cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Quantum deconvolution
Creators: name: Bény, Cédric
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We propose a method for stably removing noise from measurements of a quantum many-body system. The question is cast to a linear inverse problem by using a quantum Fischer information metric as figure of merit. This requires the ability to compute the adjoint of the noise channel with respect to the metric, which can be done analytically when the metric is evaluated at a Gaussian (quasi-free) state. This approach can be applied effectively to n-point functions of a quantum field theory. For translation invariant noise, this yields a stable deconvolution method on the first moments of the field which differs from what one would obtain from a purely classical analysis.
Estimating Infection Sources in Networks Using Partial Timestamps
Creators: name: Tang, Wenchang
name: Ji, Feng
name: Tay, Wee Peng
Publisher: name: arXiv
Year: 2017
Subjects: subject: Social and Information Networks (cs.SI)
subject: Physics and Society (physics.soc-ph)
subject: FOS: Computer and information sciences
subject: FOS: Physical sciences

description: We study the problem of identifying infection sources in a network based on the network topology, and a subset of infection timestamps. In the case of a single infection source in a tree network, we derive the maximum likelihood estimator of the source and the unknown diffusion parameters. We then introduce a new heuristic involving an optimization over a parametrized family of Gromov matrices to develop a single source estimation algorithm for general graphs. Compared with the breadth-first search tree heuristic commonly adopted in the literature, simulations demonstrate that our approach achieves better estimation accuracy than several other benchmark algorithms, even though these require more information like the diffusion parameters. We next develop a multiple sources estimation algorithm for general graphs, which first partitions the graph into source candidate clusters, and then applies our single source estimation algorithm to each cluster. We show that if the graph is a tree, then each source candidate cluster contains at least one source. Simulations using synthetic and real networks, and experiments using real-world data suggest that our proposed algorithms are able to estimate the true infection source(s) to within a small number of hops with a small portion of the infection timestamps being observed.
description: 15 pages, 15 figures, accepted by IEEE Transactions on Information Forensics and Security
Interplay between breathing mode distortion and magnetic order in rare-earth nickelates $R$NiO$_3$ within DFT+$U$
Creators: name: Hampel, Alexander
name: Ederer, Claude
Publisher: name: arXiv
Year: 2017
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We present a systematic density functional theory (DFT) plus Hubbard $U$ study of structural trends and the stability of different magnetically ordered states across the rare-earth nickelate series, $R$NiO$_3$, with $R$ from Lu to La. In particular, we investigate how the magnetic order, the change of the rare-earth ion, and the Hubbard interaction $U$ are affecting the bond-length disproportionation between the nickel sites. Our results show that structural parameters can be obtained that are in very good agreement with present experimental data, and that DFT+$U$ is in principle able to capture the most important structural trends across the nickelate series. However, the amplitude of the bond-length disproportionation depends very strongly on the specific value used for the Hubbard $U$ parameter and also on the type of magnetic order imposed in the calculation. Regarding the relative stability of different magnetic orderings, a realistic antiferromagnetic order, consistent with the experimental observations, is favored for small $U$ values, and becomes more and more favorable compared to the ferromagnetic state towards the end of the series (i.e., towards $R$=Pr). Nevertheless, it seems that the stability of the ferromagnetic state is generally overestimated within the DFT+$U$ calculations. Our work provides a profound starting point for more detailed experimental investigations, and also for future studies using more advanced computational techniques such as, e.g., DFT combined with dynamical mean-field theory.
description: 13 pages, 11 figures, 1 table
Asymptotic behavior as $p\rightarrow\infty$ of least energy solutions of a $(p,q(p))$-Laplacian problem
Creators: name: Alves, Claudianor
name: Ercole, Grey
name: Pereira, Gilberto de Assis
Publisher: name: arXiv
Year: 2017
Subjects: subject: Analysis of PDEs (math.AP)
subject: FOS: Mathematics
subject: 35B40, 35D40, 35J20, 35J92, 46E35

description: \[ \left\{ \begin{array} [c]{lll} -\left( Δ_{p}+Δ_{q(p)}\right) u=λ_{p}\left\vert u(x_{u})\right\vert ^{p-2}u(x_{u})δ_{x_{u}} & \mathrm{in} & Ω\\ u=0 & \mathrm{on} & \partialΩ, \end{array} \right. \] where $x_{u}$ is the (unique) maximum point of $\left\vert u\right\vert ,$ $δ_{x_{u}}$ is the Dirac delta distribution supported at $x_{u},$ \[ \lim_{p\rightarrow\infty}\frac{q(p)}{p}=Q\in\left\{ \begin{array} [c]{lll} (0,1) & \mathrm{if} & N0$ is such that \[ \min\left\{ \frac{\left\Vert \nabla u\right\Vert _{\infty}}{\left\Vert u\right\Vert _{\infty}}:0\not \equiv u\in W^{1,\infty}(Ω)\cap C_{0}(\overlineΩ)\right\} \leq\lim_{p\rightarrow\infty}(λ_{p})^{\frac{1}{p}}
description: 27 pages. Some typos were corrected, the final part of the Lemma 4.2's proof was slightly modified
Choreography in the embedded systems domain: A systematic literature review
Creators: name: Taušan, Nebojša
name: Markkula, Jouni
name: Kuvaja, Pasi
name: Oivo, Markku
Publisher: name: arXiv
Year: 2017
Subjects: subject: Software Engineering (cs.SE)
subject: FOS: Computer and information sciences

