cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
MOESM1 of Vertical transport and plant uptake of nanoparticles in a soil mesocosm experiment
Creators: name: Gogos, Alexander
name: Moll, Janine
name: Klingenfuss, Florian
name: Heijden, Marcel
name: Fahmida Irin
name: Green, Micah
name: Zenobi, Renato
name: Bucheli, Thomas
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 1. Figure S1. Bright field TEM micrographs and size information of TiO2 particles. Figure S2. MIH calibration curve. Figure S3. Dependence of the Îś-potential [mV] of TiO2 particles on pH. Figure S4. Transmission electron microscopy micrographs of a potential CNT structure. Figure S5. Raman spectra of the employed MWCNT powder and plant samples. Text. Composition of fertilizers, MWCNT analysis of soil with CTO-375. Detailed sample preparation steps of root cross sections for analysis using transmission electron microscopy.
Vietnamosasa darlacensis Nguyen 1990
Creators: name: HAEVERMANS, Thomas
name: NGUYEN, Bich Loan
name: GURGAND, Jacques
name: HAEVERMANS, Agathe
name: DRANSFIELD, Soejatmi
name: DIEP, My Hanh
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Poales
Poaceae
Vietnamosasa
Vietnamosasa darlacensis

description: Vietnamosasa darlacensis Nguyen (1990: 221).
Type:— VIETNAM. Đắk Nông: Yok Don, 12°52’49”N, 107°48’01”E, 200 m elevation, 30 May 2012, My Hanh DIEP 285 (neotype here designated: P02280067!; isoneotypes P02280069!, P02280068!, P02280066!, P02280065!, P02280064!, P02280063!; K!, KUN!, MO!, SING!, RUPP!, VNM!).
Note:— The missing holotype citation is as follows: Vietnam. Darlac Province [actual Đắk L ắk + Đắk Nông provinces]: silva montana, 600-1500 m elevation, 4 September 1973, Nguyen Vu Can s.n. (HNF [actual VNF, lost]). Original diagnosis: “Affinitas. A specie proxima V. ciliata (A.Camus) Nguyen paleis apice rotundatis differ.”
The original specimen cannot be located in the herbaria where it may have been transferred for original study by Mrs. Nguyen (LE & HNF). We cannot exclude the possibility that the type is destroyed. No original reference specimen exists and no illustration of the taxon has ever been published. In order to ensure accurate application of the name, we decided to designate a neotype based on a new collection of the only taxon matching the protologue that was growing in the type locality. The scans of the specimen, as well as pictures of the plant taken in the field will be made available on Paris SONNERAT herbarium database (http:// coldb.mnhn.fr).
description: Published as part of HAEVERMANS, Thomas, NGUYEN, Bich Loan, GURGAND, Jacques, HAEVERMANS, Agathe, DRANSFIELD, Soejatmi & DIEP, My Hanh, 2013, Clearing up Vietnamosasa (Poaceae, Bambusoideae): typification and nomenclature of a distinctive paleotropical bamboo genus, pp. 57-60 in Phytotaxa 137 (1) on page 58, DOI: 10.11646/phytotaxa.137.1.7, http://zenodo.org/record/5086317
Depressorotunda Kontschan 2010
Creators: name: Halliday, R. B.
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Mesostigmata
Uropodidae
Depressorotunda

description: Depressorotunda Kontschán, 2010
Depressorotunda Kontschán, 2010c: 1462.
Type species Depressorotunda malayana Kontschán, 2010c: 1462, by original designation.
description: Published as part of Halliday, R. B., 2015, Catalogue of genera and their type species in the mite Suborder Uropodina (Acari: Mesostigmata), pp. 101-147 in Zootaxa 3972 (2) on page 111, DOI: 10.11646/zootaxa.3972.2.1, http://zenodo.org/record/232777
Additional file 3: of Microalgal triacylglycerides production in outdoor batch-operated tubular PBRs
Creators: name: Benvenuti, Giulia
name: Rouke Bosma
name: Klok, Anne
name: Ji, Fang
name: Packo Lamers
name: Barbosa, Maria
name: RenĂŠ Wijffels
Publisher: name: Figshare
Year: 2015
Subjects: subject: Pharmacology
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology

description: Daily light intensity during the outdoor runs.
Neural responses to acute stress predict chronic stress perception in daily life over 13 months
Creators: name: Giglberger, Marina
name: Peter, Hannah L.
name: Henze, Gina-Isabelle
name: Kraus, Elisabeth
name: Bärtl, Christoph
name: Konzok, Julian
name: Kreuzpointner, Ludwig
name: Kirsch, Peter
name: Kudielka, Brigitte M.
name: Wüst, Stefan
Publisher: name: Universität Regensburg
Year: 2023
Subjects: subject: 150 Psychologie
subject: 610 Medizin

