cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Genetic Contribution to the Heterogeneity of Major Depressive Disorder: Evidence From a Sibling-Based Design Using Swedish National Registers
Creators: name: Dalman C
name: Larsson H
name: Sullivan P.F
name: Pasman J
name: Kuja-Halkola R
name: Nguyen T.-D
name: Kowalec K
name: Lu Y
name: Lichtenstein P
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 2023

description: OBJECTIVE: Major depressive disorder (MDD) is highly heterogeneous. Standard typology partly captures the disorder's symptomatic heterogeneity, although whether it adequately captures etiological heterogeneity remains elusive. The aim of this study was to investigate the genetic characterization of MDD heterogeneity. METHODS: Using Swedish patient register data on 1.5 million individuals, the authors identified 46,255 individuals with specialist-diagnosed MDD. Eighteen subgroups were identified based on nine comparison groups defined by clinical and psychosocial features, including severity, recurrence, comorbidities, suicidality, impairment, disability, care unit, and age at diagnosis. A sibling-based design and classic quantitative genetic models were applied to estimate heritability of MDD subgroups and genetic correlations between subgroups. RESULTS: Estimates of heritability ranged from 30.5% to 58.3% across subgroups. The disabled and youth-onset subgroups showed significantly higher heritability (55.1%-58.3%) than the overall MDD sample (45.3%, 95% CI=43.0-47.5), and the subgroups with single-episode MDD and without psychiatric comorbidity showed significantly lower estimates (30.5%-34.4%). Estimates of genetic correlations between the subgroups within comparison groups ranged from 0.33 to 0.90. Seven of nine genetic correlations were significantly smaller than 1, suggesting differences in underlying genetic architecture. These results were largely consistent with previous work using genomic data. CONCLUSIONS: The findings of differential heritability and partially distinct genetic components in subgroups provide important insights into the genetic heterogeneity of MDD and a deeper etiological understanding of MDD clinical subgroups.
Building Bridges to Success Navigating Parent and Community Engagement in Education by Ryan James Whitehouse
Creators: name: Whitehouse, Ryan James
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 390307
subject: Teacher education and professional development of educators

description: Parent and community engagement plays a pivotal role in creating a vibrant and successful educational environment. When schools, parents, and communities collaborate, students benefit from a more enriching and supportive learning experience. In this article, we explore the importance of parent and community engagement, its impact on student success, and strategies for fostering meaningful partnerships. Written by Ryan James Whitehouse.
Genetic heterogeneity and subtypes of major depression
Creators: name: Hägg S
name: Nguyen T.-D
name: Cai N
name: Xiong Y
name: Kuja-Halkola R
name: Kowalec K
name: Dalman C
name: Lu Y
name: Sullivan P.F
name: Harder A
Publisher: name: Springer Nature
Year: 2022

description: Major depression (MD) is a heterogeneous disorder; however, the extent to which genetic factors distinguish MD patient subgroups (genetic heterogeneity) remains uncertain. This study sought evidence for genetic heterogeneity in MD. Using UK Biobank cohort, the authors defined 16 MD subtypes within eight comparison groups (vegetative symptoms, symptom severity, comorbid anxiety disorder, age at onset, recurrence, suicidality, impairment, and postpartum depression; N ~ 3000–47000). To compare genetic component of these subtypes, subtype-specific genome-wide association studies were performed to estimate SNP-heritability, and genetic correlations within subtype comparison and with other related disorders/traits. The findings indicated that MD subtypes were divergent in their SNP-heritability, and genetic correlations both within subtype comparisons and with other related disorders/traits. Three subtype comparisons (vegetative symptoms, age at onset, and impairment) showed significant differences in SNP-heritability; while genetic correlations within subtype comparisons ranged from 0.55 to 0.86, suggesting genetic profiles are only partially shared among MD subtypes. Furthermore, subtypes that are more clinically challenging, e.g., early-onset, recurrent, suicidal, more severely impaired, had stronger genetic correlations with other psychiatric disorders. MD with atypical-like features showed a positive genetic correlation (+0.40) with BMI while a negative correlation (−0.09) was found in those without atypical-like features. Novel genomic loci with subtype-specific effects were identified. These results provide the most comprehensive evidence to date for genetic heterogeneity within MD, and suggest that the phenotypic complexity of MD can be effectively reduced by studying the subtypes which share partially distinct etiologies.
Exponentiation of soft photons in a process involving hard photons
Creators: name: Summers, D. J.
Publisher: name: arXiv
Year: 1994
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We present a simple method of removing the singularities associated with soft photon emission to all orders in perturbation theory through exponentiation, while keeping a consistent description of hard photon emission. We apply this method to the process e+ e- --> mu+ mu- + n photons where we include both Z^0 and photon exchange and retain the muon mass dependence. The photonic radiation is allowed to be radiated off any charged leg, and so we include all initial and final state radiation, as well as all interference effects. The effect of exponentiation is to suppress soft photon emission over the cross-section you would obtain from working at strictly leading order. We also show how one would extend the method to treat the collinear singularity; and remove the associated leading mass logarithms.
description: 27 pages + 8 figures, plain TeX. Major changes from original submission. Available from ftp://phenom.physics.wisc.edu/pub/preprints/1995/madph-95-833.ps.Z
A note on local BRST cohomology of Yang-Mills type theories with free abelian factors
Creators: name: Barnich, Glenn
name: Boulanger, Nicolas
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We extend previous work on antifield dependent local BRST cohomology for matter coupled gauge theories of Yang-Mills type to the case of gauge groups that involve free abelian factors. More precisely, we first investigate in a model independent way how the dynamics enters the computation of the cohomology for a general class of Lagrangians in general spacetime dimensions. We then discuss explicit solutions in the case of specific models. Our analysis has implications for the structure of characteristic cohomology and for consistent deformations of the classical models, as well as for divergences/counterterms and for gauge anomalies that may appear during perturbative quantization.
description: 31 pages
MobiDataLab D4.6 Data Access Services (V2)
Creators: name: LAUER, Johannes
name: NGUYEN, Huy Minh
name: MECHYAKHA, Hiba
name: PLOT, Benjamin
name: DJELOUAT, Maroua-Dorsaf
name: OBREGON-GONZALEZ, Renée
Publisher: name: Zenodo
Year: 2023
Subjects: data access
service access
QGIS
CKAN
GeoNetwork
Navitia
API
OSM
GeoDataFrame
MetaSearch
metadata

