cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 2: of Seeking the state of the art in standardized measurement of health care resource use and costs in juvenile idiopathic arthritis: a scoping review
Creators: name: Kip, Michelle
name: Currie, Gillian
name: Marshall, Deborah
name: Lago, Luiza Grazziotin
name: Twilt, Marinka
name: Vastert, Sebastiaan
name: Swart, Joost
name: Wulffraat, Nico
name: Yeung, Rae
name: Benseler, Susanne
name: IJzerman, Maarten
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Molecular Biology
subject: Ecology
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Science Policy

description: Results of scoping review. This file provides an extensive overview of the results of the scoping review. (DOCX 564 kb)
Topological constraints on the dynamics of vortex formation in a two-dimensional quantum fluid
Creators: name: Congy, Thibault
name: Azam, Pierre
name: Kaiser, Robin
name: Pavloff, Nicolas
Publisher: name: arXiv
Year: 2023
Subjects: subject: Optics (physics.optics)
subject: Quantum Gases (cond-mat.quant-gas)
subject: Pattern Formation and Solitons (nlin.PS)
subject: FOS: Physical sciences

description: We present experimental and theoretical results on formation of quantum vortices in a laser beam propagating in a nonlinear medium. Topological constrains richer than the mere conservation of vorticity impose an elaborate dynamical behavior to the formation and annihilation of vortex-antivortex pairs. We identify two such mechanisms, both described by the same fold-Hopf bifurcation. One of them is particularly efficient although it is not observed in the context of liquid helium films or stationary systems because it relies on the compressible nature of the fluid of light we consider and on the non-stationarity of its flow.
Additional file 8: of Frequency of pathogenic germline variants in BRCA1, BRCA2, PALB2, CHEK2 and TP53 in ductal carcinoma in situ diagnosed in women under the age of 50â years
Creators: name: Petridis, Christos
name: Iteeka Arora
name: Shah, Vandna
name: Megalios, Anargyros
name: Moss, Charlotte
name: Mera, Anca
name: Clifford, Angela
name: Gillett, Cheryl
name: Pinder, Sarah
name: Tomlinson, Ian
name: Roylance, Rebecca
name: Simpson, Michael
name: Sawyer, Elinor
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: PALB2 pathogenic variants in cases. (DOCX 19 kb)
Dispersion free control of hydroelastic waves down to sub-wavelength scale
Creators: name: Domino, Lucie
name: Fermigier, M.
name: Fort, E.
name: Eddi, A.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: Classical Physics (physics.class-ph)
subject: FOS: Physical sciences

description: Hydroelastic surface waves propagate at the surface of water covered by a thin elastic sheet and can be directly measured with accurate space and time resolution. We present an experimental approach using hydroelastic waves that allows us to control waves down to the sub-wavelength scale. We tune the wave dispersion relation by varying locally the properties of the elastic cover and we introduce a local index contrast. This index contrast is independent of the frequency leading to a dispersion-free Snell-Descartes law for hydroelastic waves. We then show experimental evidence of broadband focusing, reflection and refraction of the waves. We also investigate the limits of diffraction through the example of a macroscopic analog to optical nanojets, revealing that any sub-wavelength configuration gives access to new features for surface waves.
Unveiling the effect of Ni on the formation and structure of Earth's inner core
Creators: name: Sun, Yang
name: Mendelev, Mikhail I.
name: Zhang, Feng
name: Liu, Xun
name: Da, Bo
name: Wang, Cai-Zhuang
name: Wentzcovitch, Renata M.
name: Ho, Kai-Ming
Publisher: name: arXiv
Year: 2023
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Geophysics (physics.geo-ph)
subject: FOS: Physical sciences

description: Ni is the second most abundant element in the Earth's core. Yet, its effects on the inner core's structure and formation process are usually disregarded because of its electronic and size similarity with Fe. Using ab initio molecular dynamics simulations, we find that the bcc phase can spontaneously crystallize in liquid Ni at temperatures above Fe's melting point at inner core pressures. The melting temperature of Ni is shown to be 700-800 K higher than that of Fe at 323-360 GPa. hcp, bcc, and liquid phase relation differ for Fe and Ni. Ni can be a bcc stabilizer for Fe at high temperatures and inner core pressures. A small amount of Ni can accelerate Fe's crystallization at core pressures. These results suggest Ni may substantially impact the structure and formation process of the solid inner core.
Additional file 1: of Seeking the state of the art in standardized measurement of health care resource use and costs in juvenile idiopathic arthritis: a scoping review
Creators: name: Kip, Michelle
name: Currie, Gillian
name: Marshall, Deborah
name: Lago, Luiza Grazziotin
name: Twilt, Marinka
name: Vastert, Sebastiaan
name: Swart, Joost
name: Wulffraat, Nico
name: Yeung, Rae
name: Benseler, Susanne
name: IJzerman, Maarten
Publisher: name: figshare
Year: 2019
Subjects: subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Science Policy

