cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Fusaricate L, a new fusaric acid derivative from mangrove rhizosphere soil-derived Streptomyces angustmyceticus J-71
Creators: name: Lu, Jiajia
name: Kuang, Ronghui
name: Ye, Jingjing
name: Liang, Zhenyi
name: Xu, Jing
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Neuroscience
subject: Pharmacology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Virology

description: An undescribed fusaric acid derivative, fusaricate L (1) was isolated together with eight known compounds (2-9) from mangrove plant Rhizophora apiculata rhizosphere soil-derived Streptomyces angustmyceticus J-71. The structures of these compounds were established by extensive NMR spectroscopic data and comparison with the data of literature. Moreover, all isolated metabolites were tested for antifungal and antibacterial activities against a panel of plant and human pathogens. Compounds 4, 6, 7 and 9 showed modest antimicrobial activities towards methicillin- susceptible Staphylococcus aureus.
IMPLEMENTING MALDI-TOF MS FOR ENHANCED DISCRIMINATION OF DALDINIA SPECIES (HYPOXYLACEAE) IN THAILAND
Creators: name: Wongkanoun, Sarunyou
Publisher: name: The authors
Year: 2024

description: Poster by Sarunyou Wongkanoun, Esteban Charria-Girón, Boonchuai Chainuwong, Nattawut Boonyuen, Marc Stadler, Prasert Srikitikulchai & Jennifer Luangsa-ard to be presented at the IMC12
Resonance coupling in spiral arms: Patterns for flat rotation curve
Creators: name: Marchuk, Alexander A.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: To address questions about the physical nature and origin of spiral arms in galaxies, it is necessary to measure their dynamical properties, such as the angular speed, $Ω_p$, or the corotation radius. Observations suggest that galaxies may contain several independent spiral patterns simultaneously. It was shown that so-called non-linear resonance coupling plays an important role in such systems. We aim to identify cases of independent spiral patterns for galaxies with a flat rotation curve and to investigate what relative pattern velocities they might have for all possible cases of coupling between the main resonances. We solved equations for the main resonance positions (1:1, 2:1, 4:1) and estimated the ratio $\varpi$ of the corotation radii for two subsequent patterns. For six close galaxies with flat rotation curves, we collected the measurements of the corotation radii in the literature, using at least three different methods in each case for credibility. We found at least two independent spiral patterns for each galaxy and measured the $\varpi$ ratios. For three cases, we obtained $\varpi>3$, indicating that it would be difficult to fit two or even more spiral patterns in the disc. These ratios have been used to derive the wind-up time for spirals, estimated to be several galactic rotations. We find that three pairs of coupling cases, including those that have been vastly acknowledged in galaxies, namely, $OLR_{in}=CR_{out} \& CR_{in}=IUHR_{out}$, have very close $\varpi$ ratios; hence, they ought to be found simultaneously, as observed. We find a strongly confirmed apparent resonance coupling for six galaxies and we show that the observed $\varpi$ is in agreement with theory. In two of them, we identified a previously unreported form of simultaneous coupling, namely, $OLR_{in}=OUHR_{out} \& OUHR_{in}=CR_{out}$. This result was also predicted from the proximity of $\varpi$.
description: Accepted for publication in A&A Letters
Additional file 2 of Genome-wide identification and transcriptome profiling expression analysis of the U-box E3 ubiquitin ligase gene family related to abiotic stress in maize (Zea mays L.)
Creators: name: Liu, Yongle
name: Li, Changgen
name: Qin, Aokang
name: Deng, Wenli
name: Chen, Rongrong
name: Yu, Hongyang
name: Wang, Yihua
name: Song, Jianbo
name: Zeng, Liming
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2.
Classifying solutions of ${\rm SU}(n+1)$ Toda system around a singular source
Creators: name: Mu, Jingyu
name: Shi, Yiqian
name: Sun, Tianyang
name: Xu, Bin
Publisher: name: arXiv
Year: 2023
Subjects: subject: Analysis of PDEs (math.AP)
subject: Complex Variables (math.CV)
subject: Differential Geometry (math.DG)
subject: FOS: Mathematics

description: Consider a positive integer $n$ and $γ_1>-1,\cdots,γ_n>-1$. Let $D=\{z\in {\Bbb C}:|z|<1\}$, and let $(a_{ij})_{n\times n}$ denote the Cartan matrix of $\frak{su}(n+1)$. Utilizing the ordinary differential equation of $(n+1)$th order around a singular source of ${\rm SU}(n+1)$ Toda system, as discovered by Lin-Wei-Ye ({\it Invent Math}, {\bf 190}(1):169-207, 2012), we precisely characterize a solution $(u_1,\cdots, u_n)$ to the ${\rm SU}(n+1)$ Toda system \begin{equation*}
 \begin{cases} \frac{\partial^2 u_i}{\partial z\partial \bar z}+\sum_{j=1}^n a_{ij} e^{u_j}&=πγ_iδ_0\,\,{\rm on}\,\, D\\
 \frac{\sqrt{-1}}{2}\,\int_{D\backslash \{0\}} e^{u_{i} }{\rm d}z\wedge {\rm d}\bar z &< \infty
 \end{cases} \quad \text{for all}\quad i=1,\cdots, n \end{equation*} using $(n+1)$ holomorphic functions that satisfy the normalized condition. Additionally, we demonstrate that for each $1\leq i\leq n$, $0$ represents the cone singularity with angle $2π(1+γ_i)$ for the metric $e^{u_i}|{\rm d}z|^2$ on $D\backslash\{0\}$, which can be locally characterized by $(n-1)$ non-vanishing holomorphic functions at $0$.
description: In this new version, we have added some references, indicated how our results align with those of Bryant, and addressed additional queries raised by the reviewers
Meta-analysis of the association between C9orf72 repeats and neurodegeneration diseases
Creators: name: Jin, Pingfei
name: Li, Yong
name: Li, Yao
Publisher: name: Taylor & Francis
Year: 2024
Subjects: Biochemistry
Molecular Biology
Neuroscience
Environmental Sciences not elsewhere classified
Cancer
Science Policy

