cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Alterations in Structural Correlation Networks with Prior Concussion in Collision-Sport Athletes
Creators: name: Sadiq, Muhammad Usman
name: Svaldi, Diana
name: Shenk, Trey
name: Breedlove, Evan
name: Poole, Victoria
name: Tamer, Greg
name: Abbas, Kausar
name: Talavage, Thomas
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantitative Methods (q-bio.QM)
subject: Neural and Evolutionary Computing (cs.NE)
subject: Neurons and Cognition (q-bio.NC)
subject: FOS: Biological sciences
subject: FOS: Computer and information sciences

description: Several studies have used structural correlation networks, derived from anatomical covariance of brain regions, to analyze neurologic changes associated with multiple sclerosis, schizophrenia and breast cancer [1][2]. Graph-theoretical analyses of human brain structural networks have consistently shown the characteristic of small-worldness that reflects a network with both high segregation and high integration. A large neuroimaging literature on football players, with and without history of concussion, has shown both functional and anatomical changes. Here we use graph-based topological properties of anatomical correlation networks to study the effect of prior concussion in collision-sport athletes. 40 high school collision-sport athletes (23 male football, 17 female soccer; CSA) without self-reported history of concussion (HOC-), 18 athletes (13 male football, 5 female soccer) with self-reported history of concussion (HOC+) and 24 healthy controls (19 male, 5 female; CN) participated in imaging sessions before the beginning of a competition season. The extracted residual volumes for each group were used for building the correlation networks and their small-worldness, , is calculated. The small-worldness of CSA without prior history of concussion, , is significantly greater than that of controls, . CSA with prior history have significantly higher (vs. 95% confidence interval) small-worldness compared to HOC+, over a range of network densities. The longer path lengths in HOC+ group could indicate disrupted neuronal integration relative to healthy controls.
Impacts of the Desiccation of the Aral Sea on the Central Asian Dust Life‐Cycle
Creators: name: Banks, Jamie R.
name: Heinold, Bernd
name: Schepanski, Kerstin
Publisher: name: Freie Universität Berlin
Year: 2022
Subjects: subject: dust aerosol
subject: Aralkum
subject: Central Asia
subject: modeling
subject: 500 Naturwissenschaften und Mathematik::550 Geowissenschaften, Geologie::550 Geowissenschaften

description: The formation of the Aralkum (Aral Desert), following the severe desiccation of the former Aral Sea since the 1960s, has created what may be regarded as one of the world's most significant anthropogenic dust sources. In this paper, focusing on dust emission and transport patterns from the Aralkum, the dust life‐cycle has been simulated over Central Asia using the aerosol transport model COSMO‐MUSCAT (COnsortium for Small‐scale MOdelling‐MUltiScale Chemistry Aerosol Transport Model), making use of the Global Surface Water data set to take into account the sensitivity to changes in surface water coverage over the region between the 1980s (the “past”) and the 2010s (the “present”). Over a case study 1‐year period, the simulated dust emissions from the Aralkum region increased from 14.3 to 27.1 Tg year−1 between the past and present, an increase driven solely by the changes in the surface water environment. Of these simulated modern emissions, 14.5 Tg are driven by westerly winds, indicating that regions downwind to the east may be worst affected by Aralkum dust. However a high degree of interannual variability in the prevailing surface wind patterns ensures that these transport patterns of Aralkum dust do not occur every year. Frequent cloud cover poses substantial challenges for observations of Central Asian dust: in the Aralkum, over two‐thirds of the yearly emissions are emitted under overcast skies, dust which may be impossible to observe using traditional satellite or ground‐based passive remote sensing techniques. Furthermore, it is apparent that the pattern of dust transport from the Aralkum under clear‐sky conditions is not representative of the pattern under all‐sky conditions.
Additional file 6: of Sodium channels enable fast electrical signaling and regulate phagocytosis in the retinal pigment epithelium
Creators: name: Johansson, Julia
name: Karema-Jokinen, Viivi
name: Hakanen, Satu
name: JylhĂ¤, Antti
name: Uusitalo, Hannu
name: Vihinen-Ranta, Maija
name: Skottman, Heli
name: Ihalainen, Teemu
name: Nymark, Soile
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Computational Biology

description: Table S1. List of chemical and antibody details. (DOCX 46 kb)
Atractides (Atractides) latipes
Creators: name: Smit, H.
name: Gerecke, R.
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Hygrobatidae
Atractides
Atractides latipes

description: Atractides (Atractides) latipes (Szalay, 1935)
 Atractides latipes (Szalay, 1935): E. Angelier 1953b: 57, 1959: 16, 1959a: 66, 1959c: 164; Santucci 1971: 83.
 Megapus remyi E. Angelier 1951b: 509.
 New record. Gard: 0/1/0, l’HØrault 3 km upstream of Valleraugue, 44°05.190 N 3°36.475 E, alt. 405 m a.s.l., 15 May 2005, leg. H. Smit.
Distribution in France: Corsica, Gard.
description: Published as part of Smit, H. & Gerecke, R., 2010, A CHECKLIST OF THE WATER MITES OF FRANCE (ACARI: HYDRACHNIDIA) Harry S and Reinhard G, pp. 21-91 in Acarologia 50 (1) on page 53, DOI: 10.1051/acarologia/20101952, http://zenodo.org/record/5392293
A MONOTYPIC STAND OF NEOCALAMITES IRANENSIS N. SP. FROM THE CARNIAN PLUVIAL EPISODE (LATE TRIASSIC) OF THE AGHDARBAND AREA, NE IRAN (TURAN PLATE)
Creators: name: MAZAHERI-JOHARI, MINA
name: KUSTATSCHER, EVELYN
name: ROGHI, GUIDO
name: GHASEMI-NEJAD, EBRAHIM
name: GIANOLLA, PIERO
Publisher: name: RIVISTA ITALIANA DI PALEONTOLOGIA E STRATIGRAFIA
Year: 2021

