cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Eptesicus guineensis
Creators: name: Koopman, Karl F.
Publisher: name: Zenodo
Year: 1993
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Chiroptera
Vespertilionidae
Eptesicus
Eptesicus guineensis

description: Eptesicus guineensis (Bocage, 1889). J. Sei. Math. Phys. Nat. Lisboa, ser. 2, 1:6. TYPE LOCALITY: Guinea-Bissau, Bissau. DISTRIBUTION: Senegal and Guinea to Ethiopia and NE Zaire; perhaps Tanzania. SYNONYMS: rectitragus. COMMENTS: Subgenus Neoronticia. This species is called pusillus by Hayman and Hill (1971); but see Koopman (1975:406, 407).
description: Published as part of Karl F. Koopman, 1993, Order Chiroptera, pp. 137-241 in Mammal Species of the World (2 nd Edition), Washington and London :Smithsonian Institution Press on page 202, DOI: 10.5281/zenodo.7353060
description: {"references": ["Hayman, R. W., and J. E. Hill. 1971. Order Chiroptera. Part 2. Pp. 1 - 73, in The mammals of Africa: An identification manual (J. Meester and H. W. Setzer, eds.) [issued 15 Jul 1971]. Smithsonian Institution Press, Washington, D. C., not continuously paginated.", "Koopman, K. F. 1975. Bats of the Sudan. Bulletin of the American Museum of Natural History, 154: 353 - 444."]}
Schllkle, Karl Hermann, Teologia del Nuevo Testamento. Tomo III. Moral. Ed. Herder. 1 vol. de 504 pgs. 218x142. Barcelona 1975
Creators: name: Faria, Manuel Ferreira De
Publisher: name: Theologica
Year: 1978

description: Theologica, v. 13 n. 1-2 (1978)
Universal quantum computation by the unitary control of ancilla qubits and using a fixed ancilla-register interaction
Creators: name: Proctor, Timothy J.
name: Andersson, Erika
name: Kendon, Viv
Publisher: name: arXiv
Year: 2013
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We characterise a model of universal quantum computation where the register (computational) qubits are controlled by ancillary qubits, using only a single fixed interaction between register and ancillary qubits. No additional access is required to the computational register and the dynamics of both the register and ancilla are unitary. This scheme is inspired by the measurement-based ancilla-driven quantum computation of Anders et al. [PRA 82, 020301(R), 2010], but does not require measurements of the ancillas, and in this respect is similar to the original gate based model of quantum computation. We consider what possible forms this ancilla-register interaction can take, with a proof that the interaction is necessarily locally equivalent to SWAP combined with an entangling controlled gate. We further show which Hamiltonians can create such interactions and discuss two examples; the two-qubit XY Hamiltonian and a particular case of the XXZ Hamiltonian. We then give an example of a simple, finite and fault tolerant gate set for universal quantum computation in this model.
description: 10 pages, Published version
Snyder Momentum Space in Relative Locality
Creators: name: Banburski, Andrzej
name: Freidel, Laurent
Publisher: name: arXiv
Year: 2013
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The standard approaches of phenomenology of Quantum Gravity have usually explicitly violated Lorentz invariance, either in the dispersion relation or in the addition rule for momenta. We investigate whether it is possible in 3+1 dimensions to have a non local deformation that preserves fully Lorentz invariance, as it is the case in 2+1D Quantum Gravity. We answer positively to this question and show for the first time how to construct a homogeneously curved momentum space preserving the full action of the Lorentz group in dimension 4 and higher, despite relaxing locality. We study the property of this relative locality deformation and show that this space leads to a noncommutativity related to Snyder spacetime.
description: 22 pages, 6 figures, matches version accepted in PRD
A Heavy "Neutralino" in Warped Extra dimensions
Creators: name: Vecchi, Luca
Publisher: name: arXiv
Year: 2013
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Generic extensions of the Standard Model that respect baryon and lepton numbers have accidentally stable particles. Typical examples are the lightest exotic neutral fermion, or "neutralino", and fields with non-trivial lepton and baryon charges. In this paper we show that an accidentally stable neutralino is a natural dark matter candidate in models with warped extra dimensions. We find that annihilation into other Kaluza-Klein resonances is often allowed and very efficient. The observed dark matter abundance may then be obtained with couplings of order unity and a compactification scale above the TeV. Light dark matter is also possible in the presence of unsuppressed couplings to the Higgs boson. In this latter case direct detection experiments will soon be able to probe a significant portion of the parameter space.
description: 17 pages (JHEP style) plus Appendices
dissertation.pdf
Creators: name: Topaloudi, Apostolia
Publisher: name: Purdue University Graduate School
Year: 2022
Subjects: Genomics

description: Complex disorders are caused by multiple genetic, environmental, and lifestyle factors, and their interactions. Most human diseases are complex, including many psychiatric, autoimmune, neurodegenerative, and cardiovascular disorders. Understanding their genetic background is an essential step toward developing effective preventive and therapeutic interventions for these disorders. In this dissertation, we present an overview of state-of-the-art methodology that is used to help elucidate the genetic basis of complex diseases and apply these methods to understand the genetic background of different complex disorders. First, we carried out a GWAS for myasthenia gravis (MG), a rare autoimmune disorder, and detected a novel risk locus, AGRN, which encodes a protein, involved in neuromuscular junction activation. Additionally, we observed significant genetic correlation between MG and ADs, and variants with pleiotropic effects. Second, we explored the genetic and phenotypic relationships among 11 different autoimmune disorders (ADs), using GWAS results o to calculate polygenic risk scores (PRS) and performing a PRS- phenome-wide association study (PheWAS) analysis with 3,281 phenotypes available in the UK Biobank. We observed associations of ADs PRS with phenotypes in multiple categories, including lifestyle, biomarkers, mental and physical health. We also explored the shared genetic components among the ADs, through genetic correlation and cross-disorder meta-analysis approaches, where we identified pleiotropic variants among the correlated ADs. Finally, we performed a meta-analysis GWAS of Tourette Syndrome (TS) followed by post-GWAS analyses including biological annotation of the results, and association tests of TS PRS with brain volumes. We detected a novel locus, NR2F1, associated with TS, supported by eQTL and Hi-C data. TS PRS was significantly associated with right and left thalamus volumes and right putamen volume. Overall, our work demonstrates the power of GWAS and related methods to help disentangle the genetic basis of complex disease and provides important insights into the genetic basis of the specific disorders that are the focus of our studies.
Cryptophagus bussi Esser & R & Usa & M 2017, nov.sp.
Creators: name: Esser, Jens
name: R, Nearctic
name: Usa
name: M, New
Publisher: name: Zenodo
Year: 2017
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Cryptophagidae
Cryptophagus
Cryptophagus bussi

