cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 3 of Candidate biomarkers for treatment benefit from sunitinib in patients with advanced renal cell carcinoma using mass spectrometry-based (phospho)proteomics
Creators: name: van der Wijngaart, Hanneke
name: Beekhof, Robin
name: Knol, Jaco C.
name: Henneman, Alex A.
name: de Goeij-de Haas, Richard
name: Piersma, Sander R.
name: Pham, Thang V.
name: Jimenez, Connie R.
name: Verheul, Henk M. W.
name: Labots, Mariette
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Additional file 3: Figure S3. Phosphosite interaction network of sensitive and resistant patients. Phosphosite (p-site) interaction network. Using STRING and visualization in Cytoscape, a functional p-site cluster is shown of differentially expressed and unique p-sites in sensitive and resistant patients. Nodes correspond to upregulated p-sites. Green nodes represent p-sites differentially upregulated in tumors sensitive to sunitinib (n=21) and black nodes represent p-sites uniquely identified in tumors sensitive to sunitinib (n=35). Pink nodes represent p-sites differentially upregulated in tumors resistant to sunitinib (n=18) and purple nodes represent p-sites uniquely identified in tumors resistant to sunitinib (n=4). The differential p-sites in this figure are filtered for p < 0.05 & |FC| > 2. The unique p-sites in this figure are filtered for ≥30% data presence in the group with highest abundance. The p-site MAPK1_Y187 is identified twice: once through quantification of a mono-phosphorylated peptide (FC = − 3.81) and once through quantification of a diphosphorylated peptide (FC = − 5.57).
"Dust, Ice, and Gas In Time" (DIGIT) Herschel Observations of GSS30-IRS1 in Ophiuchus
Creators: name: Je, Hyerin
name: Lee, Jeong-Eun
name: Lee, Seokho
name: Green, Joel D.
name: Evans, Neal J.
Publisher: name: arXiv
Year: 2015
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: As a part of the "Dust, Ice, and Gas In Time" (DIGIT) key program on Herschel, we observed GSS30-IRS1, a Class I protostar located in Ophiuchus (d = 120 pc), with Herschel/Photodetector Array Camera and Spectrometer (PACS). More than 70 lines were detected within a wavelength range from 50 micron to 200 micron, including CO, H2O, OH, and two atomic [O I] lines at 63 and 145 micron. The [C II] line, known as a tracer of externally heated gas by the interstellar radiation field, is also detected at 158 micron. All lines, except [O I] and [C II], are detected only at the central spaxel of 9.4" X 9.4". The [O I] emissions are extended along a NE-SW orientation, and the [C II] line is detected over all spaxels, indicative of external PDR. The total [C II] intensity around GSS30 reveals that the far-ultraviolet radiation field is in the range of 3 to 20 G0, where G0 is in units of the Habing Field, 1.6 X 10^{-3} erg cm^{-2} s^{-1}. This enhanced external radiation field heats the envelope of GSS30-IRS1, causing the continuum emission to be extended, unlike the molecular emission. The best-fit continuum model of GSS30-IRS1 with the physical structure including flared disk, envelope, and outflow shows that the internal luminosity is 10 Lsun, and the region is externally heated by a radiation field enhanced by a factor of 130 compared to the standard local interstellar radiation field.
description: 63 pages, 25 figures, accepted for publication in ApJS
Additional file 4 of Candidate biomarkers for treatment benefit from sunitinib in patients with advanced renal cell carcinoma using mass spectrometry-based (phospho)proteomics
Creators: name: van der Wijngaart, Hanneke
name: Beekhof, Robin
name: Knol, Jaco C.
name: Henneman, Alex A.
name: de Goeij-de Haas, Richard
name: Piersma, Sander R.
name: Pham, Thang V.
name: Jimenez, Connie R.
name: Verheul, Henk M. W.
name: Labots, Mariette
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Additional file 4: Figure S4. Ranking of most activated kinases per sample. Ranking of the top 20 active kinases (Y-axis) in tumors from 16 sensitive and 7 resistant patients. Bar graphs depict kinase ranking based on combined INKA scores of kinase- and substrate-centric analysis of tyrosine phosphoproteomics24. X-axis represents the INKA score for each kinase. Differentially activated kinases between the two groups (Figure 1c) are highlighted with dark (EGFR, MAPK3) and light (INSR/IGF1R) green coloring.
Effects of annealing on the fluctuation conductivity and pseudogap in slightly doped $HoBa_2Cu_3O_{7-δ}$ single crystals
Creators: name: Solovjov, A. L.
name: Omelchenko, L. V.
name: Petrenko, E. V.
name: Kolesnichenko, Yu. A.
name: Kolesnik, A. S.
name: Dzhumanov, S.
name: Vovk, R. V.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: The effect of annealing at room temperature on the fluctuation conductivity (FLC) $σ^\prime(T)$ and pseudogap (PG) $Δ^*(T)$ in the basal ab plane of $ReBa_2Cu_3O_{7-δ}$ (Re = Ho) single crystals with a lack of oxygen has been studied. It is shown that at all stages of annealing, the FLC near $T_c$ can be described by the Aslamazov$-$Larkin and Maki$-$Thompson fluctuation theories, demonstrating a 3D$-$2D crossover with increasing temperature. The crossover temperature $T_0$ was used to determine the coherence length along the $c$-axis, $ξ_c(0)$=2.82 A. At the inter-mediate stage of annealing, an anomalous increase in 2D FLC was revealed, which is associated with the influence of uncompensated magnetic moments in $HoBa_2Cu_3O_{7-δ}$ (HoBCO): $μ_{eff, Ho}$=9.7$μ_{B}$. For the quenched sample S1, the temperature dependence of the PG has a shape typical of single crystals with a large number of defects. However, $Δ^*(T)$ has two small additional maxima at high temperature, which is a feature of HoBCO single crystals with pronounced twins and indicates the two-phase nature of the sample. Upon annealing, the shape of $Δ^*(T)$ noticeably changes, very likely due to an increase in the magnetic interaction (sample S2). More important is the change in the slope of the data at high temperatures, which has become about 3.5 times steeper. The ordering of the oxygen distribution due to the diffusion process during annealing somewhat compensates for the influence of magnetic interaction. Interestingly, the slope turns out to be the same as for FeAs-based superconductors, suggesting the possibility of the existence of spin density waves in HoBCO in the PG state.
description: 13 pages, 9 figures, 2 table
Strain Distribution in Au/ZnO Microstructures for bio-magnetic sensing utilizing Scanning X-Ray Nano Diffraction and Coherent X-Ray Diffraction Imaging
Creators: name: Jordt, Philipp
Publisher: name: Zenodo
Year: 2023
Subjects: ZnO
Piezotronic
Strain Distribution
Imaging
Coherent X-ray Diffraction Imaging (CXDI)
scanning nano X-ray Diffraction (nXRD)