description: This is the second version of the prototype integrating new data access services and data channelsdeveloped in WP4 and tested in the Living Lab instances. The deliverable is a demonstrator for theprovided services. This document provides an overview of the demonstrators and further details onthe components. A service catalogue with self-registration options is one of the fundamentaldevelopments. Further, access options via Jupyter Notebooks, QGIS and Navitia are described andtheir interaction with the transport cloud and external data and services are demonstrated. Thedocument is written for practitioners in the mobility ecosystem to get hands-on experience withmobility data sets. Further it is of interest for decision makers to demonstrate the possibilities on howmobility data and services can support the solution of challenges in mobility data depending ondomains.
Enzymatic Production Of Chiral Non-Canonical Amino Acids With Decarbamoylating Enzymes
Creators: name: Lohmann, Carolin Sabine
Publisher: name: Karlsruhe
Year: 2019
Subjects: β-amino acids
enzymes
catalysis

description: Chirale nicht-kanonische Aminosäuren, wie β-Aminosäuren, existieren in unzähligen Varianten. Die Entwicklung eines geeigneten Verfahrens zu ihrer biotechnologischen Herstellung ist zwingend erforderlich, da sie als Bausteine von Medikamenten diesen neue biologische Eigenschaften verleihen. Ihre chemische Synthese ist oft aufwändig und bietet viele weitere Nachteile im Vergleich zu biotechnologischen Verfahren. Durch enantioselektive Enzyme kann beispielsweise eine 100 %-ige Ausbeute eines Enantiomers erzielt werden. Der etablierte Hydantoinaseprozess wird industriell erfolgreich zur enzymatischen Synthese nicht-kanonischer D-α-Aminosäuren verwendet. Ziel dieser Arbeit war es, neue Enzyme für einen modifizierten Hydantoinaseprozess zur Herstellung optisch reiner β3-Aminosäuren zu identifizieren. Dafür wurden mehrere Enzymsubstrate, wie beispielsweise N-carbamoyl-β-homo-serin oder N-carbamoyl-β-phenylalanin (NCβPhe) chemisch synthetisiert. Passende analytische Assays und HPLC-Methoden wurden etabliert, um den enzymatischen Substratabbau und Produktaufbau zu verfolgen. Um neue Enzyme zu identifizieren, die N-carbamoyl-β- Aminosäuren zur entsprechenden β-Aminosäure katalysieren, wurden 200 Wildtyp-Stämme der institutseigenen Mikroorganismenstammsammlung auf Wachstum auf NCβPhe als einziger Stickstoffquelle untersucht. Für einige Stämme konnte ein geringes Wachstum beobachtet werden. Mit Hilfe von bioinformatischen Sequenzvergleichen konnten sieben Gene aus drei verschiedene Organismen (Burkholderia phytofirmans, Pseudomonas aeruginosa und Pseudomonas oleovorans) identifiziert werden, für die eine putative Synthese von β-Aminosäure angenommen wurde. Diese Gene wurden kloniert und rekombinant in Escherichia coli exprimiert. Zwar zeigte keines der Enzyme einen Umsatz von NCβPhe, allerdings konnte erstmals die enzymatische Synthese von L-β-Homo-alanin und L-β-Homo- serin sowie anderen nicht-kanonischen α-Aminosäuren gezeigt werden. Zusätzlich wurden die Aktivzentren dieser sieben neuen Enzyme mit Hilfe verschiedener in silico Methoden prognostiziert. Des Weiteren wurden die Enzyme durch in vitro und in silico Experimente charakterisiert und klassifiziert. Im Verlauf der Arbeit wurden fünf weitere bereits aus der Literatur bekannte decarbamoylierende Enzyme aus vier unterschiedlichen Enzymklassen untersucht. Für diese Enzyme konnten bisher nicht bekannte klassenübergreifende Aktivitäten detektiert werden. Außerdem konnten durch Katalyse dieser Enzyme erstmals die β3-Aminosäuren L- und D-β- Homo-Alanin, L- und D-β-Homo-Serin, L-β-Homo-Methionin, sowie die nicht-kanonischen α-Aminosäuren β-2-Thienylalanin, L-α-Neopentylglycin biokatalytisch hergestellt werden. Durch Kombination von Ergebnissen aus in silico Ligand-Dockings und in vitro Experimenten konnte eine Affinität aller Enzyme gegenüber Substraten mit polaren oder geladenen Seitenketten prognostiziert werden.
Additional file 1: of Strengthening mental health and research training in Sub-Saharan Africa (SMART Africa): Uganda study protocol
Creators: name: Ssewamala, Fred
name: Ozge Sensoy Bahar
name: McKay, Mary
name: Hoagwood, Kimberly
name: Keng-Yen Huang
name: Pringle, Beverly
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Standard Protocol Items: Recommendations for Interventional Trials (SPIRIT) 2013 Checklist. (DOC 141 kb)
Baryon Magnetic Moments in the 1/N Expansion
