cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Biomarkers in Neuroendocrine Tumors
Creators: name: Duque, Marvin
name: Modlin, Irvin M
name: Gupta, Anumeha
name: Saif, Muhammad Wasif
Publisher: name: JOP. Journal of the Pancreas
Year: 2013
Subjects: Biological Markers; Chromogranin A; Eukaryotic Initiation Factor-4E; Genetic Markers; Molecular Targeted Therapy; Neuroendocrine Tumors; Receptor, IGF Type 1; TOR Serine-Threonine Kinases; Vascular Endothelial Growth Factor Receptor-2

description: Neuroendocrine tumors are a heterogeneous group of tumors with cells of neuroendocrine differentiation that arise from diverse anatomic sites with varying morphologic and clinical features. Since the natural history and prognosis varies widely between individual neuroendocrine tumor types, there is a critical need to identify accurate prognostic and predictive biomarkers and markers predictive of therapeutic efficacy. To date, plasma chromogranin-A levels have generally been accepted as the most useful biomarker, despite the fact that there are substantial concerns in sensitivity and discrepancies in measurement techniques. As a consequence, considerable attention has been focused upon the development of novel biomarkers that can be utilized with more clinical efficacy than chromogranin-A. In addition to amplifying the diagnostic/prognostic landscape, the need to calibrate the efficacy of biological targeted therapy has further accelerated the development of molecular biomarkers. At the 2013 American Society of Clinical Oncology (ASCO) Annual Meeting, Chou et al. (Abstract #e15151) presented data that chromogranin A levels can be monitored during treatment to predict clinical outcome. Modlin et al. (Abstract #4137), demonstrated a promising novel biomarker, serum multi-transcript molecular signature. Grande et al. (Abstract #4140), Heetfield et al. (Abstract #e15071) and Casanovas et al. (Abstract #4139) described sVEGFR2, p-mTOR and IGF1R as molecular markers with potential for use in targeted therapy trials. The authors review and summarize these abstracts in this article.
description: JOP. Journal of the Pancreas, Vol 14, N° 4 (2013): July - p. 304-474
Optimal Lyapunov-based quantum control for quantum systems
Creators: name: Hou, S. C.
name: Khan, M. A.
name: Dong, Daoyi
name: Petersen, Ian R.
name: Yi, X. X.
Publisher: name: arXiv
Year: 2012
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Quantum Lyapunov control was developed in order to transform a quantum system from arbitrary initial states to a target state. The idea is to find control fields that steer the Lyapunov function to zero as $t\rightarrow \infty$, meanwhile the quantum system is driven to the target state. In order to shorten the time required to reach the target state, we propose two designs to optimize Lyapunov control in this paper. The first design makes the Lyapunov function decrease as fast as possible with a constraint on the total power of control fields, and the second design has the same purpose but with a constraint on each control field. Examples of a three-level system demonstrate that the evolution time for Lyapunov control can be significantly shortened, especially when high control fidelity is required. Besides, this optimal Lyapunov-based quantum control is robust against uncertainties in the free Hamiltonian and decoherence in the system compared to conventional Lyapunov control.
description: 7 paages, 6 figures
Hot articles recently published in the field of pancreatology
Creators: name: Fioravanti, Antonella
Publisher: name: JOP. Journal of the Pancreas
Year: 2013
Subjects: Collected Works; Pancreas; Pancreatic Diseases; Pancreatic Neoplasms

description: JOP. Journal of the Pancreas, Vol 14, N° 4 (2013): July - p. 304-474
Additional file 9 of Regulatory regions in natural transposable element insertions drive interindividual differences in response to immune challenges in Drosophila
Creators: name: Ullastres, Anna
name: Merenciano, Miriam
name: González, Josefa
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 9. Review history.
Extra-Pancreatic Infections in Acute Pancreatitis: Supporting or Main Actor into the Disease’s Outcome?
Creators: name: Uomo, Generoso
Publisher: name: JOP. Journal of the Pancreas
Year: 2013
Subjects: Intraabdominal Infections; Necrosis; Pancreatitis, Acute Necrotizing; Pneumonia; Sepsis; Urinary Tract Infections

description: JOP. Journal of the Pancreas, Vol 14, N° 4 (2013): July - p. 304-474
Craniorphnus Kolbe 1895
Creators: name: Allsopp, Peter G.
name: Schoolmeesters, Paul
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Craniorphnus

description: Craniorphnus Kolbe, 1895
[1 species].
Type species Craniorphnus grandiceps Kolbe, 1895, by monotypy.
description: Published as part of Allsopp, Peter G. & Schoolmeesters, Paul, 2024, All genera of the world: Subfamilies Prototroginae, Cretoscarabaeinae, Dynamopodinae, Electrorubesopsinae, Phaenomeridinae, Orphninae, Allidiostomatinae, Aclopinae, Lichniinae, Melolonthinae, Oncerinae, Podolasiinae, Sericinae, Sericoidinae (Animalia: Arthropoda: Insecta: Coleoptera: Scarabaeidae), pp. 104-175 in Megataxa 12 (1) on page 107, DOI: 10.11646/megataxa.12.1.2, http://zenodo.org/record/14984437
A Determination of the Intergalactic Redshift Dependent UV-Optical-NIR Photon Density Using Deep Galaxy Survey Data and the Gamma-ray Opacity of the Universe
Creators: name: Stecker, Floyd W.
name: Malkan, Matthew A.
name: Scully, Sean T.
Publisher: name: arXiv
Year: 2012
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We calculate the intensity and photon spectrum of the intergalactic background light (IBL) as a function of redshift using an approach based on observational data obtained in many different wavelength bands from local to deep galaxy surveys. This allows us to obtain an empirical determination of the IBL and to quantify its observationally based uncertainties. Using our results on the IBL, we then place 68% confidence upper and lower limits on the opacity of the universe to gamma-rays, free of the theoretical assumptions that were needed for past calculations. We compare our results with measurements of the extragalactic background light and upper limits obtained from observations made by the Fermi Gamma-ray Space Telescope.
description: 32 pages, 6 figures, Accepted for publication in the Astrophysical Journal
Autocoscienza e riconoscimento nella Fenomenologia dello spirito di Hegel
Creators: name: IBER, Christian
Publisher: name: Post-filosofie
Year: 2017

