cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1 of Neutrophil-vascular interactions drive myeloperoxidase accumulation in the brain in Alzheimer’s disease
Creators: name: Smyth, Leon C. D.
name: Murray, Helen C.
name: Hill, Madison
name: van Leeuwen, Eve
name: Highet, Blake
name: Magon, Nicholas J.
name: Osanlouy, Mahyar
name: Mathiesen, Sophie N.
name: Mockett, Bruce
name: Singh-Bains, Malvindar K.
name: Morris, Vanessa K.
name: Clarkson, Andrew N.
name: Curtis, Maurice A.
name: Abraham, Wickliffe C.
name: Hughes, Stephanie M.
name: Faull, Richard L. M.
name: Kettle, Anthony J.
name: Dragunow, Mike
name: Hampton, Mark B.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Marine Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology
subject: 110309 Infectious Diseases

description: Additional file 1. Figure S1: MPO labelling is predominantly confined to neutrophils. Figure S2: Neutrophil accumulation is independent of sex, age, and post-mortem delay. Figure S3: Regional analysis of neutrophil accumulation in APP/PS1 mice. Figure S4: Amyloid-β1-42 does not induce NETosis in vitro. Figure S5: Specificity of antibody labelling across multiple rounds of multiplexed immunohistochemistry. Table S1: Case details of tissue used in tissue microarray and immunohistochemistry experiments. Table S2: Details of antibodies used for these studies.
Seeking Optimum System Settings for Physical Activity Recognition on Smartwatches
Creators: name: Ahmad, Muhammad
name: Khan, Adil Mehmood
name: Mazzara, Manuel
name: Distefano, Salvatore
Publisher: name: arXiv
Year: 2017
Subjects: subject: Computers and Society (cs.CY)
subject: FOS: Computer and information sciences

description: Physical activity recognition (PAR) using wearable devices can provide valued information regarding an individual's degree of functional ability and lifestyle. In this regards, smartphone-based physical activity recognition is a well-studied area. Research on smartwatch-based PAR, on the other hand, is still in its infancy. Through a large-scale exploratory study, this work aims to investigate the smartwatch-based PAR domain. A detailed analysis of various feature banks and classification methods are carried out to find the optimum system settings for the best performance of any smartwatch-based PAR system for both personal and impersonal models. To further validate our hypothesis for both personal (The classifier is built using the data only from one specific user) and impersonal (The classifier is built using the data from every user except the one under study) models, we tested single subject validation process for smartwatch-based activity recognition.
description: 15 pages, 2 figures, Accepted in CVC'19
SOCIAL MEDIA AND POLITICAL ACTIVISM IN SOUTHWEST NIGERIA: A CASE STUDY OF THE #ENDSARS MOVEMENT'S MOBILIZATION STRATEGIES
Creators: name: Abisoye, Ogunderu
name: Adebayo, Ola Afolaranmi, PhD
Publisher: name: SADI JOURNALS
Year: 2024
Subjects: social media, political activism, #EndSARS movement, Nigeria, mobilization, public opinion, challenges, limitations, implications

description: This study investigates the critical role of social media in the #EndSARS movement in Southwest Nigeria, specifically, in 2020. Using a quantitative approach and online survey data from 250 active participants, the research examines how social media facilitates information dissemination, mobilizes support, shape’s public opinion, and influences government response. The theoretical implications of digital activism and networked public frameworks are drawn, providing insights into the complex interplay between social media, political activism, and governance in Nigeria. Findings reveal that social media was instrumental in mobilizing and organizing the movement, enabling activists to disseminate information, coordinate protests, and build a sense of collective identity. Participants who actively used social media reported significantly higher levels of involvement in mobilization efforts. While social media played a crucial role in shaping public opinion, the study also highlighted challenges such as government censorship, misinformation, and online harassment. This research contributes to understanding social media’s potential for promoting democratic governance and social justice in Nigeria. The study underscores the importance of addressing the challenges and limitations associated with social media use in political mobilization, including the need for effective counter-narratives to combat misinformation
On the prevalence and magnitude of resurgence during delay and denial tolerance training
Creators: name: Marshall, Arielle R.
Publisher: name: No Publisher Supplied
Year: 2024

description: Resurgence is the recurrence of target behavior (e.g., severe destructive behavior) during a worsening of reinforcement conditions (e.g., increases in response effort or decreases in reinforcement rate for appropriate behavior). Previous studies have examined the prevalence and magnitude of resurgence of severe destructive behavior during functional communication training with discriminative stimuli (i.e., multiple schedules). We conducted a systematic review of the literature to analyze the magnitude and prevalence of treatment relapse during functional communication training with delay-and-denial tolerance training, including during shaping of the complex communication response, introduction of tolerance responses, and increases in delays. Similar to previous studies with discriminative stimuli, resurgence occurred in nearly all participants (87%) and in about one-third of transitions. Resurgence was less likely to occur during response-effort manipulations (i.e., complexity training, tolerance-response training) and was most likely to occur during increases in delays that ended following the passage of time rather than a response criterion. These results highlight the importance of further evaluation of resurgence across different applications of functional communication training.
Effect of methylation of adenine N6 on kink turn structure depends on location
Creators: name: Ashraf, Saira
name: Huang, Lin
name: Lilley, David M. J.
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology

description: N6-methyladenine is the most common covalent modification in cellular RNA species, with demonstrated functional consequences. At the molecular level this methylation could alter local RNA structure, and/or modulate the binding of specific proteins. We have previously shown that trans-Hoogsteen-sugar (sheared) A:G base pairs can be completely disrupted by methylation, and that this occurs in a sub-set ofD/D k-turn structures. In this work we have investigated to what extent sequence context affects the severity with which inclusion of N6-methyladenine into different A:G base pairs of a standard k-turn affects RNA folding and L7Ae protein binding. We find that local sequence has a major influence, ranging from complete absence of folding and protein binding to a relatively mild effect. We have determined the crystal structure of one of these species both free and protein-bound, showing the environment of the methyl group and the way the modification is accommodated into the k-turn structure.
Effect of methylation of adenine N6 on kink turn structure depends on location
Creators: name: Ashraf, Saira
name: Huang, Lin
name: M. J. Lilley, David
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology

description: N6-methyladenine is the most common covalent modification in cellular RNA species, with demonstrated functional consequences. At the molecular level this methylation could alter local RNA structure, and/or modulate the binding of specific proteins. We have previously shown that trans-Hoogsteen-sugar (sheared) A:G base pairs can be completely disrupted by methylation, and that this occurs in a sub-set ofD/D k-turn structures. In this work we have investigated to what extent sequence context affects the severity with which inclusion of N6-methyladenine into different A:G base pairs of a standard k-turn affects RNA folding and L7Ae protein binding. We find that local sequence has a major influence, ranging from complete absence of folding and protein binding to a relatively mild effect. We have determined the crystal structure of one of these species both free and protein-bound, showing the environment of the methyl group and the way the modification is accommodated into the k-turn structure.
Additional file 1 of Effect of appropriate dose, spectrum, and timing of antibiotics on 28-day mortality in patients with sepsis in the emergency department
Creators: name: Sanguanwit, Pitsucha
name: Monthonn, Chonpisit
name: Prachanukool, Thidathit
name: Suttapanit, Karn
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 1. ER Sepsis Protocol.
Repositories and Beyond: Analysis of Survey for SSHOC Organisations
Creators: name: Ala-Lahti, Henri
name: Mathers, Benjamin Jacob
name: L'Hours, Hervé
name: Kleemola, Mari
name: Alaterä, Tuomas J.
Publisher: name: Zenodo
Year: 2022
Subjects: Social Sciences and Humanities Open Cloud
SSHOC
SSH
social sciences
data integrity
metadata
social sciences and humanities
persistent identifiers
trusted digital repositories
data repositories
data preservation
certification
CoreTrustSeal

description: This report forms part of the overall body of work conducted by the SSHOC Task 8.2 Trust & Quality Assurance, Impact team which was tasked with examining the trust landscape of organisations participating in SSHOC and from the wider SSH domain. This report will examine the results of a survey targeted at organisations within the SSHOC community which offer services covering data and/or metadata. The survey was conducted in the summer of 2021. Areas examined by the survey include the type of data and/or metadata stored by the organisations, the support (and wider data) services offered by the organisations, certification status, data discovery provision and availability of repository information, amongst others. The results highlight the diversity of the trust landscape and illustrate the differences between SSH repositories and wider data service providers. The results also highlight potential differences between certified and non-certified repositories in the availability of policies and documentation. Differing interpretations of policies and the variation in the terminology related to data integrity suggests that further work is needed to achieve a community consensus on the definitions of services and service components and the minimum acceptable level of information that data-holding organisations should provide to users and other stakeholders. The plurality of data-holding organisations across the SSH landscape raises the issue of whether certification and/or assessment solutions are needed for wider data service providers that do not fit the ‘traditional data repository’ model, thus being ineligible for CoreTrustSeal certification.
Additional file 2 of Effect of appropriate dose, spectrum, and timing of antibiotics on 28-day mortality in patients with sepsis in the emergency department
Creators: name: Sanguanwit, Pitsucha
name: Monthonn, Chonpisit
name: Prachanukool, Thidathit
name: Suttapanit, Karn
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 2. Sepsis screening tool.
Additional file 1: of The impact of a private sector living wage intervention on consumption and cardiovascular disease risk factors in a middle income country
Creators: name: Rehkopf, David
name: Burmaster, Katharine
name: Landefeld, John
name: Adler-Milstein, Sarah
name: Flynn, Emily
name: Acevedo, Maria
name: Jones-Smith, Jessica
name: Adler, Nancy
name: Fernald, Lia
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology

description: Sensitivity analyses. Table S1, S2 and S3 and Figure S1. (DOCX 109 kb)
Direct measurement of the quantum state of photons in a cavity
Creators: name: Qin, Lupei
name: Wang, Zhong
name: Zhang, Cheng
name: Li, Xin-Qi
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We propose a scheme to measure the quantum state of photons in a cavity. The proposal is based on the concept of quantum weak values and applies equally well to both the solid-state circuit and atomic cavity quantum electrodynamics (QED) systems. The proposed scheme allows us to access directly the superposition components in Fock state basis, rather than the Wigner function as usual in phase space. Moreover, the separate access feature held in the direct scheme does not require a global reconstruction for the quantum state, which provides a particular advantage beyond the conventional method of quantum state tomography.
description: 6 pages, 2 figures
Application of poly(vinylphenyltrimethylammonium tribromide) resin as an efficient polymeric brominating agent in the α-bromination and α-bromoacetalization of acetophenones
Creators: name: Han, Bingbing
name: Zheng, Zubiao
name: Zheng, Dongcheng
name: Zhang, Lei
name: Cui, Peng
name: Shi, Jianjun
name: Li, Changjiang
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Plant Biology

description: The applications of a new supported tribromide reagent based on poly(vinylbenzyltrimethylammonium hydroxide) resin (Amberlite 717) were reported. This supported tribromide resin was used directly in α-bromination and α-bromoacetalization of acetophenones without any other catalyst under mild conditions. The effects of solvents and the amount of the supported tribromide resin on the reactions were investigated. Under the optimal conditions, most of α-bromo and α-bromoacetal of acetophenones were selectively obtained in excellent yields.
Tropical refined curve counting from higher genera and lambda classes
Creators: name: Bousseau, Pierrick
Publisher: name: arXiv
Year: 2017
Subjects: subject: Algebraic Geometry (math.AG)
subject: FOS: Mathematics

description: Block and Göttsche have defined a $q$-number refinement of counts of tropical curves in $\mathbb{R}^2$. Under the change of variables $q=e^{iu}$, we show that the result is a generating series of higher genus log Gromov-Witten invariants with insertion of a lambda class. This gives a geometric interpretation of the Block-Göttsche invariants and makes their deformation invariance manifest.
description: 70 pages, revised version, identical to the one published in Inven. Math
The future of machine learning within target identification: Causality, reversibility, and druggability
Creators: name: Taylor‐King, Jake P
name: Bronstein, Michael
name: Roblin, David
Publisher: name: The Francis Crick Institute
Year: 2024
Subjects: classificationCode: Chemical Biology & High Throughput
subject: Chemical Biology & High Throughput

description: To increase the rate of success within the drug development pipeline, the most effective strategy would be to improve the choice of nominated targets at the preclinical stages. Ironically, this is where machine learning has had only a modest application within biomedical science. Here, we outline an emerging strategy, advocated for by ourselves and others, leveraging diverse datasets and experiments across population and functional genetics, single cell technologies, and structural biology.
Additional file 1 of Proteomic signature of tubulointerstitial tissue predicts prognosis in IgAN
Creators: name: Paunas, Flavia Teodora Ioana
name: Finne, Kenneth
name: Leh, Sabine
name: Marti, Hans-Peter
name: Berven, Frode
name: Vikse, Bjørn Egil
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Statistics
subject: FOS: Mathematics
subject: 60506 Virology

description: Additional file 1: Supplemental Table 1. EMT proteins found in the dbEMT 2.0 database (http://dbemt.bioinfo-minzhao.org/download.cgi). Fold change and p-value for difference progressivevs non-progressive IgAN.
Numerical Solutions for Fuzzy Fractional Differential Equations Using Logarithmic and Harmonic Means
Creators: name: P, Prakash
name: N, Nithyadevi
Publisher: name: Zenodo
Year: 2023
Subjects: subject: Mathematics
subject: FOS: Mathematics