Creators: name: Jenkins, Elizabeth
name: Manohar, Aneesh V.
Publisher: name: arXiv
Year: 1994
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Relations among the baryon magnetic and transition magnetic moments are derived in the $1/N_c$ expansion. Relations which hold to ALL ORDERS in $SU(3)$ breaking and to leading and first subleading orders in the $1/N_c$ expansion are obtained. Additional relations are found which are valid up to $SU(3)$ breaking at first subleading order in the $1/N_c$ expansion. The experimental accuracy of these relations fits the pattern predicted by the $1/N_c$ expansion. The predictions of the $1/N_c$ expansion are compared in detail with those of the non-relativistic quark model. The $1/N_c$ expansion explains why certain quark model relations work to greater accuracy than others.
description: (15 pages, 1 figure. Uses harvmac and uufiles), UCSD/PTH 94-10
Additional file 2: of Uranotaenia unguiculata Edwards, 1913 are attracted to sound, feed on amphibians, and are infected with multiple viruses
Creators: name: Camp, Jeremy
name: Bakonyi, Tamás
name: Soltész, Zoltán
name: Zechmeister, Thomas
name: Nowotny, Norbert
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Table S1. Primers used to generate a nearly full-length sequence of a newly-described Alphamesonivirus 1 (Mesoniviridae) in Uranotaenia unguiculata mosquitoes found in Austria. (DOCX 20 kb)
Rich Cluster and Non-Cluster Radio Galaxies & the (P,D) Diagram for a Large Number of FR I and FR II Sources
Creators: name: Ledlow, M. J.
name: Owen, F. N.
name: Eilek, J. A.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present a comparison of the optical and radio properties of radio sources inside and outside the cores of rich clusters from combined samples of more than 380 radio sources. We also examine the nature of FR I and FR II host galaxies, and in particular, we illustrate the importance of selection effects in propagating the misconception that FR I's and FR II's are found in hosts of very different optical luminosity. Given the large sample size, we also discuss the power-size (P,D) distributions as a function of optical luminosity.
description: to appear in Life Cycles of Radio Galaxies, ed. J. Biretta et al., New Astronomy Reviews; 6 pages, including 2 figures
ALMA Images of the Host Cloud of the Intermediate-mass Black Hole Candidate CO-0.40-0.22$^* : No Evidence for Cloud-Black Hole Interaction, but Evidence for a Cloud-Cloud Collision
Creators: name: Tanaka, Kunihiko
Publisher: name: arXiv
Year: 2018
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: This paper reports a re-analysis of archival ALMA data of the high velocity (-width) compact cloud (HVCC) CO-0.40-0.22, which has recently been hypothesized to host an intermediate-mass black Hole (IMBH). If beam-smearing effects, difference in beam sizes among frequency bands, and Doppler shift due to the motion of the Earth are considered accurately, none of the features reported as evidence for an IMBH in previous studies are confirmed in the re-analyzed ALMA images. Instead, through analysis of the position--velocity structure of the HCN J=3-2 data cube, we have found kinematics typical of a cloud-cloud collision (CCC), namely, two distinct velocity components bridged by broad emission features with elevated temperatures and/or densities. One velocity component has a straight filamentary shape with approximately constant centroid velocities along its length but with a steep, V-shaped velocity gradient across its width. This contradicts the IMBH scenario but is consistent with a collision between two dissimilar-sized clouds. From a non-LTE analysis of the multi-transition methanol lines, the volume density of the post-shock gas has been measured to be $\gtrsim 10^6\ \mathrm{cm}^{-3}$, indicating that the CCC shock can compress gas in a short timescale to densities typical of star-forming regions. Evidence for star formation has not been found, possibly because the cloud is in an early phase of CCC-triggered star formation or because the collision is non-productive.
description: 14 pages, 14 figures, accepted for publication in the Astrophysical Journal
Genetic Influences on Longitudinal Trajectories of Cortical Thickness and Surface Area during the First 2 Years of Life
Creators: name: Xia, K
name: Shen, D
name: Cornea, E
name: Jha, S.C
name: Li, G
name: Schmitt, J.E
name: Styner, M
name: Girault, J.B
name: Gilmore, J.H
Publisher: name: Oxford University Press
Year: 2022