description: The Aghdarband Basin in the Kopeh-Dagh Range (NE Iran) is one of the most important areas for unraveling the evolution of the Turan plate (southern margin of Eurasia) during the last phase of the closure of the Paleotethys and to reconstruct the history of the Cimmerian blocks just before their collision with Eurasia during the early Late Triassic. The youngest sediments affected by the Early Cimmerian orogeny are those of the Upper Triassic Miankuhi Formation, which covers unconformably the Upper Triassic (lower Carnian) marine beds of the Sina Formation by an interval of continental facies including local conglomerates, cross-bedded sandstones, mudstone layers, silty shales, an up to one-meter thick coal layer with plant remains, and shales. The plant assemblages represent a relatively wide variety of different forms (sphenophytes, ginkgophytes, conifers, and incertis sedis), documenting wetlands with lush vegetation typical of warm and humid environments. In this study, we describe a plant fossil assemblage from the base of the Miankuhi Fm., dominated by roots and vegetative organs of Neocalamites iranensis n. sp., with few plant fossils of uncertain botanical affinity. Palynological investigations of the basal part of the Miankuhi Formation confirm a latest early Carnian to late Carnian age for this interval and reveal, for the first time, a clear link between this plant-bearing bed, and a time of global environmental changes, the Carnian Pluvial Episode. This is the first report of the Carnian Pluvial Episode in the Turan plate (southern margin of Eurasia) and Iran.
description: RIVISTA ITALIANA DI PALEONTOLOGIA E STRATIGRAFIA , V. 127 N. 2 (2021)
A Bayesian direct method implementation to fit emission line spectra: Application to the primordial He abundance determination
Creators: name: Fernández, Vital
name: Terlevich, Elena
name: Díaz, Angeles I.
name: Terlevich, Roberto
Publisher: name: arXiv
Year: 2019
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: This work presents a Bayesian algorithm to fit the recombination and collisionally excited line spectra of gas photoionized by clusters of young stars. The current model consists in fourteen dimensions: two electron temperatures, one electron density, the extinction coefficient, the optical depth on the $HeI$ recombination lines and nine ionic species. The results are in very good agreement with those previously published using the traditional methodology. The probabilistic programming library PyMC3 was chosen to explore the parameter space via a NUTs sampler. These machine learning tools provided excellent convergence quality and speed. The primordial helium abundance measured from a multivariable regression using oxygen, nitrogen and sulfur was $Y_{P,\,O-N-S}=0.243\pm0.005$ in agreement with a standard Big Bang scenario.
description: 18 pages, 9 figures and 12 tables, accepted for publication in MNRAS; added accepted submission
Random complex zeroes, I. Asymptotic normality
Creators: name: Sodin, Mikhail
name: Tsirelson, Boris
Publisher: name: arXiv
Year: 2002
Subjects: subject: Complex Variables (math.CV)
subject: Mathematical Physics (math-ph)
subject: Probability (math.PR)
subject: FOS: Mathematics
subject: FOS: Physical sciences
subject: 30B20; 30C15, 60G60, 82B10

description: We consider three models (elliptic, flat and hyperbolic) of Gaussian random analytic functions distinguished by invariance of their zeroes distribution. Asymptotic normality is proven for smooth functionals (linear statistics) of the set of zeroes.
description: 26 pages. Version 2 (final): the end of the proof corrected (sections 3.2, 3.3); small insertions to Introduction and References
Additional file 4: of Geographical analysis of evaluated chronic disease programs for Aboriginal and Torres Strait Islander people in the Australian primary health care setting: a systematic scoping review
Creators: name: Beks, Hannah
name: Binder, Marley
name: Kourbelis, Constance
name: Ewing, Geraldine
name: Charles, James
name: Paradies, Yin
name: Clark, Robyn
name: Versace, Vincent
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Molecular Biology
subject: Pharmacology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Data extraction: evidence of partnerships and reference to ethical guidelines. This file contains a table of data extracted in relation to the secondary objectives of this review; scoping evidence of partnerships with Indigenous organizations and ethical approaches to undertaking a program evaluation. (DOCX 95 kb)
Atractides (Atractides) lunipes Lundblad 1956
Creators: name: Smit, H.
name: Gerecke, R.
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Hygrobatidae
Atractides
Atractides lunipes

description: Atractides (Atractides) lunipes Lundblad, 1956
 Atractides lunipes Lundblad, 1956: 211; M.-L. Angelier 1980: 14; E. Angelier et al. 1985: 31.
 New records. ArdŁche: 2/1/0, La Drobie RiviŁre, NW of Ribes, 44°32.256 N 4°3.364 E, 1 May 2003, leg. H. Smit; 1/2/0, l’ArdŁche RiviŁre at Balazuc, 44°30.692 N 4°22.869 E, 29 April 2003, leg. H. Smit.
Distribution in France: ArdŁche, PyrØnØes (PyrØnØes-Orientales, Hautes-PyrØnØes).
description: Published as part of Smit, H. & Gerecke, R., 2010, A CHECKLIST OF THE WATER MITES OF FRANCE (ACARI: HYDRACHNIDIA) Harry S and Reinhard G, pp. 21-91 in Acarologia 50 (1) on page 54, DOI: 10.1051/acarologia/20101952, http://zenodo.org/record/5392293
Sunha bicolor Delucchi 1962
Creators: name: Baur, Hannes
Publisher: name: Zenodo
Year: 2001
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Eulophidae
Sunha
Sunha bicolor