description: The importance of amygdala, hippocampus, and medial prefrontal cortex (mPFC) for the integration of neural, endocrine, and affective stress processing was shown in healthy participants and patients with stress-related disorders. The present manuscript which reports on one study-arm of the LawSTRESS project, aimed at investigating the predictive value of acute stress responses in these regions for biopsychological consequences of chronic stress in daily life. The LawSTRESS project examined law students either in preparation for their first state examination (stress group [SG]) or in the mid-phase of their study program (control group [CG]) over 13 months. Ambulatory assessments comprising perceived stress measurements and the cortisol awakening response (CAR) were administered on six sampling points (t1 = − 1 year, t2 = − 3 months, t3 = − 1 week, t4 = exam, t5 =  + 1 week, t6 =  + 1 month). In a subsample of 124 participants (SG: 61; CG: 63), ScanSTRESS was applied at baseline. In the SG but not in the CG, amygdala, hippocampus, and (post-hoc analyzed) right mPFC activation changes during ScanSTRESS were significantly associated with the trajectory of perceived stress but not with the CAR. Consistent with our finding in the total LawSTRESS sample, a significant increase in perceived stress and a blunted CAR over time could be detected in the SG only. Our findings suggest that more pronounced activation decreases of amygdala, hippocampus, and mPFC in response to acute psychosocial stress at baseline were related to a more pronounced increase of stress in daily life over the following year.
Vietnamosasa pusilla Nguyen 1990
Creators: name: HAEVERMANS, Thomas
name: NGUYEN, Bich Loan
name: GURGAND, Jacques
name: HAEVERMANS, Agathe
name: DRANSFIELD, Soejatmi
name: DIEP, My Hanh
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Poales
Poaceae
Vietnamosasa
Vietnamosasa pusilla

description: Vietnamosasa pusilla (A.Chev. & A.Camus) Nguyen (1990: 222).
Basionym: Arundinaria pusilla Chevalier & Camus (1921: 450).
Type:— VIETNAM. Annam: Lang bian, Dran, 1000-1200 m elevation, A. Chevalier 40600 (lectotype here designated: P02581779!).
Neomicrocalamus pusillus (A.Chev. & A.Camus) Demoly (1995: 14).
Note:—The syntype series cited in the protologue mentions three numbers, Chevalier 40330, 40508 and 40600. Of these, only Chevalier 40600 was found at the Paris herbarium; the type folder also contained a series of plants bearing the number Chevalier 40506. The discrepancy between the collection number of one of the syntypes published in the original description “ Chevalier 40508 ” and the only Vietnamosasa specimens found at P bearing a Chevalier label (“ Chevalier 40506 ”) may be a typographic error in the original publication. However, as we cannot locate the specimens labeled Chevalier 40330, we cannot exclude the possibility that Chevalier 40508 does exist and that the specimen labeled Chevalier 40506 was not intended to be part of the original syntype series by the authors. We thus choose the only available unambiguous specimen, Chevalier 40600, as the lectotype.
description: Published as part of HAEVERMANS, Thomas, NGUYEN, Bich Loan, GURGAND, Jacques, HAEVERMANS, Agathe, DRANSFIELD, Soejatmi & DIEP, My Hanh, 2013, Clearing up Vietnamosasa (Poaceae, Bambusoideae): typification and nomenclature of a distinctive paleotropical bamboo genus, pp. 57-60 in Phytotaxa 137 (1) on page 59, DOI: 10.11646/phytotaxa.137.1.7, http://zenodo.org/record/5086317
Effects of storage and toothbrush simulation on Martens hardness of CAD/CAM, hand-cast, thermoforming, and 3D-printed splint materials
Creators: name: Rosentritt, Martin
name: Hickl, Verena
name: Rauch, Angelika
name: Schmidt, Michael
Publisher: name: Universität Regensburg
Year: 2023
Subjects: subject: Hardness · Martens · Elastic behavior · Viscoelastic parameters · Creep
subject: 610 Medizin

description: Objectives
To investigate Martens hardness parameters of splint materials after storage in liquids and toothbrush simulation.
Materials and methods
Ten specimens per material and group were fabricated (hand-cast CAST, thermoformed TF, CAD/CAM-milled CAM, 3D-printed PS, PL, PK, PV), stored in air, water, coffee, red wine, and cleaning tablets and investigated after fabrication, 24 h, 2- and 4-week storage or toothbrushing. Martens hardness (HM), indentation hardness (HIT), indentation modulus (EIT), the elastic part of indentation work (ηIT), and indentation creep (CIT) were calculated (ISO 14577-1). Statistics: ANOVA, Bonferroni post hoc test, between-subjects effects, Pearson correlation (α = 0.05).
Results
HM varied between 30.8 N/mm2 for PS (water 4 weeks) and 164.0 N/mm2 for CAM (toothbrush). HIT values between 34.9 N/mm2 for PS (water 4 weeks) and 238.9 N/mm2 for CAM (toothbrush) were found. EIT varied between 4.3 kN/mm2 for CAM (toothbrush) and 1.8 kN/mm2 for PK (water 2 weeks). ηIT was found to vary between 16.9% for PS (water 4 weeks) and 42.8% for PL (toothbrush). CIT varied between 2.5% for PL (toothbrush) and 11.4% for PS (water 4 weeks). The highest impact was identified for the material (p ≤ 0.001).
Conclusions
Storage and toothbrushing influenced Martens parameters. The properties of splints can be influenced by the choice of materials, based on different elastic and viscoelastic parameters. High HM and EIT and low CIT might be beneficial for splint applications.
Clinical relevance
Martens parameters HM, EIT, and CIT might help to evaluate clinically relevant splint properties such as hardness, elasticity, and creep.
Additional file 2: Table S2. of Continuous evolution of clinical phenotype in 578 Japanese patients with BehĂ§etâ  s disease: a retrospective observational study
Creators: name: Kirino, Yohei
name: Ideguchi, Haruko
name: Takeno, Mitsuhiro
name: Suda, Akiko
name: Higashitani, Kana
name: Kunishita, Yosuke
name: Takase-Minegishi, Kaoru
name: Maasa Tamura
name: Watanabe, Toshiyuki
name: Asami, Yukiko
name: Uehara, Takeaki
name: Yoshimi, Ryusuke
name: Yamazaki, Tetsu
name: Sekiguchi, Akiko
name: Ihata, Atsushi
name: Ohno, Shigeru
name: Ueda, Atsuhisa
name: Toshihisa Igarashi
name: Nagaoka, Shohei
name: Ishigatsubo, Yoshiaki
name: Nakajima, Hideaki
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Evolutionary Biology
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: Phenotype of patients with BD treated with biologic agents. (DOC 29 kb)
Reciprocal Antagonism: The Imd Pathway’s Anttviral Role and the Immune Antagonism Role of Orthoffaviviral NS4A in Mosquitoes
Creators: name: Cheung, Yin Panuwach
Publisher: name: University of Surrey
Year: 2024
Subjects: Orthoflavivirus
Mosquito Immunology
NF-κB
Alphafold2
Imd pathway

