cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
A sheet-like structure in the proximity of compact DNA
Creators: name: Mishra, Garima
name: Bhattacharjee, Somendra M.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We determine the phase diagram of DNA with inter- and intra-strand native-pair interactions that mimic the compaction of DNA. We show that DNA takes an overall sheet-like structure in the region where an incipient transition to a compact phase would have occurred. The stability of this phase is due to the extra entropy from the folding of the sheet, which is absent in the remaining polymer-like states of the phase diagram.
description: 8 pages, 8 figures
Pseudorapidity dependence of anisotropic flow and its decorrelations using long-range multiparticle correlations in Pb-Pb and Xe-Xe collisions
Creators: name: ALICE Collaboration
Publisher: name: arXiv
Year: 2023
Subjects: subject: Nuclear Experiment (nucl-ex)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: The pseudorapidity dependence of elliptic ($v_2$), triangular ($v_3$), and quadrangular ($v_4$) flow coefficients of charged particles measured in Pb-Pb collisions at a centre-of-mass energy per nucleon pair of $\sqrt{s_{\rm NN}}=5.02$ TeV and in Xe-Xe collisions at $\sqrt{s_{\rm NN}}=5.44$ TeV with ALICE at the LHC are presented. The measurements are performed in the pseudorapidity range $-3.5 < η< 5$ for various centrality intervals using two- and multi-particle cumulants with the subevent method. The flow probability density function (p.d.f.) is studied with the ratio of flow coefficient $v_2$ calculated with four- and two-particle cumulant, and suggests that the variance of flow p.d.f. is independent of pseudorapidity. The decorrelation of the flow vector in the longitudinal direction is probed using two-particle correlations. The results measured with respect to different reference regions in pseudorapidity exhibit differences, argued to be a result of saturating decorrelation effect above a certain pseudorapidity separation, in contrast to previous publications which assign this observation to non-flow effects. The results are compared to $3+1$ dimensional hydrodynamic and the AMPT transport model calculations. Neither of the models is able to simultaneously describe the pseudorapidity dependence of measurements of anisotropic flow and its fluctuations. The results presented in this work highlight shortcomings in our current understanding of initial conditions and subsequent system expansion in the longitudinal direction. Therefore, they provide input for its improvement.
description: 29 pages, 10 captioned figures, authors from page 23, published version, figures at http://alice-publications.web.cern.ch/node/9495
sj-docx-1-pcr-10.1177_26323524231170881 – Supplemental material for ‘Intensive palliative care’: a qualitative study of issues related to nurses’ care of people with amyotrophic lateral sclerosis at end-of-life
Creators: name: Daneau, Stéphanie
name: Bourbonnais, Anne
name: Allard, Émilie
name: Asri, Myriam
name: Ummel, Deborah
name: Bolduc, Elliot
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: 111702 Aged Health Care
subject: FOS: Health sciences

description: Supplemental material, sj-docx-1-pcr-10.1177_26323524231170881 for ‘Intensive palliative care’: a qualitative study of issues related to nurses’ care of people with amyotrophic lateral sclerosis at end-of-life by Stéphanie Daneau, Anne Bourbonnais, Émilie Allard, Myriam Asri, Deborah Ummel and Elliot Bolduc in Palliative Care and Social Practice
Limits on dark matter annihilation in prompt cusps from the isotropic gamma-ray background
Creators: name: Delos, M. Sten
name: Korsmeier, Michael
name: Widmark, Axel
name: Blanco, Carlos
name: Linden, Tim
name: White, Simon D. M.
Publisher: name: arXiv
Year: 2023
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Recent studies indicate that thermally produced dark matter will form highly concentrated, low-mass cusps in the early universe that often survive until the present. While these cusps contain a small fraction of the dark matter, their high density significantly increases the expected gamma-ray flux from dark matter annihilation, particularly in searches of large angular regions. We utilize 14 years of Fermi-LAT data to set strong constraints on dark matter annihilation through a detailed study of the isotropic gamma-ray background, excluding with 95% confidence dark matter annihilation to $b\bar{b}$ final states for dark matter masses below 120 GeV.
description: 13 pages, 12 figures; accepted by PRD
Additional file 1 of Chronic obstructive pulmonary disease affects outcome in surgical patients with perioperative organ injury: a retrospective cohort study in Germany
Creators: name: Hochhausen, Nadine
name: Mechelinck, Mare
name: Kroh, Andreas
name: Rossaint, Rolf
name: Kork, Felix
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Supplementary Material 1
FCNCs, Proton Stability, $ g_μ-2$ Discrepancy, Neutralino cold Dark Matter in Flipped $SU(5) \times U(1)_χ$ from $F$ Theory with $ A_{4} $ Symmetry
Creators: name: Ghosh, Gayatri
Publisher: name: arXiv
Year: 2023
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We predict the low energy signatures of a Flipped $SU(5) \times U(1)_χ$ effective local model , constructed within the framework of F$-$theory based on $ A_{4} $ symmetry. The Flipped SU(5) model from F Theory in the field of particle physics is prominent due to its ability to construct realistic four$-$dimensional theories from higher$-$dimensional compactifications which necessitates a unified description of the fundamental forces and particles of nature, used for exploring various extensions of the Standard Model. We study Flipped $SU(5) \times U(1)_χ$ Grand Unified Theories (GUTs) with $ A_{4} $ modular symmetry. In our model due to different modular weights assignments, the fermion mass hierarchy exists with different weighton fields. The constraints on the Dirac neutrino Yukawa matrix allows a good tuning to quark and charged lepton masses and mixings for each weighton field, with the neutrino masses and lepton mixing well determined by the type I seesaw mechanism which occurs at the expense of some tuning which manifests itself in charged lepton flavour violating decays which we explore here. The minimal Flipped $SU(5$) model is supplemented with an extra right$-$handed type and its complex conjugate electron state, $ E_{c} + \bar{E_{c}} $, as well as neutral singlet fields. The $ E_{c} + \bar{E_{c}} $ pair gets masses of the order of TeV which solves the $ g_μ- 2$ discrepancy. The predictions of the model for charged lepton flavour violation decay rate and proton decay could be tested in near future experiments. Also we detect in our model the existence of neutralino, its charge mass and spin via direct and indirect detection.
description: 26 pages, 13 figures, 4 Tables
sj-docx-1-whe-10.1177_17455057231170977 – Supplemental material for Family planning interventions in Jordan: A scoping review
Creators: name: AlHamawi, Rana
name: Khader, Yousef
name: Al Nsour, Mohannad
name: AlQutob, Raeda
name: Badran, Eman
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: 111402 Obstetrics and Gynaecology
subject: FOS: Clinical medicine

