cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1: of The clonal evolution of two distinct T315I-positive BCR-ABL1 subclones in a Philadelphia-positive acute lymphoblastic leukemia failing multiple lines of therapy: a case report
Creators: name: Benedittis, Caterina De
name: Papayannidis, Cristina
name: Venturi, Claudia
name: Abbenante, Maria
name: Paolini, Stefania
name: Parisi, Sarah
name: Sartor, Chiara
name: Cavo, Michele
name: Martinelli, Giovanni
name: Soverini, Simona
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Comparison between mutations detected by conventional Sanger sequencing and Deep sequencing and estimated clonal composition of the samples. Mutation-relative abundance of conventional Sanger Sequencing results was assessed on the basis of variant peak height. In the TKI/treatment column, the TKI or the treatment being administered at the time of analysis is indicated. In sample ALL-8 and 11, “T315?” denotes that 2 overlapping peaks at adjacent positions (c/t at 1091 and t/c at 1092) of codon 315 were identified in the Sanger Sequencing chromatogram and the resulting amino acid substitution(s) could not be resolved. (PDF 209 kb)
MOESM1 of A frailty index predicts post-liver transplant morbidity and mortality in HIV-positive patients
Creators: name: Guaraldi, Giovanni
name: Dolci, Giovanni
name: Zona, Stefano
name: Tarantino, Giuseppe
name: Serra, Valentina
name: Ballarin, Roberto
name: Franceschini, Erica
name: Codeluppi, Mauro
name: Brothers, Thomas
name: Mussini, Cristina
name: Benedetto, Fabrizio
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Plant Biology
subject: FOS: Biological sciences
subject: Virology
subject: Computational Biology

description: Additional file 1: Figure S1. Prevalence of Optimal transplant at year 1, year 3 and year 5 visit.
Pheidole arachnion
Creators: name: Longino, J. T.
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Pheidole
Pheidole arachnion

description: Pheidole arachnion
Pheidole arachnion Wilson, 2003: 656, figs. Holotype major worker and associated paratype minor worker: Costa Rica, Prov. Cartago, Rio Reventazon, 3-5km E Turrialba, 18-22 Jan 1973 (W. L. Brown) [MCZ] (examined).
Pheidole iracunda Wilson, 2003: 712, figs. Holotype major worker and associated paratype minor worker: Costa Rica, Prov. Heredia, La Selva Biological Station (Cover, Moffett, Tobin) [MCZ] (examined). New synonymy.
Geographic Range
Costa Rica.
Biology
This species occurs in wet forest habitats, from sea level to 1100m elevation. Workers, minors and majors, can be moderately abundant in Winkler or Berlese samples of forest floor litter but are rarely collected at baits. The lack of occurence at baits suggests largely nocturnal foraging or foraging restricted to areas beneath litter or in rotten wood. One nest is known, from rotten wood on the forest floor.
Comments
Numerous collections from the Atlantic lowlands of Costa Rica show that the differences between P. arachnion and P. iracunda cited by Wilson (2003) are intraspecific.
description: Published as part of Longino, J. T., 2009, Additions to the taxonomy of New World Pheidole (Hymenoptera: Formicidae)., pp. 1-90 in Zootaxa 2181 on page 13
Machine learning algorithms to predict the risk of rupture of intracranial aneurysms: a systematic review
Creators: name: Daga, Karan
name: Agarwal, Siddharth
name: Moti, Zaeem
name: Lee, Matthew BK
name: Din, Munaib
name: Wood, David
name: Modat, Marc
name: Booth, Thomas C
Publisher: name: arXiv
Year: 2024
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Machine Learning (cs.LG)
subject: Quantitative Methods (q-bio.QM)
subject: FOS: Computer and information sciences
subject: FOS: Biological sciences

description: Purpose: Subarachnoid haemorrhage is a potentially fatal consequence of intracranial aneurysm rupture, however, it is difficult to predict if aneurysms will rupture. Prophylactic treatment of an intracranial aneurysm also involves risk, hence identifying rupture-prone aneurysms is of substantial clinical importance. This systematic review aims to evaluate the performance of machine learning algorithms for predicting intracranial aneurysm rupture risk.
 Methods: MEDLINE, Embase, Cochrane Library and Web of Science were searched until December 2023. Studies incorporating any machine learning algorithm to predict the risk of rupture of an intracranial aneurysm were included. Risk of bias was assessed using the Prediction Model Risk of Bias Assessment Tool (PROBAST). PROSPERO registration: CRD42023452509. Results: Out of 10,307 records screened, 20 studies met the eligibility criteria for this review incorporating a total of 20,286 aneurysm cases. The machine learning models gave a 0.66-0.90 range for performance accuracy. The models were compared to current clinical standards in six studies and gave mixed results. Most studies posed high or unclear risks of bias and concerns for applicability, limiting the inferences that can be drawn from them. There was insufficient homogenous data for a meta-analysis.
 Conclusions: Machine learning can be applied to predict the risk of rupture for intracranial aneurysms. However, the evidence does not comprehensively demonstrate superiority to existing practice, limiting its role as a clinical adjunct. Further prospective multicentre studies of recent machine learning tools are needed to prove clinical validation before they are implemented in the clinic.
description: Clin Neuroradiol (2024)
title: Looking beyond the content plane – Modal assessment in Norwegian learners’ texts in German as a foreign language
Creators: name: Hamann, Veronika
Publisher: name: UNSPECIFIED
Year: 2025