description: Arboviruses, including dengue virus (DENV), yellow fever virus (YFV), and Zika virus (ZIKV), pose a significant health and economic threat worldwide. These orthoflaviviruses are transmitted by Aedes aegypti mosquitoes, which are expanding their distribution to increase the global burden of disease. Therefore, understanding how these virus-host interactions are crucial. Our understanding of mosquito immunity largely stems from fruit fly models, which can exhibit varied responses to identical viruses. The mosquito Imd pathway is a NF-κB immune signalling pathway, that has been best characterised for its role in antibacterial and antifungal defence. This thesis sought to address key knowledge gaps regarding the overall antiviral effects of this pathway at a cellular level as well as the mechanisms by which viruses are sensed by and antagonise the pathway. YFV and ZIKV were shown to replicate earlier and to higher levels in A. aegypti cells deficient in NF-κB signalling, however, knocking out NFκB signalling does not allow all orthoflaviviruses to replicate. This indicates that NF-κB signalling is an important antiviral defense, but not the only barrier influencing the species tropism of orthoflaviviruses. Mosquito-borne orthoflaviviruses were subsequently shown to have the conserved ability to antagonise the Imd pathway response during viral infection, a mechanism for which the nonstructural protein, NS4A was shown to be partly responsible for. This mechanism of innate immune antagonism was found to be vector-specific, as only NS4A from Aedes-borne orthoflaviviruses antagonised the Imd pathway in A. aegypti cells. Further work to predict the structure of NS4A was carried out by the machine learning tool Alphafold2, with the goal of interrogating structure-function relationships. However, the predicted structures demonstrated numerous inconsistencies with functional data identified in the literature, reaffirming that Alpahfold2 still has flaws in accurately predicting transmembrane proteins and proteins that undergo conformational changes. Finally, attempts were made to characterise viral molecular patterns that stimulate the Imd pathway, and preliminary findings suggest that capped structured dsRNAs may be one of the molecular patterns sensed by the Imd pathway. This study reveals that the NF-κB pathway in A. aegypti cells reduce the replication of Aedes-borne orthoflaviviruses, and the NS4A protein encoded by these viruses, can antagonise the Imd pathway, which is potentially induced by the sensing of capped dsRNA structures. In the future, this information could generation of A. aegypti mosquitoes that cannot contribute to orthoflavivirus transmission.
Deraiophorus Canestrini 1897
Creators: name: Halliday, R. B.
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Mesostigmata
Uropodidae
Deraiophorus

description: Deraiophorus Canestrini, 1897
Deraiophorus Canestrini, 1897: 471.
Type species Deraiophorus chyzeri Canestrini, 1897: 471, designated by Vitzthum, 1942.
Notes. The genus name has been incorrectly spelled as Doraiophorus or Doralophorus by some authors. The name of the type species has been incorrectly spelled as chyceri by some authors.
description: Published as part of Halliday, R. B., 2015, Catalogue of genera and their type species in the mite Suborder Uropodina (Acari: Mesostigmata), pp. 101-147 in Zootaxa 3972 (2) on page 111, DOI: 10.11646/zootaxa.3972.2.1, http://zenodo.org/record/232777
MOESM1 of Sitagliptin monotherapy has better effect on insulinogenic index than glimepiride monotherapy in Japanese patients with type 2 diabetes mellitus: a 52-week, multicenter, parallel-group randomized controlled trial
Creators: name: Kondo, Yaeko
name: Harada, Norio
name: Hamasaki, Akihiro
name: Kaneko, Shizuka
name: Yasuda, Koichiro
name: Ogawa, Eiichi
name: Shin-Ichi Harashima
name: Yoneda, Hiroko
name: Fujita, Yoshihito
name: Norikazu Kitano
name: Nakamura, Yoshio
name: Matsuo, Fujio
name: Shinji, Megumi
name: Hinotsu, Shiro
name: Nakayama, Takeo
name: Nobuya Inagaki
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 60506 Virology

description: Additional file 1: Figure S1. The levels of PG (A and B), IRI (B and D), CPR (E and F), and glucagon (G and H) during OGTT before and after 52-week treatment in glimepiride (A, C, E, and G) and sitagliptin groups (B, D, F, and H). Outlined circles with a dotted line: pre-glimepiride treatment, filled circles with a solid line: post-glimepiride treatment. Outlined squares with a dotted line: pre-sitagliptin treatment, filled squares with a solid line: post-sitagliptin treatment. Values show least-squares mean with 95 % confidence interval (CI) estimated by a mixed-model for repeated measures analysis. Asterisks indicate significant differences between pre-treatment and post-treatment at each time point († p
NFDI-Matwerk IUC 09: Infrastructure interfaces with condensed matter physics (collaboration with FAIRmat)
Creators: name: Kühbach, Markus
name: Menon, Sarath
name: Saxena, Alaukik
name: Forti, Mariano
name: Kružíková, Pavlína
name: Hammerschmidt, Thomas
name: Draxl, Claudia
name: Hickel, Tilmann
Publisher: name: Zenodo
Year: 2024