description: Post-filosofie, N. 4 (2007): Anno 3. Numero 4. Riconoscimento, Dialettica e Fenomenologia. A duecent’anni dalla Fenomenologia dello Spirito di Hegel
Additional file 1 of Development of a neutralization monoclonal antibody with a broad neutralizing effect against SARS-CoV-2 variants
Creators: name: Ko, Hae Li
name: Lee, Deuk-ki
name: Kim, Younghyeon
name: Jang, Hui Jeong
name: Lee, Youn Woo
name: Lee, Ho-Young
name: Seok, Sang-Hyuk
name: Park, Jun Won
name: Limb, Jin-Kyung
name: On, Da In
name: Yun, Jun-Won
name: Lyoo, Kwang-Soo
name: Song, Daesub
name: Yeom, Minjoo
name: Lee, Hanbyeul
name: Seong, Je Kyung
name: Lee, Sungjin
Publisher: name: figshare
Year: 2023
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Biotechnology
subject: Evolutionary Biology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Additional file 1. Additional material and figures.
Geobius Brulle 1832
Creators: name: Allsopp, Peter G.
name: Schoolmeesters, Paul
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Carabidae
Geobius

description: Geobius Brullé, 1832 (not Geobius Dejean, 1831).
Type species Geobius cornifrons Brullé, 1832, by monotypy. Objective synonym of Hybalus Dejean.
description: Published as part of Allsopp, Peter G. & Schoolmeesters, Paul, 2024, All genera of the world: Subfamilies Prototroginae, Cretoscarabaeinae, Dynamopodinae, Electrorubesopsinae, Phaenomeridinae, Orphninae, Allidiostomatinae, Aclopinae, Lichniinae, Melolonthinae, Oncerinae, Podolasiinae, Sericinae, Sericoidinae (Animalia: Arthropoda: Insecta: Coleoptera: Scarabaeidae), pp. 104-175 in Megataxa 12 (1) on page 107, DOI: 10.11646/megataxa.12.1.2, http://zenodo.org/record/14984437
Uniqueness in Calderon's problem with Lipschitz conductivities
Creators: name: Haberman, Boaz
name: Tataru, Daniel
Publisher: name: arXiv
Year: 2011
Subjects: subject: Analysis of PDEs (math.AP)
subject: FOS: Mathematics
subject: 35R30

description: We use X^{s,b}-inspired spaces to prove a uniqueness result for Calderon's problem in a Lipschitz domain under the assumption that the conductivity is Lipschitz. For Lipschitz conductivities, we obtain uniqueness for conductivities close to the identity in a suitable sense. We also prove uniqueness for arbitrary C^1 conductivities.
description: 14 pages
Plebejus pylaon
Creators: name: Aistleitner, Eyjolf
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Lycaenidae
Plebejus
Plebejus pylaon

description: Plebejus pylaon (FISCHER VON W ALDHEIM, 1832)
 B e l e g e: Italien, Bozen, Schlanders, Schlandrauntal, 7.7.1986, 1♂ 1♀, leg. Anonymus.
V e r b r e i t u n g: Chorotyp eurosibirisch; Europa, in lokalen Populationen von Andalusien bis zum Südural, Vorderasien (Türkei, N-Iran), Zentralasien (Kasachstan, Tian Shan), Sibirien (Altaj), Mongolei, NW-China.
description: Published as part of Aistleitner, Eyjolf, 2021, Zur Chorologie und Faunistik der Tagfalter in den Ost- und Südalpen 1. Tagfalter (Papilionoidea) aus der Sammlung von Herbert Meier † sowie Daten aus den Sammlungen des Entomologischen Forschungsmuseums EFMEA in Feldkirch, pp. 787-867 in Linzer biologische Beiträge 52 (2) on page 813, DOI: 10.5281/zenodo.10086880
Additional file 5 of Identification, expression, and artificial selection of silkworm epigenetic modification enzymes
Creators: name: Gao, Rui
name: Li, Chun-Lin
name: Tong, Xiao-Ling
name: Han, Min-Jin
name: Lu, Kun-Peng
name: Liang, Shu-Bo
name: Hu, Hai
name: Luan, Yue
name: Zhang, Bi-Li
name: Liu, Yan-Yu
name: Dai, Fang-Yin
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 5 : Figure S2. Selective sweeping of BmEMEs during breeding phases of silkworm. 44 BmEMEs, 1–44, are grouped and represented by different colors, related to Additional file 2: Table S2. The scale number *1000 equal to the length (bp) of the gene region. From the outer ring to the inner ring, are the FST histograms between local and improved silkworm, plots of RODbreeding and lines of πimproved and πlocal. Range of y-axis of the histogram, plot, and lines are 0–0.3, 0–1, 0–0.05, and 0–0.05. Histograms of FST and plots of ROD in black together indicate the identified selective sweeps associated with breeding, i.e., the windows of the highest 1% FST local_improved, the highest 1% of RODbreeding and the lowest 5% of πimproved (πimproved < 0.000256, FST local_improved > 0.2002 and RODbreeding > 0.9872). The gene with names indicates potential selected genes, which include the selective sweeps.
A Retrospective Study of Capecitabine/Temozolomide (CAPTEM) Regimen in the Treatment of Metastatic Pancreatic Neuroendocrine Tumors (pNETs) after Failing Previous Therapy
Creators: name: Saif, Muhammad Wasif
name: Kaley, Kristin
name: Brennan, Marianne
name: Garcon, Marie Carmel
name: Rodriguez, Gladys
name: Rodriguez, Teresa
Publisher: name: JOP. Journal of the Pancreas
Year: 2013
Subjects: Neuroendocrine tumors; pancreatic cancer; capecitabine; temozolomide

