cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Public awareness of seafood mislabeling
Creators: name: Manning, Olivia G.
name: Bruno, John F.
name: Ryburn, Savannah J.
name: Loncan, Florencia M.
name: Ballantine, Wilker M.
name: Alston, Meggan A.
name: Steinwand, Blaire
Publisher: name: PeerJ
Year: 2022

description: A substantial portion of seafood is mislabeled, causing significant impacts to human health, the environment, the economy, and society. Despite the large scientific literature documenting seafood mislabeling the public's awareness of seafood mislabeling is unknown. We conducted an online survey to assess the public's awareness and perceptions of seafood mislabeling. Of the 1,216 respondents, 38% had never heard of seafood mislabeling and 49% were only 'vaguely familiar' with it. After being provided the definition of seafood mislabeling 95% had some degree of concern. Respondents were the most concerned about environmental impacts caused by seafood mislabeling and the least concerned about the social justice implications. Respondents who were also more concerned and familiar with seafood mislabeling stated that they would be more likely to purchase seafood from a vendor where the labeling was independently verified.
MOESM1 of Engineering of a high lipid producing Yarrowia lipolytica strain
Creators: name: Friedlander, Jonathan
name: Tsakraklides, Vasiliki
name: Annapurna Kamineni
name: Greenhagen, Emily
name: Consiglio, Andrew
name: MacEwen, Kyle
name: Crabtree, Donald
name: Afshar, Jonathan
name: Nugent, Rebecca
name: Hamilton, Maureen
name: A. Joe Shaw
name: South, Colin
name: Stephanopoulos, Gregory
name: Brevnova, Elena
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Computational Biology

description: Additional file 1: Contains a description of the multi-copy integration experiment, gene overexpression vectors, lipid biosynthesis pathway gene sequences used in this study, and primers used to construct gene knockout targets.
Energy transfer and grain size effects during the Standard Penetration Test (SPT) and Large Penetration Test (LPT)
Creators: name: Daniel, Christopher Ryan
Publisher: name: University of British Columbia
Year: 2008

description: The Standard Penetration Test (SPT) is the most widely used in-situ soil test in the world. "Large Penetration Test" (LPT) is a term used to describe any scaled up version of the SPT. Several types of LPT have been developed around the world for the purpose of characterizing gravel deposits, as SPT blow counts are less reliable in gravels than in sands. Both tests suffer from the lack of a reliable means of determining transferred energy. Further, the use of LPT blow counts is generally limited to calculation of equivalent SPT blow counts using correlation factors measured in sands. Variation of LPT blow counts with grain size is assumed to be negligible. This research shows that safety hammer energies can be reliably estimated from measurements of hammer impact velocity for both SPT and LPT. This approach to determining transferred energy is relatively simple, and avoids the primary limitation of existing methods, which is the inability to calibrate the instrumentation. Transferred energies and hammer impact velocities are collected from various sources. These data are used to determine the ratio between the hammer kinetic energy and the transferred energy (energy transfer ratio, ETR), which is found to follow a roughly Normal distribution for the various hammers represented. An assessment of uncertainty is used to demonstrate that an ETR based approach could be superior to existing energy measurement methods. SPT grain size effects have primarily been characterized as the variation of an empirical relative density correlation factor, (CD)SPT, with mean grain size. In this thesis, equivalent (CD)LPT data are back-calculated from measured SPT-LPT correlation factors (CS/L). Results of a numerical study suggest that SPT and LPT grain size effects should be similar and related to the ratio of the sample size to the mean grain size. Based on this observation, trend-lines with the same shape as the (CD)SPT trend-line are established for the back-calculated (CD)LPT data. A method for generating the grain size effect trend-line for LPT is then proposed. These trend lines provide a rational approach to direct interpretation of LPT data, or to improved prediction of equivalent SPT blow counts.
KamNet: An integrated spatiotemporal deep neural network for rare event searches in KamLAND-Zen*
Creators: name: Winslow, L. A.
name: Grant, C.
name: Li, A.
name: Takeuchi, A.
name: Song, H.
name: Shimizu, I.
name: Ozaki, H.
name: Fu, Z.
Publisher: name: American Physical Society (APS)
Year: 2023

description: Rare event searches allow us to search for new physics at energy scales inaccessible with other means by leveraging specialized large-mass detectors. Machine learning provides a new tool to maximize the information provided by these detectors. The information is sparse, which forces these algorithms to start from the lowest level data and exploit all symmetries in the detector to produce results. In this work we present KamNet, which harnesses breakthroughs in geometric deep learning and spatiotemporal data analysis to maximize the physics reach of KamLAND-Zen, a kiloton scale spherical liquid scintillator detector searching for 0νββ. Using a simplified background model for KamLAND, we show that KamNet outperforms a conventional convolutional neural network (CNN) on benchmarking Monte Carlo simulations with an increasing level of robustness. Using simulated data, we then demonstrate KamNet’s ability to increase KamLAND-Zen’s sensitivity to 0νββ and 2νββ decay to excited states. A key component of this work is the addition of an attention mechanism to elucidate the underlying physics KamNet is using for the background rejection.
A Design Experience for Interactive Narrative Based on The User Behavior
Creators: name: Yao, Yuan
name: Mi, Haipeng
Publisher: name: arXiv
Year: 2024
Subjects: subject: Human-Computer Interaction (cs.HC)
subject: FOS: Computer and information sciences

