cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 2: of Na+/K+ Balance and Transport Regulatory Mechanisms in Weedy and Cultivated Rice (Oryza sativa L.) Under Salt Stress
Creators: name: Yuhua Zhang
name: Jiapeng Fang
name: Xibao Wu
name: Liyao Dong
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: Plant Biology
subject: Computational Biology

description: Figure S1. Comparison of amino acid change sites of ion transport related genes (HKT and NHX gene families and SOS1) between weedy rice genotype JYGY-1 and cultivated rice genotype Nipponbar. (W) stands for weedy rice genotype JYGY-1, and (R) stands for cultivated rice genotype Nipponbar (Except for the gene OsHKT2;2). Among them, the gene with the most amino acid change between weedy rice and rice is OsNHX4, as there are eight amino acid changes identified, followed by OsHKT2;2, OsHKT2;3, OsHKT2;4, OsHKT1;5, OsNHX2, OsHKT1;1, OsSOS1 and OsHKT1;4. And the homology of other genes not shown is 100%. (PDF 2709 kb)
Additional file 6 of PUFA-synthase-specific PPTase enhanced the polyunsaturated fatty acid biosynthesis via the polyketide synthase pathway in Aurantiochytrium
Creators: name: Wang, Sen
name: Lan, Chuanzeng
name: Wang, Zhuojun
name: Wan, Weijian
name: Cui, Qiu
name: Song, Xiaojin
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Additional file 6: Fig. S5. Genomic PCR detection.
On the Zero-Point Energy of a Conducting Spherical Shell
Creators: name: Esposito, Giampiero
name: Kamenshchik, Alexander Yu.
name: Kirsten, Klaus
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The zero-point energy of a conducting spherical shell is evaluated by imposing boundary conditions on the potential, and on the ghost fields. The scheme requires that temporal and tangential components of perturbations of the potential should vanish at the boundary, jointly with the gauge-averaging functional, first chosen of the Lorenz type. Gauge invariance of such boundary conditions is then obtained provided that the ghost fields vanish at the boundary. Normal and longitudinal modes of the potential obey an entangled system of eigenvalue equations, whose solution is a linear combination of Bessel functions under the above assumptions, and with the help of the Feynman choice for a dimensionless gauge parameter. Interestingly, ghost modes cancel exactly the contribution to the Casimir energy resulting from transverse and temporal modes of the potential, jointly with the decoupled normal mode of the potential. Moreover, normal and longitudinal components of the potential for the interior and the exterior problem give a result in complete agreement with the one first found by Boyer, who studied instead boundary conditions involving TE and TM modes of the electromagnetic field. The coupled eigenvalue equations for perturbative modes of the potential are also analyzed in the axial gauge, and for arbitrary values of the gauge parameter. The set of modes which contribute to the Casimir energy is then drastically changed, and comparison with the case of a flat boundary sheds some light on the key features of the Casimir energy in non-covariant gauges.
description: 29 pages, Revtex, revised version. In this last version, a new section has been added, devoted to the zero-point energy of a conducting spherical shell in the axial gauge. A second appendix has also been included
Generalized Parton Distributions of Pion for Non-Zero Skewness in AdS/QCD
Creators: name: Kaur, Navdeep
name: Kumar, Narinder
name: Mondal, Chandan
name: Dahiya, Harleen
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We study the generalized parton distributions (GPDs) of pion for non-zero skewness by considering the leading $| q \bar{q} \rangle$ Fock state component. Inspired from AdS/QCD light-front wave functions, we calculate the pion GPDs. By taking the Fourier transforms we obtain the results for impact-parameter dependent parton distribution functions (ipdpdf) and for GPDs in longitudinal boost-invariant space. We also calculate the charge density and gravitational form factor of the pion. The pion unpolarized transverse momentum distribution (TMD) have also been calculated. The results provide rich information on the internal structure of pion.
description: 22 pages, 10 figures. to appear in Nucl. Phys. B
Additional file 2: of Comparison of the efficacy and safety of tocilizumab for colchicine-resistant or colchicine-intolerant familial Mediterranean fever: study protocol for an investigator-initiated, multicenter, randomized, double-blind, placebo-controlled trial
Creators: name: Koga, Tomohiro
name: Shuntaro Sato
name: Miyamoto, Junya
name: Hagimori, Naoko
name: Kawazoe, Yurika
name: Arinaga, Kumiko
name: Fukushima, Chizu
name: Yamamoto, Hiroshi
name: Kawakami, Atsushi
Publisher: name: figshare
Year: 2018
Subjects: subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: List of Ethical Committee approvals. (DOCX 65 kb)
Nonequilibrium Critical Dynamics of the 2D XY model
Creators: name: Berthier, Ludovic
name: Holdsworth, Peter C. W.
name: Sellitto, Mauro
Publisher: name: arXiv
Year: 2000
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: The nonequilibrium critical dynamics of the 2D XY model is investigated numerically through Monte Carlo simulations and analytically in the spin-wave approximation. We focus in particular on the behaviour of the two-time response and correlation functions and show that the ageing dynamics depends on the initial conditions. The presence of critical fluctuations leads to non-trivial violations of the fluctuation-dissipation theorem apparently reminiscent of the three dimensional Edwards-Anderson spin glass model. We compute for this reason the finite-size overlap probability distribution function and find that it is related to the finite-time fluctuation-dissipation ratio obtained in the out of equilibrium dynamics, provided that the temperature is not very low.
description: Minor changes - Version accepted for publication - Journal of Physics A
Eryngium foetidum Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Apiales
Apiaceae
Eryngium
Eryngium foetidum

