No major association between TGFBR1*6A and prostate cancer
Creators: name: Kaklamani, Virginia
name: Baddi, Lisa
name: Rosman, Diana
name: Liu, Junjian
name: Ellis, Nathan
name: Oddoux, Carole
name: Ostrer, Harry
name: Chen, Yu
name: Ahsan, Habibul
name: Offit, Kenneth
name: Pasche, Boris
Publisher: name: Columbia University
Year: 2004
Subjects: subject: Oncology
subject: Genetics
subject: FOS: Biological sciences
subject: Epidemiology

description: Background: Transforming Growth Factor Beta (TGF-ß) is one of the most potent inhibitor of cell growth 1. Almost all cancer cells loose the ability to be growth inhibited by TGF-ß, which makes loss of TGF-ß growth inhibition a hallmark of cancer development 2. TGFBR1*6A is a common variant of the type I TGF-ß receptor, TGFBR1 3. TGFBR1*6A (*6A) has a deletion of three GCG triplets coding for alanine within a nine alanine (9A) repeat sequence of TGFBR1 (*9A) exon 1, resulting in a six alanine (6A) repeat sequence. The 9-bp deletion that differentiates *6A from *9A is located within the predicted signal sequence cleavage region. In vitro studies have demonstrated that TGFBR1*6A responds less effectively than TGFBR1 to TGF-ß growth inhibitory signals 45. The additional findings of an overrepresentation of TGFBR1*6A heterozygotes and homozygotes among patients with a diagnosis of cancer as compared with the general population led us to postulate that TGFBR1*6A might act as a tumor susceptibility allele 5. Two recent meta-analyses show that TGFBR1*6A carriers may have an increased risk of breast, colon and ovarian cancer 67. To test the hypothesis that TGFBR1*6A may contribute to the development of prostate cancer, we conducted a case control study of patients with biopsy verified prostate cancer cases and geographically and ethnic-status matched controls. Results: A total of 907 cases and controls were genotyped for TGFBR1*6A. The mean age of cases was significantly higher than controls (p &lt; 0.01) but there were no differences in ethnic status between the two groups. There were 59 TGFBR1*6A heterozygotes and three TGFBR1*6A homozygotes among cases, 62 TGFBR1*6A heterozygotes and 1 TGFBR1*6A homozygote among controls. TGFBR1*6A allelic frequency among cases (0.086) was slightly higher than among controls (0.080) but the differences in TGFBR1*6A genotype distribution between cases and controls did not reach statistical significance (p = 0.67) (Table 1). Effect estimates from conditional logistic regression were similar (OR 1.01, 95% CI 0.29–3.52) to those from unconditional logistic regression (OR 0.96, 95% CI 0.56–1.64). Analyses restricted to subjects aged 40 years and above controlling age on a continuous scale produced essentially the same effect estimates (OR 0.94, 95% CI 0.56–1.60). To examine the possibility that TGFBR1*6A is associated with early onset prostate cancer, we determined the prostate cancer risk for individuals above and below the age of 55. Among younger patients with prostate cancer we found that 13 of 59 were TGFBR1*6A carriers yielding an allelic frequency of 0.119, one of the highest TGFBR1*6A allelic frequency ever reported. Only 45 of 367 controls in the same age range were TGFBR1*6A carriers yielding an allelic frequency of 0.063, which is similar to the TGFBR1*6A allelic frequency found among 3,451 healthy controls from Europe and the U.S. 7. The association between carrier status of TGFBR1*6A and prostate cancer in younger age group was significant after adjustment for race (OR 2.13, 95% CI 1.06–4.27) but was not significant after adjustment for race and age strata within groups (OR 2.11, 95% CI 0.98–4.57) (Table 2). While in the older age group we did not observe a significant association either (OR 0.57, 95% CI 0.30–1.10), the test for multiplicative interaction between age and carrier status of TGFBR1*6A was significant (p = 0.01). Table 1 Distribution of Age, Ethnicity, and TGFBR1 Genotypes and Adjusted Odds Ratios of Prostate Cancer by TGFBR1 Genotype Status  Cases (N = 442) Controls (N = 465) P-value 1 Adjusted OR (95% CI)2     N % N %   TGFBR1 genotype       9A/9A 380 86.0 