cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Distributed management of Personal Rapid Transit (PRT) vehicles under unusual transport conditions
Creators: name: Daszczuk, Wiktor B.
name: Mieścicki, Jerzy
Publisher: name: arXiv
Year: 2017
Subjects: subject: Systems and Control (eess.SY)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: C.2.4
subject: 68U20

description: The paper presents a flexibility of management of vehicles in Personal Rapid Transit (PRT) network. The algorithm used for delivering empty vehicles for waiting passengers is based on multiparameter analysis. Due to its distributed construction, the algorithm has a horizon parameter, which specifies the maximum distance between stations the communications is performed. Every decision is made basing on an information about situation (number of vehicles standing at a station, number of vehicles travelling to a station, number of passengers waiting) sent between stations, without any central data base containing traffic conditions. The simulation of the traffic in random case (typical) and in unusual case of delivering people to a social event occurring at single place is presented. It is shown that simple manipulation with horizon parameter allows to adapt the network to extremely uneven demand and destination choice.
description: 6 pages, 1 figure, 3 tables
Additional file 2: of A protocol for a systematic review of economic evaluation studies conducted on neonatal systemic infections in South Asia
Creators: name: Murthy, Shruti
name: John, Denny
name: Isadora Godinho
name: Godinho, Myron
name: Vasudeva Guddattu
name: N. Sreekumaran Nair
Publisher: name: figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Computational Biology

description: Planned outcomes of the systematic review, Preliminary search strategy for MEDLINE (Ovid) and Draft data extraction form. Consists of supplementary tables detailing the (1) Planned outcomes and the respective outcome measures of the systematic review, (2) the preliminary search strategy for MEDLINE (via Ovid) and (3) A draft data extraction form displaying the items for which data will be extracted in the systematic review. (DOCX 25Â kb)
In silico investigation of riboswitches in fungi: structural and dynamical insights into TPP riboswitches in Aspergillus oryzae
Creators: name: Vargas-Junior, Valdemir
name: Antunes, Deborah
name: Guimarães, Ana Carolina
name: Caffarena, Ernesto
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Ecology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Riboswitches are RNA sensors affecting post-transcriptional processes through their ability to bind to small molecules. Thiamine pyrophosphate (TPP) riboswitch plays a crucial role in regulating genes involved in synthesizing or transporting thiamine and phosphorylated derivatives in bacteria, archaea, plants, and fungi. Although TPP riboswitch is reasonably well known in bacteria, there is a gap in the knowledge of the fungal TPP riboswitches structure and dynamics, involving mainly sequence variation and TPP interaction with the aptamers. On the other hand, the increase of fungal infections and antifungal resistance raises the need for new antifungal therapies. In this work, we used computational approaches to build three-dimensional models for the three TPP riboswitches identified in Aspergillus oryzae, in which we studied their structure, dynamics, and binding free energy change (ΔGbind) with TPP. Interaction patterns between the TPP and the surrounding nucleotides were conserved among the three models, evidencing high structural conservation. Furthermore, we show that the TPP riboswitch from the A. oryzae NMT1 gene behaves similarly to the E. coli thiA gene concerning the ΔGbind. In contrast, mutations in the fungal TPP riboswitches from THI4 and the nucleoside transporter genes led to structural differences, affecting the binding-site volume, hydrogen bond occupancy, and ΔGbind. Besides, the number of water molecules surrounding TPP influenced the ΔGbind considerably. Notably, our ΔGbind estimation agreed with previous experimental data, reinforcing the relationship between sequence conservation and TPP interaction.
MOESM4 of Relationship between the Northern Pacific Gyre Oscillation and tree-ring cellulose oxygen isotopes in northeastern Japan
Creators: name: Sakashita, Wataru
name: Miyahara, Hiroko
name: Yokoyama, Yusuke
name: Aze, Takahiro
name: Obrochta, Stephen
name: Nakatsuka, Takeshi
Publisher: name: figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Plant Biology

