cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Metal nanospheres under intense continuous wave illumination - a unique case of non-perturbative nonlinear nanophotonics
Creators: name: Gurwich, I.
name: Sivan, Y.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We show that the standard perturbative (i.e., cubic) description of the thermal nonlinear response of small metal nanospheres to intense continuous wave illumination is insufficient already beyond temperature rises of a few tens of degrees. In some cases, a cubic-quintic nonlinear response is sufficient to describe accurately the intensity dependence of the temperature, permittivity and field, while in other cases, a full non-perturbative description is required. We further analyze the relative importance of the various contributions to the thermal nonlinearity, identify a qualitative difference between Au and Ag, and show that the thermo-optical nonlinearity of the host typically plays a minor role, but its thermal conductivity is important.
Additional file 2: Figure S2. of 5-FU resistant EMT-like pancreatic cancer cells are hypersensitive to photochemical internalization of the novel endoglin-targeting immunotoxin CD105-saporin
Creators: name: Lund, Kaja
name: Olsen, Cathrine
name: Wong, Judith
name: Olsen, Petter
name: Solberg, Nina
name: Høgset, Anders
name: Krauss, Stefan
name: Selbo, Pål
Publisher: name: figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: Increased LC3B fluorescence signal in B1V following CQ treatment. Panc03.27S–Nt and Panc03.27R–B1V cells were treated with 50 μM CQ for 48 h before they were subjected to immunofluorescence detection of LC3B (red signal), nucleus stained with DAPI (Blue signal) as described in Methods. The scale bar is 10 μm. (PDF 2517 kb)
Coherent radiative decay of molecular rotations: a comparative study of terahertz-oriented versus optically aligned molecular ensembles
Creators: name: Damari, Ran
name: Kardash, Dina
name: Fleischer, Sharly
Publisher: name: arXiv
Year: 2017
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: The decay of field-free rotational dynamics is experimentally studied in two complementary methods: laser-induced molecular alignment and terahertz-field-induced molecular orientation. Comparison between the decay rates of different molecular species at various gas pressures reveals that oriented molecular ensembles decay faster than aligned ensembles. The discrepancy in decay rates is attributed to the coherent radiation emitted by the transiently oriented ensembles and is absent from aligned molecules. The experimental results reveal the dramatic contribution of coherent radiative emission to the observed decay of rotational dynamics and underline a general phenomenon expected whenever field-free coherent dipole oscillations are induced.
Hydrodynamic approach to electronic transport in graphene
Creators: name: Narozhny, B. N.
name: Gornyi, I. V.
name: Mirlin, A. D.
name: Schmalian, J.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Fluid Dynamics (physics.flu-dyn)
subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: The last few years have seen an explosion of interest in hydrodynamic effects in interacting electron systems in ultra-pure materials. In this paper we briefly review the recent advances, both theoretical and experimental, in the hydrodynamic approach to electronic transport in graphene, focusing on viscous phenomena, Coulomb drag, non-local transport measurements, and possibilities for observing nonlinear effects.
description: Topical review. 12 pages, 7 figures
Nanoscale Phase Separation in Ferroelectric Materials
Creators: name: Yukalov, V. I.
name: Yukalova, E. P.
Publisher: name: arXiv
Year: 2016
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Many materials exhibit nanoscale phase separation, when inside the host thermodynamic phase there arise nanosize embryos of another thermodynamic phase. A prominent example of this phenomenon is provided by ferroelectric materials. The theoretical description of such phase heterogeneous materials is quite challenging, since they are essentially nonuniform, the nonuniformity is random, and often they are quasiequilibrium, but not absolutely equilibrium. An approach is suggested for the theoretical description of phase separated ferroelectrics, consisting of a ferroelectric matrix with nanoscale paraelectric inclusions. The properties of the heterophase ferroelectrics are studied.
description: latex file, 8 pages, 4 figures
MOESM1 of Dipeptidyl peptidase-4 inhibitor decreases the risk of atrial fibrillation in patients with type 2 diabetes: a nationwide cohort study in Taiwan
Creators: name: Chang, Chia-Yu
name: Yung-Hsin Yeh
name: Chan, Yi-Hsin
name: Jia-Rou Liu
name: Shang-Hung Chang
name: Hsin-Fu Lee
name: Lung-Sheng Wu
name: Kun-Chi Yen
name: Chi-Tai Kuo
name: Lai-Chu See
Publisher: name: figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Table S1. International Classification of Disease (9th edition) Clinical Modification (ICD 9-CM) codes used to define the co-morbidities and clinical outcome in the study cohort.
title: A case of a cardiac angiosarcoma
Creators: name: Sneyers, Vincent
Publisher: name: EURORAD
Year: 2024
Subjects: subject: Cardiovascular
subject: Cardiac
subject: Cardiovascular system
subject: CT
subject: MR
subject: Ultrasound
subject: Cancer
subject: Clinical Case

description: Clinical History: A 33-year-old male without significant medical history. The patient presented to the emergency department with dyspnoea, night sweats and abdominal discomfort. Laboratory investigations revealed mildly elevated troponin levels, elevated inflammatory markers and discrete anaemia.