description: https://ror.org/05qj6w324
Additional file 4: Figure S1.2. of Predicting Wolbachia invasion dynamics in Aedes aegypti populations using models of density-dependent demographic traits
Creators: name: Hancock, Penelope
name: White, Vanessa
name: Ritchie, Scott
name: Hoffmann, Ary
name: H. Godfray
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Ecology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: The observed cumulative number of pupae (red lines) and hatched larvae (black lines) compared and the posterior fitted values. The predicted cumulative numbers of pupae (blue lines) and hatched larvae (green lines) are given by the maximum posterior probability iteration. Blue and green shaded areas show the 95Â % credible interval for the cumulative numbers of pupae and hatched larvae respectively. Results for Populations A and B are shown on the left and right side of the vertical dotted line. (PDF 65 kb)
Additional file 3: Table S2. of Effect of atmospheric carbon dioxide levels and nitrate fertilization on glucosinolate biosynthesis in mechanically damaged Arabidopsis plants
Creators: name: Jamuna Paudel
name: Amirizian, Alexandre
name: Krosse, Sebastian
name: Giddings, Jessica
name: Shoieb Ismail
name: Jianguo Xia
name: Gloer, James
name: Dam, Nicole Van
name: Bede, Jacqueline
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Primers used for quantitative real time-polymerase chain reaction (qRT-PCR) (DOC 40 kb)
Comparison of postoperative isokinetic quadriceps and gluteal muscular strength after primary THA: is there an early benefit through enhanced recovery programs?
Creators: name: Reinhard, Jan
name: Schreiner, Annika
name: Dullien, Silvia
name: Götz, Julia Sabrina
name: Leiss, Franziska
name: Maderbacher, Günther
name: Grifka, Joachim
name: Greimel, Felix
Publisher: name: Universität Regensburg
Year: 2023
Subjects: subject: Total hip arthroplasty (THA), Fast track surgery, Early mobilization, Enhanced recovery after surgery (ERAS), Biodex, Isokinetic strength measurement
subject: 610 Medizin

description: Purpose
Although total hip arthroplasty (THA) is expected to result in a postoperative loss of muscular strength, no study investigated the benefit of an enhanced-recovery-after-surgery (ERAS) concept on the hip muscles in detail. We evaluated if (1) an ERAS-concept for primary THA results in reduced loss of muscular strength five days and four weeks postoperative. We (2) compared the two groups regarding Patient-Related-Outcome-Measures (PROMs), WOMAC-index (Western-Ontario-and-McMaster-Universities-Osteoarthritis-Index), HHS (Harris-Hip-Score) and EQ-5d-3L-score.
Methods
In a prospective, single-blinded, randomized controlled trial, we compared isokinetic muscular strength of 24 patients receiving primary THA with an enhanced recovery concept with early mobilization (n = 12, ERAS-group) and such receiving conventional THA (n = 12, non-ERAS). Isokinetic muscular strength was measured with a Biodex-Dynamometer before, as well as five days and four weeks after surgery (peak-torque, total-work, power). Furthermore, WOMAC, HHS, PROMs and EQ-5d-3L were imposed.
Results
The ERAS group revealed significant higher isokinetic strength (peak-torque, total-work, power) at both time points. Both groups showed a significant pain decrease at both time points meeting very high rates of patient satisfaction resembled by good results in PROMs, WOMAC, HHS, EQ-5d. There was no significant difference in any of the scores between both groups.
Conclusion
We proved a significant reduced loss of muscular strength five days and four weeks after primary THA in combination with an ERAS concept. However, the reduced loss of muscular strength is not reflected by patient’s functional outcome and quality of life, showing no significant differences in WOMAC, HHS, EQ-5d-3L, PROMs and NRS. Therefore, this study supports the implementation of an ERAS concept for primary THA in terms of isokinetic strength. Further studies are needed to evaluate the development of muscular strength over a long period.
Diarthrophallus Tragardh 1946
Creators: name: Halliday, R. B.
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Mesostigmata
Diarthrophallidae
Diarthrophallus

description: Diarthrophallus Trägårdh, 1946
Diarthrophallus Trägårdh, 1946: 370.
Type species Uroseius quercus Pearse & Wharton in Pearse et al., 1936: 478, by original designation.
description: Published as part of Halliday, R. B., 2015, Catalogue of genera and their type species in the mite Suborder Uropodina (Acari: Mesostigmata), pp. 101-147 in Zootaxa 3972 (2) on page 112, DOI: 10.11646/zootaxa.3972.2.1, http://zenodo.org/record/232777
Additional file 2: Table S2. of Association mapping for cold tolerance in two large maize inbred panels
Creators: name: Revilla, Pedro
name: Rodríguez, Víctor
name: Ordás, Amando
name: Rincent, Renaud
name: Charcosset, Alain
name: Giauffret, Catherine
name: Melchinger, Albrecht
name: Chris-Carolin Schön
name: Bauer, Eva
name: Altmann, Thomas
name: Brunel, Dominique
name: Moreno-González, Jesús
name: Campo, Laura
name: Ouzunova, Milena
name: Álvarez, Ángel
name: Galarreta, José Ruíz De
name: Laborde, Jacques
name: Malvar, Rosa
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Marine Biology
subject: Science Policy
subject: Plant Biology

