cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Tuponia (Tuponia) arcufera Reuter 1879
Creators: name: Linnavuori, Rauno E.
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Miridae
Tuponia
Tuponia arcufera

description: Tuponia (Tuponia) arcufera Reuter, 1879
 Material examined. Many specimens: GILAN: Ganjeh, 14.v.-13.vi.1995; Lowshan, 23.v.1995; Parudbar, 25.- 26.vi.2004; Tutkabon – Rudbar, 10.-12.v.2001, 6.-8.vi.2002. ARDABIL: Firuzabad, 28.vii.2004; Khalkhal – Kivi, 4.viii.1996, 8.-9.vii.2002. ZANJAN: Abbar, 12.-14.v.2001; Gilankesh, 15 km NW of Gilvan, 26.-27.vi.2004. TEHRAN: Gachsar, 13.vii.2002. MAZANDARAN: Chalus, 16.-17.vii.2002; Hassan Abad, 15.-16.vii.2002.
 Comments. On Tamarix. Pontomediterranean, extending to Central Asia.
description: Published as part of Linnavuori, Rauno E., 2007, Studies on the Miridae (Heteroptera) of Gilan and the adjacent provinces in northern Iran. II. List of species, pp. 17-56 in Acta Entomologica Musei Nationalis Pragae 47 on page 54, DOI: 10.5281/zenodo.5328235
title: Healthy Nutrition in Chinese Middle Schools: An Ecological Approach
Creators: name: Wang, Dongxu
Publisher: name: Griffith University
Year: 2014
Subjects: subject: Nutrition, China
subject: Nutrition education, China
subject: Healthy nutrition
subject: Type 2 diadetes
subject: Adolescent health
subject: Adolescent nutrition, China

description: Good nutrition is vital for adolescents, because it supports their growth and helps them to become healthy adults. Under-nutrition delays adolescents’ physical and mental growth and maturation, and reduces adolescents’ learning and working capacity. Meanwhile, over-nutrition in adolescence, together with an unhealthy lifestyle, can lead to overweight and obesity, which are risk factors for many chronic diseases such as coronary heart disease, type 2 diabetes, and stroke. However, nutrition problems in adolescents are both common and serious in developing countries, especially in the rural areas of these countries. For example, both nutritional deficiencies and over-nutrition in adolescents are significant and growing problems in many parts of China. Intervention for adolescents can result in positive changes to their eating behaviours and improvements to their future health. Promoting nutrition for adolescents, accordingly, plays a crucial role in safeguarding a healthy life for individuals, and therefore this study focused on the promotion of good nutrition and healthy dietary intake among adolescents in rural areas of China. In view of the complexity and difficulty of achieving behaviour change, and the strong and sustainable effect that the health-promoting schools (HPS) framework, underpinned by ecological approaches, can make in behaviour change, this study applied both an ecological approach and a HPS framework as theoretical bases. These bases provided the guidance for promoting healthy dietary intake and nutrition in a “total school-based environment”, for the “total population” of the school, not only for students, but also for parents and school staff in rural Chinese middle schools.
Tetrapogon tenellus Chiov., Annuario Reale Ist. Bot. Roma
Creators: name: Prunera-Olivé, Joan
name: Vorontsova, Maria S.
name: Williams, Emma V.
name: Mollel, Neduvoto P.
name: Hemp, Andreas
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Poales
Poaceae
Tetrapogon
Tetrapogon tenellus

description: Tetrapogon tenellus (J.Koenig ex Roxb.) Chiov., Annuario Reale Ist. Bot. Roma 8: 352 (1908 publ. 1907).
 Distribution: Eritrea to S. Africa, Arabian Pen., Indian Subcontinent
 Specimens: MOSHI Kisangiro, Peterson, P. 24191 (K); Kiuo Hill, Hemp, A. 1732 (NHT, UBT).
description: Published as part of Prunera-Olivé, Joan, Vorontsova, Maria S., Williams, Emma V., Mollel, Neduvoto P. & Hemp, Andreas, 2021, Checklist of Kilimanjaro grasses shows that both plot and herbarium methods are necessary to record diversity, pp. 201-244 in Phytotaxa 501 (2) on page 242, DOI: 10.11646/phytotaxa.501.2.1, http://zenodo.org/record/5424816
Tuponia (Tuponia) mixticolor
Creators: name: Linnavuori, Rauno E.
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Miridae
Tuponia
Tuponia mixticolor

