cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Transgenic rice Oryza glaberrima with higher CPD photolyase activity alleviates UVB-caused growth inhibition
Creators: name: Mmbando, Gideon Sadikiel
name: Teranishi, Mika
name: Hidema, Jun
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Science Policy
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: The ultraviolet B (UVB) sensitivity of rice cultivated in Asia and Africa varies greatly, with African rice cultivars (Oryza glaberrima Steud. and O. barthii A. Chev.) being more sensitive to UVB because of their low cyclobutane pyrimidine dimer (CPD) photolyase activity, which is a CPD repair enzyme, relative to Asian rice cultivars (O. sativa L.). Hence, the production of UVB-resistant African rice with augmented CPD photolyase activity is of great importance, although difficulty in transforming the African rice cultivars to this end has been reported. Here, we successfully produced overexpressing transgenic African rice with higher CPD photolyase activity by modifying media conditions for callus induction and regeneration using the parental line (PL), UVB-sensitive African rice TOG12380 (O. glaberrima). The overexpressing transgenic African rice carried a single copy of the CPD photolyase enzyme, with a 4.4-fold higher level of CPD photolyase transcripts and 2.6-fold higher activity than its PL counterpart. When the plants were grown for 21 days in a growth chamber under visible radiation or with supplementary various UVB radiation, the overexpressing transgenic plants have a significantly increased UVB resistance index compared to PL plants. These results strongly suggest that CPD photolyase remains an essential factor for tolerating UVB radiation stress in African rice. As a result, African rice cultivars with overexpressed CPD photolyase may survive better in tropical areas more prone to UVB radiation stress, including Africa. Collectively, our results provide strong evidence that CPD photolyase is a useful biotechnological tool for reducing UVB-induced growth inhibition in African rice crops of O. glaberrima.
title: ҲУҚУҚБУЗАРЛИКЛАР ПРОФИЛАКТИКАСИ ФАОЛИЯТИНИ БАҲОЛАШ ИНДИКАТОРЛАРНИНГ ТАКОМИЛЛАШТИРИШ
title: ҲУҚУҚБУЗАРЛИКЛАР ПРОФИЛАКТИКАСИ ФАОЛИЯТИНИ БАҲОЛАШ ИНДИКАТОРЛАРНИНГ ТАКОМИЛЛАШТИРИШ
titleType: AlternativeTitle
Creators: name: Адамбаев, Камолбек
Publisher: name: Zenodo
Year: 2024

description: Мақолада ҳуқуқбузарликлар профилактикаси фаолиятини баҳолаш индикаторларнинг такомиллаштириш бўйича амалдаги қонунчилик ва ҳуқуқшунос олимлар фикр-мулоҳазалари ўрганилиб муаллиф томонидан таклиф ҳамда тавсиялар ишлаб чиқилган.
Tachyonic Resonance Preheating in Expanding Universe
Creators: name: Abolhasani, Ali Akbar
name: Firouzjahi, Hassan
name: Sheikh-Jabbari, M. M.
Publisher: name: arXiv
Year: 2009
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: In this paper the tachyonic resonance preheating generated from the bosonic trilinear $ϕχ^2$ interactions in an expanding Universe is studied. In $λϕ^4/4$ inflationary model the trilinear interaction, in contrast to the four-legs $ϕ^2χ^2$, breaks the conformal symmetry explicitly and the resonant source term becomes non-periodic, making the Floquet theorem inapplicable. We find that the occupation number of the produced $χ$-particles has a non-linear exponential growth with exponent $\sim x^{3/2}$, where $x$ is the conformal time. This should be contrasted with preheating from a periodic resonant source, arising for example from the four-legs $ϕ^2χ^2$ interaction, where the occupation number has a linear exponential growth. We present an analytic method to compute the interference term coming from phases accumulated in non-tachyonic scattering regions and show that the effects of the interference term causes ripples on $x^{3/2}$ curve, a result which is confirmed by numerical analysis. Studying the effects of back-reaction of the $χ$-particles, we show that tachyonic resonance preheating in our model can last long enough to transfer most of the energy from the background inflation field $ϕ$, providing an efficient model for preheating in the chaotic inflation models.
description: This work is dedicated to the memory of Lev Kofman
Study of Machine Learning Algorithm on Phonocardiogram Signals for Detecting of Coronary Artery Disease
Creators: name: Mandala, Satria
name: Pramudyo, Miftah
name: Rizal, Ardian
name: Fikry, Maurice
Publisher: name: Indonesia Journal on Computing (Indo-JC)
Year: 2021