description: Genetic influences on cortical thickness (CT) and surface area (SA) are known to vary across the life span. Little is known about the extent to which genetic factors influence CT and SA in infancy and toddlerhood. We performed the first longitudinal assessment of genetic influences on variation in CT and SA in 501 twins who were aged 0-2 years. We observed substantial additive genetic influences on both average CT (0.48 in neonates, 0.37 in 1-year-olds, and 0.44 in 2-year-olds) and total SA (0.59 in neonates, 0.74 in 1-year-olds, and 0.73 in 2-year-olds). In addition, we found strong heritability of the change in average CT (0.49) from neonates to 1-year-olds, but not from 1- to 2-year-olds. Moreover, we found strong genetic correlations for average CT (rG = 0.92) between 1- and 2-year-olds and strong genetic correlations for total SA across all timepoints (rG = 0.96 between neonates and 1-year-olds, rG = 1 between 1- and 2-year-olds). In addition, we found CT and SA are strongly genetic correlated at birth, but weaken over time. Overall, results suggest a dynamic genetic relationship between CT and SA during first 2 years of life and provide novel insights into how genetic influences shape the cortical structure during early brain development.
Additional file 6 of Prognostic perspectives of PD-L1 combined with tumor-infiltrating lymphocytes, Epstein-Barr virus, and microsatellite instability in gastric carcinomas
Creators: name: Choi, Euno
name: Chang, Mee Soo
name: Byeon, Sun-ju
name: Jin, Heejin
name: Jung, Kyeong Cheon
name: Kim, Haeryoung
name: Lee, Kook Lae
name: Kim, Won
name: Park, Jin Hyun
name: Kim, Ki Hwan
name: Kim, Jin-Soo
name: Choi, In Sil
name: Han, Dong-Seok
name: Ahn, Hye Seong
name: Heo, Seung Chul
Publisher: name: figshare
Year: 2020
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 6: Supplemental Table 1. Correlation Between PD-L1 Expression and Tumor-Infiltrating Lymphocytes (TILs) in the Entire Cohort (N = 514)
Isochrones and Luminosity Functions for Old White Dwarfs
Creators: name: Richer, Harvey B.
name: Hansen, Brad
name: Limongi, Marco
name: Chieffi, Alessandro
name: Straniero, Oscar
name: Fahlman, Gregory G.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Using a new grid of models of cooling white dwarfs, we calculate isochrones and luminosity functions in the Johnson-Kron/Cousins and HST filter sets for systems containing old white dwarfs. These new models incorporate a non-grey atmosphere which is necessary to properly describe the effects of molecular opacity at the cool temperatures of old white dwarfs. The various functions calculated and extensively tabulated and plotted are meant to be as utilitarian as possible for observers so all results are listed in quantities that observers will obtain. The tables and plots developed should eventually prove critical in interpreting the results of HST's Advanced Camera observations of the oldest white dwarfs in nearby globular clusters, in understanding the results of searches for old white dwarfs in the Galactic halo, and in determining ages for star clusters of all ages using white dwarfs. As a practical application we demonstrate the use of these results by deriving the white dwarf cooling age of the old Galactic cluster M67.
description: 7 pages, 8 tables, accepted for publication in the Astrophysical Journal
Optimal preconditioners for systems defined by functions of Toeplitz matrices
Creators: name: Hon, Sean
Publisher: name: arXiv
Year: 2018
Subjects: subject: Numerical Analysis (math.NA)
subject: FOS: Mathematics
subject: 65F08, 65F10, 65F15, 15A16, 15B05

description: We propose several circulant preconditioners for systems defined by some functions $g$ of Toeplitz matrices $A_n$. In this paper we are interested in solving $g(A_n)\mathbf{x}=\mathbf{b}$ by the preconditioned conjugate method or the preconditioned minimal residual method, namely in the cases when $g(z)$ are the functions $e^{z}$, $\sin{z}$ and $\cos{z}$. Numerical results are given to show the effectiveness of the proposed preconditioners.
TeV Cherenkov Events as Bose-Einstein Gamma Condensations
Creators: name: Harwit, M.
name: Protheroe, R. J.
name: Biermann, P. L.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: The recent detection of gamma radiation from Mkn 501 at energies as high as 25 TeV suggests stringent upper bounds on the diffuse, far infrared, extragalactic radiation density. The production of electron-positron pairs through photon-photon collisions would prevent gamma photons of substantially higher energies from reaching us across distances of order 100 Mpc. However, coherently arriving TeV or sub-TeV gammas - Bose-Einstein condensations of photons at these energies - could mimic the Cherenkov shower signatures of extremely energetic gammas. To better understand such events, we describe their observational traits and discuss how they might be generated.
description: 12 pages, 2 figures, accepted for publication in Ap.J.(Lett.)
Genetic Influences on the Developing Young Brain and Risk for Neuropsychiatric Disorders
Creators: name: Groenewold, N.A
name: Rasmussen, J.M
name: O'Connor, T.G
name: Alex, A.M
name: Luo, S
name: Hankin, B.L
name: Styner, M.A
name: Gao, W
name: Ipser, J
name: Kapoor, S
name: Buss, C
name: Gaab, N
name: Gilmore, J.H
name: ENIGMA ORIGINs group
name: Knickmeyer, R
name: Kim, P
name: Davis, E.P
name: Skeide, M.A
name: Stein, D.J
name: Thompson, P.M
name: Wakschlag, L
name: Lin, W
name: Girault, J.B
name: Campos, G.D.L
name: Piven, J
name: Qiu, A
name: Grewen, K
name: Donald, K.A
name: Norton, E.S
name: Fair, D.A
Publisher: name: Elsevier Inc.
Year: 2023

