cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Text Clustering with Large Language Model Embeddings
Creators: name: Petukhova, Alina
name: Matos-Carvalho, João P.
name: Fachada, Nuno
Publisher: name: arXiv
Year: 2024
Subjects: subject: Computation and Language (cs.CL)
subject: Artificial Intelligence (cs.AI)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences
subject: I.2.6; I.2.7; I.7.m
subject: 68T50 (Primary), 62H30 (Secondary)

description: Text clustering is an important method for organising the increasing volume of digital content, aiding in the structuring and discovery of hidden patterns in uncategorised data. The effectiveness of text clustering largely depends on the selection of textual embeddings and clustering algorithms. This study argues that recent advancements in large language models (LLMs) have the potential to enhance this task. The research investigates how different textual embeddings, particularly those utilised in LLMs, and various clustering algorithms influence the clustering of text datasets. A series of experiments were conducted to evaluate the impact of embeddings on clustering results, the role of dimensionality reduction through summarisation, and the adjustment of model size. The findings indicate that LLM embeddings are superior at capturing subtleties in structured language. OpenAI's GPT-3.5 Turbo model yields better results in three out of five clustering metrics across most tested datasets. Most LLM embeddings show improvements in cluster purity and provide a more informative silhouette score, reflecting a refined structural understanding of text data compared to traditional methods. Among the more lightweight models, BERT demonstrates leading performance. Additionally, it was observed that increasing model dimensionality and employing summarisation techniques do not consistently enhance clustering efficiency, suggesting that these strategies require careful consideration for practical application. These results highlight a complex balance between the need for refined text representation and computational feasibility in text clustering applications. This study extends traditional text clustering frameworks by integrating embeddings from LLMs, offering improved methodologies and suggesting new avenues for future research in various types of textual analysis.
description: The peer-reviewed version of this paper is published in the International Journal of Cognitive Computing in Engineering at https://doi.org/10.1016/j.ijcce.2024.11.004. This version is typeset by the authors and differs only in pagination and typographical detail
Nematopus nervosus Laporte 1832
Creators: name: Brailovsky, Harry
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Coreidae
Nematopus
Nematopus nervosus

description: Nematopus nervosus Laporte, 1832
(Fig. 8)
Nematopus nervosus Laporte, 1832: 30.
Material examined. FRENCH GUIANA: 4 ♁♁ 3 ♀♀, Point de vue du Belvedere de Saül, 250 m a.s.l., 3°37 ′ 22 ″ N 53°12 ′ 34 ″ W, 30.xi.2010, 4.–17.i.2011, 30.xi.2011, 10.–24.xii.2011, S. Brulle, P. H. Dalens, and S. Fernandez (MNHN, UNAM); 6 ♁♁ 3 ♀♀, Montagne des Cheveaux, 20 m a.s.l., window trap, 04°43 ′ 0.12 ″ N 52°25 ′ 0.12 ″ W, 11.–18.ix.2011, 8.iv.2012, 27.v.2012, 29.vii.2012, 3.xi.2012, 20.i.2013, 16.–27.ii.2013, S. Brulle, P.H. Dalens and S. Fernandez (MNHN, UNAM); 1 ♁, Amazon Nature Lodge, 30 km SE Roura on Kaw Road, 300 m a.s.l., 04°33 ′ 57 ″ N 05°12 ′ 43 ″ W, 18.–23.iv.2007, J. E. Eger (FSCA); 1 ♁, ca 10 km E. Cayenne, 51 m a.s.l., 04°53 ′ 23 ″ N 05°15 ′ 74 ″ W, 6.vi.2005, J. E. Eger and M. T. Messenger (FSCA); 1 ♀, EntomoTech Lodge, 30 km SE Roura on Kaw Road, 300 m a.s.l., 04°33 ′ N 05°12 ′ W, 1.–12.xii.2002, J. E. Eger (FSCA); 2 ♁♁ 3 ♀♀, 14 km E of N2 on road to Degrad Correze, 108 m a.s.l., 04°29 ′ N 05°20 ′ W, 6.xii.2002, J. E. Eger (FSCA).
Diagnosis. It is easily distinguished from other French Guianese species of Nematopus by having the antennal segment I reddish brown, and II to IV dark castaneous orange; triangular process of pronotum broad, apically rounded; pronotal disk shiny reddish brown to black with metallic bluish sheen (collar, posterolateral margin, triangular process and posterior margin yellow); abdominal sterna III to VII reddish brown with bluish sheen, and pleural margins yellow; humeral angles barely exposed, apically almost rounded.
Distribution. Brazil, Colombia, French Guiana, Guyana, Panama, Suriname (AMYOT & SERVILLE 1843, STÅL 1870, WALKER 1871, DISTANT 1893, PACKAUSKAS 2010). In French Guiana cited only from Cayenne (WALKER 1871).
description: Published as part of Brailovsky, Harry, 2015, The genus Nematopus (Hemiptera: Heteroptera: Coreidae) of French Guiana with a description of one new species, pp. 39-45 in Acta Entomologica Musei Nationalis Pragae (suppl.) (suppl.) 55 (1) on pages 44-45, DOI: 10.5281/zenodo.4468281
Deltoplastis Meyrick 1925
Creators: name: Das, Apurva
name: Pathania, Prakash C.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Deltoplastis

