cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
sj-pdf-4-bbi-10.1177_11779322211027406 – Supplemental material for Comparison of Hyaluronic Acid Biosynthetic Genes From Different Strains of Pasteurella multocida
Creators: name: Pasomboon, Pailin
name: Chumnanpuen, Pramote
name: E-kobon, Teerasak
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Supplemental material, sj-pdf-4-bbi-10.1177_11779322211027406 for Comparison of Hyaluronic Acid Biosynthetic Genes From Different Strains of Pasteurella multocida by Pailin Pasomboon, Pramote Chumnanpuen and Teerasak E-kobon in Bioinformatics and Biology Insights
Newbits - Case Study Taxonomy
Creators: name: Baruwa, Olatunde
name: Leal, Xavier
Publisher: name: Zenodo
Year: 2017
Subjects: ITS, C-ITS, Cooperative Intelligent Transport System, taxonomy, business modeling

description: This project deliverable provides a taxonomic framework to support the definition and validation of case studies in the Intelligent Transport Systems (ITS) sector ensuring adequate support for a market research analysis, the development and validation of business models, as well as a stakeholders’ analysis. The approach is applied to four pre-selected ITS case studies.

First, the report describes the factors for preselecting the case studies in representativeness and variety, status, scalability and transferability, network of stakeholders, and market opportunities. Second, the report outlines the validation process determining whether selected case studies are representative of the variety in types of the ITS market segments and services, barriers/enablers and KPIs for the implementation of ITS services.
Supplemental Material, sj-pdf-1-ojs-10.1177_23259671211021059 - APKASS Consensus Statement on Chronic Syndesmosis Injury, Part 3: Fusion Techniques, Comorbidity Treatments, Postoperative Rehabilitation, and Return-to-Sport Indications
Creators: name: Song, Yujie
name: Shi, Zhongmin
name: Kurokawa, Hiroaki
name: Tanaka, Yasuhito
name: Ling, Samuel K.K.
name: Yung, Patrick
name: Angthong, Chayanin
name: Han, Seung Hwan
name: Hua, Yinghui
name: Li, Hongyun
name: Jiao, Chen
name: Gui, Jianchao
name: Li, Qi
Publisher: name: SAGE Journals
Year: 2021
Subjects: Orthopaedics
Sports Medicine

description: Supplemental Material, sj-pdf-1-ojs-10.1177_23259671211021059 for APKASS Consensus Statement on Chronic Syndesmosis Injury, Part 3: Fusion Techniques, Comorbidity Treatments, Postoperative Rehabilitation, and Return-to-Sport Indications by Yujie Song, Zhongmin Shi, Hiroaki Kurokawa, Yasuhito Tanaka, Samuel K.K. Ling, Patrick Yung, Chayanin Angthong, Seung Hwan Han, Yinghui Hua, Hongyun Li, Chen Jiao, Jianchao Gui, Qi Li and on behalf of the APKASS Foot and Ankle Committee in Orthopaedic Journal of Sports Medicine
Additional file 2 of Cellular and clinical impact of protein phosphatase enzyme epigenetic silencing in multiple cancer tissues
Creators: name: Wiltshire, Edward
name: de Moura, Manuel Castro
name: Piñeyro, David
name: Joshi, Ricky S.
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Supplementary Material 2: Supplementary data S1–S9
sj-docx-1-hol-10.1177_09596836211025971 – Supplemental material for A modelling approach to the investigation of the effects of the Minoan supervolcanic eruption on Aegian sand fly diversity
Creators: name: Trájer, Attila J
Publisher: name: SAGE Journals
Year: 2021
Subjects: Geography
History

description: Supplemental material, sj-docx-1-hol-10.1177_09596836211025971 for A modelling approach to the investigation of the effects of the Minoan supervolcanic eruption on Aegian sand fly diversity by Attila J Trájer in The Holocene
sj-pdf-1-vdi-10.1177_10406387211025828 – Supplemental material for Osteomalacia as a result of phosphorus deficiency in beef cattle grazing subtropical native pastures in Uruguay
Creators: name: Schild, Carlos O.
name: Boabaid, Fabiana M.
name: Olivera, Luiz G.S.
name: Machado, Mizael
name: Vildoza, Ana
name: Saravia, Anderson
name: Custodio, Alejandra
name: Command, Carolina
name: Martinez, Agustín
name: Jaurena, Martín
name: Dixon, Rob
name: Riet-Correa, Franklin
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: FOS: Clinical medicine
subject: 70706 Veterinary Medicine
subject: FOS: Veterinary sciences

description: Supplemental material, sj-pdf-1-vdi-10.1177_10406387211025828 for Osteomalacia as a result of phosphorus deficiency in beef cattle grazing subtropical native pastures in Uruguay by Carlos O. Schild, Fabiana M. Boabaid, Luiz G.S. Olivera, Mizael Machado, Ana Vildoza, Anderson Saravia, Alejandra Custodio, Carolina Command, Agustín Martinez, Martín Jaurena, Rob Dixon and Franklin Riet-Correa in Journal of Veterinary Diagnostic Investigation
Decidability for Sturmian words
Creators: name: Hieronymi, Philipp
name: Ma, Dun
name: Oei, Reed
name: Schaeffer, Luke
name: Schulz, Christian
name: Shallit, Jeffrey
Publisher: name: arXiv
Year: 2021
Subjects: subject: Logic in Computer Science (cs.LO)
subject: Combinatorics (math.CO)
subject: Logic (math.LO)
subject: FOS: Computer and information sciences
subject: FOS: Mathematics