description: Software companies that develop their products on a basis of service-oriented architecture (SOA) can expect various improvements as a result of choreography. Current choreography practices, however, are not yet used extensively in the embedded systems domain even though SOA is increasingly used in this domain. The objective of this study is to identify current features of the use of choreography in the embedded systems domain for practitioners and researchers by systematically analysing current developments in the scientific literature, strategies for choreography adaption, choreography specification and execution types, and implicit assumptions about choreography. To fulfil this objective, a systematic literature review of scientific publications that focus on the use of choreography in the embedded systems domain was carried out. After screening, 48 publications were selected as primary studies and analysed using thematic synthesis. The main results of the study showed that there are differences in how choreography is used in embedded and non-embedded systems domain. In the embedded systems domain, it is used to capture the service interactions of a single organisation, while, for example, in the enterprise systems domain it captures the service interactions among multiple organisations. Additionally, the results indicate that the use of choreography can lead to improvements in system performance and that the languages that are used for choreography modelling in the embedded systems domain are insufficiently expressive to capture the complexities that are typical in this domain. The study results facilitate the work of practitioners by allowing them to make informed decisions about the applicability of choreography in their organisations.
description: 39 pages, 3 figures, 20 tables
The origin of the bimodal luminosity distribution of ultraluminous X-ray pulsars
Creators: name: Grebenev, S. A.
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: The mechanism that can be responsible for the bimodal luminosity distribution of super-Eddington X-ray pulsars in binary systems is pointed out. The transition from the high to low state of these objects is explained by accretion flow spherization due to the radiation pressure at certain (high) accretion rates. The transition between the states can be associated with a gradual change in the accretion rate. The complex behavior of the recently discovered ultraluminous X-ray pulsars M 82 X-2, NGC 5907 ULX-1, and NGC 7793 P13 is explained by the proposed mechanism. The proposed model also naturally explains the measured spinup of the neutron star in these pulsars, which is slower than the expected one by several times.
description: 15 pages, 2 figures
Additional file 3: of Cysteine peptidases of Eudiplozoon nipponicum: a broad repertoire of structurally assorted cathepsins L in contrast to the scarcity of cathepsins B in an invasive species of haematophagous monogenean of common carp
Creators: name: Jedličková, Lucie
name: Dvořáková, Hana
name: Dvořák, Jan
name: Kašný, Martin
name: Ulrychová, Lenka
name: Jiří Vorel
name: Vojtěch Žárský
name: Mikeš, Libor
Publisher: name: figshare
Year: 2018
Subjects: subject: Molecular Biology
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Marine Biology

description: Specific EnCL1/EnCL3 primers for the synthesis of probes for RNA in situ hybridisation. (PDF 84 kb)
Model Development of Effectiveness Students Care and Support System on Professional Learning Community: Incasing of Ban Phon- Ngam School
Creators: name: Chaowat Phiturongkapitak
Publisher: name: DR.KEN Institute of Academic Development and Promotion
Year: 2022
Subjects: Development
Student Care and Support System
Professional Learning Community

description: International Journal of Sociologies and Anthropologies Science Reviews, 2, 2, 7-16
title: NALBB: Enquête dialectologique à Névez - Questionnaire (1)
Creators: name: Le Dû, Jean
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2013
Subjects: subject: Breton
subject: bre

