cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Sensitivity analysis of grain surface chemistry to binding energies of ice species
Creators: name: Penteado, E M
name: Walsh, C
name: Cuppen, H M
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Advanced telescopes, such as ALMA and JWST, are likely to show that the chemical universe may be even more complex than currently observed, requiring astrochemical modelers to improve their models to account for the impact of new data. However, essential input information for gas-grain models, such as binding energies of molecules to the surface, have been derived experimentally only for a handful of species, leaving hundreds of species with highly uncertain estimates. We present in this paper a systematic study of the effect of uncertainties in the binding energies on an astrochemical two-phase model of a dark molecular cloud, using the rate equations approach. A list of recommended binding energy values based on a literature search of published data is presented. Thousands of simulations of dark cloud models were run, and in each simulation a value for the binding energy of hundreds of species was randomly chosen from a normal distribution. Our results show that the binding energy of H$_{2}$ is critical for the surface chemistry. For high binding energy, H$_{2}$ freezes out on the grain forming an H$_{2}$ ice. This is not physically realistic and we suggest a change in the rate equations. The abundance ranges found are in reasonable agreement with astronomical ice observations. Pearson correlation coefficients revealed that the binding energy of HCO, HNO, CH$_{2}$, and C correlate most strongly with the abundance of dominant ice species. Finally, the formation route of complex organic molecules was found to be sensitive to the branching ratios of H$_{2}$CO hydrogenation.
description: 18 pages, 8 figures, published in ApJ
Additional file 2 of Genome-wide development of insertion-deletion (InDel) markers for Cannabis and its uses in genetic structure analysis of Chinese germplasm and sex-linked marker identification
Creators: name: Pan, Gen
name: Li, Zheng
name: Huang, Siqi
name: Tao, Jie
name: Shi, Yaliang
name: Chen, Anguo
name: Li, Jianjun
name: Tang, Huijuan
name: Chang, Li
name: Deng, Yong
name: Li, Defang
name: Zhao, Lining
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2. Table S2. The primers used for screenning of sex-linked InDel markers. Table S3. The genetic admixture of 115 cultivars. Fig. S1 The physical location of 84 InDel primers on Cannabis chromosome used in this study. Fig. S2. Amplification products from 96 Cannabis cultivars using the InDel markers CS-I1–2.
Sterile neutrinos in the Milky Way: Observational constraints
Creators: name: Riemer-Sorensen, Signe
name: Hansen, Steen H.
name: Pedersen, Kristian
Publisher: name: arXiv
Year: 2006
Subjects: subject: Astrophysics (astro-ph)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We consider the possibility of constraining decaying dark matter by looking out through the Milky Way halo. Specifically we use Chandra blank sky observations to constrain the parameter space of sterile neutrinos. We find that a broad band in parameter space is still open, leaving the sterile neutrino as an excellent dark matter candidate.
description: Submitted to ApJL, 4 pages, 4 figures
title: 02_1318
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
On the bordification of outer space
Creators: name: Bux, Kai-Uwe
name: Smillie, Peter
name: Vogtmann, Karen
Publisher: name: arXiv
Year: 2017
Subjects: subject: Group Theory (math.GR)
subject: FOS: Mathematics
subject: 20E36, 20F65, 57M07

description: We give a simple construction of an equivariant deformation retract of Outer space which is homeomorphic to the Bestvina-Feighn bordification. This results in a much easier proof that the bordification is (2n-5)-connected at infinity, and hence that $Out(F_n)$ is a virtual duality group.
description: Accepted version, to appear in the Journal of the London MS. Section 7, giving the homeomorphism to the Bestvina-Feighn bordification, has been substantially revised
Mean Field Phase Diagram of SU(2)xSU(2) Lattice Higgs-Yukawa Model at Finite Lambda
Creators: name: Pryor, Craig
Publisher: name: arXiv
Year: 1996
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: The phase diagram of an SU(2)_L x SU(2)_R lattice Higgs-Yukawa model with finite lambda is constructed using mean field theory. The phase diagram bears a superficial resemblance to that for infinite lambda, however as lambda is decreased the paramagnetic region shrinks in size. For small lambda the phase transitions remain second order, and no new first order transitions are seen.
