cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Reduction of oscillator dynamics on complex networks to dynamics on complete graphs through virtual frequencies
Creators: name: Gao, Jian
name: Efstathiou, Konstantinos
Publisher: name: arXiv
Year: 2019
Subjects: subject: Adaptation and Self-Organizing Systems (nlin.AO)
subject: FOS: Physical sciences

description: We consider the synchronization of oscillators in complex networks where there is an interplay between the oscillator dynamics and the network topology. Through a remarkable transformation in parameter space and the introduction of virtual frequencies we show that Kuramoto oscillators on annealed networks, with or without frequency-degree correlation, and Kuramoto oscillators on complete graphs with frequency-weighted coupling can be transformed to Kuramoto oscillators on complete graphs with a re-arranged, virtual frequency distribution, and uniform coupling. The virtual frequency distribution encodes both the natural frequency distribution (dynamics) and the degree distribution (topology). We apply this transformation to give direct explanations to a variety of phenomena that have been observed in complex networks, such as explosive synchronization and vanishing synchronization onset.
description: 6 pages, 3 figures
title: ADCO, Cartulaire de l'office de la Porte de l'abbaye de Cîteaux, Registrum possessionum porte Cistercii (début XVe siècle), Cart. 172 (11 H 69), 115 folios, f. 0250
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi

description: Cartulaire de l'office de la Porte de l'abbaye de Cîteaux, Registrum possessionum porte Cistercii (début XVe siècle), Archives départementales de la Côte-d'Or, Cart. 172 (11 H 69), 115 folios, f. 0250, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de l'office de la Porte de l'abbaye de Cîteaux, Registrum possessionum porte Cistercii (début XVe siècle), Archives départementales de la Côte-d'Or, Cart. 172 (11 H 69), 115 folios, f. 0250, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
A discrete time peakons lattice
Creators: name: Suris, Yuri B.
Publisher: name: arXiv
Year: 1995
Subjects: subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: FOS: Physical sciences

description: A discretization of the peakons lattice is introduced, belonging to the same hierarchy as the continuous--time system. The construction examplifies the general scheme for integrable discretization of systems on Lie algebras with $r$--matrix Poisson brackets. An initial value problem for the difference equations is solved in terms of a factorization problem in a group. Interpolating Hamiltonian flow is found. A variational (Lagrangian) formulation is also given.
description: 14 pages, LaTeX
Black hole and neutron star mergers in galactic nuclei
Creators: name: Fragione, Giacomo
name: Grishin, Evgeni
name: Leigh, Nathan W. C.
name: Perets, Hagai. B.
name: Perna, Rosalba
Publisher: name: arXiv
Year: 2018
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Nuclear star clusters surrounding supermassive black holes (SMBHs) in galactic nuclei contain large numbers of stars, black holes (BHs) and neutron stars (NSs), a fraction of which are likely to form binaries. These binaries were suggested to form a triple system with the SMBH, which acts as a perturber and may enhance BH and NS mergers via the Lidov-Kozai mechanism. We follow-up previous studies, but for the first time perform an extensive statistical study of BH-BH, NS-NS and BH-NS binary mergers by means of direct high-precision regularized $N$-body simulations, including Post-Newtonian (PN) terms up to order PN2.5. We consider different SMBH masses, slopes for the BH mass function, binary semi-major axis and eccentricity distributions, and different spatial distributions for the binaries. We find that the merger rates are a decreasing function of the SMBH mass and are in the ranges $\sim 0.17$-$0.52 \ \mathrm{Gpc}^{-3}\ \mathrm{yr}^{-1}$, $\sim 0.06$-$0.10 \ \mathrm{Gpc}^{-3}\ \mathrm{yr}^{-1}$ and $\sim 0.04$-$0.16 \ \mathrm{Gpc}^{-3}\ \mathrm{yr}^{-1}$ for BH-BH, BH-NS and NS-NS binaries, respectively. However, the rate estimate from this channel remains highly uncertain and depends on the specific assumptions regarding the star-formation history in galactic nuclei and the supply rate of compact objects. We find that $\sim 10\%$--$20\%$ of the mergers enter the LIGO band with eccentricities $\gtrsim 0.1$. We also compare our results to the secular approximation, and show that $N$-body simulations generally predict a larger number of mergers. Finally, these events can also be observable via their electromagnetic counterparts, thus making these compact object mergers especially valuable for cosmological and astrophysical purposes.
description: 19 pages, 8 figures, 5 Tables, accepted by MNRAS
Efficacy of lenalidomide as salvage therapy for patients with AL amyloidosis
Creators: name: Kastritis, Efstathios
name: Gavriatopoulou, Maria
name: Roussou, Maria
name: Bagratuni, Tina
name: Migkou, Magdalini
name: Fotiou, Despina
name: Ziogas, Dimitrios C.
name: Kanellias, Nikolaos
name: Eleutherakis-Papaiakovou, Evangelos
name: Dialoupi, Ioanna
name: Ntanasis-Stathopoulos, Ioannis
name: Mairylin Spyropoulou-Vlachou
name: Psimenou, Erasmia
name: Gakiopoulou, Harikleia
name: Smaragdi Marinaki
name: Papadopoulou, Elektra
name: Ntalianis, Argyrios
name: Terpos, Evangelos
name: Dimopoulos, Meletios A.
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: Marine Biology
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: We retrospectively evaluated 55 consecutive patients who received at least one dose of lenalidomide for relapsed/refractory AL amyloidosis. Their median age was 63 years; 72% had heart and 75% kidney involvement and 13% were on dialysis; while 20%, 46% and 34% had Mayo stage -1, -2 and -3 disease, respectively. Median time from start of primary therapy to lenalidomide was 15 months (range 2–100) and median number of prior therapies was 1 (range 1–4); 73% of the patients had prior bortezomib and 42% were bortezomib-refractory. On intent to treat, haematologic response rate was 51% (5.5% CRs, 20% VGPRs) and was 56% versus 40% for patients with and without prior bortezomib and 47% versus 62.5% for bortezomib refractory versus non-refractory patients (p = .351). Organ response was achieved by 16% of evaluable patients (22% renal, 7% liver and 3% cardiac); however, 10 (21%) patients progressed to dialysis. Median survival post lenalidomide was 25 months. Bortezomib-refractory patients had worse outcome (median survival of 10.5 versus 25 months for bortezomib-sensitive patients versus not reached for bortezomib-naive patients, p = .011). Median lenalidomide dose was 10 mg and no patient received the 25 mg dose; however, in 60% a dose reduction was required. Median duration of lenalidomide therapy was 7.2 months and 46% discontinued lenalidomide before completion of planned therapy, mainly due to toxicity (26%) or disease progression/no response (13%). We conclude that although lenalidomide is a major salvage option for patients with relapsed/refractory AL amyloidosis, its toxicity in patients with AL amyloidosis is significant and doses should be adjusted for optimal tolerability.
Additional file 5 of Adapting and validating the log quadratic model to derive under-five age- and cause-specific mortality (U5ACSM): a preliminary analysis
Creators: name: Perin, Jamie
name: Chu, Yue
name: Villaviciencio, Francisco
name: Schumacher, Austin
name: McCormick, Tyler
name: Guillot, Michel
name: Liu, Li
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Computational Biology

