cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Mechanoregulation of cortical bone after implant insertion from Mechanical regulation of bone formation and resorption around implants in a mouse model of osteopenic bone
Creators: name: Zihui Li
name: Betts, Duncan
name: Kuhn, Gisela
name: Schirmer, Michael
name: Müller, Ralph
name: Ruffoni, Davide
Publisher: name: The Royal Society
Year: 2019
Subjects: subject: Biological Engineering
subject: 110601 Biomechanics
subject: FOS: Health sciences
subject: 90301 Biomaterials
subject: FOS: Medical engineering

description: Figure S1. (a) Changes in cortical thickness (Ct.Th) away from the implantation site in control (CTR) and loaded (CML) mice. # denotes a significant difference (p < 0.05) before and after loading within the same group. * denotes a significant difference (p < 0.05) between groups within the same time point. Data reported as mean value with standard error. (b-e) Frequency distributions of tissue microstrains in formation and resorption regions of cortical bone far from the implant. Data calculated (b) after implant insertion at week-interval (w-i) 1.5 and (c) following 2 weeks of cyclic mechanical loading (w-i 5). Corresponding (re)modeling rules describing the probability of bone formation and bone resorption as a function of the local mechanical stimulation (d) after implant insertion and (e) following 2 weeks of loading. * here denotes a significant difference (p < 0.001) between mean values of strains in formation and resorption surfaces. The full line corresponds to the mean and the shaded area to one standard deviation interval.
Faithful orthogonal representations of graphs from partition logics
Creators: name: Svozil, Karl
Publisher: name: arXiv
Year: 2018
Subjects: subject: Quantum Physics (quant-ph)
subject: Probability (math.PR)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: The graphs induced by partition logics allow a dual probabilistic interpretation: a classical one for which probabilities lie on the convex hull of the dispersion-free weights, and another one, suggested independently from the quantum Born rule, in which probabilities are formed by the (absolute) square of the inner product of state vectors with the faithful orthogonal representations of the respective graph. Two immediate consequences are the demonstration that the logico-empirical structure of observables does not determine the type of probabilities alone, and that complementarity does not imply contextuality.
description: 6 pages, 2 figures
Additional file 15 of Genomic and immunological profiles of small-cell lung cancer between East Asians and Caucasian
Creators: name: Lin, Anqi
name: Zhou, Ningning
name: Zhu, Weiliang
name: Zhang, Jiexia
name: Wei, Ting
name: Guo, Linlang
name: Luo, Peng
name: Zhang, Jian
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Additional file 15: Table S6. Related to Additional file 5: Fig. S5aThe results of the CMap analysis of the Caucasian cohort (TP53/RB1 co-mutations vs No alterations in TP53/RB1).
Disorder effects in cellular automata for two-lane traffic
Creators: name: Knospe, Wolfgang
name: Santen, Ludger
name: Schadschneider, Andreas
name: Schreckenberg, Michael
Publisher: name: arXiv
Year: 1998
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: For single-lane traffic models it is well known that particle disorder leads to platoon formation at low densities. Here we discuss the effect of slow cars in two-lane systems. Surprisingly, even a small number of slow cars can initiate the formation of platoons at low densities. The robustness of this phenomenon is investigated for different variants of the lane-changing rules as well as for different variants on the single-lane dynamics. It is shown that anticipation of drivers reduces the influence of slow cars drastically.
description: RevTeX, 22 eps-figures included, 10 pages
MOESM1 of Comparative iTRAQ-based quantitative proteomic analysis of the Chinese grass shrimp (Palaemonetes sinensis) infected with the isopod parasite Tachaea chinensis
Creators: name: Li, Yingdong
name: Li, Xin
name: Xu, Weibin
name: Han, Zhibin
name: Zhao, Yingying
name: Dong, Jing
name: Wei, Hua
name: Chen, Qijun
Publisher: name: figshare
Year: 2019
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified

description: Additional file 1: Figure S1. Picture of T. chinensis attached to the ventral thoracic region of P. sinensis.
Phronia gagnei Chandler 1992
Creators: name: Bächli, Gerhard
name: Merz, Bernhard
name: Haenni, Jean-Paul
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Mycetophilidae
Phronia
Phronia gagnei

description: Phronia gagnei Chandler, 1992.
 1 ♂, Leuk (VS), Finges, 650 m, 09.08.1997, leg. J.-P. Haenni (MHNN). Neufund.
description: Published as part of Bächli, Gerhard, Merz, Bernhard & Haenni, Jean-Paul, 2014, Dritter Nachtrag zur Checkliste der Diptera der Schweiz, pp. 119-140 in Entomo Helvetica 7 on page 122, DOI: 10.5169/seals-985967, http://zenodo.org/record/8096745
Methods and supplementary Tables from Public questions spur the discovery of new bacterial species associated with lignin bioconversion of industrial waste
Creators: name: Mathews, Stephanie L.
name: Epps, Mary Jane
name: R. Kevin Blackburn
name: Goshe, Michael B.
name: Grunden, Amy M.
name: Dunn, Robert R.
Publisher: name: The Royal Society
Year: 2019
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Ecology