description: Overview of search strategy. This file provides an overview of the search strategy performed in Embase and in PubMed. (DOCX 17 kb)
On the "Legendre scalarization" of nonlinear gravity theories
Creators: name: Magnano, Guido
Publisher: name: arXiv
Year: 2023
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We discuss the proposal of a new method to transform a f(R) metric gravity theory into a general relativistic theory including an auxiliary scalar field, recently introduced by S. Cotsakis et al. We argue that (i) the fact that the fourth order equations of f(R) metric gravity can be recast (via a Legendre transformation) into Einstein equations without any conformal rescaling has been thoroughly clarified in the previous literature, and (ii) the newly proposed method produces a set of equations that are not equivalent to the original theory. In the conclusion, a comment is added on another aspect of the Legendre transformation which seems to be generally overlooked.
Additional file 7: of Frequency of pathogenic germline variants in BRCA1, BRCA2, PALB2, CHEK2 and TP53 in ductal carcinoma in situ diagnosed in women under the age of 50â years
Creators: name: Petridis, Christos
name: Iteeka Arora
name: Shah, Vandna
name: Megalios, Anargyros
name: Moss, Charlotte
name: Mera, Anca
name: Clifford, Angela
name: Gillett, Cheryl
name: Pinder, Sarah
name: Tomlinson, Ian
name: Roylance, Rebecca
name: Simpson, Michael
name: Sawyer, Elinor
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: CHEK2 pathogenic variants in cases. (DOCX 20 kb)
Toward a Buddhist Philosophy and Practice of Human Rights
Creators: Kelley, Christopher
Publisher: name: Columbia University
Year: 2015
Subjects: subject: Religion
subject: Philosophy
subject: FOS: Philosophy, ethics and religion
subject: Human rights
subject: Buddhism
subject: Mādhyamika (Buddhism)

description: The 14th Dalai Lama-Tenzin Gyatso (DL) has expressed strong support for the Universal Declaration of Human Rights (UDHR). While this may seem to be consistent with his outspoken promotion of basic "human values" and "universal responsibility" (Piburn, 2002), there is an unresolved metaphysical conflict between his endorsement of the UDHR and concomitant ideas like "inherent dignity" and "inalienable rights," on the one hand, and, on the other, his espousal of the Buddhist "Middle Way" or "Centrist" (Madhyamaka) thesis that all phenomena (i.e., persons, things, and ideas like "human rights") lack "intrinsic existence" (svabhāva). In this dissertation I argue that an "unforced consensus" (Taylor 2011) on rights can be achieved through an application of the Madhyamaka interpretation of the "two truths" (dvasatya; bden pa gnyis). Metaphysics, however, is only one dimension of the Madhyamaka account of reality. There is an equally (if not more) important "cognitive dimension" that pertains to how one sees and interacts with the world (Westerhoff, 2009). I believe this can be effectively applied to an analysis of the psychology of human rights foundationalism (i.e., the mindset that reifies rights). The DL believes that ultimately the safeguarding of human rights culture depends on a cognitive shift at the individual level. I explore the philosophical implications of this belief, and I contend that it is consistent with the concept of human development and education in the UDHR. I conclude that Tibetan Buddhist ideas and practices can potentially help bridge the divide between human rights foundationalism and anti-foundationalism in a manner that reinvigorates the utility of the UDHR, and yet does not philosophically yield to an essentialist world-view.
Revision in writing : cognitive and linguistic aspects
Creators: name: Parr, Judith Margaret
Publisher: name: The Australian National University
Year: 1989

description: Despite its importance to good writing, revision has been only recently researched and is still poorly understood. Studies on the topic have tended to focus either on text-specific knowledge or on general cognitive factors as possible foundations of effective revision. Perhaps this tendency to focus on one of these aspects, to the exclusion of the other, contributes to our current confusion when faced with explaining revision, predicting revision performance or instructing students in ways of revising their written work. The study reported in this thesis paid due regard to each of the two foci of enquiry outlined above. It comprised both an investigation of the relationship between revision and text-related knowledge (Part I of the thesis) and an investigation of the relationship between revision and selected cognitive abilities(Part II), in three age samples from a secondary school population. In the research reported in Part I (Chapters 3-5) an error identification paradigm was used in conjunction with two theoretical frameworks, one specifying the major subprocesses of revision, the other delineating criteria for good writing. The principal fmdings from this research were i) that there were increases with age in the range of criteria to which the students adhered, tacitly or explicitly, and ii) that, while tacit acknowledgement of the importance of a criterion generally implied that it could also be applied explicitly, the fom1er did not always entail the latter. Part II (Chapters 6-8) of the thesis was concerned with the general cognitive skills underpinning revision. These skills were initially derived from an analysis of the component processes of revision. The analysis resulted in the postulation of five skills as being particularly pertinent. All five were found to be significantly correlated with revision performance in bivariate correlational analyses, and three were found to remain so in multivariate analyses. Following Part II of the thesis. a fmal chapter (Chapter 9) reviews the results of both parts in terms of their theoretical, assessment and instructional implications.
title: Braunschweigische Anzeigen : offizielles Regierungs- und Anzeigeblatt. 64. Jahr 1808
Creators: name: :None
Publisher: name: Waisenhaus-Buchdruckerei
Year: 1808
Subjects: subject: Brunsvicensien der Universitätsbibliothek Braunschweig
subject: Braunschweigische Anzeigen
subject: 902