description: Supplemental material, sj-docx-1-whe-10.1177_17455057231170977 for Family planning interventions in Jordan: A scoping review by Rana AlHamawi, Yousef Khader, Mohannad Al Nsour, Raeda AlQutob and Eman Badran in Women's Health
Additional file 1 of Serum tau protein elevation in migraine: a cross-sectional case–control study
Creators: name: Overeem, Lucas Hendrik
name: Raffaelli, Bianca
name: Fleischmann, Robert
name: Süße, Marie
name: Vogelgesang, Antje
name: Maceski, Aleksandra Maleska
name: Papadopoulou, Athina
name: Ruprecht, Klemens
name: Su, Wendy
name: Koch, Mirja
name: Siebert, Anke
name: Arkuszewski, Michal
name: Tenenbaum, Nadia
name: Kuhle, Jens
name: Reuter, Uwe
Publisher: name: figshare
Year: 2023
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Neuroscience
subject: Physiology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 1: Supplementary Table 1. Clinical and demographic characteristics of the subgroups of episodic and chronic migraine.
Modification of charged-particle jets in event-shape engineered Pb$-$Pb collisions at $\sqrt{s_{\rm NN}} = 5.02$ TeV
Creators: name: ALICE Collaboration
Publisher: name: arXiv
Year: 2023
Subjects: subject: Nuclear Experiment (nucl-ex)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: Charged-particle jet yields have been measured in semicentral Pb$-$Pb collisions at center-of-mass energy per nucleon-nucleon collision $\sqrt{s_{\rm NN}} = 5.02$ TeV with the ALICE detector at the LHC. These yields are reported as a function of the jet transverse momentum, and further classified by their angle with respect to the event plane and the event shape, characterized by ellipticity, in an effort to study the path-length dependence of jet quenching. Jets were reconstructed at midrapidity from charged-particle tracks using the anti-$k_{\rm T}$ algorithm with resolution parameters $R =$ 0.2 and 0.4, with event-plane angle and event-shape values determined using information from forward scintillating detectors. The results presented in this letter show that, in semicentral Pb$-$Pb collisions, there is no significant difference between jet yields in predominantly isotropic and elliptical events. However, out-of-plane jets are observed to be more suppressed than in-plane jets. Further, this relative suppression is greater for low transverse momentum ($<$ 50 GeV/$c$) $R =$ 0.2 jets produced in elliptical events, with out-of-plane to in-plane jet-yield ratios varying up to 5.2$σ$ between different event-shape classes. These results agree with previous studies indicating that jets experience azimuthally anisotropic suppression when traversing the QGP medium, and can provide additional constraints on the path-length dependence of jet energy loss.
description: 21 pages, 4 captioned figures, 2 tables, authors from page 15, published version, figures at http://alice-publications.web.cern.ch/node/9514
Monte Carlo simulation of Hard-, Square-Well, and Square-Shoulder Disks in narrow channels
Creators: name: Fantoni, Riccardo
Publisher: name: arXiv
Year: 2023
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Materials Science (cond-mat.mtrl-sci)
subject: Soft Condensed Matter (cond-mat.soft)
subject: Chemical Physics (physics.chem-ph)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: We perform Monte Carlo simulation of the thermodynamic and structural properties of Hard-, Square-Well, and Square-Shoulder Disks in narrow channels. For the thermodynamics we study the internal energy per particle and the longitudinal and transverse compressibility factor. For the structure we study the Transverse Density and Density of Pairs Profiles, the Radial Distribution Function and Longitudinal Distribution Function, and the (static) Longitudinal Structure Factor. We compare our results with a recent exact semi-analytic solution found by Montero and Santos for the single file formation and first nearest neighbor fluid and explore how their solution performs when these conditions are not fulfilled making it just an approximation.
description: 11 pages, 14 figures, 2 tables
sj-docx-1-ras-10.1177_00208523231156538 - Supplemental material for Assessing the role of gender-related aspects in public budgeting debates: A view of the central level in Germany
Creators: name: Mueller, Sarah
name: Saliterer, Iris
name: Korac, Sanja
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: 160607 International Relations
subject: FOS: Political science
subject: 160509 Public Administration