description: We show that the first-order theory of Sturmian words over Presburger arithmetic is decidable. Using a general adder recognizing addition in Ostrowski numeration systems by Baranwal, Schaeffer and Shallit, we prove that the first-order expansions of Presburger arithmetic by a single Sturmian word are uniformly $ω$-automatic, and then deduce the decidability of the theory of the class of such structures. Using an implementation of this decision algorithm called Pecan, we automatically reprove classical theorems about Sturmian words in seconds, and are able to obtain new results about antisquares and antipalindromes in characteristic Sturmian words.
A New Measurement of the Spin and Orbital Parameters of the High Mass X-ray Binary Centaurus X-3 using AstroSat
Creators: name: Shirke, Parisee
name: Bala, Suman
name: Roy, Jayashree
name: Bhattacharya, Dipankar
Publisher: name: arXiv
Year: 2021
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: We present the timing results of out-of-eclipse observations of Centaurus X-3 spanning half a binary orbit, performed on 12-13 December, 2016 with the Large Area X-ray Proportional Counter (LAXPC) on-board AstroSat. The pulse profile was confirmed to exhibit a prominent pulse peak with a secondary inter-pulse. The systemic spin period of the pulsar was found to be $4.80188 \pm 0.000085$ s in agreement with its spin up trend. The spin up timescale seems to have increased to $7709 \pm 58$ yr that points to negative torque effects in the inner accretion disk. We also report the derived values of projected semi-major axis and orbital velocity of the neutron star.
description: Accepted for publication in the Special Issue of Journal of Astrophysics and Astronomy on AstroSat: Five Years in Orbit, 7 pages, 6 figures
Additional file 1 of Calcitonin receptor, calcitonin gene-related peptide and amylin distribution in C1/2 dorsal root ganglia
Creators: name: Rees, Tayla A.
name: Tasma, Zoe
name: Garelja, Michael L.
name: O’Carroll, Simon J.
name: Walker, Christopher S.
name: Hay, Debbie L.
Publisher: name: figshare
Year: 2024
Subjects: Biophysics
Biochemistry
Cell Biology
Molecular Biology
Neuroscience
Pharmacology
Biological Sciences not elsewhere classified
Science Policy

description: Supplementary Material 1.
Supplemental Material, sj-pdf-1-cpc-10.1177_10556656211024477 - Awareness of Orofacial Clefts in the Sultanate of Oman
Creators: name: Alawi, Khalifa Al
name: Shaqsi, Sultan Al
name: Ghaithi, Mouzan Al
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 110323 Surgery
subject: FOS: Clinical medicine

description: Supplemental Material, sj-pdf-1-cpc-10.1177_10556656211024477 for Awareness of Orofacial Clefts in the Sultanate of Oman by Khalifa Al Alawi, Sultan Al Shaqsi and Mouzan Al Ghaithi in The Cleft Palate-Craniofacial Journal
Supplemental Material, sj-pdf-1-eax-10.1177_21676968211020880 - Effects of Receiving Genetic Ancestry Results on Emerging Adults’ Ethnic-Racial Identity Affirmation
Creators: name: Williams, Chelsea D.
name: Smith, Tricia
name: Adkins, Amy
name: Walker, Chloe J.
name: Santana, Arlenis
name: Lozada, Fantasy T.
name: Su, Jinni
name: Dick, Danielle M.
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental Material, sj-pdf-1-eax-10.1177_21676968211020880 for Effects of Receiving Genetic Ancestry Results on Emerging Adults’ Ethnic-Racial Identity Affirmation by Chelsea D. Williams, Tricia Smith, Amy Adkins, Chloe J. Walker, Arlenis Santana, Fantasy T. Lozada, Jinni Su and Danielle M. Dick in Emerging Adulthood
sj-pdf-2-pul-10.1177_20458940211024206 - Supplemental material for Pulmonary arterial hypertension associated with congenital heart disease: lessons learnt from the large Turkish Nationwide Registry (THALES)
Creators: name: Kücükoglu, Serdar M.
name: Kaymaz, Cihangir
name: Alehan, Dursun
name: Kula, Serdar
name: Akcevin, Atıf
name: Celiker, Alpay
name: Cicek, Sertac M.
name: Tokgözoglu, Lale S.
name: Kentli, Suleyman
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: Cardiology
subject: 110203 Respiratory Diseases
subject: FOS: Clinical medicine

description: Supplemental material, sj-pdf-2-pul-10.1177_20458940211024206 for Pulmonary arterial hypertension associated with congenital heart disease: lessons learnt from the large Turkish Nationwide Registry (THALES) by Serdar M. Kücükoglu, Cihangir Kaymaz, Dursun Alehan, Serdar Kula, Atıf Akcevin, Alpay Celiker, Sertac M. Cicek, Lale S. Tokgözoglu and Suleyman Kentli On behalf of THALES Registry Investigators in Pulmonary Circulation
DRAGON: Determining Regulatory Associations using Graphical models on multi-Omic Networks
Creators: name: Shutta, Katherine H.
name: Weighill, Deborah
name: Burkholz, Rebekka
name: Guebila, Marouen Ben
name: DeMeo, Dawn L.
name: Zacharias, Helena U.
name: Quackenbush, John
name: Altenbuchinger, Michael
Publisher: name: arXiv
Year: 2021
Subjects: subject: Molecular Networks (q-bio.MN)
subject: FOS: Biological sciences

description: The increasing quantity of multi-omics data, such as methylomic and transcriptomic profiles, collected on the same specimen, or even on the same cell, provide a unique opportunity to explore the complex interactions that define cell phenotype and govern cellular responses to perturbations. We propose a network approach based on Gaussian Graphical Models (GGMs) that facilitates the joint analysis of paired omics data. This method, called DRAGON (Determining Regulatory Associations using Graphical models on multi-Omic Networks), calibrates its parameters to achieve an optimal trade-off between the network's complexity and estimation accuracy, while explicitly accounting for the characteristics of each of the assessed omics "layers." In simulation studies, we show that DRAGON adapts to edge density and feature size differences between omics layers, improving model inference and edge recovery compared to state-of-the-art methods. We further demonstrate in an analysis of joint transcriptome - methylome data from TCGA breast cancer specimens that DRAGON can identify key molecular mechanisms such as gene regulation via promoter methylation. In particular, we identify Transcription Factor AP-2 Beta (TFAP2B) as a potential multi-omic biomarker for basal-type breast cancer. DRAGON is available as open-source code in Python through the Network Zoo package (netZooPy v0.8; netzoo.github.io).
description: 24 pages, 8 figures
Chromosomal Rearrangements in Salmonella enterica Serovar Typhi Strains Isolated from Asymptomatic Human Carriers.
Creators: name: Matthews, T. David
name: Rabsch, Wolfgang
name: Maloy, Stanley
Publisher: name: Robert Koch-Institut, Infektionskrankheiten / Erreger
Year: 2011
Subjects: subject: Humans
subject: Female
subject: Typhoid Fever/microbiology
subject: Carrier State/microbiology
subject: Recombination Genetic
subject: Longitudinal Studies
subject: Bacteriophage Typing
subject: Chromosomes Bacterial/genetics
subject: Gene Rearrangement
subject: Genomic Instability
subject: Salmonella typhi/classification
subject: Salmonella typhi/genetics
subject: Salmonella typhi/isolation & purification
subject: rRNA Operon
subject: 610 Medizin

