cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 13: of Diversity and signature of small RNA in different bodily fluids using next generation sequencing
Creators: name: El-Mogy, Mohamed
name: Lam, Bernard
name: Haj-Ahmad, Taha
name: McGowan, Shannon
name: Yu, Darrick
name: Nosal, Lucas
name: Nezar Rghei
name: Roberts, Pam
name: Haj-Ahmad, Yousef
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 60506 Virology
subject: Computational Biology

description: Table S9. piRNAs that represent an average of 1% or more of the entire piRNA counts of each bodily fluid. (DOCX 18Â kb)
title: 01_2294
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
On String Tunneling in Power Law Inflationary Universes
Creators: name: Larsen, A. L.
name: Axenides, Minos
Publisher: name: arXiv
Year: 1993
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We consider the evolution of circular string loops in power law expanding universes represented by a spatially flat Friedman-Robertson-Walker metric with scale factor $a(t)\propto t^p$ where $t$ is the cosmic time and $p\geq 0$. Our main result is the existence of a "magic" power $p_m=3+2\sqrt{2}$. In spacetimes with $pp_m$, however, we find additional types of solutions. They include configurations which contract from a positive initial radius to a minimal one and then expand forever. Their existence we interpret as an indication for the presence of a finite potential barrier. Equivalently the new solutions signal string nucleation and tunneling, phenomena recently shown to occur in de Sitter space.
description: Latex, 9 pages + 4 figures (not included), NBI-HE-93-50
On the genealogy and coalescence times of Bienaymé-Galton-Watson branching processes
Creators: name: Grosjean, Nicolas
name: Huillet, Thierry
Publisher: name: arXiv
Year: 2017
Subjects: subject: Probability (math.PR)
subject: Populations and Evolution (q-bio.PE)
subject: FOS: Mathematics
subject: FOS: Biological sciences

description: Coalescence processes have received a lot of attention in the context of conditional branching processes with fixed population size and non-overlapping generations. Here we focus on similar problems in the context of the standard unconditional Bienaymé-Galton-Watson branching processes, either (sub)-critical or supercritical. Using an analytical tool, we derive the structure of some counting aspects of the ancestral genealogy of such processes, including: the transition matrix of the ancestral count process and an integral representation of various coalescence times distributions, such as the time to most recent common ancestor of a random sample of arbitrary size, including full size. We illustrate our results on two important examples of branching mechanisms displaying either finite or infinite reproduction mean, their main interest being to offer a closed form expression for their probability generating functions at all times. Large time behaviors are investigated.
description: 23 pages. This is an Accepted Manuscript of an article to be published by Taylor & Francis in Stochastic Models
Additional file 2 of Noise constrains the evolution of call frequency contours in flowing water frogs: a comparative analysis in two clades
Creators: name: Zhao, Longhui
name: Santos, Juan C.
name: Wang, Jichao
name: Ran, Jianghong
name: Tang, Yezhong
name: Cui, Jianguo
Publisher: name: figshare
Year: 2021
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Additional file 2: Table S2. Name, sound pressure levels (SPLs), habitat types and data sources for all species.
Quantum and Topological Criticalities of Lifshitz Transition in Two-Dimensional Correlated Electron Systems
Creators: name: Yamaji, Youhei
name: Misawa, Takahiro
name: Imada, Masatoshi
Publisher: name: arXiv
Year: 2006
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We study electron correlation effects on quantum criticalities of Lifshitz transitions at zero temperature, using the mean-field theory based on a preexisting symmetry-broken order, in two-dimensional systems. In the presence of interactions, Lifshitz transitions may become discontinuous in contrast to the continuous transition in the original proposal by Lifshitz for noninteracting systems. We focus on the quantum criticality at the endpoint of discontinuous Lifshitz transitions, which we call the marginal quantum critical point. It shows remarkable criticalities arising from its nature as a topological transition. At the point, for the canonical ensemble, the susceptibility of the order parameter chi is found to diverge as ln 1/|delta Delta| when the ``neck'' of the Fermi surface collapses at the van Hove singularity. More remarkably, it diverges as 1/|delta Delta| when the electron/hole pocket of the Fermi surface vanishes. Here delta Delta is the amplitude of the mean field measured from the Lifshitz critical point. On the other hand, for the grand canonical ensemble, the discontinuous transitions appear as the electronic phase separation and the endpoint of the phase separation is the marginal quantum critical point. Especially, when a pocket of the Fermi surface vanishes, the uniform charge compressibility kappa diverges as 1/|delta n|, instead of chi, where delta n is the electron density measured from the critical point. Accordingly, Lifshitz transition induces large fluctuations represented by diverging chi and/or kappa. Such fluctuations must be involved in physics of competing orders and influence diversity of strong correlation effects.
