cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 3: of A comprehensive mapping of the structure and gene organisation in the sheep MHC class I region
Creators: name: N. Siva Subramaniam
name: EF Morgan
name: JD Wetherall
name: MJ Stear
name: DM Groth
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: List of genes in the MHC Class I region of sheep and cattle reference genome. Description of data: Additional file 3 is a document listing the gene name, symbol and description of genes located in the MHC Class I region in sheep [GenBank: NC_019477.1] and cattle [GenBank: AC_000180.1]. (DOCX 43 kb)
Bonnetellinae
Creators: name: Negm, Mohamed W.
name: Nasser, D.
name: Alatawi, Fahad J.
name: Al Ahmad, Azzam M.
name: Shobrak, Mohammed
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Astigmata
Avenzoariidae

description: Subfamily Bonnetellinae Atyeo & Gaud, 1981
description: Published as part of Negm, Mohamed W., Nasser, D., Alatawi, Fahad J., Al Ahmad, Azzam M. & Shobrak, Mohammed, 2013, Feather mites of the genus Zachvatkinia Dubinin, 1949 (Astigmata: Analgoidea: Avenzoariidae) from Saudi Arabia: A new species and two new records, pp. 61-71 in Zootaxa 3710 (1) on page 63, DOI: 10.11646/zootaxa.3710.1.4, http://zenodo.org/record/284666
Macrocamptoptera setata Triapitsyn 2012
Creators: name: Huber, John T.
name: Read, Jennifer D.
name: Triapitsyn, Serguei V.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mymaridae
Macrocamptoptera
Macrocamptoptera setata

description: Macrocamptoptera setata Triapitsyn, 2012
Macrocamptoptera setata Triapitsyn, 2012a: 104. Holotype ♀ (UCRC). TL: USA, California, San Bernardino Co., Oak Glen. Triapitsyn, 2012a: 97 (key).
Distribution. USA: CA, OR.
description: Published as part of Huber, John T., Read, Jennifer D. & Triapitsyn, Serguei V., 2020, Illustrated key to genera and catalogue of Mymaridae (Hymenoptera) in America north of Mexico, pp. 1-411 in Zootaxa 4773 (3) on page 232, DOI: 10.11646/zootaxa.4773.1.1, http://zenodo.org/record/3821373
Additional file 22: Figure S8. of Genome-wide transcriptome profiling reveals functional networks involving the Plasmodium falciparum drug resistance transporters PfCRT and PfMDR1
Creators: name: Adjalley, Sophie
name: Scanfeld, Daniel
name: Kozlowski, Elyse
name: Llinรกs, Manuel
name: Fidock, David
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Cluster heatmap of gene expression data for pfcrt/pfmdr1 and all other genes. The hierarchical clustering was generated using PCC values calculated using log2-transformed and normalized expression values of 2,600 genes across 110 pairwise comparisons of 11 parasite transcriptome data sets, corresponding to all possible combinations in both directions (i.e. A vs. B and B vs. A). Squares indicate areas containing genes that are all strongly correlated or strongly anti-correlated with the expression of both pfcrt and pfmdr1. (PDF 499 kb)
Zachvatkinia Dubinin 1949
Creators: name: Negm, Mohamed W.
name: Nasser, D.
name: Alatawi, Fahad J.
name: Al Ahmad, Azzam M.
name: Shobrak, Mohammed
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Astigmata
Avenzoariidae
Zachvatkinia

description: Genus Zachvatkinia Dubinin, 1949
description: Published as part of Negm, Mohamed W., Nasser, D., Alatawi, Fahad J., Al Ahmad, Azzam M. & Shobrak, Mohammed, 2013, Feather mites of the genus Zachvatkinia Dubinin, 1949 (Astigmata: Analgoidea: Avenzoariidae) from Saudi Arabia: A new species and two new records, pp. 61-71 in Zootaxa 3710 (1) on page 63, DOI: 10.11646/zootaxa.3710.1.4, http://zenodo.org/record/284666
Additional file 9: of Genome-wide replication landscape of Candida glabrata
Creators: name: StĂŠphane Descorps-DeclĂ¨Re
name: Saguez, Cyril
name: Cournac, Axel
name: Marbouty, Martial
name: Rolland, Thomas
name: Ma, Laurence
name: Bouchier, Christiane
name: Moszer, Ivan
name: Dujon, Bernard
name: Koszul, Romain
name: Guy-Franck Richard
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 60506 Virology

description: Replication timing of histone genes. (DOC 49 kb)
Additional file 1: of A comprehensive mapping of the structure and gene organisation in the sheep MHC class I region
Creators: name: N. Siva Subramaniam
name: EF Morgan
name: JD Wetherall
name: MJ Stear
name: DM Groth
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Pairwise alignment between BAC sequences representing the Chinese Merino map. Description of data: Additional file 1 is a document listing a series of dotplot analyses of the Chinese Merino BAC sequences published in the NCBI database by Gao et al. (2010), along with the interpretation of the analyses. (DOCX 1249 kb)
Additional file 2: of A qualitative analysis of interprofessional healthcare team membersâ   perceptions of patient barriers to healthcare engagement
Creators: name: Powell, Rhea
name: Doty, Amanda
name: Casten, Robin
name: Rovner, Barry
name: Rising, Kristin
Publisher: name: Figshare
Year: 2016
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Understanding What Patient Needs to Stay Healthy: The Perspective of Community and Hospital-based Caregivers. Focus Group Guide for Care Managers and Social Workers (DOCX 29Â kb)
Additional file 2: of A comprehensive mapping of the structure and gene organisation in the sheep MHC class I region
Creators: name: N. Siva Subramaniam
name: EF Morgan
name: JD Wetherall
name: MJ Stear
name: DM Groth
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Detailed Gepard analysis and comparison between Chinese Merino BACs and sheep reference chromosome 20. Description of data: Additional file 2 is a figure illustrating the dotplot analysis between Chinese Merino BAC sequences published by Gao et. al. (2010) and sheep reference chromosome 20 [GenBank: NC_190477 Region: 26884456â  28150000]. (DOCX 654 kb)
Additional file 4: Figure S3 A, B. of Genome-wide studies reveal novel and distinct biological pathways regulated by SIN3 isoforms
Creators: name: Nirmalya Saha
name: Mengying Liu
name: Ambikai Gajan
name: Pile, Lori
Publisher: name: Figshare
Year: 2016
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified

description: Venn diagrams showing comparisons between previously published genome-wide SIN3 binding sites to SIN3 isoforms binding events carried out in the current study. This figure is related to Fig.Â 2 (PDF 590Â kb)
title: Eco-Digital Pedagogies: Why and How Teaching the Green Humanities Can Shape Change
Creators: name: BarbasRhoden, Laura
Publisher: name: Old Dominion University
publisherIdentifier: https://ror.org/04zjtrb98
publisherIdentifierScheme: ROR
Year: 2015

description: [First paragraph] In Now You See It, interdisciplinary scholar and education leader Cathy Davidson points out a stunningly obvious truth about human perception: “Whatever you see means there is something you do not see” (290). Practitioners of the environmental humanities have long taken on tasks of seeing and saying what is not seen, what is not heard, from the vantage point of dominant ideologies, from consumerist economic models to the instrumentalist, anthropocentric rationalities that undergird them. Meantime, over the last few decades, we green humanities scholars have broadened our range of vision: studied more diverse texts, deepened analyses, and engaged one another in lively debate in publications, conferences, and symposia. The field of ecocriticism, which began to be articulated in the academy in the 1970s, has matured, and our teaching of the green humanities has expanded.
Mymar Curtis Keys 1829
Creators: name: Huber, John T.
name: Read, Jennifer D.
name: Triapitsyn, Serguei V.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mymaridae
Mymar

description: MYMAR Curtis, 1829
(Figs 593–622)
Mymar Curtis, 1829: 112. Type species: Mymar pulchellus Curtis, 1829, by designation under the Plenary Powers of the International Commission on Zoological Nomenclature, 1965: 82 (Opinion 729).
Pterolinononyktera Maláč, 1943: 51. Type species: Pterolinononyktera obenbergeri Maláč, 1943, by original designation. Synonymy by Annecke & Doutt, 1961c: 26.
Diagnosis. Body length 560–1075 μm. Face with toruli abutting transverse trabecula (Figs 594, 605); antenna with scape narrower medially than apically and fu 2 longer than following segments combined (Fig. 598); fore wing spatulate, without membrane for basal 0.6 of its length (Figs 593, 601); hind wing filamentous, without membrane and either extremely short (Fig. 593) or longer and with a long apical seta (Fig. 601).
Discussion. Among the nine other Nearctic genera of the Polynema group (Acmopolynema, Caraphractus, Cnecomymar, Eustochus, Kalopolynema, Neomymar, Palaeoneura, Polynema, Stephanodes), Mymar is most similar to Neomymar. Both have the toruli abutting the transverse trabecula, unlike the other genera, which have the toruli well separated from it. The wings are also more similar to each other than to other genera of the group; in both genera the fore wing is narrow for at least half its length before widening suddenly towards the apex.
Nearctic hosts. Unknown. Extralimital hosts are Hemiptera: Cicadellidae and Delphacidae (Triapitsyn & Berezovskiy 2001).
Important references. Triapitsyn & Berezovskiy (2001), Triapitsyn (2018a).
description: Published as part of Huber, John T., Read, Jennifer D. & Triapitsyn, Serguei V., 2020, Illustrated key to genera and catalogue of Mymaridae (Hymenoptera) in America north of Mexico, pp. 1-411 in Zootaxa 4773 (3) on page 232, DOI: 10.11646/zootaxa.4773.1.1, http://zenodo.org/record/3821373
Variables are a Curse in Software Vulnerability Prediction
Creators: name: Groppe, Jinghua
name: Groppe, Sven
name: Möller, Ralf
Publisher: name: arXiv
Year: 2024
Subjects: subject: Software Engineering (cs.SE)
subject: Artificial Intelligence (cs.AI)
subject: Cryptography and Security (cs.CR)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences
subject: I.2.0; D.2.m