description: A citizen science project found that the greenhouse camel cricket (Diestrammena asynamora) is common in North American homes. Public response was to wonder ‘what good are they anyway?’ and ecology and evolution guided the search for potential benefit. We predicted that camel crickets and similar household species would likely host bacteria with the ability to degrade recalcitrant carbon compounds. Lignocellulose is particularly relevant as it is difficult to degrade yet is an important feedstock for pulp and paper, chemical and biofuel industries. We screened gut bacteria of greenhouse camel crickets and another household insect, the hide beetle (Dermestes maculatus) for the ability to grow on and degrade lignocellulose components as well as the lignocellulose-derived industrial waste product black liquor. From three greenhouse camel crickets and three hide beetles, 14 bacterial strains were identified capable of growth on lignocellulosic components, including lignin. Cedecea lapagei was selected for further study due to growth on most lignocellulose components. The C. lapagei secretome was identified using LC/MS/MS analysis. This work demonstrates a novel source of lignocellulose-degrading bacteria and introduces an effective workflow to identify bacterial enzymes for transforming industrial waste into value-added products. More generally, our research suggests the value of ecologically guided discovery of novel organisms.
Spin connection formulations of real Lorentzian General Relativity
Creators: name: Mitsou, Ermis
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We derive the pure spin connection and constraint-free BF formulations of real four-dimensional Lorentzian vacuum General Relativity. In contrast to the existing complex formulations, an important advantage is that they do not require the reality constraints that complicate quantization. We also consider the corresponding modified gravity theories and point out that, contrary to their self-dual analogues, they are not viable because they necessarily contain ghosts. In particular, this constrains the set of potentially viable unified theories one can build by extending the gauge group to the ones with the action structure of General Relativity. We find, however, that the resulting theories do not admit classical solutions. This issue can be solved by introducing extra dynamical fields which, incidentally, could also provide a way to include a matter sector.
description: 20 pages
Spectral Characteristics of Ultrashort Pulses in Kerr-lens Mode-Locked Lasers
Creators: name: Kalashnikov, V. L.
name: Sorokin, E.
name: Sorokina, I. T.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: A number of factors that influence spectral position of the femtosecond pulse in a Kerr-lens modelocked Cr:LiSGaF laser have been identified: high-order dispersion, gain saturation, reabsorption from the ground state, and stimulated Raman scattering. Using the one-dimensional numerical model for the simulation of the laser cavity, the relative contributions of different factors have been compared. The Raman effect provides the largest self-frequency shift from the gain peak (up to 60 nm), followed by the gain saturation (25 nm), while the high-order dispersion contribution is insignificant (5 nm). Comparison with the experimental data confirm that the stimulated Raman scattering is a main cause of the ultrashort pulse self-frequency shift observed in Cr:LiSGaF and Cr:LiSAF lasers
description: 13 pages, 8 figures, 3 tables, LaTeX2e, spie.sty, psfig.sty
Additional file 6 of ROB-MEN: a tool to assess risk of bias due to missing evidence in network meta-analysis
Creators: name: Chiocchia, Virginia
name: Nikolakopoulou, Adriani
name: Higgins, Julian P. T.
name: Page, Matthew J.
name: Papakonstantinou, Theodoros
name: Cipriani, Andrea
name: Furukawa, Toshi A.
name: Siontis, George C. M.
name: Egger, Matthias
name: Salanti, Georgia
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 6. Contribution matrix for the network of non-invasive diagnostic modalities for coronary artery disease in patients with low risk acute coronary syndrome.
Reversible magnetic switching of high-spin molecules on a giant Rashba surface
Creators: name: Kügel, Jens
name: Karolak, Michael
name: Krönlein, Andreas
name: Serrate, David
name: Bode, Matthias
name: Sangiovanni, Giorgio
Publisher: name: arXiv
Year: 2018
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The quantum mechanical screening of a spin via conduction electrons depends sensitively on the environment seen by the magnetic impurity. A high degree of responsiveness can be obtained with metal complexes, as the embedding of a metal ion into an organic molecule prevents intercalation or alloying and allows for a good control by an appropriate choice of the ligands. There are therefore hopes to reach an "on demand" control of the spin state of single molecules adsorbed on substrates. Hitherto one route was to rely on "switchable" molecules with intrinsic bistabilities triggered by external stimuli, such as temperature or light, or on the controlled dosing of chemicals to form reversible bonds. However, these methods constrain the functionality to switchable molecules or depend on access to atoms or molecules. Here, we present a way to induce bistability also in a planar molecule by making use of the environment. We found that the particular "habitat" offered by an antiphase boundary of the Rashba system BiAg$_2$ stabilizes a second structure for manganese phthalocyanine molecules, in which the central Mn ion moves out of the molecular plane. This corresponds to the formation of a large magnetic moment and a concomitant change of the ground state with respect to the conventional adsorption site. The reversible spin switch found here shows how we can not only rearrange electronic levels or lift orbital degeneracies via the substrate, but even sway the effects of many-body interactions in single molecules by acting on their surrounding.
description: Main text, 7 pages, 6 figures. Supplementary material available at https://www.nature.com/articles/s41535-018-0126-z
Transport mean free path for Magneto-Transverse Light Diffusion: an alternative approach
Creators: name: Lacoste, D.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: This article presents a derivation of the transport mean free path for magneto-transverse light diffusion, $\ell^*_\perp$, in an arbitrary random mixture of Faraday-active and non-Faraday active Mie scatterers. This derivation is based on the standard radiative transfer equation. The expression of the transport mean free path obtained previously from the Bethe-Salpether equation, for the case where only Faraday-active scatterers are present,is recovered. This simpler formulation can include the case of homogeneous mixtures of Faraday-active and non-Faraday active scatterers.
description: 11 pages, no figures, uses Revtex, submitted to Waves in Random Media
Jahn-Teller distortion and electronic correlation effects in undoped manganese perovskites
Creators: name: Benedetti, Patrizia
name: Zeyher, Roland
Publisher: name: arXiv
Year: 1998
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: The formation of a long-range Jahn-Teller distortion in undoped manganites is studied within the dynamical mean-field theory taking both electron-phonon and electron-electron interactions into account. We find that the observed insulating behavior at temperatures above the Jahn-Teller transition and the bond-length changes below it can most naturally by explained by assuming a strong electronic repulsion and a rather weak electron-phonon coupling.
description: 6 pages revtex + 5 figures included
Sirtuin 2 regulates cellular iron homeostasis via deacetylation of transcription factor NRF2
Creators: name: Xiaoyan Yang
name: Park, Seong-Hoon
name: Hsiang-Chun Chang
name: Shapiro, Jason
name: Vassilopoulos, Athanassios
name: Sawicki, Konrad T.
name: Chunlei Chen
name: Shang, Meng
name: Burridge, Paul W.
name: Epting, Conrad L.
name: Wilsbacher, Lisa D.
name: Supak Jenkitkasemwong
name: Knutson, Mitchell D.
name: Gius, David
name: Ardehali, Hossein
Publisher: name: Health Research Alliance
Year: 2019
Subjects: subject: 60602 Animal Physiology - Cell
subject: FOS: Biological sciences

