cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Supplemental Information
Creators: name: Buselli, Christina
name: Ahern-Rindell, Amelia
Publisher: name: figshare
Year: 2025
Subjects: classificationCode: 390113
subject: Science, technology and engineering curriculum and pedagogy
classificationCode: 390107
subject: Humanities and social sciences curriculum and pedagogy (excl. economics, business and management)
classificationCode: 310599
subject: Genetics not elsewhere classified

description: This survey project was designed to evaluate undergraduate student opinions about the ethical implications of using CRISPR gene-editing technology in research and beyond. The survey was disseminated to Biology and Non-Biology STEM majors at the University of Portland in Portland, Oregon during the 2021-2022 academic year. The findings from this survey study were further explored in the manuscript titled Transdisciplinary Undergraduate Research Facilitates Convergence Education and Ethical Training for Students. A copy of the survey titled Exploring the Ethical Implications of CRISPR in Research and the Treatment of Genetic Disorders along with a summary of the Chi-Square Tests of Independence for the individual survey statements analyzed in our manuscript are included in this Supplemental Information.
Cosmological abundance of the QCD axion coupled to hidden photons
Creators: name: Kitajima, Naoya
name: Sekiguchi, Toyokazu
name: Takahashi, Fuminobu
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We study the cosmological evolution of the QCD axion coupled to hidden photons. For a moderately strong coupling, the motion of the axion field leads to an explosive production of hidden photons by tachyonic instability. We use lattice simulations to evaluate the cosmological abundance of the QCD axion. In doing so, we incorporate the backreaction of the produced hidden photons on the axion dynamics, which becomes significant in the non-linear regime. We find that the axion abundance is suppressed by at most ${\cal O}(10^{2})$ for the decay constant $f_a = 10^{16}$ GeV, compared to the case without the coupling. For a sufficiently large coupling, the motion of the QCD axion becomes strongly damped, and as a result, the axion abundance is enhanced. Our results show that the cosmological upper bound on the axion decay constant can be relaxed by a few hundred for a certain range of the coupling to hidden photons.
description: 5 pages, 3 figures, v2: accepted for publication in PLB
Determinants of coffee export in Ethiopia: an application of co-integration and vector error correction approach
Creators: name: Bassa, Zekarias
name: Goshu, Degye
name: Bassa, Zekarias
name: Goshu, Degye
Publisher: name: Unknown
Year: 2019
Subjects: subject: Agribusiness
subject: Agricultural and Food Policy
subject: coffee
subject: co-integration
subject: export
subject: long run
subject: short run
subject: vector error correction model

description: Purpose. The study aimed to analyze the determinants of coffee export through the variables of coffee production, trade openness, world coffee export in tone, population and export prices for the period of 1977–2016 for 38 observations. Methodology / approach. The co-integration approach was employed to investigate the long-run causal association between Ethiopian coffee export in kg and export price, world coffee export level, population and coffee production, trade openness. The coffee export demand functions in Ethiopia were estimated using co-integration analysis and Vector Error Correction Models. Results. The co-integration result confirmed the existence of a long-run relationship between Quantity Ethiopian coffee exported and export price, coffee production world export coffee in tone and population size of age between 15 to 64. The analysis pointed out that in the long run the extent of Ethiopia coffee export inversely related to coffee production in the country and world coffee supply in tone and directly related to export price and population size of active aged category. The speed of adjustment was estimated to be 24 % that implied the economy will converge towards the long run equilibrium in approximately one year following a shock. Originality / scientific novelty. The empirical analysis indicated the existence of short term causal link from lagged export level of coffee, population size of active labour force, trade opens and export price towards export in the coffee export model. In short run Ethiopian coffee export defined as positive function of trade opens and negative function of lagged year coffee export in tone, export price and population size of active labour force in the country. Practical value / implications. The policy implication of the time series analysis calls for improved works on value addition and productivity improvement to respond for soaring national and international demand and betterment in trade relation with nations abroad that expected to optimization of the organic attributes of Ethiopian coffee in sustainable manner. The Vector Error Correction Model also indicated a significant short-run as well as long run relationship between changes in exports and changes in export price and population size.
Robust unmixing of tumor states in array comparative genomic hybridization data.
Creators: name: Tolliver, David
name: Tsourakakis, Charalampos E.
name: Ayshwarya  Subramanian
name: Shackney, Stanley E.
name: Schwartz, Russell
Publisher: name: Carnegie Mellon University
Year: 2010
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: MOTIVATION: Tumorigenesis is an evolutionary process by which tumor cells acquire sequences of mutations leading to increased growth, invasiveness and eventually metastasis. It is hoped that by identifying the common patterns of mutations underlying major cancer sub-types, we can better understand the molecular basis of tumor development and identify new diagnostics and therapeutic targets. This goal has motivated several attempts to apply evolutionary tree reconstruction methods to assays of tumor state. Inference of tumor evolution is in principle aided by the fact that tumors are heterogeneous, retaining remnant populations of different stages along their development along with contaminating healthy cell populations. In practice, though, this heterogeneity complicates interpretation of tumor data because distinct cell types are conflated by common methods for assaying the tumor state. We previously proposed a method to computationally infer cell populations from measures of tumor-wide gene expression through a geometric interpretation of mixture type separation, but this approach deals poorly with noisy and outlier data. RESULTS: In the present work, we propose a new method to perform tumor mixture separation efficiently and robustly to an experimental error. The method builds on the prior geometric approach but uses a novel objective function allowing for robust fits that greatly reduces the sensitivity to noise and outliers. We further develop an efficient gradient optimization method to optimize this 'soft geometric unmixing' objective for measurements of tumor DNA copy numbers assessed by array comparative genomic hybridization (aCGH) data. We show, on a combination of semi-synthetic and real data, that the method yields fast and accurate separation of tumor states. CONCLUSIONS: We have shown a novel objective function and optimization method for the robust separation of tumor sub-types from aCGH data and have shown that the method provides fast, accurate reconstruction of tumor states from mixed samples. Better solutions to this problem can be expected to improve our ability to accurately identify genetic abnormalities in primary tumor samples and to infer patterns of tumor evolution. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Supplemental Information
Creators: name: Buselli, Christina
name: Ahern-Rindell, Amelia
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 390113
subject: Science, technology and engineering curriculum and pedagogy
classificationCode: 390107
subject: Humanities and social sciences curriculum and pedagogy (excl. economics, business and management)
classificationCode: 310599
subject: Genetics not elsewhere classified