description: Tuponia (Tuponia) mixticolor (A. Costa, 1862)
 Material examined. GILAN: Dasht-e-Veel, 2 specimens, 6.-8.vi.2002; Ganjeh, several specimens, 24.v.-28.vi.1995; Tutkabon – Rudbar, 1 specimen, 6.-8.vi.2002. ZANJAN: Mamalan, 4 specimens, 4.-6.vi.2002.
 Comments. On Tamarix. Holomediterranean.
description: Published as part of Linnavuori, Rauno E., 2007, Studies on the Miridae (Heteroptera) of Gilan and the adjacent provinces in northern Iran. II. List of species, pp. 17-56 in Acta Entomologica Musei Nationalis Pragae 47 on page 55, DOI: 10.5281/zenodo.5328235
Dawn of the dark: unified dark sectors and the EDGES Cosmic Dawn 21-cm signal
Creators: name: Yang, Weiqiang
name: Pan, Supriya
name: Vagnozzi, Sunny
name: Di Valentino, Eleonora
name: Mota, David F.
name: Capozziello, Salvatore
Publisher: name: arXiv
Year: 2019
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: While the origin and composition of dark matter and dark energy remains unknown, it is possible that they might represent two manifestations of a single entity, as occurring in unified dark sector models. On the other hand, advances in our understanding of the dark sector of the Universe might arise from Cosmic Dawn, the epoch when the first stars formed. In particular, the first detection of the global 21-cm absorption signal at Cosmic Dawn from the EDGES experiment opens up a new arena wherein to test models of dark matter and dark energy. Here, we consider generalized and modified Chaplygin gas models as candidate unified dark sector models. We first constrain these models against Cosmic Microwave Background data from the \textit{Planck} satellite, before exploring how the inclusion of the global 21-cm signal measured by EDGES can improve limits on the model parameters, finding that the uncertainties on the parameters of the Chaplygin gas models can be reduced by a factor between $1.5$ and $10$. We also find that within the generalized Chaplygin gas model, the tension between the CMB and local determinations of the Hubble constant $H_0$ is reduced from $\approx 4σ$ to $\approx 1.3σ$. In conclusion, we find that the global 21-cm signal at Cosmic Dawn can provide an extraordinary window onto the physics of unified dark sectors.
description: 18 pages, 3 Tables, 2 figures; version accepted for publication in JCAP
Additional file 5: of C3aR signaling and gliosis in response to neurodevelopmental damage in the cerebellum
Creators: name: Young, Kevin
name: Keqin Yan
name: Picketts, David
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Growth curves of Smarca5 cKO, C3aR KO, and dKO mice in comparison to control littermates. Number of animals in each group is shown on the right of each graph; error bars represent the SEM. (DOCX 80 kb)
Glaucopterum kareli Wagner 1963
Creators: name: Linnavuori, Rauno E.
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Miridae
Glaucopterum
Glaucopterum kareli

description: Glaucopterum kareli Wagner, 1963
 Material examined. GILAN: Manjil, 1 specimen, 8.-10.v.2001. TEHRAN: Shahrestenak, several specimens, 10.- 12.vii.1995.
 Comments. On Elaeagnus angustifolius. Irano-Turanian.
description: Published as part of Linnavuori, Rauno E., 2007, Studies on the Miridae (Heteroptera) of Gilan and the adjacent provinces in northern Iran. II. List of species, pp. 17-56 in Acta Entomologica Musei Nationalis Pragae 47 on page 47, DOI: 10.5281/zenodo.5328235
title: 03_0394
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
Synthetic antimicrobial and LPS-neutralising peptides suppress inflammatory and immune responses in skin cells and promote keratinocyte migration
Creators: name: Pfalzgraff, Anja
name: Heinbockel, Lena
name: Su, Qi
name: Gutsmann, Thomas
name: Brandenburg, Klaus
name: Weindl, Günther
Publisher: name: Freie Universität Berlin
Year: 2016
Subjects: subject: Antimicrobial responses
subject: Antimicrobials
subject: Inflammation
subject: Peptides
subject: Toll-like receptors
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::615 Pharmakologie, Therapeutik

description: The stagnation in the development of new antibiotics and the concomitant high increase of resistant bacteria emphasize the urgent need for new therapeutic options. Antimicrobial peptides are promising agents for the treatment of bacterial infections and recent studies indicate that Pep19-2.5, a synthetic anti-lipopolysaccharide (LPS) peptide (SALP), efficiently neutralises pathogenicity factors of Gram-negative (LPS) and Gram-positive (lipoprotein/-peptide, LP) bacteria and protects against sepsis. Here, we investigated the potential of Pep19-2.5 and the structurally related compound Pep19-4LF for their therapeutic application in bacterial skin infections. SALPs inhibited LP-induced phosphorylation of NF-κB p65 and p38 MAPK and reduced cytokine release and gene expression in primary human keratinocytes and dermal fibroblasts. In LPS-stimulated human monocyte-derived dendritic cells and Langerhans-like cells, the peptides blocked IL-6 secretion, downregulated expression of maturation markers and inhibited dendritic cell migration. Both SALPs showed a low cytotoxicity in all investigated cell types. Furthermore, SALPs markedly promoted cell migration via EGFR transactivation and ERK1/2 phosphorylation and accelerated artificial wound closure in keratinocytes. Peptide-induced keratinocyte migration was mediated by purinergic receptors and metalloproteases. In contrast, SALPs did not affect proliferation of keratinocytes. Conclusively, our data suggest a novel therapeutic target for the treatment of patients with acute and chronic skin infections.
Cosmic shear statistics in the Suprime-Cam 2.1 sq deg field: Constraints on Omega_m and sigma_8
Creators: name: Hamana, T.
name: Miyazaki, S.
name: Shimasaku, K.
name: Furusawa, H.
name: Doi, M.
name: Hamabe, M.
name: Imi, K.
name: Kimura, M.
name: Komiyama, Y.
name: Nakata, F.
name: Okada, N.
name: Okamura, S.
name: Ouchi, M.
name: Sekiguchi, M.
name: Yagi, M.
name: Yasuda, N.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present measurements of the cosmic shear correlation in the shapes of galaxies in the Suprime-Cam 2.1 deg^2 R_c-band imaging data. As an estimator of the shear correlation originated from the gravitational lensing, we adopt the aperture mass variance. We detect a non-zero E mode variance on scales between 2 and 40arcmin. We also detect a small but non-zero B mode variance on scales larger than 5arcmin. We compare the measured E mode variance to the model predictions in CDM cosmologies using maximum likelihood analysis. A four-dimensional space is explored, which examines sigma_8, Omega_m, Gamma and zs (a mean redshift of galaxies). We include three possible sources of error: statistical noise, the cosmic variance estimated using numerical experiments, and a residual systematic effect estimated from the B mode variance. We derive joint constraints on two parameters by marginalizing over the two remaining parameters. We obtain an upper limit of Gamma<0.5 for zs>0.9 (68% confidence). For a prior Gamma\in[0.1,0.4] and zs\in[0.6,1.4], we find sigma_8=(0.50_{-0.16}^{+0.35})Omega_m^{-0.37} for flat cosmologies and sigma_8=(0.51_{-0.16}^{+0.29})Omega_m^{-0.34}$ for open cosmologies (95% confidence). If we take the currently popular LCDM model, we obtain a one-dimensional confidence interval on sigma_8 for the 95.4% level, 0.62
description: 12 pages, 12 figures, accepted for publication in ApJ
Additional file 2 of A proactive genotype-to-patient-phenotype map for cystathionine beta-synthase
Creators: name: Sun, Song
name: Weile, Jochen
name: Verby, Marta
name: Wu, Yingzhou
name: Wang, Yang
name: Cote, Atina
name: Fotiadou, Iosifina
name: Kitaygorodsky, Julia
name: Vidal, Marc
name: Rine, Jasper
name: Ješina, Pavel
name: Kožich, Viktor
name: Roth, Frederick
Publisher: name: figshare
Year: 2020
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Developmental Biology
subject: Computational Biology