description: Research on interactive narrative experiences in physical spaces is becoming more popular, growing into an established new media art format with the development of technology and evolution of audience aesthetics. However, the methods of designing interactive narratives are still similar to the basic video narratology of traditional designers, directors, and producers. This paper provides a design method based on the user's physical behavior and proposes an art installation by this method, where the aim of the installation is to transmit a more vivid story to users, presenting a new research inspiration of interactive narratology for designers and researchers.
description: to appear at Cumulus Conference Proceedings Roma 2021
Microphotus dilatatus LeConte 1866
Creators: name: Pérez-Hernández, Cisteil X.
name: Zaragoza-Caballero, Santiago
name: Romo-Galicia, Alberto
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lampyridae
Microphotus
Microphotus dilatatus

description: Microphotus dilatatus LeConte, 1866
USA; MEXICO: BC, BS, DG, SO
description: Published as part of Pérez-Hernández, Cisteil X., Zaragoza-Caballero, Santiago & Romo-Galicia, Alberto, 2022, Updated checklist of the fireflies (Coleoptera: Lampyridae) of Mexico, pp. 291-317 in Zootaxa 5092 (3) on page 300, DOI: 10.11646/zootaxa.5092.3.3, http://zenodo.org/record/5881269
Charge trapping correction and energy performance of the Majorana Demonstrator
Creators: name: Haufe, C. R.
name: Caldwell, T. S.
name: Gruszko, J.
name: Lopez-Castano, J M
name: Wiseman, C
name: Blalock, E.
name: Massarczyk, R.
name: Efremenko, Yu.
name: Chu, P.-H.
name: Bhimani, K. H.
name: Guiseppe, V. E.
name: Detwiler, J. A.
name: Zhu, B X
name: Li, A.
name: Buuck, M.
name: Barton, C. J.
name: Varner, R. L.
name: Cuesta, C.
name: Kouzes, R. T.
name: Yu, C-H
name: Martin, R. D.
name: Vasilyev, S
name: Paudel, L. S.
name: Giovanetti, G. K.
name: Othman, G.
name: Mertens, S.
name: Ejiri, H.
name: Henning, R.
name: Hostiuc, A.
name: Reine, A. L.
name: Poon, A. W. P.
name: Kim, I.
name: Avignone, F. T.
name: Wilkerson, J. F.
name: Arnquist, I. J.
name: Rielage, K.
name: Tedeschi, D.
name: Pettus, W.
name: Christofferson, C. D.
name: Busch, M.
name: Green, M. P.
name: Martin, E. L.
name: Meijer, S. J.
name: Xu, W
name: Schaper, D. C.
name: Lannen V, T E
name: Bos, B.
name: Oli, T. K.
name: Guinn, I. S.
name: Barabash, A. S.
name: Clark, M. L.
name: Elliott, S. R.
name: Hoppe, E. W.
name: Hervas Aguilar, D
name: Chan, Y.-D.
name: Kidd, M. F.
name: Radford, D. C.
name: Ruof, N. W.
Publisher: name: American Physical Society (APS)
Year: 2023

description: P-type point contact (PPC) high-purity germanium detectors are an important technology in astroparticle and nuclear physics due to their superb energy resolution, low noise, and pulse shape discrimination capabilities. Analysis of data from the Majorana Demonstrator, a neutrinoless double-Î² decay experiment deploying PPC detectors enriched in Ge76, has led to several novel improvements in the analysis of PPC signals. In this work we discuss charge trapping in PPC detectors and its effect on energy resolution. Small dislocations or impurities in the crystal lattice result in trapping of charge carriers from an ionization event of interest, attenuating the signal, and degrading the measured energy. We present a modified digital pole-zero correction to the signal energy estimation that counters the effects of charge trapping and improves the energy resolution of the Majorana Demonstrator by approximately 30% to around 2.4 keV full width at half-maximum at 2039 keV, the Ge76 Q value. An alternative approach achieving similar resolution enhancement is also presented.
Additional file 3: Figure S1. of Regulatory dissection of the CBX5 and hnRNPA1 bi-directional promoter in human breast cancer cells reveals novel transcript variants differentially associated with HP1α down-regulation in metastatic cells
Creators: name: Vad-Nielsen, Johan
name: Jakobsen, Kristine
name: Daugaard, Tina Fuglsang
name: Thomsen, Rune
name: Brügmann, Anja
name: Boe Sørensen
name: Nielsen, Anders
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Biotechnology
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: CBX1 and CBX3 and correlation of expression analyses. A) Schematized view of CBX3 and hnRNPA2B1 (not drawn to scale). Arrows indicate direction of transcription. The coding region is indicated by black colouring. pA indicates the localization of poly-A signals. A2UCOE represents localization of the characterized insulator element. B) Correlation analysis of CBX3 and hnRNPA2B1 expression in the NCI-60 breast cancer cell panel. The analysis presented as heat map was performed using the CellMiner database, http://discover.nci.nih.gov/cellminer/ , with red symbolizing positive and blue negative correlation. C) Correlation analysis of CBX1, CBX3, CBX5, hnRNPA1 and hnRNPA2B1 expression in the NCI-60 breast cancer cell panel. The analysis presented as correlation coefficients estimated using the CellMiner database with red numbering symbolizing significant expression correlation. D) Schematized view of CBX1 and neighboring SNX11 (not drawn to scale). Arrows indicate direction of transcription. The coding region is indicated by black coloring. The position of a promoter overlapping CpG island is shown. (PDF 380 kb)
Chain stiffness boosts active nanoparticle transport in polymer networks
Creators: name: Merlitz, Holger
name: Wu, Chen-Xu
name: Cao, Xue-Zheng
name: Forest, M. Gregory
Publisher: name: American Physical Society (APS)
Year: 2021

