cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Didymoglossum lorencei (Tardieu) Ebihara & Dubuisson
Creators: name: Ahamada H. Saïd
name: Sabine Hennequin
name: Germinal Rouhan
name: Jean-Yves Dubuisson
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Polypodiopsida
Hymenophyllales
Hymenophyllaceae
Didymoglossum
Didymoglossum lorencei

description: Didymoglossum lorencei (Tardieu) Ebihara & Dubuisson
MADAGASCAR: Massif du Manongarivo, Antsatrotro, versant NE à pente forte, 20 May 1992, F.Rakotondrainibe 1688 (P00100202); Nosy Mangabe, Toamasina, 2 Dec. 1993, F.Rakotondrainibe 1876 (P006071); Toamasina, Ambanizana, 5 Dec. 1993, F.Rakotondrainibe 1875 (P006070); Antsiranana, Andapa, Befingotra, 24 Oct. 1994, F.Rakotondrainibe 2171 (P00006382); Tolanaro, Réserve de l’Andohahela, 24 Oct. 1995, F.Rakotondrainibe 2931 (P01303568); Eminiminy, versant Est et sommet du Trafon’omby, 24 Oct. 1995, F.Rakotondrainibe 2907 (P00067003); Corridor reliant les réserves d’Andringitra et d’Ivohibe, 16 Jan. 1997, F.Rakotondrainibe 4387 (P00134469); Réserve Spéciale d’Ivohibe, 17 Oct. 1997, F.Rakotondrainibe 4166 (P00134185); Forêt de Vinanitelo, 28 Oct. 2000, F.Rakotondrainbe 6136 (P00212685); RNI n°4 Tsaratanana, Diego, Beangona, 26 Nov. 2000, A.Rasolohery 62 (P00338329); PN de Marojejy, 19 Oct. 2001, F.Rakotondrainibe 6299 (P00244844); PN de Marojejy, 27 Oct. 2001, F.Rakotondrainibe 6413 (P00244987); Daraina, Forêt de Binara, 8 Nov. 2001, F.Rakotondrainibe 6544 (P00248655); Forêt de Manatantely, 26 Nov. 2004, F.Rakotondrainibe 6972 (P00411791).
LA RÉUNION: Saint Philippe, Brûlé de Takamaka, 7 Jun. 2006, E.Grangaud 1752 (P01627307).
description: Published as part of Ahamada H. Saïd, Sabine Hennequin, Germinal Rouhan & Jean-Yves Dubuisson, 2017, Disentangling the diversity and taxonomy of Hymenophyllaceae (Hymenophyllales, Polypodiidae) in the Comoros, pp. 1-53 in European Journal of Taxonomy 313 on page 51, DOI: 10.5852/ejt.2017.313, http://zenodo.org/record/896401
Regulation of meiotic chromosome dynamics by ZHP-3 in C. elegans
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: Tumor cells are often defined by two characteristics: having too many or too few chromosomes (also referred as aneuploidy) and chromosomal rearrangements that can produce deleterious gene fusions. These examples of genetic instability are often the consequence of defects in chromosome segregation and misregulated recombination. The specialized cell division, meiosis, presents a compelling instance in which the regulation of recombination and proper chromosome segregation are intricately linked. Crossover recombination, which generates chiasmata between homologous chromosomes, is required for chromosomes to segregate appropriately during the meiotic divisions. Although significant headway has been made in the identification of proteins involved in recombination, an open question in the field remains: How is genetic exchange at the level of the DNA duplex coordinated with corresponding changes in higher order chromosome architecture to promote proper chromosome segregation? We’ve identified zhp-3, a putative ubiquitin ligase, as a primary player in restructuring chromosomes in response to recombination events. We hypothesize that ZHP-3 ubiquitinates its substrates to elicit the necessary changes in chromosome architecture that accompany crossover recombination and facilitate chiasmata formation. To gain mechanistic insight into how zhp-3 may be regulating this process, we propose to: 1) further characterize its ubiquitin ligase activity in vitro and identify potential targets with a candidate based approach; 2) determine which domains of ZHP-3 are required to mediate interaction with other components of the ubiquitin pathway, in particular E2s; and 3) carry out a genetic screen to isolate dominant suppressors of a hypomorphic mutant allele of zhp-3 to identify in vivo substrates of ZHP-3 in an unbiased manner. These experiments will be an important starting point to understanding how changes in higher order chromosome structure are coupled to recombination, in both an appropriate context, such as meiosis, and an inappropriate context, such as tumor development and progression.
Tetramorium kydelphon Bolton, 1979, sp. n.
Creators: name: Bolton, B.
Publisher: name: Zenodo
Year: 1979
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Tetramorium
Tetramorium kydelphon