description: Sunha bicolor Delucchi (Pteromalidae)
 Sunha bicolor Delucchi, 1962c: 54. Holotype m, Morocco: Rabat, surroundings (VD [examined]).
 Material. HOLOTYPE m (mp, metasoma lacking, head glued to card rectangle) labelled`RABAT (MA) 4-9-61; HOLOTYPE [red]; Sunha bicolor n. V. Delucchi det.’.
PARATYPES, VD: 4 mm, 1, l allotype l(mp). Two slides (sc) with antennae (1962c: 55, ®gures 3, 4) of female paratypes and allotype.
 Status. Notanisomorphell a bicolor (Delucchi) comb. n.
description: Published as part of Baur, Hannes, 2001, The Hymenoptera (Chalcidoidea, Ichneumonoidea, Platygastroidea) described by Vittorio Delucchi: an annotated catalogue, pp. 55-125 in Journal of Natural History 35 (1) on page 111, DOI: 10.1080/002229301447899, http://zenodo.org/record/5275865
Individual skyrmion manipulation by local magnetic field gradients
Creators: name: Casiraghi, Arianna
name: Corte-León, Héctor
name: Vafaee, Mehran
name: Garcia-Sanchez, Felipe
name: Durin, Gianfranco
name: Pasquale, Massimo
name: Jakob, Gerhard
name: Kläui, Mathias
name: Kazakova, Olga
Publisher: name: arXiv
Year: 2019
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Magnetic skyrmions are topologically protected spin textures, stabilised in systems with strong Dzyaloshinskii-Moriya interaction (DMI). Several studies have shown that electrical currents can move skyrmions efficiently through spin-orbit torques. While promising for technological applications, current-driven skyrmion motion is intrinsically collective and accompanied by undesired heating effects. Here we demonstrate a new approach to control individual skyrmion positions precisely, which relies on the magnetic interaction between sample and a magnetic force microscopy (MFM) probe. We investigate perpendicularly magnetised X/CoFeB/MgO multilayers, where for X = W or Pt the DMI is sufficiently strong to allow for skyrmion nucleation in an applied field. We show that these skyrmions can be manipulated individually through the local field gradient generated by the scanning MFM probe with an unprecedented level of accuracy. Furthermore, we show that the probe stray field can assist skyrmion nucleation. Our proof-of-concepts results offer current-free paradigms to efficient individual skyrmion control.
The metabolic differences of anestrus, heat, pregnancy, pseudopregnancy, and lactation in 800 female dogs
Creators: name: Ottka, Claudia
name: Vapalahti, Katariina
name: Arlt, Sebastian Patrick
name: Bartel, Alexander
name: Lohi, Hannes
Publisher: name: Freie Universität Berlin
Year: 2023
Subjects: subject: dog
subject: metabolomics
subject: metabolism
subject: pregnancy
subject: lactation
subject: reproduction
subject: 600 Technik, Medizin, angewandte Wissenschaften::630 Landwirtschaft::630 Landwirtschaft und verwandte Bereiche

description: Introduction: Reproduction causes major hormonal and physiological changes to the female body. However, the metabolic changes occurring during canine reproduction are scarcely studied. Methods: In this cross-sectional study, we assessed the metabolic effects of canine reproductive status using a 1H NMR metabolomics platform optimized and validated for canine use. The study population consisted of a total of 837 healthy, intact female dogs in breeding age, of which 663 dogs were in anestrus, 78 in heat, 43 were pseudopregnant, 15 were pregnant, and 38 were lactating. The differences in metabolite profiles between these states were studied by the Kruskal-Wallis test with post-hoc tests performed using the Dunn's test, and visualized by box plots and a heatmap. The ability of the metabolite profile to differentiate pregnant dogs from non-pregnant ones was assessed by creating a multivariate Firth logistic regression model using forward stepwise selection. Results: Lactation, pregnancy and heat all were associated with distinct metabolic changes; pregnancy caused major changes in the concentrations of glycoprotein acetyls, albumin and creatinine, and smaller changes in several lipids, citrate, glutamine, and alanine. Pseudopregnancy, on the other hand, metabolically largely resembled anestrus. Lactation caused major changes in amino acid concentrations and smaller changes in several lipids, albumin, citrate, creatinine, and glycoprotein acetyls. Heat, referring to proestrus and estrus, affected cholesterol and LDL metabolism, and increased HDL particle size. Albumin and glycoprotein acetyls were the metabolites included in the final multivariate model for pregnancy detection, and could differentiate pregnant dogs from non-pregnant ones with excellent sensitivity and specificity. Discussion: These results increase our understanding of the metabolic consequences of canine reproduction, with the possibility of improving maternal health and ensuring reproductive success. The identified metabolites could be used for confirming canine pregnancy.
Additional file 1: of Characterization and expression profiles of miRNAs in the triploid hybrids of Brassica napus and Brassica rapa
Creators: name: Libin Zhang
name: Zou, Jun
name: Shisheng Li
name: Baoshan Wang
name: Raboanatahiry, Nadia
name: Maoteng Li
Publisher: name: figshare
Year: 2019
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Table S1. Primers for qRT-PCR validation of differentially expressed miRNAs between B. napus, B. rapa and the triploid hybrid. (DOCX 15 kb)
Sympiesis asecta Delucchi
Creators: name: Baur, Hannes
Publisher: name: Zenodo
Year: 2001
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Eulophidae
Sympiesis
Sympiesis asecta