description: SIRT2 is a cytoplasmic sirtuin that plays a role in various cellular processes, including tumorigenesis, metabolism, and inflammation. Since these processes require iron, we hypothesized that SIRT2 directly regulates cellular iron homeostasis. Here, we have demonstrated that SIRT2 depletion results in a decrease in cellular iron levels both in vitro and in vivo. Mechanistically, we determined that SIRT2 maintains cellular iron levels by binding to and deacetylating nuclear factor erythroid-derived 2–related factor 2 (NRF2) on lysines 506 and 508, leading to a reduction in total and nuclear NRF2 levels. The reduction in nuclear NRF2 leads to reduced ferroportin 1 (FPN1) expression, which in turn results in decreased cellular iron export. Finally, we observed that Sirt2 deletion reduced cell viability in response to iron deficiency. Moreover, livers from Sirt2–/– mice had decreased iron levels, while this effect was reversed in Sirt2–/– Nrf2–/– double-KO mice. Taken together, our results uncover a link between sirtuin proteins and direct control over cellular iron homeostasis via regulation of NRF2 deacetylation and stability
Modelling a Transition-Edge Sensor X-ray Microcalorimeter Linear Array for Compton Profile Measurements and Energy Dispersive Diffraction
Creators: name: Yan, Daikang
name: Gades, Lisa M.
name: Guruswamy, Tejas
name: Patel, Umeshkumar M.
name: Quaranta, Orlando
name: Miceli, Antonino
Publisher: name: arXiv
Year: 2019
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: FOS: Physical sciences

description: Transition-edge sensors are a type of superconducting detector that offers high energy resolution based on their sharp resistance-temperature feature in the superconducting-to-normal transition. TES X-ray microcalorimeters have typically been designed and used for spectroscopic applications. In this work, we present a design optimization for a TES X-ray microcalorimeter array for high-energy scattering and diffraction measurements. In particular, Compton scattering provides information about the electron momentum distribution, while energy dispersive diffraction provides structural information about dense engineering materials. Compton scattering and energy dispersive diffraction experiments must be conducted in the very hard X-ray regime (~ 100 keV), demanding a high X-ray stopping power in the detector; therefore, an absorber with a large heat capacity is needed in conjunction with the TES. In addition, both applications would benefit from an array composed of parallel strips. We present a design for a TES X-ray microcalorimeter optimized for such applications. In particular, we model the longitudinal position dependence due to the finite thermal diffusion time in the absorber.
description: Applied Superconductivity Conference (ASC) 2018, accepted to special issue of the IEEE Transactions on Applied Superconductivity (TAS)
Quadratic forms connected with Fourier coefficients of holomorphic and Maass cusp forms
Creators: name: Zaghloul, Giamila
Publisher: name: arXiv
Year: 2018
Subjects: subject: Number Theory (math.NT)
subject: FOS: Mathematics
subject: 11F30

description: In this work we prove a prime number type theorem involving the normalised Fourier coefficients of holomorphic and Maass cusp forms, using the classical circle method. A key point is in a recent paper of Fouvry and Ganguly, based on Hoffstein-Ramakrishnan's result about the non-existence of the Siegel zeros for $GL(2)$ $L$-functions, which allows us to improve preceding estimates.
description: 10 pages
BioMates - Bio-oil, validating AFP
Creators: name: Narvesjö, Jimmy
Publisher: name: Zenodo
Year: 2022
Subjects: Ablative fast pyrolysis
Coprocessing
Bio-Oil
Straw
Miscanthus