description: Several methods of detecting coronary artery disease (CAD) have been developed, but they are expensive and generally use an invasive catheterization method. This research provides a solution to this problem by developing an inexpensive and non-invasive digital stethoscope for detecting CAD. To prove the effectiveness of this device, twenty-one subjects consisting of 11 CAD patients and 10 healthy people from Hasan Sadikin Hospital Bandung were selected as validation test participants. In addition, auscultation was carried out at four different locations around their chests, such as the aorta, pulmonary, tricuspid, and mitral. Then the phonocardiogram data taken from the stethoscope were analyzed using machine learning. To obtain optimal detection accuracy, several types of kernels such as radial basis function kernel (RBF), polynomial kernel and linear kernel of Support Vector Machine (SVM) have been analyzed. The experimental results show that the linear kernel outperforms compared to others; it provides a detection accuracy around 66%. Followed by RBF is 56% and Polynomial is 46%. In addition, the observation of phonocardiogram signals around the aorta is highly correlated with CAD, giving an average detection accuracy for the kernel of 66%; followed by 44% tricuspid and 43% pulmonary.
description: Indonesia Journal on Computing (Indo-JC), Vol. 5 No. 3 (2020): December, 2020
Evaluation of the safety and nutritional equivalency of maize grain with genetically modified event DP-Ø23211-2
Creators: name: Smith, Brenda L.
name: Zimmermann, Cindi S.
name: Carlson, Anne B.
name: Mathesius, Carey A.
name: Mukerji, Pushkor
name: McNaughton, James L.
name: Walker, Carl A.
name: Roper, Jason M.
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Medicine
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Science Policy

description: Feeding studies were conducted with rats and broiler chickens to assess the safety and nutrition of maize grain containing event DP-Ø23211-2 (DP23211), a newly developed trait-pyramid product for corn rootworm management. Diets containing 50% ground maize grain from DP23211, non-transgenic control, or non-transgenic reference hybrids (P0928, P0993, and P1105) were fed to Crl:CD®(SD) rats for 90 days. Ross 708 broilers were fed phase diets containing up to 67% maize grain from each source for 42 days. Body weight, gain, and feed conversion were determined for comparisons between animals fed DP23211 and control diets in each study. Additional measures included clinical and neurobehavioral evaluations, ophthalmology, clinical pathology, organ weights, and gross and microscopic pathology for rats, and carcass parts and select organ yields for broilers. Reference groups were included to determine if any observed significant differences between DP23211 and control groups were likely due to natural variation. No diet-related effects on mortality or evaluation measures were observed between animal fed diets produced with DP23211 maize grain and animal fed diets produced with control maize grain. These studies show that maize grain containing event DP-Ø23211-2 is as safe and nutritious as non-transgenic maize grains when fed in nutritionally adequate diets. The results are consistent with previously published studies, providing further demonstration of the absence of hazards from edible-fraction consumption of genetically modified plants.
Hybrid Array List: An Efficient Dynamic Array with Linked List Structure
Creators: name: Abu Sara, Mutaz Rasmi
name: Klaib, Mohammad F. J.
name: Hasan, Masud
Publisher: name: Indonesia Journal on Computing (Indo-JC)
Year: 2021

description: In this paper, we present an efficient dynamic array, called hybrid array list (HAL), whose structure is a linked list and each node is an array. In a HAL H, each node, called a chunk, is an array of size at most 2c, where c is an initial array size determined by the user. As the elements are added or deleted in H, it grows or shrinks by the number of nodes in the linked list as well as by the sizes of the chunks. We consider the operations append, insert and delete as well as a helping operation actual position in H. These operations run in O(1), O(m+c), O(m+c) and O(m) time, respectively, in worst case, where m is the number of chunks in H. These running times are much less than the worst case running time, which is O(n), where n is the total number of elements in H, taken by these operations in linked list or array. We implement HAL and compare these operations with similar operations in array list of Java and vector of C++. Our results show that H can perform substantially better when c is about half of the total number of elements.
description: Indonesia Journal on Computing (Indo-JC), Vol. 5 No. 3 (2020): December, 2020
title: ΕΦΑΡΜΟΓΗ ΚΑΛΩΝ ΠΡΑΚΤΙΚΩΝ ΜΕΣΩ ΔΙΑΔΡΟΜΩΝ ΓΙΑ ΕΜΠΟΔΙΖΟΜΕΝΑ ΑΤΟΜΑ : H Προσβασιμότητα των ΑΜΕΑ στην Παλιά Πόλη των Χανίων
Creators: name: Μαντζουνη Καλλιοπη
Publisher: name: Technical University of Crete
Year: 2023

description: Στην παρούσα διπλωματική εργασία μελετάται η πόλη των Χανίων εστιάζοντας στο τμήμα της Παλιάς Πόλης. Συγκεκριμένα μέσω χαρτών,  διαγραμμάτων και απεικονίσεων  που αφορούν τις κινήσεις του πεζού, του αυτοκινήτου και του ποδηλάτου, τα δίκτυα δρόμων, και την πρόσβαση σε δημόσιους χώρους και μνημεία, διατυπώνονται συμπεράσματα για την καθημερινότητα των ατόμων ΑΜΕΑ.
Σκοπός είναι ο εντοπισμός των προβλημάτων σε τομείς της καθημερινότητας και η ενίσχυση του αστικού συνόλου μέσα από την εφαρμογή καλών πρακτικών, με μέσα και υποδομές, οι οποίες θα εξασφαλίσουν την προσβασιμότητα σε άτομα ΑΜΕΑ.