description: Sympiesis asecta Delucchi (Eulophidae)
 Sympiesis (Moroceras) asecta Delucchi, 1962c: 59. Holotype, l Morocco: 15 km from Rabat, road to MekneÁs, Mamora forest (VD [examined]).
 Material. HOLOTYPE l(mp, left antenna lacking) labelled`ex L. messaniella Mamora, VI.60 V. Delucchi leg.; Sympiesis asecta n. V. Delucchi det.; HOLOTYPE [red]’. One slide (sc) labelled`48; Morocera [sic] sympiesiformis [sic] n. sp. antenna m l ’ with left antenna (1962c: 57, ®gure 9) of holotype and left antenna (1962c: 57, ®gure 8) of allotype.
PARATYPES, VD: 1 m (cp), allotype m (mp). One slide as above.
 Remarks. Though the label on the slide is rather confusing there is no doubt on the identity of the parts. These ®t perfectly the drawings in the original description and only the mentioned specimens lack these parts.
 BoucÏek (1974: 119) discussed the possibility that asecta is a junior synonym Sympiesis biroi (ErdoÈs).
 Status. Sympiesis asecta Delucchi.
description: Published as part of Baur, Hannes, 2001, The Hymenoptera (Chalcidoidea, Ichneumonoidea, Platygastroidea) described by Vittorio Delucchi: an annotated catalogue, pp. 55-125 in Journal of Natural History 35 (1) on page 111, DOI: 10.1080/002229301447899, http://zenodo.org/record/5275865
Additional file 3: of Geographical analysis of evaluated chronic disease programs for Aboriginal and Torres Strait Islander people in the Australian primary health care setting: a systematic scoping review
Creators: name: Beks, Hannah
name: Binder, Marley
name: Kourbelis, Constance
name: Ewing, Geraldine
name: Charles, James
name: Paradies, Yin
name: Clark, Robyn
name: Versace, Vincent
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Excluded Studies. This file contains a table of excluded studies and reasons for exclusion. (DOCX 68 kb)
Atractides (Atractides) robustus
Creators: name: Smit, H.
name: Gerecke, R.
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Hygrobatidae
Atractides
Atractides robustus

description: Atractides (Atractides) robustus (Sokolov, 1940)
 Atractides nodipalpis robustus (Sokolov, 1940): Lundblad 1956a: 2.
 New records. ArdŁche: 1/0/0, La Drobie RiviŁre, NW of Ribes, 44°32.256 N 4°3.364 E, 1 May 2003, leg. H. Smit. HØrault: 1/0/0, RiviŁre La Vis at GorniŁs, 43°53.591 N 3°37.200 E, alt. 708 m a.s.l., 23 July 2008, leg. H. Smit & P. Martin.
Distribution in France: ArdŁche, HØrault, IsŁre, PyrØnØes-Orientales.
description: Published as part of Smit, H. & Gerecke, R., 2010, A CHECKLIST OF THE WATER MITES OF FRANCE (ACARI: HYDRACHNIDIA) Harry S and Reinhard G, pp. 21-91 in Acarologia 50 (1) on page 55, DOI: 10.1051/acarologia/20101952, http://zenodo.org/record/5392293
Surface thermodynamics, surface stress, equations at surfaces and triple lines for deformable bodies
Creators: name: Olives, Juan
Publisher: name: arXiv
Year: 2019
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Other Condensed Matter (cond-mat.other)
subject: FOS: Physical sciences

description: The thermodynamics and mechanics of the surface of a deformable body are studied here, following and refining the general approach of Gibbs. It is first shown that the 'local' thermodynamic variables of the state of the surface are only the temperature, the chemical potentials and the surface strain tensor (true thermodynamic variables, for a viscoelastic solid or a viscous fluid). A new definition of the surface stress is given and the corresponding surface thermodynamics equations are presented. The mechanical equilibrium equation at the surface is then obtained. It involves the surface stress and is similar to the Cauchy equation for the volume. Its normal component is a generalization of the Laplace equation. At a (body-fluid-fluid) triple contact line, two equations are obtained, which represent: (i) the equilibrium of the forces (surface stresses) for a triple line fixed on the body; (ii) the equilibrium relative to the motion of the line with respect to the body. This last equation leads to a strong modification of Young's classical capillary equation.
Sequence polymorphisms in a Theileria annulata surface protein (TaSP) known to augment the immunity induced by live attenuated cell line vaccine
Creators: name: Elati, Khawla
name: Nijhof, Ard Menzo
name: Mwamuye, Micky M.
name: Ameen, Vahel J.
name: Mhadhbi, Moez
name: Darghouth, Mohamed Aziz
name: Obara, Isaiah
Publisher: name: Freie Universität Berlin
Year: 2022
Subjects: subject: subunit vaccine
subject: TaSP
subject: Theileria annulata
subject: 600 Technik, Medizin, angewandte Wissenschaften::630 Landwirtschaft::630 Landwirtschaft und verwandte Bereiche

description: Theileria annulata is a tick‐borne protozoan causing tropical theileriosis in cattle. The use of attenuated cell line vaccines in combination with subunit vaccines has been relatively successful as a control method, as exemplified by a recent study in which immunization with a local cell line followed by booster vaccinations with recombinant T. annulata surface protein (TaSP) resulted in 100% protection upon field challenge in Sudan. However, these findings cannot be directly extrapolated to other countries as culture‐attenuated live vaccines are generated using local strains and no systematic evaluation of genotype differences between countries has been undertaken. In this study, we sequenced the TaSP gene from T. annulata cell lines and field isolates from Tunisia (n = 28) and compared them to genotypes from Sudan (n = 25) and Morocco (n = 1; AJ316259.1). Our analyses revealed 20 unique TaSP genotypes in the Tunisian samples, which were all novel but similar to genotypes found in Asia. The impact of these polymorphisms on the ability of the TaSP antigen to boost the immunity engendered by live cell line vaccines, especially in Tunisia where studies with TaSP have not been conducted, remains to be examined. Interestingly, phylogenetic analyses of publicly available TaSP sequences resolved the sequences into two clusters with no correlation to the geographical origin of the isolates. The availability of candidate vaccines that were recently attenuated using local strains from Sudan, Tunisia, Egypt and Morocco should be exploited to generate a comprehensive catalogue of genetic variation across this regional collection of attenuated live vaccines.
Directional Transport of Propelled Brownian Particles Confined in a Smooth Corrugated Channel with Colored Noise
Creators: name: Wang, Bing
name: Chen, Hao
name: Wu, Yong
Publisher: name: arXiv
Year: 2019
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Adaptation and Self-Organizing Systems (nlin.AO)
subject: Data Analysis, Statistics and Probability (physics.data-an)
subject: FOS: Physical sciences