description: This article seeks to obtain a better understanding of interpersonal meaning-making in short written responses by Norwegian learners of German as a foreign language by analysing the modal assessment strategies used in four different task settings. Based on the framework of Systemic Functional Linguistics, the study focuses on how modal verbs, modal adjuncts and corresponding paraphrases are employed, and on the meanings which are realised accordingly. The study identifies several strategies and shows how they contribute to expressing different attitudes and to enacting different social relations. Overall, the study raises awareness of the central role of modal assessment in writing.
Syrphus shorae Fluke 1950
Creators: name: Barahona-Segovia, Rodrigo M.
name: Riera, Pamela
name: Pañinao-Monsálvez, Laura
name: Guzmán, Vicente Valdés
name: Henríquez-Piskulich, Patricia
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Syrphidae
Syrphus
Syrphus shorae

description: Syrphus shorae Fluke, 1950
Fig. 204
Syrphus shorae Fluke, 1950b: 440
Syrphus bisinuatus Williston, 1891 –1892: 17
Syrphus willistoni Fluke, 1942: 3
Type locality and data. “ Mexico, Guerrero, Omiltemi, Costa Rica, Volcan de Irazu, Rio Sucio ” (HT, ♀, BMNH).
Material examined. Valparaíso: 1♂, Bosque Quintero, 31.X.1979, Leg. G. Cerda (MNHNCL); Metropolitana: 1♀, Lo Marín, Caleu, 11.XI.1984, Leg. M. Cerda (MNHNCL); 1♂, Santiago, 24.VIII.1990, Leg. R. Trincado (INIA); 1♂, Ñuñoa, 29.IX.1982, Leg. M. Cerda (MNHNCL); 1♀, La Platina, V.1961, Leg. NN (INIA); 2♂, 1♀,
Quebrada de la Plata, 23.IV.1966, Leg. N. Hichins (MEUC); O’Higgins: 1♂, Nancagua, 29.XII.81, Leg. I. Barros (MNHNCL).
References. Williston, 1891 –1892: 17 (desc.); Giglio Tos, 1892a: 28 (desc.); Aldrich, 1905: 365 (desc.); Hine, 1914: 337 (desc.); Fluke, 1942: 22, fig. 2 (abdomen); Fluke, 1950a: 117, fig. 14 (M genitalia); Fluke, 1950b: 440 (desc.); Fluke, 1956: 198 (cat.); Etcheverry, 1963: 86 (cat.); Thompson et al., 1976: 8 (cat.); Thompson et al., 2000: 40 (desc. & key); Cevallos, 1973: 27, figs 1–2 (adult), figs 1–5 (head, puparium and larvae) (desc.); Arcaya et al., 2013: 145 (larvae predatory); Montoya, 2016: 479 (cat.).
World distribution. Argentina, Colombia, Costa Rica, Ecuador, Guatemala, Panamá, Peru, Mexico, Venezuela and Chile.
Chilean distribution. From Valparaíso to O’Higgins region (Fig. 205).
Altitudinal range. From coastal to precordillera ecosystems (5– 1,310 m.a.s.l.).
Biology and notes. Syrphus shorae is a species widely distributed in the Neotropical region (Montoya 2016). In Chile, the distribution of this species might be underestimated as citizen science records have shown it has a wide distribution. Thus, it might not have conservation problems. This species has been observed visiting flowers of Plectranthus sp. (Victoria Kunst, CSP record); Plectranthus ciliatus E. Mey. ex Benth (César Martínez, CSP record) and L. maritima (Gabriela Germain, CSP record).
Conservation status. LC; AOO = 7,955 km 2 (potentially higher), EOO = 28 km 2, six localities (or subpopulations). This species is widely distributed in all Neotropical region.
Genus Victoriana Miranda, 2020 in Miranda et al., 2020
Type-species: Baccha melanorrhina Philippi, 1865; Baccha victoria species group, in part. Hull (1949c) Ocyptamus mentor species group. Mengual et al. (2012); Ocyptamus melanorrhinus species group. Miranda et al. (2016); Mengual et al. (2018b).
description: Published as part of Barahona-Segovia, Rodrigo M., Riera, Pamela, Pañinao-Monsálvez, Laura, Guzmán, Vicente Valdés & Henríquez-Piskulich, Patricia, 2021, Updating the knowledge of the flower flies (Diptera: Syrphidae) from Chile: Illustrated catalog, extinction risk and biological notes, pp. 1-178 in Zootaxa 4959 (1) on pages 146-149, DOI: 10.11646/zootaxa.4959.1.1, http://zenodo.org/record/4693464
Pheidole angusticeps
Creators: name: Longino, J. T.
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Pheidole
Pheidole angusticeps

