cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Psychotherapy with Asian clients
Creators: name: Kim, Lydia
Publisher: name: No Publisher Supplied
Year: 2015

description: This exploratory study examined, through the lens of East Asian therapists, how culture, diversity, and multicultural issues intersect when treating East Asian clients, so that mental health professionals may be provided with increased knowledge and insight in working with this population. Ten East Asian mental health professionals, experienced in the field of psychotherapy and having treated East Asian clients in the past five years, participated in interviews surveying their experiences working with such clients. A qualitative analysis of the participants’ interviews was completed using a grounded theory approach (Corbin & Strauss, 2014). Results from this study revealed themes consistent with the currently available literature, such as the impact of stigma on help-seeking behaviors and the therapy process, adoption of a family/systems-oriented framework, interaction of therapist and client acculturation, benefits of ethnic match and shared culture in treatment, difficulties in ethnically matched pairs, and limitations of diversity-related and multicultural training. Results also indicated additional themes positively and negatively impacting the therapeutic process which expanded upon the current knowledge. These included elements related to language proficiency, therapist identity, physical appearance, therapist and client level of acculturation, countertransference, generational differences, introspection and consultation, power and privilege, shame, and a greater emphasis on family dynamics/systems. The current study revealed notable gaps in the East Asian mental health literature linked to specific therapeutic interventions and treatment modifications, and organizational barriers between access and service delivery for this population. Implications for future research and cross-racial treatment included efficacy of modified treatment interventions, inclusion of more diversity-related courses and faculty of color in clinician training, clinical interventions, and language proficiency. Additional implications included developing updated policies on culturally competent care, advocacy and resources; strategies to address myths and stereotypes and encourage a holistic approach to mental health; and resources to attract more bilingual East Asian clinicians.
Additional file 20: of Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters
Creators: name: Jean-FĂŠlix Dallery
name: Lapalu, Nicolas
name: Zampounis, Antonios
name: PignĂŠ, Sandrine
name: Luyten, Isabelle
name: JoĂŤlle Amselem
name: Wittenberg, Alexander
name: Shiguo Zhou
name: Queiroz, Marisa De
name: Robin, Guillaume
name: Auger, Annie
name: Hainaut, Matthieu
name: Henrissat, Bernard
name: Kim, Ki-Tae
name: Lee, Yong-Hwan
name: Lespinet, Olivier
name: Schwartz, David
name: Thon, Michael
name: OâConnell, Richard
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 60506 Virology
subject: Computational Biology

description: Expression of TE copies based on average log (CPM), with a threshold of 1.35. Results are displayed for uniquely-mapped and multi-mapped read counts. (PDF 299 kb)
Limnophora simulans Stein 1913
Creators: name: Couri, Márcia
name: Pont, Adrian
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Muscidae
Limnophora
Limnophora simulans

description: Limnophora simulans Stein, 1913: 520.
(Fig. 7)
Lectotype female seen in BMNH (designated by Emden 1959: 191; see also Pont 2013: 108–109); in good condition.
Diagnosis. Scutum with an “ Anthomyia -pattern” in both sexes; dark postsutural band not connected to the dark scutellar spot; postsutural dorsocentrals 3; mid femur with 2 preapical setae; mid tibia with 2 posterior setae and without anterodorsal seta; costal spine absent; dark spots on third and fourth abdominal tergites subtriangular and large, reaching the anterior margin of each tergite.
Notes. In the same box with the lectotype there is a note by ACP made in 1987: “ 2♀ paralectotypes of simulans are paratypes of aethiopica Emd.” [L. elgonica aethiopica] (see Emden 1959: 190; Pont 2013: 108–109).
description: Published as part of Couri, Márcia & Pont, Adrian, 2017, Afrotropical Limnophora Robineau-Desvoidy (Diptera, Muscidae) with the description of four new species, pp. 501-536 in Zootaxa 4216 (6) on page 528, DOI: 10.5281/zenodo.242395
Chaetophractus nationi
Creators: name: James H. Honacki
name: Kenneth E. Kinman
name: James W. Koeppl
Publisher: name: Alien Press, Inc. & The Association of Systematics Collections
Year: 1982
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Edentata
Dasypodidae
Chaetophractus
Chaetophractus nationi

description: Chaetophractus nationi (Thomas, 1894). Ann. Mag. Nat. Hist., ser. 6, 13:71.
TYPE LOCALITY: Bolivia, Oruro.
DISTRIBUTION: Cochabamba, Orura, and La Paz (Bolivia) and possibly puna of Argentina and Chile.
COMMENT: Distribution and status uncertain, may be a subspecies of vellerosus; see Wetzel, 1982, in Montgomery, ed., The evolution and ecology of sloths, anteaters, and armadillos (Mammalia, Xenarthra = Edentata), Smithson. Inst. Press, Washington, D.C.
ISIS NUMBER: 5301407003003001001.
description: Published as part of James H. Honacki, Kenneth E. Kinman & James W. Koeppl, 1982, Order Edentata, pp. 52-57 in Mammal Species of the World (1 st Edition), Lawrence, Kansas, USA :Alien Press, Inc. & The Association of Systematics Collections on page 54, DOI: 10.5281/zenodo.7352995
Additional file 1: Table S1. of The relationship between working conditions and self-rated health among medical doctors: evidence from seven waves of the Medicine In Australia Balancing Employment and Life (Mabel) survey
Creators: name: Milner, Allison
name: Witt, Katrina
name: Spittal, Matthew
name: Bismark, Marie
name: Graham, Melissa
name: LaMontagne, Anthony
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Psychosocial job stressors and self-rated health, female doctors, random and fixed effect regression models using a continuous outcome measure, adjusted for all variables, MABEL, 2001 to 2008. Table S2. Psychosocial job stressors and self-rated health, male doctors, random and fixed effect regression models using a continuous outcome measure, adjusted for all variables, MABEL, 2001 to 2008. Fixed-effect regression model. (DOCX 108 kb)
The relationship between childhood experiences and adult interpersonal functioning and wellbeing
Creators: name: Kyei, Jane J.
Publisher: name: No Publisher Supplied
Year: 2015

