cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Materials
Creators: name: Nguyễn, Giang Thị Quỳnh
name: Loh Hong Sen
name: Verheyen, Steven
Publisher: name: OSF Registries
Year: 2022

description: The pre - registration refers to the materials that can be found on the main project page.
Please find all the pre-registered components of this project in the Files section of the pre - registration. You can also follow this link https://osf.io/str57/, which leads you to the Materials section of the main project page.
Coming together or drifting apart? The EU’s political integration capacity in Eastern Europe
Creators: name: Börzel, Tanja A.
name: Schimmelfennig, Frank
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: Science Policy

description: This contribution assesses the EU’s external political integration capacity: its ability to promote democracy and governance effectiveness in non-member and new member states. Based on macro-quantitative data, we examine the political trajectory of Central European, South-east European, and post-Soviet countries. We find that democracy and governance effectiveness have improved overall in the past 20 years. However, Eastern Europeans have been moving on distinct sub-regional paths and have been unable to catch up with the old member states. Our analysis of the EU impact shows a robust effect of EU accession conditionality. By contrast, we do not find a systematic effect of conditionality in the absence of membership incentives. Once countries become members, the EU’s political integration capacity weakens, too. Finally, we observe that the EU has a stronger effect on governance effectiveness than on democracy.
Additional file 2: of Quality assessment of systematic reviews on total hip or knee arthroplasty using mod-AMSTAR
Creators: name: Wu, Xinyu
name: Sun, Huan
name: Zhou, Xiaoqin
name: Wang, Ji
name: Li, Jing
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Medicine
subject: Chemical Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Science Policy

description: Appendix 2. Search strategies: Detailed information on search strategies of this study in Medline, Embase, Cochrane Databases (including HTA, DARE and CDSR), CBM, CNKI, Wang Fang and VIP. (Search strategies). (DOCX 19 kb)
Eastern enlargement and differentiated integration: towards normalization
Creators: name: Schimmelfennig, Frank
name: Winzen, Thomas
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Plant Biology

description: Against the background of theoretical arguments and the historical record, enlargements of the European Union tend to increase differentiated integration. The actual development of differentiation of the 2004 and 2007 accession countries can, therefore, be seen as an indicator of the Union’s integration capacity. We map the newcomers’ differentiated integration since accession, and also distinguish between exemptions and discrimination. Furthermore, we approximate a counterfactual scenario of how their level of differentiation might have developed in the absence of recent accession through a comparison to the Southern member states. Finally, we explore correlations between exemptions, discriminations and two structural country characteristics, wealth and identity. Overall, the level, trajectory and patterns of differentiation point towards a normalization of the new member states’ integration in the Union.
Cyanobacteria-Fungi: Friends to Waste Water Treatment.
Creators: name: Pannu, Lasya
name: Poosa, Padmalatha
name: Kanjilal, Shubhangi
name: Deepthi, Chandra
name: Reddy, Kasala Akshitha
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 410504
subject: Surface water quality processes and contaminated sediment assessment
classificationCode: 410599
subject: Pollution and contamination not elsewhere classified
classificationCode: 410501
subject: Environmental biogeochemistry

description: The cyanobacterium species Scytonema was extracted from a polluted lake while the fungal species Aspergillus flavus was isolated from rotten apples and pears. These have originated in different environments and were exposed to different media. They were co-cultured for 45 days, as well as cultured separately in BG11 medium, cyanobacteria spent medium, fungal spent medium and domestic primary effluent collected from a local open drainage. The observation portrayed their mutualistic relationship to one another and their efficiency in treating wastewater. Such a relationship has led to a decrease in the percentage of biomass and thus in-turn, helping us analyze its effect in treating wastewater systems.
Additional file 3: of Quality assessment of systematic reviews on total hip or knee arthroplasty using mod-AMSTAR
Creators: name: Wu, Xinyu
name: Sun, Huan
name: Zhou, Xiaoqin
name: Wang, Ji
name: Li, Jing
Publisher: name: figshare
Year: 2018
Subjects: Medicine
Pharmacology
Biotechnology
Biological Sciences not elsewhere classified
Science Policy

description: Appendix 3. AMSTAR score and list of included reviews: mod-AMSTAR score for each study and reference information of all included studies. (AMSTAR score and list of included reviews). (DOCX 58 kb)
title: The Concept of the Urban Palimpsest. The Urban Fabric Transformations in Inherited City image
Creators: name: Sarihan, Elif
Publisher: name: Conference Proceedings XXIX International Seminar on Urban Form ISUF 2022 Urban Redevelopment and Revitalisation A Multidisciplinary Perspective/Lodz University of Technology Press
Year: 2023
Subjects: Urban morphology, Palimpsest concept, Historical layering, Urban conservation.

