cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Cytocompatibility Evaluation of PEG-Methylsulfone Hydrogels
Creators: name: Trujillo, Sara
name: Kasper, Jennifer
name: De Miguel-Jiménez, Adrián
name: Abt, Britta
name: Bauer, Alina
name: Mekontso, Joëlle
name: Pearson, Samuel
name: Del Campo, Aránzazu
Publisher: name: Berkeley, CA : University of California
Year: 2023
Subjects: subject: Assays
subject: Cells
subject: Hydrogels
subject: Nucleic acid structure
subject: Peptides and proteins
subject: 540
subject: 660

description: Methylsulfone derivatized poly(ethylene) glycol (PEG) macromers can be biofunctionalized with thiolated ligands and cross-linked with thiol-based cross-linkers to obtain bioactive PEG hydrogels for in situ cell encapsulation. Methylsulfonyl-thiol (MS-SH) reactions present several advantages for this purpose when compared to other thiol-based cross-linking systems. They proceed with adequate and tunable kinetics for encapsulation, they reach a high conversion degree with good selectivity, and they generate stable reaction products. Our previous work demonstrated the cytocompatibility of cross-linked PEG-MS/thiol hydrogels in contact with fibroblasts. However, the cytocompatibility of the in situ MS-SH cross-linking reaction itself, which generates methylsulfinic acid as byproduct at the cross-linked site, remains to be evaluated. These studies are necessary to evaluate the potential of these systems for in vivo applications. Here we perform an extensive cytocompatibility study of PEG hydrogels during in situ cross-linking by the methylsulfonyl-thiol reaction. We compare these results with maleimide-thiol cross-linked PEGs which are well established for cell culture and in vivo experiments and do not involve the release of a byproduct. We show that fibroblasts and endothelial cells remain viable after in situ polymerization of methylsulfonyl-thiol gels on the top of the cell layers. Cell viability seems better than after in situ cross-linking hydrogels with maleimide-thiol chemistry. The endothelial cell proinflammatory phenotype is low and similar to the one obtained by the maleimide-thiol reaction. Finally, no activation of monocytes is observed. All in all, these results demonstrate that the methylsulfonyl-thiol chemistry is cytocompatible and does not trigger high pro-inflammatory responses in endothelial cells and monocytes. These results make methylsulfonyl-thiol chemistries eligible for in vivo testing and eventually clinical application in the future.
Additional file 9: of LATE ELONGATED HYPOCOTYL regulates photoperiodic flowering via the circadian clock in Arabidopsis
Creators: name: Park, Mi-Jeong
name: Kwon, Young-Ju
name: Kyung-Eun Gil
name: Chung-Mo Park
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Expression of flowering genes in lhy-7 mutant under SDs of 20-h total duration. Plants were grown for 10 days under short-day cycles of 20-h total duration (6.7-h light and 13.3-h dark). Whole plant materials were harvested for total RNA extraction. Transcript levels were examined by qRT-PCR. Biological triplicates were averaged and statistically treated using Student t-test (*P
Additional file 1: Table S1. of Angiogenesis related genes NOS3, CD14, MMP3 and IL4R are associated to VEGF gene expression and circulating levels in healthy adults
Creators: name: Abdelsalam Saleh
name: Stathopoulou, Maria
name: SĂŠbastien DadĂŠ
name: Ndeye Ndiaye
name: Azimi-Nezhad, Mohsen
name: Murray, Helena
name: Masson, Christine
name: Lamont, John
name: Fitzgerald, Peter
name: Visvikis-Siest, Sophie
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: VEGF plasma and expression levels per genotype. Table S2. VEGF plasma and expression levels per interaction condition. (DOCX 72 kb)
Additional file 4: Table S3. of Genome-wide analysis and expression profiling of the PIN auxin transporter gene family in soybean (Glycine max)
Creators: name: Yongqin Wang
name: Chenglin Chai
name: Valliyodan, Babu
name: Maupin, Christine
name: Annen, Brad
name: Nguyen, Henry
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology
subject: 60506 Virology

description: Primers used for the qRT-PCR analysis. (PDF 476 kb)
A tandem of GC-MS and electroanalysis for a rapid chemical profiling of bacterial extracellular matrix
Creators: name: Silina, Y. E.
name: Zolotukhina, E. V.
name: Koch, M.
name: Fink‐Straube, C.
Publisher: name: Weinheim : Wiley-VCH-Verl.
Year: 2023
Subjects: subject: cyclic voltammetry
subject: E. coli extracellular matrix
subject: electrochemical profiling
subject: Pd-ink-modified electrode
subject: 540

