cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 2 of Investigating the impact of London’s ultra low emission zone on children’s health: children’s health in London and Luton (CHILL) protocol for a prospective parallel cohort study
Creators: name: Tsocheva, Ivelina
name: Scales, James
name: Dove, Rosamund
name: Chavda, Jasmine
name: Kalsi, Harpal
name: Wood, Helen E
name: Colligan, Grainne
name: Cross, Louise
name: Newby, Chris
name: Hall, Amy
name: Keating, Mia
name: Sartori, Luke
name: Moon, Jessica
name: Thomson, Ann
name: Tomini, Florian
name: Murray, Aisling
name: Hamad, Wasim
name: Tijm, Sarah
name: Hirst, Alice
name: Vincent, Britzer Paul
name: Kotala, Pavani
name: Balkwill, Frances
name: Mihaylova, Borislava
name: Grigg, Jonathan
name: Quint, Jennifer K
name: Fletcher, Monica
name: Mon-Williams, Mark
name: Wright, John
name: van Sluijs, Esther
name: Beevers, Sean
name: Randhawa, Gurch
name: Eldridge, Sandra
name: Sheikh, Aziz
name: Gauderman, William
name: Kelly, Frank
name: Mudway, Ian S
name: Griffiths, Christopher J
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Biotechnology
Environmental Sciences not elsewhere classified
Chemical Sciences not elsewhere classified
Science Policy

description: Supplementary table for Tables (PDF 38 kb)
sj-pdf-2-bji-10.1177_17571774211046887 – Supplemental Material for Mycobacterium tuberculosis infection and disease in healthcare workers in a tertiary referral hospital in Bandung, Indonesia
Creators: name: Apriani, Lika
name: McAllister, Susan
name: Sharples, Katrina
name: Nurul Aini, Isni
name: Nurhasanah, Hanifah
name: Ruslami, Rovina
name: Menzies, Dick
name: Hill, Philip C
name: Alisjahbana, Bachti
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 111708 Health and Community Services
subject: FOS: Health sciences
subject: 111099 Nursing not elsewhere classified
subject: 111799 Public Health and Health Services not elsewhere classified

description: Supplemental Material, sj-pdf-2-bji-10.1177_17571774211046887 for Mycobacterium tuberculosis infection and disease in healthcare workers in a tertiary referral hospital in Bandung, Indonesia by Lika Apriani and Susan McAllister in Journal of Infection Prevention
The Feynman Lectures in Haiku
Creators: name: Tamás Bogár, Ádám
Publisher: name: Cyberwit
Year: 2019
Subjects: subject: Poetry
subject: Twenty-first century
subject: English-speaking countries
subject: English poetry

description: A collection of 40 found haiku poems, all excerpted from The Feynman Lectures on Physics, Vol. III: Quantum Mechanics by Richard P. Feynman.
Primed decomposition tableaux and extended queer crystals
Creators: name: Marberg, Eric
name: Tong, Kam Hung
Publisher: name: arXiv
Year: 2023
Subjects: subject: Combinatorics (math.CO)
subject: Representation Theory (math.RT)
subject: FOS: Mathematics

description: Our previous work introduced a category of extended queer crystals, whose connected normal objects have unique highest weight elements and characters that are Schur $Q$-polynomials. The initial models for such crystals were based on semistandard shifted tableaux. Here, we introduce a simpler construction using certain "primed" decomposition tableaux, which slightly generalize the decomposition tableaux used in work of Grantcharov et al. This leads to a new, shorter proof of the highest weight properties of the normal subcategory of extended queer crystals. Along the way, we analyze a primed extension of Grantcharov et al.'s insertion scheme for decomposition tableaux.
description: 43 pages, 3 figures; v2: minor corrections, added exposition, new Section 3.6; v3: major revision to Section 3.6, incorporating missing references and adding new results on shifted plactic relations; v4: minor corrections, final version
sj-pdf-1-sax-10.1177_10790632211070804 – Supplemental Material for What Kind of Therapy Works with Juveniles Wwho Have Sexually Offended? A Randomized-Controlled Trial of Two Versions of a Specialized Cognitive -Behavioral Outpatient Treatment Program
Creators: name: Aebi, Marcel
name: Krause, Chiara
name: Barra, Steffen
name: Vogt, Gunnar
name: Vertone, Leonardo
name: Manetsch, Madleina
name: Imbach, Daniela
name: Endrass, Jérôme
name: Rossegger, Astrid
name: Schmeck, Klaus
name: Bessler, Cornelia
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 160299 Criminology not elsewhere classified
subject: FOS: Law
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental Material, sj-pdf-1-sax-10.1177_10790632211070804 for What Kind of Therapy Works with Juveniles Wwho Have Sexually Offended? A Randomized-Controlled Trial of Two Versions of a Specialized Cognitive -Behavioral Outpatient Treatment Program by Marcel Aebi, Chiara Krause, Steffen Barra, Gunnar Vogt, Leonardo Vertone, Madleina Manetsch, Daniela Imbach, Jérôme Endrass, Astrid Rossegger, Klaus Schmeck, and Cornelia Bessler in Sexual Abuse
Sampling probabilities, diffusions, ancestral graphs, and duality under strong selection
Creators: name: Favero, Martina
name: Jenkins, Paul A.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Probability (math.PR)
subject: Populations and Evolution (q-bio.PE)
subject: FOS: Mathematics
subject: FOS: Biological sciences
subject: Primary 60J90, Secondary 60J60, 92D15