description: Ablative fast pyrolysis (AFP) is the first step in the BioMates-concept for producing bio-based intermediates (BioMates) with reliable properties from stalk-type biomass. These intermediates are designed for co-processing within conventional refineries. The H2020-project BioMates validates the process concept (www.biomates.eu). AFP produces bio-oil to be mildly hydrotreated towards said intermediates afterwards. This document describes the validation of bio-oil production in an ablative fast pyrolysis (AFP) pilot plant (TRL5) at RISE, producing bio-oil fractions for further use in the hydrotreatment to produce BioMates. During the period reported here, bio-oil fractions from both straw and Miscanthus, in total about 1045 kg of bio-oil, separated in two to three oil fractions, have been produced.
Sciophilinae
Creators: name: Bächli, Gerhard
name: Merz, Bernhard
name: Haenni, Jean-Paul
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Mycetophilidae

description: Sciophilinae
 Greenomyia mongolica Laštovka & Matile, 1974. (Chandler 2008).
description: Published as part of Bächli, Gerhard, Merz, Bernhard & Haenni, Jean-Paul, 2014, Dritter Nachtrag zur Checkliste der Diptera der Schweiz, pp. 119-140 in Entomo Helvetica 7 on page 122, DOI: 10.5169/seals-985967, http://zenodo.org/record/8096745
Opioid dispensing among adult Medicaid enrollees by diabetes status
Creators: name: Ng, Boon Peng
name: Rabold, Elizabeth M.
name: Guy, Gery P.
name: Park, Chanhyun
name: Zhang, Ping
name: Smith, Bryce D.
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Diabetes disproportionately affects low-income individuals, many of whom are covered by Medicaid. Comorbidities and complications of diabetes can lead to chronic pain; however, little is known about opioid use patterns among Medicaid enrollees with diabetes. This study examined opioid dispensing among Medicaid enrollees by diabetes status. Medicaid claims data from 2014 were used to examine opioid dispensing by diabetes status among 622,992 adult enrollees aged 19–64 years. A logistic model adjusting for demographics and comorbidities was used to examine the association between diabetes and opioid dispensing among enrollees. Analyses were completed in 2019. Overall, 61.6% of enrollees with diabetes filled at least one opioid prescription compared to 31.8% of enrollees without diabetes. A higher proportion of enrollees with diabetes had long-term opioid prescriptions (>90 days’ supply) (with diabetes: 51.0% vs. without: 32.1%, p < .001). Characteristics of individual prescriptions, including daily morphine milligram equivalents (45.9 vs. 49.4), formulation (percent short-acting: 91.5% vs. 90.7%), and type of opioids (i.e. percent hydrocodone: 46.7 vs. 45.3), were similar for those with and without diabetes. After adjustment, enrollees with diabetes were 1.43 times more likely to receive an opioid prescription compared to those without (95% CI, 1.40–1.46). Medicaid enrollees with diabetes were prescribed opioids more frequently and were more likely to have longer opioid supply than enrollees without diabetes. For practitioners who care for patients with diabetes, aligning pain management approaches with evidence-based resources, like the CDC Guideline for Prescribing Opioids for Chronic Pain, can encourage safer opioid prescribing practices.
Effective Field Theory for Dilute Fermi Systems
Creators: name: Hammer, H. -W.
name: Furnstahl, R. J.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Nuclear Theory (nucl-th)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The virtues of an effective field theory (EFT) approach to many-body problems are illustrated by deriving the expansion for the energy of an homogeneous, interacting Fermi gas at low density and zero temperature. A renormalization scheme based on dimensional regularization with minimal subtraction leads to a more transparent power-counting procedure and diagrammatic expansion than conventional many-body approaches. Coefficients of terms in the expansion with logarithms of the Fermi momentum are determined by the renormalization properties of the EFT that describes few-body scattering. Lessons for an EFT treatment of nuclear matter are discussed.
description: 19 pages, RevTeX, 4 ps figures, included using epsf.tex, references added, discussion clarified, typo in eq. (5) corrected
Leptosciarella defecta
Creators: name: Bächli, Gerhard
name: Merz, Bernhard
name: Haenni, Jean-Paul
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Sciaridae
Leptosciarella
Leptosciarella defecta

description: Leptosciarella defecta (Strobl, 1926). (Heller & Weber 2013). (Genaue Daten unter: http://species-id.net/w/index.php?title= Leptosciarella _defecta&oldid=29957)
description: Published as part of Bächli, Gerhard, Merz, Bernhard & Haenni, Jean-Paul, 2014, Dritter Nachtrag zur Checkliste der Diptera der Schweiz, pp. 119-140 in Entomo Helvetica 7 on page 122, DOI: 10.5169/seals-985967, http://zenodo.org/record/8096745
A note on the zeros of generalized Hurwitz zeta functions
Creators: name: Zaghloul, Giamila
Publisher: name: arXiv
Year: 2018
Subjects: subject: Number Theory (math.NT)
subject: FOS: Mathematics
subject: 11M35