description: Herein an assay toward a rapid and reliable profiling of extracellular matrix of Escherichia coli (E. coli) utilizing a tandem of GC-MS as a tool for definition of the exact chemical nature of low molecular weight compounds and cyclic voltammetry for their high throughput detection is presented. Briefly, during a set of investigations the formation of glycerol in the extracellular matrix (ECM) of E. coli at physiological relevant conditions of cells was revealed. Based on the obtained knowledge, the electrochemical protocol allowing both qualitative and quantitative analyses of glycerol in E. coli ECMs at palladium ink-modified screen printed electrodes with precision values (RSD) <10 % and recovery rates ranged from 98 % to 102 % was proposed. The provided protocol for a rapid electrochemical profiling of the bacterial ECMs can readily be used as a guideline for the controlled electroanalysis of target electroactive signaling analytes in complex biological samples.
Additional file 7: of LATE ELONGATED HYPOCOTYL regulates photoperiodic flowering via the circadian clock in Arabidopsis
Creators: name: Park, Mi-Jeong
name: Kwon, Young-Ju
name: Kyung-Eun Gil
name: Chung-Mo Park
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: ChIP assays on LHY binding to GI promoter. Chromatins were prepared from 7-day-old whole plants grown on MS-agar plates and immunoprecipitated using an anti-MYC antibody. Fragmented genomic DNA was eluted from the protein-DNA complexes and subjected to quantitative PCR. Biological triplicates were averaged and statistically treated using Student t-test (*Pâ
Anatomy of the Class I protostar L1489 IRS with NOEMA -- I. Disk, streamers, outflow(s) and bubbles at 3mm
Creators: name: Tanious, M.
name: Gal, R. Le
name: Neri, R.
name: Faure, A.
name: Gupta, A.
name: Law, C. J.
name: Huang, J.
name: Cuello, N.
name: Williams, J. P.
name: Ménard, F.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Over the past few years, chemical studies have revealed multiple structures in the vicinity of young stellar objects (YSOs). It has become evident that specific physical conditions are associated with the emission of particular molecular lines, allowing us to use molecular probes of the YSO physics. Consequently, chemical surveys are now necessary to fully constrain the origin of the observed structures. Several surveys have been conducted to explore the chemistry of YSOs, focusing on Class 0 and Class II objects. However, our knowledge of intermediate objects, that are Class I objects, remains limited. To bridge the gap and establish the relationship between observed structures and molecular line emission at the Class I evolutionary stage, we investigate the spatial distribution of key molecular gas species in the low-mass Class I protostar L1489 IRS (IRAS 04016+2610), a source part of the ChemYSO survey. We performed a 3mm line survey at high spatial and high spectral resolution using the NOEMA interferometer and the IRAM-30m telescope. We present here the ten brightest lines of our survey, in which we identified a new ~ 3 000 au long streamer in HC3N, C2H, and c-C3H2 emission, likely associated with more localized accretion shocks probed in SO. In addition, two ~ 10 000 au bubbles are seen with the dense molecular tracers HCO+, CS, and HCN around the YSO. Additionally, potential indicators of a second outflow appear in CS and HCN emission, but its nature remains to be confirmed. The late infall identified at large scales may originate from the nearby prestellar core L1489 and is likely responsible for the formation of an external warped disk in this system. The detection of a potential second outflow could be the direct evidence of a binary system. Finally, we hypothesize that the bubbles may result from the magnetic pressure as observed in numerical simulations.
description: 16 pages, 12 figures, accepted for publication in Astronomy & Astrophysics
Additional file 1: of Certainty rating in pre-and post-tests of study modules in an online clinical pharmacy course - A pilot study to evaluate teaching and learning
Creators: name: Luetsch, Karen
name: Burrows, Judith
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Student questionnaire. (DOCX 11Â kb)
Emotionale Liebe oder gefährliche Zuneigung : Sexuelle Übergriffe an Kindern
Creators: name: Götze, Sabine
Publisher: name: Hochschulbibliothek, Hochschule Merseburg
Year: 2019
Subjects: subject: Sexuelle Übergriffe
subject: Kinder
subject: sexueller Missbrauch
subject: Pädophilie
subject: Pädosexualität
subject: Kindeswohlgefährdung
subject: DDC::300 Sozialwissenschaften::340 Recht::345 Strafrecht