description: Deep learning-based approaches for software vulnerability prediction currently mainly rely on the original text of software code as the feature of nodes in the graph of code and thus could learn a representation that is only specific to the code text, rather than the representation that depicts the 'intrinsic' functionality of a program hidden in the text representation. One curse that causes this problem is an infinite number of possibilities to name a variable. In order to lift the curse, in this work we introduce a new type of edge called name dependence, a type of abstract syntax graph based on the name dependence, and an efficient node representation method named 3-property encoding scheme. These techniques will allow us to remove the concrete variable names from code, and facilitate deep learning models to learn the functionality of software hidden in diverse code expressions. The experimental results show that the deep learning models built on these techniques outperform the ones based on existing approaches not only in the prediction of vulnerabilities but also in the memory need. The factor of memory usage reductions of our techniques can be up to the order of 30,000 in comparison to existing approaches.
Additional file 1: of A qualitative analysis of interprofessional healthcare team membersâ   perceptions of patient barriers to healthcare engagement
Creators: name: Powell, Rhea
name: Doty, Amanda
name: Casten, Robin
name: Rovner, Barry
name: Rising, Kristin
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Understanding What Patient Needs to Stay Healthy: The Perspective of Community and Hospital-based Caregivers. Focus Group Guide for Community Health Workers (DOCX 29Â kb)
Morphological control in conjugated polymers : synthesis and applications of polymer microspheres
Creators: name: Kelly, Timothy Lewis
Publisher: name: University of British Columbia
Year: 2010

description: The synthesis, characterization, and application of conjugated polymer colloidal microspheres are reported. Monodisperse mesoporous silica spheres were utilized as hard templates for the preparation of poly(3,4-ethylenedioxythiophene) (PEDOT)–silica composites, which could in turn be etched with hydrofluoric acid to yield monodisperse conjugated polymer microparticles. The synthetic procedure was generalized to include other polymers such as polythiophene and poly(N-methylpyrrole). The colloidal and electronic properties of these composites were subsequently studied, and it was found that a balance between colloidal stability and electrical conductivity could be achieved when the mesopores of the silica template were partially filled with polymer. These insights enabled the successful self-assembly of an opaline film of the PEDOT–silica composite. Bragg diffraction of visible light by the lattice planes of the opal was then demonstrated. The silica host was subsequently explored for its ability to control the phase separation of polymer blends. It was found that depending on the order of polymer addition, phase separation could be suppressed. This resulted in an intimate mixture of the two constituent polymers, and has potential impact in the field of photovoltaics. The colloidal microspheres were also examined for their utility as electrode materials in supercapacitors. The PEDOT microspheres were found to have a mass specific capacitance higher than that of typical electropolymerized PEDOT films, indicating that the morphological control was translated into an improvement in device performance. An ion exchange and in situ polymerization approach was developed in order to incorporate poly(p-phenylenevinylene) into the mesoporous silica template. This yielded a luminescent colloidal material that displayed enhanced optical properties relative to the unencapsulated iii polymer. This is again due to the morphological constraints imposed on the polymer by the mesoporous template; polymer chains are isolated from each other, thus shutting down access to non-radiative decay pathways. Other template approaches were explored as a way of producing conjugated polymer microspheres. Sodium dodecyl sulfate micelles were utilized as soft templates for the synthesis of carbohydrate-functionalized poly(p-phenyleneethynylene) particles. These microparticles were examined for their protein-binding ability, and were found to extract the common lectin concanavalin A from solution.
Determination of temperature dependent rate coefficients of the reaction of hydroxyl radicals with volatile organic compounds using a new OH reactivity instrument
Creators: name: Novelli, Anna
name: Berg, Florian
name: Dubus, René
name: Wahner, Andreas
name: Fuchs, Hendrik
Publisher: name: Forschungzentrum Jülich
Year: 2024

description: EGU General Assembly 2024, Vienna, Austria, 14 Apr 2024 - 19 Apr 2024; doi:10.5194/egusphere-egu24-16085
Additional file 4: of A comprehensive mapping of the structure and gene organisation in the sheep MHC class I region
Creators: name: N. Siva Subramaniam
name: EF Morgan
name: JD Wetherall
name: MJ Stear
name: DM Groth
Publisher: name: Figshare
Year: 2015
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Amino acid sequence alignments of MHC class I genes. Description of data: Additional file 4 shows amino acid sequence alignments of MHC class I genes from selected BAC sequences published by Gao et al., 2010 and the primary sheep reference assembly for chromosome 20 (NC_019477.1) in comparison with six class I reference sequences from the IPD database. (DOCX 491 kb)
Zachvatkinia (Zachvatkinia) sternae Canestrini & Fanzago 1876
Creators: name: Negm, Mohamed W.
name: Nasser, D.
name: Alatawi, Fahad J.
name: Al Ahmad, Azzam M.
name: Shobrak, Mohammed
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Astigmata
Avenzoariidae
Zachvatkinia
Zachvatkinia sternae

