cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Forecasting Publications’ Success Using Machine Learning Prediction Models
Creators: name: Alchokr, Rand
name: Haider, Rayed
name: Shakeel, Yusra
name: Leich, Thomas
name: Saake, Gunter
name: Krüger, Jacob
Publisher: name: CEUR-WS
Year: 2024
Subjects: Bibliometric
alternative metrics
machine learning
computer science

description: Measuring the success and impact of a scientific publication is an important, thus controversial matter. Despite all the criticism, it is widespread that citation counts is considered a popular indication of a publication‘s success. Therefore, in this paper, we use a machine learning framework to test the ability of alternative metrics (altmetrics) to predict the future impact of papers reflected in the citation counts. To achieve the experiment, we extracted 7,588 papers from 10 computer science journals. To build the feature space for the prediction problem, 14 different altmetric indices were collected, 3 feature selection approaches, namely, Variance threshold, Pearson’s Correlation, and Mutual information method, were used to minimize the feature space and rank the features according to their contribution to the original dataset. To identify the classification performance of these features, three classifiers were used: Decision Tree, Random Forest, and Support Vector Machines. According to the experimental data, altmetrics can predict future citations and the most useful altmetrics indications are social media count, tweets, news count, capture count, and full-text view, with Random Forest outperforming the other classifiers.
title: ADCO, Ordre cistercien : comptes (1403-1423) (11 H 1161), f. 00084
Creators: name: de la Côte-d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2019
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Chartes de la Bourgogne du Moyen Âge
subject: comptes
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi

description: Ordre cistercien : comptes (1403-1423), Archives départementales de la Côte-d'Or, (11 H 1161). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Ordre cistercien : comptes (1403-1423), Archives départementales de la Côte-d'Or, (11 H 1161), f. 00084, in Projet CBMA - Corpus Burgundiae Medii Aevi \[Ressource en ligne\], https:// manuscrits.cbma-project.eu/
Additional file 2: of Genomic epidemiology and population structure of Neisseria gonorrhoeae from remote highly endemic Western Australian populations
Creators: name: Barakat Al Suwayyid
name: Coombs, Geoffrey
name: Speers, David
name: Pearson, Julie
name: Wise, Michael
name: Kahler, Charlene
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Table S2. WA N. gonorrhoeae isolates metadata, antimicrobial resistance profiles, sequence types and genetic characteristics of antimicrobial resistance markers. (PDF 95 kb)
Magnetic and Electronic Properties of Spin-Orbit Coupled Dirac Electrons on a $(001)$ Thin Film of Double Perovskite Sr$_2$FeMoO$_6$
Creators: name: Yamada, Masahiko G.
name: Jackeli, George
Publisher: name: arXiv
Year: 2017
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We present an interacting model for the electronic and magnetic behavior of a strained $(001)$ atomic layer of Sr$_2$FeMoO$_6,$ which shows room-temperature ferrimagnetism and magnetoresistance with potential spintronics application in the bulk. We find that the strong spin-orbit coupling in the molybdenum 4$d$ shell gives rise to a robust ferrimagnetic state with an emergent spin-polarized electronic structure consisting of flat bands and four massive or massless Dirac dispersions. Based on the spin-wave theory, we demonstrate that the magnetic order remains intact for a wide range of doping, leading to the possibility of exploring flat band physics, such as Wigner crystallization in electron-doped Sr$_{2-x}$La$_{x}$FeMoO$_6.$
description: 7 pages, 4 figures
Bilateral multifactor CES general equilibrium with state-replicating Armington elasticities
Creators: name: Kim, Jiyoung
name: Nakano, Satoshi
name: Nishimura, Kazuhiko
Publisher: name: arXiv
Year: 2017
Subjects: subject: General Economics (econ.GN)
subject: FOS: Economics and business

