cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Hybrid immunity to SARS-CoV-2 arises from serological recall of IgG antibodies distinctly imprinted by infection or vaccination
Creators: name: Seeger, Allison
name: Townsend, Douglas R
name: Lavinder, Jason J
name: Kain, Jessica
name: Voss, William N
name: Huang, Yimin
name: Ippolito, Gregory C
name: Mallory, Michael A
name: Knudson, Sean A
name: McLellan, Jason S
name: Powers, John M
name: Scobey, Trevor
name: Leist, Sarah R
name: Dadonaite, Bernadeta
name: Paresi, Chelsea
name: Satterwhite, Ed
name: Bloom, Jesse D
name: Castillo, Izabella N
name: Georgiou, George
name: Premkumar, Lakshmanane
name: Baric, Ralph S
name: Byrne, Patrick O
name: Mattocks, Melissa
name: Munt, Jennifer E
name: Marchioni, Jeffrey M
Publisher: name: Elsevier
Year: 2024

description: We describe the molecular-level composition of polyclonal immunoglobulin G (IgG) anti-spike antibodies from ancestral severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection, vaccination, or their combination ("hybrid immunity") at monoclonal resolution. Infection primarily triggers S2/N-terminal domain (NTD)-reactive antibodies, whereas vaccination mainly induces anti-receptor-binding domain (RBD) antibodies. This imprint persists after secondary exposures wherein >60% of ensuing hybrid immunity derives from the original IgG pool. Monoclonal constituents of the original IgG pool can increase breadth, affinity, and prevalence upon secondary exposures, as exemplified by the plasma antibody SC27. Following a breakthrough infection, vaccine-induced SC27 gained neutralization breadth and potency against SARS-CoV-2 variants and zoonotic viruses (half-maximal inhibitory concentration [IC50] ∼0.1-1.75 nM) and increased its binding affinity to the protective RBD class 1/4 epitope (dissociation constant [KD] < 5 pM). According to polyclonal escape analysis, SC27-like binding patterns are common in SARS-CoV-2 hybrid immunity. Our findings provide a detailed molecular definition of immunological imprinting and show that vaccination can produce class 1/4 (SC27-like) IgG antibodies circulating in the blood.
Stellar populations in the Galactic bulge
Creators: name: Vanhollebeke, E.
name: Groenewegen, M. A. T.
name: Girardi, L.
Publisher: name: arXiv
Year: 2009
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: AIMS:The aim of this paper is to study the characteristics of the stellar populations and the metallicity distribution in the Galactic bulge. We study the entire stellar population, but also retrieve information using only the red clump stars. METHODS: To study the characteristics of the stellar populations and the metallicity distribution in the Galactic bulge, we compared the output of the galaxy model TRILEGAL, which implements the Binney et al. (1997) bulge model, with observations from 2MASS and OGLE-II. A minimisation procedure has been set up to retrieve the best fitting model with different stellar populations and metallicity distributions. RESULTS: Using the TRILEGAL code we find that the best model resembling the characteristics of the Galactic bulge is a model with the distance to the Galactic centre $R_0 = 8.7\pm^{0.57}_{0.43}$ kpc, the major axis ratios of the bar $1:η:ζ= 1 : 0.68\pm_{0.19}^{0.05} : 0.31\pm_{0.04}^{0.06}$, and the angle between the Sun-centre line and the bar $ϕ= 15°\pm_{12.7}^{13.3}$. Using these parameters the best model is found for a burst of 8 Gyr, although it is almost indistinguishable from models with ages of 9 and 10 Gyr. The metallicity distribution found is consistent with metallicity distributions in the literature based on spectroscopic results.
description: A&A accepted
JCAMP-DC format documentation formerly on BADC website
Creators: name: Pepler, Sam
Publisher: name: Zenodo
Year: 2009
Subjects: subject: data and information
subject: format
subject: https://id.loc.gov/authorities/subjects/sh85022986.html