description: Mme J.T. née en 1908 au village de Kerliou, commune de Névez et sa fille A.T.
description: Conforms to: doi:10.34847/cocoon.49aefa90-8c1f-3ba8-a099-0ebefc6a2aa7
Additional file 2: of Cysteine peptidases of Eudiplozoon nipponicum: a broad repertoire of structurally assorted cathepsins L in contrast to the scarcity of cathepsins B in an invasive species of haematophagous monogenean of common carp
Creators: name: Jedličková, Lucie
name: Dvořáková, Hana
name: Dvořák, Jan
name: Kašný, Martin
name: Ulrychová, Lenka
name: Jiří Vorel
name: Vojtěch Žárský
name: Mikeš, Libor
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Primers for the expression of brEnCL1 in E. coli. (PDF 83 kb)
Effective horizons, junction conditions and large-scale magnetism
Creators: name: Giovannini, Massimo
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The quantum mechanical generation of hypermagnetic and hyperlectric fields in four-dimensional conformally flat background geometries rests on the simultaneous continuity of the effective horizon and of the extrinsic curvature across the inflationary boundary. The junction conditions for the gauge fields are derived in general terms and corroborated by explicit examples with particular attention to the limit of a sudden (but nonetheless continuous) transition of the effective horizon. After reducing the dynamics to a pair of integral equations related by duality transformations, we compute the power spectra and deduce a novel class of logarithmic corrections which turn out to be, however, numerically insignificant and overwhelmed by the conductivity effects once the gauge modes reenter the effective horizon. In this perspective the magnetogenesis requirements and the role of the postinflationary conductivity are clarified and reappraised. As long as the total duration of the inflationary phase is nearly minimal, quasi-flat hypermagnetic power spectra are comparatively more common than in the case of vacuum initial data.
description: 12 pages, 1 figure
title: NALBB: Enquête dialectologique à Névez - Questionnaire (2)
Creators: name: Le Dû, Jean
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2013
Subjects: subject: Breton
subject: bre

description: Mme J.T. née en 1908 au village de Kerliou, commune de Névez et sa fille A.T.
description: Conforms to: doi:10.34847/cocoon.49aefa90-8c1f-3ba8-a099-0ebefc6a2aa7
Joint Weakly and Semi-Supervised Deep Learning for Localization and Classification of Masses in Breast Ultrasound Images
Creators: name: Shin, Seung Yeon
name: Lee, Soochahn
name: Yun, Il Dong
name: Kim, Sun Mi
name: Lee, Kyoung Mu
Publisher: name: arXiv
Year: 2017
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: We propose a framework for localization and classification of masses in breast ultrasound (BUS) images. We have experimentally found that training convolutional neural network based mass detectors with large, weakly annotated datasets presents a non-trivial problem, while overfitting may occur with those trained with small, strongly annotated datasets. To overcome these problems, we use a weakly annotated dataset together with a smaller strongly annotated dataset in a hybrid manner. We propose a systematic weakly and semi-supervised training scenario with appropriate training loss selection. Experimental results show that the proposed method can successfully localize and classify masses with less annotation effort. The results trained with only 10 strongly annotated images along with weakly annotated images were comparable to results trained from 800 strongly annotated images, with the 95% confidence interval of difference -3.00%--5.00%, in terms of the correct localization (CorLoc) measure, which is the ratio of images with intersection over union with ground truth higher than 0.5. With the same number of strongly annotated images, additional weakly annotated images can be incorporated to give a 4.5% point increase in CorLoc, from 80.00% to 84.50% (with 95% confidence intervals 76.00%--83.75% and 81.00%--88.00%). The effects of different algorithmic details and varied amount of data are presented through ablative analysis.
description: Accepted to IEEE Transactions on Medical Imaging
Additional file 3: of Characterization of the human RFX transcription factor family by regulatory and target gene analysis
Creators: name: Sugiaman-Trapman, Debora
name: Morana Vitezic
name: Eeva-Mari Jouhilahti
name: Mathelier, Anthony
name: Lauter, Gilbert
name: Sougat Misra
name: Daub, Carsten
name: Kere, Juha
name: Swoboda, Peter
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology
subject: 110309 Infectious Diseases
subject: Plant Biology
subject: Computational Biology

description: Supporting tables, figures and supplementary references. Table S1. Summary of RFX1–8 expression data and novel transcript validation. Table S2. Positions of functional domains encoded by RFX transcripts. Table S3. Experimentally proven, direct RFX target genes in humans from the literature. Table S4. Human X-box motifs selected from the JASPAR database. Table S5. Experimentally validated human X-box motif sequences in promoter regions that were captured by the scanning criteria. Table S6. Experimentally validated human X-box motif sequences that were either in distal regions or that were not captured by the scanning criteria. Table S7. RFX correlated enhancers within +/− 500 kb of RFX TSS locations. Table S8. Primer sequences for novel RFX transcripts validation. Table S9. Verified novel RFX transcript sequences. Table S10. siRNA sequences for candidate RFX regulators. Table S11. qPCR primer sequences and amplification efficiencies for validation of candidate RFX regulators. Figure S1. Human RFX1–8 DBD protein sequence alignment. Supplementary references. (DOCX 424 kb)
Wave steering effects in anisotropic composite structures: Direct calculation of the energy skew angle through a finite element scheme
Creators: name: Chronopoulos, D.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Applied Physics (physics.app-ph)
subject: FOS: Physical sciences