description: Transformations and spatial patterns of physical forms are the basis of urban morphological studies to understand and interpret the process-based – multi-layered – transitions, transformations and spatial patterns of physical components. The concept of palimpsest explains the continuous construction over time (historical stratification), but the scale of urban palimpsest is more than that. The research points out the pragmatic nature of the urban fabric and aims to examine the relationship between the fundamental types of transformations and their distinctive forces. Thus, in the current study, the structure of historical layering analysis includes elaborating the proposed palimpsest concept via comparison/overlapping historic maps of urban fabric types. The layers of inherited city image can experience through the combination of different urban morphological approaches. Via the combination of historico-geographical, typo-morphological, and configurational approaches of urban morphology, the layering analysis will be established. The purpose of the current paper is to demonstrate the urban palimpsest concept and make a proof of the concept in the urban conservation sites of Istanbul.
Biogenic fabrication of Au@CeO2 nanocomposite
Creators: name: Khan, Mohammad Mansoob
Publisher: name: figshare
Year: 2017
Subjects: subject: 90402 Catalytic Process Engineering
subject: FOS: Chemical engineering
subject: 91205 Functional Materials
subject: FOS: Materials engineering

description: Biogenic fabrication of Au@CeO2 nanocomposite
Homomorphic encryption algorithms and schemes for secure computations in the cloud
Creators: name: Alkharji, Majedah
name: Liu, Hang
Publisher: name: figshare
Year: 2018
Subjects: classificationCode: 460199
subject: Applied computing not elsewhere classified
classificationCode: 461399
subject: Theory of computation not elsewhere classified

description: This article provides:1. A detailed survey of homomorphic encryption (HE) using public key algorithms such as RSA, El-Gamal, and Paillier algorithms.2. Fully homomorphic encryption (FHE) schemes.This work can be helpful as a guide to principles, properties of FHE as researchers believe in the possibility of advancement in the FHE area.
title: Suivi du patient E
Creators: name: Leibowitch, Jacques (1942-2020)
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020

description: Graphique et tableau de fichier xls transformé en fichier pdf.
Genetic algorithm based key generation for fully homomorphic encryption
Creators: name: Alkharji, Majedah
name: Hammoshi, Mayyada Al
name: Hu, Chunqiang
name: Liu, Hang
Publisher: name: figshare
Year: 2018
Subjects: classificationCode: 460199
subject: Applied computing not elsewhere classified
classificationCode: 461399
subject: Theory of computation not elsewhere classified

description: This article describes a method to use Genetic Algorithm to generate keys for the fully homomorphic encryption scheme. Then perform some simple computations on the encrypted data. Results show that a GA generated key provides more randomness than other conventional methods used to generate public and private keys.
Presentation Slides - Genetic algorithm based key generation for fully homomorphic encryption
Creators: name: Alkharji, Majedah
name: Hammoshi, Mayyada Al
name: Hu, Chunqiang
name: Liu, Hang
Publisher: name: figshare
Year: 2018
Subjects: classificationCode: 460199
subject: Applied computing not elsewhere classified
classificationCode: 461399
subject: Theory of computation not elsewhere classified

description: Slides describe a method to use Genetic Algorithm to generate keys for the fully homomorphic encryption scheme. Then perform some simple computations on the encrypted data. Results show that a GA generated key provides more randomness than other conventional methods used to generate public and private keys.
Supplementary Material for: Predicting Successful Recanalization in Patients with Native Coronary Chronic Total Occlusion: The Busan CTO Score
Creators: name: Jin, C.D.
name: Kim, M.H.
name: Kim, S.J.
name: Lee, K.M.
name: Kim, T.H.
name: Cho, Y.-R.
name: Serebruany, V.L.
Publisher: name: Karger Publishers
Year: 2017
Subjects: Medicine

description: Background: The optimal strategy to manage chronic total occlusion (CTO) remains unclear. The Japanese CTO multicenter registry (J-CTO) score is an established tool for predicting successful recanalization. However, it does not take into account nonangiographic predictors for final technique success. In the present study, we designed and tested a scoring model called the Busan single-center CTO registry (B-CTO) score combining clinical and angiographic characteristics to predict successful CTO recanalization in Korean patients. Methods: Prospectively enrolled CTO patients (n = 438) undergoing coronary intervention (1999-2015) were assessed. The B-CTO score comprises 6 independent predictors: age 60-74 years and lesion length ≥20 mm were assigned 1 point each, while age ≥75 years, female gender, lesion location in the right coronary artery, blunt stump, and bending >45° were assigned 2 points each. For each predictor, the points assigned were based on the associated odds ratio by multivariate analysis. The lesions were classified into 4 groups according to the summation of points scored to assess the probability of successful CTO recanalization: easy (score 0-1), intermediate (score 2-3), difficult (score 4-5), and very difficult (score ≥6). CTO opening was designated as the primary endpoint regardless of the interventional era or the skill of the operator. Results: The final success rate for B-CTO was 81.1%. The probability of successful recanalization for patient groups classified as easy (n = 64), intermediate (n = 148), difficult (n = 134), and very difficult (n = 92) was 95.3, 86.5, 79.1 and 65.2%, respectively (p for trend <0.001). When compared to the J-CTO, the B-CTO score demonstrated a significant improvement in discrimination as indicated by the area under the receiver-operator characteristic curve (AUC 0.083; 95% CI 0.025-0.141), with a positive integrated discrimination improvement of 0.042 and a net reclassification improvement of 56.0%. Conclusions: The B-CTO score has been designed and validated in Korean patients with native coronary CTO and is an improved tool for predicting successful recanalization. Wider application of the B-CTO score remains to be explored.
Band gap engineered TiO2 nanoparticles for visible light induced photocatalysis
Creators: name: Khan, Mohammad Mansoob
Publisher: name: figshare
Year: 2017
Subjects: subject: 30601 Catalysis and Mechanisms of Reactions
subject: FOS: Chemical sciences
subject: 30301 Chemical Characterisation of Materials
subject: 39999 Chemical Sciences not elsewhere classified
subject: 30102 Electroanalytical Chemistry
subject: Inorganic Chemistry

