cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
sj-pdf-5-uro-10.1177_2051415821995107 – Supplemental material for Correlation of Likert scores III–V with increasingly worse pathology in radical prostatectomy specimens significant only for men aged <60 or PSAD >0.15, with age <60 as good as PSAD <0.15 at discriminating lower risk in Likert III
Creators: name: Ord, Jonathan J
name: Crockett, Matthew
name: Green, Jes
name: Bell, Lawrence TO
name: Hicks, Victoria
name: Crawford-Smith, Hugh
name: Morss, Amanda
name: Poulton, Lucinda
name: Bilgy Pellisery
name: Hayes, Mark
name: Linmarie Ludeman
name: Beasley, Matthew
name: Fulmali, Rahul
name: Anniss, Mark
name: Barnes, Elizabeth
name: Foy, Christopher
name: Nayar, Richard C
name: McMeekin, Faith
name: Gilbert, Hugh
name: Okeke, Aloysius
name: Mehmood Akhtar
name: Biral Patel
name: Eaton, Jonathan
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 111708 Health and Community Services
subject: FOS: Health sciences
subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: FOS: Clinical medicine
subject: 111799 Public Health and Health Services not elsewhere classified

description: Supplemental material, sj-pdf-5-uro-10.1177_2051415821995107 for Correlation of Likert scores III–V with increasingly worse pathology in radical prostatectomy specimens significant only for men aged <60 or PSAD >0.15, with age <60 as good as PSAD <0.15 at discriminating lower risk in Likert III by Jonathan J Ord, Matthew Crockett, Jes Green, Lawrence TO Bell, Victoria Hicks, Hugh Crawford-Smith, Amanda Morss, Lucinda Poulton, Bilgy Pellisery, Mark Hayes, Linmarie Ludeman, Matthew Beasley, Rahul Fulmali, Mark Anniss, Elizabeth Barnes, Christopher Foy, Richard C Nayar, Faith McMeekin, Hugh Gilbert, Aloysius Okeke, Mehmood Akhtar, Biral Patel and Jonathan Eaton in Journal of Clinical Urology
"When God Wants Dis/obedience: Wrestling with Genesis 22," Adventist Today 29.3 (2021): 12-15.
Creators: name: Korpman, Matthew
Publisher: name: Humanities Commons
Year: 2021

description: The passage of Genesis 22 is reviewed and examined through four interpretive lenses: Narrative Criticism, Canonical Criticism, Historical Criticism, and a Hermeneutic of Confrontation. After reviewing extensively the history of child sacrifice in Ancient Israel, the argument of Omri Boehm's reconstructed text (lacking the angelic speeches), and the interpretation offered by Jesus in John 8, readers are encouraged to face the reality that they must make choices in how they read stories in the Bible, and the consequences those choices bring in the portrait of God they help paint.
sj-docx-1-hpp-10.1177_1524839921996350 – Supplemental material for Systematic Review of Arts-Based Interventions to Address Suicide Prevention and Survivorship in Australia, Canada, the United Kingdom, and the United States of America
Creators: name: Sonke, Jill
name: Rodríguez, Lourdes
name: Valerio-Shewmaker, Melissa A.
name: Sams, Kelley
name: Morgan-Daniel, Jane
name: Pumariega, Andres
name: Faryal Mallick
name: Pesata, Virginia
name: Olsen, Nicola
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 111708 Health and Community Services
subject: FOS: Health sciences
subject: 111799 Public Health and Health Services not elsewhere classified
subject: Sociology
subject: FOS: Sociology

description: Supplemental material, sj-docx-1-hpp-10.1177_1524839921996350 for Systematic Review of Arts-Based Interventions to Address Suicide Prevention and Survivorship in Australia, Canada, the United Kingdom, and the United States of America by Jill Sonke, Kelley Sams, Jane Morgan-Daniel, Andres Pumariega, Faryal Mallick, Virginia Pesata and Nicola Olsen in Health Promotion Practice
Pseudoscalar portals into the dark sector
Creators: name: Kahlhoefer, Felix
Publisher: name: Deutsches Elektronen-Synchrotron, DESY, Hamburg
Year: 2017

description: CERN-EPFL-Korea Theory Institute "New Physics at the Intensity Frontier", Geneva, CERN, Switzerland, 20 Feb 2017 - 24 Feb 2017
sj-pdf-5-pac-10.1177_18344909211012613 - Supplemental material for Numerosity representation in a deep convolutional neural network
Creators: name: Zhou, Cihua
name: Xu, Wei
name: Liu, Yujie
name: Xue, Zhichao
name: Chen, Rui
name: Zhou, Ke
name: Liu, Jia
Publisher: name: SAGE Journals
Year: 2021
Subjects: Psychology not elsewhere classified

description: Supplemental material, sj-pdf-5-pac-10.1177_18344909211012613 for Numerosity representation in a deep convolutional neural network by Cihua Zhou, Wei Xu, Yujie Liu, Zhichao Xue, Rui Chen, Ke Zhou and Jia Liu in Journal of Pacific Rim Psychology
Two complementing in vivo selection systems based on CCA-trimming exonucleases as a tool to monitor, select and evaluate enzymatic features of tRNA nucleotidyltransferases
Creators: name: Wellner, Karolin
name: Gnauck, Josefine
name: Bernier, Dorian
name: Bernhart, Stephan H.
name: Betat, Heike
name: Mörl, Mario
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified

