cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 7 of Immunogenicity of personalized dendritic-cell therapy in HIV-1 infected individuals under suppressive antiretroviral treatment: interim analysis from a phase II clinical trial
Creators: name: de Almeida Baptista, Marcella Vassão
name: da Silva, Laís Teodoro
name: Samer, Sadia
name: Oshiro, Telma Miyuki
name: Shytaj, Iart Luca
name: Giron, Leila B.
name: Pena, Nathalia Mantovani
name: Cruz, Nicolly
name: Gosuen, Gisele Cristina
name: Ferreira, Paulo Roberto Abrão
name: Cunha-Neto, Edécio
name: Galinskas, Juliana
name: Dias, Danilo
name: Sucupira, Maria Cecilia Araripe
name: de Almeida-Neto, Cesar
name: Salomão, Reinaldo
name: da Silva Duarte, Alberto José
name: Janini, Luís Mário
name: Hunter, James R.
name: Savarino, Andrea
name: Juliano, Maria Aparecida
name: Diaz, Ricardo Sobhie
Publisher: name: figshare
Year: 2022
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 7: Fig. S7. Cytokine expression in unstimulated CD4+ and CD8+ T-lymphocytes following MDDC MDDCT. Data were obtained as described in Fig. 3.
Gemini-South + FLAMINGOS Demonstration Science: Near-Infrared Spectroscopy of the z=5.77 Quasar SDSS J083643.85+005453.3
Creators: name: Stern, Daniel
name: Hall, Patrick B.
name: Barrientos, L. Felipe
name: Bunker, Andrew J.
name: Elston, Richard
name: Ledlow, M. J.
name: Raines, S. Nicholas
name: Willis, Jon
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We report an infrared 1-1.8 micron (J+H-bands), low-resolution (R=450) spectrogram of the highest-redshift radio-loud quasar currently known, SDSS J083643.85+005453.3, obtained during the spectroscopic commissioning run of the FLAMINGOS multi-object, near-infrared spectrograph at the 8m Gemini-South Observatory. These data show broad emission from both CIV 1549 and CIII] 1909, with strengths comparable to lower-redshift quasar composite spectra. The implication is that there is substantial enrichment of the quasar environment, even at times less than a billion years after the Big Bang. The redshift derived from these features is z = 5.774 +/- 0.003, more accurate and slightly lower than the z = 5.82 reported in the discovery paper based on the partially-absorbed Lyman-alpha emission line. The infrared continuum is significantly redder than lower-redshift quasar composites. Fitting the spectrum from 1.0 to 1.7 microns with a power law f(nu) ~ nu^(-alpha), the derived power law index is alpha = 1.55 compared to the average continuum spectral index = 0.44 derived from the first SDSS composite quasar. Assuming an SMC-like extinction curve, we infer a color excess of E(B-V) = 0.09 +/- 0.01 at the quasar redshift. Only approximately 6% of quasars in the optically-selected Sloan Digital Sky Survey show comparable levels of dust reddening.
description: 10 pages, 1 figure; to appear in the Astrophysical Journal Letters
The Arecibo L-band Feed Array Zone of Avoidance (ALFAZOA) Shallow Survey
Creators: name: Sanchez-Barrantes, Monica
name: Henning, Patricia A.
name: McIntyre, Travis
name: Momjian, Emmanuel
name: Minchin, Robert
name: Rosenberg, Jessica L.
name: Schneider, Stephen
name: Staveley-Smith, Lister
name: van Driel, Wim
name: Ramatsoku, Mpati
name: Butcher, Zhon
name: Vaez, Ensieh
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: The Arecibo L-band Feed Array Zone of Avoidance (ALFAZOA) Shallow Survey is a blind HI survey of the extragalactic sky behind the northern Milky Way conducted with the ALFA receiver on the 305m Arecibo Radio Telescope. ALFAZOA Shallow covered 900 square degrees at full sensitivity from 30° ${\leq} l {\leq} $75° and |b|$ {\leq}$ 10° and an additional 460 square degrees at limited sensitivity at latitudes up to 20°. It has an rms sensitivity of 5-7 mJy and a velocity resolution of 9 - 20.6 km s$^{-1}$, and detected 403 galaxies out to a recessional velocity of 12,000 km s$^{-1}$, with an angular resolution of 3.4' and a positional accuracy between 0.2' and 1.7'. The survey is complete above an integrated line flux $F_{HI}$ = 2.0 Jy km s$^{-1}$ for half the survey, and above $F_{HI}$ = 2.8 Jy km s$^{-1}$ for the other half. Forty-three percent of the ALFAZOA HI detections have at least one possible optical/NIR counterpart in the literature, and an additional 16% have counterparts that only included previous HI measurements. There are fewer counterparts in regions of high extinction and for galaxies with lower HI mass. Comparing the results of the survey to the predictions of Erdogdu et al. (2006), and using their nomenclature, ALFAZOA confirms the position and extent in the ZOA of the C7, C$ζ$, Pegasus, Corona Borealis and Delphinus structures, but not of the Cygnus void. Two new structures are identified, both connected to the C7 overdensity; one extends to 35°, and the other crosses the ZOA.
description: 19 pages, 18 figures, accepted for publication in the Astronomical Journal
Circeaster sandrae Mah 2006
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Valvatida
Goniasteridae
Circeaster
Circeaster sandrae

