cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 2: Figure S2. of Accuracy of genomic selection for alfalfa biomass yield in different reference populations
Creators: name: Annicchiarico, Paolo
name: Nazzicari, Nelson
name: Xuehui Li
name: Yanling Wei
name: Pecetti, Luciano
name: E. Brummer
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology

description: Symmetric heatmap genetic kinship matrix between parent genotypes for two data sets. Data for 124 parent genotypes of the Po Valley population (PV) and 154 parent genotypes of the Mediterranean population (Me). Brighter color indicates greater genetic similarity. (PDF 99Â kb)
Holochilus Brandt 1835
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Holochilus

description: Holochilus Brandt 1835
The genus Holochilus comprises six recognized living species, H. brasiliensis (Desmarest 1819), H. chacarius (Thomas 1906), H. lagigliai (Pardiñas, Teta, Voglino & Fernández 2013), H. sciureus (Wagner 1842), H. venezuelae (Allen 1904), and H. vulpinus (Brants 1827). The genus was distributed from central Argentina and Uruguay in the south to northern Venezuela and the Guianas in the north and from the Amazonian regions of Bolivia, Peru, Ecuador, and Colombia to the Atlantic coast of eastern Brazil (Musser & Carleton 2005; D’Elía et al. 2015; Gonçalves et al. 2015). All cytogenetic data available for the genus was presented on Table 4, and the distribution of diploid and fundamental number of karyotyped specimens were presented on Fig. 5.
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 18, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Additional file 1: Figure S1. of Accuracy of genomic selection for alfalfa biomass yield in different reference populations
Creators: name: Annicchiarico, Paolo
name: Nazzicari, Nelson
name: Xuehui Li
name: Yanling Wei
name: Pecetti, Luciano
name: E. Brummer
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology

description: Frequency distribution of half-sib progeny dry matter yields for two data sets. Data for 124 parent genotypes of the Po Valley population (PV) and 154 parent genotypes of the Mediterranean population (Me). (PDF 18Â kb)
CoxNAMs: Interpretable Deep Learning Model For Survival Analysis
Creators: name: Jiang, Zhenjie
Publisher: name: ETH Zurich
Year: 2022

description: Despite their popularity in other fields, deep learning methods have remained
unpopular in survival analysis applications. Although there have been prior attempts
and research to bring the multilayer perceptron (MLP) to survival analysis
and have demonstrated increased performance compared to the traditional methods,
the uninterpretable nature has made the fully connected networks unattractive.
In this project, we introduce CoxNAMs, an interpretable deep learning
model based on the neural additive models for survival analysis. CoxNAMs
achieve competitive performance against the MLP while having equal or better
interpretability than the traditional methods.
Additional file 2: Table S2. of Socioeconomic variation in incidence of primary and secondary major cardiovascular disease events: an Australian population-based prospective cohort study
Creators: name: Korda, Rosemary
name: Soga, Kay
name: Joshy, Grace
name: Calabria, Bianca
name: Attia, John
name: Wong, Deborah
name: Banks, Emily
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Crude rates of ischemic heart disease events and adjusted hazard ratios (HR), by education, in those with and without prior CVD. (PDF 180 kb)
Additional file 3: Figure S1. of Socioeconomic variation in incidence of primary and secondary major cardiovascular disease events: an Australian population-based prospective cohort study
Creators: name: Korda, Rosemary
name: Soga, Kay
name: Joshy, Grace
name: Calabria, Bianca
name: Attia, John
name: Wong, Deborah
name: Banks, Emily
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Marine Biology
subject: Science Policy

description: Age-adjusted rates of major cardiovascular disease (CVD) events by household income and area-level disadvantage, in those with and without prior CVD. (PDF 228 kb)
Holochilus brasiliensis
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Holochilus
Holochilus brasiliensis

