cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Two distinct superconducting pairing states divided by the nematic end point in FeSe$_{1-x}$S$_{x}$
Creators: name: Hanaguri, T.
name: Iwaya, K.
name: Kohsaka, Y.
name: Machida, T.
name: Watashige, T.
name: Kasahara, S.
name: Shibauchi, T.
name: Matsuda, Y.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: Unconventional superconductivity often competes or coexists with other electronic orders. In iron-based superconductors, relationship between superconductivity and the nematic state, where the lattice rotational symmetry is spontaneously broken in the electronic states, has been discussed but unclear. Using spectroscopic-imaging scanning tunneling microscopy, we investigate how the band structure and the superconducting gap evolve in FeSe$_{1-x}$S$_x$, as the sulfur substitution suppresses nematicity that eventually diminishes at the nematic end point (NEP) at $x=0.17$. Anisotropic quasiparticle-interference patterns, which represent the nematic band structure, gradually become isotropic with increasing $x$ without detectable anomalies in the band parameters at the NEP. By contrast, the superconducting gap, which is almost intact in the nematic phase, suddenly shrinks as soon as $x$ exceeds the NEP. Our observation implies that the presence or absence of nematicity results in two distinct pairing states, whereas the pairing interaction is insensitive to the strength of nematicity. This provides a clue for understanding the pairing mechanism.
description: 9 pages, 4 figures. Supplementary information is available at http://www.riken.jp/epmrt/Hanaguri/SI/FeSeS_QPI_SI.pdf
Ultra-high Dimensional Multiple Output Learning With Simultaneous Orthogonal Matching Pursuit: Screening Approach
Creators: name: Kolar, Mladen
name: Xing, Eric P.
Publisher: name: Carnegie Mellon University
Year: 2010
Subjects: subject: 170203 Knowledge Representation and Machine Learning
subject: FOS: Psychology

description: We propose a novel application of the Simultaneous Orthogonal Matching Pursuit (SOMP) procedure to perform variable selection in ultra-high dimensional multiple output regression problems, which is the first attempt to utilize multiple outputs to perform fast removal of the irrelevant variables. As our main theoretical contribution, we show that the S-OMP can be used to reduce an ultra-high number of variables to below the sample size, without losing relevant variables. We also provide formal evidence that the modified Bayesian information criterion (BIC) can be used to efficiently select the number of iterations in the S-OMP. Once the number of variables has been reduced to a manageable size, we show that a more computationally demanding procedure can be used to identify the relevant variables for each of the regression outputs. We further provide evidence on the benefit of variable selection using the regression outputs jointly, as opposed to performing variable selection for each output separately. The finite sample performance of the S-OMP has been demonstrated on extensive simulation studies.
Foundations of the Constituent Quark Model
Creators: name: Diakonov, Dmitri
Publisher: name: arXiv
Year: 1996
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: 'Constituent quarks' means massive quarks, in contrast to the nearly massless u,d,s quarks of the QCD lagrangian. The dynamical or constituent masses appear owing to the spontaneous chiral symmetry breaking in QCD. A realistic mechanism of the chiral symmetry breaking is provided by instantons. Therefore, I review the present status of the QCD instanton vacuum, emphasizing the mechanism of chiral symmetry breaking and of the generation of the constitutent quark mass. I end up with the Nambu--Jona-Lasinio-type effective theory to which QCD is reduced at low momenta.
description: Lecture at the International School of Nuclear Physics, September 19 -- 27, 1995, Erice, Italy. 17 p. LaTeX, to be published in the Proceedings
Main code scripts for "Amundsen Sea Circulation Controls Bottom Upwelling and Antarctic Pine Island and Thwaites Ice Shelf Melting"
Creators: name: Park, Taewook
Publisher: name: Zenodo
Year: 2024

description: This folder contains the PyFerret codes (*.jnl files) and Gnuplot codes (*.gp files) used to generate results in the manuscript titled “Amundsen Sea Circulation Controls Bottom Upwelling and Antarctic Pine Island and Thwaites Ice Shelf Melting” in Nature Communications in 2024 by Taewook Park, Nakayama Yoshihiro, SungHyun Nam.

To install PyFerret and its Python module, follow the instructions on the PyFerret GitHub page (NOAA/PMEL) at https://github.com/NOAA-PMEL/PyFerret.

Run “ferret -script Fig1.jnl” in the terminal to create Figure 1.

For Gnuplot, installation details are on its GitHub page at https://github.com/gnuplot/gnuplot.