description: In recent years, the European Commission has been working on raising awareness concerning the living conditions of people with disabilities, the challenges they face in everyday life, and the tools to improve their daily lives.  A key concern is the proper shaping and utilization of the environment in which they live. This research paper analyses the accessibility and the ways of improving the mobility of people with disabilities in European cities with historical centers. Specifically, the paper is divided into three chapters with their subsections. The first chapter is the introductory part of the research and two major international policies on accessibility and people with disabilities, information is given from the International Convention of the United Nations International Convention on the Rights of Persons with Disabilities and sustainable urban mobility plans (SUMPS) are described. The importance of the European Disability Strategy 2010 - 2020 and its priority areas are also examined. The second chapter is based on the competition for the Most Accessible Cities in Europe that have been followed by Avila (Spain), Milan (Italy), and Lyon (France), which have conquered first place.  This analysis focuses on their historical centers and how people with disabilities have been integrated into them. This is achieved by examples relating to European cities and the shaping of their mobility for the benefit of people with disabilities. In the third chapter, the conclusions of the above chapters are recorded with the aim of studying and highlighting the SUMPS through the exploration of good practices in the field of sustainable mobility practices followed by these cities in their historic center, promoting sustainable mobility for all people with disabilities.
Additional file 1 of Primary high-grade serous ovarian cancer cells are sensitive to senescence induced by carboplatin and paclitaxel in vitro
Creators: name: Uruski, Paweł
name: Sepetowska, Agnieszka
name: Konieczna, Corinna
name: Pakuła, Martyna
name: Wyrwa, Michał
name: Tussupkaliyev, Akylbek
name: Tykarski, Andrzej
name: Mikuła-Pietrasik, Justyna
name: Książek, Krzysztof
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Computational Biology

description: Additional file 1:: Original uncropped and unprocessed immunoblots for cyclins and signaling molecules.
title: Примерные основные образовательные программы по направлениям подготовки УГСН 44.00.00 «Образование и педагогические науки» (бакалавриат). Т.6
title: Методическое пособие
titleType: Subtitle
Creators: name: Алмазова А.А.
name:  Бабина Г.В.
name:  Болотова Е.Л.
name:  Головчиц Л.А.
name:  Грифцова И.Н.
name:  Демакова И.Д.
name:  Денискина В.З.
name:  Ерохина Е.Л.
name:  Клименко А.В.
name:  Комова Н.С.
name:  Кроткова А.В.
name:  Кудрявцева Д.А.
name:  Кулакова Е.В.
name:  Лазарева Е.Ю.
name:  Лубков А.В.
name:  Морозюк С.Н.
name:  Набокова Л.А.
name:  Никандрова Т.С.
name:  Нурлыгаянов И.Н.
name:  Рыжов А.Н.
name:  Сизова А.В.
name:  Соловьева Т.А.
name:  Талина Г.В.
name:  Трубина Л.А.
name:  Уманская Т.М.
Publisher: name: Московский педагогический государственный университет
Year: 2019

description: Сборник представляет собой методическое пособие для образовательных организаций высшего образования, реализующих образовательные программы по УГНС «Образование и педагогические науки». Материалы, представленные в пособии, содержат общую характеристику образовательных программ высшего образования по УГНС «Образование и педагогические науки», планируемые результаты их освоения, примерные учебные планы и программы дисциплин (модулей) и практик, рекомендации по разработке фондов оценочных средств для промежуточной аттестации и программы государственной итоговой аттестации, другие методические разработки. Данные материалы могут быть рассмотрены как методический конструктор при проектировании вузами основных профессиональных образовательных программ высшего образования по УГНС «Образование и педагогические науки». Представленные в пособии примерные основные образовательные программы утверждены Федеральным учебно-методическим объединением УГНС «Образование и педагогические науки».
description: The collection is a Handbook for educational institutions of higher education, implementing educational programs for UGNS "Education and pedagogical Sciences". The material presented in the Handbook contain the General characteristics of educational programs of higher education at the UGNS "Education and pedagogical Sciences", the planned results of learning, exemplary curricula and programs of disciplines (modules) and practices, recommendations for development funds of assessment tools for intermediate certification and programs of the state final certification, other methodological developments. These materials can be considered as methodical a designer when designing the universities of the basic professional educational programs of higher education at the UGNS "Education and pedagogical Sciences". Presented in the manual approximate basic educational program approved by the Federal educational-methodical Association of ugns "Education and pedagogical Sciences".
The level of Cry1Ac endotoxin and its efficacy against H. armigera in Bt cotton at large scale in Pakistan
Creators: name: Jamil, Shakra
name: Shahzad, Rahil
name: Rahman, Sajid Ur
name: Iqbal, Muhammad Zaffar
name: Yaseen, Muhammad
name: Ahmad, Shakeel
name: Fatima, Rida
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology

description: A biophysical survey was conducted in 15 cotton-growing districts of Pakistan. Four hundred cotton growers were approached and inquired about the production technology of Bt cotton. Further, 25 strip tests using combo strips (Cry1Ac, Cry2Ab, Vip3Aa and Cp4, EPSPS gene) were performed at each farmer’s field. Out of 10,000 total-tested samples, farmers claimed 9682 samples as Bt and 318 samples as non-Bt. After performing a strip test, 1009 and 87 samples were found false negative and false positive, respectively. Only 53 samples were found positive for Cry2Ab, 214 for EPSPS and none for Vip3Aa gene. Quantification of Cry endotoxin and bioassay studies were performed by taking leaves from upper, middle, and lower canopies, and fruiting parts at approximately 80 days after sowing from 89 varieties. Expression was highly variable among different canopies and fruiting parts. Moreover, Cry endotoxin expression and insect mortality varied significantly among varieties from 0.26 µg g−1 to 3.54 µg g−1 with mortality ranging from 28 to 97%, respectively. Highest Cry1Ac expression (3.54 µg g−1) and insect mortality (97%) were observed for variety FH-142 from DG Khan. Cry endotoxin expression varied significantly across various plant parts, i.e., IUB-13 variety from upper canopy documented 0.34 µg g−1 expression with 37% insect mortality in Layyah to 3.42 µg g−1 expression and 96% insect mortality from DG Khan. Lethal dose, LD95 (2.20 µg g−1) of Cry1Ac endotoxin was optimized for effective control of H. armigera. Our results provided evidence of practical resistance in H. armigera and way forward.
Indirect Hamiltonian Identification through a small gateway
Creators: name: Burgarth, Daniel
name: Maruyama, Koji
Publisher: name: arXiv
Year: 2009
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Identifying the nature of interactions in a quantum system is essential in understanding any physical phenomena. Acquiring information on the Hamiltonian can be a tough challenge in many-body systems because it generally requires access to all parts of the system. We show that if the coupling topology is known, the Hamiltonian identification is indeed possible indirectly even though only a small gateway to the system is used. Surprisingly, even a degenerate Hamiltonian can be estimated by applying an extra field to the gateway.
description: 5 pages, 1 figure; see Video Abstract at http://www.quantiki.org/video_abstracts/09030612
Dominance and fitness costs of insect resistance to genetically modified Bacillus thuringiensis crops
Creators: name: Huang, Fangneng
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Biotechnology
subject: Evolutionary Biology
subject: Ecology
subject: Cancer
subject: Hematology
subject: Plant Biology
subject: 60506 Virology

description: Evolution of resistance to genetically modified Bacillus thuringiensis (Bt) crops in pest populations is a major threat to the sustainability of the technology. Incidents of field resistance that have led to control problems of Bt crops or significantly reduced susceptibility of individual Bt proteins in pyramided plants have increased dramatically across the world, especially in recent years. Analysis of globally published data showed that 61.5% and 60.0% of the cases of resistance with major alleles that allowed homozygous resistant genotypes to survival on Bt crops were functionally non-recessive and did not involve fitness costs, respectively. Dominance levels (DFLs) measured on Bt plants ranged from −0.02 to 1.56 with a mean (± sem) of 0.35 ± 0.13 for the 13 cases of single-gene resistance to Bt plants that have been evaluated. Among these, all six cases with field control problems were functionally non-recessive with a mean DFL of 0.63 ± 0.24, which was significantly greater than the DFL (0.11 ± 0.07) of the seven cases without field resistance. In addition, index of fitness costs (IFC) of major resistance was calculated for each case based on the fitness of resistant (R’R’) and heterozygous (R’S’) genotypes on non-Bt plants divided by the fitness of their susceptible (S’S’) counterparts. The estimated IFCs for 15 cases of single-gene resistance were similar for R’R’ and R’S’, and for the cases with and without field resistance; and the values averaged 1.10 ± 0.12 for R’R’ and 1.20 ± 0.18 for R’S’. Limited published data suggest that resistance of insects to dual/multiple-gene Bt crops is likely to be more recessive than the related single-gene resistance, but their IFCs are similar. The quantitative analysis of the global data documents that the prevalence of non-recessive resistance has played an essential role in the widespread evolution of resistance to Bt crops, while the lack of fitness costs is apparently not as critical as the non-recessive resistance. The results suggest that planting of ‘high dose’ traits is an effective method for Bt crop IRM and more comprehensive management strategies that are also effective for functionally non-recessive resistance should be deployed.
Scaling Block Conjugate Gradient Variants Orthomin and Orthodir
Creators: name: Aykanat, Cevdet
name: Oguz Selvitopi
name: M. Ozan Karsavuran
Publisher: name: Zenodo
Year: 2019
Subjects: 2D-partitioning
FET-HPC
Block CG variants
Orthomin and Orthodir variants

description: Iterative solvers based on Krylov subspace methods are widely used for the solution of the problems that appear in large-

scale parallel scienti c simulations. These solvers, when parallelized, often su er from global synchronization overheads

due to the collective communication operations. Block CG variants have the advantage of reduced communication

overheads at the expense of increased computation per iteration. The aim of this project is the scalable parallelization of

two such block CG variants, Orthomin and Orthodir, proposed by FET-HPC project NLAFET to enable the use of these

methods on future exascale systems through reducing number of the synchronization points. We investigate 1D- and