description: Holochilus brasiliensis
Karyotype: 2n = 40 and FN = 56. Autosomal complement: eight biarmed pairs large to small decreasing in size, one small metacentric pair, and 10 small acrocentric pairs. Sex chromosomes: X, a medium acrocentric; Y, a small acrocentric. C-banding metaphases exhibited blocks of constitutive heterochromatin on the pericentromeric region of eight acrocentric pairs, and two biarmed pairs. The X chromosome presented constitutive heterochromatin on the centromeric region and on the short arm, while the Y chromosome presented a distal half heterochromatic region. G-banding was also performed (Freitas et al. 1983, pp. 16, Fig. 4).
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 18, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Additional file 1: Table S1. of Socioeconomic variation in incidence of primary and secondary major cardiovascular disease events: an Australian population-based prospective cohort study
Creators: name: Korda, Rosemary
name: Soga, Kay
name: Joshy, Grace
name: Calabria, Bianca
name: Attia, John
name: Wong, Deborah
name: Banks, Emily
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Comparison of models for major cardiovascular disease (CVD) events rates by level of education, in those with and without prior CVD. (PDF 185 kb)
Explaining species richness: latitudinal gradient in niche breadth: Application of Species Distribution Models to explain relationships among latitude, species richness, niche breadth, and geographic extent in vascular plants at a global scale
Creators: name: Barandun, Marco
Publisher: name: ETH Zurich
Year: 2022
Subjects: subject: Latitudinal gradient
subject: Species distribution modelling
subject: Niche breadth
subject: Rapoport's rule
subject: info:eu-repo/classification/ddc/580
subject: info:eu-repo/classification/ddc/500
subject: Botanical sciences
subject: Natural sciences
subject: FOS: Natural sciences

description: Species richness, i.e. the number of species in a given area, increases from the poles towards the tropics. This is one of the oldest and most famous patterns in ecology. A multitude of hypotheses have been generated trying to explain the underlying mechanisms, many of which require a latitudinal gradient in niche breadth. This study investigates if a latitudinal gradient in niche breadth and/or geographic extent is globally present and if it can explain global species richness patterns for two plant groups. A negative relationship between niche breadth and species richness is detected across all terrestrial biomes. Further, a latitudinal gradient of decreasing niche breadth towards the equator is found for the herbaceous plant group while a more complex gradient is found for the tree group. For both plant groups a global latitudinal gradient in geographic extent increasing from South to North could be identified. This study confirms that niche breadth and species’ geographic extent are linked, however, niche breadth is identified as being a better predictor for species richness, given the geographic limitations to dispersal to which a species’ geographic extent is subjected.
Additional file 4: Table S3. of Socioeconomic variation in incidence of primary and secondary major cardiovascular disease events: an Australian population-based prospective cohort study
Creators: name: Korda, Rosemary
name: Soga, Kay
name: Joshy, Grace
name: Calabria, Bianca
name: Attia, John
name: Wong, Deborah
name: Banks, Emily
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Science Policy

description: Crude rates of major cardiovascular disease (CVD) events and adjusted hazard ratios (HR) by household income and area-level disadvantage, in those with and without prior CVD. (PDF 211 kb)
Supplementary Material from Multispecies genetic structure scales with β-diversity across river hierarchies in a freshwater mussel biodiversity hotspot
Creators: name: Bucholz, Jamie
name: Hopper, Garrett W.
name: Sánchez González, Irene
name: Jackson, Colin
name: Garrick, Ryan C
name: Atkinson, Carla
name: Lozier, Jeffrey D
Publisher: name: The Royal Society
Year: 2024
Subjects: classificationCode: 310399
subject: Ecology not elsewhere classified

description: Bucholz_tables_figures_ESM.pdf
Additional file 4: of Previous infection with virulent strains of Newcastle disease virus reduces highly pathogenic avian influenza virus replication, disease, and mortality in chickens
Creators: name: Costa-Hurtado, Mar
name: Afonso, Claudio
name: Miller, Patti
name: Shepherd, Eric
name: Cha, Ra
name: Smith, Diane
name: Spackman, Erica
name: Kapczynski, Darrell
name: Suarez, David
name: Swayne, David
name: Pantin-Jackwood, Mary
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Study 3: average distribution of NDV-NP antigen by IHC. Tissues from chickens inoculated simultaneously or sequentially with mNDV and with a HPAIV. Single and simultaneously infected groups were analyzed at 2 dpi and at 2Â days after inoculation with the HPAIV in groups sequentially infected (bird 1/bird 2).
Additional file 1: Supplemental Data S1. of Rapid Increase in frequency of gene copy-number variants during experimental evolution in Caenorhabditis elegans
Creators: name: Farslow, James
name: Lipinski, Kendra
name: Packard, Lucille
name: Edgley, Mark
name: Taylor, Jon
name: Stephane Flibotte
name: Moerman, Donald
name: Katju, Vaishali
name: Ulfar Bergthorsson
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Medicine
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Developmental Biology
subject: Marine Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: List of ORFs contained in 25 duplications detected by oaCGH in five control and 25 adaptive recovery experimental C. elegans lines following 180â  212 generations of population expansion under competitive conditions. The duplications are listed in TableÂ 1. Duplication breakpoint coordinates and ORFs contained therein are based on Wormbase version WS243. (PDF 148Â kb)
Holochilus chacarius
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Holochilus
Holochilus chacarius