description: This webpage describes the JCAMP-DX (The joint Committee on Atomic and Molecular Physical data – Data Exchange) format following an internal review by CEDA for the suitability of this format for long-term archiving within CEDA's archives.
description: Previously curated at: http://cedadocs.ceda.ac.uk/999/ The publish date on this item was its original published date. This item was previously associated with content (as an official url) at: http://www.ceda.ac.uk/help/users-guide/file-formats/. This work was funded by: Natural Environment Research Council (NERC). Main files in this record: JCAMP-DX_format.html Item originally deposited with Centre for Environmental Data Analysis (CEDA) document repository by Dr Graham Parton. Transferred to CEDA document repository community on Zenodo on 2022-11-24
SDSS-IV MaNGA: Stellar rotational support in disk galaxies vs. central surface density and stellar population age
Creators: name: Wang, Xiaohan
name: Luo, Yifei
name: Faber, S. M.
name: Koo, David C.
name: Mao, Shude
name: Westfall, Kyle B.
name: Lu, Shengdong
name: Wang, Weichen
name: Bundy, Kevin
name: Boardman, N.
name: Avila-Reese, Vladimir
name: Fernández-Trincado, José G.
name: Lane, Richard R.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We investigate how the stellar rotational support changes as a function of spatially resolved stellar population age ($\rm D_n4000$) and relative central stellar surface density ($ΔΣ_1$) for MaNGA isolated/central disk galaxies. We find that the galaxy rotational support $λ_{R_\mathrm{e}}$ varies smoothly as a function of $ΔΣ_1$ and $\rm D_n4000$. $\rm D_n4000$ vs. $ΔΣ_1$ follows a "J-shape", with $λ_{R_\mathrm{e}}$ contributing to the scatters. In this "J-shaped" pattern rotational support increases with central $\rm D_n4000$ when $ΔΣ_1$ is low but decreases with $ΔΣ_1$ when $ΔΣ_1$ is high. Restricting attention to low-$ΔΣ_1$ (i.e, large-radius) galaxies, we suggest that the trend of increasing rotational support with $\rm D_n4000$ for these objects is produced by a mix of two different processes, a primary trend characterized by growth in $λ_{R_\mathrm{e}}$ along with mass through gas accretion, on top of which disturbance episodes are overlaid, which reduce rotational support and trigger increased star formation. An additional finding is that star forming galaxies with low $ΔΣ_1$ have relatively larger radii than galaxies with higher $ΔΣ_1$ at fixed stellar mass. Assuming that these relative radii rankings are preserved while galaxies are star forming then implies clear evolutionary paths in central $\rm D_n4000$ vs. $ΔΣ_1$. The paper closes with comments on the implications that these paths have for the evolution of pseudo-bulges vs. classical-bulges. The utility of using $\rm D_n4000$-$ΔΣ_1$ to study $λ_{R_\mathrm{e}}$ reinforces the notion that galaxy kinematics correlate both with structure and with stellar-population state, and indicates the importance of a multi-dimensional description for understanding bulge and galaxy evolution.
description: 24 pages, 22 figures (including Appendix), accepted for publication in MNRAS
The Microscopic Response Method: theory of transport for systems with both topological and thermal disorder
Creators: name: Zhang, MingLiang
name: Drabold, D. A.
Publisher: name: arXiv
Year: 2010
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: In this paper, we review and substantially develop the recently proposed "Microscopic Response Method", which has been devised to compute transport coefficients and especially associated temperature dependence in complex materials. The conductivity and Hall mobility of amorphous semiconductors and semiconducting polymers are systematically derived, and shown to be more practical than the Kubo formalism. The effect of a quantized lattice (phonons) on transport coefficients is fully included and then integrated out, providing the primary temperature dependence for the transport coefficients. For higher-order processes, using a diagrammatic expansion, one can consistently include all important contributions to a given order and directly write out the expressions of transport coefficients for various processes.
description: paper: 12.3 pages, 13 figures, submitted to physica status solidi (b), supporting information: 14.5 pages
Resonant tunneling controlled by laser and constant electric fields
Creators: name: Kaminski, J. Z.
name: Saczuk, E.
Publisher: name: arXiv
Year: 2011
Subjects: subject: Quantum Physics (quant-ph)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Other Condensed Matter (cond-mat.other)
subject: FOS: Physical sciences

description: We develop the concept of scattering matrix and we use it to perform stable numerical calculations of resonant tunneling of electrons through a multiple potential barrier in a semiconductor heterostructure. Electrons move in two external nonperturbative electric fields: constant and oscillating in time. We apply our algorithm for different strengths and spatial configurations of the fields.
description: 10 pages, 11 figures
A fundamental requirement for crystal-field parametrization
Creators: name: Mulak, Jacek
name: Mulak, Maciej
Publisher: name: arXiv
Year: 2011
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The physically correct parametrization of the energy levels of transition ions in crystals in terms of crystal-field (CF) Hamiltonians ${\cal H}_{\rm CF}=\sum_{k}\sum_{q}B_{kq}C_{q}^{(k)}$ has to be based on the CF parameters $B_{kq}$ that lead to the correct CF splitting second moments, both the global one $σ$ and the partial ones $σ_{k}$. Only such parametrizations correspond to the appropriate multipolar structure of the surrounding CF. Each parametrization being characterized by its own multipolar crystal-field strengths $S_{k}=(\frac{1}{2k+1}\sum\limits_{q}|B_{kq}|^{2})^{1/2}$, for $k=2,4$ and 6, yields a definite second moment $σ$, which can be derived from the additivity relationship $σ^{2}=\sum_{k}σ_{k}^{2}$ and the known asphericities $< Ψ||C^{(k)}||Ψ>$ of the central-ion eigenfunctions $Ψ$. The condition $σ=σ_{\rm exp}$ must be satisfied to ensure the parametrization's correctness. However, our survey of literature indicates that there exists many other well-fitted crystal-field parameter sets that do not obey this condition. Therefore, such sets are erratic and non-physical, and should be re-examined or rejected. Having $σ$ for several $(\geq3)$ eigenstates $|Ψ>$ along with the relevant $< Ψ||C^{(k)}||Ψ>$ asphericities, one can estimate $σ_{k}$ and $S_{k}$, which are well-founded experimentally. The above findings set up the parametrization process properly. Lack of consistency between the second moments representing various parametrizations and the pertinent second moments observed in experiments is presumably the main reason for deluge of formally accurate but accidental and inequivalent parametrizations.
description: 10 pages, 2 tables; submitted to pss(b)
ASCOE Implementation Plan March 1996
Creators: name: Sturges, W T
name: Reeves, CE
name: Penkett, S A
name: Liss, PS
name: Choularton, TW
name: Broadgate, WJ
name: Bower, KN
name: Law, KS
name: Gray, LJ
name: McFadyen, GG
name: Penkett, M
Publisher: name: Zenodo
Year: 1996
Subjects: subject: data and information
subject: https://id.loc.gov/authorities/subjects/sh85022986.html
subject: https://id.loc.gov/authorities/subjects/sh2018002590.html
subject: https://id.loc.gov/authorities/subjects/sh85040468.html

