cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Table S1 from A statistical model for brain networks inferred from large-scale electrophysiological signals
Creators: name: Obando, Catalina
name: Fallani, Fabrizio De Vico
Publisher: name: The Royal Society
Year: 2017
Subjects: Computational Biology

description: Network science has been extensively developed to characterize structural properties of complex systems, including brain networks inferred from neuroimaging data. As a result of the inference process, networks estimated from experimentally obtained biological data, represent one instance of a larger number of realizations with similar intrinsic topology. A modelling approach is therefore needed to support statistical inference on the bottom-up local connectivity mechanisms influencing the formation of the estimated brain networks. Here, we adopted a statistical model based on exponential random graphs (ERGM) to reproduce brain networks, or connectomes, estimated by spectral coherence between high-density electroencephalographic (EEG) signals. ERGMs are made up by different local graph metrics, whereas the parameters weight the respective contribution in explaining the observed network. We validated this approach in a dataset of N = 108 healthy subjects during eyes-open (EO) and eyes-closed (EC) resting-state conditions. Results showed that the tendency to form triangles and stars, reflecting clustering and node centrality, better explained the global properties of the EEG connectomes as compared to other combinations of graph metrics. In particular, the synthetic networks generated by this model configuration replicated the characteristic differences found in the real brain networks, with EO eliciting significantly higher segregation in the alpha frequency band (8–13 Hz) as compared to EC. Furthermore, the fitted ERGM parameter values provided complementary information showing that clustering connections are significantly more represented from EC to EO in the alpha range, but also in the beta band (14–29 Hz), which is known to play a crucial role in cortical processing of visual input and externally oriented attention. Taken together, these findings support the current view of the brain functional segregation and integration in terms of modules and hubs, and provide a statistical approach to extract new information on the (re)organizational mechanisms in healthy and diseased brains.
Additional file 10: of Global study of holistic morphological effectors in the budding yeast Saccharomyces cerevisiae
Creators: name: Suzuki, Godai
name: Wang, Yang
name: Kubo, Karen
name: Hirata, Eri
name: Ohnuki, Shinsuke
name: Ohya, Yoshikazu
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: Evolutionary Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Figure S8. Representation of gene functions with adjacent GO terms. Gray and black bars indicate the number of GO terms after summarization with REVIGO [29] using similarity cutoffs of 0.5 and 0.7, respectively (left y-axis). Four semantic similarity measures are supported by REVIGO: Resnik’s, Lin’s, Jiang and Conrath’s measures, and the SimRel measure [54]. Red dashed line indicates the number of GO terms prior to summarization. Right y-axis indicates the fraction of GO terms (after summarization/before summarization). Orange frame indicates the condition eventually selected. (PDF 108 kb)
Additional file 11: of Global study of holistic morphological effectors in the budding yeast Saccharomyces cerevisiae
Creators: name: Suzuki, Godai
name: Wang, Yang
name: Kubo, Karen
name: Hirata, Eri
name: Ohnuki, Shinsuke
name: Ohya, Yoshikazu
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Figure S9. Fractions of genes with unknown function. Each bar indicates the fraction of genes with unknown functions identified by direct annotation to GO:0008150 (biological process) in each gene group (Iâ VI). (PDF 112Â kb)
Supplementary Text from A statistical model for brain networks inferred from large-scale electrophysiological signals
Creators: name: Obando, Catalina
name: Fallani, Fabrizio De Vico
Publisher: name: The Royal Society
Year: 2017
Subjects: Computational Biology

description: Network science has been extensively developed to characterize structural properties of complex systems, including brain networks inferred from neuroimaging data. As a result of the inference process, networks estimated from experimentally obtained biological data, represent one instance of a larger number of realizations with similar intrinsic topology. A modelling approach is therefore needed to support statistical inference on the bottom-up local connectivity mechanisms influencing the formation of the estimated brain networks. Here, we adopted a statistical model based on exponential random graphs (ERGM) to reproduce brain networks, or connectomes, estimated by spectral coherence between high-density electroencephalographic (EEG) signals. ERGMs are made up by different local graph metrics, whereas the parameters weight the respective contribution in explaining the observed network. We validated this approach in a dataset of N = 108 healthy subjects during eyes-open (EO) and eyes-closed (EC) resting-state conditions. Results showed that the tendency to form triangles and stars, reflecting clustering and node centrality, better explained the global properties of the EEG connectomes as compared to other combinations of graph metrics. In particular, the synthetic networks generated by this model configuration replicated the characteristic differences found in the real brain networks, with EO eliciting significantly higher segregation in the alpha frequency band (8–13 Hz) as compared to EC. Furthermore, the fitted ERGM parameter values provided complementary information showing that clustering connections are significantly more represented from EC to EO in the alpha range, but also in the beta band (14–29 Hz), which is known to play a crucial role in cortical processing of visual input and externally oriented attention. Taken together, these findings support the current view of the brain functional segregation and integration in terms of modules and hubs, and provide a statistical approach to extract new information on the (re)organizational mechanisms in healthy and diseased brains.
Table S3 from A statistical model for brain networks inferred from large-scale electrophysiological signals
Creators: name: Obando, Catalina
name: Fallani, Fabrizio De Vico
Publisher: name: The Royal Society
Year: 2017
Subjects: Computational Biology