description: Eryngium foetidum Linnaeus, Species Plantarum 1: 232. 1753.
"Habitat in Virginia, Jamaica, Mexico, Canada." RCN: 1891.
 Lectotype (Wörz in Stuttgarter Beitr. Naturk., A, 596: 19. 1999): [icon] " Eryngium foliis angustis serratis foetidum " in Sloane, Voy. Jamaica 1: 264, t. 156, f. 3. 1707. - Typotype: Herb. Sloane 5: 47 (BM-SL).
 Current name: Eryngium foetidum L. (Apiaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part E), pp. 490-515 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 505, DOI: 10.5281/zenodo.291971
A proposal on complementary determination of the electro-weak mixing angles ${\rm sin^2θ_W}$ at a super Z-factory
Creators: name: Zheng, Xu-Chang
name: Chang, Chao-Hsi
name: Feng, Tai-Fu
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: A proposal on determination of the effective electro-weak mixing angle ${\rm sin^2θ_{eff}^f\;(f=c,b)}$ at a super Z-factory (an $e^+e^-$ collider designed with the possible highest luminosity and running around the center mass energy $\sqrt s=m_Z$) is proposed. It is to determine how the effective mixing angles depend on the flavors, especially the flavors $c$, $b$ (with the determined effective ones, the electro-weak mixing angles ${\rm sin^2θ_W^f\;(f=c,b)}$ of Standard Model can be derived out precisely). The key point of the proposal is that at such a super Z-factory, via measuring the forward-backward ($A_{FB}$), left-right ($A_{LR}$) and combined left-right forward-backward ($A^{FB}_{LR}$) asymmetries of the produced doubly heavy-flavored hadrons (such as $B_c$, $B_c^*$ and the baryons $H_{QQ'q}$: $Ξ_{cc}$, $Ξ_{bc}$ and $Ξ_{bb}$ etc) in the relevant production processes $e^+e^-\to B_c+\cdots$ and $e^+e^-\to H_{QQ'q}+\cdots$ one may complement the final determination of the mixing angle ${\rm sin^2θ_W^f\;(f=c,b)}$ of Standard Model. The advantage of the proposed way to determine the effective electro-weak mixing angles is that the doubly heavy flavor(s) and the out-going direction of the produced doubly-heavy hadron can be experimental determined precisely, i.e. there are no such errors caused by missing identification of the heavy flavor(s) and by determining the so-called thrust axis of the produced jets, which can not be avoided in the early determination at LEP-I and SLC.
description: 9 pages, 7 figures
Additional file 1: of Na+/K+ Balance and Transport Regulatory Mechanisms in Weedy and Cultivated Rice (Oryza sativa L.) Under Salt Stress
Creators: name: Yuhua Zhang
name: Jiapeng Fang
name: Xibao Wu
name: Liyao Dong
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Table S1. Gene sequences were obtained by Illumina sequencing and homology studies between cultivated and weedy rice genotypes. (DOCX 19 kb)
Cloud-Native Dataspaces: Experiences from the German Research Data Ecosystem
Creators: name: Beyvers, Sebastian
Publisher: name: Zenodo
Year: 2024
Subjects: subject: Cloud Computing
subject: Kubernetes
subject: Data Management

