cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 2: Figure. S1. of Effects of hepatitis C virus core protein and nonstructural protein 4B on the Wnt/Î˛-catenin pathway
Creators: name: Jiang, Xiao-Hua
name: Xie, Yu-Tao
name: Cai, Ya-Ping
name: Ren, Jing
name: Ma, Tao
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Sequencing results of the pLenti6.3-Core, pLenti6.3-NS4B and pLenti6.3-mkate2 (partial). (DOCX 274Â kb)
Acontias plumbeus subsp. tasmani Hewitt 1938
Creators: name: Conradie, Werner
name: Branch, William R.
name: Watson, Gillian
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Reptilia
Squamata
Scincidae
Acontias
Acontias plumbeus
Acontias plumbeus tasmani hewitt, 1938

description: Acontias plumbeus tasmani Hewitt, 1938
Transactions of the Royal Society of South Africa, 26:44; Plate III; Figs 6–7.
Current name: Acontias orientalis Hewitt, 1938.
Lectotype: PEM R5152 (formerly AMG 5193); Dunbrody, Sundays River, Eastern Cape Province, South Africa; Rev. K. Tasman, 5 December 1925.
Paralectotypes (4): PEM R5154–6, 5165 (formerly AMG 5195); Dunbrody, Uitenhage district, Eastern Cape Province, South Africa; Rev. K. Tasman, 7 December 1925.
Remarks. The type description refers to ‘a series of specimens from Dunbrody, Sundays River’ collected by Rev. K. Tasman. There are six AMG series of specimens from this type locality in the PEM, i.e. AMG 7053 (21 specimens—PEM R5153, 5157–5159, 5162–5164, 5168, 5170–5180 and 5192–3), AMG 5465 (PEM R5167), AMG 5166 (PEM R5166), AMG 5195 (four specimens—PEM R5154–5156, 5165), AMG 5193 (PEM R5152), and AMG 7087 (two specimens—PEM R5160, 5169). Only the series of specimens AMG 5195 and 5193 can be assigned to the Rev. K. Tasman collection. We thus restrict the type series to these two series of specimens and the remainder must be regarded as additional topotypic material. Donald Broadley designated PEM R5152 as lectotype (handwritten label dated 16 March 1968; Broadley & Greer, 1969) and we follow that assignment. The lectotype is in good condition with a ventral flap anterior to the cloaca. We can with confidence assign the specimen in Figure 6 to PEM R5166 (collected by J. Hewitt at Dunbrody) and the specimen in Figure 7 to PEM R5186 (collected in Port Elizabeth, 22 March 1936). In the type description Hewitt refers to other collections from Uitenhage (unaccounted for in PEM), Redhouse (PEM R5183, 5190, 5191), Port Elizabeth (PEM R5181, 5182, 5184, 5186–5189), Klienpoort near Grahamstown (PEM R5770) and Resolution (PEM R5157, 5148, 5149–5151) which represent additional non-type material. Hewitt illustrated two specimens in Plate III.
description: Published as part of Conradie, Werner, Branch, William R. & Watson, Gillian, 2019, Type specimens in the Port Elizabeth Museum, South Africa, including the historically important Albany Museum collection. Part 2: Reptiles (Squamata), pp. 1-45 in Zootaxa 4576 (1) on page 28, DOI: 10.11646/zootaxa.4576.1.1, http://zenodo.org/record/2624562
Funchalia villosa
Creators: name: Poupin, Joseph
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Penaeidae
Funchalia
Funchalia villosa

description: Funchalia villosa (Bouvier, 1905)
Funchalia villosa – Judkins 2014: fig. 6, French Guiana region [potentially, based on general geographic distribution].
Distribution/Habitat
Worldwide; marine (pelagic, bathypelagic); 50–2608 m.
description: Published as part of Poupin, Joseph, 2024, A documented checklist of the Crustacea (Stomatopoda, Decapoda) of the southern Guianas (Guyana, Suriname, French Guiana, Brazil Amapá), pp. 1-197 in European Journal of Taxonomy 954 (1) on page 26, DOI: 10.5852/ejt.2024.954.2653, http://zenodo.org/record/13734759
Additional file 1: Table S1. of Effects of hepatitis C virus core protein and nonstructural protein 4B on the Wnt/Î˛-catenin pathway
Creators: name: Jiang, Xiao-Hua
name: Xie, Yu-Tao
name: Cai, Ya-Ping
name: Ren, Jing
name: Ma, Tao
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: Primers for PCR. (DOCX 17Â kb)
Introducing the Sign Language Flowchart: Towards Enhancing Programming Learning for Students with Hearing Disabilities
Creators: name: Abushaira, Mohamed
name: Abushaira, https://orcid.org/0000-0002-3670-4320
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 520102
subject: Educational psychology
classificationCode: 390411
subject: Special education and disability

description: There is a dependence on software applications in many aspects of contemporary life. Teaching programming to individuals has become one of the focal points in the strategic plans of many countries. It is evident that students with hearing disabilities face difficulties in learning programming, which means a significant percentage of society encounters challenges in acquiring programming skills. The first step in learning programming is understanding flowcharts and using them to design simple programs. Therefore, to address the difficulties faced by students with hearing disabilities, we have translated flowcharts into sign language, resulting in the creation of Sign Language Flowcharts. To scientifically explore the performance of students with hearing disabilities in understanding flowcharts, a series of training sessions was conducted. The results confirmed the difficulties faced by students with hearing disabilities in grasping flowchart concepts. We took the previous results as motivation to develop Sign Language Flowcharts, which is the outcome of translating flowcharts into sign language. The results demonstrate the effectiveness of Sign Language Flowcharts in enhancing the understanding of flowchart concepts for students with hearing disabilities
Additional file 9: Figure S5. of Type 2 diabetes and obesity induce similar transcriptional reprogramming in human myocytes
Creators: name: VĂ¤Remo, Leif
name: Henriksen, Tora
name: Scheele, Camilla
name: Broholm, Christa
name: Pedersen, Maria
name: UhlĂŠn, Mathias
name: Pedersen, Bente
name: Nielsen, Jens
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Hematology