description: Executive summary: Atmospheric Chemistry Studies in the Oceanic Environment (ACSOE) is a 5-year Community Research Program to investigate the physico-chemical processes occurring in the atmosphere (the boundary layer and the free troposphere) over the oceans. The ACSOE Implementation Plan provides details of the means by which the experiments which constitute ACSOE will be carried out.
description: Previously curated at: http://cedadocs.ceda.ac.uk/1001/ The publish date on this item was its original published date. Main files in this record: ACSOE_implementation_plan_March_1996.pdf Item originally deposited with Centre for Environmental Data Analysis (CEDA) document repository by Miss Poppy Townsend. Transferred to CEDA document repository community on Zenodo on 2022-11-24
Flexoelectric effect in biaxial nematics
Creators: name: Kapanowski, A.
Publisher: name: arXiv
Year: 2011
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: The flexoelectric (FE) effect provides a linear coupling between electric polarization and orientational deformation in liquid crystals. It influences many electrooptical phenomena and it is used in some bistable nematic devices. A statistical theory of dipole FE polarization in biaxial nematic liquid crystals is used to calculate temperature dependence of order parameters, elastic constants, and FE coefficients. The splitting of the two Meyer FE coefficients and the appearance of new FE coefficients is obtained at the uniaxial-biaxial nematic transition. The ordering of the splited FE coefficients corresponds to the ordering of the splited elastic constants.
description: 17 pages, 6 figures, 2 tables
Evacuation in the Social Force Model is not stationary
Creators: name: Gawroński, P.
name: Kułakowski, K.
name: Kämpf, M.
name: Kantelhardt, J. W.
Publisher: name: arXiv
Year: 2011
Subjects: subject: Physics and Society (physics.soc-ph)
subject: FOS: Physical sciences

description: An evacuation process is simulated within the Social Force Model. Thousand pedestrians are leaving a room by one exit. We investigate the stationarity of the distribution of time lags between instants when two successive pedestrians cross the exit. The exponential tail of the distribution is shown to gradually vanish. Taking fluctuations apart, the time lags decrease in time till there are only about 50 pedestrians in the room, then they start to increase. This suggests that at the last stage the flow is laminar. In the first stage, clogging events slow the evacuation down. As they are more likely for larger crowds, the flow is not stationary. The data are investigated with detrended fluctuation analysis.
description: 7 pages, 3 figures; PACS numbers: 89.75.Fb, 05.40.-a, 05.45.Tp, 89.40.Bb
The State of FaaS: An analysis of public Functions-as-a-Service providers
Creators: name: Ekwe-Ekwe, Nnamdi
name: Amos, Lucas
Publisher: name: arXiv
Year: 2024
Subjects: subject: Distributed, Parallel, and Cluster Computing (cs.DC)
subject: FOS: Computer and information sciences

description: Serverless computing is a growing and maturing field that is the focus of much research, industry interest and adoption. Previous works exploring Functions-as-a-Service providers have focused primarily on the most well known providers AWS Lambda, Google Cloud Functions and Microsoft Azure Functions without exploring other providers in similar detail. In this work, we conduct the first detailed review of ten currently publicly available FaaS platforms exploring everything from their history, to their features and pricing to where they sit within the overall public FaaS landscape, before making a number of observations as to the state of the FaaS.
description: This paper has been accepted to the 17th IEEE International Conference on Cloud Computing (CLOUD). This paper contains 10 pages and 2 figures
Lactarius deliciosus
Creators: name: Jarvis, Charlie
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Fungi
Basidiomycota
Agaricomycetes
Russulales
Russulaceae
Lactarius
Lactarius deliciosus

description: Agaricus deliciosus Linnaeus, Species Plantarum 2: 1172. 1753. "Habitat in Montibus, sterilibus, sylvosis." RCN: 8430. Type not designated. Original material: none traced. Current name:  Lactarius deliciosus (L.: Fr.) Gray (Russulaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part A), pp. 252-342 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 267, DOI: 10.5281/zenodo.291971
Agaricus dentatus Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Fungi
Basidiomycota
Agaricomycetes
Agaricales
Agaricaceae
Agaricus
Agaricus dentatus

description: Agaricus dentatus Linnaeus, Species Plantarum 2: 1172. 1753. "Habitat in Sylvis." RCN: 8425. Type not designated. Original material: none traced. Current name:  Agaricus dentatus L. (Agaricaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part A), pp. 252-342 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 267, DOI: 10.5281/zenodo.291971
Tricholoma equestre P. Kummer 1871
Creators: name: Jarvis, Charlie
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Lamiales
Scrophulariaceae
Tricholoma
Tricholoma equestre