description: This survey project was designed to evaluate undergraduate student opinions about the ethical implications of using CRISPR gene-editing technology in research and beyond. The survey was disseminated to Biology and Non-Biology STEM majors at the University of Portland in Portland, Oregon during the 2021-2022 academic year. The findings from this survey study were further explored in the manuscript titled Transdisciplinary Undergraduate Research Facilitates Convergence Education and Ethical Training for Students. A copy of the survey titled Exploring the Ethical Implications of CRISPR in Research and the Treatment of Genetic Disorders along with a summary of the Chi-Square Tests of Independence for the individual survey statements analyzed in our manuscript are included in this Supplemental Information.
Une base symétrique de l'algèbre des coinvariants quasi-symétriques
Creators: name: Chapoton, Frédéric
Publisher: name: arXiv
Year: 2005
Subjects: subject: Quantum Algebra (math.QA)
subject: Combinatorics (math.CO)
subject: FOS: Mathematics
subject: 05E

description: We describe a new basis of the ring of quasi-symmetric coinvariants, which is stable by the natural reversal of the set of variables. The indexing set is the set of triangulations of a regular polygon, instead of the set of Dyck paths used for the known basis. On décrit une nouvelle base de l'algèbre des coinvariants quasi-symétriques, qui est stable par l'involution naturelle et indexée par les triangulations d'un polygone régulier.
description: 6 pages, 2 figures
Our great motherland is thriving (伟大祖国 欣欣向荣)
Creators: name: Xu Changming 徐昌明
name: Ren Meijun 任美君
Publisher: name: University of Victoria Libraries
Year: 2022
Subjects: subject: Industrial productivity
valueUri: http://id.worldcat.org/fast/971502
subject: Industries
valueUri: http://id.worldcat.org/fast/971852
subject: Industrialization
subject: Modernization

description: A range of citizens are shown against an idealized industrial backdrop with the national emblem. Price: 14 fen
Lilium canadense Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Liliales
Liliaceae
Lilium
Lilium canadense

description: Lilium canadense Linnaeus, Species Plantarum 1: 303. 1753.
"Habitat in Canada." RCN: 2390.
 Lectotype (Adams & Dress in Baileya 21: 172. 1982): Kalm, Herb. Linn. No. 420.6 (LINN).
 Current name: Lilium canadense L. (Liliaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part L), pp. 610-650 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 632, DOI: 10.5281/zenodo.291971
Braid action on derived category of Nakayama algebras
Creators: name: Muchtadi-Alamsyah, Intan
Publisher: name: arXiv
Year: 2005
Subjects: subject: Representation Theory (math.RT)
subject: Rings and Algebras (math.RA)
subject: FOS: Mathematics
subject: 16D90,16G20,18E30,20F36

