cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 2 of Mitochondrial genome sequencing, mapping, and assembly benchmarking for Culicoides species (Diptera: Ceratopogonidae)
Creators: name: Milián-García, Yoamel
name: Hempel, Christopher A.
name: Janke, Lauren A. A.
name: Young, Robert G.
name: Furukawa-Stoffer, Tara
name: Ambagala, Aruna
name: Steinke, Dirk
name: Hanner, Robert H.
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2: Supplementary Table S2. MITOS2 annotations obtained for each mitogenome generated in the present study, including gene names, start and stop positions, strand, length of the genes in terms of nucleotides, and start/stop codons for the protein-coding genes (PCGs).
Equilibration in one-dimensional quantum hydrodynamic systems
Creators: name: Sotiriadis, Spyros
Publisher: name: arXiv
Year: 2016
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Quantum Gases (cond-mat.quant-gas)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: We study quench dynamics and equilibration in one-dimensional quantum hydrodynamics, which provides effective descriptions of the density and velocity fields in gapless quantum gases. We show that the information content of the large time steady state is inherently connected to the presence of ballistically moving localised excitations. When such excitations are present, the system retains memory of initial correlations up to infinite times, thus evading decoherence. We demonstrate this connection in the context of the Luttinger model, the simplest quantum hydrodynamic model, and in the quantum KdV equation. In the standard Luttinger model, memory of all initial correlations is preserved throughout the time evolution up to infinitely large times, as a result of the purely ballistic dynamics. However nonlinear dispersion or interactions, when separately present, lead to spreading and delocalisation that suppress the above effect by eliminating the memory of non-Gaussian correlations. We show that, for any initial state that satisfies sufficient clustering of correlations, the steady state is Gaussian in terms of the bosonised or fermionised fields in the dispersive or interacting case respectively. On the other hand, when dispersion and interaction are simultaneously present, a semiclassical approximation suggests that localisation is restored as the two effects compensate each other and solitary waves are formed. Solitary waves, or simply solitons, are experimentally observed in quantum gases and theoretically predicted based on semiclassical approaches, but the question of their stability at the quantum level remains to a large extent an open problem. We give a general overview on the subject and discuss the relevance of our findings to general out of equilibrium problems.
description: Invited contribution to the special issue of J. Phys. A: "John Cardy's scale-invariant journey in low dimensions: a special issue for his 70th birthday" (v2: improved presentation / as published)
Additional file 3 of Mitochondrial genome sequencing, mapping, and assembly benchmarking for Culicoides species (Diptera: Ceratopogonidae)
Creators: name: Milián-García, Yoamel
name: Hempel, Christopher A.
name: Janke, Lauren A. A.
name: Young, Robert G.
name: Furukawa-Stoffer, Tara
name: Ambagala, Aruna
name: Steinke, Dirk
name: Hanner, Robert H.
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3: Supplementary Figure S1. Bos taurus mitogenome recovered from Culicoides biguttatus. A. Reference mitogenome for Bos taurus (NC_006853) and B. Bos taurus mitogenome generated from C. biguttatus_G04 containing blood meal. PCGs, rRNA, and tRNA are indicated in green, brown, and orange. The control region (D-loop) is noted in blue.
Faster Subgradient Methods for Functions with Hölderian Growth
Creators: name: Johnstone, Patrick R.
name: Moulin, Pierre
Publisher: name: arXiv
Year: 2017
Subjects: subject: Optimization and Control (math.OC)
subject: Machine Learning (cs.LG)
subject: Numerical Analysis (math.NA)
subject: FOS: Mathematics
subject: FOS: Computer and information sciences

description: The purpose of this manuscript is to derive new convergence results for several subgradient methods applied to minimizing nonsmooth convex functions with Hölderian growth. The growth condition is satisfied in many applications and includes functions with quadratic growth and weakly sharp minima as special cases. To this end there are three main contributions. First, for a constant and sufficiently small stepsize, we show that the subgradient method achieves linear convergence up to a certain region including the optimal set, with error of the order of the stepsize. Second, if appropriate problem parameters are known, we derive a decaying stepsize which obtains a much faster convergence rate than is suggested by the classical $O(1/\sqrt{k})$ result for the subgradient method. Thirdly we develop a novel "descending stairs" stepsize which obtains this faster convergence rate and also obtains linear convergence for the special case of weakly sharp functions. We also develop an adaptive variant of the "descending stairs" stepsize which achieves the same convergence rate without requiring an error bound constant which is difficult to estimate in practice.
description: 50 pages. First revised version (under submission to Math Programming)
Moore's law will ensure the transition to the third stage of the 4th stage of human evolution "digital philosophy"
Creators: name: Smetana, Vladimir V.
Publisher: name: figshare
Year: 2023
Subjects: classificationCode: 500312
subject: Philosophy of cognition

