cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1 of Is inflammation a missing link between relative handgrip strength with hyperlipidemia? Evidence from a large population-based study
Creators: name: La, Rui
name: Yin, Yunfei
name: Ding, Wenquan
name: He, Zhiyuan
name: Lu, Lingchen
name: Xu, Bin
name: Jiang, Dinghua
name: Huang, Lixin
name: Jiang, Jian
name: Zhou, Liyu
name: Wu, Qian
Publisher: name: figshare
Year: 2024
Subjects: subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Science Policy

description: Supplementary Material 1.
Isocoumarins from the fermentation products of a plant entophytic fungus Penicillium oxalicum
Creators: name: Li, Qing-Qing
name: Zhang, Cheng-Ming
name: Neng-Jun Xiang
name: Du, Gang
name: Dang, Li-Zhi
name: Yi-Peng Zhang
name: Ju-Xing Jiang
name: Yang, Hai-Ying
name: Duan, Yan-Qing
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Biological Sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Chemistry
subject: Earth and Environmental Sciences
subject: Microbiology
subject: Biochemistry

description: Three new isocoumarins, terrecoumarins A–C (1–3), together with six known isocoumarins (4–9) were isolated from the fermentation products of the fungus Penicillium oxalicum 0403. Their structures were elucidated by spectroscopic methods, including extensive 1D and 2D NMR techniques. The anti-tobacco mosaic virus (anti-TMV) activities of 1–9 were evaluated. The results revealed that compound 1 showed high anti-TMV activity with inhibition rate 25.4 ± 3.5%. Other compounds also showed weak activity with inhibition rate in the range of 11.3–18.9%.
ANALYSE DE L'EFFICACITÉ DU FINANCEMENT D'ENTRETIEN ROUTIER EN RÉPUBLIQUE DÉMOCRATIQUE DU CONGO
Creators: name: Baku Nzoau Gertrude
Publisher: name: Zenodo
Year: 2024

description: Ce papier poursuit l’objectif d’évaluer l’efficacité L’objectif poursuivi dans cette étude a été d’évaluer l'efficacité du financement des agences d'exécution d'entretien routier sur la qualité et la durabilité des infrastructures routières en RDC à travers le développement et l’application du modèle DEA dans le sous-secteur routier en vue de : (i) calculer le score d’efficience atteint par chaque agence routière durant la période allant de 2010 à 2015 et dans chaque province de 2015 à 2020 ; (ii) identifier le type de rendement d’échelle associé à chaque organisation ; (iii) trouver les meilleures répartitions des ressources pour les agences enfin ; et (iv) décider du meilleur financement de l’entretien de la route en RDC pour que ce dernier reste praticable en toute saison.

Pour y parvenir, nous nous sommes posée certaines questions ayant fait l’objet de la présente réflexion. Toutefois, nous avons utilisé la méthodologie DEA simple sur la période de 2010 à 2015 et DEA en Panel de malmquist sur la période de 2015 à 2020.  La discussion des résultats ayant démontré l’inefficacité dans le financement de travaux routiers d’entretien, ce qui a d’ailleurs confirmé l’hypothèse formulée au départ. Un diagnostic minutieux du réseau routier dont l’analyse et les investigations constatées répondant à la recherche de l’efficacité du financement de fonds d’entretien routier et les scores d’efficience moyens de moins de 100 %, justifie clairement la dégradation avancée du réseau routier estimée à 75 % pour les agences routières.
Additional file 1 of Radioiodine treatment outcome by dosimetric parameters and renal function in hyperthyroidism
Creators: name: Nilsson, Joachim N.
name: Elovsson, Rebecca
name: Thor, Daniel
name: Calissendorff, Jan
name: Ardenfors, Oscar
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Cancer

description: Additional file 1: Table S1. Comparison of outcome in the present study to articles in the literature that specified frequencies of eu-, hypo- and hyperthyroidism for both Nodular and Graves (nonsystematic review). The table is sorted by amount of activity. Figure S2. Graph of the data from Table 1 for the Graves cases.
Additional file 1 of Factors affecting major depression in Iran: a mixed-method study
Creators: name: Hosseinzadeh-Shanjani, Zarrintaj
name: Khodayari-Zarnaq, Rahim
name: Khosravi, Mohammad Farough
name: Arab-Zozani, Morteza
name: Alizadeh, Gisoo
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Biotechnology
Science Policy
Mental Health