description: Oral presentation held at DPG SKM conference at 29.03.2023.
Photometric and spectroscopic observations of the 2014 eclipse of the complex binary EE Cephei
Creators: name: Boyd, David
Publisher: name: arXiv
Year: 2014
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We report photometric and spectroscopic observations of the 2014 eclipse of EE Cep. This proved to be one of the shallower eclipses on record rather than one of the deepest as predicted. The general shape of the eclipse light curve was similar to that of the 2003 eclipse. The spectral type before and after eclipse was consistent with B5III and became slightly later at mid-eclipse. Total flux in the Hα emission line remained relatively constant through the eclipse.
description: 7 pages, 4 figures, submitted to the Journal of the British Astronomical Association
On the absence of nova shells
Creators: name: Schmidtobreick, Linda
name: Shara, Michael
name: Tappert, Claus
name: Bayo, Amelia
name: Ederoclite, Alessandro
Publisher: name: arXiv
Year: 2015
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We present our wide field Halpha+N[II] observations of 15 cataclysmic variables to search for remnant nova shells. Such shells have been found around other cataclysmic variables that were hitherto not known as novae. Our candidates were selected as objects in the period regime of high-mass transfer systems that experience - at least occasionally - low mass transfer rates. The fact that we find no indication of a nova shell in any of these systems allows us to set a lower limit of 13000 years to the recurrence time of these objects.
description: 5 pages, 1 figure, accepted by MNRAS
Neutron single particle strengths from the (d,p) reaction on F18
Creators: name: Greife, U.
name: Shapira, D.
name: Livesay, R.J.
name: Smith, M.S.
name: Ma, Z.
name: Blackmon, J.C.
name: Bardayan, D.W.
name: Moazen, B.H.
name: Sahin, L.
name: Kozub, R.L.
name: Batchelder, J.C.
name: Nesaraja, C.D.
name: Brune, C.R.
name: Jewett, C.C.
name: Champagne, A.E.
name: Gross, C.J.
name: Scott, J.P.
name: Cizewski, J.A.
name: Thomas, J.S.
Publisher: name: American Physical Society
Year: 2006

description: The F19 nucleus has been studied extensively. However, there have been no comprehensive experimental studies of F18+n single-particle components in F19, and no measure of neutron vacancies in the F18 ground state, as such experiments require a (radioactive) F18 target or beam. We have used the H2(F18,p)F19 reaction to selectively populate states in F19 that are of F18+n character. The 108.5-MeV radioactive F18+9 beam was provided by the Holifield Radioactive Ion Beam Facility at Oak Ridge National Laboratory. Proton-recoil coincidence data were taken for both α-decaying and particle-stable final states. Angular distributions and spectroscopic factors were measured for nine proton groups, corresponding to 13 states in F19. The results are compared to shell model calculations.
SAIDS: A Novel Approach for Sentiment Analysis Informed of Dialect and Sarcasm
Creators: name: Kaseb, Abdelrahman
name: Farouk, Mona
Publisher: name: arXiv
Year: 2023
Subjects: subject: Computation and Language (cs.CL)
subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: Sentiment analysis becomes an essential part of every social network, as it enables decision-makers to know more about users' opinions in almost all life aspects. Despite its importance, there are multiple issues it encounters like the sentiment of the sarcastic text which is one of the main challenges of sentiment analysis. This paper tackles this challenge by introducing a novel system (SAIDS) that predicts the sentiment, sarcasm and dialect of Arabic tweets. SAIDS uses its prediction of sarcasm and dialect as known information to predict the sentiment. It uses MARBERT as a language model to generate sentence embedding, then passes it to the sarcasm and dialect models, and then the outputs of the three models are concatenated and passed to the sentiment analysis model. Multiple system design setups were experimented with and reported. SAIDS was applied to the ArSarcasm-v2 dataset where it outperforms the state-of-the-art model for the sentiment analysis task. By training all tasks together, SAIDS achieves results of 75.98 FPN, 59.09 F1-score and 71.13 F1-score for sentiment analysis, sarcasm detection, and dialect identification respectively. The system design can be used to enhance the performance of any task which is dependent on other tasks.
Bowling ball representation of virtual string links
Creators: name: Cheng, Zhiyun
Publisher: name: arXiv
Year: 2015
Subjects: subject: Geometric Topology (math.GT)
subject: FOS: Mathematics
subject: 57M25, 57M27