description: Childhood traumatic experiences have been shown to have long term consequences that extend into adulthood. The present study used a community sample of 250 adults (51.6% women, mean age = 32, age range: 21–64 years) in Ghana to explore the long term associations of childhood trauma with adult interpersonal functioning and psychological wellbeing. Participants retrospectively reported perceived childhood traumas and responded to questions assessing their self-esteem, object-relations, and current PTSD symptoms. In this sample, 23.3% of participants reported experiencing a single childhood trauma, while 36.7% of participants reported experiencing at least two childhood traumas. The three most common childhood traumas reported were the death of a close friend/family member, extreme illness/injury, and high conflict parental marriage. The majority (73%) of reported traumas were in the category of traumas that arose from chance events or nature (general trauma), as compared to traumas perpetuated by a person usually known by the victim with the specific intent to harm the victim (relational trauma). The results indicated that adults with any perceived trauma experiences in childhood had significantly more impairment in their current interpersonal relatedness capacity and more PTSD symptoms than their counterparts without traumas. Participants who experienced relational traumas, as well as those with multiple traumatic experiences had more object relations impairment and more PTSD symptoms compared to those with general traumas and a single trauma respectively. No evidence was found for associations between perceived childhood trauma and current self-esteem in the sample. There was also no evidence that social support moderated the relationship between childhood trauma and adult self-esteem, interpersonal relatedness, and PTSD symptoms among participants. Recommendations for future studies are to explore the unique interpersonal and PTSD impairments associated with each individual type of childhood traumas investigated in the study, investigate associations of childhood trauma with physical outcomes in adulthood, and explore the possible moderating role of other elements of social support between childhood trauma and psychological and interpersonal outcomes in adulthood. Policy recommendations include the use of empirical studies from the country to advocate for better mental health resources, and social marketing campaigns to normalize mental health seeking behaviors.
Halecium pseudoincertus Pena Cantero 2014
Creators: name: Soto, Joan J.
name: Peña, Álvaro L.
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Cnidaria
Hydrozoa
Leptothecata
Haleciidae
Halecium
Halecium pseudoincertus

description: Halecium pseudoincertus Peña Cantero, 2014
(Fig. 13l)
Material examined. ANT XV/3: 48-154, one colony, c. 150 mm high.
Ecology and distribution. Reported at depths from 96 (Peña Cantero 2009, as Halecium incertus) to 1019 m (Peña Cantero 2008, as Halecium incertus); material examined at 569– 583 m. Circum-Antarctic species (Peña Cantero 2014b) found in rare occasions; present finding constitutes a new addition for the Weddell Sea fauna.
description: Published as part of Soto, Joan J. & Peña, Álvaro L., 2019, Benthic hydroids (Cnidaria, Hydrozoa) from the Weddell Sea (Antarctica), pp. 1-78 in Zootaxa 4570 (1) on page 42, DOI: 10.11646/zootaxa.4570.1.1, http://zenodo.org/record/2608527
Additional file 21: of Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters
Creators: name: Jean-Félix Dallery
name: Lapalu, Nicolas
name: Zampounis, Antonios
name: Pigné, Sandrine
name: Luyten, Isabelle
name: Amselem, Joëlle
name: Wittenberg, Alexander
name: Shiguo Zhou
name: Queiroz, Marisa De
name: Robin, Guillaume
name: Auger, Annie
name: Hainaut, Matthieu
name: Henrissat, Bernard
name: Kim, Ki-Tae
name: Lee, Yong-Hwan
name: Lespinet, Olivier
name: Schwartz, David
name: Thon, Michael
name: O’Connell, Richard
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Developmental Biology
subject: Plant Biology
subject: Virology

description: Stage-specific expression of C. higginsianum transposable elements (TEs). (A) Heatmap showing the expression profiles of TEs. (B) K-means clustering of 441 TE copies considered to be expressed in at least one fungal stage (VA = in vitro appressoria, PA = in planta appressoria, BP = biotrophic phase). For each of the five clusters, the average profile is shown in red. (C) Localization of in planta-expressed LTR transposon fragments in the 3’ UTR regions of C. higginsianum effector genes. IGV screenshots showing the genomic locations of TE copies RXX_R113 and RLX_P25.13 (red) in relation to effector genes ChEC35 and ChEC117 (green), respectively. RNA-Seq reads are displayed for appressoria in vitro (VA) and the biotrophic phase (BP). The RLX_P25.13 copy comprises a ‘solo’-LTR, likely produced by homologous recombination between two LTRs, leading to deletion of the internal retrotransposon sequence. (PDF 2850 kb)
Validation of the self-regulation strategies inventory
Creators: name: Lubin, Audrey Ruth
Publisher: name: No Publisher Supplied
Year: 2015