description: Sexualität beschäftigt Menschen in jedem Lebensalter, in allen Kulturkreisen und findet unter allen Geschlechtern, männlich, weiblich und divers, statt. Sie gehört genauso zu den Grundbedürfnissen, wie die Nahrungsaufnahme, dem Schlaf und dem Bedürfnis nach Si-cherheit und Zuwendung. Und doch ist gerade die Sexualität ein Tabuthema und ein heiß geliebtes Thema zugleich. Es ist immer ein schmaler Grat zwischen Normalität und Ano-malie. Gerade was die Sexualität bei Kindern angeht, scheint dieses Bedürfnis in den Köp-fen der Erwachsenen nicht zu existieren. Erst mit Eintritt der Pubertät erlangt diese Thematik wieder an Bedeutung. Vorher geht es um den Schutz des Kindes, und das von Geburt an. Die Angst, dass die eigenen Kinder Opfer einer sexuellen Gewalttat werden ist subtil vermutlich in jedem Elternteil vorhanden. Genau deswegen wägen sich die meisten Eltern und Bezugspersonen in familiärer Sicher-heit. Und doch zeigt sich immer wieder, dass sexueller Missbrauch genau da vorkommt, in den Schutzräumen des Kindes, begangen von den vertrauten Personen, den Geschwistern, den eigenen Eltern oder den Großeltern. Die von mir vorliegende Arbeit beschäftigt sich also mit dem sexuellen Missbrauch an Kindern in vertrauter Umgebung.
Impact of a $MoS_2$ monolayer on the nanoscale thermoelastic response of silicon heterostructures
Creators: name: Soranzio, Davide
name: Puntel, Denny
name: Tuniz, Manuel
name: Majchrzak, Paulina E.
name: Milloch, Alessandra
name: Olsen, Nicholas M.
name: Bronsch, Wibke
name: Jessen, Bjarke S.
name: Fainozzi, Danny
name: Cresi, Jacopo S. Pelli
name: De Angelis, Dario
name: Foglia, Laura
name: Mincigrucci, Riccardo
name: Zhu, Xiaoyang
name: Dean, Cory R.
name: Ulstrup, Søren
name: Banfi, Francesco
name: Giannetti, Claudio
name: Parmigiani, Fulvio
name: Bencivenga, Filippo
name: Cilento, Federico
Publisher: name: arXiv
Year: 2024
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Understanding the thermoelastic response of a nanostructure is crucial for the choice of materials and interfaces in electronic devices with improved and tailored transport properties, at the length scales of the present technology. Here we show how the deposition of a $MoS_2$ monolayer can strongly modify the nanoscale thermoelastic dynamics of silicon substrates close to their interface. We achieve this result by creating a transient grating with extreme ultraviolet light, using ultrashort free-electron laser pulses, whose $\approx$84 nm period is comparable to the size of elements typically used in nanodevices, such as electric contacts and nanowires. The thermoelastic response, featured by coherent acoustic waves and an incoherent relaxation, is tangibly modified by the presence of monolayer $MoS_2$. Namely, we observed a major reduction of the amplitude of the surface mode, which is almost suppressed, while the longitudinal mode is basically unperturbed, aside from a faster decay of the acoustic modulations. We interpret this behavior as a selective modification of the surface elasticity and we discuss the conditions to observe such effect, which might be of immediate relevance for the design of Si-based nanoscale devices.
description: 27 pages, 15 figures
Additional file 1: Table S1. of Genome-wide analysis and expression profiling of the PIN auxin transporter gene family in soybean (Glycine max)
Creators: name: Yongqin Wang
name: Chenglin Chai
name: Valliyodan, Babu
name: Maupin, Christine
name: Annen, Brad
name: Nguyen, Henry
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: GmPINs gene information. (PDF 81 kb)
Edwardzetes edwardsi
Creators: name: Weigmann, G.
name: Miko, L.
Publisher: name: Goecke & Evers
Year: 2006
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Sarcoptiformes
Ceratozetidae
Edwardzetes
Edwardzetes edwardsi

description: Edwardzetes edwardsi (Nicolet, 1855) [209a-c]
Diagnose: Sehr lange Prodorsalborsten; ss dick spindelförmig, granuliert: RO vorn gerade halbrohr-förmig vorgezogen; Trl variabel: als undeutliche Linie bis schmales Band; 10 Paar ng, steif, bis um 100 µm lang; NG-Kutikula grob granuliert. Körperlänge 680-860 µm.
Syn., Tax.: Oribata edwardsii Nicolet, 1855. Sphaerozetes (Edwardzetes) e.: Berlese 1914. Edwardzetes e.: Willmann 1931 (B); Ghilarov & Krivoluckij 1975 (B); Seniczak et al. 1990a (B); Perez-Inigo 1993 (B).
Ökologie: In Heide- und Waldböden, selten.
Verbreitung: Paläarktis.
description: Published as part of Weigmann, G. & Miko, L., 2006, Hornmilben (Oribatida) [pages 323 to 417], pp. 323-417 in Hornmilben (Oribatida) [Dahl, Tierwelt Deutschlands, Teil 76], Keltern :Goecke & Evers on page 390
Additional file 6: of LATE ELONGATED HYPOCOTYL regulates photoperiodic flowering via the circadian clock in Arabidopsis
Creators: name: Park, Mi-Jeong
name: Kwon, Young-Ju
name: Kyung-Eun Gil
name: Chung-Mo Park
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Plant Biology
subject: Computational Biology

description: EMSA on binding of MBP and MBP-CCA1 proteins to conserved sequences in FT locus. Recombinant MBP and MBP-CCA1 fusion proteins were prepared as described in Additional file 5. Radio-labelled CCA1-binding sequence (CBS) and evening element (EE) DNA fragments, which were described in Fig.Â 4a, were used. A. EMSA on MBP binding to DNA fragments. (+) and (â  ) indicate assays with or without MBP protein. Note that MBP alone does not bind to the CBS and EE sequences. B. EMSA on MBP-CCA1 binding to DNA fragments. The core sequences of CBS and EE were mutated, resulting in mCBS and mEE, respectively. Excess amounts (50X, 100X) of unlabeled DNA fragments were added as competitors. (PDF 182 kb)
Additional file 3: of Description of the interaction between Candida albicans and macrophages by mixed and quantitative proteome analysis without isolation
Creators: name: Kitahara, Nao
name: Morisaka, Hironobu
name: Aoki, Wataru
name: Takeda, Yumiko
name: Shibasaki, Seiji
name: Kuroda, Kouichi
name: Ueda, Mitsuyoshi
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Inorganic Chemistry

