cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Toxoplasma gondii
Creators: name: Scherrer, Patrick
name: Ryser-Degiorgis, Marie-Pierre
name: Marti, Iris A.
name: St
name: Borel, ephanie
name: Frey, Caroline F.
name: Mueller, Norbert
name: Ruetten, Maja
name: Basso, Walter
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Chromista
Miozoa
Eucoccidiida
Sarcocystidae
Toxoplasma
Toxoplasma gondii

description: 4.2. Epidemiology of T. gondii in the wild
 Transmission of T. gondii can occur in a wide variety of ways, including oral (carnivorism), faeco-oral and transplacental transmission. In felids, ingestion of tissue cysts from intermediate hosts is the most efficient route of transmission (Dubey, 2006). The diet of the Eurasian lynx in western and central Europe comprises mainly larger ungulates (Breitenmoser and Breitenmoser-Würsten, 2008). In Switzerland, roe deer (Capreolus c. capreolus) are the undisputed main prey, followed by chamois (Rupicapra r. rupicapra) and, to a minor extent, foxes (Vulpes vulpes) (Molinari-Jobin et al., 2007). Although no studies have been carried out in Switzerland on T. gondii infections on the main lynx prey yet, its occurrence in roe deer and chamois was demonstrated in Italy and France by high seroprevalences of 13–43.7% and 3.8–16.8%, respectively (Gaffuri et al., 2006; Gotteland et al., 2014; Crotta et al., 2022). Similar numbers might be expected in Switzerland. Another possibility of infection is through contact with domestic cats or wildcats, which typically encroach into lynx habitat.
description: Published as part of Scherrer, Patrick, Ryser-Degiorgis, Marie-Pierre, Marti, Iris A., St, Borel, ephanie, Frey, Caroline F., Mueller, Norbert, Ruetten, Maja & Basso, Walter, 2023, Exploring the epidemiological role of the Eurasian lynx (Lynx lynx) in the life cycle of Toxoplasma gondii, pp. 1-10 in International Journal for Parasitology: Parasites and Wildlife 21 on page 7, DOI: 10.1016/j.ijppaw.2023.03.005, http://zenodo.org/record/10668262
Analytical results for random walk persistence
Creators: name: Sire, Clement
name: Majumdar, Satya N.
name: Rudinger, Andreas
Publisher: name: arXiv
Year: 1998
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: In this paper, we present the detailed calculation of the persistence exponent $θ$ for a nearly-Markovian Gaussian process $X(t)$, a problem initially introduced in [Phys. Rev. Lett. 77, 1420 (1996)], describing the probability that the walker never crosses the origin. New resummed perturbative and non-perturbative expressions for $θ$ are obtained, which suggest a connection with the result of the alternative independent interval approximation (IIA). The perturbation theory is extended to the calculation of $θ$ for non-Gaussian processes, by making a strong connection between the problem of persistence and the calculation of the energy eigenfunctions of a quantum mechanical problem. Finally, we give perturbative and non-perturbative expressions for the persistence exponent $θ(X_0)$, describing the probability that the process remains bigger than $X_0\sqrt{}$.
description: 23 pages; accepted for publication to Phys. Rev. E (Dec. 98)
Relativistic and non-relativistic studies of nuclear matter
Creators: name: Banerjee, M. K.
name: Tjon, J. A.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Recently we showed that while the tensor force plays an important role in nuclear matter saturation in non-relativistic studies, it does not do so in relativistic studies. The reason behind this is the role of $M^*$, the sum of nucleon mass and its attractive self-energy in nuclear matter. Yet nonrelativistic calculations at a certain level of approximation are far less difficult than comparative relativistic calculation. Naturally the question arises if one can modify a nonrelativistic method, say, the lowest order Brueckner theory (LOBT), to reproduce approximately the results of a relativistic calculation. While a many body effect, the role of $M^*$ is intrinsically relativistic. It cannot be simulated by adding multi-body forces in a nonrelativistic calculation. Instead, we examine if adding a set of recipes to LOBT can be useful for the purpose. We point out that the differences in the results arise principally from two reasons - first, the role of $M^*$ and second, the disappearance in a relativistic treatment of the gap in the hole and particle energy spectra, present in LOBT. In this paper we show that LOBT, modified by {\it recipes} to remove these two reasons, generates results quite close to those of Dirac-Brueckner theory.
