cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Chroococcus subviolaceus
Creators: name: Jr, Watson Arantes Gama
name: Iv, Haywood Dail Laughinghouse
name: Sant'Anna, Célia Leite
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Bacteria
Cyanobacteria
Cyanophyceae
Chroococcales
Chroococcaceae
Chroococcus
Chroococcus subviolaceus

description: Chroococcus subviolaceus (Wille) Gama-Jr., Laughinghouse IV & Sant’Anna, comb. et stat. nov. (Figs. 4J–4L).
 Basionym:  Chroococcus turgidus var. subviolaceus  Wille in Hedwigia 53: 144. 1913.
Elliptical to irregular colonies, 13.0–48.0 µm diam., 2–4–8–16 celled, rarely more. Sheath firm, hyaline, conspicuous, slightly or non-lamellate, smooth. Cells ellipsoid, hemispherical to polygonal, (6.1)7.2–10.4(17.1) µm diam. Cell content homogeneous to granulated, brown-purple to purple.
 Habitat: —Rocks near a waterfall and concrete.
 Notes: — Chroococcus turgidus var. subviolaceus Wille (1913: 144) was first found growing on rocks, among Plectonema and Tolypothrix trichomes, in Samoa (Wille 1914). The features differing this variety from C. turgidus (Kützing 1846: 5) Nägeli (1849: 46) are the purple cell content, epiphytic habitat, non-lamellate sheath, and the smaller cell diameter. These characteristics are sufficient to classify Chroococcus turgidus var. subviolaceus as a separate species from C. turgidus. According to the Atlantic Rainforest material, we suspect that C. subviolaceus is very common in tropical terrestrial habitats of humid forests. Komárek & Anagnostidis (1998) considered this variety a synonym of Chroococcus westii Boye-Petersen (1923: 263). However, this species was first described in small Iceland lakes, and besides the habitat, Boye-Petersen (1923) mentioned that C. westii is quite different from C. turgidus var. subviolaceus by its larger cell diameter and by the sheaths being distinctly lamellate. We are not in agreement with the proposal by Komárek & Anagnostidis (1998) and propose the new status of this variety.
 Studied material: — BRAZIL. São Paulo: Peruíbe, Ecological Station “Juréia-Itatins”, 24° 23.737’ S, 47° 0.699’ W, 16 August 2011, W.A. Gama-Jr., G.S. Hentschke, C.F.S. Malone & C.L. Sant’Anna (SP 427320); 24° 22.694’ S, 47° 4.793’ W, 16 August 2011, W.A. Gama-Jr., G.S. Hentschke, C.F.S. Malone & C.L. Sant’Anna (SP 427321); 24° 22.685’ S, 47° 4.797’ W, 16 August 2011, W.A. Gama-Jr., G.S. Hentschke, C.F.S. Malone & C.L. Sant’Anna (SP 427322); 24° 23.013’ S, 47° 4.836’ W, 17 August 2011, W.A. Gama-Jr., G.S. Hentschke, C.F.S. Malone & C.L. Sant’Anna (SP 427324); 24° 23.708’ S, 47° 7.324’ W, 17 August 2011, W.A. Gama-Jr., G.S. Hentschke, C.F.S. Malone & C.L. Sant’Anna (SP 427330); 24° 22.739’ S, 47° 4.719’ W, W.A. Gama-Jr., G.S. Hentschke, C.F.S. Malone & C.L. Sant’Anna (SP 427333).
description: Published as part of Jr, Watson Arantes Gama, Iv, Haywood Dail Laughinghouse & Sant'Anna, Célia Leite, 2014, How diverse are coccoid cyanobacteria? A case study of terrestrial habitats from the Atlantic Rainforest (São Paulo, Brazil), pp. 61-97 in Phytotaxa 178 (2) on pages 69-70, DOI: 10.11646/phytotaxa.178.2.1, http://zenodo.org/record/5145178
Gloeocapsa compacta Kutzing 1845
Creators: name: Jr, Watson Arantes Gama
name: Iv, Haywood Dail Laughinghouse
name: Sant'Anna, Célia Leite
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Bacteria
Cyanobacteria
Cyanophyceae
Chroococcales
Chroococcaceae
Gloeocapsa
Gloeocapsa compacta