description: A systematic expression quantifying the wave energy skewing phenomenon as a function of the mechanical characteristics of a non-isotropic structure is derived in this study. A structure of arbitrary anisotropy, layering and geometric complexity is modelled through Finite Elements (FEs) coupled to a periodic structure wave scheme. A generic approach for efficiently computing the angular sensitivity of the wave slowness for each wave type, direction and frequency is presented. The approach does not involve any finite differentiation scheme and is therefore computationally efficient and not prone to the associated numerical errors.
Band splitting in bilayer stanene electronic structure scrutinized via first principle DFT calculations
Creators: name: Ghadiyali, Mohammed
name: Chacko, Sajeev
Publisher: name: arXiv
Year: 2017
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The recent work on stanene as quantum spin Hall insulators made us investigate bilayer stanene using first principle calculations. With an aim of improving and developing new properties, via modulating the stacking order (and angle) of the bilayers. This stacking of layers has been proven technique for modulating the properties of monolayer materials. Here we design multiple bilayer systems, with different stacking angles and AA and AB configurations. Rather observing an improvement in bandgap due to spin-orbit coupling (SOC), we witness a splitting of the band due to SOC, a characteristic behavior of stacked MoS2 sheets. This splitting of the bands gives rise to different, independent and distinct spin-up and spin-down channels, manifesting a valley dependent spin polarization. Also, as a contrast to stacked MoS2 system we notice in our system the stacking angle and order, does effect electronic states.
description: 11 pages, 6 figures
Does a positive density perception increase the probability of living in the ideal housing type? Evidence from the Loire-Atlantique Département in France
Creators: name: Le Boennec, Rémy
name: Lucas, Sterenn
name: Le Boennec, Rémy
name: Lucas, Sterenn
Publisher: name: Unknown
Year: 2020
Subjects: subject: Community/Rural/Urban Development
subject: housing type
subject: density perception
subject: district perception
subject: built-up density
subject: mixed-effect probit model

description: What does the ideal housing type look like? A 2015 online survey of individuals living in the Loire-Atlantique Département in France provided 1,134 interviews, which we analyze using a mixed-effect probit model. We look at the probability of living in the ideal housing type related to 28 variables of dwelling and respondent characteristics, density perception, district perception, type of municipality, and proximity to education, healthcare and food facilities. The issue is important because certain housing types yield greater land consumption and longer trips. Local governments support infill developments with higher built-up density levels to conserve land and support walking, cycling, and transit. We find that the probability of living in the ideal housing type has no relationship to density perception. What matters is a positive district perception and proximity to healthcare. Well-designed infill development with higher built-up density levels can succeed, associating a higher probability of living in the ideal housing type with suitable urban forms given the physical constraints of territories, in a sustainable development framework.
Additional file 3: of Comparison of discriminative motif optimization using matrix and DNA shape-based models
Creators: name: Shuxiang Ruan
name: Stormo, Gary
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Plant Biology
subject: Computational Biology

description: Table S3. Scores for the motif optimization algorithms on ChIP-seq data with small training sets. (DOCX 12 kb)
Shortcut to adiabaticity in a Stern-Gerlach apparatus
Creators: name: Impens, François
name: Guéry-Odelin, David
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We show that the performances of a Stern-Gerlach apparatus can be improved by using a magnetic field profile for the atomic spin evolution designed through shortcut to adiabaticity technique. Interestingly, it can be made more compact - for atomic beams propagating at a given velocity - and more resilient to a dispersion in velocity, in comparison with the results obtained with a standard uniform rotation of the magnetic field. Our results are obtained using a reverse engineering approach based on Lewis-Riesenfeld invariants. We discuss quantitatively the advantages offered by our configuration in terms of the resources involved and show that it drastically enhances the fidelity of the quantum state transfer achieved by the Stern-Gerlach device.
description: 8 pages, 5 Figures
title: NALBB: Enquête dialectologique à Riec-sur-Belon - Questionnaire (1)
Creators: name: Le Dû, Jean
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2013
Subjects: subject: Breton
subject: bre

