cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1 of Medication adherence and costs of medical care among patients with Parkinson’s disease: an observational study using electronic medical records
Creators: name: Yi, Zhanmiao
name: Mao, Yudan
name: He, Chenxuan
name: Zhang, Yantao
name: Zhou, Junwen
name: Feng, Xing Lin
Publisher: name: figshare
Year: 2024
Subjects: subject: Space Science
subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Supplementary Material 1
title: Notable enough? The questioning of women’s biographies on Wikipedia
Creators: name: Martini, Franziska
Publisher: name: Freie Universität Berlin
Year: 2024
Subjects: subject: gender inequalities
subject: Wikipedia
subject: women
subject: knowledge order
subject: rational discourse
classificationCode: 300
subject: Sozialwissenschaften

description: This study focuses on biographies nominated for deletion in the German-language Wikipedia and the encyclopedia’s core principle of notability. Results are presented from quantitative content analyses of deletion nominations, discussions, and decisions from the year 2020. It shows that women’s biographies are more often called into question but not deleted more often than men’s biographies. Additionally, women’s biographies are discussed more controversially. Neither a lack of notability criteria, a lack of external sources, nor individual misogynistic users seem to cause this increased questioning. Instead, the results suggest that the notability of women is collectively surveilled and contested with higher intensity due to biased perceptions. This can be explained by the fact that the concept of notability is not value-free or gender-neutral in the first place—even though it is based on rational discourse. The gender gap in biographies is contentiously discussed by users themselves, too, while overt sexism and gender-based devaluations are effectively countered by engaged users.
Anisotropy of Yu-Shiba-Rusinov states in NbSe$_2$
Creators: name: Uldemolins, Mateo
name: Massee, Freek
name: Cren, Tristan
name: Mesaros, Andrej
name: Simon, Pascal
Publisher: name: arXiv
Year: 2024
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: The spatial structure of in-gap Yu-Shiba-Rusinov (YSR) bound states induced by a magnetic impurity in a superconductor is the essential ingredient for the possibility of engineering collective impurity states. Recently, a saddle-point approximation [Phys. Rev. B 105, 144503] revealed how the spatial form of a YSR state is controlled by an anisotropic exponential decay length, and an anisotropic prefactor, which depends on the Fermi velocity and Fermi-surface curvature. Here we analyze scanning tunnel microscope (STM) data on YSR states in NbSe$_2$, focusing on a key issue that the exponential decay length predicted theoretically from the small superconducting gap is much larger than the observed extent of YSR states. We confirm that the exponential decay can be neglected in the analysis of the anisotropy. Instead, we extract the anisotropic prefactor directly from the data, matching it to the theoretical prediction, and we establish that the theoretical expression for the prefactor alone captures the characteristic flower-like shape of the YSR state. Surprisingly, we find that up to linear order in the superconducting gap the anisotropic prefactor that determines the shape of YSR states is the same as the anisotropic response to the impurity in the underlying normal metal. Our work points out the correct way to analyze STM data on impurities in small-gap superconductors, and reveals the importance of the normal band structure's curvature and Fermi velocity in designing multi-impurity in-gap states in superconductors.
description: 5+8 pages, 3+5 figures
MOESM1 of Metabolic engineering of Escherichia coli for the production of cinnamaldehyde
Creators: name: Bang, Hyun
name: Lee, Yoon
name: Kim, Sun
name: Sung, Chang
name: Jeong, Ki
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Additional file 1: Figure S1. SDSâ  PAGE analysis of protein purifications.
Additional file 1: of Risk factors for unplanned and crash dialysis starts: a protocol for a systematic review and meta-analysis
Creators: name: Molnar, Amber
name: Swapnil Hiremath
name: Brown, Pierre
name: Ayub Akbari
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy
subject: Computational Biology

description: PRISMA-P 2015 checklist. (DOCX 37 kb)
Nonlinear photomagnetization in insulators
Creators: name: Mendoza, Bernardo S.
name: Arzate-Plata, Norberto
name: Tancogne-Dejean, Nicolas
name: Fregoso, Benjamin M.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Nonlinear photomagnetization is a process by which an oscillating electric field induces a static magnetization. We show that all 32 crystallographic point groups admit such spin polarization using circularly polarized electric fields to second order (as in the usual spin orientation or inverse Faraday effect) but only 29 points groups admit spin polarization using linearly polarized electric fields to second order. The excluded point groups are the highly symmetric $m$-3$m$, -$43m$ and 432. Using density functional theory we compute the spectrum of the second-order electric spin susceptibility of prototypical semiconductors Te, Se, SnS$_2$, GaAs, InSb and Si which corresponds to nonmagnetic materials with and without inversion symmetry. We show that nonlinear photomagnetization can be comparable to those of naturally occurring ferromagnets.
description: 8 pages, 1 figure, published version
Safely Learning with Private Data: A Federated Learning Framework for Large Language Model
Creators: name: Zheng, JiaYing
name: Zhang, HaiNan
name: Wang, LingXiang
name: Qiu, WangJie
name: Zheng, HongWei
name: Zheng, ZhiMing
Publisher: name: arXiv
Year: 2024
Subjects: subject: Cryptography and Security (cs.CR)
subject: Computation and Language (cs.CL)
subject: FOS: Computer and information sciences