description: 9 pages, 3 postscript figures, RevTex. To appear in PRD
Designing a Federated Regional Centre for SKA Computing
Creators: name: Hughes-Jones, Richard
Publisher: name: Zenodo
Year: 2019

description: This paper describes the work done by the AENEAS project to develop a concept and design for a distributed, federated, European SKA Regional Centre (ESRC) to support the compute, storage, and networking that will be required to achieve the scientific goals of the Square Kilometre Array (SKA). The AENEAS (Advanced European Network of E-infrastructures for Astronomy with the SKA) project is a 3 year initiative funded by the Horizon 2020 program of the European Commission which started in 2017 and includes European, EC e-infrastructure, and Global partners. SKA is similar to LHC and Particle Physics in being a global collaboration of scientists and requiring world wide distributed computing infrastructure to extract the science from the data products produced by the telescopes; however the organisation of the SKA data and the computing required is quite different. The context will be set by briefly describing the data rates and types produced by the two telescopes that comprise the SKA, followed by an outline of the high-level requirements for the ESDC. Estimates of the scale of the computing and storage provide insight into how one might form a federated distributed compute and storage facility. The talk will cover the different data placement models that AENEAS has created, in collaboration with the SKA community, and how they influence the design and cost of the global data transfer and access networks that will support SKA. The talk will show how the computing and storage requirements for the ESRC have been estimated based on use cases and scenarios related to the different types of data products that SKA telescopes will produce. It will also cover how middleware infrastructure such as RUCIO might be used. The design aspects required to ensure user access to and interaction with the computing infrastructure and SKA data to provide SKA science outputs will be covered. A seamless Authentication and Authorization Infrastructure (AAI) and other federated services are required also for global interoperability. A set of data challenges have been undertaken by the SKA community and some of these will be presented to conclud the talk.
Direct-exchange duality of the Coulomb interaction and collective excitations in graphene in a magnetic field
Creators: name: Shizuya, K.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: In a magnetic field two-dimensional (2d) electron systems host, with quenched kinetic energy, a variety of many-body correlation phenomena, such as interaction-driven new states and associated collective excitations over them. In a magnetic field the two-body operators pertinent to the 2d Coulomb interaction obey a crossing relation, with which the Coulomb interaction is also cast into the form of manifest exchange interaction. It is shown that active use of this direct/exchange duality of the interaction allows one to develop, within the framework of the single-mode approximation, a new efficient algorithm for handling a wide class of collective excitations. The utility of our algorithm is demonstrated by studying some examples of inter- and intra-Landau-level collective excitations in graphene and in conventional electron systems.
description: 20 pages, 2 figures
Structurele en culturele integratie, generaties en onderwijsprestaties
Creators: name: Driessen, Geert
Publisher: name: Migrantenstudies
Year: 2010

description: De druk die wordt uitgeoefend op allochtonen om te integreren is de laatstejaren steeds groter geworden. Aanvankelijk gebeurde dat vooral vanuit depublieke opinie, maar nu ook steeds meer vanuit de politiek. Het adagium‘integratie met behoud van de eigen etnische identiteit’ heeft inmiddels plaatsgemaaktvoor de eisen van actieve participatie en assimilatie. Een goedeintegratie wordt niet alleen van belang geacht voor de immigranten zelf, maarmisschien meer nog voor hun kinderen. In deze bijdrage staan twee lijnencentraal: Welke relatie is er tussen de mate van integratie enerzijds en hetherkomstland en de generatie anderzijds? Welke relatie is er tussen de taal- enrekenprestaties enerzijds en het herkomstland, de generatie en de mate vanintegratie anderzijds? Voor de beantwoording van deze vragen is gebruikgemaaktvan gegevens die zijn verzameld bij de eerste meting van het COOL5-18cohortonderzoek in 2008. De informatie is afkomstig van ruim 9000 allochtoneen 16.000 autochtone kinderen en hun ouders. De resultaten laten zien dater sprake lijkt van een positieve ontwikkeling qua integratie en prestaties overgeneraties, maar dat er daarbij grote verschillen zijn tussen de onderscheidenherkomstgroepen, waarbij de Turken en Marokkanen minder vooruitgangboeken.
MOESM1 of Economic evaluation of health promotion interventions for older people: do applied economic studies meet the methodological challenges?
Creators: name: Huter, Kai
name: Dubas-Jakรณbczyk, Katarzyna
name: Kocot, Ewa
name: Kissimova-Skarbek, Katarzyna
name: Rothgang, Heinz
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Additional file 1: Table S1. Tabular summary of results. The table contains the results of the assessment of the four criteria specific for interventions targeting older people, some general characteristics and results of the general quality assessment of the studies included in the systematic review and its update.
Nuclear Spins in a Nanoscale Device for Quantum Information Processing
Creators: name: Ozdemir, S. K.
name: Miranowicz, A.
name: Ota, T.
name: Yusa, G.
name: Imoto, N.
name: Hirayama, Y.