description: tRNA nucleotidyltransferase represents a ubiquitous and essential activity that adds the indispensable CCA triplet to the 3’-end of tRNAs. To fulfill this function, the enzyme contains a set of highly conserved motifs whose coordinated interplay is crucial for the sequence-specific CCA polymerization. In the human enzyme, alterations within these regions have been shown to lead to the manifestation of disease. Recently, we developed an in vivo screening system that allows for the selection and analysis of tRNA nucleotidyltransferase variants by challenging terminal AMP incorporation into tRNA during induced RNase T-catalyzed CCA-decay. Here, we extend this method for screening of full CCA-end repair by utilizing the CCA-trimming activity of exonuclease LCCR4. To demonstrate the combined potential of these two in vivo selection systems, we applied a semi-rational library design to investigate the mode of operation of catalytically important motifs in the human CCA-adding enzyme. This approach revealed unexpected requirements for amino acid composition in two motifs and gives new insights into the mechanism of CCA addition. The data show the potential of these RNase-based screening systems, as they allow the detection of enzyme variations that would not have been identified by a conventional rational approach. Furthermore, the combination of both RNase T and LCCR4 systems can be used to investigate and dissect the effects of pathogenic mutations on C- and A-addition.
"More Than An Afterthought: Adventists Addressing Climate Change," Adventist Today 30.1 (2022): 21-23.
Creators: name: Korpman, Matthew
Publisher: name: Humanities Commons
Year: 2022

description: A survey of Adventist church statements regarding church policy in the North American Division and World Church regarding Climate Change. It will be argued that unlike other policies the Adventist church supports, its statements on Climate Change lack the typical biblical support common for other initiatives and indicates a lack of spiritual commitment to the issue they seemingly support. A call for change is suggested.
Exploring RNA modifications in infectious non-coding circular RNAs
Creators: name: Vopalensky, Pavel
name: Škríba, Anton
name: Chiumenti, Michela
name: Ďuričeková, Lucia
name: Šimonová, Anna
name: Lukšan, Ondřej
name: Di Serio, Francesco
name: Navarro, Beatriz
name: Cahova, Hana
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology
subject: Computational Biology

description: Viroids, small circular non-coding RNAs, act as infectious pathogens in higher plants, demonstrating high stability despite consisting solely of naked RNA. Their dependence of replication on host machinery poses the question of whether RNA modifications play a role in viroid biology. Here, we explore RNA modifications in the avocado sunblotch viroid (ASBVd) and the citrus exocortis viroid (CEVd), representative members of viroids replicating in chloroplasts and the nucleus, respectively, using LC – MS and Oxford Nanopore Technology (ONT) direct RNA sequencing. Although no modification was detected in ASBVd, CEVd contained approximately one m6A per RNA molecule. ONT sequencing predicted three m6A positions. Employing orthogonal SELECT method, we confirmed m6A in two positions A353 and A360, which are highly conserved among CEVd variants. These positions are located in the left terminal region of the CEVd rod-like structure where likely RNA Pol II and and TFIIIA-7ZF bind, thus suggesting potential biological role of methylation in viroid replication.
Online supplementary file 1 - Supplemental material for The Accuracy and Completeness of Mohs Surgery Referrals of Nonmelanoma Skin Cancers
Creators: name: Beaulieu, Valérie
name: Alain, Jimmy
name: Simonyan, David
name: Marie-Michèle Blouin
Publisher: name: SAGE Journals
Year: 2021
Subjects: Medicine

description: Supplemental material, Online supplementary file 1, for The Accuracy and Completeness of Mohs Surgery Referrals of Nonmelanoma Skin Cancers by Valérie Beaulieu, Jimmy Alain, David Simonyan and Marie-Michèle Blouin in Journal of Cutaneous Medicine and Surgery
Iron 'large'? knife (not Anglo-Saxon?)
Creators: name: Hamerow, Helena
Publisher: name: University of Oxford
Year: 2021
Subjects: Archaeology

description: Iron knife, length 20.3cm. Long narrow straight blade with tang simply an extension of it. Single sided.Probably not Anglo-Saxon at all.One of two knives labeled \Kn.U.24\" by SCH. This one is probably an afterthought. – D.H."
sj-pdf-1-nms-10.1177_14614448211012377 – Supplemental material for Fact-checking, reputation, and political falsehoods in Italy and the United States
Creators: name: Ceron, Andrea
name: Carrara, Paride
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 200199 Communication and Media Studies not elsewhere classified
subject: FOS: Media and communications

description: Supplemental material, sj-pdf-1-nms-10.1177_14614448211012377 for Fact-checking, reputation, and political falsehoods in Italy and the United States by Andrea Ceron and Paride Carrara in New Media & Society
Evolution of the RNA alternative decay cis element into a high-affinity target for the immunomodulatory protein Roquin
Creators: name: Tants, Jan-Niklas
name: Friedrich, Katharina
name: Neumann, Jasmina
name: Schlundt, Andreas
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Molecular Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Cancer
subject: Virology
subject: Computational Biology