description: We construct an action of a braid group associated to a complete graph on the derived category of a certain symmetric Nakayama algebra which is also a Brauer star algebra with no exceptional vertex. We connect this action with the affine braid group action on Brauer star algebras defined by Schaps and Zakay-Illouz. We show that for Brauer star algebras with no exceptional vertex, the action is faithful.
description: 27 pages
Sim-to-Real Transfer of Robotic Control with Dynamics Randomization
Creators: name: Peng, Xue Bin
name: Andrychowicz, Marcin
name: Zaremba, Wojciech
name: Abbeel, Pieter
Publisher: name: arXiv
Year: 2017
Subjects: subject: Robotics (cs.RO)
subject: Systems and Control (eess.SY)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: Simulations are attractive environments for training agents as they provide an abundant source of data and alleviate certain safety concerns during the training process. But the behaviours developed by agents in simulation are often specific to the characteristics of the simulator. Due to modeling error, strategies that are successful in simulation may not transfer to their real world counterparts. In this paper, we demonstrate a simple method to bridge this "reality gap". By randomizing the dynamics of the simulator during training, we are able to develop policies that are capable of adapting to very different dynamics, including ones that differ significantly from the dynamics on which the policies were trained. This adaptivity enables the policies to generalize to the dynamics of the real world without any training on the physical system. Our approach is demonstrated on an object pushing task using a robotic arm. Despite being trained exclusively in simulation, our policies are able to maintain a similar level of performance when deployed on a real robot, reliably moving an object to a desired location from random initial configurations. We explore the impact of various design decisions and show that the resulting policies are robust to significant calibration error.
Flavor and CP violating Z exchange and the rate asymmetry in B --> phi K_S
Creators: name: Deshpande, N. G.
name: Ghosh, D. K.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Recent measurements of time dependent CP asymmetry in B --> phi K_S, if confirmed, would indicate a new source of CP violation. We examine flavor violating tree-level Z currents in models with extra down-type quark singlets that arise naturally in string compactified gauge groups like E_6. We evaluate the new operators at the scale mu = m_b in NLO, and using QCD improved factorization to describe B --> phi K_S, find the allowed range of parameters for rho and psi, the magnitude and phase of the flavor violating parameter U_{bs}. This allowed range does satisfy the constraint from flavor changing process b --> s l+ l- . However, further improvement in measurement of these rates could severely constrain the model.
description: 15 pages, Latex, 2 postscript figures. Sections 2 and 3 are reordered. More references are added. Version to be published in PLB
title: 02_1255
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
The formation of an eccentric gap in a gas disk by a planet in an eccentric orbit
Creators: name: Hosseinbor, A. Pasha
name: Edgar, Richard
name: Quillen, Alice
name: LaPage, Amanda
Publisher: name: arXiv
Year: 2006
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We investigate the effect of a planet on an eccentric orbit on a two dimensional low mass gaseous disk. At a planet eccentricity above the planet's Hill radius divided by its semi-major axis, we find that the disk morphology differs from that exhibited by a disk containing a planet in a circular orbit. An eccentric gap is created with eccentricity that can exceed the planet's eccentricity and precesses with respect to the planet's orbit. We find that a more massive planet is required to open a gap when the planet is on an eccentric orbit. We attribute this behavior to spiral density waves excited at corotation resonances that increase the disk's eccentricity and exert a torque opposite in sign to that exerted by the Lindblad resonances. The reduced torque makes it more difficult for waves driven by the planet to overcome viscous inflow in the disk. Spectral energy distributions of transitional disks may reveal the presence of an eccentric planet if they are matched by an inner edge comprising a range of temperatures set by the semi-major axis and eccentricity of the hole.
description: Submitted to MNRAS
Additional file 6 of The effects of genital myiasis on the diversity of the vaginal microbiota in female Bactrian camels
Creators: name: Zhi, Likang
name: Ai, Dongdong
name: Yong, Ming
name: Bao, Huar
name: Han, Baoxiang
name: Sun, Bo
name: Tu, Ya
name: Er, Demtu
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Additional file 6.
Testing Fermion Universality at a Conformal Fixed Point
Creators: name: Hasenfratz, Anna
name: Rebbi, Claudio
name: Witzel, Oliver
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: Universality of various fermion formulations is well established in QCD-like theories defined around the perturbative $g^2=0$ fixed point. These arguments do not apply for conformal systems that exhibit an infrared fixed point at non-vanishing $g^2$ coupling. We investigate the step scaling function for systems with 10 or 12 fundamental flavors using domain wall fermions and compare it to perturbative predictions. We test universality by contrasting our findings to results published in the literature based on staggered fermions.
description: Talk given at the 35th International Symposium on Lattice Field Theory, 18 - 24 June 2017, Granada, Spain ; 8 pages
Localizable Effective Theories, Bootstrap and the Parameters of Hadron Resonances
Creators: name: Semenov-Tian-Shanski, K.
name: Vereshagin, A.
name: Vereshagin, V.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We discuss the basic principles of constructing a meaningful perturbative scheme for effective theory. The main goal of this talk is to explain the approach and to present recent results obtained with the help of the method of Cauchy forms in several complex variables.
description: 6 pages, Talk given at the X. International Conference On Hadron spectroscopy (HADRON'03), August 31 - September 6, 2003, Aschaffenburg, Germany; to appear in Proceedings
Abundance analysis of a CEMP-no star in the Carina dwarf spheroidal galaxy
Creators: name: Susmitha, A.
name: Koch, A.
name: Sivarani, T.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Carbon-enhanced metal-poor (CEMP) stars bear important imprints of the early chemical enrichment of any stellar system. While these stars are known to exist in copious amounts in the Milky Way halo, detailed chemical abundance data from the faint dwarf spheroidal (dSph) satellites are still sparse, although the relative fraction of these stars increases with decreasing metallicity. Here, we report the abundance analysis of a metal-poor ([Fe/H]=$-2.5$ dex), carbon-rich ([C/Fe]=1.4 dex) star, ALW-8, in the Carina dSph using high-resolution spectroscopy obtained with the ESO/UVES instrument. Its spectrum does not indicate any over-enhancements of neutron capture elements. Thus classified as a CEMP-no star, this is the first detection of this kind of star in Carina. Another of our sample stars, ALW-1, is shown to be a CEMP-$s$ star, but its immediate binarity prompted us to discard it from a detailed analysis. The majority of the 18 chemical elements we measured are typical of Carina's field star population and also agree with CEMP stars in other dSph galaxies. Similar to the only known CEMP-no star in the Sculptor dSph and the weak-$r$-process star HD 122563, the lack of any strong barium-enhancement is accompanied by a moderate overabundance in yttrium, indicating a weak $r$-process activity. The overall abundance pattern confirms that, also in Carina, the formation site for CEMP-no stars has been affected by both faint supernovae and by standard core collapse supernovae. Whichever process was responsible for the heavy element production in ALW-8 must be a ubiquitous source to pollute the CEMP-no stars, acting independently of the environment such as in the Galactic halo or in dSphs.
description: Accepted for publication in A&A
RNA structure and the mechanisms of alternative splicing.
Creators: name: C. Joel McManus
name: Graveley, Brenton R.
Publisher: name: Carnegie Mellon University
Year: 2011
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Alternative splicing is a widespread means of increasing protein diversity and regulating gene expression in eukaryotes. Much progress has been made in understanding the proteins involved in regulating alternative splicing, the sequences they bind to, and how these interactions lead to changes in splicing patterns. However, several recent studies have identified other players involved in regulating alternative splicing. A major theme emerging from these studies is that RNA secondary structures play an under appreciated role in the regulation of alternative splicing. This review provides an overview of the basic aspects of splicing regulation and highlights recent progress in understanding the role of RNA secondary structure in this process.
title: ADCO, Cinquième cartulaire de Saint-Étienne de Dijon (1664), Cart. 28 (G 132), 258 folios, f. 00457
Creators: name: de la Côte d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Cinquième cartulaire de Saint-Étienne de Dijon (1664), Archives départementales de la Côte-d'Or, Cart. 28 (G 132), 258 folios, f. 00457, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cinquième cartulaire de Saint-Étienne de Dijon (1664), Archives départementales de la Côte-d'Or, Cart. 28 (G 132), 258 folios, f. 00457, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https://manuscrits.cbma-project.eu/
description: Provenance: abbaye Saint-Étienne de Dijon
description: Provenance: http://www.wikidata.org/entity/Q15945019
Critical potentials of the eigenvalues and eigenvalue gaps of Schrödinger operators
Creators: name: Soufi, Ahmad El
name: Moukadem, Nazih
Publisher: name: arXiv
Year: 2005
Subjects: subject: Metric Geometry (math.MG)
subject: Mathematical Physics (math-ph)
subject: FOS: Mathematics
subject: FOS: Physical sciences
subject: MSC (1991): 35J10, 35P15, 49R50, 58J50