description: Context Pancreatic neuroendocrine tumors (pNETs) are notoriously resistant to currently available chemotherapy agents. Preclinical data has suggested synergy between temozolomide and capecitabine. Objective To report a retrospective data on the efficacy and safety of capecitabine and temozolomide (CAPTEM regimen) in patients with metastatic pancreatic neuroendocrine tumors (pNETs) who have failed prior therapies. Methods We reviewed the medical records of 7 patients with metastatic pNETs who had had progressive cancer prior to treatment despite therapy, including long-acting release octreotide (60 mg/month), chemotherapy and hepatic chemoembolization. Capecitabine was administered at a flat dose of 1,000 mg orally twice daily on days 1-14 and temozolomide 200 mg/m2 was given in two divided doses daily on days 10-14 of a 28-day cycle. Tumor assessments were repeated every two cycles and serum tumor markers were measured every cycle. Response to treatment was assessed using Response Evaluation Criteria in Solid Tumors (RECIST) parameters, and toxicity was graded using the National Cancer Institute Common Terminology Criteria for Adverse Events (CTCAE), version 3.0. Results Among 7 patients treated, three patients achieved a partial response, and two patients had stable disease. Total response rate was 43%, and clinical benefit (responders and stable disease) was 71%. Median duration of response was 8 months (range: 4-12 months). Grade 3 and 4 toxicities included grade 3 thrombocytopenia in one patient and grade 3 fatigue in one patient. The most common toxicities were grade 1 and 2 neutropenia, grade 1 fatigue, grade 1 and 2 hand-foot syndrome. Conclusions Our retrospective study showed that modified CAPTEM regimen was well-tolerated and produced comparable response to historical data in neuroendocrine tumors, including pNETs. Our study is unique as it only included patients with pNETs. Further prospective studies are warranted to evaluate the combination of CAPTEM regimen with targeted therapies in pNETs.
description: JOP. Journal of the Pancreas, Vol 14, N° 5 (2013): September - p. 475-527
Endoscopic Ultrasound Guided Fine Needle Aspiration for Diagnosis of Pancreatic Tuberculosis
Creators: name: Sharma, Vishal
name: Rana, Surinder S
name: Bhasin, Deepak K
Publisher: name: JOP. Journal of the Pancreas
Year: 2013
Subjects: Endosonography; Pancreas; Tuberculosis

description: JOP. Journal of the Pancreas, Vol 14, N° 5 (2013): September - p. 475-527
Localization of gravity in brane world with arbitrary extra dimensions
Creators: name: Yazdani, A. M.
name: Jalalzadeh, S.
name: Atazadeh, K.
Publisher: name: arXiv
Year: 2012
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We study the induced 4-dimensional linearized Einstein field equations in an m-dimensional bulk space by means of a confining potential. It is shown that in this approach the mass of graviton is quantized. The cosmological constant problem is also addressed within the context of this approach. We show that the difference between the values of the cosmological constant in particle physics and cosmology stems from our measurements in two different scales, small and large.
description: 8 pages. arXiv admin note: substantial text overlap with arXiv:gr-qc/0408004, arXiv:gr-qc/0607067, arXiv:0704.1035, arXiv:0707.3558, arXiv:0710.2666
Additional file 1 of The non-canonical mechanism of ER stress-mediated progression of prostate cancer
Creators: name: Pachikov, Artem N.
name: Gough, Ryan R.
name: Christy, Caroline E.
name: Morris, Mary E.
name: Casey, Carol A.
name: LaGrange, Chad A.
name: Bhat, Ganapati
name: Kubyshkin, Anatoly V.
name: Fomochkina, Iryna I.
name: Zyablitskaya, Evgeniya Y.
name: Makalish, Tatiana P.
name: Golubinskaya, Elena P.
name: Davydenko, Kateryna A.
name: Eremenko, Sergey N.
name: Riethoven, Jean-Jack M.
name: Maroli, Amith S.
name: Payne, Thomas S.
name: Powers, Robert
name: Lushnikov, Alexander Y.
name: Macke, Amanda J.
name: Petrosyan, Armen
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer

description: Additional file 1: Fig. S1. (A, B). IF staining of RWPE-1 cells to detect colocalization of (A) S1P (green) and (B) S2P (green) with different trans-Golgi markers: GCC185 (red), GCC88 (red), TMF (red), and Golgin-245 (red). All images were acquired with the same imaging parameters, nucleus – blue, DAPI; bars, 10 μm. White boxes indicate the cell enlarged and shown at the right. (C) Quantification of the Pearson coefficient of colocalization for the cells presented in A and B (N = 90 cells from three repeats; **P 1.0). (D) Permutation results (n = 1000) – P value = 0.026)). Table S1: List of identified metabolites from 36 discriminatory features (VIP > 1.0) from supervised OPLS-DA analysis between Ctrl and EtOH-treated samples of the LNCaP cells media based on 106 metabolic features from 2D 1H-13C HSQC NMR spectra. Table S2: List of discriminatory metabolites (p-value
Pancreatic Glucagonoma Metastasising to the Right Ovary Five Years after Initial Surgery: A Case Report
Creators: name: Watt, David Graham
name: Pandanaboyana, Sanjay
name: Herrington, Charles Simon
name: Tait, Iain S
Publisher: name: JOP. Journal of the Pancreas
Year: 2013
Subjects: Glucagonoma; Neoplasm Metastasis; Neuroendocrine Tumors; Ovarian Neoplasms; Pancreatic Neoplasms