description: Host-specific serovars of Salmonella enterica often have large-scale chromosomal rearrangements that occur by recombination between rrn operons. Two hypotheses have been proposed to explain these rearrangements: (i) replichore imbalance from horizontal gene transfer drives the rearrangements to restore balance, or (ii) the rearrangements are a consequence of the host-specific lifestyle. Although recent evidence has refuted the replichore balance hypothesis, there has been no direct evidence for the lifestyle hypothesis. To test this hypothesis, we determined the rrn arrangement type for 20 Salmonella enterica serovar Typhi strains obtained from human carriers at periodic intervals over multiple years. These strains were also phage typed and analyzed for rearrangements that occurred over long-term storage versus routine culturing. Strains isolated from the same carrier at different time points often exhibited different arrangement types. Furthermore, colonies isolated directly from the Dorset egg slants used to store the strains also had different arrangement types. In contrast, colonies that were repeatedly cultured always had the same arrangement type. Estimated replichore balance of isolated strains did not improve over time, and some of the rearrangements resulted in decreased replicore balance. Our results support the hypothesis that the restricted lifestyle of host-specific Salmonella is responsible for the frequent chromosomal rearrangements in these serovars. IMPORTANCE Although it was previously thought that bacterial chromosomes were stable, comparative genomics has demonstrated that bacterial chromosomes are dynamic, undergoing rearrangements that change the order and expression of genes. While most Salmonella strains have a conserved chromosomal arrangement type, rearrangements are very common in host-specific Salmonella strains. This study suggests that chromosome rearrangements in the host-specific Salmonella enterica serovar Typhi, the causal agent of typhoid fever, occur within the human host over time. The results also indicate that rearrangements can occur during long-term maintenance on laboratory medium. Although these genetic changes do not limit survival under slow-growth conditions, they may limit the survival of Salmonella Typhi in other environments, as predicted for the role of pseudogenes and genome reduction in niche-restricted bacteria.
A reverse ergodic theorem for inhomogeneous killed Markov chains and application to a new uniqueness result for reflecting diffusions
Creators: name: Costantini, Cristina
name: Kurtz, Thomas G.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Probability (math.PR)
subject: FOS: Mathematics
subject: 60J60, 60H10, 60J55, 60G17

description: Bass and Pardoux (1987) deduce from the Krein-Rutman theorem a reverse ergodic theorem for a sub-probability transition function, which turns out to be a key tool in proving uniqueness of reflecting Brownian Motion in cones in Kwon and Williams (1991) and Taylor and Williams (1993). By a different approach, we are able to prove an analogous reverse ergodic theorem for a family of inhomogeneous sub-probability transition functions. This allows us to prove existence and uniqueness for a semimartingale diffusion process with varying, oblique direction of reflection, in a domain with one singular point that can be approximated, near the singular point, by a smooth cone, under natural, easily verifiable geometric conditions.
 Along the way we also show that if the reflecting Brownian motion in a smooth cone is a semimartingale then the parameter $α$ of Kwon and Williams (1991) is strictly less than 1, thus partially extending the results of Williams (1985) to higher dimension.
Additional file 3 of Evaluation of the Autof ms1000 mass spectrometry for rapid clinical identification of filamentous fungi
Creators: name: Ao, Keping
name: Li, Xiaohan
name: Zhang, Weili
name: Chen, Zhixing
name: Liu, Ya
name: Shu, Ling
name: Xiao, Yuling
name: Wu, Siying
name: Xie, Yi
name: Kang, Mei
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified

description: Table S3? the source and distribution of strains
Additional file 1 of Mental health interventions for individuals with serious mental illness in the criminal legal system: a systematic review
Creators: name: Hailemariam, Maji
name: Bustos, Tatiana E.
name: Montgomery, Barrett Wallace
name: Brown, Garrett
name: Tefera, Gashaye
name: Adaji, Rosemary
name: Taylor, Brandon
name: Eshetu, Hiywote
name: Barajas, Clara
name: Barajas, Rolando
name: Najjar, Vanessa
name: Dennis, Donovan
name: Hudson, Jasmiyne
name: Felton, Julia W.
name: Johnson, Jennifer E.
Publisher: name: figshare
Year: 2024
Subjects: subject: Law
subject: FOS: Law

description: Supplementary Material 1
Golden_Retriever_genotypes
Creators: name: Leeb, Tosso
name: Kiener, Sarah
Publisher: name: University of Bern
publisherIdentifier: https://ror.org/02k7v4d05
publisherIdentifierScheme: ROR
Year: 2025
Subjects: dog
veterinary medicine
dermatology
genetics

description: SNV genotypes of 44 Golden Retrievers, used for linkage and homozygosity mapping of ichthyosis locus. The data are organized into 2 files (.ped, .map), which correspond to standard PLINK format.
Gesundheit von Kindern und Jugendlichen: Start einer Studie
Creators: name: Bergmann, Karl E.
name: Thefeld, Wolfgang
name: Kurth, Bärbel-Maria
Publisher: name: Robert Koch-Institut, Epidemiologie und Gesundheitsberichterstattung
Year: 2003
Subjects: subject: Gesundheitsförderung
subject: Robert-Koch-Institut
subject: Jugendgesundheit
subject: Kindergesundheit
subject: Studie
subject: 610 Medizin