description: We measure elasticity of substitution between foreign and domestic commodities by two-point calibration such that the Armington aggregator can replicate the two temporally distant observations of market shares and prices. Along with the sectoral multifactor CES elasticities which we estimate by regression using a set of disaggregated linked input--output observations, we integrate domestic production of two countries, namely, Japan and the Republic of Korea, with bilateral trade models and construct a bilateral general equilibrium model. Finally, we make an assessment of a tariff elimination scheme between the two countries.
Magnetic modeling of inflated low-mass stars using interior fields no larger than ~10 kilogauss
Creators: name: MacDonald, James
name: Mullan, D. J.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We have previously reported on models of low-mass stars in which the presence of inflated radii is ascribed to magnetic fields which impede the onset of convection (e.g. MacDonald & Mullan [2017a] and citations therein). Some of our magneto-convection models have been criticized because, when they were first reported by Mullan & MacDonald (2001), the deep interior fields were found to be very large (50-100 MG). Such large fields are now known to be untenable. For example, Browning et al. (2016) used stability arguments to suggest that interior fields in low-mass stars cannot be larger than ~1 MG. Moreover, 3D models of turbulent stellar dynamos suggest that fields generated in low-mass interiors may be not much stronger than 10-20 kG (Browning 2008). In the present paper, we present magneto-convective models of inflated low-mass stars in which the interior fields are not permitted to be stronger than 10 kG. These models are used to fit empirical data for 15 low-mass stars for which precise masses and radii have been measured. We show that our 10 kG magneto-convective models can replicate the empirical radii and effective temperatures for 14 of the stars. In the case of the remaining star (in the Praesepe cluster), two different solutions have been reported in the literature. We find that one of these solutions (by Gillen et al. 2017) can be fitted well with our model using the nominal age of Praesepe (800 Myr). However, the second solution (by Kraus et al. 2017) cannot be fitted unless the star's age is assumed to be much younger (~ 150 Myr).
description: Accepted by Ap J
SN 2014C: VLBI Images of a Supernova Interacting with a Circumstellar Shell
Creators: name: Bietenholz, Michael F.
name: Kamble, A.
name: Margutti, R.
name: Milisavljevic, D.
name: Soderberg, A.
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: We report on VLBI measurements of supernova 2014C at several epochs between $t = 384$ and 1057 days after the explosion. SN 2014C was an unusual supernova that initially had Type Ib optical spectrum, but after $t = 130$ d it developed a Type IIn spectrum with prominent H$α$ lines, suggesting the onset of strong circumstellar interaction. Our first VLBI observation was at $t = 384$ d, and we find that the outer radius of SN 2014C was $(6.40 \pm 0.26) \times 10^{16}$ cm (for a distance of 15.1 Mpc), implying an average expansion velocity of $19300 \pm 790$ \kms\ up to that time. At our last epoch, SN 2014C was moderately resolved and shows an approximately circular outline but with an enhancement of the brightness on the W side. The outer radius of the radio emission at $t = 1057$ d is $(14.9 \pm 0.6) \times 10^{16}$ cm. We find that the expansion between $t = 384$ and 1057 d is well described by a constant velocity expansion with $v = 13600 \pm 650$ \kms. SN 2014C had clearly been substantially decelerated by $t = 384$ d. Our measurements are compatible with a scenario where the expanding shock impacted upon a shell of dense circumstellar material during the first year, as suggested by the observations at other wavelengths, but had progressed through the dense shell by the time of the VLBI observations.
description: 9 pages, 4 figures, accepted to MNRAS. This version adds the changes made in response to the referee's comments
Additional file 2: of Systematic comparative validation of self-report measures of sedentary time against an objective measure of postural sitting (activPAL)
Creators: name: S. Chastin
name: M. Dontje
name: D. Skelton
name: I. ÄUkiÄ
name: R. Shaw
name: J. Gill
name: C. Greig
name: C. Gale
name: I. Deary
name: G. Der
name: P. Dall
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Medicine
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Bland and Altman plots. (PDF 439Â kb)
Differential requirements for cyclase-associated protein (CAP) in actin-dependent processes of Toxoplasma gondii.
Creators: name: Hunt, Alex
name: Russell, Matthew Robert Geoffrey
name: Wagener, Jeanette
name: Kent, Robyn
name: Carmeille, Romain
name: Peddie, Christopher
name: Collinson, Lucy
name: Heaslip, Aoife
name: Ward, Gary E
name: Treeck, Moritz
Publisher: name: The Francis Crick Institute
Year: 2020
Subjects: subject: Biochemistry & Proteomics
subject: Imaging
subject: Cell Biology
subject: Infectious Disease
subject: Immunology
subject: FOS: Clinical medicine
subject: Computational & Systems Biology

