cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Supplementary_file_1 – Supplemental material for Parents’ Experiences and Information Needs While Caring for a Child With Functional Constipation: A Systematic Review
Creators: name: Thompson, Alison P.
name: Wine, Eytan
name: MacDonald, Shannon E.
name: Campbell, Alyson
name: Scott, Shannon D.
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 111403 Paediatrics
subject: FOS: Clinical medicine

description: Supplemental material, Supplementary_file_1 for Parents’ Experiences and Information Needs While Caring for a Child With Functional Constipation: A Systematic Review by Alison P. Thompson, Eytan Wine, Shannon E. MacDonald, Alyson Campbell and Shannon D. Scott in Clinical Pediatrics
title: Literaturrecherche für Dossier Digi EBF 2
Creators: name: Keller, Carolin
name: Rittberger, Marc
Publisher: name: DIPF | Leibniz Institute for Research and Information in Education
Year: 2021

description: Für die fünf Reviews des 2. Bandes aus der Reihe Digitalisierung in der Bildung wurden pro Bildungssektor separate Literaturrecherchen durchgeführt. Die Datenbankauswahl für die Literatursuchen aller Bildungssektoren beinhaltet die Fachdatenbanken FIS Bildung Literaturdatenbank, Education Research Complete (ERC), ERIC (Education Research Information Center), Web of Science - Social Citation Index und LearnTechLib. Die Recherche fand von Januar bis Juli 2020 statt und berücksichtigt Titel, die zwischen 2010 und dem Zeitpunkt der Literaturrecherche erschienen sind. Bei der Durchführung der Recherchen fanden sowohl Suchterme in Englisch als auch in Deutsch Verwendung. Die Suchwörter der jeweiligen Sektoren und Suchkombinationen können in den zur Verfügung gestellten Dokumenten nachvollzogen werden. Die aus der Recherche erstellten Literatursammlungen  stehen als Excel-Tabellen zur Verfügung. Diese beinhalten auch die Angaben, welche Publikationen im Review verwendet wurden (Projekt/DIPF).
Nonlinear Model Predictive Control for Robust Bipedal Locomotion: Exploring Angular Momentum and CoM Height Changes
Creators: name: Ding, Jiatao
name: Zhou, Chengxu
name: Xin, Songyan
name: Xiao, Xiaohui
name: Tsagarakis, Nikos
Publisher: name: arXiv
Year: 2019
Subjects: subject: Robotics (cs.RO)
subject: FOS: Computer and information sciences

description: Human beings can utilize multiple balance strategies, e.g. step location adjustment and angular momentum adaptation, to maintain balance when walking under dynamic disturbances. In this work, we propose a novel Nonlinear Model Predictive Control (NMPC) framework for robust locomotion, with the capabilities of step location adjustment, Center of Mass (CoM) height variation, and angular momentum adaptation. These features are realized by constraining the Zero Moment Point within the support polygon. By using the nonlinear inverted pendulum plus flywheel model, the effects of upper-body rotation and vertical height motion are considered. As a result, the NMPC is formulated as a quadratically constrained quadratic program problem, which is solved fast by sequential quadratic programming. Using this unified framework, robust walking patterns that exploit reactive stepping, body inclination, and CoM height variation are generated based on the state estimation. The adaptability for bipedal walking in multiple scenarios has been demonstrated through simulation studies.
description: 16 pages, 18 figures
Risk Structures: Towards Engineering Risk-aware Autonomous Systems
Creators: name: Gleirscher, Mario
Publisher: name: arXiv
Year: 2019
Subjects: subject: Software Engineering (cs.SE)
subject: Artificial Intelligence (cs.AI)
subject: Robotics (cs.RO)
subject: FOS: Computer and information sciences

description: Inspired by widely-used techniques of causal modelling in risk, failure, and accident analysis, this work discusses a compositional framework for risk modelling. Risk models capture fragments of the space of risky events likely to occur when operating a machine in a given environment. Moreover, one can build such models into machines such as autonomous robots, to equip them with the ability of risk-aware perception, monitoring, decision making, and control. With the notion of a risk factor as the modelling primitive, the framework provides several means to construct and shape risk models. Relational and algebraic properties are investigated and proofs support the validity and consistency of these properties over the corresponding models. Several examples throughout the discussion illustrate the applicability of the concepts. Overall, this work focuses on the qualitative treatment of risk with the outlook of transferring these results to probabilistic refinements of the discussed framework.
Appendix_Table_A1 – Supplemental material for Reduced health-care utilization among people with chronic medical conditions during coronavirus disease 2019
Creators: name: Chetna Malhotra
name: Isha Chaudhry
name: Ozdemir, Semra
name: Finkelstein, Eric Andrew
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 111708 Health and Community Services
subject: FOS: Health sciences
subject: Cardiology
subject: Medicine
subject: 111099 Nursing not elsewhere classified
subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: FOS: Clinical medicine
subject: 111799 Public Health and Health Services not elsewhere classified
subject: 110323 Surgery

description: Supplemental material, Appendix_Table_A1 for Reduced health-care utilization among people with chronic medical conditions during coronavirus disease 2019 by Chetna Malhotra, Isha Chaudhry, Semra Ozdemir and Eric Andrew Finkelstein in Proceedings of Singapore Healthcare
ER-9430_MS_Preg_manuscript_FINAL_supplementary_material_TAND_2020-06-10_FINAL_revised_clean – Supplemental material for Pregnancy outcomes after exposure to interferon beta: a register-based cohort study among women with MS in Finland and Sweden
Creators: name: Hakkarainen, Katja Marja
name: Juuti, Rosa
name: Burkill, Sarah
name: Geissbühler, Yvonne
name: Meritxell Sabidó
name: Popescu, Catrinel
name: Kiliana Suzart-Woischnik
name: Hillert, Jan
name: Artama, Miia
name: Verkkoniemi-Ahola, Auli
name: Kjell-Morten Myhr
name: Mehtälä, Juha
name: Bahmanyar, Shahram
name: Montgomery, Scott
name: Korhonen, Pasi
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified

description: Supplemental material, ER-9430_MS_Preg_manuscript_FINAL_supplementary_material_TAND_2020-06-10_FINAL_revised_clean for Pregnancy outcomes after exposure to interferon beta: a register-based cohort study among women with MS in Finland and Sweden by Katja Marja Hakkarainen, Rosa Juuti, Sarah Burkill, Yvonne Geissbühler, Meritxell Sabidó, Catrinel Popescu, Kiliana Suzart-Woischnik, Jan Hillert, Miia Artama, Auli Verkkoniemi-Ahola, Kjell-Morten Myhr, Juha Mehtälä, Shahram Bahmanyar, Scott Montgomery and Pasi Korhonen in Therapeutic Advances in Neurological Disorders
Uniformly consistent proportion estimation for composite hypotheses via integral equations: "the case of Gamma random variables"
Creators: name: Chen, Xiongzhi
Publisher: name: arXiv
Year: 2019
Subjects: subject: Statistics Theory (math.ST)
subject: Probability (math.PR)
subject: FOS: Mathematics
subject: 62F12, 42A38, 45H05

description: We consider estimating the proportion of random variables for two types of composite null hypotheses: (i) the means of the random variables belonging to a non-empty, bounded interval; (ii) the means of the random variables belonging to an unbounded interval that is not the whole real line. For each type of composite null hypotheses, uniformly consistent estimators of the proportion of false null hypotheses are constructed for random variables whose distributions are members of the Gamma family. Further, uniformly consistent estimators of certain functions of a bounded null on the means are provided for the random variables mentioned earlier. These functions are continuous and of bounded variation. The estimators are constructed via solutions to Lebesgue-Stieltjes integral equations and harmonic analysis, do not rely on a concept of p-value, and have various applications.ce via mixture models, and may be used to estimate the sparsity level in high-dimensional Gaussian linear models.
description: 46 pages; this update contains results only related to Gamma family, with a change in organization (speeds of convergence of discriminant functions are expanded and put into one section, and a section has been added to deal with closed nulls). Results for location-shift family will be put into another paper
Supplement-Updated_(2) – Supplemental material for Researchers’ article sharing through institutional repositories and ResearchGate: A comparison study
Creators: name: Youngseek Kim
name: Jong Sir Oh
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 89999 Information and Computing Sciences not elsewhere classified
subject: FOS: Computer and information sciences

description: Supplemental material, Supplement-Updated_(2) for Researchers’ article sharing through institutional repositories and ResearchGate: A comparison study by Youngseek Kim and Jong Sir Oh in Journal of Librarianship and Information Science
Scientific Statement Classification over arXiv.org
Creators: name: Ginev, Deyan
name: Miller, Bruce R.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computation and Language (cs.CL)
subject: Artificial Intelligence (cs.AI)
subject: Digital Libraries (cs.DL)
subject: FOS: Computer and information sciences

description: We introduce a new classification task for scientific statements and release a large-scale dataset for supervised learning. Our resource is derived from a machine-readable representation of the arXiv.org collection of preprint articles. We explore fifty author-annotated categories and empirically motivate a task design of grouping 10.5 million annotated paragraphs into thirteen classes. We demonstrate that the task setup aligns with known success rates from the state of the art, peaking at a 0.91 F1-score via a BiLSTM encoder-decoder model. Additionally, we introduce a lexeme serialization for mathematical formulas, and observe that context-aware models could improve when also trained on the symbolic modality. Finally, we discuss the limitations of both data and task design, and outline potential directions towards increasingly complex models of scientific discourse, beyond isolated statements.
Supplementary_File_2_Search_Strategy_Medline – Supplemental material for Tools to help healthcare professionals recognize palliative care needs in patients with advanced heart failure: A systematic review
Creators: name: Ament, Stephanie MC
name: Couwenberg, Inge ME
name: Boyne, Josiane JJ
name: Kleijnen, Jos
name: Stoffers, Henri EJH
name: Van Den Beuken, Marieke HJ
name: Engels, Yvonne
name: Bellersen, Louise
name: Janssen, Daisy JA
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 110308 Geriatrics and Gerontology
subject: FOS: Clinical medicine
subject: 111702 Aged Health Care
subject: FOS: Health sciences

description: Supplemental material, Supplementary_File_2_Search_Strategy_Medline for Tools to help healthcare professionals recognize palliative care needs in patients with advanced heart failure: A systematic review by Stephanie MC Ament, Inge ME Couwenberg, Josiane JJ Boyne, Jos Kleijnen, Henri EJH Stoffers, Marieke HJ van den Beuken, Yvonne Engels, Louise Bellersen and Daisy JA Janssen in Palliative Medicine
Introduction To Atlas Case Study 10: Davis Strait, Eastern Arctic
Creators: name: Kenchington, Ellen
Publisher: name: Zenodo
Year: 2016

description: 10. Davis Strait, Eastern Arctic

Introductory presentation given at the 1st ATLAS General Assembly, June 2016.

