cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
MOESM5 of The complete mitochondrial genome of Taxus cuspidata (Taxaceae): eight protein-coding genes have transferred to the nuclear genome
Creators: name: Kan, Sheng-Long
name: Shen, Ting-Ting
name: Gong, Ping
name: Ran, Jin-Hua
name: Wang, Xiao-Quan
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 5: Figure S3. GC content variation in the protein-coding genes of the sampled species. (A) All codon positions; (B) the first codon position; (C) the second codon position; (D) the third codon position.
1D Exciton Spectroscopy of Semiconductor Nanorods
Creators: name: Shabaev, A.
name: Efros, Al. L.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We have theoretically shown that optical properties of semiconductor nanorods are controlled by 1D excitons. The theory, which takes into account anisotropy of spacial and dielectric confinement, describes size dependence of interband optical transitions, exciton binding energies. We have demonstrated that the fine structure of the ground exciton state explains the linear polarization of photoluminescence. Our results are in good agreement with the measurements in CdSe nanorods.
Nanoengineering room temperature ferroelectricity into orthorhombic SmMnO 3 films
Creators: name: Choi, Eun-Mi
name: Maity, Tuhin
name: Kursumovic, Ahmed
name: Lu, Ping
name: Bi, Zenxhing
name: Yu, Shukai
name: Park, Yoonsang
name: Zhu, Bonan
name: Wu, Rui
name: Gopalan, Venkatraman
name: Wang, Haiyan
name: MacManus-Driscoll, Judith L.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article
/639/301
/639/301/119
/639/301/119/996
/128
/132
/145
/147/3
/147/143
/147/137
/120
article

description: Abstract: Orthorhombic RMnO3 (R = rare-earth cation) compounds are type-II multiferroics induced by inversion-symmetry-breaking of spin order. They hold promise for magneto-electric devices. However, no spontaneous room-temperature ferroic property has been observed to date in orthorhombic RMnO3. Here, using 3D straining in nanocomposite films of (SmMnO3)0.5((Bi,Sm)2O3)0.5, we demonstrate room temperature ferroelectricity and ferromagnetism with TC,FM ~ 90 K, matching exactly with theoretical predictions for the induced strain levels. Large in-plane compressive and out-of-plane tensile strains (−3.6% and +4.9%, respectively) were induced by the stiff (Bi,Sm)2O3 nanopillars embedded. The room temperature electric polarization is comparable to other spin-driven ferroelectric RMnO3 films. Also, while bulk SmMnO3 is antiferromagnetic, ferromagnetism was induced in the composite films. The Mn-O bond angles and lengths determined from density functional theory explain the origin of the ferroelectricity, i.e. modification of the exchange coupling. Our structural tuning method gives a route to designing multiferroics.
Concept and Realization of a Novel Test Method Using a Dynamic Test Stand for Detecting Persons by Sensor Systems on Autonomous Agricultural Robotics
Creators: name: Meltebrink, Christian
name: Ströer, Tom
name: Wegmann, Benjamin
name: Weltzien, Cornelia
name: Ruckelshausen, Arno
Publisher: name: Technische Universität Berlin
Year: 2021
Subjects: subject: 620 Ingenieurwissenschaften und zugeordnete Tätigkeiten
subject: image-based sensor systems
subject: object detection systems
subject: safety of autonomous agriculture machines
subject: test stand
subject: humanoid test target

description: As an essential part for the development of autonomous agricultural robotics, the functional safety of autonomous agricultural machines is largely based on the functionality and robustness of non-contact sensor systems for human protection. This article presents a new step in the development of autonomous agricultural machine with a concept and the realization of a novel test method using a dynamic test stand on an agricultural farm in outdoor areas. With this test method, commercially available sensor systems are tested in a long-term test around the clock for 365 days a year and 24 h a day on a dynamic test stand in continuous outdoor use. A test over a longer period of time is needed to test as much as possible all occurring environmental conditions. This test is determined by the naturally occurring environmental conditions. This fact corresponds to the reality of unpredictable/determinable environmental conditions in the field and makes the test method and test stand so unique. The focus of the developed test methods is on creating own real environment detection areas (REDAs) for each sensor system, which can be used to compare and evaluate the autonomous human detection of the sensor systems for the functional safety of autonomous agricultural robots with a humanoid test target. Sensor manufacturers from industry and the automotive sector provide their sensor systems to have their sensors tested in cooperation with the TÜV.
Presentist History for Pluralist Science
Creators: name: Chang, Hasok
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article
Pluralism
Presentism
Whiggism
Complementary science
Experimental replications

