cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Supplementary material for manuscript titled "Intrinsic thermoacoustic instability in hydrogen enriched partially premixed flames"
Creators: name: Dilip Kumar, Ankit
name: Massey, James
name: Rajendram Soundararajan, Preethi
name: Boxx, Isaac
name: Swaminathan, Nedunchezhian
Publisher: name: AIP Publishing
Year: 2025
Subjects: classificationCode: 40
subject: Engineering

description: Supplementary material containing an analogy of coupled pendula and the effect of flame position.
ANALYSIS OF FACTORS ASSOCIATED WITH THE COMPLIANCE OF PREGNANT WOMEN IN CONDUCTING TRIPLE ELIMINATION CHECKS (HIV, SYPHILIS AND HEPATITIS B) AT JONGAYA HEALTH CENTER MAKASSAR CITY YEAR 2023
Creators: name: Riska
name: Masni
name: Apik Indarty Moedjiono
name: Tahir Abdullah
name: Ridwan Mochtar Thaha
name: Wahiduddin
Publisher: name: Zenodo
Year: 2024
Subjects: Triple Elimination Screening, Compliance, Pregnant Women.

description: Abstract

Background: Based on data from the Makassar City Health Profile in 2019-2022, the number of pregnant women who conducted Triple Elimination checks increased by 20.41%. Looking at the amount of data based on the Makassar City Health Profile, HIV, Syphilis and Hepatitis B testing has increased every year, but has not met the targets set by the government. Objective: To determine the factors associated with the compliance of pregnant women in conducting HIV, syphilis and hepatitis B testing in the Jongaya Health Center Working Area, Makassar City in 2023. Methods: This research is a cross-sectional study design. The number of samples in this study was 163 pregnant women who visited Jongaya Health Center, with a purposive sampling technique. Bivariate data analysis using Chi-Square test and multivariate analysis using binary logistic regression. Results: the results of univariate analysis show that most pregnant women who are not compliant in conducting triple elimination checks are 66.9%, not working 67.5%, gestational age that is not at risk 58.3%, lack of knowledge 68.1%, negative attitudes 76.3%, parity that is not at risk 75.5%, close service distance 63.2%, no support 70.6%, and no health worker support 76.7%. The results of the bivariate analysis showed that there was no significant relationship between gestational age and parity with compliance with triple elimination checks in pregnant women and there was a relationship between occupation, knowledge, attitude, distance to health services, husband support, and health worker support with compliance with triple elimination checks in pregnant women... The results of the multivariate analysis show that of all the variables, the distance of health services is the most influential variable on compliance with Triple Elimination checks in pregnant women in the Jongaya Health Center Working Area of Makassar City in 2023. Conclusion: Most of the pregnant women were not compliant in performing triple elimination checks. Factors associated with compliance with triple elimination checks in pregnant women are occupation, knowledge, attitude, distance to health services, husband support and health worker support. Of all the variables that most influence the compliance of triple elimination checks in pregnant women is the distance of health services.
Additional file 1 of Associations between RetNet gene polymorphisms and the efficacy of orthokeratology for myopia control: a retrospective clinical study
Creators: name: Xia, Ruijing
name: Yu, Xiangyi
name: Wu, Hao
name: Peng, Lulu
name: Du, Zhenlin
name: Yu, Xiaoguang
name: Xing, Shilai
name: Lu, Fan
name: Mao, Xinjie
Publisher: name: figshare
Year: 2025
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Supplementary material 1. Detailed methods of DNA purification and variant annotation.
UNBELIEVABLE O(L^1.5) WORST CASE COMPUTATIONAL COMPLEXITY ACHIEVED BY spdspds ALGORITHM FOR LINEAR PROGRAMMING PROBLEM
Creators: name: HALEMANE, KESHAVA PRASAD
Publisher: name: Zenodo
Year: 1996
Subjects: optimization, linear programming, algorithm, simplex, symplex, symmetric primal dual symplex, spdspds, computational complexity

description: The Symmetric Primal-Dual Symplex Pivot Decision Strategy (spdspds) is a novel iterative algorithm to solve linear programming problems. Here, a symplex pivoting operation is considered simply as an exchange between a basic (dependent) variable and a non-basic (independent) variable, in the Tucker’s Compact Symmetric Tableau (CST) which is a unique symmetric representation common to both the primal as well as the dual of a linear programming problem in its standard canonical form. From this viewpoint, the classical simplex pivoting operation of Dantzig may be considered as a restricted special case. The infeasibility index associated with a symplex tableau is defined as the sum of the number of primal variables and the number of dual variables, which are infeasible. A measure of goodness as a global effectiveness measure of a pivot selection is defined/determined as/by the decrease in the infeasibility index associated with such a pivot selection. At each iteration the selection of the symplex pivot element is governed by the anticipated decrease in the infeasibility index - seeking the best possible decrease in the infeasibility index - from among a wide range of candidate choices with non-zero values - limited only by considerations of potential numerical instability. The algorithm terminates when further reduction in the infeasibility index is not possible; then the tableau is checked for the terminal tableau type to facilitate the problem classification - a termination with an infeasibility index of zero indicates optimum solution. The worst case computational complexity of spdspds is shown to be O(L1.5).
description: AMS MSC Mathematics Subject Classification: 90C05 ACM CCS Computing Classification System: F.2.1, G.1.6
Additional file 2 of Associations between RetNet gene polymorphisms and the efficacy of orthokeratology for myopia control: a retrospective clinical study
Creators: name: Xia, Ruijing
name: Yu, Xiangyi
name: Wu, Hao
name: Peng, Lulu
name: Du, Zhenlin
name: Yu, Xiaoguang
name: Xing, Shilai
name: Lu, Fan
name: Mao, Xinjie
Publisher: name: figshare
Year: 2025
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Supplementary material 2: Figure S1. Standard quality control of 60 WGS samples. Boxplot of (a) sample mean depth, (b) sample mean genotype quality (GQ), (c) sample mean call rate for 60 samples. d Principal component analysis plot comparing 60 individuals with East Asian populations from the 1000 Genomes Project.
UNBELIEVABLE O(L^1.5) WORST CASE COMPUTATIONAL COMPLEXITY ACHIEVED BY spdspds ALGORITHM FOR LINEAR PROGRAMMING PROBLEM
Creators: name: HALEMANE, KESHAVA PRASAD
Publisher: name: Zenodo
Year: 1996
Subjects: optimization, linear programming, algorithm, simplex, symplex, symmetric primal dual symplex, spdspds, computational complexity

