cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 4: of Consideration of sex and gender in Cochrane reviews of interventions for preventing healthcare-associated infections: a methodology study
Creators: name: López-Alcalde, Jesús
name: Stallings, Elena
name: Nunes, Sheila Cabir
name: Chávez, Abelardo Fernández
name: Daheron, Mathilde
name: Cosp, Xavier Bonfill
name: Zamora, Javier
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: FOS: Biological sciences
subject: Computational Biology

description: SGAT-SR template and guidance. (DOCX 30 kb)
Shapes from Echoes: Uniqueness from Point-to-Plane Distance Matrices
Creators: name: Krekovic, Miranda
name: Dokmanic, Ivan
name: Vetterli, Martin
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computational Geometry (cs.CG)
subject: Sound (cs.SD)
subject: Audio and Speech Processing (eess.AS)
subject: Signal Processing (eess.SP)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: We study the problem of localizing a configuration of points and planes from the collection of point-to-plane distances. This problem models simultaneous localization and mapping from acoustic echoes as well as the notable "structure from sound" approach to microphone localization with unknown sources. In our earlier work we proposed computational methods for localization from point-to-plane distances and noted that such localization suffers from various ambiguities beyond the usual rigid body motions; in this paper we provide a complete characterization of uniqueness. We enumerate equivalence classes of configurations which lead to the same distance measurements as a function of the number of planes and points, and algebraically characterize the related transformations in both 2D and 3D. Here we only discuss uniqueness; computational tools and heuristics for practical localization from point-to-plane distances using sound will be addressed in a companion paper.
description: 13 pages, 13 figures
Additional file 5: of Study protocol of a pragmatic randomized controlled trial incorporated into the Group Lifestyle Balanceâ ˘ program: the nutrigenomics, overweight/obesity and weight management trial (the NOW trial)
Creators: name: Horne, Justine
name: Gilliland, Jason
name: OâConnor, Colleen
name: Seabrook, Jamie
name: Hannaberg, Peter
name: Madill, Janet
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology

description: Quality Assessment Tool for Genetic Interventions [11]. Legend for Additional file 5. *CD, cannot determine; NR, not reported; NA, not applicable (DOCX 13 kb)
Family-group names of fossil fishes
Creators: name: Laan, Richard Van Der
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy

description: †Halecopsidae Casier 1946: 114 (family)
 † Halecopsis Woodward 1901 [family name sometimes seen as †Halecopsididae]
 †Histiothrissinae Arambourg 1955: 40 (subfamily) † Histiothrissa Woodward 1901
description: Published as part of Laan, Richard Van Der, 2018, Family-group names of fossil fishes, pp. 1-167 in European Journal of Taxonomy 466 on page 46, DOI: 10.5852/ejt.2018.466, http://zenodo.org/record/5557557
Linear response of vibrated granular systems to sudden changes in the vibration intensity
Creators: name: Brey, J. Javier
name: Prados, A.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: The short-term memory effects recently observed in vibration-induced compaction of granular materials are studied. It is shown that they can be explained by means of quite plausible hypothesis about the mesoscopic description of the evolution of the system. The existence of a critical time separating regimes of ``anomalous'' and ``normal'' responses is predicted. A simple model fitting into the general framework is analyzed in the detail. The relationship between this work and previous studies is discussed.
description: 10 pages, 6 figures; fixed errata, updtated references
Diffusion of Pt dimers on Pt(111)
Creators: name: Boisvert, Ghyslain
name: Lewis, Laurent J.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We report the results of a density-functional study of the diffusion of Pt dimers on the (111) surface of Pt. The calculated activation energy of 0.37 eV is in {\em exact} agreement with the recent experiment of Kyuno {\em et al.} \protect{[}Surf. Sci. {\bf 397}, 191 (1998)\protect{]}. Our calculations establish that the dimers are mobile at temperatures of interest for adatom diffusion, and thus contribute to mass transport. They also indicate that the diffusion path for dimers consists of a sequence of one-atom and (concerted) two-atom jumps.
description: Pour pages postscript formatted, including one figure; submitted to Physical Review B; other papers of interest can be found at url http://www.centrcn.umontreal.ca/~lewis
Additional file 3 of Decoding the key compounds and mechanism of Shashen Maidong decoction in the treatment of lung cancer
Creators: name: Cai, Jieqi
name: Chen, Yupeng
name: Wang, Kexin
name: Li, Yi
name: Wu, Jie
name: Yu, Hailang
name: Li, Qingping
name: Wu, Qi
name: Meng, Wei
name: Wang, Handuo
name: Lu, Aiping
name: Huang, Mianbo
name: Wei, Genxia
name: Guan, Daogang
Publisher: name: figshare
Year: 2023
Subjects: Biochemistry
Medicine
Cell Biology
Pharmacology
Biotechnology
Biological Sciences not elsewhere classified
Information Systems not elsewhere classified
Cancer