description: Additional file 4: Table S1. Correlation coefficients between inverted MJ precipitation in Sendai and NPGO index.
RNA folding and functions of RNA helicases in ribosome biogenesis
Creators: name: Mitterer, Valentin
name: Pertschy, Brigitte
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Physical Sciences not elsewhere classified
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Developmental Biology
subject: Cancer
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Eukaryotic ribosome biogenesis involves the synthesis of ribosomal RNA (rRNA) and its stepwise folding into the unique structure present in mature ribosomes. rRNA folding starts already co-transcriptionally in the nucleolus and continues when pre-ribosomal particles further maturate in the nucleolus and upon their transit to the nucleoplasm and cytoplasm. While the approximate order of folding of rRNA subdomains is known, especially from cryo-EM structures of pre-ribosomal particles, the actual mechanisms of rRNA folding are less well understood. Both small nucleolar RNAs (snoRNAs) and proteins have been implicated in rRNA folding. snoRNAs hybridize to precursor rRNAs (pre-rRNAs) and thereby prevent premature folding of the respective rRNA elements. Ribosomal proteins (r-proteins) and ribosome assembly factors might have a similar function by binding to rRNA elements and preventing their premature folding. Besides that, a small group of ribosome assembly factors are thought to play a more active role in rRNA folding. In particular, multiple RNA helicases participate in individual ribosome assembly steps, where they are believed to coordinate RNA folding/unfolding events or the release of proteins from the rRNA. In this review, we summarize the current knowledge on mechanisms of RNA folding and on the specific function of the individual RNA helicases involved. As the yeast Saccharomyces cerevisiae is the organism in which ribosome biogenesis and the role of RNA helicases in this process is best studied, we focused our review on insights from this model organism, but also make comparisons to other organisms where applicable.
Additional file 4: of Double Up Food Bucks program effects on SNAP recipients' fruit and vegetable purchases
Creators: name: Steele-Adjognon, Marie
name: Weatherspoon, Dave
Publisher: name: figshare
Year: 2017
Subjects: subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Before versus After DUFB Implementation Regression Results. Study Supermarket Receipt Data. Receipt data from an independent supermarket in Detroit, Michigan that participated in the DUFB program was used for this analysis. The dataset includes all store transactions from May 2014 through January 2015. (DOCX 75Â kb)
RNA polymerase II is recruited to DNA double-strand breaks for dilncRNA transcription in Drosophila
Creators: name: Böttcher, Romy
name: Schmidts, Ines
name: Nitschko, Volker
name: Duric, Petar
name: Förstemann, Klaus
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Physical Sciences not elsewhere classified
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Mental Health
subject: Computational Biology

description: DNA double-strand breaks are among the most toxic lesions that can occur in a genome and their faithful repair is thus of great importance. Recent findings have uncovered local transcription that initiates at the break and forms a non-coding transcript, called damage-induced long non-coding RNA (dilncRNA), which helps to coordinate the DNA transactions necessary for repair. We provide nascent RNA sequencing-based evidence that RNA polymerase II transcribes the dilncRNA in Drosophila and that this is more efficient for DNA breaks in an intron-containing gene, consistent with the higher damage-induced siRNA levels downstream of an intron. The spliceosome thus stimulates recruitment of RNA polymerase II to the break, rather than merely promoting the annealing of sense and antisense RNA to form the siRNA precursor. In contrast, RNA polymerase III nascent RNA libraries did not contain reads corresponding to the cleaved loci and selective inhibition of RNA polymerase III did not reduce the yield of damage-induced siRNAs. Finally, the damage-induced siRNA density was unchanged downstream of a T8 sequence, which terminates RNA polymerase III transcription. We thus found no evidence for a participation of RNA polymerase III in dilncRNA transcription in cultured Drosophila cells.
Additional file 2: of Interventions for domestic violence among pregnant women in low- and middle-income countries: a systematic review protocol
Creators: name: Diksha Sapkota
name: Baird, Kathleen
name: Amornrat Saito
name: Anderson, Debra
Publisher: name: figshare
Year: 2017
Subjects: subject: Medicine
subject: Biotechnology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: MEDLINE search strategy. Strategy used to search articles in MEDLINE (Ovid) database. (DOCX 21Â kb)
Cellular miR-150-5p may have a crucial role to play in the biology of SARS-CoV-2 infection by regulating nsp10 gene
Creators: name: Akula, Shaw M.
name: Bolin, Paul
name: Cook, Paul P.
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Immunology
subject: FOS: Clinical medicine
subject: Information Systems not elsewhere classified
subject: Cancer
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: The role for circulating miRNAs as biomarkers of the COVID-19 disease remains uncertain. We analysed the circulating miRNA profile in twelve COVID-19 patients with moderate-severe disease. This analysis was conducted by performing next generation sequencing (NGS) followed by real-time polymerase chain reaction (RT-qPCR). Compared with healthy controls, we detected significant changes in the circulating miRNA profile of COVID-19 patients. The miRNAs that were significantly altered in all the COVID-19 patients were miR-150-5p, miR-375, miR-122-5p, miR-494-3p, miR-3197, miR-4690-5p, miR-1915-3p, and miR-3652. Infection assays performed using miRNA mimics in HEK-293 T cells determined miR-150-5p to have a crucial role in SARS-CoV-2 infection and this was based on the following data: (i) miR-150-5p mimic lowered in vitro SARS-CoV-2 infection; (ii) miR-150-5p inhibitor reversed the effects of miR-150-5p mimic on SARS-CoV-2 infection of cells; and (iii) a novel miRNA recognition element (MRE) was identified in the coding strand of SARS-CoV-2 nsp10, the expression of which could be inhibited by miR-150-5p mimic. Our findings identified crucial miRNA footprints in COVID-19 patients with moderate-severe disease. A combination of co-transfection and Western blotting experiments also determined the ability of miR-150-5p to inhibit SARS-CoV-2 infection via directly interacting with MRE in the coding strand of nsp10. Our investigation showed that a sharp decline in the miR-150-5p plasma levels in COVID-19 patients may support enhanced SARS-CoV-2 infection. Furthermore, this study provides insight into one possible mechanism by which COVID-19-induced changes to miR-150-5p levels may promote SARS-CoV-2 infection via modulating nsp10 expression.
Children's acquisition of Mandarin tones in context
Creators: name: Tang, Ping
Publisher: name: Macquarie University
Year: 2022
Subjects: Other education not elsewhere classified

