cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
The physical map of the chromosome of a serogroup A strain of Neisseria meningitidis shows complex rearrangements relative to the chromosomes of the two mapped strains of the closely related species N. gonorrhoeae.
Creators: name: Cannon, J G
name: Dempsey, J A
name: Wallace, A B
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 1995

description: A physical map of the chromosome of N. meningitidis Z2491 (serogroup A, subgroup IV-1) has been constructed. Z2491 DNA was digested with NheI, SpeI, SgfI, PacI, BglII, or PmeI, resulting in a limited number of fragments that were resolved by contour-clamped homogeneous electric field (CHEF) electrophoresis. The estimated genome size for this strain was 2,226 kb. To construct the map, probes corresponding to single-copy genes or sequences were used on Southern blots of chromosomal DNA digested with the different mapping enzymes and subjected to CHEF electrophoresis. By determining which fragments from different digests hybridized to each specific probe, it was possible to walk back and forth between digests to form a circular macrorestriction map. The intervals between mapped restriction sites range from 10 to 143 kb in size. A total of 117 markers have been placed on the map; 75 represent identified genes, with the remaining markers defined by anonymous cloned fragments of neisserial DNA. Comparison of the arrangement of genetic loci in Z2491 with that in gonococcal strain FA1090, for which a physical map was previously constructed, revealed complex genomic rearrangements between the two strains. Although gene order is generally conserved over much of the chromosome, a region of approximately 500 kb shows translocation and/or inversion of multiple blocks of markers between the two strains. Even within the relatively conserved portions of the maps, several genetic markers are in different positions in Z2491 and FA1090.
Deep reinforcement learning for large-eddy simulation modeling in wall-bounded turbulence
Creators: name: Kim, Junhyuk
name: Kim, Hyojin
name: Kim, Jiyeon
name: Lee, Changhoon
Publisher: name: arXiv
Year: 2022
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Physical sciences

description: The development of a reliable subgrid-scale (SGS) model for large-eddy simulation (LES) is of great importance for many scientific and engineering applications. Recently, deep learning approaches have been tested for this purpose using high-fidelity data such as direct numerical simulation (DNS) in a supervised learning process. However, such data are generally not available in practice. Deep reinforcement learning (DRL) using only limited target statistics can be an alternative algorithm in which the training and testing of the model are conducted in the same LES environment. The DRL of turbulence modeling remains challenging owing to its chaotic nature, high dimensionality of the action space, and large computational cost. In the present study, we propose a physics-constrained DRL framework that can develop a deep neural network (DNN)-based SGS model for the LES of turbulent channel flow. The DRL models that produce the SGS stress were trained based on the local gradient of the filtered velocities. The developed SGS model automatically satisfies the reflectional invariance and wall boundary conditions without an extra training process so that DRL can quickly find the optimal policy. Furthermore, direct accumulation of reward, spatially and temporally correlated exploration, and the pre-training process are applied for the efficient and effective learning. In various environments, our DRL could discover SGS models that produce the viscous and Reynolds stress statistics perfectly consistent with the filtered DNS. By comparing various statistics obtained by the trained models and conventional SGS models, we present a possible interpretation of better performance of the DRL model.
Роль пристава российских духовных миссий В. К. Игумнова в истории российско-китайских отношений второй половины ХУШ века (по архивным материалам)
Creators: name: Саркисова Галина Ивановна
Publisher: name: Китай в мировой и региональной политике. История и современность
Year: 2017
Subjects: ВАСИЛИЙ ИГУМНОВ
АЛЕКСАНДР ИГУМНОВ
РОССИЙСКАЯ ДУХОВНАЯ МИССИЯ В КИТАЕ
ПРИСТАВ
ПУТЕВОЙ ЖУРНАЛ
ИЕЗУИТЫ

description: Статья на основе архивных материалов раскрывает роль пограничного комиссара, пристава российских духовных миссий в Китае и переводчика монгольского языка В.К. Игумнова в истории русско-китайских отношений второй половины XVIII в.
Replication of Landmarked Orthodontic Bracket Positions from Patient  Intraoral Scans onto Laboratory Orthodontic Simulator
Creators: Subramanian, Arya
de Wet, Robyn
Lagravere, Manuel O.
Major, Paul W.
Romanyk, Dan L.
Publisher: name: University of Alberta Library
Year: 2022

Conference abstract. Part of the Proceedings of the Canadian Society for Mechanical Engineering International Congress 2022.
Destroyed quantum Hall effect in graphene with [0001] tilt grain boundaries
Creators: name: Bergvall, Anders
name: Carlsson, Johan M.
name: Lofwander, Tomas
Publisher: name: arXiv
Year: 2014
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: The reason why the half-integer quantum Hall effect (QHE) is suppressed in graphene grown by chemical vapor deposition (CVD) is unclear. We propose that it might be connected to extended defects in the material and present results for the quantum Hall effect in graphene with [0001] tilt grain boundaries connecting opposite sides of Hall bar devices. Such grain boundaries contain 5-7 ring complexes that host defect states that hybridize to form bands with varying degree of metallicity depending on grain boundary defect density. In a magnetic field, edge states on opposite sides of the Hall bar can be connected by the defect states along the grain boundary. This destroys Hall resistance quantization and leads to non-zero longitudinal resistance. Anderson disorder can partly recover quantization, where current instead flows along returning paths along the grain boundary depending on defect density in the grain boundary and on disorder strength. Since grain sizes in graphene made by chemical vapor deposition are usually small, this may help explain why the quantum Hall effect is usually poorly developed in devices made of this material.
description: 5 pages, 4 figures
Binding and surface exposure characteristics of the gonococcal transferrin receptor are dependent on both transferrin-binding proteins.
Creators: name: Cornelissen, C N
name: Sparling, P F
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 1996