description: Gloeocapsa compacta Kützing (1845: 24) (Figs. 8I – 9A)
Round, elliptical to irregular colonies, 7.3–168.8 µm diam., 2–4–8 celled, rarely more. Sheath firm in outer layer, diffluent in inner, brown to purple, conspicuous, rarely lamellate, smooth to slightly granulated. Cells spherical to hemispherical, 4.3–5.4 µm diam. Cell content homogenous to sparsely granulated, blue-green. Spores dark orange, solitary or in groups after released, 3.3–4.0 µm diam.
 Habitat: —Tree bark and dry rocks.
 Studied material: — BRAZIL. São Paulo: Cananéia, “Recanto do Mar” Inn, 25º 1’ 16” S, 47º 55’ 31” W, 30 June 2010, W.A. Gama-Jr. & C.F.S. Malone (SP 401447); Peruíbe, Ecological Station “Juréia-Itatins”, 24° 23.018’ S, 47° 4.847’ W, 17 August 2011, W.A. Gama-Jr., G.S. Hentschke, C.F.S. Malone & C.L. Sant’Anna (SP 427326).
description: Published as part of Jr, Watson Arantes Gama, Iv, Haywood Dail Laughinghouse & Sant'Anna, Célia Leite, 2014, How diverse are coccoid cyanobacteria? A case study of terrestrial habitats from the Atlantic Rainforest (São Paulo, Brazil), pp. 61-97 in Phytotaxa 178 (2) on page 78, DOI: 10.11646/phytotaxa.178.2.1, http://zenodo.org/record/5145178
Bogoliubov excitations in the quasiperiodic kicked rotor: stability of a kicked condensate and the quasi-insulator-metal transition
Creators: name: Vermersch, Benoit
name: Delande, Dominique
name: Garreau, Jean Claude
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Chaotic Dynamics (nlin.CD)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We study the dynamics of a Bose-Einstein condensate in the quasiperiodic kicked rotor described by a Gross-Pitaevskii equation with periodic boundary conditions. As the interactions are increased, Bogoliubov excitations appear and deplete the condensate; we characterize this instability by considering the population of the first Bogoliubov mode, and show that it does not prevent, for small enough interaction strengths, the observation of the transition. However, the predicted subdiffusive behavior is not observed in the stable region. For higher interaction strengths, the condensate may be strongly depleted before this dynamical regimes set in.
description: 7 pages, 4 figures. arXiv admin note: substantial text overlap with arXiv:1410.2587
Image polaritons in boron nitride for extreme polariton confinement with low losses
Creators: name: Lee, In-Ho
name: He, Mingze
name: Zhang, Xi
name: Luo, Yujie
name: Liu, Song
name: Edgar, James H.
name: Wang, Ke
name: Avouris, Phaedon
name: Low, Tony
name: Caldwell, Joshua D.
name: Oh, Sang-Hyun
Publisher: name: arXiv
Year: 2020
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: Polaritons in two-dimensional materials provide extreme light confinement that is difficult to achieve with metal plasmonics. However, such tight confinement inevitably increases optical losses through various damping channels. Here we demonstrate that hyperbolic phonon polaritons in hexagonal boron nitride can overcome this fundamental trade-off. Among two observed polariton modes, featuring a symmetric and antisymmetric charge distribution, the latter exhibits lower optical losses and tighter polariton confinement. Far-field excitation and detection of this high-momenta mode becomes possible with our resonator design that can boost the coupling efficiency via virtual polariton modes with image charges that we dub image polaritons. Using these image polaritons, we experimentally observe a record-high effective index of up to 132 and quality factors as high as 501. Further, our phenomenological theory suggests an important role of hyperbolic surface scattering in the damping process of hyperbolic phonon polaritons.
MOESM3 of Venomics of the ectoparasitoid wasp Bracon nigricans
Creators: name: Becchimanzi, Andrea
name: Avolio, Maddalena
name: Bostan, Hamed
name: Colantuono, Chiara
name: Cozzolino, Flora
name: Mancini, Donato
name: Chiusano, Maria
name: Pucci, Pietro
name: Caccia, Silvia
name: Pennacchio, Francesco
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Space Science
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Inorganic Chemistry

description: Additional file 3: Table S2. Venom proteome annotated by BLAST search
Scale Invariance and Nonlinear Patterns of Human Activity
Creators: name: Hu, Kun
name: Ivanov, Plamen Ch.
name: Chen, Zhi
name: Hilton, Michael F.
name: Stanley, H. Eugene
name: Shea, Steven A.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Biological Physics (physics.bio-ph)
subject: Data Analysis, Statistics and Probability (physics.data-an)
subject: Quantitative Methods (q-bio.QM)
subject: FOS: Physical sciences
subject: FOS: Biological sciences

description: We investigate if known extrinsic and intrinsic factors fully account for the complex features observed in recordings of human activity as measured from forearm motion in subjects undergoing their regular daily routine. We demonstrate that the apparently random forearm motion possesses previously unrecognized dynamic patterns characterized by fractal and nonlinear dynamics. These patterns are unaffected by changes in the average activity level, and persist when the same subjects undergo time-isolation laboratory experiments designed to account for the circadian phase and to control the known extrinsic factors. We attribute these patterns to a novel intrinsic multi-scale dynamic regulation of human activity.
description: 4 pages, three figures
Heinrich Nissen and the Orientation of the Templum
Creators: name: Sparavigna, Amelia Carolina
Publisher: name: Zenodo
Year: 2021
Subjects: Archaeoastronomy
Roman Colonies
Day of the foundation
Heinrich Nissen
Ferdinando Castagnoli
Giulio De Petra

description: Of Heinrich Nissen, Clive Ruggles tells that he "deserves more than anyone else to be recognized as the earliest pioneer of modern archaeoastronomy". In fact, the German professor of ancient history studied the orientations of Egyptian and Greek temples and the orientations of churches too. However, Nissen is rarely mentioned in accounts of the early development of ideas and methods for archaeoastronomy. The aim of my contribution is to remedy the fact that Heinrich Nissen is not given due consideration and properly appreciated. I discuss in particular his Das Templum, where we can find his thought that the decumani of the towns were oriented to sunrise on the foundation day. He proposed to compare sunrise and decumanus azimuths to find this day. Moreover he linked it to Roman festivals. Some literature, where Nissen's thought has been discussed in the past, is also given.
Integrated Pest Management in Rice: Integrating Economics, Extension and Policy
Creators: name: Martin, John
name: Martin, John
Publisher: name: Unknown
Year: 1988
Subjects: Agricultural and Food Policy
Crop Production/Industries
Teaching/Communication/Extension/Profession

