cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
The rare $\bar{B}^0_{d} \to ϕγ$ decays in Standard Model and as a probe of R-parity violation
Creators: name: Li, Xinqiang
name: Lu, Gongru
name: Wang, Rumin
name: Yang, Y. D.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We present the first study of the rare annihilation decay $\bar{B}^0_d \to ϕγ$ in the Standard Model. Using QCD factorization formalism, we find ${\cal B}(\bar{B}^0_d \toϕγ)=3.6\times 10^{-12}$. The smallness of the decay rate in the Standard Model make the decay a sensitive probe of new physics contributions. As an example, we calculate the effects of R-parity violating couplings. Within the available upper bounds for $|λ^{''}_{i23}λ^{''}_{i12}|$ and $|λ^{'}_{i32}λ^{'*}_{i12}|$, ${\cal B}(\bar{B}^0_d \toϕγ)$ could be enhanced to order of $10^{-9}\sim 10^{-8}$, which might be accessible at LHCB, B-TeV and the planning super high luminosity B factories at KEK and SLAC.
description: References added. RPV Lambda' contributions are included
title: MANAGEMENT OF AN INVASIVE PLANT IN A MEDITERRANEAN PROTECTED AREA: THE EXPERIENCE OF SENECIO DELTOIDEUS IN ITALY
Creators: name: Minuto, Luigi
Publisher: name: Annali di Botanica
Year: 2021
Subjects: ALIEN SPECIES – ECO-FRIENDLY AND COST-EFFECTIVE – MANAGEMENT – NATURAL ENVIRONMENT

description: Biological invasions are one of the most serious threats to global biodiversity and ecosystem integrity. The problem is growing year by year and a large number of protected areas worldwide are today invaded by at least one exotic species. In this study, we tested the eco-friendly and cost-effective weeding control of Senecio deltoideus in a Regional Protected Area in the North Mediterranean region. During a two years experiment, four techniques compatible with the local laws on protected areas (natural-herbicide, flame-weeding, mulching and mowing) were applied five times a season on sixty plots, compared with fifteen untreated controls. All techniques were effective in reducing Senecio covering: after the first year the maximum covering was limited to 37.93% (flame weeding) with a mean value of 10%; after second year the covering was further reduced (17.02% max; 2% mean). Interestingly, during the second year all plots submitted to a one-year treatment showed an enduring control of S. deltoideus covering (40.73% max; 20% mean). Taking into account feasibility and their impact on the environment, the weeding control recommendable for S. deltoideus is mowing. In a long-time management strategy, the selected treatment could be applied every two years with a drastic reduction in costs for the manager of the protected area.
description: Annali di Botanica, VOL 11 (2021)
Gravity waves in parity-violating Copernican Universes
Creators: name: Alexander, Stephon
name: Jenks, Leah
name: Jiroušek, Pavel
name: Magueijo, João
name: Złośnik, Tom
Publisher: name: arXiv
Year: 2020
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: In recent work minimal theories allowing the variation of the cosmological constant by means of a balancing torsion, have been proposed. It was found that such theories contain parity violating homogeneous and isotropic solutions, due to a torsion structure called the Cartan spiral staircase. Their dynamics are controlled by Euler and Pontryagin quasi-topological terms in the action. Here we show that such theories predict a dramatically different picture for gravitational wave fluctuations in the parity violating branch. If the dynamics are ruled solely by the Euler-type term, then linear tensor mode perturbations are entirely undetermined, hinting at a new type of gauge invariance. The Pontryagin term not only permits for phenomenologically sounder background solutions (as found in previous literature), but for realistic propagation of gravitational wave modes. We discuss the observational constraints and predictions of these theories.
MOESM4 of Preoperative systemic immune-inflammation index predicts prognosis of patients with oral squamous cell carcinoma after curative resection
Creators: name: Diao, Pengfei
name: Wu, Yaping
name: Li, Jin
name: Zhang, Wei
name: Huang, Rong
name: Zhou, Chen
name: Wang, Yanling
name: Cheng, Jie
Publisher: name: figshare
Year: 2018
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified

description: Additional file 4: Table S1. Associations between NLR and multiple clinicopathological parameters in OSCC.
Additional file 2: of Prevalence and risk factors for acute kidney injury among trauma patients: a multicenter cohort study
Creators: name: Harrois, Anatole
name: Soyer, Benjamin
name: Gauss, Tobias
name: Hamada, Sophie
name: Raux, Mathieu
name: Duranteau, Jacques
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: General characteristics of patients with missing data. (DOCX 23 kb)
Strotocera chicoi Gerstmeier and Weiss. Gerstmeier and Weiss 2009
Creators: name: John M. Leavengood, Jr.
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cleridae
Strotocera
Strotocera chicoi

