cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
title: CRAFT-OA deliverable D2.3 "Technical gap analysis and high-level community transition plans"
Creators: name: Varachkina, Hanna
name: Umerle, Tomasz
name: Arasteh-Roodsary, Sona Lisa
name: Šterbenc Svetina, Barbara
name: Van Edig, Xenia
name: Fenner, Jorina
name: Meinecke, Isabella
name: Guigonis, Sandra
name: Stone, Graham
name: Souplet, Jean-Christophe
name: Armengou, Clara
Publisher: name: Genève : CERN
Year: 2024
Subjects: subject: 020

description: CRAFT-OA identified key technical gaps faced by institutional publishing service providers (IPSPs) as well as institutional publishing tools and technology providers (IPTPs). They range from insufficient compliance with technical standards to challenges related to publishing software. The data sources used in this document include deliverables, reports, surveys, and interviews from the CRAFT-OA and DIAMAS projects. In order to address the identified gaps, CRAFT-OA will improve key publishing software, provide toolkits, and resources such as training materials based on the upskilling curriculum. Several proposed solutions (key exploitable results) will be sustained after the end of the project. DIAMAS will prepare guidelines, a tool suite, and further training material. The community transition plan offered in this document will help disseminate the proposed solutions, supporting the Diamond OA publishing community.
Additional file 3 of EZH1/2 plays critical roles in oocyte meiosis prophase I in mice
Creators: name: Jiang, Ting
name: Zhang, Chengxiu
name: Cao, Xinjing
name: Tian, Yingpu
name: Cai, Han
name: Kong, Shuangbo
name: Lu, Jinhua
name: Wang, Haibin
name: Lu, Zhongxian
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Supplementary Material 3
title: Kumulative Dissertation Open Access veröffentlichen – Ein Quick-Guide für Promovierende
Creators: name: Becklas, Carolin
Publisher: name: Genève : CERN
Year: 2024
Subjects: subject: Open Access
subject: Open Science
subject: Kumulative Dissertation
subject: Zweitveröffentlichung
subject: Open Research
subject: 020

description: Diese Handreichung dient als Quick-Guide für Promovierende, die ihre kumulative Dissertation Open Access veröffentlichen möchten. Sie erklärt die Unterschiede zwischen einfachen und ausschließlichen Nutzungsrechten und erläutert, welche Konsequenzen und Fragen sich daraus für eine Zweitveröffentlichung von Artikeln im Rahmen einer kumulativen Dissertation ergeben. Ergänzt wird die Handreichung durch eine Checkliste, die Promovierende für ihren Weg hin zur Open-Access-Publikation der kumulativen Dissertation nutzen können.
ALCAPA in Adults. a successful repair with an alternative technique
Creators: name: Mollinedo, Luis Gustavo Vilá
name: Rubio, Roberto Pablo Martínez
name: López, Didier López
name: Uribe, Andrés Jaime
Publisher: name: F1000Research
Year: 2016

description: ALCAPA syndrome, also known as Bland-White-Garland Syndrome, it’s a rare congenital disease that occurs in 1 of 300,000 born babies. It has a 90% mortality within the first year of life if left untreated, mainly due to myocadial ischemia and heart failure. Here by we present a grown adult with this anomaly and mitral valve disfunction, which is successfully surgical corrected with a novel technique for this syndrome.

Coronary (LMA) reimplantation is the best surgical intervention and provides a major free reintervention period, in this particular case, a novel surgical technique is used where the previous described technique of forming a “tube” with a graft, is recreated with autologous MPA tissue. Several advantages arise from this technique:	Allowance of tissue to grow (Prolong patency)	Easily reproducible technique	Dacron graft MPA reconstruction is inconvenient in infants but poses no danger for adults	Anticoagulation not required	Excellent alternative for the surgical correction of ALCAPA syndrome in AdultsTo our knowledge this is the first case where this novel technique is perform. Nonetheless, to be approved, we should wait long term results in order to apply it again, of course if we ever encounter again.
Additional file 1 of Decitabine co-operates with the IL-33/ST2 axis modifying the tumor microenvironment and improving the response to PD-1 blockade in melanoma
Creators: name: Noto, Francesco
name: Mancini, Jacopo
name: Gambardella, Adriana Rosa
name: Curcio, Christina
name: De Ninno, Adele
name: Andreone, Sara
name: Buccione, Carla
name: D’Urso, Maria Teresa
name: Macchia, Daniele
name: Pacca, Anna Maria
name: Spada, Massimo
name: Businaro, Luca
name: Afferni, Claudia
name: Mattei, Fabrizio
name: Schiavoni, Giovanna
Publisher: name: figshare
Year: 2025
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Supplementary Material 1.
title: First public screening of the high resolution version of the GRASS GIS video from 1987
Creators: name: Löwe, Peter
name: Neumann, Jana
name: Plank, Margret
name: Ziedorn, Frauke
name: Inman, Roger
name: Westervelt, James
name: Lozar, Robert
Publisher: name: Genève : CERN
Year: 2014
Subjects: subject: GRASS GIS
subject: William Shatner
subject: Video
subject: 1987
subject: OSGeo
subject: FOSS4G
subject: Portland
subject: 2014
subject: 020

description: Introductionary presentation slides for the first public screening of the high resolution version of the GRASS GIS video from 1987
CULTIVATING THE NEXT GENERATION: INTEGRATING TRADITIONAL VALUES IN INFORMATION LITERACY EDUCATION
Creators: name: Zhang, Wei Hong
Publisher: name: ZAP journals
Year: 2024
Subjects: Information Literacy, Traditional Values, Ideological Education, Ethical Development, Curriculum Construction

