cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 7: Table S6. of
                     De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)
Creators: name: Camargo, Roberto
name: Herai, Roberto
name: Santos, Luana
name: Bento, Flavia
name: Lima, Joni
name: Marques-Souza, Henrique
name: Figueira, Antonio
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Hematology
subject: Plant Biology
subject: Computational Biology

description: List of genes associated with RNAi mechanism identified in the T. absoluta assembled transcriptome at E-value < eâ  30 using homologues, particularly from Bombyx mori. FPKM values for each transcript normalized per library is presented. Red rows represent undetected genes within the T. absoluta transcriptome for all sequenced stages, while grey rows are those that did not reach the set E-value < eâ  30. (DOCX 66 kb)
Magnoculus guatemalae
Creators: name: Pérez-Hernández, Cisteil X.
name: Zaragoza-Caballero, Santiago
name: Romo-Galicia, Alberto
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lampyridae
Magnoculus
Magnoculus guatemalae

description: Magnoculus guatemalae (Gorham, 1880)
MEXICO: VE; Guatemala
= Megalophthalmus guatemalae Gorham, 1880
description: Published as part of Pérez-Hernández, Cisteil X., Zaragoza-Caballero, Santiago & Romo-Galicia, Alberto, 2022, Updated checklist of the fireflies (Coleoptera: Lampyridae) of Mexico, pp. 291-317 in Zootaxa 5092 (3) on page 298, DOI: 10.11646/zootaxa.5092.3.3, http://zenodo.org/record/5881269
YOSHLARGA OID DAVLAT SIYOSATINI YURITISHDA GENDERGA OID AUDIT O'TKAZISH METODOLOGIYASI
Creators: name: Saidboboyeva, Bibioliya
Publisher: name: Zenodo
Year: 2024

description: Bugungi kunda yoshlar huquqining barqaror rivojlanishi har bir davlat kun tartibining strategik maqsadlaridan biri bo‘lib, davlat yosh avlodning shaxsiy, siyosiy, iqtisodiy, ijtimoiy, madaniy hamda ekologik huquqlari himoya qilinishini ta’minlaydi, ularning jamiyat va davlat hayotida faol ishtirokini rag‘batlantiradi.
Rudolfina rozkosnyi
Creators: name: Paiero, Steven Mark
name: Marshall, Stephen A.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Sphaeroceridae
Rudolfina
Rudolfina rozkosnyi

description: Rudolfina rozkosnyi (Roháček, 1975)
Limosina rozkosnyi – Roháček, 1975: 119.
Material examined
CZECH REPUBLIC • 2 ♂♂, 2 ♀♀; Jezinek Mountains, Velka-Kotlina Valley; 900–1100 m a.s.l.; 16 Aug. 1986; S.A. Marshall leg.; DEBU.
RUSSIA • 1 ♀; Siberia, Altai Reg., ~ 50 km SE of Teletskoya Lake; 1500 m a.s.l.; 13–15 Jul. 1991; S.A. Marshall leg.; wet area; DEBU.
Description
See Roháček (1975).
Distribution
Palaearctic: Austria, Czech Republic, Germany, Norway, Russia (North European Territory, West Siberia), Slovakia, Sweden.
Remarks
This species is here newly recorded from Siberia on the basis of a single female taken in pan traps near the margin of Teletskoya Lake. Previous Russian records are from the Northern European Territory.
description: Published as part of Paiero, Steven Mark & Marshall, Stephen A., 2020, A revision of the genus Rudolfina Roháček (Sphaeroceridae: Limosininae), pp. 1-48 in European Journal of Taxonomy 593 on page 43, DOI: 10.5852/ejt.2020.593, http://zenodo.org/record/3659777
Template-assembled synthetic G-quartets (TASQS)
Creators: name: Nikan, Mehran
Publisher: name: University of British Columbia
Year: 2009

description: Fabrication of functional supramolecular structures requires a certain degree of control which may not be achieved by relying solely on noncovalent interactions. The current study aims to investigate the effect of a rigid cavitand template on morphology, function and stability of lipophilic G-quadruplexes. The first Chapter of this thesis introduces different aspects of G quadruplex chemistry and explains how these structures are particularly suited for the creation of supramolecular architectures. The second Chapter of this thesis presents the synthesis and self-assembly of a new class of supramolecular architectures composed of four guanosines attached to a rigid cavitand template. These structures, named template-assembled synthetic G-quartets (TASQs), were synthesized via the “click” reaction and manifest an ordered topology dictated by the template. The lipophilic TASQs were found to self-associate spontaneously to form a singular basket-like structure in chloroform. Moreover, it was found that TASQs form cation-free G-quartets which exhibit remarkable stability under this condition. The third Chapter of this thesis describes the preparation, characterization and solution study of the cation-bound complexes TASQNa⁺, TASQK⁺, TASQCs⁺, and TASQSr²⁺. Cations play a major role in controlling the morphology and stability of G-quadruplexes. The analysis of the cation-specific structures of TASQs reveals the formation of a monomeric G quartet for Na⁺ and Sr²⁺,a dimeric system for Cs⁺ and a mixture of monomers and dimers for K⁺. The factors governing the formation of these structures were evaluated, the selectivities of TASQs for cations were determined, and the cation-dependent structural transformations were studied. The fourth Chapter describes the efforts towards synthesizing a hydrophilic TASQ via the “click” reaction. The following steps have been taken: 1) a water-soluble cavitand has been successfully synthesized and characterized, which can potentially serve as a hydrophilic template, and 2) two oligonucleotides have been appropriately functionalized and preliminary coupling reactions were attempted. The next phases of this research along with potential future directions are discussed in Chapter five.
Chespirito Ferreira, Keller and Branham 2020
Creators: name: Pérez-Hernández, Cisteil X.
name: Zaragoza-Caballero, Santiago
name: Romo-Galicia, Alberto
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lampyridae
Chespirito