description: Strotocera chicoi Gerstmeier and Weiss, 2009
 Discussion of  Strotocera chicoi Gerstmeier and Weiss.  Gerstmeier and Weiss (2009) accidently listed only Kenya (the locality of the paratype) for the distribution of S. chicoi when, in fact, the holotype was collected from Ethiopia. The inclusion of Ethiopia to the distribution of this species should be considered a correction. However, Gerstmeier and Weiss (2009) included all localities accurately in the figured distribution map.
description: Published as part of John M. Leavengood, Jr., 2015, On the distribution of some African species of Diplocladus Fairmaire and Strotocera Schenkling (Coleoptera: Cleridae: Tillinae), pp. 1-3 in Insecta Mundi 2015 (411) on page 2, DOI: 10.5281/zenodo.5181577
Additional file 8 of Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset
Creators: name: Pouya Khankhanian
name: Pierre-Antoine Gourraud
name: Caillier, Stacy J
name: Santaniello, Adam
name: Hauser, Stephen L
name: Baranzini, Sergio E
name: Oksenberg, Jorge R
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 8:Table S6. Imputed classical HLA alleles. Two of the class II genes, DQA1 and DQB1 showed significant dissimilarity between couples. Two-digit allele designations were used. (DOC 30 KB)
title: Assessment of grain yield and quality traits of diverse oat (Avena sativa L.) genotypes
Creators: name: ERBAŞ KÖSE, Özge Doganay
name: MUT, Zeki
name: AKAY, Hasan
Publisher: name: Annali di Botanica
Year: 2020
Subjects: oat; genotype; yield; biplot; quality

description: Oat (Avena sativa L.) is used as an important source of essential nutrients for both humans and animals. There is an increasing demand in the world due to the high nutritional content and adaptability to low fertility conditions. This study was carried out to determine important yield and quality traits in 347 oat lines and 12 oat cultivars selected from a large number of pure line oats between 2012-2013 and 2013-2014. Grain yield, test weigh, groat percentage, along with crude protein, starch, β-glucan, fat, palmitic, stearic, oleic and linolenic acids, ash, potassium, phosphorus, magnesium, acid detergent fiber and neutral detergent fiber contents were determined. Significant differences were found between the genotypes in terms of the studied traits. Principal component analysis indicated that the first six axes accounted for 84% of the variability. The results indicate which genotypes that is hopeful for use in breeding programs.
description: Annali di Botanica, VOL 11 (2021)
Galaxies as Fluctuations in the Ionizing Background Radiation at Low Redshift
Creators: name: Linder, Suzanne M.
name: Gunesch, Roland
name: Davies, Jonathan I.
name: Baes, Maarten
name: Evans, Rhodri
name: Roberts, Sarah
name: Sabatini, Sabina
name: Smith, Rodney
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Some Lyman continuum photons are likely to escape from most galaxies, and these can play an important role in ionizing gas around and between galaxies, including gas that gives rise to Lyman alpha absorption. Thus the gas surrounding galaxies and in the intergalactic medium will be exposed to varying amounts of ionizing radiation depending upon the distances, orientations, and luminosities of any nearby galaxies. The ionizing background can be recalculated at any point within a simulation by adding the flux from the galaxies to a uniform quasar contribution. Normal galaxies are found to almost always make some contribution to the ionizing background radiation at redshift zero, as seen by absorbers and at random points in space. Assuming that about 2 percent of ionizing photons escape from a galaxy like the Milky Way, we find that normal galaxies make a contribution of at least 30 to 40 percent of the assumed quasar background. Lyman alpha absorbers with a wide range of neutral column densities are found to be exposed to a wide range of ionization rates, although the distribution of photoionization rates for absorbers is found to be strongly peaked. On average, less highly ionized absorbers are found to arise farther from luminous galaxies, while local fluctuations in the ionization rate are seen around galaxies having a wide range of properties.
description: 10 pages, 8 figures, references added, clarified explanation of first two equations
The Spectral Energy Distributions of Active Galactic Nuclei
Creators: name: Brown, M. J. I.
name: Duncan, K. J.
name: Landt, H.
name: Kirk, M.
name: Ricci, C.
name: Kamraj, N.
name: Salvato, M.
name: Ananna, T.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We present spectral energy distributions (SEDs) of 41 active galactic nuclei, derived from multiwavelength photometry and archival spectroscopy. All of the SEDs span at least 0.09 to 30 micron, but in some instances wavelength coverage extends into the X-ray, far-infrared and radio. For some AGNs we have fitted the measured far-infrared photometry with greybody models, while radio flux density measurements have been approximated by power-laws or polynomials. We have been able to fill some of the gaps in the spectral coverage using interpolation or extrapolation of simple models. In addition to the 41 individual AGN SEDs, we have produced 72 Seyfert SEDs by mixing SEDs of the central regions of Seyferts with galaxy SEDs. Relative to the literature, our templates have broader wavelength coverage and/or higher spectral resolution. We have tested the utility of our SEDs by using them to generate photometric redshifts for 0 < z < 6.12 AGNs in the Bootes field (selected with X-ray, IR and optical criteria) and, relative to SEDs from the literature, they produce comparable or better photometric redshifts with reduced flux density residuals.
description: Accepted for publication in MNRAS. 19 pages, 14 figures, 4 tables. The AGN spectral energy distributions, photometry and images are available via https://archive.stsci.edu/hlsp/agnsedatlas
MOESM1 of Circulating microRNAs (miR-126, miR-197, and miR-223) are associated with chronic kidney disease among elderly survivors of the Great East Japan Earthquake
Creators: name: Fujii, Ryosuke
name: Yamada, Hiroya
name: Mirai Yamazaki
name: Munetsuna, Eiji
name: Ando, Yoshitaka
name: Ohashi, Koji
name: Ishikawa, Hiroaki
name: Shimoda, Haruki
name: Sakata, Kiyomi
name: Ogawa, Akira
name: Kobayashi, Seiichiro
name: Suzuki, Koji
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Additional file 1: Table S1. Details of the self-administered questionnaire used in this study.
Possibility of an ultra-precise optical clock using the $6 ^1S_0 \to 6 ^3P^o_0$ transition in $^{171, 173}$Yb atoms held in an optical lattice
Creators: name: Porsev, Sergey
name: Derevianko, Andrei
name: Fortson, Norval
Publisher: name: arXiv
Year: 2004
Subjects: subject: Atomic Physics (physics.atom-ph)
subject: FOS: Physical sciences

