cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Changing land use and children's health in Mae Chaem, northern Thailand
Creators: name: Candler, Craig Thomas
Publisher: name: University of British Columbia
Year: 2008

description: Based on oral histories of agriculture and health in the Mae Chaem valley, northern Thailand, this work documents changing child health and medical practice since the 1950's and explores possible connections with increasing pesticide use. The research shows how local knowledge can help us understand relationships between changing technology, ecology, and human health. Parents and farmers in the Mae Chaem valley of Chiang Mai province, Northern Thailand, live at the intersection of multiple local and global streams of land use and child health biotechnology. Based on systematically collected autobiographical oral histories from parents and farmers, as well as interviews and participant observation with land use and child health experts the study considers the relationships between child health and land use change, and particularly the rise of pesticide intensive cash cropping, since the late 1950’s. Introductory chapters on theory and methods precede a description of the ethnographic context. Case studies illustrating parent and farmer histories of child health and land use change spanning fifty years are provided. Seven streams of biotechnical expertise are identified, and mini-ethnographies are provided for each including domestic, Buddhist, Muang, spirit, market, national, and Christian. These seven streams are analyzed using actor-network theory (ANT) with relationships to particular notions of ontology, cosmology, and ecology. Results demonstrate the ongoing importance of parents and farmers as decision making agents at the intersection of multiple and competing cultural and biotechnical streams, even where they face efforts by large multinational corporations or other agencies to advertise, constrain and monopolize local biotechnical choice. Within the fifty year time period under consideration, the oral histories describe particular child health and land use trends. These locally perceived trends provide challenging perspectives on the relationship between ‘development’ and child health in Thailand. While children die far less often now than in the past, oral histories suggest that both children and fields now suffer from more kinds of illness, and more often, than before. In particular, both qualitative and more quantitative analysis suggests differences in the experience of child health among pesticide and non-pesticide using households.
Tylodelphys Diesing 1850
Creators: name: Achatz, Tyler J
name: Chermak, Taylor P
name: Martens, Jakson R
name: Woodyard, Ethan T
name: Rosser, Thomas G
name: Pulis, Eric E
name: Weinstein, Sara B
name: Mcallister, Chris T
name: Kinsella, John M
name: Tkach, Vasyl V
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Platyhelminthes
Trematoda
Diplostomida
Diplostomidae
Tylodelphys

description: REMARKS ON TYLODELPHYS
Based on our analysis, Tylodelphys spp. belong to at least three distinct clades (Fig. 1). Achatz et al. (In press) recently suggested that Tylodelphys americana (Dubois, 1936) (see Dubois, 1936b) and Tylodelphys sp. 4 may need to be placed in a novel genus. However, the inclusion of the DNA sequence of T. excavata in the present analysis has further complicated the situation. It is possible that Tylodelphys as currently recognized may represent a complex of genera and requires the establishment of at least two new genera. DNA sequences from adult specimens of T. clavata (von Nordmann, 1832) are necessary for a conclusive decision regarding the status of Tylodelphys.
The majority of Tylodelphys spp. and members of the closely related Austrodiplostomum and Diplostomum are known to primarily parasitize piscivorous birds (Achatz et al., In press). Achatz et al. (In press) recently revealed the presence of two Diplostomum spp. parasitizing North American river otters Lontra canadensis (Schreber, 1777) in the USA. Based on the results of the present study, T. variabilis represents the first species of Tylodelphys that secondarily switched from avian to mammalian definitive hosts. Transitions between birds and mammals may happen when hosts occur in the same environments and have overlapping diets; similar to many aquatic birds, otters and raccoons feed on fishes and amphibians.
description: Published as part of Achatz, Tyler J, Chermak, Taylor P, Martens, Jakson R, Woodyard, Ethan T, Rosser, Thomas G, Pulis, Eric E, Weinstein, Sara B, Mcallister, Chris T, Kinsella, John M & Tkach, Vasyl V, 2022, Molecular phylogeny supports invalidation of Didelphodiplostomum and Pharyngostomoides (Digenea: Diplostomidae) and reveals a Tylodelphys from mammals, pp. 124-136 in Zoological Journal of the Linnean Society 196 (1) on page 133, DOI: 10.1093/zoolinnean/zlab114, http://zenodo.org/record/7031477
Zodariidae Thorell 1881
Creators: name: Zamani, Alireza
name: Marusik, Yuri M.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Zodariidae

description: Key to the subfamilies occurring in Middle Asia
1. Large (> 10 mm) with spiny legs and long cheliceral fangs.................................... ............... Lachesaninae (comprising a single genus in the region: Lachesana)
- Small (<10 mm), legs spineless, cheliceral fangs short ......................... Zodariinae
description: Published as part of Zamani, Alireza & Marusik, Yuri M., 2022, A new genus of Zodariidae (Arachnida: Araneae) from Tajikistan, pp. 1187-1198 in Journal of Natural History 56 (25 - 28) on page 1188, DOI: 10.1080/00222933.2022.2115422, http://zenodo.org/record/7087046
Zodariinae Thorell 1881
Creators: name: Zamani, Alireza
name: Marusik, Yuri M.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Zodariidae

