cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Richard III, The Livingstons of Callendar, and the Conflict Between Genealogy and Genetics
Creators: name: Smith, John
Publisher: name: figshare
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 60408 Genomics
subject: Computational Biology
subject: Evolutionary Biology

description: A skeleton excavated at the presumed site of the Grey Friars friary in Leicester in 2012 is almost certainly that of the English king, Richard III (1452 -1485), and mtDNA (which is passed from mother to child) extracted from the skeleton matches mtDNA taken from descendants of Richard's sister Anne of York. However Y-DNA (which is passed from father to son) extracted from the skeleton apparently doesn't match Y-DNA taken from descendants of Henry Somerset the 5th Duke Of Beaufort, who according to history descended from Richard's 2nd great grand father Edward III (1312 - 1377). The implication according to geneticists, and the media, is that there is a 'false paternity event' somewhere between Edward and the Somersets. Also, the false paternity events don't end there, for only 4 of these 5 Somerset descendants match each other. And it may be worse even than this: the patrilineal line of a Frenchman named Patrice de Warren apparently traces back to Richard III through the illegitimate son of Edward III's 4th great grandfather, Geoffrey Plantagenet, Count of Anjou (1113 - 1151). But de Warren's Y-DNA doesn't match that of either Richard III or any of the Somersets. In this note, a formula for calculating the time of the most recent common ancestor is introduced, and some of its consequences outlined. This formula arises from a mathematical framework within which it is possible that the traditional genealogy is correct, and that Geoffrey Plantaganet was the father of a male line incorporating Richard III, all 5 Somersets, and Patrice de Warren.
Additional file 1: Figure S1. of Establishing and characterizing patient-derived xenografts using pre-chemotherapy percutaneous biopsy and post-chemotherapy surgical samples from a prospective neoadjuvant breast cancer study
Creators: name: Yu, Jia
name: Qin, Bo
name: Moyer, Ann
name: Sinnwell, Jason
name: Thompson, Kevin
name: Copland, John
name: Marlow, Laura
name: Miller, James
name: Yin, Ping
name: Gao, Bowen
name: Minter-Dykhouse, Katherine
name: Tang, Xiaojia
name: McLaughlin, Sarah
name: Moreno-Aspitia, Alvaro
name: Schweitzer, Anthony
name: Lu, Yan
name: Hubbard, Jason
name: Northfelt, Donald
name: Gray, Richard
name: Hunt, Katie
name: Conners, Amy
name: Suman, Vera
name: Kalari, Krishna
name: Ingle, James
name: Lou, Zhenkun
name: Visscher, Daniel
name: Weinshilboum, Richard
name: Boughey, Judy
name: Goetz, Matthew
name: Wang, Liewei
Publisher: name: figshare
Year: 2017
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: Characterization and utilization of PDX models generated from both pretreatment biopsies and surgical samples in the BEAUTY study. Figure S2. Representative immunohistochemistry shows the change of subtype from luminal B to triple negative. The histology is depicted using H&E staining and the expression of ER, PR, HER2, and Ki-67 is compared between the representative PDX (passage 2) and the corresponding human tumor (M06). Figure S3. Immunohistochemistry shows different subtypes for xenografts derived from the same original patient tumor. The representative PDX tumors at passage 2, and corresponding human tumor (M14) are shown. Figure S4. In vivo taxane response for the other six PDX models tested. Passage 4 tumors were used for the drug tests. (PDF 4901 kb)
title: CFPR: interview avec SUI2019_0049
Creators: name: Delafontaine, François
name: Avanzi, Mathieu
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2022
Subjects: subject: Français
subject: fra

description: Conforms to: Praat textgrid
description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Source: https://nakala.fr/10.34847/nkl.c8873343.v3#cbf91c19da8d92e1cfc69ac60605a7a2b822e82c
Additional file 2: of Establishing and characterizing patient-derived xenografts using pre-chemotherapy percutaneous biopsy and post-chemotherapy surgical samples from a prospective neoadjuvant breast cancer study
Creators: name: Yu, Jia
name: Qin, Bo
name: Moyer, Ann
name: Sinnwell, Jason
name: Thompson, Kevin
name: Copland, John
name: Marlow, Laura
name: Miller, James
name: Yin, Ping
name: Gao, Bowen
name: Minter-Dykhouse, Katherine
name: Tang, Xiaojia
name: McLaughlin, Sarah
name: Moreno-Aspitia, Alvaro
name: Schweitzer, Anthony
name: Lu, Yan
name: Hubbard, Jason
name: Northfelt, Donald
name: Gray, Richard
name: Hunt, Katie
name: Conners, Amy
name: Suman, Vera
name: Kalari, Krishna
name: Ingle, James
name: Lou, Zhenkun
name: Visscher, Daniel
name: Weinshilboum, Richard
name: Boughey, Judy
name: Goetz, Matthew
name: Wang, Liewei
Publisher: name: figshare
Year: 2017
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Virology
subject: Computational Biology

