cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
A Wick rotation for EPRL spin foam models
Creators: name: Dona, Pietro
name: Gozzini, Francesco
name: Nicotra, Alessandro
Publisher: name: arXiv
Year: 2021
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We show that the Euclidean and Lorentzian EPRL vertex amplitudes of covariant Loop Quantum Gravity are related through a ``Wick rotation'' of the real Immirzi parameter to purely imaginary values. Our result follows from the simultaneous analytic continuation of the algebras, group elements and unitary irreducible representations of the gauge groups $Spin(4)$ and $SL(2,\mathbb{C})$, applied to the decomposition of the two models in terms of $SU(2)$ invariants and booster functions.
description: 25 pages, 1 figure
Inhibitors of FAP-fluorogen interaction as a multiplex assay tool compound for receptor internalization assays
Creators: name: Wu, Yang
name: Tapia, Phillip H.
name: Gouveia, Kristine
name: Sklar, Larry A
name: Fisher, Gregory
name: Waggoner, Alan
name: Jarvik, Jonathan
name: Gregro, Alison R.
name: Poslusney, Mike
name: Lindsley, Craig W.
name: Stauffer, Shaun R.
Publisher: name: Carnegie Mellon University
Year: 2012
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: A novel assay using fluorogen activating peptide (FAP) technology for G protein-coupled receptor (GPCR) activation and internalization was applied to the human β2AR. This technology avoids microscopy and antibody-based detection methods. A major goal for the project was to identify G-protein independent/β2AR ligands or β2AR biased ligands that induce β2AR internalization. Analysis of the most potent hits in the primary project revealed that they interfered with fluorogen activation by the FAP rather than interacting with the receptor itself. These molecules were pursued further because they had the potential to enable improved assay protocols to monitor receptor trafficking and receptor location in real time. A highly potent compound (ML342, CID 2953239) was declared as a Molecular Libraries Probe Center Network (MLPCN) probe molecule.
MPEC 2025-H182 : 2025 HR5
Creators: name: Minor Planet Center Staff
Publisher: name: The Minor Planet Center
Year: 2025
Subjects: subject: Small Solar System bodies
valueUri: http://astrothesaurus.org/uat/1469
subject: 2025 HR5

description: The Minor Planet Electronic Circulars contain information on unusual minor planets, routine data on comets and natural satellites, and occasional editorial announcements.  They are published on behalf of Division F of the International Astronomical Union by the Minor Planet Center, Smithsonian Astrophysical Observatory, Cambridge, MA 02138, U.S.A.
The Advantage of Increased Resolution in the Study of Quasar Absorption Systems
Creators: name: Narayanan, Anand
name: Misawa, Toru
name: Charlton, Jane C.
name: Ganguly, Rajib
Publisher: name: arXiv
Year: 2006
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We compare a new R = 120,000 spectrum of PG1634+706 (z_QSO = 1.337,m_V = 14.9) obtained with the HDS instrument on Subaru to a R = 45, 000 spectrum obtained previously with HIRES/Keck. In the strong MgII system at z = 0.9902 and the multiple cloud, weak MgII system at z = 1.0414, we find that at the higher resolution, additional components are resolved in a blended profile. We find that two single-cloud weak MgII absorbers were already resolved at R = 45,000, to have b = 2 - 4 km/s. The narrowest line that we measure in the R = 120, 000 spectrum is a component of the Galactic NaI absorption, with b = 0.90+/-0.20 km/s. We discuss expectations of similarly narrow lines in various applications, including studies of DLAs, the MgI phases of strong MgII absorbers, and high velocity clouds. By applying Voigt profile fitting to synthetic lines, we compare the consistency with which line profile parameters can be accurately recovered at R = 45,000 and R = 120,000. We estimate the improvement gained from superhigh resolution in resolving narrowly separated velocity components in absorption profiles. We also explore the influence of isotope line shifts and hyperfine splitting in measurements of line profile parameters, and the spectral resolution needed to identify these effects. Super high resolution spectra of quasars, which will be routinely possible with 20-meter class telescopes, will lead to greater sensitivity for absorption line surveys, and to determination of more accurate physical conditions for cold phases of gas in various environments.
description: To appear in AJ. Paper with better resolution images available at http://www.astro.psu.edu/users/anand/superhigh.AJ.pdf
title: ADCO, Grènetier de Cîteaux : comptes (1499-1503) (11 H 1173), f. 00584
Creators: name: de la Côte-d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2019
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: comptes