description: Since 1980, a project on integrated pest management in rice has been operating in seven countries of the South/South East ASian Region through the Food and Agriculture Organisation. Austral1a has been an instigator and act1 va finanOial '\nd technical supporter of the project. An important part of the program has been the management of brown plant hopper (SPH). This insect has become a major pest of rice only since the introduction of intensified rice cropping systems and the reduction in BPR predator populations through the overuse of broad spectrum pesticides. Initially the project was directed towards conf1rm1ng the underlying technical base of IPM. However in recent times, the focus has nhifted towards extension, to give the farmer practical tools which will enable him to more effectively manage pest problems in the rice crop. This sh1ft has highlighted the need for a deeper understanding of soc10 economic factors affecting farmer adoption of the technology, and the policies necessary'to susta1n an IPM approach. Recent policy changes in a number of parti~tpating countries including reducing insecticide imports and subsidies h1ghlight the importance of policy measures. IPM needs to be profitable at farmer level for the short and long term f;;.ational econom1c benefits which flow from IPM to be realised. Paper
Measuring the Quality of Explanations: The System Causability Scale (SCS). Comparing Human and Machine Explanations
Creators: name: Holzinger, Andreas
name: Carrington, André
name: Müller, Heimo
Publisher: name: arXiv
Year: 2019
Subjects: subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: Recent success in Artificial Intelligence (AI) and Machine Learning (ML) allow problem solving automatically without any human intervention. Autonomous approaches can be very convenient. However, in certain domains, e.g., in the medical domain, it is necessary to enable a domain expert to understand, why an algorithm came up with a certain result. Consequently, the field of Explainable AI (xAI) rapidly gained interest worldwide in various domains, particularly in medicine. Explainable AI studies transparency and traceability of opaque AI/ML and there are already a huge variety of methods. For example with layer-wise relevance propagation relevant parts of inputs to, and representations in, a neural network which caused a result, can be highlighted. This is a first important step to ensure that end users, e.g., medical professionals, assume responsibility for decision making with AI/ML and of interest to professionals and regulators. Interactive ML adds the component of human expertise to AI/ML processes by enabling them to re-enact and retrace AI/ML results, e.g. let them check it for plausibility. This requires new human-AI interfaces for explainable AI. In order to build effective and efficient interactive human-AI interfaces we have to deal with the question of how to evaluate the quality of explanations given by an explainable AI system. In this paper we introduce our System Causability Scale (SCS) to measure the quality of explanations. It is based on our notion of Causability (Holzinger et al., 2019) combined with concepts adapted from a widely accepted usability scale.
description: 6 pages, 1 figure, 1 table, will appear in Springer/Nature KI - K\"unstliche Intelligenz (2020), Volume 34, Issue 2
The Quantum Cosmological Wavefunction at Very Early Times for a Quadratic Gravity Theory
Creators: name: Davis, Simon
Publisher: name: arXiv
Year: 2003
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: The quantum cosmological wavefunction for a quadratic gravity theory derived from the heterotic string effective action is obtained near the inflationary epoch and during the initial Planck era. Neglecting derivatives with respect to the scalar field, the wavefunction would satisfy a third-order differential equation near the inflationary epoch which has a solution that is singular in the scale factor limit $a(t)\to 0$. When scalar field derivatives are included, a sixth-order differential equation is obtained for the wavefunction and the solution by Mellin transform is regular in the $a\to 0$ limit. It follows that inclusion of the scalar field in the quadratic gravity action is necessary for consistency of the quantum cosmology of the theory at very early times.
description: Tex, 13 pages
Two-loop HTL Thermodynamics with Quarks
Creators: name: Andersen, Jens O.
name: Petitgirard, Emmanuel
name: Strickland, Michael
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We calculate the quark contribution to the free energy of a hot quark-gluon plasma to two-loop order using hard-thermal-loop (HTL) perturbation theory. All ultraviolet divergences can be absorbed into renormalizations of the vacuum energy and the HTL quark and gluon mass parameters. The quark and gluon HTL mass parameters are determined self-consistently by a variational prescription. Combining the quark contribution with the two-loop HTL perturbation theory free energy for pure-glue we obtain the total two-loop QCD free energy. Comparisons are made with lattice estimates of the free energy for N_f=2 and with exact numerical results obtained in the large-N_f limit.
description: 33 pages, 6 figures
Pushing the Boundaries of Open Science (Special STI and Marie Curie Library Seminar)
Creators: name: , Naim
Publisher: name: Zenodo
Year: 2021
Subjects: open science