description: The current dissertation gathered empirical evidence of convergent and predictive validity for the Self-Regulation Strategies Inventory – Parent Rating Scale (SRSI-PRS), which measures parents’ perception of their child’s use of self-regulated learning (SRL) strategies during mathematics activities. The SRSI-PRS, which is part of the larger SRSI scale system incorporating a teacher version (SRSI-TRS) and a student version (SRSI-SR), was administered as part of a longitudinal study with middle school students that also included the SRSI teacher and student versions and three student motivational measures (self-efficacy, task interest, and perceived responsibility). Participants included 105 7th and 8th grade parents and their respective students and students’ teachers from a Northeastern suburban school district. Convergent validity was examined by assessing Pearson’s correlations between: (a) SRSI-PRS subscales, the SRSI-TRS, and SRSI-SR subscales, and (b) SRSI-PRS subscales and the three types of motivational beliefs. Hierarchical regression analyses were used to examine the unique variance that the SRSI-PRS accounted for when predicting students’ academic achievement. Two regression analyses were conducted across two different measures of academic achievement: (a) standardized test scores and (b) course grades. In terms of convergent validity evidence, the results showed that the three SRSI-PRS subscales exhibited medium and statistically significant relations with the SRSI-TRS, and small to medium statistically significant relations with the three SRSI-SR subscales and student self-efficacy. Additionally, two of the SRSI-PRS subscales displayed statistically significant, albeit small, relations with student’s task interest, but none of the SRSI-PRS subscales exhibited significant relations with the student’s perceived responsibility scale. Finally, there were mixed results regarding the predictive validity of the SRSI-PRS. The SRSI-PRS composite accounted for unique variance (R2 = 4.4%) in course grades, but did not account for any unique variance in predicting standardized mathematics test scores after controlling for student and teacher ratings.
Chaetophractus vellerosus
Creators: name: James H. Honacki
name: Kenneth E. Kinman
name: James W. Koeppl
Publisher: name: Alien Press, Inc. & The Association of Systematics Collections
Year: 1982
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Edentata
Dasypodidae
Chaetophractus
Chaetophractus vellerosus

description: Chaetophractus vellerosus (Gray, 1865). Proc. Zool. Soc. Lond., 1865:376.
TYPE LOCALITY: Bolivia, Santa Cruz, Santa Cruz (de la Sierra).
DISTRIBUTION: S.E. Bolivia through W. Paraguay and Chaco of Argentina to Mendoza and C. Buenos Aires Prov.
COMMENT: Reviewed by Wetzel, 1982, in Montgomery, ed., Smithson. Inst. Press, Washington, D.C.
ISIS NUMBER: 5301407003003002001.
description: Published as part of James H. Honacki, Kenneth E. Kinman & James W. Koeppl, 1982, Order Edentata, pp. 52-57 in Mammal Species of the World (1 st Edition), Lawrence, Kansas, USA :Alien Press, Inc. & The Association of Systematics Collections on page 55, DOI: 10.5281/zenodo.7352995
Seasonal incidence of gall forming psyllid, Pauropsylla tuberculata infesting Alstonia scholaris L., at Meerut Region
Creators: name: Rajput, Kumkum
Publisher: name: figshare
Year: 2025
Subjects: classificationCode: 410199
subject: Climate change impacts and adaptation not elsewhere classified

description: Abstract From September 2024 to January 2025, the current investigation was conducted in Meerut on the ornamental tree Alstonia scholaris (L.) R. Br. The psyllid, Pauropsylla tuberculata attack creates unattractive appearance for which it fails to serve the original function. According to the study, a certain percentage of leaf infestation was noted in the first two weeks of November (31.20%) and the second two weeks of November (15.00%). The first two weeks of October saw the highest percentage of leaf infestations (72.50%). The second two weeks of October had the lowest leaf infestation (11.00%). There was also minor leaf infestation during the first and second two weeks of November. The second two weeks of October had the lowest infestation, at 11.0 percent, while the first two weeks of January had the worst, at 24.8 percent. On average, the maximum number of galls during the second two weeks of October was 36.00. Percentage RH was shown to be positively and significantly correlated (80–89%) with all infestation indicators. The mean maximum temperature (24–300C) was shown to be negatively but significantly correlated with all of the above-mentioned infestation characteristics.
Targeting sexual stigma
Creators: name: Mandel, Sarah Hope
Publisher: name: No Publisher Supplied
Year: 2015

description: The purpose of this study is to explore the effects of sexual stigma on mental health and corresponding therapy implications when working with lesbian, gay, and bisexual (LGB) clients during the coming-out process.  This study provides a literature review of sexual stigma and its consequences, describes multicultural considerations, and illustrates what are currently thought of as the best treatment practices when working with sexual minority clients.  Treatment considerations are demonstrated via the hybrid case example of “Adam,” who serves as a vivid portrayal of a psychotherapy client who struggles with research-consistent symptomatology and a crisis in identity formation.  In addition to being informed by clinical examples in relevant psychological literature, Adam’s composite case is assembled from actual psychotherapy cases.  Demonstrating Adam’s course of treatment provides an avenue for describing key clinical issues related to LGB mental health and the coming-out process.  By adopting a qualitative, disciplined inquiry approach, I illustrate how, theoretically, treatment can be tailored to a potential client’s unique psychological struggles within the context of historical, contextual, and cultural factors.  Following a pragmatic case study research format (Fishman, 1999), Adam’s case material is analyzed both qualitatively and quantitatively.  It is proposed that the hybrid case of Adam demonstrates the potential for an integrative treatment approach, combining cognitive-behavioral, client-centered, and multicultural theories, to be helpful in the treatment of sexual minority patients who struggle with minority-stress, internalized homophobia, and identity formation concerns.  The composite case study of Adam is designed to be used as a resource for therapists who seek to gain additional understanding of how to provide effective and affirmative treatment for LGB clients.  The dissertation concludes with a critical discussion of the advantages and limitations of employing hybrid cases in lieu of actual ones.
Halecium secundum Jaderholm 1904
Creators: name: Soto, Joan J.
name: Peña, Álvaro L.
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Cnidaria
Hydrozoa
Leptothecata
Haleciidae
Halecium
Halecium secundum