description: Grènetier de Cîteaux : comptes (1499-1503), Archives départementales de la Côte-d'Or, (11 H 1173). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Grènetier de Cîteaux : comptes (1499-1503), Archives départementales de la Côte-d'Or, (11 H 1173), f. 00584, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
A resolved and asymmetric ring of PAHs within the young circumstellar disk of IRS 48
Creators: name: Schworer, Guillaume
name: Lacour, Sylvestre
name: Huélamo, Nuria
name: Pinte, Christophe
name: Chauvin, Gaël
name: Foresto, Vincent Coudé du
name: Ehrenreich, David
name: Girard, Julien
name: Tuthill, Peter
Publisher: name: arXiv
Year: 2017
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: For one decade, the spectral-type and age of the $ρ$ Oph object IRS-48 were subject to debates and mysteries. Modelling its disk with mid-infrared to millimeter observations led to various explanations to account for the complex intricacy of dust-holes and gas-depleted regions. We present multi-epoch high-angular-resolution interferometric near-infrared data of spatially-resolved emissions in its first 15AU, known to have very strong Polycyclic Aromatic Hydrocarbon (PAH) emissions within this dust-depleted region. We make use of new Sparse-Aperture-Masking data to instruct a revised radiative-transfer model where SED fluxes and interferometry are jointly fitted. Neutral and ionized PAH, Very Small Grains (VSG) and classical silicates are incorporated into the model; new stellar parameters and extinction laws are explored. A bright (42L$_{\odot}$) central-star with A$_v$=12.5mag and R$_v$=6.5 requires less near-infrared excess: the inner-most disk at $\approx$1AU is incompatible with the data. The revised stellar parameters place this system on a 4 Myr evolutionary track, 4 times younger than previous estimations, in better agreement with the surrounding $ρ$ Oph region and disk-lifetimes observations. The disk-structure converges to a classical-grains outer-disk from 55AU combined with a fully resolved VSG\&PAH-ring, at 11-26 AU. We find two over-luminosities in the PAH-ring at color-temperatures consistent with the radiative transfer simulations; one follows a Keplerian circular orbit at 14AU. We show a depletion of a factor $\approx$5 of classical dust grains compared to VSG\&PAH: the IRS-48 disk is nearly void of dust-grains in the first 55 AU. A 3.5M$_{Jup}$ planet on a 40AU orbit qualitatively explains the new disk-structure.
Evaluation of data in the Iron-Age-Danube database
Creators: name: Mele, Marko
name: Štuhec, Seta
Publisher: name: Zenodo
Year: 2019
Subjects: Iron Age
Cultural Heritage
Database

description: The Iron-Age-Danube project is part of the EU-program Interreg Danube Transnational Programme/ DTP and is funded by the European Regional Development Fund. Duration of the project is between 1st January 2017 and 30th of September 2019. Between April 2017 and October 2018 eleven, project partners and nine associated partners from five countries (Austria, Croatia, Hungary, Slovakia and Slovenia) conducted researches with modern technologies on the archaeological heritage of the Early Iron Age (Hallstatt period) in the frame of four international Archaeological Camps (Camp Austria 2017, Camp Croatia 2017, Camp Slovenia 2018 and Camp Hungary 2018). Furthermore, the project partners established common international strategies for research, protection and sustainable touristic use of archaeological heritage in the whole Danube area. As a tool for the implementation of the strategies, a database was created in collaboration with the Austrian Centre for Digital Humanities (ACDH) / Austrian Academy of Sciences, that helps to evaluate and understand the Iron Age heritage in the term of research activities, the status of monument protection and potential for touristic use. The collected data are accessible to researchers and the general public (https://iron-age-danube.eu/). This is the Supporting document for the development of the Iron Age landscapes strategies in the Danube region (Output 3.2).
Open problems in the wild McKay correspondence and related fields
Creators: name: Yasuda, Takehiko
Publisher: name: arXiv
Year: 2021
Subjects: subject: Algebraic Geometry (math.AG)
subject: Number Theory (math.NT)
subject: FOS: Mathematics
subject: 14E16 (Primary) 11S15, 11R45, 14E30, 14G05, 14D23, 14E18 (Secondary)

