cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Anamixis bazimut Thomas 1997
Creators: name: White, Kristine N.
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Amphipoda
Leucothoidae
Anamixis
Anamixis bazimut

description: Anamixis bazimut Thomas, 1997
 Anamixis bazimut Thomas, 1997: 45–47, fig. 2. — Lowry & Stoddart, 2003: 154. — White & Thomas, 2009: 495–498, figs 1, 2.
 Type locality and specimens. Tab Anchorage, Madang, Papua New Guinea. Holotype, anamorph male, 2.87 mm, USNM 2433180; paratypes, anamorph males, 2.68 mm, 2.80 mm, and 2.31 mm, USNM 239493.
 Material examined. 10 anamorph males, AM P70802, AM P70977, AM P71542, AM P71505 GCRL 2882, GCRL 2883, AM P79867. Diagnosis based on description by White & Thomas (2009).
 Diagnosis. Large ventral keel projecting well below head with the anterior margin transverse and the ventral margin with an anteroventrally directed tooth. Coxa 2–4 subequal in size; coxa 2 middistal margin produced.
 Leucomorph (juvenile/sexually dimorphic characters). Unknown.
 Habitat. Among Halimeda J.V.F. Lamouroux, 1812, coral rubble and sandy bottoms; 1– 3 m.
 Host. Sponges, small asconoid sponges.
 Distribution. Pacific Ocean: Lizard Island to Orpheus Island, Australia (White & Thomas 2009). Bismark Sea: Madang Lagoon, Papua New Guinea (Thomas 1997; Lowry & Stoddart 2003).
description: Published as part of White, Kristine N., 2011, A taxonomic review of the Leucothoidae (Crustacea: Amphipoda) 3078, pp. 1-113 in Zootaxa 3078 (1) on page 16, DOI: 10.11646/zootaxa.3078.1.1, http://zenodo.org/record/5243821
MOESM4 of Genetic diversity in India and the inference of Eurasian population expansion
Creators: name: Xing, Jinchuan
name: Watkins, W
name: Hu, Ya
name: Huff, Chad
name: Sabo, Aniko
name: Muzny, Donna
name: Bamshad, Michael
name: Gibbs, Richard
name: Jorde, Lynn
name: Yu, Fuli
Publisher: name: figshare
Year: 2019
Subjects: subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Authorsâ original file for figure 3
Technical Change, Productivity, and Sustainability in Irrigated Cropping Systems of South Asia: Emerging Issues in the Post-Green Revolution Era
Creators: name: Byerlee, Derek
name: Byerlee, Derek
Publisher: name: Unknown
Year: 1990
Subjects: Agricultural and Food Policy
Crop Production/Industries

description: Recent trends in South Asia's irrigated cropping systems are analyzed, giving particular attention to systems in which wheat is an important crop. Much of the recent success in increasing food production In South Asia is due to success in wheat production. The paper presents an overview of the stages of technical and Institutional changes in South Asian agriculture from the pre-Green Revolution era through to the current post-Green Revolution stage. The paper then identifies emerging problems, both technical and institutional, which will Impinge on the ability to maintain gains in food grain productivity and sustain the resource base over the next 10-20 years. A new strategy Is proposed to ensure productivity increases in South Asian cropping systems in the future. This strategy not only implies profound changes in agricultural research priorities, but also in the institutions that foster technical change in agriculture.
MOESM1 of Spatial and temporal disease dynamics of the parasite Hematodinium sp. in shore crabs, Carcinus maenas
Creators: name: Davies, Charlotte
name: Batista, Frederico
name: Malkin, Sophie
name: Thomas, Jessica
name: Bryan, Charlotte
name: Crocombe, Peter
name: Coates, Christopher
name: Rowley, Andrew
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Table S1. Full model used in order to predict response variable of presence of Hematodinium sp. before reduction. Asterisk denotes significance (P ≤ 0.05). Table S2. Full model used in order to predict response variable of presence of Hematodinium sp. in the Dock location before reduction. Asterisk denotes significance (P ≤ 0.05). Table S3. Full model used in order to predict response variable of presence of Hematodinium sp. in the Pier location before reduction. Asterisk denotes significance (P ≤ 0.05). Table S4. Accession numbers, deposited in GenBank, and corresponding sampling numbers for all Hematodinium-positive animals successfully sequenced from study, and used in the phylogenetic tree (Fig. 7).
GEM BIOSINTEZI STIMULYATORLARI ORQALI YURAK YETISHMOVCHILIGINING KORREKSIYASI
Creators: name: Shuxratov, Alisher
Publisher: name: Zenodo
Year: 2025

