cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
A semiclassical treatment of spinor topological effects in driven, inhomogeneous insulators under external electromagnetic fields
Creators: name: Petrides, Ioannis
name: Zilberberg, Oded
Publisher: name: arXiv
Year: 2022
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: Introducing internal degrees of freedom in the description of topological insulators has led to a myriad of theoretical and experimental advances. Of particular interest are the effects of periodic perturbations, either in time or space, as they considerably enrich the variety of electronic responses, with examples such as Thouless's charge pump and its higher dimensional cousins, or, higher-order topological insulators. Here, we develop a semiclassical approach to transport and accumulation of general spinor degrees of freedom, such as physical spin, valley, or atomic orbits, in adiabatically driven, weakly inhomogeneous insulators of dimensions one, two and three under external electromagnetic fields. Specifically, we focus on physical spins and derive the spin current and density up to third order in the spatio-temporal modulations of the system. We, then, relate these contributions to geometrical and topological objects -- the spin-Chern fluxes and numbers -- defined over the higher-dimensional phase-space of the system, i.e., its combined momentum-position-time coordinates. Furthermore, we provide a connection between our semiclassical analysis and the modern theory of multipole moments by introducing spin analogues of the electric dipole, quadrupole and octapole moments. The results are showcased in concrete tight-binding models where the induced responses are calculated analytically.
description: 19 pages, 8 figures, comments are welcome
Results on angular correlations with ALICE
Creators: name: Christakoglou, Panos
Publisher: name: arXiv
Year: 2013
Subjects: subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: Angular correlations are a sensitive probe of the transport properties of the system produced in nucleus-nucleus collisions. Similar studies performed in p-Pb collisions have recently revealed intriguing features as well. In this article, we review the latest results on charged and identified particle correlations obtained with the ALICE detector at the LHC in both Pb-Pb and p-Pb events.
description: 5 pages, 8 figures
Additional file 1 of Neuropathology changed by 3- and 6-months low-level PM2.5 inhalation exposure in spontaneously hypertensive rats
Creators: name: Hsiao-Chi Chuang
name: Hsin-Chang Chen
name: Pei-Jui Chai
name: Ho-Tang Liao
name: Wu, Chang-Fu
name: Chia-Ling Chen
name: Jhan, Ming-Kai
name: Hui-I Hsieh
name: Kuen-Yuh Wu
name: Chen, Ta-Fu
name: Tsun-Jen Cheng
Publisher: name: figshare
Year: 2020
Subjects: subject: Cell Biology
subject: Neuroscience
subject: Biotechnology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1: Table S1. Meteorological and gaseous data measured by the EPA Guting air quality monitoring stations during the study period. Figure S1. Spectrums of MDA analysed by LC-MS/MS. Figure S2. Effects (3- and 6-months exposure) of PM2.5 on the inflammatory infiltration of lungs in SH rats. Subpleural alveolar infiltration of mononuclear cells was observed in the lungs after 3- and 6-months exposure of HEPA and/or PM2.5. Figure S3. Alteration in body weight of SH rats between HEPA (control) and PM2.5 (exposure) groups after 6-months exposure. Figure S4. IHC images of total Tau (t-Tau) in the cerebellum, hippocampus, and cortex of SH rats after 6 months of exposure to HEPA (control) and PM2.5 (exposure). Scar bar is 50 μm. Figure S5. Chronic effects (6-months exposure) of PM2.5 on the histological changes of cerebellum, hippocampus, and cortex in SH rats. Scale bar: 200 μm.
Additional file 1 of Combining the theory of change and realist evaluation approaches to elicit an initial program theory of the MomConnect program in South Africa
Creators: name: Kabongo, Eveline M
name: Mukumbang, Ferdinand C.
name: Delobelle, Peter
name: Nicol, Edward
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1 List of documents containing clauses for MomConnect program (n = 22) the Document was ordered by date of publication.
Additional file 1 of The recent trend in mycobacterial strain diversity among extra pulmonary lymph node tuberculosis and their association with drug resistance and the host immunological response in South India
Creators: name: Sivakumar, Shanmugam
name: Yuvaraj Chandramohan
name: Gokul Raj Kathamuthu
name: Gomathi Sekar
name: Devika Kandhasamy
name: Venkatesan Padmanaban
name: Hissar, Syed
name: Srikanth P. Tripathy
name: Bethunaickan, Ramalingam
name: Dhanaraj, Baskaran
name: Subash Babu
name: Ranganathan, Uma Devi
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Supplementary Table 1. Demographic and clinical details of the study population
Strong coupling constant of h$_{b}$ vector to the pseudoscalar and vector $B_{c}$ mesons in QCD sum rules
Creators: name: Bashiry, V.
name: Abbasi, A.
Publisher: name: arXiv
Year: 2014
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The strong coupling constant g$_{h_{b}B_{c}^{PS}B_{c}^{V}}$ is calculated using the three-point QCD sum rules method. We use correlation functions to obtain these strong coupling constants with contributions of both B$_{c}^{PS} $ and B$_{c}^{V}$mesons as off-shell states. The contributions of two gluon condensates as a radiative correction are considered. The results show that g$_{h_{b}B_{c}^{PS}B_{c}^{V}}=8.80\pm 2.84 GeV^{-1}$and g$_{h_{b}B_{c}^{V} B_{c}^{PS}}=9.34\pm 3.12 GeV^{-1}$ in the $B_{c}^{PS}$ and $B_{c}^{V}$ off-shell state, respectively.
description: 9 pages, 4 figures
Additional file 1 of Hypervirulent Streptococcus agalactiae septicemia in twin ex-premature infants transmitted by breast milk: report of source detection and isolate characterization using commonly available molecular diagnostic methods
Creators: name: Ager, Edward P. C.
name: Steele, Eric D.
name: Nielsen, Lindsey E.
name: Nestander, Matthew A.
name: Mende, Katrin
name: Spencer, Steven E.
Publisher: name: figshare
Year: 2020
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Science Policy
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Additional file 1. S. agalactiae Inoculated Matrix Comparison using the Cephied GBS LBAssay.
(Успішна) кар'єра науковця
Creators: name: Degtyarova, Iryna
Publisher: name: Zenodo
Year: 2022
Subjects: Ukraine
академічна кар'єра
вища освіта
наука
research career