description: The real world is full of digital solutions and digital intelligence is a logical continuation of scientific and technological progress, confirmed by empirical observations in Moore's law. In conditions when the use of artificial intelligence and robots are becoming everyday practice, one can see the prerequisites for the formation of the concept of the 4th stage of human evolution, which is a logical continuation of A. Comte's theory of the 3 stages of human evolution proposed by him in the 19th century: theological, metaphysical and scientific/positive ("positive philosophy"). The concept of the 4th stage of human evolution proposed by the author of the article involves 3 stages of implementation: digital intelligence helps humanity, digital intelligence controls humanity, and digital intelligence controls the posthuman and robots without human intervention. If the implementation of the first two stages of the 4th stage of human evolution is confirmed at the present time, then the 3rd stage, when "digital intelligence controls cyborgs and robots without human participation" can be considered futurological and can be assumed on some stable patterns, including Moore's law, in which the computing power of microprocessors has doubled every 2 years since the 1960s, which will significantly increase the amount of data and the complexity of digital (artificial) intelligence algorithms.
Additional file 4 of Mitochondrial genome sequencing, mapping, and assembly benchmarking for Culicoides species (Diptera: Ceratopogonidae)
Creators: name: Milián-García, Yoamel
name: Hempel, Christopher A.
name: Janke, Lauren A. A.
name: Young, Robert G.
name: Furukawa-Stoffer, Tara
name: Ambagala, Aruna
name: Steinke, Dirk
name: Hanner, Robert H.
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 4: Supplementary Figure S2. Bayesian reconstruction of the relationship among Culicoides mitogenomes generated up to date, including current haplotypes. A. Blue square indicates C. biguttatus haplotypes mapped against C. arakawae. B. The red square indicates C. biguttatus haplotypes mapped against C. sonorensis_Scaffold710 using the same mapper (Bowtie2). Notice the switch in position of C. biguttatus depending on the reference mitogenome used. The numbers over the nodes indicate posterior probability support. Aedes aegypti (GenBank accession number NC_035159.1) represents the outgroup.
Additional file 5 of Mitochondrial genome sequencing, mapping, and assembly benchmarking for Culicoides species (Diptera: Ceratopogonidae)
Creators: name: Milián-García, Yoamel
name: Hempel, Christopher A.
name: Janke, Lauren A. A.
name: Young, Robert G.
name: Furukawa-Stoffer, Tara
name: Ambagala, Aruna
name: Steinke, Dirk
name: Hanner, Robert H.
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 5: Supplementary Figure S3. Heat map representing pairwise p genetic distances among Culicoides mitogenomes haplotypes available up to date.
Additional file 1 of Advancing behavioral interventions for African American/Black and Latino persons living with HIV using a new conceptual model that integrates critical race theory, harm reduction, and self-determination theory: a qualitative exploratory study
Creators: name: Gwadz, Marya
name: Cluesman, Sabrina R.
name: Freeman, Robert
name: Collins, Linda M.
name: Dorsen, Caroline
name: Hawkins, Robert L.
name: Cleland, Charles M.
name: Wilton, Leo
name: Ritchie, Amanda S.
name: Torbjornsen, Karen
name: Leonard, Noelle R.
name: Martinez, Belkis Y.
name: Silverman, Elizabeth
name: Israel, Khadija
name: Kutnick, Alexandra
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1.
Additional file 1 of Cost-effectiveness of integrated disease management for high risk, exacerbation prone, patients with chronic obstructive pulmonary disease in a primary care setting
Creators: name: Scarffe, Andrew D.
name: Licskai, Christopher J.
name: Ferrone, Madonna
name: Brand, Kevin
name: Thavorn, Kednapa
name: Coyle, Doug
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Table S1. Baseline Demographic Information. Table S2. Summary of Findings for Scenario Analysis. Table S5. Regression Coefficients for CAT to EQ-5D Conversion. Table S6. EQ-5D Estimates that Inform the Full Model. Figure S1. Scenario Analysis Cost Effectiveness Acceptability Curve. Figure S2. Residual Plot Informed by the Logistic Model. Figure S3. Q-Q Plots of Costs & Effects informed by the Logistic Model
“It’s that Internal Struggle”: Grenfell Residents Lived Experience of Psychological Distress, Post-Fire, 14-06-17. An Interpretative Phenomenological Analysis.
Creators: name: Sennik, Bhavna
Publisher: name: University of East London
Year: 2022
Subjects: subject: Race
subject: Racialisation
subject: Grenfell
subject: Grenfell Tower
subject: Disasters
subject: Psychology
subject: FOS: Psychology

