cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Table S4 from The assembly of ant-farmed gardens: mutualism specialization via host broadening
Creators: name: Chomicki, Guillaume
name: Janda, Milan
name: Renner, Susanne S.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences

description: Ant-gardens (AGs) are ant/plant mutualisms in which ants farm epiphytes in return for nest space and food rewards. They occur in the Neotropics and Australasia, but not in Africa, and their evolutionary assembly remains unclear. We here use phylogenetic frameworks for important AG lineages in Australasia, namely the ant genus Philidris and domatium-bearing ferns (Lecanopteris) and flowering plants in the Apocynaceae (Hoya and Dischidia) and Rubiaceae (Myrmecodia, Hydnophytum, Anthorrhiza, Myrmephytum and Squamellaria) to trace AG assembly in time and space. Our analyses revealed that in these clades, diaspore dispersal by ants evolved at least 13 times, five times in the Late Miocene and Pliocene in Australasia and seven times during the Pliocene in Southeast Asia, after Philidris ants had arrived there, with subsequent dispersal between these two areas. A uniquely specialized AG system evolved in Fiji at the onset of the Quaternary. The farming of other epiphytes that do not offer nest spaces in the same AGs suggests that a broadening of the ants' plant host spectrum drove the evolution of additional domatium-bearing AG-epiphytes by selecting on pre-adapted morphological traits. Consistent with this, we found a statistical correlation between the evolution of diaspore dispersal by ants and domatia in all three lineages. Our study highlights how host broadening by a symbiont has led to new farming mutualisms.
Reason for normalization from Variation in wall shear stress in channel networks of zebrafish models
Creators: name: Woorak Choi
name: Kim, Hye Mi
name: Sungho Park
name: Eunseop Yeom
name: Junsang Doh
name: Lee, Sang Joon
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Biological Engineering
subject: 110601 Biomechanics
subject: FOS: Health sciences

description: Normalization to express flow rate and resistance
CFL thickness measurement techniques from Variation in wall shear stress in channel networks of zebrafish models
Creators: name: Woorak Choi
name: Kim, Hye Mi
name: Sungho Park
name: Eunseop Yeom
name: Junsang Doh
name: Lee, Sang Joon
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Biological Engineering
subject: 110601 Biomechanics
subject: FOS: Health sciences

description: Measurement techniques for cell free layer thickness
Sequences
Creators: name: Cavallaro, Anneliese
name: Corbett, Brooklyn
name: Tangen, Jason M
name: Raymond, Jennifer
name: Robson, Samuel G.
name: McCarthy, Duncan
name: Linzi Wilson-Wilde
name: Eva, Kevin
name: Edmond, Gary
name: Thompson, Matthew B
name: Osborn, Scott
name: Byard, Graham
name: Hayes, Robert
name: Searston, Rachel A.
Publisher: name: OSF Registries
Year: 2018

description: This component contains the full set of 64 pre-generated participant sequences as unique .txt files that are read into the experiment software: FingerprintNomination-Exp01-SequencePresentationScript-RASearston.livecode. The "randomised" sequences are the 64 sequences as to be presented to participants in the experiment. The "sorted" sequences are the exact same set of 64 sequences, but sorted by hand and finger type. Also included is the LiveCode source file (community edition version 9.0.2) for generating the sequences.
Biomarkers of disease progression in multiple sclerosis: towards measuring the forest behind the tree
Creators: name: Bridel, Claire
Publisher: name: Université de Genève
Year: 2023
Subjects: info:eu-repo/classification/ddc/616.8

description:
Neuroimmunology is the discipline that specializes in the care of people with multiple sclerosis (PwMS) and related diseases. It is one of the most dynamic fields of clinical neurology, with means to treat PwMS increasing steadily since the early 1990’s. In MS, neurological disability accumulation is driven by two clinically distinct processes: relapses and progression. Relapses are defined as episodes of acute or subacute focal neurological deficits followed by varying degrees of recover. They are the most conspicuous initial clinical manifestations of MS in most patients, but their frequency decreases with time, becoming sparse after 10 to 15 years of disease evolution. Progression is defined as slow neurological disability accumulation occurring independently of relapses and MRI signs of acute focal inflammatory disease activity. It is an insidious process that is difficult to identify clinically, especially early in the disease course, as it may be masked by relapses. Its rate increases with time, becoming the major process driving disability accumulation later in the disease course in a majority of PwMS. All currently available disease modifying therapies (DMTs) are modulators of the peripheral immune system, targeting relapses and acute focal inflammatory disease activity with varying degrees of efficacy. Treatments specifically targeting progression are lacking, although this process contributes overwhelmingly to long-term physical and cognitive disability. Evaluating new drugs to reduce progression rate requires robust tools to quantify this process over the relatively short time frame of clinical trials. Such tools are lacking, but there are promising candidates. The absence of drugs to significantly slow progression and its devastating effect on the life of PwMS is a reality I witness daily in clinical practice. In the last years, I have thus focused my research on identifying and evaluating candidate body fluid biomarkers of progression, as well as on developing tools to measure these biomarkers. It is a challenging endeavor because the physiopathological underpinnings of progression are poorly understood and likely manifold. Several biomarkers will probably be needed to capture this complexity. In this thesis, I start by giving an overview of clinical, immunological, and pathological aspects of MS. I then give an overview of the state of knowledge of one of the most promising body fluid candidate biomarker of progression, as a background to the published manuscripts I selected for the body of this thesis. Finally, I discuss the challenges ahead, provide an overview of a research project I am currently working on thanks to the support of the Fondation privée des Hôpitaux Universitaires de Genève and the Fondation Schmidheiny, and present a new project I would like to start shortly in collaboration with the laboratory of Professor Jean-Charles Sanchez
Additional file 2: of InsP3R-SEC5 interaction on phagosomes modulates innate immunity to Candida albicans by promoting cytosolic Ca2+ elevation and TBK1 activity
Creators: name: Yang, Long
name: Gu, Wenwen
name: Cheung, King-Ho
name: Yan, Lan
name: Tong, Benjamin
name: Jiang, Yuanying
name: Yang, Jun
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Figure S1. Results of the yeast two-hybrid screen. (A) The sequence of the bait. (B) Sequence alignment of the two positive clones (49.JUN.32 and 47.JUN.30) and SEC5. (DOCX 5416Â kb)
Bauforschung untertage
Creators: name: Numberger, Markus
Publisher: name: Denkmalpflege in Baden-Württemberg – Nachrichtenblatt der Landesdenkmalpflege
Year: 2024