2D-partitioning of the sparse coecient matrix for encapsulating the minimization of the communication overhead as well

as one- and two-constraint partitioning for computational load balancing. Two di erent parallel codes for Orthomin and

Orthodir variants are developed. The relative performance of di erent partitioning techniques are evaluated by running

the parallel Orthomin and Orthodir codes on two di erent HPC systems up to 1024 processors with 26 symmetric positive

de nite matrices. The number of rows in these matrices ranges between 13,681 and 1,391,349, whereas the number of

nonzero entries ranges between 340,431 and 77,651,847.
Audit of IT Governance Diskominfo Kota Serang Using COBIT 5
Creators: name: Katami, Mochamad Arie Rafli
name: Darwiyanto, Eko
name: Firdaus, Yanuar Arie
Publisher: name: Indonesia Journal on Computing (Indo-JC)
Year: 2021

description: The existing IT governance in Department of Communication and Informatics (Diskominfo) Serang City has an obstacle. The obstacle is innovation that has not fully facilitated the day-to-day governance and operational processes. Because good IT governance will greatly support the activities of the organization in achieving the goals set by the organization's vision and mission because it requires a harmony in business strategy and IT strategy. IT Governance is also able to find new opportunities through the application of innovative technology. To find out the current level of capability in Department of Communication and Informatics Serang City, IT governance audits are needed. COBIT 5 generates profits through effective IT management and management. The Department of Communication and Informatics Serang City target ability level is level 2 (Managed Process).
description: Indonesia Journal on Computing (Indo-JC), Vol. 5 No. 3 (2020): December, 2020
Obtaining the diffusion coefficient for cosmic ray propagation in the Galactic Centre Ridge through time-dependent simulations of their gamma-ray emission
Creators: name: Dimitrakoudis, Stavros
name: Mastichiadis, Apostolos
name: Geranios, Athanasios
Publisher: name: arXiv
Year: 2008
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Recent observations by the H.E.S.S. collaboration of the Galactic Centre region have revealed what appears to be gamma-ray emission from the decay of pions produced by interactions of recently accelerated cosmic rays with local molecular hydrogen clouds. Synthesizing a 3-D hydrogen cloud map from the available data and assuming a diffusion coefficient of the form kappa(E) = kappa_0(E/E0)^delta, we performed Monte Carlo simulations of cosmic ray diffusion for various propagation times and values of kappa_0 and delta. By fitting the model gamma-ray spectra to the observed one we were able to infer the value of the diffusion coefficient in that environment (kappa = 3.0 +/- 0.2 kpc^2 Myr^-1 for E = 10^12.5 eV and for total propagation time 10^4 yr) as well as the source spectrum (2.1 < gamma < 2.3). Also, we found that proton losses can be substantial, which justifies our approach to the problem.
description: 7 pages, 7 figures, accepted for publication in Astroparticle Physics
Implementation Information Gain Feature Selection for Hoax News Detection on Twitter using Convolutional Neural Network (CNN)
Creators: name: Farid, Husnul Khotimah
name: Setiawan, Erwin Budi
name: Kurniawan, Isman
Publisher: name: Indonesia Journal on Computing (Indo-JC)
Year: 2021