description: Additional file 2: Contains Supplementary Figures S1-S21.
The Cosmic Infrared Background at 1.25 microns and 2.2 microns using DIRBE and 2MASS: a contribution not due to galaxies ?
Creators: name: Cambresy, L.
name: Reach, W. T.
name: Beichman, C. A.
name: Jarrett, T. H.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Using the 2MASS 2nd Incremental Data Release and the Zodiacal-Subtracted Mission Average maps of COBE/DIRBE, we estimate the cosmic background in the J (1.25 micron) and K (2.2 microns) bands using selected areas representing 550 square degrees of sky. We find a J background of 22.9 \pm 7.0 kJy/sr (54.0 \pm 16.8 nW/m2/sr) and a K background of 20.4 \pm 4.9 kJy/sr (27.8 \pm 6.7 nW/m2/sr). This large scale study shows that the main uncertainty comes from the residual zodiacal emission. The cosmic background we obtain is significantly higher than integrated galaxy counts (3.6 \pm 0.8 kJy/sr and 5.3 \pm 1.2 kJy/sr for J and K, respectively), suggesting either an increase of the galaxy luminosity function for magnitudes fainter than 30 or the existence of another contribution to the cosmic background from primeval stars, black holes, or relic particle decay.
description: 20 pages, 6 figures, accepted in ApJ
Themeda triandra Forssk., Fl.
Creators: name: Prunera-Olivé, Joan
name: Vorontsova, Maria S.
name: Williams, Emma V.
name: Mollel, Neduvoto P.
name: Hemp, Andreas
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Poales
Poaceae
Themeda
Themeda triandra

description: Themeda triandra Forssk., Fl. Aegypt.-Arab.: 178 (1775).
 Distribution: Africa, Trop. & Subtrop. Asia to Australia
 Specimens: MOSHI Engare Nairobi, Greenway, P.J. 6700 (K, NH); Engare Nairobi, Moss, M. 13 (K); Holili, Hemp, A. 1868 (NHT, UBT); Lake Chala, Hemp, A. 680 (UBT); Lolorai Hill, Grimshaw, J.M. 931213 (K); Marangu, Schlieben, H.J. 4705 (K, NH); Marangu, Volkens, G. 1481 (E, K); Moshi, Haarer, A.E. 755 (K); Moshi, Hitchcock, A.S. 24583 (K); Moshi, Shantz, H.L. 789 (K); s. loc., Endlich, R. 32 (NH); s. loc., Milne, G. 13 (NH); s. loc., Schlieben, H.J. 4705B (NH); s. loc., Volkens, G. 303 (K); Simba Farm, Bigger, M. 2356 (K).
description: Published as part of Prunera-Olivé, Joan, Vorontsova, Maria S., Williams, Emma V., Mollel, Neduvoto P. & Hemp, Andreas, 2021, Checklist of Kilimanjaro grasses shows that both plot and herbarium methods are necessary to record diversity, pp. 201-244 in Phytotaxa 501 (2) on page 242, DOI: 10.11646/phytotaxa.501.2.1, http://zenodo.org/record/5424816
Policy-relevant Assessment Method of Socio-Economic Impacts of Floods: an Italian Case Study
Creators: name: Carrera, Lorenzo
name: Eboli, Fabio
name: Farinosi, Fabio
name: Maziotis, Alexandros
name: Mysiak, Jaroslav
name: Standardi, Gabriele
Publisher: name: Freie Universität Berlin
Year: 2013
Subjects: subject: Risk Assessment
subject: Flood
subject: Economic Impacts
subject: Social Impact
subject: Impact Assessment
subject: 300 Sozialwissenschaften::320 Politikwissenschaft

