cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
D5.2 - 1st substance-group specific derivation of EU-wide health-based guidance values
Creators: name: Apel, Petra
name: Ougier, Eva
Publisher: name: Zenodo
Year: 2017

description: In task 5.2 of HBM4EU, HBM health-based guidance values (HBM HBGVs) are derived for HBM4EU priority substances. The methodology applied to derive these values is based on the procedure described in the German Human Biomonitoring Commission’s position papers, as well as on the guidance document elaborated by the French Agency for Food, Environmental and Occupational Health and Safety (ANSES) for the derivation of biological limit values for chemicals used in the workplace. These methodological approaches have been summarised and combined in a concept document previously released in the HBM4EU task 5.2 workframe (HBM4EU concept paper, 2017). CHAPTER 1: In the current report, a general population HBM HBGV (HBM HBGVGenPop) and an occupational HBM HBGV (HBM HBGVWorker) are derived for di(2-ethylhexyl) phthalate (DEHP) and discussed. CHAPTER 2: In the current report, general population HBGVs (HBGVsGenPop) are derived for the sum of the DINCH metabolites cyclohexane-1,2-dicarboxylic acid mono-hydroxyisononyl ester (OH-MINCH), and cyclohexane-1,2-dicarboxylic acid mono-carboxyisooctyl ester (cx-MINCH) in the urine of adults and children. Derivation of an HBGV for workers (HBGVWorker) is not presented in this current report. To our knowledge, studies exploring the internal concentration of DINCH in workers via biomonitoring measurements are not published at this time. However, efforts will be made during the course of the HBM4EU project to derive a specific value for workers, starting from an animal study compatible with an occupational scenario of exposure, as indicated in the HBM4EU concept paper.
Mesagrionidae Bybee & Kalkman & Erickson & Frandsen & Breinholt & Suvorov & Dijkstra & Cordero-Rivera & Skevington & Abbott & Herrera & Lemmon & Lemmon & Ware 2021
Creators: name: Bybee, Seth M.
name: Kalkman, Vincent J.
name: Erickson, Robert J.
name: Frandsen, Paul B.
name: Breinholt, Jesse W.
name: Suvorov, Anton
name: Dijkstra, Klaas-Douwe B.
name: Cordero-Rivera, Adolfo
name: Skevington, Jeffrey H.
name: Abbott, John C.
name: Herrera, Melissa Sanchez
name: Lemmon, Alan R.
name: Lemmon, Emily Moriarty
name: Ware, Jessica L.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Mesagrionidae

description: Mesagrionidae Kalkman & Sanchez-Herrera fam.n. (type genus: Mesagrion Selys, 1885) The single species of this monotypic family is a medium sized (hindwing 28–32 mm) damselfly restricted to the centraleastern sector of the Colombian Andes were it is found at small waterfalls of forest streams. Wings clear, with two Ax; several intercalated veins distally in radial fields; wings with long petiolation and arculus slightly distal to roughly at two-thirds of distance between wing base and node. Quadrangle without cross-veins; R4 originates at subnode; IR3 originates at level of first postnodal crossvein. Pterostigma, reddish in adult males, with anterior margin about half as long as posterior margin. Adults perch with wings closed. Head black with angulated frons and extensive yellow pattern, thorax black with yellow stripes, legs with long setae, pale yellow but the first pair with red; abdomen largely red becoming dark in adult females. In females large parts of the dorsum of segment 8 are scarcely sclerotized and have distinct yellow colour. Adult male cerci with a simple forcipate shape, paraprocts about as long as cerci and serrated at the distal fourth of the dorsal margin. Genital ligula with setae on shaft which are as long as segment width; apex divided into two sideward projecting lobes; the internal fold on the genital ligula present. Nymph with relatively large head and thorax and short abdomen; saccoid abdominal gills with long terminal filaments, that of the middle gill about twice as long as that of the lateral gills. Included genera: Mesagrion.
description: Published as part of Bybee, Seth M., Kalkman, Vincent J., Erickson, Robert J., Frandsen, Paul B., Breinholt, Jesse W., Suvorov, Anton, Dijkstra, Klaas-Douwe B., Cordero-Rivera, Adolfo, Skevington, Jeffrey H., Abbott, John C., Herrera, Melissa Sanchez, Lemmon, Alan R., Lemmon, Emily Moriarty & Ware, Jessica L., 2021, Phylogeny and classification of Odonata using targeted genomics, pp. 107115 in Molecular Phylogenetics and Evolution 160 on page 10, DOI: 10.1016/j.ympev.2021.107115, http://zenodo.org/record/6643504
Additional file 2 of Deciphering the roles of subcellular distribution and interactions involving the MEF2 binding region, the ankyrin repeat binding motif and the catalytic site of HDAC4 in Drosophila neuronal morphogenesis
Creators: name: Tan, Wei Jun
name: Hawley, Hannah R.
name: Wilson, Sarah J.
name: Fitzsimons, Helen L.
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2:
sj-docx-1-jva-10.1177_11297298231169468 – Supplemental material for Registered Nurses’ Association of Ontario (RNAO) best practice guideline on the assessment and management of vascular access devices
Creators: name: Buchanan, Christine
name: Burt, Amy
name: Moureau, Nancy
name: Murray, Darlene
name: Nizum, Nafsin
Publisher: name: SAGE Journals
Year: 2023
Subjects: Cardiology

description: Supplemental material, sj-docx-1-jva-10.1177_11297298231169468 for Registered Nurses’ Association of Ontario (RNAO) best practice guideline on the assessment and management of vascular access devices by Christine Buchanan, Amy Burt, Nancy Moureau, Darlene Murray and Nafsin Nizum in The Journal of Vascular Access
title: Data for: "Two-dimensional Vlasov simulations of fast stochastic electron heating in ionospheric modification experiments"
Creators: name: Speirs, David
name: Eliasson, Bengt
Publisher: name: University of Strathclyde
Year: 2017
Subjects: upper hybrid waves
electron Bernstein waves
stochastic electron heating