description: Context Glucagonomas of the pancreas are neuroendocrine tumours (NETs) that arise from well-differentiated neuroendocrine cells within the pancreatic islets. They are considered to be aggressive NETs and often have metastases at initial presentation. In contrast localised glucagonoma without metastatic spread may have prolonged disease free survival with radical resectional surgery. Case report The authors present a case of a glucagonoma that initially presented with classical necrolytic migratory erythema and a large solitary mass in the body and tail of the pancreas that was surgically resected. Five years after surgery the patient presented with increased serum glucagon levels and a mass in the right ovary. Pathology of the resected ovary after oophorectomy identified this as an isolated metastatic glucagonoma. Conclusion Glucagonoma is a rare pancreatic NET that has significant malignant potential. This is the first case of a pancreatic glucagonoma metastasising to the ovary 5 years after radical distal pancreatosplenectomy.
description: JOP. Journal of the Pancreas, Vol 14, N° 5 (2013): September - p. 475-527
Eupyga Mannerheim 1838
Creators: name: Allsopp, Peter G.
name: Schoolmeesters, Paul
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Eupyga

description: Eupyga Mannerheim, 1838.
Type species Eupyga besckii Mannerheim, 1838, by monotypy. Synonymy by Burmeister (1844).
description: Published as part of Allsopp, Peter G. & Schoolmeesters, Paul, 2024, All genera of the world: Subfamilies Prototroginae, Cretoscarabaeinae, Dynamopodinae, Electrorubesopsinae, Phaenomeridinae, Orphninae, Allidiostomatinae, Aclopinae, Lichniinae, Melolonthinae, Oncerinae, Podolasiinae, Sericinae, Sericoidinae (Animalia: Arthropoda: Insecta: Coleoptera: Scarabaeidae), pp. 104-175 in Megataxa 12 (1) on page 106, DOI: 10.11646/megataxa.12.1.2, http://zenodo.org/record/14984437
Paraegidium Vulcano, Pereira & Martinez 1966
Creators: name: Allsopp, Peter G.
name: Schoolmeesters, Paul
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Paraegidium

description: Paraegidium Vulcano, Pereira & Martinez, 1966
[6 species].
Type species Paraegidium costalimai Vulcano, Pereira & Martinez, 1966, by original designation.
description: Published as part of Allsopp, Peter G. & Schoolmeesters, Paul, 2024, All genera of the world: Subfamilies Prototroginae, Cretoscarabaeinae, Dynamopodinae, Electrorubesopsinae, Phaenomeridinae, Orphninae, Allidiostomatinae, Aclopinae, Lichniinae, Melolonthinae, Oncerinae, Podolasiinae, Sericinae, Sericoidinae (Animalia: Arthropoda: Insecta: Coleoptera: Scarabaeidae), pp. 104-175 in Megataxa 12 (1) on page 107, DOI: 10.11646/megataxa.12.1.2, http://zenodo.org/record/14984437
Riconoscimento, lotta, dominio: il modello hegeliano
Creators: name: RENAULT, Emmanuel
Publisher: name: Post-filosofie
Year: 2017

description: Post-filosofie, N. 4 (2007): Anno 3. Numero 4. Riconoscimento, Dialettica e Fenomenologia. A duecent’anni dalla Fenomenologia dello Spirito di Hegel
B Meson Mixing in Effective Theories of Supersymmetric Higgs Bosons
Creators: name: Altmannshofer, Wolfgang
name: Carena, Marcela
Publisher: name: arXiv
Year: 2011
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We study a minimal flavor violating extension of the MSSM, where higher dimensional operators in the Kahler potential induce tree level non-holomorphic Higgs couplings that are controlled by the scale of the physics beyond the MSSM, and analyze their possible impact on CP violation in Bs and Bd mixing. We consider results on the time dependent CP asymmetries in Bs --> psi phi and Bs --> psi f_0 from LHCb, in Bs --> psi phi from CDF and D0 and in B --> psi K_S from the B factories as well as the measurement of an anomalous like-sign dimuon charge asymmetry at D0. Taking into account the stringent bounds on the branching ratio of the rare Bs --> mu+mu- decay, we investigate to which extent the framework allows to address the observed (2-3)sigma discrepancies in fits of the unitarity triangle. We find that a non-standard Bd mixing phase, that is in agreement with the current bounds on CP violation in Bs mixing, requires the presence of higher dimensional operators both in the Kahler potential and the superpotential. The corresponding region of parameter space is characterized by small tan(beta)~5, a light Higgs spectrum with masses below ~400 GeV and will be probed by future measurements at LHCb.
description: 14 pages, 3 figures. v2: discussion on EDMs and MFV expansion extended, references added, version to be published in PRD
Additional file 7 of Identification, expression, and artificial selection of silkworm epigenetic modification enzymes
Creators: name: Gao, Rui
name: Li, Chun-Lin
name: Tong, Xiao-Ling
name: Han, Min-Jin
name: Lu, Kun-Peng
name: Liang, Shu-Bo
name: Hu, Hai
name: Luan, Yue
name: Zhang, Bi-Li
name: Liu, Yan-Yu
name: Dai, Fang-Yin
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 7 : Figure S3. (A) Relative expression of transcription factors in the head, testis, ovaries, and nerves of 3rd-d of the fifth instar stage of larvae of B. mandaina and B. mori, which was predicted in the upstream of BmSuv4–20 and BmDNMT2. (B) Tissue expression pattern of transcription factors Bmct and BmDbx in the 3rd-d of the fifth instar stage of larvae of B. mandaina and B. mori. Sw22934 was used as a reference; three replicates were used per time point.
Additional file 1 of Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs
Creators: name: Colquhoun, Rachel M.
name: Hall, Michael B.
name: Lima, Leandro
name: Roberts, Leah W.
name: Malone, Kerri M.
name: Hunt, Martin
name: Letcher, Brice
name: Hawkey, Jane
name: George, Sophie
name: Pankhurst, Louise
name: Iqbal, Zamin
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: A: Supplementary figures 1-13. B: Supplementary tables 1-2. C: Supplementary algorithms 1-3. D: Detailed data availability. E: Supplementary animations 1-2.
Aegidinus Arrow 1904
Creators: name: Allsopp, Peter G.
name: Schoolmeesters, Paul
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Aegidinus