description: Denkmalpflege in Baden-Württemberg – Nachrichtenblatt der Landesdenkmalpflege, Bd. 53 Nr. 1 (2024)
Table S3 from The assembly of ant-farmed gardens: mutualism specialization via host broadening
Creators: name: Chomicki, Guillaume
name: Janda, Milan
name: Renner, Susanne S.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences

description: Ant-gardens (AGs) are ant/plant mutualisms in which ants farm epiphytes in return for nest space and food rewards. They occur in the Neotropics and Australasia, but not in Africa, and their evolutionary assembly remains unclear. We here use phylogenetic frameworks for important AG lineages in Australasia, namely the ant genus Philidris and domatium-bearing ferns (Lecanopteris) and flowering plants in the Apocynaceae (Hoya and Dischidia) and Rubiaceae (Myrmecodia, Hydnophytum, Anthorrhiza, Myrmephytum and Squamellaria) to trace AG assembly in time and space. Our analyses revealed that in these clades, diaspore dispersal by ants evolved at least 13 times, five times in the Late Miocene and Pliocene in Australasia and seven times during the Pliocene in Southeast Asia, after Philidris ants had arrived there, with subsequent dispersal between these two areas. A uniquely specialized AG system evolved in Fiji at the onset of the Quaternary. The farming of other epiphytes that do not offer nest spaces in the same AGs suggests that a broadening of the ants' plant host spectrum drove the evolution of additional domatium-bearing AG-epiphytes by selecting on pre-adapted morphological traits. Consistent with this, we found a statistical correlation between the evolution of diaspore dispersal by ants and domatia in all three lineages. Our study highlights how host broadening by a symbiont has led to new farming mutualisms.
Advanced Training on Perfused Specimen for Cardiovascular Surgeons: A new paradigm in surgery teaching
Creators: name: Murith, Nicolas Paul Henri
Publisher: name: Université de Genève
Year: 2023
Subjects: info:eu-repo/classification/ddc/617

description:
La formation des futures générations de chirurgiens est au cœur des préoccupations d’un enseignant. Dès lors qu'il existe des méthodes originales à même de lui permettre de transmettre son savoir et de susciter ainsi la passion de son métier à ses jeunes collègues, son engagement dans cette voie d'un enseignement novateur est incontournable. Au fil des années, les outils classiques à disposition (textbooks, précis d'anatomie, planches illustrées) ont progressivement fait place à de nouveaux systèmes d’enseignement, dominés par l'explosion de nouvelles technologies, en particulier dans le domaine informatique.

Cependant, malgré l’utilité indiscutable des simulateurs, ces derniers peinent à entrainer de manière réaliste la dernière étape, cruciale : l’entraînement pratique qui fait la différence entre un médecin correctement instruit et un chirurgien habile et performant.

Chargé d’enseignement et responsable de l’unité de chirurgie vasculaire au sein du service de chirurgie cardiovasculaire, j’ai développé en sus de mon activité opératoire, un réel intérêt pour l’enseignement, convaincu que la chirurgie reste fondée sur l’apprentissage par l’exemple, à la manière d’un compagnonnage. Fort de ces constatations, c’est tout naturellement que je me suis fixé pour but de transmettre mon expérience à mes jeunes collègues. Or, il est aujourd’hui difficile de leur permettre rapidement les gestes hautement techniques dans un souci de respect du patient et des considérations éthiques : l’époque du « See one, Do one, Teach one » est révolue.