description: Mr C.L.G., né en 1892 au village de Trémor, commune de Riec-sur-Belon
description: Conforms to: doi:10.34847/cocoon.49aefa90-8c1f-3ba8-a099-0ebefc6a2aa7
Additional file 1 of Genetic Analysis of S5-Interacting Genes Regulating Hybrid Sterility in Rice
Creators: name: Rao, Jianglei
name: Wang, Xing
name: Cai, Zhongquan
name: Fan, Yourong
name: Yang, Jiangyi
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Figure S1. Detection of ORF5+ transgenic plants. Figure S2. Genetic linkage map of the F2 population derived from the cross between Dular and BalillaORF5+. Figure S3. Additional mapping of qSIG3.1. Figure S4 Genotype of BC3F3 individuals with high SF. Figure S5. Rice genome 6 K-microarray analysis of 18MR47–17 and 18MR47–19. Table S1. Detailed information of primers. Table S2. Detailed information of NILs for each locus. Table S3. Genotypes of 173 F2 individual plants for two flank markers of qSIG5.1. Table S4. SF and genotypes of plants in different generations.
Additional file 1: of Cysteine peptidases of Eudiplozoon nipponicum: a broad repertoire of structurally assorted cathepsins L in contrast to the scarcity of cathepsins B in an invasive species of haematophagous monogenean of common carp
Creators: name: Jedličková, Lucie
name: Dvořáková, Hana
name: Dvořák, Jan
name: Kašný, Martin
name: Ulrychová, Lenka
name: Jiří Vorel
name: Vojtěch Žárský
name: Mikeš, Libor
Publisher: name: figshare
Year: 2018
Subjects: subject: Molecular Biology
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Marine Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Primers for the expression of yrEnCL1, yrEnCL3, and yrEnCB in P. pastoris. (PDF 239 kb)
Optimal convex approximations of quantum states
Creators: name: Sacchi, Massimiliano F.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We consider the problem of optimally approximating an unavailable quantum state $ρ$ by the convex mixing of states drawn from a set of available states $\{ ν_i\}$. The problem is recast to look for the least distinguishable state from $ρ$ among the convex set $\sum_i p_i ν_i$, and the corresponding optimal weights $\{ p_i \}$ provide the optimal convex mixing. We present the complete solution for the optimal convex approximation of a qubit mixed state when the set of available states comprises the three bases of the Pauli matrices.
description: 5 pages; 2 figures; added the section 'Addendum' and a reference to X.-B. Liang, B. Li, and S.-M. Fei, Phys. Rev. A 99, 016301 (2019), which corrects some results of Sec. III
title: NALBB: Enquête dialectologique à Riec-sur-Belon - Questionnaire (2)
Creators: name: Le Dû, Jean
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2013
Subjects: subject: Breton
subject: bre

description: Mr C.L.G., né en 1892 au village de Trémor, commune de Riec-sur-Belon
description: Conforms to: doi:10.34847/cocoon.49aefa90-8c1f-3ba8-a099-0ebefc6a2aa7
Polyhydroxyalkanoates production at pilot scale using fruit waste: enhancing feeding strategies and monitoring
Creators: name: Silva, Fernando
name: Pereira, Bruno
name: Ralo, Claudia
name: Matos, Mariana
name: Marques, Nuno
name: Carvalho, Gilda
name: Nídia Lourenço
name: Reis, Maria
Publisher: name: Zenodo
Year: 2019

description: Presentation at 10th European Symposium on Biopolymers 2019
Visualization and analysis of probability distributions of large temporal data
Creators: name: GUPTA, SAYANI
Publisher: name: Monash University
Year: 2022
Subjects: subject: Statistics
subject: FOS: Mathematics
subject: 10401 Applied Statistics

description: Increasingly, data is recorded at much finer temporal scales. However, data collected at an hourly scale can also be analyzed using coarser scales such as days, months or quarters. Cyclic granularities representing repetitions in time (such as hour-of-the-day, day-of-the-week, work-day/weekend) are effective for analyzing repetitive patterns in time series data. To fully comprehend these patterns, one must traverse all cyclic granularities. This is difficult with many options but only few of them revealing major patterns. This thesis presents methods for screening the interesting ones and then visualizing the distributions to support the discovery of regular patterns and clusters of behaviours.
Use of synthetic circular RNA spike-ins (SynCRS) for normalization of circular RNA sequencing data
Creators: name: Conn, Vanessa
name: Liu, Ryan
name: Gabryelska, Marta
name: Conn, Simon
Publisher: name: Zenodo
Year: 2024

description: GTF and fasta files for addition of 6 SynCRS to genome annotation files fit for GENCODE, ensembl and UCSC. SyNCRS synthetic sequences added in txt format.
Additional file 1 of Prediction of mechanical ventilation greater than 24 hours in critically ill obstetric patients: ten years of data from a tertiary teaching hospital in mainland China
Creators: name: Zhao, Huiying
name: Wang, Guangjie
name: Lyu, Jie
name: Zhang, Xiaohong
name: An, Youzhong
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified

description: Additional file 1. Multicollinearity test of risk factors for prolonged mechanical ventilation.
Thermodynamic constraints on a varying cosmological-constant-like term from the holographic equipartition law with a power-law corrected entropy
Creators: name: Komatsu, Nobuyoshi
Publisher: name: arXiv
Year: 2017
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: A power-law corrected entropy based on a quantum entanglement is considered to be a viable black-hole entropy. In this study, as an alternative to Bekenstein-Hawking entropy, a power-law corrected entropy is applied to Padmanabhan's holographic equipartition law to thermodynamically examine an extra driving term in the cosmological equations for a flat Friedmann-Robertson-Walker universe at late times. Deviations from the Bekenstein-Hawking entropy generate an extra driving term (proportional to the $α$-th power of the Hubble parameter, where $α$ is a dimensionless constant for the power-law correction) in the acceleration equation, which can be derived from the holographic equipartition law. Interestingly, the value of the extra driving term in the present model is constrained by the second law of thermodynamics. From the thermodynamic constraint, the order of the driving term is found to be consistent with the order of the cosmological constant measured by observations. In addition, the driving term tends to be constant-like when $α$ is small, i.e., when the deviation from the Bekenstein-Hawking entropy is small.
description: Final version accepted for publication in PRD. Several pasragraphs are added and revised. [9 pages, 2 figures]
Additional file 1: of Practice patterns and determinants of wait time for autism spectrum disorder diagnosis in Canada
Creators: name: Penner, Melanie
name: Anagnostou, Evdokia
name: Ungar, Wendy
Publisher: name: figshare
Year: 2018
Subjects: subject: Molecular Biology
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified

description: Survey distributed to Canadian Paediatric Society. (DOCX 22 kb)
title: The Effect of Comb Architecture on Complex Coacervation
Creators: name: Johnston, Brandon M.
name: Johnston, Cameron W.
name: Letteri, Rachel A.
name: Lytle, Tyler K.
name: Sing, Charles E.
name: Emrick, Todd
name: Perry, Sarah L.
Publisher: name: University of Massachusetts Amherst
Year: 2017
Subjects: subject: Chemical Engineering
subject: FOS: Chemical engineering
subject: Other Engineering
subject: FOS: Other engineering and technologies

description: Org. Biomol. Chem., 2017, Accepted Manuscript
description: Complex coacervation is a widely utilized technique for effecting phase separation, though predictive understanding of molecular-level details remains underdeveloped. Here, we couple coarse-grained Monte Carlo simulations with experimental efforts using a polypeptide-based model system to investigate how a comb-like architecture affects complex coacervation and coacervate stability. Specifically, the phase separation behavior of linear polycation-linear polyanion pairs was compared to that of comb polycation-linear polyanion and comb polycation-comb polyanion pairs. The comb architecture was found to mitigate cooperative interactions between oppositely charged polymers, as no discernible phase separation was observed for comb-comb pairs and complex coacervation of linear-linear pairs yielded stable coacervates at higher salt concentration than linear-comb pairs. This behavior was attributed to differences in counterion release by linear vs. comb polymers during polyeletrolyte complexation. Additionally, the comb polycation formed coacervates with both stereoregular poly(L-glutamate) and racemic poly(D,L-glutamate), whereas the linear polycation formed coacervates only with the racemic polyanion. In contrast, solid precipitates were obtained from mixtures of stereoregular poly(L-lysine) and poly(L-glutamate). Moreover, the formation of coacervates from cationic comb polymers incorporating up to ~90% pendant zwitterionic groups demonstrated the potential for inclusion of comonomers to modulate the hydrophilicity and/or other properties of a coacervate-forming polymer. These results provide the first detailed investigation into the role of polymer architecture on complex coacervation using a chemically and architecturally well-defined model system, and highlight the need for additional research on this topic.
Additional file 1: of Recovery of facial expressions using functional electrical stimulation after full-face transplantation
Creators: name: Çağdaş Topçu
name: Uysal, Hilmi
name: Özkan, Ömer
name: Özlenen Özkan
name: Övünç Polat
name: Bedeloğlu, Merve
name: Akgül, Arzu
name: Döğer, Ela
name: Sever, Refik
name: Çolak, Ömer
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Ecology
subject: Developmental Biology
subject: Marine Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Recovery of facial expressions using functional electrical stimulation after full-face transplantation. (DOCX 6090 kb)
Additional file 2: of Comparison of discriminative motif optimization using matrix and DNA shape-based models
Creators: name: Shuxiang Ruan
name: Stormo, Gary
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Computational Biology