description: Agaricus equestris Linnaeus, Species Plantarum 2: 1173. 1753. "Habitat in Pascuis, Sylvis." RCN: 8438. Type not designated. Original material: none traced. Current name:  Tricholoma equestre (L.: Fr.) P. Kumm. (Tricholomataceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part A), pp. 252-342 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 267, DOI: 10.5281/zenodo.291971
MERTK Is a Potential Therapeutic Target in Ewing Sarcoma
Creators: name: Wang, Xiaodong
name: Santos, M. Olivia
name: Smart, Sherri K.
name: Graham, Douglas K.
name: Frye, Stephen V.
name: Earp, H. Shelton
name: DeRyckere, Deborah
name: Yeung, Tsz Y.
name: McSwain, Leon F.
Publisher: name: MDPI
Year: 2024

description: Outcomes are poor in patients with advanced or relapsed Ewing sarcoma (EWS) and current treatments have significant short- and long-term side effects. New, less toxic and more effective treatments are urgently needed. MER proto-oncogene tyrosine kinase (MERTK) promotes tumor cell survival, metastasis, and resistance to cytotoxic and targeted therapies in a variety of cancers. MERTK was ubiquitously expressed in five EWS cell lines and five patient samples. Moreover, data from CRISPR-based library screens indicated that EWS cell lines are particularly dependent on MERTK. Treatment with MRX-2843, a first-in-class, MERTK-selective tyrosine kinase inhibitor currently in clinical trials, decreased the phosphorylation of MERTK and downstream signaling in a dose-dependent manner in A673 and TC106 cells and provided potent anti-tumor activity against all five EWS cell lines, with IC50 values ranging from 178 to 297 nM. Inhibition of MERTK correlated with anti-tumor activity, suggesting MERTK inhibition as a therapeutic mechanism of MRX-2843. Combined treatment with MRX-2843 and BCL-2 inhibitors venetoclax or navitoclax provided enhanced therapeutic activity compared to single agents. These data highlight MERTK as a promising therapeutic target in EWS and provide rationale for the development of MRX-2843 for the treatment of EWS, especially in combination with BCL-2 inhibitors.
Pentagonal puckering in a sheet of amorphous graphene
Creators: name: Li, Y.
name: Inam, F.
name: Kumar, A.
name: Thorpe, M. F.
name: Drabold, D. A.
Publisher: name: arXiv
Year: 2011
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Ordered graphene has been extensively studied. In this paper we undertake a first density functional study of it topologically disordered analogues of graphene, in the form of a random network, consisting predominantly of hexagonal rings, but also including pentagons and heptagons. After some preliminaries with crystalline material, we relax various random network models and find that the presence of carbon pentagons induce local curvature, thus breaking the initial planar symmetry, in some analogy with the case of fullerenes. Using density functional theory to calculate the total energy, we find that while the planar state is locally stable, there is a puckered state that has lower energy. The scale of the puckering is consistent with that expected with local maxima and minima associated with pentagons surrounded by larger rings; forming local "buckyball domes".
Cats and the Stag-Hunt Game
Creators: name: Călinescu, Amalia
Publisher: name: figshare
Year: 2023
Subjects: classificationCode: 380102
subject: Behavioural economics
classificationCode: 380199
subject: Applied economics not elsewhere classified

description: This is a game-theoretical interpretation of feline relationship, whether feral or domestic, and it stems from personal experience with cats.
Macrolepiota procera
Creators: name: Jarvis, Charlie
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Fungi
Basidiomycota
Agaricomycetes
Agaricales
Agaricaceae
Macrolepiota
Macrolepiota procera

description: Agaricus extinctorius Linnaeus, Species Plantarum 2: 1174. 1753. "Habitat in fimetis & ad pagos." RCN: 8415. Type not designated. Original material: none traced. Current name:  Macrolepiota procera (Scop.: Fr.) Singer (Agaricaceae). Note: For an extensive review of the varied applications of this name, see Redhead & al. (in Taxon 50: 209-211. 2001). Linnaeus’ name was not accepted by Fries in 1821 and is therefore not sanctioned.
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part A), pp. 252-342 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 267, DOI: 10.5281/zenodo.291971
Optical appearance of numerical black hole solutions in higher derivative gravity
Creators: name: Cui, Yu-Hao
name: Guo, Sen
name: Huang, Yu-Xiang
name: Liang, Yu
name: Lin, Kai
Publisher: name: arXiv
Year: 2024
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: The optical appearance of the numerically black hole solutions within the higher derivative gravity illuminated by an accretion disk context is discussed. We obtain solutions for non-Schwarzschild black holes with r0 = 1, r0 = 2, and r0 = 3. Further analysis of spacetime trajectories reveals properties similar to Schwarzschild black holes, while the r0 = 2 black hole exhibits significant differences. The results reveal the presence of a repulsive potential barrier for the black hole, allowing only particles with energies exceeding a certain threshold to approach it, providing a unique gravitational scenario for non-Schwarzschild black holes. Additionally, the optical images are derived through numerical simulations by discussing the trajectories of photons intheblackholespacetime.The distribution of radiation flux and the effects of gravitational redshift and Doppler shift on the observed radiation flux are considered. Interestingly, previous analyses of the optical appearance of black holes were conducted within the framework of analytic solutions, whereas the analysis of numerical black hole solutions first appears in our analysis.
Action on Ozone
Creators: name: Unknown
Publisher: name: Zenodo
Year: 1996
Subjects: subject: https://id.loc.gov/authorities/subjects/sh85022986.html
subject: https://id.loc.gov/authorities/subjects/sh2018002590.html
subject: https://id.loc.gov/authorities/subjects/sh85084334.html