description: sandrae Mah, 2006, Circeaster
Circeaster sandrae Mah, 2006: 938, fig. 6A-C.
CURRENT STATUS. — Circeaster sandrae Mah, 2006.
TYPE MATERIAL. — Pacific Ocean • holotype; MUSORSTOM 7 expedition; 12°17’S, 177°28’E; depth 780-794 m; MNHN-IE-2014-517. New Caledonia • 1 paratype; MUSORSTOM 5 expedition; 21°00’S, 160°50’E; depth 745 m; MNHN-IE-2014-324 • 1 paratype; MUSORSTOM 6 expedition; 20°23’S, 166°20’E; depth 800 m; MNHN-IE-2014-315 • 1 paratype; same as for preceding; 23°10’S, 166°49’E; depth 870-1000 m; MNHN-IE-2014-523.
Tonga Islands • 1 paratype; NW Tongatapu; MUSORSTOM 9 expedition; 20°58’S, 175°16’E; depth 869-880 m; MNHN-IE-2014-316. Marquesas Islands • 1 paratype; Nuku Hiva; 08°50’S, 140°10’W; depth 705-794 m; MNHN-IE-2014-317.
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on page 314, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
Categorization of hotspots into three types – weak, moderate and strong to distinguish protein–protein versus protein–peptide interactions
Creators: name: A, Kiran Kumar.
name: Rathore, R. S.
Publisher: name: Taylor & Francis
Year: 2023
Subjects: Biophysics
Biochemistry
Physical Sciences not elsewhere classified
Pharmacology
Biotechnology
Chemical Sciences not elsewhere classified
Biological Sciences not elsewhere classified

description: Protein–protein and protein–peptide interactions (PPI and PPepI) belong to a similar category of interactions, yet seemingly subtle differences exist among them. To characterize differences between protein–protein (PP) and protein–peptide (PPep) interactions, we have focussed on two important classes of residues-hotspot and anchor residues. Using implicit solvation-based free energy calculations, a very large-scale alanine scanning has been performed on benchmark datasets, consisting of over 5700 interface residues. The differences in the two categories are more pronounced, if the data were divided into three distinct types, namely – weak hotspots (having binding free energy loss upon Ala mutation, ΔΔG, ∼2–10 kcal/mol), moderate hotspots (ΔΔG, ∼10–20 kcal/mol) and strong hotspots (ΔΔG ≥ ∼20 kcal/mol). The analysis suggests that for PPI, weak hotspots are predominantly populated by polar and hydrophobic residues. The distribution shifts towards charged and polar residues for moderate hotspot and charged residues (principally Arg) are overwhelmingly present in the strong hotspot. On the other hand, in the PPepI dataset, the distribution shifts from predominantly hydrophobic and polar (in the weak type) to almost similar preference for polar, hydrophobic and charged residues (in moderate type) and finally the charged residue (Arg) and Trp are mostly occupied in the strong type. The preferred anchor residues in both categories are Arg, Tyr and Leu, possessing bulky side chain and which also strike a delicate balance between side chain flexibility and rigidity. The present knowledge should aid in effective design of biologics, by augmentation or disruption of PPIs with peptides or peptidomimetics. Communicated by Ramaswamy H. Sarma
Neutrino masses and mixing: Singular mass matrices and Quark-lepton symmetry
Creators: name: Dorsner, I.
name: Smirnov, A. Yu.
Publisher: name: arXiv
Year: 2004
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We suggest an approach to explain the observed pattern of the neutrino masses and mixing which employs the weakly broken quark-lepton symmetry and does not require introduction of an ad hoc symmetry of the neutrino sector. The mass matrices are nearly equal for all quarks and leptons. They have very small determinants and hierarchical form with expansion parameter lambda = 0.26. The latter can be realized, e.g., in the model with U(1) family symmetry. The symmetry is broken at the lambda^2 level. Large lepton mixing appears as a result of summation of the neutrino and charged lepton rotations which diagonalize the mass matrices in contrast with quark sector where the up quarks and down quarks rotations cancel each other. We show that the flip of the sign of rotation in the lepton sector is a result of the seesaw mechanism which also enhances the neutrino mixing. In this approach one expects, in general, deviation of the 2-3 mixing from maximal, s_{13} \sim (1-3) lambda^2, hierarchical neutrino mass spectrum, and m_{ee} < 10^{-2} eV. The scenario is consistent with the thermal leptogenesis and (in SUSY context) bounds on lepton number violating processes, like mu to e gamma.
description: 25 pages, one figure, ReVTeX4, Nucl. Phys. B version
MOESM15 of The complete mitochondrial genome of Taxus cuspidata (Taxaceae): eight protein-coding genes have transferred to the nuclear genome
Creators: name: Kan, Sheng-Long
name: Shen, Ting-Ting
name: Gong, Ping
name: Ran, Jin-Hua
name: Wang, Xiao-Quan
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Additional file 15: Table S7. Number of RNA editing sites predicted from PREP-Mt.
Additional file 1 of Small-scale scattering heterogeneities beneath the northern Tien Shan from the teleseismic P wavefield
Creators: name: Xiaolong Ma
name: Zongying Huang
Publisher: name: figshare
Year: 2020
Subjects: subject: Space Science
subject: Medicine
subject: Pharmacology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Table S1. Event information used in this study. Figure S1. Amplitude distribution for maximum teleseismic P-waves from all the events listed in Additional file 1: Table S1. The numerals in the horizontal axis are in correspondence to the numbers in the first column (Event No.) of Table S1. The absolute maximum values of P-wave amplitudes are shown in micron (Âµm).
Calliaster sarahae Mah 2018
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Valvatida
Goniasteridae
Calliaster
Calliaster sarahae