description: Genus Deltoplastis Meyrick, 1925: 228
Type species: Onebala ocreata Meyrick, 1910b, by original designation
description: Published as part of Das, Apurva, Pathania, Prakash C. & Singh, Navneet, 2022, A catalogue of Indian Lecithoceridae (Lepidoptera: Gelechioidea), pp. 56-78 in Zootaxa 5165 (1) on page 71, DOI: 10.11646/zootaxa.5165.1.2, http://zenodo.org/record/6825526
Federated Bayesian Deep Learning: The Application of Statistical Aggregation Methods to Bayesian Models
Creators: name: Fischer, John
name: Orescanin, Marko
name: Loomis, Justin
name: McClure, Patrick
Publisher: name: arXiv
Year: 2024
Subjects: subject: Machine Learning (cs.LG)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: Federated learning (FL) is an approach to training machine learning models that takes advantage of multiple distributed datasets while maintaining data privacy and reducing communication costs associated with sharing local datasets. Aggregation strategies have been developed to pool or fuse the weights and biases of distributed deterministic models; however, modern deterministic deep learning (DL) models are often poorly calibrated and lack the ability to communicate a measure of epistemic uncertainty in prediction, which is desirable for remote sensing platforms and safety-critical applications. Conversely, Bayesian DL models are often well calibrated and capable of quantifying and communicating a measure of epistemic uncertainty along with a competitive prediction accuracy. Unfortunately, because the weights and biases in Bayesian DL models are defined by a probability distribution, simple application of the aggregation methods associated with FL schemes for deterministic models is either impossible or results in sub-optimal performance. In this work, we use independent and identically distributed (IID) and non-IID partitions of the CIFAR-10 dataset and a fully variational ResNet-20 architecture to analyze six different aggregation strategies for Bayesian DL models. Additionally, we analyze the traditional federated averaging approach applied to an approximate Bayesian Monte Carlo dropout model as a lightweight alternative to more complex variational inference methods in FL. We show that aggregation strategy is a key hyperparameter in the design of a Bayesian FL system with downstream effects on accuracy, calibration, uncertainty quantification, training stability, and client compute requirements.
description: 22 pages, 9 figures
MOESM3 of Emerging knock-down resistance in Anopheles arabiensis populations of Dakar, Senegal: first evidence of a high prevalence of kdr-e mutation in West African urban area
Creators: name: Ndiath, Mamadou
name: Cailleau, Aurélie
name: Orlandi-Pradines, Eve
name: Bessell, Paul
name: Fréderic Pagès
name: Jean-François Trape
name: Rogier, Christophe
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 3. Mortality predicted in the model for each genotype at each site, for each insecticide, each year. Several genotypes were not found at some sites; in particular, the SW genotype was found only in Yarakh.
Fourier Galerkin approximation of mean field control problems
Creators: name: Delarue, François
name: Martini, Mattia
Publisher: name: arXiv
Year: 2024
Subjects: subject: Optimization and Control (math.OC)
subject: Analysis of PDEs (math.AP)
subject: Probability (math.PR)
subject: FOS: Mathematics
subject: 49N80, 49L12, 35Q93, 42B05

description: The purpose of this work is to provide a finite dimensional approximation of the solution to a mean field optimal control problem set on the $d$-dimensional torus. The approximation is obtained by means of a Fourier-Galerkin method, the main principle of which is to convolve probability measures on the torus by the Dirichlet kernel or, equivalently, to truncate the Fourier expansion of probability measures on the torus. However, this operation has the main feature not to leave the space of probability measures invariant, which drawback is know as \textit{Gibbs}' phenomenon. In spite of this, we manage to prove that, for initial conditions in the `interior' of the space of probability measures and for sufficiently large levels of truncation, the Fourier-Galerkin method induces a new finite dimensional control problem whose trajectories take values in the space of probability measures with a finite number of Fourier coefficients. Our main result asserts that, whenever the cost functionals are smooth and convex, the distance between the optimal trajectories of the original and approximating control problems decreases at a polynomial rate as the index of truncation in the Fourier-Galerkin method tends to $\infty$. A similar result holds for the distance between the corresponding value functions. From a practical point of view, our approach provides an efficient strategy to approximate mean field control optimizers by finite dimensional parameters and opens new perspectives for the numerical analysis of mean field control problems. It may be also applied to discretize more general mean field game systems.
Clevelandella panesthiae
Creators: name: Kotyk, Michael
name: Bourland, William A.
name: Soviš, Matyáš
name: Méndez-Sánchez, Daniel
name: Škaloud, Pavel
name: Varadínová, Zuzana Kotyková
name: Čepička, Ivan
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Chromista
Ciliophora
Heterotrichea
Heterotrichida
Clevelandellidae
Clevelandella
Clevelandella panesthiae