description: Toxoplasmagondii contains a limited subset of actin binding proteins. Here we show that the putative actin regulator cyclase-associated protein (CAP) is present in two different isoforms and its deletion leads to significant defects in some but not all actin dependent processes. We observe defects in cell-cell communication, daughter cell orientation and the juxtanuclear accumulation of actin, but only modest defects in synchronicity of division and no defect in the replication of the apicoplast. 3D electron microscopy reveals that loss of CAP results in a defect in formation of a normal central residual body, but parasites remain connected within the vacuole. This dissociates synchronicity of division and parasite rosetting and reveals that establishment and maintenance of the residual body may be more complex than previously thought. These results highlight the different spatial requirements for F-actin regulation in Toxoplasma which appear to be achieved by partially overlapping functions of actin regulators.
Additional file 1: of Genomic epidemiology and population structure of Neisseria gonorrhoeae from remote highly endemic Western Australian populations
Creators: name: Barakat Al Suwayyid
name: Coombs, Geoffrey
name: Speers, David
name: Pearson, Julie
name: Wise, Michael
name: Kahler, Charlene
Publisher: name: figshare
Year: 2018
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: Table S1. Sequencing and assembly quality statistics of the 59 Western Australian N. gonorrhoeae isolates. (PDF 63 kb)
Kähler Uniformization from Holographic Renormalization Group Flows of M5-branes
Creators: name: Fluder, Martin
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Analysis of PDEs (math.AP)
subject: Differential Geometry (math.DG)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: In this paper, we initiate the study of holographic renormalization group flows acting on the metric of four-manifolds. In particular, we derive a set of equations which govern the evolution of a generic Kähler four-manifold along the renormalization group flow in seven-dimensional gauged supergravity. The physical eleven-dimensional M-theory setup is given by a stack of M5-branes wrapping a calibrated Kähler four-cycle inside a Calabi-Yau threefold. By topologically twisting the theory in the ultraviolet, we may choose an arbitrary Kähler metric on the four-cycle as an asymptotic boundary condition. Along the renormalization group flow, the metric moduli are largely washed out, and at the infrared fixed point we will reach a Kähler-Einstein metric, which is the expected uniformization behavior.
description: 42 pages; v2: clarified some statements and updated references, published version
Beyond trans-dimensional RJMCMC with a case study in impulsive data modeling
Creators: name: Karakuş, Oktay
name: Kuruoğlu, Ercan E.
name: Altınkaya, Mustafa A.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Signal Processing (eess.SP)
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: Reversible jump Markov chain Monte Carlo (RJMCMC) is a Bayesian model estimation method which has been used for trans-dimensional sampling. In this study, we propose utilization of RJMCMC beyond trans-dimensional sampling. This new interpretation, which we call trans-space RJMCMC, reveals the undiscovered potential of RJMCMC by exploiting the original formulation to explore spaces of different classes or structures. This provides flexibility in using different types of candidate classes in the combined model space such as spaces of linear and nonlinear models or of various distribution families. As an application for the proposed method, we have performed a special case of trans-space sampling, namely trans-distributional RJMCMC in impulsive data modeling. In many areas such as seismology, radar, image, using Gaussian models is a common practice due to analytical ease. However, many noise processes do not follow a Gaussian character and generally exhibit events too impulsive to be successfully described by the Gaussian model. We test the proposed method to choose between various impulsive distribution families to model both synthetically generated noise processes and real-life measurements on power line communications (PLC) impulsive noises and 2-D discrete wavelet transform (2-D DWT) coefficients.
description: 22 pages, 9 figures
Tunable Acoustic Valley-Hall Edge States in Reconfigurable Phononic Elastic Waveguides
Creators: name: Liu, Ting-Wei
name: Semperlotti, Fabio
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: This study investigates the occurrence of acoustic topological edge states in a 2D phononic elastic waveguide due to a phenomenon that is the acoustic analogue of the quantum valley Hall effect. We show that a topological transition takes place between two lattices having broken space inversion symmetry due to the application of a tunable strain field. This condition leads to the formation of gapless edge states at the domain walls, as further illustrated by the analysis of the bulk-edge correspondence and of the associated topological invariants. Although time reversal symmetry is still intact in these systems, the edge states are topologically protected when inter-valley mixing is either weak or negligible. Interestingly, topological edge states can also be triggered at the boundary of a single domain if boundary conditions are properly selected. We also show that the static modulation of the strain field allows tuning the response of the material between the different supported edge states.
description: 9 pages, 13 figures
Additional file 1: of Systematic comparative validation of self-report measures of sedentary time against an objective measure of postural sitting (activPAL)
Creators: name: S. Chastin
name: M. Dontje
name: D. Skelton
name: I. ÄUkiÄ
name: R. Shaw
name: J. Gill
name: C. Greig
name: C. Gale
name: I. Deary
name: G. Der
name: P. Dall
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Medicine
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Marine Biology
subject: Science Policy

description: List of sedentary behavior questionnaires mapped on the TASST taxonomy. (PDF 285Â kb)
Hasse-Witt and Cartier-Manin matrices: A warning and a request
Creators: name: Achter, Jeffrey D.
name: Howe, Everett W.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Number Theory (math.NT)
subject: Algebraic Geometry (math.AG)
subject: FOS: Mathematics
subject: 11G20 (Primary) 14G17 (Secondary)

description: Let X be a curve in positive characteristic. A Hasse--Witt matrix for X is a matrix that represents the action of the Frobenius operator on the cohomology group H^1(X,O_X) with respect to some basis. A Cartier--Manin matrix for X is a matrix that represents the action of the Cartier operator on the space of holomorphic differentials of X with respect to some basis. The operators that these matrices represent are adjoint to one another, so Hasse--Witt matrices and the Cartier--Manin matrices are related to one another, but there seems to be a fair amount of confusion in the literature about the exact nature of this relationship. This confusion arises from differences in terminology, from differing conventions about whether matrices act on the left or on the right, and from misunderstandings about the proper formulae for iterating semilinear operators. Unfortunately, this confusion has led to the publication of incorrect results. In this paper we present the issues involved as clearly as we can, and we look through the literature to see where there may be problems. We encourage future authors to clearly distinguish between Hasse--Witt and Cartier--Manin matrices, in the hope that further errors can be avoided.
description: Corrected version; an error in Section 2.5 has been fixed
title: Paratexte_Conseiller pratique illustré, manuel de poche du cycliste amateur
Creators: name: AmateurS
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020