description: Braunschweigische Anzeigen: offizielles Regierungs- und Anzeigeblatt, vol. 64. 1808
Aggregate Efficiency, Market Demand, And The Sustainability Of Collusion
Creators: name: Lambson, Val Eugene
name: Lambson, Val Eugene
Publisher: name: Unknown
Year: 1985
Subjects: Research Methods/ Statistical Methods

description: The effects of firms' aggregate productive efficiency and the level of demand on collusion are studied by considering very general collections of Cournot markets that differ in these variables. The results are very general. Firms are not required to be identical within nor across markets and the number of firms and level of demand are allowed to vary without restriction across markets. It is found that collusion can be ruled out in markets where aggregate efficiency (i.e. the ability of firms to profitably produce at prices exceeding the Cournot price) is large relative to the level of demand.
Topological Inflation with Multiple Winding
Creators: name: de Laix, Andrew A.
name: Trodden, Mark
name: Vachaspati, Tanmay
Publisher: name: arXiv
Year: 1998
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Astrophysics (astro-ph)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We analyze the core dynamics of critically coupled, superheavy gauge vortices in the (2+1) dimensional Einstein-Abelian-Higgs system. By numerically solving the Eistein and field equations for various values of the symmetry breaking scale, we identify the regime in which static solutions cease to exist and topological inflation begins. We explicitly include the topological winding of the vortices into the calculation and extract the dependence on the winding of the critical scale separating the static and inflating regimes. Extrapolation of our results suggests that topological inflation might occur within high winding strings formed at the Grand Unified scale.
description: 13 pages, 4 figures, RevTeX
Sicyopus zosterophorus
Creators: name: Donaldson, James
name: Maeda, Ken
name: Iida, Midori
name: Kobayashi, Hirozumi
name: Ebner, Brendan C.
name: Tran, Hau Duc
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Perciformes
Gobiidae
Sicyopus
Sicyopus zosterophorus

description: Sicyopus zosterophorus (Bleeker, 1856),
HNUE-F00296, 1 male (39.8 mm SL) and 2 females (43.4- 44.1 mm SL), stream 3, 16 Oct. 2018.
description: Published as part of Donaldson, James, Maeda, Ken, Iida, Midori, Kobayashi, Hirozumi, Ebner, Brendan C. & Tran, Hau Duc, 2023, New distributional records of four amphidromous gobies (Gobioidei: Sicydiinae) in continental Vietnam, pp. 467-472 in Cybium 47 (4) on page 468, DOI: 10.26028/cybium/2023-019, http://zenodo.org/record/12713800
Toward a History of Mathematics Education for Young Women: 1890–1920
Creators: Shvartsberg, Yana
Publisher: name: Columbia University
Year: 2020
Subjects: Mathematics--Study and teaching
Women in mathematics
Education--Mathematics
Educational change
Education

description: This dissertation is dedicated to the historical review of female mathematics education during the Progressive Era, from 1890 through 1920. This time period is known in the United States for multiple social reforms. Secondary schools experienced rapid expansion in enrollment, and the purpose and direction of education underwent development and change. During this era, a secondary education, which had been available to few, came to be accepted as a necessity for a majority of children in the United States. During this period of development and change, the educational system encountered several challenges. One such challenge was to tailor curricula according to the needs of different students. In parallel with increased enrollment, labor market demands experienced changes as well, and these changes were especially prominent in the urban areas. Historical evidence documents that the purpose of girls’ and boys’ education was often considered to be distinct. This belief stemmed from the idea that girls and boys had different career paths upon high school graduation. Therefore, differentiation of curricula received needed support and allowed schools to provide an elective system of subjects within high schools. This dissertation provides historical analysis of the mathematics education available for girls in the Progressive Era, focusing on the purpose of mathematics education, on curricula differentiation facilitated by an elective system, and on social factors that affected girls’ enrollment into the mathematics classes when the election of mathematics classes was allowed.
Toward a Global Enlightenment: Music, Missionaries, and the Construction of a Universal History in Seventeenth- and Eighteenth-Century China and Europe
Creators: Jiang, Qingfan
Publisher: name: Columbia University
Year: 2021
Subjects: Music history
Jesuits
Missionaries
East and West
Musicology