description: Abstract: Building on my previous writings on presentism, pluralism, and “complementary science”, I develop an activist view of historiography. I begin by recognizing the inevitability of presentism. Our own purposes and perspectives do and should guide the production of our accounts of the past; like funerals, history-writing is for the living. There are different kinds of presentist history, depending on the historians’ purposes and perspectives. My particular inclination is pluralist. Science remembers its own history from a particular perspective (“whiggism”), which views the past as imperfect versions of the present; if professional historians of science shared this perspective, our work would be redundant. Instead, we can make it our task to illuminate the aspects of the past of science that scientists themselves tend to ignore and forget. History of science can also take a more productive role in the creation and improvement of scientific knowledge. Scientific progress as we know it tends to involve the shutting down of alternative paths of inquiry, resulting in a loss of potential and actual knowledge. A critical and sympathetic engagement with the past allows us to recover the lost paths, which can also suggest new paths. These points will be illustrated by a number of examples, especially from the history of chemistry and physics, including the recovery and extension of past experiments.
Some Attacks On Quantum-based Cryptographic Protocols
Creators: name: Lo, Hoi-Kwong
name: Ko, Tsz-Mei
Publisher: name: arXiv
Year: 2003
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Quantum-based cryptographic protocols are often said to enjoy security guaranteed by the fundamental laws of physics. However, even carefully designed quantum-based cryptographic schemes may be susceptible to subtle attacks that are outside the original design. As an example, we give attacks against a recently proposed ``secure communication using mesoscopic coherent states'', which employs mesoscopic states, rather than single-photon states. Our attacks can be used either as a known-plaintext attack or in the case where the plaintext has not been randomized. One of our attacks requires beamsplitters and the replacement of a lossy channel by a lossless one. It is successful provided that the original loss in the channel is so big that Eve can obtain 2^k copies of what Bob receives, where k is the length of the seed key pre-shared by Alice and Bob. Substantial improvements over such an exhaustive key search attack can be made, whenever a key is reused. Furthermore, we remark that, under the same assumption of a known or non-random plaintext, Grover's exhaustive key search attack can be applied directly to "secure communication using mesoscopic coherent states", whenever the channel loss is more than 50 percent. Therefore, as far as information-theoretic security is concerned, optically amplified signals necessarily degrade the security of the proposed scheme, when the plaintext is known or non-random. Our attacks apply even if the mesoscopic scheme is used only for key generation with a subsequent use of the key for one-time-pad encryption.
description: Replaced with revised version. 8 pages. No figure. Abstract truncated because of the 24-line limit in quant-ph
Freyastera sexradiata
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Brisingida
Freyellidae
Freyastera
Freyastera sexradiata

description: sexradiata Perrier, 1885, Freyella
Freyella sexradiata Perrier, 1885: 6; 1894: 89, pl. 3, fig. 2a-c.
Freyastera sexradiata ‒ Clark & Downey 1992: 481.
CURRENT STATUS. — Freyastera sexradiata (Perrier, 1885).
TYPE MATERIAL. — Atlantic Ocean • holotype; station 134; Talisman expedition; 1883; 42°19’N, 23°36’W; depth 4060 m; MNHN- IE-2014-165.
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on page 316, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
Additional file 9 of Using synthetic chromosome controls to evaluate the sequencing of difficult regions within the human genome
Creators: name: Reis, Andre L. M.
name: Deveson, Ira W.
name: Madala, Bindu Swapna
name: Wong, Ted
name: Barker, Chris
name: Xu, Joshua
name: Lennon, Niall
name: Tong, Weida
name: Mercer, Tim R.
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 9. Review history.
SWI/SNF subunit BAF155 N-terminus structure informs the impact of cancer-associated mutations and reveals a potential drug binding site
Creators: name: Allen, Mark D.
name: Freund, Stefan M. V.
name: Bycroft, Mark
name: Zinzalla, Giovanna
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Article
/631/535/1266
/631/67/1059
/101/6
/82/83
/82/80
article