description: Der Kinder- und Jugendgesundheitssurvey des Robert Koch-Instituts untersucht umfassend die Gesundheit der Heranwachsenden in Deutschland.
Tick-borne encephalitis in Europe, 2007 to 2009
Creators: name: Mantke, Oliver Donoso
name: Escadafal, Camille
name: Niedrig, Matthias
name: Pfeffer, M.
Publisher: name: Robert Koch-Institut, Infektionsepidemiologie
Year: 2011
Subjects: subject: Animals
subject: Humans
subject: Population Surveillance
subject: Europe/epidemiology
subject: Health Surveys
subject: Disease Notification
subject: Vaccines
subject: Encephalitis Viruses
subject: Tick-Borne/isolation & purification
subject: Encephalitis Tick-Borne/epidemiology
subject: Tick-Borne/drug effects
subject: Flavivirus/isolation & purification
subject: Public Policy
subject: 610 Medizin

description: As a follow-up of a retrospective survey on tick borneencephalitis (TBE) in 2008, the European Network for Diagnostics of “Imported” Viral Diseases launched a new survey in 2010, to collect broader information on TBE prevalence between 2007 and 2009 and to observe possible changes compared to the previous data. A two-part questionnaire was mailed to contact points in all European Union (EU) Member States and four non-EU countries (Bosnia and Herzegovina, Norway, Russia, and Switzerland). The first part was identical to the 2008 survey, requesting information on case definition, diagnostic methods, investigations regarding tick-transmitted diseases, endemic foci mapping, vaccination programmes, and recommendations for travellers. The second newly added part, inquired about geographic and seasonal distribution of TBE cases, imported cases, TBE subtypes, animal cases, and prevalence in ticks and wildlife hosts. Of 28 participat- ing countries, 16 had TBE as a notifiable disease, as in the first survey. In the 2007–2009 period, the total number of notified cases (17,818) was lower than in 2004–2006 (21,339 cases), also when subtracting Russian cases (8,207 vs 9,073 cases respectively). The highest reported incidence was 18.5 per 100,000 population in Lithuania in 2009. The 2010 study showed that increased numbers of countries used PCR and nucleotide sequencing for particular investigations. Most countries, however, relied on specific antibody detection by enzyme linked immunosorbent assay for TBE laboratory diagnosis. Disparities nevertheless remained across countries regarding case definitions, and surveillance and prevention activities. To understand changing patterns in TBE transmission, surveillance strategies including screening of vector ticks and testing of animal hosts should be harmonised and done more systematically in Europe. Collected data will support rec-ommendations concerning diagnostic and mapping methods, case reporting, vaccination programmes and information campaigns.
1974–2004: 30 Jahre Kommission für Krankenhaushygiene
Creators: name: Exner, Martin
name: Peters, G.
name: Engelhart, S.
name: Mielke, Martin
name: Nassauer, Alfred
Publisher: name: Robert Koch-Institut
Year: 2004
Subjects: subject: Nosokomiale Infektionen
subject: Kommission für Krankenhaushygiene
subject: Richtlinie für Krankenhaushygiene
subject: Kategorien
subject: Rechtliche Aspekte
subject: Nosocomial infections
subject: Commission for Hospital Hygiene
subject: Guideline for Hospital Hygiene
subject: Categories
subject: Legal aspects
subject: 610 Medizin

description: Nach 2-jähriger Vorbereitung durch die 1974 geschaffene Kommission für Krankenhaushygiene wurde vom damaligen Bundesgesundheitsamt (BGA) die "Richtlinie zur Erkennung, Verhütung und Bekämpfung von Krankenhausinfektionen" im Jahr 1976 veröffentlicht. Damit lag eine in ihrer umfassenden Grundkonzeption beispielhafte Richtlinie für Krankenhaushygiene vor. 1997 wurde im Rahmen der Planungen zur Novellierung des Bundes- Seuchengesetzes nach ca. 2-jähriger Unterbrechung der Kommissionsarbeit eine neue Kommission für Krankenhaushygiene und Infektionsprävention berufen,die begann, eine den heutigen Anforderungen an wissenschaftlich begründete Empfehlungen entsprechende Richtlinie auf der Basis einer systematischen Risikoanalyse einschließlich einer Kategorisierung der Aussagen zu bearbeiten. Mit dem im Januar 2001 in Kraft getretenen Infektionsschutzgesetz (IfSG) wurde die Kommission gesetzlich verankert und der Auftrag an die Kommission festgelegt. Ziel der Richtlinie mit ihren Anlagen ist,die Rate nosokomialer Infektionen, die Zahl von Ausbrüchen und die Verbreitung von Erregern mit besonderen Resistenzen in medizinischen Einrichtungen mittels moderner Präventionskonzepte zu senken. In dem Beitrag werden die gesundheitspolitische Bedeutung nosokomialer Infektionen, die Prämissen und die Arbeitsweise sowie der Stand der derzeitigen Arbeit der Kommission dargestellt.
description: After 2 years of preparation, the Commission for Hospital Hygiene, founded in 1974 by the former German Public Health Service, published the "Guideline for Assessment,Prevention, and Controlling of Nosocomial Infections," which represented an exemplarily complete standard for hospital hygiene. In 1997 within the framework of planning the amendment to the Federal Epidemic Law, a new Commission for Hygiene and Infectious Disease Prevention started work and adapted the guideline to meet today's standards of systematic risk analysis and risk management. The amended Infection Protection Act (Infektionsschutzgesetz, IfSG), which came into force in January 2001, installed the Commission for Hospital Hygiene and Infectious Disease Prevention legally and required it to formulate a guideline to decrease the rate of nosocomial infections, the number of outbreaks, and the dissemination of antibiotic-resistant pathogens in healthcare facilities by establishing standards of modern prevention. This article describes the political importance of nosocomial infections for public health as well as the working basis, the methods, and the latest guidelines of the Commission.
Single Dose Novel Salmonella Vaccine Enhances Resistance against Visceralizing L. major and L. donovani Infection in Susceptible BALB/c Mice.
Creators: name: Schroeder, Juliane
name: Brown, Najmeeyah
name: Kaye, Paul
name: Aebischer, Toni
Publisher: name: Robert Koch-Institut, Infektionskrankheiten / Erreger
Year: 2011
Subjects: subject: Animals
subject: Female
subject: Mice
subject: Genetic Vectors
subject: Mice Inbred BALB C
subject: Disease Models Animal
subject: Leishmania major/immunology
subject: Antigens Protozoan/genetics
subject: Antigens Protozoan/immunology
subject: Drug Carriers/administration & dosage
subject: Leishmania donovani/genetics
subject: Leishmania donovani/immunology
subject: Leishmania major/genetics
subject: Leishmaniasis Vaccines/administration & dosage
subject: Leishmaniasis Vaccines/genetics
subject: Leishmaniasis Vaccines/immunology
subject: Leishmaniasis Visceral/immunology
subject: Leishmaniasis Visceral/parasitology
subject: Leishmaniasis Visceral/prevention & control
subject: Salmonella typhimurium/genetics
subject: Vaccines Synthetic/administration & dosage
subject: Vaccines Synthetic/genetics
subject: Vaccines Synthetic/immunology
subject: 610 Medizin