description: The wild McKay correspondence is a form of McKay correspondence in terms of stringy invariants that is generalized to arbitrary characteristics. It gives rise to an interesting connection between the geometry of wild quotient varieties and arithmetic on extensions of local fields.
 The principal purpose of this article is to collect open problems on the wild McKay correspondence, as well as those in related fields that the author believes are interesting or important. It also serves as a survey on the present state of these fields.
description: 20 pages
In-gel equilibration for improved protein retention in 2DE-based proteomic workflows.
Creators: name: Van, Phu T.
name: Vinitha  Ganesan
name: Bass, Victor
name: Amritha  Parthasarathy
name: Schlesinger, Danielle
name: Minden, Jonathan
Publisher: name: Carnegie Mellon University
Year: 2014
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: The 2DE is a powerful proteomic technique, with excellent protein separation capabilities where intact proteins are spatially separated by pI and molecular weight. 2DE is commonly used in conjunction with MS to identify proteins of interest. Current 2DE workflow requires several manual processing steps that can lead to experimental variability and sample loss. One such step is the transition between first dimension IEF and second-dimension SDS-PAGE, which requires exchanging denaturants and the reduction and alkylation of proteins. This in-solution-based equilibration step has been shown to be rather inefficient, losing up to 30% of the original starting material through diffusion effects. We have developed a refinement of this equilibration step using agarose stacking gels poured on top of the second-dimension SDS-PAGE gel, referred to as in-gel equilibration. We show that in-gel equilibration is effective at reduction and alkylation in SDS-PAGE gels. Quantification of whole-cell extracts separated on 2DE gels shows that in-gel equilibration increases protein retention, decreased intergel variability, and simplifies 2DE workflow.
Novel Neutron Detectors based on the Time Projection Method
Creators: name: Köhli, M.
name: Desch, K.
name: Gruber, M.
name: Kaminski, J.
name: Schmidt, F. P.
name: Wagner, T.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: FOS: Physical sciences

description: We present the first prototype of a novel thermal neutron detector using the time projection method. The system consists of 8 TimePix ASICS with postprocessed InGrid meshes. Each ASIC has 256 x 256 pixels of 55 mum x 55mum in size with the capability to measure charge or time. This allows to visualize entire conversion particle tracks with their spatial and time information and, by using event reconstruction algorithms, discriminate against the background of others. By using the Scalable Readout System the detector as presented here could also be upscaled to much larger active areas. In the current configuration we could achieve a spatial resolution of $σ= (115\pm8)$ mum.
description: Paper submitted to Physica B: Condensed Matter special issue: Proceedings ICNS 2017
Selective optical addressing of nuclear spins through superhyperfine interaction in rare-earth doped solids
Creators: name: Car, Benjamin
name: Veissier, Lucile
name: Louchet-Chauvet, Anne
name: Gouët, Jean-Louis Le
name: Chanelière, Thierry
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: In Er$^{3+}$:Y$_2$SiO$_5$, we demonstrate the selective optical addressing of the $^{89}$Y$^{3+}$ nuclear spins through their superhyperfine coupling with the Er$^{3+}$ electronic spins possessing large Landé $g$-factors. We experimentally probe the electron-nuclear spin mixing with photon echo techniques and validate our model. The site-selective optical addressing of the Y$^{3+}$ nuclear spins is designed by adjusting the magnetic field strength and orientation. This constitutes an important step towards the realization of long-lived solid-state qubits optically addressed by telecom photons.
description: 5 pages, 4 figures, supplementary material (3 pages)
Duality violations and spectral sum rules
Creators: name: Cata, O.
name: Golterman, M.
name: Peris, S.
Publisher: name: arXiv
Year: 2005
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: High Energy Physics - Lattice (hep-lat)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We study the issue of duality violations in the VV-AA vacuum polarization function in the chiral limit. This is done with the help of a model with an expansion in inverse powers of the number of colors, Nc, allowing us to consider resonances with a finite width. Due to these duality violations, the Operator Product Expansion (OPE) and the moments of the spectral function (e.g. the Weinberg sum rules) do not match at finite momentum, and we analyze this difference in detail. We also perform a comparative study of many of the different methods proposed in the literature for the extraction of the OPE parameters and find that, when applied to our model, they all fare quite similarly. In fact, the model strongly suggests that a significant improvement in precision can only be expected after duality violations are included. To this end, we propose a method to parameterize these duality violations. The method works quite well for the model, and we hope that it may also be useful in future determinations of OPE parameters in QCD.
description: 29 pages, 9 figures, LateX file. Small changes to match journal version
Macrosolen parasiticus Danser 1936
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Santalales
Loranthaceae
Macrosolen
Macrosolen parasiticus