description: 16 pages, 15 figures, to appear in Jounal of the Physical Society of Japan
On Nonabelian Duality
Creators: name: Giveon, Amit
name: Rocek, Martin
Publisher: name: arXiv
Year: 1993
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We show that nonabelian duality is not a symmetry of a conformal field theory, but rather a symmetry between different theories. We expose a nonlocal symmetry of nonabelian dual theories. We show how, in the case with vanishing isotropy, it can be used to find the inverse dual transformation. Finally, we consider a number of new examples.
description: 19 pages, ITP-SB-93-44 and RI-152-93. (revised version: note added, other minor changes)
Competition of coarsening and shredding of clusters in a driven diffusive lattice gas
Creators: name: Kunwar, Ambarish
name: Chowdhury, Debashish
name: Schadschneider, Andreas
name: Nishinari, Katsuhiro
Publisher: name: arXiv
Year: 2006
Subjects: subject: Biological Physics (physics.bio-ph)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Quantitative Methods (q-bio.QM)
subject: FOS: Physical sciences
subject: FOS: Biological sciences

description: We investigate a driven diffusive lattice gas model with two oppositely moving species of particles. The model is motivated by bi-directional traffic of ants on a pre-existing trail. A third species, corresponding to pheromones used by the ants for communication, is not conserved and mediates interactions between the particles. Here we study the spatio-temporal organization of the particles. In the uni-directional variant of this model it is known to be determined by the formation and coarsening of ``loose clusters''. For our bi-directional model, we show that the interaction of oppositely moving clusters is essential. In the late stages of evolution the cluster size oscillates because of a competition between their `shredding' during encounters with oppositely moving counterparts and subsequent "coarsening" during collision-free evolution. We also establish a nontrivial dependence of the spatio-temporal organization on the system size.
Fluorescence branching ratios and magnetic tuning of the visible spectrum of SrOH
Creators: name: Nguyen, Duc-Trung
name: Steimle, Timothy C.
name: Kozyryev, Ivan
name: Huang, Meng
name: McCoy, Anne B.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: The magnetic tuning of the low rotational levels in the Xsigma+(0,0,0), Api(0,0,0), and Bsigma+ (0,0,0) electronic states of strontium hydroxide, SrOH, have been experimentally investigated using high resolution optical Zeeman spectroscopy of a cold molecular beam sample. The observed Zeeman shifts and splittings are successfully modeled using a traditional effective Hamiltonian approach to account for the interaction between the Api and Bsigma+ states. The determined magnetic g-factors for the Xsigma+, Api , and Bsigma+ states are compared to those predicted by perturbation theory. The dispersed fluorescence resulting from laser excitation of rotationally resolved branch features of the Bsigma+ (0,0,0)
description: Article: 37 pages of text; 4 tables and 9 figures; Supplemental material: 4 tables and description of DFT calulation
Additional file 3 of Noise constrains the evolution of call frequency contours in flowing water frogs: a comparative analysis in two clades
Creators: name: Zhao, Longhui
name: Santos, Juan C.
name: Wang, Jichao
name: Ran, Jianghong
name: Tang, Yezhong
name: Cui, Jianguo
Publisher: name: figshare
Year: 2021
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Additional file 3: Table S3. GenBank accession numbers for all sampled species and outgroup Buergeria buergeri.
Electron-electron interaction in carbon nanostructures
Creators: name: Romanenko, A. I.
name: Anikeeva, O. B.
name: Buryakov, T. I.
name: Tkachev, E. N.
name: Okotrub, A. V.
name: Kuznetsov, V. L.
name: Usoltseva, A. N.
name: Kotosonov, A. S.
Publisher: name: arXiv
Year: 2006
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: The electron-electron interaction in carbon nanostructures was studied. A new method which allows to determine the electron-electron interaction constant $λ_c$ from the analysis of quantum correction to the magnetic susceptibility and the magnetoresistance was developed. Three types of carbon materials: arc-produced multiwalled carbon nanotubes (arc-MWNTs), CVD-produced catalytic multiwalled carbon nanotubes (c-MWNTs) and pyrolytic carbon were used for investigation. We found that $λ_c$=0.2 for arc-MWNTs (before and after bromination treatment); $λ_c$ = 0.1 for pyrolytic graphite; $λ_c >$ 0 for c-MWNTs. We conclude that the curvature of graphene layers in carbon nanostructures leads to the increase of the electron-electron interaction constant $λ_c$.