description: ABSTRACTFractional calculus is the study of the properties of integrals and derivatives of non-integer order.Fractional calculus evolved in the same way that classical calculus did. The concept of fractionaldifferential equations is expected to improve a selection of real-world applications, includingelectrical circuits, biology, biomechanics, electrochemistry, and electromagnetic processes. Basedon this the newly developed fractional differential equations have piqued the curiosity ofmathematicians and their applications, to the point that they are currently used in engineering todescribe a wide spectrum of physical and chemical processes. Understanding the qualitative andquantitative characteristics of complex physical phenomena necessitates the solution of nonlinearfractional differential equations in closed form (FDEs). Nonlinear themes include electricalengineering, mechanics, plasma physics, control theory, signal processing, finance, stochasticdynamical systems, and stochastic dynamical systems. In this study, we use a novel and extensibletechnique to analyse fuzzy fractional differential equations. The harmonic and logarithmic meanerror investigations are extensive. The results demonstrate that this approach can solve fuzzyfractional differential equations precisely.Keywords- Differential equations, Fuzzy fractional, Fuzzy numbers, Harmonic mean, Logarithmicmean
Meta-learners for Estimating Heterogeneous Treatment Effects using Machine Learning
Creators: name: Künzel, Sören R.
name: Sekhon, Jasjeet S.
name: Bickel, Peter J.
name: Yu, Bin
Publisher: name: arXiv
Year: 2017
Subjects: subject: Statistics Theory (math.ST)
subject: Methodology (stat.ME)
subject: FOS: Mathematics
subject: FOS: Computer and information sciences

description: There is growing interest in estimating and analyzing heterogeneous treatment effects in experimental and observational studies. We describe a number of meta-algorithms that can take advantage of any supervised learning or regression method in machine learning and statistics to estimate the Conditional Average Treatment Effect (CATE) function. Meta-algorithms build on base algorithms---such as Random Forests (RF), Bayesian Additive Regression Trees (BART) or neural networks---to estimate the CATE, a function that the base algorithms are not designed to estimate directly. We introduce a new meta-algorithm, the X-learner, that is provably efficient when the number of units in one treatment group is much larger than in the other, and can exploit structural properties of the CATE function. For example, if the CATE function is linear and the response functions in treatment and control are Lipschitz continuous, the X-learner can still achieve the parametric rate under regularity conditions. We then introduce versions of the X-learner that use RF and BART as base learners. In extensive simulation studies, the X-learner performs favorably, although none of the meta-learners is uniformly the best. In two persuasion field experiments from political science, we demonstrate how our new X-learner can be used to target treatment regimes and to shed light on underlying mechanisms. A software package is provided that implements our methods.
Additional file 1: of Measuring and stimulating progress on implementing widely recommended food environment policies: the New Zealand case study
Creators: name: Vandevijvere, Stefanie
name: Mackay, Sally
name: Swinburn, Boyd
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: 60506 Virology

description: Healthy Food Environment Policy Index (Food-EPI) tool and process. (DOCX 133 kb)
Additional file 1 of Trends in platelet count among cancer patients
Creators: name: Giannakeas, Vasily
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Medicine
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Table S1. Characteristics of cancer patient cohort. Figure S1. Median platelet count measured biweekly (and 3 period moving averages) among female patients diagnosed with (A) breast cancer, (B) colon cancer, (C) lung cancer, and (D) stomach cancer. Figure S2. Median platelet count measured biweekly (and 3 period moving averages) among male patients diagnosed with (A) prostate cancer, (B) colon cancer, (C) lung cancer, and (D)stomach cancer.
title: ADCO, Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Cart. 32 (G 136), 745 folios, f. 1078
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire
subject: LaMOP