description: Supplementary Material 1
Spin and lattice dynamics of a van der Waals antiferromagnet MnPSe$_3$
Creators: name: Liao, Junbo
name: Huang, Zhentao
name: Shangguan, Yanyan
name: Zhang, Bo
name: Cheng, Shufan
name: Xu, Hao
name: Kajimoto, Ryoichi
name: Kamazawa, Kazuya
name: Bao, Song
name: Wen, Jinsheng
Publisher: name: arXiv
Year: 2024
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Antiferromagnetic van der Waals family $\rm \textit{M}P\textit{X}_{3}\ (M=Fe,\ Mn,\ Co,\text{ and}\ Ni; X=S\text{ and}\ Se)$ have attracted significant research attention due to the possibility of realizing long-range magnetic order down to the monolayer limit. Here, we perform inelastic neutron scattering measurements on single crystal samples of MnPSe$_3$, a member of the $\rm \textit{M}P\textit{X}_{3}$ family, to study the spin dynamics and determine the effective spin model. The excited magnon bands are well characterized by a spin model, which includes a Heisenberg term with three intraplane exchange parameters ($J_{1}=-0.73$~meV, $J_{2}=-0.014$~meV, $J_{3}=-0.43$~meV) and one interplane parameter ($J_{c}=-0.054$~meV), and an easy-plane single-ion anisotropy term ($D=-0.035$~meV). Additionally, we observe the intersection of the magnon and phonon bands but no anomalous spectral features induced by the formation of magnon-phonon hybrid excitations at the intersecting region. We discuss possible reasons for the absence of such hybrid excitations in MnPSe$_3$.
description: 11 pages, 5 figures
Supplementary Online Material
Creators: name: Mattern, Maximilian
name: Jarecki, Jasmin
name: Arregi, Jon Ander
name: Uhlíř, Vojtěch
name: Rössle, Matthias
name: Bargheer, Matias
Publisher: name: AIP Publishing
Year: 2024
Subjects: classificationCode: 51
subject: Physical sciences
subject: FOS: Physical sciences

description: Supplementary without red marks
Additional file 2 of Vascular function of the T3/modern clade WUSCHEL-Related HOMEOBOX transcription factor genes predate apical meristem-maintenance function
Creators: name: Youngstrom, Christopher E.
name: Withers, Kelley A.
name: Irish, Erin E.
name: Cheng, Chi-Lien
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 2.
Recreational trails in the Poprad Landscape Park, Poland: the spatial pattern of trail impacts and use-related, environmental, and managerial factors
Creators: name: Tomczyk, Aleksandra M.
name: Ewertowski, Marek W.
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified

description: Multiple maps at a scale of 1:51,500, portraying the trail-related features of 43.4 km of recreational trails located in a mountainous area of the Poprad Landscape Park (south-central Poland), were produced. More specifically, the maps presented the spatial pattern of trail impacts (i.e. trail width; trail incision; the number of informal trails; old, abandoned trail sections; a presence of muddy sections and water puddles), as well as use-related (type and amount of use), environmental (vegetation type, density of forest floor/grassland and understorey layer along trails, aspect, and trail topographic position), and managerial (trail surface, grade, and alignment) factors. For the most part, the information was collected during field surveys using the Global Positioning System and Geographic Information System (GIS), but in a minority of cases it was calculated within the GIS-environment based on a digital elevation model. Collecting accurate data on condition of trails and elements that influenced their state is crucial for managers in protected natural areas who face the challenges of protecting nature and providing recreational opportunities at the same time.
Additional file 3 of Vascular function of the T3/modern clade WUSCHEL-Related HOMEOBOX transcription factor genes predate apical meristem-maintenance function
Creators: name: Youngstrom, Christopher E.
name: Withers, Kelley A.
name: Irish, Erin E.
name: Cheng, Chi-Lien
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 3.
Additional file 1 of Blocking miR396 activity by overexpression MIM396 improved switchgrass tiller number and biomass yield
Creators: name: Xu, Mingzhi
name: Li, Lin
name: Yan, Jianping
name: Li, Dayong
name: Liu, Yaling
name: Zhang, Wanjun
name: Liu, Yanrong
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Supplementary Material 1.
First-line treatment in the management of advanced renal cell carcinoma: systematic review and network meta-analysis
Creators: name: Larkin, James
name: Paine, Abby
name: Foley, Grace
name: Mitchell, Stephen
name: Chen, Connie
Publisher: name: Taylor & Francis
Year: 2015
Subjects: Science Policy
Cancer
Biological Sciences
Chemistry
Earth and Environmental Sciences
Biotechnology
Pharmacology
Cell Biology