description: Abstract: SWI/SNF (BAF) chromatin remodelling complexes are key regulators of gene expression programs, and attractive drug targets for cancer therapies. Here we show that the N-terminus of the BAF155/SMARCC1 subunit contains a putative DNA-binding MarR-like domain, a chromodomain and a BRCT domain that are interconnected to each other to form a distinct module. In this structure the chromodomain makes interdomain interactions and has lost its canonical function to bind to methylated lysines. The structure provides new insights into the missense mutations that target this module in cancer. This study also reveals two adjacent, highly-conserved pockets in a cleft between the domains that form a potential binding site, which can be targeted with small molecules, offering a new strategy to target SWI/SNF complexes.
Laser cooling with ultrafast pulse trains
Creators: name: Kielpinski, David
Publisher: name: arXiv
Year: 2003
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We propose a new laser cooling method for atomic species whose level structure makes traditional laser cooling difficult. For instance, laser cooling of hydrogen requires vacuum-ultraviolet laser light, while multielectron atoms need laser light at many widely separated frequencies. These restrictions can be eased by laser cooling on two-photon transitions with ultrafast pulse trains. Laser cooling of hydrogen, antihydrogen, and carbon appears feasible, and extension of the technique to molecules may be possible.
description: submitted
MOESM6 of The complete mitochondrial genome of Taxus cuspidata (Taxaceae): eight protein-coding genes have transferred to the nuclear genome
Creators: name: Kan, Sheng-Long
name: Shen, Ting-Ting
name: Gong, Ping
name: Ran, Jin-Hua
name: Wang, Xiao-Quan
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 6: Figure S4. Length variation in cis-spliced introns of the selected plant mitogenomes.
Spectroscopic characterization of nine binary star systems as well as HIP107136 and HIP107533
Creators: name: Heyne, T.
name: Mugrauer, M.
name: Bischoff, R.
name: Wagner, D.
name: Hoffmann, S.
name: Lux, O.
name: Munz, V.
name: Geymeier, M.
name: Neuhäuser, R.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: We present the results of our 2nd radial velocity monitoring campaign, carried out with the Échelle spectrograph FLECHAS at the University Observatory Jena in the course of the Großschwabhausen binary survey between December 2016 and June 2018. The aim of this project is to obtain precise radial velocity measurements for spectroscopic binary stars in order to redetermine, verify, improve and constrain their Keplerian orbital solutions. In this paper we describe the observations, data reduction and analysis and present the results of this project. In total, we have taken 721 RV measurements of 11 stars and derived well determined orbital solutions for 9 systems (7 single-, and 2 double-lined spectroscopic binaries) with periods in the range between 2 and 70 days. In addition, we could rule out the orbital solutions for the previously classified spectroscopic binary systems HIP107136 and HIP107533, whose radial velocities are found to be constant on the km/s-level over a span of time of more than 500 days. In the case of HIP2225 a significant change of its systematic velocity is detected between our individual observing epochs, indicating the presence of an additional companion, which is located on a wider orbit in this system.
description: accepted for publication in AN, 16 pages, 5 figures, 16 tables
title: "AIDS therapy, a new edge"
Creators: name: Leibowitch, Jacques
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020

description: Source: http://www.calames.abes.fr/pub/ms/Calames-20193111232830332
description: created: start=1975;end=2018
Autophosphorylation and the Dynamics of the Activation of Lck
Creators: name: Kreusser, Lisa Maria
name: Rendall, Alan D.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Original Article
Src kinase
Bifurcation
Phosphorylation
Dynamics
T cells

description: Abstract: Lck (lymphocyte-specific protein tyrosine kinase) is an enzyme which plays a number of important roles in the function of immune cells. It belongs to the Src family of kinases which are known to undergo autophosphorylation. It turns out that this leads to a remarkable variety of dynamical behaviour which can occur during their activation. We prove that in the presence of autophosphorylation one phenomenon, bistability, already occurs in a mathematical model for a protein with a single phosphorylation site. We further show that a certain model of Lck exhibits oscillations. Finally, we discuss the relations of these results to models in the literature which involve Lck and describe specific biological processes, such as the early stages of T cell activation and the stimulation of T cell responses resulting from the suppression of PD-1 signalling which is important in immune checkpoint therapy for cancer.
Hydrasterias sexradiata
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Forcipulatida
Pedicellasteridae
Hydrasterias
Hydrasterias sexradiata

