cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Clustering Instabilities, Arching, and Anomalous Interaction Probabilities as Examples for Cooperative Phenomena in Dry Granular Media
Creators: name: Luding, Stefan
Publisher: name: arXiv
Year: 1998
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: In a freely cooling granular material fluctuations in density and temperature cause position dependent energy loss. Due to strong local dissipation, pressure and energy drop rapidly and material moves from `hot' to `cold' regions, leading to even stronger dissipation and thus causing the density instability. The assumption of `molecular chaos' is valid only in the homogeneous cooling regime. As soon as the density instability occurs, the impact parameter is not longer uniformly distributed. The pair-correlation and the structure functions show that the molecular chaos assumption --- together with reasonable excluded volume modeling --- is important for short distances and irrelevant on large length scales. In this study, the probability distribution of the collision frequency is examined for pipe flow and for freely cooling granular materials as well. Uncorrelated events lead to a Poisson distribution for the collision frequencies. In contrast, the fingerprint of the cooperative phenomena discussed here is a power-law decay of the probability for many collisions per unit time. Keywords: discrete element method, event driven simulations, clustering instability, arching, shock waves, power-law distribution, cooperative phenomena.
description: 27 pages 14 figs (2 color)
First Turtle Remains from the Middle-Late Jurassic Yanliao Biota, NE China
Creators: name: Haiyan Tong
Publisher: name: Mahasarakham University
Year: 2021
Subjects: Testudines, Xinjiangchelyidae, Yanliao Biota, NE China, Tiaojishan formation, late jurassic

description: Science Technology and Engineering Journal (STEJ), 7, 1, 1-11
title: Protothecosis in Dogs: A Narrative Review
Creators: name: Jagielski, Tomasz
name: Proskurnicka, Angelika
name: Iskra, Mateusz
name: Wronka, Sylwia
name: Bakuła, Zofia
name: Danesi, Patrizia
name: Rodrigues De Farias, Marconi
name: Ramos Portilho, Fábio Vinícius
name: Garcia Ribeiro, Márcio
name: Rösler, Uwe
name: Kano, Rui
name: Malik, Richard
Publisher: name: Freie Universität Berlin
Year: 2025
Subjects: subject: algae
subject: colitis
subject: cytb
subject: dog
subject: Prototheca spp.
subject: systemic infection
classificationCode: 630
subject: Landwirtschaft und verwandte Bereiche

description: Protothecosis is a rare and unusual disease that affects both humans and animals, including dogs. The causative agents are unicellular, achlorophyllous, “yeast-like” microalgae of the genus Prototheca (Trebouxiophyceae, Chlorophyta). Although usually saprophytic, Prototheca may, under conditions of immunologic compromise, become pathogenic and even lethal to the host. We present a synthesis of the current literature on protothecosis, with special emphasis on disease features in the dog. Five open-access scientific journal repositories were searched two times by two independent reviewers for original studies (including case reports, standard articles, and conference abstracts) pertaining to cases of protothecosis in dogs. Findings about protothecosis cases in dogs (e.g., animal metrics, type of infection, implemented treatment, and treatment outcome) were synthesized in independent data tables. Eighty studies describing 125 cases of protothecosis in dogs qualified for final analysis. Based on this investigation, protothecosis in dogs can be defined as an emerging disease that poses a serious challenge to the veterinary profession in terms of both diagnosis and management. In general, clinical signs and physical findings most often are referable to the gastrointestinal tract (n = 68; 54.4%). Yet the most common clinical manifestation in dogs is disseminated systemic infection (n = 84; 67.2%), including clinical signs referable to inflammation affecting more than one organ. We emphasize the complexity of Prototheca infection in dogs by summarizing clinical and laboratory findings from 125 cases of Prototheca infection in dogs published over the last half-century.
Extended corresponding-states behavior for particles with variable range attractions
Creators: name: Noro, Massimo G.
name: Frenkel, Daan
Publisher: name: arXiv
Year: 2000
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We propose an extension of the law of corresponding states that can be applied to systems - such as colloidal suspensions - that have widely different ranges of attractive interactions. We argue that, for such systems, the ``reduced'' second virial coefficient is a convenient parameter to quantify the effective range of attraction. This procedure allows us to give a simple definition of the effective range of attraction of potentials with different functional forms. The advantage of the present approach is that it allows us to estimate the relative location of the liquid-vapor and solid-fluid coexistence curves exclusively on basis of the knowledge of the pair-potential.
description: REVTeX, 5 pages, 2 figures
Visions of a generalized probability theory
Creators: name: Cuzzolin, Fabio
Publisher: name: arXiv
Year: 2018
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Artificial Intelligence (cs.AI)
subject: Probability (math.PR)
subject: FOS: Computer and information sciences
subject: FOS: Mathematics
subject: 60A99, 60D99, 62A99