description: 8 pages, revtex
Interactions of solitons with positive and negative masses: Shuttle motion and co-acceleration
Creators: name: Sakaguchi, Hidetsugu
name: Malomed, Boris A.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Pattern Formation and Solitons (nlin.PS)
subject: Quantum Gases (cond-mat.quant-gas)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We consider a possibility to realize self-accelerating motion of interacting states with effective positive and negative masses in the form of pairs of solitons in two-component BEC loaded in an optical-lattice (OL) potential. A crucial role is played by the fact that gap solitons may feature a negative dynamical mass, keeping their mobility in the OL. First, the respective system of coupled Gross-Pitaevskii equations (GPEs) is reduced to a system of equations for envelopes of the lattice wave functions. Two generic dynamical regimes are revealed by simulations of the reduced system, viz., shuttle oscillations of pairs of solitons with positive and negative masses, and splitting of the pair. The co-accelerating motion of the interacting solitons, which keeps constant separation between them, occurs at the boundary between the shuttle motion and splitting. The position of the co-acceleration regime in the system's parameter space can be adjusted with the help of an additional gravity potential, which induces its own acceleration, that may offset the relative acceleration of the two solitons, while gravity masses of both solitons remain positive. The numerical findings are accurately reproduced by a variational approximation. Collisions between shuttling or co-accelerating soliton pairs do not alter the character of the dynamical regime. Finally, regimes of the shuttle motion, co-acceleration, and splitting are corroborated by simulations of the original GPE system, with the explicitly present OL potential.
description: to be published in Physica Review E
ESM-NBR: fast and accurate nucleic acid-binding residue prediction via protein language model feature representation and multi-task learning
Creators: name: Zeng, Wenwu
name: Lv, Dafeng
name: Liu, Wenjuan
name: Peng, Shaoliang
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantitative Methods (q-bio.QM)
subject: Machine Learning (cs.LG)
subject: FOS: Biological sciences
subject: FOS: Computer and information sciences

description: Protein-nucleic acid interactions play a very important role in a variety of biological activities. Accurate identification of nucleic acid-binding residues is a critical step in understanding the interaction mechanisms. Although many computationally based methods have been developed to predict nucleic acid-binding residues, challenges remain. In this study, a fast and accurate sequence-based method, called ESM-NBR, is proposed. In ESM-NBR, we first use the large protein language model ESM2 to extract discriminative biological properties feature representation from protein primary sequences; then, a multi-task deep learning model composed of stacked bidirectional long short-term memory (BiLSTM) and multi-layer perceptron (MLP) networks is employed to explore common and private information of DNA- and RNA-binding residues with ESM2 feature as input. Experimental results on benchmark data sets demonstrate that the prediction performance of ESM2 feature representation comprehensively outperforms evolutionary information-based hidden Markov model (HMM) features. Meanwhile, the ESM-NBR obtains the MCC values for DNA-binding residues prediction of 0.427 and 0.391 on two independent test sets, which are 18.61 and 10.45% higher than those of the second-best methods, respectively. Moreover, by completely discarding the time-cost multiple sequence alignment process, the prediction speed of ESM-NBR far exceeds that of existing methods (5.52s for a protein sequence of length 500, which is about 16 times faster than the second-fastest method). A user-friendly standalone package and the data of ESM-NBR are freely available for academic use at: https://github.com/wwzll123/ESM-NBR.
Вестник Кольского научного центра РАН, Выпуск 12019
Creators: name: Кольский научный центр Российской академии наук
Publisher: name: Вестник Кольского научного центра РАН
Year: 2019

description: , Выпуск 12019
description: Журнал посвящен решению проблем, связанных с фундаментальными и прикладными аспектами переработки комплексного минерального сырья, металлургическими и гидрометаллургическими процессами получения новых функциональных материалов различного назначения, методами исследования и применения материалов, утилизации отходов переработки минерального сырья, экономики и экологии новых технологических процессов, аналитического обеспечения исследований. Журнал адресован специалистам в данных областях.
Inevitable Si surface passivation prior to III-V/Si epitaxy: A strong impact on wetting properties
Creators: name: Chandrasekharan, S. Pallikkara
name: Gupta, D.
name: Cornet, C.
name: Pedesseau, L.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Applied Physics (physics.app-ph)
subject: Chemical Physics (physics.chem-ph)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: Here, we quantitatively estimate the impact of the inevitable Si surface passivation prior to III-V/Si hetero-epitaxy on the surface energy of the Si initial substrate, and explore its consequences for the description of wetting properties. Density Functional Theory is used to determine absolute surface energies of P- and Ga-passivated Si surfaces and their dependencies with the chemical potential. Especially, we show that, while a ~90 meV/$Å^2$ surface energy is usually considered for the nude Si surface, surface passivation by Ga- or P- atoms leads to a strong stabilization of the surface, with a surface energy in the [50-75 meV/$Å^2$] range. The all-ab initio analysis of the wetting properties indicate that a complete wetting situation would become possible only if the initial passivated Si surface could be destabilized by at least 15 meV/$Å^2$ or if the III-V (001) surface could be stabilized by the same amount.
description: 6 pages, 4 figures
Appendix to "Between Science and Fiction: The Transmission of the Film Frau Im Mond (1929) in Chinese Periodicals, 1929-1933"
Creators: name: Ye, Michelle Jia
Publisher: name: figshare
Year: 2019
Subjects: subject: 200323 Translation and Interpretation Studies
subject: FOS: Languages and literature

description: The table presents a structured record of the periodical items retrieved by a keyword search on National Periodical Index (http://www.cnbksy.cn), a online database of early modern Chinese periodicals. The search was conducted in April 2018.
