cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
A Comparison of deep learning methods for environmental sound
Creators: name: Li, Juncheng
name: Dai, Wei
name: Metze, Florian
name: Qu, Shuhui
name: Das, Samarjit
Publisher: name: arXiv
Year: 2017
Subjects: subject: Sound (cs.SD)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences
subject: 14J60 (Primary)

description: Environmental sound detection is a challenging application of machine learning because of the noisy nature of the signal, and the small amount of (labeled) data that is typically available. This work thus presents a comparison of several state-of-the-art Deep Learning models on the IEEE challenge on Detection and Classification of Acoustic Scenes and Events (DCASE) 2016 challenge task and data, classifying sounds into one of fifteen common indoor and outdoor acoustic scenes, such as bus, cafe, car, city center, forest path, library, train, etc. In total, 13 hours of stereo audio recordings are available, making this one of the largest datasets available. We perform experiments on six sets of features, including standard Mel-frequency cepstral coefficients (MFCC), Binaural MFCC, log Mel-spectrum and two different large- scale temporal pooling features extracted using OpenSMILE. On these features, we apply five models: Gaussian Mixture Model (GMM), Deep Neural Network (DNN), Recurrent Neural Network (RNN), Convolutional Deep Neural Net- work (CNN) and i-vector. Using the late-fusion approach, we improve the performance of the baseline 72.5% by 15.6% in 4-fold Cross Validation (CV) avg. accuracy and 11% in test accuracy, which matches the best result of the DCASE 2016 challenge. With large feature sets, deep neural network models out- perform traditional methods and achieve the best performance among all the studied methods. Consistent with other work, the best performing single model is the non-temporal DNN model, which we take as evidence that sounds in the DCASE challenge do not exhibit strong temporal dynamics.
description: 5 pages including reference
Rural veterinary practice
Creators: name: Goehl, Daniel R.
Publisher: name: American Association of Bovine Practitioners  Proceedings of the Annual Conference
Year: 2018

description: The beef industry is steeped in tradition. This is 1 aspect that draws producers into the industry and entices generation to follow generation. While it is always good to honor tradition at the same time one must adapt to the changing times. It has been said the change is neither inherently good nor bad; just inevitable. As veterinarians we also have traditions that shape our industry. It is up to us to shape the practice that we work in to make it an acceptable environment that we are willing to work in. One of the areas that we must focus on is helping our clientele become comfortable with a mindset that will allow us to provide them the beneficial services we can offer. The challenge for the practitioner is to provide high quality service to their clientele and receive adequate financial compensation for these efforts. The practice I work in is not the model practice that every practitioner should strive for. What works for one practitioner may not fit another's personality or skill set. As veterinarians being pulled in several directions by the general public, it is easy to lose sight of trying to enjoy the journey.
description: American Association of Bovine Practitioners Proceedings of the Annual Conference, 2018 Recent Graduate Proceedings
NFFA-Europe Pilot - D2.7 - Second assessment of access provision
Creators: name: Fonseca, Luis
name: Colpo, Pascal
name: Ekinci, Yasin
name: Kazazis, Dimitiros
name: Maximov, Ivan
name: Obradors, Xavier
name: Frontera, Carlos
name: Aversa, Rossella
name: Anson, Susan
name: Stratakis, Emmanuel
name: Kavatzikidou, Evi
name: Klini, Argyro
name: Piccinin, Simone
name: Orani, Daniela
Publisher: name: Zenodo
Year: 2024

description: Analysis of the demand, of the use of the IDRIN and of new potential developments.
description: WP2 MGT2 - Pilot scheme for the management of a distributed research infrastructure offering harmonized, interoperable and integrated services
Scale_self-evaluation_NF1_visibility_16abril2021.pdf
Creators: name: Bicudo, Natália
name: Melo, Débora
Publisher: name: figshare
Year: 2022
Subjects: subject: 110311 Medical Genetics (excl. Cancer Genetics)
subject: FOS: Basic medicine
subject: 110304 Dermatology
subject: FOS: Clinical medicine

description: A scale to assess the visibility of NF1, which can be accessed remotely and applied by the own patient.
Prediction of Sea Surface Temperature using Long Short-Term Memory
Creators: name: Zhang, Qin
name: Wang, Hui
name: Dong, Junyu
name: Zhong, Guoqiang
name: Sun, Xin
Publisher: name: arXiv
Year: 2017
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: This letter adopts long short-term memory(LSTM) to predict sea surface temperature(SST), which is the first attempt, to our knowledge, to use recurrent neural network to solve the problem of SST prediction, and to make one week and one month daily prediction. We formulate the SST prediction problem as a time series regression problem. LSTM is a special kind of recurrent neural network, which introduces gate mechanism into vanilla RNN to prevent the vanished or exploding gradient problem. It has strong ability to model the temporal relationship of time series data and can handle the long-term dependency problem well. The proposed network architecture is composed of two kinds of layers: LSTM layer and full-connected dense layer. LSTM layer is utilized to model the time series relationship. Full-connected layer is utilized to map the output of LSTM layer to a final prediction. We explore the optimal setting of this architecture by experiments and report the accuracy of coastal seas of China to confirm the effectiveness of the proposed method. In addition, we also show its online updated characteristics.
description: 5 page, 5 figures
Positive definite functions on Coxeter groups with applications to operator spaces and noncommutative probability
Creators: name: Bożejko, Marek
name: Gal, Światosław R.
name: Młotkowski, Wojciech
Publisher: name: arXiv
Year: 2017
Subjects: subject: Operator Algebras (math.OA)
subject: Combinatorics (math.CO)
subject: Group Theory (math.GR)
subject: FOS: Mathematics
subject: 20F55, 43A35, 46L07, 05A15, 43A46