description: To conduct a meta-analysis investigating the relationship between the chromosome 9 open reading frame 72 (C9orf72) GGGGCC (G4C2) and neurodegenerative diseases (NDs), including Alzheimer’s disease (AD), Parkinson’s disease (PD), multiple system atrophy (MSA), progressive supranuclear palsy (PSP) and corticobasal degeneration (CBD). We searched the EMBASE, PubMed, Web of Science, and Cochrane databases. Twenty-seven case-control studies were included, comprising 7202 AD, 5856 PD, 644 MSA, 439 PSP, and 477 CBD cases. This study demonstrated that C9orf72 repeat expansions (>30) were associated with AD, MSA, PSP, and CBD (AD: OR = 4.88, 95% CI = 2.71–8.78; MSA: OR = 6.98, 95% CI = 1.48-33.01; PSP: OR =10.04, 95% CI = 2.72-37.10; CBD: OR = 28.04, 95% CI = 10.17-77.31). C9orf72 intermediate repeat expansions (20–30) were not associated with AD and MSA (AD: OR = 1.16, 95% CI = 0.39–3.45; MSA: OR = 5.65, 95% CI = 0.69–46.19), while C9orf72 repeat expansions (>30) were not associated with the risk of PD (OR = 1.51, 95% CI = 0.55–4.17), C9orf72 intermediate repeat expansions (20–30) were indeed associated with PD (OR = 2.43, 95% CI = 1.20–4.9). The pathological mechanism of C9orf72 G4C2 repeat expansions differs across various NDs due to the varying number of pathogenic expansions. Measuring the number of C9orf72 G4C2 repeats may be useful in the early-stage differential diagnosis of various NDs.
Data management plan
Creators: name: Laboratory for Manufacturing Systems & Automation (LMS)
Publisher: name: Zenodo
Year: 2023

description: Flex4Res aims to create an open platform for resilient manufacturing value chains through trusted data sharing. The project is based on Gaia-X and IDS technologies and utilizes the Digital Twin concept to enable reconfiguration processes in flexible production systems and networks.This deliverable describes thr methodology for Data Managment Plan (DMP) that will be emplied to Flex4Res project. This is the first deliverable (D7.3) of Work Package 7 (WP7) for the Flex4Res project. The methodology that is described aims to protect the data collected or/and generated during the project’s activities and make them FAIR as well. The D7.3 is delivered in M06 of the Flex4Res project, and is udpated based on the latest infiomrtaion avaliable up to the month of delivery.
QC Fail sequencing
Creators: name: Wingett, Steven
name: Krueger, Felix
name: Ewels, Philip
name: Andrews, Simon
Publisher: name: F1000Research
Year: 2017

description: Reaching valid conclusions from DNA sequencing requires accurate data and a thorough understanding of that data, but yet we all too often see researchers misinterpreting artefacts as genuine results. To help researchers be aware of the key technical issues affecting their experiments we developed the website QC Fail. To visit the website please go to: qcfail.com
Additional file 3 of Genome-wide identification and transcriptome profiling expression analysis of the U-box E3 ubiquitin ligase gene family related to abiotic stress in maize (Zea mays L.)
Creators: name: Liu, Yongle
name: Li, Changgen
name: Qin, Aokang
name: Deng, Wenli
name: Chen, Rongrong
name: Yu, Hongyang
name: Wang, Yihua
name: Song, Jianbo
name: Zeng, Liming
Publisher: name: figshare
Year: 2024
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3.
BosonSampling.jl: A Julia package for quantum multi-photon interferometry
Creators: name: Seron, Benoit
name: Restivo, Antoine
Publisher: name: arXiv
Year: 2022
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We present a free open source package for high performance simulation and numerical investigation of boson samplers and, more generally, multi-photon interferometry. Our package is written in Julia, allowing C-like performance with easy notations and fast, high-level coding. Underlying building blocks can easily be modified without complicated low-level language modifications. We present a great variety of routines for tasks related to boson sampling, such as statistical tools, optimization methods, classical samplers and validation tools.
description: 12 pages, 6 figures
Emission spectral non-Markovianity in qubit-cavity systems in the ultrastrong coupling regime
Creators: name: Zhang, Chenyi
name: Yu, Minghong
name: Yan, Yiying
name: Chen, Lipeng
name: Lü, Zhiguo
name: Zhao, Yang
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We study the emission spectra of dissipative Rabi and Jaynes-Cummings models in the non-Markovian and ultrastrong coupling regimes. We have derived a polaron-transformed Nakajima-Zwanzig master equation (PTNZE) to calculate the emission spectra, which eliminates the well known limitations of the Markovian approximation and the standard second-order perturbation. Using the time-dependent variational approach as benchmark, the PTNZE is found to yield accurate emission spectra in certain ultrastrong coupling regimes where the standard second-order Nakajima-Zwanzig master equation breaks down. It is shown that the emission spectra of the dissipative Rabi and Jaynes-Cummings models are in general asymmetric under various initial conditions. Direct comparisons of spectra for the two models illustrate the essential role of the qubit-cavity counter-rotating term and the spectra features under different qubit-cavity coupling strengths and system initial conditions.
description: 15 pages, 7 figures
Intrinsic Alignments of Galaxies: analytic and deep machine learning studies in cosmological simulations
Creators: name: Jagvaral, Yesukhei
Publisher: name: Carnegie Mellon University
Year: 2025
Subjects: classificationCode: 510104
subject: Galactic astronomy
classificationCode: 5109
subject: Space sciences

