Additional file 3: of The complete mitochondrial genome of parasitic nematode Camallanus cotti: extreme discontinuity in the rate of mitogenomic architecture evolution within the Chromadorea class
Creators: name: Zou, Hong
name: Jakovlić, Ivan
name: Chen, Rong
name: Zhang, Dong
name: Zhang, Jin
name: Li, Wen-Xiang
name: Wang, Gui-Tang
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: FOS: Earth and related environmental sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: FOS: Clinical medicine
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: FOS: Mathematics
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Mitogenomic gene order rearrangements in the Camallanina suborder. (A). A hypothetical outline of gene order rearrangements between Camallanus cotti and ancestral node A1. Ancestral node A1 is shown in Fig. 1. Genes and mitogenome fragments presumed to have undergone rearrangements are highlighted by different colours. Hypothetical rearrangement mechanism is indicated on the left, and arrows are used to indicate the putative translocation pathways. Where the presumed mechanism is duplication + transposal, arrows indicate the positions of both fragments in the downstream genome, where the fragment presumed to be translocated is labelled with the letter C. Where colouring is insufficiently unambiguous, fragments undergoing a rearrangement event are additionally underlined. The order in which the events are shown is (mostly) random. A star is used to indicate a deletion and a thick blue arrow to indicate a tRNA remolding event. (B) A hypothetical outline of gene order rearrangements between ancestral nodes A2 and A1. Ancestral nodes are shown in Fig. 1. Genes and mitogenome fragments presumed to have undergone rearrangements are highlighted by different colours. Hypothetical rearrangement mechanism is indicated on the left, and arrows are used to indicate the putative translocation pathways. Where colouring is insufficiently unambiguous, fragments undergoing a rearrangement event are additionally underlined. The order in which the events are shown is (mostly) random. MLGO was used to infer the putative ancestral gene orders. (C). Hypothetical evolutionary history of gene order rearrangements between ancestral nodes A2 and A1 inferred by CREX algorithm. Ancestral nodes are shown in Fig. 1. Tdrl indicates a tandem duplication and random loss event, where a duplication event (not shown) is followed by the loss of some elements (orange-shaded). This results in the remaining copies (blue-shaded) being moved to the front. (PDF 514 kb)