description: 33 years, male
Newtonian Potential and Geodesic Completeness in Infinite Derivative Gravity
Creators: name: Conroy, Aindriú
name: Edholm, James
Publisher: name: arXiv
Year: 2017
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Recent study has shown that a non-singular oscillating potential, a feature of Infinite Derivative Gravity (IDG) theories, matches current experimental data better than the standard GR potential. In this work we show that this non-singular oscillating potential can be given by a wider class of theories which allows the defocusing of null rays, and therefore geodesic completeness. We consolidate the conditions whereby null geodesic congruences may be made past-complete, via the Raychaudhuri Equation, with the requirement of a non-singular Newtonian potential in an IDG theory. In so doing, we examine a class of Newtonian potentials characterised by an additional degree of freedom in the scalar propagator, which returns the familiar potential of General Relativity at large distances.
description: 7 pages, 3 figures
Additional file 1: of The impact of interpretive and reductive front-of-pack labels on food choice and willingness to pay
Creators: name: Talati, Zenobia
name: Norman, Richard
name: Pettigrew, Simone
name: Neal, Bruce
name: Kelly, Bridget
name: Dixon, Helen
name: Ball, Kylie
name: Miller, Caroline
name: Shilton, Trevor
Publisher: name: figshare
Year: 2017
Subjects: subject: Medicine
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 60506 Virology

description: Willingness to pay by demographic characteristics. (DOCX 55Â kb)
Additional file 1: of Systems healthcare: a holistic paradigm for tomorrow
Creators: name: Fiandaca, Massimo
name: Mapstone, Mark
name: Connors, Elenora
name: Jacobson, Mireille
name: Monuki, Edwin
name: Malik, Shaista
name: Macciardi, Fabio
name: Federoff, Howard
Publisher: name: figshare
Year: 2017
Subjects: subject: Space Science
subject: Neuroscience
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Computational Biology

description: Systems Healthcare: A holistic paradigm for tomorrow. (DOCX 214 kb)
Hydrogen Balmer Line Broadening in Solar and Stellar Flares
Creators: name: Kowalski, Adam F.
name: Allred, Joel C.
name: Uitenbroek, Han
name: Tremblay, Pier-Emmanuel
name: Brown, Stephen
name: Carlsson, Mats
name: Osten, Rachel A.
name: Wisniewski, John P.
name: Hawley, Suzanne L.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: The broadening of the hydrogen lines during flares is thought to result from increased charge (electron, proton) density in the flare chromosphere. However, disagreements between theory and modeling prescriptions have precluded an accurate diagnostic of the degree of ionization and compression resulting from flare heating in the chromosphere. To resolve this issue, we have incorporated the unified theory of electric pressure broadening of the hydrogen lines into the non-LTE radiative transfer code RH. This broadening prescription produces a much more realistic spectrum of the quiescent, A0 star Vega compared to the analytic approximations used as a damping parameter in the Voigt profiles. We test recent radiative-hydrodynamic (RHD) simulations of the atmospheric response to high nonthermal electron beam fluxes with the new broadening prescription and find that the Balmer lines are over-broadened at the densest times in the simulations. Adding many simultaneously heated and cooling model loops as a "multithread" model improves the agreement with the observations. We revisit the three-component phenomenological flare model of the YZ CMi Megaflare using recent and new RHD models. The evolution of the broadening, line flux ratios, and continuum flux ratios are well-reproduced by a multithread model with high-flux nonthermal electron beam heating, an extended decay phase model, and a "hot spot" atmosphere heated by an ultrarelativistic electron beam with reasonable filling factors: 0.1%, 1%, and 0.1% of the visible stellar hemisphere, respectively. The new modeling motivates future work to understand the origin of the extended gradual phase emission.
description: 31 pages, 13 figures, 2 tables, accepted for publication in the Astrophysical Journal
Coherent control with a short-wavelength Free Electron Laser
Creators: name: Prince, K. C.
name: Allaria, E.
name: Callegari, C.
name: Cucini, R.
name: De Ninno, G.
name: Di Mitri, S.
name: Diviacco, B.
name: Ferrari, E.
name: Finetti, P.
name: Gauthier, D.
name: Giannessi, L.
name: Mahne, N.
name: Penco, G.
name: Plekan, O.
name: Raimondi, L.
name: Rebernik, P.
name: Roussel, E.
name: Svetina, C.
name: Trovò, M.
name: Zangrando, M.
name: Negro, M.
name: Carpeggiani, P.
name: Reduzzi, M.
name: Sansone, G.
name: Grum-Grzhimailo, A. N.
name: Gryzlova, E. V.
name: Strakhova, S. I.
name: Bartschat, K.
name: Douguet, N.
name: Venzke, J.
name: Iablonskyi, D.
name: Kumagai, Y.
name: Takanashi, T.
name: Ueda, K.
name: Fischer, A.
name: Coreno, M.
name: Stienkemeier, F.
name: Ovcharenko, Y.
name: Mazza, T.
name: Meyer, M.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: XUV and X-ray Free Electron Lasers (FELs) produce short wavelength pulses with high intensity, ultrashort duration, well-defined polarization and transverse coherence, and have been utilised for many experiments previously possible at long wavelengths only: multiphoton ionization, pumping an atomic laser, and four-wave mixing spectroscopy. However one important optical technique, coherent control, has not yet been demonstrated, because Self- Amplified Spontaneous Emission FELs have limited longitudinal coherence. Single-colour pulses from the FERMI seeded FEL are longitudinally coherent, and two-colour emission is predicted to be coherent. Here we demonstrate the phase correlation of two colours, and manipulate it to control an experiment. Light of wavelengths 63.0 and 31.5 nm ionized neon, and the asymmetry of the photoelectron angular distribution was controlled by adjusting the phase, with temporal resolution 3 attoseconds. This opens the door to new shortwavelength coherent control experiments with ultrahigh time resolution and chemical sensitivity.
Additional file 1 of Beta-blockeRs tO patieNts with CHronIc Obstructive puLmonary diseasE (BRONCHIOLE) – Study protocol from a randomized controlled trial
Creators: name: Sundh, Josefin
name: Magnuson, Anders
name: Montgomery, Scott
name: Andell, Pontus
name: Rindler, Gustaf
name: Fröbert, Ole
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer

description: Additional file 1. Participating centers.
Additional file 1: Figure S1. of 5-FU resistant EMT-like pancreatic cancer cells are hypersensitive to photochemical internalization of the novel endoglin-targeting immunotoxin CD105-saporin
Creators: name: Lund, Kaja
name: Olsen, Cathrine
name: Wong, Judith
name: Olsen, Petter
name: Solberg, Nina
name: HĂ¸Gset, Anders
name: Krauss, Stefan
name: PĂĽl Selbo
Publisher: name: figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: 60506 Virology

description: RNA expression levels in Nt and B1V from previously published microarray data, presented as fold change, where Nt is set to 1. RNA expression levels of A) SOD1 and SOD2, B) LAMP1 C) MAP1LC3A and MAP1LC3B and D) CD105. (PDF 293Â kb)
Some Ostrowski type inequalities for double integrals On Time Scales
Creators: name: Pachpatte, Deepak B.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Classical Analysis and ODEs (math.CA)
subject: FOS: Mathematics

description: The main objective of this paper is to study some Ostrowski and Trapezoid type inequalities for double integrals on Time Scales. Some other interesting inequalities are also given.
Special matchings in Coxeter groups
Creators: name: Caselli, Fabrizio
name: Marietti, Mario
Publisher: name: arXiv
Year: 2016
Subjects: subject: Combinatorics (math.CO)
subject: FOS: Mathematics

description: Special matchings are purely combinatorial objects associated with a partially ordered set, which have applications in Coxeter group theory. We provide an explicit characterization and a complete classification of all special matchings of any lower Bruhat interval. The results hold in any arbitrary Coxeter group and have also applications in the study of the corresponding parabolic Kazhdan--Lusztig polynomials.
description: 19 pages
MOESM2 of Exploring diet, exercise, chronic illnesses, occupational stressors and mental well-being of healthcare professionals in Punjab, Pakistan
Creators: name: Waqas Ahmad
name: Waqas, Ahmed
name: Saleem, Haider
name: Sadiq Naveed
Publisher: name: figshare
Year: 2017
Subjects: subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 2. Questionnaire used for interviewing participants. This document contains the questionnaire employed in present study.
title: 03_0450
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
Additional file 12 of MetaDecoder: a novel method for clustering metagenomic contigs
Creators: name: Liu, Cong-Cong
name: Dong, Shan-Shan
name: Chen, Jia-Bin
name: Wang, Chen
name: Ning, Pan
name: Guo, Yan
name: Yang, Tie-Lin
Publisher: name: figshare
Year: 2022
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Artificial Intelligence and Image Processing
subject: FOS: Computer and information sciences

description: Additional file 12: Supplementary Figure S12. Euclidean distance distributions between contigs abstracted from the same genome (intra-genome) and from two different genomes (inter-genome). The 3,023 bacterial genomes downloaded from NCBI were randomly fragmented into contigs (1 Kb - 100 Kb), then one million simulations were performed. Two histograms denote the intra- and interdistances, respectively. Two curves represent Gaussian densities parametrized by the mean and variance of the intra- and inter- distances, respectively.
Titanium dioxide hole-blocking layer in ultra-thin-film crystalline silicon solar cells
Creators: name: Kang, Yangsen
name: Deng, Huiyang
name: Chen, Yusi
name: Huo, Yijie
name: Jia, Jieyang
name: Zhao, Li
name: Zaidi, Zain
name: Zang, Kai
name: Harris, James S.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Applied Physics (physics.app-ph)
subject: FOS: Physical sciences