description: 12 pages, 18 figures, to be published in the Proceedings of the NATO Advanced Research Workshop on Electron Correlation in New Materials and Nanosystems, NATO Science Series II, Springer, 2006
Additional file 3: of The effects of repeated whole genome duplication events on the evolution of cytokinin signaling pathway
Creators: name: Kaltenegger, Elisabeth
name: Leng, Svetlana
name: Heyl, Alexander
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Figure S1. ML Tree CHKs 1, Figure S2. Mr. Bayes CHKs, Figure S3. Reconciled ML tree CHKs, Figure S4. Reconciled ML tree HPTs, Figure S5. ML tree RRBs, Figure S6. Mr. Bayes tree RRBs, Figure S7. Cladogram comparison RRBs. (PDF 2407Â kb)
Biconical Outflow in the Seyfert Galaxy NGC 2992
Creators: name: Veilleux, S.
name: Shopbell, P. L.
name: Miller, S. T.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We report on a detailed kinematic study of the galactic-scale outflow in the Seyfert galaxy NGC 2992. The TAURUS-2 Imaging Fabry-Perot Interferometer was used on the Anglo-Australian 3.9-m telescope to derive the two-dimensional velocity field of the Halpha-emitting gas over the central arcminute of NGC 2992. The complete two-dimensional coverage of the data combined with simple kinematic models of rotating axisymmetric disks allows us to differentiate the outflowing material from the line-emitting material associated with the galactic disk. The kinematics of the disk component out to R = 3.0 kpc are well modeled by pure circular rotation. The outflow component is distributed into two wide cones with opening angle of 125 -- 135 degrees and extending 2.8 kpc (18") on both sides of the nucleus at nearly right angles to the disk kinematic major axis. The outflow on the SE side of the nucleus is made of two distinct kinematic components interpreted as the front and back walls of a cone. The azimuthal velocity gradient in the back-wall component reflects residual rotational motion which indicates either that the outflowing material was lifted from the disk or that the underlying galactic disk is contributing slightly to this component. A single outflow component is detected in the NW cone. The most likely energy source for this outflow is a hot bipolar thermal wind powered on sub-kpc scale by the AGN and diverted along the galaxy minor axis by the pressure gradient of the ISM in the host galaxy. The data are not consistent with a starburst-driven wind or a collimated outflow powered by radio jets. (abridged)
description: 28 pages including 8 figures (2 ps, 6 jpeg), Latex w/ aaspp4.sty
Energy Dependent Features of X-ray Signals in a GridPix Detector
Creators: name: Krieger, Christoph
name: Kaminski, Jochen
name: Vafeiadis, Theodoros
name: Desch, Klaus
Publisher: name: arXiv
Year: 2017
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: FOS: Physical sciences

description: We report on the calibration of an argon/isobutane (97.7 %/2.3 %)-filled GridPix detector with soft X-rays (277 eV to 8 keV) using the variable energy X-ray source of the CAST Detector Lab at CERN. We study the linearity and energy resolution of the detector using both the number of hit pixels and the total measured charge as energy measures. For the latter, the energy resolution σ_E/E is better than 10 % (20 %) for energies above 2 keV (0.5 keV). Several characteristics of the recorded events are studied.
description: 19 pages, 10 figures, 5 tables
Quantization and the Issue of Time for Various Two-Dimensional Models of Gravity
Creators: name: Strobl, Thomas
Publisher: name: arXiv
Year: 1993
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: It is shown that the models of 2D Liouville Gravity, 2D Black Hole- and $R^2$-Gravity are {\em embedded} in the Katanaev-Volovich model of 2D NonEinsteinian Gravity. Different approaches to the formulation of a quantum theory for the above systems are then presented: The Dirac constraints can be solved exactly in the momentum representation, the path integral can be integrated out, and the constraint algebra can be {\em explicitely} canonically abelianized, thus allowing also for a (superficial) reduced phase space quantization. Non--trivial dynamics are obtained by means of time dependent gauges. All of these approaches lead to the {\em same} finite dimensional quantum mechanical system.
description: 4 pages, LaTeX, Talk given at the Journ\'ees Relativistes '93, TUW9309
Additional file 4 of Noise constrains the evolution of call frequency contours in flowing water frogs: a comparative analysis in two clades
Creators: name: Zhao, Longhui
name: Santos, Juan C.
name: Wang, Jichao
name: Ran, Jianghong
name: Tang, Yezhong
name: Cui, Jianguo
Publisher: name: figshare
Year: 2021
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Additional file 4: Figure S1. Phylogenetic relationships of all species based on two mitochondrial genes and three nuclear genes.