description: Clevelandella panesthiae (Kidder, 1937)
(Figs 32–34; Supporting Information, Tables S43–S47; Video S1)
Three populations (ASS, PAA, and STH) were morphologically characterized by both in vivo observations and in protargol preparations and two (PAC and PT) only in vivo. When present, the ciliate was highly abundant.
Description based on ASS, PAA, STH, PAC, and PT populations: Large-sized Clevelandella (on average 133 × 62 µm in vivo, range 109–168 × 43–84 µm; on average 114 × 56 µm in protargol preparations, range 93–157 × 39–89 µm). Broadly spade-shaped, distinct left-sided notch inconspicuous (Figs 32A, 34D, E) or absent (Figs 32B–E, 34A, B). Macronucleus relatively large, slender, inverted teardrop-shape, obliquely oriented in right half of body proper, chromatin finely granular, karyophore not clearly identified in vivo or in protargol preparations. Micronucleus ellipsoidal (about 4.5 × 2 µm). Somatic cilia limited to approximately anterior 60% of cell. Right sutural kinetofragments absent. Circumperistomial kineties only sparsely ciliated (Figs 32A, 34B). Adoral zone extends about 60% of cell length on average, composed of an average of 47 membranelles (range 42–52). Paroral membrane not studied.
description: Published as part of Kotyk, Michael, Bourland, William A., Soviš, Matyáš, Méndez-Sánchez, Daniel, Škaloud, Pavel, Varadínová, Zuzana Kotyková & Čepička, Ivan, 2024, Morphology maưers: congruence of morphology and phylogeny in the integrative taxonomy of Clevelandellidae (Ciliophora: Armophorea) with description of six new species, pp. 1-51 in Zoological Journal of the Linnean Society 202 (1) on page 30, DOI: 10.1093/zoolinnean/zlad154, http://zenodo.org/record/14541981
Deltoplastis balanitis Onebala
Creators: name: Das, Apurva
name: Pathania, Prakash C.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Deltoplastis
Deltoplastis balanitis

description: 119. Deltoplastis balanitis (Meyrick, 1910b: 452) (Onebala)
Type locality: India, Tamil Nadu, Palni Hills
Distribution: Indian records: Tamil Nadu.
description: Published as part of Das, Apurva, Pathania, Prakash C. & Singh, Navneet, 2022, A catalogue of Indian Lecithoceridae (Lepidoptera: Gelechioidea), pp. 56-78 in Zootaxa 5165 (1) on page 71, DOI: 10.11646/zootaxa.5165.1.2, http://zenodo.org/record/6825526
Additional file 2: of Hepatoprotective activity of Lepidium sativum seeds against D-galactosamine/lipopolysaccharide induced hepatotoxicity in animal model
Creators: name: Raish, Mohammad
name: Ahmad, Ajaz
name: Alkharfy, Khalid
name: Ahamad, Syed
name: Mohsin, Kazi
name: Al-Jenoobi, Fahad
name: Al-Mohizea, Abdullah
name: Ansari, Mushtaq
Publisher: name: Figshare
Year: 2016
Subjects: subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Marine Biology
subject: Cancer

description: Supplementary data file 2. (DOCX 12Â kb)
Nematopus Berthold 1827
Creators: name: Brailovsky, Harry
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Coreidae
Nematopus

description: Key to the species of Nematopus known from French Guiana
1 Antennal segment IV black with yellow ring near basal third; antennal segments II and III black with basal joint yellow; connexivum shiny orange; abdominal sterna III to VII shiny orange; male genital capsule and female genital plates black (Fig. 7). ................... ................................................................................................ N. indus (Linnaeus, 1758)
– Not with this combination of characters. ....................................................................... 2
2 Fore and middle femora shiny reddish brown; hind femur shiny reddish brown to black; humeral angles barely exposed, rounded (Fig. 8). ............... N. nervosus Laporte, 1832
– Fore and middle femora yellow with pale green sheen; hind femur yellow with pale green sheen, and with or without posterior third brown; humeral angles conspicuosly expanded into medium size spine directed outward, and clearly upward, (Fig. 9). .......... ....................................................................................................... N. persuasus sp. nov.
description: Published as part of Brailovsky, Harry, 2015, The genus Nematopus (Hemiptera: Heteroptera: Coreidae) of French Guiana with a description of one new species, pp. 39-45 in Acta Entomologica Musei Nationalis Pragae (suppl.) (suppl.) 55 (1) on page 45, DOI: 10.5281/zenodo.4468281
MOESM2 of Emerging knock-down resistance in Anopheles arabiensis populations of Dakar, Senegal: first evidence of a high prevalence of kdr-e mutation in West African urban area
Creators: name: Ndiath, Mamadou
name: Cailleau, Aurélie
name: Orlandi-Pradines, Eve
name: Bessell, Paul
name: Fréderic Pagès
name: Jean-François Trape
name: Rogier, Christophe
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Evolutionary Biology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 2. Insecticide-induced mortality of mosquitoes in Pikine, Yarakh and Almadies, with 95% confidence intervals. “Sens.” indicates sensitivity (mortality >98%), “I.T.” indicates increased tolerance (mortality 80–98%), “Res.” indicates resistance (mortality <80%).
Antimicrobial drug use and the risk of glioma: A case–control study
Creators: name: Haedenkamp, Tareq M.
name: Leitzmann, Michael F.
name: Linker, Ralf A.
name: Meier, Christoph
name: Becker, Claudia
name: Jick, Susan
name: Hau, Peter
name: Seliger, Corinna
Publisher: name: Universität Regensburg
Year: 2022
Subjects: subject: antibiotics, antifungals, case–control study, glioma, infectious disease
subject: 610 Medizin

description: Background
The use of antibiotics has been associated with increased risks of various cancers. Comprehensive information on the association of antibiotic use with the risk of glioma is lacking.
Methods
We performed a large case–control study based on the Clinical Practice Research Datalink (CPRD) GOLD from the United Kingdom. We identified 4423 glioma cases recorded between 1995 and 2020 and matched them to controls (1:10) on the date of diagnosis (i.e., the index date), age, sex, general practice, and number of years of medical history in the database prior to the index date. We conducted conditional logistic regression analyses to calculate odds ratios (ORs) with 95% confidence intervals (CIs). The exposures of interest were the use of antimicrobial drugs, including antibacterial, antiviral, antifungal, antiprotozoal, and anthelmintic drugs with specific subclasses, where possible.
Results
We found no substantially increased risk of glioma after ever-use of antibiotics (OR 1.13, 95% CI 1.03–1.24). The risk did not increase with the increasing number of prescriptions received or with increasing time from first use to cancer diagnosis. The use of polyenes was associated with a weakly decreased risk of glioma (OR 0.81, 95% CI 0.67–0.96).
Deltoplastis caduca Onebala
Creators: name: Das, Apurva
name: Pathania, Prakash C.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Deltoplastis
Deltoplastis caduca