description: Genus Chespirito Ferreira, Keller and Branham, 2020
MTZ: CS, SO, TV
description: Published as part of Pérez-Hernández, Cisteil X., Zaragoza-Caballero, Santiago & Romo-Galicia, Alberto, 2022, Updated checklist of the fireflies (Coleoptera: Lampyridae) of Mexico, pp. 291-317 in Zootaxa 5092 (3) on page 298, DOI: 10.11646/zootaxa.5092.3.3, http://zenodo.org/record/5881269
Additional file 1: Figure S1. of Reliability of breath by breath spirometry and relative flow-time indices for pulmonary function testing in horses
Creators: name: K. Burnheim
name: K. Hughes
name: D. Evans
name: S. Raidal
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Representative volume (green) and flow (pink) traces obtained during spontaneous respiration showing uniform volume and flow traces which would satisfy inclusion criteria for analysis. Note biphasic expiratory and inspiratory respiration. Table S1. Respiratory parameters measured for each of three selected breaths. Data from each breath was evaluated to ensure inclusion criteria were met (â ¤10% difference in inspiratory and expiratory volumes, â ¤10% difference in time to peak inspiratory and expiratory flow (Tpif, Tpef) for the three breaths). Table S2. Definition of relative flow-time variables calculated for each of three selected breaths. Figure S2. Mean difference and 95% confidence intervals between days for absolute measures (respiratory frequency, Rf; tidal volume, Vt; peak inspiratory and expiratory flows, PIF and PEF; time to PEF, Tpef) determined during pulmonary function testing over three consecutive days. Figure S3. Mean difference and 95% confidence intervals between days for relative expiratory flow indices (ratio of time to PEF to expiratory time; Tpef/Te; ratio of time to PEF to total breath duration; Tpef/Tt) determined during pulmonary function testing over three consecutive days. Figure S4. Mean difference and 95% confidence intervals between days for relative flow-time indices determined during pulmonary function testing over. (PDF 525 kb)
Chespirito ballantyneae Ferreira, Keller and Branham 2020
Creators: name: Pérez-Hernández, Cisteil X.
name: Zaragoza-Caballero, Santiago
name: Romo-Galicia, Alberto
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lampyridae
Chespirito
Chespirito ballantyneae

description: Chespirito ballantyneae Ferreira, Keller and Branham, 2020.
MEXICO: PU Endemic
description: Published as part of Pérez-Hernández, Cisteil X., Zaragoza-Caballero, Santiago & Romo-Galicia, Alberto, 2022, Updated checklist of the fireflies (Coleoptera: Lampyridae) of Mexico, pp. 291-317 in Zootaxa 5092 (3) on page 298, DOI: 10.11646/zootaxa.5092.3.3, http://zenodo.org/record/5881269
Additional file 1: of Ligand engagement of Toll-like receptors regulates their expression in cortical microglia and astrocytes
Creators: name: Marinelli, Carla
name: Liddo, Rosa Di
name: Facci, Laura
name: Bertalot, Thomas
name: Conconi, Maria
name: Zusso, Morena
name: Skaper, Stephen
name: Giusti, Pietro
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Figure S1–S4. Figure S1 l-leucyl-l-leucine methyl ester (L-LME) depletes enriched astrocytes of microglia. Following mechanical separation of microglia from the mixed glial cell monolayers, astrocytes were detached, replated, and incubated the next day with 50 mM L-LME for 60 min. Cells were returned to fresh culture medium and processed 24 h later for Iba1 mRNA by RT-PCR. L-LME- treated astrocytes displayed an Iba1 mRNA level of 0.17-fold difference compared to enriched (≥95 %) astrocytes. Parallel sets of cultures were processed for GFAP (red) and Iba1 (green) immunocytochemistry (lower panels). Nuclei are labelled blue with DAPI. Note the loss of residual microglia (arrows) in the L-LME-treated culture. Figure S2 The NF-κB inhibitor Ro-106-9920 blocks LPS-induced TNF-α gene and protein expression in purified rat cortical microglia. Cells were pretreated 30 min with 1 μM Ro-106-9920 (‘Ro-106’), followed by addition of LPS (100 ng/ml final) and incubation continued for a further 6 h. Cells were then collected and processed for mRNA analysis by RT-PCR (left panel) and culture medium for TNF-α content by ELISA (right panel). Values are means ± s.e.m. (n = 3). ***p
Strategies towards carbon-carbon bond formation via tandem hydrothiolation/Kumada cross-coupling
Creators: name: Sabarre, Anthony
Publisher: name: University of British Columbia
Year: 2009