description: Let $M$ be a compact Riemannian manifold with or without boundary, and let $-Δ$ be its Laplace-Beltrami operator. For any bounded scalar potential $q$, we denote by $λ\_i(q)$ the $i$-th eigenvalue of the Schrödinger type operator $-Δ+ q$ acting on functions with Dirichlet or Neumann boundary conditions in case $\partial M \neq \emptyset$. We investigate critical potentials of the eigenvalues $λ\_i$ and the eigenvalue gaps $G\_{ij}=λ\_j -λ\_i$ considered as functionals on the set of bounded potentials having a given mean value on $M$. We give necessary and sufficient conditions for a potential $q$ to be critical or to be a local minimizer or a local maximizer of these functionals. For instance, we prove that a potential $q \in L^\infty (M)$ is critical for the functional $λ\_2$ if and only if, $q$ is smooth, $λ\_2(q)=λ\_3(q)$ and there exist second eigenfunctions $f\_1 ,...,f\_k$ of $-Δ+ q$ such that $Σ\_j f\_j^2 = 1$. In particular, $λ\_2$ (as well as any $λ\_i$) admits no critical potentials under Dirichlet Boundary conditions. Moreover, the functional $λ\_2$ never admits locally minimizing potentials.
Lilium candidum Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Liliales
Liliaceae
Lilium
Lilium candidum