description: Additional file 5. Sensitivity to birth cohorts in cross validation for analysis of all cause mortality.
title: ADCO, Cart. 186 (11 H 71), f. 0037v
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, t. II (XVe siècle), tome II, Archives départementales de la Côte-d'Or, C
art. 186 (11 H 71). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, t. II (XVe siècle), tome II, Archives départementales de la
 Côte-d'Or, Cart. 186 (11 H 71), f. 0037v, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-
project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Cosmology with a Primordial Scaling Field
Creators: name: Ferreira, Pedro G.
name: Joyce, Michael
Publisher: name: arXiv
Year: 1997
Subjects: subject: Astrophysics (astro-ph)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: A weakly coupled scalar field $Φ$ with a simple exponential potential $V=M_P^4\exp(-λΦ/M_P)$ where $M_P$ is the reduced Planck mass, and $λ> 2$, has an attractor solution in a radiation or matter dominated universe in which it mimics the scaling of the dominant component, contributing a fixed fraction $Ω_ϕ$ (determined by $λ$) to the energy density. Such fields arise generically in particle physics theories involving compactified dimensions, with values of $λ$ which give a cosmologically relevant $Ω_ϕ$. For natural initial conditions on the scalar field in the early universe the attractor solution is established long before the epoch of structure formation, and in contrast to the solutions used in other scalar field cosmologies, it is one which does not involve an energy scale for the scalar field characteristic of late times . We study in some detail the evolution of matter and radiation perturbations in a standard inflation-motivated $Ω=1$ dark-matter dominated cosmology with this extra field. Using a full Einstein-Boltzmann calculation we compare observable quantities with current data. We find that, for $Ω_ϕ\simeq 0.08-0.12$, these models are consistent with large angle cosmic microwave background anisotropies as detected by COBE, the linear mass variance as compiled from galaxy surveys, big bang nucleosynthesis, the abundance of rich clusters and constraints from the Lyman-$α$ systems at high redshift. Given the simplicity of the model, its theoretical motivation and its success in matching observations, we argue that it should be taken on a par with other currently viable models of structure formation.
description: 31 pages, uses RevTex, 19 figures, revised and accepted to Phys. Rev. D
Cloning and expression of α-amylase in E. coli: genesis of a superior biocatalyst for substrate-specific MFC
Creators: name: Nandy, Arpita
name: Jana, Samir
name: Moumita Khamrai
name: Vikash Kumar
name: Shritama Mukherjee
name: Arindam Bhattacharyya
name: Patit P. Kundu
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: One of the most practical approaches for establishing a successful microbial fuel cell (MFC) is to fasten the oxidation rate of the substrate by the microorganisms to get quick paced electron transfer between microbes and electrode. A genetically modified Escherichiacoli, overexpressing α-amylase, is constructed and applied as biocatalyst in MFC using starch as substrate. The results are compared with nonrecombinant, native E.coli. The results show better performance for the MFC containing the recombinant strain demonstrated by higher power density (PD), lower resistance, and significant electrochemical activity. Maximum PD has been recorded as 279.04 mW m−2 compared to 120.33 Mw m−2 for the MFC operated with nonrecombinant E.coli. The impedance results also suggest the effectiveness of the recombinant strain by lowering the internal resistance by more than half order as compared to the nonrecombinant one. These results affirm that the engineered strain can be used as a superior biocatalyst in contrast to the native strain and by using the technique of genetic alteration; gene of interest can be inserted based on the substrate to be treated. So, this work gives a useful insight for accomplishing successful MFC operation with the use of bacterial stains engineered at the molecular level.
Additional file 6 of Acceptability and feasibility of malaria prophylaxis for forest goers: findings from a qualitative study in Cambodia
Creators: name: Jongdeepaisal, Monnaphat
name: Ean, Mom
name: Heng, Chhoeun
name: Buntau, Thoek
name: Tripura, Rupam
name: Callery, James J.
name: Peto, Thomas J.
name: Conradis-Jansen, Franca
name: von Seidlein, Lorenz
name: Khonputsa, Panarasri
name: Pongsoipetch, Kulchada
name: Soviet, Ung
name: Sovannaroth, Siv
name: Pell, Christopher
name: Maude, Richard J.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Neuroscience
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 6. Policymaker IDI guide.
Emergence of a dominant unit in a network of chaotic units with delayed synaptic change
Creators: name: Ito, Junji
name: Ohira, Toru
Publisher: name: arXiv
Year: 2000
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: We study here a model of globally coupled units with adaptive interaction weights which has a delay in the updating rule. Simulations show that the model with such delayed synaptic change exhibits dynamical self-organization of network structure. With suitably chosen parameters, "dominant" unit emerges spontaneously, in the sense that the connection from such unit to almost all of the other units are especially strengthened. Such weight structure facilitates the coherent activity among units.
description: 4 pages, 5 figures, submitted to Physical Review Letters
Gastrointestinal stability of Dipeptidyl peptidase IV (DPP-IV)-inhibitory peptides identified in Tenebrio molitor
Creators: name: Berraquero-García, C.
name: García-Moreno, P.J.
name: Pérez-Gálvez, R.
name: Espejo-Carpio, F.J.
name: Guadix, E.M.
Publisher: name: Brill Online
Year: 2025
Subjects: classificationCode: 309999
subject: Other agricultural, veterinary and food sciences not elsewhere classified