description: One of the remaining obstacles to approaching the theoretical efficiency limit of crystalline silicon (c-Si) solar cells is the exceedingly high interface recombination loss for minority carriers at the Ohmic contacts. In ultra-thin-film c-Si solar cells, this contact recombination loss is far more severe than for traditional thick cells due to the smaller volume and higher minority carrier concentration of the former. This paper presents a novel design of an electron passing (Ohmic) contact to n-type Si that is hole-blocking with significantly reduced hole recombination. This contact is formed by depositing a thin titanium dioxide (TiO2) layer to form a silicon metal-insulator-semiconductor (MIS) contact. A 2 μm thick Si cell with this TiO2 MIS contact achieved an open circuit voltage (Voc) of 645 mV, which is 10 mV higher than that of an ultra-thin cell with a metal contact. This MIS contact demonstrates a new path for ultra-thin-film c-Si solar cells to achieve high efficiencies as high as traditional thick cells, and enables the fabrication of high-efficiency c-Si solar cells at a lower cost.
ALMA mapping of rapid gas and dust variations in comet C/2012 S1 (ISON): new insights into the origin of cometary HNC
Creators: name: Cordiner, M. A.
name: Boissier, J.
name: Charnley, S. B.
name: Remijan, A. J.
name: Mumma, M. J.
name: Villanueva, G.
name: Lis, D. C.
name: Milam, S. N.
name: Paganini, L.
name: Crovisier, J.
name: Bockelee-Morvan, D.
name: Kuan, Y. -J.
name: Biver, N.
name: Coulson, I. M.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: Observations of the sungrazing comet C/2012 S1 (ISON) were carried out using the Atacama Large Millimeter/submillimeter Array (ALMA) at a heliocentric distance of 0.58-0.54 AU (pre-perihelion) on 2013 November 16-17. Temporally resolved measurements of the coma distributions of HNC, CH$_3$OH, H$_2$CO and dust were obtained over the course of about an hour on each day. During the period UT 10:10-11:00 on Nov. 16, the comet displayed a remarkable drop in activity, manifested as a $>42$% decline in the molecular line and continuum fluxes. The H$_2$CO observations are consistent with an abrupt, $\approx50$% reduction in the cometary gas production rate soon after the start of our observations. On Nov. 17, the total observed fluxes remained relatively constant during a similar period, but strong variations in the morphology of the HNC distribution were detected as a function of time, indicative of a clumpy, intermittent outflow for this species. Our observations suggest that at least part of the detected HNC originated from degradation of nitrogen-rich organic refractory material, released intermittently from confined regions of the nucleus. By contrast, the distributions of CH$_3$OH and H$_2$CO during the Nov. 17 observations were relatively uniform, consistent with isotropic outflow and stable activity levels for these species. These results highlight a large degree of variability in the production of gas and dust from comet ISON during its pre-perihelion outburst, consistent with repeated disruption of the nucleus interspersed with periods of relative quiescence.
description: 9 pages. Accepted for publication in ApJ, February 2017
The $Λ$-parameter in 3-flavour QCD and $α_s(m_Z)$ by the ALPHA collaboration
Creators: name: Bruno, M.
name: Brida, M. Dalla
name: Fritzsch, P.
name: Korzec, T.
name: Ramos, A.
name: Schaefer, S.
name: Simma, H.
name: Sint, S.
name: Sommer, R.
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We present results by the ALPHA collaboration for the $Λ$-parameter in 3-flavour QCD and the strong coupling constant at the electroweak scale, $α_s(m_Z)$, in terms of hadronic quantities computed on the CLS gauge configurations. The first part of this proceedings contribution contains a review of published material \cite{Brida:2016flw,DallaBrida:2016kgh} and yields the $Λ$-parameter in units of a low energy scale, $1/L_{\rm had}$. We then discuss how to determine this scale in physical units from experimental data for the pion and kaon decay constants. We obtain $Λ_{\overline{\rm MS}}^{(3)} = 332(14)$ MeV which translates to $α_s(M_Z)=0.1179(10)(2)$ using perturbation theory to match between 3-, 4- and 5-flavour QCD.
description: 21 pages. Collects contributions of A. Ramos, S. Sint and R. Sommer to the 34th annual International Symposium on Lattice Field Theory; LaTeX input encoding problem fixed
Additional file 10 of MetaDecoder: a novel method for clustering metagenomic contigs
Creators: name: Liu, Cong-Cong
name: Dong, Shan-Shan
name: Chen, Jia-Bin
name: Wang, Chen
name: Ning, Pan
name: Guo, Yan
name: Yang, Tie-Lin
Publisher: name: figshare
Year: 2022
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Artificial Intelligence and Image Processing
subject: FOS: Computer and information sciences

