cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Coelogyne coccinea M. W. Chase & Schuit. 2021, comb. nov.
Creators: name: Chase, Mark W.
name: Gravendeel, Barbara
name: Sulistyo, Bobby P.
name: Wati, Richa Kusuma
name: Schuiteman, André
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Asparagales
Orchidaceae
Coelogyne
Coelogyne coccinea

description: Coelogyne coccinea (H.A.Pedersen & Gravend.) M.W.Chase & Schuit., comb. nov.
 Basionym: Dendrochilum coccineum H.A.Pedersen & Gravend., Blumea 49: 356 (2004).
description: Published as part of Chase, Mark W., Gravendeel, Barbara, Sulistyo, Bobby P., Wati, Richa Kusuma & Schuiteman, André, 2021, Expansion of the orchid genus Coelogyne (Arethuseae; Epidendroideae) to include Bracisepalum, Bulleyia, Chelonistele, Dendrochilum, Dickasonia, Entomophobia, Geesinkorchis, Gynoglottis, Ischnogyne, Nabaluia, Neogyna, Otochilus, Panisea and Pholidota, pp. 94-134 in Phytotaxa 510 (2) on page 106, DOI: 10.11646/phytotaxa.510.2.1, http://zenodo.org/record/5426332
Umbrella sampling of proton transfer in a creatine–water system
Creators: name: Ivchenko, Olga
name: Bachert, Peter
name: Imhof, Petra
Publisher: name: Freie Universität Berlin
Year: 2014
Subjects: subject: 500 Naturwissenschaften und Mathematik::530 Physik

description: Proton transfer reactions are among the most common processes in chemistry and biology. Proton transfer between creatine and surrounding solvent water is underlying the chemical exchange saturation transfer used as a contrast in magnetic resonance imaging. The free energy barrier, determined by first- principles umbrella sampling simulations (View the MathML sourceEaDFT 3 kcal/mol) is in the same order of magnitude as the experimentally obtained activation energy. The underlying mechanism is a first proton transfer from the guanidinium group to the water pool, followed by a second transition where a proton is “transferred back” from the nearest water molecule to the deprotonated nitrogen atom of creatine.
Additional file 1: of Self-efficacy and self-management strategies in acute intermittent porphyria
Creators: name: Hammersland, Marte
name: Aasne Aarsand
name: Sandberg, Sverre
name: Andersen, Janice
Publisher: name: figshare
Year: 2019
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: Questionnaires developed for this study; English translation. Questionnaires developed to elucidate 1. Motives to undergo genetic testing for AIP and 2. Awareness and concern regarding different triggers for AIP (Original language: Norwegian). (DOCX 17 kb)
Genetic variants and increased expression of Parascaris equorum P-glycoprotein-11 in populations with decreased ivermectin susceptibility
Creators: name: Janssen, I. Jana I.
name: Krücken, Jürgen
name: Demeler, Janina
name: Basiaga, Marta
name: Kornas, Sławomir
name: Samson-Himmelstjerna, Georg Von
Publisher: name: Freie Universität Berlin
Year: 2013
Subjects: subject: 600 Technik, Medizin, angewandte Wissenschaften::630 Landwirtschaft::630 Landwirtschaft und verwandte Bereiche

description: Macrocyclic lactones (MLs) represent the major drug class for control of parasitic infections in humans and animals. However, recently reports of treatment failures became more frequent. In addition to human and ruminant parasitic nematodes this also is the case for the horse-nematode Parascaris equorum. Nevertheless, to date the molecular basis of ML resistance is still not understood. Unspecific resistance mechanisms involving transporters such as P-glycoproteins (Pgps) are expected to contribute to ML resistance in nematodes. Here, complete sequences of two P. equorum Pgps were cloned and identified as orthologs of Caenorhabditis elegans Ppg-11 and an unnamed Caenorhabditis briggsae Pgp designated as Pgp-16 using phylogenetic analysis. Quantitative real-time PCR was used to compare expression between tissues. Significantly higher PeqPgp-11 expression was found in the gut for both genders, whereas for PeqPgp-16 the body wall was identified as predominant expression site. Furthermore, Pgps were analyzed regarding their participation in resistance development. Using SeqDoC analyses, Pgp-sequences of P. equorum populations with different ML susceptibility were compared. This approach revealed three single nucleotide polymorphisms (SNPs) causing missense mutations in the PeqPgp-11 sequence which correlated with decreased ML susceptibility. However, no resistance associated differences in mRNA expression levels were detected between embryonated eggs of these populations. In contrast, comparison of two pre-adult groups with different ivermectin (IVM) susceptibility revealed the presence of the three SNPs and in addition statistically significant PeqPgp-11 overexpression in the group of worms with reduced susceptibility. These results indicate that Pgp-11 might be involved in IVM resistance in P. equorum as it shows increased expression in an IVM exposed life-cycle stage of an IVM resistant population as well as occurrence of putatively resistance associated SNPs in populations with reduced IVM susceptibility. These SNPs are promising diagnostic candidates for detection of ML resistance with potential also for other parasitic nematode species.
Flux ratios as a probe of dark substructures in quadruple-image gravitational lenses
Creators: name: Metcalf, R. Benton
name: Zhao, HongSheng
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We demonstrate that the flux ratios of 4-image lensed quasars provide a powerful means of probing the small scale structure of Dark Matter (DM) halos. A family of smooth lens models can precisely predict certain combinations of flux ratios using only the positions of the images and lens as inputs. Using 5 observed lens systems we show that real galaxies {\it cannot} be described by smooth singular isothermal ellipsoids, nor by the more general elliptical power-law potentials. Large scale distortions from the elliptical models can not yet be ruled out. Nevertheless we find, by comparing with simulations, that the data can be accounted for by a significant ($\sim 5-10%$) amount of dark substructures within a projected distance of several kpc from the center of lenses. This interpretation favors the Cold Dark Matter (CDM) model other the warm or self-interacting DM models.
description: 6 pages with 2 PS figs, resubmitted to ApJ Letter, added a figure to show the amount of substruture needed and tables of model parameters
Coelogyne cootesii M. W. Chase & Schuit. 2021, comb. nov.
Creators: name: Chase, Mark W.
name: Gravendeel, Barbara
name: Sulistyo, Bobby P.
name: Wati, Richa Kusuma
name: Schuiteman, André
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Asparagales
Orchidaceae
Coelogyne
Coelogyne cootesii