description: Evaluation of protein quantification; The standard sample was combined at a ratio of 0.5:1:2 by volume. After labeling with TMT reagents, the three samples were mixed in a single tube and injected into nonoLCâ  MS/MS. Relative intensity of reporter ion ratios were obtained by dividing the intensity of reporter ions from the 0.5-sample and the 2-sample by that from the 1-sample.
ATMOSPHERIX: III- Estimating the C/O ratio and molecular dynamics at the limbs of WASP-76 b with SPIRou
Creators: name: Hood, Thea
name: Debras, Florian
name: Moutou, Claire
name: Klein, Baptiste
name: Tremblin, Pascal
name: Parmentier, Vivien
name: Carmona, Andres
name: Meech, Annabella
name: Vénot, Olivia
name: Masson, Adrien
name: Petit, Pascal
name: Vinatier, Sandrine
name: Martioli, Eder
name: Kiefer, Flavien
name: Turbet, Martin
name: consortium, the ATMOSPHERIX
Publisher: name: arXiv
Year: 2024
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: Measuring the abundances of C- and O-bearing species in exoplanet atmospheres enables us to constrain the C/O ratio, that contains indications about the planet formation history. With a wavelength coverage going from 0.95 to 2.5 microns, the high-resolution (R$\sim$70 000) spectropolarimeter SPIRou can detect spectral lines of major bearers of C and O in exoplanets. Here we present our study of SPIRou transmission spectra of WASP-76 b acquired for the ATMOSPHERIX program. We applied the publicly available data analysis pipeline developed within the ATMOSPHERIX consortium, analysing the data using 1-D models created with the petitRADTRANS code, with and without a grey cloud deck. We report the detection of H$_2$O and CO at a Doppler shift of around -6 km.s$^{-1}$, consistent with previous observations of the planet. Finding a deep cloud deck to be favoured, we measured in mass mixing ratio (MMR) log(H$_2$O)$_{MMR}$ = -4.52 $\pm$ 0.77 and log(CO)$_{MMR}$ = -3.09 $\pm$ 1.05 consistent with a sub-solar metallicity to more than 1$σ$. We report 3$σ$ upper limits for the abundances of C$_2$H$_2$, HCN and OH. We estimated a C/O ratio of 0.94 $\pm$ 0.39 ($\sim$ 1.7 $\pm$ 0.7 x solar, with errors indicated corresponding to the 2$σ$ values) for the limbs of WASP-76 b at the pressures probed by SPIRou. We used 1-D ATMO forward models to verify the validity of our estimation. Comparing them to our abundance estimations of H$_2$O and CO, as well as our upper limits for C$_2$H$_2$, HCN and OH, we found that our results were consistent with a C/O ratio between 1 and 2 x solar, and hence with our C/O estimation. Finally, we found indications of asymmetry for both H$_2$O and CO when investigating the dynamics of their signatures, pointing to a complex scenario involving possibly both a temperature difference between limbs and clouds being behind the asymmetry this planet is best known for.
description: 20 pages, 19 figures, accepted for publication in A&A
Additional file 1: of Identification and characterization of two new 5-keto-4-deoxy-D-Glucarate Dehydratases/Decarboxylases
Creators: name: AndrĂŠ Pick
name: Beer, Barbara
name: Hemmi, Risa
name: Momma, Rena
name: Schmid, Jochen
name: Miyamoto, Kenji
name: Sieber, Volker
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 60506 Virology

description: Codon optimized nucleotide sequences for three kdgD genes coding for the keto-deoxy glucarate dehydratases/decarboxylases (EC 4.2.1.41) from A. baylyi ADP1 (Figure S1), C. testosteroni KF-1 (Figure S2), P. naphthalenivorans (Figure S3). (DOCX 34 kb)
Fuscozetes fuscipes
Creators: name: Weigmann, G.
name: Miko, L.
Publisher: name: Goecke & Evers
Year: 2006
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Sarcoptiformes
Ceratozetidae
Fuscozetes
Fuscozetes fuscipes

description: Fuscozetes fuscipes (C. L. Koch,1844) [209e,f]
Syn., Tax.: Oribates fuscipes C. L. Koch, 1844 (CMA 38.9). Sphaerozetes (Trichoribates) f.: Willmann 1923. Fuscozetes f.: Sellnick 1928; Willmann 1931 (B); Ghilarov & Krivoluckij 1975 (B); Seniczak 1989b (B); Seniczak et al. 1990a (B).
Ökologie: In feuchten bis nassen Wiesen, Röhrichten und Wäldern.
Verbreitung: Holarktis.
description: Published as part of Weigmann, G. & Miko, L., 2006, Hornmilben (Oribatida) [pages 323 to 417], pp. 323-417 in Hornmilben (Oribatida) [Dahl, Tierwelt Deutschlands, Teil 76], Keltern :Goecke & Evers on page 391
SEC14-GOLD protein PATELLIN2 binds IRON-REGULATED TRANSPORTER1 linking root iron uptake to vitamin E
Creators: name: Hornbergs, Jannik
name: Montag, Karolin
name: Loschwitz, Jennifer
name: Mohr, Inga
name: Poschmann, Gereon
name: Schnake, Anika
name: Gratz, Regina
name: Brumbarova, Tzvetina
name: Eutebach, Monique
name: Angrand, Kalina
name: Fink-Straube, Claudia
name: Stühler, Kai
name: Zeier, Jürgen
name: Hartmann, Laura
name: Strodel, Birgit
name: Ivanov, Rumen
name: Bauer, Petra
Publisher: name: Oxford : Oxford University Press
Year: 2023
Subjects: subject: alpha-Tocopherol
subject: Arabidopsis
subject: Arabidopsis Proteins
subject: Biological Transport
subject: Gene Expression Regulation, Plant
subject: Plant Roots
subject: Vitamin E
subject: alpha tocopherol
subject: Arabidopsis protein
subject: gene expression regulation
subject: genetics
subject: metabolism
subject: plant root
subject: transport at the cellular level
subject: 580

