cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Tutankhamen cristatipes A. Milne-Edwards 1880
Creators: name: Mclay, Colin L.
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Malacostraca
Decapoda
Parthenopidae
Tutankhamen
Tutankhamen cristatipes

description: Tutankhamen cristatipes (A. Milne-Edwards, 1880)
(Figs 21, 22 A–D)
Mesorhoea cristatipes A. Milne-Edwards, 1880 a: pl. 31A figs 6–6c; 1880b: 352; 1880c: 5; A. Milne-Edwards & Bouvier 1923: 359, pl. 10 fig. 3.
Lambrus cristatipes — Rathbun 1898: 261.
Tutankhamen cristatipes — Rathbun 1925: 530, pl. 277 figs 3–5. – Ng et al., 2008: 132.
Type material. HOLOTYPE: male 16.9 x 13.5 mm (MCZ 8943), Blake Expedition 1878–79, stn 269, Caribbean Sea, Windward Is, off St. Vincent, 13º07’36”N, 61º05’36”W, 227 m, A. Agassiz coll., 3 Mar 1879. Diagnosis. As for generic diagnosis.
Distribution. Known only from the Caribbean Sea: Windward Is and Pourtales Plateau. Depth range 227–366 m (Rathbun, 1925).
Remarks. It is intriguing to note that the species closest in appearance to T. cristatipes is G. pteromerus from the Pacific. Both species have relatively smooth carapace surface, which are sub-triangular in shape, but G. pteromerus is relatively much wider CW/CL = 1.35–1.55 vs 1.25 for T. cristatipes. Both species have strong cristae on the upper and lower margins of the ambulatory legs and also have the proximal half of the cheliped merus outer margin dentate, but with the distal half being entire.
This poses some interesting questions about the relationship between Tutankhamen and Garthambrus. Garthambrus pteromerus is actually atypical of most Garthambrus species, having a relatively smooth carapace surface albeit somewhat pitted. But, most importantly, it has a relatively smooth and entire pterygostomial ridge, which is similar to that of Tutankhamen. However, it is not as expanded as that of T. cristatipes and never visible dorsally in G. pteromerus. As such, G. pteromerus may be possibly a link between Garthambrus and Tutankhamen. However, the easternmost record of G. pteromerus is in the Philippines, a considerable distance from the Caribbean Sea. Alternatively G. lacunosus, which is superficially very similar to G. pteromerus, from Hawaii, is another possible link. This could possibly due to the paucity of sampling because there are very few deep-sea samples from around the Hawaiian Is. Furthermore, very few specimens of T. cristatipes have been reported. The relationship between Garthambrus and Tutankhamen thus, remains unclear, but future discoveries and molecular studies could result in changes such that Tutankhamen includes species that have an Eastern Pacific/Caribbean distribution.
description: Published as part of Mclay, Colin L., 2009, Revision of the crab genus Garthambrus Ng, 1996, with the description of two new genera and discussion of the status of Tutankhamen Rathbun, 1925 (Crustacea: Brachyura: Parthenopidae), pp. 1-50 in Zootaxa 2122 on pages 40-41, DOI: 10.5281/zenodo.188125
Using linguistics to expand histories of interaction between Indigenous Australians and Islanders of Eastern Indonesia
Creators: name: Schapper, Antoinette
Publisher: name: Zenodo
Year: 2024
Subjects: Language contact
Australian languages
Austronesian languages

description: Contact with Makassan trepangers and their crews has left a significant mark on the languages of numerous Indigenous peoples of Australia’s Top End. This talk revisits the evidence for other linguistic influences from the Indonesian archipelago, much of which has been dismissed or downplayed. I seek to identify traces of language contact between speakers of Australian languages and speakers of Austronesian languages other than Makassans. Although fragmentary, the material I present suggests varied and geographically extensive contact between Indigenous Australians and Austronesians.
Additional file 2 of Pursuing healthy homeownership: an evaluation of the neighborhood health trajectories of shared equity homeowners
Creators: name: Gusoff, Geoffrey M.
name: Ramiller, Alex
name: Acolin, Arthur
name: Wang, Ruoniu
name: Zimmerman, Frederick J.
Publisher: name: figshare
Year: 2025
Subjects: subject: Sociology
subject: FOS: Sociology

description: Additional File 2 Results of difference-in-differences analysis of households entering SEH versus PSID households continuing to rent excluding Champlain Housing Trust Description of Data: Table displaying the difference-in-difference results comparing neighborhood health trajectories for households entering shared equity homeownership versus those of PSID households continuing to rent, with the largest shared equity homeownership entity (Champlain Housing Trust) excluded from the analysis.
Diactis cupola Shelley 1996
Creators: name: Stoev, Pavel
name: Sierwald, Petra
name: Billey, Amber
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Diplopoda
Callipodida
Schizopetalidae
Diactis
Diactis cupola

description: Diactis cupola Shelley, 1996
Diactis cupola Shelley, 1996, Ent. Scand., 27 (1): 43, figs 36–38. Male HT (USNM) from a site three miles north of Santa Monica, Los Angeles County, California, USA. Hoffman, 1999, Checklist Millip. North & Middle Am.: 203. Range: Santa Monica Mountains, southern California, USA (cf. Hoffman 1999).
description: Published as part of Stoev, Pavel, Sierwald, Petra & Billey, Amber, 2008, An annotated world catalogue of the millipede order Callipodida (Arthropoda: Diplopoda) *, pp. 1-50 in Zootaxa 1706 on page 37, DOI: 10.5281/zenodo.180904
Inference of continuous gene flow between species under misspecified models
Creators: name: Thawornwattana, Yuttapong
Publisher: name: Zenodo
Year: 2024

description: Simulated multilocus datasets used in

"Inference of continuous gene flow between species under misspecified models"by Yuttapong Thawornwattana, Tomas Flouri, James Mallet, and Ziheng Yang

Datasets:

1)  dset-2s: Two species case (fig. 1)630 datasets: 21 settings, 30 replicates each; datasets for the case n=64000 is provided separately due to large file sizes (msci-2s-AtoB-n64000.tar.gz)

2)  dset-4s-ABCD: Four species case (fig. 5)1,200 datasets: 12 settings (4 models A-D, 3 locus lengths each), 100 replicates each