description: The use of insects recently emerged as an alternative source of high-quality protein for the obtention of peptides with a wide range of bioactivities, such as antidiabetic, while offering a more environmentally sustainable approach. However, antidiabetic DPP-IV inhibitory peptides are often rich in leucine, making them susceptible to degradation by pepsin and chymotrypsin during gastrointestinal digestion. This study uses bioinformatic prediction and in vitro activity assays to identify DPP-IV inhibitory peptides within the Tenebrio molitor proteome and assess their bioavailability. Conducting homology analysis, three peptides ‒ ILAP, FLQP, and APVAH ‒ were identified as complete matches, but efficient release of the sequences through targeted hydrolysis remains a significant challenge. Notably, a substantial decline in the DDP-IV inhibitory activity was found for the peptide fragments generated after digestion, compared to the original parent peptides. The inhibitory mechanisms of all three peptides were examined, revealing that mixed inhibition was associated with enhanced activity. Insect-derived peptides, such as APVAH with an IC50 of 0.013 ± 0.001 mg peptide/mL, may serve as effective DPP-IV inhibitors for diabetes management. However, protecting these peptides from gastrointestinal proteases is essential due to observed activity loss in digested fragments.
Effects of boundary conditions on magnetization switching in kinetic Ising models of nanoscale ferromagnets
Creators: name: Richards, Howard L.
name: Kolesik, M.
name: Lindgard, Per-Anker
name: Rikvold, Per Arne
name: Novotny, M. A.
Publisher: name: arXiv
Year: 1996
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: Magnetization switching in highly anisotropic single-domain ferromagnets has been previously shown to be qualitatively described by the droplet theory of metastable decay and simulations of two-dimensional kinetic Ising systems with periodic boundary conditions. In this article we consider the effects of boundary conditions on the switching phenomena. A rich range of behaviors is predicted by droplet theory: the specific mechanism by which switching occurs depends on the structure of the boundary, the particle size, the temperature, and the strength of the applied field. The theory predicts the existence of a peak in the switching field as a function of system size in both systems with periodic boundary conditions and in systems with boundaries. The size of the peak is strongly dependent on the boundary effects. It is generally reduced by open boundary conditions, and in some cases it disappears if the boundaries are too favorable towards nucleation. However, we also demonstrate conditions under which the peak remains discernible. This peak arises as a purely dynamic effect and is not related to the possible existence of multiple domains. We illustrate the predictions of droplet theory by Monte Carlo simulations of two-dimensional Ising systems with various system shapes and boundary conditions.
description: RevTex, 48 pages, 13 figures
On sharp lower bounds for Calabi type functionals and destabilizing properties of gradient flows
Creators: name: Xia, Mingchen
Publisher: name: arXiv
Year: 2019
Subjects: subject: Differential Geometry (math.DG)
subject: Complex Variables (math.CV)
subject: FOS: Mathematics