Engagé dans l’enseignement au sein de la Swiss Foundation for Innovation and Training in Surgery, j’ai voulu développer un programme avancé dédié à l’enseignement de la chirurgie cardiovasculaire : un cours sur corps perfusé, permettant d’effectuer ainsi de manière réaliste les interventions courantes de ma discipline.
Additional file 3: of InsP3R-SEC5 interaction on phagosomes modulates innate immunity to Candida albicans by promoting cytosolic Ca2+ elevation and TBK1 activity
Creators: name: Yang, Long
name: Gu, Wenwen
name: Cheung, King-Ho
name: Yan, Lan
name: Tong, Benjamin
name: Jiang, Yuanying
name: Yang, Jun
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Figure S2. GST-H1 pulls down purified His-tagged SEC5-2 and SEC5-4 fragments. (A) Coomassie blue-stained gel showing the purity of His-tagged SEC5-2 and SEC5-4. (B) Immunoblots of in vitro pull-down assays using GST-InsP3R-H1 and purified His-tagged SEC5-2. (C) Immunoblots of in vitro pull-down assays using GST-InsP3R-H1 and purified His-tagged SEC5-4. (DOCX 1448Â kb)
Citizen Science am Dreiländereck
Creators: name: Wagner, Heiko
name: Haasis-Berner, Andreas
name: Jenisch, Bertram
name: Lange, Moritz
Publisher: name: Denkmalpflege in Baden-Württemberg – Nachrichtenblatt der Landesdenkmalpflege
Year: 2024

description: Denkmalpflege in Baden-Württemberg – Nachrichtenblatt der Landesdenkmalpflege, Bd. 53 Nr. 1 (2024)
Additional file 4: of InsP3R-SEC5 interaction on phagosomes modulates innate immunity to Candida albicans by promoting cytosolic Ca2+ elevation and TBK1 activity
Creators: name: Yang, Long
name: Gu, Wenwen
name: Cheung, King-Ho
name: Yan, Lan
name: Tong, Benjamin
name: Jiang, Yuanying
name: Yang, Jun
Publisher: name: figshare
Year: 2018
Subjects: Biochemistry
Medicine
Cell Biology
Molecular Biology
Neuroscience
Pharmacology
Chemical Sciences not elsewhere classified

description: Figure S3. InsP3R inhibitor araguspongin B (ARB) inhibits the carbachol-induced Ca2+ elevation. (A) Representative Ca2+ traces depicting carbachol-induced ER Ca2+ release (black bar) under the influence of ARB; experiments were performed similarly to those described in Fig. 3a and b with cells pretreated with 2 μM ARB or dimethyl sulfoxide (DMSO) for 2 h. (B) Quantification of Ca2+ peak amplitude; data are summarized as the mean ± standard error of the mean (SEM) from three experiments with at least 100 cells (**p < 0.005, ***p < 0.001). (DOCX 239 kb)
Migration? Pandemie? Klimawandel? Südwestdeutschland im 1. Jahrhundert v. Chr.
Creators: name: Marinova, Elena
name: Rieckhoff, Sabine
name: Rösch, Manfred
name: Wieland, Günther
Publisher: name: Denkmalpflege in Baden-Württemberg – Nachrichtenblatt der Landesdenkmalpflege
Year: 2024

description: Denkmalpflege in Baden-Württemberg – Nachrichtenblatt der Landesdenkmalpflege, Bd. 53 Nr. 1 (2024)
Additional file 5: of InsP3R-SEC5 interaction on phagosomes modulates innate immunity to Candida albicans by promoting cytosolic Ca2+ elevation and TBK1 activity
Creators: name: Yang, Long
name: Gu, Wenwen
name: Cheung, King-Ho
name: Yan, Lan
name: Tong, Benjamin
name: Jiang, Yuanying
name: Yang, Jun
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology

description: Figure S4. Sequence alignment of the InsP3R-H1 region from three types of InsP3Rs, H1-TAT, and H1-scrambled TAT control peptide. (DOCX 1262Â kb)
Additional file 6: of InsP3R-SEC5 interaction on phagosomes modulates innate immunity to Candida albicans by promoting cytosolic Ca2+ elevation and TBK1 activity
Creators: name: Yang, Long
name: Gu, Wenwen
name: Cheung, King-Ho
name: Yan, Lan
name: Tong, Benjamin
name: Jiang, Yuanying
name: Yang, Jun
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology

description: Figure S5. Confocal images depicting the relocalization of SEC5 and InsP3R in RAW264.7 cells. Representative resting (upper panel) or activated (C. albicans-infected; lower panel) RAW264.7 cells were immunostained with anti-SEC5 (red) and anti-InsP3R3 antibodies (green). (DOCX 335Â kb)
Additional file 8: of InsP3R-SEC5 interaction on phagosomes modulates innate immunity to Candida albicans by promoting cytosolic Ca2+ elevation and TBK1 activity
Creators: name: Yang, Long
name: Gu, Wenwen
name: Cheung, King-Ho
name: Yan, Lan
name: Tong, Benjamin
name: Jiang, Yuanying
name: Yang, Jun
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology

description: Figure S6. Confocal images depicting the localization of TBK1 and InsP3R in BMDM cells. (A) Confocal images depicting the co-localization of TBK1 (red) and InsP3R (green) in resting BMDMs (Pearson coefficient = 0.75). (B) XYZ images of BMDMs stimulated with C. albicans and stained for InsP3R (red) and TBK1 (green). White arrows indicate the phagosome. InsP3R and TBK1 are circular bands around C. albican that is being ingested. (DOCX 470Â kb)
Der Lenninger Wappenstein
Creators: name: Cheng, Yongyan
name: Seitz, Paul Johann
Publisher: name: Denkmalpflege in Baden-Württemberg – Nachrichtenblatt der Landesdenkmalpflege
Year: 2024

description: Denkmalpflege in Baden-Württemberg – Nachrichtenblatt der Landesdenkmalpflege, Bd. 53 Nr. 1 (2024)
Optimal investment and operations of concentrating solar power plants under new market trends
Creators: name: Keyif, Enes
name: Hornung, Michael
name: Zhu, Wanshan
Publisher: name: Zenodo
Year: 2020
Subjects: Concentrating solar power
Optimal investment and operations
Payment Scheme
Hybrid Energy Systems
Thermal Energy Storage

