cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Cornejo.etal.2019.E.heatwolei.Ytranscripts
Creators: name: Cortez, Diego
name: Cortez, Diego
Publisher: name: figshare
Year: 2020
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences

description: The text file contains the Y-linked sequences found in Eulamprus heatwolei.
Remarks on the mixed Ramond -Ramond, open string scattering amplitudes of BPS, non-BPS and brane-anti brane
Creators: name: Hatefi, Ehsan
Publisher: name: arXiv
Year: 2015
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: From the world-sheet point of view we compute three, four and five point BPS and non-BPS scattering amplitudes of type IIA and IIB superstring theory. All these the mixed S-matrix elements including a closed string Ramond-Ramond (RR) in the bulk and a scalar/gauge or tachyons with their all different pictures ( including RR in asymmetric and symmetric pictures) have been carried out. We have also shown that in asymmetric pictures various equations must be kept fixed. More importantly, by direct calculations on upper half plane, it is realized that some of the equations (that must be true) for BPS branes can not be necessarily applied to non-BPS amplitudes. We also derive the S-Matrix elements of $$ and clarify the fact that in the presence of the scalar field and RR, the terms carrying momentum of RR in transverse directions play important role in the entire form of the S-matrix and their presence is needed in order to have gauge invariance for the entire S-matrix elements of type IIA (IIB) superstring theory.
description: 37 pages,no figure, Latex file. V2:The logical ideas are clarified , the version is accepted in EPJC
решение вопросов экологии
Creators: name: елена,
Publisher: name: Zenodo
Year: 2020

description: Данная презентация является результатом реализации проекта Королевой Елены Николаевны по теме "Решение экологических проблем" в рамках онлайн-курса "Компьютерные технологии в биологии" (https://stepik.org/course/promo)
Additional file 5 of Bayesian spatial modelling of malaria burden in two contrasted eco-epidemiological facies in Benin (West Africa): call for localized interventions
Creators: name: Damien, Barikissou Georgia
name: Sode, Akoeugnigan Idelphonse
name: Bocossa, Daniel
name: Elanga-Ndille, Emmanuel
name: Aguemon, Badirou
name: Corbel, Vincent
name: Henry, Marie-Claire
name: Glèlè Kakaï, Romain Lucas
name: Remoué, Franck
Publisher: name: figshare
Year: 2022
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: FOS: Biological sciences
subject: Computational Biology

description: Additional file 5: Table A4. Bayesian binomial model with random noises fitted to the DCO data
Probing critical point energies of transition metal dichalcogenides: surprising indirect gap of single layer $SL-WSe_2$
Creators: name: Zhang, Chendong
name: Chen, Yuxuan
name: Johnson, Amber
name: Li, Ming-Yang
name: Li, Lain-Jong
name: Mende, Patrick C.
name: Feenstra, Randall M.
name: Shih, Chih-Kang
Publisher: name: arXiv
Year: 2014
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Understanding quasiparticle band structures of transition metal dichalcogenides (TMDs) is critical for technological advances of these materials for atomic layer electronics and photonics. Although theoretical calculations to date have shown qualitatively similar features, there exist subtle differences which can lead to important consequences in the device characteristics. For example, most calculations have shown that all single layer (SL) TMDs have direct band gaps, while some have shown that $SL-WSe_2$ have an indirect gap. Moreover, there are large variations in the reported quasiparticle gaps, corresponding to large variations in exciton binding energies. By using a comprehensive form of scanning tunneling spectroscopy, we have revealed detailed quasiparticle electronic structures in TMDs, including the quasi-particle gaps, critical point energy locations and their origins in the Brillouin Zones (BZs). We show that $SL-WSe_2$ actually has an indirect quasi-particle gap with the conduction band minimum located at the Q point (instead of K), albeit the two states are nearly degenerate. Its implications on optical properties are discussed. We have further observed rich quasi-particle electronic structures of TMDs as a function of atomic structures and spin-orbital couplings.
description: 27 pages, 4 figures and one table, supplementary information appended
Dr Wenowdis: Specializing dynamic language C extensions using type information
Creators: name: Bernstein, Maxwell
name: Bolz-Tereick, CF
Publisher: name: arXiv
Year: 2024
Subjects: subject: Programming Languages (cs.PL)
subject: FOS: Computer and information sciences
subject: D.3.4

description: C-based interpreters such as CPython make extensive use of C "extension" code, which is opaque to static analysis tools and faster runtimes with JIT compilers, such as PyPy. Not only are the extensions opaque, but the interface between the dynamic language types and the C types can introduce impedance. We hypothesise that frequent calls to C extension code introduce significant overhead that is often unnecessary. We validate this hypothesis by introducing a simple technique, "typed methods", which allow selected C extension functions to have additional metadata attached to them in a backward-compatible way. This additional metadata makes it much easier for a JIT compiler (and as we show, even an interpreter!) to significantly reduce the call and return overhead. Although we have prototyped typed methods in PyPy, we suspect that the same technique is applicable to a wider variety of language runtimes and that the information can also be consumed by static analysis tooling.
Additional file 1 of InterMob: a 24-month randomised controlled trial comparing the effectiveness of an intervention including behavioural change techniques and free transport versus an intervention including air pollution awareness-raising on car use reduction among regular car users living in Grenoble, France
Creators: name: Teran-Escobar, Claudia
name: Duché, Sarah
name: Bouscasse, Hélène
name: Isoard-Gatheur, Sandrine
name: Juen, Patrick
name: Lacoste, Lilas
name: Lyon-Caen, Sarah
name: Mathy, Sandrine
name: Ployon, Estelle
name: Risch, Anna
name: Sarrazin, Philippe
name: Slama, Rémy
name: Tabaka, Kamila
name: Treibich, Carole
name: Chardonnel, Sonia
name: Chalabaev, Aïna
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy

description: Additional file 1.
GRAVITY on 𝛽 Pic b
Creators: name: Novak, Mathais
name: Parashivamurthy, Harshitha Mysore
name: Bhowmik, Trisha
name: Rajkumar, Anitha Raj
name: Oliveros Gomez, Natalia
name: Medina, Sofia
Publisher: name: Zenodo
Year: 2022
Subjects: exoplanets, GRAVITY, interferometry.

description: This is the final presentation and a summary of the work we did during the VLTI-HOW workshop under Mathais Novak, University of Cambridge. The data from the night of September 21, 2018 of the system beta pic b obtained from the GRAVITY-VLTI instrument in the Paranal observatory was downloaded from the ESO archive and reduced manually along with the ESO pipeline gravity. We further made corrections to the reduced data and used pipelines, Clean Gravity and exoGravity for astrometry study. A spectrum was extracted of the exoplanet, beta pic b which showed the Bracket gamma peak. Later, DIRFT-PHOENIX model was used to fit the spectrum, yielding the estimated median parametric values and demonstrating a good fit. Finally, a calculated mass of 9.2 MJ, and the temperature 1.72e+03 K was obtained.
Black Hole as a Wormhole Factory
Creators: name: Kim, Sung-Won
name: Park, Mu-In
Publisher: name: arXiv
Year: 2015
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: On general grounds, one may argue that a black hole stops radiation at the Planck mass, where the radiated energy is comparable to the black hole's mass. And also, it has been argued that there would be a "wormhole-like" structure, known as "space-time foam", due to large fluctuations below the Planck length. In this paper, as an explicit example, we consider an exact classical solution which represents nicely those two properties in a recently proposed quantum gravity model based on different scaling dimensions between space and time coordinates. The solution, called "Black Wormhole", consists of two different states, depending on its mass M and an IR parameter omega: For the black hole state, a non-traversable wormhole occupies the interior region of the black hole around the singularity at the origin, whereas for the wormhole state, the interior wormhole is exposed to an outside observer as the black hole horizon is disappeared from evaporation. The black hole state becomes thermodynamically stable as it approaches to the merge point where the interior wormhole throat and the black hole horizon merges, and the Hawking temperature vanishes at the exact merge point. This solution suggests the "Generalized Cosmic Censorship" by the existence of a wormhole-like structure which protects the naked singularity even after the black hole evaporation. One could understand the would-be wormholes inside the black hole horizon as the results of microscopic wormholes created by "negative" energy quanta which have entered the black hole horizon in Hawking radiation processes: The quantum black hole could be a wormhole factory. It is found that this speculative picture may be consistent with the recent "ER=EPR" proposal for resolving the recent black hole entanglement debates.
description: Added some more words on (1) the transition between the black hole phase and wormhole phase and (2) the notion of a wormhole "factory" in Fig. 5. Updated references, Accepted in PLB
title: Reproductive biology of Manx Labridae ( Pisces)
Creators: name: Anne Dipper, Frances
Publisher: name: University of Liverpool Repository
Year: 2023

description: An investigation was made into the reproductive biology of Labrus bergy1ta, Labrus ossifagus, Creni1abrus melops, Centrolabrus exoletus and Cteno1abrus rupestris (Pisces:Labridae) to examine the occurrence and control of sex-inversion. L.bergylta and L.ossifagus are protogynous, the former monandric and the latter diandric; a distinct colour change is associated with sex-inversion in L.ossifagus. The other three species are gonochoristic and only C.me1ops exhibits sexual dimorphism which involves body colour and size of urino-genita1 papilla. Analysis of age and growth data showed that L.bergy1ta and L.ossifagus are large, slow-growing species of great longevity (maximum 25 and 17 years respectively). Back-calculations of length for age were made from the opercular bones using a modification of Lee's (1920) formula: Ln - c -- O(L On- c). This showed that there is an increase in growth rate for secondary males following sex-inversion, but primary males follow the female pattern. Sex-inversion occurs between the ages of 5-20 (L.bergy1ta) and 7-13 (L.osSifagus), but only a small pr~portion of the females invert. This can be deduced since the sex ratio of secondary males to females is only 0.11 and 0.31 respectively, and females occur in the oldest age groups. The three smaller - gonochoristic species have life-spans of less than 9 i y~ars and males have a faster growth rate than females after age 2. There is no change in the length-weight relationship (calculated using the formula: Log weight (gm) = Log a + b Log length (mm) ) during the life span of any of the species. Sex-inversion in L.bergylta and L.ossifagus was confirmed by histological examination of the gonads. It occurs by atrophy of the oocytes and the gradual development of spermatogenetic cysts throughout the gonad. All 5 species undergo normal annual cycles of reproduction. In L. ossifagus, primary and secondary testes have different structures. The latter retains the lamellar arrangement of tissue and central lumen of the ovary; has a secondary vas deferens running in the wall of the gonad as a series of lacunae; and frequently has remnant oocytes. All testes of L.bergylta examined, had a secondary structure with the single exception of a very young male(7 years) in which neither a primary nor secondary structure could be confirmed In C.melops a small number of unusual males are present (ca. 11%). These have female secondary sexual characters and mature 2 years early, but are not the product of sex-inversion. Histochemical techniques failed to reveal the sites of steroid production in the gonads. The control of sex-inversion by hormones was investigated by injection of fish with methyl testosterone estradiol benzoate, and progesterone. Gonadal inversion was not achieved by these means, but methyl testosterone caused the breakdown of oocytesin L.bergylta and L.ossifagus; and induced a colour change from the red to the blue phase in L.oosifagus.
Observation of a localized flat-band state in a photonic Lieb lattice
Creators: name: Mukherjee, Sebabrata
name: Spracklen, Alexander
name: Choudhury, Debaditya
name: Goldman, Nathan
name: Öhberg, Patrik
name: Andersson, Erika
name: Thomson, Robert R.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Optics (physics.optics)
subject: Quantum Gases (cond-mat.quant-gas)
subject: FOS: Physical sciences