description: The large-scale galaxy surveys of the 2020s and 2030s, such as the Rubin LSST and Roman missions, promise an unprecedented influx of data and provide cosmological weak lensing measurements with unprecedented precision. Achieving this requires rigorous management of systematic uncertainties through robust methods and models. This thesis investigates one key systematic: the intrinsic alignment (IA) of galaxies, where galaxy shapes align with surrounding large-scale structures, mimicking cosmic shear and thus contaminating weak lensing measurements. Understanding IA is essential not only to carry out weak lensing analyses but also to gain insights into galaxy formation and evolution, as IA reflects underlying galaxy physics, including formation history, morphology, and color. This research thesis approaches IA on two fronts: (1) analytical studies examining the dependence of IA on galaxy morphology, and (2) the development of deep learning models for IA, aimed at generating fast mock galaxy catalogs. 1) Analytical Models Approach: We found that IA signals decrease as galaxies’ dynamics become dominated by angular momentum, such as in pure disk galaxies where alignment becomes nearly undetectable. In contrast, dispersion-dominated systems—like elliptical galaxies and the bulges of two-component galaxies—exhibit stronger IA statistics. 2) Deep Learning Approach: Using novel deep learning methods, particularly graph-based geometric deep learning, we trained models on ∼18,000 galaxies from the TNG100-1 hydrodynamical simulation. The generated samples closely match the simulation data, accurately capturing correlations in both geometric and scalar galaxy properties. The theoretical findings offer valuable insights into the physics underlying IA, suggesting that IA models incorporating morphological information may enhance model robustness. Meanwhile, the deep learning approach makes significant strides in efficiently generating mock galaxy catalogs at low computational cost, hence advancing the arsenal of methods for next-generation cosmological surveys.
sj-docx-1-ene-10.1177_25148486221120543 - Supplemental material for (Dis)Entangling livestock marketplaces: Cattle purchasing, fluid engineering and market displays
Creators: name: Enticott, Gareth
name: Little, Ruth
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 120599 Urban and Regional Planning not elsewhere classified
subject: FOS: Social and economic geography

description: Supplemental material, sj-docx-1-ene-10.1177_25148486221120543 for (Dis)Entangling livestock marketplaces: Cattle purchasing, fluid engineering and market displays by Gareth Enticott and Ruth Little in Environment and Planning E: Nature and Space
title: Sport und Frieden
Creators: name: Drössler, Antonia
Year: 2008

description: Sport ist ein fester Bestandteil unserer Gesellschaft. Im Bezug auf den Frieden wird dem Sport viel zugetraut. Die positiven Seiten, die Sport mit sich bringt, werden hervorgehoben. Die friedensfördernden Möglichkeiten als auch die friedensgefährdenden Eigenschaften, die durch Sport entstehen, werden herausgearbeitet. Ist die Friedensidee im Sport realistisch oder stellt sie doch nur eine Utopie dar?
Degeneracy in excited-state quantum phase transitions of two-level bosonic models and its influence on system dynamics
Creators: name: Khalouf-Rivera, J.
name: Wang, Qian
name: Santos, Lea F.
name: Ramos, J. E. García
name: Carvajal, M.
name: Pérez-Bernal, F.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Physics (quant-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Excited-state quantum phase transitions (ESQPTs) strongly influence the spectral properties of collective many-body quantum systems, changing degeneracy patterns in different quantum phases. Level degeneracies, in turn, affect the system's dynamics. We analyze the degeneracy dependence on the size of two-level boson models with a $u(n+1)$ dynamical algebra, where $n$ is the number of collective degrees of freedom. Below the ESQPT critical energy of these models, the energy gap between neighboring levels that belong to different symmetry sectors gets close to zero as the system size increases. We report and explain why this gap goes to zero exponentially for systems with one collective degree of freedom, but algebraically in models with more than one degree of freedom. As a consequence, we show that the infinite-time average of out-of-time-order correlators is an ESQPT order parameter in finite systems with $n=1$, but in systems with $n>1$, this average only works as an order parameter in the mean-field limit.
sj-docx-1-jis-10.1177_01655515221114452 – Supplemental material for A Tailored Approach: A model for literature searching in complex systematic reviews
Creators: name: Cooper, Chris
name: Booth, Andrew
name: Husk, Kerryn
name: Lovell, Rebecca
name: Frost, Julia
name: Schauberger, Ute
name: Britten, Nicky
name: Garside, Ruth
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 89999 Information and Computing Sciences not elsewhere classified
subject: FOS: Computer and information sciences

description: Supplemental material, sj-docx-1-jis-10.1177_01655515221114452 for A Tailored Approach: A model for literature searching in complex systematic reviews by Chris Cooper, Andrew Booth, Kerryn Husk, Rebecca Lovell, Julia Frost, Ute Schauberger, Nicky Britten and Ruth Garside in Journal of Information Science
title: Möglichkeiten einer Werteerziehung in Bewegung und Sport
Creators: name: Lederer, Harald
Year: 2008

