cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Effective dimensionality reduction for Greeks computation using Randomized QMC
Creators: name: Albieri, Luca
name: Kucherenko, Sergei
name: Scoleri, Stefano
name: Bianchetti, Marco
Publisher: name: arXiv
Year: 2025
Subjects: subject: Computational Finance (q-fin.CP)
subject: FOS: Economics and business

description: Global sensitivity analysis is employed to evaluate the effective dimension reduction achieved through Chebyshev interpolation and the conditional pathwise method for Greek estimation of discretely monitored barrier options and arithmetic average Asian options. We compare results from finite difference and Monte Carlo methods with those obtained by using randomized Quasi Monte Carlo combined with Brownian bridge discretization. Additionally, we investigate the benefits of incorporating importance sampling with either the finite difference or Chebyshev interpolation methods. Our findings demonstrate that the reduced effective dimensionality identified through global sensitivity analysis explains the performance advantages of one approach over another. Specifically, the increased smoothness provided by Chebyshev or conditional pathwise methods enhances the convergence rate of randomized Quasi Monte Carlo integration, leading to the significant increase of accuracy and reduced computational costs.
Curvature Estimates and the Positive Mass Theorem
Creators: name: Bray, Hubert
name: Finster, Felix
Publisher: name: arXiv
Year: 1999
Subjects: subject: Differential Geometry (math.DG)
subject: Mathematical Physics (math-ph)
subject: FOS: Mathematics
subject: FOS: Physical sciences

description: The Positive Mass Theorem implies that any smooth, complete, asymptotically flat 3-manifold with non-negative scalar curvature which has zero total mass is isometric to (R^3, delta_{ij}). In this paper, we quantify this statement using spinors and prove that if a complete, asymptotically flat manifold with non-negative scalar curvature has small mass and bounded isoperimetric constant, then the manifold must be close to (R^3,delta_{ij}), in the sense that there is an upper bound for the L^2 norm of the Riemannian curvature tensor over the manifold except for a set of small measure. This curvature estimate allows us to extend the case of equality of the Positive Mass Theorem to include non-smooth manifolds with generalized non-negative scalar curvature, which we define.
description: 12 pages, LaTeX (published version)
MOESM1 of Poison in paradise: increase of toxic effects in restored sections of two rivers jeopardizes the success of hydromorphological restoration measures
Creators: name: Brettschneider, Denise
name: Misovic, Andrea
name: Schulte-Oehlmann, Ulrike
name: Oetken, Matthias
name: Oehlmann, Jörg
Publisher: name: figshare
Year: 2019
Subjects: subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 1: Figure S1. Potamopyrgus antipodarum. Mean and standard deviation of the number of embryos (a, b) and mean and standard error of the mean of the percentage mortality (c, d) after 28 days of exposure in laboratory experiments with combined water/sediment samples of the river Horloff in March 2017 (a, c) and of the river Nidda in May 2017 (b, d). White: reference sites, with H3R and N2R as statistical reference sites, light grey: restoration sites, dark grey: transect sites. Significant differences in the number of embryos compared to the corresponding reference site H3R or N2R (shaded) were determined via Mann–Whitney test. *p
title: Crepis bocconii
title: Berg-Pippau (Crepis bocconii)
titleType: AlternativeTitle
Creators: name: Schulz, Herbert
Publisher: name: Universitätsbibliothek Braunschweig
Year: 2006
Subjects: subject: Crepis pontana
subject: Diasammlung Herbert Schulz
subject: 580