description: Additional file 3: Additional Figure 1. Construct complex components-targets-pathogenic genes-disease (C-T-P-D) network. Green units represent active components of SMD, blue units represent predicted targets of active components and red units represent predicted pathogenic genes of lung cancer. The gray lines indicate the interactions. Additional Figure 2. Full distribution of KFC targets on merged paths. The red units denote the KFC targeted cross-talk genes shared by multiple pathways, and the red dashed line connects them together in different pathways. The blue units indicate that the KFC targeted genes exist only in one pathway. The white units are annotations or nontargeted proteins.
URINATION DISORDERS IN PREGNANT WOMEN
Creators: name: Bazarova, Zarina
Publisher: name: Zenodo
Year: 2024

description: Pregnancy is manifested by a host of changes in a woman’s body, and changes in the urinary system are no exception. But the line between normality and pathology still remains; the vast majority of authors directly or indirectly associate the development of urination disorders in reproductive age with pregnancy and childbirth. Therefore, the purpose of the study was to examine the frequency and nature of urinary disorders during pregnancy to identify significant risk factors. Pregnant women who applied to the multidisciplinary clinic of SamSMU with urinary disorders in 2023 were examined.
Elastic and Proton-Dissociative rho0 Photoproduction at HERA
Creators: name: ZEUS Collaboration
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: Elastic and proton-dissociative rho0 photoproduction (gamma p-->rho0 p,gamma p -->rho0 N,with rho0-->pi+pi-) has been studied in ep interactions at HERA for gamma-p centre-of-mass energies in the range 50pi+pi- p cross section is 11.2\pm 0.1(stat.)+1.1-1.2 (syst.) mub at =71.7 GeV. The t dependence of the cross section can be described by a function of the type Ae^(-b|t|+ct^2) with b=10.9\pm0.3(stat.)+1.0-0.5(syst.)GeV-2 and c=2.7\pm0.9(stat.)+1.9-1.7(syst.) GeV-4. The t dependence has also been studied as a function of W and a value of the slope of the pomeron trajectory 0.23\pm0.15(stat.)+0.10-0.07(syst.)GeV-2 has been deduced. The rho spin density matrix elements r^04_00,r^04_1-1 and Re[r^04_10] have been measured and found to be consistent with expectations based on SCHC. For p-dissociative pi+pi- photoproduction in the rho0 mass range, the distributions of the two-pion invariant mass, W and the polar and azimuthal angles of the pions in the helicity frame are the same within errors as those for the elastic process. The t distribution has been fitted to an exponential function with a slope parameter 5.8\pm0.3(stat.)\pm0.5(syst.)GeV-2. The ratio of the elastic to p-dissociative rho0 photoproduction cross section is 2.0\pm0.2(stat.)\pm0.7(syst.).
description: 42 pages including 17 figures
The plasma-insulator transition of spin-polarized Hydrogen
Creators: name: Xu, Hong
name: Hansen, Jean-Pierre
Publisher: name: arXiv
Year: 2000
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: A mixed classical-quantum density functional theory is used to calculate pair correlations and the free energy of a spin-polarized Hydrogen plasma. A transition to an atomic insulator phase is estimated to occur around r_s=2.5 at T=10^4K, and a pressure $P\approx0.5Mbar$. Spin polarization is imposed to prevent the formation of H_2 molecules.
description: 10 pages, 4 figures
The exact renormalization group in Astrophysics
Creators: name: Gaite, Jose
Publisher: name: arXiv
Year: 2001
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Astrophysics (astro-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The coarse-graining operation in hydrodynamics is equivalent to a change of scale which can be formalized as a renormalization group transformation. In particular, its application to the probability distribution of a self-gravitating fluid yields an "exact renormalization group equation" of Fokker-Planck type. Since the time evolution of that distribution can also be described by a Fokker-Planck equation, we propose a connection between both equations, that is, a connection between scale and time evolution. We finally remark on the essentially non-perturbative nature of astrophysical problems, which suggests that the exact renormalization group is the adequate tool for them.
description: World Scientific style, 6 pages, presented at the 2nd Conference on the Exact RG, Rome 2000
BIC Biomarker Commercialization Flowchart
Creators: name: Von Lode, Piia
Publisher: name: Zenodo
Year: 2020
Subjects: biomarker
Biomarker Commercialization
commercialization
develoment

description: The Flowchart provides a simplified overview of the entire process from discovery to market maturity. Three central aspects are always highlighted: Does the invention address a real clinical need? Is it commercially viable to develop the invention further? Is it feasible - including economic, technical, legal and scheduling considerations - to address this need?
description: BIC BRIDGE is based on project outputs generated during the first stage project BIC – Biomarker Commercialization. The extension stage project is running for 9 months (01.10.2020 – 30.06.2021). The project's budget is EUR 0.76 million and is co-financed by the European Regional Development Fund through the Interreg Baltic Sea Region Programme with EUR 0.58 million.
Family-group names of fossil fishes
Creators: name: Laan, Richard Van Der
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy

description: †Lophosteidae Gross 1969: 17 (family)
 † Lophosteus Pander 1856
description: Published as part of Laan, Richard Van Der, 2018, Family-group names of fossil fishes, pp. 1-167 in European Journal of Taxonomy 466 on page 46, DOI: 10.5852/ejt.2018.466, http://zenodo.org/record/5557557
Interplay between superconductivity and flux phase in the t-J model
Creators: name: Cappelluti, E.
name: Zeyher, R.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We study the phase diagram of the t-J model using a mean field type approximation within the Baym-Kadanoff perturbation expansion for Hubbard $X$-operators. The line separating the normal state from a d-wave flux or bond-order state starts near optimal doping at T=0 and rises quickly with decreasing doping. The transition temperature $T_c$ for d-wave superconductivity increases monotonically in the overdoped region towards optimal doping. Near optimaldoping a strong competition between the two d-wave order parameters sets in leading to a strong suppression of $T_c$ in the underdoped region. Treating for simplicity the flux phase as commensurate the superconducting and flux phases coexist in the underdoped region below $T_c$, whereas a pure flux phase exists above $T_c$ with a pseudo-gap of d-wave symmetry in the excitation spectrum. We also find that incommensurate charge-density-wave ground states due to Coulomb interactions do not modify strongly the above phase diagram near the superconducting phase, at least, as long as the latter exists at all.
description: 15 pages revtex, 8 postscript figures included
Using AI Assistants in Software Development: A Qualitative Study on Security Practices and Concerns
Creators: name: Klemmer, Jan
name: Horstmann, Stefan Albert
name: Patnaik, Nikhil
name: Ludden, Cordelia
name: Jr, Cordell Burton
name: Powers, Carson
name: Massacci, Fabio
name: Rahman, Akond
name: Votipka, Daniel
name: Lipford, Heather Richter
name: Rashid, Awais
name: Naiakshina, Alena
name: Fahl, Sascha
Publisher: name: CISPA
Year: 2025

description: Following the recent release of AI assistants, such as OpenAI’s ChatGPT and GitHub Copilot, the software industry quickly utilized these tools for software development tasks, e.g., generating code or consulting AI for advice. While recent research has demonstrated that AI-generated code can contain security issues, how software professionals balance AI assistant usage and security remains unclear. This paper investigates how software professionals use AI assistants in secure software development, what security implications and considerations arise, and what impact they foresee on secure software development. We conducted 27 semi-structured interviews with software professionals, including software engineers, team leads, and security testers. We also reviewed 190 relevant Reddit posts and comments to gain insights into the current discourse surrounding AI assistants for software development. Our analysis of the interviews and Reddit posts finds that despite many security and quality concerns, participants widely use AI assistants for security-critical tasks, e.g., code generation, threat modeling, and vulnerability detection. Their overall mistrust leads to checking AI suggestions in similar ways to human code, although they expect improvements and, therefore, a heavier use for security tasks in the future. We conclude with recommendations for software professionals to critically check AI suggestions, AI creators to improve suggestion security and capabilities for ethical security tasks, and academic researchers to consider general-purpose AI in software development.
Impacts of Nb on grain refinement in a simulated coarse-grained-heat-affected-zone of ultra-high-strength steels
Creators: name: Wang, Libo
name: Hu, Chengyang
name: Wan, Xiangliang
name: Zhou, Songbo
name: Wei, Ran
name: Zhu, Chengyi
name: Li, Guangqiang
name: Wu, Kaiming
Publisher: name: Taylor & Francis
Year: 2023
Subjects: subject: Biophysics
subject: Space Science
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Hematology
subject: Plant Biology
subject: Computational Biology

description: The impact of Nb contents on grain refinement in a simulated coarse-grained heated-affected zone (CGHAZ) in steels was investigated. The austenite grain grew in multiple directions and then impinged against each other during the α→γ transformation. Subsequently, austenite grains coarsened via the coalescence of small grains and boundary migration. With the increased Nb content, the austenite in CGHAZ became coarser due to the decreased quantity and increased size of Nb precipitates. Furthermore, the austenite decomposed into bainite during the cooling process. Compared with the low-Nb specimen, the crystallographic grain size in CGHAZ of high-Nb specimen is slightly coarser, relating to the coarser prior austenite grain. However, higher Nb content delays the bainite transformation start temperature, leading to multiple variants selection of bainite, increasing the refinement ratio.
Angular distribution coefficients of Z(W) boson produced in $e^+e^-$ collisions at $\sqrt{s}=240$ GeV
Creators: name: Wang, Yu-Dong
name: Wang, Jian-Xiong
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: At designed CEPC, similar to hadron collider, the angular distribution coefficients of decay lepton pair from produced Z(W) boson in $e^+ e^-$ collisions are predicted. Their dependence on $cosθ_Z$($cosθ_W$) are presented in four different polarization frame. Furthermore, the value of angular coefficients in different bins of $cosθ_Z$ are presented in the C-S frame. In comparison to the case at hadron collider, better accurate measurement for $Z(W)$ is expected since there exists less background and $W$ could be reconstructed from it's leptonic decay channel. This work supply a way to precise test the electroweak production mechanism or some effect induced from new physics in the future measurements at the CEPC.
description: 7 pages,9 figures
Remarks on Muon $g-2$ Experiments and Possible CP Violation in $π\toμ\to e$ Decay
Creators: name: Kaplan, Daniel M.
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The first experimental limit on CP violation in pi -> mu -> e decay is extracted from published results of the CERN g-2 experiment.
description: 2 pages, LaTeX, submitted to Phys. Rev. D
Family-group names of fossil fishes
Creators: name: Laan, Richard Van Der
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy

description: †Mesolepidae Young 1866: 316 (family)
 † Mesolepis Young 1866 [family name sometimes seen as †Mesolepididae]
description: Published as part of Laan, Richard Van Der, 2018, Family-group names of fossil fishes, pp. 1-167 in European Journal of Taxonomy 466 on page 46, DOI: 10.5852/ejt.2018.466, http://zenodo.org/record/5557557
The Scattered Disc of HR 8799
Creators: name: Geiler, Fabian
name: Krivov, Alexander
name: Booth, Mark
name: Löhne, Torsten
Publisher: name: arXiv
Year: 2018
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: HR~8799 is a young F0-type star with four directly imaged giant planets and two debris belts, one located exterior and another one interior to the region occupied by the planetary orbits. Having an architecture similar to that of our Solar System, but also revealing dissimilarities such as high masses of planets, a huge radial extent and a high mass of the outer debris belt, HR~8799 is considered to be a benchmark to test formation and evolution models of planetary systems. Here we focus on the outer debris ring and its relation to the planets. We demonstrate that the models of the outer disc, proposed previously to reproduce Herschel observations, are inconsistent with the ALMA data, and vice versa. In an attempt to find a physically motivated model that would agree with both observational sets, we perform collisional simulations. We show that a narrow planetesimal belt and a radiation pressure induced dust halo cannot account for the observed radial brightness profiles. A single, wide planetesimal disc does not reproduce the data either. Instead, we propose a two-population model, comprising a Kuiper-Belt-like structure of a low-eccentricity planetesimal population ("the classical Kuiper Belt") and a high-eccentricity population of comets ("scattered disc"). We argue that such a structure of the exo-Kuiper belt of HR~8799 could be explained with planet migration scenarios analogous to those proposed for the Kuiper Belt of the Solar System.
description: Accepted for publication in MNRAS, 10 Pages and 4 Figures
Additional file 5: of Transcriptomic profiling reveals MEP pathway contributing to ginsenoside biosynthesis in Panax ginseng
Creators: name: Xue, Le
name: He, Zilong
name: Bi, Xiaochun
name: Xu, Wei
name: Wei, Ting
name: Wu, Shuangxiu
name: Hu, Songnian
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Plant Biology

description: Table S5. Statistics of the isoform numbers of the genes related to ginsenoside biosynthesis among different Panax species and W. somnifera based on RNA-seq data. (PDF 90 kb)
Additional file 2: of Study protocol of a pragmatic randomized controlled trial incorporated into the Group Lifestyle Balanceâ ˘ program: the nutrigenomics, overweight/obesity and weight management trial (the NOW trial)
Creators: name: Horne, Justine
name: Gilliland, Jason
name: OâConnor, Colleen
name: Seabrook, Jamie
name: Hannaberg, Peter
name: Madill, Janet
Publisher: name: figshare
Year: 2019
Subjects: subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Science Policy

description: Sample Report for Standard Lifestyle Intervention (Control Group). Sample population-based lifestyle recommendations and information provided to the control group (DOCX 13 kb)
A VLA-GMRT Look at 11 Powerful FR II Quasars
Creators: name: Vaddi, S.
name: Kharb, P.
name: Daly, R. A.
name: O'Dea, C. P.
name: Baum, S. A.
name: Deo, D. K.
name: Barbusca, T. C.
name: Murali, C.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We present results from 1.4 and 5 GHz observations at matched resolution with the Karl G. Jansky Very Large Array (VLA) of 11 powerful 3C FR II quasars. We examine the 11 quasars along with a sample of 13 narrow-line FR II radio galaxies and find that radio-loud unification largely holds but environmental effects cannot be ignored. The radio core prominence, largest linear size, and axial ratio parameter values indicate that quasars are at relatively smaller angles compared to the radio galaxies and thus probe orientation. Lack of correlation between statistical orientation indicators such as misalignment angle and radio core prominence, and larger lobe distortions in quasars compared to radio galaxies suggest that intrinsic/environment effects are also at play. Some of 150 MHz observations with the TGSS-GMRT reveal peculiar lobe morphologies in these FR II sources, suggesting complex past lives and possibly restarted AGN activity. Using the total 150~MHz flux density we estimate the time-averaged jet kinetic power in these sources and this ranges from (1 - 38)x10^45 erg/s, with 3C 470 having the highest jet kinetic power.
description: Accepted in MNRAS; 26 pages, 11 figures in the main body, 16 figures in the appendix
Critical behaviour of annihilating random walk of two species with exclusion in one dimension
Creators: name: Odor, Geza
name: Menyhard, Nora
Publisher: name: arXiv
Year: 2000
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: The $A+A\to 0$, $B+B\to 0 $ process with exclusion between the different kinds is investigated here numerically. Before treating this model explicitly, we study the generalized Domany-Kinzel cellular automaton model of Hinrichsen on the line of the parameter space where only compact clusters can grow. The simplest version is treated with two absorbing phases in addition to the active one. The two kinds of kinks which arise in this case do not react, leading to kinetics differing from standard annihilating random walk of two species. Time dependent simulations are presented here to illustrate the differences caused by exclusion in the scaling properties of usually discussed characteristic quantities. The dependence on the density and composition of the initial state is most apparent. Making use of the parallelism between this process and directed percolation limited by a reflecting parabolic surface we argue that the two kinds of kinks exert marginal perturbation on each other leading to deviations from standard annihilating random walk behavior.
description: 12 pages, 16 figures, small typos corrected, 2 references added
Transparency in Usable Privacy and Security Research: Scholars’ Perspectives, Practices, and Recommendations
Creators: name: Klemmer, Jan
name: Schmüser, Juliane
name: Lowens, Byron M
name: Fischer, Fabian
name: Schmüser, Lea
name: Schaub, Florian
name: Fahl, Sascha
Publisher: name: CISPA
Year: 2025