description: Visceral leishmaniasis is a major neglected tropical disease, with an estimated 500,000 new cases and more than 50,000 deaths attributable to this disease every year. Drug therapy is available but costly and resistance against several drug classes has evolved. Despite all efforts, no commercial, let alone affordable, vaccine is available to date. Thus, the development of cost effective, needle-independent vaccines is a high priority. Here, we have continued efforts to develop live vaccine carriers based on recombinant Salmonella. We used an in silico approach to select novel Leishmania parasite antigens from proteomic data sets, with selection criteria based on protein abundance, conservation across Leishmania species and low homology to host species. Five chosen antigens were differentially expressed on the surface or in the cytosol of Salmonella typhimurium SL3261. A two-step procedure was developed to select optimal Salmonella vaccine strains for each antigen, based on bacterial fitness and antigen expression levels. We show that vaccine strains of Salmonella expressing the novel Leishmania antigens LinJ08.1190 and LinJ23.0410 significantly reduced visceralisation of L. major and enhanced systemic resistance against L. donovani in susceptible BALB/c mice. The results show that Salmonella are valid vaccine carriers for inducing resistance against visceral leishmaniasis but that their use may not be suitable for all antigens.
Survey instrument for the SPARC Europe Open Education (OE) in European Libraries of Higher Education Survey 2022
Creators: name: Santos, Gema
name: Corti, Paola
name: Proudman, Vanessa
Publisher: name: Zenodo
Year: 2022
Subjects: survey, open education, oer, oep, UNESCO, Europe, Higher Education, SPARC Europe

description: This is the survey instrument for the SPARC Europe Open Education (OE) in European Libraries of Higher Education Survey 2022. The survey deadline has been extended to 31 May 2022. Please download version 3.
sj-docx-2-aor-10.1177_00034894211024049 – Supplemental material for A Systematic Literature Review to Compare Clinical Outcomes of Different Surgical Techniques for Second Branchial Cyst Removal
Creators: name: Meijers, Sebastiaan
name: Meijers, Rutger
name: van der Veen, Erwin
name: van den Aardweg, Maaike
name: Bruijnzeel, Hanneke
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 110315 Otorhinolaryngology
subject: FOS: Clinical medicine

description: Supplemental material, sj-docx-2-aor-10.1177_00034894211024049 for A Systematic Literature Review to Compare Clinical Outcomes of Different Surgical Techniques for Second Branchial Cyst Removal by Sebastiaan Meijers, Rutger Meijers, Erwin van der Veen, Maaike van den Aardweg and Hanneke Bruijnzeel in Annals of Otology, Rhinology & Laryngology
sj-pdf-1-ppa-10.1177_09520767211022490 - Supplemental material for Blame avoidance, scapegoats and spin: Why Dutch politicians won’t evaluate ZBO-outcomes
Creators: name: van Thiel, Sandra
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 160607 International Relations
subject: FOS: Political science
subject: 160509 Public Administration
subject: 160512 Social Policy

description: Supplemental material, sj-pdf-1-ppa-10.1177_09520767211022490 for Blame avoidance, scapegoats and spin: Why Dutch politicians won’t evaluate ZBO-outcomes by Sandra van Thiel in Public Policy and Administration
sj-docx-1-sci-10.1177_00368504211026159 – Supplemental material for The effectiveness of nurse-led self-management support program for people with chronic kidney disease stage 3-4 (CKD-NLSM): Study protocol for a randomized controlled trial
Creators: name: Ayat Ali, Al Sawad
name: Lim, Soo Kun
name: Tang, Li Yoong
name: Rashid, Aneesa Abdul
name: Chew, Boon-How
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Supplemental material, sj-docx-1-sci-10.1177_00368504211026159 for The effectiveness of nurse-led self-management support program for people with chronic kidney disease stage 3-4 (CKD-NLSM): Study protocol for a randomized controlled trial by Al Sawad Ayat Ali, Soo Kun Lim, Li Yoong Tang, Aneesa Abdul Rashid and Boon-How Chew in Science Progress
sj-pdf-1-jpc-10.1177_21501327211027437 – Supplemental material for Critical Role of General Practitioners in Preventing Readmission Following Emergency Department Alcohol Screening and Brief Intervention Management of Alcohol-Related Problems
Creators: name: Hazeldine, Simon
name: Davies, Imogen
name: Tait, Robert J.
name: Olynyk, John K.
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 111708 Health and Community Services
subject: FOS: Health sciences
subject: 111799 Public Health and Health Services not elsewhere classified