description: ID_PARA_00091
title: ADCO, Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome I, Cart. 185 (11 H 70), f. 0227r
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome I, Archives départementales de la Côte-d'Or, Cart. 185 (11 H 70), f. 0227r, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome I, Archives départementales de la Côte-d'Or, Cart. 185 (11 H 70), f. 0227r, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
title: Πολιτιστική διπλωματία
title: Ελληνικές και διεθνείς διαστάσεις
titleType: AlternativeTitle
Creators: name: Vasileiadis, Nikolaos
name: Boutsiouki, Sofia
Publisher: name: Kallipos, Open Academic Editions
Year: 2016
Subjects: ΠΟΛΙΤΙΣΜΟΣ
ΔΙΠΛΩΜΑΤΙΑ
ΕΞΩΤΕΡΙΚΗ ΠΟΛΙΤΙΚΗ
ΟΥΝΕΣΚΟ
ΣΥΜΒΟΥΛΙΟ ΤΗΣ ΕΥΡΩΠΗΣ
ΕΥΡΩΠΑΪΚΗ ΕΝΩΣΗ
ΔΙΑΘΡΗΣΚΕΙΑΚΟΣ ΔΙΑΛΟΓΟΣ
ΔΙΑΠΟΛΙΤΙΣΜΙΚΟΣ ΔΙΑΛΟΓΟΣ
Culture
Diplomacy
Foreign Policy
UNESCO
Council Of Europe
European Union
Interreligious Dialogue
Intercultural Dialogue

description: Το σύγγραμμα επιχειρεί μία ιχνηλάτηση της σημασίας της Πολιτιστικής Διπλωματίας, όπως αυτή συναρτάται με την άσκηση της ελληνικής εξωτερικής πολιτικής, στα πλαίσια των διεθνών σχέσεων και των διεθνςών οργανισμών. Στο πρώτο μέρος θα αναλυθεί η έννοια της πολιτιστικής διπλωματίας και θα επιχειρηηθε η αναδίφηση τηςί ιστορικής της εξέλιξη, καθώς και η ανάλυση του περιεχομένου και των φορέων της. Στην συνέχεια θα δοθεί ιδιαίτερη έμφαση στην Ελληνική διμερή πολιτιστική διπλωματία και πως αυτή ασκείται ( Υπ.Εξ., Υπουργείο Τουρισμού, Υπουργείο Παιδείας, Οικουμενικό Πατριαρχείο κ.ο.κ.) ενώ θα γίνει μια ενδεικτική αναφορά στην πολιτιστική διπλωματία άλλων κρατών (π.χ. Γαλλία, ΗΠΑ, Γερμανία, Ηνωμένο Βασίλειο κ.ο.κ.).
Στο δεύτερο μέρος του συγγράμματος θα παρατεθεί ανάλυση που θα αφορά την πολυμερή πολιτιστική διπλωματία και τους οργανισμούς και τα φόρα στα πλαίσια των οποίων αυτή ασκείται. Θα αναδειχθεί η σχέση της πολιτιστικής διπλωματίας και της θρησκείας, ενώ, επίσης, θα ιχνηλατηθούν οι πολιτικές, οικονομικές και κοινωνικές όψεις της πολιτιστικής διπλωματίας. Επί τω τέλει, θα αναδειχθεί ο ρόλος της UNESCO, της ΕΕ και του Συμβουλίου της Ευρώπης, αλλά και άλλων θεσμών στο πεδίο αυτών όπως ο Πολιτιστικός διάλογος Ευρώπης-Ασίας(ASEM). υ Εν κατακλείδι, το προτεινόμενο σύγγραμμα θα πραγματευτεί ζητήματα που αφορούν το διεθνές περιβάλλον και τις σύγχρονες προκλήσεις, την σύγκρουση των πολιτισμών αλλά και τον διαπολιτισμικό και διαθρησκευτικό διάλογο.
Probing the neutrino mass ordering with KM3NeT-ORCA: Analysis and perspectives
Creators: name: Capozzi, Francesco
name: Lisi, Eligio
name: Marrone, Antonio
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: The discrimination of the two possible options for the neutrino mass ordering (normal or inverted) is a major goal for current and future neutrino oscillation experiments. Such goal might be reached by observing high-statistics energy-angle spectra of events induced by atmospheric neutrinos and antineutrinos propagating in the Earth matter. Large volume water-Cherenkov detectors envisaged to this purpose include the so-called KM3NeT-ORCA project (in seawater) and the IceCube-PINGU project (in ice). Building upon a previous work focused on PINGU, we study in detail the effects of various systematic uncertainties on the ORCA sensitivity to the mass ordering, for the reference configuration with 9 m vertical spacing. We point out the need to control spectral shape uncertainties at the percent level, the effects of better priors on the theta-23 mixing parameter, and the benefits of an improved flavor identification in reconstructed ORCA events.
description: 15 pages, including 7 figures. A few paragraphs and references added. Invited contribution to appear in the JPG Focus Issue on "Neutrino Mass and Mass Ordering"
Additional file 1: of Treatment outcomes of tuberculosis patients under directly observed treatment short-course at Debre Tabor General Hospital, northwest Ethiopia: nine-years retrospective study
Creators: name: Seble Worku
name: Awoke Derbie
name: Mekonnen, Daniel
name: Fantahun Biadglegne
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Multilingual abstract in the five official working languages of the United Nations. (PDF 512 kb)
Taking Research to the Nextflow Level
Creators: name: Milton, Michael
Publisher: name: Zenodo
Year: 2024
Subjects: Analytics
Tools
Software
Infrastructure
Data