description: Yurak yetishmovchiligi (YY)  sog‘liqni saqlash muammolaridan biri bo‘lib, uning kelib chiqishi oksidlovchi stress, metabolik disbalans va energiya yetishmovchiligi sabab bo’ladi. Gem biosintezi yurak mushak hujayralarida kislorod tashish, energetik metabolism, oksidlanish-fosforillanishni ta’minlashda asosiy ahamiyatga ega. Gem biosintezining buzilishi mitoxondriyal disfunksiya va ATP ishlab chiqarishning pasayishiga olib keladi va bu orqali YY rivojlanishini tezlashtiradi. Shuning uchun, gem biosintezini stimulyatsiya qiluvchi farmakologik vositalarni qo‘llash YY farmakoterapiyasida istiqbolli yo‘nalishlardan biri hisoblanadi.
Observation of spin-orbit excitations and Hund's multiplets in Ca$_2$RuO$_4$
Creators: name: Gretarsson, H.
name: Suzuki, H.
name: Kim, Hoon
name: Ueda, K.
name: Krautloher, M.
name: Kim, B. J.
name: Yavaş, H.
name: Khaliullin, G.
name: Keimer, B.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We use Ru $L_3$-edge (2838.5 eV) resonant inelastic x-ray scattering (RIXS) to quantify the electronic structure of Ca$_2$RuO$_4$, a layered $4d$-electron compound that exhibits a correlation-driven metal-insulator transition and unconventional antiferromagnetism. We observe a series of Ru intra-ionic transitions whose energies and intensities are well described by model calculations. In particular, we find a $\rm{J}=0\rightarrow 2$ spin-orbit excitation at 320 meV, as well as Hund's-rule driven $\rm{S}=1\rightarrow 0$ spin-state transitions at 750 and 1000 meV. The energy of these three features uniquely determines the spin-orbit coupling, tetragonal crystal-field energy, and Hund's rule interaction. The parameters inferred from the RIXS spectra are in excellent agreement with the picture of excitonic magnetism that has been devised to explain the collective modes of the antiferromagnetic state. $L_3$-edge RIXS of Ru compounds and other $4d$-electron materials thus enables direct measurements of interactions parameters that are essential for realistic model calculations.
description: 9 pages and 4 figures. accepted in PRB
Pituitary society guidance: pituitary disease management and patient care recommendations during the COVID-19 pandemic—an international perspective
Creators: name: Fleseriu, Maria
name: Buchfelder, Michael
name: Cetas, Justin S.
name: Fazeli, Pouneh K.
name: Mallea-Gil, Susana M.
name: Gurnell, Mark
name: McCormack, Ann
name: Pineyro, Maria M.
name: Syro, Luis V.
name: Tritos, Nicholas A.
name: Marcus, Hani J.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article
SARS-CoV-2
COVID-19
Pituitary disease and surgery
Cushing’s disease
Acromegaly
Prolactinomas

description: Abstract: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the viral strain that has caused the coronavirus disease 2019 (COVID-19) pandemic, has presented healthcare systems around the world with an unprecedented challenge. In locations with significant rates of viral transmission, social distancing measures and enforced ‘lockdowns’ are the new ‘norm’ as governments try to prevent healthcare services from being overwhelmed. However, with these measures have come important challenges for the delivery of existing services for other diseases and conditions. The clinical care of patients with pituitary disorders typically involves a multidisciplinary team, working in concert to deliver timely, often complex, disease investigation and management, including pituitary surgery. COVID-19 has brought about major disruption to such services, limiting access to care and opportunities for testing (both laboratory and radiological), and dramatically reducing the ability to safely undertake transsphenoidal surgery. In the absence of clinical trials to guide management of patients with pituitary disease during the COVID-19 pandemic, herein the Professional Education Committee of the Pituitary Society proposes guidance for continued safe management and care of this population.
The receptor PTPRU is a redox sensitive pseudophosphatase
Creators: name: Hay, Iain M.
name: Fearnley, Gareth W.
name: Rios, Pablo
name: Köhn, Maja
name: Sharpe, Hayley J.
name: Deane, Janet E.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article
/631/45/173
/631/45/607/1164
/631/337/458/1733
/631/535/1266
/101
/82/16
/82/80
/82/83
/96/106
/96/109
/145
/38/70
article

description: Abstract: The receptor-linked protein tyrosine phosphatases (RPTPs) are key regulators of cell-cell communication through the control of cellular phosphotyrosine levels. Most human RPTPs possess an extracellular receptor domain and tandem intracellular phosphatase domains: comprising an active membrane proximal (D1) domain and an inactive distal (D2) pseudophosphatase domain. Here we demonstrate that PTPRU is unique amongst the RPTPs in possessing two pseudophosphatase domains. The PTPRU-D1 displays no detectable catalytic activity against a range of phosphorylated substrates and we show that this is due to multiple structural rearrangements that destabilise the active site pocket and block the catalytic cysteine. Upon oxidation, this cysteine forms an intramolecular disulphide bond with a vicinal “backdoor” cysteine, a process thought to reversibly inactivate related phosphatases. Importantly, despite the absence of catalytic activity, PTPRU binds substrates of related phosphatases strongly suggesting that this pseudophosphatase functions in tyrosine phosphorylation by competing with active phosphatases for the binding of substrates.
MOESM3 of MetaCell: analysis of single-cell RNA-seq data using K-nn graph partitions
Creators: name: Baran, Yael
name: Akhiad Bercovich
name: Arnau Sebe-Pedros
name: Lubling, Yaniv
name: Giladi, Amir
name: Chomsky, Elad
name: Meir, Zohar
name: Hoichman, Michael
name: Aviezer Lifshitz
name: Tanay, Amos
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology

description: Additional file 3. Two strategies for selection of feature genes used in the MetaCell package. (DOCX 14 kb)
Employing a MEMS plasma switch for conditioning high-voltage kinetic energy harvesters
Creators: name: Zhang, Hemin
name: Marty, Frédéric
name: Xia, Xin
name: Zi, Yunlong
name: Bourouina, Tarik
name: Galayko, Dimitri
name: Basset, Philippe
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article
/639/4077/4072
/639/166/987
/120
/142/126
/144
/147/135
article