description: Pheidole angusticeps
Pheidole angusticeps Wilson, 2003: 609, figs. Holotype major worker and associated paratype minor worker: Costa Rica, Guanacaste, Islas de Murcielagos, Isla San Jose, Santa Rosa National Park, 22 Oct 1992, tuna bait (Olson) [MCZ] (examined).
Pheidole gradifer Wilson, 2003: 613, figs. Holotype major worker and associated minor paratype worker: Costa Rica, Guanacaste, Santa Rosa National Park, 1km E station, 280m, 19 Oct 1992, tropical dry forest, tuna bait (Olson) [MCZ] (examined). Bolton et al. 2006: emended to P. gradifera. New synonymy.
Geographic Range
Costa Rica.
Biology
This species occurs in second growth dry forest habitats in northwestern Costa Rica. It has been collected at tuna baits on the ground, in samples of leaf litter, and as prey of Neivamyrmex alfaroi.
Comments
The minor of Pheidole angusticeps has a narrow head, with CI 80-83. In the description of Pheidole gradifera the minor is reported to have CI 94 and the line drawing shows the head about as long as wide. However, this must be due to measurement error; the types of P. gradifera are typical P. angusticeps, and the minor worker has a narrow head.
description: Published as part of Longino, J. T., 2009, Additions to the taxonomy of New World Pheidole (Hymenoptera: Formicidae)., pp. 1-90 in Zootaxa 2181 on pages 12-13
MOESM1 of Concentration of Plasmodium falciparum gametocytes in whole blood samples by magnetic cell sorting enhances parasite infection rates in mosquito feeding assays
Creators: name: Isaie Reuling
name: Stone, Will
name: Vegte-Bolmer, Marga De
name: Geert-Jan Gemert
name: Siebelink-Stoter, Rianne
name: Graumans, Wouter
name: Lanke, Kjerstin
name: Bousema, Teun
name: Sauerwein, Robert
Publisher: name: Figshare
Year: 2017
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Figure S1. Association between gametocyte densities and oocystâ  prevalence and density. A. Overview of gametocyte densities and infection rates of experiments of Figs.Â 1, 2, 3, 4 and Additional file 2: Figure S2. B. Overview of gametocyte densities and mean oocysts of experiments of Figs.Â 1, 2, 3, 4 and Additional file 2: Figure S2.
MOESM1 of The establishment of a WHO Reference Reagent for anti-malaria (Plasmodium falciparum) human serum
Creators: name: Bryan, Donna
name: Nilupa Silva
name: Rigsby, Peter
name: Dougall, Thomas
name: Corran, Patrick
name: Bowyer, Paul
name: Ho, Mei
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Hematology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1. Supplemental figure and tables.
Benefit and limitations of the application of the TRUST principles on the jointly managed IPCC Data Distribution Centre
Creators: name: Stockhause, Martina
name: Gutiérrez, José Manuel
name: Xing, Xiaoshi
Publisher: name: Zenodo
Year: 2024

description: The Intergovernmental Panel on Climate Change (IPCC) compiles assessments of the science related to climate change based on peer-reviewed literature from a range of disciplines and the analysis and review of the underlying data. The quality of the results and the transparency of their generation are critical to trust in the IPCC and its outcomes. The introduction of the FAIR Guidelines in the Sixth Assessment Report (AR6) enhanced its transparency through provenance documentation of the generated figures and the data products served by the IPCC Data Distribution Centre (DDC). Open, FAIR and TRUSTworthy interdisciplinary data stored across several repositories are relevant during the assessment and for the dissemination of its results.

 

The infrastructure and data services are maintained by IPCC IT, IPCC Working Groups (WGs) and the DDC Partners. Challenges lie in the shared responsibility for the sustainability of the federated infrastructure and data services, their suitability for a broad, cross-disciplinary user community, and the emerging interactive data services such as the IPCC WGI Interactive Atlas, which generates a range of further data products. The IPCC practice of closing and re-establishing WGs for each cycle, with the associated changing partners, as well as funding constraints pose a risk to the continuity of a reliable high-quality IPCC data service.

The contribution discusses benefits and limitations of an application of the TRUST principles to such a jointly managed data center.
Social representations of therapist self-care and well-being: a thematic analysis of peak body media
Creators: name: Lorraway, Mimirose
name: Wilkinson, Sarah
name: Sargeant, Sally
Publisher: name: Taylor & Francis
Year: 2024
Subjects: subject: Biochemistry
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Science Policy
subject: Mental Health
subject: Cardiology

description: Therapist self-care supports their well-being and ability to support clients, making a culture of self-care driven by peak bodies of paramount importance. Limited research has examined how the issue of therapist self-care and well-being is depicted within these peak bodies. This study explored representations of therapist well-being and self-care in media articles from professional peak bodies to better understand how the issue is discussed. Drawing on Social Representation Theory, 53 media articles were selected from the websites of six peak bodies – the organisations providing professional guidance and advocacy for therapists – representing therapists (counsellors, psychotherapists, and psychologists) across Australia and Aotearoa, New Zealand, and were analysed using reflexive thematic analysis. Three themes were generated. Therapists in Exceptional Circumstances reflected well-being within broader systemic and environmental issues. Adversity as Commonplace revealed the prevalence of burnout depiction with overwhelming job demands. Client and Therapist Mutually Impacted highlighted the moral distress experienced by therapists reducing client contact as a form of self-care. The impact of the COVID-19 pandemic on the therapy professions shows the need for positive representations of therapist well-being within peak body media. Open dialogues should address therapists’ moral distress while managing self-care, and peak bodies must take a more active role in promoting a culture of self-care. What is already known about this topic:Therapist self-care is essential to providing optimal care to clients.Therapists can struggle to manage self-care.Online spaces can help to provide resources for and represent self-care. Therapist self-care is essential to providing optimal care to clients. Therapists can struggle to manage self-care. Online spaces can help to provide resources for and represent self-care. What this topic adds:Insight into how online peak body media articles might represent self-care and well-being.How social representations assist in the construction of therapist well-being.Public portrayal of therapists may influence their capacity to manage self-care. Insight into how online peak body media articles might represent self-care and well-being. How social representations assist in the construction of therapist well-being. Public portrayal of therapists may influence their capacity to manage self-care.
Additional file 1: of The clonal evolution of two distinct T315I-positive BCR-ABL1 subclones in a Philadelphia-positive acute lymphoblastic leukemia failing multiple lines of therapy: a case report
Creators: name: Benedittis, Caterina De
name: Papayannidis, Cristina
name: Venturi, Claudia
name: Abbenante, Maria
name: Paolini, Stefania
name: Parisi, Sarah
name: Sartor, Chiara
name: Cavo, Michele
name: Martinelli, Giovanni
name: Soverini, Simona
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Comparison between mutations detected by conventional Sanger sequencing and Deep sequencing and estimated clonal composition of the samples. Mutation-relative abundance of conventional Sanger Sequencing results was assessed on the basis of variant peak height. In the TKI/treatment column, the TKI or the treatment being administered at the time of analysis is indicated. In sample ALL-8 and 11, “T315?” denotes that 2 overlapping peaks at adjacent positions (c/t at 1091 and t/c at 1092) of codon 315 were identified in the Sanger Sequencing chromatogram and the resulting amino acid substitution(s) could not be resolved. (PDF 209 kb)
MOESM2 of Concentration of Plasmodium falciparum gametocytes in whole blood samples by magnetic cell sorting enhances parasite infection rates in mosquito feeding assays
Creators: name: Isaie Reuling
name: Stone, Will
name: Vegte-Bolmer, Marga De
name: Geert-Jan Gemert
name: Siebelink-Stoter, Rianne
name: Graumans, Wouter
name: Lanke, Kjerstin
name: Bousema, Teun
name: Sauerwein, Robert
Publisher: name: Figshare
Year: 2017
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 2: Figure S2. Effect of different flow-rate MACS on gametocyte infectivity. Number of oocysts per mosquito after membrane-feeding assay (MIDI cages). 1 600 µL of gametocyte-infected whole blood from starting material, fed directly. 2 9000 µL of gametocyte-infected whole blood from starting material added once over MACS column with 23G needle, eluted and reconstituted in 600 µL of uninfected blood before feed. 3 9000 µL of gametocyte-infected whole blood from starting material added once over MACS column with 21G needle, eluted and reconstituted in 600 µL of uninfected blood before feed. Vertical bars indicate mean with SEM.
AAC assessment for children with ASD (Lund et al., 2025)
Creators: name: Lund, Shelley K.
name: Quach, Wendy
name: Weissling, Kristy
name: McKelvey, Miechelle
Publisher: name: ASHA journals
Year: 2025
Subjects: classificationCode: 470101
subject: Communication studies
classificationCode: 470402
subject: Child language acquisition
classificationCode: 420110
subject: Speech pathology
classificationCode: 420318
subject: People with disability