description: Loranthus loniceroides Linnaeus, Species Plantarum, ed. 2, 1: 472. 1762, nom. illeg.
"Habitat in Asiae arboribus." RCN: 2563.
 Replaced synonym: Lonicera parasitica L. (1753).
Type not designated.
Original material: as replaced synonym.
 Current name: Macrosolen parasiticus (L.) Danser (Loranthaceae).
 Note: A. superfluous name for Lonicera parasitica L.(1753).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part L), pp. 610-650 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 641, DOI: 10.5281/zenodo.291971
From Near to Eternity: Spin-glass planting, tiling puzzles, and constraint satisfaction problems
Creators: name: Hamze, Firas
name: Jacob, Darryl C.
name: Ochoa, Andrew J.
name: Perera, Dilina
name: Wang, Wenlong
name: Katzgraber, Helmut G.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Computational Physics (physics.comp-ph)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We present a methodology for generating Ising Hamiltonians of tunable complexity and with a priori known ground states based on a decomposition of the model graph into edge-disjoint subgraphs. The idea is illustrated with a spin-glass model defined on a cubic lattice, where subproblems, whose couplers are restricted to the two values {-1,+1}, are specified on unit cubes and are parametrized by their local degeneracy. The construction is shown to be equivalent to a type of three-dimensional constraint satisfaction problem known as the tiling puzzle. By varying the proportions of subproblem types, the Hamiltonian can span a dramatic range of typical computational complexity, from fairly easy to many orders of magnitude more difficult than prototypical bimodal and Gaussian spin glasses in three space dimensions. We corroborate this behavior via experiments with different algorithms and discuss generalizations and extensions to different types of graphs.
description: 18 pages, 14 figures
Influenza virus infection elicits protective antibodies and T cells specific for host cell antigens also expressed as tumor-associated antigens: a new view of cancer immunosurveillance.
Creators: name: Uzoma K. Iheagwara
name: Beatty, Pamela L.
name: Van, Phu T.
name: Ross, Ted M.
name: Minden, Jonathan
name: Finn, Olivera J.
Publisher: name: Carnegie Mellon University
Year: 2014
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Most tumor-associated antigens (TAA) are self-molecules that are abnormally expressed in cancer cells and become targets of antitumor immune responses. Antibodies and T cells specific for some TAAs have been found in healthy individuals and are associated with lowered lifetime risk for developing cancer. Lower risk for cancer has also been associated with a history of febrile viral diseases. We hypothesized that virus infections could lead to transient expression of abnormal forms of self-molecules, some of which are TAAs; facilitated by the adjuvant effects of infection and inflammation, these molecules could elicit specific antibodies, T cells, and lasting immune memory simultaneously with immunity against viral antigens. Such infection-induced immune memory for TAA would be expected to provide life-long immune surveillance of cancer. Using influenza virus infection in mice as a model system, we tested this hypothesis and demonstrated that influenza-experienced mice control 3LL mouse lung tumor challenge better than infection-naive control mice. Using 2D-difference gel electrophoresis and mass spectrometry, we identified numerous molecules, some of which are known TAAs, on the 3LL tumor cells recognized by antibodies elicited by two successive influenza infections. We studied in detail immune responses against glyceraldehyde-3-phosphate dehydrogenase (GAPDH), histone H4, HSP90, malate dehydrogenase 2, and annexin A2, all of which were overexpressed in influenza-infected lungs and in tumor cells. Finally, we show that immune responses generated through vaccination against peptides derived from these antigens correlated with improved tumor control.
Stochastic resonance in stochastic PDEs
Creators: name: Berglund, Nils
name: Nader, Rita
Publisher: name: arXiv
Year: 2021
Subjects: subject: Probability (math.PR)
subject: Mathematical Physics (math-ph)
subject: Analysis of PDEs (math.AP)
subject: FOS: Mathematics
subject: FOS: Physical sciences
subject: 60H15, 60G17 (primary), 34F15, 37H20 (secondary)

description: We consider stochastic partial differential equations (SPDEs) on the one-dimensional torus, driven by space-time white noise, and with a time-periodic drift term, which vanishes on two stable and one unstable equilibrium branches. Each of the stable branches approaches the unstable one once per period. We prove that there exists a critical noise intensity, depending on the forcing period and on the minimal distance between equilibrium branches, such that the probability that solutions of the SPDE make transitions between stable equilibria is exponentially small for subcritical noise intensity, while they happen with probability exponentially close to $1$ for supercritical noise intensity. Concentration estimates of solutions are given in the $H^s$ Sobolev norm for any $s<\frac12$. The results generalise to an infinite-dimensional setting those obtained for $1$-dimensional SDEs in [Nils Berglund and Barbara Gentz. A sample-paths approach to noise-induced synchronization: stochastic resonance in a double-well potential. Ann. Appl. Probab., 12(4):1419-1470, 2002].
description: 33 pages, 4 figures
Molecular determinants regulating selective binding of autophagy adapters and receptors to ATG8 proteins.
Creators: name: Wirth, Martina
name: Wenxin Zhang
name: Razi, Minoo
name: Lynet Nyoni
name: Dhira Joshi
name: O'Reilly, Nicola
name: Johansen, Terje
name: Tooze, Sharon A
name: Mouilleron, Stéphane
Publisher: name: The Francis Crick Institute
Year: 2020
Subjects: Model organisms
Biochemistry & Proteomics
Imaging
Signalling & Oncogenes
Structural Biology & Biophysics
Cell Biology
Chemical Biology & High Throughput