description: Supplemental material, sj-docx-1-ras-10.1177_00208523231156538 for Assessing the role of gender-related aspects in public budgeting debates: A view of the central level in Germany by Sarah Mueller, Iris Saliterer and Sanja Korac in International Review of Administrative Sciences
Supplemental Material - An open-source program for spatial decomposition of bus transit networks
Creators: name: Caros, Nicholas S
name: Stewart, Anson F
name: Attanucci, John
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: Geography
subject: 120599 Urban and Regional Planning not elsewhere classified
subject: FOS: Social and economic geography

description: Supplemental Material for An open-source program for spatial decomposition of bus transit networks by Nicholas S Caros, Anson F Stewart and John Attanucci in Environment and Planning B: Urban Analytics and City Science.
sj-docx-1-jiv-10.1177_08862605231169755 – Supplemental material for Targeted Violence as a Risk Factor for Posttraumatic Stress Disorder Among Cisgender Gay, Bisexual, and Other Men Who have Sex with Men in the United States
Creators: name: Wiginton, John Mark
name: Murray, Sarah M.
name: Baral, Stefan D.
name: Sanchez, Travis H.
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: 160299 Criminology not elsewhere classified
subject: FOS: Law

description: Supplemental material, sj-docx-1-jiv-10.1177_08862605231169755 for Targeted Violence as a Risk Factor for Posttraumatic Stress Disorder Among Cisgender Gay, Bisexual, and Other Men Who have Sex with Men in the United States by John Mark Wiginton, Sarah M. Murray, Stefan D. Baral and Travis H. Sanchez in Journal of Interpersonal Violence
Additional file 1 of Athletes’ experiences of using a self-directed psychological support, the BAck iN the Game (BANG) smartphone application, during rehabilitation for return to sports following anterior cruciate ligament reconstruction
Creators: name: Ringberg, Magnus
name: Eldh, Ann Catrine
name: Ardern, Clare L
name: Kvist, Joanna
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Neuroscience
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Mental Health

description: Supplementary Material 1
Softness Matters: Effects of Compression on the Behavior of Adsorbed Microgels at Interfaces
Creators: name: Gerelli, Yuri
name: Camerin, Fabrizio
name: Bochenek, Steffen
name: Schmidt, Maximilian M.
name: Maestro, Armando
name: Richtering, Walter
name: Zaccarelli, Emanuela
name: Scotti, Andrea
Publisher: name: arXiv
Year: 2023
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Applied Physics (physics.app-ph)
subject: FOS: Physical sciences

description: Deformable colloids and macromolecules adsorb at interfaces, as they decrease the interfacial energy between the two media. The deformability, or softness, of these particles plays a pivotal role in the properties of the interface. In this study, we employ a comprehensive \emph{in situ} approach, combining neutron reflectometry with molecular dynamics simulations, to thoroughly examine the profound influence of softness on the structure of microgel Langmuir monolayers under compression. Lateral compression of both hard and soft microgel particle monolayers induces substantial structural alterations, leading to an amplified protrusion of the microgels into the aqueous phase. However, a critical distinction emerges: hard microgels are pushed away from the interface, in stark contrast to the soft ones, which remain steadfastly anchored to it. Concurrently, on the air-exposed side of the monolayer, lateral compression induces a flattening of the surface of the hard monolayer. This phenomenon is not observed for the soft particles as the monolayer is already extremely flat even in the absence of compression. These findings significantly advance our understanding of the pivotal role of softness on both the equilibrium phase behavior of the monolayer and its effect when soft colloids are used as stabilizers of responsive interfaces and emulsions.
Accounting Information & Semi- Strong Stock Market Efficiency
Creators: name: Molanazari, Mahnaz
name: Rahmani, Ali
name: Hanieh Hekmat
name: MirHossein Mousavi
name: Asl, Hasan Ghalibaf
Publisher: name: figshare
Year: 2020
Subjects: subject: 150199 Accounting, Auditing and Accountability not elsewhere classified
subject: FOS: Economics and business
subject: 150102 Auditing and Accountability
subject: 150105 Management Accounting
subject: 150103 Financial Accounting

description: The purpose of this paper is to evaluate semi-strong market efficiencythrough review of the relation between increase or decrease of stock returnand financial statement information. Using sixty six rolling panel-logitmodels & accounting variables, we estimate increase or decrease of eachfirm’s stock return as a Pr summary amount and create a hedged portfoliovia zero investment strategy. The firm stocks with Pr values equal or higherthan 0. 6 are considered as a long position and the ones with Pr values equalor less than 0. 4 are considered as a short position. Returns from hedgedportfolio are the basis for judgment about market efficiency in the semistrong level. The sample consists of 58 firms listed in TSE during 2006 to2018. The results do not confirm the semi-strong market efficiency evenafter size and market risk adjustments. Also among all 17 accounting ratiosused in order to predict changes in return, the following ratios are moreoften significant: changes in total assets ratio, the financial expenses tosales ratio, the change in EPS ratio, the change in sale to total assets ratio,the gross income to sale ratio, and the earnings before tax to sale ratio.
On the existence of homogeneous solitons of gradient type for the G$_2$-Laplacian flow
Creators: name: Fino, Anna
name: Raffero, Alberto
Publisher: name: arXiv
Year: 2023
Subjects: subject: Differential Geometry (math.DG)
subject: FOS: Mathematics