description: Table S2. Effect of Method for Generating Negative Sequences on Training and Testing Scores. (DOCX 13 kb)
The Cosmic Axion Spin Precession Experiment (CASPEr): a dark-matter search with nuclear magnetic resonance
Creators: name: Garcon, Antoine
name: Aybas, Deniz
name: Blanchard, John W.
name: Centers, Gary
name: Figueroa, Nataniel L.
name: Graham, Peter W.
name: Kimball, Derek F. Jackson
name: Rajendran, Surjeet
name: Sendra, Marina Gil
name: Sushkov, Alexander O.
name: Trahms, Lutz
name: Wang, Tao
name: Wickenbrock, Arne
name: Wu, Teng
name: Budker, Dmitry
Publisher: name: arXiv
Year: 2017
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: Applied Physics (physics.app-ph)
subject: Data Analysis, Statistics and Probability (physics.data-an)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The Cosmic Axion Spin Precession Experiment (CASPEr) is a nuclear magnetic resonance experiment (NMR) seeking to detect axion and axion-like particles which could make up the dark matter present in the universe. We review the predicted couplings of axions and axion-like particles with baryonic matter that enable their detection via NMR. We then describe two measurement schemes being implemented in CASPEr. The first method, presented in the original CASPEr proposal, consists of a resonant search via continuous-wave NMR spectroscopy. This method offers the highest sensitivity for frequencies ranging from a few Hz to hundreds of MHz, corresponding to masses $ m_{\rm a} \sim 10^{-14}$--$10^{-6}$ eV. Sub-Hz frequencies are typically difficult to probe with NMR due to the diminishing sensitivity of magnetometers in this region. To circumvent this limitation, we suggest new detection and data processing modalities. We describe a non-resonant frequency-modulation detection scheme, enabling searches from mHz to Hz frequencies ($m_{\rm a} \sim 10^{-17}$--$10^{-14} $ eV), extending the detection bandwidth by three decades.
Additional file 2: of Characterization of the human RFX transcription factor family by regulatory and target gene analysis
Creators: name: Sugiaman-Trapman, Debora
name: Morana Vitezic
name: Eeva-Mari Jouhilahti
name: Mathelier, Anthony
name: Lauter, Gilbert
name: Sougat Misra
name: Daub, Carsten
name: Kere, Juha
name: Swoboda, Peter
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Inorganic Chemistry
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: Computational Biology

description: Hierarchical clustering, expression plots and top 10 tissues, primary cells and cell lines of RFX TSS locations. Hierarchical clustering of 30 RFX TSS locations (with shorthand p for promoter) based on expression values (TPM) across 135 human tissue samples, using a 1-Pearson correlation distance measure and average linkage method, as computed by the pvclust R package with nboot = 1000 with the numbers representing approximately unbiased (au) p-values (Suzuki and Shimodaira, 2006). Tissue clusters are color-coded and represent the groups of tissues with the highest overall expression values: immune system (teal), gastrointestinal tract (purple), testis (green), brain and spinal cord (red), and two minor clusters, uterus and lung (black). RFX TSS locations without color code have low expression values (TPM
title: Monats-Berichte des Statistischen Amtes der Stadt Zürich 1912
title: Monatsberichte des Statistischen Amtes der Stadt Zürich
titleType: AlternativeTitle
Creators: name: (:Unkn) Unknown
Publisher: name: Buchdruckerei Berichthaus
Year: 1913
Subjects: subject: 314 Allgemeine Statistiken zu Europa
subject: 330 Wirtschaft
subject: Zürich
subject: Amtliche Statistik
subject: Bevölkerungsstatistik

description: Enthält: Jahres-Zusammenfassung und Nr. 1-12 (Januar-Dezember).
title: 01_0831
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
Enhanced electromagnetic correction to the rare $B$-meson decay $B_{s,d} \to μ^+ μ^-$
Creators: name: Beneke, Martin
name: Bobeth, Christoph
name: Szafron, Robert
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We investigate electromagnetic corrections to the rare $B$-meson leptonic decay $B_{s,d} \to μ^+μ^-$ from scales below the bottom-quark mass $m_b$. Contrary to QCD effects, which are entirely contained in the $B$-meson decay constant, we find that virtual photon exchange can probe the $B$-meson structure, resulting in a "non-local annihilation" effect. We find that this effect gives rise to a dynamical enhancement by a power of $m_b/Λ_{\rm QCD}$ and by large logarithms. The impact of this novel effect on the branching ratio of $B_{s,d}\toμ^+μ^-$ is about $1\%$, of the order of the previously estimated non-parametric theoretical uncertainty, and four times the size of previous estimates of next-to-leading order QED effects due to residual scale dependence. We update the Standard Model prediction to $\overline{\cal B}(B_s \to μ^+μ^-)_{\rm SM} = (3.57 \pm 0.17) \cdot 10^{-9}$.
Additional file 1: of Survival benefit of a low ratio of visceral to subcutaneous adipose tissue depends on LDL clearance versus production in sepsis
Creators: name: Lee, Joseph
name: Genga, Kelly
name: Chawika Pisitsak
name: Boyd, John
name: Leung, Alex
name: Russell, James
name: Walley, Keith
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: 60506 Virology