description: Neisseria gonorrhoeae is capable of iron utilization from human transferrin in a receptor-mediated event. Transferrin-binding protein 1 (Tbp1) and Tbp2 have been implicated in transferrin receptor function, but their specific roles in transferrin binding and transferrin iron utilization have not yet been defined. We utilized specific gonococcal mutants lacking Tbp1 or Tbp2 to assess the relative transferrin-binding properties of each protein independently of the other. The apparent affinities of the wild-type transferrin receptor and of Tbp1 and Tbp2 individually were much higher than previously estimated for the gonococcal receptor and similar to the estimates for the mammalian transferrin receptor. The binding parameters of both of the mutants were distinct from those of the parent, which expressed two transferrin-binding sites. Tbp2 discriminated between ferrated transferrin and apotransferrin, while Tbp1 did not. Results of transferrin-binding affinity purification, and protease accessibility experiments were consistent with the hypothesis that Tbp1 and Tbp2 interact in the wild-type strain, although both proteins were capable of binding to transferrin independently when separated in the mutants. The presence of Tbp1 partially protected Tbp2 from trypsin proteolysis, and Tbp2 also protected Tbp1 from trypsin exposure. Addition of transferrin to wild-type but not mutant cells protected Tbp1 from trypsin but increased the trypsin susceptibility of Tbp2. These observations indicate that Tbp1 and Tbp2 function together in the wild-type strain to evoke binding conformations that are distinct from those expressed by the mutants lacking either protein.
GlbN (cyanoglobin) is a peripheral membrane protein that is restricted to certain Nostoc spp.
Creators: name: Böger, P
name: Hill, D R
name: Potts, M
name: Ernst, A
name: Brass, S
name: Thorsteinsson, M V
name: Bassam, D
name: Paerl, H
name: Belbin, T J
name: Mulligan, M E
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 1996

description: The glbN gene of Nostoc commune UTEX 584 is juxtaposed to nifU and nifH, and it encodes a 12-kDa monomeric hemoglobin that binds oxygen with high affinity. In N. commune UTEX 584, maximum accumulation of GlbN occurred in both the heterocysts and vegetative cells of nitrogen-fixing cultures when the rate of oxygen evolution was repressed to less than 25 micromol of O2 mg of chlorophyll a(-1) h(-1). Accumulation of GlbN coincided with maximum synthesis of NifH and ferredoxin NADP+ oxidoreductase (PetH or FNR). A total of 41 strains of cyanobacteria, including 40 nitrogen fixers and representing 16 genera within all five sections of the cyanobacteria were screened for the presence of glbN or GlbN. glbN was present in five Nostoc strains in a single copy. Genomic DNAs from 11 other Nostoc and Anabaena strains, including Anabaena sp. strain PCC 7120, provided no hybridization signals with a glbN probe. A constitutively expressed, 18-kDa protein which cross-reacted strongly with GlbN antibodies was detected in four Anabaena and Nostoc strains and in Trichodesmium thiebautii. The nifU-nifH intergenic region of Nostoc sp. strain MUN 8820 was sequenced (1,229 bp) and was approximately 95% identical to the equivalent region in N. commune UTEX 584. Each strand of the DNA from the nifU-nifH intergenic regions of both strains has the potential to fold into secondary structures in which more than 50% of the bases are internally paired. Mobility shift assays confirmed that NtcA (BifA) bound a site in the nifU-glbN intergenic region of N. commune UTEX 584 approximately 100 bases upstream from the translation initiation site of glbN. This site showed extensive sequence similarity with the promoter region of glnA from Synechococcus sp. strain PCC 7942. In vivo, GlbN had a specific and prominent subcellular location around the periphery of the cytosolic face of the cell membrane, and the protein was found solely in the soluble fraction of cell extracts. Our hypothesis is that GlbN scavenges oxygen for and is a component of a membrane-associated microaerobically induced terminal cytochrome oxidase.
Interruption of the gpxA gene increases the sensitivity of Neisseria meningitidis to paraquat.
Creators: name: Sparling, P F
name: Moore, T D
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 1996