The Davis Strait joins two oceanic basins, Baffin Bay and the Labrador Sea, and separates western Greenland and Baffin Island. It connects to the Arctic Ocean in the north via the Baffin Bay and to the Atlantic Ocean in the south via the Labrador Sea. It is considered to be the world's largest strait and is renowned for exceptionally strong tides, ranging from 9 to 18 m, and complex hydrography. The shelves extending from both Canada and Greenland typically range between 20 and 100 m in depth and are traversed by deep troughs. At its narrowest point, a ridge or sill up to approximately 600 m depth extends between Greenland (at Holsteinborg, Sisimiut) and Baffin Island (at Cape Dyer). The slopes along the Labrador Sea flank of this ridge and farther south along the Labrador and West Greenland shelves drop to 2500 m or more. On these slopes coral and sponge have been found, including the only known Lophelia pertusa reef in Greenlandic waters. South of Davis Strait the waters off west Greenland support intense phytoplankton blooms in April, which progress northward into the Baffin Bay in May as the seasonal ice-cover retreats. These blooms are characterised by high phytoplankton biomass and a community of grazers dominated by large copepods, i.e. Calanus. Within the study region Calanus provide an important food source for higher trophic levels (e.g. fish, seabirds, whales). In addition, however, they play a key ecological role in supplying the benthic communities with high-quality food via the production of large and fast-sinking faecal pellets. The Baffin Bay and the Davis Strait have the only large-scale commercial fisheries in Canada's Arctic.

Blue Growth Sectors: Biotechnology, Fisheries
Supplemental_Material - Caring for Dying Infants: A Systematic Review of Healthcare Providers’ Perspectives of Neonatal Palliative Care
Creators: name: Susanny J. Beltran
name: Hamel, Marie Nicole
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 111099 Nursing not elsewhere classified
subject: FOS: Health sciences
subject: 111702 Aged Health Care

description: Supplemental_Material for Caring for Dying Infants: A Systematic Review of Healthcare Providers’ Perspectives of Neonatal Palliative Care by Susanny J. Beltran and Marie Nicole Hamel in American Journal of Hospice and Palliative Medicine®
title: The Role of Urban Morphology and Pedestrian Movement in the Perception of Thermal Comfort in Historic City Centres: Spatial Sequences in Rome and London
Creators: name: Vasilikou, Karolina
Publisher: name: University of Kent
Year: 2014

description: Walking in the city affects the sensory realm of the pedestrian. Streets and squares in spatial sequences form a complex environment that enriches the thermal experience of pedestrians in movement. The variations that the latter perceive are not only spatial, but also microclimatic. The impact of microclimatic variations on thermal perception is challenging to measure. In particular, the link between the complexity of spatial sequences, the act of walking and the perception of thermal comfort in dense urban environments has not been studied sufficiently. The present thesis has developed a new methodological tool that helps to fill this gap. This methodology starts from the process of ‘thermal walks’. These consist of a sense-walking technique that analyses the urban climate, the morphology of spaces and the way people perceive their combined effect, through a series of structured walks with simultaneous environmental and human monitoring. This new process is based on point-to-point evaluation of the thermal perception and spatial variation. Its particularity is the combination of objective microclimatic and spatial data with subjective responses by pedestrians at street level. This methodology has been tested on site during fieldwork in the historic core of Rome and London during 2012 and 2013. This made it possible to compare results obtained from two spatial sequences in different climates in the temperate zone. Climatic mapping and design of a questionnaire for thermal walks helped to document the microclimate and variations in its perception. The resulting data was interpreted with statistical analysis and complex graphic representations of thermal variation in each spatial sequence. Findings reveal the role of streets and squares as spatial systems of thermal diversity, and shed light on some unknown characteristics of two of the most successful spatial sequences in Europe. The understanding of the thermal implications of spatial diversity is essential to develop site-specific design guidelines towards an evidence-based practice of sensory urbanism.
Supplemental_Materials - Preclinical Evaluation of a Single Intravenous Infusion of hUC-MSC (BX-U001) in Rheumatoid Arthritis
Creators: name: Linan Liu
name: Farhoodi, Henry P.
name: Menglu Han
name: Guangyang Liu
name: Jingxia Yu
name: Nguyen, Lily
name: Nguyen, Brenda
name: Nguyen, Agnes
name: Wenbin Liao
name: Weian Zhao
Publisher: name: SAGE Journals
Year: 2020
Subjects: Medicine
Cell Biology

description: Supplemental_Materials for Preclinical Evaluation of a Single Intravenous Infusion of hUC-MSC (BX-U001) in Rheumatoid Arthritis by Linan Liu, Henry P. Farhoodi, Menglu Han, Guangyang Liu, Jingxia Yu, Lily Nguyen, Brenda Nguyen, Agnes Nguyen, Wenbin Liao and Weian Zhao in Cell Transplantation
title: Isotopic and proteomic evidence for communal stability at Pre-Pottery Neolithic Jericho in the Southern Levant
Creators: name: Wang, Xiaoran
name: Zhang, Baoshuai
name: Sun, Yufeng
name: Ingman, Tara
name: Eisenmann, Stefanie
name: Lucas, Mary
name: Scott, Erin
name: Ilgner, Jana
name: Wu, Gao
name: Le Roux, Petrus
name: Wu, Xiaotong
name: Zhang, Xingxiang
name: Fan, Anchuan
name: Roberts, Patrick
name: Stockhammer, Philipp W.
Publisher: name: Humboldt-Universität zu Berlin
Year: 2023
Subjects: subject: 930 Geschichte des Altertums bis ca. 499