description: Aegidinus Arrow, 1904
[16 species].
Type species Aegidium guianensis Westwood, 1845, by subsequent designation of Lucas (1920).
description: Published as part of Allsopp, Peter G. & Schoolmeesters, Paul, 2024, All genera of the world: Subfamilies Prototroginae, Cretoscarabaeinae, Dynamopodinae, Electrorubesopsinae, Phaenomeridinae, Orphninae, Allidiostomatinae, Aclopinae, Lichniinae, Melolonthinae, Oncerinae, Podolasiinae, Sericinae, Sericoidinae (Animalia: Arthropoda: Insecta: Coleoptera: Scarabaeidae), pp. 104-175 in Megataxa 12 (1) on page 107, DOI: 10.11646/megataxa.12.1.2, http://zenodo.org/record/14984437
Low Mach number limit for the full compressible magnetohydrodynamic equations with general initial data
Creators: name: Jiang, Song
name: Ju, Qiangchang
name: Li, Fucai
name: Xin, Zhouping
Publisher: name: arXiv
Year: 2011
Subjects: subject: Analysis of PDEs (math.AP)
subject: FOS: Mathematics
subject: 76W05, 35B40

description: The low Mach number limit for the full compressible magnetohydrodynamic equations with general initial data is rigorously justified in the whole space $\mathbb{R}^3$. The uniform in Mach number estimates of the solutions in a Sobolev space are obtained on a time interval independent of the Mach number. The limit is proved by using the established uniform estimates and a theorem due to Métiver and Schochet [Arch. Ration. Mech. Anal. 158 (2001), 61-90] for the Euler equations that gives the local energy decay of the acoustic wave equations.
description: 29pages. Final version. We rewrote some paragraphs in the introduction, added two references, and corrected some typos
title:  Faculty Standardization of Dental Hygiene Instrumentation Skill Evaluation: A Calibration Exercise
Creators: name: Smela, Diane-Marie
Publisher: name: Old Dominion University Libraries
Year: 1981

description: Faculty must be standardized so that student skills are assessed in an unbiased, equal fashion. The purpose of this study was to determine the impact of calibration on dental hygiene faculty standardization. Examples of correct and incorrect instrumentation skill performance were demonstrated and discussed during the calibration exercise. Groups simultaneously viewed instrumentation skills while assessing correct or incorrect performance. Group standardization was determined through analysis of answer key agreement, intra-rater reliability, and inter-rater reliability. Data were statistically analyzed through the use of a z-test for both answer key agreement and inter-rater reliability, and chi-square (x2) for inter-rater reliability (a=0.05). Calibrating dental hygiene evaluators did not have statistically significant effects on their ability to achieve answer key agreement or intra-rater reliability. Significant results of x2 for effects of calibration on inter-rater reliability revealed the non-calibrated group more consistent in assessing skills (x2=2.80; p=.0475). Standardization as measured by answer key agreement, intra-rater, and inter-rater reliability was not influenced by the calibration exercise. Further exploration of methods to improve faculty standardization are needed to ensure that dental hygiene students receive fair and objective skill performance evaluation.
Osservazioni sul ruolo del linguaggio nel VI capitolo dellaFenomenologia dello spirito
Creators: name: DE BORTOLI, Caterina
Publisher: name: Post-filosofie
Year: 2017