Publisher: name: arXiv
Year: 2006
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Coherent oscillations between any two levels from four nuclear spin states of I=3/2 have been demonstrated in a nanometre-scale NMR semiconductor device, where nuclear spins are all-electrically controlled. Using this device, we discuss quantum logic operations on two fictitious qubits of the I=3/2 system, and propose a quantum state tomography scheme based on the measurement of longitudinal magnetization, $M_z$.
description: 5 pages, 4 figures
title: ADCO, Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome VIII, Cart. 192 (11 H 77), 295 folios, f. 0097v
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome VIII, Archives départementales de la Côte-d'Or, Cart. 192 (11 H 77), 295 folios, f. 0097v, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome VIII, Archives départementales de la Côte-d'Or, Cart. 192 (11 H 77), 295 folios, f. 0097v, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
A Gaussian mixture model representation of endmember variability in hyperspectral unmixing
Creators: name: Zhou, Yuan
name: Rangarajan, Anand
name: Gader, Paul D.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: Hyperspectral unmixing while considering endmember variability is usually performed by the normal compositional model (NCM), where the endmembers for each pixel are assumed to be sampled from unimodal Gaussian distributions. However, in real applications, the distribution of a material is often not Gaussian. In this paper, we use Gaussian mixture models (GMM) to represent the endmember variability. We show, given the GMM starting premise, that the distribution of the mixed pixel (under the linear mixing model) is also a GMM (and this is shown from two perspectives). The first perspective originates from the random variable transformation and gives a conditional density function of the pixels given the abundances and GMM parameters. With proper smoothness and sparsity prior constraints on the abundances, the conditional density function leads to a standard maximum a posteriori (MAP) problem which can be solved using generalized expectation maximization. The second perspective originates from marginalizing over the endmembers in the GMM, which provides us with a foundation to solve for the endmembers at each pixel. Hence, our model can not only estimate the abundances and distribution parameters, but also the distinct endmember set for each pixel. We tested the proposed GMM on several synthetic and real datasets, and showed its potential by comparing it to current popular methods.
description: Accepted by IEEE Transactions on Image Processing
Additional file 1: of Cross-sectional and longitudinal factors influencing physical activity of 65 to 75-year-olds: a pan European cohort study based on the survey of health, ageing and retirement in Europe (SHARE)
Creators: name: Lübs, Lena
name: Peplies, Jenny
name: Drell, Carina
name: Bammann, Karin
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Biotechnology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: “Prevalence rates (PR) of insufficient physical activity (IPA) of all participants in the age group 65 to 75 years at wave 4”. This file shows the prevalence rates of all participants of SHARE in the age group 65–75 years at wave 4 as a table. (DOCX 24 kb)
LArSoft and Future Framework Directions at Fermilab
Creators: name: Knoepfel, Kyle
name: Jones, Christopher
Publisher: name: Zenodo
Year: 2019

description: The diversity of the scientific goals across HEP experiments necessitates unique bodies of software tailored for achieving particular physics results. The challenge, however, is to identify the software that must be unique, and the code that is unnecessarily duplicated, which results in wasted effort and inhibits code maintainability. Fermilab has a history of supporting and developing software projects that are shared among HEP experiments. Fermilab's scientific computing division currently expends effort in maintaining and developing the LArSoft toolkit, used by liquid argon TPC experiments, as well as the event-processing framework technologies used by LArSoft, CMS, DUNE, and the majority of Fermilab-hosted experiments. As computing needs for DUNE and the HL-LHC become clearer, the computing models are being rethought. This talk will focus on Fermilab's plans for addressing the evolving software landscape as it relates to LArSoft and the event-processing frameworks, and how commonality among experiment software can be achieved while still supporting customizations necessary for a given experiment's physics goals.