description: Visible light-active TiO2 (m-TiO2) nanoparticles were obtained by an electron beam treatment ofcommercial TiO2 (p-TiO2) nanoparticles. The m-TiO2 nanoparticles exhibited a distinct red-shift in theUV-visible absorption spectrum and a much narrower band gap (2.85 eV) due to defects as confirmed bydiffuse reflectance spectroscopy (DRS), photoluminescence (PL), X-ray diffraction, Raman spectroscopy,electron paramagnetic resonance, transmission electron microscopy, X-ray photoelectron spectroscopy(XPS), electrochemical impedance spectroscopy (EIS) and linear scan voltammetry (LSV). The XPSrevealed changes in the surface states, composition, Ti4+ to Ti3+ ratio, and oxygen deficiencies in the m-TiO2. The valence band XPS, DRS and PL results were carefully examined to understand the band gapreduction of m-TiO2. The visible light-responsive enhanced photocatalytic activity of m-TiO2 wasdemonstrated by degrading methylene blue and brilliant blue G. The EIS and LSV in the dark and undervisible light irradiation further support the visible light-induced photocatalytic activities of the m-TiO2due to a decrease in electron transfer resistance and an increase in photocurrent. This study confirmsthat m-TiO2 can be used effectively as a photocatalyst and photoelectrode material owing to itsenhanced visible light-induced photocatalytic activity.
Éric Favereau, Libération
Creators: name: Leibowitch, Jacques (1942-2020)
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020

description: 1 fichier (1 page).
Additional file 4: of Evaluation of skeletal muscle microvascular perfusion of lower extremities by cardiovascular magnetic resonance arterial spin labeling, blood oxygenation level-dependent, and intravoxel incoherent motion techniques
Creators: name: Suo, Shiteng
name: Zhang, Lan
name: Tang, Hui
name: Ni, Qihong
name: Li, Suqin
name: Mao, Haimin
name: Liu, Xiangyu
name: He, Shengyun
name: Qu, Jianxun
name: Lu, Qing
name: Xu, Jianrong
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Physical Sciences not elsewhere classified
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Computational Biology

description: Table S1. Spearman rank correlation coefficients for ASL, BOLD, and IVIM imaging parameters. (DOCX 16 kb)
Additional file 5: of Evaluation of skeletal muscle microvascular perfusion of lower extremities by cardiovascular magnetic resonance arterial spin labeling, blood oxygenation level-dependent, and intravoxel incoherent motion techniques
Creators: name: Suo, Shiteng
name: Zhang, Lan
name: Tang, Hui
name: Ni, Qihong
name: Li, Suqin
name: Mao, Haimin
name: Liu, Xiangyu
name: He, Shengyun
name: Qu, Jianxun
name: Lu, Qing
name: Xu, Jianrong
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Biological Sciences not elsewhere classified
subject: Computational Biology

description: Table S2. Comparison of functional imaging parameters between affected and contralateral lower extremities in PAD patients. (DOCX 18 kb)
title: Transcription du manuscrit de Semur-en-Auxois, Bibliothèque Municipale, ms. 1, p. 146
Creators: name: Aubert, Eduardo Henrik
name: Brochard, Pierre
name: Aubert, Eduardo Henrik
name: Brochard, Pierre
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2022
Subjects: subject: Laboratoire de médiévistique occidentale de Paris
subject: Semur-en-Auxois
subject: LaMOP

description: Transcription du manuscrit de Semur-en-Auxois, Bibliothèque Municipale, ms. 1, p. 146

production-software: eScriptorium + Kraken version 3.0.13 (PageXml)
description: Source: https://www.nakala.fr/10.34847/nkl.737d77t2
description: Source: https://www.nakala.fr/10.34847/nkl.e905tdea
description: Relation: https://lamop.hypotheses.org/
description: Transcription du manuscrit Semur-en-Auxois, Bibliothèque Municipale, ms. 1
description: Transcription du manuscrit Semur-en-Auxois, Bibliothèque Municipale, ms. 1
Structural features of an acidic polysaccharide with the potential of promoting osteoblast differentiation from Lycium ruthenicum Murr.
Creators: name: Wang, Shu-Qi
name: Liu, Bing
name: Liu, Su
name: Xie, Song-Zi
name: Pan, Li-Hua
name: Zha, Xue-Qiang
name: Li, Qiang-Ming
name: Luo, Jian-Ping
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Developmental Biology
subject: Hematology
subject: Computational Biology