description: The Grenfell Tower Fire occurred on June 14th, 2017, leaving residents displaced, shocked, and many dead. The tower, owned by the Royal Borough of Kensington and Chelsea (RBKC), had no smoke alarms, sprinklers, or fire exits. The fire engulfed the morality of social reason, caused psychological and physical injury, and has weathered but not stopped brave residents and community members. The racialisation of Grenfell Tower can be used to understand Grenfell Residents as a racialised populace. This brings attention to societal structural inequalities that hold these praxes together. In terms of Grenfell Residents, there have been reported elevated levels of PTSD and suicidal rates in conjunction with low engagement with therapeutic services. Research conducted so far in the community has highlighted non-culturally diverse interventions, which brings to focus how psychological distress is conceptualised for racialised populaces, such as Grenfell Residents. The current evidence base on psychological distress reflects empirical evidence and vague definition, generally and within post-disaster research. Amongst racialised populaces, Eurocentric ideas of psychological distress exist. Thus, the need for further exploration. Therefore, semi-structured interviews were conducted with six participants. Interpretative Phenomenological Analysis was used to analyse data. The analysis bounded the research through a Counselling Psychology lens, paying attention to social justice and humanistic values in the field. This produced four superordinate themes and eleven subordinate themes: (1) “The Double-Edged Sword”: Grenfell as Meaning (2) “Mummy’s Dying Inside”: The Internalisation Of Suffering; (3) “Your Purpose In Life Is Still There”: The Internal Becoming The External; (4) “The Warpath Of Understanding The System”: External Wound. The study aimed to build an inclusive, expansive understanding that may be used to improve intervention and conceptualisation(s) of psychological distress in the future. Results from this study can assist with the re/de-construction of psychological distress and intervention for medical, political, social, psychological and community understanding.
Additional file 1 of The CHAMP-study: the CHemopreventive effect of lithium in familial AdenoMatous Polyposis; study protocol of a phase II trial
Creators: name: Linssen, Jasmijn D. G.
name: van Neerven, Sanne M.
name: Aelvoet, Arthur S.
name: Elbers, Clara C.
name: Vermeulen, Louis
name: Dekker, Evelien
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Cancer

description: Additional file 1. Lithium side effect questionnaire
Additional file 2 of The CHAMP-study: the CHemopreventive effect of lithium in familial AdenoMatous Polyposis; study protocol of a phase II trial
Creators: name: Linssen, Jasmijn D. G.
name: van Neerven, Sanne M.
name: Aelvoet, Arthur S.
name: Elbers, Clara C.
name: Vermeulen, Louis
name: Dekker, Evelien
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Cancer

description: Additional file 2. Schedule of activities
Additional file 1 of Patient stratification based on urea cycle metabolism for exploration of combination immunotherapy in colon cancer
Creators: name: Zhao, Zirui
name: Liu, Haohan
name: Fang, Deliang
name: Zhou, Xingyu
name: Zhao, Shaoji
name: Zhang, Chaoyue
name: Ye, Jinning
name: Xu, Jianbo
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer

description: Additional file 1: Appendix D1. The correlation of 14 UC metabolism-related geneexpression with immune infiltration level in colon cancer.
Additional file 2 of Patient stratification based on urea cycle metabolism for exploration of combination immunotherapy in colon cancer
Creators: name: Zhao, Zirui
name: Liu, Haohan
name: Fang, Deliang
name: Zhou, Xingyu
name: Zhao, Shaoji
name: Zhang, Chaoyue
name: Ye, Jinning
name: Xu, Jianbo
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer

description: Additional file 2: Appendix D2. The immune infiltrates inclusters in the TCGA cohort.
The Rare and Atypical Diabetes Network (RADIANT) Study: Design and Early Results.
Creators: name: RADIANT Study Group
Publisher: name: American Diabetes Association
Year: 2023
Subjects: RADIANT Study Group

description: OBJECTIVE: The Rare and Atypical Diabetes Network (RADIANT) will perform a study of individuals and, if deemed informative, a study of their family members with uncharacterized forms of diabetes. RESEARCH DESIGN AND METHODS: The protocol includes genomic (whole-genome [WGS], RNA, and mitochondrial sequencing), phenotypic (vital signs, biometric measurements, questionnaires, and photography), metabolomics, and metabolic assessments. RESULTS: Among 122 with WGS results of 878 enrolled individuals, a likely pathogenic variant in a known diabetes monogenic gene was found in 3 (2.5%), and six new monogenic variants have been identified in the SMAD5, PTPMT1, INS, NFKB1, IGF1R, and PAX6 genes. Frequent phenotypic clusters are lean type 2 diabetes, autoantibody-negative and insulin-deficient diabetes, lipodystrophic diabetes, and new forms of possible monogenic or oligogenic diabetes. CONCLUSIONS: The analyses will lead to improved means of atypical diabetes identification. Genetic sequencing can identify new variants, and metabolomics and transcriptomics analysis can identify novel mechanisms and biomarkers for atypical disease.
Sensitivity Characterisation of a Parametric Transducer for Gravitational Wave Detection Through Optical Spring Effect
Creators: name: Carvalho, N. C.
name: Aguiar, O. D.
name: Bourhill, J.
name: Tobar, M. E.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Instrumentation and Detectors (physics.ins-det)
subject: FOS: Physical sciences