The table serves as an appendix to the article titled "Between Science and Fiction: The Transmission of the Film Frau Im Mond (1929) in Chinese Periodicals, 1929-1933". The article will be published by Journal of Translation Studies in 2019.

 
Static and dynamic coupling transitions of vortex lattices in disordered anisotropic superconductors
Creators: name: Olson, C. J.
name: Zimanyi, G. T.
name: Kolton, A. B.
name: Gronbech-Jensen, N.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We use three-dimensional molecular dynamics simulations of magnetically interacting pancake vortices to study vortex matter in disordered, highly anisotropic materials such as BSCCO. We observe a sharp 2D-3D transition from vortex lines to decoupled pancakes as a function of relative interlayer coupling strength, with an accompanying large increase in the critical current remniscent of a second peak effect. We find that decoupled pancakes, when driven, simultaneously recouple and order into a crystalline-like state at high drives. We construct a dynamic phase diagram and show that the dynamic recoupling transition is associated with a double peak in dV/dI.
description: 4 pages, 4 postscript figures
Ampedus cardinalis
Creators: name: Chittaro, Yannick
name: Sanchez, Andreas
name: Blanc, Mickaël
name: Monnerat, Christian
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Elateridae
Ampedus
Ampedus cardinalis

description: Ampedus cardinalis (Schiödte, 1865)
1 ex., Monteceneri (TI), 714/104, 448 m, 11.5– 2.6.2012, leg. Y. Chittaro. Redécouvert pour le sud des Alpes (précédente donnée: 1 ex., Chiasso (TI), 30.5.1928, leg. P. Fontana, Museo cantonale di storia naturale di Lugano).
description: Published as part of Chittaro, Yannick, Sanchez, Andreas, Blanc, Mickaël & Monnerat, Christian, 2013, Coléoptères capturés en Suisse par pièges attractifs aériens: bilan après trois années et discussion de la méthode, pp. 101-113 in Entomo Helvetica 6 on page 108, DOI: 10.5169/seals-986046, http://zenodo.org/record/8057191
New Forms of Deuteron Equations and Wave Function Representations
Creators: name: Fachruddin, I.
name: Elster, Ch.
name: Gloeckle, W.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: A recently developed helicity basis for nucleon-nucleon (NN) scattering is applied to th e deuteron bound state. Here the total spin of the deuteron is treated in such a helicity representation. For the bound state, two sets of two coupled eigenvalue equations are developed, where the amplitudes depend on two and one variable, respectively. Numerical illustrations based on the realistic Bonn-B NN potential are given. In addition, an `operator form' of the deuteron wave function is presented, and several momentum dependent spin densities are derived and shown, in which the angular dependence is given analytically.
description: 19 pages (Revtex), 9 figs
Optical conductivity of the Kondo insulator YbB_12: Gap formation and low-energy excitations
Creators: name: Okamura, H.
name: Kimura, S.
name: Shinozaki, H.
name: Nanba, T.
name: Iga, F.
name: Shimizu, N.
name: Takabatake, T.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Optical reflectivity experiments have been conducted on single crystals of the Kondo insulator YbB_12 in order to obtain its optical conductivity, σ(ω). Upon cooling below 70 K, a strong supression of σ(ω) is seen in the far-infrared region, indicating the opening of an energy gap of ~ 25 meV. This gap development is coincident with a rapid decrease in the magnetic susceptibility, which shows that the gap opening has significant influence on magnetic properties. A narrow, asymmetric peak is observed at ~40 meV in σ(ω), which is attributed to optical transitions between the Yb 4f-derived states across the gap. In addition, a broad peak is observed at ~0.25 eV. This peak is attributed to transitions between Yb 4f-derived states and p-d band, and is reminiscent of similar peaks previously observed for rare-earth hexaborides.
description: 4 pages, 4 figures
Zero-temperature d-wave superconducting phase transition
Creators: name: Herbut, Igor F.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: The Ginzburg-Landau-Wilson theory that describes the disordered Fermi liquid - d-wave superconductor phase transition at zero temperature is derived at weak coupling. The theory represents an interacting dissipative system of bosonic Cooper pairs in an effective random potential. I show that there exists a wide crossover regime in the theory controlled by a line of Gaussian fixed points, each of which in two dimensions is characterized by a different universal value of the dc critical conductivity. Relation to experiments on overdoped and underdoped cuprates is discussed.
