cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Gas density perturbations induced by forming planet(s) in the AS 209 protoplanetary disk as seen with ALMA
Creators: name: Favre, Cécile
name: Fedele, Davide
name: Maud, Luke
name: Booth, Richard
name: Tazzari, Marco
name: Miotello, Anna
name: Testi, Leonardo
name: Semenov, Dmitry
name: Bruderer, Simon
Publisher: name: arXiv
Year: 2018
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: The formation of planets occurs within protoplanetary disks surrounding young stars, resulting in perturbation of the gas and dust surface densities. Here, we report the first evidence of spatially resolved gas surface density ($Σ_{g}$) perturbation towards the AS~209 protoplanetary disk from the optically thin C$^{18}$O ($J=2-1$) emission. The observations were carried out at 1.3~mm with ALMA at a spatial resolution of about 0.3$\arcsec$ $\times$ 0.2$\arcsec$ (corresponding to $\sim$ 38 $\times$ 25 au). The C$^{18}$O emission shows a compact ($\le$60~au), centrally peaked emission and an outer ring peaking at 140~au, consistent with that observed in the continuum emission and, its azimuthally averaged radial intensity profile presents a deficit that is spatially coincident with the previously reported dust map. This deficit can only be reproduced with our physico-thermochemical disk model by lowering $Σ_{gas}$ by nearly an order of magnitude in the dust gaps. Another salient result is that contrary to C$^{18}$O, the DCO$^{+}$ ($J=3-2$) emission peaks between the two dust gaps. We infer that the best scenario to explain our observations (C$^{18}$O deficit and DCO$^{+}$ enhancement) is a gas perturbation due to forming-planet(s), that is commensurate with previous continuum observations of the source along with hydrodynamical simulations. Our findings confirm that the previously observed dust gaps are very likely due to perturbation of the gas surface density that is induced by a planet of at least 0.2~M$\rm_{Jupiter}$ in formation. Finally, our observations also show the potential of using CO isotopologues to probe the presence of saturn mass planet(s).
description: Accepted for publication by ApJ
title: Literacias digitais de adolescentes portugueses
Creators: name: Ponte, Cristina
name: Batista, Susana
name: Marôpo, Lidia
name: Castro, Teresa
name: Kubrusly, Ana
name: Garcia, Margarida
name: Matos, Tatiana
Publisher: name: ICNOVA, Faculdade de Ciências Sociais e Humanas, Universidade NOVA de Lisboa.
Year: 2024

description: Este relatório apresenta os resultados do estudo longitudinal de três anos (de 2021 a 2023) com adolescentes portugueses e que fez parte do projeto europeu ySKILLS. Este projeto investigou como evoluem as literacias digitais de adolescentes - enquanto conjunto de conhecimentos e competências - e que influências podem ter nos seus níveis de bem-estar.
description: Ponte, C., Batista, S., Maropo, L., Castro, T., Kubrusly, A., Garcia, M. Matos, T. (2024). Literacias digitais de adolescentes portugueses. ICNOVA, Faculdade de Ciências Sociais e Humanas, Universidade NOVA de Lisboa. 54 pgs.
Effects of two dimensional plasmons on the tunneling density of states
Creators: name: Khveshchenko, D. V.
name: Reizer, Michael
Publisher: name: arXiv
Year: 1997
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We show that gapless plasmons lead to a universal $(δν(ε)/ν\propto |ε|/E_F)$ correction to the tunneling density of states of a clean two dimensional Coulomb interacting electron gas. We also discuss a counterpart of this effect in the "composite fermion metal" which forms in the presence of a quantizing perpendicular magnetic field corresponding to the half-filled Landau level. We argue that the latter phenomenon might be relevant for deviations from a simple scaling observed by A.Chang et al in the tunneling $I-V$ characteristics of Quantum Hall liquids.
description: 12 pages, Latex, NORDITA report
The charge density of semiconductors in the GW approximation
Creators: name: Rieger, Martin M.
name: Godby, R. W.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: We present a method to calculate the electronic charge density of periodic solids in the GW approximation, using the space-time method. We investigate for the examples of silicon and germanium to what extent the GW approximation is charge-conserving and how the charge density compares with experimental values. We find that the GW charge density is close to experiment and charge is practically conserved. We also discuss how using a Hartree potential consistent with the level of approximation affects the quasi-particle energies and find that the common simplification of using the LDA Hartree potential is a very well justified.
description: 5 pages (LaTeX) plus 2 Figures (PostScript)
Pseudohercostomus sinensis Yang & Grootaert 1999
Creators: name: Grootaert, Patrick
name: Velde, Isabella Van de
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Dolichopodidae
Pseudohercostomus
Pseudohercostomus sinensis