3)  dset-4s-IOB: Four species case, wrong direction (fig. 6)1,800 datasets: two sets (C & D) of 9 combinations (among I, O, B), 100 replicates each

Other files:

4) ctl: Control files for running simulation and analyses in bpp
Diactis frondifera Loomis 1937
Creators: name: Stoev, Pavel
name: Sierwald, Petra
name: Billey, Amber
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Diplopoda
Callipodida
Schizopetalidae
Diactis
Diactis frondifera

description: Diactis frondifera Loomis, 1937
Diactis frondifera Loomis, 1937, Proc. U.S. Natl. Mus. Wash., 84 (3006): 116, fig. 17f. Male HT (USNM) from Torrey Pines near La Jolla, San Diego County, California, USA. Chamberlin & Hoffman, 1958, Bull. U.S. Natl. Mus., 212: 112. Shelley, 1996, Ent. Scand., 27 (1): 45, figs 44–48. Hoffman, 1999, Checklist Millip. North & Middle Am.: 204. Range: coastal region in San Diego and Los Angeles counties, California, USA (cf. Hoffman 1999).
description: Published as part of Stoev, Pavel, Sierwald, Petra & Billey, Amber, 2008, An annotated world catalogue of the millipede order Callipodida (Arthropoda: Diplopoda) *, pp. 1-50 in Zootaxa 1706 on page 37, DOI: 10.5281/zenodo.180904
Sinomonas flava NGS
Creators: name: Ko, Kwan Su
name: Cha, Chang-Jun
name: Im, Wan-Taek
name: Kim, Seung-Bum
name: Seong, Chi-Nam
name: Bae, Jin-Woo
name: Jahng, Kwangyeop
name: Cho, Jang-Cheon
name: Joh, Ki-seong
name: Lee, Soon Dong
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Bacteria
Actinobacteria
Actinobacteridae
Actinomycetales
Micrococcaceae
Sinomonas
Sinomonas flava

description: Description of Sinomonas flava NGS 3Y-15-2
Cells are Gram­staining­positive, non­flagellated and rod-shaped. Colonies are circular, raised, entire and pale-yellow-colored after 2 days on R2A at 30°C. Positive for nitrate reduction, esculin hydrolysis and β­galactosidase in API 20NE but negative for indole production, glucose fermentation, arginine dihydrolase, urease and gelatinase. D-Glucose, D-mannitol, D-mannose, D-maltose, gluconate, malate, citrate and phenylacetate are utilized. Does not utilize L-arabinose, N-acetyl-glucosamine, caprate and adipate. Strain NGS 3Y-15-2 (= NIBRBA0000114885) has been isolated from Ginseng soil, Anseong, Korea.
Description of Diaminobutyricibacter tongyongensis R1-6
Cells are Gram­staining­positive, non­flagellated, nonpigmented and rod-shaped. Colonies are circular, convex, entire and yellow-colored on R2A at 30°C. Positive for esculin hydrolysis and β­galactosidase in API 20NE but negative for nitrate reduction, indole production, glucose fermentation, arginine dihydrolase, urease and gelatinase. D-Glucose, L-arabinose, D-mannitol, Dmannose, N-acetyl-glucosamine, D-maltose, gluconate, caprate, adipate, malate, citrate and phenylacetate are not utilized. Strain R1-6 (= NIBRBA0000114812) has been isolated from soil, Daejeon, Korea.
description: Published as part of Ko, Kwan Su, Cha, Chang-Jun, Im, Wan-Taek, Kim, Seung-Bum, Seong, Chi-Nam, Bae, Jin-Woo, Jahng, Kwangyeop, Cho, Jang-Cheon, Joh, Ki-seong & Lee, Soon Dong, 2017, A report of 34 unrecorded bacterial species in Korea, belonging to the Actinobacteria, pp. 1-14 in Journal of Species Research 6 (1) on page 11, DOI: 10.12651/JSR.2017.6.1.001, http://zenodo.org/record/8120377
Additional file 3 of Pursuing healthy homeownership: an evaluation of the neighborhood health trajectories of shared equity homeowners
Creators: name: Gusoff, Geoffrey M.
name: Ramiller, Alex
name: Acolin, Arthur
name: Wang, Ruoniu
name: Zimmerman, Frederick J.
Publisher: name: figshare
Year: 2025
Subjects: subject: Sociology
subject: FOS: Sociology

description: Additional File 3 Results of difference-in-differences analysis of PSID households entering traditional homeownership versus PSID households continuing to rent Description of Data: Table displaying the difference-in-difference results comparing neighborhood health trajectories for PSID households entering traditional homeownership versus those of PSID households continuing to rent.
Additional file 4 of Pursuing healthy homeownership: an evaluation of the neighborhood health trajectories of shared equity homeowners
Creators: name: Gusoff, Geoffrey M.
name: Ramiller, Alex
name: Acolin, Arthur
name: Wang, Ruoniu
name: Zimmerman, Frederick J.
Publisher: name: figshare
Year: 2025
Subjects: subject: Sociology
subject: FOS: Sociology

description: Additional File 4 Assessment of variable stability over time. Description of Data: Table displaying the intraclass correlation (ICC) between various waves of data for the study variables for which multiple years of data were available (food access and the socioeconomic domain of the social vulnerability index).
Luteimicrobium subarcticum
Creators: name: Ko, Kwan Su
name: Cha, Chang-Jun
name: Im, Wan-Taek
name: Kim, Seung-Bum
name: Seong, Chi-Nam
name: Bae, Jin-Woo
name: Jahng, Kwangyeop
name: Cho, Jang-Cheon
name: Joh, Ki-seong
name: Lee, Soon Dong
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Bacteria
Actinobacteria
Actinobacteridae
Actinomycetales
Luteimicrobium
Luteimicrobium subarcticum