description: Tetramorium kydelphon sp. n.
Holotype worker. TL 3.4, HL 0.78, HW 0.64, CI 85, SL 0.52, SI 81, PW 0.48, AL 0.92.
Antennae with 12 segments. Anterior clypeal margin with a very feeble median indentation. Mandibles unsculptured except for hair-pits. Frontal carinae strong, running almost to occipital corners before becoming confused with the occipital rugoreticulum and surmounted throughout their length by a narrow raised rim or flange. Maximum diameter of eye 0.18, about 0.28 x HW. Propodeal spines elongate but broad in profile, elevated. Metapleural lobes narrowly elongate-triangular. Petiole node in profile shaped as in insolens (Fig. 45, this paper), in dorsal view as broad as long. Dorsum of head with irregular, spaced-out longitudinal rugulae and with a weak occipital rugoreticulum. Dorsal alitrunk reticulaterugose but without a transverse carina at the pro- and mesonotal junction. Petiole dorsum weakly rugulose, the postpetiole dorsally with a few very faint longitudinal markings and a little very feeble punctulation. Gaster unsculptured. All dorsal surfaces of head and body with stout, stiff, erect or suberect hairs. Colour pale yellow.
Holotype worker, New Guinea: Papua, Karema, Brown R., no. 601, 8 - ll. iii. 1955 lowl. rainfor. (E. O. Wilson) (MCZ, Cambridge).
Paratypes. A worker and a queen with same data as holotype (BMNH). Also to be included as paratypes are other members of this series and two New Guinea series from Lai and Huon Peninsula, Lower Busu River (E. O. Wilson) at present housed in MCZ, Cambridge and referred previously (Bolton, 1977: 102) to obtusidens.
description: Published as part of Bolton, B., 1979, The ant tribe Tetramoriini (Hymenoptera: Formicidae). The genus Tetramorium Mayr in the Malagasy region and in the New World., pp. 129-181 in Bulletin of the British Museum (Natural History) Entomology 38 on pages 177-178
Second annual report: Mosquito Extermination Commission
Creators: name: Gies, Russell W.
Publisher: name: No Publisher Supplied
Year: 1913

description: A yearly series of reports from the Union County Mosquito Extermination Commission. The reports cover finances, inspections, drainage, oiling, and salt marsh, inland, and educational work regarding the extermination and control of mosquitoes in the different towns and districts of Union County, New Jersey.
Erotelis smaragdus
Creators: name: Angulo, Arturo
name: Betts, Joel T.
name: González-Alemán, Néstor J.
name: Castañeda, Edgar
name: Berghe, Eric Van Den
name: Elías, Diego J.
name: Mcmahan, Caleb D.
name: Matamoros, Wilfredo A.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Perciformes
Eleotridae
Erotelis
Erotelis smaragdus

description: Erotelis smaragdus (Valenciennes 1837). Emerald Sleeper; Guavina de Concha
Vouchers: Not available. Distribution: Western Atlantic Ocean; from Florida, USA, to northern Brazil; entering estuaries and littoral lagoons and ascending river courses; (Nicaragua) WK, KP and Es (Atlantic); 0–8 masl; Per, Dia, Amp. Occurrence and conservation status: Nat; LC (2015), population trend unknown. Literature: Villa (1982: 223; detailed description, including illustrations and an identification key, and information on distribution and ecology) and Robertson & Van Tassell (2019: 4099; detailed description, including illustrations, and information on distribution, with a map, and ecology).
description: Published as part of Angulo, Arturo, Betts, Joel T., González-Alemán, Néstor J., Castañeda, Edgar, Berghe, Eric Van Den, Elías, Diego J., Mcmahan, Caleb D. & Matamoros, Wilfredo A., 2023, Continental fishes of Nicaragua: diversity, distribution and conservation status; with an annotated and illustrated checklist of species and an identification guide to families, pp. 1-89 in Zootaxa 5376 (1) on page 33, DOI: 10.11646/zootaxa.5376.1.1, http://zenodo.org/record/10208788
P-TEFb as a novel therapeutic target for treating cancer
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: The control of RNA polymerase (Pol) II elongation has long been recognized as important for the expression of several key proto-oncogenes such as c-myc, c-fos and junB during cellular proliferation and differentiation. Recent global analyses indicate that it plays a much more prominent and general role in modulating metazoan gene expression than previously thought. The stimulation of Pol II elongation requires P-TEFb, a Cdk9-cyclin T1 heterodimer that acts by phosphorylating Pol II and negative elongation factors. To accommodate different growth conditions and cellular transcriptional demands, P-TEFb alternately interacts with its positive and negative regulators and is thus kept in a functional equilibrium. Accumulating biochemical, genetic and phamacological evidence all points to P-TEFb and its functional equilibrium as playing a key role in controlling cell growth and tumorigenesis. Lending fresh support to this notion, we have recently identified a novel P-TEFb-associated factor called PIP7S that contributes to the inhibition of P-TEFb. PIP7S is homologous to a known tumor suppressor in Drosophila and frequently mutated in human cancers. The depletion of PIP7S is shown to activate P-TEFb and P-TEFbdependent expression of key tumor-related genes and cause mammary epithelial transformation. These data and others have for the first time implicated a direct role for P-TEFb, considered as a general transcription factor, in oncogenic transformation. The demonstrations that several key PTEFb- associated factors including PIP7S can profoundly affect breast cell growth and transformation suggest that P-TEFb and its functional equilibrium warrant further investigation as a potential therapeutic target for controlling human breast cancer. Consistent with this idea, at least two Cdk9 inhibitors that can induce apoptosis in tumor cells are currently undergoing clinical trials for treating various cancers especially metastatic breast cancer. To further investigate the potential of controlling cell transformation through modulating the P-TEFb functional equilibrium, we plan to alter the expression and/or activity of several key P-TEFb-associated factors and also the P-TEFb subunits in established mammary epithelial cell lines to see whether these manipulations can either promote or suppress cell growth and transformation. Results from these experiments will provide the basis for future applications for outside funding, which will enable the extension of the analyses into animal models. If
Third annual report: Union County Mosquito Extermination Commission
Creators: name: Gies, Russell W.
name: Sawyer, W. T.
Publisher: name: No Publisher Supplied
Year: 1914