description: Abstract: Triboelectric nanogenerators have attracted wide attention due to their promising capabilities of scavenging the ambient environmental mechanical energy. However, efficient energy management of the generated high-voltage for practical low-voltage applications is still under investigation. Autonomous switches are key elements for improving the harvested energy per mechanical cycle, but they are complicated to implement at such voltages higher than several hundreds of volts. This paper proposes a self-sustained and automatic hysteresis plasma switch made from silicon micromachining, and implemented in a two-stage efficient conditioning circuit for powering low-voltage devices using triboelectric nanogenerators. The hysteresis of this microelectromechanical switch is controllable by topological design and the actuation of the switch combines the principles of micro-discharge and electrostatic pulling, without the need of any power-consuming control electronic circuits. The experimental results indicate that the energy harvesting efficiency is improved by two orders of magnitude compared to the conventional full-wave rectifying circuit.
Anamixis cavatura
Creators: name: White, Kristine N.
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Amphipoda
Leucothoidae
Anamixis
Anamixis cavatura

description: Anamixis cavatura (Thomas, 1997)
 Anamixis hanseni Pearse, 1912: 370. — Thomas, 1979: 107–109. — Thomas & Taylor, 1981: 462–467, figs 1–5. — Thomas & Barnard, 1983: 154–157 (not Stebbing 1897).
 Leucothoides pottsi Shoemaker, 1933a: 249–251, fig. 3. — Ledoyer 1967a: 127, fig. 5b. — Ruffo, 1969: 12, 13. — Sivaprakasam, 1967 (1969): 373, figs 1E–G. — Ledoyer, 1978b: 375. — Ledoyer, 1978a: 300, 301. — Ledoyer, 1979a: 169. — Ledoyer, 1979b: 111, fig. 68(II). — Thomas, 1979: 107–109. —J.L. Barnard, 1979: 130.
 Anamixis pottsi. — Ortiz & Lemaitre, 1994: 124.
 Anamixis cavatura Thomas, 1997: 47–50, figs 3, 4. — White, 2011: 25, fig.1.
 Type locality and specimens. Carrie Bow Cay, Belize. Holotype, anamorph male, 2.39 mm, USNM 253729; paratypes, anamorph male, 4.60 mm, USNM 253730, leucomorph male, 4.41 mm, USNM 253732, leucomorph female, 3.28 mm, USNM 253733.
 Material examined. 5 anamorph males (JDT Bel 06–3B). Diagnosis based on description by Thomas (1997).
 Diagnosis. Distal triangular locking process on gnathopod 2 basis; 3–5 prominent cusps on propodus; tuberculate dactylus.
 Leucomorph (juvenile/sexually dimorphic characters). Male or female. Head anterior margin truncate, anterodistal margin quadrate. Ventral cephalic keel anterior margin transverse. Gnathopod 1 carpus length 12.5 x width, proximal margin dentate, with multiple setae/spines and terminal serrate blades; dactylus very short. Gnathopod 2 carpus 0.5 x propodus length, straight, distally truncate; propodus palm sub-rectangular; dactylus reaching 0.5–0.7 x propodus length. Uropods 1–3 relative lengths 1.0: 0.7: 0.9.
 Habitat. Among coral rubble; 1–5 m.
 Host. Small asconoid sponges and colonial ascidians, especially Ecteinascidia turbinata Herdman, 1880.
 Distribution. Western Atlantic Ocean: Ft. Pierce to the Florida Keys, Florida (Shoemaker 1933; Thomas 1979; Thomas & Taylor 1981). Gulf of Mexico: Mississippi Delta to Tampa, FL (Pearse 1912). Caribbean Sea: Yucatan, Belize, Honduras, Jamaica, The Bahamas, Greater and Lesser Antilles, Panama (Thomas & Barnard 1983; Ortiz & Lemaitre 1994; White 2011).
description: Published as part of White, Kristine N., 2011, A taxonomic review of the Leucothoidae (Crustacea: Amphipoda) 3078, pp. 1-113 in Zootaxa 3078 (1) on pages 16-17, DOI: 10.11646/zootaxa.3078.1.1, http://zenodo.org/record/5243821
Final-state interactions in the response of nuclear matter
Creators: name: Petraki, M.
name: Mavrommatis, E.
name: Benhar, O.
name: Clark, J. W.
name: Fabrocini, A.
name: Fantoni, S.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Final-state interactions in the response of a many-body system to an external probe delivering large momentum are normally described using the eikonal approximation, for the trajectory of the struck particle, and the frozen approximation, for the positions of the spectators. We propose a generalization of this scheme, in which the initial momentum of the struck particle is explicitly taken into account. Numerical calculations of the nuclear matter response at 1 $< |{\bf q}|
description: 21 pages, 4 figures
TA'LIM TIZIMIDA GENDER TENGLIGINI TA'MINLASH MASALALARI
Creators: name: Qudratova, Shakhnoza Bakhtiyor kizi
name: Djumatova, Hilola Xamrayevna
Publisher: name: Zenodo
Year: 2025