description: The Symmetric Primal-Dual Symplex Pivot Decision Strategy (spdspds) is a novel iterative algorithm to solve linear programming problems. Here, a symplex pivoting operation is considered simply as an exchange between a basic (dependent) variable and a non-basic (independent) variable, in the Tucker's Compact Symmetric Tableau (CST) which is a unique symmetric representation common to both the primal as well as the dual of a linear programming problem in its standard canonical form. From this viewpoint, the classical simplex pivoting operation of Dantzig may be considered as a restricted special case. The infeasibility index associated with a symplex tableau is defined as the sum of the number of primal variables and the number of dual variables, which are infeasible. A measure of goodness as a global effectiveness measure of a pivot selection is defined/determined as/by the decrease in the infeasibility index associated with such a pivot selection. At each iteration the selection of the symplex pivot element is governed by the anticipated decrease in the infeasibility index - seeking the best possible decrease in the infeasibility index - from among a wide range of candidate choices with non-zero values - limited only by considerations of potential numerical instability. The algorithm terminates when further reduction in the infeasibility index is not possible; then the tableau is checked for the terminal tableau type to facilitate the problem classification - a termination with an infeasibility index of zero indicates optimum solution. The worst case computational complexity of spdspds is shown to be O(L1.5).
description: AMS MSC Mathematics Subject Classification: 90C05 ACM CCS Computing Classification System: F.2.1, G.1.6
UNBELIEVABLE O(L^1.5) WORST CASE COMPUTATIONAL COMPLEXITY ACHIEVED BY spdspds ALGORITHM FOR LINEAR PROGRAMMING PROBLEM
Creators: name: HALEMANE, KESHAVA PRASAD
Publisher: name: Zenodo
Year: 1996
Subjects: optimization, linear programming, algorithm, simplex, symplex, symmetric primal dual symplex, spdspds, computational complexity

description: UNBELIEVABLE O(L1.5) WORST CASE COMPUTATIONAL COMPLEXITY  ACHIEVED BY spdspds ALGORITHM FOR  LINEAR PROGRAMMING PROBLEM  Dr.(Prof.) Keshava Prasad Halemane,
 Professor - retired from
 Department of Mathematical And Computational Sciences
 National Institute of Technology Karnataka, Surathkal
 Srinivasnagar, Mangaluru - 575025, India.
 Residence: 8-129/12 SASHESHA, Sowjanya Road, Naigara Hills,
 Bikarnakatte, Kulshekar Post, Mangaluru - 575005. Karnataka State, India.
 k.prasad.h@gmail.com [+919481022946]
 https://arxiv.org/abs/1405.6902
 https://doi.org/10.5281/zenodo.4553754
 https://www.linkedin.com/in/keshavaprasadahalemane/
 https://archive.org/details/SymmetricPrimalDualSimplexPivotingDecisionStrategy-spdspds-19960217-KpH ABSTRACT  The Symmetric Primal-Dual Symplex Pivot Decision Strategy (spdspds) is a novel iterative algorithm to solve linear programming problems. Here, a symplex pivoting operation is considered simply as an exchange between a basic (dependent) variable and a non-basic (independent) variable, in the Tucker’s Compact Symmetric Tableau (CST) which is a unique symmetric representation common to both the primal as well as the dual of a linear programming problem in its standard canonical form. From this viewpoint, the classical simplex pivoting operation of Dantzig may be considered as a restricted special case. The infeasibility index associated with a symplex tableau is defined as the sum of the number of primal variables and the number of dual variables, which are infeasible. A measure of goodness as a global effectiveness measure of a pivot selection is defined/determined as/by the decrease in the infeasibility index associated with such a pivot selection. At each iteration the selection of the symplex pivot element is governed by the anticipated decrease in the infeasibility index - seeking the best possible decrease in the infeasibility index - from among a wide range of candidate choices with non-zero values - limited only by considerations of potential numerical instability. The algorithm terminates when further reduction in the infeasibility index is not possible; then the tableau is checked for the terminal tableau type to facilitate the problem classification - a termination with an infeasibility index of zero indicates optimum solution. The worst case computational complexity of spdspds is shown to be O(L1.5).
description: AMS MSC Mathematics Subject Classification: 90C05 ACM CCS Computing Classification System: F.2.1, G.1.6
Lakota Religious Traditions
Creators: name: Goeckner, Ryan
Publisher: name: Database of Religious History (DRH)
Year: 2019