description: 120. Deltoplastis caduca (Meyrick, 1910b: 454) (Onebala)
Type locality: India, Assam, Khasis [Now in Meghalaya]
Distribution: Indian records: Meghalaya.
description: Published as part of Das, Apurva, Pathania, Prakash C. & Singh, Navneet, 2022, A catalogue of Indian Lecithoceridae (Lepidoptera: Gelechioidea), pp. 56-78 in Zootaxa 5165 (1) on page 71, DOI: 10.11646/zootaxa.5165.1.2, http://zenodo.org/record/6825526
Deltoplastis causidica Onebala
Creators: name: Das, Apurva
name: Pathania, Prakash C.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Deltoplastis
Deltoplastis causidica

description: 121. Deltoplastis causidica (Meyrick, 1910b: 451) (Onebala)
Type locality: India, Assam, Khasis [Now in Meghalaya]
Distribution: Indian records: Meghalaya. Global records: China, Thailand, Vietnam.
description: Published as part of Das, Apurva, Pathania, Prakash C. & Singh, Navneet, 2022, A catalogue of Indian Lecithoceridae (Lepidoptera: Gelechioidea), pp. 56-78 in Zootaxa 5165 (1) on page 71, DOI: 10.11646/zootaxa.5165.1.2, http://zenodo.org/record/6825526
Additional file 1: of Communication tools for end-of-life decision-making in the intensive care unit: a systematic review and meta-analysis
Creators: name: Oczkowski, Simon
name: Han-Oh Chung
name: Hanvey, Louise
name: Mbuagbaw, Lawrence
name: You, John
Publisher: name: Figshare
Year: 2016
Subjects: subject: Molecular Biology
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: Appendix: Electronic search strategies. (DOC 72 kb)
MOESM2 of Characterization and optimization of the haemozoin-like crystal (HLC) assay to determine Hz inhibiting effects of anti-malarial compounds
Creators: name: Tempera, Carolina
name: Franco, Ricardo
name: Caro, Carlos
name: Vânia André
name: Eaton, Peter
name: Burke, Peter
name: Hänscheid, Thomas
Publisher: name: Figshare
Year: 2015
Subjects: subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences

description: Additional file 2: Results from different Medium conditions after 5-7 days of incubation.
Masked Autoencoders are PDE Learners
Creators: name: Zhou, Anthony
name: Farimani, Amir Barati
Publisher: name: arXiv
Year: 2024
Subjects: subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: Neural solvers for partial differential equations (PDEs) have great potential to generate fast and accurate physics solutions, yet their practicality is currently limited by their generalizability. PDEs evolve over broad scales and exhibit diverse behaviors; predicting these phenomena will require learning representations across a wide variety of inputs which may encompass different coefficients, boundary conditions, resolutions, or even equations. As a step towards generalizable PDE modeling, we adapt masked pretraining for physics problems. Through self-supervised learning across PDEs, masked autoencoders can consolidate heterogeneous physics to learn rich latent representations. We show that learned representations can generalize to a limited set of unseen equations or parameters and are meaningful enough to regress PDE coefficients or the classify PDE features. Furthermore, conditioning neural solvers on learned latent representations can improve time-stepping and super-resolution performance across a variety of coefficients, discretizations, or boundary conditions, as well as on certain unseen PDEs. We hope that masked pretraining can emerge as a unifying method across large, unlabeled, and heterogeneous datasets to learn latent physics at scale.
description: 29 pages, 9 figures
title: High-throughput Selection of Human de novo-emerged sORFs with High Folding Potential
Creators: name: Aubel, Margaux
name: Buchel, Filip
name: Heames, Brennen
name: Jones, Alun
name: Honc, Ondrej
name: Bornberg-Bauer, Erich
name: Hlouchova, Klara
Publisher: name: University of Muenster, Institutional Repository MIAMI
Year: 2024
Subjects: subject: 570 Biology

description: De novo genes emerge from previously noncoding stretches of the genome. Their encoded de novo proteins are generally expected to be similar to random sequences and, accordingly, with no stable tertiary fold and high predicted disorder. However, structural properties of de novo proteins and whether they differ during the stages of emergence and fixation have not been studied in depth and rely heavily on predictions. Here we generated a library of short human putative de novo proteins of varying lengths and ages and sorted the candidates according to their structural compactness and disorder propensity. Using Förster resonance energy transfer combined with Fluorescence-activated cell sorting, we were able to screen the library for most compact protein structures, as well as most elongated and flexible structures. We find that compact de novo proteins are on average slightly shorter and contain lower predicted disorder than less compact ones. The predicted structures for most and least compact de novo proteins correspond to expectations in that they contain more secondary structure content or higher disorder content, respectively. Our experiments indicate that older de novo proteins have higher compactness and structural propensity compared with young ones. We discuss possible evolutionary scenarios and their implications underlying the age-dependencies of compactness and structural content of putative de novo proteins.
Deltoplastis coercita Onebala
Creators: name: Das, Apurva
name: Pathania, Prakash C.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Deltoplastis
Deltoplastis coercita