description: Private data, being larger and quality-higher than public data, can greatly improve large language models (LLM). However, due to privacy concerns, this data is often dispersed in multiple silos, making its secure utilization for LLM training a challenge. Federated learning (FL) is an ideal solution for training models with distributed private data, but traditional frameworks like FedAvg are unsuitable for LLM due to their high computational demands on clients. An alternative, split learning, offloads most training parameters to the server while training embedding and output layers locally, making it more suitable for LLM. Nonetheless, it faces significant challenges in security and efficiency. Firstly, the gradients of embeddings are prone to attacks, leading to potential reverse engineering of private data. Furthermore, the server's limitation of handle only one client's training request at a time hinders parallel training, severely impacting training efficiency. In this paper, we propose a Federated Learning framework for LLM, named FL-GLM, which prevents data leakage caused by both server-side and peer-client attacks while improving training efficiency. Specifically, we first place the input block and output block on local client to prevent embedding gradient attacks from server. Secondly, we employ key-encryption during client-server communication to prevent reverse engineering attacks from peer-clients. Lastly, we employ optimization methods like client-batching or server-hierarchical, adopting different acceleration methods based on the actual computational capabilities of the server. Experimental results on NLU and generation tasks demonstrate that FL-GLM achieves comparable metrics to centralized chatGLM model, validating the effectiveness of our federated learning framework.
description: EMNLP 2024
IMPORTÂNCIA DO CIRURGIÃO DENTISTA NA EQUIPE MULTIDISCIPLINAR EM UTI
Creators: name: Ana Clara Pires Alves SANTANA
name: Ludimila Silveira CAMELO
name: Angélica Pereira ROCHA
Publisher: name: Zenodo
Year: 2024
Subjects: Cirurgião-dentista na UTI
Equipe multidisciplinar
Higiene bucal

description: RESUMO

Este trabalho visa explorar a importância da presença do cirurgião dentista na equipe multidisciplinar da UTI, destacando as principais intervenções odontológicas em pacientes internados nesse ambiente crítico. Além disso, discute-se a comunicação e integração entre os profissionais de saúde na UTI, ressaltando a necessidade de uma abordagem colaborativa e coordenada para garantir o cuidado integral do paciente. A atuação do cirurgião dentista na UTI é fundamental para prevenir complicações orais, promover a saúde bucal dos pacientes e contribuir para a recuperação global do indivíduo em estado crítico.
Additional file 1 of POSITIVE: experiences of an intervention aiming for reversing and preventing frailty using a home monitoring and communication platform within primary health care
Creators: name: Timm, Linda
name: Guidetti, Susanne
name: Taloyan, Marina
Publisher: name: figshare
Year: 2024
Subjects: Neuroscience
Biotechnology
Science Policy
Biological Sciences not elsewhere classified
Mental Health

description: Supplementary Material 1
Polypedilum concomitatum Johannsen 1932
Creators: name: Zhang, Ruilei
name: Song, Chao
name: Qi, Xin
name: Wang, Xinhua
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Chironomidae
Polypedilum
Polypedilum concomitatum

description: concomitatum (Johannsen, 1932): Archiv für Hydrobiologie (Supplement), 11: 517 (Chironomus (Polypedilum )).
Type locality. Indonesia (Lake Lamongan, East Java).
Distribution. OR: Indonesia (Java).
description: Published as part of Zhang, Ruilei, Song, Chao, Qi, Xin & Wang, Xinhua, 2016, Taxonomic review on the subgenus Tripodura Townes (Diptera: Chironomidae: Polypedilum) from China with eleven new species and a supplementary world checklist, pp. 1-53 in Zootaxa 4136 (1) on page 42, DOI: 10.11646/zootaxa.4136.1.1, http://zenodo.org/record/399782
Additional file 1: of Patients Receiving Integrative Medicine Effectiveness Registry (PRIMIER) of the BraveNet practice-based research network: study protocol
Creators: name: Dusek, Jeffery
name: Abrams, Donald
name: Roberts, Rhonda
name: Griffin, Kristen
name: Trebesch, Desiree
name: Dolor, Rowena
name: Wolever, Ruth
name: M. McKee
name: Kligler, Benjamin
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Lifestyle/Behavior Questions for PRIMIER. (PDF 123Â kb)
Additional file 1 of Differences in end-of-life care patterns between types of hospice used for cancer patients: a retrospective cohort study
Creators: name: Yun, Il
name: Park, Eun-Cheol
name: Nam, Chung Mo
name: Shin, Jaeyong
name: Jang, Suk-Yong
name: Jang, Sung-In
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Supplementary Material 1.
Gratia: An R package for exploring generalized additive models
Creators: name: Simpson, Gavin L.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Computation (stat.CO)
subject: Methodology (stat.ME)
subject: FOS: Computer and information sciences