description: Additional file 10: Supplementary Figure S10. Phylogenetic analysis of 3,651 clusters with contamination ≤ 0.10 and completeness ≥ 0.50. Taxonomic labels were assigned by GTDB (version 95) using GTDB-TK (version 1.3.0) with default parameters. FastTree (version 2.1.11) with default parameters was used to construct the tree based on the concatenated marker gene amino acid alignments created by CheckM (version 1.0.13). The tree was visualized in iTOL. Only the bacterial phyla were shown.
Additional file 8: of Comparative transcriptome analysis of Glyphodes pyloalis Walker (Lepidoptera: Pyralidae) reveals novel insights into heat stress tolerance in insects
Creators: name: Yuncai Liu
name: Su, Hang
name: Rongqiao Li
name: Xiaotong Li
name: Yusong Xu
name: Xiangping Dai
name: Yanyan Zhou
name: Huabing Wang
Publisher: name: figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology

description: Primers used for G. pyloalis. (DOCX 19Â kb)
Additional file 11 of MetaDecoder: a novel method for clustering metagenomic contigs
Creators: name: Liu, Cong-Cong
name: Dong, Shan-Shan
name: Chen, Jia-Bin
name: Wang, Chen
name: Ning, Pan
name: Guo, Yan
name: Yang, Tie-Lin
Publisher: name: figshare
Year: 2022
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Artificial Intelligence and Image Processing
subject: FOS: Computer and information sciences

description: Additional file 11: Supplementary Figure S11. Clustering benchmarks of MetaDecoder under different contig length thresholds. MetaDecoder with default length threshold (2.5 Kb) and 1 Kb (MetaDecoder1000) were applied on all real-world samples (i.e., two samples from high-CO2 cold-water geyser, 24 HMP samples and 145 samples from a cohort of T2D study), respectively. Cluster number (completeness ≥ 0.90) of each sample was shown at two contamination levels. Significance was determined using the Wilcoxon matched-pairs signed rank test.
Test beam studies of the TRD prototype filled with different gas mixtures based on Xe, Kr, and Ar
Creators: name: Celebi, E
name: Brooks, T.
name: Joos, M.
name: Rembser, C.
name: Gurbuz, S
name: Cetin, S. A.
name: Konovalov, S. P.
name: Tikhomirov, V. O.
name: Zhukov, K.
name: Fillipov, K. A.
name: Romaniouk, A.
name: Smirnov, S.
name: Teterin, P. E.
name: Vorobev, K. A.
name: Boldyrev, A. S.
name: Maevsky, A.
name: Derendarz, D.
Publisher: name: arXiv
Year: 2016
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: Towards the end of LHC Run1, gas leaks were observed in some parts of the Transition Radiation Tracker (TRT) of ATLAS. Due to these leaks, primary Xenon based gas mixture was replaced with Argon based mixture in various parts. Test-beam studies with a dedicated Transition Radiation Detector (TRD) prototype were carried out in 2015 in order to understand transition radiation performance with mixtures based on Argon and Krypton. We present and discuss the results of these test-beam studies with different active gas compositions.
description: 5 pages,12 figures, The 2nd International Conference on Particle Physics and Astrophysics (ICPPA-2016); Acknowledgments section corrected
Carnet nº 25, commencé à Saïgon (p. 29)
Creators: name: Péraire, Lucien
name: CNRS
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2023