description: Enthält 5 Bilder des Berg-Pippaus.
Extracting Interpretable Physical Parameters from Spatiotemporal Systems using Unsupervised Learning
Creators: name: Lu, Peter Y.
name: Kim, Samuel
name: Soljačić, Marin
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computational Physics (physics.comp-ph)
subject: Machine Learning (cs.LG)
subject: Data Analysis, Statistics and Probability (physics.data-an)
subject: Machine Learning (stat.ML)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: Experimental data is often affected by uncontrolled variables that make analysis and interpretation difficult. For spatiotemporal systems, this problem is further exacerbated by their intricate dynamics. Modern machine learning methods are particularly well-suited for analyzing and modeling complex datasets, but to be effective in science, the result needs to be interpretable. We demonstrate an unsupervised learning technique for extracting interpretable physical parameters from noisy spatiotemporal data and for building a transferable model of the system. In particular, we implement a physics-informed architecture based on variational autoencoders that is designed for analyzing systems governed by partial differential equations (PDEs). The architecture is trained end-to-end and extracts latent parameters that parameterize the dynamics of a learned predictive model for the system. To test our method, we train our model on simulated data from a variety of PDEs with varying dynamical parameters that act as uncontrolled variables. Numerical experiments show that our method can accurately identify relevant parameters and extract them from raw and even noisy spatiotemporal data (tested with roughly 10% added noise). These extracted parameters correlate well (linearly with $R^2 > 0.95$) with the ground truth physical parameters used to generate the datasets. We then apply this method to nonlinear fiber propagation data, generated by an ab-initio simulation, to demonstrate its capabilities on a more realistic dataset. Our method for discovering interpretable latent parameters in spatiotemporal systems will allow us to better analyze and understand real-world phenomena and datasets, which often have unknown and uncontrolled variables that alter the system dynamics and cause varying behaviors that are difficult to disentangle.
description: 19 pages, 9 figures, 2 tables
Additional file 1 of Immunological sub-phenotypes and response to convalescent plasma in COVID-19 induced ARDS: a secondary analysis of the CONFIDENT trial
Creators: name: Misset, Benoît
name: Diep, Anh Nguyet
name: Bertrand, Axelle
name: Piagnerelli, Michael
name: Hoste, Eric
name: Michaux, Isabelle
name: De Waele, Elisabeth
name: Dumoulin, Alexander
name: Jorens, Philippe G.
name: van der Hauwaert, Emmanuel
name: Vallot, Frédéric
name: Swinnen, Walter
name: De Schryver, Nicolas
name: de Mey, Nathalie
name: Layios, Nathalie
name: Mesland, Jean-Baptiste
name: Robinet, Sébastien
name: Cavalier, Etienne
name: Donneau, Anne-Françoise
name: Moutschen, Michel
name: Laterre, Pierre-François
Publisher: name: figshare
Year: 2024
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Physiology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1.
Separation of Variables in the Elliptic Gaudin Model
Creators: name: Sklyanin, Evgueni K.
name: Takebe, Takashi
Publisher: name: arXiv
Year: 1998
Subjects: subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: High Energy Physics - Theory (hep-th)
subject: Quantum Algebra (math.QA)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: For the elliptic Gaudin model (a degenerate case of XYZ integrable spin chain) a separation of variables is constructed in the classical case. The corresponding separated coordinates are obtained as the poles of a suitably normalized Baker-Akhiezer function. The classical results are generalized to the quantum case where the kernel of separating integral operator is constructed. The simplest one-degree-of-freedom case is studied in detail.
description: 24 pages, Latex; minor corrections
title: Crepis alpestris
title: Alpen-Pippau (Crepis alpestris)
titleType: AlternativeTitle
Creators: name: Schulz, Herbert
Publisher: name: Universitätsbibliothek Braunschweig
Year: 2006
Subjects: subject: Diasammlung Herbert Schulz
subject: 580

description: Enthält 7 Bilder des Alpen-Pippaus.
title: Crepis mollis
title: Weichhaariger Pippau (Crepis mollis)
titleType: AlternativeTitle
Creators: name: Schulz, Herbert
Publisher: name: Universitätsbibliothek Braunschweig
Year: 2006
Subjects: subject: Diasammlung Herbert Schulz
subject: 580

description: Enthält 1 Bild des Weichhaarigen Pippaus.
title: Crepis paludosa
title: Sumpf-Pippau (Crepis paludosa)
titleType: AlternativeTitle
Creators: name: Schulz, Herbert
Publisher: name: Universitätsbibliothek Braunschweig
Year: 2006
Subjects: subject: Diasammlung Herbert Schulz
subject: 580

description: Enthält 5 Bilder des Sumpf-Pippaus.
Artificial Intelligence and Deep Learning Algorithms for Epigenetic Sequence Analysis: A Review for Epigeneticists and AI Experts
Creators: name: Tahir, Muhammad
name: Norouzi, Mahboobeh
name: Khan, Shehroz S.
name: Davie, James R.
name: Yamanaka, Soichiro
name: Ashraf, Ahmed
Publisher: name: arXiv
Year: 2025
Subjects: subject: Genomics (q-bio.GN)
subject: Artificial Intelligence (cs.AI)
subject: Machine Learning (cs.LG)
subject: FOS: Biological sciences
subject: FOS: Computer and information sciences

description: Epigenetics encompasses mechanisms that can alter the expression of genes without changing the underlying genetic sequence. The epigenetic regulation of gene expression is initiated and sustained by several mechanisms such as DNA methylation, histone modifications, chromatin conformation, and non-coding RNA. The changes in gene regulation and expression can manifest in the form of various diseases and disorders such as cancer and congenital deformities. Over the last few decades, high throughput experimental approaches have been used to identify and understand epigenetic changes, but these laboratory experimental approaches and biochemical processes are time-consuming and expensive. To overcome these challenges, machine learning and artificial intelligence (AI) approaches have been extensively used for mapping epigenetic modifications to their phenotypic manifestations. In this paper we provide a narrative review of published research on AI models trained on epigenomic data to address a variety of problems such as prediction of disease markers, gene expression, enhancer promoter interaction, and chromatin states. The purpose of this review is twofold as it is addressed to both AI experts and epigeneticists. For AI researchers, we provided a taxonomy of epigenetics research problems that can benefit from an AI-based approach. For epigeneticists, given each of the above problems we provide a list of candidate AI solutions in the literature. We have also identified several gaps in the literature, research challenges, and recommendations to address these challenges.
title: Crepis praemorsa
title: Abgebissener Pippau (Crepis praemorsa)
titleType: AlternativeTitle
Creators: name: Schulz, Herbert
Publisher: name: Universitätsbibliothek Braunschweig
Year: 2006
Subjects: subject: Diasammlung Herbert Schulz
subject: 580

description: Enthält 8 Bilder des Abgebissenen Pippaus.
Essays on Corporate Cash holdings and Business Groups
Creators: Kim, Yun Kyung
Publisher: name: Columbia University
Year: 2013
Subjects: Economics