description: Generalized additive models (GAMs, Hastie & Tibshirani, 1990; Wood, 2017) are an extension of the generalized linear model that allows the effects of covariates to be modelled as smooth functions. GAMs are increasingly used in many areas of science (e.g. Pedersen, Miller, Simpson, & Ross, 2019; Simpson, 2018) because the smooth functions allow nonlinear relationships between covariates and the response to be learned from the data through the use of penalized splines. Within the R (R Core Team, 2024) ecosystem, Simon Wood's mgcv package (Wood, 2017) is widely used to fit GAMs and is a Recommended package that ships with R as part of the default install. A growing number of other R packages build upon mgcv, for example as an engine to fit specialised models not handled by mgcv itself (e.g. GJMR, Marra & Radice, 2023), or to make use of the wide range of splines available in mgcv (e.g. brms, Bürkner, 2017).
 The gratia package builds upon mgcv by providing functions that make working with GAMs easier. gratia takes a tidy approach (Wickham, 2014) providing ggplot2 (Wickham, 2016) replacements for mgcv's base graphics-based plots, functions for model diagnostics and exploration of fitted models, and a family of functions for drawing samples from the posterior distribution of a fitted GAM. Additional functionality is provided to facilitate the teaching and understanding of GAMs.
description: 9 pages, 4 figures, submitted to Journal of Open Source Software
Accurate generation of stochastic dynamics based on multi-model Generative Adversarial Networks
Creators: name: Lanzoni, Daniele
name: Pierre-Louis, Olivier
name: Montalenti, Francesco
Publisher: name: arXiv
Year: 2023
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Machine Learning (cs.LG)
subject: Computational Physics (physics.comp-ph)
subject: Machine Learning (stat.ML)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: Generative Adversarial Networks (GANs) have shown immense potential in fields such as text and image generation. Only very recently attempts to exploit GANs to statistical-mechanics models have been reported. Here we quantitatively test this approach by applying it to a prototypical stochastic process on a lattice. By suitably adding noise to the original data we succeed in bringing both the Generator and the Discriminator loss functions close to their ideal value. Importantly, the discreteness of the model is retained despite the noise. As typical for adversarial approaches, oscillations around the convergence limit persist also at large epochs. This undermines model selection and the quality of the generated trajectories. We demonstrate that a simple multi-model procedure where stochastic trajectories are advanced at each step upon randomly selecting a Generator leads to a remarkable increase in accuracy. This is illustrated by quantitative analysis of both the predicted equilibrium probability distribution and of the escape-time distribution. Based on the reported findings, we believe that GANs are a promising tool to tackle complex statistical dynamics by machine learning techniques
description: Main text and appendices, 10 pages and 10 figures Updated version: citations to previous work which was not known to the authors have been added, text has been re-organized and modified accordingly; supplemental material has been moved into appendices
Additional file 1: Table S1. of Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
Creators: name: Goordial, Jacqueline
name: Raymond-Bouchard, Isabelle
name: Ronholm, Jennifer
name: Shapiro, Nicole
name: Woyke, Tanja
name: Whyte, Lyle
name: Bakermans, Corien
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: Associated MIGS record. (DOC 73 kb)
Radiation from Dirac fermions caused by a projective measurement
Creators: name: Kazinski, P. O.
name: Ryakin, V. A.
name: Shevchenko, P. S.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Physics (quant-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The theory of radiation of photons from Dirac particles caused by a projective measurement is developed. The explicit expressions for the inclusive probability to record a chain of events that the Dirac fermion had been measured in a certain state and after that the photon was recorded are derived. Stimulated and spontaneous radiations are considered. It is shown that in both cases the properties of radiation due to measurement resembles the properties of edge or transition radiation. In the case of stimulated radiation from a single particle, its wave function creates photons coherently as a charged fluid, i.e., the amplitudes of radiation from the points of the particle wave packet are summed. In the case of spontaneous radiation, the radiation of photons is incoherent, i.e., the probabilities of radiation from the points of the particle wave packet are added up. It is shown that stimulated radiation due to measurement can be used to trace the dynamics and collapse of the wave function of the Dirac particle. A systematic procedure taking into account a finiteness of the measurement time is presented. It is established that radiation due to measurement can be used as a source of hard photons, but the finiteness of the measurement time imposes an upper bound on the energy of radiated photons: the measurement time must be smaller than the radiation formation time, the latter being in inverse proportion to the photon energy. In the ultrarelativistic limit, the radiation formation time can be rather large. Several examples of radiation due to measurement of the state of free Dirac particles are investigated in detail. Namely, we scrutinize the radiation due to measurement of the spin projection, of the momentum, and of the coordinate for a general initial state of Dirac particles. The particular cases of uncorrelated and entangled particles in the beam are considered.
description: 32 pp
Additional file 1 of Association between TB delay and TB treatment outcomes in HIV-TB co-infected patients: a study based on the multilevel propensity score method
Creators: name: Liao, Rujun
name: Hu, Lin
name: Yu, Jie
name: Chen, Ying
name: Chen, Miaoshuang
name: Yan, Jingmin
name: Li, Xin
name: Han, Xinyue
name: Jike, Chunnong
name: Yu, Gang
name: Wang, Ju
name: Liao, Qiang
name: Xia, Lan
name: Bai, Xuefei
name: Shi, Jinhong
name: Jiang, Tian
name: Du, Liang
name: Zhang, Tao
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Supplementary Material 1
Additional file 5: of Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building
Creators: name: Cui, Hong
name: Dongfang Xu
name: Chong, Steven
name: Ramirez, Martin
name: Rodenhausen, Thomas
name: Macklin, James
name: LudĂ¤Scher, Bertram
name: Morris, Robert
name: Soto, Eduardo
name: NicolĂĄs Koch
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Matrix edits. List all the edits made in the ETC generated matrices. (DOCX 19Â kb)
Photoinactivation mechanism of hypericin nanoencapsulated in P123 against Microsporum canis
Creators: name: Galinari, Camila Barros
name: Bergmann, Eduardo Victor
name: Malacarne, Luis Carlos
name: Oliveira, Ana Carolina
name: Caetano, Wilker
name: Cotica, Erika Seki Kioshima
name: Svidzinski, Terezinha Inez Estivalet
name: de Souza Bonfim-Mendonça, Patrícia
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified

description: Aim: To evaluate the photodynamic mechanism of hypericin nanoencapsulated in P123 copolymer micelles against Microsporum canis in vitro. Material & methods: Antifungal susceptibility tests were performed, including the determination of the minimum fungicidal concentration and time-kill curve. Flow cytometry was used to evaluate the internalization of P123-Hyp in conidia and the activation of PDT type I and II mechanisms via the detection of reactive oxygen species (ROS), as well as to assess changes in the cell membrane using propidium iodide (PI) and cell morphology. Results: P123-Hyp-PDT exerted a fungistatic action on fungus, maintaining this action up to 24 h after exposure, corroborating the PS internalization results, which showed satisfactory uptake of P123-Hyp from a concentration of 3.125 μmol/l. Among the ROS studied, singlet oxygen was detected. Furthermore, the increased fluorescence intensity of PI in treated cells indicated necrotic cell death, while the size and granularity of the cells were also altered. Conclusion: Our results show, for the first time, a proposal for the mechanism of action of P123-Hyp-mediated PDT against M. canis, proving that it has a prolonged action on the fungus through activation of the type II photodynamic pathway, which resulted in disruption of the plasma membrane and cellular alterations. Photodynamic mechanism of Hypericin nanoencapsulated in P123 against Microsporum canis, proposed for the first time. Application of Pluronic® block copolymers as a drug delivery alternative for Hypericin. Fungicidal action with low concentration of P123-Hyp after irradiation (0 h). Prolonged fungistatic action, corroborating preliminary in vivo studies. Uptake of P123-Hyp by M. canis microconidia after 2 h incubation. Presence of singlet oxygen during exposure of M. canis to P123-Hyp-PDT highlighting the predominance of the type II photodynamic mechanism. Necrotic death of M. canis conidia after P123-Hyp-PDT, with an increase of more than half of the cell population labeled with propidium iodide. Increased granularity and decreased cell size related to necrotic death.
title: "La Madonna con Bambino e san Giovannino", Grazia Leonardo detto Leonardo da Pistoia, inv. 388 (ITA/EN)
title: Scheda catalogo digitale Borghese
titleType: AlternativeTitle
Creators: name: Iommelli, Antonio
name: Galleria Borghese
Publisher: name: Galleria Borghese
Year: 2024

description: Pubblicazione delle schede delle opere conservate nel museo ed estratte dal catalogo digitale di Galleria Borghese, nelle due versioni esistenti online, in italiano e inglese.

Collegamento al catalogo digitale:

ITA: https://www.collezionegalleriaborghese.it/

EN: https://www.collezionegalleriaborghese.it/en
Nitric oxide-releasing self-healing hydrogel for antibacterial and antibiofilm efficacy against polymicrobial infection
Creators: name: Hasan, Nurhasni
name: Luthfiyah, Widya
name: Palungan, Juliana
name: Ullah, Muneeb
name: Mustopa, Apon Zaenal
name: Nurfatwa, Maritsa
name: Irawan, Herman
name: Usmar, Usmar
name: Putranto, Aliyah
name: Yoo, Jin-Wook
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Aim: Bacterial infections and the formation of biofilms are currently key factors in the delay of wound healing. S-Nitroso glutathione (GSNO) is recognized as a nitric oxide (NO) donor that exhibits potent antibacterial and antibiofilm activities. However, some of the stability limitations of NO require it to be prepared pharmaceutically. Materials & methods: Here, we developed a self-healing hydrogel dressing consisting of GSNO, polyvinyl alcohol/borax (PVA/B) and carboxymethyl chitosan (cmCHI). This research aimed to determine the antibacterial and antibiofilm activities of a self-healing hydrogel (PVA-B-cmCHI/GSNO) against multiple bacteria and polymicrobial biofilms. Results: Forty mg/ml PVA-B-cmCHI/GSNO significantly increased the antibacterial activity against Pseudomonas aeruginosa, S. aureus, Methicillin resistant Staphylococcus aureus (MRSA), as indicated by a >5 log reduction in bacterial viability (∼99.999% killing). PVA-B-cmCHI/GSNO showed antibiofilm activity three-times greater than that of the blank self-healing hydrogel (PVA-B-cmCHI) by inhibiting 80% of the biofilm formation. Conclusion: The results suggest that the NO-releasing self-healing hydrogels exhibit notable antibacterial and antibiofilm properties and thus could be a promising approach for the treatment of bacterial or biofilm-infected wounds. S-Nitroso glutathione (GSNO) is recognized as a nitric oxide (NO) donor that exhibits potent antibacterial and antibiofilm activities. Self-healing hydrogels can be an alternative to overcome the limitation of NO and serve as promising wound dressings. NO-releasing self-healing hydrogels (PVA-B-cmCHI/GSNO) exhibited a sustained released of NO and minimal toxicity against fibroblast cells. PVA-B-cmCHI/GSNO show significant antibacterial activity against gram-positive and gram-negative bacteria. PVA-B-cmCHI/GSNO significantly inhibit the formation of polymicrobial biofilm in vitro. NO-releasing self-healing hydrogels exhibit notable antibacterial and antibiofilm properties and thus could be a promising approach for the treatment of bacterial or biofilm-infected wounds.
Zero-temperature Monte Carlo simulations of two-dimensional quantum spin glasses guided by neural network states
Creators: name: Brodoloni, L.
name: Pilati, S.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: A continuous-time projection quantum Monte Carlo algorithm is employed to simulate the ground state of a short-range quantum spin-glass model, namely, the two-dimensional Edwards-Anderson Hamiltonian with transverse field, featuring Gaussian nearest-neighbor couplings. We numerically demonstrate that guiding wave functions based on self-learned neural networks suppress the population control bias below modest statistical uncertainties, at least up to a hundred spins. By projecting a two-fold replicated Hamiltonian, the spin overlap is determined. A finite-size scaling analysis is performed to estimate the critical transverse field where the spin-glass transition occurs, as well as the critical exponents of the correlation length and the spin-glass susceptibility. For the latter two, good agreement is found with recent estimates from the literature for different random couplings. We also address the spin-overlap distribution within the spin-glass phase, finding that, for the workable system sizes, it displays a non-trivial double-peak shape with large weight at zero overlap.
description: 10 pages, 9 figures
Cicindela campestris Linnaeus 1758
Creators: name: Barševskis, Arvīds
name: Shavrin, Alexey
name: Anichtchenko, Aleksander
name: Balalaikins, Maksims
name: Valainis, Uldis
name: Kivleniece, Inese
name: Avgin, Sakine Serap
name: Tamutis, Vytautas
name: Huruk, Stanisław
name: Cibuļskis, Raimonds
name: Kļaviņa, Dārta
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Carabidae
Cicindela
Cicindela campestris