description: sexradiatus Perrier, 1894, Pedicellaster
Pedicellaster sexradiatus Perrier, 1894: 100, pl. 9, fig. 2a, b.
Hydrasterias sexradiata ‒ Clark & Downey 1992: 410.
CURRENT STATUS. — Hydrasterias sexradiata (Perrier, 1894).
TYPE MATERIAL. — Canary Islands • holotype; station 3; Travailleur expedition (1881); 30°48’N, 12°03’W; 3307 m; MNHN- IE-2014-193.
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on page 316, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
Equations of motion of compact binaries at the third post-Newtonian order
Creators: name: Blanchet, Luc
Publisher: name: arXiv
Year: 2004
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: The equations of motion of two point masses in harmonic coordinates are derived through the third post-Newtonian (3PN) approximation. The problem of self-field regularization (necessary for removing the divergent self-field of point particles) is dealt with in two separate steps. In a first step the extended Hadamard regularization is applied, resulting in equations of motion which are complete at the 3PN order, except for the occurence of one and only one unknown parameter. In a second step the dimensional regularization (in d dimensions) is used as a powerful argument for fixing the value of this parameter, thereby completing the 3-dimensional Hadamard-regularization result. The complete equations of motion and associated energy at the 3PN order are given in the case of circular orbits.
description: 15 pages, to appear in the Proceedings of the International Conference on Gravitation and Cosmology (ICGC-2004), ed. by B.R. Iyer, V. Kuriakose and C.V. Vishveshwara, published by Pramana, The Indian Journal of Physics
Cosmology from Topological Defects
Creators: name: Gangui, Alejandro
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The potential role of cosmic topological defects has raised interest in the astrophysical community for many years now. In this set of notes, we give an introduction to the subject of cosmic topological defects and some of their possible observable signatures. We begin with a review of the basics of general defect formation and evolution, we briefly comment on some general features of conducting cosmic strings and vorton formation, as well as on the possible role of defects as dark energy, to end up with cosmic structure formation from defects and some specific imprints in the cosmic microwave background radiation from simulated cosmic strings. A detailed, pedagogical explanation of the mechanism underlying the tiny level of polarization discovered in the cosmic microwave background by the DASI collaboration (and recently confirmed by WMAP) is also given, and a first rough comparison with some predictions from defects is provided.
description: Lecture Notes delivered at the Xth Brazilian School on Cosmology and Gravitation, Mangaratiba, Rio de Janeiro, July 29 - August 9, 2002. To appear in the proceedings (AIP Press), edited by M. Novello and S. Perez Bergliaffa. Updated source files with high resolution figures available at http://www.iafe.uba.ar/relatividad/gangui/xescola/
MOESM7 of The complete mitochondrial genome of Taxus cuspidata (Taxaceae): eight protein-coding genes have transferred to the nuclear genome
Creators: name: Kan, Sheng-Long
name: Shen, Ting-Ting
name: Gong, Ping
name: Ran, Jin-Hua
name: Wang, Xiao-Quan
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Additional file 7: Table S3. Summary of mitochondrial RNA editing events in Taxus.
Additional file 2 of Genome-based analysis for the bioactive potential of Streptomyces yeochonensis CN732, an acidophilic filamentous soil actinobacterium
Creators: name: Adeel Malik
name: Kim, Yu
name: Jang, In
name: Sunghoon Hwang
name: Dong-Chan Oh
name: Kim, Seung
Publisher: name: figshare
Year: 2020
Subjects: subject: Space Science
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: Additional file 2: Table S1. antiSMASH clusters with CAZy domains and their known activities. Table S2. Antimicrobial test results of S. yeochonensis CN732 in various culture media.
Use of Quadrupolar Nuclei for Quantum Information processing by Nuclear Magnetic Resonance: Implementation of a Quantum Algorithm
Creators: name: Das, Ranabir
name: Kumar, Anil
Publisher: name: arXiv
Year: 2003
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Physical implementation of Quantum Information Processing (QIP) by liquid-state Nuclear Magnetic Resonance (NMR), using weakly coupled spin-1/2 nuclei of a molecule, is well established. Nuclei with spin$>$1/2 oriented in liquid crystalline matrices is another possibility. Such systems have multiple qubits per nuclei and large quadrupolar couplings resulting in well separated lines in the spectrum. So far, creation of pseudopure states and logic gates have been demonstrated in such systems using transition selective radio-frequency pulses. In this paper we report two novel developments. First, we implement a quantum algorithm which needs coherent superposition of states. Second, we use evolution under quadrupolar coupling to implement multi qubit gates. We implement Deutsch-Jozsa algorithm on a spin-3/2 (2 qubit) system. The controlled-not operation needed to implement this algorithm has been implemented here by evolution under the quadrupolar Hamiltonian. This method has been implemented for the first time in quadrupolar systems. Since the quadrupolar coupling is several orders of magnitude greater than the coupling in weakly coupled spin-1/2 nuclei, the gate time decreases, increasing the clock speed of the quantum computer.
description: 16 pages, 3 figures
Intraoperative surgical site infection control and prevention: a position paper and future addendum to WSES intra-abdominal infections guidelines
Creators: name: De Simone, Belinda
name: Sartelli, Massimo
name: Coccolini, Federico
name: Ball, Chad G.
name: Brambillasca, Pietro
name: Chiarugi, Massimo
name: Campanile, Fabio Cesare
name: Nita, Gabriela
name: Corbella, Davide
name: Leppaniemi, Ari
name: Boschini, Elena
name: Moore, Ernest E.
name: Biffl, Walter
name: Peitzmann, Andrew
name: Kluger, Yoram
name: Sugrue, Michael
name: Fraga, Gustavo
name: Di Saverio, Salomone
name: Weber, Dieter
name: Sakakushev, Boris
name: Chiara, Osvaldo
name: Abu-Zidan, Fikri M.
name: Ten Broek, Richard
name: Kirkpatrick, Andrew W.
name: Wani, Imtiaz
name: Coimbra, Raul
name: Baiocchi, Gian Luca
name: Kelly, Micheal D.
name: Ansaloni, Luca
name: Catena, Fausto
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Review
Emergency
Surgical site infection
Prevention
Intra-abdominal infection
Operating room

