cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Story-gathering with the Urban Aboriginal Community Kitchen Garden Project
Creators: name: Mundel, Erika
Publisher: name: University of British Columbia
Year: 2008

description: This research focuses on the work of the Urban Aboriginal Community Kitchen Garden Project (the Garden Project). The Garden Project aims to be a culturally appropriate health promotion project with urban Aboriginal people, drawing on traditional Indigenous approaches to health and healing, and rooted in community food work. The project is situated within the context of colonialism, the destruction of traditional foodways, and subsequent increased need for Indigenous people to rely on a dominant food system that is seen as destructive to human and ecological health. The purpose of my research is to describe the Garden Project’s main goals and achievements from the perspective of project leaders, project participants as well as through my own observations and experiences. The research methodology was guided by participatory and community based approaches to research and qualitative methods were employed, focusing primarily on semi-structured interviews with project participants and project leaders. I also participated in and observed the project for two years, from September 2006-September 2008. Data collection and analysis happened through an iterative process of action and reflection. Based on my time with the Garden Project, I suggest that it can be seen simultaneously as a community food security, health promotion, and Indigenous health project. It connects participants with food as a natural product, builds skills around cooking and growing food, and increases knowledge about food system issues. Drawing on the health promotion discourse, it can be seen building community and social support networks, treating the whole person, and empowering participants to take actions around their own health needs. It is rooted in Indigenous approaches to health and healing in the way it promotes individuals’ physical, mental/emotional and spiritual health, the health of the community through cultural revitalization, and the health of the Universe through the opportunity it provides for awareness about ecosystem health. This research project was very site specific. Nevertheless, the findings suggest that food work with urban Indigenous people, carried out in a culturally sensitive manner, may be a powerful leverage point for promoting health with this population. These types of projects can also be vehicles for social change.
E-zdroje ve výuce kartografie a geoinformatiky – pohled očima pedagoga
Creators: name: Voženílek, Vít
Publisher: name: Zenodo
Year: 2024
Subjects: EIZ

description: Příspěvek předloží zkušenosti s postupným zaváděním, současným stavem a odhadem budoucího vývoje e-zdrojů v kartografii a geoinformatice, oborech, které stojí na průniku přírodních a technických věd. V úvodu příspěvku budou oba obory představeny a bude uveden i jejich vývoj za posledních 20-30 let. Pozornost bude věnována i vývoji osobnosti studenta a proměnám vysokoškolské výuky. Osobní zkušenosti s tvorbou studijních plánů, prezenční i distanční výukou a vedením doktorandů bude přednášející popisovat na konkrétních příkladech.
Plectranthias garrupellus Robins & Starck 1961
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias garrupellus

description: Plectranthias garrupellus Robins & Starck, 1961
Holotype: ANSP 95129, 52 mm SL, female.
Type locality: off Daytona Beach, Florida, 28°52’ N, 80°05’ W in 119 meters. Illustrations: Anderson & Heemstra, 2012, fig. 8; Bullock & Smith, 1991, pl. II, fig. D; Robins & Starck, 1961:313, fig. 7 (middle).
D: X, 15 to 17 (rarely 17). A: III, 7. P: 12 to 14 (usually 13). C: 17 (9 + 8). V: 26 (10 + 16). S: 3. GR: 14 to 18 (4 to 6 +10 to 13). LL: 28 or 29 (most frequently 29). CP: 12 to 14 (usually 14).
Distribution: western Atlantic from North Carolina to the Straits of Florida, Bahamas, eastern Gulf of Mexico, Caribbean Sea (Anderson & Heemstra, 2012: 42).
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 28, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283
title: Summary Report: Review of corals injured by the Deepwater Horizon oil spill in the Gulf of Mexico, with recommendations for coral propagation and genetic assessment
titleType: Other
Creators: name: Frometa, Janessy
name: Etnoyer, Peter
Publisher: name: National Oceanic and Atmospheric Administration
publisherIdentifier: https://ror.org/02z5nhe81
publisherIdentifierScheme: ROR
Year: 2023