description: Recent advances in technologies such as nanomanufacturing and nanorobotics have opened new pathways for the design of active nanoparticles (NPs) capable of penetrating biolayers for biomedical applications, e.g., for drug delivery. The coupling and feedback between active NP motility (with large stochastic increments relative to passive NPs) and the induced nonequilibrium deformation and relaxation responses of the polymer network, spanning scales from the NP to the local structure of the network, remain to be clarified. Using molecular dynamics simulations, combined with a Rouse mode analysis of network chains and position and velocity autocorrelation functions of the NPs, we demonstrate that the mobility of active NPs within cross-linked, concentrated polymer networks is a monotonically increasing function of chain stiffness, contrary to passive NPs, for which chain stiffness suppresses mobility. In flexible networks, active NPs exhibit a behavior similar to passive NPs, with a boost in mobility proportional to the self-propulsion force. These results are suggestive of design strategies for active NP penetration of stiff biopolymer matrices.
Seepage induced instability in widely graded soils
Creators: name: Li, Maoxin
Publisher: name: University of British Columbia
Year: 2008

description: Internal instability of a widely graded cohesionless soil refers to a phenomenon in which its finer particles migrate within the void network of its coarser particles, as a result of seepage flow. Onset of internal instability of a soil is governed by a combination of geometric and hydromechanical constraints. Much concern exists for embankment dams and levees built using soils with a potential for internal instability. Migration of finer particles to a boundary where they can exit, by washing out, may cause erosion or piping failure and, occasionally, induce collapse of these soil structures. There is a need, in professional practice, to better understand the phenomenon and to develop improved methods to evaluate the susceptibility of a soil. A series of permeameter tests was performed on six widely-graded cohesionless materials. The objectives are to assess the geometric indices proposed for evaluation of susceptibility, and examine hydromechanical factors influence the onset of internal instability. A modified slurry mixing technique, with discrete deposition, was found satisfactory for reconstitution of the homogeneous saturated test specimens. The onset of internal instability was founded to be triggered by a combination of effective stress and hydraulic gradient. The finding yields a hydromechanical envelope, unique for a particular gradation shape, at which internal instability initiated. Three commonly used geometric criteria were comprehensively evaluated with reference to these experimental data and also a database compiled from the literature. The relative conservatism of each criterion was examined and a modified semi-empirical geometric rule then proposed based on the capillary tube model. A theoretical framework for plotting the hydromechanical envelope was established based on an extension of the α concept of Skempton and Brogan, and subsequently verified by test data. Finally, a novel unified approach was proposed to assess the onset of internal instability, based on combining geometric and hydromechanical indices of a soil.
Microphotus morronei Zaragoza-Caballero, Lopez-Perez & Rodriguez-Miron 2021
Creators: name: Pérez-Hernández, Cisteil X.
name: Zaragoza-Caballero, Santiago
name: Romo-Galicia, Alberto
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lampyridae
Microphotus
Microphotus morronei

description: Microphotus morronei Zaragoza-Caballero, López-Pérez & Rodríguez-Mirón, 2021
MEXICO: BS Endemic
description: Published as part of Pérez-Hernández, Cisteil X., Zaragoza-Caballero, Santiago & Romo-Galicia, Alberto, 2022, Updated checklist of the fireflies (Coleoptera: Lampyridae) of Mexico, pp. 291-317 in Zootaxa 5092 (3) on page 300, DOI: 10.11646/zootaxa.5092.3.3, http://zenodo.org/record/5881269
Additional file 11: Table S9. of Novel approach for identification of influenza virus host range and zoonotic transmissible sequences by determination of host-related associative positions in viral genome segments
Creators: name: Kargarfard, Fatemeh
name: Ashkan Sami
name: Mohammadi-Dehcheshmeh, Manijeh
name: Esmaeil Ebrahimie
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Listing the rules extracted from PA-X protein of influenza A in identification of host ranges. (DOCX 21 kb)
Traveling Faraday waves
Creators: name: Saenz, Pedro J.
name: Durey, Matthew
name: Camassa, Roberto
name: Guan, Jian H.
name: Magoon, Connor W.
Publisher: name: American Physical Society (APS)
Year: 2023

description: This paper is associated with a video winner of a 2022 American Physical Society's Division of Fluids Dynamics (DFD) Milton van Dyke Award for work presented at the DFD Gallery of Fluid Motion. The original video is available online at the Gallery of Fluid Motion, https://doi.org/10.1103/APS.DFD.2022.GFM.V0040
Microphotus pecosensis Fall 1912
Creators: name: Pérez-Hernández, Cisteil X.
name: Zaragoza-Caballero, Santiago
name: Romo-Galicia, Alberto
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lampyridae
Microphotus
Microphotus pecosensis