description: Data on Kubernetes and stateful applications have gained remarkable adoption across the community. But why stop there? Kubernetes and cloud-native tools can provide compelling core technologies for building sophisticated data ecosystems, from advanced metadata handling to workflows and events. Enter the realm of "dataspaces," a transformative concept empowering organizations to seamlessly integrate and synchronize data sharing patterns for diverse existing data landscapes, that can even extend across organizational boundaries. Our session will give practical examples how Kubernetes and open source tools can be used to harmonize a heterogeneous data ecosystem. The resulting cloud-native dataspaces increase interoperability, reduce vendor lock-ins, and create an overall boost in operational efficiency by enabling the use of modern DataOps practices.
Additional file 7 of PUFA-synthase-specific PPTase enhanced the polyunsaturated fatty acid biosynthesis via the polyketide synthase pathway in Aurantiochytrium
Creators: name: Wang, Sen
name: Lan, Chuanzeng
name: Wang, Zhuojun
name: Wan, Weijian
name: Cui, Qiu
name: Song, Xiaojin
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Additional file 7: Fig. S6. The relative transcription levels of the fatty acid synthesis genes in transformant containing empty plasmid.
Eryngium maritimum Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Apiales
Apiaceae
Eryngium
Eryngium maritimum

description: Eryngium maritimum Linnaeus, Species Plantarum 1: 233. 1753.
"Habitat ad Europae littora arenosa maritima." RCN: 1896.
 Lectotype (Reduron & Jarvis in Jarvis & al., Regnum Veg. 127: 46. 1993): Baeck s.n., Herb. Linn. No. 331.8 (LINN).
 Generitype of Eryngium Linnaeus (vide Hitchcock, Prop. Brit. Bot.: 138. 1929).
 Current name: Eryngium maritimum L. (Apiaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part E), pp. 490-515 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 505, DOI: 10.5281/zenodo.291971
Observations of solar chromospheric heating at sub-arcsec spatial resolution
Creators: name: Smitha, H. N.
name: Chitta, L. P.
name: Wiegelmann, T.
name: Solanki, S. K.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: A wide variety of phenomena such as gentle but persistent brightening, dynamic slender features (~100 km), and compact (~1'') ultraviolet (UV) bursts are associated with the heating of the solar chromosphere. High spatio-temporal resolution is required to capture the finer details of the likely magnetic reconnection-driven, rapidly evolving bursts. Such observations are also needed to reveal their similarities to large-scale flares, which are also thought to be reconnection driven, and more generally their role in chromospheric heating. Here we report observations of chromospheric heating in the form of a UV burst obtained with the balloon-borne observatory, SUNRISE. The observed burst displayed a spatial morphology similar to that of a large-scale solar flare with circular ribbon. While the co-temporal UV observations at 1.5'' spatial resolution and 24s cadence from the Solar Dynamics Observatory showed a compact brightening, the SUNRISE observations at diffraction-limited spatial resolution of 0.1'' at 7s cadence revealed a dynamic sub-structure of the burst that it is composed of extended ribbon-like features and a rapidly evolving arcade of thin (~0.1'' wide) magnetic loop-like features, similar to post-flare loops. Such a dynamic sub-structure reveals the small-scale nature of chromospheric heating in these bursts. Furthermore, based on magnetic field extrapolations, this heating event is associated with a complex fan-spine magnetic topology. Our observations strongly hint at a unified picture of magnetic heating in the solar atmosphere from some large-scale flares to small-scale bursts, all being associated with such a magnetic topology.
description: Accepted for publication in A&A, online movie of the observations is available at https://goo.gl/RRDuX4
Estimates of Vertex Tagging Efficiencies at a Muon Collider Higgs Factory
Creators: name: King, Bruce J.
Publisher: name: arXiv
Year: 1999
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: Tagging efficiencies and purities are estimated for the decay modes H -> b-bbar, H -> tau-taubar and H -> c-cbar of Higgs bosons produced at an s-channel muon collider Higgs factory.
description: 6 pages. No figures
title: ADCO, Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome IV, Cart. 188 (11 H 73), f. 0135r
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome IV, Archives départementales de la Côte-d'Or, Cart. 188 (11 H 73), f. 0135r, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome IV, Archives départementales de la Côte-d'Or, Cart. 188 (11 H 73), f. 0135r, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Super-Kamiokande atmospheric neutrino data, zenith distributions, and three-flavor oscillations
Creators: name: Fogli, G. L.
name: Lisi, E.
name: Marrone, A.
name: Scioscia, G.
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We present a detailed analysis of the zenith angle distributions of atmospheric neutrino events observed in the Super-Kamiokande (SK) underground experiment, assuming two-flavor and three-flavor oscillations (with one dominant mass scale) among active neutrinos. In particular, we calculate the five angular distributions associated to sub-GeV and multi-GeV μ-like and e-like events and to upward through-going muons, for a total of 30 accurately computed observables (zenith bins). First we study how such observables vary with the oscillation parameters, and then we perform a fit to the experimental data as measured in SK for an exposure of 33 kTy (535 days). In the two-flavor mixing case, we confirm the results of the SK Collaboration analysis, namely, that ν_μν_τoscillations are preferred over ν_μν_e, and that the no oscillation case is excluded with high confidence. In the three-flavor mixing case, we perform our analysis with and without the additional constraints imposed by the CHOOZ reactor experiment. In both cases, the analysis favors a dominance of the ν_μν_τchannel. Without the CHOOZ constraints, the amplitudes of the subdominant ν_μnu_e and ν_eν_τtransitions can also be relatively large, indicating that, at present, current SK data do not exclude sizable ν_e mixing by themselves. After combining the CHOOZ and SK data, the amplitudes of the subdominant transitions are constrained to be smaller, but they can still play a nonnegligible role both in atmospheric and other neutrino oscillation searches. In particular, we find that the ν_e appearance probability expected in long baseline experiments can reach the testable level of ~15%.
description: 35 pages (RevTeX), including 20 ps figures (with epsfig.sty)
Eryngium planum Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Apiales
Apiaceae
Eryngium
Eryngium planum