description: created: 9-1-1932
Discovery of 16 New z ~ 5.5 Quasars : Filling in the Redshift Gap of Quasar Color Selection
Creators: name: Yang, Jinyi
name: Fan, Xiaohui
name: Wu, Xue-Bing
name: Wang, Feige
name: Bian, Fuyan
name: Yang, Qian
name: McGreer, Ian D.
name: Yi, Weimin
name: Jiang, Linhua
name: Green, Richard
name: Yue, Minghao
name: Wang, Shu
name: Li, Zefeng
name: Ding, Jiani
name: Dye, Simon
name: Lawrence, Andy
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We present initial results from the first systematic survey of luminous $z\sim 5.5$ quasars. Quasars at $z \sim$ 5.5, the post-reionization epoch, are crucial tools to explore the evolution of intergalactic medium, quasar evolution and the early super-massive black hole growth. However, it has been very challenging to select quasars at redshifts 5.3 $\le z \le$ 5.7 using conventional color selections, due to their similar optical colors to late-type stars, especially M dwarfs, resulting in a glaring redshift gap in quasar redshift distributions. We develop a new selection technique for $z \sim$ 5.5 quasars based on optical, near-IR and mid-IR photometric data from Sloan Digital Sky Survey (SDSS), UKIRT InfraRed Deep Sky Surveys - Large Area Survey (ULAS), VISTA Hemisphere Survey (VHS) and Wide field Infrared Survey Explorer (WISE). From our pilot observations in SDSS-ULAS/VHS area, we have discovered 15 new quasars at 5.3 $\le z \le$ 5.7 and 6 new lower redshift quasars, with SDSS z band magnitude brighter than 20.5. Including other two $z \sim$ 5.5 quasars already published in our previous work, we now construct an uniform quasar sample at 5.3 $\le z \le$ 5.7 with 17 quasars in a $\sim$ 4800 square degree survey area. For further application in a larger survey area, we apply our selection pipeline to do a test selection by using the new wide field J band photometric data from a preliminary version of the UKIRT Hemisphere Survey (UHS). We successfully discover the first UHS selected $z \sim$ 5.5 quasar.
description: 10 pages, 5 figures, accepted by AJ
Additional file 5: Table S3. of Production and molecular characterization of bread wheat lines with reduced amount of α-type gliadins
Creators: name: Camerlengo, Francesco
name: Sestili, Francesco
name: Silvestri, Marco
name: Colaprico, Giuseppe
name: Margiotta, Benedetta
name: Ruggeri, Roberto
name: Lupi, Roberta
name: Masci, Stefania
name: Lafiandra, Domenico
Publisher: name: figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Presence or absence of five immunogenic epitopes (Glia-α: QGSFQPSQQ; Glia-α2: PQPQLPYPQPQLPY; Glia-α9: PFPQPQLPY; Glia-α20: PFRPQQPYPQ; 33-mer: LQLQPFPQPQLPYPQPQLPYPQPQLPYPQPQPF) in the 49 deduced amino acidic sequences isolated from the bread wheat cv Pegaso. (DOCX 15 kb)
The Dependence of the Mass-Metallicity Relation on Large Scale Environment
Creators: name: Wu, Po-Feng
name: Zahid, H. Jabran
name: Hwang, Ho Seong
name: Geller, Margaret J.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We examine the relation between gas-phase oxygen abundance and stellar mass---the MZ relation---as a function of the large scale galaxy environment parameterized by the local density. The dependence of the MZ relation on the environment is small. The metallicity where the MZ relation saturates and the slope of the MZ relation are both independent of the local density. The impact of the large scale environment is completely parameterized by the anti-correlation between local density and the turnover stellar mass where the MZ relation begins to saturate. Analytical modeling suggests that the anti-correlation between the local density and turnover stellar mass is a consequence of a variation in the gas content of star-forming galaxies. Across $\sim1$ order of magnitude in local density, the gas content at a fixed stellar mass varies by $\sim5\%$. Variation of the specific star formation rate with environment is consistent with this interpretation. At a fixed stellar mass, galaxies in low density environments have lower metallicities because they are slightly more gas-rich than galaxies in high density environments. Modeling the shape of the mass-metallicity relation thus provides an indirect means to probe subtle variations in the gas content of star-forming galaxies.
description: 14 pages, 11 figures. Submitted to MNRAS, referee's comment incorporated
Stellar Disc Truncations and Extended Haloes in Face-on Spiral Galaxies
Creators: name: Peters, S. P. C.
name: van der Kruit, P. C.
name: Knapen, J. H.
name: Trujillo, I.
name: Fliri, J.
name: Cisternas, M.
name: Kelvin, L. S.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We use data from the IAC Stripe82 Legacy Project to study the surface photometry of 22 nearby, face-on to moderately inclined spiral galaxies. The reprocessed and combined Stripe 82 $g'$, $r'$ and $i'$ images allow us to probe the galaxy down to 29-30 $r'$-magnitudes/arcsec$^2$ and thus reach into the very faint outskirts of the galaxies. Truncations are found in three galaxies. An additional 15 galaxies are found to have an apparent extended stellar halo. Simulations show that the scattering of light from the inner galaxy by the Point Spread Function (PSF) can produce faint structures resembling haloes, but this effect is insufficient to fully explain the observed haloes. The presence of these haloes and of truncations is mutually exclusive, and we argue that the presence of a stellar halo and/or light scattered by the PSF can hide truncations. Furthermore, we find that the onset of the stellar halo and the truncations scales tightly with galaxy size. Interestingly, the fraction of light does not correlate with dynamic mass. Nineteen galaxies are found to have breaks in their profiles, the radius of which also correlates with galaxy size.
description: Accepted for publication by Monthly Notices of the Royal Astronomical Society. High-res versions of the paper and the online appendix are available at http://www.astro.rug.nl/~vdkruit/jea3/homepage/Petersetal-VII.pdf and ...PaperVII-online.pdf
An epicycle method for elasticity limit calculations
Creators: name: van de Walle, Axel
name: Kadkhodaei, Sara
name: Sun, Ruoshi
name: Hong, Qi-Jun
Publisher: name: arXiv
Year: 2017