description: This dissertation studies corporate cash holdings in Korea, with its own business groups("chaebols"), and the impact of Asian financial crisis in 1997-1998. The first essay examines the effects of cash on performance from 1994 to 2006. It first shows that cash-rich firms are more likely to survive and the exit rate of chaebol firms with large cash holdings during the crisis is much smaller. Moreover, large cash holdings in non-chaebol firms increase profitability compared to industry rivals after the crisis when external capital becomes more costly. Efficiently allocated internal cash holdings in chaebols, rather than affiliates' own cash, are related to better performance in pre-crisis period. My results suggest that business group affiliation is a key to explain the effect of cash on market performance, and that the precautionary motive plays a central role. The second essay studies the determinants of cash in Korean listed firms from 1993 to 2006. I find that the amount of cash in business groups is significantly smaller than that in stand-alones. Chaebol firms with financial subsidiaries, which can provide alternative financial resources, can reduce cash holdings. I also find that diversification contributes to lower the level of cash in chaebols. Both sources became more important after the crisis.The results also suggest that the smaller amount of cash in business groups is driven by a smaller need for precautionary cash.
Logarithmic perturbation theory for quasinormal modes
Creators: name: Leung, P. T.
name: Liu, Y. T.
name: Suen, W. M.
name: Tam, C. Y.
name: Young, K.
Publisher: name: arXiv
Year: 1997
Subjects: subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: Logarithmic perturbation theory (LPT) is developed and applied to quasinormal modes (QNMs) in open systems. QNMs often do not form a complete set, so LPT is especially convenient because summation over a complete set of unperturbed states is not required. Attention is paid to potentials with exponential tails, and the example of a Poschl-Teller potential is briefly discussed. A numerical method is developed that handles the exponentially large wavefunctions which appear in dealing with QNMs.
description: 24 pages, 4 Postscript figures, uses ioplppt.sty and epsfig.sty
title: Detection of Cis-Trans Conformation in Protein Structure using Deep Learning Neural Network Techniques
Creators: name: Singh, Jaswinder
Publisher: name: Griffith University
Year: 2019
Subjects: subject: Protein structure
subject: Deep learning
subject: Neutral network techniques
subject: Amino acid residues
subject: Cis-Trans conformation

description: Proteins are important biological macromolecules that play critical roles in most biological processes. The functionality of protein depends on its three dimensional structure, which further depends on the protein's amino acid sequence. Direct prediction of 3D structure of protein from amino acid is challenging task. Therefore, prediction of three dimensional protein structure is divided into small sub-problems like one and two-dimensional properties of protein structure. The solution of these sub-problems can lead to successful three-dimensional structure prediction of protein. Accurate prediction of Cis - Trans conformation in amino acid residues is one such sub-problem of protein structure prediction. It has been long established that cis conformations of amino acid residues play many biologically important roles and are implicated in cancer and neurodegenerative diseases, despite their exceptionally rare occurrence in protein structure (99.6% in trans). Due to this rarity, few methods have been developed for predicting cis-isomers from protein sequences, most of which are based on outdated datasets and lack the means for independent testing. This report presents several machine learning algorithm for the prediction of Cis - Trans conformation of amino acid residues. In this research work, using a database of more than 10000 high-resolution protein structures, we update the statistics of cis-isomers available in literature and develop a sequence-based prediction technique using an ensemble of residual convolutional and Long Short-Term Memory bidirectional recurrent neural networks which allows for learning from the whole protein sequence. We show that ensembling 8 neural network models yields the maximum MCC value of approximately 0.35 for cis-Pro-isomers, and 0.1 for cis-nonPro residues. The method should be useful to prioritize functionally important residues in cis-isomers for experimental validations and improve sampling of rare protein conformations for ab initio protein structure prediction.
title: Crepis setosa
title: Borsten-Pippau (Crepis setosa)
titleType: AlternativeTitle
Creators: name: Schulz, Herbert
Publisher: name: Universitätsbibliothek Braunschweig
Year: 2006
Subjects: subject: Diasammlung Herbert Schulz
subject: 580

description: Enthält 2 Bilder des Borsten-Pippaus.
Scattering studies with low-energy kaon-proton femtoscopy in proton-proton collisions at the LHC
Creators: name: ALICE Collaboration
Publisher: name: arXiv
Year: 2019
Subjects: subject: Nuclear Experiment (nucl-ex)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: The study of the strength and behaviour of the antikaon-nucleon ($\mathrm{\overline{K}N}$) interaction constitutes one of the key focuses of the strangeness sector in low-energy Quantum Chromodynamics (QCD). In this letter a unique high-precision measurement of the strong interaction between kaons and protons, close and above the kinematic threshold, is presented. The femtoscopic measurements of the correlation function at low pair-frame relative momentum of (K$^+$ p $\oplus$ K$^-$ $\overline{\mathrm{p}}$) and (K$^-$ p $\oplus$ K$^+$ $\overline{\mathrm{p}}$) pairs measured in pp collisions at $\sqrt{s}$ = 5, 7 and 13 TeV are reported. A structure observed around a relative momentum of 58 MeV/$c$ in the measured correlation function of (K$^-$ p $\oplus$ K$^+$ $\overline{\mathrm{p}}$) with a significance of 4.4. $σ$ constitutes the first experimental evidence for the opening of the $(\mathrm{\overline{K}^0 n} \oplus \mathrm{K^0 \overline{n}})$ isospin breaking channel due to the mass difference between charged and neutral kaons. The measured correlation functions have been compared to Jülich and Kyoto models in addition to the Coulomb potential. The high-precision data at low relative momenta presented in this work prove femtoscopy to be a powerful complementary tool to scattering experiments and provide new constraints above the $\mathrm{\overline{K}N}$ threshold for low-energy QCD chiral models.
description: 16 pages, 2 captioned figures, authors from page 11, published version, figures at http://alice-publications.web.cern.ch/node/5322
A Compositional Framework for Scientific Model Augmentation
Creators: name: Halter, Micah
name: Herlihy, Christine
name: Fairbanks, James
Publisher: name: arXiv
Year: 2019
Subjects: subject: Programming Languages (cs.PL)
subject: Software Engineering (cs.SE)
subject: Category Theory (math.CT)
subject: FOS: Computer and information sciences
subject: FOS: Mathematics