description: Objectives: To conduct a systematic review and network meta-analysis (NMA) to assess effectiveness of first-line treatments for advanced renal cell carcinoma (RCC).Methods: Database searches were conducted to identify randomized controlled trials (RCTs) reporting results for eligible treatments. A fixed-effect Bayesian NMA was conducted to assess the relative effectiveness of treatments, with progression-free survival (PFS) reported as hazard ratios (HRs) and 95% credible intervals (CrIs).Results: Eleven unique RCTs were suitable for inclusion in the NMA. In the base case, in terms of PFS, sunitinib was superior compared with bevacizumab + IFN-α (HR = 0.79, 95% CrI: 0.64 – 0.96), everolimus (HR = 0.70, 95% CrI: 0.56 – 0.87), sorafenib (HR = 0.56, 95% CrI: 0.40 – 0.77) and temsirolimus + bevacizumab (HR = 0.74, 95% CrI: 0.56 – 0.96). Although, the point values for the mean and median HRs were < 1.0, there was no significant difference in PFS between sunitinib and axitinib, pazopanib or tivozanib. Although sensitivity analyses impacted the results of the NMA, no treatment was significantly more efficacious than sunitinib.Conclusion: Results from this analysis suggest that there is no treatment superior to the current benchmark treatment, sunitinib, in the management of advanced RCC in the first-line setting.
Additional file 4 of Vascular function of the T3/modern clade WUSCHEL-Related HOMEOBOX transcription factor genes predate apical meristem-maintenance function
Creators: name: Youngstrom, Christopher E.
name: Withers, Kelley A.
name: Irish, Erin E.
name: Cheng, Chi-Lien
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 4.
Additional file 1 of Simultaneous assessment of blood flow and myelin content in the brain white matter with dynamic [11 C]PiB PET: a test-retest study in healthy controls
Creators: name: Yazdan-Panah, Arya
name: Bodini, Benedetta
name: Soulier, Théodore
name: Veronese, Mattia
name: Bottlaender, Michel
name: Tonietto, Matteo
name: Stankoff, Bruno
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Mental Health

description: Supplementary Material 1
Preeclampsia in twin pregnancies: association with selective intrauterine growth restriction
Creators: name: Dongcai Wu
name: Linhuan Huang
name: Zhiming He
name: Huang, Xuan
name: Fang, Qun
name: Yanmin Luo
Publisher: name: Taylor & Francis
Year: 2016
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Objective: To identify the association between preeclampsia (PE) and selective intrauterine growth restriction (sIUGR) in twin pregnancies. Methods: This was a retrospective cohort study of 1004 twin pregnancies from 2008 to 2014. We specifically compared the incidence, clinical characteristics and outcomes of PE between sIUGR and normal-growth twin pregnancies. Results: PE occurred more frequently in sIUGR pregnancies [29.0% (51/176)] than in normal-growth twin pregnancies [13.1% (99/756), p p = 0.045) and of severe PE (p = 0.025) were higher in sIUGR pregnancies with PE. The systolic blood pressure was also higher in sIUGR pregnancies with PE (152.6 ± 11.8 mmHg) than in normal-growth pregnancies with PE (148.0 ± 8.2 mmHg) (p = 0.042). Additionally, more sIUGR pregnancies were delivered at 32–36 weeks (p = 0.001), and fewer were delivered at ≥36 weeks (p p = 0.020). Conclusions: sIUGR is associated with increased odds of developing severe PE in twin pregnancies, leading to poorer perinatal outcomes.
Preeclampsia in twin pregnancies: association with selective intrauterine growth restriction
Creators: name: Dongcai Wu
name: Linhuan Huang
name: Zhiming He
name: Huang, Xuan
name: Fang, Qun
name: Yanmin Luo
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Objective: To identify the association between preeclampsia (PE) and selective intrauterine growth restriction (sIUGR) in twin pregnancies. Methods: This was a retrospective cohort study of 1004 twin pregnancies from 2008 to 2014. We specifically compared the incidence, clinical characteristics and outcomes of PE between sIUGR and normal-growth twin pregnancies. Results: PE occurred more frequently in sIUGR pregnancies [29.0% (51/176)] than in normal-growth twin pregnancies [13.1% (99/756), p p = 0.045) and of severe PE (p = 0.025) were higher in sIUGR pregnancies with PE. The systolic blood pressure was also higher in sIUGR pregnancies with PE (152.6 ± 11.8 mmHg) than in normal-growth pregnancies with PE (148.0 ± 8.2 mmHg) (p = 0.042). Additionally, more sIUGR pregnancies were delivered at 32–36 weeks (p = 0.001), and fewer were delivered at ≥36 weeks (p p = 0.020). Conclusions: sIUGR is associated with increased odds of developing severe PE in twin pregnancies, leading to poorer perinatal outcomes.
Liposomal hydrogel formulation for transdermal delivery of pirfenidone
Creators: name: Anup Jose
name: Mandapalli, Praveen Kumar
name: Venkata Vamsi Krishna Venuganti
Publisher: name: Taylor & Francis
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Cell Biology
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Context: Pirfenidone (PFD) is an anti-fibrotic and anti-inflammatory agent indicated for the treatment of idiopathic pulmonary fibrosis (IPF). The current oral administration of PFD has several limitations including first pass metabolism and gastrointestinal irritation. Objective: The aim of this study is to investigate the feasibility of transdermal delivery of PFD using liposomal carrier system. Materials and methods: PFD-loaded liposomes were prepared using soy phosphatidylcholine (SPC) and sodium cholate (SC). Encapsulation efficiency (EE) of PFD in liposomes was optimized using different preparation techniques including thin film hydration (TFH) method, direct injection method (DIM) and drug encapsulation using freeze–thaw cycles. In vitro drug release study was performed using dialysis membrane method. The skin permeation studies were performed using excised porcine ear skin model in a Franz diffusion cell apparatus. Results and discussion: The average particle size and zeta-potential of liposomes were 191 ± 4.1 nm and −40.4 ± 4.5 mV, respectively. The liposomes prepared by TFH followed by 10 freeze–thaw cycles showed the greatest EE of 22.7 ± 0.63%. The optimized liposome formulation was incorporated in hydroxypropyl methyl cellulose (HPMC) hydrogel containing different permeation enhancers including oleic acid (OA), isopropyl myristate (IPM) and propylene glycol (PG). PFD-loaded liposomes incorporated in hydrogel containing OA and IPM showed the greatest flux of 10.9 ± 1.04 μg/cm2/h across skin, which was 5-fold greater compared with free PFD. The cumulative amount of PFD permeated was 344 ± 28.8 μg/cm2 with a lag time of 2.3 ± 1.3 h. Conclusion: The hydrogel formulation containing PFD-loaded liposomes can be developed as a potential transdermal delivery system.
Additional file 1 of First identification and isolation of equine herpesvirus type 1 in aborted fetal lung tissues of donkeys
Creators: name: Tong, Panpan
name: Pan, Juanjuan
name: Dang, Yueyi
name: Yang, Enhui
name: Jia, Chenyang
name: Duan, Ruli
name: Tian, Shuyao
name: Palidan, Nuerlan
name: Kuang, Ling
name: Wang, Chuanfeng
name: Lu, Gang
name: Xie, Jinxin
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences

description: Supplementary Material 1
Additional file 1 of Predicting in-hospital length of stay: a two-stage modeling approach to account for highly skewed data
Creators: name: Xu, Zhenhui
name: Zhao, Congwen
name: Scales, Charles D.
name: Henao, Ricardo
name: Goldstein, Benjamin A.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Additional file 1. Table S1: Performance of the original model when classifying length of stay. Table S2: Variables used in the prediction model.
Liposomal hydrogel formulation for transdermal delivery of pirfenidone
Creators: name: Anup Jose
name: Mandapalli, Praveen Kumar
name: Venkata Vamsi Krishna Venuganti
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Cell Biology
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Context: Pirfenidone (PFD) is an anti-fibrotic and anti-inflammatory agent indicated for the treatment of idiopathic pulmonary fibrosis (IPF). The current oral administration of PFD has several limitations including first pass metabolism and gastrointestinal irritation. Objective: The aim of this study is to investigate the feasibility of transdermal delivery of PFD using liposomal carrier system. Materials and methods: PFD-loaded liposomes were prepared using soy phosphatidylcholine (SPC) and sodium cholate (SC). Encapsulation efficiency (EE) of PFD in liposomes was optimized using different preparation techniques including thin film hydration (TFH) method, direct injection method (DIM) and drug encapsulation using freeze–thaw cycles. In vitro drug release study was performed using dialysis membrane method. The skin permeation studies were performed using excised porcine ear skin model in a Franz diffusion cell apparatus. Results and discussion: The average particle size and zeta-potential of liposomes were 191 ± 4.1 nm and −40.4 ± 4.5 mV, respectively. The liposomes prepared by TFH followed by 10 freeze–thaw cycles showed the greatest EE of 22.7 ± 0.63%. The optimized liposome formulation was incorporated in hydroxypropyl methyl cellulose (HPMC) hydrogel containing different permeation enhancers including oleic acid (OA), isopropyl myristate (IPM) and propylene glycol (PG). PFD-loaded liposomes incorporated in hydrogel containing OA and IPM showed the greatest flux of 10.9 ± 1.04 μg/cm2/h across skin, which was 5-fold greater compared with free PFD. The cumulative amount of PFD permeated was 344 ± 28.8 μg/cm2 with a lag time of 2.3 ± 1.3 h. Conclusion: The hydrogel formulation containing PFD-loaded liposomes can be developed as a potential transdermal delivery system.
title: Reflections on EU Legitimacy and Governing
Creators: name: Fossum, John Erik
Publisher: name: European Papers (www.europeanpapers.eu)
Year: 2016
Subjects: subject: legitimacy
subject: polity
subject: throughput
subject: representation
subject: democracy
subject: shape-shifting