description: Hallmark gene-set analysis results. (PDF 46 kb)
Additional file 1: Table S1. of Effects of hepatitis C virus core protein and nonstructural protein 4B on the Wnt/Î˛-catenin pathway
Creators: name: Jiang, Xiao-Hua
name: Xie, Yu-Tao
name: Cai, Ya-Ping
name: Ren, Jing
name: Ma, Tao
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Primers for PCR. (DOCX 17Â kb)
Metapenaeopsis goodei
Creators: name: Poupin, Joseph
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Penaeidae
Metapenaeopsis
Metapenaeopsis goodei

description: Metapenaeopsis goodei (Smith, 1885)
Penaeopsis goodei – Bullis & Thompson 1965: 5, Guyana [R/V Oregon, stn 2249, 7°40′ N, 57°34′ W, 30 fathoms, 55 m].
Metapenaeopsis goodei – Pérez Farfante 1971: 9, Suriname [R/V Pillsbury, 14 July 1968, stn 648, 55–59 m]. — D’Incao 1998: 312, Brazil Amapá. — Coelho et al. 2006: tab. 1, Brazil Amapá.
Distribution/Habitat
WA; marine; 1– 329 m.
description: Published as part of Poupin, Joseph, 2024, A documented checklist of the Crustacea (Stomatopoda, Decapoda) of the southern Guianas (Guyana, Suriname, French Guiana, Brazil Amapá), pp. 1-197 in European Journal of Taxonomy 954 (1) on page 26, DOI: 10.5852/ejt.2024.954.2653, http://zenodo.org/record/13734759
Acontias wakkerstroomensis Conradie, Busschau & Edwards 2018
Creators: name: Conradie, Werner
name: Branch, William R.
name: Watson, Gillian
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Reptilia
Squamata
Scincidae
Acontias
Acontias wakkerstroomensis

description: Acontias wakkerstroomensis Conradie, Busschau & Edwards, 2018
Zootaxa, 4429(1):99; Figs. 5–7.
Holotype: PEM R22788; north of Wakkerstroom on Amersfoort road, (- 27.28250 S, 30.11750 E; 2730AC, 1847 m a.s.l.), Mpumalanga Province, South Africa; W. Conradie, C. Conradie and M. Morrison, 23 December 2015. Remarks. Holotype with mid-ventral incisions, in good condition.
description: Published as part of Conradie, Werner, Branch, William R. & Watson, Gillian, 2019, Type specimens in the Port Elizabeth Museum, South Africa, including the historically important Albany Museum collection. Part 2: Reptiles (Squamata), pp. 1-45 in Zootaxa 4576 (1) on page 29, DOI: 10.11646/zootaxa.4576.1.1, http://zenodo.org/record/2624562
Additional file 8: Figure S4. of Type 2 diabetes and obesity induce similar transcriptional reprogramming in human myocytes
Creators: name: VĂ¤Remo, Leif
name: Henriksen, Tora
name: Scheele, Camilla
name: Broholm, Christa
name: Pedersen, Maria
name: UhlĂŠn, Mathias
name: Pedersen, Bente
name: Nielsen, Jens
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology

description: ENCODE histone modification gene-set analysis results. (PDF 91 kb)
Parapenaeus politus
Creators: name: Poupin, Joseph
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Penaeidae
Parapenaeus
Parapenaeus politus

description: Parapenaeus politus (Smith, 1881)
Parapenaeus politus – Le Loeuff & Cosel 2000: 25, annex 1, French Guiana. — Corbari et al. 2015: 165–167, French Guiana [14 lots, e.g., http://coldb.mnhn.fr/catalognumber/mnhn/iu/2013-2528].
non Parapenaeus longirostris (H. Lucas, 1849) – Takeda 1983: 38, Suriname, French Guiana [24– 475 m]. — Guéguen 2000: 692, tab. 1, French Guiana [200–232 m]. See Remark.
Distribution/Habitat
WA; marine; 3– 752 m.
Remark
Parapenaeus politus (WA) and P. longirostris (EA) are two sibling species distributed on each side of the Atlantic (Pérez Farfante 1982). WA records of P. longirostris corrected herein to P. politus.
description: Published as part of Poupin, Joseph, 2024, A documented checklist of the Crustacea (Stomatopoda, Decapoda) of the southern Guianas (Guyana, Suriname, French Guiana, Brazil Amapá), pp. 1-197 in European Journal of Taxonomy 954 (1) on page 27, DOI: 10.5852/ejt.2024.954.2653, http://zenodo.org/record/13734759
Scelotes natalensis Hewitt 1921
Creators: name: Conradie, Werner
name: Branch, William R.
name: Watson, Gillian
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Reptilia
Squamata
Scincidae
Scelotes
Scelotes natalensis

description: Scelotes natalensis Hewitt, 1921
Annals of the Durban Museum, 3:3–6; Fig. 1.
Current name: Scelotes inornatus (Smith, 1849).
Syntype: PEM R5310 (formerly NMP 0101); Durban, KwaZulu-Natal Province, South Africa; Mrs. S. Collins, 16 June 1918.
Remarks. Type description refers to two specimens in the DMP. One must have been donated to Albany Museum (now PEM R5310), and this syntype is in good condition.
description: Published as part of Conradie, Werner, Branch, William R. & Watson, Gillian, 2019, Type specimens in the Port Elizabeth Museum, South Africa, including the historically important Albany Museum collection. Part 2: Reptiles (Squamata), pp. 1-45 in Zootaxa 4576 (1) on page 30, DOI: 10.11646/zootaxa.4576.1.1, http://zenodo.org/record/2624562
Metapenaeopsis martinella Perez Farfante 1971
Creators: name: Poupin, Joseph
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Penaeidae
Metapenaeopsis
Metapenaeopsis martinella