description: Description of Luteimicrobium subarcticum N1-9
Cells are Gram­staining­positive, non­flagellated, nonpigmented and rod-coccus-shaped. Colonies are circular, convex, entire and white-colored on NA at 30°C. Positive for esculin hydrolysis and β­galactosidase in API 20NE, weakly positive for nitrate reduction and glucose fermentation but negative for indole production, arginine dihydrolase, urease and gelatinase. D-Glucose, Larabinose, D-mannitol, D-mannose, N-acetyl-glucosamine, D-maltose, gluconate, caprate, adipate, malate, citrate and phenylacetate are not utilized. Strain N1-9 (= NIBRBA0000114811) has been isolated from soil, Daejeon, Korea.
description: Published as part of Ko, Kwan Su, Cha, Chang-Jun, Im, Wan-Taek, Kim, Seung-Bum, Seong, Chi-Nam, Bae, Jin-Woo, Jahng, Kwangyeop, Cho, Jang-Cheon, Joh, Ki-seong & Lee, Soon Dong, 2017, A report of 34 unrecorded bacterial species in Korea, belonging to the Actinobacteria, pp. 1-14 in Journal of Species Research 6 (1) on page 11, DOI: 10.12651/JSR.2017.6.1.001, http://zenodo.org/record/8120377
Diactis jacinto Shelley 1996
Creators: name: Stoev, Pavel
name: Sierwald, Petra
name: Billey, Amber
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Diplopoda
Callipodida
Schizopetalidae
Diactis
Diactis jacinto

description: Diactis jacinto Shelley, 1996
Diactis jacinto Shelley, 1996, Ent. Scand., 27 (1): 46, figs 49–51. Male HT (USNM) from a site along highway 243 in the San Jacinto Mountains, south of Banning, Riverside County, California, USA. Hoffman, 1999, Checklist Millip. North & Middle Am.: 204.
Range: known only from the San Jacinto Mountains, Riverside County, California, USA.
New records: 2 MM, 4 FF, ca. 113 juv. of different age, USA, CA: Riverside Co., San Jacinto Mts., Vista Grande +/- 20 km NW Idyllwild, 30º50.5’N, 116º48.8’W; 1450 m, scrub oak, forest litter and rotted rat nest stiks, 26.iii.1999, S. & J. Peck leg. (FMNH).
description: Published as part of Stoev, Pavel, Sierwald, Petra & Billey, Amber, 2008, An annotated world catalogue of the millipede order Callipodida (Arthropoda: Diplopoda) *, pp. 1-50 in Zootaxa 1706 on page 37, DOI: 10.5281/zenodo.180904
Lista variegata
Creators: name: Rong, Hua
name: Wang, Yiping
name: Qi, Mujie
name: Li, Houhun
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Pyralidae
Lista
Lista variegata

description: Lista variegata (Moore, 1888)
(Figs 20, 36, 48)
Scopocera variegata Moore, 1888: 203. TL: India.
Lista variegata (Moore): Solis, 1992: 283.
Material examined. CHINA, Xizang (Tibet) Autonomous Region: 1 ♂, 1 ♀, Bomi County, 2800 m, 19.VIII.2003, HJ Xue and XP Wang, slide Nos. WYP05207 ♂, WYP05096 ♀; 1 ♀, Birishenshan, Bayi, Linzhi County, 3245 m, 28.VII.2010, coll. HH Li et al.; 7 ♂, 2 ♀, Lulang, Bayi County, Linzhi, 3065 m, 4.VIII.2010, coll. HH Li et al., slide Nos. RH15157 ♂, RH15158 ♀; 7 ♂, 2 ♀, Baishulin, Bayi, Linzhi County, 3100–3170 m, 7–13.VIII.2010, coll. HH Li et al.; 1 ♀, Bayi, Linzhi County, 3000 m, 1.VII.2013, coll. JW Li.
Adult (Fig. 20) wingspan 29.0–36.0 mm.
Diagnosis. This species is characterized by the quadrate uncus with two spine-shaped processes medially, valva with the costa swollen at distal 2/5 on the dorsal margin, dorsal process of the sacculus tooth-shaped, and sclerotized subtriangular median plate serrated slightly on the outer margin (Fig. 36). It is similar to L. yunnanensis sp. nov. in wing pattern and male genitalia, and the differences between them are stated in the diagnosis of L. yunnanensis sp. nov.
Distribution. China (Tibet), India.
description: Published as part of Rong, Hua, Wang, Yiping, Qi, Mujie & Li, Houhun, 2021, Taxonomic review of the genus Lista Walker, 1859 from China (Lepidoptera, Pyralidae, Epipaschiinae), with descriptions of five new species, pp. 237-262 in Zootaxa 5081 (2) on pages 259-260, DOI: 10.11646/zootaxa.5081.2.4, http://zenodo.org/record/5771739
Nilothauma Kieffer
Creators: name: Mendes, Humberto Fonseca
name: Andersen, Trond
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Chironomidae
Nilothauma

description: Key to the pupae of Neotropical Nilothauma Kieffer
1. Thoracic horn with 5–6 branches; tergite VII with anterior and posterior shagreen patches or only posterior shagreen patch; tergite VIII with anterior and posterior shagreen patches. ................................................................................ 2
- Thoracic horn with 8 branches; tergites VII–VIII with anterior shagreen patches only (Soponis 1987: 15, Figs 6–11). ............................................................................................................................ Nilothauma reissi (Soponis) comb. n.
2. Tergite VIII with anterior and posterior patches of shagreen connected ..................................................................... 3
- Tergite VIII with anterior patch of shagreen completely separated from posterior patch (Wiedenbrug 2000: 248, Fig. 96) ................................................................................................................ Nilothauma -complex spec. 1 Wiedenbrug
3. Tergite VIII with anterior and posterior patches of shagreen connected by narrow band of fine shagreen. ............... 4
- Tergite VIII with anterior and posterior patches of shagreen completely fused (Figs 45–48). ..................................... ................................................................................................................................... Nilothauma matogrossense sp. n.
4. Tergite VII with anterior and posterior patches of shagreen connected by narrow band of fine shagreen (Figs 75–79). ............................................................................................................................................................ Nilothauma sp. 1.
- Tergite VII with posterior patch of shagreen only (Figs 13–16). ................................. Nilothauma aripuanense sp. n.
description: Published as part of Mendes, Humberto Fonseca & Andersen, Trond, 2009, Neotropical Nilothauma Kieffer, 1921, with the description of thirteen new species (Diptera: Chironomidae), pp. 1-45 in Zootaxa 2063 on page 13, DOI: 10.5281/zenodo.186868
Additional file 1 of Relationship between dietary fiber physicochemical properties and feedstuff fermentation characteristics and their effects on nutrient utilization, energy metabolism, and gut microbiota in growing pigs
Creators: name: Yong, Feng
name: Liu, Bo
name: Li, Huijuan
name: Hao, Houxu
name: Fan, Yueli
name: Datsomor, Osmond
name: Han, Rui
name: Jiang, Hailong
name: Che, Dongsheng
Publisher: name: figshare
Year: 2025
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Computational Biology