description: This paper estimates the direct and indirect socio-economic impacts of the 2000 flood that took place in the Po river basin (Italy) using a combination of Computable General Equilibrium (CGE) model and Spatial and Multi-Criteria Analysis. A risk map for the whole basin is generated as a function of hazard, exposure and vulnerability. The indirect economic losses are assessed using the CGE model, whereas the direct social and economic impacts are estimated with spatial analysis tools combined with Multi-Criteria Analysis. The social impact is expressed as a function of physical characteristics of the extreme event, social vulnerability and adaptive capacity. The results indicate that the highest risk areas are located in the mountainous and in the most populated portions of the basin, which are consistent with the high values of hazard and vulnerability. Considerably economic damages occurred to the critical infrastructure of all the sectors with the industry/commercial sector having the biggest impact. A negative variation in the country and industry Gross Domestic Product (GDP) was also reported. Our study is of great interest to those who are interested in estimating the economic impact of flood events. It can also assist decision makers in pinpointing factors that threaten the sustainability and stability of a risk-prone area and more specifically, to help them understand how to reduce social vulnerability to flood events.
Additional file 3: of C3aR signaling and gliosis in response to neurodevelopmental damage in the cerebellum
Creators: name: Young, Kevin
name: Keqin Yan
name: Picketts, David
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Normalized GFAP expression in Snf2h cKO mice. Quantification of GFAP expression of immunoblot in Fig.Â 1c. Expression of GFAP was first normalized to the actin loading control and then to WT sedentary mice. Running induced a 1.2-fold increase in GFAP levels in WT mice. However, the removal of Snf2h resulted in an 8.4-fold increase in GFAP expression that was slightly attenuated (6.0-fold increase) when a running wheel was provided. (DOCX 64 kb)
title: Explanation as First-Class Citizen: Methods and Applications
Creators: name: Phan, Thanh Cong
Publisher: name: Griffith University
Year: 2023
Subjects: subject: Explainable AI
subject: wildfire detection
subject: rumour detection
subject: fraud detection