description: Using recently developed methodology from our group, a variety of aryl and aliphatic terminal alkynes were reacted with n-propanethiol to undergo catalytic alkyne hydrothiolation in the presence Tp*Rh(PPh₃)₂ The alkynes examined afforded the branched isomer with high regioselectivity and moderate-to-high yield. Unsubstituted aryl alkynes, or those containing an electron-donating substituent at the para position, gave the branched vinyl sulfide in good isolated yield. In contrast, vinyl sulfides derived from aryl alkynes containing an electron-withdrawing substituent at the para position showed a decrease in reactivity and yield. The aliphatic alkynes that were investigated gave the desired branched vinyl sulfide in good yield. The isolated vinyl sulfides were then subjected to Kumada cross-coupling in the presence of NiCl₂(PPh₃)₂ with various aryl and aliphatic Grignard reagents, affording the corresponding 1,1 -disubstituted olefins. While benzyl-, phenyl- and trimethylsilylmagnesium halides were shown to be suitable cross-coupling partners, phenylethynyl-, vinyl- and n-butylmagnesium halides were not. Once the viability for the Kumada cross-coupling of vinyl sulfides was established, a one-pot protocol was investigated. It was shown that the one-pot procedure afforded the desired 1,1 -disubstituted olefin from readily available terminal alkynes in similar, and in some cases superior, yields than the two-step process.
Additional file 9: Table S8. of
                     De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)
Creators: name: Camargo, Roberto
name: Herai, Roberto
name: Santos, Luana
name: Bento, Flavia
name: Lima, Joni
name: Marques-Souza, Henrique
name: Figueira, Antonio
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Plant Biology

description: List of genes associated with biosynthesis of the two major hormone classes sesquiterpenoid juvenile (JH) and the ecdysteroid hormones identified in the T. absoluta assembled transcriptome at E-value < eâ  30 using homologues particularly from Bombyx mori. FPKM values for each transcript normalized per library is presented. Red rows represent undetected genes within the T. absoluta transcriptome for all sequenced stages, while grey rows are those that did not reach the set E-value < eâ  30. (PDF 118 kb)
Chespirito lloydi Ferreira, Keller and Branham 2020
Creators: name: Pérez-Hernández, Cisteil X.
name: Zaragoza-Caballero, Santiago
name: Romo-Galicia, Alberto
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lampyridae
Chespirito
Chespirito lloydi

description: Chespirito lloydi Ferreira, Keller and Branham, 2020.
MEXICO: DG Endemic
description: Published as part of Pérez-Hernández, Cisteil X., Zaragoza-Caballero, Santiago & Romo-Galicia, Alberto, 2022, Updated checklist of the fireflies (Coleoptera: Lampyridae) of Mexico, pp. 291-317 in Zootaxa 5092 (3) on page 298, DOI: 10.11646/zootaxa.5092.3.3, http://zenodo.org/record/5881269
Chespirito zaragozai Ferreira, Keller and Branham 2020
Creators: name: Pérez-Hernández, Cisteil X.
name: Zaragoza-Caballero, Santiago
name: Romo-Galicia, Alberto
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lampyridae
Chespirito
Chespirito zaragozai

description: Chespirito zaragozai Ferreira, Keller and Branham, 2020.
MEXICO: CS Endemic
description: Published as part of Pérez-Hernández, Cisteil X., Zaragoza-Caballero, Santiago & Romo-Galicia, Alberto, 2022, Updated checklist of the fireflies (Coleoptera: Lampyridae) of Mexico, pp. 291-317 in Zootaxa 5092 (3) on page 298, DOI: 10.11646/zootaxa.5092.3.3, http://zenodo.org/record/5881269
Additional file 5: Table S5. of
                     De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)
Creators: name: Camargo, Roberto
name: Herai, Roberto
name: Santos, Luana
name: Bento, Flavia
name: Lima, Joni
name: Marques-Souza, Henrique
name: Figueira, Antonio
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Plant Biology

description: Primer sequences of 23 genes differentially expressed between the developmental stages with expected product size, and three gene references used in RT-qPCR to validate differences in read counts among libraries. Annotation is derived from Blast2Go or manual. (PDF 53 kb)
P3K14C dataset in DGGS cells of resolution 14 [Great Britain]
Creators: name: Jendryke, Michael
name: Gago-Silva, Ana
name: dos Santos Manuel, João Carlos
name: Caspari, Gino
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 430106
subject: Digital archaeology
classificationCode: 370403
subject: Geoscience data visualisation
classificationCode: 460402
subject: Data and information privacy
classificationCode: 460403
subject: Data security and protection

description: Archaeological heritage worldwide is threatened through deliberate destruction in particular site looting making the location of archaeological sites potentially sensitive data. At the same time, public information about site locations are important for heritage management, as well as agricultural and urban development. Finding a balance between revealing detailed site locations and not providing data at all is a difficult task. Here we provide an approach to obfuscate archaeological site location data facilitated through a Discrete Global Grid System. We then apply the new obfuscation method to the global p3k14c data set. Veiling the locations of heritage sites with a Discrete Global Grid System allows tiered accuracy access for different stakeholders tailored to their respective needs as well as legal constraints and requirements of administrations. Discrete Global Grid System based obfuscation is globally scalable, consistent, reproducible, and can address the current heterogeneity of obfuscation methods.
P3K14C dataset in DGGS cells of resolution 10 [Australia]
Creators: name: Jendryke, Michael
name: Gago-Silva, Ana
name: dos Santos Manuel, João Carlos
name: Caspari, Gino
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 430106
subject: Digital archaeology
classificationCode: 370403
subject: Geoscience data visualisation
classificationCode: 460402
subject: Data and information privacy
classificationCode: 460403
subject: Data security and protection