description: Brochure by United Nations Environment Programme (UNEP) that summarises topics related to ozone eg. ozone depletion, the ozone 'hole', the montreal protocol, the future of the ozone regime.
description: Previously curated at: http://cedadocs.ceda.ac.uk/1002/ The publish date on this item was its original published date. Main files in this record: Action_on_Ozone.pdf Item originally deposited with Centre for Environmental Data Analysis (CEDA) document repository by Miss Poppy Townsend. Transferred to CEDA document repository community on Zenodo on 2022-11-24
Additional file 1 of Long-term prognosis and clinical course of choking-induced cardiac arrest in patients without the return of spontaneous circulation at hospital arrival: a population-based community study from the Shizuoka Kokuho Database
Creators: name: Miyoshi, Takahiro
name: Endo, Hideki
name: Yamamoto, Hiroyuki
name: Shimada, Koki
name: Kumamaru, Hiraku
name: Ichihara, Nao
name: Miyachi, Yoshiki
name: Miyata, Hiroaki
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy

description: Additional file 1.
Interactive tutorial to improve student understanding of single photon experiments involving a Mach-Zehnder Interferometer
Creators: name: Marshman, Emily
name: Singh, Chandralekha
Publisher: name: arXiv
Year: 2016
Subjects: subject: Physics Education (physics.ed-ph)
subject: FOS: Physical sciences

description: We have developed and evaluated a Quantum Interactive Learning Tutorial (QuILT) on a Mach-Zehnder Interferometer with single photons to expose upper-level students in quantum mechanics courses to contemporary quantum optics applications. The QuILT strives to help students develop the ability to apply fundamental quantum principles to physical situations in quantum optics and explore the differences between classical and quantum ideas. The QuILT adapts visualization tools to help students build physical intuition about counter-intuitive quantum optics phenomena with single photons including a quantum eraser setup and focuses on helping them integrate qualitative and quantitative understanding. We discuss findings from in-class evaluations.
Stripe-like quasi-nondiffracting optical lattices
Creators: name: Kartashov, Yaroslav V.
name: Lopez-Aguayo, Servando
name: Vysloukh, Victor A.
name: Torner, Lluis
Publisher: name: arXiv
Year: 2011
Subjects: subject: Optics (physics.optics)
subject: Pattern Formation and Solitons (nlin.PS)
subject: FOS: Physical sciences

description: We introduce stripe-like quasi-nondiffracting lattices that can be generated via spatial spectrum engineering. The complexity of the spatial shapes of such lattices and the distance of their almost diffractionless propagation depend on the width of their ring-like spatial spectrum. Stripe-like lattices are extended in one direction and are localized in the orthogonal one, thereby creating either straight or curved in any desired fashion optically-induced channels that may be used for optical trapping, optical manipulation, or optical lattices for quantum and nonlinear optics applications. As an illustrative example, here we show their potential for spatial soliton control. Complex networks consisting of several intersecting or joining stripe-like lattices suited to a particular application may also be constructed.
description: 6 pages, 4 figures, to appear in Optics Express
Exploring COVID-19 Vaccine Decision Making: Insights from ‘One-Shot Wonders’ and ‘Booster Enthusiasts’
Creators: name: Piltch-Loeb, Rachael
name: Parcesepe, Angela M.
name: Nuñez Sahr, Josefina
name: You, William
name: Penrose, Kate
name: Nash, Denis
name: Chan, Bai Xi Jasmine
name: Balasubramanian, Subha
name: Wainberg, Milton Leonard
Publisher: name: MDPI
Year: 2024

description: Within the USA, the uptake of the updated COVID-19 vaccines is suboptimal despite health authority recommendations. This study used qualitative methods to examine factors influencing COVID-19 vaccine decision making and the effects of anxiety and depression on these decisions within the CHASING COVID Cohort (C3). Between October and December 2023, we conducted 25 interviews with participants from 16 different US states, 14 of whom endorsed recent symptoms of anxiety and/or depression. Using grounded theory methodology for coding and thematic analysis, we categorized participants into “One-Shot Wonders” and “Booster Enthusiasts”. Our findings indicate that the US COVID-19 vaccination environment has shifted from active promotion to a notable absence of COVID-19 discussions, leading to reduced worry about infection and severe illness, diminished perception of the benefits of the vaccine on personal and community levels, and fewer cues to action. Initially influential factors like family, personal experiences, and physician recommendations lost impact over time. Although the relationship between symptoms of depression and anxiety and vaccination was not prominent, one case highlighted a direct relationship. The study emphasizes the importance of timely and accurate public health messaging adaptable to individuals’ needs and misconceptions, highlighting the need for dynamic communication strategies in future initiatives with rapidly changing landscapes.
Agaricus fimetarius Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Fungi
Basidiomycota
Agaricomycetes
Agaricales
Agaricaceae
Agaricus
Agaricus fimetarius