description: Zachvatkinia (Zachvatkinia) sternae (Canestrini & Fanzago, 1876)
Dermaleichus sternae Canestrini & Fanzago, 1876: 109.
Specimen examined. One male ex sooty gull, Ichthyaetus hemprichii (Bruch, 1853) (Charadriiformes: Laridae), Umm Al-Malik Island, Red Sea, Tabuk province, Saudi Arabia, 25º13'48''N, 37º8'37''E, 12 November 2011, leg. M. Shobrak.
Remarks. In Saudi Arabia, the sooty gull is considered as a coastal gull found throughout the year in the Red Sea and Arabian Gulf, especially around fishing ports. It is distributed through Bahrain, Djibouti, Egypt, Eritrea, India, Iran, Israel, Jordan, Kenya, Lebanon, Maldives, Mozambique, Oman, Pakistan, Qatar, Saudi Arabia, Somalia, Sri Lanka, Sudan, Tanzania, United Arab Emirates and Yemen (Pons et al. 2005; Cottridge 2006; Porter & Aspinall 2010).
The type specimens of Z. sternae were collected from Chlidonias niger (Linnaeus, 1978) in Italy (Canestrini & Fanzago 1876) and further it was recorded by these authors also from Sterna hirundo Linnaeus, 1758 (Canestrini & Fanzago 1877). We consider the collection of Z. sternae from I. hemprichii to represent a new host record for this species although we collected only one specimen of it. The Saudi male specimen is very similar to the redescription done by Mironov (1989a: 97) who depicted the ventral setae cx3 (= 3b) and c1 (= 3a) at one level. However, 3b are distinctly posterior to the level of 3a in the Saudi specimen. We consider this difference to represent intraspecific variation. This is the first record of this species in Saudi Arabia. Z. sternae occurs in Italy (Canestrini & Fanzago 1876, 1877), Russia (Mironov, 1989a) and Saudi Arabia (present study).
description: Published as part of Negm, Mohamed W., Nasser, D., Alatawi, Fahad J., Al Ahmad, Azzam M. & Shobrak, Mohammed, 2013, Feather mites of the genus Zachvatkinia Dubinin, 1949 (Astigmata: Analgoidea: Avenzoariidae) from Saudi Arabia: A new species and two new records, pp. 61-71 in Zootaxa 3710 (1) on page 70, DOI: 10.11646/zootaxa.3710.1.4, http://zenodo.org/record/284666
Additional file 4: of Genome-wide replication landscape of Candida glabrata
Creators: name: Descorps-Declère, Stéphane
name: Saguez, Cyril
name: Cournac, Axel
name: Marbouty, Martial
name: Rolland, Thomas
name: Ma, Laurence
name: Bouchier, Christiane
name: Moszer, Ivan
name: Dujon, Bernard
name: Koszul, Romain
name: Guy-Franck Richard
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 60506 Virology

description: Additional experiment performed to confirm replication origins. The time course shown in this experiment was performed as described in “Methods” for the first experiment (Additional file 1). Top: FACS analyses and DNA content are shown. Time points T0 to T6 were sequenced on a MiSeq (Illumina) sequencer and 2.3–4.1 millions reads were obtained (175 bp single reads) for each time point. Bottom: Sequence coverage for time points T2, T3, T4, and T6, for each chromosome (smoothing span: 0.05–0.09, depending on chromosome size). Sequence mapping of two time points (T1 and T5) exhibited too many gaps to allow us to calculate non-linear regressions for each of the 12 millions nucleotides of the C. glabrata genome, in order to determine T50 values. However, using T6 and T0 coverage, which correspond respectively to S and G1 phases of the cell cycle, we were able to determine replication peak positions. A comparison of peaks detected in experiment #1 (Fig. 2) and experiment #2 (the present figure) was made in the bottom right table. Out of 83 bona fide origins, 73 were found in experiment #2 (88 %), and 241 replication origins were detected (instead of 253 in experiment #1). The average distance between bona fide replication peaks found in both experiments was 6.9 ± 2.4 kb (95 % confidence interval), consistent with what was deduced from comparisons between ARS positions and replication peaks (Fig. 5a). (PDF 1224 kb)
مسؤلية البنوك عن غسيل الأموال و كيفية مواجهتها
Creators: name: Alshamery, Mohmohed
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 480699
subject: Private law and civil obligations not elsewhere classified

description: يصنف غسيل الأموال ضمن الجرائم التي يعاقب عليها القانون العراقي لما له من تأثيرات سلبية على الاقتصاد الوطني من هنا فقد هدفت هذه الدراسة إلى التعرف على دور البنك المركزي العراقي كونه السلة النقدية العليا المناط لها مهمة مكافحة غسيل الأموال العنصر الأساسي ولتحقيق هذا الهدف فقد تم استخدام الأسلوب الوصفي التحليلي ، فقد توصلت الدراسة إلى أن جريمة غسيل الأموال متأصلة في الاقتصاد العراقي منذ القدم ، وقد ساهم البنك المركزي العراقي في تقويضها بعد أن أصدر قانون رقم (39) لسنة 2015 الخاص بمكافحة غسيل الموال وتمويل الارهاب وانطلاقا من دوره في منع الآثار السلبية لتلك الظاهرة المتمثلة بتشوه في نمط الإتفاق والاستهلاك ، فضلا عن زيادة العجز في ميزان المدفوعات وحدوث أزمة سيولة في النقد الأجنبي بالإضافة إلى انهيار البورصات، وأوصت الدراسة بضرورة زيادة التعاون الدولي والمساعدة القانونية في التحقيقات والملاحقات القانونية المتعلقة بغسيل الأموال وتسليم وملاحقة المطلوبين في قضايا غسيل الأموال عن طريق الشرطة الجنائية الدولية (الانتربول ) وكذلك عند الاتفاقيات الأمنية مع الدول وخاصة الاقليمية ودول المنطقة و كذلك ضرورة اعتماد سياسة التقارير الدورية حول النشاط المصرفي وتحليل مخرجاتها والتحرك الفوري اذا ما تبين وجود فعل غير مشروع واحالتها إلى الجهات المختصة بالرقابية.
Synthesis and enzymatic evaluation of activated fluorosugars as inactivators of lysosomal enzymes
Creators: name: Rempel, Brian Patrick
Publisher: name: University of British Columbia
Year: 2011