description: RNA cis elements play pivotal roles in regulatory processes, e.g. in transcriptional and translational regulation. Two stem-looped cis elements, the constitutive and alternative decay elements (CDE and ADE, respectively) are shape-specifically recognized in mRNA 3’ untranslated regions (UTRs) by the immune-regulatory protein Roquin. Roquin initiates mRNA decay and contributes to balanced transcript levels required for immune homoeostasis. While the interaction of Roquin with several CDEs is described, our knowledge about ADE complex formation is limited to the mRNA of Ox40, a gene encoding a T-cell costimulatory receptor. The Ox40 3’UTR comprises both a CDE and ADE, each sufficient for Roquin-mediated control. Opposed to highly conserved and abundant CDE structures, ADEs are rarer, but predicted to exhibit a greater structural heterogeneity. This raises the question of how and when two structurally distinct cis elements evolved as equal target motifs for Roquin. Using an interdisciplinary approach, we here monitor the evolution of sequence and structure features of the Ox40 ADE across species. We designed RNA variants to probe en-detail determinants steering Roquin-RNA complex formation. Specifically, those reveal the contribution of a second RNA-binding interface of Roquin for recognition of the ADE basal stem region. In sum, our study sheds light on how the conserved Roquin protein selected ADE-specific structural features to evolve a second high-affinity mRNA target cis element relevant for adaptive immune regulation. As our findings also allow expanding the RNA target spectrum of Roquin, the approach can serve a paradigm for understanding RNA-protein specificity through back-tracing the evolution of the RNA element.
Copper styca of Ethelred
Creators: name: Hamerow, Helena
Publisher: name: University of Oxford
Year: 2021
Subjects: Archaeology

description: Styca or half-farthing of Ethelred king of Northumbria AD 840-8. 'Ethelred Rex', a plain cross in the field and Ethelred - a plain cross - both obv. and rev. in pearled border.
Supplemental Material, sj-pdf-1-ahp-10.1177_08901171211012524 - The Impact of Theory in HPV Vaccination Promotion Research: A Systematic Review and Meta-Analysis
Creators: name: Xizhu Xiao
name: Lee, Danielle Ka Lai
name: Wong, Rachel Min
name: Porismita Borah
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 111799 Public Health and Health Services not elsewhere classified
subject: FOS: Health sciences

description: Supplemental Material, sj-pdf-1-ahp-10.1177_08901171211012524 for The Impact of Theory in HPV Vaccination Promotion Research: A Systematic Review and Meta-Analysis by Xizhu Xiao, Danielle Ka Lai Lee, Rachel Min Wong and Porismita Borah in American Journal of Health Promotion
sj-pdf-1-aut-10.1177_13623613211012819 – Supplemental material for “Camouflaging” by adolescent autistic girls who attend both mainstream and specialist resource classes: Perspectives of girls, their mothers and their educators
Creators: name: Halsall, Joanne
name: Clarke, Chris
name: Crane, Laura
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: FOS: Clinical medicine
subject: 111799 Public Health and Health Services not elsewhere classified
subject: FOS: Health sciences
subject: Education
subject: 130312 Special Education and Disability
subject: FOS: Educational sciences

description: Supplemental material, sj-pdf-1-aut-10.1177_13623613211012819 for “Camouflaging” by adolescent autistic girls who attend both mainstream and specialist resource classes: Perspectives of girls, their mothers and their educators by Joanne Halsall, Chris Clarke and Laura Crane in Autism
Two complementing in vivo selection systems based on cca-trimming exonucleases as a tool to monitor, select and evaluate enzymatic features of tRNA nucleotidyltransferases
Creators: name: Wellner, Karolin
name: Gnauck, Josefine
name: Bernier, Dorian
name: Bernhart, Stephan H.
name: Betat, Heike
name: Mörl, Mario
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified

description: tRNA nucleotidyltransferase represents a ubiquitous and essential activity that adds the indispensable CCA triplet to the 3’-end of tRNAs. To fulfill this function, the enzyme contains a set of highly conserved motifs whose coordinated interplay is crucial for the sequence-specific CCA polymerization. In the human enzyme, alterations within these regions have been shown to lead to the manifestation of disease. Recently, we developed an in vivo screening system that allows for the selection and analysis of tRNA nucleotidyltransferase variants by challenging terminal AMP incorporation into tRNA during induced RNase Tcatalyzed CCA-decay. Here, we extend this method for screening of full CCA-end repair by utilizing the CCA-trimming activity of exonuclease LCCR4. To demonstrate the combined potential of these two in vivo selection systems, we applied a semi-rational library design to investigate the mode of operation of catalytically important motifs in the human CCA-adding enzyme. This approach revealed unexpected requirements for amino acid composition in two motifs and gives new insights into the mechanism of CCA addition. The data show the potential of these RNase-based screening systems, as they allow the detection of enzyme variations that would not have been identified by a conventional rational approach. Furthermore, the combination of both RNase T and LCCR4 systems can be used to investigate and dissect effects of pathogenic mutations on C- and Aaddition.
Exploring RNA modifications in infectious non-coding circular RNAs
Creators: name: Vopalensky, Pavel
name: Škríba, Anton
name: Chiumenti, Michela
name: Ďuričeková, Lucia
name: Šimonová, Anna
name: Lukšan, Ondřej
name: di Serio, Francesco
name: Navarro, Beatriz
name: Cahova, Hana
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology
subject: Computational Biology