description: Agaricus fimetarius Linnaeus, Species Plantarum 2: 1174. 1753. "Habitat in Fimetis." RCN: 8434. Type not designated. Original material: [icon] in Sterbeeck, Theatr. Fung.: 218, t. 22, f. J, K, L. 1675; [icon] in Buxbaum, Pl. Minus Cognit. Cent. 4: 16, t. 27, f. 1. 1733. Current name:  Agaricus fimetarius L. (Agaricaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part A), pp. 252-342 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 267, DOI: 10.5281/zenodo.291971
Phase structure of the $O(2)$ ghost model with higher-order gradient term
Creators: name: Péli, Z.
name: Nagy, S.
name: Sailer, K.
Publisher: name: arXiv
Year: 2016
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The phase structure and the infrared behaviour of the Euclidean 3-dimensional $O(2)$ symmetric ghost scalar field model with higher-order derivative term has been investigated in Wegner and Houghton's renormalization group framework. The symmetric phase in which no ghost condensation occurs and the phase with restored symmetry but with a transient presence of a ghost condensate have been identified. Finiteness of the correlation length at the phase boundary hints to a phase transition of first order. The results are compared with those for the ordinary $O(2)$ symmetric scalar field model.
description: 15 pages, 13 figures
Aharonov-Bohm and relativistic Corbino effects in graphene: A comparative study of two quantum interference phenomena
Creators: name: Rycerz, Adam
Publisher: name: arXiv
Year: 2011
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: This is an analytical study of magnetic fields effects on the conductance, the shot noise power, and the third charge-transfer cumulant for Aharonov-Bohm rings and Corbino disks in graphene. The two distinct physical mechanisms lead to very similar magnetotransport behaviors. Differences are unveiled when discussing the third-cumulant dependence on magnetic fields.
description: Typos corrected. A version to be published in Acta Physica Polonica A. Presented during "The European Conference: Physics of Magnetism 2011" (PM'11), June 27 - July 1, 2011 Poznan, Poland
Britain in Space
Creators: name: Unknown
Publisher: name: Zenodo
Year: 9999
Subjects: subject: https://id.loc.gov/authorities/subjects/sh85125953.html
subject: https://id.loc.gov/authorities/subjects/sh2018002590.html
subject: https://id.loc.gov/authorities/subjects/sh85040468.html

description: British National Space Centre (BNSC) brochure that gives a brief account of Britain's space activities, and to illustrate the scientific and technological capability that exists in the UK.
description: Previously curated at: http://cedadocs.ceda.ac.uk/1003/ The publish date on this item was its original published date. Main files in this record: Britain_in_Space_(BNSC).pdf Item originally deposited with Centre for Environmental Data Analysis (CEDA) document repository by Miss Poppy Townsend. Transferred to CEDA document repository community on Zenodo on 2022-11-24
Deterministic separation of arbitrary photon pair states in integrated quantum circuits
Creators: name: Marchildon, Ryan P.
name: Helmy, Amr S.
Publisher: name: arXiv
Year: 2015
Subjects: subject: Quantum Physics (quant-ph)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: Entangled photon pairs generated within integrated devices must often be spatially separated for their subsequent manipulation in quantum circuits. Separation that is both deterministic and universal can in principle be achieved through anti-coalescent two-photon quantum interference. However, such interference-facilitated pair separation (IFPS) has not been extensively studied in the integrated setting, where the strong polarization and wavelength dependencies of integrated couplers -- as opposed to bulk-optics beamsplitters -- can have important implications for performance beyond the identical-photon regime. This paper provides a detailed review of IFPS and examines how these dependencies impact separation fidelity and interference visibility. Focus is given to IFPS mediated by an integrated directional coupler. The analysis applies equally to both on-chip and in-fiber implementations, and can be expanded to other coupler architectures such as multimode interferometers. When coupler dispersion is present, the separation performance can depend on photon bandwidth, spectral entanglement, and the linearity of the dispersion. Under appropriate conditions, reduction in the separation fidelity due to loss of non-classical interference can be perfectly compensated for by classical wavelength demultiplexing effects. This work informs the design as well as the performance assessment of circuits for achieving universal photon pair separation for states with tunable arbitrary properties.
description: 11 pages, 14 figures; to be published in Laser & Photonics Reviews
Bolbitius tibitans
Creators: name: Jarvis, Charlie
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Fungi
Basidiomycota
Agaricomycetes
Agaricales
Bolbitiaceae
Bolbitius
Bolbitius tibitans

description: Agaricus fragilis Linnaeus, Species Plantarum 2: 1175. 1753, nom. illeg. "Habitat ad ambulacra." RCN: 8431. Type not designated. Original material: [icon] in Vaillant, Bot. Paris.: 60, t. 11, f. 16, 17, 18. 1727. Current name:  Bolbitius tibitans (Bull.: Fr.) Fr. (Bolbitiaceae). Note: Index Fungorum observes that this is a homonym of A. fragilis Batsch: Fr. 1789, nec Pers.: Fr. 1801, and therefore illegitimate.
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part A), pp. 252-342 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 267, DOI: 10.5281/zenodo.291971
Ultrasound-Compatible Electrode for Functional Electrical Stimulation
Creators: name: Xue, Xiangming
name: Shukla, Darpan
name: Ganesh, Vidisha
name: Kreager, Benjamin C.
name: Zhu, Yong
name: Cai, Qianqian
name: Sharma, Nitin
name: Moon, Sunho
name: Jiang, Xiaoning
name: Wu, Huaiyu
Publisher: name: MDPI
Year: 2024