description: This upload consist the related data and the source code of the manuscript named "Optimal investment and operations of concentrating solar power plants under new market trends". The files can be opened and tested with IBM ILOG CPLEX Optimization Studio. There are 3 files in this upload which are described as follows: CSP+Wind+Heater.dat : Data file, regarding parameters, assumptions and datasets CSP+Wind+Heater.mod : Model file, regarding optimization model with OPL language CSP+Wind+Heater.ops : Optimization settings file
description: {"references": ["National Renewable Energy Laboratory .Golden,CO., System advisor model (SAM) . URL https://sam.nrel.gov/content/downloads"]}
Additional file 9: of InsP3R-SEC5 interaction on phagosomes modulates innate immunity to Candida albicans by promoting cytosolic Ca2+ elevation and TBK1 activity
Creators: name: Yang, Long
name: Gu, Wenwen
name: Cheung, King-Ho
name: Yan, Lan
name: Tong, Benjamin
name: Jiang, Yuanying
name: Yang, Jun
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology

description: Figure S7. Both the binding of SEC5 with InsP3R-TM6+C and the enzymatic activity of TBK1 are independent of Ca2+. (A) Representative western blot depicting GST pull-downs of SEC5 from mouse brain lysates with different concentrations of Ca2+. Coomassie blue-stained gel shows the input of GST-tagged InsP3R-TM6+C fragments (lower panel). (B) Immunoblots depicting the phosphorylation of recombinant IRF-3-C in the presence of Ca2+. (DOCX 4817Â kb)
Figure S1 from A phylogenetic perspective on the association between ants (Hymenoptera: Formicidae) and black yeasts (Ascomycota: Chaetothyriales)
Creators: name: Vasse, Marie
name: Voglmayr, Hermann
name: Mayer, Veronika
name: Gueidan, Cécile
name: Nepel, Maximilian
name: Moreno, Leandro
name: Hoog, Sybren De
name: Marc-André Selosse
name: McKey, Doyle
name: Rumsaïs Blatrix
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Molecular Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology

description: Distribution of pairwise similarity at ITS for 38 strains of ant-associated Cyphellophoraceae, showing a drop of values at 0.99 but not at 0.97.
Auf der Suche nach jungen Gartendenkmalen
Creators: name: Buschmeier, Andreas
Publisher: name: Denkmalpflege in Baden-Württemberg – Nachrichtenblatt der Landesdenkmalpflege
Year: 2024

description: Denkmalpflege in Baden-Württemberg – Nachrichtenblatt der Landesdenkmalpflege, Bd. 53 Nr. 1 (2024)
Additional File 10:
Creators: name: Wu, Xianglong
name: Jia, Renyong
name: Zhou, Jiakun
name: Wang, Mingshu
name: Chen, Shun
name: Liu, Mafeng
name: Zhu, Dekang
name: Zhao, Xinxin
name: Sun, Kunfeng
name: Yang, Qiao
name: Wu, Ying
name: Yin, Zhongqiong
name: Chen, Xiaoyue
name: Wang, Jue
name: Cheng, Anchun
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Plant Biology
subject: Computational Biology

description: Figure S3. Regulatory network of DEF miRNAs and CHv genes. a Gene regulatory network formed by differentially-expressed DEF miRNAs (blue ellipses) and their target genes (yellow rectangles). b Gene regulatory network of differentially-expressed DEF miRNAs (blue circles) and target immediate-early (IE) genes (yellow rectangles). (PDF 353 kb)
Ward & Branstetter ESM tables from The acacia ants revisited: convergent evolution and biogeographic context in an iconic ant/plant mutualism
Creators: name: Ward, Philip S.
name: Branstetter, Michael G.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 60301 Animal Systematics and Taxonomy
subject: 60310 Plant Systematics and Taxonomy

description: Electronic supplementary material, tables S1-S6
Additional file 1 of Mobile population dynamics and malaria vulnerability: a modelling study in the China-Myanmar border region of Yunnan Province, China
Creators: name: Chen, Tian-Mu
name: Zhang, Shao-Sen
name: Feng, Jun
name: Xia, Zhi-Gui
name: Luo, Chun-Hai
name: Zeng, Xu-Can
name: Guo, Xiang-Rui
name: Lin, Zu-Rui
name: Zhou, Hong-Ning
name: Zhou, Shui-Sen
Publisher: name: figshare
Year: 2018
Subjects: Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Developmental Biology
Computational Biology

description: Registration Form for Village Profile in Yingjiang County. (DOCX 27Â kb)
Derivation of equation for resistance from Variation in wall shear stress in channel networks of zebrafish models
Creators: name: Woorak Choi
name: Kim, Hye Mi
name: Sungho Park
name: Eunseop Yeom
name: Junsang Doh
name: Lee, Sang Joon
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Biological Engineering
subject: 110601 Biomechanics
subject: FOS: Health sciences

description: Derivation of equation for resistance of blood vessel
Additional file 2 of Mobile population dynamics and malaria vulnerability: a modelling study in the China-Myanmar border region of Yunnan Province, China
Creators: name: Chen, Tian-Mu
name: Zhang, Shao-Sen
name: Feng, Jun
name: Xia, Zhi-Gui
name: Luo, Chun-Hai
name: Zeng, Xu-Can
name: Guo, Xiang-Rui
name: Lin, Zu-Rui
name: Zhou, Hong-Ning
name: Zhou, Shui-Sen
Publisher: name: figshare
Year: 2018
Subjects: Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Developmental Biology
Computational Biology

