cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Gahrliepia (Gahrliepia) inconstans Fernandes and Kulkarni 2003
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Trombiculidae
Gahrliepia
Gahrliepia inconstans

description: Gahrliepia (Gahrliepia) inconstans Fernandes and Kulkarni, 2003:
ORI
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 23, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Additional file 1: of
                     stg fimbrial operon from S. Typhi STH2370 contributes to association and cell disruption of epithelial and macrophage-like cells
Creators: name: Berrocal, Liliana
name: Fuentes, Juan
name: A Trombert
name: Jofré, Matías
name: Villagra, Nicolás
name: Valenzuela, Luis
name: Mora, Guido
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Physiology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Association or invasion of different eukaryotic cells, including HEp-2 (epithelial cells), U937 (macrophage-like cells), and mononuclear cells directly extracted from human blood. The bacterial strains used include S. Typhi STH2370 WT, S. Typhi STH2370 ΔstgABCD::FRT (Δstg), S. Typhi STH2370 ΔstgABCD::FRT/pSstg (Δstg/pSstg), and S. Typhi STH2370 ΔstgABCD::FRT/pSU19 (Δstg/pSU19); and S. Typhimurium 14028s WT, S. Typhimurium 14028s WT/pSstg, and S. Typhimurium 14028s/pSU19. The tables show values expressed as the means ± standard deviation of 3 full biological replicates, each time in technical triplicate. *p < 0.05 (Student’s-Test) compared with the WT in the corresponding group.
Additional file 7: of Hand/foot splitting and the â  re-evolutionâ   of mesopodial skeletal elements during the evolution and radiation of chameleons
Creators: name: Diaz, Raul
name: Trainor, Paul
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Molecular Biology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology

description: Chameleon specimen measurements. (DOCX 74Â kb)
Additional file 1: of Hand/foot splitting and the â  re-evolutionâ   of mesopodial skeletal elements during the evolution and radiation of chameleons
Creators: name: Diaz, Raul
name: Trainor, Paul
Publisher: name: Figshare
Year: 2015
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Developmental Biology

description: Figure S1. Comparative morphology of autopodia in this study. Dorsoventrally flattened autopodia in outgroup taxa (Sphenodon punctatus, Aspidoscelis uniparens, Pogona vitticeps; A, B, C) were drawn in dorsal view only (with Sphenodon illustrations adapted from [72] and [94]) for both forelimb and hindlimb autopodia. D-N are chameleon illustrations from taxa cleared and stained in this study to look for ossified and chondrified elements comprising the autopodial architecture and are illustrated in both Anterior/Dorsal and Posterior/Ventral views. A) Sphenodon punctatus (Rhynchocephalia), B) Aspidoscelis uniparens (Teiidae), C) Pogona vitticeps (Agamidae), D) Brookesia stumpffi, E) Rieppeleon brevicaudatus, F) Rhampholeon boulengeri, G) Bradypodion pumilum, H) Chamaeleo dilepis, I) Chamaeleo calyptratus, J) Chamaeleo chameleon, K) Furcifer lateralis, L) Furcifer pardalis, M) Trioceros ellioti, N) Trioceros hohnelii. (PDF 2863Â kb)
Additional file 6: of Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination
Creators: name: Liang, Chao
name: Shifeng Cheng
name: Youjun Zhang
name: Yuzhe Sun
name: Fernie, Alisdair
name: Kang, Kang
name: Panagiotou, Gianni
name: Lo, Clive
name: Boon Lim
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Plant Biology
subject: Computational Biology

description: Number of novel transcripts in each sample at T0, T1 and T8. (DOCX 13 kb)
Résultats du «Pouls des places d’apprentissage» de septembre 2022
Creators: name: Bolli, Thomas
name: Caves, Katherine Marie
name: Dändliker, Lena
name: Morlet, Guillaume Maxence Augusti
name: Rageth, Ladina
name: Renold, Ursula
name: Sritharan, Aranya
Publisher: name: ETH Zurich
Year: 2022
Subjects: Vocational education and training (VET)
apprenticeships
Corona

description: Pouls des places d’apprentissage – Fiche d’information
Ergebnisse LehrstellenPuls September 2022
Creators: name: Bolli, Thomas
name: Caves, Katherine Marie
name: Dändliker, Lena
name: Morlet, Guillaume Maxence Augusti
name: Rageth, Ladina
name: Renold, Ursula
name: Sritharan, Aranya
Publisher: name: ETH Zurich
Year: 2022
Subjects: Berufsbildung
Lehrstellen
Corona