description: Wright-Fisher diffusions and their dual ancestral graphs occupy a central role in the study of allele frequency change and genealogical structure, and they provide expressions, explicit in some special cases but generally implicit, for the sampling probability, a crucial quantity in inference. Under a finite-allele mutation model, with possibly parent-dependent mutation, we consider the asymptotic regime where the selective advantage of one allele grows to infinity, while the other parameters remain fixed. In this regime, we show that the Wright-Fisher diffusion can be approximated either by a Gaussian process or by a process whose components are independent continuous-state branching processes with immigration, aligning with analogous results for Wright-Fisher models but employing different methods. While the first process becomes degenerate at stationarity, the latter does not and provides a simple, analytic approximation for the leading term of the sampling probability. Furthermore, using another approach based on a recursion formula, we characterise all remaining terms to provide a full asymptotic expansion for the sampling probability. Finally, we study the asymptotic behaviour of the rates of the block-counting process of the conditional ancestral selection graph and establish an asymptotic duality relationship between this and the diffusion.
description: 44 pages
sj-docx-1-joh-10.1177_00207314221083871 - Supplemental material for Disclosure of Pharmaceutical Industry Funding of Patient Organisations in Nordic Countries: Can Industry Self-Regulation Deliver on its Transparency Promise?
Creators: name: Pashley, Dylan
name: Ozieranski, Piotr
name: Mulinari, Shai
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 111799 Public Health and Health Services not elsewhere classified
subject: FOS: Health sciences

description: Supplemental material, sj-docx-1-joh-10.1177_00207314221083871 for Disclosure of Pharmaceutical Industry Funding of Patient Organisations in Nordic Countries: Can Industry Self-Regulation Deliver on its Transparency Promise? by Dylan Pashley, Piotr Ozieranski and Shai Mulinari in International Journal of Health Services
Can a Machine Be a Gentleman? Machine Ethics and Ethical Machines
Creators: name: Tamás Bogár, Ádám
Publisher: name: Salem Press
Year: 2013
Subjects: subject: American fiction
subject: Literature--Philosophy
subject: Applied ethics
subject: History
subject: Computers
subject: Twentieth century
subject: American literature

description: Drawing upon the science-fictional elements of Vonnegut's work, Ádám T. Bogár asks whether a machine can be a gentleman as a way to approach the human-versus-machine dichotomy, which is explored in a number of Vonnegut's writings. For instance, the eponymous "hero" of the 1950 short story "EPICAC," one of Vonnegut's first publications, is a fictional heavy-duty supercomputer whose "personality" calls the classical hierarchy of human over machine into question. While machines with superhuman physical capabilities are pervasive in science fiction stories, computers morally superseding human are less easy to find. In this essay, Bogár reviews the human/machine relationship apparent in the short story, in Player Piano (which includes a computer named EPICAC XIV), and in other works. Drawing upon the ideas of British mathematician-cryptographer Alan Turing, Bogár considers how Turing's concerns about machine intelligence are embodied in Vonnegut's work, and discusses a possible world where these concerns have become reality.
sj-pdf-2-mpx-10.1177_17448069221079540 – Supplemental Material for Genetic basis of thermal nociceptive sensitivity and brain weight in a BALB/c reduced complexity cross
Creators: name: Beierle, Jacob A
name: Yao, Emily J
name: Goldstein, Stanley I
name: Scotellaro, Julia L
name: Sena, Katherine D
name: Linnertz, Colton A
name: Willits, Adam B
name: Kader, Leena
name: Young, Erin E
name: Peltz, Gary
name: Emili, Andrew
name: Ferris, Martin T
name: Bryant, Camron D
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: 111702 Aged Health Care
subject: FOS: Health sciences
subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: Neuroscience

description: Supplemental Material, sj-pdf-2-mpx-10.1177_17448069221079540 for Genetic basis of thermal nociceptive sensitivity and brain weight in a BALB/c reduced complexity cross by Jacob A Beierle, Emily J Yao, Stanley I Goldstein, Julia L Scotellaro, Katherine D Sena, Colton A Linnertz, Adam B Willits, Leena Kader, Erin E Young, Gary Peltz, Andrew Emili, Martin T Ferris and Camron D Bryant in Molecular Pain
Sharp Analysis of Power Iteration for Tensor PCA
Creators: name: Wu, Yuchen
name: Zhou, Kangjie
Publisher: name: arXiv
Year: 2024
Subjects: subject: Machine Learning (cs.LG)
subject: Numerical Analysis (math.NA)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences
subject: FOS: Mathematics

description: We investigate the power iteration algorithm for the tensor PCA model introduced in Richard and Montanari (2014). Previous work studying the properties of tensor power iteration is either limited to a constant number of iterations, or requires a non-trivial data-independent initialization. In this paper, we move beyond these limitations and analyze the dynamics of randomly initialized tensor power iteration up to polynomially many steps. Our contributions are threefold: First, we establish sharp bounds on the number of iterations required for power method to converge to the planted signal, for a broad range of the signal-to-noise ratios. Second, our analysis reveals that the actual algorithmic threshold for power iteration is smaller than the one conjectured in literature by a polylog(n) factor, where n is the ambient dimension. Finally, we propose a simple and effective stopping criterion for power iteration, which provably outputs a solution that is highly correlated with the true signal. Extensive numerical experiments verify our theoretical results.
description: 42 pages, 11 figures, added additional experiments
Books as Metaphors in The Martian Chronicles and Fahrenheit 451
Creators: name: Tamás Bogár, Ádám
Publisher: name: Salem Press
Year: 2017
Subjects: subject: Science fiction
subject: History
subject: Books
subject: American literature
subject: Twentieth century
subject: Culture--Study and teaching