description: Given a function $f(n)$ periodic of period $q\geq 1$ and an irrational number $01$ when $α$ is transcendental and $F(s,f,α)$ has a pole at $s=1$, or when $α$ is algebraic irrational and $c=\frac{\max{f(n)}}{\min{f(n)}}<1.15$. In this note, we prove that the result holds in full generality.
description: 6 pages
Bose-Einstein condensation in inhomogeneous Josephson arrays
Creators: name: Burioni, R.
name: Cassi, D.
name: Meccoli, I.
name: Rasetti, M.
name: Sodano, S. Regina. P.
name: Vezzani, A.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: We show that spatial Bose-Einstein condensation of non-interacting bosons occurs in dimension d < 2 over discrete structures with inhomogeneous topology and with no need of external confining potentials. Josephson junction arrays provide a physical realization of this mechanism. The topological origin of the phenomenon may open the way to the engineering of quantum devices based on Bose-Einstein condensation. The comb array, which embodies all the relevant features of this effect, is studied in detail.
description: 4 pages, 5 figures
Dynamical effects on superconductivity in BCS-BEC crossover
Creators: name: Park, Tae-Ho
name: Choi, Han-Yong
Publisher: name: arXiv
Year: 2018
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We investigate the dynamical effects of pairing interaction on superconductivity in BCS-BEC crossover by studying the Holstein model at half-filling where the electron-phonon coupling $g$ controls the crossover. The dynamical mean-field theory was employed in combination with the numerical renormalization group technique. The dynamical effects induce distinct features such as absenceof the dispersion back-bending of Bogoliubov quasi-particles, non-monotonous coupling dependence of the pairing gap, and the soft phonon spectrum due to the Goldstone mode of local pair phase fluctuations. Also interesting is the maximum critical temperature being at the normal state phase boundary. Some of these features have intriguing similarities with the recent observations in the FeSe$_{1-x}$S$_x$ and Fe$_{1+y}$Se$_x$Te$_{1-x}$ iron-chalcogenides in the BCS-BEC crossover.
description: 6 pages + supplemental materials, 4 figures
title: Exploring pulmonary hypertension through microRNA-155 manipulation: signalling pathways, remodelling and haemodynamics
Creators: name: McGlinchey, Neil
Publisher: name: University of Glasgow
Year: 2019
Subjects: subject: pulmonary hypertension, microRNA-155.

description: Background and Aims: Improving survival in pulmonary arterial hypertension depends on developing novel therapies which target pulmonary vascular remodelling. MicroRNAs (miRNAs) are post-transcriptional modulators of gene expression, many of which have been shown to influence signalling pathways and cell processes which control pulmonary vascular remodelling. However, miRNAs have complex and often contradictory actions on these mechanisms, and better understanding of these complexities is needed. MicroRNA-155 has been linked to factors which drive pulmonary hypertension (PH) including TGF-/BMP signalling, inflammation, vasoactive mediators and cellular response to hypoxia. Through manipulation of miR-155 levels, this thesis aims to establish if the pathobiology of PH can be better understood by examining links to some of these factors or others such as p38 MAPK signalling, and to evaluate the in vitro and in vivo effects of downregulating miR-155, with regards to pulmonary vascular remodelling. Methods and results: Downregulation of miR-155 either via a knockout (KO) mouse model, or pharmacological antagonism in vitro, was studied in the hypoxic model of PH. In vitro, downregulation of miR-155 prevented the proliferative and migratory response of pulmonary artery fibroblasts (PAFs) to hypoxia. This was seen both in PAFs from the KO mice, and in rat PAFs treated with antimiR-155. Reduced hypoxic phosphorylation of p38 MAPK was also seen in both models. Hypoxic activation of Smad5, a member of the TGF-/BMP family, was greater in KO mouse PAFs than in wild type (WT) controls. In vivo, hypoxic KO mice had a lower right ventricular systolic pressure than WT controls. Right ventricular hypertrophy did not develop in the KO mice exposed to hypoxia, and hypoxia-driven vascular remodelling was prevented in the KO mice. Conclusions: Downregulation of miR-155 conveys a protective effect against PH. Remodelling mechanisms are attenuated in vitro, and this translates to an in vivo effect. p38 MAPK has been shown by others to control the hypoxic proliferation of PAFs, so the reduced hypoxic phosphorylation of p38 MAPK in this study may partly explain these results. Manipulation of miR-155 in PH should be studied further to fully elucidate the mechanisms behind these findings.
Quasi-particle spectrum around a single vortex in s-wave superconductors
Creators: name: Kato, Masaru
name: Maki, Kazumi
Publisher: name: arXiv
Year: 1998
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: Making use of the Bogoliubov-de Gennes equation, we study the quasi-particle spectrum and the vortex core structure of a single vortex in quasi 2D s-wave superconductors for small $p_Fξ_0$, where $p_F$ is the Fermi momentum and $ξ_0=v_F/Δ_0$ is the coherence length($\hbar=1$). In particular we find that the number of bound states decreases rapidly for decreasing $p_Fξ_0$. Also for $p_Fξ_0\sim 1$, the Kramer-Pesch effect stops around $T/T_c\simeq 0.3$.
description: 9pages, 23figures
Hybrid magneto-dynamical modes in a single magnetostrictive nanomagnet on a piezoelectric substrate arising from magneto-elastic modulation of precessional dynamics
Creators: name: Mondal, Sucheta
name: Abeed, Md Ahsanul
name: Dutta, Koustuv
name: De, Anulekha
name: Sahoo, Sourav
name: Barman, Anjan
name: Bandyopadhyay, Supriyo
Publisher: name: arXiv
Year: 2018
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Magneto-elastic (or "straintronic") switching has emerged as an extremely energy-efficient mechanism for switching the magnetization of magnetostrictive nanomagnets in magnetic memory, logic and non-Boolean circuits. Here, we investigate the ultrafast magneto-dynamics associated with straintronic switching in a single quasi-elliptical magnetostrictive Co nanomagnet deposited on a piezoelectric PMN-PT substrate using time-resolved magneto-optical Kerr effect (TR-MOKE) measurements. The pulsed laser pump beam in the TR-MOKE plays a dual role: it causes precession of the nanomagnet's magnetization about an applied bias magnetic field and it also generates surface acoustic waves (SAWs) in the piezoelectric substrate that produce periodic strains in the magnetostrictive nanomagnet and modulate the precessional dynamics. This modulation gives rise to intriguing hybrid magneto-dynamical modes in the nanomagnet, with rich spin wave texture. The characteristic frequencies of these modes are 5-15 GHz, indicating that strain can affect magnetization in a magnetostrictive nanomagnet in time scales much smaller than 1 ns (~100 ps). This can enable ~10 GHz-range magneto-elastic nano-oscillators that are actuated by strain instead of a spin-polarized current, as well as ultrafast magneto-electric generation of spin waves for magnonic logic circuits, holograms, etc.
description: To appear in ACS Applied Materials and Interfaces
Additional file 7 of ROB-MEN: a tool to assess risk of bias due to missing evidence in network meta-analysis
Creators: name: Chiocchia, Virginia
name: Nikolakopoulou, Adriani
name: Higgins, Julian P. T.
name: Page, Matthew J.
name: Papakonstantinou, Theodoros
name: Cipriani, Andrea
name: Furukawa, Toshi A.
name: Siontis, George C. M.
name: Egger, Matthias
name: Salanti, Georgia
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 7. Pairwise Comparisons Table for the network of 18 antidepressants.
Yajnavalkya and the Origins of Puranic Cosmology
Creators: name: Kak, Subhash
Publisher: name: arXiv
Year: 2001
Subjects: subject: History and Philosophy of Physics (physics.hist-ph)
subject: Popular Physics (physics.pop-ph)
subject: FOS: Physical sciences