description: Archaeological heritage worldwide is threatened through deliberate destruction in particular site looting making the location of archaeological sites potentially sensitive data. At the same time, public information about site locations are important for heritage management, as well as agricultural and urban development. Finding a balance between revealing detailed site locations and not providing data at all is a difficult task. Here we provide an approach to obfuscate archaeological site location data facilitated through a Discrete Global Grid System. We then apply the new obfuscation method to the global p3k14c data set. Veiling the locations of heritage sites with a Discrete Global Grid System allows tiered accuracy access for different stakeholders tailored to their respective needs as well as legal constraints and requirements of administrations. Discrete Global Grid System based obfuscation is globally scalable, consistent, reproducible, and can address the current heterogeneity of obfuscation methods.
Subset of DGGS cells for coordinate obfuscation
Creators: name: Jendryke, Michael
name: dos Santos Manuel, João Carlos
name: Gago-Silva, Ana
name: Caspari, Gino
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 430106
subject: Digital archaeology
classificationCode: 370403
subject: Geoscience data visualisation
classificationCode: 460402
subject: Data and information privacy
classificationCode: 460403
subject: Data security and protection

description: Archaeological heritage worldwide is threatened through deliberate destruction in particular site looting making the location of archaeological sites potentially sensitive data. At the same time, public information about site locations are important for heritage management, as well as agricultural and urban development. Finding a balance between revealing detailed site locations and not providing data at all is a difficult task. Here we provide an approach to obfuscate archaeological site location data facilitated through a Discrete Global Grid System. We then apply the new obfuscation method to the global p3k14c data set. Veiling the locations of heritage sites with a Discrete Global Grid System allows tiered accuracy access for different stakeholders tailored to their respective needs as well as legal constraints and requirements of administrations. Discrete Global Grid System based obfuscation is globally scalable, consistent, reproducible, and can address the current heterogeneity of obfuscation methods.
Aspisoma Laporte 1833
Creators: name: Pérez-Hernández, Cisteil X.
name: Zaragoza-Caballero, Santiago
name: Romo-Galicia, Alberto
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lampyridae
Aspisoma

description: Genus Aspisoma Laporte, 1833
NAR: TM; MTZ: SO, TV, SS, CS; NTR: PL, BB, VE, YU
= Nyctophanes Dejean, 1833
= Aspidosoma Lacordaire, 1857
description: Published as part of Pérez-Hernández, Cisteil X., Zaragoza-Caballero, Santiago & Romo-Galicia, Alberto, 2022, Updated checklist of the fireflies (Coleoptera: Lampyridae) of Mexico, pp. 291-317 in Zootaxa 5092 (3) on page 299, DOI: 10.11646/zootaxa.5092.3.3, http://zenodo.org/record/5881269
Silver (I) catalyzed cycloisomerizations of enesulfonamides and enecarbamates
Creators: name: Guieb, Krystle Dawn
Publisher: name: University of British Columbia
Year: 2009

description: Eight substrates with the general structure 11.0 were synthesized. The substrates differed with respect to the heteroatom tether (X = oxygen or nitrogen), nitrogen protecting group (PG = p-toluenesulfonamide, tert-butylcarbamate, methyl carbamate), and substitution on the ring (Y = H or Ph). Silver (I)-catalyzed cycloisomerizations of the enesulfonamide and enecarbamate substrates successfully gave eight diene products ll.la-h in poor to good yields (36-81%). Diene ll.Ia was also further subjected to the Diels Alder reaction, with acrolein and methacrolein to give tricyclic cycloadducts 11.21a and 11.22a.
Aspisoma aegrota
Creators: name: Pérez-Hernández, Cisteil X.
name: Zaragoza-Caballero, Santiago
name: Romo-Galicia, Alberto
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lampyridae
Aspisoma
Aspisoma aegrota

description: Aspisoma aegrota (Gorham, 1880) MEXICO: CS, HG, JC, MI, MO, OA, PU, SL, TM, VE; Costa Rica; Guatemala; Nicaragua; Panamá; Colombia
= Aspidosoma aegrotum Gorham, 1880
description: Published as part of Pérez-Hernández, Cisteil X., Zaragoza-Caballero, Santiago & Romo-Galicia, Alberto, 2022, Updated checklist of the fireflies (Coleoptera: Lampyridae) of Mexico, pp. 291-317 in Zootaxa 5092 (3) on page 299, DOI: 10.11646/zootaxa.5092.3.3, http://zenodo.org/record/5881269
Additional file 6: Figure S1. of
                     De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)
Creators: name: Camargo, Roberto
name: Herai, Roberto
name: Santos, Luana
name: Bento, Flavia
name: Lima, Joni
name: Marques-Souza, Henrique
name: Figueira, Antonio
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Science Policy
subject: Plant Biology