description: The dataset contains data from Vlasov simulations of the mode conversion and trapping of upper hybrid waves in a two-dimensional density depletion/striation. Nonlinear wave-couplings leading to upper hybrid and lower hybrid turbulence, and the excitation of electron Bernstein waves are studied, as well as stochastic heating of electrons by the large amplitude electrostatic waves. File details available in the README file.
Mesopodagrionidae Bybee & Kalkman & Erickson & Frandsen & Breinholt & Suvorov & Dijkstra & Cordero-Rivera & Skevington & Abbott & Herrera & Lemmon & Lemmon & Ware 2021, fam.n.
Creators: name: Bybee, Seth M.
name: Kalkman, Vincent J.
name: Erickson, Robert J.
name: Frandsen, Paul B.
name: Breinholt, Jesse W.
name: Suvorov, Anton
name: Dijkstra, Klaas-Douwe B.
name: Cordero-Rivera, Adolfo
name: Skevington, Jeffrey H.
name: Abbott, John C.
name: Herrera, Melissa Sanchez
name: Lemmon, Alan R.
name: Lemmon, Emily Moriarty
name: Ware, Jessica L.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Mesopodagrionidae

description: Mesopodagrionidae Kalkman & Abbott fam.n. (type genus: Mesopodagrion McLachlan, 1896) — fairly large (hindwing 27–33 mm) and sturdy damselflies restricted to streams in southern China and the north of Vietnam, Thailand and Myanmar. Wings clear, with two Ax and numerous intercalated veins distally in radial fields; arculus roughly at three-fifth of distance between wing base and node; quadrangle without cross-veins; R4 originates clearly proximal of subnode; IR3 originates at subnode. Pterostigma rectangular, about three times as long as broad; yellow-reddish or black. Adult perches with wings outstretched and abdomen held in horizontal position. Head, thorax, legs and abdomen black with yellowish or blue pattern, including antehumeral stripes that cross the humeral suture to continue onto the mesepimeron and (in males) the pale dorsum of abdominal segments 9 and 10. The postocular lobes are swollen and emphasized by the largely pale (yellow) back of the head, but lack postocular spots. Adult male cerci with a simple forcipate shape, paraprocts short, about a fifth the length of the cerci. Hind rim of abdominal segment 10 modified medially with two short but sturdy spines directed distally. Genital ligula with terminal lobe reduced, deeply incised, and with two long and slender horns; its shaft with < 10 setae on each side which are shorter than half the width of the shaft. Nymph is stocky and easily recognized by the large, flat and fanlike horizontal gills (only shared with the unrelated Argiolestidae and Protolestidae), as well as the occipital lobes that protrude distinctly at the side of the head and are are covered densely with strong spines. Included genera: Mesopodagrion.
description: Published as part of Bybee, Seth M., Kalkman, Vincent J., Erickson, Robert J., Frandsen, Paul B., Breinholt, Jesse W., Suvorov, Anton, Dijkstra, Klaas-Douwe B., Cordero-Rivera, Adolfo, Skevington, Jeffrey H., Abbott, John C., Herrera, Melissa Sanchez, Lemmon, Alan R., Lemmon, Emily Moriarty & Ware, Jessica L., 2021, Phylogeny and classification of Odonata using targeted genomics, pp. 107115 in Molecular Phylogenetics and Evolution 160 on page 10, DOI: 10.1016/j.ympev.2021.107115, http://zenodo.org/record/6643504
Additional file 1 of Asymmetric and parallel subgenome selection co-shape common carp domestication
Creators: name: Wang, Min
name: Li, Xinxin
name: Wang, Chongnv
name: Zou, Ming
name: Yang, Jing
name: Li, Xiang-dong
name: Guo, Baocheng
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Fig. S1. Bayesian model–based clustering analysis for 51 common carp individuals. Fig. S2. Population genetic parameter estimation. Fig. S3. Selection signals related to scale reduction. Fig. S4. Haplotype analyses in gene erbb4b and trim33 related to scale reduction. Fig. S5. Selection signals related to vibrant skin color. Fig. S6. Gene expression of the two parallel selected ohnolog pairs. Fig. S7. The putative selection sweep signals related to high growth rate. Fig. S8. Expression divergence between one-to-one ohnologs including genes associated with fast growth in European domesticated common carps. Fig. S9. The TE profile in one-to-one ohnolog pairs associated with high growth rate in European domesticated common carps. Fig. S10. SNPs density around one-to-one ohnolog pairs associated with high growth rate in European domesticated common carps.
Priscagrionidae Kalkman & Bybee 2021, fam.n.
Creators: name: Bybee, Seth M.
name: Kalkman, Vincent J.
name: Erickson, Robert J.
name: Frandsen, Paul B.
name: Breinholt, Jesse W.
name: Suvorov, Anton
name: Dijkstra, Klaas-Douwe B.
name: Cordero-Rivera, Adolfo
name: Skevington, Jeffrey H.
name: Abbott, John C.
name: Herrera, Melissa Sanchez
name: Lemmon, Alan R.
name: Lemmon, Emily Moriarty
name: Ware, Jessica L.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Priscagrionidae