description: Additional file 1: Table S1. In vitro ileal digestibility of dry matter and gross energy of different feedstuffs. Table S2. Effects of dietary fiber structure and apparent viscosity on α-diversity of the fecal microbial community. Fig. S1. Production of short-chain fatty acid at various time points during in vitro fermentation of different feedstuffs. Fig. S2. Gas production at various time points during in vitro fermentation of different feedstuffs.
Design of Unitless Normalized Measure of Nonlinearity for State Estimation
Creators: name: Straka, Ondřej
name: Havlík, Jindřich
Publisher: name: arXiv
Year: 2024
Subjects: subject: Systems and Control (eess.SY)
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: The paper deals with measures of nonlinearity. In state estimation, they are utilized i) to select a suitable state estimation algorithm by assessing the nonlinearity of a system model, ii) to adapt the estimation algorithm structure or parameters, or iii) to indicate the possible effect of strong nonlinearity that leads to estimate credibility loss. This paper summarizes the state of the art of nonlinearity measures, focusing on the mean-square-error-based measure of nonlinearity. Its weak point related to unit selection is illustrated, and based on this, requirements for a new measure of nonlinearity are formulated. A new nonlinearity measure that is both unitless and normalized is designed. Its properties are demonstrated using numerical tracking experiments.
description: Accepted at FUSION 2024 conference
Kribbella antibiotica RK
Creators: name: Ko, Kwan Su
name: Cha, Chang-Jun
name: Im, Wan-Taek
name: Kim, Seung-Bum
name: Seong, Chi-Nam
name: Bae, Jin-Woo
name: Jahng, Kwangyeop
name: Cho, Jang-Cheon
name: Joh, Ki-seong
name: Lee, Soon Dong
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Bacteria
Actinobacteria
Actinobacteridae
Actinomycetales
Nocardioidaceae
Kribbella
Kribbella antibiotica

description: Description of Kribbella antibiotica RK 4Y-2-4
Cells are Gram­staining­positive, non­flagellated and rod­shaped. Colonies are punctiform, dry, flat and whitecolored after 2 days on R2A at 30°C. Positive for urease, esculin hydrolysis, gelatinase and β­galactosidase in API 20NE but negative for nitrate reduction, indole production, glucose fermentation and arginine dihydrolase. L-Arabinose, D-mannitol, D-mannose, N-acetyl-glucosamine and D-maltose are utilized. Does not utilize D-glucose, gluconate, caprate, adipate, malate, citrate and phenylacetate. Strain RK 4Y-2-4 (= NIBRBA0000114877) has been isolated from ginseng soil, Anseong, Korea.
description: Published as part of Ko, Kwan Su, Cha, Chang-Jun, Im, Wan-Taek, Kim, Seung-Bum, Seong, Chi-Nam, Bae, Jin-Woo, Jahng, Kwangyeop, Cho, Jang-Cheon, Joh, Ki-seong & Lee, Soon Dong, 2017, A report of 34 unrecorded bacterial species in Korea, belonging to the Actinobacteria, pp. 1-14 in Journal of Species Research 6 (1) on page 11, DOI: 10.12651/JSR.2017.6.1.001, http://zenodo.org/record/8120377
OLIY TA'LIM MUASSASALARI SPORT TO'GARAKLARIDA SHUG'ULLANUVCHI TALABA-YOSHLARNI FUNKSIONAL KO'RSATKICHLARI. YUQT, LAKTAT VA CHIDAMLILIK UCHUN MASHG'ULOTLAR
Creators: name: Odilov, F.R.
Publisher: name: Zenodo
Year: 2024

description: Har qanday jismoniy yuklama bajarganda sport bilam shug‘ullanadigan energiya sarfini ishlanishini taqozo etadi. Organizmimizga turli xil energiya bilan ta’minlovchi tuzilmalar mavjud, ularning xar biri o‘ziga xos xususiyatlarga ega. Organizmda energiya ta’minoti tamoyillarini yaxshi bilgan taqdirdagina optimal mashg‘ulot dasturini tuzish va shu asosida mashg‘ulotni tashkil qilish imkoni bo‘ladi. Agar organizmga quloq solib ko‘rilsa, unda ayni daqiqada qaysi biri ishlamayotgan mushaklarni energiya bilan ta’minlash uchun ishga tushganligini yetarlicha aniq bilib olish mumkin. Biroq sport amaliyotida ko‘pchilik sportchilar o‘z organizmida sodir bo‘ladigan o‘zgarishlarga e’tibor berishmaydi. Biroq ushbu o‘zgarishlarga asoslanib o‘zlarining mashg‘ulot dasturlariga o‘zgartirishlar kiritishlari mumkin bo‘lar edi. Ko‘pgina sportchilar juda jadal yoki o‘ta bir xilda mashq qiladilar ayrimlari o‘ta past jadallikda mashg‘ulot o‘tkazadilar. Nima bo‘lganda ham, ular ham boshqalar ham hech qachon istalgan natijaga erisha olmaydilar. Mashg‘ulotning optimal shiddatini ikki xil usul bilan: qondagi laktat (sut kislotasi) darajasi o‘zgarishini aniqlash yordamida yoki yurak qisqarishi tezligini (yuqt) aniqlash orqali mashg‘ulotni  boshqarish mumkin. Ikkita usuldan yoki ulardan biridan foydalanib, sprotchilar ko‘pincha mashg‘ulotlar hajmi va shiddati kichik bo‘lgan sharoitda ham yuqori natijalarga erishadilar.
Nocardioides albus RS
Creators: name: Ko, Kwan Su
name: Cha, Chang-Jun
name: Im, Wan-Taek
name: Kim, Seung-Bum
name: Seong, Chi-Nam
name: Bae, Jin-Woo
name: Jahng, Kwangyeop
name: Cho, Jang-Cheon
name: Joh, Ki-seong
name: Lee, Soon Dong
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Bacteria
Actinobacteria
Actinobacteridae
Actinomycetales
Nocardioidaceae
Nocardioides
Nocardioides albus