description: Scientists construct and analyze computational models to understand the world. That understanding comes from efforts to augment, combine, and compare models of related phenomena. We propose SemanticModels.jl, a system that leverages techniques from static and dynamic program analysis to process executable versions of scientific models to perform such metamodeling tasks. By framing these metamodeling tasks as metaprogramming problems, SemanticModels.jl enables writing programs that generate and expand models. To this end, we present a category theory-based framework for defining metamodeling tasks, and extracting semantic information from model implementations, and show how this framework can be used to enhance scientific workflows in a working case study.
description: In Proceedings ACT 2019, arXiv:2009.06334
title: Petasites hybridus
title: Gewöhnliche Pestwurz (Petasites hybridus)
titleType: AlternativeTitle
Creators: name: Schulz, Herbert
Publisher: name: Universitätsbibliothek Braunschweig
Year: 2006
Subjects: subject: Diasammlung Herbert Schulz
subject: 580

description: Enthält 11 Bilder der Gewöhnlichen Pestwurz.
Additional file 1: of Soluble epoxide hydrolase modulates immune responses in activated astrocytes involving regulation of STAT3 activity
Creators: name: Hung, Chia-Chi
name: Yi-Hsuan Lee
name: Kuo, Yi-Min
name: Pei-Chien Hsu
name: Huey-Jen Tsay
name: Ying-Ting Hsu
name: Chih-Chin Lee
name: Liang, Jia-Jun
name: Feng-Shiun Shie
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology

description: Figure S1. The expression levels of sEH by genetic manipulations in astrocytes. The expression levels of sEH in primary astrocytes derived from Wt mice were genetically manipulated by using commercially available reagents for the RNA silencing of sEH (si-sEH) and the overexpression of sEH (over-sEH). The levels of sEH mRNA in si-sEH and over-sEH astrocytes were 28 ± 3% (n = 9) and 5.8 ± 1.2 × 106% (n = 6) of the control, respectively, as measured by qPCR (Additional file 1: Figure S1A, B). The mRNA levels of sEH in non-transfected primary astrocytes appeared to be downregulated by LPS treatments (38 ± 5% of the control, n = 7, p
title: Crepis tectorum
title: Dach-Pippau (Crepis tectorum)
titleType: AlternativeTitle
Creators: name: Schulz, Herbert
Publisher: name: Universitätsbibliothek Braunschweig
Year: 2006
Subjects: subject: Diasammlung Herbert Schulz
subject: 580

description: Enthält 10 Bilder des Dach-Pippaus.
Additional file 1 of Carotid intima-media thickness, fibroblast growth factor 23, and mineral bone disorder in children with chronic kidney disease
Creators: name: Palupi-Baroto, Retno
name: Hermawan, Kristia
name: Murni, Indah Kartika
name: Nurlita, Tiara
name: Prihastuti, Yuli
name: Puspitawati, Ira
name: Tandri, Chika Carnation
name: Ambarsari, Cahyani Gita
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology

description: Supplementary Material 1
Viscous Instanton for Burgers' Turbulence
Creators: name: Balkovsky, E.
name: Falkovich, G.
name: Kolokolov, I.
name: Lebedev, V.
Publisher: name: arXiv
Year: 1996
Subjects: subject: Chaotic Dynamics (nlin.CD)
subject: Condensed Matter (cond-mat)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We consider the tails of probability density functions (PDF) for different characteristics of velocity that satisfies Burgers equation driven by a large-scale force. The saddle-point approximation is employed in the path integral so that the calculation of the PDF tails boils down to finding the special field-force configuration (instanton) that realizes the extremum of probability. We calculate high moments of the velocity gradient $\partial_xu$ and find out that they correspond to the PDF with $\ln[{\cal P}(\partial_xu)]\propto-(-\partial_xu/{\rm Re})^{3/2}$ where ${\rm Re}$ is the Reynolds number. That stretched exponential form is valid for negative $\partial_xu$ with the modulus much larger than its root-mean-square (rms) value. The respective tail of PDF for negative velocity differences $w$ is steeper than Gaussian, $\ln{\cal P}(w)\sim-(w/u_{\rm rms})^3$, as well as single-point velocity PDF $\ln{\cal P}(u)\sim-(|u|/u_{\rm rms})^3$. For high velocity derivatives $u^{(k)}=\partial_x^ku$, the general formula is found: $\ln{\cal P}(|u^{(k)}|)\propto -(|u^{(k)}|/{\rm Re}^k)^{3/(k+1)}$.
description: 15 pages, RevTeX 3.0
Polypheretima everetti Beddard and Fedarb 1895
Creators: name: Aspe, Nonillon M.
name: Manasan, Rafael Ethan
name: Manlavi, Albert B.
name: Patiluna, Ma. Lotus E.
name: Sebido, Maria Asela B.
name: Obusan, Marie Christine M.
name: Simbahan, Jessica F.
name: James, Samuel W.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Clitellata
Crassiclitellata
Megascolecidae
Polypheretima
Polypheretima everetti