description: Purpose: Previous research has shown that many speech-language pathologists (SLPs) lack confidence in conducting augmentative and alternative communication (AAC) evaluations. The AAC Clinical Assessment Project team developed a protocol to help guide SLPs to complete AAC assessments for children with autism spectrum disorder (ASD). This article describes the creation and content validation of the protocol.Method: Two studies were conducted. The first study developed the content of the protocol using information from previous research, observation of two AAC clinical specialists, and interviews with these specialists. In the second study, five specialists in AAC and ASD provided content validation by rating the appropriateness of each item in the protocol. Advisory group meetings were held with the specialists to discuss how to edit the protocol based on the survey results.Results: The final protocol contains a description of each area to be assessed, a rationale for assessing it, and suggested methods to conduct the assessment.Conclusions: The final version of the protocol has excellent content validity. Future research will evaluate the feasibility of using the protocol in clinical practice and whether using the protocol improves the clinical decision making of SLPs when planning AAC assessments.Supplemental Material S1. Draft autism protocol.Supplemental Material S2. Augmentative and alternative communication clinical assessment project (AAC CAP): Protocol for assessment of children with autism.Lund, S. K., Quach, W., Weissling, K., & McKelvey, M. (2025). Augmentative and alternative communication assessment for children on the autism spectrum: Protocol development and content validation. Language, Speech, and Hearing Services in Schools, 56(1), 1–16. https://doi.org/10.1044/2024_LSHSS-23-00127
AAC assessment for children with ASD (Lund et al., 2024)
Creators: name: Lund, Shelley K.
name: Quach, Wendy
name: Weissling, Kristy
name: McKelvey, Miechelle
Publisher: name: ASHA journals
Year: 2024
Subjects: classificationCode: 470101
subject: Communication studies
classificationCode: 470402
subject: Child language acquisition
classificationCode: 420110
subject: Speech pathology
classificationCode: 420318
subject: People with disability

description: Purpose: Previous research has shown that many speech-language pathologists (SLPs) lack confidence in conducting augmentative and alternative communication (AAC) evaluations. The AAC Clinical Assessment Project team developed a protocol to help guide SLPs to complete AAC assessments for children with autism spectrum disorder (ASD). This article describes the creation and content validation of the protocol. Method: Two studies were conducted. The first study developed the content of the protocol using information from previous research, observation of two AAC clinical specialists, and interviews with these specialists. In the second study, five specialists in AAC and ASD provided content validation by rating the appropriateness of each item in the protocol. Advisory group meetings were held with the specialists to discuss how to edit the protocol based on the survey results.Results: The final protocol contains a description of each area to be assessed, a rationale for assessing it, and suggested methods to conduct the assessment.Conclusions: The final version of the protocol has excellent content validity. Future research will evaluate the feasibility of using the protocol in clinical practice and whether using the protocol improves the clinical decision making of SLPs when planning AAC assessments.Supplemental Material S1. Draft autism protocol.Supplemental Material S2. Augmentative and alternative communication clinical assessment project (AAC CAP): Protocol for assessment of children with autism.Lund, S. K., Quach, W., Weissling, K., & McKelvey, M. (2024). Augmentative and alternative communication assessment for children on the autism spectrum: Protocol development and content validation. Language, Speech, and Hearing Services in Schools. Advance online publication. https://doi.org/10.1044/2024_LSHSS-23-00127
MOESM2 of Concentration of Plasmodium falciparum gametocytes in whole blood samples by magnetic cell sorting enhances parasite infection rates in mosquito feeding assays
Creators: name: Isaie Reuling
name: Stone, Will
name: Vegte-Bolmer, Marga De
name: Geert-Jan Gemert
name: Siebelink-Stoter, Rianne
name: Graumans, Wouter
name: Lanke, Kjerstin
name: Bousema, Teun
name: Sauerwein, Robert
Publisher: name: Figshare
Year: 2017
Subjects: subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 2: Figure S2. Effect of different flow-rate MACS on gametocyte infectivity. Number of oocysts per mosquito after membrane-feeding assay (MIDI cages). 1 600 µL of gametocyte-infected whole blood from starting material, fed directly. 2 9000 µL of gametocyte-infected whole blood from starting material added once over MACS column with 23G needle, eluted and reconstituted in 600 µL of uninfected blood before feed. 3 9000 µL of gametocyte-infected whole blood from starting material added once over MACS column with 21G needle, eluted and reconstituted in 600 µL of uninfected blood before feed. Vertical bars indicate mean with SEM.
Victoriana lugubris
Creators: name: Barahona-Segovia, Rodrigo M.
name: Riera, Pamela
name: Pañinao-Monsálvez, Laura
name: Guzmán, Vicente Valdés
name: Henríquez-Piskulich, Patricia
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Syrphidae
Victoriana
Victoriana lugubris