description: sarahae Mah, 2018 Calliaster
Calliaster sarahae Mah, 2018: 22.
CURRENT STATUS. — Calliaster sarahae Mah, 2018.
TYPE MATERIAL. — Madagascar • holotype; 14°50’S, 47°00’E; depth 442 m; MNHN-IE-2007-1039 • 1 paratype; 12°53’S, 48°9’E; depth 480- 520 m; MNHN-IE-2013-6994 • 1 paratype; 12°43’0”S, 48°13’4”E; depth 350-360 m; MNHN-IE-2013-6995 • 1 paratype; 12°42.4’S, 48°14.3’E; depth 285-295 m; MNHN-IE-2013-6996 • 1 paratype; Walters shoal (south of Cape Sainte Marie); 33°11’S, 44°00’E; depth 620-635 m; MNHN-IE-2013-6997.
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on page 314, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
Diffraction tomography with a deep image prior
Creators: name: Zhou, Kevin C.
name: Horstmeyer, Roarke
Publisher: name: arXiv
Year: 2019
Subjects: subject: Image and Video Processing (eess.IV)
subject: Biological Physics (physics.bio-ph)
subject: Optics (physics.optics)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Physical sciences

description: We present a tomographic imaging technique, termed Deep Prior Diffraction Tomography (DP-DT), to reconstruct the 3D refractive index (RI) of thick biological samples at high resolution from a sequence of low-resolution images collected under angularly varying illumination. DP-DT processes the multi-angle data using a phase retrieval algorithm that is extended by a deep image prior (DIP), which reparameterizes the 3D sample reconstruction with an untrained, deep generative 3D convolutional neural network (CNN). We show that DP-DT effectively addresses the missing cone problem, which otherwise degrades the resolution and quality of standard 3D reconstruction algorithms. As DP-DT does not require pre-captured data or pre-training, it is not biased towards any particular dataset. Hence, it is a general technique that can be applied to a wide variety of 3D samples, including scenarios in which large datasets for supervised training would be infeasible or expensive. We applied DP-DT to obtain 3D RI maps of bead phantoms and complex biological specimens, both in simulation and experiment, and show that DP-DT produces higher-quality results than standard regularization techniques. We further demonstrate the generality of DP-DT, using two different scattering models, the first Born and multi-slice models. Our results point to the potential benefits of DP-DT for other 3D imaging modalities, including X-ray computed tomography, magnetic resonance imaging, and electron microscopy.
Utilization and Disposal of Poultry Byproducts and Wastes
Creators: name: Kahle, Humbert Scott
name: Gray, Leo R.
name: Kahle, Humbert Scott
name: Gray, Leo R.
Publisher: name: Unknown
Year: 1956
Subjects: Livestock Production/Industries
Research and Development/Tech Change/Emerging Technologies

description: Excerpts from the report: Unavoidable problems of byproduct and waste disposal have plagued the poultry slaughtering industry for many years. The problems have become more acute with development of large-scale commercial plants for poultry slaughter. Poultry byproducts and wastes accumulate at every slaughtering plant and must usually be removed daily. Recoverable inedible byproducts (blood, feathers, and offal) comprise up to 50 percent of the live weight of all poultry killed. These materials deteriorate rapidly, attract vermin, create offensive odors, and are unsightly. Their high moisture content and considerable bulk make handling difficult. Where poultry are fed, manure accumulates at the rate of about 2 pounds of excreta per pound of feed intake. Large volumes of waste water result from dressing and evisceration operations. The present necessity for daily removal and the objectionable characteristics of the byproducts limit opportunities for profitable disposal by most slaughterers. This study is a preliminary investigation of poultry byproduct utilization and related problems. It was designed to describe the nature and volume of byproducts and wastes from poultry slaughtering plants; to evaluate potentialities and limitations of existing uses of such byproducts; and to set forth needs for further research. This report is designed also to increase the interest and understanding of members of the poultry industry, poultry scientists, economists, and others in byproduct and waste disposal problems.
Realization of a magnetically guided atomic beam in the collisional regime
Creators: name: Lahaye, T.
name: Vogels, J. M.
name: Guenter, K.
name: Wang, Z.
name: Dalibard, J.
name: Guery-Odelin, D.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Other Condensed Matter (cond-mat.other)
subject: FOS: Physical sciences

description: We describe the realization of a magnetically guided beam of cold rubidium atoms, with a flux of $7\times 10^9$ atoms/s, a temperature of 400 $μ$K and a mean velocity of 1 m/s. The rate of elastic collisions within the beam is sufficient to ensure thermalization. We show that the evaporation induced by a radio-frequency wave leads to appreciable cooling and increase in phase space density. We discuss the perspectives to reach the quantum degenerate regime using evaporative cooling.
description: Submitted to Phys. Rev. Lett
Inverse of generalized Nevanlinna function that is holomorphic at infinity
Creators: name: Borogovac, Muhamed
Publisher: name: arXiv
Year: 2020
Subjects: subject: Functional Analysis (math.FA)
subject: Complex Variables (math.CV)
subject: FOS: Mathematics
subject: 47B50 47A56 30E99