description: Let $X$ be a compact Kähler manifold with a given ample line bundle $L$. In \cite{Don05}, Donaldson proved that the Calabi energy of a Kähler metric in $c_1(L)$ is bounded from below by the supremum of a normalized version of the minus Donaldson--Futaki invariants of test configurations of $(X,L)$. He also conjectured that the bound is sharp. In this paper, we prove a metric analogue of Donaldson's conjecture, we show that if we enlarge the space of test configurations to the space of geodesic rays in $\mathcal{E}^2$ and replace the Donaldson--Futaki invariant by the radial Mabuchi K-energy $\mathbf{M}$, then a similar bound holds and the bound is indeed sharp. Moreover, we construct explicitly a minimizer of $\mathbf{M}$. On a Fano manifold, a similar sharp bound for the Ricci--Calabi energy is also derived.
description: Final version. Statement of Theorem 4.1 corrected. To appear on Analysis & PDE
Bosons in a Lattice: Exciton-Phonon Condensate in Cu2O
Creators: name: Roubtsov, D.
name: Lepine, Y.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We explore a nonlinear field model to describe the interplay between the ability of excitons to be Bose-condensed and their interaction with other modes of a crystal. We apply our consideration to the long-living para-excitons in Cu2O. Taking into account the exciton-phonon interaction and introducing a coherent phonon part of the moving condensate, we derive the dynamic equations for the exciton-phonon condensate. These equations can support localized solutions, and we discuss the conditions for the moving inhomogeneous condensate to appear in the crystal. We calculate the condensate wave function and energy, and a collective excitation spectrum in the semiclassical approximation; the inside-excitations were found to follow the asymptotic behavior of the macroscopic wave function exactly. The stability conditions of the moving condensate are analyzed by use of Landau arguments, and Landau critical parameters appear in the theory. Finally, we apply our model to describe the recently observed interference and strong nonlinear interaction between two coherent exciton-phonon packets in Cu2O.
description: 34 pages, LaTeX, four figures (.ps) are incorporated by epsf. Submitted to Phys. Rev. B
title: Rimediare, performare, intermediare. Il corpo sonoro della scrittura
Creators: name: Santone, Laura
Publisher: name: Roma Tre University
publisherIdentifier: https://ror.org/05vf0dg29
publisherIdentifierScheme: ROR
Year: 2023