description: LehrstellenPuls – Faktenblatt
Additional file 20: of Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination
Creators: name: Liang, Chao
name: Shifeng Cheng
name: Youjun Zhang
name: Yuzhe Sun
name: Fernie, Alisdair
name: Kang, Kang
name: Panagiotou, Gianni
name: Lo, Clive
name: Boon Lim
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology
subject: Computational Biology

description: The correlations between metabolome-based pathway activity and RNA level (left panel) or protein level (right panel). Three pairwise comparisons based on the time points T0, T1, T8 were included. (a) The radius represents the volume (total number of genes/proteins) of the target pathway. (b) Inner circle represents the metabolome-based pathway activity; gray: no significant difference in pathway activities; red: significantly more active; green: significantly less active. (c) The intermediate ring stands for ratio of up- or down-regulated genes/proteins; grey: genes/proteins not significantly differentially expressed; red: up-regulated genes/proteins; green: down-regulated genes/proteins. (d) The outer thin ring stands for the relationship between metabolome-based pathway activity and the ratio of up- and down-regulated genes/proteins; red: positive correlation (e.g. higher metabolome- based activity and higher number of up-regulated genes), green: negative correlation (e.g. higher metabolome-based activity and higher number of down-regulated genes). (PDF 2601 kb)
Additional file 7: of Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination
Creators: name: Liang, Chao
name: Shifeng Cheng
name: Youjun Zhang
name: Yuzhe Sun
name: Fernie, Alisdair
name: Kang, Kang
name: Panagiotou, Gianni
name: Lo, Clive
name: Boon Lim
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Validation of candidate genes in photosystem of wild type Arabidopsis by qRT-PCR. All the values were calculated by fold change of the value in two compared time points. (A) indicated RNA-seq data and (B) indicated qRT-PCR data. Data were expressed as means with ± SD of three biological replicates. The significant changes in T1 and T8 were compared with T0, respectively. Asterisks indicate significant difference, *P
Additional file 11: of Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination
Creators: name: Liang, Chao
name: Shifeng Cheng
name: Youjun Zhang
name: Yuzhe Sun
name: Fernie, Alisdair
name: Kang, Kang
name: Panagiotou, Gianni
name: Lo, Clive
name: Boon Lim
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Validation of selected proteins in photosystem by western blotting. (DOCX 153 kb)
MOESM4 of Insights into isoprene production using the cyanobacterium Synechocystis sp. PCC 6803
Creators: name: Pade, Nadin
name: Erdmann, Sabrina
name: Enke, Heike
name: Dethloff, Frederik
name: DĂźhring, Ulf
name: Georg, Jens
name: Wambutt, Juliane
name: Kopka, Joachim
name: Hess, Wolfgang
name: Zimmermann, Ralf
name: Kramer, Dan
name: Hagemann, Martin
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: Plant Biology

description: Additional file 4. Gas chromatography (GC) and mass spectrometry (MS insert) analysis of the head space gas. The arrow marks the GC peak showing the retention time of isoprene in cells of the transformed Synechocystis strains. The MS analysis of this peak shows the typical pattern of fragmentation of the isoprene standard. The unknown peak was also found in wild type cells not transformed with the pVZ325a vector. Hence it doesn`t correlate with the expression of ispS nor with the occurrence of the shuttle vector.
A Platform-Agnostic Model and Benchmark Suite for Serverless Workflows
Creators: name: Brandner, Laurin
Publisher: name: ETH Zurich
Year: 2022
Subjects: serverless
Serverless Functions
Serverless Computing
excamera
Distributed computing
Scalability
AWS, Concurrency
MapReduce
Serverless Workflows
Parallelism

