cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
A convolutional autoencoder approach for mining features in cellular electron cryo-tomograms and weakly supervised coarse segmentation
Creators: name: Zeng, Xiangrui
name: Leung, Miguel Ricardo
name: Zeev-Ben-Mordehai, Tzviya
name: Xu, Min
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantitative Methods (q-bio.QM)
subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Biological sciences
subject: FOS: Computer and information sciences

description: Cellular electron cryo-tomography enables the 3D visualization of cellular organization in the near-native state and at submolecular resolution. However, the contents of cellular tomograms are often complex, making it difficult to automatically isolate different in situ cellular components. In this paper, we propose a convolutional autoencoder-based unsupervised approach to provide a coarse grouping of 3D small subvolumes extracted from tomograms. We demonstrate that the autoencoder can be used for efficient and coarse characterization of features of macromolecular complexes and surfaces, such as membranes. In addition, the autoencoder can be used to detect non-cellular features related to sample preparation and data collection, such as carbon edges from the grid and tomogram boundaries. The autoencoder is also able to detect patterns that may indicate spatial interactions between cellular components. Furthermore, we demonstrate that our autoencoder can be used for weakly supervised semantic segmentation of cellular components, requiring a very small amount of manual annotation.
description: Accepted by Journal of Structural Biology
Epifanía y Poema en Prosa (El Livro do Desassossego de Fernando Pessoa/Bernardo Soares)
Creators: name: Romero, Raúl
name: Garay, René
Publisher: name: Forma Breve
Year: 2004

description: El tema de este ensayo es el poema en prosa como categoría estética presente en la obra de Fernando Pessoa. Se pretende analizar su carácter subversivo e híbrido como género literario así como su ideología artística en el Livro do Desassossego del semi-heterónimo, Bernardo Soares. Más allá de esta problemática que nos presenta la nomenclatura de géneros literarios, se intentará también subrayar la importancia del momento lírico que caracterizó la escrita modernista por medio de la “epifanía”, especialmente su intertextualidad con los escritores de prosas escritas como poema.
description: Forma Breve, n.º 2 (2004): O poema em prosa
MOESM1 of Evaluation of reference genes for gene expression studies in mouse and N2a cell ischemic stroke models using quantitative real-time PCR
Creators: name: Yingbo Kang
name: Zhuomin Wu
name: Cai, De
name: Binger Lu
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: 69999 Biological Sciences not elsewhere classified
subject: Computational Biology

description: Additional file 1: Table S1. PCR primers targeting the reference genes and the target gene BDNF.
TALABALARNING KREATIV QOBILIYATINI INNOVATSION RIVOJLANTIRISHNING PSIXOLOGIK OMILLARI
Creators: name: To'raqulov, Bo'ri
Publisher: name: Zenodo
Year: 2024

description: Mazkur maqolada insondagi qobiliyatlarning ta’lim jarayonidagi roli, qobiliyatning turlari,ta’lim oluvchilarning individual faoliyat uslubi umumiy va maxsus qobiliyatlari, qiziqishlari bilan bog‘liq holda shakllanishi to‘g‘risidagi ma’lumotlar bayon qilingan.
FRONTSH1P_D4.2 Citizens engagement PLAN for CSS2 co-creation and deployment
Creators: name: Centre for Promotion and Development Civil  Society OPUS
Publisher: name: FRONTSH1P Project
Year: 2022

description: The report concerns the deliverable D. 4.2 Citizens engagement Plan for CSS2 co-creation and deployment. The report consists of two parts: 1. an analysis of how the concept of citizens' engagement is understood for the purposes of the FRONTSH1P project. The analytical part refers to the studies produced as part of the analyses. The main element of this part of the report is the development of a definition of citizens' engagement for the purposes of the project. 2. the planned activities for involving citizens in the CSS2 food&feed activities. Due to the fact that some of the tasks will be transferred to WP7 the report contains information about the coherence of the plan with the activities of WP7 and their complementarity
Demo Project 3: Making ontologies INTERoperable: The DEMO-INTER Project.
Creators: name: Baird, Harriet M.
name: Webb, Thomas
name: West, Robert
name: Michie, Susan
name: Hastings, Janna
name: Mazumdar, Suvodeep
name: Martin, Sancha
name: Rodger, Amy
Publisher: name: OSF
Year: 2024

description: DEMO-INTER will develop and evaluate a method for achieving interoperability between ontologies.
MOESM2 of Online tools supporting the conduct and reporting of systematic reviews and systematic maps: a case study on CADIMA and review of existing tools
Creators: name: Kohl, Christian
name: McIntosh, Emma
name: Unger, Stefan
name: Haddaway, Neal
name: Kecke, Steffen
name: Schiemann, Joachim
name: Wilhelm, Ralf
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Science Policy