description: Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Archives départementales de la Côte-d'Or, Cart. 32 (G 136), 745 folios, f. 1078, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Neuvième cartulaire de Saint-Étienne de Dijon (1661 - 1684), Archives départementales de la Côte-d'Or, Cart. 32 (G 136), 745 folios, f. 1078, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
Additional file 1 of Saliva collection via capillary method may underestimate arboviral transmission by mosquitoes
Creators: name: Gloria-Soria, A.
name: Brackney, D. E.
name: Armstrong, P. M.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 1: Text S1. Titration of viral stock solutions. Table S1. Sequence of primers and probes (5’ to 3’) used for viral detection in the RT-PCR assay. Table S2. Limit of detection of RT-PCR assay. Figure S1. RT-PCR standard curves for chikungunya (a), Zika (b), La Crosse (c) and West Nile (d) viruses.
MOESM2 of Optimizing anaerobic growth rate and fermentation kinetics in Saccharomyces cerevisiae strains expressing Calvin-cycle enzymes for improved ethanol yield
Creators: name: Papapetridis, Ioannis
name: Goudriaan, Maaike
name: Vitali, María Vázquez
name: Keijzer, Nikita
name: Broek, Marcel
name: Maris, Antonius
name: Pronk, Jack
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Additional file 2. Organic acid production in anaerobic bioreactor batch and chemostat cultures of S. cerevisiae strains constructed in this study. Cultures were grown on synthetic medium containing 20 g L−1 glucose (pH 5). Values represent averages ± mean deviations of measurements taken at the end of the fermentations in the case of batch cultures, and during steady-state in chemostat cultures. Batch cultures of IME324 and IMX1443 were performed in triplicate. Batch cultures of IMX774 were performed in quadruplicate and cultures of all other strains were performed in duplicate.
Heavy Baryon-Antibaryon Molecules in Effective Field Theory
Creators: name: Lu, Jun-Xu
name: Geng, Li-Sheng
name: Valderrama, Manuel Pavon
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: High Energy Physics - Lattice (hep-lat)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We discuss the effective field theory description of bound states composed of a heavy baryon and antibaryon. This framework is a variation of the ones already developed for heavy meson-antimeson states to describe the $X(3872)$ or the $Z_c$ and $Z_b$ resonances. We consider the case of heavy baryons for which the light quark pair is in S-wave and we explore how heavy quark spin symmetry constrains the heavy baryon-antibaryon potential. The one pion exchange potential mediates the low energy dynamics of this system. We determine the relative importance of pion exchanges, in particular the tensor force. We find that in general pion exchanges are probably non-perturbative for the $Σ_Q \barΣ_Q$, $Σ_Q^* \barΣ_Q$ and $Σ_Q^* \barΣ_Q^*$ systems, while for the $Ξ_Q' \barΞ_Q'$, $Ξ_Q^* \barΞ_Q'$ and $Ξ_Q^* \barΞ_Q^*$ cases they are perturbative If we assume that the contact-range couplings of the effective field theory are saturated by the exchange of vector mesons, we can estimate for which quantum numbers it is more probable to find a heavy baryonium state. The most probable candidates to form bound states are the isoscalar $Λ_Q \barΛ_Q$, $Σ_Q \barΣ_Q$, $Σ_Q^* \barΣ_Q$ and $Σ_Q^* \barΣ_Q^*$ and the isovector $Λ_Q \barΣ_Q$ and $Λ_Q \barΣ_Q^*$ systems, both in the hidden-charm and hidden-bottom sectors. Their doubly-charmed and -bottom counterparts ($Λ_Q Λ_Q$, $Λ_Q Σ_Q^{(*)}$, $Σ_Q^{(*)} Σ_Q^{(*)}$) are also good candidates for binding.
description: 38 pages, 1 figure, 12 tables; extended discussion on the most probable molecular heavy baryon-antibaryon states to bind; corresponds to published version
The Fulde-Ferrell-Larkin-Ovchinnikov state for ultracold fermions in lattice and harmonic potentials: a review
Creators: name: Kinnunen, Jami J.
name: Baarsma, Jildou E.
name: Martikainen, Jani-Petri
name: Törmä, Päivi
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Superconductivity (cond-mat.supr-con)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We review the concepts and the present state of theoretical studies of spin-imbalanced superfluidity, in particular the elusive Fulde-Ferrell-Larkin-Ovchinnikov (FFLO) state, in the context of ultracold quantum gases. The comprehensive presentation of the theoretical basis for the FFLO state that we provide is useful also for research on the interplay between magnetism and superconductivity in other physical systems. We focus on settings that have been predicted to be favourable for the FFLO state, such as optical lattices in various dimensions and spin-orbit coupled systems. These are also the most likely systems for near-future experimental observation of the FFLO state. Theoretical bounds, such as Bloch's and Luttinger's theorems, and experimentally important limitations, such as finite-size effects and trapping potentials, are considered. In addition, we provide a comprehensive review of the various ideas presented for the observation of the FFLO state. We conclude our review with an analysis of the open questions related to the FFLO state, such as its stability, superfluid density, collective modes and extending the FFLO superfluid concept to new types of lattice systems.
description: This is an author-created, un-copyedited version of an article published in Reports on Progress in Physics. IOP Publishing Ltd is not responsible for any errors or omissions in this version of the manuscript or any version derived from it. The Version of Record is available online at DOI:10.1088/1361-6633/aaa4ad
Additional file 1 of DNA methylation-based age acceleration observed in IDH wild-type glioblastoma is associated with better outcome—including in elderly patients
Creators: name: Bady, Pierre
name: Marosi, Christine
name: Weller, Michael
name: Grønberg, Bjørn H.
name: Schultz, Henrik
name: Taphoorn, Martin J. B.
name: Gijtenbeek, Johanna M. M.
name: van den Bent, Martin J.
name: von Deimling, Andreas
name: Stupp, Roger
name: Malmström, Annika
name: Hegi, Monika E.
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file. 1. Table S1.Description of full EORTC/NCIC & LN-Pilot and Nordic datasets. Table S2. DNA methylation associated with patient age. Table S3. Associations of methylation based entropy by genomic region and GBM classification. Table S4. Functional CpGs located on DDR genes, associated with Age Acceleration. Table S5. Functional CpGs located on DDR genes, associated with GBM classification. Fig. S1 Methylation-based classification of tumors of all patients from EORTC/NCIC & LN-Pilot and Nordic studies. Fig. S2 Impact of sample purity on measures of DNAm age acceleration, and HM entropy. Fig. S3 Pathways associated with functional methylation related to DNAm age acceleration and GBM classification. Fig. S4 CDKN2A CNV and DNAm age acceleration.
Polyquant CT: direct electron and mass density reconstruction from a single polyenergetic source
Creators: name: Mason, Jonathan H.
name: Perelli, Alessandro
name: Nailon, William H.
name: Davies, Mike E.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Medical Physics (physics.med-ph)
subject: FOS: Physical sciences

