cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Kritzlerius Londoño-Mesa 2009, gen. nov.
Creators: name: Londoño-Mesa, Mario H.
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Polychaeta
Terebellida
Terebellidae
Kritzlerius

description: Kritzlerius gen. nov.
Genus A, Kritzler, 1984:52–62, 63; Figs 52–59, 60A-G.
 Type species: Kritzlerius anomalus sp. nov., by monotypy.
 Etymology: This genus is dedicated to Dr. Henry Kritzler, a passionate taxonomist of terebellids from the Caribbean region.
 Diagnosis: Tentacles of two types, each type in different group; short and thin tentacles on wide separated transverse membrane, dorsally attached to upper lip; and long and thick tentacles in two lateral groups on base of upper lip; two pairs of branchiae as long, thin, sessile filaments, from segment 2; eyespots present in two lateral groups; notopodial glandular tissue on segments 4–7; lateral lappets absent; notopodia from segment 3; notochaetae of two types, short smooth, unilimbate, curved distally; and long, straight, unilimbate; neuropodia with uncini avicular in single rows from segment 10.
 Remarks: Kritzlerius gen. nov., was identified by Kritzler (1984), but he never formally named the taxon, nor a type species designated, although he provided a detailed description. This genus belongs to Thelepodinae because of the presence of sessile unbranched branchiae on the anterior thoracic segments, and the presence of uncini in single rows along the body.
 Precise information about the main characters of each genus in Thelepodinae is presented by Hutchings (1997). She includes four genera with long tentacular membrane, branchiae on segments 2 and 3, and notopodia beginning on segment 3, which are also characters presented by Kritzlerius gen. nov.. Those genera are Decathelepus Hutchings, 1977, Glossothelepus Hutchings and Glasby, 1986, Rhinothelepus Hutchings, 1974, and Telothelepus Day, 1955. Nevertheless, all these genera differ from Kritzlerius gen. nov., in having one group of tentacles of one length and thickness, 15 thoracic segments with notochaetae, and one type of notochaetae thin, unilimbate, smooth-tipped. Additionally, Decathelepus has uncini from segment 10, Glossothelepus has uncini from segment 9, Rhinothelepus has uncini from segment 8, and Telothelepus has uncini from segment 18. In contrast, Kritzlerius gen. nov., has more than 20 thoracic segments with notochaetae, two isolated groups of tentacles with different length and thickness, two types of notochaetae, and uncini beginning on segment 10.
 Thus, after the revision of the material, I conclude that this material belongs to a new genus because of the characters stated above, and they are not seen in other Thelepodinae. The genus is established, diagnosed, and Kritzlerius anomalus sp. nov., is described as its type species.
description: Published as part of Londoño-Mesa, Mario H., 2009, Terebellidae (Polychaeta: Terebellida) from the Grand Caribbean region 2320, pp. 1-93 in Zootaxa 2320 (1) on pages 71-72, DOI: 10.11646/zootaxa.2320.1.1, http://zenodo.org/record/5316176
Biofunctionalised Coordination Cages and Quantified Speciation in Supramolecular Mixtures
Creators: name: Kieffer, Marion
Publisher: name: Apollo - University of Cambridge Repository
Year: 2019
Subjects: Supramolecular Chemistry
host-guest chemistry
Mass-spectrometry
Biofunctionalisation
Coordination Cages

description: Coordination cages formed by supramolecular self-assembly are excellent candidates for the selective encapsulation of molecules and sheltering these guests from their environment after uptake. The easily tuneable nature of these 3D-structures can make them versatile carriers in applications such as drug delivery. However, to achieve this, the capsules need to be converted into biocompatible vehicles by the conjugation of biomolecules onto the cages’ surface for example. This thesis describes initial efforts towards this goal. Firstly, the compatibility and influence of coordination cages on a simple biomaterial was studied by the incorporation of tetrahedral cages in a peptide-based supramolecular gel. Rheological changes of the macroscopic material were observed while the host-guest properties of the cages remained unchanged, enabling the chemical segregation of guests. Secondly, bioconjugation of single amino acids and a tripeptide gelator onto coordination cages were investigated, showing that the properties of the peptide such as chirality and gelation were transferred to the whole system. Addition of a photoacid generator to the organo-gel formed triggered the reversible gel-sol transition of the material under alternating cycles of light irradiation and darkness. Finally, a water-soluble cage was synthesised using N-acetylatedgalactoamine building blocks. The geometry and organisation of the sugar biotags were engineered to allow ligation of the cage onto the asialoglycoprotein receptor of hepatocytes with the goal of realising the cellular internalisation of the complex and its cargo. In synthetic supramolecular systems, molecules can interact in different ways to yield complex self-assembled libraries. Multiple components combined can result in the integrative formation of single products or, most often, multiple self-assembled products. Deciphering the self-assembly rules within such systems involves new characterisation challenges: dynamic, low-symmetry products are difficult to detect and identify by NMR spectroscopy and labile species can re-equilibrate after chromatographic separation. Hence, in this thesis the potential to assess individual outcomes of self-sorting experiments by mass spectrometric techniques was investigated in three case-studies. A new methodology to calculate the relative energies of heteroleptic structures compared to the more stable homoleptic was developed, allowing for the quantification of each ligand’s structural preferences. Following a similar approach, the effect of anion binding on a dynamic library of self-assembled tetrahedra was probed. Finally, quantitative information on speciation within mixtures was obtained for a complex system of self-assembled scalenohedra and pseudo-octahedra.
description: European Union's Horizon 2020 Marie Sklodowska-Curie Actions
MOESM4 of Dietary-phytochemical mediated reversion of cancer-specific splicing inhibits Warburg effect in head and neck cancer
Creators: name: Yadav, Sandhya
name: Bhagat, Somnath
name: Gupta, Amit
name: Samaiya, Atul
name: Aasheesh Srivastava
name: Shukla, Sanjeev
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Cancer