description: RevTex, 4 pages, 2 ps figs, published version
Phenomenology of kaonic atoms and other strange hadronic atoms
Creators: name: Gal, Avraham
Publisher: name: arXiv
Year: 2001
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Recent optical-potential studies of the phenomenology of kaonic atoms are reviewed. It is shown that the data can be fitted by a complex optical potential with either a relatively shallow attractive component (about -50 MeV at nuclear-matter density), as suggested by a self consistent application of chirally motivated coupled-channels models, or a relatively deep attractive component (about -180 MeV at nuclear-matter density) as suggested by a mean-field extrapolation of a phenomenological low-density expansion. Both classes of these optical potentials, due to their strongly absorptive component, predict similarly structured relatively narrow `deeply bound' kaonic-atom states with widths saturating at about 2 MeV. Possible formation reactions are briefly discussed. The more speculative case for relatively narrow deeply bound kaonic nuclear states is briefly mentioned. Recent works on other strange hadronic atom systems, for the negatively charged Sigma and Cascade hyperons, are also discussed.
description: 11 pages including 8 figures, to be published in NPA (Proc. HYP2000)
Fully Frustrated Ising System on a 3D Simple Cubic Lattice: Revisited
Creators: name: Bernardi, L. W.
name: Hukushima, K.
name: Takayama, H.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Using extensive Monte Carlo simulations, we clarify the critical behaviour of the 3 dimensional simple cubic Ising Fully Frustrated system. We find two transition temperatures and two long range ordered phases. Within the present numerical accuracy, the transition at higher temperature is found to be second order and we have extracted the standard critical exponent using finite size scaling method. On the other hand, the transition at lower temperature is found to be first order. It is argued that entropy plays a major role on determining the low temperature state.
description: 14 pages 14 figures iop style included
Intrasubband and Intersubband Electron Relaxation in Semiconductor Quantum Wire Structures
Creators: name: Tavares, Marcos R. S.
name: Sarma, S. Das
name: Hai, G-Q.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We calculate the intersubband and intrasubband many-body inelastic Coulomb scattering rates due to electron-electron interaction in two-subband semiconductor quantum wire structures. We analyze our relaxation rates in terms of contributions from inter- and intrasubband charge-density excitations separately. We show that the intersubband (intrasubband) charge-density excitations are primarily responsible for intersubband (intrasubband) inelastic scattering. We identify the contributions to the inelastic scattering rate coming from the emission of the single-particle and the collective excitations individually. We obtain the lifetime of hot electrons injected in each subband as a function of the total charge density in the wire.
description: Submitted to PRB. 20 pages, Latex file, and 7 postscript files with Figures
A Highly Spinning and Aligned Binary Black Hole Merger in the Advanced LIGO First Observing Run
Creators: name: Zackay, Barak
name: Venumadhav, Tejaswi
name: Dai, Liang
name: Roulet, Javier
name: Zaldarriaga, Matias
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We report a new binary black hole merger in the publicly available LIGO First Observing Run (O1) data release. The event has an inverse false alarm rate of one per six years in the detector-frame chirp-mass range $\mathcal{M}^{\rm det} \in [20,40]M_\odot$ in a new independent analysis pipeline that we developed. Our best estimate of the probability that the event is of astrophysical origin is $P_{\rm astro} \sim 0.71\, .$ The estimated physical parameters of the event indicate that it is the merger of two massive black holes, $\mathcal{M}^{\rm det} = 31^{+2}_{-3}\,M_\odot$ with an effective spin parameter, $χ_{\rm eff} = 0.81^{+0.15}_{-0.21}$, making this the most highly spinning merger reported to date. It is also among the two highest redshift mergers observed so far. The high aligned spin of the merger supports the hypothesis that merging binary black holes can be created by binary stellar evolution.
description: Comments are welcome. To be submitted to a journal soon
Supplementary document for Calculations of adsorption-dependent refractive indices of metal-organic frameworks for gas sensing applications - 6121091.pdf
Creators: name: Salehifar, Nahideh
name: Holtmann, Peter
name: Prakash, Abhishek
name: Soleimani, Homayoon
name: Gerald, Rex
name: Huang, Jie
Publisher: name: Optica Publishing Group
Year: 2023
Subjects: Uncategorized

description: Calculation results of various MOF/gas systems
Ampedus melanurus Mulsant & Guillebeau 1855
Creators: name: Chittaro, Yannick
name: Sanchez, Andreas
name: Blanc, Mickaël
name: Monnerat, Christian
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Elateridae
Ampedus
Ampedus melanurus

description: Ampedus melanurus Mulsant & Guillebeau, 1855
1 ex., San Vittore (GR), 729/123, 755 m, 10.5- 30.5.2011, leg. Y. Chittaro. Nouveau pour le Sud des Alpes.