description: The Lakota people are the westernmost members of the Očhéthi Šakówiŋ (Seven Council Fires). Primarily a linguistic designation, Lakota people are made up of a variety of different thiyóšpaye (bands) and today reside on the Cheyenne River, Pine Ridge, Standing Rock, and Rosebud reservations in western North and South Dakota as well as in various off-reservation communities around the United States. The goal of this entry is to focus primarily on the practice of Lakota religious traditions from the beginning of the reservation era to the present (2018). Membership in this group is primarily determined by acceptance within the community, however colonial policies of blood quantum continue to be imposed by the United States federal government, alongside other American Indian communities, complicating who may or may not be considered a legitimate practitioner of Lakota religion by other Lakotas. Additionally, political membership within Lakota communities does not guarantee any given individual's personal practice of these traditions because various Christian denominations continue to be practiced in these on and offreservation communities.
Search for the Anomalous KVV Coupling of the Higgs Boson and Vector Bosons Via Vector Boson Scattering
Creators: name: Zygala, Lara G
Publisher: name: University of Notre Dame
Year: 2025
Subjects: classificationCode: 510703
subject: Particle physics

description: An analysis attempting to place constraints on the gauge-quartic coupling, KVV, is presented. This analysis targets the process pp->HW^{+/-}W^{-/+} where both W bosons decay leptonically to a lepton (e, mu) and a neutrino and the Higgs boson decays to bb(bar). The full Run 2 proton-proton collision data collected by the CMS experiment at the LHC is used, corresponding to an integrated luminosity of 137fb^-1 at center of mass energy of 13TeV. No excess of data events over the expected background has been observed. The observed (expected) limit of KVV is set to [-1.92, 3.92] ([-1.92, 3.92]) at 95\% confidence interval.
UNBELIEVABLE O(L^1.5) WORST CASE COMPUTATIONAL COMPLEXITY ACHIEVED BY spdspds ALGORITHM FOR LINEAR PROGRAMMING PROBLEM
Creators: name: HALEMANE, KESHAVA PRASAD
Publisher: name: Zenodo
Year: 1996
Subjects: optimization, linear programming, algorithm, simplex, symplex, symmetric primal dual symplex, spdspds, computational complexity

description: UNBELIEVABLE O(L1.5) WORST CASE COMPUTATIONAL COMPLEXITY  ACHIEVED BY spdspds ALGORITHM FOR  LINEAR PROGRAMMING PROBLEM  Dr.(Prof.) Keshava Prasad Halemane, Professor - retired from Department of Mathematical And Computational Sciences National Institute of Technology Karnataka, Surathkal Srinivasnagar, Mangaluru - 575025, India. Residence: 8-129/12 SASHESHA, Sowjanya Road, Naigara Hills, Bikarnakatte, Kulshekar Post, Mangaluru - 575005. Karnataka State, India. k.prasad.h@gmail.com [+919481022946] https://arxiv.org/abs/1405.6902 https://doi.org/10.5281/zenodo.4553754 https://hal.archives-ouvertes.fr/hal-03087745v4 https://www.linkedin.com/in/keshavaprasadahalemane/ https://archive.org/details/SymmetricPrimalDualSimplexPivotingDecisionStrategy-spdspds-19960217-KpH ABSTRACT  The Symmetric Primal-Dual Symplex Pivot Decision Strategy (spdspds) is a novel iterative algorithm to solve linear programming problems. Here, a symplex pivoting operation is considered simply as an exchange between a basic (dependent) variable and a non-basic (independent) variable, in the Tucker’s Compact Symmetric Tableau (CST) which is a unique symmetric representation common to both the primal as well as the dual of a linear programming problem in its standard canonical form. From this viewpoint, the classical simplex pivoting operation of Dantzig may be considered as a restricted special case. The infeasibility index associated with a symplex tableau is defined as the sum of the number of primal variables and the number of dual variables, which are infeasible. A measure of goodness as a global effectiveness measure of a pivot selection is defined/determined as/by the decrease in the infeasibility index associated with such a pivot selection. At each iteration the selection of the symplex pivot element is governed by the anticipated decrease in the infeasibility index - seeking the best possible decrease in the infeasibility index - from among a wide range of candidate choices with non-zero values - limited only by considerations of potential numerical instability. The algorithm terminates when further reduction in the infeasibility index is not possible; then the tableau is checked for the terminal tableau type to facilitate the problem classification - a termination with an infeasibility index of zero indicates optimum solution. The worst case computational complexity of spdspds is shown to be O(L1.5).
description: AMS MSC Mathematics Subject Classification: 90C05 ACM CCS Computing Classification System: F.2.1, G.1.6
Additional file 3 of Associations between RetNet gene polymorphisms and the efficacy of orthokeratology for myopia control: a retrospective clinical study
Creators: name: Xia, Ruijing
name: Yu, Xiangyi
name: Wu, Hao
name: Peng, Lulu
name: Du, Zhenlin
name: Yu, Xiaoguang
name: Xing, Shilai
name: Lu, Fan
name: Mao, Xinjie
Publisher: name: figshare
Year: 2025
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Supplementary material 3. Table S1. Participant demographics of 545 and 60 samples.
TUT DARAXTIDAN IN VITRO SHAROITIDA NIHOLLAR OLISH
Creators: name: Karimova, D.K.
name: Xadjimetova, S.R.
Publisher: name: Zenodo
Year: 2024