description: Mandarin is a tonal language with four lexical tones and two contextual tones, i.e., neutral tone and tone sandhi, exhibiting tonal variations across contexts. Previous studies found that Mandarin-learning children acquire lexical tones early (before 3yrs.), but the neutral tone and tone sandhi are later acquired (after 4;6). Children with hearing impairment/cochlear implants (CIs) have problems in acquiring lexical tones unless implanted early or have long CI experience, since CIs do not transmit pitch information effectively; it is unclear how those implanted early perform on contextual tones. The general aim of this thesis was therefore to better understand the acquisition of contextual tones by both typically developing children and those with hearing impairment using acoustic, rather than perceptual measures. This thesis consisted of seven studies. Firstly, we examined how contextua ltones are realized in children's language input, i.e., infant-directed speech (IDS) and clear speech, where slower, hyperarticulated speech (as directed to children or possibly hearing impaired populations) might destroy the context for appropriate realization of contextual tones, thus potentially explaining the later acquisition of these tonal processes (Studies 1 & 2). However, our findings showed that the key features of contextual tones are well realized in both registers, suggesting that later acquisition is not due to the input. Next, we examined children's contextual tone productions in novel (rather than known) items, exploring when their knowledge of contextual tones becomes productive (Studies 3, 4 & 5). The results showed that (1) normal hearing 3-year-olds have already acquired productive knowledge of contextual tones, correctly producing tonal variations across contexts, though adult-like acoustic implementation is not fully mastered until age 5; (2) children with CIs face challenges in producing correct contextual tones, but early implantation (before age 2) facilitates lexical and contextual tonal acquisition. Finally, we tested children's perception of lexical tones and tone sandhi in novel compounds using a mispronunciation/eyetracking task (Studies 6 & 7). The results showed that, (1) all normal hearing participants could detect lexical tone mispronunciations, but none were sensitive to the novel compound tone sandhi mispronunciations; and (2) even detecting lexical tone mispronunciations was a challenge for the children with CIs. Taken together, the findings of this thesis suggest that contextual tones are not later acquired by normal hearing children, and acquiring typical contextual tones is possible for children with hearing impairment as long as they receive CIs early.
Anomaly induced transport in non-anomalous currents
Creators: name: Megias, Eugenio
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Quantum anomalies are one of the subtlest properties of relativistic field theories. They give rise to non-dissipative transport coefficients in the hydrodynamic expansion. In particular a magnetic field can induce an anomalous current via the chiral magnetic effect. In this work we explore the possibility that anomalies can induce a chiral magnetic effect in non-anomalous currents as well. This effect is implemented through an explicit breaking of the symmetries.
description: 8 pages, 1 figure. Presented by E.Megias at the 5th International Conference on New Frontiers in Physics (ICNFP 2016), 6-14 July 2016, Kolymbari, Crete, Greece; v2 added references
Chemical bonding and electronic-structure in MAX phases as viewed by X-ray spectroscopy and density functional theory
Creators: name: Magnuson, Martin
name: Mattesini, Maurizio
Publisher: name: arXiv
Year: 2016
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Chemical Physics (physics.chem-ph)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: This is a critical review of MAX-phase carbides and nitrides from an electronic-structure and chemical bonding perspective. This large group of nanolaminated materials is of great scientific and technological interest and exhibit a combination of metallic and ceramic features. These properties are related to the special crystal structure and bonding characteristics with alternating strong M-C bonds in high-density MC slabs, and relatively weak M-A bonds between the slabs. Here, we review the trend and relationship between the chemical bonding, conductivity, elastic and magnetic properties of the MAX phases in comparison to the parent binary MX compounds with the underlying electronic structure probed by polarized X-ray spectroscopy. Spectroscopic studies constitute important tests of the results of state-of-the-art electronic structure density functional theory that is extensively discussed and are generally consistent. By replacing the elements on the M, A, or X-sites in the crystal structure, the corresponding changes in the conductivity, elasticity, magnetism and other materials properties makes it possible to tailor the characteristics of this class of materials by controlling the strengths of their chemical bonds.
description: 46 Pages, 23 Figures, 6 Tables
Ion-Induced Molecular Growth in Clusters of Small Hydrocarbon Chains
Creators: name: Gatchell, Michael
name: Delaunay, Rudy
name: D'Angelo, Giovanna
name: Mika, Arkadiusz
name: Kulyk, Kostiantyn
name: Domaracka, Alicja
name: Rousseau, Patrick
name: Zettergren, Henning
name: Huber, Bernd A.
name: Cederquist, Henrik
Publisher: name: arXiv
Year: 2017
Subjects: subject: Atomic and Molecular Clusters (physics.atm-clus)
subject: FOS: Physical sciences