description: 2. Cicindela campestris Linnaeus, 1758 –
Amata munic., Nītaure, clearcut, pitfall traps, 06.2014, (2, A. Barševskis leg.), 07.2014, (1, A. Barševskis, I. Kivleniece, M. Markote leg.).
description: Published as part of Barševskis, Arvīds, Shavrin, Alexey, Anichtchenko, Aleksander, Balalaikins, Maksims, Valainis, Uldis, Kivleniece, Inese, Avgin, Sakine Serap, Tamutis, Vytautas, Huruk, Stanisław, Cibuļskis, Raimonds & Kļaviņa, Dārta, 2014, Faunistic Records Of The Beetles (Hexapoda: Coleoptera) In Latvia. 5, pp. 115-122 in Acta Biologica Universitatis Daugavpiliensis 14 (2) on page 116, DOI: 10.5281/zenodo.12645261
Current trends to design antimalarial drugs targeting N-myristoyltransferase
Creators: name: de Azevedo Teotônio Cavalcanti, Misael
name: Da Silva Menezes, Karla Joane
name: De Oliveira Viana, Jéssika
name: de Oliveira Rios, Éric
name: de Farias, Arthur Gabriel Corrêa
name: Weber, Karen Cacilda
name: Nogueira, Fatima
name: dos Santos Nascimento, Igor José
name: de Moura, Ricardo Olimpio
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Malaria is a disease caused by Plasmodium spp., of which Plasmodium falciparum and Plasmodium vivax are the most prevalent. Unfortunately, traditional and some current treatment regimens face growing protozoan resistance. Thus, searching for and exploring new drugs and targets is necessary. One of these is N-myristoyltransferase (NMT). This enzyme is responsible for the myristoylation of several protein substrates in eukaryotic cells, including Plasmodium spp., thus enabling the assembly of protein complexes and stabilization of protein–membrane interactions. Given the importance of this target in developing new antiparasitic drugs, this review aims to explore the recent advances in the design of antimalarial drugs to target Plasmodium NMT. Despite being a well-known disease, we need new drugs to treat malaria. Increasing resistance of the parasite that causes malaria to current drugs is a problem. One alternative mechanism that could be explored is the inhibition of an enzyme known as NMT. This study looks at NMT inhibitors. The NMT is a promising drug target explored to discover antimalarial drugs. Scaffolds, such as quinoline and benzofuran analogs, serve as a basis in the search for new PfNMT inhibitors. The computational method is the most explored to discover NMT inhibitors. The design of selective inhibitors of PvNMT can be applied by including the residues Phe103, Phe105, Tyr107, Tyr211, His213, Phe226, Ser319, Tyr334, Asn365 and Leu410 as critical regions for the inhibition mode in PvNMT. The quinoline, benzofuran, bepotastine-based sulfonamide and morpholine scaffolds have been explored the most regarding NMT inhibition.
Additional file 1: Table S1. of Transcriptome profiling reveals that feeding wild zooplankton to larval Atlantic cod (Gadus morhua) influences suites of genes involved in oxidation-reduction, mitosis, and selenium homeostasis
Creators: name: Rise, Matthew
name: Hall, Jennifer
name: Nash, Gordon
name: Xue, Xi
name: Booman, Marije
name: Katan, Tomer
name: A. Gamperl
Publisher: name: Figshare
Year: 2015
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Microarray-identified genes significantly up-regulated in RA-Zoo compared with both RA and RA-PH. (PDF 350kb)
Uncovering Emergent Spacetime Supersymmetry with Rydberg Atom Arrays
Creators: name: Li, Chengshu
name: Liu, Shang
name: Wang, Hanteng
name: Zhang, Wenjun
name: Li, Zi-Xiang
name: Zhai, Hui
name: Gu, Yingfei
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: In the zoo of emergent symmetries in quantum many-body physics, the previously unrealized emergent spacetime supersymmetry (SUSY) is particularly intriguing. Although it was known that spacetime SUSY could emerge at the (1+1)d tricritical Ising transition, an experimental realization is still absent. In this work, we propose to realize emergent spacetime SUSY using reconfigurable Rydberg atom arrays featuring two distinct sets of Rydberg excitations, tailored for implementation on dual-species platforms. In such systems, the spacetime SUSY manifests itself in the respective correlation functions of a bosonic mode and its fermionic partner. However, the correlation function of the fermionic mode inevitably involves a string operator, making direct measurement challenging in the conventional setting. Here, we leverage the hybrid analog-digital nature of the Rydberg atom arrays, which allows for the simulation of a physical Hamiltonian and the execution of a digital quantum circuit on the same platform. This hybrid protocol offers a new perspective for uncovering the hidden structure of emergent spacetime SUSY.
description: 8 pages, 5 figures; published version
Additional file 1 of Designing, implementation and evaluation of story reading: a solution to increase general empathy in medical students
Creators: name: Mahmoudi, Masoumeh
name: Ghorbani, Ali Asghar
name: Pourasghar, Mehdi
name: Balaghafari, Azita
name: Charati, Jamshid Yazdani
name: Ghahrani, Nassim
name: Amini, Farzaneh
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Additional file 1: Appendix 1. The Stories.
Breakdown of order-fractionalization in the CPT model
Creators: name: Panigrahi, Aaditya
name: Tsvelik, Alexei
name: Coleman, Piers
Publisher: name: arXiv
Year: 2024
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: We present an analysis of the half-filled CPT model, an analytically tractable Kondo lattice model with Yao-Lee spin-spin interactions on a 3D hyperoctagon lattice, proposed by Coleman, Panigrahi, and Tsvelik. Previous studies have established that the CPT model exhibits odd-frequency triplet superconductivity and order fractionalization. Through asymptotic analyses in the small $J$ and large $J$ Kondo coupling limits, we identify a quantum critical point at $J_c$, marking a transition from a superconductor to a Kondo insulator. By estimating the vison gap energy to account for thermal gauge fluctuations, we determine the energy scales governing the thermal breakdown of order fractionalization. Moreover, at large $J$ the Kondo insulator undergoes orbital decoupling, leading to the formation of a decoupled Kitaev orbital liquid. These findings and analogies with the $\mathbb{Z}_2$-gauged $XY$ model lead us to propose a tentative phase diagram for the CPT model at half-filling.
description: 10 pages, 7 figures
Inspecting the use of SLMs for the control of photonic quantum states
Creators: name: Bordakevich, Sebastián
name: Pabón, Dudbil
name: Rebón, Lorena
name: Ledesma, Silvia
Publisher: name: arXiv
Year: 2023
Subjects: subject: Optics (physics.optics)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Spatial light modulators (SLMs) are widely used to coherently control quantum states of light. When carrying out these experiments, some assumptions are made. For instance, it is supposed that the position-momentum correlations between twin photon pairs are not affected by the use of a liquid crystal display (LCD) as a SLM. Furthermore, it is assumed that the characterization of such devices performed with an intense laser source, is still valid in the single photon regime. In this work, we show that such assumptions are acceptable, within the experimental uncertainties, for a liquid crystal on silicon (LCoS) display. This is especially important when considering the use of this kind of displays for the coherent control of quantum states based on twin photon sources.
Additional file 2: Table S2. of An examination of the effectiveness of health warning labels on smokeless tobacco products in four states in India: findings from the TCP India cohort survey
Creators: name: Gravely, Shannon
name: Fong, Geoffrey
name: Driezen, Pete
name: Xu, Steve
name: Quah, Anne
name: Sansone, Genevieve
name: Gupta, Prakash
name: Mangesh Pednekar
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Science Policy