Spin dynamics in molecular ring nanomagnets: Significant effect of acoustic phonons and magnetic anisotropies
Creators: name: Yamamoto, Shoji
name: Hikihara, Toshiya
Publisher: name: arXiv
Year: 2006
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The nuclear spin-lattice relaxation rate 1/T_1_ is calculated for magnetic ring clusters by fully diagonalizing their microscopic spin Hamiltonians. Whether the nearest-neighbor exchange interaction J is ferromagnetic or antiferromagnetic, 1/T_1_ versus temperature T in ring nanomagnets may be peaked at around k_B_T=|J| provided the lifetime broadening of discrete energy levels is in proportion to T^3^. Experimental findings for ferromagnetic and antiferromagnetic Cu^II^ rings are reproduced with crucial contributions of magnetic anisotropies as well as acoustic phonons.
description: 5 pages with 5 figures embedded, to be published in J. Phys. Soc. Jpn. 75, No. 10 (2006)
Additional file 8: of Transcription profiling of butanol producer Clostridium beijerinckii NRRL B-598 using RNA-Seq
Creators: name: Sedlar, Karel
name: Koscova, Pavlina
name: Vasylkivska, Maryna
name: Branska, Barbora
name: Kolek, Jan
name: Kristyna Kupkova
name: Patakova, Petra
name: Provaznik, Ivo
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: COG functional categories of differential expressed genes. Barplots showing the number of COG categories associated with differentially expressed genes between adjacent time points. (PDF 226 kb)
Magnetic field amplification in supernova remnants
Creators: name: Xu, Siyao
name: Lazarian, Alex
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Based on the new findings on the turbulent dynamo in \citet{XL16}, we examine the magnetic field amplification in the context of supernova remnants. Due to the strong ion-neutral collisional damping in the weakly-ionized interstellar medium, the dynamo in the preshock turbulence remains in the damping kinematic regime, which leads to {\it a linear-in-time growth of the magnetic field strength}. The resultant magnetic field structure enables effective diffusion upstream and shock acceleration of cosmic rays to energies above the "knee". Differently, the nonlinear dynamo in the postshock turbulence leads to {\it a linear-in-time growth of the magnetic energy} due to the turbulent magnetic diffusion. Given a weak initial field strength in the postshock region, the magnetic field saturates at a significant distance from the shock front as a result of the inefficiency of the nonlinear dynamo. This result is in a good agreement with existing numerical simulations and well explains the X-ray spots detected far behind the shock front.
description: 8 pages, 2 figures, accepted for publication in ApJ
title: 01_1627
Creators: name: Wesley Baldwin, John
name: Baldwin, John W.
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2018
Subjects: subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: L'ensemble de ces notes ont été crée par John Baldwin lors d'une de ses premières périodes de résidence à Paris. Ces documents comprennent tous les magistri qu’il avait pu rencontrer dans ses sources. Aux XIIème et XIIIème siècles, les universités n'existant pas encore, le titre de magister s'il évoque certainement une compétence n'est pas rattaché de façon systématique au passage par les écoles. De surcroît, les magistris sont le plus souvent désignés par leur seul prénom. La lecture de ces données est donc difficile et suppose un long travail pour tenter d'identifier un individu auquel on pourrait rattacher plusieurs mentions. John Baldwin avait donc renoncé à utiliser ces données pour donner un prolongement à sa magnifique étude sur les gradués d'université et leur emploi par les Capétiens et les Plantagenêts. Néanmoins, il a conservé ces données et elles sont potentiellement très utile dans le cadre de Studium, comme le sont toutes les mentions dans les volumes des Fasti Ecclesiae Gallicanae de chanoines portant ce titre de magister sans autres précisions. L'ampleur des dépouillements rend ces données très utiles et nous devons une grande reconnaissance à John Baldwin pour avoir pris la peine de faire photocopier ses fiches et de nous les avoir transmises amicalement.
Les données ainsi que les images des fiches sont accessibles sur le site Internet à l'adresse suivante : http://studium-baldwin.lamop.fr/.
Les transcriptions des fiches ont été effectuées par des étudiants de Paris 1 Panthéon - Sorbonne mais elles n'ont pas été corrigées par la suite.
description: Relation: https://lamop.hypotheses.org/
Additional file 1 of Invasive pneumococcal disease in persons with predisposing factors is dominated by non-vaccine serotypes in Southwest Sweden
Creators: name: Bergman, Karin
name: Härnqvist, Tor
name: Backhaus, Erik
name: Trollfors, Birger
name: Dahl, Mats S.
name: Kolberg, Helena
name: Ockborn, Gunilla
name: Andersson, Rune
name: Karlsson, Johanna
name: Mellgren, Åsa
name: Skovbjerg, Susann
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Table S1. Univarible and multiviariable odds ratios (OR) with 95 % confidence intervals (CI) for invasive pneumococcal disease with specific serotypes. Table S2. Table S3 Table S4.