description: In this note, we prove the existence of homogeneous gradient solitons for the G$_2$-Laplacian flow by providing the first known example of this type. This result singles out the G$_2$-Laplacian flow as the first known geometric flow admitting homogeneous gradient solitons on spaces that are one-dimensional extensions.
description: To appear in Proceedings of the American Mathematical Society
sj-pdf-3-ijo-10.1177_0306624X231165350 – Supplemental material for Art Therapy in Australian Prisons: A Research Agenda
Creators: name: Tucker, Sarah
name: Luetz, Johannes M.
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: 160299 Criminology not elsewhere classified
subject: FOS: Law

description: Supplemental material, sj-pdf-3-ijo-10.1177_0306624X231165350 for Art Therapy in Australian Prisons: A Research Agenda by Sarah Tucker and Johannes M. Luetz in International Journal of Offender Therapy and Comparative Criminology
Topologically compatible non-Hermitian skin effect
Creators: name: Lin, Rijia
name: Li, Linhu
Publisher: name: arXiv
Year: 2023
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The bulk-boundary correspondence (BBC) relates in-gap boundary modes to bulk topological invariants. In certain non-Hermitian topological systems, conventional BBC becomes invalid in the presence of the non-Hermitian skin effect (NHSE), which manifests as distinct energy spectra under the periodic and open boundary conditions and massive eigenstate localization at boundaries. In this work, we introduce a scheme to induce NHSE without breaking conventional BBC, dubbed as the topologically compatible NHSE (TC-NHSE). In a general one dimensional two-band model, we unveil two types of TC-NHSE that do not alter topological phase transition points under any circumstance or only in a certain parameter regime, respectively. Extending our model into two dimension, we find that TC-NHSE can be selectively compatible to different sets of Weyl points between different bands of the resultant semimetallic system, turning some of them into bulk Fermi arcs while keeping the rest unchanged. Our work hence helps clarify the intricate interplay between topology and NHSE in non-Hermitian systems, and provides a versatile approach for designing non-Hermitian topological systems where topological properties and NHSE do not interfere each other.
description: 10 pages, 8 figures. Comments are welcome
A stochastic algorithm without time discretization error for the Wigner equation
Creators: name: Muscato, Orazio
name: Wagner, Wolfgang
Publisher: name: Weierstrass Institute
Year: 2017
Subjects: subject: Wigner equation
subject: stochastic algorithms
subject: numerical experiments
subject: 65C05
subject: 60J25
subject: 81Q05

description: Stochastic particle methods for the numerical treatment of the Wigner equation are considered.  The approximation properties of these methods depend on several numerical parameters.  Such parameters are the number of particles, a time step (if transport and other processes are treated separately)  and the grid size (used for the discretization of the position and the wave-vector).  A stochastic algorithm without time discretization error is introduced. Its derivation is based on the theory of piecewise deterministic Markov processes.  Numerical experiments are performed in a one-dimensional test case.  Approximation properties with respect to the grid size and the number of particles are studied.  Convergence of a time-splitting scheme to the no-splitting algorithm is demonstrated.  The no-splitting algorithm is shown to be more efficient in terms of computational effort.
sj-docx-1-aut-10.1177_13623613231169547 – Supplemental material for Effects of prefrontal transcranial direct current stimulation on social functioning in autism spectrum disorder: A randomized clinical trial
Creators: name: Han, Yvonne MY
name: Chan, Melody MY
name: Shea, Caroline KS
name: Mo, Flora YM
name: Yiu, Klaire WK
name: Chung, Raymond CK
name: Cheung, Mei-Chun
name: Chan, Agnes S
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: FOS: Clinical medicine
subject: 111799 Public Health and Health Services not elsewhere classified
subject: FOS: Health sciences
subject: Education
subject: 130312 Special Education and Disability
subject: FOS: Educational sciences

description: Supplemental material, sj-docx-1-aut-10.1177_13623613231169547 for Effects of prefrontal transcranial direct current stimulation on social functioning in autism spectrum disorder: A randomized clinical trial by Yvonne MY Han, Melody MY Chan, Caroline KS Shea, Flora YM Mo, Klaire WK Yiu, Raymond CK Chung, Mei-Chun Cheung and Agnes S Chan in Autism
The Kmos Deep Survey: Dynamical Measurements Of Star-Forming Galaxies At Z ~ 3.5
Creators: name: Turner, Owen
name: Cirasuolo, Michele
name: Harrison, Chris
name: McLure, Ross
name: Dunlop, James
name: Swinbank, Mark
name: Johnson, Helen
name: Sobral, David
name: Jorryt Matthee
name: Sharples, Ray
Publisher: name: Zenodo
Year: 2017
Subjects: galaxies:high-redshift, galaxies:kinematics and dynamics, galaxies:evolution

description: This poster present dynamical measurements from the KMOS (K-band Multi-Object Spectrograph) Deep Survey (KDS), which is comprised of 78 typical star-forming galaxies at z = 3.5 in the mass range 9.0 <  log(M*) < 10.5.

We fit spatially and spectrally convolved mock datacubes to the observed data, in order to make beam-smearing corrected measurements of the intrinsic velocity dispersions and rotation velocities of 33 galaxies in the sample classed as spatially resolved and isolated.

The results suggest that the rotation-dominated galaxies in the sample are offset to lower velocities at fixed stellar mass and have higher velocity dispersions than star-forming galaxies in the local and intermediate redshift universe.