description: Activated fluorosugars are covalent inactivators for a number of glycosidases, functioning through accumulation of stable glycosyl-enzyme intermediates. Two approaches were taken in designing new inactivators: more highly fluorinated sugars that could form more stable intermediates, and fluorosugars bearing novel aglycones that could be manipulated to improve selectivity and efficiency. Six novel difluorosugar fluorides were synthesized and evaluated as covalent inactivators. Four of the compounds were tested as time-dependent inactivators of the β-glucosidase from Agrobacterium sp. (Abg) and, while they were shown to behave as reversible competitive inhibitors, the only time-dependent inactivation was traced to the presence of an extremely small amount (<0.1%) of a contaminating impurity. The other two compounds were evaluated as inactivators of human lysosomal α-iduronidase (Idua) the enzyme deficient in Mucopolysaccharidosis I. No time-dependent inactivation was observed, and only one functioned as a reversible competitive inhibitor for Idua. Ten novel fluorosugars bearing dialkyl phosphate, phosphonate or phosphinate aglycones were also synthesized and evaluated as covalent inactivators for appropriate model retaining α- and β-glycosidases, but as expected only inactivated retaining β-glycosidases. Some of these compounds were also tested as inactivators of human glucocerebrosidase (GCase), the enzyme that is deficient in Gauchers disease. Activated fluorosugars bearing phosphorus-based aglycones were found to be efficient inactivators of GCase with the best compound, dioctyl (2-deoxy-2-fluoro-β-D-glucopyranosyl)phosphate, being ~4300-fold more efficient as an inactivator of GCase than the previously most efficient inactivator, 2-deoxy-2-fluoro-β-D-glucopyranosyl fluoride. Two compounds, 2-deoxy-2-fluoro-β-D-glucopyranosyl fluoride and benzyl benzyl-(2-deoxy-2-fluoro-β-D-glucopyranosyl)phosphonate, were evaluated as potential pharmacological chaperones for GCase. Both compounds raised the melting temperature of the enzyme in vitro, and cell-based assays showed an increase of GCase levels in the presence of both compounds, although no increase in enzyme activity was observed. Finally, a radiosynthetic route was developed starting from 2-deoxy-2-[¹⁸F]-fluoro-D-glucose to produce 2,4-dinitrophenyl 2-deoxy-2-[¹⁸F]-β-D-fluoroglucopyranoside, which behaved as an active-site directed inactivator of both Abg and GCase in vitro. The radiolabelled complex formed with GCase was purified, injected into mice, and imaged using positron emission tomography (PET). This represents a potentially useful technology for non-invasive studies on enzyme replacement therapy (ERT), which is used clinically to treat Gauchers disease.
Mymar taprobanicum Ward 1875
Creators: name: Huber, John T.
name: Read, Jennifer D.
name: Triapitsyn, Serguei V.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mymaridae
Mymar
Mymar taprobanicum

description: Mymar taprobanicum Ward, 1875
Mymar taprobanicus Ward, 1875: 197. Lectotype (NHMUK?), lost. TL: Sri Lanka, locality not specified [but sent to England from Colombo]. Westwood, 1879: 585 (description) [P].
Mymarilla taprobanicus: Mani, 1938: 143 (catalogue, distribution) [O].
Mymar taprobanicum: Annecke, 1961a: 544 (key), 547 (description) [AT]; Viggiani, 1966: 114 (description, distribution), 116 (key) [P]; Viggiani, 1967b: 160 (distribution) [P]; Subba Rao, 1976: 89 (distribution) [O]; Hayat, 1977: 283 (distribution) [O]; Chiu, 1979: 336 (biological control) [O]; Hirashima et al., 1979: 7 (distribution) [O]; Subba Rao & Hayat, 1983: 137 (catalogue) [O]; Khan & Saxena, 1985: 119 (list) [O]; Viggiani & Jesu, 1988: 1023 (distribution) [P]; Yoshimoto, 1990: 60 (list); Hayat, 1992, 87 (distribution, hosts) [O]; Benrey & Lamp, 1993: 523 (biological control) [O]; Cohen et al., 1994: 752 (effect of insecticides) [O]; Pagliano & Navone, 1995: 36 (list) [P]; Pintureau et al., 1996: 114 (morphometrics, distribution) [P]; Triapitsyn & Berezovskiy, 2001: 6, 7 (key), 11 (distribution); Baquero & Jordana, 2002: 81 (distribution) [P]; Eldredge & Evenhuis, 2002: 74 (distribution) [A]; Pintureau et al., 2003: 167 (list, distribution) [P]; Gupta & Poorani, 2008: 411 (distribution) [O]; Hayat et al., 2008: 328 (distribution) [O]; Huber et al., 2009: 271 (list) [P]; Pricop, 2009b: 126 (distribution) [P]; Aguiar et al., 2010: 246 (list) [P]; Manickavasagam et al., 2011: 395 (key), 397 (distribution) [O]; Rameshkumar et al., 2011: 281 (distribution) [O]; Pintureau, 2012: 28 (list) [P]; Anis & Rehmat, 2013: 6 (list, distribution) [O]; Bayegan et al., 2014: 655 (distribution) [P]; Lotfalizadeh, 2015: 75 (distribution) [P]; Rameshkumar et al., 2015b: 52 (distribution) [O]; Triapitsyn, 2015c: 10 (distribution); Koponen & Triapitsyn, 2016: 3 (distribution) [P]; Lotfalizadeh et al., 2016: 105 (distribution, hosts) [P]; Joshi et al., 2017: 1811 (distribution) [O]; Rameshkumar et al., 2017: 230 (list) [O]; Triapitsyn, 2018a: 150 (key), 153 (distribution) [O]; Triapitsyn, 2018c: 7 (host) [O].
Mymar antillanum Dozier, 1937: 130. Holotype ♀ (USNM). TL: Puerto Rico, near Boquerón. Synonymy by Annecke, 1961a: 547.
Mymar indica Mani, 1942: 160. Holotype ♂ (INPC). TL: India, Delhi. Synonymy by Hayat, 1977: 283.
Mymar tyndalli Girault 1912 [120]: 168. Holotype ♀ (QM). TL: Australia, Queensland, Nelson. Synonymy by Annecke, 1961a: 547.
Oglobliniella aegyptiaca Soyka, 1950b: 131. Holotype ♀ (PPDD), lost. TL: Egypt, Giza. Synonymy by Annecke, 1961a: 547.
Distribution. USA: FL, GA, MD, MO, NC, SC, VA.
description: Published as part of Huber, John T., Read, Jennifer D. & Triapitsyn, Serguei V., 2020, Illustrated key to genera and catalogue of Mymaridae (Hymenoptera) in America north of Mexico, pp. 1-411 in Zootaxa 4773 (3) on page 234, DOI: 10.11646/zootaxa.4773.1.1, http://zenodo.org/record/3821373
Code generated to analyze the dynamics of Orsay virus accumulation and the C. elegans responses within the course of an infection
Creators: name: Elena, Santiago
name: Olmo-Uceda, María José
Publisher: name: Zenodo
Year: 2024
Subjects: subject: Virology
subject: Evolutionary biology
subject: host-parasite
subject: systems biology