description: Transparent reporting of research is a crucial aspect of good scientific practice and contributes to trustworthy science. Transparency helps to understand research processes, assess the validity of research contributions, and facilitates replication of studies and reported results. In the face of reproducibility crises in other fields, the security and privacy (SP) research community in general and the usable privacy and security (UPS) community in particular lack clear standards for transparent research reporting.

To gain insights into current research transparency practices and associated challenges and obstacles in the UPS community, we report findings from 24 semi-structured interviews with UPS researchers. We find that researchers value research transparency and already apply several transparency reporting practices. However, an implicit community standard without incentives that outweigh challenges and drawbacks appears to prevent further advances in research transparency. Based on our findings, we conclude with recommendations for transparency practices and guidance for publication venues to better incentivize research transparency (e.g., adapting artifact evaluation to typical UPS artifacts like study materials) and to alleviate constraints that hinder transparency (e.g., removing page limits on appendices). We hope our findings can spur community discussion and effort to improve research quality through more transparent research reporting.
Coccolepidae Berg 1940
Creators: name: Laan, Richard Van Der
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Palaeonisciformes
Coccolepidae

description: † Coccolepidae Berg 1940: 400 (family)
 † Coccolepis Agassiz 1844 [family name also seen as † Coccolepididae]
description: Published as part of Laan, Richard Van Der, 2018, Family-group names of fossil fishes, pp. 1-167 in European Journal of Taxonomy 466 on page 46, DOI: 10.5852/ejt.2018.466, http://zenodo.org/record/5557557
Singularities in the optical response of cuprates
Creators: name: Abanov, Ar.
name: Chubukov, Andrey V.
name: Schmalian, Jörg
Publisher: name: arXiv
Year: 2001
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We argue that the detailed analysis of the optical response in cuprate superconductors allows one to verify the magnetic scenario of superconductivity in cuprates, as for strong coupling charge carriers to antiferromagnetic spin fluctuations, the second derivative of optical conductivity should contain detectable singularities at $2Δ+Δ_{\rm spin}$, $4Δ$, and $2Δ+2Δ_{\rm spin}$, where $Δ$ is the amplitude of the superconducting gap, and $Δ_{s}$ is the resonance energy of spin fluctuations measured in neutron scattering. We argue that there is a good chance that these singularities have already been detected in the experiments on optimally doped $YBCO$.
description: 6 pages, 4 figures
Validated Gas Chromatography – Mass Spectrometry (GC-MS) Method for Simultaneous Quantitation of Tris(4-Chlorophenyl)Methane and Tris(4-Chlorophenyl)Methanol in Rat Plasma and Fetus
Creators: name: Mutlu, Esra
name: Cao, Yu
name: Pierfelice, Jessica
name: Graber, Brent
name: Burback, Brian
name: Waidyanatha, Suramya
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Infectious Diseases
subject: FOS: Health sciences

description: Tris(4-chlorophenyl)methane (TCPMe) is a byproduct of dichlorodiphenyltrichloroethane synthesis. TCPMe and its metabolite tris(4-chlorophenyl)methanol (TCPMOH) are environmentally prevalent and have been detected in wildlife and humans. Due to inadequate data addressing its toxicity, the National Toxicology Program (NTP) is testing TCPMe in Hsd:Sprague Dawley SD (HSD) rats following perinatal exposure. In support of the toxicology studies, a gas chromatography – mass spectrometry (GC-MS) method was validated to simultaneously quantitate TCPMe and TCPMOH in male Sprague Dawley rat plasma (primary matrix) over calibration standard ranges of 2–200 ng/mL and 1–100 ng/mL, respectively. The method was linear (r2 ≥ 0.9975), accurate (relative error (RE) ≤ ±12.8 (TCPMe) and ±14.5% (TCPMOH), and precise (relative standard deviation (RSD) ≤ 7.6 (TCPMe) and 3.8% (TCPMOH)). The limits of quantitation were 2 and 1 ng/mL and the limits of detection were 0.73 and 0.07 ng/mL for TCPMe and TCPMOH, respectively. Samples, as high as 2000 ng/mL for TCPMe (RSD ≤ 3.9, RE ≤ ±1.0) and 1000 ng/mL for TCPMOH (RSD ≤ 1.0, RE ≤ ±2.9), were successfully diluted with plasma into the validated concentration range. The method was selective and both TCPMe and TCPMOH were quantified in all secondary matrices (HSD male and female plasma, gestation day (GD)18 plasma, amniotic fluid, and fetus, postnatal day (PND)4 dam and pup plasma) using a primary matrix curve (RE ≤ ±14.4% and 11.5; RSD ≤ 7.6 and 11.8%, respectively). These results demonstrate that the method is suitable for simultaneous quantitation of TCPMe and TCPMOH in rodent plasma and fetuses for the evaluation of gestational and lactational transfer following perinatal exposure of TCPMe in NTP studies.
Family-group names of fossil fishes
Creators: name: Laan, Richard Van Der
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy

description: †Tienshaniscidae Liu & Wang 1978: 3 (family)
 † Tienshaniscus Liu & Wang 1978 [Lu & Chen 2010: 7 wrote †Tienshanididae]
description: Published as part of Laan, Richard Van Der, 2018, Family-group names of fossil fishes, pp. 1-167 in European Journal of Taxonomy 466 on page 46, DOI: 10.5852/ejt.2018.466, http://zenodo.org/record/5557557
Fractal Analysis of Protein Potential Energy Landscapes
Creators: name: Lidar, D. A.
name: Thirumalai, D.
name: Elber, R.
name: Gerber, R. B.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Chemical Physics (physics.chem-ph)
subject: Quantitative Biology (q-bio)
subject: FOS: Physical sciences
subject: FOS: Biological sciences

description: The fractal properties of the total potential energy V as a function of time t are studied for a number of systems, including realistic models of proteins (PPT, BPTI and myoglobin). The fractal dimension of V(t), characterized by the exponent γ, is almost independent of temperature and increases with time, more slowly the larger the protein. Perhaps the most striking observation of this study is the apparent universality of the fractal dimension, which depends only weakly on the type of molecular system. We explain this behavior by assuming that fractality is caused by a self-generated dynamical noise, a consequence of intermode coupling due to anharmonicity. Global topological features of the potential energy landscape are found to have little effect on the observed fractal behavior.
description: 17 pages, single spaced, including 12 figures
title: Paratexte_Les Petites industries d'amateurs
Creators: name: AmateurS
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020

description: Paratexte
description: ID_PARA_00714
The Search for Supersymmetry at the Tevatron Collider
Creators: name: Carena, M.
name: Culbertson, R. L.
name: Eno, S.
name: Frisch, H. J.
name: Mrenna, S.
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We review the status of searches for Supersymmetry at the Tevatron Collider. After discussing the theoretical aspects relevant to the production and decay of supersymmetric particles at the Tevatron, we present the current results for Runs Ia and Ib as of the summer of 1997. To appear in the book "Perspectives in Supersymmetry", edited by G.L. Kane, World Scientific.
description: 84 pages with 31 figures imbedded using psfig.tex. Uses sprocl.sty
LA DECEPCIÓN EN EL ROSTRO REAL DETRÁS DE LAS MASCARILLAS. UN ACERCAMIENTO CIENTÍFICO
Creators: name: Valdés, Alejandro Jesús Bermejo
Publisher: name: Zenodo
Year: 2021
Subjects: mascarillas, rostro, belleza, deformidad facial

description: ¡Se quitó la mascarilla y NO SE PERECÍA EN NADA a lo que esperábamos! Esta es una frase que todos hemos escuchado en los últimos meses, con algunas variaciones. Parece una situación trivial, pero detrás puede contener todo un proceso cerebral complejo donde se llena de manera inconsciente el espacio detrás de la mascarilla con un rostro adaptado a nuestras experiencias perceptivas. Aquí, estaremos haciendo un mini-acercamiento científico a este fenómeno biológico, psicológico y social.
Additional file 3: of Study protocol of a pragmatic randomized controlled trial incorporated into the Group Lifestyle Balanceâ ˘ program: the nutrigenomics, overweight/obesity and weight management trial (the NOW trial)
Creators: name: Horne, Justine
name: Gilliland, Jason
name: OâConnor, Colleen
name: Seabrook, Jamie
name: Hannaberg, Peter
name: Madill, Janet
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Sample Report for Personalized Lifestyle Intervention. Sample genetic-based lifestyle recommendations and information provided to the lifestyle genomics intervention group (DOCX 14 kb)
A boundary-based net-exchange Monte Carlo method for absorbing and scattering thick media
Creators: name: Eymet, V.
name: Fournier, R.
name: Blanco, S.
name: Dufresne, J. L.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: A boundary-based net-exchange Monte Carlo method was introduced in [1] that allows to bypass the difficulties encountered by standard Monte Carlo algorithms in the limit of optically thick absorption (and/or for quasi-isothermal configurations). With the present paper, this method is extended to scattering media. Developments are fully 3D, but illustrations are presented for plane parallel configuration. Compared to standard Monte Carlo algorithms, convergence qualities have been improved over a wide range of absorption and scattering optical thicknesses. The proposed algorithm still encounters a convergence difficulty in the case of optically thick, highly scattering media.
Thermodynamic properties of extremely diluted symmetric Q-Ising neural networks
Creators: name: Bolle', D.
name: Carlucci, D. M.
name: Shim, G. M.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Using the replica-symmetric mean-field theory approach the thermodynamic and retrieval properties of extremely diluted {\it symmetric} $Q$-Ising neural networks are studied. In particular, capacity-gain parameter and capacity-temperature phase diagrams are derived for $Q=3, 4$ and $Q=\infty$. The zero-temperature results are compared with those obtained from a study of the dynamics of the model. Furthermore, the de Almeida-Thouless line is determined. Where appropriate, the difference with other $Q$-Ising architectures is outlined.
description: 16 pages Latex including 6 eps-figures. Corrections, also in most of the figures have been made
Structural derivatives on time scales
Creators: name: Bayour, Benaoumeur
name: Torres, Delfim F. M.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Classical Analysis and ODEs (math.CA)
subject: FOS: Mathematics
subject: 26A33, 26E70