description: Metapenaeopsis martinella Pérez Farfante, 1971
Metapenaeopsis martinella Pérez Farfante, 1971: 16, Suriname [R/V Pillsbury, stn 648, 14 July 1968, 55–59 m, USNM].
Metapenaeopsis martinella – Ramos-Porto et al. 1987: 228, Brazil Amapá. — D’Incao 1998: 312, Brazil Amapá. — Coelho et al. 2006: tab. 1, Brazil Amapá.
Distribution/Habitat
WA; marine; 4– 137 m.
description: Published as part of Poupin, Joseph, 2024, A documented checklist of the Crustacea (Stomatopoda, Decapoda) of the southern Guianas (Guyana, Suriname, French Guiana, Brazil Amapá), pp. 1-197 in European Journal of Taxonomy 954 (1) on pages 26-27, DOI: 10.5852/ejt.2024.954.2653, http://zenodo.org/record/13734759
Penaeus aztecus Ives 1891
Creators: name: Poupin, Joseph
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Penaeidae
Penaeus
Penaeus aztecus

description: Penaeus aztecus Ives, 1891
Penaeus aztecus – Holthuis 1948: 1104, Suriname [mouth of Suriname River, shrimp trap]; 1959a: 63, Suriname, French Guiana [0.1– 55 m]. — Durand 1959: 31, French Guiana. — Bullis & Thompson 1959: 6, off French Guiana region [R/V Oregon, shrimp trawl, “Brown shrimp”]. — Tricart & Foubert 2000: tab. 1, French Guiana [list].
Distribution/Habitat
WA; marine; 1– 110 m.
description: Published as part of Poupin, Joseph, 2024, A documented checklist of the Crustacea (Stomatopoda, Decapoda) of the southern Guianas (Guyana, Suriname, French Guiana, Brazil Amapá), pp. 1-197 in European Journal of Taxonomy 954 (1) on page 27, DOI: 10.5852/ejt.2024.954.2653, http://zenodo.org/record/13734759
Additional file 7: Figure S3. of Type 2 diabetes and obesity induce similar transcriptional reprogramming in human myocytes
Creators: name: VĂ¤Remo, Leif
name: Henriksen, Tora
name: Scheele, Camilla
name: Broholm, Christa
name: Pedersen, Maria
name: UhlĂŠn, Mathias
name: Pedersen, Bente
name: Nielsen, Jens
Publisher: name: Figshare
Year: 2017
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Marine Biology

description: Analysis of expressed quantitative trait loci. (PDF 105 kb)
Scolecoseps broadleyi Verburgt, Verburgt & Branch 2018
Creators: name: Conradie, Werner
name: Branch, William R.
name: Watson, Gillian
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Reptilia
Squamata
Scincidae
Scolecoseps
Scolecoseps broadleyi

description: Scolecoseps broadleyi Verburgt, Verburgt & Branch, 2018
African Journal of Herpetology, 67(1):5; Figs. 2–3
Paratypes (4): a) PEM R22697; from near Maganja (10°50’08.2”S, 40°33’25.4”E), Palma District, Cabo Delgado Province, Mozambique; L. Verburgt, 24 August 2013. b) PEM R22698; near Quionga, 20 km north of Palma (10°35’55.4”S, 40°29’40.8”E), Palma District, Cabo Delgado Province, Mozambique; L. Verburgt, 4 December 2013. c) PEM R22699; 15 km inland from Olumbe, 20 km S of Palma (10°59’23.8”S, 40°25’13.8”E), Palma District, Cabo Delgado Province, Mozambique; L. Verburgt, 21 February 2014. d) PEM R22696; 10 km inland from Olumbe, 20 km south of Palma (11°00’15.6”S, 40°21’47.5”E), Palma District, Cabo Delgado Province, Mozambique; L. Verburgt, 22 February 2014.
Remarks. All paratypes are in good condition. The holotype is in NMZB according to the type description.
description: Published as part of Conradie, Werner, Branch, William R. & Watson, Gillian, 2019, Type specimens in the Port Elizabeth Museum, South Africa, including the historically important Albany Museum collection. Part 2: Reptiles (Squamata), pp. 1-45 in Zootaxa 4576 (1) on page 30, DOI: 10.11646/zootaxa.4576.1.1, http://zenodo.org/record/2624562
Additional file 6: Figure S2. of Type 2 diabetes and obesity induce similar transcriptional reprogramming in human myocytes
Creators: name: VĂ¤Remo, Leif
name: Henriksen, Tora
name: Scheele, Camilla
name: Broholm, Christa
name: Pedersen, Maria
name: UhlĂŠn, Mathias
name: Pedersen, Bente
name: Nielsen, Jens
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Virology

description: Volcano plots and pairwise correlation between fold changes of the T2D, OB, and T2D&OB groups compared to controls. (PDF 2801 kb)
Typhlosaurus aurantiacus subsp. parietalis Broadley 1990
Creators: name: Conradie, Werner
name: Branch, William R.
name: Watson, Gillian
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Reptilia
Squamata
Scincidae
Typhlosaurus
Typhlosaurus aurantiacus
Typhlosaurus aurantiacus parietalis broadley, 1990