description: Ádám T. Bogár examines the role of books in Fahrenheit 451 and The Martian Chronicles. It is a commonplace, of course, to note that books occupy a central place in Bradbury's famous novel of book burning, or even in his breakthrough book whose tales of Mars include, say, the Poe-based revenge-uponthe-small-minded of "Usher II." Bogár, however, looks at books not only as metaphors but also as something that creates a sense of comfortable domesticity and as something that, with the opening or closing of a Bible, for example, can punctuate a literary scene. In addition, the chapter also explores the physicality of Bradbury's books, draws connections between some of Bradbury's lyrical fancies, like the metal Martian book that sings when its raised lettering is stroked, and the postbook technology of our own world.
sj-pdf-1-ips-10.1177_01925121211061241 – Supplemental material for Multi-bilateral aid for disease control
Creators: name: Steele, Carie A
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 160607 International Relations
subject: FOS: Political science

description: Supplemental material, sj-pdf-1-ips-10.1177_01925121211061241 for Multi-bilateral aid for disease control by Carie A Steele in International Political Science Review
Additional file 3 of Investigating the impact of London’s ultra low emission zone on children’s health: children’s health in London and Luton (CHILL) protocol for a prospective parallel cohort study
Creators: name: Tsocheva, Ivelina
name: Scales, James
name: Dove, Rosamund
name: Chavda, Jasmine
name: Kalsi, Harpal
name: Wood, Helen E
name: Colligan, Grainne
name: Cross, Louise
name: Newby, Chris
name: Hall, Amy
name: Keating, Mia
name: Sartori, Luke
name: Moon, Jessica
name: Thomson, Ann
name: Tomini, Florian
name: Murray, Aisling
name: Hamad, Wasim
name: Tijm, Sarah
name: Hirst, Alice
name: Vincent, Britzer Paul
name: Kotala, Pavani
name: Balkwill, Frances
name: Mihaylova, Borislava
name: Grigg, Jonathan
name: Quint, Jennifer K
name: Fletcher, Monica
name: Mon-Williams, Mark
name: Wright, John
name: van Sluijs, Esther
name: Beevers, Sean
name: Randhawa, Gurch
name: Eldridge, Sandra
name: Sheikh, Aziz
name: Gauderman, William
name: Kelly, Frank
name: Mudway, Ian S
name: Griffiths, Christopher J
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Biotechnology
Environmental Sciences not elsewhere classified
Chemical Sciences not elsewhere classified
Science Policy

description: Supplementary table for Tables (PDF 38 kb)
Fus-MAE: A cross-attention-based data fusion approach for Masked Autoencoders in remote sensing
Creators: name: Chan-To-Hing, Hugo
name: Veeravalli, Bharadwaj
Publisher: name: arXiv
Year: 2024
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: Self-supervised frameworks for representation learning have recently stirred up interest among the remote sensing community, given their potential to mitigate the high labeling costs associated with curating large satellite image datasets. In the realm of multimodal data fusion, while the often used contrastive learning methods can help bridging the domain gap between different sensor types, they rely on data augmentations techniques that require expertise and careful design, especially for multispectral remote sensing data. A possible but rather scarcely studied way to circumvent these limitations is to use a masked image modelling based pretraining strategy. In this paper, we introduce Fus-MAE, a self-supervised learning framework based on masked autoencoders that uses cross-attention to perform early and feature-level data fusion between synthetic aperture radar and multispectral optical data - two modalities with a significant domain gap. Our empirical findings demonstrate that Fus-MAE can effectively compete with contrastive learning strategies tailored for SAR-optical data fusion and outperforms other masked-autoencoders frameworks trained on a larger corpus.
Modelling pathwise uncertainty of Stochastic Differential Equations samplers via Probabilistic Numerics
Creators: name: Fay, Yvann Le
name: Särkkä, Simo
name: Corenflos, Adrien
Publisher: name: arXiv
Year: 2024
Subjects: subject: Numerical Analysis (math.NA)
subject: Computation (stat.CO)
subject: Methodology (stat.ME)
subject: FOS: Mathematics
subject: FOS: Computer and information sciences
subject: 65C30, 60G15

description: Probabilistic ordinary differential equation (ODE) solvers have been introduced over the past decade as uncertainty-aware numerical integrators. They typically proceed by assuming a functional prior to the ODE solution, which is then queried on a grid to form a posterior distribution over the ODE solution. As the queries span the integration interval, the approximate posterior solution then converges to the true deterministic one. Gaussian ODE filters, in particular, have enjoyed a lot of attention due to their computational efficiency, the simplicity of their implementation, as well as their provable fast convergence rates. In this article, we extend the methodology to stochastic differential equations (SDEs) and propose a probabilistic simulator for SDEs. Our approach involves transforming the SDE into a sequence of random ODEs using piecewise differentiable approximations of the Brownian motion. We then apply probabilistic ODE solvers to the individual ODEs, resulting in a pathwise probabilistic solution to the SDE\@. We establish worst-case strong $1.5$ local and $1.0$ global convergence orders for a specific instance of our method. We further show how we can marginalise the Brownian approximations, by incorporating its coefficients as part of the prior ODE model, allowing for computing exact transition densities under our model. Finally, we numerically validate the theoretical findings, showcasing reasonable weak convergence properties in the marginalised version.
description: 36 pages, accepted to Bayesian Analysis, to be announced
Additional file 1 of Use of routine health information systems data in developing and monitoring district and facility health plans: a scoping review
Creators: name: Byrne, Elaine
name: Heywood, Arthur
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Science Policy
subject: Information Systems not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences

description: Supplementary Material 1
Leveling the Playing Field: Cultural Relativism and Inequality
Creators: name: Tamás Bogár, Ádám
Publisher: name: Salem Press
Year: 2018
Subjects: subject: American fiction
subject: American literature
subject: Twentieth century
subject: Literature and anthropology
subject: Science fiction
subject: Equality

description: In this chapter, Adam T. Bogar explores class inequality in the literary work of Kurt Vonnegut through the lens of a particular theory from the discipline of anthropology, a discipline in which Vonnegut was very interested. Beginning with an analysis of how American writer Vonnegut developed an interest in anthropology and political thought, Bogar analyzes Vonnegut's
1959 novel The Sirens of Titan and his 1961 short story "Harrison Bergeron" as well as a selection of his non-fiction. Noting that Vonnegut's fiction portrayed the hardships suffered by the poorest members of society empathetically, Bogar suggests that Vonnegut's interest in anthropology led him to a rejection of the idea that we should create egalitarian societies through cultural relativism, an idea influencing anthropologists during Vonnegut's college years. Cultural relativism suggested to Vonnegut an artificial and destructive leveling of difference.
Additional file 4 of Investigating the impact of London’s ultra low emission zone on children’s health: children’s health in London and Luton (CHILL) protocol for a prospective parallel cohort study
Creators: name: Tsocheva, Ivelina
name: Scales, James
name: Dove, Rosamund
name: Chavda, Jasmine
name: Kalsi, Harpal
name: Wood, Helen E
name: Colligan, Grainne
name: Cross, Louise
name: Newby, Chris
name: Hall, Amy
name: Keating, Mia
name: Sartori, Luke
name: Moon, Jessica
name: Thomson, Ann
name: Tomini, Florian
name: Murray, Aisling
name: Hamad, Wasim
name: Tijm, Sarah
name: Hirst, Alice
name: Vincent, Britzer Paul
name: Kotala, Pavani
name: Balkwill, Frances
name: Mihaylova, Borislava
name: Grigg, Jonathan
name: Quint, Jennifer K
name: Fletcher, Monica
name: Mon-Williams, Mark
name: Wright, John
name: van Sluijs, Esther
name: Beevers, Sean
name: Randhawa, Gurch
name: Eldridge, Sandra
name: Sheikh, Aziz
name: Gauderman, William
name: Kelly, Frank
name: Mudway, Ian S
name: Griffiths, Christopher J
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Biotechnology
Environmental Sciences not elsewhere classified
Chemical Sciences not elsewhere classified
Science Policy

description: Supplementary table for Tables (PDF 38 kb)
Additional file 1 of BBB-on-a-chip with integrated micro-TEER for permeability evaluation of multi-functionalized gold nanorods against Alzheimer’s disease
Creators: name: Palma-Florez, Sujey
name: López-Canosa, Adrián
name: Moralez-Zavala, Francisco
name: Castaño, Oscar
name: Kogan, Marcelo J.
name: Samitier, Josep
name: Lagunas, Anna
name: Mir, Mònica
Publisher: name: figshare
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Neuroscience
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Cancer
subject: Hematology

description: Additional file 1: Figure S1. Setup for TEER measurement in sterile conditions. Figure S2. Equivalent circuit and Nyquist plot of TEER from A) BBB-oC and B) control without EC and their fitting. Schema 2. Schematic representation of A) GNR-PEG-Ang2/D1 and B) Synthesis and functionalization process. Figure S3. Nanosystem characterization of GNR-CTAB, GNR-PEG and GNR-PEG-Ang2/D1. A) UV-vis-NIR absorbance spectrum B) Transversal and longitudinal hydrodynamic diameter (Dh), polydispersity index (Pdi) and zeta potential (pZ) C) TEM images obtained by transmission electron microscopy and D) histograms with their corresponding aspect ratio length/width distribution from 50 particles. Figure S4. Western blot of MCF7 and hCMEC/D3 cells lysate against LRP1 protein and actin. Figure S5. P values of GNR-PEG-Ang2/D1 exposed to endocytosis inhibition. Figure S6. TJs influence by D1 and Ang2 peptides by immunofluorescence and TEER. Fluorescence confocal images of TJs on Day 8 after incubation with D1 175,6nM or Ang2 69,2nM for 24 hours. Scale bar 50μm. Nyquist plot of TEER measurement (Ω.cm2) of BBB-oC before (Day 7) and next to peptide exposure for 24 hours.
Hook formula for Coxeter groups via the twisted group ring
Creators: name: Mihalcea, Leonardo C.
name: Naruse, Hiroshi
name: Su, Changjian
Publisher: name: arXiv
Year: 2024
Subjects: subject: Representation Theory (math.RT)
subject: Combinatorics (math.CO)
subject: Group Theory (math.GR)
subject: Rings and Algebras (math.RA)
subject: FOS: Mathematics
subject: 20F55, 05E16, 16S35