description: In this paper we investigate the virtual string links via a probabilistic interpretation. This representation can be used to distinguish some virtual string links from classical string links. In order to study the algebraic structure behind this probabilistic interpretation we introduce the notion of virtual flat biquandle. The cocycle invariants associated with virtual flat biquandle is discussed.
description: 18 pages, 20 figures
Thermonuclear reaction rate of O17(p,γ)F18
Creators: name: Longland, R.
name: Newton, J.
name: Fitzgerald, R.P.
name: Champagne, A.E.
name: Runkle, R.
name: Fox, C.
name: Iliadis, C.
name: Pollanen, J.
Publisher: name: American Physical Society
Year: 2005

description: The O17(p,γ)F18 and O17(p,α)N14 reactions have a profound influence on hydrogen-burning nucleosynthesis in a number of stellar sites, including red giants, asymptotic giant branch (AGB) stars, massive stars, and classical novae. Previously evaluated thermonuclear rates for both reactions carry large uncertainties. We investigated the proton-capture reaction on O17 in the bombarding energy range of Eplab=180-540keV. We observed a previously undiscovered resonance at ERlab=193.2±0.9keV. The resonance strength amounts to (ωγ)pγ=(1.2±0.2)×10-6eV. With this value, the uncertainties of the O17(p,γ)F18 reaction rates are reduced by orders of magnitude in the peak temperature range of classical novae (T=0.1-0.4GK). We also report on a reevaluation of the O17(p,γ)F18 reaction rates at lower temperatures that are pertinent to red giants, AGB stars, or massive stars. The present work establishes the O17(p,γ)F18 reaction rates over a temperature range of T=0.01-1.5GK with statistical uncertainties of 10-50%. The new recommended reaction rates deviate from the previously accepted values by an order of magnitude around T0.2GK and by factors of 2-3 at T<0.1GK.
Theory of angular dispersive imaging hard x-ray spectrographs
Creators: name: Shvyd'ko, Yuri
Publisher: name: arXiv
Year: 2015
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: A spectrograph is an optical instrument that disperses photons of different energies into distinct directions and space locations, and images photon spectra on a position-sensitive detector. Spectrographs consist of collimating, angular dispersive, and focusing optical elements. Bragg reflecting crystals arranged in an asymmetric scattering geometry are used as the dispersing elements. A ray-transfer matrix technique is applied to propagate x-rays through the optical elements. Several optical designs of hard x-ray spectrographs are proposed and their performance is analyzed. Spectrographs with an energy resolution of 0.1 meV and a spectral window of imaging up to a few tens of meVs are shown to be feasible for inelastic x-ray scattering (IXS) spectroscopy applications. In another example, a spectrograph with a 1-meV spectral resolution and 85-meV spectral window of imaging is considered for Cu K-edge resonant IXS (RIXS).
description: 15 pages, 8 figures, 3 tables (one table with 9 figures)
Some remarks on Relativistic Diffusion and the Spectral Dimension Criterion
Creators: name: Muniz, C. R.
name: Cunha, M. S.
name: Filho, R. N. Costa
name: Bezerra, V. B.
Publisher: name: arXiv
Year: 2014
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Other Condensed Matter (cond-mat.other)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The spectral dimension $d_s$ for high energies is calculated using the Relativistic Schrödinger Equation Analytically Continued (RSEAC) instead of the so-called Telegraph's Equation (TE), in both ultraviolet (UV) and infrared (IR) regimens. Regarding the TE, the recent literature presents difficulties related to its stochastic derivation and interpretation, advocating the use of the RSEAC to properly describe the relativistic diffusion phenomena. Taking into account that the Lorentz symmetry is broken in UV regime at Lifshitz point, we show that there exists a degeneracy in very high energies, meaning that both the RSEAC and the TE correctly describe the diffusion processes at these energy scales, at least under the spectral dimension criterion. In fact, both the equations yield the same result, namely, $d_s = 2$, a dimensional reduction that is compatible with several theories of quantum gravity. This result is reached even when one takes into account a cosmological model - the De Sitter one - for a flat Universe. On the other hand, in the IR regimen, such degeneracy is lifted in favor of the approach via TE, due to the fact that only this equation provides the correct value for $d_s$, which is equal to the actual number of spacetime dimensions, i. e., $d_s = 4$, while RSEAC furnishes $d_s=3$, so that a diffusing particle described by this latter experiences a three-dimensional spacetime.
description: 4 pages, no figures
New constraints on the18F(p,α)15O rate in novae from the (d, p) reaction
Creators: name: Cizewski, J.A.
name: Woods, P.J.
name: Champagne, A.E.
name: Sahin, L.
name: Blackmon, J.C.
name: Thomas, J.S.
name: Kozub, R.L.
name: Jewett, C.C.
name: Ma, Z.
name: Gross, C.J.
name: Smith, M.S.
name: Bardayan, D.W.
name: Brune, C.R.
name: Moazen, B.H.
name: Davinson, T.
name: Greife, U.
name: Batchelder, J.C.
name: Shapira, D.
name: Scott, J.P.
name: Livesay, R.J.
name: Nesaraja, C.D.
Publisher: name: American Physical Society
Year: 2005