description: Description of Nocardioides albus RS 4Y-2-4
Cells are Gram­staining­positive, non­flagellated and rod-shaped. Colonies are circular, convex, raised and white-colored after 2 days on ISP4 at 30°C. Positive for esculin hydrolysis, gelatinase and β­galactosidase in API 20NE but negative for nitrate reduction, indole production, glucose fermentation, arginine dihydrolase and urease. D-Glucose, L-arabinose, D-mannitol, D-mannose, N-acetyl-glucosamine, gluconate, adipate and malate, citrate are utilized. Does not utilize D-maltose, caprate and phenylacetate. Strain RS 4Y-2-4 (= NIBRBA 0000114880) has been isolated from ginseng soil, Anseong, Korea.
description: Published as part of Ko, Kwan Su, Cha, Chang-Jun, Im, Wan-Taek, Kim, Seung-Bum, Seong, Chi-Nam, Bae, Jin-Woo, Jahng, Kwangyeop, Cho, Jang-Cheon, Joh, Ki-seong & Lee, Soon Dong, 2017, A report of 34 unrecorded bacterial species in Korea, belonging to the Actinobacteria, pp. 1-14 in Journal of Species Research 6 (1) on page 11, DOI: 10.12651/JSR.2017.6.1.001, http://zenodo.org/record/8120377
Enhancing Retail Sales Forecasting with Optimized Machine Learning Models
Creators: name: Ganguly, Priyam
name: Mukherjee, Isha
Publisher: name: arXiv
Year: 2024
Subjects: subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: In retail sales forecasting, accurately predicting future sales is crucial for inventory management and strategic planning. Traditional methods like LR often fall short due to the complexity of sales data, which includes seasonality and numerous product families. Recent advancements in machine learning (ML) provide more robust alternatives. This research benefits from the power of ML, particularly Random Forest (RF), Gradient Boosting (GB), Support Vector Regression (SVR), and XGBoost, to improve prediction accuracy. Despite advancements, a significant gap exists in handling complex datasets with high seasonality and multiple product families. The proposed solution involves implementing and optimizing a RF model, leveraging hyperparameter tuning through randomized search cross-validation. This approach addresses the complexities of the dataset, capturing intricate patterns that traditional methods miss. The optimized RF model achieved an R-squared value of 0.945, substantially higher than the initial RF model and traditional LR, which had an R-squared of 0.531. The model reduced the root mean squared logarithmic error (RMSLE) to 1.172, demonstrating its superior predictive capability. The optimized RF model did better than cutting-edge models like Gradient Boosting (R-squared: 0.942), SVR (R-squared: 0.940), and XGBoost (R-squared: 0.939), with more minor mean squared error (MSE) and mean absolute error (MAE) numbers. The results demonstrate that the optimized RF model excels in forecasting retail sales, handling the datasets complexity with higher accuracy and reliability. This research highlights the importance of advanced ML techniques in predictive analytics, offering a significant improvement over traditional methods and other contemporary models.
description: 2024 4th International Conference on Sustainable Expert Systems (ICSES)
Diactis procera Shelley 1996
Creators: name: Stoev, Pavel
name: Sierwald, Petra
name: Billey, Amber
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Diplopoda
Callipodida
Schizopetalidae
Diactis
Diactis procera

description: Diactis procera Shelley, 1996
Diactis procera Shelley, 1996, Ent. Scand., 27 (1): 41, figs 28–31. Male HT (LACM) from Silverado Canyon, ca. 11 miles north of Mission Viejo, Orange County, California, USA. Hoffman, 1999, Checklist Millip. North & Middle Am.: 204.
Range: known only from the type locality.
description: Published as part of Stoev, Pavel, Sierwald, Petra & Billey, Amber, 2008, An annotated world catalogue of the millipede order Callipodida (Arthropoda: Diplopoda) *, pp. 1-50 in Zootaxa 1706 on page 37, DOI: 10.5281/zenodo.180904
Kutzneria buriramensis RMD
Creators: name: Ko, Kwan Su
name: Cha, Chang-Jun
name: Im, Wan-Taek
name: Kim, Seung-Bum
name: Seong, Chi-Nam
name: Bae, Jin-Woo
name: Jahng, Kwangyeop
name: Cho, Jang-Cheon
name: Joh, Ki-seong
name: Lee, Soon Dong
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Bacteria
Actinobacteria
Actinobacteridae
Actinomycetales
Pseudonocardiaceae
Kutzneria
Kutzneria buriramensis

description: Description of Kutzneria buriramensis RMD 3Y-3-1
Cells are Gram-staining-positive, non-flagellated and rod-shaped. Colonies are undulate, dry, flat and white-colored after 2 days on ISP4 at 30°C. Positive for β­galactosidase in API 20NE but negative for nitrate reduction, indole production, glucose fermentation, arginine dihydrolase, urease, esculin hydrolysis and gelatinase. L-Arabinose and malate are utilized. Does not utilize D-glucose, D-mannitol, D-mannose, N-acetyl-glucosamine, D-maltose, gluconate, caprate, adipate, citrate and phenylacetate. Strain RMD 3Y-3-1 (= NIBRBA 0000114879) has been isolated from ginseng soil, Anseong, Korea.
description: Published as part of Ko, Kwan Su, Cha, Chang-Jun, Im, Wan-Taek, Kim, Seung-Bum, Seong, Chi-Nam, Bae, Jin-Woo, Jahng, Kwangyeop, Cho, Jang-Cheon, Joh, Ki-seong & Lee, Soon Dong, 2017, A report of 34 unrecorded bacterial species in Korea, belonging to the Actinobacteria, pp. 1-14 in Journal of Species Research 6 (1) on page 12, DOI: 10.12651/JSR.2017.6.1.001, http://zenodo.org/record/8120377
Eudorylaimus undetermined Andrassy 1959
Creators: name: Rossen, H. v.
name: Loof, P. A. A.
Publisher: name: Zenodo
Year: 1962
Subjects: Biodiversity
Taxonomy
Animalia
Nematoda
Enoplea
Dorylaimida
Qudsianematidae
Eudorylaimus
Eudorylaimus undetermined