description: Autophagy is an essential recycling and quality control pathway. Mammalian ATG8 proteins drive autophagosome formation and selective removal of protein aggregates and organelles by recruiting autophagy receptors and adaptors that contain a LC3-interacting region (LIR) motif. LIR motifs can be highly selective for ATG8 subfamily proteins (LC3s/GABARAPs), however the molecular determinants regulating these selective interactions remain elusive. Here we show that residues within the core LIR motif and adjacent C-terminal region as well as ATG8 subfamily-specific residues in the LIR docking site are critical for binding of receptors and adaptors to GABARAPs. Moreover, rendering GABARAP more LC3B-like impairs autophagy receptor degradation. Modulating LIR binding specificity of the centriolar satellite protein PCM1, implicated in autophagy and centrosomal function, alters its dynamics in cells. Our data provides new mechanistic insight into how selective binding of LIR motifs to GABARAPs is achieved, and elucidate the overlapping and distinct functions of ATG8 subfamily proteins.
Improved measurements of $χ_{cJ} \rightarrow Σ^+ \barΣ^-$ and $Σ^0 \barΣ^0$ decays
Creators: name: BESIII Collaboration
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: Using a data sample of $(448.1\pm2.9)\times 10^6~ψ(3686)$ events collected with the BESIII detector at the BEPCII collider, we present measurements of branching fractions for the decays $χ_{cJ} \rightarrow Σ^+ \barΣ^-$ and $Σ^0 \barΣ^0$. The decays $χ_{c1,2}\rightarrow Σ^+ \barΣ^-$ and $Σ^0 \barΣ^0$ are observed for the first time, and the branching fractions for $χ_{c0}\rightarrow Σ^+ \barΣ^-$ and $Σ^0 \barΣ^0$ decays are measured with improved precision. The branching fraction ratios between the charged and neutral modes are consistent with the prediction of isospin symmetry.
description: 9 pages, 4 figures; Accepted by PRD
Free-bound emission from cosmological hydrogen recombination
Creators: name: Chluba, J.
name: Sunyaev, R. A.
Publisher: name: arXiv
Year: 2006
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: In this paper we compute the emission coming from the direct recombination of free electrons to a given shell (n>=2) during the epoch of cosmological hydrogen recombination. This contribution leads to a total of one photon per recombined hydrogen atom and therefore a ~30-88% increase of the recombination spectrum within the frequency range 1 GHz<=nu<=100 GHz. In particular the Balmer-continuum emission increases the distortion at nu~ 690 GHz by ~92%. With our 100 shell calculations for the hydrogen atom we find that a total of ~5 photons per hydrogen atom are emitted when including all the bound-bound transitions, the 2s two-photon decay channel and the optically thin free-bound transitions. Since the direct recombination continuum at high n is very broad only a few n-series continuua are distinguishable and most of this additional emission below nu
description: 4 pages, 2 figures, submitted to A&A Letters
title: 02_1360
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees.
Creators: name: Stolzer, Maureen
name: Lai, Han
name: Minli  Xu
name: Sathaye, Deepa
name: Vernot, Benjamin
name: Durand, Dannie
Publisher: name: Carnegie Mellon University
Year: 2012
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: MOTIVATION: Gene duplication (D), transfer (T), loss (L) and incomplete lineage sorting (I) are crucial to the evolution of gene families and the emergence of novel functions. The history of these events can be inferred via comparison of gene and species trees, a process called reconciliation, yet current reconciliation algorithms model only a subset of these evolutionary processes. RESULTS: We present an algorithm to reconcile a binary gene tree with a nonbinary species tree under a DTLI parsimony criterion. This is the first reconciliation algorithm to capture all four evolutionary processes driving tree incongruence and the first to reconcile non-binary species trees with a transfer model. Our algorithm infers all optimal solutions and reports complete, temporally feasible event histories, giving the gene and species lineages in which each event occurred. It is fixed-parameter tractable, with polytime complexity when the maximum species outdegree is fixed. Application of our algorithms to prokaryotic and eukaryotic data show that use of an incomplete event model has substantial impact on the events inferred and resulting biological conclusions. AVAILABILITY: Our algorithms have been implemented in Notung, a freely available phylogenetic reconciliation software package, available at http://www.cs.cmu.edu/~durand/Notung. CONTACT: mstolzer@andrew.cmu.edu.
Oryctanthus occidentalis Eichler
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Santalales
Loranthaceae
Oryctanthus
Oryctanthus occidentalis