description: Questionnaire for Household Survey in Yingjiang County. (DOCX 29Â kb)
Lymphography guided lymphadenectomy in gastric cancer and benefits of the robot in metabolic bariatric surgery
Creators: name: Jung, Minoa
Publisher: name: Université de Genève
Year: 2022
Subjects: info:eu-repo/classification/ddc/617
Gastric cancer
Lymphography
Fluorescent guided
Indocyanine green
Bariatric surgery
Metabolic surgery
Robotic surgery

description:
Despite new multimodal therapeutic treatments with improved survival, surgery remains the only cure for gastric cancer. The gold standard in surgical treatment for locoregionally advanced resectable gastric cancer is either open total gastrectomy or open distal gastrectomy with radical D2 lymphadenectomy. Minimally invasive gastrectomy has been shown to be beneficial in Japanese and Korean studies in terms of postoperative clinical outcomes while maintaining oncological standards in terms of extensive lymph node harvest and survival. While the shift to minimally invasive laparoscopic and robotic gastrectomy for stages T1-T3 in Asia has already been accomplished, lower incidences, more advanced stages, and higher BMIs have led to slower adoption in Western countries. The quality of the systematic D2 lymphadenectomy is essential for proper staging and for oncologic outcomes.

Our academic work in gastric cancer focused on the lymphatic drainage pattern and visualization of draining lymph nodes and stations in gastric cancer. In collaboration with Professor Hyung and his team at Yonsei University in Seoul, South Korea, we investigated the feasibility of visualization and lymphography-guided lymphadenectomy by peritumoral injection of indocyanine green. The aim was to assess the sensibility of such a tracer to detect all metastatic stations and metastatic lymph nodes in locoregionally advanced gastric cancer.

Bariatric metabolic surgery for obese patients has proven to be beneficial in durable weight loss and effective in resolution of metabolic comorbidites. Among the underestimated metabolic comorbidites are nonalcoholic fatty liver and nonalcoholic steatohepatitis, which afflict up to 90% of obese patients. We investigated whether patients with nonalcoholic steatohepatitis would benefit equally from bariatric surgery compared to patients with simple steatosis.

Meanwhile, rising obesity is leading to technical challenges during surgery, and patients with associated comorbidities can be at increased risk of severe postoperative complications. Striving to standarize Roux-en-Y gastric bypass and to minimize the risk of postoperative complications, particularly leak rates, we started to investigate the robotic approach for this procedure in 2006. We found the robotic approach to be beneficial in terms of postoperative outcomes, particularly leak rates and conversions, and compared our results with the current literature.
Cross-Ancestry GWAS for Major Depression
Creators: name: Peterson, Roseann Elizabeth
name: O'Hara, Rowan Keelee
Publisher: name: OSF Registries
Year: 2023

description: To better understand risk factors for major depression across diverse populations, we propose to examine cross-ancestry phenotypic and genetic associations in the Spit for Science (S4S) data including performing GWAS, estimating heritability and genetic correlation across groups, and testing for sex differences.
Table S2 from Phytoplankton growth rate modelling: can spectroscopic cell chemotyping be superior to physiological predictors?
Creators: name: Fanesi, Andrea
name: Wagner, Heiko
name: Wilhelm, Christian
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Physiology
subject: FOS: Biological sciences
subject: Environmental Science
subject: Plant Biology

description: Percentage of variance explained by each single principal component (PC) of the PLSR model. The explained variance is reported both for the X (C-allocation patterns) and for the Y (growth rate) matrix.
Additional file 2: of Virulent duck enteritis virus infected DEF cells generate a unique pattern of viral microRNAs and a novel set of host microRNAs
Creators: name: Wu, Xianglong
name: Jia, Renyong
name: Zhou, Jiakun
name: Wang, Mingshu
name: Chen, Shun
name: Liu, Mafeng
name: Zhu, Dekang
name: Zhao, Xinxin
name: Sun, Kunfeng
name: Yang, Qiao
name: Wu, Ying
name: Yin, Zhongqiong
name: Chen, Xiaoyue
name: Wang, Jue
name: Cheng, Anchun
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology
subject: Computational Biology

description: Table S2. Distribution of sRNAs in DEV-infected and uninfected samples. (DOCX 15 kb)
The use of the surveillance, epidemiology, and end results (SEER) program of the national cancer institute for the study of oncologic pathologies of plastic surgery interest
Creators: name: Oranges, Carlo
Publisher: name: Université de Genève
Year: 2023
Subjects: info:eu-repo/classification/ddc/617

description:
Plastic surgeons play a fundamental role in the treatment of oncologic diseases both in terms of resection and reconstruction. A good understanding of epidemiology, demographic and clinic-pathologic aspects of the pathologies is essential to plan an optimally patient tailored treatment. The aim of this dissertation is to present five investigations which has been peer-reviewed and published in the field of oncologic diseases of plastic surgery interest.