Run “gnuplot Suppl.Fig3a.gp” in the terminal to produce Supplementary Figure 3a.
The integration and testing of the Mini-EUSO multi-level trigger system
Creators: name: Belov, A.
name: Bertaina, M.
name: Capel, F.
name: Faust, F.
name: Fenu, F.
name: Klimov, P.
name: Mignone, M.
name: Miyamoto, H.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Instrumentation and Detectors (physics.ins-det)
subject: FOS: Physical sciences

description: The Mini-EUSO telescope is designed by the JEM-EUSO Collaboration to observe the UV emission of the Earth from the vantage point of the International Space Station (ISS) in low Earth orbit. The main goal of the mission is to map the Earth in the UV, thus increasing the technological readiness level of future EUSO experiments and to lay the groundwork for the detection of Extreme Energy Cosmic Rays (EECRs) from space. Due to its high time resolution of 2.5 us, Mini-EUSO is capable of detecting a wide range of UV phenomena in the Earth's atmosphere. In order to maximise the scientific return of the mission, it is necessary to implement a multi-level trigger logic for data selection over different timescales. This logic is key to the success of the mission and thus must be thoroughly tested and carefully integrated into the data processing system prior to the launch. This article introduces the motivation behind the trigger design and details the integration and testing of the logic.
description: 24 pages, 11 figures. Accepted for publication in ASR
Two-stage sampled learning theory on distributions
Creators: name: Zoltan  Szabo
name: Gretton, Arthur
name: Poczos, Barnabas
name: Bharath  Sriperumbudur
Publisher: name: Carnegie Mellon University
Year: 2015
Subjects: subject: 170203 Knowledge Representation and Machine Learning
subject: FOS: Psychology

description: We focus on the distribution regression problem: regressing to a real-valued response from a probability distribution. Although there exist a large number of similarity measures between distributions, very little is known about their generalization performance in specific learning tasks. Learning problems formulated on distributions have an inherent two-stage sampled diffi- culty: in practice only samples from sampled distributions are observable, and one has to build an estimate on similarities computed between sets of points. To the best of our knowledge, the only existing method with consistency guarantees for distribution regression requires kernel density estimation as an intermediate step (which suffers from slow convergence issues in high dimensions), and the domain of the distributions to be compact Euclidean. In this paper, we provide theoretical guarantees for a remarkably simple algorithmic alternative to solve the distribution regression problem: embed the distributions to a reproducing kernel Hilbert space, and learn a ridge regressor from the embeddings to the outputs. Our main contribution is to prove the consistency of this technique in the two-stage sampled setting under mild conditions (on separable, topological domains endowed with kernels). For a given total number of observations, we derive convergence rates as an explicit function of the problem difficulty. As a special case, we answer a 15- year-old open question: we establish the consistency of the classical set kernel [Haussler, 1999; G¨artner et. al, 2002] in regression, and cover more recent kernels on distributions, including those due to [Christmann and Steinwart, 2010].
Noncommutative quantum mechanics and the Aharonov-Casher effect
Creators: name: Mirza, B.
name: Zarei, M.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In this work a new method is developed to investigate the Aharonov-Casher effect in a noncommutative space. It is shown that the holonomy receives non-trivial kinematical corrections.
description: 8 pages, Plain Tex, to appear in Eur. Phys. J. C
Two-Manifold Problems with Applications to Nonlinear System Identification
Creators: name: Boots, Byron
name: Gordon, Geoffrey J.
Publisher: name: Carnegie Mellon University
Year: 2012
Subjects: subject: 170203 Knowledge Representation and Machine Learning
subject: FOS: Psychology

description: Recently, there has been much interest in spectral approaches to learning manifolds— so-called kernel eigenmap methods. These methods have had some successes, but their applicability is limited because they are not robust to noise. To address this limitation, we look at two-manifold problems, in which we simultaneously reconstruct two related manifolds, each representing a different view of the same data. By solving these interconnected learning problems together, two-manifold algorithms are able to succeed where a non-integrated approach would fail: each view allows us to suppress noise in the other, reducing bias. We propose a class of algorithms for two-manifold problems, based on spectral decomposition of cross-covariance operators in Hilbert space, and discuss when two-manifold problems are useful. Finally, we demonstrate that solving a two-manifold problem can aid in learning a nonlinear dynamical system from limited data.
Are Temperature and other Thermodynamics Variables efficient Concepts for describing Granular Gases and/or Flows ?
Creators: name: Evesque, P.
Publisher: name: arXiv
Year: 2005
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Granular flows and vibro-fluidised granular gases have been extensively studied recently; most of the theoretical analyses and the experimental descriptions use temperature and other thermodynamics concepts. However, taking the very simple case of a vibro-fluidised gas made of identical particles, we show the lack of efficiency of such concepts for the understanding of the physics of such systems. This results from both (i) the fact that the vibrator does not transmit the same amount of energy to each particle, but an amount which depends on its mass and/or its size and (ii) from the fact that it is a strongly dissipative medium. We conclude that most experimental device works rather as velostat as a thermostat. Pacs # : 5.40 ; 45.70 ; 62.20 ; 83.70.Fn
description: 7 pages + 1 page, 0 Figure
STAGES OF TRANSITION TO INTERNATIONAL FINANCIAL REPORTING STANDARDS (IFRS) IN UZBEKISTAN AND ITS SUSTAINABLE DEVELOPMENT
Creators: name: Rakhimova, Saida
Publisher: name: Zenodo
Year: 2024