description: In this Book we argue that the fruitful interaction of computer vision and belief calculus is capable of stimulating significant advances in both fields. From a methodological point of view, novel theoretical results concerning the geometric and algebraic properties of belief functions as mathematical objects are illustrated and discussed in Part II, with a focus on both a perspective 'geometric approach' to uncertainty and an algebraic solution to the issue of conflicting evidence. In Part III we show how these theoretical developments arise from important computer vision problems (such as articulated object tracking, data association and object pose estimation) to which, in turn, the evidential formalism is able to provide interesting new solutions. Finally, some initial steps towards a generalization of the notion of total probability to belief functions are taken, in the perspective of endowing the theory of evidence with a complete battery of estimation and inference tools to the benefit of all scientists and practitioners.
Not even 6 dB: Gaussian quantum illumination in thermal background
Creators: name: Volkoff, T. J.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: In analyses of target detection with Gaussian state transmitters in a thermal background, the thermal occupation is taken to depend on the target reflectivity in a way which simplifies the analysis of the symmetric quantum hypothesis testing problem. However, this assumption precludes comparison of target detection performance between an arbitrary transmitter and a vacuum state transmitter, i.e., ``detection without illumination'', which is relevant in a bright thermal background because a target can be detected by its optical shadow or some other perturbation of the background. Using a target-agnostic thermal environment leads to the result that the oft-claimed 6 dB possible reduction in the quantum Chernoff exponent for a two-mode squeezed vacuum transmitter over a coherent state transmitter in high-occupation thermal background is an unachievable limiting value, only occurring in a limit in which the target detection problem is ill-posed. Further analyzing quantum illumination in a target-agnostic thermal environment shows that a weak single-mode squeezed transmitter performs worse than ``no illumination'', which is explained by the noise-increasing property of reflected low-intensity squeezed light.
description: 14 pages, 2 figures
Collaborative Text Editing with Eg-walker: Better, Faster, Smaller
Creators: name: Gentle, J
name: Kleppmann, M
Publisher: name: ACM
Year: 2025
Subjects: 4606 Distributed Computing and Systems Software
46 Information and Computing Sciences

description: Collaborative text editing algorithms allow several users to concurrently modify a text file, and automatically merge concurrent edits into a consistent state. Existing algorithms fall in two categories: Operational Transformation (OT) algorithms are slow to merge files that have diverged substantially due to offline editing; CRDTs are slow to load and consume a lot of memory. We introduce Eg-walker, a collaboration algorithm for text that avoids these weaknesses. Compared to existing CRDTs, it consumes an order of magnitude less memory in the steady state, and loading a document from disk is orders of magnitude faster. Compared to OT, merging long-running branches is orders of magnitude faster. In the worst case, the merging performance of Eg-walker is comparable with existing CRDT algorithms. Eg-walker can be used everywhere CRDTs are used, including peer-to-peer systems without a central server. By offering performance that is competitive with centralised algorithms, our result paves the way towards the widespread adoption of peer-to-peer collaboration software.
Differential Cross Sections Measurement for the $pp\to dπ^+$ Reaction at 850 MeV/c
Creators: name: Betigeri, M.
name: Bojowald, J.
name: Budzanowski, A.
name: Chatterjee, A .
name: Ernst, J.
name: Freindl, L.
name: Frekers, D.
name: Garske, W.
name: Grewer, K.
name: Hamacher, A.
name: Ilieva, J.
name: Jarczyk, L.
name: Kilian, K.
name: Kliczewski, S.
name: Klimala, W.
name: Kolev, D.
name: Kutsarova, T.
name: Lieb, J.
name: Machner, H.
name: Magiera, A.
name: Nann, H.
name: Pentchev, L.
name: Plendl, H. S.
name: Protic, D.
name: Razen, B.
name: von Rossen, P.
name: Roy, B. J.
name: Siudak, R.
name: Strzalkowski, A.
name: Tsenov, R.
name: Zwoll, K.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: The present data support a large anisotropy in accordance with phase shift predictions and in contrast to another recent experiment.
description: 6 pages, latex, 4 figures
Effect of Lotus Petal (Nymphaea lotus) and Pollen (Nelumbo nucifera) on Chemical and Physical Properties of Gummy Jelly Lotus Flavor
Creators: name: Pornpachen Chuchird
Publisher: name: Mahasarakham University
Year: 2021
Subjects: Lotus, gummy, antioxidant activity, flavor

description: Science Technology and Engineering Journal (STEJ), 7, 1, 32-39
Natural Language Dataset Generation Framework for Visualizations Powered by Large Language Models
Creators: name: Ko, Hyung-Kwon
name: Jeon, Hyeon
name: Park, Gwanmo
name: Kim, Dae Hyun
name: Kim, Nam Wook
name: Kim, Juho
name: Seo, Jinwook
Publisher: name: arXiv
Year: 2023
Subjects: subject: Human-Computer Interaction (cs.HC)
subject: FOS: Computer and information sciences

description: We introduce VL2NL, a Large Language Model (LLM) framework that generates rich and diverse NL datasets using only Vega-Lite specifications as input, thereby streamlining the development of Natural Language Interfaces (NLIs) for data visualization. To synthesize relevant chart semantics accurately and enhance syntactic diversity in each NL dataset, we leverage 1) a guided discovery incorporated into prompting so that LLMs can steer themselves to create faithful NL datasets in a self-directed manner; 2) a score-based paraphrasing to augment NL syntax along with four language axes. We also present a new collection of 1,981 real-world Vega-Lite specifications that have increased diversity and complexity than existing chart collections. When tested on our chart collection, VL2NL extracted chart semantics and generated L1/L2 captions with 89.4% and 76.0% accuracy, respectively. It also demonstrated generating and paraphrasing utterances and questions with greater diversity compared to the benchmarks. Last, we discuss how our NL datasets and framework can be utilized in real-world scenarios. The codes and chart collection are available at https://github.com/hyungkwonko/chart-llm.
description: 22 pages, 5 figures
Additional file 1: of RNSCLC-PRSP software to predict the prognostic risk and survival in patients with resected T1-3N0â 2â M0 non-small cell lung cancer
Creators: name: Zhang, Yunkui
name: Li, YaoChen
name: Zhang, Rongsheng
name: Zhang, Yujie
name: Ma, Haitao
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer

description: Table S1. Variable codes and assignment methods of Cox proportional hazard regression model analysis of resected T1-3N0-2 M0 NSCLC. (DOCX 22 kb)
Chromosome Study of Hybrid Catfishes Clarias Nieuhofii ื C. Gariepinus (Teleostei: Clariidae): Revealed by Conventional Staining and Ag-NOR Banding Techniques
Creators: name: Samnao Saowakoon
Publisher: name: Mahasarakham University
Year: 2021
Subjects: C. nieuhofii, C. gariepinus, hybrid catfish, karyotype

description: Science Technology and Engineering Journal (STEJ), 7, 1, 40-48
Nanorobotics in Medicine: A Systematic Review of Advances, Challenges, and Future Prospects
Creators: name: Rajendran, Shishir
name: Sundararajan, Prathic
name: Awasthi, Ashi
name: Rajendran, Suraj
Publisher: name: arXiv
Year: 2023
Subjects: subject: Robotics (cs.RO)
subject: Tissues and Organs (q-bio.TO)
subject: FOS: Computer and information sciences
subject: FOS: Biological sciences

description: Nanorobotics offers an emerging frontier in biomedicine, holding the potential to revolutionize diagnostic and therapeutic applications through its unique capabilities in manipulating biological systems at the nanoscale. Following PRISMA guidelines, a comprehensive literature search was conducted using IEEE Xplore and PubMed databases, resulting in the identification and analysis of a total of 414 papers. The studies were filtered to include only those that addressed both nanorobotics and direct medical applications. Our analysis traces the technology's evolution, highlighting its growing prominence in medicine as evidenced by the increasing number of publications over time. Applications ranged from targeted drug delivery and single-cell manipulation to minimally invasive surgery and biosensing. Despite the promise, limitations such as biocompatibility, precise control, and ethical concerns were also identified. This review aims to offer a thorough overview of the state of nanorobotics in medicine, drawing attention to current challenges and opportunities, and providing directions for future research in this rapidly advancing field.
Increasing the representation accuracy of quantum simulations of chemistry without extra quantum resources
Creators: name: Takeshita, Tyler
name: Rubin, Nicholas C.
name: Jiang, Zhang
name: Lee, Eunseok
name: Babbush, Ryan
name: McClean, Jarrod R.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: Proposals for near-term experiments in quantum chemistry on quantum computers leverage the ability to target a subset of degrees of freedom containing the essential quantum behavior, sometimes called the active space. This approximation allows one to treat more difficult problems using fewer qubits and lower gate depths than would otherwise be possible. However, while this approximation captures many important qualitative features, it may leave the results wanting in terms of absolute accuracy (basis error) of the representation. In traditional approaches, increasing this accuracy requires increasing the number of qubits and an appropriate increase in circuit depth as well. Here we introduce a technique requiring no additional qubits or circuit depth that is able to remove much of this approximation in favor of additional measurements. The technique is constructed and analyzed theoretically, and some numerical proof of concept calculations are shown. As an example, we show how to achieve the accuracy of a 20 qubit representation using only 4 qubits and a modest number of additional measurements for a simple hydrogen molecule. We close with an outlook on the impact this technique may have on both near-term and fault-tolerant quantum simulations.
Sub-Poissonian shot noise in non-degenerate diffusive conductors
Creators: name: Beenakker, C. W. J.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: A theory is presented for the universal reduction of shot noise by Coulomb repulsion, which was observed in computer simulations of a disordered non-degenerate electron gas by Gonzalez et al. (cond-mat/9803372). The universality of the reduction below the uncorrelated value is explained as a feature of the high-voltage regime of space-charge limited conduction. The reduction factor depends on the dimensionality d of the density of states, being close but not quite equal to 1/d in two and three dimensions.
description: revised in response to referee reports; 3 pages, no figures
On the dynamical stability of copper-doped lead apatite
Creators: name: Kim, Sun-Woo
name: Wang, Kang
name: Chen, Siyu
name: Conway, Lewis J.
name: Pascut, G. Lucian
name: Errea, Ion
name: Pickard, Chris J.
name: Monserrat, Bartomeu
Publisher: name: arXiv
Year: 2023
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: The recent claim of room temperature superconductivity in a copper-doped lead apatite compound, called LK-99, has sparked remarkable interest and controversy. Subsequent experiments have largely failed to reproduce the claimed superconductivity, while theoretical works have identified multiple key features including strong electronic correlation, structural instabilities, and dopability constraints. A puzzling claim of several recent theoretical studies is that both parent and copper-doped lead apatite structures are dynamically unstable at the harmonic level, questioning decades of experimental reports of the parent compound structures and the recently proposed copper-doped structures. In this work, we demonstrate that both parent and copper-doped lead apatite structures are dynamically stable at room temperature. Anharmonic phonon-phonon interactions play a key role in stabilizing some copper-doped phases, while most phases are largely stable even at the harmonic level. We also show that dynamical stability depends on both volume and correlation strength, suggesting controllable ways of exploring the copper-doped lead apatite structural phase diagram. Our results fully reconcile the theoretical description of the structures of both parent and copper-doped lead apatite with experiment.
description: 4 figures + Supplementary Information, published version
title: Complexity-Constrained Quantum Thermodynamics
Creators: name: Munson, Anthony
name: Kothakonda, Naga Bhavya Teja
name: Haferkamp, Jonas
name: Yunger Halpern, Nicole
name: Eisert, Jens
name: Faist, Philippe
Publisher: name: Freie Universität Berlin
Year: 2025
Subjects: subject: Computational complexity
subject: Information thermodynamics
subject: Thermodynamics of computation
classificationCode: 530
subject: Physik