description: Key to the genera of Zodariinae occurring in Middle Asia
1. Six eyes ................................................................. Trygetus Simon, 1882 (one species)
- Eight eyes .............................................................................................................................. 2
2. Cymbium with tutaculum and deep diverticulum, RTA with 1 or 2 transversal outgrowth(s), copulatory ducts screwed and convergings ................. ............................................................................................ Zodariellum (14 species)
- Different................................................................................................................................... 3
3. RTA with spine-like setae, epigyne with septum and distinct arch-shaped anterior hood .................................................. Spinozodium gen. nov. (two species)
- RTA without spine-like setae, epigyne lacking septum ....................................... 4
4 Male palpal tibia with only RTA, RTA longer than tibia, embolus filamentous, cymbium lacking depression, epigynal fovea wider than long ............................. ................................................................................................. Parazodarion (one species)
- Male palpal tibia with two apophyses, RTA not longer than tibia, cymbium with shallow baso-dorsal depression, embolus not filamentous, epigynal fovea longer than wide ................ Acanthinozodium Denis, 1966 (one species)
description: Published as part of Zamani, Alireza & Marusik, Yuri M., 2022, A new genus of Zodariidae (Arachnida: Araneae) from Tajikistan, pp. 1187-1198 in Journal of Natural History 56 (25 - 28) on pages 1188-1189, DOI: 10.1080/00222933.2022.2115422, http://zenodo.org/record/7087046
Role of phosphatases in controlling arabidopsis mapk signalling cascades
Creators: name: Lee, Jin Suk
Publisher: name: University of British Columbia
Year: 2008

description: Plants possess integrated signalling networks that mediate the responses to various environmental conditions. Mitogen-activated protein kinases (MAPKs) constitute a highly conserved family of enzymes in eukaryotes, and in plants MAPK-based signal transduction modules regulate a large number of physiological processes, including responses to environmental stresses and phytohormones. Regulated dephosphorylation of active MAPKs is a key component of the control of MAPK signalling cascades, and in mammals, members of the MAPK phosphatase (MKP) sub-class of dual-specificity tyrosine phosphatases have been recognized as key players for inactivating MAPKs. Five MKP homologues are found in Arabidopsis thaliana, but only limited information is available concerning their properties and biological roles. Based on initial data derived from my reverse genetics and protein interaction studies of these five potential MKPs, as well as gene function information in the literature, I chose to focus on two putative Arabidopsis MKPs, AtMKP2 and Indole-3-Butyric Acid-response 5 (IBR5). By using a combination of genetic and biochemical studies, I established that the previously uncharacterized MKP designated AtMKP2, participates in the regulation of cellular homeostasis in ozone-challenged tissue, and can influence the activation state of two MAPKs, MPK3 and MPK6. AtMKP2-suppressed plants displayed significantly prolonged MPK3 and MPK6 activation during ozone treatment, and recombinant AtMKP2 was able to dephosphorylate both phospho-MPK3 and phospho-MPK6 in vitro, providing direct evidence that AtMKP2 may target these oxidant-activated MAPKs. A mutation in IBR5, one of the five potential AtMKPs, was previously reported to confer reduced sensitivity to auxin and ABA in Arabidopsis. My protein interaction studies demonstrated that IBR5 and MPK12 are physically coupled and that the C-terminus of MPK12 is essential for its interaction with IBR5. In vitro dephosphorylation assays indicated that recombinant phosphoMPK12 is efficiently dephosphorylated by IBR5. In transgenic plants with reduced expression of the MPK12 gene, root growth is hypersensitive to exogenous auxins, consistent with the lower auxin sensitivity reported for ibr5 mutants. Taken together, my data demonstrate for the first time that both AtMKP2 and IBR5 are bona fide Arabidopsis MAPK phosphatases and that they serve as important regulators of oxidative stress and auxin signalling, respectively, in Arabidopsis.
Rediviva (Gigaviva) Kuhlmann & Jürgensen & Michez 2020, subgen. nov.
Creators: name: Kuhlmann, Michael
name: Jürgensen, Lea-Sophie
name: Michez, Denis
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Melittidae
Rediviva

description: Rediviva (Gigaviva) subgen. nov.
Type species: Rediviva (Gigaviva) gigas Whitehead & Steiner 1993, designated here.
The only species in this subgenus is R. gigas.
Diagnosis. The subgenus is monotypic and contains only R. gigas which is the largest species of the genus (15–18 mm). Males are characterised by a combination of S7 without lateral lobes (with lateral lobes in all other species except Redivivoides karooensis and R. namaquaensis), median lobes basally twice as broad as long (Whitehead & Steiner 2001: Figs 5B–C) (as broad as long or longer in other subgenera) and S8 apically broadened with margin deeply cleft (strait, notched, emarginate or semi-circular in other subgenera) (Whitehead & Steiner 2001: Figs 5D, 64G).
Females show a unique combination of a broadened hind tibia and basitarsus with the scopa consisting of densely plumose pubescence for transporting floral oil (Fig. 3f) (in Redivivoides hind tibia not broadened and without plumose pubescence) and a tridentate mandible (bidentate in other subgenera). The species has an isolated position within the genus and, among others, collects oil on flowers of Tritoniopsis parviflora (Iridaceae) (Manning & Goldblatt 2002, 2005) and Ixianthes retzioides (Scrophulariaceae) (Whitehead & Steiner 1993, Steiner & Whitehead 1996) that are not used by any other Rediviva species (Kuhlmann & Hollens 2015).
Etymology. The new subgeneric name is a combination of the first part of the specific epithet of the type species R. gigas and the last part of the generic name Rediviva. The gender of the name is feminine.
Distribution. The species is only known from the southwestern part of the winter rainfall region (Whitehead & Steiner 2001).
description: Published as part of Kuhlmann, Michael, Jürgensen, Lea-Sophie & Michez, Denis, 2020, Subgeneric classification of the bee genus Rediviva Friese (Hymenoptera: Apiformes: Melittidae), pp. 318-328 in Zootaxa 4790 (2) on pages 322-325, DOI: 10.11646/zootaxa.4790.2.7, http://zenodo.org/record/3889561
Distance based vehicle insurance : actuarial and planning issues
Creators: name: Babiuk, Michelle
Publisher: name: University of British Columbia
Year: 2008