description: A new class of positive definite functions related to colour-length function on arbitrary Coxeter group is introduced. Extensions of positive definite functions, called the Riesz-Coxeter product, from the Riesz product on the Rademacher (Abelian Coxeter) group to arbitrary Coxeter group is obtained. Applications to harmonic analysis, operator spaces and noncommutative probability is presented. Characterization of radial and colour-radial functions on dihedral groups and infinite permutation group are shown.
description: 26 pages, 2 figures
Additional file 1: of Iodine content of dietary salt at household level and associated factors using Iodometric titration methods in Dera District, Northwest Ethiopia
Creators: name: Zelalem Anteneh
name: Melese Engidayehu
name: Gedefaw Abeje
Publisher: name: figshare
Year: 2017
Subjects: subject: Medicine
subject: Molecular Biology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: The English Version Questionnaires. (DOCX 30 kb)
Trace minerals in cattle
Creators: name: Havenga, Lourens J.
Publisher: name: American Association of Bovine Practitioners  Proceedings of the Annual Conference
Year: 2018

description: Reproductive performance is 1 of the key economic drivers in both beef and dairy production. The roles of various trace minerals in cattle reproduction have been well documented. Identifying key risk periods of imbalance of these trace minerals, due to normal physiological events like maternal transfer or environmental exposure to antagonistic minerals, may enable practitioners to formulate supplemental strategies to minimize the risk and improve or maintain herd reproductive performance.
description: American Association of Bovine Practitioners Proceedings of the Annual Conference, 2018 Recent Graduate Proceedings
Structure and structure-preserving algorithms for plasma physics
Creators: name: Morrison, P. J.
Publisher: name: arXiv
Year: 2016
Subjects: subject: Plasma Physics (physics.plasm-ph)
subject: Mathematical Physics (math-ph)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: Hamiltonian and action principle (HAP) formulations of plasma physics are reviewed for the purpose of explaining structure preserving numerical algorithms. Geometric structures associated with and emergent from HAP formulations are discussed. These include conservative integration, which exactly conserves invariants, symplectic integration, which exactly preserves the Hamiltonian geometric structure, and other Hamiltonian integration techniques. Basic ideas of variational integration and Poisson integration, which can preserve noncanonical Hamiltonian structure, are discussed. Metriplectic integration, which preserves the structure of conservative systems with both Hamiltonian and dissipative parts, is proposed. Two kinds of simulated annealing, a relaxation technique for obtaining equilibrium states, are reviewed: one that uses metriplectic dynamics, which maximizes an entropy at fixed energy, the other that uses double bracket dynamics, which preserves Casimir invariants. Throughout, applications to plasma systems are emphasized. The paper culminates with a discussion of GEMPIC [Kraus et al., arXiv:1609.03053v1 [math.NA] (2016)], a particle in cell code that incorporates Hamiltonian and geometrical structure preserving properties.
title: Is It Possible To Diminish The Impact Of Unaccounted Time Trends In Age Structured Surveys Catchability On The Results Of Stock Assessment By Means Of Separable Cohort Models?
Creators: name: Vasilyev, Dmitry
Publisher: name: ASC 2003 - X - Theme session
Year: 2024
Subjects: Fisheries and aquaculture
Technologies and data
Pressures, impacts, conservation, and management

description: No abstracts are to be cited without prior reference to the author.Year dependence of catchability coefficients is rather common for many kinds of age-structured surveys. It may originate from increased skill, inevitable changes in equipment and environmental factors. It is not always possible to ascribe these changes by a function of time or other external parameters. In such a case year-to-year variations and unrevealed trends in survey catchability may substantially influence the result of stock assessment by means on a separable cohort model which uses age-structured survey index as a source of information. To exclude this influence it may be reasonable to consider these changes as hindering factor and to use age-structured surveys as source of information about relative changes in the stock age structure. Unfortunately in some cases extraction of the year factor from survey age structured data may make the data not sufficiently informative to produce distinct minima of corresponding component of the overall loss function of the model.
Additional file 6: of GSK3β regulates epithelial-mesenchymal transition and cancer stem cell properties in triple-negative breast cancer
Creators: name: Vijay, Geraldine
name: Zhao, Na
name: Hollander, Petra
name: Toneff, Mike
name: Joseph, Robiya
name: Pietila, Mika
name: Taube, Joseph
name: Sarkar, Tapasree
name: Ramirez-Pena, Esmeralda
name: Werden, Steven
name: Shariati, Maryam
name: Gao, Ruli
name: Sobieski, Mary
name: Stephan, Clifford
name: Sphyris, Nathalie
name: Miura, Noayuki
name: Davies, Peter
name: Chang, Jeffrey
name: Soundararajan, Rama
name: Rosen, Jeffrey
name: Mani, Sendurai
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Computational Biology