description: Pseudohercostomus sinensis Yang & Grootaert, 1999
Yang & Grootaert, 1999: 262 (figs. 25–27: 25: wing; 26: antenna; 27: male terminalia).
 The collections at China Agricultural University in Beijing were recently relocated and the type specimen was not found during the present study, so the presence of uniformly set small bristles on the anterior part of the mesoscutum, a wide metepimeron, and rows of anterodorsal combs on mid and hind tarsi could not be confirmed. The species might not be congeneric with Pseudohercostomus. This is suggested by the parallel-running vein R 4+5 and M 1 in P. sinensis, while in other species such as P. singaporensis, new species, P. echinatus, and P. congoensis, new species, veins R 4+5 and M 1 are weakly diverging.
description: Published as part of Grootaert, Patrick & Velde, Isabella Van de, 2021, Understanding the tangled taxonomy of the genus Pseudohercostomus Stackelberg, 1931 (Insecta: Diptera: Dolichopodidae) with description of new species from Singapore and DR Congo, pp. 324-335 in Raffles Bulletin of Zoology 69 on page 334, DOI: 10.26107/RBZ-2021-0055, http://zenodo.org/record/7174735
Controllably Sparse Perturbations of Robust Classifiers for Explaining Predictions and Probing Learned Concepts
Creators: name: Roberts, Jay
name: Tsiligkaridis, Theodoros
Publisher: name: The Eurographics Association
Year: 2021
Subjects: Computing methodologies
Machine learning
Artificial intelligence

description: Explaining the predictions of a deep neural network (DNN) in image classification is an active area of research. Many methods focus on localizing pixels, or groups of pixels, which maximize a relevance metric for the prediction. Others aim at creating local "proxy" explainers which aim to account for an individual prediction of a model. We aim to explore "why" a model made a prediction by perturbing inputs to robust classifiers and interpreting the semantically meaningful results. For such an explanation to be useful for humans it is desirable for it to be sparse; however, generating sparse perturbations can computationally expensive and infeasible on high resolution data. Here we introduce controllably sparse explanations that can be efficiently generated on higher resolution data to provide improved counter-factual explanations. Further we use these controllably sparse explanations to probe what the robust classifier has learned. These explanations could provide insight for model developers as well as assist in detecting dataset bias.
description: Machine Learning Methods in Visualisation for Big Data
description: Papers
description: 1
description: 5
description: Jay Roberts and Theodoros Tsiligkaridis
description: CCS Concepts: Computing methodologies --> Machine learning; Artificial intelligence
How does the electromagnetic field couple to gravity, in particular to metric, nonmetricity, torsion, and curvature?
Creators: name: Hehl, Friedrich W.
name: Obukhov, Yuri N.
Publisher: name: arXiv
Year: 2000
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The coupling of the electromagnetic field to gravity is an age-old problem. Presently, there is a resurgence of interest in it, mainly for two reasons: (i) Experimental investigations are under way with ever increasing precision, be it in the laboratory or by observing outer space. (ii) One desires to test out alternatives to Einstein's gravitational theory, in particular those of a gauge-theoretical nature, like Einstein-Cartan theory or metric-affine gravity. A clean discussion requires a reflection on the foundations of electrodynamics. If one bases electrodynamics on the conservation laws of electric charge and magnetic flux, one finds Maxwell's equations expressed in terms of the excitation H=(D,H) and the field strength F=(E,B) without any intervention of the metric or the linear connection of spacetime. In other words, there is still no coupling to gravity. Only the constitutive law H= functional(F) mediates such a coupling. We discuss the different ways of how metric, nonmetricity, torsion, and curvature can come into play here. Along the way, we touch on non-local laws (Mashhoon), non-linear ones (Born-Infeld, Heisenberg-Euler, Plebanski), linear ones, including the Abelian axion (Ni), and find a method for deriving the metric from linear electrodynamics (Toupin, Schoenberg). Finally, we discuss possible non-minimal coupling schemes.
description: Latex2e, 26 pages. Contribution to "Testing Relativistic Gravity in Space: Gyroscopes, Clocks, Interferometers ...", Proceedings of the 220th Heraeus-Seminar, 22 - 27 August 1999 in Bad Honnef, C. Laemmerzahl et al. (eds.). Springer, Berlin (2000) to be published (Revised version uses Springer Latex macros; Sec. 6 substantially rewritten; appendices removed; the list of references updated)
Oia Wunderlich 1973
Creators: name: Tanasevitch, Andrei V.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Linyphiidae
Oia