description: Distance based vehicle insurance (sometimes know as “Pay as you drive,” “Pay by the mile” or “Pay per-km” insurance) has long been advocated by transportation planners as a transportation demand management (TDM) strategy. In addition to reducing congestion and greenhouse gas emissions, it also has the potential to meet a number of planning goals, such as health and equity improvements. Despite the wide interest in and predicted benefits of distance based insurance, there is little consensus on the detailed design of a system that could be implemented. Five main distance based pricing schemes have been proposed: a flat per-km rate, temporal or “time of day” pricing, road-type pricing, demographic pricing and “differential” pricing, which prices low mileages at a higher per-km rate. Each of these systems treats risk differently and thus results in different cross-subsidies between drivers. The proposal’s design thus has implications for an insurance system’s fairness and equity. This report examines the distribution of crash risk across time, across space, and across the different demographic groups. It then compares the current annual insurance system’s treatment of risk with that of various proposals for distance based insurance. It evaluates each proposal, considering its treatment of risk and its potential for increasing fairness and equity of costs and of mobility. It also examines each proposal’s other impacts, such as effectiveness in maintaining privacy and in reducing health impacts, greenhouse gas emissions and congestion. The recommended model is a flat per-km rate. Each driver would pay the same rate for every kilometer driven, regardless of time or place. However, individual drivers’ per-km rates would vary, depending on current insurance rating factors, such as residential location, type of car and driving record.
Compsibidion cleophile
Creators: name: Monné, Miguel A.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Compsibidion
Compsibidion cleophile

description: 70. Compsibidion cleophile (Thomson, 1865)
Octoplon cleophile Thomson, 1865: 574.
Compsibidion cleophile; Martins, 1969: 772.
Octoplon adelphum Thomson, 1867c: 158.
Distribution. Brazil (Maranhão, Bahia, Minas Gerais, Espírito Santo, Rio de Janeiro, São Paulo, Paraná, Santa Catarina).
Specimen examined. BRAZIL, Minas Gerais: Mun. Catas Altas, RPPN Serra do Caraça, 1350 m, male, 14.XII.1974, M.A. Monné.
description: Published as part of Monné, Miguel A., 2017, New species and new records of Cerambycidae (Insecta, Coleoptera) from RPPN Sanctuary of Caraça, Minas Gerais, Brazil, pp. 201-262 in Zootaxa 4319 (2) on page 217, DOI: 10.11646/zootaxa.4319.2.1, http://zenodo.org/record/889107
MOESM3 of Cold temperature blocks thyroid hormone-induced changes in lipid and energy metabolism in the liver of Lithobates catesbeianus tadpoles
Creators: name: Suzuki, Shunsuke
name: Awai, Koichiro
name: Ishihara, Akinori
name: Yamauchi, Kiyoshi
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Inorganic Chemistry
subject: Hematology
subject: Plant Biology

description: Additional file 3: Figure S1. Pathways of glycerophospholipid synthesis (A) and very long chain fatty acid desaturation and elongation (B) related to the transcription data. Transcription data and full names of genes are shown in Fig. 7 and its legend. Transcription regulatory protein is boxed in green, hepatic lipids and fatty acids analyzed (see Table 1 and Fig. 2) are boxed. 3,3′,5-Triiodothyronine-response and cold-response genes on day 3 or day 7 are marked in red and blue, respectively. PC, phosphatidylcholine; PE, phosphatidylethanolamine; PS, phosphatidylserine; PI, phosphatidylinositol; PG, phosphatidylglycerol; CL, cardiolipin; Cho-p, choline phosphate; CDP-Cho, cytidine diphosphate choline; CDP-Etn, cytidine diphosphate ethanolamine. PA, palmitic acid; POA, palmitoleic acid; SA, stearic acid; OA, oleic acid; LA, linoleic acid; GLA, γ-linolenic acid; AA, arachidonic acid; ALA, α-linolenic acid; EPA, eicosapentaenoic acid; DPA, docosapentaenoic acid; DHA, docosahexaenoic acid.
Compsibidion divisum Martins 1969
Creators: name: Monné, Miguel A.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Compsibidion
Compsibidion divisum

description: 71. Compsibidion divisum Martins, 1969 (Figure 12)
Compsibidion divisum Martins, 1969: 769.
Distribution. Brazil (Bahia, Minas Gerais, Rio de Janeiro). Specimen examined. BRAZIL, Minas Gerais: Mun. Catas Altas, RPPN Serra do Caraça, 1350 m, male, XII.1975, M.A. Monné
description: Published as part of Monné, Miguel A., 2017, New species and new records of Cerambycidae (Insecta, Coleoptera) from RPPN Sanctuary of Caraça, Minas Gerais, Brazil, pp. 201-262 in Zootaxa 4319 (2) on page 218, DOI: 10.11646/zootaxa.4319.2.1, http://zenodo.org/record/889107
Additional file 4: of Relative efficacy of different types of exercise for treatment of knee and hip osteoarthritis: protocol for network meta-analysis of randomised controlled trials
Creators: name: Siew-Li Goh
name: Persson, Monica
name: Bhattacharya, Archan
name: Hall, Michelle
name: Doherty, Michael
name: Weiya Zhang
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology

description: Equations for calculations. (DOCX 31 kb)
Rediviva (Deriviva) Kuhlmann & Jürgensen & Michez 2020, subgen. nov.
Creators: name: Kuhlmann, Michael
name: Jürgensen, Lea-Sophie
name: Michez, Denis
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Melittidae
Rediviva

description: Rediviva (Deriviva) subgen. nov.
Type species: Notomelitta intermixta Cockerell 1934: 450; designated here.
Rediviva intermixta (Cockerell 1934): Transferred to Rediviva by Michener (1981: 47).
The five species placed in this subgenus (clade A of Kahnt et al. 2017) are listed in table 1.
Diagnosis. Males of Deriviva have a unique combination of lateral lobes of S7 either smooth (not striate) or completely reduced (striate in Rediviva s.str.), and median lobes either short and hardly longer than their basal width (much broader than long in Gigaviva) or if longer forming jointly ± a right angle (acute-angled or parallel in Rediviva s.str.); median lobes not distinctly apically broadened (Figs 2 a–b, d–e) (spatulate in Albiviva). Apical plate of S8 distally notched (Fig. 2c) (strait, deeply cleft, emarginate or semi-circular in other subgenera), except in R. intermedia where it is evenly rounded (Fig. 2f). Males of Redivivoides species fit this diagnosis and are currently indistinguishable from Deriviva so can only be assigned to a subgenus through the associated female.
Females of three of the five species (Table 1) in this subgenus (R. intermedia, R. intermixta, R. rufipes) can be identified by a broadened hind tibia and basitarsus with the scopa consisting of densely plumose pubescence for transporting floral oil (Fig. 3f) (in Redivivoides hind tibia not broadened and without plumose pubescence), bidentate mandible (tridentate in Gigaviva) and inconspicuous yellowish apical tergal hair bands (Fig. 3b) (distinct white apical hair bands in Albiviva) in combination with a small shiny scale-like projection on the distal-dorsal angle of the hind basitarsus (Fig. 3e). In R. intermedia and R. rufipes this projection is in combination with an apical hairy spine on the front coxa (Fig. 3d). The remaining two species, R. colorata and R. saetigera, lack this projection and cannot be distinguished from females of Rediviva s. str.
Etymology. The new subgeneric name is an anagram of the generic name Rediviva. The gender of the name is feminine.
Distribution. Species of Deriviva occur in most parts of the range of the genus (Whitehead & Steiner 2001, Whitehead et al. 2008).
description: Published as part of Kuhlmann, Michael, Jürgensen, Lea-Sophie & Michez, Denis, 2020, Subgeneric classification of the bee genus Rediviva Friese (Hymenoptera: Apiformes: Melittidae), pp. 318-328 in Zootaxa 4790 (2) on pages 320-322, DOI: 10.11646/zootaxa.4790.2.7, http://zenodo.org/record/3889561
A mass measurement of the short-lived halo nucleus ¹¹Li with the TITAN Penning trap spectrometer
Creators: name: Smith, Mathew Jonathon
Publisher: name: University of British Columbia
Year: 2008

description: New measurements of the masses of the isotopes⁸,⁹,¹¹Li were made using recently commissioned TITAN Penning trap mass spectrometer at TRIUMF. The measurement of the halo nucleus ¹¹Li represents a new standard in Penning trap mass spectrometry, as it is the shortest lived, t₁/₂ = 8.8 ms, isotope ever weighed using this technique. Low energy, E = 20 keV, beams of these radioactive isotopes were produced using the ISAC facility. These were subsequentlycooled and bunched using a square-wave-driven Radio- Frequency Quadrupole (RFQ) ion guide, which was filled with hydrogen gas. The cooled ion bunches were then passed into a Penning trap where the mass measurements were made. A description of the RFQ in the ISAC hall is given along with some results from the commissioning of the device. A new set of harmonic deceleration optics is presented which have been successfully used to inject ions into the RFQ. Cooling of lithium ions with high DC efficiencies of 20%, in helium, and 40%, in hydrogen, are shown. Extraction of extremely short ion bunches, 30 ns FWHM, is also demonstrated. Storage times for stable lithium ions in helium and hydrogen were investigated. It was found that lithium ions could be cooled in hydrogen for up to 30 ms without significant losses whereas cooling in helium lead to exponential losses with a half-life of 5.7(1)ms. The TITAN Penning trap is described and the ⁸,⁹,¹¹Li data presented. Final values for the mass excess of ∆(⁸Li) = 20945.70(38) keV, ∆(⁹Li) = 24954.80(60) keV and ∆(¹¹Li) = 40728.1(12) keV are obtained. The ⁹,¹¹Li results are then used to obtain a new value for two neutron separation energy of ¹¹Li, S₂n = 369.3(1.3) keV. This agrees with the recent measurement from the MISTRAL spectrometer, 376(5) keV, at the two sigma level, but shows over three standard deviations from the most recent atomic mass evaluation, 300(20) keV
Soliton interactions in a spinor F=1 Bose-Einstein Condensate
Creators: name: Panagos, Theofanis
Publisher: name: Universität Hamburg
Year: 2023