description: Microphotus pecosensis Fall, 1912
USA; MEXICO: CH
description: Published as part of Pérez-Hernández, Cisteil X., Zaragoza-Caballero, Santiago & Romo-Galicia, Alberto, 2022, Updated checklist of the fireflies (Coleoptera: Lampyridae) of Mexico, pp. 291-317 in Zootaxa 5092 (3) on page 300, DOI: 10.11646/zootaxa.5092.3.3, http://zenodo.org/record/5881269
Final Result of the Majorana Demonstrator's Search for Neutrinoless Double-𝛽 Decay in Ge76
Creators: name: Caldwell, T S
name: Bhimani, K H
name: Christofferson, C D
name: Bos, B
name: Meijer, S J
name: Avignone, F T
name: Mertens, S
name: Varner, R L
name: Rielage, K
name: Poon, A W P
name: Radford, D C
name: Wilkerson, J F
name: Chu, P-H
name: Busch, M
name: Green, M P
name: Kim, I
name: Lannen V, T E
name: Hervas Aguilar, D
name: Hoppe, E W
name: Ejiri, H
name: Barabash, A S
name: Guinn, I S
name: Ruof, N W
name: Vasilyev, S
name: Wiseman, C
name: Martin, R D
name: Lopez-Castano, J M
name: Lopez, A M
name: Gruszko, J
name: Kouzes, R T
name: Elliott, S R
name: Hostiuc, A
name: Clark, M L
name: Oli, T K
name: Schaper, D C
name: Barton, C J
name: Xu, W
name: Cuesta, C
name: Reine, A L
name: Pettus, W
name: Li, A
name: Buuck, M
name: Massarczyk, R
name: Barton, P J
name: Chan, Y-D
name: Blalock, E
name: Yu, C-H
name: Guiseppe, V E
name: Haufe, C R
name: Zhu, B X
name: Arnquist, I J
name: Henning, R
name: Tedeschi, D
name: Othman, G
name: Paudel, L S
name: Martin, E L
name: Giovanetti, G K
name: Kidd, M F
name: Detwiler, J A
name: Efremenko, Yu
Publisher: name: American Physical Society (APS)
Year: 2023

description: The MAJORANA DEMONSTRATOR searched for neutrinoless double-β decay (0νββ) of 76Ge using modular arrays of high-purity Ge detectors operated in vacuum cryostats in a low-background shield. The arrays operated with up to 40.4 kg of detectors (27.2 kg enriched to ∼88% in 76Ge). From these measurements, the DEMONSTRATOR has accumulated 64.5 kg yr of enriched active exposure. With a world-leading energy resolution of 2.52 keV FWHM at the 2039 keV Qββ (0.12%), we set a half-life limit of 0νββ in 76Ge at T1=2 > 8.3 × 1025 yr (90% C.L.). This provides a range of upper limits on mββ of (113–269) meV (90% C.L.), depending on the choice of nuclear matrix elements.
Constraints on the Decay of Ta180m
Creators: name: Barton, C. J.
name: Efremenko, Yu.
name: Meijer, W.
name: Poon, A. W. P.
name: Schaper, D. C.
name: Cuesta, C.
name: Hervas Aguilar, D
name: Buuck, M.
name: Paudel, L. S.
name: Lopez-Castano, J M
name: Lannen V, T E
name: Meijer, S. J.
name: Bhimani, K. H.
name: Guiseppe, V. E.
name: Barabash, A. S.
name: Henning, R.
name: Alves, D. S. M.
name: Ramani, H.
name: Oli, T. K.
name: Varner, R. L.
name: Vasilyev, S
name: Ruof, N. W.
name: Guinn, I. S.
name: Smith-Gandy, T. A.
name: Tedeschi, D.
name: Yu, C-H
name: Reine, A. L.
name: Rielage, K.
name: Wilkerson, J. F.
name: Massarczyk, R.
name: Goett, J.
name: Hebenstiel, L.
name: Xu, W
name: Elliott, S. R.
name: Watkins, S. L.
name: Chu, P.-H.
name: Wiseman, C
name: Hostiuc, A.
name: Clark, M. L.
name: Gruszko, J.
name: Bos, B.
name: Kim, I.
name: Kouzes, R. T.
name: Busch, M.
name: Schleich, S. J.
name: Arnquist, I. J.
name: Thompson, J. D.
name: Avignone, F. T.
name: Blalock, E.
name: Pettus, W.
name: Rouyer, A.
name: Ejiri, H.
name: Green, M. P.
name: Radford, D. C.
name: Detwiler, J. A.
name: Caldwell, T. S.
name: Giovanetti, G. K.
name: Li, A.
name: Hoppe, E. W.
name: Christofferson, C. D.
name: Haufe, C. R.
Publisher: name: American Physical Society (APS)
Year: 2023

description: 180mTa is a rare nuclear isomer whose decay has never been observed. Its remarkably long lifetime surpasses the half-lives of all other known β and electron capture decays due to the large K-spin differences and small energy differences between the isomeric and lower-energy states. Detecting its decay presents a significant experimental challenge but could shed light on neutrino-induced nucleosynthesis mechanisms, the nature of dark matter, and K-spin violation. For this study, we repurposed the Majorana Demonstrator, an experimental search for the neutrinoless double-beta decay of 76Ge using an array of high-purity germanium detectors, to search for the decay of 180mTa. More than 17 kg, the largest amount of tantalum metal ever used for such a search, was installed within the ultralow-background detector array. In this Letter, we present results from the first year of Ta data taking and provide an updated limit for the 180mTa half-life on the different decay channels. With new limits up to 1.5 × 1019 yr, we improved existing limits by 1–2 orders of magnitude which are the most sensitive searches for a single β and electron capture decay ever achieved. Over all channels, the decay can be excluded for T1=2 < 0.29 × 1018 yr.
Additional file 1: Tables S1-S26 and Figures S1-S16. of The influence of trematode parasite burden on gene expression in a mammalian host
Creators: name: Bhagya Wijayawardena
name: Minchella, Dennis
name: J. DeWoody
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Contains additional results, primer sequences, RNA quality parameters, descriptive statistics and annotation details of assemblies, GO terms (lists and figures), significantly enriched KEGG IDs, xenobiotic characterizations, PCR results and qPCR validations. (PDF 2247 kb)
title: Colloque international : Expériences sensibles, fabrique et critique des territoires en mutation
Publisher: name: Ambiances Architectures Urbanités
Year: 2023