description: Imaging genetics provides an opportunity to discern associations between genetic variants and brain imaging phenotypes. Historically, the field has focused on adults and adolescents; very few imaging genetics studies have focused on brain development in infancy and early childhood (from birth to age 6 years). This is an important knowledge gap because developmental changes in the brain during the prenatal and early postnatal period are regulated by dynamic gene expression patterns that likely play an important role in establishing an individual's risk for later psychiatric illness and neurodevelopmental disabilities. In this review, we summarize findings from imaging genetics studies spanning from early infancy to early childhood, with a focus on studies examining genetic risk for neuropsychiatric disorders. We also introduce the Organization for Imaging Genomics in Infancy (ORIGINs), a working group of the ENIGMA (Enhancing NeuroImaging Genetics through Meta-Analysis) consortium, which was established to facilitate large-scale imaging genetics studies in infancy and early childhood.
Dynamically Efficient Kinematics for Hyper-Redundant Manipulators
Creators: name: Xanthidis, Marios P.
name: Kyriakopoulos, Kostantinos J.
name: Rekleitis, Ioannis
Publisher: name: arXiv
Year: 2018
Subjects: subject: Robotics (cs.RO)
subject: FOS: Computer and information sciences

description: A hyper-redundant robotic arm is a manipulator with many degrees of freedom, capable of executing tasks in cluttered environments where robotic arms with fewer degrees of freedom are unable to operate. This paper introduces a new method for modeling those manipulators in a completely dynamic way. The proposed method enables online changes of the kinematic structure with the use of a special function; termed "meta-controlling function". This function can be used to develop policies to reduce drastically the computational cost for a single task, and to robustly control the robotic arm, even in the event of partial damage. The direct and inverse kinematics are solved for a generic three-dimensional articulated hyper-redundant arm, that can be used as a proof of concept for more specific structures. To demonstrate the robustness of our method, experimental simulation results, for a basic "meta-controlling" function, are presented.
description: Published in the 24th Mediterranean Conference on Control and Automation (MED-2016)
How good is the quenched approximation of QCD?
Creators: name: Golterman, Maarten F. L.
Publisher: name: arXiv
Year: 1994
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The quenched approximation for QCD is, at present and in the foreseeable future, unavoidable in lattice calculations with realistic choices of the lattice spacing, volume and quark masses. In this talk, I review an analytic study of the effects of quenching based on chiral perturbation theory. Quenched chiral perturbation theory leads to quantitative insight on the difference between quenched and unquenched QCD, and reveals clearly some of the diseases which are expected to plague quenched QCD. Uses jnl.tex and epsf.tex for figure 3. Figures 1 and 2 not included, sorry. Available as hardcopy on request.
description: 22 pages, Wash. U. HEP/94-62 (Forgotten set of macros now included, sorry.)
The Flavor of Cosmology
Creators: name: Lillard, Benjamin
name: Ratz, Michael
name: Tait, Tim M. P.
name: Trojanowski, Sebastian
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We discuss the cosmology of models in which the standard model Yukawa couplings depend on scalar field(s), often referred to as flavons. We find that thermal corrections of the flavon potential tend to decrease the Yukawa couplings, providing an important input to model-building. Working in the specific framework of Froggatt-Nielsen models, we compute the abundance of flavons in the early universe generated both via freeze-in and from coherent oscillations induced by thermal corrections to their potential, and discuss constraints on flavon models from cosmology. We find that cosmology places important constraints on theories containing flavons even for regions of parameter space inaccessible to collider searches.
description: 26 pages, 5 figures, 5 appendices
title: Mail à Martin Rottman, copie à Pierre Sonigo
Creators: name: Leibowitch, Jacques
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020

description: Source: http://www.calames.abes.fr/pub/ms/Calames-2019311113393092
Additional file 8 of Prognostic perspectives of PD-L1 combined with tumor-infiltrating lymphocytes, Epstein-Barr virus, and microsatellite instability in gastric carcinomas
Creators: name: Choi, Euno
name: Chang, Mee Soo
name: Byeon, Sun-ju
name: Jin, Heejin
name: Jung, Kyeong Cheon
name: Kim, Haeryoung
name: Lee, Kook Lae
name: Kim, Won
name: Park, Jin Hyun
name: Kim, Ki Hwan
name: Kim, Jin-Soo
name: Choi, In Sil
name: Han, Dong-Seok
name: Ahn, Hye Seong
name: Heo, Seung Chul
Publisher: name: figshare
Year: 2020
Subjects: subject: Immunology
subject: FOS: Clinical medicine