description: How can a small eResearch platform level up their institute s computational workloads? At WEHI s Research Computing Platform (RCP), our goal is to make research as easy as possible. In 2022, one important area that needed improvement was in the area of bioinformatics workflows. Researchers needed an easy way to orchestrate large scale analyses, handle software dependencies, efficiently utilize the Slurm cluster, share their workflows with non-technical users and monitor workflow errors. This talk will discuss how we achieved all this using the Nextflow workflow manager.

Improving Nextflow support was a gradual and organic process. One early milestone was configuring Nextflow for our Slurm HPC cluster, while another was the introduction of Nextflow training. The next large step came with a workflow engine comparison, where Nextflow won RCP s endorsement for new workflows.

With this in place, we started a program of helping researchers adapt their pipelines from other frameworks and from ad hoc scripts. We will discuss a number of these workflow uplifts, with notable examples from WEHI s Advanced Genomics Facility.
The introduction of Seqera Platform in 2023 broadened the userbase of our Nextflow pipelines, which RCP formalized with an access process and automated using the web API.

Improving Nextflow support has successfully streamlined and simplified analyses for much of the institute, with usage continually growing. Now with 2 years of experience supporting Nextflow, we will also discuss some ongoing issues we have encountered, scenarios where Nextflow is not the best fit, and alternatives we have in mind for these scenarios.
Preliminary Study on the Behaviour of Fibre-Reinforced Polymer Piles in Sandy Soils
Creators: name: Lu, Yi
name: Aboel Naga, Hossam
name: Shaia, Hussein A
name: Shang, Zhi
Publisher: name: La Trobe
Year: 2023
Subjects: classificationCode: 3301
subject: Architecture
subject: FOS: Civil engineering
classificationCode: 4005
subject: Civil engineering
classificationCode: 3302
subject: Building

description: Fibre-reinforced polymer (FRP) is a type of composite material used to provide resistance to corrosion when incorporated into piles. However, there is a gap in knowledge in terms of the behaviour of FRP piles under axial or lateral loading in soils. Thus, the aim of this experimental study is to assess the factors that influence the behaviour of FRPs under axial and lateral load in sandy soil. CFRP (carbon-fibre-reinforced polymer) and GFRP (glass-fibre-reinforced polymer) piles were tested in this experiment based on a special pressure chamber. The results show that the surface roughness (Rt), confined pressure (σc), and relative density (Dr) determined the shearing resistance of the soils and subsequently affected the bearing capacity of the FRP piles under an axial load. The flexural stiffness of the FRP piles was determined by the FRP type, pile dimeter, and aging in the environment, which were affected under the lateral load. In addition, an alkaline environment was more aggressive to the FRP piles than those aged in an acidic environment. The numerical modelling results show that the sand types, in terms of the dilation angle and Young’s modulus, also had a great influence on the behaviour. This feature should be considered more carefully in future studies.
On the Gevrey ultradifferentiability of weak solutions of an abstract evolution equation with a scalar type spectral operator
Creators: name: Markin, Marat V.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Functional Analysis (math.FA)
subject: FOS: Mathematics
subject: 34G10, 47B40, 30D60 (Primary), 47B15, 47D06, 47D60 (Secondary)