description: Abstract: Background: Surgical site infections (SSI) represent a considerable burden for healthcare systems. They are largely preventable and multiple interventions have been proposed over past years in an attempt to prevent SSI. We aim to provide a position paper on Operative Room (OR) prevention of SSI in patients presenting with intra-abdominal infection to be considered a future addendum to the well-known World Society of Emergency Surgery (WSES) Guidelines on the management of intra-abdominal infections. Methods: The literature was searched for focused publications on SSI until March 2019. Critical analysis and grading of the literature has been performed by a working group of experts; the literature review and the statements were evaluated by a Steering Committee of the WSES. Results: Wound protectors and antibacterial sutures seem to have effective roles to prevent SSI in intra-abdominal infections. The application of negative-pressure wound therapy in preventing SSI can be useful in reducing postoperative wound complications. It is important to pursue normothermia with the available resources in the intraoperative period to decrease SSI rate. The optimal knowledge of the pharmacokinetic/pharmacodynamic characteristics of antibiotics helps to decide when additional intraoperative antibiotic doses should be administered in patients with intra-abdominal infections undergoing emergency surgery to prevent SSI. Conclusions: The current position paper offers an extensive overview of the available evidence regarding surgical site infection control and prevention in patients having intra-abdominal infections.
MOESM8 of The complete mitochondrial genome of Taxus cuspidata (Taxaceae): eight protein-coding genes have transferred to the nuclear genome
Creators: name: Kan, Sheng-Long
name: Shen, Ting-Ting
name: Gong, Ping
name: Ran, Jin-Hua
name: Wang, Xiao-Quan
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 8: Table S4. Detailed information of RNA editing sites in the Taxus cuspidata mitogenome.
Two-dimensional structure of thin transonic discs: observational manifestations
Creators: name: Beskin, V. S.
name: Tchekhovskoy, A. D.
Publisher: name: arXiv
Year: 2004
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We study the two-dimensional structure of thin transonic accretion discs in the vicinity of a non-spinning black hole within the framework of hydrodynamical version of the Grad-Shafranov equation. Our analysis focuses on the region inside the marginally stable orbit (MSO), r < r_{ms}. We show that all components of the dynamical force in the disc become significant near the sonic surface and (especially) in the supersonic region. Under certain conditions, the disc structure can be far from radial, and we review the affected disc properties, in particular the role of the critical condition at the sonic surface. Finally, we present a simple model aimed at explaining quasi-periodical oscillations that have been observed in the infra-red and X-ray radiation of the Galactic Centre.
description: Changes in v.2: updated references, minor corrections. To appear in Proc. Workshop `Black Hole Astrophysics 2004', Pohang, S. Korea, 2004 Jan 13-16 (World Scientific), 10 pages, 5 figures, uses ws-procs9x6square.cls
Cnemidaster sigsbeei
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Forcipulatida
Zoroasteridae
Cnemidaster
Cnemidaster sigsbeei

description: sigsbeei Perrier, 1881, Zoroaster
(Fig. 29)
Zoroaster sigsbeei Perrier, 1881: 5; 1884: 195, pl. 3, fig. 2.
Cnemidaster sigsbeei ‒ Clark & Downey 1992: 403.
CURRENT STATUS. — Cnemidaster sigsbeei (Perrier, 1881).
TYPE MATERIAL. — Caribbean Sea • 1 syntype; BLAKE expedition (1878-1879); MNHN-IE-2014-282 • 1 syntype; same as for preceding; MNHN-IE-2014-284 • 1 syntype; same as for preceding; MNHN-IE-2014-429.
REMARK
Four syntypes are deposited in MCZ as MCZ 876, 877, 880 (Clark & Downey 1992).
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on page 316, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
Camarones Carídeos del Golfo de México
Creators: name: Ugalde, Diana
name: Simões, Nuno
Publisher: name: Zenodo
Year: 2021
Subjects: Carid shrimp
Carideans
Taxonomy
Gulf of Mexico
Biodiversity
Marine Biodiversity
Marine Biology

description: This Infographic is a product of BDMY project (https://www.bdmy.org.mx), that was produced with funds of the Harte Research Institute for Gulf of Mexico Studies.
 The information in the infographic was reviewed and validated by a group of specialists in the taxon. CC-BY-NC-ND
Boundaries, Vermas and factorisation
Creators: name: Bullimore, Mathew
name: Crew, Samuel
name: Zhang, Daniel
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Regular Article - Theoretical Physics
Supersymmetric Gauge Theory
Anomalies in Field and String Theories
Supersymmetry and Duality
Solitons Monopoles and Instantons