description: Let $\left(\mathcal{H},\left(.,.\right)\right)$ be a Hilbert space and let $\mathcal{L}\left(\mathcal{H}\right)$ be the linear space of bounded operators in $\mathcal{H}$. In this paper, we deal with $\mathcal{L}(\mathcal{H})$-valued function $Q$ that belongs to the generalized Nevanlinna class $\mathcal{N}_κ (\mathcal{H})$, where $κ$ is a non-negative integer. It is the class of functions meromorphic on $C \backslash R$, such that $Q(z)^{*}=Q(\bar{z})$ and the kernel $\mathcal{N}_{Q}\left( z,w \right):=\frac{Q\left( z \right)-{Q\left( w \right)}^{\ast }}{z-\bar{w}}$ has $κ$ negative squares. A focus is on the functions $Q \in \mathcal{N}_κ (\mathcal{H})$ which are holomorphic at $ \infty$. A new operator representation of the inverse function $\hat{Q}\left( z \right):=-{Q\left( z \right)}^{-1}$ is obtained under the condition that the derivative at infinity $Q^{'}\left( \infty\right):=\lim\limits_{z\to \infty}{zQ(z)}$ is boundedly invertible operator. It turns out that $\hat{Q}$ is the sum $\hat{Q}=\hat{Q}_{1}+\hat{Q}_{2},\, \, \hat{Q}_{i}\in \mathcal{N}_{κ_{i}}\left( \mathcal{H} \right)$ that satisfies $κ_{1}+κ_{2}=κ$. That decomposition enables us to study properties of both functions, $Q$ and $\hat{Q}$, by studying the simple components $\hat{Q}_{1}$ and $\hat{Q}_{2}$.
description: 19 pages
Data on neutron-neutron scattering length extracted in the n+2H-->n+n+p reaction at 60 MeV
Creators: name: Konobeevski, E. S.
name: Afonin, A. A.
name: Zuyev, S. V.
name: Kasparov, A. A.
name: Mitcuk, V. V.
name: Mordovskoy, M. V.
name: Potashev, S. I.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: $^{1}S_{0}$ \textit{nn}-scattering length has been measured in the \textit{nd}-breakup reaction at 60 MeV. The experiment was performed in the final state interaction geometry with registration of all three secondary particles. The scattering length $a_{nn} = -16.3 \pm 0.5$~fm was obtained from a comparison of the experimental dependence of the \textit{nd}-breakup yield on the relative energy of \textit{nn}-pair with the simulation results. An analysis of this value of scattering length together with the data obtained in other experiments on \textit{nd}- and \textit{dd}-breakup confirms the hypothesis about the influence of $3N$-forces on the values of \textit{nn}-interaction parameters extracted in these reactions.
description: 10 pages, 6 figures
Additional file 1 of Livestock ownersâ€™ anthrax prevention practices and its associated factors in Sekota Zuria district, Northeast Ethiopia
Creators: name: Kibeb Seid
name: Atsede Shiferaw
name: Nurhusien Yesuf
name: Terefe Derso
name: Mekonnen Sisay
Publisher: name: figshare
Year: 2020
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 1: Table S1. Bivariate analysis of variables associated with anthrax prevention practice in among livestock owners in Sekota Zuria district, northeast Ethiopia. This data/table shows the independent variables associated with anthrax prevention practice, included during bivariable analysis among livestock owners in Sekota Zuria district.
Anomaly Detection in Connected and Automated Vehicles using an Augmented State Formulation
Creators: name: Wang, Yiyang
name: Masoud, Neda
name: Khojandi, Anahita
Publisher: name: arXiv
Year: 2020
Subjects: subject: Robotics (cs.RO)
subject: Signal Processing (eess.SP)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: In this paper we propose a novel observer-based method for anomaly detection in connected and automated vehicles (CAVs). The proposed method utilizes an augmented extended Kalman filter (AEKF) to smooth sensor readings of a CAV based on a nonlinear car-following motion model with time delay, where the leading vehicle's trajectory is used by the subject vehicle to detect sensor anomalies. We use the classic $χ^2$ fault detector in conjunction with the proposed AEKF for anomaly detection. To make the proposed model more suitable for real-world applications, we consider a stochastic communication time delay in the car-following model. Our experiments conducted on real-world connected vehicle data indicate that the AEKF with $χ^2$-detector can achieve a high anomaly detection performance.
description: Accepted to be Published in: 2020 Forum on Integrated and Sustainable Transportation Systems (FISTS), Delft, Netherlands, 2020, pp. 156-161. arXiv admin note: text overlap with arXiv:1911.01531
Additional file 1 of Sex-specific patterns of senescence in artificial insect populations varying in sex-ratio to manipulate reproductive effort
Creators: name: Jehan, Charly
name: Chogne, Manon
name: Rigaud, Thierry
name: Moret, Yannick
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 1: Table S1. AICc values for the models presented in Tables 2 and 3. The models in bold are those presented in the tables. Figure S1. Male and female age specific mortality rate according to time for each sex-ratio condition. Arrow indicate the time when the values of 50% of mortality rate is reached for the first time and dashed lines indicate 50% of the population is dead. Values are means among replicates ± s. e. m. Figure S2. Details of variation in fertility in females (A) and males (B). Values are means among replicates ± s. e. m. Figure S3. Physiological parameters: females in bright grey and males in black. Body condition, PO activity according to time, Total-PO activity according to time and sex-ratio condition, Haemocyte count, Proportion of individuals producing antibacterial activity, Diameter of inhibition zone according to time and sex-ratio condition. Values are means among replicates ± s. e. m.
Additional file 8 of Immunogenicity of personalized dendritic-cell therapy in HIV-1 infected individuals under suppressive antiretroviral treatment: interim analysis from a phase II clinical trial
Creators: name: de Almeida Baptista, Marcella Vassão
name: da Silva, Laís Teodoro
name: Samer, Sadia
name: Oshiro, Telma Miyuki
name: Shytaj, Iart Luca
name: Giron, Leila B.
name: Pena, Nathalia Mantovani
name: Cruz, Nicolly
name: Gosuen, Gisele Cristina
name: Ferreira, Paulo Roberto Abrão
name: Cunha-Neto, Edécio
name: Galinskas, Juliana
name: Dias, Danilo
name: Sucupira, Maria Cecilia Araripe
name: de Almeida-Neto, Cesar
name: Salomão, Reinaldo
name: da Silva Duarte, Alberto José
name: Janini, Luís Mário
name: Hunter, James R.
name: Savarino, Andrea
name: Juliano, Maria Aparecida
name: Diaz, Ricardo Sobhie
Publisher: name: figshare
Year: 2022
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 8: Fig. S8. Inter-group comparison of the immunogenicity of MDDCT. Comparison of the levels of IFN-γ, IL-2, and TNF production levels by CD4+ and CD8+ T-cells in individuals receiving MDDCT only (G5) and individuals receiving MDDCT with nicotinamide and auranofin (G6). Data were analyzed by one-way ANOVA followed by Dunn´s post-test. *p
Gamow-Teller transitions and deformation in the proton-neutron random phase approximation
Creators: name: Stetcu, Ionel
name: Johnson, Calvin W.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We investigate reliability of Gamow-Teller transition strengths computed in the proton-neutron random phase approximation, comparing with exact results from diagonalization in full $0\hbarω$ shell-model spaces. By allowing the Hartree-Fock state to be deformed, we obtain good results for a wide variety of nuclides, even though we do not project onto good angular momentum. We suggest that deformation is as important or more so than pairing for Gamow-Teller transitions.
description: 8 pages, 5 figures; added references, clarified discussion with regards to stability
Astropecten scoparius Muller & Troschel 1842
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Paxillosida
Astropectinidae
Astropecten
Astropecten scoparius