description: Eryngium planum Linnaeus, Species Plantarum 1: 233. 1753.
"Habitat in Russia, Polonia, Austria, Helvetia." RCN: 1893.
 Lectotype (designated here by Jury): Herb. Clifford: 87, Eryngium 1, sheet A (labelled “3”) (BM-000558216).
 Current name: Eryngium planum L. (Apiaceae).
 Note: Jury & Southam (in Jarvis & al. in Taxon 55: 212. 2006) indicated "Herb. Clifford: 87, Eryngium 1, sheet A (labelled “4”)” as the lectotype. Unfortunately sheet A is labelled “3”, and sheet B is labelled “4”, making this type choice ineffective. However, a typification is now formalised here.
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part E), pp. 490-515 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 505, DOI: 10.5281/zenodo.291971
title: The Use of Color Infrared Aerial Photography in Determining Salt Marsh Vegetation and Delimiting Man-Made Structures of Lynnhaven Bay, Virginia
Creators: name: Holman lll, Robert E.
Publisher: name: Old Dominion University
publisherIdentifier: https://ror.org/04zjtrb98
publisherIdentifierScheme: ROR
Year: 1974

description: Color infrared aerial photography was found to be superior to color aerial photography in an ecological study of Lynnhaven Bay, Virginia. The research was divided into three phases: 1) determination of the feasibility of correlating color infrared aerial photography with wetland species composition and zonation patterns, 2) determination of the accuracy of the aerial interpretation and problems related to the aerial method used, and 3) comparison of developed with undeveloped areas along Lynnhaven Bay's shoreline.

Wetland species composition and zonation patterns of major cones were correlated with aerial infrared photography and resulted in a high degree of accuracy. Problems with changing conditions existed, making it necessary to use several different characteristics in identification. The main characteristics used were known zonation patterns, textural signatures and color tones, Lynnhaven Bay's shoreline was 61.5 percent developed.
Additional file 1: of Comparison of the efficacy and safety of tocilizumab for colchicine-resistant or colchicine-intolerant familial Mediterranean fever: study protocol for an investigator-initiated, multicenter, randomized, double-blind, placebo-controlled trial
Creators: name: Koga, Tomohiro
name: Shuntaro Sato
name: Miyamoto, Junya
name: Hagimori, Naoko
name: Kawazoe, Yurika
name: Arinaga, Kumiko
name: Fukushima, Chizu
name: Yamamoto, Hiroshi
name: Kawakami, Atsushi
Publisher: name: figshare
Year: 2018
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: SPIRIT 2013 checklist: recommended items to address in a clinical trial protocol and related documents. (DOC 121 kb)
Periodic points and topological restriction homology
Creators: name: Malkiewich, Cary
name: Ponto, Kate
Publisher: name: arXiv
Year: 2018
Subjects: subject: Algebraic Topology (math.AT)
subject: K-Theory and Homology (math.KT)
subject: FOS: Mathematics
subject: 55M20, 55P42, 18D05, 55R70, 18D30, 55P91