description: Quantifying material mass and electron density from computed tomography (CT) reconstructions can be highly valuable in certain medical practices, such as radiation therapy planning. However, uniquely parameterising the X-ray attenuation in terms of mass or electron density is an ill-posed problem when a single polyenergetic source is used with a spectrally indiscriminate detector. Existing approaches to single source polyenergetic modelling often impose consistency with a physical model, such as water--bone or photoelectric--Compton decompositions, which will either require detailed prior segmentation or restrictive energy dependencies, and may require further calibration to the quantity of interest. In this work, we introduce a data centric approach to fitting the attenuation with piecewise-linear functions directly to mass or electron density, and present a segmentation-free statistical reconstruction algorithm for exploiting it, with the same order of complexity as other iterative methods. We show how this allows both higher accuracy in attenuation modelling, and demonstrate its superior quantitative imaging, with numerical chest and metal implant data, and validate it with real cone-beam CT measurements.
description: 23 pages, 12 figures
Additional file 2: of Applying GRADE-CERQual to qualitative evidence synthesis findingsâ paper 4: how to assess coherence
Creators: name: Colvin, Christopher
name: Garside, Ruth
name: Wainwright, Megan
name: Munthe-Kaas, Heather
name: Glenton, Claire
name: Bohren, Meghan
name: Carlsen, Benedicte
name: ĂZge TunĂ§Alp
name: Noyes, Jane
name: Booth, Andrew
name: Rashidian, Arash
name: Flottorp, Signe
name: Lewin, Simon
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology

description: Open peer review reports. (PDF 98 kb)
Tissue-specific shaping of the TCR repertoire and antigen specificity of iNKT cells.
Creators: name: Jimeno, Rebeca
name: Lebrusant-Fernandez, Marta
name: Margreitter, Christian
name: Lucas, Beth
name: Veerapen, Natacha
name: Gurdyal S Besra
name: Fraternali, Franca
name: Spencer, Jo
name: Anderson, Graham
name: Barral, Patricia
Publisher: name: The Francis Crick Institute
Year: 2020
Subjects: subject: Model organisms
subject: Immunology
subject: FOS: Clinical medicine

description: Tissue homeostasis is critically dependent on the function of tissue-resident lymphocytes, including lipid-reactive invariant natural killer T (iNKT) cells. Yet, if and how the tissue environment shapes the antigen specificity of iNKT cells remains unknown. By analysing iNKT cells from lymphoid tissues of mice and humans we demonstrate that their T cell receptor (TCR) repertoire is highly diverse and is distinct for cells from various tissues resulting in differential lipid-antigen recognition. Within peripheral tissues iNKT cell recent thymic emigrants exhibit a different TCR repertoire than mature cells, suggesting that the iNKT population is shaped after arrival to the periphery. Consistent with this, iNKT cells from different organs show distinct basal activation, proliferation and clonal expansion. Moreover, the iNKT cell TCR repertoire changes following immunisation and is shaped by age and environmental changes. Thus, post-thymic modification of the TCR-repertoire underpins the distinct antigen specificity for iNKT cells in peripheral tissues.
Additional file 1: of The impact of financial incentives on physical activity in adults: a systematic review protocol
Creators: name: My-Linh Luong
name: Bennell, Kim
name: Hall, Michelle
name: Harris, Anthony
name: Hinman, Rana
Publisher: name: figshare
Year: 2018
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy
subject: Computational Biology

description: PRISMA-P 2015 Checklist. (DOCX 32Â kb)
Supplementary document for Burst-mode dual-comb spectroscopy - 5036076.pdf
Creators: name: Zhang, Yu
name: WEEKS, REAGAN
name: Lecaplain, Caroline
name: Harilal, Sivanandan
name: Yeak, Jeremy
name: Phillips, Mark
name: Jones, R. Jason
Publisher: name: Optica Publishing Group
Year: 2021
Subjects: Uncategorized