description: As one of the key, long-term occupied sites in the Southern Levant, Jericho was one of the most important early Neolithic centres to witness social and economic changes associated with the domestication of plants and animals. This study applies strontium ( 87 Sr/ 86 Sr), oxygen (δ 18 O) and carbon (δ 13 C) isotope analyses to the enamel of 52 human teeth from Pre-Pottery Neolithic (PPN) layers of Jericho to directly study human diet and mobility and investigate the degree of consolidation and the flexibility of social organization of Jericho society in the PPN period. The results indicate only two non-local individuals out of the 44 sampled inhabitants identified by strontium isotope analysis and are consistent with the presence of a largely sedentary community at PPN Jericho with no evidence for large-scale migration. We also construct strontium spatial baselines ( 87 Sr/ 86 Sr map) with local 87 Sr/ 86 Sr signatures for the sites across the Southern Levant based on systematic compilation and analysis of available data. In addition, we apply proteomic analysis of sex-specific amelogenin peptides in tooth enamel for sex estimation of the sampled individuals (n = 44), the results of which showed a sex-biased ratio (more male than female detected in this sample pool) in Jericho society during the PPN period, which may be due to the limited sample size or selective ritual practices like particular burial zones used for specific groups. We also pretreated a batch of human bone samples recovered from PPNB Jericho for stable carbon and nitrogen isotope analyses for dietary investigations. However, the extracted collagen showed poor preservation and no valid δ 13 C or δ 15 N data were obtained.
sj-pdf-2-pik-10.1177_1464419320964022 - Supplemental material for Contact force analysis on two-fingered robot grasping
Creators: name: Jiun-Ru Chen
name: Wei-En Chen
name: CH Liu
name: Yin-Tien Wang
name: CB Lin
name: Guan-Chen Chen
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 99999 Engineering not elsewhere classified
subject: FOS: Other engineering and technologies

description: Supplemental material, sj-pdf-2-pik-10.1177_1464419320964022 for Contact force analysis on two-fingered robot grasping by Jiun-Ru Chen, Wei-En Chen, CH Liu, Yin-Tien Wang, CB Lin and Guan-Chen Chen in Proceedings of the Institution of Mechanical Engineers, Part K: Journal of Multi-body Dynamics
title: Automatic identification of crystal structures and interfaces via artificial-intelligence-based electron microscopy
Creators: name: Leitherer, Andreas
name: Yeo, Byung Chul
name: Liebscher, Christian H.
name: Ghiringhelli, Luca M.
Publisher: name: Humboldt-Universität zu Berlin
Year: 2023
Subjects: subject: 620 Ingenieurwissenschaften und zugeordnete Tätigkeiten

description: Characterizing crystal structures and interfaces down to the atomic level is an important step for designing advanced materials. Modern electron microscopy routinely achieves atomic resolution and is capable to resolve complex arrangements of atoms with picometer precision. Here, we present AI-STEM, an automatic, artificial-intelligence based method, for accurately identifying key characteristics from atomic-resolution scanning transmission electron microscopy (STEM) images of polycrystalline materials. The method is based on a Bayesian convolutional neural network (BNN) that is trained only on simulated images. AI-STEM automatically and accurately identifies crystal structure, lattice orientation, and location of interface regions in synthetic and experimental images. The model is trained on cubic and hexagonal crystal structures, yielding classifications and uncertainty estimates, while no explicit information on structural patterns at the interfaces is included during training. This work combines principles from probabilistic modeling, deep learning, and information theory, enabling automatic analysis of experimental, atomic-resolution images.
sj-pdf-4-pik-10.1177_1464419320964022 - Supplemental material for Contact force analysis on two-fingered robot grasping
Creators: name: Jiun-Ru Chen
name: Wei-En Chen
name: CH Liu
name: Yin-Tien Wang
name: CB Lin
name: Guan-Chen Chen
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 99999 Engineering not elsewhere classified
subject: FOS: Other engineering and technologies

description: Supplemental material, sj-pdf-4-pik-10.1177_1464419320964022 for Contact force analysis on two-fingered robot grasping by Jiun-Ru Chen, Wei-En Chen, CH Liu, Yin-Tien Wang, CB Lin and Guan-Chen Chen in Proceedings of the Institution of Mechanical Engineers, Part K: Journal of Multi-body Dynamics
sj-pdf-1-pie-10.1177_0954408920966301 - Supplemental material for Characterization of MWCNTs-polystyrene nanocomposite based strain sensor
Creators: name: Singla, Tarun
name: Amrinder Pal Singh
name: Kumar, Suresh
name: Gagandeep Singh
name: Kumar, Navin
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 99999 Engineering not elsewhere classified
subject: FOS: Other engineering and technologies
subject: 91299 Materials Engineering not elsewhere classified
subject: FOS: Materials engineering

description: Supplemental material, sj-pdf-1-pie-10.1177_0954408920966301 for Characterization of MWCNTs-polystyrene nanocomposite based strain sensor by Tarun Singla, Amrinder Pal Singh, Suresh Kumar, Gagandeep Singh and Navin Kumar in Proceedings of the Institution of Mechanical Engineers, Part E: Journal of Process Mechanical Engineering
title: A versatile regulatory toolkit of arabinose-inducible artificial transcription factors for Enterobacteriaceae
Creators: name: Naseri, Gita
name: Raasch, Hannah
name: Charpentier, Emmanuelle
name: Erhardt, Marc
Publisher: name: Humboldt-Universität zu Berlin
Year: 2023
Subjects: subject: 570 Biologie