description: Priscagrionidae Kalkman & Bybee fam.n. (type genus: Priscagrion Zhou & Wilson, 2001) — medium sized to fairly large (hindwing 28–30 mm in Sinocnemis, 34–36 mm in Priscagrion) damselflies with a slender appearance and long legs, restricted to streams in southern China and northern Vietnam. Wings clear except for an apical dark spot in males of Priscagrion, with two Ax in Sinocnemis and three (hindwing) to four (forewing) Ax in Priscagrion; numerous intercalated veins distally in radial fields, especially in Priscagrion. Arculus roughly at two-thirds of distance between wing base and node. Quadrangle without cross-veins; R4 originates clearly proximal of subnode; IR3 originates at subnode. Pterostigmata rectangular, about one and a half times as long as broad, clearly swollen in the middle; dark. Adults perch with wings outstretched and body held horizontal. Head, thorax and abdomen black witha blue pattern. The slender abdomen has a shining blue dorsal pattern on segment 8–10 (males) and a reduced and duller markings in females. Adult male cerci witha simple forcipate shape, paraprocts nearly as long as cerci and of a simple shape, carrying a tiny apical hook in Priscagrion. Shaft of genital ligula with > 20 setae on each side which areclearly longer than half the width of the shaft. Genital ligula ends in a simple scoop that folds back against the shaft; the internal fold on the genital ligula is slightly drawn-out in Sinocnemis and drawn-out into a long filament in Priscagrion. Nymph of both genera unknown. Included genera: Priscagrion and Sinocnemis.
description: Published as part of Bybee, Seth M., Kalkman, Vincent J., Erickson, Robert J., Frandsen, Paul B., Breinholt, Jesse W., Suvorov, Anton, Dijkstra, Klaas-Douwe B., Cordero-Rivera, Adolfo, Skevington, Jeffrey H., Abbott, John C., Herrera, Melissa Sanchez, Lemmon, Alan R., Lemmon, Emily Moriarty & Ware, Jessica L., 2021, Phylogeny and classification of Odonata using targeted genomics, pp. 107115 in Molecular Phylogenetics and Evolution 160 on page 10, DOI: 10.1016/j.ympev.2021.107115, http://zenodo.org/record/6643504
sj-docx-1-tag-10.1177_17562848231168237 – Supplemental material for The natural history of histological changes in microscopic colitis
Creators: name: Sehgal, Kanika
name: Tome, June
name: Kamboj, Amrit K.
name: Dierkhising, Ross A.
name: Pardi, Darrell S.
name: Khanna, Sahil
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: 111199 Nutrition and Dietetics not elsewhere classified
subject: FOS: Health sciences
subject: 111299 Oncology and Carcinogenesis not elsewhere classified
subject: FOS: Clinical medicine
subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified

description: Supplemental material, sj-docx-1-tag-10.1177_17562848231168237 for The natural history of histological changes in microscopic colitis by Kanika Sehgal, June Tome, Amrit K. Kamboj, Ross A. Dierkhising, Darrell S. Pardi and Sahil Khanna in Therapeutic Advances in Gastroenterology
Additional file 1 of DisoFLAG: accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model
Creators: name: Pang, Yihe
name: Liu, Bin
Publisher: name: figshare
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Cancer
subject: Mental Health

description: Additional file 1: Fig. S1. Visualization of the IG matrix. Table S1. The ontology term and its sub-terms for each disordered functional class. Table S2. The statistical information of the datasets. Table S3. The number of trainable variables and hyper-parameters of DisoFLAG. Table S4. The definition of evaluation metrics. Table S5. The performance ranking of DisoFLAG using different features. Table S6. The statistical significance of differences (p-value) in predictive performance by different methods on the DP93 test dataset. Table S7. Performance comparisons of DisoFLAG and other predictors on the DP94 independent test dataset. Table S8. The statistical significance of differences (p-value) in predictive performance by different methods on the DP94 test dataset. Table S9. Per-protein performance of different disordered function predictors on the DP93 test dataset. Table S10. Per-protein performance of different disordered function predictors on the DP94 test dataset. Table S11. Performance metrics for Disorder-Binding prediction on the CAID2 test dataset. Table S12. Performance metrics for Disorder-Linker prediction on the CAID2 test dataset. Table S13. Performance metrics for disorder prediction on the CAID2 Disorder-NOX and Disorder-PDB test datasets. Table S14. Per-protein performance of different disorder predictors on the CAID2 Disorder-NOX and Disorder-PDB test datasets.
sj-doc-1-ejo-10.1177_11206721231172534 - Supplemental material for Comparison of outcomes between cross-linking plus topoguided excimer laser ablation and intrastromal corneal ring segments for keratoconus
Creators: name: Pinheiro, Rosa L.
name: Rosa, Andreia M.
name: Monteiro, Tiago
name: Gil, João Q.
name: Costa, Ana Esmeralda
name: Tavares, Cristina
name: Quadrado, Maria João
name: Murta, Joaquim N.
Publisher: name: SAGE Journals
Year: 2023
Subjects: Medicine

description: Supplemental material, sj-doc-1-ejo-10.1177_11206721231172534 for Comparison of outcomes between cross-linking plus topoguided excimer laser ablation and intrastromal corneal ring segments for keratoconus by Rosa L. Pinheiro, Andreia M. Rosa, Tiago Monteiro, João Q. Gil, Ana Esmeralda Costa, Cristina Tavares, Maria João Quadrado and Joaquim N. Murta in European Journal of Ophthalmology
Protolestidae Dijkstra & Bybee 2021, fam.n.
Creators: name: Bybee, Seth M.
name: Kalkman, Vincent J.
name: Erickson, Robert J.
name: Frandsen, Paul B.
name: Breinholt, Jesse W.
name: Suvorov, Anton
name: Dijkstra, Klaas-Douwe B.
name: Cordero-Rivera, Adolfo
name: Skevington, Jeffrey H.
name: Abbott, John C.
name: Herrera, Melissa Sanchez
name: Lemmon, Alan R.
name: Lemmon, Emily Moriarty
name: Ware, Jessica L.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Protolestidae