description: We report calculations designed to assess the ultimate precision of an atomic clock based on the 578 nm $6 ^1S_0 --> 6 ^3P^o_0$ transition in Yb atoms confined in an optical lattice trap. We find that this transition has a natural linewidth less than 10 mHz in the odd Yb isotopes, caused by hyperfine coupling. The shift in this transition due to the trapping light acting through the lowest order AC polarizability is found to become zero at the magic trap wavelength of about 752 nm. The effects of Rayleigh scattering, higher-order polarizabilities, vector polarizability, and hyperfine induced electronic magnetic moments can all be held below a mHz (about a part in 10^{18}), except in the case of the hyperpolarizability larger shifts due to nearly resonant terms cannot be ruled out without an accurate measurement of the magic wavelength.
description: 4 pages, 1 figure
title: Species Importance in Coastal Dune Ecosystems in Northern Turkey
Creators: name: Sürmen, Burak
name: Ulu Ağır, Şenay
name: Kutbay, Hamdi Guray
name: İmamoğlu, Ali
Publisher: name: Annali di Botanica
Year: 2021
Subjects: Central black sea region; Coastal sand dunes; Conservation values; Disturbance factors; Dune zones; Species conservation index

description: Species importance in coastal dune ecosystems in typical dune zones in Black Sea Region on the north of Turkey were studied by using species conservation index (SCI) approach. SCI scores were significantly differed among dune zones. Additionally coastal dune species were compared by using seven different criteria (geographic distribution, life span, growth form, conservation status, commonness, the utilitarian and the ecological importance). All of the studied criteria were found to be significant for studied costal dune species. All of the studied species were moderate to high importance. The highest mean SCI score was found in E zone, while Xanthium strumarium subsp. cavanillesii and Digitaria ischaemum had the lowest SCI scores and both species occurred in A zone. The highest SCI scores were found in Imperata cylindrica, Eleagnus rhamnoides and Jurinea kilea. The highest SCV values were found in embryonic-shifting or primary dune, while the lowest SCV values were found in drift line zone. There were significant differences among coastal dune zones regarding selected criteria.
description: Annali di Botanica, VOL 11 (2021)
A Hot Cusp-Shaped Confined Solar Flare
Creators: name: Hernandez-Perez, Aaron
name: Su, Yang
name: Thalmann, Julia K.
name: Veronig, Astrid M.
name: Dickson, Ewan C.
name: Dissauer, Karin
name: Joshi, Bhuwan
name: Chandra, Ramesh
Publisher: name: arXiv
Year: 2019
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We analyze a confined flare that developed a hot cusp-like structure high in the corona (H ~ 66 Mm). A growing cusp-shaped flare arcade is a typical feature in the standard model of eruptive flares, caused by magnetic reconnection at progressively larger coronal heights. In contrast, we observe a static hot cusp during a confined flare. Despite an initial vertical temperature distribution similar to that in eruptive flares, we observe a distinctly different evolution during the late (decay) phase, in the form of prolonged hot emission. The distinct cusp shape, rooted at locations of non-thermal precursor activity, was likely caused by a magnetic field arcade that kinked near the top. Our observations indicate that the prolonged heating was a result of slow local reconnection and an increased thermal pressure near the kinked apexes due to continuous plasma upflows.
description: 10 pages, 5 figures
title: SPITTING TYPE SEED DISPERSAL BY DOMESTIC GOAT IN THE ZOOCHORIAL PROCESS OF BLACKTHORN PLUM
Creators: name: Şahin, B.
name: Kar, S.
name: Şafak Odabaşı, N.
Publisher: name: Annali di Botanica
Year: 2021
Subjects: Goat, Blackthorn, Prunus spinosa, Germination, Zoochory

description: The blackthorn plum, Prunus spinosa L., has fruits with a stony endocarp. It is known that the germination of the Prunus species is long-lasting and challenging. Endozoochory, which is seed dispersal via ingestion by vertebrate animals, has been reported to break the dormancy in many plant species. In this study, a special zoochorial relationship, which was perceived to occur between domestic goats (Capra hircus) and P. spinosa, was investigated with regard to its various aspects. The pits spat by goats during rumination were examined microscopically and compared to the intact pits. The endocarp of pits from goats was seen to be superfcially eroded, and the lignifed cells were fragmented and broken. The average germination rates were detected in the fve experimental groups for the 2018 and 2019 years, respectively, as it follows: 3.85% and 42.3% in the samples from goats with endocarp; 11.4% and 6.8% from goats without endocarp; 2.3% and 59.2% from the tree with endocarp; 3.9% and 9.6% from the tree without endocarp; and 0.8% and 80.0% in the samples sowed as whole dried fruit. A high germination rate and the shortness of the germination period for the frst year reveal that the goats, as spitting type seed disperser, play an important supportive zoochorial role for the P. spinosa in nature.
description: Annali di Botanica, VOL 11 (2021)
MOESM5 of Enhanced angiogenic function in response to fibroblasts from psoriatic arthritis synovium compared to rheumatoid arthritis
Creators: name: S. Fromm
name: C. Cunningham
name: M. Dunne
name: D. Veale
name: U. Fearon
name: S. Wade
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology

description: Additional file 5 : Table S1. RT-qPCR primer sequences.
Starbursts from strong compression of galactic molecular clouds due to the high pressure of the intracluster medium
Creators: name: Bekki, Kenji
name: Couch, Warrick J.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We demonstrate that the high pressure of the hot intracluster medium (ICM) can trigger the collapse of molecular clouds in a spiral galaxy, leading to a burst of star formation in the clouds. Our hydrodynamical simulations show that the high gaseous (ram pressure and static thermal) pressure of the ICM strongly compresses a self-gravitating gas cloud within a short time scale ($\sim$ $10^{7}$ yr), dramatically increasing the central gas density, and consequently causing efficient star formation within the cloud. The stars developed in the cloud form a compact, gravitationally bound, star cluster. The star formation efficiency within such a cloud is found to depend on the temperature and the density of the ICM and the relative velocity of the galaxy with respect to it. Based on these results, we discuss the origin of starburst/poststarburst populations observed in distant clusters, the enhancement of star formation for galaxies in merging clusters, and the isolated compact HII regions recently discovered in the Virgo cluster.
description: 13 pages and 3 figures (Fig.1 is color), accepted in ApJL
Additional file 1 of Beagle dog 90-day oral toxicity study of a novel coccidiostat – ethanamizuril
Creators: name: Zhang, Keyu
name: Zheng, Haihong
name: Wei, Shuya
name: Wang, Xiaoyang
name: Fei, Chenzhong
name: Wang, Chunmei
name: Liu, Yingchun
name: Zhang, Lifang
name: Xue, Feiqun
name: Tang, Shusheng
Publisher: name: figshare
Year: 2020
Subjects: Medicine
Neuroscience
Pharmacology
Chemical Sciences not elsewhere classified
Biological Sciences not elsewhere classified

description: Additional file 1. The ARRIVE Guidelines Checklist.
Strangeness and Quark Gluon Plasma
Creators: name: Rafelski, J.
name: Letessier, J.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: A brief summary of strangeness mile stones is followed by a chemical non-equilibrium statistical hadronization analysis of strangeness results at SPS and RHIC. Strange particle production in AA interactions at \sqrt{s_{NN}}\ge 8.6 GeV can be understood consistently as originating from the deconfined quark--gluon plasma in a sudden hadronization process. Onset of QGP formation as function of energy is placed in the beam energy interval 10--30A GeV/c. Strangeness anomalies at LHC are described.
description: 30 pages including numerouse figures, tables. Opening Lecture: Strangeness and Quark Gluon Plasma -- what has been learned so far and where do we go at SQM2003, North Carolina, March 2003, submitted to J. Phys. G
Members of Scientific Operations: Sequencing Operations at the Wellcome Sanger Institute
Creators: name: Tree of Life (Wellcome Sanger Institute)
Publisher: name: Zenodo
Year: 2025

description: This document holds a record of the individuals from Scientific Operations: Sequencing Operations at the Wellcome Sanger Institute who should be considered coauthors of publications arising from the work of the Tree of Life project (https://www.sanger.ac.uk/programme/tree-of-life/).
Amphimallon Latreille 1825
Creators: name: Ziani, Stefano
name: Bezděk, Aleš
name: Branco, Tristão
name: Hillert, Oliver
name: Jákl, Stanislav
name: Král, David
name: Mantič, Marion
name: Rössner, Eckehard
name: Sehnal, Richard
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Melolonthidae
Amphimallon