description: The Gram-negative bacteria Salmonella enterica and Escherichia coli are important model organisms, powerful prokaryotic expression platforms for biotechnological applications, and pathogenic strains constitute major public health threats. To facilitate new approaches for research and biotechnological applications, we here develop a set of arabinose-inducible artificial transcription factors (ATFs) using CRISPR/dCas9 and Arabidopsis -derived DNA-binding proteins to control gene expression in E. coli and Salmonella over a wide inducer concentration range. The transcriptional output of the different ATFs, in particular when expressed in Salmonella rewired for arabinose catabolism, varies over a wide spectrum (up to 35-fold gene activation). As a proof-of-concept, we use the developed ATFs to engineer a Salmonella two-input biosensor strain, SALSOR 0.2 (SALmonella biosenSOR 0.2), which detects and quantifies alkaloid drugs through a measurable fluorescent output. Moreover, we use plant-derived ATFs to regulate β-carotene biosynthesis in E. coli , resulting in ~2.1-fold higher β-carotene production compared to expression of the biosynthesis pathway using a strong constitutive promoter.
sj-pdf-2-pie-10.1177_0954408920961195 - Supplemental material for Experimental investigation into the bending energy absorption of hybrid aluminum/high strength and mild steel thin-walled sections joined by clinching
Creators: name: Abolfazl Khalkhali
name: Elyar Miandoabchi
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 99999 Engineering not elsewhere classified
subject: FOS: Other engineering and technologies
subject: 91299 Materials Engineering not elsewhere classified
subject: FOS: Materials engineering

description: Supplemental material, sj-pdf-2-pie-10.1177_0954408920961195 for Experimental investigation into the bending energy absorption of hybrid aluminum/high strength and mild steel thin-walled sections joined by clinching by Abolfazl Khalkhali and Elyar Miandoabchi in Journal of Process Mechanical Engineering
Figure S6 - Supplemental material for Detecting and Responding to Information Overload With an Adaptive User Interface
Creators: name: Kortschot, Sean W.
name: Jamieson, Greg A.
name: Prasad, Amrit
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 99999 Engineering not elsewhere classified
subject: FOS: Other engineering and technologies
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology

description: Supplemental material, Figure S6, for Detecting and Responding to Information Overload With an Adaptive User Interface by Sean W. Kortschot, Greg A. Jamieson and Amrit Prasad in Human Factors: The Journal of Human Factors and Ergonomics Society
Supplemental Material, Combined_supplemental_materials-Kaji_et_al - Protease-Activated Receptor-2 Is Associated With Adverse Outcomes in Canine Mammary Carcinoma
Creators: name: Kaji, Kenjiro
name: Kaji, Noriyuki
name: Hori, Masatoshi
name: Kosei Sakai
name: Yonezawa, Tomohiro
name: Maeda, Shingo
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified
subject: FOS: Clinical medicine
subject: 70706 Veterinary Medicine
subject: FOS: Veterinary sciences

description: Supplemental Material, Combined_supplemental_materials-Kaji_et_al for Protease-Activated Receptor-2 Is Associated With Adverse Outcomes in Canine Mammary Carcinoma by Kenjiro Kaji, Noriyuki Kaji, Masatoshi Hori, Kosei Sakai, Tomohiro Yonezawa and Shingo Maeda in Veterinary Pathology
Supplement_Figure_S1 – Supplemental material for A systematic review of the effect of omega-3 supplements on meibomian gland dysfunction
Creators: name: Mashael Al-Namaeh
Publisher: name: SAGE Journals
Year: 2020
Subjects: Medicine

description: Supplemental material, Supplement_Figure_S1 for A systematic review of the effect of omega-3 supplements on meibomian gland dysfunction by Mashael Al-Namaeh in Therapeutic Advances in Ophthalmology
sj-pdf-1-mso-10.1177_2055217320964940 - Supplemental material for The feasibility of assessing cognitive and motor function in multiple sclerosis patients using robotics
Creators: name: Simmatis, Leif ER
name: Jin, Albert Y
name: Taylor, Sean W
name: Bisson, Etienne J
name: Scott, Stephen H
name: Moogeh Baharnoori
Publisher: name: SAGE Journals
Year: 2020
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: Neuroscience

description: Supplemental material, sj-pdf-1-mso-10.1177_2055217320964940 for The feasibility of assessing cognitive and motor function in multiple sclerosis patients using robotics by Leif ER Simmatis, Albert Y Jin, Sean W Taylor, Etienne J Bisson, Stephen H Scott and Moogeh Baharnoori in Multiple Sclerosis Journal – Experimental, Translational and Clinical
00f8b8c046636_EvoBioRevSupplTable5y_xyz466362fa485fb – Supplemental material for Vesicle Transport in Plants: A Revised Phylogeny of SNARE Proteins
Creators: name: Xiaoyan Gu
name: Brennan, Adrian
name: Wenbin Wei
name: Guangqin Guo
name: Lindsey, Keith
Publisher: name: SAGE Journals
Year: 2020
Subjects: Cell Biology