description: Network science has been extensively developed to characterize structural properties of complex systems, including brain networks inferred from neuroimaging data. As a result of the inference process, networks estimated from experimentally obtained biological data, represent one instance of a larger number of realizations with similar intrinsic topology. A modelling approach is therefore needed to support statistical inference on the bottom-up local connectivity mechanisms influencing the formation of the estimated brain networks. Here, we adopted a statistical model based on exponential random graphs (ERGM) to reproduce brain networks, or connectomes, estimated by spectral coherence between high-density electroencephalographic (EEG) signals. ERGMs are made up by different local graph metrics, whereas the parameters weight the respective contribution in explaining the observed network. We validated this approach in a dataset of N = 108 healthy subjects during eyes-open (EO) and eyes-closed (EC) resting-state conditions. Results showed that the tendency to form triangles and stars, reflecting clustering and node centrality, better explained the global properties of the EEG connectomes as compared to other combinations of graph metrics. In particular, the synthetic networks generated by this model configuration replicated the characteristic differences found in the real brain networks, with EO eliciting significantly higher segregation in the alpha frequency band (8–13 Hz) as compared to EC. Furthermore, the fitted ERGM parameter values provided complementary information showing that clustering connections are significantly more represented from EC to EO in the alpha range, but also in the beta band (14–29 Hz), which is known to play a crucial role in cortical processing of visual input and externally oriented attention. Taken together, these findings support the current view of the brain functional segregation and integration in terms of modules and hubs, and provide a statistical approach to extract new information on the (re)organizational mechanisms in healthy and diseased brains.
Additional file 1: of A review of promoting access to medicines in China - problems and recommendations
Creators: name: Sun, Jing
name: Hu, Cecile
name: Stuntz, Mark
name: Hogerzeil, Hans
name: Liu, Yuanli
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Science Policy

description: Key pharmaceutical sector reform policies issued by the Chinese Communist Party Central Committee (CCPCC) & State Council (SC) (1997â 2017). (DOC 31Â kb)
Additional file 1: of Global study of holistic morphological effectors in the budding yeast Saccharomyces cerevisiae
Creators: name: Suzuki, Godai
name: Wang, Yang
name: Kubo, Karen
name: Hirata, Eri
name: Ohnuki, Shinsuke
name: Ohya, Yoshikazu
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics

description: Figure S1. Dimensional reduction of morphological data through principal component analysis (PCA). (A) Cumulative contribution ratio (CCR) of PCA based on data of 4718 gene deletion mutants. Black bars indicate the contribution ratio of each PC (left axis). Red circles and curve indicate CCR (right axis). Horizontal and vertical red dashed lines indicate CCR = 0.8 and PC57, respectively. (B) Variance of PC scores in each PC. Black and yellow bars indicate 4718 gene deletion mutants and the wild type, respectively. Vertical red lines indicate the position of PCs reaching the indicated CCR. (C) Proportion of the number of PCs of wild type with larger variance than that of deletion mutants. Proportion of the number of PCs was counted for each indicated range of the CCR. (PDF 284 kb)
Additional file 2: of A review of promoting access to medicines in China - problems and recommendations
Creators: name: Sun, Jing
name: Hu, Cecile
name: Stuntz, Mark
name: Hogerzeil, Hans
name: Liu, Yuanli
Publisher: name: figshare
Year: 2018
Subjects: Biotechnology
Biological Sciences not elsewhere classified
Developmental Biology
Science Policy

description: Outline of the key informants interview and focused group discussion. (DOC 28Â kb)
Additional file 3: of Global study of holistic morphological effectors in the budding yeast Saccharomyces cerevisiae
Creators: name: Suzuki, Godai
name: Wang, Yang
name: Kubo, Karen
name: Hirata, Eri
name: Ohnuki, Shinsuke
name: Ohya, Yoshikazu
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Information Systems not elsewhere classified
subject: Developmental Biology
subject: Plant Biology
subject: Virology