description: Презентація для учасників тренінгу "Бренд науковця у цифровому світі" 21 листопада 2022 року
Supplementary document for Correction of transcranial acoustic field using transient ultrasound field visualization technique - 6672579.pdf
Creators: name: cheng, zhong
name: Deng, Lijun
name: LIN, YIQIN
name: Zeng, Lvming
name: Ji, Xuanrong
Publisher: name: Optica Publishing Group
Year: 2023
Subjects: Uncategorized

description: Supplement 1
Additional file 2 of The recent trend in mycobacterial strain diversity among extra pulmonary lymph node tuberculosis and their association with drug resistance and the host immunological response in South India
Creators: name: Sivakumar, Shanmugam
name: Yuvaraj Chandramohan
name: Gokul Raj Kathamuthu
name: Gomathi Sekar
name: Devika Kandhasamy
name: Venkatesan Padmanaban
name: Hissar, Syed
name: Srikanth P. Tripathy
name: Bethunaickan, Ramalingam
name: Dhanaraj, Baskaran
name: Subash Babu
name: Ranganathan, Uma Devi
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Supplementary Fig. 1. Diminished plasma levels type 2 and type 17 cytokines associated with individuals infected with drug sensitive strain. The systemic levels of IL-4, IL-13, IL-17A and IL-22 were measured by ELISA between the drug sensitive (DS, n = 10) and orphan mono resistant (OMR, n = 3) strain infected individuals. The data were shown as bar graph and P values were calculated using the Mann-Whitney U test.
Short-Range Correlations in Magnetite above the Verwey Temperature
Creators: name: Bosak, Alexey
name: Chernyshov, Dmitry
name: Hoesch, Moritz
name: Piekarz, Przemyslaw
name: Tacon, Mathieu Le
name: Krisch, Michael
name: Kozlowski, Andrzej
name: Oleś, Andrzej M.
name: Parlinski, Krzysztof
Publisher: name: arXiv
Year: 2014
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Magnetite, Fe$_3$O$_4$, is the first magnetic material discovered and utilized by mankind in Ancient Greece, yet it still attracts attention due to its puzzling properties. This is largely due to the quest for a full and coherent understanding of the Verwey transition that occurs at $T_V=124$ K and is associated with a drop of electric conductivity and a complex structural phase transition. A recent detailed analysis of the structure, based on single crystal diffraction, suggests that the electron localization pattern contains linear three-Fe-site units, the so-called trimerons. Here we show that whatever the electron localization pattern is, it partially survives up to room temperature as short-range correlations in the high-temperature cubic phase, easily discernible by diffuse scattering. Additionally, {\it ab initio} electronic structure calculations reveal that characteristic features in these diffuse scattering patterns can be correlated with the Fermi surface topology.
description: 7 pages, 6 figures
Dianetics: Un Precursore della Teoria Computazionale della Mente e le Analoghe Funzioni dell'Intelligenza Artificiale.
Creators: name: Ongania, Renato
Publisher: name: Zenodo
Year: 2024