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The task of finding the smallest energy needed to bring a solid to its onset of mechanical instability arises in many problems in materials science, from the determination of the elasticity limit to the consistent assignment of free energies to mechanically unstable phases. However, unless the space of possible deformations is low-dimensional and a priori known, this problem is numerically difficult, as it involves minimizing a function under a constraint on its Hessian, which is computionally prohibitive to obtain in low symmetry systems, especially if electronic structure calculations are used. We propose a method that is inspired by the well-known dimer method for saddle point searches but that adds the necessary ingredients to solve for the lowest onset of mechanical instability. The method consists of two nested optimization problems. The inner one involves a dimer-like construction to find the direction of smallest curvature as well as the gradient of this curvature function. The outer optimization then minimizes energy using the result of the inner optimization problem to constrain the search to the hypersurface enclosing all points of zero minimum curvature. Example applications to both model systems and electronic structure calculations are given.
description: 10 pages, 10 figures
MOESM1 of Exploring diet, exercise, chronic illnesses, occupational stressors and mental well-being of healthcare professionals in Punjab, Pakistan
Creators: name: Waqas Ahmad
name: Waqas, Ahmed
name: Saleem, Haider
name: Sadiq Naveed
Publisher: name: figshare
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: Marine Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1. Detailed description of methodology. This file describes detailed methodology employed in the collection of data for â Exploring diet, exercise, chronic illnesses, occupational stressors and mental well-being of healthcare professionals in Punjab, Pakistanâ .
Gauge dependence of gravitational waves generated from scalar perturbations
Creators: name: Hwang, Jai-chan
name: Jeong, Donghui
name: Noh, Hyerim
Publisher: name: arXiv
Year: 2017
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: A tensor-type cosmological perturbation, defined as a transverse and traceless spatial fluctuation, is often interpreted as the gravitational waves. While decoupled from the scalar-type perturbations in linear order, the tensor perturbations can be sourced from the scalar-type in the nonlinear order. The tensor perturbations generated by the quadratic combination of linear scalar-type cosmological perturbation are widely studied in the literature, but all previous studies are based on zero-shear gauge without proper justification. Here, we show that, being second order in perturbation, such an induced tensor perturbation is generically gauge dependent. In particular, the gravitational wave power spectrum depends on the hypersurface (temporal gauge) condition taken for the linear scalar perturbation. We further show that, during the matter-dominated era, the induced tensor modes dominate over the linearly evolved primordial gravitational waves amplitude for $k\gtrsim10^{-2}~[h/{\rm Mpc}]$ even for the gauge that gives lowest induced tensor modes with the optimistic choice of primordial gravitational waves ($r=0.1$). The induced tensor modes, therefore, must be modeled correctly specific to the observational strategy for the measurement of primordial gravitational waves from large-scale structure via, for example, parity-odd mode of weak gravitational lensing, or clustering fossils.
description: 13 pages, 1 figure (4 files), submitted to ApJ
Auxiliary-Field Monte Carlo for lattice bosons: tackling strong interactions and frustration
Creators: name: Malpetti, Daniele
name: Roscilde, Tommaso
Publisher: name: arXiv
Year: 2016
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Quantum Gases (cond-mat.quant-gas)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We introduce a new numerical technique -- bosonic auxiliary-field Monte Carlo (bAFMC) -- which allows to calculate the thermal properties of large lattice-boson systems within a systematically improvable semiclassical approach, and which is virtually applicable to any bosonic model. Our method amounts to a decomposition of the lattice into clusters, and to an Ansatz for the density matrix of the system in the form of a cluster-separable state -- with non-entangled, yet classically correlated clusters. This approximation eliminates any sign problem, and can be systematically improved upon by using clusters of growing size. Extrapolation in the cluster size allows to reproduce numerically exact results for the superfluid transition of hardcore bosons on the square lattice, and to provide a solid quantitative prediction for the superfluid and chiral transition of hardcore bosons on the frustrated triangular lattice.
description: 4+6 pages; 2+5 figures
The Proposal Auto-Categorizer and Manager for Time Allocation Review at Space Telescope Science Institute
Creators: name: Strolger, Louis-Gregory
name: Porter, Sophia
name: Lagerstrom, Jill
name: Weissman, Sarah
name: Reid, I. Neill
name: Garcia, Michael
Publisher: name: arXiv
Year: 2017
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: The Proposal Auto-Categorizer and Manager (PACMan) tool was written to respond to concerns on subjective flaws and potential biases in some aspects of the proposal review process for time allocation for the {\it Hubble Space Telescope} (HST), and to partially alleviate some of the anticipated additional workload from the {\it James Webb Space Telescope} (JWST) proposal review. PACMan is essentially a mixed-method Naive Bayesian spam filtering routine, with multiple pools representing scientific categories, that utilizes the Robinson method for combining token (or word) probabilities. PACMan was trained to make similar programmatic decisions in science category sorting, panelist selection, and proposal-to-panelists assignments to those made by individuals and committees in the Science Policies Group (SPG) at Space Telescope Science Institute. Based on training from the previous cycle's proposals, PACMan made the same science category assignments for proposals in Cycle 24 as did the SPG, an average of 87\% of the time. Tests for similar science categorizations, based on training using proposals from additional cycles, show that this accuracy can be further improved, to the $>95\%$ level. This tool will be used to augment or replace key functions in the TAC review processes in future HST and JWST cycles.
description: 9 pages, 7 figures
title: What has been putting upward pressure on CORRA?
Creators: name: Plong, Boran
name: Maru, Neil
Publisher: name: Bank of Canada
publisherIdentifier: https://ror.org/05cc98565
publisherIdentifierScheme: ROR
Year: 2024