description: We report on studies of collisions between 3 keV Ar$^+$ projectile ions and neutral targets of isolated 1,3-butadiene (C$_4$H$_6$) molecules and cold, loosely bound clusters of these molecules. We identify molecular growth processes within the molecular clusters that appears to be driven by knockout processes and that could result in the formation of (aromatic) ring structures. These types of reactions are not unique to specific projectile ions and target molecules, but will occur whenever atoms or ions with suitable masses and kinetic energies collide with aggregates of matter, such as carbonaceous grains in the interstellar medium or aerosol nanoparticles in the atmosphere.
description: 8 pages, 6 figures, Accepted for publication in Physical Chemistry Chemical Physics 2017
Some properties of the states at the hidden-strangeness mixed ${1 \over 2}^+ + {1 \over 2}^-$ heavy meson pair threshold in $e^+e^-$ annihilation
Creators: name: Voloshin, M. B.
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The threshold behavior of $e^+ e^-$ annihilation is considered in the channels $B_{s0} \bar B_s^* + c.c.$, $B_{s1} \bar B_s + c.c.$, and $B_{s1} \bar B_s^* +c.c.$, where $B_{s0}$ and $B_{s1}$ are the excited bottom-strange $J^P=0^+$ and $J^P = 1^+$ mesons. It is argued that due to the heavy quark spin symmetry (HQSS) only one coherent combination of the first two channels is produced in the $S$ wave as well as the third channel. Thus, if there exist threshold molecular peaks in the considered channels, only two of such peaks can be formed in the annihilation. The properties of such threshold states are discussed, including the heavy-light spin structure and the related transitions to bottomonium plus light mesons, as well as mixing with the channels with and without hidden strangeness.
description: 9 pages
Cellular miR-150-5p may have a crucial role to play in the biology of SARS-CoV-2 infection by regulating nsp10 gene
Creators: name: Akula, S. M.
name: Bolin, Paul
name: Cook, Paul P.
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Immunology
subject: FOS: Clinical medicine
subject: Information Systems not elsewhere classified
subject: Cancer
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: The role for circulating miRNAs as biomarkers of the COVID-19 disease remains uncertain. We analysed the circulating miRNA profile in twelve COVID-19 patients with moderate-severe disease. This analysis was conducted by performing next generation sequencing (NGS) followed by real-time polymerase chain reaction (RT-qPCR). Compared with healthy controls, we detected significant changes in the circulating miRNA profile of COVID-19 patients. The miRNAs that were significantly altered in all the COVID-19 patients were miR-150-5p, miR-375, miR-122-5p, miR-494-3p, miR-3197, miR-4690-5p, miR-1915-3p, and miR-3652. Infection assays performed using miRNA mimics in HEK-293 T cells determined miR-150-5p to have a crucial role in SARS-CoV-2 infection and this was based on the following data: (i) miR-150-5p mimic lowered in vitro SARS-CoV-2 infection; (ii) miR-150-5p inhibitor reversed the effects of miR-150-5p mimic on SARS-CoV-2 infection of cells; and (iii) a novel miRNA recognition element (MRE) was identified in the coding strand of SARS-CoV-2 nsp10, the expression of which could be inhibited by miR-150-5p mimic. Our findings identified crucial miRNA footprints in COVID-19 patients with moderate-severe disease. A combination of co-transfection and Western blotting experiments also determined the ability of miR-150-5p to inhibit SARS-CoV-2 infection via directly interacting with MRE in the coding strand of nsp10. Our investigation showed that a sharp decline in the miR-150-5p plasma levels in COVID-19 patients may support enhanced SARS-CoV-2 infection. Furthermore, this study provides insight into one possible mechanism by which COVID-19-induced changes to miR-150-5p levels may promote SARS-CoV-2 infection via modulating nsp10 expression.
title: ADCO, Cartulaire de Cîteaux pour les possessions de Saulon-la-Chapelle et Saulon-la-Rue, Fénay, Noiron et la rivière Cent-fonds (XVe siècle), Cart. 179 (11 H 1075), 70 folios, f. 0069
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2015
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Cartulaire de Cîteaux pour les possessions de Saulon-la-Chapelle et Saulon-la-Rue, Fénay, Noiron et la rivière Cent-fonds (XVe siècle), Archives départementales de la Côte-d'Or, Cart. 179 (11 H 1075), 70 folios, f. 0069, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de Cîteaux pour les possessions de Saulon-la-Chapelle et Saulon-la-Rue, Fénay, Noiron et la rivière Cent-fonds (XVe siècle), Archives départementales de la Côte-d'Or, Cart. 179 (11 H 1075), 70 folios, f. 0069, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Tricks of the trade: an examination of the confluences between documentary and deception, inspired by the symbiotic relationship between filmmaker and con artist in Forbidden lie$
Creators: name: Broinowski, Anna
Publisher: name: Macquarie University
Year: 2022
Subjects: Other education not elsewhere classified