Testing Gaussian random hypothesis with the cosmic microwave background temperature anisotropies in the three-year WMAP data
Creators: name: Chiang, Lung-Yih
name: Naselsky, Pavel D.
name: Coles, Peter
Publisher: name: arXiv
Year: 2006
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We test the hypothesis that the temperature of the cosmic microwave background is consistent with a Gaussian random field defined on the celestial sphere, using de-biased internal linear combination (DILC) map produced from the 3-year WMAP data. We test the phases for spherical harmonic modes with l <= 10 (which should be the cleanest) for their uniformity, randomness, and correlation with those of the foreground templates. The phases themselves are consistent with a uniform distribution, but not for l <= 5, and the differences between phases are not consistent with uniformity. For l=3 and l=6, the phases of the CMB maps cross-correlate with the foregrounds, suggestion the presence of residual contamination in the DLC map even on these large scales. We also use a one-dimensional Fourier representation to assemble a_lm into the ΔT_l(ϕ) for each l mode, and test the positions of the resulting maxima and minima for consistency with uniformity randomness on the unit circle. The results show significant departures at the 0.5% level, with the one-dimensional peaks being concentrated around ϕ=180 degs. This strongly significant alignment with the Galactic meridian, together with the cross-correlation of DILC phases with the foreground maps, strongly suggests that even the lowest spherical harmonic modes in the map are significantly contaminated with foreground radiation.
description: submitted to ApJL, one paragraph is added in Section 3 and some more in the Reference
Additional file 2: of Slow darkening of pinto bean seed coat is associated with significant metabolite and transcript differences related to proanthocyanidin biosynthesis
Creators: name: Kishor Duwadi
name: Austin, Ryan
name: Hemanta Mainali
name: Bett, Kirstin
name: FrĂŠdĂŠric Marsolais
name: Dhaubhadel, Sangeeta
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Figure S1. Estimated dispersion of all genes. Dispersion values (y-axis) plotted as a function of expression strength for each gene as returned by DESeq. (PDF 481Â kb)
Focusing on the Fixed Point of 4D Simplicial Gravity
Creators: name: Bialas, P.
name: Burda, Z.
name: Krzywicki, A.
name: Petersson, B.
Publisher: name: arXiv
Year: 1996
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: Our earlier renormalization group analysis of simplicial gravity is extended. A high statistics study of the volume and coupling constant dependence of the cumulants of the node distribution is carried out. It appears that the phase transition of the theory is of first order, contrary to what is generally believed.
description: Latex, 20 pages, 6 postscript figures, published version
Unattainable extended spacetime regions in conformal gravity
Creators: name: Chakrabarty, Hrishikesh
name: Benavides-Gallego, Carlos A.
name: Bambi, Cosimo
name: Modesto, Leonardo
Publisher: name: arXiv
Year: 2017
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The Janis-Newman-Winicour metric is a solution of Einstein's gravity minimally coupled to a real massless scalar field. The $γ$-metric is instead a vacuum solution of Einstein's gravity. These spacetimes have no horizon and possess a naked singularity at a finite value of the radial coordinate, where curvature invariants diverge and the spacetimes are geodetically incomplete. In this paper, we reconsider these solutions in the framework of conformal gravity and we show that it is possible to solve the spacetime singularities with a suitable choice of the conformal factor. Now curvature invariants remain finite over the whole spacetime. Massive particles never reach the previous singular surface and massless particles can never do it with a finite value of their affine parameter. Our results support the conjecture according to which conformal gravity can fix the singularity problem that plagues Einstein's gravity.
description: 1+10 pages, 2 figures. v2: refereed version
Decoherence vs entanglement in coined quantum walks
Creators: name: Maloyer, Olivier
name: Kendon, Viv
Publisher: name: arXiv
Year: 2006
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Quantum versions of random walks on the line and cycle show a quadratic improvement in their spreading rate and mixing times respectively. The addition of decoherence to the quantum walk produces a more uniform distribution on the line, and even faster mixing on the cycle by removing the need for time-averaging to obtain a uniform distribution. We calculate numerically the entanglement between the coin and the position of the quantum walker and show that the optimal decoherence rates are such that all the entanglement is just removed by the time the final measurement is made.
description: 11 pages, 6 embedded eps figures; v2 improved layout and discussion
Linear feature detection algorithm for astronomical surveys - II. Defocusing effects on meteor tracks
Creators: name: Bektešević, Dino
name: Vinković, Dejan
name: Rasmussen, Andrew
name: Ivezić, Željko
Publisher: name: arXiv
Year: 2017
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: Given the current limited knowledge of meteor plasma micro-physics and its interaction with the surrounding atmosphere and ionosphere, meteors are a highly interesting observational target for high-resolution wide-field astronomical surveys. Such surveys are capable of resolving the physical size of meteor plasma heads, but they produce large volumes of images that need to be automatically inspected for possible existence of long linear features produced by meteors. Here we show how big aperture sky survey telescopes detect meteors as defocused tracks with a central brightness depression. We derive an analytic expression for a defocused point source meteor track and use it to calculate brightness profiles of meteors modeled as uniform brightness disks. We apply our modeling to meteor images as seen by the SDSS and LSST telescopes. The expression is validated by Monte Carlo ray-tracing simulations of photons traveling through the atmosphere and the LSST telescope optics. We show that estimates of the meteor distance and size can be extracted from the measured FWHM and the strength of the central dip in the observed brightness profile. However, this extraction becomes difficult when the defocused meteor track is distorted by the atmospheric seeing or contaminated by a long lasting glowing meteor trail. The FWHM of satellites tracks is distinctly narrower than meteor values, which enables removal of a possible confusion between satellites and meteors.