description: Loranthus occidentalis Linnaeus, Systema Naturae, ed. 10, 2: 988. 1759.
["Habitat in Americae arboribus."] Sp. Pl., ed. 2, 1: 473 (1762). RCN: 2562.
Type not designated.
Original material: [icon] in Sloane, Voy. Jamaica 2: 92, t. 200, f. 2. 1725 - Voucher: Herb. Sloane 6: 108 (BM-SL).
 Current name: Oryctanthus occidentalis (L.) Eichler (Loranthaceae).
 Note: Kuijt (in Bot. Jahrb. Syst. 95: 521. 1976) wrongly treated material in Herb. Sloane (6: 108, BM-SL) as the holotype, but this was not studied by Linnaeus and is not original material for the name.
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part L), pp. 610-650 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 641, DOI: 10.5281/zenodo.291971
Epidermal autophagy and beclin 1 regulator 1 and loricrin: a paradigm shift in the prognostication and stratification of the American Joint Committee on Cancer stage I melanomas
Creators: name: R Ellis
name: D Tang
name: B Nasr
name: A Greenwood
name: A McConnell
name: ME Anagnostou
name: M Elias
name: S Verykiou
name: D Bajwa
name: T Ewen
name: NJ Reynolds
name: P Barrett
name: E Carling
name: G Watson
name: J Armstrong
name: AJ Allen
name: S Horswell
name: M Labus
name: PE Lovat
Publisher: name: The Francis Crick Institute
Year: 2020
Subjects: Genetics & Genomics
Chemical Biology & High Throughput
Genome Integrity & Repair
Tumour Biology
Computational & Systems Biology

description: BACKGROUND: Despite the recent update to the AJCC staging criteria for melanoma, this system is still unable to identify truly high-risk stage I tumour subsets. OBJECTIVE: To determine clinical utility of combined epidermal AMBRA1/Loricrin (AMLo) expression as a prognostic biomarker for AJCC stage I cutaneous melanoma. METHODS: Peri-tumoural AMBRA1 expression was evaluated in a retrospective discovery cohort of 76 AJCC I melanomas. Multivariate analysis of AMLo expression was subsequently correlated with clinical outcomes up to 12-years in two independent powered, retrospective validation and qualification cohorts comprising of 379 AJCC I melanomas. RESULTS: Decreased AMBRA1 expression in the epidermis overlying primary melanomas in a discovery cohort of 76 AJCC I tumours was associated with 81.5% 7-year DFS versus 100% survival with maintained AMBRA1; P<0.081. Following automated IHC protocol development for semi-quantitative analysis of AMLo further analysis was undertaken in validation (n=218) and qualification cohorts (n=161) of AJCC I melanomas. Combined cohort analysis revealed a DFS of 98.3% in the AMLo low-risk group (n=239) versus 85.45% in the AMLo high-risk cohort (n=140, P<0.001). Sub-cohort, multivariate analysis revealed the AMLo hazard ratio of 4.04 ((95% CI 1.69-9.66) P = 0.002), is a stronger predictor of DFS than Breslow depth (multivariate analysis 2.97 (95% CI 0.93-9.56) P = 0.068) in AJCC stage IB patients. CONCLUSIONS: Loss of AMLo expression in the epidermis overlying primary AJCC stage I melanomas identifies high risk tumour subsets independently of Breslow depth and represents a major paradigm shift in future prognostic assessment and stratification of primary melanomas. This article is protected by copyright. All rights reserved.
Spectral determinants for twist field correlators
Creators: name: Belitsky, A. V.
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Twist fields were introduced a few decades ago as a quantum counterpart to classical kink configurations and disorder variables in low dimensional field theories. In recent years they received a new incarnation within the framework of geometric entropy and strong coupling limit of four-dimensional scattering amplitudes. In this paper, we study their two-point correlation functions in a free massless scalar theory, namely, twist--twist and twist--anti-twist correlators. In spite of the simplicity of the model in question, the properties of the latter are far from being trivial. The problem is reduced, within the formalism of the path integral, to the study of spectral determinants on surfaces with conical points, which are then computed exactly making use of the zeta function regularization. We also provide an insight into twist correlators for a massive complex scalar by means of the Lifshitz-Krein trace formula.
description: 21 pages, 2 figures
Four-fermion production at gamma gamma colliders: 2. Radiative corrections in double-pole approximation
Creators: name: Bredenstein, A.
name: Dittmaier, S.
name: Roth, M.
Publisher: name: arXiv
Year: 2005
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The O(alpha) electroweak radiative corrections to gamma gamma --> WW --> 4f within the electroweak Standard Model are calculated in double-pole approximation (DPA). Virtual corrections are treated in DPA, leading to a classification into factorizable and non-factorizable contributions, and real-photonic corrections are based on complete lowest-order matrix elements for gamma gamma --> 4f + gamma. Soft and collinear singularities appearing in the virtual and real corrections are combined alternatively in two different ways, namely by using the dipole subtraction method or by applying phase-space slicing. The radiative corrections are implemented in a Monte Carlo generator called COFFERgammagamma, which optionally includes anomalous triple and quartic gauge-boson couplings in addition and performs a convolution over realistic spectra of the photon beams. A detailed survey of numerical results comprises O(alpha) corrections to integrated cross sections as well as to angular, energy, and invariant-mass distributions. Particular attention is paid to the issue of collinear-safety in the observables.
description: 42 pages, latex, 34 postscript figures
Inference of tumor phylogenies from genomic assays on heterogeneous samples.
Creators: name: Ayshwarya  Subramanian
name: Shackney, Stanley E.
name: Schwartz, Russell
Publisher: name: Carnegie Mellon University
Year: 2012
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Tumorigenesis can in principle result from many combinations of mutations, but only a few roughly equivalent sequences of mutations, or "progression pathways," seem to account for most human tumors. Phylogenetics provides a promising way to identify common progression pathways and markers of those pathways. This approach, however, can be confounded by the high heterogeneity within and between tumors, which makes it difficult to identify conserved progression stages or organize them into robust progression pathways. To tackle this problem, we previously developed methods for inferring progression stages from heterogeneous tumor profiles through computational unmixing. In this paper, we develop a novel pipeline for building trees of tumor evolution from the unmixed tumor data. The pipeline implements a statistical approach for identifying robust progression markers from unmixed tumor data and calling those markers in inferred cell states. The result is a set of phylogenetic characters and their assignments in progression states to which we apply maximum parsimony phylogenetic inference to infer tumor progression pathways. We demonstrate the full pipeline on simulated and real comparative genomic hybridization (CGH) data, validating its effectiveness and making novel predictions of major progression pathways and ancestral cell states in breast cancers.
Dendrophthoe pentandra Miq.
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Santalales
Loranthaceae
Dendrophthoe
Dendrophthoe pentandra