description: Protolestidae Dijkstra & Bybee fam.n. (type genus: Protolestes Forster ¨, 1899) — medium-sized to fairly large (hindwing 21–32 mm) damselflies restricted to eastern Madagascar. Wings clear with two Ax and at most with intercalated vein between R3 and IR3; arculus roughly at two-thirds of distance between wing base and node; quadrangle without cross-veins; R4 originates roughly half a cell proximal to subnode and IR3 four to five cells distal to that; proximal supplementary cross-vein between median vein and R4 present; pterostigma swollen with very oblique proximal border. Adult variably perches with wings closed or half open, abdomen held roughly horizontal. Adult body red to black, often with bright and contrasting yellow to rufous markings, but never metallic or pruinose. Head notably wide, recalling some members of (unrelated) Platycnemididae. Genital ligula without setae on shaft, ending in two horn-like flagella. Adult male cerci forcipate, slender and rather smooth and simple, slightly widened subapically; paraprocts strongly reduced. The only available description of a nymph of Protolestes suggests that they have flat caudal gills which are held in a horizontal position. Included genera: Protolestes.
description: Published as part of Bybee, Seth M., Kalkman, Vincent J., Erickson, Robert J., Frandsen, Paul B., Breinholt, Jesse W., Suvorov, Anton, Dijkstra, Klaas-Douwe B., Cordero-Rivera, Adolfo, Skevington, Jeffrey H., Abbott, John C., Herrera, Melissa Sanchez, Lemmon, Alan R., Lemmon, Emily Moriarty & Ware, Jessica L., 2021, Phylogeny and classification of Odonata using targeted genomics, pp. 107115 in Molecular Phylogenetics and Evolution 160 on page 10, DOI: 10.1016/j.ympev.2021.107115, http://zenodo.org/record/6643504
sj-pdf-1-srd-10.1177_23780231231169259 – Supplemental material for On Track or Off Track? Identifying a Typology of Math Course-Taking Sequences in U.S. High Schools
Creators: name: Han, Seong Won
name: Kang, Chungseo
name: Weis, Lois
name: Dominguez, Rachel
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: Sociology
subject: FOS: Sociology

description: Supplemental material, sj-pdf-1-srd-10.1177_23780231231169259 for On Track or Off Track? Identifying a Typology of Math Course-Taking Sequences in U.S. High Schools by Seong Won Han, Chungseo Kang, Lois Weis and Rachel Dominguez in Socius
Additional file 1 of Development of prescribing indicators related to opioid-related harm in patients with chronic pain in primary care—a modified e-Delphi study
Creators: name: Bansal, Neetu
name: Campbell, Stephen M.
name: Lin, Chiu-Yi
name: Ashcroft, Darren M.
name: Chen, Li-Chia
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Pharmacology
Biotechnology
Cancer
Science Policy
Mental Health

description: Additional file 1. Information sources for retrieving indicators related to the safety of opioid prescribing.
The Development and Validation of the Measurement of Middle School Students’ Three Types of Personal Relevance to a Math Class
Creators: name: Fryer, Luke K.
name: Zhixing, Guo
Publisher: name: OSF Registries
Year: 2024
Subjects: subject: Educational Psychology
subject: Education

description: The Development and Validation of the Measurement of Middle School Students’ Three Types of Personal Relevance to a Math Class
sj-docx-1-car-10.1177_19476035231206258 – Supplemental material for In Vitro Evaluation of Lateral Femur Condyle Free Chondral Fragment Swelling after Soaking in Normal Saline
Creators: name: Montgomery, Carver
name: Scalisi, Wayne
name: Robinson, James
name: Sherman, William
name: Solitro, Giovanni F.
name: Massey, Patrick
Publisher: name: SAGE Journals
Year: 2023
Subjects: Orthopaedics
Sports Medicine
Surgery
Biological Sciences not elsewhere classified

description: Supplemental material, sj-docx-1-car-10.1177_19476035231206258 for In Vitro Evaluation of Lateral Femur Condyle Free Chondral Fragment Swelling after Soaking in Normal Saline by Carver Montgomery, Wayne Scalisi, James Robinson, William Sherman, Giovanni F. Solitro and Patrick Massey in CARTILAGE
Additional file 2 of Development of prescribing indicators related to opioid-related harm in patients with chronic pain in primary care—a modified e-Delphi study
Creators: name: Bansal, Neetu
name: Campbell, Stephen M.
name: Lin, Chiu-Yi
name: Ashcroft, Darren M.
name: Chen, Li-Chia
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Pharmacology
Biotechnology
Cancer
Science Policy
Mental Health

description: Additional file 2. Inclusion and exclusion criteria for identifying the potential opioid safety prescribing indicators.
Hepatitis B Virus research at the University of Oxford – poster for World Hepatitis Day 2017
Creators: name: McNaughton, Anna
name: Matthews, Philippa
Publisher: name: F1000Research
Year: 2017

description: This is a poster created for World Hepatitis Day (28th July 2017) to showcase work that is being done by researchers at the University of Oxford on Hepatitis B Virus (HBV). The aim is to increase discussion and awareness of the relevance of viral hepatitis infection, and to stimulate interest in a range of areas that we work on, ranging from laboratory science to clinical work with patients, tackling stigma, and engaging school children.
"I Don't Really Like the Mill; In Fact, I Hate the Mill": Changing Youth Vocationalism Under Fordism and Post-Fordism in Powell River, British Columbia
Creators: name: Behrisch, Tanya
name: Hayter, Roger
name: Barnes, Trevor
Publisher: name: BC Studies: The British Columbian Quarterly
Year: 2010

description: BC Studies: The British Columbian Quarterly, No 136: Winter 2002/03
Tale-Telling Women and Telling Tales of Women
Creators: name: Brim, Connie
Publisher: name: BC Studies: The British Columbian Quarterly
Year: 2010

description: • Wild West Women: Travellers, Adventurers and Rebels by Rosemary Neering
• Hobnobbing with a Countess and Other Okanagan Adventures: The Diaries of Alice Barrett Parke, 1891-1900 by Jo Fraser Jones
• The Judge's Wife: Memoirs of a British Columbia Pioneer by Eunice M.L. Harrison
• Telling Tales: Essays in Western Women's History by Catherine A. Cavanaugh, Randi R. Warne
description: BC Studies: The British Columbian Quarterly, No 136: Winter 2002/03
Additional file 3 of Development of prescribing indicators related to opioid-related harm in patients with chronic pain in primary care—a modified e-Delphi study
Creators: name: Bansal, Neetu
name: Campbell, Stephen M.
name: Lin, Chiu-Yi
name: Ashcroft, Darren M.
name: Chen, Li-Chia
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Pharmacology
Biotechnology
Cancer
Science Policy
Mental Health

description: Additional file 3. Key characteristics in each scenario.
National Parks: What are they good for?
Creators: name: Murton, James
Publisher: name: BC Studies: The British Columbian Quarterly
Year: 2010