description: Victoriana lugubris (Philippi, 1865)
Figs 208–209
Baccha lugubris Philippi, 1865: 749
Baccha nigrifrons Bigot, 1883: 335
Type locality and data. “ Corral, Chile ” (T, A, MNHNCL).
Material examined. Valparaíso: 1♂, Quintero, 31.VIII.1967, Leg. L.E. Peña (MEUC); Metropolitana: 1♂, Peñalolen, no date, Leg. Montero (IEUMCE); Ñuble: 2♂, 1♀, Las Trancas, 12-15.IV.1966, Leg. NN (MEUC); 1♂, Puente Marchant, 2.I.1988, Leg. S. Roitman (MNHNCL); Biobío: 1♂, Concepción, 26.IV.1959, Leg. Jara (MZUC); 2♂, Playa del Burro, 16.I.2013, Leg. Rodrigo Barahona-Segovia (PCRBS); La Araucanía: 1♀, Cerro Ñielol, 2.I.1963, Leg. Files (MZUC); 1♂, Termas de Palguin 22.II.1966, Leg. J. Herrera (IEUMCE); 1♂, Termas de Río Blanco 23.II.1966, Leg. J. Herrera (IEUMCE); Los Ríos: 1♂, Santo Domingo, Valdivia, 8.XII.1987, Leg. Khramer (MNHNCL); 2♂, 1♀, Valdivia, 17.XII.1984, Leg. E. Krahmer (MEUC); Los Lagos: 1♂, Playa Maitén, Osorno, II.1960; J. Moroni (MNHNCL); 3♂, Pucatrihue, 1968, Leg. Salgado (MEUC); 1♀, Pucatrihue, 4–21-II- 1967, L.E. Peña (MEUC); 2♂, Centinela, 17.II.1956, Leg. O’herens (MZUC); 1♀, Puerto Octay, 17.II.1956, Leg. O.E.B. (MZUC); 1♂, 2♀, Frutillar, 3.II.1966, Leg. J. Silva & Valenzuela (MNHNCL); 2♂, Saltos de Petrohue, 30.III.1968, Leg. L.E. Peña (MEUC).
References. Philippi, 1865: 749 (desc.); Bigot, 1883: 335 (desc.); Williston, 1886: 314 (cat.); Reed, 1888: 299 (cat.); Kértesz, 1910: 161 (cat.); Shannon & Aubertin, 1933: 135, 136 (desc. & key); Sack, 1941: 101 (cat.); Stuardo, 1946: 124 (cat.); Fluke, 1956: 253 (cat.); Etcheverry, 1963: 19 (cat.); Thompson et al., 1976 (cat.); Camousseight, 2005: 94 (cat.); Mengual et al., 2018b: 12 (desc. group).
World distribution. Chile.
Chilean distribution. From Valparaíso to Los Lagos region (Fig. 200).
Altitudinal range. From coastal to precordillera ecosystems (0–1,600 m.a.s.l.).
Biology and notes. Victoriana lugubris has been observed in flowers of Hypochaeris sp. on the edge of native forests (Álvaro Zúñiga-Reinoso, CSP record), feeding on Mitraria coccinea Cav. (Gustavo Lezana, CSP record), Asteraceae flowers (Francisco Carreño, CSP record) or hovering in the middle of remaining fragments of native forest chosing flowers of Sarmienta scandens (J.D. Brandis ex Molina) Pers. (Rodrigo Barahona-Segovia pers. obs.).
Conservation status. LC; EOO = 236,119 km 2, AOO = 68 km 2, 15 subpopulations and 16 localities.
description: Published as part of Barahona-Segovia, Rodrigo M., Riera, Pamela, Pañinao-Monsálvez, Laura, Guzmán, Vicente Valdés & Henríquez-Piskulich, Patricia, 2021, Updating the knowledge of the flower flies (Diptera: Syrphidae) from Chile: Illustrated catalog, extinction risk and biological notes, pp. 1-178 in Zootaxa 4959 (1) on pages 149-150, DOI: 10.11646/zootaxa.4959.1.1, http://zenodo.org/record/4693464
Near-infrared spectroscopic characterisation of Gaia ultra-cool dwarf candidates; Spectral types and peculiarities
Creators: name: Ravinet, T.
name: Reylé, C.
name: Lagarde, N.
name: Burgasser, A.
name: Smart, R. L.
name: Moya, W. H.
name: Marocco, F.
name: Scholz, R. -D.
name: Cooper, W. J.
name: Cruz, K. L.
name: Fernández-Trincado, J. G.
name: Homeier, D.
name: Sarro, L. M.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Context: The local census of very low-mass stars and brown dwarfs is crucial to improving our understanding of the stellar-substellar transition and their formation history. These objects, known as ultra-cool dwarfs (UCDs), are essential targets for searches of potentially habitable planets. However, their detection poses a challenge because of their low luminosity. The Gaia survey has identified numerous new UCD candidates thanks to its large survey and precise astrometry.
 Aims: We aim to characterise 60 UCD candidates detected by Gaia in the solar neighbourhood with a spectroscopic follow-up to confirm that they are UCDs, as well as to identify peculiarities.
 Methods: We acquired the near-infrared (NIR) spectra of 60 objects using the SOFI spectrograph between 0.93 and 2.5 microns (R$\sim600$). We identified their spectral types using a template-matching method. Their binarity is studied using astrometry and spectral features.
 Results: We confirm that 60 objects in the sample have ultra-cool dwarf spectral types close to those expected from astrometry. Their NIR spectra reveal that seven objects could host an unresolved coolest companion and seven UCDs share the same proper motions as other stars. The characterisation of these UCDs is part of a coordinated effort to improve our understanding of the Solar neighbourhood.
description: Based on observations made with the ESO New Technology Telescope at the La Silla Observatory under programme 106.214E.001 and 108.22G4.001. Accepted by A&A on the 30/01/2024
Additional file 1: of To evaluate if increased supervision and support of South African Government health workersâ   home visits improves maternal and child outcomes: study protocol for a randomized control trial
Creators: name: Rotheram-Borus, Mary
name: Roux, Karl Le
name: Roux, Ingrid Le
name: Christodoulou, Joan
name: Laurenzi, Christina
name: Nokwanele Mbewu
name: Tomlinson, Mark
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: SPIRIT 2013 Checklist: Recommended items to address in a clinical trial protocol and related documents. (DOC 121Â kb)
Pheidole bilimeki
Creators: name: Longino, J. T.
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Pheidole
Pheidole bilimeki