description: The degree to which the (p,γ) and (p,α) reactions destroy 18F at temperatures (1-4) × 108 K is important for understanding the synthesis of nuclei in nova explosions and for using the long-lived radionuclide 18F, a target of γ-ray astronomy, as a diagnostic of nova mechanisms. The reactions are dominated by low-lying proton resonances near the I8F+p threshold (Ex = 6.411 MeV in 19Ne). To gain further information about these resonances, we used a radioactive 18F beam from the Holifield Radioactive Ion Beam Facility to selectively populate corresponding mirror states in 19F via the inverse 2H(18F,p)19F neutron transfer reaction. Neutron spectroscopic factors were measured for states in 19F in the excitation energy range 0-9 MeV. Widths for corresponding proton resonances in 19Ne were calculated using a Woods-Saxon potential. The results imply significantly lower I8F(p,γ)19Ne and I8F(p,α)15O reaction rates than reported previously, thereby increasing the prospect of observing the 511 keV annihilation radiation associated with the decay of 18F in the ashes ejected from novae.
Additional file 5 of Candidate biomarkers for treatment benefit from sunitinib in patients with advanced renal cell carcinoma using mass spectrometry-based (phospho)proteomics
Creators: name: van der Wijngaart, Hanneke
name: Beekhof, Robin
name: Knol, Jaco C.
name: Henneman, Alex A.
name: de Goeij-de Haas, Richard
name: Piersma, Sander R.
name: Pham, Thang V.
name: Jimenez, Connie R.
name: Verheul, Henk M. W.
name: Labots, Mariette
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Additional file 5: Figure S5. Bar plots of activated kinase substrates in sensitive versus resistant patients. Activated kinase substrates that were enriched in sensitive patients (not significant), among which some of the known targets of sunitinib. X-axis: each bar represents a single patient (red = primary resistant, blue = sensitive), y-axis: INKA score of the kinase.
Direct measurement of the14N(p, γ)15O S factor
Creators: name: Champagne, A.E.
name: Angulo, C.
name: Runkle, R.C.
name: Pollanen, J.
name: Iliadis, C.
name: Longland, R.
name: Fox, C.
Publisher: name: American Physical Society
Year: 2005

description: The 14(p, γ)15O reaction regulates the rate of energy generation in the stellar CN cycle. Because discrepancies have been found in the analysis and interpretation of previous capture data, we have measured the 14N(p, γ)15O excitation function for energies in the range Eplab = 155-524 keV. Fits of these data using K-matrix theory yield a value for the S factor at zero energy of 1.68 ±0.09(stat) ± 0.16(syst) keVb, which is significantly smaller than the previous result. The corresponding reduction in the stellar reaction rate for 14N(p, γ)15O has a number of interesting consequences, including an impact on estimates for the age of the Galaxy derived from globular clusters.
Patient-specific Finite Element Modeling of Aneurysmal dilatation after chronic type B aortic dissection
Creators: name: Zhang, Shaojie
name: Laubrie, Joan D
name: Mousavi, S. Jamaleddin
name: Avril, Stéphane
name: Ahmed, Sabrina Ben
Publisher: name: arXiv
Year: 2023
Subjects: subject: Medical Physics (physics.med-ph)
subject: FOS: Physical sciences

description: Progressive aneurysmal dilatation is a well-recognized complication in patients with chronic type B aortic dissection (cTBAD), which may lead to a delayed rupture and create a life-threatening condition. However, our understanding of such aortic expansion in cTBAD remains weak. In the present paper, we propose to use numerical simulations to study the role of growth and remodeling (G\&R) in aneurysmal dilatation after cTBAD. We set up a 3D finite-element model of G\&R for aortic dissection within an open-source code. Constitutive equations, momentum balance equations, and equations related to the mechanobiology of the artery were formulated based on the homogenized constrained mixture theory. The model was first applied to idealized aortic geometries with cylindrical and toric shapes to demonstrate its feasibility and efficiency. The model was then applied to a patient-specific aortic segment to show its potential in more relevant and complex patient-specific clinical applications. It was found that the G\&R tends to naturally trigger the aneurysmal dilatation after dissection, in order to restore its tensional equilibrium. Our results indicated that the value of the gain parameter, related to collagen G\&R, plays an important role in the stability of aortic expansion after cTBAD. A small gain parameter will induce an excessive aneurysmal degeneration whilst a large gain parameter helps to recover a stabilized state of the artery after dissection. Finally, it was found that other mechanobiology-related parameters, such as the circumferential length of the dissection, as well as the pressure in the false lumen, may also be determinant for the stability of aneurysmal dilatation after cTBAD. Both a wide tear and an elevated false lumen pressure favor an unstable development of aortic expansion after cTBAD. As future work, the present model will be validated through predictions of aneurysmal dilatation in patient-specific clinical cases, in comparison with datasets followed over a significant period of time.
Bohm's Quantum Potential as an Internal Energy
Creators: name: Dennis, Glen
name: de Gosson, Maurice
name: Hiley, Basil
Publisher: name: arXiv
Year: 2014
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We pursue our discussion of Fermi's surface initiated in Dennis, de Gosson and Hiley and show that Bohm's quantum potential can be viewed as an internal energy of a quantum system. This gives further insight into the role it played by the quantum potential in stationary states. It also allows us to provide a physically motivated derivation of Schrödinger's equation for a particle in an external potential.
description: 10 pages
Investigation of the23Na(p, γ)24Mg and 23Na(p, α)20Ne reactions via (3He,d) spectroscopy
Creators: name: Hansper, V.Y.
name: Iliadis, C.
name: Blackmon, J.C.
name: Powell, D.C.
name: Hale, S.E.
name: Champagne, A.E.
Publisher: name: American Physical Society
Year: 2004