description: • Guardians of the Wild: A History of the Warden Service of Canada's National Parks by Robert J. Burns, Mike Schintz
• Phantom Parks: The Struggle to Save Canadas National Parks by Rick Searle
• Natural Selections: National Parks in Atlantic Canada, 1935-1970 by Alan McEachern
• Where the Mountains Meet the Prairies: A History of Waterton Country by Graham A. MacDonald
description: BC Studies: The British Columbian Quarterly, No 136: Winter 2002/03
A Computational Model of Ventricular Dimensions and Hemodynamics in Growing Infants
Creators: name: Hiebing, Ashley
name: Pieper, Riley
name: Witzenburg, Colleen M.
Publisher: name: Health Research Alliance
Year: 2024
Subjects: classificationCode: 320101
subject: Cardiology (incl. cardiovascular diseases)

description:  Previous computer models have successfully predicted cardiac growth and remodeling in adults with pathologies. However, applying these models to infants is complicated by the fact that they also undergo normal, somatic cardiac growth and remodeling. Therefore, we designed a computational model to predict ventricular dimensions and hemodynamics in healthy, growing infants by modifying an adult canine left ventricular growth model. The heart chambers were modeled as time-varying elastances coupled to a circuit model of the circulation. Circulation parameters were allometrically scaled and adjusted for maturation to simulate birth through 3 yrs of age. Ventricular growth was driven by perturbations in myocyte strain. The model successfully matched clinical measurements of pressures, ventricular and atrial volumes, and ventricular thicknesses within two standard deviations of multiple infant studies. To test the model, we input 10th and 90th percentile infant weights. Predicted volumes and thicknesses decreased and increased within normal ranges and pressures were unchanged. When we simulated coarctation of the aorta, systemic blood pressure, left ventricular thickness, and left ventricular volume all increased, following trends in clinical data. Our model enables a greater understanding of somatic and pathological growth in infants with congenital heart defects. Its flexibility and computational efficiency when compared to models employing more complex geometries allow for rapid analysis of pathological mechanisms affecting cardiac growth and hemodynamics.
Book Reviews
Creators: name: Reviews, Book
Publisher: name: BC Studies: The British Columbian Quarterly
Year: 2010

description: • On the Edge of Empire: Gender, Race and the Making of British Columbia, 1849-1871 by Adele Perry

-Reviewed by Sarah Carter (pgs: 117-9)
• Common and Contested Ground: A Human and Environmental History of the Northwestern Plains by Theodore Binnema

-Reviewed by Matthew Evenden (pgs: 120-1)
• Contested Empire: Peter Skene Ogden and the Snake River Expeditions by John Phillip Reid
• Patterns of Vengeance: Cross cultural Homicide in the North American Fur Trade by John Phillip Reid

-Reviewed by Theodore Binnema (pgs: 122-5)
• The War on Weeds in the Prairie West: An Environmental History by Clinton L. Evans

-Reviewed by Tina Loo (pgs: 125-7)
• Playing the Pacific Province: Jim Anthology of British Columbia Plays, 1967-2000 by James Hoffman, Ginny Ratsoy

-Reviewed by Jerry Wasserman (pgs: 128-9)
• Faces in the Forest: First Nations Art Created on Living Trees by Michael D. Blackstock

-Reviewed by Kathryn Bunn-Marcuse (pgs: 129-31)
• All Amazed for Roy Kiyooka by Scott Watson, John O'Brian

-Reviewed by David Howard (pgs: 131-2)
• Sights of Resistance: Approaches to Canadian Visual Culture by Robert J. Belton

-Reviewed by David Millar (pgs: 133-4)
• Challenging the Conspiracy of Silence: My Life as a Canadian Gay Activist by Jim Egan

-Reviewed by Becki Ross (pgs: 135-8)
• Bluesprint: Black British Columbian Literature and Culture by Wayde Compton

-Reviewed by Sneja Gunew (pgs: 138-40)
• NFB Kids: Portrayals of Children by the National Film Board of Canada, 1939-1989 by Brian J. Low

-Reviewed by Rebecca Coulter (pgs: 140- 1)
• The Chinese in Vancouver: The Pursuit of Identity and Power by Wing Chung Ng
• Paper Shadows: A Chinatown Childhood by Wayson Choy

-Reviewed by Lisa Rose Mar (pgs: 142-4)
• Ships of Steel, A British Columbia Shipbuilder's Story by T.A. McLaren

-Reviewed by (pgs: 144-5)
• Guilty of Everything by John Armstrong
• Direct Action: Memoirs of an Urban Guerrilla by Ann Hansen

-Reviewed by Scott Beadle (pgs: 146-8)
• Mine by Steven Collis

-Reviewed by Robert McIntosh (pgs: 149-50)
description: BC Studies: The British Columbian Quarterly, No 136: Winter 2002/03
sj-docx-7-dhj-10.1177_20552076231205750 - Supplemental material for Exploring the barriers and facilitators for supporting adolescents with knee pains adherence to mobile health apps: A think-aloud study
Creators: name: Johansen, Simon Kristoffer
name: Kanstrup, Anne Marie
name: Thomsen, Janus Laust
name: Christensen, Mads Norre
name: Rathleff, Michael Skovdal
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: Health and Community Services
subject: Cardiology
subject: Endocrinology
subject: Geriatrics and Gerontology
subject: Nursing not elsewhere classified
subject: Oncology and Carcinogenesis not elsewhere classified
subject: Aged Health Care
subject: Public Health and Health Services not elsewhere classified
subject: Engineering not elsewhere classified
subject: Anthropology
subject: FOS: Sociology
subject: Cultural Studies not elsewhere classified
subject: Information and Computing Sciences not elsewhere classified
subject: Organisation and Management Theory
subject: Science Policy
subject: Social Policy
subject: Sociology