description: Additional file 2. CADIMA terms of service.
Separability of diagonal symmetric states: a quadratic conic optimization problem
Creators: name: Tura, Jordi
name: Aloy, Albert
name: Quesada, Ruben
name: Lewenstein, Maciej
name: Sanpera, Anna
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We study the separability problem in mixtures of Dicke states i.e., the separability of the so-called Diagonal Symmetric (DS) states. First, we show that separability in the case of DS in $C^d\otimes C^d$ (symmetric qudits) can be reformulated as a quadratic conic optimization problem. This connection allows us to exchange concepts and ideas between quantum information and this field of mathematics. For instance, copositive matrices can be understood as indecomposable entanglement witnesses for DS states. As a consequence, we show that positivity of the partial transposition (PPT) is sufficient and necessary for separability of DS states for $d \leq 4$. Furthermore, for $d \geq 5$, we provide analytic examples of PPT-entangled states. Second, we develop new sufficient separability conditions beyond the PPT criterion for bipartite DS states. Finally, we focus on $N$-partite DS qubits, where PPT is known to be necessary and sufficient for separability. In this case, we present a family of almost DS states that are PPT with respect to each partition but nevertheless entangled.
description: 31 pages (17 + appendices), 4 figures. Version accepted for publication in Quantum
De Dalí a Lorca: El poema en prosa surrealista
Creators: name: Sanmartín Bastida, Rebeca
Publisher: name: Forma Breve
Year: 2004

description: Este artículo aborda los poemas en prosa que escribió Federico García Lorca en su época vanguardista, editados recientemente por A. Anderson (2000). Esta obra es puesta en relación con la pintura de Salvador Dalí, con la que comparte muchos motivos; tam bién se indaga en la relación que ambos artistas sostuvieron con el cineasta Luis Buñuel, que pudo ser acicate para esta producción en prosa de Lorca.
description: Forma Breve, n.º 2 (2004): O poema em prosa
Research data in your field - University of Bergen Library Presentation 12/10/2021
Creators: name: Ostrop, Jenny
name: Tiemann, Juliane
Publisher: name: Zenodo
Year: 2021
Subjects: Research Data Life Cycle
Open Data
Research Data Management

description: Research data in your field - Topic meeting UiB Library Education & Research Support, 12/10/2021. Data Terminology Research Data Life Cycle & Data Management Essentials Finding datasets in your field During the digital meeting, audience responses to questions were collected using Mentimeter and Padlet. Version 2 includes the Mentimeter results.
José Régio e o poema em prosa
Creators: name: Cabral, Mónica
Publisher: name: Forma Breve
Year: 2004

description: Na primeira parte deste artigo, apresentamos uma visão geral de um dos mais complexos géneros líricos – o poema em prosa –, dando importância a um aspecto teórico em particular: o carácter subversivo desta forma literária, que se pode manifestar através do recurso a elementos narrativos. Na segunda parte, sugerimos algumas hipó teses de interpretação dos poemas em prosa de José Régio, que apresentam traços reveladores da poesia deste autor, mantendo, ao mesmo tempo, uma ligação com o percurso histórico-literário deste género.
description: Forma Breve, n.º 2 (2004): O poema em prosa
Oscillons in the presence of external potential
Creators: name: Romańczukiewicz, Tomasz
name: Shnir, Yakov
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Pattern Formation and Solitons (nlin.PS)
subject: FOS: Physical sciences

description: We discuss similarity between oscillons and oscillational mode in perturbed $ϕ^4$. For small depths of the perturbing potential it is difficult to distinguish between oscillons and the mode in moderately long time evolution, moreover one can transform one into the other by adiabatically switching on and off the potential. Basins of attraction are presented in the parameter space describing the potential and initial conditions.
description: 24 pages, 15 figures, largely expanded version
FAIR research data & citable code - University of Bergen Library Presentation 07/10/2021
Creators: name: Ostrop, Jenny
Publisher: name: Zenodo
Year: 2021
Subjects: Open Science
Open Data
Open Source
FAIR principles
FAIR
FAIR4RS
Research Data Management
Research Software
Software Citation