description: Antioxidant enzymes are thought to be important for the survival of pathogenic Neisseria species. We have further characterized the glutathione peroxidase homolog gene (gpxA), which we recently isolated from Neisseria meningitidis FAM20 (T.D.E. Moore and P.F. Sparling, Infect. Immun. 63:1603-1607, 1995). GpxA was found to be produced constitutively in vivo. An isogenic, omega insertion mutant in the gpxA gene was constructed and characterized. The gpxA insertion mutant was much more sensitive to the oxidative stress caused by paraquat and slightly more sensitive to hydrogen peroxide. This is the first demonstration of a phenotype arising from a mutation of a glutathione peroxidase homolog gene in a prokaryotic organism. Protection of the cell by GpxA from the effects of oxidative stress caused by aerobic metabolism may contribute to the ability of Neisseria meningitidis to cause disease in the human host.
Conserved non-Noether charge in general relativity: Physical definition vs. Noether's 2nd theorem
Creators: name: Aoki, Sinya
name: Onogi, Tetsuya
Publisher: name: arXiv
Year: 2022
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: In this paper, we make a close comparison of a covariant definition of an energy/entropy in general relativity, recently proposed by a collaboration including the present authors, with existing definitions of energies such as the one from the pseudo-tensor and the quasi-local energy. We show that existing definitions of energies in general relativity are conserved charges from the Noether's 2nd theorem for the general coordinate transformation, whose conservations are merely identities implied by the local symmetry and always hold without using equations of motion. Thus none of existing definitions in general relativity reflects the dynamical properties of the system, need for a physical definition of an energy. In contrast, our new definition of the energy/entropy in general relativity is generically a conserved non-Noether charge and gives physically sensible results for various cases such as the black hole mass, the gravitational collapse, and the expanding universe, while existing definitions sometimes lead to unphysical ones including zero and infinity. We conclude that our proposal is more physical than existing definitions of energies. Our proposal makes it possible to define almost uniquely the covariant and conserved energy/entropy in general relativity, which brings some implications to future investigations.
description: 27 pages, 2 figures
Classical irregular block, N=2 pure gauge theory and Mathieu equation
Creators: name: Piatek, Marcin
name: Pietrykowski, Artur R.
Publisher: name: arXiv
Year: 2014
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Combining the semiclassical/Nekrasov-Shatashvili limit of the AGT conjecture and the Bethe/gauge correspondence results in a triple correspondence which identifies classical conformal blocks with twisted superpotentials and then with Yang-Yang functions. In this paper the triple correspondence is studied in the simplest, yet not completely understood case of pure SU(2) super-Yang-Mills gauge theory. A missing element of that correspondence is identified with the classical irregular block. Explicit tests provide a convincing evidence that such a function exists. In particular, it has been shown that the classical irregular block can be recovered from classical blocks on the torus and sphere in suitably defined decoupling limits of classical external conformal weights. These limits are "classical analogues" of known decoupling limits for corresponding quantum blocks. An exact correspondence between the classical irregular block and the SU(2) gauge theory twisted superpotential has been obtained as a result of another consistency check. The latter determines the spectrum of the 2-particle periodic Toda (sin-Gordon) Hamiltonian in accord with the Bethe/gauge correspondence. An analogue of this statement is found entirely within 2d CFT. Namely, considering the classical limit of the null vector decoupling equation for the degenerate irregular block a celebrated Mathieu's equation is obtained with an eigenvalue determined by the classical irregular block. As it has been checked this result reproduces a well known weak coupling expansion of Mathieu's eigenvalue. Finally, yet another new formulae for Mathieu's eigenvalue relating the latter to a solution of certain Bethe-like equation are found.
description: 47 pages, 3 figures
Benfordness of the Generalized Gamma Distribution
Creators: name: Bi, Zelong
name: Durmić, Irfan
name: Miller, Steven J.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Probability (math.PR)
subject: FOS: Mathematics

description: The generalized gamma distribution shows up in many problems related to engineering, hydrology as well as survival analysis. Earlier work has been done that estimated the deviation of the exponential and the Weibull distribution from Benford's Law. We give a mathematical explanation for the Benfordness of the generalized gamma distribution and present a measure for the deviation of the generalized gamma distribution from the Benford distribution.
Isolation and analysis of a fur mutant of Neisseria gonorrhoeae.
Creators: name: Thomas, C E
name: Sparling, P F
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 1996