description: Supplemental material, sj-pdf-1-jpc-10.1177_21501327211027437 for Critical Role of General Practitioners in Preventing Readmission Following Emergency Department Alcohol Screening and Brief Intervention Management of Alcohol-Related Problems by Simon Hazeldine, Imogen Davies, Robert J. Tait and John K. Olynyk in Journal of Primary Care & Community Health
Additional file 2 of Mental health interventions for individuals with serious mental illness in the criminal legal system: a systematic review
Creators: name: Hailemariam, Maji
name: Bustos, Tatiana E.
name: Montgomery, Barrett Wallace
name: Brown, Garrett
name: Tefera, Gashaye
name: Adaji, Rosemary
name: Taylor, Brandon
name: Eshetu, Hiywote
name: Barajas, Clara
name: Barajas, Rolando
name: Najjar, Vanessa
name: Dennis, Donovan
name: Hudson, Jasmiyne
name: Felton, Julia W.
name: Johnson, Jennifer E.
Publisher: name: figshare
Year: 2024
Subjects: subject: Law
subject: FOS: Law

description: Supplementary Material 2
sj-docx-1-uex-10.1177_00420859211017967 – Supplemental material for On the Abolition of Belonging as Property: Toward Justice for Immigrant Children of Color
Creators: name: Souto-Manning, Mariana
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: Education
subject: 120599 Urban and Regional Planning not elsewhere classified
subject: FOS: Social and economic geography

description: Supplemental material, sj-docx-1-uex-10.1177_00420859211017967 for On the Abolition of Belonging as Property: Toward Justice for Immigrant Children of Color by Mariana Souto-Manning in Urban Education
Uniform Fourier restriction for convex curves
Creators: name: Fraccaroli, Marco
Publisher: name: arXiv
Year: 2021
Subjects: subject: Classical Analysis and ODEs (math.CA)
subject: FOS: Mathematics
subject: 42B10, 42B25

description: We extend the estimates for maximal Fourier restriction operators proved by Müller, Ricci, and Wright in \cite{MR3960255} and Ramos in \cite{MR4055940} to the case of arbitrary convex curves in the plane, with constants uniform in the curve. The improvement over Müller, Ricci, and Wright and Ramos is given by the removal of the $\mathcal{C}^2$ regularity condition on the curve. This requires the choice of an appropriate measure for each curve, that is suggested by an affine invariant construction of Oberlin in \cite{MR1960918}. As corollaries, we obtain a uniform Fourier restriction theorem for arbitrary convex curves, and a result on the Lebesgue points of the Fourier transform on the curve.
description: v2: 29 pages, 6 figures. Additional references, clarifying comment in proof of Lemma 4.2 Case II, and lemmata A.17--19 and figure 6 to improve exposition of proof of Thm 2.5 in Appendix. No changes to results or proofs
Distance-four quantum codes with combined postselection and error correction
Creators: name: Prabhu, Prithviraj
name: Reichardt, Ben W.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: When storing encoded qubits, if single faults can be corrected and double faults postselected against, logical errors only occur due to at least three faults. At current noise rates, having to restart when two errors are detected prevents very long-term storage, but this should not be an issue for low-depth computations. We consider distance-four, efficient encodings of multiple qubits into a modified planar patch of the $16$-qubit surface code. We simulate postselected error correction for up to $12000$ rounds of parallel stabilizer measurements, and subsequently estimate the cumulative probability of logical error for up to twelve encoded qubits.
 Our results demonstrate a combination of low logical error rate and low physical overhead. For example, the distance-four surface code, using postselection, accumulates $25$ times less error than its distance-five counterpart. For $six$ encoded qubits, a distance-four code using $25$ qubits protects as well as the distance-five surface code using $246$ qubits.
 Hence distance-four codes, using postselection and in a planar geometry, are qubit-efficient candidates for fault-tolerant, moderate-depth computations.
description: 12 pages, 13 figures
Additional file 1 of Comparative efficacy of oral drugs for chronic radiation proctitis — a systematic review
Creators: name: Liu, Liangzhe
name: Xiao, Nana
name: Liang, Jinjun
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Science Policy

description: Additional file 1.
sj-docx-1-pol-10.1177_02633957211019587 – Supplemental material for Populism and new radical-right parties: The case of VOX
Creators: name: Marcos-Marne, Hugo
name: Plaza-Colodro, Carolina
name: O’Flynn, Ciaran
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 160607 International Relations
subject: FOS: Political science

description: Supplemental material, sj-docx-1-pol-10.1177_02633957211019587 for Populism and new radical-right parties: The case of VOX by Hugo Marcos-Marne, Carolina Plaza-Colodro and Ciaran O’Flynn in Politics
sj-docx-1-scx-10.1177_10755470211022024 – Supplemental material for Debunking Misinformation About Genetically Modified Food Safety on Social Media: Can Heuristic Cues Mitigate Biased Assimilation?
Creators: name: Wang, Yuan
Publisher: name: SAGE Journals
Year: 2021
Subjects: Communication and Media Studies not elsewhere classified
Science Policy

description: Supplemental material, sj-docx-1-scx-10.1177_10755470211022024 for Debunking Misinformation About Genetically Modified Food Safety on Social Media: Can Heuristic Cues Mitigate Biased Assimilation? by Yuan Wang in Science Communication
Influenza A Virus Inhibits Type I IFN Signaling via NF-κB-Dependent Induction of SOCS-3 Expression
Creators: name: Pauli, Eva-K.
name: Schmolke, Mirko
name: Wolff, Thorsten
name: Viemann, Dorothee
name: Roth, Johannes
name: Bode, Johannes G.
name: Ludwig, Stephan
Publisher: name: Robert Koch-Institut, Infektionskrankheiten / Erreger
Year: 2008
Subjects: subject: Animals
subject: Humans
subject: RNA
subject: Cell Line
subject: Gene Expression Regulation*
subject: Influenza A virus/physiology*
subject: Interferon Type I/antagonists & inhibitors*
subject: Interferon Type I/pharmacology
subject: NF-kappa B/metabolism*
subject: Phosphorylation
subject: Messenger/analysis
subject: STAT1 Transcription Factor/metabolism
subject: Signal Transduction*
subject: Suppressor of Cytokine Signaling Proteins/genetics*
subject: Virus Replication
subject: 610 Medizin