description: My dissertation explores the transmission of musical knowledge between China, Portugal, and France in the context of a global Enlightenment. Through the lenses of two treatises authored by Jesuit missionaries serving at the Chinese Imperial Court––one introducing Western music to China, the other introducing Chinese music to France––I investigate how music and the system of knowledge represented by each treatise challenged their audience's worldview: although their interpretation differed, both the Europeans and the Chinese acknowledged China as the origin of the Western civilization. I argue that this construction of a universal history that accommodates all cultures on a single timeline shows there was a common effort across the globe to systematize the diversity of the world's musical cultures into one coherent principle and, more importantly, that the Enlightenment did not originate in Europe but was built on a shared effort of the East and the West to use history to make sense of the expanding globe. My research offers a new model for musicological studies by situating music at the intersection between East Asian Studies, Mission Studies, History of Science, and Global History. Moreover, it challenges the preconceived notion of the Enlightenment as a purely European phenomenon and argues instead that the Enlightenment was global at its inception. In doing so, it moves beyond the framework of dissemination and the comparative approach that characterize much of the past scholarship on global history. Emphasizing simultaneous emergence over successive development and integration over connection, I examine how local societies actively incorporated foreign systems of knowledge in the face of globalizing forces and how this incorporation not only expanded but also transformed their conception of the world.
PP-waves from Nonlocal Theories
Creators: name: Alishahiha, Mohsen
name: Kumar, Alok
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We study the Penrose limit of ODp theory. There are two different PP-wave limits of the theory. One of them is a ten dimensional PP-wave and the other a four dimensional one. We observe the later one leads to an exactly solvable background for type II string theories where we have both NS and RR fields. The Penrose limit of different branes of string (M-theory) in a nonzero B/E field (C field) is also studied. These backgrounds are conjectured to provide dual description of NCSYM, NCOS and OM theory. We see that under S-duality the subsector of NCSYM$_4$ and NCOS$_4$ which are dual to the corresponding string theory on PP-wave coming from NCYM$_4$ and NCOS$_4$ map to each other for given null geodesic.
description: 19 pages, few comments and references added (version to appear in JHEP)
Subhalo effective density slope measurements from HST strong lensing data with neural likelihood-ratio estimation
Creators: name: Zhang, Gemma
name: Şengül, Atınç Çağan
name: Dvorkin, Cora
Publisher: name: arXiv
Year: 2023
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Examining the properties of subhalos with strong gravitational lensing images can shed light on the nature of dark matter. From upcoming large-scale surveys, we expect to discover orders of magnitude more strong lens systems that can be used for subhalo studies. To optimally extract information from a large number of strong lensing images, machine learning provides promising avenues for efficient analysis that is unachievable with traditional analysis methods, but application of machine learning techniques to real observations is still limited. We build upon previous work, which uses a neural likelihood-ratio estimator, to constrain the effective density slopes of subhalos and demonstrate the feasibility of this method on real strong lensing observations. To do this, we implement significant improvements to the forward simulation pipeline and undertake careful model evaluation using simulated images. Ultimately, we use our trained model to predict the effective subhalo density slope from combining a set of strong lensing images taken by the \textit{Hubble Space Telescope}. We found the subhalo slope measurement of this set of observations to be steeper than the slope predictions of cold dark matter subhalos. Our result adds to several previous works that also measured high subhalo slopes in observations. Although a possible explanation for this is that subhalos with steeper slopes are easier to detect due to selection effects and thus contribute to statistical bias, our result nevertheless points to the need for careful analysis of more strong lensing observations from future surveys.
description: 11 pages, 6 figures, v2; matches published version in MNRAS
Additional file 1 of Risk factors for administration of additional neuromuscular block reversal in adults undergoing general anaesthesia: a single centre retrospective case-control study
Creators: name: Vishneski, Susan R.
name: Saha, Amit K.
name: Tran, Lan C.
name: Fernando, Rohesh J.
name: Acharya, Suneeta K.
name: Lee, Lisa K.
name: Templeton, Leah B.
name: Brooks, Amber K.
name: Smith, L. Daniela
name: Templeton, T. Wesley
Publisher: name: figshare
Year: 2025
Subjects: subject: Biophysics
subject: Medicine
subject: Cell Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Developmental Biology
subject: Mental Health
subject: Computational Biology

description: Supplementary Material 1
Toward a Generalized Model of Biomedical Query Mediation  to Improve Electronic Health Record Data Retrieval
Creators: Hruby, Gregory William
Publisher: name: Columbia University
Year: 2016
Subjects: subject: Medical records
subject: Bioinformatics
subject: FOS: Computer and information sciences
subject: Medical electronics
subject: Medical records--Data processing
subject: Information science