description: Additional file 4: Fig. S4. Combinatorial effect of Curcumin and 5-Aza-2′-deoxycytidine treatment affects PKM splicing. (a-d) RPS16 normalized qRT-PCR in H157 cells upon treatment with different concentration of (a-b) Aza and (c-d) Aza + curcumin for 48 h to check the splicing of PKM gene using indicated exon junction specific primers. (e) Western-blot showing the Flag-tagged PKM2 in vector control and PKM2-overexpression (PKM2-OE) transfected in H157 cells. GAPDH acts as a loading control. Three independent experiments were conducted with mean values ± SD. P-value calculated using two-tailed Student’s t-test, * P
Streblosoma Sars 1872
Creators: name: Londoño-Mesa, Mario H.
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Polychaeta
Terebellida
Terebellidae
Streblosoma

description: Streblosoma Sars, 1872
Sars, 1872:410.— Hessle, 1917:210, Text-Fig. 61.— Hutchings & Glasby, 1986:110; 1987:222.— Hartmann-Schröder, 1996:527–528.
 Synonyms: Grymaea Malmgren, 1866 (preocuped by a protozoa name); Eugrymaea Verrill, 1900; Pseudothelepus Augener, 1918.
 Type species: Grymaea bairdi Malmgren, 1866, by original designation.
 Diagnosis: Zero to five, commonly three, pairs of branchiae; when present, they begin on segment 2; lateral lappets present or absent; ventral shields from segment 2; nephridial papillae on segments 2–5; 40 or less pairs of notopodia from segment 2; chaetae smooth-tipped, limbate; pairs of neuropodia from segment 5; uncini avicular with button-shaped subrostral process.
 Remarks: According to Holthe (1986b), only two species described are valid for the Grand Caribbean region: Streblosoma hartmanae Kritzler, 1971, from Florida, and S. polybranchia Verrill, 1900, from Bermuda. Hartman (1956, 1959) and Holthe (1986b) noticed that S. verrilli Treadwell, 1911, from Florida, is a junior synonym of Thelepus setosus. Nevertheless, based upon the type specimen, this species belongs to Thelepus, being redescribed as Thelepus verrilli (Treadwell, 1911) comb. nov., (see below). A third species, S. tenhovei sp. nov., is also described.
The original generic description by Sars (1872) stated that the genus may or may not have eyespots, and that uncini were uniserial (MF:1). However, uncini may have more than one tooth present above the main fang.
description: Published as part of Londoño-Mesa, Mario H., 2009, Terebellidae (Polychaeta: Terebellida) from the Grand Caribbean region 2320, pp. 1-93 in Zootaxa 2320 (1) on page 74, DOI: 10.11646/zootaxa.2320.1.1, http://zenodo.org/record/5316176
Contracting Arbitrary Tensor Networks: General Approximate Algorithm and Applications in Graphical Models and Quantum Circuit Simulations
Creators: name: Pan, Feng
name: Zhou, Pengfei
name: Li, Sujie
name: Zhang, Pan
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computational Physics (physics.comp-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We present a general method for approximately contracting tensor networks with an arbitrary connectivity. This enables us to release the computational power of tensor networks to wide use in inference and learning problems defined on general graphs. We show applications of our algorithm in graphical models, specifically on estimating free energy of spin glasses defined on various of graphs, where our method largely outperforms existing algorithms including the mean-field methods and the recently proposed neural-network-based methods. We further apply our method to the simulation of random quantum circuits, and demonstrate that, with a trade off of negligible truncation errors, our method is able to simulate large quantum circuits that are out of reach of the state-of-the-art simulation methods.
description: 14 pages, 13 figures
Additional file 11 of Measuring and modeling energy and power consumption in living microbial cells with a synthetic ATP reporter
Creators: name: Yijie Deng
name: Beahm, Douglas Raymond
name: Ionov, Steven
name: Sarpeshkar, Rahul
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences

description: Additional file 11: Table S2. Calculated ATP values in E. coli BL21(DE3) grown in the minimal medium. a: Power consumption was estimated from 54 kJ/mole ATP [53, 54]. Note: all values are estimated from one biological experiment with three samples measured at each time point. In this experiment, ATP concentration was measured by the HC-M reporter and ATP consumption rates were calculated by the kinetic model.
Additional file 12 of Measuring and modeling energy and power consumption in living microbial cells with a synthetic ATP reporter
Creators: name: Yijie Deng
name: Beahm, Douglas Raymond
name: Ionov, Steven
name: Sarpeshkar, Rahul
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences

description: Additional file 12: Table S3. Model parameters of the model for E. coli strain BL21(DE3) grown in minimal medium. These parameters are used in the simulation that calculates the dynamic ATP values in Additional file 11: Table S2. These parameters are same to those used for the BW25113 strain with only slight changes for a few parameters to account for strain-to-strain variations.
MOESM5 of Dietary-phytochemical mediated reversion of cancer-specific splicing inhibits Warburg effect in head and neck cancer
Creators: name: Yadav, Sandhya
name: Bhagat, Somnath
name: Gupta, Amit
name: Samaiya, Atul
name: Aasheesh Srivastava
name: Shukla, Sanjeev
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Computational Biology

description: Additional file 5: Fig. S5. Effect of Curcumin on global alternative splicing events. (a) Clustering analysis of top 30 spliced events (15 exclusion and 15 inclusion exons) in curcumin-PEC treated versus control-PEC H157 cells. (a) Pi-graph for global differential alternatively spliced genes. (b) Global differential expression pattern of alternatively spliced exons in curcumin-PEC treated versus control-PEC H157 cell line (n = 2 splicing index ≤ − 2 and ≥ + 2; P<0.05). The graph represents normalized expression levels (SST-RMA algorithm) of differentially expressed exon probes. Red color dots represent exon exclusion. (c) Gene Ontology analysis of alternatively spliced genes upon curcumin-PEC treatment in H157 cells. The graph shows the top GO functions regulated in molecular and biological process category. (d) The graph shows the correlation of spliced genes with the disease category. (n = 2).
Additional file 13 of Measuring and modeling energy and power consumption in living microbial cells with a synthetic ATP reporter
Creators: name: Yijie Deng
name: Beahm, Douglas Raymond
name: Ionov, Steven
name: Sarpeshkar, Rahul
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences

description: Additional file 13: Figure S10. Plasmids constructed and tested in this work. (a) High-copy-plasmid, low RBS reporter HC-M. (b) High-copy-plasmid, medium RBS reporter HC-E. (c) High-copy-plasmid control reporter HC-con with T7A1 constitutive promoter. (d) Low-copy-plasmid, medium RBS reporter LC-F. (e) Low-copy-plasmid, high RBS reporter LC-G. High-copy plasmids have a ColE1 origin of replication while the low-copy plasmids have a PSC101 origin of replication.
Bell Inequalities and Pseudo-functional densities
Creators: name: Geurdes, JF
Publisher: name: arXiv
Year: 2001
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: A local hidden variable model with pseudo-functional density function restricted to a binary probability event space is demonstrated to be able to reproduce the quantum correlation in an Einstein Podolsky Rosen Bohm and Aharonov type of experiment. In the density function use is made of Hadamard's finite part which disables the possibility to derive Bell's inequality from models with such a type of density function.
description: 5 pages 0 figures journal article
Additional file 14 of Measuring and modeling energy and power consumption in living microbial cells with a synthetic ATP reporter
Creators: name: Yijie Deng
name: Beahm, Douglas Raymond
name: Ionov, Steven
name: Sarpeshkar, Rahul
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences

description: Additional file 14. The inserted DNA sequences of the plasmids used in this study.
Streblosoma polybranchia , Verrill 1900
Creators: name: Londoño-Mesa, Mario H.
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Polychaeta
Terebellida
Terebellidae
Streblosoma
Streblosoma polybranchia

description: Streblosoma polybranchia Verrill, 1900 nomen dubius
 Streblosoma (Eugrymaea) polybranchia, Verrill, 1900:662.— Hessle, 1917:212.
 Streblosoma polybranchia, Kritzler, 1971:905.
 Type material: Not found.
 Diagnosis: Lateral lappets on segments 1–2. Five pairs of branchiae, first four pairs with 4 filaments, those in first pair longest; one filament in last pair. Notochaetae progressively decreasing in size; forty-four pairs of notopodia; notochaetae of two lengths, long chaetae slender, limbate, with slender tips, short chaetae wider, limbate, and bent distally, with shorter tips. Neuropodia from segment 4, with thoracic and abdominal uncini with dental formula MF:2–3:5:1–3, with middle tooth in each row, longer and more visible than adjacent teeth.
 Discussion: Type specimens were not located. This species was initially placed in the subgenus Eugrymaea by Verrill (1900); however, Hessle (1917) considered the genus Eugrymaea established for terebellids with 4–5 pairs of branchiae, invalid, without any justification. Kritzler (1971) recognized S. polybranchia; nevertheless, he does not mention the presence of lateral lappets on the first two segments. Lateral lappets have been used as a character to delineate species of Thelepus and Euthelepus, the latter having lateral lappets. Thus, the corroboration of lateral lappets on this species, after the revision of type specimen, would suggest the possibility of splitting this genus, in similar way it was done for Thelepus. Also, the number of pairs of branchiae, and the form of uncini must also be considered as the number and arrangement of teeth above the main fang are different from that of the type species of the genus. Finally, Streblosoma is a genus with pairs of neuropodia from segment 5, but this species was described with neuropodia from segment 4. Thus, it is likely that this species belongs to other genus because of the combination of characters. Revision of type material will help to elucidate this. Until this revision is done, the species must remain a nomen dubius.
 Type locality: Bermuda.
description: Published as part of Londoño-Mesa, Mario H., 2009, Terebellidae (Polychaeta: Terebellida) from the Grand Caribbean region 2320, pp. 1-93 in Zootaxa 2320 (1) on page 76, DOI: 10.11646/zootaxa.2320.1.1, http://zenodo.org/record/5316176
The Literary Heritagescape: Translating Literary Settings into Heritage Sites
Creators: name: Ashworth, Georgia Rose
Publisher: name: Apollo - University of Cambridge Repository
Year: 2019
Subjects: heritagescape
heritage sites
literary heritage
Immersion
Boundaries
Authenticity
heritage
Sherlock Holmes Museum
Ashdown Forest
Green Gables

