Additional file 1 of Heterogeneity of soil bacterial and bacteriophage communities in three rice agroecosystems and potential impacts of bacteriophage on nutrient cycling
Creators: name: Wang, Yajiao
name: Liu, Yu
name: Wu, Yuxing
name: Wu, Nan
name: Liu, Wenwen
name: Wang, Xifeng
Publisher: name: figshare
Year: 2022
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics

description: Additional file 1. Table S1. Chemical applications (apps.) on farms using three rice cropping systems. GZ: Rice double cropping ecosystems in Guangzhou; JMS: Rice single cropping ecosystems in Jiamusi; NJ: Rice-wheat rotation cropping ecosystems in Nanjing. Table S2. Means ± standard deviation for environmental factors variables at the three agroecosystem sites in China. Table S3. Percentage distribution of the dominant genera in soils of three rice cropping agroecosystems. GZ: rice double cropping in Guangzhou; JMS: rice single cropping in Jiamusi; NJ: rice–wheat rotation in Nanjing. Fig. S1. Relative abundance of main microbial phyla (A) and genera (B) in soils of three rice cropping agroecosystems. GZ: rice double cropping in Guangzhou; JMS: rice single cropping in Jiamusi; NJ: rice–wheat rotation in Nanjing. Fig. S2. Principal coordinate analysis (PCoA) of soil microbial community based on Bray–Curtis distance matrices. The percentage represents the explanatory value of the PCoA axes to the difference in sample composition; distances between symbols on the ordination plot reflect relative dissimilarities. GZ: rice double cropping in Guangzhou; JMS: rice single cropping in Jiamusi; NJ: rice–wheat rotation cropping in Nanjing. Fig. S3. Relative abundance of potentially pathogenic bacteria (A) and disease index for four rice diseases in the three agroecosystems in China. Different letters above the bars indicate a significant difference (p &lt; 0.05) according to Kruskal-Wallis H test. GZ: rice double cropping in Guangzhou; JMS: rice single cropping in Jiamusi; NJ: rice–wheat rotation cropping in Nanjing. Fig. S4. Relative abundance of genes related to xenobiotics biodegradation and metabolism in viruses and bacteria in soils of three rice agroecosystems. GZ: rice double cropping in Guangzhou; JMS: rice single cropping in Jiamusi; NJ: rice–wheat rotation in Nanjing. Different letters above the bars indicate a significant difference (p &lt; 0.05) according to Kruskal-Wallis H test. Fig. S5. Relative abundance of genes related to carbohydrate (CHO) metabolism (A) and biosynthesis of secondary (Sec) metabolites (B) in viruses and bacteria in soils of three rice agroecosystems. GZ: rice double cropping in Guangzhou; JMS: rice single cropping in Jiamusi; NJ: rice–wheat rotation in Nanjing. Different letters above the bars indicate a significant difference (p &lt; 0.05) according to Kruskal-Wallis H test. Fig. S6. Relative abundance of Enterboacter phage among soil viruses (A) and relative abundance of Enterboacter among soil bacteria (B) in the three rice agroecosystems. GZ: rice double cropping in Guangzhou; JMS: rice single cropping in Jiamusi; NJ: rice–wheat rotation in Nanjing. Different letters above the bars indicate a significant difference (p &lt; 0.05)according to Kruskal-Wallis H test. Fig. S7. (A) Transmission electron micrograph of Enterobacter phage-NJ. (B) Plate lytic experiment of Enterobacter phage-NJ against nitrogen-fixing Enterobacter cloacae.