description: From the autumn of 2023 into early 2024, the Canadian Overnight Repo Rate Average (CORRA), a measure of the cost of overnight general collateral Canadian dollar repos, was consistently well above the Bank’s target for the overnight rate. We find that, among several factors, long bond positions that require repo financing are the main driver of the recent upward pressure on CORRA.
description: De l’automne 2023 jusqu’au début de 2024, le taux CORRA – qui sert de mesure du coût du financement à un jour en dollars canadiens sur le marché général des pensions – a sans cesse dépassé de loin le taux cible du financement à un jour de la Banque du Canada. Nous constatons que les positions acheteur sur obligations financées sur le marché des pensions étaient le principal vecteur de pressions à la hausse en cause, parmi plusieurs autres facteurs.
Additional file 2: of Two-dimensional digital photography for child body posture evaluation: standardized technique, reliable parameters and normative data for age 7-10 years
Creators: name: L. Stolinski
name: M. Kozinoga
name: D. Czaprowski
name: M. Tyrakowski
name: P. Cerny
name: N. Suzuki
name: T. Kotwicki
Publisher: name: figshare
Year: 2017
Subjects: subject: Medicine
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology

description: Appendix 2. Normative values of sagittal photographic parameters for children aged 7â 10 based on the tables and percentile charts for sex and age. (PDF 1000 kb)
Deposition of defected graphene on (001) Si substrates by thermal decomposition of acetone
Creators: name: Milenov, T. I.
name: Avramova, I.
name: Valcheva, E.
name: Avdeev, G. V.
name: Rusev, S.
name: Kolev, S.
name: Balchev, I.
name: Petrov, I.
name: Pishinkov, D.
name: Popov, V. N.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We present results on the deposition and characterization of defected graphene by the chemical vapor deposition (CVD) method. The source of carbon/carbon-containing radicals is thermally decomposed acetone (C2H6CO) in Ar main gas flow. The deposition takes place on (001) Si substrates at about 1150-11600C. We established by Raman spectroscopy the presence of single- to few- layered defected graphene deposited on two types of interlayers that possess different surface morphology and consisted of mixed sp2 and sp3 hybridized carbon. The study of interlayers by XPS, XRD, GIXRD and SEM identifies different phase composition: i) a diamond-like carbon dominated film consisting some residual SiC, SiO2 etc.; ii) a sp2- dominated film consisting small quantities of C60/C70 fullerenes and residual Si-O-, C=O etc. species. The polarized Raman studies confirm the presence of many single-layered defected graphene areas that are larger than few microns in size on the predominantly amorphous carbon interlayers.
Additional file 1 of MetaDecoder: a novel method for clustering metagenomic contigs
Creators: name: Liu, Cong-Cong
name: Dong, Shan-Shan
name: Chen, Jia-Bin
name: Wang, Chen
name: Ning, Pan
name: Guo, Yan
name: Yang, Tie-Lin
Publisher: name: figshare
Year: 2022
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Artificial Intelligence and Image Processing
subject: FOS: Computer and information sciences

description: Additional file 1: Supplementary Figure S1. Clustering performance of the k-mer frequency probabilistic model. (A) PCA of 16,199 fragmented contigs with transparency representing the length and color indicating the genome. (B) Clustering performance of the multi-class SVM on all 16,199 contigs. The classifier was trained 100 times with a random region of 50 Kb in length of each genome. Among the 1,619,900 predictions, 92.85% (1,504,091) were accurate. The mean and standard deviation of the clustering probabilities were 0.86±0.17 (correct predictions) and 0.40±0.21 (incorrect predictions), respectively. Genome identifiers were provided in Supplemental Table S1. (C) Comparison of clustering probabilities between correct and incorrect predictions. Misclassified predictions have a higher average Shannon entropy (2.35) than the correct predictions (0.71).
Partition musicale : la polichinelle (1er violon) et la sabotière 1er violon)
Creators: name: Lancelot, Francine
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020

description: Source: http://www.calames.abes.fr/pub/ms/FileId-3413
description: created: ca 1970
Additional file 7: of Comparative transcriptome analysis of Glyphodes pyloalis Walker (Lepidoptera: Pyralidae) reveals novel insights into heat stress tolerance in insects
Creators: name: Yuncai Liu
name: Su, Hang
name: Rongqiao Li
name: Xiaotong Li
name: Yusong Xu
name: Xiangping Dai
name: Yanyan Zhou
name: Huabing Wang
Publisher: name: figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology

description: Primers used for B. mori CYPs. (DOCX 15Â kb)