cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Maritime Transportation: Between AVs and tankers, there is (not) the middle of the sea
Creators: name: Glauser, Yannik M.
Publisher: name: ETH Zurich
Year: 2021
Subjects: Maritime Transportation
Crude Oil Shipping
Simulation Framework
Network Design
Canal Congestion

description: The maritime transportation of crude oil by tankers represents a major aspect of global trade, as crude oil is refined to all sorts of different fuel products. The crude oil shipping market is a decentralized system based on traditional concepts with multiple stakeholders involved (e.g. ship owners, charterers, ship brokers, etc.). Most recently (March 2021), the blockage of the Suez Canal by a vessel showed that this system can be strongly affected by external factors. Literature on crude oil shipping either addresses approaches for very specific problems, therefore not applicable to other scenarios, or more general aspects, mainly by focusing on analytical methods. Alternatively, we present in this Master’s thesis a general simulation framework in order to analyze, model and simulate the crude oil shipping market in its entirety. For this work, we strongly collaborated with the commercial ship management group, The Signal Group, who provided us access to their valuable knowledge, software and data. The simulation framework describes efficiency in crude oil shipping as combination of incomparable metrics addressing resources in time, emission and cost. Based on that, a concept for preferences is defined where these metrics are considered simultaneously, accounting for mixed strategies during simulation. The mathematical model and implementation of the framework cover multiple different aspects, e.g. graphs representing the transportation network, demands and vessels, etc. By running simulations over time, dynamic aspects of the system could be analyzed, such as congestion at canals. This dynamic interaction and dependence of the vessels on each other enables a new perspective for the usually static scheduling and ship routing problems. The results of the simulations based on different preferences provide first insights on the relations between the chosen metrics for efficiency. The implemented simulation framework provides a solid foundation for further refinements and extensions in the future, especially due to its modularity. Ultimately, this should lead to a better understanding of efficiency in crude oil shipping and its optimization.
Additional file 1: of Effect of the plant-based hemostatic agent Ankaferd Blood Stopper® on the biocompatibility of mineral trioxide aggregate
Creators: name: Dinçol, Muzaffer
name: Ozbas, Hakan
name: Bulent Yılmaz
name: Ersev, Handan
name: Selcuk Gokyay
name: Vakur Olgac
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Plant Biology

description: The raw data. (DOCX 25 kb)
Apolygus
Creators: name: Kim, Junggon
name: Jung, Sunghoon
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Miridae
Apolygus

description: Genus Apolygus China
Apolygus China, 1941: 60 (as subgenus of Lygus; upgraded by Miyamoto, 1987: 582; Lu & Zheng, 1997: 162). Type species: Lygaeus limbatus Fallén, 1807.
description: Published as part of Kim, Junggon & Jung, Sunghoon, 2016, Two new species of the genus Apolygus China (Hemiptera: Heteroptera: Miridae: Mirinae) from the Korean Peninsula, with a key to Korean Apolygus species, pp. 592-598 in Zootaxa 4137 (4) on page 593, DOI: 10.11646/zootaxa.4137.4.12, http://zenodo.org/record/258732
Additional file 6: of Is dying in hospital better than home in incurable cancer and what factors influence this? A population-based study
Creators: name: Gomes, Barbara
name: Calanzani, Natalia
name: Koffman, Jonathan
name: Higginson, Irene
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Science Policy

description: Recruitment flow diagram. (DOCX 51 kb)
Additional file 3: of Association between feeding practices and weight status in young children
Creators: name: Ma, Jing-Qiu
name: Zhou, Li-Li
name: Hu, Yan-Qi
name: Liu, Shan-Shan
name: Sheng, Xiao-Yang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: The young child feeding questionnaire (YCFQ). (PDF 122Â kb)
Systems and methods for retrofit wireless communications in power tools
Creators: name: Vetter, Marc Maurice
Publisher: name: ETH Zurich
Year: 2021

description: A power tool system includes a power tool configured to receive an input power via a cable from a power source. The power tool system also includes a communications system disposed within the power tool. The communications system includes communications circuitry configured to receive operating information related to the power tool. The power tool system includes a retrofit tag removably coupled to an external surface of a housing of the power tool. The retrofit tag is configured to wirelessly couple with the communications system to receive at least a portion of the operating information with a first wireless communication mode. The retrofit tag is configured to transmit at least a portion of the operating information with a second wireless communication mode. The first wireless communication mode is different than the second wireless communication mode.
Systems and methods for retrofit wireless communications in cordless power tools
Creators: name: Vetter, Marc Maurice
Publisher: name: ETH Zurich
Year: 2021
Subjects: Wireless communication
Sensor fusion
Sensor network
Battery

description: A power tool system includes a power tool configured to receive input power from a power device and includes a communications system within the power device, where the communications system comprises communications circuitry configured to receive power tool operating information. The power device is configured to gather power device operating information. The power tool system includes a retrofit tag removably coupled to an external surface of a housing of the power device, the retrofit tag being configured to wirelessly couple with the communications system to receive at least a portion of the power tool operating information and/or the power device operating information with a first wireless communication mode. The retrofit tag is configured to transmit at least a portion of the power tool operating information or the power device operating information with a second wireless communication mode. The first wireless communication mode is different than the second wireless communication mode.
Acrobasis glaucella
Creators: name: Gumhalter, Danijela
name: Kučinić, Mladen
name: Šašić, Martina
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Pyralidae
Acrobasis
Acrobasis glaucella