description: Quantum complexity measures the difficulty of realizing a quantum process, such as preparing a state or implementing a unitary. We present an approach to quantifying the thermodynamic resources required to implement a process if the process’s complexity is restricted. We focus on the prototypical task of information erasure, or Landauer erasure, wherein an 𝑛-qubit memory is reset to the all-zero state. We show that the minimum thermodynamic work required to reset an arbitrary state in our model, via a complexity-constrained process, is quantified by the state’s complexity entropy. The complexity entropy therefore quantifies a trade-off between the work cost and complexity cost of resetting a state. If the qubits have a nontrivial (but product) Hamiltonian, the optimal work cost is determined by the complexity relative entropy. The complexity entropy quantifies the amount of randomness a system appears to have to a computationally limited observer. Similarly, the complexity relative entropy quantifies such an observer’s ability to distinguish two states. We prove elementary properties of the complexity (relative) entropy. In a random circuit—a simple model for quantum chaotic dynamics—the complexity entropy transitions from zero to its maximal value around the time corresponding to the observer’s computational-power limit. Also, we identify information-theoretic applications of the complexity entropy. The complexity entropy quantifies the resources required for data compression if the compression algorithm must use a restricted number of gates. We further introduce a complexity conditional entropy, which arises naturally in a complexity-constrained variant of information-theoretic decoupling. Assuming that this entropy obeys a conjectured chain rule, we show that the entropy bounds the number of qubits that one can decouple from a reference system, as judged by a computationally bounded referee. Overall, our framework extends the resource-theoretic approach to thermodynamics to integrate a notion of time, as quantified by complexity.
The Magic of Being Exceptional
Creators: name: Marrani, Alessio
name: Truini, Piero
name: Rios, Michael
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: Rings and Algebras (math.RA)
subject: Representation Theory (math.RT)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: Starting from the Jordan algebraic interpretation of the "Magic Star" embedding within the exceptional sequence of simple Lie algebras, we exploit the so-called spin factor embedding of rank-3 Jordan algebras and its consequences on the Jordan algebraic Lie symmetries, in order to provide another perspective on the origin of the "Exceptional Periodicity" (EP) and its "Magic Star" structure. We also highlight some properties of the special class of Vinberg's rank-3 (dubbed exceptional) T-algebras, appearing on the tips of the "Magic Star" projection of EP(-generalized, finite-dimensional, exceptional) algebras.
description: 1+8 pages, 2 figures, 3 tables. Presented by AM at the 32nd International Colloquium on Group Theoretical Methods in Physics, Prague, July 9-13, 2018
title: Mapping red algal blooms and their albedo-reducing effect on seasonal snowfields at Hardangervidda, Southern Norway
Creators: name: Chevrollier, Lou-Anne
name: Wehrle, Adrien
name: Cook, Joseph M.
name: Guillet, Gregoire
name: Benning, Liane G.
name: Anesio, Alexandre M.
name: Tranter, Martyn
Publisher: name: Freie Universität Berlin
Year: 2025
Subjects: subject: snow
subject: albedo
subject: uncrewed aerial vehicle
subject: algae
subject: blooms
classificationCode: 550
subject: Geowissenschaften