description: Figure S2. Validation of morphological phenotypes of holistic morphological mutants. (A) Nineteen randomly selected deletion mutants with holistic morphological abnormalities. Scatter plot of non-essential gene deletion mutants in holistic morphological abnormality (x-axis) and specific morphological abnormality (y-axis). Cyan, gray, and orange circles indicate the 19 selected mutants, other mutants, and 109 replicates of the wild type. Horizontal and vertical red lines indicate FDR = 0.01. (B) Confirmation of holistic morphological abnormality. Holistic morphological abnormality of each mutant was estimated by the Euclidean distance from the mean of 19 replicates of the wild type in 57-dimensional orthogonal space. Red and blue boxes indicate mutants (left axis) and 19 replicates of the wild type (right axis), respectively. Vertical solid red line indicates FDR = 0.01. Blue curved line indicates a gamma distribution fitted to the wild type. (PDF 3266 kb)
Figure S3 from A statistical model for brain networks inferred from large-scale electrophysiological signals
Creators: name: Obando, Catalina
name: Fallani, Fabrizio De Vico
Publisher: name: The Royal Society
Year: 2017
Subjects: Computational Biology

description: Network science has been extensively developed to characterize structural properties of complex systems, including brain networks inferred from neuroimaging data. As a result of the inference process, networks estimated from experimentally obtained biological data, represent one instance of a larger number of realizations with similar intrinsic topology. A modelling approach is therefore needed to support statistical inference on the bottom-up local connectivity mechanisms influencing the formation of the estimated brain networks. Here, we adopted a statistical model based on exponential random graphs (ERGM) to reproduce brain networks, or connectomes, estimated by spectral coherence between high-density electroencephalographic (EEG) signals. ERGMs are made up by different local graph metrics, whereas the parameters weight the respective contribution in explaining the observed network. We validated this approach in a dataset of N = 108 healthy subjects during eyes-open (EO) and eyes-closed (EC) resting-state conditions. Results showed that the tendency to form triangles and stars, reflecting clustering and node centrality, better explained the global properties of the EEG connectomes as compared to other combinations of graph metrics. In particular, the synthetic networks generated by this model configuration replicated the characteristic differences found in the real brain networks, with EO eliciting significantly higher segregation in the alpha frequency band (8–13 Hz) as compared to EC. Furthermore, the fitted ERGM parameter values provided complementary information showing that clustering connections are significantly more represented from EC to EO in the alpha range, but also in the beta band (14–29 Hz), which is known to play a crucial role in cortical processing of visual input and externally oriented attention. Taken together, these findings support the current view of the brain functional segregation and integration in terms of modules and hubs, and provide a statistical approach to extract new information on the (re)organizational mechanisms in healthy and diseased brains.
Figure S1 from A statistical model for brain networks inferred from large-scale electrophysiological signals
Creators: name: Obando, Catalina
name: Fallani, Fabrizio De Vico
Publisher: name: The Royal Society
Year: 2017
Subjects: Computational Biology

description: Network science has been extensively developed to characterize structural properties of complex systems, including brain networks inferred from neuroimaging data. As a result of the inference process, networks estimated from experimentally obtained biological data, represent one instance of a larger number of realizations with similar intrinsic topology. A modelling approach is therefore needed to support statistical inference on the bottom-up local connectivity mechanisms influencing the formation of the estimated brain networks. Here, we adopted a statistical model based on exponential random graphs (ERGM) to reproduce brain networks, or connectomes, estimated by spectral coherence between high-density electroencephalographic (EEG) signals. ERGMs are made up by different local graph metrics, whereas the parameters weight the respective contribution in explaining the observed network. We validated this approach in a dataset of N = 108 healthy subjects during eyes-open (EO) and eyes-closed (EC) resting-state conditions. Results showed that the tendency to form triangles and stars, reflecting clustering and node centrality, better explained the global properties of the EEG connectomes as compared to other combinations of graph metrics. In particular, the synthetic networks generated by this model configuration replicated the characteristic differences found in the real brain networks, with EO eliciting significantly higher segregation in the alpha frequency band (8–13 Hz) as compared to EC. Furthermore, the fitted ERGM parameter values provided complementary information showing that clustering connections are significantly more represented from EC to EO in the alpha range, but also in the beta band (14–29 Hz), which is known to play a crucial role in cortical processing of visual input and externally oriented attention. Taken together, these findings support the current view of the brain functional segregation and integration in terms of modules and hubs, and provide a statistical approach to extract new information on the (re)organizational mechanisms in healthy and diseased brains.
Library & Digital Technologies : What are the challenges & the role to play ?
Creators: name: Mooc Scinum
name: Pouille, Hélène
Publisher: name: figshare
Year: 2017
Subjects: subject: Library and Information Studies
subject: FOS: Media and communications
subject: 160511 Research, Science and Technology Policy
subject: FOS: Political science
subject: Science Policy

description: Graphics from the "MOOC Digital Technologies and research in health and life sciences"