description: Solitons are nonlinear excitations that can arise in Bose-Einstein condensates (BECs). They owe their existence to the balance between dispersion and nonlinearity. Here, we present properties and dynamics of two interacting dark-bright-dark (DBDs) as well as bright-dark-bright solitons (BDBs) of a three-component spinor F = 1 BEC in ferromagnetic, antiferromagnetic and non-spinor interacting configurations. First, we consider interaction in free space and investigate the dependence of the dynamics on the phase differences among the bright solitons, restricted to the cases ∆ϕ = {0, π}. For this purpose, static single DBD and BDB states with different phases between the components have been realized. The presence of phase-sensitive terms in the Hamiltonian sets a concrete condition, which must be fulfilled by the phases of the components in order for a static state to exist. Subsequently, the above single-soliton states are properly combined to form the initial two-DBD and two-BDB states. The different possible phase confgurations are classified based on the system's symmetries. The two-DBD system is trivially classified into two cases: bright solitons in-phase (∆ϕ = 0) or out-of-phase (∆ϕ = π). The two-BDB system is classified into three cases: in the first two, both bright-soliton pairs are in- or out-of-phase, while in the third case, one bright-soliton pair is in-phase and the other is out-of-phase. It has been found that, for both DBD and BDB systems, the in-phase and outof-phase cases exhibit similar dynamics. More specifically, in the in-phase case a repulsive effective interaction between the two solitons occurs, while in the out-of-phase case it is attractive for large distances and turns repulsive at short distances. In the third case, the dynamics are characterized by the competition between repulsion and attraction, and the presence of a breathing mode related to the violation of the aforementioned phase condition. Finally, we investigate the static properties of an in-phase pair of BDBs in the presence of a harmonic trapping potential, while varying the trap frequency and the strength of the quadratic Zeeman term.
Additional file 6 of Advantages of continuous genotype values over genotype classes for GWAS in higher polyploids: a comparative study in hexaploid chrysanthemum
Creators: name: Grandke, Fabian
name: Singh, Priyanka
name: Heuven, Henri
name: Haan, Jorn De
name: Metzler, Dirk
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: Genotype calling Growth. PDF including 12 images of genotype calls produced with SuperMASSA. (PDF 960 kb)
MPEC 2024-L144 : 2024 LY4
Creators: name: Minor Planet Center Staff
Publisher: name: The Minor Planet Center
Year: 2024
Subjects: subject: Small Solar System bodies
valueUri: http://astrothesaurus.org/uat/1469
subject: 2024 LY4

description: The Minor Planet Electronic Circulars contain information on unusual minor planets, routine data on comets and natural satellites, and occasional editorial announcements.  They are published on behalf of Division F of the International Astronomical Union by the Minor Planet Center, Smithsonian Astrophysical Observatory, Cambridge, MA 02138, U.S.A.
Compsibidion fairmairei
Creators: name: Monné, Miguel A.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Compsibidion
Compsibidion fairmairei

description: 72. Compsibidion fairmairei (Thomson, 1865)
Ibidion fairmairei Thomson, 1865: 572.
Ibidion (Heterachthon) fairmairei; Thomson, 1867c: 148.
Compsa fairmairei; Lacordaire, 1868: 333.
Compsibidion fairmairei; Martins, 1969: 708.
Compsa arcufera Gounelle, 1909: 669.
Distribution. Brazil (Maranhão, Goiás, Mato Grosso, Sergipe, Alagoas, Bahia, Minas Gerais, Espírito Santo, Rio de Janeiro, São Paulo, Paraná, Santa Catarina, Rio Grande do Sul), Bolivia (Santa Cruz), Paraguay, Argentina (Jujuy, Salta, Catamarca, Tucumán, Santiago del Estero, Chaco, Buenos Aires), Uruguay. Reported from Serra do Caraça (Vulcano et al., 1980: 106).
description: Published as part of Monné, Miguel A., 2017, New species and new records of Cerambycidae (Insecta, Coleoptera) from RPPN Sanctuary of Caraça, Minas Gerais, Brazil, pp. 201-262 in Zootaxa 4319 (2) on page 218, DOI: 10.11646/zootaxa.4319.2.1, http://zenodo.org/record/889107
Rediviva (Albiviva) Kuhlmann & Jürgensen & Michez 2020, subgen. nov.
Creators: name: Kuhlmann, Michael
name: Jürgensen, Lea-Sophie
name: Michez, Denis
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Melittidae
Rediviva