description: The pathogenic Neisseria spp. produce a number of iron-regulated gene products that are thought to be important in virulence. Iron-responsive regulation of these gene products has been attributed to the presence in Neisseria spp. of the Fur (ferric uptake regulation) protein. Evidence for the role of Fur in neisserial iron regulation has been indirect because of the inability to make fur null mutations. To circumvent this problem, we used manganese selection to isolate missense mutations of Neisseria gonorrhoeae fur. We show that a mutation in gonococcal fur resulted in reduced modulation of expression of four well-studied iron-repressed genes and affected the iron regulation of a broad range of other genes as judged by two-dimensional polyacrylamide gel electrophoresis (PAGE). All 15 of the iron-repressed spots observed by two-dimensional PAGE were at least partially derepressed in the fur mutant, and 17 of the 45 iron-induced spots were affected by the fur mutation. Thus, Fur plays a central role in regulation of iron-repressed gonococcal genes and appears to be involved in regulation of many iron-induced genes. The size and complexity of the iron regulons in N. gonorrhoeae are much greater than previously recognized.
Studying the dwarf galaxies in nearby groups of galaxies: spectroscopic and photometric data
Creators: name: Hopp, U.
name: Vennik, J.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Galaxy evolution by interaction driven transformation is probably highly efficient in groups of galaxies. Dwarf galaxies with their shallow potential are expected to reflect the interaction most prominently in their observable structure. The major aim of this series of papers is to establish a data base which allows to study the impact of group interaction onto the morphology and star-forming properties of dwarf galaxies. Firstly, we present our selection rules for target groups and the morphological selection method of target dwarf member candidates. Secondly, the spectroscopic follow-up observations with the HET are present. Thirdly, we applied own reduction methods based on adaptive filtering to derive surface photometry of the candidates. The spectroscopic follow-up indicate a dwarf identification success rate of roughly 55%, and a group member success rate of about 33%. A total of 17 new low surface brightness members is presented. For all candidates, total magnitudes, colours, and light distribution parameters are derived and discussed in the context of scaling relations. We point out short comings of the SDSS standard pipeline for surface photometry for these dim objects. We conclude that our selection strategy is rather efficient to obtain a sample of dim, low surface brightness members of groups of galaxies within the Virgo super-cluster. The photometric scaling relation in these X-ray dim, rather isolated groups does not significantly differ from those of the galaxies within the Local Volume.
description: 24 pages, 12 figures, 8 tables, accepted for publication in Astronomische Nachrichten
Requirement for genes with homology to ABC transport systems for attachment and virulence of Agrobacterium tumefaciens.
Creators: name: Matthysse, A G
name: Yarnall, H A
name: Young, N
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 1996

description: Transposon mutants of Agrobacterium tumefaciens which were avirulent and unable to attach to plant cells were isolated and described previously. A clone from a library of Agrobacterium tumefaciens DNA which was able to complement these chromosomal att mutants was identified. Tn3HoHo1 insertions in this clone were made and used to replace the wild-type genes in the bacterial chromosome by marker exchange. The resulting mutants were avirulent and showed either no or very much reduced attachment to carrot suspension culture cells. We sequenced a 10-kb region of this clone and found a putative operon containing nine open reading frames (ORFs) (attA1A2BCDEFGH). The second and third ORFs (attA2 and attB) showed homology to genes encoding the membrane-spanning proteins (potB and potH; potC and potI) of periplasmic binding protein-dependent (ABC) transport systems from gram-negative bacteria. The homology was strongest to proteins involved in the transport of spermidine and putrescine. The first and fifth ORFs (attA1 and attE) showed homology to the genes encoding ATP-binding proteins of these systems including potA, potG, and cysT from Escherichia coli; occP from A. tumefaciens; cysA from Synechococcus spp.; and ORF-C from an operon involved in the attachment of Campylobacte jejuni. The ability of mutants in these att genes to bind to host cells was restored by addition of conditioned medium during incubation of the bacteria with host cells.
Attachment of Agrobacterium tumefaciens to carrot cells and Arabidopsis wound sites is correlated with the presence of a cell-associated, acidic polysaccharide.
Creators: name: Matthysse, A G
name: Reuhs, B L
name: Kim, J S
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 1997