description: Figure S4. Genetic suppression of GSK3β expression decreases the sphere-forming potential of mesenchymal-like cells. (A) Cells with mesenchymal properties were treated with the 3 GSK3β inhibitors for 24 h. Following the treatment, the cells were plated for mammosphere assays and (B) a growth curve was generated to ensure that decrease in proliferation is not the reason for the decreased sphere forming ability of these cells. (C) Knockdown of GSK3β decreases the mammosphere forming capability of the mesenchymal cells. HMLE Snail, HMLE Twist, and Sum159 cells were stably transfected with GSK3β shRNA and grown in ultra-low attachments plates in mammosphere media for 10 days. (D). Mouse embryonic fibroblasts (MEFs) in which GSK3β were knocked out were grown in ultra-low attachment plates in mammosphere media for 10 days. Mouse embryonic fibroblasts (MEFs) in which GSK3β was knocked out were grown for 4 days, and growth was assessed on days 2, 3, and 4. Knocking out of GSK3β in MEFs reduces the sphere forming potential of the MEFs. The cells with mesenchymal properties were treated with 3 GSK3β inhibitors and the change in the CD24/44 profile of these cells following treatment was quantified and represented as a (E) table and (F) bar graph. (PDF 153 kb)
CaRCC Research Computing and Data Career Arcs 2021 Survey
Creators: name: Pazouki, Arman
name: Schmitz, Patrick
name: Kee, Kerk
name: Chaudhry, Shafaq
name: Hillery, Elizabett
name: Carriere, Laura
name: Porter, Sam
name: Chadalapaka, Sarvani
name: Smith, Preston
name: Leake, Elizabeth
Publisher: name: Zenodo
Year: 2022
Subjects: Research Computing and Data
RCD
RCD Professionals
CaRCC
Career Arcs

description: This document contains a survey that was used by Campus Research Computing Consortium (CaRCC) Career Arcs working group to study the career arcs for Research Computing and Data (RCD) professionals employed in Research Computing and Data positions in the United States at the time of the survey or before. The purpose of the study is to identify key factors that influence career decisions in RCD. This survey gathered responses from over 200 respondents at institutions across the US.
The $n_f^2$ contributions to fermionic four-loop form factors
Creators: name: Lee, Roman N.
name: Smirnov, Alexander V.
name: Smirnov, Vladimir A.
name: Steinhauser, Matthias
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We compute the four-loop contributions to the photon quark and Higgs quark form factors involving two closed fermion loops. We present analytical results for all non-planar master integrals of the two non-planar integral families which enter our calculation.
description: 26 pages
Additional file 4: of Routine blood tests are associated with short term mortality and can improve emergency department triage: a cohort study of >12,000 patients
Creators: name: Kristensen, Michael
name: Iversen, Anne
name: Gerds, Thomas
name: Østervig, Rebecca
name: Linnet, Jakob
name: Barfod, Charlotte
name: Lange, Kai
name: Sölétormos, György
name: Forberg, Jakob
name: Eugen-Olsen, Jesper
name: Rasmussen, Lars
name: Schou, Morten
name: Køber, Lars
name: Iversen, Kasper
Publisher: name: figshare
Year: 2017
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Cohort Characteristics. Characteristics of the primary cohort (2010) and the validation cohort (2013). (DOCX 17 kb)
A hybrid primal heuristic for Robust Multiperiod Network Design
Creators: name: D'Andreagiovanni, Fabio
name: Krolikowski, Jonatan
name: Pulaj, Jonad
Publisher: name: arXiv
Year: 2017
Subjects: subject: Optimization and Control (math.OC)
subject: Data Structures and Algorithms (cs.DS)
subject: Neural and Evolutionary Computing (cs.NE)
subject: Networking and Internet Architecture (cs.NI)
subject: FOS: Mathematics
subject: FOS: Computer and information sciences

description: We investigate the Robust Multiperiod Network Design Problem, a generalization of the classical Capacitated Network Design Problem that additionally considers multiple design periods and provides solutions protected against traffic uncertainty. Given the intrinsic difficulty of the problem, which proves challenging even for state-of-the art commercial solvers, we propose a hybrid primal heuristic based on the combination of ant colony optimization and an exact large neighborhood search. Computational experiments on a set of realistic instances from the SNDlib show that our heuristic can find solutions of extremely good quality with low optimality gap.
description: This is the authors' final version of the paper published in: Esparcia-Alc\'azar A., Mora A. (eds), EvoApplications 2014: Applications of Evolutionary Computation, LNCS 8602, pp. 15-26, 2014. DOI: 10.1007/978-3-662-45523-4\_2. The final publication is available at Springer via http://dx.doi.org/10.1007/978-3-662-45523-4_2. arXiv admin note: substantial text overlap with arXiv:1410.5850
Trace minerals and the immune system
Creators: name: Havenga, Lourens J.
Publisher: name: American Association of Bovine Practitioners  Proceedings of the Annual Conference
Year: 2018