description: Additional file 8: Supplemental Table 3. Univariate and Multivariate Analyses in EBV-positive Gastric Carcinomas (n = 32) (corresponding to Fig. 4a & c)
Numerical Simulations and the Strength of the Electroweak Phase Transition
Creators: name: Csikor, F.
name: Fodor, Z.
name: Hein, J.
name: Jansen, K.
name: Jaster, A.
name: Montvay, I.
Publisher: name: arXiv
Year: 1994
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Numerical simulations are performed to study the finite temperature phase transition in the SU(2) Higgs model on the lattice. The strength of the first order phase transition is investigated by determining the latent heat and the interface tension on $L_t=2$ lattices. The values of the Higgs boson mass presently chosen are below 50 GeV. Our results are in qualitative agreement with two-loop resummed perturbation theory.
description: (Only a few minor changes compared to the original version.) 9 pages and 2 figures, DESY-94-088
MOESM7 of Understanding the potential bias of variance components estimators when using genomic models
Creators: name: Cuyabano, Beatriz
name: A. SĂ¸Rensen
name: SĂ¸Rensen, Peter
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 7. 95\% confidence intervals, based on 100 replicates, for the absolute bias of $$\hat{\hbox{h}}^{2}_{{\rm REML}}$$ h ^ REML 2 to $$\hbox{h}^{2}$$ h 2 . Genomic data consisted of QTL plus markers for 2000 completely unrelated individuals. The number of markers in the SNP data varied from 0 to 19,900, and 100 QTL were used to simulate the phenotypes with $$\hbox{h}^{2}$$ h 2 parameter 0.6. QTL and markers were in LD, such that $$\hbox{f}_{{\rm MAF}_{_{{\rm QTL}}}} \neq \hbox{f}_{{\rm MAF}_{_{{\rm markers}}}}$$ f MAF QTL â f MAF markers .
Far Ultraviolet Absolute Flux of alpha Virginis
Creators: name: Morales, Carmen
name: Trapero, Joaquin
name: Gomez, Jose F.
name: Gimenez, Alvaro
name: Orozco, Veronica
name: Bowyer, Stuart
name: Edelstein, Jerry
name: Korpela, Eric
name: Lampton, Michael
name: Cobb, Jeff
Publisher: name: arXiv
Year: 1999
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present the far ultraviolet spectrum of alpha Virginis taken with EURD spectrograph on-board MINISAT-01. The spectral range covered is from ~900 to 1080 A with 5 A spectral resolution. We have fitted Kurucz models to IUE spectra of alpha Vir and compared the extension of the model to our wavelengths with EURD data. This comparison shows that EURD fluxes are consistent with the prediction of the model within 20-30%, depending on the reddening assumed. EURD fluxes are consistent with Voyager observations but are ~60% higher than most previous rocket observations of alpha Vir.
description: 13 pages, 4 figures. Submitted to The Astrophysical Journal
MOESM8 of Understanding the potential bias of variance components estimators when using genomic models
Creators: name: Cuyabano, Beatriz
name: A. Sørensen
name: Sørensen, Peter
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Additional file 8. Relationship between $$\lambda_{{\rm i}}$$ λ i and $$\kappa_{{\rm i}}$$ κ i , and absolute bias of $$\hat{\hbox{h}}^{2}_{{\rm REML}}$$ h ^ REML 2 to $$\hbox{h}^{2}$$ h 2 . Genomic data consisted of QTL plus markers for 2000 completely unrelated individuals. 100 QTL were used to simulate the phenotypes with $$\hbox{h}^{2}$$ h 2 parameter 0.05,0.15,…,0.95. QTL and markers were in LD, such that $$\hbox{f}_{{\rm MAF}_{_{{\rm QTL}}}} \neq \hbox{f}_{{\rm MAF}_{_{{\rm markers}}}}$$ f MAF QTL ≠ f MAF markers . Markers were weighted according to their LD with the QTL.
Difffusion Dynamics on the Coexistence Subspace in a Stochastic Evolutionary Game
Creators: name: Popovic, Lea
name: Peuckert, Liam
Publisher: name: arXiv
Year: 2018
Subjects: subject: Probability (math.PR)
subject: Populations and Evolution (q-bio.PE)
subject: FOS: Mathematics
subject: FOS: Biological sciences
subject: 60J28, 60J60, 91A15, 91A22, 92D15, 92D25

description: Frequency-dependent selection reflects the interaction between different species as they battle for limited resources in their environment. In a stochastic evolutionary game the species relative fitnesses guides the evolutionary dynamics which fluctuate due to random drift. Dependence of species selection advantages on the environment introduces additional possibilities for the evolutionary dynamics. We analyse a simple model in which a random environment allows competing species to coexist for a long time before a fixation of a single species happens. In our analysis we use stability in a linear combination of competing species to approximate the stochastic dynamics of the system by a diffusion on a one dimensional co-existence region. Our method significantly simplifies calculating the probability of first extinction and its expected time, and demonstrates a rigorous model reduction technique for evaluating quasistationary properties of a stochastic evolutionary model.
description: 22 pages, 6 figures
A robust method for measuring the Hubble parameter
Creators: name: Hendry, M. A.
name: Rauzy, S.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We obtain a robust, non-parametric, estimate of the Hubble constant from galaxy linear diameters calibrated using HST Cepheid distances. Our method is independent of the parametric form of the diameter function and the spatial distribution of galaxies and is insensitive to Malmquist bias. We include information on the galaxy rotation velocities; unlike Tully-Fisher, however, we retain a fully non-parametric treatment. We find $H_0=66\pm6$ km/s/Mpc, somewhat larger than previous results using galaxy diameters.
description: 4 pages, 1 figure, Cosmic Flows Workshop, Victoria B.C. Canada, July 1999, ed. S. Courteau, M. Strauss & J. Willick, ASP conf. series
Millepora reticulata Linnaeus, 1758, spec. nov.
Creators: name: Linnaeus, Carolus
Publisher: name: Laurentius Salvius
Year: 1758
Subjects: Biodiversity
Taxonomy
Animalia
Cnidaria
Hydrozoa
Anthoathecata
Milleporidae
Millepora
Millepora reticulata