description: Rediviva (Albiviva) subgen. nov.
Type species: Rediviva (Albiviva) albifasciata Whitehead & Steiner 1994, designated here.
The only species in this subgenus is R. albifasciata.
Diagnosis. The subgenus is monotypic and just contains R. albifasciata which is the smallest species of the genus (8–10 mm). Males can be recognized by a combination of the following characters: median lobes of S7 spatulate (Fig. 4b) (not apically broadened in other subgenera); lateral lobes large and smooth, papillate on basal third (in Gigaviva lateral lobes missing; not papillate in other subgenera); apical plate of S8 distally straight (Fig. 4a) (apical margin deeply cleft in Gigaviva; apically notched, emarginate or semi-circular in other subgenera).
Females show a unique combination of a broadened hind tibia and basitarsus with the scopa consisting of densely plumose pubescence (Fig. 3f) (in Redivivoides hind tibia not broadened and without plumose pubescence), bidentate mandible (tridentate in Gigaviva) and small shiny scale-like projection on the distal-dorsal angle of the hind basitarsus (smaller than in Fig. 3e) (projection distinctly larger in R. intermedia, R. intermixta and R. rufipes of subgenus Deriviva, missing in all other species) in combination with the small size and distinct white apical tergal hair bands (Fig. 3a) (less conspicuous yellowish or missing in all other subgenera) that only occur in this species. This is the only Rediviva species that collects oil in flowers of Colpias mollis (Scrophulariaceae) (Steiner & Whitehead 2002, Kuhlmann & Hollens 2015).
Etymology. The new subgeneric name is a combination of the first part of the specific epithet of the type species R. albifasciata and the last part of the generic name Rediviva. The gender of the name is feminine.
Distribution. The species is only known from the western part of the winter rainfall region (Whitehead & Steiner 2001).
description: Published as part of Kuhlmann, Michael, Jürgensen, Lea-Sophie & Michez, Denis, 2020, Subgeneric classification of the bee genus Rediviva Friese (Hymenoptera: Apiformes: Melittidae), pp. 318-328 in Zootaxa 4790 (2) on page 322, DOI: 10.11646/zootaxa.4790.2.7, http://zenodo.org/record/3889561
Additional file 10: Figure S7. of Single-cell sequencing reveals karyotype heterogeneity in murine and human malignancies
Creators: name: Bakker, Bjorn
name: Taudt, Aaron
name: Belderbos, Mirjam
name: Porubsky, David
name: Spierings, Diana
name: Jong, Tristan De
name: Halsema, Nancy
name: Kazemier, Hinke
name: Hoekstra-Wakker, Karina
name: Bradley, Allan
name: Bont, Eveline De
name: Berg, Anke Van Den
name: Guryev, Victor
name: Lansdorp, Peter
name: ColomĂŠ-TatchĂŠ, Maria
name: Foijer, Floris
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: Developmental Biology
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Aneuploidy and heterogeneity per chromosome observed in a control thymus and T-ALLs. Aneuploidy and heterogeneity scores plotted per chromosomes of all T-ALLs examined in the study. Chromosomes indicated in green do not favour copy number change and show minimal heterogeneity. Chromosomes in blue show apparent random copy number changes. Red chromosomes favour copy number changes. (PDF 440 kb)
Additional file 2: Table S2. of Recombinase polymerase amplification assay for rapid detection of lumpy skin disease virus
Creators: name: Shalaby, Mohamed
name: El-Deeb, Ayman
name: El-Tholoth, Mohamed
name: Hoffmann, Donata
name: Claus-Peter Czerny
name: Hufert, Frank
name: Weidmann, Manfred
name: Wahed, Ahmed Abd El
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: 60506 Virology

description: Reproducibility of LSDV RPA assay using data sets of eight RPA assay runs using the DNA molecular standards. 107â  103 DNA molecules were detected 8 out of 8 runs; 102, 7/8 and 101, 2/8. (DOCX 54 kb)
Rediviva (Redivivoides) Michener 1981
Creators: name: Kuhlmann, Michael
name: Jürgensen, Lea-Sophie
name: Michez, Denis
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Melittidae
Rediviva

description: Rediviva (Redivivoides) Michener 1981, stat. nov.
Redivivoides Michener, 1981: 42. Type species: Redivivoides simulans Michener 1981, by original designation.
The seven species placed in this subgenus are listed in table 1.
Diagnosis. The subgenus Redivivoides comprises seven species (Table 1). Males are morphologically diverse and no apomorphies are known that distinguish them from those of other subgenera (see detailed discussion in Kuhlmann 2012b). Some can easily be mistaken for males of the subgenus Deriviva so they can only be assigned to a subgenus through the associated female.
Females lack the broadened hind tibia and basitarsus and the scopa does not consist of densely plumose pubescence for transporting floral oil that females of all other subgenera have. Instead the hind leg is narrow with the hind basitarsus only slightly broadened and the scopa consists of sparse simple bristles (Fig. 3c) (branched in other subgenera). Within the genus Rediviva, species of Redivivoides are unique because they do not collect floral oil for larval nourishment. Detailed descriptions of species including a discussion of morphology and biology were provided by Kuhlmann (2012b) and are not repeated here.
Distribution. Redivivoides species are known only from the winter rainfall region of western South Africa (Kuhlmann 2012b).
description: Published as part of Kuhlmann, Michael, Jürgensen, Lea-Sophie & Michez, Denis, 2020, Subgeneric classification of the bee genus Rediviva Friese (Hymenoptera: Apiformes: Melittidae), pp. 318-328 in Zootaxa 4790 (2) on page 322, DOI: 10.11646/zootaxa.4790.2.7, http://zenodo.org/record/3889561
Additional file 2: of Estimating the costs for the treatment of abortion complications in two public referral hospitals: a cross-sectional study in Ouagadougou, Burkina Faso
Creators: name: Ilboudo, Patrick
name: Greco, Giulia
name: Sundby, Johanne
name: Torsvik, Gaute
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: Science Policy
subject: 60506 Virology
subject: FOS: Biological sciences

description: This questionnaire was designed to collect indirect costs borne by hospital facilities in treating patients. (PDF 327Â kb)
Compsibidion graphicum
Creators: name: Monné, Miguel A.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Compsibidion
Compsibidion graphicum

description: 73. Compsibidion graphicum (Thomson, 1867)
Ibidion graphicum Thomson, 1867c: 135.
Octoplon graphicum; Gounelle, 1909: 667.
Compsibidion graphicum; Martins, 1969: 734.
Lylibaeum antennatum Thomson, 1867c: 156.
Distribution. Brazil (Pará, Goiás, Mato Grosso, Maranhão, Bahia, Minas Gerais, Espírito Santo, Rio de Janeiro, São Paulo, Paraná, Santa Catarina, Rio Grande do Sul), Ecuador, Bolivia (Beni, Santa Cruz, Tarija), Paraguay, Argentina (Jujuy, Salta, Tucumán, Misiones, Corrientes).
Reported from Serra do Caraça (Vulcano et al., 1980: 106).
description: Published as part of Monné, Miguel A., 2017, New species and new records of Cerambycidae (Insecta, Coleoptera) from RPPN Sanctuary of Caraça, Minas Gerais, Brazil, pp. 201-262 in Zootaxa 4319 (2) on page 218, DOI: 10.11646/zootaxa.4319.2.1, http://zenodo.org/record/889107
Rediviva Friese 1911
Creators: name: Kuhlmann, Michael
name: Jürgensen, Lea-Sophie
name: Michez, Denis
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Melittidae
Rediviva