description: 25. Eudorylaimus (?) spec.
(Fig. 3).
Twee wijfjes in monster 3. Maten: L = 1.53- 1.85 mm; a = 30.9-31.8; b = 3.4-3.6; c = 37.2-38.1; V = 50.6-51.1; G 1 = 8.1 - 8.7; G 2 = 8.3-9.7. Lichaam naar voren versmald, breedte lipstreek 1 /3 -2/5 van lichaamsdiameter ter hoogte van de basis van de oesophagus. Subcuticula met fijne dwarsstreping. Laterale cuticulaporen in 2 rijen; voor de vulva 25-28 poren, achter de vulva 20-26. Bovendien is er een rij ventrale poren aanwezig (24 -25 vóór, 12- 14 achter de vulva) benevens een aantal dorsale poren in de nekstreek. Kopeinde iets getordeerd, daardoor zijn de amphiden niet goed zichtbaar Lipstreek afgezet door een diepe insnoering; lippen goed ontwikkeld met 2 kransen van grote papillen. Geleidering enkel, ietwat onregelmatig van vorm. Stekel 1.2 x zo lang als de breedte van de lipstreek, de opening beslaat ongeveer 3 /4 van zijn lengte. Oesophagus geleidelijk verbreed ongeveer in bet midden. Cardia met duidelijke klieren. Vulva dwars, vagina met twee gesclerotiseerde stukken. Rectum 1.2 x anale lichaamsdiameter, prerectum ongeveer tweemaal zo lang als rectum. Staart 1 6 x anale lichaamsdiameter lang, kegelvormig met afgeronde top. Ovaria kort, teruggeslagen over 2/3 of meer van hun lengte.
 Door de cuticulaporen en de vorm van de cardia herinnert deze soort aan  Drepanodorus laetificans  (Andrássy, 1956), die echter een relatief veel smallere lipstreek beeft.
description: Published as part of Rossen, H. v. & Loof, P. A. A., 1962, Notities Over Het Voorkomen Van Enkele Aaltjessoorten In Zweden, pp. 185-188 in Verslagen en Mededelingen Plantenziektenkundige Dienst Wageningen 136 on page 187, DOI: 10.5281/zenodo.10845163
Additional file 1 of Lentivirus-based production of human chimeric antigen receptor macrophages from peripheral blood
Creators: name: Choi, Ji U
name: Kim, Yeongrin
name: Lee, Da Yeon
name: Park, Jin Song
name: Jeun, Moonjung
name: Lee, Heung Kyoung
name: Park, Chi Hoon
Publisher: name: figshare
Year: 2025
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Mental Health
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Supplementary Material 1.
Phase stability in the Hf-N and Zr-N systems
Creators: name: Li, Jonathan
name: Ober, Derick
name: Van der Ven, Anton
Publisher: name: arXiv
Year: 2024
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Hf and Zr nitrides are promising compounds for many technologically important areas, including high temperature structural applications, quantum computing and solar/optical applications. This article reports on a comprehensive first-principles statistical mechanics study of phase stability in the Hf-N and Zr-N binary systems. A high solubility of nitrogen in the hcp forms of Hf and Zr is predicted. The rocksalt forms of HfN and ZrN can also tolerate a high degree of off-stoichiometry through the introduction of nitrogen and metal vacancies. The Hf-N binary favors a family of stacking faulted parent crystal structures at intermediate nitrogen concentrations that host a unique form of short-range order among nitrogen interstitials and vacancies. These phases can accommodate some degree of configurational entropy and remain ordered to temperatures as high as 1200K.
Kitasatospora paranensis NU
Creators: name: Ko, Kwan Su
name: Cha, Chang-Jun
name: Im, Wan-Taek
name: Kim, Seung-Bum
name: Seong, Chi-Nam
name: Bae, Jin-Woo
name: Jahng, Kwangyeop
name: Cho, Jang-Cheon
name: Joh, Ki-seong
name: Lee, Soon Dong
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Bacteria
Actinobacteria
Actinobacteridae
Actinomycetales
Streptomycetaceae
Kitasatospora
Kitasatospora paranensis

description: Description of Kitasatospora paranensis NU 4Y-9-4
Cells are Gram­staining­positive, non­flagellated and coccus­shaped. Colonies are circular, dry, flat and browncolored after 3 days on ISP4 at 30°C. Positive for gelatinase and β­galactosidase in API 20NE but negative for nitrate reduction, indole production, glucose fermentation, arginine dihydrolase, urease and esculin hydrolysis. D-Glucose, L-arabinose, D-mannitol, D-mannose, Nacetyl-glucosamine, D-maltose, gluconate, adipate, malate, citrate and phenylacetate are utilized. Does not utilize caprate. Strain NU 4Y-9-4 (= NIBRBA0000114875) has been isolated from ginseng soil, Anseong, Korea.
description: Published as part of Ko, Kwan Su, Cha, Chang-Jun, Im, Wan-Taek, Kim, Seung-Bum, Seong, Chi-Nam, Bae, Jin-Woo, Jahng, Kwangyeop, Cho, Jang-Cheon, Joh, Ki-seong & Lee, Soon Dong, 2017, A report of 34 unrecorded bacterial species in Korea, belonging to the Actinobacteria, pp. 1-14 in Journal of Species Research 6 (1) on page 12, DOI: 10.12651/JSR.2017.6.1.001, http://zenodo.org/record/8120377
Tylencholaimus brevicaudatus Tarjan 1956
Creators: name: Rossen, H. v.
name: Loof, P. A. A.
Publisher: name: Zenodo
Year: 1962
Subjects: Biodiversity
Taxonomy
Animalia
Nematoda
Chromadorea
Rhabditida
Hemicycliophoridae
Tylencholaimus
Tylencholaimus brevicaudatus

description: 26. Tylencholaimus brevicaudatus (Tarjan,1953).
Monsters 5 en 9. Deze soort is reeds uit Europa bekend (Loof, 1961, Coomans, 1962).
description: Published as part of Rossen, H. v. & Loof, P. A. A., 1962, Notities Over Het Voorkomen Van Enkele Aaltjessoorten In Zweden, pp. 185-188 in Verslagen en Mededelingen Plantenziektenkundige Dienst Wageningen 136 on page 187, DOI: 10.5281/zenodo.10845163
Diactis soleata Loomis 1996
Creators: name: Stoev, Pavel
name: Sierwald, Petra
name: Billey, Amber
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Diplopoda
Callipodida
Schizopetalidae
Diactis
Diactis soleata