description: Viroids, small circular non-coding RNAs, act as infectious pathogens in higher plants, demonstrating high stability despite consisting solely of naked RNA. Their dependence of replication on host machinery poses the question of whether RNA modifications play a role in viroid biology. Here, we explore RNA modifications in the avocado sunblotch viroid (ASBVd) and the citrus exocortis viroid (CEVd), representative members of viroids replicating in chloroplasts and the nucleus, respectively, using LC – MS and Oxford Nanopore Technology (ONT) direct RNA sequencing. Although no modification was detected in ASBVd, CEVd contained approximately one m6A per RNA molecule. ONT sequencing predicted three m6A positions. Employing orthogonal SELECT method, we confirmed m6A in two positions A353 and A360, which are highly conserved among CEVd variants. These positions are located in the left terminal region of the CEVd rod-like structure where likely RNA Pol II and and TFIIIA-7ZF bind, thus suggesting potential biological role of methylation in viroid replication.
sj-pdf-1-wso-10.1177_17474930211007671 - Supplemental material for WITHDRAWN: Decompressive surgery in patients with malignant middle cerebral artery infarction: A randomized, controlled trial in a Turkish population (Demitur trial)
Creators: name: Kumral, Emre
name: Hadiye Sirin
name: Ayşe Sağduyu
name: Ayşe Güler
name: Özdamar, Nurcan
name: Köse, Timur
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: Cardiology
subject: Medicine
subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine

description: Supplemental material, sj-pdf-1-wso-10.1177_17474930211007671 for WITHDRAWN: Decompressive surgery in patients with malignant middle cerebral artery infarction: A randomized, controlled trial in a Turkish population (Demitur trial) by Emre Kumral, Hadiye Sirin, Ayşe Sağduyu, Ayşe Güler, Nurcan Özdamar and Timur Köse in International Journal of Stroke
sj-pdf-1-pie-10.1177_09544089211014407 - Supplemental material for Comparison of minimum quantity lubrication and wet milling based on energy consumption modeling
Creators: name: Masuod Bayat
name: Abootorabi, Mohammad Mahdi
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 99999 Engineering not elsewhere classified
subject: FOS: Other engineering and technologies
subject: 91299 Materials Engineering not elsewhere classified
subject: FOS: Materials engineering

description: Supplemental material, sj-pdf-1-pie-10.1177_09544089211014407 for Comparison of minimum quantity lubrication and wet milling based on energy consumption modeling by Masuod Bayat and Mohammad Mahdi Abootorabi in Proceedings of the Institution of Mechanical Engineers, Part E: Journal of Process Mechanical Engineering
sj-pdf-2-pie-10.1177_09544089211014407 - Supplemental material for Comparison of minimum quantity lubrication and wet milling based on energy consumption modeling
Creators: name: Masuod Bayat
name: Abootorabi, Mohammad Mahdi
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 99999 Engineering not elsewhere classified
subject: FOS: Other engineering and technologies
subject: 91299 Materials Engineering not elsewhere classified
subject: FOS: Materials engineering

description: Supplemental material, sj-pdf-2-pie-10.1177_09544089211014407 for Comparison of minimum quantity lubrication and wet milling based on energy consumption modeling by Masuod Bayat and Mohammad Mahdi Abootorabi in Proceedings of the Institution of Mechanical Engineers, Part E: Journal of Process Mechanical Engineering
LncRNA HOTAIR promotes aerobic glycolysis by recruiting Lin28 to induce inflammation and apoptosis in acute lung injury
Creators: name: Xie, Junjie
name: Zheng, Zhicong
name: Wang, Bin
name: Zhang, Jianfang
name: Jiang, Junqi
name: Wu, Fengde
name: Zhong, Xiangming
name: Chen, Jianfeng
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Acute lung injury (ALI) is a life-threatening condition with high rates of morbidity and mortality. Recently, there has been growing evidence suggesting a link between lncRNA HOTAIR and ALI. Nonetheless, the precise role and mechanism of lncRNA HOTAIR in ALI remain to be fully elucidated. siHOTAIR transfection, qPCR detection (HOTAIR), ELISA (TNF-α, IL-6, and IL-1β), Lactate detection, Glucose uptake experiment, Cell Apoptosis Analysis, Fluorescence in situ hybridization (FISH) assay. Through siHOTAIR transfection, we discovered that HOTAIR plays a role in the secretion of inflammatory factors in ALI and further regulates glucose uptake and metabolism in lung epithelial cells. Moreover, a comparison between HOTAIR knockdown cells and HOTAIR overexpression cells revealed that HOTAIR promotes cellular aerobic sugar metabolism, leading to increased secretion of inflammatory factors and cell apoptosis. Our in-depth research also identified an interaction between HOTAIR and the LIN28 protein. Knocking down HOTAIR resulted in the downregulation of LIN28 protein expression, which subsequently inhibited the expression of the glucose transporter GLUT1. This indicates that HOTAIR facilitates glucose uptake and boosts cellular aerobic glycolysis by modulating the LIN28 protein, thereby promoting inflammation and apoptosis in acute lung injury. The research findings presented in this article offer significant insights into the function of HOTAIR in ALI and suggest a potential therapeutic target for the treatment of this condition.
Human teeth
Creators: name: Hamerow, Helena
Publisher: name: University of Oxford
Year: 2021
Subjects: Archaeology