description: Cryptophagus bussi nov.sp. T y p e m a t e r i a l: Holotype 3: " USA: NM: Socorro Co., South Mt. Baldy, N 33 95.100, W 107 11.165, 3136 m, baited pitfall trap, 14.08.201 5, leg. R. J. Buss " [coll. ES]. Paratypes: 233, 3♀♀ with the same data as the holotype [cES]; 233, 4♀♀ " USA: NM: Socorro Co.; N33.9849, W107.1861, S. Baldy Peak, pitfall, 21.08.201 5, leg. R. J. Buss " [3♀♀ in cES, 233, 1♀ cBU]; 13, " USA, New Mexico, Socorro Co., Magdalena Mountains, N33°59.100‘, W107°11.165‘, forest, pitfall trap, 30.VI.1998, leg. O. Fegyveres " [MNHM]. E t y m o l o g y: Named after Richard J. Buss, Albuquerque (USA), who collected the most of the type-specimens. D e s c r i p t i o n: Male, hind wings absent, 2,2 mm. Body elongate, elytra broadest in the middle, pronotum 1,4 times broader than long. Pubescence light and fine, only with procumbent hairs. Punctation of the pronotum relatively fine, distance between the punctures in the middle of the surface like the diameter. Punctation of the elytra (basal third) like that of the pronotum. Eyes small but convex, head above the eyes wide as the pronotum between the anterior angles. Antennae slender, 11-segmented with a 3- segmented club (fig. 4). Pronotum 1,4 times broader than long, anterior callosity thickened, with a prominent tooth. Tooth on the margin of the pronotum in the middle, sides behind the tooth convex, in front of it strong concave. Elytra elongate oval, widest in the middle, humeral callus absent. C o m m e n t: Quite characteristic wingless species. The shape of the pronotum resembles C. porrectus CASEY, 1900 (fig. 6) and C. varus WOODROFFE & COOMBS, 1961 (fig. 7), but both are fully winged. C. porrectus was found together with C. bussi in the same pitfall-traps. C. porrectus has a wide distribution throughout the USA. D i s t r i b u t i o n: As far as known restricted on the Magdalena Mountains in New Mexico (fig. 8, 9 and 10). A wider distribution in the mountains ranges of New Mexico is conceivable, also in the neighbouring states.
description: Published as part of Esser, Jens, R, Nearctic, Usa & M, New, 2017, Two new species of Cryptophagus HERBST, 1792 (Coleoptera: Cryptophagidae) from New Mexico (United States of America), pp. 571-576 in Linzer biologische Beiträge 49 (1) on pages 574-575, DOI: 10.5281/zenodo.5357333
Quantum XY criticality in a two-dimensional Bose gas near the Mott transition
Creators: name: Rancon, A.
name: Dupuis, N.
Publisher: name: arXiv
Year: 2013
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: FOS: Physical sciences

description: We derive the equation of state of a two-dimensional Bose gas in an optical lattice in the framework of the Bose-Hubbard model. We focus on the vicinity of the multicritical points where the quantum phase transition between the Mott insulator and the superfluid phase occurs at fixed density and belongs to the three-dimensional XY model universality class. Using a nonperturbative renormalization-group approach, we compute the pressure $P(μ,T)$ as a function of chemical potential and temperature. Our results compare favorably with a calculation based on the quantum O(2) model -- we find the same universal scaling function -- and allow us to determine the region of the phase diagram in the vicinity of a quantum multicritical point where the equation of state is universal. We also discuss the possible experimental observation of quantum XY criticality in a ultracold gas in an optical lattice.
description: v1) 6 pages, 4 figures. v2) Revised version
Report on the Social LCA and Social CBA
Creators: name: National Technical University of Athens
Publisher: name: Zenodo
Year: 2024

description: This deliverable is part of Task 7.4 Task 7.4, as part of the BioSFerA Project, embarked on a mission to conduct a Social Life Cycle Assessment (S-LCA) and Social Cost-Benefit Analysis (S-CBA). The aim was to identify, quantify, and effectively manage social impacts, providing a comprehensive societal perspective on the project’s social viability.
Dynamics of skyrmions in chiral magnets: dynamic phase transitions and equation of motion
Creators: name: Lin, Shi-Zeng
name: Reichhardt, Charles
name: Batista, Cristian D.
name: Saxena, Avadh
Publisher: name: arXiv
Year: 2013
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Pattern Formation and Solitons (nlin.PS)
subject: FOS: Physical sciences