description: The enhanced osteoblast differentiation is beneficial to the prevention of osteoporosis. In this study, a homogeneous polysaccharide (LRP-S2A) with the potential of promoting osteoblast differentiation was obtained from the fruits of Lycium ruthenicum, a traditional herb for treatment of postmenopausal metabolic disorders. Structural identification indicated that LRP-S2A, with a relative molecular weight of 2.65 × 106 Da and an uronic acid content of 41.8%, contained Rha, Ara, Gal, Glc and GlcA in a molar ratio of 1.00 : 2.07 : 0.57 : 2.59 : 4.33 and was composed of a backbone consisting of 6-O-Me-α-(1→4)-D-GlcpA, 2-O-acetyl-α-(1→4)-D-Glcp, α-(1→2,4)-L-Rhap, β-(1→3)-D-Galp andα-(1→3,5)-L-Araf, and some branches consisting of 6-O-Me-α-(1→4)-D-GlcpA and terminal α-L-Araf. These results suggested that LRP-S2A with the potential of promoting osteoblast differentiation was a new acidic polysaccharide.
title: Introduction_Méthode sûre, facile et précise de photographie à l'usage des amateurs
Creators: name: AmateurS
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020

description: ID_PARA_00114
ACQUISITION FOREIGN LANGUAGE VIA INFORMATION TECHNOLOGY
Creators: name: Aitmuratova, Perkhan
name: Shonazarovna, Nasiba
Publisher: name: Zenodo
Year: 2024

description: In teaching foreign language to engineering students is long, complex process as it requires learners to have better known L1 because L1 is a key to acquire FL. It is full understanding linguistics aspects of L1 enable learners to better understand FL. Without intervention of L1 in teaching foreign language, effect will be less, consequently, we should explain translation of FL in native language (Uzbek) in details, otherwise, acquisition of foreign language may be complex, long, and misunderstanding. Besides, teaching languages via computer assisted classes is highly demanding now due to computerization society. This paper deals with the issues focusing on some features of instructions to learn FL with the help of Information technology especially in translation activities. Some scholars stated their expressions on vocabulary acquisition in FL learning and its beneficial traits.
Additional file 10: of Transcriptome profiling of genes related to light-induced anthocyanin biosynthesis in eggplant (Solanum melongena L.) before purple color becomes evident
Creators: name: Li, Jing
name: He, Yong-Jun
name: Zhou, Lu
name: Liu, Yang
name: Jiang, Mingmin
name: Ren, Li
name: Chen, Huoying
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Table S7 KEGG pathway enrichment analysis of the 869 DEGs. (DOCX 40 kb)
Additional file 1: of Cell-based reference samples designed with specific differences in microRNA biomarkers
Creators: name: Pine, P.
name: Lund, Steven
name: Stass, Sanford
name: Kukuruga, Debra
name: Jiang, Feng
name: Sorbara, Lynn
name: Srivastava, Sudhir
name: Salit, Marc
Publisher: name: figshare
Year: 2018
Subjects: Cell Biology
Molecular Biology
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Mathematical Sciences not elsewhere classified

description: Intro to Bayesian analysis. (PDF 1844Â kb)
MOESM1 of Paeoniflorin exerts neuroprotective effects by modulating the M1/M2 subset polarization of microglia/macrophages in the hippocampal CA1 region of vascular dementia rats via cannabinoid receptor 2
Creators: name: Luo, Xian-Qin
name: Li, Ao
name: Yang, Xue
name: Xiao, Xiao
name: Hu, Rong
name: Wang, Tian-Wen
name: Dou, Xiao-Yun
name: Yang, Da-Jian
name: Dong, Zhi
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Cell Biology
subject: Neuroscience
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 1. The Minimum Standards of Reporting Checklist.
EU Partnership Animal Health Position paper
Creators: name: Imberechts, Hein
name: Morrow, Alex
name: Gyorffy, Andrea
name: Garin-Bastuji, Bruno
name: Divenach, Françoise
name: Schobesberger, Hermann
name: Richardson, Jennifer
name: Moller, Kristian
name: Ekateriniadou, Loukia
name: Bagni, Marina
name: Sharma, Sadhana
name: Sellers, Scott
name: Messori, Stefano
Publisher: name: Zenodo
Year: 2020
Subjects: Animal health, animal welfare, coordination, research, preparedness

description: This position paper aims at clarifying the needs for a EU Partnership under Horizon Europe. It describes its objectives, both for animal health and animal welfare. The document serves to identify candidate partners that will add value and that may join the partnership.
Supplementary Material from Long-term tracking of budding yeast cells in brightfield microscopy: CellStar and the Evaluation Platform
Creators: name: Versari, Cristian
name: Stoma, Szymon
name: Batmanov, Kirill
name: Artémis Llamosi
name: Mroz, Filip
name: Kaczmarek, Adam
name: Deyell, Matt
name: Lhoussaine, Cédric
name: Hersen, Pascal
name: Batt, Gregory
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: 60102 Bioinformatics
subject: FOS: Computer and information sciences
subject: Computational Biology