description: Acrobasis glaucella (Staudinger, 1859)
Biokovo, Gornje Igrane 27.05.1995 (coll. Kučinić)
description: Published as part of Gumhalter, Danijela, Kučinić, Mladen & Šašić, Martina, 2020, Data on pyraloid moth specimens (Lepidoptera: Pyraloidea) held in the collections of CNHM in Zagreb, Croatia, pp. 37-66 in Zootaxa 4895 (1) on page 51, DOI: 10.11646/zootaxa.4895.1.2, http://zenodo.org/record/4321451
Systems and methods for saving battery life in a sensor tag for tools
Creators: name: Vetter, Marc Maurice
name: Neumann, Jens
Publisher: name: ETH Zurich
Year: 2021
Subjects: sensor networks
Sensor fusion
wireless networks
Battery management systems
POWER TOOLS (PRODUCTION ENGINEERING)

description: A method includes measuring raw sensor information of a tool over a period of time with a sensor tag coupled to an external surface of the tool. The method also includes determining one or more events of the tool based on the raw sensor information and advertising a beacon signal at pre-determined intervals to locate a remote computing device. The method also includes wirelessly transmitting a history of the raw sensor information and/or the one or more events over the period of time from the sensor tag to the remote computing device.
Acrobasis legatea
Creators: name: Gumhalter, Danijela
name: Kučinić, Mladen
name: Šašić, Martina
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Pyralidae
Acrobasis
Acrobasis legatea

description: Acrobasis legatea (Haworth, 1811)
Kraljevica 15.07.1901 (coll. Koča); Kraljevica 10.08.1903 (coll. Koča); Vinkovci, Slavonia (coll. Koča)
description: Published as part of Gumhalter, Danijela, Kučinić, Mladen & Šašić, Martina, 2020, Data on pyraloid moth specimens (Lepidoptera: Pyraloidea) held in the collections of CNHM in Zagreb, Croatia, pp. 37-66 in Zootaxa 4895 (1) on page 51, DOI: 10.11646/zootaxa.4895.1.2, http://zenodo.org/record/4321451
Additional file 9: Table S2. of Reciprocal changes in DNA methylation and hydroxymethylation and a broad repressive epigenetic switch characterize FMR1 transcriptional silencing in fragile X syndrome
Creators: name: Brasa, Sarah
name: Mueller, Arne
name: SĂŠbastien Jacquemont
name: Hahne, Florian
name: Rozenberg, Izabela
name: Peters, Thomas
name: Yunsheng He
name: McCormack, Christine
name: Gasparini, Fabrizio
name: Salah-Dine Chibout
name: Grenet, Olivier
name: Moggs, Jonathan
name: Gomez-Mancilla, Baltazar
name: RĂŠmi Terranova
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: List of the real-time qPCR assays. This table indicates the primers sequence as well as chromosome coordinates of amplicon analyzed by real-time qPCR. (DOC 37Â kb)
Additional file 1: of Association between feeding practices and weight status in young children
Creators: name: Ma, Jing-Qiu
name: Zhou, Li-Li
name: Hu, Yan-Qi
name: Liu, Shan-Shan
name: Sheng, Xiao-Yang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: The baseline questionnaire. (PDF 134Â kb)
Against and for Method: Revisiting Architectural Design as Research
Creators: name: Silberberger, Jan
name: Kurath, Monika
name: De Walsche, Johan
name: Böhm, Bernhard
name: Mareis, Claudia
name: Reuter, Wolf
name: Rheinberger, Hans-Jörg
name: Helmersen, Kim
name: Yaneva, Albena
name: Jasper, Adam
name: Perkins, Amy
name: Waterfield, Jeremy
Publisher: name: ETH Zurich
Year: 2021
Subjects: Architectural design
Research
Methodology
Ethnography

description: ISBN:978-3-85676-413-5
Additional file 8: of Is dying in hospital better than home in incurable cancer and what factors influence this? A population-based study
Creators: name: Gomes, Barbara
name: Calanzani, Natalia
name: Koffman, Jonathan
name: Higginson, Irene
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology

description: Sub-analysis of five-factor model with patients who preferred to die at home. (DOCX 16 kb)
Additional file 2: of Association between feeding practices and weight status in young children
Creators: name: Ma, Jing-Qiu
name: Zhou, Li-Li
name: Hu, Yan-Qi
name: Liu, Shan-Shan
name: Sheng, Xiao-Yang
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: The follow-up questionnaire. (PDF 107Â kb)
Bijg`ish usuli bilan tayyorlanadigan ichimliklar
Creators: name: Sultonova Oydina Ibroyimovna, Buxoro muhandislik-texnologiya instituti 3 bosqich talabasi. Buxoro, Uzbekistan
Publisher: name: Zenodo
Year: 2024