description: Artificial intelligence (AI) in general and deep learning in particular are directly or indirectly take the roles of human users in decision-making tasks, such as autonomous vehicles, fraud detection, recommender systems, and healthcare diagnostics. While they gradually excel in predictive performance, they lack of explainability for users to understand, trust, reuse, and innovate on the algorithmic output. In this work, we explore the explainable AI paradigm and study how to generate and generalize explanations for AI models. To implement the explainable AI paradigm, the broad research methodologies have been adopted. Many recent works try to open such black-boxes by developing alternative deep learning models with the same prediction power and high explainability [GCH+18]. However, such trade-off between predictability and explainability cannot be easily overcome, especially with the scale of Big Data. Moreover, changing the models in production might be costly and lead to unexpected consequences. Although model-agnostic explanations (aka post-doc explanations) exist, they focus on the characteristics of the models. Understanding algorithms is not enough, as bias mostly exists in data. To truly understand the problem, one needs to become one with the data. Moreover, data-based explanations also help user to trust the system more, come up with new ideas, and improves the AI models themselves. In this work, we go beyond the state-of-the-art and the explainability-accuracy trade-off by nurturing explanations as first-class citizens, which align with how human users perceive real-world phenomena. While our methodology can be applied to many domains, in this thesis, we focus on three new types of explanations, event-based explanation with a case study of bushfire explanation, graph-based explanation with a case study of rumour detection, and example-based with a case study in fraud detection.
Additional file 1 of PCIP-seq: simultaneous sequencing of integrated viral genomes and their insertion sites with long reads
Creators: name: Artesi, Maria
name: Hahaut, Vincent
name: Cole, Basiel
name: Lambrechts, Laurens
name: Ashrafi, Fereshteh
name: Marçais, Ambroise
name: Hermine, Olivier
name: Griebel, Philip
name: Arsic, Natasa
name: van der Meer, Frank
name: Burny, Arsène
name: Bron, Dominique
name: Bianchi, Elettra
name: Delvenne, Philippe
name: Bours, Vincent
name: Charlier, Carole
name: Georges, Michel
name: Vandekerckhove, Linos
name: Van den Broeke, Anne
name: Durkin, Keith
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: Evolutionary Biology
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: Additional file 1: Figure S1. Clonality pie charts in sheep and cattle. Figure S2. SNP validation by clone specific PCR. Figure S3. Distinguishing between real SNPs and technical artifacts. Figure S4. Hypermutation in BLV proviruses. Figure S5. Validation of BLV structural variants by clone specific PCR. Figure S6. SNPs and recombination in the HIV-1 cell line U1. Figure S7. Estimation of the efficiency of PCIP-seq. Figure S8. Examples of HIV-1 proviruses from patient 02006. Figure S9. Insertion site of ERV causing cholesterol deficiency in Holstein cattle. Figure S10. Validated BERVK2 identified via PCIP-seq. Figure S11. ERV BTA3_115.3 LTRs match APOB (BTA11_77.9) ERV. Figure S12. Validated enJSRV. Table S1. Comparing PCIP-seq to ligation mediated PCR and Illumina sequencing. Table S2. SNPs identified in each sample. Table S3. BLV structural variants identified by PCIP-seq. Table S4. HIV-1 patients’ clinical information. Table S5. BERVK2s identified in cattle by PCIP-seq. Table S6. enJSRVs identified in sheep by PCIP-seq. Table S7. HPV integration sites identified in patients HPV18_PX and HPV18_PY. Table S8. PCIP-seq efficiency estimation in BLV. Supplementary note 1. Rationale behind the use of CRISPR-cas9 to cleave circular DNA. Supplementary note 2. Effect of coverage on SNP calling. Supplementary Methods. Supplementary References.
X-ray emission from a merger remnant, NGC 7252,the "Atoms-for-Peace" galaxy
Creators: name: Awaki, Hisamitsu
name: Matsumoto, Hironori
name: Tomida, Hiroshi
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We observed a nearby merger remnant NGC 7252 with the X-ray satellite ASCA, and detected X-ray emission with the X-ray flux of (1.8+/-0.3)E-13 ergs/s/cm/cm in the 0.5 - 10 keV band. This corresponds to the X-ray luminosity of 8.1E40 ergs/s. The X-ray emission is well described with a two-component model: a soft component with kT =0.72+/-0.13 keV and a hard component with kT > 5.1 keV. Although NGC 7252 is referred to as a dynamically young protoelliptical, the 0.5 - 4 keV luminosity of the soft component is about 2E40 ergs/s, which is low for an early-type galaxy. The ratio of L_X/L_FIR suggests that the soft component originated from the hot gas due to star formation. Its low luminosity can be explained by the gas ejection from the galaxy as galaxy winds. Our observation reveals the existence of hard X-ray emission with the 2 - 10 keV luminosity of 5.6E40 ergs/s. This may indicate the existence of nuclear activity or intermediate-mass black hole in NGC 7252.
description: 9 pages including 3 figures and 1 table, accepted by The Astrophysical Journal
Nonlinear flavor development of a two-dimensional neutrino gas
Creators: name: Martin, Joshua D.
name: Abbar, Sajad
name: Duan, Huaiyu
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We present a numerical survey of the nonlinear flavor development of dense neutrino gases. This study is based on the stationary, two-dimensional ($x$ and $z$), two-beam, monochromatic neutrino line model with a periodic boundary condition along the $x$ direction. Similar to a previous work, we find that small-scale flavor structures can develop in a neutrino gas even if the physical conditions are nearly homogeneous along the $x$ axis initially. The power diffusion from the large-scale to small-scale structures increases with the neutrino density and helps to establish a semi-exponential dependence of the magnitudes of the Fourier moments on the corresponding wave numbers. The overall flavor conversion probabilities in the neutrino gases with small initial sinusoidal perturbations reach certain equilibrium values at large distances which are mainly determined by the neutrino-antineutrino asymmetry. Similar phenomena also exist in a neutrino gas with a localized initial perturbation, albeit only inside an expanding flavor conversion region. Our work suggests that a statistical treatment may be possible for the collective flavor oscillations of a dense neutrino gas in a multi-dimensional environment.
description: 10 pages, 5 figures
Long-term X-ray variability of quasars in the Lockman Hole field observed with ROSAT
Creators: name: Ezoe, Yu-ichiro
name: Iyomoto, Naoko
name: Makishima, Kazuo
name: Hasinger, Gunter
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: An improved method is utilized to estimate the X-ray power spectral densities (PSD) and the variation time scales of three quasars in the Lockman Hole field. Five archival ROSAT PSPC data covering two year range are analyzed. To estimate PSD from sparse and unevenly-sampled lightcurves, a forward-method approach with extensive Monte-Carlo simulations is adopted. A broken power-law type PSD with a constant Poisson noise component is assumed with a break frequency $f_{\rm b}$. Then, assuming the PSD slope $α$ as $-2
description: 8 pages, 3 figures, accepted in PASJ
Plagiognathus (Plagiognathus) fulvipennis
Creators: name: Linnavuori, Rauno E.
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Miridae
Plagiognathus
Plagiognathus fulvipennis