description: 122. Deltoplastis coercita (Meyrick, 1923 c: 42) (Onebala)
Type locality: India, Karnataka, Coorg
Distribution: Indian records: Karnataka.
description: Published as part of Das, Apurva, Pathania, Prakash C. & Singh, Navneet, 2022, A catalogue of Indian Lecithoceridae (Lepidoptera: Gelechioidea), pp. 56-78 in Zootaxa 5165 (1) on page 71, DOI: 10.11646/zootaxa.5165.1.2, http://zenodo.org/record/6825526
Lycosidae Sundevall 1833
Creators: name: Lu, Tian
name: Koh, Joseph K. H.
name: Zhang, Zhi-Sheng
name: Li, Shuqiang
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Lycosidae

description: Family Lycosidae Sundevall, 1833
Subfamily Lycosinae Sundevall, 1833
description: Published as part of Lu, Tian, Koh, Joseph K. H., Zhang, Zhi-Sheng & Li, Shuqiang, 2018, A new Ovia species (Araneae, Lycosidae) from Singapore, with the transfer of Pardosa alboannulata Yin et al., 1997, pp. 436-450 in Zootaxa 4527 (3) on page 437, DOI: 10.11646/zootaxa.4527.3.12, http://zenodo.org/record/2612240
MOESM4 of Characterization and optimization of the haemozoin-like crystal (HLC) assay to determine Hz inhibiting effects of anti-malarial compounds
Creators: name: Tempera, Carolina
name: Franco, Ricardo
name: Caro, Carlos
name: VĂ˘Nia AndrĂŠ
name: Eaton, Peter
name: Burke, Peter
name: HĂ¤Nscheid, Thomas
Publisher: name: Figshare
Year: 2015
Subjects: subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 4: Supporting information - Raman analysis of haemozoin-like crystals, natural and synthetic Hz and interactions with chloroquine.
Deltoplastis commatopa Meyrick 1932
Creators: name: Das, Apurva
name: Pathania, Prakash C.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Deltoplastis
Deltoplastis commatopa

description: 123. Deltoplastis commatopa Meyrick, 1932d: 205
Type locality: China, Taiwan
Distribution: Indian records: India. Global records: China (Taiwan), Vietnam.
description: Published as part of Das, Apurva, Pathania, Prakash C. & Singh, Navneet, 2022, A catalogue of Indian Lecithoceridae (Lepidoptera: Gelechioidea), pp. 56-78 in Zootaxa 5165 (1) on page 71, DOI: 10.11646/zootaxa.5165.1.2, http://zenodo.org/record/6825526
PDNNet: PDN-Aware GNN-CNN Heterogeneous Network for Dynamic IR Drop Prediction
Creators: name: Zhao, Yuxiang
name: Chai, Zhuomin
name: Jiang, Xun
name: Lin, Yibo
name: Wang, Runsheng
name: Huang, Ru
Publisher: name: arXiv
Year: 2024
Subjects: subject: Machine Learning (cs.LG)
subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: IR drop on the power delivery network (PDN) is closely related to PDN's configuration and cell current consumption. As the integrated circuit (IC) design is growing larger, dynamic IR drop simulation becomes computationally unaffordable and machine learning based IR drop prediction has been explored as a promising solution. Although CNN-based methods have been adapted to IR drop prediction task in several works, the shortcomings of overlooking PDN configuration is non-negligible. In this paper, we consider not only how to properly represent cell-PDN relation, but also how to model IR drop following its physical nature in the feature aggregation procedure. Thus, we propose a novel graph structure, PDNGraph, to unify the representations of the PDN structure and the fine-grained cell-PDN relation. We further propose a dual-branch heterogeneous network, PDNNet, incorporating two parallel GNN-CNN branches to favorably capture the above features during the learning process. Several key designs are presented to make the dynamic IR drop prediction highly effective and interpretable. We are the first work to apply graph structure to deep-learning based dynamic IR drop prediction method. Experiments show that PDNNet outperforms the state-of-the-art CNN-based methods and achieves 545x speedup compared to the commercial tool, which demonstrates the superiority of our method.
Clevelandellidae Kidder 1938
Creators: name: Kotyk, Michael
name: Bourland, William A.
name: Soviš, Matyáš
name: Méndez-Sánchez, Daniel
name: Škaloud, Pavel
name: Varadínová, Zuzana Kotyková
name: Čepička, Ivan
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Chromista
Ciliophora
Heterotrichea
Heterotrichida
Clevelandellidae