Blank field submm sources, failed stars, and the dark matter
Creators: name: Lawrence, A.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: I discuss the possibility that a significant fraction (possibly a third) of the faint SCUBA sources are not in fact high redshift galaxies, but actually local cold dark dusty gas clouds emitting only in the submm, with a temperature around 7K. I show that the observational constraints on such a population - dynamical limits on missing matter, the FIR-mm background, and the absence of gross high-latitude extinction features - constrains the mass of such objects to be in the range 0.1 - 10 Jupiter masses. The characteristics deduced are closely similar to those of the objects proposed by Walker and Wardle (1998) to explain halo dark matter. However, such objects, if they explain a large fraction of the SCUBA sources, cannot extend through the halo without greatly exceeding the FIR-mm background. Instead, I deduce the characteristic distance of the SCUBA sources to be around 100 pc, consistent with being drawn from a disk population with a scale height of few hundred parsecs. Regardless of the dark matter problem, the possible existence of such compact sub-stellar but non-degenerate objects is intriguing. They may be seen as "failed stars", representing an alternative end-point to brown dwarfs. It is possible that they greatly outnumber both stars and brown dwarfs. The nearest such object could be a fraction of a parsec away. Several relatively simple observations could critically test this hypothesis.
description: 25 pages, 1 figure, to be published in Monthly Notices of the RAS
A Universal Transition in Atmospheric Diffusion for Hot Subdwarfs Near 18,000 K
Creators: name: Brown, T. M.
name: Taylor, J. M.
name: Cassisi, S.
name: Sweigart, A. V.
name: Bellini, A.
name: Bedin, L. R.
name: Salaris, M.
name: Renzini, A.
name: Dalessandro, E.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: In the color-magnitude diagrams (CMDs) of globular clusters, when the locus of stars on the horizontal branch (HB) extends to hot temperatures, discontinuities are observed at colors corresponding to ~12,000 K and ~18,000 K. The former is the "Grundahl jump" that is associated with the onset of radiative levitation in the atmospheres of hot subdwarfs. The latter is the "Momany jump" that has remained unexplained. Using the Space Telescope Imaging Spectrograph on the Hubble Space Telescope, we have obtained ultraviolet and blue spectroscopy of six hot subdwarfs straddling the Momany jump in the massive globular cluster omega Cen. By comparison to model atmospheres and synthetic spectra, we find that the feature is due primarily to a decrease in atmospheric Fe for stars hotter than the feature, amplified by the temperature dependence of the Fe absorption at these effective temperatures.
description: Accepted for publication in The Astrophysical Journal. 9 pages, 1 table, 10 figures. Figure 2 is shown at low resolution due to file size limits
Competition between Electromagnetically Induced Transparency and Raman Processes
Creators: name: Agarwal, G. S.
name: Dey, T. N.
name: Gauthier, Daniel J.
Publisher: name: arXiv
Year: 2006
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We present a theoretical formulation of competition among electromagnetically induced transparency (EIT) and Raman processes. The latter become important when the medium can no longer be considered to be dilute. Unlike the standard formulation of EIT, we consider all fields applied and generated as interacting with both the transitions of the $Λ$ scheme. We solve Maxwell equations for the net generated field using a fast-Fourier-transform technique and obtain predictions for the probe, control and Raman fields. We show how the intensity of the probe field is depleted at higher atomic number densities due to the build up of multiple Raman fields.
description: 3.5 pages, 7 figures
Supplementary Material for the Paper "Detecting Developers' Task Switches and Types"
Creators: name: Meyer, André N
name: Satterfield, Chris
name: Züger, Manuela
name: Kevic, Katja
name: Murphy, Gail C
name: Zimmermann, Thomas
name: Fritz, Thomas
Publisher: name: Zenodo
Year: 2019

description: Contains the supplementary material for the paper "Detecting Developers' Task Switches and Types". All contents are explained in the file README.txt. Abstract: Developers' work on a broad variety of tasks during their days and constantly switch between tasks. While these task switches can be beneficial, they can also incur a high cognitive burden on developers, since they have to continuously remember and rebuild task context - the artifacts and applications relevant to the task. Researchers have therefore proposed to capture task context more explicitly and use this to provide better task support, such as task switch reduction or resumption support. Yet, these approaches generally require the developer to manually identify task switches. Automatic approaches for predicting task switches have so far been limited in their accuracy, scope and the time discrepancy between predicted and actual task switches.