description: Bugungi kunda dunyoning yuzdan ortiq davlatlarida tut daraxtini mevasi, yog‘ochsozlikda, landshaft dizayn, tabobatda va asosan keng miqyosda tut ipak qurtining ozuqa bazasi uchun etishtirilib kelinmoqda. Hozirgi vaqtda Xitoy Xalq Respublikasida 626 000 ga, Hindistonda 280 000 ga, Tailand va Braziliyada 35 000 gektardan ziyod maydonlarda aynan navdor tutlar etishtirilmoqda. Dunyo  bo‘yicha har yili 800-850 ming tonna tirik pilla xomashyosi etishtirilib, 192 ming tonnadan ortiq ipak tolasi tayyorlanmoqda.
A retrospective analysis of the perceived impact of the COVID-19 pandemic on systemic barriers to success for university student parents
Creators: name: Franklin, Khadeejah
name: Saval, Alexa
name: Cafer, Anne M.
name: Reinemann, Dana N.
Publisher: name: Health Research Alliance
Year: 2025
Subjects: classificationCode: 390299
subject: Education policy, sociology and philosophy not elsewhere classified

description: Introduction: Student parents, both undergraduate and graduate, face the difficult task of balancing their studies and raising children, and they are a population often neglected or forgotten by higher education administration. The COVID-19 pandemic enhanced already present issues student parents face through the implementation of virtual schooling, increased daycare costs and closings, staying home with sick children, and a lack of local support system, among others. Further, many student parents are graduate students who are performing research that requires physical campus space and equipment to fulfill their educational requirements, and their research progress come to a halt when the country locked down.
Methods: This study explored the struggles student parents faced prior to the COVID-19 pandemic, what issues the pandemic exacerbated, and what new problems have since arisen. Participants completed surveys assessing the consequences of being a student parent during the pandemic, coping resources available to them, the effect of being a student parent during the pandemic on their mental health, and demographic information.
Results: Prevalent themes include substantial declines in mental health, feelings of inadequacy in regards to both their parenting and academic abilities compared to their non-student parent peers, and a striking lack of resources or acknowledgement from their institution.
Discussion: The survey results are framed within the social-ecological model to better understand the systemic implications of student parent conditions. Finally, we formulate a set of recommendations to higher education administrations to inform them about the unique struggles student parents face and suggest strategies for mitigation.
Additional file 4 of Associations between RetNet gene polymorphisms and the efficacy of orthokeratology for myopia control: a retrospective clinical study
Creators: name: Xia, Ruijing
name: Yu, Xiangyi
name: Wu, Hao
name: Peng, Lulu
name: Du, Zhenlin
name: Yu, Xiaoguang
name: Xing, Shilai
name: Lu, Fan
name: Mao, Xinjie
Publisher: name: figshare
Year: 2025
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Supplementary material 4: Figure S2. Burden test on different types of variants. Burden analysis used logistic regression for (a) all type of variants (b) common variants and (c) rare variants between cases and controls. OR, odds ratio; CI, confidence interval.
title: Self‐Assembly Pathways of Triblock Janus Particles into 3D Open Lattices
Creators: name: Eslami, Hossein
name: Müller‐Plathe, Florian
Publisher: name: Wiley-VCH
Year: 2024

description: The self‐assembly of triblock Janus particles is simulated from a fluid to 3D open lattices: pyrochlore, perovskite, and diamond. The coarse‐grained model explicitly takes into account the chemical details of the Janus particles (attractive patches at the poles and repulsion around the equator) and it contains explicit solvent particles. Hydrodynamic interactions are accounted for by dissipative particle dynamics. The relative stability of the crystals depends on the patch width. Narrow, intermediate, and wide patches stabilize the pyrochlore‐, the perovskite‐, and the diamond‐lattice, respectively. The nucleation of all three lattices follows a two‐step mechanism: the particles first agglomerate into a compact and disordered liquid cluster, which does not crystallize until it has grown to a threshold size. Second, the particles reorient inside this cluster to form crystalline nuclei. The free‐energy barriers for the nucleation of pyrochlore and perovskite are ≈10 kBT, which are close to the nucleation barriers of previously studied 2D kagome lattices. The barrier height for the nucleation of diamond, however, is much larger (>20 kBT), as the symmetry of the triblock Janus particles is not perfect for a diamond structure. The large barrier is associated with the reorientation of particles, i.e., the second step of the nucleation mechanism.
title: The role of HRS phosphorylation in endosomal trafficking and signalling.
Creators: name: Grimes, DJ
Publisher: name: University of Liverpool Repository
Year: 2020