description: Polypheretima everetti Beddard and Fedarb, 1895
 Diagnosis
Large worm with adult body length up to 300 mm, diameter up to 12 mm; with up to 260 segments. Live worm reddish purple. Spermathecal batteries in 5/6/7. Setae numerous (up to 130 per segment). Male openings 0.25 circumference apart ventrally, 16 setae between male pores. Genital markings paired, presetal in line with male pores in some or all of xix–xxi, xxii, xxiii. Each spermathecal battery in vi and vii usually with 6–12 spermathecae. Male system holandric.
 Remarks
 Polypheretima everetti belongs to the Po. elongata Perrier, 1872 species group of Easton (1979), characterised by having a pair of genital markings on xix, successive segments in line with the male pores, paired batteries of up to 28 spermathecae in vi and/or vii, and shallow copulatory bursae with no stalked glands. The type locality of Po. everetti is Balabac Island, Palawan, Philippines. This species is also distributed in Sulawesi and Lombok, Indonesia, and in Borneo including Mt Kinabalu (Blakemore et al. 2007).
description: Published as part of Aspe, Nonillon M., Manasan, Rafael Ethan, Manlavi, Albert B., Patiluna, Ma. Lotus E., Sebido, Maria Asela B., Obusan, Marie Christine M., Simbahan, Jessica F. & James, Samuel W., 2021, The earthworm fauna of Palawan, Philippines with description of nineteen new pheretimoid species (Clitellata: Megascolecidae), pp. 733-797 in Journal of Natural History 55 (11 - 12) on page 759, DOI: 10.1080/00222933.2021.1923849, http://zenodo.org/record/5463798
Additional file 2 of Disruption of Plasmodium falciparum histidine-rich protein 2 may affect haem metabolism in the blood stage
Creators: name: Yang, Yingchao
name: Tang, Tongke
name: Feng, Bo
name: Li, Shanshan
name: Hou, Nan
name: Ma, Xiao
name: Jiang, Lubin
name: Xin, Xiaofang
name: Chen, Qijun
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2: Table S1. Primer sequences used for sgRNA synthesis.
title: Hieracium intybaceum
title: Endivien-Habichtskraut (Hieracium intybaceum)
titleType: AlternativeTitle
Creators: name: Schulz, Herbert
Publisher: name: Universitätsbibliothek Braunschweig
Year: 2006
Subjects: subject: Weißliches Habichtskraut
subject: Diasammlung Herbert Schulz
subject: 580

description: Enthält 11 Bilder des Endivien-Habichtskrauts.
Multimodal Subspace Support Vector Data Description
Creators: name: Sohrab, Fahad
name: Raitoharju, Jenni
name: Iosifidis, Alexandros
name: Gabbouj, Moncef
Publisher: name: arXiv
Year: 2019
Subjects: subject: Machine Learning (cs.LG)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: In this paper, we propose a novel method for projecting data from multiple modalities to a new subspace optimized for one-class classification. The proposed method iteratively transforms the data from the original feature space of each modality to a new common feature space along with finding a joint compact description of data coming from all the modalities. For data in each modality, we define a separate transformation to map the data from the corresponding feature space to the new optimized subspace by exploiting the available information from the class of interest only. We also propose different regularization strategies for the proposed method and provide both linear and non-linear formulations. The proposed Multimodal Subspace Support Vector Data Description outperforms all the competing methods using data from a single modality or fusing data from all modalities in four out of five datasets.
description: 26 pages manuscript (6 tables, 2 figures), 24 pages supplementary material (27 tables, 10 figures). The manuscript and supplementary material are combined as a single .pdf (50 pages) file
HERMES 2021.1 - SCRIPT
Creators: name: Schaffer, Andreas
name: Ludovique, Camila
name: Kishimoto, Paul
Publisher: name: Zenodo
Year: 2021
Subjects: multinomial logist model
transportation demand
travel time budget

description: These scripts use R language to model consumer travel behaviour. The codes allow estimating passenger demand and share across models. Each region has its own script. For the pathway "Domestic aviation in a post-pandemic world" there are two scripts available. The main distinction is the rationality embedded in the variable 'VOT'.
title: Petasites paradoxus
title: Alpen-Pestwurz (Petasites paradoxus)
titleType: AlternativeTitle
Creators: name: Schulz, Herbert
Publisher: name: Universitätsbibliothek Braunschweig
Year: 2006
Subjects: subject: Diasammlung Herbert Schulz
subject: 580