description: An early step in crown gall tumor formation involves the attachment of Agrobacterium tumefaciens to host plant cells. A. tumefaciens C58::A205 (C58 attR) is a Tn3HoHo1 insertion mutant that was found to be avirulent on Bryophyllum daigremontiana and unable to attach to carrot suspension cells. The mutation mapped to an open reading frame encoding a putative protein of 247 amino acids which has significant homology to transacetylases from many bacteria. Biochemical analysis of polysaccharide extracts from wild-type strain C58 and the C58::A205 mutant showed that the latter was deficient in the production of a cell-associated polysaccharide. Anion-exchange chromatography followed by 1H nuclear magnetic resonance and gas chromatography-mass spectrometry analyses showed that the polysaccharide produced by strain C58 was an acetylated, acidic polysaccharide and that the polysaccharide preparation contained three sugars: glucose, glucosamine, and an unidentified deoxy-sugar. Application of the polysaccharide preparation from strain C58 to carrot suspension cells prior to inoculation with the bacteria effectively inhibited attachment of the bacteria to the carrot cells, whereas an identical preparation from strain C58::A205 had no inhibitory effect and did not contain the acidic polysaccharide. Similarly, preincubation of Arabidopsis thaliana root segments with the polysaccharide prevented attachment of strain C58 to that plant. This indicates that the acidic polysaccharide may play a role in the attachment of A. tumefaciens to host soma plant cells.
Two-dimensional C/BN core/shell structures
Creators: name: Cahangirov, S.
name: Ciraci, S.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: Single layer core/shell structures consisting of graphene as core and hexagonal boron nitride as shell are studied using first-principles plane wave method within density functional theory. Electronic energy level structure is analysed as a function of the size of both core and shell. It is found that the confinement of electrons in two dimensional graphene quantum dot is reduced by the presence of boron nitride shell. The energy gap is determined by the graphene states. Comparison of round, hexagonal, rectangular and triangular core/shell structures reveals that their electronic and magnetic states are strongly affected by their geometrical shapes. The energy level structure, energy gap and magnetic states can be modified by external charging. The core part acts as a two-dimensional quantum dot for both electrons and holes. The capacity of extra electron intake of these quantum dots is shown to be limited by the Coulomb blockade in two-dimension.
Charmed bottom baryon spectroscopy from lattice QCD
Creators: name: Brown, Zachary S.
name: Detmold, William
name: Meinel, Stefan
name: Orginos, Kostas
Publisher: name: arXiv
Year: 2014
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We calculate the masses of baryons containing one, two, or three heavy quarks using lattice QCD. We consider all possible combinations of charm and bottom quarks, and compute a total of 36 different states with $J^P = \frac12^+$ and $J^P = \frac32^+$. We use domain-wall fermions for the up, down, and strange quarks, a relativistic heavy-quark action for the charm quarks, and nonrelativistic QCD for the bottom quarks. Our analysis includes results from two different lattice spacings and seven different pion masses. We perform extrapolations of the baryon masses to the continuum limit and to the physical pion mass using $SU(4|2)$ heavy-hadron chiral perturbation theory including $1/m_Q$ and finite-volume effects. For the 14 singly heavy baryons that have already been observed, our results agree with the experimental values within the uncertainties. We compare our predictions for the hitherto unobserved states with other lattice calculations and quark-model studies.
description: 41 pages, 19 figures
GHz-Pulsed Source of Entangled Photons for Reconfigurable Quantum Networks
Creators: name: Ponce, Meritxell Cabrejo
name: Muniz, André Luiz Marques
name: Ancsin, Philippe
name: Spiess, Christopher
name: Steinlechner, Fabian
Publisher: name: arXiv
Year: 2022
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Entanglement is a universal resource in quantum networks, yet entangled photon sources are typically custom-made for a specific use case. Versatility, both in terms of state modulation and tunability of the temporal properties of the photons, is the key to flexible network architectures and cryptographic primitives that go beyond quantum key distribution. Here, we report on a flexible source design that produces high-quality entanglement in continuous-wave and GHz-rate-pulsed operation modes. Utilizing off-the-shelf optical components, our approach uses a fiber-based Sagnac loop to generate polarization-entangled photons at telecom wavelength with high efficiency and fidelities above 0.99. Phase modulation up to GHz before entangled state generation is also possible for fast entangled state switching. We show phase modulation at 100 MHz with an average fidelity of 0.95. Furthermore, the source 60 nm spectral bandwidth is entirely compatible with fully reconfigurable wavelength-multiplexed quantum networks.
description: 10 pages, 5 figures
The sintering behavior of close packed spheres
Creators: name: Bjørk, R.
name: Tikare, V.
name: Frandsen, H. L.
name: Pryds, N.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: The sintering behavior of close packed spheres is investigated using a numerical model. The investigated systems are the body centered cubic (BCC), face centered cubic (FCC) and hexagonal closed packed spheres (HCP). The sintering behavior is found to be ideal with no grain growth until full density is reached for all systems. During sintering the grains change shape from spherical to tetrakaidecahedron, similar to the geometry analyzed by Coble (R. L. Coble, J. Appl. Phys. 32 (1961) 787).
description: 4 pages, 3 figures
Gravitational lensing effects of supermassive black holes in cluster environments
Creators: name: Mahler, Guillaume
name: Natarajan, Priyamvada
name: Jauzac, Mathilde
name: Richard, Johan
Publisher: name: arXiv
Year: 2022
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: This study explores the gravitational lensing effects of supermassive black holes (SMBHs) in galaxy clusters. While the presence of central SMBHs in galaxies is firmly established, recent work from high-resolution simulations predict the existence of an additional population of wandering SMBHs. Though the masses of these SMBHs are a minor perturbation on the larger scale and individual galaxy scale dark matter components in the cluster, they can impact statistical lensing properties and individual lensed image configurations. Probing for these potentially observable signatures, we find that SMBHs imprint detectable signatures in rare, higher-order strong lensing image configurations although they do not manifest any statistically significant detectable evidence in either the magnification distribution or the integrated shear profile. Investigating specific lensed image geometries, we report that a massive, near point-like, potential of an SMBH causes the following detectable effects: (i) image splitting leading to the generation of extra images; (ii) positional and magnification asymmetries in multiply imaged systems; and (iii) the apparent disappearance of a lensed counter-image. Of these, image splitting inside the cluster tangential critical curve, is the most prevalent notable observational signature. We demonstrate these possibilities in two cases of observed giant arcs in $SGAS\,J003341.5+024217$ and $RX\,J1347.5-1145$, wherein specific image configurations seen can be reproduced with SMBHs. Future observations with high-resolution instrumentation (e.g. MAVIS-Very Large Telescope, MICADO-Extremely Large Telescope, and the upgraded ngVLA, along with data from the \textit{Euclid} \& \textit{Nancy Grace Roman} Space Telescopes and the Rubin LSST Observatory are likely to allow us to probe these unique yet rare SMBHs lensing signatures.
description: 12 pages, 12 figures, submitted to MNRAS. For associated online animation, see https://sites.google.com/view/guillaume-mahler-astronomer/paper-animation
Influence of Gd-rich precipitates on the martensitic transformation, magnetocaloric effect and mechanical properties of Ni-Mn-In Heusler alloys -- A comparative study
Creators: name: Scheibel, Franziska
name: Liu, Wei
name: Pfeuffer, Lukas
name: Shayanfar, Navid
name: Taubel, Andreas
name: Skokov, Konstantin P.
name: Riegg, Stefan
name: Wu, Yuye
name: Gutfleisch, Oliver
Publisher: name: arXiv
Year: 2023
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Applied Physics (physics.app-ph)
subject: FOS: Physical sciences