description: In the age of rapid information technology advancement, information literacy has emerged as a vital foundational skill in modern society. However, equipping students with merely technical and knowledge-based training falls short of addressing their holistic development, which necessitates the nurturing of correct values and comprehensive qualities. Chinese traditional values, a treasured spiritual heritage, hold profound ideological and political education significance. This paper endeavors to investigate the incorporation of these invaluable traditional values into the framework of information literacy curriculum construction. The aim is to enhance students' ethical and moral development, ultimately contributing to the cultivation of individuals who are not only well-versed in information literacy but also well-rounded, equipped to be builders and successors of socialism with Chinese characteristics, embodying moral, intellectual, physical, aesthetic, and labor-related development
title: Beitritt zum Editorial Board einer Zeitschrift: Ja oder Nein? Kriterien zur Entscheidungsfindung
Creators: name: Becklas, Carolin
Publisher: name: Genève : CERN
Year: 2024
Subjects: subject: Open Access
subject: Editorial Board
subject: 020

description: Vielleicht kennen Sie das: Sie bekommen eine E-Mail-Einladung, einem Editorial Board beizutreten. Natürlich freuen Sie sich über die Anerkennung Ihrer Expertise. Die Arbeit in einem Editorial Board ist wichtig für den fachlichen Austausch, den Sie gern unterstützen möchten. Aber ist diese Zeitschrift die richtige für Sie? In diesem Handout sind einige Fragen aufgelistet, die Ihnen bei der Entscheidung helfen können.
Additional file 2 of Decitabine co-operates with the IL-33/ST2 axis modifying the tumor microenvironment and improving the response to PD-1 blockade in melanoma
Creators: name: Noto, Francesco
name: Mancini, Jacopo
name: Gambardella, Adriana Rosa
name: Curcio, Christina
name: De Ninno, Adele
name: Andreone, Sara
name: Buccione, Carla
name: D’Urso, Maria Teresa
name: Macchia, Daniele
name: Pacca, Anna Maria
name: Spada, Massimo
name: Businaro, Luca
name: Afferni, Claudia
name: Mattei, Fabrizio
name: Schiavoni, Giovanna
Publisher: name: figshare
Year: 2025
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Supplementary Material 2
title: It Takes More Than a Village: A National Network of Bottom up PID Strategies in Germany
Creators: name: Ziedorn, Frauke
name: Genderjahn, Steffi
name: Hagemann-Wilholt, Stephanie
name: Taller, Nelli
Publisher: name: [Prague] : National Library of Technology
Year: 2024
Subjects: subject: persistent identifiers
subject: national strategy
subject: PID Network Germany
subject: PID4NFDI
subject: DOI
subject: ORCID
subject: consortium
subject: Germany
subject: 020
subject: Konferenzschrift

description: There are individual efforts to develop national persistent identifier (PID) strategies involving numerous stakeholders and infrastructures. The planned panel discussion wants to provide insights into the diversity of developments in Germany. We will present the bottom-up strategies for open identification systems from the perspective of the projects PID Network Germany and PID4NFDI as well as the national DOI and ORCID consortia.
title: Barcelona Declaration on Open Research Information: Coordinating Action to Promote a System-wide Transition to Open Research Information
Creators: name: Kramer, Bianca
name: Hauschke, Christian
Publisher: name: [Prague] : National Library of Technology
Year: 2024
Subjects: subject: persistent identifiers
subject: open research
subject: Barcelona Declaration
subject: 020
subject: Konferenzschrift

description: After introducing the Barcelona Declaration on Open Research Information earlier during PIDfest, this unconference session invites interested participants to discuss potential ways research organizations and funders could coordinate action towards open research information. We will be collecting good examples, ideas for actions, and existing barriers.
Association of Alzheimer's genetic risk factors with cognitive decline: the path through life project
Creators: name: Andrews Shea
name: Debjani Das
name: Anstey, Kaarin
name: Easteal, Simon
Publisher: name: F1000Research
Year: 2016

description: Background: Recent genome-wide associations studies have identified novel SNPs, beyond APOE, that increase risk for developing Alzheimer’s disease (AD). Due to the phenotypic similarity between Alzheimer’s disease and cognitive decline, these variants are good candidates for assessing the association of genetic factors with cognitive decline. This study examines the role of AD risk variants, individually and as a composite risk score, in cognitive decline using a comprehensive cognitive assessment.

Conclusions: Three non-APOE AD risk SNPs; ABCA7-rs3764650, CR1-rs3818361 and MS4A4E-rs6109332, and a weighted GRS were associated with cognitive performance in a large cohort of community-dwelling individuals. Identifying associations between individual genetic risk factors or their combined influence as a risk score with cognitive decline may help in screening for people with elevated risk and be useful for developing intervention and treatment strategies.
title: VIVO PIDs
Creators: name: Hauschke, Christian
Publisher: name: [Prague] : National Library of Technology
Year: 2024
Subjects: subject: persistent identifiers
subject: open-source software
subject: VIVO
subject: 020
subject: Konferenzschrift

description: VIVO is a collaborative, open-source software and ontology designed to represent scholarly endeavors. It is sustained by its members and facilitates the recording, editing, searching, browsing, and visualization of academic activities. VIVO actively promotes the exhibition of scholarly achievements, research discoveries, expert identification, network analysis, and the assessment of research impact. Flexibility of the VIVO platform and its underlying ontology allows easy expansion to support various domains of scholarly engagement. There are more than 70 instances of VIVO across the world, including 20 instances in Europe.
title: Bridging the Gap in Research Information with PIDs for Academic Events
Creators: name: Hagemann-Wilholt, Stephanie
name: Kraus, Robin
name: Hauschke, Christian
Publisher: name: [Prague] : National Library of Technology
Year: 2024
Subjects: subject: persistent identifiers
subject: academic events
subject: confIDent
subject: Datacite
subject: DOI
subject: 020
subject: Konferenzschrift