description: Supplementary methods. Table S1. Clinical parameters effects on pre-treatment biopsy PDX rate. Table S2. Clinical parameters effects on residual surgical PDX rate. Table S3. Patient clinical molecular subtype versus xenograft molecular subtype. Table S4. Xenograft pathological subtype changes recapitulated clinical subtype change in patients. Table S5. Patient pre-treatment pam50 subtype versus pam50 subtype. Table S6. Drug response in xenograft concordance with clinical drug response. (DOC 150 kb)
title: CFPR: interview avec SUI2019_0012
Creators: name: Delafontaine, François
name: Avanzi, Mathieu
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2021
Subjects: subject: Français
subject: fra

description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Conforms to: Praat textgrid
description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Source: https://nakala.fr/10.34847/nkl.cec19891.v4#edb1c9271510e34ce63084eba6c238a4db5eb9b0
Additional file 1: Table S1. of Sexual dysfunction and mode of delivery in Chinese primiparous women: a systematic review and meta-analysis
Creators: name: Fan, Dazhi
name: Li, Song
name: Wang, Wen
name: Tian, Guo
name: Liu, Li
name: Wu, Song
name: Guo, Xiaoling
name: Liu, Zhengping
Publisher: name: figshare
Year: 2017
Subjects: Medicine
Biological Sciences not elsewhere classified
Science Policy

description: PRISMA Checklist. (DOC 64Â kb)
title: CFPR: interview avec RDC2021_0095
Creators: name: Delafontaine, François
name: Avanzi, Mathieu
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2021
Subjects: subject: Français
subject: fra

description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Conforms to: Praat textgrid
description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Source: https://nakala.fr/10.34847/nkl.b1bbulm7.v3#beec808f272b5c55fe236b1c44e87e7b78df27ec
Additional file 2: Table S2. of Sexual dysfunction and mode of delivery in Chinese primiparous women: a systematic review and meta-analysis
Creators: name: Fan, Dazhi
name: Li, Song
name: Wang, Wen
name: Tian, Guo
name: Liu, Li
name: Wu, Song
name: Guo, Xiaoling
name: Liu, Zhengping
Publisher: name: figshare
Year: 2017
Subjects: Space Science
Medicine
Biotechnology
Biological Sciences not elsewhere classified
Science Policy

description: The results of the included studies through sensitivity analysis. (DOC 98Â kb)
Measuring discourse coherence in anomic aphasia using Rhetorical Structure Theory
Creators: name: Kong, Anthony Pak-Hin
name: Linnik, Anastasia
name: Sam-Po Law
name: Waisa Wai-Man Shum
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified

description: Purpose: The existing body of work regarding discourse coherence in aphasia has provided mixed results, leaving the question of coherence being impaired or intact as a result of brain injury unanswered. In this study, discourse coherence in non-brain-damaged (NBD) speakers and speakers with anomic aphasia was investigated quantitatively and qualitatively. Method: Fifteen native speakers of Cantonese with anomic aphasia and 15 NBD participants produced 60 language samples. Elicitation tasks included story-telling induced by a picture series and a procedural description. The samples were annotated for discourse structure in the framework of Rhetorical Structure Theory (RST) in order to analyse a number of structural parameters. After that 20 naïve listeners rated coherence of each sample. Result: Disordered discourse was rated as significantly less coherent. The NBD group demonstrated a higher production fluency than the participants with aphasia and used a richer set of semantic relations to create discourse, particularly in the description of settings, expression of causality, and extent of elaboration. People with aphasia also tended to omit essential information content. Conclusion: Reduced essential information content, lower degree of elaboration, and a larger amount of structural disruptions may have contributed to the reduced overall discourse coherence in speakers with anomic aphasia.
On the Riemann Hypothesis as Antidote
Creators: name: Smith, John
Publisher: name: figshare
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Quantum Mechanics
subject: 10101 Algebra and Number Theory
subject: FOS: Mathematics