description: Dispersive dual-comb simulation and the expanded view of the labeled spectrum
Additional file 2 of Lipid and lipoprotein concentrations during pregnancy and associations with ethnicity
Creators: name: Waage, Christin W.
name: Mdala, Ibrahim
name: Stigum, Hein
name: Jenum, Anne Karen
name: Birkeland, Kåre I.
name: Shakeel, Nilam
name: Michelsen, Trond M.
name: Richardsen, Kåre R.
name: Sletner, Line
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Pharmacology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Cancer

description: Additional file 2: Figure S2. Causal diagram for the association between ethnicity and plasma lipid. S is defined as a binary selection variable. Our study participants have S=1. U = women included at different time points from early pregnancy to 14 weeks postpartum. The total effect of ethnicity on plasma lipids is found by adjusting for gestational week, education and age.
Additional file 1: Figure S1. of Next-Generation Theranostic Agents Based on Polyelectrolyte Microcapsules Encoded with Semiconductor Nanocrystals: Development and Functional Characterization
Creators: name: Nifontova, Galina
name: Zvaigzne, Maria
name: Baryshnikova, Maria
name: Korostylev, Evgeny
name: Ramos-Gomes, Fernanda
name: Alves, Frauke
name: Nabiev, Igor
name: Sukhanova, Alyona
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Schematic diagram of a theranostic agent based on polyelectrolyte microcapsules. Figure S2. Size distributions of calcium carbonate microparticles obtained at stirring rates of 250 (a), 500 (b), and 750-rpm (c). The stirring duration was 30 s in all cases. The size distribution diagrams are based on the measurements of individual microparticles (n = 350). The differences between samples a, b, and c are significant (p
The C.J.E.U. Case Law Relevant to the General Anti-Avoidance Rule (G.A.A.R.) Under the Anti-Tax Avoidance Directive (A.T.A.D.)
Creators: name: Kuźniacki, Błażej
Publisher: name: University of Bologna Law Review
Year: 2019
Subjects: subject: G.A.A.R.; A.T.A.D.; B.E.P.S.; C.J.E.U.; tax avoidance
subject: K34; H26; H21

description: This study concentrates on the Court of Justice of the European Union (CJEU) case law in order to reconstruct from it an interpretative guidance for the proper understanding and thus application of general anti-abuse rule included in Article 6 ATAD (the ATAD’s GAAR). Although Article 6 aims to harmonises general anti-abuse rule in the domain of tax law among all MSs, its wide scope and its phraseology raises a plethora of issues, in particular in respect of its proper – EU compatible – understating and thus application. The analysis of the relevant CJEU case law, as undertaken in this paper, will set a scene for the question of compatibility of the ATAD’s GAAR with the concept of abuse developed by the CJEU in cases regarding abusive practices of taxpayers. This piece aims to contribute in determining the reasonable understanding of the core elements of the ATAD’s GAAR in accordance with the EU primary law, as interpreted by the CJEU. This may provide the readers with a useful interpretative guideline to the ATAD’s GAAR, which could be of an assistance not only for tax authorities, but by all stakeholders, including taxpayers, courts, and MSs’ legislative bodies.
description: University of Bologna Law Review, Vol 4, No 2 (2019)
Party Laws and Party Nationalization: a Critique of Afghan Political Party Laws
Creators: name: Mobasher, M. Bashir
Publisher: name: University of Bologna Law Review
Year: 2019
Subjects: Party Laws; Party Nationalization; Constitution; Institutionalization; Elections

description: Afghan party laws have consistently discouraged ethnic parties and politics. Taking an implicit approach to party nationalization, the laws have set three qualification thresholds for parties: consisting of at least 10,000 members; having offices in at least 20 provinces; and having at least 35 founders, who represent a minimum of 20 provinces. Although these thresholds have not explicitly referred to the ethnic composition of political parties, they were indeed designed to encourage broad-based parties given the regional concentration of ethnic groups. Even so, these laws have failed to encourage cross-ethnic parties or coalitions. Afghan parties have remained fragmented, personalized, and ethnic-based. In fact, no cross-ethnic party has grown in Afghanistan. Although some cross-ethnic coalitions have emerged during elections, they have failed to institutionalize as stable and cohesive political forces. This paper shows that the failure of laws to encourage cross-ethnic parties and coalitions has been due to their command-and control nature (as compared to incentive-based) and the fact that the laws have failed to set a regulatory framework for the cross-ethnic coalitions that have emerged, particularly during the presidential elections.
description: University of Bologna Law Review, Vol 4, No 2 (2019)
An efficient synthesis of novel coumarinyldihydropyrimidin-2-thiones via coumarinylenones
Creators: name: Tyagi, Abhilash
name: Mahiya, Kuldeep
name: Kumar, Rajesh
name: Singh, Sukhdev
Publisher: name: Taylor & Francis
Year: 2023
Subjects: subject: Biophysics
subject: Biochemistry
subject: Physical Sciences not elsewhere classified
subject: Cell Biology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Virology