description: Published as part of Chittaro, Yannick, Sanchez, Andreas, Blanc, Mickaël & Monnerat, Christian, 2013, Coléoptères capturés en Suisse par pièges attractifs aériens: bilan après trois années et discussion de la méthode, pp. 101-113 in Entomo Helvetica 6 on page 108, DOI: 10.5169/seals-986046, http://zenodo.org/record/8057191
A New Search Pipeline for Compact Binary Mergers: Results for Binary Black Holes in the First Observing Run of Advanced LIGO
Creators: name: Venumadhav, Tejaswi
name: Zackay, Barak
name: Roulet, Javier
name: Dai, Liang
name: Zaldarriaga, Matias
Publisher: name: arXiv
Year: 2019
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: In this paper, we report on the construction of a new and independent pipeline for analyzing the public data from the first observing run of advanced LIGO for mergers of compact binary systems. The pipeline incorporates different techniques and makes independent implementation choices in all its stages including the search design, the method to construct template banks, the automatic routines to detect bad data segments ("glitches") and to insulate good data from them, the procedure to account for the non-stationary nature of the detector noise, the signal-quality vetoes at the single-detector level and the methods to combine results from multiple detectors. Our pipeline enabled us to identify a new binary black-hole merger GW151216 in the public LIGO data. This paper serves as a bird's eye view of the pipeline's important stages. Full details and derivations underlying the various stages will appear in accompanying papers.
description: Comments are welcome!
Sharp bounds for finitely many embedded eigenvalues of perturbed Stark type operators
Creators: name: Liu, Wencai
Publisher: name: arXiv
Year: 2018
Subjects: subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: For perturbed Stark operators $Hu=-u^{\prime\prime}-xu+qu$, the author has proved that $\limsup_{x\to \infty}{x}^{\frac{1}{2}}|q(x)|$ must be larger than $\frac{1}{\sqrt{2}}N^{\frac{1}{2}}$ in order to create $N$ linearly independent eigensolutions in $L^2(\mathbb{R}^+)$. In this paper, we apply generalized Wigner-von Neumann type functions to construct embedded eigenvalues for a class of Schrödinger operators, including a proof that the bound $\frac{1}{\sqrt{2}}N^{\frac{1}{2}}$ is sharp.
Values of liquid biopsy in early detection of cancer: results from meta-analysis
Creators: name: Jia, Sinong
name: Xie, Li
name: Li, Lei
name: Qian, Ying
name: Wang, Jie
name: Wang, Suna
name: Zhang, Weituo
name: Qian, Biyun
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Information Systems not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: There is tremendous interest in the development of liquid biopsy techniques, but the potential role of liquid biopsy for the early detection of cancer has not yet been elucidated. We aim to explore the performance of liquid biopsy in the early diagnosis of cancer. A systematic review was conducted of liquid biopsy in cancer early detection. Meta-regression was carried out to explore the source of heterogeneity and publication bias was also evaluated. Overall, there were six types of biomarkers and 17 studies focusing on liquid biopsy in the early detection of cancer, 7 studies in ctDNA, 5 studies in cfDNA, 2 studies in CTC, and the other three studies used circulating nucleosome, microRNA, and multiple biomarkers, respectively. Pooled sensitivity and specificity of liquid biopsy in cancer early detection was 0.76 (95%CI:0.67–0.83) and 0.92 (95%CI:0.86–0.96) and the area under the SROC curve was 0.91 (95%CI:0.88–0.93). The current evidence shows that liquid biopsy has relatively low sensitivity and high specificity in cancer early detection. Among all these biomarkers, cfDNA may have potentially promising value in cancer early detection, thereby supporting further study of cancer early detection. The study is registered at PROSPERO (Identifier number: CRD42020137205).
Multiparticle Entanglement Resolution Analyzer based on Quantum-Control-Assisted Uncertainty Relation
Creators: name: Ma, Shao-Qiang
name: Zheng, Xiao
name: Zhang, Guo-Feng
name: Fan, Heng
name: Liu, Wu-Ming
name: Kwek, Leong-Chuan
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We construct a quantum-control-assisted multi-observable variance-based uncertainty relation, and the uncertainty relation obtained indicates that we can prepare a quantum state, in which the measurement results of any observables can be predicted precisely with the help of quantum control and entanglement resource. The new variance-based uncertainty relation provides a concept of "multiparticle entanglement resolution lines" for multiparticle entangled pure states, that can delineate different multiparticle entanglement classes, and thus it can be considered as an analyzer of multiparticle entanglement classes. The analyzer is used to identify different multiparticle entanglement classes with a suitable number of incompatible measurements, without a complete knowledge of the quantum state.
description: 6 pages, 3 figures, any comments are welcome
Coulomb versus nuclear break-up of 11Be halo nucleus in a non perturbative framework
Creators: name: Fallot, M.
name: Scarpaci, J. A.