description: We answer in the affirmative two conjectures made by Klein and Williams. First, in a range of dimensions, the equivariant Reidemeister trace defines a complete obstruction to removing $n$-periodic points from a self-map $f$. Second, this obstruction defines a class in topological restriction homology. We prove these results using duality and trace for bicategories. This allows for immediate generalizations, including a corresponding theorem for the fiberwise Reidemeister trace.
description: Accepted version. 39 pages, 9 figures
Additional file 1 of PUFA-synthase-specific PPTase enhanced the polyunsaturated fatty acid biosynthesis via the polyketide synthase pathway in Aurantiochytrium
Creators: name: Wang, Sen
name: Lan, Chuanzeng
name: Wang, Zhuojun
name: Wan, Weijian
name: Cui, Qiu
name: Song, Xiaojin
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Additional file 1: Fig. S1. Scheme for expression of pfaE gene into Aurantiochytrium sp. SD116.
Self Gravitating Fundamental Strings
Creators: name: Horowitz, Gary T.
name: Polchinski, Joseph
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We study the configuration of a typical highly excited string as one slowly increases the string coupling. The dominant interactions are the long range dilaton and gravitational attraction. In four spacetime dimensions, the string slowly contracts from its initial (large) size until it approaches the string scale where it forms a black hole. In higher dimensions, the string stays large until the coupling reaches a critical value, and then it rapidly collapses to a black hole. The implications for the recently proposed correspondence principle are discussed.
description: 20 pages, LaTeX
Perfect-fluid cylinders and walls - sources for the Levi-Civita space-time
Creators: name: Philbin, Thomas G.
Publisher: name: arXiv
Year: 1995
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: The diagonal metric tensor whose components are functions of one spatial coordinate is considered. Einstein's field equations for a perfect-fluid source are reduced to quadratures once a generating function, equal to the product of two of the metric components, is chosen. The solutions are either static fluid cylinders or walls depending on whether or not one of the spatial coordinates is periodic. Cylinder and wall sources are generated and matched to the vacuum (Levi--Civita) space--time. A match to a cylinder source is achieved for $-\frac{1}{2}\frac{1}{2}$, this case being without a Newtonian limit; the positive (negative) values of $\si$ correspond to a positive (negative) fluid density. The range of $\si$ for which a source has previously been matched to the Levi--Civita metric is $0\leq\si
description: 22 pages, LaTeX, one included figure. Revised version: three (non-perfect-fluid) interior solutions are added, one of which falsifies the original conjecture in Sec. 4, and the circular geodesics of the Levi-Civita space-time are discussed in a footnote
A Transformation-Proximal Bundle Algorithm for Multistage Adaptive Robust Optimization and Application to Constrained Robust Optimal Control
Creators: name: Ning, Chao
name: You, Fengqi
Publisher: name: arXiv
Year: 2018
Subjects: subject: Optimization and Control (math.OC)
subject: Systems and Control (eess.SY)
subject: FOS: Mathematics
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: This paper presents a novel transformation-proximal bundle algorithm for multistage adaptive robust optimization problems. By partitioning recourse decisions into state and control decisions, the proposed algorithm applies affine control policy only to state decisions and allows control decisions to be fully adaptive, thus transforming the original problem into an equivalent two-stage Adaptive Robust Optimization (ARO) problem. Importantly, this multi-to-two transformation is general enough to be employed with any two-stage ARO solution algorithms, thus opening a new avenue for a variety of multistage ARO algorithms. The proximal bundle method is developed for the resulting two-stage problem along with convergence analysis. In an inventory control application, the affine disturbance-feedback control policy suffers from a severe suboptimality with an average gap of 34.88%, while the proposed algorithm generates an average gap of merely 1.68%.
Additional file 8 of PUFA-synthase-specific PPTase enhanced the polyunsaturated fatty acid biosynthesis via the polyketide synthase pathway in Aurantiochytrium
Creators: name: Wang, Sen
name: Lan, Chuanzeng
name: Wang, Zhuojun
name: Wan, Weijian
name: Cui, Qiu
name: Song, Xiaojin
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Additional file 8: Table S2. Primers used in this work.
Security Evaluation for Block Scrambling-Based Image Encryption Including JPEG Distortion against Jigsaw Puzzle Solver Attacks
Creators: name: Chuman, Tatsuya
name: Kiya, Hitoshi
Publisher: name: arXiv
Year: 2018
Subjects: subject: Cryptography and Security (cs.CR)
subject: FOS: Computer and information sciences

description: Encryption-then-Compression (EtC) systems have been considered for the user-controllable privacy protection of social media like Twitter. The aim of this paper is to evaluate the security of block scrambling-based encryption schemes, which have been proposed to construct EtC systems. Even though this scheme has enough key spaces against brute-force attacks, each block in encrypted images has almost the same correlation as that of original images. Therefore, it is required to consider the security from different viewpoints from number theory-based encryption methods with provable security such as RSA and AES. In this paper, we evaluate the security of encrypted images including JPEG distortion by using automatic jigsaw puzzle solvers.
description: To appear in IEICE Trans. Fundamentals, vol.E101-A, no.12, December 2018
Pacing Equilibrium in First-Price Auction Markets
Creators: name: Conitzer, Vincent
name: Kroer, Christian
name: Panigrahi, Debmalya
name: Schrijvers, Okke
name: Sodomka, Eric
name: Stier-Moses, Nicolas E.
name: Wilkens, Chris
Publisher: name: arXiv
Year: 2018
Subjects: subject: Computer Science and Game Theory (cs.GT)
subject: FOS: Computer and information sciences