description: Amalda bunday bijg‘itish turlicha olib boriladi. [1] Ayrimzavodlarda kvas susloga achitqilar va sut kislota bakteriyalari qo‘shmasdan, lekinsut kislota qo‘shib tayyorlanadi. Bunda bijg‘ish begona (yot) achitqilar ta’siridasodir bo‘ladi. Bu achitqilarning xujayralari suslo sovitilayotganda unga sut kislotaqo‘shilayotganda va kupajlashda shakar siropi qo‘shib aralashtirishda tushishimumkin. Lekin susloga 11- va 13-irq achitqilarining aralash zakvaskasiqo‘shilganda eng yaxshi natijaga erishiladi
Additional file 1: Table S1. of Risk factors for back pain in marines; a prospective cohort study
Creators: name: Monnier, Andreas
name: DjupsjĂśbacka, Mats
name: Larsson, Helena
name: Norman, Kjell
name: BjĂśrn ĂNg
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Neuroscience
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: Computational Biology

description: Univariate regression analyses: odds ratio and 95 % CI for variables not associated (p >0.20) with back pain at 6 and 12 months follow up. Table S2. Univariate regression analyses: odds ratio and 95 % CI for back pain limiting work ability at 6 and 12 months follow up. Table S3. Multiple regression analyses: final unadjusted and adjusted odds ratio for back pain limiting work ability within 6 months from baseline. Table S4. Multiple regression analyses: final odds ratio for back pain limiting work ability within 12 months from baseline. (DOCX 36 kb)
Acrobasis obliqua
Creators: name: Gumhalter, Danijela
name: Kučinić, Mladen
name: Šašić, Martina
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Pyralidae
Acrobasis
Acrobasis obliqua

description: Acrobasis obliqua (Zeller, 1847)
Neretva, Blace 30.06.1996 (coll. Kučinić)
description: Published as part of Gumhalter, Danijela, Kučinić, Mladen & Šašić, Martina, 2020, Data on pyraloid moth specimens (Lepidoptera: Pyraloidea) held in the collections of CNHM in Zagreb, Croatia, pp. 37-66 in Zootaxa 4895 (1) on page 51, DOI: 10.11646/zootaxa.4895.1.2, http://zenodo.org/record/4321451
Additional file 1: of Self-perception and knowledge of evidence based medicine by physicians
Creators: name: Aguirre-Raya, Karen
name: Castilla-Peón, María
name: Barajas-Nava, Leticia
name: Torres-Rodríguez, Violeta
name: Onofre Muñoz-Hernández
name: Garduño-Espinosa, Juan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Survey. (PDF 22 kb)
Whartonia (Asolentria) penthetor Womersley 1957
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Trombiculidae
Whartonia
Whartonia penthetor

description: Whartonia (Asolentria) penthetor Womersley, 1957 a:
ORI
Whartonia penthetor Womersley, 1957 a; Goff 1980c; Stekolnikov 2021
Whartonia (Asolentria) penthetor, Vercammen-Grandjean 1968c
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 20, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Acrobasis repandana
Creators: name: Gumhalter, Danijela
name: Kučinić, Mladen
name: Šašić, Martina
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Pyralidae
Acrobasis
Acrobasis repandana

description: Acrobasis repandana (Fabricius, 1798)
Neretva delta 12.08.1997 (coll. Kučinić)
description: Published as part of Gumhalter, Danijela, Kučinić, Mladen & Šašić, Martina, 2020, Data on pyraloid moth specimens (Lepidoptera: Pyraloidea) held in the collections of CNHM in Zagreb, Croatia, pp. 37-66 in Zootaxa 4895 (1) on page 51, DOI: 10.11646/zootaxa.4895.1.2, http://zenodo.org/record/4321451
Additional file 2: Figure S2. of Revealing misassembled segments in the bovine reference genome by high resolution linkage disequilibrium scan
Creators: name: Utsunomiya, Adam
name: Santos, Daniel
name: Boison, Solomon
name: Utsunomiya, Yuri
name: Milanesi, Marco
name: Bickhart, Derek
name: Ajmone-Marsan, Paolo
name: Sölkner, Johann
name: Garcia, José
name: Fonseca, Ricardo Da
name: Silva, Marcos Da
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology

description: Example of a Misassembled Segment (MisSeg). It shows the (un)expected linkage disequilibrium between markers in an specific segment of the genome when wrongly assembled (PDF 295 kb)
Caragonia Takiya, Cavichioli & Gabriel, 2003, gen. nov.
Creators: name: Takiya, Daniela Maeda
name: Cavichioli, Rodney Ramiro
name: Gabriel
Publisher: name: Zenodo
Year: 2003
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Cicadellidae
Caragonia