description: Found are conditions on a scalar type spectral operator $A$ in a complex Banach space necessary and sufficient for all weak solutions of the evolution equation \begin{equation*} y'(t)=Ay(t),\ t\ge 0, \end{equation*} to be strongly Gevrey ultradifferentiable of order $β\ge 1$, in particular analytic or entire, on $[0,\infty)$. Certain inherent smoothness improvement effects are analyzed.
Emergent Lévy behavior in single-cell stochastic gene expression
Creators: name: Jia, Chen
name: Zhang, Michael Q.
name: Qian, Hong
Publisher: name: arXiv
Year: 2017
Subjects: subject: Molecular Networks (q-bio.MN)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Cell Behavior (q-bio.CB)
subject: Quantitative Methods (q-bio.QM)
subject: FOS: Biological sciences
subject: FOS: Physical sciences

description: Single-cell gene expression is inherently stochastic; its emergent behavior can be defined in terms of the chemical master equation describing the evolution of the mRNA and protein copy numbers as the latter tends to infinity. We establish two types of "macroscopic limits": the Kurtz limit is consistent with the classical chemical kinetics, while the Lévy limit provides a theoretical foundation for an empirical equation proposed in [Phys. Rev. Lett. 97:168302, 2006]. Furthermore, we clarify the biochemical implications and ranges of applicability for various macroscopic limits and calculate a comprehensive analytic expression for the protein concentration distribution in autoregulatory gene networks. The relationship between our work and modern population genetics is discussed.
description: 10 pages, 2 figures
title: ADCO, Huitième cartulaire de Saint-Étienne de Dijon (1661-1667), Cart. 31 (G 135), 549 folios, f. 0067
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Huitième cartulaire de Saint-Étienne de Dijon (1661-1667), Archives départementales de la Côte-d'Or, Cart. 31 (G 135), 549 folios, f. 0067, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Huitième cartulaire de Saint-Étienne de Dijon (1661-1667), Archives départementales de la Côte-d'Or, Cart. 31 (G 135), 549 folios, f. 0067, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
title: ADCO, Cartulaire de Fontenay, premier fragment (XIIIe siècle), Cart. 201 (15 H 9), 175 folios, f. 014r
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2009
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire

description: Cartulaire de Fontenay, premier fragment (XIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 201 (15 H 9), 175 folios. Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de Fontenay, premier fragment (XIIIe siècle), Archives départementales de la Côte-d'Or, Cart. 201 (15 H 9), 175 folios, f. 014r, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb119679755
description: Provenance: https://www.geonames.org/7874015
description: Provenance: http://www.idref.fr/027691802/id
description: Provenance: abbaye de Fontenay
description: Provenance: http://www.wikidata.org/entity/Q464918
Implications of Heavy Quark-Diquark Symmetry for Excited Doubly Heavy Baryons and Tetraquarks
Creators: name: Mehen, Thomas
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We give heavy quark-diquark symmetry predictions for doubly heavy baryons and tetraquarks in light of the recent discovery of the $Ξ_{cc}^{++}$ by LHCb. For five excited doubly charm baryons that are predicted to lie below the $Λ_c D$ threshold, we give predictions for their electromagnetic and strong decays using a previously developed chiral Lagrangian with heavy quark-diquark symmetry. Based on the mass of the $Ξ_{cc}^{++}$, the existence of a doubly heavy bottom $I=0$ tetraquark that is stable to the strong and electromagnetic decays has been predicted. If the mass of this state is below 10405 MeV, as predicted in some models, we argue using heavy quark-diquark symmetry that the $J^P=1^+$ $I=1$ doubly bottom tetraquark state will lie just below the open bottom threshold and likely be a narrow state as well. In this scenario, we compute strong decay width for this state using a new Lagrangian for tetraquarks which is related to the singly heavy baryon Lagrangian by heavy quark-diquark symmetry.
description: 10 pages, version accepted in PRD
Solving the Jitter Problem in Microwave Compressed Ultrafast Electron Diffraction Instruments: Robust Sub-50 fs Cavity-Laser Phase Stabilization
Creators: name: Otto, Martin R.
name: de Cotret, Laurent P. Rene
name: Stern, Mark J.
name: Siwick, Bradley J.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: We demonstrate the compression of electron pulses in a high-brightness ultrafast electron diffraction (UED) instrument using phase-locked microwave signals directly generated from a mode-locked femtosecond oscillator. Additionally, a continuous-wave phase stabilization system that accurately corrects for phase fluctuations arising in the compression cavity from both power amplification and thermal drift induced detuning was designed and implemented. An improvement in the microwave timing stability from 100 fs to 5 fs RMS is measured electronically and the long-term arrival time stability ($>$10 hours) of the electron pulses improves to below our measurement resolution of 50 fs. These results demonstrate sub-relativistic ultrafast electron diffraction with compressed pulses that is no longer limited by laser-microwave synchronization.
description: Accepted for publication in Structural Dynamics
title: MUSIC IN THE ISLAMIC WORLD
title: SOURCES, PERSPECTIVES, PRACTICES
titleType: AlternativeTitle
title: Η μουσική στον ισλαμικό κόσμο
title: ΠΗΓΕΣ, ΘΕΩΡΗΣΕΙΣ, ΠΡΑΚΤΙΚΕΣ
titleType: AlternativeTitle
Creators: name: Poulos, Panagiotis
Publisher: name: Kallipos, Open Academic Editions
Year: 2015
Subjects: ΙΣΛΑΜ
ΜΕΣΗ ΑΝΑΤΟΛΗ
ΙΣΤΟΡΙΑ ΚΑΙ ΠΟΛΙΤΙΣΜΟΣ
ΙΣΤΟΡΙΑ ΤΗΣ ΜΟΥΣΙΚΗΣ
ΕΘΝΟΜΟΥΣΙΚΟΛΟΓΙΑ
ΙΣΤΟΡΙΑ ΤΗΣ ΤΕΧΝΗΣ
Islam
Middle East
History And Culture
History Of Music
Ethnomusicology
History Of Art