description: A yearly series of reports from the Union County Mosquito Extermination Commission. The reports cover finances, inspections, drainage, oiling, and salt marsh, inland, and educational work regarding the extermination and control of mosquitoes in the different towns and districts of Union County, New Jersey.
Regulation of DNA repair by SUMOylation
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: DNA damage generated by endogenous and exogenous causes must be properly recognized and repaired in order to maintain genomic integrity. Deregulation and impairment of these processes have deleterious consequences resulting in genome instability, cellular dysfunction, or cell death. Consequently, dysfunction of DNA damage response/repair factors is closely related to carcinogenesis. In vivo, chromatin structure is a crucial element of DNA repair. Although genetic studies have identified many critical factors that carry out DNA repair, how their activities are coordinated in vivo in the context of chromatin is still not well understood. The small ubiquitinrelated modifier (SUMO) modification of proteins plays critical roles in various cellular processes, including transcription, mitosis, protein targeting and stability as well as DNA repair. While yeast has only one SUMO, higher eukaryotes express four SUMO variants (SUMO1, 2, 3, and 4), and the functional specificity of different SUMO variants is not fully defined. SUMO modifications of several key factors involved in DNA repair have been identified, such as PCNA and Rad52, which critically regulate their functions. A SUMO-dependent ubiquitin ligase also plays an important role in DNA repair. Despite the accumulating evidence for the significance of SUMO in DNA repair, its in vivo kinetics, specificity and regulation remain open questions, particularly in mammalian cells. We found that green laser microirradiation preferentially induces highly clustered single- and doublestrand DNA breaks that can be used to cytologically study the in vivo cellular responses to DNA damage. Using this system, we detected a robust SUMO response at the damage sites. Interestingly, the response at the damage sites almost exclusively involves polymer formation of SUMO2/3 and not SUMO1, while most of the previous studies of repair proteins focused on SUMO1 conjugation. Further analysis revealed that the SUMO responses at the damage sites in G1 and S/G2 are mediated by distinct mechanisms and target proteins, suggesting that they may mediate important cell cyclespecific damage response/repair processes. Thus, the goal of this project is to identify the target and the factors responsible for cell cycle-specific SUMO responses at the DNA damage sites in G1 and S/G2, and to analyze their significance in DNA damage signaling and repair. The outcome of this project should provide important new insight into the regulation of DNA repair by this versatile postt
Tetramorium obtusidens Viehmeyer
Creators: name: Bolton, B.
Publisher: name: Zenodo
Year: 1979
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Tetramorium
Tetramorium obtusidens

description: Tetramorium obtusidens Viehmeyer
Following the removal of adelphon and kydelphon from the series formerly associated with obtusidens it is necessary to make a few adjustments to the description of this species.
Worker. TL 2.4 - 2.7, HL 0.58 - 0.64, HW 0.49 - 0.54, CI 81 - 85, SL 0.38 - 0.42, SI 77 - 80, PW 0.34 - 0.38, AL 0.68 - 0.74 (8 measured).
With the general characters of the complex and of the bicarinatum-group to which it belongs, but with additional characters as follows. Frontal carinae less strongly developed than in adelphon or kydelphon, extending back beyond level of eye but weak, scarcely stronger than other cephalic rugulae. Maximum diameter of eye 0.12 - 0.14, about 0.25 - 0.27 x HW. Petiole node in dorsal view as broad or slightly broader than long. Dorsum of head irregularly longitudinally rugulose, with a reticulum occipitally. Dorsal alitrunk reticulate-rugulose but without a raised transverse carina at the promesonotal junction. Petiole dorsum with sparse rugulae, postpetiole dorsally with fine superficial punctulation, at most with only one or two very feeble longitudinal marks. Pilosity on dorsal surfaces of head and body much denser than in adelphon or kydelphon, the individual hairs finer and more flexuous than in those species. Colour pale yellow.
With the removal of adelphon and kydelphon, obtusidens is known only from Singapore. To the present it is the smallest known member of the bicarinatum-group.
description: Published as part of Bolton, B., 1979, The ant tribe Tetramoriini (Hymenoptera: Formicidae). The genus Tetramorium Mayr in the Malagasy region and in the New World., pp. 129-181 in Bulletin of the British Museum (Natural History) Entomology 38 on page 178
Effects of systemic aging environment on adult stem cells and their implications in cancer
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: In 2008 it was estimated that one in four human deaths in the U.S. is associated with malignancies (1). Emerging evidences show that adult stem cells such as mesenchymal stem cells (MSCs), which are known to play an important role in homeostasis, contribute to various tumorigenic processes, such as tumor homing, tumor growth, and metastasis. This indicates a dual contradicting role of MSCs; on the one hand, MSCs contribute to tissue repair and regeneration as they wear out, and on the other hand, MSCs contribute to tumorigenesis. This raises a fundamental question: Is there a niche-regulated, age-dependent switch that changes “good MSCs” (those contributing to homeostasis) into “bad MSCs” (that contribute to cancer)? Such a possibility is highly conceivable given that age is the most common risk factor in cancer and that age associated metabolic and inflammatory pathways can impart changes on MSCs. To this end, we hypothesize that the morphologic, phenotypic, and functional characteristics of MSCs are strictly regulated by their niche and the tumorigenic properties of MSCs are manifestations of changes in their surrounding niche where aging is an important factor contributing to the above changes. To this end, the proposed work aims to: (i) fundamentally understand the changes that MSCs residing within the bone marrow undergo with aging and during ex vivo expansion and (ii) investigate how the age factor contributes to tumorigenic properties of MSCs. In order to answer the above questions, we will use both in vitro and in vivo systems. We have established a systematic study, which will evaluate the age-dependent biological alterations of morphology, phenotype, and functionality of MSCs. The same system will be used in the proposed study to evaluate the age dependent biological alterations of MSCs and their subsequent contribution to tumorigenesis. Impact: Successful completion of this study could offer a broad understanding of factors that contribute to tumorigenic properties of MSCs. In addition, unraveling the microenvironment factors and molecular events determining the commitment and contributions of MSCs into homeostasis versus cancer development will significantly increase our understanding of stem cell biology and their role in regeneration/repair and diseases.
Didymoglossum erosum (Willd.) J.P.Roux
Creators: name: Ahamada H. Saïd
name: Sabine Hennequin
name: Germinal Rouhan
name: Jean-Yves Dubuisson
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Polypodiopsida
Hymenophyllales
Hymenophyllaceae
Didymoglossum
Didymoglossum erosum