description: scoparius Müller & Troschel, 1842, Astropecten
(Fig. 26)
Astropecten scoparius Müller & Troschel, 1842: 71. — Clark 1989: 268.
CURRENT STATUS. — Astropecten scoparius Müller & Troschel, 1842.
TYPE MATERIAL. — Unknown origin • 3 syntypes; MNHN- IE-2014-579.
REMARK
Astropecten scoparius occurs in Japanese and Taiwanese waters.
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on page 314, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
On product minimal Lagrangian submanifolds in complex space forms
Creators: name: Cheng, Xiuxiu
name: Hu, Zejun
name: Moruz, Marilena
name: Vrancken, Luc
Publisher: name: arXiv
Year: 2019
Subjects: subject: Differential Geometry (math.DG)
subject: FOS: Mathematics
subject: 53B25, 53C42, 53D12

description: In this paper we consider minimal Lagrangian submanifolds in $n$-dimensional complex space forms. More precisely, we study such submanifolds which, endowed with the induced metrics, write as a Riemannian product of two Riemannian manifolds, each having constant sectional curvature. As the main result, we give a complete classification of these submanifolds.
Regulating Bulk and Surface Charge Behaviour of Photoanodes for Enhanced Solar Water Oxidation Efficiency
Creators: name: PENG LUAN
Publisher: name: Monash University
Year: 2021
Subjects: subject: 30604 Electrochemistry
subject: FOS: Chemical sciences

description: This thesis aims at addressing global energy issues by photoelectrochemistry method. By designing advanced photoelectrodes favoring for charge utilization, a high solar water splitting efficiency can be achieved to produce clean and sustainable hydrogen fuels.
The Use of Frozen Foods by Restaurants
Creators: name: Badger, Henry T.
name: Badger, Henry T.
Publisher: name: Unknown
Year: 1956
Subjects: subject: Food Consumption/Nutrition/Food Safety
subject: Marketing
subject: FOS: Economics and business
subject: Research and Development/Tech Change/Emerging Technologies