description: European Papers - A Journal on Law and Integration, 2016 1(3), 1033-1040
description: I. Introduction. - II. A Missing Piece: Throughput Legitimacy. - III. Issues of Representation.
description: Carol Harlow provides us with a nuanced and sophisticated assessment of the development of the EU's formal lawmaking processes and their legitimacy implications. She places particular emphasis on the important notion of executive legislation. That naturally puts the focus on delegation and principal/agent theory, which is discussed in relation to the EU in general. With regard to legitimacy, Harlow discusses both the input and output dimensions. The article brings in some of the crises-driven changes or mutations that the EU is presently experiencing. In this contribution I focus on some of the core notions in the analytical framework that Harlow constructs, with particular emphasis on legitimacy, representation and democracy.
Additional file 1 of Multifunctional elastin-like polypeptide nanocarriers for efficient miRNA delivery in cancer therapy
Creators: name: Hong, Jisan
name: Sim, Dahye
name: Lee, Byung-Heon
name: Sarangthem, Vijaya
name: Park, Rang-Woon
Publisher: name: figshare
Year: 2024
Subjects: subject: Space Science
subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1.
Additional file 1 of A barcoding pipeline for mosquito surveillance in Nepal, a biodiverse dengue-endemic country
Creators: name: Hartke, Juliane
name: Reuss, Friederike
name: Kramer, Isabelle Marie
name: Magdeburg, Axel
name: Deblauwe, Isra
name: Tuladhar, Reshma
name: Gautam, Ishan
name: Dhimal, Meghnath
name: Müller, Ruth
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Neuroscience
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Material S1. Questionnaire, Figure S1. Phylogeny of GER Samples, Table S1. Comparison of Oxford nanopore sequencing and morphological identification results of the BEL samples.
Additional file 2 of A barcoding pipeline for mosquito surveillance in Nepal, a biodiverse dengue-endemic country
Creators: name: Hartke, Juliane
name: Reuss, Friederike
name: Kramer, Isabelle Marie
name: Magdeburg, Axel
name: Deblauwe, Isra
name: Tuladhar, Reshma
name: Gautam, Ishan
name: Dhimal, Meghnath
name: Müller, Ruth
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Neuroscience
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2: Handbook accompanying the webinar on molecular field techniques of vector identification.
Additional file 1 of Who is your prenatal care provider? An algorithm to identify the predominant prenatal care provider with claims data
Creators: name: Deng, Songyuan
name: Renaud, Samantha
name: Bennett, Kevin J.
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: Supplementary Material 1.
Modern likelihood inference for the maximum/minimum of a bivariate normal vector
Creators: name: V. Mameli
name: A. R. Brazzale
Publisher: name: Taylor & Francis
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer

description: We consider the use of modern likelihood asymptotics in the construction of confidence intervals for the parameter which determines the skewness of the distribution of the maximum/minimum of an exchangeable bivariate normal random vector. Simulation studies were conducted to investigate the accuracy of the proposed methods and to compare them to available alternatives. Accuracy is evaluated in terms of both coverage probability and expected length of the interval. We furthermore illustrate the suitability of our proposals by means of two data sets, consisting of, respectively, measurements taken on the brains of 10 mono-zygotic twins and measurements of mineral content of bones in the dominant and non-dominant arms for 25 elderly women.
Additional file 3 of A barcoding pipeline for mosquito surveillance in Nepal, a biodiverse dengue-endemic country
Creators: name: Hartke, Juliane
name: Reuss, Friederike
name: Kramer, Isabelle Marie
name: Magdeburg, Axel
name: Deblauwe, Isra
name: Tuladhar, Reshma
name: Gautam, Ishan
name: Dhimal, Meghnath
name: Müller, Ruth
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Neuroscience
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3: Installation guideline for programs needed during the webinar.
Additional file 1 of Hyperglycemia enhances brain susceptibility to lipopolysaccharide-induced neuroinflammation via astrocyte reprogramming
Creators: name: Lee, Kyung-Seo
name: Yoon, Sung-Hyun
name: Hwang, Inhwa
name: Ma, Jeong-Hwa
name: Yang, Euimo
name: Kim, Rebekah Hyeyoon
name: Kim, Eosu
name: Yu, Je-Wook
Publisher: name: figshare
Year: 2024
Subjects: subject: Space Science
subject: Cell Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Mental Health