description: The functions of trace mineral-dependent enzymes impact every aspect of the complex immune response. This includes, but is not limited to, the chemical components (interferon and interleukin), the innate cellular functionality (neutrophil and macrophage) as well as the acquired immune response (T-cell and B-cell functionality). Disease management relies significantly on the use of vaccines and more recently on non-specific immune modulators. Understanding the role of the different minerals will enable practitioners to identify when and how trace mineral supplementation may be required for optimal immune function.
description: American Association of Bovine Practitioners Proceedings of the Annual Conference, 2018 Recent Graduate Proceedings
title: Incorporating Predation Interactions In A Statistical Catch At Age Model For A Simplified Predator-Prey System In The Eastern Bering Sea
Creators: name: Jurado-Molina, Jesús
name: Livingston, Patricia A.
Publisher: name: ASC 2003 - X - Theme session
Year: 2024
Subjects: Fisheries and aquaculture
Technologies and data
Pressures, impacts, conservation, and management

description: No abstracts are to be cited without prior reference to the author.The most common methods used in stock assessment are VPA and the statistical catch-at-age methods, which permit the reconstruction of the numbers-at-age of exploited stocks and provide estimates of mortality rates for management advice. The difference between these models is the statistical assumptions allowing the fitting of parameters by considering how errors enter into these models and using several data sources for the estimation procedure. Fishery managers are increasingly asked to consider multispecies interactions in their decisions because there is an increasing tendency to recognize that fish populations are not isolated. One option to achieve this goal is the MSVPA that incorporates predation into the virtual population; however, it lacks statistical assumptions. In this work we use a two-species system to incorporate the predation equations from MSVPA into a multispecies statistical catch-at-age model (MSM). Results suggested multispecies statistical model reproduced most of the suitabilities estimated by MSVPA; however, MSM provided a measure of the uncertainty associated with these parameters. MSM is an important step for providing advice to fisheries managers because it incorporates the current tools used in stock assessment such as Bayesian methods and analysis of decision in a multispecies context, helping to establish useful scenarios for management in the eastern Bering Sea.
title: The Influence On Stock Assessment Advice Of Sampling Error In Research Survey And International Market Sampling Data For North Sea Cod (Gadus Morhua L.) And Plaice (Pleuronectes Platessa L.)
Creators: name: Kell, L.T.
name: Cotter, A.J.R.
name: Van Keeken, O.
name: Pastoors, M.
name: O’brien, C.M.
name: Piet, G. J.
name: Rackham, B. D.
Publisher: name: ASC 2003 - X - Theme session
Year: 2024
Subjects: Fisheries and aquaculture
Technologies and data
Pressures, impacts, conservation, and management

description: No abstracts are to be cited without prior reference to the author.The influence of sampling error from both commercial and research vessel data on scientific advice are evaluated and compared for North Sea cod (Gadus morhua L.) and plaice (Pleuronectes platessa L.). Errors in the estimated numbers-at-age of the landed catch, obtained from market sampling, were investigated under the EU-funded study (EMAS - CFP Study Project 98/075) and previously reported (ICES 2001 CM/P:13 and ICES CM 2001/P:14); whilst sampling error in the indices of numbersat- age obtained from research vessel surveys were investigated under the EU-funded study (EVARES - FISH/2001/02 - Lot 1). The results of these studies were combined with XSA (Extended Survivors Analysis) stock assessment method through bootstrapping to evaluate the impact of sampling error on quantities used to provide scientific advice. These include estimates of current and historic SSB, recruitment and fishing mortality as well as biological reference points for fishing mortality, F0.1, (a proxy for FMSY) and biomass B* (a level below which recruitment is impaired). In addition a projection based upon the recommended precautionary level of fishing mortality, FPA, was performed to evaluate the sensitivity of estimates of the projected biomass and catch levels.
Design of management and preventive strategies for neonatal calf diarrhea in beef systems
Creators: name: Grotelueschen, Dale M.
Publisher: name: American Association of Bovine Practitioners  Proceedings of the Annual Conference
Year: 2018