description: Halecium secundum Jäderholm, 1904
(Fig. 14 b–c)
Material examined. ANT XV/3: 48-50, one colony, c. 70 mm high, with male gonothecae; 48-58, one colony, c. 65 mm high; ANT XXI/2: PS65/278, mass of stems, c. 140 mm high, with male gonothecae.
Remarks. The species had not been found with gonothecae since its original description (Jäderholm 1904), and only male ones are known. Our material is provided with male gonothecae: 1.3–1.5 mm high, 380 µm in maximum diameter; very delicate, easily collapsible; cylindrical, truncated distally; with terminal, circular aperture (Fig. 14c). Jäderholm (1904) mentioned a shallow distal furrow and a proximal sharp keel in the gonothecae. However, given the delicate consistency of the gonothecae, we regard Jäderholm’s observations as a probable artefact that occurred when mounting the microslides.
Peña Cantero (2014b) revised the holotype of Halecium brevithecum Watson, 2008, discussed the few differences between H. secundum and H. brevithecum, and noted that the latter was described from scarce, infertile material mounted in microslides, and that therefore cannot be completely characterized (Peña Cantero 2014b: 253). According to him, the hydrothecal adcauline wall of H. brevithecum is completely adnate to the internode in the holotype. In the original description, Watson (2008) also indicated that the adcauline hydrothecal wall is adnate to the internode. However, she also pointed out that the adcauline wall of the hydrophore becomes free just below the hydrotheca. This imply that the hydrothecae might also be free. In this sense, a figure provided by her (Watson 2008: Fig. 4c) apparently shows a free adcauline hydrothecal wall. It seems, therefore, that this character may vary among hydrothecae, as it has been documented for H. secundum (cf. Peña Cantero 2014b). Peña Cantero (2014b) also indicated that H. brevithecum can be distinguished from H. secundum by the distinctly longer first hydrothecate internode of the branches, the presence of reddish stems, and the perpendicular arrangement of the lower-order branches compared to previous ones. All these features have been clearly observed from the reproductive material of H. secundum. Being so, we consider Halecium brevithecum as a junior synonym of Jäderholm’s species.
Ecology and distribution. Previously reported at depths between 40 (Peña Cantero et al. 2013) and 502 m (Watson 2008, as H. brevithecum); present material at 119– 283 m. Circum-Antarctic species (Peña Cantero et al. 2013), with only three validated records and a fourth pending one (see Peña Cantero 2014b), present finding constitutes the first evidence from the Weddell Sea.
description: Published as part of Soto, Joan J. & Peña, Álvaro L., 2019, Benthic hydroids (Cnidaria, Hydrozoa) from the Weddell Sea (Antarctica), pp. 1-78 in Zootaxa 4570 (1) on page 42, DOI: 10.11646/zootaxa.4570.1.1, http://zenodo.org/record/2608527
Cultural differences in attachment and emotion
Creators: name: Maynigo, Pacita Manglapus
Publisher: name: No Publisher Supplied
Year: 2015