description: Enthält 2 Bilder des Alpen-Pestwurzes.
N=4 Superconformal Mechanics and the Potential Structure of AdS Spaces
Creators: name: Donets, E. E.
name: Pashnev, A.
name: Rivelles, V. O.
name: Sorokin, D.
name: Tsulaia, M.
Publisher: name: arXiv
Year: 2000
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Differential Geometry (math.DG)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: The dynamics of an N=4 spinning particle in a curved background is described using the N=4 superfield formalism. The $SU(2)_{local}\times SU(2)_{global}$ N=4 superconformal symmetry of the particle action requires the background to be a real "Kähler-like" manifold whose metric is generated by a sigma-model superpotential. The anti-de-Sitter spaces are shown to belong to this class of manifolds.
description: LaTeX, 12 pages
Additional file 2 of “I have learned that nothing is given for free”: an exploratory qualitative evaluation of a social norms edutainment intervention broadcast on local radio to prevent age-disparate transactional sex in Kigoma, Tanzania
Creators: name: Howard-Merrill, Lottie
name: Pichon, Marjorie
name: Witt, Alice
name: Sono, Revocatus
name: Gimunta, Veronicah
name: Hofer, Enrica
name: Kiluvia, Fatina
name: Alfred, Mengi
name: Yohanna, Emmanuel
name: Buller, Ana Maria
Publisher: name: figshare
Year: 2024
Subjects: subject: Sociology
subject: FOS: Sociology

description: Supplementary Material 2
COMPUTATIONAL CHARACTERIZATION OF 13C NMR LINESHAPES OF CARBON DIOXIDE IN STRUCTURE I CLATHRATE HYDRATES
Creators: name: Woo, Tom K.
name: Dornan, Peter
name: Alavi, Saman
Publisher: name: The University of British Columbia
Year: 2008

description: Nonspherical large cages in structure I (sI) clathrates impose non-uniform motion of nonspherical guest molecules and anisotropic lineshapes in NMR spectra of the guest. In this work, we calculate the lineshape anisotropy of the linear CO2 molecule in large sI clathrate cages based on molecular dynamics simulations of this inclusion compound. The methodology is general and does not depend on the temperature and type of inclusion compound or guest species studied. The nonspherical shape of the sI clathrate hydrate large cages leads to preferential alignment of linear CO2 molecules in directions parallel to the two hexagonal faces of the cages. The angular distribution of the CO2 guests in terms of a polar angle θ and azimuth angle  and small amplitude vibrational motions in the large cage are characterized by molecular dynamics simulations at different temperatures in the stability range of the CO2 sI clathrate. These distributions are used to calculate the NMR powder spectrum of CO2 at different temperatures. The experimental 13C NMR lineshapes of CO2 guests in the large cages show a reversal of the skew between the low temperature (77 K) and the high temperature (238 K) limits of the stability of the clathrate. Good agreement between experimental lineshapes and calculated lineshapes is obtained. No assumptions regarding the nature of the guest motions in the cages are required.
MOESM2 of The extracellular endo-Î˛-1,4-xylanase with multidomain from the extreme thermophile Caldicellulosiruptor lactoaceticus is specific for insoluble xylan degradation
Creators: name: Xiaojing Jia
name: Yejun Han
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2: Table S1. CD spectra for C. lactoaceticus Xyn10B truncated variants.
Supplemental Tables - Copeptin in young adults born preterm
Creators: name: Flahault, Adrien
Publisher: name: figshare
Year: 2021
Subjects: subject: 110312 Nephrology and Urology
subject: FOS: Clinical medicine

description: Supplemental tables for manuscript : Plasma copeptin as a novel marker of glomerular hyperfiltration in young adults born preterm
title: Petasites albus
title: Weiße Pestwurz (Petasites albus)
titleType: AlternativeTitle
Creators: name: Schulz, Herbert
Publisher: name: Universitätsbibliothek Braunschweig
Year: 2006
Subjects: subject: Diasammlung Herbert Schulz
subject: 580

description: Enthält 8 Bilder des Weißen Pestwurzes.
title: Legitimitäts- statt Governancetransfer?
title: Regionale Organisationen autoritärer Regime am Beispiel der Shanghaier Organisationen für Zusammenarbeit in Zentralasien
titleType: Subtitle
Creators: name: Schneider, Sebastian
Publisher: name: Freie Universität Berlin
Year: 2013
Subjects: subject: 300 Sozialwissenschaften::320 Politikwissenschaft

description: Die Europäische Union (EU) dient Teilen der Regionalismus- und Integrationsfor-schung immer noch als wichtiges Idealbild. Die zunehmende Integration ihrer Mit-gliedsstaaten und die demokratische Agenda der Europäischen Union haben den Blick auch auf andere Regionalorganisationen geprägt. Dieser Beitrag untersucht die zent-ralasiatische Regionalorganisation Shanghaier Organisation für Zusammenarbeit (SCO). Einerseits gibt es bisher nur wenige empirische Untersuchungen zu dieser Re-gion und dieser Organisation. Andererseits ist die SCO ein intergouvernementaler Zu- sammenschluss autoritärer Regime und entspricht damit nicht dem oben genannten Idealbild. Der Beitrag zeigt, wie die Mitgliedsstaaten der SCO diese Regionalorganisa-tion nutzen, um ihr Handeln und ihre Regime nach innen und nach außen zu legitimie-ren. Durch dieses Vorgehen schaffen es die Mitglieder der SCO, eine Gegenöffentlich-keit zur westlich geprägten Internationalen Gemeinschaft aufzubauen und ihre eigenen Regime zu stabilisieren.
Additional file 4 of “I have learned that nothing is given for free”: an exploratory qualitative evaluation of a social norms edutainment intervention broadcast on local radio to prevent age-disparate transactional sex in Kigoma, Tanzania
Creators: name: Howard-Merrill, Lottie
name: Pichon, Marjorie
name: Witt, Alice
name: Sono, Revocatus
name: Gimunta, Veronicah
name: Hofer, Enrica
name: Kiluvia, Fatina
name: Alfred, Mengi
name: Yohanna, Emmanuel
name: Buller, Ana Maria
Publisher: name: figshare
Year: 2024
Subjects: subject: Sociology
subject: FOS: Sociology