description: This paper shows that characteristic features of Puranic cosmology, such as alternating cosmic continents and oceans of successively doubling areas, can be traced to Vedic texts. The Rigveda speaks of seven regions of the universe, and Yajnavalkya, in Brihadaranyaka Upanishad, presents a cosmology that has all the essential features of the Puranic system. This discovery solves the old puzzle of the origin of Puranic astronomy.
description: 9 pages
Obolodiplosis robiniae
Creators: name: Bächli, Gerhard
name: Merz, Bernhard
name: Haenni, Jean-Paul
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Cecidomyiidae
Obolodiplosis
Obolodiplosis robiniae

description: Obolodiplosis robiniae (Haldeman, 1847). (Wermelinger & Skuhravá 2007).
description: Published as part of Bächli, Gerhard, Merz, Bernhard & Haenni, Jean-Paul, 2014, Dritter Nachtrag zur Checkliste der Diptera der Schweiz, pp. 119-140 in Entomo Helvetica 7 on page 122, DOI: 10.5169/seals-985967, http://zenodo.org/record/8096745
Photonic Hall Effect in ferrofluids: Theory and Experiments
Creators: name: Lacoste, D.
name: Donatini, F.
name: Neveu, S.
name: Serughetti, J. A.
name: Van Tiggelen, B. A.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: An experimental and theoretical study on the Photonic Hall Effect (PHE) in liquid and gelled samples of ferrofluids is presented. The ferrofluids are aqueous colloidal suspensions of Fe(_{2})CoO(_{4}) particles, which can be considered as anisotropic and absorbing Rayleigh scatterers. The PHE is found to be produced by the orientation of the magnetic moments of the particles, as is also the case for the Faraday effect. The dependence of the PHE with respect to the concentration of the scatterers, the magnetic field and the polarization of the incident light is measured in liquid and in gelled samples and is compared to a simple model based on the use of a scattering matrix and the single scattering approximation.
description: 20 pages, 11 figures, submitted
A localization method in Hamiltonian graph theory
Creators: name: Asratian, Armen S.
name: Granholm, Jonas B.
name: Khachatryan, Nikolay K.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: 05C45