description: submitted to MNRAS, 19 pages, 29 figures
Additional file 9: of RNA-Seq reveals the existence of a CDKN1C-E2F1-TP53 axis that is altered in human T-cell lymphoblastic lymphomas
Creators: name: López-Nieva, Pilar
name: Fernández-Navarro, Pablo
name: Vaquero-Lorenzo, Concepción
name: Villa-Morales, María
name: Graña-Castro, Osvaldo
name: Cobos-Fernández, María
name: López-Lorenzo, José
name: Llamas, Pilar
name: González-Sanchez, Laura
name: Sastre, Isabel
name: Pollan, Marina
name: Malumbres, Marcos
name: Santos, Javier
name: Fernández-Piqueras, José
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology

description: Table S7. Validation analysis by qRT-PCR of those miRNA significantly deregulated according with RNA-Seq analysis in the exploratory and extended cohort of T-LBL samples. (PDF 81 kb)
Modular supramolecular dimerization of optically tunable extended aryl viologens.
Creators: name: Olesińska, Magdalena
name: Wu, Guanglu
name: Gómez-Coca, Silvia
name: Antón-García, Daniel
name: Szabó, Istvan
name: Rosta, Edina
name: Scherman, Oren A
Publisher: name: Apollo - University of Cambridge Repository
Year: 2019

description: Cucurbit[8]uril (CB[8]) mediated assembly of extended aryl viologens (EVs) into optically tunable dimers is reported for the first time. We show that the modular design and synthesis of a new class of π-conjugated viologen derivatives with rigid aromatic or heteroaromatic bridging units as well as electron donating molecular recognition motifs enable their self-assembly into 2 : 2 complexes with CB[8]. The quantitative dimerization process involving these two molecular components in an aqueous solution enables excimer-like interactions between closely packed charged guests giving rise to distinct spectroscopic behavior. The nature of these dimers (CB[8]2·(EV[X]R)2) in the ground and excited states was characterized by NMR, isothermal titration calorimetry, and steady-state spectroscopic measurements.
A model for the metallicity evolution of damped Lyman-alpha systems
Creators: name: Johansson, P. H.
name: Efstathiou, G.
Publisher: name: arXiv
Year: 2006
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We apply a physically motivated stellar feedback model to analyse the statistical properties of damped Lyman-alpha systems (DLAs) expected in the concordance cold dark matter (CDM) model. Our feedback model produces extended low-metallicity cold gaseous discs around small galaxies. Since the space density of galaxies with low circular speeds is high, these discs dominate the cross-section for the identification of DLAs at all redshifts. The combined effects of star formation, outflows and infall in our models result in mild evolution of the N_{HI}-weighted metallicity content in DLAs with redshift, consistent with observations. According to our model, DLAs contribute only a small fraction of the volume averaged star formation rate at redshifts z \simlt 5. Our model predicts weak evolution in Omega_{HI} over the redshift range z=0-5. Furthermore, we show that the cosmological evolution of Omega_{HI} and the cosmic star formation rate are largely disconnected and conclude that the evolution of Omega_{HI} as a function of redshift is more likely to tell us about feedback processes and the evolution of the outer gaseous components of small galaxies than about the cosmic history of star formation.
description: 18 pages, 12 figures, accepted for publication in MNRAS (minor changes)
Salmo spp
Creators: name: Alexander, Timothy
name: Seehausen, Ole
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Salmoniformes
Salmonidae
Salmo

description: Species of trout (Salmo spp) were recorded in most lakes surveyed by Projet Lac. Salmo spp dominated the fish biomass in the littoral and benthic zones of the alpine lakes Sils and Poschiavo. In the perialpine lakes, trout were most frequently caught in the inflowing streams and rivers. In Zug, Hallwil, Lower Constance, Chalain and Lucerne trout were only caught in adjacent streams and rivers, and not in the lake itself. Large, silvery lake forms of Salmo trutta caught in the pelagic zone (“lake trout” sometimes called S. trutta forma lacustris) were most common in Lake Geneva, with some also caught in lakes Walen, Upper Constance, Brienz, Sarnen, Neuchatel, Morat, Saint-Point and Joux.