description: CERN, the European Organization for Nuclear Research, is the world's largest high-energy physics laboratory. The frontier research conducted at CERN has long embodied the values that have more recently come to be defined at the Open Science movement, which describes research and development that is collaborative, transparent and reproducible and whose outputs are publicly available (EU, 2018). Indeed these values were enshrined in 1953 in CERN’s founding Convention, which states that “… the results of its experimental and theoretical work shall be published or otherwise made generally available,” providing the organization with an early Open Science manifesto. This presentation will provide an overview of CERN’s activities to increase the accessibility, reuse and reproducibility of research in high energy physics, with a particular focus on the SCOAP3 program, which has transitioned 90% of literature in the discipline to Open Access, and a range of additional services, particularly relating to Open Data (CERN Open Data, REANA, CAP and Zenodo).
description: Delivered online. Organized by the Abdus Salam International Center for Theoretical Physics
Curvaton Dynamics
Creators: name: Dimopoulos, Konstantinos
name: Lazarides, George
name: Lyth, David
name: de Austri, Roberto Ruiz
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: In contrast to the inflaton's case, the curvature perturbations due to the curvaton field depend strongly on the evolution of the curvaton before its decay. We study in detail the dynamics of the curvaton evolution during and after inflation. We consider that the flatness of the curvaton potential may be affected by supergravity corrections, which introduce an effective mass proportional to the Hubble parameter. We also consider that the curvaton potential may be dominated by a quartic or by a non-renormalizable term. We find analytic solutions for the curvaton's evolution for all these possibilities. In particular, we show that, in all the above cases, the curvaton's density ratio with respect to the background density of the Universe decreases. Therefore, it is necessary that the curvaton decays only after its potential becomes dominated by the quadratic term, which results in (Hubble damped) sinusoidal oscillations. In the case when a non-renormalizable term dominates the potential, we find a possible non-oscillatory attractor solution that threatens to erase the curvature perturbation spectrum. Finally, we study the effects of thermal corrections to the curvaton's potential and show that, if they ever dominate the effective mass, they lead to premature thermalization of the curvaton condensate. To avoid this danger, a stringent bound has to be imposed on the coupling of the curvaton to the thermal bath.
description: 24 pages, 3 Postscript figures, RevTeX
Towards quantum internet and non-local communication in position based qubits
Creators: name: Pomorski, Krzysztof
name: Staszewski, Robert Bogdan
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Non-local communication among position based qubits is described for the system of the quantum electromagnetic resonator entangled to two semiconductor electrostatic qubits via interaction between matter and radiation by Jaynes-Cummings tight-binding Hamiltonian. Principle of quantum communication between position dependent qubits is explained with usage of simplistic model. All stages of derivation are presented. The case of two semiconductor position-dependent qubits interacting with quantum electromagnetic cavity is discussed and general form of tight-binding Hamiltonian is derived with renormalized tight-binding coefficients. The obtained results bring foundation for the construction of quantum networks and prospect of quantum internet. The presented work brings the perspective of creation of quantum communication networks between electrostatic position based qubits that are implementable in semiconductor single electron devices and in particular in current CMOS technologies. The case of two capacitively interacting qubits biased to quantum electromagnetic cavity is also described.
description: 20 pages, 3 figures
title: Automatic Generation and Novel Validation of Patient-Specific, Anatomically Inclusive Scoliosis Models for Biomechanics-Informed Surgical Planning
Creators: name: Tapp, Austin
Publisher: name: Old Dominion University Libraries
Year: 2021

description: Scoliosis is an abnormal spinal curvature of greater than 10 degrees. Severe scoliotic deformities are addressed with highly invasive procedures: anterior or posterior spinal fusion approaches. This invasiveness is due, in part, to the constraints of current surgical planning, which utilizes computed tomography (CT) scans unable to discern spinal ligaments that are dissected to make the spine sufficiently compliant for correction. If localization of ligaments and soft tissues were achieved pre-operatively, corrective procedures could become safer and more efficient by using finite element (FE) biomechanical simulations to determine decreased incidences of ligament releases. This research aims to achieve ligament localization within CT scans by deforming computer-aided design (CAD) meshes that encompass vertebrae, intervertebral discs, ligaments, and other soft tissues to emulate patient-specific anatomy.
Additional file 1: of Unprecedented bacterial community richness in soybean nodules vary with cultivar and water status
Creators: name: Sharaf, Hazem
name: Rodrigues, Richard
name: Moon, Jinyoung
name: Zhang, Bo
name: Mills, Kerri
name: Williams, Mark
Publisher: name: figshare
Year: 2019
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Plant Biology