description: Plagiognathus (Plagiognathus) fulvipennis (Kirschbaum, 1856)
 Material examined. Numerous specimens: GILAN: Darreh Dasht, 27.v.-20.vi.1995; Deylaman, 9.v.-24.vi.1995; Lounak, 30.v.-24.vi.1995; Masuleh, 6.-26.vi.2005. ARDABIL: 10 km W of Khalkhal, 8.-9.vii.2002; Khemes – Kolur, 27.-29.viii.2002; 25 km E of Kivi, 7.-9.vii.2002. TEHRAN: Azad Bar, 10.vii.1995.
 Comments. In steppes and meadows in hills. On Asteraceae (Achillea, Heteropappus, Centaurea). Pontomediterranean.
description: Published as part of Linnavuori, Rauno E., 2007, Studies on the Miridae (Heteroptera) of Gilan and the adjacent provinces in northern Iran. II. List of species, pp. 17-56 in Acta Entomologica Musei Nationalis Pragae 47 on page 50, DOI: 10.5281/zenodo.5328235
First results from the Isaac Newton Telescope Wide Angle Survey: The z>5 quasar survey
Creators: name: Sharp, R. G.
name: McMahon, R. G.
name: Irwin, M. J.
name: Hodgkin, S. T.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We report the first results of an observational program designed to determine the luminosity density of high redshift quasars (z > 5 quasars) using deep multi-colour CCD data. We report the discovery and spectra of 3 i < 21.5 high redshift (z > 4.4) quasars, including one with z > 5. At z=5.17, this is the fourth highest redshift quasar currently published. Using these preliminary results we derive an estimate of the M \rm_B < - 25.0 (M \rm_{AB1450} < - 24.5) quasar space density in the redshift range 4.8 < z < 5.8 of 3.6 \pm2.5\times 10^{-8} \Mpc ^{-3} . When completed the survey will provide a firm constraint on the contribution to the ionizing UV background in the redshift range 4.5 - 5.5 from quasars by determining the faint end slope of the quasar luminosity function. The survey uses imaging data taken with the 2.5m Isaac Newton Telescope as part of the Public Isaac Newton Group Wide Field Survey (WFS). This initial sample of objects is taken from two fields of effective area $\sim 12.5deg ^2$ from the final $\sim 100deg ^2$.
description: 5 pages, 5 figures, accepted for publication MNRAS. Note: Revised version with quasar space density estimate and survey completeness information
Additional file 4: of C3aR signaling and gliosis in response to neurodevelopmental damage in the cerebellum
Creators: name: Young, Kevin
name: Keqin Yan
name: Picketts, David
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Neuroscience
subject: Physiology
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Expression of C3aR and gC1qR on microglia and macrophages. (A) Labeling for both receptors was observed on macrophages (arrows) in the subarachnoid space of the cerebellum. The expression of each was heterogenous, with different macrophages labeling more strongly for one or the other. (B) In Smarca5 mutants bred on a C57BL/6 background, C3aR labeling was more consistently labeled on microglial cells (thin open arrows) in addition to the macrophages (thicker arrows), though this microglial labeling was also consistently weaker than the macrophage labeling. Scale bar = 50 Îźm, and applies to all images. (DOCX 120 kb)
Is educational policy a matter of doxa ? Overcoming the fact/value distinction in educational policy research
Creators: name: Christodoulou, Michael
Publisher: name: Academia
Year: 2018
Subjects: Policy research, fact/value distinction, epistemology, phronetic rationality, realism

description: My aim in this theoretical article is to present an argument on the epistemological grounds of policy sociology. In particular, I have structured my argument as follows: first, I present the three most used epistemological traditions within which educational policy is implemented and I highlight their basic deficiencies. The goal of this presentation is to show how the reasons why the aims of policy researchers working within these traditions have failed are related to their assumptions regarding the fact/value distinction. Secondly, I describe in detail the arguments of Hilary Putnam and Richard Bernstein and I identify how they overcome the impasse this distinction leads to. Finally, I sketch three regulative principles stemming from their arguments, which could provide a fruitful epistemological context for deliberating about policy values, theorizing about educational policy problems and implementing policy research.
description: Academia, No 11 (2018)
Drimys amplexicaulis P. Parm.
Creators: name: Turner, I. M.
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Canellales
Winteraceae
Drimys
Drimys amplexicaulis

description: 1. Drimys amplexicaulis Vieill. ex P.Parm.
Bulletin scientifique de la France et de la Belgique 27: 231, 308, 330, pl. X, fig. 34 (1896).
— Type: New Caledonia, [ad montes prope Wagap, in sylvis humide, 1861-1867,] E. Vieillard 2280 (holo-, P [P00062020]; iso-, P [×7]).
Zygogynum amplexicaule (Vieill. ex P.Parm.) Vink: Blumea 31: 53 (1985) (Vink 1990, 1993).
REMARKS
The holotype is a herbarium sheet with a collection label from the Phytologic Museum of Melbourne labelled “ Drimys amplexicaulis, Vieill. New Caledonia Vieillard No. 2280”. The Paris herbarium has seven other sheets with the same Vieillard number but none of these arrived via Melbourne.
description: Published as part of Turner, I. M., 2012, The taxa described by Paul Évariste Parmentier in Histoire des Magnoliacées, pp. 237-249 in Adansonia (3) (3) 34 (2) on page 239, DOI: 10.5252/a2012n2a3, http://zenodo.org/record/5205948
Additional file 1 of Systemic therapy of MSCs in bone regeneration: a systematic review and meta-analysis
Creators: name: Fu, Jingfei
name: Wang, Yanxue
name: Jiang, Yiyang
name: Du, Juan
name: Xu, Junji
name: Liu, Yi
Publisher: name: figshare
Year: 2021
Subjects: subject: Space Science
subject: Medicine
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Hematology

description: Additional file 1. (DOCX 18 kb)
What is Left of Bolsonarism: The Many Faces of the Brazilian Far-Right
Creators: name: Mattia Bottino
Publisher: name: Eurac Research
Year: 2024