description: Excerpts from the report: The production of frozen foods has more than tripled since World War II and promises to continue to increase for some time to come. What will this rapid growth of the frozen food industry mean to future marketing practices in the food industry as a whole? The Agricultural Marketing Service has undertaken studies designed to shed light on the changes which are taking place in each major food outlet. It has been necessary to survey intensively each segment of the food industry using frozen foods. This report presents the results of a survey of the use of frozen foods by the restaurant industry.
Quantum Dynamics of Magnetic and Electric Dipoles and Berry's Phase
Creators: name: Furtado, Claudio
name: Ribeiro, C. A. de Lima
Publisher: name: arXiv
Year: 2003
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We study the quantum dynamics of neutral particle that posseses a permanent magnetic and electric dipole moments in the presence of an electromagnetic field. The analysis of this dynamics demonstrates the appearance of a quantum phase that combines the Aharonov-Casher effect and the He-Mckellar-Wilkens effect. We demonstrate that this phase is a special case of the Berry's quantum phase. A series of field configurations where this phase would be found are presented. A generalized Casella-type effect is found in one these configurations. A physical scenario for the quantum phase in an interferometric experiment is proposed.
description: 5 pages, 2 figures
Additional file 9 of Immunogenicity of personalized dendritic-cell therapy in HIV-1 infected individuals under suppressive antiretroviral treatment: interim analysis from a phase II clinical trial
Creators: name: de Almeida Baptista, Marcella Vassão
name: da Silva, Laís Teodoro
name: Samer, Sadia
name: Oshiro, Telma Miyuki
name: Shytaj, Iart Luca
name: Giron, Leila B.
name: Pena, Nathalia Mantovani
name: Cruz, Nicolly
name: Gosuen, Gisele Cristina
name: Ferreira, Paulo Roberto Abrão
name: Cunha-Neto, Edécio
name: Galinskas, Juliana
name: Dias, Danilo
name: Sucupira, Maria Cecilia Araripe
name: de Almeida-Neto, Cesar
name: Salomão, Reinaldo
name: da Silva Duarte, Alberto José
name: Janini, Luís Mário
name: Hunter, James R.
name: Savarino, Andrea
name: Juliano, Maria Aparecida
name: Diaz, Ricardo Sobhie
Publisher: name: figshare
Year: 2022
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 9: Fig. S9. Impact of MDDCT on the level of IFN- γ in plasma. The Fig. shows the level of IFN-γ in individuals receiving the personalized dendritic-cell therapy (DCT), alone (G5, in black) or following the conditioning regimen consisting of auranofin + nicotinamide (G6, in blue). IFN-gamma was measured by ELISA testing, and data were analyzed by two-way ANOVA. The P-value reported refers to the interaction between time and the previous conditioning regimen.
Novodinia semicoronata
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Brisingida
Brisingidae
Novodinia
Novodinia semicoronata

description: semicoronata Perrier, 1885, Brisinga
Brisinga semicoronata Perrier, 1885a: 442; 1894: 75, pl. 5.
Novodinia semicoronata ‒ Clark & Downey 1992: 475.
CURRENT STATUS. — Novodinia semicoronata (Perrier, 1885).
TYPE MATERIAL. — Canary Islands • 1 syntype; station 73; Talisman expedition; 1883; 25°39’N, 18°26’W; depth 1435- 1056 m; MNHN-IE-2014-111 • 1 syntype; same as for preceding; MNHN- IE-2014-112.
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on page 314, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
MOESM7 of Comparative transcriptome analysis reveals the response mechanism of Cf-16-mediated resistance to Cladosporium fulvum infection in tomato
Creators: name: Zhang, Dongye
name: Bao, Yufang
name: Sun, Yaoguang
name: Yang, Huanhuan
name: Zhao, Tingting
name: Li, Huijia
name: Du, Chong
name: Jiang, Jingbin
name: Li, Jingfu
name: Xie, Libo
name: Xu, Xiangyang
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Additional file 7: Table S7. Up-regulated DEGs in the significantly enriched KEGG pathway “Plant hormone signal transduction” in Cf-16 tomato and Moneymaker at 4 dpi.
Tailoring a Molecule's Optical Absorbance Using Surface Plasmonics
Creators: name: Mowbray, Duncan John
name: Despoja, Vito
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The design of novel functional materials in silico is severely hampered by the lack of robust and computationally efficient methods for describing both molecular absorbance and screening on substrates. Here we employ our hybrid $G_0[W_0+ΔW]$-BSE implementation, which incorporates the substrate via its screening $ΔW$ at both the quasiparticle $G_0W_0$ level and when solving the Bethe-Salpeter equation (BSE). We show this method can be used to both efficiently and accurately describe the absorption spectra of physisorbed molecules on metal substrates and thereby tailor the molecule's absorbance by altering the surface plasmon's energy. Specifically, we investigate how the optical absorption spectra of three prototypical $π$-conjugated molecules: benzene (C$_6$H$_6$), terrylene (C$_{30}$H$_{16}$) and fullerene (C$_{60}$), depends on the Wigner-Seitz radius $r_s$ of the metallic substrate. To gain further understanding of the light--molecule/substrate interaction, we also study the bright exciton's electron and hole densities and their interactions with infrared active vibrational modes. Our results show that (1) benzene's bright $E_{1u}^1$ exciton at 7.0 eV, whose energy is insensitive to changes in $r_s$, could be relevant for photocatalytic dehydrogenation and polymerization reactions, (2) terrylene's bright $B_{3u}$ exciton at 2.3 eV hybridizes with the surface plasmon, allowing the tailoring of the excitonic energy and optical activation of a surface plasmon-like exciton, and (3) fullerene's $π-π^*$ bright and dark excitons at 6.4 and 6.8 eV hybridize with the surface plasmon, resulting in the tailoring of their excitonic energy and the activation of both a surface plasmon-like exciton and a dark quadrupolar mode via symmetry breaking by the substrate.
description: 10 pages, 7 figures
Synthesis, anticancer activity and molecular modeling study of novel substituted triazole linked tetrafluoronaphthalene hybrid derivatives
Creators: name: Erdoğan, Musa
name: Onder, Ferah Comert
Publisher: name: Taylor & Francis
Year: 2023
Subjects: Biophysics
Biochemistry
Pharmacology
Biotechnology
Chemical Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Information Systems not elsewhere classified
Cancer