description: In recent years, Serverless Computing has gained increasing attention in research and industry. Its potential in scalability and efficiency has led major cloud vendors to introduce workflow services that orchestrate serverless functions efficiently. However, these frameworks are based on entirely different architectures, whose characteristics have only poorly been studied. Moreover, the rapid development of these commercial systems makes it hard to keep track of their pros and cons. To fill the knowledge gap, we introduce a framework to compare and evaluate serverless workflow systems. It consists of three components: a model, a platform-agnostic workflow definition, and a benchmark suite. The model is a high-level abstraction of workflows and acts as the basis for a rigorous analysis. We introduce a new workflow definition that transcribes into multiple proprietary paradigms. We use it to implement the benchmark suite, composed of four micro-benchmarks and five application benchmarks. Together, they serve as a great tool to analyze in-depth the services offered by AWS, Azure, and Google Cloud. We evaluate them in terms of scalability, runtime, overhead, and more, yielding a great overview of the current state-of-the-art.
MOESM3 of Insights into isoprene production using the cyanobacterium Synechocystis sp. PCC 6803
Creators: name: Pade, Nadin
name: Erdmann, Sabrina
name: Enke, Heike
name: Dethloff, Frederik
name: DĂźhring, Ulf
name: Georg, Jens
name: Wambutt, Juliane
name: Kopka, Joachim
name: Hess, Wolfgang
name: Zimmermann, Ralf
name: Kramer, Dan
name: Hagemann, Martin
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Additional file 3. Map of the autonomous vector pVZ325a [57], which was used to express the codon-adapted cDNA of the ispS gene from Pueraria montana for the expression in Synechocystis sp. PCC 6803. The synthetic P psaA* -ispS-oop DNA fragment contained upstream a SalI restriction site and downstream a PstI site, which facilitated subsequent insertion into the shuttle vector pVZ325.
MOESM9 of Insights into isoprene production using the cyanobacterium Synechocystis sp. PCC 6803
Creators: name: Pade, Nadin
name: Erdmann, Sabrina
name: Enke, Heike
name: Dethloff, Frederik
name: DĂźhring, Ulf
name: Georg, Jens
name: Wambutt, Juliane
name: Kopka, Joachim
name: Hess, Wolfgang
name: Zimmermann, Ralf
name: Kramer, Dan
name: Hagemann, Martin
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Molecular Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Marine Biology
subject: Inorganic Chemistry
subject: Plant Biology

description: Additional file 9. List of primers used in this study for RT-PCR and qPCR.
Hylaeamys yunganus
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Cricetidae
Hylaeamys
Hylaeamys yunganus

description: Hylaeamys yunganus
Karyotype: 2n = 58 and FN = 62. Autosomal complement: three small metacentric pairs, and 25 acrocentric pairs large to small decreasing in size. Sex chromosomes: X, a large acrocentric; Y, a small acrocentric (Gardner & Patton 1976, pp. 6, Fig. 2B; Patton et al. 2000; Volobouev & Aniskin 2000). C-banding metaphases exhibited blocks of constitutive heterochromatin on the pericentromeric region of all autosomes and on the X chromosome. G-banding was also performed (Volobouev & Aniskin 2000).
A different karyotype was reported by Gardner & Patton (1976), with 2n = 60 and FN = 66, the karyotype of this form was nearly identical to that one mentioned before except for the presence of a small metacentric pair. Another karyotype with 2n = 60 and NF = 64 was reported by Andrades-Miranda et al. (2000). This karyotype was similar to the one reported by Gardner & Patton (1976) (2n = 60, FN = 66), the difference was due to one more acrocentric pair and one less small biarmed pair, resulting in a FN = 64. Samples from Suriname presented a diploid number from 52 to 59 and fundamental number from 64 to 67 (Koop et al. 1983; Kerridge & Baker 1990). The variation in diploid and fundamental number of samples from Suriname occurs sympatrically, whereas the others karyotypes reported for the genus represent different populations (Table 5, Fig. 6).
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 29, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
MOESM8 of Insights into isoprene production using the cyanobacterium Synechocystis sp. PCC 6803
Creators: name: Pade, Nadin
name: Erdmann, Sabrina
name: Enke, Heike
name: Dethloff, Frederik
name: DĂźhring, Ulf
name: Georg, Jens
name: Wambutt, Juliane
name: Kopka, Joachim
name: Hess, Wolfgang
name: Zimmermann, Ralf
name: Kramer, Dan
name: Hagemann, Martin
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Neuroscience
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Additional file 8. The genome plot shows the graphical overview of array signal intensities mapped along the Synechocystis chromosome. Both strands of the respective chromosomal regions are shown with the location of annotated protein-coding genes (blue boxes), antisense RNAs (red), and intergenic sRNA genes (yellow). The color-coded bars represent signals derived from individual microarray probes. The scale for the microarray signal intensities is given at the left y-axis. All probes for the same RNA feature are connected by lines.
Additional file 1: Table S1. of Galectin 3: association to neurohumoral activity, echocardiographic parameters and renal function in outpatients with heart failure
Creators: name: Gaborit, Freja
name: Bosselmann, Helle
name: Kistorp, Caroline
name: Iversen, Kasper
name: Kumler, Thomas
name: Gustafsson, Finn
name: Goetze, Jens
name: Sölétormos, György
name: Tønder, Niels
name: Schou, Morten
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Marine Biology
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Plasma concentration of Galectin-3 according to Age, NYHA class and chronic kidney disease (CKD). (DOCX 13 kb)
Additional file 3: Figure S1. of Genomic ancestry estimation quantifies use of wild species in grape breeding
Creators: name: ZoĂŤ Migicovsky
name: Sawler, Jason
name: Money, Daniel
name: Eibach, Rudolph
name: Miller, Allison
name: Luby, James
name: Jamieson, Andrew
name: Velasco, Dianne
name: Kintzel, Sven Von
name: Warner, John
name: WĂźhrer, Walter
name: Brown, Patrick
name: Myles, Sean
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Marine Biology
subject: Plant Biology