description: SNPs declared as significantly associated to cold tolerance-related traits, chromosome location, P-Value, allele effect estimates, proportion of total variance explained by the SNPs from the association analyses for cold tolerance traits in two association panels of maize inbred lines evaluated in test-crosses under cold and control conditions and per se under control conditions. (DOCX 47 kb)
Additional file 1: Figure S1. of Effect of atmospheric carbon dioxide levels and nitrate fertilization on glucosinolate biosynthesis in mechanically damaged Arabidopsis plants
Creators: name: Jamuna Paudel
name: Amirizian, Alexandre
name: Krosse, Sebastian
name: Giddings, Jessica
name: Shoieb Ismail
name: Jianguo Xia
name: Gloer, James
name: Dam, Nicole Van
name: Bede, Jacqueline
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: MYB transcription factor regulation of glucosinolate biosynthesis in Arabidopsis. Wounding and wound-related stress hormones, such as jasmonic acid or methyl jasmonate, regulate MYB transcription factors that regulate glucosinolate biosynthesis. AtMYB28, AtMYB29 and AtMYB76 regulate expression of genes that encode enzymes in aliphatic GSL biosynthesis whereas AtMYB 34, AtMYB51 and AtMYB122 regulate expression of genes that encode enzymes in indole GSL biosynthesis. Abbreviations: abscisic acid: ABA, glucosinolate: GSL, jasmonic acid: JA, salicylic acid: SA. (PDF 7 kb)
Investigating the interaction between BDNF-TrkB signaling, inhibitory interneurons and cognition with relevance to schizophrenia
Creators: name: ADRIENNE MARY GRECH
Publisher: name: Monash University
Year: 2020
Subjects: Uncategorized

description: Cognitive symptoms of schizophrenia represent a possible therapeutic target. BDNF-TrkB signaling and inhibitory interneurons are considered part of the pathophysiology but the dynamics between them are not fully understood. Three mouse models of altered BDNF-TrkB signaling were used to investigate the interaction with inhibitory interneurons upon behaviour and molecular markers. This thesis supports that BDNF-TrkB signaling and inhibitory interneurons interact with sex to contribute to learning and memory problems. This thesis calls for a stronger research focus on these systems so that preventative and targeted approaches can be developed for schizophrenia.
Atropacarus (Hoplophorella) curtisetosus Niedbała & Starý, 2014, sp. nov.
Creators: name: Niedbała, Wojciech
name: Starý, Josef
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Sarcoptiformes
Phthiracaridae
Atropacarus
Atropacarus curtisetosus

description: Atropacarus (Hoplophorella) curtisetosus sp. nov.
(Figs. 1A–D)
Measurements of holotype. Prodorsum: length 167, width 121, height 51; sensillum 81, setae: in 18, le 10, ro 20; notogaster: length 296, width 195, height 177; setae: c 1 28, c 1/ c 1- d 1=0.4, h 1 28; p 1 20; genitoaggenital plate 83 x53; anoadanal plate 106 x78.
Description. Small species. Colour brown. Surface of body with cerotegument and covered with concavities.
Prodorsum (Fig. 1A) without lateral carinae. Posterior furrows present. Sigillar fields indistinct because cerotegument. Sensilli long, rod-like without head covered with cilia in distal half. Setae short, rod-like, stout, obtuse, and rough. Exobothridial setae vestigial.
Notogaster (Fig. 1B) with setae short (c 1<1/2 c 1- d 1), rigid, stout, obtuse, and rough, setae c 1 and c 3 remote from anterior margin, setae c 3 more so than c 1, setae c 2 considerably further. Only lyrifissures ip visible.
Ventral region (Fig. 1C). Genitoaggenital plates with nine pairs of setae with formula: 4+1: 4. Anoadanal plates with rough setae, setae ad 2 thickest and longest.
Legs (Fig. 1D) Formulae of setae and solenidia of “incomplete type ”. Setae d on femora I slightly remote from distal end of article, setae v’ absent.
Material examined. Holotype is deposited at DATE. Locus typicus: TAN-002, Tanzania, east slope of Southern Uluguru Mts., 18. XI. 2010, 07 °07'20" S, 37°38'37"E, altitude 2058m, mid-altitude afromountaine deciduous forest, litter sifting sample of leaf litter, leg. V. Grebennikov.
Etymology. The name curtus is Latin for “short” and alludes to the short prodorsal and notogastral setae.
Comparison. The new species is slightly similar to pantropical species A.(H.) stilifer (Hammer, 1961) but is distinguishable by the shape of its sensilli without a head, its shorter notogastral setae, the location of ad 2 setae laterally to an 1 setae (versus near of setae an 2) and the absence of setae v” on femora I (Hammer 1961, Niedbała 2001).
description: Published as part of Niedbała, Wojciech & Starý, Josef, 2014, New species of Atropacarus (Hoplophorella), (Acari, Oribatida, Phthiracaridae) from the Afrotropical Region in Zootaxa 3774 (1), DOI: 10.11646/zootaxa.3774.1.5, http://zenodo.org/record/226578
Additional file 1: Table S1.1. of Predicting Wolbachia invasion dynamics in Aedes aegypti populations using models of density-dependent demographic traits
Creators: name: Hancock, Penelope
name: White, Vanessa
name: Ritchie, Scott
name: Hoffmann, Ary
name: H. Godfray
Publisher: name: Figshare
Year: 2016
Subjects: subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics

description: Definitions and values of model parameters. (PDF 111 kb)
Retrospective analysis of decision-making in post-traumatic posterior shoulder instability
Creators: name: Bovenkerk, Simon
name: Englert, Carsten
Publisher: name: Universität Regensburg
Year: 2023
Subjects: subject: Posterior shoulder instability · Shoulder dislocation · Arthroscopy · Conservative therapy · Western Ontario Shoulder Instability Index (WOSI) · Decision-making
subject: 610 Medizin