description: The electronic health record (EHR) is an invaluable resource for medical knowledge discovery. EHR data interrogation requires significant medical and technical knowledge. To access EHR data, medical researchers often rely on query analysts to translate their EHR information needs into EHR database queries. The conversation between the medical researcher and the query analyst is an information needs negotiation; I have named this process biomedical query mediation (BQM). There exists no BQM standard to guide medical researchers and query analysts to effectively bridge the communication gap between these medical and technical experts. The current practice of BQM likely varies among query analysts. This variation may contribute to the delivery of EHR data sets with varying degrees of accuracy. For example, a query analyst may return an EHR dataset that misrepresents the medical researcher’s information need or another query analyst may return a different EHR dataset to the medical researcher for the same information need. The process used to formulate the medical researcher’s information need and translate that need into an executable EHR database query may have severe downstream consequences affecting the reliability and quality of EHR datasets for medical research. This dissertation contributes early understandings of the BQM process and thereby improves the transparency and highlights the complexity of BQM by completing five studies: 1) survey the literature from other information intensive scientific disciplines to identify knowledge and methods potentially useful for BQM, 2) perform a review of existing tools and forms for assisting researchers in BQM, 3) perform a content analysis of the BQM process, 4) conduct a cognitive task analysis to detail a generalized workflow, and 5) develop an enriched concept schema to capture comprehensive EHR data needs. This dissertation employs extensive qualitative methods using grounded theory, expert interviews, and cognitive task analysis to produce a deep understanding of BQM. Additionally, I contribute a promising concept class schema to represent medical researchers’ EHR data needs to help standardize the BQM process.
Toward a European Bund. The Constitutionalism Deficit of Integration and How to Fix It
Creators: Domeyer, Axel
Publisher: name: Columbia University
Year: 2012
Subjects: subject: Political science
subject: FOS: Political science
subject: Law
subject: FOS: Law

description: This dissertation examines the nature of the European political and legal order and evaluates it in light of the principles of liberal and democratic constitutionalism. The EU, I argue, has features of both an international organization and a heterarchical federation, or Bund, in which neither the units nor the center are sovereign and the member state peoples retain their independent political existence. Due to its peculiar hybrid character, the status quo has a constitutionalism deficit: enforcement of formal competence limits is weak, the legislative process is undemocratic, and the European Court of Justice wields too much unchecked power to elaborate the content of basic rights. Adequate reform would eliminate residual features of the international organization model and establish a proper Bund. The dissertation examines how this political form differs from a federal state and provides normative reasons to prefer a heterarchical solution. I further contend that in a possible future Bund, domestic parliaments should have a stronger oversight role. The European Parliament might then still have a supporting function, but direct election would no longer be useful and indeed counterproductive. Last, the dissertation argues that if a federal compact were agreed upon, the best ratification method would be to hold national conventions, similar to the state assemblies that ratified the US constitution. This procedure is superior to both a national referendum and a vote of the domestic parliament.
Structure refinement from 'Digital' Large Angle Convergent Beam Electron Diffraction Patterns
Creators: name: Hubert, Alex
name: Römer, Rudolf A.
name: Beanland, Richard
Publisher: name: arXiv
Year: 2018
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We use semi-automated data acquisition and processing to produce digital large angle CBED (D-LACBED) patterns. We demonstrate refinements of atomic coordinates and isotropic Debye-Waller factors for well-known materials using simulations produced with a neutral, spherical independent atom model. We find that atomic coordinate refinements in Al2O3 have sub-pm precision and accuracy. Isotropic DWFs are accurate for Cu, a simple fcc metal, but do not agree with X-ray measurements of GaAs or Al2O3. This indicates that models of bonding will be essential to fully interpret D-LACBED data.
Broken Kramers' degeneracy in altermagnetic MnTe
Creators: name: Lee, Suyoung
name: Lee, Sangjae
name: Jung, Saegyeol
name: Jung, Jiwon
name: Kim, Donghan
name: Lee, Yeonjae
name: Seok, Byeongjun
name: Kim, Jaeyoung
name: Park, Byeong Gyu
name: Šmejkal, Libor
name: Kang, Chang-Jong
name: Kim, Changyoung
Publisher: name: arXiv
Year: 2023
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Altermagnetism is a newly identified fundamental class of magnetism with vanishing net magnetization and time-reversal symmetry broken electronic structure. Probing the unusual electronic structure with nonrelativistic spin splitting would be a direct experimental verification of altermagnetic phase. By combining high-quality film growth and $in~situ$ angle-resolved photoemission spectroscopy, we report the electronic structure of an altermagnetic candidate, $α$-MnTe. Temperature dependent study reveals the lifting of Kramers{\textquoteright} degeneracy accompanied by a magnetic phase transition at $T_N=267\text{ K}$ with spin splitting of up to $370\text{ meV}$, providing direct spectroscopic evidence for altermagnetism in MnTe.
Additional file 1 of Hsa_circ_0000497 and hsa_circ_0000918 contributed to peritoneal metastasis of ovarian cancer via ascites
Creators: name: Luo, Ning
name: Sulaiman, Zubaidan
name: Wang, Chunyan
name: Ding, Jinye
name: Chen, Yingying
name: Liu, Biting
name: Cheng, Zhongping
name: Liu, Shupeng
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Table S1. The sequences of primers and siRNAs used for experiments in this study. Table S2. Antibodies used in this study. Table S3. Detailed information for EMT related gene sets. Table S4. Predicted miRNA of candidate circRNAs. Table S5. ORF of candidate circRNAs. Figure S1. CircRNAs differentially expressed in ascitic metastasis of ovarian cancer. Figure S2. Silencing hsa_circ_0000497 and hsa_circ_0000918 inhibit the cell invasion and migration of OVCAR3 cells. Figure S3. mRNAs differentially expressed in ascitic metastasis of ovarian cancer. Figure S4. over-expressing or silencing hsa_circ_0000497 and hsa_circ_0000918 promote or inhibit the cell proliferation ovarian cancer cells
Additional file 6: of Frequency of pathogenic germline variants in BRCA1, BRCA2, PALB2, CHEK2 and TP53 in ductal carcinoma in situ diagnosed in women under the age of 50â years
Creators: name: Petridis, Christos
name: Iteeka Arora
name: Shah, Vandna
name: Megalios, Anargyros
name: Moss, Charlotte
name: Mera, Anca
name: Clifford, Angela
name: Gillett, Cheryl
name: Pinder, Sarah
name: Tomlinson, Ian
name: Roylance, Rebecca
name: Simpson, Michael
name: Sawyer, Elinor
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: BRCA2 pathogenic variants in cases. (DOCX 21 kb)
Noise-induced flow in quasigeostrophic turbulence with bottom friction
Creators: name: Alvarez, A.
name: Hernandez-Garcia, E.
name: Tintore, J.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Chaotic Dynamics (nlin.CD)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Atmospheric and Oceanic Physics (physics.ao-ph)
subject: FOS: Physical sciences