name: Lacroix, D.
name: Chomaz, Ph.
name: Margueron, J.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: The 11Be break-up is calculated using a non perturbative time-dependent quantum calculation. The evolution of the neutron halo wave function shows an emission of neutron at large angles for grazing impact parameters and at forward angles for large impact parameters. The neutron angular distribution is deduced for the different targets and compared to experimental data. We emphasize the diversity of diffraction mechanisms, in particular we discuss the interplay of the nuclear effects such as the towing mode and the Coulomb break-up. A good agreement is found with experimental data.
description: 9 figures, this paper was accepter in Nuclear Physics A on sept, 2001
Ampedus nigroflavus
Creators: name: Chittaro, Yannick
name: Sanchez, Andreas
name: Blanc, Mickaël
name: Monnerat, Christian
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Elateridae
Ampedus
Ampedus nigroflavus

description: Ampedus nigroflavus (Goeze, 1777)
1 ex., Valsot (GR), 825/190, 1 104 m, 21.5– 20.6.2012, leg. A. Sanchez. 1 ex., Valsot (GR), 825/190, 1 104 m, 20.6– 11.7.2012, leg. A. Sanchez. 2 ex., Valsot (GR), 826/191, 1 086 m, 21.5– 20.6.2012, leg. A. Sanchez. Redécouvert pour la Suisse (précédente donnée: 1 ex., Aarwangen (BE), 19.2.1977, leg. S. Kiener, Muséum d’histoire naturelle de Genève) et nouveau pour les Alpes internes orientales
description: Published as part of Chittaro, Yannick, Sanchez, Andreas, Blanc, Mickaël & Monnerat, Christian, 2013, Coléoptères capturés en Suisse par pièges attractifs aériens: bilan après trois années et discussion de la méthode, pp. 101-113 in Entomo Helvetica 6 on page 108, DOI: 10.5169/seals-986046, http://zenodo.org/record/8057191
MOESM1 of Association between micronutrient deficiency and acute respiratory infections in healthy adults: a systematic review of observational studies
Creators: name: Wang, Min
name: Koh, Jiayun
name: Pang, Junxiong
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Science Policy
subject: Mental Health

description: Additional File 1. Description of PICOS criteria for a systematic review and search strategy. Table S1. Description of PICOS criteria for a systematic review assessing the association of micronutrient deficiency with the incidence, duration and severity of common cold and pneumonia. Table S2. Search strategy for micronutrient deficiency of cold and/or pneumonia PubMED, Embase, Scopus and the Cochrane Library.
Long term evolution of CFS-unstable neutron stars and role of differential rotation on short time-scales
Creators: name: Chugunov, Andrey I.
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: I consider differential rotation, associated with radiation-driven Chandrasekhar-Friedman-Schutz (CFS) instability and its possible observational evidences. I focus on the evolution of the apparent spin frequency, which is typically associated with the motion of a specific point on the stellar surface (e.g., polar cap). I start from long-term evolution (on the timescale when instability significantly changes the spin frequency). For this case, I reduce evolution equations to one differential equation and demonstrate that it can be directly derived from energy conservation law. This equation governs evolution rate through sequence of thermally equilibrium states and provides linear coupling for the cooling power and rotation energy losses via gravitational wave emission. In particular, it shows that differential rotation do not affect long-term spin-down. On the contrary, on the short timescales, differential rotation can significantly modify the apparent spin-down, if one examines a strongly unstable star with very small initial amplitude of unstable mode. This statement is confirmed by consideration of Newtonian non-magnetized perfect fluid and dissipative stellar models as well as magnetized stellar model. For example, despite that widely applied evolution equations predict effective spin to be constant in absence of dissipation, the CFS-unstable star should be observed as spinning-down. However, effects of differential rotation on apparent spin-down are negligible for realistic models of neutron star recycling, unless: (1) the neutron star is not magnetized, and (2) r-mode amplitude is modulated faster than the shear viscosity dissipation timescale, being large enough that spin-down can be measured on modulation timescale.
description: 14 pages, 1 figure, accepted for publication in MNRAS
Discontinuous Crack Fronts of Three-Dimensional Fractures
Creators: name: Tanaka, Yoshimi
name: Fukao, Koji
name: Miyamoto, Yoshihisa
name: Sekimoto, Ken
Publisher: name: arXiv
Year: 1998
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The relation between fracture surface morphology and the three-dimensional structure of crack fronts is investigated through direct observation of brittle cracks in gels. A key notion in this investigation is the discontinuity of the crack front, whose advancement creates the fracture surface. We discuss the significance of our findings in the studies of general three-dimensional brittle fractures.