description: This dissertation examines the particular nature of setting-based literary heritage sites. These sites are in a unique position because of their connection to fiction. Three case studies are used to represent a range of setting-based literary heritage sites: Ashdown Forest, The Sherlock Holmes Museum, and Green Gables Heritage Place. The nature of these sites is examined through site observation of tangible and interpreted elements at each site and discussed through three themes: Immersion, Boundaries, and Authenticity. These themes draw from and re-examine current understanding of the heritagescape, and bring forth the challenges of mixing fiction and reality and the difficulties navigating traditional understandings of authenticity at these sites. This research shows how these sites can be analysed as heritage and do not need to be excluded because of their fictional connection. In fact, their unique position among heritage sites allows for new dimensions of the heritagescape to be considered and offers new understandings of how heritage is created and interpreted.
description: I received a Travel Grant from Downing College to help fund the fieldwork for this dissertation.
MOESM3 of Dietary-phytochemical mediated reversion of cancer-specific splicing inhibits Warburg effect in head and neck cancer
Creators: name: Yadav, Sandhya
name: Bhagat, Somnath
name: Gupta, Amit
name: Samaiya, Atul
name: Aasheesh Srivastava
name: Shukla, Sanjeev
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3: Fig. S3. Effect of DNMTs in PKM splicing. (a-b) RPS16 normalized qRT-PCR in shDNMT1 transfected cells versus shcontrol using the indicated primers for (a) DNMT1 and (b) PKM (c-d) RPS16 normalized qRT-PCR in shDNMT3A transfected cells versus shcontrol using the indicated primers for (c) DNMT3A and (d) PKM gene. (e) Western blot showing the protein level of DNMT3B in curcumin-PEC treated versus control PEC, GAPDH act as a loading control. (f-g) Curcumin affected level of methylation activity, in (f) pure DNMT3B enzyme, and (g) nuclear-extract from HNC cells using in vitro methyltransferase kit. Three independent experiments were conducted with mean values ± SD. P value calculated using two-tailed Student’s t-test, * P
Perturbation theory approach to predict the covariance matrices of the galaxy power spectrum and bispectrum in redshift space
Creators: name: Sugiyama, Naonori S.
name: Saito, Shun
name: Beutler, Florian
name: Seo, Hee-Jong
Publisher: name: arXiv
Year: 2019
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: In this paper, we predict the covariance matrices of both the power spectrum and the bispectrum, including full non-Gaussian contributions, redshift space distortions, linear bias effects and shot-noise corrections, using perturbation theory (PT). To quantify the redshift-space distortion effect, we focus mainly on the monopole and quadrupole components of both the power and bispectra. We, for the first time, compute the 5- and 6-point spectra to predict the cross-covariance between the power and bispectra, and the auto-covariance of the bispectrum in redshift space. We test the validity of our calculations by comparing them with the covariance matrices measured from the MultiDark-Patchy mock catalogues that are designed to reproduce the galaxy clustering measured from the Baryon Oscillation Spectroscopic Survey Data Release 12. We argue that the simple, leading-order perturbation theory works because the shot-noise corrections for the Patchy mocks are more dominant than other higher-order terms we ignore. In the meantime, we confirm some discrepancies in the comparison, especially of the cross-covariance. We discuss potential sources of such discrepancies. We also show that our PT model reproduces well the cumulative signal-to-noise of the power spectrum and the bispectrum as a function of maximum wavenumber, implying that our PT model captures successfully essential contributions to the covariance matrices.
description: 30 pages, 8 figures
Cosmological model differentiation through weak gravitational lensing
Creators: name: Guimarães, Antonio
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We investigate the potential of weak gravitational lensing maps to differentiate between distinct cosmological models, considering cosmic variance due to a limited map extension and the presence of noise. We introduce a measure of the differentiation between two models under a chosen lensing statistics. That enables one to determine in which circumstances (map size and noise level), and for which lensing measures two models can be differentiated at a desired confidence level. As an application, we simulate convergence maps for three cosmological models (SCDM, OCDM, and $Λ$CDM), calculate several lensing analyses for them, and compute the differentiation between the models under these analyses. We use first, second, and higher order statistics, including Minkowski functionals, which provide a complete morphological characterization of the lensing maps. We examine for each lensing measure used how noise affects its description of the convergence, and how this affects its ability to differentiate between cosmological models. Our results corroborate to the valuable use of weak gravitational lensing as a cosmological tool.
description: 12 pages, 8 figures. Submitted to MNRAS
Discussion session on diffractive Higgs production
Creators: name: De Roeck, A.
name: Royon, C.
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: This note summarizes the discussion session on diffractive Higgs production at the DIS2002 workshop.
description: Discussion session at DIS 2002, Cracow, May 2002
Omnidirectional transport and navigation of Janus particles through a nematic liquid crystal film
Creators: name: Sahu, Dinesh Kumar
name: Kole, Swapnil
name: Ramaswamy, Sriram
name: Dhara, Surajit
Publisher: name: arXiv
Year: 2019
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We create controllable active particles in the form of metal-dielectric Janus colloids which acquire motility through a nematic liquid crystal film by transducing the energy of an imposed perpendicular AC electric field. We achieve complete command over trajectories by varying field amplitude and frequency, piloting the colloids at will in the plane spanned by the axes of the particle and the nematic. The underlying mechanism exploits the sensitivity of electro-osmotic flow to the asymmetries of the particle surface and the liquid-crystal defect structure. We present a calculation of the dipolar force density produced by the interplay of the electric field with director anchoring and the contrasting electrostatic boundary conditions on the two hemispheres, that accounts for the dielectric-forward (metal-forward) motion of the colloids due to induced puller (pusher) force dipoles. These findings open unexplored directions for the use of colloids and liquid crystals in controlled transport, assembly and collective dynamics.
description: 11 pages, 9 figures
MOESM2 of Dietary-phytochemical mediated reversion of cancer-specific splicing inhibits Warburg effect in head and neck cancer
Creators: name: Yadav, Sandhya
name: Bhagat, Somnath
name: Gupta, Amit
name: Samaiya, Atul
name: Aasheesh Srivastava
name: Shukla, Sanjeev
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Molecular Biology
subject: Neuroscience
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Cancer