description: The transport phenomenon(directional movement) of self-propelled Brownian particles moving in a smooth corrugated confined channel is investigated. It is found that large $x$ direction noise intensity should reduce particles directional movement when the angle Gaussian noise intensity is small. The average velocity has a maximum with increasing $x$ direction noise intensity when angle Gaussian noise intensity is large. $y$ directional noise has negligible effect on $x$ directional movement. Large angle Gaussian noise intensity should weaken the directional transport. Interestingly, the movement direction changes more than once with increasing periodic force amplitude.
Magnetorotational instability of dissipative Couette flow
Creators: name: Goodman, Jeremy
name: Ji, Hantao
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Global axisymmetric stability of viscous, resistive, magnetized Couette flow is re-examined, with the emphasis on flows that would be hydrodynamically stable according to Rayleigh's criterion: opposing gradients of angular velocity and specific angular momentum. In this regime, magnetorotational instabilities [MRI] may occur. Previous work has focused on the Rayleigh-unstable regime. To prepare for an experimental study of MRI, which are of intense astrophysical interest, we solve for global linear modes in a wide gap with realistic dissipation coefficients. Exchange of stability appears to occur through marginal modes. Velocity eigenfunctions of marginal modes are nearly singular at conducting boundaries, but magnetic eigenfunctions are smooth and obey a fourth-order differential equation in the inviscid limit. The viscous marginal system is of tenth order; an eighth-order approximation previously used for Rayleigh-unstable modes does not permit MRI. Peak growth rates are insensitive to boundary conditions. They are predicted with surprising accuracy by WKB methods even for the largest-scale mode. We conclude that MRI is achievable under plausible experimental conditions using easy-to-handle liquid metals such as gallium.
description: 19 pages, 7 figures. Submitted to J. Fluid Mech
The Coevolution of Banks and Corporate Securities Markets: The Financing of Belgium's Industrial Take-Off in the 1830s
Creators: name: Ugolini, Stefano
Publisher: name: arXiv
Year: 2019
Subjects: subject: General Finance (q-fin.GN)
subject: Trading and Market Microstructure (q-fin.TR)
subject: FOS: Economics and business

description: Recent developments in the literature on financial architecture suggest that banks and markets not only coexist, but also coevolve in ways that are non-neutral from the viewpoint of optimality. This article aims to analyse the concrete mechanisms of this coevolution by focusing on a very relevant case study: Belgium (the first Continental country to industrialize) at the time of the very first emergence of a modern financial system (the 1830s). The article shows that intermediaries played a crucial role in developing secondary securities markets (as banks acted as securitizers), but market conditions also had a strong feedback on banks' balance sheets and activities (as banks also acted as market-makers for the securities they had issued). The findings suggest that not only structural, but also cyclical factors can be important determinants of changes in financial architecture.
Atractides (Atractides) similis
Creators: name: Smit, H.
name: Gerecke, R.
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Hygrobatidae
Atractides
Atractides similis

description: Atractides (Atractides) similis (E. Angelier, 1949)
 Megapus similis E. Angelier, 1949a: 89.
 Atractides similis (E. Angelier, 1949b): 235; Gerecke 2003: 264.
 Atractides simillimus E. Angelier, 1953: E. Angelier 1953b: 93.
Distribution in France: IsŁre, PyrØnØes (PyrØnØes-Atlantiques, PyrØnØes-Orientales).
description: Published as part of Smit, H. & Gerecke, R., 2010, A CHECKLIST OF THE WATER MITES OF FRANCE (ACARI: HYDRACHNIDIA) Harry S and Reinhard G, pp. 21-91 in Acarologia 50 (1) on page 55, DOI: 10.1051/acarologia/20101952, http://zenodo.org/record/5392293
Blood calcium concentration and performance in periparturient and early lactating dairy cows is influenced by plant bioactive lipid compounds
Creators: name: Ott, D.
name: Manneck, D.
name: Schrapers, K.T.
name: Rosendahl, J.
name: Aschenbach, Jörg R.
Publisher: name: Freie Universität Berlin
Year: 2023
Subjects: subject: calcium absorption
subject: hypocalcemia
subject: transition dairy cow
subject: phytogenic compounds
subject: 600 Technik, Medizin, angewandte Wissenschaften::630 Landwirtschaft::630 Landwirtschaft und verwandte Bereiche