description: In this presentation, the service and several use-cases of PIDs for academic events will be introduced. This includes e.g. usage in current research information systems, and for investigations in the field of science on science: Conferences have a specific role in the scientific system structure, which also reflects the respective social conditions (e.g. on topics such as sustainability, equity of access).,Furthermore an analysis of the Datacite DOIs and the associated metadata will be provided. The overview includes coverage of different properties, eg. spatial and temporal data, contributing organizations, or the distribution of the currently available DOIs on Fields of Science which represent various reuse scenarios for ConfIDent data.
Supplementary document for Local surface tolerance and quality evaluation of optical surfaces - 5989680.pdf
Creators: name: Zhu, Jun
name: Deng, Yuting
name: Tan, Yilin
name: Wu, Xiaofei
Publisher: name: Optica Publishing Group
Year: 2025
Subjects: Uncategorized

description: Supplementary material contains the generation of random figure errors, local tolerance for the refractive surface, and local tolerance of a Cassegrain system with moderate imaging quality
Additional file 1 of Enhancing the diagnostic capacity of [18F]PSMA-1007 PET/MRI in primary prostate cancer staging with artificial intelligence and semi-quantitative DCE: an exploratory study
Creators: name: Glemser, Philip Alexander
name: Freitag, Martin
name: Kovacs, Balint
name: Netzer, Nils
name: Dimitrakopoulou-Strauss, Antonia
name: Haberkorn, Uwe
name: Maier-Hein, Klaus
name: Schwab, Constantin
name: Duensing, Stefan
name: Beuthien-Baumann, Bettina
name: Schlemmer, Heinz-Peter
name: Bonekamp, David
name: Giesel, Frederik
name: Sachpekidis, Christos
Publisher: name: figshare
Year: 2024
Subjects: subject: Artificial Intelligence and Image Processing
subject: FOS: Computer and information sciences

description: Supplementary Material 1
Late onset Alzheimer’s disease risk variants in cognitive decline: the PATH through life study
Creators: name: Andrews, Shea J.
name: Debjani Das
name: Anstey, Kaarin J.
name: Easteal, Simon
Publisher: name: F1000Research
Year: 2016

description: Introduction: Recent genome-wide association studies have identified a number of single nucleotide polymorphisms associated with late-onset Alzheimer’s disease. Here we examine the associations of 24 LOAD risk loci, individually and collectively as a genetic risk score, with cognitive function.

Discussion: Our results suggest that a minority of AD related SNPs may be associated with non-clinical cognitive decline. Further research is required to verify these results and to examine the effect of preclinical AD in genetic association studies of cognitive decline. The identification of LOAD risk loci associated with non-clinical cognitive performance may help in screening for individuals at greater risk of cognitive decline.
title: PIDs and Open Infrastructure: International Collaboration for the Greater Good
Creators: name: Aspler, John
name: Rabun, Sheila
name: Stathis, Kelly
name: Hauschke, Christian
Publisher: name: [Prague] : National Library of Technology
Year: 2024
Subjects: subject: persistent identifiers
subject: open source software platforms
subject: international collaboration
subject: ORCID
subject: DataCite
subject: 020
subject: Konferenzschrift

description: In this session, we will explore examples of widely used, global open source software platforms (OJS/OPS, DSpace Repository, and VIVO), and discuss how international collaborations, as well as the creation of global funding opportunities by ORCID and DataCite, have been integral to the success of the integration of PIDs in these systems. First, we will share our personal experiences bringing together a global network of collaborators who have pushed forward the development of the ORCID API integrations for both OJS/OPS and DSpace. Second, we will explore the collaborative work toward improving documentation and encouraging the use of the DataCite API integration within DSpace. Third, we will hear from the international VIVO community about their plans to make improvements to the ORCID API integration in VIVO.
Additional file 2 of SlideCNA: spatial copy number alteration detection from Slide-seq-like spatial transcriptomics data
Creators: name: Zhang, Diane
name: Segerstolpe, Åsa
name: Slyper, Michal
name: Waldman, Julia
name: Murray, Evan
name: Strasser, Robert
name: Watter, Jan
name: Cohen, Ofir
name: Ashenberg, Orr
name: Abravanel, Daniel
name: Jané-Valbuena, Judit
name: Mages, Simon
name: Lako, Ana
name: Helvie, Karla
name: Rozenblatt-Rosen, Orit
name: Rodig, Scott
name: Chen, Fei
name: Wagle, Nikhil
name: Regev, Aviv
name: Klughammer, Johanna
Publisher: name: figshare
Year: 2025
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2: Review history.
The Australian National University Alzheimer's disease Risk Index (ANU-ADRI) predicts cognitive impairment in a community study of older adults
Creators: name: Andrews, Shea J.
name: Velez, Jorge I.
name: Cherbuin, Nicolas
name: Easteal, Simon
name: Anstey, Kaarin
Publisher: name: F1000Research
Year: 2016

description: INTRODUCTION: The development of late-life cognitive impairment and dementia has serious personal, social and economic implications that will increase with population ageing. Employing successful intervention and treatment strategies that focus on disease prevention is currently the only available approach that can have an impact on the projected rates of dementia. Risk assessment tools for identifying individuals at greater risk of late-life cognitive impairment will be a key component in population-based risk reduction. Here we evaluated the association between the Australian National University Alzheimer's Disease Risk Index (ANU-ADRI), a self-report risk measure assessing future risk of Alzheimer’s disease (AD) composed of eleven risk and four protective factors from the literature, and transitions to Mild Cognitive Impairment (MCI).