description: Additional file 2: Fig. S2. Relative curcumin uptake: (a) Diagrammatic representation of curcumin nanoparticle formulation. Amphiphilic polyelectrolytes (PEs) allow efficient entrapment of the hydrophobic drug, Curcumin. The drug-loaded PECs achieve intracellular delivery of Curcumin, resulting in efficient entry of curcumin into the cells. (b-c) Cell-viability assays by trypan blue method (b) in HNC cells after treatment for 24 h with curcumin-PEC and free-curcumin, (c) MTT assay of H157 cells after treatment with different concentration of DMSO, Ethanol and PEC control at the time point of 24 h. (d) Fluorescence microscopic images for free-curcumin and curcumin-PEC treated H157 cells, (e) Relative percent curcumin retention in H157 cells after treatment with free-curcumin and curcumin-PEC, (f-g) RPS16 normalized qRT-PCR in HNC cells treated with (f) curcumin-PEC versus PEC control and (g) free-curcumin versus ethanol-control using the indicated exon junction specific primers for PKM gene. (h) Semi-q PCR was performed followed by PstI digestion to distinguish the PKM 1 and PKM 2. Three independent experiments were conducted with mean values ± SD. P as calculated using two-tailed Student’s t-test, * P
Do all pure entangled states violate Bell's inequalities for correlation functions?
Creators: name: Zukowski, Marek
name: Brukner, Caslav
name: Laskowski, Wieslaw
name: Wiesniak, Marcin
Publisher: name: arXiv
Year: 2001
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Any pure entangled state of two particles violates a Bell inequality for two-particle correlation functions (Gisin's theorem). We show that there exist pure entangled N>2 qubit states that do not violate any Bell inequality for N particle correlation functions for experiments involving two dichotomic observables per local measuring station. We also find that Mermin-Ardehali-Belinskii-Klyshko inequalities may not always be optimal for refutation of local realistic description.
description: 4 pages, journal version
Social (In)Visibility and Disease Performativity: Qualitative Insights From Two US Case Studies
Creators: name: Spratt, Tanisha Jemma Rose
Publisher: name: Apollo - University of Cambridge Repository
Year: 2019
Subjects: invisibility
performativity
health