description: Figure S1. Taxonomic summary of the cumulative relative abundance of nodule bacterial communities. Figure S2. Rarefaction plots of the alpha diversities of each of the irrigation treatments based on nifH OTUs. Figure S3. Boxplot showing variability between the nine cultivars based on multivariate beta dispersions. Figure S4. Geographic distribution of the overall relative abundance of Bradyrhizobium species isolated from fields in soybean main growing regions in the USA. Figure S5. The scatter plot shows no clear relationship or trends between yield and the alpha diversities on the family rank (a–b) and the OTU level (c–d). Figure S6. The scatter plot shows weak to moderate relationship between yield and top 6 OTUs in both the bacterial communities based on the 16S rRNA gene (a–f) and the diazotroph population based on the nifH gene (g–l). Figure S7. Variation in microbial communities affects metabolism and nitrogen resource allocation in the nodules as predicted by PICRUSt. Figure S8. Boxplot shows nodule size variation along the nine cultivars. Table S1. List of significantly different metabolic pathways between soybean cultivars as predicted by PICRUSt. Table S2. Vector fitting R2 scores of the amino acids’ vectors on the NMDS of the amino acids profile. Significantly enriched amino acids in each treatment are highlighted in bold. Table S3. Weekly climate data summary from Kentland’s farm, obtained from the onsite weather station for the duration of growing season in 2014. Table S4. The response of the bulk soil water content to the irrigation, cultivar and their interaction as determined by a split-plot analysis of variance. Table S5. The response of stomatal conductance to the irrigation, cultivar and their interaction as determined by a split-plot analysis of variance. (PDF 893 kb)
A pseudo-planar, periodic-box formalism for modelling the outer evolution of structure in spherically expanding stellar winds
Creators: name: Runacres, M. C.
name: Owocki, S. P.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present an efficient technique to study the 1D evolution of instability-generated structure in winds of hot stars out to very large distances (more than 1000 stellar radii). This technique makes use of our previous finding that external forces play little role in the outer evolution of structure. Rather than evolving the entire wind, as is traditionally done, the technique focuses on a representative portion of the structure and follows it as it moves out with the flow. This requires the problem to be formulated in a moving reference frame. The lack of Galilean invariance of the spherical equations of hydrodynamics is circumvented by recasting them in a pseudo-planar form. By applying the technique to a number of problems we show that it is fast and accurate, and has considerable conceptual advantages. It is particularly useful to test the dependence of solutions on the Galilean frame in which they were obtained. As an illustration, we show that, in a one-dimensional approximation, the wind can remain structured out to distances of more than 1300 stellar radii from the central star.
description: submitted to Astronomy and Astrophysics, 12 pages, 13 figures
Adiabatic potentials and spectra of heavy hybrid mesons
Creators: name: Kalashnikova, Yu. S.
name: Kuzmenko, D. S.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: Using the QCD string approach the adiabatic potentials and spectra of b\bar b-hybrid mesons are calculated. The results are compared to lattice studies.
description: 7 pages, 2 figures, talk at the NPD-2002 Conference, December 2-6, ITEP, Moscow, one reference added
MOESM1 of Improving emergency obstetric referral systems in low and middle income countries: a qualitative study in a tertiary health facility in Ghana
Creators: name: Daniels, Anita
name: Abuosi, Aaron
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Cancer

description: Additional file 1. Interview guides.
MOESM1 of A systematic review reporting quality of radiomics research in neuro-oncology: toward clinical utility and quality improvement using high-dimensional imaging features
Creators: name: Park, Ji
name: Kim, Ho
name: Donghyun Kim
name: Park, Seo
name: Kim, Jung
name: Cho, Se
name: Kim, Jeong
Publisher: name: figshare
Year: 2020
Subjects: subject: Space Science
subject: Medicine
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Science Policy

description: Additional file 1: Table S1. The six key domains of the radiomics quality score.
Additional file 3 of Causal effects of serum lipid biomarkers on early age-related macular degeneration using Mendelian randomization
Creators: name: Li, Fen-Fen
name: Wang, Yuqin
name: Chen, Lishuang
name: Chen, Chong
name: Chen, Qi
name: Xiang, Lue
name: Rao, Feng-Qin
name: Shen, Li-Jun
name: Zheng, Qin-Xiang
name: Yi, Quanyong
name: Huang, Xiu-Feng
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Cell Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Computational Biology

description: Additional file 3. Supplemental figures.
Calyculogygas serrana Grings 2014, sp. nov.
Creators: name: Grings, Martin
name: Boldrini, Ilsi Iob
name: Knob, Alberto
name: Bordignon, Sérgio Augusto De Loreto
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Malvales
Malvaceae
Calyculogygas
Calyculogygas serrana