description: Millepora reticulata [spec. nov.]
M. ramosissima: ramis linearibus compressis anastomosantibus: hinc poris prominulis confertissimis.
Habitat in Mari Mediterraneo. D. D. Kaehler.
Caulis ramosissimus, instar Lichenis rangiferini, horizontalis; ramis passim connexis & reticulatis, linearibus, compressis, supra laevibus, subtus tectis quasi verrucis, in quibus pori confertissimi.
description: Published as part of Linnaeus, Carolus, 1758, Systema Naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Stockholm :Laurentius Salvius on page 791, DOI: 10.5962/bhl.title.542, http://zenodo.org/record/3922206
Standard Model CP-violation and Baryon asymmetry Part I: Zero Temperature
Creators: name: Gavela, M. B.
name: Lozano, M.
name: Orloff, J.
name: Pène, O.
Publisher: name: arXiv
Year: 1994
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We consider quantum effects in a world with two coexisting symmetry phases, unbroken and spontaneously broken, as a result of a first order phase transition. The discrete symmetries of the problem are discussed in general. We compute the exact two-point Green function for a free fermion, when a thin wall separates the two phases. The Dirac propagator displays both massive and massless poles, and new CP-even phases resulting from the fermion reflection on the wall. We discuss the possible quark-antiquark CP asymmetries produced in the Standard Model(SM) for the academic $T=0$ case. General arguments indicate that an effect first appears at order $α_W$ in the reflection amplitude, as the wall acts as a source of momentum and the on-shell one-loop self-energy cannot be renormalized away. The asymmetries stem from the interference of the SM CP-odd couplings and the CP-even phases in the propagator. We perform a toy computation that indicates the type of GIM cancellations of the problem. The behaviour can be expressed in terms of two unitarity triangles.
description: 38 pages, CERN-TH.7262/94, LPTHE-Orsay-94/48, HD-THEP-94-19, FAMNSE-12-94, NSF-ITP-94-64
Vanilla ovata Rolfe
Creators: name: Damián-Parizaca, Alexander
name: Karremans, Adam P.
name: Mitidieri-Rivera-Rivera, Nicole
name: Cameron, Kenneth M.
Publisher: name: Zenodo
Year: 2025
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Asparagales
Orchidaceae
Vanilla
Vanilla ovata

description: 19.Vanilla ovataRolfe (Rolfe 1896: 451)
Fig. 3 A
Type.
FRENCH GUIANA • Cayenne; J. Martin s. n.; holotype: BM †, tracing K! [K 00396194]; lectotype (designated here): P! [P 00612112].
Notes.
Rolfe described Vanilla ovata based on a single specimen conserved at the British Museum (BM). A tracing of this specimen can be found at Kew. However, no specimen fitting Vanilla ovata is currently conserved at BM, and there are no collections by Martin in their records (Norbert Holstein pers. comm.). Given that the specimen seems to be long lost, the only known isotype at P is selected as lectotype.
description: Published as part of Damián-Parizaca, Alexander, Karremans, Adam P., Mitidieri-Rivera-Rivera, Nicole & Cameron, Kenneth M., 2025, Towards a monograph of membranaceous Vanillas: a nomenclatural revision of Vanilla subgen. Vanilla (Vanilloideae, Orchidaceae), pp. 111-121 in Plant Ecology and Evolution 158 (1) on pages 111-121, DOI: 10.5091/plecevo.140667
The dust and [CII] morphologies of redshift ~4.5 sub-millimeter galaxies at ~200pc resolution: The absence of large clumps in the interstellar medium of high-redshift galaxies
Creators: name: Gullberg, B.
name: Swinbank, A. M.
name: Smail, I.
name: Biggs, A. D.
name: Bertoldi, F.
name: De Breuck, C.
name: Chapman, S. C.
name: Chen, C. -C.
name: Cooke, E. A.
name: Coppin, K. E. K.
name: Cox, P.
name: Dannerbauer, H.
name: Dunlop, J. S.
name: Edge, A. C.
name: Farrah, D.
name: Geach, J. E.
name: Greve, T. R.
name: Hodge, J.
name: Ibar, E.
name: Ivison, R. J.
name: Karim, A.
name: Schinnerer, E.
name: Scott, D.
name: Simpson, J. M.
name: Stach, S. M.
name: Thomson, A. P.
name: van der Werf, P.
name: Walter, F.
name: Wardlow, J. L.
name: Weiss, A.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We present deep high resolution (0.03", 200pc) ALMA Band 7 observations covering the dust continuum and [CII] $\lambda157.7μ$m emission in four $z\sim4.4-4.8$ sub-millimeter galaxies (SMGs) selected from the ALESS and AS2UDS surveys. The data show that the rest-frame 160$μ$m (observed 345 GHz) dust emission is consistent with smooth morphologies on kpc scales for three of the sources. One source, UDS47.0, displays apparent substructure but this is also consistent with a smooth morphology, as indicated by simulations showing that smooth exponential disks can appear clumpy when observed at high angular resolution (0.03") and depth of these observations ($σ_{345\text{GHz}} \sim27-47μ$Jy beam$^{-1}$). The four SMGs are bright [CII] emitters, and we extract [CII] spectra from the high resolution data, and recover $\sim20-100$% of the [CII] flux and $\sim40-80$% of the dust continuum emission, compared to the previous lower resolution observations. When tapered to 0.2" resolution our maps recover $\sim80-100$% of the continuum emission, indicating that $\sim60$% of the emission is resolved out on $\sim200$pc scales. We find that the [CII] emission in high-redshift galaxies is more spatially extended than the rest-frame 160$μ$m dust continuum by a factor of $1.6\pm0.4$. By considering the $L_{\text{[CII]}}$/$L_{\text{FIR}}$ ratio as a function of the star-formation rate surface density ($Σ_{\text{SFR}}$) we revisit the [CII] deficit, and suggest that the decline in the $L_{\text{[CII]}}$/$L_{\text{FIR}}$ ratio as a function of $Σ_{\text{SFR}}$ is consistent with local processes. We also explore the physical drivers that may be responsible for these trends and can give rise to the properties found in the densest regions of SMGs.
description: 15 pages, 6 figures, 4 tables, accepted for publication in ApJ
HST Observations of BL Lacertae Environments
Creators: name: Pesce, J. E.
name: Urry, C. M.
name: O'Dowd, M.
name: Scarpa, R.
name: Falomo, R.
name: Treves, A.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We analyze images of BL Lacertae objects obtained with the {\it Hubble Space Telescope} WFPC2 and the F814W filter. The nine objects cover a redshift range of 0.19 to 0.997. The relatively deep images are sufficient to detect galaxies at least one magnitude below M$^{*}_{I}$ (--21.4) and in most cases to three magnitudes below M$^{*}$. Galaxy enhancement over the average background is found around four out of the nine objects. Results for some cases are confirmed by ground-based imaging. In the other cases, the redshifts of the target BL Lac objects may be incorrect or they are truly isolated. These findings reinforce the idea that on average, BL Lac objects are found in regions of above average galaxy density. However, isolated objects apparently can host BL Lac nuclei too, a result that has implications for the processes that trigger/fuel the nuclear activity.
description: to appear in "life cycles of radio galaxies", Ed. J.Biretta et al., New Astronomy Reviews, 4 pages + 1 figure
Genetic risk scores for major psychiatric disorders and the risk of postpartum psychiatric disorders
Creators: name: Bauer A.E
name: Byrne E.M
name: Mægbæk M.L
name: Ingstrup K.G
name: Nordentoft M
name: Mortensen P.B
name: Meltzer-Brody S
name: Agerbo E
name: Munk-Olsen T
name: Sullivan P.F
name: Werge T
name: Mors O
name: Nyegaard M
name: Wray N.R
name: Børglum A.D
name: Liu X
name: Grove J
name: Musliner K.L
name: Hougaard D.M
name: Johannsen B.M.W
name: Wang Y
Publisher: name: Nature Publishing Group
Year: 2019