description: We study the dynamics of skyrmions in a metallic chiral magnet. First we show that skyrmions can be created dynamically by destabilizing the ferromagnetic background state through a spin polarized current. We then treat skyrmions as rigid particles and derive the corresponding equation of motion. The dynamics of skyrmions is dominated by the Magnus force, which accounts for the weak pinning of skyrmions observed in experiments. Finally we discuss the quantum motion of skyrmions.
description: 3.2 pages, 4 figures. Proceeding of the 58th Annual Magnetism and Magnetic Materials (MMM) Conference
Hour-glass magnetic spectrum in a stripe-less insulating transition metal oxide
Creators: name: Drees, Y.
name: Lamago, D.
name: Piovano, A.
name: Komarek, A. C.
Publisher: name: arXiv
Year: 2013
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: An hour-glass shaped magnetic excitation spectrum appears to be an universal characteristic of the high-temperature superconducting cuprates. Fluctuating charge stripes or alternative band structure approaches are able to explain the origin of these spectra. Recently, an hour- glass spectrum has been observed in an insulating cobaltate, thus, favouring the charge stripe scenario. Here we show that neither charge stripes nor band structure effects are responsible for the hour-glass dispersion in a cobaltate within the checkerboard charge ordered regime of La2-xSrxCoO4. The search for charge stripe ordering reflections yields no evidence for charge stripes in La1.6Sr0.4CoO4 which is supported by our phonon studies. With the observation of an hour-glass-shaped excitation spectrum in this stripe-less insulating cobaltate, we provide experimental evidence that the hour-glass spectrum is neither necessarily connected to charge stripes nor to band structure effects, but instead, probably intimately coupled to frustration and arising chiral or non-collinear magnetic correlations.
Eptesicus rendalli
Creators: name: Koopman, Karl F.
Publisher: name: Zenodo
Year: 1993
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Chiroptera
Vespertilionidae
Eptesicus
Eptesicus rendalli

description: Eptesicus rendalli (Thomas, 1889). Ann. Mag. Nat. Hist., ser. 6, 3:362. TYPE LOCALITY: Gambia, Bathurst. DISTRIBUTION: Gambia to Somalia, south to Botswana, Malawi, and Mozambique. SYNONYMS: faradjius, phasma. COMMENTS: Subgenus Neorotnicia.
description: Published as part of Karl F. Koopman, 1993, Order Chiroptera, pp. 137-241 in Mammal Species of the World (2 nd Edition), Washington and London :Smithsonian Institution Press on page 203, DOI: 10.5281/zenodo.7353060
Nebular spectroscopy of the nearby type IIb supernova 2011dh
Creators: name: Shivvers, Isaac
name: Mazzali, Paolo
name: Silverman, Jeffrey M.
name: Botyánszki, János
name: Cenko, S. Bradley
name: Filippenko, Alexei
name: Kasen, Daniel
name: Van Dyk, Schuyler D.
name: Clubb, Kelsey I.
Publisher: name: arXiv
Year: 2013
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We present nebular spectra of the nearby Type IIb supernova (SN) 2011dh taken between 201 and 678 days after core collapse. At these late times, SN 2011dh exhibits strong emission lines including a very broad and persistent Hα feature. New models of the nebular spectra confirm that the progenitor of SN 2011dh was a low-mass giant (M ~ 13 - 15 M_sun) that ejected ~0.07 M_sun of 56Ni and ~0.27 M_sun of oxygen at the time of explosion, consistent with the recent disappearance of a candidate yellow supergiant progenitor. We show that light from the SN location is dominated by the fading SN at very late times (~2 yr) and not, for example, by a binary companion or a background source. We present evidence for interaction between the expanding SN blastwave and a circumstellar medium at late times and show that the SN is likely powered by positron deposition by ~1 yr after explosion. We also examine the geometry of the ejecta and show that SN 2011dh's nebular line profiles indicate a globally spherical explosion with aspherical components or clumps.
description: 13 pages, 7 figures; published in MNRAS
Numerical Fitting-based Likelihood Calculation to Speed up the Particle Filter
Creators: name: Li, Tiancheng
name: Sun, Shudong
name: Corchado, Juan M.
name: Sattar, Tariq P.
name: Si, Shubin
Publisher: name: arXiv
Year: 2013
Subjects: subject: Information Theory (cs.IT)
subject: Numerical Analysis (math.NA)
subject: FOS: Computer and information sciences
subject: FOS: Mathematics

description: The likelihood calculation of a vast number of particles is the computational bottleneck for the particle filter in applications where the observation information is rich. For fast computing the likelihood of particles, a numerical fitting approach is proposed to construct the Likelihood Probability Density Function (Li-PDF) by using a comparably small number of so-called fulcrums. The likelihood of particles is thereby analytically inferred, explicitly or implicitly, based on the Li-PDF instead of directly computed by utilizing the observation, which can significantly reduce the computation and enables real time filtering. The proposed approach guarantees the estimation quality when an appropriate fitting function and properly distributed fulcrums are used. The details for construction of the fitting function and fulcrums are addressed respectively in detail. In particular, to deal with multivariate fitting, the nonparametric kernel density estimator is presented which is flexible and convenient for implicit Li-PDF implementation. Simulation comparison with a variety of existing approaches on a benchmark 1-dimensional model and multi-dimensional robot localization and visual tracking demonstrate the validity of our approach.
description: 42 pages, 17 figures, 4 tables and 1 appendix. This paper is a draft/preprint of one paper submitted to the IEEE Transactions
Supplementary material: Notorhinus floresi sp. nov. gen. nov.: The first records of Siphonophorida in Chile and Siphonorhinidae in South America (Diplopoda, Colobognatha)
Creators: name: Moritz, Leif
name: Parra-Gómez, Antonio
Publisher: name: Zenodo
Year: 2023