description: This article examines Uzbekistan's transition to International Financial Reporting Standards (IFRS), analyzing its stages, challenges, and impact on sustainable development. By reviewing global experiences and Uzbekistan's specific context, the study underscores the importance of stakeholder engagement, regulatory updates, and tailored strategies for effective IFRS adoption. The findings highlight the potential of IFRS to improve financial transparency, attract investments, and support economic diversification in Uzbekistan.
Genome-wide identification and expression analysis of the carotenoid metabolic pathway genes in pepper (Capsicum annuum L.)
Creators: name: Guo, Qinwei
name: Liu, Huiqin
name: Zhang, Xinhui
name: Zhang, Ting
name: Li, Chaosen
name: Xiang, Xiaomin
name: Cui, Wenhao
name: Fang, Pingping
name: Wan, Hongjian
name: Cao, Chunxin
name: Zhao, Dongfeng
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Carotenoids belong to a major family of isoprenoids which play vital roles in plant growth and development. Pepper (Capsicum annuum L.) is not only a vegetable and condiment grown worldwide, but also can be used as a model organism in fruit color research. In this study, 61 genes known to be involved in mevalonate (MVA), plastidial 2-C-methyl-d-erythritol-4-phosphate (MEP) and carotenoid metabolism (biosynthesis and catabolism) pathways were identified and characterized based on the genome of pepper plants. In the present study, it was found that 56 of the 61 carotenoid metabolism genes in pepper were unevenly distributed throughout 12 chromosomes. CaGGPPS2, CaGGPPS4a and CaGGPPS4b were generally clustered into one region. This study identified CaHMGR1/CaHMGR3 and CaHMGR1/CaHMGR2 as segregation duplication events. In addition, the pepper carotenoid metabolism genes had high variations in gene structure. The key carotenoid metabolism genes showed different expression patterns during the pepper fruit development and under environmental stress conditions. The results obtained in this research investigation will contribute insight to the evolution and function of carotenoid metabolic pathways in pepper fruit.
Developing through relationships with the physical and social environment: disentangling the transition from co-regulation to self-regulation
Creators: name: Perapoch Amado, Marta
Publisher: name: University of East London
Year: 2024
Subjects: regulation
early development
parent-infant dyad
dynamic system theory
naturalistic research
physiology
arousal
attention
EEG

description: The present thesis centres its attention on early regulatory skills of physiological arousal and attention. These abilities play a central role during early infancy and are crucial for achieving autonomy and establishing the foundation for later social, behavioural, and cognitive development.

Early in development, infant’s self-regulatory capacities are thought to be immature, poorly coordinated, and limited. Because of this, co-regulation with the caregiver is particularly important. Much of the infant/ child research emphasizes the developmental increase in self-regulation and highlights a gradual transition from co-regulation (where regulatory processes are shared between child and caregiver) to self-regulation. Research on this transition, however, is scarce and complex and remarkably little is known on how these co-regulatory dynamics between infant-caregiver change and evolve over time.

Taking a novel, multi-method approach that integrates neural, physiological, and behavioural techniques and uses a mixture of home- and naturalistic lab-based research, the present thesis examines the development of self- and co- regulatory processes in infancy. More specifically, it explores whether infants’ physiological and attentional states gradually become less dependent on others as they get better at self-regulation over developmental time.

Evidence is presented showing developmental changes in the way environmental factors (both physical and social) influence infants’ regulation of physiological arousal and attention. Evidence also shows that, contrary to our hypothesis, dyadic strategies, rather than being phased out or replaced, seem to continue to play an important role.
Discussion is focused on the contribution of the findings to theories of the development of dyadic regulatory process, and in identifying new and more naturalistic ways to study them.
Optimal distributed control of a diffuse interface model of tumor growth
Creators: name: Colli, Pierluigi
name: Gilardi, Gianni
name: Rocca, Elisabetta
name: Sprekels, Jürgen
Publisher: name: Weierstrass Institute
Year: 2016
Subjects: subject: Distributed optimal control
subject: first-order necessary optimality conditions
subject: tumor growth
subject: reaction-diffusion equations
subject: Cahn--Hilliard equation
subject: 35K61
subject: 49J20
subject: 49K20
subject: 92C50

description: In this paper, a distributed optimal control problem is studied for a diffuse interface model of tumor growth which was proposed by Hawkins--Daruud et al. in citeHZO. The model consists of a Cahn--Hilliard equation for the tumor cell fraction $vp$ coupled to a reaction-diffusion equation for a function $s$ representing the nutrient-rich extracellular water volume fraction. The distributed control $u$ monitors as a right-hand side the equation for $s$ and can be interpreted as a nutrient supply or a medication, while the cost function, which is of standard tracking type, is meant to keep the tumor cell fraction under control during the evolution. We show that the control-to-state operator is Fréchet differentiable between appropriate Banach spaces and derive the first-order necessary optimality conditions in terms of a variational inequality involving the adjoint state variables.
title: medical conditions/handicaps, quantities, Lama and Daba rites
Creators: name: Fily, Maxime
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2022
Subjects: subject: Lataddi Narua
subject: nru