description: Ushbu maqolada ta’lim va ilm-fan sohalarida gender faoliyati tahlil qilingan, xorijiy mamlakatlarning ta’lim va ilm-fan gender rolini oshirish bo‘yicha tajribalari o‘rganilgan hamda ulardagi ilg‘or tajribalarni mamlakatimizga tatbiq etish bo‘yicha ilmiy taklif va amaliy tavsiyalar ishlab chiqilgan.
Additional studies of the probability that the events with a superjet observed by CDF are consistent with the SM prediction
Creators: name: Apollinari, G.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: In the $\W+$ 2,3 jet data collected by CDF during the 1992-1995 Fermilab collider run, 13 events were observed to contain a superjet when $4.4 \pm 0.6$ events are expected. A previous article detailed the selection and the kinematical properties of these events. The present paper provides estimates of the probability that the kinematics of these 13 events is statistically consistent with the standard model prediction.
description: 9 pages, 2 tables, 3 figures
Distal lung epithelial progenitor cell function declines with age
Creators: name: Watson, Julie K.
name: Sanders, Philip
name: Dunmore, Rebecca
name: Rosignoli, Guglielmo
name: Julé, Yvon
name: Rawlins, Emma L.
name: Mustelin, Tomas
name: May, Richard
name: Clarke, Deborah
name: Finch, Donna K.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article
/631/532/7
/631/532/1360
/64/60
/13/51
/38/61
/14/19
article

description: Funder: MedImmune; doi: https://doi.org/10.13039/501100004628
description: Abstract: Tissue stem cell exhaustion is a key hallmark of aging, and in this study, we characterised its manifestation in the distal lung. We compared the lungs of 3- and 22-month old mice. We examined the gross morphological changes in these lungs, the density and function of epithelial progenitor populations and the epithelial gene expression profile. Bronchioles became smaller in their cross-sectional area and diameter. Using long-term EdU incorporation analysis and immunohistochemistry, we found that bronchiolar cell density remained stable with aging, but inferred rates of bronchiolar club progenitor cell self-renewal and differentiation were reduced, indicative of an overall slowdown in cellular turnover. Alveolar Type II progenitor cell density and self-renewal were maintained per unit tissue area with aging, but rates of inferred differentiation into Type I cells, and indeed overall density of Type I cells was reduced. Microarray analysis revealed age-related changes in multiple genes, including some with roles in proliferation and differentiation, and in IGF and TGFβ signalling pathways. By characterising how lung stem cell dynamics change with aging, this study will elucidate how they contribute to age-related loss of pulmonary function, and pathogenesis of common age-related pulmonary diseases.
Broadband aperiodic variability in X-ray pulsars: accretion rate fluctuations propagating under the influence of viscous diffusion
Creators: name: Mushtukov, Alexander A.
name: Lipunova, Galina V.
name: Ingram, Adam
name: Tsygankov, Sergey S.
name: Mönkkönen, Juhani
name: van der Klis, Michiel
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: We investigate aperiodic X-ray flux variability in accreting highly magnetized neutron stars - X-ray pulsars (XRPs). The X-ray variability is largely determined by mass accretion rate fluctuations at the NS surface, which replicate accretion rate fluctuations at the inner radius of the accretion disc. The variability at the inner radius is due to fluctuations arising all over the disc and propagating inwards under the influence of viscous diffusion. The inner radius varies with mean mass accretion rate and can be estimated from the known magnetic field strength and accretion luminosity of XRPs. Observations of transient XRPs covering several orders of magnitude in luminosity give a unique opportunity to study effects arising due to the changes of the inner disc radius. We investigate the process of viscous diffusion in XRP accretion discs and construct new analytical solutions of the diffusion equation applicable for thin accretion discs truncated both from inside and outside. Our solutions are the most general ones derived in the approximation of Newtonian mechanics. We argue that the break observed at high frequencies in the power density spectra of XRPs corresponds to the minimal time scale of the dynamo process, which is responsible for the initial fluctuations. Comparing data from the bright X-ray transient A 0535+26 with our model, we conclude that the time scale of initial variability in the accretion disc is a few times longer than the local Keplerian time scale.
description: 14 pages, 12 figures, accepted for publication in MNRAS
THE ROLE OF LAW ENFORCEMENT, COURTS, AND CORRECTIONAL INSTITUTIONS IN CRIMINAL JUSTICE IN MOGADISHU, SOMALIA
Creators: name: ALI, MOHAMOUD MOHAMED
Publisher: name: Zenodo
Year: 2025

description:                                       ABSTRACT

The functions of law enforcement, courts, and correctional institutions within this framework have adapted to mirror changing societal values, legal theories, and responses to the challenges presented by criminal behaviour. (Carter, 1990)

Objective: Examining the distinct responsibilities of each pillar, including prevention, investigation, adjudication, sentencing, and rehabilitation, highlighting how their actions interweave and impact one another, forming a complete criminal justice system., Acknowledging the existing issues within the system, such as disparities and access to justice, and exploring potential solutions and ongoing reform efforts.

Methodology: his research study will be cross-sectional, descriptive, and quantitative, and the research method of data collection, Cross-sectional study, makes it easier to collect data on the entire study population at a single point in time to examine the relationship between Criminal Justice outcomes and other variables of interest (exposures)
The MiDAC histone deacetylase complex is essential for embryonic development and has a unique multivalent structure
Creators: name: Turnbull, Robert E.
name: Fairall, Louise
name: Saleh, Almutasem
name: Kelsall, Emma
name: Morris, Kyle L.
name: Ragan, T. J.
name: Savva, Christos G.
name: Chandru, Aditya
name: Millard, Christopher J.
name: Makarova, Olga V.
name: Smith, Corinne J.
name: Roseman, Alan M.
name: Fry, Andrew M.
name: Cowley, Shaun M.
name: Schwabe, John W. R.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article
/631/45/612/100/2285
/631/80/641/1655
/631/136/2086
/631/337/572
/631/535/1258/1259
/101/28
/64/60
/13/1
/13/31
/13/106
/14/19
/38/39
/38/91
article