description: FAIR research data & citable code - Presentation for R-Ladies Bergen on 07/10/2021. The stage: Open Science as "the new normal" Open & FAIR research data FAIR research software How to make your code citable
description: Contact: research-data@uib.no
Additional file 1: of Development and internal validation of the multivariable CIPHER (Collaborative Integrated Pregnancy High-dependency Estimate of Risk) clinical risk prediction model
Creators: name: Payne, Beth
name: Ryan, Helen
name: Bone, Jeffrey
name: Magee, Laura
name: Aarvold, Alice
name: Mark Ansermino, J.
name: Bhutta, Zulfiqar
name: Bowen, Mary
name: Guilherme Cecatti, J.
name: Chazotte, Cynthia
name: Crozier, Tim
name: de Pont, Anne-CornĂŠlie
name: Demirkiran, Oktay
name: Duan, Tao
name: Kallen, Marlot
name: Ganzevoort, Wessel
name: Geary, Michael
name: Goffman, Dena
name: Hutcheon, Jennifer
name: Joseph, K.
name: Lapinsky, Stephen
name: Lataifeh, Isam
name: Li, Jing
name: Liskonova, Sarka
name: Hamel, Emily
name: McAuliffe, Fionnuala
name: OâHerlihy, Colm
name: Mol, Ben
name: Seaward, P.
name: Tadros, Ramzy
name: Togal, Turkan
name: Qureshi, Rahat
name: Vivian Ukah, U.
name: Vasquez, Daniela
name: Wallace, Euan
name: Yong, Paul
name: Zhou, Vivian
name: Walley, Keith
name: von Dadelszen, Peter
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Table S1. CIPHER (Collaborative Integrated Pregnancy High-dependency Estimate of Risk) cohort collaborators and site contribution. Table S2. Patient characteristics and univariate analysis results generated through complete case analysis. Table S3. Characteristics of women with and without missing data. (DOCX 43Â kb)
Additional file 2: Table S2. of DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data
Creators: name: Arango-Argoty, Gustavo
name: Garner, Emily
name: Pruden, Amy
name: Lenwood Heath
name: Vikesland, Peter
name: Liqing Zhang
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Plant Biology
subject: 60506 Virology

description: Prediction performance of the individual ARG categories for the deepARG-SS model and the Best Hit approach using the UNIPROT 70% genes for training and 30% for validation, where, genes are split into 100Â nt long kmers to simulate next generation short sequences. (PDF 73Â kb)
title: 02_0270
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
O poema em prosa: «Calambata ou os dias da guerra» – um diálogo entre formas literárias
Creators: name: Duarte, Manuela
Publisher: name: Forma Breve
Year: 2004

description: Reflexão acerca do subgénero híbrido poema em prosa. A permeabilidade dos modos literários (lírico e narrativo) – contaminação entre modos e benefícios mútuos colhidos em tal contacto. O poema em prosa e a narrativa lírica de João de Melo em confronto, a partir das obras Navegação da Terra e Autópsia de um Mar de Ruínas.
description: Forma Breve, n.º 2 (2004): O poema em prosa
Additional file 1: of Effectiveness of active school transport interventions: a systematic review and update
Creators: name: Larouche, Richard
name: Mammen, George
name: Rowe, David
name: Faulkner, Guy
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Appendix 1. Adjusted criteria for the Effective Public Health Practice Project quality assessment tool for quantitative studies. (DOCX 33 kb)
Factors Determining Atomic Crystal Size and Bonding Points
Creators: name: Morefield, Richard
Publisher: name: figshare
Year: 2013
Subjects: Atomic Physics

description: The Periodic Atomic Crystal Table illustrates that the atom size is determined by single electrons and the physical shape determines the bonding points and type of bonding possible. MY RESEARCH PAPER AND SIMULATION PROGRAM COLLECTION MAY BE ACCESSED BY CLICKING ON THE Atom Crystal Theory KEYWORD.
Branquinho da Fonseca, o “poetaprosador”
Creators: name: Rodrigues Filho, José Maria
Publisher: name: Forma Breve
Year: 2004

description: O assunto fixa-se no âmbito do Simbolismo e do Modernismo Português (Presencismo/Branquinho da Fonseca) com o intuito de estudar a proposta inovadora da linguagem e sua relação com os tipos de discurso em “poemas em prosa”.
description: Forma Breve, n.º 2 (2004): O poema em prosa
Additional file 1: of Is small size at birth associated with early childhood morbidity in white British and Pakistani origin UK children aged 0â 3? Findings from the born in Bradford cohort study
Creators: name: West, Jane
name: Kelly, Brian
name: Collings, Paul
name: Santorelli, Gillian
name: Mason, Dan
name: Wright, John
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: Computational Biology