description: Partendo dalla nozione di testo quale medium visivo-sonoro in cui l’azione del verbo converge con  l’energia della lingua, i contributi raccolti in questo volume ripensano la scrittura come processo polifonico che coinvolge il corpo allo spettro di una dinamica intermediale e interestetica che ri-scrive, in-scrive e tra-scrive la “lettera” quale atto, gesto, materia di una mimesis generativa, di una performance in continua evoluzione che gioca su passaggi, ibridazioni, rotture, punti di  giunzione o disgiunzione tra significante e significato, tra voce e parola, tra spazio e tempo.
Spatial Variation of Nuclear Structure Functions and Heavy Quark Production
Creators: name: Emel'yanov, V.
name: Khodinov, A.
name: Klein, S. R.
name: Vogt, R.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Nuclear Theory (nucl-th)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We explore how nuclear modifications to the free nucleon structure functions (also known as shadowing) affect heavy quark production in collisions at different impact parameters. We assume that the nuclear modifications arise from a density dependent effect such as gluon recombination and are thus proportional to the local density. We calculate the dependence of charm and bottom quark production on impact parameter and show that density dependent modifications can lead to significant reductions in the heavy quark production cross sections in central relative to peripheral interactions.
description: 13 pages including 2 figures; submitted to Physical Review Letters
Additional file 2 of The genome of oil-Camellia and population genomics analysis provide insights into seed oil domestication
Creators: name: Lin, Ping
name: Wang, Kailiang
name: Wang, Yupeng
name: Hu, Zhikang
name: Yan, Chao
name: Huang, Hu
name: Ma, Xianjin
name: Cao, Yongqing
name: Long, Wei
name: Liu, Weixin
name: Li, Xinlei
name: Fan, Zhengqi
name: Li, Jiyuan
name: Ye, Ning
name: Ren, Huadong
name: Yao, Xiaohua
name: Yin, Hengfu
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 2 Fig. S1. The diploid progenitor C. oleifera “Nanyongensis” (CON) and the karyotyping of the CON plant. Fig. S2. The k-mer distribution of sequencing reads. Fig. S3. The strategy of the genome assembly based on multiple sequencing datasets. Fig. S4. Heatmap of Hi-C chromosomal interaction. Fig. S5. The SNP-based genetic map for C. oleifera using the ‘Changlin 53’ × ‘Changlin 81’ population. Fig. S6. Pearson correlation matrix for eight oil traits of C. oleifera population. Fig. S7. PCA plots of C. oleifera accessions. Fig. S8. LD levels among pairwise SNPs in seven subpopulations. Fig. S9. Genomic signatures of domestication detected by selective sweep analysis. Fig. S10. The relationship between co-expression module and ORTs in the oil-Camellia cultivar population. Fig. S11. The scatter plots for the expression profiles of eight key candidate genes by qRT-PCR analysis and RNA-seq results. Fig. S12. Combine QQ plots for eight oil traits of C. oleifera accessions.
Using pulsed mode scanning electron microscopy for cathodoluminescence studies on hybrid perovskite films
Creators: name: Ferrer Orri, Jordi
name: Tennyson, Elizabeth M
name: Kusch, Gunnar
name: Divitini, Giorgio
name: Macpherson, Stuart
name: Oliver, Rachel A
name: Ducati, Caterina
name: Stranks, Samuel D
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Paper
Focus on Cathodoluminescence and Electron Beam Induced Current of Semiconductor Nanostructures
hybrid perovskite
cathodoluminescence
pulsed mode
beam damage
hyperspectral mapping

description: Abstract: The use of pulsed mode scanning electron microscopy cathodoluminescence (CL) for both hyperspectral mapping and time-resolved measurements is found to be useful for the study of hybrid perovskite films, a class of ionic semiconductors that have been shown to be beam sensitive. A range of acquisition parameters is analysed, including beam current and beam mode (either continuous or pulsed operation), and their effect on the CL emission is discussed. Under optimized acquisition conditions, using a pulsed electron beam, the heterogeneity of the emission properties of hybrid perovskite films can be resolved via the acquisition of CL hyperspectral maps. These optimized parameters also enable the acquisition of time-resolved CL of polycrystalline films, showing significantly shorter lived charge carriers dynamics compared to the photoluminescence analogue, hinting at additional electron beam-specimen interactions to be further investigated. This work represents a promising step to investigate hybrid perovskite semiconductors at the nanoscale with CL.
Absence of Finite Temperature Phase Transitions in the X-Cube Model and its $\mathbb{Z}_{p}$ Generalization
Creators: name: Weinstein, Zack
name: Cobanera, Emilio
name: Ortiz, Gerardo
name: Nussinov, Zohar
Publisher: name: arXiv
Year: 2018
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We investigate thermal properties of the X-Cube model and its $\mathbb{Z}_{p}$ `clock-type' ($p$X-Cube) extension. In the latter, the elementary spin-1/2 operators of the X-Cube model are replaced by elements of the Weyl algebra. We study different boundary condition realizations of these models and analyze their finite temperature dynamics and thermodynamics. We find that (i) no finite temperature phase transitions occur in these systems. In tandem, employing bond-algebraic dualities, we show that for Glauber type solvable baths, (ii) thermal fluctuations might not enable system size dependent time autocorrelations at all positive temperatures (i.e., they are thermally fragile). Qualitatively, our results demonstrate that similar to Kitaev's Toric code model, the X-Cube model (and its $p$-state clock-type descendants) may be mapped to simple classical Ising ($p$-state clock) chains in which neither phase transitions nor anomalously slow glassy dynamics might appear.
description: 67 pages, 18 figures; v4: minor typos corrected
Top-bottom-tau Yukawa coupling unification in the MSSM+1VF and fermion masses as IR fixed points
Creators: name: Dermisek, Radovan
name: McGinnis, Navin
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: In the MSSM extended by a complete vectorlike family, precise top, bottom and tau Yukawa coupling unification can be achieved assuming SUSY threshold corrections which are typical for comparable superpartner masses. Furthermore, the unification is possible with a large unified coupling, implying that all three fermion masses can be simultaneously close to their IR fixed points. Assuming unified Yukawa couplings of order one or larger, the preferred common scale of new physics (superpartners and vectorlike matter) is in the 3 TeV to 30 TeV range, with larger couplings favoring smaller scales. Splitting superpartner masses from masses of vectorlike fields, the preferred scales extend in both directions. The multi-TeV scale for superpartners is compatible with and independently suggested by the Higgs boson mass.
description: v2: matches published version
Ab-initio theory of NMR chemical shifts in solids and liquids
Creators: name: Mauri, Francesco
name: Pfrommer, Bernd G.
name: Louie, Steven G.
Publisher: name: arXiv
Year: 1996
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We present a theory for the ab-initio computation of NMR chemical shifts (sigma) in condensed matter systems, using periodic boundary conditions. Our approach can be applied to periodic systems such as crystals, surfaces, or polymers and, with a super-cell technique, to non-periodic systems such as amorphous materials, liquids, or solids with defects. We have computed the hydrogen sigma for a set of free molecules, for an ionic crystal, LiH, and for a H-bonded crystal, HF, using density functional theory in the local density approximation. The results are in excellent agreement with experimental data.
description: to appear in Physical Review Letters
title: ADCO, Troisième cartulaire de Saint-Étienne de Dijon (XVIe), Cart. 23 (G 127), 310 folios, f. 00463
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2011
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire

description: Troisième cartulaire de Saint-Étienne de Dijon (XVIe), Archives départementales de la Côte-d'Or, Cart. 23 (G 127), 310 folios, f. 00463, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Troisième cartulaire de Saint-Étienne de Dijon (XVIe), Archives départementales de la Côte-d'Or, Cart. 23 (G 127), 310 folios, f. 00463, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
Four-dimensional Gravity on a Covariant Noncommutative Space
Creators: name: Manolakos, G.
name: Manousselis, P.
name: Zoupanos, G.
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We formulate a model of noncommutative four-dimensional gravity on a covariant fuzzy space based on SO(1,4), that is the fuzzy version of the $\text{dS}_4$. The latter requires the employment of a wider symmetry group, the SO(1,5), for reasons of covariance. Addressing along the lines of formulating four-dimensional gravity as a gauge theory of the Poincaré group, spontaneously broken to the Lorentz, we attempt to construct a four-dimensional gravitational model on the fuzzy de Sitter spacetime. In turn, first we consider the SO(1,4) subgroup of the SO(1,5) algebra, in which we were led to, as we want to gauge the isometry part of the full symmetry. Then, the construction of a gauge theory on such a noncommutative space directs us to use an extension of the gauge group, the SO(1,5)$\times$U(1), and fix its representation. Moreover, a 2-form dynamic gauge field is included in the theory for reasons of covariance of the transformation of the field strength tensor. Finally, the gauge theory is considered to be spontaneously broken to the Lorentz group with an extension of a U(1), i.e. SO(1,3)$\times$U(1). The latter defines the four-dimensional noncommutative gravity action which can lead to equations of motion, whereas the breaking induces the imposition of constraints that will lead to expressions relating the gauge fields. It should be noted that we use the euclidean signature for the formulation of the above programme.
Effects of van-Hove singularities on the upper critical field
Creators: name: Dias, R. G.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We present a study of the superconducting pairing susceptibility $K_T(r)$ for a two-dimensional isotropic system with a strong power-law divergence in the density of states $N(ε) \sim ε^{-1+\frac{1}{b}}$, $b>1$. We show that the pair propagator has the scaling form, $K_T(r)=r^{b-3} F(T^{1/b} r)$. An anomalous short-range behavior is found, leading straightforwardly to positive curvature in the upper critical field, for $b\lesssim 2$ and to a zero temperature divergence, $H_{c2} \sim T^{-2+\frac{4}{b}}$, for $b>2$.
description: 5 pages, 3 figures
Late Permian-Middle Triassic intermediate-acid intrusive rocks in the Eastern Kunlun Orogenic Belt, NW China: Petrogenesis and implications for geodynamic evolution
Creators: name: Li, Liang
name: Yan, Zhengping
name: Song, Zhaojun
name: Tan, Shucheng
name: Li, Xiaoliang
name: Xin, Wei
name: Tian, Nan
name: Wang, Guan
name: Wang, Chao
name: Li, Jinyu
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Biotechnology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Virology