description: A multi-stimuli cooling cycle can be used to increase the cyclic caloric performance of multicaloric materials like Ni-Mn-In Heusler alloys. However, the use of a uniaxial compressive stress as an additional external stimulus to a magnetic field requires good mechanical stability. Improvement of mechanical stability and strength by doping has been shown in several studies. However, doping is always accompanied by grain refinement and a change in transition temperature. This raises the question of the extent to which mechanical strength is related to grain refinement, transition temperature, or precipitates. This study shows a direct comparison between a single-phase Ni-Mn-Sn and a two-phase Gd-doped Ni-Mn-In alloy with the same transition temperature and grain size. It is shown that the excellent magnetocaloric properties of the Ni-Mn-In matrix are maintained with doping. The isothermal entropy change and adiabatic temperature change are reduced by only 15% in the two-phase Ni-Mn-In-Heusler alloy compared to the single-phase alloy, which is resulting from a slight increase in thermal hysteresis and the width of the transition. Due to the same grain size and transition temperature, this effect can be directly related to the precipitates. The introduction of Gd precipitates leads to a 100% improvement in mechanical strength, which is significantly lower than the improvement observed for Ni-Mn-In alloys with grain refinement and Gd precipitates. This reveals that a significant contribution to the improved mechanical stability in Gd-doped Heusler alloys is related to grain refinement.
description: Keywords: metal matrix composites, magnetocaloric, magneto-structural phase transitions, microstructure, mechanical properties, Heusler alloy
Cloning and characterization of the ponA gene encoding penicillin-binding protein 1 from Neisseria gonorrhoeae and Neisseria meningitidis.
Creators: name: Nicholas, R A
name: Ropp, P A
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 1997

description: The ponA gene encoding penicillin-binding protein 1 (PBP 1) from Neisseria gonorrhoeae was cloned by a reverse genetic approach. PBP 1 was purified from solubilized membranes of penicillin-susceptible strain FA19 by covalent ampicillin affinity chromatography and used to obtain an NH2-terminal amino acid sequence. A degenerate oligonucleotide based on this protein sequence and a highly degenerate oligonucleotide based on a conserved amino acid motif found in all class A high-molecular-mass PBPs were used to isolate the PBP 1 gene (ponA). The ponA gene encodes a protein containing all of the conserved sequence motifs found in class A PBPs, and expression of the gene in Escherichia coli resulted in the appearance of a new PBP that comigrated with PBP 1 purified from N. gonorrhoeae. A comparison of the gonococcal ponA gene to its homolog isolated from Neisseria meningitidis revealed a high degree of identity between the two gene products, with the greatest variability found at the carboxy terminus of the two deduced PBP 1 protein sequences.
Wavelength-resolved Reverberation Mapping of quasar CTSC30.10: Dissecting MgII and FeII emission regions
Creators: name: Prince, Raj
name: Zajaček, Michal
name: Czerny, Bożena
name: Trzcionkowski, P.
name: Bronikowski, M.
name: Figaredo, C. S.
name: Panda, S.
name: Martinez-Aldama, M. L.
name: Hryniewicz, K.
name: Jaiswal, V. K.
name: Śniegowska, M.
name: Naddaf, M.
name: Bilicki, M.
name: Haas, M.
name: Sarna, M. J.
name: Karas, V.
name: Olejak, A.
name: Przyłuski, R.
name: Rałowski, M.
name: Udalski, A.
name: Sefako, R. R.
name: Genade, A.
name: Worters, H. L.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: We present the results of the reverberation monitoring aimed at MgII broad line and FeII pseudocontinuum for the luminous quasar CTS C30.10 (z = 0.90052) with the Southern African Large Telescope covering the years 2012-2021. We aimed at disentangling the MgII and UV FeII variability and the first measurement of UV FeII time delay for a distant quasar. We used several methods for time-delay measurements and determined both FeII and MgII time delays as well as performed a wavelength-resolved time delay study for a combination of MgII and FeII in the 2700 - 2900 Årestframe wavelength range. We obtain the time delay for MgII of $275.5^{+12.4}_{-19.5}$ days in the rest frame, while for FeII we have two possible solutions of $270.0^{+13.8}_{-25.3}$ days and $180.3^{+26.6}_{-30.0}$ in the rest frame. Combining this result with the old measurement of FeII UV time delay for NGC 5548 we discuss for the first time the radius-luminosity relation for UV FeII with the slope consistent with $0.5$ within uncertainties. Since FeII time delay has a shorter time-delay component but lines are narrower than MgII, we propose that the line delay measurement is biased towards the BLR part facing the observer, with the bulk of the Fe II emission may arise from the more distant BLR region, one that is shielded from the observer.
description: 22 pages, 19 Figures, 6 Tables, Submitted to Astronomy and Astrophysics, Comments are welcome
A Calculus for Magnetic Pseudodifferential Super Operators
Creators: name: Lee, Gihyun
name: Lein, Max
Publisher: name: arXiv
Year: 2022
Subjects: subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences
subject: 35S05, 47C15, 47L80, 81R60