description: A) PREPROCESS AND ALIGN READS (preDEA)

Preprocess fastq files with bbduk.sh: preprocessOrV.sh

Align and quantify gene expression with STAR: alignN2.sh

B) Differential Expression Analysis and related

Create count matrix from individual STAR count files: prepareCountMatrix.R

DEA: DEA.R

Correlated/anticorrelated genes: correlationLog2FCwVirus.R

Comparison analysis: comparisonAnalysis.R

C) VISUALIZATION: code to create the plots

Main figures: fig1.R, fig2.R, fig3.R, fig4.R, fig5.R and fig6.R
MOESM3 of The kdr-bearing haplotype and susceptibility to Plasmodium falciparum in Anopheles gambiae: genetic correlation and functional testing
Creators: name: Mitri, Christian
name: Kyriacos Markianos
name: Wamdaogo Guelbeogo
name: Bischoff, Emmanuel
name: Gneme, Awa
name: Eiglmeier, Karin
name: Holm, Inge
name: NâFale Sagnon
name: Vernick, Kenneth
name: Riehle, Michelle
Publisher: name: Figshare
Year: 2015
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 3: Table S2. Annotated coding sequences within the haplotype carrying the Pfin 6 locus and para gene.
Mymar venustum Girault 1911
Creators: name: Huber, John T.
name: Read, Jennifer D.
name: Triapitsyn, Serguei V.
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mymaridae
Mymar
Mymar venustum

description: Mymar venustum Girault, 1911
Mymar venustum Girault, 1911 [84]: 94. Holotype ♀ (USNM). TL: USA, Pennsylvania, Greensburg. Girault, 1911 [91]: 188
(description); Girault, 1911 [96]: 323 (list); Girault, 1917 [324]: 99 (description); Girault, 1917 [428]: 12 (key); Annecke,
1961a: 550 (synonymy under M. pulchellum); Triapitsyn & Berezovskiy, 2001: 16 (type material, possible good species);
Donev & Triapitsyn, 2010: 67 (re-instated as valid species); Triapitsyn, 2018a: 148 (diagnostic comments), 150 (key), 152
(distribution). Mymarilla venusta: Peck, 1951: 419 (generic transfer, catalogue). Pterolinononyktera venusta: Peck, 1963: 50 (generic transfer, catalogue). Mymar venusta: Yoshimoto, 1990: 60 (list). Mymar cincinnati Girault, 1917 [324]: 99. Holotype ♂ (USNM). TL: USA, Maryland, Glendale. Synonymy by Donev & Tri-
apitsyn, 2010: 67, from previous synonymy under M. pulchellum by Annecke, 1961a: 550. Girault, 1929 [428]: 12 (key);
Annecke, 1961a: 551 (unplaced species) [AT]; Burks, 1979: 1031 (catalogue); Triapitsyn & Berezovskiy, 2001: 7 (key),
16 (description). Mymarilla cincinnati: Peck, 1951: 418 (generic transfer, catalogue). Pterolinononyktera cincinnati: Peck, 1963: 50 (generic transfer, catalogue). Mymar cincinati [sic]: Yoshimoto, 1990: 60 (list).
Distribution. USA: IL, MD, NY, PA.
description: Published as part of Huber, John T., Read, Jennifer D. & Triapitsyn, Serguei V., 2020, Illustrated key to genera and catalogue of Mymaridae (Hymenoptera) in America north of Mexico, pp. 1-411 in Zootaxa 4773 (3) on page 234, DOI: 10.11646/zootaxa.4773.1.1, http://zenodo.org/record/3821373
Additional file 8: Figure S6. of Genome-wide studies reveal novel and distinct biological pathways regulated by SIN3 isoforms
Creators: name: Nirmalya Saha
name: Mengying Liu
name: Ambikai Gajan
name: Pile, Lori
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer

description: ChIP-seq tracks representing enrichment of SIN3 isoforms over Stat92E, Sam-S, Gclm and tum. This figure is related to Figs.Â 4 and 6 (PDF 528Â kb)
Cosmic Expansion and Noether Gauge Symmetries in $f(R,T,R_{μν}T^{μν})$ Gravity
Creators: name: Nawazish, Iqra
name: Sharif, M.
Publisher: name: arXiv
Year: 2024
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: The present work explores different evolutionary phases of isotropically homogeneous and flat cosmos filled with dust fluid in non-minimally coupled gravity. We consider different models of this gravity to discuss the presence of symmetry generators together with conserved integrals using Nother Gauge symmetry scheme. In most of the cases, we obtain temporal and scaling symmetries that yield conservation of energy and linear momentum, respectively. In the absence of contracted Ricci and energy-momentum tensors, we obtain maximum symmetries but none of them correspond to any standard symmetry or conservation law. We formulate exact solutions and construct graphical analysis of standard cosmological parameters. We observe realistic nature of new models via squared speed of sound, viability conditions suggested by Dolgov-Kawasaki instability and state-finder parameters. We investigate the behavior of fractional densities and check the compatibility with Planck 2018 observational data. The new models are stable and viable preserving compatibility with $Λ$CDM and Chaplygin gas models. It is concluded that most of the solutions favor accelerated cosmic expansion.
description: 31 pages, 11 figures
X-ray absorption spectroscopy as a tool for characterizing sulfur based reactive intermediates
Creators: name: Martin-Diaconescu, Vlad
Publisher: name: University of British Columbia
Year: 2010

description: Sulfur K-edge X-ray absorption spectroscopy (XAS) has proven to be a great tool for the investigation of sulfur oxidation states and sulfur-metal ligand bonding. In this thesis, XAS has been applied in the detection and characterization of sulfur-based reactive intermediates and products of photo-reacted sulfur species, with applications in both bioinorganic and inorganic chemistry. Low molecular weight thiols and their derivatives have important protein modulation, signal transduction and antioxidant activities. This includes glutathione (GSH), nitrosoglutathione (GSNO), and lipoic acid (LA), which are involved in complex redox pathways resulting in a variety of intermediates and products that can be difficult to characterize. These compounds have been used as models for thiol nitrosation and oxidation reactions, and their reactivity was probed with sulfur K-edge XAS, which has been developed into a valuable tool for the investigation of sulfur-containing radical species and related non-radical intermediates. XAS was also applied to investigate the reactivity of p-toluene sulfonyl chloride, an initiator in metal catalyzed living radical polymerization, to explore the effect of hyperconjugation on the reactivity of the S-Cl bond. A series of model compounds of the form RSO₂G(G = -Cl, -OH, -alkyl) were used to evaluate the effect of aryl versus alkyl R groups on the photo-reactivity and orbital mixing of the S-G bond.
Additional file 1: Table S2. of Prognostic impact of circulating Her-2-reactive T-cells producing pro- and/or anti-inflammatory cytokines in elderly breast cancer patients
Creators: name: Jithendra Bailur
name: Evelyna Derhovanessian
name: Gueckel, Brigitte
name: Pawelec, Graham
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Plant Biology

description: Kaplan-Meier analysis of clinico-pathological parameters in older patients. (DOCX 17Â kb)
Additional file 6: Figure S4. of Genome-wide studies reveal novel and distinct biological pathways regulated by SIN3 isoforms
Creators: name: Nirmalya Saha
name: Mengying Liu
name: Ambikai Gajan
name: Pile, Lori
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology

description: ChIP-seq tracks representing the enrichment of SIN3 isoforms over genes shown in Fig.Â 1. This figure is related to Fig.Â 3 (PDF 6815Â kb)
Computer simulation of infrared spectra and structures of molecular nanoparticles
Creators: name: Firanescu, George
Publisher: name: University of British Columbia
Year: 2010

description: Molecular nanoparticles, i.e. molecular aggregates held together by weak intermolecular interactions, are ubiquitous in planetary atmospheres and the interstellar space. Although they play a crucial role for radiative energy transfer and chemical processes, the understanding of their properties — which can differ significantly from those of the bulk — is still in its infancy. The present thesis is devoted to a better understanding of the influence of intrinsic properties of these particles on their infrared spectra. The influence of shape, size, architecture and phase on infrared spectra is modeled at a molecular level and propensity rules are established. The high complexity of these huge aggregates, which are composed of up to tens of thousands of molecules, makes a straightforward interpretation of their infrared spectra difficult or even impossible. The present thesis makes use of a combination of a quantum mechanical model for the calculation of the vibrational spectra — the extended vibrational exciton model — and a molecular dynamics approach for the generation of the particle structures. Calculations are performed for pure and mixed aggregates containing NH₃,SF₆, C0₂,CO, and CHF₃.With a microscopic model at hand, it becomes even possible to go beyond system specific effects to uncover general underlying trends.
Additional file 1: S1. of Sexually antagonistic selection on genetic variation underlying both male and female same-sex sexual behavior
Creators: name: Berger, David
name: You, Tao
name: Maravillas Minano
name: Grieshop, Karl
name: Lind, Martin
name: Arnqvist, Göran
name: Maklakov, Alexei
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Summary of Pilot study – Estimating broad sense heritability and sex-specific genetic variation in same-sex mounting and locomotor activity using isofemale lines. S2: Figure on preliminary responses in same-sex mounting (Mean ± 1SE) to sex-limited artificial selection over the first two (out of three) generations. S3: Full summary statistics and figure on responses to selection in same-sex mounting. S4: Full summary statistics and figure on responses to selection in locomotor activity. S5: Full summary statistics and figure on responses to selection in male perception. S6: Full summary statistics and figure on responses to selection in lifetime reproductive success. S7: Full summary statistics on sex-specific genetic covariances between behavioral traits and LRS. (DOCX 355 kb)
Additional File 25:
Creators: name: Adjalley, Sophie
name: Scanfeld, Daniel
name: Kozlowski, Elyse
name: Llinรกs, Manuel
name: Fidock, David
Publisher: name: Figshare
Year: 2015
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Zipped file folder containing code and pseudocode for HATS analysis. These files can be downloaded from http://www.fidock.org/data/fidock_source_code.zip . (DOCX 32 kb)
Reducing False Discoveries in Statistically-Significant Regional-Colocation Mining: A Summary of Results
Creators: name: Ghosh, Subhankar
name: Gupta, Jayant
name: Sharma, Arun
name: An, Shuai
name: Shekhar, Shashi
Publisher: name: arXiv
Year: 2024
Subjects: subject: Machine Learning (cs.LG)
subject: Information Retrieval (cs.IR)
subject: General Economics (econ.GN)
subject: Applications (stat.AP)
subject: FOS: Computer and information sciences
subject: FOS: Economics and business
subject: E.m; F.2; E.1; H.3; I.5; J.0