description: Für eine möglichst umfangreiche und fundierte Darstellung und Behandlung des Phänomens „Werte im Sportunterricht“ beschäftigt sich der Abschnitt B mit den begrifflichen Fundamenten des Themas. Unterschiedliche Positionen werden darin gegenübergestellt und verglichen um schlussendlich eine, für die vorliegende Problemstellung sachgemäße und passende, Begriffsbeschreibung zu geben. Welche sind die von Jugendlichen geschätzten Werte? Haben Jugendliche tatsächlich kein Interesse an ihrem Körper und ihrer Gesundheit, wie Medien und Politik uns glauben machen wollen? Sind Jugendliche heutzutage unverbesserlich egoistisch, wie ältere Generation behaupten? Die Antworten auf diese Fragen bilden im Anschluss den Abschnitt C und gleichzeitig das quantitative Fundament der Arbeit. Die Ergebnisse von empirischen Studien werden verglichen, kommentiert und erläutert um auch die Jugend selbst (indirekt) zu Wort kommen zu lassen. Ausgestattet mit begrifflicher Klarheit und empirischen Ergebnissen wird im folgenden Abschnitt D das Phänomen des „Wertewandels“ bzw. seiner medialen Ausformung, des „Werteverfalls“, eingehend beleuchtet. Zu klären ist, ob sich diese beiden Erscheinungen grundsätzlich unterscheiden oder nur sprachliche Feinheiten zu unterschiedlichen Worten für ein und dieselbe Erscheinung führen. Die Umsetzung von konkreten Konzepten von Werteerziehung in der Schule steht im Mittelpunkt des Abschnittes E. Neben der Beleuchtung der Werteerziehung per se im Unterricht soll auch deren methodisch-didaktische Realisierung in der Schule bearbeitet werden. Aus der Fülle von unterschiedlichen didaktischen Ansätzen können jedoch nur 4 Ausgewählte präsentiert werden: der Ansatz der Wertübermittlung, das Konzept der Wertklärung, der moralpsychologische Ansatz von Kohlberg sowie die Möglichkeit der Behandlung von Dilemmasituationen im Unterricht. Den Abschluss bildet schließlich der Abschnitt F in dem Planungsmodule für wertorientierte Sportunterrichtseinheiten präsentiert werden, die sich an den Richtlinien und Konzepten der Literatur orientieren und quasi die praxisorientierte Inszenierung davon ist.
VHLdb: a curated community resource for von Hippel-Lindau syndrome
Creators: name: Tabaro, Francesco
name: Quaglia, Federica
name: Minervini, Giovanni
name: Piovesan, Damiano
name: Tosatto, Silvio C.
Publisher: name: F1000Research
Year: 2017

description: Mutations in von Hippel-Lindau tumor suppressor protein (pVHL) predispose to develop tumors affecting specific organs, such as retina, epididymis, adrenal glands, pancreas and kidneys. VHLdb (http://vhldb.bio.unipd.it/) is a publicly available resource collecting interaction and mutation data from different resources. Currently, it provides more than 400 pVHL interacting proteins and more than 1,000 pVHL mutations. This makes VHLdb the largest available database for pVHL-related information. The set of pVHL interacting proteins have been generated collecting and annotating data from different public databases. A quarter of the retrieved pVHL interactors has been manually curated adding extra value to the data. Mutation data has been collected and annotated from published papers and selected to be highly relevant to clinically observed phenotypes. VHLdb offers different ways to access its data. First, a graphical user web interface exploits advanced visualization strategies to clearly depict both interaction and mutation data. Then, a public RESTful API (Application Programming Interface) is available for headless access to the data. VHLdb is actively maintained at the University of Padova. Three times a year novel data are added and already existing one are updated and reviewed. The maintenance process is managed via a curator web interface which let an expert user to upload custom data. The annotation of novel entries is performed by an automatic in-house developed software. Also, a user-friendly feedback function to improve database content through community-driven curation is also provided.
sj-pdf-1-jdr-10.1177_00220345221112333 – Supplemental material for Automatic 3-Dimensional Cephalometric Landmarking via Deep Learning
Creators: name: Dot, G.
name: Schouman, T.
name: Chang, S.
name: Rafflenbeul, F.
name: Kerbrat, A.
name: Rouch, P.
name: Gajny, L.
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 110599 Dentistry not elsewhere classified
subject: FOS: Clinical medicine
subject: 91299 Materials Engineering not elsewhere classified
subject: FOS: Materials engineering

description: Supplemental material, sj-pdf-1-jdr-10.1177_00220345221112333 for Automatic 3-Dimensional Cephalometric Landmarking via Deep Learning by G. Dot, T. Schouman, S. Chang, F. Rafflenbeul, A. Kerbrat, P. Rouch and L. Gajny in Journal of Dental Research
Additional file 1 of AnnoPRO: a strategy for protein function annotation based on multi-scale protein representation and a hybrid deep learning of dual-path encoding
Creators: name: Zheng, Lingyan
name: Shi, Shuiyang
name: Lu, Mingkun
name: Fang, Pan
name: Pan, Ziqi
name: Zhang, Hongning
name: Zhou, Zhimeng
name: Zhang, Hanyu
name: Mou, Minjie
name: Huang, Shijie
name: Tao, Lin
name: Xia, Weiqi
name: Li, Honglin
name: Zeng, Zhenyu
name: Zhang, Shun
name: Chen, Yuzong
name: Li, Zhaorong
name: Zhu, Feng
Publisher: name: figshare
Year: 2024
Subjects: Biochemistry
Medicine
Biotechnology
Biological Sciences not elsewhere classified
Information Systems not elsewhere classified

description: Additional file 1: Fig S1. Result of Ablation experiment. Fig S2. Comparison among the performances of AnnoPRO using different dimensionality reduction methods (PCA and UMAP). Fig S3. Schematic illustration of the hierarchical multi-label structure of GO families (labeled by fi). Fig S4. Performance assessment of four methods using Heat shock 70 kDa protein 1A (HSPA1A). Fig S5. Performance assessment of four methods using Heat shock 70 kDa protein 2 (HSPA2). Fig S6. A comparison of model performance using different hyperparameters. Table S1. AUC of nine degrees from level 1 to 9 to evaluate AnnoPRO and three representative methods (DeepGOPlus, NetGO3 and PFmulDL). Table S2. Seven classes of protein descriptors generated using PROFEAT covered by AnnoPRO. Table S3. The hyperparameters considered in this study. Method S1. The Processes of Existing Methods for Model Construction. Method S2. The Process of Feature Reset and Its Detailed Methodology.
title: Zur pädagogischen Kompetenz von Trainern und Trainerinnen im Nachwuchsleistungssport
Creators: name: Zetter, Hannes
Year: 2008