description: Typhlosaurus aurantiacus parietalis Broadley, 1990
Arnoldia Zimbabwe, 9:469.
Current name: Acontias parietalis (Broadley, 1990)
Paratypes (3): a) PEM R9418–9419 (formerly AMG1597); Mseleni, KwaZulu-Natal Province, South Africa; collector and date unknown. b) PEM R9420 (formerly AMG 7607); Manaba, KwaZulu-Natal Province, South Africa; collector and date unknown.
Remarks: The original labels on PEM R9418–19 read ‘no. 1597 Durban Museum, Pietermaritzburg’. The type description refers to both AMG 1597 and additional material NMP (112 and 128) from the same locality as the paratypes. We therefore believe that the PEM specimens were donated to the AMG by NMP, but no documentation to this effect exists. Bleached but otherwise in good condition. Elevated to full species by Pietersen et al. (2018).
description: Published as part of Conradie, Werner, Branch, William R. & Watson, Gillian, 2019, Type specimens in the Port Elizabeth Museum, South Africa, including the historically important Albany Museum collection. Part 2: Reptiles (Squamata), pp. 1-45 in Zootaxa 4576 (1) on page 30, DOI: 10.11646/zootaxa.4576.1.1, http://zenodo.org/record/2624562
Penaeus brasiliensis Latreille 1817
Creators: name: Poupin, Joseph
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Penaeidae
Penaeus
Penaeus brasiliensis

description: Penaeus brasiliensis Latreille, 1817
Penaeus brasiliensis – Young 1900: 452, Guyana. — Bullis & Thompson 1959: 4, off French Guiana region [R/V Oregon, shrimp trawl, “Pink shrimp”]; 1965: 6, Suriname [R/V Oregon, stn 2249, 7°40′ N, 57°34′ W, 30 fathoms, 55 m]. — Durand 1959: 31, French Guiana. — Holthuis 1959a: 66, Suriname, French Guiana. — Takeda 1983: 33, Suriname, French Guiana [21–90 m]. — D’Incao 1998: 313, Brazil Amapá. — Le Loeuff & Cosel 2000: 25, annex 1, French Guiana. — Corbari et al. 2015: 165–167, French Guiana [6 lots, e.g., http://coldb.mnhn.fr/catalognumber/mnhn/iu/2013-2430]. — Cintra et al. 2017: tabs 1–6, Brazil Amapá [by-catch of shrimp fisheries, 27–47 m]. — Silva et al. 2020: tab. 1, Brazil Amapá.
Penaeus (Melicertus) brasiliensis – Pérez Farfante 1969: 565, Guyana, Suriname, French Guiana.
Farfantepenaeus brasiliensis – Silva et al. 2002a: 14, Brazil Amapá [92–356 m]. — Coelho et al. 2006: tab. 1, Brazil Amapá.
Distribution/Habitat
WA; marine; 1– 356 m.
description: Published as part of Poupin, Joseph, 2024, A documented checklist of the Crustacea (Stomatopoda, Decapoda) of the southern Guianas (Guyana, Suriname, French Guiana, Brazil Amapá), pp. 1-197 in European Journal of Taxonomy 954 (1) on pages 27-28, DOI: 10.5852/ejt.2024.954.2653, http://zenodo.org/record/13734759
Gate-tunable spin Hall effect in trilayer graphene/group-IV monochalcogenide van der Waals heterostructures
Creators: name: Yang, Haozhe
name: Chi, Zhendong
name: Avedissian, Garen
name: Dolan, Eoin
name: Karuppasamy, Muthumalai
name: Martín-García, Beatriz
name: Gobbi, Marco
name: Sofer, Zdenek
name: Hueso, Luis E.
name: Casanova, Fèlix
Publisher: name: arXiv
Year: 2024
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Spintronic devices require materials that facilitate effective spin transport, generation, and detection. In this regard, graphene emerges as an ideal candidate for long-distance spin transport owing to its minimal spin-orbit coupling, which, however, limits its capacity for effective spin manipulation. This problem can be overcome by putting spin-orbit coupling materials in close contact to graphene leading to spin-orbit proximity and, consequently, efficient spin-to-charge conversion through mechanisms such as the spin Hall effect. Here, we report and quantify the gate-dependent spin Hall effect in trilayer graphene proximitized with tin sulfide (SnS), a group-IV monochalcogenide which has recently been predicted to be a viable alternative to transition-metal dichalcogenides for inducing strong spin-orbit coupling in graphene. The spin Hall angle exhibits a maximum around the charge neutrality point of graphene up to room temperature. Our findings expand the library of materials that induce spin-orbit coupling in graphene to a new class, group-IV monochalcogenides, thereby highlighting the potential of two-dimensional materials to pave the way for the development of innovative spin-based devices and future technological applications.
description: 26 pages, 11 figures. arXiv admin note: text overlap with arXiv:2305.01787, arXiv:2312.10227
Penaeopsis serrata Spence Bate 1881
Creators: name: Poupin, Joseph
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Penaeidae
Penaeopsis
Penaeopsis serrata

description: Penaeopsis serrata Spence Bate, 1881
Penaeopsis megalops – Bullis & Thompson 1965: 5, Guyana, Suriname [R/V Oregon, stns 2004 to 2009]. — Williams 1965: 5, Suriname. — Takeda 1983: 37, Suriname, French Guiana [200–500 m]. Penaeopsis megalops (Smith, 1885) accepted as Penaeopsis serrata Spence Bate, 1881 in WoRMS (2023).
Penaeopsis serrata – Pérez Farfante 1980a: 750, Guyana, French Guiana [366–457 m]. — Guéguen 2000: 692, tab. 1, French Guiana [210–479 m]. — Silva et al. 2002a: 23, Brazil Amapá [312 m]; 2020: tab. 1, Brazil Amapá. — Coelho et al. 2006: tab. 1, Brazil Amapá. — Corbari et al. 2015: 165–167, French Guiana [11 lots, e.g., http://coldb.mnhn.fr/catalognumber/mnhn/iu/2013-2561].
Distribution/Habitat
ATL; marine; 120– 750 m.
description: Published as part of Poupin, Joseph, 2024, A documented checklist of the Crustacea (Stomatopoda, Decapoda) of the southern Guianas (Guyana, Suriname, French Guiana, Brazil Amapá), pp. 1-197 in European Journal of Taxonomy 954 (1) on page 27, DOI: 10.5852/ejt.2024.954.2653, http://zenodo.org/record/13734759
Penaeus isabelae
Creators: name: Poupin, Joseph
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Penaeidae
Penaeus
Penaeus isabelae