description: States near the 23Na+p threshold in 24Mg were investigated using the 23Na(3He,d)24Mg reaction over the angular range of 5° ≤ θlab ≤ 35° at E(3He)=20 MeV. Spectroscopic factors were extracted for states corresponding to resonances in the 23Na(p, γ) 24Mg and 23Na(p, α)20Ne reactions. We find that one state, corresponding to a previously unobserved resonance at Ec.m.= 138 keV, may make a significant contribution to the rates of both reactions at low temperatures. Another state, corresponding to a possible resonance at Ec.m.=37 keV may make a small contribution to the 23Na(p, α)20Ne reaction. New rates for the 23Na(p, γ)24Mg and 23Na(p, α) 20Ne reactions are presented and the astrophysical implications are discussed.
Additional file 6 of Candidate biomarkers for treatment benefit from sunitinib in patients with advanced renal cell carcinoma using mass spectrometry-based (phospho)proteomics
Creators: name: van der Wijngaart, Hanneke
name: Beekhof, Robin
name: Knol, Jaco C.
name: Henneman, Alex A.
name: de Goeij-de Haas, Richard
name: Piersma, Sander R.
name: Pham, Thang V.
name: Jimenez, Connie R.
name: Verheul, Henk M. W.
name: Labots, Mariette
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Additional file 6: Table S1. Clinicopathological data per individual patient.
Estimating precipitation on early Mars using a radiative-convective model of the atmosphere and comparison with inferred runoff from geomorphology
Creators: name: von Paris, P.
name: Petau, A.
name: Grenfell, J. L.
name: Hauber, E.
name: Breuer, D.
name: Jaumann, R.
name: Rauer, H.
name: Tirsch, D.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: We compare estimates of atmospheric precipitation during the Martian Noachian-Hesperian boundary 3.8 Gyr ago as calculated in a radiative-convective column model of the atmosphere with runoff values estimated from a geomorphological analysis of dendritic valley network discharge rates. In the atmospheric model, we assume CO2-H2O-N2 atmospheres with surface pressures varying from 20 mb to 3 bar with input solar luminosity reduced to 75% the modern value. Results from the valley network analysis are of the order of a few mm d-1 liquid water precipitation (1.5-10.6 mm d-1, with a median of 3.1 mm d-1). Atmospheric model results are much lower, from about 0.001-1 mm d-1 of snowfall (depending on CO2 partial pressure). Hence, the atmospheric model predicts a significantly lower amount of precipitated water than estimated from the geomorphological analysis. Furthermore, global mean surface temperatures are below freezing, i.e. runoff is most likely not directly linked to precipitation. Therefore, our results strongly favor a cold early Mars with episodic snowmelt as a source for runoff. Our approach is challenged by mostly unconstrained parameters, e.g. greenhouse gas abundance, global meteorology (for example, clouds) and planetary parameters such as obliquity- which affect the atmospheric result - as as well as by inherent problems in estimating discharge and runoff on ancient Mars, such as a lack of knowledge on infiltration and evaporation rates and on flooding timescales, which affect the geomorphological data. Nevertheless, our work represents a first step in combining and interpreting quantitative tools applied in early Mars atmospheric and geomorphological studies.
description: accepted in Planetary and Space Science, 37 pages, 14 figures, 2 tables
CoreTrustSeal: Eine Einführung
Creators: name: Recker, Jonas
Publisher: name: Zenodo
Year: 2021
Subjects: CoreTrustSeal

description: Der Vortrag wurde im Rahmen von KonsortSWD gehalten. Er stellt das CoreTrustSeal einführend dar - von den Beweggründen für eine Zertifizierung über einen Überblick zum Siegel und dem Ablauf der Zertifizierung bis hin zum Umgang mit institutionellen Besonderheiten seitens der Antragstellenden.
Explosive hydrogen burning of 17O in classical novae
Creators: name: Newton, J.
name: Champagne, A.E.
name: Longland, R.
name: Iliadis, C.
name: Fox, C.
name: Runkle, R.
name: José, J.
name: Coc, A.
name: Pollanen, J.
Publisher: name: American Physical Society
Year: 2004