description: Abstract: MiDAC is one of seven distinct, large multi-protein complexes that recruit class I histone deacetylases to the genome to regulate gene expression. Despite implications of involvement in cell cycle regulation and in several cancers, surprisingly little is known about the function or structure of MiDAC. Here we show that MiDAC is important for chromosome alignment during mitosis in cancer cell lines. Mice lacking the MiDAC proteins, DNTTIP1 or MIDEAS, die with identical phenotypes during late embryogenesis due to perturbations in gene expression that result in heart malformation and haematopoietic failure. This suggests that MiDAC has an essential and unique function that cannot be compensated by other HDAC complexes. Consistent with this, the cryoEM structure of MiDAC reveals a unique and distinctive mode of assembly. Four copies of HDAC1 are positioned at the periphery with outward-facing active sites suggesting that the complex may target multiple nucleosomes implying a processive deacetylase function.
Supplementary document for Single-layer graphene optical modulator based on arrayed hybrid plasmonic nanowires - 5412902.pdf
Creators: name: Li, Zhikai
name: Huang, Jiyuan
name: Zhao, Zhuohang
name: Wang, Yu-lin
name: Huang, Cheng-ping
name: Zhang, Yong
Publisher: name: Optica Publishing Group
Year: 2021
Subjects: Uncategorized

description: latex for Supplemental document
Measurement of the $\mathrm{t\bar{t}}\mathrm{b\bar{b}}$ production cross section in the all-jet final state in pp collisions at $\sqrt{s} =$ 13 TeV
Creators: name: CMS Collaboration
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: A measurement of the production cross section of top quark pairs in association with two b jets ($\mathrm{t\bar{t}}\mathrm{b\bar{b}}$) is presented using data collected in proton-proton collisions at $\sqrt{s} =$ 13 TeV by the CMS detector at the LHC corresponding to an integrated luminosity of 35.9 fb$^{-1}$. The cross section is measured in the all-jet decay channel of the top quark pair by selecting events containing at least eight jets, of which at least two are identified as originating from the hadronization of b quarks. A combination of multivariate analysis techniques is used to reduce the large background from multijet events not containing a top quark pair, and to help discriminate between jets originating from top quark decays and other additional jets. The cross section is determined for the total phase space to be 5.5 $\pm$ 0.3 (stat) ${}^{+1.6}_{-1.3}$ (syst) pb and also measured for two fiducial $\mathrm{t\bar{t}}\mathrm{b\bar{b}}$ definitions. The measured cross sections are found to be larger than theoretical predictions by a factor of 1.5-2.4, corresponding to 1-2 standard deviations.
description: Replaced with the published version. Added the journal reference. All the figures and tables can be found at http://cms-results.web.cern.ch/cms-results/public-results/publications/TOP-18-011 (CMS Public Pages)
Additional file 1 of Enhancer RNA commits osteogenesis via microRNA-3129 expression in human bone marrow-derived mesenchymal stem cells
Creators: name: Nguyen, Anh Phuong
name: Yamagata, Kaoru
name: Iwata, Shigeru
name: Trimova, Gulzhan
name: Zhang, Tong
name: Shan, Yu
name: Nguyen, Mai-Phuong
name: Sonomoto, Koshiro
name: Nakayamada, Shingo
name: Kato, Shigeaki
name: Tanaka, Yoshiya
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Supplementary Table S1. Sequences of the primers used to detect eRNAs.
Multimodal non-invasive assessment of intracranial hypertension: an observational study
Creators: name: Robba, Chiara
name: Pozzebon, Selene
name: Moro, Bedrana
name: Vincent, Jean-Louis
name: Creteur, Jacques
name: Taccone, Fabio Silvio
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Research
Neuro-ICU
Non-invasive intracranial pressure
Brain injury
Pupillometer
Optic nerve sheath diameter

description: Abstract: Background: Although placement of an intra-cerebral catheter remains the gold standard method for measuring intracranial pressure (ICP), several non-invasive techniques can provide useful estimates. The aim of this study was to compare the accuracy of four non-invasive methods to assess intracranial hypertension. Methods: We reviewed prospectively collected data on adult intensive care unit (ICU) patients with traumatic brain injury (TBI), subarachnoid hemorrhage (SAH), or intracerebral hemorrhage (ICH) in whom invasive ICP monitoring had been initiated and estimates had been simultaneously collected from the following non-invasive indices: optic nerve sheath diameter (ONSD), pulsatility index (PI), estimated ICP (eICP) using transcranial Doppler, and the neurological pupil index (NPI) measured using automated pupillometry. Intracranial hypertension was defined as an invasively measured ICP > 20 mmHg. Results: We studied 100 patients (TBI = 30; SAH = 47; ICH = 23) with a median age of 52 years. The median invasively measured ICP was 17 [12–25] mmHg and intracranial hypertension was present in 37 patients. Median values from the non-invasive techniques were ONSD 5.2 [4.8–5.8] mm, PI 1.1 [0.9–1.4], eICP 21 [14–29] mmHg, and NPI 4.2 [3.8–4.6]. There was a significant correlation between all the non-invasive techniques and invasive ICP (ONSD, r = 0.54; PI, r = 0.50; eICP, r = 0.61; NPI, r = − 0.41—p < 0.001 for all). The area under the curve (AUC) to estimate intracranial hypertension was 0.78 [CIs = 0.68–0.88] for ONSD, 0.85 [95% CIs 0.77–0.93] for PI, 0.86 [95% CIs 0.77–0.93] for eICP, and 0.71 [95% CIs 0.60–0.82] for NPI. When the various techniques were combined, the highest AUC (0.91 [0.84–0.97]) was obtained with the combination of ONSD with eICP. Conclusions: Non-invasive techniques are correlated with ICP and have an acceptable accuracy to estimate intracranial hypertension. The multimodal combination of ONSD and eICP may increase the accuracy to estimate the occurrence of intracranial hypertension.
Fbxl17 is rearranged in breast cancer and loss of its activity leads to increased global O -GlcNAcylation
Creators: name: Mason, Bethany
name: Flach, Susanne
name: Teixeira, Felipe R.
name: Manzano Garcia, Raquel
name: Rueda, Oscar M.
name: Abraham, Jean E.
name: Caldas, Carlos
name: Edwards, Paul A. W.
name: Laman, Heike
Publisher: name: Apollo - University of Cambridge Repository
Year: 2019
Subjects: Original Article
FBXL17
Genome rearrangements
O-GlcNAcylation
O-GlcNAc
UAP1
Ubiquitin
Phosphorylation
Breast cancer