description: The novel coumarinyldihydropyrimidin-2-thiones (coumarinyl-DHPM) have been synthesized by Knoevenagel condensation of 4-formylcoumarins with different β-keto esters in the presence of aluminum chloride (AlCl3) as Lewis acid catalyst leading to coumarinylenones followed by cyclization with protected thiourea and subsequent deprotection of protected sulfur intermediate by trifluoroacetic acid. The structures of coumarinylenones, protected intermediate and the desired coumarinyl-DHPM were confirmed by their NMR and X-ray diffraction analysis.
E_n Jacobi forms and Seiberg-Witten curves
Creators: name: Sakai, Kazuhiro
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Algebraic Geometry (math.AG)
subject: Number Theory (math.NT)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: We discuss Jacobi forms that are invariant under the action of the Weyl group of type E_n (n=6,7,8). For n=6,7 we explicitly construct a full set of generators of the algebra of E_n weak Jacobi forms. We first construct n+1 independent E_n Jacobi forms in terms of Jacobi theta functions and modular forms. By using them we obtain Seiberg-Witten curves of type E_6 and E_7 for the E-string theory. The coefficients of each curve are E_n weak Jacobi forms of particular weights and indices specified by the root system, realizing the generators whose existence was shown some time ago by Wirthmüller.
description: 24 pages, 1 figure, v2: refined discussion in section 3, v3: published version
A Mistake of Natural Law: Sir William Blackstone and the Anglican Way
Creators: name: Stern, Craig A.
Publisher: name: University of Bologna Law Review
Year: 2019
Subjects: Blackstone; Natural Law; Roman Law; Anglicanism; Law and Religion

description: It is said that no book on the common law surpasses the importance of Sir William Blackstone’s Commentaries on the Laws of England. But it is also said that the Commentaries is of questionable merit, with aspects of it downright incoherent. The most fundamental element of the Commentaries to attract this disparaging characterization is its discussion and use of what it usually calls “the law of nature” — and what we these days usually call “natural law.” Does the Commentaries perpetrate a mistake — actually many mistakes — of natural law? This article answers that it is not the Commentaries, but rather its critics that perpetrate mistakes of natural law. The mistakes arise from the expectation that Blackstone’s natural law would take after Thomas Aquinas’s (or even Christopher St. German’s) natural law. But readers of the Commentaries who allow Blackstone his own way with natural law will find it a valuable treatment that animates the whole. Blackstone’s natural law owes much to two influences, Roman law and the Anglican Church. The second influence is the more distinctive and guides Blackstone’s response to the first. Both led Blackstone to view the natural law as an order immanent in human law, an order especially prominent within the common law. Seen in this light, natural law provides the foundation for the Commentaries and a foundation for understanding law in our own day.
description: University of Bologna Law Review, Vol 4, No 2 (2019)
Additional file 3: of Applying GRADE-CERQual to qualitative evidence synthesis findingsâ paper 6: how to assess relevance of the data
Creators: name: Noyes, Jane
name: Booth, Andrew
name: Lewin, Simon
name: Carlsen, Benedicte
name: Glenton, Claire
name: Colvin, Christopher
name: Garside, Ruth
name: Bohren, Meghan
name: Rashidian, Arash
name: Wainwright, Megan
name: ĂZge TunĎAlp
name: Chandler, Jacqueline
name: Flottorp, Signe
name: Pantoja, Tomas
name: Tucker, Joseph
name: Munthe-Kaas, Heather
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Science Policy
subject: Plant Biology
subject: FOS: Biological sciences

description: Open peer review reports. (PDF 133Â kb)
Matter growth in extended $Λ$CDM cosmology
Creators: name: Zimdahl, W.
name: Velten, H. E. S.
name: Algoner, W. C.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: On the basis of a previously established scalar-tensor extension of the $Λ$CDM model we develop an effective fluid approach for the matter growth function. This extended $Λ$CDM (henceforth $e_ΦΛ$CDM) cosmology takes into account deviations from the standard model both via a modified background expansion and by the inclusion of geometric anisotropic stresses as well as of perturbations of the geometric dark-energy equivalent. The background dynamics is governed by an explicit analytic expression for the Hubble rate in which modifications of the standard model are given in terms of a single constant parameter [1]. To close the system of fluid-dynamical perturbation equations we introduce two phenomenological parameters through which the anisotropic stress is related both to the total energy density perturbation of the cosmic substratum and to relative perturbations in the effective two-component system. We quantify the impact of deviations from the standard background, of anisotropic stresses and of non-vanishing perturbations of the effective dark-energy component on the matter growth rate function $f σ_8$ and confront the results with recent redshift-space distortion (RSD) measurements.