description: Species of Caragonia gen. nov.
C. bella, sp. nov. BRAZIL: São Paulo and Minas Gerais states.
C. monstruosa (Signoret, 1853): 335 (Tettigonia), comb. nov. BRAZIL: São Paulo State.
description: Published as part of Takiya, Daniela Maeda, Cavichioli, Rodney Ramiro & Gabriel, 2003, Caragonia, a new genus of Cicadellini (Hemiptera: Cicadellidae) from Southeastern Brazil, pp. 1-10 in Zootaxa 335 on page 7, DOI: 10.5281/zenodo.156539
Additional file 3: Figure S3. of Revealing misassembled segments in the bovine reference genome by high resolution linkage disequilibrium scan
Creators: name: Utsunomiya, Adam
name: Santos, Daniel
name: Boison, Solomon
name: Utsunomiya, Yuri
name: Milanesi, Marco
name: Bickhart, Derek
name: Ajmone-Marsan, Paolo
name: Sölkner, Johann
name: Garcia, José
name: Fonseca, Ricardo Da
name: Silva, Marcos Da
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: Hematology

description: Example of Partially Misassembled Contig (PmisCon). It shows the (un)expected linkage disequilibrium between markers in a partially misassembled contig (PDF 465 kb)
Additional file 1: Figure S1. of Use of next generation sequencing data to develop a qPCR method for specific detection of EU-unauthorized genetically modified Bacillus subtilis overproducing riboflavin
Creators: name: Barbau-Piednoir, Elodie
name: Keersmaecker, Sigrid De
name: Delvoye, Maud
name: CĂŠline Gau
name: Philipp, Patrick
name: Roosens, Nancy
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Sequence of B. subtilis subsp. subtilis str. 168 genome sequence [Genbank:CP010052.1] corresponding to the region containing part of Contig00019 and Contig00022. There is a gap of 37 basepairs (uncoloured region in the figure) between Contig00019 (pink region in figure) and Contig00022 (yellow region in figure), when aligning the obtained contigs to B. subtilis subsp. subtilis str. 168 genome sequence [Genbank:CP010052.1]. PCR and sequence analysis were used to confirm that the genomic regions present on both contigs are indeed adjacent in the GM-Bacillus genome. Hereto, primers Scaf-19-F3-seq (positioned on Contig00019, indicated in green) and Scaf-22-R-seq (positioned on Contig00022, indicated in blue) were used to amplify the flanking regions of the junction between Contig00019 and Contig00022. Subsequently, the obtained PCR fragment was sequenced. (PDF 101 kb)
Acrobasis suavella
Creators: name: Gumhalter, Danijela
name: Kučinić, Mladen
name: Šašić, Martina
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Pyralidae
Acrobasis
Acrobasis suavella

description: Acrobasis suavella (Zincken, 1818)
Vinkovci, Slavonia 30.07.1903, 2 specimens (coll. Koča); Neretva, Blace 30.06.1996 (coll. Kučinić)
description: Published as part of Gumhalter, Danijela, Kučinić, Mladen & Šašić, Martina, 2020, Data on pyraloid moth specimens (Lepidoptera: Pyraloidea) held in the collections of CNHM in Zagreb, Croatia, pp. 37-66 in Zootaxa 4895 (1) on page 51, DOI: 10.11646/zootaxa.4895.1.2, http://zenodo.org/record/4321451
Additional file 3: of Structural identifiability of cyclic graphical models of biological networks with latent variables
Creators: name: Yulin Wang
name: Lu, Na
name: Hongyu Miao
Publisher: name: Figshare
Year: 2016
Subjects: subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Marine Biology
subject: Science Policy

description: Validation Using Benchmark Models. This file contains 5 benchmark models selected from related literature for verifying the validity of the proposed method. (PDF 100Â kb)
Additional file 1: of Rationale, design and methods for the RIGHT Track Health Study: pathways from childhood self-regulation to cardiovascular risk in adolescence
Creators: name: Wideman, Laurie
name: Calkins, Susan
name: Janssen, James
name: Lovelady, Cheryl
name: Dollar, Jessica
name: Keane, Susan
name: Perrin, Eliana
name: Shanahan, Lilly
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: RT Empirical Publications List. (DOCX 22 kb)
Analysis and Prediction of Long Term GNSS Height Time Series and Environmental Loading Effects
Creators: name: Ruttner, Pia
Publisher: name: ETH Zurich
Year: 2021

description: GNSS height residuals often exhibit seasonal amplitudes, that can partly be explained by environmental surface loadings, such as hydrological, non-tidal atmospheric and non-tidal oceanic loading. In this thesis the state of the art procedure to reduce the height component of GNSS residuals in Europe by those environmental loadings is evaluated, with a focus on the residual RMS and amplitude reduction. On the one hand, the environmental loadings are subtracted directly from the residuals and on the other hand their annual component is reconstructed using Singular Spectrum Analysis (SSA), which is then used for the reduction. In the second part of this thesis, more complex relationships between GNSS height residuals and environmental in uences are explored. Temporal Convolutional Networks (TCN) and Random Forests (RF) are used to model and predict the GNSS height residuals, using environmental loadings, raw meteorological data and tropospheric zenith delays as input features. The RMS and amplitude of the GNSS height residuals could be reduced to a median of up to 19% and 23% when using the original loading series, respectively. An RMS reduction of an average of 2% was obtained, by removing the loadings series after rst reconstructing them with SSA. The majority of tested GNSS stations bene t from the inclusion of environmental parameters in their residual prediction. These yield improvements of up to 6% in prediction error, when compared to a prediction using GNSS residual data only.
Apprenticeship Pulse Results November 2021
Creators: name: Bolli, Thomas
name: Caves, Katherine Marie
name: Dändliker, Lena
name: Morlet, Guillaume Maxence
name: Pusterla, Filippo
name: Rageth, Ladina
name: Renold, Ursula
name: Sritharan, Aranya
Publisher: name: ETH Zurich
Year: 2021
Subjects: Vocational Education and Training (VET)
Apprenticeship
Corona