description: Comment les approches sensibles qui ne cessent de monter en puissance dans le champ de la recherche architecturale, urbaine et paysagère peuvent-elles enrichir les débats actuels sur les mutations profondes qui bouleversent le quotidien des territoires, tant sur le plan social que politique, climatique, énergétique, numérique, etc. ?
HISTORICAL PERSPECTIVES ON THE DEVELOPMENT OF ENGLISH ANTHROPONYMS
Creators: name: Baymirzaeva, Madina
name: Ismailova, Reime
Publisher: name: Zenodo
Year: 2024

description: This article deals with the historical development of anthroponyms, which was evaluating during many centuries. English proper names have a long history of development and functionalizing. What is more, national features of proper names find their reflection in the anthroponomical formula. Proper names, functionalizing at the current stage in English language, were created and borrowed from various sources and entered the system of proper by names gradually.
Additional file 4: of CytoSpectre: a tool for spectral analysis of oriented structures on cellular and subcellular levels
Creators: name: Kartasalo, Kimmo
name: Risto-Pekka Pölönen
name: Ojala, Marisa
name: Rasku, Jyrki
name: Lekkala, Jukka
name: Aalto-Setälä, Katriina
name: Kallio, Pasi
Publisher: name: Figshare
Year: 2015
Subjects: subject: Cell Biology
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Science Policy

description: Supplementary information. This file contains detailed descriptions of computational and experimental methods as well as results and discussion of the sensitivity analysis. (PDF 715 kb)
Additional file 12: Table S10. of Novel approach for identification of influenza virus host range and zoonotic transmissible sequences by determination of host-related associative positions in viral genome segments
Creators: name: Kargarfard, Fatemeh
name: Ashkan Sami
name: Mohammadi-Dehcheshmeh, Manijeh
name: Esmaeil Ebrahimie
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Listing the rules extracted from PB1 protein of influenza A in identification of host ranges. (DOCX 20 kb)
Additional file 3: of CytoSpectre: a tool for spectral analysis of oriented structures on cellular and subcellular levels
Creators: name: Kartasalo, Kimmo
name: Risto-Pekka Pölönen
name: Ojala, Marisa
name: Rasku, Jyrki
name: Lekkala, Jukka
name: Aalto-Setälä, Katriina
name: Kallio, Pasi
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology

description: CytoSpectre user guide. This file contains the user guide of the software. (PDF 464 kb)
Exotic Dark Matter Search with the Majorana Demonstrator
Creators: name: Blalock, E
name: Paudel, L S
name: Christofferson, C D
name: Lopez-Castano, J M
name: Lannen V, T E
name: Rager, J
name: Martin, R D
name: Oli, T K
name: Hervas Aguilar, D
name: Li, A
name: Detwiler, J A
name: Ruof, N W
name: Radford, D C
name: Mertens, S
name: Ejiri, H
name: Reine, A L
name: Kidd, M F
name: Pettus, W
name: Zhu, B X
name: Busch, M
name: Cuesta, C
name: Guiseppe, V E
name: Rielage, K
name: Caldwell, T S
name: Lopez, A M
name: Kouzes, R T
name: Avignone, F T
name: Poon, A W P
name: Clark, M L
name: Green, M P
name: Efremenko, Yu
name: Hostiuc, A
name: Bos, B
name: Guinn, I S
name: Henning, R
name: Chu, P-H
name: Bhimani, K H
name: Hoppe, E W
name: Elliott, S R
name: Arnquist, I J
name: Wiseman, C
name: Yu, C-H
name: Buuck, M
name: Chan, Y-D
name: Barabash, A S
name: Giovanetti, G K
name: Xu, W
name: Haufe, C R
name: Tedeschi, D
name: Martin, E L
name: Wilkerson, J F
name: Othman, G
name: Gruszko, J
name: Massarczyk, R
name: Schaper, D C
name: Meijer, S J
name: Kim, I
name: Vasilyev, S
name: Varner, R L
name: Barton, C J
Publisher: name: American Physical Society (APS)
Year: 2024

description: With excellent energy resolution and ultralow-level radiogenic backgrounds, the high-purity germanium detectors in the MAJORANA DEMONSTRATOR enable searches for several classes of exotic dark matter (DM) models. In this work, we report new experimental limits on keV-scale sterile neutrino DM via the transition magnetic moment from conversion to active neutrinos νs → νa. We report new limits on fermionic dark matter absorption (χ þ A → ν þ A) and sub-GeV DM-nucleus 3 → 2 scattering (χ þ χ þ A → ϕ þ A), and new exclusion limits for bosonic dark matter (axionlike particles and dark photons). These searches utilize the (1–100)-keV low-energy region of a 37.5-kg y exposure collected by the DEMONSTRATOR between May 2016 and November 2019 using a set of 76Ge-enriched detectors whose surface exposure time was carefully controlled, resulting in extremely low levels of cosmogenic activation.
Microphotus robustophallus Zaragoza-Caballero, Dominguez-Leon & Gonzalez-Ramirez 2021
Creators: name: Pérez-Hernández, Cisteil X.
name: Zaragoza-Caballero, Santiago
name: Romo-Galicia, Alberto
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lampyridae
Microphotus
Microphotus robustophallus