Only 1/3 of the galaxies in the sample are dominated by rotation, which hints that random motions are playing an increasingly significant role in supporting the dynamical mass in the systems.

When searching for evolution in scaling relations, such as the stellar mass Tully-Fisher relation, it is important to take these random motions into account.
sj-pdf-2-pmj-10.1177_02692163231171181 – Supplemental material for Models of care for people with dementia approaching end of life: A rapid review
Creators: name: Lewis, Suzanne
name: Triandafilidis, Zoi
name: Curryer, Cassie
name: Jeong, Sarah Yeun-Sim
name: Goodwin, Nicholas
name: Carr, Sally
name: Davis, Daneill
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: 110308 Geriatrics and Gerontology
subject: FOS: Clinical medicine
subject: 111702 Aged Health Care
subject: FOS: Health sciences

description: Supplemental material, sj-pdf-2-pmj-10.1177_02692163231171181 for Models of care for people with dementia approaching end of life: A rapid review by Suzanne Lewis, Zoi Triandafilidis, Cassie Curryer, Sarah Yeun-Sim Jeong, Nicholas Goodwin, Sally Carr and Daneill Davis in Palliative Medicine
sj-pdf-1-hhc-10.1177_10848223231170019 – for Health System Quality and Performance Indicators for Evaluating Home Care Programming: A Scoping Review
Creators: name: Jajszczok, Max
name: Eastwood, Cathy A.
name: Quan, Hude
name: Scott, Laurel D.
name: Gutscher, Abram
name: Zhao, Rachel
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: 111708 Health and Community Services
subject: FOS: Health sciences
subject: 111099 Nursing not elsewhere classified
subject: 111702 Aged Health Care
subject: 111799 Public Health and Health Services not elsewhere classified

description: sj-pdf-1-hhc-10.1177_10848223231170019 for Health System Quality and Performance Indicators for Evaluating Home Care Programming: A Scoping Review by Max Jajszczok, Cathy A. Eastwood, Hude Quan, Laurel D. Scott, Abram Gutscher and Rachel Zhao in Home Health Care Management & Practice
Additional file 1 of Association between contextual factors and coverage of the Acwy meningococcal vaccine, after three years of its overdue, in the vaccination calendar of adolescents in the state of Minas Gerais, Brazil: global space regressions
Creators: name: Gusmão, Josianne Dias
name: da Silva, Thales Philipe Rodrigues
name: Velasquez-Melendez, Gustavo
name: Mendes, Larissa Loures
name: Pessoa, Milene Cristine
name: Lachtim, Sheila Aparecida Ferreira
name: Felisbino-Mendes, Mariana Santos
name: Santos, Luana Carolina
name: Rodrigues, Gilmar José Coelho
name: Vimieiro, Aline Mendes
name: Vieira, Ed Wilson Rodrigues
name: Matozinhos, Fernanda Penido
Publisher: name: figshare
Year: 2023
Subjects: Biotechnology
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Science Policy

description: Additional file 1.
Supplemental Material - Two peas in a pod? Development of twin relationships in light of twins’ temperament differences
Creators: name: Segal, Hila
name: Gutermann, Shifra
name: Knafo-Noam, Ariel
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental Material for Two peas in a pod? Development of twin relationships in light of twins’ temperament differences by Hila Segal, Shifra Gutermann and Ariel Knafo-Noam in European Journal of Personality.
A dynamic state-based model of crowds
Creators: name: Amos, Martyn
name: Gwynne, Steve
name: Templeton, Anne
Publisher: name: arXiv
Year: 2023
Subjects: subject: Multiagent Systems (cs.MA)
subject: FOS: Computer and information sciences

description: We consider the problem of categorizing and describing the dynamic properties and behaviours of crowds over time. Previous work has tended to focus on a relatively static "typology"-based approach, which does not account for the fact that crowds can change, often quite rapidly. Moreover, the labels attached to crowd behaviours are often subjective and/or value-laden. Here, we present an alternative approach, loosely based on the statechart formalism from computer science. This uses relatively "agnostic" labels, which means that we do not prescribe the behaviour of an individual, but provide a context within which an individual might behave. This naturally describes the time-series evolution of a crowd as "threads" of states, and allows for the dynamic handling of an arbitrary number of "sub-crowds".
description: Presented at the 2023 Pedestrian and Evacuation Dynamics Conference, Eindhoven, The Netherlands, June 28-30 2023
Additional file 2 of Association between contextual factors and coverage of the Acwy meningococcal vaccine, after three years of its overdue, in the vaccination calendar of adolescents in the state of Minas Gerais, Brazil: global space regressions
Creators: name: Gusmão, Josianne Dias
name: da Silva, Thales Philipe Rodrigues
name: Velasquez-Melendez, Gustavo
name: Mendes, Larissa Loures
name: Pessoa, Milene Cristine
name: Lachtim, Sheila Aparecida Ferreira
name: Felisbino-Mendes, Mariana Santos
name: Santos, Luana Carolina
name: Rodrigues, Gilmar José Coelho
name: Vimieiro, Aline Mendes
name: Vieira, Ed Wilson Rodrigues
name: Matozinhos, Fernanda Penido
Publisher: name: figshare
Year: 2023
Subjects: Biotechnology
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Science Policy