description: Supplementary material to: Moritz L, Parra-Gómez A (2023) Notorhinus floresi sp. nov. gen. nov.: The first records of Siphonophorida in Chile and Siphonorhinidae in South America (Colobognatha). Arthropod Systematics & Phylogeny 81: 565-579. https://doi.org/10.3897/asp.81.e100520 Photographs were taken at different focus planes and stacked with MicroPublisher 5.0 RTV camera (Q Imaging) mounted to a Leica Z6 imaging system with AUTO-MONTAGE PRO version 5.03.0061 (Synoptics Ltd). For Scanning electron microscopy (SEM) speciemns, were dissected, dehydrated in an ascending ethanol series and air dried. The samples were sputtered with gold (35 nm) with a Cressington Sputter Coater 108auto and examined with a Zeiss Sigma 300 VP scanning electron microscope. Notorhinus floresi Holotype: CHILE • ♂; Biobío, near Caramavida; –37.72698, –73.19339; 21.iix.2019; Edgardo Flores leg. (e23); hand collected under a decaying piece of wood, in a relictual forest surrounded by eucalyptus plantations (Fig. 1C, D); MNHNC 8387 Paratypes: 2 ♂ (ZFMK-MYR 12267, ZFMK-MYR 12268); 3 ♀ (MNHNC 8388, MNHNC 8389, ZFMK-MYR 12269); same data as holotype. Data deposited: - Photographs of the holotype and all paratypes - SEM data of the holotype (MNHNC8387) Notorhinus sp. CHILE • 1♀; Biobío, El Natri, Lanalhue, Contulmo; –37.9, –73.27; 23.iv.2020; Edgardo Flores leg. (e27); MNHNC 8390. Data deposited: - Photographs of single female specimen - SEM data of single female specimen
description: Moritz L, Parra-Gómez A (2023) Notorhinus floresi sp. nov. gen. nov.: The first records of Siphonophorida in Chile and Siphonorhinidae in South America (Colobognatha). Arthropod Systematics & Phylogeny 81: 565-579. https://doi.org/10.3897/asp.81.e100520
S-duality constraint on higher-derivative couplings
Creators: name: Garousi, Mohammad R.
Publisher: name: arXiv
Year: 2013
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The Riemann curvature correction to the type II supergravity at eight-derivative level in string frame is given as e^{-2ϕ}(t_8t_8R^4+\frac{1}{4}\eps_{8}\eps_{8}R^4). For constant dilaton, it has been extended in the literature to the S-duality invariant form by extending the dilaton factor in the Einstein frame to the non-holomorphic Eisenstein series. For non-constant dilaton, however, there are various couplings in the Einstein frame which are not consistent with the S-duality. By constructing the tensors $t_{2n}$ from Born-Infeld action, we include the appropriate Ricci and scalar curvatures as well as the dilaton couplings to make the above action to be consistent with the S-duality.
description: 23 pages, Latex file, no figure; v3:some typos corrected
Magnetometry with nitrogen-vacancy defects in diamond
Creators: name: Rondin, L.
name: Tetienne, J. -P.
name: Hingant, T.
name: Roch, J. -F.
name: Maletinsky, P.
name: Jacques, V.
Publisher: name: arXiv
Year: 2013
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The isolated electronic spin system of the Nitrogen-Vacancy (NV) centre in diamond offers unique possibilities to be employed as a nanoscale sensor for detection and imaging of weak magnetic fields. Magnetic imaging with nanometric resolution and field detection capabilities in the nanotesla range are enabled by the atomic-size and exceptionally long spin-coherence times of this naturally occurring defect. The exciting perspectives that ensue from these characteristics have triggered vivid experimental activities in the emerging field of "NV magnetometry". It is the purpose of this article to review the recent progress in high-sensitivity nanoscale NV magnetometry, generate an overview of the most pertinent results of the last years and highlight perspectives for future developments. We will present the physical principles that allow for magnetic field detection with NV centres and discuss first applications of NV magnetometers that have been demonstrated in the context of nano magnetism, mesoscopic physics and the life sciences.
description: Review article, 28 pages, 16 figures
Non-Abelian off-diagonal geometric phases in nano-engineered four-qubit systems
Creators: name: Mousolou, Vahid Azimi
name: Canali, Carlo M.
name: Sjöqvist, Erik
Publisher: name: arXiv
Year: 2013
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The concept of off-diagonal geometric phase (GP) has been introduced in order to recover interference information about the geometry of quantal evolution where the standard GPs are not well-defined. In this Letter, we propose a physical setting for realizing non-Abelian off-diagonal GPs. The proposed non-Abelian off-diagonal GPs can be implemented in a cyclic chain of four qubits with controllable nearest-neighbor interactions. Our proposal seems to be within reach in various nano-engineered systems and therefore opens up for first experimental test of the non-Abelian off-diagonal GP.
description: Some changes, journal reference added
Universality in mean curvature flow neckpinches
Creators: name: Gang, Zhou
name: Knopf, Dan
Publisher: name: arXiv
Year: 2013
Subjects: subject: Differential Geometry (math.DG)
subject: Analysis of PDEs (math.AP)
subject: FOS: Mathematics
subject: 53C44, 35K93

description: We study noncompact surfaces evolving by mean curvature flow. Without any symmetry assumptions, we prove that any solution that is $C^3$-close at some time to a standard neck will develop a neckpinch singularity in finite time, will become asymptotically rotationally symmetric in a space-time neighborhood of its singular set, and will have a unique tangent flow.
description: More references added, typos corrected
Lift and wakes of flying snakes
Creators: name: Krishnan, Anush
name: Socha, John J.
name: Vlachos, Pavlos P.
name: Barba, L. A.
Publisher: name: arXiv
Year: 2013
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: Flying snakes use a unique method of aerial locomotion: they jump from tree branches, flatten their bodies and undulate through the air to produce a glide. The shape of their body cross-section during the glide plays an important role in generating lift. This paper presents a computational investigation of the aerodynamics of the cross-sectional shape. Two-dimensional simulations of incompressible flow past the anatomically correct cross-section of the species Chrysopelea paradisi show that a significant enhancement in lift appears at a 35-degrees angle of attack, above Reynolds numbers 2000. Previous experiments on physical models also obtained an increased lift, at the same angle of attack. The flow is inherently three-dimensional in physical experiments, due to fluid instabilities, and it is thus intriguing that the enhanced lift also appears in the two-dimensional simulations. The simulations point to the lift enhancement arising from the early separation of the boundary layer on the dorsal surface of the snake profile, without stall. The separated shear layer rolls up and interacts with secondary vorticity in the near-wake, inducing the primary vortex to remain closer to the body and thus cause enhanced suction, resulting in higher lift.
description: 19 pages, 16 figures
Harmonising Access Procedures for Sensitive Data - Workshop at the FAIR Data Day
Creators: name: Hugo, Wim
name: van Kemenade, Jorik
name: Braukmann, Ricarda
Publisher: name: Zenodo
Year: 2022
Subjects: FAIR
Sensitive data
Licences
Open Science