description: Randomly-forced fluid flow in the presence of scale-unselective dissipation develops mean currents following topographic contours. Known mechanisms based on the scale-selective action of damping processes are not at work in this situation. Coarse-graining reveals that the phenomenon is a kind of noise-rectification mechanism, in which lack of detailed balance and the symmetry-breaking provided by topography play an important role.
description: 8 pages Revtex, no figures. Related material at http://www.imedea.uib.es/
Solitons and Almost-Intertwining Matrices
Creators: name: Kasman, Alex
name: Gekhtman, Michael
Publisher: name: arXiv
Year: 2000
Subjects: subject: Mathematical Physics (math-ph)
subject: Quantum Algebra (math.QA)
subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: FOS: Physical sciences
subject: FOS: Mathematics
subject: 37k10

description: We define the set of almost-intertwining matrices to be all triples(X,Y,Z) of n x n matrices for which XZ=YX+T for some rank one matrix T. A surprisingly simple formula is given for tau-functions of the KP hierarchy in terms of such triples. The tau-functions produced in this way include the soliton and vanishing rational solutions. The induced dynamics of the eigenvalues of the matrix X are considered, leading in special cases to the Ruijsenaars-Schneider particle system.
Dipolar Collisions of Ultracold Ground-state Bosonic Molecules
Creators: name: Guo, Mingyang
name: Ye, Xin
name: He, Junyu
name: González-Martínez, Maykel L.
name: Vexiau, Romain
name: Quéméner, Goulven
name: Wang, Dajun
Publisher: name: arXiv
Year: 2018
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: Atomic Physics (physics.atom-ph)
subject: FOS: Physical sciences

description: The dipolar collision between ultracold polar molecules is an important topic both by its own right from the fundamental point of view and for the successful exploration of many-body physics with strong and long-range dipolar interactions. Here, we report the investigation of collisions between ultracold ground-state sodium-rubidium molecules in electric fields with induced electric dipole moments as large as 0.7$\;$D. We observe a step-wise enhancement of losses due to the coupling between different partial waves induced by the increasingly stronger anisotropic dipolar interactions. Varying the temperature of our sample, we find good agreement with theoretical loss rates assuming complex formation as the main loss process. Our results shed new light on the understanding of complex molecular collisions in the presence of strong dipolar interactions and also demonstrate the versatility of modifying molecular interactions with electric fields.
description: 8 pages, 4 figures, PRX in press
Super-Horizon Scale Dynamics of Multi-Scalar Inflation
Creators: name: Sasaki, Misao
name: Tanaka, Takahiro
Publisher: name: arXiv
Year: 1998
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We consider the dynamics of a multi-component scalar field on super-horizon scales in the context of inflationary cosmology. We present a method to solve the perturbation equations on super- horizon scales, i.e., in the long wavelength limit, by using only the knowledge of spatially homogeneous background solutions. In doing so, we clarify the relation between the perturbation equations in the long wavelength limit and the background equations. Then as a natural extension of our formalism, we provide a strategy to study super-horizon scale perturbations beyond the standard linear perturbation theory. Namely we reformulate our method so as to take into account the nonlinear dynamics of the scalar field.
description: 14 pages, typos corrected, to be published in Prog. Theor. Phys. 99 (1998)
Stiphodon atropurpureus
Creators: name: Donaldson, James
name: Maeda, Ken
name: Iida, Midori
name: Kobayashi, Hirozumi
name: Ebner, Brendan C.
name: Tran, Hau Duc
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Perciformes
Gobiidae
Stiphodon
Stiphodon atropurpureus