description: Penaeus isabelae (Tavares & Gusmão, 2016)
Farfantepenaeus isabelae Tavares & Gusmão, 2016: 509, Suriname, French Guiana [R/V Oregon II, April–May 1969; 22–66 m].
Distribution/Habitat
WA; marine; 22– 192 m.
description: Published as part of Poupin, Joseph, 2024, A documented checklist of the Crustacea (Stomatopoda, Decapoda) of the southern Guianas (Guyana, Suriname, French Guiana, Brazil Amapá), pp. 1-197 in European Journal of Taxonomy 954 (1) on page 28, DOI: 10.5852/ejt.2024.954.2653, http://zenodo.org/record/13734759
Additional file 1: of A coordinated PCP-Cardiologist Telemedicine Model (PCTM) in Chinaâ  s community hypertension care: study protocol for a randomized controlled trial
Creators: name: Xu, Lei
name: Fang, Wei-Yi
name: Zhu, Fu
name: Zhang, Hong-Guang
name: Liu, Kai
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: The SPIRIT checklist. (PDF 366Â kb)
Atractaspis duerdeni Gough 1907
Creators: name: Conradie, Werner
name: Branch, William R.
name: Watson, Gillian
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Reptilia
Squamata
Lamprophiidae
Atractaspis
Atractaspis duerdeni

description: Atractaspis duerdeni Gough, 1907
Records of the Albany Museum, 2:178.
Holotype: PEM R7938; Serowe, Botswana; S. Blackbeard, 3 May 1904. Remarks. The type specimen is bleached and without any signs of pattern. There is a mid-ventral incision, and an old scar dorsally behind the head.
description: Published as part of Conradie, Werner, Branch, William R. & Watson, Gillian, 2019, Type specimens in the Port Elizabeth Museum, South Africa, including the historically important Albany Museum collection. Part 2: Reptiles (Squamata), pp. 1-45 in Zootaxa 4576 (1) on page 30, DOI: 10.11646/zootaxa.4576.1.1, http://zenodo.org/record/2624562
Additional file 1: Figure S1. of N-of-1-pathways MixEnrich: advancing precision medicine via single-subject analysis in discovering dynamic changes of transcriptomes
Creators: name: Qike Li
name: A. Schissler
name: Gardeux, Vincent
name: Ikbel Achour
name: Kenost, Colleen
name: Berghout, Joanne
name: Haiquan Li
name: Zhang, Hao
name: Lussier, Yves
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: MixEnrich shows higher performance than other single-subject methods. We repeated the case study using another dataset that contains matched tumor and normal samples for 142 breast invasive carcinoma patients. Each boxplot corresponding to the N-of-1-pathways methods (MixEnrich in purple, MD in green, and Wilcoxon in orange) consists of 15 AUCs resulting from 15 testing patients. Table S1. Overlap of dysregulated genes (DEG) between the ones in quasi-gold standard and the ones discovered from single patients. Table S2. GO-BP terms do not exist in the quasi-gold standard but are identified as dysregulated by MixEnrich from patient A6H7. Table S3. GO-BP terms identified as dysregulated by MixEnrich from all 15 head and neck squamous cell carcinoma patients (HNSCCs) patients. Table S4. Summary statistics of expression levels for the three data sets (Datasets). According to the first quartile of the three datasets, all three contain a large amount of lowly expressed genes. Table S5. Summary statistics of the expression levels for the genes annotated to the dysregulated GO-BPs identified from each of the 15 testing patients. Table S6. Summary statistics of the expression levels for the genes annotated to the any GO-BPs investigated in the HNSC validation case study. Table S7. True positive rate (TPR) and false positive rate (FPR) of MixEnrich at the final enrichment step (pathways) are improved as compared to the initial clustering step (mRNAs). We randomly chose 1000 pathway dysregulation scenarios from the simulation study (Generation of the simulated dataset). For each dysregulation scenario, we ran MixEnrich and computed TPR and FPR at the enrichment step as described in Comparing the performance of MixEnrich with Wilcoxon and MD. In addition, we computed the TPR and FPR at the clustering step, at which MixEnrich defines a positive case (dysregulated mRNA) as one whose posterior probability of being dysregulated (Eq. 4) is greater than its posterior probability of being unaltered. True positive mRNAs (TP) at the clustering step are the ones that were dysregulated in simulation and also identified as dysregulated by MixEnrich. False positive mRNAs (FP) at this step are the ones that were not dysregulated in simulation but identified as dysregulated by MixEnrich. (DOCX 36Â kb)
Additional file 1: Figure S1. of N-of-1-pathways MixEnrich: advancing precision medicine via single-subject analysis in discovering dynamic changes of transcriptomes
Creators: name: Qike Li
name: A. Schissler
name: Gardeux, Vincent
name: Ikbel Achour
name: Kenost, Colleen
name: Berghout, Joanne
name: Haiquan Li
name: Zhang, Hao
name: Lussier, Yves
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: MixEnrich shows higher performance than other single-subject methods. We repeated the case study using another dataset that contains matched tumor and normal samples for 142 breast invasive carcinoma patients. Each boxplot corresponding to the N-of-1-pathways methods (MixEnrich in purple, MD in green, and Wilcoxon in orange) consists of 15 AUCs resulting from 15 testing patients. Table S1. Overlap of dysregulated genes (DEG) between the ones in quasi-gold standard and the ones discovered from single patients. Table S2. GO-BP terms do not exist in the quasi-gold standard but are identified as dysregulated by MixEnrich from patient A6H7. Table S3. GO-BP terms identified as dysregulated by MixEnrich from all 15 head and neck squamous cell carcinoma patients (HNSCCs) patients. Table S4. Summary statistics of expression levels for the three data sets (Datasets). According to the first quartile of the three datasets, all three contain a large amount of lowly expressed genes. Table S5. Summary statistics of the expression levels for the genes annotated to the dysregulated GO-BPs identified from each of the 15 testing patients. Table S6. Summary statistics of the expression levels for the genes annotated to the any GO-BPs investigated in the HNSC validation case study. Table S7. True positive rate (TPR) and false positive rate (FPR) of MixEnrich at the final enrichment step (pathways) are improved as compared to the initial clustering step (mRNAs). We randomly chose 1000 pathway dysregulation scenarios from the simulation study (Generation of the simulated dataset). For each dysregulation scenario, we ran MixEnrich and computed TPR and FPR at the enrichment step as described in Comparing the performance of MixEnrich with Wilcoxon and MD. In addition, we computed the TPR and FPR at the clustering step, at which MixEnrich defines a positive case (dysregulated mRNA) as one whose posterior probability of being dysregulated (Eq. 4) is greater than its posterior probability of being unaltered. True positive mRNAs (TP) at the clustering step are the ones that were dysregulated in simulation and also identified as dysregulated by MixEnrich. False positive mRNAs (FP) at this step are the ones that were not dysregulated in simulation but identified as dysregulated by MixEnrich. (DOCX 36Â kb)
Philothamnus natalensis subsp. occidentalis Broadley 1966
Creators: name: Conradie, Werner
name: Branch, William R.
name: Watson, Gillian
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Reptilia
Squamata
Colubridae
Philothamnus
Philothamnus natalensis
Philothamnus natalensis occidentalis broadley, 1966