description: The explosive burning of 17O, which exhibits resonance at E Rlab = 190 keV in the 17O(p, γ) 18F reaction, was analyzed. The resonance strength was about ωγpγ =(1.2∓0.2)×10-6 eV, which revealed that uncertainities in thermonuclear reaction rates were reduced by orders of magnitude at nova temperatures. The uncertainty in 17O(p, α)18F reaction rates was found to be ≅30%. The results show that resonance in thermonuclear reaction reduced uncertainty in galactic synthesis of 17O, the stellar production of 18F, and oxygen isotopic ratios in nova ejecta.
Non-linear quantum noise effects in scale invariant junctions
Creators: name: Mintchev, Mihail
name: Santoni, Luca
name: Sorba, Paul
Publisher: name: arXiv
Year: 2015
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: We study non-equilibrium steady state transport in scale invariant quantum junctions with focus on the particle and heat fluctuations captured by the two-point current correlation functions. We show that the non-linear behavior of the particle current affects both the particle and heat noise. The existence of domains of enhancement and reduction of the noise power with respect to the linear regime are observed. The impact of the statistics is explored. We demonstrate that in the scale invariant case the bosonic particle noise exceeds the fermionic one in the common domain of heat bath parameters. Multi-lead configurations are also investigated and the effect of probe terminals on the noise is discussed.
description: LaTex, 1+20 pages, 10 figures
Promoting Artificial Intelligence and Data Literacy within Teacher Education
Creators: name: Valentina Dagienė
name: Martin Kandlhofer
name: Vaida Masiulionytė-Dagienė
name: Viktoriya Olari
name: Ralf Romeike
Publisher: name: Zenodo
Year: 2023

description: Promoting Artificial Intelligence and Data Literacy within Teacher Education
Summary of Long-Baseline Systematics Session at CETUP*2014
Creators: name: Cherdack, D.
name: Worcester, E.
Publisher: name: arXiv
Year: 2015
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: A session studying systematics in long-baseline neutrino oscillation physics was held July 14-18, 2014 as part of CETUP* 2014. Systematic effects from flux normalization and modeling, modeling of cross sections and nuclear interactions, and far detector effects were addressed. Experts presented the capabilities of existing and planned tools. A program of study to determine estimates of and requirements for the size of these effects was designed. This document summarizes the results of the CETUP* systematics workshop and the current status of systematic uncertainty studies in long-baseline neutrino oscillation measurements.
description: Proceedings of the CETUP* Workshop 2014
Quantum hashing. Group approach
Creators: name: Ziatdinov, Mansur
Publisher: name: arXiv
Year: 2014
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: In this paper we consider a generalization of quantum hash functions for arbitrary groups. We show that quantum hash function exists for arbitrary abelian group. We construct a set of "good" automorphisms --- a key component of quantum hash funciton. We prove some restrictions on Hilbert space dimension and group used in quantum hash function
description: Draft of the article that is sent to Lobachevskii Journal of Mathematics
"No, to the Right" -- Online Language Corrections for Robotic Manipulation via Shared Autonomy
Creators: name: Cui, Yuchen
name: Karamcheti, Siddharth
name: Palleti, Raj
name: Shivakumar, Nidhya
name: Liang, Percy
name: Sadigh, Dorsa
Publisher: name: arXiv
Year: 2023
Subjects: subject: Robotics (cs.RO)
subject: Artificial Intelligence (cs.AI)
subject: Computation and Language (cs.CL)
subject: Human-Computer Interaction (cs.HC)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: Systems for language-guided human-robot interaction must satisfy two key desiderata for broad adoption: adaptivity and learning efficiency. Unfortunately, existing instruction-following agents cannot adapt, lacking the ability to incorporate online natural language supervision, and even if they could, require hundreds of demonstrations to learn even simple policies. In this work, we address these problems by presenting Language-Informed Latent Actions with Corrections (LILAC), a framework for incorporating and adapting to natural language corrections - "to the right," or "no, towards the book" - online, during execution. We explore rich manipulation domains within a shared autonomy paradigm. Instead of discrete turn-taking between a human and robot, LILAC splits agency between the human and robot: language is an input to a learned model that produces a meaningful, low-dimensional control space that the human can use to guide the robot. Each real-time correction refines the human's control space, enabling precise, extended behaviors - with the added benefit of requiring only a handful of demonstrations to learn. We evaluate our approach via a user study where users work with a Franka Emika Panda manipulator to complete complex manipulation tasks. Compared to existing learned baselines covering both open-loop instruction following and single-turn shared autonomy, we show that our corrections-aware approach obtains higher task completion rates, and is subjectively preferred by users because of its reliability, precision, and ease of use.
description: Accepted to the 18th ACM/IEEE International Conference on Human Robot Interaction (HRI), Marc 2023. First two authors contributed equally. 9 Pages, 7 Figures
General relativistic effects and the near-infrared and X-ray variability of Sgr A* I
Creators: name: von Fellenberg, Sebastiano D.
name: Witzel, Gunther
name: Bauböck, Michi
name: Chung, Hui-Hsuan
name: Aimar, Nicolás
name: Bordoni, Matteo
name: Drescher, Antonia
name: Eisenhauer, Frank
name: Genzel, Reinhard
name: Gillessen, Stefan
name: Marchili, Nicola
name: Paumard, Thibaut
name: Perrin, Guy
name: Ott, Thomas
name: Ribeiro, Diogo
name: Ros, Eduardo
name: Vincent, Frédéric
name: Widmann, Felix
name: Willner, S. P.
name: Zensus, J. Anton
Publisher: name: arXiv
Year: 2023
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: The near-infrared (NIR) and X-ray emission of Sagittarius A* shows occasional bright flares that are assumed to originate from the innermost region of the accretion flow. We identified $25$ $4.5 μm$ and $24$ X-ray flares in archival data obtained with the \textit{Spitzer} and \textit{Chandra} observatories. With the help of general relativistic ray-tracing code, we modeled trajectories of ``hot spots'' and studied the light curves of the flares for signs of the effects of general relativity. Despite their apparent diversity in shape, all flares share a common, exponential impulse response, a characteristic shape that is the building block of the variability. This shape is symmetric, that is, the rise and fall times are the same. Furthermore, the impulse responses in the NIR and X-ray are identical within uncertainties, with an exponential time constant $τ\sim 15$ minute. The observed characteristic flare shape is inconsistent with hot-spot orbits viewed edge-on. Individually modeling the light curves of the flares, we derived constraints on the inclination of the orbital plane of the hot spots with respect to the observer ($i \sim 30^{\circ} , < 75^{\circ} $) and on the characteristic timescale of the intrinsic variability (tens of minutes).
Additional file 9 of Candidate biomarkers for treatment benefit from sunitinib in patients with advanced renal cell carcinoma using mass spectrometry-based (phospho)proteomics
Creators: name: van der Wijngaart, Hanneke
name: Beekhof, Robin
name: Knol, Jaco C.
name: Henneman, Alex A.
name: de Goeij-de Haas, Richard
name: Piersma, Sander R.
name: Pham, Thang V.
name: Jimenez, Connie R.
name: Verheul, Henk M. W.
name: Labots, Mariette
Publisher: name: figshare
Year: 2024
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Cancer
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Additional file 9: Table S4. Role of proteins corresponding to candidate phosphosite signature (n = 78) in RCC.
title: Digital Game-Based Approach to Math Learning for Students
Creators: name: Ayaz, Gul
name: Smith, Katherine
Publisher: name: Old Dominion University Libraries
Year: 2023