description: Additional file 2.
sj-docx-1-ebi-10.1177_02780771231176476 - Supplemental material for Local Ecological Knowledge and Use of the Pacific Seahorse (Hippocampus ingens) by Residents of the State of Sinaloa, Mexico
Creators: name: Najera-Medellin, Jesus Alejandro
name: Quiñónez-Martínez, Miroslava
name: Narchi, Nemer E.
name: Santos-Fita, Dídac
name: Díaz-Gaxiola, Jesús Manuel
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: Anthropology
subject: FOS: Sociology

description: Supplemental material, sj-docx-1-ebi-10.1177_02780771231176476 for Local Ecological Knowledge and Use of the Pacific Seahorse (Hippocampus ingens) by Residents of the State of Sinaloa, Mexico by Jesus Alejandro Najera-Medellin, Miroslava Quiñónez-Martínez, Nemer E. Narchi, Dídac Santos-Fita, and Jesús Manuel Díaz-Gaxiola in Journal of Ethnobiology
Load Shifting Versus Manual Frequency Reserve: Which One is More Appealing to Flexible Loads?
Creators: name: Gade, Peter A. V.
name: Skjøtskift, Trygve
name: Ziras, Charalampos
name: Bindner, Henrik W.
name: Kazempour, Jalal
Publisher: name: arXiv
Year: 2023
Subjects: subject: Systems and Control (eess.SY)
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: This paper investigates how a thermostatically controlled load can deliver flexibility either in form of manual frequency restoration reserves (mFRR) or load shifting, and which one is financially more appealing to such a load. A supermarket freezer is considered as a representative flexible load, and a grey-box model describing its temperature dynamics is developed using real data from a supermarket in Denmark. Taking into account price and activation uncertainties, a two-stage stochastic mixed-integer linear program is formulated to maximize the flexibility value from the freezer. For practical reasons, we propose a linear policy to determine regulating power bids, and then linearize the mFRR activation conditions through the McCormick relaxation approach. For computational ease, we develop a decomposition technique, splitting the problem to a set of smaller subproblems, one per scenario. Examined on an out-of-sample simulation based on real Danish spot and balancing market prices in 2022, load shifting shows to be more profitable than mFRR provision, but is also more consequential for temperature deviations in the freezer.
Additional file 3 of Association between contextual factors and coverage of the Acwy meningococcal vaccine, after three years of its overdue, in the vaccination calendar of adolescents in the state of Minas Gerais, Brazil: global space regressions
Creators: name: Gusmão, Josianne Dias
name: da Silva, Thales Philipe Rodrigues
name: Velasquez-Melendez, Gustavo
name: Mendes, Larissa Loures
name: Pessoa, Milene Cristine
name: Lachtim, Sheila Aparecida Ferreira
name: Felisbino-Mendes, Mariana Santos
name: Santos, Luana Carolina
name: Rodrigues, Gilmar José Coelho
name: Vimieiro, Aline Mendes
name: Vieira, Ed Wilson Rodrigues
name: Matozinhos, Fernanda Penido
Publisher: name: figshare
Year: 2023
Subjects: Biotechnology
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Science Policy

description: Additional file 3.
Quantum Ising Heat Engines: A mean field study
Creators: name: Acharyya, Muktish
name: Chakrabarti, Bikas K.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We have studied the efficiencies of both classical and quantum heat engines using an Ising model as working fluid and the mean field equation for its non-equilibrium dynamics, formulated earlier\cite{acs,ac} to study the dynamical hysteresis and the dynamical phase transitions in the quantum Ising ferromagnets. We studied numerically the Ising magnet's nonintegrable coupled nonlinear first order differential equations of motion for a four stroke heat engine and compared the efficiencies in both classical and quantum limits using the quasi-static approximation. In both the pure classical and pure quantum cases, the numerically calculated efficiencies are much less than the corresponding Carnot values. Our analytical formulations of the efficiencies (both in pure classical as well as in pure quantum Ising heat engines) are found to agree well with the numerical estimates. Such formulations also indicate increased efficiency for the mixed case of a transverse field driven Ising engine in presence of nonzero longitudinal field. We also numerically checked and found that the efficiency of such a (mixed) quantum Ising heat engine can indeed have much higher efficiency for appropriate values of the transverse and longitudinal fields.
description: Eur. Phys. J. B (2024) (in press)
Hybrid physics-informed metabolic cybergenetics: process rates augmented with machine-learning surrogates informed by flux balance analysis
Creators: name: Espinel-Ríos, Sebastián
name: Avalos, José L.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Systems and Control (eess.SY)
subject: Optimization and Control (math.OC)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Mathematics