description: Coelogyne cootesii (H.A.Pedersen) M.W.Chase & Schuit., comb. nov.
 Basionym: Dendrochilum cootesii H.A.Pedersen, Lindleyana 12: 205 (1997).
 Homotypic synonym: Pseudacoridium cootesii (H.A.Pedersen) Szlach. & Marg., Polish Bot. J. 46: 114 (2001).
description: Published as part of Chase, Mark W., Gravendeel, Barbara, Sulistyo, Bobby P., Wati, Richa Kusuma & Schuiteman, André, 2021, Expansion of the orchid genus Coelogyne (Arethuseae; Epidendroideae) to include Bracisepalum, Bulleyia, Chelonistele, Dendrochilum, Dickasonia, Entomophobia, Geesinkorchis, Gynoglottis, Ischnogyne, Nabaluia, Neogyna, Otochilus, Panisea and Pholidota, pp. 94-134 in Phytotaxa 510 (2) on page 107, DOI: 10.11646/phytotaxa.510.2.1, http://zenodo.org/record/5426332
Brighter-fatter effect in near-infrared detectors -- II. Auto-correlation analysis of H4RG-10 flats
Creators: name: Choi, Ami
name: Hirata, Christopher M.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: The Wide Field Infrared Survey Telescope (WFIRST) will investigate the origins of cosmic acceleration using weak gravitational lensing at near infrared wavelengths. Lensing analyses place strict constraints on the precision of size and ellipticity measurements of the point spread function. WFIRST will use infrared detector arrays, which must be fully characterized to inform data reduction and calibration procedures such that unbiased cosmological results can be achieved. Hirata & Choi 2019 introduces formalism to connect the cross-correlation signal of different flat field time samples to non-linear detector behaviors such as the brighter fatter effect (BFE) and non-linear inter-pixel capacitance (NL-IPC), and this paper applies that framework to a WFIRST development detector, SCA 18237. We find a residual correlation signal after accounting for classical non-linearity. This residual correlation contains a combination of the BFE and NL-IPC; however, further tests suggest that the BFE is the dominant mechanism. If interpreted as a pure BFE, it suggests that the effective area of a pixel is increased by $(2.87\pm0.03)\times 10^{-7}$ (stat.) for every electron in the 4 nearest neighbors, with a rapid $\sim r^{-5.6\pm0.2}$ fall-off of the effect for more distant neighbors. We show that the IPC inferred from hot pixels contains the same large-scale spatial variations as the IPC inferred from auto-correlations, albeit with an overall offset of $\sim 0.06\%$. The NL-IPC inferred from hot pixels is too small to explain the cross-correlation measurement, further supporting the BFE hypothesis. This work presents the first evidence for the BFE in an H4RG-10 detector, demonstrates some of the useful insights that can be gleaned from flat field statistics, and represents a significant step towards calibration of WFIRST data.
description: 28 pages, 8 figures, 3 tables, version accepted by PASP
Additional file 1: of Active eukaryotes in drinking water distribution systems of ground and surface waterworks
Creators: name: Inkinen, Jenni
name: Balamuralikrishna Jayaprakash
name: Sallamaari Siponen
name: Anna-Maria HokajĂ¤Rvi
name: Pursiainen, Anna
name: Ikonen, Jenni
name: Ryzhikov, Ivan
name: TĂ¤Ubel, Martin
name: Kauppinen, Ari
name: Paananen, Jussi
name: Miettinen, Ilkka
name: Torvinen, Eila
name: Kolehmainen, Mikko
name: PitkĂ¤Nen, Tarja
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: A chart of the experimental design of the study. (PDF 100 kb)
Rotationally-Invariant Circuits: Universality with the exchange interaction and two ancilla qubits
Creators: name: Marvian, Iman
name: Liu, Hanqing
name: Hulse, Austin
Publisher: name: arXiv
Year: 2022
Subjects: subject: Quantum Physics (quant-ph)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: High Energy Physics - Theory (hep-th)
subject: Mathematical Physics (math-ph)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Universality of local unitary transformations is one of the cornerstones of quantum computing with many applications and implications that go beyond this field. However, it has been recently shown that this universality does not hold in the presence of continuous symmetries: generic symmetric unitaries on a composite system cannot be implemented, even approximately, using local symmetric unitaries on the subsystems [I. Marvian, Nature Physics (2022)]. In this work, we study qubit circuits formed from k-local rotationally-invariant unitaries and fully characterize the constraints imposed by locality on the realizable unitaries. We also present an interpretation of these constraints in terms of the average energy of states with a fixed angular momentum. Interestingly, despite these constraints, we show that, using a pair of ancilla qubits, any rotationally-invariant unitary can be realized with the Heisenberg exchange interaction, which is 2-local and rotationally-invariant. We also show that a single ancilla is not enough to achieve universality. Finally, we discuss applications of these results for quantum computing with semiconductor quantum dots, quantum reference frames, and resource theories.
description: 5 pages + 28 pages of Supplementary Material (The preliminary version). See also the related work on SU(d) symmetry in arXiv:2105.12877
Aprosthema fusicorne
Creators: name: Schedl, W.
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Argidae
Aprosthema
Aprosthema fusicorne