description: Table S1. Comparison of models of predicted child outcome measures (with 95% CI), by ethnicity, low birth-weight and small for gestational age (SGA-GROW) with and without adjustment for socio-economic variables (predicted rates with 95% CI). Table S2. Comparison of adjusted* incidence rate ratios (95% CI) of child outcome measures by ethnicity, low birth-weight and small for gestational age (SGA-GROW) with and without adjustment for socioeconomic variables. (DOC 89 kb)
Correlating thermal machines and the second law at the nanoscale
Creators: name: Mueller, Markus P.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Quantum Physics (quant-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Thermodynamics at the nanoscale is known to differ significantly from its familiar macroscopic counterpart: the possibility of state transitions is not determined by free energy alone, but by an infinite family of free-energy-like quantities; strong fluctuations (possibly of quantum origin) allow to extract less work reliably than what is expected from computing the free energy difference. However, these known results rely crucially on the assumption that the thermal machine is not only exactly preserved in every cycle, but also kept uncorrelated from the quantum systems on which it acts. Here we lift this restriction: we allow the machine to become correlated with the microscopic systems on which it acts, while still exactly preserving its own state. Surprisingly, we show that this restores the second law in its original form: free energy alone determines the possible state transitions, and the corresponding amount of work can be invested or extracted from single systems exactly and without any fluctuations. At the same time, the work reservoir remains uncorrelated from all other systems and parts of the machine. Thus, microscopic machines can increase their efficiency via clever "correlation engineering" in a perfectly cyclic manner, which is achieved by a catalytic system that can sometimes be as small as a single qubit (though some setups require very large catalysts). Our results also solve some open mathematical problems on majorization which may lead to further applications in entanglement theory.
description: 11+13 pages, 5 figures. Added some clarifications and corrections; results unchanged. Close to published version
Data Management Plan (DMP) Introduction - University of Bergen Library webinar 17/09/2021
Creators: name: Ostrop, Jenny
Publisher: name: Zenodo
Year: 2021
Subjects: Open Science
Open Data
FAIR
Research Data Management
Research Data Lifecycle

description: Webinar "Data Management Plan (DMP) Introduction" by the University of Bergen Library, 17.09.2021.
description: Contact: research-data@uib.no
Finding and reusing research data - University of Bergen Library webinar 27/08/2021
Creators: name: Ostrop, Jenny
Publisher: name: Zenodo
Year: 2021
Subjects: Open Science
Open Data
FAIR
Research Data Management
Research Data Lifecycle

description: Webinar "Finding and reusing research data" by the University of Bergen Library, 27.08.2021.

 The webinar consists of three modules.

 Module 1: Introduction to FAIR research data as a resource Introduction to Open Science What is (open) research data Why reuse data FAIR principles as prerequisites for data reuse Module 2: Dataset discovery and data citation Discovering datasets - data from public sector, data in document archives, scientific datasets Strategies to find scientific datasets - data underlying a scientific article, data in research data repositories Data citation Module 3: Research data metasearch Comparison of DataCite, BASE, OpenAire, MendeleyData, Google Dataset Search
description: Contact: research-data@uib.no
MOESM1 of Plasmid to generate Mycobacteria mutants
Creators: name: Deng, Qi
name: Jianzhou Meng
name: Guan, Yan
name: Yishuang Liu
name: Chunling Xiao
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 1. PCR primers used in this study.
Optimal charge-to-spin conversion in graphene on transition metal dichalcogenides
Creators: name: Offidani, Manuel
name: Milletarí, Mirco
name: Raimondi, Roberto
name: Ferreira, Aires
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: When graphene is placed on a monolayer of semiconducting transition metal dichalcogenide (TMD) its band structure develops rich spin textures due to proximity spin-orbital effects with interfacial breaking of inversion symmetry. In this work, we show that the characteristic spin winding of low-energy states in graphene on TMD monolayer enables current-driven spin polarization known as the inverse spin galvanic effect (ISGE). By introducing a proper figure of merit, we quantify the efficiency of charge-to-spin conversion and show it is close to unity when the Fermi level approaches the spin minority band. Remarkably, at high electronic density, even though sub-bands with opposite spin helicities are occupied, the efficiency decays only algebraically. The giant ISGE predicted for graphene on TMD monolayer is robust against disorder and remains large at room temperature.
description: 5 pages, 3 figures + supplemental material (5 pages, 4 figures); accepted version
Value of quantitative ultrasound and bioelectrical impedance analysis in detecting low bone mineral density in hemodialysis
Creators: name: Xiang, Ting
name: Zhou, Li
name: Fu, Ping
name: Yan, Xue-Ping
name: Zeng, Xiao-Qing
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Hematology