description: Lilium candidum Linnaeus, Species Plantarum 1: 302. 1753.
"Habitat in Palaestina, Syria." RCN: 2384.
Type not designated.
Original material: Herb. A. van Royen No. 913.62-563 (L); Herb. Linn. No. 420.1 (LINN); Herb. Burser III: 114 (UPS); Herb. Burser III: 113 (UPS); [icon] in Dodoëns, Stirp. Hist. Pempt., ed. 2: 197. 1616.
 Generitype of Lilium Linnaeus (vide Hitchcock, Prop. Brit. Bot.: 145. 1929).
 Current name: Lilium candidum L. (Liliaceae).
 Note: Dasgupta & Deb (in Candollea 39: 488. 1984) indicated 421.1 (LINN) as type, but this is material linked with Fritillaria and not original material for this name.
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part L), pp. 610-650 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 632, DOI: 10.5281/zenodo.291971
Comparative analysis of codon usage between Gossypium hirsutum and G. barbadense mitochondrial genomes
Creators: name: Chen, Zhiwen
name: Zhao, Jianguo
name: Qiao, Jun
name: Li, Weijia
name: Li, Jingwei
name: Xu, Ran
name: Wang, Haiyan
name: Liu, Zehui
name: Xing, Baoyan
name: Wendel, Jonathan F.
name: Grover, Corrinne E.
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences

description: Gossypium hirsutum and G. barbadense mitochondrial genomes were analyzed to understand the factors shaping codon usage. While most analyses of codon usage suggest minimal to no bias, nucleotide composition, specifically GC content, was significantly correlated with codon usage. In general, both mitochondrial genomes favor codons that end in A or U, with a secondary preference for pyrimidine rich codons. These observations are similar to previous reports of codon usage in cotton nuclear genomes, possibly suggestive of a general bias spanning genomic compartment. Although evidence for codon usage bias is weak for most genes, we identified six genes (i.e. atp8, atp9, sdh3, sdh4, mttB and rpl2) with significant nonrandom codon usage. In general, we find multiple factors that influence cotton mitochondrial genome codon usage, which may include selection in a subset of genes.
RNA deep sequencing reveals differential microRNA expression during development of sea urchin and sea star.
Creators: name: Kadri, Sabah
name: Hinman, Veronica F.
name: Benos, Panayiotis V.
Publisher: name: Carnegie Mellon University
Year: 2011
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: microRNAs (miRNAs) are small (20-23 nt), non-coding single stranded RNA molecules that act as post-transcriptional regulators of mRNA gene expression. They have been implicated in regulation of developmental processes in diverse organisms. The echinoderms, Strongylocentrotus purpuratus (sea urchin) and Patiria miniata (sea star) are excellent model organisms for studying development with well-characterized transcriptional networks. However, to date, nothing is known about the role of miRNAs during development in these organisms, except that the genes that are involved in the miRNA biogenesis pathway are expressed during their developmental stages. In this paper, we used Illumina Genome Analyzer (Illumina, Inc.) to sequence small RNA libraries in mixed stage population of embryos from one to three days after fertilization of sea urchin and sea star (total of 22,670,000 reads). Analysis of these data revealed the miRNA populations in these two species. We found that 47 and 38 known miRNAs are expressed in sea urchin and sea star, respectively, during early development (32 in common). We also found 13 potentially novel miRNAs in the sea urchin embryonic library. miRNA expression is generally conserved between the two species during development, but 7 miRNAs are highly expressed in only one species. We expect that our two datasets will be a valuable resource for everyone working in the field of developmental biology and the regulatory networks that affect it. The computational pipeline to analyze Illumina reads is available at http://www.benoslab.pitt.edu/services.html.
Hybrid protoneutron stars with the MIT bag model
Creators: name: Nicotra, O. E.
name: Baldo, M.
name: Burgio, G. F.
name: Schulze, H. -J.
Publisher: name: arXiv
Year: 2006
Subjects: subject: Astrophysics (astro-ph)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We study the hadron-quark phase transition in the interior of protoneutron stars. For the hadronic sector, we use a microscopic equation of state involving nucleons and hyperons derived within the finite-temperature Brueckner-Bethe-Goldstone many-body theory, with realistic two-body and three-body forces. For the description of quark matter, we employ the MIT bag model both with a constant and a density-dependent bag parameter. We calculate the structure of protostars with the equation of state comprising both phases and find maximum masses below 1.6 solar masses. Metastable heavy hybrid protostars are not found.
description: 12 pages, 9 figures submitted to Phys. Rev. D
A Stochastic Model of Epigenetic Dynamics in Somatic Cell Reprogramming
Creators: name: Flöttmann, Max
name: Scharp, Till
name: Klipp, Edda
Publisher: name: Humboldt-Universität zu Berlin
Year: 2012
Subjects: subject: differentiation and reprogramming
subject: epigenetic landscape
subject: induced pluripotent stem cells
subject: mathematical modeling
subject: probabilistic Boolean network
subject: 610 Medizin und Gesundheit

description: Somatic cell reprogramming has dramatically changed stem cell research in recent years. The high pace of new findings in the field and an ever increasing amount of data from new high throughput techniques make it challenging to isolate core principles of the process. In order to analyze such mechanisms, we developed an abstract mechanistic model of a subset of the known regulatory processes during cell differentiation and production of induced pluripotent stem cells. This probabilistic Boolean network describes the interplay between gene expression, chromatin modifications, and DNA methylation. The model incorporates recent findings in epigenetics and partially reproduces experimentally observed reprogramming efficiencies and changes in methylation and chromatin remodeling. It enables us to investigate, how the temporal progression of the process is regulated. It also explicitly includes the transduction of factors using viral vectors and their silencing in reprogrammed cells, since this is still a standard procedure in somatic cell reprogramming. Based on the model we calculate an epigenetic landscape for probabilities of cell states. Simulation results show good reproduction of experimental observations during reprogramming, despite the simple structure of the model. An extensive analysis and introduced variations hint toward possible optimizations of the process that could push the technique closer to clinical applications. Faster changes in DNA methylation increase the speed of reprogramming at the expense of efficiency, while accelerated chromatin modifications moderately improve efficiency.
title: ADCO, Cartulaire de Cîteaux pour les possessions de Chaugey et Maison-Dieu (Fin XVe siècle), Cart. 181 (11 H 754), 165 folios, f. 0221
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédéric
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2017
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: cartulaire
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Cartulaire de Cîteaux pour les possessions de Chaugey et Maison-Dieu (Fin XVe siècle), Archives départementales de la Côte-d'Or, Cart. 181 (11 H 754), 165 folios, f. 0221, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de Cîteaux pour les possessions de Chaugey et Maison-Dieu (Fin XVe siècle), Archives départementales de la Côte-d'Or, Cart. 181 (11 H 754), 165 folios, f. 0221, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Analysis of expenditure path beyond staple foods consumption in Nigeria
Creators: name: Ikudayisi, Adesola
name: Omotola, Aderonke
name: Ikudayisi, Adesola
name: Omotola, Aderonke
Publisher: name: Unknown
Year: 2019
Subjects: subject: Agribusiness
subject: Food expenditure
subject: Urban households
subject: Budget share
subject: Nutrition