MOOC
Syllabus here
Additional file 5: of Global study of holistic morphological effectors in the budding yeast Saccharomyces cerevisiae
Creators: name: Suzuki, Godai
name: Wang, Yang
name: Kubo, Karen
name: Hirata, Eri
name: Ohnuki, Shinsuke
name: Ohya, Yoshikazu
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Figure S3. Distribution of non-essential deletion mutants with fitness defects. Dark gray and light gray boxes indicate mutants of non-essential genes with significantly slower growth and normal growth, respectively (left axis). Vertical solid red line indicates FDRâ =â 0.01. Blue curved line indicates normal distribution fitted to the wild type (right axis). (PDF 117Â kb)
title: L'aristocratie celte à la fin de l'âge du Fer (Collection "Bibracte", 5, notice)
Creators: name: Decourt, Jean-Claude
name: Perrin, Frank
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2023

description: Résumé et sommaire. L'intégralité de la publication sera bientôt accessible sur OpenEdition.
Supplementary Figures and Tables from The wing pattern of Moerarchis Durrant, 1914 (Lepidoptera: Tineidae) clarifies transitions between predictive models
Creators: name: Schachat, Sandra R.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: 170299 Cognitive Science not elsewhere classified
subject: FOS: Psychology
subject: 179999 Psychology and Cognitive Sciences not elsewhere classified
subject: 60801 Animal Behaviour
subject: FOS: Biological sciences

description: The evolution of wing pattern in Lepidoptera is a popular area of inquiry but few studies have examined microlepidoptera, with fewer still focusing on intraspecific variation. The tineid genus Moerarchis Durrant, 1914 includes two species with high intraspecific variation of wing pattern. A subset of the specimens examined here provide the first examples of wing patterns that follow both the ‘alternating wing-margin’ and ‘uniform wing-margin’ models in different regions along the costa. These models can also be evaluated along the dorsum of Moerarchis, where a similar transition between the two models can be seen. Fusion of veins is shown not to effect wing pattern, in agreement with previous inferences that the plesiomorphic location of wing veins constrains the development of colour pattern. The significant correlation between wing length and number of wing pattern elements in M. australasiella shows that wing size can act as a major determinant of wing pattern complexity. Lastly, some M. australasiella specimens have wing patterns that conform entirely to the ‘uniform wing-margin’ model and contain more than six bands, providing new empirical insight into the century-old question of how wing venation constrains wing patterns with seven or more bands.
Figure S2 from A statistical model for brain networks inferred from large-scale electrophysiological signals
Creators: name: Obando, Catalina
name: Fallani, Fabrizio De Vico
Publisher: name: The Royal Society
Year: 2017
Subjects: Computational Biology