description: Neonatal calf diarrhea outbreaks in beef herds are a common clinical entity that involves a complex association of factors. Calf treatments, diagnostic investigations, and prevention are frequent outcomes of involvement of veterinary practitioners. Preventive interventions to address immediate and future outbreaks are often management related and more difficult to implement. Evidence-based recommendations can be accomplished by addressing research derived risk factors that are known to impact likelihood for outbreaks. The Sandhills Calving System is 1 intervention option. Implementation of preventive strategies requires knowledge that includes, but is not limited to, client priorities, decision making, and risk tolerance. Client communication and understanding are keys to implementation. Thorough understanding of the system, including potential impacts of any interventions, is very important to insure successful implementation of preventive strategies.
description: American Association of Bovine Practitioners Proceedings of the Annual Conference, 2018 Recent Graduate Proceedings
Contact of a spherical probe with a stretched rubber substrate
Creators: name: Fretigny, Christian
name: Chateauminois, Antoine
Publisher: name: arXiv
Year: 2017
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We report on a theoretical and experimental investigation of the normal contact of stretched neo-Hookean substrates with rigid spherical probes. Starting from a published formulation of surface Green's function for incremental displacements on a pre-stretched, neo-Hookean, substrate (L.H. Lee \textit{J. Mech. Phys. Sol.} \textbf{56} (2008) 2957-2971), a model is derived for both adhesive and non-adhesive contacts. The shape of the elliptical contact area together with the contact load and the contact stiffness are predicted as a function of the in-plane stretch ratios $λ_x$ and $λ_y$ of the substrate. The validity of this model is assessed by contact experiments carried out using an uniaxally stretched silicone rubber. for stretch ratio below about 1.25, a good agreement is observed between theory and experiments. Above this threshold, some deviations from the theoretical prediction are induced as a result of the departure of the mechanical response of the silicone rubber from the neo-Hokeean description embedded in the model.
Additional file 4: Table S4. of High resolution chromosomal microarray analysis in paediatric obsessive-compulsive disorder
Creators: name: Grünblatt, Edna
name: Oneda, Beatrice
name: Ekici, Arif
name: Ball, Juliane
name: Geissler, Julia
name: Uebe, Steffen
name: Romanos, Marcel
name: Rauch, Anita
name: Walitza, Susanne
Publisher: name: figshare
Year: 2017
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: (a) CNV burden analysis results from PLINK. The p-values shown are for the GCNT test statistic from PLINK’s cnv-enrichment-test algorithm, applied to the particular gene list versus the entire genome. Although Brain expressed and ID genes resulted in p values below 0.05, only the brain-expressed genes list remains significantly enriched in CNVs after correction for multiple testing (6 tests). (b) CNV burden analysis results from PLINK. The Gene List used. (PDF 1722 kb)
SU(4)-holonomy via the left-invariant hypo and Hitchin flow
Creators: name: Freibert, Marco
Publisher: name: arXiv
Year: 2016
Subjects: subject: Differential Geometry (math.DG)
subject: FOS: Mathematics
subject: 53C29, 53C44 (Primary) 53C10, 53C25, 53C30 (Secondary)

description: The Hitchin flow constructs eight-dimensional Riemannian manifolds (M,g) with holonomy in Spin(7) starting with a cocalibrated G_2-structure on a seven-dimensional manifold. As Sp(2)\subseteq SU(4)\subseteq Spin(7), one may also obtain Calabi-Yau fourfolds or hyperKähler manifolds via the Hitchin flow. In this paper, we show that the Hitchin flow on almost Abelian Lie algebras and on Lie algebras with one-dimensional commutator always yields Riemannian metrics with Hol(g)\subseteq SU(4) but Hol(g)\neq Sp(2). We investigate when we actually get Hol(g)=SU(4) and obtain so many new explicit examples of Calabi-Yau fourfolds. The results rely on the connection between cocalibrated G_2-structures and hypo SU(3)-structures and between the Hitchin and the hypo flow and on a systematic study of hypo SU(3)-structures and the hypo flow on Lie algebras. This study gives us many other interesting results: We obtain full classifications of hypo SU(3)-structures with particular intrinsic torsion on Lie algebras. Moreover, we can exclude reducible or Sp(2)-holonomy or do get Hol(g)=SU(4) for the Riemannian manifolds obtained by the hypo flow with initial values in some other intrinsic torsion classes.
description: 34 pages
title: Limiting Inter-Annual Variation In Total Allowable Catch Strategies. An Application To Ices Flatfish Stocks
Creators: name: Kell, L.T.
name: Pastoors, M.
name: Scott, R.
name: Smith, M.
name: F
name: Beek, Van
name: O'brien, C. M.
name: Pilling, G.
Publisher: name: ASC 2003 - X - Theme session
Year: 2024
Subjects: Fisheries and aquaculture
Technologies and data
Pressures, impacts, conservation, and management

description: No abstracts are to be cited without prior reference to the author.Management strategies that stabilise catch levels, defined by specific target fishing mortalities, and limits on annual fluctuations in the total allowable catch (TAC) for ICES flatfish stocks, were evaluated using a simulation framework. The framework modelled both the ‘real’ and observed systems, the interactions between system components and our ability to observe, monitor, assess and control them. Candidate management strategies were evaluated in terms of the level of risk that they imposed on the stock (measured as the probability of spawning stock biomass falling below the biomass limit reference level for the stock), the probability of achieving a target biomass level and the cumulative yield. The power of the assessment for detecting the current biomass level and the probability that biomass was above the limit reference point were also evaluated
Cow-calf chute-side data collection and reports
Creators: name: Bolinger, John D.
Publisher: name: American Association of Bovine Practitioners  Proceedings of the Annual Conference
Year: 2018