description: Pheidole bilimeki
Pheidole bilimeki Mayr, 1870: 985. Lectotype major worker: Mexico (Bilimek) [NMW] (examined).
Pheidole rectiluma Wilson, 2003: 493, figs. Holotype major worker and associated paratype minor worker: Mexico, Tamaulipas, Sa. de Guatemala, Rancho del Cielo, 1070m, 23 Jul 1965 (Cornell Univ. Mexico Field Party) [MCZ] (examined). New synonymy.
Comments
The Pheidole bilimeki complex was reviewed by Longino and Cox (2009) (full synonymy presented there). On subsequent examination of the types of P. rectiluma, they were found to fall within the range of variation of typical P. bilimeki. The types of P. rectiluma match the typical widespread dark form, not the yellow form of southern Mexico.
description: Published as part of Longino, J. T., 2009, Additions to the taxonomy of New World Pheidole (Hymenoptera: Formicidae)., pp. 1-90 in Zootaxa 2181 on page 16
Rapidly convergent quantum Monte Carlo using a Chebyshev projector
Creators: name: Zhao, Zijun
name: Filip, Maria-Andreea
name: Thom, Alex J W
Publisher: name: arXiv
Year: 2024
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: The multi-reference coupled-cluster Monte Carlo (MR-CCMC) algorithm is a determinant-based quantum Monte Carlo (QMC) algorithm that is conceptually similar to Full Configuration Interaction QMC (FCIQMC). It has been shown to offer a balanced treatment of both static and dynamic correlation while retaining polynomial scaling, although application to large systems with significant strong correlation remained impractical. In this paper, we document recent algorithmic advances that enable rapid convergence and a more black-box approach to the multi-reference problem. These include a logarithmically scaling metric-tree based excitation acceptance algorithm to search for determinants connected to the reference space at the desired excitation level and a symmetry-screening procedure for the reference space. We show that, for moderately sized reference spaces, the new search algorithm brings about an approximately 8-fold acceleration of one MR-CCMC iteration, while the symmetry screening procedure reduces the number of active reference space determinants at essentially no loss of accuracy. We also introduce a stochastic implementation of an approximate wall projector, which is the infinite imaginary time limit of the exponential projector, using a truncated expansion of the wall function in Chebyshev polynomials. Notably, this wall-Chebyshev projector can be used to accelerate any projector-based QMC algorithm. We show that it requires significantly fewer applications of the Hamiltonian to achieve the same statistical convergence. We benchmark these acceleration methods on the beryllium and carbon dimers, using initiator FCIQMC and MR-CCMC with basis sets up to cc-pVQZ quality.
description: 12 pages, 13 figures
Asteroid
Creators: name: DAS, MALAY KUMAR
Publisher: name: zenodo
Year: 2022
Subjects: Asteroid
Bennu

description: Asteroids are rocky cosmic objects smaller than planets. There are about 1.1 to 1.9 million asteroids in our solar system. One of them is Bennu. September 11, 1999 LINEAR (Lincoln Near Earth Asteroid Research) Bennu was discovered in the near-earth asteroid survey.
Toxomerini Enderlein 1938
Creators: name: Barahona-Segovia, Rodrigo M.
name: Riera, Pamela
name: Pañinao-Monsálvez, Laura
name: Guzmán, Vicente Valdés
name: Henríquez-Piskulich, Patricia
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Syrphidae