description: Apprenticeship Pulse – Factsheet
Additional file 2. of Implementing Kanyini GAP, a pragmatic randomised controlled trial in Australia: findings from a qualitative study
Creators: name: Hueiming Liu
name: Massi, Luciana
name: Eades, Anne-Marie
name: Howard, Kirsten
name: Peiris, David
name: Redfern, Julie
name: Usherwood, Tim
name: Cass, Alan
name: Patel, Anushka
name: Jan, Stephen
name: Tracey-Lea Laba
Publisher: name: Figshare
Year: 2015
Subjects: Medicine
Developmental Biology
Cancer
Science Policy

description: CONSORT checklist of the completed RCT. (DOC 217 kb)
Additional file 10: of Diversity, evolution and expression profiles of histone acetyltransferases and deacetylases in oomycetes
Creators: name: Wang, Xiao-Wen
name: Guo, Li-Yun
name: Han, Miao
name: Shan, Kun
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Phylogenetic tree of putative novel HATs in oomycetes. A maximum-likelihood phylogenetic tree was constructed with sequences of the conserved domain AT-1 found in the species described in Fig. 2. Different domains were highlighted by different colors and bootstrap values (≥50%) are shown near the tree nodes. (PDF 189 kb)
title: Synthetic chitin oligosaccharide nanocrystals and their higher-order assemblies
Creators: name: Djalali, Surusch
name: Jing, Yun
name: Ogawa, Yu
name: Delbianco, Martina
Publisher: name: Freie Universität Berlin
Year: 2025
Subjects: subject: chitin
subject: hierarchical assembly
subject: synthetic oligosaccharides
classificationCode: 540
subject: Chemie und zugeordnete Wissenschaften

description: Self-assembly is a powerful strategy for creating complex architectures and elucidating the aggregation behaviors of biopolymers. Herein, we investigate the hierarchical assembly of chitin using a bottom-up approach based on synthetic oligosaccharides. We discovered that chitin oligosaccharides self-assemble into platelets, which then form higher-order structures. Subtle changes in experimental conditions drastically altered the self-assembly results, generating a wide array of higher-order architectures. Through systematic investigations employing transmission electron microscopy (TEM), photoinduced force microscopy (PiFM), and atomic force microscopy (AFM), we uncovered the role of water in shaping the different morphologies. This finding gave us the tools to promote the formation of chiral, uniform chitin oligosaccharide bundles. Our work not only sheds light on the fundamental aspects of chitin organization, but also suggests strategies for designing carbohydrate-based materials with tunable structures and properties.
Mikrochips: klein und gefragt
Creators: name: Kamasa, Julian
Publisher: name: ETH Zurich
Year: 2021
Subjects: Mikrochips
HALBLEITER + HALBLEITERTECHNOLOGIE (ELEKTROTECHNIK)
HALBLEITERBAUELEMENTE + ELEKTRONISCHE BAUELEMENTE (ELEKTRONIK)
VEREINIGTE STAATEN VON AMERIKA, USA (NORDAMERIKA)
CHINA (OSTASIEN). VOLKSREPUBLIK CHINA

description: CSS Analysen zur Sicherheitspolitik, 295
description: ISSN:2296-0236
Additional file 10: of Differential cytotoxicity induced by the Titanium(IV)Salan complex Tc52 in G2-phase independent of DNA damage
Creators: name: Pesch, Theresa
name: Schuhwerk, Harald
name: Wyrsch, Philippe
name: Immel, Timo
name: Dirks, Wilhelm
name: Bürkle, Alexander
name: Huhn, Thomas
name: Beneke, Sascha
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Cancer

description: Cell viability assay with U2OS tumor cells (squares) and low-passage HEK293 (circles). Cells were exposed to increasing concentrations of Tc52 (filled) or Tc53 (open) titanium(IV)salan compounds solubilized in DMSO and incubated for 48h. Subsequently, medium was replaced by fresh medium containing 9 μg/ml resazurin and cells were further incubated. Viability is expressed as % of solvent control. Whereas Tc53 is non-toxic in the tested concentration range, Tc52 impairs viability in U2OS and HEK293 cells with an EC20 of 1.5 μM and 2.5 μM, an EC50 of 2 μM and 4 μM, and an EC80 of about 4 μM and 20 μM, respectively. (PDF 1085 kb)
Whartonia (Asolentria) prima Schluger, Grochovskaja, Ngu, Hoe and Tung 1959
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Trombiculidae
Whartonia
Whartonia prima