description: Conforms to: doi:10.34847/cocoon.49aefa90-8c1f-3ba8-a099-0ebefc6a2aa7
description: Using photos, the interviewer asks for illnesses/handicaps such as blindness etc., quantities, and rites/spirits in Na culture
title: Numbers in association with peach + Classifier (round objects, ɭɯ˩)
Creators: name: Fily, Maxime
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2022
Subjects: subject: Lataddi Narua
subject: nru

description: Conforms to: doi:10.34847/cocoon.49aefa90-8c1f-3ba8-a099-0ebefc6a2aa7
description: phonological elicitation session on numbers with the generic classifier ɭɯ˩
Turbo-SMT: Accelerating Coupled Sparse Matrix-Tensor Factorizations by 200x
Creators: name: Papalexakis, Evangelos E.
name: Faloutsos, Christos
name: Mitchell, Tom
name: Partha Pratim Talukdar
name: Sidiropoulos, Nicholas D.
name: Murphy, Brian
Publisher: name: Carnegie Mellon University
Year: 2014
Subjects: subject: 170203 Knowledge Representation and Machine Learning
subject: FOS: Psychology

description: How can we correlate the neural activity in the human brain as it responds to typed words, with properties of these terms (like ‘edible’, ‘fits in hand’)? In short, we want to find latent variables, that jointly explain both the brain activity, as well as the behavioral responses. This is one of many settings of the Coupled Matrix-Tensor Factorization (CMTF) problem. Can we accelerate any CMTF solver, so that it runs within a few minutes instead of tens of hours to a day, while maintaining good accuracy? We introduce Turbo-SMT, a meta-method capable of doing exactly that: it boosts the performance of any CMTF algorithm, by up to 200x, along with an up to 65 fold increase in sparsity, with comparable accuracy to the baseline. We apply Turbo-SMT to BrainQ, a dataset consisting of a (nouns, brain voxels, human subjects) tensor and a (nouns, properties) matrix, with coupling along the nouns dimension. Turbo-SMT is able to find meaningful latent variables, as well as to predict brain activity with competitive accuracy.
Nuclear Matter Properties in Derivative Coupling Models Beyond Mean - Field Approximation
Creators: name: Delfino, A.
name: Malheiro, M.
name: Menezes, D. P.
Publisher: name: arXiv
Year: 1996
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: The structure of infinite nuclear matter is studied with two of the Zimanyi - Moszkowski (ZM) models in the framework of a relativistic approximation which takes into account Hartree terms and beyond and is compared with the results which come out of the relativistic Hartree - Fock approach in the linear Walecka model. The simple treatment applied to these models can be used in substitution to the more complicated Dirac - Brueckner - Hartree - Fock method to perform future calculations in finite nuclei.
description: 11 pages including 1 table, 1 figure (available upon request)
title: Frog Where Are You : the story recorded
Creators: name: Fily, Maxime
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2022
Subjects: subject: Lataddi Narua
subject: nru

description: Conforms to: doi:10.34847/cocoon.49aefa90-8c1f-3ba8-a099-0ebefc6a2aa7
description: Narrative constructed on the book 'Frog Wher Are You' (1969) by Mercer Mayer. How the boy who had lost his frog finds it with her friends at the pond.
Runscripts and analysis scripts used in "Radiative Heating of High-Level Clouds and its Impacts on Climate"
Creators: name: Haslehner, Kerstin
Publisher: name: Zenodo
Year: 2024
Subjects: high-level clouds
cloud-radiative heating
atmospheric science

description: This archive includes the ICON-ESM runscript files and analysis scripts (python 3 scripts) used for the manuscript "Radiative Heating of High-Level Clouds and its Impacts on Climate" by Kerstin Haslehner, Blaž Gasparini and Aiko Voigt, which will be submitted to the Journal of Geophysical Research: Atmospheres.

The paper is based on the MSc thesis of Kerstin Haslehner, 2023, "Cloud Radiative Effects of High-Level Clouds and their Impact on Climate", available under: https://utheses.univie.ac.at/detail/67015/#

Authors: Kerstin Haslehner (kerstin.haslehner@gmail.com), Blaž Gasparini and Aiko Voigt

 

This respository contains:

runscripts: The ICON-ESM runscripts used (git commit of the ICON-ESM model with the our new diagice module: 1f8253c5)

phython-scripts: All python 3 scripts used to analyze the ICON-ESM simulation output data and create all figures and tables.

figures: All figures as pdfs.

The ICON-ESM data used to create the figures and files is archived under https://doi.org/10.5281/zenodo.10534120. Additionally, we used the CloudSat-CALIPSO derived ice water content from Li et al., 2012 is obtainable under https://zenodo.org/records/3879566 and the CCCM cloud radiative heating estimate from Ham et al., 2017, which is calculated using data from CCCM products available from the Atmospheric Science Data Center data https://eosweb.larc.nasa.gov/project/CERES/CER_CCCM_Aqua-FM3-MODIS-CAL-CS_RelD1).