description: In November of 1859, 2 highly influential works were published. One was a 500 page book entitled On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life by Charles Darwin, the other was an 8 page paper by Bernhard Riemann entitled On the Prime Numbers Less Than a Given Quantity. On the face of it, they are unrelated, but it is a great irony that the central idea of Darwin's work (Evolution) is contradicted by the central idea of Riemann's work (The Riemann Hypothesis). In this note, the nature of the contradiction arising from the RH is outlined, and it is argued that Riemann got the better of the unintentional but historic dispute.
Additional file 3: of Sexual dysfunction and mode of delivery in Chinese primiparous women: a systematic review and meta-analysis
Creators: name: Fan, Dazhi
name: Li, Song
name: Wang, Wen
name: Tian, Guo
name: Liu, Li
name: Wu, Song
name: Guo, Xiaoling
name: Liu, Zhengping
Publisher: name: figshare
Year: 2017
Subjects: Medicine
Cell Biology
Biotechnology
Biological Sciences not elsewhere classified
Science Policy

description: The results of the included studies through sensitivity analysis. Figure S1. Sensitivity analysis of 5 studies with the random effects model for sexual satisfaction within 3 months after delivery. Figure S2. Sensitivity analysis of 6 studies with the fixed effects model for sexual satisfaction within 6 months after delivery. Figure S3. Sensitivity analysis of 9 studies with the random effects model for resumed intercourse within 3 months after delivery. Figure S4. Sensitivity analysis of 8 studies with the fixed effects model for resumed intercourse within 6 months after delivery. Figure S5. Sensitivity analysis of 7 studies with the fixed effects model for sexual pain within 3 months after delivery. Figure S6. Sensitivity analysis of 7 studies with the fixed effects model for sexual pain within 6 months after delivery. (DOCX 957 kb)
Additional file 1: Figure S1. of Highly Efficient Inverted Perovskite Solar Cells with CdSe QDs/LiF Electron Transporting Layer
Creators: name: Tan, Furui
name: Xu, Weizhe
name: Hu, Xiaodong
name: Yu, Ping
name: Zhang, Weifeng
Publisher: name: figshare
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: Physical Sciences not elsewhere classified
subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Hematology

description: (a) TEM image of synthesized CdSe quantum dots (QDs), (b) QDs size statistics and (c) XRD pattern of synthesized CdSe QDs. The result shows a wurtzite phase of synthesized material. Figure S2. Light absorption of the synthesized CdSe QDs chlorobenzene solution. Figure S3. I-V performance of solar cell with OA capped CdSe QDs. Figure S4. The best photovoltaic performance of perovskite solar cells with traditional PCBM as ETL.
Cosmological Forecast of the Void Size Function Measurement from the CSST Spectroscopic Survey
Creators: name: Song, Yingxiao
name: Xiong, Qi
name: Gong, Yan
name: Deng, Furen
name: Chan, Kwan Chuen
name: Chen, Xuelei
name: Guo, Qi
name: Han, Jiaxin
name: Li, Guoliang
name: Li, Ming
name: Liu, Yun
name: Luo, Yu
name: Pei, Wenxiang
name: Wei, Chengliang
Publisher: name: arXiv
Year: 2024
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: Void size function (VSF) contains information of the cosmic large-scale structure (LSS), and can be used to derive the properties of dark energy and dark matter. We predict the VSFs measured from the spectroscopic galaxy survey operated by the China Space Station Telescope (CSST), and study the strength of cosmological constraint. We employ a high-resolution Jiutian simulation to get CSST galaxy mock samples based on an improved semi-analytical model. We identify voids from this galaxy catalog using the watershed algorithm without assuming a spherical shape, and estimate the VSFs at different redshift bins from $z=0.5$ to 1.1. We propose a void selection method based on the ellipticity, and assume the void linear underdensity threshold $δ_{\rm v}$ in the theoretical model is redshift-dependent and set it as a free parameter in each redshift bin. The Markov Chain Monte Carlo (MCMC) method is adopted to implement the constraints on the cosmological and void parameters. We find that the CSST VSF measurement can constrain the cosmological parameters to a few percent level. The best-fit values of $δ_{\rm v}$ are ranging from $\sim-0.4$ to $-0.1$ as the redshift increases from 0.5 to 1.1, which has a distinct difference from the theoretical calculation with $δ_{\rm v}\simeq-2.7$ assuming the spherical evolution and using particles as tracer. Our method can provide a good reference for void identification and selection in the VSF analysis of the spectroscopic galaxy surveys.
description: 10 pages, 7 figures, 3 tables. Accepted for publication in MNRAS
title: CFPR: interview avec MRU2021_0094
Creators: name: Delafontaine, François
name: Avanzi, Mathieu
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2021
Subjects: subject: Français
subject: fra