description: Mathematics is an important subject that is pervasive across many disciplines. It is also a subject that has proven to be challenging to both teach and learn. Students face many challenges with learning math such as a lack of motivation and anxiety. To address these challenges, game-based learning has become a popular approach to stimulate students and create a more positive classroom environment. It can serve as an alternative or supplement to traditional teaching and can better engage students while developing a positive attitude toward learning. The use of games in a classroom can create a more exciting and engaging environment, while still reinforcing learning concepts. This paper explores the development of three math games to supplement classroom learning and analyses the game mechanics and designs implemented in each game.
Joint inversion of muon tomography and gravimetry - a resolving kernel approach
Creators: name: Jourde, Kevin
name: Gibert, Dominique
name: Marteau, Jacques
Publisher: name: arXiv
Year: 2014
Subjects: subject: Geophysics (physics.geo-ph)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Both muon tomography and gravimetry are geophysical methods that provide information on the density structure of the Earth's subsurface. Muon tomography measures the natural flux of cosmic muons and its attenuation produced by the screening effect of the rock mass to image. Gravimetry generally consists in measurements of the vertical component of the local gravity field. Both methods are linearly linked to density, but their spatial sensitivity is very different. Muon tomography essentially works like medical X-ray scan and integrates density information along elongated narrow conical volumes while gravimetry measurements are linked to density by a 3-dimensional integral encompassing the whole studied domain. We develop the mathematical expressions of these integration formulas -- called acquisition kernels -- to express resolving kernels that act as spatial filters relating the true unknown density structure to the density distribution actually recoverable from the available data. The resolving kernels provide a tool to quantitatively describe the resolution of the density models and to evaluate the resolution improvement expected by adding new data in the inversion. The resolving kernels derived in the joined muon/gravimetry case indicate that gravity data are almost useless to constrain the density structure in regions sampled by more than two muon tomography acquisitions. Interestingly the resolution in deeper regions not sampled by muon tomography is significantly improved by joining the two techniques. Examples taken from field experiments performed on La Soufrière of Guadeloupe volcano are discussed.
description: Submitted to Geoscientific Model Development
14N(3He,d)15O as a probe of direct capture in the 14N(p,γ)15O reaction
Creators: name: Iliadis, C.
name: Hansper, V.Y.
name: Hale, S.E.
name: Boswell, M.
name: Champagne, A.E.
name: Powell, D.C.
name: Bertone, P.F.
Publisher: name: American Physical Society
Year: 2002

description: Spectroscopic factors and asymptotic normalization coefficients (ANCs) have been determined for bound states in 15O using the 14N(3He,d)15O reaction. These results are used to calculate the astrophysical S factor for direct capture in the 14N(p, γ)13O reaction. We also discuss how uncertainties in optical-model parameters influence both the spectroscopic factors and the ANCs, and the effect that this has on the predicted direct-capture reaction rate.
Search for a resonance in the 14N(p, γ)15O reaction at Ep = 127 keV
Creators: name: Pollanen, J.
name: Stephan, A.
name: Westerfeldt, C.
name: Runkle, R.C.
name: Iliadis, C.
name: Champagne, A.E.
name: Fox, C.
Publisher: name: American Physical Society
Year: 2002