description: Didymoglossum erosum (Willd.) J.P.Roux
MADAGASCAR: Réserve Spéciale du Manongarivo, Massif de Bekolosy, 13 Oct. 1991, F.Rakotondrainibe 1350 (P00064663); Forêt d’Andranomay, 20 Dec. 1996, F.Rakotondrainibe 3822 (P00084696); Limite extérieure nord de la RS d’Ivohibe, 6 Oct. 1997, F.Rakotondrainibe 4002 (P00134003); Limite extérieure nord de la RS d’Ivohibe, 8 Oct. 1997, F.Rakotondrainibe 4058 (P00134066) Réserve Spéciale d’Ivohibe, 25 Oct. 1997, F.Rakotondrainibe 4239 (P00134271); Région de Tsinjoarivo, Forêt de Mahatsinjo, 7 Jan. 1999, F.Rakotondrainibe 4559 (P00134690).
description: Published as part of Ahamada H. Saïd, Sabine Hennequin, Germinal Rouhan & Jean-Yves Dubuisson, 2017, Disentangling the diversity and taxonomy of Hymenophyllaceae (Hymenophyllales, Polypodiidae) in the Comoros, pp. 1-53 in European Journal of Taxonomy 313 on page 51, DOI: 10.5852/ejt.2017.313, http://zenodo.org/record/896401
Impact of chronic stress and behavioral coping on mammary tumor development in a mouse model of ErbB2-positive breast cancer
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: It has long been hypothesized that psychosocial factors could have important effects on human health, and recent studies have begun to outline the physiological pathways that translate psychological distress into a negative health outcome. These effects are mediated in part by the so-called “stress response”: primarily catecholamine release by the autonomic nervous system and glucocorticoid release controlled by the hypothalamicpituitary- adrenal (HPA) axis. While there have been significant separate gains in knowledge over the last several decades in tumor biology and the biological response to stress, relatively little is known about how these processes interact and even less is known about opportunities for therapeutic intervention presented by these interactions. This proposal will examine how stress influences the initiation and progression of mammary tumors in a well characterized mouse model of breast cancer. We will also determine whether pharmacological and behavioral manipulations can ameliorate the effects of stress on these endpoints. We predict that psychogenic stress (restraint stress and social isolation) will facilitate mammary tumor formation and progression by providing ErbB2- independent proliferation and survival signals using the dox inducible MTB/TAN model. We predict that pharmacologic and behavioral interventions aimed at abrogating the effects of two principal hormones secreted during stress, corticosterone and noradrenaline, will attenuate the effects of stress on mammary tumor formation and progression. The proposed studies should clarify whether psychogenic stress regulates physiological pathways that impact the development of mammary tumors. If the proposed interventions are successful, this would suggest that behavioral interventions could become a valuable compliment to existing cancer therapies in humans.
Fourth annual report: Union County Mosquito Extermination Commission
Creators: name: Gies, Russell W.
name: Sawyer, W. T.
Publisher: name: No Publisher Supplied
Year: 1915

description: A yearly series of reports from the Union County Mosquito Extermination Commission. The reports cover finances, inspections, drainage, oiling, and salt marsh, inland, and educational work regarding the extermination and control of mosquitoes in the different towns and districts of Union County, New Jersey.
Pelodrilus Beddard 1891
Creators: name: Csuzdi, Csaba
name: Szederjesi, Tímea
name: Sherlock, Emma
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Clitellata
Haplotaxida
Haplotaxidae
Pelodrilus

description: Genus Pelodrilus Beddard, 1891
Pelodrilus pseudotuberculatus Zicsi, 1998
Pelodrilus pseudotuberculatus Zicsi, 1998a Mitt. Hamb. Zool. Mus. Inst. 95: 61.
Remarks. Brinkhurst (1966) merged Pelodrilus Beddard, 1891, Heterochaetella Yamaguchi, 1953 and Adenodrilus Cekanovskaya, 1959 with Haplotaxis Hoffmeister, 1843. Zicsi (1998a) argued for the resurrection of the genus Pelodrilus on the basis of its special Gondwanean distribution.
description: Published as part of Csuzdi, Csaba, Szederjesi, Tímea & Sherlock, Emma, 2018, Annotated checklist of earthworm species described by András Zicsi (Clitellata: Megadrili), pp. 11-42 in Zootaxa 4496 (1) on page 12, DOI: 10.11646/zootaxa.4496.1.4, http://zenodo.org/record/1447011
Elasto-optical tomography for breast cancer imaging
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: X-ray mammography is the primary method for detecting breast cancer that is the most common malignancy in women. However, mammography frequently fails to detect small tumors and is not quite specific in terms of tumor benignity and malignancy. The objective of this application is to develop a new imaging modality – elasto-optical tomography that amplifies the elastic perturbation-induced diffuse optical parameters via mechanical compression. The proposed nonionizing-radiation modality promises to generate images informative to detect breast tumors with significantly better diagnostic performance. The specific aims are to (1) develop an elasto-optical coupling model to determine the resulting light fluent rate at the outer boundary and displacement fields within breast tissues including lesion masses; (2) establish an efficient algorithm to reconstruct the optical coefficients and elasto-optical coupling parameters for breast tissues; and (3) examine the imaging and diagnostic performance indexes of the proposed elasto-optical coupling system using breast phantoms. The mechanical-optical coupling framework is formulated and implemented with appropriate finite-element-based interpretation functions for heterogeneous breast tissues. The validation and reliability of the proposed methodology will be examined using breast phantoms with pre-specified tumors. It will be performed in a systematic way to determine the imaging performance matrix and establish their statistical significance.
Didymoglossum rotundifolium (Bonap.) J.P.Roux
Creators: name: Ahamada H. Saïd
name: Sabine Hennequin
name: Germinal Rouhan
name: Jean-Yves Dubuisson
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Polypodiopsida
Hymenophyllales
Hymenophyllaceae
Didymoglossum
Didymoglossum rotundifolium