description: Comparison of relative gene expression based on RT-qPCR or RNAseq among developmental stages. Based on the RNAseq data, 23 contigs with significant differential expression between developmental stages (egg, larval and adults) were chosen to be validated by RT-qPCR. Relative expression of 18 genes (2406, 6681, 10806, 11301, 12828, 13135, 16411, 16428, 17745, 20172, 21584, 23824, 26572, 36206, 36279, 38086, 50455, and 55173; Additional File 5: Table S5) based on RT-qPCR is represented by whiskers-box plots with standard deviations, and RNAseq data is represented by fold-differences. Whisker-box plots display average values from three biological replicates, and the box contain 50 % of the variation among samples, while the remaining 50 % are divided between the upper quartile (25 %) and the lower quartile (25 %), represented by error bars (whiskers). (PDF 66 kb)
P3K14C dataset in DGGS cells of resolution 8 [globally]
Creators: name: Jendryke, Michael
name: Gago-Silva, Ana
name: dos Santos Manuel, João Carlos
name: Caspari, Gino
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 430106
subject: Digital archaeology
classificationCode: 370403
subject: Geoscience data visualisation
classificationCode: 460402
subject: Data and information privacy
classificationCode: 460403
subject: Data security and protection

description: Archaeological heritage worldwide is threatened through deliberate destruction in particular site looting making the location of archaeological sites potentially sensitive data. At the same time, public information about site locations are important for heritage management, as well as agricultural and urban development. Finding a balance between revealing detailed site locations and not providing data at all is a difficult task. Here we provide an approach to obfuscate archaeological site location data facilitated through a Discrete Global Grid System. We then apply the new obfuscation method to the global p3k14c data set. Veiling the locations of heritage sites with a Discrete Global Grid System allows tiered accuracy access for different stakeholders tailored to their respective needs as well as legal constraints and requirements of administrations. Discrete Global Grid System based obfuscation is globally scalable, consistent, reproducible, and can address the current heterogeneity of obfuscation methods.
Trachyopella opuntiae
Creators: name: Paiero, Steven Mark
name: Marshall, Stephen A.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Sphaeroceridae
Trachyopella
Trachyopella opuntiae

description: Trachyopella opuntiae (Richards, 1967)
Leptocera (Trachyopella) opuntiae Richards, 1967: 531.
Remarks
Richards (1967) originally described this species as a Trachyopella Duda, 1918 (then a subgenus of Leptocera Olivier, 1813), a placement that was followed by Roháček & Marshall (1986) in their review of Holarctic Trachyopella. Pitkin (1989) transferred opuntiae to Rudolfina, in view of its modified female cerci. Examination of type specimens, including male and female terminalia, supports the treatment of this species as a Trachyopella.
description: Published as part of Paiero, Steven Mark & Marshall, Stephen A., 2020, A revision of the genus Rudolfina Roháček (Sphaeroceridae: Limosininae), pp. 1-48 in European Journal of Taxonomy 593 on page 45, DOI: 10.5852/ejt.2020.593, http://zenodo.org/record/3659777
Additional file 1 of Associations of RBC counts and incidence of DVT in patients with spinal cord injury: a five year observational retrospective study
Creators: name: Jinlong, Zhang
name: Cheng, Wang
name: Chengqi, He
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Cell Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Mathematical Sciences not elsewhere classified
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Supplementary Material 1
P3K14C dataset in DGGS cells of resolution 12 [Great Britain]
Creators: name: Jendryke, Michael
name: Gago-Silva, Ana
name: dos Santos Manuel, João Carlos
name: Caspari, Gino
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 430101
subject: Archaeological science
classificationCode: 401399
subject: Geomatic engineering not elsewhere classified
classificationCode: 460403
subject: Data security and protection
classificationCode: 430106
subject: Digital archaeology
classificationCode: 370403
subject: Geoscience data visualisation
classificationCode: 460402
subject: Data and information privacy

description: Archaeological heritage worldwide is threatened through deliberate destruction in particular site looting making the location of archaeological sites potentially sensitive data. At the same time, public information about site locations are important for heritage management, as well as agricultural and urban development. Finding a balance between revealing detailed site locations and not providing data at all is a difficult task. Here we provide an approach to obfuscate archaeological site location data facilitated through a Discrete Global Grid System. We then apply the new obfuscation method to the global p3k14c data set. Veiling the locations of heritage sites with a Discrete Global Grid System allows tiered accuracy access for different stakeholders tailored to their respective needs as well as legal constraints and requirements of administrations. Discrete Global Grid System based obfuscation is globally scalable, consistent, reproducible, and can address the current heterogeneity of obfuscation methods.
Aspisoma aelianum
Creators: name: Pérez-Hernández, Cisteil X.
name: Zaragoza-Caballero, Santiago
name: Romo-Galicia, Alberto
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lampyridae
Aspisoma
Aspisoma aelianum

description: Aspisoma aelianum (Gorham, 1884)
MEXICO: JC; Guatemala
= Aspidosoma aelianum Gorham, 1884
description: Published as part of Pérez-Hernández, Cisteil X., Zaragoza-Caballero, Santiago & Romo-Galicia, Alberto, 2022, Updated checklist of the fireflies (Coleoptera: Lampyridae) of Mexico, pp. 291-317 in Zootaxa 5092 (3) on page 299, DOI: 10.11646/zootaxa.5092.3.3, http://zenodo.org/record/5881269
Leptocera (Acuminiseta) prominens Duda 1925
Creators: name: Paiero, Steven Mark
name: Marshall, Stephen A.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Sphaeroceridae
Leptocera
Leptocera prominens