description: Supplementary information on the CellStar segmentation and tracking pipelines, and on the benchmarks and Evaluation Platform, and supplementary results on tool comparisons
Supplementary Material for: Photometric Determination of Ammonium and Phosphate in Seawater Medium Using a Microplate Reader
Creators: name: Ruppersberg, H.S.
name: Goebel, M.R.
name: Kleinert, S.I.
name: Wünsch, D.
name: Trautwein, K.
name: Rabus, R.
Publisher: name: Karger Publishers
Year: 2017
Subjects: Medicine

description: To more efficiently process the large sample numbers for quantitative determination of ammonium (NH4+) and phosphate (orthophosphate, PO43-) generated during comprehensive growth experiments with the marine Roseobacter group member Phaeobacter inhibens DSM 17395, specific colorimetric assays employing a microplate reader (MPR) were established. The NH4+ assay is based on the reaction of NH4+ with hypochlorite and salicylate, yielding a limit of detection of 14 µM, a limit of quantitation of 36 µM, and a linear range for quantitative determination up to 200 µM. The PO43-assay is based on the complex formation of PO43- with ammonium molybdate in the presence of ascorbate and zinc acetate, yielding a limit of detection of 13 µM, a limit of quantitation of 50 µM, and a linear range for quantitative determination up to 1 mM. Both MPR-based assays allowed for fast (significantly lower than 1 h) analysis of 21 samples plus standards for calibration (all measured in triplicates) and showed only low variation across a large collection of biological samples.
Additional file 1: of Transcriptome profiling of genes related to light-induced anthocyanin biosynthesis in eggplant (Solanum melongena L.) before purple color becomes evident
Creators: name: Li, Jing
name: He, Yong-Jun
name: Zhou, Lu
name: Liu, Yang
name: Jiang, Mingmin
name: Ren, Li
name: Chen, Huoying
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Table S1. List of primers sequences used in this study. (DOCX 33 kb)
Supplementary Material for: Exome Sequencing Identifies a Novel DES Mutation (R227C) in a Chinese Dilated Cardiomyopathy Family
Creators: name: Yu, R.
name: Liu, L.
name: Chen, C.
name: Shen, J.-M.
Publisher: name: Karger Publishers
Year: 2017
Subjects: Medicine

description: Objectives: Dilated cardiomyopathy (DCM) is a common disease in the clinic, and it is the leading cause of heart failure and sudden cardiac death. Previous studies have proven that genetic factors play a crucial role in the occurrence of DCM; more than 50 disease genes including desmin (DES) have been identified to be associated with DCM. At present, most DES mutations are reported in desmin-related myofibrilla myopathy patients, but variants leading to isolated DCM are rarely reported. Methods: We applied whole-exome sequencing and cardiomyopathy-related gene filtering strategies to discover the genetic factors in a Chinese DCM family. Results: A novel mutation (c.679 C>T /p.R227C) in exon 3 of DES was identified and cosegregated with the affected members of a Chinese family with isolated DCM phenotypes (left ventricle and left atrial diameters). Conclusion: This mutation leads to a substitution of arginine by cysteine and it is predicted to be deleterious by bioinformatics programs. Our study not only contributes to the genetic diagnosis and counseling of families with DCM, but it also further proves that DES mutations may lead to isolated DCM and provides a new case for the study of the relationship between DES mutations and DCM.
MOESM1 of pH-mediated upregulation of AQP1 gene expression through the Spi-B transcription factor
Creators: name: Zhai, Yihui
name: Xu, Hong
name: Shen, Qian
name: Schaefer, Franz
name: Schmitt, Claus
name: Chen, Jing
name: Liu, Haimei
name: Liu, Jialu
name: Liu, Jiaojiao
Publisher: name: figshare
Year: 2018
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Computational Biology

description: Additional file 1. Additional figures and table.
Preservation and Study of Historical Guitars Museu de la Musica de Catalunya: Methodology Proposal to Play the Unplayable
Creators: name: Senan, Toros Ufuk
Publisher: name: Zenodo
Year: 2014

description: WoodMusick project is a multi-disciplinary COST action research project. The main goal of the project is to study museum instruments and preserve their physical and acoustical properties. This paper aims to contribute the project by studying historical guitars in Museu de la Musica, Catalunya, as well as to propose a global measurement methodology for prediction of acoustical properties of guitars during the design stage. Two historical classical guitars, Torres 625 from Antonio de Torres and Labrador from the romantic period are studied, in addition to a test guitar. Steady-state and impulse responses are recorded and spectral and physical properties are extracted from recordings. The results are classified with WEKA by ESSENTIA descriptors and two guitars are successfully identified and distinguished from each other. Extracted features and physical properties are observed in the latter stage and sound feature estimations are proposed. Besides the multidisciplinary nature of the study is already a challenging task, the main obstacle turned out to be to build a methodology that ensures the safety of the instrument while collecting the necessary data. The results are promising for building a dataset with a proposed methodology to predict acoustical features of guitars in the design stage as well as creating an archive for historical instruments and monitor their physical state and its effect on sound features in time.
Additional file 2: of Transcriptome profiling of genes related to light-induced anthocyanin biosynthesis in eggplant (Solanum melongena L.) before purple color becomes evident
Creators: name: Li, Jing
name: He, Yong-Jun
name: Zhou, Lu
name: Liu, Yang
name: Jiang, Mingmin
name: Ren, Li
name: Chen, Huoying
Publisher: name: figshare
Year: 2018
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Table S2. Summary statistics of sequencing and assembly. (DOCX 28 kb)
Appendix B: Trophic transmission model analyses from Host allometry influences the evolution of parasite host-generalism: theory and meta-analysis
Creators: name: Walker, Josephine G.
name: Hurford, Amy
name: Cable, Jo
name: Ellison, Amy R.
name: Price, Stephen J.
name: Cressler, Clayton E.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: Health Care
subject: Diseases
subject: 111706 Epidemiology
subject: FOS: Health sciences