description: Distance (kb) between filtered SNPs used for ancestry estimation. (PDF 96 kb)
Triple Nexus in Fragile Contexts: Next Steps
Creators: name: Brugger, Fritz
name: Holliger, Joane
name: Mason, Simon Jonas Augusto
Publisher: name: ETH Zurich
Year: 2022
Subjects: Triple nexus
Humanitarianism
peace
development
third-party

description: CSS Policy Perspectives, 10 (9)
description: ISSN:2296-6471
Additional file 4: Figure S2. of Genomic ancestry estimation quantifies use of wild species in grape breeding
Creators: name: ZoĂŤ Migicovsky
name: Sawler, Jason
name: Money, Daniel
name: Eibach, Rudolph
name: Miller, Allison
name: Luby, James
name: Jamieson, Andrew
name: Velasco, Dianne
name: Kintzel, Sven Von
name: Warner, John
name: WĂźhrer, Walter
name: Brown, Patrick
name: Myles, Sean
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology

description: Distribution of IBS values for expected replicates (orange), siblings (blue) and parent/offspring (red). (A) Histogram of IBS values calculated in hybrid samples only. Dotted lines are drawn at values for expected first degree relationships as well as replicates. (B) Expected relationships between cultivars with their associated IBS values. (PDF 264 kb)
Lundomys Voss & Carleton 1993
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Cricetidae
Lundomys

description: Lundomys Voss & Carleton 1993
Monotypic genus represented by L. molitor (Winge 1887), records of extant specimens were from southern South America, predominantly from Uruguay (Voss & Carleton 1993; Prado & Percequillo 2013).
Karyotype: 2n = 52 and FN = 58. Autosomal complement: four metacentric pairs (three large and one small), and 21 acrocentric pairs medium to small decreasing in size. Sex chromosomes: X, a medium submetacentric; Y, a small metacentric. Heteromorphism of the X chromosome was reported due to different sizes of short arm. C-banding metaphases exhibited blocks of constitutive heterochromatin on the pericentromeric region of all autosomal pairs, but was almost absent on the three large metacentric pairs. The X chromosome presented a pericentromeric heterochromatic block. The Y chromosome presented a whole heterochromatic arm. G-banding was also performed (Freitas et al. 1983, pp. 14, Fig. 1).
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 29, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Additional file 3: of High acceptability of a newly developed urological practical skills training program
Creators: name: Vries, Anna De
name: Scheltus Van Luijk
name: Scherpbier, Albert
name: Hendrikx, Ad
name: Koldewijn, Evert
name: Wagner, Cordula
name: Schout, Barbara
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology

description: Content basic laparoscopy training. (PDF 6710 kb)
Finding equivalence: a novel tool to investigate the effect size at which two groups are statistically equivalent
Creators: name: Tobler, Samuel
Publisher: name: ETH Zurich
Year: 2022
Subjects: subject: Equivalence Testing
subject: Statistics
subject: FOS: Mathematics
subject: Education
subject: Learning Sciences
subject: Application

description: In the learning sciences and other disciplines, researchers frequently face the challenge of deciding whether it makes sense from a statistical standpoint to combine the data set of two groups as different cohorts for subsequent analyses or not. Further, especially for studies conducted in educational settings and naturalistic environments, small effects and non-significant differences are common (Bakker et al., 2019). Therefore, it is necessary to be able to profoundly judge whether two groups are different or equivalent within a given set of threshold values and statistical assumptions.
Whereas a non-significant difference is often interpreted as a reason to combine two data sets or to conclude that the groups of interest perform similarly, the absence of significant differences does not indicate equivalence of the groups (Edelsbrunner & Thurn, 2018). Meanwhile, research advocating equivalence testing has gained more attention over the last years (Lakens et al., 2018; Mehler et al., 2019). However, it remains the researcher’s decision to choose an appropriate effect size of equivalence and how to report this result. Here, I propose a new approach and ready-to-use online application to determine the precise effect size at which two groups of interest are equivalent. Based on the TOSTER package (Lakens, 2017), which aims to inform about whether two groups are statistically equivalent or not, this hereby described and novel tool accurately calculates the effect size at statistical equivalence. In other words, instead of a dichotomous judgment of equivalence based on a priori set default values including the effect size below which we would assume statistical equivalence (as by applying the TOSTER package), the presented tool does not require any effect size threshold values. Instead, it yields the exact effect size estimate at which the two groups of interest are equivalent, allowing the researcher to make a more informed decision about whether the groups should be combined for further analyses or not. Moreover, it enables the researcher to consistently and unbiasedly report their findings, also in relation to priorly reported studies as suggested by Evans and Yuan (2022), based on which they can ground their decision of combining groups or not or interpret their results.
The online tool is available at https://samueltobler.shinyapps.io/findingequivalence.
Melanomys Thomas 1902
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Melanomys