description: Organisms require micronutrients, and Arabidopsis (Arabidopsis thaliana) IRON-REGULATED TRANSPORTER1 (IRT1) is essential for iron (Fe2+) acquisition into root cells. Uptake of reactive Fe2+ exposes cells to the risk of membrane lipid peroxidation. Surprisingly little is known about how this is avoided. IRT1 activity is controlled by an intracellular variable region (IRT1vr) that acts as a regulatory protein interaction platform. Here, we describe that IRT1vr interacted with peripheral plasma membrane SEC14-Golgi dynamics (SEC14-GOLD) protein PATELLIN2 (PATL2). SEC14 proteins bind lipophilic substrates and transport or present them at the membrane. To date, no direct roles have been attributed to SEC14 proteins in Fe import. PATL2 affected root Fe acquisition responses, interacted with ROS response proteins in roots, and alleviated root lipid peroxidation. PATL2 had high affinity in vitro for the major lipophilic antioxidant vitamin E compound α-tocopherol. Molecular dynamics simulations provided insight into energetic constraints and the orientation and stability of the PATL2-ligand interaction in atomic detail. Hence, this work highlights a compelling mechanism connecting vitamin E with root metal ion transport at the plasma membrane with the participation of an IRT1-interacting and α-tocopherol-binding SEC14 protein.
Additional file 3: Table S2. of Genome-wide analysis and expression profiling of the PIN auxin transporter gene family in soybean (Glycine max)
Creators: name: Yongqin Wang
name: Chenglin Chai
name: Valliyodan, Babu
name: Maupin, Christine
name: Annen, Brad
name: Nguyen, Henry
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Plant Biology

description: Protein sequences used in the phylogenetic analysis. (PDF 82 kb)
Fuscozetes setosus
Creators: name: Weigmann, G.
name: Miko, L.
Publisher: name: Goecke & Evers
Year: 2006
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Sarcoptiformes
Ceratozetidae
Fuscozetes
Fuscozetes setosus

description: Fuscozetes setosus (C. L. Koch, 1839) [209d]
Syn., Tax.: Oribates setosus C. L. Koch, 1839 (CMA 39.19). Fuscozetes s.: Sellnick 1928; Willmann 1928b (B), 1931 (B); Ghilarov & Krivoluckij 1975 (B); Seniczak 1989b (B); Seniczak et al. 1990a (B).
Ökologie: In Torf- und Rohhumusböden, Moore, Heiden und Wälder.
Verbreitung: Holarktis.
description: Published as part of Weigmann, G. & Miko, L., 2006, Hornmilben (Oribatida) [pages 323 to 417], pp. 323-417 in Hornmilben (Oribatida) [Dahl, Tierwelt Deutschlands, Teil 76], Keltern :Goecke & Evers on page 391
Corporate performances in space : situating fraud in the Enron case
Creators: name: Walenta, Jayme
Publisher: name: University of British Columbia
Year: 2009

description: This thesis concerns the collapse of Houston based Enron Corporation and its ongoing economic, political and legal implications. Specifically, I investigate spaces of corporate fraud to broadly ask, how is fraud located in the varied spatial contexts of the firm? My goal is to demonstrate that the corporation is contingent upon social, cultural and material relationships across space. In this regard, I explore three distinct corporate spaces. They include (1) financial statements, where I discuss Enron’s financial performances in two spatial contexts, what the public saw, and what went on in private, (2) the bodies of workers, where I consider the gendered exposure of Enron’s fraud to the public, and (3) the spaces of the courtroom where I document how the corporation, as a non-bodied entity, became embodied in a courtroom context. In each case, I demonstrate how fraud is situated differently, and in each case, I suggest the implications of corporate fraud play out with differing results for those involved. The research for this thesis involved an archeological and ethnographic approach towards gathering and analyzing narratives around Enron’s downfall. This means I rely on financial documents and other important papers published by the former company, semi-structured interviews with former Enron employees, interviews with key media persons documenting the Enron story, participant-observation of the criminal trial against former CEOs (Chief Executive Officer) Ken Lay and Jeff Skilling, media analysis of news articles and other popular culture texts, and finally, journaling. Far from being solely a homo economicus, a rational economic actor guided by capitalist imperatives to extract profit, my data suggests that the corporation is constituted through cultural, social and material agents that are unstable and breakdown. With this, I suggest the use of a new metaphor for the corporation, the corporation as a body. The body I conceive is conceptually drawn from feminist post-structural theory. It is open, porous and embodied. This new metaphor enables me to draw on the corporation’s diverse embodiments as important constitutive moments of corporate fraud.
More on Black Holes Perceiving the Dark Dimension
Creators: name: Anchordoqui, Luis A.
name: Antoniadis, Ignatios
name: Lust, Dieter
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: In the last two years the dark dimension scenario has emerged as focal point of many research interests. In particular, it functions as a stepping stone to address the cosmological hierarchy problem and provides a colosseum for dark matter contenders. We reexamine the possibility that primordial black holes (PBHs) perceiving the dark dimension could constitute all of the dark matter in the universe. We re-assess limits on the abundance of PBHs as dark matter candidates from $γ$-ray emission resulting from Hawking evaporation. We re-evaluate constraints from the diffuse $γ$-ray emission in the direction of the Galactic center which offer the best and most solid upper limits on the dark matter fraction composed of PBHs. The revised mass range which allows PBHs to assemble all cosmological dark matter is estimated to be $10^{15} \alt M_{\rm BH}/{\rm g} \alt 10^{21}$. We demonstrate that due to the constraints from $γ$-ray emission, quantum corrections due to the speculative memory burden effect do not modify this mass range. We also investigate the main characteristics of PBHs which are localized in the bulk. We show that PBHs localized in the bulk can make all cosmological dark matter if $10^{11} \alt M_{\rm BH}/{\rm g} \alt 10^{21}$. Finally, we comment on the black holes that could be produced if one advocates a space with two boundaries for the dark dimension.
description: Matching version to be published in PRD
MOESM1 of Assessing pretreatment reactor scaling through empirical analysis
Creators: name: Lischeske, James
name: Crawford, Nathan
name: Kuhn, Erik
name: Nagle, Nicholas
name: Schell, Daniel
name: Tucker, Melvin
name: McMillan, James
name: Wolfrum, Edward
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Plant Biology
subject: Computational Biology