References:

Li, J.-L. F., et al. (2012), An observationally based evaluation of cloud ice water in CMIP3 and CMIP5 GCMs and contemporary reanalyses using contemporary satellite data, J. Geophys. Res., 117, D16105, doi:10.1029/2012JD017640.

Ham, S.-H., S. Kato, F. G. Rose, D. Winker, T. L'Ecuyer, G. G. Mace, D. Painemal, S. Sun-Mack, Y. Chen, and W. F. Miller (2017), Cloud occurrences and cloud radiative effects (CREs) from CERES-CALIPSO-CloudSat-MODIS (CCCM) and CloudSat radar-lidar (RL) products, J. Geophys. Res. Atmos., 122, 8852–8884, doi:10.1002/2017JD026725.
title: ADCO, Cartulaire de Fontenay, premier fragment (XIIIe siècle), Cart. 201 (15 H 9), 175 folios, f. 002r
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2009
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire

description: Cartulaire de Fontenay, premier fragment (XIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 201 (15 H 9), 175 folios. Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de Fontenay, premier fragment (XIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 201 (15 H 9), 175 folios, f. 002r, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb119679755
description: Provenance: https://www.geonames.org/7874015
description: Provenance: http://www.idref.fr/027691802/id
description: Provenance: abbaye de Fontenay
description: Provenance: http://www.wikidata.org/entity/Q464918
Astronomers and the Science Citation Index, 1981--1997
Creators: name: Burstein, D.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The Institute for Science Information (ISI) has generated two lists of citation information for astronomers that are uniquely restricted both as to the years surveyed for the cited papers, and the years surveyed for the citing papers. The main list gives citation data for 62,813 physicists and astronomers whose journal papers were cited 100 times or more from 1981.0 to 1997.5 by papers published during the same time interval. The second list gives the 200 most-cited papers/year published in refereed astronomical journals from 1981-1996, as cited in papers in those same journals from 1981.0-1998.0. Astronomer names were selected from various sources. From this work an Astronomy Citation Database (ACD) has been constructed, containing citation data for 6458+ astronomers, plus additional data for 173 astronomers and the top-10 cited papers published 1981-1996. Various problems, both substantial and subtle, of producing a reasonably fair citation database are detailed. Chief among these are whether to assign either parital or full credit for each author on a given paper. Whether one is honored with one of the top astronomy lifetime-awards is a strong function of how well your work stands out as your own, and in what kind of publications you publish (e.g., the ISI does not keep track of papers in meeting proceedings/books/catalogs). Name confusion affects this kind of analysis to the extent that that it would take an enormous effort to disentangle its effects and, even then, not all name confusion would be settled. A ``modest proposal'' is made that our professional field (and others) go to a system of uniquely associating an identification number to each author on each paper to solve the name confusion problem.
description: 30 pages, LaTeX (aaspp4), 5 tables in 9 pages; 1 ps figure, 5 files in ADS format for easy access to full data set. Alternate copy of tar.gz file available at ftp://samuri.la.asu.edu/pub/burstein/citations
Analyzing huge pathology images with open source software
Creators: name: Deroulers, Christophe
name: Ameisen, David
name: Badoual, Mathilde
name: Gerin, Chloé
name: Granier, Alexandre
name: Lartaud, Marc
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantitative Methods (q-bio.QM)
subject: FOS: Biological sciences

description: Backgr: Digital pathology images are increasingly used both for diagnosis and research, because slide scanners are nowadays broadly available and because the quantitative study of these images yields new insights in systems biology. However, such virtual slides build up a technical challenge since the images occupy often several gigabytes and cannot be fully opened in a computer's memory. Moreover, there is no standard format. Therefore, most common open source tools such as ImageJ fail at treating them, and the others require expensive hardware while still being prohibitively slow. Res: We have developed several cross-platform open source software tools to overcome these limitations. The NDPITools provide a way to transform microscopy images initially in the loosely supported NDPI format into one or several standard TIFF files, and to create mosaics (division of huge images into small ones, with or without overlap) in various TIFF and JPEG formats. They can be driven through ImageJ plugins. The LargeTIFFTools achieve similar functionality for huge TIFF images which do not fit into RAM. We test the performance of these tools on several digital slides and compare them, when applicable, to standard software. A statistical study of the cells in a tissue sample from an oligodendroglioma was performed on an average laptop computer to demonstrate the efficiency of the tools. Concl: Our open source software enables dealing with huge images with standard software on average computers. Our tools are cross-platform, independent of proprietary libraries, and very modular, allowing them to be used in other open source projects. They have excellent performance in terms of execution speed and RAM requirements. They open promising perspectives both to the clinician who wants to study a single slide and to the research team or data centre who do image analysis of many slides on a computer cluster.
Turbo Parsers: Dependency Parsing by Approximate Variational Inference
Creators: name: Martins, Andre F.T.
name: Smith, Noah A.
name: Xing, Eric P.
name: Aguiar, Pedro M.Q.
name: Figueiredo, Mario A. T.
Publisher: name: Carnegie Mellon University
Year: 2010
Subjects: subject: 170203 Knowledge Representation and Machine Learning
subject: FOS: Psychology