description: Red snow algae bloom at the surface of snowfields worldwide, and their detection is relevant for ecological, biogeochemical and mass balance studies. In this study, we co-located RGB imagery acquired with a light-weight Uncrewed Aerial Vehicle (UAV) to 129 hyperspectral reflectance spectra from which the snow surface properties were retrieved, thereby enabling high-resolution aerial mapping of algal properties. We present maps of red snow algae abundance and albedo reducing effect over ∼ 9700 m2 of seasonal snowfields across Hardangervidda, Southern Norway, in July and August 2023. The average albedo reducing effect of the algae over the entire area was 0.012 ± 0.005, and attained 0.028 ± 0.004 on a snowfield of ∼ 710 m2. Across snow surfaces with visible blooms only, the algal albedo reducing effect was 0.045 ± 0.003, equivalent to an additional ∼ 3 mm of daily melting under local illumination conditions, and aggregating to 5,500 ± 2,300 kg of daily snowmelt. The intensity and spatial coverage of surface algal blooms were very variable between and within the individual snowfields. Analysis of the UAV imagery suggests that multiple small and distributed samples are at least twice more likely to yield representative estimates of the average snow algal concentration of a snowfield compared to fewer, larger samples. Our study demonstrates the potential of low-cost and easy to deploy UAVs for red snow algal monitoring at the cm to sub-cm scale, which can be used to better understand their spatial ecology and role in albedo reduction.
Symbol Detection for Coarsely Quantized OTFS
Creators: name: He, Junwei
name: Zhang, Haochuan
name: Dong, Chao
name: Zhu, Huimin
Publisher: name: arXiv
Year: 2023
Subjects: subject: Information Theory (cs.IT)
subject: Signal Processing (eess.SP)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: This paper explicitly models a coarse and noisy quantization in a communication system empowered by orthogonal time frequency space (OTFS) for cost and power efficiency. We first point out, with coarse quantization, the effective channel is imbalanced and thus no longer able to circularly shift the transmitted symbols along the delay-Doppler domain. Meanwhile, the effective channel is non-isotropic, which imposes a significant loss to symbol detection algorithms like the original approximate message passing (AMP). Although the algorithm of generalized expectation consistent for signal recovery (GEC-SR) can mitigate this loss, the complexity in computation is prohibitively high, mainly due to an dramatic increase in the matrix size of OTFS. In this context, we propose a low-complexity algorithm that incorporates into the GEC-SR a quick inversion of quasi-banded matrices, reducing the complexity from a cubic order to a linear order while keeping the performance at the same level.
Cascaded V-Net using ROI masks for brain tumor segmentation
Creators: name: Casamitjana, Adrià
name: Catà, Marcel
name: Sánchez, Irina
name: Combalia, Marc
name: Vilaplana, Verónica
Publisher: name: arXiv
Year: 2018
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Artificial Intelligence (cs.AI)
subject: Computers and Society (cs.CY)
subject: Machine Learning (cs.LG)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: In this work we approach the brain tumor segmentation problem with a cascade of two CNNs inspired in the V-Net architecture \cite{VNet}, reformulating residual connections and making use of ROI masks to constrain the networks to train only on relevant voxels. This architecture allows dense training on problems with highly skewed class distributions, such as brain tumor segmentation, by focusing training only on the vecinity of the tumor area. We report results on BraTS2017 Training and Validation sets.
description: Third International Workshop, BrainLes 2017, Held in Conjunction with MICCAI 2017, Quebec City, QC, Canada, September 14, 2017, Revised Selected Papers
Directed Flow of $Λ$-Hyperons in 2-6 AGeV Au+Au Collisions
Creators: name: Chung, P.
name: Ajitanand, N. N.
name: Alexander, J. M.
name: Anderson, M.
name: Best, D.
name: Brady, F. P.
name: Case, T.
name: Caskey, W.
name: Cebra, D.
name: Chance, J. L.
name: Cole, B.
name: Crowe, K.
name: Das, A.
name: Draper, J. E.
name: Gilkes, M. L.
name: Gushue, S.
name: Heffner, M.
name: Hirsch, A. S.
name: Hjort, E. L.
name: Huo, L.
name: Justice, M.
name: Kaplan, M.
name: Keane, D.
name: Kintner, J. C.
name: Klay, J.
name: Krofcheck, D.
name: Lacey, R. A.
name: Lauret, J.
name: Lisa, M. A.
name: Liu, H.
name: Liu, Y. M.
name: McGrath, R.
name: Milosevich, Z.
name: Odyniec, G.
name: Olson, D. L.
name: Panitkin, S. Y.
name: Pinkenburg, C.
name: Porile, N. T.
name: Rai, G.
name: Ritter, H. G.
name: Romero, J. L.
name: Scharenberg, R.
name: Schroeder, L.
name: Srivastava, B.
name: BStone, N. T.
name: Symons, T. J. M.
name: Wienold, T.
name: Whitfield, R. Witt J.
name: Wood, L.
name: Zhang, W. N.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: Directed flow measurements for $Λ$-hyperons are presented and compared to those for protons produced in the same Au+Au collisions (2, 4, and 6 AGeV; $b < 5 - 6$ fm). The measurements indicate that $Λ$-hyperons flow consistently in the same direction and with smaller magnitudes than those of protons. Such a strong positive flow [for $Λ$s] has been predicted in calculations which include the influence of the $Λ$-nucleon potential. The experimental flow ratio $Λ$/p is in qualitative agreement with expectations ($\sim 2/3$) from the quark counting rule at 2 AGeV but is found to decrease with increasing beam energy.
description: 5 pages including 4 Figs. Submitted to Phys. Rev. Lett
Additional file 1: of Classification of the human THAP protein family identifies an evolutionarily conserved coiled coil region
Creators: name: Hiral Sanghavi
name: Sairam Mallajosyala
name: Majumdar, Sharmistha
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Figure S1. Amino acids are represented as (a) a, d (hydrophobic); e, g (charged); b, c, f (polar) (b) Hydrophobic (Grey circles), Charged (textured circles), Polar (white circles). Figure S2. The color coding in Jalview [47] is described in the legend for Fig. 1. Figure S3. (a) The Multiple Sequence alignment was generated using CLUSTAL OMEGA, which represents conserved amino acid residues by an asterisk (*) mark and similarly charged amino acid residues by a colon (:). The most conserved region in all twelve THAP proteins is the amino terminal THAP domain, highlighted in grey. No conservation is found when the predicted alpha helical regions of (b) sTHAP with mTHAP (c) sTHAP with lTHAP (d) mTHAP with lTHAP protein groups are aligned with each other. The Multiple Sequence Alignments for Figures S3b, c and d were generated using CLUSTAL OMEGA and visualized using Jalview. The color coding in Jalview is described in the legend for Fig. 1. Figure S4. Protein models generated for (a) Full length THAP protein (b) Corresponding predicted alpha helical region. I TASSER results were viewed using VMD, selecting Ribbon model for secondary structure of proteins with alpha helix (purple), 310 helix (blue), Î - helix (red), beta sheet (yellow), turn (cyan) and coils (white). Figure S5. Superposition of THAP7 (green), THAP8 (blue), THAP11 (red). Figure S6. The reported crystal structure of THAP11 (yellow) is overlapped (using PyMOL) with the structure of the helical region of THAP11 (cyan) predicted using I TASSER. Table S1. Leucine content in THAP proteins and their predicted alpha helical regions. Table S2. LOGICOIL and Multicoil predicts higher order oligomer formation. Table S3. NLSmapper predicts NLS in THAP0, THAP1, THAP2, THAP4, THAP5, THAP9. The predicted NLS regions in THAP1 and THAP9 overlap with the predicted coiled coil regions of the respective proteins. (DOCX 2200 kb)
A New Report on Karyological Analysis of the Jewel-Beetle, Sternocera ruficornis (Coleoptera, Buprestidae) from Thailand
Creators: name: Pacharaporn Chaiyasan
Publisher: name: Mahasarakham University
Year: 2021
Subjects: Jewel-beetles, sternocera ruficornis, karyotype, Ag-NOR banding