description: Hepatocyte growth factor receptor substrate (HRS) is a component of the ESCRT-0 complex. It is involved in the sorting of ubiquitylated receptors into the lumen of multivesicular bodies (MVBs), thus targeting them for lysosomal degradation. HRS is highly phosphorylated in response to stimulation by various growth factors, but despite this, the functional role of its phosphorylation is still contentious. Preliminary data from our laboratory suggested that HRS may also act as a signalling adaptor, involved in the crosstalk between receptor tyrosine kinases (RTKs) and G protein couple receptors (GPCRs). In order to investigate this hypothesis, I first examined the EGF dependent interactors of HRS by mass spectrometry. I then developed tools for the measurement of endosomal cAMP production and PKA signalling. My data suggests that HRS interacts with the E3 ligase deltex3-like (DTX3L) in an EGF dependent manner. Although an association between these proteins has previously been made, its EGF dependence is novel. DTX3L has previously been shown to modulate the recruitment of HRS to endosomes in response to stimulation of the G-protein coupled receptor CXCR4. This new finding offers a theoretical means through which different receptor classes could crosstalk and elicit an integrated signalling response. I further show that GFP-HRS is recruited directly to newly formed vesicles containing EGF and its receptor. Recruitment of HRS to endosomes/vesicles in response to TGFα, but not EGF, is partly dependent on phospho-tyrosine residues Y329 and Y334. Furthermore, HRS has recently been implicated in the recruitment of the recycling complex WASH to endosomes. This, combined with the previous observation, suggests that phosphorylation of these two sites may be involved in receptor recycling. Overall, my thesis generates new tools for the study of HRS function and for the analysis of endosomal signalling. I provide evidence for the role of HRS in RTK and GPCR crosstalk alongside providing insights into the mechanisms governing recruitment of HRS.
Peneidos, Camarones "comerciales"
Creators: name: Homa-Canché, Pedro
name: Ugalde, Diana
name: Simões, Nuno
Publisher: name: Zenodo
Year: 2019
Subjects: subject: Biodiversity
subject: Caribbean
subject: Ecology
subject: FOS: Biological sciences
subject: Ecosystem Ecology
subject: Gulf of Mexico
subject: Marine Biodiversity
subject: Marine Biology
subject: Marine Ecology
subject: Marine Environment
subject: Peneids shrimps
subject: Species diversity
subject: GBIF: 4551

description: This Infographic is a product of BDMY (https://www.bdmy.org.mx) project, thatwas produced with funds of the Harte Research Institute for Gulf of Mexico Studies, and CONABIO (Mexico).The information in this infographic was reviewed and validated by a group of specialists in the taxon.

Descubre más información sobre datos, investigaciones científicas, colecciones científicas y grupos de trabajo dedicados al estudio y conservación de la biodiversidad marina en https://www.bdmy.org.mx/

Discover more information about data, scientific research, scientific collections and working groups dedicated to the study and conservation of marine biodiversity at https://www.bdmy.org.mx/

Designed and illustrated by: naturae.art@gmail.com
Peneidos, Camarones "comerciales"
Creators: name: Homa-Canché, Pedro
name: Ugalde, Diana
name: Simões, Nuno
name: Guerra, Alberto
Publisher: name: Zenodo
Year: 2019
Subjects: subject: Biodiversity
subject: Caribbean
subject: Ecology
subject: FOS: Biological sciences
subject: Ecosystem Ecology
subject: Gulf of Mexico
subject: Marine Biodiversity
subject: Marine Biology
subject: Marine Ecology
subject: Marine Environment
subject: Peneids shrimps
subject: Species diversity

description: This Infographic is a product of BDMY (https://www.bdmy.org.mx) project, that
 was produced with funds of the Harte Research Institute for Gulf of
 Mexico Studies, and CONABIO (Mexico).
 The information in this infographic was reviewed and validated by a
 group of specialists in the taxon.
BMD-SRA: A Boosting Model for Differentiating Sequence Read Archive sequences
Creators: name: Bole, Martin
Publisher: name: Zenodo
Year: 2024

description: The number of sequence files deposited in the Sequence Read Archive (NCBI-SRA) has been growing exponentially through the years, and with it, the number of incorrectly annotated types of sequences. The submitted sequences are then used for genomic, metagenomic, and taxonomic studies. This presents a need in the research community for a model that facilitates the collection of correctly annotated data. This study aimed to develop a boosting classification model called BMDSRA that classifies input sequences into four sequence types: 1)Metagenomes, 2)Amplicons, 3)Single-Amplified Genomes (SAGs), 4)Isolated-Genomes.

 

For developing the Machine Learning (ML) algorithm, we gathered 3000 test samples for each sequence type respectively. Test samples were used for supervised ML. Metagenomes were collected from various metagenome databases (DBs) (Kasmanas et al., Nucleic Acids Research, 2020) (750 samples from each), manually curated, and created by our team. Amplicon samples were gathered from the Joint Genome Institute portal based on their library strategy. The SAG samples were collected by manually inspecting published research papers, proving they were sequenced from a single cell. The Isolated-Genomes were gathered from SRA, searching for bacteria-type strain Genomes from different taxonomies. The BDMSRA reads a small portion of the sequence file using a sub-sampling approach (SRA Toolkit Development Team, https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software) and extracts statistical features generated based on Shannon entropy, Tsallis entropy, and Fourier z-curve. The extracted features were evaluated using the QPFS method (Soheili et al., Scientific Programming, 2020), and the reliability of training data was tested with an outlier analysis.