description: Melanomys Thomas 1902
The genus Melanomys comprises six species, M. caliginosus (Tomes 1860), M. chrysomelas (Goldman 1918), M. columbianus (Allen 1899), M. idoneus (Goldman 1918), M. robustulus (Thomas 1914), and M. zunigae (Sanborn 1949). The species of the genus were found in lowland or lower montane forested habitats in Central America from Honduras to Panama, and south to north-western South America, in Colombia, Ecuador, Peru, and westernmost Venezuela (Musser & Carleton 2005; Hanson & Bradley 2008; Prado & Percequillo 2013; Weksler & Lóss 2015). There was cytogenetic information available only for two species, M. caliginosus and M. chrysomelas.
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 29, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Additional file 1: of High acceptability of a newly developed urological practical skills training program
Creators: name: Vries, Anna De
name: Scheltus Van Luijk
name: Scherpbier, Albert
name: Hendrikx, Ad
name: Koldewijn, Evert
name: Wagner, Cordula
name: Schout, Barbara
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Questionnaire. (PDF 97 kb)
Melanomys caliginosus
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Melanomys
Melanomys caliginosus

description: Melanomys caliginosus
Karyotype: 2n = 58, G-banding karyotype was performed by Baker et al. (1983).
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 29, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Additional file 2: of High acceptability of a newly developed urological practical skills training program
Creators: name: Vries, Anna De
name: Scheltus Van Luijk
name: Scherpbier, Albert
name: Hendrikx, Ad
name: Koldewijn, Evert
name: Wagner, Cordula
name: Schout, Barbara
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy

description: Topic list semi-structured focus group interviews. (PDF 75 kb)
Automated Detection of GDPR Violations in Cookie Notices Using Machine Learning
Creators: name: Bouhoula, Ahmed
Publisher: name: ETH Zurich
Year: 2022

description: Privacy regulations such as the General Data Protection Regulation require websites to inform EU-based users of the collection of their data and to request their consent to use non-essential cookies. This led to a global adaptation of cookie notices. Several studies showed that websites’ implementation of cookie notices tends to violate these regulations. However, most of these studies focused on a limited subset of websites, detected only simple violations using prescribed patterns, or restricted their analysis to only the first layer of cookie notices. This master’s thesis addresses these limitations. Our method automatically navigates through cookie notices using several heuristics, extracts their text, observes declared processing purposes and available consent options with Natural Language Processing, and analyzes websites’ cookies. We find that 47% of websites are highly susceptible of collecting users’ data despite negative consent, and that around 61% of cookie notices do not offer users the option to opt-out of consent.
SHOSHI MUKHI DAS (1868-1921), missionary in the Calvinistic Methodist Foreign Mission in India
Creators: name: Singer, Rita
Publisher: name: Bydbach: Literature, History, Heritage
Year: 2025
Subjects: subject: History of religion
subject: Bangladesh--Sylhet District
subject: Bangladesh--Sylhet
subject: Welsh Calvinistic Methodist Church

description: This is the unabridged original draft of a biographical article about SHOSHI MUKHI DAS (1868-1921), missionary in the Calvinistic Methodist Foreign Mission in India who spent a prominent time of her life in Wales, ahead of its publication in the Dictionary of Welsh Biography (https://biography.wales/article/s15-DASS-MUK-1868).
Melanomys chrysomelas
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Muridae
Melanomys
Melanomys chrysomelas

description: Melanomys chrysomelas
Karyotype: 2n = 56 and FN = 58. Autosomal complement: two small metacentric pairs, and 25 acrocentric pairs (one conspicuously large and 24 medium to small decreasing in size). Sex chromosomes: X, a large subtelocentric (the largest chromosome of the complement); Y, a medium subtelocentric (Gardner & Patton 1976, pp. 10, Fig. 4B).
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on page 29, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
CARACTERISATIONS HYDROCHIMIQUE ET BIOLOGIQUE DES EAUX SOUTERRAINES PENDANT LA SAISON PLUVIEUSE EN ZONE URBANISEE DES QUARTIERS EKOMBITE ET NEW-BELL, EBOLOWA - CAMEROUN
Creators: name: Théodore Arnaud EBANDA OBOUGOU
name: François Yannick ATEBA
name: Diane NDONGO MINDONGO
name: Guillaume Ewodo Mboudou
name: André Firmin BON
name: Auguste OMBOLO
Publisher: name: Zenodo
Year: 2024