description: We use Kostant and Kumar's twisted group ring and its dual to formulate and prove a generalization of Nakada's colored hook formula for any Coxeter groups. For dominant minuscule elements of the Weyl group of a Kac--Moody algebra, this provides another short proof of Nakada's colored hook formula.
description: 12 pages
RNamotiFold paper data
Creators: name: Sebeke, Marius
name: Voß, Björn
Publisher: name: figshare
Year: 2025
Subjects: classificationCode: 310201
subject: Bioinformatic methods development
classificationCode: 310206
subject: Sequence analysis

description: rfam386: Predictions for Rfam seed alignment motif containing sequences (with length =< 400) using RNA 3D Motif Atlas version 3.86.rfam.seed: Contains all sequences present in the benchmark (Sequences from Rfam release 14.9 that were annotated with one of the motifs available to the algorithm at the time and have a sequence length below 400).
RNA3DAtlas386: Contains all motif sequences with their abbreviations that were used for the benchmark.RNAmotiFold.tar.gz: Zipped archive of a RNAmotiFold version capable of reproducing the rfam386 results. Unpack it by running:tar -cfvz RNAmotiFold.tar.gzInstall the algorithm as per the contained README.mdCopy Hairpin, Internal and Bulge Loop sequences from the RNA3DAtlas386.txt file into separate csv files and run:python3 RNAmotiFold.py -a RNAmotiFold -L -E -G -k 50 -u 0 -t 37.0 -X [path to hairpin csv] -Y [path to internals csv] -Z [path to bulges csv] -o [output file] -i [path to Rfam.seed file]
Additional file 2 of GenArk: towards a million UCSC genome browsers
Creators: name: Clawson, Hiram
name: Lee, Brian T.
name: Raney, Brian J.
name: Barber, Galt P.
name: Casper, Jonathan
name: Diekhans, Mark
name: Fischer, Clay
name: Gonzalez, Jairo Navarro
name: Hinrichs, Angie S.
name: Lee, Christopher M.
name: Nassar, Luis R.
name: Perez, Gerardo
name: Wick, Brittney
name: Schmelter, Daniel
name: Speir, Matthew L.
name: Armstrong, Joel
name: Zweig, Ann S.
name: Kuhn, Robert M.
name: Kirilenko, Bogdan M.
name: Hiller, Michael
name: Haussler, David
name: Kent, W. James
name: Haeussler, Maximilian
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2. Review history.
Gendai Haiku and Meaning in Ban'ya Natsuishi's Hybrid Paradise
Creators: name: Tamás Bogár, Ádám
Publisher: name: Cyberwit
Year: 2018
Subjects: subject: Japanese literature
subject: Japanese--Social life and customs
subject: History, Modern
subject: Poetry--Translating

description: This brief essay is about an understanding of the essence of modern (or rather postmodern) haiku, and it is meant to offer an explanation as to the reason why such haiku, in particular those by Japanese haiku poet Ban'ya Natsuishi, are frequently deemed incomprehensible. The term 'modern' (or
'postmodern') haiku here does not refer to haiku written in recent times, it is not a chronological descriptor; instead, it refers to a specific subgenre of
haiku poetry usually called gendai haiku. Bogar considers Ban'ya Natsuishi's volume of haiku Hybrid Paradise (2010), focusing specifically (and exclusively) on some meaning-related qualities of haiku.
TONE: A 3-Tiered ONtology for Emotion analysis
Creators: name: Gupta, Srishti
name: Garg, Piyush Kumar
name: Dandapat, Sourav Kumar
Publisher: name: arXiv
Year: 2024
Subjects: subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: Emotions have played an important part in many sectors, including psychology, medicine, mental health, computer science, and so on, and categorizing them has proven extremely useful in separating one emotion from another. Emotions can be classified using the following two methods: (1) The supervised method's efficiency is strongly dependent on the size and domain of the data collected. A categorization established using relevant data from one domain may not work well in another. (2) An unsupervised method that uses either domain expertise or a knowledge base of emotion types already exists. Though this second approach provides a suitable and generic categorization of emotions and is cost-effective, the literature doesn't possess a publicly available knowledge base that can be directly applied to any emotion categorization-related task. This pushes us to create a knowledge base that can be used for emotion classification across domains, and ontology is often used for this purpose. In this study, we provide TONE, an emotion-based ontology that effectively creates an emotional hierarchy based on Dr. Gerrod Parrot's group of emotions. In addition to ontology development, we introduce a semi-automated vocabulary construction process to generate a detailed collection of terms for emotions at each tier of the hierarchy. We also demonstrate automated methods for establishing three sorts of dependencies in order to develop linkages between different emotions. Our human and automatic evaluation results show the ontology's quality. Furthermore, we describe three distinct use cases that demonstrate the applicability of our ontology.
Bradbury, Technology, and the Future of Reading
Creators: name: Szigethy, Rebeka Sára
name: Tamás Bogár, Ádám
Publisher: name: Salem Press
Year: 2014
Subjects: subject: Science fiction
subject: Reading
subject: Reading--Philosophy
subject: Twentieth century
subject: American literature

description: Ádám T. Bogár and Rebeka Sára Szigethy look from the world of Fahrenheit 451, where reading is forbidden, to our wide-open world of the present, and into the future as well. Networked reading among groups of people and near-infinite searchability linked out from electronic texts themselves offer interesting new possibilities for personal and social enrichment. Still, as Bogár and Szigethy note, in a world where every file looks like every other until opened, a stubborn few of us nevertheless will prefer physical books that "smell like nutmeg or some spice from a foreign land..."
Principles of Marble-Work in the State Mosques: Extrapolations from Past and Present
Creators: name: A. Kamakh, Faten
Publisher: name: Manara - Qatar Research Repository
Year: 2025
Subjects: classificationCode: 50
subject: Philosophy and religious studies