description: Tribe Toxomerini Enderlein, 1938
Genus Toxomerus Macquart, 1855
Toxomerus Macquart, 1855: 112 (1855: 92). Type-species, T. notatus Macquart (orig. des.) = geminatus (Say). Refs. Hull, 1941b: 45–49 (key); Thompson, 1981: 66 (key); Thompson, 1999a: 326 (key); Metz & Thompson, 2001: 225–256 (rev. of larger spp.); Thompson & Thompson, 2006: 317–331 (rev. of Chilean spp.); Marinoni et al., 2007: 149, 150 (desc., key, illustrations); Borges & Couri, 2009: 1–72 (rev. of Brazilian spp.); Reemer, 2010: 190–194 (rev. of Surinam spp.); Mengual, 2011: 1–26 (rev. of Black–tie dress spp.).
Mesogramma Loew, 1866: 157 (1872 b: 31) (name preocc. by Stephens, 1850). Type-species, M. parvula Loew (Williston, 1887: 98).
Mesograpta Loew, 1872: 114 (1872 b: 290) (nom. nov. for Mesogramma Loew). Type-species, M. parvula Loew (aut.).
Mitrosphen Enderlein, 1938: 227. Type-species, Syrphus tibicen Wiedemann (orig. des.). Antiops Enderlein, 1938: 228. Typespecies, Mesograpta saphiridiceps Bigot (orig. des.).
description: Published as part of Barahona-Segovia, Rodrigo M., Riera, Pamela, Pañinao-Monsálvez, Laura, Guzmán, Vicente Valdés & Henríquez-Piskulich, Patricia, 2021, Updating the knowledge of the flower flies (Diptera: Syrphidae) from Chile: Illustrated catalog, extinction risk and biological notes, pp. 1-178 in Zootaxa 4959 (1) on page 151, DOI: 10.11646/zootaxa.4959.1.1, http://zenodo.org/record/4693464
Frustration-induced quantum criticality in Ni-doped CePdAl as revealed by the $μ$SR technique
Creators: name: Ishant, I.
name: Shiroka, T.
name: Stockert, O.
name: Fritsch, V.
name: Majumder, M.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: In CePdAl, the 4$f$ moments of cerium arrange to form a geometrically frustrated kagome lattice. Due to frustration, in addition to Kondo- and Ruderman-Kittel-Kasuya-Yosida interactions, this metallic system shows a long-range magnetic order (LRO) with a $T_{\rm N}$ of only 2.7\,K. Upon Ni doping at the Pd sites, $T_{\rm N}$ is further suppressed, to reach zero at a critical concentration $x_c \approx 0.15$. Here, by using muon-spin relaxation and rotation ($μ$SR), we investigate CePd${1-x}$Ni$_x$Al at a local level for five different Ni-concentrations, both above and below $x_c$. Like the parent CePdAl compound, for $x = 0.05$, we observe an incommensurate LRO, which turns into a quasi-static magnetic order for $x = 0.1$ and 0.14. More interestingly, away from $x_c$, for $x = 0.16$ and 0.18, we still observe a non-Fermi liquid regime, evidenced by a power-law divergence of the longitudinal relaxation at low temperatures. In this case, longitudinal field measurements exhibit a time-field scaling, indicative of a cooperative spin dynamics that persists for $x > x_c$. Furthermore, like the externally applied pressure, the chemical pressure induced by Ni doping suppresses the region below $T^*$, characterized by a spin-liquid like dynamical behavior. Our results suggest that the magnetic properties of CePdAl are similarly affected by the hydrostatic- and the chemical pressure. We also confirm that the unusual non-Fermi liquid regime (compared with conventional quantum critical systems) is due to the presence of frustration that persists up to the highest Ni concentrations.
description: 8 pages, 6 figures
Open Science for HPC
Creators: name: Auer, Susann
Publisher: name: Zenodo
Year: 2024
Subjects: Open Science
FAIR digital objects
metadata
research data management
HPC

description: Slide deck for training on Open Science for HPC-NRW on 2 December 2024. Contents include "What is Open Science?", Data life cycle and research data management, FAIR principles, metadata and documentation.
Transformer decoder learns from a pretrained protein language model to generate ligands with high affinity
Creators: name: Creanza, Teresa Maria
name: Alberga, Domenico
name: Patruno, Cosimo
name: Mangiatordi, Giuseppe Felice
name: Ancona, Nicola
Publisher: name: Zenodo
Year: 2025
Subjects: drug discovery, protein language models, generative models, transformers.