description: Aprosthema fusicorne (C.G. THOMSON 1871)
M a t e r i a l: 1 Korfu, Tsavrou, 29.5. u. 9.6.1965; 1 Pantokrator, 10.6.1965, in HELLÉN (1966).
 B e m e r k u n g e n:Larven an Vicia cracca nach KONTUNIEMI (1960), die Art ist in Europa weit verbreitet, auch von Griechenland bekannt (TAEGER et al. 2006).
description: Published as part of Schedl, W., 2012, Ein Beitrag zur Pflanzenwespen-Fauna der Jonischen Insel Kérkyra (Korfu) (Insecta: Hymenoptera: Symphyta), pp. 835-844 in Linzer biologische Beiträge 44 (1) on page 837, DOI: 10.5281/zenodo.5328537
Superconducting order of $\mathrm{Sr}_2\mathrm{RuO}_4$ from a three-dimensional microscopic model
Creators: name: Røising, Henrik S.
name: Scaffidi, Thomas
name: Flicker, Felix
name: Lange, Gunnar F.
name: Simon, Steven H.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We compute and compare even- and odd-parity superconducting order parameters of strontium ruthenate ($\mathrm{Sr}_2\mathrm{RuO}_4$) in the limit of weak interactions, resulting from a fully microscopic three-dimensional model including spin-orbit coupling. We find that odd-parity helical and even-parity $d$-wave order are favored for smaller and larger values of the Hund's coupling parameter $J$, respectively. Both orders are found compatible with specific heat data and the recently-reported nuclear magnetic resonance (NMR) Knight shift drop [A. Pustogow et al. Nature 574, 72 (2019)]. The chiral $p$-wave order, numerically very competitive with helical order, sharply conflicts with the NMR experiment.
description: 11 pages, 8 figures
Near-IR spectroscopy of planetary nebulae precursors
Creators: name: Garcia-Hernandez, D. A.
name: Manchado, A.
name: Garcia-Lario, P.
name: Dominguez-Tagle, C.
name: Conway, G.
name: Prada, F.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present near-IR spectroscopy of a sample of 30 IRAS sources recently identified as late AGB stars, post-AGB stars or early PNe. The spectra obtained are centered at various wavelengths covering the molecular hydrogen v=1-0 S(1) and v=2-1 S(1) emission lines, the recombination lines of hydrogen Br-gamma, Pf-gamma and Br-alpha, and the CO[v=2-0] first overtone bandhead at 2.294 microns. As a result of these observations we have increased from 4 to 13 the total number of proto-PNe detected in molecular hydrogen. When the molecular hydrogen is fluorescence-excited the detection rate is found to be directly correlated with the evolutionary stage of the central star, rather than with the nebular morphology. In contrast, shocked-excited molecular hydrogen is detected only in strongly bipolar proto-PNe, sometimes even at an early stage in the post-AGB phase. The strong correlation of shocked-excited molecular hydrogen emission with bipolarity found confirms the result previously reported by Kastner et al. (1996) in evolved PNe. However, our results show that this correlation does not exist in the case of fluorescence-excited molecular hydrogen.
description: Accepted for publication in A&A
Cosets from equivariant W-algebras
Creators: name: Creutzig, Thomas
name: Nakatsuka, Shigenori
Publisher: name: arXiv
Year: 2022
Subjects: subject: Representation Theory (math.RT)
subject: FOS: Mathematics

description: The equivariant $\mathcal{W}$-algebra of a simple Lie algebra $\mathfrak{g}$ is a BRST reduction of the algebra of chiral differential operators on the Lie group of $\mathfrak{g}$. We construct a family of vertex algebras $A[\mathfrak{g}, κ, n]$ as subalgebras of the equivariant $\mathcal{W}$-algebra of $\mathfrak{g}$ tensored with the integrable affine vertex algebra $L_n(\check{\mathfrak{g}})$ of the Langlands dual Lie algebra $\check{\mathfrak{g}}$ at level $n\in \mathbb{Z}_{>0}$. They are conformal extensions of the tensor product of an affine vertex algebra and the principal $\mathcal{W}$-algebra whose levels satisfy a specific relation.
description: 10 pages
Phenology and pollination assays of tree Stelis species in an evergreen tropical mountain rainforest in southern Ecuador
Creators: name: Correa, Priscila Nole
name: Cueva-Agila, Augusta
Publisher: name: F1000 Research Limited
Year: 2019