description: Holochilus chacarius
Karyotype: 2n = 48 and FN = 56. Autosomal complement: five metacentric pairs (four large and one small), and 18 acrocentric pairs medium to small decreasing in size. Sex chromosomes: X, a medium acrocentric; Y, a small acrocentric. C-banding metaphases exhibited blocks of constitutive heterochromatin on the pericentromeric region of all autosomes, with the exception of one large metacentric pair. The X chromosome presented pericentromeric heterochromatic blocks, the Y chromosome was almost entirely heterochromatic. G-banding was also performed (Nachman & Myers 1989, pp 6668, Fig. 1A). The karyotype of H. chacarius was highly variable, with diploid number ranging from 48 to 55, and fundamental number from 56 to 60. This variation occurs within and between populations from Paraguay and Argentina (Table 4, Fig. 5), and was resulted from multiple Robertsonian translocations (Nachman & Myers 1989; Nachman 1992a). Furthermore, two different types of supernumerary chromosome were reported: B1 was a small to large metacentric or submetacentric chromosome that contains only centromeric heterochromatin, and B2 was a small acrocentric chromosome that was largely heterochromatic. The authors reported a pericentromeric inversion of a single X chromosome in one female, terminal euchromatic addition to the short arm of the X chromosome in nine specimens, euchromatic addition adjacent to the pericentromeric region in one autosomal pair of two specimens, and one female with only one X chromosome (Nachman & Myers 1989; Nachman 1992a).
In the original report, Nachman & Myers (1989), and latter Nachman (1992a), considered the fundamental number as the number of all chromosome arms, including sex and B chromosomes. Here the fundamental number was given as the number of autosomal arms, excluding sex and supernumerary chromosomes. A karyotype with 2n = 48 and FN = 60, was reported by Gardner & Patton (1976) for a sample from Paraguay, however this specimen presented a submetacentric X chromosome, that accounts for the difference from the former karyotype. Vidal et al. (1976) reported a karyotype variation for genus Holochilus, 2n = 50–54 and FN = 56–60, for samples from Argentina that seems to belong to H. chacarius. We assumed this correlation, as this variability of diploid and fundamental number was described only for H. chacarius, and due to the proximity of collection localities.
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on pages 18-19, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Additional file 7: Figure S5. of Rapid Increase in frequency of gene copy-number variants during experimental evolution in Caenorhabditis elegans
Creators: name: Farslow, James
name: Lipinski, Kendra
name: Packard, Lucille
name: Edgley, Mark
name: Taylor, Jon
name: Stephane Flibotte
name: Moerman, Donald
name: Katju, Vaishali
name: Ulfar Bergthorsson
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 60506 Virology
subject: Computational Biology

description: Increase in the frequencies of parallel deletion events in two control populations, C2 and C4, containing an overlapping region on Chromosome I. The average copy-number per haploid genome was calculated from qPCR results and is indicated on the vertical axis. The number of recovery generations is indicated on the horizontal axis. The results show a strong decline in average copy-number of these two independent deletions that were initially detected by oaCGH. The deletions have reached fixation when the average copy-number has reached 0. (PDF 70Â kb)
Holochilus sciureus
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Holochilus
Holochilus sciureus