description: Lo sviluppo e la nascita di Dianetics, con la sua enfasi sulla memoria e la correzione delle influenze negative, può essere visto come un precursore concettuale di alcune idee centrali nella teoria computazionale della mente. I più recenti contributi di Andy Clark, con il concetto di mente estesa, arricchiscono ulteriormente questa prospettiva, suggerendo che la mente umana è un sistema complesso e distribuito che interagisce costantemente con il suo ambiente. Inoltre, le analogie tra la mente umana e l'intelligenza artificiale come servomeccanismi offrono un ulteriore livello di comprensione, evidenziando come entrambi i sistemi utilizzino feedback per ottimizzare il loro funzionamento e raggiungere i loro obiettivi.
Additional file 1 of Informant-based screening tools for diagnosis of dementia, an overview of systematic reviews of test accuracy studies protocol
Creators: name: Taylor-Rowan, Martin
name: Nafisi, Sara
name: Patel, Amit
name: Burton, Jennifer K.
name: Quinn, Terry J.
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 1. Supplementary materials. Search terms.
Study of CP-violating charge asymmetries of single muons and like-sign dimuons in p pbar collisions
Creators: name: D0 Collaboration
Publisher: name: arXiv
Year: 2013
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: We measure the inclusive single muon charge asymmetry and the like-sign dimuon charge asymmetry in $p \bar{p}$ collisions using the full data set of 10.4 fb$^{-1}$ collected with the D0 detector at the Fermilab Tevatron. The standard model predictions of the charge asymmetries induced by CP violation are small in magnitude compared to the current experimental precision, so non-zero measurements could indicate new sources of CP violation. The measurements differ from the standard model predictions of CP violation in these asymmetries with a significance of 3.6 standard deviations. These results are interpreted in a framework of $B$ meson mixing within the CKM formalism to measure the relative width difference $\dgg$ between the mass eigenstates of the $\Bd$ meson system, and the semileptonic charge asymmetries $\asld$ and $\asls$ of $\Bd$ and $\Bs$ mesons respectively.
description: Submitted to Phys. Rev. D
Leitfaden zur digitalen Datensparsamkeit (mit Praxisbeispielen)
Creators: name: Heber, Maximilian
name: Jakob, Moritz
name: Landwehr, Matthias
name: Leendertse, Jan
name: Müller, Maximilian
name: Schneider, Gabriel
name: von Suchodoletz, Dirk
name: Ulrich, Robert
Publisher: name: Zenodo
Year: 2024
Subjects: Forschungsdaten
Forschungsdatenmanagement
Open Science
FDM
RDM
Research Data Managament
Datensparsamkeit

description: Im Zuge der stetig wachsenden Brisanz des Forschungsdatenmanagements fallen immer größere Mengen an Forschungsdaten an. Diese an sich begrüßenswerte Entwicklung führt zu technischen und organisatorischen Herausforderungen nicht nur im Bereich der Speicherung von Forschungsdaten, sondern in allen Phasen des Forschungsdatenlebenszyklus. Der vorliegende Beitrag erläutert vor diesem Hintergrund mögliche Motivationen hinter digitaler Datensparsamkeit mit Blick auf organisatorische, technische und ethische Kriterien, Datenschutz und Nachhaltigkeit. Anschließend werden vor dem Hintergrund zentraler Herausforderungen Umsetzungsvorschläge für das Vorfeld sowie den Verlauf eines Forschungsvorhabens gemacht. Zudem werden grundlegende Empfehlungen zur digitalen Datensparsamkeit ausgesprochen.

Eine kürzere Ausgabe des Leitfadens ist im Mai 2024 in der Zeitschrift o | bib erschienen: https://doi.org/10.5282/o-bib/6036

Diese Ausgabe enthält ein zusätzliches Kapitel (4.2) mit konkreten Praxisbeispielen.

Dieser Artikel wurde ins Englische übersetzt:

Heber, M., Jakob, M., Landwehr, M., Leendertse, J., Müller, M., Schneider, G., von Suchodoletz, D., & Ulrich, R. (2024). A Users' Guide to Economical Digital Data Usage. Zenodo. https://doi.org/10.5281/zenodo.13752220
Dynamical analysis of the covarying coupling constants in scalar-tensor gravity
Creators: name: Cuzinatto, Rodrigo R.
name: Gupta, Rajendra P.
name: Pompeia, Pedro J.
Publisher: name: arXiv
Year: 2022
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: A scalar-tensor theory of gravity is considered wherein the gravitational coupling $G$ and the speed of light $c$ are admitted as space-time functions and combine to form the definition of the scalar field $ϕ$. The varying $c$ participates in the definition of the variation of the matter part of the action; it is related to the effective stress-energy tensor which is a result of the requirement of symmetry under general coordinate transformations. The effect of the cosmological coupling $Λ$ is accommodated within a possible behaviour of $ϕ$. We analyze the dynamics of $ϕ$ in the phase space, thereby showing the existence of an attractor point for reasonable hypotheses on the potential $V(ϕ)$ and no particular assumption on the Hubble function. The phase space analysis is performed both with the linear stability theory and via the more general Lyapunov's method. Either method lead to the conclusion that the condition $\dot{G}/G=σ\left(\dot{c}/c\right)$ where $σ=3$ must hold for the rest of cosmic evolution after the system gets to the globally asymptotically stable fixed point and the dynamics of $ϕ$ ceases. This result provides a physical foundation for the phenomenological model admitting $\left(G/G_{0}\right)=\left(c/c_{0}\right)^{3}$ used recently to interpret cosmological and astrophysical data. The thus co-varying couplings $G$ and $c$ impact the cosmic evolution after the dynamical system settles to equilibrium. This impact is investigated by constructing the generalized continuity equation in our scalar-tensor model and considering two possible regimes for the varying speed of light -- decreasing $c(a)$ and increasing $c(a)$ -- while solving our modified Friedmann equations. The solutions to the latter equations make room for radiation- and matter-dominated eras that progress to a dark-energy-type of accelerated expansion.
description: 15 pages, 4 figures. v2: 19 pages, 6 figures; stability analysis expanded and generalized; discussion improved. v3: 27 pages, 6 figures; appendix added; abstract edited due to arXiv's policy; content matches the published version
Additional file 1 of Excavating the functionally crucial active-site residues of the DXS protein of Bacillus subtilis by exploring its closest homologues
Creators: name: Runthala, Ashish
name: Tavakala Harsha Sai
name: Kamjula, Vandana
name: Phulara, Suresh C.
name: Vikrant Singh Rajput
name: Karthikeyan Sangapillai
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 1: Supplementary Table 1. List of sequences from plant, animal, protista, human, fungi, and bacteria
High mobility group box 1 and Dickkopf-related protein 1 as biomarkers of glucose toxicity, atherogenicity, and lower β cell function in patients with type 2 diabetes mellitus
Creators: name: Al-Hakeim, Hussein Kadhem
name: Al-Kaabi, Qasim Jasim
name: Maes, Michael
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer

description: Type 2 diabetes mellitus (T2DM) is associated with increased atherogenicity and inflammatory responses, which may be related to high mobility group box 1 (HMGB1) and Dickkopf-related protein 1 (DKK1). The role of HMGB1 and DKK1 in T2DM is examined in association with lipid and insulin profiles. Serum HMGB1 and DKK1 were measured in T2DM with and without hypertension and compared with controls. The results showed that HMGB1 and DKK1 are higher in T2DM irrespective of hypertension. A large part of the variance in the β-cell index and glucose toxicity was explained by the combined effects of HMGB1 and DKK1. In conclusion, both HMGB1 and DKK1 may contribute to increased atherogenicity in T2DM. Moreover, both biomarkers may cause more deficits in β-cell function and increase glucose toxicity leading to the development of more inflammation and diabetic complications. HMGB1 and the Wnt pathways are other drug targets in treating T2DM.
Bibliography of items citing New Zealand’s Appendices to the Journals of House of Representatives (AJHRs).
Creators: name: Clemens, Dave
Publisher: name: figshare
Year: 2023
Subjects: classificationCode: 430320
subject: New Zealand history
classificationCode: 440708
subject: Public administration
classificationCode: 480701
subject: Administrative law
classificationCode: 440809
subject: New Zealand government and politics

description: This bibliography was created to help show the academic value of having the HathiTrust copyright restricted 1951-1976 AJHRs accessible to all. These AJHR years cover 100 volumes and well over 100 000 pages.
The aim is to demonstrate the range of disciplines and research 'use cases' that this key resource can support.Bibliography items have been sourced from Scopus, Google Scholar and FindNZarticles over August to September 2023.
The focus is on material published since the year 2000 although a few earlier works are included.
The EndNote RIS txt file has also been uploaded to Figshare.Results were exported into EndNote software and the output style used was APA 7th
Redrawing the Boundaries on Purchasing Data from Privacy-Sensitive Individuals
Creators: name: Nissim, Kobbi
name: Vadhan, Salil
name: Xiao, David
Publisher: name: arXiv
Year: 2014
Subjects: subject: Computer Science and Game Theory (cs.GT)
subject: FOS: Computer and information sciences

description: We prove new positive and negative results concerning the existence of truthful and individually rational mechanisms for purchasing private data from individuals with unbounded and sensitive privacy preferences. We strengthen the impossibility results of Ghosh and Roth (EC 2011) by extending it to a much wider class of privacy valuations. In particular, these include privacy valuations that are based on (ε, δ)-differentially private mechanisms for non-zero δ, ones where the privacy costs are measured in a per-database manner (rather than taking the worst case), and ones that do not depend on the payments made to players (which might not be observable to an adversary). To bypass this impossibility result, we study a natural special setting where individuals have mono- tonic privacy valuations, which captures common contexts where certain values for private data are expected to lead to higher valuations for privacy (e.g. having a particular disease). We give new mech- anisms that are individually rational for all players with monotonic privacy valuations, truthful for all players whose privacy valuations are not too large, and accurate if there are not too many players with too-large privacy valuations. We also prove matching lower bounds showing that in some respects our mechanism cannot be improved significantly.
Spreading the Word on Going Digital in the Lab
Creators: name: Goldman, Julie
name: Dannehl, Katherine
name: Gould, James
name: Hauserman, Sarah Lace
name: Keating, Kathleen M
name: Miranda, Mason
name: Wainstock, Daniel
Publisher: name: Zenodo
Year: 2018
Subjects: electronic lab notebooks
matrix

description: The Harvard Medical School (HMS) Data Management Working Group (DMWG) was established in response to identified unmet needs in biomedical research. One subgroup was created based on interest surrounding interest and use of Electronic Lab Notebooks (ELN). The group created a matrix table, comparing and contrasting various ELN options, with the goal to aid researchers in the process of identifying appropriate solutions. We sent a survey to 26 vendors and created a matrix based on the responses. This Electronic Lab Notebook Comparison Matrix serves as an educational tool and decision map for librarians and researchers alike to navigate the growing ELN market. Additionally, the matrix has been recognized around the world on Twitter, Wikipedia, and recently in Nature, aiding the greater community. This poster highlights this recent successful work of this group.
Origin of long-lived oscillations in 2D-spectra of a Quantum Vibronic Model: Electronic vs Vibrational coherence
Creators: name: Plenio, M. B.
name: Almeida, J.
name: Huelga, S. F.
Publisher: name: arXiv
Year: 2013
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: Biological Physics (physics.bio-ph)
subject: Biomolecules (q-bio.BM)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences
subject: FOS: Biological sciences