description: Whartonia (Asolentria) prima Schluger, Grochovskaja, Ngu, Hoe and Tung, 1959:
ORI
Whartonia prima Schluger, Grochovskaja, Ngu, Hoe and Tung, 1959; Stekolnikov 2021
Whartonia (Asolentria) prima, Vercammen-Grandjean 1968c
Syn.: Whartonia mapaensis Chen and Hsu, 1959
Whartonia iwasakii Miyazaki, Kamo and Kawashima, 1959
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 20, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Acrobasis tumidana
Creators: name: Gumhalter, Danijela
name: Kučinić, Mladen
name: Šašić, Martina
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Pyralidae
Acrobasis
Acrobasis tumidana

description: Acrobasis tumidana (Denis & Schiffermüller, 1775)
Neretva, Blace 30.06.1996 (coll. Kučinić)
description: Published as part of Gumhalter, Danijela, Kučinić, Mladen & Šašić, Martina, 2020, Data on pyraloid moth specimens (Lepidoptera: Pyraloidea) held in the collections of CNHM in Zagreb, Croatia, pp. 37-66 in Zootaxa 4895 (1) on page 51, DOI: 10.11646/zootaxa.4895.1.2, http://zenodo.org/record/4321451
MOESM1 of DNA reveals long-distance partial migratory behavior in a cryptic owl lineage
Creators: name: Sadanandan, Keren
name: Tan, David
name: KolbjĂ¸Rn SchjĂ¸Lberg
name: Round, Philip
name: Rheindt, Frank
Publisher: name: Figshare
Year: 2015
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer

description: Additional file 1: Table S1. Ninox sp. samples used in study.
Additional file 1: of Dhurrin metabolism in the developing grain of Sorghum bicolor (L.) Moench investigated by metabolite profiling and novel clustering analyses of time-resolved transcriptomic data
Creators: name: Nielsen, Lasse
name: Stuart, Peter
name: PiÄManovĂĄ, Martina
name: Rasmussen, Simon
name: Olsen, Carl
name: Harholt, Jesper
name: MĂ¸Ller, Birger
name: Bjarnholt, Nanna
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Inorganic Chemistry

description: A-F). Expression profile of CAS measured by qPCR, RNA integrity, concentration and purity, melting curve analysis, qPCR product run on 4% agarose gel, Sanger sequencing results of qPCR products and efficiency test of CAS, ZF and AAPK primers. (PDF 528 kb)
FOOD PRICE DYNAMICS AND ECONOMIC PROSPERITY IN SUB-SAHARAN AFRICA: A COMPREHENSIVE ANALYSIS
Creators: name: Adewale, Olumide Ojo
name: Taiwo, Adesola Adebayo
Publisher: name: Continental Journal
Year: 2024
Subjects: Food Price Index, Global food prices, Consumer behavior, Economic welfare, Substitutability

description: The escalating prices of essential food commodities globally, including cereals, oilseeds, dairy products, and meat, have garnered significant attention in recent years. From 2002 to 2013, the Food Price Index (FPI) experienced a notable surge, reaching its highest levels since the establishment of the United Nations Food and Agriculture Organization (FAO) in 1990. This upward trend in food prices raises concerns about its potential adverse impacts on people's income and overall welfare. Consumers, particularly in the face of limited substitutes, exhibit heightened sensitivity to fluctuations in food prices, which can profoundly influence their consumption choices and economic well-being
Additional file 2: of Differential cytotoxicity induced by the Titanium(IV)Salan complex Tc52 in G2-phase independent of DNA damage
Creators: name: Pesch, Theresa
name: Schuhwerk, Harald
name: Wyrsch, Philippe
name: Immel, Timo
name: Dirks, Wilhelm
name: Bürkle, Alexander
name: Huhn, Thomas
name: Beneke, Sascha
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Cell Biology
subject: Molecular Biology
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Cancer

description: Cell viability assay with HeLa tumor cells (squares) and VH7 normal fibroblasts (circles). Cells were exposed to increasing concentrations of Tc52 (filled) or Tc53 (open) titanium(IV)salan compounds solubilized in DMSO and incubated for 48 h. Subsequently, medium was replaced by fresh medium containing 9 μg/ml resazurin and cells were further incubated. Viability is expressed as % of solvent control. Whereas Tc53 is non-toxic in the tested concentration range, Tc52 impairs viability in HeLa and VH7 cells with an EC20 of 3 μM and 1 μM, an EC50 of 6 μM and 3 μM, respectively, and an EC80 of about 10 μM for both. (PDF 1085 kb)
Gauge Fixing Independence and the Partition Function of BF Theory: With an Application to the Analytic Torsion and the Ruelle Zeta Function
Creators: name: Stucker, Thomas
Publisher: name: ETH Zurich
Year: 2021
Subjects: subject: info:eu-repo/classification/ddc/510
subject: info:eu-repo/classification/ddc/530
subject: Mathematics
subject: FOS: Mathematics
subject: Physics