description: Network science has been extensively developed to characterize structural properties of complex systems, including brain networks inferred from neuroimaging data. As a result of the inference process, networks estimated from experimentally obtained biological data, represent one instance of a larger number of realizations with similar intrinsic topology. A modelling approach is therefore needed to support statistical inference on the bottom-up local connectivity mechanisms influencing the formation of the estimated brain networks. Here, we adopted a statistical model based on exponential random graphs (ERGM) to reproduce brain networks, or connectomes, estimated by spectral coherence between high-density electroencephalographic (EEG) signals. ERGMs are made up by different local graph metrics, whereas the parameters weight the respective contribution in explaining the observed network. We validated this approach in a dataset of N = 108 healthy subjects during eyes-open (EO) and eyes-closed (EC) resting-state conditions. Results showed that the tendency to form triangles and stars, reflecting clustering and node centrality, better explained the global properties of the EEG connectomes as compared to other combinations of graph metrics. In particular, the synthetic networks generated by this model configuration replicated the characteristic differences found in the real brain networks, with EO eliciting significantly higher segregation in the alpha frequency band (8–13 Hz) as compared to EC. Furthermore, the fitted ERGM parameter values provided complementary information showing that clustering connections are significantly more represented from EC to EO in the alpha range, but also in the beta band (14–29 Hz), which is known to play a crucial role in cortical processing of visual input and externally oriented attention. Taken together, these findings support the current view of the brain functional segregation and integration in terms of modules and hubs, and provide a statistical approach to extract new information on the (re)organizational mechanisms in healthy and diseased brains.
title: 01_0975
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
Additional file 6: of Global study of holistic morphological effectors in the budding yeast Saccharomyces cerevisiae
Creators: name: Suzuki, Godai
name: Wang, Yang
name: Kubo, Karen
name: Hirata, Eri
name: Ohnuki, Shinsuke
name: Ohya, Yoshikazu
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Figure S4. Proportion of holistic and specific morphological mutants among mutants with and without growth defects. Right and left bar graphs indicate fractions of morphological phenotypes in mutants with slow and normal growth, respectively. Blue, green, and black bars indicate holistic morphological mutants, specific morphological mutants, and other mutants, respectively. The fraction of holistic morphological mutants was significantly higher in mutants with slow growth than in mutants with normal growth (p < 0.01 by Fisher’s exact test). (PDF 99 kb)
PD-L1 Testing in Urothelial Carcinoma: Analysis of a Series of 1401 Cases Using Both the 22C3 and SP142 Assays
Creators: name: Evans, Harriet
name: O’Sullivan, Brendan
name: Hughes, Frances
name: Charles, Kathryn
name: Robertson, Lee
name: Taniere, Philippe
name: Diaz-Cano, Salvador J.
Publisher: name: figshare
Year: 2022
Subjects: subject: 111201 Cancer Cell Biology
subject: FOS: Clinical medicine
subject: 111202 Cancer Diagnosis
subject: 111204 Cancer Therapy (excl. Chemotherapy and Radiation Therapy)
subject: 110799 Immunology not elsewhere classified
subject: 110705 Humoural Immunology and Immunochemistry
subject: 111207 Molecular Targets
subject: 111299 Oncology and Carcinogenesis not elsewhere classified
subject: 110316 Pathology (excl. Oral Pathology)

description: Immune checkpoint blockade (ICB) drugs are a novel, effective treatment for advanced urothelial carcinoma. Worldwide, several different ICB drugs are approved, each developed and clinically validated with a specific PD-L1 compound diagnostic assay. As a result, PD-L1 testing workflows in routine practice are complex: requiring multiple assays across two platforms, with each assay having a different method of interpretation. Our service tested 1,401 urothelial carcinoma cases for PD-L1 expression, using both the 22C3 PharmDx assay (required prior to Pembrolizumab therapy) and SP142 assay (required prior to Atezolizumab therapy). Of the 1,401 cases tested, 621 cases (44%) were tested with both the 22C3 PharmDx and SP142 assays, 492 cases (35%) with 22C3 PharmDx only, and 288 cases (21%) with SP142 only. Each assay was used and interpreted according to the manufacturer’s guidelines. The rate of positivity we observed was 26% with the 22C3 assay and 31% with the SP142 assay, similar to the pre-licensing studies for both drugs. The discrepancy observed between the assays was 11%, which reinforces the requirement for utilisation of the correct assay for each agent, and limits potential cross-utility of assays. This aspect must be considered when setting up a PD-L1 testing strategy in laboratories where both Pembrolizumab and Atezolizumab are available for the treatment of urothelial carcinoma but also has broader implications for testing of other cancers where multiple ICB drugs and their respective assays are approved.
Additional file 7: of Global study of holistic morphological effectors in the budding yeast Saccharomyces cerevisiae
Creators: name: Suzuki, Godai
name: Wang, Yang
name: Kubo, Karen
name: Hirata, Eri
name: Ohnuki, Shinsuke
name: Ohya, Yoshikazu
Publisher: name: figshare
Year: 2018
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Developmental Biology

description: Figure S5. Relationships with gene features. (A) Pearson’s product-moment correlation coefficients between holistic morphological abnormality and each gene feature. (B) Pearson’s product-moment correlation coefficients between fitness defect and each gene feature. (C) Pearson’s product-moment correlation coefficients between specific morphological abnormality and each gene feature. (D) Partial correlation coefficients between holistic morphological abnormality and each gene feature that controls fitness. Details of the gene features were previously described [26]. ** and * indicate p < 0.01 and p < 0.05, respectively, when testing for no correlation. Error bars indicate 95% confidential intervals. (PDF 8 kb)
Potassium incorporation and isotope fractionation in cultured scleractinian corals
Creators: name: Li, W.
name: Hu, Y.
name: Liu, X.-M.
name: Suzuki, A.
name: Wang, K.
name: Yoshimura, T.
Publisher: name: Elsevier B.V.
Year: 2022