description: Calyculogygas serrana Grings, sp. nov. (Figure 1, 2, 4)
Calyculogyganti uruguayensi Krapovickas affinis, sed ab ea epicalice bracteis majoribus, facie externa nervis cum trichomatibus majoribus; facie abaxiali foliis trichomatibus sparsis, non tomentosa, habitu decumbenti vel scandenti, corollis, foliis et pedunculis plerumque majoribus, mericarpiis majoribus differt.
 TYPE:— BRAZIL. Rio Grande do Sul: Nova Petrópolis, Linha Imperial, Oppitzeck, 13 September 2013, M. Grings 1780 (holotype ICN!, isotypes CTES!, MO!, K!).
 Decumbent or scandent shrubs up to 4 m tall; sometimes with roots at the nodes; stems covered in sparse hirsute trichomes 2 mm long. Leaf blades 4.5–13.5 × 3.5–13 cm, triangular, 3–5-lobed, basally truncate or cordate, 5–7- nerved, crenate-dentate, both surfaces with sparse stellate trichomes; stipules falcate-lanceolate 4–6 × 1.5–2.5 mm with simple trichomes in the margins; petioles 5–7 cm long, with trichomes similar to those of the stems. Flowers solitary in the leaf axils, usually facing slightly downwards, peduncle up to 5.5 cm long, densely covered in 0.5 mm stellate trichomes, epicalyx bracts 3, ovate to oval-lanceolate, 1.2–1.6 × 0.7–1 cm, covered with bifid trichomes 1 mm long in the main nerves of the external surface, nerves salient and sometimes reddish, margins with bifid and simple trichomes, internal surface tomentose, covered in short trichomes; calyx 1 cm long, with 5 triangular lobes 6 mm long; corolla red-orange, petals 0.9–1.8 × 0.7–1.4 cm; staminal column 3–5 mm, free parts of stamens numerous, styles 11–13; carpels uniovulate. Fruit schizocarpic with 11–13 mericarps 3–3.5 × 3–3.5 mm, dorsally rugose and with salient lines in the lateral faces. Seeds glabrous, reniform.
 Calyculogygas serrana can be distinguished from Calyculogygas uruguayensis by characters presented in Table 1 and Figures 1, 2 and 3. Furthermore, the geographical distribution of the two species differs (Figure 4). The new species has a very restricted (endemic) range, occurring only in three neighboring municipalities in Serra Geral highland slopes (Brazilian Atlantic Rainforet biome). Conversely, Calyculogygas uruguayensis has a wider distribution, occurring in Uruguay and Brazil, in the latter in Rio Grande do Sul state (Pampa biome and Brazilian Atlantic Rainforest Biome), with one collection in Santa Catarina state (Brazilian Atlantic Rainforest Biome).
description: Published as part of Grings, Martin, Boldrini, Ilsi Iob, Knob, Alberto & Bordignon, Sérgio Augusto De Loreto, 2014, A new species of Calyculogygas (Malvaceae) from southern Brazil, pp. 43-49 in Phytotaxa 178 (1) on pages 43-44, DOI: 10.11646/phytotaxa.178.1.5, http://zenodo.org/record/5145058
title: Editoriale: Tracce Urbane
Creators: name: Tracce Urbane. Rivista Italiana Transdisciplinare di Studi Urbani
Publisher: name: Tracce Urbane. Rivista Italiana Transdisciplinare di Studi Urbani
Year: 2017

description: Tracce Urbane. Rivista Italiana Transdisciplinare di Studi Urbani, No 1 (2017): Abitare/Dwelling
Generalized Cross-Entropy Benchmarking for Random Circuits with Ergodicity
Creators: name: Cheng, Bin
name: Meng, Fei
name: Zhang, Zhi-Jiong
name: Yung, Man-Hong
Publisher: name: arXiv
Year: 2025
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Cross-entropy benchmarking is a central technique used to certify a quantum chip in recent experiments. To better understand its mathematical foundation and develop new benchmarking schemes, we introduce the concept of ergodicity to random circuit sampling and find that the Haar random quantum circuit satisfies an ergodicity condition -- the average of certain types of post-processing function over the output bit strings is close to the average over the unitary ensemble. For noiseless random circuits, we prove that the ergodicity holds for polynomials of degree $t$ with positive coefficients and when the random circuits form a unitary $2t$-design. For strong enough noise, the ergodicity condition is violated. This suggests that ergodicity is a property that can be exploited to certify a quantum chip. We formulate the deviation of ergodicity as a measure for quantum chip benchmarking and show that it can be used to estimate the circuit fidelity for global depolarizing noise and weakly correlated noise. For a quadratic post-processing function, our framework recovers Google's result on estimating the circuit fidelity via linear cross-entropy benchmarking (XEB), and we give a sufficient condition on the noise model characterizing when such estimation is valid. Our results establish an interesting connection between ergodicity and noise in random circuits and provide new insights into designing quantum benchmarking schemes.
description: 15 pages, 4 figures. Comments are welcome
Higher Dimensional Bell-Szekeres Metric
Creators: name: Gurses, M.
name: Ipekoglu, Y.
name: Karasu, A.
name: Senturk, C.
Publisher: name: arXiv
Year: 2003
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The collision of pure electromagnetic plane waves with collinear polarization in N-dimensional (N=2+n) Einstein-Maxwell theory is considered. A class of exact solutions for the higher dimensional Bell-Szekeres metric is obtained and its singularity structure is examined.
description: 5 pages, REVTeX4, no figures
Systematic review for the treatment of older rheumatoid arthritis patients informing the 2020 update of the Japan college of rheumatology clinical practice guidelines for the management of rheumatoid arthritis
Creators: name: Sugihara, Takahiko
name: Kawahito, Yutaka
name: Morinobu, Akio
name: Kaneko, Yuko
name: Seto, Yohei
name: Toshihisa Kojima
name: Hiromu Ito
name: Kohno, Masataka
name: Nakayama, Takeo
name: Yasumori Sobue
name: Nishida, Keiichiro
name: Matsushita, Isao
name: Murashima, Atsuko
name: Mori, Masaaki
name: Tanaka, Eiichi
name: Hirata, Shintaro
name: Kishimoto, Mitsumasa
name: Yamanaka, Hisashi
name: Kojima, Masayo
name: Harigai, Masayoshi
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Science Policy