description: Le présent travail a pour objectif, la caractérisation physico-chimique et bactériologique des eaux souterraines des quartiers Ekombité et New-Bell à Ebolowa, dans la Région du Sud Cameroun. Vingt-deux (22) ouvrages hydrauliques donc seize (16) puits et six (06) forages ont été retenus et le prélèvement des échantillons d’eau a été fait en mi-octobre 2022. Les résultats ont montré que les valeurs en teneurs des paramètres physico-chimiques des eaux souterraines analysés, étaient presque conformes aux normes prescrites par l’OMS, exceptés la température avérée anormale avec une moyenne de 24,56°C, le pH, avec pour valeur moyenne 6,32 dans les échantillons d’eaux de puits et les nitrites (donc la concentration maximale est de 0.60 mg/l), présentent dans certains échantillons d’eaux de puits des valeurs supérieures à la norme recommandée par L’OMS 2017. Ces eaux sont moyennement acides (5,60 ≤ pH ≤ 7,10), avec une minéralisation peu accentuée dans les eaux des puits (40,00 μS/cm ≤ EC ≤ 484,00 μS/cm) et faiblement accentuée dans les eaux de forage (18,00 μS/cm ≤ EC ≤ 152 μS/cm). Les résultats ont été traités à partir d’une méthode hydrochimie qui utilise les diagrammes de Piper, et des méthodes statistiques classique avec le logiciel XLSTAT ainsi que des approches classiques et numériques basées sur la détermination de l’indice de qualité de l’eau et de l’indice de pollution métallique. Quatre types de faciès hydrochimiques ont été identifiés mais les plus dominants sont chloruré et magnésien (45,45%) et chloruré sodique et potassique (40,91%). L’indice de qualité de l’eau montre que les eaux souterraines sont bonnes à 90,91% et mauvaise à 9,09%. L’analyse bactériologique révèle que les eaux de puits sont de mauvaise qualité avec des teneurs minimales et maximales en coliformes et streptocoques fécaux qui oscillent respectivement entre 16,00 à 130,00 UFC/100ml et entre 38,00 à 255,00 UFC/100ml. Les eaux de forages ne présentent aucun risque lié à ces bactéries.
Additional file 2: of A meta-review of stress, coping and interventions in dementia and dementia caregiving
Creators: name: K. Gilhooly
name: M. Gilhooly
name: M. Sullivan
name: A. McIntyre
name: L. Wilson
name: E. Harding
name: R. Woodbridge
name: S. Crutch
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Biotechnology
subject: Developmental Biology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Table of characteristics of included systematic reviews in meta-analysis. This file shows AMSTAR quality rating, authorship, year of publication, the focus of each review, the search strategy used, whether or not a meta-analysis was conducted, the number of papers included and excluded in each review, and the conclusions drawn from each review. (DOCX 531 kb)
SOS Degree Reduction with Applications to Clustering and Robust Moment Estimation
Creators: name: Tiegel, Stefan
Publisher: name: ETH Zurich
Year: 2020
Subjects: Data Structures and Algorithms (cs.DS)
Machine Learning (cs.LG)
Machine Learning (stat.ML)