description: Science Technology and Engineering Journal (STEJ), 7, 1, 49-57
The regime of applicability of Israel-Stewart hydrodynamics
Creators: name: Wagner, David
name: Gavassino, Lorenzo
Publisher: name: arXiv
Year: 2023
Subjects: subject: Nuclear Theory (nucl-th)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Using analytical tools from linear response theory, we systematically assess the accuracy of several microscopic derivations of Israel-Stewart hydrodynamics near local equilibrium. This allows us to "rank" the different approaches in decreasing order of accuracy as follows: Inverse Reynolds Dominance (IReD), Denicol-Niemi-Molnár-Rischke (DNMR), second-order gradient expansion, and 14-moment approximation. We find that IReD theory is far superior to Navier-Stokes, being very accurate both in the asymptotic regime (i.e., for slow processes) and in the transient regime (i.e., on timescales comparable to the relaxation time). Also, the high accuracy of DNMR is confirmed, but neglecting second-order terms in the Knudsen number, which would render the equations parabolic, introduces serious systematic errors. Finally, in most cases, the second-order gradient expansion (a.k.a. non-resummed BRSSS) is found to be more inaccurate than Navier-Stokes in the transient regime. Overall, this analysis shows that Israel-Stewart hydrodynamics is falsifiable, and the relaxation time is observable, shedding new light on the debate on the viability of transient hydrodynamics as a well-defined physical theory distinguished from Navier-Stokes.
description: 21 pages, 12 figures
Additional file 2: of Regional lymphadenectomy vs. extended lymphadenectomy for hilar cholangiocarcinoma (Relay-HC trial): study protocol for a prospective, multicenter, randomized controlled trial
Creators: name: He, Min
name: Xu, Xinsen
name: Feng, Hao
name: Chen, Wei
name: Liu, Houbao
name: Zhang, Yongjie
name: Wang, Jianming
name: Geng, Zhimin
name: Qiu, Yudong
name: Duan, Weidong
name: Li, Xiangcheng
name: Zhi, Xuting
name: Zhu, Weihua
name: Li, Fuyu
name: Li, Jiangtao
name: Li, Shengping
name: He, Yu
name: Quan, Zhiwei
name: Wang, Jian
Publisher: name: figshare
Year: 2019
Subjects: Mathematical Sciences not elsewhere classified
Developmental Biology
Cancer
Science Policy

description: CONSORT 2010 checklist of information to include when reporting a randomized trial. (DOC 217 kb)
Magnetization plateau in a two-dimensional multiple-spin exchange model
Creators: name: Momoi, Tsutomu
name: Sakamoto, Harumi
name: Kubo, Kenn
Publisher: name: arXiv
Year: 1998
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We study a multiple-spin exchange model on a triangular lattice, which is a possible model for low-density solid 3He films. Due to strong competitions between ferromagnetic three-spin exchange and antiferromagnetic four-spin one, the ground states are highly degenerate in the classical limit. At least 2^{L/2}-fold degeneracy exists on the L*L triangular lattice except for the SO(3) symmetry. In the magnetization process, we found a plateau at m/m_{sat}=1/2, in which the ground state is "uuud state" (a collinear state with four sublattices). The 1/2-plateau appears due to the strong four-spin exchange interaction. This plateau survives against both quantum and thermal fluctuations. Under a magnetic field which realizes the "uuud" ordered state, a phase transition occurs at a finite temperature. We predict that low-density solid 3He thin films may show the 1/2-plateau in the magnetization process. Experimental observation of the plateau will verify strength of the four-spin exchange. It is also discussed that this magnetization plateau can be understood as an insulating-conducting transition in a particle picture.
description: 10 pages, RevTeX, 12 figures, added a reference and corrected typos, to be published in Phys.Rev.B (01 APR 99)
Colloidal Properties of the Residue of Rice Wine made from Thai Purpleberry Rice and its Effects as a Stabilising Agent in Foams
Creators: name: Pravinata, Linda
Publisher: name: Mahasarakham University
Year: 2021
Subjects: Rice wine residue, Thai purple berry rice, stabilizing agent, foam