description: Philothamnus natalensis occidentalis Broadley, 1966
Annals of the Natal Museum, 18(2):417.
Current name: Philothamnus occidentalis Broadley, 1966.
Paratypes (3): a) PEM R1172 & 1773; Alice, Eastern Cape Province, South Africa; A.N. Loest, 1 September 1945 and 1 December 1944 respectively. b) PEM R1774; Baakens River, Eastern Cape Province, South Africa; J. Pringle, 5 May 1938.
Remarks: Elevated to full species by Engelbrecht et al. (2018).
description: Published as part of Conradie, Werner, Branch, William R. & Watson, Gillian, 2019, Type specimens in the Port Elizabeth Museum, South Africa, including the historically important Albany Museum collection. Part 2: Reptiles (Squamata), pp. 1-45 in Zootaxa 4576 (1) on pages 30-31, DOI: 10.11646/zootaxa.4576.1.1, http://zenodo.org/record/2624562
Penaeus monodon Fabricius 1798
Creators: name: Poupin, Joseph
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Penaeidae
Penaeus
Penaeus monodon

description: Penaeus monodon Fabricius, 1798
Penaeus monodon – Silva et al. 2002c: 77, Brazil Amapá [industrial fisheries, 35–50 m].
Distribution/Habitat
WA; marine; 0– 50 m.
Remark
This is an IP species escaped in WA from aquacultural operations but without evidence of established reproductive populations (Felder et al. 2009: note 7). The history of this introduction with discussion on potential self-sustaining populations in Brazil is presented in Tavares (2011).
description: Published as part of Poupin, Joseph, 2024, A documented checklist of the Crustacea (Stomatopoda, Decapoda) of the southern Guianas (Guyana, Suriname, French Guiana, Brazil Amapá), pp. 1-197 in European Journal of Taxonomy 954 (1) on page 28, DOI: 10.5852/ejt.2024.954.2653, http://zenodo.org/record/13734759
MOESM1 of Improving the thermostability of a fungal GH11 xylanase via site-directed mutagenesis guided by sequence and structural analysis
Creators: name: Nanyu Han
name: Huabiao Miao
name: Junmei Ding
name: Junjun Li
name: Yuelin Mu
name: Zhou, Junpei
name: Zunxi Huang
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Cancer
subject: Inorganic Chemistry
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 1: Figure S1. SDS-PAGE analysis of the recombinant xylanases. Lanes 1, 3, 5 and 7 correspond to purified XynCDBFV, N207A, G208S, and A210S from E. coli BL21 (DE3), respectively; lanes 2, 4, 6 and 8 correspond to expressed XynCDBFV, N207A, G208S, and A210S, respectively; lane 9 corresponds to control cell (harboring empty pEasy-E2 vector); lane M corresponds to standard protein molecular mass markers.
Penaeus notialis Perez Farfante 1967
Creators: name: Poupin, Joseph
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Penaeidae
Penaeus
Penaeus notialis

description: Penaeus notialis Pérez Farfante, 1967
Penaeus duorarum notialis Pérez Farfante, 1967: 94, Guyana, Suriname.
Penaeus notialis – Takeda 1983: 34, Suriname, French Guiana [21–35 m]. — D’Incao 1998: 313, Brazil Amapá.
Farfantepenaeus notialis – Coelho et al. 2006: tab. 1, Brazil Amapá.
non Penaeus duorarum Burkenroad, 1939 – Holthuis 1959a: 67, Suriname = Penaeus duorarum notialis, new subspecies in Pérez Farfante (1967: 96).
Distribution/Habitat
WA; marine; 4– 732 m.
description: Published as part of Poupin, Joseph, 2024, A documented checklist of the Crustacea (Stomatopoda, Decapoda) of the southern Guianas (Guyana, Suriname, French Guiana, Brazil Amapá), pp. 1-197 in European Journal of Taxonomy 954 (1) on page 28, DOI: 10.5852/ejt.2024.954.2653, http://zenodo.org/record/13734759
Lamprophis swazicus Schaefer 1970
Creators: name: Conradie, Werner
name: Branch, William R.
name: Watson, Gillian
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Reptilia
Squamata
Colubridae
Lamprophis
Lamprophis swazicus

