han Lai
name: Tien-Chih Chen
name: Wen-Chieh Tsai
name: Jui-Lin Hsu
name: Hsiao, Yu-Yun
name: Wen-Luan Wu
name: Ching-Hsiu Tsai
name: Wen-Huei Chen
name: Hong-Hwa Chen
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Table S2. Predicted autonomous elements of PePIF1 in the genome sequence of P. equestris. (DOCX 21 kb)
Handling polymorphic algebraic effects
Creators: name: Sekiyama, Taro
name: Igarashi, Atsushi
Publisher: name: arXiv
Year: 2018
Subjects: subject: Programming Languages (cs.PL)
subject: FOS: Computer and information sciences

description: Algebraic effects and handlers are a powerful abstraction mechanism to represent and implement control effects. In this work, we study their extension with parametric polymorphism that allows abstracting not only expressions but also effects and handlers. Although polymorphism makes it possible to reuse and reason about effect implementations more effectively, it has long been known that a naive combination of polymorphic effects and let-polymorphism breaks type safety. Although type safety can often be gained by restricting let-bound expressions---e.g., by adopting value restriction or weak polymorphism---we propose a complementary approach that restricts handlers instead of let-bound expressions. Our key observation is that, informally speaking, a handler is safe if resumptions from the handler do not interfere with each other. To formalize our idea, we define a call-by-value lambda calculus that supports let-polymorphism and polymorphic algebraic effects and handlers, design a type system that rejects interfering handlers, and prove type safety of our calculus.
description: Added the errata for the ESOP'19 paper (page 28)
The Parikh Property for Weighted Context-Free Grammars
Creators: name: Ganty, Pierre
name: Gutiérrez, Elena
Publisher: name: arXiv
Year: 2018
Subjects: subject: Formal Languages and Automata Theory (cs.FL)
subject: FOS: Computer and information sciences

description: Parikh's Theorem states that every context-free grammar (CFG) is equivalent to some regular CFG when the ordering of symbols in the words is ignored. The same is not true for the so-called weighted CFGs, which additionally assign a weight to each grammar rule. If the result holds for a given weighted CFG $G$, we say that $G$ satisfies the Parikh property. We prove constructively that the Parikh property holds for every weighted nonexpansive CFG. We also give a decision procedure for the property when the weights are over the rationals.
description: 29 pages, 2 figures, long version of FSTTCS'18 paper
Knizhnik-Zamolodchikov-type equations for gauged WZNW models
Creators: name: Kogan, I. I.
name: Lewis, A.
name: Soloviev, O. A.
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We study correlation functions of coset constructions by utilizing the method of gauge dressing. As an example we apply this method to the minimal models and to the Witten 2D black hole. We exhibit a striking similarity between the latter and the gravitational dressing. In particular, we look for logarithmic operators in the 2D black hole.
description: 24 pages, latex, no figures. More discussion of logarithmic operators was added
Additional file 3: of PePIF1, a P-lineage of PIF-like transposable element identified in protocorm-like bodies of Phalaenopsis orchids
Creators: name: Hsu, Chia-Chi
name: Pei-Han Lai
name: Tien-Chih Chen
name: Wen-Chieh Tsai
name: Jui-Lin Hsu
name: Hsiao, Yu-Yun
name: Wen-Luan Wu
name: Ching-Hsiu Tsai
name: Wen-Huei Chen
name: Hong-Hwa Chen
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Plant Biology
subject: 60506 Virology

description: Figure S2. Multiple alignment of the amino acid sequence of ORF1s (a) and TPases (b). (DOCX 778 kb)