description: Amphimallon ru fi corne  (Fabricius, 1775)
 Material examined. RUSSIA: Kaliningrad Oblast [Region], Königsberg [Kaliningrad] (1 ♂ in SMNG).
 Distribution. France, Northern Italy, Switzerland, Belgium, Netherlands, Germany, Czech Republic, Slovakia, Poland (Stebnicka 1983), Ukraine (Medvedev 1951). The record from Romania (Panin 1955) seems uncertain (see also Horion 1958). New record from the Russian enclave of Kalinigrad.
description: Published as part of Ziani, Stefano, Bezděk, Aleš, Branco, Tristão, Hillert, Oliver, Jákl, Stanislav, Král, David, Mantič, Marion, Rössner, Eckehard & Sehnal, Richard, 2015, New country records of Scarabaeoidea (Coleoptera) from the Palaearctic Region, pp. 1-36 in Insecta Mundi 2015 (409) on page 21, DOI: 10.5281/zenodo.5181742
Conserved laws and dynamical structure of axions coupled to photons
Creators: name: Rodríguez-Tzompantzi, Omar
Publisher: name: arXiv
Year: 2020
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: In this work, we carry out a study of the conserved quantities and dynamical structure of the four-dimensional modified axion electrodynamics theory described by the axion-photon coupling. In the first part of the analysis, we employ the covariant phase space method to construct the conserved currents and to derive the Noether charges associated with the gauge symmetry of the theory. We further derive the improved energy-momentum tensor using the Belinfante-Rosenfeld procedure, which leads us to the expressions for the energy, momentum, and energy flux densities. Thereafter, with the help of Faddeev-Jackiw's Hamiltonian reduction formalism, we obtain the relevant fundamental brackets structure for the dynamic variables and the functional measure for determining the quantum transition amplitude. We also confirm that modified axion electrodynamics has three physical degrees of freedom per space point. Moreover, using this symplectic framework, we yield the gauge transformations and the structure of the constraints directly from the zero-modes of the corresponding presymplectic matrix.
description: typos corrected, published in International Journal of Modern Physics A
Spin Dynamics of a Canted Antiferromagnet in a Magnetic Field
Creators: name: Fishman, R. S.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The spin dynamics of a canted antiferromagnet with a quadratic spin-wave dispersion near $\vq =0$ is shown to possess a unique signature. When the anisotropy gap is negligible, the spin-wave stiffness $\dsw (\vq, B) = (ω_{\vq}-B)/q^2$ depends on whether the limit of zero field or zero wavevector is taken first. Consequently, $\dsw $ is a strong function of magnetic field at a fixed wavevector. Even in the presence of a sizeable anisotropy gap, the field dependence of both $\dsw $ and the gap energy distinguishes a canted antiferromagnet from a phase-separated mixture containing both ferromagnetic and antiferromagnetic regions.
description: 10 pages, 3 figures
Members of Scientific Operations: Sequencing Operations at the Wellcome Sanger Institute
Creators: name: Tree of Life (Wellcome Sanger Institute)
Publisher: name: Zenodo
Year: 2023

description: This document holds a record of the individuals from Scientific Operations: DNA Pipelines at the Wellcome Sanger Institute who should be considered coauthors of publications arising from the work of the Tree of Life project (https://www.sanger.ac.uk/programme/tree-of-life/).
Magnetic helicity in multiply connected domains
Creators: name: MacTaggart, David
name: Valli, Alberto
Publisher: name: arXiv
Year: 2019
Subjects: subject: Plasma Physics (physics.plasm-ph)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: Magnetic helicity is a fundamental quantity of magnetohydrodynamics that carries topological information about the magnetic field. By `topological information', we usually refer to the linkage of magnetic field lines. For domains that are not simply connected, however, helicity also depends on the topology of the domain. In this paper, we expand the standard definition of magnetic helicity in simply connected domains to multiply connected domains in $\mathbb{R}^3$ of arbitrary topology. We also discuss how using the classic Biot-Savart operator simplifies the expression for helicity and how domain topology affects the physical interpretation of helicity.
description: Accepted for Journal of Plasma Physics
title: Barcoding eases the taxonomic identification of alien plants: the case of the genus Physalis (Solanaceae) in the Iberian Peninsula (Spain)
Creators: name: Terrones, Alejandro
name: Moreno, Joaquín
name: Juan, Ana
Publisher: name: Annali di Botanica
Year: 2020
Subjects: Alien species; European flora; floristic records; genetic markers; morphology; Spain; Solanaceae

description: In the present study, two species of the genus Physalis, P. acutifolia and P. angulata, are reported for the first time as casual aliens for Spain and, even for Europe, in the case of P. acutifolia. Their identification was based on a priori DNA barcoding study to reveal their taxonomic identification, which was followed by a posteriori morphological analysis to support the barcoding identification. As many authors have reported, the reduced and even inexistent information from local or regional Floras makes it difficult to distinguish those unreported taxa from distant geographical areas. Therefore, the successfully obtained results would highlight the importance of using an integrative taxonomic approach for further unidentified alien plant species. Detailed descriptions of both species and a dichotomous key of the alien taxa of Physalis are provided to facilitate their morphological identification.
description: Annali di Botanica, VOL 11 (2021)
Bandwidth-limited and noisy pulse sequences for single qubit operations in semiconductor spin qubits
Creators: name: Ferraro, E.
name: De Michielis, M.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Spin qubits are very valuable and scalable candidates in the area of quantum computation and simulation applications. In the last decades, they have been deeply investigated from a theoretical point of view and realized on the scale of few devices in the laboratories. In semiconductors, spin qubits can be built confining the spin of electrons in electrostatically defined quantum dots. Through this approach it is possible to create different implementations: single electron spin qubit, singlet-triplet spin qubit, or a three electrons architecture, e. g. the hybrid qubit. For each qubit type, we study the single qubit rotations along the principal axis of Bloch sphere including the mandatory non-idealities of the control signals that realize the gate operations. The realistic transient of the control signal pulses are obtained by adopting an appropriate low-pass filter function. In addition the effect of disturbances on the input signals is taken into account by using a Gaussian noise model.
description: 11 pages, 9 figures; Accepted for publications in Entropy - Special Issue "Quantum Information Processing"
Members of Scientific Operations: Sequencing Operations at the Wellcome Sanger Institute
Creators: name: Tree of Life (Wellcome Sanger Institute)
Publisher: name: Zenodo
Year: 2024