description: Supplemental material, 00f8b8c046636_EvoBioRevSupplTable5y_xyz466362fa485fb for Vesicle Transport in Plants: A Revised Phylogeny of SNARE Proteins by Xiaoyan Gu, Adrian Brennan, Wenbin Wei, Guangqin Guo and Keith Lindsey in Evolutionary Bioinformatics
title: HDLBP binds ER-targeted mRNAs by multivalent interactions to promote protein synthesis of transmembrane and secreted proteins
Creators: name: Zinnall, Ulrike
name: Milek, Miha
name: Minia, Igor
name: Vieira-Vieira, Carlos H.
name: Müller, Simon
name: Mastrobuoni, Guido
name: Hazapis, Orsalia-Georgia
name: Del Giudice, Simone
name: Schwefel, David
name: Bley, Nadine
name: Voigt, Franka
name: Chao, Jeffrey A.
name: Kempa, Stefan
name: Hüttelmaier, Stefan
name: Selbach, Matthias
name: Landthaler, Markus
Publisher: name: Humboldt-Universität zu Berlin
Year: 2022
Subjects: subject: Cancer
subject: Endoplasmic reticulum
subject: RNA
subject: Translation
subject: 610 Medizin und Gesundheit

description: The biological role of RNA-binding proteins in the secretory pathway is not well established. Here, we describe that human HDLBP/Vigilin directly interacts with more than 80% of ER-localized mRNAs. PAR-CLIP analysis reveals that these transcripts represent high affinity HDLBP substrates and are specifically bound in their coding sequences (CDS), in contrast to CDS/3’UTR-bound cytosolic mRNAs. HDLBP crosslinks strongly to long CU-rich motifs, which frequently reside in CDS of ER-localized mRNAs and result in high affinity multivalent interactions. In addition to HDLBP-ncRNA interactome, quantification of HDLBP-proximal proteome confirms association with components of the translational apparatus and the signal recognition particle. Absence of HDLBP results in decreased translation efficiency of HDLBP target mRNAs, impaired protein synthesis and secretion in model cell lines, as well as decreased tumor growth in a lung cancer mouse model. These results highlight a general function for HDLBP in the translation of ER-localized mRNAs and its relevance for tumor progression.
The QARMA Block Cipher Family. Almost MDS Matrices Over Rings With Zero Divisors, Nearly Symmetric Even-Mansour Constructions With Non-Involutory Central Rounds, and Search Heuristics for Low-Latency S-Boxes
Creators: name: Avanzi, Roberto
Publisher: name: International Association for Cryptologic Research
Year: 2017
Subjects: Tweakable Block Ciphers; Reflection Ciphers; Even-Mansour Schemes; Almost MDS Matrices; S-Box Search Heuristics; Memory Encryption; Pointer Authentication; Short Hashes; Tweak Masking; Tweak Extension

description: This paper introduces QARMA, a new family of lightweight tweakable block ciphers targeted at applications such as memory encryption, the generation of very short tags for hardware-assisted prevention of software exploitation, and the construction of keyed hash functions. QARMA is inspired by reflection ciphers such as PRINCE, to which it adds a tweaking input, and MANTIS. However, QARMA differs from previous reflector constructions in that it is a three-round Even-Mansour scheme instead of a FX-construction, and its middle permutation is non-involutory and keyed. We introduce and analyse a family of Almost MDS matrices defined over a ring with zero divisors that allows us to encode rotations in its operation while maintaining the minimal latency associated to {0, 1}-matrices. The purpose of all these design choices is to harden the cipher against various classes of attacks. We also describe new S-Box search heuristics aimed at minimising the critical path. QARMA exists in 64- and 128-bit block sizes, where block and tweak size are equal, and keys are twice as long as the blocks. We argue that QARMA provides sufficient security margins within the constraints determined by the mentioned applications, while still achieving best-in-class latency. Implementation results on a state-of-the art manufacturing process are reported. Finally, we propose a technique to extend the length of the tweak by using, for instance, a universal hash function, which can also be used to strengthen the security of QARMA.
description: IACR Transactions on Symmetric Cryptology, Volume 2017, Issue 1
Hepatogaster Cejka 1910
Creators: name: Rota, Emilia
name: Martinsson, Svante
name: Erséus, Christer
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Clitellata
Enchytraeida
Enchytraeidae
Hepatogaster

description: Status of Hepatogaster Cejka, 1910
 We compared the genetic sequences of our two new Siberian species and the unnamed species A, all sharing the Hepatogaster -like condition of gut diverticula, with those of H. magnampullacea recently described from Korea and stated to possess a “multitubular substructure” (Dózsa-Farkas et al. 2015) and also with sequences of H. ochracea provided by the same authors, and we found no close affinity. Admittedly, the position of H. magnampullacea is not clear, as the authors likened the substructure of its diverticula to that “characterizing” H. ventriculosa, H. jutlandica, and H. groenlandica. In any case, by considering also the other Henlea species includ- ed in our analysis, the molecular phylogeny seems to support a transition from smoother diverticula walls via more folded to the tubuliferous condition of Hepatogaster as previously suggested, instead of a sister-group relationship between Hepatogaster and other Henlea species. Actually, Hepatogaster would seem to be an artificial grouping of taxa showing similar modifications by convergence (polyphyletic grade). The question whether the tubuliferous condition is a plesiomorphy (as suggested by Tynen et al. 1991, based on “very preliminary outgroup comparisons”) or a derived condition with respect to smoother diverticula needs more data to be resolved with full support. According to our estimated phylogeny the tubuliferous condition is apomorphic, and has evolved more than once, but our phylogeny is just a start: as we tried to maximize the number of species included, we have limited gene coverage of some. This probably explains the low support in our tree. The low gene coverage may also be the explanation for not recovering Henlea as monophyletic. Further, for our phylogeny we only sampled 13 of the over 30 accepted species of Henlea (Schmelz and Collado 2012).
description: Published as part of Rota, Emilia, Martinsson, Svante & Erséus, Christer, 2018, Two new bioluminescent Henlea from Siberia and lack of molecular support for Hepatogaster (Annelida, Clitellata, Enchytraeidae), pp. 291-312 in Organisms Diversity & Evolution (New York, N. Y.) (New York, N. Y.) 18 (3) on page 309, DOI: 10.1007/s13127-018-0374-6, http://zenodo.org/record/13321803
LIZARD – A Lightweight Stream Cipher for Power-constrained Devices
Creators: name: Hamann, Matthias
name: Krause, Matthias
name: Meier, Willi
Publisher: name: International Association for Cryptologic Research
Year: 2017
Subjects: Stream Ciphers; Lightweight Cryptography; Time-Memory-Data Tradeoff Attacks; FP(1)-mode; Grain; RFID