description: Diactis soleata Loomis, 1996
Diactis soleata Loomis, 1937, Proc. U.S. Natl. Mus. Wash., Washington 84: 113, figs 17b–e, pl. 3, fig. 1. Male HT (USNM) from along Temescal Canyon Road, ca. 10.2 miles south of Corona, Riverside County, California, USA. Chamberlin & Hoffman, 1958, Bull. U.S. Natl. Mus., 212: 113. Shelley, 1996, Ent. Scand., 27 (1): 41, figs 23–27. Hoffman, 1999, Checklist Millip. North & Middle Am.: 204.
Range: three localities in Riverside and Los Angeles counties, California, USA (cf. Hoffman 1999).
description: Published as part of Stoev, Pavel, Sierwald, Petra & Billey, Amber, 2008, An annotated world catalogue of the millipede order Callipodida (Arthropoda: Diplopoda) *, pp. 1-50 in Zootaxa 1706 on page 37, DOI: 10.5281/zenodo.180904
Evaluation of Protein Extraction Methods for Metaproteomic Analyses of Root-Associated Microbes.
Creators: name: Kleiner, Manuel
name: Dangl, Jeffery L
name: Salvato, Fernanda
name: Finkel, Omri M
name: Vintila, Simina
Publisher: name: Scientific Societies
Year: 2022

description:
Metaproteomics is a powerful tool for the characterization of metabolism, physiology, and functional interactions in microbial communities, including plant-associated microbiota. However, the metaproteomic methods that have been used to study plant-associated microbiota are very laborious and require large amounts of plant tissue, hindering wider application of these methods. We optimized and evaluated different protein extraction methods for metaproteomics of plant-associated microbiota in two different plant species (Arabidopsis and maize). Our main goal was to identify a method that would work with low amounts of input material (40 to 70 mg) and that would maximize the number of identified microbial proteins. We tested eight protocols, each comprising a different combination of physical lysis method, extraction buffer, and cell-enrichment method on roots from plants grown with synthetic microbial communities. We assessed the performance of the extraction protocols by liquid chromatography-tandem mass spectrometry-based metaproteomics and found that the optimal extraction method differed between the two species. For Arabidopsis roots, protein extraction by beating whole roots with small beads provided the greatest number of identified microbial proteins and improved the identification of proteins from gram-positive bacteria. For maize, vortexing root pieces in the presence of large glass beads yielded the greatest number of microbial proteins identified. Based on these data, we recommend the use of these two methods for metaproteomics with Arabidopsis and maize. Furthermore, detailed descriptions of the eight tested protocols will enable future optimization of protein extraction for metaproteomics in other dicot and monocot plants. [Formula: see text] Copyright © 2022 The Author(s). This is an open access article distributed under the CC BY 4.0 International license.
Allelic variation in the Arabidopsis TNL CHS3/CSA1 immune receptor pair reveals two functional cell-death regulatory modes
Creators: name: Wan, Li
name: Furzer, Oliver J
name: Kim, Nak Hyun
name: Dangl, Jeffery L
name: Jacob, Pierre
name: Yang, Yu
name: Cevik, Volkan
Publisher: name: Elsevier
Year: 2022

description:
Some plant NLR immune receptors are encoded in head-to-head "sensor-executor" pairs that function together. Alleles of the NLR pair CHS3/CSA1 form three clades. The clade 1 sensor CHS3 contains an integrated domain (ID) with homology to regulatory domains, which is lacking in clades 2 and 3. In this study, we defined two cell-death regulatory modes for CHS3/CSA1 pairs. One is mediated by ID domain on clade 1 CHS3, and the other relies on CHS3/CSA1 pairs from all clades detecting perturbation of an associated pattern-recognition receptor (PRR) co-receptor. Our data support the hypothesis that an ancestral Arabidopsis CHS3/CSA1 pair gained a second recognition specificity and regulatory mechanism through ID acquisition while retaining its original specificity as a "guard" against PRR co-receptor perturbation. This likely comes with a cost, since both ID and non-ID alleles of the pair persist in diverse Arabidopsis populations through balancing selection.
Glossoscolecidae Michaelsen 1900
Creators: name: Feijoo, Alexander
name: Zuluaga, Luis Fernando
name: Molina, Ligia Janneth
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Clitellata
Haplotaxida
Glossoscolecidae

description: Family Glossoscolecidae Michaelsen, 1900
sensu James & Davidson (2012)
description: Published as part of Feijoo, Alexander, Zuluaga, Luis Fernando & Molina, Ligia Janneth, 2018, New species and records of earthworms (Annelida, Oligochaeta) in plantain cropping systems in Colombia's coffee-growing region, pp. 448-458 in Zootaxa 4496 (1) on page 449, DOI: 10.11646/zootaxa.4496.1.34, http://zenodo.org/record/1446963
Streptomyces drozdowiczii BBT
Creators: name: Ko, Kwan Su
name: Cha, Chang-Jun
name: Im, Wan-Taek
name: Kim, Seung-Bum
name: Seong, Chi-Nam
name: Bae, Jin-Woo
name: Jahng, Kwangyeop
name: Cho, Jang-Cheon
name: Joh, Ki-seong
name: Lee, Soon Dong
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Bacteria
Actinobacteria
Actinobacteridae
Actinomycetales
Streptomycetaceae
Streptomyces
Streptomyces drozdowiczii