description: Potassium (K) participates in coral biological activities and accumulates in their skeletons, driving the fractionation of stable K isotopes (41K/39K). Constraining the influences of biotic and abiotic controls on K isotope fractionation is important for interpreting coral records. However, the processes and mechanisms regulating K incorporation into coral skeletons and K isotope fractionation between seawater and coral skeletons remain unknown. Here, we combined isotopic and synchrotron-based spectroscopic analyses to evaluate the phase distribution and corresponding isotope variation of K in the skeleton of scleractinian (Porites australiensis) corals at a seawater temperature range from 20 to 29 °C in aquaria culture experiments. Potassium in coral skeletons exists mainly as organic-K (K hosted in soluble and insoluble organic matrices) and carbonate-K (K incorporated into K2CO3 and aragonite) phases of various proportions. Coral δ41K values vary substantially in both direction and magnitude from the modern seawater δ41K composition (∼0.12‰), showing marked deviations (Δ41KCoral-Sea) from −2.00 to 0.67‰. As seawater temperature increases, the organic-K fraction increases, whereas δ41KCoral decreases. The variation in δ41KCoral reflects the relative proportions of organic-bound K to carbonate-associated K. In most cases, coral intracrystalline organic matrices preferentially sequester isotopically lighter K whereas carbonate phases prefer heavier K. Distinguishable inter-colony difference in skeletal δ41K of corals growing under the same culturing conditions reveals the influence of physiological controls on K partitioning and isotope fractionation. Although calcification rate correlates with temperature to different degrees in the studied corals, likely reflecting control of the difference in zooxanthellae density, we infer that calcification rate is not a major controlling factor on skeletal δ41K. Rather, skeletal δ41K correlates closely with K phase partitioning, which is ascribed to temperature-sensitive physiological modulation.
Additional file 8: of Global study of holistic morphological effectors in the budding yeast Saccharomyces cerevisiae
Creators: name: Suzuki, Godai
name: Wang, Yang
name: Kubo, Karen
name: Hirata, Eri
name: Ohnuki, Shinsuke
name: Ohya, Yoshikazu
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Evolutionary Biology
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Figure S6. Distribution of genetic interactions. (A) Empirical cumulative distribution of the number of genetic interactions for each gene group. Blue, green, and black points indicate holistic morphological effectors, specific morphological effectors, and others, respectively. (B) Proportion of density of number of genetic interaction in each gene group described in a 100% stacked area chart. Blue, green, and black areas indicate holistic morphological effectors, specific morphological effectors, and others. The proportion for each number of genetic interactions was calculated from the density of genetic interactions for the corresponding gene. (PDF 1580Â kb)
Additional file 9: of Global study of holistic morphological effectors in the budding yeast Saccharomyces cerevisiae
Creators: name: Suzuki, Godai
name: Wang, Yang
name: Kubo, Karen
name: Hirata, Eri
name: Ohnuki, Shinsuke
name: Ohya, Yoshikazu
Publisher: name: figshare
Year: 2018
Subjects: subject: Cell Biology
subject: Molecular Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: Figure S7. Comparison of holistic morphological abnormality among singletons and duplicates of various types. Holistic morphological abnormality of singletons, heteromer small-scale duplicates (SSDs), other SSDs, heteromer ohnologs, and other ohnologs. Horizontal solid red lines indicate median values. Asterisk indicates a significant difference (p < 0.05 based on the Mann–Whitney U test after Bonferroni correction). (PDF 195 kb)
Software Development for Automated Design and Analysis for Hook of EOT Crane
Creators: name: Dhaval Patel
Publisher: name: figshare
Year: 2017
Subjects: subject: Mechanical Engineering
subject: FOS: Mechanical engineering

description: Material handling equipments are an eminent part of the human life. Cranes are amongst one of
the material handling equipment which finds wide applications in different fields of engineering.
The present work is an effort to develop software for carrying out automated design and analysis of
hook of EOT crane using Visual Basic 6 as platform. The software development involve mainly two
different activities, first one is the development of software for the automated design while the
second activity is to perform the detailed design and analysis of hook. For the development of the
user interface Visual Basic 6.0 has been used. The automated FE Analysis of this component have
been carried out by developing interface between the software and Finite Element Analysis package
Can we detect more ephemeral floods with higher density harmonized Landsat Sentinel 2 data compared to Landsat 8 alone?
Creators: name: Yin, S.
name: Stehman, S.V.
name: Mai, J.
name: Pavelsky, T.
name: Tulbure, M.G.
name: Broich, M.
name: Ju, J.
name: Perin, V.
name: Gaines, M.
name: Masek, J.G.
name: Betbeder-Matibet, L.
Publisher: name: Elsevier B.V.
Year: 2022