description: Purpose
This study aims to assess the clinical outcomes in the management of post-traumatic posterior shoulder instability (PSI) with a focus on the decision-making process for operative and conservative treatments.
Introduction
PSI can result from traumatic events, impacting a patient’s quality of life. This study delves to better indicate decision-making for operative indication of post-traumatic PSI patients.
Methods
Patients who sustained posterior shoulder dislocations were selected from a single surgeon’s database within a five-year period. Cases of degenerative or genetically caused PSI were excluded, resulting in a cohort of 28. Patients were initially managed conservatively but indicated for surgery if they were unable to actively stabilize the shoulder or exhibited bony or cartilage defects confirmed through imaging. If conservative treatment did not yield significant improvements, it was classified as a failure, and operative intervention was recommended. The WOSI Score, ROM, and X-ray were employed to evaluate the success of treatment.
Results
Out of the 28 patients, 11 received conservative, seven immediate surgeries, and ten transitioned from conservative to operative treatment. The overall success rate showed 25 good to excellent results. In the persistent conservative treatment group, the initial WOSI score was significantly lower compared to the operative group.
Conclusion
This study suggests that post-traumatic PSI can be successfully managed conservatively with initial low clinical symptoms (low WOSI score) and in the absence of absolute indications for operative treatment. When surgery is necessary, arthroscopic procedures proved effective in achieving good to excellent results in 16 out of 17 cases.
فلسفة الحق في المنظور الإسلامي و الوضعي و دور الحقوق المدنية فيه
Creators: name: Alshamery, Mohmohed
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 480604
subject: Property law (excl. intellectual property law)

description: تُعدّ فلسفة الحق من الموضوعات الجوهرية في الفكر الفلسفي والقانوني، حيث تبحث في طبيعة الحق وأساسه وأنواعه ومصادره. وتختلف الرؤى الفلسفية للحق باختلاف المنطلقات الفكرية والمرجعيات المعرفية للباحثين. لقد تجاذبت الإنسان، منذ القدم، قضيتان هما؛ العدل والمصلحة. كان تحديد ماهيتهما والتوفيق بينهما، وما زال، أمرا عسيرا عنده بحسب ملكاته الذهنية. وقد ظهرت محاولات جادة من قبل فلاسفة عظام في تحديد معنى العدل، وبقيت محاولاتهم تلك وبحسب ما صرحوا هم به، لا تعدو كونها مجرد ظنون خالية من اليقين. والعالم محكوم بمنهجين على وجه الإجمال: منهج سماوي، ومنهج وضعي. تمثل الأول الشريعة الإسلامية الخالية من التحريف والتبديل. وتمثل الثاني بما سوى ذلك. وكلا المنهجين يعتمد العقل في التشريع. أما العقل في المنهج الإسلامي فلفهم التنزيل وأسراره ومقاصده، ومن ثم العمل على كشف أحكام كل ما لم يرد به نص في ضوء ذلك وبما يُصلح الواقع. وأما المنهج الوضعي فلإبعاد نفسه عن الشرائع المنزلة أعتمد العقل في الأمر كله، وان تجاذبه تضارب المصالح وشح النفوس.
Diet, Nutrition and the Multidisciplinary Approach in Adults with Inflammatory Bowel Disease: A Systematised Literature Review
Creators: name: Playford, Charlotte
Publisher: name: University of Lincoln
Year: 2024
Subjects: L500 - Social work
L510 - Health & welfare

description: This thesis is submitted to the University of Lincoln in fulfilment of the requirements of the award of Master of Science in Health and Social Care By Research.
Additional file 4: Table S4. of Association mapping for cold tolerance in two large maize inbred panels
Creators: name: Revilla, Pedro
name: Rodríguez, Víctor
name: Ordás, Amando
name: Rincent, Renaud
name: Charcosset, Alain
name: Giauffret, Catherine
name: Melchinger, Albrecht
name: Chris-Carolin Schön
name: Bauer, Eva
name: Altmann, Thomas
name: Brunel, Dominique
name: Moreno-González, Jesús
name: Campo, Laura
name: Ouzunova, Milena
name: Álvarez, Ángel
name: Galarreta, José Ruíz De
name: Laborde, Jacques
name: Malvar, Rosa
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Evolutionary Biology
subject: Sociology
subject: FOS: Sociology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Plant Biology

description: Flint inbred lines with the favorable allele for the SNPs significantly associated to cold tolerance-related traits and allele composition for the significant SNPs with highest level of signification from the testcross trials of flint inbreds. (DOCX 36 kb)
Dinychella Berlese 1888
Creators: name: Halliday, R. B.
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Mesostigmata
Halolaelapidae
Dinychella

description: Dinychella Berlese, 1888
Dinychella Berlese, 1888c: 9.
Type species Dinychella asperata Berlese, 1888c: 9, by monotypy.
description: Published as part of Halliday, R. B., 2015, Catalogue of genera and their type species in the mite Suborder Uropodina (Acari: Mesostigmata), pp. 101-147 in Zootaxa 3972 (2) on page 112, DOI: 10.11646/zootaxa.3972.2.1, http://zenodo.org/record/232777
Additional file 1: Table S1. of Indirect effects of contextual factors on patients’ consultations with healthcare professionals about health information found online
Creators: name: Younsook Yeo
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Sample characteristics and bivariate relationships of the study variables to patients’ consultations with healthcare professionals about health information found online among the e-health users (≥18). (DOCX 15 kb)
title: Nachhaltigkeit in der öffentlichen Beschaffung
title: Befunde zum „Intention-Action-Gap“ und wie er sich  verkleinern lässt
titleType: Subtitle
Creators: name: Kozuch, Alessa
name: von Deimling, Christian
name: Eßig, Michael
Publisher: name: Bertelsmann Stiftung
publisherIdentifier: https://ror.org/01wj9hk44
publisherIdentifierScheme: ROR
Year: 2024
Subjects: Öffentliche Beschaffung
Nachhaltigkeit
Vergaberecht
Verwaltung
Nachhaltigkeitskriterien