description: This work develops a magnetic pseudodifferential calculus for super operators OpA(F); these map operators onto operators (as opposed to Lp functions onto Lq functions). Here, F could be a tempered distribution or a Hörmander symbol. An important example is Liouville super operators defined in terms of a magnetic pseudodifferential operator. Our work combines ideas from magnetic Weyl calculus developed in [MP04, IMP07, Lei11] and the pseudodifferential calculus on the non-commutative torus from [HLP18a, HLP18b]. Thus, our calculus is inherently gauge-covariant, which means all essential properties of OpA(F) are determined by properties of the magnetic field B = dA rather than the vector potential A. There are conceptual differences to ordinary pseudodifferential theory. For example, in addition to an analog of the (magnetic) Weyl product that emulates the composition of two magnetic pseudodifferential super operators on the level of functions, the so-called semi-super product describes the action of a pseudodifferential super operator on a pseudodifferential operator.
description: 79 pages, 1 figure
The ideal dimensions of a Halbach cylinder of finite length
Creators: name: Bjørk, R.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: FOS: Physical sciences

description: In this paper the smallest or optimal dimensions of a Halbach cylinder of a finite length for a given sample volume and desired flux density are determined using numerical modeling and parameter variation. A sample volume that is centered in and shaped as the Halbach cylinder bore but with a possible shorter length is considered. The external radius and the length of the Halbach cylinder with the smallest possible dimensions are found as a function of a desired internal radius, length of the sample volume and mean flux density. It is shown that the optimal ratio between the outer and inner radius of the Halbach cylinder does not depend on the length of the sample volume. Finally, the efficiency of a finite length Halbach cylinder is considered and compared with the case of a cylinder of infinite length. The most efficient dimensions for a Halbach cylinder are found and it is shown that the efficiency increases slowly with the length of the cylinder.
Almost-$C^1$ splines: Biquadratic splines on unstructured quadrilateral meshes and their application to fourth order problems
Creators: name: Takacs, Thomas
name: Toshniwal, Deepesh
Publisher: name: arXiv
Year: 2022
Subjects: subject: Numerical Analysis (math.NA)
subject: FOS: Mathematics

description: Isogeometric Analysis generalizes classical finite element analysis and intends to integrate it with the field of Computer-Aided Design. A central problem in achieving this objective is the reconstruction of analysis-suitable models from Computer-Aided Design models, which is in general a non-trivial and time-consuming task. In this article, we present a novel spline construction, that enables model reconstruction as well as simulation of high-order PDEs on the reconstructed models. The proposed almost-$C^1$ are biquadratic splines on fully unstructured quadrilateral meshes (without restrictions on placements or number of extraordinary vertices). They are $C^1$ smooth almost everywhere, that is, at all vertices and across most edges, and in addition almost (i.e. approximately) $C^1$ smooth across all other edges. Thus, the splines form $H^2$-nonconforming analysis-suitable discretization spaces. This is the lowest-degree unstructured spline construction that can be used to solve fourth-order problems. The associated spline basis is non-singular and has several B-spline-like properties (e.g., partition of unity, non-negativity, local support), the almost-$C^1$ splines are described in an explicit Bézier-extraction-based framework that can be easily implemented. Numerical tests suggest that the basis is well-conditioned and exhibits optimal approximation behavior.
MPEC 2024-R332 : 2024 RR16
Creators: name: Minor Planet Center Staff
Publisher: name: The Minor Planet Center
Year: 2024
Subjects: subject: Small Solar System bodies
valueUri: http://astrothesaurus.org/uat/1469
subject: 2024 RR16

description: The Minor Planet Electronic Circulars contain information on unusual minor planets, routine data on comets and natural satellites, and occasional editorial announcements.  They are published on behalf of Division F of the International Astronomical Union by the Minor Planet Center, Smithsonian Astrophysical Observatory, Cambridge, MA 02138, U.S.A.
Promoter-specific repression of fimB expression by the Escherichia coli nucleoid-associated protein H-NS.
Creators: name: Lelivelt, M J
name: Donato, G M
name: Kawula, T H
Publisher: name: The University of North Carolina at Chapel Hill University Libraries
Year: 1997