description: This document holds a record of the individuals from Scientific Operations: Sequencing Operations at the Wellcome Sanger Institute who should be considered coauthors of publications arising from the work of the Tree of Life project (https://www.sanger.ac.uk/programme/tree-of-life/).
Additional file 5: of Prevalence and risk factors for acute kidney injury among trauma patients: a multicenter cohort study
Creators: name: Harrois, Anatole
name: Soyer, Benjamin
name: Gauss, Tobias
name: Hamada, Sophie
name: Raux, Mathieu
name: Duranteau, Jacques
Publisher: name: figshare
Year: 2018
Subjects: Biotechnology
Biological Sciences not elsewhere classified
Mathematical Sciences not elsewhere classified
Developmental Biology
Marine Biology
Science Policy

description: Predictive performances of different models and variables for AKI stage I or F and for AKI of all stages (R, I or F). (DOCX 16 kb)
Phyllognathus excavatus
Creators: name: Ziani, Stefano
name: Bezděk, Aleš
name: Branco, Tristão
name: Hillert, Oliver
name: Jákl, Stanislav
name: Král, David
name: Mantič, Marion
name: Rössner, Eckehard
name: Sehnal, Richard
Publisher: name: Zenodo
Year: 2015
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Dynastidae
Phyllognathus
Phyllognathus excavatus

description: Phyllognathus excavatus (Forster, 1771)
 Material examined. MONTENEGRO: Kotor, Dobrota camping site, 13.-16.vii.1977, D. Král leg., (1 ♀ in DKCP).
 Distribution. Circum-Mediterranean species reaching eastwards to the Arabian Peninsula, Middle Asia and Iran. In the Balkan Peninsula recorded from Albania, Bulgaria, Bosnia and Herzegovina, Croatia, Greece, Macedonia and Turkey (cf. e.g. Baraud 1985, 1992; Endrődi 1985; Mikšić 1956, 1965 and 1970). First record from Montenegro.
description: Published as part of Ziani, Stefano, Bezděk, Aleš, Branco, Tristão, Hillert, Oliver, Jákl, Stanislav, Král, David, Mantič, Marion, Rössner, Eckehard & Sehnal, Richard, 2015, New country records of Scarabaeoidea (Coleoptera) from the Palaearctic Region, pp. 1-36 in Insecta Mundi 2015 (409) on page 22, DOI: 10.5281/zenodo.5181742
title: In vitro screening of Coronopus didymus and Nasturtium officinale for weed and pest control in agro-ecosystems
Creators: name: Khan, Sadiqullah
name: Rana, Tabassum
name: Kalsoom, Saima
name: Shinwari, Muhammad Ibrar
name: Mohibullah, Muhammad
name: Anwar, Tauseef
name: Qureshi, Huma
Publisher: name: Annali di Botanica
Year: 2020
Subjects: crop production; allelopathy in agro-ecosystems; sandwich method and dish pack bioassay; micro-spectrophotometric technique; total phenolic content