description: This doctoral thesis combines Anna Broinowski's dramatised documentary feature, Forbidden lie$ (2007), with a scholarly exegesis examining the confluences between documentary filmmaking and deception. This critical writing has been inspired by the symbiotic relationship between "honest" filmmaker and "dishonest" subject in Broinowski's film. The written component, Tricks of the trade, presents a detailed examination of the ways in which the nonfiction "real" has been constructed and consumed over cinema's one hundred and twenty year history. In the process, parallels are revealed between the techniques used by documentary filmmakers and the techniques used by magicians, forgers, propagandists, con artists and other professional dissemblers, to deceive, seduce, entertain, persuade and "trick" their audiences or "marks". Tricks of the trade advances two propositions: 1, that deception is as necessary to documentary as it is to fiction; and, 2, despite this, documentary remains a valid and important art form. Documentary's ability to successfully engage audiences in the future, it is suggested, depends in part upon the acknowledgement (rather than concealment) of its deceptive techniques.
Additional file 5: Figure S3. of Phosphoproteomics reveals network rewiring to a pro-adhesion state in annexin-1-deficient mammary epithelial cells
Creators: name: Asfa Alli-Shaik
name: Wee, Sheena
name: Lim, Lina
name: Jayantha Gunaratne
Publisher: name: figshare
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Comparison of quantified proteome and phosphoproteome in ANXA1-deficient mammary epithelial cells. A Number of class I phosphorylation sites with corresponding protein quantification. Except for 1550 sites on 765 proteins that had no corresponding protein measure, the rest of the sites mapped to 1765 proteins with abundance measures. B Intensity-based density plot comparing protein and phosphorylation abundance shows poor correlation. (PDF 1234 kb)
Sexually dimorphic microRNA miR-190 regulates lifespan in male Drosophila
Creators: name: Fernandes, Jervis
name: Varghese, Jishy
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Pharmacology
subject: Evolutionary Biology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Mental Health
subject: Computational Biology

description: microRNAs are short noncoding RNAs that buffer fluctuations in gene expression in a myriad of physiological conditions. Here, we carried out a screen to identify the role of microRNAs in the maintenance of age-dependent neuronal functions in adult Drosophila. We report that miR-190 acts in the neurons to regulate lifespan, neuronal maintanence and age-related locomotor activity specifically in male flies. miR-190, a highly conserved microRNA, shows higher expression levels in male flies. Our data suggest that miR-190 functions by regulating target genes that are involved in maintaining neuronal activity and lifespan in male flies.
Additional file 3: of Double Up Food Bucks program effects on SNAP recipients' fruit and vegetable purchases
Creators: name: Steele-Adjognon, Marie
name: Weatherspoon, Dave
Publisher: name: figshare
Year: 2017
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: During versus After DUFB Implementation Regression Results. Study Supermarket Receipt Data. Receipt data from an independent supermarket in Detroit, Michigan that participated in the DUFB program was used for this analysis. The dataset includes all store transactions from May 2014 through January 2015. (DOCX 79Â kb)
Large-time limit of the quantum Zeno effect
Creators: name: Facchi, Paolo
name: Ligabò, Marilena
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: If very frequent periodic measurements ascertain whether a quantum system is still in its initial state, its evolution is hindered. This peculiar phenomenon is called quantum Zeno effect. We investigate the large-time limit of the survival probability as the total observation time scales as a power of the measurement frequency, $t\propto N^α$. The limit survival probability exhibits a sudden jump from 1 to 0 at $α=1/2$, the threshold between the quantum Zeno effect and a diffusive behavior. Moreover, we show that for $α\geq 1$ the limit probability becomes sensitive to the spectral properties of the initial state and to arithmetic properties of the measurement periods.
description: 18 pages, 1 figure
sRNARFTarget: a fast machine-learning-based approach for transcriptome-wide sRNA target prediction
Creators: name: Naskulwar, Kratika
name: Peña-Castillo, Lourdes
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified

description: Bacterial small regulatory RNAs (sRNAs) are key regulators of gene expression in many processes related to adaptive responses. A multitude of sRNAs have been identified in many bacterial species; however, their function has yet to be elucidated. A key step to understand sRNAs function is to identify the mRNAs these sRNAs bind to. There are several computational methods for sRNA target prediction, and the most accurate one is CopraRNA which is based on comparative-genomics. However, species-specific sRNAs are quite common and CopraRNA cannot be used for these sRNAs. The most commonly used transcriptome-wide sRNA target prediction method and second-most-accurate method is IntaRNA. However, IntaRNA can take hours to run on a bacterial transcriptome. Here we present sRNARFTarget, a machine-learning-based method for transcriptome-wide sRNA target prediction applicable to any sRNA. We comparatively assessed the performance of sRNARFTarget, CopraRNA and IntaRNA in three bacterial species. Our results show that sRNARFTarget outperforms IntaRNA in terms of accuracy, ranking of true interacting pairs, and running time. However, CopraRNA substantially outperforms the other two programsin terms of accuracy. Thus, we suggest using CopraRNA when homolog sequences of the sRNA are available, and sRNARFTarget for transcriptome-wide prediction or for species-specific sRNAs. sRNARFTarget is available at https://github.com/BioinformaticsLabAtMUN/sRNARFTarget.
title: ADCO, Grènetier de Cîteaux : comptes (1497-1504) (11 H 1172), f. 00474
Creators: name: de la Côte-d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2019
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: comptes
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Grènetier de Cîteaux : comptes (1497-1504), Archives départementales de la Côte-d'Or, (11 H 1172). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Grènetier de Cîteaux : comptes (1497-1504), Archives départementales de la Côte-d'Or, (11 H 1172), f. 00474, in Projet CBMA - Corpus Burgundiae Medii Aevi \[Ressource en ligne\], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
MOESM3 of Relationship between the Northern Pacific Gyre Oscillation and tree-ring cellulose oxygen isotopes in northeastern Japan
Creators: name: Sakashita, Wataru
name: Miyahara, Hiroko
name: Yokoyama, Yusuke
name: Aze, Takahiro
name: Obrochta, Stephen
name: Nakatsuka, Takeshi
Publisher: name: figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Evolutionary Biology
subject: Sociology
subject: FOS: Sociology

description: Additional file 3: Figure S3. Wavelet coherence between the tree-ring Î´18O and (a) +JF, (b) +MA, and (c) +MJ NPGO index. Black contour indicates the 95% significant level, and white shade means the cone of influence.
Additional file 1: of A protocol for a systematic review of economic evaluation studies conducted on neonatal systemic infections in South Asia
Creators: name: Murthy, Shruti
name: John, Denny
name: Isadora Godinho
name: Godinho, Myron
name: Vasudeva Guddattu
name: N. Sreekumaran Nair
Publisher: name: figshare
Year: 2017
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: PRISMA-P 2015 Checklist. Consists of completed PRISMA-P checklist denoting the list of items included in the protocol against the PRISMA-P checklist and location of the items in the manuscript files. (DOCX 31Â kb)
Putting assessment for learning into practice in a higher education EFL context
Creators: name: White, Edmund Michael
Publisher: name: Macquarie University
Year: 2022
Subjects: Other education not elsewhere classified