description: The study aimed to characterize the flowering, fructification, and leafing as phenological events of three orchid species: Stelis concinna, Stelis hallii y Stelis superbiens, in an evergreen tropical rain forest (Estación Científica San Francisco) located at 30 Km of Loja, Ecuador. Phenological events were monitoring over 18 months. The number of seeds and seed viability in different pollination assays: self pollination, hand self pollination and hand cross pollination was also studied for the same species.
Arge melanochra
Creators: name: Schedl, W.
Publisher: name: Zenodo
Year: 2012
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Argidae
Arge
Arge melanochra

description: Arge melanochra (GMELIN 1790)
M a t e r i a l: 1 Corfu, leg. Pareys, in NHMW (STROBL 1895); 1 Corfu, Temploni, 5.6.1965, Korrision, 8.6.1965, in HELLÉN (1966).
 B e m e r k u n g e n Larven z.B. an Crataegus laevigata CHEVIN (1975). Die Art ist in Europa (u.a. in Kephalinia), Kleinasien, im Kaukasus, Iran bis Zentralasien bekannt (MUCHE 1977).
description: Published as part of Schedl, W., 2012, Ein Beitrag zur Pflanzenwespen-Fauna der Jonischen Insel Kérkyra (Korfu) (Insecta: Hymenoptera: Symphyta), pp. 835-844 in Linzer biologische Beiträge 44 (1) on page 838, DOI: 10.5281/zenodo.5328537
Additional file 1: of Should I sit or stand: likelihood of adherence to messages about reducing sitting time
Creators: name: Alley, Stephanie
name: Vandelanotte, Corneel
name: Duncan, Mitch
name: Short, Camille
name: Maher, Jaclyn
name: Schoeppe, Stephanie
name: Rebar, Amanda
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Ecology
subject: FOS: Biological sciences
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: How likelihood of adherence differs as a function of demographic, psychosocial and behavioural characteristics. (DOCX 18 kb)
Does the fine structure constant vary? A detailed investigation into systematic effects
Creators: name: Murphy, M. T.
name: Webb, J. K.
name: Flambaum, V. V.
name: Curran, S. J.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We have previously presented 5.7-sigma evidence for a smaller alpha at redshifts 0.2 < z_abs < 3.7 from a sample of 128 Keck/HIRES quasar absorption systems: da/a = (-0.57 +/- 0.10) x 10^{-5}. A non-zero da/a manifests itself as a distinct pattern of shifts in the measured absorption line wavelengths. The statistical error is now small: we do detect small line shifts in the HIRES data. Whether these shifts are due to systematic errors or due to real variation in alpha is now the central question. Here we summarize the two potentially most important systematic effects: atmospheric dispersion and isotopic abundance evolution. Previously, these have been difficult to quantify/model but here we find that neither of them can explain our results. Furthermore, the HIRES spectra themselves contain no evidence for these effects. Independent measurements of da/a with a different telescope and spectrograph are now crucial if we are to rule out or confirm the present evidence for a variable alpha.
description: 6 pages, 6 EPS figures. Talk presented at JENAM2002 workshop on The Cosmology of Extra Dimensions and Varying Fundamental Constants. To appear in the proceedings
Fast generation of calculated ADF-EDX scattering cross-sections under channelling conditions
Creators: name: Zhang, Zezhong
name: Lobato, Ivan
name: De Backer, Annick
name: Van Aert, Sandra
name: Nellist, Peter
Publisher: name: arXiv
Year: 2022
Subjects: subject: Applied Physics (physics.app-ph)
subject: Materials Science (cond-mat.mtrl-sci)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences
subject: J.2

description: Advanced materials often consist of multiple elements which are arranged in a complicated structure. Quantitative scanning transmission electron microscopy is useful to determine the composition and thickness of nanostructures at the atomic scale. However, significant difficulties remain to quantify mixed columns by comparing the resulting atomic resolution images and spectroscopy data with multislice simulations where dynamic scattering needs to be taken into account. The combination of the computationally intensive nature of these simulations and the enormous amount of possible mixed column configurations for a given composition indeed severely hamper the quantification process. To overcome these challenges, we here report the development of an incoherent non-linear method for the fast prediction of ADF-EDX scattering cross-sections of mixed columns under channelling conditions. We first explain the origin of the ADF and EDX incoherence from scattering physics suggesting a linear dependence between those two signals in the case of a high-angle ADF detector. Taking EDX as a perfect incoherent reference mode, we quantitatively examine the ADF longitudinal incoherence under different microscope conditions using multislice simulations. Based on incoherent imaging, the atomic lensing model previously developed for ADF is now expanded to EDX, which yields ADF-EDX scattering cross-section predictions in good agreement with multislice simulations for mixed columns in a core-shell nanoparticle and a high entropy alloy. The fast and accurate prediction of ADF-EDX scattering cross-sections opens up new opportunities to explore the wide range of ordering possibilities of heterogeneous materials with multiple elements.
4mu spectra of AGB stars I: Observations
Creators: name: Lebzelter, T.
name: Hinkle, K. H.
name: Aringer, B.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present times series of high resolution spectra of AGB variables at 4mu. Line profiles from the major contributors to the spectra of oxygen rich stars at 4mu, OH, H$_2$O, HCl and SiO, are examined. The velocity as well as shape variations of these profiles with time are discussed. The line profiles investigated frequently have emission and multiple absorption components. The changes with time of the 4mu region lines do not always follow the cyclic variability seen in NIR spectra and in the photometric light curve. We interpret and discuss the results qualitatively considering comparing the spectral variability with that of the well behaved 1.6mu region and of dynamical model atmospheres. Miras and semiregular variables are compared. The origins of non-periodic behavior are discussed, including the role of spatial inhomogeneities in the stellar atmosphere.
description: 14 pages, 12 figures, accepted for publication in A&A
Deep learning enabled multi-wavelength spatial coherence microscope for the classification of malaria-infected stages with limited labelled data size
Creators: name: Singla, Neeru
name: Srivastava, Vishal
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Medical Physics (physics.med-ph)
subject: FOS: Computer and information sciences
subject: FOS: Physical sciences