The following pathologies were investigated: hard palate melanoma, melanoma of the upper limb and shoulder, the Merkel cell carcinoma of the external ear, melanoma of the scalp and neck, and spiradenocarcinoma. The Surveillance, Epidemiology and End Results (SEER) program of the US National Cancer Institute was used as a source of information. The tremendous advantage of using this database is represented by its representativeness of the US population, which allows to investigate in a comprehensive manner demographics, clinical pathologic factors and treatments such as surgery, chemotherapy and radiation therapy. In case of rare entities, such as hard palate melanoma, Merkel cell cancer of the external ear or spiradenocarcinoma, this allows to collect sufficient data to provide the most complete and reliable knowledge of the epidemiology and better therapeutic strategies with reliable outcomes. In case of more common tumors, such as melanoma of the upper arm and shoulder and of the scalp and neck, the analysis of large representative patients’ samples provides the most comprehensive knowledge on the subjects.

On the basis of the results of the presented research, plastic surgeons, dermatologists and oncologists will be able to have a clear vision of prognostic factors to inform the patients and establish a properly tailored treatment.
title: DATA for: Thermodynamic properties of low-dimensional (D<3) Lennard-Jones fluids
Creators: name: Homes, Simon
name: Nitzke, Isabel
name: Vrabec, Jadran
Publisher: name: Technische Universität Berlin
Year: 2025
Subjects: subject: 500 Naturwissenschaften und Mathematik::530 Physik::532 Mechanik der Fluide, Mechanik der Flüssigkeiten
subject: Lennard-Jones potential
subject: Radial pair distribution function (RDF)
subject: 1D
subject: 2D
subject: molecular dynamics

description: The present data is related to the publication "Thermodynamic properties of low-dimensional (D<3) Lennard-Jones fluids" by Simon Homes, Peter Mausbach, Monika Thol, Isabel Nitzke and Jadran Vrabec. The data contain results of molecular dynamics simulations which were conducted to explore the thermodynamic properties of one-dimensional and two-dimensional Lennard-Jones (LJ) fluids. In 1D, the simulations were conducted in the isotropic fluid phase over a wide range of temperatures and densities. A large cutoff radius and long-range corrections were employed. In 2D, the present data include a wide temperature and density range in the isotropic fluid phase as well as investigations of the isotropic-hexatic phase transition. The study of the isotropic-hexatic phase transition focused on two temperatures, T=3 and T=30. Several quantities like the Helmholtz energy derivatives and the chemical potential were sampled during the simulation runs. In addition, the radial pair distribution function (RDF) was calculated and is included in the present data set.
Additional file 3 of Mobile population dynamics and malaria vulnerability: a modelling study in the China-Myanmar border region of Yunnan Province, China
Creators: name: Chen, Tian-Mu
name: Zhang, Shao-Sen
name: Feng, Jun
name: Xia, Zhi-Gui
name: Luo, Chun-Hai
name: Zeng, Xu-Can
name: Guo, Xiang-Rui
name: Lin, Zu-Rui
name: Zhou, Hong-Ning
name: Zhou, Shui-Sen
Publisher: name: figshare
Year: 2018
Subjects: Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Developmental Biology
Computational Biology

description: Parameter definitions and values for the five selected villages. (DOCX 42Â kb)
Latent parasitic infection, safety of live vaccines and low vaccine immunogenicity: the triple burden of the immunosuppressed traveller
Creators: name: Eperon, Gilles Alain
Publisher: name: Université de Genève
Year: 2023
Subjects: info:eu-repo/classification/ddc/613
Immunosuppression
Travelers
Vaccination
Latent parasitic infection
Immunogenicity
Biological therapy

description:
Introduction : With the rise of biological treatments, the practice of travel medicine become more complex. Moreover, biological treatments are likely to have impact on the risk of infection on population in low-income countries. As a result, the immunosuppressed travellers represent a sentinel population useful to study. Three main burdens stand out: the risk of opportunistic diseases, the safety of live vaccines and vaccine efficacy.

Objectives & Methods : The aim is to present the current knowledge faced by the immunosuppressed traveller. As there is little evidence and most recommendations are based on expert opinion, evidence is needed. Four studies covering the full range of the triple burden are presented below.

Results & discussion : The screening for latent infections allows the diagnosis in immunosuppressed patients, even in a non-endemic country. It is important to carry out screening prior to any immunosuppressive treatment. While the benefit of vaccination is largely accepted in populations suffering from autoimmune diseases, there remain certain contraindications based on a cautious attitude. The observed absence of increased risk of yellow fever vaccination in multiple sclerosis patients in a retrospective study is the first step before larger study. Immunosuppressive treatments, particularly biological treatments, came in wide diversity. Thus, a broad contraindication without considering pharmaco-immunological mechanisms puts at risk a population exposed to complications of vaccine-preventable diseases. While a retrospective review of weakly immunosuppressed patients exposed to live attenuated vaccines provides reassurance of the absence of serious side-effects, a prospective study of a small sample of patients on low-dose methotrexate seems to confirm the absence of a vaccine contraindication in this population, and to observe an effective immune response.