description: Der deutsche Staat beschafft jedes Jahr im großen Umfang Waren und Dienstleistungen. Das selbst gesteckte Ziel: Nachhaltigkeitskriterien sollen eine entscheidende Rolle für die Vergabe sein, damit auch die öffentliche Beschaffung die Transformation hin zu mehr Nachhaltigkeit anschiebt. Aktuell werden auf kommunaler Ebene jedoch nur 13,7 Prozent der Aufträge unter Einschluss von Nachhaltigkeitskriterien vergeben – Tendenz sinkend! Das ergibt eine aktuelle Studie der Universität der Bundeswehr München im Auftrag der Bertelsmann Stiftung.
Additional file 1: Table S1. of Interleukin-6, MCP-1, IP-10, and MIG are sequentially expressed in cerebrospinal fluid after subarachnoid hemorrhage
Creators: name: Aichi Niwa
name: Osuka, Koji
name: Nakura, Takahiro
name: Matsuo, Naoki
name: Takeya Watabe
name: Takayasu, Masakazu
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Science Policy
subject: Plant Biology
subject: 60506 Virology

description: Correlation coefficients showing the relationships among the levels of interleukin-6 (IL-6), monocyte chemoattractant protein-1 (MCP-1), interferon-Îł-inducible protein-10 (IP-10), and monokine induced by interferon-Îł (MIG). The maximum value of each cytokine or chemokine was adopted as its peak value. (DOC 28 kb)
Dinychopsis Berlese 1916
Creators: name: Halliday, R. B.
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Mesostigmata
Uropodidae
Dinychopsis

description: Dinychopsis Berlese, 1916
Phaulodinychus (Dinychopsis) Berlese, 1916b: 137. Type species Dinychopsis fractus Berlese, 1916b: 137, by original designation.
description: Published as part of Halliday, R. B., 2015, Catalogue of genera and their type species in the mite Suborder Uropodina (Acari: Mesostigmata), pp. 101-147 in Zootaxa 3972 (2) on page 112, DOI: 10.11646/zootaxa.3972.2.1, http://zenodo.org/record/232777
Der Stellenwert von Leitlinien in der Zahnheilkunde und in der zahnmedizinischen Ausbildung
Creators: name: Krohn, Sebastian
name: Kopp, Ina B.
name: Proff, Peter
Publisher: name: Universität Regensburg
Year: 2023
Subjects: subject: Leitlinien · Evidenzbasierte Zahnmedizin · Konsensus · Arbeitsgemeinschaft Wissenschaftlicher Medizinischer Fachgesellschaften (AWMF) · Zahnmedizinische Lehre
subject: 610 Medizin

description: Im Rahmen von qualitätssichernden Maßnahmen spielen evidenzbasierte Handlungsempfehlungen in der Zahn- und Humanmedizin eine zunehmend bedeutendere Rolle. Die von Expertengremien methodenkritisch evaluierten Wissenschaftserkenntnisse werden dabei zu einfach verständlichen Leitlinien zusammengefasst. Entsprechend der Konsens- und Evidenzgewichtung des Erstellungsprozesses werden die Leitlinien in verschiedenen Entwicklungsstufen qualitativ bewertet. Seit der Gründung in den 1960er-Jahren erfolgen die Publikation von Leitlinien und die Koordination der Leitlinienerstellung durch die Arbeitsgemeinschaft der Wissenschaftlichen Medizinischen Fachgesellschaften (AWMF). Zum aktuellen Zeitpunkt sind 44 zahnmedizinische Leitlinien verfügbar, die zum größten Teil mit der höchsten Entwicklungsstufe S3 bewertet sind. Dadurch sind Handlungskorridore für eine Vielzahl von Behandlungsmaßnahmen für zahnärztliches Personal der universitären Standorte und Praxen definiert, deren Implementierung in den klinischen Alltag wünschenswert ist. Mangelnde Akzeptanz von Leitlinien und ein hoher Ressourcenaufwand bei deren Erstellung sind wesentliche Limitationen im Ausbau der evidenzbasierten Zahnmedizin. Diese könnten durch Einführung der wissenschaftlichen Grundausbildung innerhalb des Zahnmedizinstudiums und verstärkte Förderung des wissenschaftlichen Nachwuchses überwunden werden, um hohe Behandlungsqualität und Ökonomie in der Zahnheilkunde auch zukünftig zu gewährleisten. Leitlinien können die zahnmedizinische Ausbildung unterstützen, indem sie Studierenden wissenschaftlich abgesicherte Handlungsschablonen bieten und den Lehrenden helfen, den hohen Anforderungen im Rahmen von praktischen Kursen gerecht zu werden.
Additional file 1: of Genome-scale methylation assessment did not identify prognostic biomarkers in oral tongue carcinomas
Creators: name: Lim, Annette
name: Wong, Nicholas
name: Pidsley, Ruth
name: Zotenko, Elena
name: Corry, June
name: Dobrovic, Alexander
name: Clark, Susan
name: Rischin, Danny
name: Solomon, Benjamin
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Inorganic Chemistry
subject: Science Policy
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Supplementary figures and tables. Figure S1. Unsupervised clustering of analysis of OTSCC cohort and combined OTSCC cohort of samples. A) MDS plot of the 1000 most variable methylation values from the OTSCC cohort demonstrating no distinct groups. B) Dendrogram of methylation values from OTSCC cohort demonstrating at least seven distinct subgroups. C) Dendrogram of methylation values including good quality SNP probes, from the entire cohort of 414 samples, demonstrating at least 15 subgroups. Table S1. The TCGA HNSCC cohort with sample numbers listed according to anatomical subsite. Table S2. Summary of bioinformatics processing of the different cohorts of input data. (DOC 525 kb)
Adipose tissue depot specific expression and regulation of fibrosis-related genes and proteins in experimental obesity
Creators: name: Eisinger, Kristina
name: Girke, Philipp
name: Buechler, Christa
name: Krautbauer, Sabrina
Publisher: name: Universität Regensburg
Year: 2023
Subjects: subject: Bambi · Actin alpha 2 smooth muscle · Collagen · White fat · Brown fat · Lipopolysaccharide
subject: 610 Medizin