description: Purpose. This study investigates the food expenditure path segmented by staples and non-staples in Nigeria. Methodology / approach. A multi-stage sampling procedure was used to sample a cross sectional data of 438 urban households from two randomly selected urbanising states in South West, Nigeria. The study used descriptive statistics such as percentages and means to determine households’ food budget shares and their per capita food expenditure Results. From the expenditure estimates, a differential effect in budget share of food was found with an increase in staples diet of Low Urban Area (LUA) households (33 %). However, consumption of non-staple foods was more pronounced among households residing in high urban areas (HUA) (35 %). Per capita food expenditure was higher for LUA households (N1377.52), while their food shares for processed cereals were equal with those of HUA. Findings suggest a more diverse diets, thus revealing a quality-quantity nexus within urban locations. Originality / scientific novelty. This is the very study that explains urban differential beyond staple food consumption and nutritional outcome. The household food expenditure pattern brought to fore location-specific variations in urban diet in the study area. Practical value / implications. The switch away from consumption of staples was beyond income responsiveness, but, towards changes in level of urbanization. The differential path in per capita expenditures on staple and non-staples are shown to have implications on nutrition within urban areas.
Entretien de Rakan Fayiz Farhan al-Majali auprès de Hamid al-Nuwaysah à propos du diwan de Dleywan al-Majali à Karak
Creators: name: al-Nuwaysah, Hamid
name: Rakan Fayiz Farhan Al-Majali (Enquêteur)
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020

description: Source: http://www.calames.abes.fr/pub/ms/FileId-3139
description: Coverage: Karak, Jordanie
NGC 1866: First Spectroscopic Detection of Fast Rotating Stars in a Young LMC Cluster
Creators: name: Dupree, A. K.
name: Dotter, A.
name: Johnson, C. I.
name: Marino, A. F.
name: Milone, A. P.
name: Bailey, J. I.
name: Crane, J. D.
name: Mateo, M.
name: Olszewski, E. W.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: High-resolution spectroscopic observations were taken of 29 extended main sequence turn-off (eMSTO) stars in the young ($\sim$200 Myr) LMC cluster, NGC 1866 using the Michigan/Magellan Fiber System and MSpec spectrograph on the Magellan-Clay 6.5-m telescope. These spectra reveal the first direct detection of rapidly rotating stars whose presence has only been inferred from photometric studies. The eMSTO stars exhibit H-alpha emission (indicative of Be-star decretion disks), others have shallow broad H-alpha absorption (consistent with rotation $\gtrsim $150 km s$^{-1}$), or deep H-alpha core absorption signaling lower rotation velocities ($ \lesssim $150 km s$^{-1}$ ). The spectra appear consistent with two populations of stars - one rapidly rotating, and the other, younger and slowly rotating.
description: 9 pages, 4 figures, Accepted for publication in ApJ Letters
Ribosome profiling reveals post-transcriptional buffering of divergent gene expression in yeast.
Creators: name: C. Joel McManus
name: May, Gemma
name: Spealman, Pieter
name: Shteyman, Alan
Publisher: name: Carnegie Mellon University
Year: 2014
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Understanding the patterns and causes of phenotypic divergence is a central goal in evolutionary biology. Much work has shown that mRNA abundance is highly variable between closely related species. However, the extent and mechanisms of post-transcriptional gene regulatory evolution are largely unknown. Here we used ribosome profiling to compare transcript abundance and translation efficiency in two closely related yeast species (S. cerevisiae and S. paradoxus). By comparing translation regulatory divergence to interspecies differences in mRNA sequence features, we show that differences in transcript leaders and codon bias substantially contribute to divergent translation. Globally, we find that translation regulatory divergence often buffers species differences in mRNA abundance, such that ribosome occupancy is more conserved than transcript abundance. We used allele-specific ribosome profiling in interspecies hybrids to compare the relative contributions of cis- and trans-regulatory divergence to species differences in mRNA abundance and translation efficiency. The mode of gene regulatory divergence differs for these processes, as trans-regulatory changes play a greater role in divergent mRNA abundance than in divergent translation efficiency. Strikingly, most genes with aberrant transcript abundance in F1 hybrids (either over- or underexpressed compared to both parent species) did not exhibit aberrant ribosome occupancy. Our results show that interspecies differences in translation contribute substantially to the evolution of gene expression. Compensatory differences in transcript abundance and translation efficiency may increase the robustness of gene regulation.
Bootstrap and the Parameters of Pion-Nucleon Resonances
Creators: name: Semenov-Tian-Shanski, K.
name: Vereshagin, A.
name: Vereshagin, V.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: In this talk we demonstrate the results of application of the perturbative effective theory formalism developed in recent papers to the calculation of $πN$ elastic scattering amplitude. Restrictions on the contributing resonance parameters are obtained and the low energy coefficients are calculated.
description: 6 pages, talk given at the X. International Conference On Hadron Spectroscopy (HADRON'03), August 31 - September 6, 2003, Aschaffenburg, Germany; to appear in Proceedings
Additional file 1 of Debating: effective and satisfactory learning method in dentistry
Creators: name: Meschi, Marjaneh
name: Shirahmadi, Samane
name: Amiri, Mahrokh
name: Ebrahimi-Siaghi, Nikki
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Supplementary Material 1.
Proceedings Sixteenth Conference on Theoretical Aspects of Rationality and Knowledge
Creators: name: Lang, Jérôme
Publisher: name: arXiv
Year: 2017
Subjects: subject: Computer Science and Game Theory (cs.GT)
subject: Artificial Intelligence (cs.AI)
subject: Cryptography and Security (cs.CR)
subject: Logic in Computer Science (cs.LO)
subject: FOS: Computer and information sciences