description: Patients on maintenance hemodialysis (MHD) are highly predisposed to low bone mineral density (BMD). This study aims to assess the value of quantitative ultrasound (QUS), bioelectrical impedance analysis (BIA), and their combination in detecting high-risk patients for low BMD in MHD. Patients’ BMD of the total hip, femoral neck, and lumbar spine were measured using dual-energy X-ray absorptiometry (DXA). Bone mineral content (BMC) was assessed using BIA. Calcaneal BMD was measured using QUS. Patients with a T-score of ≤-2.5 were recorded as ‘low BMD.’ Overall, 93 subjects (62.37% female; mean age, 60.8 ± 16.2 years) were included in this cross-sectional study; approximately 36.56% met the ‘low BMD’ criteria. QUS-T score predicted low BMD with an area under the curve (AUC) value of 0.738, sensitivity of 70.59%, and specificity of 76.27%. The AUC for low BMD diagnosis using the BMC index (BMCI) measured through BIA was 0.679 (sensitivity, 91.18%; specificity, 38.98%). On the other hand, the combination of QUS-T score and BMCI yielded a higher AUC value of 0.762 with an improved specificity of 88.14%. Compared with the QUS and BIA alone, the net reclassification improvement (NRI) of the combination model increased by 47.16% (p = 0.022) and 78.36% (p < 0.0001), respectively. Integrated discrimination improvement (IDI) increased by 5.25% (p = 0.043) and 9.99% (p = 0.003), respectively. QUS-T score and BMCI were related to BMD independently assessed by DXA. The combination of QUS and BIA is effective in screening for low BMD among MHD patients.
title: Exploring the Potential of Vaccination to Combat Trypanosoma cruzi Infection using Bioluminescent Imaging
Creators: name: Mann, GS
Publisher: name: London School of Hygiene & Tropical Medicine
Year: 2020

description: Trypanosoma cruzi is the causative agent of Chagas disease. It is responsible for the highest disease burden of any parasitic infection in Latin America. There is no prophylaxis and the only available therapeutic treatments frequently report toxic side-effects. A prophylactic vaccine would provide a valuable tool for reducing the disease burden. Despite this, no vaccine has progressed into clinical testing. A major obstacle has been the lack of available tools to monitor the parasite burden in vivo, particularly during the chronic stage. Here, we have applied highly sensitive bioluminescent imaging technology to develop our understanding of vaccination strategies aimed at combating T. cruzi infection in mice. First, we applied the system to test a viral vectored vaccine, designed to express two leading T. cruzi vaccine targets (ASP2 and TS). Although this reduced the parasite burden during the acute stage (~70%), it had no long term impact on the course of the infection. We then assessed how this outcome compared to protection conferred by drug cured natural infections. We found that the level of protection was considerably greater than that achieved with viral vaccines (>99%, with several instances of sterile protection) and that the degree of protection was associated with the T. cruzi-specific IFN-γ+ T cell response. We also utilised the in vivo bioluminescence model to investigate if induction of gut inflammation could cure chronically infected mice. By administering a chemical inducer of colitis, we assessed the feasibility of eliminating T. cruzi from the colon, a major parasitological niche in the chronic stage. Finally, we sought to develop attenuated parasites to use as tools for studying live attenuated vaccination by generating null mutant strains of T. cruzi using Cas9 genome engineering. This thesis therefore highlights some of the applications of highly sensitive bioluminescent imaging in furthering our understanding of T. cruzi infection and in accelerating the development of vaccines in the pre-clinical stage.
MOESM1 of Online tools supporting the conduct and reporting of systematic reviews and systematic maps: a case study on CADIMA and review of existing tools
Creators: name: Kohl, Christian
name: McIntosh, Emma
name: Unger, Stefan
name: Haddaway, Neal
name: Kecke, Steffen
name: Schiemann, Joachim
name: Wilhelm, Ralf
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: Science Policy
subject: Computational Biology

description: Additional file 1. Search strategy for identifying software programs listed in TableÂ 1.
Research support services at the University of Bergen (UiB) Library - Presentation for UiB Computational Biology Unit 26/08/2021
Creators: name: Ostrop, Jenny
Publisher: name: Zenodo
Year: 2021
Subjects: Library
Open Science
Open Access
Open Data
Research Data Management
Bibliometrics
Research Assessment

description: Research support services at the University of Bergen (UiB) Library and a practical introduction to citable code - Presentation for UiB Computational Biology Unit (CBU) on 26/08/2021.
On pro-$p$ link groups of number fields
Creators: name: Mizusawa, Yasushi
Publisher: name: arXiv
Year: 2017
Subjects: subject: Number Theory (math.NT)
subject: FOS: Mathematics
subject: 11R23, 11R18, 11R32, 57M05