description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Conforms to: Praat textgrid
description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Source: https://nakala.fr/10.34847/nkl.04cfclxt.v3#d0b3693b078336f125975d16d7e5091b3f0c7348
Working memory in school-age children with and without a persistent speech sound disorder
Creators: name: Farquharson, Kelly
name: Hogan, Tiffany P.
name: Bernthal, John E.
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Medicine
subject: Neuroscience
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Purpose: The aim of this study was to explore the role of working memory processes as a possible cognitive underpinning of persistent speech sound disorders (SSD). Method: Forty school-aged children were enrolled; 20 children with persistent SSD (P-SSD) and 20 typically developing children. Children participated in three working memory tasks – one to target each of the components in Baddeley’s working memory model: phonological loop, visual spatial sketchpad and central executive. Result: Children with P-SSD performed poorly only on the phonological loop tasks compared to their typically developing age-matched peers. However, mediation analyses revealed that the relation between working memory and a P-SSD was reliant upon nonverbal intelligence. Conclusion: These results suggest that co-morbid low-average nonverbal intelligence are linked to poor working memory in children with P-SSD. Theoretical and clinical implications are discussed.
Additional file 1: Table S1. of Transcriptomics analysis of the flowering regulatory genes involved in the herbicide resistance of Asia minor bluegrass (Polypogon fugax)
Creators: name: Zhou, Fengyan
name: Zhang, Yong
name: Tang, Wei
name: Wang, Mei
name: Gao, Tongchun
Publisher: name: figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology
subject: Computational Biology

description: Primers used for qRT-PCR. (DOC 63Â kb)
A follow-up letter to The Hon Jason Clare MP, Education Minister, Australia for the conspiracy of life-threatening and PhD harassment in Australian PhD school
Creators: name: Anowar, Md. Anowar Hossain
Publisher: name: Zenodo
Year: 2024

description: Key note of case letter to Education Minister, Australia

A letter was forwarded to the The Hon Jason Clare MP, Education Minister. Professor Dr. Engr. Md. Anowar Hossain, PhD candidate humbly and humbly requested for investigation of conspiracy of life-threatening, removal of unethical PhD suspension, full-term payment of RTP stipend scholarship, life-time safety, a reasonable compensation of life-time income, a reasonable compensation of life-time brain injury, a reasonable compensation of PhD research harassment, a reasonable compensation of official merit growth harassment, a reasonable compensation of academic & professional development harassment in an official platform of PhD research. A Bangladeshi PhD candidate asked to the Australian Education Minister after facing two years and four-month duration academic & professional harassment in RMIT University and Australian Government Offices.
Additional file 1: Table S1. of From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen
Creators: name: Guo, Weina
name: Jelocnik, Martina
name: Li, Jing
name: Sachse, Konrad
name: Polkinghorne, Adam
name: Pannekoek, Yvonne
name: Kaltenboeck, Bernhard
name: Gong, Jiansen
name: You, Jinfeng
name: Wang, Chengming
Publisher: name: figshare
Year: 2017
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: C. gallinacea-positive samples used for MLST and plasmid detection. (DOCX 13Â kb)
THE SECRETS OF PAINTING ARE IN MY EYES
Creators: name: Dildora To'raeva 2nd year student of National Institute of Painting and Design named after Kamoliddin Behzod
Publisher: name: Zenodo
Year: 2024

description: This article talks about the specific features of easel painting, the gradual development of easel painting in Uzbekistan, artists working in easel painting.

Key words: easel, painting, fine art, plastic, nature, artist
title: CFPR: interview avec MAU2021_0093
Creators: name: Delafontaine, François
name: Avanzi, Mathieu
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2021
Subjects: subject: Français
subject: fra