description: Metabolic cybergenetics is a promising concept that interfaces gene expression and cellular metabolism with computers for real-time dynamic metabolic control. The focus is on control at the transcriptional level, serving as a means to modulate intracellular metabolic fluxes. Recent strategies in this field have employed constraint-based dynamic models for process optimization, control, and estimation. However, this results in bilevel dynamic optimization problems, which pose considerable numerical and conceptual challenges. In this study, we present an alternative hybrid physics-informed dynamic modeling framework for metabolic cybergenetics, aimed at simplifying optimization, control, and estimation tasks. By utilizing machine-learning surrogates, our approach effectively embeds the physics of metabolic networks into the process rates of structurally simpler macro-kinetic models coupled with gene expression. These surrogates, informed by flux balance analysis, link the domains of manipulatable intracellular enzymes to metabolic exchange fluxes. This ensures that critical knowledge captured by the system's metabolic network is preserved. The resulting models can be integrated into metabolic cybergenetic schemes involving single-level optimizations. Additionally, the hybrid modeling approach maintains the number of system states at a necessary minimum, easing the burden of process monitoring and estimation. Our hybrid physics-informed metabolic cybergenetic framework is demonstrated using a computational case study on the optogenetically-assisted production of itaconate by $\textit{Escherichia coli}$.
description: 25 pages, 10 figures, journal submission (reviewed/accepted version)
Spatial wavefront shaping with a multipolar-resonant metasurface for structured illumination microscopy
Creators: name: Roy, Tamal
name: Brown, Peter T.
name: Shepherd, Douglas P.
name: Poulikakos, Lisa V.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: Structured illumination microscopy (SIM) achieves superresolution in fluorescence imaging through patterned illumination and computational image reconstruction, yet current methods require bulky, costly modulation optics and high-precision optical alignment. This work demonstrates how nano-optical metasurfaces, rationally designed to tailor the optical wavefront at sub-wavelength dimensions, hold great potential as ultrathin, single-surface, all-optical wavefront modulators for SIM. We computationally demonstrate this principle with a multipolar-resonant metasurface composed of silicon nanostructures which generate versatile optical wavefronts in the far field upon variation of the polarization or angle of incident light. Algorithmic optimization is performed to identify the seven most suitable illumination patterns for SIM generated by the metasurface based on three key criteria. We find that multipolar-resonant metasurface SIM (mrm-SIM) achieves resolution comparable to conventional methods by applying the seven optimal metasurface-generated wavefronts to simulated fluorescent objects and reconstructing the objects using proximal gradient descent. The work presented here paves the way for a metasurface-enabled experimental simplification of structured illumination microscopy.
description: TR and PTB contributed equally to this work
Additional file 2 of Identification of novel protein biomarkers and drug targets for colorectal cancer by integrating human plasma proteome with genome
Creators: name: Sun, Jing
name: Zhao, Jianhui
name: Jiang, Fangyuan
name: Wang, Lijuan
name: Xiao, Qian
name: Han, Fengyan
name: Chen, Jie
name: Yuan, Shuai
name: Wei, Jingsun
name: Larsson, Susanna C.
name: Zhang, Honghe
name: Dunlop, Malcolm G
name: Farrington, Susan M
name: Ding, Kefeng
name: Theodoratou, Evropi
name: Li, Xue
Publisher: name: figshare
Year: 2023
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: Additional file 2: Fig S1. Regional association plot for colocalization analysis of GREM1 protein with colorectal cancer (CRC) risk. Fig S2. Regional association plot for colocalization analysis of CHRDL2 protein with colorectal cancer risk. Fig S3. Regional association plot for colocalization analysis of CLSTN3 protein with colorectal cancer risk. Fig S4. Regional association plot for colocalization analysis of ADPGK protein with colorectal cancer risk. Fig S5. Regional association plot for colocalization analysis of CSF2RA protein with colorectal cancer risk. Fig S6. Regional association plot for colocalization analysis of CSAG1 protein with colorectal cancer risk. Fig S7. Regional association plot for colocalization analysis of STXBP6 protein with colorectal cancer risk. Fig S8. Regional association plot for colocalization analysis of CD86 protein with colorectal cancer risk. Fig S9. Regional association plot for colocalization analysis of FUT3 protein with colorectal cancer risk. Fig S10. Regional association plot for colocalization analysis of MMP2 protein with colorectal cancer risk. Fig S11. Regional association plot for colocalization analysis of TIMP2 protein with colorectal cancer risk. Fig S12. The summary-data-based Mendelian randomization (SMR) result of GREM1 with colorectal cancer (CRC) risk. Fig S13. The summary-data-based Mendelian randomization (SMR) result of CHRDL2 with colorectal cancer (CRC) risk. Fig S14. The summary-data-based Mendelian randomization (SMR) result of CLSTN3 with colorectal cancer (CRC) risk. Fig S15. The summary-data-based Mendelian randomization (SMR) result of CSF2RA with colorectal cancer (CRC) risk. Fig S16. The summary-data-based Mendelian randomization (SMR) result of CD86 with colorectal cancer (CRC) risk. Fig S17. The summary-data-based Mendelian randomization (SMR) result of MMP2 with colorectal cancer (CRC) risk. Fig S18. The summary-data-based Mendelian randomization (SMR) result of TIMP2 with colorectal cancer (CRC) risk. Fig S19. Single-cell type expression in normal colon tissue for the coding genes of proteins identified by proteome-wide Mendelian randomization. Fig S20. The Protein-protein interaction (PPI) network of proteins identified by proteome-wide Mendelian randomization.
Supplemental Material - Preclinical Safety Evaluation of the Human-Identical Milk Oligosaccharide Lacto-N-Triose II
Creators: name: Fang, Xu
name: Zhu, Wei
name: Zhao, Huiying
name: Yin, Wencheng
name: Song, Xiao
name: Liu, Fengxin
Publisher: name: SAGE Journals
Year: 2023
Subjects: Pharmacology and Pharmaceutical Sciences not elsewhere classified

description: Supplemental Material for Preclinical Safety Evaluation of the Human-Identical Milk Oligosaccharide Lacto-N-Triose II by Xu Fang, Wei Zhu, Huiying Zhao, Wencheng Yin, Xiao Song, and Fengxin Liu in International Journal of Toxicology.
Workflow-ready bioinformatics packages and Debian’s infrastructure for low-friction reproducible research
Creators: name: Contributors To The Debian Med Blend
name: Matúš Kalaš
name: Steinbiss, Sascha
name: Crusoe, Michael R.
name: Tille, Andreas
name: Möller, Steffen
Publisher: name: F1000Research
Year: 2017

description: Debian is one of the first GNU/Linux distributions and has always invited users from all technical and scientific backgrounds to contribute. For over 15 year with contributors from all around the globe the Debian Med special interest group organised packaging of platforms and toolkits for computational biology and medical informatics. Together with Debian Science and Debichem groups, additional packages of shared interest with neighbouring disciplines are maintained.