description: Didymoglossum rotundifolium (Bonap.) J.P.Roux
MADAGASCAR: Réserve Spéciale du Manongarivo, Massif d’Antsatrotro, 11 Oct. 1991, F.Rakotondrainibe 1348 (P00064690); Parc National de la Montagne d’Ambre, Lac Maudit, 28 Mar. 1992, F.Rakotondrainibe 1553 (P00085780); Forêt de Manatantely, 26 Nov. 2004, F.Rakotondrainibe 6971 (P00411792).
description: Published as part of Ahamada H. Saïd, Sabine Hennequin, Germinal Rouhan & Jean-Yves Dubuisson, 2017, Disentangling the diversity and taxonomy of Hymenophyllaceae (Hymenophyllales, Polypodiidae) in the Comoros, pp. 1-53 in European Journal of Taxonomy 313 on page 52, DOI: 10.5852/ejt.2017.313, http://zenodo.org/record/896401
MOESM2 of Genome-wide association studies and genomic prediction of breeding values for calving performance and body conformation traits in Holstein cattle
Creators: name: Abo-Ismail, Mohammed
name: Luiz Brito
name: Miller, Stephen
name: Sargolzaei, Mehdi
name: Grossi, Daniela
name: Moore, Steve
name: Plastow, Graham
name: Stothard, Paul
name: Nayeri, Shadi
name: Schenkel, Flavio
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 2: Figure S2. Distribution of 601,717 SNPs in the high-density panel across the bovine genome. Genomic coordinates of SNPs are displayed along the horizontal axis (Mb) and chromosome numbers are displayed on the vertical axis
Elucidating the RNA targets and activities of the onco-fetal RNA binding protein KOC in pancreatic ductal adenocarcinoma
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: Pancreatic adenocarinoma is the fourth most common cause of cancer related deaths world wide, with an estimated incidence of 9 patients in 100,000 individuals. Despite the high prevalence of this devastating disease, relatively little is known concerning the molecular etiology of pancreatic cancers. The KOC gene (KH domain over-expressed in cancer) encodes an evolutionarily conserved, onco-fetal RNA biding protein. KOC expression is linked to an increased aggressive biological potential of cancerous lesions and is a biomarker for malignancy. While there is strong evidence for the over expression of KOC in cancer, little is known concerning the molecular functions of this protein. Many RNA binding proteins participate in post-transcriptional control of gene expression by influencing diverse processes such as alternative pre-mRNA splicing, polyadenylation, mRNA export, translation and mRNA stability. Moreover, RNA binding proteins may coordinate the post-transcriptional expression of functionally related genes. The posttranscriptional operon hypothesis may be extremely relevant to diseases associated with aberrant expression of RNA binding proteins. We will test the hypothesis that the KOC protein regulates the post-transcriptional expression of genes involved in cellular transformation and metastasis. The goal of this proposal is to identify the mRNA targets of KOC under physiological conditions and extrapolate functional relationships between KOC ligands and pancreatic ductal adenocarcinoma (PDAC). THE GOAL OF THIS PROPOSAL IS TO: Elucidate the in vivo RNA binding specificity of KOC using Cross-linking Immunoprecipitation and high throughput sequencing (CLIP-Seq). Expression of KOC is restricted to embryogenesis but is reactivated in high-grade precursor lesions of pancreatic cancer. We will use a powerful unbiased and transcriptome-wide method to identify RNA fragments that co-purify with KOC from pancreatic cancer cell lines. Computational approaches will be used to reveal KOC consensus binding site(s) and functional relationships between target transcripts. SIGNIFICANCE Support of this proposal by the CRCC will enable the PI to develop a complementary but non-overlapping research project focusing on the roles of “orphan” RNA binding protein in cancer. The work proposed herein is intended to generate significant, high quality preliminary data required for submission of extramural grant applications.
Fifth annual report: Union County Mosquito Extermination Commission
Creators: name: Gies, R. W.
Publisher: name: No Publisher Supplied
Year: 1916

description: A yearly series of reports from the Union County Mosquito Extermination Commission. The reports cover finances, inspections, drainage, oiling, and salt marsh, inland, and educational work regarding the extermination and control of mosquitoes in the different towns and districts of Union County, New Jersey.
Gobiomorus maculatus
Creators: name: Angulo, Arturo
name: Betts, Joel T.
name: González-Alemán, Néstor J.
name: Castañeda, Edgar
name: Berghe, Eric Van Den
name: Elías, Diego J.
name: Mcmahan, Caleb D.
name: Matamoros, Wilfredo A.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Perciformes
Eleotridae
Gobiomorus
Gobiomorus maculatus