description: We introduce the notion of structural derivative on time scales. The new operator of differentiation unifies the concepts of fractal and fractional order derivative and is motivated by lack of classical differentiability of some self-similar functions. Some properties of the new operator are proved and illustrated with examples.
description: This is a preprint of a paper whose final and definite form is with 'Commun. Fac. Sci. Univ. Ank. Ser. A1 Math. Stat.', ISSN: 1303-5991. Submitted 14 May 2018; Article revised 18 Nov 2018; Article accepted for publication 23 Nov 2018
Additional file 3: of Consideration of sex and gender in Cochrane reviews of interventions for preventing healthcare-associated infections: a methodology study
Creators: name: López-Alcalde, Jesús
name: Stallings, Elena
name: Nunes, Sheila Cabir
name: Chávez, Abelardo Fernández
name: Daheron, Mathilde
name: Cosp, Xavier Bonfill
name: Zamora, Javier
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Biotechnology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: 60506 Virology
subject: FOS: Biological sciences
subject: Computational Biology

description: Search strategy. (DOCX 15 kb)
Dependence of the Fractional Quantum Hall Edge Critical Exponent on the Range of Interaction
Creators: name: Goldman, V. J.
name: Tsiper, E. V.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Comment on A.M.Chang et al, PRL 86, 143 (2001).
description: 1 page, 1 Fig
Measurement of $Br(D^{0}\to K^{-}π^{+})$ using Partila Reconstruction of $\bar{B}\to D^{*+}X\ell^{-}\barν$
Creators: name: CLEO Collaboration
name: al, M. Artuso et
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: We present a measurement of the absolute branching fraction for $D^0 -> K^- pi^+$ using the reconstruction of the decay chain $Bbar -> D^{*+} X l^- nubar $, $D^{*+} -> D^0 pi^+$ where only the lepton and the low-momentum pion from the $D^{*+}$ are detected. With data collected by the CLEO II detector at the Cornell Electron Storage Ring, we have determined $Br(D^0 -> K^- pi^+)= [3.81 +- 0.15(stat.) +- 0.16(syst.)]%$.
description: 10 page postscript file, postscript file also available through http://w4.lns.cornell.edu/public/CLNS
On the stable estimation of flow geometry and wall shear stress from magnetic resonance images
Creators: name: Egger, Herbert
name: Teschner, Gabriel
Publisher: name: arXiv
Year: 2018
Subjects: subject: Numerical Analysis (math.NA)
subject: FOS: Mathematics

description: We consider the stable reconstruction of flow geometry and wall shear stress from measurements obtained by magnetic resonance imaging. As noted in a review article by Petersson, most approaches considered so far in the literature seem not be satisfactory. We therefore propose a systematic reconstruction procedure that allows to obtain stable estimates of flow geometry and wall shear stress and we are able to quantify the reconstruction errors in terms of bounds for the measurement errors under reasonable smoothness assumptions. A full analysis of the approach is given in the framework of regularization methods. In addition, we discuss the efficient implementation of our method and we demonstrate its viability, accuracy, and regularizing properties for experimental data.
Family-group names of fossil fishes
Creators: name: Laan, Richard Van Der
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy

description: †Uighuroniscidae Su 1985: 65, 129 (family)
 † Uighuroniscus Su 1985
description: Published as part of Laan, Richard Van Der, 2018, Family-group names of fossil fishes, pp. 1-167 in European Journal of Taxonomy 466 on page 46, DOI: 10.5852/ejt.2018.466, http://zenodo.org/record/5557557
Climbing rope inspection device
Creators: name: Gerlach, Nathaniel
Publisher: name: Unknown
Year: 2013

description: The purpose of this project was to design and prototype a motorized device that can feed
various diameters of climbing rope so that users can inspect their ropes more efficiently. Current
inspection methods (i.e. by hand) are slow and inefficient. Many climbers do not inspect their
ropes at all because it takes so long and is tiring on hands. This presents an obvious danger to all
involved parties. It is hoped that a more effective inspection method, such as the one developed
in this project, will encourage climbers to inspect their ropes and in turn improve safety. As the
unit mns, a loop of rope is fed in front of the user so that they can visually inspect the rope for
damage. The device itself was designed to be portable and compact while still achieving design
objectives such as: having built in safeties, being compatible with various rope sizes, and feeding
rope at an adequate speed.
BOSHLANG'ICH SINF ONA TILI DARSLARIDA SIFAT SO'Z TURKUMINI O'QITISH METODIKASI
Creators: name: Xudoyqulova, Bahora
Publisher: name: Zenodo
Year: 2025