description: Brazil has been home to some of the largest mass political movements in the Western Hemisphere. While post-democratization Brazil was marked by the rise to power of its left-wing parties, such as the Workers’ Party (*Partido dos Trabalhadores*), recent years have seen the reconfiguration of the far-right, on both the doctrinaire and party level. This blog piece provides a picture of right-wing extremism in Brazil today and debunks the approximations and simplifications that proliferate in the West.
Tragus berteronianus Schult., Mant.
Creators: name: Prunera-Olivé, Joan
name: Vorontsova, Maria S.
name: Williams, Emma V.
name: Mollel, Neduvoto P.
name: Hemp, Andreas
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Poales
Poaceae
Tragus
Tragus berteronianus

description: Tragus berteronianus Schult., Mant. 2: 205 (1824).
 Distribution: Africa, Arabian Pen. to China
 Specimens: MOSHI Chekereni, Abdalla, R. 398 (NHT); Holili, Hemp, A. 1831 (NHT, UBT); Kisangiro, Peterson, P. 24190 (K); Moshi, Haarer, A.E. 39A (K); Moshi, Haarer, A.E. 737 (K); Sanya, Brooks, A.C. 24 (K).
description: Published as part of Prunera-Olivé, Joan, Vorontsova, Maria S., Williams, Emma V., Mollel, Neduvoto P. & Hemp, Andreas, 2021, Checklist of Kilimanjaro grasses shows that both plot and herbarium methods are necessary to record diversity, pp. 201-244 in Phytotaxa 501 (2) on page 242, DOI: 10.11646/phytotaxa.501.2.1, http://zenodo.org/record/5424816
A joint study of early and late spectral distortions of the cosmic microwave background and of the millimetric foreground
Creators: name: Salvaterra, R.
name: Burigana, C.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We have compared the absolute temperature data of the CMB spectrum with models for CMB spectra distorted by a single or two heating processes at different cosmic times. The constraints on the fractional energy injected in the radiation field, DE/E, are mainly provided by the FIRAS instrument aboard the COBE satellite. Under the hypothesis that two heating processes have occurred at different epochs, the limits on DE/E are relaxed by a factor 2 both for the earlier and the later process with respect to the case in which a single energy injection in the thermal history of the universe is considered. In general, the constraints on DE/E are weaker for early processes than for relatively late processes, because of the wavelength coverage of FIRAS data. We considered also the FIRAS calibration as revised by Battistelli et al. 2000, that, in the case of the favourite calibrator emissivity law proposed by the authors, implies significant deviations from a planckian spectrum. An astrophysical explanation of this, although intriguing, seems difficult, both in terms of CMB spectral distortions and in terms of a relevant millimetric foreground. Future precise measurements at longer wavelengths as well as current and future CMB anisotropy space missions will provide independent, direct or indirect, cross checks.
description: 24 pages, 8 figures; includes improvements in response to refere report. Accepted for publication on MNRAS
Solenoxyphus fuscovenosus Fieber 1864
Creators: name: Linnavuori, Rauno E.
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Miridae
Solenoxyphus
Solenoxyphus fuscovenosus

description: Solenoxyphus fuscovenosus Fieber, 1864
 Material examined. QAZVIN: Qazvin, many specimens, 21.vi.2003.
 Comments. In a hilly steppe. Pontomediterranean.
description: Published as part of Linnavuori, Rauno E., 2007, Studies on the Miridae (Heteroptera) of Gilan and the adjacent provinces in northern Iran. II. List of species, pp. 17-56 in Acta Entomologica Musei Nationalis Pragae 47 on page 53, DOI: 10.5281/zenodo.5328235
Detection of HI 21 cm-line absorption in the Warm Neutral Medium and in the Outer Arm of the Galaxy
Creators: name: Dwarakanath, K. S.
name: Carilli, C. L.
name: Goss, W. M.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Using the Westerbork Synthesis Radio Telescope, we have detected HI 21 cm-line absorption in the Warm Neutral Medium of the Galaxy toward the extragalactic source 3C147. This absorption, at an LSR velocity of -29+/-4 km/s with a full width at half maximum of 53+/-6 km/s, is associated with the Perseus Arm of the Galaxy. The observed optical depth is (1.9+/-0.2)*10**(-3). The estimated spin temperature of the gas is 3600+/-360 K. The volume density is 0.4 per cc assuming pressure equilibrium. Toward two other sources, 3C273 and 3C295, no wide HI 21 cm-line absorption was detected. The highest of the 3sigma lower limits on the spin temperature of the Warm Neutral Medium is 2600 K. In addition, we have also detected HI 21 cm-line absorption from high velocity clouds in the Outer Arm toward 3C147 and 3C380 at LSR velocities of -117.3, -124.5 and -113.7 km/s respectively. We find two distinct temperature components in the high velocity clouds with spin temperatures of greater than 1000 K and less than 200 K, respectively.
description: 21 pages inclusive of 7 figures and 2 tables
Application of an Improved Version of McDiarmid Inequality in Finite-Key-Length Decoy-State Quantum Key Distribution
Creators: name: Chau, H. F.
name: Ng, K. C. Joseph
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: In practical decoy-state quantum key distribution, the raw key length is finite. Thus, deviation of the estimated single photon yield and single photon error rate from their respective true values due to finite sample size can seriously lower the provably secure key rate $R$. Current method to obtain a lower bound of $R$ follows an indirect path by first bounding the yields and error rates both conditioned on the type of decoy used. These bounds are then used to deduce the single photon yield and error rate, which in turn are used to calculate a lower bound of the key rate $R$. Here we report an improved version of McDiarmid inequality in statistics and show how use it to directly compute a lower bound of $R$ via the so-called centering sequence. A novelty in this work is the optimization of the bound through the freedom of choosing possible centering sequences. The provably secure key rate of realistic 100~km long quantum channel obtained by our method is at least twice that of the state-of-the-art procedure when the raw key length $\ell_\text{raw}$ is $\approx 10^5$ to $10^6$. In fact, our method can improve the key rate significantly over a wide range of raw key length from about $10^5$ to $10^{11}$. More importantly, it is achieved by pure theoretical analysis without altering the experimental setup or the post-processing method. In a boarder context, this work introduces powerful concentration inequality techniques in statistics to tackle physics problem beyond straightforward statistical data analysis especially when the data are correlated so that tools like the central limit theorem are not applicable.
description: 14 pages, 1 table, superseding the result reported in arXiv:1806.05063, to appear in New J Phys
Additional file 4: of Bibliometric analysis of cardiometabolic disorders studies involving NO2, PM2.5 and noise exposure
Creators: name: Yu-Kai Huang
name: Hanneke, Rosie
name: Jones, Rachael
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Cell Biology
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Science Policy