description: Funder: Wildy Fellowship Department of Pathology
description: Funder: Addenbrooke's Charitable Trust, Cambridge University Hospitals; doi: http://dx.doi.org/10.13039/501100002927
description: Funder: The Mark Foundation
description: Abstract: In cancer, many genes are mutated by genome rearrangement, but our understanding of the functional consequences of this remains rudimentary. Here we report the F-box protein encoded by FBXL17 is disrupted in the region of the gene that encodes its substrate-binding leucine rich repeat (LRR) domain. Truncating Fbxl17 LRRs impaired its association with the other SCF holoenzyme subunits Skp1, Cul1 and Rbx1, and decreased ubiquitination activity. Loss of the LRRs also differentially affected Fbxl17 binding to its targets. Thus, genomic rearrangements in FBXL17 are likely to disrupt SCFFbxl17-regulated networks in cancer cells. To investigate the functional effect of these rearrangements, we performed a yeast two-hybrid screen to identify Fbxl17-interacting proteins. Among the 37 binding partners Uap1, an enzyme involved in O-GlcNAcylation of proteins was identified most frequently. We demonstrate that Fbxl17 binds to UAP1 directly and inhibits its phosphorylation, which we propose regulates UAP1 activity. Knockdown of Fbxl17 expression elevated O-GlcNAcylation in breast cancer cells, arguing for a functional role for Fbxl17 in this metabolic pathway.
Anamixis dentatus Ren 2006
Creators: name: White, Kristine N.
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Amphipoda
Leucothoidae
Anamixis
Anamixis dentatus

description: Anamixis dentatus Ren, 2006
 Anamixis dentatus Ren, 2006: 239–246, fig. 92 (Chinese, New species description in English: 519, 520).
 Type locality and specimens. Yongshu Reef, Nansha Islands. Holotype, anamorph male, 2.7 mm; paratypes, leucomorph females, 2.3 and 2.0 mm.
 Material examined. No material available for examination. Diagnosis based on description by Ren (2006).
 Diagnosis. Gnathopod 2 carpus with a large subapical tooth. Telson apex with a strong point.
 Leucomorph (juvenile/sexually dimorphic characters). Unknown.
 Habitat. Among sea weed on coral reef; no depth reported.
 Host. Unknown.
 Distribution. South China Sea: Nansha Islands (Ren 2006).
description: Published as part of White, Kristine N., 2011, A taxonomic review of the Leucothoidae (Crustacea: Amphipoda) 3078, pp. 1-113 in Zootaxa 3078 (1) on page 17, DOI: 10.11646/zootaxa.3078.1.1, http://zenodo.org/record/5243821
MOESM1 of Predictive performance of the estimating equations of renal function in Sri Lankan subjects
Creators: name: Weerakkody, Ranga
name: Sheriff, Mohammed
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Marine Biology

description: Additional file 1: Table S1. Equations used to estimate GFR, BSA and CCr. Table S2. Summary of CKD staging, using MDRD, CKD EPI and Creatinine Clearance. Figure S1. Comparison of estimated glomerular filtration using Creatinine clearance, MDRD and CKD EPI equations.
MOESM5 of Genetic diversity in India and the inference of Eurasian population expansion
Creators: name: Xing, Jinchuan
name: Watkins, W
name: Hu, Ya
name: Huff, Chad
name: Sabo, Aniko
name: Muzny, Donna
name: Bamshad, Michael
name: Gibbs, Richard
name: Jorde, Lynn
name: Yu, Fuli
Publisher: name: figshare
Year: 2019
Subjects: subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Authorsâ original file for figure 4
Image stitching using gradual image warping in autonomous driving
Creators: name: Kinzig, Christian
name: Yifan, Jiang
name: Lauer, Martin
name: Stiller, Christoph
Publisher: name: KIT Scientific Publishing
Year: 2024