description: Large areas of intermediate-acid intrusive rocks are widely exposed in the Eastern Kunlun Orogenic Belt (EKOB), which is an ideal place to study crustal reworking and growth and the tectonic setting and evolution of the Paleo-Tethys Ocean. Petrographic research shows that intermediate-acid intrusive rocks are mainly composed of diorite, diorite porphyry, granodiorite, and monzogranite, and their zircon U-Pb ages are 260.8 ± 1.5 Ma, 250.7 ± 1.8 Ma, 242.6 ± 0.7 Ma, 239.8 ± 1.2 Ma, 235.2 ± 0.9 Ma, and 230.2 ± 1.0 Ma. They are generally divided into granite, quartz monzonite and monzodiorite series in the QAP diagram. The granite series (HRGLG and LMR monzogranites and BLGX granodiorite) has high SiO2 contents and calc-alkaline features; it has low P2O5 and Zr+Nb+Ce+Y (75–267 ppm) contents, showing affinities to I-type granite, which reflects reworking of Mesoproterozoic lower crust. The quartz monzonite series (KEQK and DDKD diorites) has medium SiO2 and lower MgO contents (1.63–2.59 wt.%) than mantle-derived magmas and has crustal Nb/U and Ce/Pb ratios but mantle-like Nb/Ta ratios. Their geochemistry with binary properties related to both crust and mantle indicate that they probably originated from an AFC process involving mantle-derived melts and provide an important growth model of the continental crust in the EKOB. The monzodiorite series (BLGX diorite porphyry) has medium SiO2 and high MgO contents and Mg# values (59–61) and contains high-Mg diorites. They are enriched in LILEs and depleted in HFSEs; furthermore, strikingly high enrichments in Rb/Y ratios and Ba contents but a narrow range of Nb/Y ratios suggest that they originated from partial melting of hydrous mantle peridotites affected by fluids from the subducted slab. In conclusion, we suggest that the 261–235 Ma intermediate-acid intrusions represent the sustained subduction of the Paleo-Tethys Ocean slab and that the 230 Ma BLGX diorite porphyry records the breakoff of the Paleo-Tethys Ocean slab.
Nanobodies raised against monomeric ɑ-synuclein inhibit fibril formation and destabilize toxic oligomeric species
Creators: name: Klenerman, D
name: Iljina, M
name: Hong, L
name: Horrocks, Mathew
name: Ludtmann, MH
name: Choi, ML
name: Hughes, Craig
name: Ruggeri, Francesco
name: Guilliams, T
name: Buell, AK
name: Lee, Ji-Eun
name: Gandhi, S
name: Lee, Steven
name: Bryant, Clare
name: Vendruscolo, Michele
name: Knowles, Tuomas
name: Dobson, Christopher
name: De Genst, E
name: Klenerman, David
Publisher: name: Apollo - University of Cambridge Repository
Year: 2017
Subjects: protein aggregation
amyloid toxicity
neurodegeneration
aggregation inhibitors
antibody
single-molecule fluorescence

description: $\textbf{Background:}$ The aggregation of the protein ɑ-synuclein (ɑS) underlies a range of increasingly common neurodegenerative disorders including Parkinson’s disease. One widely explored therapeutic strategy for these conditions is the use of antibodies to target aggregated ɑS, although a detailed molecular-level mechanism of the action of such species remains elusive. Here, we characterize ɑS aggregation in vitro in the presence of two ɑS-specific single-domain antibodies (nanobodies), NbSyn2 and NbSyn87, which bind to the highly accessible C-terminal region of ɑS. $\textbf{Results:}$ We show that both nanobodies inhibit the formation of ɑS fibrils. Furthermore, using single-molecule fluorescence techniques, we demonstrate that nanobody binding promotes a rapid conformational conversion from more stable oligomers to less stable oligomers of ɑS, leading to a dramatic reduction in oligomer-induced cellular toxicity. $\textbf{Conclusions:}$ The results indicate a novel mechanism by which diseases associated with protein aggregation can be inhibited, and suggest that NbSyn2 and NbSyn87 could have significant therapeutic potential.
description: Parkinson’s UK (H-0903). EDG was supported by the Medical Research Council (MRC G1002272). DK was funded by ERC (669237) and the Royal Society.
Supernova neutrinos in the light of FCNC
Creators: name: Mansour, S. W.
name: Kuo, T. K.
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We study the effect of including flavor changing neutral currents (FCNC) in the analysis of the neutrino signal of a supernova burst. When we include the effect of the FCNC which are beyond the standard model (SM) in the study of the MSW resonant conversion, we obtain dramatic changes in the Δm^2-sin^2(2θ) probability contours for neutrino detection.
description: 8 pages in ReVTeX,3 figures. Revised manuscript submitted to Phys. Rev. D
Dynamic behavior of double and triple adjacent 2D hills using boundary element method
Creators: name: Naghizadehrokni, Mehran
Publisher: name: figshare
Year: 2019
Subjects: subject: 90501 Civil Geotechnical Engineering
subject: FOS: Civil engineering

description: A 2D boundary element method with material damping is developed in order to
seismic investigation of constructions with different configurations. The boundary
element algorithm, which utilized the time-convoluted kernels is employed in order
to incorporate proportional damping. In order to investigate the seismic reaction of
two dimensional double and triple semi-sine formed hills subjected to vertical P
and SV waves by using a developed viscoelastic boundary element algorithm and
responses are presented in the form of graphs, amplification pictures and
displacement. In addition, the influences of various damping proportions on site of semi-sine hills with various shapes are analyzed. It can be concluded from the results that the crest of homogeneous adjacent hills have similar shape ratio, potential and larger maximum amplification in comparison with the crest of single hills. Although this difference is increased by increasing shape ratio, it is negligible within the proportions of study shape. In addition, multiplicity of hills increased frequency characteristic of amplification curve and the number of peaks and valleys.
Additional file 1 of The relationship between urologic cancer outcomes and national Human Development Index: trend in recent years
Creators: name: Xia, Xiao-Fang
name: Wang, Yi-Qiu
name: Shao, Shi-Yi
name: Zhao, Xin-Yu
name: Zhang, Shi-Geng
name: Li, Zhong-Yi
name: Yuan, Yi-Chu
name: Zhang, Nan
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Science Policy