description: This thesis centres on questions of (in)visibility in the lives of US “patients” with one of two chronic diseases (alkaptonuria and vitiligo). Specifically, it explores the role that social (in)visibility plays in the everyday lives of “patients” from both disease groups who experience their disease in relation to other social identities that they simultaneously occupy (including race, class and gender. In this thesis I conceptualise (in)visibility with respect to a wide range of issues related to the ways in which respondents exhibited and/ or failed to exhibit themselves and their diseases. Using grounded theory as a methodological framework, I collected data using a number of qualitative methods, including: semi-structured in-depth interviews, two ethnographies that took place at patient workshops in the US and the UK, and participant observation. This thesis consists of 4 empirical chapters that centre on issues pertaining to stigma, passing, pain and personal responsibility. Each of these issues is deeply embedded within narratives of how participants conceptualised their experiences of being “seen” and “unseen” in relation to their diseases, and speak to how those feelings are, in turn, informed by their disease’s relative (in)visibility. The first chapter, “Experiencing Stigma: Narratives of Precarity, Vulnerability and Loss,” details the ways in which participants are routinely stigmatised because of their disease, and how their anticipation of stigma affects them on an everyday basis. The second chapter outlines the ways in which participants seek to conceal their disease from the public by masking their symptoms and/ or drawing attention away from them through the use of external objects. The third chapter considers pain as a non-visual signifier of “illness,” and explores the ways in which experiences of being “seen” and/ or “unseen” in relation to their condition influences the participant’s understandings of pain. My final empirical chapter considers how contemporary assumptions about the individual’s ability to take responsibility for their health overlooks the financial, social and political restrictions that render many incapable of doing so. As a result, I argue that the individual is “invisibilised” within a system that stresses a need for personal responsibility whilst overlooking the individual’s (in)capacity to assume it.
description: Fully funded by the Economic and Social Research Council (ESRC)
What are Managers’ Experiences of Managing Staff Teams with Experiences of Racism in Homeless Services?
Creators: name: Sheardown, Jennifer
Publisher: name: Lancaster University
Year: 2025

description: This thesis explores how managers of homeless services manage experiences
 of

 racism among their staff teams. It comprises of four parts: a literature
 review, research paper, critical appraisal and ethics section. The
 literature review is a thematic synthesis of racialised social worker’s
 experiences of racism in the social work sector. Data from 12 papers were
 synthesised using a thematic synthesis approach, producing five themes: 1.
 Discriminatory treatment, 2. Strain on resources, 3. Complexities of
 identity and role, 4. Oppressive whiteness, and 5. Strengths, values and
 resistance. Findings indicate racialised social workers experience
 oppressive treatment, leading to a drain on resources and difficulties
 navigating their position in the profession. White peers enact defensive
 mechanisms creating barriers to change, and structural racism impedes
 appropriate anti-racist teaching and practice. Recommendations include
 increased support for racialised social workers, exploration of

 institutional whiteness, and greater accountability within leadership to
 instigate change. The empirical paper explores how managers manage
 experiences of racism in their staff teams in homeless services. Nine
 managers of homeless services participated in individual, semistructured
 interviews. They were analysed using thematic analysis and generated three
 themes and two subthemes: 1. Structural barriers, 1.1. Vague frameworks,
 1.2. Whiteness in

 services, 2. (Mis)understandings of racism, and 3. White ignorance.
 Findings indicate guidelines to manage racism are vague and understanding
 of the complexities of racism are not captured within leadership.
 Recommendations include developing and embedding antidiscrimination
 policies and practices and recognition within homeless services of how
 whiteness manifests. The critical appraisal explores the broader context
 of psychology and

 racism in Britain, my whiteness, terminology, and analysis of the research
 process.
Evidence for He I 10830 Å~ absorption during the transit of a warm Neptune around the M-dwarf GJ 3470 with the Habitable-zone Planet Finder
Creators: name: Ninan, Joe P.
name: Stefansson, Gudmundur
name: Mahadevan, Suvrath
name: Bender, Chad
name: Robertson, Paul
name: Ramsey, Lawrence
name: Terrien, Ryan
name: Wright, Jason
name: Diddams, Scott A.
name: Kanodia, Shubham
name: Cochran, William
name: Endl, Michael
name: Ford, Eric B.
name: Fredrick, Connor
name: Halverson, Samuel
name: Hearty, Fred
name: Jennings, Jeff
name: Kaplan, Kyle
name: Lubar, Emily
name: Metcalf, Andrew J.
name: Monson, Andrew
name: Nitroy, Colin
name: Roy, Arpita
name: Schwab, Christian
Publisher: name: arXiv
Year: 2019
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: Understanding the dynamics and kinematics of out-flowing atmospheres of hot and warm exoplanets is crucial to understanding the origins and evolutionary history of the exoplanets near the evaporation desert. Recently, ground based measurements of the meta-stable Helium atom's resonant absorption at 10830 Å~has become a powerful probe of the base environment which is driving the outflow of exoplanet atmospheres. We report evidence for the He I 10830 Å~in absorption (equivalent width $\sim$ $0.012 \pm 0.002$ Å) in the exosphere of a warm Neptune orbiting the M-dwarf GJ 3470, during three transits using the Habitable Zone Planet Finder (HPF) near infrared spectrograph. This marks the first reported evidence for He I 10830 Å\, atmospheric absorption for a planet orbiting an M-dwarf. Our detected absorption is broad and its blueshifted wing extends to -36 km/sec, the largest reported in the literature to date. We modelled the state of Helium atoms in the exosphere of GJ3470b based on assumptions on the UV and X-ray flux of GJ 3470, and found our measurement of flux-weighted column density of meta-stable state Helium $(N_{He^2_3S} = 2.4 \times 10^{10} \mathrm{cm^{-2}})$, derived from our transit observations, to be consistent with model, within its uncertainties. The methodology developed here will be useful to study and constrain the atmospheric outflow models of other exoplanets like GJ 3470b which are near the edge of the evaporation desert.
description: Accepted in ApJ
Discovery of a Methane Dwarf from the IfA-Deep Survey
Creators: name: Liu, Michael C.
name: Wainscoat, Richard
name: Martin, Eduardo L.
name: Barris, Brian
name: Tonry, John
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present the discovery of a distant methane dwarf, the first from the Institute for Astronomy (IfA) Deep Survey. The object ("IfA 0230-Z1") was identified from deep optical I and z'-band imaging, being conducted as an IfA-wide collaboration using the prime-focus imager Suprime-Cam on the Subaru 8.2-m Telescope. IfA 0230-Z1 is extremely red in the Iz'J (0.8--1.2 micron) bands but relatively blue in J-H; such colors are uniquely characteristic of T dwarfs. A near-IR spectrum taken with the Keck Telescope shows strong H2O absorption and a continuum break indicative of CH4, confirming the object has a very cool atmosphere. Comparison with nearby T dwarfs gives a spectral type of T3-T4 and a distance of ~45 pc. Simple estimates based on previous T dwarf discoveries suggest that the IfA survey will find a comparable number of T dwarfs as the 2MASS survey, albeit at a much larger average distance. We also discuss the survey's ability to probe the galactic scale height of ultracool (L and T) dwarfs.
description: Astrophysical Journal Letters, in press
Changing Computer Use in Agriculture: Evidence from Ohio
Creators: name: Batte, Marvin T.
name: Batte, Marvin T.
Publisher: name: Unknown
Year: 2004
Subjects: subject: Agribusiness
subject: Farm Management
subject: Computer adoption
subject: computer usefulness
subject: Probit analysis.