description: Science Technology and Engineering Journal (STEJ), 7, 1, 58-67
Raw Data（HNF4A ameliorates acute liver failure by inhibiting NCOA4-mediated ferritinophagy）.rar
Creators: name: Yu, Weiyan
Publisher: name: figshare
Year: 2025
Subjects: classificationCode: 310199
subject: Biochemistry and cell biology not elsewhere classified
classificationCode: 310113
subject: Synthetic biology

description: This study identified the HNF4A - NCOA4 axis and ferritinophagy as crucial factors in hepatocyte ferroptosis and the pathogenesis of acute liver failure (ALF). These findings suggest that the HNF4A - NCOA4 axis could be a potential therapeutic target for ALF.
Convex Estimation of Sparse-Smooth Power Spectral Densities from Mixtures of Realizations with Application to Weather Radar
Creators: name: Kuroda, Hiroki
name: Kitahara, Daichi
name: Yoshikawa, Eiichi
name: Kikuchi, Hiroshi
name: Ushio, Tomoo
Publisher: name: arXiv
Year: 2023
Subjects: subject: Signal Processing (eess.SP)
subject: Optimization and Control (math.OC)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Mathematics

description: In this paper, we propose a convex optimization-based estimation of sparse and smooth power spectral densities (PSDs) of complex-valued random processes from mixtures of realizations. While the PSDs are related to the magnitude of the frequency components of the realizations, it has been a major challenge to exploit the smoothness of the PSDs, because penalizing the difference of the magnitude of the frequency components results in a nonconvex optimization problem that is difficult to solve. To address this challenge, we design the proposed model that jointly estimates the complex-valued frequency components and the nonnegative PSDs, which are respectively regularized to be sparse and sparse-smooth. By penalizing the difference of the nonnegative variable that estimates the PSDs, the proposed model can enhance the smoothness of the PSDs via convex optimization. Numerical experiments on the phased array weather radar, an advanced weather radar system, demonstrate that the proposed model achieves superior estimation accuracy compared to existing sparse estimation models, regardless of whether they are combined with a smoothing technique as a post-processing step or not.
Investigating the Transition Region Explosive Events and Their Relationship to Network Jets
Creators: name: Chen, Yajie
name: Tian, Hui
name: Huang, Zhenghua
name: Peter, Hardi
name: Samanta, Tanmoy
Publisher: name: arXiv
Year: 2019
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Recent imaging observations with the Interface Region Imaging Spectrograp (IRIS) have revealed prevalent intermittent jets with apparent speeds of 80--250 km~s$^{-1}$ from the network lanes in the solar transition region (TR). On the other hand, spectroscopic observations of the TR lines have revealed the frequent presence of highly non-Gaussian line profiles with enhanced emission at the line wings, often referred as explosive events (EEs). Using simultaneous imaging and spectroscopic observations from IRIS, we investigate the relationship between EEs and network jets. We first identify EEs from the Si~{\sc{iv}}~1393.755 Å line profiles in our observations, then examine related features in the 1330 Å slit-jaw images. Our analysis suggests that EEs with double peaks or enhancements in both wings appear to be located at either the footpoints of network jets, or transient compact brightenings. These EEs are most likely produced by magnetic reconnection. We also find that EEs with enhancements only at the blue wing are mainly located on network jets, away from the footpoints. These EEs clearly result from the superposition of the high-speed network jets on the TR background. In addition, EEs showing enhancement only at the red wing of the line are often located around the jet footpoints, possibly caused by the superposition of reconnection downflows on the background emission. Moreover, we find some network jets that are not associated with any detectable EEs. Our analysis suggests that some EEs are related to the birth or propagation of network jets, and that others are not connected to network jets.
description: 9 figures; to appear in ApJ
Anti-flow of K$^0_s$ Mesons in 6 AGeV Au + Au Collisions
Creators: name: Chung, P.
name: Ajitanand, N. N.
name: Alexander, J. M.
name: Anderson, M.
name: Best, D.
name: Brady, F. P.
name: Case, T.
name: Caskey, W.
name: Cebra, D.
name: Chance, J. L.
name: Cole, B.
name: Crowe, K.
name: Das, A.
name: Draper, J. E.
name: Gilkes, M. L.
name: Gushue, S.
name: Heffner, M.
name: Hirsch, A. S.
name: Hjort, E. L.
name: Huo, L.
name: Justice, M.
name: Kaplan, M.
name: Keane, D.
name: Kintner, J. C.
name: Klay, J.
name: Krofcheck, D.
name: Lacey, R. A.
name: Lauret, J.
name: Lisa, M. A.
name: Liu, H.
name: Liu, Y. M.
name: McGrath, R.
name: Milosevich, Z.
name: Odyniec, G.
name: Olson, D. L.
name: Panitkin, S. Y.
name: Pinkenburg, C.
name: Porile, N. T.
name: Rai, G.
name: Ritter, H. G.
name: Romero, J. L.
name: Scharenberg, R.
name: Schroeder, L.
name: Srivastava, B.
name: BStone, N. T.
name: Symons, T. J. M.
name: Wienold, T.
name: Whitfield, R. Witt J.
name: Wood, L.
name: Zhang, W. N.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: We have measured the sideward flow of neutral strange ($K^0_s$) mesons in 6 AGeV Au + Au collisions. A prominent anti-flow signal is observed for an impact parameter range (b $\lesssim 7$ fm) which spans central and mid-central events. Since the $K^0_s$ scattering cross section is relatively small in nuclear matter, this observation suggests that the in-medium kaon vector potential plays an important role in high density nuclear matter.
description: 5 pages, including 3 figs
title: Shedding light on dark taxa: exploring a cryptic diversity of parasitoid wasps affected by artificial light at night
Creators: name: Dietenberger, Manuel
name: Jechow, Andreas
name: Sann, Manuela
name: Hölker, Franz
Publisher: name: Freie Universität Berlin
Year: 2025
Subjects: subject: Insect decline
subject: Light pollution
subject: Parasitoids
subject: Street lights
subject: Artificial light at night
subject: Shielding
subject: Biological control
classificationCode: 570
subject: Biowissenschaften; Biologie