description: Management event reports can be used to help cowcalf producers make decisions at key points throughout the year. These reports can be created chute-side using an iPad and allow the veterinarian to provide instant information to discuss with producers. This presentation details how tablets are used during farm visits to collect health and performance data, and to generate reports for the producer before leaving the farm.
description: American Association of Bovine Practitioners Proceedings of the Annual Conference, 2018 Recent Graduate Proceedings
Additional file 7: of GSK3Î˛ regulates epithelial-mesenchymal transition and cancer stem cell properties in triple-negative breast cancer
Creators: name: Vijay, Geraldine
name: Zhao, Na
name: Hollander, Petra
name: Toneff, Mike
name: Joseph, Robiya
name: Pietila, Mika
name: Taube, Joseph
name: Sarkar, Tapasree
name: Ramirez-Pena, Esmeralda
name: Werden, Steven
name: Shariati, Maryam
name: Gao, Ruli
name: Sobieski, Mary
name: Stephan, Clifford
name: Sphyris, Nathalie
name: Miura, Noayuki
name: Davies, Peter
name: Chang, Jeffrey
name: Soundararajan, Rama
name: Rosen, Jeffrey
name: Mani, Sendurai
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Figure S5. HMLE-vector and HMLE-Snail cells were treated with a dose range of the tested inhibitors, and viability was assessed by MTT assay. Of the drugs that were shortlisted from the screen, BIO was one of the drugs that could selectively inhibit HMLE-Snail cells with mesenchymal phenotype more efficiently as compared to HMLE-vector cells with epithelial phenotype. (PDF 133â kb)
On Finsler surfaces of constant flag curvature with a Killing field
Creators: name: Bryant, R. L.
name: Huang, L.
name: Mo, X.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Differential Geometry (math.DG)
subject: General Topology (math.GN)
subject: FOS: Mathematics

description: We study two-dimensional Finsler metrics of constant flag curvature and show that such Finsler metrics that admit a Killing field can be written in a normal form that depends on two arbitrary functions of one variable. Furthermore, we find an approach to calculate these functions for spherically symmetric Finsler surfaces of constant flag curvature. In particular, we obtain the normal form of the Funk metric on the unit disk D^2.
Additional file 3: of Routine blood tests are associated with short term mortality and can improve emergency department triage: a cohort study of >12,000 patients
Creators: name: Kristensen, Michael
name: Iversen, Anne
name: Gerds, Thomas
name: Østervig, Rebecca
name: Linnet, Jakob
name: Barfod, Charlotte
name: Lange, Kai
name: Sölétormos, György
name: Forberg, Jakob
name: Eugen-Olsen, Jesper
name: Rasmussen, Lars
name: Schou, Morten
name: Køber, Lars
name: Iversen, Kasper
Publisher: name: figshare
Year: 2017
Subjects: subject: Developmental Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Primary Cohort. Characteristics of included and excluded patients admitted to the emergency department in primary cohort (2010). (DOCX 16 kb)
title: Limiting Inter-Annual Variation In Total Allowable Catch Strategies. An Application To Ices Roundfish Stocks
Creators: name: Kell, L.T.
name: Pilling, G.
name: Kirkwood, G.
name: Pastoors, M.
name: Abaunza, P.
name: Aps, R.
name: Biseau, A.
name: Korsbrekke, K.
name: Kunzlik, P.
name: Laurec, A.
name: Mesnil, B.
name: Needle, C.
name: Roel, B.
name: Ulrich., C.
Publisher: name: ASC 2003 - X - Theme session
Year: 2024
Subjects: Fisheries and aquaculture
Technologies and data
Pressures, impacts, conservation, and management

description: No abstracts are to be cited without prior reference to the author.This study evaluated through simulation management strategy that stabilise catch levels by setting bounds on the inter-annual variability in Total Allowable Catches (TACs). An integrated modelling approach was used, which modelled both the ‘real’ and observed systems and the interactions between all system components. The modelling framework therefore allowed evaluation of the robustness of candidate management strategies to both the intrinsic properties of the systems, and the ability to observe, monitor, assess and control them. Strategies were evaluated in terms of level of risk (measured as the probability of spawning stock biomass falling below the biomass limit reference level for the stock) and cumulative yield.
Minimal inequalities for an infinite relaxation of integer programs
Creators: name: Basu, Amitabh
name: Conforti, Michele
name: Cornuejols, Gerard
name: Zambelli, Giacomo
Publisher: name: arXiv
Year: 2017
Subjects: subject: Optimization and Control (math.OC)
subject: FOS: Mathematics
subject: 90C11, 52C07