description: Postpartum psychiatric disorders are heritable, but how genetic liability varies by other significant risk factors is unknown. We aimed to (1) estimate associations of genetic risk scores (GRS) for major depression (MD), bipolar disorder (BD), and schizophrenia (SCZ) with postpartum psychiatric disorders, (2) examine differences by prior psychiatric history, and (3) compare genetic and familial risk of postpartum psychiatric disorders. We conducted a nested case-control study based on Danish population-based registers of all women in the iPSYCH2012 cohort who had given birth before December 31, 2015 (n = 8850). Cases were women with a diagnosed psychiatric disorder or a filled psychotropic prescription within one year after delivery (n = 5829 cases, 3021 controls). Association analyses were conducted between GRS calculated from Psychiatric Genomics Consortium discovery meta-analyses for MD, BD, and SCZ and case-control status of a postpartum psychiatric disorder. Parental psychiatric history was associated with postpartum psychiatric disorders among women with previous psychiatric history (OR, 1.14; 95% CI 1.02–1.28) but not without psychiatric history (OR, 1.08; 95% CI: 0.81–1.43). GRS for MD was associated with an increased risk of postpartum psychiatric disorders in both women with (OR, 1.44; 95% CI: 1.19–1.74) and without (OR, 1.88; 95% CI: 1.26–2.81) personal psychiatric history. SCZ GRS was only minimally associated with postpartum disorders and BD GRS was not. Results suggest GRS of lifetime psychiatric illness can be applied to the postpartum period, which may provide clues about distinct environmental or genetic elements of postpartum psychiatric disorders and ultimately help identify vulnerable groups.
Additional file 2: of CLOUD: a non-parametric detection test for microbiome outliers
Creators: name: Montassier, Emmanuel
name: Al-Ghalith, Gabriel
name: Hillmann, Benjamin
name: Viskocil, Kimberly
name: Kabage, Amanda
name: McKinlay, Christopher
name: Sadowsky, Michael
name: Khoruts, Alexander
name: Knights, Dan
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Physiology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Patient stability as measured by self-similarity over time. Plot of the distance of a day using Unweighted UniFrac distance of the 4 patients who succeed FMT, one patient who failed FMT and 16 healthy controls. Samples were collected from day 1 to day 150. The plot does not include the preFMT samples in FMT-recipient patients. The figure shows stability between samples of the fecal microbiome in healthy controls and in patients with successful FMT among days whereas the patient who failed FMT showed instability between two consecutive samples. (PDF 193 kb)
Millepora lineata Linnaeus, 1758, spec. nov.
Creators: name: Linnaeus, Carolus
Publisher: name: Laurentius Salvius
Year: 1758
Subjects: Biodiversity
Taxonomy
Animalia
Cnidaria
Hydrozoa
Anthoathecata
Milleporidae
Millepora
Millepora lineata

description: Millepora lineata [spec. nov.]
M. ramosissima dichotoma, poris per series digestis.
Habitat ..
Caulis filiformis, ramosissimus, divaricatus, concatenatis ramis. Pori per series longitudinales.
description: Published as part of Linnaeus, Carolus, 1758, Systema Naturae per regna tria naturae: secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Stockholm :Laurentius Salvius on page 791, DOI: 10.5962/bhl.title.542, http://zenodo.org/record/3922206