description: We demonstrate that the coupling of excitonic and vibrational motion in biological complexes can provide mechanisms to explain the long-lived oscillations that have been obtained in non linear spectroscopic signals of different photosynthetic pigment protein complexes and we discuss the contributions of excitonic versus purely vibrational components to these oscillatory features. Considering a dimer model coupled to a structured spectral density we exemplify the fundamental aspects of the electron-phonon dynamics, and by analyzing separately the different contributions to the non linear signal, we show that for realistic parameter regimes purely electronic coherence is of the same order as purely vibrational coherence in the electronic ground state. Moreover, we demonstrate how the latter relies upon the excitonic interaction to manifest. These results link recently proposed microscopic, non-equilibrium mechanisms to support long lived coherence at ambient temperatures with actual experimental observations of oscillatory behaviour using 2D photon echo techniques to corroborate the fundamental importance of the interplay of electronic and vibrational degrees of freedom in the dynamics of light harvesting aggregates.
description: 10 pages
Segre embedding and related maps and immersions in differential geometry
Creators: name: Chen, Bang-Yen
Publisher: name: arXiv
Year: 2013
Subjects: subject: Algebraic Geometry (math.AG)
subject: Differential Geometry (math.DG)
subject: FOS: Mathematics
subject: 14

description: Segre embedding was introduced by C. Segre (1863--1924) in his famous 1891 article \cite{segre}. The Segre embedding plays an important roles in algebraic geometry as well as in differential geometry, mathematical physics, and coding theory. In this article, we survey main results on Segre embedding in differential geometry. Moreover, we also present recent differential geometric results on maps and immersions which are constructed in ways similar to Segre embedding.
description: 39 pages
Tournaments and Even Graphs are Equinumerous
Creators: name: Royle, Gordon F.
name: Praeger, Cheryl E.
name: Glasby, S. P.
name: Freedman, Saul D.
name: Devillers, Alice
Publisher: name: arXiv
Year: 2022
Subjects: subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: G.2.1; G.2.2
subject: 05C30 (Primary) 05C75, 05A15 (secondary)

description: A graph is called odd if there is an orientation of its edges and an automorphism that reverses the sense of an odd number of its edges, and even otherwise. Pontus von Brömssen (né Andersson) showed that the existence of such an automorphism is independent of the orientation, and considered the question of counting pairwise non-isomorphic even graphs. Based on computational evidence, he made the rather surprising conjecture that the number of pairwise non-isomorphic even graphs on $n$ vertices is equal to the number of pairwise non-isomorphic tournaments on $n$ vertices. We prove this conjecture using a counting argument with several applications of the Cauchy-Frobenius Theorem.
description: 9 pages. Corrected minor non-mathematical typos and slightly expanded the introduction
Macroclumping as solution of the discrepancy between Hα and P v mass loss diagnostics for O-type stars
Creators: name: Šurlan, B.
name: Hamann, W. -R.
name: Aret, A.
name: Kubát, J.
name: Oskinova, L. M.
name: Torres, A. F.
Publisher: name: arXiv
Year: 2013
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Recent studies of O-type stars demonstrated that discrepant mass-loss rates are obtained when different diagnostic methods are employed - fitting the unsaturated UV resonance lines (e.g. P v) gives drastically lower values than obtained from the Hα emission. Wind clumping may be the main cause for this discrepancy. In a previous paper, we have presented 3-D Monte-Carlo calculations for the formation of scattering lines in a clumped stellar wind. In the present paper we select five O-type supergiants (from O4 to O7) and test whether the reported discrepancies can be resolved this way. In the first step, the analyses start with simulating the observed spectra with Potsdam Wolf-Rayet (PoWR) non-LTE model atmospheres. The mass-loss rates are adjusted to fit best to the observed Hα emission lines. For the unsaturated UV resonance lines (i.e. P v) we then apply our 3-D Monte-Carlo code, which can account for wind clumps of any optical depths, a non-void inter-clump medium, and a velocity dispersion inside the clumps. The ionization stratifications and underlying photospheric spectra are adopted from the PoWR models. From fitting the observed resonance line profiles, the properties of the wind clumps are constrained. Our results show that with the mass-loss rates that fit Hα (and other Balmer and He II lines), the UV resonance lines (especially the unsaturated doublet of P v) can also be reproduced without problem when macroclumping is taken into account. There is no need to artificially reduce the mass-loss rates, nor to assume a sub-solar phosphorus abundance or an extremely high clumping factor, contrary to what was claimed by other authors. These consistent mass-loss rates are lower by a factor of 1.3 to 2.6, compared to the mass-loss rate recipe from Vink et al. Macroclumping resolves the previously reported discrepancy between Hα and P v mass-loss diagnostics.
description: 18 pages, 14 figures, 5 tables, accepted for publication in Astrononomy & Astrophysics
Additional file 1 of Auxin, Abscisic Acid and Jasmonate Are the Central Players in Rice Sheath Rot Caused by Sarocladium oryzae and Pseudomonas fuscovaginae
Creators: name: K. J. Peeters
name: M. Ameye
name: K. Demeestere
name: K. Audenaert
name: M. Höfte
Publisher: name: figshare
Year: 2020
Subjects: subject: Plant Biology
subject: FOS: Biological sciences