description: This volume consists of papers presented at the Sixteenth Conference on Theoretical Aspects of Rationality and Knowledge (TARK) held at the University of Liverpool, UK, from July 24 to 26, 2017. TARK conferences bring together researchers from a wide variety of fields, including Computer Science (especially, Artificial Intelligence, Cryptography, Distributed Computing), Economics (especially, Decision Theory, Game Theory, Social Choice Theory), Linguistics, Philosophy (especially, Philosophical Logic), and Cognitive Psychology, in order to further understand the issues involving reasoning about rationality and knowledge.
Ribosome biogenesis in the yeast Saccharomyces cerevisiae.
Creators: name: Woolford, John
name: Baserga, Susan J.
Publisher: name: Carnegie Mellon University
Year: 2013
Subjects: subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Ribosomes are highly conserved ribonucleoprotein nanomachines that translate information in the genome to create the proteome in all cells. In yeast these complex particles contain four RNAs (>5400 nucleotides) and 79 different proteins. During the past 25 years, studies in yeast have led the way to understanding how these molecules are assembled into ribosomes in vivo. Assembly begins with transcription of ribosomal RNA in the nucleolus, where the RNA then undergoes complex pathways of folding, coupled with nucleotide modification, removal of spacer sequences, and binding to ribosomal proteins. More than 200 assembly factors and 76 small nucleolar RNAs transiently associate with assembling ribosomes, to enable their accurate and efficient construction. Following export of preribosomes from the nucleus to the cytoplasm, they undergo final stages of maturation before entering the pool of functioning ribosomes. Elaborate mechanisms exist to monitor the formation of correct structural and functional neighborhoods within ribosomes and to destroy preribosomes that fail to assemble properly. Studies of yeast ribosome biogenesis provide useful models for ribosomopathies, diseases in humans that result from failure to properly assemble ribosomes.
Methods for improving open cluster fundamental parameters applied to M 52 and NGC 3960
Creators: name: Bonatto, C.
name: Bica, E.
Publisher: name: arXiv
Year: 2006
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We derive accurate parameters related to the CMD, structure and dynamical state of M52 and NGC3960, whose fields are affected by differential reddening. Compared to open clusters in different dynamical states studied with similar methods, the core and overall parameters of M52 are consistent with an open cluster more massive than 1000Mo and ~60Myr old, with some mass segregation in the inner region. The core of NGC3960 is in an advanced dynamical state with strong mass segregation in the core/halo region, while the somewhat flat overall MF (x~1.07) suggests low-mass star evaporation. The excess stellar density in the core may suggest post-core collapse. The dynamical evolution of NGC3960 may have been accelerated by the tidal Galactic field, since it lies \~0.5kpc inside the Solar circle.
description: 15 pages and 8 figures. Astronomy and astrophysics, in press
Growth of the eigensolutions of Laplacians on Riemannian manifolds I: construction of energy function
Creators: name: Liu, Wencai
Publisher: name: arXiv
Year: 2017
Subjects: subject: Differential Geometry (math.DG)
subject: FOS: Mathematics

description: In this paper, we consider the eigen-solutions of $-Δu+ Vu=λu$, where $Δ$ is the Laplacian on a non-compact complete Riemannian manifold. We develop Kato's methods on manifold and establish the growth of the eigen-solutions as $r$ goes to infinity based on the asymptotical behaviors of $Δr$ and $V(x)$, where $r=r(x)$ is the distance function on the manifold. As applications, we prove several criteria of absence of eigenvalues of Laplacian, including a new proof of the absence of eigenvalues embedded into the essential spectra of free Laplacian if the radial curvature of the manifold satisfies $ K_{\rm rad}(r)= -1+\frac{o(1)}{r}$.
description: IMRN to appear