description: Mature internet advertising platforms offer high-level campaign management tools to help advertisers run their campaigns, often abstracting away the intricacies of how each ad is placed and focusing on aggregate metrics of interest to advertisers. On such platforms, advertisers often participate in auctions through a proxy bidder, so the standard incentive analyses that are common in the literature do not apply directly. In this paper, we take the perspective of a budget management system that surfaces aggregated incentives -- instead of individual auctions -- and compare first and second price auctions. We show that theory offers surprising endorsement for using a first price auction to sell individual impressions. In particular, first price auctions guarantee uniqueness of the steady-state equilibrium of the budget management system, monotonicity, and other desirable properties, as well as efficient computation through the solution to the well-studied Eisenberg-Gale convex program. Contrary to what one can expect from first price auctions, we show that incentives issues are not a barrier that undermines the system. Using realistic instances generated from data collected at real-world auction platforms, we show that bidders have small regret with respect to their optimal ex-post strategy, and they do not have a big incentive to misreport when they can influence equilibria directly by giving inputs strategically. Finally, budget-constrained bidders, who have significant prevalence in real-world platforms, tend to have smaller regrets. Our computations indicate that bidder budgets, pacing multipliers and regrets all have a positive association in statistical terms.
Neutrino Physics at Muon Colliders
Creators: name: King, Bruce J.
Publisher: name: arXiv
Year: 1999
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: An overview is given of the neutrino physics potential of future muon storage rings that use muon collider technology to produce, accelerate and store large currents of muons.
description: 8 pages. 1 figure
Simulx Documentation
Creators: name: Simulations Plus (United States)
Publisher: name: Zenodo
Year: 2024

description: This document contains detailed information on the Simulx software, part of MonolixSuite. The latest version of the documentation can always be found on the web page https://simulx.lixoft.com/. 

For more information, visit https://www.simulations-plus.com/software/monolix/simulx/ or https://lixoft.com/.
Interplay of real space and momentum space topologies in strongly correlated fermionic systems
Creators: name: Volovik, G. E.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: We discuss the momentum-space topology of 3+1 and 2+1 strongly correlated fermionic systems. For the 3+1 systems the important universality class is determined by the topologically stable Fermi points in momentum space. In the extreme limit of low energy the condensed matter system of this universality class acquires all the symmetries, which we know today in high energy physics: Lorentz invariance, gauge invariance, general covariance, etc. The chiral fermions as well as gauge bosons and gravity field arise as fermionic and bosonic collective modes of the system. This introduces the conceptual similarity between such condensed matter and the quantum vacuum of Standard Model, which also contains the Fermi point. For the 2+1 fermionic systems the momentum space topology gives rise to the quantization of different physical parameters, such as Hall conducivity and spin-Hall conductivity, and to quantum phase transitions with the abrupt change of the momentum-space topology. The combined p-space and r-space topology determines in particular the topology of the energy spectrum of fermion zero modes living within the topological defects; fermionic charges of the topologically nontrivial extended objects; axial anomaly; etc.
description: LaTeX file, 23 pages, no figures, prepared for Proccedings of XVIII CFIF Autumn School "Topology of strongly correlated systems", Lisbon 8-13 October 2000
Additional file 3: of KRas4B-PDE6δ complex stabilization by small molecules obtained by virtual screening affects Ras signaling in pancreatic cancer
Creators: name: Casique-Aguirre, Diana
name: Briseño-Díaz, Paola
name: Ponciano García-Gutiérrez
name: Rosa, Claudia
name: Quintero-Barceinas, Reyna
name: Rojo-Domínguez, Arturo
name: Vergara, Irene
name: Medina, Luis
name: Correa-Basurto, José
name: Bello, Martiniano
name: Rosaura Hernández-Rivas
name: RocioThompson-Bonilla, María
name: Vargas, Miguel
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Cancer

description: Table S3. Summary of histopathological analysis and in vivo evaluation by the D14 and C22 compounds on tumor growth in nude mice. (DOC 30 kb)
Eryngium pusillum Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Apiales
Apiaceae
Eryngium
Eryngium pusillum

