Additional file 1 of Characterization and analysis of multi-organ full-length transcriptomes in Sphaeropteris brunoniana and Alsophila latebrosa highlight secondary metabolism and chloroplast RNA editing pattern of tree ferns
Creators: name: Peng, Yang
name: Wang, Zhen
name: Li, Minghui
name: Wang, Ting
name: Su, Yingjuan
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 1: Fig S1. Statistics of Nr annotations of S. brunoniana (top ten). (a)Root. (b)Rachis. (C)Pinna. Fig S2. Structural prediction of three-organ full-length transcriptomes of A. latebrosa. (a) The quantity of lncRNAs in three organs. (b) Transcription factor family distribution (top ten). (c) Distribution of SSR motifs. The X axis represents the SSR motif units, i.e., the number of repeating bases. The Y axis represents the number of repetitions of the bases, where the specific repetition count corresponds to the colors mentioned in the legend. The Z axis represents the number of SSRs. Fig S3. Enrichment results of KEGG expression up-regulated genes in S. brunoniana pinna (compared with root and rachis) (top twenty). The significantly enriched pathways with corrected p-value (q value) &lt; 0.05 were shown. Number indicates the size of the dot, describing the number of unigenes enriched in the pathway. The color bar represents the q value and indicates significance of the enrichment. Fig S4. Enrichment results of KEGG expression up-regulated genes in S. brunoniana root (compared with root and rachis) (top twenty). The significantly enriched pathways with corrected p-value (q value) &lt; 0.05 were shown. Number indicates the size of the dot, describing the number of unigenes enriched in the pathway. The color bar represents the q value and indicates significance of the enrichment. Fig S5. Enrichment results of KEGG expression up-regulated genes in S. brunoniana rachis (compared with root and rachis) (top twenty). The significantly enriched pathways with corrected p-value (q value) &lt; 0.05 were shown. Number indicates the size of the dot, describing the number of unigenes enriched in the pathway. The color bar represents the q value and indicates significance of the enrichment. Fig S6. Enrichment results of KEGG expression up-regulated genes in A. latebrosa pinna (compared with root and rachis) (top twenty). The significantly enriched pathways with corrected p-value (q value) &lt; 0.05 were shown. Number indicates the size of the dot, describing the number of unigenes enriched in the pathway. The color bar represents the q value and indicates significance of the enrichment. Fig S7. Enrichment results of KEGG expression up-regulated genes in A. latebrosa root (compared with root and rachis) (top twenty). The significantly enriched pathways with corrected p-value (q value) &lt; 0.05 were shown. Number indicates the size of the dot, describing the number of unigenes enriched in the pathway. The color bar represents the q value and indicates significance of the enrichment. Fig S8. Enrichment results of KEGG expression up-regulated genes in A. latebrosa rachis (compared with root and rachis) (top twenty). The significantly enriched pathways with corrected p-value (q value) &lt; 0.05 were shown. Number indicates the size of the dot, describing the number of unigenes enriched in the pathway. The color bar represents the q value and indicates significance of the enrichment.