description: This entry contains materials from the workshop "Harmonising Access Procedures for Sensitive Data" held at the FAIR Data Day on November 29th 2022 in Utrecht, The Netherlands. You can find in this entry the slides (powerpoint and pdf) as well as the results of the mentimeter survey that was held during the two (identical) sessions. Abstract of the session: Open Access datasets typically come with creative commons licenses that specify under which conditions a dataset can be re-used. For sensitive data where access is only possible under strict conditions, licenses and access procedures are much less standardised. In this workshop, we want to discuss how existing procedures can be harmonised. We will present a set of machine-readable licenses developed in the context of ODISSEI which are designed to specify additional conditions that often apply to sensitive datasets. These conditions for instance include the verification of the user, their intent, and requirements around the use of secure analysis environments.
The Master T-Operator for Inhomogeneous XXX Spin Chain and mKP Hierarchy
Creators: name: Zabrodin, Anton
Publisher: name: arXiv
Year: 2013
Subjects: subject: Mathematical Physics (math-ph)
subject: High Energy Physics - Theory (hep-th)
subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: FOS: Physical sciences

description: Following the approach of [Alexandrov A., Kazakov V., Leurent S., Tsuboi Z., Zabrodin A., J. High Energy Phys. 2013 (2013), no. 9, 064, 65 pages, arXiv:1112.3310], we show how to construct the master T-operator for the quantum inhomogeneous GL(N) XXX spin chain with twisted boundary conditions. It satisfies the bilinear identity and Hirota equations for the classical mKP hierarchy. We also characterize the class of solutions to the mKP hierarchy that correspond to eigenvalues of the master T-operator and study dynamics of their zeros as functions of the spectral parameter. This implies a remarkable connection between the quantum spin chain and the classical Ruijsenaars-Schneider system of particles.
description: arXiv admin note: text overlap with arXiv:1306.1111
Non-perturbative treatment of strongly-interacting fields: insights from liquid theory
Creators: name: Trachenko, K.
name: Brazhkin, V. V.
Publisher: name: arXiv
Year: 2013
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: High Energy Physics - Lattice (hep-lat)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We outline a new programme of solving the problem of treating strong interactions in field theories. The programme does not involve perturbation theories and associated problems of divergences. We apply our recent idea of treating strongly interacting liquids to field theories by showing the equivalence of Hamiltonians of liquids and interacting fields. In this approach, the motion of the field results in the disappearance of $n-1$ transverse modes with frequency smaller than the Frenkel frequency $ω_{\rm F}$, similar to the loss of two transverse modes in a liquid with frequency $ω
Lasiurus interntedius H. Allen 1862
Creators: name: Koopman, Karl F.
Publisher: name: Zenodo
Year: 1993
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Chiroptera
Vespertilionidae
Lasiurus
Lasiurus interntedius

description: Lasiurus interntedius H. Allen, 1862. Proc. Acad. Nat. Sci. Philadelphia, 14:246. TYPE LOCALITY: Mexico, Tamaulipas, Matamoros. DISTRIBUTION: Honduras to Sinaloa (Mexico) and through Texas to Florida and New Jersey (USA); Cuba. SYNONYMS: floridanus, insularis. COMMENTS: Subgenus Dasypterus. Includes floridanus and insularis; see Hall and Jones (1961:84-87); but see also Silva-Taboada (1976). See Webster et al. (1980, Mammalian Species, 132).
description: Published as part of Karl F. Koopman, 1993, Order Chiroptera, pp. 137-241 in Mammal Species of the World (2 nd Edition), Washington and London :Smithsonian Institution Press on page 207, DOI: 10.5281/zenodo.7353060
description: {"references": ["Hall, E. R., and J. K. Jones, Jr. 1961. North American yellow bats, \" Dasypterus \", and a list of the named kinds of the genus Lasiurus Gray. University of Kansas Publications, Museum of Natural History, 14: 73 - 98.", "Silva-Taboada, G. 1976. Historia y actualizacion taxonomica de algunas especies Antillanas de murcielagos de los generos Pteronotus, Brachyphylla, Lasiurus, y Antrozous (Mammalia: Chiroptera). Poeyana (Academia de Ciencias de Cuba), 153: 1 - 24."]}
Supplementary Figure S1. hsa-miR-143-3p and hsa-miR-145-5p reduces ZO1 expression, increases α-SMA expression, and induces cytoskeletal rearrangement in cultured human podocytes.
Creators: name: Sakairi, Toru
Publisher: name: figshare
Year: 2023
Subjects: Cell physiology