description: Leptocera (Acuminiseta) prominens Duda, 1925
Leptocera (Acuminiseta) prominens Duda, 1925: 124.
Remarks
Leptocera (Acuminiseta) prominens was provisionally treated as Rudolfina by Roháček et al. (2001), who noted that Acuminiseta Duda, 1925 does not occur in the New World. This species does not fit into Rudolfina as defined here, but belongs elsewhere in the Archiceroptera complex and will be treated in a later paper.
description: Published as part of Paiero, Steven Mark & Marshall, Stephen A., 2020, A revision of the genus Rudolfina Roháček (Sphaeroceridae: Limosininae), pp. 1-48 in European Journal of Taxonomy 593 on page 45, DOI: 10.5852/ejt.2020.593, http://zenodo.org/record/3659777
Nonlinear optical spectroscopic studies of polymer surface properties and competition adsorption of toluene and heptane on silica surfaces
Creators: name: Hua, Rui
Publisher: name: University of British Columbia
Year: 2008

description: Surface properties of polymers and competition adsorption of toluene and heptane on silica were studied using IR-visible sum frequency generation (SFG) vibrational spectroscopy. SFG is intrinsically surface sensitive because the second-order optical process is forbidden in media with inversion symmetry, such as bulk polymers and liquids. This nonlinear optical technique provides surface vibrational spectra under ambient conditions without the need of an ultra-high vacuum environment. Polymer surface properties, including surface relaxation temperature of poly(methyl methacrylate) (PMMA) and surface electronic states of poly[2-methoxy, 5-ethyl (2’-hexyloxy) para phenylenevinylene] (MEH-PPV), were investigated. It was found that there are significant differences between the surface and bulk properties for these polymers. For PMMA, a new surface structure relaxation was identified at 67°C, which does not match any known structure relaxation temperatures for bulk PMMA and is 40°C below the bulk glass transition temperature. For MEH-PPV, SFG electronic spectra, which were obtained by scanning the frequencies of incident visible and JR beams, indicated that the electronic states at the polymer/solid and air/polymer interfaces are red-shifted with respect to that of the bulk. Finally, SFG was employed to study the competition adsorption of toluene and heptane on silica surfaces. Experimental data showed that heptane adsorbed favorably compared to toluene. Using a Langmuir adsorption isotherm, the changes of Gibbs free energy for the adsorption processes were calculated to be —12.1 ± 1.8 (kJ/mol) for toluene and —16.5 ± 2.3 (kJ/mol) for heptane.
GREEN SYNTHESIS OF SILVER NANOPARTICLES FROM MURRAYAKOENIGII L. LEAF EXTRACT AND EVALUATION OF ITS ANTIDIABETIC PROPERTIES
Creators: name: Ashok Kumar Tripathi
name: Jhansee Mishra
Publisher: name: Zenodo
Year: 2024
Subjects: Silver Nanoparticle, Antidiabetic Action, TEM, SEM, MurrayaKoenigii.

description: Abstract

One of the most prevalent metabolic diseases, type 2 diabetes mellitus is typified by elevated blood sugar levels brought on by either impaired insulin action or secretion, or by both. Although metformin is the most widely prescribed medication for Type 2 Diabetes Mellitus, people respond poorly and slowly to it due to its sluggish mechanism of action and numerous adverse effects. Presently, researchers are attempting to overcome these constraints through the development of nanomedicine. This study intends to clarify the therapeutic potential of silver nanoparticles as an antidiabetic medication on streptozotocin-induced diabetic BALB/c mice. It reports a unique synthesis of silver nanoparticles using MurrayaKoenigii aqueous extract. Using MurrayaKoenigii, green production of silver nanoparticles against diabetes was performed. FT-IR, SEM, TEM, and XRD were used to characterize the produced silver nanoparticles. The outcomes demonstrated that the produced particles were nanoscale in size and spherical in shape. The particles exhibit greater level antidiabetic potential, according to the investigation on their in vivo antidiabetic activities. It also displayed reduced cytotoxicity and increased antioxidant activity. The conclusion was that the greenly produced silver nanoparticles had potential as a phytomedicine to cure diabetes.
Obfuscate.ipynb
Creators: name: Jendryke, Michael
name: Gago-Silva, Ana
name: dos Santos Manuel, João Carlos
name: Caspari, Gino
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 430106
subject: Digital archaeology
classificationCode: 370403
subject: Geoscience data visualisation
classificationCode: 460402
subject: Data and information privacy
classificationCode: 460403
subject: Data security and protection

description: Archaeological heritage worldwide is threatened through deliberate destruction in particular site looting making the location of archaeological sites potentially sensitive data. At the same time, public information about site locations are important for heritage management, as well as agricultural and urban development. Finding a balance between revealing detailed site locations and not providing data at all is a difficult task. Here we provide an approach to obfuscate archaeological site location data facilitated through a Discrete Global Grid System. We then apply the new obfuscation method to the global p3k14c data set. Veiling the locations of heritage sites with a Discrete Global Grid System allows tiered accuracy access for different stakeholders tailored to their respective needs as well as legal constraints and requirements of administrations. Discrete Global Grid System based obfuscation is globally scalable, consistent, reproducible, and can address the current heterogeneity of obfuscation methods.
Aspisoma depictum
Creators: name: Pérez-Hernández, Cisteil X.
name: Zaragoza-Caballero, Santiago
name: Romo-Galicia, Alberto
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lampyridae
Aspisoma
Aspisoma depictum