description: Supplemental material, sj-docx-7-dhj-10.1177_20552076231205750 for Exploring the barriers and facilitators for supporting adolescents with knee pains adherence to mobile health apps: A think-aloud study by Simon Kristoffer Johansen, Anne Marie Kanstrup, Janus Laust Thomsen, Mads Norre Christensen and Michael Skovdal Rathleff in DIGITAL HEALTH
Additional file 4 of Development of prescribing indicators related to opioid-related harm in patients with chronic pain in primary care—a modified e-Delphi study
Creators: name: Bansal, Neetu
name: Campbell, Stephen M.
name: Lin, Chiu-Yi
name: Ashcroft, Darren M.
name: Chen, Li-Chia
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Pharmacology
Biotechnology
Cancer
Science Policy
Mental Health

description: Additional file 4. The nine-point Likert scale rating system.
Additional file 5 of Development of prescribing indicators related to opioid-related harm in patients with chronic pain in primary care—a modified e-Delphi study
Creators: name: Bansal, Neetu
name: Campbell, Stephen M.
name: Lin, Chiu-Yi
name: Ashcroft, Darren M.
name: Chen, Li-Chia
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Pharmacology
Biotechnology
Cancer
Science Policy
Mental Health

description: Additional file 5. Consensus on Opioid Safety Prescribing Indicators Questionnaire –Round 1.
sj-docx-4-dhj-10.1177_20552076231205272 - Supplemental material for Compas-Y: A mixed methods pilot evaluation of a mobile self-compassion training for people with newly diagnosed cancer
Creators: name: Austin, Judith
name: Schroevers, Maya J
name: Van Dijk, Jelle
name: Sanderman, Robbert
name: Børøsund, Elin
name: Wymenga, A Machteld N
name: Bohlmeijer, Ernst T
name: Drossaert, Constance H.C.
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: Health and Community Services
subject: Cardiology
subject: Endocrinology
subject: Geriatrics and Gerontology
subject: Nursing not elsewhere classified
subject: Oncology and Carcinogenesis not elsewhere classified
subject: Aged Health Care
subject: Public Health and Health Services not elsewhere classified
subject: Engineering not elsewhere classified
subject: Anthropology
subject: FOS: Sociology
subject: Cultural Studies not elsewhere classified
subject: Information and Computing Sciences not elsewhere classified
subject: Organisation and Management Theory
subject: Science Policy
subject: Social Policy
subject: Sociology

description: Supplemental material, sj-docx-4-dhj-10.1177_20552076231205272 for Compas-Y: A mixed methods pilot evaluation of a mobile self-compassion training for people with newly diagnosed cancer by Judith Austin, Maya J Schroevers, Jelle Van Dijk, Robbert Sanderman, Elin Børøsund, A Machteld N Wymenga, Ernst T Bohlmeijer and Constance H.C. Drossaert in DIGITAL HEALTH
Additional file 6 of Development of prescribing indicators related to opioid-related harm in patients with chronic pain in primary care—a modified e-Delphi study
Creators: name: Bansal, Neetu
name: Campbell, Stephen M.
name: Lin, Chiu-Yi
name: Ashcroft, Darren M.
name: Chen, Li-Chia
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Pharmacology
Biotechnology
Cancer
Science Policy
Mental Health

description: Additional file 6. Consensus on Opioid Safety Prescribing Indicators Questionnaire -Round 2.
Evaluation of physiological noise cleaning methods at high-resolution across cortical depth
Creators: name: Hall, Andrew
name: Huber, Laurentius
name: Handwerker, Daniel A
name: Gonzalez-Castillo, Javier
name: Topolski, Natasha
name: Jangraw, David
name: Bandettini, Peter A
Publisher: name: F1000Research
Year: 2017

description: While physiological noise cleaning in fMRI is well studied at conventional resolutions of 2-4 mm voxels at 3T, it is just starting to be characterized in submillimeter fMRI at 7T (Polimeni 2015). As neuroimaging moves toward higher resolution and finer detail (e.g. cortical layers), it is not established how important these methods become. As physiological noise is not distributed uniformly throughout the brain, physiological fluctuations might introduce substantial unwanted biases across fine structures, despite thermal noise dominating physiological noise in submillimeter voxels (Huber 2016). Here, we examine different methods of physiological noise cleaning, and their respective efficacies in cortical depth-dependent resting-state fMRI using conventional gradient echo BOLD and blood volume sensitive Vascular Space Occupancy (VASO) fMRI.
Biopython Project Update 2017
Creators: name: Sourav Singh
name: Brueffer, Christian
name: Cock, Peter
name: Contributors, The Biopython
Publisher: name: F1000Research
Year: 2017

description: The Biopython Project is a long-running distributed collaborative effort, supported by the Open Bioinformatics Foundation, which develops a freely available Python library for biological computation [1]. We present here details of the Biopython releases since BOSC 2016, namely Biopython 1.68, 1.69 and 1.70. Together these had 82 named contributors including 51 newcomers which reflects our policy of trying to encourage even small contributions.

Biopython 1.68 (August 2016) was a relatively small release, with the main new feature being support for RSSB’s new binary Macromolecular Transmission Format (MMTF) for structural data.

Biopython 1.69 (April 2017) represents the start of our re-licensing plan, to transition away from our liberal but unique Biopython License Agreement to the similar but very widely used 3-Clause BSD License. We are reviewing the code base authorship file-by-file, in order to gradually dual license the entire project. Major new features include: a new parser for the ExPASy Cellosaurus cell line database, catalogue and ontology; support for the UCSC Multiple Alignment Format (MAF), FSA sequencing files, version 4 of the Affymetrix CEL format; updates to the REBASE February 2017 restriction enzyme list; Bio.PDB.PDBList now can download more formats including MMTF; enhanced PyPy support by taking advantage of NumPy and compiling most of the Biopython C code modules.

Biopython 1.70 (July 2017) has internal changes to better support the now standard pip tool for Python package installation. Major new features include: support for Mauve’s eXtended Multi-FastA (XMFA) file format, updates to our BLAST XML and MEME parsers, ExPASy support, and phylogenetic distance matrices. This release is noteworthy for our new logo, contributed by Patrick Kunzmann. This draws on our original double helix logo, and the blue and yellow colors of the current Python logo.