description: Die vorliegende Arbeit hat zum Ziel, die pädagogischen Fähigkeiten der Nachwuchstrainer und -trainerinnen im österreichischen Jugendleistungssport zu analysieren. Dabei gilt die subjektive Wahrnehmung des Trainings und des Trainers aus Sicht der Jugendlichen als entscheidendes Kriterium für die Qualität der Beziehung zwischen Trainer und Jugendlichen und in weiterer Folge für mögliche Anregungen bzw. Verbesserungsvorschläge in der Aus- und Fortbildung von Nachwuchstrainern. Im Rahmen einer empirischen Untersuchung werden 430 jugendliche Sportler und Sportlerinnen im Alter von 12-18 Jahren, die ihren Sport regelmäßig und leistungsorientiert ausüben und auch an Wettkämpfen teilnehmen, mittels Fragebogen dazu befragt, wie sie die pädagogische Kompetenz ihres Trainers / ihrer Trainerin in verschiedenen Situationen einschätzen. Die Beurteilung der pädagogischen Kompetenz der Nachwuchstrainer fällt dabei unterschiedlich aus. Offenbar ist der Großteil der Jugendlichen mit den Vermittlungsfähigkeiten und den Bemühungen um ein Zusammengehörigkeitsgefühl ihrer Trainer sehr zufrieden und erhält ein hohes Maß an individueller positiver Rückmeldung von diesen. Auf emotionale Zuwendung sowie auf soziale Unterstützung von ihren Trainern, speziell was den außersportlichen Bereich betrifft, dürfen hingegen bei weitem nicht alle Nachwuchsspieler hoffen. Was die Möglichkeiten zur Mitbestimmung in Training und Spiel für die Jugendlichen betrifft, scheint die Mehrheit der Nachwuchstrainer von einer entsprechenden Umsetzung dieses Konzepts noch weit entfernt zu sein.
description: The aim of the present study was to evaluate the educational competences of the trainers responsible for young professional sportspeople in Austria. The subjective perception of the training and the trainers themselves from the point of view of the young sportspeople is seen as imperative regarding the quality of the relationship between the trainer and the trained teenagers. Furthermore, this perception leads to possible suggestions and ideas for improvement concerning the education and further training of the responsible trainers. Within the framework of the survey, 430 young sportspeople between the age of 12-18 years who regularly practice their sport achievement-oriented and are taking part in competitions were questioned. The evaluation of the educational competence of the trainers turned out to be quite diverse. Apparently, most of the teenagers are satisfied with the communication skills and the effort for a feeling of togetherness of their trainers and obtain a high degree of positive individual feedback from them. However, far from all young sportspeople can count on emotional devotion as well as social support from their trainers, if it comes to areas beyond sports. Concerning the possibilities of a co-determination in training and matches of the teenagers, the majority of the responsible trainers seems to be far from an according realisation of this concept.
Supplemental Material - Targeting Quality or Quantity? The Divergent Effects of Targeting Upper Verses Lower-Tier Leaders of Militant Organizations
Creators: name: Jadoon, Amira
name: Mines, Andrew
name: Milton, Daniel
Publisher: name: SAGE Journals
Year: 2022
Subjects: subject: 220104 Human Rights and Justice Issues
subject: FOS: Philosophy, ethics and religion
subject: 160607 International Relations
subject: FOS: Political science

description: Supplemental Material for Targeting Quality or Quantity? The Divergent Effects of Targeting Upper Verses Lower-Tier Leaders of Militant Organizations by Amira Jadoon, Andrew Mines, and Daniel Milton in Journal of Conflict Resolution
Additional file 2 of AnnoPRO: a strategy for protein function annotation based on multi-scale protein representation and a hybrid deep learning of dual-path encoding
Creators: name: Zheng, Lingyan
name: Shi, Shuiyang
name: Lu, Mingkun
name: Fang, Pan
name: Pan, Ziqi
name: Zhang, Hongning
name: Zhou, Zhimeng
name: Zhang, Hanyu
name: Mou, Minjie
name: Huang, Shijie
name: Tao, Lin
name: Xia, Weiqi
name: Li, Honglin
name: Zeng, Zhenyu
name: Zhang, Shun
name: Chen, Yuzong
name: Li, Zhaorong
name: Zhu, Feng
Publisher: name: figshare
Year: 2024
Subjects: Biochemistry
Medicine
Biotechnology
Biological Sciences not elsewhere classified
Information Systems not elsewhere classified

description: Additional file 2. Review history.
A drug-centric view of drug development: How drugs spread from disease to disease
Creators: name: Rodriguez-Esteban, Raul
Publisher: name: F1000Research
Year: 2017

description: Drugs are often seen as ancillary to the purpose of fighting diseases. Here an alternative view is proposed in which they occupy a spearheading role. In this view, drugs are technologies with an inherent therapeutic potential. Once created, they can spread from disease to disease independently of the drug creator’s original intentions. Through the analysis of extensive literature and clinical trial records, it can be observed that successful drugs follow a life cycle in which they are studied at an increasing rate, and for the treatment of an increasing number of diseases, leading to clinical advancement. Such initial growth, following a power law on average, has a degree of momentum, but eventually decelerates, leading to stagnation and decay. A network model can describe the propagation of drugs from disease to disease in which diseases communicate with each other by receiving and sending drugs. Within this model, some diseases appear more prone to influence other diseases than be influenced, and vice versa. Diseases can also be organized into a drug-centric disease taxonomy based on the drugs that each adopts. This taxonomy reflects not only biological similarities across diseases, but also the level of differentiation of existing therapies. In sum, this study shows that drugs can become contagious technologies playing a driving role in the fight against disease. By better understanding such dynamics, pharmaceutical developers may be able to manage drug projects more effectively.
Benchmarking variant calling tools for NGS data
Creators: name: Sandmann, Sarah
name: Graaf, Aniek De
name: Karimi, Mohsen
name: Reijden, Bert Van Der
name: Hellström-Lindberg, Eva
name: Jansen, Joop
name: Dugas, Martin
Publisher: name: F1000Research
Year: 2017