description: We present the characterisation of the most recent parametric transducers designed to enhance the Mario Schenberg Gravitational Wave Detector sensitivity. The transducer is composed of a microwave re-entrant cavity that attaches to the gravitational wave antenna via a rigid spring. It functions as a three-mode mass-spring system; motion of the spherical antenna couples to a 50 $μm$ thick membrane, which converts its mechanical motion into a frequency shift of the cavity resonance. Through the optical spring effect, the microwave transducer frequency-displacement sensitivity was measured to be 726 $MHz/μ$m at 4 K. The spherical antenna detection sensitivity is determined analytically using the transducer amplification gain and equivalent displacement noise in the test setup, which are 5.5 $\times$ 10$^{11} V/m$ and $1.8 \times 10^{-19} m\sqrt{Hz}^{-1}$, respectively.
Cheminformatics Microservice - Performance test results
Creators: name: Nainala, Venkata
name: Rajan, Kohulan
name: Sharma, Nisha
Publisher: name: Zenodo
Year: 2023

description: Performance testing: Latency distribution and success rate at each request rate Ramping Load: To determine the maximum throughput the Cheminformatics Microservice (Intel(R) Xeon(R) Gold 6226R CPU @ 2.90GHz and 16GB of RAM) can handle, we used the Vegeta (https://github.com/tsenart/vegeta) tool to add load in small increments and measure the delivered throughput until a limit is reached. The results are then graphed to show the scalability profile. Cheminformatics REST API to create 2D coordinates from SMILES endpoint is chosen as the test request, and the scalability profiles are generated for requests with SMILES starting from 6 heavy atom count to 125 heavy atoms (randomly sampled from Coconut database). The scalability profiles are then studied visually to understand the server performance.
Additional file 3 of Patient stratification based on urea cycle metabolism for exploration of combination immunotherapy in colon cancer
Creators: name: Zhao, Zirui
name: Liu, Haohan
name: Fang, Deliang
name: Zhou, Xingyu
name: Zhao, Shaoji
name: Zhang, Chaoyue
name: Ye, Jinning
name: Xu, Jianbo
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer

description: Additional file 3: Appendix D3. The correlation of nine UCmetabolism-related gene expression with TMB in diverse cancer types.
Adaptive Filtering to Enhance Noise Immunity of Impedance and Admittance Spectroscopy: Comparison with Fourier Transformation
Creators: name: Stupin, Daniil D.
name: Koniakhin, Sergei V.
name: Verlov, Nikolay A.
name: Dubina, Michael V.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Data Analysis, Statistics and Probability (physics.data-an)
subject: FOS: Physical sciences

description: The time-domain technique for impedance spectroscopy consists of computing the excitation voltage and current response Fourier images by fast or discrete Fourier transformation and calculating their relation. Here we propose an alternative method for excitation voltage and current response processing for deriving a system impedance spectrum based on a fast and flexible adaptive filtering method. We show the equivalence between the problem of adaptive filter learning and deriving the system impedance spectrum. To be specific, we express the impedance via the adaptive filter weight coefficients. The noise-canceling property of adaptive filtering is also justified. Using the RLC circuit as a model system, we experimentally show that adaptive filtering yields correct admittance spectra and elements ratings in the high-noise conditions when the Fourier-transform technique fails. Providing the additional sensitivity of impedance spectroscopy, adaptive filtering can be applied to otherwise impossible-to-interpret time-domain impedance data. The advantages of adaptive filtering are justified with practical living-cell impedance measurements.
description: 5 figures, 10 equations, 1 table. In this version the bio-application example was added
The large D black hole dynamics in AdS/dS backgrounds
Creators: name: Bhattacharyya, Sayantani
name: Biswas, Parthajit
name: Chakrabarty, Bidisha
name: Dandekar, Yogesh
name: Dinda, Anirban
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We have constructed a class of perturbative dynamical black hole solutions in presence of cosmological constant. We have done our calculation in large number of dimensions. The inverse power of dimension has been used as the perturbation parameter and our calculation is valid upto the first subleading order. The solutions are in one to one correspondence with a dynamical membrane and a velocity field embedded in the asymptotic geometry. Our method is manifestly covariant with respect to the asymptotic geometry. One single calculation and the same universal result works for both dS and AdS geometry or in case of AdS for both global AdS and Poincare patch. We have checked our final answer with various known exact solutions and the known spectrum of Quasi Normal modes in AdS/dS.
description: 74 pages. v2: Minor changes, typos corrected
Additional file 4 of Patient stratification based on urea cycle metabolism for exploration of combination immunotherapy in colon cancer
Creators: name: Zhao, Zirui
name: Liu, Haohan
name: Fang, Deliang
name: Zhou, Xingyu
name: Zhao, Shaoji
name: Zhang, Chaoyue
name: Ye, Jinning
name: Xu, Jianbo
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer

description: Additional file 4: Appendix S1-S3. Figure S1. The association of intersection prognostic genes with immunity. (A) The correlation of 14 UC metabolism-related genes expression level with immune infiltration level in colon cancer. (B) Comparisons of immune infiltration level among samples with copy number alteration and the normal of 14 UC metabolism-related genes. Figure S2. The consensus clustering analysis of clusters, GSEA of the Cluster 1, and the t-SNE and 3D PCA of risk groups in the TCGA cohort. (A) The consensus matrix legend and the other consensus matrixes of clusters in the TCGA cohort. (B) The CDF plots and the item tracking plot of consensus clustering matrix in the external validation cohort. (C) The GSEA of cluster 1 colon cancer in the TCGA cohort. (D) (E) The t-SNE and 3D PCA of risk groups in the TCGA cohort. Figure S3. Immunohistochemistry of four genes in normal colon tissue and cancerous colon tissue, respectively. (A) The protein expression of upregulated genes (CDKN2A and CLCNKB) in normal colon tissue and cancerous colon tissue respectively. The URL of CDKN2A was https://www.proteinatlas.org/ENSG00000147889-CDKN2A/tissue/colon#img , https://www.proteinatlas.org/ENSG00000147889-CDKN2A/pathology/colorectal+cancer#img . The URL of CLCNKB was https://www.proteinatlas.org/ENSG00000184908-CLCNKB/tissue/colon#img and https://www.proteinatlas.org/ENSG00000184908-CLCNKB/pathology/colorectal+cancer#img . (B) The protein expression of downregulated genes (NAT2 and NOS2) in normal colon tissue and cancerous colon tissue respectively. The URL of NAT2 was https://www.proteinatlas.org/ENSG00000156006-NAT2/tissue/colon#img and https://www.proteinatlas.org/ENSG00000156006-NAT2/pathology/colorectal+cancer#img . The URL of NOS2 was https://www.proteinatlas.org/ENSG00000007171-NOS2/tissue/colon#img and https://www.proteinatlas.org/ENSG00000007171-NOS2/pathology/colorectal+cancer#img .
What Works for You Might Not Work for Me: Consequences of IPT, Feedback Orientation, and Feedback Environment on Performance Management Effectiveness
Creators: name: Burton, Bobbie
Publisher: name: IUPUI University Library
Year: 2023
Subjects: Performance Management
Feedback Environment
Implicit Person Theory
Feedback Orientation
Performance Management Behaviors
Employee Reactions

description: Indiana University-Purdue University Indianapolis (IUPUI)
description: Despite its status as a commonly used and seemingly vital talent management system, performance management has received an abundance of criticism surrounding its effectiveness and utility in organizations. Existing deficiencies in performance management are largely attributed to gaps in its strategy and implementation, with researchers arguing that organizations need to spend more effort supporting personnel engagement in informal, “everyday” performance management behaviors to drive performance. The present study sought to expand on existing performance management research by investigating: 1) how supervisor engagement in informal performance management behaviors influences employee perceptions of overall performance management and 2) how employee feedback orientation and implicit person theory potentially alter those perceptions. The hypothesized model was tested using an online survey sent through Prolific academic to a random sample of 351 full-time United States employees. A series of hierarchical regressions revealed that employee perceptions of performance management were positively predicted by supervisor engagement in informal performance management behaviors. However, employee feedback orientation and implicit person theory were not found to significantly moderate these effects. The present study contributes to performance management literature by examining the degree to which informal supervisor performance management behaviors shape employee reactions to performance management. Implications, limitations, and directions for future research are discussed.
Additional file 5 of Patient stratification based on urea cycle metabolism for exploration of combination immunotherapy in colon cancer
Creators: name: Zhao, Zirui
name: Liu, Haohan
name: Fang, Deliang
name: Zhou, Xingyu
name: Zhao, Shaoji
name: Zhang, Chaoyue
name: Ye, Jinning
name: Xu, Jianbo
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer

description: Additional file 5: Appendix T1. The urea cyclemetabolism-related genes.
Band-gap tuning and optical response of two-dimensional Si$_x$C$_{1-x}$: A first-principles real space study of disordered 2D materials
Creators: name: Sadhukhan, Banasree
name: Singh, Prashant
name: Nayak, Arabinda
name: Datta, Sujoy
name: Johnson, Duane D.
name: Mookerjee, Abhijit
Publisher: name: arXiv
Year: 2016
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We present a real-space formulation for calculating the electronic structure and optical conductivity of such random alloys based on the Kubo-Greenwood formalism interfaced with the augmented space recursion (ASR) [A. Mookerjee, J. Phys. C: Solid State Phys. {\bf 6}, 1340 (1973)] formulated with the Tight-binding Linear Muffin-tin Orbitals (TB-LMTO) basis with van Leeuwen-Baerends corrected exchange (vLB) [Singh et al, Phys. Rev B {\bf 93}, 085204, (2016)]. This approach has been used to quantitatively analyze the effect of chemical disorder on the configuration averaged electronic properties and optical response of 2D honeycomb siliphene Si$_{x}$C$_{1-x}$ beyond the usual Dirac-cone approximation. We predicted the quantitative effect of disorder on both the electronic-structure and optical response over a wide energy range, and the results discussed in the light of the available experimental and other theoretical data. Our proposed formalism may open up a facile way for planned band gap engineering in opto-electronic applications.
description: 9 pages, 4 figures
Additional file 6 of Patient stratification based on urea cycle metabolism for exploration of combination immunotherapy in colon cancer
Creators: name: Zhao, Zirui
name: Liu, Haohan
name: Fang, Deliang
name: Zhou, Xingyu
name: Zhao, Shaoji
name: Zhang, Chaoyue
name: Ye, Jinning
name: Xu, Jianbo
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer

description: Additional file 6: Appendix T2. The survival analysis ofprognostic genes on HPA for validation.
Radial Subgradient Method
Creators: name: Grimmer, Benjamin
Publisher: name: arXiv
Year: 2017
Subjects: subject: Optimization and Control (math.OC)
subject: FOS: Mathematics
subject: 90C25, 90C52

description: We present a subgradient method for minimizing non-smooth, non-Lipschitz convex optimization problems. The only structure assumed is that a strictly feasible point is known. We extend the work of Renegar [5] by taking a different perspective, leading to an algorithm which is conceptually more natural, has notably improved convergence rates, and for which the analysis is surprisingly simple. At each iteration, the algorithm takes a subgradient step and then performs a line search to move radially towards (or away from) the known feasible point. Our convergence results have striking similarities to those of traditional methods that require Lipschitz continuity. Costly orthogonal projections typical of subgradient methods are entirely avoided.
description: 10 pages; Update 7/24/2017: Changed title from "Radial Subgradient Descent" to "Radial Subgradient Method". Updated the introduction
Quantum caustics in resonance fluorescence trajectories
Creators: name: Naghiloo, M.
name: Tan, D.
name: Harrington, P. M.
name: Lewalle, P.
name: Jordan, A. N.
name: Murch, K. W.
Publisher: name: arXiv
Year: 2016
Subjects: subject: Quantum Physics (quant-ph)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Atomic Physics (physics.atom-ph)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We employ phase-sensitive amplification to perform homodyne detection of the resonance fluorescence from a driven superconducting artificial atom. Entanglement between the emitter and its fluorescence allows us to track the individual quantum state trajectories of the emitter conditioned on the outcomes of the field measurements. We analyze the ensemble properties of these trajectories by considering trajectories that connect specific initial and final states. By applying the stochastic path integral formalism, we calculate equations-of-motion for the most likely path between two quantum states and compare these predicted paths to experimental data. Drawing on the mathematical similarity between the action formalism of the most likely quantum paths and ray optics we study the emergence of caustics in quantum trajectories---places where multiple extrema in the stochastic action occur. We observe such multiple most likely paths in experimental data and find these paths to be in reasonable quantitative agreement with theoretical calculations.
description: 12 pages, 10 figures
Turbulent thermal convection over rough plates with varying roughness geometries
Creators: name: Xie, Yi-Chao
name: Xia, Ke-Qing
Publisher: name: arXiv
Year: 2017
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: We present a systematic investigation of the effects of roughness geometry on turbulent Rayleigh-Bénard convection (RBC) over rough plates with pyramid-shaped and periodically distributed roughness elements. Using a parameter $λ$ defined as the height of a roughness element over its base width, the heat transport, the flow dynamics and local temperatures are measured for the Rayleigh number range $7.50\times 10^{7} \leq Ra\leq 1.31\times 10^{11}$, and the Prandtl number $Pr$ from 3.57 to 23.34 at four values of $λ$. It is found that the heat transport scaling, i.e. $Nu\sim Ra^α$ where $Nu$ is the Nusselt number, may be classified into three regimes. In Regime I, the system is in a dynamically smooth state. The heat transport scaling is the same as that in a smooth cell. In Regimes II and III, the heat transport enhances. When $λ$ is increased from 0.5 to 4.0, $α$ increases from 0.36 to 0.59 in Regime II, and it increases from 0.30 to 0.50 in Regime III. The experiment demonstrates the heat transport scaling in turbulent RBC can be manipulated using $λ$. Previous studies suggest that the transition from Regime I to Regime II, occurs when the thermal boundary layer (BL) thickness becomes smaller than the roughness height $h$. Direct measurements of the viscous BL in the present study suggest that the transition from Regime II to Regime III is likely a result of the viscous BL thickness becoming smaller $h$. The scaling exponent of the Reynolds number $Re$ vs. $Ra$ changes from 0.471 to 0.551 when $λ$ is increased from 0.5 to 4.0. It is also found that increasing $λ$ increases the clustering of thermal plumes which effectively increases the plumes lifetime that are ultimately responsible for the enhanced heat transport.
description: 27 pages, 19 figures
Simultaneous monitoring of fluxonium qubits in a waveguide
Creators: name: Kou, A.
name: Smith, W. C.
name: Vool, U.
name: Pop, I. M.
name: Sliwa, K. M.
name: Hatridge, M.
name: Frunzio, L.
name: Devoret, M. H.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Most quantum-error correcting codes assume that the decoherence of each physical qubit is independent of the decoherence of any other physical qubit. We can test the validity of this assumption in an experimental setup where a microwave feedline couples to multiple qubits by examining correlations between the qubits. Here, we investigate the correlations between fluxonium qubits located in a single waveguide. Despite being in a wide-bandwidth electromagnetic environment, the qubits have measured relaxation times in excess of 100 us. We use cascaded Josephson parametric amplifiers to measure the quantum jumps of two fluxonium qubits simultaneously. No correlations are observed between the relaxation times of the two fluxonium qubits, which indicates that the sources of relaxation are local to each qubit. Our architecture can easily be scaled to monitor larger numbers of qubits.
1 SSO Form on Letterheadb.pdf
Creators: name: McCluskey, John
name: Uchida, Craig
name: Feys, Yinthe
name: Solomon, Shellie
Publisher: name: figshare
Year: 2023
Subjects: Criminology not elsewhere classified