description: Previous studies ex vivo suggested that plant bioactive lipid compounds (PBLC) can increase ruminal calcium absorption. Therefore, we hypothesized that PBLC feeding around calving may potentially counteract hypocalcemia and support performance in postpartum dairy cows. The corresponding aim of the study was to investigate the effect of PBLC feeding on blood minerals in Brown Swiss (BS) and hypocalcemia-susceptible Holstein Friesian (HF) cows during the period from d −2 to 28 relative to calving and on milk performance until d 80 of lactation. A total of 29 BS cows and 41 HF cows were divided each into a control (CON) and PBLC treatment group. The latter was supplemented with 1.7 g/d menthol-rich PBLC from 8 d before expected calving to 80 d postpartum. Milk yield and composition, body condition score and blood minerals were measured. Feeding PBLC induced a significant breed × treatment interaction for iCa, supporting that PBLC increased iCa exclusively in HF cows; the increase was 0.03 mM over the whole period and 0.05 mM from d 1 to 3 after calving. Subclinical hypocalcemia was seen in one BS-CON and 8 HF-CON cows and 2 BS-PBLC and 4 HF-PBLC cows. Clinical milk fever was detected only in HF cows (2 HF-CON and one HF-PBLC). Other tested blood minerals, such as sodium, chloride, and potassium, as well as blood glucose, were neither affected by PBLC feeding nor breed, nor were their 2-way interactions, except for higher sodium levels in PBLC cows on d 21. Body condition score showed no effect of treatment, except for a lower body condition score in BS-PBLC compared with BS-CON at d 14. Dietary PBLC increased milk yield, milk fat yield, and milk protein yield at 2 consecutive dairy herd improvement test days. As indicated by treatment × day interactions, energy-corrected milk yield and milk lactose yield were increased by PBLC on the first test day only, and milk protein concentration decreased from test d 1 to test d 2 in CON only. The concentrations of fat, lactose, and urea, as well as somatic cell count, were not affected by treatment. The weekly milk yield over the first 11 wk of lactation was 29.5 kg/wk higher for PBLC versus CON across breeds. It is concluded that the applied PBLC induced a small but measurable improvement of calcium status in HF cows in the study period and had additional positive effects on milk performance in both breeds.
Assembling integrable sigma-models as affine Gaudin models
Creators: name: Delduc, Francois
name: Lacroix, Sylvain
name: Magro, Marc
name: Vicedo, Benoit
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We explain how to obtain new classical integrable field theories by assembling two affine Gaudin models into a single one. We show that the resulting affine Gaudin model depends on a parameter $γ$ in such a way that the limit $γ\to 0$ corresponds to the decoupling limit. Simple conditions ensuring Lorentz invariance are also presented. A first application of this method for $σ$-models leads to the action announced in [Phys. Rev. Lett. 122 (2019) 041601] and which couples an arbitrary number $N$ of principal chiral model fields on the same Lie group, each with a Wess-Zumino term. The affine Gaudin model descriptions of various integrable $σ$-models that can be used as elementary building blocks in the assembling construction are then given. This is in particular used in a second application of the method which consists in assembling $N-1$ copies of the principal chiral model each with a Wess-Zumino term and one homogeneous Yang-Baxter deformation of the principal chiral model.
description: 72 pages
Sympiesis linifoliellae Delucchi 1962
Creators: name: Baur, Hannes
Publisher: name: Zenodo
Year: 2001
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Eulophidae
Sympiesis
Sympiesis linifoliellae

description: Sympiesis linifoliellae Delucchi (Eulophidae)
 Sympiesis (Cladosympiesis) linifoliellae Delucchi, 1962c: 60. Holotype m, Morocco: E KeÂnitra, crossing to Tanger and Sidi-Kacem (VD [examined]).
 Material. HOLOTYPE m (mp) labelled`ex L. linifoliella Kenitra [sic] II.1961 V. Delucchi leg.; Sympiesis linifoliellae n. V. Delucchi det.; HOLOTYPE [red]’.
PARATYPES, VD: 11 mm, 2 ll, allotype l(mp). Two slides (sc) with antennae and fore wings (1962c: 61, ®gures 10±12) of female and male paratypes.
 Remarks. Two female paratypes mentioned by Delucchi could not be located.
 Status. Junior synonym of Sympiesis gregori BoucÏek (BoucÏek and Askew, 1968: 44).
description: Published as part of Baur, Hannes, 2001, The Hymenoptera (Chalcidoidea, Ichneumonoidea, Platygastroidea) described by Vittorio Delucchi: an annotated catalogue, pp. 55-125 in Journal of Natural History 35 (1) on page 112, DOI: 10.1080/002229301447899, http://zenodo.org/record/5275865
Forecasting Weakly Correlated Time Series in Tasks of Electronic Commerce
Creators: name: Kirichenko, Lyudmyla
name: Radivilova, Tamara
name: Zinkevich, Illya
Publisher: name: arXiv
Year: 2019
Subjects: subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences
subject: D.4.6; E.3; C.2
subject: 90B18

description: Forecasting of weakly correlated time series of conversion rate by methods of exponential smoothing, neural network and decision tree on the example of conversion percent series for an electronic store is considered in the paper. The advantages and disadvantages of each method are considered.
description: 4 pages, 4 figures, 1 table
Group Re-Identification with Multi-grained Matching and Integration
Creators: name: Lin, Weiyao
name: Li, Yuxi
name: Xiao, Hao
name: See, John
name: Zou, Junni
name: Xiong, Hongkai
name: Wang, Jingdong
name: Mei, Tao
Publisher: name: arXiv
Year: 2019
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: The task of re-identifying groups of people underdifferent camera views is an important yet less-studied problem.Group re-identification (Re-ID) is a very challenging task sinceit is not only adversely affected by common issues in traditionalsingle object Re-ID problems such as viewpoint and human posevariations, but it also suffers from changes in group layout andgroup membership. In this paper, we propose a novel conceptof group granularity by characterizing a group image by multi-grained objects: individual persons and sub-groups of two andthree people within a group. To achieve robust group Re-ID,we first introduce multi-grained representations which can beextracted via the development of two separate schemes, i.e. onewith hand-crafted descriptors and another with deep neuralnetworks. The proposed representation seeks to characterize bothappearance and spatial relations of multi-grained objects, and isfurther equipped with importance weights which capture varia-tions in intra-group dynamics. Optimal group-wise matching isfacilitated by a multi-order matching process which in turn,dynamically updates the importance weights in iterative fashion.We evaluated on three multi-camera group datasets containingcomplex scenarios and large dynamics, with experimental resultsdemonstrating the effectiveness of our approach. The published dataset can be found in \url{http://min.sjtu.edu.cn/lwydemo/GroupReID.html}
description: 14 pages, 10 figures, to appear in IEEE transaction on Cybernetics
Dark ice in a warming world: advances and challenges in the study of Greenland Ice Sheet's biological darkening
Creators: name: Halbach, Laura
name: Chevrollier, Lou-Anne
name: Cook, Joseph M.
name: Stevens, Ian T.
name: Hansen, Martin
name: Anesio, Alexandre Magno
name: Benning, Liane G.
name: Tranter, Martyn
Publisher: name: Freie Universität Berlin
Year: 2023
Subjects: subject: Albedo
subject: BioSNICAR
subject: glacier ice algae
subject: growth
subject: hydrology
subject: model
subject: mortality
subject: weathering crust
subject: 500 Naturwissenschaften und Mathematik::550 Geowissenschaften, Geologie::550 Geowissenschaften