description: Table S1. Top 20 signatureÂ index keywords for five referencesÂ groups. (PDF 127 kb)
Supplementary document for Accurate time-domain and frequency-domain co-simulation approach for OEICs design with Verilog-A - 6792046.pdf
Creators: name: Fang, Hao
name: Liu, Yanan
name: Wu, Lingxiao
name: Xu, Xiao
name: Du, Liuge
name: Sun, Chonglei
name: Zhao, Jia
Publisher: name: Optica Publishing Group
Year: 2024
Subjects: Uncategorized

description: partial Verilog-A code and more supporting information
Stenoparia putoni Fieber 1870
Creators: name: Linnavuori, Rauno E.
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Miridae
Stenoparia
Stenoparia putoni

description: Stenoparia putoni Fieber, 1870
 Material examined. GILAN: Tutkabon – Rudbar, 1 specimen, 6.-8.vi.2002.
 Comments. In a hilly steppe. Recorded from Artemisia and Matthiola. Holomediterranean.
description: Published as part of Linnavuori, Rauno E., 2007, Studies on the Miridae (Heteroptera) of Gilan and the adjacent provinces in northern Iran. II. List of species, pp. 17-56 in Acta Entomologica Musei Nationalis Pragae 47 on page 54, DOI: 10.5281/zenodo.5328235
Associations between teacher–child relationships, children’s literacy achievement, and social competencies for struggling and non-struggling readers in early elementary school
Creators: name: Bratsch-Hines, Mary
name: Varghese, Cheryl
name: Vernon-Feagans, Lynne
Publisher: name: Elsevier
Year: 2019

description:
Teacher–child relationships (TCRs) have been found to play important roles in children’s classroom experiences and learning during the elementary school years. Given the importance of TCRs, the present study examined the associations between conflictual and close TCRs, children’s literacy achievement, and children’s social competencies using a sample of 503 kindergarten and first grade non-struggling and struggling readers and their teachers in ten rural schools in the Southeastern United States. Moderation by struggling reader status was also explored in the associations between conflictual or close TCRs and children’s literacy achievement and social competencies. After controlling for child- and teacher-level characteristics, results from multilevel model analyses indicated that conflictual TCRs were significantly related to lower literacy achievement, more internalizing behaviors, more externalizing behaviors, and fewer prosocial behaviors. Close TCRs were not related to child outcomes, and moderation by struggling reader status was not significant.
Trisetopsis elongata Roser & A. Wolk, Schlechtendalia
Creators: name: Prunera-Olivé, Joan
name: Vorontsova, Maria S.
name: Williams, Emma V.
name: Mollel, Neduvoto P.
name: Hemp, Andreas
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Poales
Poaceae
Trisetopsis
Trisetopsis elongata

description: Trisetopsis elongata (Hochst. ex A.Rich.) Röser & A.Wölk, Schlechtendalia 25: 58 (2013).
 Distribution: Nigeria to Eritrea and S. Trop. Africa, Madagascar
 Specimens: MOSHI Lerang’wa, Grimshaw, J.M. 936 (K); Ol Molog, Greenway, P.J. 6905 (K).
description: Published as part of Prunera-Olivé, Joan, Vorontsova, Maria S., Williams, Emma V., Mollel, Neduvoto P. & Hemp, Andreas, 2021, Checklist of Kilimanjaro grasses shows that both plot and herbarium methods are necessary to record diversity, pp. 201-244 in Phytotaxa 501 (2) on page 242, DOI: 10.11646/phytotaxa.501.2.1, http://zenodo.org/record/5424816
Additional file 2 of A study of knowledge, attitudes, and practices of primary care physicians toward anticoagulant therapy in patients with non-valvular atrial fibrillation in Shanghai, China
Creators: name: Ye, Shasha
name: Wang, Tianhao
name: Liu, Arthur
name: Yu, Ying
name: Pan, Zhigang
name: Gu, Jie
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Cell Biology
subject: Pharmacology
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Mental Health

description: Additional file 2. Table S2 Practice item score of community PCPs on anticoagulant therapy for NVAF patients (n = 462).