description: We show experimentally how a non-diffracting state can be excited in a photonic Lieb lattice. This lattice supports three energy bands, including a perfectly flat middle band, which corresponds to an infinite effective mass with zero dispersion. We show that a suitable optical input state can be prepared so as to only excite the flat band. We analyse, both experimentally and theoretically, the evolution of such photonic flat-band states, and show their remarkable robustness, even in the presence of disorder.
description: Accepted for publication in Physical Review Letters
Time-Aware Item Weighting for the Next Basket Recommendations
Creators: name: Romanov, Aleksey
name: Lashinin, Oleg
name: Ananyeva, Marina
name: Kolesnikov, Sergey
Publisher: name: arXiv
Year: 2023
Subjects: subject: Information Retrieval (cs.IR)
subject: FOS: Computer and information sciences

description: In this paper we study the next basket recommendation problem. Recent methods use different approaches to achieve better performance. However, many of them do not use information about the time of prediction and time intervals between baskets. To fill this gap, we propose a novel method, Time-Aware Item-based Weighting (TAIW), which takes timestamps and intervals into account. We provide experiments on three real-world datasets, and TAIW outperforms well-tuned state-of-the-art baselines for next-basket recommendations. In addition, we show the results of an ablation study and a case study of a few items.
Additional file 1 of Drugs utilization profile in England and Wales in the past 15 years: a secular trend analysis
Creators: name: Naser, Abdallah Y.
name: Alwafi, Hassan
name: Al-Daghastani, Tamara
name: Hemmo, Sara Ibrahim
name: Alrawashdeh, Hamzeh Mohammad
name: Jalal, Zahraa
name: Paudyal, Vibhu
name: Alyamani, Nawras
name: Almaghrabi, Murouj
name: Shamieh, Ahmad
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Additional file 1: Table S1. Change in the prescription rate of medications bytherapeutic class. Figure 1S. Prescription rates of all medications inEngland and Wales between 2004 and 2019.
title: Rhodium-catalysed C-H and C-C bond activation towards the formation of medium-sized rings
Creators: name: Crépin, Damien
Publisher: name: University of Liverpool Repository
Year: 2023

description: Rhodium-catalysed hydroacylation is an elegant methodology which affords ketones in an atom-economical fashion. In this manuscript, the rhodium-catalysed intramolecular hydroacylation of aldehyde-tethered alkylidenecyclopropanes, alkylidenecyclobutanes or alkylideneazetidines is described. This rearrangement which includes a first step of carbon-hydrogen bond activation, a hydrometallation step followed by a ring enlargement and a final reductive elimination of the metal catalyst, leads to the formation of cycloheptenones and cyclooctenones in good to excellent yield. In chapter 1, an overview of the literature on rhodium-catalysed hydro acylation is described. In chapter 2, our efforts to optimise the catalytic conditions and build the scope of 7-membered rings are reported while chapter 3 outlines the results of the mechanistic investigations carried out with aldehyde-tethered alkylidenecyclopropanes. The formation of 8-membered rings is described in chapter 4 and chapter 5 is devoted to the study on the regioselectivity of the ring opening of cyclobutane moieties.
Time to First-Line ART Failure and Time to Second-Line ART Switch in the IeDEA Pediatric Cohort
Creators: name: Musick, B.S.
name: Marete, I.
name: Davies, M.-A.
name: Obama, M.-T.
name: Sawry, S.
name: Eboua, F.T.
name: Yiannoutsos, C.T.
name: Van Nguyen, L.
name: Leroy, V.
name: Newman, J.E.
name: Wools-Kaloustian, K.
name: Mofenson, L.M.
name: Ayaya, S.
name: Edmonds, A.
name: Li, S.
name: Yotebieng, M.
name: Sohn, A.H.
Publisher: name: Lippincott Williams and Wilkins
Year: 2018