description: Collection of human teeth in a box labelled 'human teeth from the Anglo-Saxon grave in Kent: Faussett Collection'. Probably not all from one skeleton, but if so then one has to say just a young adult. 3rd molars erupted, but very worn. 23 teeth altogether.
Additional file 2 of Population genetic analyses highlight an eastward dispersal of Puccinia striiformis f. sp. tritici from the Shaanxi province to the North China Plain
Creators: name: Zhou, Congying
name: Lv, Xuan
name: Qi, Xinlei
name: Abdullah, Ahsan
name: Sun, Qiuyu
name: Ding, Mingliang
name: Bai, Yingwen
name: Yang, Ziqian
name: Wang, Zhifang
name: Ma, Zhanhong
Publisher: name: figshare
Year: 2024
Subjects: subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified

description: Additional file 2: Figure S1. K value diagram with optimal K = 3 by Bayesian analysis based on STRUCTURE 2.3.3 software. Figure S2. Population structure of Puccinia striiformis f. sp. tritici populations based on STRUCTURE 2.3.3 software when K = 2 and K = 3 (From No. 1 to No. 17, they represent populations from Ningjin (HBA1), Daming (HBB1), Dancheng (HNA1), Xihua (HNA2), Lankao (HNB1), Fushan (SDA1), Yuncheng (SDB1), Mei (SXA1), Qishan (SXA2), Fengxiang (SXA3), Fufeng (SXA4), Long (SXA5), Qianyang (SXA6), Feng (SXA7), Xiyi (SXB1), Zhouzhi (SXB2), and Chenggu (SXC1), respectively). Figure S3. Histograms obtained by “Poppr” package in R program 4.2.1 showing Dancheng (HNA1), Fengxiang (SXA3), and Zhouzhi (SXB2) populations with the possibility of sexual recombination.
sj-pdf-1-ejo-10.1177_11206721211014728 – Supplemental material for The impact of vitrectomy on outcomes achieved with 0.19 mg fluocinolone acetonide implant in patients with diabetic macular edema
Creators: name: Augustin, Albert J
name: Bopp, Silvia
name: Fechner, Martin
name: Holz, Frank G
name: Sandner, Dirk
name: Andrea-M Winkgen
name: Khoramnia, Ramin
name: Neuhann, Thomas
name: Warscher, Markus
name: Spitzer, Martin S
name: Sekundo, Walter
name: Seitz, Berthold
name: Duncker, Tobias
name: Ksinsik, Christian
name: Höh, Helmut
Publisher: name: SAGE Journals
Year: 2021
Subjects: Medicine

description: Supplemental material, sj-pdf-1-ejo-10.1177_11206721211014728 for The impact of vitrectomy on outcomes achieved with 0.19 mg fluocinolone acetonide implant in patients with diabetic macular edema by Albert J Augustin, Silvia Bopp, Martin Fechner, Frank G Holz, Dirk Sandner, Andrea-M Winkgen, Ramin Khoramnia, Thomas Neuhann, Markus Warscher, Martin S Spitzer, Walter Sekundo, Berthold Seitz, Tobias Duncker, Christian Ksinsik and Helmut Höh in European Journal of Ophthalmology
"Holy Transgression: Breaking the Sabbath in Order to Keep It," Spectrum 50.3 (2022): 14-23.
Creators: name: Korpman, Matthew
Publisher: name: Humanities Commons
Year: 2022

description: An article that explores the theology of Sabbath keeping, and the biblical arguments for when God wishes his laws to be violated. A theology of the Sabbath, if it is to serve God’s desire in Scripture, must focus on the why of Sabbath, not the when. It cannot rely on arguments from authority or the Law as a cheap excuse for not engaging in arguments regarding Christ’s emphasis on its utility. A review of Jesus’ teachings about the Sabbath, both canonical and apocryphal, reveals a surprising consistency and emphasis on the same paradox: the Law of God will not pass away, but it will indeed at times be broken out of faith, a faith that fulfills its original purposes.
Medieval? buckle or ring-brooch
Creators: name: Hamerow, Helena
Publisher: name: University of Oxford
Year: 2021
Subjects: Archaeology

description: Bronze ring brooch. Bronze buckle, diam. 4.8cm. Simple round sectioned ring, with cast loop, having loop on back and raised panel of ridge and groove below back of tongue.No Mayer card. ?ProvenanceAlmost certainly Medieval. cf. London Museum Medieval Cat., pl. lxxvii, 1-2, pp. 273ff. Mainly 13th century.
Transkulturelle Kompetenzen: Der Nutzen Von Transkulturellen Kompetenzen In Global Tätigen Kmu In Den Deutschsprachigen Ländern
Creators: name: Meerholz, Andrea
Publisher: name: Zenodo
Year: 2011

description: Keine Beschreibung.
description: + Code Diss LU: hslusa mas mdi + Fussnote: Masterarbeit Master of Advanced Studies, Hochschule Luzern - Soziale Arbeit, Managing Diversity, 2011
Cellular Response to Semi-ordered and Biomimetic Nanotubular Surfaces
Creators: name: Ho, William
Publisher: name: Université d'Ottawa / University of Ottawa
Year: 2018
Subjects: Nanotubes
Stem cells