description: DWH MDBC Summary Report 2023-01
description: This tech memo reports on the results of multiple analyses conducted by the Data Inventory and Analysis (DIA) team during the first year of the Coral Propagation Techniques Development (CPT) Project. Two prioritization exercises were conducted: a literature review for coral species prioritization and a genetic status of knowledge assessment. A team of 10 subject-matter experts (SMEs) reviewed the information and provided feedback during a two-hour focus group meeting held virtually in December of 2021. Key points discussed during the meeting and a summary of post-meeting SME feedback are also reported here.
Additional file 4: Figure S4. of Aneuploidy screening of embryonic stem cell clones by metaphase karyotyping and droplet digital polymerase chain reaction
Creators: name: Codner, Gemma
name: Loic Lindner
name: Caulder, Adam
name: Wattenhofer-DonzĂŠ, Marie
name: Radage, Adam
name: Mertz, Annelyse
name: Eisenmann, Benjamin
name: MiannĂŠ, Joffrey
name: Evans, Edward
name: Beechey, Colin
name: Fray, Martin
name: Marie-Christine Birling
name: HĂŠrault, Yann
name: Pavlovic, Guillaume
name: Teboul, Lydia
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: DNA input in ddPCR reaction. The figure shows copy number of Chr 8 (crosses) and Y (squares) measured by ddPCR with various input quantities of genomic DNA template. Vertical bars are Standard Errors. The experiment demonstrates linearity across the range of concentrations relevant to the DNA preparations assayed. This is a key point for the robustness of the screen, as gDNA preparations are challenging to standardize due to the disparity of growth rates between ES cell clones. (PDF 26 kb)
Additional file 2: of Fluid strategies and outcomes in patients with acute respiratory distress syndrome, systemic inflammatory response syndrome and sepsis: a protocol for a systematic review and meta-analysis
Creators: name: Silversides, Jonathan
name: Ferguson, Andrew
name: McAuley, Daniel
name: Blackwood, Bronagh
name: Marshall, John
name: Fan, Eddy
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Data abstraction form for randomised controlled trials. A modified version of this form will be used for observational studies.
Direct methanol fuel cell with extended reaction zone anode : PtRu and PtRuMo supported on fibrous carbon
Creators: name: Bauer, Alexander Günter
Publisher: name: University of British Columbia
Year: 2008

description: The direct methanol fuel cell (DMFC) is considered to be a promising power source for portable electronic applications and transportation. At present there are several challenges that need to be addressed before the widespread commercialization of the DMFC technology can be implemented. The methanol electro oxidation reaction is sluggish, mainly due to the strong adsorption of the reaction intermediate carbon monoxide on platinum. Further, methanol crosses over to the cathode, which decreases the fuel utilization and causes cathode catalyst poisoning. Another issue is the accumulation of the reaction product CO₂ (g) in the anode, which increases the Ohmic resistance and blocks reactant mass transfer pathways. A novel anode configuration is proposed to address the aforementioned challenges. An extended reaction zone (thickness = ∼100-300 µm) is designed to facilitate the oxidation of methanol on sites that are not close to the membrane-electrode interface. Thus, the fuel concentration near the membrane may decrease significantly, which may mitigate adverse effects caused by methanol cross-over. The structure of the fibrous electrode, with its high void space, is believed to aid the disengagement of CO₂ gas. In this thesis the first objective was to deposit dispersed nanoparticle PtRu(Mo) catalysts onto graphite felt substrates by surfactant mediated electrodeposition. Experiments, in which the surfactant concentration, current density, time and temperature were varied, were conducted with the objective of increasing the active surface area and thus improving the reactivity of the electrodes with respect to methanol electro-oxidation. The three-dimensional electrodes were characterized with respect to their deposit morphology, surface area, composition and catalytic activity. The second objective of this work was to utilize the catalyzed electrodes as anodes for direct methanol fuel cell operation. The fuel cell performance was studied as a function of methanol concentration, flow rate and temperature by using a single cell with a geometric area of 5 cm². Increased power densities were obtained with an in-house prepared 3D PtRu anode compared to a conventional PtRu catalyst coated membrane. Coating graphite felt substrates with catalytically active nanoparticles and the utilization of these materials, is a new approach to improve the performance of direct fuel cells.
Plectranthias helenae Randall 1980
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias helenae

description: Plectranthias helenae Randall, 1980
Holotype: BPBM 13957, 60.5 mm SL, male.
Type locality: off north shore of Oahu Island (21°43'36"–21°40' N, 158°04'06"–158°07'18" W), Hawaiian Islands, depth 119 to 168 meters. Illustrations: Randall, 1980:132, fig. 10; Randall, 2007a:192, bottom fig.
D: X, 15 or 16 (usually 15). A: III, 6 or 7 (usually 7). P: 14. C: 17. GR: 5 or 6 + 11 or 12. LL: 29 or 30. CP: 14.
Distribution: western and central North Pacific: Taiwan, Johnston Atoll, Hawaiian Islands.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 28, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283
Plectranthias inermis Randall 1980
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias inermis

description: Plectranthias inermis Randall, 1980
Holotype: BPBM 22468, 34.2 mm SL, male.
Type locality: southwest side of Caban Island, Batangas, Luzon, Philippine Islands, depth 30 meters. Illustrations: Heemstra & Randall, 2009: 9 (fig. 4), 17 (pl.1B & C); Kuiter, 2004:109, figs. A, B, C, at top; Randall, 1980:135, fig. 11; Williams et al., 2013:172, fig. 3.
D: X, 16 to 20. A: III, 7. P: 12 or 13. C: 13 or 14 (branched). V: 26 (10 + 16). S: 3. GR: 5 or 6 + 10 to 12. LL: incomplete, tube bearing scales 12 to 18. CP: 14 or 15.
Distribution: Indo–west Pacific: Mauritius, Christmas Island (Indian Ocean), Indonesia, Philippines, New Guinea.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 28, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283
Plectranthias intermedius
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias intermedius