description: The development of information and communication technology is currently increased, especially related to social media. Nowadays, many people get information through social media, especially Twitter, because of its easy access and it doesn't cost much. However, it has a negative impact in the form of spreading fake news or hoaxes that are difficult to detect. In this research, the authors developed a hoax news detection model using the Convolutional Neural Network and the TF-IDF weighting method. Feature selection is performed using Information Gain with various features, such as unigram, bigram, trigram and a combination of the three. Testing is done with 3 scenarios, classification, classification by weighting, classification by weighting and feature selection. The parameter used in the information gain feature selection is the threshold 0.8. The results showed that the classification by weighting and feature selection produced the highest accuracy that is equal to 95.56% on the unigram + bigram features with a comparison of training data and test data 50:50.
description: Indonesia Journal on Computing (Indo-JC), Vol. 5 No. 3 (2020): December, 2020
Additional file 1 of A consensus-based ensemble approach to improve transcriptome assembly
Creators: name: Voshall, Adam
name: Behera, Sairam
name: Li, Xiangjun
name: Yu, Xiao-Hong
name: Kapil, Kushagra
name: Deogun, Jitender S.
name: Shanklin, John
name: Cahoon, Edgar B.
name: Moriyama, Etsuko N.
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Additional file 1. Pipeline schematics for generating benchmark transcriptomic data, assembly benchmarking, and ConSemble assemblies (Pipelines 1–4).
Integrated proteomics and metabolomics analysis of transgenic and gene-stacked maize line seeds
Creators: name: Liu, Weixiao
name: Zhao, Haiming
name: Miao, Chaohua
name: Jin, Wujun
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Unintended effects of genetically modified (GM) crops may pose safety issues. Omics techniques provide researchers with useful tools to assess such unintended effects. Proteomics and metabolomics analyses were performed for three GM maize varieties, 2A-7, CC-2, and 2A-7×CC-2 stacked transgenic maize, and the corresponding non-GM parent Zheng58. Proteomics revealed 120, 271 and 135 maize differentially expressed proteins (DEPs) in the 2A-7/Zheng58, CC-2/Zheng58 and 2A-7×CC-2/Zheng58 comparisons, respectively. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis showed that most DEPs participated in metabolic pathways and the biosynthesis of secondary metabolite. Metabolomics revealed 179, 135 and 131 differentially accumulated metabolites (DAMs) in the 2A-7/Zheng58, CC-2/Zheng58 and 2A-7×CC-2/Zheng58 comparisons, respectively. Based on KEGG enrichment analysis, most DAMs are involved in the biosynthesis of secondary metabolite and metabolic pathways. According to integrated proteomics and metabolomics analysis, the introduction of exogenous EPSPS did not affect the expression levels of six other enzymes or the abundance of seven metabolites involved in the shikimic acid pathway in CC-2 and 2A-7×CC-2 seeds. Six co-DEPs annotated by integrated proteomics and metabolomics pathway analysis were further analyzed by qRT-PCR. This study successfully employed integrated proteomic and metabolomic technology to assess unintended changes in maize varieties. The results suggest that GM and gene stacking do not cause significantly unintended effects.
Remarks on D_p and D_{p-2} with each carrying a flux
Creators: name: Lu, J. X.
name: Xu, Shan-Shan
Publisher: name: arXiv
Year: 2009
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We explore various properties of interaction between D$_p$ and D$_{p'}$ with each carrying a worldvolume flux and with the $p'$-branes placed along $p'$ spatial worldvolume directions of the p-branes at a separation when $p - p' = 2$. Carefully analyzing the annulus amplitudes calculated via the boundary state approach, we find that many features of amplitudes remain similar to those studied when $p = p'$ such as the nature of force on the brane separation, the onset of various instabilities when the brane-separation is on the order of string scale and the occurrence of pair production of open strings when there is a relevant electric flux present. In addition, we have also found many new features of interaction which don't appear in the absence of fluxes or when $p = p'$ in the presence of fluxes, for examples, the nature of interaction can be repulsive and there is no onset of tachyonic instability under certain conditions. Even in the absence of a magnetic flux, we can have an exponential enhancement of the rate of pair production of open strings in certain cases, which may be significant enough to give observational consequences.
description: 15 pages, 3 tables, revised version to appear in PLB
Perceived psychosocial stress and glucose intolerance among pregnant Hispanic women
Creators: name: Whitcomb, B.W.
name: Carbone, E.T.
name: Dole, N.
name: Pekow, P.
name: Solomon, C.G.
name: Silveira, M.L.
name: Chasan-Taber, L.
name: Markenson, G.
name: Braun, B.
name: Manson, J.E.
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2014

description: Aim—Prior literature suggests a positive association between psychosocial stress and the risk of diabetes in non-pregnant populations, but studies during pregnancy are sparse. We evaluated the relationship between stress and glucose intolerance among 1115 Hispanic (predominantly Puerto Rican) prenatal care patients in Proyecto Buena Salud, a prospective cohort study in Western Massachusetts (2006–2011). Methods—Cohen’s Perceived Stress Scale (PSS-14) was administered in early (mean = 12.3 weeks gestation; range 4.1–18 weeks) and mid-(mean = 21.3 weeks gestation; range 18.1–26 weeks) pregnancy. Participants were classified as having a pregnancy complicated by gestational diabetes mellitus, impaired glucose tolerance, and abnormal glucose tolerance, based on the degree of abnormality on glucose tolerance testing between 24 and 28 weeks of gestation. Results—The prevalence of gestational diabetes mellitus, impaired glucose tolerance, and abnormal glucose tolerance was 4.1%, 7.2%, and 14.5%, respectively. Absolute levels of early or mid-pregnancy stress were not significantly associated with glucose intolerance. However, participants with an increase in stress from early to mid-pregnancy had a 2.6-fold increased odds of gestational diabetes mellitus (95% confidence intervals: 1.0–6.9) as compared to those with no change or a decrease in stress after adjusting for age and pre-pregnancy body mass index. In addition, every one-point increase in stress scores was associated with a 5.5 mg/dL increase in screening glucose level (β = 5.5; standard deviation = 2.8; P = 0.05), after adjusting for the same variables. Conclusion—In this population of predominantly Puerto Rican women, stress patterns during pregnancy may influence the risk of glucose intolerance.
Implementation of Dependency Parser Using Artificial Neural Network Methods
Creators: name: Izzah, Nurul
name: Bijaksana, Moch Arif
name: Huda, Arief Fatchul
Publisher: name: Indonesia Journal on Computing (Indo-JC)
Year: 2021