description: Allelopathy is a viable alternative in agro-ecosystems for weed and pest control. The present work was aimed at evaluating the herbicide and pesticide ability of Coronopus didymus (L.) Sm. and Nasturtium officinale W.T. Aiton The allelopathic effect of selected weeds was calculated by sandwich method and dish-pack bioassay. Aqueous extracts of both plants were also used to determine the effects on crop growth in seedlings (wheat and maize). Leachates of C. didymus and N. officinale had an inhibitory effect on the growth of lettuce seedlings by 98.8% and 98.5% respectively in dish pack bioassay; lettuce seedling radicle elongation inhibition was 1.9% and 22.1% respectively compared with untreated control. The inhibition effect for wheat and maize was of no importance. Micro-spectrophotometric technique was used for fungicidal assessment. Both plant extracts (3.125 mg/mL) demonstrated substantial pesticide activity against pathogenic strains Pyricularia oryzae Cavara and Fusarium fujikuroi Nirenberg. C. didymus reported maximum total phenolic content (214.6983 μg GAE/g dry sample) and N. officinale (124.181 μg GAE/g dry sample). Identification of new active compounds can aid in weed and pest management.
description: Annali di Botanica, VOL 11 (2021)
Supergravity Minimal Inflation and its Spectral Index Revisited
Creators: name: Izawa, K. -I.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Natural supergravity models of new inflation are reconsidered as minimal inflationary models within slow-roll approximation. Their running spectral index is derived in a revised form with recent observational results and future refinements in mind. This will possibly determine essential model parameters with respect to Planck-suppressed operators.
description: 7 pages, latex
Radiative parton energy loss and baryon stopping in $AA$ collisions
Creators: name: Zakharov, B. G.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Nuclear Theory (nucl-th)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We study the radiative energy loss contribution to proton stopping in $AA$ collisions. The analyses is performed within the light-cone path integral approach to induced gluon emission. We have found that the radiative correction can fill in partly the midrapidity dip in the net proton rapidity distribution in $AA$ collisions at $\sqrt{s}\sim 10$ GeV. We argue that at $\sqrt{s}\sim 10$ GeV the net proton fluctuations at midrapidity may be dominated by the initial fluctuations of the proton flow, which, to a good accuracy, should be binomial.
description: 7 pages, 2 figures
Current constraints on Cosmological Parameters from Microwave Background Anisotropies
Creators: name: Melchiorri, Alessandro
name: Odman, Carolina
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We compare the latest observations of Cosmic Microwave Background (CMB) Anisotropies with the theoretical predictions of the standard scenario of structure formation. Assuming a primordial power spectrum of adiabatic perturbations we found that the total energy density is constrained to be $Ω_{tot}=1.03\pm0.06$ while the energy density in baryon and Cold Dark Matter (CDM) are $Ω_bh^2=0.021\pm0.003$ and $Ω_{cdm}h^2=0.12\pm0.02$, (all at 68% C.L.) respectively. The primordial spectrum is consistent with scale invariance, ($n_s=0.97\pm0.04$) and the age of the universe is $t_0=14.6\pm0.9$ Gyrs. Adding informations from Large Scale Structure and Supernovae, we found a strong evidence for a cosmological constant $Ω_Λ=0.70_{-0.05}^{+0.07}$ and a value of the Hubble parameter $h=0.69\pm0.07$. Restricting this combined analysis to flat universes, we put constraints on possible 'extensions' of the standard scenario. A gravity waves contribution to the quadrupole anisotropy is limited to be $r \le 0.42$ (95% c.l.). A constant equation of state for the dark energy component is bound to be $w_Q \le -0.74$ (95% c.l.). We constrain the effective relativistic degrees of freedom $N_ν\leq 6.2$ and the neutrino chemical potential $-0.01 \leq ξ_e \leq 0.18$ and $|ξ_{μ,τ}|\leq 2.3$ (massless neutrinos).
description: The status of cosmological parameters before WMAP. In press on Phys. Rev. D., Rapid Communication, 6 pages, 5 figures
Searching for non-Gaussianity in the VSA data
Creators: name: Savage, Richard
name: Battye, Richard A.
name: Carreira, Pedro
name: Cleary, Kieran
name: Davies, Rod D.
name: Davis, Richard J.
name: Dickinson, Clive
name: Genova-Santos, Ricardo
name: Grainge, Keith
name: Gutierrez, Carlos M.
name: Hafez, Yaser A.
name: Hobson, Michael P.
name: Jones, Michael E.
name: Kneissl, Rudiger
name: Lancaster, Katy
name: Lasenby, Anthony
name: Leahy, J. P.
name: Maisinger, Klaus
name: Pooley, Guy G.
name: Rajguru, Nutan
name: Rebolo, Rafael
name: Rocha, Graca
name: Rubino-Martin, Jose Alberto
name: Molina, Pedro Sosa
name: Saunders, Richard D. E.
name: Scott, Paul
name: Slosar, Anze
name: Taylor, Angela C.
name: Titterington, David
name: Waldram, Elizabeth
name: Watson, Robert A.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We have tested Very Small Array (VSA) observations of three regions of sky for the presence of non-Gaussianity, using high-order cumulants, Minkowski functionals, a wavelet-based test and a Bayesian joint power spectrum/non-Gaussianity analysis. We find the data from two regions to be consistent with Gaussianity. In the third region, we obtain a 96.7% detection of non-Gaussianity using the wavelet test. We perform simulations to characterise the tests, and conclude that this is consistent with expected residual point source contamination. There is therefore no evidence that this detection is of cosmological origin. Our simulations show that the tests would be sensitive to any residual point sources above the data's source subtraction level of 20 mJy. The tests are also sensitive to cosmic string networks at an rms fluctuation level of $105 μK$ (i.e. equivalent to the best-fit observed value). They are not sensitive to string-induced fluctuations if an equal rms of Gaussian CDM fluctuations is added, thereby reducing the fluctuations due to the strings network to $74 μK$ rms . We especially highlight the usefulness of non-Gaussianity testing in eliminating systematic effects from our data.
description: Minor corrections; accepted for publication to MNRAS
Local Geometry of the Fermi Surface and the Cyclotron Resonance in Metals in a Normal Magnetic Field
Creators: name: Zimbovskaya, Natalya A.
name: Gumbs, Godfrey
Publisher: name: arXiv
Year: 2004
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: In this paper we present a detailed theoretical analysis of the cyclotron resonance in metals in the magnetic field directed along a normal to the surface of a sample. We show that this resonance occurs due to local geometry of the Fermi surface of a metal. When the Fermi surface (FS) includes segments where its curvature turns zero or diverges, this could give rise to resonance features in the frequency/magnetic field dependence of the surface impedance or its derivative with respect to the field. Otherwise the resonance is scarcely detectable unlike the well-known cyclotron resonance in a parallel magnetic field. The proposed theory agrees with experimantal results concerning both convenient and organic metals.
description: 10 pages, 5 figures, text revised. accepted for publication in Phys. Rev. B vol. 71, xxxx (2005)
Antimicrobial Resistant Bacteria Transmission between Humans and Companion Animals: A Protocol for a Scoping Review
Creators: name: Jin, Mu
name: Ahuja, Aditi
name: Green, Brianna A.
name: Osman, Marwan
name: Yang, Yufan
name: Cazer, Casey L.
Publisher: name: Zenodo
Year: 2020
Subjects: antimicrobial resistance
companion animals
scoping review