description: Family Clevelandellidae Kidder, 1938
Diagnosis: Small to large Armophorea with posteriorized oral structures. Adoral zone of membranelles on right and paroral membrane on left side of peristomium. Somatic ciliature hemitrichous (possibly except in Metaclevelandella). Excretion via an internal ciliated excretory antrum.
Type genus: Clevelandella Kidder, 1938.
Included genera: Anteclevelandella Pecina and Vďačný, 2022; Clevelandella Kidder, 1938; Metaclevelandella Uttangi and Desai, 1963; Paraclevelandia Kidder, 1937; Rhynchoclevelandella Pecina and Vďačný, 2022.
Remarks: Although Metaclevelandella termitis, not reported since its original description, was described as holotrichously ciliated, the possibility that incomplete ciliation was overlooked (as was the case in Kidder’s descriptions of Clevelandellida) cannot be excluded. This question can only be resolved by a thorough redescription.
description: Published as part of Kotyk, Michael, Bourland, William A., Soviš, Matyáš, Méndez-Sánchez, Daniel, Škaloud, Pavel, Varadínová, Zuzana Kotyková & Čepička, Ivan, 2024, Morphology maưers: congruence of morphology and phylogeny in the integrative taxonomy of Clevelandellidae (Ciliophora: Armophorea) with description of six new species, pp. 1-51 in Zoological Journal of the Linnean Society 202 (1) on page 47, DOI: 10.1093/zoolinnean/zlad154, http://zenodo.org/record/14541981
Biological abdominal wall expansion in pediatric liver recipients after transplantation with large‐for‐size organs
Creators: name: Goetz, Markus
name: Jurczyk, Maria
name: Grothues, Dirk
name: Knoppke, Birgit
name: Junger, Henrik
name: Melter, Michael
name: Schlitt, Hans J.
name: Brunner, Stefan M.
name: Brennfleck, Frank W.
Publisher: name: Universität Regensburg
Year: 2022
Subjects: subject: abdominal compartment syndrome, complications of liver transplantation, large-for-size grafts, pediatric liver transplantation, surgical complications
subject: 610 Medizin

description: Background
After pediatric split liver transplantation, intra-abdominal loss of domain due to large-for-size left lateral grafts is a frequent problem for fascial closure and potentially leads to reduced liver perfusion and abdominal compartment syndrome. Therefore, delayed fascial closure with the use of temporary silastic meshes and reoperation or alternative fascial bridging procedures are necessary.
Methods
Between March 2019 and October 2021, biologic meshes were used for abdominal wall expansion in 6 cases of pediatric split liver transplantation. These cases were analyzed retrospectively.
Results
One male and 5 female children with median age of 6 months (range: 0–57 months) and weight of 6 kg (range: 3.5–22 kg) received a large-for-size left lateral graft. Graft-to-recipient weight ratio (GRWR) was 4.8% (range: 1.5%–8.5%) in median. Biologic mesh implantation for abdominal wall expansion was done in median 7 days (range: 3–11 days) after transplantation when signs of abdominal compartment syndrome with portal vein thrombosis in 3 and of the liver artery in 1 case occurred. In 2 cases, bovine acellular collagen matrix and 4 cases ovine reinforced tissue matrix was used. Median follow-up was 12.5 months (range: 4–28 months) and showed good liver perfusion by sonography and normal corporal development without signs of ventral hernia. One patient died because of fulminant graft rejection and emergency re-transplantation 11 months after the initial transplantation.
Conclusions
Biologic meshes can be used as safe method for abdominal wall expansion to achieve fascial closure in large-for-size liver transplant recipients. Usage for primary fascial closure can be considered in selected patients.
Deltoplastis gypsopeda Meyrick 1934
Creators: name: Das, Apurva
name: Pathania, Prakash C.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Deltoplastis
Deltoplastis gypsopeda

description: 124. Deltoplastis gypsopeda Meyrick, 1934d: 514
Type locality: China, Mt. Omei
Distribution: Indian records: India. Global records: China, Nepal, Thailand.
description: Published as part of Das, Apurva, Pathania, Prakash C. & Singh, Navneet, 2022, A catalogue of Indian Lecithoceridae (Lepidoptera: Gelechioidea), pp. 56-78 in Zootaxa 5165 (1) on page 71, DOI: 10.11646/zootaxa.5165.1.2, http://zenodo.org/record/6825526
Semiresorbable biologic hybrid meshes for ventral abdominal hernia repair in potentially contaminated settings: lower risk of recurrence
Creators: name: Goetz, Markus
name: Jurczyk, Maria
name: Junger, Henrik
name: Schlitt, Hans J.
name: Brunner, Stefan M.
name: Brennfleck, Frank W.
Publisher: name: Universität Regensburg
Year: 2022
Subjects: subject: SYNTHETIC MESH; OUTCOMES; SUTURE; Incisional hernia; Abdominal wall reconstruction; Biologic mesh; Wound contamination
subject: 610 Medizin

description: In case of potential contamination, implantation of synthetic meshes in hernia and abdominal wall surgery is problematic due to a higher risk of mesh infection. As an alternative, a variety of different biologic meshes have been used. However, relevant data comparing outcome after implantation of these meshes are lacking. Between January 2012 and October 2021, biologic meshes were used for reconstruction of the abdominal wall in 71 patients with preoperative or intraoperative abdominal contamination. In this retrospective study, semiresorbable biologic hybrid meshes (BHM) and completely resorbable meshes (CRM) were compared and analyzed using a Castor EDC database. In 28 patients, semiresorbable biologic hybrid meshes were used; in 43 patients, completely resorbable meshes were used. Both groups showed no difference in age, gender, BMI, operation duration, hernia size and Charlson comorbidity index. The risk degree of surgical-site occurrences was graded according to the Ventral Hernia Working Group (VHWG) classification, and the median value was 3 (range 2-4) in the BHM group and 3 (range 2-4) in the CRM group. Hernia recurrence within 24 months after hernia repair was significantly lower in the BHM group (3.6% vs. 28.9%; p = 0.03), while postoperative complication rate, with respect to seromas in need of therapy (61.4% vs. 55.5%, p = 0.43) and operative revision (28.6% vs. 16.3%, p = 0.22) was not different in either group. Biologic hybrid meshes can be used safely in case of possible contamination. BHM seems to reduce the risk of hernia recurrence compared to completely resorbable biologic meshes, but this has to be investigated further.
MOESM2 of Polymyxin-B hemoperfusion in septic patients: analysis of a multicenter registry
Creators: name: Cutuli, Salvatore
name: Artigas, Antonio
name: Fumagalli, Roberto
name: Monti, Gianpaola
name: Ranieri, Vito
name: Ronco, Claudio
name: Antonelli, Massimo
Publisher: name: Figshare
Year: 2016
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 2: Figure S1. Kaplan-Meier cardiovascular responders vs cardiovascular non responders.
Deltoplastis horistis Onebala
Creators: name: Das, Apurva
name: Pathania, Prakash C.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Deltoplastis
Deltoplastis horistis