description: The type I interferon (IFN) system is a first line of defense against viral infections. Viruses have developed various mechanisms to counteract this response. So far, the interferon antagonistic activity of influenza A viruses was mainly observed on the level of IFNbeta gene induction via action of the viral non-structural protein 1 (NS1). Here we present data indicating that influenza A viruses not only suppress IFNbeta gene induction but also inhibit type I IFN signaling through a mechanism involving induction of the suppressor of cytokine signaling-3 (SOCS-3) protein. Our study was based on the observation that in cells that were infected with influenza A virus and subsequently stimulated with IFNalpha/beta, phosphorylation of the signal transducer and activator of transcription protein 1 (STAT1) was strongly reduced. This impaired STAT1 activation was not due to the action of viral proteins but rather appeared to be induced by accumulation of viral 5' triphosphate RNA in the cell. SOCS proteins are potent endogenous inhibitors of Janus kinase (JAK)/STAT signaling. Closer examination revealed that SOCS-3 but not SOCS-1 mRNA levels increase in an RNA- and nuclear factor kappa B (NF-kappaB)-dependent but type I IFN-independent manner early in the viral replication cycle. This direct viral induction of SOCS-3 mRNA and protein expression appears to be relevant for suppression of the antiviral response since in SOCS-3 deficient cells a sustained phosphorylation of STAT1 correlated with elevated expression of type I IFN-dependent genes. As a consequence, progeny virus titers were reduced in SOCS-3 deficient cells or in cells were SOCS-3 expression was knocked-down by siRNA. These data provide the first evidence that influenza A viruses suppress type I IFN signaling on the level of JAK/STAT activation. The inhibitory effect is at least in part due to the induction of SOCS-3 gene expression, which results in an impaired antiviral response.
sj-pdf-1-pul-10.1177_20458940211025240 - Supplemental material for Vascular cell-specific roles of mineralocorticoid receptors in pulmonary hypertension
Creators: name: Menon, Divya P.
name: Qi, Guanming
name: Kim, Seung K.
name: Moss, M. Elizabeth
name: Penumatsa, Krishna C.
name: Warburton, Rod R.
name: Toksoz, Deniz
name: Wilson, Jamie
name: Hill, Nicholas S.
name: Jaffe, Iris Z.
name: Preston, Ioana R.
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: Cardiology
subject: 110203 Respiratory Diseases
subject: FOS: Clinical medicine

description: Supplemental material, sj-pdf-1-pul-10.1177_20458940211025240 for Vascular cell-specific roles of mineralocorticoid receptors in pulmonary hypertension by Divya P. Menon, Guanming Qi, Seung K. Kim, M. Elizabeth Moss, Krishna C. Penumatsa, Rod R. Warburton, Deniz Toksoz, Jamie Wilson, Nicholas S. Hill, Iris Z. Jaffe and Ioana R. Preston: On behalf of THALES Registry Investigators in Pulmonary Circulation
sj-pdf-1-pul-10.1177_20458940211024206 - Supplemental material for Pulmonary arterial hypertension associated with congenital heart disease: lessons learnt from the large Turkish Nationwide Registry (THALES)
Creators: name: Kücükoglu, Serdar M.
name: Kaymaz, Cihangir
name: Alehan, Dursun
name: Kula, Serdar
name: Akcevin, Atıf
name: Celiker, Alpay
name: Cicek, Sertac M.
name: Tokgözoglu, Lale S.
name: Kentli, Suleyman
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: Cardiology
subject: 110203 Respiratory Diseases
subject: FOS: Clinical medicine

description: Supplemental material, sj-pdf-1-pul-10.1177_20458940211024206 for Pulmonary arterial hypertension associated with congenital heart disease: lessons learnt from the large Turkish Nationwide Registry (THALES) by Serdar M. Kücükoglu, Cihangir Kaymaz, Dursun Alehan, Serdar Kula, Atıf Akcevin, Alpay Celiker, Sertac M. Cicek, Lale S. Tokgözoglu and Suleyman Kentli On behalf of THALES Registry Investigators in Pulmonary Circulation
Type-II Dirac Nodal Lines in double-kagome-layered CsV$_8$Sb$_{12}$
Creators: name: Cai, Yongqing
name: Wang, Jianfeng
name: Wang, Yuan
name: Hao, Zhanyang
name: Liu, Yixuan
name: Jiang, Zhicheng
name: Sui, Xuelei
name: Ma, Xiaoming
name: Zhang, Chengcheng
name: Shen, Zecheng
name: Yang, Yichen
name: Liu, Wanling
name: Jiang, Qi
name: Liu, Zhengtai
name: Ye, Mao
name: Shen, Dawei
name: Liu, Yi
name: Cui, Shengtao
name: Wang, Le
name: Liu, Cai
name: Lin, Junhao
name: Huang, Bing
name: Mei, Jia-Wei
name: Chen, Chaoyu
Publisher: name: arXiv
Year: 2022
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Lorentz-violating type-II Dirac nodal line semimetals (DNLSs), hosting curves of band degeneracy formed by two dispersion branches with the same sign of slope, represent a novel states of matter. While being studied extensively in theory, convincing experimental evidences of type-II DNLSs remain elusive. Recently, Vanadium-based kagome materials have emerged as a fertile ground to study the interplay between lattice symmetry and band topology. In this work, we study the low-energy band structure of double-kagome-layered CsV$_8$Sb$_{12}$ and identify it as a scarce type-II DNLS protected by mirror symmetry. We have observed multiple DNLs consisting of type-II Dirac cones close to or almost at the Fermi level via angle-resolved photoemission spectroscopy (ARPES). First-principle analyses show that spin-orbit coupling only opens a small gap, resulting effectively gapless ARPES spectra, yet generating large spin Berry curvature. These type-II DNLs, together with the interaction between a low-energy van Hove singularity and quasi-1D band as we observed in the same material, suggest CsV$_8$Sb$_{12}$ as an ideal platform for exploring novel transport properties such as chiral anomaly, the Klein tunneling and fractional quantum Hall effect.
description: 10 pages, 4 figures
On the computational properties of basic mathematical notions
Creators: name: Normann, Dag
name: Sanders, Sam
Publisher: name: arXiv
Year: 2022
Subjects: subject: Logic (math.LO)
subject: Logic in Computer Science (cs.LO)
subject: FOS: Mathematics
subject: FOS: Computer and information sciences
subject: F.1.1
subject: 03D55, 03D75