description: Abstract: We revisit the factorisation of supersymmetric partition functions of 3d N = 4 gauge theories. The building blocks are hemisphere partition functions of a class of UV N = (2, 2) boundary conditions that mimic the presence of isolated vacua at infinity in the presence of real mass and FI parameters. These building blocks can be unambiguously defined and computed using supersymmetric localisation. We show that certain limits of these hemisphere partition functions coincide with characters of lowest weight Verma mod- ules over the quantised Higgs and Coulomb branch chiral rings. This leads to expressions for the superconformal index, twisted index and S3 partition function in terms of such characters. On the way we uncover new connections between boundary ’t Hooft anomalies, hemisphere partition functions and lowest weights of Verma modules.
Tracing The Physical Conditions of Planet Formation with Molecular Excitation
Creators: name: Teague, Richard
Publisher: name: arXiv
Year: 2019
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: Understanding the physical structure of the planet formation environment, the protoplanetary disk, is essential for the interpretation of high resolution observations of the dust and future observations of the magnetic field structure. Observations of multiple transitions of molecular species offers a unique view of the underlying physical structure through excitation analyses. Here we describe a new method to extract high-resolution spectra from low-resolution observations, then provide two case studies of how molecular excitation analyses were used to constrain the physical structure in TW Hya, the closest protoplanetary disk to Earth.
description: Proceedings for Laboratory Astrophysics IAU symposium
Evidence for Solar Neutrino Flux Variability and its Implications
Creators: name: Caldwell, D. O.
name: Sturrock, P. A.
Publisher: name: arXiv
Year: 2003
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Althogh KamLAND apparently rules out Resonant-Spin-Flavor-Precession (RSFP) as an explanation of the solar neutrino deficit, the solar neutrino fluxes in the Cl and Ga experiments appear to vary with solar rotation. Added to this evidence, summarized here, a power spectrum analysis of the Super-Kamiokande data reveals significant variation in the flux matching a dominant rotation rate observed in the solar magnetic field in the same time period. Three frequency peaks, all related to this rotation rate, can be explained quantitatively. A Super-Kamiokande paper reported no time variation of the flux, but showed the same peaks, there interpreted as statistically insignificant, due to an inappropriate analysis. This modulation is small (7%) in the Super-Kamiokande energy region (and below the sensitivity of the Super-Kamiokande analysis) and is consistent with RSFP as a subdominant neutrino process in the convection zone. The data display effects that correspond to solar-cycle changes in the magnetic field, typical of the convection zone. This subdominant process requires new physics: a large neutrino transition magnetic moment and a light sterile neutrino, since an effect of this amplitude occurring in the convection zone cannot be achieved with the three known neutrinos. It does, however, resolve current problems in providing fits to all experimental estimates of the mean neutrino flux, and is compatible with the extensive evidence for solar neutrino flux variability.
description: 9 pages, 10 figures (5 in color); new figure, data added to another figure, more clarification, especially on the origin of the effect and its connection to sterile neutrinos; v3 is updated, especially using the results of hep-ph/0402194; v4 is a further update, mainly of references, with a small change to make the title more appropriate; v5 includes more clarification and the result of now having hep-ph/0411148 and hep-ph/0501205 and so increases the length; v6 has a small change in the title and some additional information at the referee's request to correspond to the version to be published in Astroparticle Physics
Keck Spectroscopy of 4 QSO Host Galaxies
Creators: name: Miller, J. S.
name: Sheinis, A. I.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present optical spectroscopy of the host galaxies of 4 QSO's: PG1444+407, PKS 2349-147, 3C 323.1, and 4C 31.63 having a redshift range (0.1 < z < 0.3). The spectra were obtained at the Keck Observatory with the LRIS instrument offset 2-4 arcseconds from the nucleus at several position angles in each galaxy. The objects close to 3C 323.1 and PKS 2349-147 have the same redshifts of their nearby QSOs and appear to be the nuclei of galaxies in the final states of merging with the host galaxies. The spectra of the hosts show some variety: PKS 2349-147 and 3C 323.1 show strong off-nuclear emission lines plus stellar absorption features, while the other two show only stellar absorption. PKS 2349-147 and PG 1444+407 have a mixture of old and moderately young stars, while 4C 31.63 has the spectrum of a normal giant elliptical, which is very rare in our larger sample. The spectrum of the host of 3C 323.1 appears to dominated by older stars, though our data for it are of lower quality. The redshifts of the off-nucleus emission lines and stellar components are very close to those of the associated QSOs.
description: 4 pages, 2 figures, 1 table, accepted for publication in ApJ Letters (May)
Comparative validation of the BOADICEA and Tyrer-Cuzick breast cancer risk models incorporating classical risk factors and polygenic risk in a population-based prospective cohort of women of European ancestry
Creators: name: Pal Choudhury, Parichoy
name: Brook, Mark N.
name: Hurson, Amber N.
name: Lee, Andrew
name: Mulder, Charlotta V.
name: Coulson, Penny
name: Schoemaker, Minouk J.
name: Jones, Michael E.
name: Swerdlow, Anthony J.
name: Chatterjee, Nilanjan
name: Antoniou, Antonis C.
name: Garcia-Closas, Montserrat
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Short Report
Absolute risk
BOADICEA
Breast cancer
IBIS
Model validation
Prospective cohort
Risk prediction
Tyrer-Cuzick