description: 125. Deltoplastis horistis (Meyrick, 1910b: 452) (Onebala)
Type locality: India, Assam, Khasis [Now in Meghalaya]
Distribution: Indian records: Meghalaya. Global records: China.
description: Published as part of Das, Apurva, Pathania, Prakash C. & Singh, Navneet, 2022, A catalogue of Indian Lecithoceridae (Lepidoptera: Gelechioidea), pp. 56-78 in Zootaxa 5165 (1) on page 71, DOI: 10.11646/zootaxa.5165.1.2, http://zenodo.org/record/6825526
Ovia alboannulata Lu & Koh & Zhang & Li 2018, comb. nov.
Creators: name: Lu, Tian
name: Koh, Joseph K. H.
name: Zhang, Zhi-Sheng
name: Li, Shuqiang
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Lycosidae
Ovia
Ovia alboannulata

description: Ovia alboannulata (Yin et al., 1997) comb. nov.
Figures 1, 4, 7, 10
Pardosa alboannulata Yin et al., 1997: 273, fig. 129a–d (male holotype from Tiantong Mountain Nature Reserve, Ningbo City, Zhejiang Prov., China, deposited in Hunan Normal University of China, unexamined); Song et al. 1999: 329, fig. 192Q (male).
Material examined. Topotypes: China, 5 males, Zhejiang Province, Ningbo City, Mt. Tiantong, 29°47′55′′N, 121°47′33′′E, 136 m, 13 May 2016, T. Lu leg. (SWUC). China, 3 males, Chongqing Municipality, Mt. Jinyun, Yunhe Administrative Station, 29°50′30′′ N, 106°21′30′′E, 248 m, 21 June 2008, L.Y. Wang leg. (SWUC); 2 males, Yunhe Administrative Station, 31 May 2014, X.W. Meng, T. Lu & J. Yang leg. (SWUC).
Remarks. Although we could not examine the holotype, we recognize this species from specimens collected from the type locality, which perfectly match the original description and illustration.
Diagnosis. The males of Ovia alboannulata can be recognized in the field by the white rings on the femora and tibiae II–IV. They can be easily distinguished from O. procurva (Figs 6 A–D, 9A–D, 12A–B) by a single, relatively slender apical claw on cymbium and the tip of terminal apophysis hiding behind the membranous, truncated tegular lobe in ventral view.
Description. Male. The general description and measurements of the male are given in Yin et al., 1997. Male pedipalp (Figs 1B, 4, 7): cymbium with a single, long apical claw. Palea slightly sclerotized, with a strongly hooked terminal apophysis. Embolus filiform and prolaterally originated, extending ventro-retrolaterally. A square membranous tegular lobe protecting the embolus and shielding the tip of terminal apophysis ventrally. Median apophysis transverse, with a ventrally directed spur and a prolateral hyperplasia.
Female. unknown.
Distribution. China (Zhejiang, Chongqing).
description: Published as part of Lu, Tian, Koh, Joseph K. H., Zhang, Zhi-Sheng & Li, Shuqiang, 2018, A new Ovia species (Araneae, Lycosidae) from Singapore, with the transfer of Pardosa alboannulata Yin et al., 1997, pp. 436-450 in Zootaxa 4527 (3) on page 437, DOI: 10.11646/zootaxa.4527.3.12, http://zenodo.org/record/2612240
Anteclevelandella Pecina and Vdacny 2022
Creators: name: Kotyk, Michael
name: Bourland, William A.
name: Soviš, Matyáš
name: Méndez-Sánchez, Daniel
name: Škaloud, Pavel
name: Varadínová, Zuzana Kotyková
name: Čepička, Ivan
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Chromista
Ciliophora
Heterotrichea
Heterotrichida
Clevelandellidae
Anteclevelandella

description: Genus Anteclevelandella Pecina and Vďačný, 2022
Diagnosis: Body elongate and nearly cylindrical, only slightly flattened dorsoventrally, constricted in the region of macronucleus. Macronucleus evenly ovoid, its long axis parallel to the transverse axis of the body. Peristomial projection inconspicuous, merges gradually with body proper.
Type species:
Clevelandia constricta Kidder, 1937.
Included species:
Anteclevelandella constricta (Kidder, 1937).
description: Published as part of Kotyk, Michael, Bourland, William A., Soviš, Matyáš, Méndez-Sánchez, Daniel, Škaloud, Pavel, Varadínová, Zuzana Kotyková & Čepička, Ivan, 2024, Morphology maưers: congruence of morphology and phylogeny in the integrative taxonomy of Clevelandellidae (Ciliophora: Armophorea) with description of six new species, pp. 1-51 in Zoological Journal of the Linnean Society 202 (1) on page 47, DOI: 10.1093/zoolinnean/zlad154, http://zenodo.org/record/14541981
Relapse in class II orthognathic surgery - a systematic review
Creators: name: Eckmüller, Stephanie
name: Paddenberg, Eva
name: Hiller, Karl-Anton
name: Proff, Peter
name: Knüttel, Helge
name: Kirschneck, Christian
Publisher: name: Universität Regensburg
Year: 2022
Subjects: subject: Orthognathic surgery, Stability, Class II, Systematic review
subject: 610 Medizin