description: Functional electrical stimulation (FES) is a vital method in neurorehabilitation used to reanimate paralyzed muscles, enhance the size and strength of atrophied muscles, and reduce spasticity. FES often leads to increased muscle fatigue, necessitating careful monitoring of the patient’s response. Ultrasound (US) imaging has been utilized to provide valuable insights into FES-induced fatigue by assessing changes in muscle thickness, stiffness, and strain. Current commercial FES electrodes lack sufficient US transparency, hindering the observation of muscle activity beneath the skin where the electrodes are placed. US-compatible electrodes are essential for accurate imaging and optimal FES performance, especially given the spatial constraints of conventional US probes and the need to monitor muscle areas directly beneath the electrodes. This study introduces specially designed body-conforming US-compatible FES (US-FES) electrodes constructed with a silver nanowire/polydimethylsiloxane (AgNW/PDMS) composite. We compared the performance of our body-conforming US-FES electrode with a commercial hydrogel electrode. The findings revealed that our US-FES electrode exhibited comparable conductivity and performance to the commercial one. Furthermore, US compatibility was investigated through phantom and in vivo tests, showing significant compatibility even during FES, unlike the commercial electrode. The results indicated that US-FES electrodes hold significant promise for the real-time monitoring of muscle activity during FES in clinical rehabilitative applications.
Additional file 1 of Changes in working status after cancer diagnosis and socio-demographic, clinical, work-related, and psychological factors associated with it
Creators: name: Kang, Danbee
name: Bae, Ka Ryeong
name: Kim, Ho Young
name: Ahn, Yeojin
name: Kim, Nayeon
name: Shim, Youngmog
name: Sohn, Tae Sung
name: Lee, Woo Yong
name: Baek, Ji Hyun
name: Kweon, Sun-Seog
name: Cho, Juhee
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology

description: Additional file 1:Supplement Table 1. Factors associated with discontinued working after cancer diagnosis by time since diagnosis (N = 533).
Magnetism in doped two-dimensional honeycomb structures of III-V binary compounds
Creators: name: Zberecki, K.
Publisher: name: arXiv
Year: 2011
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Using first-principles plane-wave calculations systematic study of magnetic properties of doped two-dimensional honeycomb structures of III-V binary compounds have been conducted, either for magnetic or nonmagnetic dopants. Calculations show, that all cases where magnetic moment is non-zero are energetically more favorable. For such cases band structure and (partial) density of states were calculated and analyzed in detail. The possible applications of these structures were also discussed.
description: 5 pages, 4 figures, 2 tables, sub. to phys. stat. sol.(b)
Transient growth in Rayleigh-Bénard-Poiseuille/Couette convection
Creators: name: Jerome, J. John Soundar
name: Chomaz, Jean-Marc
name: Huerre, Patrick
Publisher: name: arXiv
Year: 2016
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: An investigation of the effect of a destabilizing cross-stream temperature gradient on the transient growth phenomenon of plane Poiseuille flow and plane Couette flow is presented. Only the streamwise-uniform and nearly streamwise-uniform disturbances are highly influenced by the Rayleigh number Ra and Prandtl number Pr. The maximum optimal transient growth G max of streamwise-uniform disturbances increases slowly with increasing Ra and decreasing Pr. For all Ra and Pr, at moderately large Reynolds numbersRe, the supremum of G max is always attained for streamwise-uniform perturbations (or nearly streamwise-uniform perturbations, in the case of plane Couette flow) which produce large streamwise streaks and Rayleigh-Bénard convection rolls (RB). The optimal growth curves retain the same large-Reynolds-number scaling as in pure shear flow. A 3D vector model of the governing equations demonstrates that the short-time behavior is governed by the classical lift-up mechanism and that the influence of Ra on this mechanism is secondary and negligible. The optimal input for the largest long-time response is given by the adjoint of the dominant eigenmode with respect to the energy scalar product: the RBeigenmode without its streamwise velocity component. These short-time and long-time responses depict, to leading order, the optimal transient growth G(t). At moderately large Ra (or small Pr at a fixed Ra), the dominant adjoint mode is a good approximation to the optimal initial condition for all time. Over a general class of norms that can be considered as growth functions, the results remain qualitatively similar, for example, the dominant adjoint eigenmode still approximates the maximum optimal response.
description: accepted for publication (Mar. 2012)
Strong-coupling description of the high-temperature superconductivity in the molecular hydrogen
Creators: name: Szczesniak, R.
name: Jarosik, M. W.
Publisher: name: arXiv
Year: 2011
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: The detailed study of the selected thermodynamic properties of the superconducting phase in the molecular hydrogen under the pressure at 428 GPa has been presented. For the increasing value of the Coulomb pseudopotential, $μ^{*}\in<0.08,0.15>$, the following results have been obtained: (i) the critical temperature decreases from 179 K to 141 K, (ii) the ratio $R_{1}\equivΔ(0)/k_{B}T_{C}$ differs noticeably from the BCS value: $R_{1}\in<4.71,3.60>$; (iii) the electron effective mass is large and grows slightly together with the temperature ($[m^{*}_{e}/m_{e}]_{\rm max} = 2.2$ for $T = T_{C}$).
Spectroscopy of phonons in dirty superconducting contacts
Creators: name: Yanson, I. K.
name: Bobrov, N. L.
name: Rybal'chenko, L. F.
name: Fisun, V. V.
Publisher: name: arXiv
Year: 2016
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: The nonlinearities of current-voltage characteristics (IVC) of superconducting niobium point contacts for voltages of the order of the characteristic phonon frequencies are investigated. It is shown that in limiting by dirty contacts ${{l}_{1}}\ll d$ , (${{l}_{1}}$ is the momentum mean-free path of electrons), features are observed on the IVC corresponding to maxima in the first or second derivatives and are situated at energies close to the characteristic phonon energies. These features are due to the energy dependence of the excess current, since the nonlinearity of the IVC in the normal state is several times smaller in absolute magnitude, and its second derivative is monotonic. For a contact diameter $d$ of the order of several tens of angstroms (the contact resistance is of the order of 100 $Ω$), the thermal effects can be neglected. It is assumed that in the region of the constriction, the characteristic lengths of the system satisfy the relation $ξ\gtrsim d>{{Λ}_{\varepsilon }}$ (${{Λ}_{\varepsilon }}$ is the diffusion length for energy relaxation of the electrons, $ξ$ is the coherence length) which makes possible inelastic transitions of electrons between pair chemical potentials differing in energy by an account $eV$ ($V$ is the voltage drop across the contact)
description: 8 pages, 4 figures
Calocybe gambosa
Creators: name: Jarvis, Charlie
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Fungi
Basidiomycota
Basidiomycetes
Agaricales
Tricholomataceae
Calocybe
Calocybe gambosa