description: We show that maximal $S$-free convex sets are polyhedra when $S$ is the set of integral points in some rational polyhedron of $\mathbb{R}^n$. This result extends a theorem of Lovász characterizing maximal lattice-free convex sets. Our theorem has implications in integer programming. In particular, we show that maximal $S$-free convex sets are in one-to-one correspondence with minimal inequalities.
Morse simulation of the Global Monopole equation in flat spacetime
Creators: name: Mazharimousavi, S. Habib
name: Halilsoy, M.
Publisher: name: arXiv
Year: 2017
Subjects: subject: General Physics (physics.gen-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We show that a Morse type potential simulates an analytic solution for the highly non-linear global monopole field equation in three and higher dimensional flat spacetimes. Owing to the fact that in the flat space limit the similar equation remains intact we wish to borrow the curved space terminology of global monopole also in flat spacetime. This may provide a compelling example that can be used effectively in different non-linear theories such as flat space $ϕ^{4},$ as well as in curved spacetimes.
description: 5 pages, 5 figures
title: Nea Cod Dynamic Simulation To Test Various Management Scenarios
Creators: name: Bulgakova, Tatiana
Publisher: name: ASC 2003 - X - Theme session
Year: 2024
Subjects: Fisheries and aquaculture
Technologies and data
Pressures, impacts, conservation, and management

description: No abstracts are to be cited without prior reference to the author.The simulation model in the form of EXCEL spreadsheet described NEA cod dynamics since 1980 up to 2005 using mainly the same input parameters as used in the AFWG-2002 run with cannibalism (weight-at age data in the catch and in the stock, maturity ogive, natural mortality). The rest input parameters of the simulation model such as variable by years selection pattern, starting stock abundance by ages at 1980 and in some cases Fref =Fbar(5-10) or recruitment abundance at age 3 R(3) were the output information of the same ASWG run. This model allows to consider hypothetical development of cod population dynamics by incorporating PA management scheme since any year. At that, simulated stock develops differently from the real variant, therefore the recruitment abundance for these years was estimated according to elaborated earlier stock-recruitment model (Borisov and Bulgakova, WD#2 to AFWG-2002). This model took into account for recruitment assessment not only spawning stock biomass and cannibalism (as traditional Ricker's model) but also two additional variable by years indexes calculated for each year class: * the first index is equal to population fecundity divided by SSB (this index reflects variable spawning stock age structure), * the second index of steady Atlantic water inflow which is equal to number of months in the year of a year class birth with positive temperature anomalies. This model allows forecasting the recruitment at age 3 in advance for 2 years. The management scheme according to precautionary approach with the reference points values proposed at SGBRP-2003 and with other values of these points and other schemes were considered too. The model simulates and then compares various scenarios of harvest control rule and as result arrives at different population dynamics. For example the performed simulations using various Fpa values sent a challenge in a practicability of the choice so low value for Fpa as 0.4 for the cod stock.
New fitting formula for cosmic non-linear density distribution
Creators: name: Shin, Jihye
name: Kim, Juhan
name: Pichon, Christophe
name: Jeong, Donghui
name: Park, Changbom
Publisher: name: arXiv
Year: 2017
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We have measured the probability distribution function (PDF) of cosmic matter density field from a suite of N-body simulations. We propose the generalized normal distribution of version 2 (Nv2) as an alternative fitting formula to the well-known log-normal distribution. We find that Nv2 provides significantly better fit than the log-normal distribution for all smoothing radii (2, 5, 10, 25 [Mpc/h]) that we studied. The improvement is substantial in the underdense regions. The development of non- Gaissianities in the cosmic matter density field is captured by continuous evolution of the skewness and shifts parameters of the Nv2 distribution. We present the redshift evolution of these parameters for aforementioned smoothing radii and various background cosmology models. All the PDFs measured from large and high-resolution N-body simulations that we use in this study can be obtained from a Web site at https://astro.kias.re.kr/jhshin.
description: Accepted for publication in ApJ
Additional file 6 of Exosome-mediated lncRNA AFAP1-AS1 promotes trastuzumab resistance through binding with AUF1 and activating ERBB2 translation
Creators: name: Mingli Han
name: Yuanting Gu
name: Pengwei Lu
name: Jingyi Li
name: Cao, Hui
name: Xiangke Li
name: Xueke Qian
name: Yu, Chao
name: Yunqing Yang
name: Yang, Xue
name: Han, Na
name: Dongwei Dou
name: Jianguo Hu
name: Huaying Dong
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: 60506 Virology

description: Additional file 6: Figure S2 HER-2 protein was upregulated in trastuzumab-resistant cells. (a) Quantification of fluorescence intensity of Fig. 6a. (b-d) Flow cytometry analysis with anti-ERBB2 antibody (1:1000, ab31889, Abcam) showed a significantly elevated HER-2-positive cells in trastuzumab-resistant cells compared to sensitive cells, *P
Additional file 1: Table S1. of Fast food diet-induced non-alcoholic fatty liver disease exerts early protective effect against acetaminophen intoxication in mice
Creators: name: Kim, Tae
name: Dahee Choi
name: Kim, Joo
name: Lee, Jeong
name: Seung-Hoi Koo
Publisher: name: figshare
Year: 2017
Subjects: subject: Medicine
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Computational Biology

description: Compositions of the NC and FF diets. FF composed of more fat, cholesterol, carbohydrate and high fructose than NC. NC, normal chow; FF, fast food. Table S2. Sequences of sense and antisense primers used in the present study. (DOCX 14 kb)
Isn't a number and a URL enough? Why PIDs matter and technical solutions alone are not sufficient
Creators: name: Schrader, Antonia C.
name: Hagemann-Wilholt, Stephanie
name: Czerniak, Andreas
Publisher: name: Zenodo
Year: 2023
Subjects: subject: Persistent Identifier
subject: Research Data Management
subject: Metadata
subject: Base Service
subject: NFDI
subject: Open Science
subject: 020