description: Plectranthias intermedius (Kotthaus, 1973)
Xenanthias intermedius Kotthaus, 1973
Holotype: ZMH 5132, 80.8 mm SL.
Type locality: off Socotra Island, Arabian Sea, 11°33.9' N, 52°54' E to 11°38' N, 52°52' E, METEOR station 102, depth 290 to 190 meters. Illustrations: Heemstra & Randall, 2009:10, fig. 5; Kotthaus, 1973:22, figs. 293–296; Randall, 1980:138, fig. 12.
D: X, 17. A: III, 6 or 7. P: 14 or 15. C: 17. GR: 17 or 18 (5 or 6 + 12). LL: 31 to 34.
Distribution: northwestern Indian Ocean: Arabian Sea, off Socotra Island, near the entrance to the Gulf of Aden.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 28, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283
Additional file 8: Figure S7. of Aneuploidy screening of embryonic stem cell clones by metaphase karyotyping and droplet digital polymerase chain reaction
Creators: name: Codner, Gemma
name: Loic Lindner
name: Caulder, Adam
name: Wattenhofer-DonzĂŠ, Marie
name: Radage, Adam
name: Mertz, Annelyse
name: Eisenmann, Benjamin
name: MiannĂŠ, Joffrey
name: Evans, Edward
name: Beechey, Colin
name: Fray, Martin
name: Marie-Christine Birling
name: HĂŠrault, Yann
name: Pavlovic, Guillaume
name: Teboul, Lydia
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Cell Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Plasma Physics
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Outcome of copy counting by ddPCR with assays from different locations on a chromosome. Panel A shows the positions of Chr 8 assays within the chromosome (Primpol) and distally (Gse1). Panel B illustrates that different assays yield lesser (Primpol) or better (Gse1) efficiency of resolution between negative and positive droplets with cycling conditions optimized for the internal calibrator assay (Dot1l). Panel C shows comparable outcome with either assays: trisomic sample (Ts8) shows high copy number while external euploid control (C) shows copy number slightly below 2 (Vertical bars are Standard Errors.). We therefore elected to employ the latter assay for routine screening because of their compatibility for multiplexing (common optimal annealing temperature and good dot cloud resolution). (PDF 101 kb)
Self-balancing robot
Creators: name: Perry, Mike
name: Snyder, Nick
Publisher: name: Unknown
Year: 2016

description: The objective of this project was to design, simulate, and implement a state space controller using
MATLAB in order to balance an inverted pendulum robot. The robot was designed with two
separate motors, each driving a single wheel. Using sensor feedback from a gyroscope, an
accelerometer, and two encoders, a Raspberry Pi microcontroller was programmed to estimate and
manipulate the states of a state space model. The Raspberry Pi was programmed to send a request
to a motor driver, which in turn would send a pulse width modulated (PWM) signal to the motors
to move the pendulum to the desired angle. The controller was made to reject small disturbances,
such as a gentle push. Though self-balancing robots have been built using both the Raspberry Pi
and MATLAB, the combination of the two, to our knowledge, has never been used before. Most
robots of this type cannot get to a good starting point without human interaction. A mechanical
prop was designed into the frame to aid the robot to get to the desired position on start up.
MOESM2 of Absolute quantification of HTLV-1 basic leucine zipper factor (HBZ) protein and its plasma antibody in HTLV-1 infected individuals with different clinical status
Creators: name: Shiohama, Yasuo
name: Tadasuke Naito
name: Matsuzaki, Toshio
name: Tanaka, Reiko
name: Tomoyose, Takeaki
name: Takashima, Hiroshi
name: Fukushima, Takuya
name: Yuetsu Tanaka
name: Mineki Saito
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Immunology
subject: FOS: Clinical medicine
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology
subject: 110309 Infectious Diseases
subject: Plant Biology
subject: FOS: Biological sciences

description: Additional file 2. Table S1: Characterization of the produced monoclonal antibodies against HBZ. Table S2: Laboratory findings of HTLV-1 infected individuals for whom PBMCs and plasma samples were measured for HBZ protein and anti-HBZ Abs.
Plectranthias japonicus
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias japonicus

description: Plectranthias japonicus (Steindachner, 1883)
Paracirrhites japonicus Steindachner, in Steindachner & Döderlein, 1883
Holotype: NMW.
Type locality: Japan. Illustrations: Randall & Heemstra, 1978:169, fig. 3 A & B.
D: X, 14 to 16. A: III, 7. P: 15 to 17. C: 16 or 17. V: 26 (10 + 16). S: 2. GR: 5 to 8 +10 to 12. LL: 30 to 35. CP: 15.
Distribution: western Pacific and southeastern Indian Ocean.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 29, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283
Additional file 3: Figure S3. of Aneuploidy screening of embryonic stem cell clones by metaphase karyotyping and droplet digital polymerase chain reaction
Creators: name: Codner, Gemma
name: Loic Lindner
name: Caulder, Adam
name: Wattenhofer-DonzĂŠ, Marie
name: Radage, Adam
name: Mertz, Annelyse
name: Eisenmann, Benjamin
name: MiannĂŠ, Joffrey
name: Evans, Edward
name: Beechey, Colin
name: Fray, Martin
name: Marie-Christine Birling
name: HĂŠrault, Yann
name: Pavlovic, Guillaume
name: Teboul, Lydia
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Developmental Biology
subject: Cancer