description: Understanding cell behavior at the material-host tissue interface is a fundamental prerequisite for designing the next generation of biomaterials capable of directing cellular events towards a desired biological outcome (e.g. faster tissue integration). In addition, unraveling the relationship between cell activity and nanoscale surface features will further the present knowledge of the fundamental cellular mechanisms that control how cells sense and respond to natural (e.g. extracellular matrix) and synthetic (e.g. biomaterials) surfaces. It is now well-known that the nanoscale physicochemical features of surfaces dictate cell fate by affecting phenomena such as proliferation, differentiation, genetic transcription and protein translation. In particular, nanotopographical features play a pivotal role during cell-surface interactions by exerting a direct mechanotransductive effect on cells, which, in turn, dictate biochemical signaling. In this context, several studies have addressed different aspects of the relationships between nanofeatures and specific cellular functions, including morphological changes, the establishment of focal adhesions (FAs, clusters of adhesion molecules that regulate cell structure and activity, determining how cells sense and respond to natural and synthetic substrates) and differentiation. However, the precise interplay between the morphological characteristics of nontopographical features not only on the surface but also along a third dimension (height) and cellular response still needs to be fully elucidated. Once revealed, such knowledge will shed new light on how cells sense and respond to 2- and 3-dimensional nanoscale patterns. In this context, anodization, a simple yet effective electrochemical treatment, allows to engender on titanium, the gold standard in medicine, arrays of nanotubes with tailor-made diameters. Notably, although nanotubular surfaces on anodized titanium have been extensively studied in relation to their effect on cell response, none of the previous studies has precisely assessed the effects of the morphological features and geometrical arrangement of the nanotubes. This is an important aspect, since the morphological characteristics and the spatial placement of nanofeatures has been shown to control cell response. In addition, by employing the same technique (i.e. anodization), a 3-dimensional hierarchical surface that mimics the frustule (i.e. silicified cell wall) of diatoms (a type of microalgae) can be created. Aside from enabling, for the first time, cellular studies on such bioinspired surface, this hierarchical nanoscale substrate will also allow to probe the effects of a 2-tier nanotopographical gradient along the depth of the nanotubular layer.
The regulatory roles of RNA-binding proteins in the tumour immune microenvironment of gastrointestinal malignancies
Creators: name: Li, Dongqi
name: Chu, Xiangyu
name: Liu, Weikang
name: Ma, Yongsu
name: Tian, Xiaodong
name: Yang, Yinmo
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Cancer
subject: Hematology

description: The crosstalk between the tumour immune microenvironment (TIME) and tumour cells promote immune evasion and resistance to immunotherapy in gastrointestinal (GI) tumours. Post-transcriptional regulation of genes is pivotal to GI tumours progression, and RNA-binding proteins (RBPs) serve as key regulators via their RNA-binding domains. RBPs may exhibit either anti-tumour or pro-tumour functions by influencing the TIME through the modulation of mRNAs and non-coding RNAs expression, as well as post-transcriptional modifications, primarily N6-methyladenosine (m6A). Aberrant regulation of RBPs, such as HuR and YBX1, typically enhances tumour immune escape and impacts prognosis of GI tumour patients. Further, while targeting RBPs offers a promising strategy for improving immunotherapy in GI cancers, the mechanisms by which RBPs regulate the TIME in these tumours remain poorly understood, and the therapeutic application is still in its early stages. This review summarizes current advances in exploring the roles of RBPs in regulating genes expression and their effect on the TIME of GI tumours, then providing theoretical insights for RBP-targeted cancer therapies.
Copper-alloy bowl
Creators: name: Hamerow, Helena
Publisher: name: University of Oxford
Year: 2021
Subjects: Archaeology

description: Mayer card: Anglo-Saxon bronze dish, the bottom of it now separate, locality unknown and uncertain whether from Rolfe or Faussett Collections. It is exactly like the specimen engraved on pl. x of Akerman's 'Remains of Pagan Saxondom'.(SCH: this is a Coptic bowl with openwork footstand)11 1/2 in. diam. 2 handles.
The LARP6 La module from Tetrabaena socialis reveals structural and functional differences from plant and animal LARP6 homologues
Creators: name: Lewis, Emily M.
name: Becker, Olga
name: Symons, Alexis N.
name: LaCoss, Cora
name: Baclig, A. Jasmine
name: Guzman, Avery
name: Sanders, Charles
name: Gonzalez, Leticia
name: Warner, Lisa R.
name: Lewis, Karen A.
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Plant Biology
subject: FOS: Biological sciences
subject: Virology
subject: Computational Biology

description: This study identified the LARP6 La Module from Tetrabaena socialis (T. socialis), a four-celled green algae, in an effort to better understand the evolution of LARP6 structure and RNA-binding activity in multicellular eukaryotes. Using a combination of sequence alignments, domain boundary screens, and structural modelling, we recombinantly expressed and isolated the TsLARP6 La Module to > 98% purity for in vitro biochemical characterization. The La Module is stably folded and exerts minimal RNA binding activity against single-stranded homopolymeric RNAs. Surprisingly, it exhibits low micromolar binding affinity for the vertebrate LARP6 cognate ligand, a bulged-stem loop found in the 5’UTR of collagen type I mRNA, but does not bind double-stranded RNAs of similar size. These result suggests that the TsLARP6 La Module may prefer structured RNA ligands. In contrast, however, the TsLARP6 La Module does not exhibit the RNA chaperone activity that is observed in vertebrate homologs. Therefore, we conclude that protist LARP6 may have both distinct RNA ligands and binding mechanisms from the previously characterized LARP6 proteins of animals and vascular plants, thus establishing a distinct third class of the LARP6 protein family.
"Endorsing the Septuagint: Ellen White and Her Later Views of the Apocrypha," Academia Letters (2022): 1-7.
Creators: name: Korpman, Matthew
Publisher: name: Humanities Commons
Year: 2022