description: Malaria is a life-threatening mosquito-borne blood disease, hence early detection is very crucial for health. The conventional method for the detection is a microscopic examination of Giemsa-stained blood smears, which needs a highly trained skilled technician. Automated classifications of different stages of malaria still a challenging task, especially having poor sensitivity in detecting the early trophozoite and late trophozoite or schizont stage with limited labelled datasize. The study aims to develop a fast, robust and fully automated system for the classification of different stages of malaria with limited data size by using the pre-trained convolutional neural networks (CNNs) as a classifier and multi-wavelength to increase the sample size. We also compare our customized CNN with other well-known CNNs and shows that our network have a comparable performance with less computational time. We believe that our proposed method can be applied to other limited labelled biological datasets.
Fitting B/C cosmic-ray data in the AMS-02 era: A cookbook
Creators: name: Derome, L.
name: Maurin, D.
name: Salati, P.
name: Boudaud, M.
name: Génolini, Y.
name: Kunzé, P.
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: AMS-02 on the International Space Station has been releasing data of unprecedented accuracy. This poses new challenges for their interpretation. We refine the methodology to get a statistically sound determination of the cosmic-ray propagation parameters. We inspect the numerical precision of the model calculation, nuclear cross-section uncertainties, and energy correlations in data systematic errors. We used the 1D diffusion model in USINE. Our $χ^2$ analysis includes a covariance matrix of errors for AMS-02 systematics and nuisance parameters to account for cross-section uncertainties. Mock data were used to validate some of our choices. We show that any mis-modelling of nuclear cross-section values or the energy correlation length of the covariance matrix of errors biases the analysis. It also makes good models ($χ^2_{\rm min}/{\rm dof}\approx1$) appear as excluded ($χ^2_{\rm min}/{\rm dof}\gg1$). We provide a framework to mitigate these effects (AMS-02 data are interpreted in a companion paper). New production cross-section data and the publication by the AMS-02 collaboration of a covariance matrix of errors for each data set would be an important step towards an unbiased view of cosmic-ray propagation in the Galaxy.
description: 24 pages, 23 figures, 3 tables: affiliations corrected
Additional file 1: of Ideal vs. real: a systematic review on handling covariates in randomized controlled trials
Creators: name: Ciolino, Jody
name: Palac, Hannah
name: Yang, Amy
name: Vaca, Mireya
name: Belli, Hayley
Publisher: name: figshare
Year: 2019
Subjects: subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Cancer
subject: Inorganic Chemistry
subject: Science Policy
subject: Plant Biology
subject: FOS: Biological sciences

description: Allocation Techniques Review: Data Dictionary Codebook". This file contains a data dictionary (codelists, variable names, field labels, etc.) for our data collection tools used to extract the data from each article our search returned. There were two forms: “Screen” and “Review”. Overall, there were 43 individual data fields. The Screen form contains relevant fields that capture whether each article was retained for further review and data extraction. If not, we captured the reason the article was excluded (field #4, exclude_reason). The Review form contains the data dictionary for each data element extracted from each article reviewed in detail and included in analyses. After review and completion of both forms for all articles, we exported all data in the REDCap database for summarization and analyses reported in this manuscript. (PDF 126 kb)
Coelogyne cordata M. W. Chase & Schuit. 2021, comb. nov.
Creators: name: Chase, Mark W.
name: Gravendeel, Barbara
name: Sulistyo, Bobby P.
name: Wati, Richa Kusuma
name: Schuiteman, André
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Asparagales
Orchidaceae
Coelogyne
Coelogyne cordata