description: Use of standard real time PCR for chromosome counting. The figure shows copy number of Chr 8 measured by qPCR with various input quantities of genomic DNA as template. The experiment demonstrates that although there is linearity across the range of concentrations relevant to the DNA preparations assayed, the assay is not sufficiently robust for the screen. Error bar amplitude varies with gDNA input and standardizing input is challenging due to the disparity of growth rates between ES cell clones. qPCR assays were performed in triplicates. SEM are represented by error bars. Both literature and our own experience concur in concluding that standard qPCR does not allow for sufficient accuracy to reliably identify clones worthy of microinjection. (PDF 25 kb)
Optimal control of linear Gaussian quantum systems via quantum learning control
Creators: name: Liu, Yu-Hong
name: Zeng, Yexiong
name: Tan, Qing-Shou
name: Dong, Daoyi
name: Nori, Franco
name: Liao, Jie-Qiao
Publisher: name: arXiv
Year: 2024
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Efficiently controlling linear Gaussian quantum (LGQ) systems is a significant task in both the study of fundamental quantum theory and the development of modern quantum technology. Here, we propose a general quantum-learning-control method for optimally controlling LGQ systems based on the gradient-descent algorithm. Our approach flexibly designs the loss function for diverse tasks by utilizing first- and second-order moments that completely describe the quantum state of LGQ systems. We demonstrate both deep optomechanical cooling and large optomechanical entanglement using this approach. Our approach enables the fast and deep ground-state cooling of a mechanical resonator within a short time, surpassing the limitations of sideband cooling in the continuous-wave driven strong-coupling regime. Furthermore, optomechanical entanglement could be generated remarkably fast and surpass several times the corresponding steady-state entanglement, even when the thermal phonon occupation reaches one hundred. This work will not only broaden the application of quantum learning control, but also open an avenue for optimal control of LGQ systems.
description: 14 pages, 7 figures
Plectranthias jothyi Randall 1996
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias jothyi

description: Plectranthias jothyi Randall, 1996
Holotype: BPBM 30230, 92.0 mm SL, male.
Type locality: Strait of Malacca, off west coast of peninsular Malaysia, depth 180 to 400 meters. Illustration: Randall, 1996:122, fig. 1.
D: X, 17 or 18. A: III, 7. P: 14 or 15. C: 17 (9 +8). V: 26 (10 + 16). S: 3. GR: 18 or 19 (6 + 12 or 13). LL: 34. CP: 16.
Distribution: Malaysia.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 29, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283
Additional file 1: of Impact of HIV infection on the presentation, outcome and host response in patients admitted to the intensive care unit with sepsis; a case control study
Creators: name: Wiewel, Maryse
name: MichaĂŤla Huson
name: Vught, Lonneke Van
name: Hoogendijk, Arie
name: Klouwenberg, Peter Klein
name: Horn, Janneke
name: RenĂŠ Lutter
name: Cremer, Olaf
name: Schultz, Marcus
name: Bonten, Marc
name: Poll, Tom Van Der
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases
subject: 60506 Virology
subject: FOS: Biological sciences
subject: Computational Biology

description: Characteristics of HIV-positive patients with pneumosepsis with and without readmission. (DOCX 17 kb)
Plectranthias kamii Randall 1980
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias kamii

description: Plectranthias kamii Randall, 1980
Holotype: BPBM 19636, 215 mm SL, male.
Type locality: Naha fish market, Okinawa, Ryukyu Islands, Japan. Illustrations: Chen & Shao, 2002:67, figs. 3 & 4; Kuiter, 2004:113, fig. at lower left; Randall, 1980:142, fig.14.
D: X, 18 or 19. A: III, 7. P: 13. C: 17 (9 + 8). V: 26 (10 + 16). S: 3. GR: 5 or 6 + 11 to 13. LL: 33 to 38. CP: 15.
Distribution: western Pacific.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 29, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283
Additional file 11: of A MAGIC population-based genome-wide association study reveals functional association of GhRBB1_A07 gene with superior fiber quality in cotton
Creators: name: Md Islam
name: Thyssen, Gregory
name: Jenkins, Johnie
name: Linghe Zeng
name: Delhom, Christopher
name: McCarty, Jack
name: Deng, Dewayne
name: Hinchliffe, Doug
name: Jones, Don
name: Fang, David
Publisher: name: Figshare
Year: 2016
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: Hematology