description: To create some novel anticancer molecules, a library of novel series of various triazoles linked to the hydroxyl group of 5,6,7,8-tetrafluoronaphthalen-1-ol (3) was designed and synthesized via CuAAC reaction ‘Click Chemistry’ of tetrafluoronaphthalene based terminal alkyne with substituted organic azides. The structural characterizations of the targeted Click products 9–18 were confirmed by FTIR, 1H NMR, 19F NMR, 13C NMR and HRMS spectroscopy. Synthesized compounds were tested in two triple negative breast cancer (TNBC) cell lines to understand their anticancer potentials. According to our findings, compounds 14 and 13 showed high cytotoxicity in BT549 cells at 20 μM and 30 μM, respectively. Moreover, these compounds blocked the migration of BT549 cells. In the MDA-MB-231 cell line, compound 18 exhibited high cytotoxicity and can block cell migration for 24 h. Molecular docking study with synthesized novel compounds was performed by Glide/SP method against SphK1 drug target. Furthermore, molecular dynamics (MD) simulation was carried out for the compounds 12–14 and 18. The compounds 13 and 14 may be potential inhibitor candidates in place of a reference inhibitor. A pharmacophore model was generated with the most potent compound 14, and the approved drugs were screened using the modules of Discovery Studio to find similar drugs. Consequently, this comprehensive study encompassing design, synthesis, in vitro and in silico analyses were correlated with the structure-activity relationship between compounds. The findings have the potential to unveil promising drug candidates for future studies. Communicated by Ramaswamy H. Sarma
Pulsed squeezed vacuum characterization without homodyning
Creators: name: Wenger, J.
name: Fiurasek, J.
name: Tualle-Brouri, R.
name: Cerf, N. J.
name: Grangier, Ph.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Direct photon detection is experimentally implemented to measure the squeezing and purity of a single-mode squeezed vacuum state without an interferometric homodyne detection. Following a recent theoretical proposal [arXiv quant-ph/0311119], the setup only requires a tunable beamsplitter and a single-photon detector to fully characterize the generated Gaussian states. The experimental implementation of this procedure is discussed and compared with other reference methods.
description: 8 pages, 7 figures
Molecular Hydrogen in Damped Ly-alpha Systems: Spatial Distribution
Creators: name: Hirashita, H.
name: Ferrara, A.
name: Wada, K.
name: Richter, P.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: To interpret H_2 quasar absorption line observations in Damped Ly-alpha clouds (DLAs), we model the H_2 spatial distribution within a DLA. Based on numerical simulations of disk structures with parameters similar to those derived for such absorbers, we calculate the H_2 distribution as a function of ultraviolet background (UVB) intensity and dust-to-gas ratio. For typical values of these two quantities we find that the area in which the H_2 fraction exceeds 10^{-6} (typical observational detection limit) only covers $\la 10$% of the disk surface, i.e. H_2 has a very inhomogeneous, clumpy distribution even at these low abundance levels. This explains the relative paucity of H_2 detections in DLAs. We also show the dependence of the covering fraction of H_2 on dust-to-gas ratio and UVB intensity and we comment on the physics governing the H_2 chemical network at high redshift.
description: 5 pages, 3 figures, 1 table, accepted by MNRAS Letter
Normalized Ricci flow on Riemann surfaces and determinants of Laplacian
Creators: name: Kokotov, A.
name: Korotkin, D.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Spectral Theory (math.SP)
subject: FOS: Mathematics

description: In this note we give a simple proof of the fact that the determinant of Laplace operator in smooth metric over compact Riemann surfaces of arbitrary genus $g$ monotonously grows under the normalized Ricci flow. Together with results of Hamilton that under the action of the normalized Ricci flow the smooth metric tends asymptotically to metric of constant curvature for $g\geq 1$, this leads to a simple proof of Osgood-Phillips-Sarnak theorem stating that that within the class of smooth metrics with fixed conformal class and fixed volume the determinant of Laplace operator is maximal on metric of constant curvatute.
description: a reference to paper math.DG/9904048 by W.Mueller and K.Wendland where the main theorem of this paper was proved a few years earlier is added
Quasiparticles states for integer- and fractional-charged electron wave packets
Creators: name: Yue, X. K.
name: Yin, Y.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: It is well-known that Lorentzian voltage pulses with integer quantum flux can lead to noiseless current in quantum conductors. The current is carried by charged quasiparticles in the Fermi sea of the conductors, which have well-defined wave functions and have been named as "levitons". However, it is not clear how levitons evolve as the flux of the pulses changes continuously toward a fractional value. To answer this question, we introduce a set of Wannier-like single-body wave functions, which can be used to describe the quantum states of the quasiparticles injected by Lorentzian pulses with arbitrary flux. We show that, by tuning the flux of the pulses, levitons can evolve into quasiparticles carrying fractional charges. In the meantime, additional fractional-charged quasiparticles can also be excited, which can form neutral electron-hole pairs. The information of these quasiparticles can be extracted from the shot noise of the current. These knowledge can be helpful for the time-resolved quantum control of propagating electrons in solid-state circuits.
Broadening the scope of WEE1 inhibitors: identifying novel drug candidates via computational approaches and drug repurposing
Creators: name: Chandrasekaran, Jaikanth
name: Sivakumaresan, Yogeetha
name: Shankar, Keerthika
name: Dickson, Melphiya
name: kumar, Shruthi Laya Saravana
name: Ramanathan, Lalitha
name: Ahmad, Iqrar
name: Patel, Harun
Publisher: name: Taylor & Francis
Year: 2023
Subjects: Biophysics
Biochemistry
Medicine
Pharmacology
Biotechnology
Chemical Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Information Systems not elsewhere classified
Cancer