description: Additional file 1.
Additional file 2 of Excavating the functionally crucial active-site residues of the DXS protein of Bacillus subtilis by exploring its closest homologues
Creators: name: Runthala, Ashish
name: Tavakala Harsha Sai
name: Kamjula, Vandana
name: Phulara, Suresh C.
name: Vikrant Singh Rajput
name: Karthikeyan Sangapillai
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 2: Figure S1. Multiple sequence alignment of the constructed dataset against the reference structure 6OUW. The alignment is constructed through ClustalO algorithm and is parsed against 6OUW through Espript3 server. The red shading indicates the sequence conservation.
Additional file 1 of The pathological features of hip abductor tendon tears – a cadaveric study
Creators: name: Zhu, Mark F.
name: Smith, Brittany
name: Krishna, Sanjeev
name: Musson, David S.
name: Riordan, Peter R.
name: McGlashan, Sue R.
name: Cornish, Jillian
name: Munro, Jacob T.
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 1: Appendix 1. Modified Movin’s score for tendinopathy. Appendix 2. Enthesis scoring criteria, maximum score 15, minimum score 0.
Getting Everyone Onboard! (and Offboarded): Coordinating Data Services in the Lab
Creators: name: Hauserman, Sarah
name: Goldman, Julie
Publisher: name: Zenodo
Year: 2022
Subjects: data management
research data management
data services
coordinated data services
onboarding
offboarding
data management plan

description: Coordinated efforts between data professionals in the library, research labs, and information technology departments can reshape institutional data services. Indeed, such collaborative efforts offer a unique opportunity to implement superior data management workflows while also addressing domain-specific challenges. Our institutional vision for a more inclusive data management environment involves multiple research data stakeholders working together to support the advancement of health and science. Bringing together multiple stakeholders enabled us to provide solutions for data reproducibility including project synchronicity and advancement.

Through a group partnership, we were able to artfully collect existing documents and resources across the entire data lifecycle, and connect directly with researchers to ensure we captured the essential RDM-related activities, steps, and resources one should consider during the on and offboarding process.

This poster presents our collective effort to develop and maintain data management templates to assist researchers during the employee onboarding and offboarding processes, and the progress made in marketing those resources to the community.

Resources created by the LMA Research Data Management Working Group discussed throughout this poster are available in Open Science Framework: osf.io/pw7ed.
The Compatibility of Flare Temperatures Observed with AIA, GOES, and RHESSI
Creators: name: Ryan, Daniel F.
name: O'Flannagain, Aidan M.
name: Aschwanden, Markus J.
name: Gallagher, Peter T.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We test the compatibility and biases of multi-thermal flare DEM (differential emission measure) peak temperatures determined with AIA with those determined by GOES and RHESSI using the isothermal assumption. In a set of 149 M- and X-class flares observed during the first two years of the SDO mission, AIA finds DEM peak temperatures at the time of the peak GOES 1-8 A flux to have an average of Tp = 12.0+/-2.9 MK and Gaussian DEM widths of log10(sigma_T) = 0.50+/-0.13. From GOES observations of the same 149 events, a mean temperature of Tp = 15.6+/-2.4 MK is inferred, which is systematically higher by a factor of TGOES/TAIA = 1.4+/-0.4. We demonstrate that this discrepancy results from the isothermal assumption in the inversion of the GOES filter ratio. From isothermal fits to photon spectra at energies of E ~ 6-12 keV of 61 of these events, RHESSI finds the temperature to be higher still by a factor of TRHESSI/TAIA = 1.9+/-1.0. We find that this is partly a consequence of the isothermal assumption. However, RHESSI is not sensitive to the low-temperature range of the DEM peak, and thus RHESSI samples only the high-temperature tail of the DEM function. This can also contribute to the discrepancy between AIA and RHESSI temperatures. The higher flare temperatures found by GOES and RHESSI imply correspondingly lower emission measures. We conclude that self-consistent flare DEM temperatures and emission measures require simultaneous fitting of EUV (AIA) and soft X-ray (GOES and RHESSI) fluxes.
description: Accepted by Solar Physics Journal
Additional file 1 of Efficacy of extended release formulations of Natular™ (spinosad) against larvae and adults of Anopheles mosquitoes in western Kenya
Creators: name: Gimnig, John E.
name: Ombok, Maurice
name: Nabie Bayoh
name: Mathias, Derrick
name: Ochomo, Eric
name: Jany, William
name: Walker, Edward D.
Publisher: name: figshare
Year: 2020
Subjects: subject: Ecology
subject: FOS: Biological sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Table S1. Summary of mortality and overall pupation by week and larvicide treatment. Percent (%) mortality/pupation is presented by week and treatment with lower and upper 95% confidence limits in parentheses. Table S2. Results of logistic regression model for 24-hour mortality in the semi-field experiment. Table S3. Conditional pairwise mortality comparisons for 24-hour mortality observed in the semi-field experiment. Table S4. Summary statistics for evaluation of spinosad application on habitat occupancy and larval density as measured every 4-5 days in 30 sentinel habitats in each village. Table S5. Results of statistical models for habitat occupancy and the number of early (L1 & L2), late (L3, L4 & Pupae) and all instar larvae as measured every 4-5 days in 30 sentinel habitats in each village. Table S6. Results of a negative binomial regression model for adult Anopheles gambiae s.l. mosquitoes as measured by pyrethrum spray catches. Table S7. Results of a negative binomial regression model for adult Anopheles funestus mosquitoes as measured by pyrethrum spray catches.
Additional file 1 of Revealing the organic dye and mordant composition of Paracas textiles by a combined analytical approach
Creators: name: Sabatini, Francesca
name: Bacigalupo, Martina
name: Degano, Ilaria
name: Javér, Anna
name: Hacke, Marei
Publisher: name: figshare
Year: 2020
Subjects: subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Plant Biology