description: Holochilus sciureus
Karyotype: 2n = 56 and FN = 56. Autosomal complement: one small metacentric pair, and 26 acrocentric pairs large to small decreasing in size. Sex chromosomes: X, a medium acrocentric; Y, a small acrocentric (Gardner & Patton 1976; Vidal et al. 1976; Patton et al. 2000).A fundamental number of 55 was reported due to a heteromorphic centric fusion (Freitas et al. 1983, pp. 17, Fig. 6). A different morphology of sex chromosomes was reported by Yonenaga-Yassuda et al. (1987), a subtelocentric X and a submetacentric Y. These authors also reported the presence of one or two large submetacentric B chromosomes. C-banding metaphases exhibited blocks of constitutive heterochromatin on the pericentromeric region of all autosomes. The X chromosome presented constitutive heterochromatin on the pericentromeric region and on the short arm, while the Y chromosome was completely heterochromatic. The B chromosomes presented heterochromatic blocks on the pericentromeric region and on both arms (Freitas et al. 1983; Yonenaga-Yassuda et al. 1987). G- and R-banding were also performed (Baker et al. 1983; Freitas et al. 1983; Yonenaga-Yassuda et al. 1987). Multiple NORs, varying from six to fourteen were localized at the telomeric regions of the short arms of small autosomes (Yonenaga-Yassuda et al. 1987).
Supernumerary chromosomes of H. sciureus were isolated by flow-sorted and used as probe for understand the origin of B chromosomes in tribe Oryzomyini. In situ hybridization of Bs and sex chromosomes of H. sciureus were performed on metaphases of 15 species of Oryzomyini, five of which had Bs. The results revealed that 12 of the species sampled, all belonging to a monophyletic Oryzomyini subclade (clade C and D, recovered by Weksler 2006), were positive for an anonymous ‘Oryzomyini’ shared heterochromatic region (OSHR) on the X and Y chromosomes. The OSHR was also present on Bs of H. sciureus, Nectomys rattus, and N. squamipes, but not on Bs of Oligoryzomys flavescens, and Sooretamys angouya. Two distinct additional OSHR/autosome associations were observed on S. angouya. According to the authors, the OSHR possibly arose 3.0 to 7.8 million years ago on the sex chromosomes of an ancestral species and spread through the action of transposable elements. These results suggest that the diversity of Oryzomyini Bs in number, size, morphology, and genetic content may be explained by their independent origin in different subgroups of species (Ventura et al. 2015).
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on pages 19-20, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Additional file 6: Figure S4. of Rapid Increase in frequency of gene copy-number variants during experimental evolution in Caenorhabditis elegans
Creators: name: Farslow, James
name: Lipinski, Kendra
name: Packard, Lucille
name: Edgley, Mark
name: Taylor, Jon
name: Stephane Flibotte
name: Moerman, Donald
name: Katju, Vaishali
name: Ulfar Bergthorsson
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Increase in the frequencies of four unique duplications that lack overlap in their duplication spans. Frequencies of four unique duplications in adaptive recovery populations 19C, and 19E. The average copy-number per haploid genome was calculated from qPCR results and is indicated on the vertical axis. The number of recovery generations is indicated on the horizontal axis. (PDF 77Â kb)
Additional file 4: Figure S2. of Rapid Increase in frequency of gene copy-number variants during experimental evolution in Caenorhabditis elegans
Creators: name: Farslow, James
name: Lipinski, Kendra
name: Packard, Lucille
name: Edgley, Mark
name: Taylor, Jon
name: Stephane Flibotte
name: Moerman, Donald
name: Katju, Vaishali
name: Ulfar Bergthorsson
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Increase in the frequency of parallel duplication events in two populations containing an overlapping region on Chromosome IV. The average copy-number per haploid genome was calculated from qPCR results and is indicated on the vertical axis. The number of recovery generations is indicated on the horizontal axis. (PDF 71Â kb)
Additional file 8: Figure S6. of Rapid Increase in frequency of gene copy-number variants during experimental evolution in Caenorhabditis elegans
Creators: name: Farslow, James
name: Lipinski, Kendra
name: Packard, Lucille
name: Edgley, Mark
name: Taylor, Jon
name: Stephane Flibotte
name: Moerman, Donald
name: Katju, Vaishali
name: Ulfar Bergthorsson
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 60506 Virology
subject: Computational Biology