description: Aspisoma depictum (Gorham, 1880)
MEXICO: CM, CS, GR, MI, OA, QR, TM, VE; Costa Rica
= Aspidosoma depictum Gorham, 1880
description: Published as part of Pérez-Hernández, Cisteil X., Zaragoza-Caballero, Santiago & Romo-Galicia, Alberto, 2022, Updated checklist of the fireflies (Coleoptera: Lampyridae) of Mexico, pp. 291-317 in Zootaxa 5092 (3) on page 299, DOI: 10.11646/zootaxa.5092.3.3, http://zenodo.org/record/5881269
Coverage Manifold Estimation in Cellular Networks via Conditional GANs
Creators: name: Goyal, Veni
Publisher: name: Purdue University Graduate School
Year: 2024
Subjects: classificationCode: 461103
subject: Deep learning
classificationCode: 460609
subject: Networking and communications
classificationCode: 401404
subject: Industrial engineering

description: This research introduces an approach utilizing a novel conditional generative adversarial network (cGAN) tailored specifically for the prediction of cellular network coverage. In comparison to state-of-the-art method convolutional neural networks (CNNs), our cGAN model offers a significant improvement by translating base station locations within any Region-of-Interest (RoI) into precise coverage probability values within a designated region-of-evaluation (RoE). By leveraging base station location data from diverse geographical and infrastructural landscapes spanning regions like India, the USA, Germany, and Brazil, our model demonstrates superior predictive performance compared to existing CNN-based approaches. Notably, the prediction error, as quantified by the L1 norm, is reduced by two orders of magnitude in comparison to state-of-the-art CNN models.Furthermore, the coverage manifolds generated by our cGAN model closely resemble those produced by conventional simulation methods, indicating a substantial advancement in both prediction accuracy and visual fidelity. This achievement underscores the potential of cGANs in enhancing the precision and reliability of cellular network performance prediction, offering promising implications for optimizing network planning and deployment strategies.
Aspisoma diaphana
Creators: name: Pérez-Hernández, Cisteil X.
name: Zaragoza-Caballero, Santiago
name: Romo-Galicia, Alberto
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lampyridae
Aspisoma
Aspisoma diaphana

description: Aspisoma diaphana (Gorham, 1880)
MEXICO: OA, PU, VE; Belize; Guatemala; Honduras; Nicaragua
= Aspidosoma diaphanum Gorham, 1880
description: Published as part of Pérez-Hernández, Cisteil X., Zaragoza-Caballero, Santiago & Romo-Galicia, Alberto, 2022, Updated checklist of the fireflies (Coleoptera: Lampyridae) of Mexico, pp. 291-317 in Zootaxa 5092 (3) on page 299, DOI: 10.11646/zootaxa.5092.3.3, http://zenodo.org/record/5881269
Additional file 5: of Engineering high Zn in tomato shoots through expression of AtHMA4 involves tissue-specific modification of endogenous genes
Creators: name: Kendziorek, Maria
name: Klimecka, Maria
name: Barabasz, Anna
name: Borg, Sören
name: Rudzka, Justyna
name: Paweł Szczęsny
name: Antosiewicz, Danuta
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Plant Biology

description: Reference gene selection for RT-qPCR. (PDF 63 kb)
Investigating new reactions for coordinated dinitrogen
Creators: name: Park, Rosa
Publisher: name: University of British Columbia
Year: 2008

description: The chemistry of the tantalum dinitrogen complex ([NPN]Ta)₂ (μ-H)₂ (μ-η¹:η²-N₂ )Ta-[NPN], 1, (where [NPN] represents the acyclic tridentate ligand [(PhNSiMe₂ CH₂ )₂ -PPh]² -), with primary alkenes, group IV and V metallocene complexes, and GaCp* is explored. The reaction of 1 with 1-pentene and 1-hexene occurs via olefin-insertion into the metal-hydride bond to give two new complexes, ([NPN]Ta(CH₂)₄CH₃)₂ (μ-η¹:η¹-N₂ ), 10, and ([NPN]Ta(CH₂ )₅CH₃)₂ (μ-η¹:η¹-N₂ ), 11, which were characterized using NMR spectroscopy. The solid-state structure of 11 was established and revealed that N₂ has been transformed into a bridging end-on mode. In contrast to its G symmetry in solution, the solid-state structure of 11 is C, symmetric; a VT-NMR study was performed and showed that 11 exists as an equilibrium between two isomers in solution: a C, symmetric isomer 11A,which is the predominant isomer at room temperature, and a C, symmetric isomer 11B,which is the minor isomer. The reactivity of 1 with group IV and V metallocenes was investigated. The reaction of 1 with Cp₂ Hf(PMe₃)(η²-Me₃SiCCSiMe₃) produces [N(μ-P=N)N]Ta(μ-H)₂(μ-N(Hf-Cp₂ ))Ta[NPN], 14, in which N₂ is cleaved and new Hf-N and P=N bonds have formed. The reaction of 1 with group V metallocene hydrides Cp₂ MH₃ (M Nb, Ta) was also attempted however these complexes do not react with 1. The reaction of 1 with GaCp* produces a new complex, [NPN]Ta(μ-N(GaCp*))Ta(=NPμ)[NPIA,-N], 18, which was characterized using NMR spectroscopy. Complex 18 decomposes over several days in solution, and one product of decomposition that was isolated was [(PhNH)(NPμ-N)Ta]₂ , 19. The solid-state structure of 19 showed that the [NPN] ligand was cleaved at the N-Si bond, similar to that observed for the reaction of 1 with 9-BBN and HB(C₆H₅)₂ . A mechanism for the formation of complexes 18 and 19 is proposed.
Additional file 4: Table S4. of
                     De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)
Creators: name: Camargo, Roberto
name: Herai, Roberto
name: Santos, Luana
name: Bento, Flavia
name: Lima, Joni
name: Marques-Souza, Henrique
name: Figueira, Antonio
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: Computational Biology