description: Spatiotemporal quantification of surface water and flooding is essential given that floods are among the largest natural hazards. Effective disaster response management requires near real-time information on flood extent. Satellite remote sensing is the only way of monitoring these dynamics across vast areas and over time. Previous water and flood mapping efforts have relied on optical time series, despite cloud contamination. This reliance on optical data is due to the availability of systematically acquired and easily accessible optical data globally for over 40 years. Prior research used either MODIS or Landsat data, trading either high temporal density but lower spatial resolution or lower cadence but higher spatial resolution. Both MODIS and Landsat pose limitations as Landsat can miss ephemeral floods, whereas MODIS misses small floods and inaccurately delineates flood edges. Leveraging high temporal frequency of 3–4 days of the existing Landsat-8 (L8) and two Sentinel-2 (S2) satellites combined, in this research, we assessed whether the increased temporal frequency of the three sensors improves our ability to detect surface water and flooding extent compared to a single sensor (L8 alone). Our study area was Australia's Murray-Darling Basin, one of the world's largest dryland basins that experiences ephemeral floods. We applied machine learning to NASA's Harmonized Landsat Sentinel-2 (HLS) Surface Reflectance Product, which combines L8 and S2 observations, to map surface water and flooding dynamics. Our overall accuracy, estimated from a stratified random sample, was 99%. Our user's and producer's accuracy for the water class was 80% (±3.6%, standard error) and 76% (±5.8%). We focused on 2019, one of the most recent years when all three HLS sensors operated at full capacity. Our results show that water area (permanent and flooding) identified with the HLS was greater than that identified by L8, and some short-lived flooding events were detected only by the HLS. Comparison with high resolution (3 m) PlanetScope data identified extensive mixed pixels at the 30 m HLS resolution, highlighting the need for improved spatial resolution in future work. The HLS has been able to detect floods in cases when one sensor (L8) alone was not, despite 2019 being one of the driest years in the area, with few flooding events. The dense optical time-series offered by the HLS data is thus critical for capturing temporally dynamic phenomena (i.e., ephemeral floods in drylands), highlighting the importance of harmonized data such as the HLS.
title: 01_0207
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
A soluble cyanide-bridged {Fe4Ni4} box encapsulating a Cs+ ion: synthesis, structure and electronic properties
Creators: name: Plamont, Remi
name: Tami, Jessica
name: Jimenez, Juan-Ramon
name: Benchohra, Amina
name: Khaled, Omar
name: Gontard, Geoffrey
name: Li, Yanling
name: Lescouëzec, Rodrigue
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: Physical Sciences not elsewhere classified
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Marine Biology
subject: Mental Health

description: Cyanide coordination clusters have received attention for their electronic and magnetic properties. Here, we synthesized a new octametallic cyanide box encapsulating a Cs+. The cationic complex Cs⊂[FeIII4(Tp)4NiII4(NMe2Tp)4(μ-CN)12]+ was crystallized as a BF4− salt and its structure reveals that the cesium ion interacts with the twelve cyanide edges. These interactions are likely responsible for the remarkable stability of the supramolecular assembly, which maintains its integrity in solution, as shown by NMR spectroscopy, mass spectrometry, and cyclic voltammetry experiments. The 1H NMR spectrum of 1 shows well-resolved signals, which are strongly shifted due to the paramagnetic nature of the cage. The encapsulated caesium ion is also affected by the paramagnetic cage and shows a strongly shifted 133Cs paramagnetic NMR signal. The {Fe4Ni4} box shows remarkable redox flexibility with five accessible oxidation states, which correspond to the reversible oxidation/reduction of the four FeIII/FeII ions. The separation of the four consecutive redox waves accounts for the occurrence of an efficient electronic communication between the metal ions through the cyanide bridges. The cyanide bridges are also efficient in transmitting a ferromagnetic interaction between the iron and nickel ions as shown by the magnetic properties.
A soluble cyanide-bridged {Fe4Ni4} box encapsulating a Cs+ ion: Synthesis, structure and electronic properties
Creators: name: Plamont, Remi
name: Tami, Jessica
name: Jimenez, Juan-Ramon
name: Benchohra, Amina
name: Khaled, Omar
name: Gontard, Geoffrey
name: Li, Yanling
name: Lescouezec, Rodrigue
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: Physical Sciences not elsewhere classified
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Evolutionary Biology
subject: Chemical Sciences not elsewhere classified
subject: Marine Biology
subject: Mental Health