description: Table S1. Statin subtypes and dosages. Figure S1. Cholesterol levels according to VAT/SAT groups. Higher cholesterol levels were observed in the low VAT/SAT group (n = 36) than high VAT/SAT group (n = 37) (p = 0.005). Figure S2A. Cholesterol levels in untreated control patients according to VAT/SAT groups. In control untreated patients (n = 50), low VAT/SAT group (n = 28) had higher cholesterol levels than high VAT/SAT group (n = 22) (p = 0.009). Figure S2B. Cholesterol levels in statin treated patients according to VAT/SAT groups. Patients on statin treatment (n = 23) showed no difference in cholesterol levels between low (n = 8) and high VAT/SAT (n = 15) groups (p value not significant). Figure S3A. Cholesterol levels in WT genotype patients according to VAT/SAT groups. Patients with WT genotype (n = 34) had higher cholesterol levels in the low VAT/SAT group (n = 15) compared to the high VAT/SAT group (n = 19) (p = 0.001). Figure S3B. Cholesterol levels in patients with the PCSK9 LOF genotype according to VAT/SAT group. No differences in cholesterol levels were observed between the low (n = 20) and high VAT/SAT (n = 15) group in patients with PCSK9 LOF (n = 35) (p value not significant). Figure S4A. Patients with low VAT/SAT (n = 36) who have been treated with statins (n = 8) have lower LDL levels than untreated control patients (n = 28) (p = 0.046). Figure S4B. Patients with low VAT/SAT with PCSK9 LOF genotype (n = 20) have lower LDL levels than WT patients (n = 15) (p = 0.028). Figure S5A. In patients with low VAT/SAT, there is no significant difference in survival between the untreated control (n = 28) and statin-treated groups (n = 8) (p = 0.485). Figure S5B. Patients with low VAT/SAT who have the PCSK9 LOF genotype (n = 20) have increased survival compared to patients with WT (n = 15) (p = 0.043). Figure S6. In patients with high VAT/SAT (n = 37), statin treatment did not demonstrate a survival benefit compared to the untreated control groups (p = 0.410). (DOCX 641 kb)
Magnetotransport properties of MoP$_2$
Creators: name: Wang, Aifeng
name: Graf, D.
name: Liu, Yu
name: Petrovic, C.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We report magnetotransport and de Haas-van Alphen (dHvA) effect studies on MoP$_2$ single crystals, predicted to be type-2 Weyl semimetal with four pairs of robust Weyl points located below the Fermi level and long Fermi arcs. The temperature dependence of resistivity shows a peak before saturation, which does not move with magnetic field. Large nonsaturating magnetoresistance (MR) was observed, and the field dependence of MR exhibits a crossover from semicalssical weak-field $B^2$ dependence to the high-field linear-field dependence, indicating the presence of Dirac linear energy dispersion. In addition, systematic violation of Kohler's rule was observed, consistent with multiband electronic transport. Strong spin-orbit coupling (SOC) splitting has an effect on dHvA measurements whereas the angular-dependent dHvA orbit frequencies agree well with the calculated Fermi surface. The cyclotron effective mass $\sim$ 1.6$m_e$ indicates the bands might be trivial, possibly since the Weyl points are located below the Fermi level. Interestingly, quasi-two dimensional(2D) band structure is observed even though the crystal structure of MoP$_2$ is not layered.
Stress in nurses’ caring for stroke patients and families: a mixed-method study
Creators: name: Saramago, Ines
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Medicine and Health Sciences
subject: Other Nursing
subject: Nursing
subject: FOS: Health sciences
subject: Perceived stress scale
subject: stress
subject: stroke
subject: survey

description: Data collected from surveys for the research article "Stress in nurses’ caring for stroke patients and families: a mixed-method study"
Effects of duration of follow-up and lag in data collection on the performance of adaptive clinical trials
Creators: name: Granholm, Anders
name: Harhay, Michael O.
name: Lange, Theis
name: Kaas-Hansen, Benjamin Skov
name: Moller, Morten Hylander
name: Perner, Anders
Publisher: name: Open Science Framework
Year: 2023
Subjects: subject: Clinical Trials
subject: Medicine and Health Sciences
subject: Statistics and Probability
subject: Statistical Methodology
subject: Physical Sciences and Mathematics
subject: Design of Experiments and Sample Surveys
subject: Biostatistics

description: This registration contains the protocol and statistical analysis plan for a simulation study assessing the effects of duration of follow-up and lag in data collection on the performance of adaptive clinical trials. Protocol version 2023-02-09 included as a PDF below and under "Files".
title: Le cerf volant
Creators: name: Carton, Fernand
Publisher: name: COCOON - https://cocoon.huma-num.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2011
Subjects: subject: Picard
subject: pcd

description: Conforms to: doi:10.34847/cocoon.49aefa90-8c1f-3ba8-a099-0ebefc6a2aa7