description: In the first part of this thesis, we give an interpretation of the gauge-fixed partition function of a quantum field theory known as abelian BF theory in terms of certain regularized determinants. We proceed to formulate a partial statement concerning gauge fixing independence of the partition function and show how this result applies to the analytic torsion and the value at zero of the Ruelle zeta function. In the second part, we show how to recover the full Ruelle zeta function from perturbative quantum field theory, as the expectation value of a certain functional.
Cadra figulilella
Creators: name: Gumhalter, Danijela
name: Kučinić, Mladen
name: Šašić, Martina
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Pyralidae
Cadra
Cadra figulilella

description: Cadra figulilella (Gregson, 1871)
Varaždinske Toplice 08.1905 (coll. Koča)
description: Published as part of Gumhalter, Danijela, Kučinić, Mladen & Šašić, Martina, 2020, Data on pyraloid moth specimens (Lepidoptera: Pyraloidea) held in the collections of CNHM in Zagreb, Croatia, pp. 37-66 in Zootaxa 4895 (1) on page 51, DOI: 10.11646/zootaxa.4895.1.2, http://zenodo.org/record/4321451
Additional file 6: of Diversity, evolution and expression profiles of histone acetyltransferases and deacetylases in oomycetes
Creators: name: Wang, Xiao-Wen
name: Guo, Li-Yun
name: Han, Miao
name: Shan, Kun
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Phylogenetic tree of HAFs in oomycetes. A maximum-likelihood phylogenetic tree was constructed with sequences of HAF conserved domains from the species described in Fig. 2. Each domain was highlighted by one color and bootstrap values (≥50%) are shown near the tree nodes. (PDF 194 kb)
Additional file 7: of Dhurrin metabolism in the developing grain of Sorghum bicolor (L.) Moench investigated by metabolite profiling and novel clustering analyses of time-resolved transcriptomic data
Creators: name: Nielsen, Lasse
name: Stuart, Peter
name: PiÄManovĂĄ, Martina
name: Rasmussen, Simon
name: Olsen, Carl
name: Harholt, Jesper
name: MĂ¸Ller, Birger
name: Bjarnholt, Nanna
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Plant Biology
subject: Computational Biology

description: Consensus sequences around the EKC catalytic triad of the nitrilase superfamily defined by genes found in sorghum. (PDF 231 kb)
GPU Acceleration of ADMM for Large-Scale Convex Optimization
Creators: name: Schubiger, Michel
Publisher: name: ETH Zurich
Year: 2019

description: Large-scale convex optimization problems arise in various practical applications. Even though there exist many ecient methods for solving these problems, such as the alternating direction method of multipliers (ADMM), they may take minutes or even hours to compute solutions of very large problem instances. In this thesis we explore the possibilities of using a graphics processing unit (GPU) to accelerate ADMM. We use OSQP as a state-of-the-art implementation of ADMM to analyze the potential to parallelize the algorithm. We identify several parts of the implementation that could be accelerated by using a GPU, such as the direct linear system solver, which we replace with an iterative conjugate gradient (CG) method implemented on a GPU. Our implementation written in CUDA C has been tested on many medium- to large-scale problems in applications ranging from engineering to statistics and nance. The GPU-accelerated algorithm outperforms OSQP by up to 2 orders of magnitude for problems that take more than 15 minutes to solve by the standard OSQP implementation.
Additional file 1: of Hepatitis C â   Assessment to Treatment Trial (HepCATT) in primary care: study protocol for a cluster randomised controlled trial
Creators: name: Roberts, Kirsty
name: Macleod, John
name: Metcalfe, Chris
name: Simon, Joanne
name: Horwood, Jeremy
name: Hollingworth, William
name: Marlowe, Sharon
name: Gordon, Fiona
name: Muir, Peter
name: Coleman, Barbara
name: Vickerman, Peter
name: Harrison, Graham
name: Cherry-Ann Waldron
name: Irving, William
name: Hickman, Matthew
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: HepCATT study algorithm (Read codes). (DOC 118Â kb)
Catastia marginea
Creators: name: Gumhalter, Danijela
name: Kučinić, Mladen
name: Šašić, Martina
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Pyralidae
Catastia
Catastia marginea