description: Background: Globally, 49% of the estimated 1.8 million children living with HIV are accessing antiretroviral therapy (ART). There are limited data concerning long-term durability of first-line ART regimens and time to transition to second-line. Methods: Children initiating their first ART regimen between 2 and 14 years of age and enrolled in one of 208 sites in 30 Asia-Pacific and African countries participating in the Pediatric International Epidemiology Databases to Evaluate AIDS consortium were included in this analysis. Outcomes of interest were: first-line ART failure (clinical, immunologic, or virologic), change to second-line, and attrition (death or loss to program). Cumulative incidence was computed for first-line failure and second-line initiation, with attrition as a competing event. Results: In 27,031 children, median age at ART initiation was 6.7 years. Median baseline CD4% for children ≤5 years of age was 13.2% and CD4 count for those >5 years was 258 cells per microliter. Almost all (94.4%) initiated a nonnucleoside reverse transcriptase inhibitor; 5.3% a protease inhibitor, and 0.3% a triple nucleoside reverse transcriptase inhibitor-based regimen. At 1 year, 7.7% had failed and 14.4% had experienced attrition; by 5 years, the cumulative incidence was 25.9% and 29.4%, respectively. At 1 year after ART failure, 13.7% had transitioned to second-line and 11.2% had experienced attrition; by 5 years, the cumulative incidence was 31.6% and 25.9%, respectively. Conclusions: High rates of first-line failure and attrition were identified in children within 5 years after ART initiation. Of children meeting failure criteria, only one-third were transitioned to second-line ART within 5 years.
Precise model of Hawking radiation from the tunnelling mechanism
Creators: name: Corda, Christian
Publisher: name: arXiv
Year: 2014
Subjects: subject: General Physics (physics.gen-ph)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We recently improved the famous result of Parikh and Wilczek, who found a probability of emission of Hawking radiation which is compatible with a non-strictly thermal spectrum, showing that such a probability of emission is really associated to two non-strictly thermal distributions for boson and fermions. Here we finalize the model by finding the correct value of the pre-factor of the Parikh and Wilczek probability of emission. In fact, that expression has the "of order" sign instead of the equality. In general, in this kind of leading order tunnelling calculations, the exponent arises indeed from the classical action and the pre-factor is an order Planck constant correction. But in the case of emissions of Hawking quanta, the variation of the Bekenstein-Hawking entropy is order 1 for an emitted particle having energy of order the Hawking temperature. As a consequence, the exponent in the Parikh and Wilczek probability of emission is order unity and one asks what is the real significance of that scaling if the pre-factor is unknown. Here we solve the problem assuming the unitarity of the black hole (BH) quantum evaporation and considering the natural correspondence between Hawking radiation and quasi-normal modes (QNMs) of excited BHs, in a "Bohr-like model" that we recently discussed in a series of papers. In that papers, QNMs are interpreted as natural BH quantum levels (the "electron states" in the "Bohr-like model"). Here we find the intriguing result that, although in general it is well approximated by 1, the pre-factor of the Parikh and Wilczek probability of emission depends on the BH quantum level n. We also write down an elegant expression of the probability of emission in terms of the BH quantum levels.
description: 13 pages, final version accepted for publication in Classical and Quantum Gravity. The results of arXiv:1304.1899 have been partially reviewed
The Verifast Program Verifier: A Tutorial
Creators: name: Jacobs, Bart
name: Smans, Jan
name: Piessens, Frank
Publisher: name: Zenodo
Year: 2017

description: A tutorial for the VeriFast  program verification tool, written by the VeriFast developers.

Development of this tutorial occurs at https://github.com/verifast/tutorial .
Use of Nonantiretroviral Medications That May Impact Neurocognition: Patterns and Predictors in a Large, Long-Term HIV Cohort Study
Creators: name: Greenblatt, R.M.
name: Vance, D.
name: Weber, K.M.
name: Sheth, A.N.
name: Fischl, M.A.
name: Rubin, L.H.
name: Bacchetti, P.
name: Radtke, K.K.
name: Anastos, K.
name: Karim, R.
name: Crystal, H.
name: Merenstein, D.
name: Edmonds, A.
Publisher: name: Lippincott Williams and Wilkins
Year: 2018