description: Title: Manhattan plots generated from TASSEL 5.0 software for six fiber quality traits, A) Elongation (ELO), B) Micronaire (MIC), C) Short fiber content (SFC), D) Fiber strength (STR), E) Upper half mean (UHM) fiber length, and F) Uniformity (UI). The negative log10 transformed p values were plotted against the marker positions on the physical map of each of the 26 Upland cotton chromosome. The significant thresholds (pâ  =â  0.01 and 0.0001) are indicated by the purple and green horizontal dot line, respectively. Description of data: Manhattan plots generated from TASSEL 5.0 software for six fiber quality traits from GWAS analysis following MLM are included in this figure. The X and Y axis have chromosome name and observed negative logarithm 10 of p value, respectively. (DOCX 813Â kb)
Plectranthias kelloggi
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias kelloggi

description: Plectranthias kelloggi (Jordan & Evermann, 1903)
Anthias kelloggi Jordan & Evermann, 1903
Holotype: USNM 50642, 146 mm SL.
Type locality: off Kailua, Hawaii. Illustrations: Randall, 1980:146, fig. 15; Randall, 2007a:193, top fig.
D: X, 14 to 16. A: III, 7. P: 14 to 16. C: 17 (9 + 8). V: 26 (10 + 16). S: 3. GR: 20 to 24 (6 to 8 +14 to 17). LL: 32 to 38. CP: 15 to 17.
Distribution: western and central Pacific.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 29, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283
Additional file 2: of Patients’ and healthcare providers’ perceptions of a mobile portal application for hospitalized patients
Creators: name: O’Leary, Kevin
name: Sharma, Rashmi
name: Killarney, Audrey
name: O’Hara, Lyndsey
name: Lohman, Mary
name: Eckford Culver
name: Liebovitz, David
name: Cameron, Kenzie
Publisher: name: Figshare
Year: 2016
Subjects: subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences

description: Patient Interview and Provider Focus Group Questions: this appendix provides the questions used during semi-structured interviews of patients and focus groups of healthcare providers. (DOCX 15 kb)
Water Landscapes: A Study of Controlled Flooding and Hydrological Patterns to Restore Mumbai’s Resilience Towards an Urban Estuary
Creators: name: Dubey, Arunima
Publisher: name: Carnegie Mellon University
Year: 2024
Subjects: Built Environment and Design not elsewhere classified

description:  Urban Flooding is now a global issue and Mumbai, India is no exception. Centuries of land reclamation, regulation of water streams with reduction of riparian zones, and rapid urbanization have led to reduced green cover and resulted in the city consistently flooding since 2005. (Gupta, 2009 [1]) This pattern of reclamation in response to the city’s growth hasn’t been without consequences. A 2020 study established that most flood zones are in reclaimed areas since these weren’t developed considering natural dynamic processes of perpetual water flooding, such as high tide conditions or rising sea levels. (Sansare & Mhaske, 2020 [2]) This study aims to conduct an urban-level analysis of the water behavior and urban topology in the city of Mumbai. Using a historical analysis of land transformation with high-risk urban flooding areas, the focus is on a deeper understanding of the natural phenomena of flooding in the context of urban development and green infrastructure. The study draws a connection between naturalized water behavior and flood patterns using physical simulation and GIS analysis to suggest strategies for future adaptation of green infrastructure for high-risk-prone neighborhoods. The focus is on pattern development for hyperlocal water/bioswale systems that support transient water landscapes and social spaces, with limited impact on existing settlements. The hypothesis is centered on landscape design for controlled flooding, taking into consideration topography, existing infrastructure, and traditional water patterns to prevent large-scale disruption and destruction of property, improve the social equity of occupants through public land use, and encourage biodiversity. The study would benefit urban planners, local building authorities, and engineers in implementing design strategies for both existing and potential developments at a building and urban scale.
Plectranthias klausewitzi Zajonz 2006
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias klausewitzi

description: Plectranthias klausewitzi Zajonz, 2006
Holotype: SMF 29279, 44.9 mm SL, female.
Type locality: northwest of Perim Island, Strait of Perim, Yemen, southern Red Sea, 12°43.7' N, 43°15.0' E, depth 228 to 235 meters.
Illustrations: Heemstra & Randall, 2009:11, fig. 6; Zajonz, 2006:21, fig. 2.
D: X, 14 or 15. A: III, 7. P: 14 or 15. C: 15 to 17 branched rays. V: 26 (10 + 16). S: 3.
GR: 3 to 5 + 11 to 13. LL: 29. CP: 11 to 13.
Distribution: Red Sea.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 29, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283
Hydrodynamics, stability and scale-up of slot-rectangular spouted beds
Creators: name: Chen, Zhiwei
Publisher: name: University of British Columbia
Year: 2008