description: Supplementary Material 1
Modern likelihood inference for the maximum/minimum of a bivariate normal vector
Creators: name: V. Mameli
name: A. R. Brazzale
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer

description: We consider the use of modern likelihood asymptotics in the construction of confidence intervals for the parameter which determines the skewness of the distribution of the maximum/minimum of an exchangeable bivariate normal random vector. Simulation studies were conducted to investigate the accuracy of the proposed methods and to compare them to available alternatives. Accuracy is evaluated in terms of both coverage probability and expected length of the interval. We furthermore illustrate the suitability of our proposals by means of two data sets, consisting of, respectively, measurements taken on the brains of 10 mono-zygotic twins and measurements of mineral content of bones in the dominant and non-dominant arms for 25 elderly women.
Additional file 4 of A barcoding pipeline for mosquito surveillance in Nepal, a biodiverse dengue-endemic country
Creators: name: Hartke, Juliane
name: Reuss, Friederike
name: Kramer, Isabelle Marie
name: Magdeburg, Axel
name: Deblauwe, Isra
name: Tuladhar, Reshma
name: Gautam, Ishan
name: Dhimal, Meghnath
name: Müller, Ruth
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Neuroscience
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 4: Teaching material of the webinar.
Additional file 1 of Establishment of disulfidptosis-related LncRNA signature as biomarkers in colon adenocarcinoma
Creators: name: Yao, Hongfei
name: Liu, Peng
name: Yao, Linli
name: Li, Xiao
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer

description: Supplementary Material 1.
Quantile-adaptive variable screening in ultra-high dimensional varying coefficient models
Creators: name: Junying Zhang
name: Riquan Zhang
name: Zhiping Lu
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Science Policy
subject: Mathematics
subject: FOS: Mathematics
subject: Biological Sciences
subject: Sociology
subject: FOS: Sociology
subject: Ecology
subject: FOS: Biological sciences
subject: Earth and Environmental Sciences
subject: Biotechnology
subject: Genetics

description: The varying-coefficient model is an important nonparametric statistical model since it allows appreciable flexibility on the structure of fitted model. For ultra-high dimensional heterogeneous data it is very necessary to examine how the effects of covariates vary with exposure variables at different quantile level of interest. In this paper, we extended the marginal screening methods to examine and select variables by ranking a measure of nonparametric marginal contributions of each covariate given the exposure variable. Spline approximations are employed to model marginal effects and select the set of active variables in quantile-adaptive framework. This ensures the sure screening property in quantile-adaptive varying-coefficient model. Numerical studies demonstrate that the proposed procedure works well for heteroscedastic data.
Additional file 2 of Everybody nose: molecular and clinical characteristics of nasal colonization during active methicillin-resistant Staphylococcus aureus bloodstream infection
Creators: name: Reategui Schwarz, Erika
name: van de Guchte, Adriana
name: Dupper, Amy C.
name: Caban, Ana Berbel
name: Nadkarni, Devika
name: Fox, Lindsey
name: Mills, Alexandra
name: Obla, Ajay
name: Chacko, Kieran I.
name: Oussenko, Irina
name: Samaroo, Flora
name: Polanco, Jose
name: Silvera, Richard
name: Smith, Melissa L.
name: Patel, Gopi
name: Gitman, Melissa
name: Alburquerque, Bremy
name: Chung, Marilyn
name: Sullivan, Mitchell J.
name: van Bakel, Harm
name: Altman, Deena R.
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Science Policy
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 2: Table S2. Comorbidities of patients with MRSA BSI with and without nasal colonization.
Additional file 3 of Everybody nose: molecular and clinical characteristics of nasal colonization during active methicillin-resistant Staphylococcus aureus bloodstream infection
Creators: name: Reategui Schwarz, Erika
name: van de Guchte, Adriana
name: Dupper, Amy C.
name: Caban, Ana Berbel
name: Nadkarni, Devika
name: Fox, Lindsey
name: Mills, Alexandra
name: Obla, Ajay
name: Chacko, Kieran I.
name: Oussenko, Irina
name: Samaroo, Flora
name: Polanco, Jose
name: Silvera, Richard
name: Smith, Melissa L.
name: Patel, Gopi
name: Gitman, Melissa
name: Alburquerque, Bremy
name: Chung, Marilyn
name: Sullivan, Mitchell J.
name: van Bakel, Harm
name: Altman, Deena R.
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Science Policy
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 3: Table S3. Outcomes of patients with MRSA BSI with and without nasal colonization.
Enhancing Estimation for Interest Rate Diffusion Models with Bond Prices
Creators: name: Zou, Tao
name: Chen, Song Xi
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Science Policy
subject: Mathematics
subject: FOS: Mathematics
subject: Biological Sciences
subject: Biotechnology
subject: Pharmacology
subject: Biophysics