description: Increase in the frequencies of parallel deletion events in three adaptive recovery populations (16A, 19A, and 19E), containing an overlapping region on Chromosome X. The average copy-number per haploid genome was calculated from qPCR results and is indicated on the vertical axis. The number of recovery generations is indicated on the horizontal axis. The results show a strong decline in average copy-number of these three independent deletions that were initially detected by oaCGH. The deletions have reached fixation when the average copy-number has reached 0. (PDF 78Â kb)
Additional file 9: Figure S7. of Rapid Increase in frequency of gene copy-number variants during experimental evolution in Caenorhabditis elegans
Creators: name: Farslow, James
name: Lipinski, Kendra
name: Packard, Lucille
name: Edgley, Mark
name: Taylor, Jon
name: Stephane Flibotte
name: Moerman, Donald
name: Katju, Vaishali
name: Ulfar Bergthorsson
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Increase in the frequencies of parallel deletion events in two adaptive recovery populations (66D, and 66E) and one control population (C3) containing another overlapping region on Chromosome X. The average copy-number per haploid genome was calculated from qPCR results and is indicated on the vertical axis. The number of recovery generations is indicated on the horizontal axis. The results show a strong decline in average copy-number of these three independent deletions that were initially detected by oaCGH. The deletions have reached fixation when the average copy-number has reached 0. (PDF 76Â kb)
Holochilus venezuelae
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Holochilus
Holochilus venezuelae

description: Holochilus venezuelae
Karyotype: 2n = 44 and FN = 56. Autosomal complement: seven metacentric pairs (six large to medium decreasing in size and one small), and 14 acrocentric pairs medium to small decreasing in size. Sex chromosomes: X, a large acrocentric; Y, a small acrocentric. Variation in diploid number (2n = 42–44) were reported due to centric fusions affecting acrocentric pairs, besides the presence of one or two medium-sized supernumerary metacentric chromosomes (Aguilera & Perez-Zapata 1989, pp. 200, Fig. 2; Sangines & Aguilera 1991). These variation in diploid number and the presence of supernumerary chromosomes occurs sympatrically on specimens collected in Portuguesa, state of Venezuela (Table 4, Fig. 5). C-banding metaphases showed that five metacentric pairs had very little pericentromeric heterochromatin, while one medium metacentric pair showed a conspicuous band on the pericentromeric region. The small metacentric pair presented a large pericentromeric heterochromatic block extending to the arms. All acrocentric autosomes presented bands on the pericentromeric region, except for one medium-sized pair, which showed no C-bands. The X chromosome possesses two bands, a thick one on the pericentromeric region and another one on the distal region. The Y chromosome was completely heterochromatic. The small metacentric B chromosomes were almost entirely heterochromatic except for the telomeres. G-banding was also performed (Sangines & Aguilera 1991).
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 20, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Additional file 3: Figure S1. of Rapid Increase in frequency of gene copy-number variants during experimental evolution in Caenorhabditis elegans
Creators: name: Farslow, James
name: Lipinski, Kendra
name: Packard, Lucille
name: Edgley, Mark
name: Taylor, Jon
name: Stephane Flibotte
name: Moerman, Donald
name: Katju, Vaishali
name: Ulfar Bergthorsson
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Increase in the frequency of parallel duplication events in two populations containing an overlapping region on Chromosome II. The average copy-number per haploid genome was calculated from qPCR results and is indicated on the vertical axis. The number of recovery generations is indicated on the horizontal axis. (PDF 70Â kb)
Additional file 10: Figure S8. of Rapid Increase in frequency of gene copy-number variants during experimental evolution in Caenorhabditis elegans
Creators: name: Farslow, James
name: Lipinski, Kendra
name: Packard, Lucille
name: Edgley, Mark
name: Taylor, Jon
name: Stephane Flibotte
name: Moerman, Donald
name: Katju, Vaishali
name: Ulfar Bergthorsson
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 60506 Virology