description: 7 pages, 6 eps-figures, 3 jpg-figures
Clytus tropicus
Creators: name: Chittaro, Yannick
name: Sanchez, Andreas
name: Blanc, Mickaël
name: Monnerat, Christian
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Clytus
Clytus tropicus

description: Clytus tropicus (Panzer, 1795)
1 ex., Saxon (VS), 578/109, 500 m, 28.6– 12.7.2010, leg. Y. Chittaro. Espèce très localisée en Suisse, connue de moins de dix données. Cette nouvelle localité confirme sa présence actuelle en Valais.
description: Published as part of Chittaro, Yannick, Sanchez, Andreas, Blanc, Mickaël & Monnerat, Christian, 2013, Coléoptères capturés en Suisse par pièges attractifs aériens: bilan après trois années et discussion de la méthode, pp. 101-113 in Entomo Helvetica 6 on page 109, DOI: 10.5169/seals-986046, http://zenodo.org/record/8057191
Wrangling Messy CSV Files by Detecting Row and Type Patterns
Creators: name: Burg, Gerrit J. J. van den
name: Nazabal, Alfredo
name: Sutton, Charles
Publisher: name: arXiv
Year: 2018
Subjects: subject: Databases (cs.DB)
subject: FOS: Computer and information sciences
subject: E.5; H.2.8

description: It is well known that data scientists spend the majority of their time on preparing data for analysis. One of the first steps in this preparation phase is to load the data from the raw storage format. Comma-separated value (CSV) files are a popular format for tabular data due to their simplicity and ostensible ease of use. However, formatting standards for CSV files are not followed consistently, so each file requires manual inspection and potentially repair before the data can be loaded, an enormous waste of human effort for a task that should be one of the simplest parts of data science. The first and most essential step in retrieving data from CSV files is deciding on the dialect of the file, such as the cell delimiter and quote character. Existing dialect detection approaches are few and non-robust. In this paper, we propose a dialect detection method based on a novel measure of data consistency of parsed data files. Our method achieves 97% overall accuracy on a large corpus of real-world CSV files and improves the accuracy on messy CSV files by almost 22% compared to existing approaches, including those in the Python standard library.
title: 01_0201
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
Additional file 1 of Neurodevelopmental risk and adaptation as a model for comorbidity among internalizing and externalizing disorders: genomics and cell-specific expression enriched morphometric study
Creators: name: Kuang, Nanyu
name: Liu, Zhaowen
name: Yu, Gechang
name: Wu, Xinran
name: Becker, Benjamin
name: Fan, Huaxin
name: Peng, Songjun
name: Zhang, Kai
name: Zhao, Jiajia
name: Kang, Jujiao
name: Dong, Guiying
name: Zhao, Xingming
name: Sahakian, Barbara J.
name: Robbins, Trevor W.
name: Cheng, Wei
name: Feng, Jianfeng
name: Schumann, Gunter
name: Palaniyappan, Lena
name: Zhang, Jie
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 1. Supplementary information.
Spin 1/2 Magnetic Impurity in a 2D Magnetic System Close to Quantum Critical Point
Creators: name: Sushkov, O. P.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: We consider a magnetic impurity in a spin liquid state of a magnetic system which is close to the quantum phase transition to the magnetically ordered state. There is similarity between this problem and the Kondo problem. We derive the impurity Green's function, consider renormalizations of the magnetic moments of the impurity, calculate critical indexes for the magnetic susceptibilities and finally consider specific heat and magnetic interaction of two impurities.
description: 9 pages, 9 figures
Relativistic Faddeev 3D Equations for Three-Body Bound States Without Two-Body $t-$Matrices
Creators: name: Mohammadzadeh, M.
name: Radin, M.
name: Hadizadeh, M. R.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Nuclear Theory (nucl-th)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: This paper explores a novel revision of the Faddeev equation for three-body (3B) bound states, as initially proposed in Ref. \cite{golak2013three}. This innovative approach, referred to as \tmatrixfree in this paper, directly incorporates two-body (2B) interactions and completely avoids the 2B transition matrices. We extend this formalism to relativistic 3B bound states using a three-dimensional (3D) approach without using partial wave decomposition. To validate the proposed formulation, we perform a numerical study using spin-independent Malfliet-Tjon and Yamaguchi interactions. Our results demonstrate that the relativistic \tmatrixfree Faddeev equation, which directly implements boosted interactions, accurately reproduces the 3B mass eigenvalues obtained from the conventional form of Faddeev equation, referred to as \tmatrixdependent in this paper, with boosted 2B $t-$matrices. Moreover, the proposed formulation provides a simpler alternative to the standard approach, avoiding the computational complexity of calculating boosted 2B $t-$matrices and leading to significant computational time savings.