description: Rediviva (s. str.) Friese 1911
Andrena (Rediviva) Friese, 1911: 671. Type species: Andrena peringueyi Friese 1911, by designation of Cockerell, 1931: 402 (transferred to Rediviva).
Notomelitta Cockerell, 1933: 128. Type species: Rediviva neliana Cockerell 1931, by original designation, monobasic.
The 18 species placed in this subgenus (clades B–E of Kahnt et al. 2017) are listed in table 1.
Diagnosis. This is the most speciose subgenus comprising 18 species (Table 1); R. transkeiana likely belongs here, too.
Males combine the following characters: S7 with usually large strigate translucent lateral lobes (lateral lobes either missing or smooth in other subgenera); median lobes long and narrow lanceolate to spatulate with pilosity mostly restricted to the apical third, longest hairs about half as long as length of median lobe (Figs 4 e–f) (in other subgenera median lobes much shorter, of different form and hairs shorter). In R. emdeorum and R. aurata median lobes are shorter (Whitehead & Steiner 2001: Figs 25B–C) and both have a vestigial pygidial plate (Whitehead & Steiner 2001: Fig. 44F) that is absent in all other species. Males of R. macgregori are divergent in that the median lobes are relatively short and completely covered with hair (Fig. 4d).
Females can be identified by a combination of the following character states: broadened hind tibia and basitarsus with the scopa consisting of densely plumose pubescence for transporting floral oil (Fig. 3f) (in Redivivoides hind tibia not broadened and without plumose pubescence), bidentate mandible (tridentate in Gigaviva) and inconspicuous yellowish apical tergal hair bands (Fig. 3b) (distinctly white in Albiviva) in combination with the absence of a scale-like projection on the distal-dorsal angle of the hind basitarsus (present in Albiviva and three species of Deriviva; R. intermedia, R. intermixta and R. rufipes). This set of characters also applies to females of two species in the subgenus Deriviva, namely R. colorata and R. saetigera, that cannot be distinguished from those of Rediviva s. str .. They can only be assigned to a subgenus through the associated male.
Distribution. Species of Rediviva (s. str.) occur throughout the range of the genus (Whitehead & Steiner 2001, Whitehead et al. 2008).
description: Published as part of Kuhlmann, Michael, Jürgensen, Lea-Sophie & Michez, Denis, 2020, Subgeneric classification of the bee genus Rediviva Friese (Hymenoptera: Apiformes: Melittidae), pp. 318-328 in Zootaxa 4790 (2) on page 326, DOI: 10.11646/zootaxa.4790.2.7, http://zenodo.org/record/3889561
Compsibidion quadrisignatum
Creators: name: Monné, Miguel A.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Compsibidion
Compsibidion quadrisignatum

description: 74. Compsibidion quadrisignatum (Thomson, 1865)
Octoplon quadrisignatum Thomson, 1865: 574.
Compsibidion quadrisignatum; Martins, 1969: 777.
Ibidion (Tropidion) amabile Thomson, 1867c: 138.
Distribution. Brazil (Goiás, Bahia, Minas Gerais, Espírito Santo, Rio de Janeiro, São Paulo, Paraná, Santa Catarina).
Reported from Serra do Caraça (Vulcano et al., 1980: 106).
description: Published as part of Monné, Miguel A., 2017, New species and new records of Cerambycidae (Insecta, Coleoptera) from RPPN Sanctuary of Caraça, Minas Gerais, Brazil, pp. 201-262 in Zootaxa 4319 (2) on page 218, DOI: 10.11646/zootaxa.4319.2.1, http://zenodo.org/record/889107
An automated multicolour fluorescence in situ hybridization workstation for the identification of clonally related cells
Creators: name: Dubrowski, Piotr
Publisher: name: University of British Columbia
Year: 2008

description: The methods presented in this study are aimed at the identification of subpopulations (clones) of genetically similar cells within tissue samples through measurement of loci-specific Fluorescence in-situ hybridization (FISH) spot signals for each nucleus and analyzing cell spatial distributions by way of Voronoi tessellation and Delaunay triangulation to robustly define cell neighbourhoods. The motivation for the system is to examine lung cancer patient for subpopulations of Non-Small Cell Lung Cancer (NSCLC) cells with biologically meaningful gene copy-number profiles: patterns of genetic alterations statistically associated with resistance to cis-platinum/vinorelbine doublet chemotherapy treatment. Current technologies for gene-copy number profiling rely on large amount of cellular material, which is not always available and suffers from limited sensitivity to only the most dominant clone in often heterogeneous samples. Thus, through the use of FISH, the detection of gene copy-numbers is possible in unprocessed tissues, allowing identification of specific tumour clones with biologically relevant patterns of genetic aberrations. The tissue-wide characterization of multiplexed loci-specific FISH signals, described herein, is achieved through a fully automated, multicolour fluorescence imaging microscope and object segmentation algorithms to identify cell nuclei and FISH spots within. Related tumour clones are identified through analysis of robustly defined cell neighbourhoods and cell-to-cell connections for regions of cells with homogenous and highly interconnected FISH spot signal characteristics. This study presents experiments which demonstrate the system’s ability to accurately quantify FISH spot signals in various tumour tissues and in up to 5 colours simultaneously or more through multiple rounds of FISH staining. Furthermore, the system’s FISH-based cell classification performance is evaluated at a sensitivity of 84% and specificity 81% and clonal identification algorithm results are determined to be comparable to clone delineation by a human-observer. Additionally, guidelines and procedures to perform anticipated, routine analysis experiments are established.
Compsibidion sommeri
Creators: name: Monné, Miguel A.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Compsibidion
Compsibidion sommeri