description: In this short article, the later views of Ellen White toward the Apocrypha are explored, building on previous studies that have demonstrated her continued utilization of apocryphal works past 1850. It is argued that by examining her views on inspiration and a reference she makes to the Septuagint, a plausible understanding of her views about the inspiration of the Apocrypha can be determined.
Glass palm cup
Creators: name: Hamerow, Helena
Publisher: name: University of Oxford
Year: 2021
Subjects: Archaeology

description: Glass palm cup (Harden Class X,ii,b,20). Height 5.4cm, rim diam. 11.7cm. Glass pale bluish-green, with olive green streaks, many small air bubbles, pronounced blowing spirals. Rim outward folded, hollow in part and irregular i.e. much larger on one side. Pontil mark on base. Glass very well preserved, no trace of decay, and no sign of wear on the rim.
RNase P cleavage of pseudoknot substrates reveals differences in active site architecture that depend on residue N-1 in the 5’ leader
Creators: name: Kosek, David M.
name: Leal, J. Luis
name: Kikovska-Stojanovska, Ema
name: Mao, Guanzhong
name: Wu, Shiying
name: Flores, Samuel C.
name: Kirsebom, Leif A.
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Virology
subject: Computational Biology

description: We show that a small biotin-binding RNA aptamer that folds into a pseudoknot structure acts as a substrate for bacterial RNase P RNA (RPR) with and without the RNase P C5 protein. Cleavage in the single-stranded region in loop 1 was shown to depend on the presence of a RCCA-motif at the 3’ end of the substrate. The nucleobase and the 2’hydroxyl at the position immediately 5’ of the cleavage site contribute to both cleavage efficiency and site selection, where C at this position induces significant cleavage at an alternative site, one base upstream of the main cleavage site. The frequencies of cleavage at these two sites and Mg2+ binding change upon altering the structural topology in the vicinity of the cleavage site as well as by replacing Mg2+ with other divalent metal ions. Modelling studies of RPR in complex with the pseudoknot substrates suggest alternative structural topologies for cleavage at the main and the alternative site and a shift in positioning of Mg2+ that activates the H2O nucleophile. Together, our data are consistent with a model where the organization of the active site structure and positioning of Mg2+ is influenced by the identities of residues at and in the vicinity of the site of cleavage.
Additional file 1 of Facile and eco-friendly fabrication of biocompatible hydrogel containing CuS@Ser NPs with mechanical flexibility and photothermal antibacterial activity to promote infected wound healing
Creators: name: Guo, Ye
name: Xie, Bingqing
name: Jiang, Min
name: Yuan, Lingling
name: Jiang, Xueyu
name: Li, Silei
name: Cai, Rui
name: Chen, Junliang
name: Jiang, Xia
name: He, Yun
name: Tao, Gang
Publisher: name: figshare
Year: 2024
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Figure S1. Photograph of XK, XK/CuS0.5, XK/CuS1, and XK/CuS2 hydrogel after soaking in PBS for 0, 1, 3, 5, and 7 days, respectively. Figure S2. Weight change of XK, XK/CuS0.5, XK/CuS1, and XK/CuS2 hydrogel after soaking in PBS for 0, 1, 3, 5, and 7 days, respectively.
Noncoding function of super enhancer derived Cpox pre-mRNA in modulating neighbouring gene expression and chromatin interactions
Creators: name: Xie, Bingning
name: Dean, Ann
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Mental Health
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Super enhancers are important regulators of gene expression that often overlap with protein-coding genes. However, it is unclear whether the overlapping protein-coding genes and the RNA derived from them contribute to enhancer activity. Using an erythroid-specific super enhancer that overlaps the Cpox gene as a model, Cpox pre-mRNA is found to have a non-coding function in regulating neighbouring protein-coding genes, eRNA expression and TAD interactions. Depletion of Cpox pre-mRNA leads to accumulation of H3K27me3 and release of p300 from the Cpox locus, activating an intra-TAD enhancer and gene expression. Additionally, a head-to-tail interaction between the TAD boundary genes Cpox and Dcbld2 is identified, facilitated by a novel type of repressive loop anchored by p300 and PRC2/H3K27me3. These results uncover a regulatory role for pre-mRNA transcribed within a super enhancer context and provide insight into head-to-tail inter-gene interaction in the regulation of gene expression and oncogene activation.
Great square-headed brooch
Creators: name: Hamerow, Helena
Publisher: name: University of Oxford
Year: 2021
Subjects: Archaeology