description: Post-filosofie, N. 4 (2007): Anno 3. Numero 4. Riconoscimento, Dialettica e Fenomenologia. A duecent’anni dalla Fenomenologia dello Spirito di Hegel
Sympathetic Partial and Full Filament Eruptions Observed in One Solar Breakout Event
Creators: name: Shen, Yuandeng
name: Liu, Yu
name: Su, Jiangtao
Publisher: name: arXiv
Year: 2012
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We report two sympathetic solar eruptions, including a partial and a full flux rope eruption in a quadrupolar magnetic region, where a large and a small filament resided above the middle and the east neutral lines respectively. The large filament first rose slowly at a speed of 8 km/s for 23 minutes and then it was accelerated to 102 km/s. Finally, this filament erupted successfully and caused a coronal mass ejection. During the slow rising phase, various evidence for breakout-like external reconnection has been identified at high and low temperature lines. The eruption of the small filament started around the end of the large filament's slow rising. This filament erupted partially and no associating coronal mass ejection could be detected. Based on a potential field extrapolation, we find that the topology of the three-dimensional coronal field above the source region is composed of three low-lying lobes and a large overlying flux system, and a null point located between the middle lobe and the overlying antiparallel flux system. We propose a possible mechanism within the framework of the magnetic breakout model to interpret the sympathetic filament eruptions, in which the magnetic implosion mechanism is thought to be a possible linkage between the sympathetic eruptions, and the external reconnection at the null point transfers field lines from the middle lobe to the lateral lobes and thereby leads to the full (partial) eruption of the observed large (small) filament. Other possible mechanisms are also discussed briefly. We conclude that the structural properties of coronal fields are important for producing sympathetic eruptions.
description: Published in ApJ. http://iopscience.iop.org/0004-637X/750/1/12/
Improved Estimators for the Self-Energy and Vertex Function in Hybridization Expansion Continuous-Time Quantum Monte Carlo Simulations
Creators: name: Hafermann, Hartmut
name: Patton, Kelly R.
name: Werner, Philipp
Publisher: name: arXiv
Year: 2011
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We propose efficient measurement procedures for the self-energy and vertex function of the Anderson impurity model within the hybridization expansion continuous-time quantum Monte Carlo algorithm. The method is based on the measurement of higher-order correlation functions related to the quantities being sought through the equation of motion, a technique previously introduced in the NRG context. For the case of interactions of density-density type, the additional correlators can be obtained at essentially no additional computational cost. In combination with a recently introduced method for filtering the Monte Carlo noise using a representation in terms of orthogonal polynomials, we obtain data with unprecedented accuracy. This leads to an enhanced stability in analytical continuations of the self-energy or in two-particle based theories such as the dual fermion approach. As an illustration of the method we reexamine the previously reported spin-freezing and high-spin to low-spin transitions in a two-orbital model with density-density interactions. In both cases, the vertex function undergoes significant changes, which suggests significant corrections to the dynamical mean-field solutions in dual fermion calculations.
description: published version; 16 pages, 20 figures
Extrapancreatic Neoplasms in Patients with IPMN: Is There an Increased Risk?
Creators: name: Pugliese, Luigi
name: Del Chiaro, Marco
name: D'Haese, Jan
name: Marchegiani, Giovanni
name: Wenzel, Patrick
name: Ceyhan, Guralp
name: Keskin, Muharrem
Publisher: name: JOP. Journal of the Pancreas
Year: 2013
Subjects: Meeting Abstracts; Pancreas

description: Context The increasing detection of intraductal papillary mucinous neoplasm of the pancreas (IPMN) in general population over the last decade has led to observe a probable association with synchronous or metachronous extrapancreatic neoplasm (EPN) in these patients despite no unequivocal proof was found so far. Objectives A systematic review of the available literature has been performed to clarify the level of evidence and knowledge on this issue. Methods We performed a PubMed search with the following search terms: “extrapancreatic”, “non pancreatic”, “additional pancreatic”, “additional primary” and alternatively matched with “neoplasms/tumors/cancers/ malignancies/lesions”. Then we selected only those articles specific for IPMN among the obtained results and proceeded to the analyses of data. The review was conducted in a systematic manner according to the PRISMA statement rules. Results selection process led to identify and include a total of fifteen articles. An increased risk for extrapancreatic malignancies, mostly gastric and colon cancer, was described in the majority of the selected studies which were however all retrospective and only one of them multicentre. Unexpectedly, the association between IPMN and EPN was not reported by the largest and only prospective study available. Conclusion Current literature does not allow any definitive conclusion on this subject. The general opinion in favor of a higher prevalence of EPN in IPMN patients remains therefore controversial. No specific screening protocols in addition to standard surveillance and diagnostic examinations for common neoplasms should be recommended in these patients until further evidence will be provided.
description: JOP. Journal of the Pancreas, Vol 14, N° 5S (2013): September (Suppl.) - p. 528-602
Synchronous Triple Cancers of the Pancreas, Stomach, and Cecum Treated with S-1 Followed by Pancrelipase Treatment of Pancreatic Exocrine Insufficiency
Creators: name: Ohtsubo, Koushiro
name: Ishikawa, Daisuke
name: Nanjo, Shigeki
name: Takeuchi, Shinji
name: Yamada, Tadaaki
name: Mouri, Hisatsugu
name: Yamashita, Kaname
name: Yasumoto, Kazuo
name: Gabata, Toshifumi
name: Matsui, Osamu
name: Ikeda, Hiroko
name: Takamatsu, Yasushi
name: Iwakami, Sakae
name: Yano, Seiji
Publisher: name: JOP. Journal of the Pancreas
Year: 2013
Subjects: Cecal Neoplasms; Drug Therapy; Exocrine Pancreatic Insufficiency; Genes, ras; Pancreatic Neoplasms; Pancrelipase; Stomach Neoplasms