description: Derivation of invasion conditions and analysis for the models in Table 3
Appendix C: Supplementary Material from Host allometry influences the evolution of parasite host-generalism: theory and meta-analysis
Creators: name: Walker, Josephine G.
name: Hurford, Amy
name: Cable, Jo
name: Ellison, Amy R.
name: Price, Stephen J.
name: Cressler, Clayton E.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: Health Care
subject: Diseases
subject: 111706 Epidemiology
subject: FOS: Health sciences

description: Additional details on host-relatedness metrics and supplementary figures
Appendix A: Direct life cycle model analyses from Host allometry influences the evolution of parasite host-generalism: theory and meta-analysis
Creators: name: Walker, Josephine G.
name: Hurford, Amy
name: Cable, Jo
name: Ellison, Amy R.
name: Price, Stephen J.
name: Cressler, Clayton E.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: Health Care
subject: Diseases
subject: 111706 Epidemiology
subject: FOS: Health sciences

description: Derivation of invasion conditions and analysis for the models in Table 2
Supplementary Material including additional figures and tables which provide more detailed results and further description of data collection and processing from Prediction limits of mobile phone activity modelling
Creators: name: Kondor, Dániel
name: Grauwin, Sebastian
name: Kallus, Zsófia
name: Gódor, István
name: Sobolevsky, Stanislav
name: Ratti, Carlo
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Statistics
subject: FOS: Mathematics
subject: 80201 Analysis of Algorithms and Complexity
subject: FOS: Computer and information sciences

description: Thanks to their widespread usage, mobile devices have become one of the main sensors of human behaviour and digital traces left behind can be used as a proxy to study urban environments. Exploring the nature of the spatio-temporal patterns of mobile phone activity could thus be a crucial step towards understanding the full spectrum of human activities. Using 10 months of mobile phone records from Greater London resolved in both space and time, we investigate the regularity of human telecommunication activity on urban scales. We evaluate several options for decomposing activity timelines into typical and residual patterns, accounting for the strong periodic and seasonal components. We carry out our analysis on various spatial scales, showing that regularity increases as we look at aggregated activity in larger spatial units with more activity in them. We examine the statistical properties of the residuals and show that it can be explained by noise and specific outliers. Also, we look at sources of deviations from the general trends, which we find to be explainable based on knowledge of the city structure and places of attractions. We show examples how some of the outliers can be related to external factors such as specific social events
Additional file 5: of Cell-based reference samples designed with specific differences in microRNA biomarkers
Creators: name: Pine, P.
name: Lund, Steven
name: Stass, Sanford
name: Kukuruga, Debra
name: Jiang, Feng
name: Sorbara, Lynn
name: Srivastava, Sudhir
name: Salit, Marc
Publisher: name: figshare
Year: 2018
Subjects: Space Science
Cell Biology
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Information Systems not elsewhere classified
Mathematical Sciences not elsewhere classified

description: Code for running MCMC. (PDF 41Â kb)
The strategic use of resettlement policies by Western Countries
Creators: name: Lutz, Philipp
name: Portmann, Lea
Publisher: name: Eurac Research
Year: 2022

description: Western countries repeatedly point to resettlement – the organised transfer of refugees to a safe third country – as a solution to persistent humanitarian crises. Yet, Philipp Lutz and Lea Portmann show how such resettlement can, paradoxically, be a way for states to legitimise limiting access to humanitarian protection.
ISOLATED COMMON ILIAC ARTERY ANEURYSM WITH SPECIFIC ANATOMICAL CONSIDERATIONS
Creators: name: Sousa, Pedro
name: Sá Pinto, Pedro
Publisher: name: Portuguese Journal of Cardiac Thoracic and Vascular Surgery
Year: 2022

description: Introduction: Iliac artery aneurysms (IAA) are a rare entity with a prevalence lower than 2% in the general popula- tion involving typically the common iliac artery in 70-90%. Literature describes that bilateral common IAA may be present in approximately 50% of the affected patients. Case-report: The authors present an 88 years old male patient with an isolated giant IAA, 84mm maximum diameter, diagnosed following a four-month period of lower abdominal discomfort and pelvic hyperemic mass. The IAA was successfully excluded with an endovascular approach with an Aorto-uni-iliac endograft Endurant II (Medtronic Cardiovascular, Santa Rosa, CA, USA) followed by a femorofemoral right to left bypass. Discussion: Asymptomatic IAA are difficult to identify due to their anatomical location deep within the pelvis but once symptomatic they are associated with a high rate of morbidity and mortality. Their management has evolved toward an endovascular first approach over the past decades, nevertheless, the type of operative repair depends on patient anatomy, clinical stability and the presence of other concomitant aneurysms.
description: Portuguese Journal of Cardiac Thoracic and Vascular Surgery, Vol. 29 No. 1 (2022): Jan - Mar
GIANT THORACIC MASS – THE STORY OF A SOLITARY FIBROUS TUMOUR
Creators: name: Lareiro, Susana
name: Leite, Filipe
name: Paupério, Gonçalo
Publisher: name: Portuguese Journal of Cardiac Thoracic and Vascular Surgery
Year: 2022