description: Farmers are continuing to expand their use of computers. This article reports analyses for a 2003 random sample of Ohio, USA farmers. Computer adoption by Ohio farmers currently stands at 44 percent, up from 32 percent in 1991. Financial accounting remains the most often used task of farm computers, with 89 percent of farmers reporting such usage. However, the use of the Internet for communication, for transactions processing, or for information retrieval more broadly, is an application that was largely unavailable in 1991, and which is now used by about 80 percent of the farmers sampled. A binomial Probit model was formulated to determine those farm and farmer characteristics that influence farmers' decisions to adopt an office computer. Likelihood of computer adoption was found to increase with increased farm size (annual sales) and higher operator education. Younger farmers were significantly more like to adopt the computer. Adoption percent was higher on farms that were more reliant on leased land, and was lower for livestock farmers. Farmers who worked year-around away from the farm were more likely to adopt a computer for the farm business. A second binomial Probit model was formulated to identify those farmer characteristics associated with higher manager evaluations of the computer as a management tool. Likelihood of above average computer usefulness evaluations rose with increased farm annual gross sales, diminished with increased age of the operator, and were higher for farmers who used the computer for financial or production recordkeeping or who gathered information from the Internet.
On the Heating of the Solar Corona and the Acceleration of the Low-Speed Solar Wind by Acoustic Waves Generated in Corona
Creators: name: Suzuki, Takeru Ken
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We investigate possibilities of solar coronal heating by acoustic waves generated not at the photosphere but in the corona, aiming at heating in the mid- to low-latitude corona where the low-speed wind is expected to come from. Acoustic waves of period tau ~ 100s are triggered by chromospheric reconnection, one model of small scale magnetic reconnection events recently proposed by Sturrock. These waves having a finite amplitude eventually form shocks to shape sawtooth waves (N-waves), and directly heat the surrounding corona by dissipation of their wave energy. Outward propagation of the N-waves is treated based on the weak shock theory, so that the heating rate can be evaluated consistently with physical properties of the background coronal plasma without setting a dissipation length in an ad hoc manner. We construct coronal structures from the upper chromosphere to the outside of 1AU for various inputs of the acoustic waves having a range of energy flux of F_{w,0} = (1-20) times 10^5 erg cm^{-2} s^{-1} and a period of tau = 60-300s. The heating by the N-wave dissipation effectively works in the inner corona and we find that the waves of F_{w,0} >= 2 times 10^5 erg cm^{-2} s^{-1} and tau >= 60s could maintain peak coronal temperature, T_{max} > 10^6 K. The model could also reproduce the density profile observed in the streamer region. However, due to its short dissipation length, the location of T_{max} is closer to the surface than the observation, and the resultant flow velocity of the solar wind is lower than the observed profile of the low-speed wind. The cooperations with other heating and acceleration sources with the larger dissipation length are inevitable to reproduce the real solar corona.
description: 32 pages, including 10 figures, ApJ vol.578, in press (v2 : corrections of mis-typed 'fmax' values in the tables 1 & 2)
"Where are you from?" Race, class and situational migratisation
Creators: name: Mikoshiba, Sayaka
Publisher: name: Lancaster University
Year: 2025