description: In the past twenty years or so, assessment in education has become increasingly viewed as a means of guiding and improving student learning, rather than simply measuring it. The assessment for learning (AfL) movement, arising primarily from mainstream primary and secondary education in the UK, strongly advocates this formative, learning-centered view of assessment. At the level of classroom practice, AfL is comprised of a number of key procedures including: the use of effective feedback, self-and peer assessment, questioning and classroom dialogue, and the formative use of summative tests. Based on a series of classroom research projects, this thesis examines these AfL procedures in a higher education EFL context with adult students at Tokyo Woman’s Christian University. Providing the impetus, the theoretical framework, and serving as a crucial resource for this research, has been a book entitled, Assessment for Learning: Putting it into Practice (Black, Harrison, Lee, Marshall & Wiliam, 2003). After an introductory chapter in which AfL theory and fundamentals are presented, the three body chapters of this thesis are comprised of a series of five reports of AfL procedures being used in various classroom and teaching contexts. Chapter 1 describes a research project centered on the issue of feedback on the first draft of student essays, and begins with a teacher self-assessment of written feedback. This is followed by a report of the impact of the feedback on student essays, and how students felt about the process. Chapter 2 focuses on the student in the assessor role, and begins in Part A with a report focused on self-assessment of class participation in a freshman English class. This is followed in Part B by examining the issue of peer assessment in a public speaking course. Chapter 3 first investigates the issue of questioning in classroom dialogue, in particular, student-generated questioning. The final research project report then examines the issue of using summative assessment for formative purposes in promoting student learning. Following Chapter 3, a conclusion draws the five AfL reports together for a more holistic view of the process of putting these AfL procedures into practice in a higher education EFL context with adult learners.
Effects of boundary conditions on irreversible dynamics
Creators: name: Procacci, Aldo
name: Scoppola, Benedetto
name: Scoppola, Elisabetta
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: We present a simple one-dimensional Ising-type spin system on which we define a completely asymmetric Markovian single spin-flip dynamics. We study the system at a very low, yet non-zero, temperature and we show that for empty boundary conditions the Gibbs measure is stationary for such dynamics, while introducing in a single site a $+$ condition the stationary measure changes drastically, with macroscopical effects. We achieve this result defining an absolutely convergent series expansion of the stationary measure around the zero temperature system. Interesting combinatorial identities are involved in the proofs.
Narrating the other: cultural constructions of the European in the Australian press : a qualitative analysis of the 1920s and 1960s
Creators: name: Kretzschmar, Mandy
Publisher: name: Macquarie University
Year: 2022
Subjects: Other education not elsewhere classified

description: This thesis examines the evolution, functionality and versatility of constructions of the 'European' and to a lesser extent, of 'Europe, as an integral element of the larger vocabulary of Australian identity formation in press discourses of the 1920s and 1960s. Knowledge of the Other(s) and oneself as Australian was (and still is) generated through the processes of minority representation and categorisation. This knowledge germinated within, and was disseminated by, the Australian printed press that served as a preliminary arena within which boundaries of inclusion and exclusion to the imagined national community were drawn. Assessing the press correspondents' deployment of the 'European' and the labels' underpinning attributions, this thesis reveals that the 'European' did not fit neatly into a Manichean divide where representation is constructed through opposition. In contrast to other classifications - 'white' and 'British', in particular - the 'European' stood out as an anomalous category that offered more flexibility in that it allowed for levelling over a range of national, ethnic and cultural cleavages of those subsumed under this label. The thesis shows that it was precisely this malleability that made the 'European' a valuable means to create social cohesion. -- This thesis is essentially an investigation into how press correspondents and readers consolidated representations of the 'European' in diverse media contexts to suit contemporary political imperatives. The analysis is sectioned between two decisive periods of radical social and cultural change in Australia that are characterised by intensified nation building. The first section examines the media debates on the settlement of tropical Australia, Southern European immigration and the administration of Australia's territorial dependencies Papua and New Guinea. In each debate, the 'European' emerges as a discursive tool to alternatively describe the multi-ethnic community residing in the north, members of the expatriate community, or dissecting the term along geographical (and assumed racial) lines, as migrants from Northern or Southern Europe. The second section draws comparisons with the first by focusing on the label's deployment and attributions during Australia's transfer of power to its mandated territory of Papua New Guinea, the broadening of the national immigration policy to include European and Asian newcomers and Britain's decision to apply for entry into the European Economic Community that forced Australia to seek new economic partnerships in the Asia-Pacific region. By considering how the 'European' has been conceptualised, this thesis demonstrates the label's decisive role in creating a framework in which Australian self-understandings could be forged.
ВИСОЧНЫЕ УКРАШЕНИЯ БАЯНОВСКОГО МОГИЛЬНИКА ЛОМОВАТОВСКОЙ АРХЕОЛОГИЧЕСКОЙ КУЛЬТУРЫ
Creators: name: ПОДОСЕНОВА ЮЛИЯ АЛЕКСАНДРОВНА
name: ДАНИЧ АНДРЕЙ ВАСИЛЬЕВИЧ
Publisher: name: Археология евразийских степей
Year: 2019
Subjects: ПЕРМСКОЕ ПРЕДУРАЛЬЕ
ЭПОХА СРЕДНЕВЕКОВЬЯ
ЛОМОВАТОВСКАЯ АРХЕОЛОГИЧЕСКАЯ КУЛЬТУРА
ФИННО-УГРЫ
ВИСОЧНЫЕ УКРАШЕНИЯ
СЕРЬГИ
ТИПОЛОГИЯ
ТЕХНОЛОГИЯ ИЗГОТОВЛЕНИЯ
ХИМИЧЕСКИЙ СОСТАВ МЕТАЛЛА
PERM CIS-URALS
THE MIDDLE AGES
LOMOVATOVSKAYA ARCHAEOLOGICAL CULTURE
FINNO-UGRIANS
TEMPLE ACCESSORIES
EARRINGS
TYPOLOGY
MANUFACTURING TECHNOLOGY
METAL CHEMISTRY