description: Copy-number decreases for five unique deletion events in two adaptive recovery populations (66B, and 66D) that lack overlap in their deletion spans. The average copy-number per haploid genome was calculated from qPCR results and is indicated on the vertical axis. The generation from which the copy-number was estimated is indicated on the horizontal axis. The deletions have reached fixation when the average copy-number has reached 0. (PDF 82Â kb)
Additional file 5: Figure S3. of Rapid Increase in frequency of gene copy-number variants during experimental evolution in Caenorhabditis elegans
Creators: name: Farslow, James
name: Lipinski, Kendra
name: Packard, Lucille
name: Edgley, Mark
name: Taylor, Jon
name: Stephane Flibotte
name: Moerman, Donald
name: Katju, Vaishali
name: Ulfar Bergthorsson
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Increase in the frequencies of five unique duplications that lack overlap in their duplication spans. Frequencies of five unique duplications in adaptive recovery populations 7B, 16C, 50A, and 50D. The average copy-number per haploid genome was calculated from qPCR results and is indicated on the vertical axis. The number of recovery generations is indicated on the horizontal axis. (PDF 81Â kb)
High-precision profile for geoid validation in the FCC region at CERN
Creators: name: Koch, Julia Azumi
name: Marti, Urs
name: Rothacher, Markus
name: Willi, Daniel
Publisher: name: ETH Zurich
Year: 2022
Subjects: Geoid validation
Zenith camera
GNSS
Leveling
GRAVITY MEASUREMENT (GEODESY)
CERN FCC

description: The Large Hadron Collider (LHC), the biggest collider of its type, is reaching its conclusion by 2040. In the scope of initial studies for a post-LHC particle accelerator, the design and feasibility of the Future Circular Collider (FCC) at CERN, with a circumference of around 100 km, are studied until 2025/2026. In the FCC-Geodesy project, that belongs to these initial studies, the reference network on the surface and in the tunnel is under development and a new high-precision geoid model for the significantly larger FCC area will be computed. The alignment of the magnets and thrusters in the tunnel requires a high-precision geoid model with a precision of 30 μm over 225 m. Therefore, we established a 40 km long geoid profile for the assessment of existing and more precise geoid models to be derived in the future for the region. This profile runs in a North-South direction through the area of interest and crosses the French-Swiss boarder twice. In several measurement campaigns in 2021 and 2022, measurements at a spacing of approx. 1 km along the profile were carried out collecting 1) astro-geodetic deflections of the vertical (DoV) with the CODIAC zenith camera, 2) spirit levelling for height determination, 3) corresponding gravimetric measurements and 4) GNSS measurements during two sessions of about 24 hours on 36 semi-permanent points in order to firstly obtain accurate positions for all measurement points and secondly to calculate an ultra-precise GNSS/levelling profile. This poster will present the objectives of the FCC-Geodesy project and the first results of this high-precision profile for geoid model validation.
Strangulotilla Nonveiller 1979
Creators: name: Terine, Joshua B.
name: Lelej, Arkady S.
name: Kumar, Girish P.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mutillidae
Strangulotilla

description: Key to the Oriental species of Strangulotilla
1. Males.............................................................................................. 2
- Females (unknown in S. sureshani sp. nov.). Mandible with preapical tooth on inner margin. Mesosoma widened posterad, 1.3 × longer than minimum width; scutellar scale lacking; propodeum with transverse row of denticles posteriorly, which enlarged medially. T2 without pale setae design, with weak pale fringe posteriorly; T3–4 with band of dense whitish setae, T5–6 laterally with whitish setae. 4.8–5.6 mm ............................................................ S. krombeini Lelej
2. Clypeus with weak medial longitudinal carina and transverse subapical carina. Metasoma black, with sparse recumbent and suberect whitish setae, T2–6 with fringe of whitish setae posteriorly. 6.5–7.2 mm. Sri Lanka ............ S. krombeini Lelej
- Clypeus medially with longitudinal conspicuous depression and without transverse subapical carina. Metasoma brownish, T2–6 with long dense recumbent yellowish setae and sparse suberect whitish setae. 7.73 mm. India (Karnataka)............................................................................................... S. sureshani sp. nov.
description: Published as part of Terine, Joshua B., Lelej, Arkady S. & Kumar, Girish P., 2021, Discovery of the genus Strangulotilla Nonveiller, 1979 (Hymenoptera, Mutillidae) in India and description of a new species from the Western Ghats, pp. 429-436 in Zootaxa 5057 (3) on pages 434-435, DOI: 10.11646/zootaxa.5057.3.7, http://zenodo.org/record/5591645
Public Sector Retirement Policy Implementation in Nigeria: Lessons from International Best Practices
Creators: name: Obeta, R.U.
name: Edwin I. Edwin
Publisher: name: gjrpublication
Year: 2024