 In our work, we examine the use of automatically collected computer interaction data for detecting developers' task switches as well as task types. In two field studies--a 4h observational study and a multi-day study with experience sampling--we collected data from a total of 25 professional developers. Our study results show that we are able to use temporal and semantic features from developers' computer interaction data to detect task switches and types in the field with high accuracy of 84% and 61% respectively, and within a short time window of less than 1.6 minutes on average from the actual task switch. We discuss our findings and their practical value for a wide range of applications in real work settings. Source Code:  Monitoring tool: https://github.com/sealuzh/PersonalAnalytics Observation tool: https://github.com/casaout/ObservationStudyTool
Additional file 12: of Diversity and signature of small RNA in different bodily fluids using next generation sequencing
Creators: name: El-Mogy, Mohamed
name: Lam, Bernard
name: Haj-Ahmad, Taha
name: McGowan, Shannon
name: Yu, Darrick
name: Nosal, Lucas
name: Nezar Rghei
name: Roberts, Pam
name: Haj-Ahmad, Yousef
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Developmental Biology
subject: Computational Biology

description: Profiles of the top 50 mature tDR in each fluid. (PDF 4737Â kb)
Additional file 7: of Transcription profiling of butanol producer Clostridium beijerinckii NRRL B-598 using RNA-Seq
Creators: name: Sedlar, Karel
name: Koscova, Pavlina
name: Vasylkivska, Maryna
name: Branska, Barbora
name: Kolek, Jan
name: Kristyna Kupkova
name: Patakova, Petra
name: Provaznik, Ivo
Publisher: name: figshare
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology

description: Dotplot of C. beijerinckii NRRL B-598 and C. beijerinckii NCIMB 8052 genome. Dotplots showing that no major rearrangement between the two strains are present. (PDF 315 kb)
On a coalescence process and its branching genealogy
Creators: name: Grosjean, Nicolas
name: Huillet, Thierry
Publisher: name: arXiv
Year: 2017
Subjects: subject: Probability (math.PR)
subject: Populations and Evolution (q-bio.PE)
subject: FOS: Mathematics
subject: FOS: Biological sciences

description: We define and analyze a coalescent process as a recursive box-filling process whose genealogy is given by an ancestral time-reversed, time-inhomogeneous Bienyamé-Galton-Watson process. Special interest is on the expected size of a typical box and its probability of being empty. Special cases leading to exact asymptotic computations are investigated when the coalescing mechanisms are either linear-fractional or quadratic.
description: 10 pages, one figure
title: Implementation of an integrated management strategy to deal with landslide triggered debris flows: the Valloire case study (Savoie, France)
Creators: name: Laigle, Dominique
name: Jongmans, Denis
name: Liebault, Frédéric
name: Baillet, Laurent
name: Rey, Etienne
name: Fontaine, Firmin
name: Borgniet, Laurent
name: Bonnefoy-Demongeot, Mylène
name: Ousset, Frédéric
Publisher: name: Mountain Scholar
Year: 2019
Subjects: debris flow
landslide
monitoring
hazard assessment
risk protection

description: The Rieu Benoît is a debris-flow-prone catchment located in Valloire (Savoie, France). In 2011, a lateral landslide was detected about 600 m upstream of the fan apex where houses are present. This landslide has evolved slowly since 2011 but is likely, in case of rapid collapse, to provide up to 150,000 to 200,000 m3 of material to the channel and generate intense debris flows thus threatening human settlements on the fan and in the Valloire ski resort. This paper presents a contribution to the definition of a protection strategy based on the principle that a catastrophic evolution of the landslide can be detected sufficiently in advance to set up an effective alert procedure. Such early warning system can be designed provided (i) the landslide is instrumented to properly detect its evolution and characterize the volumes likely to mobilize into debris flows, this is carried out using photogrammetric, seismic, and electrical techniques; (ii) the interaction between the landslide and the channel is observed and sufficiently understood, this is carried out using a time-lapse camera taking a picture every two hours and at higher frequency once a flow is detected by a geophone; (iii) subsequent debris flows are observed and characterized in terms of flow thickness and velocity, this is carried out at a monitoring station located at the fan apex and equipped with a radar flow stage sensor and three geophones; (iv) consequences on urbanized areas are evaluated a priori on the basis of scenarios, this is carried out by simulating the spreading of debris flows for different volumes and material properties. The final step consists in building alert and evacuation procedures in collaboration with local authorities.
Community Seed Fair Report - Jharkhand ( India)
Creators: name: Arora, Vikas
Publisher: name: ITPGRFA
Year: 2024
Subjects: subject: Agriculture
subject: Natural resources management
subject: Nutrition
subject: Tribal
subject: Jharkhand
subject: Traditional varieties
subject: Under-utilized sppecies
subject: Pulses
subject: Farmers
subject: Resilience
subject: PR-294
subject: IND
subject: Seed fairs
subject: On-farm conservation
subject: Plant genetic resources
subject: Women
subject: Climate change

description: This report summarizes the rational and main outcomes of the community seed fairs organized in Chhattisgarh (India) as part of the implementation of the project “Improving pulse biodiversity in rice fallow areas of tribal belts of Central and East Indian states to bring resilience in the farming practice, provide livelihood support and enhance nutritional level of the tribal population” funded by the Benefit Sharing Fund (BSF) of the International Treaty of Plant Genetic Resources for Food and Agriculture (ITPGRFA) of the Food and Agriculture Organisation (FAO) of the United Nations (UN).