description: Stiphodon atropurpureus (Herre, 1927):
HNUE-F00297, 6 males (26.6- 34.5 mm SL) and 3 females (29.6-30.8 mm SL), stream 1, 2 Oct. 2018; HNUE-F00298, 2 males (29.0-34.5 mm SL) and 8 females (29.0-35.8 mm SL), stream 2, 3 Oct. 2018; HNUE-F00299, 3 males (20.7-27.0 mm SL) and 6 females (21.7-30.8 mm SL), stream 3, 16 Oct. 2018; HNUEF00300, 1 male (32.0 mm SL) and 1 female (31.0 mm SL), stream 5, 29 Oct. 2018.
description: Published as part of Donaldson, James, Maeda, Ken, Iida, Midori, Kobayashi, Hirozumi, Ebner, Brendan C. & Tran, Hau Duc, 2023, New distributional records of four amphidromous gobies (Gobioidei: Sicydiinae) in continental Vietnam, pp. 467-472 in Cybium 47 (4) on page 468, DOI: 10.26028/cybium/2023-019, http://zenodo.org/record/12713800
Toward a Mechanistic Understanding of Hepatic Insulin Action and Resistance
Creators: Cook, Joshua Robert
Publisher: name: Columbia University
Year: 2014
Subjects: subject: Pathology
subject: Molecular biology
subject: Genetics
subject: FOS: Biological sciences

description: The development of insulin resistance (IR) in the liver is one of the key pathophysiologic events in the development of type 2 diabetes mellitus, but most patients do not become uniformly resistant to the hepatic actions of insulin. Although insulin loses its ability to blunt glucose production, it largely retains its capacity to drive lipogenesis. This "selective IR" results in the characteristic hyperglycemia and dyslipidemia of type 2 diabetes. In this thesis, we take two approaches to better understand the mechanisms underlying selective IR. First, the compensatory chronic hyperinsulinemia (CHI) of insulin resistance downregulates levels of the insulin receptor (InsR). We have therefore modeled CHI in primary hepatocytes to demonstrate that the reduction in InsR number results in insufficient signaling capacity to halt glucose production while still leaving enough residual signaling capacity to promote lipogenesis. That is, the two processes are inherently differentially sensitive to insulin. Second, we hypothesize that FoxO1, a key insulin-inhibited transcription factor, coordinately regulates both hepatic glucose and lipid homeostasis. We have developed a transgenic mouse model heterozygous for a knocked-in allele of DNA binding-deficient FoxO1 and have proceeded to dissect the mechanisms by which FoxO1 differentially regulates glucose and lipid handling. We found that while the former requires FoxO1 to bind to its consensus sequences in target-gene promoters, the latter proceeds via a co-regulatory action of FoxO1. Taken together, these findings reveal novel connections between the glucose and lipid "arms" of the insulin-signaling pathway and how they may go awry in the run-up to diabetes.
A Quantum-Inspired Method for Three-Dimensional Ligand-Based Virtual Screening
Creators: name: Hernandez, Maritza
name: Gan, Guo Liang
name: Linvill, Kirby
name: Dukatz, Carl
name: Feng, Jun
name: Bhisetti, Govinda
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantitative Methods (q-bio.QM)
subject: Quantum Physics (quant-ph)
subject: FOS: Biological sciences
subject: FOS: Physical sciences

description: Measuring similarity between molecules is an important part of virtual screening (VS) experiments deployed during the early stages of drug discovery. Most widely used methods for evaluating the similarity of molecules use molecular fingerprints to encode structural information. While similarity methods using fingerprint encodings are efficient, they do not consider all the relevant aspects of molecular structure. In this paper, we describe a quantum-inspired graph-based molecular similarity (GMS) method for ligand-based VS. The GMS method is formulated as a quadratic unconstrained binary optimization problem that can be solved using a quantum annealer, providing the opportunity to take advantage of this nascent and potentially groundbreaking technology. In this study, we consider various features relevant to ligand-based VS, such as pharmacophore features and three-dimensional atomic coordinates, and include them in the GMS method. We evaluate this approach on various datasets from the DUD_LIB_VS_1.0 library. Our results show that using three-dimensional atomic coordinates as features for comparison yields higher early enrichment values. In addition, we evaluate the performance of the GMS method against conventional fingerprint approaches. The results demonstrate that the GMS method outperforms fingerprint methods for most of the datasets, presenting a new alternative in ligand-based VS with the potential for future enhancement.
description: 45 pages, 20 figures. It includes Supporting Information material
Post Occupancy Evaluation of Aquatic Ecosystem Research Laboratory
Creators: name: Tan, Shen
name: Lei, Yi Zhong
name: Winardi, Alexander
Publisher: name: The University of British Columbia
Year: 2014