description: The aim of this thesis is to explore the principles followed by the architects in Muslim cities to decorate and ornament state mosques using marble, the prestigious material. In addition, the study goal is to emphasize the methods of achieving what our ancestors between Umayyads and Ottomans reached. The principles were elaborated via an analysis and comparison between two mosques namely: the Mamluk Sultan Hassan Mosque in Cairo and the State Mosque in Doha. These ideologies can be a guideline to the designers who would like to achieve a quality result using marble as a classical material.Literature Review is used to elaborate on some themes that control and define marble ornamentation. These include the design, style, and examples of the important state mosques, which used marble in construction. As well as the understanding of the selected stone value, uses, characteristics, names, colors, sources, techniques, and patterns in several examples from the Islamic world. Through discussion of the previous listed points, the guiding parameters that were used in the analysis and comparison were extracted. Site visits were the tool used to describe the marble-work in the selected case studies led by these parameters. A comparison between Sultan Hassan Mosque, which is the past case study and Imam Mohamed bin Abd Al-Wahab Mosque in Qatar, which is the present example, was carried out to highlight these principles. They are outlined through a comparison, which led to the conclusion.The findings define the principles of the marble-work used at the time of the Islamic era between Umayyads and Ottomans through studying various small examples to studying the larger example of Sultan Hassan. Examining these principles in the present example of Ibn Al-Wahab Mosque demonstrates that the designer follows some of the philosophy of marble-work used in the past example. Comparison between the two state mosques led to the conclusion that more guidelines about marble-use in our time are required to sustain the material and to better utilize it in construction.
Additional file 1 of Advanced glycation end products impair bone marrow mesenchymal stem cells osteogenesis in periodontitis with diabetes via FTO-mediated N6-methyladenosine modification of sclerostin
Creators: name: Zhou, Jie
name: Zhu, Yanlin
name: Ai, Dongqing
name: Zhou, Mengjiao
name: Li, Han
name: Li, Guangyue
name: Zheng, Leilei
name: Song, Jinlin
Publisher: name: figshare
Year: 2023
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 1: Primer sequences to measure the mRNA levels by qPCR.
LionHeart: A Layer-based Mapping Framework for Heterogeneous Systems with Analog In-Memory Computing Tiles
Creators: name: Lammie, Corey
name: Wang, Yuxuan
name: Ponzina, Flavio
name: Klein, Joshua
name: Benmeziane, Hadjer
name: Zapater, Marina
name: Boybat, Irem
name: Sebastian, Abu
name: Ansaloni, Giovanni
name: Atienza, David
Publisher: name: arXiv
Year: 2024
Subjects: subject: Emerging Technologies (cs.ET)
subject: FOS: Computer and information sciences

description: When arranged in a crossbar configuration, resistive memory devices can be used to execute Matrix-Vector Multiplications (MVMs), the most dominant operation of many Machine Learning (ML) algorithms, in constant time complexity. Nonetheless, when performing computations in the analog domain, novel challenges are introduced in terms of arithmetic precision and stochasticity, due to non-ideal circuit and device behaviour. Moreover, these non-idealities have a temporal dimension, resulting in a degrading application accuracy over time. Facing these challenges, we propose a novel framework, named LionHeart, to obtain hybrid analog-digital mappings to execute Deep Learning (DL) inference workloads using heterogeneous accelerators. The accuracy-constrained mappings derived by LionHeart showcase, across different Convolutional Neural Networks (CNNs) and one transformer-based network, high accuracy and potential for speedup. The results of the full system simulations highlight run-time reductions and energy efficiency gains that exceed 6X, with a user-defined accuracy threshold for a fully digital floating point implementation. LionHeart is open-sourced here: https://github.com/IBM/lionheart.
description: Accepted by IEEE Transactions on Emerging Topics in Computing
Additional file 1 of GenArk: towards a million UCSC genome browsers
Creators: name: Clawson, Hiram
name: Lee, Brian T.
name: Raney, Brian J.
name: Barber, Galt P.
name: Casper, Jonathan
name: Diekhans, Mark
name: Fischer, Clay
name: Gonzalez, Jairo Navarro
name: Hinrichs, Angie S.
name: Lee, Christopher M.
name: Nassar, Luis R.
name: Perez, Gerardo
name: Wick, Brittney
name: Schmelter, Daniel
name: Speir, Matthew L.
name: Armstrong, Joel
name: Zweig, Ann S.
name: Kuhn, Robert M.
name: Kirilenko, Bogdan M.
name: Hiller, Michael
name: Haussler, David
name: Kent, W. James
name: Haeussler, Maximilian
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Supplemental Figures 1-4.
On the Interplay Between Network Metrics and Performance of Mobile Edge Offloading
Creators: name: Moshiri, Parisa Fard
name: Simsek, Murat
name: Kantarci, Burak
Publisher: name: arXiv
Year: 2024
Subjects: subject: Networking and Internet Architecture (cs.NI)
subject: Signal Processing (eess.SP)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: Multi-Access Edge Computing (MEC) emerged as a viable computing allocation method that facilitates offloading tasks to edge servers for efficient processing. The integration of MEC with 5G, referred to as 5G-MEC, provides real-time processing and data-driven decision-making in close proximity to the user. The 5G-MEC has gained significant recognition in task offloading as an essential tool for applications that require low delay. Nevertheless, few studies consider the dropped task ratio metric. Disregarding this metric might possibly undermine system efficiency. In this paper, the dropped task ratio and delay has been minimized in a realistic 5G-MEC task offloading scenario implemented in NS3. We utilize Mixed Integer Linear Programming (MILP) and Genetic Algorithm (GA) to optimize delay and dropped task ratio. We examined the effect of the number of tasks and users on the dropped task ratio and delay. Compared to two traditional offloading schemes, First Come First Serve (FCFS) and Shortest Task First (STF), our proposed method effectively works in 5G-MEC task offloading scenario. For MILP, the dropped task ratio and delay has been minimized by 20% and 2ms compared to GA.
description: 6 pages, 3 figures, IEEE International Conference on Communications (ICC) 2024
Quantum Ruzsa Divergence to Quantify Magic
Creators: name: Bu, Kaifeng
name: Gu, Weichen
name: Jaffe, Arthur
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Physics (quant-ph)
subject: Information Theory (cs.IT)
subject: Mathematical Physics (math-ph)
subject: Probability (math.PR)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences
subject: FOS: Mathematics