description: Cultured human podocytes were infected with lentiviral particle encoding pre-hsa-miR-143-3p, pre-hsa-miR-145-5p, or scrambled control allele (Sc) and subjected to following analysis. (A) After incubation with or without 5 ng/mL TGF-β1 for 24 hours, ZO1 mRNA expression levels were examined by RT-qPCR. In podocytes ectopically expressing hsa-miR-143-3p and hsa-miR-145-5p, ZO1 mRNA levels were lower than control podocytes expressing Sc both in the presence and absence of TGF-β1. (B, C) Following culture with or without 5 ng/mL TGF-β1 for 72 hours, α-SMA protein expression levels were determined by Western blotting (B) and quantified by densitometry (C). In podocytes ectopically expressing hsa-miR-143-3p and hsa-miR-145-5p, α-SMA protein expression was higher than control podocytes expressing Sc, both when cultured with and without TGF-β1. (D) After 72 hours of incubation with or without 5 ng/mL TGF-β1, F-actin was visualized by rhodamine-phalloidin staining, and ZO1 and α-SMA was stained by immunofluorescent staining. In podocytes expressing hsa-miR-143-3p and hsa-miR-145-5p, F-actin stress fiber formation in the cytoplasm was enhanced, α-SMA expression in the cytoplasm was increased, and ZO1 expression in the intercellular junctions was decreased, respectively. Nuclear signals in α-SMA staining indicate nonspecific signals. Nuclei were stained with 4’,6’-diamidino-2-phenylindole dihydrochloride (DAPI). Original magnification ×400. In panel (A) and (C), values were normalized to those of β-actin and presented as mean ± SD for four samples relative to cells with Sc without TGF-β1. ***, p < 0.001; **, p < 0.01; *, p < 0.05.
Application of Elmer Software Package in Nonlinear Dynamic Analysis to Develop Poincaré Map and Correlation Method based Damage Detection Techniques
Creators: name: Sayandip Ganguly
name: Koushik Roy
Publisher: name: Zenodo
Year: 2023
Subjects: Nonlinear Dynamics
Elmer
Poincare' map

description: This program allows users to perform various types of nonlinear forced vibration analysis using Elmer. Also using the matlab code of Poincare' map users can be benefited in the different field of applications.
Supplementary Figure S2. Smad4 knockdown reduces Smad transcriptional activity by suppressing nuclear translocation of Smad2/3 in cultured human podocytes.
Creators: name: Sakairi, Toru
Publisher: name: figshare
Year: 2023
Subjects: Cell physiology

description: Cultured human podocytes were infected with lentiviral vectors encoding Sh-Smad4 or those encoding non-targeting control (Sh-Ctrl) and subjected to following analysis. (A) Podocytes were transfected with pSmad RE-TK hRluc, a reporter construct for the Smad binding element, incubated with or without 5 ng/mL TGF-β1 for 24 hours, and analyzed for luciferase activity. Luciferase activity of podocytes with Sh-Smad4 was lower than those with Sh-Ctrl, when cultured both with and without TGF-β1. The luciferase activity was normalized to β-galactosidase activity of co-transfected pCMV-β-gal, and the data are shown as mean ± SD for four samples relative to cells with Sh-Ctrl cultured without TGF-β1. (B-D) Following 6 hours of culture in the presence or absence of 5 ng/mL TGF-β1, protein expression of phosphorylated (P)-Smad2 and phosphorylated (P)-Smad3 expression levels in podocytes was examined by Western blotting (B), and quantified by densitometry (C, D). The expression levels of P-smad2 and P-smad3 in podocytes infected with Sh-Smad4 were comparable to those with Sh-Ctrl, respectively. Values of P-Smad2 and P-Smad3 were normalized to those of Smad2/3, and presented as mean ± SD for four samples relative to Sh-Ctrl without TGF-β1. ***, p < 0.001; **, p < 0.01; *, p < 0.05; NS, not significant. (E) Following 30 minutes of incubation with or without 5 ng/mL TGF-β, podocytes were immunostained for Smad2/3. In podocytes infected with Sh-Ctrl, Smad2/3 was present in both cytoplasm and nucleus in the absence of TGF-β1 and confined to nucleus in the presence of TGF-β1. On the other hand, in podocytes infected with Sh-Smad4, cytoplasmic Smad2/3 was present both in the presence and absence of TGF-β1. Nuclei were stained with 4′,6′-diamidino-2-phenylindole dihydrochloride (DAPI). Original magnification ×400.
ChatDashboard: a framework to collect, link, and process donated WhatsApp Chat Log Data
Creators: name: Kohne, Julian
name: Montag, Christian
Publisher: name: Universität Ulm
Year: 2023
Subjects: subject: ChatDashboard
subject: WhatsR
subject: DashboardTester
subject: WhatsApp
subject: Data donation
subject: Relationships
subject: Computer-mediated communication
subject: DDC 150 / Psychology

description: Abstract In this paper, we present ChatDashboard, a framework for collecting, linking, and processing donated WhatsApp chat log data. The framework consists of the WhatsR R package for parsing, anonymizing, and preprocessing donated WhatsApp chat logs, the ChatDashboard R Shiny web app for uploading, reviewing, and securely donating WhatsApp chat logs, and DashboardTester, an automated script for testing the correct setup of the framework by simulating participants. With ChatDashboard, researchers can set up their own data collections to gather transparently donated WhatsApp chat log data from consenting participants and link them to survey responses. It enables researchers to retrospectively collect highly granular data on interpersonal interactions and communication without building their own tools from scratch. We briefly discuss the advantages of donated WhatsApp chat log data for investigating social relationships and provide a detailed explanation of the ChatDashboard framework. Additionally, we provide a step-by-step guideline in the supplementary materials for researchers to set up their own data donation pipelines.
Synthesis and Characterization of Mono- and Diruthenium Compounds
Creators: name: Miller-Clark, Lyndsy Ann
Publisher: name: Purdue University Graduate School
Year: 2022
Subjects: Organometallic chemistry
Inorganic chemistry not elsewhere classified