description: Catastia marginea (Denis & Schiffermüller, 1775)
Velika 10.06.1893 (coll. Koča); Vinkovci, Kunjevci 25.05.1903, 2 specimens (coll. Koča)
description: Published as part of Gumhalter, Danijela, Kučinić, Mladen & Šašić, Martina, 2020, Data on pyraloid moth specimens (Lepidoptera: Pyraloidea) held in the collections of CNHM in Zagreb, Croatia, pp. 37-66 in Zootaxa 4895 (1) on page 51, DOI: 10.11646/zootaxa.4895.1.2, http://zenodo.org/record/4321451
Additional file 9: of Diversity, evolution and expression profiles of histone acetyltransferases and deacetylases in oomycetes
Creators: name: Wang, Xiao-Wen
name: Guo, Li-Yun
name: Han, Miao
name: Shan, Kun
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Phylogenetic tree of Hat1s in oomycetes. A maximum-likelihood phylogenetic tree was constructed with sequences of Hat1 conserved domains from the species described in Fig.Â 2. Each Oomycetes species contained one Hat1 and they were attributed to 1 clade. Each domain was highlighted by one color and bootstrap values (â Ľ50%) are shown near the tree nodes. (PDF 201Â kb)
Additional file 4: of Differential cytotoxicity induced by the Titanium(IV)Salan complex Tc52 in G2-phase independent of DNA damage
Creators: name: Pesch, Theresa
name: Schuhwerk, Harald
name: Wyrsch, Philippe
name: Immel, Timo
name: Dirks, Wilhelm
name: Bürkle, Alexander
name: Huhn, Thomas
name: Beneke, Sascha
Publisher: name: Figshare
Year: 2016
Subjects: subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: Computational Biology

description: Cell cycle distribution profile of HeLa cells after continuous Tc52 treatment. Representative histograms from data presented in Fig. 2. A: Cell-cycle distribution after 30 h of continuous treatment of cells with 1-10 μM Tc52 (concentration range showing an effect). Note the small (not significant) reduction in G1 with 2 μM Tc52 and the strong reduction with 5 μM and 10 μM Tc52 concomitant with a substantial increase in the subG1 fraction. The sample treated with 5 μM Tc52 displays in addition an increased number of cells in G2, whereas cells treated with 10 μM show a reduction in G2 phase. B: Cell-cycle distribution after 48 h of continuous treatment of cells with 1-10 μM Tc52 (concentration range showing an effect). Note the reduction in G1 with 1-2 μM Tc52 and the nearly complete loss in samples treated with 5 μM and 10 μM Tc52. SubG1 is increased in all samples and cells treated with 1 μM Tc52 display a significant increase in G2 phase. (PDF 1085 kb)
Extending MLIR to support SDFGs
Creators: name: Ates, Berke
Publisher: name: ETH Zurich
Year: 2021
Subjects: High performance computing
intermediate representations
MLIR
Dataflow

description: At present, the optimization of code boils down to minimizing the
movement of data. DaCe achieves this by creating an intermediate
representation and applying different optimizations to it. However,
DaCe is currently only available for source code written in Python. Here
we show that using DaCe to optimize intermediate representations
results in significant performance gains. We found that the Multi-
Level Intermediate Representation (hereafter denoted as MLIR) is well
suited to support more source languages. Our results demonstrate
that creating a dialect in MLIR could potentially allow any source
language to leverage DaCe and profit from the increased performance.
We anticipate this project to result in an optimization pipeline that
decouples the domain scientist from the performance engineer and
increases performance for all existing software projects without manual
optimization. The performance in scientific computing, as well as
personal computing, could be significantly improved.
Additional file 10: of Dhurrin metabolism in the developing grain of Sorghum bicolor (L.) Moench investigated by metabolite profiling and novel clustering analyses of time-resolved transcriptomic data
Creators: name: Nielsen, Lasse
name: Stuart, Peter
name: PiÄManovĂĄ, Martina
name: Rasmussen, Simon
name: Olsen, Carl
name: Harholt, Jesper
name: MĂ¸Ller, Birger
name: Bjarnholt, Nanna
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology
subject: Computational Biology

description: Expression profiles for genes involved in the flavonoid biosynthesis in developing sorghum grain. (PDF 657 kb)
Elacatinus Jordan
Creators: name: Michael S. Taylor
name: Lad Akins
Publisher: name: Zenodo
Year: 2007
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Perciformes
Gobiidae
Elacatinus

description: [[Elacatinus Jordan]]
In the Neotropics, one of the largest genera of gobies is Elacatinus Jordan with two subgenera, Tigrigobius Fowler and Elacatinus (Hoese 1971; Eschmeyer 1998). (We distinguish between the genus and subgenus Elacatinus with sensu lato [s.l.] and sensu stricto [s.s.], respectively.) The subgenus Tigrigobius has five nominal species in the eastern Pacific Ocean (but see Hoese & Reader 2001 for a suggested synonymy) and seven species in the western Atlantic Ocean. In contrast, the subgenus Elacatinus has only a single species in the eastern Pacific, but 15 species are found in the western Atlantic. Together, the 22 western Atlantic species of Elacatinus (s.l.) are distributed variously from Bermuda and the coast of the southeastern United States, southward throughout the Bahamas and Caribbean Sea, to the reefs and offshore islands of Brazil (Böhlke & Robins 1968; Colin 1975; Sazima et al. 1997; Colin 2002; Guimarães et al. 2004). However, the genus is notably depauperate in the Gulf of Mexico, with only three species, E. oceanops Jordon, E. xanthiprora (Böhlke & Robins) and E. macrodon (Beebe and Tee-Van), previously reported.
description: Published as part of Michael S. Taylor & Lad Akins, 2007, Two new species of Elacatinus (Teleostei: Gobiidae) from the Mexican coast of the Gulf of Mexico., pp. 45-51 in Zootaxa 1425 on page 45