description: Time-memory-data (TMD) tradeoff attacks limit the security level of many classical stream ciphers (like E0, A5/1, Trivium, Grain) to 1/2n, where n denotes the inner state length of the underlying keystream generator. In this paper, we present Lizard, a lightweight stream cipher for power-constrained devices like passive RFID tags. Its hardware efficiency results from combining a Grain-like design with the FP(1)-mode, a recently suggested construction principle for the state initialization of stream ciphers, which offers provable 2/3n-security against TMD tradeoff attacks aiming at key recovery. Lizard uses 120-bit keys, 64-bit IVs and has an inner state length of 121 bit. It is supposed to provide 80-bit security against key recovery attacks. Lizard allows to generate up to 218 keystream bits per key/IV pair, which would be sufficient for many existing communication scenarios like Bluetooth, WLAN or HTTPS.
description: IACR Transactions on Symmetric Cryptology, Volume 2017, Issue 1
Supplemental Material1 - Supplemental material for Prospective severity classification of scientific procedures in cephalopods: Report of a COST FA1301 Working Group survey
Creators: name: Cooke, Gavan M
name: Anderson, David B
name: Marie-Laure Begout
name: Ngaire Dennison
name: Osorio, Daniel
name: Tonkins, Belinda
name: Kristiansen, Tore
name: Fiorito, Graziano
name: Galligioni, Viola
name: Ponte, Giovanna
name: Andrews, Paul LR
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 70706 Veterinary Medicine
subject: FOS: Veterinary sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Supplemental material, Supplemental Material1 for Prospective severity classification of scientific procedures in cephalopods: Report of a COST FA1301 Working Group survey by Gavan M Cooke, David B Anderson, Marie-Laure Begout, Ngaire Dennison, Daniel Osorio, Belinda Tonkins, Tore Kristiansen, Graziano Fiorito, Viola Galligioni, Giovanna Ponte and Paul LR Andrews in Laboratory Animals
Introduction To Atlas Case Study 11: Flemish Cap
Creators: name: Muñoz, Pablo Duran
Publisher: name: Zenodo
Year: 2016

description: 11. Flemish Cap

Introductory presentation given at the 1st ATLAS General Assembly, June 2016.

Flemish Cap is an Oceanic Bank located in an Area Beyond National Jurisdiction within the Northwest Atlantic Fisheries Organisation Regulatory Area (NAFO) and separated from the Grand Banks by the Flemish Pass. It is situated in a transition area between the cold-waters of the Labrador Current and warmer waters influenced by the Gulf Stream. It is mainly covered with soft sediments and there are stones scattered in the entire area. The main focal ecosystems are sponge grounds and cold-water corals.

The Flemish Cap includes important international fishing grounds and has the potential to become an important zone for oil, gas and bioprospecting. Current NAFO enforcement and conservation measures include catch and effort limitations, fisheries footprint, VMS, observers and closed areas to protect VMEs.

Blue Growth Sectors: Biotechnology, Fisheries, Oil and Gas.
Digitization Initiatives Committee Charter
Creators: name: Pike, Robin C.
name: Archer, Joanne
name: Foss, Heather
name: Harrington, Eileen
name: Montori, Carla
Publisher: name: Digital Repository at the University of Maryland
Year: 2013
Subjects: digitization
digital collections
project management

description: This is the charter of the Digitization Initiatives Committee (DIC) of the University of Maryland Libraries. The committee was established “to collect and document proposed outsourced digitization projects across the UMD Libraries, match these projects with available or proposed fiscal resources, and prioritize the projects...based on available fiscal resources, Libraries strategic initiatives, division priorities, and available staff resources for the specific projects.”
title: Design of Multivariable Feedback Control Systems Via Spectral Assignment
Creators: name: Marefat, Mohsen
Publisher: name: Old Dominion University
publisherIdentifier: https://ror.org/04zjtrb98
publisherIdentifierScheme: ROR
Year: 1985

description: During the past 15 year s significant advances have been made towards developing viable synthesis- techniques for multivariable feedback control systems. The entire aggregate of this theoretical work has been reviewed and consolidated. Diverse notations have been standardized into a single system. A two-step design philosophy for spectral assignment has been developed which first meets stability and time response requirements by assigning eigenvalues and eigenvector s and then provides for attainment of secondary objectives without significant deviation from the initial assignment. Finally, a computer-aided design package has been created to streamline the process of mathematical calculation and to allow users unfamiliar with the mathematics of spectral assignment to develop effective multivariable designs.
Control Barrier Function based Quadratic Programs Introduce Undesirable Asymptotically Stable Equilibria
Creators: name: Reis, Matheus F.
name: Aguiar, A. Pedro
name: Tabuada, Paulo
Publisher: name: arXiv
Year: 2020
Subjects: subject: Systems and Control (eess.SY)
subject: Optimization and Control (math.OC)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Mathematics