description: In recent years, parsing has become very popular within the scope of NLP (Natural Language Processing) with the presence of Dependency Parser. However, almost all existing Dependency Parser do classifications based on millions of sparse indicator features. This feature is not only bad in drawing conclusions, but also significantly limits the speed of parsing so that the resulting parsing is not optimal. To overcome these problems, changing the use of sparse features becomes dense features to reduce sparsity between words. The Artificial Neural Network classification method is used to produce fast and concise parsing in the Transition-Based Dependency Parser by using 2 hyperparameters. The dataset used in this study is Arabic, Chinese, English, and Indonesian. Based on the evaluation that has been done, it shows a higher result using the second hyperparameter. In testing with English test data, the accuracy value of LAS (Labeled Attachment Score) is 80.4% and UAS (Unlabelled Attachment Score) is 83%, Then with dev data obtained an accuracy value of LAS 81.1% and UAS 83.7%, and parsing speed of 98 sentences per second (sent/s). Keywords: Parsing, dependency parser, transition-based dependency parsing.
description: Indonesia Journal on Computing (Indo-JC), Vol. 5 No. 3 (2020): December, 2020
Additional file 2 of A consensus-based ensemble approach to improve transcriptome assembly
Creators: name: Voshall, Adam
name: Behera, Sairam
name: Li, Xiangjun
name: Yu, Xiao-Hong
name: Kapil, Kushagra
name: Deogun, Jitender S.
name: Shanklin, John
name: Cahoon, Edgar B.
name: Moriyama, Etsuko N.
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Additional file 2. Supplementary Tables (S1–S13).
kappa-Minkowski spacetime as the result of Jordanian twist deformation
Creators: name: Borowiec, A.
name: Pachol, A.
Publisher: name: arXiv
Year: 2008
Subjects: subject: Mathematical Physics (math-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Two one-parameter families of twists providing kappa-Minkowski * -product deformed spacetime are considered: Abelian and Jordanian. We compare the derivation of quantum Minkowski space from two perspectives. The first one is the Hopf module algebra point of view, which is strictly related with Drinfeld's twisting tensor technique. The other one relies on an appropriate extension of "deformed realizations" of nondeformed Lorentz algebra by the quantum Minkowski algebra. This extension turns out to be de Sitter Lie algebra. We show the way both approaches are related. The second path allows us to calculate deformed dispersion relations for toy models ensuing from different twist parameters. In the Abelian case one recovers kappa-Poincar'e dispersion relations having numerous applications in doubly special relativity. Jordanian twists provide a new type of dispersion relations which in the minimal case (related to Weyl-Poincar'e algebra) takes an energy-dependent linear mass deformation form.
description: 23 pages, Revtex4, one comment added, version to be published in Phys. Rev. D
Understanding wine industry sustainability and resiliency as concepts and practices in the Okanagan, Thompson, and Similkameen Valleys
Creators: name: King, Morgan Hilary Kuhtz
Publisher: name: University of British Columbia
Year: 2023

description: Wine production is a growing industry that has become significant environmentally, economically, and culturally in the Okanagan, Thompson, and Similkameen Valleys. Wine production is becoming increasingly vulnerable to climate change due to its close ties to the physical landscapes, as evidenced by the concept of terroir. Due to this vulnerability, resiliency as a concept and a practice has become necessary for creating a wine industry that is sustainable and resilient in the face of the effects of climate change. This study aims to understand the decision-making process regarding sustainability, resilience, and adaptative strategies in vineyards and wineries and to assess a hard adaptative tool, cover crops and a soft adaptative tool, eco-certification. This research was collaborative in the survey design with the British Columbia Wine Grape Council, Sustainable Winegrowing British Columbia, and British Columbia Grape Growers Association. These community associations support the British Columbia wine industry. This collaboration enabled the research to be relevant to the local wine industry and learn the current adaptative strategies to combat climate change. The multi-phase mixed methods case study was successful in learning about the current impacts of climate change, how resiliency and sustainability are thought of and practiced, and the barriers to adaptative strategies. Wine decisionmakers from the Okanagan, Thompson, and Similkameen Valleys exhibited holistic thinking that considered many systems and input levels when making adaptation decisions. Key findings from this research include how sustainability and resiliency are conceptualized separately from how they are practiced, what a sustainable and resilient mindset is, the barriers to adaptation as cost and knowledge transferal, and the importance of viable social networks for adaptations. The results of this research can be used to improve research into sustainability in the wine industry and to increase the sustainability and resiliency of the region by lowering barriers to adaptation to climatic conditions.
Grid-based Image Encryption using Code-based Cryptography
Creators: name: Bhagaskoro, Dian Anggoro Putro
name: Barmawi, Ari Moesriami
Publisher: name: Indonesia Journal on Computing (Indo-JC)
Year: 2021