description: As an analogue of a link group, we consider the Galois group of the maximal pro-$p$-extension of a number field with restricted ramification which is cyclotomically ramified at $p$, i.e, tamely ramified over the intermediate cyclotomic $\mathbb Z_p$-extension of the number field. In some basic cases, such a pro-$p$ Galois group also has a Koch type presentation described by linking numbers and mod $2$ Milnor numbers (Rédei symbols) of primes. Then the pro-$2$ Fox derivative yields a calculation of Iwasawa polynomials analogous to Alexander polynomials.
description: 36 pages
Light-Cone Distribution Amplitudes of Light $J^{PC}=2^{--}$ Tensor Mesons in QCD
Creators: name: Aliev, T. M.
name: Bilmis, S.
name: Yang, Kwei-Chou
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We present a study for two-quark light-cone distribution amplitudes for the $1^3D_2$ light tensor meson states with quantum number $J^{PC}=2^{--}$. Because of the G-parity, the chiral-even two-quark light-cone distribution amplitudes of this tensor meson are antisymmetric under the interchange of momentum fractions of the quark and antiquark in the SU(3) limit, while the chiral-odd ones are symmetric. The asymptotic leading-twist LCDAs with the strange quark mass correction are shown. We estimate the relevant parameters, the decay constants $f_T$ and $f_T^\perp$, and first Gegenbauer moment $a_1^\perp$, by using the QCD sum rule method. These parameters play a central role in the investigation of $B$ meson decaying into the $2^{--}$ tensor mesons.
description: 18 pages, 3 Figures
title: ADCO, Cartulaire de Cîteaux pour les possessions de Tontenant (c. 1504), Cart. 184 (11 H 987), 105 folios, f. 0103
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2015
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: cartulaire

description: Cartulaire de Cîteaux pour les possessions de Tontenant (c. 1504), Archives départementales de la Côte-d'Or, Cart. 184 (11 H 987), 105 folios, f. 0103, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire de Cîteaux pour les possessions de Tontenant (c. 1504), Archives départementales de la Côte-d'Or, Cart. 184 (11 H 987), 105 folios, f. 0103, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Waves along fractal coastlines: From fractal arithmetic to wave equations
Creators: name: Czachor, Marek
Publisher: name: arXiv
Year: 2017
Subjects: subject: Dynamical Systems (math.DS)
subject: Mathematical Physics (math-ph)
subject: Chaotic Dynamics (nlin.CD)
subject: Pattern Formation and Solitons (nlin.PS)
subject: FOS: Mathematics
subject: FOS: Physical sciences

description: Beginning with addition and multiplication which are intrinsic to a Koch-type curve, I formulate and solve a wave equation that describes wave propagation along a fractal coastline. As opposed to the examples known from the literature I do not replace the fractal by the continuum in which it is embedded. This seems to be the first example of a truly intrinsic description of wave propagation along a fractal curve.
description: First version of the paper was submitted to arXiv on 9 Jul 2017
Additional file 1: of Ubiquitin-specific protease 3 promotes cell migration and invasion by interacting with and deubiquitinating SUZ12 in gastric cancer
Creators: name: Wu, Xiaosheng
name: Liu, Mengwei
name: Zhu, Huiqiong
name: Wang, Jing
name: Dai, Weiyu
name: Li, Jiaying
name: Zhu, Danping
name: Tang, Weimei
name: Xiao, Yizhi
name: Lin, Jianjiao
name: Zhang, Wenjing
name: Sun, Yong
name: Zhang, Yi
name: Chen, Yaying
name: Li, Guoxin
name: Li, Aimin
name: Xiang, Li
name: Liu, Side
name: Wang, Jide
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Mathematical Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Infectious Diseases
subject: FOS: Health sciences

description: Table S1. Correlation between USP3 protein expression and the clinicopathological parameters of GC. Table S2. iTRAQ ratios of down-regulated proteins in GC tissues. Supplementary materials and methods. (DOCX 53 kb)
Noetherianity and Specht problem for varieties of bicommutative algebras
Creators: name: Drensky, Vesselin
name: Zhakhayev, Bekzat K.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Rings and Algebras (math.RA)
subject: FOS: Mathematics
subject: 17A30, 17A50