 

From the 119 generated features, we chose 38 with the highest importance for developing the model. The outlier analysis showed that the SAG and Amplicon data sets were the most reliable, with few outliers. The outliers from Metagenomes and Isolated-Genomes were subjected to further manual investigation. The model was created and evaluated by using 5-fold cross-validation. The confusion matrix showed an overall accuracy of 92% (96% for SAGs, 95% for Amplicons, 92% for Metagenomes, and 85% for Isolated-Genomes). The false negatives from Isolated-Genomes classified as Metagenome (7.6%) and SAGs (5.9 %) are likely due to the wrong classification in the SRA. The false negatives from Metagenomes classified as Isolated-Genomes (6.7%) are potentially due to downloading process from our Dbs.

 

BMDSRA can help researchers verify that the sequences they submit or collect from public repositories are correctly annotated. Further, our tool could also select samples for metastudies and determine if sequence projects are well performed.
Additional file 1 of Global burden and cross-country inequalities in urinary tumors from 1990 to 2021 and predicted incidence changes to 2046
Creators: name: Feng, De-Chao
name: Li, Deng-Xiong
name: Wu, Rui-Cheng
name: Wang, Jie
name: Xiao, Yu-Han
name: Yoo, Koo Han
name: Ye, Xing
name: Wei, Wu-Ran
name: Kong, De-Pei
name: Tuo, Zhou-Ting
Publisher: name: figshare
Year: 2025
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Science Policy

description: Additional file 1: Materials and methods. Table S1 Age-standardized rate (ASR) of disability-adjusted Life years (DALYs) for bladder cancer (BCa) by sex for all countries in 2021. Table S2 Age-standardized rate (ASR) of disability-adjusted Life years (DALYs) for kidney cancer (KCa) by sex for all countries in 2021. Table S3 Age-standardized rate (ASR) of disability-adjusted Life years (DALYs) for prostate cancer (PCa) and testicular cancer (TCa) for all countries in 2021. Table S4 Summary indicators of sociodemographic index (SDI) related inequality in age-standardized rate (ASR) of disability-adjusted Life years (DALYs) for four urinary tumors worldwide in 1990 and 2021. Table S5 The global trends in age-standardized rate (ASR) and case number of incidence for four urinary tumors between 1992 and 2021, and predicted changes to 2046.
Functionalized primer initiated signal cycles and personal glucose meter for sensitive and portable miRNA analysis
Creators: name: Ding, Heguo
name: Xu, Yue
name: Fang, Fei
name: Wang, Hong
name: Chen, Anqi
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Computational Biology

description: MicroRNA (miRNA) has garnered considerable attention due to its diagnostic capabilities, such as in hypoxic cognitive impairment and cancers. However, the existing miRNA detection methods are commonly criticized for the drawbacks of low sensitivity and false-positive detection derived from interfering molecules. Here, we provide a novel, sensitive and portable method for miRNA detection by combining target identification based cyclization of padlocks, immobilized primer-based signal amplification and a personal glucose meter. The proposed method exhibits several advantages, including precise identification of specific sites, exceptional sensitivity and instrument-free feature. These attributes hold great promise for the diagnosis and clinical investigation of various diseases, such as cancer and hypoxic cognitive impairment, enabling a deeper understanding of their pathological and physiological aspects. With miRNA-155 as detective target, the feasibility of the method has been demonstrated. The padlock sequences are cyclized by miRNA-155, which subsequently hybridize with primer sequence that is immobilized on the surface of a 96-well plate, and the interfering molecules are removed. This DNA polymerase triggers a chain extension process on the terminus of primer sequence, activating DNAzyme based cleavage. Consequently, a multitude of linker sequences are generated to facilitate the formation of the ‘e/linker/f/sucrase’ on magnetic bead, thereby enabling the catalysis of sucrose into glucose. This enzymatic reaction may be identified and measured using the personal glucose meter. Skin and soft tissue infections caused by Pseudomonas aeruginosa is a common acquired disease in postpartum care. The existing miRNA detection methods are commonly criticized for the drawbacks of low sensitivity and false-positive detection derived from interfering molecules. Cyclization of padlock. The proximity ligation of HP and template sequence. Analytical performance (e.g. sensitivity and selectivity) of the established approach. Cyclization of padlock and immobilization of primer. The approach exhibits a wide detection range and a low limit of detection of 329 aM. This technique offers a sensitive and reliable approach for nucleic acid amplification-based detection.
Misplaced Trust Stolen Indigenous land is the foundation of the land-grant university system. Climate change is its legacy
Creators: name: Lee, Robert
name: Ahtone, Tristan
name: Tachine, Amanda
name: Garagiola, An
name: Goodwin, Audriana
name: Rose, Maria
name: Aldern, Clay
Publisher: name: Grist
Year: 2024

description: Over the past year, Grist has examined publicly available data to locate trust lands associated with land-grant universities seeded by the Morrill Act. We found 14 universities that matched this criteria. In the process, we identified their original sources and analyzed their ongoing uses. In all, we located and mapped more than 8.36 million surface and subsurface acres taken from 123 Indigenous nations. This land currently produces income for those institutions.
Evaluation with the Language Model Evaluation Harness for German
Creators: name: Schulz, Konstantin
Publisher: name: Zenodo
Year: 2022
Subjects: language models
evaluation
German
Language Model Evaluation Harness