All releases fixed miscellaneous bugs, enhanced the test suite, and continued efforts to follow the PEP8 and PEP257 coding style guidelines which is now checked automatically with GitHub-integrated continuous integration testing using TravisCI. We now also use AppVeyor for continuous integration testing under Windows. Current efforts include improving the unit test coverage, which is easily viewed online at CodeCov.io.
sj-docx-1-msc-10.1177_09691413231208160 - Supplemental material for Overcoming barriers to lung cancer screening using a systemwide approach with additional focus on the non-screened
Creators: name: Gieske, Michael R
name: Kerns, Jessica
name: Schmitt, Gary M
name: Kloecker, Goetz
name: Budhani, Irfan A
name: Nolan, Joseph
name: Williams, Valerie A
name: Alkapalan, Deema
name: Ferguson, Katelyn
name: Yadav, Ryan
name: Calhoun, Royce F
Publisher: name: SAGE Journals
Year: 2023
Subjects: Health and Community Services
Obstetrics and Gynaecology

description: Supplemental material, sj-docx-1-msc-10.1177_09691413231208160 for Overcoming barriers to lung cancer screening using a systemwide approach with additional focus on the non-screened by Michael R Gieske, Jessica Kerns, Gary M Schmitt, Goetz Kloecker, Irfan A Budhani, Joseph Nolan, Valerie A Williams, Deema Alkapalan, Katelyn Ferguson, Ryan Yadav and Royce F Calhoun in Journal of Medical Screening
Republic of Learning 7: Atmospheric Commons Documentation
Creators: name: Lane, Giles
name: Jacobs, Rachel
name: Dickson, Erin
Publisher: name: Zenodo
Year: 2021
Subjects: climate data
art
engagement

description: A bookleteer booklet documenting a Republic of Learning remote online workshop in June 2021. Published by Proboscis. Browse the online version: https://bookleteer.com/book.html?id=3501#page/1/mode/2up Download the PDF: https://bookleteer.com/publication.html?id=3501
Supporting curation communities and collecting technical dividends.
Creators: name: Munoz-Torres, Monica
name: Dunn, Nathan
name: Carbon, Seth
name: Unni, Deepak
name: Yao, Eric
name: Elsik, Christine
name: Holmes, Ian
name: Lewis, Suzanna
Publisher: name: F1000Research
Year: 2017

description: Scientific research is inherently a collaborative task; for curation of genome annotations, this means a dialog within and between communities of researchers to reach a shared understanding of the biology underlying the sequences. Here we describe our experience developing software to support an increasing number of genome curation communities, emphasizing the collection of technical contributions as unexpected dividends in the process.

Annotation tools help improve curation quality, and in many research groups, they constitute a means to introducing human curation to the annotation process for the first time. To facilitate the dialog between and within communities of curators, our team has developed a number of web-based tools, among them Apollo, a widely-adopted genome annotation editor designed to support structural curation of gene models in a collaborative, real-time fashion. Apollo, built on top JBrowse (http://jbrowse.org/), presents a set of tooling for data extraction and integration that allows users to generate analysis-ready data and progress reports; it also offers a secure web-service API to programmatically perform annotations, to integrate Apollo with workflow tools (e.g. Galaxy https://galaxyproject.org/, via Docker https://www.docker.com/), etc.

We have dedicated considerable efforts to spread the word about Apollo (i.e. talks and workshops to train the community on installation and use), and to continuously make improvements to support the needs of the growing research community that forms our user base. It is currently used in more than one hundred genome annotation projects around the world and across the tree of life. Recently, these improvements have included technical contributions from developers outside our core group, ranging from productive discussions, to organizing public hackathons, to welcoming code contributions to Apollo’s main development branch. This means that a portion of our target communities both have an interest in creating an ideal curation environment for their research objectives using Apollo, and are choosing to prioritize investing their resources to achieve it. It is also evidence that our efforts to support curators with an open-source, community-based bioinformatics tool have been so far successful. And as a result, we are receiving extensive technical contributions from these communities, an unexpected return on these efforts that both supports our mission and improves the workflow for our community of users.

Project Website: http://genomearchitect.org/
Source Code: https://github.com/GMOD/Apollo
License: Berkeley Software Distribution (BSD-3).
Additional file 7 of Development of prescribing indicators related to opioid-related harm in patients with chronic pain in primary care—a modified e-Delphi study
Creators: name: Bansal, Neetu
name: Campbell, Stephen M.
name: Lin, Chiu-Yi
name: Ashcroft, Darren M.
name: Chen, Li-Chia
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Pharmacology
Biotechnology
Cancer
Science Policy
Mental Health

description: Additional file 7. Summary of first-round results for one individual panellist.
Tatocnemididae R´acenis, 1959
Creators: name: Bybee, Seth M.
name: Kalkman, Vincent J.
name: Erickson, Robert J.
name: Frandsen, Paul B.
name: Breinholt, Jesse W.
name: Suvorov, Anton
name: Dijkstra, Klaas-Douwe B.
name: Cordero-Rivera, Adolfo
name: Skevington, Jeffrey H.
name: Abbott, John C.
name: Herrera, Melissa Sanchez
name: Lemmon, Alan R.
name: Lemmon, Emily Moriarty
name: Ware, Jessica L.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy

description: Tatocnemididae R´acenis, 1959 stat. res. (type genus: Tatocnemis Kirby, 1889) — medium-sized to fairly large (hindwing 22–32 mm) damselflies restricted to eastern Madagascar. Wings clear, at most stained toward tips, with two Ax and no intercalated veins distally in radial fields; arculus roughly at two-thirds of distance between wing base and node; quadrangle without cross-veins; R 4 originates at subnode and IR3 one or two cells distal to that; proximal supplementary crossvein between median vein and R 4 present; pterostigma rhomboidal; wing tips crenulated, i.e. wavy rather than smoothly rounded due to two or three shallow excavations in the hind border below the pterostigma. Adult variably perches with wings closed or open, abdomen held roughly horizontal. Adult thorax black with dull yellow to reddish markings, abdomen uniformly red, body never metallic or pruinose. Genital ligula with setae on shaft, ending in two curled flagella. Adult male cerci forcipate, relatively thick, usually with distinct subapical expansion on inner margin and denticles on outer margin; paraprocts reduced to simple point. The only description available suggests that the caudal gills are long and inflated, thus appearing sausage-shaped, with a long apical filament. Included genera: Tatocnemisdj
description: Published as part of Bybee, Seth M., Kalkman, Vincent J., Erickson, Robert J., Frandsen, Paul B., Breinholt, Jesse W., Suvorov, Anton, Dijkstra, Klaas-Douwe B., Cordero-Rivera, Adolfo, Skevington, Jeffrey H., Abbott, John C., Herrera, Melissa Sanchez, Lemmon, Alan R., Lemmon, Emily Moriarty & Ware, Jessica L., 2021, Phylogeny and classification of Odonata using targeted genomics, pp. 107115 in Molecular Phylogenetics and Evolution 160 on page 11, DOI: 10.1016/j.ympev.2021.107115, http://zenodo.org/record/6643504
description: {"references": ["R'acenis, J., 1959. Notas taxonomicas sobre la familia Megapodagrionidae (Odonata: Zygoptera) con la sinopsis de las especies venezolanas. Acta Biologica Venezolana 2 (30), 335 - 367."]}
sj-pdf-1-cjb-10.1177_00938548231202800 – Supplemental material for Alcohol Consumption and Violent Offending: Findings From a Longitudinal Study on Korean Youth from Mid to Late Adolescence
Creators: name: Lee, Yeungjeom
name: Cardwell, Stephanie M.
name: Kim, Jihoon
Publisher: name: SAGE Journals
Year: 2023
Subjects: Public Health and Health Services not elsewhere classified
Criminology not elsewhere classified
Psychology not elsewhere classified

description: Supplemental material, sj-pdf-1-cjb-10.1177_00938548231202800 for Alcohol Consumption and Violent Offending: Findings From a Longitudinal Study on Korean Youth from Mid to Late Adolescence by Yeungjeom Lee, Stephanie M. Cardwell and Jihoon Kim in Criminal Justice and Behavior
sj-docx-1-imj-10.1177_10815589231204057 – Supplemental material for Association between monocyte to high-density lipoprotein-cholesterol ratio and osteoporosis: an analysis of the National Health and Nutrition Examination Survey 2013–2014
Creators: name: Zhou, Fushan
name: Wu, Liyong
name: Shen, Guizhou
name: Chen, Xintan
name: Liu, Chaoyang
name: Huang, Dongqin
name: Li, Mingmei
name: Xie, Chengwei
name: Zhan, Ruyu
Publisher: name: SAGE Journals
Year: 2023
Subjects: Medicine

description: Supplemental material, sj-docx-1-imj-10.1177_10815589231204057 for Association between monocyte to high-density lipoprotein-cholesterol ratio and osteoporosis: an analysis of the National Health and Nutrition Examination Survey 2013–2014 by Fushan Zhou, Liyong Wu, Guizhou Shen, Xintan Chen, Chaoyang Liu, Dongqin Huang, Mingmei Li, Chengwei Xie and Ruyu Zhan in Journal of Investigative Medicine
Additional file 8 of Development of prescribing indicators related to opioid-related harm in patients with chronic pain in primary care—a modified e-Delphi study
Creators: name: Bansal, Neetu
name: Campbell, Stephen M.
name: Lin, Chiu-Yi
name: Ashcroft, Darren M.
name: Chen, Li-Chia
Publisher: name: figshare
Year: 2024
Subjects: Medicine
Pharmacology
Biotechnology
Cancer
Science Policy
Mental Health

description: Additional file 8. Scoping the identified potential opioid safety prescribing indicators.
sj-docx-2-jpx-10.1177_23743735231211886 - Supplemental material for International Classification of Function, Disability and Health (ICF) Word Mapping to Determine the Human Functioning Associated with Upper Extremity Surgery for Tetraplegia
Creators: name: Anne Sinnott Jerram, K
name: Dunn, Jennifer A
name: Smaill, Richard P
name: Middleton, James W
Publisher: name: SAGE Journals
Year: 2023
Subjects: Health and Community Services
Medicine

description: Supplemental material, sj-docx-2-jpx-10.1177_23743735231211886 for International Classification of Function, Disability and Health (ICF) Word Mapping to Determine the Human Functioning Associated with Upper Extremity Surgery for Tetraplegia by K Anne Sinnott Jerram, Jennifer A Dunn, Richard P Smaill and James W Middleton in Journal of Patient Experience
sj-docx-1-sms-10.1177_20563051231207853 – Supplemental material for Emotion Work on Social Media: Differences in Public and Private Emotions about Politics and COVID-19 on Facebook
Creators: name: Van Duyn, Emily
name: Muddiman, Ashley
Publisher: name: SAGE Journals
Year: 2023
Subjects: Communication and Media Studies not elsewhere classified

description: Supplemental material, sj-docx-1-sms-10.1177_20563051231207853 for Emotion Work on Social Media: Differences in Public and Private Emotions about Politics and COVID-19 on Facebook by Emily Van Duyn and Ashley Muddiman in Social Media + Society
sj-docx-1-ine-10.1177_15910199231210411 - Supplemental material for Distal versus conventional transradial access for diagnostic cerebral angiography and neurointerventional procedures: A systematic review and meta-analysis
Creators: name: Orscelik, Atakan
name: Senol, Yigit Can
name: Kobeissi, Hassan
name: Ghozy, Sherief
name: Bilgin, Cem
name: Arul, Santhosh
name: Kadirvel, Ramanathan
name: Brinjikji, Waleed
name: Kallmes, David F
Publisher: name: SAGE Journals
Year: 2023
Subjects: subject: Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: Neuroscience

description: Supplemental material, sj-docx-1-ine-10.1177_15910199231210411 for Distal versus conventional transradial access for diagnostic cerebral angiography and neurointerventional procedures: A systematic review and meta-analysis by Atakan Orscelik, Yigit Can Senol, Hassan Kobeissi, Sherief Ghozy, Cem Bilgin, Santhosh Arul, Ramanathan Kadirvel, Waleed Brinjikji and David F Kallmes in Interventional Neuroradiology