description: In this work, we investigate the behavior of quantum entropy under quantum convolution and its application in quantifying magic. We first establish an entropic, quantum central limit theorem (q-CLT), where the rate of convergence is bounded by the magic gap. We also introduce a new quantum divergence based on quantum convolution, called the quantum Ruzsa divergence, to study the stabilizer structure of quantum states. We conjecture a ``convolutional strong subadditivity'' inequality, which leads to the triangle inequality for the quantum Ruzsa divergence. In addition, we propose two new magic measures, the quantum Ruzsa divergence of magic and quantum-doubling constant, to quantify the amount of magic in quantum states. Finally, by using the quantum convolution, we extend the classical, inverse sumset theory to the quantum case. These results shed new insight into the study of the stabilizer and magic states in quantum information theory.
description: V2.29 pages V1.23 pages
NEW TRIASSIC ASTEROIDEA (ECHINODERMATA) SPECIMENS AND THEIR EVOLUTIONARY SIGNIFICANCE
Creators: name: BLAKE, DANIEL B.
name: TINTORI, ANDREA
name: KOLAR-JURKOVŠEK, TEA
Publisher: name: Rivista Italiana di Paleontologia e Stratigrafia (Research In Paleontology and Stratigraphy)
Year: 2017
Subjects: Asteroidea; Trichasteropsiidae; Poraniidae; phylogeny; Triassic; paleoenvironment

description: The Paleozoic-Mesozoic transition saw the disappearance of asteroid stem groups and the ascent of the crown group, but late Paleozoic and Triassic asteroids are rare and transition events are poorly documented. Three new Middle and Late Triassic specimens augment existing data; included are a specimen of Trichasteropsis weissmanni from Germany, a specimen of Trichasteropsis? sp. indet. from Italy, and a possible member of the extant Poraniidae from Slovenia. Presence of a small ossicle at the interbrachial midline and adjacent to the marginal series of the new T. weissmanni specimen is consistent with similar expressions not only of other trichasteropsids but also occurrence of two interbrachial ossicles in Paleozoic, stem-group asterozoans; presence is in turn consistent with a hypothesis of derivation of the axillary/odontophore coupling from two ossicles rather than direct derivation of the crown-group odontophore from a single stem-group axillary. Morphology of Trichasteropsis? sp. indet., including, for example, the evenly-tapering arms are reminiscent of those of diverse crown-group asteroids whereas the enlarged distal arms of T. weissmanni are unique, the morphology of T? sp. indet. thereby potentially indicative of a plesiomorphic, stemward positioning within the Trichasteropsiidae. The range of the Poraniidae is tentatively extended to the Carnian. Similarities shared by the Poraniidae and the Trichasteropsiidae suggest stemward positioning within crown-group diversification; however, known Triassic fossils do not appear closely related to extant taxa identified in recent molecular studies as basal within the crown-group. A temperate climate is suggested as preferred by the Triassic asteroids rather than a tropical, warmer one.
description: Rivista Italiana di Paleontologia e Stratigrafia (Research In Paleontology and Stratigraphy), V. 123, N. 2 (2017)
Additional file 1 of Functional network connectivity patterns predicting the efficacy of repetitive transcranial magnetic stimulation in the spectrum of Alzheimer’s disease
Creators: name: Chen, Haifeng
name: Li, Mengyun
name: Qin, Zhiming
name: Yang, Zhiyuan
name: Lv, Tingyu
name: Yao, Weina
name: Hu, Zheqi
name: Qin, Ruomeng
name: Zhao, Hui
name: Bai, Feng
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Cell Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biological Sciences not elsewhere classified
subject: Mental Health

description: Additional file 1:  Table S1. Demographic and neuropsychological data in the rTMS treatment group. Fig. S1. Cognitive performance in the rTMS group before and after rTMS treatment. The rTMS group (n = 28) showed cognitive improvement in the memory function (t = -4.74, p < 0.001) and information processing speed (t = -2.17, p = 0.039) after rTMS treatment. Fig. S2. Cognitive performance in the sham rTMS group before and after rTMS treatment. No significant difference in cognitive performance before and after rTMS treatment was found in the sham group.
Credit Risk Meets Large Language Models: Building a Risk Indicator from Loan Descriptions in P2P Lending
Creators: name: Sanz-Guerrero, Mario
name: Arroyo, Javier
Publisher: name: arXiv
Year: 2024
Subjects: subject: Risk Management (q-fin.RM)
subject: Artificial Intelligence (cs.AI)
subject: Computation and Language (cs.CL)
subject: Machine Learning (cs.LG)
subject: FOS: Economics and business
subject: FOS: Computer and information sciences