description: Next-generation sequencing (NGS) has revolutionized the application of personalized medicine. Already, sequencing results influence diagnosis, prognosis and even therapy. However, for the application of NGS in clinical routine, it is most essential to deal with valid results. To perform variant calling, there are numerous tools that usually feature different algorithms, filtering strategies, recommendations and thus, also different output.

We performed variant calling with respect to single nucleotide variants and short indels with allelic frequencies as low as 1%, considering eight open-source tools: GATK HaplotypeCaller, Platypus, VarScan, LoFreq, FreeBayes, SNVer, SAMtools and VarDict. We analyzed two sets of sequencing data of patients with myelodysplastic syndrome (MDS). The first set covers 54 Illumina HiSeq samples, the second set covers 111 Illumina NextSeq samples. Validation of all calls was achieved by re-sequencing on the same platform, on a different platform and expert based review. In addition, we analyzed two sets of simulated data with varying coverages and error profiles, covering 50 samples each. In all cases we evaluated an identical target region consisting of 19 genes (42,322 bp) known to be recurrently mutated in MDS.

Our evaluation shows that variant calling – even of single nucleotide variants and short indels – remains challenging. Validated mutations were missed by every tool. High sensitivity usually went along with low precision. Reproducible results could not be obtained in multithreading-mode. Influence of simulated varying coverages and background noise on variant calling was generally low. Considering both real- and simulated data sets, VarDict performed best.
SSMART: Sequence-structure motif identification for RNA-binding proteins
Creators: name: Munteanu, Alina
name: Neelanjan Mukherjee
name: Ohler, Uwe
Publisher: name: F1000Research
Year: 2017

description: RNA-binding proteins (RBPs) regulate every aspect of RNA metabolism and function. There are hundreds of RBPs encoded in the eukaryotic genomes, and each recognize its RNA targets through a specific mixture of RNA sequence and structure properties. For most RBPs, however, only a primary sequence motif has been determined, while the structure of the binding sites is uncharacterized.

We developed SSMART, an RNA motif finder that simultaneously models the primary sequence and the structural properties of the RNA targets sites. The sequence-structure motifs are represented as consensus strings over a degenerate alphabet, extending the IUPAC codes for nucleotides to account for secondary structure preferences. Evaluation on synthetic data showed that SSMART is able to recover both sequence and structure motifs implanted into 3‘UTR-like sequences, for various degrees of structured/unstructured binding sites. In addition, we successfully used SSMART on high-throughput in vivo and in vitro data, showing that we not only recover the known sequence motif, but also gain insight into the structural preferences of the RBP.

SSMART is freely available at https://ohlerlab.mdc-berlin.de/software/SSMART_137/
Automated analysis and comparison of multiple small RNA datasets with RAPID
Creators: name: Sivarajan Karunanithi
name: Simon, Martin
name: Schulz, Marcel H.
Publisher: name: F1000Research
Year: 2017

description: The role of small RNA (sRNA) molecules in genome regulation is not yet fully understood. Micro RNAs (miRNA), small interfering RNAs (siRNA), piwi-interacting RNAs (piRNA), and trans-acting RNAs (taRNA) are some members of the sRNA family. Existing sRNA analysis tools predominantly focus on predicting novel miRNAs, piRNAs, and quantifying them. This leads to either ignoring other classes of sRNA or require custom made scripts. Understanding the role of these sRNAs in diverse biological processes requires paying attention to minor details, e.g. sRNAs originating from different strands in varying lengths, have different targets to involve in different downstream pathway.

No integrated computational solution exists to investigate novel sRNA data in an unbiased way. Hence, we developed a generic sRNA analysis tool capturing read counts along with strand specificity, length distribution, and base modification. Our tool also automatically produces numerous visualizations covering multiple categories required for sRNA analysis. Our tool allows various normalization techniques to compare different sRNA samples, tailored to different scenarios e.g. knockdown of RNA interference components in the model organism. All analyses can be restricted to certain read lengths. For ease of use, our tool integrates an automated differential expression analysis using DESeq2.

Here, we present some example outputs from our tool. With no doubt, our tool is designed to simplify the life of data analysts and introduces a different perspective of available data.

Our tool, RAPID is available at: https://github.com/SchulzLab/RAPID.
sj-docx-1-asp-10.1177_00037028231210885 - Supplemental material for Calibration of Raman Bandwidths on the Scanning Habitable Environments with Raman and Luminescence for Organics and Chemicals (SHERLOC) Deep Ultraviolet Raman and Fluorescence Instrument Aboard the Perseverance Rover
Creators: name: Jakubek, Ryan S.
name: Bhartia, Rohit
name: Uckert, Kyle
name: Asher, Sanford A.
name: Czaja, Andrew D.
name: Fries, Marc D.
name: Hand, Kevin
name: Haney, Nikole C.
name: Razzell Hollis, Joseph
name: Minitti, Michelle
name: Sharma, Shiv K.
name: Sharma, Sunanda
name: Siljeström, Sandra
Publisher: name: SAGE Journals
Year: 2023
Subjects: Engineering not elsewhere classified