402 86.5 0.67 1.00 (ref) 9A/6A 59 13.4 62 13.3  0.96 (0.56–1.64) 6A/6A 3 0.6 1 0.2   Age       20–40 1 0.2 205 44.1 &lt;0.01  41–60 126 28.5 204 43.9   61–80 308 69.7 55 11.8   80+ 7 1.6 1 0.2   Race       White 396 89.6 415 89.3 1.00  Black 26 5.9 29 6.3   Hispanic 8 1.8 8 1.7   Asian 2 0.5 2 0.4   Other 1 0.2 2 0.4   Unknown 9 2.0 9 1.9   1p-value for Chi-Square or Fisher's Exact Test (comparing proportions) 2 OR was adjusted for age strata and race, based on dominant model. Table 2 Adjusted Odds Ratios of prostate cancer by age groups (&gt; 55, &lt;= 55 years old) Age group/ Genotypes Cases N (% within age strata) Controls N (% within age strata) OR (95% CI)1 OR (95% CI)2 P for testing multiplicative interaction Age = 55      9A/9A 46 (78.0) 322 (87.7) 1.00 1.00  9A/6A or 6A/6A 13 (22.0) 45 (12.3) 2.13 (1.06–4.27) 2.11 (0.98–4.57)  Age &gt; 55     0.01 9A/9A 334 (87.2) 80 (81.6) 1.00 1.00  9A/6A or 6A/6A 49 (12.8) 18 (18.4) 0.64 (0.36–1.17) 0.57 (0.30–1.10)  1 OR was adjusted for race. 2 OR was adjusted for race and age strata within age groups Discussion: Prostate cancer is the most common cancer and the second most common cause of cancer death among U.S. men 8. A similar pattern is observed throughout the western world. There is strong epidemiologic evidence indicating that a large proportion of prostate cancers are caused by heritable factors. The most convincing data is a study of 44,788 Scandinavian twins showing that 42% of prostate cancer cancers may be caused by shared genes 9. Despite intense efforts led by several research teams, the search for prostate cancer susceptibility genes has thus far remained elusive. Recent studies suggest that carriers of deleterious mutations of the BRCA2 gene have an increased prostate cancer risk 10. However, given the low prevalence of deleterious BRCA2 mutations in the general population, it is unlikely to account for a significant proportion of prostate cancer cases. Approximately 14% of the general population carries at least one copy of TGFBR1*6A, which makes it the most common candidate tumor susceptibility allele reported to date. While there is growing evidence that TGFBR1*6A predisposes to the development of breast, colon and ovarian cancer, our data do not suggest that it predisposes to the development of prostate cancer. We have previously shown that TGFBR1*6A homozygotes have an O.R of 2.69 and 2.02 for ovarian and colon cancer, respectively. The present study has the power to detect an O.R. for prostate cancer of 1.70 or higher and therefore rules out a major association between TGFBR1*6A and prostate cancer. However, it does not exclude a smaller O.R., which might have clinical relevance given the high TGFBR1*6A allelic frequency in the general population. It is possible that age differences in cases and controls affected the allele frequencies observed. If the TGFBR1*6A allele predisposes to a lethal malignancy such as prostate cancer, however, its frequency could be higher, not lower, in a younger cohort. Thus, the younger mean age of controls could result in a bias toward the null hypothesis, resulting in a stronger association than that observed. The intriguing findings of a high TGFBR1*6A allelic frequency among prostate cancer cases diagnosed before the age of 55 have to be cautiously interpreted given the fact that this group only included 46 patients. We have previously shown that TGFBR1*6A is not associated with an increased risk of bladder cancer 6. Our results suggest that the association between TGFBR1*6A and prostate cancer is at best very weak but further studies are needed to formally exclude an association with early onset prostate cancer. Methods: DNA was extracted from lymphocytes of blood specimens from 465 consecutive individuals diagnosed with adenocarcinoma of the prostate who received care at the outpatient urology clinic at Memorial Sloan-Kettering Cancer Center from April 2000 to September 2002. The blood samples were collected following completion of diagnostic studies. They were unselected for age or family history. Clinical and pathological records were reviewed