Additional file 1 of Balancing selection on an MYB transcription factor maintains the twig trichome color variation in Melastoma normale
Creators: name: Huang, Guilian
name: Wu, Wei
name: Chen, Yongmei
name: Zhi, Xueke
name: Zou, Peishan
name: Ning, Zulin
name: Fan, Qiang
name: Liu, Ying
name: Deng, Shulin
name: Zeng, Kai
name: Zhou, Renchao
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Table S1. Sampling information in this study. Table S2. Sequencing and mapping statistics of four pooled population samples of M. normale. Table S3. Population genetic statistics for four pooled population samples of M. mormale with a 5-Kb sliding window analysis. Table S4. Pairwise genetic differentiationacross the genome for four pooled population samples of M. mormale with a 5-Kb sliding window analysis. Table S5. SNP sites with the top 50 Fst values in the genome between the Wite and Red morphs of M. normale in Dishuiyan. Table S6. SNP sites with the top 50 Fst values in the genome between the Wite and Red morphs of M. normale in Maofengshan. Table S7. Pairwise genetic differentiationat the myb114 gene for four pooled population samples of M. mormale using Sanger sequencing. Table S8. Genotype counts and Fisher’s exact tests for association between haplogroup and twig trichome color in Dishuiyan and Maofengshan populationsof Melastoma normale. Table S9. The frequency of two main haplotypes of the myb114 gene in different morphs of M. normale in Maofengshan and Dishuiyan populations. Table S10. Nucleotide diversityand polymorphismof the myb114 gene and six surrounding segments in M. normale in the Maofengshan population. Table S11. Statistical significance on nucleotide diversityand polymorphismbetween the myb114 gene and six surrounding segments in M. normale in the Maofengshan population. Table S12. Specific primers for Melastoma species used in this paper. Fig. S1. The nucleotide diversityof four pooled population samples of M. normale across the genome. Fig. S2. The nucleotide polymorphismof four pooled population samples of M. normale across the genome. Fig. S3. Tajima’s D of four pooled population samples of M. normale across the genome. Fig. S4. Genetic differentiationbetween the same morphs sampled from Maofengshan and Dishuiyan based on a sliding window analysis of Pool-seq data. Fig. S5. The mapping depth of nucleotide positions 500000-525000 on scaffold27 for three species of Melastoma, namely, M. candidum, M. normale and M. dodecandrum. Fig. S6. Site frequency spectrum of the myb gene in Dishuiyanand Maofengshanpopulations of M. normale. Fig. S7. Haploview plot depicting the haplotype block structure of the myb114 gene for Dishuiyanand Maofengshanpopulations of M. normale. Fig. S8. β and NCD2 score density plot for three populations of Melastoma normale. Fig. S9. Nucleotide diversity and polymorphism of myb114 and surrounding regions in the Maofengshan population of Melastoma normale. Fig. S10. The mapping depth of nucleotide positions 500000-520000 on scaffold27 for one sample of M. candidum and two pooled population samples of M. normale from Dishuiyan. Fig. S11. Structural variation of the regions containing the myb114 gene observed in M. normale relative to M. candidum. SI text 1. Characterization of copy number of myb114 in six species of Melastoma.