description: Additional file 1. Assessing pretreatment reactor scaling through empirical analysis.
title: Feministische Außenpolitik zwischen Anspruch und Wirklichkeit
Creators: name: Domres, Sophie
Publisher: name: DuEPublico
Year: 2024
Subjects: classificationCode: 5
subject: FOS: Social sciences
classificationCode: 5.6
subject: FOS: Political science

description: Feministische Außenpolitik (FFP) hat in den letzten Jahren an Bedeutung gewonnen, da sie traditionelle außenpolitische Paradigmen in Frage stellt und eine gerechtere Weltordnung fordert. Die Ideale der FFP klingen vielversprechend: Geschlechtergerechtigkeit, Menschenrechte, Empathie und soziale Gerechtigkeit stehen im Mittelpunkt. Doch wie sieht die Realität der Umsetzung aus und welche Herausforderungen stehen dem entgegen?
Melanozetes
Creators: name: Weigmann, G.
name: Miko, L.
Publisher: name: Goecke & Evers
Year: 2006
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Sarcoptiformes
Ceratozetidae
Melanozetes

description: Melanozetes Hull, 1916
Typ: Oribates mollicomus C. L. Koch, 1839. - Syn: Alphypochthonius Schweizer, 1956 (Nymphen)
1. Lamellen nur wenig konvergierend, bei den Cuspides kaum schmaler als Prodorsum; Tutorium vorn mit breitem Zahn, der etwa bis zur Rostralborste reicht. (+) Sensillus lang gestielt, seitwärts gerichtet, Kopf eine kurze Keule; Rostrum vorn ganzrandig; 14 Paar lang wirkende Notogasterborsten (bis um 100 µm lang), jeweils in kleinen Vertiefungen eingelenkt; Interlamellarborsten um 90 µm, Lamellarborsten um 45 µm, Rostralborsten um 50 µm, Exobothridialborsten 40-50 µm; Körperlänge 460-590 µm. [210f-h] ........................................................................ Melanozetes mollicomus (C. L. Koch, 1839)
- Lamellen mit Cuspides deutlich konvergierend und viel schmaler als Prodorsum; Tutorium vorn ohne Zahn oder dieser nur als kleine Ecke geformt, weit von Rostralborste entfernt ..................................................................2
2. (1) Raum zwischen den Cuspides breiter als Basisbreite der Cuspides; Sensillus aufrecht stehend, langgestreckt keulen- bis spindelförmig, bis um 60 µm lang. (+) Rostrum vorn ganzrandig, höchstens schwach ausgebuchtet; 14 Paar Notogasterborsten nicht in kleinen Vertiefungen eingelenkt, Länge variabel (max. 70-100 µm); mäßig lange Prodorsumborsten, Interlamellarborsten bis um 100 µm, Lamellar- und Rostralborsten bis 70 µm, Exobothridialborsten 40-55 µm; Körperlänge 525-635µm. [210c-e] ..................................................................... Melanozetes meridianus Sellnick, 1928
- Raum zwischen den Cuspides nicht breiter als Basisbreite der Cuspides; Sensillus lang gestielt, seitwärts gebogen, Kopf eine schlanke Keule. (+) Rostrum vorn ganzrandig; 14 Paar Notogasterborsten nicht in kleinen Vertiefungen eingelenkt; relativ lange Prodorsumborsten, Interlamellarborsten um 145 µm, Lamellarborsten um 115 µm, Rostralborsten um 95 µm, Exobothridialborsten bis 70 µm; Körperlänge 710-810 µm. [210a,b] .................................................. Melanozetes interruptus Willmann, 1953
description: Published as part of Weigmann, G. & Miko, L., 2006, Hornmilben (Oribatida) [pages 323 to 417], pp. 323-417 in Hornmilben (Oribatida) [Dahl, Tierwelt Deutschlands, Teil 76], Keltern :Goecke & Evers on page 393
Additional file 5: Table S4. of Genome-wide analysis and expression profiling of the PIN auxin transporter gene family in soybean (Glycine max)
Creators: name: Yongqin Wang
name: Chenglin Chai
name: Valliyodan, Babu
name: Maupin, Christine
name: Annen, Brad
name: Nguyen, Henry
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Hematology
subject: Plant Biology

description: Primers used for GmPINs gene promoter cloning. (PDF 60 kb)
Fuscozetes tatricus Seniczak
Creators: name: Weigmann, G.
name: Miko, L.
Publisher: name: Goecke & Evers
Year: 2006
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Sarcoptiformes
Ceratozetidae
Fuscozetes
Fuscozetes tatricus