description: Slot-rectangular spouted beds, with rectangular cross-section and slotted gas inlets, have been proposed as a solution to overcoming scale-up difficulties with conventional axisymmetric spouted beds. They can be utilized in gas/particle processes such as drying of coarse particles and coating of tablets. However, application of this spouted bed was limited because of instability and insufficient hydrodynamic studies. The present work is therefore aimed at the study of hydrodynamics, stability and scale-up of slot-rectangular spouted beds. The hydrodynamic study was carried out in four slot-rectangular columns of various width-to-thickness ratios combined with various slot configurations, particles of different properties and a range of operating conditions. Hydrodynamics of slot-rectangular spouted beds showed major similarity with conventional spouted beds. However, equations and mechanistic models adopted from conventional axisymmetric spouted beds generally failed to provide good predictions for the three-dimensional slot-rectangular geometry. New empirical correlations were derived for the minimum spouting velocity and maximum pressure drop for different slot configurations. Slot-rectangular spouted beds also showed more flow regimes than conventional spouted beds. Nine flow regimes, as well as unstable conditions, were identified based on frequency and statistical analysis of pressure fluctuations. Slot geometrical configuration was found to be the main factor affecting the stability of slot-rectangular spouted beds. A comprehensive hydrodynamic study on the effect of slot configuration was therefore carried out. Slots of smaller length-to-width ratio, smaller length and greater depth were found to provide greater stability. Stable criteria for the slot configuration were found consistent with the conventional axisymmetric spouted beds with extra limitation on slot length-to-width ratio and slot depth. Local distributions of pressure, particle velocity and voidage, as well as spout shape and particle circulating flux, were compared for different slot configurations. Higher slot length-to-width ratios lead to slightly higher particle circulation rates. A previously proposed scale-up method involving multiple chambers was tested in the present work using multiple slots. Instability caused by the merging of multiple spouts and asymmetric flow was successfully prevented by suspending vertical partitions between the fountains. Some criteria and guidelines were also proposed for scale-up using multiple chambers.
Plectranthias knappi Randall 1996
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias knappi

description: Plectranthias knappi Randall, 1996
Holotype: USNM 219865, 66.0 mm SL, female.
Type locality: southwest of Caruruan Point, Visayan Sea between northern Negros and Masbate Island (11°38'00" N, 123°52'38" E), Philippine Islands, depth 89.7 meters. Illustration: Randall, 1996:127, fig. 2.
D: X, 16. A: III, 7. P: 14. C: 17 (9 +8). V: 26 (10 + 16). S: 3. GR: 16 (6 + 10). LL: 29. CP: 14.
Distribution: western North Pacific: Philippine Islands.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 30, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283
Additional file 14: of A MAGIC population-based genome-wide association study reveals functional association of GhRBB1_A07 gene with superior fiber quality in cotton
Creators: name: Md Islam
name: Thyssen, Gregory
name: Jenkins, Johnie
name: Linghe Zeng
name: Delhom, Christopher
name: McCarty, Jack
name: Deng, Dewayne
name: Hinchliffe, Doug
name: Jones, Don
name: Fang, David
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Title: LD contour plot in the Upland cotton genomic region of 71 to 77 Mb on chromosome A07. LD contour was created from genotypic data of 547 RILs of Upland cotton MAGIC population using JMP genomics 6.0 software. X axis is physical distance in Mb and r2 (CorrCoeff2) between marker pair is shown in different color block as per legend. Description of data: LD contour plot of genomic region of 71 to 77 Mb on chromosome A07 is included in this figure. Red color represents the higher r2 value between two markers due to LD block. The square of correlation coefficients (r2) presents as color code (red to blue – 1.000 to 0.000). (DOCX 69 kb)
Inferencing Gene Regulatory Networks for Drosophila Eye Development Using an Ensemble Machine Learning Approach
Creators: name: Mohammed, Abdul Jawad
Publisher: name: Purdue University Graduate School
Year: 2024
Subjects: classificationCode: 310208
subject: Translational and applied bioinformatics
classificationCode: 310506
subject: Gene mapping
classificationCode: 461199
subject: Machine learning not elsewhere classified
classificationCode: 330301
subject: Data visualisation and computational (incl. parametric and generative) design
classificationCode: 310902
subject: Animal cell and molecular biology
classificationCode: 490508
subject: Statistical data science

description: The primary purpose of this thesis is to propose and demonstrate BioGRNsemble, a modular and flexible approach for inferencing gene regulatory networks from RNA-Seq data. Integrating the GENIE3 and GRNBoost2 algorithms, this ensembles-of-ensembles method attempts to balance the outputs of both models through averaging, before providing a trimmed-down gene regulatory network consisting of transcription and target genes. Using a Drosophila Eye Dataset, we were able to successfully test this novel methodology, and our validation analysis using an online database determined over 3500 gene links correctly detected, albeit out of almost 530,000 predictions, leaving plenty of room for improvement in the future.
Additional file 2: of New global analysis of the microRNA transcriptome of primary tumors and lymph node metastases of papillary thyroid cancer
Creators: name: Saiselet, Manuel
name: Gacquer, David
name: Spinette, Alex
name: Craciun, Ligia
name: Decaussin-Petrucci, Myriam
name: Andry, Guy
name: Detours, Vincent
name: Maenhaut, Carine
Publisher: name: Figshare
Year: 2015
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Cancer