description: This study investigates the experiences of racially minoritised adults
 with internationally mobile upbringings due to their parents’ work, with a
 particular focus on their experiences of the question, “Where are you
 from?”. Based on inductive analysis of 24 biographical narrative
 interviews incorporating music elicitation and conducted longitudinally
 with eight, racially minoritised and ethnically diverse individuals over
 an 11-month period, this study identifies “Where are you from?” as an
 instance of migratisation, or the construction of migrant subjects who are
 framed as out of place and belonging elsewhere. The study reveals that
 processes of migratisation are both racialised and classed, underwritten
 by contestations of the legitimacy of cultural capitals in their
 embodiment. Race and class operate intersectionally in mediating the
 degrees to which cultural capitals embodied by racially minoritised
 subjects are recognised as symbolic capital. Furthermore, by examining how
 participants’ cultural capitals are evaluated differently in different
 contexts globally, thus triggering migratisation in context-specific ways,
 this study argues that migratisation is situational. It proposes the
 concept of situational migratisation, or the context-dependent ways in
 which race and class intersect in contestations of the legitimacy of
 cultural capitals in their embodiments, triggering migratisation, or the
 construction of the capitals’ owners as migrant figures belonging
 elsewhere. Making visible the experiences of a population largely elided
 in studies on privilege in migration, this study contributes to a
 theorisation of privilege in migration as relational, situational and
 contingent.
Light-front field theories at finite temperature
Creators: name: Alves, V. S.
name: Das, Ashok
name: Perez, Silvana
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We study the question of generalizing light-front field theories to finite temperature. We show that the naive generalization has serious problems and we identify the source of the difficulty. We provide a proper generalization of these theories to finite temperature based on a relativistic description of thermal field theories, both in the real and the imaginary time formalisms. Various issues associated with scalar and fermion theories, such as non-analyticity of self-energy, tensor decomposition are discussed in detail.
description: 11 pages, 4 figures, Revtex4
Additional file 8 of Measuring and modeling energy and power consumption in living microbial cells with a synthetic ATP reporter
Creators: name: Yijie Deng
name: Beahm, Douglas Raymond
name: Ionov, Steven
name: Sarpeshkar, Rahul
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences

description: Additional file 8: Table S1. Model parameters for E. coli strain BW25113 grown in minimal medium.The values of KS, tlag and kLa are supported by the references [88–90], respectively.
MHD consistent cellular automata (CA) models I: Basic features
Creators: name: Isliker, H.
name: Anastasiadis, A.
name: Vlahos, L.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: A set-up is introduced which can be superimposed onto the existing solar flare cellular automata (CA) models, and which specifies the interpretation of the model's variables. It extends the CA models, yielding the magnetic field, the current, and an approximation to the electric field, in a way that is consistent with Maxwell's and the MHD equations. Applications to several solar flare CA models during their natural state (self-organized criticality (SOC)) show, among others, that (1) the magnetic field exhibits characteristic large-scale organization over the entire modeled volume; (2) the magnitude of the current seems spatially dis-organized, with no obvious tendency towards large-scale structures or even local organization; (3) bursts occur at sites with increased current, and after a burst the current is relaxed; (4) by estimating the energy released in individual bursts with the use of the current as Ohmic dissipation, it turns out that the power-law distributions of the released energy persist. The CA models, extended with the set-up, can thus be considered as models for energy-release through current-dissipation. The concepts of power-law loading and anisotropic events (bursts) in CA models are generalized to 3--D vector-field models, and their effect on the magnetic field topology is demonstrated.
description: 12 pages, 9 figures
Putting Their Money Where Their Mouths Are: Consumer Willingness to Pay for Multi-Ingredient, Processed Organic Food Products
Creators: name: Batte, Marvin T.
name: Hooker, Neal H.
name: Haab, Timothy C.
name: Beaverson, Jeremy
name: Batte, Marvin T.
name: Hooker, Neal H.
name: Haab, Timothy C.
name: Beaverson, Jeremy
Publisher: name: Unknown
Year: 2006
Subjects: subject: Consumer/Household Economics
subject: Demand and Price Analysis
subject: Food Consumption/Nutrition/Food Safety
subject: Multi-ingredient processed organic food
subject: National Organic Program
subject: consumer intercept survey
subject: willingness to pay
subject: WTP

description: In response to dramatically increasing adoption in consumer markets, the National Organic Program (NOP) initiated novel labeling standards for food products in the U.S. in 2002. This program is a particularly relevant standardization effort for multi-ingredient processed foods. Rather than a simple binary message (organic or not), gradations of organic content are now codified. No existing published study evaluates consumer willingness to pay or motivation to purchase in response to such a rich organic label. This article presents evidence of the impact of the NOP through analysis of data collected in seven central Ohio, USA grocery stores. Results suggest that consumers are willing to pay premium prices for organic foods, even those with less than 100 percent organic ingredients. The magnitudes of WTP premia varied significantly among consumer groups, suggesting that targeted marketing may be effective for organic merchandisers.