description: This book is an introductory handbook to the historical and ethnomusicological study of the musical traditions of the Islamic world. The aim of the book is to introduce its readers to the role and status of music in societies where Islam has historically been the predominant religion. The book is structured around three basic themes: Sources, Perspectives, Practices. Among the topics that are being explored is the relation between music, religion and ritual, the ways music is transmitted, musical orality and literacy, philosophical approaches to music and its conception as science and as art, its performative nature etc. Music is approached in relation to other forms of art (literature, iconography, architecture etc.) and to the various fields in which creativity is expressed in the Islamic world. Overall, the book aims to to contribute to a deeper and broader understanding of Islamic culture.
description: Το βιβλίο αποτελεί εισαγωγικό εγχειρίδιο για την ιστορική και εθνομουσικολογική μελέτη της μουσικής στον ισλαμικό κόσμο. Στόχος του βιβλίου είναι να εισαγάγει τον αναγνώστη/διδασκόμενο στον ιδιαίτερο ρόλο και τη θέση που κατέχει η μουσική στις κοινωνίες όπου ιστορικά το Ισλάμ αποτέλεσε κυρίαρχη θρησκεία, με απώτερο σκοπό να συμβάλει στην εμβάθυνση και την κατανόηση του ισλαμικού πολιτισμού.

