Additional file 1 of The mitochondrial genome of Heterosentis pseudobagri (Wang &amp; Zhang, 1987) Pichelin &amp; Cribb, 1999 reveals novel aspects of tRNA genes evolution in Acanthocephala
Creators: name: Gao, Jin-Wei
name: Yuan, Xi-Ping
name: Jakovlić, Ivan
name: Wu, Hao
name: Xiang, Chuan-Yu
name: Xie, Min
name: Song, Rui
name: Xie, Zhong-Gui
name: Wu, Yuan-An
name: Ou, Dong-Sheng
Publisher: name: figshare
Year: 2023
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Additional figures and tables. Figure S1. Maximum Likelihood phylogenetic analysis of the Acanthocephala mitogenomic dataset based on nucleotide sequences of all 12 mitogenomic protein-coding genes. Numbers at nodes indicate SH-aLRT support, H. pseudobagri is highlighted using colour shading, and family, order and class-level identities are shown to the right in that order (left to right). Figure S2. Bayesian Inference phylogenetic analysis of the Acanthocephala mitogenomic dataset based on nucleotide sequences of all 12 mitogenomic protein-coding genes.Numbers at nodes indicate posterior probability support, H. pseudobagri is highlighted using colour shading, and family, order and class-level identities are shown to the right in that order (left to right). Figure S3. Maximum Likelihood phylogenetic analysis of the Acanthocephala mitogenomic dataset based on 1st and 2nd codon positions of nucleotide sequences of all 12 mitogenomic protein-coding genes.Numbers at nodes indicate SH-aLRT support, H. pseudobagri is highlighted using colour shading, and family, order and class-level identities are shown to the right in that order (left to right). Figure S4. The architecture of the mitogenome of H. pseudobagri. Figure S5. Gene orders of H. pseudobagri and the remaining available Acanthocephala mitogenomes.Species names are given with corresponding GenBank accession numbers. Family, order, and class-level taxonomic identities are shown to the right. NCR indicates an intergenic region &gt;100 bp. Figure S6. The mitogenome of H. pseudobagri assembled using the transcriptome data. Figure S7. Acanthocephalan trnQ alignment. Figure S8. Acanthocephalan trnG (tRNA-Gly) alignment. Figure S9. Acanthocephalan trnY alignment. Figure S10. Acanthocephalan trnL1 alignment. Figure S11. Acanthocephalan trnD alignment. Figure S12. Acanthocephalan trnW alignment. Figure S13. The alternative folding of Heterosentis pseudobagri trnW inferred by ARWEN (trnS). Figure S14. Acanthocephalan trnV alignment. Figure S15. Acanthocephalan trnK alignment. Figure S16. Acanthocephalan trnE alignment. Figure S17. Acanthocephalan trnT alignment. FigureS18. Acanthocephalan trnS2 alignment. Figure S19. Acanthocephalan trnH alignment. Figure S20. Acanthocephalan trnL2 alignment. Figure S21. Acanthocephalan trnP alignment. Figure S22. Acanthocephalan trnI alignment. Figure S23. Acanthocephalan trnM alignment. Figure S24. Acanthocephalan trnF alignment. Figure S25. Acanthocephalan trnC alignment. Figure S26. Acanthocephalan trnA alignment. Figure S27. Acanthocephalan trnR alignment. Figure S28. Acanthocephalan trnN alignment. Figure S29. Acanthocephalan trnS1 alignment. Table S1. Primers used for the amplification and sequencing of the mitogenome of H. pseudobagri.