description: Cyanide coordination clusters have received attention for their electronic and magnetic properties. Here, we synthesized a new octametallic cyanide box encapsulating a Cs+. The cationic complex Cs⊂[FeIII4(Tp)4NiII4(NMe2Tp)4(μ-CN)12]+ was crystallized as a BF4− salt and its structure reveals that the cesium ion interacts with the twelve cyanide edges. These interactions are likely responsible for the remarkable stability of the supramolecular assembly, which maintains its integrity in solution, as shown by NMR spectroscopy, mass spectrometry and cyclic voltammetry experiments. The 1H NMR spectrum of 1 shows well-resolved signals, which are strongly shifted due to the paramagnetic nature of the cage. The encapsulated cesium ion is also affected by the paramagnetic cage and shows a strongly shifted 133Cs paramagnetic NMR signal. The {Fe4Ni4} box shows remarkable redox flexibility with five accessible oxidation states, which correspond to the reversible oxidation/reduction of the four FeIII/FeII ions. The separation of the four consecutive redox waves accounts for the occurrence of an efficient electronic communication between the metal ions through the cyanide bridges. The cyanide bridges are also efficient in transmitting a ferromagnetic interaction between the iron and nickel ions as shown by the magnetic properties.
Supplementary materials from Combat biofouling with microscopic ridge-like surface morphology: a bioinspired study
Creators: name: Fu, Jimin
name: Zhang, Hua
name: Guo, Zhenbin
name: Feng, Dan-qing
name: Thiyagarajan, Vengatesen
name: Yao, Haimin
Publisher: name: The Royal Society
Year: 2018

description: Pull-off forces of different attachment configurations and culture of the tubeworm larvae
Supporing Information from Synergistic adhesion mechanisms of spider capture silk
Creators: name: Guo, Yang
name: Chang, Zheng
name: Guo, Hao-Yuan
name: Fang, Wei
name: Li, Qun-Yang
name: Zhao, Hong-Ping
name: Feng, Xi-Qiao
name: Gao, Huajian
Publisher: name: The Royal Society
Year: 2018

description: Experimental method
Poker Glossary
Creators: name: Palomäki, Jussi
name: Lappi, Otto
name: Laakasuo, Michael
Publisher: name: figshare
Year: 2017
Subjects: subject: Applied Psychology
subject: 170299 Cognitive Science not elsewhere classified
subject: FOS: Psychology
subject: 170202 Decision Making

description: Poker glossary to be used with various articles
Supporting Information from Elucidation of the hierarchical structure of natural eumelanins
Creators: name: Xiao, Ming
name: Chen, Wei
name: Li, Weiyao
name: Zhao, Jiuzhou
name: Hong, You-lee
name: Nishiyama, Yusuke
name: Miyoshi, Toshikazu
name: Shawkey, Matthew D.
name: Dhinojwala, Ali
Publisher: name: The Royal Society
Year: 2018

description: Eumelanin is one of the most ubiquitous pigments in living organisms and plays an important role in colouration and UV protection. Because eumelanin is highly cross-linked and insoluble in solvents, the chemical structure is still not completely known. In this study, we used atomic force microscopy, X-ray photoelectron spectroscopy and solid-state NMR to compare intact eumelanosomes (pigment granules mostly made of eumelanin) from four phylogentically distant species: cuttlefish (Sepia officinalis) inks, black coloured fish crow (Corvus ossifragus) feathers, iridescent wild turkey (Melleagris gallopavo) feathers and black coloured human hair. We found that eumelanosomes from all four species are composed of subunit nanoparticles with a length of 10–60 nm, consistent with earlier observations in eumelanosomes from the sepia ink and human hair. The solid-state NMR results indicate the presence of quinone methide tautomers in all four eumelanins. We also found clear differences in the UV absorbance, the ratio of 5,6-dihydroxyindole-2-carboxylic acid/5,6-dihydroxyindole and protonated aryl carbon ratios in sepia eumelanin relative to the other three. This comparison of natural eumelanin across a phylogenetically broad group of organisms provides insights into the change in the eumelanin structure over the evolutionary history and enables the production of synthetic eumelanin with properties that are similar to natural eumelanin.