description: Loranthus pentandrus Linnaeus, Systema Naturae, ed. 12, 2: 252; Mantissa Plantarum: 63. 1767.
"Habitat in India." RCN: 2565.
 Lectotype (Danser, Bull. Jard. Bot. Buitenzorg, sér. 3, 11: 419. 1931): Herb. Linn. No. 455.7 (LINN).
 Current name: Dendrophthoe pentandra (L.) Miq. (Loranthaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part L), pp. 610-650 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 641, DOI: 10.5281/zenodo.291971
The isomorphism problem of projective schemes and related algorithmic problems
Creators: name: Yasuda, Takehiko
Publisher: name: arXiv
Year: 2021
Subjects: subject: Algebraic Geometry (math.AG)
subject: FOS: Mathematics
subject: 14Q15, 14Q10, 14Q05

description: We discuss the isomorphism problem of projective schemes; given two projective schemes, can we algorithmically decide whether they are isomorphic? We give affirmative answers in the case of one-dimensional projective schemes, the case of smooth irreducible varieties with a big canonical sheaf or a big anti-canonical sheaf, and the case of K3 surfaces with a finite automorphism group. As related algorithmic problems, we also discuss decidability of positivity properties of invertible sheaves, and approximation of the nef cone and the pseudo-effective cone.
description: 31 pages, v2: minor revision
Characterisation of class VI TRIM RING domains: linking RING activity to C-terminal domain identity.
Creators: name: Stevens, Rebecca V
name: Esposito, Diego
name: Rittinger, Katrin
Publisher: name: The Francis Crick Institute
Year: 2020
Subjects: subject: Biochemistry & Proteomics
subject: Signalling & Oncogenes
subject: Structural Biology & Biophysics
subject: Chemical Biology & High Throughput
subject: Infectious Disease
subject: Immunology
subject: FOS: Clinical medicine