description: Lamprophis swazicus Schaefer, 1970
Annals of Cape Province Museums (Natural History), 8(14):205.
Current name: Inyoka swazicus (Schaefer, 1970).
Holotype: PEM R13502 (formerly PEM R1514 /81); Forbes Reef (26°09’S, 31°05’E), Swaziland; J. Culverwell, October 1968.
Paratype: PEM R13503 (formerly PEM R1514 /82); same collection details as holotype.
Remarks. Holotype in perfect condition with four ventral longitudinal incisions. Paratype with continuous ventral incision from behind head to cloaca, in poor condition.
description: Published as part of Conradie, Werner, Branch, William R. & Watson, Gillian, 2019, Type specimens in the Port Elizabeth Museum, South Africa, including the historically important Albany Museum collection. Part 2: Reptiles (Squamata), pp. 1-45 in Zootaxa 4576 (1) on page 31, DOI: 10.11646/zootaxa.4576.1.1, http://zenodo.org/record/2624562
MOESM1 of Improving the thermostability of a fungal GH11 xylanase via site-directed mutagenesis guided by sequence and structural analysis
Creators: name: Nanyu Han
name: Huabiao Miao
name: Junmei Ding
name: Junjun Li
name: Yuelin Mu
name: Zhou, Junpei
name: Zunxi Huang
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Cancer
subject: Inorganic Chemistry
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Additional file 1: Figure S1. SDS-PAGE analysis of the recombinant xylanases. Lanes 1, 3, 5 and 7 correspond to purified XynCDBFV, N207A, G208S, and A210S from E. coli BL21 (DE3), respectively; lanes 2, 4, 6 and 8 correspond to expressed XynCDBFV, N207A, G208S, and A210S, respectively; lane 9 corresponds to control cell (harboring empty pEasy-E2 vector); lane M corresponds to standard protein molecular mass markers.
Psammophis zambiensis Hughes & Wade 2002
Creators: name: Conradie, Werner
name: Branch, William R.
name: Watson, Gillian
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Reptilia
Squamata
Colubridae
Psammophis
Psammophis zambiensis

description: Psammophis zambiensis Hughes & Wade, 2002
Bulletin of the Natural History Museum London (Zoology), 68(2):75; Figs. 1–3.
Paratypes: PEM R967 (formerly PEM 1438 /12); Mporokoso, northern Zambia; collector unknown, June 1943. Remarks: Damaged posterior ventral scales, otherwise in fair condition.
description: Published as part of Conradie, Werner, Branch, William R. & Watson, Gillian, 2019, Type specimens in the Port Elizabeth Museum, South Africa, including the historically important Albany Museum collection. Part 2: Reptiles (Squamata), pp. 1-45 in Zootaxa 4576 (1) on page 31, DOI: 10.11646/zootaxa.4576.1.1, http://zenodo.org/record/2624562
Penaeus schmitti Burkenroad 1936
Creators: name: Poupin, Joseph
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Penaeidae
Penaeus
Penaeus schmitti

description: Penaeus schmitti Burkenroad, 1936
Penaeus schmitti – Bullis & Thompson 1959: 7, off French Guiana region. — Holthuis 1959a: 61, Suriname. — Takeda 1983: 35, Suriname, French Guiana [16–35 m]. — D’Incao 1998: 313, Brazil Amapá. — Le Loeuff & Cosel 2000: 25, annex 1, French Guiana. — Tricart & Foubert 2000: tab. 1, French Guiana [list].
Penaeus (Litopenaeus) schmitti – Pérez Farfante 1969: 488, Guyana, Suriname [“appear to be scarce in the shallow waters of Guyana, Surinam, and French Guiana, where only small quantities are caught”].
Litopenaeus schmitti – Tavares 2002b: 274, Brazil Amapá.
Distribution/Habitat
WA; marine; 1– 37 m.
description: Published as part of Poupin, Joseph, 2024, A documented checklist of the Crustacea (Stomatopoda, Decapoda) of the southern Guianas (Guyana, Suriname, French Guiana, Brazil Amapá), pp. 1-197 in European Journal of Taxonomy 954 (1) on pages 28-29, DOI: 10.5852/ejt.2024.954.2653, http://zenodo.org/record/13734759
Penaeus subtilis
Creators: name: Poupin, Joseph
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Penaeidae
Penaeus
Penaeus subtilis

description: Penaeus subtilis (Pérez Farfante, 1967)
Penaeus aztecus subtilis Pérez Farfante, 1967: 87, Guyana, Suriname, French Guiana, Brazil Amapá.
Penaeus subtilis – Takeda 1983: 36, Suriname, French Guiana [21–90 m]. — D’Incao 1998: 314, Brazil Amapá. — Le Loeuff & Cosel 2000: 25, annex 1, French Guiana. — Corbari et al. 2015: 165–167, French Guiana [7 lots, e.g., http://coldb.mnhn.fr/catalognumber/mnhn/iu/2013-2414].
Farfantepenaeus subtilis – Silva et al. 2002a: 16, Brazil Amapá [75 m]; 2020: tab. 1, Brazil Amapá. — Coelho et al. 2006: tab. 1, Brazil Amapá. — Tavares & Gusmão 2016: 507, French Guiana [R/V Oregon II, May 1969, 66 m]. — Cintra et al. 2017: tabs 1–6, Brazil Amapá [by-catch of shrimp fisheries, 27–47 m].
Distribution/Habitat
WA; marine; 1– 192 m.
description: Published as part of Poupin, Joseph, 2024, A documented checklist of the Crustacea (Stomatopoda, Decapoda) of the southern Guianas (Guyana, Suriname, French Guiana, Brazil Amapá), pp. 1-197 in European Journal of Taxonomy 954 (1) on page 29, DOI: 10.5852/ejt.2024.954.2653, http://zenodo.org/record/13734759
Atheris mabuensis Branch & Bayliss 2009
Creators: name: Conradie, Werner
name: Branch, William R.
name: Watson, Gillian
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Reptilia
Squamata
Viperidae
Atheris
Atheris mabuensis