description: The classical global criteria for the existence of Hamilton cycles only apply to graphs with large edge density and small diameter. In a series of papers Asratian and Khachatryan developed local criteria for the existence of Hamilton cycles in finite connected graphs, which are analogues of the classical global criteria due to Dirac (1952), Ore (1960), Jung (1978), and Nash-Williams (1971). The idea was to show that the global concept of Hamiltonicity can, under rather general conditions, be captured by local phenomena, using the structure of balls of small radii. (The ball of radius $r$ centered at a vertex $u$ is a subgraph of $G$ induced by the set of vertices whose distances from $u$ do not exceed $r$.) Such results are called localization theorems and present a possibility to extend known classes of finite Hamiltonian graphs. In this paper we formulate a general approach for finding localization theorems and use this approach to formulate local analogues of well-known results of Bauer et al. (1989), Bondy (1980), Häggkvist and Nicoghossian (1981), and Moon and Moser (1963). Finally we extend two of our results to infinite locally finite graphs and show that they guarantee the existence of Hamiltonian curves, introduced by Kündgen, Li and Thomassen (2017).
description: 25 pages, 3 figures
Paleolimnological assessment of long-term changes in a boreal recreational lake of the Fermont mining region (subarctic Quebec, Canada)
Creators: name: Jacques, Olivier
name: Pienitz, Reinhard
name: Ghassen Ibrahim
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Cell Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry

description: Jacques O, Pienitz R, Ibrahim G. 2020. Paleolimnological assessment of long-term changes in a boreal recreational lake of the Fermont mining region (subarctic Quebec, Canada). Lake Reserv Manage. 36:314–334. Lac Carheil is a boreal recreational lake located near Fermont, a remote town of subarctic Quebec built in the 1970s to support iron ore mining activities. Harmful cyanobacterial blooms were recently observed at its surface, suggesting that it suffered from eutrophication. However, long-term water quality data were lacking to properly understand its current condition. We therefore undertook a paleolimnological study to investigate past limnological changes in the lake based on the multiproxy analysis of sediment cores. The cores retrieved from Lac Carheil were marked by numerous distinct laminae representing past episodes of high-energy events in the lake catchment. Furthermore, diatom assemblages of the sediments revealed that the limnological conditions of the lake had been relatively stable for more than a thousand years before beginning to change around 1840 AD. This was mainly evidenced by the emergence of species indicative of nutrient enrichment (e.g., Aulacoseira subarctica, Fragilaria crotonensis), which suggested an early eutrophication potentially attributable to climate change. The period of modern settlement (1971–2015) was characterized by a decrease in the carbon to nitrogen ratio (C/N) of the sediments, and marked increases in their organic matter content, diatom total abundance, and diatom-inferred total phosphorus concentrations, which indicated an enhanced primary production. Nevertheless, our results suggested that the disturbance level of the lake was weak and that its prospect for recovery is good. Our study provides valuable reference data to assist the management of Lac Carheil, and reveals first insights into the sedimentological and limnological history of the Fermont mining region.
Additional file 4: of Prognostic value of biomarkers EpCAM and ÎąB-crystallin associated with lymphatic metastasis in breast cancer by iTRAQ analysis
Creators: name: Zeng, Liang
name: Deng, Xiyun
name: Zhong, Jingmin
name: Yuan, Li
name: Tao, Xiaojun
name: Zhang, Sai
name: Zeng, Yong
name: He, Guangchun
name: Tan, Pingping
name: Tao, Yongguang
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Hematology
subject: Plant Biology

description: Table S2. Partial up-regulated proteins in metastatic lymph node compared with primary tumor in breast cancer. Table S3. Partial down-regulated proteins in metastatic lymph node compared with primary tumor in breast cancer. Table S4. UniProt analysis of the biological processes, cellular locations, and molecular functions of the four metastasis-associated proteins. (DOCX 29 kb)
One- and two-particle microrheology
Creators: name: Levine, Alex J.
name: Lubensky, T. C.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We study the dynamics of rigid spheres embedded in viscoelastic media and address two questions of importance to microrheology. First we calculate the complete response to an external force of a single bead in a homogeneous elastic network viscously coupled to an incompressible fluid. From this response function we find the frequency range where the standard assumptions of microrheology are valid. Second we study fluctuations when embedded spheres perturb the media around them and show that mutual fluctuations of two separated spheres provide a more accurate determination of the complex shear modulus than do the fluctuations of a single sphere.
description: 4 pages, 1 figure
Threats and Opportunities to deploying AI in the Research Ecosystem
Creators: name: Wastl, Jürgen
Year: 2024
Subjects: Artificial Intelligence
Artificial intelligence
ÖFOS 2012 -- NATURWISSENSCHAFTEN (1) -- Informatik (102) -- Informatik (1020) -- Artificial Intelligence (102001)
ÖFOS 2012 -- NATURAL SCIENCES (1) -- Computer Sciences (102) -- Computer Sciences (1020) -- Artificial intelligence (102001)
Bibliometrics
Scientometrics
research workflow
ub:talks

description: AI is the most recent in a collection of technological innovations that have
gradually been changing underlying relationships between researchers
and their research. AI will change the space yet further and faster than
previous technological innovations have done.
This talk will propose tools and techniques as well as tackle current
questions, such as:
• How can I support faculty using AI to deliver
trustworthy, impactful research outcomes?
• How can we build confidence in AI?
• How can I embed AI in research workflows?
title: Deficit or difference: African American children's linguistic paths towards a Theory of Mind
Creators: name: Allen, Brenda A.
name: De Villiers, Jill G.
name: François, Samantha
Publisher: name: University of Massachusetts Amherst
Year: 2001