description: To provide an evidence base for clinical practice guidelines (CPG) for the management of rheumatoid arthritis (RA) in older adults. PubMed, Cochrane library, and Japan Centra Revuo Medicina databases were searched for articles published between 1990 and 2019. Quality of the evidence was assessed using the Grading of Recommendations Assessment, Development and Evaluation system, with some modifications. Among 702 identified articles, there were 5 post-hoc analyses of randomized controlled trials and 10 observational studies. Meta-analysis of the former yielded a mean difference of the van der Heijde-modified total Sharp score of −2.79 (95% confidence interval [CI] − 3.74 to −1.84) for treatment with tumor necrosis factor inhibitors. The risk ratio (RR) for the American College of Rheumatology 50% response rate, and for serious adverse events was 2.83 (95%CI 1.90 to 4.21) and 1.32 (95%CI 0.53 to 3.31), respectively, for Janus kinase inhibitors. Meta-analysis of the observational studies yielded an RR for disease activity score-28 remission and serious infections of 0.76 (95%CI 0.64 to 0.91) and 1.92 (95%CI 1.31 to 2.81) for older-versus-younger patients receiving biological disease-modifying antirheumatic drugs, respectively. This systematic review provides the necessary evidence for developing CPG for the management of RA in older adults.
Validation and improvement of the ZPC parton cascade inside a box
Creators: name: Zhao, Xin-Li
name: Ma, Guo-Liang
name: Ma, Yu-Gang
name: Lin, Zi-Wei
Publisher: name: arXiv
Year: 2020
Subjects: subject: Nuclear Theory (nucl-th)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Cascade solutions of the Boltzmann equation suffer from causality violation at large densities and/or scattering cross sections. Although the particle subdivision technique can reduce the causality violation, it alters event-by-event correlations and fluctuations and is also computationally expensive. Here we evaluate and then improve the accuracy of the ZPC parton cascade for elastic scatterings inside a box without using parton subdivision. We first test different collision schemes for the collision times and ordering time and find that the default collision scheme does not accurately describe the equilibrium momentum distribution at large opacities. We then find a specific collision scheme that can describe very accurately the equilibrium momentum distribution as well as the time evolution towards equilibrium, even at large opacities. We also calculate the shear viscosity and the $η/s$ ratio of the parton systems and confirm that the new collision scheme is more accurate. In addition, we use a novel parton subdivision method to obtain the "exact" evolution of the system. This subdivision method is valid for such box calculations and is so much more efficient than the standard subdivision method that we use a subdivision factor of $10^6$ in this study.
description: 13 pages, 11 figures, 2 tables; added calculations of shear viscosity and eta/s ratio of the parton systems under study
The sensitivity of Southern Ocean biogeochemical cycles to vertical mixing
Creators: name: Ellison, Elizabeth
Publisher: name: Imperial College London
Year: 2023

description: The Southern Ocean (SO) plays a critical role in global overturning circulation and biogeochemical cycles, connecting the world’s major ocean basins and facilitating the upwelling of deep waters. Understanding the physical processes occurring in the SO is crucial to understand and model our climate system. While surface-intensified turbulent mixing significantly affects biogeochemical cycles, the importance of variations in the weaker background mixing below the mixed layer is generally overlooked. Background subsurface mixing rates in the SO vary greatly in space and time. The processes known to induce ocean background turbulence are typically not represented in models, and there is great uncertainty in the parameterisation of this mixing. This thesis investigates the sensitivity of biogeochemical tracers to altered SO diapycnal mixing. Firstly, we show that changes to SO mixing over a modest range alter Atlantic biogeochemical tracer distributions over short and long timescales. On annual to decadal timescales changes are dominated by the direct impact of changes in diapycnal mixing on tracer fluxes, while on centennial timescales they are dominated by the mixing-induced variations in the advective transport of the tracers by large-scale circulation. Secondly, we examine changes to SO biogeochemistry on sub-decadal timescales. We show that increasing the background mixing significantly alters SO air-sea CO2 fluxes and phytoplankton productivity. These could alter atmospheric CO2 concentration over longer timescales. Finally, when using our current best estimates of spatially varying SO diapycnal mixing rates, we find no reduction in the misfit between modelled and observed tracer concentrations compared to using a spatially homogeneous mixing profile. This work demonstrates the importance of accurately representing spatiotemporally variable local and non-local SO mixing processes. It is essential to simulate biogeochemical cycles on decadal timescales and to represent the indirect impact of mixing-induced changes to circulation on biogeochemical cycles on longer timescales.
Additional file 6 of Identification and analysis of lipid metabolism-related genes in allergic rhinitis
Creators: name: Tao, Qilei
name: Zhu, Yajing
name: Wang, Tianyu
name: Deng, Yue
name: Liu, Huanhai
name: Wu, Jian
Publisher: name: figshare
Year: 2023
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Mental Health
subject: Computational Biology

description: Supplementary Materials 6: SNAS Editing Certificate
title: Editoriale: Abitare
Creators: name: Tracce Urbane
Publisher: name: Tracce Urbane. Rivista Italiana Transdisciplinare di Studi Urbani
Year: 2017

description: Tracce Urbane. Rivista Italiana Transdisciplinare di Studi Urbani, No 1 (2017): Abitare/Dwelling
title: Città informale VS città progettata #1 intervista a Roberto De Angelis
Creators: name: Barberi, Paolo
name: De Angelis, Roberto
Publisher: name: Tracce Urbane. Rivista Italiana Transdisciplinare di Studi Urbani
Year: 2017