description: Nonassociative algebras satisfying the polynomial identities x(yz)=y(xz) and (xy)z=(xz)y are called bicommutative. We prove the following results: (i) Finitely generated bicommutative algebras are weakly noetherian, i.e., satisfy the ascending chain condition for two-sided ideals. (ii) We give the positive solution to the Specht problem (or the finite basis problem) for varieties of bicommutative algebras over an arbitrary field of any characteristic.
description: LATEX, 10 pages, to appear in Journal of Algebra, Available online 28 December 2017
Additional file 6: Table S6. of Near-death experiences, attacks by family members, and absence of health care in their home countries affect the quality of life of refugee women in Germany: a multi-region, cross-sectional, gender-sensitive study
Creators: name: Jesuthasan, Jenny
name: SĂśnmez, Ekin
name: Abels, Ingar
name: Kurmeyer, Christine
name: Gutermann, Jana
name: Kimbel, Renate
name: KrĂźger, Antje
name: Guenter Niklewski
name: Kneginja Richter
name: Stangier, Ulrich
name: Wollny, Anja
name: Zier, Ulrike
name: Oertelt-Prigione, Sabine
name: Meryam Shouler-Ocak
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Multivariate association between quality of life, health perception, need satisfaction, and traumatic experience on or before flight. (DOCX 12 kb)
Thermal out-of-time-order correlators, KMS relations, and spectral functions
Creators: name: Haehl, Felix M.
name: Loganayagam, R.
name: Narayan, Prithvi
name: Nizami, Amin A.
name: Rangamani, Mukund
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Mathematical Physics (math-ph)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We describe general features of thermal correlation functions in quantum systems, with specific focus on the fluctuation-dissipation type relations implied by the KMS condition. These end up relating correlation functions with different time ordering and thus should naturally be viewed in the larger context of out-of-time-ordered (OTO) observables. In particular, eschewing the standard formulation of KMS relations where thermal periodicity is combined with time-reversal to stay within the purview of Schwinger-Keldysh functional integrals, we show that there is a natural way to phrase them directly in terms of OTO correlators. We use these observations to construct a natural causal basis for thermal n-point functions in terms of fully nested commutators. We provide several general results which can be inferred from cyclic orbits of permutations, and exemplify the abstract results using a quantum oscillator as an explicit example.
description: 36 pages + appendices. v2: minor changes + refs added. v3: minor changes, published version
Estimating the production rates of D-wave charmed mesons via the semileptonic decays of bottom mesons
Creators: name: Chen, Kan
name: Ke, Hong-Wei
name: Liu, Xiang
name: Matsuki, Takayuki
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: In this work, using the covariant light front approach with conventional vertex functions, we estimate the production rates of $D$-wave charmed/charmed-strange mesons via $B_{(s)}$ semileptonic decays. Due to these calculated considerable production rates, it is possible to experimentally search for $D$-wave charmed/charmed-strange mesons via the semileptonic decays, which may provide extra approach to explore $D$-wave charmed/charmed-strange mesons.
description: 25 pages, 6 figures and 4 tables
title: 01_2711
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
O florir do encontro casual
Creators: name: Ferreira, António Manuel
Publisher: name: Forma Breve
Year: 2003

description: No conto «Os Filhos da Noite», de Domingos Monteiro, um homem e uma mulher encontram-se casualmente. Poderia acontecer uma história de amor, mas as leis do destino são mais fortes do que a vontade humana.
description: Forma Breve, n.º 1 (2003): O conto: teoria e análise
Additional file 1: Table S1. of DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data
Creators: name: Arango-Argoty, Gustavo
name: Garner, Emily
name: Pruden, Amy
name: Lenwood Heath
name: Vikesland, Peter
name: Liqing Zhang
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 60506 Virology

description: Detected antibiotic names from the CARD and ARDB databases. Each antibiotic is grouped by the class of antibiotics. (PDF 65Â kb)
title: Programme de l'ATED Que fait l'histoire sociale de l'appartenance religieuse ? 2017
Creators: name: TELEMME (UMR 7303)
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2019

description: Programme de l'atelier thématique Que fait l'histoire sociale de l'appartenance religieuse ?, porté par Thomas Glesener (TELEMME), dans le cadre du programme ATED, initié par le LabexMed.
O monstro-barão, a bela-adormecida e a rosa mística
Creators: name: Monteiro, Anthero
Publisher: name: Forma Breve
Year: 2003

description: Procede-se neste texto a uma leitura do conto O Barão (1942), de Branquinho da Fonseca, numa perspectiva mística: a resultante das múltiplas tensões que o atravessam obedece nitidamente a um apelo ao que há de mais grotesco e animal no Homem para que ascenda à beleza do Bem ou ao bem da Beleza.
description: Forma Breve, n.º 1 (2003): O conto: teoria e análise
Tensão narrativa e subversão do poder no conto brevíssimo de Mário-Henrique Leiria
Creators: name: Carmo, Carina Infante
Publisher: name: Forma Breve
Year: 2003