description: Supplementary Material 4
Additional file 1 of Disruption of Plasmodium falciparum histidine-rich protein 2 may affect haem metabolism in the blood stage
Creators: name: Yang, Yingchao
name: Tang, Tongke
name: Feng, Bo
name: Li, Shanshan
name: Hou, Nan
name: Ma, Xiao
name: Jiang, Lubin
name: Xin, Xiaofang
name: Chen, Qijun
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Figure S1. HRPII gene and gene disruption schematic.
A phylogenomic analysis of Marek's disease virus reveals independent paths to virulence in Eurasia and North America
Creators: name: Trimpert, Jakob
name: Groenke, Nicole
name: Jenckel, Maria
name: He, Shulin
name: Kunec, Dusan
name: Szpara, Moriah L.
name: Spatz, Stephen J.
name: Osterrieder, Nikolaus
name: McMahon, Dino P.
Publisher: name: Freie Universität Berlin
Year: 2017
Subjects: subject: 500 Naturwissenschaften und Mathematik::570 Biowissenschaften; Biologie

description: Virulence determines the impact a pathogen has on the fitness of its host, yet current understanding of the evolutionary origins and causes of virulence of many pathogens is surprisingly incomplete. Here, we explore the evolution of Marek's disease virus (MDV), a herpesvirus commonly afflicting chickens and rarely other avian species. The history of MDV in the 20th century represents an important case study in the evolution of virulence. The severity of MDV infection in chickens has been rising steadily since the adoption of intensive farming techniques and vaccination programs in the 1950s and 1970s, respectively. It has remained uncertain, however, which of these factors is causally more responsible for the observed increase in virulence of circulating viruses. We conducted a phylogenomic study to understand the evolution of MDV in the context of dramatic changes to poultry farming and disease control. Our analysis reveals evidence of geographical structuring of MDV strains, with reconstructions supporting the emergence of virulent viruses independently in North America and Eurasia. Of note, the emergence of virulent viruses appears to coincide approximately with the introduction of comprehensive vaccination on both continents. The time-dated phylogeny also indicated that MDV has a mean evolutionary rate of ~1.6 × 10−5 substitutions per site per year. An examination of gene-linked mutations did not identify a strong association between mutational variation and virulence phenotypes, indicating that MDV may evolve readily and rapidly under strong selective pressures and that multiple genotypic pathways may underlie virulence adaptation in MDV.
Amynthas Kinberg 1867
Creators: name: Aspe, Nonillon M.
name: Manasan, Rafael Ethan
name: Manlavi, Albert B.
name: Patiluna, Ma. Lotus E.
name: Sebido, Maria Asela B.
name: Obusan, Marie Christine M.
name: Simbahan, Jessica F.
name: James, Samuel W.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Clitellata
Opisthopora
Megascolecidae
Amynthas

description: Genus Amynthas Kinberg 1867
 Type species
 Amynthas aeruginosus, Kinberg 1867.
 Generic diagnosis
Body circular in cross section, with numerous setae regularly arranged equatorially around each segment; setae absent on first and last segments. Male pores paired and superficial, opening on xviii. Spermathecal pores small or large, usually paired (bithecate) but occasionally numerous (polythecate) or single (monothecate). Spermathecal pores positioned either intersegmentally or intrasegmentally between 4/5 and 8/9. Clitellum annular, covering three segments from xiv to xvi. Single female pore midventrally on xiv. Genital markings present or absent. If genital markings present, variable in number and forming complex pattern on segments near male pores. Oesophageal gizzard usually originating in viii; oesophageal bursae lacking; pair of caeca originating in xxvii, extending forward. Ovaries and funnels free in xiii. Male sexual system holandric, metandric or proandric. Spermathecae a single pair or multiple pairs, sometimes single and located midventrally, or sometimes lacking. Nephridia on spermathecal duct lacking. One pair of prostate glands, racemose. Copulatory bursae lacking.
description: Published as part of Aspe, Nonillon M., Manasan, Rafael Ethan, Manlavi, Albert B., Patiluna, Ma. Lotus E., Sebido, Maria Asela B., Obusan, Marie Christine M., Simbahan, Jessica F. & James, Samuel W., 2021, The earthworm fauna of Palawan, Philippines with description of nineteen new pheretimoid species (Clitellata: Megascolecidae), pp. 733-797 in Journal of Natural History 55 (11 - 12) on page 777, DOI: 10.1080/00222933.2021.1923849, http://zenodo.org/record/5463798
Brain Network Classification Based on Graph Contrastive Learning and Graph Transformer
Creators: name: Zhu, ZhiTeng
name: Yao, Lan
Publisher: name: arXiv
Year: 2025
Subjects: subject: Machine Learning (cs.LG)
subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: The dynamic characterization of functional brain networks is of great significance for elucidating the mechanisms of human brain function. Although graph neural networks have achieved remarkable progress in functional network analysis, challenges such as data scarcity and insufficient supervision persist. To address the limitations of limited training data and inadequate supervision, this paper proposes a novel model named PHGCL-DDGformer that integrates graph contrastive learning with graph transformers, effectively enhancing the representation learning capability for brain network classification tasks. To overcome the constraints of existing graph contrastive learning methods in brain network feature extraction, an adaptive graph augmentation strategy combining attribute masking and edge perturbation is implemented for data enhancement. Subsequently, a dual-domain graph transformer (DDGformer) module is constructed to integrate local and global information, where graph convolutional networks aggregate neighborhood features to capture local patterns while attention mechanisms extract global dependencies. Finally, a graph contrastive learning framework is established to maximize the consistency between positive and negative pairs, thereby obtaining high-quality graph representations. Experimental results on real-world datasets demonstrate that the PHGCL-DDGformer model outperforms existing state-of-the-art approaches in brain network classification tasks.
description: 10 pages, 5 figures, uses tikz.sty
MOESM1 of The extracellular endo-Î˛-1,4-xylanase with multidomain from the extreme thermophile Caldicellulosiruptor lactoaceticus is specific for insoluble xylan degradation
Creators: name: Xiaojing Jia
name: Yejun Han
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Fig. S1. Multiple amino acid sequence alignment of the GH10 catalytic domain of C. lactoaceticus Xyn10B and other GH10 xylanases. Fig. S2. SDS-PAGE analysis of C. lactoaceticus Xyn10B truncated variants.
title: Building the Capacity of Commencing Students to Manage Their Transition to University: An Intervention Utilizing Students as Opinion Leaders
Creators: name: Ryan, Claire Margaret
Publisher: name: Griffith University
Year: 2014
Subjects: subject: Opinion leaders
subject: Social networks
subject: Transition to university
subject: Commencing university students