description: Context Pancreatic cancer is frequently complicated by malignancies in other organs. However, synchronous triple cancers including pancreatic cancer have been seldom reported in the English language literature. Case report We describe the rare case of a 77-year-old man with triple cancers of the pancreas, stomach, and cecum. Biopsies revealed that all three tumors were adenocarcinomas. The pancreatic and gastric tumors were positive for cytokeratin 7 and negative for cytokeratin 20, whereas the cecal tumor was negative for cytokeratin 7 and positive for cytokeratin 20. K-ras mutations were present at codon 12 in the pancreatic tumor and at codon 13 in the cecal tumor, but were absent from the gastric tumor. Since the three tumors had different characteristics, the patient was diagnosed with synchronous triple cancers. Because invasive surgery was required to remove all three tumors and the patient had risk factors for surgery, we elected to treat him with chemotherapy. All three cancers were markedly reduced in size by treatment with cycles of 100 mg/day S-1 for 2 weeks, followed by a 1-week rest. The patient later developed hypoproteinemia and anasarca, which was diagnosed as pancreatic exocrine insufficiency due to pancreatic head cancer. Treatment with pancrelipase resulted in dramatic improvements in hypoproteinemia and anasarca. Conclusions This is the first case report in which S-1 was effective in triple cancers of the pancreas, stomach, and cecum. Patients with pancreatic head cancer should be monitored for pancreatic exocrine insufficiency.
description: JOP. Journal of the Pancreas, Vol 14, N° 5 (2013): September - p. 475-527
Pitfalls of Path Integrals: Amplitudes for Spacetime Regions and the Quantum Zeno Effect
Creators: name: Halliwell, J. J.
name: Yearsley, J. M.
Publisher: name: arXiv
Year: 2012
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Path integrals appear to offer natural and intuitively appealing methods for defining quantum-mechanical amplitudes for questions involving spacetime regions. For example, the amplitude for entering a spatial region during a given time interval is typically defined by summing over all paths between given initial and final points but restricting them to pass through the region at any time. We argue that there is, however, under very general conditions, a significant complication in such constructions. This is the fact that the concrete implementation of the restrictions on paths over an interval of time corresponds, in an operator language, to sharp monitoring at every moment of time in the given time interval. Such processes suffer from the quantum Zeno effect - the continual monitoring of a quantum system in a Hilbert subspace prevents its state from leaving that subspace. As a consequence, path integral amplitudes defined in this seemingly obvious way have physically and intuitively unreasonable properties and in particular, no sensible classical limit. In this paper we describe this frequently-occurring but little-appreciated phenomenon in some detail, showing clearly the connection with the quantum Zeno effect. We then show that it may be avoided by implementing the restriction on paths in the path integral in a "softer" way. The resulting amplitudes then involve a new coarse graining parameter, which may be taken to be a timescale ε, describing the softening of the restrictions on the paths. We argue that the complications arising from the Zeno effect are then negligible as long as ε>> 1/ E, where E is the energy scale of the incoming state.
description: 24 pages, 6 figures. Published version
Una ricostruzione «fenomenologica» del dibattito americano su Hegel
Creators: name: CARNEVALE, Antonio
Publisher: name: Post-filosofie
Year: 2017

description: Post-filosofie, N. 4 (2007): Anno 3. Numero 4. Riconoscimento, Dialettica e Fenomenologia. A duecent’anni dalla Fenomenologia dello Spirito di Hegel
Additional file 1 of Uncoupling p38α nuclear and cytoplasmic functions and identification of two p38α phosphorylation sites on β-catenin: implications for the Wnt signaling pathway in CRC models
Creators: name: Lepore Signorile, Martina
name: Fasano, Candida
name: Forte, Giovanna
name: De Marco, Katia
name: Sanese, Paola
name: Disciglio, Vittoria
name: Di Nicola, Elisabetta
name: Pantaleo, Antonino
name: Simone, Cristiano
name: Grossi, Valentina
Publisher: name: figshare
Year: 2023
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Science Policy
subject: Developmental Biology
subject: Cancer

description: Additional file 1: Figure S1. p38α pharmacological inhibition or genetic ablation modulates p-GSK3-β levels. (A-B) Immunoblotting analysis of p-β-catenin (S33/37/T41) (phospho-degradation signal) and p-GSK3β (T390) (phospho-inhibition signal) in HCT-116 CRC cells treated or not with the p38α inhibitor ralimetinib (10 μM) for 48 h (A) or silenced by genetic ablation for p38α (B). CTRL = Control. Results are representative of at least three independent experiments. Figure S2. Immunohistochemistry quantification of p38α and β-catenin protein expression in a CRC mouse model. Immunohistochemistry quantification of p38α and β-catenin protein expression in colon tissue from C57BL/6 and AOM-APCMin/+ mice treated as indicated in Fig. 2. Statistical analysis was performed using Student’s t-test: *P < 0.05 vs C57BL/6; #P < 0.05 vs. DMSO. Figure S3. Quantification of p38α and β-catenin immunofluorescence data. Quantification of the immunofluorescence analysis of p38α and β-catenin co-staining experiments shown in Fig. 4. Statistical analysis was performed using Student’s t-test: *P < 0.05 vs No serum; #P < 0.05 vs. DMSO. Figure S4. Analysis of β-catenin genetic ablation efficiency. (A) Quantification results of the digital droplet PCR (ddPCR) assay (copies/µL) of c-Myc mRNA expression as processed by QuantaSoft. HCT-116 CRC cells were silenced by genetic ablation for β-catenin and then treated or not with the p38α inhibitor ralimetinib (10 μM) for 24 h. The error bars represent the maximum and minimum Poisson distribution for the 95% confidence interval generated by QuantaSoft. (B) Immunoblotting analysis of c-Myc protein amount in HCT-116 CRC cells treated as in A. β-actin was used as a loading control. Results are representative of at least three independent experiments.
Capacità e possibilità. Una riflessione sulle implicazioni della libertà individuale tra diritti e norme
Creators: name: BONITO OLIVA, Rossella
Publisher: name: Post-filosofie
Year: 2017

description: Post-filosofie, N. 4 (2007): Anno 3. Numero 4. Riconoscimento, Dialettica e Fenomenologia. A duecent’anni dalla Fenomenologia dello Spirito di Hegel
Goniorphnus Arrow 1911
Creators: name: Allsopp, Peter G.
name: Schoolmeesters, Paul
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Goniorphnus