description: In the presentation, we introduce the two projects PID4NFDI and PID Network Germany that deal with PIDs at the national level, present some initial findings and highlight their benefit for NFDI. PIDs are used and needed along the entire lifecycle of research data: from enabling to connecting. However, a particular focus for the presentation will be laid on harmonising and connecting.
Additional file 7 of Exosome-mediated lncRNA AFAP1-AS1 promotes trastuzumab resistance through binding with AUF1 and activating ERBB2 translation
Creators: name: Mingli Han
name: Yuanting Gu
name: Pengwei Lu
name: Jingyi Li
name: Cao, Hui
name: Xiangke Li
name: Xueke Qian
name: Yu, Chao
name: Yunqing Yang
name: Yang, Xue
name: Han, Na
name: Dongwei Dou
name: Jianguo Hu
name: Huaying Dong
Publisher: name: figshare
Year: 2020
Subjects: Biochemistry
Space Science
Cell Biology
Molecular Biology
Pharmacology
Developmental Biology
Cancer
Hematology

description: Additional file 7: Figure S3 Nuclear fraction experiment and qRT-PCR experiments were performed to detect the relative distribution of AFAP1-AS1 in nuclear and cytoplasm of SKBR-3 and BT474 cells.
The Origin of Adaptation, Effective Procedures, and the Reality of Mechanism
Creators: name: Greif, Hajo
name: Šekrst, Kristina
Publisher: name: Zenodo
Year: 2024
Subjects: subject: Philosophy
subject: FOS: Philosophy, ethics and religion

description: We explore the conceptions of 'mechanism' in W. Ross Ashby's machine model of adaptive organization vis-á-vis Alan M. Turing's contemporaneous notion of mechanism as an 'effective procedure' of calculating functions. Although taking their cues from the same concept of mechanism in the history of philosophy, and although developing in a shared intellectual context, there are relevant differences to consider. First, the referent of 'mechanism' is the model of computation in Turing and the system under investigation in Ashby, who sought to identify a shared kind of mechanism in various kinds of systems. Second, the respective conceptions of mechanisms account for differential degrees in the models' capacity of generalization, depending on their divergent metaphysical premises and the extent to which the mechanisms in question shall count as computational.
title: The Catchability In A Spatial Context : A Simulation Exercise
Creators: name: Bez, Nicolas
Publisher: name: ASC 2003 - X - Theme session
Year: 2024
Subjects: Fisheries and aquaculture
Technologies and data
Pressures, impacts, conservation, and management

description: No abstracts are to be cited without prior reference to the author.The catchability (q) links the catch per unit effort and the biomass of a given stock. Assuming spatial distributions of fish and fishing effort are uniform in space, fishing mortality is also proportional to the fishing effort. Departure from these underlying assumptions reduces the use of this latter relationship. One solution often used in practice is to consider small regions where the spatial distributions can be considered uniforms. The objective of this study is to analyse the impact of different spatial distributions of fishermen on the catchability. Fish density is modelled by a georeferenced variable. This continuous model suits well demersal species which are distributed everywhere. For pelagic species a point process would be prefered but the catchability gets then a more complex expression. Fishing effort is randomly allocated in space according to a probability map (the map of the fishing intensity). Fishing efficency is assumed to be 1, i.e. all fish in the filtered surface are caught. In a spatial context, analytical solutions for the catchability are not available when fishing intensity is not uniform. So the mean of a large number of simulations is used to estimate it. Several types of probability distributions are considered from spatially homogeneous to spatially heterogeneous. Catchability increases with the heterogeneity of the fishing effort distribution, being maximum when both the fish and the fishermen are highly heterogeneous in space. In practice, when distributions are highly heterogeneous, the catchability might be significantly under-estimated if the distributions are assumed uniformed.
title: Sensitivity Of The Current Ica Assessment Of Western Mackerel And Short Term Prediction To The Sampling Error In The Egg Survey Parameters
Creators: name: Simmonds, E J
name: Beare, D
name: Reid, D G
Publisher: name: ASC 2003 - X - Theme session
Year: 2024
Subjects: Fisheries and aquaculture
Technologies and data
Pressures, impacts, conservation, and management

description: No abstracts are to be cited without prior reference to the author.The assessment and deterministic short term projection of the North East Atlantic mackerel stock is based on an integrated catch at age model (ICA) assessment tuned with an egg survey derived biomass estimate. The egg survey biomass estimate is based on a calculation of the total annual egg production, converted to biomass using realised female fecundity. Currently western and southern spawning components are assessed together for management purposes. Ideally the present study would be best conducted on the combined stock but was restricted to the western component where there is a longer time series of egg survey data. The paper examines variability in the parameters estimated from the survey and their influence on both the assessment and predicted Total Allowable Catch (TAC) is calculated.