DISCUSSION: These results provide supporting evidence that the ANU-ADRI can be used for assessment of MCI risk. It was found that a higher ANU-ADRI score predicts incident MCI and lower scores predict recovery from MCI to normal ageing. These results complement previous reports indicating that the ANU-ADRI is predictive of AD and dementia and provides further support for using the ANU-ADRI for individual patient assessment and for informing intervention and treatment strategies aimed at delaying or preventing dementia.
title: Supporting Diamond Open Access: Research libraries as funders, intermediaries and publishers
Creators: name: Benz, Martina
name: Van Edig, Xenia
name: Schulz, Katharina
name: Finger, Juliane
name: Verbeke, Demmy
Publisher: name: Genève : CERN
Year: 2022
Subjects: subject: 020
subject: Konferenzschrift

description: [no abstract available]
Induced pluripotent stem cells and somatic cardiac regeneration — an exploratory bioinformatic analysis
Creators: name: Chen, Robert
name: Yau-Hua Yu
Publisher: name: F1000Research
Year: 2016

description: Cardiac regeneration may be the future ultimate therapy for terminal heart failure.  Nucleostemin (GNL3) plays a pivotal role in cardiac repair. Induced pluripotent stem (iPS) cells, induced by SOX2-OCT4-NANOG complex, may offer clues form regeneration.  We would like to explore the interactions by bioinformatic approach.  We identified the candidates that interacted with nucleostemin (GNL3), SOX2, OCT4 (POU5F1), and NANOG with NCBI online Entrez Gene and PubMed.  The pathway networks were built with Ingenuity Pathway Analysis (IPA) 7.5 ®.

In GNL3 network, molecules related to cardiovascular system development and function included CDKN2A, TP53 (tumor protein p53), ID3, NPM1, and IL2 (p=8.4e-4 ~ 9.9e-4 by right-tailed Fisher Exact Test).  In canonical pathways, PPP2R5A involved in cardiac beta-adrenergic signaling and Fgf (fibroblast growth factor) involved in human embryonic stem cell pluripotency.  Nucleostemin and iPS networks had two common molecules: Fgf and TP53.  Nucleostemin and iPS have interactions via tumor protein P53 and fibroblast growth factor, which would require future research.
A computed tomography based survey study investigating the agreement of the therapeutic strategy for fragility fractures of the pelvis
Creators: name: Pieroh, Philipp
name: Hohmann, Tim
name: Gras, Florian
name: Märdian, Sven
name: Pflug, Alexander
name: Wittenberg, Silvan
name: Ihle, Christoph
name: Blankenburg, Notker
name: Dallacker-Losensky, Kevin
name: Schröder, Tanja
name: Herath, Steven C.
name: Palm, Hans-Georg
name: Josten, Christoph
name: Stuby, Fabian M.
name: Wagner, Daniel
name: Höch, Andreas
Publisher: name: Universitäts- und Landesbibliothek Sachsen-Anhalt
Year: 2022
Subjects: subject: 615

description: Treatment recommendations for fragility fractures of the pelvis (FFP) have been provided along with the good reliable FFP classification but they are not proven in large studies and recent reports challenge these recommendations. Thus, we aimed to determine the usefulness of the FFP classification determining the treatment strategy and favored procedures in six level 1 trauma centers. Sixty cases of FFP were evaluated by six experienced pelvic surgeons, six inexperienced surgeons in training, and one surgeon trained by the originator of the FFP classification during three repeating sessions using computed tomography scans with multiplanar reconstruction. The intra-rater reliability and inter-rater reliability for therapeutic decisions (non-operative treatment vs. operative treatment) were moderate, with Fleiss kappa coefficients of 0.54 (95% confidence interval [CI] 0.44–0.62) and 0.42 (95% CI 0.34–0.49). We found a therapeutic disagreement predominantly for FFP II related to a preferred operative therapy for FFP II. Operative treated cases were generally treated with an anterior–posterior fixation. Despite the consensus on an anterior–posterior fixation, the chosen procedures are highly variable and most plausible based on the surgeon’s preference.
title: Gemeinschaftliche Open-Access-Finanzierung als Aufgabe für Bibliotheken
Creators: name: Oberländer, Anja
name: Tullney, Marco
Publisher: name: Genève : CERN
Year: 2021
Subjects: subject: Open Access
subject: Konsortien
subject: Fair Open Access
subject: Bibliotheken
subject: Erwerbung
subject: 020

description: Die Beteiligung an gemeinschaftlicher Open-Access-Finanzierung ist ein wichtiger Baustein der Open-Access-Transformation, der Bibliotheken aber trotz vieler positiver Aspekte auch vor Herausforderungen stellt. Im Vortrag werden aktuelle Ansätze vorgestellt, inkl. des kürzlich gestarteten BMBF-Projekts "KOALA - Konsortiale Open-Access-Lösungen aufbauen". Präsentiert im Rahmen der Vortragsreihe "Open Access in der Erwerbung" der Kommission Erwerbung und Bestandsentwicklung des Deutschen Bibliotheksverbands (dbv).
Additional file 2: of Lab Retriever: a software tool for calculating likelihood ratios incorporating a probability of drop-out for forensic DNA profiles
Creators: name: Inman, Keith
name: Rudin, Norah
name: Cheng, Ken
name: Robinson, Chris
name: Kirschner, Adam
name: Inman-Semerau, Luke
name: Lohmueller, Kirk
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 60506 Virology