description: Agaricus georgii Linnaeus, Species Plantarum 2: 1173. 1753. "Habitat in Sylvis." RCN: 8429. Type not designated. Original material: [icon] in Sterbeeck, Theatr. Fung.: 63, t. 4, f. C. 1675. Current name:  Calocybe gambosa (Fr.: Fr.) Donk (Tricholomataceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part A), pp. 252-342 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 267, DOI: 10.5281/zenodo.291971
Enhancing Representation Learning of EEG Data with Masked Autoencoders
Creators: name: Zhou, Yifei
name: Liu, Sitong
Publisher: name: arXiv
Year: 2024
Subjects: subject: Human-Computer Interaction (cs.HC)
subject: FOS: Computer and information sciences

description: Self-supervised learning has been a powerful training paradigm to facilitate representation learning. In this study, we design a masked autoencoder (MAE) to guide deep learning models to learn electroencephalography (EEG) signal representation. Our MAE includes an encoder and a decoder. A certain proportion of input EEG signals are randomly masked and sent to our MAE. The goal is to recover these masked signals. After this self-supervised pre-training, the encoder is fine-tuned on downstream tasks. We evaluate our MAE on EEGEyeNet gaze estimation task. We find that the MAE is an effective brain signal learner. It also significantly improves learning efficiency. Compared to the model without MAE pre-training, the pre-trained one achieves equal performance with 1/3 the time of training and outperforms it in half the training time. Our study shows that self-supervised learning is a promising research direction for EEG-based applications as other fields (natural language processing, computer vision, robotics, etc.), and thus we expect foundation models to be successful in EEG domain.
Galesus punctulatus Kieffer 1907
Creators: name: Notton, David G.
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Diapriidae
Galesus
Galesus punctulatus

description: Galesus punctulatus Kieffer, 1907: 301.
Valid name
Coptera punctulata (Kieffer, 1907).
Summary of types
Syntype ♂, BMNH number 9.653.
Primary type data
Type; Pt/ Natal/ 56-63; Galesus / punctulatus/ Kieffer/ named by J.J.Kieffer; BMNH(E) 1856-63 / South Africa:/ Port Natal:/ coll. Plant:/ purch. Stevens.
Type locality
South Africa, Durban (as Port Natal).
Remarks
This species was described from an unspecified number of males, of which one was found. The syntype is micropinned, the left fore wing is mounted separately and the metasoma, left hind wing and part of the right mid tarsus are missing.
description: Published as part of Notton, David G., 2014, A catalogue of the types of Diapriinae (Hymenoptera, Diapriidae) at the Natural History Museum, London, pp. 1-123 in European Journal of Taxonomy 75 on page 49, DOI: 10.5852/ejt.2014.75, http://zenodo.org/record/3862773
Model of communities isolation at hierarchical modular networks
Creators: name: Kondratiuk, Paweł
name: Hołyst, Janusz A.
Publisher: name: arXiv
Year: 2011
Subjects: subject: Physics and Society (physics.soc-ph)
subject: Social and Information Networks (cs.SI)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: The model of community isolation was extended to the case when individuals are randomly placed at nodes of hierarchical modular networks. It was shown that the average number of blocked nodes (individuals) increases in time as a power function, with the exponent depending on network parameters. The distribution of time when the first isolated cluster appears is unimodal, non-gaussian. The developed analytical approach is in a good agreement with the simulation data.