description: With increased globalization, immigration, and technological advances worldwide, the number of intercultural couples is growing rapidly in the United States. Despite the proliferation of intercultural relationships, limited research exists to guide therapists in the treatment of intercultural couples. This qualitative study aimed to explore couple therapists’ experience of implementing emotionally focused couples therapy (EFT), an evidence-based treatment, with intercultural couples. Exploratory questions unveiled participants’ own cultural background and whether it informed their beliefs about EFT and attachment, when and how cultural differences arise in treatment, whether common themes or patterns emerged among these couples, what interventions were used to address cultural differences and whether these interventions were inherent to EFT, how couples responded to these interventions, whether EFT is helpful in addressing cultural differences, and what advice they would give to therapists using EFT with intercultural couples. As hypothesized, it was found that (1) EFT was considered helpful with intercultural couples, given its emphasis on attachment, vulnerability, openness, curiosity, and individual uniqueness; (2) participants noticed common themes that arose among intercultural couples; and (3) participants found it helpful to actively inquire about and incorporate into treatment an awareness of cultural difference. Six major themes also emerged: (1) perceived “gaps” in therapists’ cultures of origin attracted them to EFT, particularly that their cultures lacked emotional engagement; (2) intercultural couples present with common themes with regard to cultural differences in extended family involvement, emotional engagement, gender role expectations, and childrearing practices; (3) cultural differences impact both relationship conflict and the therapeutic alliance, but these differences and their impact are often outside awareness; (4) exploring cultural differences often further illuminates partners’ experience of attachment and emotion; (5) therapists are flexible when intervening to address cultural differences, and couples respond positively; and (6) therapists believe EFT is helpful in addressing cultural differences with intercultural couples because of its emphasis on an open and curious stance, accessing vulnerability, and using the attachment frame. Taken together, these study findings suggest that EFT shows promise as an effective treatment with intercultural couples, provided that EFT is enhanced by existing multicultural models that explicitly address cultural differences. A new culturally sensitive model for EFT is proposed, and limitations and implications for research are discussed.
Additional file 1: of A mixed-methods feasibility and external pilot study to inform a large pragmatic randomised controlled trial of the effects of surgical wound dressing strategies on surgical site infections (Bluebelle Phase B): study protocol for a randomised controlled trial
Creators: name: Reeves, Barnaby
name: Andronis, Lazaros
name: Blazeby, Jane
name: Blencowe, Natalie
name: Calvert, Melanie
name: Coast, Joanna
name: Draycott, Tim
name: Donovan, Jenny
name: Gooberman-Hill, Rachael
name: Longman, Robert
name: Magill, Laura
name: Mathers, Jonathan
name: Pinkney, Thomas
name: Rogers, Chris
name: Rooshenas, Leila
name: Torrance, Andrew
name: Welton, Nicky
name: Woodward, Mark
name: Ashton, Kate
name: Bera, Katarzyna
name: Clayton, Gemma
name: Culliford, Lucy
name: Dumville, Jo
name: Elliott, Daisy
name: Ellis, Lucy
name: Gould-Brown, Hannah
name: Macefield, Rhiannon
name: McMullan, Christel
name: Pope, Caroline
name: Siassakos, Dimitrios
name: Strong, Sean
name: Talbot, Helen
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Biotechnology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: SPIRIT 2013 Checklist: Recommended items to address in a clinical trial protocol. (PDF 132 kb)
Additional file 1: Figure S1. of Coral cell separation and isolation by fluorescence-activated cell sorting (FACS)
Creators: name: Rosental, Benyamin
name: Kozhekbaeva, Zhanna
name: Fernhoff, Nathaniel
name: Tsai, Jonathan
name: Traylor-Knowles, Nikki
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Physiology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Hematology
subject: Computational Biology

description: Comparison of coral cell dissociation. P. damicornis cell suspension was collected either mechanically using a fine blade as described in the methods (A) or also incubated at room temperature with Trypsin 0.025% of Trypsin-EDTA in 3.3XPBS (B). Cell suspension was labeled with DAPI, CellRox, and LysoTracker Deep Red, and analyzed using SH800S Cell Sorter. Among the cells isolated without Trypsin (A) about 8% were positive to DAPI whereas 31% were positive to DAPI isolated with Trypsin (B), in the rectangular gate. This DAPI stain results corroborates our observation with Trypan Blue by light microscopy (data not shown). Figure S2. Symbiodinium positive population validation. In addition to the sorted cells microscopy, to validate that the population observed on the far red and green channels without labeling is Symbiodinium we used wild type (WT) Aiptasia that contains Symbiodinium and stable strains that stably grow for more than a decade without any symbiotic algae (APO). It can be observed that the gate of Symbiodinium positive cells is almost empty of cells (Right panel; 0.17%) in the APO strain while there are about 15% of cells in the gate of the wild type strain. Figure S3. Green fluorescent beads control for phagocytosis assays. To validate that the green fluorescent beads positive cells are the gated populations (Figs. 2, 5, 6) we ran the beads alone. Due to the size of the beads (1 μm) most of them that are not conjugated to cells are gated out on the size and granularity gate (FSC, SSC). Only 8 out of 10,000 events are positive in the gate. (DOCX 577 kb)
Additional file 4: Table S1. of Performance of risk prediction for inflammatory bowel disease based on genotyping platform and genomic risk score method
Creators: name: Guo-Bo Chen
name: Lee, Sang
name: Montgomery, Grant
name: Wray, Naomi
name: Visscher, Peter
name: Gearry, Richard
name: Lawrance, Ian
name: Andrews, Jane
name: Bampton, Peter
name: Mahy, Gillian
name: Bell, Sally
name: Walsh, Alissa
name: Connor, Susan
name: Sparrow, Miles
name: Bowdler, Lisa
name: Simms, Lisa
name: Krupa Krishnaprasad
name: Radford-Smith, Graham
name: Moser, Gerhard
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics

description: ANZ CD cases with additional clinical characteristics. (DOCX 13Â kb)
Chaetophractus villosus
Creators: name: James H. Honacki
name: Kenneth E. Kinman
name: James W. Koeppl
Publisher: name: Alien Press, Inc. & The Association of Systematics Collections
Year: 1982
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Edentata
Dasypodidae
Chaetophractus
Chaetophractus villosus

description: Chaetophractus villosus (Desmarest, 1804). Tabl. Meth. Mamm., 24:28.
TYPE LOCALITY: Argentina, Buenos Aires Province, between 35° S. and 36° S.
DISTRIBUTION: Chaco of Paraguay; Uruguay, Mendoza, Cordoba, Santa Fe, south to Santa Cruz (Argentina) and Chikchico (Chile); probably Chaco of Argentina and Bolivia.
COMMENT: Type locality discussed by Cabrera, 1958:214.
ISIS NUMBER: 5301407003003003001.
description: Published as part of James H. Honacki, Kenneth E. Kinman & James W. Koeppl, 1982, Order Edentata, pp. 52-57 in Mammal Species of the World (1 st Edition), Lawrence, Kansas, USA :Alien Press, Inc. & The Association of Systematics Collections on page 55, DOI: 10.5281/zenodo.7352995
Limnophora somereni Emden 1951
Creators: name: Couri, Márcia
name: Pont, Adrian
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Muscidae
Limnophora
Limnophora somereni