description: Description of the drop-in model used by Lab Retriever. (PDF 90Â kb)
title: KOALA - Konsortiale Open-Access-Lösungen aufbauen
Creators: name: Tullney, Marco
name: Schulz, Katharina
name: Benz, Martina
name: Oberländer, Anja
Publisher: name: Genève : CERN
Year: 2021
Subjects: subject: Open Access
subject: Finanzierung
subject: Diamond Open Access
subject: Konsortien
subject: Non-APC
subject: 020

description: Im Projekt KOALA (Konsortiale Open-Access-Lösungen aufbauen) werden konsortiale Lösungen zur Finanzierung von Open Access etabliert. Die gemeinschaftliche Finanzierung von Open-Access-Zeitschriften und -Buchreihen durch wissenschaftliche Bibliotheken stellt eine Alternative zum dominanten APC-Modell dar, bei dem Artikel einzeln von Autor*innen oder ihren Institutionen bezahlt werden. Das vom Bundesministerium für Bildung und Forschung (BMBF) geförderte Projekt startete im April 2021 und wird von der Technischen Informationsbibliothek (TIB) gemeinsam mit dem Kommunikations-, Informations-, Medienzentrum (KIM) der Universität Konstanz umgesetzt. Während der zweijährigen Laufzeit soll mindestens ein entsprechendes Konsortium als Finanzierungspartner für Open-Access-Periodika aufgebaut werden. In diesem Rahmen werden weitere Analysen durchgeführt und Umstellungen von Periodika auf Open Access begleitet. Zusätzlich wird ein zentraler Helpdesk für Herausgeber*innen geschaffen, die Unterstützung bei der Open-Access-Umstellung oder bei der Suche nach einer nachhaltigen Finanzierung benötigen. Die durch KOALA geschaffene Infrastruktur ermöglicht eine faire und nachhaltige Finanzierung qualitätsgesicherter Open-Access-Publikationen. Sie trägt dazu bei, finanzielle Hürden für Autor*innen abzubauen und damit die Teilhabe an Open-Access-Publikationen zu erleichtern. Das Poster stellt das Projekt vor und dient dazu, mit Interessierten ins Gespräch zu kommen, indem es auf die verschiedenen Perspektiven der Bezugsgruppen Bibliotheken, Herausgeber*innen und Verlage eingeht.
Additional file 1: of Lab Retriever: a software tool for calculating likelihood ratios incorporating a probability of drop-out for forensic DNA profiles
Creators: name: Inman, Keith
name: Rudin, Norah
name: Cheng, Ken
name: Robinson, Chris
name: Kirschner, Adam
name: Inman-Semerau, Luke
name: Lohmueller, Kirk
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Space Science
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Modification of the Balding algorithm. (PDF 159Â kb)
title: KOALA - Establishing Consortial Open Access Solutions
Creators: name: Tullney, Marco
name: Oberländer, Anja
name: Benz, Martina
name: Dreher, Lena
name: Schulz, Katharina
Publisher: name: Genève : CERN
Year: 2021
Subjects: subject: open access
subject: collective funding
subject: consortia
subject: diamond open access
subject: non-apc
subject: scholar-led
subject: 020
subject: Konferenzschrift

description: In the KOALA (Konsortiale Open-Access-Lösungen aufbauen) project, consortial solutions for financing open access publications are being established. Collaborative funding of open access journals and book series by academic libraries is an alternative to the dominant model, in which articles are paid for individually by authors or their institutions through APC (article processing charges). During the project period from April 2021 to March 2023, the TIB – Leibniz Information Centre for Science and Technology will work with the Communication, Information, Media Centre (KIM) of the University of Konstanz to establish at least one such consortium as a funding partner for open access periodicals. The project is funded by the German Ministry of Education and Research. Within the project framework, further analyses will be carried out and conversions of periodicals to open access will be accompanied. In addition, a central helpdesk for editors who need help with the transition to open access or with finding sustainable funding will be created. The infrastructure created by KOALA enables fair and sustainable financing of quality-assured open access publications. It contributes to removing financial hurdles for authors and thus facilitates participation in open access publications. The conference poster will outline the purpose and central objectives of KOALA, as well as describing the key points for the perspective of libraries, editors and publishers. For our initial exploration of their perspectives, we are seeking active involvement from these stakeholders and will be entering into a dialogue with them. For the poster’s visualisation, we will draw on the image of a koala’s natural habitat: the key points and objectives of the project will be illustrated against the backdrop of a eucalyptus tree.
Additional file 1 of Sport participation levels among New York City’s kids remain low months after the COVID-19 pandemic
Creators: name: Jeong, Yealeen
name: Salunga, Arianne
name: Karamitopoulos, Mara
name: Carter, Cordelia
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Environmental Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Mental Health
subject: Computational Biology

description: Additional file 1.
title: State-of-the-art library publishing
Creators: name: Van Edig, Xenia
name: Withanage, Dulip
Publisher: name: Genève : CERN
Year: 2021
Subjects: subject: Library Publishing
subject: Open Access
subject: OJS
subject: XML
subject: 020
subject: Konferenzschrift