description: Opinion leaders (OPLs) are defined as key individuals who are able to influence the attitudes and actions of members of their social network (Rogers, 2003). This research takes an innovative approach to studying the transition to university, drawing from a social contagion model to create an empowerment based intervention where ‘opinion leaders’ influence their peers to build the academic, social, and psychological capital of their cohort. Opinion leaders were prospectively identified in a new cohort of first year students, received training in how to utilise their social influence, and their behaviours and outcomes documented. A series of studies were used to evaluate the intervention. The thesis begins by reviewing the context and central constructs (Chapter 2) and then develops the design of the intervention (Chapter 3). Existing opinion leader literature speculates as to what are the best ways to train opinion leaders, and a unique contribution is offered here by summarising and integrating the most effective training approaches to partnering with opinion leaders. This development work also offers an application of empowerment theory to effective adult learning facilitation. The concept of ‘supportive leadership’, (i.e., the vehicle for opinion leaders to enact their role, is developed into a teachable framework and the design of a short 3-hour group workshop using an experiential learning approach) is presented. The workshop’s goals were to teach opinion leaders mechanisms for utilizing their social influence to mobilise the psychological, academic and social resources of their peers, and encourage proactive engagement with university. In addition, the workshop aimed to increase leaders’ senses of success (Lizzio, 2006) and increase their subjective sense of psychological capital.
Deformations of Special Lagrangian Submanifolds
Creators: name: Salur, Sema
Publisher: name: arXiv
Year: 1999
Subjects: subject: Differential Geometry (math.DG)
subject: Symplectic Geometry (math.SG)
subject: FOS: Mathematics

description: R.C.McLean showed that the moduli space of nearby submanifolds of a smooth, compact, orientable special Lagrangian submanifold L in a Calabi-Yau manifold X is a smooth manifold and its tangent space at L is identified with the space of harmonic one forms on L. In this paper, we will extend this result from Calabi-Yau manifolds to the symplectic manifolds with non-integrable almost complex structure.
description: published version
Additional file 1 of Physical (in)activity and screen-based media use of adolescents with juvenile idiopathic arthritis over time - data from a German inception cohort
Creators: name: Milatz, Florian
name: Pedersen, Malthe Jessen
name: Klotsche, Jens
name: Liedmann, Ina
name: Niewerth, Martina
name: Hospach, Anton
name: Horneff, Gerd
name: Klein, Ariane
name: Weller-Heinemann, Frank
name: Foeldvari, Ivan
name: Kallinich, Tilmann
name: Haas, Johannes-Peter
name: Windschall, Daniel
name: Dressler, Frank
name: Foell, Dirk
name: Kuemmerle-Deschner, Jasmin B.
name: Minden, Kirsten
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Science Policy
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified

description: Supplementary Material 1
MOESM1 of Esterification of geraniol as a strategy for increasing product titre and specificity in engineered Escherichia coli
Creators: name: Chacรณn, Micaela
name: Marriott, Alice
name: Kendrick, Emanuele
name: Styles, Matthew
name: Leak, David
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Computational Biology

description: Additional file 1. Additional methods, figures and tables.
A Model of Interacting Partons for Hadronic Structure Functions
Creators: name: Krishnaswami, G. S.
name: Rajeev, S. G.
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: We present a model for the structure of baryons in which the valence partons interact through a linear potential. This model can be derived from QCD in the approximation where the transverse momenta are ignored. We compare the parton structure function predicted by our model with a standard global fit to Deep Inelastic Scattering data. The only parameter we can adjust is the fraction of the baryon momentum carried by the valence partons. Our prediction agrees well with data except for small values of the Bjorken scaling variable.
description: Latex2e, 18 pages 2 figs