description: Background: Neurocognitive impairment is a frequent and often disabling comorbidity of HIV infection. In addition to antiretroviral therapies, individuals with HIV infection may commonly use nonantiretroviral medications that are known to cause neurocognitive adverse effects (NC-AE). The contribution of NC-AE to neurocognitive impairment is rarely considered in the context of HIV and could explain part of the variability in neurocognitive performance among individuals with HIV. Setting: Women’s Interagency HIV Study, a prospective, multisite, observational study of US women with and without HIV. Methods: After a literature review, 79 medications (excluding statins) with NC-AE were identified and reported by Women’s Interagency HIV Study participants. We examined factors associated with self-reported use of these medications over a 10-year period. Generalized estimating equations for binary outcomes were used to assess sociodemographic, behavioral, and clinical characteristics associated with NC-AE medication use. Results: Three thousand three hundred women (71% with HIV) and data from ~42,000 visits were studied. HIV infection was associated with NC-AE medication use (odds ratio = 1.52; 95% confidence interval: 1.35 to 1.71). After adjustment for HIV infection status, other predictors of NC-AE medication use included having health insurance, elevated depressive symptoms, prior clinical AIDS, noninjection recreational drug use, and an annual household income of <$12,000 (Ps < 0.004). NC-AE medication use was less likely among women who drank 1–7 or 8–12 alcoholic drinks/week (vs. abstaining) (P < 0.04). Conclusions: HIV infection was associated with NC-AE medication use, which may influence determinations of HIV-associated neurocognitive impairment. Providers should consider the impact of NC-AE medications when evaluating patients with HIV and concurrent neurocognitive symptoms.
Sensitivity for 21cm Bispectrum from Epoch of Reionization
Creators: name: Yoshiura, Shintaro
name: Shimabukuro, Hayato
name: Takahashi, Keitaro
name: Momose, Rieko
name: Nakanishi, Hiroyuki
name: Imai, Hiroshi
Publisher: name: arXiv
Year: 2014
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: The 21cm line brightness temperature brings rich information about Epoch of Reionizaton (EoR) and high-$z$ universe (Cosmic Dawn and Dark Age). While the power spectrum is a useful tool to investigate the EoR signal statistically, higher-order statistics such as bispectrum are also valuable because the EoR signal is expected to be highly non-Gaussian. In this paper, we develop a formalism to calculate the bispectrum contributed from the thermal noise taking array configularion of telescopes into account, by extending a formalism for the power spectrum \cite{2006ApJ...653..815M}. We apply our formalism to the ongoing and future telescopes such as expanded Murchison Widefield Array (MWA), LOw Frequency ARray (LOFAR) and Square Kilometre Array (SKA). We find that expanded MWA does not have enough sensitivity to detect the bispectrum signal. On the other hand, LOFAR has better sensitivity and will be able to detect the peaks of the bispectrum as a function of redshift at large scales with comoving wavenumber $k \lesssim 0.03 {\rm Mpc}^{-1}$. The SKA has enough sensitivity to detect the bispectrum for much smaller scales $k \lesssim 0.3 {\rm Mpc}^{-1}$ and redshift $z \lesssim 20$
description: 8 pages,2 figures, submitted to MNRAS
Additional file 1 of Drinking water nitrate and risk of pregnancy loss: a nationwide cohort study
Creators: name: Ebdrup, Ninna Hinchely
name: Schullehner, Jörg
name: Knudsen, Ulla Breth
name: Liew, Zeyan
name: Thomsen, Anne Marie Ladehoff
name: Lyngsø, Julie
name: Bay, Bjørn
name: Arendt, Linn Håkonsen
name: Clemmensen, Pernille Jul
name: Sigsgaard, Torben
name: Hansen, Birgitte
name: Ramlau-Hansen, Cecilia Høst
Publisher: name: figshare
Year: 2022
Subjects: subject: Cell Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Science Policy

description: Additional file 1.
Variational Analysis of Mass Spectra and Decay Constants for Ground State Pseudoscalar and Vector Mesons in Light-Front Quark Model
Creators: name: Choi, Ho-Meoyng
name: Ji, Chueng-Ryong
name: Li, Ziyue
name: Ryu, Hui-Young
Publisher: name: arXiv
Year: 2015
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Using the variational principle, we compute mass spectra and decay constants of ground state pseudoscalar and vector mesons in the light-front quark model (LFQM) with the QCD-motivated effective Hamiltonian including the hyperfine interaction. By smearing out the Dirac delta function in the hyperfine interaction, we avoid the issue of negative infinity in applying the variational principle to the computation of meson mass spectra and provide analytic expressions for the meson mass spectra. Our analysis with the smeared hyperfine interaction indicates that the interaction for the heavy meson sector including the bottom and charm quarks gets more point-like. We also consider the flavor mixing effect in our analysis and determine the mixing angles from the mass spectra of $(ω,ϕ)$ and $(η,η')$. Our variational analysis with the trial wave function including the two lowest order harmonic oscillator basis functions appears to improve the agreement with the data of meson decay constants and the heavy meson mass spectra over the previous computation handling the hyperfine interaction as perturbation.
description: 5 figures. Added the flavor mixing effect in our analysis and determine the mixing angles from the mass spectra of (\omega,\phi) and (\eta,\eta'). Improved the fitting for the hyperfine splitting in heavy mesons. arXiv admin note: text overlap with arXiv:1206.3351
Cumulative burden of depression and all-cause mortality in women living with human immunodeficiency virus
Creators: name: Pence, B.W.
name: Cohen, M.
name: Breger, T.L.
name: Fischl, M.
name: Cocohoba, J.
name: Adedimeji, A.
name: Cook, R.L.
name: Adimora, A.A.
name: Bengtson, A.M.
name: Neigh, G.
name: Edmonds, A.
name: Schwartz, R.M.
name: Kassaye, S.
name: Mills, J.C.
name: Todd, J.V.
name: Kempf, M.-C.
name: Golub, E.
name: Milam, J.
Publisher: name: Oxford University Press
Year: 2018