description: This thesis will focus on two broad topics: the synthesis and characterization of various diruthenium aryl compounds and of mono- and bis-alkynyl unsymmetric compounds based on Ru(II)(dppm)2 and Ru(II)(dppe)2 bridges (dppm = 1,2-bis(diphenylphosphino)methane; dppe = 1,2-bis(diphenylphophino)ethane). Chapters 1–3 focus on multiply bonded metal–metal compounds, utilizing four different ‘paddlewheel’ motifs (dinuclear ruthenium units that are supported by four bidentate ligands). These highly stable mono- and bis-aryl diruthenium compounds are readily prepared using lithium-halogen exchange reactions. Two different oxidation states have been accessed, Ru2(II,III) and Ru2(III,III), through modification of the paddlewheel ligands or coordination of a small, π-accepting ligand at the vacant ruthenium site in Ru2(ap)4(Ar) compounds (ap = 2-anilinopyridinate; Ar = aryl). Chapter 1 discusses the modification of the bidentate ligand to yield two unique Ru2(ap')4(Ar) series, which both exhibit improved solubility over the previously reported un-modified Ru2(ap)4(Ar) series, and the structural, electronic, and optical characterizations of the compounds within these two new Ru2(II,III) series. Chapter 2 builds upon our lab’s previous studies on electron transfer between the two ruthenium centers in [Ru2(ap)4]2(μ-C≡C)x compounds and applies this towards synthesizing and characterizing mixed-valency within a Ru2(III,III) phenylene bridged compound [(NC)Ru2(ap)4]2(μ-1,4-C6H4). Chapter 3 highlights the synthesis and characterization of bis-aryl and bis-alkynyl Ru2(III,III) compounds, Ru2(amtfmp)4(Y)2 (Y = -C≡CPh, -Ph), supported with the electron-withdrawing paddlewheel ligand amtfmp (amtfmp = 2-amino-3-(trifluoromethyl)pyridinate). Chapters 4 and 5 are focused on the synthesis and characterization of both mono- and bis-alkynyl unsymmetric compounds to study photo-induced electron transfer (PET) processes. Chapter 4 features as an introduction to the synthesis of these Ru(II)(dppm)2 and Ru(II)(dppe)2 alkynyl compounds along with some material applications. Chapter 5 discusses the mono- and bis-alkynyl compounds based on Ru(II)(dppm)2 and Ru(II)(dppe)2 bridges that utilized a highly electron-withdrawing chromophore ‘acceptor’ ligand, NAPR (R = isopropyl, mesityl), to generate the B-A (mono-alkynyl) and D-B-A (unsymmetric bis-alkynyl) compounds.
A Dichotomy in Satellite Quenching Around L* Galaxies
Creators: name: Phillips, John I.
name: Wheeler, Coral
name: Boylan-Kolchin, Michael
name: Bullock, James S.
name: Cooper, Michael C.
name: Tollerud, Erik J.
Publisher: name: arXiv
Year: 2013
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We examine the star formation properties of bright (~0.1 L*) satellites around isolated ~L* hosts in the local Universe using spectroscopically confirmed systems in the Sloan Digital Sky Survey DR7. Our selection method is carefully designed with the aid of N-body simulations to avoid groups and clusters. We find that satellites are significantly more likely to be quenched than a stellar mass-matched sample of isolated galaxies. Remarkably, this quenching occurs only for satellites of hosts that are themselves quenched: while star formation is unaffected in the satellites of star-forming hosts, satellites around quiescent hosts are more than twice as likely to be quenched than stellar-mass matched field samples. One implication of this is that whatever shuts down star formation in isolated, passive L* galaxies also plays at least an indirect role in quenching star formation in their bright satellites. The previously-reported tendency for "galactic conformity" in color/morphology may be a by-product of this host-specific quenching dichotomy. The Sérsic indices of quenched satellites are statistically identical to those of field galaxies with the same specific star formation rates, suggesting that environmental and secular quenching give rise to the same morphological structure. By studying the distribution of pairwise velocities between the hosts and satellites, we find dynamical evidence that passive host galaxies reside in dark matter halos that are ~45% more massive than those of star-forming host galaxies of the same stellar mass. We emphasize that even around passive hosts, the mere fact that galaxies become satellites does not typically result in star formation quenching: we find that only ~30% of ~0.1 L* galaxies that fall in from the field are quenched around passive hosts, compared with ~0% around star forming hosts.
description: 14 pages, 9 figures
Test order for quantitative sensory testing (QST) and its impact on the test outcome
Creators: name: Anwer, Hafiz Muhammad Moin
Publisher: name: No Publisher Supplied
Year: 2023

description: Quantitative Sensory Testing (QST) is a group of different tests used to evaluate the sensory function of nerve fibers. This sensory profiling of the nerves is obtained by different QST tests with a specific sequence proposed by The German Research Network on Neuropathic Pain (DFNS)1. In the proposed sequence by DFNS thermal testing comes before the mechanical. Later, Grone et al suggested that if mechanical test is preceded by heat testing, it can change the mechanical test values significantly from the reference values which were proposed by DFNS2. In this study, we used 3 different tests: Heat Pain Threshold (HPT), Cold Pain Threshold (CPT) and Mechanical Pain Threshold (MPT) which are used to evaluate sensory nerve fibers namely A-beta, A-delta and C fibers on two different testing sites i.e., trigeminal (Infraorbital) and extra-trigeminal (Volar forearm). Subjects were examined on any of the testing sites, one week apart. These 3 QST tests were used in 6 possible sequences, with a washout period of 10 minutes between each sequence, to evaluate if these tests depict sequence dependent values. Results: We performed the single factor ANOVA test to analyze any significant difference among the values of QST tests in different sequences. We observed no significant differences in QST values for any sequence for both the testing sites with respective P values were higher than 0.05 (Volar forearm MPT P=0.943, Volar forearm CPT P=0.320, Volar forearm HPT P=0.986, Infraorbital MPT P=0.958, Infraorbital CPT P=0.344 and Infraorbital HPT P=0.986). In our study, we concluded that there was statistically no significant difference among any QST test sequence and QST tests used in our study are independent of sequence.
Application of Elmer Software Package in Nonlinear Dynamic Analysis to Develop Poincaré Map and Correlation Method based Damage Detection Techniques
Creators: name: Sayandip Ganguly
name: Koushik Roy
Publisher: name: Zenodo
Year: 2023
Subjects: Nonlinear Dynamics
Elmer
Poincare' map
Matlab