description: Peer-to-peer (P2P) lending connects borrowers and lenders through online platforms but suffers from significant information asymmetry, as lenders often lack sufficient data to assess borrowers' creditworthiness. This paper addresses this challenge by leveraging BERT, a Large Language Model (LLM) known for its ability to capture contextual nuances in text, to generate a risk score based on borrowers' loan descriptions using a dataset from the Lending Club platform. We fine-tune BERT to distinguish between defaulted and non-defaulted loans using the loan descriptions provided by the borrowers. The resulting BERT-generated risk score is then integrated as an additional feature into an XGBoost classifier used at the loan granting stage, where decision-makers have limited information available to guide their decisions. This integration enhances predictive performance, with improvements in balanced accuracy and AUC, highlighting the value of textual features in complementing traditional inputs. Moreover, we find that the incorporation of the BERT score alters how classification models utilize traditional input variables, with these changes varying by loan purpose. These findings suggest that BERT discerns meaningful patterns in loan descriptions, encompassing borrower-specific features, specific purposes, and linguistic characteristics. However, the inherent opacity of LLMs and their potential biases underscore the need for transparent frameworks to ensure regulatory compliance and foster trust. Overall, this study demonstrates how LLM-derived insights interact with traditional features in credit risk modeling, opening new avenues to enhance the explainability and fairness of these models.
Experimental study of three-dimensional turbulence under a free surface
Creators: name: Jamin, Timothée
name: Berhanu, Michael
name: Falcon, Eric
Publisher: name: arXiv
Year: 2024
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: In many environmental flows, an air-water free surface interacts with a turbulent flow in the water phase. To mimic this situation, we propose an original experimental setup, based on the Randomly Actuated Synthetic Jet Array (RASJA) forcing used to study turbulence with almost no mean flow. By using a central pump connected to jets, we generate a turbulent flow of tunable intensity, with good isotropy and horizontal homogeneity, up to a maximal turbulent Reynolds number of $8800$. The aim here is to characterize how turbulence is modified by the presence of a free surface. We show that the free surface affects turbulence for fluid depths smaller than the integral length. We report that the turbulent fluctuations become strongly anisotropic when approaching the free surface. The vertical velocity fluctuations decrease close to the surface whereas the horizontal ones increase, as reported in previous theoretical predictions and numerical observations. We also observe a strong enhancement of the amplitude of the temporal and spatial power spectra of the horizontal velocity at large scales, showing the strengthening of these velocity fluctuations near the free surface. Besides, these behaviors are studied for various levels of turbulence.
Additional file 5 of Advanced glycation end products impair bone marrow mesenchymal stem cells osteogenesis in periodontitis with diabetes via FTO-mediated N6-methyladenosine modification of sclerostin
Creators: name: Zhou, Jie
name: Zhu, Yanlin
name: Ai, Dongqing
name: Zhou, Mengjiao
name: Li, Han
name: Li, Guangyue
name: Zheng, Leilei
name: Song, Jinlin
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 5: The uncropped blots of WB.
Towards High-Accuracy and Resource-Efficient Edge-Assisted Augmented Reality
Creators: name: Xu, Qiang
Publisher: name: Purdue University Graduate School
Year: 2024
Subjects: classificationCode: 460608
subject: Mobile computing
classificationCode: 460609
subject: Networking and communications
classificationCode: 461104
subject: Neural networks

description: Immersive applications such as augmented reality (AR) and mixed reality (MR) often need to perform latency-critical analytics tasks on every frame captured on camera. These tasks, often powered by deep neural networks (DNNs) for their superior accuracy, necessitate offloading to edge servers with GPUs due to their computational intensity. Achieving high accuracy and efficient AR task offloading faces two fundamental challenges untapped by prior work: (1) In practice, multiple DNN-supported tasks need to offload concurrently to achieve the app functionality -- how to schedule such offloaded tasks on the client which compete for shared edge server resources to maximize the app QoE? (2) Concurrent AR clients from a large user base offload to a cluster of GPU servers -- how to schedule the offloaded tasks on the servers to maximize the number of clients served and lower the operating cost?To tackle the first challenge, we design a framework, AccuMO, that balances the offloading frequencies of different tasks by dynamically scheduling the offloading of multiple tasks from an AR client to an edge server, thereby optimizing the overall accuracy across tasks and hence app QoE. Our design employs two novel ideas: (1) task-specific lightweight models that predict offloading accuracy drop as a function of offloading frequency and frame content, and (2) a general two-level control feedback loop that concurrently balances offloading among tasks and adapts between offloading and using local algorithms for each task.We tackle the challenge of supporting concurrent AR clients in two steps. We first focus on maximizing the capacity of individual edge servers, where we present ARISE, which untangles the intricate interplay between per-client offloading schedule and batched inference on the server by proactively coordinating offloading requests from different AR clients. In the second step, we focus on a cluster setup of heterogeneous GPU servers which exposes the synergy between diversity in both DNN layers and GPU architectures, manifesting as comparable inference latency for many layers in DNN models when running on low-class and high-class GPUs. We exploit such overlooked capability of low-class GPUs using pipeline parallelism and present a novel inference serving system, IPIPE, that employs pool-based pipeline parallelism with a mixed-integer linear programming (MILP)-based control plane and a data plane that performs resource reservation-based adaptive batching.