description: The surface of the Greenland Ice Sheet is darkening, which accelerates its surface melt. The role of glacier ice algae in reducing surface albedo is widely recognised but not well quantified and the feedbacks between the algae and the weathering crust remain poorly understood. In this letter, we summarise recent advances in the study of the biological darkening of the Greenland Ice Sheet and highlight three key research priorities that are required to better understand and forecast algal-driven melt: (i) identifying the controls on glacier ice algal growth and mortality, (ii) quantifying the spatio-temporal variability in glacier ice algal biomass and processes involved in cell redistribution and (iii) determining the albedo feedbacks between algal biomass and weathering crust characteristics. Addressing these key research priorities will allow us to better understand the supraglacial ice-algal system and to develop an integrated model incorporating the algal and physical controls on ice surface albedo.
Atractides (Atractides) subasper Koenike 1902
Creators: name: Smit, H.
name: Gerecke, R.
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Hygrobatidae
Atractides
Atractides subasper

description: Atractides (Atractides) subasper Koenike, 1902
 Atractides subasper Koenike, 1902: E. Angelier 1953b: 61, 1953f: 46, 1957a: 24, 1959: 16, 1959a: 66; Lundblad 1956a: 3; Nicolau-Guillaumet 1959: 237; E. Angelier et al. 1963: 462; Mota¸s & C. Angelier 1967: 17; Santucci 1971: 83; M.-L. Angelier 1980: 14; E. Angelier et al. 1985: 31.
Distribution in France: Corsica, Gers, PyrØnØes (Hautes-PyrØnØes, PyrØnØes-Orientales), Tarn.
description: Published as part of Smit, H. & Gerecke, R., 2010, A CHECKLIST OF THE WATER MITES OF FRANCE (ACARI: HYDRACHNIDIA) Harry S and Reinhard G, pp. 21-91 in Acarologia 50 (1) on page 56, DOI: 10.1051/acarologia/20101952, http://zenodo.org/record/5392293
Strong Evidence for a Buried AGN in UGC 5101: Implications for LINER-Type Ultra-Luminous Infrared Galaxies
Creators: name: Imanishi, Masatoshi
name: Dudley, C. C.
name: Maloney, Philip R.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We report on the results of 3--4 $μ$m spectroscopy of the ultra-luminous infrared galaxy (ULIRG) UGC 5101. It has a cool far-infrared color and a LINER-type optical spectrum, and so, based on a view gaining some currency, would be regarded as dominated by star formation. However, we find that it has strong 3.4 $μ$m carbonaceous dust absorption, low-equivalent-width 3.3 $μ$m polycyclic aromatic hydrocarbon (PAH) emission, and a small 3.3 $μ$m PAH to far-infrared luminosity ratio. This favors an alternative scenario, in which an energetically dominant AGN is present behind obscuring dust. The AGN is plausibly obscured along all lines of sight (a `buried AGN'), rather than merely obscured along our particular line of sight. Such buried AGNs have previously been found in thermal infrared studies of the ULIRGs IRAS 08572+3915 and IRAS F00183$-$7111, both classified optically as LINERs. We argue that buried AGNs can produce LINER-type optical spectra, and that at least some fraction of LINER-type ULIRGs are predominantly powered by buried AGNs.
description: 11 pages, 1 figure, accepted by ApJ Letter
Excess mortality during the COVID-19 pandemic in low-income and lower middle-income countries: protocol for a systematic review and meta-analysis
Creators: name: Gmanyami, Jonathan Mawutor
name: Jarynowski, Andrzej
name: Belik, Vitaly
name: Lambert, Oscar
name: Amuasi, John Humphrey
name: Quentin, Wilm
Publisher: name: Freie Universität Berlin
Year: 2024
Subjects: subject: COVID-19
subject: public health
subject: SARS-CoV-2 infection
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::616 Krankheiten

description: Introduction The COVID-19 pandemic has been marked by a massive death toll. However, the overall effect of the pandemic, including potential unintended negative impacts of some control measures, on mortality remains poorly understood in low-income and lower middle-income countries (LLMICs). This review aims to summarise the available literature on excess mortality in LLMICs, focusing on the methods and data sources used in estimating excess mortality and the drivers of excess mortality. Methods and analysis We will review the available literature and report results in line with the Preferred Reporting Items for Systematic Review and Meta-Analysis. Searches will be conducted in PubMed, Embase, Web of Science, Cochrane Library, Google Scholar and Scopus. All published studies that report on the estimates of excess mortality in populations of LLMICs will be included. This will include those with a publication date from 2019 onwards and those with at least a 1-year non-COVID-19 period as the comparator in the estimation of excess mortality during the pandemic. There will be no language restrictions on the search. The meta-analysis will include studies with extractable data on excess mortality, methods, population size, and observed and expected deaths. We will use the Mantel-Haenszel method to estimate the pooled risk ratio with 95% CIs. Ethics and dissemination As there is no primary data collection, there is no requirement for ethical review. The results will be disseminated through peer-reviewed journal publication and conference presentations.
Atractides (Atractides) subterraneus
Creators: name: Smit, H.
name: Gerecke, R.
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Hygrobatidae
Atractides
Atractides subterraneus