description: Gobiomorus maculatus (Günther 1859). Bigscale Sleeper, Pacific Sleeper; Guavina del Pacífico, Bocón, Guavina Bocóna, Dormilón de Escamas Grandes, Dormilón Manchado
Vouchers: UCR 0052-010 (18), 0187-001 (4), 0270-002 (10), 0272-001 (1) and 0273-008 (3); other collections: MCZ 30726 (1), UF 142431 (1) and 233737 (1). Distribution: Eastern Pacific Ocean; from Baja California and the mouth of the Gulf of California, Mexico, to northern Peru, including the Galapagos and Cocos islands; entering estuaries and ascending river courses; (Nicaragua) ER, PN and Ni (Pacific); 0–110 masl; Per, Dia,Amp. Occurrence and conservation status: Nat; LC (2019), population trend unknown. Literature: Villa (1982: 225; detailed description, including illustrations and an identification key, and information on distribution and ecology), Bussing (1998: 422; brief description, including illustrations and an identification key, and information on distribution, with a map, and ecology), Robertson & Allen (2015: 1979; detailed description, including illustrations, and information on distribution, with a map, and ecology) and Angulo (2021: 35; listed, including information on distribution).
description: Published as part of Angulo, Arturo, Betts, Joel T., González-Alemán, Néstor J., Castañeda, Edgar, Berghe, Eric Van Den, Elías, Diego J., Mcmahan, Caleb D. & Matamoros, Wilfredo A., 2023, Continental fishes of Nicaragua: diversity, distribution and conservation status; with an annotated and illustrated checklist of species and an identification guide to families, pp. 1-89 in Zootaxa 5376 (1) on page 34, DOI: 10.11646/zootaxa.5376.1.1, http://zenodo.org/record/10208788
Organic interplay in a jazz trio
Creators: name: ZION, JONATHAN MARCUS
Publisher: name: Monash University
Year: 2025
Subjects: classificationCode: 360304
subject: Music performance
classificationCode: 360302
subject: Music composition and improvisation

description: This research expresses a new understanding to account for meaning in the musical interplay of a jazz trio. It does so by proposing the music, and the processes of its making, constitute wholes additional to its parts fuelled by forces transpiring between those parts, some of which are living humans. The exegesis that accompanies the folio of recordings and audio data, proposes this concept from a philosophical ground centred around the work of Deleuze and Deleuze & Guattari.
Hymenophyllum sibthorpioides (Bory ex Willd.) Mett. ex Kuhn
Creators: name: Ahamada H. Saïd
name: Sabine Hennequin
name: Germinal Rouhan
name: Jean-Yves Dubuisson
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Polypodiopsida
Hymenophyllales
Hymenophyllaceae
Hymenophyllum
Hymenophyllum sibthorpioides

description: Hymenophyllum sibthorpioides (Bory ex Willd.) Mett. ex Kuhn
MADAGASCAR: Eminiminy, 25 Nov. 1995, F.Rakotondrainibe 3172 (P00067295); Eminiminy, 28 Nov. 1995, F.Rakotondrainibe 3205 (P00067329).
LA RÉUNION: s.d., M.Lepervanche 6 (P00065013); s.d., J.B.G.M. Bory de St.­Vincent s.n. (P00612301); s.d., J.B.G.M. Bory de St.­Vincent s.n. (P00065012).
MAURITIUS: s.d., J.B.G.M. Bory de St.­Vincent s.n. (iso-: P00612300).
description: Published as part of Ahamada H. Saïd, Sabine Hennequin, Germinal Rouhan & Jean-Yves Dubuisson, 2017, Disentangling the diversity and taxonomy of Hymenophyllaceae (Hymenophyllales, Polypodiidae) in the Comoros, pp. 1-53 in European Journal of Taxonomy 313 on page 52, DOI: 10.5852/ejt.2017.313, http://zenodo.org/record/896401
Additional file 7: Table S3. of XTHs from Fragaria vesca: genomic structure and transcriptomic analysis in ripening fruit and other tissues
Creators: name: Opazo, María
name: Lizana, Rodrigo
name: Yazmina Stappung
name: Davis, Thomas
name: Herrera, Raúl
name: Moya-León, María
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: List of primers employed in the determination of relative expression level of FvXTHs from F. vesca by qPCR (DOCX 39 kb)
Chilota bidiverticulatus Zicsi 1993
Creators: name: Csuzdi, Csaba
name: Szederjesi, Tímea
name: Sherlock, Emma
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Clitellata
Opisthopora
Acanthodrilidae
Chilota
Chilota bidiverticulatus

description: Chilota bidiverticulatus Zicsi, 1993
Chilota bidiverticulatus Zicsi, 1993b Mitt. Hamb. Zool. Mus. Inst. 90: 168.
Chilota bidiverticulatus: Zicsi & Csuzdi 2001 Ber. nat.-med. Verein, Innsbruck 88: 132.
description: Published as part of Csuzdi, Csaba, Szederjesi, Tímea & Sherlock, Emma, 2018, Annotated checklist of earthworm species described by András Zicsi (Clitellata: Megadrili), pp. 11-42 in Zootaxa 4496 (1) on page 13, DOI: 10.11646/zootaxa.4496.1.4, http://zenodo.org/record/1447011
Gobiomorus polylepis Ginsburg 1953
Creators: name: Angulo, Arturo
name: Betts, Joel T.
name: González-Alemán, Néstor J.
name: Castañeda, Edgar
name: Berghe, Eric Van Den
name: Elías, Diego J.
name: Mcmahan, Caleb D.
name: Matamoros, Wilfredo A.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Perciformes
Eleotridae
Gobiomorus
Gobiomorus polylepis

