Extensive phenotype data and machine learning in prediction of mortality in acute coronary syndrome – the MADDEC study
Creators: name: A. Hernesniemi, Jussi
name: Mahdiani, Shadi
name: Tynkkynen, Juho A.
name: Lyytikäinen, Leo-Pekka
name: Mishra, Pashupati P.
name: Lehtimäki, Terho
name: Eskola, Markku
name: Nikus, Kjell
name: Antila, Kari
name: Oksala, Niku
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Medicine
subject: Biotechnology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics

description: <b>Objective:</b> Investigation of the clinical potential of extensive phenotype data and machine learning (ML) in the prediction of mortality in acute coronary syndrome (ACS). <b>Methods:</b> The value of ML and extensive clinical data was analyzed in a retrospective registry study of 9066 consecutive ACS patients (January 2007 to October 2017). Main outcome was six-month mortality. Prediction models were developed using two ML methods, logistic regression and extreme gradient boosting (xgboost). The models were fitted in training set of patients treated in 2007–2014 and 2017 (81%, <i>n</i> = 7344) and validated in a separate validation set of patients treated in 2015–2016 with full GRACE score data available for comparison of model accuracy (19%, <i>n</i> = 1722). <b>Results:</b> Overall, six-month mortality was 7.3% (<i>n</i> = 660). Several variables were found to be significantly associated with six-month mortality by both ML methods. The xgboost scored the best performance: AUC 0.890 (0.864–0.916). The AUC values for logistic regression and GRACE score were 0.867(0.837–0.897) and 0.822 (0.785–0.859), respectively. The AUC value of xgboost was better when compared to logistic regression (<i>p</i> = .012) and GRACE score (<i>p</i> <b>Conclusions:</b> The use of extensive phenotype data and novel machine learning improves prediction of mortality in ACS over traditional GRACE score.KEY MESSAGESThe collection of extensive cardiovascular phenotype data from electronic health records as well as from data recorded by physicians can be used highly effectively in prediction of mortality after acute coronary syndrome.Supervised machine learning methods such as logistic regression and extreme gradient boosting using extensive phenotype data significantly outperform conventional risk assessment by the current golden standard GRACE score.Integration of electronic health records and the use of supervised machine learning methods can be easily applied in a single centre level to model the risk of mortality. The collection of extensive cardiovascular phenotype data from electronic health records as well as from data recorded by physicians can be used highly effectively in prediction of mortality after acute coronary syndrome. Supervised machine learning methods such as logistic regression and extreme gradient boosting using extensive phenotype data significantly outperform conventional risk assessment by the current golden standard GRACE score. Integration of electronic health records and the use of supervised machine learning methods can be easily applied in a single centre level to model the risk of mortality.