description: Recently, image is frequently sent or exchanged electronically, such that image security is important. A method for securing images is using RSA. However, RSA needs more time for securing an image. For overcoming the RSA problem, McEliece Cryptosystem is introduced to grid-based image encryption. The image is divided into blocks and each block is divided into grids, then finally McEliece Cryptosystem is applied to the pixels in the grids. Based on the experiment’s result, it was proven that the execution time of the proposed method is less than the previous one, while maintaining the security. Keywords: McEliece Cryptosystem, RSA, Image Encryption, Image Decryption, Grid
description: Indonesia Journal on Computing (Indo-JC), Vol. 5 No. 3 (2020): December, 2020
Theoretical Description of Coulomb Balls - Fluid Phase
Creators: name: Wrighton, J.
name: Dufty, J. W.
name: Kählert, H.
name: Bonitz, M.
Publisher: name: arXiv
Year: 2009
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: A theoretical description for the radial density profile of a finite number of identical charged particles confined in a harmonic trap is developed for application over a wide range of Coulomb coupling (or, equivalently, temperatures) and particle numbers. A simple mean field approximation neglecting correlations yields a density profile which is monotonically decreasing with radius for all temperatures, in contrast to molecular dynamics simulations and experiments showing shell structure at lower temperatures. A more complete theoretical description including charge correlations is developed here by an extension of the hypernetted chain approximation, developed for bulk fluids, to the confined charges. The results reproduce all of the qualitative features observed in molecular dynamics simulations and experiments. These predictions are then tested quantitatively by comparison with new benchmark Monte Carlo simulations. Quantitative accuracy of the theory is obtained for the selected conditions by correcting the hypernetted chain approximation with a representation for the associated bridge functions.
description: 10 figures, submitted to Physical Review E
Neural mechanisms of risky decision-making and reward response in adolescent onset cannabis use disorder
Creators: name: Yaxley, Richard
name: Wang, Lihong
name: Huettel, Scott
name: Bergman, Sara
name: Hooper, Stephen
name: De Bellis, Michael
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2013

description: Background—Neural mechanisms of decision-making and reward response in adolescent cannabis use disorder (CUD) are underexplored. Methods—Three groups of male adolescents were studied: CUD in full remission (n=15); controls with psychopathology without substance use disorder history(n=23); and healthy controls(n=18). We investigated neural processing of decision-making and reward under conditions of varying risk and uncertainty with the Decision-Reward Uncertainty Task while participants were scanned using functional magnetic resonance imaging. Results—Abstinent adolescents with CUD compared to controls with psychopathology showed hyperactivation in one cluster that spanned left superior parietal lobule/left lateral occipital cortex/precuneus while making risky decisions that involved uncertainty, and hypoactivation in left orbitofrontal cortex to rewarded outcomes compared to no-reward after making risky decisions. Post-hoc region of interest analyses revealed that both control groups significantly differed from the CUD group (but not from each other) during both the decision-making and reward outcome phase of the Decision-Reward Uncertainty Task. In the CUD group, orbitofrontal activations to reward significantly and negatively correlated with total number of individual drug classes the CUD patients experimented with prior to treatment. CUD duration significantly and negatively correlated with orbitofrontal activations to no-reward. Conclusions—The adolescent CUD group demonstrated distinctly different activation patterns during risky decision-making and reward processing (after risky decision-making) compared to both the controls with psychopathology and healthy control groups. These findings suggest that neural differences in risky decision-making and reward processes are present in adolescent addiction, persist after remission from first CUD treatment, and may contribute to vulnerability for adolescent addiction.
Additional file 3 of A consensus-based ensemble approach to improve transcriptome assembly
Creators: name: Voshall, Adam
name: Behera, Sairam
name: Li, Xiangjun
name: Yu, Xiao-Hong
name: Kapil, Kushagra
name: Deogun, Jitender S.
name: Shanklin, John
name: Cahoon, Edgar B.
name: Moriyama, Etsuko N.
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Additional file 3. Supplementary Figures (S1–S4).
RECONMATIC E-nEWSLETTER #1
Creators: name: RECONMATIC Consortium
Publisher: name: Zenodo
Year: 2023

description: RECONMATIC is a European research and innovation project that explores automated solutions for sustainable construction and demolition waste (CDW) management. It focuses on integrated decision-making tools that would help to better identify and minimise waste during the entire lifecycle of a building. The project, funded by EU R&D funding programme Horizon Europe and UK Research and Innovation (UKRI), will create solutions that can be easily adopted by all stakeholders involved in CDW processes. Read our newsletters to learn more about the project and be informed on all our activities!
Lorentz Violation: Motivation and new constraints
Creators: name: Liberati, Stefano
name: Maccione, Luca
Publisher: name: arXiv
Year: 2009
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We review the main theoretical motivations and observational constraints on Planck scale suppressed violations of Lorentz invariance. After introducing the problems related to the phenomenological study of quantum gravitational effects, we discuss the main theoretical frameworks within which possible departures from Lorentz invariance can be described. In particular, we focus on the framework of Effective Field Theory, describing several possible ways of including Lorentz violation therein and discussing their theoretical viability. We review the main low energy effects that are expected in this framework. We discuss the current observational constraints on such a framework, focusing on those achievable through high-energy astrophysics observations. In this context we present a summary of the most recent and strongest constraints on QED with Lorentz violating non-renormalizable operators. Finally, we discuss the present status of the field and its future perspectives.
description: prepared for Annual Review of Nuclear and Particle Science; v3: several references added. v4: DESY report number added