description: Supplemental material, sj-docx-1-asp-10.1177_00037028231210885 for Calibration of Raman Bandwidths on the Scanning Habitable Environments with Raman and Luminescence for Organics and Chemicals (SHERLOC) Deep Ultraviolet Raman and Fluorescence Instrument Aboard the Perseverance Rover by Ryan S. Jakubek, Rohit Bhartia, Kyle Uckert, Sanford A. Asher, Andrew D. Czaja, Marc D. Fries, Kevin Hand, Nikole C. Haney, Joseph Razzell Hollis, Michelle Minitti, Shiv K. Sharma, Sunanda Sharma and Sandra Siljeström in Applied Spectroscopy
NGS-InVi: Integration and visualization of NGS data
Creators: name: Ricaud, Luciano Francisco Fernández
name: López, Marcela Dávila
Publisher: name: F1000Research
Year: 2017

description: Visualization of Next Generation Sequencing (NGS) data is vital to allow researchers to explore and understand the data from experiments or large-scale datasets. A common process involves processing NGS files to create suitable input files (e.g. files in BED format) to be used by visualization software like Circos (http://circos.ca/). Depending on the visualization application, the creation of complex configuration files may be required additionally. This task is time consuming, repetitive and requires constant input from the user to adjust the views to fit the demands. Here we present NGS-InVi an integration and visualization tool that aims to:

- Integrate already established technologies
- Employ state-of-the-art circular visualizations
- Use intuitive point and click navigation
- Make data queries and filtering easy
- Generate graphical representations effortlessly
- Create customized reports

This project is financially supported by the Swedish Foundation for Strategeic Research
Additional file 1 of The ROCK trial—a multidisciplinary Rehabilitation intervention for sudden Out-of-hospital Cardiac arrest survivors focusing on return-to-worK: a pragmatic randomized controlled trial protocol
Creators: name: Christensen, Jan
name: Winkel, Bo Gregers
name: Kirkeskov, Lilli
name: Folke, Fredrik
name: Winther-Jensen, Matilde
name: Eckhardt-Bentsen, Christine
name: Kjærgaard, Jesper
name: Hassager, Christian
name: Wagner, Mette Kirstine
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Mental Health

description: Additional file 1: Supplemental Figure 1. Multi-state model. Multi-state model with 3 transient states and 1 absorbing state. As very few survivors may die during follow-up, this level may be superfluous. Death is therefore excluded in this model and retirement is the only absorbing state. However, retirement must be collected from the survivors, as it is not present in the DREAM database.
sj-pdf-1-aic-10.1177_0310057X231212210 - Supplemental material for Does gender still matter in the pursuit of a career in anaesthesia?
Creators: name: Stewart, Claire H
name: Carter, Jane
name: Purcell, Natalie
name: Balkin, Maryanne
name: Birch, Julia
name: Pearce, Greta C
name: Makar, Timothy
Publisher: name: SAGE Journals
Year: 2023
Subjects: Emergency Medicine

description: Supplemental material, sj-pdf-1-aic-10.1177_0310057X231212210 for Does gender still matter in the pursuit of a career in anaesthesia? by Claire H Stewart, Jane Carter, Natalie Purcell, Maryanne Balkin, Julia Birch, Greta C Pearce, Timothy Makar in Anaesthesia and Intensive Care
EXPERIMENTAL AND NUMERICAL STUDIES ON A PRESTRESSED TRANSFER PLATE SUBJECTED TO STAGED CASTING AND SEQUENTIAL STRESSING
Creators: name: HIN FOO LOW
Publisher: name: Monash University
Year: 2020
Subjects: subject: 90506 Structural Engineering
subject: FOS: Civil engineering
subject: 90502 Construction Engineering

description: Prestressed concrete transfer slabs or transfer plates, are used to support high-rise buildings at transfer levels. This thesis researches its structural behaviour, particularly on the shear wall–transfer plate interaction and the effect of staged casting and sequential stressing of tendons. The research uses strain gauges to monitor concrete stresses of an actual transfer plate, and compare with the results of different Finite Element models. It also studies the effect of staged construction on the ultimate behaviours of prestressed composite structures by laboratory experiments. This research aims to develop design approach and guidelines for the transfer plate design.
title: Bosnien und Herzegowina - ein Land in Transformation
Creators: name: Sarajlija, Almasa
Year: 2008

description: Die Diplomarbeit beschäftigt sich mit den Werthaltungen und Wertorientierungen der Bosniaken (so nennen sich bosnische Muslime seit 1993). Bosnien und Herzegowina ist ein Land in Transformation, und darum geht es im ersten theoretischem Teil der Arbeit. Es werden die wirtschaftlichen, poltischen und gesellschaftlichen Transformationsprozesse analysiert. Im zweiten Teil der Arbeit geht es um die empirische Untersuchung, die im Rahmen diese Diplomarbeit durchgeführt wurde. Dazu wurde eine schriftliche Befragung der Zielgruppe im Sarajevo gemacht. Die Menschen (Zielgruppe waren nur Bosniaken) wurden hinsichtlich ihrer Werthaltungen und Wertorientierungen in wichtigsten Lebensbereichen wie Arbeitssituation, Familie, Ehe, Politik, Religion befragt. Anschließend wurde diese Befragung einer Datenauswertung und Analyse unterzogen.
Supplemental Material - Who is To Blame? Partisans’ Use of Blame Spreading in Reaction to Unfair or Dishonest Behavior
Creators: name: Meli, Amy D.
Publisher: name: SAGE Journals
Year: 2023
Subjects: International Relations