description: Microphotus robustophallus Zaragoza-Caballero, Domínguez-León & González-Ramírez, 2021
MEXICO: BS Endemic
description: Published as part of Pérez-Hernández, Cisteil X., Zaragoza-Caballero, Santiago & Romo-Galicia, Alberto, 2022, Updated checklist of the fireflies (Coleoptera: Lampyridae) of Mexico, pp. 291-317 in Zootaxa 5092 (3) on page 300, DOI: 10.11646/zootaxa.5092.3.3, http://zenodo.org/record/5881269
Basolateral amygdala neuropeptide Y system modulates binge ethanol consumption
Creators: name: Bendrath, Sophie C.
name: Yates, Elizabeth M.
name: Thiele, Todd E.
name: Robinson, Stacey L.
Publisher: name: Springer Nature
Year: 2023

description: Neuropeptide Y (NPY) signaling regulation of corticolimbic communication is known to modulate binge-like ethanol consumption in rodents. In this work we sought to assess the impact of intra-BLA NPY system modulation on binge-like ethanol intake and to assess the role of the NPY1R+ projection from the BLA to the mPFC in this behavior. We used “drinking-in-the-dark” (DID) procedures in C57BL6J mice to address these questions. First, the impact of intra-BLA administration of NPY on binge-like ethanol intake was assessed. Next, the impact of repeated cycles of DID intake on NPY1R expression in the BLA was assessed with use of immunohistochemistry (IHC). Finally, chemogenetic inhibition of BLA→mPFC NPY1R+ projections was assessed to determine if limbic communication with the mPFC was specifically involved in binge-like ethanol intake. Importantly, as both the BLA and NPY system are sexually dimorphic, both sexes were assessed in these studies. Intra-BLA NPY dose-dependently decreased binge-like ethanol intake in males only. Repeated DID reduced NPY1R expression in the BLA of both sexes. Silencing of BLA→mPFC NPY1R+ neurons significantly reduced binge-like ethanol intake in both sexes in a dose-dependent manner. We provide novel evidence that (1) intra-BLA NPY reduces binge-like ethanol intake in males; (2) binge-like ethanol intake reduces NPY1R levels in the BLA; and (3) chemogenetic inhibition of BLA→mPFC NPY1R+ neurons blunts binge-like drinking in male and female mice. These observations provide the first direct evidence that NPY signaling in the BLA, and specifically BLA communication with the mPFC, modulates binge-like ethanol consumption.
MOESM5 of Acute kidney injury in imported Plasmodium falciparum malaria
Creators: name: Koopmans, Liese
name: Wolfswinkel, Marlies
name: Hesselink, Dennis
name: Hoorn, Ewout
name: Koelewijn, Rob
name: Hellemond, Jaap
name: Genderen, Perry
Publisher: name: Figshare
Year: 2015
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Computational Biology

description: Additional file 5: Table S5. Multivariate logistic regression analysis of predictors for outcome Acute Kidney Injury (AKI) in imported P. falciparum malaria.
From polar night to midnight sun: exploring functional diversity of copepod communities in the Barents Sea
Creators: name: Durazzano, Tiziana
name: Svensen, Camilla
name: Visser, Andre
name: Søreide, Janne
name: Hop, Haakon
Publisher: name: Zenodo
Year: 2024

description: This presentation was held in March 2024 during the 7th International Zooplankton Production Symposium in Hobart (Australia) during the Session 10: Zooplankton in changing polar oceans. 

Abstract: Copepods dominate the zooplankton community in terms of species richness and numbers in sub-Arctic and Arctic seas. They are very successful in these strong seasonal environmentsand to assess the different expressions of functions performed by the copepods we are using atrait based approach. The aim is to gain insights into the composition and distribution of functional traits within the species pool and unravel relationships among functional traits, the environment, and thecommunity structure. We hypothesise that copepod communities will be differently shapedduring different times of the year and bear different associated functions. Data weregathered within the framework of the Nansen Legacy in the Barents Sea, encompassing theeastern Svalbard region, over four distinct campaigns, notably including the sparsely st udiedwinter season.To achieve the results we employed ordination methods, exploring the interconnection amongtraits, environment, and abundances. Furthermore, different functional diversity indices wereinvestigated to capture the seasonal variation, elucidating how the seasons impact theecological contributions of copepods and their ecosystem role. Finally, RLQ (co inertiaanalysis) was carried out to gain an integrated view.Our preliminary results show that despite strong seasonal variations, the pooled copepodcommunity assembly is rather resilient with little seasonal variability.In conclusion, by exploring the intricate relationships between copepods, their functionaltraits, and the environment, we are seeking a deeper understanding of the vital role copepodsplay in the face of seasonal variability in the Arctic.
Experimental investigations of anchorage capacity of precast concrete bridge barrier for Performance Level 2
Creators: name: Ngan, Caroline Lai Yung
Publisher: name: University of British Columbia
Year: 2008

description: In the last twenty years, the design requirements of bridge barriers have changed with the aim of improving the safety of commuters on the bridge. A majority of precast concrete bridge barriers (PCBB) on highway bridges in British Columbia were designed and installed in accordance with the 1988 Canadian Highway Bridge Design Code (CHBDC). To ensure that these barriers comply with the current code requirements, research and testing were deemed obligatory. In particular, the anchorage capacity of the parapet under the CHBDC design load warrants verification. A finite element model of the barrier was developed in ANSYS to study its structural response. Static testing of a set of barriers was carried out at the University of British Columbia to better understand the behaviour of the barrier. The experimental results were used to calibrate and verify the finite element model. Through the finite element model and experimental results, a simpler model has been developed in a formatted spreadsheet environment to allow better estimates of the anchorage capacity of different barrier designs. The model was scaled to a wider use for practicing engineers so to ease and improve the design of anchorages of precast concrete bridge barrier under Performance Level 2 loading in accordance with the Canadian Highway Bridge Design Code.
title: Stellungnahme zur Institutionellen Reakkreditierung (Promotionsrecht) der ESMT Berlin (European School of Management and Technology)
Creators: name: German Science And Humanities Council
Publisher: name: German Science and Humanities Council
Year: 2024
Subjects: Akkreditierung
Fachhochschulen
Hochschulen
Private Hochschulen
Promotion
Akkreditierungszeitraum 10 Jahre
Qualitätssicherung