description: Abstract: Background: The Breast and Ovarian Analysis of Disease Incidence and Carrier Estimation Algorithm (BOADICEA) and the Tyrer-Cuzick breast cancer risk prediction models are commonly used in clinical practice and have recently been extended to include polygenic risk scores (PRS). In addition, BOADICEA has also been extended to include reproductive and lifestyle factors, which were already part of Tyrer-Cuzick model. We conducted a comparative prospective validation of these models after incorporating the recently developed 313-variant PRS. Methods: Calibration and discrimination of 5-year absolute risk was assessed in a nested case-control sample of 1337 women of European ancestry (619 incident breast cancer cases) aged 23–75 years from the Generations Study. Results: The extended BOADICEA model with reproductive/lifestyle factors and PRS was well calibrated across risk deciles; expected-to-observed ratio (E/O) at the highest risk decile :0.97 (95 % CI 0.51 − 1.86) for women younger than 50 years and 1.09 (0.66 − 1.80) for women 50 years or older. Adding reproductive/lifestyle factors and PRS to the BOADICEA model improved discrimination modestly in younger women (area under the curve (AUC) 69.7 % vs. 69.1%) and substantially in older women (AUC 64.6 % vs. 56.8%). The Tyrer-Cuzick model with PRS showed evidence of overestimation at the highest risk decile: E/O = 1.54(0.81 − 2.92) for younger and 1.73 (1.03 − 2.90) for older women. Conclusion: The extended BOADICEA model identified women in a European-ancestry population at elevated breast cancer risk more accurately than the Tyrer-Cuzick model with PRS. With the increasing availability of PRS, these analyses can inform choice of risk models incorporating PRS for risk stratified breast cancer prevention among women of European ancestry.
p-Mechanics and De Donder-Weyl Theory
Creators: name: Kisil, Vladimir V.
Publisher: name: arXiv
Year: 2003
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences
subject: 81R05, 81R15, 81T70, 81T05, 81S10, 81S30, 22E27, 22E70, 43A65

description: The orbit method of Kirillov is used to derive the p-mechanical brackets [quant-ph/0212101]. They generate the quantum (Moyal) and classic (Poisson) brackets on respective orbits corresponding to representations of the Heisenberg group. The extension of p-mechanics to field theory is made through the De Donder-Weyl Hamiltonian formulation. The principal step is the substitution of the Heisenberg group with Galilean. Keywords: Classic and quantum mechanics, Moyal brackets, Poisson brackets, commutator, Heisenberg group, orbit method, deformation quantisation, representation theory, De Donder-Weyl field theory, Galilean group, Clifford algebra, conformal Möbius transformation, Dirac operator
description: LaTeX, 8 pages, no figures
On the metric theory of inhomogeneous Diophantine approximation: An Erdős-Vaaler type result
Creators: name: Yu, Han
Publisher: name: arXiv
Year: 2020
Subjects: subject: Number Theory (math.NT)
subject: FOS: Mathematics

description: In 1958, Szüsz proved an inhomogeneous version of Khintchine's theorem on Diophantine approximation. Szüsz's theorem states that for any non-increasing approximation function $ψ:\mathbb{N}\to (0,1/2)$ with $\sum_q ψ(q)=\infty$ and any number $γ,$ the following set \[ W(ψ,γ)=\{x\in [0,1]: |qx-p-γ|< ψ(q) \text{ for infinitely many } q,p\in\mathbb{N}\} \] has full Lebesgue measure. Since then, there are very few results in relaxing the monotonicity condition. In this paper, we show that if $γ$ is can not be approximate by rational numbers too well, then the monotonicity condition can be replaced by the upper bound condition $ψ(q)=O((q(\log\log q)^2)^{-1}).$ In particular, this covers the case when $γ$ is not Liouville, for example $π,e,\ln 2, \sqrt{2}.$ In general, if $γ$ is irrational, $ψ(q)=O(q^{-1}(\log\log q)^{-2})$ and in addition, \[ \left(\liminf_{Q\to\infty} \sum_{q=Q}^{Q^{(\log Q)^{1/8} }}ψ(q)\right)=\infty, \] then $W(ψ,γ)$ has full Lebesgue measure. Our proof is based on a quantitative study of the discrepancy for irrational rotations.
description: extended some of the results in an earlier version
Reconfigurable Intelligent Surfaces: Bridging the gap between scattering and reflection
Creators: name: Garcia, J. Bucheli
name: Sibille, A.
name: Kamoun, M.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Information Theory (cs.IT)
subject: Signal Processing (eess.SP)
subject: Applied Physics (physics.app-ph)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Physical sciences

description: In this work we address the distance dependence of reconfigurable intelligent surfaces (RIS). As differentiating factor to other works in the literature, we focus on the array near-field, what allows us to comprehend and expose the promising potential of RIS. The latter mostly implies an interplay between the physical size of the RIS and the size of the Fresnel zones at the RIS location, highlighting the major role of the phase. To be specific, the point-like (or zero-dimensional) conventional scattering characterization results in the well-known dependence with the fourth power of the distance. On the contrary, the characterization of its near-field region exposes a reflective behavior following a dependence with the second and third power of distance, respectively, for a two-dimensional (planar) and one-dimensional (linear) RIS. Furthermore, a smart RIS implementing an optimized phase control can result in a power exponent of four that, paradoxically, outperforms free-space propagation when operated in its near-field vicinity. All these features have a major impact on the practical applicability of the RIS concept. As one contribution of this work, the article concludes by presenting a complete signal characterization for a wireless link in the presence of RIS on all such regions of operation.
Luidia sarsi Duben & Koren 1845
Creators: name: Jangoux, Michel
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Echinodermata
Asteroidea
Paxillosida
Luidiidae
Luidia
Luidia sarsi