description: The drug discovery process can be significantly accelerated by using deep learn- ing methods to suggest molecules with drug-like features and, more importantly, that are good candidates to bind specific proteins of interest. We present a novel deep learning generative model, Prot2Drug, that learns to generate ligands binding specific targets leveraging i) the information carried by a pretrained protein language model and ii) the ability of transformers to capitalize the knowledge gathered from thousands of protein-ligand interactions. The embedding unveils the receipt to follow for de- signing molecules binding a given protein, and Prot2Drug translates such instructions by using the syntax of the molecular language generating novel compounds which are predicted to have favourable physicochemical properties and high affinity towards spe- cific targets. Moreover, Prot2Drug reproduced numerous known interactions between compounds and proteins used for generating them and suggested novel protein targets for known compounds indicating potential drug repurposing strategies. Remarkably, Prot2Drug allows the designing of promising ligands also in the case of protein targets with limited and/or no information about ligands and 3D structure.
Exotic tetraquarks at the HL-LHC with JETHAD: A high-energy viewpoint
Creators: name: Celiberto, Francesco Giovanni
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: High Energy Physics - Theory (hep-th)
subject: Nuclear Experiment (nucl-ex)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We review the semi-inclusive hadroproduction of a neutral hidden-flavor tetraquark with light and heavy quark flavor at the HL-LHC, accompanied by another heavy hadron or a light-flavored jet. We make use of the novel TQHL1.0 determinations of leading-twist fragmentation functions to describe the formation mechanism of a tetraquark state within the next-to-leading order perturbative QCD. This framework builds on the basis of a spin-physics inspired model, taken as a proxy for the lowest-scale input of the constituent heavy-quark fragmentation channel. Then, all parton-to-tetraquark fragmentation functions are consistently obtained via the above-threshold DGLAP evolution in a variable-flavor number scheme. We provide predictions for a series of differential distributions calculated by the hands of the JETHAD method well-adapted to NLL/NLO+ hybrid-factorization studies, where the resummation of next-to-leading energy logarithms and beyond is included in the collinear picture. We provide corroborating evidence that high-energy observables sensitive to semi-inclusive tetraquark emissions at the HL-LHC exhibit a fair stability under radiative corrections as well as MHOU studies. Our analysis constitutes a prime contact point between QCD resummations and the exotic matter.
description: 38 pages, 7 figures, 500 references. Invited review article
Pheidole boliviana
Creators: name: Longino, J. T.
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Pheidole
Pheidole boliviana

description: Pheidole boliviana
Pheidole boliviana Wilson, 2003: 380, figs. Holotype major worker and associated paratype minor worker: Bolivia, Santa Cruz: Las Gamas, P. N. Noel Kempff Mercado, 14°48'S 60°28'W, 700 m (P. S. Ward #12270), ex rotten log [MCZ] (examined).
Pheidole mincana Wilson, 2003: 457, figs. Holotype major and associated paratype minor worker: Colombia, Magdalena: Minca, 610 m, 26 Mar 1977 (C. Kugler), cafetal [MCZ] (examined). New synonymy.
Pheidole scitula Wilson, 2003: 505, figs. Holotype major worker and associated paratype minor worker: Costa Rica, Puntarenas Prov., Parque Nacional Corcovado, Llorona, 8°35'N 83°42'W, 2 Jan 1982 (Longino) [MCZ] (examined). New synonymy.
Geographic Range
Bolivia, Colombia, Costa Rica.
Biology
This species occurs in wet to moist forest habitats, from sea level to 800m elevation. Collections have been from second growth vegetation and a coffee plantation. Nests are in the low arboreal zone, within a meter or two of the ground but not in the leaf litter on the forest floor. Nests have been found in a small diameter dead stick and under loose bark of larger rotting trees.
Comments
Comparison of the types of P. boliviana, P. mincana, and P. scitula revealed no notable geographic variation. In fact, it is remarkable how similar the types from Bolivia and Costa Rica are.
description: Published as part of Longino, J. T., 2009, Additions to the taxonomy of New World Pheidole (Hymenoptera: Formicidae)., pp. 1-90 in Zootaxa 2181 on pages 16-17
Toxomerus dispar
Creators: name: Barahona-Segovia, Rodrigo M.
name: Riera, Pamela
name: Pañinao-Monsálvez, Laura
name: Guzmán, Vicente Valdés
name: Henríquez-Piskulich, Patricia
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Syrphidae
Toxomerus
Toxomerus dispar

description: Toxomerus dispar (Fabricius, 1794), doubtful record
Syrphus dispar Fabricius, 1794: 309
Scaeva dispar Fabricius, 1805: 253 *
Syrphus basilaris Wiedemann, 1830: 143
Mesograpta basilaris Williston, 1886: 313 *
Toxomerus basilaris Kertész, 1910: 144 *
Mesogramma basilare Curran, 1930a: 3 *
Type locality and data. “America meridionalis” restricted to Virgin Islands, St. Croix (Thompson, 1981: 86) (HT, ♂, ♀, UZMC).
Material examined. No specimens reviewed.
References. Fabricius, 1794: 309 (desc.); Williston, 1886: 312 (cat.); Goot, 1964: 215 (cat.); Boyes et al., 1971: 120 (cariotype); Thompson et al., 1976: 39 (cat.); Marinoni et al., 2004: 556 (ecological study); Thompson & Thompson, 2006: 321, figs 4–6 & 12a–c (desc.); Marinoni et al., 2007 (key & dist.); Borges & Couri, 2009: 29, figs 25–26 (desc.); Reemer, 2010: 191 (desc.); Mengual, 2011: 7 (key); Marín-Armijos et al., 2017: 180 (cat.).
World distribution. Brazil, Colombia, Costa Rica, Cuba, Ecuador, El Salvador, Guatemala, Hispaniola, Honduras, Jamaica, Less Antillas, Mexico, Puerto Rico, Suriname, Venezuela and Chile.
Chilean distribution. Unknown.
Altitudinal range. Unknown.
Biology and notes. Thompson et al. (1976) recorded Toxomerus dispar from Chile. Throughout this study we did not find museum specimens or collected specimens of this species. Thus, there is not enough evidence for the species to actually occur in Chile and it should be considered as a doubtful record.
Conservation status. Not evaluated because this species is a doubtful record for Chile.
description: Published as part of Barahona-Segovia, Rodrigo M., Riera, Pamela, Pañinao-Monsálvez, Laura, Guzmán, Vicente Valdés & Henríquez-Piskulich, Patricia, 2021, Updating the knowledge of the flower flies (Diptera: Syrphidae) from Chile: Illustrated catalog, extinction risk and biological notes, pp. 1-178 in Zootaxa 4959 (1) on page 152, DOI: 10.11646/zootaxa.4959.1.1, http://zenodo.org/record/4693464