Conclusion : We live in a global society. It is vital to take account of the mobility factor when it comes to infectious diseases and the potential means of preventing. However, while it is essential not to overlook potential risks of vaccination, it is equally important to ensure the protection of vulnerable populations. Given the complexity and heterogeneity of situations, an individualized approach seems necessary.
Electronic supplementary material - queen, figure 2 from Life-history evolution in ants: the case of Cardiocondyla
Creators: name: Heinze, Jürgen
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 60801 Animal Behaviour

description: Phylogeny of the ant genus Cardiocondyla and reconstruction of the most parsimonious ancestral queen number of the genus (polygyny: black; monogyny: blue; functional monogyny / queen competition: green; unknown: hatched grey). For details see caption of figure 1.
Supplemental methods and figures S1-S2 from Covert deformed wing virus infections have long-term deleterious effects on honeybee foraging and survival
Creators: name: Benaets, Kristof
name: Geystelen, Anneleen Van
name: Cardoen, Dries
name: Smet, Lina De
name: Graaf, Dirk C. De
name: Schoofs, Liliane
name: Larmuseau, Maarten H. D.
name: Brettell, Laura E.
name: Martin, Stephen J.
name: Wenseleers, Tom
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Health Care
subject: Diseases
subject: 111706 Epidemiology
subject: FOS: Health sciences
subject: 60801 Animal Behaviour
subject: FOS: Biological sciences

description: Several studies have suggested that covert stressors can contribute to bee colony declines. Here we provide a novel case study and show using radiofrequency identification tracking technology that covert deformed wing virus (DWV) infections in adult honeybee workers seriously impact long-term foraging and survival under natural foraging conditions. In particular, our experiments show that adult workers injected with low doses of DWV experienced increased mortality rates, that DWV caused workers to start foraging at a premature age, and that the virus reduced the workers' total activity span as foragers. Altogether, these results demonstrate that covert DWV infections have strongly deleterious effects on honeybee foraging and survival. These results are consistent with previous studies that suggested DWV to be an important contributor to the ongoing bee declines in Europe and the USA. Overall, our study underlines the strong impact that covert pathogen infections can have on individual and group-level performance in bees.
Ward & Branstetter ESM figures from The acacia ants revisited: convergent evolution and biogeographic context in an iconic ant/plant mutualism
Creators: name: Ward, Philip S.
name: Branstetter, Michael G.
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 60301 Animal Systematics and Taxonomy
subject: 60310 Plant Systematics and Taxonomy

description: Electronic supplementary material, figures S1-S6
Ecological resilience decreases and stability to freeloader invasion increases as the death rate increases in both the yeast-sucrose system and the Ecological Public Goods Game. from Cooperators trade off ecological resilience and evolutionary stability in public goods games
Creators: name: Rauch, Joseph
name: Kondev, Jane
name: Sanchez, Alvaro
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 60114 Systems Biology
subject: 60113 Synthetic Biology

description: a) Recently published data of yeast growing in sucrose[4,5] was used to calculate the ecological resilience[5] (green) and stability to freeloader invasion (red) of a pure cooperator population as the dilution factor (an experimentally controllable effective death rate) is varied. As the dilution factor increases the ecological resilience diminishes but the stability to freeloader invasion increases. b) Consistent with the yeast experimental data, the EPGG ecological resilience decreases as the death rate increase, while the stability to freeloader invasion increases as the death rate increases. Data was simulated by increasing d from 0.5 to 5, while fixing N = 25, r = 7.0.
Additional File 3:
Creators: name: Wu, Xianglong
name: Jia, Renyong
name: Zhou, Jiakun
name: Wang, Mingshu
name: Chen, Shun
name: Liu, Mafeng
name: Zhu, Dekang
name: Zhao, Xinxin
name: Sun, Kunfeng
name: Yang, Qiao
name: Wu, Ying
name: Yin, Zhongqiong
name: Chen, Xiaoyue
name: Wang, Jue
name: Cheng, Anchun
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: The expression profiling of CHv miRNAs and pre-miRNA secondary structures. MiRNA sequences and their coresponding reads mapped on the precursors of CHv miRNA genes. Opening parentheses indicate pairing nucleotides. Inside the closed parentheses indicate the minimum free energy for the secondary structure of the miRNA. The number of reads mapped to the miRNA precursors is indicated in the right side. Mature miRNAs are denoted in red. The hairpin structures of pre-miRNA is shown at the back. (PDF 649 kb)
Electronic supplementary material - male, figure 3 from Life-history evolution in ants: the case of Cardiocondyla
Creators: name: Heinze, Jürgen
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 60801 Animal Behaviour

description: Phylogeny of the ant genus Cardiocondyla and reconstruction of the most parsimonious ancestral male morphology in this genus (male polyphenism: black; only wingless males: green; unknown: hatched grey). For details see caption of figure 1. Several species, e.g., C. nr. atalanta, C. nuda and, in a few populations, C. kagutsuchi and C. venustula have males that combine the typical morphology of winged fighter males with vestigial wings.
Management of dyslipidemia in patientswith cardiovascular disease”
Creators: name: Gencer, Baris
Publisher: name: Université de Genève
Year: 2023
Subjects: info:eu-repo/classification/ddc/616

description:
Cardiovascular disease (CVD) is the most common cause of morbidity and mortality w in Switzerland. Several clinical trials have demonstrated that therapies reducing lipoprotein cholesterol (LDL-C) levels were beneficial in terms of major adverse cardiovascular events (MACE) risk reduction. Most of the evidence derived from statin therapy, and in patients with already established CVD, whereas the evidence remains weaker in primary prevention. Non-statin therapies have also been tested on top of statin to evaluate if additional lowering of LDL-C levels could influence clinical outcomes. Two therapies ezetimibe and proprotein convertase subtilisin kexin 9 (PCSK9) inhibitors have shown positive results in patients with already established CVD. For this reason, the 2019 European Society of Cardiology (ESC) guidelines recommend in very-high risk patients both a reduction of LDL-C of ≥50% and an LDL-C target of < 55 mg/dL (<1.4 mmol/l) and the combination of statin with non-statin therapies to reach those targets.