description: Understanding the exact complexity and giving strong algorithmic guarantees for estimation and inference problems is one of the key challenges currently faced in computer science, especially in the high-dimensional setting. Over the past few years a flurry of work has surfaced which harnesses results and techniques previously applied to classical problems in theoretical computer science to attack these challenges. One particularly promising candidate is the use of the so-called sum-of-squares hierarchy which is a powerful tool predominantly used in the study of approximation algorithms.
It turns out that a great deal of the essential facts underlying many estimation problems, e.g., distributional assumptions, can be phrased as polynomial (in-)equalities. The sum-of-squares hierarchy is built on so-called sum-of-squares proofs which allow one to reason about these inequalities. Furthermore, they can be algorithmically exploited to yield efficient algorithms, i.e., running in time at most polynomial in the size of the input. The exact running time is mostly determined by the degree used in these inequalities and hence, reducing this as much as possible is key to finding fast algorithms.
In this thesis, we develop a general approach to significantly reduce the degree of sum-of-squares proofs by introducing new variables. To illustrate the power of our approach, we use it to speed up previous algorithms based on sum-of-squares for two important estimation problems, clustering and robust moment estimation. The resulting algorithms have significantly faster running times than the previous state-of-the-art. We further show that some of our guarantees are information-theoretically optimal for the cases we consider. Moreover, we give an improved version of quite a general theorem given by Raghavendra et al. allowing us to easily turn the existence of sum-of- squares proofs into efficient estimation algorithms. Roughly speaking, given a sample of n points in dimensions d, our algorithms can exploit order-l moments in time d^O(l) * n^O(1), whereas a naive implementation requires time (d * n)^O(l). Since for the aforementioned applications, the typical sample size is d^Θ(l), our framework improves running times from d^O(l2) to d^O(l). We hope that our approach can inform the design of future algorithms based on sum-of-squares.
Additional file 1: of A meta-review of stress, coping and interventions in dementia and dementia caregiving
Creators: name: K. Gilhooly
name: M. Gilhooly
name: M. Sullivan
name: A. McIntyre
name: L. Wilson
name: E. Harding
name: R. Woodbridge
name: S. Crutch
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: PRISMA checklist. This file is a PRISMA 2009 Checklist for the current study. PRISMA stands for Preferred Reporting Items for Systematic Reviews and Meta-Analyses. It is an evidence-based minimum set of items for reporting in systematic reviews and meta-analyses. The checklist provides an indication of where items expected to be in a systematic literature review can be found in the text of the main paper. (DOC 62 kb)
Microakodontomys Hershkovitz 1993
Creators: name: Moreira, Camila Do Nascimento
name: Ventura, Karen
name: Percequillo, Alexandre Reis
name: Yonenaga-Yassuda, Yatiyo
Publisher: name: Zenodo
Year: 2020
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Mammalia
Rodentia
Cricetidae
Microakodontomys

description: Microakodontomys Hershkovitz 1993
Monotypic genus represented by M. transitorius (Hershkovitz 1993), that inhabits the fringe zone between open grassland and bordering scrubland of the Brazilian Cerrado (Hershkovitz 1993; Prado & Percequillo 2013; Paresque & Hanson 2015).
Karyotype: 2n = 38 and FN = 46. Autosomal complement: five small pairs of biarmed elements, and 13 acrocentric pairs decreasing in size. Sex chromosomes: X, a large submetacentric; Y, a small submetacentric, as mentioned by Paresque & Hanson (2015).
description: Published as part of Moreira, Camila Do Nascimento, Ventura, Karen, Percequillo, Alexandre Reis & Yonenaga-Yassuda, Yatiyo, 2020, A review on the cytogenetics of the tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae), with the description of new karyotypes, pp. 1-111 in Zootaxa 4876 (1) on pages 29-30, DOI: 10.11646/zootaxa.4876.1.1, http://zenodo.org/record/4423612
Automatically Generating Memory Safety Certificates for Rust Programs
Creators: name: Huber, Pascal
Publisher: name: ETH Zurich
Year: 2022

description: The Rust programming language attempts to be both resource-efficient and memory-safe, two properties which hardly any other programming language manages to combine. The borrow checker of the compiler ensures memory safety but is itself a nontrivial program and does not provide any formal proof of correctness. RustBelt tackles this issue by defining a logic to create correctness proofs for Rust programs, verified by the Coq proof assistant, which has a much smaller codebase. However, creating proofs that certify memory safety using RustBelt is a difficult task and has to be done manually for every Rust program. To solve this problem, we implemented the relevant RustBelt rules in the verification language Viper for some of the most important language features of Rust, using the information provided by the experimental borrow checker, Polonius. While further work is necessary to support more real-world applications, we have shown that automatically generating memory safety certificates for Rust programs by modelling the RustBelt rules in Viper is a feasible and sensible approach.
Additional file 1: of Factors contributing to chronic ankle instability: a protocol for a systematic review of systematic reviews
Creators: name: Thompson, Cassandra
name: Schabrun, Siobhan
name: Romero, Rick
name: Bialocerkowski, Andrea
name: Marshall, Paul
Publisher: name: Figshare
Year: 2016
Subjects: Medicine
Biotechnology
Science Policy
Computational Biology

description: PRISMA-P (Preferred Reporting Items for Systematic review and Meta-Analysis Protocols) 2015 checklist: recommended items to address in a systematic review protocol*. Completed PRISMA-P checklist outlining how each point has been addressed in the manuscript. (PDF 162 kb)
Additional file 3: of Factors contributing to chronic ankle instability: a protocol for a systematic review of systematic reviews
Creators: name: Thompson, Cassandra
name: Schabrun, Siobhan
name: Romero, Rick
name: Bialocerkowski, Andrea
name: Marshall, Paul
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Developmental Biology
subject: Science Policy