description: Description of Streptomyces drozdowiczii BBT 1
Cells are Gram-staining-positive, non-flagellated, non-pigmented and branched mycelium-forming. Colonies are lenticular, raised, entire and white-colored after 2 days on R2A at 30°C. Positive for nitrate reduction, arginine dihydrolase, urease, esculin hydrolysis, gelatinase, β­galactosidase in API 20NE but negative for indole production and glucose fermentation. D-Glucose, L-arabinose, D-mannitol, D-mannose, N-acetyl-glucosamine, D-maltose, gluconate and malate are utilized. Does not utilize caprate, adipate, citrate and phenylacetate. Strain BBT1 (= NIBRBA0000114837) has been isolated from powder of biotite, Yesan, Korea.
description: Published as part of Ko, Kwan Su, Cha, Chang-Jun, Im, Wan-Taek, Kim, Seung-Bum, Seong, Chi-Nam, Bae, Jin-Woo, Jahng, Kwangyeop, Cho, Jang-Cheon, Joh, Ki-seong & Lee, Soon Dong, 2017, A report of 34 unrecorded bacterial species in Korea, belonging to the Actinobacteria, pp. 1-14 in Journal of Species Research 6 (1) on page 12, DOI: 10.12651/JSR.2017.6.1.001, http://zenodo.org/record/8120377
Diverse MarR bacterial regulators of auxin catabolism in the plant microbiome
Creators: name: Northen, Trent R.
name: Finkel, Omri M.
name: Kosina, Suzanne M.
name: Law, Theresa F.
name: Jones, Corbin D.
name: Conway, Jonathan M.
name: Redinbo, Matthew R.
name: Fitzpatrick, Connor R.
name: Lindberg, Chloe A.
name: Walton, William G.
name: Lietzan, Adam D.
name: Salas-González, Isai
name: Crook, Laura E.
name: Dangl, Jeffery L.
Publisher: name: Springer Nature
Year: 2022

description:
Chemical signalling in the plant microbiome can have drastic effects on microbial community structure, and on host growth and development. Previously, we demonstrated that the auxin metabolic signal interference performed by the bacterial genus Variovorax via an auxin degradation locus was essential for maintaining stereotypic root development in an ecologically relevant bacterial synthetic community. Here, we dissect the Variovorax auxin degradation locus to define the genes iadDE as necessary and sufficient for indole-3-acetic acid (IAA) degradation and signal interference. We determine the crystal structures and binding properties of the operon’s MarR-family repressor with IAA and other auxins. Auxin degradation operons were identified across the bacterial tree of life and we define two distinct types on the basis of gene content and metabolic products: iac-like and iad-like. The structures of MarRs from representatives of each auxin degradation operon type establish that each has distinct IAA-binding pockets. Comparison of representative IAA-degrading strains from diverse bacterial genera colonizing Arabidopsis plants show that while all degrade IAA, only strains containing iad-like auxin-degrading operons interfere with auxin signalling in a complex synthetic community context. This suggests that iad-like operon-containing bacterial strains, including Variovorax species, play a key ecological role in modulating auxins in the plant microbiome.
Additional file 1 of Study protocol for a stepped-wedge implementation study investigating the intersectoral collaboration of implementing the TREAT INTERACT intervention for primary school teachers and the mhGAP for health care workers for child mental health promotion in Uganda
Creators: name: Skar, Ane-Marthe Solheim
name: Engebretsen, Ingunn Marie S.
name: Braathu, Nora
name: Aber, Harriet
name: Bækkelund, Harald
name: Kühl, Melf-Jakob
name: Mukisa, Marjorie
name: Nalugya, Joyce Sserunjogi
name: Skokauskas, Norbert
name: Skylstad, Vilde
name: Wentzel-Larsen, Tore
name: Babirye, Juliet Ndimwibo
Publisher: name: figshare
Year: 2025
Subjects: Medicine
Biotechnology
Biological Sciences not elsewhere classified
Cancer
Science Policy

description: Supplementary Material 1: Supplementary Table 1. Concepts with chosen outcomes, outcome measures and planned analysis.
Diactis strumella Shelley 1996
Creators: name: Stoev, Pavel
name: Sierwald, Petra
name: Billey, Amber
Publisher: name: Zenodo
Year: 2008
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Diplopoda
Callipodida
Schizopetalidae
Diactis
Diactis strumella

description: Diactis strumella Shelley, 1996
Diactis strumella Shelley, 1996, Ent. Scand., 27 (1): 43, figs 32–35. Male HT (USNM) from Laguna Beach, Orange County, California, USA. Hoffman, 1999, Checklist Millip. North & Middle Am.: 204. Range: known only from the type locality.
description: Published as part of Stoev, Pavel, Sierwald, Petra & Billey, Amber, 2008, An annotated world catalogue of the millipede order Callipodida (Arthropoda: Diplopoda) *, pp. 1-50 in Zootaxa 1706 on page 37, DOI: 10.5281/zenodo.180904
Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons
Creators: name: Salas-González, Isai
name: Holcomb, Emily
name: Qi, Mingsheng
name: Liu, Peng
name: Creech, Cody
name: Veley, Kira W
name: Berry, Jeffrey C
name: Tringe, Susannah G
name: Finkel, Omri M
name: Bart, Rebecca S
name: O’Connor, Lily
name: Schachtman, Daniel P
name: Kuhs, Molly
name: del Rio, Tijana Glavina
name: Jupe, Julietta
name: Dangl, Jeffery L
Publisher: name: Oxford University Press (OUP)
Year: 2022

description:
Drought is a major abiotic stress limiting agricultural productivity. Previous field-level experiments have demonstrated that drought decreases microbiome diversity in the root and rhizosphere. How these changes ultimately affect plant health remains elusive. Toward this end, we combined reductionist, transitional and ecological approaches, applied to the staple cereal crop sorghum to identify key root-associated microbes that robustly affect drought-stressed plant phenotypes. Fifty-three Arabidopsis-associated bacteria were applied to sorghum seeds and their effect on root growth was monitored. Two Arthrobacter strains caused root growth inhibition (RGI) in Arabidopsis and sorghum. In the context of synthetic communities, Variovorax strains were able to protect plants from Arthrobacter-caused RGI. As a transitional system, high-throughput phenotyping was used to test the synthetic communities. During drought stress, plants colonized by Arthrobacter had reduced growth and leaf water content. Plants colonized by both Arthrobacter and Variovorax performed as well or better than control plants. In parallel, we performed a field trial wherein sorghum was evaluated across drought conditions. By incorporating data on soil properties into the microbiome analysis, we accounted for experimental noise with a novel method and were able to observe the negative correlation between the abundance of Arthrobacter and plant growth. Having validated this approach, we cross-referenced datasets from the high-throughput phenotyping and field experiments and report a list of bacteria with high confidence that positively associated with plant growth under drought stress. In conclusion, a three-tiered experimental system successfully spanned the lab-to-field gap and identified beneficial and deleterious bacterial strains for sorghum under drought.