description: To improve object recognition and tracking in au-
tonomous driving, we first create a seamless panorama. Object
recognition can benefit from image stitching, especially at the
borders of individual images when an object is only partially
visible. This also prevents duplicate detection of the same ob-
jects in overlapping image areas that are to be filtered for track-
ing. In this process, a homography is determined for the over-
lapping image area, whereby the entire image is transformed
using classical image stitching methods. As a result, the defor-
mations propagate to further images that are to be added to the
panorama. To avoid this problem, we integrated a step-by-step
image warping approach into our existing stitching pipeline.
This ensures that after attaching one image to another, the out-
ermost right and left borders of the panorama are no longer de-
formed. Furthermore, the panorama width remains constant re-
gardless of the calculated homography. We have evaluated our
approach on the nuScenes dataset and the Waymo Open Dataset
for perception. In addition to a qualitative assessment, we eval-
uate the resulting panoramas in terms of the deformation of the
individual images as well as the deformation of labeled object
instances.
MOESM2 of MetaCell: analysis of single-cell RNA-seq data using K-nn graph partitions
Creators: name: Baran, Yael
name: Akhiad Bercovich
name: Arnau Sebe-Pedros
name: Lubling, Yaniv
name: Giladi, Amir
name: Chomsky, Elad
name: Meir, Zohar
name: Hoichman, Michael
name: Aviezer Lifshitz
name: Tanay, Amos
Publisher: name: figshare
Year: 2019
Subjects: subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Hematology

description: Additional file 2: Supplementary figures (Figures S1-S11). (DOCX 9191 kb)
Recommendations for designing genetic test reports to be understood by patients and non-specialists
Creators: name: Farmer, George D.
name: Gray, Harry
name: Chandratillake, Gemma
name: Raymond, F Lucy
name: Freeman, Alexandra L. J.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article
/692/700/1719
/706/689/477/2811
article

description: Funder: David and Claudia Harding Foundation
description: Abstract: Patients and non-specialist healthcare professionals are increasingly expected to understand and interpret the results of genetic or genomic testing. These results are currently reported using a variety of templates, containing different amounts, levels, and layouts of information. We set out to establish a set of recommendations for communicating genetic test results to non-expert readers. We employed a qualitative-descriptive study design with user-centred design principles, including a mixture of in-person semi-structured interviews and online questionnaires with patients, healthcare professionals and the general public. The resulting recommendations and example template include providing at-a-glance comprehension of what the test results mean for the patient; suggested next steps; and details of further information and support. Separation and inclusion of technical methodological details enhances non-specialists’ understanding, while retaining important information for specialists and the patients’ records. The recommendations address the high-level needs of patients and their non-specialist clinicians when receiving genetic test results. These recommendations provide a solid foundation for the major content and structure of reports, and we recommend further engagement with patients and clinicians to tailor reports to specific types of test and results.
Filling Factors of Sunspots in SODISM Images
Creators: name: Alasta, Amro F.
name: Algamudi, Abdrazag
name: Almesrati, Fatma
name: Meftah, Mustapha
name: Qahwaji, Rami
Publisher: name: arXiv
Year: 2019
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: Received: 1st December 2018; Accepted: 18th February 2019; Published: 1st April 2019 Abstract: The calculated filling factors (FFs) for a feature reflect the fraction of the solar disc covered by that feature, and the assignment of reference synthetic spectra. In this paper, the FFs, specified as a function of radial position on the solar disc, are computed for each image in a tabular form. The filling factor (FF) is an important parameter and is defined as the fraction of area in a pixel covered with the magnetic field, whereas the rest of the area in the pixel is field-free. However, this does not provide extensive information about the experiments conducted on tens or hundreds of such images. This is the first time that filling factors for SODISM images have been catalogued in tabular formation. This paper presents a new method that provides the means to detect sunspots on full-disk solar images recorded by the Solar Diameter Imager and Surface Mapper (SODISM) on the PICARD satellite. The method is a totally automated detection process that achieves a sunspot recognition rate of 97.6%. The number of sunspots detected by this method strongly agrees with the NOAA catalogue. The sunspot areas calculated by this method have a 99% correlation with SOHO over the same period, and thus help to calculate the filling factor for wavelength (W.L.) 607nm.
description: 11 pages, 7 figures, 2 tables This article is an extension of our previous studies investigating the detection of sunspots using SODISM images. The paper presented in August 2018 at the IEEE International Conference on Computing, Electronics and Communications Engineering. http://aetic.theiaer.org/archive/v3/v3n2/p1.html
Generalized Polarizabilities in a Constituent Quark Model
Creators: name: Pasquini, B.
name: Scherer, S.
name: Drechsel, D.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Nuclear Theory (nucl-th)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: We discuss low-energy virtual Compton scattering off the proton within the framework of a nonrelativistic constituent quark model. A simple interpretation of the spin-averaged generalized polarizabilities is given in terms of the induced electric polarization (and magnetization). Explicit predictions for the generalized polarizabilities obtained from a multipole expansion are presented for the Isgur-Karl model and are compared with results of various models.
description: 10 pages, Latex, 2 figures, uses ws-p8-50x6-00.cls, talk given at NSTAR2001, Workshop on "The Physics of Excited Nucleons," Mainz, Germany, March 7-10, 2001
ESM-FIG1.pdf from Enhanced heterogenous hydration of SO2 through immobilization of pyridinic-N on carbon materials
Creators: name: Zou, Longhua
name: Yan, Ping
name: Lu, Peng
name: Chen, Dongyao
name: Chu, Wei
name: Cen, Wanglai
Publisher: name: The Royal Society
Year: 2020