description: Tracce Urbane. Rivista Italiana Transdisciplinare di Studi Urbani, No 1 (2017): Abitare/Dwelling
title: Città informale VS città progettata #2 Intervista a Laura Fregolent
Creators: name: Ostanel, Elena
name: Fregolent, Laura
Publisher: name: Tracce Urbane. Rivista Italiana Transdisciplinare di Studi Urbani
Year: 2017

description: Tracce Urbane. Rivista Italiana Transdisciplinare di Studi Urbani, No 1 (2017): Abitare/Dwelling
The 2D Continuum Radiative Transfer Problem: Benchmark Results for Disk Configurations
Creators: name: Pascucci, I.
name: Wolf, S.
name: Steinacker, J.
name: Dullemond, C. P.
name: Henning, Th.
name: Niccolini, G.
name: Woitke, P.
name: Lopez, B.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present benchmark problems and solutions for the continuum radiative transfer (RT) in a 2D disk configuration. The reliability of three Monte-Carlo and two grid-based codes is tested by comparing their results for a set of well-defined cases which differ for optical depth and viewing angle. For all the configurations, the overall shape of the resulting temperature and spectral energy distribution is well reproduced. The solutions we provide can be used for the verification of other RT codes.We also point out the advantages and disadvantages of the various numerical techniques applied to solve the RT problem.
description: 13 pages, 10 figures, To appear in Astronomy and Astrophysics
MOESM1 of Impact of acyclovir use on survival of patients with ventilator-associated pneumonia and high load herpes simplex virus replication
Creators: name: Schuierer, Lukas
name: Gebhard, Michael
name: Hans-Georg Ruf
name: Jaschinski, Ulrich
name: Berghaus, Thomas
name: Wittmann, Michael
name: Braun, Georg
name: Busch, Dirk
name: Hoffmann, Reinhard
Publisher: name: figshare
Year: 2020
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 1: Figure S1. Time from imaging to PCR vs HSV viral load in all patients with infiltrates (n = 78). Figure S2. Type of obtaining respiratory secretions and viral load. Figure S3. Re-analysis of radiographic findings using the descriptive part of the LIS Score. Figure S4. Impact of concomitant cytomegalovirus (CMV) reactivation on survival in HSV patients. Table S1. a Microbiology culture results of the respiratory secretions. b Summary of antibiotic treatments during ICU stay. Table S2. Summary of harzard ratios for ICU death from different calculated COX regression models.
Non-Hermitian band topology and skin modes in active elastic media
Creators: name: Scheibner, Colin
name: Irvine, William T. M.
name: Vitelli, Vincenzo
Publisher: name: arXiv
Year: 2020
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: Solids built out of active components can exhibit non-reciprocal elastic coefficients that give rise to non-Hermitian wave phenomena. Here, we investigate non-Hermitian effects present at the boundary of two-dimensional active elastic media obeying two general assumptions: their microscopic forces conserve linear momentum and arise only from static deformations. Using continuum equations, we demonstrate the existence of the non-Hermitian skin effect in which the boundary hosts an extensive number of localized modes. Furthermore, lattice models reveal non-Hermitian topological transitions mediated by exceptional rings driven by the activity level of individual bonds.
description: Three figures with supplementary information
Construction of Two-Region Input-output Model - A Case Study of Henan Province
Creators: name: Shang, Yong
name: Shang, Yong
Publisher: name: Unknown
Year: 2012
Subjects: subject: Agribusiness
subject: Input-output model
subject: Location quotient
subject: MRIO model
subject: Industrial structure

description: On the basis of input-output table of Henan Province and China in 2007, this paper advances a simple method of constructing two-region input-output model using MRIO model, to research the economic link between the industries of Henan Province and the industries of other regions. I Summarize the characteristics of this method based on this as follows, when researching inter-regional economic link, the multi-region or two-region input-output model has prominent superiority, and we can conduct preliminary estimation on the multi-region input-output model using location quotient approach.
Situation Analysis of Developing ReBAM in Yanji City
Creators: name: Hu, Hao
name: Nan, Ying
name: Hu, Hao
name: Nan, Ying
Publisher: name: Unknown
Year: 2012
Subjects: subject: Agribusiness
subject: ReBAM
subject: SWOT analysis
subject: Frontier region
subject: Yanji City

description: The ratification and implementation of Cooperation and Development Planning Outline of Tumen River Region in China will have great significance to the frontier opening-up in the Northeast Asia Region of China, economic cooperation in sub-region of Tumen River, and the development of tourism in forerunner zone of “ Changchun-jijin-Tumen” . Yanji City is regarded as the fulcrum Chinese city in ' Golden Triangle of Northeast Asian economic zone, whose breakthrough and development in tourism and recreation is in face of new situation. Based on analyzing strength, weakness, opportunity and threat of development of ReBAM in Yanji City, our research further deepens the systematic understanding of development of ReBAM in Yanji City. And we get the conclusion that Yanji city should take me opportunity of cooperation and development of Tumen River Region in China on me basis of newly fledged ReBAM at present, to exploit the potential of market demand for ReBAM, and implement proactive growth-oriented strategy to further improve urban tourism structural system in Yanji City.