description: GEE analysis examining differences in awareness and salience of health warning labels on smokeless tobacco between pre- and post-policy periods (Waves 1 and 2) among all pre-and post-policy completers (N = 5142) those that quit SLT by post-policy (n = 508). (DOC 40 kb)
"Madonna con Bambino", cerchia di Pippi Giulio detto Giulio Romano, inv. 389 (ITA/EN)
Creators: name: Iommelli, Antonio
name: Galleria Borghese
Publisher: name: Galleria Borghese
Year: 2024

description: Pubblicazione delle schede delle opere conservate nel museo ed estratte dal catalogo digitale di Galleria Borghese, nelle due versioni esistenti online, in italiano e inglese.

Collegamento al catalogo digitale:

ITA: https://www.collezionegalleriaborghese.it/

EN: https://www.collezionegalleriaborghese.it/en
Agonum sexpunctatum
Creators: name: Barševskis, Arvīds
name: Shavrin, Alexey
name: Anichtchenko, Aleksander
name: Balalaikins, Maksims
name: Valainis, Uldis
name: Kivleniece, Inese
name: Avgin, Sakine Serap
name: Tamutis, Vytautas
name: Huruk, Stanisław
name: Cibuļskis, Raimonds
name: Kļaviņa, Dārta
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Carabidae
Agonum
Agonum sexpunctatum

description: 5. Agonum sexpunctatum (Linnaeus, 1758) –
Amata munic., Nītaure, clearcut, pitfall traps, 06.2014, (11, A. Barševskis leg.), 07.2014, (3, A. Barševskis, I. Kivleniece, M. Markote leg.), Ogre munic., Ogresgals, clearcut, pitfall traps, 05.2014, (1, A. Barševskis leg.), 07.2014, (9, A. Barševskis, I. Kivleniece, M. Markote leg.), 08.2014, (5, A. Barševskis, I. Kivleniece leg.), Talsi munic., Stende, clearcut, pitfall traps, 05.2014, (1, A. Barševskis leg.), 06.2014, (3, A. Barševskis leg.), 07.2014, (4, A. Barševskis, I. Kivleniece, M. Markote leg.).
description: Published as part of Barševskis, Arvīds, Shavrin, Alexey, Anichtchenko, Aleksander, Balalaikins, Maksims, Valainis, Uldis, Kivleniece, Inese, Avgin, Sakine Serap, Tamutis, Vytautas, Huruk, Stanisław, Cibuļskis, Raimonds & Kļaviņa, Dārta, 2014, Faunistic Records Of The Beetles (Hexapoda: Coleoptera) In Latvia. 5, pp. 115-122 in Acta Biologica Universitatis Daugavpiliensis 14 (2) on page 116, DOI: 10.5281/zenodo.12645261
General Relativistic Fluctuation Theorems
Creators: name: Cai, Yifan
name: Wang, Tao
name: Zhao, Liu
Publisher: name: arXiv
Year: 2024
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Using the recently proposed covariant framework of general relativistic stochastic mechanics and stochastic thermodynamics, we proved the detailed and integral fluctuation theorems in curved spacetime. The time-reversal transformation is described as a transformation from the perspective of future-directed observer to that of the corresponding past-directed observer, which enables us to maintain general covariance throughout the construction.
description: 5 pages. v3: published version
title: "Compianto sul Cristo morto", Benvenuti Giovanni Battista detto Ortolano, inv. 390 (ITA/EN)
title: Scheda catalogo digitale Borghese
titleType: AlternativeTitle
Creators: name: Scanu, Lara
name: Galleria Borghese
Publisher: name: Galleria Borghese
Year: 2024

description: Pubblicazione delle schede delle opere conservate nel museo ed estratte dal catalogo digitale di Galleria Borghese, nelle due versioni esistenti online, in italiano e inglese.