description: We consider improving estimating parameters of diffusion processes for interest rates by incorporating information in bond prices. This is designed to improve the estimation of the drift parameters, which are known to be subject to large estimation errors. It is shown that having the bond prices together with the short rates leads to more efficient estimation of all parameters for the interest rate models. It enhances the estimation efficiency of the maximum likelihood estimation based on the interest rate dynamics alone. The combined estimation based on the bond prices and the interest rate dynamics can also provide inference to the risk premium parameter. Simulation experiments were conducted to confirm the theoretical properties of the estimators concerned. We analyze the overnight Fed fund rates together with the U.S. Treasury bond prices.
Additional file 1 of Hypofractionated radiotherapy with simultaneous tumor bed boost (Hi-RISE) in breast cancer patients receiving upfront breast-conserving surgery: study protocol for a phase III randomized controlled trial
Creators: name: Jin, Kairui
name: Luo, Jurui
name: Yu, Xiaoli
name: Guo, Xiaomao
Publisher: name: figshare
Year: 2024
Subjects: subject: Biophysics
subject: Space Science
subject: Physical Sciences not elsewhere classified
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Cancer

description: Supplementary Material 1
Large gene overlaps and tRNA processing in the compact mitochondrial genome of the crustacean Armadillidium vulgare
Creators: name: Doublet, Vincent
name: Ubrig, Elodie
name: Abdelmalek Alioua
name: Bouchon, Didier
name: Marcadé, Isabelle
name: Maréchal-Drouard, Laurence
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Marine Biology
subject: Biological Sciences
subject: Earth and Environmental Sciences
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Genetics
subject: Cell Biology
subject: Microbiology
subject: Biochemistry
subject: Biophysics

description: A faithful expression of the mitochondrial DNA is crucial for cell survival. Animal mitochondrial DNA (mtDNA) presents a highly compact gene organization. The typical 16.5 kbp animal mtDNA encodes 13 proteins, 2 rRNAs and 22 tRNAs. In the backyard pillbug Armadillidium vulgare, the rather small 13.9 kbp mtDNA encodes the same set of proteins and rRNAs as compared to animal kingdom mtDNA, but seems to harbor an incomplete set of tRNA genes. Here, we first confirm the expression of 13 tRNA genes in this mtDNA. Then we show the extensive repair of a truncated tRNA, the expression of tRNA involved in large gene overlaps and of tRNA genes partially or fully integrated within protein-coding genes in either direct or opposite orientation. Under selective pressure, overlaps between genes have been likely favored for strong genome size reduction. Our study underlines the existence of unknown biochemical mechanisms for the complete gene expression of A. vulgare mtDNA, and of co-evolutionary processes to keep overlapping genes functional in a compacted mitochondrial genome.
Additional file 1 of Association between Mycobacterium tuberculosis genotype and diabetes mellitus/hypertension: a molecular study
Creators: name: Guo, Shengqiong
name: Lei, Shiguang
name: Palittapongarnpim, Prasit
name: McNeil, Edward
name: Chaiprasert, Angkana
name: Li, Jinlan
name: Chen, Huijuan
name: Ou, Weizheng
name: Surachat, Komwit
name: Qin, Wan
name: Zhang, Siyu
name: Luo, Rujuan
name: Chongsuvivatwong, Virasakdi
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. Table S1. Univariate analysis of factors for Beijing and non-Beijing genotype of Mycobacterium tuberculosis [Beijing vs non-Beijing, n (%)] *.
Introduction to CoARA presented at the CoARA National Chapters Exchange Forum
Creators: name: Borrell-Damián, Lidia
name: Tóth-Czifra, Erzsébet
name: Coalition for Advancing Research Assessment
Publisher: name: Zenodo
Year: 2024

description: Slides presented at the CoARA National Chapters Exchange Forum 2024. 

A description of the event is available here: https://coara.eu/news/building-a-stronger-network-coara-national-chapters-convene-for-a-first-exchange-forum/
What Teachers Should Know about the Bootstrap: Resampling in the Undergraduate Statistics Curriculum
Creators: name: Hesterberg, Tim C.
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Science Policy
subject: Mathematics
subject: FOS: Mathematics
subject: Information and Computing Sciences
subject: Biological Sciences
subject: Sociology
subject: FOS: Sociology
subject: Earth and Environmental Sciences
subject: Biotechnology
subject: Genetics
subject: FOS: Biological sciences