description: The 14N(p, γ)15O reaction regulates the energy produced by the CN cycle in main-sequence stars and in red giants. Recently, preliminary evidence was presented for a new resonance in this reaction, which would significantly increase the reaction rate for temperatures near 108 K. We have attempted to confirm this result and find no indication of a resonance near Eplab = 127 keV. Our upper limit on its strength is ω γ≤32 neV (95% C.L.), which is more than 2 orders of magnitude below the previously reported value.
Adaptive multiresolution computations applied to detonations
Creators: name: Roussel, Olivier
name: Schneider, Kai
Publisher: name: arXiv
Year: 2015
Subjects: subject: Computational Physics (physics.comp-ph)
subject: Numerical Analysis (math.NA)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: A space-time adaptive method is presented for the reactive Euler equations describing chemically reacting gas flow where a two species model is used for the chemistry. The governing equations are discretized with a finite volume method and dynamic space adaptivity is introduced using multiresolution analysis. A time splitting method of Strang is applied to be able to consider stiff problems while keeping the method explicit. For time adaptivity an improved Runge--Kutta--Fehlberg scheme is used. Applications deal with detonation problems in one and two space dimensions. A comparison of the adaptive scheme with reference computations on a regular grid allow to assess the accuracy and the computational efficiency, in terms of CPU time and memory requirements.
description: Zeitschrift f\"ur Physicalische Chemie, accepted
Forbidden emission lines in protostellar outflows and jets with MUSE
Creators: name: Flores-Rivera, Lizxandra
name: Flock, Mario
name: Kurtovic, Nicolás
name: Husemann, Bernd
name: Banzatti, Andrea
name: Ringqvist, Simon C.
name: Kamann, Sebastian
name: Müller, André
name: Fendt, Christian
name: Lopez, Rebeca Garcia
name: Marleau, Gabriel-Dominique
name: Henning, Thomas
name: Carrasco-Gonzalez, Carlos
name: van Boekel, Roy
name: Keppler, Miriam
name: Launhardt, Ralf
name: Aoyama, Yuhiko
Publisher: name: arXiv
Year: 2023
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Forbidden emission lines in protoplanetary disks are a key diagnostic in studies of the evolution of the disk and the host star. We report spatially resolved emission lines, [OI] 6300, 6363, [NII] 6548, 6583, H$α$, and [SII] 6716, 6730 Angstrom that are believed to be associated with jets and magnetically driven winds in the inner disks. Observations were carried out with the optical integral field spectrograph of the Multi Unit Spectroscopic Explorer (MUSE), at the Very Large Telescope (VLT). With a resolution of 0.025 X 0.025 arcsec$^{2}$, we aim to derive the position angle of the outflow/jet (PA$_{outflow/jet}$) that is connected with the inner disk. The forbidden emission lines analyzed here have their origin at the inner parts of the protoplanetary disk. From the maximum intensity emission along the outflow/jet in DL Tau, CI Tau, DS Tau, IP Tau, and IM Lup, we were able to reliably measure the PA$_{outflow/jet}$ for most of the identified lines. We found that our estimates agree with PA$_{dust}$ for most of the disks. These estimates depend on the signal-to-noise level and the collimation of the outflow (jet). The outflows/jets in CIDA 9, GO Tau, and GW Lup are too compact for a PA$_{outflow/jet}$ to be estimated. Based on our kinematics analysis, we confirm that DL Tau and CI Tau host a strong outflow/jet with line-of-sight velocities much greater than 100 km s$^{-1}$, whereas DS Tau, IP Tau, and IM Lup velocities are lower and their structures encompass low-velocity components to be more associated with winds. Our estimates for the mass-loss rate, $\dot{M}_{loss}$, range between (1.1-6.5)X10$^{-7}$-10$^{-8}$ $M_{\odot}$ yr$^{-1}$ for the disk-outflow/jet systems analyzed here. The outflow/jet systems analyzed here are aligned within around 1 degree between the inner and outer disk. Further observations are needed to confirm a potential misalignment in IM Lup.
description: Accepted on December 19 2022
Additional file 1 of Testing spasticity mechanisms in chronic stroke before and after intervention with contralesional motor cortex 1 Hz rTMS and physiotherapy
Creators: name: Mahmoud, Wala
name: Hultborn, Hans
name: Zuluaga, Jagoba
name: Zrenner, Christoph
name: Zrenner, Brigitte
name: Ziemann, Ulf
name: Ramos-Murguialday, Ander
Publisher: name: figshare
Year: 2024
Subjects: subject: Biophysics
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Pharmacology

description: Additional file 1. Patient subgroup analyses.
Psychological Impact of the COVID-19 Pandemic on Long-Term Care Staff Using a Social Ecological Framework: A Scoping Review
Creators: name: Plys, Evan
name: Wei, Andrea
name: Ahmad, Nina
name: Bell, Jessica
name: Locke, Jenna
name: Johnson-Koenke, Rachel
name: Vranceanu, Ana-Maria
name: Lopez, Ruth
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Social and Behavioral Sciences
subject: covid-19
subject: nursing home staff
subject: scoping review

description: The purpose of this review is to map the research targeting psychological stress, coping, and wellness among long-term care (LTC) staff throughout the COVID-19 pandemic onto a social ecology (SE) model with the goals of: (1) identifying areas in need of more research, and (2) consolidating evidence that can guide multi-level interventions. A SE framework was chosen because of the various organizational and societal stressors that likely impact LTC staff psychological experiences and wellness (Chamberlain et al., 2017; Cohen-Mansfield, 1995). Further, for populations experiencing disparities, such as LTC staff (PHI, 2019), multi-level interventions are recommended (Castillo & Harris, 2021). Ultimately, findings may be used to inform intervention designed to address psychological wellness among LTC, an important component of healing and growing from the COVID-19 pandemic. We are unaware of a previous review that applies this framework to review studies related to the psychological experience of LTC staff at multiple SE levels.