description: This file repository features a series of codebooks and questionnaires for in-person Environment-based SSO (EBSSO), in-person SSO (IPSSO) of police and Video-based SSO of police (VBSSO). 1 SSO Form on Letterheadb.pdf: This features 15 items that Justice and Security Strategies researchers used to collect data regarding physical disorder during EBSSO observation periods.
 2 SSO Social Indicators This form features 6 items capturing social order and disorder indicators for EBSSO observation periods.
 Dai_37455-0006-Questionnaire-Multi.pdf This is a codebook that accompanies Dr. Dai's VBSSO project archived with the ICPSR in the United States.
 LAPD_Full SSO Instrument_Qualtrics.pdf This file is a capture of the qualtrics instrument deployed by the LAPD-PJ researchers for IPSSO study of the impact of body-worn cameras on police behavior.
 Feys_BOSSD_Codebook.pdf This codebook captures the field instructions and coding for the BOSS-D IPSSO project.
Cosmic structure sizes in generic dark energy models
Creators: name: Bhattacharya, Sourav
name: Tomaras, Theodore N
Publisher: name: arXiv
Year: 2017
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: The maximum allowable size of a spherical cosmic structure as a function of its mass is determined by the maximum turn around radius $R_{\rm TA,max}$, the distance from its centre where the attraction on a radial test particle due to the spherical mass is balanced with the repulsion due to the ambient dark energy. In this work, we extend the existing results in several directions. (a) We first show that for $w\neq -1$, the expression for $R_{\rm TA, max}$ found earlier using the cosmological perturbation theory, can be derived using a static geometry as well. (b) In the generic dark energy model with arbitrary time dependent state parameter $w(t)$, taking into account the effect of inhomogeneities upon the dark energy as well, where it is shown that the data constrain $w(t={\rm today})>-2.3$, and (c) in the quintessence and the generalized Chaplygin gas models, both of which are shown to predict structure sizes consistent with observations.
description: v2, 19pp; added references and discussions, improved presentation; accepted in EPJC
Nash and Wardrop equilibria in aggregative games with coupling constraints
Creators: name: Paccagnan, Dario
name: Gentile, Basilio
name: Parise, Francesca
name: Kamgarpour, Maryam
name: Lygeros, John
Publisher: name: arXiv
Year: 2017
Subjects: subject: Systems and Control (eess.SY)
subject: Computer Science and Game Theory (cs.GT)
subject: Optimization and Control (math.OC)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Computer and information sciences
subject: FOS: Mathematics

description: We consider the framework of aggregative games, in which the cost function of each agent depends on his own strategy and on the average population strategy. As first contribution, we investigate the relations between the concepts of Nash and Wardrop equilibrium. By exploiting a characterization of the two equilibria as solutions of variational inequalities, we bound their distance with a decreasing function of the population size. As second contribution, we propose two decentralized algorithms that converge to such equilibria and are capable of coping with constraints coupling the strategies of different agents. Finally, we study the applications of charging of electric vehicles and of route choice on a road network.
description: IEEE Trans. on Automatic Control (Accepted without changes). The first three authors contributed equally
On Mahler's transcendence measure for $e$
Creators: name: Ernvall-Hytönen, Anne-Maria
name: Matala-aho, Tapani
name: Seppälä, Louna
Publisher: name: arXiv
Year: 2017
Subjects: subject: Number Theory (math.NT)
subject: FOS: Mathematics
subject: 11J82, 11J72, 41A21