description: Nigeria's public sector retirement policy has been plagued by inefficiencies, inconsistencies, and inadequacies, resulting in a pension crisis that affects millions of retirees. As the country grapples with the challenges of an aging population, fiscal sustainability, and social security, it is imperative to draw lessons from international best practices to revamp its public sector retirement policy. This study examines the implementation of public sector retirement policies in Nigeria, identifying the gaps and challenges that hinder effective pension administration. By analyzing international best practices from countries such as Singapore, Australia, and the United Kingdom, this paper distills key lessons that can inform policy reforms in Nigeria. The study reveals that a multi-pillar pension system, robust institutional framework, and innovative funding mechanisms are essential for sustainable pension provision. Methods of data collection were secondary sources such as text books, journals, government documents and internet sources. The found out among others that Nigeria's public sector retirement policy implementation faces challenges, including inadequate funding, inefficient administration and limited stakeholder engagement. The study thus, recommends that institutional frameworks should be strengthened to ensure effective regulation and oversight. The paper therefore, concludes that Nigeria's experience highlights the importance of contextualizing international best practices. Adaptation of global standards to local socio-cultural dynamics facilitates successful policy implementation.
Additional file 11: Supplemental Data S3. of Rapid Increase in frequency of gene copy-number variants during experimental evolution in Caenorhabditis elegans
Creators: name: Farslow, James
name: Lipinski, Kendra
name: Packard, Lucille
name: Edgley, Mark
name: Taylor, Jon
name: Stephane Flibotte
name: Moerman, Donald
name: Katju, Vaishali
name: Ulfar Bergthorsson
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: List of ORFs contained in eight overlapping duplications and deletions in experimental C. elegans lines following 180â  212 generations of population expansion under competitive conditions. Duplication/deletion breakpoint coordinates and ORFs contained therein are based on Wormbase version WS243. (PDF 116Â kb)
Additional file 2: Supplemental Data S2. of Rapid Increase in frequency of gene copy-number variants during experimental evolution in Caenorhabditis elegans
Creators: name: Farslow, James
name: Lipinski, Kendra
name: Packard, Lucille
name: Edgley, Mark
name: Taylor, Jon
name: Stephane Flibotte
name: Moerman, Donald
name: Katju, Vaishali
name: Ulfar Bergthorsson
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Computational Biology

description: List of ORFs contained in 25 deletions detected by oaCGH in five control and 25 adaptive recovery experimental C. elegans lines following 180â  212 generations of population expansion under competitive conditions. The deletions are listed in TableÂ 2. Deletion breakpoint coordinates and ORFs contained therein are based on Wormbase version WS243. (PDF 104Â kb)
Additional file 1: of Sustained low influenza vaccination in health care workers after H1N1 pandemic: a cross sectional study in an Italian health care setting for at-risk patients
Creators: name: Giannattasio, Antonietta
name: Mariano, Miriam
name: Romano, Roberto
name: Chiatto, Fabrizia
name: Liguoro, Ilaria
name: Borgia, Guglielmo
name: Guarino, Alfredo
name: Vecchio, Andrea Lo
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Biotechnology
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: FOS: Biological sciences
subject: Computational Biology

description: STROBE Checklist (DOC 94 kb)
Gahrliepia (Gahrliepia) grenieri Taufflieb 1965
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Trombiculidae
Gahrliepia
Gahrliepia grenieri

description: Gahrliepia (Gahrliepia) grenieri Taufflieb, 1965b:
AFR
Gahrliepia (Gahrliepia) grenieri, Taufflieb et al. 1967
Gahrliepia grenieri, Stekolnikov 2018 a
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 22, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Bothriolepis Eichwald 1840
Creators: name: Lukševičs, Ervīns
name: Beznosov, Pavel
name: Stūris, Valdemārs
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Antiarchi
Bothriolepididae
Bothriolepis