description: Control Lyapunov functions (CLFs) and control barrier functions (CBFs) have been used to develop provably safe controllers by means of quadratic programs (QPs), guaranteeing safety in the form of trajectory invariance with respect to a given set. In this manuscript, we show that this framework can introduce equilibrium points (particularly at the boundary of the unsafe set) other than the minimum of the Lyapunov function into the closed-loop system. We derive explicit conditions under which these undesired equilibria (which can even appear in the simple case of linear systems with just one convex unsafe set) are asymptotically stable. To address this issue, we propose an extension to the QP-based controller unifying CLFs and CBFs that explicitly avoids undesirable equilibria on the boundary of the safe set. The solution is illustrated in the design of a collision-free controller.
description: 6 pages, 4 figures, submitted to the 59th Conference on Decision and Control
Introduction To Atlas Case Study 12: Canyon Provence, Middle Us Atlantic Bight
Creators: name: Lea-Anne Henry
name: Ross, Steve
Publisher: name: Zenodo
Year: 2016

description: 12. Mid-Atlantic Canyons

Introductory presentation given at the 1st ATLAS General Assembly, June 2016.

The western North Atlantic Ocean between Cape Hatteras and Cape Cod (USA, Middle Atlantic Bight, MAB) is characterised by numerous and diverse submarine canyons that straddle the outer shelf and slope. Research interests in these canyons and associated ecosystems have increased in the last 20 years, largely in response to potential energy exploration and development. This ATLAS case study focuses on the area between Baltimore Canyon and Cape Hatteras, but  also draws on relevant data from recent studies on the Blake Plateau off the southeastern US. This area represents a unique transition from the rocky and carbonate bottom Blake Plateau that is oceanographically dominated by the Gulf Stream to the softer sediment, canyon dominated area north of Cape Hatteras, influenced by colder currents.

Extensive recent studies in and around Baltimore and Norfolk canyons revealed that the physical environment in the canyons was different from that on the open slope, that it varied over relatively small spatial scales, and that the oceanography and geology have great influence on the character of the benthic community, especially sessile invertebrates (corals, sponges, infauna). These canyons provided extensive rugged, hard substrata habitats that supported diverse deep-sea coral communities, although most of the mobile fauna was influenced by habitat structure and not presence or absence of corals. Newly discovered methane seeps in this area also supported both chemosynthetic communities and a variety of other organisms drawn to habitat structure derived from the seeps. In addition to habitat attributes, depth was a major factor structuring communities in and around the canyons.

Anthropogenic impacts (trash, discarded fishing gear, etc.) were widely observed, especially near the heads of Baltimore and Norfolk canyons. Even so, the rugged canyon and seep habitats provided refuge for a number of exploited species (e.g., American lobster, squids, cusk [tusk], sharks). Because of the high productivity, fragile habitats, presence of corals, and vulnerability to impact, the MAB canyons and surroundings were recently given protected area status by  US agencies.

Blue Growth Sectors:  Biotechnology, Fisheries, Mining, Oil and Gas
High-order accurate entropy stable finite difference schemes for the shallow water magnetohydrodynamics
Creators: name: Duan, Junming
name: Tang, Huazhong
Publisher: name: arXiv
Year: 2020
Subjects: subject: Numerical Analysis (math.NA)
subject: FOS: Mathematics

description: This paper develops the high-order accurate entropy stable (ES) finite difference schemes for the shallow water magnetohydrodynamic (SWMHD) equations.They are built on the numerical approximation of the modified SWMHD equations with the Janhunen source term. First, the second-order accurate well-balanced semi-discrete entropy conservative (EC) schemes are constructed, satisfying the entropy identity for the given convex entropy function and preserving the steady states of the lake at rest (with zero magnetic field). The key is to match both discretizations for the fluxes and the non-flat river bed bottom and Janhunen source terms, and to find the affordable EC fluxes of the second-order EC schemes. Next, by using the second-order EC schemes as building block, high-order accurate well-balanced semi-discrete EC schemes are proposed. Then, the high-order accurate well-balanced semi-discrete ES schemes %satisfying the entropy inequality are derived by adding a suitable dissipation term to the EC scheme with the WENO reconstruction of the scaled entropy variables in order to suppress the numerical oscillations of the EC schemes. After that, the semi-discrete schemes are integrated in time by using the high-order strong stability preserving explicit Runge-Kutta schemes to obtain the fully-discrete high-order well-balanced schemes. The ES property of the Lax-Friedrichs flux is also proved and then the positivity-preserving ES schemes are studied by using the positivity-preserving flux limiter. Finally, extensive numerical tests are conducted to validate the accuracy, the well-balanced, ES and positivity-preserving properties, and the ability to capture discontinuities of our schemes.
description: 41 pages, 10 figures
Towards Deductive Verification of Control Algorithms for Autonomous Marine Vehicles
Creators: name: Foster, Simon
name: Gleirscher, Mario
name: Calinescu, Radu
Publisher: name: arXiv
Year: 2020
Subjects: subject: Software Engineering (cs.SE)
subject: Systems and Control (eess.SY)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: The use of autonomous vehicles in real-world applications is often precluded by the difficulty of providing safety guarantees for their complex controllers. The simulation-based testing of these controllers cannot deliver sufficient safety guarantees, and the use of formal verification is very challenging due to the hybrid nature of the autonomous vehicles. Our work-in-progress paper introduces a formal verification approach that addresses this challenge by integrating the numerical computation of such a system (in GNU/Octave) with its hybrid system verification by means of a proof assistant (Isabelle). To show the effectiveness of our approach, we use it to verify differential invariants of an Autonomous Marine Vehicle with a controller switching between multiple modes.