description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Conforms to: Praat textgrid
description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Source: https://nakala.fr/10.34847/nkl.83ee160p.v4#854d8e2dfa7220b5a89bc0c41e7776c45abe49b8
Synthesis of New 1,2,3-triazole Linked Benzimidazole Molecules as Anti-Proliferative Agents
Creators: name: Ishani I. Sahay
name: Prasanna S. Ghalsasi
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Biochemistry
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: One pot Click chemistry is employed to link trizole and benzimidazole pharmacophore to get N-((1-((1H-benzo[d]imidazol-2-yl)methyl)-1H-1,2,3-triazol-4-yl)methyl)aniline and its derivatives. Flexible linkages in the form of –CH2-R or –O-R/ -N-R were designed during synthesis. All the newly synthesized compounds were characterized by FT-IR and NMR spectroscopy as well as high resolution mass spectrometry. 1H NMR study showed interesting fluxional rotation in one of the molecules due to intramolecular hydrogen bonding. Selected compounds were screened for in vitro anti-proliferative activity using NCI (National Cancer Institute)-60-human-tumor-cell line-screening program. The most potent structure N-((1-((1H-benzo[d]imidazol-2-yl)methyl)-1H-1,2,3-triazol-4-yl)methyl)-4-chloroaniline7e showed 40% growth inhibition in renal cancer cell line (UO-31) at 10 µM concentration.
Additional file 2: Table S2. of From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen
Creators: name: Guo, Weina
name: Jelocnik, Martina
name: Li, Jing
name: Sachse, Konrad
name: Polkinghorne, Adam
name: Pannekoek, Yvonne
name: Kaltenboeck, Bernhard
name: Gong, Jiansen
name: You, Jinfeng
name: Wang, Chengming
Publisher: name: figshare
Year: 2017
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: Primers used for generating C. gallinacea plasmid fragments in this study. (DOCX 14Â kb)
DMAP-Catalyzed Cyclization of Schiff Bases with α -halo ketones: Synthesis of 1,4-Benzoxazines
Creators: name: Cuie Wang
name: Xinwei He
name: Xinhua Liu
name: Yongjia Shang
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: We demonstrate that 1,4-benzoxazines can be efficiently synthesized via using 4-dimethylaminopyridine (DMAP) as a catalyst. We found that the DMAP catalyst can successfully promote the incorporation of the activated carbon atoms of α -halo ketones into the Schiff bases. The 1,4-benzoxazines can be synthesized via formation of C-O and C-C bond in high yield, employing the DMAP as the catalyst, α -halo ketones and phenolic Schiff bases as the reactants. Furthermore, a possible mechanism is proposed. This work provides a simple and efficient route to prepare the 1,4-benzoxazines.
Additional file 3: Table S3. of From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen
Creators: name: Guo, Weina
name: Jelocnik, Martina
name: Li, Jing
name: Sachse, Konrad
name: Polkinghorne, Adam
name: Pannekoek, Yvonne
name: Kaltenboeck, Bernhard
name: Gong, Jiansen
name: You, Jinfeng
name: Wang, Chengming
Publisher: name: figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Evolutionary Biology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Primers used for MLST of C. gallinacea in this study. (DOCX 14Â kb)
title: CFPR: interview avec MAU2021_0092
Creators: name: Delafontaine, François
name: Avanzi, Mathieu
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2021
Subjects: subject: Français
subject: fra

description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Conforms to: Praat textgrid
description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Source: https://nakala.fr/10.34847/nkl.4553wpmn.v3#e24d6c83293888538d3e2f3a1f5b08b4660ca860
title: CFPR: interview avec MAU2019_0010
Creators: name: Delafontaine, François
name: Avanzi, Mathieu
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2021
Subjects: subject: Français
subject: fra

description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Conforms to: Praat textgrid
description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Source: https://nakala.fr/10.34847/nkl.e16ci8ai.v4#9498dad1a585278c1863241d8095a1d94ae1671b
Synthesis of new 1,2,3-triazole linked benzimidazole molecules as anti-proliferative agents
Creators: name: Ishani I. Sahay
name: Prasanna S. Ghalsasi
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Biochemistry
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: One pot click chemistry is used to link triazole and benzimidazole pharmacophore to get N-((1-((1H-benzo[d]imidazol-2-yl)methyl)-1H-1,2,3-triazol-4-yl)methyl)aniline and its derivatives. Flexible linkages in the form of –CH2–R or –O–R/–N–R were designed during synthesis. All the newly synthesized compounds were characterized by FT-IR and NMR spectroscopy as well as high-resolution mass spectrometry. Selected compounds were screened for in vitro anti-proliferative activity using National Cancer Institute (NCI)-60 human tumor cell line screening program. The most potent structure N-((1-((1H-benzo[d]imidazol-2-yl)methyl)-1H-1,2,3-triazol-4-yl)methyl)-4-chloroaniline 7e showed 40% growth inhibition in renal cancer cell line (UO-31) at 10 µM concentration.
Additional file 4: Table S4. of From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen
Creators: name: Guo, Weina
name: Jelocnik, Martina
name: Li, Jing
name: Sachse, Konrad
name: Polkinghorne, Adam
name: Pannekoek, Yvonne
name: Kaltenboeck, Bernhard
name: Gong, Jiansen
name: You, Jinfeng
name: Wang, Chengming
Publisher: name: figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology

description: PCR conditions for amplifying seven HK genes in this study. (DOCX 12Â kb)
Additional file 1: Table S1 of Gene gravity-like algorithm for disease gene prediction based on phenotype-specific network
Creators: name: Lin, Limei
name: Yang, Tinghong
name: Fang, Ling
name: Yang, Jian
name: Yang, Fan
name: Zhao, Jing
Publisher: name: figshare
Year: 2017
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Marine Biology
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: The 633 disease genes corresponding to the 113 phenotypes collected from the OMIM database. Table S2. The 572 disease genes corresponding to the 54 diseases which are included in the DisGeNET database (DOCX 68 kb)
High-Yielding Electrophilic Amination Method for Arylcopper Reagents
Creators: name: Daşkapan, Tahir
name: Çiçek, Semra
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Cell Biology
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Plant Biology
subject: FOS: Biological sciences

description: The facilitative effect of some P-, N-, S-, and O-donor ligands in the reaction of arylcoppers with acetone O-(mesitylenesulfonyl)oxime was examined to develop a synthesis method for functionalized primary aryl amines under mild reaction conditions. Our researches showed that electrophilic amination of mono aryl coppers with ketoximes can be facilitated using appropriate ligand to supply significant increase in the yield. Also, we have seen that this ligand-facilitated method is applicable in terms of aryl copper and ketoxime type and allows synthesis of primary aryl amines in good to high yields easily at room temperature in very short reaction time.
DMAP-catalyzed cyclization of Schiff bases with α-halo ketones: Synthesis of 1,4-benzoxazines
Creators: name: Cuie Wang
name: Xinwei He
name: Xinhua Liu
name: Yongjia Shang
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences

description: We demonstrate that 1,4-benzoxazines can be efficiently synthesized using 4-dimethylaminopyridine (DMAP) as a catalyst. We found that the DMAP catalyst can successfully promote the incorporation of the activated carbon atoms of α-halo ketones into the Schiff bases. The 1,4-benzoxazines can be synthesized through the formation of C–O and C–C bonds in high yield, using DMAP as the catalyst, α-halo ketones and phenolic Schiff bases as the reactants. Furthermore, a possible mechanism is proposed. This work provides a simple and efficient route to prepare the 1,4-benzoxazines.
title: CFPR: interview avec MAU2019_0009
Creators: name: Delafontaine, François
name: Avanzi, Mathieu
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2021
Subjects: subject: Français
subject: fra

description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Conforms to: Praat textgrid
description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Source: https://nakala.fr/10.34847/nkl.ccff3b0y.v4#6c2b388df444bb2a3ec4ee1d6292c0eff66c43a7
Salicylaldoxime Functionalized Poly(Ethylene Glycol) Grafted Dicationic Ionic Liquid as a Water-Soluble and Recyclable Ligand for Palladium-Catalyzed Mizoroki-Heck Reactions in Aqueous Phase
Creators: name: Yinglei Wang
name: Xueguo Liu
name: Chaojun Du
name: Zhang, Li
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences

description: A water-soluble salicylaldoxime functionalized poly(ethylene glycol) grafted dicationic ionic liquid was successfully developed as an efficient ligand for palladium acetate catalyzed Mizoroki-Heck reactions in water. A series of aryl bromides and terminal olefin were applied to this catalytic system and the corresponding coupling products were produced in high yields. The reusability tests demonstrated that the catalyst system could be recycled for six runs with only a slightly decreased activity.
High yielding electrophilic amination method for arylcopper reagents
Creators: name: Daşkapan, Tahir
name: Çiçek, Semra
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Cell Biology
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: Plant Biology
subject: FOS: Biological sciences

description: The facilitative effect of some P-, N-, S-, and O-donor ligands in the reaction of arylcoppers with acetone O-(mesitylenesulfonyl)oxime was examined to develop a synthesis method for functionalized primary aryl amines under mild reaction conditions. Our research showed that electrophilic amination of monoaryl coppers with ketoximes can be facilitated using appropriate ligand to supply significant increase in the yield. Also, we have seen that this ligand-facilitated method is applicable in terms of arylcopper and ketoxime type and allows synthesis of primary aryl amines in good to high yields easily at room temperature in very short reaction time.
Solvent and Substituent Effects on the Conversion of 4-methoxypyridines to N-Methyl-4-pyridones
Creators: name: Yi, Xiao
name: Chen, Jing
name: Xiuling Xu
name: Yongmin Ma
Publisher: name: Taylor & Francis
Year: 2020
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Molecular Biology
subject: Pharmacology
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Computational Biology

description: In the reaction of 4-methoxypyridine derivatives with alkyl iodides in the presence or absence of solvent, not only the pyridinium ions but also the related 1-methylpyridones are produced. The presence of solvent favours the formation of the 1-methylpyridone. Electron withdrawing groups on the pyridine ring also favours this conversion. A possible mechanism is presented.
Salicylaldoxime-functionalized poly(ethylene glycol)-grafted dicationic ionic liquid as a water-soluble and recyclable ligand for palladium-catalyzed Mizoroki–Heck reactions in aqueous phase
Creators: name: Yinglei Wang
name: Xueguo Liu
name: Chaojun Du
name: Zhang, Li
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences

description: A water-soluble salicylaldoxime-functionalized poly(ethylene glycol)-grafted dicationic ionic liquid was successfully developed as an efficient ligand for palladium acetate-catalyzed Mizoroki–Heck reactions in water. A series of aryl bromides and terminal olefin were applied to this catalytic system and the corresponding coupling products were produced in high yields. The reusability tests demonstrated that the catalyst system could be recycled for six runs with only a slightly decreased activity.
Solvent and substituent effects on the conversion of 4-methoxypyridines to N-methyl-4-pyridones
Creators: name: Yi, Xiao
name: Chen, Jing
name: Xiuling Xu
name: Yongmin Ma
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: Computational Biology

description: In the reaction of 4-methoxypyridine derivatives with alkyl iodides in the presence or absence of solvent, not only the pyridinium ions but also the related 1-methylpyridones are produced. The presence of solvent favors the formation of the 1-methylpyridone. Electron withdrawing groups on the pyridine ring also favor this conversion. A possible mechanism is presented.
Supplementary Material for: An Analytic Solution to the Computation of Power and Sample Size for Genetic Association Studies under a Pleiotropic Mode of Inheritance
Creators: name: Gordon, D.
name: Londono, D.
name: Patel, P.
name: Kim, W.
name: Finch, S.J.
name: Heiman, G.A.
Publisher: name: Karger Publishers
Year: 2017
Subjects: Medicine

description: Our motivation here is to calculate the power of 3 statistical tests used when there are genetic traits that operate under a pleiotropic mode of inheritance and when qualitative phenotypes are defined by use of thresholds for the multiple quantitative phenotypes. Specifically, we formulate a multivariate function that provides the probability that an individual has a vector of specific quantitative trait values conditional on having a risk locus genotype, and we apply thresholds to define qualitative phenotypes (affected, unaffected) and compute penetrances and conditional genotype frequencies based on the multivariate function. We extend the analytic power and minimum-sample-size-necessary (MSSN) formulas for 2 categorical data-based tests (genotype, linear trend test [LTT]) of genetic association to the pleiotropic model. We further compare the MSSN of the genotype test and the LTT with that of a multivariate ANOVA (Pillai). We approximate the MSSN for statistics by linear models using a factorial design and ANOVA. With ANOVA decomposition, we determine which factors most significantly change the power/MSSN for all statistics. Finally, we determine which test statistics have the smallest MSSN. In this work, MSSN calculations are for 2 traits (bivariate distributions) only (for illustrative purposes). We note that the calculations may be extended to address any number of traits. Our key findings are that the genotype test usually has lower MSSN requirements than the LTT. More inclusive thresholds (top/bottom 25% vs. top/bottom 10%) have higher sample size requirements. The Pillai test has a much larger MSSN than both the genotype test and the LTT, as a result of sample selection. With these formulas, researchers can specify how many subjects they must collect to localize genes for pleiotropic phenotypes.
title: CFPR: interview avec MAR2019_0008
Creators: name: Delafontaine, François
name: Avanzi, Mathieu
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2021
Subjects: subject: Français
subject: fra

description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Conforms to: Praat textgrid
description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Source: https://nakala.fr/10.34847/nkl.bca8yfof.v4#3fb6c8118c0f5739735a39388e5581d7873d4aa4
Modular Wear Facet Nomenclature for mammalian post-canine dentitions
Creators: name: Schultz, Julia A.
name: Menz, Ulrike
name: Winkler, Daniela E.
name: Schulz-Kornas, Ellen
name: Engels, Sandra
name: Kalthoff, Daniela C.
name: Wighart Von Koenigswald
name: Ruf, Irina
name: Kaiser, Thomas M.
name: Kullmer, Ottmar
name: Karl-Heinz Südekum
name: Martin, Thomas
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Medicine
subject: Neuroscience
subject: Biotechnology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Plant Biology