description: We present a unified view of two state-of-theart non-projective dependency parsers, both approximate: the loopy belief propagation parser of Smith and Eisner (2008) and the relaxed linear program of Martins et al. (2009). By representing the model assumptions with a factor graph, we shed light on the optimization problems tackled in each method. We also propose a new aggressive online algorithm to learn the model parameters, which makes use of the underlying variational representation. The algorithm does not require a learning rate parameter and provides a single framework for a wide family of convex loss functions, including CRFs and structured SVMs. Experiments show state-of-the-art performance for 14 languages.
Beyond the local approximation to exchange and correlation: the role of the Laplacian of the density in the energy density of Si
Creators: name: Cancio, Antonio C.
name: Chou, M. Y.
Publisher: name: arXiv
Year: 2005
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We model the exchange-correlation (XC) energy density of the Si crystal and atom as calculated by variational Monte Carlo (VMC) methods with a gradient analysis beyond the local density approximation (LDA). We find the Laplacian of the density to be an excellent predictor of the discrepancy between VMC and LDA energy densities in each system. A simple Laplacian-based correction to the LDA energy density is developed by means of a least square fit to the VMC XC energy density for the crystal, which fits the homogeneous electron gas and Si atom without further effort.
description: 4 pages, 3 figures, submitted to Phys. Rev. Lett
Different Modes of Star Formation: Gravitational Collapse of Magnetically Subcritical Cloud
Creators: name: Machida, Masahiro N.
name: Higuchi, Koki
name: Okuzumi, Satoshi
Publisher: name: arXiv
Year: 2017
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Star formation in magnetically subcritical clouds is investigated using a three-dimensional non-ideal magneto-hydrodynamics simulation. Since rapid cloud collapse is suppressed until the magnetic flux is sufficiently removed from the initially magnetically subcritical cloud by ambipolar diffusion, it takes > 5-10t_ff to form a protostar, where t_ff is the freefall timescale of the initial cloud. The angular momentum of the star forming cloud is efficiently transferred to the interstellar medium before the rapid collapse begins, and the collapsing cloud has a very low angular momentum. Unlike the magnetically supercritical case, no large-scale low-velocity outflow appears in such a collapsing cloud due to the short lifetime of the first core. Following protostar formation, a very weak high-velocity jet, which has a small momentum and might disappear at a later time, is driven near the protostar, while the circumstellar disc does not grow during the early mass accretion phase. The results show that the star formation process in magnetically subcritical clouds is qualitatively different from that in magnetically supercritical clouds.
description: 49 pages, 17 figures, accepted for publication in MNRAS
Deconfining Phase Transition as a Matrix Model of Renormalized Polyakov Loops
Creators: name: Dumitru, Adrian
name: Hatta, Yoshitaka
name: Lenaghan, Jonathan
name: Orginos, Kostas
name: Pisarski, Robert D.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: High Energy Physics - Lattice (hep-lat)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We discuss how to extract renormalized from bare Polyakov loops in SU(N) lattice gauge theories at nonzero temperature in four spacetime dimensions. Single loops in an irreducible representation are multiplicatively renormalized without mixing, through a renormalization constant which depends upon both representation and temperature. The values of renormalized loops in the four lowest representations of SU(3) were measured numerically on small, coarse lattices. We find that in magnitude, condensates for the sextet and octet loops are approximately the square of the triplet loop. This agrees with a large $N$ expansion, where factorization implies that the expectation values of loops in adjoint and higher representations are just powers of fundamental and anti-fundamental loops. For three colors, numerically the corrections to the large $N$ relations are greatest for the sextet loop, $\leq 25%$; these represent corrections of $\sim 1/N$ for N=3. The values of the renormalized triplet loop can be described by an SU(3) matrix model, with an effective action dominated by the triplet loop. In several ways, the deconfining phase transition for N=3 appears to be like that in the $N=\infty$ matrix model of Gross and Witten.
description: 24 pages, 7 figures; v2, 27 pages, 12 figures, extended discussion for clarity, results unchanged
title: miscellaneous lexical items (isolation)
Creators: name: Fily, Maxime
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2022
Subjects: subject: Lataddi Narua
subject: nru

description: Conforms to: doi:10.34847/cocoon.49aefa90-8c1f-3ba8-a099-0ebefc6a2aa7
description: Using photos, the interviewer asks for various lexical entries
Tree-Guided Group Lasso for Multi-Task Regression with Structured Sparsity
Creators: name: Seyoung  Kim
name: Xing, Eric P.
Publisher: name: Carnegie Mellon University
Year: 2010
Subjects: subject: 170203 Knowledge Representation and Machine Learning
subject: FOS: Psychology