description: Atractides (Atractides) subterraneus (K. Viets, 1932)
 Atractides subterraneus (K. Viets, 1932): E. Angelier 1953b: 106.
Distribution in France: PyrØnØes-Orientales.
description: Published as part of Smit, H. & Gerecke, R., 2010, A CHECKLIST OF THE WATER MITES OF FRANCE (ACARI: HYDRACHNIDIA) Harry S and Reinhard G, pp. 21-91 in Acarologia 50 (1) on page 56, DOI: 10.1051/acarologia/20101952, http://zenodo.org/record/5392293
A Survey of Automatic Generation of Source Code Comments: Algorithms and Techniques
Creators: name: Song, Xiaotao
name: Sun, Hailong
name: Wang, Xu
name: Yan, Jiafei
Publisher: name: arXiv
Year: 2019
Subjects: subject: Software Engineering (cs.SE)
subject: FOS: Computer and information sciences

description: As an integral part of source code files, code comments help improve program readability and comprehension. However, developers sometimes do not comment on their program code adequately due to the incurred extra efforts, lack of relevant knowledge, unawareness of the importance of code commenting or some other factors. As a result, code comments can be inadequate, absent or even mismatched with source code, which affects the understanding, reusing and the maintenance of software. To solve these problems of code comments, researchers have been concerned with generating code comments automatically. In this work, we aim at conducting a survey of automatic code commenting researches. First, we generally analyze the challenges and research framework of automatic generation of program comments. Second, we present the classification of representative algorithms, the design principles, strengths and weaknesses of each category of algorithms. Meanwhile, we also provide an overview of the quality assessment of the generated comments. Finally, we summarize some future directions for advancing the techniques of automatic generation of code comments and the quality assessment of comments.
description: 22 pages, 5 figures
Systasis coerulea Delucchi
Creators: name: Baur, Hannes
Publisher: name: Zenodo
Year: 2001
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Pteromalidae
Systasis
Systasis coerulea

description: Systasis coerulea Delucchi (Pteromalidae)
 Systasis coerulea Delucchi, 1962d: 389. Holotype m, Tanzania: Province Kilimanjaro, Marangu, SE slope (MRAC [examined]).
 Material. HOLOTYPE m (cp, right ¯agellum beyond fourth segment lacking) labelled` HOLOTYPUS [orange±red, not original]; reÂgion boca-geÁre et zone des cultures [blue]; versant S. E. 1600±1750 m. [blue]; COLL. MUS. CONGO Tanganyika Terr.: Kiliman-jaro, Marangu 13/ 20-VII-1957; Mission Zoolog. I.R.S.A.C. en Afrique orientale (P. Basilewsky et N. Leleup); HOLOTYPE [red]; Systasis coerulea n. sp. V. Delucchi leg. [sic]’.
 Status. Systasis coerulea Delucchi.
description: Published as part of Baur, Hannes, 2001, The Hymenoptera (Chalcidoidea, Ichneumonoidea, Platygastroidea) described by Vittorio Delucchi: an annotated catalogue, pp. 55-125 in Journal of Natural History 35 (1) on page 112, DOI: 10.1080/002229301447899, http://zenodo.org/record/5275865
Atractides (Polymegapus) polyporus
Creators: name: Smit, H.
name: Gerecke, R.
Publisher: name: Zenodo
Year: 2010
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Hygrobatidae
Atractides
Atractides polyporus

description: Atractides (Polymegapus) polyporus (Viets, 1922)
 Megapus polyporus Viets, 1922: Migot 1926b: 129; Mota¸s & ¸ Soarec 1939a: Appendix.
 New record. Gard: 1/3/0, helocrene at campsite MourØtou, N of Valleraugue, 44°05.203 N 3°36.500 E, alt. 418 m a.s.l., 15 May 2005, leg. H. Smit.
Distribution in France: Gard, PyrØnØes (PyrØnØes-Orientales, Hautes-PyrØnØes).
 Atractides (Tympanomegapus) acutirostris (Mota¸s & C. Angelier, 1927)
 Megapus acutirostris Mota ¸s & C. Angelier, 1927: 8; Mota¸s 1928f: 185.
 Atractides pavesii Maglio, 1905: Lundblad 1956a: 3; E. Angelier 1959: 16, 1959a: 65 (see Gerecke 2003); Picard 1962: 486; Santucci 1971: 83; E. Angelier et al. 1985: 31.
 Atractides acutirostris (Mota¸s & C. Angelier, 1927): M.-L. Angelier 1980: 14; Gerecke 2003: 336.
 New records. ArdŁche: 0/1/0, La Drobie RiviŁre, NW of Ribes, 44°32.256 N 4°3.364 E, 1 May 2003, leg. H. Smit; 0/1/0, l’ArdŁche RiviŁre at Balazuc, 44°30.692 N 4°22.869 E, 29 April 2003, leg. H. Smit.
Distribution in France: ArdŁche, CorrŁze, Corsica, Gers, Meurthe-et-Moselle, Puy-de-Dôme, PyrØnØes (Hautes-PyrØnØes, PyrØnØes-Orientales).
description: Published as part of Smit, H. & Gerecke, R., 2010, A CHECKLIST OF THE WATER MITES OF FRANCE (ACARI: HYDRACHNIDIA) Harry S and Reinhard G, pp. 21-91 in Acarologia 50 (1) on page 57, DOI: 10.1051/acarologia/20101952, http://zenodo.org/record/5392293