description: Genus Bothriolepis Eichwald, 1840
Type species: Bothriolepis ornata Eichwald, 1840; Priksha River, Novgorod region, Russia; the upper Famennian Lnyanka Formation.
Diagnosis.— Bothriolepididae in which the AMD plate is broadest across its lateral corners, and normally overlaps the ADL and is overlapped by the MxL plate. The MxL plate is broadest through its dorsal corner, with its lateral lamina of similar extent to the lateral lamina of the ADL plate, and not forming extensive contact with the AVL plate.
description: Published as part of Lukševičs, Ervīns, Beznosov, Pavel & Stūris, Valdemārs, 2017, A new assessment of the Late Devonian antiarchan fish Bothriolepis leptocheira from South Timan (Russia) and the biotic crisis near the Frasnian-Famennian boundary, pp. 97-119 in Acta Palaeontologica Polonica 62 (1) on page 100, DOI: 10.4202/app.00265.2016, http://zenodo.org/record/10980819
Investigating microphysical properties of MPCs and precipitation in mountainous terrain
Creators: name: Schär, Mario
Publisher: name: ETH Zurich
Year: 2019
Subjects: Alps; orographic clouds; mixed-phase clouds; snowfall; precipitation; field measurements
info:eu-repo/classification/ddc/550
Earth sciences

description: While a majority of precipitating clouds in the Alps are mixed-phase clouds (MPCs), a lot of microphysical processes behind ice formation and precipitation initiation are still not fully understood. In this thesis, orographic precipitation events were analysed with measurement data from the RACLETS field campaign in Davos during winter 2019 in order to investigate microphysical properties of precipitation and MPCs. Precipitation was analysed with Parsivel laser disdrometers, while in-situ cloud measurements were taken with the holographic imager HOLIMO. Remote sensing and meteorological observations furthermore provided information about atmospheric conditions during the measurement period. In a first case study, a cold front precipitation event was analysed. Comparing measurements from two Parsivel disdrometers at different locations, observed differences in accumulated precipitation could be explained with microphysical properties of precipitation. Increased snowfall rates at one measurement site were mostly the result of higher precipitation particle number concentrations and higher particle fall velocity in combination. In MPC measurements mostly ice crystals were found, compared to only small cloud droplet number concentrations. Both, ice crystal and cloud droplet number densities increased over time. High cloud particle number concentrations furthermore were also consistent with high radar reflectivities measured with a cloud radar. During a second precipitation event, a transition from rainfall to snowfall was investigated. Using Parsivel disdrometer measurements, a transition from typical raindrop size-velocity distributions to typical snow particle distributions was observed. Furthermore, co-existing raindrops and snow particles were found during the short transition period, resulting in bimodal particle size-velocity distributions. Additionally, a melting layer could be observed with radar in the lowest few hundred metres above ground, consistent with Parsivel measurements on a mountain above the melting layer, where only snowfall was detected.
Additional file 2: of Identification of protease m1 zinc metalloprotease conferring resistance to deltamethrin by characterization of an AFLP marker in Culex pipiens pallens
Creators: name: FF Zou
name: Q Guo
name: Y Sun
name: D Zhou
name: MX Hu
name: HX Hu
name: BQ Liu
name: MM Tian
name: XM Liu
name: XX Li
name: L Ma
name: B Shen
name: CL Zhu
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology
subject: 60506 Virology

description: List of the siRNA sequences for RNAi. (DOC 27 kb)
Additional file 1: of Identification of protease m1 zinc metalloprotease conferring resistance to deltamethrin by characterization of an AFLP marker in Culex pipiens pallens
Creators: name: FF Zou
name: Q Guo
name: Y Sun
name: D Zhou
name: MX Hu
name: HX Hu
name: BQ Liu
name: MM Tian
name: XM Liu
name: XX Li
name: L Ma
name: B Shen
name: CL Zhu
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: List of the primers for qRT-PCR. (DOC 30 kb)
Additional file 3: of Identification of protease m1 zinc metalloprotease conferring resistance to deltamethrin by characterization of an AFLP marker in Culex pipiens pallens
Creators: name: FF Zou
name: Q Guo
name: Y Sun
name: D Zhou
name: MX Hu
name: HX Hu
name: BQ Liu
name: MM Tian
name: XM Liu
name: XX Li
name: L Ma
name: B Shen
name: CL Zhu
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: Details of genes in supercontig 3.388 of the Culex pipiens quinquefasciatus genome. (DOC 44 kb)