description: We consider the problem of learning a sparse multi-task regression, where the structure in the outputs can be represented as a tree with leaf nodes as outputs and internal nodes as clusters of the outputs at multiple granularity. Our goal is to recover the common set of relevant inputs for each output cluster. Assuming that the tree structure is available as prior knowledge, we formulate this problem as a new multi-task regularized regression called tree-guided group lasso. Our structured regularization is based on a grouplasso penalty, where groups are defined with respect to the tree structure. We describe a systematic weighting scheme for the groups in the penalty such that each output variable is penalized in a balanced manner even if the groups overlap. We present an efficient optimization method that can handle a largescale problem. Using simulated and yeast datasets, we demonstrate that our method shows a superior performance in terms of both prediction errors and recovery of true sparsity patterns compared to other methods for multi-task learning.
Additional file 1: of Do polymorphisms in protein kinase catalytic subunit alpha-1 gene associated with cancer susceptibility? a meta-analysis and systematic review
Creators: name: Meng, Jialin
name: Fan, Xinyao
name: Zhang, Meng
name: Hao, Zongyao
name: Liang, Chaozhao
Publisher: name: figshare
Year: 2018
Subjects: Medicine
Pharmacology
Environmental Sciences not elsewhere classified
Chemical Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Mathematical Sciences not elsewhere classified
Computational Biology

description: Table S1. Total sample sizes and allelic percentages of enrolled studies. Table S2. Methodological quality of the included studies according to the Newcastle-Ottawa Scale. Table S3. PRISMA 2009 Checklist. Table S4. Details of the sensitivity analyses for the polymorphisms in PRKAA1 and cancer risk. Table S5. P values of the Egger’s test for the polymorphisms in PRKAA1. Figure S1. Begg’s funnel plot for publication bias for PRKAA1 rs13361707 polymorphism (B vs. A). For Begg’s funnel plot, the x-axis is log (OR), and the y-axis is natural logarithm of OR. The horizontal line in the figure represents the overall estimated log (OR). The two diagonal lines indicate the pseudo 95% confidence limits of the effect estimate. Figure S2. Begg’s funnel plot for publication bias for PRKAA1 rs10074991 polymorphism (B vs. A). For Begg’s funnel plot, the x-axis is log (OR), and the y-axis is natural logarithm of OR. The horizontal line in the figure represents the overall estimated log (OR). The two diagonal lines indicate the pseudo 95% confidence limits of the effect estimate. Figure S3. Sensitivity analysis of Asian based group OR Co-efficient for PRKAA1 rs13361707 polymorphism (C vs. T). Results were calculated by omitting each study in turn. The two ends of the dotted lines represent the 95% CI. (PDF 1760 kb)
Relativistic Calculations for Photonuclear Reactions (III): A Consistent Relativistic Analysis of the (e,e'p) and (gamma,p) Reactions
Creators: name: Johansson, J. I.
name: Sherif, H. S.
name: Lotz, G. M.
Publisher: name: arXiv
Year: 1996
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Relativistic calculations for the quasifree electron scattering process (e, e'p) and the direct knockout contribution to (gamma, p) reactions are presented. The spectroscopic factors determined from the former reaction are used to fix the magnitude of the knockout contribution to the (gamma, p) reaction at 60 MeV. The results obtained for several nuclei indicate that the knockout contributions are much larger in magnitude and hence closer to the data than predicted in an earlier comparison based on non-relativistic calculations. We discuss the sensitivity of the results to the choice of parameters for the binding and final state interactions. We find these uncertainties to be more pronounced at the larger missing momenta explored by the (gamma, p) reaction. The implications of the present results for the size of contributions due to meson exchange currents are discussed.
description: LaTeX, 21 pages including 5 figures, submitted to Nuc. Phys. A
title: Phonological elicitations of Ferlus's lexical items, in verb-terminal frame sentence (to_look)
Creators: name: Fily, Maxime
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2022
Subjects: subject: Lataddi Narua
subject: nru

description: Conforms to: doi:10.34847/cocoon.49aefa90-8c1f-3ba8-a099-0ebefc6a2aa7
description: Full frame sentence is 'the old man OBJ to_look', and the set of items corresponds to the first half of the items collected before (limited to the semantically compatible items)
Existence of weak solutions for the Cahn--Hilliard reaction model including elastic effects and damage
Creators: name: Roggensack, Arne
name: Kraus, Christiane
Publisher: name: Weierstrass Institute
Year: 2016
Subjects: subject: Cahn-Hilliard reaction system
subject: rate-dependent damage
subject: phase separation
subject: existence
subject: non-linear Newton boundary condition
subject: doubly non-linear differential inclusion
subject: 35K61
subject: 35K86
subject: 49J40
subject: 35D30