description: Limnophora somereni Emden, 1951: 402.
(Figs 96–99)
Holotype male seen; in good condition.
Diagnosis. Body length 5.0–6.0 mm; male holoptic; general colour brown with grey pollinosity; scutum with an “ Anthomyia -pattern”, the two presutural dark brown spots completely or almost completely fused; postsutural band broad; scutellum dark brown, grey pollinose only at apex; notopleuron grey pollinose; frons brown; antenna, arista and palpus brown; haltere yellow; legs brown; frontal triangle short; arista plumose; postsutural dorsocentrals 4, the first 2 short; lower katepisternal weak, inserted closer to the long posterior one; fore tibia without a submedian seta; mid femur with 2 preapical setae, one posterior and one posterodorsal; mid tibia with 2 posterior setae; sternite 1 bare; sternite 5 as in Fig. 96.
Terminalia. Cercal plate and surstylus as in Figs 97–98. Aedeagal complex as in Fig. 99.
Notes. One male paratype dissected and illustrated.
description: Published as part of Couri, Márcia & Pont, Adrian, 2017, Afrotropical Limnophora Robineau-Desvoidy (Diptera, Muscidae) with the description of four new species, pp. 501-536 in Zootaxa 4216 (6) on page 529, DOI: 10.5281/zenodo.242395
Additional file 1: of A mixed-methods feasibility and external pilot study to inform a large pragmatic randomised controlled trial of the effects of surgical wound dressing strategies on surgical site infections (Bluebelle Phase B): study protocol for a randomised controlled trial
Creators: name: Reeves, Barnaby
name: Andronis, Lazaros
name: Blazeby, Jane
name: Blencowe, Natalie
name: Calvert, Melanie
name: Coast, Joanna
name: Draycott, Tim
name: Donovan, Jenny
name: Gooberman-Hill, Rachael
name: Longman, Robert
name: Magill, Laura
name: Mathers, Jonathan
name: Pinkney, Thomas
name: Rogers, Chris
name: Rooshenas, Leila
name: Torrance, Andrew
name: Welton, Nicky
name: Woodward, Mark
name: Ashton, Kate
name: Bera, Katarzyna
name: Clayton, Gemma
name: Culliford, Lucy
name: Dumville, Jo
name: Elliott, Daisy
name: Ellis, Lucy
name: Gould-Brown, Hannah
name: Macefield, Rhiannon
name: McMullan, Christel
name: Pope, Caroline
name: Siassakos, Dimitrios
name: Strong, Sean
name: Talbot, Helen
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Biotechnology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: SPIRIT 2013 Checklist: Recommended items to address in a clinical trial protocol. (PDF 132 kb)
Chlamyphorus retusus
Creators: name: James H. Honacki
name: Kenneth E. Kinman
name: James W. Koeppl
Publisher: name: Alien Press, Inc. & The Association of Systematics Collections
Year: 1982
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Edentata
Dasypodidae
Chlamyphorus
Chlamyphorus retusus

description: Chlamyphorus retusus (Burmeister, 1863). Abh. Ges. Naturf. Halle, 7: 167.
TYPE LOCALITY: Bolivia, Santa Cruz, Santa Cruz (de la Sierra).
DISTRIBUTION: Gran Chaco, from provinces of Formosa, Chaco, and Salta of Argentina through W. Paraguay to C. Santa Cruz, Bolivia.
COMMENT: Reviewed by Wetzel, 1982, in Montgomery, ed., Smithson. Inst. Press, Washington, D.C.
ISIS NUMBER: 5301407003001001001 as Burmeisteria retusa.
description: Published as part of James H. Honacki, Kenneth E. Kinman & James W. Koeppl, 1982, Order Edentata, pp. 52-57 in Mammal Species of the World (1 st Edition), Lawrence, Kansas, USA :Alien Press, Inc. & The Association of Systematics Collections on page 55, DOI: 10.5281/zenodo.7352995
MOESM1 of Equality in the distribution of health material and human resources in Guangxi: evidence from Southern China
Creators: name: Sun, Jian
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Computational Biology

description: Additional file 1: Figure S1. Regional distribution of health material and human resources per 10, 000 persons in 2015.
Limnophora soror Robineau-Desvoidy 1830
Creators: name: Couri, Márcia
name: Pont, Adrian
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Muscidae
Limnophora
Limnophora soror