description: Goniorphnus Arrow, 1911 a
[1 species].
Type species Goniorphnus felschei Arrow, 1911, by monotypy.
description: Published as part of Allsopp, Peter G. & Schoolmeesters, Paul, 2024, All genera of the world: Subfamilies Prototroginae, Cretoscarabaeinae, Dynamopodinae, Electrorubesopsinae, Phaenomeridinae, Orphninae, Allidiostomatinae, Aclopinae, Lichniinae, Melolonthinae, Oncerinae, Podolasiinae, Sericinae, Sericoidinae (Animalia: Arthropoda: Insecta: Coleoptera: Scarabaeidae), pp. 104-175 in Megataxa 12 (1) on page 107, DOI: 10.11646/megataxa.12.1.2, http://zenodo.org/record/14984437
Additional file 1 of Transition to retirement impact on health and lifestyle habits: analysis from a nationwide Italian cohort
Creators: name: Vigezzi, Giacomo Pietro
name: Gaetti, Giovanni
name: Gianfredi, Vincenza
name: Frascella, Beatrice
name: Gentile, Leandro
name: d’Errico, Angelo
name: Stuckler, David
name: Ricceri, Fulvio
name: Costa, Giuseppe
name: Odone, Anna
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1.
On The Properties Of $q$-Bernstein-Type Polynomials
Creators: name: Araci, Serkan
name: Acikgoz, Mehmet
name: Jolany, Hassan
name: Bagdasaryan, Armen
Publisher: name: arXiv
Year: 2011
Subjects: subject: Number Theory (math.NT)
subject: FOS: Mathematics
subject: 11M06, 11B68, 11S40, 11S80, 28B99, 41A50

description: The aim of this paper is to give a new approach to modified $q$-Bernstein polynomials for functions of several variables. By using these polynomials, the recurrence formulas and some new interesting identities related to the second Stirling numbers and generalized Bernoulli polynomials are derived. Moreover, the generating function, interpolation function of these polynomials of several variables and also the derivatives of these polynomials and their generating function are given. Finally, we get new interesting identities of modified $q$-Bernoulli numbers and $q$-Euler numbers applying $p$-adic $q$-integral representation on $\mathbb {Z}_p$ and $p$-adic fermionic $q$-invariant integral on $\mathbb {Z}_p$, respectively, to the inverse of $q$-Bernstein polynomials.
description: 17 pages, some theorems added to new version
Light-sheets and AdS/CFT
Creators: name: Bousso, Raphael
name: Leichenauer, Stefan
name: Rosenhaus, Vladimir
Publisher: name: arXiv
Year: 2012
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: One may ask whether the CFT restricted to a subset b of the AdS boundary has a well-defined dual restricted to a subset H(b) of the bulk geometry. The Poincare patch is an example, but more general choices of b can be considered. We propose a geometric construction of H. We argue that H should contain the set C of causal curves with both endpoints on b. Yet H should not reach so far from the boundary that the CFT has insufficient degrees of freedom to describe it. This can be guaranteed by constructing a superset of H from light-sheets off boundary slices and invoking the covariant entropy bound in the bulk. The simplest covariant choice is L, the intersection of L^+ and L^-, where L^+ (L^-) is the union of all future-directed (past-directed) light-sheets. We prove that C=L, so the holographic domain is completely determined by our assumptions: H=C=L. In situations where local bulk operators can be constructed on b, H is closely related to the set of bulk points where this construction remains unambiguous under modifications of the CFT Hamiltonian outside of b. Our construction leads to a covariant geometric RG flow. We comment on the description of black hole interiors and cosmological regions via AdS/CFT.
description: 29 pages, 12 figures. published version
A theoretical model obtained in momentum space for charge transport in a system consisting of non-interacting polarons
Creators: name: Marsusi, F.
name: Sabbaghzadeh, J.
Publisher: name: arXiv
Year: 2011
Subjects: subject: Other Condensed Matter (cond-mat.other)
subject: FOS: Physical sciences

description: We developed a theory of charge transport in a system of non-interacting polarons. The theory was conducted to a compact relation through a nonperturbative method based on electron-phonon Hamiltonian. The derived final result represents both two different limits of band and phonon assisted transports which depends on temperature and electron-phonon coupling strength.
description: I have submitted the new version with a few corrections in the equations and in introduction
Terahertz emission by diffusion of carriers and metal-mask dipole inhibition of radiation
Creators: name: Barnes, M. E.
name: McBryde, D.
name: Daniell, G. J.
name: Whitworth, G.
name: Chung, A. L.
name: Quarterman, A. H.
name: Wilcox, K. G.
name: Beere, H. E.
name: Ritchie, D. A.
name: Apostolopoulos, V.
Publisher: name: arXiv
Year: 2011
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: Terahertz (THz) radiation can be generated by ultrafast photo-excitation of carriers in a semiconductor partly masked by a gold surface. A simulation of the effect taking into account the diffusion of carriers and the electric field shows that the total net current is approximately zero and cannot account for the THz radiation. Finite element modelling and analytic calculations indicate that the THz emission arises because the metal inhibits the radiation from part of the dipole population, thus creating an asymmetry and therefore a net current. Experimental investigations confirm the simulations and show that metal-mask dipole inhibition can be used to create THz emitters.
description: 9 pages, 5 figures; Fixed figure 5
Additional file 1 of Transcriptome analysis reveals molecular mechanisms responsive to acute cold stress in the tropical stenothermal fish tiger barb (Puntius tetrazona)
Creators: name: Liu, Lili
name: Zhang, Rong
name: Wang, Xiaowen
name: Zhu, Hua
name: Tian, Zhaohui
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1.