description: Transforming growth factor beta (Tgfb) is a well-studied pro-fibrotic cytokine, which upregulates cellular communication network factor 2 (Ccn2), collagen, and actin alpha 2, smooth muscle (Acta2) expression. Obesity induces adipose tissue fibrosis, which contributes to metabolic diseases. This work aimed to analyze the expression of Tgfb, Ccn2, collagen1a1 (Col1a1), Acta2 and BMP and activin membrane-bound inhibitor (Bambi), which is a negative regulator of Tgfb signaling, in different adipose tissue depots of mice fed a standard chow, mice fed a high fat diet (HFD) and ob/ob mice. Principally, these genes were low expressed in brown adipose tissues and this difference was less evident for the ob/ob mice. Ccn2 and Bambi protein as well as mRNA expression, and collagen1a1 mRNA were not induced in the adipose tissues upon HFD feeding whereas Tgfb and Acta2 mRNA increased in the white fat depots. Immunoblot analysis showed that Acta2 protein was higher in subcutaneous and perirenal fat of these mice. In the ob/ob mice, Ccn2 mRNA and Ccn2 protein were upregulated in the fat depots. Here, Tgfb, Acta2 and Col1a1 mRNA levels and serum Tgfb protein were increased. Acta2 protein was, however, not higher in subcutaneous and perirenal fat of these mice. Col6a1 mRNA was shown before to be higher in obese fat tissues. Current analysis proved the Col6a1 protein was induced in subcutaneous fat of HFD fed mice. Notably, Col6a1 was reduced in perirenal fat of ob/ob mice in comparison to the respective controls. 3T3-L1 cells express Ccn2 and Bambi protein, whose levels were not changed by fatty acids, leptin, lipopolysaccharide, tumor necrosis factor and interleukin-6. All of these factors led to higher Tgfb in 3T3-L1 adipocyte media but did not increase its mRNA levels. Free fatty acids induced necrosis whereas apoptosis did not occur in any of the in vitro incubations excluding cell death as a main reason for higher Tgfb in cell media. In summary, Tgfb mRNA is consistently induced in white fat tissues in obesity but this is not paralleled by a clear increase of its target genes. Moreover, discrepancies between mRNA and protein expression of Acta2 were observed. Adipocytes seemingly do not contribute to higher Tgfb mRNA levels in obesity. These cells release more Tgfb protein when challenged with obesity-related metabolites connecting metabolic dysfunction and fibrosis.
Additional file 5: Figure S2. of Effect of atmospheric carbon dioxide levels and nitrate fertilization on glucosinolate biosynthesis in mechanically damaged Arabidopsis plants
Creators: name: Jamuna Paudel
name: Amirizian, Alexandre
name: Krosse, Sebastian
name: Giddings, Jessica
name: Shoieb Ismail
name: Jianguo Xia
name: Gloer, James
name: Dam, Nicole Van
name: Bede, Jacqueline
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Hematology
subject: Plant Biology

description: Heat map of foliar metabolite profiles of Arabidopsis grown at different CO2levels, nitrate fertilization and wounding stress. Plants were grown under two different atmospheric CO2 levels (ambient (440 ppm; LC) or elevated (880 ppm; HC)) and fertilized with either 1 mM (LN) or 10 mM (HN) nitrate and either not treated (control) or mechanically damaged (wound). The average of 4 independent samples were compared by 2-way analysis of variance. Metabolites are identified by retention time/mass over charge ratio (RT/m/z). A) Constitutive foliar metabolic profile. Factors; 1 mM nitrate (blue), 10 mM nitrate (pink), 440 ppm CO2 (green) and 880 ppm CO2 (purple). B) Wound-induced metabolite profile. Factors; 1 mM nitrate (blue), 10 mM nitrate (pink), 440 ppm CO2 (green) and 880 ppm CO2 (purple). C) Metabolite profile of plants grown at ambient CO2 levels (440 ppm). Factors; constitutive (pink), mechanically damaged (blue), 1 mM nitrate (green) and 10 mM nitrate (purple). D) Metabolite profile of plants grown at elevated CO2 levels (880 ppm). Factors; constitutive (pink), mechanically damaged (blue), 1 mM nitrate (green) and 10 mM nitrate (purple). E) Metabolite profile of plants fertilized with 1 mM nitrate. Factors; control (pink), mechanically damaged (blue),440 ppm CO2 (green) and 880 ppm CO2 (purple). F) Metabolite profile of plants fertilized with 10 mM nitrate. Factors; control (pink), mechanically damaged (blue),440 ppm CO2 (green) and 880 ppm CO2 (purple). (PDF 204 kb)