Additional file 1 of Novel insights into the rhizosphere and seawater microbiome of Zostera marina in diverse mariculture zones
Creators: name: Sun, Hao
name: Wang, Tianyu
name: Liu, Shuai
name: Tang, Xiaoyu
name: Sun, Jie
name: Liu, Xuerui
name: Zhao, Ye
name: Shen, Pingping
name: Zhang, Yanying
Publisher: name: figshare
Year: 2024
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Ecology

description: Additional file 1: Supplementary materials. Results of bacterial, eukaryotic, and fungal community structure, biological functions and metabolism in the seawater and rhizosphere sediment of Z. marina from natural and mariculture zones. Fig. S1. The four sampling zones. Fig. S2. The difference of α diversity in seawater (A, B and C) and rhizosphere sediment (D, E and F) samples from the N, SJ, SC and SR zones. Fig. S3. The composition of the metagenomic communities at domain level. Fig. S4. The composition of bacterial, eukaryotic, and fungal communities in seawater (A, B and C) and rhizosphere sediment (D, E and F) samples from the N, SJ, SC and SR zones at genus level. Fig. S5. The phylogenomic tree and numbers of MAGs assembled from seawater and rhizosphere sediment samples in the N, SJ, SC and SR zones. Fig. S6. The co-occurrence network of eukaryotic community in seawater (A, B, C and D) and rhizosphere sediment (E, F, G and H) samples from the N, SJ, SC and SR zones. Fig. S7. The co-occurrence network of fungal communities in seawater (A, B, C and D) and rhizosphere sediment (E, F, G and H) samples from the N, SJ, SC and SR zones. Fig. S8. The nonmetric multidimensional scaling (NMDS) analysis of bacterial (A), eukaryotic (B) and fungal (C) communities at ASV level based on the Bray-Curtis. Fig. S9. The canonical correspondence analysis (CCA) of bacterial, eukaryotic, and fungal communities in seawater (A, B and C) and rhizosphere sediment (D, E and F) samples from the N, SJ, SC and SR zones at ASV level. Fig. S10. The variation partition analysis (VPA) of bacterial, eukaryotic, and fungal communities in seawater (A, B and C) and rhizosphere sediment (D, E and F) samples from the N, SJ, SC and SR zones at ASV level. Fig. S11. The Kyoto Encyclopedia of Genes and Genomes (KEGG) functions of the metagenome in seawater (A) and rhizosphere sediment (B) samples and their difference (C). Fig. S12. The Kyoto Encyclopedia of Genes and Genomes (KEGG) functions in bacterial, eukaryotic, archaeal and viral communities in seawater and rhizosphere sediment samples from the N, SJ, SC and SR zones. Fig. S13. The nitrogen metabolism in seawater and rhizosphere sediment samples from the N, SJ, SC and SR zones. Fig. S14. The sulfur metabolism in seawater and rhizosphere sediment samples from the N, SJ, SC and SR zones. Fig. S15. The sulfur metabolism in seawater (A) and rhizosphere sediment (B) samples from the N, SJ, SC and SR zones. Fig. S16. The antibiotic class of antibiotic resistance genes (ARGs) in seawater (A) and rhizosphere sediment (B) samples from the N, SJ, SC and SR zones. Fig. S17. The LEfSe analysis for the antibiotic class of antibiotic resistance genes (ARGs) in seawater (A) and rhizosphere sediment (B) samples from the N, SJ, SC and SR zones. Table S1. Primers and amplification conditions for the high-throughput sequencing of bacteria, eukaryota and fungi. Table S2. The qualities of metagenomic assemblies. Table S3. The environmental parameters of the seawater samples from the N, SJ, SC and SR zones. Table S4. The environmental parameters of the rhizosphere sediment samples from the N, SJ, SC and SR zones. Table S5. The ASVs numbers, Chao 1, Shannon and Coverage indices.