description: This Post Occupancy Evaluation was performed as a requirement for the completion of MECH 550G/CIVL 598C. The purpose of this POE is to deliver a detailed report in order to provide UBC Campus Sustainability Initiatives with recommendations for improving the performance of the Aquatic Ecosystem Research Laboratory. Based on AERL’s trouble log history, we focused on evaluating the open-plan and private offices. The data collected consisted of measurements of the physical environment (thermal, acoustic, air quality, and lighting) at representative locations, a questionnaire administered to all occupants about satisfaction to current indoor environment, and monthly utility data supplied by the building owners. Physical and questionnaire data were collected in March, 2012. Key findings and recommendations are as follows: •Water consumption has always been above the design goal and MNECB baseline. •Energy consumption is below the MNECB baseline but further improvements are still needed to get closer to the design goal. Windows glazing can be replaced with ones that have higher R value. •The open-plan offices have excellent speech intelligibility but poor speech privacy. Furthermore, noises from the atrium propagate easily into the offices. Installing more acoustic baffles within the atrium and open-plan offices can minimize the discomfort. •The CO₂ level within the open-plan and private offices were well below the 1075 ppm limit set by ASHRAE 62 – 2007 •There is insufficient illumination within the open-plan offices. Higher wattage light bulbs or LED lights may be used on replace existing light bulbs. •The current control algorithm for space heating does not promote optimum heat transfer rate into the offices. Flow rate of hot water need to be controlled by automatic flow control valves instead of by manually controlled valves. Disclaimer: “UBC SEEDS provides students with the opportunity to share the findings of their studies, as well as their opinions, conclusions and recommendations with the UBC community. The reader should bear in mind that this is a student project/report and is not an official document of UBC. Furthermore readers should bear in mind that these reports may not reflect the current status of activities at UBC. We urge you to contact the research persons mentioned in a report or the SEEDS Coordinator about the current status of the subject matter of a project/report.”
Additional file 1: of Evaluation of two SpO2 alarm strategies during automated FiO2 control in the NICU: a randomized crossover study
Creators: name: Malgorzata Warakomska
name: Bachman, Thomas
name: Wilinska, Maria
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Science Policy

description: CONSORT 2010 checklist of information to include when reporting a randomised trial*. (DOCX 155 kb)
Self-organization in nonlinear wave turbulence
Creators: name: Jordan, Richard
name: Josserand, Christophe
Publisher: name: arXiv
Year: 1999
Subjects: subject: Chaotic Dynamics (nlin.CD)
subject: FOS: Physical sciences

description: We present a statistical equilibrium model of self-organization in a class of focusing, nonintegrable nonlinear Schrodinger (NLS) equations. The theory predicts that the asymptotic-time behavior of the NLS system is characterized by the formation and persistence ofa large-scale coherent solitary wave, which minimizes the Hamiltonian given the conserved particle number,coupled with small-scale random fluctuations, or radiation. The fluctuations account for the difference between the conserved value of the Hamiltonian and the Hamiltonian of the coherent state. The predictions of the statistical theory are tested against the results of direct numerical simulations of NLS, and excellent qualitative and quantitative agreement is demonstrated. In addition, a careful inspection of the numerical simulations reveals interesting features of the transitory dynamics leading up to the to the long-time statistical equilibrium state starting from a given initial condition. As time increases, the system investigates smaller and smaller scales, and it appears that at a given intermediate time after the coalescense of the soliton structures has ended, the system is nearly in statistical equilibrium over the modes that it has investigated up to that time.
description: 17 pages, 8 figures
Proton-transfer Ferroelectricity / Multiferroicity in Rutile Oxyhydroxides
Creators: name: Wu, Menghao
name: Duan, Tianci
name: Lu, Chengliang
name: Fu, Huahua
name: Dong, Shuai
name: Liu, Junming
Publisher: name: arXiv
Year: 2018
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Oxyhydroxide minerals like FeOOH have been a research focus in geology for studying the Earth interior, and also in chemistry for studying oxygen electrocatalysis activity. In this paper we provide first-principles evidence of a new class of ferroelectrics or multiferroics among them:GaOOH,InOOH,CrOOH,FeOOH, which are earth-abundant minerals and have been experimentally verified to possess distorted rutile structures, are ferroelectric with considerable polarizations(up to 24 muC/cm2) and piezoelectric coefficients. Their atomic-thick layer may possess vertical polarization robust against depolarizing field due to the formation of O-H O bonds that can hardly be symmetrized. Moreover,CrOOH (guyanaite) is revealed to be a combination of high-Tc in-plane type-I multiferroics and vertical type-II multiferroics, which is strain-tunable and may render a desirable coupling between magnetism and ferroelectricity. Supported by experimental evidence on reversible conversion between metal oxyhydroxides and dioxides and their nice lattice match that renders convenient epitaxial growth, heterostructure composed of oxyhydroxides and prevalent metal dioxides (e.g. TiO2, SnO2 and CrO2) may be constructed for various applications like ferroelectric field-effect transistors and multiferroic tunneling junctions.