description: Eryngium pusillum Linnaeus, Species Plantarum 1: 233. 1753.
"Habitat in Hispania." RCN: 1894.
 Lectotype (López González in Anales Jard. Bot. Madrid 42: 322. 1986): Herb. Clifford: 87, Eryngium 4 (BM-000558227).
 Current name: Eryngium pusillum L. (Apiaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part E), pp. 490-515 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 505, DOI: 10.5281/zenodo.291971
Simulx Documentation
Creators: name: Simulations Plus (United States)
Publisher: name: Zenodo
Year: 2023

description: This document contains detailed information on the Simulx software, part of MonolixSuite. The latest version of the documentation can always be found on the web page https://simulx.lixoft.com/. 

For more information, visit https://www.simulations-plus.com/software/monolix/simulx/ or https://lixoft.com/.
Eryngium tricuspidatum Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Apiales
Apiaceae
Eryngium
Eryngium tricuspidatum

description: Eryngium tricuspidatum Linnaeus, Demonstr. Pl. Horto Upsaliensi: 8. 1753.
"Habitat in Hispania, Loefl." RCN: 1895.
 Lectotype (Jury & Southam in Jarvis & al. in Taxon 55: 212. 2006): Herb. Linn. No. 331.6 (LINN).
 Current name: Eryngium tricuspidatum L. (Apiaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part E), pp. 490-515 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 505, DOI: 10.5281/zenodo.291971
Häufigkeit, Eigenschaften und Verbreitung von MRSA in Deutschland – Zur Situation 2017/2018
Creators: name: Layer, Franziska
name: Strommenger, Birgit
name: Cuny, Christiane
name: Noll, Ines
name: Eckmanns, Tim
name: Werner, Guido
Publisher: name: Robert Koch-Institut
Year: 2019
Subjects: subject: MRSA
subject: Staphylokokken
subject: NRZ
subject: Antibiotikaresistenz
subject: Typisierung
subject: 610 Medizin und Gesundheit

description: Im Epidemiologischen Bulletin 42/2019 berichtet das NRZ für Staphylokokken und Enterokokken über Häufigkeit, Eigenschaften und Verbreitung von MRSA in Deutschland. Trotz rückläufiger MRSA-Prävalenzen und -Inzidenzen ergibt sich im Vergleich mit den Vorjahren eine unverändert hohe Anzahl an Staphlococcus aureus-/MRSA-Einsendungen an das NRZ. Die detaillierte Analyse von Erregern, insbesondere die Erstellung eines sogenannten mikrobiellen genetischen Fingerabdrucks, ist unverzichtbar, um Ausbruchsgeschehen zu erkennen und evolutionäre Entwicklungen darzustellen. Bestimmte Ko-Resistenzen (Fluorchinolone, Makrolide) sind bei MRSA weiterhin rückläufig. Alleinig die Resistenzentwicklung gegenüber Tetracyclin zeigte einen leicht ansteigenden Trend.
Additional file 2: of KRas4B-PDE6δ complex stabilization by small molecules obtained by virtual screening affects Ras signaling in pancreatic cancer
Creators: name: Casique-Aguirre, Diana
name: Briseño-Díaz, Paola
name: Ponciano García-Gutiérrez
name: Rosa, Claudia
name: Quintero-Barceinas, Reyna
name: Rojo-Domínguez, Arturo
name: Vergara, Irene
name: Medina, Luis
name: Correa-Basurto, José
name: Bello, Martiniano
name: Rosaura Hernández-Rivas
name: RocioThompson-Bonilla, María
name: Vargas, Miguel
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Table S2. The time-dependence of RMSD and RG by D14 and C22 compounds that target wild-type and mutated KRas4B-PDE6δ molecular complexes. (DOC 35 kb)
title: ADCO, Cart. 186 (11 H 71), f. 0278v
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: Petot, Frédéric
name: CBMA/CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: LaMOP
subject: Chartes de la Bourgogne du Moyen Âge
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, t. II (XVe siècle), tome II, Archives départementales de la Côte-d'Or, C
art. 186 (11 H 71). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, t. II (XVe siècle), tome II, Archives départementales de la
 Côte-d'Or, Cart. 186 (11 H 71), f. 0278v, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-
project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Constructing biquandles
Creators: name: Horvat, Eva
Publisher: name: arXiv
Year: 2018
Subjects: subject: Group Theory (math.GR)
subject: Geometric Topology (math.GT)
subject: FOS: Mathematics