Collegamento al catalogo digitale:

ITA: https://www.collezionegalleriaborghese.it/

EN: https://www.collezionegalleriaborghese.it/en
Using pile-up collisions as an abundant source of low-energy hadronic physics processes in ATLAS and an extraction of the jet energy resolution
Creators: name: ATLAS Collaboration
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: During the 2015-2018 data-taking period, the Large Hadron Collider delivered proton-proton bunch crossings at a centre-of-mass energy of 13 TeV to the ATLAS experiment at a rate of roughly 30 MHz, where each bunch crossing contained an average of 34 independent inelastic proton-proton collisions. The ATLAS trigger system selected roughly 1 kHz of these bunch crossings to be recorded to disk. Offline algorithms then identify one of the recorded collisions as the collision of interest for subsequent data analysis, and the remaining collisions are referred to as pile-up. Pile-up collisions represent a trigger-unbiased dataset, which is evaluated to have an integrated luminosity of 1.33 pb$^{-1}$ in 2015-2018. This is small compared with the normal trigger-based ATLAS dataset, but when combined with vertex-by-vertex jet reconstruction it provides up to 50 times more dijet events than the conventional single-jet-trigger-based approach, and does so without adding any additional cost or requirements on the trigger system, readout, or storage. The pile-up dataset is validated through comparisons with a special trigger-unbiased dataset recorded by ATLAS, and its utility is demonstrated by means of a measurement of the jet energy resolution in dijet events, where the statistical uncertainty is significantly reduced for jet transverse momenta below 65 GeV.
description: 51 pages in total, author list starting page 34, 14 figures. All figures including auxiliary figures are available at http://atlas.web.cern.ch/Atlas/GROUPS/PHYSICS/PAPERS/JETM-2023-08
Additional file 3: Table S3. of Transcriptome profiling reveals that feeding wild zooplankton to larval Atlantic cod (Gadus morhua) influences suites of genes involved in oxidation-reduction, mitosis, and selenium homeostasis
Creators: name: Rise, Matthew
name: Hall, Jennifer
name: Nash, Gordon
name: Xue, Xi
name: Booman, Marije
name: Katan, Tomer
name: A. Gamperl
Publisher: name: Figshare
Year: 2015
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Complete list of overrepresented and underrepresented GO terms in test set of genes (303 genes differentially expressed between RA-Zoo and both RA and RA-PH) compared with reference set of genes (20K cod microarray). (PDF 90kb)
FinDKG: Dynamic Knowledge Graphs with Large Language Models for Detecting Global Trends in Financial Markets
Creators: name: Li, Xiaohui Victor
name: Passino, Francesco Sanna
Publisher: name: arXiv
Year: 2024
Subjects: subject: Computational Finance (q-fin.CP)
subject: FOS: Economics and business

description: Dynamic knowledge graphs (DKGs) are popular structures to express different types of connections between objects over time. They can also serve as an efficient mathematical tool to represent information extracted from complex unstructured data sources, such as text or images. Within financial applications, DKGs could be used to detect trends for strategic thematic investing, based on information obtained from financial news articles. In this work, we explore the properties of large language models (LLMs) as dynamic knowledge graph generators, proposing a novel open-source fine-tuned LLM for this purpose, called the Integrated Contextual Knowledge Graph Generator (ICKG). We use ICKG to produce a novel open-source DKG from a corpus of financial news articles, called FinDKG, and we propose an attention-based GNN architecture for analysing it, called KGTransformer. We test the performance of the proposed model on benchmark datasets and FinDKG, demonstrating superior performance on link prediction tasks. Additionally, we evaluate the performance of the KGTransformer on FinDKG for thematic investing, showing it can outperform existing thematic ETFs.
description: 9 pages
A Unified Probabilistic Approach to Traffic Conflict Detection
Creators: name: Jiao, Yiru
name: Calvert, Simeon C.
name: van Cranenburgh, Sander
name: van Lint, Hans
Publisher: name: arXiv
Year: 2024
Subjects: subject: Robotics (cs.RO)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: Traffic conflict detection is essential for proactive road safety by identifying potential collisions before they occur. Existing methods rely on surrogate safety measures tailored to specific interactions (e.g., car-following, side-swiping, or path-crossing) and require varying thresholds in different traffic conditions. This variation leads to inconsistencies and limited adaptability of conflict detection in evolving traffic environments. Consequently, a need persists for consistent detection of traffic conflicts across interaction contexts. To address this need, this study proposes a unified probabilistic approach. The proposed approach establishes a unified framework of traffic conflict detection, where traffic conflicts are formulated as context-dependent extreme events of road user interactions. The detection of conflicts is then decomposed into a series of statistical learning tasks: representing interaction contexts, inferring proximity distributions, and assessing extreme collision risk. The unified formulation accommodates diverse hypotheses of traffic conflicts and the learning tasks enable data-driven analysis of factors such as motion states of road users, environment conditions, and participant characteristics. Jointly, this approach supports consistent and comprehensive evaluation of the collision risk emerging in road user interactions. Our experiments using real-world trajectory data show that the approach provides effective collision warnings, generalises across distinct datasets and traffic environments, covers a broad range of conflict types, and captures a long-tailed distribution of conflict intensity. The findings highlight its potential to enhance the safety assessment of traffic infrastructures and policies, improve collision warning systems for autonomous driving, and deepen the understanding of road user behaviour in safety-critical interactions.
description: Officially published in Analytic Methods in Accident Research