description: simplex Perrier, 1894, Astrella
Astrella simplex Perrier, 1894: 193, pl. 14, fig. 3a, b.
Luidia sarsi ‒ Clark & Downey 1992: 18.
CURRENT STATUS. — Luidia sarsi Düben & Koren, 1845.
TYPE MATERIAL. — Mediterranea • 4 syntypes; station 28; Travailleur expedition; 1881; 35°21’N, 06°42’W; depth 322 m; MNHN- IE-2014-198.
description: Published as part of Jangoux, Michel, 2022, The type specimens of extant asteroids (Echinodermata) in the Muséum national d'Histoire naturelle of Paris, pp. 259-334 in Zoosystema 44 (11) on page 316, DOI: 10.5252/zoosystema2022v44a11, http://zenodo.org/record/6616817
Remarks on codes from modular curves: MAGMA applications
Creators: name: Joyner, David
name: Shokranian, Salahoddin
Publisher: name: arXiv
Year: 2004
Subjects: subject: Number Theory (math.NT)
subject: Information Theory (cs.IT)
subject: Algebraic Geometry (math.AG)
subject: FOS: Mathematics
subject: FOS: Computer and information sciences
subject: 14H37, 94B27,20C20,11T71,14G50,05E20,14Q05

description: Expository paper discussing AG or Goppa codes arising from curves, first from an abstract general perspective then turning to concrete examples associated to modular curves. We will try to explain these extremely technical ideas using a special case at a level to a typical graduate student with some background in modular forms, number theory, group theory, and algebraic geometry. Many examples using MAGMA are included.
description: 29 pages
Raumdeutungen
Creators: name: Ehlert, Franziska
Publisher: name: Universität Rostock
Year: 2017
Subjects: subject: 200 Religion
subject: 220 Bible
subject: 230 Christian theology

description: Die Dissertation arbeitet die mit dem Spatial Turn in den Kultur- und Sozialwissenschaften etablierten Zugänge zum Raum auf und befragt sie gezielt auf ihre religionspädagogischen Rezeptionsmöglichkeiten. Raum wird dabei in all seinem Facettenreichtum zur Verstehenskategorie erhoben, von der aus um das Neuverstehen von Welt gerungen werden kann. Es wird, über die Kirchenraumpädagogik hinausgehend, eine erste Verankerung der hermeneutischen Perspektive auf den Raum in der Religionspädagogik realisiert und ihr Potential am biblischen Textbeispiel, sowie an Phänomenen religiöser Bildung gezeigt.
The Covering-Assignment Problem for Swarm-powered Ad-hoc Clouds: A Distributed 3D Mapping Use-case
Creators: name: Costa, Leandro R.
name: Aloise, Daniel
name: Gianoli, Luca G.
name: Lodi, Andrea
Publisher: name: arXiv
Year: 2020
Subjects: subject: Signal Processing (eess.SP)
subject: Optimization and Control (math.OC)
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: FOS: Mathematics

description: The popularity of drones is rapidly increasing across the different sectors of the economy. Aerial capabilities and relatively low costs make drones the perfect solution to improve the efficiency of those operations that are typically carried out by humans (e.g., building inspection, photo collection). The potential of drone applications can be pushed even further when they are operated in fleets and in a fully autonomous manner, acting de facto as a drone swarm. Besides automating field operations, a drone swarm can serve as an ad-hoc cloud infrastructure built on top of computing and storage resources available across the swarm members and other connected elements. Even in the absence of Internet connectivity, this cloud can serve the workloads generated by the swarm members themselves, as well as by the field agents operating within the area of interest. By considering the practical example of a swarm-powered 3D reconstruction application, we present a new optimization problem for the efficient generation and execution, on top of swarm-powered ad-hoc cloud infrastructure, of multi-node computing workloads subject to data geolocation and clustering constraints. The objective is the minimization of the overall computing times, including both networking delays caused by the inter-drone data transmission and computation delays. We prove that the problem is NP-hard and present two combinatorial formulations to model it. Computational results on the solution of the formulations show that one of them can be used to solve, within the configured time-limit, more than 50% of the considered real-world instances involving up to two hundred images and six drones.
Additional file 4 of Inelastic deformation zone in the lower crust for the San-in Shear Zone, Southwest Japan, as observed by a dense GNSS network
Creators: name: Meneses-Gutierrez, Angela
name: Nishimura, Takuya
Publisher: name: figshare
Year: 2020
Subjects: subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer

description: Additional file 4: Figure S4. Distributions of chi-squared residuals in Western Tottori when locking depth is a free parameter in the model calculation. Red diamond indicates the model that minimized the sum of the squared residuals.
MOESM9 of The complete mitochondrial genome of Taxus cuspidata (Taxaceae): eight protein-coding genes have transferred to the nuclear genome
Creators: name: Kan, Sheng-Long
name: Shen, Ting-Ting
name: Gong, Ping
name: Ran, Jin-Hua
name: Wang, Xiao-Quan
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Additional file 9: Figure S5. Examples of genes with striking divergence between observed and predicted (PREP with cutoff value = 0.2, PREPACT with filter threshold = 20%) RNA editing sites. The horizontal line represents gene length, and the vertical line indicates the position of RNA editing site.