description: We investigate the computational properties of basic mathematical notions pertaining to $\mathbb{R}\rightarrow \mathbb{R}$-functions and subsets of $\mathbb{R}$, like finiteness, countability, (absolute) continuity, bounded variation, suprema, and regularity. We work in higher-order computability theory based on Kleene's S1-S9 schemes. We show that the aforementioned italicised properties give rise to two huge and robust classes of computationally equivalent operations, the latter based on well-known theorems from the mainstream mathematics literature. As part of this endeavour, we develop an equivalent $λ$-calculus formulation of S1-S9 that accommodates partial objects. We show that the latter are essential to our enterprise via the study of countably based and partial functionals of type $3$.
description: The lambda calculus introduced in Section 3 of this paper unfortunately suffers from a technical error. The latter was communicated to us in a private communication by John Longley. A corrected version may be found in Section 5 of arXiv:2401.09053. The computability theoretic results in this paper remain unaffected
Additional file 1 of Identification of TRPM2 as a prognostic factor correlated with immune infiltration in ovarian cancer
Creators: name: Huang, Wei
name: Wu, Yuliang
name: Luo, Ning
name: Shuai, Xueqian
name: Guo, Jing
name: Wang, Chunyan
name: Yang, Fanchun
name: Liu, Li
name: Liu, Shupeng
name: Cheng, Zhongping
Publisher: name: figshare
Year: 2024
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Supplementary Material 1
Port-Hamiltonian Fluid-Structure Interaction Modeling and Structure-Preserving Model Order Reduction of a Classical Guitar
Creators: name: Rettberg, Johannes
name: Wittwar, Dominik
name: Buchfink, Patrick
name: Brauchler, Alexander
name: Ziegler, Pascal
name: Fehr, Jörg
name: Haasdonk, Bernard
Publisher: name: arXiv
Year: 2022
Subjects: subject: Dynamical Systems (math.DS)
subject: Numerical Analysis (math.NA)
subject: FOS: Mathematics

description: A fluid-structure interaction model in a port-Hamiltonian representation is derived for a classical guitar. We combine the laws of continuum mechanics for solids and fluids within a unified port-Hamiltonian (pH) modeling approach by adapting the discretized equations on second-order level in order to obtain a damped multi-physics model. The high-dimensionality of the resulting system is reduced by model order reduction. The article focuses on pH-systems in different state transformations, a variety of basis generation techniques as well as structure-preserving model order reduction approaches that are independent from the projection basis. As main contribution a thorough comparison of these method combinations is conducted. In contrast to typical frequency-based simulations in acoustics, transient time simulations of the system are presented. The approach is embedded into a straightforward workflow of sophisticated commercial software modeling and flexible in-house software for multi-physics coupling and model order reduction.
description: 27 pages, 11 figures
BIODIESEL PRODUCTION FROM Ziziphus abyssinica HOCHST. EX A. RICH. (RHAMNACEAE) SEED OIL USING MODIFIED MAGNETIC SAND AS HETEROGENEOUS CATALYST
Creators: name: Bukar Wakil
name: Onen Alfred
name: Aisha Bukar Zanna
name: Joseph Clement Akan
name: James Yakubu
name: Umar Tanko Mamza
name: Mohammed Goni
Publisher: name: Journal of Scientific Research (JSR), University of Maiduguri, Department of Pure and Applied Chemistry
Year: 2024

description: ABSTRACT

Biodiesel is an alternative fuel made from renewable biological sources such as vegetable oils (both edible and non-edible oil) and animal fats. This study aimed to produce biodiesel from Zizipus abyssinica using magnetic sand as heterogeneous catalyst. The catalyst was characterized using both physical and X-ray diffraction, (XRD) techniques. X-ray diffraction (XRD) analyzed the crystal structure and particle size in order to obtain information on the surface area of catalyst. Physicochemical analysis of Zizipus abyssinica seed oil revealed that ash content was 0.04 %, specific gravity (0.98), moisture content (0.07 %), acid value (4.38 %), free fatty acid (2.19 %), viscosity (4.93 cSt) and pH 6.8.  The energy dispersive X-ray of magnetic sand revealed that silicon and potassium have the higher atomic and weight concentration while iron and titanium show no concentration as presented. The characterization results revealed high atomic concentration of Si (77.14 %), followed by K (10.92 %), Al (4.77 %), Ca (1.50%), Fe (1.36 %), S (1.11%), Ag (0.66 %), Mg (0.60 %), Zr (0.60 %) and Na (0.27 %). The main peaks of 19.40, 21.50 250 270, 280, 28.80, 370. 400, 40.70, 50.70, 55.30, 60.30, 650 and 690 were all present in the XRD spectrum of' Sand/MgO, intensities have significantly increased. The size of the crystal was measured to be 100 μm with uniform distribution. The variation of amount of catalyst [W%] was methyl ester yield, the most notable catalyst used in producing biodiesel is the homogeneous alkaline catalyst which is due to their higher kinetic reaction rates.  The magnetic sand was found to exhibit catalytic activity in the conversion of Ziziphus abyssinica seed oil to its methyl-ester as further proved by FT – IR analysis. A discovery such as this is indeed an addition to the indigenous catalyst that are cheaper and easily accessible.

Keywords: Ziziphus abyssinica; Biodiesel; Catalyst; X-ray Diffraction (XRD); Seed Oil