description: TIB Open Publishing – TIB – Leibniz Information Centre for Science and Technology's open-access publishing platform - is a new service. Nevertheless, the first two published conference volumes have been able to benefit from various features of our service: All contributions have been released under CC BY 4.0 and the copyright remains with the authors. The published contributions are archived via the TIB's long-term archiving system. For this purpose, we have developed a plugin that transfers metadata and files from OJS to Rosetta. We deliver the publications to the German National Library and they are referenced in the Verbundkatalog K10plus and can thus be found in the TIB Portal. We are fond of persistent identifiers and use ISSNs (online), Crossref DOIs, ORCIDs, and RORs for the publications. To enable the latter we developed a ROR Plugin for OJS. For some of the contributions, we are already able to provide full-text XML. In doing so, we converted template-compliant Word submissions to JATS XML within OJS. We then post-processed this JATS XML using the Texture Editor in OJS. Online representation of the XML is created using the LensGalleyBits plugin, which generates a dynamic HTML view. The protection of personal data is very important to us. Therefore, we have modified our OJS so that editors from one publication cannot search user data from another publication, even though both publications run on the same OJS instance. In the future we would like to be able to offer full-text XML also for LaTeX submissions and we would like to generate HTML and PDF directly from the XML files. Besides simplifying the workflow we also want to improve the layout of the output formats. Furthermore, we are aiming to improve the presentation and handling of conference publications with OJS and are in an exchange with PKP on this.
title: Einführung ins Forschungsdatenmanagement für Geo-/ Biowissenschaften unter besonderer Berücksichtigung von Geodaten
Creators: name: Jung-Dahlke, Christine
Publisher: name: Genève : CERN
Year: 2024
Subjects: subject: 020

description: Im Rahmen eines vierstündigen Präsenz-Workshops der Landesinitiative Forschungsdatenmanagement Niedersachsen (FDM-NDS) zusammen mit der lokalen FDM-Beratung an der Universität Hildesheim wurde diese Präsentation als „Einführung ins Forschungsdatenmanagement für Geo-/ Biowissenschaften unter besonderer Berücksichtigung räumlicher Daten“ am 16.09.2024 gegeben. Der Fokus lag auf praktischen Aspekten des Forschungsdatenmanagements aus Perspektive von Studierenden, Doktoranden und Postdocs. Ziel war es einige Orientierungspunkte fachspezifisch im „FDM-Dschungel“ zu geben. Die Präsentationsfolien, die hier zur Verfügung stehen, wurden ergänzt durch Live-Demonstrationen und hands-on Übungen zu fachspezifischen Aspekten des FDM mit ArcGIS Software. Dieser Teil des Workshops ist nicht in den Folien enthalten.
Additional file 2 of Lab Retriever: a software tool for calculating likelihood ratios incorporating a probability of drop-out for forensic DNA profiles
Creators: name: Inman, Keith
name: Rudin, Norah
name: Cheng, Ken
name: Robinson, Chris
name: Kirschner, Adam
name: Inman-Semerau, Luke
name: Lohmueller, Kirk E.
Publisher: name: figshare
Year: 2025
Subjects: subject: Statistics
subject: FOS: Mathematics
subject: Computer Software
subject: FOS: Computer and information sciences

description: Description of the drop-in model used by Lab Retriever. (PDF 90 kb)
title: Forschungsberichterstattung: Integration, Standardisierung, Verteilte Systeme
Creators: name: Riechert, Mathias
name: Heller, Lambert
name: Tobias, Regine
name: Biesenbender, Sophie
name: Blümel, Ina
Publisher: name: Genève : CERN
Year: 2015
Subjects: subject: research information systems
subject: research information
subject: research policy
subject: vivo
subject: Current Research Information Systems
subject: cris
subject: Germany
subject: dini
subject: 020
subject: Konferenzschrift

description: Dieses Diskussionspapier gibt einen Überblick über die Entwicklung der Forschungsberichterstattung im Wissenschaftssystem. Dabei werden aktuelle Entwicklungen von integrierten Forschungsinformationssystemen und aktuelle Standardisierungsinitiativen aufgezeigt und ein Einblick in ein Umsetzungsprojekt eines verteilten Systems gegeben. Der Beitrag schließt in mit einer Diskussion von Weiterentwicklungsszenarien verteilter Forschungsinformationssysteme im Wissenschaftssystem.
Additional file 1 of Lab Retriever: a software tool for calculating likelihood ratios incorporating a probability of drop-out for forensic DNA profiles
Creators: name: Inman, Keith
name: Rudin, Norah
name: Cheng, Ken
name: Robinson, Chris
name: Kirschner, Adam
name: Inman-Semerau, Luke
name: Lohmueller, Kirk E.
Publisher: name: figshare
Year: 2025
Subjects: subject: Statistics
subject: FOS: Mathematics
subject: Computer Software
subject: FOS: Computer and information sciences

description: Modification of the Balding algorithm. (PDF 159 kb)
Additional file 1 of NIR-activated electrospun nanodetonator dressing enhances infected diabetic wound healing with combined photothermal and nitric oxide-based gas therapy
Creators: name: Xie, Jiajun
name: Liu, Guihua
name: Chen, Rong
name: Wang, Ding
name: Mai, Huaming
name: Zhong, Qiang
name: Ning, Yanhong
name: Fu, Jinlang
name: Tang, Zinan
name: Xu, Yixin
name: Li, Hao
name: Lei, Mingyuan
name: Cheng, Hao
name: Huang, Yuliang
name: Zhang, Yang
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Additional file 1. Supplementary information of additional methods, results, schematic illustrations, and figures.
Hockey-Stick Polycatenars : network formation and transition from one dimensional to three-dimensional liquid crystalline phases
Creators: name: Alaasar, Mohamed
name: Poppe, Silvio
Publisher: name: Universitäts- und Landesbibliothek Sachsen-Anhalt
Year: 2022
Subjects: subject: 540