description: Atheris mabuensis Branch & Bayliss, 2009
Zootaxa, 2113:44; Figs. 2–7.
Holotype: PEM R17901; main forest camp, Mount Mabu (16°17’12”S, 36°24’14”E; 1000 m a.s.l.), Mozambique; local hunter, 20 October 2008.
Paratypes (3): a) PEM R17902; same locality as holotype; T. Timberlake, 20 October 2008. b) PEM R17903; same locality as holotype; J. Bayliss, 20 October 2008. c) PEM R17904; Khara Forest (lower end on Manho Forest) (15°24’39.9”S, 37°02’16.5”E; 1550 m a.s.l.), Mount Namuli, Zambezia Province, Mozambique; C. Congdon, 20 November 2008.
Remarks. All specimens with a mid-ventral incision. One paratype (PEM R1902) is badly preserved with four ventral incisions. Menegon et al. (2014) provided genetic sequences for this species (see Table 2).
description: Published as part of Conradie, Werner, Branch, William R. & Watson, Gillian, 2019, Type specimens in the Port Elizabeth Museum, South Africa, including the historically important Albany Museum collection. Part 2: Reptiles (Squamata), pp. 1-45 in Zootaxa 4576 (1) on pages 31-32, DOI: 10.11646/zootaxa.4576.1.1, http://zenodo.org/record/2624562
MOESM6 of A bacterial negative transcription regulator binding on an inverted repeat in the promoter for epothilone biosynthesis
Creators: name: Yue, Xin-Jing
name: Cui, Xiao-Wen
name: Zhang, Zheng
name: Peng, Ran
name: Zhang, Peng
name: Li, Zhi-Feng
name: Li, Yue-Zhong
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: Additional file 6: Table S4. Primers used in RT-qPCR.
Optimizing power and efficiency of a single spin heat engine
Creators: name: Majumdar, Rita
name: Chatterjee, Monojit
name: Marathe, Rahul
Publisher: name: arXiv
Year: 2024
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We study the behavior of a single spin in the presence of a time-varying magnetic field utilizing Glauber dynamics. We engineer the system to function as an engine by changing the magnetic field according to specific protocols. Subsequently, we analyze the engine's performance using various protocols and stochastic thermodynamics to compute average values of crucial quantities for quantifying engine performance. In the longtime limit of the engine cycle, we derive exact analytical expressions for work, heat, and efficiency in terms of a generalized protocol. We then analyze the model in terms of optimization of efficiency and power. Additionally, we use different protocols and employ a gradient descent algorithm to best fit those to obtain optimal efficiency and then optimal power for a finite cycle time. All the protocols converge to the piece-wise constant protocol during efficiency optimization. We then explore a more general approach using the variational principle to determine the optimal protocols for optimizing power and efficiency. During the optimization process for both power and efficiency, the net entropy production decreases, which enhances the engine's performance. This approach demonstrates the superior optimization of efficiency and power in this system compared to the gradient descent algorithm.
description: 41 pages, 13 figures
Bitis atropos subsp. unicolor FitzSimons 1959
Creators: name: Conradie, Werner
name: Branch, William R.
name: Watson, Gillian
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Reptilia
Squamata
Viperidae
Bitis
Bitis atropos
Bitis atropos unicolor fitzsimons, 1959

description: Bitis atropos unicolor FitzSimons, 1959
Annals of the Transvaal Museum, 23:409.
Holotype: PEM R8220 (formerly AMG 1251); Witpoort, about 20 miles north of Belfast, Mpumalanga Province, South Africa; Mr. R. Gerhart, date unknown.
Paratypes (3): a) PEM R8219 (formerly AMG 1421) and PEM R8221 (formerly AMG 1402); both with same collection details as holotype. b) PEM R8218 (formerly AMG 1735); Witbooi, Mpumalanga Province, South Africa; Mr. R. Gerhart, date unknown.
Remarks. The labels on the holotype and one paratype read: “Doornkop near Belfast ”, but the locality is listed as “Witpoort, about 20 miles north of Belfast in the description. In the description, FitzSimons (1959: 409) only lists the holotype (AMG 1251) and two paratypes (AMG 1402 & TMP 5906), under the heading “Types and refers to the other two (AMG 1421 & 1735) as additional material. Later he refers to all the material as paratypes under the measurements table (FitzSimons 1959: 409). We thus regard all the material as being types. Under ‘Types’ he refers to one paratype as ‘TM 5906’, but then as ‘AM 5906’ under measurements. This is in error as the original TMP specimen labels reads ‘TM 5906 previously AMG 1049’ and was donated to TMP by AMG. AMG 1421 is unaccounted for in the PEM. All specimens are in good condition.
description: Published as part of Conradie, Werner, Branch, William R. & Watson, Gillian, 2019, Type specimens in the Port Elizabeth Museum, South Africa, including the historically important Albany Museum collection. Part 2: Reptiles (Squamata), pp. 1-45 in Zootaxa 4576 (1) on page 32, DOI: 10.11646/zootaxa.4576.1.1, http://zenodo.org/record/2624562
MOESM5 of A bacterial negative transcription regulator binding on an inverted repeat in the promoter for epothilone biosynthesis
Creators: name: Yue, Xin-Jing
name: Cui, Xiao-Wen
name: Zhang, Zheng
name: Peng, Ran
name: Zhang, Peng
name: Li, Zhi-Feng
name: Li, Yue-Zhong
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Additional file 5: Table S3. Primers used in construction of vectors and mutant strains.