description: Mazkur maqolada boshlang‘ich sinflarda ona tili darslarida sifat so‘z turkumini o‘qitish metodikasi har tomonlama yoritib berilgan bo‘lib, unda sifatning grammatik va semantik xususiyatlari, ularni o‘quvchilarga tushuntirish usullari va ta’lim jarayonida interfaol metodlar yordamida erishiladigan samaradorlik, shuningdek, zamonaviy texnologik yechimlar qo‘llanilishi batafsil tahlil qilingan. Shuningdek, maqolada sifatni o‘rgatishda yuzaga kelishi mumkin bo‘lgan muammolar, ularni bartaraf etish yo‘llari va darslarni boyituvchi qo‘shimcha didaktik materiallar keltirilgan, bu esa maqolani boshlang‘ich sinf o‘qituvchilari uchun nafaqat nazariy, balki amaliy qo‘llanma sifatida ham foydalanishga yaroqli qiladi.
Additional file 1: of Consideration of sex and gender in Cochrane reviews of interventions for preventing healthcare-associated infections: a methodology study
Creators: name: López-Alcalde, Jesús
name: Stallings, Elena
name: Nunes, Sheila Cabir
name: Chávez, Abelardo Fernández
name: Daheron, Mathilde
name: Cosp, Xavier Bonfill
name: Zamora, Javier
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: 60506 Virology
subject: FOS: Biological sciences
subject: Computational Biology

description: Glossary of terms. (DOCX 28 kb)
Additional file 1 of Decoding the key compounds and mechanism of Shashen Maidong decoction in the treatment of lung cancer
Creators: name: Cai, Jieqi
name: Chen, Yupeng
name: Wang, Kexin
name: Li, Yi
name: Wu, Jie
name: Yu, Hailang
name: Li, Qingping
name: Wu, Qi
name: Meng, Wei
name: Wang, Handuo
name: Lu, Aiping
name: Huang, Mianbo
name: Wei, Genxia
name: Guan, Daogang
Publisher: name: figshare
Year: 2023
Subjects: Biochemistry
Medicine
Cell Biology
Pharmacology
Biotechnology
Biological Sciences not elsewhere classified
Information Systems not elsewhere classified
Cancer

description: Additional file 1. Supporting Information.
Additional file 2: of Consideration of sex and gender in Cochrane reviews of interventions for preventing healthcare-associated infections: a methodology study
Creators: name: López-Alcalde, Jesús
name: Stallings, Elena
name: Nunes, Sheila Cabir
name: Chávez, Abelardo Fernández
name: Daheron, Mathilde
name: Cosp, Xavier Bonfill
name: Zamora, Javier
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: 60506 Virology
subject: FOS: Biological sciences
subject: Computational Biology

description: Interventions defined as eligible. (DOCX 13 kb)
Family-group names of fossil fishes
Creators: name: Laan, Richard Van Der
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy

description: Family †Acropholidae Kazantseva-Selezneva 1977
 †Acropholidae Kazantseva-Selezneva 1977: 102 (family) † Acropholis Aldinger 1935 [family name sometimes seen as †Acropholididae]
description: Published as part of Laan, Richard Van Der, 2018, Family-group names of fossil fishes, pp. 1-167 in European Journal of Taxonomy 466 on page 46, DOI: 10.5852/ejt.2018.466, http://zenodo.org/record/5557557
Figure S1 from Effects of uniform vertical inflow perturbations on the performance of flapping wings
Creators: name: Mazharmanesh, Soudeh
name: Stallard, Jace
name: Medina, Albert
name: Fisher, Alex
name: Ando, Noriyasu
name: Tian, Fang-Bao
name: Young, John
name: Ravi, Sridhar
Publisher: name: The Royal Society
Year: 2021
Subjects: subject: Biological Engineering
subject: 110601 Biomechanics
subject: FOS: Health sciences

description: Variation in force production per stroke. Evolution of σ̅⁄C̅L and σ̅⁄C̅D. The mean standard deviation (σ̅) was obtained by time-averaging the phase-averaged σ under each JVert. To examine the consistency of C̅L and C̅D between flapping cycles, we compared the σ̅⁄C̅L and σ̅⁄C̅D where σ̅ is the mean standard deviation obtained over at least 8 tests. For the downward and upward inflow conditions in regime R1, σ̅⁄C̅L and σ̅⁄C̅D were almost equal to those of the hover (σ̅⁄C̅L=0.054,σ̅⁄C̅D=0.063). For the second regime R2 in the upward inflow an increase in σ̅⁄C̅L and σ̅⁄C̅D compared to hover was observed peaking at JVert=0.4 , σ̅⁄C̅L=0.127,σ̅⁄C̅D=0.119, denoting the interaction with turbulent flow in this regime.
Hydrodynamics of liquids of arbitrarily curved flux-lines and vortex loops
Creators: name: Benetatos, P.
name: Marchetti, M. C.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We derive a hydrodynamic model for a liquid of arbitrarily curved flux-lines and vortex loops using the mapping of the vortex liquid onto a liquid of relativistic charged quantum bosons in 2+1 dimensions recently suggested by Tesanovic and by Sudbo and collaborators. The loops in the flux-line system correspond to particle-antiparticle fluctuations in the bosons. We explicitly incorporate the externally applied magnetic field which in the boson model corresponds to a chemical potential associated with the conserved charge density of the bosons. We propose this model as a convenient and physically appealing starting point for studying the properties of the vortex liquid.