description: Photo switchable liquid crystalline (LC) materials are of great interest for optical and photonic applications. Herein we report the design, synthesis, and molecular self-assembly of the first examples of photosensitive hockey-stick (HS) polycatenars. Therefore, two new series of HSLCs derived from 4-cyanoresorcinol bent-core unit connected to a short azobenzene-based side arm with one variable alkoxy chain and a long ester-based wing terminated with two alkoxy chains at 3 and 5 positions of the terminal benzene ring are reported. They differ from each other in the length of the terminal chains connected to the long arm. The LC self-assembly of these HSLCs was investigated by polarized optical microscopy (POM), differential scanning calorimetry (DSC), X-ray diffraction (XRD) and electro optical investigations. Depending on length of terminal chains a transition from one dimensional (1D) tilted and non-tilted smectic phases to three dimensional (3D) achiral bicontinuous cubic phases with Iad symmetry (Cubbi/Iad) upon chain elongation is observed. Moreover, achiral isotropic liquid networks were observed for medium and long chain homologues. Most of mesophases are room temperature LCs phases with wide ranges as observed in the cooling cycles, where once they are formed on heating, no sign of crystallization is detected down to ambient temperature. Finally, UV light irradiation results in fast and reversible photoinduced transformation between different types of LCs phases as well as between LC phase and isotropic liquid.
title: Organizing Scientific Knowledge From Energy System Research Using the Open Research Knowledge Graph
Creators: name: Karras, Oliver
name: Göpfert, Jan
name: Kuckertz, Patrick
name: Pelser, Tristan
name: Auer, Sören
Publisher: name: Genève : CERN
Year: 2024
Subjects: subject: Energy System Research
subject: FAIR
subject: Open Science
subject: Scenario
subject: Scientific Knowledge
subject: Scientific Communication
subject: Infrastructure
subject: Knowledge Graph
subject: Ontology
subject: 020
subject: Konferenzschrift

description: Extended abstract and presentation slides of our contribution to the first NFDI4Energy conference.
title: KOALA: Wie gemeinschaftliche Finanzierung von Diamond Open Access funktionieren kann
Creators: name: Schulz, Katharina
name: Flemming, Danny
Publisher: name: [Reutlingen] : Berufsverband Information Bibliothek
Year: 2023
Subjects: subject: Diamond Open Access
subject: KOALA
subject: Open Access
subject: konsortiale Finanzierung
subject: 020
subject: Konferenzschrift

description: Das vom Bundesministerium für Bildung und Forschung (BMBF) geförderte Projekt KOALA (Konsortiale Open-Access-Lösungen aufbauen) hat 2022 erfolgreich ein Open-Access-Finanzierungsmodell ohne Kosten für Autor*innen entwickelt und zwei Konsortien zur Finanzierung von Zeitschriften und Schriftenreihen aufgebaut. Das Modell knüpft an Erfahrungen aus dem traditionellen Konsortialbetrieb an, der durch neue Aufgaben, Anforderungen an Publikationen, Konsorten und Konsortialführung erweitert wurde. Im Projekt wurden zahlreiche Gespräche mit Redaktionen, Herausgeber*innen, Verlagen und Bibliotheken geführt und dadurch vielfältige Einblicke in die Bedürfnisse auf beiden Seiten gewonnen. Gemeinschaftliche Finanzierung von Open-Access-Publikationen kann gelingen, wenn die Institutionen und Akteure auf beiden Seiten eng kooperieren und sich abstimmen. KOALA nimmt dabei eine Mittler-und Koordinationsrolle zwischen unterschiedlichen Denkweisen, Workflows und Begrifflichkeiten ein. Dies ist entscheidend, um arbeitsfähige Kooperationsstrukturen zu etablieren, gemeinsame Standards festzusetzen und schließlich eine gemeinschaftliche Open-Access-Finanzierung aufzubauen. Die durch KOALA geschaffene Infrastruktur ermöglicht eine faire und nachhaltige Finanzierung qualitätsgesicherter Open-Access-Publikationen. Sie trägt dazu bei, finanzielle Hürden für Autor*innen abzubauen und damit die Teilhabe an Open-Access-Publikationen zu erleichtern. In unserem Vortrag stellen wir die Ergebnisse aus dem Projekt KOALA vor, berichten wir über die Erfahrungen und geben Ausblick auf mögliche Ansätze zur Weiterentwicklung des Modells. KOALA wurde von April 2021 bis Januar 2023 durch die Technische Informationsbibliothek (TIB) und das Kommunikations-, Informations-, Medienzentrum (KIM) der Universität Konstanz durchgeführt. Die aufgebaute Dienstleistung wird an der TIB dauerhaft angeboten.
The Taxonomy of Toxins: A Species-Independent Toxin-Based Framework for Mushroom Safety: Complementing Mycological Practice with Analytical Protocols for Foragers and Culinary Innovators
Creators: name: Rubel, William
Publisher: name: Zenodo
Year: 2025
Subjects: subject: mycology
subject: Food science
subject: Toxicology
subject: Toxicology/history
subject: Toxicology/classification
subject: Mycology
subject: Mycology/education
subject: Mycology/ethics
subject: Mycology/trends
subject: Mycology/classification
subject: Mycology/history