description: Bootstrapping has enormous potential in statistics education and practice, but there are subtle issues and ways to go wrong. For example, the common combination of nonparametric bootstrapping and bootstrap percentile confidence intervals is less accurate than using t-intervals for small samples, though more accurate for larger samples. My goals in this article are to provide a deeper understanding of bootstrap methods—how they work, when they work or not, and which methods work better—and to highlight pedagogical issues.
Additional file 1 of Applying systems approaches to stakeholder and community engagement and knowledge mobilisation in youth mental health system modelling
Creators: name: Freebairn, Louise
name: Song, Yun Ju Christine
name: Occhipinti, Jo-An
name: Huntley, Samantha
name: Dudgeon, Pat
name: Robotham, Julie
name: Lee, Grace Yeeun
name: Hockey, Samuel
name: Gallop, Geoff
name: Hickie, Ian B.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Appendix S1. Site visit 1 agenda.
Large gene overlaps and tRNA processing in the compact mitochondrial genome of the crustacean Armadillidium vulgare
Creators: name: Doublet, Vincent
name: Ubrig, Elodie
name: Abdelmalek Alioua
name: Bouchon, Didier
name: Marcadé, Isabelle
name: Maréchal-Drouard, Laurence
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: A faithful expression of the mitochondrial DNA is crucial for cell survival. Animal mitochondrial DNA (mtDNA) presents a highly compact gene organization. The typical 16.5 kbp animal mtDNA encodes 13 proteins, 2 rRNAs and 22 tRNAs. In the backyard pillbug Armadillidium vulgare, the rather small 13.9 kbp mtDNA encodes the same set of proteins and rRNAs as compared to animal kingdom mtDNA, but seems to harbor an incomplete set of tRNA genes. Here, we first confirm the expression of 13 tRNA genes in this mtDNA. Then we show the extensive repair of a truncated tRNA, the expression of tRNA involved in large gene overlaps and of tRNA genes partially or fully integrated within protein-coding genes in either direct or opposite orientation. Under selective pressure, overlaps between genes have been likely favored for strong genome size reduction. Our study underlines the existence of unknown biochemical mechanisms for the complete gene expression of A. vulgare mtDNA, and of co-evolutionary processes to keep overlapping genes functional in a compacted mitochondrial genome.
Long-read sequencing solves complex structure of CYP21A2 in a large 21-hydroxylase deficiency cohort_Supplemental Table 1.xlsx
Creators: name: Wang, Ruifang
name: Luo, Xiaomei
name: Qiu, Wenjuan
name: Yu, Yongguo
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 320208
subject: Endocrinology

description: Long-read sequencing solves complex structure of CYP21A2 in a large 21-hydroxylase deficiency cohort_Supplemental Table 1
Additional file 1 of Genome characterisation and comparative analysis of Schaalia dentiphila sp. nov. and its subspecies, S. dentiphila subsp. denticola subsp. nov., from the human oral cavity
Creators: name: Tian, Xuechen
name: Teo, Wee Fei Aaron
name: Yang, Yixin
name: Dong, Linyinxue
name: Wong, Aloysius
name: Chen, Li
name: Ahmed, Halah
name: Choo, Siew Woh
name: Jakubovics, Nicholas S.
name: Tan, Geok Yuan Annie
Publisher: name: figshare
Year: 2024
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics

description: Supplementary Material 1.
Modeling and predicting IBNR reserve: extended chain ladder and heteroscedastic regression analysis
Creators: name: Costa, Leonardo
name: Pizzinga, Adrian
name: Atherino, Rodrigo
Publisher: name: Taylor & Francis
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 111714 Mental Health
subject: FOS: Health sciences

description: This work deals with two methodologies for predicting incurred but not reported (IBNR) actuarial reserves. The first is the traditional chain ladder, which is extended for dealing with the calendar year IBNR reserve. The second is based on heteroscedastic regression models suitable to deal with the tail effect of the runoff triangle – and to forecast calendar year IBNR reserves as well. Theoretical results regarding closed expressions for IBNR predictors and mean squared errors are established – for the case of the second methodology, a Monte Carlo study is designed and implemented for accessing finite sample performances of feasible mean squared error formulae. Finally, the methods are implemented with two real data sets. The main conclusions: (i) considering tail effects does not imply theoretical and/or computational problems; and (ii) both methodologies are interesting to design softwares for IBNR reserve prediction.
Additional file 2 of Applying systems approaches to stakeholder and community engagement and knowledge mobilisation in youth mental health system modelling
Creators: name: Freebairn, Louise
name: Song, Yun Ju Christine
name: Occhipinti, Jo-An
name: Huntley, Samantha
name: Dudgeon, Pat
name: Robotham, Julie
name: Lee, Grace Yeeun
name: Hockey, Samuel
name: Gallop, Geoff
name: Hickie, Ian B.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2: Appendix S2. Site visit 2 agenda.