description: Supplemental materials and methods. (PDF 652 kb)
Additional file 3: of Analysis of resources assisting in coping with swallowing difficulties for patients with Parkinsonâ  s disease: a cross-sectional study
Creators: name: Matsushima, Aiko
name: Matsushima, Junichi
name: Matsumoto, Akihisa
name: Moriwaka, Fumio
name: Honma, Sanae
name: Itoh, Kazunori
name: Yamada, Keiko
name: Shimohama, Shun
name: Ohnishi, Hirofumi
name: Mori, Mitsuru
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Science Policy

description: APPENDIX of Questions Extracted from the SDQ for the Study Here. Fourteen questions (1 to 14) were rated by a four-point (0 to 3) scale (0 for no disability and 3 for severe disability) and one (question 15) was a "yes/no" question (yes was scored 2.5 and no was scored 0.5). (DOCX 35Â kb)
Plectranthias lasti Randall & Hoese 1995
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias lasti

description: Plectranthias lasti Randall & Hoese, 1995
Holotype: AMS I.22807–056, 49.2 mm SL, male.
Type locality: 175 kilometers north of Port Hedland (18°32' S, 118°17' E), Northwest Shelf, Western Australia, depth 200 to 204 meters. Illustration: Randall & Hoese, 1995:332, fig. 3.
D: X, 14. A: III, 7. P: 15. C: 17 (9 + 8). V: 26 (10 + 16). S: 2. GR: 17 (5 + 12). LL: 30. CP: 12.
Distribution: northwestern Australia: off Western Australia.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 30, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283
Additional file 2: of Analysis of resources assisting in coping with swallowing difficulties for patients with Parkinsonâ  s disease: a cross-sectional study
Creators: name: Matsushima, Aiko
name: Matsushima, Junichi
name: Matsumoto, Akihisa
name: Moriwaka, Fumio
name: Honma, Sanae
name: Itoh, Kazunori
name: Yamada, Keiko
name: Shimohama, Shun
name: Ohnishi, Hirofumi
name: Mori, Mitsuru
Publisher: name: Figshare
Year: 2016
Subjects: subject: Cell Biology
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Marine Biology
subject: Science Policy

description: APPENDIX of Questions Related to Personal Matters Here. (DOCX 36Â kb)
Additional file 17: of A MAGIC population-based genome-wide association study reveals functional association of GhRBB1_A07 gene with superior fiber quality in cotton
Creators: name: Md Islam
name: Thyssen, Gregory
name: Jenkins, Johnie
name: Linghe Zeng
name: Delhom, Christopher
name: McCarty, Jack
name: Deng, Dewayne
name: Hinchliffe, Doug
name: Jones, Don
name: Fang, David
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Title: Sashimi plot of parental lines showing 18 bp of deletion on parent Acala Ultima (AU) at genomic region 76,911,659 to 76,911,676 bp on chromosome A07. Description of data: Sashimi plot of parental lines generated from Integrated Genome Viewer (IGV) software is included in this file. The parent AU (row number 1) has an 18 bp deletion at genomic region 76,911,659 to 76,911,676 bp on exon 29 of gene Gh_A07G2049 on chromosome A07 while other parental lines don’t have that deletion. (DOCX 50 kb)
Plectranthias longimanus
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias longimanus

description: Plectranthias longimanus (Weber, 1913)
Pteranthias longimanus Weber, 1913
Lectotype: ZMA 113364, 19.8 mm SL.
Type locality: Paternoster Islands (east of Sailus Besar, north of Sumbawa), Indonesia, depth 36 meters (selected by Randall, 1980:149). Illustrations: Heemstra & Randall, 2009:11 (fig. 7), 17 (pl. 1D); Kuiter, 2004:112, figs. A, B, & C; Masuda et al., 1975:51, fig. I; Randall, 1980:148, fig.16; Williams et al., 2013:173, fig. 5.
D: X, 13 to 15. A: III, 6 or 7. P: 12 or 13. C: 13 to 15 (branched). V: 26 (10 + 16). S: 2. GR: 4 to 6 + 9 to 12. LL: 12 to 15 (incomplete). CP: 12.
Distribution: widespread in the Indo–west Pacific from east Africa to southern Japan and Ogasawara Islands, Australia, New Caledonia, Marshall Islands, and Fiji.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 30, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283
Plectranthias maugei Randall 1980
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias maugei

description: Plectranthias maugei Randall, 1980
Holotype: MNHN 1978–0083, 56.2 mm SL.
Type locality: off Tuléar, Madagascar (23°36'03" S, 43°32'05" E), depth 250 meters. Illustrations: Heemstra & Randall, 2009:12, fig. 8; Randall, 1980:153, fig. 18.
D: X, 15. A: III, 7. P: 13. C: 14–branched. GR: 16 or 17 (5 + 11 or 12). LL: 29 or 30. CP: 14.
Distribution: western Indian Ocean: off Madagascar.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 30, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283
Astragalus nuttallianus var. imperfectus Barneby, Leafl.
Creators: name: Castillón, Eduardo Estrada
name: Quintanilla, José Ángel Villarreal
name: Delgado-Salinas, Alfonso
name: Rebman, Jon P.
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Astragalus
Astragalus nuttallianus
Astragalus nuttallianus dc. var. imperfectus (rydb.) barneby, leafl.