description: Additional file 1: Table S1. List of the Paracas fibres with their relative description and analysis performed. Table S2. Interpretation of the additional XRF map collected from 23 of the fibre samples. The colour of the cells for each element is related to its peak area intensity in XRF spectra, from the most intense (white) to the lowest (black) with one shade of grey in between. Figure S1. a) HPLC–DAD (extracted at 450 nm) b) HPLC–DAD (extracted at max abs 450–550 nm) c) HPLC–DAD (extracted at max abs 550–650 nm) of the extracts of all the white fibers analyzed (all chromatograms are presented in the same scale, and stacked for the sake of clarity). Figure S2. Compound labelled as Unk in Fig. 4a: a) UV–Vis spectrum; b) mass spectrum; c) product-ion spectrum. Figure S3. a) HPLC–DAD (extracted at max abs 300–400 nm) b) HPLC–DAD (extracted at max abs 550–650 nm) of the extracts of all the yellow and green fibers analyzed; c) UV–Vis spectra of the g1-5 compounds labelled in Figure S3 a; d) UV–Vis spectra of the b1-3 compounds labelled in Figure S3 b (all chromatograms are presented in the same scale, and stacked for the sake of clarity). Figure S4. HPLC–DAD (extracted at max abs 300–400 nm) of the extracts of all the brown (P008, P023, M005 and M002), black (P020 and P022) and grey (M006b) fibers analyzed (all chromatograms are presented in the same scale, and stacked for the sake of clarity).
The Red MSX Source Survey: the Massive Young Stellar Population of our Galaxy
Creators: name: Lumsden, S. L.
name: Hoare, M. G.
name: Urquhart, J. S.
name: Oudmaijer, R. D.
name: Davies, B.
name: Mottram, J. C.
name: Cooper, H. D. B.
name: Moore, T. J. T.
Publisher: name: arXiv
Year: 2013
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We present the Red MSX Source (RMS) Survey, the largest statistically selected catalog of young massive protostars and HII regions to date. We outline the construction of the catalog using mid and near infrared color selection, as well as the detailed follow up work at other wavelengths, and at higher spatial resolution in the infrared. We show that within the adopted selection bounds we are more than 90% complete for the massive protostellar population, with a positional accuracy of the exciting source of better than 2 arcseconds. We briefly summarize some of the results that can be obtained from studying the properties of the objects in the catalog as a whole, and find evidence that the most massive stars form: (i) preferentially nearer the Galactic centre than the anti-centre; (ii) in the most heavily reddened environments, suggestive of high accretion rates; and (iii) from the most massive cloud cores.
description: Accepted for publication in ApJS. The full version of Table 1 will be made available electronically, but the most up-to-date version of our database will always be that accessible at http://rms.leeds.ac.uk
Longwood Medical Area Research Data Management Working Group
Creators: name: Goldman, Julie
name: Pierce, Jessica
name: Hauserman, Sarah Lace
Publisher: name: Zenodo
Year: 2020
Subjects: research data management
data services

description: The Longwood Medical Area Research Data Management Working Group shares guidance, resources and solutions, and develops best practices to meet current, and anticipate future, research data management needs of researchers across the LMA. We strive to educate the community on data management and solve unique research challenges. This poster includes an overview of the working group, subgroup projects, and ways HMS researchers can learn more about implementing data management practices into their work.
description: Presented at the 2020 Harvard Medical School Research Cores Online Poster Showcase, December 2-4, 2020. Please contact the authors for complete version.
Infrared identification of high-mass X-ray binaries discovered by INTEGRAL
Creators: name: Coleiro, Alexis
name: Chaty, Sylvain
name: Heras, Juan A. Zurita
name: Rahoui, Farid
name: Tomsick, John A.
Publisher: name: arXiv
Year: 2013
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Since it started observing the sky, the INTEGRAL satellite has discovered new categories of high mass X-ray binaries (HMXB) in our Galaxy. These observations raise important questions on the formation and evolution of these rare and short-lived objects. We present here new infrared observations from which to reveal or constrain the nature of 15 INTEGRAL sources, which allow us to update and discuss the Galactic HMXB population statistics. After previous photometric and spectroscopic observing campaigns in the optical and near-infrared, new photometry and spectroscopy was performed in the near-infrared with the SofI instrument on the ESO/NTT telescope in 2008 and 2010 on a sample of INTEGRAL sources. These observations, and specifically the detection of certain features in the spectra, allow the identification of these high-energy objects by comparison with published nIR spectral atlases of O and B stars. We present photometric data of nine sources (IGR J10101-5654, IGR J11187-5438, IGR J11435-6109, IGR J14331-6112, IGR J16328-4726, IGR J17200-3116, IGR J17354-3255, IGR J17404-3655, and IGR J17586-2129) and spectroscopic observations of 13 sources (IGR J10101-5654, IGR J11435-6109, IGR J13020-6359, IGR J14331-6112, IGR J14488-5942, IGR J16195-4945, IGR J16318-4848, IGR J16320-4751, IGR J16328-4726, IGR J16418-4532, IGR J17354-3255, IGR J17404-3655, and IGR J17586-2129). Our spectroscopic measurements indicate that: five of these objects are Oe/Be high-mass X-ray binaries (BeHMXB), six are supergiant high-mass X-ray binaries (sgHMXB), and two are sgB[e]. From a statistical point of view, we estimate the proportion of confirmed sgHMXB to be 42% and that of the confirmed BeHMXB to be 49%. The remaining 9% are peculiar HMXB.
description: Accepted for publication in A&A (in press)
JOURNAL OF NURSERY AND PRIMARY EDUCATION INSTRUCTORS IN NIGERIA (JNPEIN) VOL. 5 (1) ISSN - 2437-1475
Creators: name: Otitolaiye, Ademola
name: Fowowe, Sunday Simeon
Publisher: name: figshare
Year: 2022
Subjects: Other education not elsewhere classified