description: Artificial light at night (ALAN) contributes to the globally observed insect decline. ALAN attracts nocturnal insects from their native ecosystems and disturbs their functions in the food web. Road lights in this context are ubiquitous and relevant ALAN sources that are often not considered in conservation approaches. In a previous study we showed that shielded LED road lights are suited to be part of conservation measures by effectively reducing the attraction of nocturnal insects. Here we show that this positive effect holds true for parasitoid wasps in an experimental BACI design (Before-After-Control-Impact). Combining morphological with molecular and phylogenetic analyses, we identified 106 individuals (62 morphotypes) of a minimum of 45 genera out of 13 Hymenoptera families. We were able to identify 21 species, 11 of which are newly reported in Southern Germany (Baden-Württemberg). Further combining knowledge on life history and host appearance from our data and the literature, we discuss potential impacts of ALAN ranging from an influence on nocturnal pollination via parasitoid pressure on moth species and biological control of invasive pest species to tritrophic interactions between primary and secondary parasitoids. We conclusively think that shielded LED road lights will reduce the ecological impact of ALAN on parasitoid wasps in a large and undescribed number of taxa with different host associations, likely affecting associated ecosystem functions such as biological control.
Mean-Field Approximations to the Longest Common Subsequence Problem
Creators: name: de Monvel, J. Boutet
Publisher: name: arXiv
Year: 1998
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: The Longest Common Subsequence (LCS) problem is a fundamental problem of sequence comparison. A natural approximation to this problem is a model in which every pairs of letters of two ``sequences'' are matched independently of the other pairs with probability 1/S, $S$ representing the size of the alphabet. This model is analogous to a mean field version of the LCS problem, which can be solved with a cavity approach (Eur. Phys. J. B 7-2(1999),pp. 293-308). We refine here this approximation by incorporating in a systematic way correlations among the matches in the cavity calculation. We obtain a series of closer and closer approximations to the LCS problem, which we quantify in the large $S$ limit, both with a perturbative approach and by Monte-Carlo simulations. We find that, as it happens in the expansion around mean-field for other disordered systems, the corrections to our approximations depend upon long-ranged correlation effects which render the large $S$ expansion non-perturbative.
description: 5 pages, 2 figures, remanied version, more details given in section IV
Continuous quantum measurement and Itô formalism
Creators: name: Diósi, Lajos
Publisher: name: arXiv
Year: 2018
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: A new quantum-stochastic differential calculus is derived for representing continuous quantum measurement of the position operator. Closed nonlinear quantum-stochastic differential equation is given for the quantum state of the observed particle. Possible physical realization of continuous position measurement is constructed.
description: 14pp, What's now called Stochastic Master Equation of quantum monitoring
title: FIORA: Local neighborhood-based prediction of compound mass spectra from single fragmentation events
Creators: name: Nowatzky, Yannek
name: Russo, Francesco Friedrich
name: Lisec, Jan
name: Kister, Alexander
name: Reinert, Knut
name: Muth, Thilo
name: Benner, Philipp
Publisher: name: Freie Universität Berlin
Year: 2025
Subjects: subject: Machine learning
subject: Mass spectrometry
subject: Metabolomics
subject: Method development
classificationCode: 570
subject: Biowissenschaften; Biologie

description: Non-targeted metabolomics holds great promise for advancing precision medicine and biomarker discovery. However, identifying compounds from tandem mass spectra remains a challenging task due to the incomplete nature of spectral reference libraries. Augmenting these libraries with simulated mass spectra can provide the necessary references to resolve unmatched spectra, but generating high-quality data is difficult. In this study, we present FIORA, an open-source graph neural network designed to simulate tandem mass spectra. Our main contribution lies in utilizing the molecular neighborhood of bonds to learn breaking patterns and derive fragment ion probabilities. FIORA not only surpasses state-of-the-art fragmentation algorithms, ICEBERG and CFM-ID, in prediction quality, but also facilitates the prediction of additional features, such as retention time and collision cross section. Utilizing GPU acceleration, FIORA enables rapid validation of putative compound annotations and large-scale expansion of spectral reference libraries with high-quality predictions.