description: Fuscozetes tatricus Seniczak, 1993
Syn., Tax.: Seniczak 1993d.
Ökologie: Hoch-montane und alpine Rasen und Moospolster, weniger in der Baumzone.
Verbreitung: Tatra, Österreichische Alpen.
description: Published as part of Weigmann, G. & Miko, L., 2006, Hornmilben (Oribatida) [pages 323 to 417], pp. 323-417 in Hornmilben (Oribatida) [Dahl, Tierwelt Deutschlands, Teil 76], Keltern :Goecke & Evers on page 391
Melanozetes interruptus
Creators: name: Weigmann, G.
name: Miko, L.
Publisher: name: Goecke & Evers
Year: 2006
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Sarcoptiformes
Ceratozetidae
Melanozetes
Melanozetes interruptus

description: Melanozetes interruptus Willmann, 1953 [210a,b]
Syn., Tax.: Willmann 1953. Schweizer 1956 (B); Sellnick 1960; Ghilarov & Krivoluckij 1975 (B); Seniczak 1993a (B).
-? M. longesensillus Schweizer, 1956.
Ökologie: Alpine und subalpine Rasen und Moospolster.
Verbreitung: Paläarktis (Alpen, Sibirien; bisher nicht in Deutschland).
description: Published as part of Weigmann, G. & Miko, L., 2006, Hornmilben (Oribatida) [pages 323 to 417], pp. 323-417 in Hornmilben (Oribatida) [Dahl, Tierwelt Deutschlands, Teil 76], Keltern :Goecke & Evers on page 393
Immunoglobulin G/immunoglobulin M autoantibody ratios in incomplete systemic lupus erythematosus
Creators: name: Henning, S
name: Westra, J
name: Roozendaal, C
name: Boer, G Haarsma-de
name: Fierro, JJ
name: Horvath, B
name: Bootsma, H
name: de Leeuw, K
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Cell Biology
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Virology

description: Immunoglobulin G (IgG) autoantibodies in systemic lupus erythematosus (SLE) are considered pathogenic, whereas immunoglobulin M (IgM) autoantibodies may have protective effects. The aim of this study was to identify whether IgG/IgM autoantibody ratios differ between patients with incomplete systemic lupus erythematosus (iSLE), patients with SLE, and healthy controls (HCs), and whether IgG/IgM autoantibody ratios relate to progression from iSLE to SLE. This prospective cohort study included 34 iSLE patients, 41 SLE patients, and 11 HCs. IgG and IgM anti-dsDNA, anti-Ro52, and anti-Ro60 were measured by fluoro-enzyme immunoassay in serum samples obtained at baseline in all groups and in follow-up samples of up to 5 years for iSLE patients. Correlations between IgG/IgM autoantibody ratios, interferon signature, and clinical parameters were also assessed. At baseline, IgG anti-dsDNA, anti-Ro52, anti-Ro60, and IgM anti-dsDNA were elevated in iSLE and SLE patients. IgG/IgM anti-dsDNA and anti-Ro52 ratios were similar between groups, while IgG/IgM anti-Ro60 ratios were significantly elevated in iSLE and SLE patients compared to HCs. IgG/IgM autoantibody ratios were not correlated with interferon signature or clinical parameters. IgG/IgM ratios at baseline were similar and remained relatively stable during a median follow-up of 18 months in non-progressors and six iSLE patients who progressed to SLE. IgG anti-dsDNA, anti-Ro52, anti-Ro60, and IgM anti-dsDNA were elevated in iSLE and SLE patients, which was not apparent from the respective IgG/IgM ratios only. IgG/IgM autoantibody ratios remained relatively stable over up to 5 years in iSLE non-progressors and six patients who progressed to SLE.
Modern Physics for Engineers Lecture slides 18b – Entropy and heat flow
Creators: name: Miller, David
Publisher: name: Stanford Digital Repository
Year: 2025
Subjects: Statistical mechanics
Second law of thermodynamics
Entropy
Temperature

description: This lecture part describes how the flow of heat from hotter to colder bodies leads to an increase in entropy overall, with the entropy of the hotter body decreasing but the entropy of the cooler body increasing by more. A numerical example is given to show just how enormously unlikely it is that even a small amount of heat would instead flow from cold to hot. In turn, this justifies the second law of thermodynamics. (slides)
Computationally and Memory-Efficient Robust Predictive Analytics Using Big Data
Creators: name: Menges, Daniel
name: Rasheed, Adil
Publisher: name: arXiv
Year: 2024
Subjects: subject: Machine Learning (cs.LG)
subject: Artificial Intelligence (cs.AI)
subject: Image and Video Processing (eess.IV)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: In the current data-intensive era, big data has become a significant asset for Artificial Intelligence (AI), serving as a foundation for developing data-driven models and providing insight into various unknown fields. This study navigates through the challenges of data uncertainties, storage limitations, and predictive data-driven modeling using big data. We utilize Robust Principal Component Analysis (RPCA) for effective noise reduction and outlier elimination, and Optimal Sensor Placement (OSP) for efficient data compression and storage. The proposed OSP technique enables data compression without substantial information loss while simultaneously reducing storage needs. While RPCA offers an enhanced alternative to traditional Principal Component Analysis (PCA) for high-dimensional data management, the scope of this work extends its utilization, focusing on robust, data-driven modeling applicable to huge data sets in real-time. For that purpose, Long Short-Term Memory (LSTM) networks, a type of recurrent neural network, are applied to model and predict data based on a low-dimensional subset obtained from OSP, leading to a crucial acceleration of the training phase. LSTMs are feasible for capturing long-term dependencies in time series data, making them particularly suited for predicting the future states of physical systems on historical data. All the presented algorithms are not only theorized but also simulated and validated using real thermal imaging data mapping a ship's engine.
A Photoreceptor-Based Hydrogel with Red Light-Responsive Reversible Sol-Gel Transition as Transient Cellular Matrix
Creators: name: Hörner, Maximilian
name: Becker, Jan
name: Bohnert, Rebecca
name: Baños, Miguel
name: Jerez‐Longres, Carolina
name: Mühlhäuser, Vanessa
name: Härrer, Daniel
name: Wong, Tin Wang
name: Meier, Matthias
name: Weber, Wilfried
Publisher: name: Weinheim : Wiley
Year: 2023
Subjects: subject: cell deposition
subject: cellular matrix
subject: hydrogels
subject: materials
subject: microfluidics
subject: optogenetics
subject: 600