description: Allen, B.A., de Villiers, J.G. & François, S. (2001). Deficit or difference: African American children's linguistic paths towards a Theory of Mind. In symposium, Language acquisition, point of view and possible worlds. In M. Almgren, A. Barrena, M-J. Ezeizabarrena, I. Idiazabal, & B. MacWhinney (Eds.), Research on child language acquisition: Proceedings of the 8th International Congress of Child Languag e, San Sebastian, 1999 (pp. 1006-1014). Somerville, MA: Cascadilla Press.
description: The present paper raises one of many major problems with past research. More specifically, the question is raised with regard to how the presumption of language deficits has been studied, especially the use of language deemed necessary for the development of a theory of mind. The data used to argue that there are deficits in the quality of language encountered in working-class African American households, namely the reduced frequency of references to the mind and mental states, results from language transcripts where simple counts of mental verb usage are recorded for different race/class groups. While such a coding scheme lends a gross measure of mental verb usage, it tells us nothing about the syntactic structures in which such verbs were used. Yet recent theories argue that it is not just the amount of mental verb usage that is the necessary precursor to the development of a theory of mind. Rather, it is maintained that it is the mastery of complement sentences with mental verbs that enable the ultimate development of a theory of mind (Astington and Jenkins, 1995; de Villiers and Pyers, 1997; de Villiers and de Villiers, 2000). The theory of complement sentences also includes communication verbs as a possible linguistic route to a theory of mind because such verbs allow for the same syntactic structures as mental verbs (Astington and Jenkins, 1997; de Villiers and Pyers, 1997; de Villiers and de Villiers, 2000).
A multibasin comparison of historical water quality trends in Lake Manitou, Ontario, a provincially significant lake trout lake
Creators: name: C. Nelligan
name: A. Jeziorski
name: K. M. Rühland
name: A. M. Paterson
name: C. Meyer-Jacob
name: J. P. Smol
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Nelligan C, Jeziorski A, Rühland KM, Paterson AM, Meyer-Jacob C, Smol JP. 2019. A multibasin comparison of historical water quality trends in Lake Manitou, Ontario, a provincially significant lake trout lake. Lake Reserv Manage. 36:243–259. Lake Manitou, on Manitoulin Island (Ontario, Canada), is a two-basin lake that supports a natural lake trout population and currently experiences late-summer hypolimnetic oxygen concentrations below the provincial criterion set to support this sensitive coldwater fish species. However, limited direct monitoring data make it difficult to assess long-term changes in hypolimnetic oxygen concentrations, and to identify what stressors may be responsible for those changes. Dated sediment cores from each basin of Lake Manitou were used to reconstruct end-of-summer volume-weighted hypolimnetic oxygen (VWHO) over the past ∼150 years using assemblages of sedimentary chironomid remains. To assess the influence of nutrients, regional warming, and lake browning, VWHO reconstructions were compared with sedimentary diatom assemblage changes, and spectrally derived trends in both sedimentary chlorophyll a (and its main diagenetic products) and sediment-inferred lakewater total organic carbon. The chironomid-inferred VWHO reconstructions suggest that deepwater oxygen concentrations are currently lower in both basins of Lake Manitou than they were prior to the 20th century (decreasing in the late 1880s coincident with the development of Manitoulin Island by European settlers). In both basins, post-1950 diatom assemblage shifts and whole-lake primary production (sedimentary chlorophyll a) trends suggest that increased nutrient inputs and warming-related changes (i.e., enhanced thermal stability) may be contributing to the current low-oxygen conditions of Lake Manitou. In the west basin, all paleolimnological proxies underwent more pronounced (and often earlier) changes than in the east basin, an observation that suggests more targeted management strategies may be needed to protect Lake Manitou’s coldwater fish population.
The Elusive Monopole
Creators: name: Sidharth, B. G.
Publisher: name: arXiv
Year: 2001
Subjects: subject: General Physics (physics.gen-ph)
subject: FOS: Physical sciences

description: In this brief note, we argue that the elusive magnetic monopole arises due to the strong magnetic effects arising from the non commutative space time structure at small scales. This would also explain why the monopole has eluded detection even after seventy years.
description: 4 pages, TeX
Anapausis dalmatina Duda 1928
Creators: name: Bächli, Gerhard
name: Merz, Bernhard
name: Haenni, Jean-Paul
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Scatopsidae
Anapausis
Anapausis dalmatina

description: Anapausis dalmatina Duda, 1928. (Haenni & Merz 2012).
description: Published as part of Bächli, Gerhard, Merz, Bernhard & Haenni, Jean-Paul, 2014, Dritter Nachtrag zur Checkliste der Diptera der Schweiz, pp. 119-140 in Entomo Helvetica 7 on page 123, DOI: 10.5169/seals-985967, http://zenodo.org/record/8096745
On schurian fusions of the association scheme of a Galois affine plane of prime order
Creators: name: Asadian, Bahareh
name: Ponomarenko, Ilia
Publisher: name: arXiv
Year: 2019
Subjects: subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: 05E30

description: The schurian fusions of the association scheme of a Galois affine plane of prime order are completely identified.
description: 9 pages