description: Background Research linking depression to mortality among people living with human immunodeficiency virus (PLWH) has largely focused on binary "always vs never" characterizations of depression. However, depression is chronic and is likely to have cumulative effects on mortality over time. Quantifying depression as a cumulative exposure may provide a better indication of the clinical benefit of enhanced depression treatment protocols delivered in HIV care settings. Methods Women living with HIV (WLWH), naive to antiretroviral therapy, from the Women's Interagency HIV Study were followed from their first visit in or after 1998 for up to 10 semiannual visits (5 years). Depressive symptoms were assessed using the Center for Epidemiologic Studies Depression (CES-D) scale. An area-under-the-curve approach was used to translate CES-D scores into a time-updated measure of cumulative days with depression (CDWD). We estimated the effect of CDWD on all-cause mortality using marginal structural Cox proportional hazards models. Results Overall, 818 women contributed 3292 woman-years over a median of 4.8 years of follow-up, during which the median (interquartile range) CDWD was 366 (97-853). Ninety-four women died during follow-up (2.9 deaths/100 woman-years). A dose-response relationship was observed between CDWD and mortality. Each additional 365 days spent with depression increased mortality risk by 72% (hazard ratio, 1.72; 95% confidence interval, 1.34-2.20). Conclusions In this sample of WLWH, increased CDWD elevated mortality rates in a dose-response fashion. More frequent monitoring and enhanced depression treatment protocols designed to reduce CDWD may interrupt the accumulation of mortality risk among WLWH.
D6.2 Complete dataset of experimental data
Creators: name: FERRIERE, Alain
Publisher: name: Zenodo
Year: 2022

description: This document is the deliverable D6.2 of the project POLYPHEM. It reports on the results of the experimental part of the program of work, in the form of a complete dataset of experimental data. At the end of the period of validity of the Grant Agreement, the experimental part of the program could not be started, because the installation of the plant was not completed. Consequently, no experimental data could be obtained. The experiment of the plant is scheduled to be started from 17 October 2022, when the construction is finished and the TES and ORC are commissioned.
title: Proton induced quasi-free scattering with inverse kinematics
Creators: name: Thomas  Taylor, Jonathan
Publisher: name: University of Liverpool Repository
Year: 2023

description: Quasi-free scattering reactions represent a direct way to learn about the properties of a nucleon inside the atomic nucleus. In such a nuclear reaction, a high energy particle knocks a bound nucleon directly out of a nucleus without any further violent interaction between the nucleus and the incident, or the nucleus and the two outgoing particles. Quasi-free scattering reactions are thus an ideal way to study the single-particle structure of nuclei and also how the nucleon-nucleon interaction is modified inside nuclear matter. With the availability of high-energy radioactive ion beams, it is now possible for the first time, to use quasi-free scattering reactions to study how such properties are modified inside isospin asymmetric nuclei and nuclear matter. In a recent pilot experiment at the GSI laboratory in Germany, proton induced quasi-free scattering was performed using the LAND/jR3B setup in Cave C. This kinematically complete setup is acting as a prototype for the future full R3B (Reactions with Relativistic Radioactive Beams) experiment and is based on an array of Si micro-strip detectors for tracking, and thick NaI scintillators for energy measurements. This allows for the detection of light recoil particles in coincidence with the detection of both charged particles, neutron and '"Y rays such that quasi-free reactions of the type (p,2p),(p,pn) and (p,pα) can be observed. The benchmark experiment was carried out using inverse kinematics with a 12C beam, at 400 A.Me V and since the structure of 12C is well known, and has been investigated with proton as well as electron knockout reactions, comparisons can be made with these measurements. This thesis will report on the results that have been achieved for the population of both bound and unbound states using the proton induced quasi-free reaction: 12C(p,2p)X as well as describing how the experimental setup is to be exten- ded for future experiments with higher energy radioactive ion beams at the FAIR facility
On theoretical uncertainty of color dipole phenomenology in the J/Psi and Upsilon photoproduction in pA and AA collisions at the CERN Large Hadron Collider
Creators: name: Santos, G. Sampaio dos
name: Machado, M. V. T.
Publisher: name: arXiv
Year: 2014
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: Nuclear Experiment (nucl-ex)
subject: FOS: Physical sciences

description: We investigate the theoretical uncertainty on the predictions for the photoproduction of J/psi and Upsilon states in the proton-nucleus and nucleus-nucleus collisions at the LHC within the color dipole formalism. Predictions for the rapidity distributions are presented and the dependence on the meson wavefunction, heavy quark mass as well as the models for the dipole cross section are analyzed. We compare directly the theoretical results to the recent data from ALICE collaboration on J/psi production in pPb collisions at a centre-of-mass energy per nucleon pair of 5.02 TeV and in PbPb collisions at a centre-of-mass energy per nucleon pair of 2.76 TeV. Predictions are also performed for $Υ$ state in PbPb and pPb and pp collisions at the LHC energies, including the coherent and incoherent contributions.
description: 08 pages, 06 figures. Final version to be published in J. Phys. G: Nucl. Part. Phys
Neighborhood Health Care Access and Sexually Transmitted Infections among Women in the Southern United States: A Cross-Sectional Multilevel Analysis
Creators: name: Hickson, D.A.
name: Bolivar, H.
name: Adimora, A.A.
name: Ramirez, C.
name: Wingood, G.M.
name: Haley, D.F.
name: Golub, E.
name: Belenky, N.
name: Edmonds, A.
Publisher: name: Lippincott Williams and Wilkins
Year: 2018