This innovative project is implemented by PAIRVI, New Delhi in five states including Chhattisgarh. The aim of the project is to enhance the availability and on farm conservation of resilient varieties of pulses (traditional varieties, varieties procured from gene banks as well as under-utilised species of pulses) and oil seeds for cultivation during the rice fallow season. The project decided to conduct community seeds fair on 27th December 2020 at its project location, Bahiroki, Deoghar district under Jharkhand.
Transverse instabilities of stripe domains in magnetic thin films with perpendicular magnetic anisotropy
Creators: name: Ruth, Max E.
name: Iacocca, Ezio
name: Kevrekidis, Panayotis G.
name: Hoefer, Mark A.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Stripe domains are narrow, elongated, reversed regions that exist in magnetic materials with perpendicular magnetic anisotropy. Stripe domains appear as a pair of domain walls that can exhibit topology with a nonzero chirality. Recent experimental and numerical investigations identify an instability of stripe domains in the long direction as a means of nucleating isolated magnetic skyrmions. Here, the onset and nonlinear evolution of transverse instabilities for a dynamic stripe domain known as the bion stripe are investigated. Both non-topological and topological variants of the bion stripe are shown to exhibit a long-wavelength transverse instability with different characteristic features. In the former, small transverse variations in the stripe's width lead to a neck instability that eventually pinches the non-topological stripe into a chain of two-dimensional breathers composed of droplet soliton pairs. In the latter case, small variations in the stripe's center results in a snake instability whose topological structure leads to the nucleation of dynamic magnetic skyrmions and antiskyrmions as well as perimeter-modulated droplets. Quantitative, analytical predictions for both the early, linear evolution and the long-time, nonlinear evolution are achieved using an averaged Lagrangian approach that incorporates both exchange (dispersion) and anisotropy (nonlinearity). The method of analysis is general and can be applied to other filamentary structures.
description: 8 figures, 13 pages
Formation of Double Neutron Stars, Millisecond Pulsars and Double Black Holes
Creators: name: Heuvel, Edward P. J. van den
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: The 1982 model for the formation of the Hulse-Taylor binary radio pulsar PSR B1913+16 is described, which since has become the standard model for the formation of double neutron stars, confirmed by the 2003 discovery of the double pulsar system PSR J0737-3039AB. A brief overview is given of the present status of our knowledge of the double neutron stars, of which 15 systems are presently known. The binary-recycling model for the formation of millisecond pulsars is described, as put forward independently by Alpar et al. (1982), Radhakrishnan and Srinivasan (1982) and Fabian et al. (1983). This now is the standard model for the formation of these objects, confirmed by the discovery in 1998 of the accreting millisecond X-ray pulsars. It is noticed that the formation process of close double black holes has analogies to that of close double neutron stars, extended to binaries of larger iinitial component masses, although there are also considerable differences in the physics of the binary evolution at these larger masses.
description: Has appeared in Journal of Astrophysics and Astronomy special issue on 'Physics of Neutron Stars and Related Objects', celebrating the 75th birth year of G. Srinivasan
Distance to the RR Lyrae Star V716 Monocerotis
Creators: name: Hoard, D. W.
name: Layden, Andrew C.
name: Buss, Jeremy
name: Demarco, Ricardo
name: Greene, Jenny
name: Kim-Quijano, Jessica
name: Soderberg, Alicia M.
Publisher: name: arXiv
Year: 2000
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We present high quality BVRI CCD photometry of the variable star V716 Monocerotis (= NSV 03775). We confirm it to be an RR Lyrae star of variability type ab (i.e. a fundamental mode pulsator), and determine its metallicity ([Fe/H] = -1.33 +/- 0.25), luminosity (Mv = 0.80 +/- 0.06), and foreground reddening (E(B-V) = 0.05-0.17) from the Fourier components of its light curve. These parameters indicate a distance of 4.1 +/- 0.3 kpc, placing V716 Mon near the plane of the Galaxy well outside the solar circle. This research was conducted as part of the 1999 Research Experiences for Undergraduates (REU) and Practicas de Investigacion en Astronomia (PIA) Programs at Cerro Tololo Inter-American Observatory (CTIO).
description: 9 pages including 2 figures and 2 tables; accepted by PASP
MOESM1 of An innovative diagnostic technology for the codon mutation C580Y in kelch13 of Plasmodium falciparum with MinION nanopore sequencer
Creators: name: Imai, Kazuo
name: Tarumoto, Norihito
name: Runtuwene, Lucky
name: Sakai, Jun
name: Hayashida, Kyoko
name: Eshita, Yuki
name: Ryuichiro Maeda
name: Tuda, Josef
name: Ohno, Hideaki
name: Murakami, Takashi
name: Shigefumi Maesaki
name: Suzuki, Yutaka
name: Yamagishi, Junya
name: Maeda, Takuya
Publisher: name: figshare
Year: 2018
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Fig. S1. Sequence alignment of the kelch-propeller domain of human Plasmodium parasites and the primer locations for LAMP. Pf, P. falciparum; Pv, P. vivax; Poc, P. ovale curtisi; Pow, P. ovale wallikeri; Pm, P. malariae; Pk, P. knowlesi.