description: Published as part of Alexander, Timothy & Seehausen, Ole, 2021, Diversity, distribution and community composition of fish in perialpine lakes – " Projet Lac " synthesis report, Eawag: Swiss Federal Institute of Aquatic Science and Technology on page 135, DOI: 10.5281/zenodo.5779569
Testing logarithmic violations to scaling in strongly coupled QED
Creators: name: Azcoiti, V.
name: Di Carlo, G.
name: Galante, A.
name: Grillo, A. F.
name: Laliena, V.
name: Piedrafita, C. E.
Publisher: name: arXiv
Year: 1996
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: Using very precise measurements of the critical couplings for the chiral transition of non compact $QED_4$ with up to 8 flavours, we analyse the behaviour of the order parameter at the critical point using the equation of state of a logarithmically improved scalar mean field theory, that of the Nambu-Jona Lasinio theory and a pure power law. The first case is definitively excluded by the numerical data. The stability of the fits for the last two cases, as well as the behaviour with the number of flavours of the exponent of the logarithmic violations to the scaling favour clearly a pure power law scaling with non mean field exponents.
description: 6 pages, 3 postscript figures, 2 postscript tables (tar-ed, zip-ed, uu-encoded)
A >99.9%-fidelity quantum-dot spin qubit with coherence limited by charge noise
Creators: name: Yoneda, J.
name: Takeda, K.
name: Otsuka, T.
name: Nakajima, T.
name: Delbecq, M. R.
name: Allison, G.
name: Honda, T.
name: Kodera, T.
name: Oda, S.
name: Hoshi, Y.
name: Usami, N.
name: Itoh, K. M.
name: Tarucha, S.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Recent advances towards spin-based quantum computation have been primarily fuelled by elaborate isolation from noise sources, such as surrounding nuclear spins and spin-electric susceptibility, to extend spin coherence. In the meanwhile, addressable single-spin and spin-spin manipulations in multiple-qubit systems will necessitate sizable spin-electric coupling. Given background charge fluctuation in nanostructures, however, its compatibility with enhanced coherence should be crucially questioned. Here we realise a single-electron spin qubit with isotopically-enriched phase coherence time (20 microseconds) and fast electrical control speed (up to 30 MHz) mediated by extrinsic spin-electric coupling. Using rapid spin rotations, we reveal that the free-evolution dephasing is caused by charge (instead of conventional magnetic) noise featured by a 1/f spectrum over seven decades of frequency. The qubit nevertheless exhibits superior performance with single-qubit gate fidelities exceeding 99.9% on average. Our work strongly suggests that designing artificial spin-electric coupling with account taken of charge noise is a promising route to large-scale spin-qubit systems having fault-tolerant controllability.
title: ADCO, Grènetier de Cîteaux : comptes (1497-1504) (11 H 1172), f. 00517
Creators: name: de la Côte-d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2019
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Chartes de la Bourgogne du Moyen Âge
subject: comptes

description: Grènetier de Cîteaux : comptes (1497-1504), Archives départementales de la Côte-d'Or, (11 H 1172). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Grènetier de Cîteaux : comptes (1497-1504), Archives départementales de la Côte-d'Or, (11 H 1172), f. 00517, in Projet CBMA - Corpus Burgundiae Medii Aevi \[Ressource en ligne\], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Comment on ``Quantum Phase of Induced Dipoles Moving in a Magnetic Field''
Creators: name: Hagen, C. R.
Publisher: name: arXiv
Year: 1996
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: It has recently been suggested that an Aharonov-Bohm phase should be capable of detection using beams of neutral polarizable particles. A more careful analysis of the proposed experiment suffices to show, however, that it cannot be performed regardless of the strength of the external electric and magnetic fields.
description: 2 pages, latex file, no figures
Localizations at infinity and essential spectrum of quantum Hamiltonians: I. General theory
Creators: name: Georgescu, Vladimir
name: Iftimovici, Andrei
Publisher: name: arXiv
Year: 2005
Subjects: subject: Mathematical Physics (math-ph)
subject: Spectral Theory (math.SP)
subject: FOS: Physical sciences
subject: FOS: Mathematics
subject: 47A10, 81Q10 (Primary) 46L60, 46N50, 47L65, 47L90, 47L80 (Secondary)

description: We isolate a large class of self-adjoint operators H whose essential spectrum is determined by their behavior at large x and we give a canonical representation of their essential spectrum in terms of spectra of limits at infinity of translations of H. The configuration space is an arbitrary abelian locally compact not compact group.
description: 63 pages. This is the published version with several corrections
Comparative dataset of experimental and computational attributes of UV/vis absorption spectra.