description: Gobiomorus polylepis Ginsburg 1953. Finescale Sleeper; Guavina del Pacífico, Bocón, Guavina Bocóna, Dormilón de Escamas Finas, Dormilón Manchado
Vouchers: Not available. Distribution: Eastern Pacific Ocean; from central Mexico to southern Costa Rica; entering estuaries and ascending river courses; (Nicaragua) ER, PN and Ni (Pacific); 0–45 masl; Per, Dia, Amp. Occurrence and conservation status: Nat; DD (2019), population trend unknown. Literature: Bussing (1998: 424; brief description, including illustrations and an identification key, and information on distribution, with a map, and ecology) and Angulo (2021: 35; listed, including information on distribution).
description: Published as part of Angulo, Arturo, Betts, Joel T., González-Alemán, Néstor J., Castañeda, Edgar, Berghe, Eric Van Den, Elías, Diego J., Mcmahan, Caleb D. & Matamoros, Wilfredo A., 2023, Continental fishes of Nicaragua: diversity, distribution and conservation status; with an annotated and illustrated checklist of species and an identification guide to families, pp. 1-89 in Zootaxa 5376 (1) on page 34, DOI: 10.11646/zootaxa.5376.1.1, http://zenodo.org/record/10208788
Chilota farellonensis Zicsi 1993
Creators: name: Csuzdi, Csaba
name: Szederjesi, Tímea
name: Sherlock, Emma
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Annelida
Clitellata
Opisthopora
Acanthodrilidae
Chilota
Chilota farellonensis

description: Chilota farellonensis Zicsi, 1993
Chilota farellonensis Zicsi, 1993b Mitt. Hamb. Zool. Mus. Inst. 90: 163.
description: Published as part of Csuzdi, Csaba, Szederjesi, Tímea & Sherlock, Emma, 2018, Annotated checklist of earthworm species described by András Zicsi (Clitellata: Megadrili), pp. 11-42 in Zootaxa 4496 (1) on page 13, DOI: 10.11646/zootaxa.4496.1.4, http://zenodo.org/record/1447011
Sixth annual report: Union County Mosquito Extermination Commission
Creators: name: Gies, Russell W.
name: Sell, Frederick W,
name: Hope, W. C.
Publisher: name: No Publisher Supplied
Year: 1917

description: A yearly series of reports from the Union County Mosquito Extermination Commission. The reports cover finances, inspections, drainage, oiling, and salt marsh, inland, and educational work regarding the extermination and control of mosquitoes in the different towns and districts of Union County, New Jersey.
Seventh and eighth annual reports: Union County Mosquito Extermination Commission
Creators: name: Whiton, John M.
name: Richards, L. J.
name: Bauer, Jacob L.
name: Platz, Charles M.
name: Gies, Russell W.
Publisher: name: No Publisher Supplied
Year: 1919

description: A yearly series of reports from the Union County Mosquito Extermination Commission. The reports cover finances, inspections, drainage, oiling, and salt marsh, inland, and educational work regarding the extermination and control of mosquitoes in the different towns and districts of Union County, New Jersey.
Genetic analysis of aberrant protein synthesis control downstream of PI3K signaling in prostate cancer
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: Components of the PI3K signal transduction pathway are found deregulated or lost in the majority of human cancers. Somatic deletions or mutations of the PTEN tumor suppressor gene, a negative regulator of the PI3K-AKT signaling pathway, have been identified in a large fraction of tumors, frequently in prostate cancers, placing PTEN among the most commonly mutated genes in human cancer. Prostate-specific inactivation of PTEN leads to invasive and metastatic prostate cancer. One of critical downstream targets of the PI3K pathway is the kinase mTOR (mammalian target of rapamycin) that positively controls the oncogene eIF4E, a key regulator of protein synthesis. However, very little is known on how aberrant control of eIF4E-dependent protein synthesis contributes to the multi-step processes of cancer initiation and progression. An outstanding question is to what extent hyperactivation of eIF4E downstream of the PI3K-PTEN-mTOR signaling pathway contributes to cellular transformation, and what are the molecular mechanisms by which deregulations in translation control lead to cancer initiation, progression. In this proposal we will 1) undertake a direct genetic strategy to rescue in an inducible manner eIF4E hyperactivation during PTEN-induced prostate tumor formation; and 2) assess the relative contribution of eIF4E towards PTEN-mediated tumorigenesis by assessing in vivo the impact on prostate tumorigenesis and the progression from PIN ? invasive CaP ? metastatic carcinoma. The results of these experiments will lay the ground work for our future long-term research goals in which we plan to employ a novel bioluminescent translation reporter mouse, which acts as a sensitive in vivo sensor to monitor capdependent translation downstream of PI3K signaling in prostate cancer. These studies will also establish the foundation for future characterization of downstream mRNAs that are specifically deregulated at the level of translation upon eIF4E hyperactivation. The completion of these studies will be instrumental in defining the role of deregulation in translation control in prostate cancer and the rational design of a novel generation of therapeutic agents, which target the deregulated translational machinery in cancer cells.
MOESM4 of High-resolution analysis of selection sweeps identified between fine-wool Merino and coarse-wool Churra sheep breeds
Creators: name: GutiĂŠrrez-Gil, Beatriz
name: Esteban-Blanco, Cristina
name: Wiener, Pamela
name: Chitneedi, Praveen
name: Aroa Suarez-Vega
name: Juan-Jose Arranz
Publisher: name: Figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 4. Description of the extent of the linkage disequilibrium and block structure based on the analysis of the 50K-chip genotypes of the samples considered in this study.
Union County Mosquito Extermination Commission report of work done 1920-1923
Creators: name: Whiton, John M.
Publisher: name: No Publisher Supplied
Year: 1923