Nuclear isotope shifts within the local energy-density functional approach
Creators: name: Fayans, S. A.
name: Tolokonnikov, S. V.
name: Trykov, E. L.
name: Zawischa, D.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: The foundation of the local energy-density functional method to describe the nuclear ground-state properties is given. The method is used to investigate differential observables such as the odd-even mass differences and odd-even effects in charge radii. For a few isotope chains of spherical nuclei, the calculations are performed with an exact treatment of the Gor'kov equations in the coordinate-space representation. A zero-range cutoff density-dependent pairing interaction with a density-gradient term is used. The evolution of charge radii and nucleon separation energies is reproduced reasonably well including kinks at magic neutron numbers and sizes of staggering. It is shown that the density-dependent pairing may also induce sizeable staggering and kinks in the evolution of the mean energies of multipole excitations. The results are compared with the conventional mean field Skyrme-HFB and relativistic Hartree-BCS calculations. With the formulated approach, an extrapolation from the pairing properties of finite nuclei to pairing in infinite matter is considered, and the dilute limit near the critical point, at which the regime changes from weak to strong pairing, is discussed.
description: Latex, 91 pages, 22 postscript figures
Kiat sukses dalam penulisan jurnal ilmiah
Creators: name: Hady, Yazid
Publisher: name: Zenodo
Year: 2021
Subjects: Menulis Jurnal
Kiat Suskses

description: Kiat sukses dalam penulisan jurnal ilmiah acara Forum Pengawas Nusantara seri 6 GTK Madrasah 2021
Triplet superconductivity in ferromagnets due to magnon exchange
Creators: name: Bulaevskii, Lev
name: Eneias, Ronivon
name: Ferraz, Alvaro
Publisher: name: arXiv
Year: 2019
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We consider the superconducting pairing induced by spin waves exchange in a ferromagnet with both conduction and localized electrons, the latter being described as spins. We use the microscopic Eliashberg theory to describe the pairing of conducting electrons and the RPA approach to treat the localized spins assuming an exchange coupling between the conducting electrons and spins. In the framework of non relativistic Hamiltonian twe found that he spin wave exchange results in equal spin electron pairing described by the two components of the order parameter, $Δ^{\uparrow}$ (both spins up) and $Δ^{\downarrow}$ (both spins down). Due to the conservation of total spin projection on the axis of the spontaneous ferromagnetic moment, the spin wave exchange at low temperatures includes an emission of magnons and an absorption of thermal magnons by the conduction electrons. The absorption and emission processes depend differently on the temperature, with the absorption being progressively suppressed as the temperature drops. As a result, the superconducting pairing exists only if the electron-spin wave exchange parameter $g$ exceeds some critical value $g_c$. At $g>g_c$ pairing vanishes if the temperature drops below the lowest point $T_{cl}$ or increases above the upper critical point $T_{ch} \approx T_m$ (the Curie temperature) where the spin waves cease to exist. This behavior inherent to the spin carrying glue is in an obvious disagreement with the results of conventional BCS approach which assumes that the effective electron-electron attraction is simply proportional to the static magnetic susceptibility.
Vacuum currents for a scalar field in models with compact dimensions
Creators: name: Saharian, A. A.
Publisher: name: arXiv
Year: 2023
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: This paper reviews the investigations on the vacuum expectation value of the current density for a charged scalar field in spacetimes with toroidally compactified spatial dimensions. As background geometries locally Minkowskian (LM), locally de Sitter (LdS) and locally anti-de Sitter (LAdS) spacetimes are considered. Along compact dimensions quasiperiodicity conditions are imposed on the field operator and the presence of a constant gauge field is assumed. The vacuum current has non-zero components only along compact dimensions. Those components are periodic functions of the magnetic flux enclosed by compact dimensions with the period equal to the flux quantum. For LdS and LAdS geometries and for small values of the length of a compact dimension, compared with the curvature radius, the leading term in the expansion of the the vacuum current along that dimension coincides with that for LM bulk. In this limit the dominant contribution to the mode sum for the current density comes from the vacuum fluctuations with wavelength smaller than the curvature radius and the influence of the gravitational field is weak. The effects of the gravitational field are essential for lengths of compact dimensions larger than the curvature radius. In particular, instead of the exponential suppression of the current density in LM bulk one can have power law decay in LdS and LAdS spacetimes.
description: 32 pages, 6 figures, Review article, Subsection on fermionic currents, discussion and references added
Extended Fractons and Localized Phonons on Percolation Clusters
Creators: name: Kantelhardt, Jan W.
name: Bunde, Armin
name: Schweitzer, L.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: We investigate the localization behavior of vibrational modes of infinite percolation clusters above the critical concentration in two and three dimensions using the method of level statistics. We find that all eigenstates are localized in d=2, including the low frequency phonon states. In d=3 we obtain evidence for a localization-delocalization transition. But contrary to the common view this transition occurs for frequencies above the phonon fracton crossover giving rise to a new regime of extended fracton states.
description: 4 pages, 4 eps figures, RevTex; to be published in Phys. Rev. Lett