description: Slides for a talk at the OpenGPT-X "Workshop on the State of the Art for Training Large Language Models"
description: The research presented in this talk was partially funded by the German Federal Ministry for Economic Affairs and Climate Action (BMWK) through the project OpenGPT-X, as a part of the Funding Competition GAIA-X.
Additional file 1 of Taking care of patients with recessive dystrophic epidermolysis bullosa from birth to adulthood: a multidisciplinary Italian Delphi consensus
Creators: name: El Hachem, May
name: Diociaiuti, Andrea
name: Bonamonte, Domenico
name: Brena, Michela
name: Lospalluti, Lucia
name: Magnoni, Cristina
name: Neri, Iria
name: Peris, Ketty
name: Tadini, Gianluca
name: Zambruno, Giovanna
Publisher: name: figshare
Year: 2025
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Hematology

description: Additional file 1.
Additional file 2 of Equity of access in rural and metropolitan dementia diagnosis, management, and care experiences: an exploratory qualitative study
Creators: name: Gulline, Hannah
name: Carmody, Sarah
name: Yates, Mark
name: Bevins, Amelia
name: Brodtmann, Amy
name: Loi, Samantha M.
name: Lim, Yen Ying
name: Macklin, Heather
name: Glennen, Karen
name: Woodward, Michael
name: Ayton, Scott
name: Ayton, Darshini
Publisher: name: figshare
Year: 2025
Subjects: Medicine
Environmental Sciences not elsewhere classified
Cancer
Mental Health

description: Additional file 2.
Supplementary document for Deep learning-augmented Computational Miniature Mesoscope - 5973918.pdf
Creators: name: Tian, Lei
name: Xue, Yujia
name: Yang, Qianwan
name: Hu, Guorong
name: Guo, Kehan
Publisher: name: Optica Publishing Group
Year: 2025
Subjects: Uncategorized

description: Supplement 1
ҚИРҒИЗИСТОН ВА ТОЖИКИСТОН ЎРТАСИДАГИ ЧЕГАРА МАСАЛАЛАРИ ҲАЛ ЭТИЛИШИНИНГ АЙРИМ ЖИҲАТЛАРИ
Creators: name: Жанзақов, Ж.И.
Publisher: name: Zenodo
Year: 2024

description: Мазкур мақолада Қирғизистон ва Тожикистон ўртасидаги чегара масалаларини ҳал этиш жараёнларининг ривожланиш босқичлари таҳлил қилинган.
The phylogenetic analysis of Armenian collections of medicinal tinder polypore Fomes fomentarius (Agaricomycetes, Polyporaceae)
Creators: name: Badalyan, Susanna
name: Zhuykova, Elena
name: Mukhin, Victor
Publisher: name: Italian Journal of Mycology
Year: 2022

description: The medicinal tinder polypore Fomes fomentarius is widely distributed in all floristic regions of Armenia on different woody substrates. The phylogenetic analysis of Armenian collections using ITS barcoding revealed that it is taxonomically complex species represented by sublineages A2 and B2 (in ratio 1:1) of European phylogenetic lineages A and B, which correspond to two cryptic sympatric species F. fomentarius sensu stricto and F. inzengae, respectively. These species are phylogenetically almost equidistant from Fomes fasciatus by the level of nucleotide divergence (6.75% and 7.17%, respectively). Nucleotide divergence between these two species is 1.85% which does not exceed the average level of intraspecific ITS variability in basidiomycetes fungi (3.33%). It is suggesting that F. fomentarius s.s. and F. inzengae are possibly not taxonomically separate species, but sympatric cryptic subspecies of F. fomentarius sensu lato. Both taxa significantly differ by their ecology and distribution: F. fomentarius s.s. is mainly found on Betula spp. trees and widespread in temperate forests, while F. inzengae has been recorded on Carpinus sp., Fagus sp., Populus sp. and other deciduous trees in subtropical latitudes. In Armenia, F. fomentarius s.s. was found on Fagus sp. and Quercus sp., while F. inzengae - on Carpinus sp., Juglans sp., Fagus sp., Populus sp., and Salix sp. trees. Although the species rank of Mediterranean subtropical species F. inzengae remains disputable it has been originally described for the mycobiota of Armenia.
description: Italian Journal of Mycology, Vol. 51 (2022)
LET-554: Transmittal letter for fossil fish transferred to Los Angeles Natural History Museum
Creators: name: Ryan, Christopher
Year: 2020
Subjects: subject: Santa Barbara (County)
valueUri: https://core.tdar.org/browse/geographic-keyword/3486/santa-barbara-county
subject: Vandenberg Air Force Base (VAFB)
valueUri: https://core.tdar.org/browse/geographic-keyword/85469/vandenberg-air-force-base-vafb
subject: Vandenberg Space Force Base (VSFB)
valueUri: https://core.tdar.org/browse/geographic-keyword/85584/vandenberg-space-force-base-vsfb
subject: California (State / Territory)
valueUri: https://core.tdar.org/browse/geographic-keyword/1484/california-state-territory
subject: Prehistoric
valueUri: https://core.tdar.org/browse/temporal-keyword/53/prehistoric
subject: Fossilized
valueUri: https://core.tdar.org/browse/culture-keyword/9372/fossilized
subject: Fauna
valueUri: https://core.tdar.org/browse/material-type/4/fauna
subject: Mineral
valueUri: https://core.tdar.org/browse/material-type/12/mineral
subject: Fossil
valueUri: https://core.tdar.org/browse/other-keyword/7115/fossil
subject: Consultation
valueUri: https://core.tdar.org/browse/investigation-type/4/consultation