description: This program allows users to perform various types of nonlinear forced vibration analysis using Elmer. Also using this code users can be benefited in the different field of applications.
Supplementary Figure S3. mTOR signaling partially mediates induction of cytoskeletal rearrangement, upregulation of α-SMA expression, and downregulation of ZO1 expression induced by TGF-β1, but do not affect LCB1/2 expression in cultured human podocytes.
Creators: name: Sakairi, Toru
Publisher: name: figshare
Year: 2023
Subjects: Cell physiology

description: Podocytes were cultured with dimethyl sulfoxide (DMSO) as vehicle control alone, 20 nM rapamycin (Rapa) alone, DMSO plus 5 ng/mL TGF-β1, or 20 nM Rapa plus 5 ng/mL TGF-β1 for 24 hours. (A) In podocytes exposed to DMSO plus TGF-β1, F-actin stress fiber formation was enhanced, ZO1 expression at intercellular junctions was decreased, and α-SMA expression was increased compared to DMSO alone. These changes were partially recovered in podocytes cultured with Rapa plus TGF-β1. Nuclear signals in ZO1 staining indicates non-specific signals. Nuclei were stained with 4′,6′-diamidino-2-phenylindole dihydrochloride (DAPI). Original magnification ×400. (B) Protein expression levels of LC3B1/2, major proteins associated with autophagy, were examined by Western blotting. LC3B1/2 expression levels were comparable among podocytes exposed to DMSO alone, Rapa alone, and DMSO plus TGF-β1.
title: Bronchial carcinoid in a young woman
Creators: name: Carvalho Almeida, Pedro
Publisher: name: EURORAD
Year: 2022
Subjects: subject: Chest imaging
subject: Thorax
subject: Conventional radiography
subject: CT
subject: PET-CT
subject: Clinical Cases

description: Clinical History: A 29-year-old woman presented to the emergency department with fever, cough, hemoptysis, and dyspnea for 2 weeks. She denied chest pain or weight loss and had no history of smoking.

On examination, crackles and wheezes were appreciated at the left lung base during pulmonary auscultation.

description: 29 years, female
Myotis auriculas Baker and Stains 1955
Creators: name: Koopman, Karl F.
Publisher: name: Zenodo
Year: 1993
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Chiroptera
Vespertilionidae
Myotis
Myotis auriculas

description: Myotis auriculas Baker and Stains, 1955. Univ. Kansas Pubi. Mus. Nat. Hist., 9:83. TYPE LOCALITY: Mexico, Tamaulipas, Sierra de Tamaulipas, 10 mi. (16 km) W, 2 mi. (3 km) S Piedra, 1,200 ft. (366 m). DISTRIBUTION: Arizona and New Mexico (USA) to Jalisco and Veracruz (Mexico); Guatemala. SYNONYMS: apache. COMMENTS: Subgenus Myotis. Listed as a subspecies of evotis by Hall and Kelson (1959:169); but also see Genoways and Jones (19696) and Hall (1981:205). See Warner (1982, Mammalian Species, 191).
description: Published as part of Karl F. Koopman, 1993, Order Chiroptera, pp. 137-241 in Mammal Species of the World (2 nd Edition), Washington and London :Smithsonian Institution Press on page 208, DOI: 10.5281/zenodo.7353060
description: {"references": ["Hall, E. R., and K. R. Kelson. 1959. The mammals of North America. Ronald Press Co., New York, 1: 1 - 546; 2: 547 - 1083 + 79.", "Hall, E. R. 1981. The mammals of North America. Second ed. John Wiley and Sons, New York, 1: 1 - 600 + 90, 2: 601 - 1181 + 90.", "Warner, R. M. 1982. Myotis auriculus. Mammalian Species, 191: 1 - 3."]}
Density Functional Theory Study Of Hypothetical PbTiO3-Based Oxysulfides
Creators: name: Brehm, John A.
name: Takenaka, Hiroyuki
name: Lee, Chan-Woo
name: Grinberg, Ilya
name: Bennett, Joseph W.
name: Schoenberg, Michael Rutenberg
name: Rappe, Andrew M.
Publisher: name: arXiv
Year: 2013
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Using density functional theory (DFT) within the local density approximation (LDA), we calculate the physical and electronic properties of PbTiO3 (PTO) and a series of hypothetical compounds PbTiO3-xSx x = 0.2, 0.25, 0.33, 0.5, 1, 2, and 3 arranged in the corner-sharing cubic perovskite structure. We determine that replacing the apical oxygen atom in the PTO tetragonal unit cell with a sulfur atom reduces the x = 0 LDA calculated band gap of 1.47 eV to 0.43 - 0.67 eV for x = 0.2 - 1 and increases the polarization. PBE0 and GW methods predict that the hypothetical compositions x = 0.2 to x = 2 will have band gaps in the visible range. For all values of x < 2, the oxysulfide perovskite retains the tetragonal phase of PbTiO3, and the a-lattice parameter remains within 2.5% of the oxide. Thermodynamic analysis indicates that chemical routes using high temperature gas, such as H2S and CS2, can be used to substitute O for S in PTO for the compositions x = 0.2 - 0.5.
description: 14 pages, 3 figures, 4 tables