description: O exercício da tensão narrativa constitui, em Contos do Gin-Tonic e Novos Contos do Gin (1973), a matriz da forma e da leitura do conto brevíssimo que assim mutuamente se implicam. É afinal na miniatura do conto que Mário-Henrique Leiria encontra a estratégia poderosa e mordaz de subverter o poder.
description: Forma Breve, n.º 1 (2003): O conto: teoria e análise
The invariant subspace problem for rank one perturbations
Creators: name: Tcaciuc, Adi
Publisher: name: arXiv
Year: 2017
Subjects: subject: Functional Analysis (math.FA)
subject: FOS: Mathematics
subject: 47A15 (Primary), 47A55 (Secondary)

description: We show that for any bounded operator $T$ acting on an infinite dimensional Banach space there exists an operator $F$ of rank at most one such that $T+F$ has an invariant subspace of infinite dimension and codimension. We also show that whenever the boundary of the spectrum of $T$ or $T^*$ does not consist entirely of eigenvalues, we can find such rank one perturbations that have arbitrarily small norm. When this spectral condition is not satisfied, we can still find suitable finite rank perturbations of arbitrarily small norm, but not necessarily of rank one.
description: Final version, to appear in Duke Math. J
Additional file 5: Table S5. of Near-death experiences, attacks by family members, and absence of health care in their home countries affect the quality of life of refugee women in Germany: a multi-region, cross-sectional, gender-sensitive study
Creators: name: Jesuthasan, Jenny
name: SĂśnmez, Ekin
name: Abels, Ingar
name: Kurmeyer, Christine
name: Gutermann, Jana
name: Kimbel, Renate
name: KrĂźger, Antje
name: Guenter Niklewski
name: Kneginja Richter
name: Stangier, Ulrich
name: Wollny, Anja
name: Zier, Ulrike
name: Oertelt-Prigione, Sabine
name: Meryam Shouler-Ocak
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Association between sociodemographic variables, quality of life, health perception, and need satisfaction. (DOCX 13 kb)
On the connection between evolution algebras, random walks and graphs
Creators: name: Cadavid, Paula
name: Montoya, Mary Luz Rodiño
name: Rodríguez, Pablo M.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Rings and Algebras (math.RA)
subject: FOS: Mathematics
subject: 05C25, 17D92, 17D99, 05C81

description: Evolution algebras are a new type of non-associative algebras which are inspired from biological phenomena. A special class of such algebras, called Markov evolution algebras, is strongly related to the theory of discrete time Markov chains. The winning of this relation is that many results coming from Probability Theory may be stated in the context of Abstract Algebra. In this paper we explore the connection between evolution algebras, random walks and graphs. More precisely, we study the relationships between the evolution algebra induced by a random walk on a graph and the evolution algebra determined by the same graph. Given that any Markov chain may be seen as a random walk on a graph we believe that our results may add a new landscape in the study of Markov evolution algebras.
description: Improved version, to appear in Journal of Algebra and Its Applications
A Casa do Fim: um conto de José Riço Direitinho
Creators: name: Oliveira, Catarina Alexandra Monteiro
Publisher: name: Forma Breve
Year: 2003

description: O livro A Casa do Fim, do jovem escritor José Riço Direitinho, é composto por dez narrativas breves e autónomas, histórias de vida e, sobretudo, de morte, protagonizadas por personagens invulgares. Direitinho dá forma a um universo ficcional fortemente determinado pela ruralidade, onde a tendência realista facilmente se combina com um halo de fantástico. Em A Casa do Fim, conto estrutural e semanticamente fragmentário, sabedorias profundas e hábitos ancestrais são transmitidos de mãe para filha. A transgressão do pai é expiada pelo filho, apresentando-se o suicídio como uma necessidade fatal.
description: Forma Breve, n.º 1 (2003): O conto: teoria e análise
title: ADCO, Boursier de Cîteaux : comptes (1489-1493) (11 H 1166), f. 00134
Creators: name: de la Côte-d'Or, Archives départementales
name: Petot, Frédéric
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2019
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: comptes
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Boursier de Cîteaux : comptes (1489-1493), Archives départementales de la Côte-d'Or, (11 H 1166). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Boursier de Cîteaux : comptes (1489-1493), Archives départementales de la Côte-d'Or, (11 H 1166), f. 00134, in Projet CBMA - Corpus Burgundiae Medii Aevi \[Ressource en ligne\], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261