description: Limnophora soror Robineau-Desvoidy, 1830: 520.
Syntypes, sex and number not stated, lost; formerly in Dejean Collection, but now not in OUMNH or MNHNP.
Diagnosis. Arista pubescent; scutum with an “ Anthomyia -pattern”; presutural acrostichal setulae in 4–5 rows; dorsocentrals 2+3; lower katepisternal short, closer to posterior than to anterior seta; haltere yellow; fore tibia without a posterior seta; mid femur with 2 posterior preapical setae; mid tibia with 2 posterior setae; hind femur with a more or less complete row of long anteroventral setae (male) or with 3–5 anteroventral setae (female).
Notes. This species was described from Mauritius, but has not been recognised since the original description. Robineau-Desvoidy did not give the sex or number of his syntypes, stating only that the species was in the collection of Count Dejean. The syntypes are now lost, being in neither the OUMNH (remains of Dejean’s Diptera) nor MNHNP (where Robineau-Desvoidy’s “exotic” species are located). We have seen 1 male and 2 females in MNHNP (Réunion, Cilaos, i.1913) and 1 female in BMNH (Mauritius, La Pouce, 10.vi.1971, A.M. Hutson) that agree with the brief original description and which we identify as this species, which cannot otherwise be assigned to any of the known Malagasy or mainland African species.
description: Published as part of Couri, Márcia & Pont, Adrian, 2017, Afrotropical Limnophora Robineau-Desvoidy (Diptera, Muscidae) with the description of four new species, pp. 501-536 in Zootaxa 4216 (6) on page 529, DOI: 10.5281/zenodo.242395
The government’s food stamp program is responsible, in part, for the obesity epidemic in the U.S.
Creators: name: Anene, Emeka
name: Rafferty, Kaitlyn
name: Richards, Amanda
name: Fagan, Julie M.
Publisher: name: No Publisher Supplied
Year: 2014

description: Relationship Between Childhood Obesity and Families Receiving SNAP Benefits and the Purchase of “Empty Calorie Non-Foods”
Halecium tubatum Watson 2008
Creators: name: Soto, Joan J.
name: Peña, Álvaro L.
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Cnidaria
Hydrozoa
Leptothecata
Haleciidae
Halecium
Halecium tubatum

description: Halecium tubatum Watson, 2008
(Fig. 14 d–g)
Material examined. ANT XV/3: 48-276, several polyps, on Sc. nana; ANT XXI/2: PS65/278, several polyps, on Sy. weddelli and sponge; PS65/280, few polyps, on undetermined anthoathecata.
Remarks. Halecium tubatum was considered as species inquirenda by Peña Cantero (2014b), who pointed out that the species could correspond to incipient stems of other haleciids such as H. interpolatum. However, the analysis of the cnidome has contributed to a better characterization of the species (see below), proving to be different from other congenerics previously documented in Antarctic waters (cf. Peña Cantero 2014b). The species is considered here as valid, although mature specimens have not been found yet. We consider the two-three basal rings followed by a wavy internode (Fig. 14e), the absence of diaphragm (Fig. 14f), the presence of desmocytes (Fig. 14f), and the greatly recurved hydrotheca (Fig. 14 f–g), coupled with the size of the nematocysts, as unequivocal diagnostic characters of the species.
Cnidome composed of microbasic euryteles? [range 17.0–19.5 x 6.0–8.0 µm, mean 18.7±0.6 x 7.2±0.6 µm (n=19)] and microbasic mastigophores [range 8.0–8.5 x 1.5–2.0 µm, mean 8.2±0.2 x 1.6±0.2 µm (n=17)].
Ecology and distribution. Valid records of the species are restricted to the holotype, which was collected off Wilkes Land (East Antarctica) at a depth of 163 m (Watson 2008). Material examined here was found between 119 and 417 m depth. Present finding constitutes the first evidence of the species from both the Weddell Sea and West Antarctica, pointing to a circum-Antarctic distribution.
description: Published as part of Soto, Joan J. & Peña, Álvaro L., 2019, Benthic hydroids (Cnidaria, Hydrozoa) from the Weddell Sea (Antarctica), pp. 1-78 in Zootaxa 4570 (1) on page 43, DOI: 10.11646/zootaxa.4570.1.1, http://zenodo.org/record/2608527
Additional file 22: of Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters
Creators: name: Jean-FĂŠlix Dallery
name: Lapalu, Nicolas
name: Zampounis, Antonios
name: PignĂŠ, Sandrine
name: Luyten, Isabelle
name: JoĂŤlle Amselem
name: Wittenberg, Alexander
name: Shiguo Zhou
name: Queiroz, Marisa De
name: Robin, Guillaume
name: Auger, Annie
name: Hainaut, Matthieu
name: Henrissat, Bernard
name: Kim, Ki-Tae
name: Lee, Yong-Hwan
name: Lespinet, Olivier
name: Schwartz, David
name: Thon, Michael
name: OâConnell, Richard
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: 60506 Virology
subject: Computational Biology

description: Genomic locations of TE copies from clusters 2 and 3 showing extreme expression profiles. (PDF 222 kb)
Chlamyphorus truncatus Harlan 1825
Creators: name: James H. Honacki
name: Kenneth E. Kinman
name: James W. Koeppl
Publisher: name: Alien Press, Inc. & The Association of Systematics Collections
Year: 1982
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Edentata
Dasypodidae
Chlamyphorus
Chlamyphorus truncatus

description: Chlamyphorus truncatus Harlan, 1825. Ann. Lyc. Nat. Hist., 1:235.
TYPE LOCALITY: Argentina, Mendoza Prov., 33° 25' S. and 69° 45' E.
DISTRIBUTION: Argentina.
PROTECTED STATUS: U.S. ESA - Endangered.
ISIS NUMBER: 5301407003004001001.
description: Published as part of James H. Honacki, Kenneth E. Kinman & James W. Koeppl, 1982, Order Edentata, pp. 52-57 in Mammal Species of the World (1 st Edition), Lawrence, Kansas, USA :Alien Press, Inc. & The Association of Systematics Collections on page 55, DOI: 10.5281/zenodo.7352995
Additional file 22: of Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters
Creators: name: Jean-FĂŠlix Dallery
name: Lapalu, Nicolas
name: Zampounis, Antonios
name: PignĂŠ, Sandrine
name: Luyten, Isabelle
name: JoĂŤlle Amselem
name: Wittenberg, Alexander
name: Shiguo Zhou
name: Queiroz, Marisa De
name: Robin, Guillaume
name: Auger, Annie
name: Hainaut, Matthieu
name: Henrissat, Bernard
name: Kim, Ki-Tae
name: Lee, Yong-Hwan
name: Lespinet, Olivier
name: Schwartz, David
name: Thon, Michael
name: OâConnell, Richard
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Virology
subject: Computational Biology