description: Carbon materials doped with nitrogen have long been used for SO2 removal from flue gases for the benefits of the environment. The role of water is generally regarded as hydration of SO3 which is formed through the oxidization of SO2. However, the hydration of SO2, especially on the surface of N doped carbon materials, was almost ignored. In this study, the hydration of SO2 was investigated in detail on the pyridinic nitrogen (PyN) doped graphene (GP) surfaces. It is found that, compared to the homogeneous hydration of SO2 assisted with NH3 in gas phase, the heterogeneous hydration is much more thermodynamically and kinetically favourable. Specifically, when a single H2O molecule is involved, the energy barrier for SO2 hydration is as low as 0.15 eV, with 0.59 eV released, indicating the hydration of SO2 can occur at rather low water concentration and temperature. Thermodynamic integration molecular dynamics results show the feasibility of the hydrogenated substrate recovery and the immobilized N acting as a catalytic site for SO2 hydration. Our findings show that the heterogeneous hydration of SO2 should be universal and potentially uncover the puzzling reaction mechanism for SO2 catalytic oxidation at low temperature by N doped carbon materials.
Analysis of the Inter-basin Water Transfer Scheme in India: a case study of the Godavari-Krishna link
Creators: name: Bharati, Luna
name: Anand, B. K.
name: Smakhtin, Vladimir
name: Bharati, Luna
name: Anand, B. K.
name: Smakhtin, Vladimir
Publisher: name: Unknown
Year: 2008
Subjects: subject: Agribusiness
subject: Crop Production/Industries
subject: Farm Management
subject: International Development
subject: Research and Development/Tech Change/Emerging Technologies
subject: River basin management
subject: River basin development
subject: Development projects
subject: Water availability
subject: Water demand
subject: Water transfer
subject: Dams
subject: Canals
subject: Crop management
subject: India
subject: Godavari River Basin
subject: Krishna River Basin
subject: Polavaram Project
subject: Arthur Cotton Barrage

description: In Amarasinghe, Upali A.; Sharma, Bharat R. (Eds.) Strategic Analyses of the National River Linking Project (NRLP) of India, Series 2. Proceedings of the Workshop on Analyses of Hydrological, Social and Ecological Issues of the NRLP, New Delhi, India, 9-10 October 2007. Colombo, Sri Lanka: International Water Management Institute (IWMI)
Right-Angle Shaped Elements as Dual-Band Metamaterial Absorber in Terahertz
Creators: name: Daniel, Salman
name: Bawuah, Prince
Publisher: name: Apollo - University of Cambridge Repository
Year: 2019
Subjects: Regular
Metamaterial
absorbance
photonics devices
terahertz

description: Abstract: Metamaterial absorbers display potential applications in the field of photonics and have been investigated extensively during the last decade. We propose a dual-band resonant metamaterial absorber with right-angle shaped elements (RAEs) in the terahertz range based on numerical simulations. The absorber remains insensitive to a wide range of incidence angles (0°–70°) by showing a minimum absorbance of ~80% at 70°. Furthermore, the proposed absorber is highly independent on any state of polarization of the incidence electromagnetic wave due to the high absorbance, i.e., greater than 80%, recorded for the considered polarization states. To further comprehend the slight variations in absorbance as a function of change in the angle of incidence, the impedance of the structure has been critically examined. The metamaterial absorber is simple in design, and we provide a possible path of fabrication.
Soliton-comb structures in ring-shaped optical microresonators: generation, reconstruction and stability
Creators: name: Bitha, R. D. Dikandé
name: Dikandé, Alain M.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Optics (physics.optics)
subject: Pattern Formation and Solitons (nlin.PS)
subject: FOS: Physical sciences

description: Characteristic features of soliton-comb structures in optical microresonators are investigated in normal and anomalous dispersion regimes, when the detuning parameter is varied over a broad range of values. The study rests on the assumption that soliton combs are self-organized ensemble of co-propagating coherently entangled states of light, and depending on the group-velocity dispersion they can result from space-division multiplexing of single-bright and single-dark solitons. Their analytical and numerical reconstruction schemes are discussed, while a linear-stability analysis leads to a $2\times 2$ Lamé eigenvalue problem whose boundstate spectrum is composed of a Goldstone-type translation mode and stable internal modes, as well as unstable decaying modes and growing modes. A power-spectral analysis of the three distinct possible soliton crystals enables us probe their inner structures in the frequency domain, and unveil the existence of structural defects in their power spectra.
description: 19 pages, 9 figures, submitted
Phenomenological Constraints on Extended Quark Sectors
Creators: name: Yanir, Tomer
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We study the flavor physics in two extensions of the quark sector of the Standard Model (SM): a four generation model and a model with a single vector--like down--type quark (VDQ). In our analysis we take into account the experimental constraints from tree--level charged current processes, rare Kaon decay processes, rare B decay processes, the $Z\to b \bar{b}$ decay, $K$, $B$ and $D$ mass differences, and the CP violating parameters $\frac ε^\prime}ε$, $ε_K$ and $a_{ψK}$. All the constraints are taken at two sigma. We find bounds on parameters which can be used to represent the New Physics contributions in these models ($λ_{t^ \prime}^{bd}$, $λ_{t^ \prime}^{bs}$ and $λ_{t^ \prime}^{sd}$ in the four--generation model, and $U_{bd}$, $U_{bs}$ and $U_{sd}$ in the VDQ model) due to all the above constraints. In both models the predicted ranges for $a_{SL}$ (the CP asymmetry in semi-leptonic decays), $ΔM_D$, $B(K^+\toπ^+ ν\barν)$, $B(K_L\toπ^0 ν\barν)$ and $B(K_L\to μ\barμ)_{SD}$ can be significantly higher than the predictions of the SM, while the allowed ranges for $a_{ψK}$ and for $Δm_{B_S}$ are consistent with the SM prediction.
description: 22 pages, 5 figures (v3: added a reference, updated a reference, added missing units)