description: The tumours of the pleura are a vast and diverse field. One of the lesser known and less common tumour is the solitary fibrous tumour of the pleura, representing about 5% of these types of tumours. The authors present the case of a woman admitted to the emergency department with symptoms of dizziness and vomits. Imaging studies showed a giant thoracic mass on the left hemithorax, with a biopsy indicating a solitary fibrous tumour. The patient was referred for surgery, which was performed via thoracotomy. In the postoperative period she developed an acute pulmonary oedema secondary to lung reexpansion and fluid overload, with a good response to fluid restriction and intravenous diuretics.
description: Portuguese Journal of Cardiac Thoracic and Vascular Surgery, Vol. 29 No. 1 (2022): Jan - Mar
CHEMOTHERAPY HAZARDS: ANTHRACYCLINE EXTRAVASATION INTO PLEURAL SPACE
Creators: name: Almendra, Alexandre
name: Falcão, Pedro
name: Moreira, Susana
name: Azevedo, Pilar
Publisher: name: Portuguese Journal of Cardiac Thoracic and Vascular Surgery
Year: 2022

description: The extravasation of doxorubicin, a cytostatic from the anthracycline group, is a rare and feared complication of intravenous chemotherapy due to tissue toxicity of these drugs. We describe a case of a 64-year-old woman with breast cancer undergoing adjuvant chemotherapy with doxorubicin and cyclophosphamide using a tunneled central catheter. After a chemotherapy cycle, the patient developed cough, dyspnoea and chest pain, due to a pleural effusion secondary to cytostatic leakage. A pleural drainage was placed and dexrazoxone was administred with resolution of the condition. The authors wish to highlight that the use of dexrazoxone should be considered after intra-pleural extravasation of anthracyclines given its effectiveness in preventing tissue damage and long-term sequelae in peripheral extravasation.
description: Portuguese Journal of Cardiac Thoracic and Vascular Surgery, Vol. 29 No. 1 (2022): Jan - Mar
ISCHEMIC MITRAL REGURGITATION – TO REPAIR OR REPLACE? LOOKING BEYOND THE VALVE.
Creators: name: Mil-Homens Luz, Francisco
name: Amorim, Mário Jorge
Publisher: name: Portuguese Journal of Cardiac Thoracic and Vascular Surgery
Year: 2022

description: Introduction: Ischemic mitral regurgitation (IMR) is a frequent and serious complication of coronary artery disease, associated with considerable patient increased mortality and morbidity. While the benefits of optimal medical therapy and surgical revascularization, when indicated, are uncontested in moderate to severe cases, the ideal surgical approach to the valve, if any, is yet to be established. Mitral valve repair has established benefits over replacement in primary mitral regurgitation, but its superiority in the treatment of functional regurgitation has not been replicated. Differing outcomes likely stem from the distinct IMR pathophysiology. Unlike its degenerative counterparts, IMR does not derive from direct damage to the valve leaflets, but rather from dysfunction of its sub-valvular apparatus and the left ventricular wall, in the context of acute or chronic ischaemia. Echocardiographic data points to remodelling of the left ventricle, with subsequent papillary muscle displacement, increased leaflet tethering and inefficient coaptation, as the main responsible mechanism for ischemic mitral regurgitation. Neither mitral valve repair nor replacement directly address these issues, with the appearance of the first randomized trials supporting replacement as the more durable option. However, new subvalvular procedures are improving the stability of repair techniques and the debate is long from settled. The purpose of this review is to analyse the currently available data, couple it with our understanding of IMR’s pathophysiology and compare the different outcomes for mitral valve repair and replacement.
description: Portuguese Journal of Cardiac Thoracic and Vascular Surgery, Vol. 29 No. 1 (2022): Jan - Mar
Additional file 6: of Cell-based reference samples designed with specific differences in microRNA biomarkers
Creators: name: Pine, P.
name: Lund, Steven
name: Stass, Sanford
name: Kukuruga, Debra
name: Jiang, Feng
name: Sorbara, Lynn
name: Srivastava, Sudhir
name: Salit, Marc
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Cell Biology
subject: Molecular Biology
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Plant Biology
subject: FOS: Biological sciences

description: Phase1 ANOVA parsed by analyte and cell line. (PDF 78Â kb)
COMMUNITY-ACQUIRED THORACIC EMPYEMA – DOES MICROBIOLOGICAL IDENTIFICATION MATTER?
Creators: name: Silva, David
name: Costa, Ana Rita
name: Santos Silva, João
name: Reis, João Eurico
name: Emiliano, Madalena
name: Calvinho, Paulo
name: Cardoso, João
Publisher: name: Portuguese Journal of Cardiac Thoracic and Vascular Surgery
Year: 2022