description: Genomic locations of TE copies from clusters 2 and 3 showing extreme expression profiles. (PDF 222 kb)
Limnophora spangleri Zielke 1971
Creators: name: Couri, Márcia
name: Pont, Adrian
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Muscidae
Limnophora
Limnophora spangleri

description: Limnophora spangleri Zielke, 1971b: 178.
Holotype in NMSA (not seen).
Diagnosis. Arista plumose; dorsocentrals 2+3; fore tibia without a posterior seta; mid femur with 2 preapical setae; mid tibia with 2 posterior setae; lower katepisternal seta closer to the posterior one than to the anterior one; calypters brownish, haltere yellow; wing vein R4+5 with two setulae at base on ventral and dorsal surfaces.
Notes. According to Zielke (1971b), this species runs to L. notabilis (now L. quaterna) in Emden’s (1951) key, but can be easily distinguished by the short setulae on the dorsal surface of vein R1.
description: Published as part of Couri, Márcia & Pont, Adrian, 2017, Afrotropical Limnophora Robineau-Desvoidy (Diptera, Muscidae) with the description of four new species, pp. 501-536 in Zootaxa 4216 (6) on page 530, DOI: 10.5281/zenodo.242395
Hydrodendron arboreum
Creators: name: Soto, Joan J.
name: Peña, Álvaro L.
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Cnidaria
Hydrozoa
Leptothecata
Haleciidae
Hydrodendron
Hydrodendron arboreum

description: Hydrodendron arboreum (Allman, 1888)
(Fig. 14 h–j)
Material examined. ANT XV/3: 48-36, one colony, up to 80 mm high; ANT XVII/3: 111-5, one colony, c. 40 mm high; 111-6, several stems, c. 140 mm high, on stone, with gonothecae; 111-7, several stems, up to 120 mm high, and few stems, up to 6 mm high, on O. terranovae; 111-9, several stems, up to 110 mm high, with gonothecae; 111- 18, one colony, c. 135 mm high, with gonothecae; 111-19, one colony, c. 20 mm high; ANT XXI/2: PS65/39, a few stems, up to 33 mm high; PS65/278, one colony, c. 50 mm high; PS65/279, few stems, up to 35 mm high, on sponge; PS65/280, one colony, c. 20 mm high; PS65/281, some stems c. 80 mm high.
Ecology and distribution. Species collected between 18 (Hickson & Gravely 1907, as Halecium arboreum) and 1370 m depth (Peña Cantero & Ramil 2006); present material at 62– 175 m. Pan-Antarctic species widely distributed in Antarctic and sub-Antarctic waters (Peña Cantero & Ramil 2006). Documented in the Weddell Sea by means of remote operate vehicle (Dimmler et al. 2001), present contribution constitutes the first verifiable record from this Antarctic region.
description: Published as part of Soto, Joan J. & Peña, Álvaro L., 2019, Benthic hydroids (Cnidaria, Hydrozoa) from the Weddell Sea (Antarctica), pp. 1-78 in Zootaxa 4570 (1) on page 43, DOI: 10.11646/zootaxa.4570.1.1, http://zenodo.org/record/2608527
Limnophora spinata Stein 1914
Creators: name: Couri, Márcia
name: Pont, Adrian
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Muscidae
Limnophora
Limnophora spinata

description: Limnophora spinata Stein, 1914: 121.
(Figs 100–103)
Syntypes not seen and apparently lost (Pont 2013: 109).
Diagnosis. Scutum dark brown; postsutural dorsocentrals 3; mid femur with 2 preapical setae; mid tibia with 2 posterior setae; costal spine present and long; sternite 5 as in Fig. 100.
Terminalia. Cercal plate and surstylus as in Figs 101–102. Aedeagal complex as in Fig. 103.
Notes. There is a long series of males and females from Kenya in the BMNH. One male dissected and illustrated.
description: Published as part of Couri, Márcia & Pont, Adrian, 2017, Afrotropical Limnophora Robineau-Desvoidy (Diptera, Muscidae) with the description of four new species, pp. 501-536 in Zootaxa 4216 (6) on page 530, DOI: 10.5281/zenodo.242395
Additional file 23: of Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters
Creators: name: Jean-FĂŠlix Dallery
name: Lapalu, Nicolas
name: Zampounis, Antonios
name: PignĂŠ, Sandrine
name: Luyten, Isabelle
name: JoĂŤlle Amselem
name: Wittenberg, Alexander
name: Shiguo Zhou
name: Queiroz, Marisa De
name: Robin, Guillaume
name: Auger, Annie
name: Hainaut, Matthieu
name: Henrissat, Bernard
name: Kim, Ki-Tae
name: Lee, Yong-Hwan
name: Lespinet, Olivier
name: Schwartz, David
name: Thon, Michael
name: OâConnell, Richard
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 60506 Virology
subject: Computational Biology

description: Results of permutation tests for the association of transposon families with secondary metabolism and effector genes. (PDF 363 kb)