description: Hydrogels with adjustable mechanical properties have been engineered as matrices for mammalian cells and allow the dynamic, mechano-responsive manipulation of cell fate and function. Recent research yields hydrogels, where biological photoreceptors translated optical signals into a reversible and adjustable change in hydrogel mechanics. While their initial application provides important insights into mechanobiology, broader implementation is limited by a small dynamic range of addressable stiffness. Herein, this limitation is overcome by developing a photoreceptor-based hydrogel with reversibly adjustable stiffness from ≈800 Pa to the sol state. The hydrogel is based on star-shaped polyethylene glycol, functionalized with the red/far-red light photoreceptor phytochrome B (PhyB), or phytochrome-interacting factor 6 (PIF6). Upon illumination with red light, PhyB heterodimerizes with PIF6, thus crosslinking the polymers and resulting in gelation. However, upon illumination with far-red light, the proteins dissociate and trigger a complete gel-to-sol transition. The hydrogel's light-responsive mechanical properties are comprehensively characterized and it is applied as a reversible extracellular matrix for the spatiotemporally controlled deposition of mammalian cells within a microfluidic chip. It is anticipated that this technology will open new avenues for the site- and time-specific positioning of cells and will contribute to overcome spatial restrictions.
Construct validity of Bath Ankylosing Spondylitis Disease Activity Index (BASDAI) and Ankylosing Spondylitis Disease Activity Score (ASDAS) treatment target cut-offs in a BASDAI treat-to-target axial spondyloarthritis cohort: a cross-sectional study
Creators: name: Michielsens, CAJ
name: Bolhuis, TE
name: van Gaalen, FA
name: van den Hoogen, FHJ
name: Verhoef, LM
name: Broeder, N den
name: Broeder, AA den
Publisher: name: Taylor & Francis
Year: 2023
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: In axial spondyloarthritis (axSpA), the Bath Ankylosing Spondylitis Disease Activity Index (BASDAI) and Ankylosing Spondylitis Disease Activity Score (ASDAS) are recommended for use in treat-to-target (T2T) strategies. However, BASDAI disease states may be a less suitable T2T instrument than ASDAS, since BASDAI contains non-disease activity related items. The objective of our study was to investigate the construct validity of BASDAI and ASDAS disease states. We performed a single-centre cross-sectional study on BASDAI and ASDAS construct validity in long-term BASDAI T2T-treated axSpA patients. Our hypothesis was that BASDAI is less representative of disease activity than ASDAS owing to the focus on pain and fatigue, and missing an objective item, e.g. C-reactive protein (CRP). This was operationalized using several subhypotheses. The study included 242 axSpA patients. BASDAI and ASDAS disease states showed a similar relation to Patient Acceptable Symptom State and T2T protocol adherence. The proportions of patients with high BASDAI and ASDAS disease activity fulfilling Central Sensitization Inventory and fibromyalgia syndrome criteria were similar. The correlation with fatigue was moderate for both BASDAI (Spearman’s rho 0.64) and ASDAS (Spearman’s rho 0.54) disease states. A high ASDAS was strongly correlated with increased CRP (relative risk 6.02, 95% CI 3.0–12.09), while this correlation was not seen for BASDAI (relative risk 1.13, 95% CI 0.74–1.74). Our study showed moderate and comparable construct validity for BASDAI- and ASDAS-based disease activity states, with the expected exception of association with CRP. Therefore, no strong preference can be given for either measure, although the ASDAS seems marginally more valid.
Melanozetes meridianus Sellnick
Creators: name: Weigmann, G.
name: Miko, L.
Publisher: name: Goecke & Evers
Year: 2006
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Sarcoptiformes
Ceratozetidae
Melanozetes
Melanozetes meridianus

description: Melanozetes meridianus Sellnick, 1928 [210c-e]
Syn., Tax.: Sellnick 1928. Willmann 1931 (B); Sellnick 1960; Ghilarov & Krivoluckij 1975 (B); Seniczak 1989a (B); Seniczak et al. 1990a (B).
? M. m. in Behan-Pelletier 1986: die nearktischen Tiere haben einen Rostralausschnitt und deutliche, kleine Tutoriumzähne; vermutlich eine andere Art.
Ökologie: Quellmoose, Moore, feuchte Moose und Waldstreu, hochalpine Grasheiden.
Verbreitung: Holarktis.
description: Published as part of Weigmann, G. & Miko, L., 2006, Hornmilben (Oribatida) [pages 323 to 417], pp. 323-417 in Hornmilben (Oribatida) [Dahl, Tierwelt Deutschlands, Teil 76], Keltern :Goecke & Evers on page 393