description: Баяновский могильник, датируемый IX первой половиной X вв., является одним из интереснейших средневековых памятников Пермского Предуралья. В настоящий момент это наиболее изученный погребальный памятник ломоватовской археологической культуры (исследовано более 450 погребений). Публикация посвящена результатам изучения височных украшений, обнаруженных при раскопках Баяновского могильника. В публикации представлена типология украшений, основанная на форме изделий (всего 311 экземпляров, выделено 22 типа). Для каждого типа представлен широкий круг аналогий. Выявлено, что большинство изделий являются украшениями характерными для ломоватовской археологической культуры. Среди всего массива выделены немногочисленные изделия импортного, вероятнее всего, салтовского происхождения. Для каждого типа разобрана технология изготовления. При изготовлении большинства изделий применялись достаточно разнообразные ювелирные техники. Группа изделий, выполненных с помощью литья немногочисленна. С помощью рентгенофлюоресцентного анализа исследован химический состав металла изделий подавляющая часть изделий изготовлена из высокопробного серебра.
The effects of heterogeneity on stochastic cycles in epidemics
Creators: name: Herrerías-Azcué, Francisco
name: Galla, Tobias
Publisher: name: arXiv
Year: 2017
Subjects: subject: Populations and Evolution (q-bio.PE)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Biological sciences
subject: FOS: Physical sciences

description: Models of biological processes are often subject to different sources of noise. Developing an understanding of the combined effects of different types of uncertainty is an open challenge. In this paper, we study a variant of the susceptible-infective-recovered model of epidemic spread, which combines both agent-to-agent heterogeneity and intrinsic noise. We focus on epidemic cycles, driven by the stochasticity of infection and recovery events, and study in detail how heterogeneity in susceptibilities and propensities to pass on the disease affects these quasi-cycles. While the system can only be described by a large hierarchical set of equations in the transient regime, we derive a reduced closed set of equations for population-level quantities in the stationary regime. We analytically obtain the spectra of quasi-cycles in the linear-noise approximation. We find that the characteristic frequency of these cycles is typically determined by population averages of susceptibilities and infectivities, but that their amplitude depends on higher-order moments of the heterogeneity. We also investigate the synchronisation properties and phase lag between different groups of susceptible and infected individuals.
description: Main text 16 pages, 9 figures. Supplement 5 pages
Sensitive and accurate analysis of gene expression signatures enabled by oligonucleotide-labelled cDNA
Creators: name: Kapustina, Žana
name: Medžiūnė, Justina
name: Dubovskaja, Varvara
name: Matjošaitis, Karolis
name: Žeimytė, Simona
name: Lubys, Arvydas
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Biotechnology
subject: Biological Sciences not elsewhere classified
subject: Computational Biology

description: High-throughput RNA sequencing offers a comprehensive analysis of transcriptome complexity originated from regulatory events, such as differential gene expression, alternative polyadenylation and others, and allows the increase in diagnostic capacity and precision. For gene expression profiling applications that do not specifically require information on alternative splicing events, the mRNA 3′ termini counting approach is a cost-effective alternative to whole transcriptome sequencing. Here, we report MTAS-seq (mRNA sequencing via terminator-assisted synthesis) – a novel RNA-seq library preparation method directed towards mRNA 3′ termini. We demonstrate the specific enrichment for 3′-terminal regions by simple and quick single-tube protocol with built-in molecular barcoding to enable accurate estimation of transcript abundance. To achieve that, we synthesized oligonucleotide-modified dideoxynucleotides which enable the generation of cDNA libraries at the reverse transcription step. We validated the performance of MTAS-seq on well-characterized reference bulk RNA and further tested it with eukaryotic cell lysates.