description: The H-NS protein is a major component of the Escherichia coli nucleoid. Mutations in hns, the gene encoding H-NS, have pleiotropic effects on the cell altering both the expression of a variety of unlinked genes and the inversion rate of the DNA element containing the fimA promoter. We investigated the interaction between H-NS and fimB, the gene encoding the bidirectional recombinase that catalyzes fimA promoter flipping. In beta-galactosidase assays, we found that fimB expression increased approximately fivefold in an hns2-tetR insertion mutant. In gel mobility shift assays with purified H-NS, we have also shown that H-NS bound directly and cooperatively to the fimB promoter region with greater affinity than for any other known H-NS-regulated gene. Furthermore, this high-affinity interaction resulted in a promoter-specific inhibition of fimB transcription. The addition of purified H-NS to an in vitro transcription system yielded a fivefold or greater reduction in fimB-specific mRNA production. However, the marked increase in cellular FimB levels in the absence of H-NS was not the primary cause of the mutant rapid inversion phenotype. These results are discussed in regard to both H-NS as a transcriptional repressor of fimB expression and its role in regulating type 1 pilus promoter inversion.
The effect of B-site alloying on the electronic and opto-electronic properties of RbPbI3: A DFT study
Creators: name: Nyayban, Anupriya
name: Panda, Subhasis
name: Chowdhury, Avijit
Publisher: name: arXiv
Year: 2022
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Divalent cations mixed lead halide perovskites with enhanced performances, high stabilities, and reduced toxicity are requisite to make persistent progress in perovskite solar cells. However, the mixing strategy is not reported extensively in search of a lead reduced structure. Herein, we report the structural, electronic and optical properties of RbPb{1-x}MxI3 (where, M={Sn,Ge} and x={0.25, 0.50, 0.75}) by alloying the B-site with Sn and Ge, using the density functional theory. The formation enthalpy is estimated for all RbPb{1-x}MxI3 (with x= 0.25, 0.50, 0.75), which confirms stability for all the structures. The energy bandgap and density of states (DOS) have been thoroughly investigated. The energy bandgap decreases with the increasing Sn/Ge contents, the lowest bandgap of 1.850 eV is observed at x = 0.50 in the case of RbPb{1-x}GexI3 systems. Further, the effective masses and the binding energy of excitons and spectroscopic limited maximum efficiency (SLME) are also estimated for all the mixed systems. The exciton type is observed to change from Mott-Wannier to Frenkel type with increasing the contents of both Sn and Ge at the B-site. The maximum efficiency of 23% is achieved using an active layer containing an equal admixture of Sn/Ge and Pb. The estimated parameters of both the mixed systems are consistent with the available literature of similar types.
GenMod: A generative modeling approach for spectral representation of PDEs with random inputs
Creators: name: Wentz, Jacqueline
name: Doostan, Alireza
Publisher: name: arXiv
Year: 2022
Subjects: subject: Machine Learning (stat.ML)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: We propose a method for quantifying uncertainty in high-dimensional PDE systems with random parameters, where the number of solution evaluations is small. Parametric PDE solutions are often approximated using a spectral decomposition based on polynomial chaos expansions. For the class of systems we consider (i.e., high dimensional with limited solution evaluations) the coefficients are given by an underdetermined linear system in a regression formulation. This implies additional assumptions, such as sparsity of the coefficient vector, are needed to approximate the solution. Here, we present an approach where we assume the coefficients are close to the range of a generative model that maps from a low to a high dimensional space of coefficients. Our approach is inspired be recent work examining how generative models can be used for compressed sensing in systems with random Gaussian measurement matrices. Using results from PDE theory on coefficient decay rates, we construct an explicit generative model that predicts the polynomial chaos coefficient magnitudes. The algorithm we developed to find the coefficients, which we call GenMod, is composed of two main steps. First, we predict the coefficient signs using Orthogonal Matching Pursuit. Then, we assume the coefficients are within a sparse deviation from the range of a sign-adjusted generative model. This allows us to find the coefficients by solving a nonconvex optimization problem, over the input space of the generative model and the space of sparse vectors. We obtain theoretical recovery results for a Lipschitz continuous generative model and for a more specific generative model, based on coefficient decay rate bounds. We examine three high-dimensional problems and show that, for all three examples, the generative model approach outperforms sparsity promoting methods at small sample sizes.
Frictional figures of merit for single layered nanostructures
Creators: name: Cahangirov, S.
name: Ataca, C.
name: Topsakal, M.
name: Sahin, H.
name: Ciraci, S.
Publisher: name: arXiv
Year: 2014
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: We determined frictional figures of merit for a pair of layered honeycomb nanostructures, such as graphane, fluorographene, MoS$_2$ and WO$_2$ moving over each other, by carrying out ab-initio calculations of interlayer interaction under constant loading force. Using Prandtl-Tomlinson model we derived critical stiffness required to avoid stick-slip behavior. We showed that these layered structures have low critical stiffness even under high loading forces due to their charged surfaces repelling each other. The intrinsic stiffness of these materials exceed critical stiffness and thereby avoid the stick-slip regime and attain nearly dissipationless continuous sliding. Remarkably, tungsten dioxide displays much better performance relative to others and heralds a potential superlubricant. The absence of mechanical instabilities leading to conservative lateral forces is also confirmed directly by the simulations of sliding layers.