description: We present a completely explicit transcendence measure for $e$. This is a continuation and an improvement to the works of Borel, Mahler and Hata on the topic. Furthermore, we also prove a transcendence measure for an arbitrary positive integer power of $e$. The results are based on Hermite-Padé approximations and on careful analysis of common factors in the footsteps of Hata.
description: 1 figure
How nonlocal damping reduces plasmon-enhanced fluorescence in ultranarrow gaps
Creators: name: Tserkezis, Christos
name: Mortensen, N. Asger
name: Wubs, Martijn
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: The nonclassical modification of plasmon-assisted fluorescence enhancement is theoretically explored by placing two-level dipole emitters at the narrow gaps encountered in canonical plasmonic architectures, namely dimers and trimers of different metallic nanoparticles. Through detailed simulations, in comparison with appropriate analytical modelling, it is shown that within classical electrodynamics, and for the reduced separations explored here, fluorescence enhancement factors of the order of $10^{5}$ can be achieved, with a divergent behaviour as the particle touching regime is approached. This remarkable prediction is mainly governed by the dramatic increase in excitation rate triggered by the corresponding field enhancement inside the gaps. Nevertheless, once nonclassical corrections are included, the amplification factors decrease by up to two orders of magnitude and a saturation regime for narrower gaps is reached. These nonclassical limitations are demonstrated by simulations based on the generalised nonlocal optical response theory, which accounts in an efficient way not only for nonlocal screening, but also for the enhanced Landau damping near the metal surface. A simple strategy to introduce nonlocal corrections to the analytic solutions is also proposed. It is therefore shown that the nonlocal optical response of the metal imposes more realistic, finite upper bounds to the enhancement feasible with ultrasmall plasmonic cavities, thus providing a theoretical description closer to state of the art experiments.
On Distinguishability of Black Hole Microstates
Creators: name: Bao, Ning
name: Ooguri, Hirosi
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We use the Holevo information to estimate distinguishability of microstates of a black hole in anti-de Sitter space by measurements one can perform on a subregion of a Cauchy surface of the dual conformal field theory. We find that microstates are not distinguishable at all until the subregion reaches a certain size and that perfect distinguishability can be achieved before the subregion covers the entire Cauchy surface. We will compare our results with expectations from the entanglement wedge reconstruction, tensor network models, and the bit threads interpretation of the Ryu-Takayanagi formula.
description: 12 pages, 3 figures, Correction added to section 3 and references added
Hyperon polarization in Heavy-Ion Collisions and gravity-related anomaly
Creators: name: Baznat, Mircea
name: Gudima, Konstantin
name: Sorin, Alexander
name: Teryaev, Oleg
Publisher: name: arXiv
Year: 2017
Subjects: subject: Nuclear Theory (nucl-th)
subject: High Energy Physics - Lattice (hep-lat)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We study the energy dependence of global polarization of $Λ$ hyperons in peripheral $Au-Au$ collisions. We combine the calculation of vorticity and strange chemical potential in the framework of kinetic Quark-Gluon String Model with the anomalous mechanism related to axial vortical effect. The earlier found effect of helicity separation implies the quadrupole structure of longitudinal vorticity. We pay special attention to the temperature dependent contribution related to gravitational anomaly and found that the preliminary RHIC data are compatible with its suppression discovered earlier in lattice calculations. The antihyperons polarization is excessing that of hyperons and the difference is more pronounced at smaller energies.
description: 11 pages, 4 figures; new figures, discussion, references and acknowledgments added
Advancements in Medical Image Processing Techniques: From Computerized Diagnosis to Blockchain
Creators: name: Jabarulla, Mohamed Yaseen
Publisher: name: figshare
Year: 2022
Subjects: Image processing
Computational imaging
Video processing
Computer vision
Active sensing

description: Healthcare providers and researchers are advancing their image-guided interventions and health management system to provide a flexible, efficient, and early diagnosis for patients. Imaging informatics aims to improve the efficiency, accuracy, usability, and reliability of medical imaging services within the healthcare enterprise. In particular, medical imaging is an essential tool used to create a visual representation of a human body for clinical analysis and medical interventions. Medical imaging includes many types of techniques and operations such as image gaining, analysis, artifact elimination, intelligent noise reduction, secure storage, and communication. Therefore, it is important to focus on research related to medical imaging technologies for routine clinical practice that helps doctors to access and interpret medical images accurately. This dissertation focuses on solving three distinct issues related to medical imaging techniques: 1) image analysis, 2) image reconstruction, and 3) image management. Our advanced solutions are based on computer-aided diagnosis, computational imaging, and blockchain. In this thesis, we firstly categorize and review the computer-aided diagnostic (CAD) system according to the five primary stages including data pre-processing, segmentation, feature extraction, feature selection, and classification. The purpose of a CAD system is to process and provide adequate information that helps to analyze ultrasound images for early cancer diagnosis. Secondly, we focus on the image preprocessing stage for reducing multiplicative noise present on ultrasound image using a sparse representation over a learned dictionary. Thirdly, we proposed a POC design for a distributed framework called a patient-centric image management (PCIM) system. PCIM system is a blockchain-based architecture designed to facilitate secured patient-centric access and storage of encrypted medical images within an open distributed network.