description: TRIM E3 ubiquitin ligases regulate multiple cellular processes, and their dysfunction is linked to disease. They are characterised by a conserved N-terminal tripartite motif comprising a RING, B-box domains, and a coiled-coil region, with C-terminal domains often mediating substrate recruitment. TRIM proteins are grouped into 11 classes based on C-terminal domain identity. Class VI TRIMs, TRIM24, TRIM33, and TRIM28, have been described as transcriptional regulators, a function linked to their C-terminal plant homeodomain and bromodomain, and independent of their ubiquitination activity. It is unclear whether E3 ligase activity is regulated in family members where the C-terminal domains function independently. Here, we provide a detailed biochemical characterisation of the RING domains of class VI TRIMs and describe the solution structure of the TRIM28 RING. Our study reveals a lack of activity of the isolated RING domains, which may be linked to the absence of self-association. We propose that class VI TRIMs exist in an inactive state and require additional regulatory events to stimulate E3 ligase activity, ensuring that associated chromatin-remodelling factors are not injudiciously degraded.
Dynamics of Deformable Active Particles under External Flow Field
Creators: name: Tarama, Mitsusuke
Publisher: name: arXiv
Year: 2017
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: In most practical situations, active particles are affected by their environment, for example, by a chemical concentration gradient, light intensity, gravity, or confinement. In particular, the effect of an external flow field is important for particles swimming in a solvent fluid. For deformable active particles such as self-propelled liquid droplets and active vesicles, as well as microorganisms such as euglenas and neutrophils, a general description has been developed by focusing on shape deformation. In this review, we present our recent studies concerning the dynamics of a single active deformable particle under an external flow field. First, a set of model equations of active deformable particles including the effect of a general external flow is introduced. Then, the dynamics under two specific flow profiles is discussed: a linear shear flow, as the simplest example, and a swirl flow. In the latter case, the scattering dynamics of the active deformable particles by the swirl flow is also considered.
description: 10 pages, 6 figures, to be published in J. Phys. Soc. Jpn
Enhanced density and magnetic fields in interstellar OH masers
Creators: name: Fish, Vincent L.
name: Reid, Mark J.
name: Menten, Karl M.
name: Pillai, Thushara
Publisher: name: arXiv
Year: 2006
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Aims: We have observed the 6030 and 6035 MHz transitions of OH in high-mass star-forming regions to obtain magnetic field estimates in both maser emission and absorption. Methods: Observations were taken with the Effelsberg 100 m telescope. Results: Our observations are consistent with previous results, although we do detect a new 6030 MHz maser feature near -70 km/s in the vicinity of W3(OH). In absorption we obtain a possible estimate of -1.1 +/- 0.3 mG for the average line-of-sight component of the magnetic field in the absorbing OH gas in K3-50 and submilligauss upper limits for the line-of-sight field strength in DR 21 and W3. Conclusions: These results indicate that the magnetic field strength in the vicinity of OH masers is higher than that of the surrounding, non-masing material, which in turn suggests that the density of masing OH regions is higher than that of their surroundings.
description: 19 pages including online material, accepted to A&A
Chance Constrained Economic Dispatch Considering the Capability of Network Flexibility Against Renewable Uncertainties
Creators: name: Song, Yue
name: Liu, Tao
name: Hill, David J.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Systems and Control (eess.SY)
subject: Optimization and Control (math.OC)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Mathematics

description: This paper incorporates a continuous-type network flexibility into chance constrained economic dispatch (CCED). In the proposed model, both power generations and line susceptances are continuous variables to minimize the expected generation cost and guarantee a low probability of constraint violation in terms of generations and line flows under renewable uncertainties. From the analytical form of CCED, we figure out the mechanism of network flexibility against uncertainties -- while renewable uncertainties shrink the usable line capacities and aggravate transmission congestion, network flexibility mitigates congestion by re-routing the base-case line flows and reducing the line capacity shrinkage caused by uncertainties. Further, we propose an alternate iteration solver for this problem. By duality theory, we set up a master problem in the form of second-order cone programming to optimize generation dispatch scheme and a subproblem in the form of linear programming to optimize line susceptances. A satisfactory solution can be obtained efficiently by alternately solving these two problems. The proposed method applies to both Gaussian uncertainty and non-Gaussian uncertainty by means of Gaussian mixture model. The case studies on the IEEE 14-bus system and IEEE 118-bus system suggest that network flexibility can significantly improve operational economy while ensuring security under uncertainties.
description: 12 pages, 8 figures
Topological recursion and uncoupled BPS structures II: Voros symbols and the $τ$-function
Creators: name: Iwaki, Kohei
name: Kidwai, Omar
Publisher: name: arXiv
Year: 2021
Subjects: subject: Mathematical Physics (math-ph)
subject: High Energy Physics - Theory (hep-th)
subject: Algebraic Geometry (math.AG)
subject: Classical Analysis and ODEs (math.CA)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: We continue our study of the correspondence between BPS structures and topological recursion in the uncoupled case, this time from the viewpoint of quantum curves. For spectral curves of hypergeometric type, we show the Borel-resummed Voros symbols of the corresponding quantum curves solve Bridgeland's "BPS Riemann-Hilbert problem". In particular, they satisfy the required jump property in agreement with the generalized definition of BPS indices $Ω$ in our previous work. Furthermore, we observe the Voros coefficients define a closed one-form on the parameter space, and show that (log of) Bridgeland's $τ$-function encoding the solution is none other than the corresponding potential, up to a constant. When the quantization parameter is set to a special value, this agrees with the Borel sum of the topological recursion partition function $Z_{\rm TR}$, up to a simple factor.
description: v2: minor fixes, journal version
Scurrula parasitica Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Santalales
Loranthaceae
Scurrula
Scurrula parasitica

description: Loranthus scurrula Linnaeus, Species Plantarum, ed. 2, 1: 472. 1762, nom. illeg.
"Habitat in China." RCN: 2558.
 Replaced synonym: Scurrula parasitica L. (1753).
 Lectotype (Barlow in Kalkman & al., Fl. Malesiana, ser. I, 13: 387. 1997): Herb. Linn. No. 455.1 (LINN).
 Current name: Scurrula parasitica L. (Loranthaceae).
 Note: A superfluous name for Scurrula parasitica L. (1753).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part L), pp. 610-650 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 641, DOI: 10.5281/zenodo.291971