description: Introduction: The United States has experienced an increase in reportable sexually transmitted infections (STIs) while simultaneously experiencing a decline in safety net services for STI testing and treatment. This multilevel study assessed relationships between neighborhood-level access to health care and STIs among a predominantly Human Immunodeficiency Virus (HIV)-seropositive cohort of women living in the south. Methods: This cross-sectional multilevel analysis included baseline data from HIV-seropositive and HIV-seronegative women enrolled in the Women's Interagency HIV Study sites in Alabama, Florida, Georgia, Mississippi, and North Carolina between 2013 and 2015 (N = 666). Administrative data (eg, United States Census) described health care access (eg, percentage of residents with a primary care provider, percentage of residents with health insurance) in the census tracts where women lived. Sexually transmitted infections (chlamydia, gonorrhea, trichomoniasis, or early syphilis) were diagnosed using laboratory testing. Generalized estimating equations were used to determine relationships between tractlevel characteristics and STIs. Analyses were conducted using SAS 9.4. Results: Seventy percent of participants were HIV-seropositive. Eleven percent of participants had an STI. A 4-unit increase in the percentage of residents with a primary care provider was associated with 39% lower STI risk (risk ratio, 0.61, 95%confidence interval, 0.38-0.99). The percentage of tract residents with health insurance was not associated with STIs (risk ratio, 0.98, 95% confidence interval, 0.91-1.05). Relationships did not vary by HIV status. Conclusions: Greater neighborhood health care access was associated with fewer STIs. Research should establish the causality of this relationship and pathways through which neighborhood health care access influences STIs. Structural interventions and programs increasing linkage to care may reduce STIs.
Additional file 1 of “Respecting our patients’ choices”: making the organizational decision to participate in voluntary assisted dying provision: findings from semi-structured interviews with a rural community hospice board of management
Creators: name: Auret, Kirsten
name: Pikora, Terri J.
name: Gersbach, Kate
name: Donovan, Robert J.
Publisher: name: figshare
Year: 2022
Subjects: subject: Information Systems
subject: FOS: Computer and information sciences

description: Additional file 1: Attachment 1. AlbanyCommunity Hospice Voluntary Assisted Dying Position Statement.
Self-Supervised Learning of Gait-Based Biomarkers
Creators: name: Cotton, R. James
name: Peiffer, J. D.
name: Shah, Kunal
name: DeLillo, Allison
name: Cimorelli, Anthony
name: Anarwala, Shawana
name: Abdou, Kayan
name: Karakostas, Tasos
Publisher: name: arXiv
Year: 2023
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: Markerless motion capture (MMC) is revolutionizing gait analysis in clinical settings by making it more accessible, raising the question of how to extract the most clinically meaningful information from gait data. In multiple fields ranging from image processing to natural language processing, self-supervised learning (SSL) from large amounts of unannotated data produces very effective representations for downstream tasks. However, there has only been limited use of SSL to learn effective representations of gait and movement, and it has not been applied to gait analysis with MMC. One SSL objective that has not been applied to gait is contrastive learning, which finds representations that place similar samples closer together in the learned space. If the learned similarity metric captures clinically meaningful differences, this could produce a useful representation for many downstream clinical tasks. Contrastive learning can also be combined with causal masking to predict future timesteps, which is an appealing SSL objective given the dynamical nature of gait. We applied these techniques to gait analyses performed with MMC in a rehabilitation hospital from a diverse clinical population. We find that contrastive learning on unannotated gait data learns a representation that captures clinically meaningful information. We probe this learned representation using the framework of biomarkers and show it holds promise as both a diagnostic and response biomarker, by showing it can accurately classify diagnosis from gait and is responsive to inpatient therapy, respectively. We ultimately hope these learned representations will enable predictive and prognostic gait-based biomarkers that can facilitate precision rehabilitation through greater use of MMC to quantify movement in rehabilitation.
description: Accepted to Ambient Inteligence for Healthcare workshop at MICCAI 2023
Additional file 2 of “Respecting our patients’ choices”: making the organizational decision to participate in voluntary assisted dying provision: findings from semi-structured interviews with a rural community hospice board of management
Creators: name: Auret, Kirsten
name: Pikora, Terri J.
name: Gersbach, Kate
name: Donovan, Robert J.
Publisher: name: figshare
Year: 2022
Subjects: subject: Information Systems
subject: FOS: Computer and information sciences

description: Additional file 2: Attachment 2. Semi-structured Interview Guide for Board Members.
Impact of nanostructure configuration on the photovoltaic performance of quantum dot arrays
Creators: name: Berbezier, Aude
name: Aeberhard, Urs
Publisher: name: arXiv
Year: 2014
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: In this work, a mesoscopic model based on the non-equilibrium Green's function formalism for a tight-binding-like effective Hamiltonian is used to investigate a selectively contacted quantum dot array designed for operation as a single junction quantum dot solar cell. By establishing a direct relation between nanostructure configuration and optoelectronic properties, the investigation reveals the influence of inter-dot and dot-contact coupling strengths on the rates of charge carrier photogeneration, radiative recombination, and extraction at contacts, and consequently on the ultimate performance of photovoltaic devices with finite quantum dot arrays as the active medium. For long carrier lifetimes, the dominant configuration effects originate in the dependence of the joint density of states on the inter-dot coupling in terms of band width and effective band gap. In the low carrier lifetime regime, where recombination competes with carrier extraction, the extraction efficiency shows a critical dependence on the dot-contact coupling.
description: 11 pages, 15 figures; extensively revised and substantially extended version
Associations Between Neighborhood Characteristics, Social Cohesion, and Perceived Sex Partner Risk and Non-Monogamy Among HIV-Seropositive and HIV-Seronegative Women in the Southern U.S
Creators: name: Haardörfer, R.
name: Adimora, A.A.
name: Ludema, C.
name: Hickson, D.M.A.
name: Goswami, N.D.
name: Cooper, H.L.F.
name: Wingood, G.M.
name: Ross, Z.
name: Kramer, M.R.
name: Haley, D.F.
name: Rubtsova, A.
name: Edmonds, A.
name: Bolivar, H.
name: Ramirez, C.
Publisher: name: Springer New York LLC
Year: 2018