description: Coelogyne cordata (H.A.Pedersen) M.W.Chase & Schuit., comb. nov.
 Basionym: Dendrochilum cordatum H.A.Pedersen, Lindleyana 16: 231 (2001).
description: Published as part of Chase, Mark W., Gravendeel, Barbara, Sulistyo, Bobby P., Wati, Richa Kusuma & Schuiteman, André, 2021, Expansion of the orchid genus Coelogyne (Arethuseae; Epidendroideae) to include Bracisepalum, Bulleyia, Chelonistele, Dendrochilum, Dickasonia, Entomophobia, Geesinkorchis, Gynoglottis, Ischnogyne, Nabaluia, Neogyna, Otochilus, Panisea and Pholidota, pp. 94-134 in Phytotaxa 510 (2) on page 107, DOI: 10.11646/phytotaxa.510.2.1, http://zenodo.org/record/5426332
The generalised distribution semantics and projective families of distributions
Creators: name: Weitkämper, Felix
Publisher: name: arXiv
Year: 2022
Subjects: subject: Artificial Intelligence (cs.AI)
subject: Databases (cs.DB)
subject: Programming Languages (cs.PL)
subject: FOS: Computer and information sciences

description: We generalise the distribution semantics underpinning probabilistic logic programming by distilling its essential concept, the separation of a free random component and a deterministic part. This abstracts the core ideas beyond logic programming as such to encompass frameworks from probabilistic databases, probabilistic finite model theory and discrete lifted Bayesian networks. To demonstrate the usefulness of such a general approach, we completely characterise the projective families of distributions representable in the generalised distribution semantics and we demonstrate both that large classes of interesting projective families cannot be represented in a generalised distribution semantics and that already a very limited fragment of logic programming (acyclic determinate logic programs) in the determinsitic part suffices to represent all those projective families that are representable in the generalised distribution semantics at all.
title: Educators’ Attitudes towards Inclusive Education in Bangalore, India
Creators: name: Michael, Nisha Jacintha
Publisher: name: Griffith University
Year: 2017
Subjects: subject: Theory of planned behavior
subject: Education, Bangalore, India
subject: Teachers, Bangalore, India

description: Advocacy of inclusive education is a key part of the United Nations’ broader effort to encourage countries across the world to commit to the provision of 'education for all'. This United Nations educational policy is directed towards promoting social justice and equality and erasing the invisible and tangible barriers that segregate the marginalized sections of society from quality education. The Government of India has endorsed this broad objective and recognized the urgent need to provide equal opportunities to all learners. This commitment becomes complicated when considered within a political and social context that has simultaneously endorsed the significance of education for social development while limiting access to education for various groups, including students with disabilities. In this complex situation teachers’ attitudes towards the implementation of the inclusive education have a major impact upon how students with disabilities actually experience education. Yet relatively little is known about Indian teachers’ attitudes to inclusive education principles and practices and/or how they believe they are able to take up the United Nations’ and the government of India’s apparent commitment to meeting the needs of students with disabilities. In response to this gap in literature and policy, the aim of this mixed method study was to investigate pre-service teachers’ and in-service teachers’ attitudes towards the implementation of inclusive education in the city of Bangalore within Karnataka State, India. The project involved the use of a 30 items questionnaire followed by semi-structured interviews with participants from several groups: pre-service teachers with a special education focus; pre-service, generalist teachers; in-service teachers working in general education settings; and in-service teachers working in special education. This data set was analysed by drawing upon the Theory of Planned Behavior advocated by Ajzen (1991). This analysis highlighted teachers’ beliefs and how these shape their attitudes towards, and actions regarding, inclusive education.
Combined Effects of Rotation and Age Spreads on Extended Main Sequence Turn Offs
Creators: name: Gossage, Seth
name: Conroy, Charlie
name: Dotter, Aaron
name: Cabrera-Ziri, Ivan
name: Dolphin, Andrew E.
name: Bastian, Nate
name: Dalcanton, Julianne J.
name: Goudfrooij, Paul
name: Johnson, L. Clifton
name: Williams, Benjamin F.
name: Rosenfield, Philip
name: Kalirai, Jason
name: Fouesneau, Morgan
Publisher: name: arXiv
Year: 2019
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: The extended main sequence turn offs (eMSTOs) of several young to intermediate age clusters are examined in the Magellanic Clouds and the Milky Way. We explore the effects of extended star formation (eSF) and a range of stellar rotation rates on the behavior of the color-magnitude diagram (CMD), paying particular attention to the MSTO. We create synthetic stellar populations based on MESA stellar models to simulate observed Hubble Space Telescope and Gaia star cluster data. We model the effect of rotation as a non-parametric distribution, allowing for maximum flexibility. In our models the slow rotators comprise the blueward, and fast rotators the redward portion of the eMSTO. We simulate data under three scenarios: non-rotating eSF, a range of rotation rates with a single age, and a combination of age and rotation effects. We find that two of the five clusters (the youngest and oldest) favor an age spread, but these also achieve the overall worst fits of all clusters. The other three clusters show comparable statistical evidence between rotation and an age spread. In all five cases, a rotation rate distribution alone is capable of qualitatively matching the observed eMSTO structure. In future work, we aim to compare our predicted Vsin(i) with observations in order to better constrain the physics related to stellar rotation.
description: 17 pages, 11 figures
Additional file 5 of Characteristics and interplay of esophageal microbiota in esophageal squamous cell carcinoma
Creators: name: Lin, Zheng
name: Rao, Wenqing
name: Xiang, Zhisheng
name: Zeng, Qiaoyan
name: Liu, Shuang
name: Yu, Kaili
name: Zhou, Jinsong
name: Wang, Jianwen
name: Chen, Weilin
name: Chen, Yuanmei
name: Peng, Xiane
name: Hu, Zhijian
Publisher: name: figshare
Year: 2022
Subjects: Physical Sciences not elsewhere classified
Medicine
Cell Biology
Chemical Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Cancer