description: Objectives
Relapse after orthognathic surgery seems to depend on diverse factors. Proffit et al. postulated in 2007 a “hierarchy of stability” (Head Face Med 6:66, 2007), ranking posttreatment stability after various orthognathic procedures, but no systematically reviewed evidence was provided. Therefore, the aim of this review was to investigate the extent of class II relapse in orthognathic surgery of Angle class II patients depending on the surgical procedure used.
Materials and methods
Seven databases were searched for randomized and controlled clinical trials to compare relapse in surgical procedures for Angle class II patients. After duplicate study selection, data extraction and risk of bias assessment were performed with the ROBINS-I tool as well as data synthesis by frequency distribution, followed by assessment of the quality of evidence with GRADE.
Results
Four non-randomized cohort-studies with a total of 132 patients were included. Bimaxillary procedures as well mandibular advancement procedures proved to be highly stable. Single jaw interventions at the maxilla achieved mostly stable results at sagittal dimension and problematic stability in the vertical dimension. However, there were only limited data available with low quality of evidence.
Conclusions
Limited existing evidence of low quality partly support the postulated hierarchy of stability of Proffit et al. (Head Face Med 6:66, 2007) and indicates that a surgical correction of class II dysgnathia with bimaxillary procedures and mandibular advancement seems to be highly stable. However, additional studies are needed to address the relation between relapse and surgical orthognathic intervention.
MOESM3 of Rodent-avoidance, topography and forest structure shape territory selection of a forest bird
Creators: name: Pasinelli, Gilberto
name: Grendelmeier, Alex
name: Gerber, Michael
name: RaphaĂŤl Arlettaz
Publisher: name: Figshare
Year: 2016
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 3. Modelling steps. Description of the three modelling steps (also see Fig.Â 3).
Deltoplastis leptobrocha Onebala
Creators: name: Das, Apurva
name: Pathania, Prakash C.
name: Singh, Navneet
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lecithoceridae
Deltoplastis
Deltoplastis leptobrocha

description: 126. Deltoplastis leptobrocha (Meyrick, 1923 c: 44) (Onebala)
Type locality: India, Karnataka, Coorg
Distribution: Indian records: Karnataka.
description: Published as part of Das, Apurva, Pathania, Prakash C. & Singh, Navneet, 2022, A catalogue of Indian Lecithoceridae (Lepidoptera: Gelechioidea), pp. 56-78 in Zootaxa 5165 (1) on page 71, DOI: 10.11646/zootaxa.5165.1.2, http://zenodo.org/record/6825526
Additional file 1: of Point-of-care testing in India: missed opportunities to realize the true potential of point-of-care testing programs
Creators: name: Engel, Nora
name: Ganesh, Gayatri
name: Mamata Patil
name: Vijayashree Yellappa
name: Vadnais, Caroline
name: Nitika Pai
name: Madhukar Pai
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology

description: Interview guide POC testing in India. (DOC 75 kb)
Additional file 3: Appendix A3. of Understanding the value of social networks in life satisfaction of elderly people: a comparative study of 16 European countries using SHARE data
Creators: name: Tomini, Florian
name: Tomini, Sonila
name: Groot, Wim
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy
subject: Computational Biology

description: First stage IV-2SLS regression on composition of network (Share of friends in the network). (DOCX 23Â kb)
Additional file 2: Table S2. of A chemosynthetic weed: the tubeworm Sclerolinum contortum is a bipolar, cosmopolitan species
Creators: name: Georgieva, Magdalena
name: Wiklund, Helena
name: Bell, James
name: Eilertsen, Mari
name: Mills, Rachel
name: Little, Crispin
name: Glover, Adrian
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: P-distance (above diagonal) and K2P (below diagonal) genetic distances (in %) among the genus, as well as putative, Sclerolinum. (DOCX 49Â kb)
Additional file 1: Table S1. of A study of vertebra number in pigs confirms the association of vertnin and reveals additional QTL
Creators: name: Rohrer, Gary
name: Nonneman, Dan
name: Wiedmann, Ralph
name: Schneider, James
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: All one megabase window associations explaining more than 0.4Â % of the genomic variation for a trait, the most significant SNP and parameters associated with the most significant SNP such as location (build 10.2), effect, standard error, model frequency and allele frequency of the B allele. (DOCX 46Â kb)
Additional file 1: Appendix A1. of Understanding the value of social networks in life satisfaction of elderly people: a comparative study of 16 European countries using SHARE data
Creators: name: Tomini, Florian
name: Tomini, Sonila
name: Groot, Wim
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Descriptive statistics. (DOCX 22Â kb)
Additional file 4: Table S2. of Bacterial calpains and the evolution of the calpain (C2) family of peptidases
Creators: name: Rawlings, Neil
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Key to sequences. The names of the 267 proteins, the species they are derived from, and the identifier used in Fig. 1 and Additional file 2: Figure S2 are given. The exponent from the expect value from the HMMER search is also shown (“E-value”). (DOCX 199 kb)