description: A yearly series of reports from the Union County Mosquito Extermination Commission. The reports cover finances, inspections, drainage, oiling, and salt marsh, inland, and educational work regarding the extermination and control of mosquitoes in the different towns and districts of Union County, New Jersey.
Guavina guavina
Creators: name: Angulo, Arturo
name: Betts, Joel T.
name: González-Alemán, Néstor J.
name: Castañeda, Edgar
name: Berghe, Eric Van Den
name: Elías, Diego J.
name: Mcmahan, Caleb D.
name: Matamoros, Wilfredo A.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Perciformes
Eleotridae
Guavina
Guavina guavina

description: Guavina guavina (Valenciennes 1837). Guavina; Guavina, Guavina Cabezona
Vouchers: Not available. Distribution: Western Atlantic Ocean; from Florida, USA, to southeastern Brazil; entering estuaries and littoral lagoons and ascending river courses; (Nicaragua) WK, KP, Es and BF (Atlantic); 0–8 masl; Per, Dia, Amp. Occurrence and conservation status: Nat; LC (2019), population trend unknown. Literature: Villa (1982: 225, as Guabina guabina —misspelled; detailed description, including illustrations and an identification key, and information on distribution and ecology), Robertson & Van Tassell (2019: 4101; detailed description, including illustrations, and information on distribution, with a map, and ecology) and Angulo (2021: 35; listed, including information on distribution).
description: Published as part of Angulo, Arturo, Betts, Joel T., González-Alemán, Néstor J., Castañeda, Edgar, Berghe, Eric Van Den, Elías, Diego J., Mcmahan, Caleb D. & Matamoros, Wilfredo A., 2023, Continental fishes of Nicaragua: diversity, distribution and conservation status; with an annotated and illustrated checklist of species and an identification guide to families, pp. 1-89 in Zootaxa 5376 (1) on page 34, DOI: 10.11646/zootaxa.5376.1.1, http://zenodo.org/record/10208788
Evaluating the role of PI3-K/PTEN in teratocarcinoma formation and pluripotency of human embryonic stem cells
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: During cancer progression, tumor cells can revert back to an embryonic-like state and activate key pluripotent signaling pathways. Studying the interface between pluripotent embryonic cells and tumor cell growth could provide a better understanding of the molecular events leading to cancer. Human embryonic stem cells (hESCs) and their malignant counterparts, embryonal carcinoma (EC) cells provide an in vitro model to study both early cell fate decisions and alterations in fate decisions that may lead to cancer. hESCs highly express a number of genes that are critical for maintenance of pluripotency including OCT4, SOX2, and NANOG. Reactivation of these pluripotency-associated genes has been observed in various embryonic and adult somatic cancer cells. However, it is not well understood how the pluripotent network interacts with intra- and extracellular signaling cues to control both pluripotency and prevent carcinoma formation. One universal mechanism to promote survival and/or self-renewal in embryonic stem cells (ESCs) is activation of phosphoinositide 3-kinase (PI3-K) signaling. We hypothesize that PI3-K signaling regulates the pluripotency and microRNA networks in human embryonic stem cells (hESCs) to mediate proper self-renewal and differentiation. We expect that loss of phosphatase and tensin homolog (PTEN), a key regulator of PI3-K signaling, will promote increased expression of pluripotency network genes and prevent proper hESC differentiation. This could lead to increased pluripotent stem cell maintenance and promote carcinoma formation in pluripotent stem cellderived tumors. To test this we will create both PTEN-deficient and AKT overexpressing hESCs. We will then evaluate how alterations in PI3-K signaling regulates pluripotency and microRNA networks in hESCs. Lastly we will examine how alterations in PI3-K signals regulates the balance of differentiation and self-renewal in vitro and in vivo during tumor formation. Knowledge of how pluripotency networks interact with intrinsic self-renewal regulators could be a tremendous benefit for cancer research. Understanding the role of pluripotency and signaling networks in cancer could also provide selective targets for cancer therapy.
Hymenophyllum capillare Desv., Memoires de la Societe 1827
Creators: name: Ahamada H. Saïd
name: Sabine Hennequin
name: Germinal Rouhan
name: Jean-Yves Dubuisson
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Polypodiopsida
Hymenophyllales
Hymenophyllaceae
Hymenophyllum
Hymenophyllum capillare

description: Hymenophyllum capillare Desv.
MADAGASCAR: Befingotra, RS d’Anjanaharibe-Sud, 18 Nov. 1994, F.Rakotondrainibe (P00046932); Daraina, Forêt de Binara, 6 Nov. 2001, F.Rakotondrainibe 6534 (P00248642).
2460
LA RÉUNION: s.d., J.B.G.M.Bory de St­Vincent s.n. (P00477830).
description: Published as part of Ahamada H. Saïd, Sabine Hennequin, Germinal Rouhan & Jean-Yves Dubuisson, 2017, Disentangling the diversity and taxonomy of Hymenophyllaceae (Hymenophyllales, Polypodiidae) in the Comoros, pp. 1-53 in European Journal of Taxonomy 313 on page 52, DOI: 10.5852/ejt.2017.313, http://zenodo.org/record/896401