description: Additional file 5: Table S3. The characteristics of ESCC patients from Zhangzhou City (n = 50) and other regions (n = 70).
Retrieving fields from proton radiography without source profiles
Creators: name: Kasim, M. F.
name: Bott, A. F. A.
name: Tzeferacos, P.
name: Lamb, D. Q.
name: Gregori, G.
name: Vinko, S. M.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Plasma Physics (physics.plasm-ph)
subject: Computation (stat.CO)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: Proton radiography is a technique in high energy density science to diagnose magnetic and/or electric fields in a plasma by firing a proton beam and detecting its modulated intensity profile on a screen. Current approaches to retrieve the integrated field from the modulated intensity profile require the unmodulated beam intensity profile before the interaction, which is rarely available experimentally due to shot-to-shot variability. In this paper, we present a statistical method to retrieve the integrated field without needing to know the exact source profile. We apply our method to experimental data, showing the robustness of our approach. Our proposed technique allows not only for the retrieval of the path-integrated fields, but also of the statistical properties of the fields.
Quantum spherical codes
Creators: name: Jain, Shubham P.
name: Iosue, Joseph T.
name: Barg, Alexander
name: Albert, Victor V.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Physics (quant-ph)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Information Theory (cs.IT)
subject: Metric Geometry (math.MG)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences
subject: FOS: Mathematics

description: We introduce a framework for constructing quantum codes defined on spheres by recasting such codes as quantum analogues of the classical spherical codes. We apply this framework to bosonic coding, obtaining multimode extensions of the cat codes that can outperform previous constructions while requiring a similar type of overhead. Our polytope-based cat codes consist of sets of points with large separation that at the same time form averaging sets known as spherical designs. We also recast concatenations of CSS codes with cat codes as quantum spherical codes, revealing a new way to autonomously protect against dephasing noise.
description: 5 + 12 pages, 3 figures, 5 tables
The Galactic Habitable Zone I. Galactic Chemical Evolution
Creators: name: Gonzalez, Guillermo
name: Brownlee, Donald
name: Ward, Peter
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We propose the concept of a "Galactic Habitable Zone" (GHZ). Analogous to the Circumstellar Habitable Zone (CHZ), the GHZ is that region in the Milky Way where an Earth-like planet can retain liquid water on its surface and provide a long-term habitat for animal-like aerobic life. In this paper we examine the dependence of the GHZ on Galactic chemical evolution. The single most important factor is likely the dependence of terrestrial planet mass on the metallicity of its birth cloud. We estimate, very approximately, that a metallicity at least half that of the Sun is required to build a habitable terrestrial planet. The mass of a terrestrial planet has important consequences for interior heat loss, volatile inventory, and loss of atmosphere. A key issue is the production of planets that sustain plate tectonics, a critical recycling process that provides feedback to stabilize atmospheric temperatures on planets with oceans and atmospheres. Due to the more recent decline from the early intense star formation activity in the Milky Way, the concentration in the interstellar medium of the geophysically important radioisotopes, $^{40}$K, $^{235, 238}$U, $^{232}$Th, has been declining relative to Fe, an abundant element in the Earth. Also likely important are the relative abundances of Si and Mg to Fe, which affects the mass of the core relative to the mantle in a terrestrial planet. All these elements and isotopes vary with time and location in the Milky Way; thus, planetary systems forming in other locations and times in the Milky Way with the same metallicity as the Sun will not necessarily form habitable Earth-like planets.
description: 49 pages of text, and 8 figures; to be published in Icarus
Additional file 5: of Measuring the frequency and variation of unnecessary care across Canada
Creators: name: Bouck, Zachary
name: Pendrith, Ciara
name: Xi-Kuan Chen
name: Frood, Jennifer
name: Reason, Ben
name: Khan, Tanya
name: Costante, Alicia
name: Kirkham, Kyle
name: Born, Karen
name: Levinson, Wendy
name: R. Bhatia
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer

description: Table S5. Screening mammography respondent-level regression model results. Association between respondent characteristics and reporting a screening mammogram in the past two years for Canadian women aged 40â 49 at average-risk for breast cancer â weighted. (DOCX 13 kb)
Bar-Halo Interaction and Bar Growth
Creators: name: Athanassoula, E.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: I show that strong bars can grow in galactic discs, even when the latter are immersed in haloes whose mass within the disc radius is comparable to, or larger than, the mass of the disc. I argue that this is due to the response of the halo and in particular to the destabilising influence of the halo resonant stars. Via this instability mechanism the halo can stimulate, rather than restrain, the growth of the bar.
description: 10 pages, 2 figures, accepted for ApJ Letters
Phenomenology of Higgs bosons in inverse seesaw model with Type-X two Higgs doublet at the LHC
Creators: name: Bandyopadhyay, Priyotosh
name: Chun, Eung Jin
name: Mandal, Rusa
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Type-X two Higgs doublet model is known to explain the muon $g-2$ anomaly with a relatively light charged Higgs boson at large $\tanβ$. The light charged Higgs boson has been searched in the main $τν$ mode at the colliders. Invoking a scenario of inverse seesaw as the origin of neutrino masses and mixing, the charged Higgs boson can decay additionally to right-handed neutrinos which leads to interesting phenomenology. Considering generic lepton flavour violating signatures at the final states, a $5σ$ discovery can be achieved with the early data of LHC, at 14 TeV, for relatively large inverse seesaw Yukawa coupling $Y_N$. The very light pseudoscalar and charged Higgs boson mass reconstruction are performed using the new modes and the results look promising. The inverse seesaw Yukawa coupling is shown to be probed down to $Y_N \sim 0.2$ at HL LHC with 3000 fb$^{-1}$.
description: 20 pages, 8 figures and 9 tables, reference added
Velocity dispersions of dwarf spheroidal galaxies: dark matter versus MOND
Creators: name: Lokas, Ewa L.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present predictions for the line-of-sight velocity dispersion profiles of dwarf spheroidal galaxies and compare them to observations in the case of the Fornax dwarf. The predictions are made in the framework of standard dynamical theory of spherical systems with different velocity distributions. The stars are assumed to be distributed according to Sersic laws with parameters fitted to observations. We compare predictions obtained assuming the presence of dark matter haloes (with density profiles adopted from N-body simulations) versus those resulting from Modified Newtonian Dynamics (MOND). If the anisotropy of velocity distribution is treated as a free parameter observational data for Fornax are reproduced equally well by models with dark matter and with MOND. If stellar mass-to-light ratio of $1 M_{\sun}/L_{\sun}$ is assumed, the required mass of the dark halo is $1.5 \times 10^9 M_{\sun}$, two orders of magnitude bigger than the mass in stars. The derived MOND acceleration scale is $a_0 = 2.1 \times 10^{-8}$ cm/s$^2$. In both cases a certain amount of tangential anisotropy in the velocity distribution is needed to reproduce the shape of the velocity dispersion profile in Fornax.
description: 5 pages, 4 figures, revised version accepted by MNRAS Letters. A Figure showing best fits for Draco and Ursa Minor added. Draco can pose a serious problem for MOND!
Coelogyne cornuta M. W. Chase & Schuit. 2021, comb. nov.
Creators: name: Chase, Mark W.
name: Gravendeel, Barbara
name: Sulistyo, Bobby P.
name: Wati, Richa Kusuma
name: Schuiteman, André
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Liliopsida
Asparagales
Orchidaceae
Coelogyne
Coelogyne cornuta

description: Coelogyne cornuta (Blume) M.W.Chase & Schuit., comb. nov.
 Basionym: Dendrochilum cornutum Blume, Bijdr. Fl. Ned. Ind.: 399 (1826).
 Homotypic synonyms: Platyclinis cornuta (Blume) Benth. ex Hemsl., Gard. Chron., n.s., 16: 656 (1881). Acoridium cornutum (Blume) Rolfe, Orchid Rev. 12: 220 (1904).
 Heterotypic synonyms: Dendrochilum auritum Rchb. f., Bonplandia (Hannover) 4: 329 (1856). Acoridium auritum (Rchb.f.) Rolfe, Orchid Rev. 12: 219 (1904). Dendrochilum erosum Rchb. f. in W.G.Walpers, Ann. Bot. Syst. 6: 241 (1861). Acoridium erosum (Rchb.f.) Rolfe, Orchid Rev. 12: 220 (1904).
description: Published as part of Chase, Mark W., Gravendeel, Barbara, Sulistyo, Bobby P., Wati, Richa Kusuma & Schuiteman, André, 2021, Expansion of the orchid genus Coelogyne (Arethuseae; Epidendroideae) to include Bracisepalum, Bulleyia, Chelonistele, Dendrochilum, Dickasonia, Entomophobia, Geesinkorchis, Gynoglottis, Ischnogyne, Nabaluia, Neogyna, Otochilus, Panisea and Pholidota, pp. 94-134 in Phytotaxa 510 (2) on page 107, DOI: 10.11646/phytotaxa.510.2.1, http://zenodo.org/record/5426332
Optimizing many-body atomic descriptors for enhanced computational performance of machine learning based interatomic potentials
Creators: name: Caro, Miguel A.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computational Physics (physics.comp-ph)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: We explore different ways to simplify the evaluation of the smooth overlap of atomic positions (SOAP) many-body atomic descriptor [Bartók et al., Phys. Rev. B 87, 184115 (2013)]. Our aim is to improve the computational efficiency of SOAP-based similarity kernel construction. While these improved atomic descriptors can be used for general characterization and interpolation of atomic properties, their main target application is accelerated evaluation of machine-learning-based interatomic potentials within the Gaussian approximation potential (GAP) framework [Bartók et al., Phys. Rev. Lett. 104, 136403 (2010)]. We achieve this objective by expressing the atomic densities in an approximate separable form, which decouples the radial and angular channels. We then express the elements of the SOAP descriptor (i.e., the expansion coefficients for the atomic densities) in analytical form given a particular choice of radial basis set. Finally, we derive recursion formulas for the expansion coefficients. This new SOAP-based descriptor allows for tenfold speedups compared to previous implementations, while improving the stability of the radial expansion for distant atomic neighbors, without degradation of the interpolation power of GAP models.