description: Die ESMT Berlin (European School of Management and Technology) wird vom Wissenschaftsrat für die Dauer von zehn Jahren reakkreditiert. Die Entscheidung schließt das Promotionsrecht ein.
Als international ausgerichtete und forschungsorientierte Business School bietet die Hochschule ihren rd. 760 Studierenden konsekutive und weiterbildende Masterstudiengänge sowie ein eigenes strukturiertes Promotionsprogramm an.
Nelsonphotus Cicero 2006
Creators: name: Pérez-Hernández, Cisteil X.
name: Zaragoza-Caballero, Santiago
name: Romo-Galicia, Alberto
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lampyridae
Nelsonphotus

description: Genus Nelsonphotus Cicero, 2006
NAR: SO
description: Published as part of Pérez-Hernández, Cisteil X., Zaragoza-Caballero, Santiago & Romo-Galicia, Alberto, 2022, Updated checklist of the fireflies (Coleoptera: Lampyridae) of Mexico, pp. 291-317 in Zootaxa 5092 (3) on page 300, DOI: 10.11646/zootaxa.5092.3.3, http://zenodo.org/record/5881269
Wood frame building response to rapid onset flooding
Creators: name: Becker, Andrea
Publisher: name: University of British Columbia
Year: 2008

description: Floods are considered to be among of the deadliest, costliest and most common natural disasters. Rapid onset, catastrophic floods inundate the shore quickly and manifest as deep water with high velocities. The deep water and high velocities caused by these floods inflict great pressures and forces on the built and natural environments and pose a threat to human safety. Recent disasters such as Hurricane Katrina in the Southern United States and the Sumatra tsunami in the Indian Ocean have revealed that communities at risk require improved preparations for these types of dangerous events. Current building codes, design practices and disaster planning methods account for potential earthquake and wind loads on simple wood frame buildings typical of North American residential construction, however, flood impacts have not been considered in the same level of depth. The objectives of this research are to develop a theoretical model that describes flood impacts on wood frame residential buildings and relates building response to physical flood properties such as depth and velocity. This thesis provides a brief synopsis of previous approaches used to describe building response to flooding. An overview of the major loads caused by rapid onset flooding, along with a description of the structural system utilized in wood design to resist these forces is provided. The failure mechanisms considered and the model logic are described and applied to assess the response of a typical Canadian wood frame home to flood conditions that might be experienced in a rapid onset flood event like a tsunami. Building response results are discussed along with recommendations for future analysis and applications.
Additional file 13: Table S11. of Novel approach for identification of influenza virus host range and zoonotic transmissible sequences by determination of host-related associative positions in viral genome segments
Creators: name: Kargarfard, Fatemeh
name: Ashkan Sami
name: Mohammadi-Dehcheshmeh, Manijeh
name: Esmaeil Ebrahimie
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Listing the rules extracted from PB1-F2 protein of influenza in identification of host ranges. (DOCX 20 kb)
Cardiovascular Outcomes of α-Blockers vs 5-α Reductase Inhibitors for Benign Prostatic Hyperplasia
Creators: name: Pate, Virginia
name: Zhang, Jiandong
name: Friedlander, David F.
name: Stuermer, Til
name: Olawore, Oluwasolape
name: Latour, Chase D.
name: Funk, Michele Jonsson
name: Jensen, Brian C.
Publisher: name: American Medical Association (AMA)
Year: 2023