Creators: name: Beard, Edward J
name: Sivaraman, Ganesh
name: Vázquez-Mayagoitia, Álvaro
name: Vishwanath, Venkatram
name: Cole, Jacqueline M
Publisher: name: Apollo - University of Cambridge Repository
Year: 2019

description: The ability to auto-generate databases of optical properties holds great prospects in data-driven materials discovery for optoelectronic applications. We present a cognate set of experimental and computational data that describes key features of optical absorption spectra. This includes an auto-generated database of 18,309 records of experimentally determined UV/vis absorption maxima, λmax, and associated extinction coefficients, ϵ, where present. This database was produced using the text-mining toolkit, ChemDataExtractor, on 402,034 scientific documents. High-throughput electronic-structure calculations using fast (simplified Tamm-Dancoff approach) and traditional (time-dependent) density functional theory were executed to predict λmax and oscillation strengths, f (related to ϵ) for a subset of validated compounds. Paired quantities of these computational and experimental data show strong correlations in λmax, f and ϵ, laying the path for reliable in silico calculations of additional optical properties. The total dataset of 8,488 unique compounds and a subset of 5,380 compounds with experimental and computational data, are available in MongoDB, CSV and JSON formats. These can be queried using Python, R, Java, and MATLAB, for data-driven optoelectronic materials discovery.
Type I-F CRISPR-Cas resistance against virulent phages results in abortive infection and provides population-level immunity.
Creators: name: Watson, Bridget N J
name: Vercoe, Reuben B
name: Salmond, George P C
name: Westra, Edze R
name: Staals, Raymond H J
name: Fineran, Peter C
Publisher: name: Apollo - University of Cambridge Repository
Year: 2019

description: Type I CRISPR-Cas systems are abundant and widespread adaptive immune systems in bacteria and can greatly enhance bacterial survival in the face of phage infection. Upon phage infection, some CRISPR-Cas immune responses result in bacterial dormancy or slowed growth, which suggests the outcomes for infected cells may vary between systems. Here we demonstrate that type I CRISPR immunity of Pectobacterium atrosepticum leads to suppression of two unrelated virulent phages, ɸTE and ɸM1. Immunity results in an abortive infection response, where infected cells do not survive, but viral propagation is severely decreased, resulting in population protection due to the reduced phage epidemic. Our findings challenge the view of CRISPR-Cas as a system that protects the individual cell and supports growing evidence of abortive infection by some types of CRISPR-Cas systems.
On Landauer's principle and bound for infinite systems
Creators: name: Longo, Roberto
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: Information Theory (cs.IT)
subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: Operator Algebras (math.OA)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences
subject: FOS: Mathematics
subject: 81P45, 94A17, 46L60, 81T05

description: Landauer's principle provides a link between Shannon's information entropy and Clausius' thermodynamical entropy. We set up here a basic formula for the incremental free energy of a quantum channel, possibly relative to infinite systems, naturally arising by an Operator Algebraic point of view. By the Tomita-Takesaki modular theory, we can indeed describe a canonical evolution associated with a quantum channel state transfer. Such evolution is implemented both by a modular Hamiltonian and a physical Hamiltonian, the latter being determined by its functoriality properties. This allows us to make an intrinsic analysis, extending our QFT index formula, but without any a priori given dynamics; the associated incremental free energy is related to the logarithm of the Jones index and is thus quantised. This leads to a general lower bound for the incremental free energy of an irreversible quantum channel which is half of the Landauer bound, and to further bounds corresponding to the discrete series of the Jones index. In the finite dimensional context, or in the case of DHR charges in QFT, where the dimension is a positive integer, our lower bound agrees with Landauer's bound.
description: Improved version with complete proofs included. 30 pages
Chiral Susceptibilities in noncompact QED: a new determination of the $γ$ exponent and the critical couplings
Creators: name: Azcoiti, V.
name: Di Carlo, G.
name: Galante, A.
name: Grillo, A. F.
name: Laliena, V.
name: Piedrafita, C. E.