description: 62.3. Astragalus nuttallianus DC. var. imperfectus (Rydb.) Barneby, Leafl. West. Bot. 3: 1009. 1942
 Type:— USA, Nevada, Nye County, Rhyolite, 17 May 1909, Heller 9637 (holotype (based on Hamosa imperfecta) NY00011921!; isotype: RENO009575 digital image!, PH00013580 digital image!).
 Hamosa imperfecta Rydb., Bull. Torrey Bot. Club 54: 329. 1927.
Leaflets elliptic, none retuse; calyx teeth short, 1–2 mm long; the tube 1.9–2.8 mm long, the trichomes appressed o slightly ascendant, up to 0.8 mm long.
 Distribution:— Northwestern Mexico, Baja California in northeastern (Cucupa Mts.), at El Mármol, 12 km N to Santa Ynés Ranch (29°53’N – 114°51’W); in Sonora, isolated at the northwestern, adjacent to the Pinacate Volcano (31°46’N – 113°26’W) and isolated also in San Carlos Bay (27°58’N – 111° 04’W). Also, in Colorado, Utah, California, and Arizona (USA) (Fig. 19).
 Habitat:— Adjacent to coastal dunes; gravel soils; bottom of canyons; stony plains; alluvial plains; desert scrubland; 1–420 m.
 Specimens examined:— BAJA CALIFORNIA: 18 April 1905, Crater, Arrobrito, Cucapa Mts., D. MacDougal 203 (NY), 24 February1973, Agua Dulce, R. Moran 20260, J. L. Reveal (NY); SONORA: 15 April 1992, Campo Rojo, east side of Pinacate volcanic field, R. S. Felger 92-481B, S. W. Whitely (MEXU, NY); 15 May 2010, Ánimas Valley, 58.7 km (byr air) E. of Agua Prieta, Cuenca Los Ojos Foundation property, T. R. Van Devender 2010-406, A. L. Reina, C. Roll (MEXU, USON); 23 March 1970, Mpio. Puerto Peñasco, ca. 0.5 km S of Pinacate Peak, Sierra Pinacate, R. S. Felger 19310 (USON 15 April 1992, Campo Rojo, east side of Pinacate volcanic field, R. S. Felger 92-481B. S. W. Whitely (MEXU).
description: Published as part of Castillón, Eduardo Estrada, Quintanilla, José Ángel Villarreal, Delgado-Salinas, Alfonso & Rebman, Jon P., 2023, The genus Astragalus (Leguminosae: Papilionoideae: Galegeae) in Mexico, pp. 1921-1935 in Phytotaxa 586 (1) on pages 1921-1935, DOI: 10.11646/phytotaxa.586.1.1, http://zenodo.org/record/7703999
Additional file 1: of New global analysis of the microRNA transcriptome of primary tumors and lymph node metastases of papillary thyroid cancer
Creators: name: Saiselet, Manuel
name: Gacquer, David
name: Spinette, Alex
name: Craciun, Ligia
name: Decaussin-Petrucci, Myriam
name: Andry, Guy
name: Detours, Vincent
name: Maenhaut, Carine
Publisher: name: Figshare
Year: 2015
Subjects: subject: Molecular Biology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer

description: Figure S1 to S9 and Table S1 to S4. (PDF 1467 kb)
Plectranthias maculicauda
Creators: name: William D. Anderson, Jr.
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Perciformes
Serranidae
Plectranthias
Plectranthias maculicauda

description: Plectranthias maculicauda (Regan, 1914)
Serranops maculicauda Regan, 1914
Lectotype: BMNH 1913.12.4.12– 19, 83 mm SL (selected by Randall, 1980:152).
Type locality: off North Cape, Aupori Peninsula, North Island, New Zealand, depth 128 meters. Illustrations: Kuiter, 2004:113, figs. A & B; Randall, 1980:151, fig. 17.
D: X, 15. A: III, 7. P: 14 to 16. C: 17 (9 + 8). V: 26 (10 + 16). S: 3. GR: 6 to 8 + 15 to 17. LL: 32 to 34.
Distribution: western South Pacific.
description: Published as part of William D. Anderson, Jr., 2018, Annotated checklist of anthiadine fishes (Percoidei: Serranidae), pp. 1-62 in Zootaxa 4475 (1) on page 30, DOI: 10.11646/zootaxa.4475.1.1, http://zenodo.org/record/1453283