description: The protein kinase Wee1 plays a vital role in the G2/M cell cycle checkpoint activation, triggered by double-stranded DNA disruptions. It fulfills this task by phosphorylating and consequently deactivating the cyclin B linked to Cdk1/Cdc2 at the Tyr15 residue, leading to a G2 cell cycle halt and subsequent delay of mitosis post DNA damage. Despite advancements, only the Wee1 inhibitor MK1775 has made it to Phase II clinical trials, presenting a challenge in innovative chemical structure development for small molecule discovery. To navigate this challenge, we employed an e-pharmacophore model of the MK1775-WEE1 complex (PDB ID: 5V5Y), using in silico screening of FDA-approved drugs. We chose six drugs for analog creation, guided by docking scores, key residue interactions, and ligand occupancy. Utilizing the ‘DrugSpaceX’ database, we generated 2,776 analogues via expert-defined transformations. Our findings identified DE90612 as the top-ranked analogue, followed by DE363106, DE489678, DE395383, DE90548, DE689343, DE395019, and DE538066. These analogues introduced unique structures not found in other databases. A t-SNE structurally diversified distribution map unveiled promising transformations linked to Temozolomide for WEE1 inhibitor development. Simulations of the WEE1-DE90612 complex (a Temozolomide analogue) for 200 nanoseconds demonstrated stability, with DE90612 forging robust bonds with active site residues and sustaining vital contacts at ASN376 and CYS379. These results underscore DE90612's potential inhibitory properties at the WEE1 binding site, warranting additional in vitro and in vivo exploration for its anticancer activity. Our approach outlines a promising pathway for creating diverse WEE1 inhibitors with suitable biological properties for potential oncology therapeutics. Communicated by Ramaswamy H. Sarma
Materials Handling in Public Refrigerated Warehouses
Creators: name: Allegri, Theodore H.
name: Herrick, Joseph F.
name: Allegri, Theodore H.
name: Herrick, Joseph F.
Publisher: name: Unknown
Year: 1957
Subjects: Labor and Human Capital
Productivity Analysis
Research Methods/ Statistical Methods

description: Excerpts from the report Preface: Large advances in productivity are sometimes achieved by revolutionary techniques; but small increments of improvement, in method and devices, have a cumulative effect that often outweighs the more spectacular innovations. Since public refrigerated warehouses are the concentration points for millions of tons of commodities each year, many man-hours are expended in handling this huge volume. Improvements in handling techniques resulting in increased labor productivity are of great benefit to producer, warehouseman, distributor, and consumer when adopted throughout the industry. This report, one of a series on handling food, was developed primarily to guide operators of public refrigerated warehouses in reducing the labor and costs required for various physical handling and warehouse operations. It outlines some of the methods for obtaining increased productivity while minimizing worker fatigue. Although it deals with refrigerated warehouses, the results of the study are applicable to other types of warehousing. The report is intended as a manual or guide for plant managers and other supervisory workers. Therefore, the methods, types of equipment used, and conditions influencing their use are described in considerable detail.
Spectroscopic evidence for electron-boson coupling in electron-doped Sr$_2$IrO$_4$
Creators: name: Hu, Yong
name: Chen, Xiang
name: Peng, S. -T.
name: Lane, C.
name: Matzelle, M.
name: Sun, Z. -L.
name: Hashimoto, M.
name: Lu, D. -H.
name: Schwier, E. F.
name: Arita, M.
name: Wu, T.
name: Markiewicz, R. S.
name: Shimada, K.
name: Chen, X. -H.
name: Shen, Z. -X.
name: Bansil, A.
name: Wilson, S. D.
name: He, J. -F.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Materials Science (cond-mat.mtrl-sci)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: The pseudogap, d-wave superconductivity and electron-boson coupling are three intertwined key ingredients in the phase diagram of the cuprates. Sr$_2$IrO$_4$ is a 5d-electron counterpart of the cuprates in which both the pseudogap and a d-wave instability have been observed. Here, we report spectroscopic evidence for the presence of the third key player in electron-doped Sr$_2$IrO$_4$: electron-boson coupling. A kink in nodal dispersion is observed with an energy scale of ~50 meV. The strength of the kink changes with doping, but the energy scale remains the same. These results provide the first noncuprate platform for exploring the relationship between the pseudogap, d-wave instability and electron-boson coupling in doped Mott insulators.
MOESM16 of The complete mitochondrial genome of Taxus cuspidata (Taxaceae): eight protein-coding genes have transferred to the nuclear genome
Creators: name: Kan, Sheng-Long
name: Shen, Ting-Ting
name: Gong, Ping
name: Ran, Jin-Hua
name: Wang, Xiao-Quan
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 16: Table S8. Comparison of the predicted (by PREP) and observed RNA editing sites in the sampled gymnosperm mitogenomes.
Additional file 1 of Improving screening and management of latent tuberculosis infection: development and evaluation of latent tuberculosis infection primary care model
Creators: name: Kunin, Marina
name: Timlin, Mark
name: Lemoh, Chris
name: Sheffield, David A.
name: Russo, Alana
name: Hazara, Shegofa
name: McBride, Jacqueline
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Science Policy
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. Patient Education Resource Pack.