Since Debian automatically builds all software from source code, it allows bioinformatics workflows to become consistently auto-deployable across platforms, e.g. 32bit ARM7, 64bit ARM8, x86, IBM POWER, or mainframes. It is also offered as a base for all prominent virtualisation technologies and cloud infrastructure service providers. Compiler flags for Debian builds are strict, as expected for security-sensitive parts of a Linux distribution. Fixes to the source tree are communicated back. Builds are checked for consistency by the http://reproducible-builds.org initiative, and automated testing has become an integral part of Debian packaging shown on http://ci.debian.net.

The packages in Debian are in their latest versions, or otherwise updated quickly upon request. Similarly important, http://snapshot.debian.org hosts packages from the past to facilitate assessments of scientific advancements or to consistently continue or reproduce older studies. Requests for new packages are typically how the number of contributors grows - we actively help with our expertise and curiously welcome yours - be it with your package, your cloud template, your workflow, or your participation to our next meeting.
Phase transitions in the anisotropic XY ferromagnet with quenched nonmagnetic impurity
Creators: name: Mallick, Olivia
name: Acharyya, Muktish
Publisher: name: arXiv
Year: 2023
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: The three dimensional anisotropic XY ferromagnet has been studied by Monte Carlo simulation. The ferro-para phase transition has been observed to take place at a lower temperature for impure anisotropic XY ferromagnet. The pseudocritical temperature ($T_c^*$) has been found to decrease as the system gets more and more impure (impurity concentration $p$ increases). In the case of bilinear exchange type of anisotropy ($λ$), the pseudocritical temperature ($T_c^*$) increases linearly with $λ$ for any given concentration of nonmagnetic impurity ($p$). The slope of this linear function has been found to depend on the impurity concentration ($p$). The slope decreases linearly with the impurity concentration ($p$). In the case of the single site anisotropy ($D$), the pseudocritical temperature ($T_c^*$) has been found to decrease linearly with $p$ for fixed $D$. The critical temperature (for a fixed set of parameter values) has been estimated from the temperature variation of fourth order Binder cumulants ($U_L$) for different system sizes ($L$). The critical magnetisation ($M(T_c)$) and the maximum value of the susceptibility ($χ_p$) are calculated for different system sizes ($L$). The critical exponents for the assumed scaling laws, $M(T_c) \sim L^{-{β \over ν}}$ and $χ_p \sim L^{γ \over ν}$, are estimated through the finite size analysis. We have estimated, ${β \over ν}$, equals to $0.48\pm0.05$ and $0.37\pm0.04$ for bilinear exchange and single site anisotropy respectively. We have also estimated, ${γ \over ν}$ equals to $1.78\pm0.05$ and $1.81\pm0.05$ for bilinear exchange and single site anisotropy respectively.
description: To appear in Int. J. Mod. Phys. C (2024)
sj-docx-1-tag-10.1177_17562848231201728 – Supplemental material for 10 years of biologic use patterns in patients with inflammatory bowel disease: treatment persistence, switching and dose intensification – a nationwide population-based study
Creators: name: Koo, Hee Moon
name: Jun, Yu Kyung
name: Choi, Yonghoon
name: Shin, Cheol Min
name: Park, Young Soo
name: Kim, Nayoung
name: Lee, Dong Ho
name: Shin, Young Kee
name: Yoon, Hyuk
Publisher: name: SAGE Journals
Year: 2023
Subjects: Nutrition and Dietetics not elsewhere classified
Oncology and Carcinogenesis not elsewhere classified
Pharmacology and Pharmaceutical Sciences not elsewhere classified

description: Supplemental material, sj-docx-1-tag-10.1177_17562848231201728 for 10 years of biologic use patterns in patients with inflammatory bowel disease: treatment persistence, switching and dose intensification – a nationwide population-based study by Hee Moon Koo, Yu Kyung Jun, Yonghoon Choi, Cheol Min Shin, Young Soo Park, Nayoung Kim, Dong Ho Lee, Young Kee Shin and Hyuk Yoon in Therapeutic Advances in Gastroenterology
Applying the Fokker-Planck equation to x-ray phase and dark-field retrieval
Creators: name: LEATHAM, THOMAS AARON
Publisher: name: Monash University
Year: 2024
Subjects: classificationCode: 510302
subject: Classical and physical optics

description: This thesis designs a new method of x-ray imaging, a way to capture what are known as x-ray dark-field images. These dark-field images reveal where there are tiny structures within a patient, for example the tiny air sacs that make up the lung. The new method is based upon the Fokker-Planck equation, which describes how the x-ray wavefield evolves as the x-rays pass through the air from the patient to the x-ray detector. The thesis solves this equation, allowing dark-field x-ray images to be extracted from a simple x-ray imaging set-up.