description: This document is a letter transferring ownership of a fossil fish from Vandenberg Air Force Base to the Los Angeles County Natural History Museum. The fossil is an impression on an approximately 9 x 9 x 3-inch block of white chalky shale from Monterey shale formation.
Simple and sensitive detection of Pseudomonas aeruginosa in neonatal infection based on a both-end blocked peroxidase-mimicking DNAzyme
Creators: name: Chen, Dongyun
name: Pan, Yicong
name: Yu, Huan
name: Chen, Xiaoxiang
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Computational Biology

description: Developing a simple and highly sensitive approach for Pseudomonas aeruginosa (P. aeruginosa) detection is crucial, as it is closely associated with various disorders, such as newborn infections. Nevertheless, few of techniques have the capability to accurately identify P. aeruginosa with a high level of sensitivity and significantly improved stability. The employment of the both-end blocked peroxidase-mimicking DNAzyme significantly diminished the interferences from background signals, so conferring the approach with a high degree of selectivity and reproducibility. The proposed method is demonstrated with exceptional discernment capacity in differentiating interfering microorganisms. The simplicity, elevated sensitivity and high discerning capability make the method a highly promising alternative instrument for pathogenic bacteria detection. This research presents a novel method for detecting P. aeruginosa using a combination of a simple molecular beacon (MB), duplex-specific nuclease (DSN), and both-end blocked peroxidase-mimicking DNAzyme. The MB probe utilized in this method can be shielded from DSN hydrolysis without requiring any additional modifications by regulating the number of stem bases to five. This assay is simple yet precise in its ability to quantitatively detect P. aeruginosa with a high level of sensitivity and specificity. In addition, the beacon enabled the identification of P. aeruginosa without the need for labeling, exhibiting a higher sensitivity over the conventional hairpin fluorescence beacon based methods. Developing a simple and highly sensitive approach for detecting bacteria is crucial, as it is linked to various disorders, including newborn infections. Only a limited number of techniques have the capability to accurately identify Pseudomonas aeruginosa (P. aeruginosa) with a high level of sensitivity. Fluorescent validation of blocking and activating processes. Analytical performance (e.g. sensitivity and selectivity) of the established approach. Feasibility of the DSN assisted signal cycle and the both-end blocked peroxidase-mimicking DNAzyme. The approach exhibits a wide detection range (five orders of magnitude) and a low limit of detection of 57 cfu/ml. We have proposed a method for detecting P. aeruginosa that involves using a special enzyme that can cut both strands of DNA and block the ends.
Additional file 1 of Discussing the misnomer: Exploring multidimensional perception to academic dishonesty in Nigeria. Do school attributes really matter?
Creators: name: Ofem, Usani Joseph
name: Ajuluchukwu, Eunice Ngozi
name: Edam-Agbor, Imelda Barong
name: Orim, Faith Sylvester
name: Aquah, Patricia
name: Umo, Udeme Akaninyene
name: Solomon, Anaiah
name: Ogochukwu, Faith Igu
name: Osang, Anastecia William
name: Atah, Akpo Cletus
name: Obi, Joy Joseph
name: Anashie, Annastasia Iwang
name: Victor Ovat, Sylvia
Publisher: name: figshare
Year: 2025
Subjects: Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Science Policy

description: Supplementary Material 1.
National Guard Bureau Nationwide Programmatic Agreement for Army National Guard Readiness Centers Maintenance and Repair
Creators: name: The National Guard Bureau
name: National Conference Of State Historic Preservation Officers
name: Advisory Council On Historic Preservation
Publisher: name: Advisory Council on Historic Preservation
Year: 2010
Subjects: subject: United States
valueUri: https://core.tdar.org/browse/geographic-keyword/10460/united-states
subject: Historic
valueUri: https://core.tdar.org/browse/culture-keyword/25/historic
subject: Non-Domestic Structures
valueUri: https://core.tdar.org/browse/site-type/309/non-domestic-structures
subject: Repair
valueUri: https://core.tdar.org/browse/other-keyword/55998/repair
subject: Programmatic Agreement
valueUri: https://core.tdar.org/browse/other-keyword/153821/programmatic-agreement
subject: Army National Guard
valueUri: https://core.tdar.org/browse/other-keyword/166513/army-national-guard
subject: Maintenance
valueUri: https://core.tdar.org/browse/other-keyword/31140/maintenance
subject: Historic Properties
valueUri: https://core.tdar.org/browse/other-keyword/31316/historic-properties
subject: Advisory Council On Historic Preservation
valueUri: https://core.tdar.org/browse/other-keyword/123731/advisory-council-on-historic-preservation
subject: Program Alternatives
valueUri: https://core.tdar.org/browse/other-keyword/165733/program-alternatives
subject: National Conference of State Historic Preservation Officers
valueUri: https://core.tdar.org/browse/other-keyword/164681/national-conference-of-state-historic-preservation-officers
subject: Readiness Centers
valueUri: https://core.tdar.org/browse/other-keyword/166953/readiness-centers
subject: Heritage Management
valueUri: https://core.tdar.org/browse/investigation-type/24/heritage-management

description: Nationwide Programmatic Agreement for Army National Guard Readiness Centers Maintenance and Repair Among the National Guard Bureau, the National Conference of State Historic Preservation Officers, and the Advisory Council on Historic Preservation. Executed - December 10, 2010; Expiration - December 10, 2020.