description: IMPORTANCE The most prescribed class of medications for benign prostatic hyperplasia (BPH) is α-blockers (ABs). However, the cardiovascular safety profile of these medications among patients with BPH is not well understood. OBJECTIVE To compare the safety of ABs vs 5-α reductase inhibitors (5-ARIs) for risk of adverse cardiovascular outcomes. DESIGN, SETTING, AND PARTICIPANTS This active comparator, new-user cohort study was conducted using insurance claims data from a 20% random sample of Medicare beneficiaries from 2007 to 2019 to evaluate the 1-year risk of adverse cardiovascular outcomes. Males aged 66 to 90 years were indexed into the cohort at new use of an AB or 5-ARI. Twelve months of continuous enrollment and at least 1 diagnosis code for BPH within 12 months prior to initiation were required. Data were analyzed from January 2007 through December 2019. EXPOSURES Exposure was defined by a qualifying prescription fill for an AB or 5-ARI after at least 12 months without a prescription for these drug classes. MAIN OUTCOMES AND MEASURES Follow-up began at a qualified refill for the study drug. Primary study outcomes were hospitalization for heart failure (HF), composite major adverse cardiovascular events (MACE; hospitalization for stroke, myocardial infarction, or death), composite MACE or hospitalization for HF, and death. Inverse probability of treatment and censoring-weighted 1-year risks, risk ratios (RRs), and risk differences (RDs) were estimated for each outcome. RESULTS Among 189 868 older adult males, there were 163 829 patients initiating ABs (mean [SD] age, 74.6 [6.2] years; 579 American Indian or Alaska Native [0.4%], 5890 Asian or Pacific Islander [3.6%], 9179 Black [5.6%], 10 610 Hispanic [6.5%], and 133 510 non-Hispanic White [81.5%]) and 26 039 patients initiating 5-ARIs (mean [SD] age, 75.3 [6.4] years; 76 American Indian or Alaska Native [0.3%], 827 Asian or Pacific Islander [3.2%], 1339 Black [5.1%], 1656 Hispanic [6.4%], and 21 605 non-Hispanic White [83.0%]). ABs compared with 5-ARIs were associated with an increased 1-year risk of MACE (8.95%[95%CI, 8.81%-9.09%] vs 8.32%[95%CI, 7.92%-8.72%]; RR = 1.08 [95%CI, 1.02-1.13]; RD per 1000 individuals = 6.26 [95%CI, 2.15-10.37]), composite MACE and HF (RR = 1.07; [95%CI, 1.03-1.12]; RD per 1000 individuals = 7.40 [95%CI, 2.88-11.93 ]), and death (RR = 1.07; [95%CI, 1.01-1.14]; RD per 1000 individuals = 3.85 [95%CI, 0.40-7.29]). There was no difference in risk for HF hospitalization alone. CONCLUSIONS AND RELEVANCE These results suggest that ABs may be associated with an increased risk of adverse cardiovascular outcomes compared with 5-ARIs. If replicated with more detailed confounder data, these results may have important public health implications given these medications’ widespread use.
Nelsonphotus aridus Cicero 2006
Creators: name: Pérez-Hernández, Cisteil X.
name: Zaragoza-Caballero, Santiago
name: Romo-Galicia, Alberto
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lampyridae
Nelsonphotus
Nelsonphotus aridus

description: Nelsonphotus aridus Cicero, 2006
USA; MEXICO: SO
description: Published as part of Pérez-Hernández, Cisteil X., Zaragoza-Caballero, Santiago & Romo-Galicia, Alberto, 2022, Updated checklist of the fireflies (Coleoptera: Lampyridae) of Mexico, pp. 291-317 in Zootaxa 5092 (3) on page 300, DOI: 10.11646/zootaxa.5092.3.3, http://zenodo.org/record/5881269
Modeling Barrier Properties of Intestinal Mucus Reinforced with IgG and Secretory IgA against Motile Bacteria
Creators: name: Forest, M. Gregory
name: Lai, Samuel K.
name: Schiller, Jennifer L.
name: Xu, Feifei
name: Schroeder, Holly A.
name: Newby, Jay M.
name: Wessler, Timothy
name: Chen, Alex
Publisher: name: American Chemical Society (ACS)
Year: 2019

description: The gastrointestinal (GI) tract is lined with a layer of viscoelastic mucus gel, characterized by a dense network of entangled and cross-linked mucins together with an abundance of antibodies (Ab). Secretory IgA (sIgA), the predominant Ab isotype in the GI tract, is a dimeric molecule with 4 antigen-binding domains capable of inducing efficient clumping of bacteria, or agglutination. IgG, another common Ab at mucosal surfaces, can cross-link individual viruses to the mucin mesh through multiple weak bonds between IgG-Fc and mucins, a process termed muco-trapping. Relative contributions by agglutination versus muco-trapping in blocking permeation of motile bacteria through mucus remain poorly understood. Here, we developed a mathematical model that takes into account physiologically relevant spatial dimensions and time scales, binding and unbinding rates between Ab and bacteria as well as between Ab and mucins, the diffusivities of Ab, and run-tumble motion of active bacteria. Our model predicts both sIgA and IgG can accumulate on the surface of individual bacteria at sufficient quantities and rates to enable trapping individual bacteria in mucins before they penetrate the mucus layer. Furthermore, our model predicts that agglutination only modestly improves the ability for antibodies to block bacteria permeation through mucus. These results suggest that while sIgA is the most potent Ab isotype overall at stopping bacterial penetration, IgG may represent a practical alternative for mucosal prophylaxis and therapy. Our work improves the mechanistic understanding of Ab-enhanced barrier properties of mucus and highlights the ability for muco-trapping Ab to protect against motile pathogens at mucosal surfaces.
Prolutacea Cicero 2006
Creators: name: Pérez-Hernández, Cisteil X.
name: Zaragoza-Caballero, Santiago
name: Romo-Galicia, Alberto
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lampyridae
Prolutacea

description: Genus Prolutacea Cicero, 2006
NTR: PL
description: Published as part of Pérez-Hernández, Cisteil X., Zaragoza-Caballero, Santiago & Romo-Galicia, Alberto, 2022, Updated checklist of the fireflies (Coleoptera: Lampyridae) of Mexico, pp. 291-317 in Zootaxa 5092 (3) on page 300, DOI: 10.11646/zootaxa.5092.3.3, http://zenodo.org/record/5881269
Additional file 4: Table S3. of Categorizing diffuse parenchymal lung disease in children
Creators: name: Griese, Matthias
name: Irnstetter, Armin
name: Hengst, Meike
name: Burmester, Helen
name: Nagel, Felicitas
name: Ripper, Jan
name: Feilcke, Maria
name: Pawlita, Ingo
name: Gothe, Florian
name: Kappler, Matthias
name: Schams, Andrea
name: Wesselak, Traudl
name: Rauch, Daniela
name: Wittmann, Thomas
name: Lohse, Peter
name: Brasch, Frank
name: KrĂśner, Carolin
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Summary of reasons for incorrect categorization. (DOCX 15Â kb)