Metastability in Markov processes
Creators: name: Larralde, Hernan
name: Leyvraz, Francois
name: Sanders, David P.
Publisher: name: arXiv
Year: 2006
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: We present a formalism to describe slowly decaying systems in the context of finite Markov chains obeying detailed balance. We show that phase space can be partitioned into approximately decoupled regions, in which one may introduce restricted Markov chains which are close to the original process but do not leave these regions. Within this context, we identify the conditions under which the decaying system can be considered to be in a metastable state. Furthermore, we show that such metastable states can be described in thermodynamic terms and define their free energy. This is accomplished showing that the probability distribution describing the metastable state is indeed proportional to the equilibrium distribution, as is commonly assumed. We test the formalism numerically in the case of the two-dimensional kinetic Ising model, using the Wang--Landau algorithm to show this proportionality explicitly, and confirm that the proportionality constant is as derived in the theory. Finally, we extend the formalism to situations in which a system can have several metastable states.
description: 30 pages, 5 figures; version with one higher quality figure available at http://www.fis.unam.mx/~dsanders/
IMPORTANT ASPECTS OF THE ADOPTION OF THE ANNUAL SOCIO-ECONOMIC DEVELOPMENT PROGRAM AND LOCAL BUDGET PARAMETERS
Creators: name: Sarvar Maxmudov
Publisher: name: Zenodo
Year: 2024

description: The adoption of the annual socio-economic development program and local budget parameters plays a crucial role in ensuring the sustainable and long-term development of a region. This process involves the development of various strategies aimed at advancing the local economy, improving social infrastructure, and enhancing the well-being of the population. These strategies are aligned with the approved budget parameters. The process is a key factor in enabling local authorities to make informed decisions regarding economic stability and the creation of new job opportunities.
Additional file 2 of Integration of global metabolomics and lipidomics approaches reveals the molecular mechanisms and the potential biomarkers for postoperative recurrence in early-stage cholangiocarcinoma
Creators: name: Padthaisong, Sureerat
name: Phetcharaburanin, Jutarop
name: Klanrit, Poramate
name: Li, Jia V.
name: Namwat, Nisana
name: Khuntikeo, Narong
name: Titapun, Attapol
name: Jarearnrat, Apiwat
name: Wangwiwatsin, Arporn
name: Mahalapbutr, Panupong
name: Loilome, Watcharin
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Inorganic Chemistry

description: Additional file 2: Table S1. Patient characteristics on 1H-NMR analysis. Table S2. Patient characteristics on UPLC-MS analysis. Table S3. Total metabolites were identified in serum using 1H-NMR. Table S4. The differential lipid species of patients with and without recurrence. Table S5. The correlation of protein involved in lipid metabolism (CD36, ACLY, SCD1) and CSC markers (CD44, CD44v6, CD44v8-10, EpCAM)
“CARBGAME” (CARd & Board GAmes in Medical Education) - Clinical Enzymology
Creators: name: Surapaneni, Krishna Mohan
Publisher: name: figshare
Year: 2024
Subjects: classificationCode: 320599
subject: Medical biochemistry and metabolomics not elsewhere classified

description: "CARBGAME" (CARd & Board GAmes in Medical Education) offers a unique and enjoyable learning experience where students explore intricate yet crucial medical topics through gamification using cards and boards. This innovative approach merges fun with learning, providing a customizable platform rooted in fundamental educational principles. The goal is to foster engaging and meaningful learning experiences, giving students an effective and enjoyable method for mastering complex medical subjects.This 10x10 game board is designed for the chapter “Clinical Enzymology” in Biochemistry for 1st Professional MBBS Students. Each square encapsulates a question or card related to various aspects of clinical enzymology, including enzyme classification, mechanisms of action, clinical significance, diagnostic uses, and disease associations. The cards within "CARBGAME" present scenarios, clinical cases, or interactive challenges that require players to apply their knowledge of clinical enzymology strategically. This approach not only reinforces theoretical concepts but also encourages practical application and critical thinking skills, mirroring real-world scenarios.Customization features allow educators to tailor the game to different topics and subjects, facilitating an integrated learning experience that makes learning medical concepts accessible, enjoyable, and memorable. This gamified platform helps students master the complexities of clinical enzymology through an engaging and effective educational method.