description: JOURNAL OF NURSERY AND PRIMARY EDUCATION INSTRUCTORS IN NIGERIA (JNPEIN) VOL. 5 (1) ISSN - 2437-1475
Multivariate stochastic volatility modelling using Wishart autoregressive processes
Creators: name: Triantafyllopoulos, K.
Publisher: name: arXiv
Year: 2013
Subjects: subject: Computational Finance (q-fin.CP)
subject: Methodology (stat.ME)
subject: FOS: Economics and business
subject: FOS: Computer and information sciences

description: A new multivariate stochastic volatility estimation procedure for financial time series is proposed. A Wishart autoregressive process is considered for the volatility precision covariance matrix, for the estimation of which a two step procedure is adopted. The first step is the conditional inference on the autoregressive parameters and the second step is the unconditional inference, based on a Newton-Raphson iterative algorithm. The proposed methodology, which is mostly Bayesian, is suitable for medium dimensional data and it bridges the gap between closed-form estimation and simulation-based estimation algorithms. An example, consisting of foreign exchange rates data, illustrates the proposed methodology.
description: 29 pages, 3 figures, 2 tables
JOURNAL OF NURSERY AND PRIMARY EDUCATION INSTRUCTORS IN NIGERIA (JNPEIN) VOL. 5 (1) ISSN - 2437-1475
Creators: name: Otitolaiye, Ademola
name: Fowowe, Sunday Simeon
Publisher: name: figshare
Year: 2022

description: JOURNAL OF NURSERY AND PRIMARY EDUCATION INSTRUCTORS IN NIGERIA (JNPEIN) VOL. 5 (1) ISSN - 2437-1475
Additional file 1 of 68Ga, 44Sc and 177Lu-labeled AAZTA5-PSMA-617: synthesis, radiolabeling, stability and cell binding compared to DOTA-PSMA-617 analogues
Creators: name: Jean-Philippe Sinnes
name: Bauder-Wüst, Ulrike
name: Schäfer, Martin
name: Euy Sung Moon
name: Kopka, Klaus
name: Rösch, Frank
Publisher: name: figshare
Year: 2020
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Neuroscience
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: FOS: Biological sciences
subject: Computational Biology

description: Additional file 1: Figure 1. Internalization data of the 44Sc complexes of AAZTA5-PSMA-617, AAZTA5 and PSMA-617 in PC3 cells at 37 °C and 4 °C. Figure 2. Internalization data of the 177Lu complexes of AAZTA5-PSMA-617, AAZTA5 and PSMA-617 in PC3 cells at 37 °C and 4 °C. Figure 3. Internalization data of the 68Ga, 44Sc and 177Lu complexes of AAZTA5-PSMA-617 and PSMA-617 in LNCaP cells at 37 °C and 4 °C. Figure 4. radio-HPLC spectra of [68Ga]Ga-AAZTA5-PSMA with linear gradient condition of 5–95% MeCN (+ 0.1% TFA)/95–5% Water (+ 0.1% TFA) in 10 min, 1 mL/min, tR = 10 min. Figure 5. radio-HPLC spectra of [44Sc]Sc-AAZTA5-PSMA with linear gradient condition of 5–95% MeCN (+ 0.1% TFA)/95–5% Water (+ 0.1% TFA) in 10 min, 1 mL/min, tR = 10.5 min. Figure 6. radio-HPLC spectra of [177Lu]Lu-AAZTA5-PSMA with linear gradient condition of 5–95% MeCN (+ 0.1% TFA)/95–5% Water (+ 0.1% TFA) in 10 min, 1 mL/min, tR = 10 min. Table 1. Stability values of 68Ga complexes of AAZTA5, AAZTA5-TOC and AAZTA5-PSMA-617. Table 2. Stability values of 44Sc and 177Lu complexes of AAZTA5, AAZTA5-TOC and AAZTA5-PSMA-617