description: Dental wear facets on the occlusal surface of premolars and molars are traces of their main function, the mastication and therefore reflect masticatory movements and also paramasticatory (i.e. non-dietary use of teeth) behavior. Here we present the Modular Wear Facet Nomenclature applicable to most mammalian dentitions. Topographic positions of wear facets in relation to the major cusps and crests of the teeth are used to designate the areas of the occlusal surface the facets occupy (e.g. their mesial, distal, lingual, or buccal position). Previous published systems for labeling wear facets have been inconsistent with each other. Therefore, we provide a synoptic review of the most widely-used terminologies, and introduce the alternative Modular Wear Facet Nomenclature. This nomenclature aims to overcome the difficulties caused by the existing inconsistent wear facet terminologies. Our new approach is applicable to dentitions where the occlusal morphology does not change significantly for most of the lifetime of the animal. In those dentitions, the primary occlusal surfaces are not significantly modified as wear facets become more extensive with wearing. This appears to be a common pattern in pre-tribosphenic, tribosphenic molars, and the teeth derived from tribosphenic precursors (e.g. bunodont molar morphologies). In teeth where the secondary occlusal surface is functionally intensely modified (i.e. high-crowned and evergrowing teeth with large areas of dentine exposed) any facet labeling system appears to be challenging, since the identification of individual facets is blurred and their spatial position may be indeterminable.
Selective interaction of N,N-bis(aminobenzyl)naphthalenediimides with fluoride anion
Creators: name: Ramírez-Zatarain, Sandy D.
name: Ochoa-Terán, Adrián
name: Reynoso-Soto, Edgar A.
name: Miranda-Soto, Valentín
name: R. M. Félix-Navarro
name: Pina-Luis, Georgina
name: Yatsimirsky, Anatoli K.
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Pharmacology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: In this work, the optical properties of N,N-bis(aminobenzyl)naphthalenediimides 2a–2d (BzNDIs) and their interaction with fluoride were studied. The results demonstrated that the amino group position in the benzyl substituent exerts an effect in the absorption and emission properties. Particularly, the N,N-bis(2-aminobenzyl)NDI 2b presented non-typical absorption and emission bands which indicate an intramolecular charge transfer from the amino phenyl group to the NDI core. As the concentration of 2b increases, the solution turns from colourless to a pale orange colour. The interaction of BzNDIs 2a–2d with anions was selective towards fluoride and the affinity was in the order para > ortho > meta with respect to the position of the amino group in the aminophenyl ring. Interestingly, the colour change in the solution of 2b upon addition of fluoride makes it a good candidate for a fluoride colorimetric detection. The voltammetry analysis indicates the ability of these molecules to accept two electrons, in consequence the interaction of two fluoride anions with the BzNDIs was observed.
title: CFPR: interview avec MAR2019_0007
Creators: name: Delafontaine, François
name: Avanzi, Mathieu
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2021
Subjects: subject: Français
subject: fra

description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Conforms to: Praat textgrid
description: Conforms to: doi:10.34847/cocoon.69c4fa74-f324-3ddb-9f1a-580867fd5826
description: Source: https://nakala.fr/10.34847/nkl.a3a3q3b4.v4#96a53abf3e37ea68307f8fbc77fdd2033d0787d9
A Precision-Optimized Fixed-Point Near-Memory Digital Processing Unit for Analog In-Memory Computing
Creators: name: Ferro, Elena
name: Vasilopoulos, Athanasios
name: Lammie, Corey
name: Gallo, Manuel Le
name: Benini, Luca
name: Boybat, Irem
name: Sebastian, Abu
Publisher: name: arXiv
Year: 2024
Subjects: subject: Hardware Architecture (cs.AR)
subject: Emerging Technologies (cs.ET)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: Analog In-Memory Computing (AIMC) is an emerging technology for fast and energy-efficient Deep Learning (DL) inference. However, a certain amount of digital post-processing is required to deal with circuit mismatches and non-idealities associated with the memory devices. Efficient near-memory digital logic is critical to retain the high area/energy efficiency and low latency of AIMC. Existing systems adopt Floating Point 16 (FP16) arithmetic with limited parallelization capability and high latency. To overcome these limitations, we propose a Near-Memory digital Processing Unit (NMPU) based on fixed-point arithmetic. It achieves competitive accuracy and higher computing throughput than previous approaches while minimizing the area overhead. Moreover, the NMPU supports standard DL activation steps, such as ReLU and Batch Normalization. We perform a physical implementation of the NMPU design in a 14 nm CMOS technology and provide detailed performance, power, and area assessments. We validate the efficacy of the NMPU by using data from an AIMC chip and demonstrate that a simulated AIMC system with the proposed NMPU outperforms existing FP16-based implementations, providing 139$\times$ speed-up, 7.8$\times$ smaller area, and a competitive power consumption. Additionally, our approach achieves an inference accuracy of 86.65 %/65.06 %, with an accuracy drop of just 0.12 %/0.4 % compared to the FP16 baseline when benchmarked with ResNet9/ResNet32 networks trained on the CIFAR10/CIFAR100 datasets, respectively.
description: Accepted at ISCAS2024