description: Additional file 1. Fig. S1. Worldwide distribution of Urologic cancer burden in 2018. A total of 174 countries were included. (a), (c), (e) Age-standardized incidence (blue) and (b), (d), (f) age-standardized mortality (red) rates per 100,000 population of prostate cancer, bladder cancer, and kidney cancer, separately, indicated in a gradient color scale. Countries with data unavailable (light gray) were denoted.
Latitudinal clines in gene expression and $\textit{cis}$-regulatory element variation in $\textit{Drosophila melanogaster}$
Creators: name: Juneja, P
name: Quinn, A
name: Jiggins, Francis
Publisher: name: Apollo - University of Cambridge Repository
Year: 2016
Subjects: allele-specific expression
cline
Drosophila

description: $\textbf{BACKGROUND}$: Organisms can rapidly adapt to their environment when colonizing a new habitat, and this could occur by changing protein sequences or by altering patterns of gene expression. The importance of gene expression in driving local adaptation is increasingly being appreciated, and $\textit{cis}$-regulatory elements (CREs), which control and modify the expression of the nearby genes, are predicted to play an important role. Here we investigate genetic variation in gene expression in immune-challenged $\textit{Drosophila melanogaster}$ from temperate and tropical or sub-tropical populations in Australia and United States. $\textbf{RESULTS}$: We find parallel latitudinal changes in gene expression, with genes involved in immunity, insecticide resistance, reproduction, and the response to the environment being especially likely to differ between latitudes. By measuring allele-specific gene expression (ASE), we show that $\textit{cis}$-regulatory variation also shows parallel latitudinal differences between the two continents and contributes to the latitudinal differences in gene expression. $\textbf{CONCLUSIONS}$: Both Australia and United States were relatively recently colonized by$\textit{ D. melanogaster}$, and it was recently shown that introductions of both African and European flies occurred, with African genotypes contributing disproportionately to tropical populations. Therefore, both the demographic history of the populations and local adaptation may be causing the patterns that we see.
description: This work was funded by European Research Council grant DrosophilaInfection 281668 and the Natural Environment Research Council grant NE/L004232/1.
Derivation of the Effective Pion-Nucleon Lagrangian within Heavy Baryon Chiral Perturbation Theory
Creators: name: Misra, A.
name: Koltun, D. S.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Nuclear Theory (nucl-th)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We develop a method for constructing the Heavy Baryon Chiral Perturbation Theory Lagrangian (L_{HBChPT}), to a given chiral order, within HBChPT. We work within SU(2) theory, with only the pion field interacting with the nucleon. The main difficulties, which are solved, are to develop techniques for implementing charge conjugation invariance, and for taking the nucleon on shell, both within the nonrelativistic formalism. We obtain complete lists of independent terms in L_{HBChPT} through O(q^3) for off- shell nucleons. Then, eliminating equation-of-motion (eom) terms at the relativistic and nonrelativistic level (both within HBChPT), we obtain L_{HBCHPT} for on-shell nucleons, through O(q^3). The extension of the method (to obtain on-shell L_{HBChPT} within HBChPT) to higher orders is also discussed.
description: 31 pages, LaTex; original version shortened; 2 new tables and new material on extending on-shell reduction method within HBChPT to arbitrary chiral orders, included
Assessment of soil properties from catchment areas of Ravi and Beas rivers: a review
Creators: name: Kumar, Vinod
name: Sharma, Anket
name: Kaur, Parminder
name: Kumar, Rakesh
name: Keshavarzi, Ali
name: Bhardwaj, Renu
name: Thukral, Ashwani Kumar
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Biochemistry
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Plant Biology

description: Soil is a substantive environmental medium that is subjected to various physiochemical challenges derived by natural, as well as human activities. The present review attempts to summarize the pollution status of soil from the catchments areas of Beas and Ravi Rivers in Punjab, India, as reported by different workers. Principal component analysis (PCA) showed that anthropogenic activities and lithogenic factors are the major sources of metals. The average values of heavy metals of Beas River for heavy metals, Cr, Cu, Co, and Cd, were lower than the values suggested by Awasthi, European Union, and Ewers. The average values of C (0.29%), P (0.05 mg/g), and N (0.13 mg/g) were found for the Beas River, whereas for Ravi River the average values recorded were C (0.32%), P (0.01 mg/g), and N (0.16 mg/g). The results of contamination factor (CF) indicate that soil of Beas River is less contaminated by the metals. The results of ecological risk index indicate that metals showed low ecological risk in the soils of Beas River.