description: Kegg-based metabolic pathway annotation for differentially expressed transcripts (DET) for pair-wise comparisons between developmental stages of Tuta absoluta by Blast2Go. (PDF 10 kb)
Aspisoma ignitum
Creators: name: Pérez-Hernández, Cisteil X.
name: Zaragoza-Caballero, Santiago
name: Romo-Galicia, Alberto
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Lampyridae
Aspisoma
Aspisoma ignitum

description: Aspisoma ignitum (Linnaeus, 1767)
USA; MEXICO: CM, MO, PU, SL, VE, YU; Central America; Lesser Antilles; Brazil; Belize; Colombia; Cuba; Dominican Republic (Hispaniola); French Guiana; Puerto Rico; Venezuela
= Lampyris ignitum Linnaeus, 1767
= Aspidosoma ignitum Linnaeus, 1767
= Aspisoma polyzona Chevrolat, 1834
= Nyctophanes ignitum Motschulsky, 1854
description: Published as part of Pérez-Hernández, Cisteil X., Zaragoza-Caballero, Santiago & Romo-Galicia, Alberto, 2022, Updated checklist of the fireflies (Coleoptera: Lampyridae) of Mexico, pp. 291-317 in Zootaxa 5092 (3) on page 299, DOI: 10.11646/zootaxa.5092.3.3, http://zenodo.org/record/5881269
Brexit and the European eel
Creators: name: Stein, Florian
name: Bunt, David
Publisher: name: figshare
Year: 2022
Subjects: classificationCode: 310399
subject: Ecology not elsewhere classified

description: The UK’s withdrawal from the EU has caused the greatest upheaval in its trading relationships for two generations. Fish and fisheries were one of the Brexit battlegrounds and we have all seen in the media, the queues of lorries at ports in January and the French fishing fleet blockade of Jersey in May. This article describes the impact on just one species, the migratory European eel, Anguilla anguilla.
Additional file 6: Table S4. of The properties of spontaneous mutations in the opportunistic pathogen Pseudomonas aeruginosa
Creators: name: Dettman, Jeremy
name: Sztepanacz, Jacqueline
name: Rees Kassen
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 60506 Virology

description: Results of model for effect of variables on context-dependent mutation rates of focal nucleotide. (DOC 30 kb)
Additional file 11: Table S10. of
                     De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)
Creators: name: Camargo, Roberto
name: Herai, Roberto
name: Santos, Luana
name: Bento, Flavia
name: Lima, Joni
name: Marques-Souza, Henrique
name: Figueira, Antonio
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology

description: Primers used to amplify target-gene fragments flanked by attL1 and attL2 sequences (underlined) for each gene, with expected amplicon size in base pairs (bp) and annealing temperature adopted. (PDF 49 kb)
Search for same-sign top quark pairs with the ATLAS detector at the LHC
Creators: name: Cavalli, Noemi
Publisher: name: TU Dortmund
Year: 2023
Subjects: subject: Hochenergiephysik
subject: 530
subject: Hochenergiephysik
subject: ATLAS Collaboration
subject: LHC

description: In this thesis, a search for same-sign top quark pairs produced according to the Standard Model Effective Field Theory (SMEFT) is presented. The analysis is carried out within the ATLAS Collaboration using collision data at a center-of-mass energy of s = 13 TeV, collected by the ATLAS detector during the Run 2 of the Large Hadron Collider, corresponding to an integrated luminosity of 140 fb−1. Three SMEFT operators are considered in the analysis, namely ORR, O(1)LR, and O(8)LR. The signal associated to same-sign top pairs is searched in the dilepton channel, with the top quarks decaying via t → W+b → ℓ+νb, leading to a final state signature composed of a pair of hightransverse momentum same-sign leptons and b-jets. Deep Neural Networks are employed in the analysis to enhance sensitivity to the different SMEFT operators and to perform signal-background discrimination. No significant excess with respect to the Standard Model predictions is observed, therefore upper limits are placed on the signal production cross section and on the Wilson Coefficients associated to the considered EFT operators. The observed upper limit at 95% of confidence level on same sign top pairs production cross section times Branching Ratio is 0.86 fb. The observed upper limits at 95% of confidence level on the SMEFT parameters are 0.005, 0.015 and 0.031 ([TeV/Λ]2) for the Wilson Coefficients associated to ORR, O(1)LR and O(8)LR respectively. This is the first result of the ATLAS Collaboration concerning the search for same-sign top quark pairs production in proton-proton collision data at s = 13 TeV, in the framework of the SMEFT.