description: This essay proposes replacing today’s opinion-based mushroom edibility assessments with roots in the botany and science of Classical Rome with a science-based system. My proposed taxonomy places authority for determining edibility with an analysis of the toxins found in the mushrooms themselves. It shifts the authority for edibility assessments from opinion, what one or another mycologist personally decided is right, to the authority of replicable science. Edibility is not an opinion. Edibility, meaning that a mushroom is fit for human consumption at the point the cook serves it up, is determined by whether its toxins, if any, can be reduced in concentration to a safe level through a standard kitchen process. Whether this is possible is determined by the nature of its toxins, and how they are governed by general scientific principles, like those of Ficks Laws of Diffusion. This taxonomy takes the guess work out of knowing whether a mushroom is, indeed edible. It opens up hundreds, even thousands of mushroom species to the culinary exploration of foragers worldwide.
Towards defining reasonable minimum composition thresholds : impacts of variable CO2 stream compositions on transport, injection and storage
Creators: name: Rütters, Heike
name: Fischer, Sebastian
name: Hoa, Le Quynh
name: Bettge, Dirk
name: Bäßler, Ralph
name: Maßmann, Jobst
name: Ostertag-Henning, Christian
name: Wolf, J. Lennard
name: Pumpa, Martin
name: Lubenau, Udo
name: Knauer, Sandra
name: Jaeger, Philip
name: Neumann, Andreas
name: Svensson, Kristoff
name: Pöllmann, Herbert
name: Lempp, Christof
name: Menezes, Flora F.
name: Hagemann, Birger
Publisher: name: Universitäts- und Landesbibliothek Sachsen-Anhalt
Year: 2022
Subjects: subject: 551

description: To set up recommendations on how to define “reasonable minimum composition thresholds” for CO2 streams to access CO2 pipeline networks, we investigated potential impacts of CO2 streams with different and temporally variable compositions and mass flow rates along the CCS chain. All investigations were based on a generic “CCS cluster scenario” in which CO2 streams captured from a spatial cluster of eleven emitters (seven fossil-fired power plants, two cement plants, one refinery and one steel mill) are collected in a regional pipeline network. The resulting CO2 stream (19.78 Mio t impure CO2 per year) is transported in a trunk line (onshore and offshore) and injected into five generic replicate storage structures (Buntsandstein saline aquifers) offshore. Experimental investigations and modeling of selected impacts revealed beneficial as well as adverse impacts of different impurities and their combinations. Overall, no fundamental technical obstacles for transporting, injecting and storing CO2 streams of the considered variable compositions and mass flow rates were observed. We recommend to define minimum composition thresholds for each specific CCS project through limiting i) the overall CO2 content, ii) maximum contents of relevant impurities or elements, iii) acceptable variability of concentrations of critical impurities, and defining impurity combinations to be avoided.
title: Bibliothekskonsortien als Bestandteil der Open-Access-Transformation
Creators: name: Schulz, Katharina
name: Pöche, Alexander
Publisher: name: [Reutlingen] : Berufsverband Information Bibliothek
Year: 2022
Subjects: subject: Finanzierung
subject: Koala
subject: Konsortien
subject: Non-APC
subject: Open Access
subject: 020
subject: Konferenzschrift

description: Bibliothekskonsortien erleichtern die gemeinschaftliche Finanzierung von Publikationen durch Bibliotheken. In der Vergangenheit hat sich dieses Modell auf das Subskriptionssystem bezogen: Viele Bibliotheken nehmen gemeinsam an einem Verlagsvertrag teil, das Konsortium dient der einfacheren Abwicklung. Doch das Konsortialmodell kann auch zur Finanzierung von Open-Access-Publikationen genutzt werden. Die gemeinschaftliche Finanzierung durch wissenschaftliche Bibliotheken stellt auch eine Alternative zu rein outputbasierten Modellen dar. Die Anknüpfung an traditionelle Konsortialstrukturen und die Einbeziehung von Institutionen, aus denen heraus vergleichsweise wenig publiziert wird, können die Open-Access-Transformation weiter voranbringen. Im Vortrag werden die Herausforderungen eines solchen Ansatzes sowie mögliche Lösungsansätze dargelegt. In dem vom Bundesministerium für Bildung und Forschung (BMBF) geförderten Projekt KOALA (Konsortiale Open-Access-Lösungen aufbauen), das die Technische Informationsbibliothek (TIB) und das Kommunikations-, Informations-, Medienzentrum (KIM) der Universität Konstanz durchführen, wird ein Finanzierungsmodell entwickelt und mindestens ein Open-Access-Konsortium für Periodika aufgebaut. In diesem Rahmen führen die Projektpartner weitere Analysen durch und begleiten die Umstellung von Periodika auf Open Access. Zusätzlich entsteht ein zentraler Helpdesk für Herausgeber*innen, die Unterstützung bei der Open-Access-Umstellung oder bei der Suche nach einer nachhaltigen Finanzierung benötigen. Die durch KOALA geschaffene Infrastruktur ermöglicht eine faire und nachhaltige Finanzierung qualitätsgesicherter Open-Access-Publikationen. Sie trägt dazu bei, finanzielle Hürden für Autor*innen abzubauen und damit die Teilhabe an Open-Access-Publikationen zu erleichtern. Der Vortrag dient der Diskussion über die Rahmenbedingungen und konkreten Aspekte von Open-Access-Konsortien im Umfeld wissenschaftlicher Bibliotheken.
title: Publishing a Compilation Thesis Open Access – A Quick Guide for Ph.D. Candidates
Creators: name: Becklas, Carolin
Publisher: name: Genève : CERN
Year: 2024
Subjects: subject: open access
subject: self-archiving
subject: green open access
subject: compilation thesis
subject: 020

description: This handout serves as a mini guide for Ph.D. candidates aiming to publish their compilation thesis open access. It lays out the distinctions between exclusive and non-exclusive licences and sheds light on the potential implications and questions associated with republishing articles as part of a compilation thesis. To aid doctoral candidates, the handout includes a helpful checklist for their path to publishing their thesis open access.