description: Given a set \emph{S} of spatial feature types, its feature instances, a study area, and a neighbor relationship, the goal is to find pairs $<$a region ($r_{g}$), a subset \emph{C} of \emph{S}$>$ such that \emph{C} is a statistically significant regional-colocation pattern in $r_{g}$. This problem is important for applications in various domains including ecology, economics, and sociology. The problem is computationally challenging due to the exponential number of regional colocation patterns and candidate regions. Previously, we proposed a miner \cite{10.1145/3557989.3566158} that finds statistically significant regional colocation patterns. However, the numerous simultaneous statistical inferences raise the risk of false discoveries (also known as the multiple comparisons problem) and carry a high computational cost. We propose a novel algorithm, namely, multiple comparisons regional colocation miner (MultComp-RCM) which uses a Bonferroni correction. Theoretical analysis, experimental evaluation, and case study results show that the proposed method reduces both the false discovery rate and computational cost.
Additional file 1: of A spherical-plot solution to linking acceleration metrics with animal performance, state, behaviour and lifestyle
Creators: name: Wilson, Rory
name: Holton, Mark
name: Walker, James
name: Shepard, Emily
name: D. Scantlebury
name: Wilson, Vianney
name: Wilson, Gwendoline
name: Tysse, Brenda
name: Gravenor, Mike
name: Ciancio, Javier
name: McNarry, Melitta
name: Mackintosh, Kelly
name: Qasem, Lama
name: Rosell, Frank
name: Graf, Patricia
name: Quintana, Flavio
name: Gomez-Laich, Agustina
name: Juan-Emilio Sala
name: Mulvenna, Christina
name: Marks, Nicola
name: Jones, Mark
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified

description: Methods. Changing shapes for frequency distributions. Figure S1. A 3-d scatter plot (g-sphere) of static (orthogonal) tri-axial acceleration data. Figure S2. A spherical coordinateâ  s visualization of (a) postural state plotted onto the surface of a sphere in three-dimensional space, (b) points joined together in chronological order, (c) projecting the data outwards from the sphere according to other parameters. Figure S3. A spherical histogram (Dubai plot) visualization to depict frequent postural states. Figure S4. Histogram, Frequency shape (stacked), fixed shape (skittle) from urchin plots. Figure S5. G-urchin of skittle shape and stacked frequency urchins emitted from the centre of each facet of the sphere. Figure S6. Overview of user interface for a program in which spherical plots can be created. Figure S7. G-spheres and comparable g-urchins derived from a rod-mounted tri-axial accelerometer showing fly-fishing visualisations. (DOCX 5289 kb)
Parameter Tuning of the Firefly Algorithm by Standard Monte Carlo and Quasi-Monte Carlo Methods
Creators: name: Joy, Geethu
name: Huyck, Christian
name: Yang, Xin-She
Publisher: name: arXiv
Year: 2024
Subjects: subject: Neural and Evolutionary Computing (cs.NE)
subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences
subject: 68T20, 68W50

description: Almost all optimization algorithms have algorithm-dependent parameters, and the setting of such parameter values can significantly influence the behavior of the algorithm under consideration. Thus, proper parameter tuning should be carried out to ensure that the algorithm used for optimization performs well and is sufficiently robust for solving different types of optimization problems. In this study, the Firefly Algorithm (FA) is used to evaluate the influence of its parameter values on its efficiency. Parameter values are randomly initialized using both the standard Monte Carlo method and the Quasi Monte-Carlo method. The values are then used for tuning the FA. Two benchmark functions and a spring design problem are used to test the robustness of the tuned FA. From the preliminary findings, it can be deduced that both the Monte Carlo method and Quasi-Monte Carlo method produce similar results in terms of optimal fitness values. Numerical experiments using the two different methods on both benchmark functions and the spring design problem showed no major variations in the final fitness values, irrespective of the different sample values selected during the simulations. This insensitivity indicates the robustness of the FA.
description: International Conference on Computational Science (ICCS2024)