Publisher: name: arXiv
Year: 1996
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: We report the results of a measurement of susceptibilities in noncompact $QED_4$ in $8^4, 10^4$ and $12^4$ lattices. Due to the potentialities of the $MFA$ approach, we have done simulations in the chiral limit which are therefore free from arbitrary mass extrapolations. Our results in the Coulomb phase show unambiguously that the susceptibility critical exponent $γ=1$ independently of the flavour symmetry group. The critical couplings extracted from these calculations are in perfect agreement with previous determinations based on the fermion effective action and plaquette energy, and outside the predictions of a logarithmically improved scalar mean field theory by eight standard deviations.
description: 11 pages, figures on request
On the evolution of the resonant planetary system HD128311
Creators: name: Sandor, Zsolt
name: Kley, Willy
Publisher: name: arXiv
Year: 2006
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: A significant number of the known multiple exoplanetary systems are containing a pair of giant planets engaged in a low order mean motion resonance. Such a resonant condition protects the dynamics of these planets resulting in very stable orbits. According to recent studies the capture into a resonance is the result of a planetary migration process induced by the interaction of the planets with a protoplanetary disk. If the migration is slow enough (adiabatic) next to a mean motion resonance, the two planets will also be in apsidal corotation. The recently refined orbital parameters of the system HD 128311 suggest that the two giant planets are in a 2:1 mean motion resonance, however without exhibiting apsidal corotation. Thus the evolution of this system can not be described by an adiabatic migration process alone. We present possible evolution scenarios of this system combining migration processes and sudden perturbations. We model migration scenarios through numerical integration of the gravitational N-body problem with additional non-conservative forces. Planet-planet scattering has been investigated by N-body simulations. We show that the present dynamical state of the system HD128311 may be explained by such evolutionary processes.
description: 4 Pages, 7 Figures, accepted for AA Letters
Connecting thermodynamic and dynamical anomalies of water-like liquid-liquid phase transition in the Fermi-Jagla model
Creators: name: Higuchi, Saki
name: Kato, Daiki
name: Awaji, Daisuke
name: Kim, Kang
Publisher: name: arXiv
Year: 2017
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: We present a study using molecular dynamics simulations based on the Fermi-Jagla potential model, which is the continuous version of the mono-atomic core-softened Jagla model [J. Y. Abraham, S. V. Buldyrev, and N. Giovambattista, J. Phys. Chem. B, 115, 14229 (2011)]. This model shows the water-like liquid-liquid phase transition between high-density and low-density liquids at the liquid-liquid critical point. In particular, the slope of the coexistence line becomes weakly negative, which is expected to represent one of anomalies of liquid polyamorphism. In this study, we examined the density, dynamic, and thermodynamic anomalies in the vicinity of the liquid-liquid critical point. The boundaries of density, self-diffusion, shear viscosity, and excess entropy anomalies were characterized. Furthermore, these anomalies are connected according to the Rosenfeld's scaling relationship between the excess entropy and the transport coefficients such as diffusion and viscosity. The results demonstrate the hierarchical and nested structures regarding the thermodynamic and dynamic anomalies of the Fermi-Jagla model.
description: 8 pages, 4 figures, 1 table, to appear in Journal of Chemical Physics
Luminescent conjugated oligothiophenes distinguish between α-synuclein assemblies of Parkinson's disease and multiple system atrophy.
Creators: name: Klingstedt, Therése
name: Ghetti, Bernardino
name: Holton, Janice L
name: Ling, Helen
name: Nilsson, K Peter R
name: Goedert, Michel
Publisher: name: Apollo - University of Cambridge Repository
Year: 2019
Subjects: Spectral analysis
Neurodegeneration
α-synuclein
Parkinson’s Disease
Multiple System Atrophy
Luminescent Conjugated Oligothiophene

description: Synucleinopathies [Parkinson's disease with or without dementia, dementia with Lewy bodies and multiple system atrophy] are neurodegenerative diseases that are defined by the presence of filamentous α-synuclein inclusions. We investigated the ability of luminescent conjugated oligothiophenes to stain the inclusions of Parkinson's disease and multiple system atrophy. They stained the Lewy pathology of Parkinson's disease and the glial cytoplasmic inclusions of multiple system atrophy. Spectral analysis of HS-68-stained inclusions showed a red shift in multiple system atrophy, but the difference with Parkinson's disease was not significant. However, when inclusions were double-labelled for HS-68 and an antibody specific for α-synuclein phosphorylated at S129, they could be distinguished based on colour shifts with blue designated for Parkinson's disease and red for multiple system atrophy. The inclusions of Parkinson's disease and multiple system atrophy could also be distinguished using fluorescence lifetime imaging. These findings are consistent with the presence of distinct conformers of assembled α-synuclein in Parkinson's disease and multiple system atrophy.