description: 75. Compsibidion sommeri (Thomson, 1865)
Ibidion sommeri Thomson, 1865: 573.
Ibidion (Compsibidion) sommeri; Thomson, 1867c: 150.
Compsa sommeri; Aurivillius, 1912: 110.
Compsibidion sommeri; Martins, 1965a: 92.
Distribution. Brazil (Goiás, Bahia, Minas Gerais, Espírito Santo, Rio de Janeiro, São Paulo, Paraná, Santa Catarina), Bolivia (Cochabamba), Argentina (Misiones).
Specimen examined. BRAZIL, Minas Gerais: Mun. Catas Altas, RPPN Serra do Caraça, 1350 m, male, 27– 31.X.2013, M.L. Monné & J.P. Botero.
description: Published as part of Monné, Miguel A., 2017, New species and new records of Cerambycidae (Insecta, Coleoptera) from RPPN Sanctuary of Caraça, Minas Gerais, Brazil, pp. 201-262 in Zootaxa 4319 (2) on page 218, DOI: 10.11646/zootaxa.4319.2.1, http://zenodo.org/record/889107
Prosthetops megacephalus Boheman 1851
Creators: name: Bilton, David T.
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Hydraenidae
Prosthetops
Prosthetops megacephalus

description: Prosthetops megacephalus (Boheman, 1851)
The species is common on Table Mountain, and adjacent areas, particularly in rockpools and seepage areas, as well as on larger rocks in streams. Most abundant in pools with some dark organic substrate.
Additional records: 19/ix/2008 Western Cape, Silvermine, gently sloping seepage over rock face beside M64 road—33, 2Ƥ; 27/ix/2008 Western Cape, Table Mountain, rockpools at head of Platteklip Gorge—abundant; 27/ ix/2009 Western Cape, Table Mountain, small stream above Valley of Isolation, river stones— 6 specimens; 27/ix/ 2008 Western Cape, Table Mountain, stream in Valley of the Red Gods—abundant on stones; 24/ix/2010 Western Cape, Table Mountain, stream in Echo Valley, ca. 800 m—abundant on stones; 24/ix/2010 Western Cape, Table Mountain, rock pools on central table below Maclear’s Beacon, 1,100 –1,200 m (Fig. 11 A & C)—abundant; 24/ix/ 2010 Western Cape, Table Mountain, rock pools on summit close to cable car station, ca. 1,000 m (Fig. 11 B)— abundant (adults +?larvae).
description: Published as part of Bilton, David T., 2013, Prosthetops wolfbergensis sp. nov. — a giant amongst the ' minute moss beetles', with new data on other members of the genus (Coleoptera, Hydraenidae), pp. 345-357 in Zootaxa 3666 (3) on page 354, DOI: 10.11646/zootaxa.3666.3.5, http://zenodo.org/record/222583
Additional file 1: of Relative efficacy of different types of exercise for treatment of knee and hip osteoarthritis: protocol for network meta-analysis of randomised controlled trials
Creators: name: Siew-Li Goh
name: Persson, Monica
name: Bhattacharya, Archan
name: Hall, Michelle
name: Doherty, Michael
name: Weiya Zhang
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology

description: PRISMA-P checklist. (DOCX 35 kb)
Compsibidion trichocerum
Creators: name: Monné, Miguel A.
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cerambycidae
Compsibidion
Compsibidion trichocerum

description: 76. Compsibidion trichocerum (Martins, 1962)
Octoplon trichocerum Martins, 1962c: 128.
Compsibidion trichocerum; Martins, 1969: 718.
Distribution. Brazil (Bahia, Minas Gerais, Rio de Janeiro). Specimen examined. BRAZIL, Minas Gerais: Mun. Catas Altas, RPPN Serra do Caraça, 1350 m, female, I.1970, F.M. Oliveira.
description: Published as part of Monné, Miguel A., 2017, New species and new records of Cerambycidae (Insecta, Coleoptera) from RPPN Sanctuary of Caraça, Minas Gerais, Brazil, pp. 201-262 in Zootaxa 4319 (2) on page 218, DOI: 10.11646/zootaxa.4319.2.1, http://zenodo.org/record/889107
Additional file 9: Figure S6. of Single-cell sequencing reveals karyotype heterogeneity in murine and human malignancies
Creators: name: Bakker, Bjorn
name: Taudt, Aaron
name: Belderbos, Mirjam
name: Porubsky, David
name: Spierings, Diana
name: Jong, Tristan De
name: Halsema, Nancy
name: Kazemier, Hinke
name: Hoekstra-Wakker, Karina
name: Bradley, Allan
name: Bont, Eveline De
name: Berg, Anke Van Den
name: Guryev, Victor
name: Lansdorp, Peter
name: ColomĂŠ-TatchĂŠ, Maria
name: Foijer, Floris
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Hematology
subject: 60506 Virology

description: Single-cell sequencing of early time point T-ALLs. Genome-wide copy number plots using ~1Â Mb bins for three thymuses harvested from 10-, 13- and 14-week-old mice, showing high levels of karyotype heterogeneity at 13 and 14Â weeks. (PDF 451 kb)