description: Scoping review protocol, added data extraction instructions.
Revealing universal quantum contextuality through communication games
Creators: name: Pan, A. K.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: A theory is universal contextual if its prediction cannot be reproduced by an ontological model satisfying both preparation and measurement noncontextuality assumptions. In this report, we first generalize the logical proofs of quantum preparation and measurement contextuality for qubit system for any odd number of preparations and measurements. Based on the logical proof, we derive testable universally non-contextual inequalities violated by quantum theory. We then propose a class of two-party communication games and show that the average success probability of winning such games is solely linked to suitable Bell expression whose local bound is greater than universal non-contextual bound. Thus, for a given state, even if quantum theory does not exhibit non-locality, it may still reveal non-classicality by violating the universal non-contextual bound. Further, we consider a different communication game to demonstrate that for a given choices of observables in quantum theory, even if there is no logical proof of preparation and measurement contextuality exist, the universal quantum contextuality can be revealed through that communication game. Such a game thus test a weaker form of universal non-contextuality with minimal assumption.
description: 11 pages
title: Seed Dormancy Breaking and Germination of Pokeweed and Lamb’s Ear
Creators: name: Amini Bengar, J.
name: NikkhahKouchaksaraei, H.
name: Rezvani, M.
Publisher: name: Annali di Botanica
Year: 2021
Subjects: flooding, Lamb’s Ear, Pokeweed, salt and water stresses

description: We investigated seed dormancy breaking techniques as well as seeds germination of Pokeweed (Phytolacca americana L.) and Lamb’s Ear (Stachys byzantina K. Koch) under varying environmental conditions. The treatments were included dormancy breaking methods (Gibberellic acid (GA3,), mechanical scarification and leaching duration), some environmental factors treatments (salt and drought stresses and pH) and planting depth. The greater stimulatory effect on germination was observed at low concentrations of GA3, while the germination of seed of both plant was reduced with high concentrations of GA3. With decreasing of water potential germination significantly reduced. Seed germination was inversely related to salt concentration. But, Lamb’s Ear germinated in solutions with relatively high salinity. The Pokeweed seeds germination was greatly reduced at pH both less and greater than 7. Lamb’s Ear seed germination was completely inhibited at pH lower less than those of 7. The maximum germination percentage of Pokeweed (62%) was occurred at 5 cm of burial depth after 30 days. Germination percentage of Lamb’s Ear increased in comparison to control as leaching duration enhanced. But it was declined in leaching duration for 96 hours. The seedling emergence decreased with increasing of planting depth in both plants.
description: Annali di Botanica, VOL 11 (2021)
Physical region for three-neutrino mixing angles
Creators: name: Latimer, D. C.
name: Ernst, D. J.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We derive a set of symmetry relations for the three-neutrino mixing angles, including the MSW matter effect. Though interesting in their own right, these relations are used to choose the physical region of the mixing angles such that oscillations are parameterized completely and uniquely. We propose that the preferred way of setting the bounds on the mixing angles should be $θ_{12} \in [0,π/2]$, $θ_{13} \in [-π/2,π/2]$, $θ_{23}\in [0,π/2]$, and $δ\in [0,π)$. No CP violation then results simply from setting $δ=0$. In the presence of the MSW effect, this choice of bounds is a new result. Since the size of the asymmetry about $θ_{13} = 0$ is dependent on the details of the data analysis and is a part of the results of the analysis, we argue that the negative values of $θ_{13}$ should not be ignored.
description: 4 pages
MOESM4 of Transcriptional induction of capsidiol synthesis genes by wounding can promote pathogen signal-induced capsidiol synthesis
Creators: name: Kojima, Tomoya
name: Nobuhide Asakura
name: Hasegawa, Shiori
name: Taishi Hirasawa
name: Mizuno, Yuri
name: Daigo Takemoto
name: Katou, Shinpei
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: Science Policy
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 4: Figure S2. Transcript levels of the capsidiol synthesis genes in another line of WIPK/SIPK-suppressed plants. Leaves of the vector control (V1) and WIPK/SIPK-suppressed plants (WS3 and WS5) were wounded, and harvested at the times indicated after wounding. Transcript levels of the genes were quantified by RT-qPCR and normalized to the level of Actin2 as an internal standard. Values are means with standard deviations of three to six biological replicates.
Identifying the Impact of Financialization on Commodity Futures Prices
Creators: name: Yan, Lei
name: Irwin, Scott H.
name: Yan, Lei
name: Irwin, Scott H.
Publisher: name: Unknown
Year: 2016
Subjects: Agricultural marketing

description: Attempts to detect the impact of financialization on commodity futures prices are often subject to the criticism of weak identification. This paper addresses the issue by investigating the rebalancing of the S&P Goldman Sachs Commodity Index. Investment flows caused by the rebalancing are predetermined and not based on information about futures prices, providing a clear identification to study the price impact. Results show that average futures returns are not significantly different from zero during the rebalancing period and there is no or a weak negative causal link between index investment flows and commodity futures returns. This finding is consistent with the hypothesis that uninformed and predictable order flows tend to attract natural counterparties and would not disrupt the market.
Additional file of Transcriptomic analysis of the temporal host response to skin infestation with the ectoparasitic mite Psoroptes ovis
Creators: name: Burgess, Stewart TG
name: Frew, David
name: Nunn, Francesca
name: Watkins, Craig A
name: McNeilly, Tom N
name: Nisbet, Alasdair J
name: Huntley, John F
Publisher: name: figshare
Year: 2021
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file of Transcriptomic analysis of the temporal host response to skin infestation with the ectoparasitic mite Psoroptes ovis