description: Bronze gilt square-headed brooch, l. 10.5cm. Broad headplate with small central panel above bow bisected by upside down full face mask with prominent eyes and brow ridges, cheek blobs, nose and beard, and flanking spiral swastika motifs inside raised rect. frame which is enclosed by a frame in lower plane of punched circlets, enclosed in turn by a relief band which takes in part of lower edge of plate but is interrupted by top of bow. Around this a zone of ornament with billeting at sides and at top a pair of Style I animals facing away from each other: they have upcurled tails, single clawed foot, 'helmeted' heads with eye underlined and down-curving 'beaks' or tongues. Around this zone another relief band, and clinging to the upper corners of this and continuing along top and down sides a much obscured outer frame of zoomorphic dec. Bow short with raised median ridge and central button, and lowered panels. Upper corners of footplate have rampant creatures with large helmeted heads, necks, upraised forefeet with arched hip-joint, looped body, then diminutive hind-leg stretched out at right angles to body behind; curled excrescences at back of neck and head. Below bow, a frontal mask enclosed between forefeet of rampant animals, with prominent eyes and nose, cheeks merging into relief frame of undivided lozenge-shaped central panel of foot. This panel merges at sides into profile helmeted heads facing outwards, with rudimentary body and foot below eye, and rect. panel with punched ringlets at outer angles; at foot there is another complex fullface human mask - has well defined hair with curled bob at level of ears; eyebrows, prominent eyes and nose, mouth with upcurled mustachios, and below rect. panel with punched ringlets. At centre of lozenge panel a curly swastika as on headplate, surrounded by a flat border punched with ringlets.cf. Leeds, E.A.S. Gt. Sq. Headed Brooches (1949), type A3. He missed this specimen, which is the best preserved eg. of a type represented elsewhere at Lackford (fragmentary) no. 15A, Haslingfield no. 15, etc. Lackford is closest.This brooch probably the earliest and best of the group. An 'Anglian' type, which Leeds derived from one at Holywell Row no. 11 through Lakenheath, no. 14 (both without outer animals on headplate) through Lackford 15A and on into Cambs. region series with animal heads at upper corners.Probably from one of Cambs. region cemeteries.Either Faussett or Rolfe collection.Gatty Slip indicates object originally from either Faussett or Rolfe collection. – D.H.Group IX after Hines 1997; pers. comm. – B.B.
Additional file 1 of The frequency of colorectal lesions in the first-degree relatives of patients with colorectal lesions among PERSIAN Guilan Cohort Study population (PGCS)
Creators: name: Matin, Somaieh
name: Joukar, Farahnaz
name: Maroufizadeh, Saman
name: Asgharnezhad, Mehrnaz
name: Karimian, Paridokht
name: Mansour-Ghanaei, Fariborz
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Cancer

description: Supplementary Material 1
Noncoding function of super enhancer derived cpox pre-mRNA in modulating neighboring gene expression and chromatin interactions
Creators: name: Xie, Bingning
name: Dean, Ann
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Mental Health
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Super enhancers are important regulators of gene expression that often overlap with protein-coding genes. However, it is unclear whether the overlapping protein-coding genes and the RNA derived from them contribute to enhancer activity. Using an erythroid-specific super enhancer that overlaps the Cpox gene as a model, Cpox pre-mRNA is found to have a non-coding function in regulating neighbouring protein-coding genes, eRNA expression and TAD interactions. Depletion of Cpox pre-mRNA leads to accumulation of H3K27me3 and release of p300 from the Cpox locus, activating an intra-TAD enhancer and gene expression. Additionally, a head-to-tail interaction between the TAD boundary genes Cpox and Dcbld2 is identified, facilitated by a novel type of repressive loop anchored by p300 and PRC2/H3K27me3. These results uncover a regulatory role for pre-mRNA transcribed within a super enhancer context and provide insight into head-to-tail inter-gene interaction in the regulation of gene expression and oncogene activation.
"Is it False Testimony? Studying Luke 16:1-13 as the Rehabilitation of a Rejected Parable," Journal of Greco-Roman Christianity and Judaism 18 (2022): 144-167.
Creators: name: Korpman, Matthew
Publisher: name: Humanities Commons
Year: 2022

description: Our earliest Christian sources suggest that it was common for Christian communities in the first and second century to disregard or ignore statements by Jesus that were perceived to be problematic, even at times claiming they originated with their enemies. This paper turns attention to this early Christian phenomenon of rejecting Jesus’ sayings, exploring what the reasons for doing so were and what the motivations might have been. The Parable of the Dishonest Manager is explored as a test example of a text that appears to have been rejected but uniquely preserved by Luke in his gospel. This paper will argue that Luke has defended the authenticity of the parable by understanding Jesus’ words as rhetorically ironic or sarcastic. In this way, my argument follows the work of Fletcher, Porter, and others who have proposed the same.
White-metal arm ring
Creators: name: Hamerow, Helena
Publisher: name: University of Oxford
Year: 2021
Subjects: Archaeology

description: Silver bracelet, diam. 9.5 - 10.0cm. Unusually massive ring of hexagonal section, presumably cast initially - on one side it has been pared off flat, on both faces, probably in recent times. The terminals taper and are of round section, twisted into a typical 'sliding knot' - which doesn't slide however. 8 twists on one side, ten on the other, separated widely.Said to have been found in Kent with the coin of Leo no. M 7386.
sj-docx-2-anp-10.1177_00048674211009604 – Supplemental material for Suicide crisis calls to emergency services: Cohort profile and findings from a data linkage study in Queensland, Australia
Creators: name: Meurk, Carla
name: Wittenhagen, Lisa
name: Bosley, Emma
name: Steele, Megan L
name: Bunting, Denise
name: Waterson, Elissa
name: Edwards, Bronwen
name: Martain, Ben
name: Heffernan, Ed
Publisher: name: SAGE Journals
Year: 2021
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: FOS: Clinical medicine
subject: Neuroscience

description: Supplemental material, sj-docx-2-anp-10.1177_00048674211009604 for Suicide crisis calls to emergency services: Cohort profile and findings from a data linkage study in Queensland, Australia by Carla Meurk, Lisa Wittenhagen, Emma Bosley, Megan L Steele, Denise Bunting, Elissa Waterson, Bronwen Edwards, Ben Martain and Ed Heffernan in Australian & New Zealand Journal of Psychiatry