description: We define biquandle structures on a given quandle, and show that any biquandle is given by some biquandle structure on its underlying quandle. By determining when two biquandle structures yield isomorphic biquandles, we obtain a relationship between the automorphism group of a biquandle and the automorphism group of its underlying quandle. As an application, we determine the automorphism groups of Alexander and dihedral biquandles. We also discuss product biquandles and describe their automorphism groups.
description: 17 pages
Beyond Strings, Multiple Times and Gauge Theories of Area-Scalings Relativistic Transformations
Creators: name: Castro, Carlos
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Nottale's special scale-relativity principle was proposed earlier by the author as a plausible geometrical origin to string theory and extended objects. Scale Relativity is to scales what motion Relativity is to velocities. The universal, absolute, impassible, invariant scale under dilatations in Nature is taken to be the Planck scale, which is not the same as the string scale. Starting with ordinary actions for strings and other extended objects, we show that gauge theories of volume-resolutions scale-relativistic symmetries, of the world volume measure associated with the extended ``fuzzy'' objects, are a natural and viable way to formulate the geometrical principle underlying the theory of all extended objects. Gauge invariance can only be implemented if the extendon actions in $D$ target dimensions are embedded in $D+1$ dimensions with an extra temporal variable corresponding to the scaling dimension of the original string coordinates. This is achieved upon viewing the extendon coordinates, from the fuzzy worldvolume point of view, as noncommuting matrices valued in the Lie algebra of Lorentz-scale relativistic transformations. Preliminary steps are taken to merge motion relativity with scale relativity by introducing the gauge field that gauges the Lorentz-scale symmetries in the same vain that the spin connection gauges ordinary Lorentz transformations and, in this fashion, one may go beyond string theory to construct the sought-after General Theory of Scale-Motion Relativity. Such theory requires the introduction of the scale-graviton (in addition to the ordinary graviton) which is the field that gauges the symmetry which converts motion dynamics into scaling-resolutions dynamics and vice versa (the analog of the gravitino that gauges supersymmetry). To go beyond the quantum string geometry most probably
description: 18 pages, revised Tex file
Logistic Regression Augmented Community Detection for Network Data with Application in Identifying Autism-Related Gene Pathways
Creators: name: Zhao, Yunpeng
name: Pan, Qing
name: Du, Chengan
Publisher: name: arXiv
Year: 2018
Subjects: subject: Machine Learning (stat.ML)
subject: Machine Learning (cs.LG)
subject: Methodology (stat.ME)
subject: FOS: Computer and information sciences
subject: 62P10

description: When searching for gene pathways leading to specific disease outcomes, additional information on gene characteristics is often available that may facilitate to differentiate genes related to the disease from irrelevant background when connections involving both types of genes are observed and their relationships to the disease are unknown. We propose method to single out irrelevant background genes with the help of auxiliary information through a logistic regression, and cluster relevant genes into cohesive groups using the adjacency matrix. Expectation-maximization algorithm is modified to maximize a joint pseudo-likelihood assuming latent indicators for relevance to the disease and latent group memberships as well as Poisson or multinomial distributed link numbers within and between groups. A robust version allowing arbitrary linkage patterns within the background is further derived. Asymptotic consistency of label assignments under the stochastic blockmodel is proven. Superior performance and robustness in finite samples are observed in simulation studies. The proposed robust method identifies previously missed gene sets underlying autism related neurological diseases using diverse data sources including de novo mutations, gene expressions and protein-protein interactions.
Additional file 1: of KRas4B-PDE6δ complex stabilization by small molecules obtained by virtual screening affects Ras signaling in pancreatic cancer
Creators: name: Casique-Aguirre, Diana
name: Briseño-Díaz, Paola
name: Ponciano García-Gutiérrez
name: Rosa, Claudia
name: Quintero-Barceinas, Reyna
name: Rojo-Domínguez, Arturo
name: Vergara, Irene
name: Medina, Luis
name: Correa-Basurto, José
name: Bello, Martiniano
name: Rosaura Hernández-Rivas
name: RocioThompson-Bonilla, María
name: Vargas, Miguel
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Biotechnology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Table S1. Potential candidates to stabilize the KRas4B-PDE6δ complex. Results obtained from the virtual screening analysis. Frequency stands for the number of times a similar pose was obtained from different starting conditions during our docking procedure. (DOC 477 kb)
Additional file 2 of PUFA-synthase-specific PPTase enhanced the polyunsaturated fatty acid biosynthesis via the polyketide synthase pathway in Aurantiochytrium
Creators: name: Wang, Sen
name: Lan, Chuanzeng
name: Wang, Zhuojun
name: Wan, Weijian
name: Cui, Qiu
name: Song, Xiaojin
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Additional file 2: Fig. S2. Genomic PCR detection.