The work presented in this thesis explored key aspects of lipid-lowering therapies in patients with acute coronary syndromes (ACS), a very-high risk group of patients. We first investigated the impact of a hospital-based secondary prevention on outcomes, then the reasons for therapies discontinuation and how the achievement of LDL-C targets and eligibility for novel treatment can depend on the guidelines definition. We also studied the benefice of early and intensive lowering LDL-C in patients with a recent myocardial infarction and discussed whether novel aggressive therapies should be implemented or not at the time of ACS hospitalization. We then summarized the evidence of LDL-C lowering in the elderly, which was a neglected subgroup so far in most of the trials and observed that reaching very low LDL-C levels was safe for cognition. Pursuing the safety of lipid-lowering therapies, we summarized the evidence regarding the risk of atrial fibrillation events observed in trials testing marine omega-3 supplementation, which is widely used to lower triglycerides levels. Since risk prediction and individualization of therapies are key aspects of management, we investigated the prognosis role of novel biomarkers, such as PCSK9, trimethylamine N-oxide (TMAO), ceramides and testosterone levels. Finally, we also studied lifestyle interventions to help smokers to quit smoking and planned an ongoing trial on the safety of moderate alcohol consumption after a recent myocardial compared to abstinence.
Additional File 4:
Creators: name: Wu, Xianglong
name: Jia, Renyong
name: Zhou, Jiakun
name: Wang, Mingshu
name: Chen, Shun
name: Liu, Mafeng
name: Zhu, Dekang
name: Zhao, Xinxin
name: Sun, Kunfeng
name: Yang, Qiao
name: Wu, Ying
name: Yin, Zhongqiong
name: Chen, Xiaoyue
name: Wang, Jue
name: Cheng, Anchun
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Figure S2. Regulatory network of CHv-encoded miRNAs and CHv genes. a Gene regulatory network formed by CHv-encoded miRNAs (red ellipses) and their target genes (yellow ectangles). b Gene regulatory network of CHv-encoded miRNAs (red ellipses) and their target immediate-early(IE) genes (yellow rectangles) (PDF 401 kb)
title: Préface_Guide de l'amateur de monnaies des empereurs gallo-romains
Creators: name: AmateurS
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2021

description: Préface
description: ID_PARA_01112
Effect of blocking procedure for 1h from Variation in wall shear stress in channel networks of zebrafish models
Creators: name: Woorak Choi
name: Kim, Hye Mi
name: Sungho Park
name: Eunseop Yeom
name: Junsang Doh
name: Lee, Sang Joon
Publisher: name: The Royal Society
Year: 2017
Subjects: subject: Biological Engineering
subject: 110601 Biomechanics
subject: FOS: Health sciences

description: Blood flow in the blood-vessel network is visualized with the standard deviation projection method after (a) 30 min and (b) 1 h from the blocking of blood flow at the ISV2
Women and cardiovascular diseases: an overview on prevention and cardiac rehabilitation
Creators: name: Tessitore, Elena
Publisher: name: Université de Genève
Year: 2023
Subjects: info:eu-repo/classification/ddc/616
Cardiovascular diseases
Cardiovascular prevention
Cardiac rehabilitation in women

description:
Cardiovascular diseases (CVD) are a clear example where sex and gender play a role not only in the pathogenesis, but also in the clinical manifestation, because of biological differences, sex-specific cardiovascular risk factors (CVRF), different outcomes and mortality. Improved adherence to gender-specific guidelines and adequate inclusion of women in clinical trials are still needed to address disparities in this field.

Cardiovascular (CV) screening and CV score calculation from health care providers must be encouraged particularly in women, because their risk is often underestimated, both by the patient and by the physician. Considering traditional CVRF, diabetes and smoking are considered to induce a greater risk for CVD in women than in men. Hypertension is underdiagnosed in women, and even when it is detected, less than ¼ women have controlled blood pressure values. CVRF specific to women has also been identified, as early menarche, early menopause, premature ovarian failure, polycystic ovary syndrome, endometriosis, or complications during pregnancy (pre-eclampsia, gestational diabetes, gestational hypertension, peripartum cardiomyopathy). Due to the evolving CV health in females and to modifications that occur with advancing age at the menopause, it is imperative to promote CV prevention across all stages of a woman’s life.

Sex-related differences from pathogenesis to manifestation of CVD have been described. The characteristics of atherosclerotic plaques in younger women are more prone to erosion, rather than plaque rupture. Symptoms can also be different, particularly for acute coronary syndrome with less specific symptoms in younger women. When it comes to cardiac rehabilitation (CR), women participate less than men to CR programs and difficulties have been identified in referral, enrollment and adherence, despite the well-described benefits in women after an acute cardiac event, respectively for morbidity, mortality, functional capacity and quality of life. To improve CR participation in women, we need to offer tailored CR programs to women's needs, as well as behavioral models, to increase long-term adherence to healthy lifestyles.

This narrative review aims to underline the role of sex and gender in CVD and summarizes CV prevention, traditional CVRF as well as female-specific risk factors, gender-specific characteristics of CV manifestation and CR in women.