description: Modified R-AMSTAR checklistâ  quality assessment for systematic reviews of observational studies (adapted from R-AMSTAR). Modified R-AMSTAR tool used to appraise the quality of each systematic review. (PDF 195 kb)
Additional file 2: of Factors contributing to chronic ankle instability: a protocol for a systematic review of systematic reviews
Creators: name: Thompson, Cassandra
name: Schabrun, Siobhan
name: Romero, Rick
name: Bialocerkowski, Andrea
name: Marshall, Paul
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Biotechnology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Search strategies. Specific search strategy used for the five databases included in the review, comprising of both keywords and Mesh terms. (PDF 74.3 kb)
Characterization of Aerodynamic Effects and Unbalance in Rotor Dynamics Whirl Orbit
Creators: name: Stoop, Fabian
name: Mayr, Josef
name: Wegener, Konrad
Publisher: name: ETH Zurich
Year: 2022

description: Mobility and artificial intelligence are the key drivers for the semiconductor industry. The requirements for high-performance chips are constantly increasing and technologies, such as ultra-precision machining, are necessary for this value chain of manufacturing. The exact bearing of rotating axes is one of the main tasks to produce precision workpieces. The influences that prevent these axes from perfect rotation originate from unbalance, gravity, dynamic elasticities of air in the bearing, and process forces. This paper aims to characterize these disturbances according to their origin and to describe the motion error. In this way, Moore's law can go on in chip manufacturing.
Gahrliepia (Gahrliepia) kaloloensis Goff 1982
Creators: name: Nielsen, David H.
name: Robbins, Richard G.
name: Rueda, Leopoldo M.
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Trombiculidae
Gahrliepia
Gahrliepia kaloloensis

description: Gahrliepia (Gahrliepia) kaloloensis Goff, 1982 g:
AUS
description: Published as part of Nielsen, David H., Robbins, Richard G. & Rueda, Leopoldo M., 2021, Annotated world checklist of the Trombiculidae and Leeuwenhoekiidae (1758 - 2021) (Acari: Trombiculoidea), with notes on nomenclature, taxonomy, and distribution, pp. 1-243 in Zootaxa 4967 (1) on page 23, DOI: 10.11646/zootaxa.4967.1.1, http://zenodo.org/record/4745510
Additional file 7: Figure S7. of Autophagy capacity and sub-mitochondrial heterogeneity shape Bnip3-induced mitophagy regulation of apoptosis
Creators: name: Sehyo Choe
name: Hamacher-Brady, Anne
name: Brady, Nathan
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer

description: ROS degradation versus production comparison. Keeping ROS degradation rate constant, variation in non-mitochondrial ROS production rates in Bnip3 WT with A 5-fold decrease compared to control in B and C 4-fold increase. Results show mitochondrial mitophagy decisions (blue histograms) and consequent apoptosis activity indicated by cytochrome c release (red). Simulations of varying ROS degradation rates show little impact on D mitophagy (blue histograms) and E cytochrome c release. Sample size was 50 runs for each condition. Tables show statistics (at tâ  =â  100). (PDF 281 kb)
Additional file 5: Figure S5. of Autophagy capacity and sub-mitochondrial heterogeneity shape Bnip3-induced mitophagy regulation of apoptosis
Creators: name: Sehyo Choe
name: Hamacher-Brady, Anne
name: Brady, Nathan
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Hematology
subject: Plant Biology

description: A Experimental validation of fragmented mitochondria in stressed cells, underlying model assumption of no mitochondrial fission/fusion events. HeLa cells were co-transfected 24 h with indicated combinations of mito-GFP, GFP-Bnip3, and RFP-Bcl-xL. (Fused mitochondria) Individual expression of Bcl-xL (top) or Bnip3 (middle) show elongated mitochondrial structure, (Fragmented mitochondria) Co-expression of Bcl-xL and Bnip3 exhibits highly fragmented mitochondria and co-localization (yellow). B HeLa cells were co-transfected 24 h with GFP-GATE16 and RFP-Bnip3 2SE. Projections of time lapse images for autophagosomes (Gate 16) and mitochondria (Bnip3) depict organelle mobility. After treatment (see Methods), images were taken in 30 s increments for 30 min, and overlaid. The white regions for autophagosomes indicate immobility, while the wide dispersal for mitochondria is indicative of high mobility. (PDF 3157 kb)