description: In this paper, we introduce and study analytically a vectorial Cahn-Hilliard reaction model coupled with rate-dependent damage processes. The recently proposed Cahn-Hilliard reaction model can e.g. be used to describe the behavior of electrodes of lithium-ion batteries as it includes both the intercalation reactions at the surfaces and the separation into different phases. The coupling with the damage process allows considering simultaneously the evolution of a damage field, a second important physical effect occurring during the charging or discharging of lithium-ion batteries. Mathematically, this is realized by a Cahn-Larché system with a non-linear Newton boundary condition for the chemical potential and a doubly non-linear differential inclusion for the damage evolution. We show that this system possesses an underlying generalized gradient structure which incorporates the non-linear Newton boundary condition. Using this gradient structure and techniques from the field of convex analysis we are able to prove constructively the existence of weak solutions of the coupled PDE system.
Additional file 2: of Harnessing accurate non-homologous end joining for efficient precise deletion in CRISPR/Cas9-mediated genome editing
Creators: name: Guo, Tao
name: Feng, Yi-Li
name: Xiao, Jing-Jing
name: Liu, Qian
name: Sun, Xiu-Na
name: Xiang, Ji-Feng
name: Kong, Na
name: Liu, Si-Cheng
name: Chen, Guo-Qiao
name: Wang, Yue
name: Dong, Meng-Meng
name: Cai, Zhen
name: Lin, Hui
name: Cai, Xiu-Jun
name: Xie, An-Yong
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Figure S1. Comparison of accurate NHEJ in repair of Cas9-induced DSBs between human cells (HEK293 or U2OS) and mouse ES cells. Figure S2. The frequency of “Accurate”, “Deletion”, “Insertion” and “IndDel” in group I events from 71 endogenous gene loci. Figure S3. Nearly all of the + 1 insertions with no additional mutations at repair junctions were templated. Figure S4. Generation of + 1 templated insertions (TI) resulted from paired Cas9 cleavage with the W/W, W/C, C/W, or C/C orientation of paired PAMs. Figure S5. Nearly all of the + 1 templated insertions with no additional mutations could be predicted from paired Cas9 cleavage at the third and fourth base upstream of a PAM. Figure S6. Correlation between + 1 template insertions (TI) and out-of-frame mutations derived from either of the Common, Ideal, or Paired methods. Figure S7. Effect of accurate NHEJ with a frequency below or above 30% on the frequency of out-of-frame editing. Figure S8. Correlation between the out-of-frame editing frequency and the frequency of templated insertions (TI) at 50 genome sites. Figure S9. Comparison of the in-frame editing frequency induced by Common, Paired, and Ideal at 20 genome sites. Figure S10. Distributions of microhomology at repair junctions in 53BP1 wild-type, 53BP1ΔTudor, and 53BP1ΔOD mouse ES cells. Figure S11. Flowchart of the paired Cas9-gRNA protocol for genome editing that requires precise deletion of defined length. (PDF 4737 kb)
Open Educational Resources (OER) at TU Graz - Institutional Integration and development of OER
Creators: name: Ebner, Martin
Publisher: name: Zenodo
Year: 2024

description: Ebner, Martin (2024). Open Educational Resources (OER) at TU Graz  - Institutional Integration and development of OER. Presentation 13 March 2024 in the Series "Aalto RDM & Open Science Training", DOI: 10.5281/zenodo.10812686
Baryonic and mesonic 3-point functions with open spin indices
Creators: name: Bali, Gunnar S.
name: Collins, Sara
name: Glässle, Benjamin
name: Heybrock, Simon
name: Korcyl, Piotr
name: Löffler, Marius
name: Rödl, Rudolf
name: Schäfer, Andreas
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: We have implemented a new way of computing three-point correlation functions. It is based on a factorization of the entire correlation function into two parts which are evaluated with open spin- (and to some extent flavor-) indices. This allows us to estimate the two contributions simultaneously for many different initial and final states and momenta, with little computational overhead. We explain this factorization as well as its efficient implementation in a new library which has been written to provide the necessary functionality on modern parallel architectures and on CPUs, including Intel's Xeon Phi series.
description: 7 pages, 5 figures, Proceedings of Lattice 2017
A Propagative Model of Simultaneous Impact: Existence, Uniqueness, and Design Consequences
Creators: name: Seghete, Vlad
name: Murphey, Todd
Publisher: name: arXiv
Year: 2017
Subjects: subject: Robotics (cs.RO)
subject: FOS: Computer and information sciences

description: This paper presents existence and uniqueness results for a propagative model of simultaneous impacts that is guaranteed to conserve energy and momentum in the case of elastic impacts with extensions to perfectly plastic and inelastic impacts. A corresponding time-stepping algorithm that guarantees conservation of continuous energy and discrete momentum is developed, also with extensions to plastic and inelastic impacts. The model is illustrated in simulation using billiard balls and a two-dimensional legged robot as examples; the latter is optimized over geometry and gait parameters to achieve unique simultaneous impacts.
description: 14 pages
An alpha theory of time-dependent warped accretion discs
Creators: name: Ogilvie, G. I.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The non-linear fluid dynamics of a warped accretion disc was investigated in an earlier paper by developing a theory of fully non-linear bending waves in a thin, viscous disc. That analysis is here extended to take proper account of thermal and radiative effects by solving an energy equation that includes viscous dissipation and radiative transport. The problem is reduced to simple one-dimensional evolutionary equations for mass and angular momentum, expressed in physical units and suitable for direct application. This result constitutes a logical generalization of the alpha theory of Shakura & Sunyaev to the case of a time-dependent warped accretion disc. The local thermal-viscous stability of such a disc is also investigated.
description: 16 pages, 3 figures, to be published in MNRAS