to confirm the diagnosis of prostate cancer in all subjects. Once pathological diagnosis of prostate cancer was confirmed, the age of diagnosis was recorded, and all other identifying links were destroyed. The study design and anonymization method were approved by the Memorial Sloan-Kettering Cancer Center Institutional Review Board. A population of 465 healthy male controls aged 20 to 87 years with well-defined ethnic background who had donated blood for various reasons (predominantly pre-natal screening for non-cancer disease) constituted the control group. Controls were matched to the cases on ethnicity and were from the same geographic locations as the prostate cancer cases. None of the controls had any personal history of cancer at the time of blood donation. This was ascertained by a questionnaire completed by each control. Exact age information was not available for 205 controls since it was not collected prospectively but the age range (20 to 40) was known. All personal identifiers were permanently removed from both cases and controls. DNA was extracted by standard technique using the Qiagen DNA extraction kit. The PCR primers used were 5'-CCA CAG GCG GTG GCG GCG CGA TG-3' in the forward direction and 5'-CGT CGC CCC CGG GAF CAG CGC CGC-3' in the reverse direction. A standard solution was prepared using the Clontech Advantage® GC rich kit (BD-Biosciences Clontech, Palo Alto, CA). The PCR reaction mixture included 20 ng of genomic DNA in a 10-µL reaction volume and the following concentration of other reagents: primers (0.25 µM each), 1X GC genomic PCR reaction buffer, 1.625 mM Mg2+, 0.2 mM dNTPs and 0.16 µL of Advantage-GC genomic polymerase mix. Polymerase chain reaction cycling conditions consisted of an initial denaturation period of 3 minutes at 94°C, then 35 cycles of denaturation for 30 seconds at 94°C and annealing/extension for 2 minutes at 72°C, followed by a final extension step of 5 minutes at 72°C. Quality controls were run on a 2% agarose gel. The ABI Prism 310 Genetic Analyzer (Applied Biosystems, Foster City, CA) was used for data acquisition. A peak at 115 base pairs corresponded to TGFBR1 allele, whereas a peak at 107 base pairs corresponded to the TGFBR1*6A variant. The rare equivocal results were confirmed by cloning of the PCR product followed by automated sequencing. Samples were read by two independent investigators unaware of the case /control status. Ten percent of samples were randomly selected and run for quality assurance. Concordance rate was 100%. Statistical analysis Distributions of TGFBR1 genotypes, age, and ethnicity were compared between cases and controls using Fisher's exact tests. To test the hypothesis that the hypomorphic TGFBR1*6A gene is related to an increased prostate cancer risk, adjusted odds ratios of prostate cancer were estimated using both conditional and unconditional logistic regression models. Both models were run since the matched controls of cases with missing genotypes had to be excluded in the conditional models but could be included in the unconditional models. Adjusted odds ratios of prostate cancer were estimated comparing carriers of TGFBR1*6A versus non-carriers under dominant models. Potential confounders such as age (in four strata) and ethnicity were controlled in the analysis. Whether the effects of TGFBR1*6A on prostate cancer differ by age was evaluated by stratified analysis and tests for multiplicative interaction. A small p value indicates that interaction of age and gene is statistically significant on the multiplicative level. For the unconditional models, sensitivity analysis was conducted to evaluate the impact of the fact that the exact age of some controls with age 20–40 years is unknown (N = 126). With 442 cases and 465 controls, the power to detect an OR of 1.7 and 2 in the present study was 0.86 and 0.98, respectively, based on a two-tailed test at the 0.05 significance level. Authors' contributions: All authors made substantial contributions to this paper, including conceiving of the ideas, discussion and writing. All authors read and approved the final manuscript.