description: Supplemental Material for Who is To Blame? Partisans’ Use of Blame Spreading in Reaction to Unfair or Dishonest Behavior by Amy D. Meli in American Politics Research
Additional file 2 of The ROCK trial—a multidisciplinary Rehabilitation intervention for sudden Out-of-hospital Cardiac arrest survivors focusing on return-to-worK: a pragmatic randomized controlled trial protocol
Creators: name: Christensen, Jan
name: Winkel, Bo Gregers
name: Kirkeskov, Lilli
name: Folke, Fredrik
name: Winther-Jensen, Matilde
name: Eckhardt-Bentsen, Christine
name: Kjærgaard, Jesper
name: Hassager, Christian
name: Wagner, Mette Kirstine
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Mental Health

description: Additional file 2: Supplemental Table 1. Missing data. Standard deviation (SD). A blue-collar worker is a person who performs manual labor. Survivors who completed the thorough individual assessment of rehabilitation needs and completed the neurocognitive assessment, and who were informed of the individually tailored intervention plan is considered adherent to the intervention.
Parity protected superconducting diode effect in topological Josephson junctions
Creators: name: Legg, Henry F.
name: Laubscher, Katharina
name: Loss, Daniel
name: Klinovaja, Jelena
Publisher: name: arXiv
Year: 2023
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: In bulk superconductors or Josephson junctions formed in materials with spin-orbit interaction, the critical current can depend on the direction of current flow and applied magnetic field, an effect known as the superconducting (SC) diode effect. Here, we consider the SC diode effect in Josephson junctions in nanowire devices. We find that the $4π$-periodic contribution of Majorana bound states (MBSs) to the current phase relation (CPR) of single junctions results in a significant enhancement of the SC diode effect when the device enters the topological phase. Crucially, this enhancement of the SC diode effect is independent of the parity of the junction and therefore protected from parity altering events, such as quasiparticle poisoning, which have hampered efforts to directly observe the $4π$-periodic CPR of MBSs. We show that this effect can be generalized to SQUIDs and that, in such devices, the parity-protected SC diode effect can provide a highly controllable probe of the topology in a Josephson junction.
description: 7 pages, 4 figures
sj-docx-1-psp-10.1177_01461672231213899 – Supplemental material for A Comprehensive Aspect-Level Approach to the Personality Micro-Foundations of Foreign Policy Attitudes
Creators: name: Chagas-Bastos, Fabricio H.
Publisher: name: SAGE Journals
Year: 2023
Subjects: Psychology not elsewhere classified

description: Supplemental material, sj-docx-1-psp-10.1177_01461672231213899 for A Comprehensive Aspect-Level Approach to the Personality Micro-Foundations of Foreign Policy Attitudes by Fabricio H. Chagas-Bastos in Personality and Social Psychology Bulletin
Supplemental Material - Uncovering Risk Factors and Outcomes of Pulmonary Embolism in a Nationwide Cohort of Hospitalized Children
Creators: name: Huerta, Carlos Theodore
name: Ramsey, Walter A.
name: Rodriguez, Cindy
name: Parreco, Joshua P.
name: Thorson, Chad M.
name: Sola, Juan E.
name: Perez, Eduardo A.
Publisher: name: SAGE Journals
Year: 2023
Subjects: Surgery

description: Supplemental Material for Uncovering Risk Factors and Outcomes of Pulmonary Embolism in a Nationwide Cohort of Hospitalized Children by Carlos T. Huerta, Walter A. Ramsey, Cindy Rodriguez, Joshua P. Parreco, Chad M. Thorson, Juan E. Sola, and Eduardo A. Perez in The American Surgeon™
sj-pdf-1-asp-10.1177_00037028231217005 - Supplemental material for Azimuth Angle Dependence of Polarized Infrared Spectra of Injection-Molded Polyoxymethylene
Creators: name: Nagai, Naoto
Publisher: name: SAGE Journals
Year: 2023
Subjects: Engineering not elsewhere classified

description: Supplemental material, sj-pdf-1-asp-10.1177_00037028231217005 for Azimuth Angle Dependence of Polarized Infrared Spectra of Injection-Molded Polyoxymethylene by Naoto Nagai in Applied Spectroscopy
sj-docx-1-jdr-10.1177_00220345231210547 – Supplemental material for Claudin-10 Decrease in the Submandibular Gland Contributes to Xerostomia
Creators: name: He, L.
name: Yuan, S.Z.
name: Mao, X.D.
name: Zhao, Y.W.
name: He, Q.H.
name: Zhang, Y.
name: Su, J.Z.
name: Wu, L.L.
name: Yu, G.Y.
name: Cong, X.
Publisher: name: SAGE Journals
Year: 2023
Subjects: Dentistry not elsewhere classified
Materials Engineering not elsewhere classified

description: Supplemental material, sj-docx-1-jdr-10.1177_00220345231210547 for Claudin-10 Decrease in the Submandibular Gland Contributes to Xerostomia by L. He, S.Z. Yuan, X.D. Mao, Y.W. Zhao, Q.H. He, Y. Zhang, J.Z. Su, L.L. Wu, G.Y. Yu and X. Cong in Journal of Dental Research
Additional file 3 of The ROCK trial—a multidisciplinary Rehabilitation intervention for sudden Out-of-hospital Cardiac arrest survivors focusing on return-to-worK: a pragmatic randomized controlled trial protocol
Creators: name: Christensen, Jan
name: Winkel, Bo Gregers
name: Kirkeskov, Lilli
name: Folke, Fredrik
name: Winther-Jensen, Matilde
name: Eckhardt-Bentsen, Christine
name: Kjærgaard, Jesper
name: Hassager, Christian
name: Wagner, Mette Kirstine
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Mental Health

description: Additional file 3: Supplemental Table 2. Participant characteristics. Body mass index (BMI), A blue-collar worker is a person who performs manual labor. New York Heart Association (NYHA) Classification. Return of spontaneous circulation (ROSC). The Montreal Cognitive Assessment (MoCA). Hospital Anxiety and Depression Scale (HADS).