Το βιβλίο διαρθρώνεται γύρω από τρεις βασικούς θεματικούς άξονες (Πηγές, Θεωρήσεις, Πρακτικές) οι οποίοι παρουσιάζονται και αναλύονται ιστορικά, από την επικράτηση του Ισλάμ τον 7ο έως και τις αρχές του 20 αιώνα, και υποστηρίζονται με επιλεγμένα παραδείγματα από διαφορετικές μουσικές παραδόσεις (Αραβική, Περσική, Οθωμανική κλπ.) του ισλαμικού κόσμου. Ιδιαίτερη έμφαση δίνεται στην κατανόηση της σχέσης μεταξύ του Ισλάμ και της μουσικής, και του φάσματος των αντιλήψεων και των συμπεριφορών που διαμορφώθηκαν ιστορικά απέναντι στο ζήτημα των αποδεκτών χρήσεων της μουσικής στο θρησκευτικό πλαίσιο. Εξετάζονται αναλυτικά ζητήματα που αφορούν στους τρόπους μετάδοσης της μουσικής και που συμπεριλαμβάνουν προφορικές και γραπτές πρακτικές, στις φιλοσοφικές θεωρήσεις και τις θεωρητικές διαστάσεις σχετικά με τη μουσική τόσο ως τέχνη όσο και ως επιστήμη, καθώς και στην επιτελεστική διάστασή της που προσδιορίζεται από το ευρύτερο πολιτισμικό πλαίσιο, τους μουσικούς και τα διαφορετικά μουσικά είδη. Σε όλα τα παραπάνω θεματικά πεδία, η μουσική προσεγγίζεται και αναλύεται σε συνάρτηση με τις υπόλοιπες μορφές τέχνης (λογοτεχνία, εικονογραφία, αρχιτεκτονική κλπ.) και τα διαφορετικά πεδία δημιουργικών διεργασιών του ισλαμικού πολιτισμού.
The MASSIVE Survey - VIII. Stellar Velocity Dispersion Profiles and Environmental Dependence of Early-Type Galaxies
Creators: name: Veale, Melanie
name: Ma, Chung-Pei
name: Greene, Jenny E.
name: Thomas, Jens
name: Blakeslee, John P.
name: Walsh, Jonelle L.
name: Ito, Jennifer
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We measure the radial profiles of the stellar velocity dispersions, $σ(R)$, for 90 early-type galaxies (ETGs) in the MASSIVE survey, a volume-limited integral-field spectroscopic (IFS) galaxy survey targeting all northern-sky ETGs with absolute $K$-band magnitude $M_K < -25.3$ mag, or stellar mass $M_* > 4 \times 10^{11} M_\odot$, within 108 Mpc. Our wide-field 107" $\times$ 107" IFS data cover radii as large as 40 kpc, for which we quantify separately the inner (2 kpc) and outer (20 kpc) logarithmic slopes $γ_{\rm inner}$ and $γ_{\rm outer}$ of $σ(R)$. While $γ_{\rm inner}$ is mostly negative, of the 56 galaxies with sufficient radial coverage to determine $γ_{\rm outer}$ we find 36% to have rising outer dispersion profiles, 30% to be flat within the uncertainties, and 34% to be falling. The fraction of galaxies with rising outer profiles increases with $M_*$ and in denser galaxy environment, with 10 of the 11 most massive galaxies in our sample having flat or rising dispersion profiles. The strongest environmental correlations are with local density and halo mass, but a weaker correlation with large-scale density also exists. The average $γ_{\rm outer}$ is similar for brightest group galaxies, satellites, and isolated galaxies in our sample. We find a clear positive correlation between the gradients of the outer dispersion profile and the gradients of the velocity kurtosis $h_4$. Altogether, our kinematic results suggest that the increasing fraction of rising dispersion profiles in the most massive ETGs are caused (at least in part) by variations in the total mass profiles rather than in the velocity anisotropy alone.
description: Accepted/in press, MNRAS
title: 01_0188
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
Temperature Dependent Thermal Boundary Conductance of Monolayer MoS$_2$ by Raman Thermometry
Creators: name: Yalon, Eilam
name: Aslan, Özgür Burak
name: Smithe, Kirby K. H.
name: McClellan, Connor J.
name: Suryavanshi, Saurabh V.
name: Xiong, Feng
name: Sood, Aditya
name: Neumann, Christopher M.
name: Xu, Xiaoqing
name: Goodson, Kenneth E.
name: Heinz, Tony F.
name: Pop, Eric
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The electrical and thermal behavior of nanoscale devices based on two-dimensional (2D) materials is often limited by their contacts and interfaces. Here we report the temperature-dependent thermal boundary conductance (TBC) of monolayer MoS$_2$ with AlN and SiO$_2$, using Raman thermometry with laser-induced heating. The temperature-dependent optical absorption of the 2D material is crucial in such experiments, which we characterize here for the first time above room temperature. We obtain TBC ~ 15 MWm$^-$$^2$K$^-$$^1$ near room temperature, increasing as ~ T$^0$$^.$$^6$$^5$ in the range 300 - 600 K. The similar TBC of MoS$_2$ with the two substrates indicates that MoS$_2$ is the "softer" material with weaker phonon irradiance, and the relatively low TBC signifies that such interfaces present a key bottleneck in energy dissipation from 2D devices. Our approach is needed to correctly perform Raman thermometry of 2D materials, and our findings are key for understanding energy coupling at the nanoscale.
title: ADCO, Cartulaire de Cîteaux dit Cartularium Vetus (milieu XIIIe siècle) et Notices du XIIe siècle, Cart. 169 (11 H 63), f. 0059v
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2011
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Cartulaire de Cîteaux dit Cartularium Vetus (milieu XIIIe siècle) et Notices du XIIe siècle, Archives départementales de la Côte-d'Or, Cart. 169 (11 H 63), f. 0059v, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de Cîteaux dit Cartularium Vetus (milieu XIIIe siècle) et Notices du XIIe siècle, Archives départementales de la Côte-d'Or, Cart. 169 (11 H 63), f. 0059v, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
The impact of galaxy formation on satellite kinematics and redshift-space distortions
Creators: name: Orsi, Alvaro A.
name: Angulo, Raul E.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Galaxy surveys aim to map the large-scale structure of the Universe and use redshift space distortions to constrain deviations from general relativity and probe the existence of massive neutrinos. However, the amount of information that can be extracted is limited by the accuracy of theoretical models used to analyze the data. Here, by using the L-Galaxies semi-analytical model run over the MXXL N-body simulation, we assess the impact of galaxy formation on satellite kinematics and the theoretical modelling of redshift-space distortions. We show that different galaxy selection criteria lead to noticeable differences in the radial distributions and velocity structure of satellite galaxies. Specifically, whereas samples of stellar mass selected galaxies feature satellites that roughly follow the dark matter, emission line satellite galaxies are located preferentially in the outskirts of halos and display net infall velocities. We demonstrate that capturing these differences is crucial for modelling the multipoles of the correlation function in redshift space, even on large scales. In particular, we show how modelling small scale velocities with a single Gaussian distribution leads to a poor description of the measure clustering. In contrast, we propose a parametrization that is flexible enough to model the satellite kinematics, and that leads to and accurate description of the correlation function down to sub-Mpc scales. We anticipate that our model will be a necessary ingredient in improved theoretical descriptions of redshift space distortions, which together could result in significantly tighter cosmological constraints and a more optimal exploitation of future large datasets.
description: 16 pages, 15 figures, typos corrected and moderate revision after referee report