description: Objectives: To describe the clinical characteristics, comorbidities and clinical outcome of hospitalized patients with the diagnosis of community acquired thoracic empyema in our hospital, with particular emphasis on the impact of identification of the causative agent. Methods: We performed a retrospective review of the clinical files of hospitalized adult patients diagnosed with community acquired thoracic empyema between 2012 and 2016. Results: A total of 81 patients (64 men and 17 women), with a mean age of 54.6+-17.3 years, were included in this study. It was possible to identify the microbiological agent in 59.3% (n=48) of the patients. The median length of hospital stay was 29 days (P25=20 and P75=44.5) and a tendency to longer duration was seen in patients with a microbiological isolation (32 days vs 23 days; p=0.056). No significant difference was observed between patients with and without microbiological isolation, regarding the mortality. Conclusion: In this group of patients a positive pleural fluid culture tends to be associated with longer lengths of hospital stay, which may lead to speculation that they were more advanced infectious processes at the time of diagnosis.
description: Portuguese Journal of Cardiac Thoracic and Vascular Surgery, Vol. 29 No. 1 (2022): Jan - Mar
MANAGEMENT OF THE UPPER LIMB ARTERIOVENOUS MALFORMATIONS
Creators: name: Pinheiro, Marina
name: Carreira, Mariana
name: Rocha-Neves, João
Publisher: name: Portuguese Journal of Cardiac Thoracic and Vascular Surgery
Year: 2022

description: Arteriovenous malformations (AVMs) involving the upper limb constitute 10% of the total AVMs. In the upper limb, AVMs are more frequent in the hand than in the arm, being the hand one of the body’s regions more frequently associated with AVMs, coming after the head and neck. The total prevalence of the upper limb AVMs remains unknown and there is currently no definitive consensus for the treatment of upper limb AVMs. The purpose of this study was to review the best evidence of the treatment for the upper limb AVMs and describe their clinical characteristics and diagnosis. The majority of patients with asymptomatic AVMs follows a conservative management. In the symptomatic patients, the treatment with surgery and or chemical embolization is beneficial. The amputation can be necessary in the case of life-threatening and massive AVMs, constituting the first step in patient's rehabilitation. Although the most common option for the management of symptomatic or functional AVMs is the embolo-sclerotherapy combined with surgery, different outcomes should be taken into account to plan the treatment, specially the presence of symptoms, bleeding and heart failure.
description: Portuguese Journal of Cardiac Thoracic and Vascular Surgery, Vol. 29 No. 1 (2022): Jan - Mar
CARDIAC PAPILLARY FIBROELASTOMA: A CASE WITH UNPRECEDENTED SPREAD
Creators: name: Lopes Cardoso, João
name: Saleiro, Carolina
name: Botelho, Ana
name: E. Antunes, Pedro
name: Gonçalves, Lino
Publisher: name: Portuguese Journal of Cardiac Thoracic and Vascular Surgery
Year: 2022

description: Introduction: Papillary fibroelastomas (PFE) are a rare primary cardiac neoplasm, out of which multifocal PFE constitute a small minority of cases. These benign masses are commonly found on valvular surfaces, particularly the aortic valve. Clinical case: We present a patient with a history of embolic stroke and intra-cardiac masses. Multimodal imaging revealed multiple nodules with extensive intra-cardiac distribution. All nodules were successfully removed without valve dysfunction. Conclusion: This is a unique case of multiple PFE involving intracardiac cavities as well as all valvular structures.
description: Portuguese Journal of Cardiac Thoracic and Vascular Surgery, Vol. 29 No. 1 (2022): Jan - Mar
AORTIC VALVE REGURGITATION FOLLOWING BLUNT CHEST TRAUMA
Creators: name: Brandão, Carlos M. A.
name: Steffen, Samuel
name: Pomerantzeff, Pablo M. A.
name: Jatene, Fábio B.
Publisher: name: Portuguese Journal of Cardiac Thoracic and Vascular Surgery
Year: 2022

description: .
description: Portuguese Journal of Cardiac Thoracic and Vascular Surgery, Vol. 29 No. 1 (2022): Jan - Mar
ENDOBRONCHIAL TUBERCULOSIS
Creators: name: Martins, Joana
name: Carvalho, Carlos
name: Freitas, Francisco
name: Monteiro, Paula
Publisher: name: Portuguese Journal of Cardiac Thoracic and Vascular Surgery
Year: 2022

description: Videobronchofibroscopy of a Chinese 74-year-old woman showing abundant whitish plaques in the vocal cords with antraconic lesions extending throughout the tracheal pathway and bronchial trees, predominantly in the upper left lobe, compatible with Endobronchial My- cobacterium tuberculosis. The evolution and prognosis varies, from complete resolution to severe endobronchial stenosis.
description: Portuguese Journal of Cardiac Thoracic and Vascular Surgery, Vol. 29 No. 1 (2022): Jan - Mar