description: Neighborhood social and physical factors shape sexual network characteristics in HIV-seronegative adults in the U.S. This multilevel analysis evaluated whether these relationships also exist in a predominantly HIV-seropositive cohort of women. This cross-sectional multilevel analysis included data from 734 women enrolled in the Women’s Interagency HIV Study’s sites in the U.S. South. Census tract-level contextual data captured socioeconomic disadvantage (e.g., tract poverty), number of alcohol outlets, and number of non-profits in the census tracts where women lived; participant-level data, including perceived neighborhood cohesion, were gathered via survey. We used hierarchical generalized linear models to evaluate relationships between tract characteristics and two outcomes: perceived main sex partner risk level (e.g., partner substance use) and perceived main sex partner non-monogamy. We tested whether these relationships varied by women’s HIV status. Greater tract-level socioeconomic disadvantage was associated with greater sex partner risk (OR 1.29, 95% CI 1.06–1.58) among HIV-seropositive women and less partner non-monogamy among HIV-seronegative women (OR 0.69, 95% CI 0.51–0.92). Perceived neighborhood trust and cohesion was associated with lower partner risk (OR 0.83, 95% CI 0.69–1.00) for HIV-seropositive and HIV-seronegative women. The tract-level number of alcohol outlets and non-profits were not associated with partner risk characteristics. Neighborhood characteristics are associated with perceived sex partner risk and non-monogamy among women in the South; these relationships vary by HIV status. Future studies should examine causal relationships and explore the pathways through which neighborhoods influence partner selection and risk characteristics.
Forged in FIRE: cusps, cores, and baryons in low-mass dwarf galaxies
Creators: name: Oñorbe, Jose
name: Boylan-Kolchin, Michael
name: Bullock, James S.
name: Hopkins, Philip F.
name: Kerěs, Dušan
name: Faucher-Giguère, Claude-André
name: Quataert, Eliot
name: Murray, Norman
Publisher: name: arXiv
Year: 2015
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We present ultra-high resolution cosmological hydrodynamic simulations of $M_*\simeq10^{4-6.3}M_{\odot}$ dwarf galaxies that form within $M_{v}=10^{9.5-10}M_{\odot}$ dark matter halos. Our simulations rely on the FIRE implementation of star formation feedback and were run with high enough force and mass resolution to directly resolve stellar and dark matter structure on the ~200 pc scales of interest for classical and ultra-faint dwarfs in the Local Group. The resultant galaxies sit on the $M_*$ vs. $M_{v}$ relation required to match the Local Group stellar mass function. They have bursty star formation histories and also form with half-light radii and metallicities that broadly match those observed for local dwarfs at the same stellar mass. We demonstrate that it is possible to create a large (~1 kpc) dark matter core in a cosmological simulation of an $M_*\simeq10^{6.5}M_{\odot}$ dwarf galaxy that resides within an $M_{v}=10^{10}M_{\odot}$ halo -- precisely the scale of interest for resolving the Too Big to Fail problem. However, these large cores are not ubiquitous and appear to correlate closely with the star formation histories of the dwarfs: dark matter cores are largest in systems that form their stars late ($z\lesssim2$), after the early epoch of cusp building mergers has ended. Our $M_*\simeq10^4M_{\odot}$ dwarf retains a cuspy dark matter halo density profile that matches almost identically that of a dark-matter only run of the same system. Despite forming in a field environment, this very low mass dwarf has observable properties that match closely to those of ultra-faint satellite galaxies of the Milky Way, including a uniformly old stellar population (>10 Gyr). Though ancient, most of the stars in our ultra-faint form after reionization; the UV field acts mainly to suppress fresh gas accretion, not to boil away gas that is already present in the proto-dwarf.
description: 16 pages, 13 figures, accepted in MNRAS
A FCRB e os poetas da literatura de cordel
Creators: name: Figueiredo, Adriana Mesquita
name: Medeiros, Ana Ligia
name: Guia, Marx Paulo Vargas da
name: Lessa, Luziana Jordão
Publisher: name: Zenodo
Year: 2022

description: Apresentação realizada na sessão O meu Póster em 40 segundos da 13ª Conferência Lusófona de Ciência Aberta, formato híbrido, de 10 a 12 de outubro de 2022.
Chorological maps for the main European woody species: supplementary material
Creators: name: Caudullo, Giovanni
name: Welk, Erik
name: San-Miguel-Ayanz, Jesus
Publisher: name: figshare
Year: 2022
Subjects: Ecology not elsewhere classified

description: This document provides additional methodological information, the list of mapped species, and the references used to produce the dataset of chorological maps published with the paper:

Caudullo G., Welk E., San-Miguel-Ayanz J., 2017. Chorological maps for the main European woody species. Data in Brief 12, 662-666. DOI: https://doi.org/10.1016/j.dib.2017.05.007