description: Oia Wunderlich, 1973
 Type species. Oia sororia Wunderlich, 1973, by original designation.
 Diagnosis. A new, clarified and extended diagnosis of the genus has recently been proposed by Tanasevitch (2019b).
 Species included. The genus presently contains five species, including the new species described below: Oia breviprocessia Song & Li, 2010, O. imadatei (Oi, 1964), O. kathmandu Tanasevitch, 2019, O. sororia Wunderlich, 1973, and O. probosciella, new species.
 Distribution. Russian Far East, eastern China, Korea, Japan, Taiwan, West Bengal (India), and Nepal (World Spider Catalog, 2022).
 Range. The genus shows a typical southern East Asian Palaearctic distribution pattern (sensu Vtorov & Drozdov, 1978), with only the southern part of its range entering the Oriental Region.
description: Published as part of Tanasevitch, Andrei V., 2022, Two new species and six new records of linyphiid spiders from Vietnam (Araneae: Linyphiidae), pp. 305-311 in Raffles Bulletin of Zoology 70 on page 306, DOI: 10.26107/RBZ-2022-0014, http://zenodo.org/record/7174861
Additional file 9: of The CTLA-4 x OX40 bispecific antibody ATOR-1015 induces anti-tumor effects through tumor-directed immune activation
Creators: name: Kvarnhammar, Anne
name: Veitonmäki, Niina
name: Hägerbrand, Karin
name: Dahlman, Anna
name: Smith, Karin
name: Fritzell, Sara
name: Schantz, Laura
name: Thagesson, Mia
name: Werchau, Doreen
name: Smedenfors, Kristine
name: Johansson, Maria
name: Rosén, Anna
name: Åberg, Ida
name: Winnerstam, Magnus
name: Nyblom, Eva
name: Barchan, Karin
name: Furebring, Christina
name: Norlén, Per
name: Ellmark, Peter
Publisher: name: figshare
Year: 2019
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer

description: Figure S7. Non-responsive models. (DOCX 117 kb)
Revealing Multimodality in Ensemble Weather Prediction
Creators: name: Galmiche, Natacha
name: Hauser, Helwig
name: Spengler, Thomas
name: Spensberger, Clemens
name: Brun, Morten
name: Blaser, Nello
Publisher: name: The Eurographics Association
Year: 2021
Subjects: Applied computing
Earth and atmospheric sciences
Human
centered computing
Visual analytics
Computing methodologies
Unsupervised learning

description: Ensemble methods are widely used to simulate complex non-linear systems and to estimate forecast uncertainty. However, visualizing and analyzing ensemble data is challenging, in particular when multimodality arises, i.e., distinct likely outcomes. We propose a graph-based approach that explores multimodality in univariate ensemble data from weather prediction. Our solution utilizes clustering and a novel concept of life span associated with each cluster. We applied our method to historical predictions of extreme weather events and illustrate that our method aids the understanding of the respective ensemble forecasts.
description: Machine Learning Methods in Visualisation for Big Data
description: Papers
description: 7
description: 11
description: Natacha Galmiche, Helwig Hauser, Thomas Spengler, Clemens Spensberger, Morten Brun, and Nello Blaser
description: CCS Concepts: Applied computing --> Earth and atmospheric sciences; Human-centered computing --> Visual analytics; Computing methodologies --> Unsupervised learning
The Hyades tidal tails revealed by Gaia DR2
Creators: name: Röser, Siegfried
name: Schilbach, Elena
name: Goldman, Bertrand
Publisher: name: arXiv
Year: 2018
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: Within a 200 pc sphere around the Sun we search for the Hyades tidal tails in the Gaia DR2 dataset. We use a modified convergent point method to search for stars with space velocities close to the space velocity of the Hyades cluster. We find a clear indication for the existence of the Hyades tidal tails, a preceding tail extending up to 170 pc from the centre of the Hyades with 292 stars (36 contaminants), and a following tail up to 70 pc with 237 stars (32 contaminants). A comparison with an N-body model of the cluster and its tails shows remarkably good coincidence. Five white dwarfs are found in the tails.
description: 4 pages, 4 figures
Additional file 4 of Oxidative stress gene expression, DNA methylation, and gut microbiota interaction trigger Crohn’s disease: a multi-omics Mendelian randomization study
Creators: name: Xu, Shu
name: Li, Xiaozhi
name: Zhang, Shenghong
name: Qi, Cancan
name: Zhang, Zhenhua
name: Ma, Ruiqi
name: Xiang, Liyuan
name: Chen, Lianmin
name: Zhu, Yijun
name: Tang, Ce
name: Bourgonje, Arno R.
name: Li, Miaoxin
name: He, Yao
name: Zeng, Zhirong
name: Hu, Shixian
name: Feng, Rui
name: Chen, Minhu
Publisher: name: figshare
Year: 2023
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 4: Fig. S2. Manhattan plots of colocalization between intestinal cis-eQTLs and mbQTLs. Six pairs of cis-eQTLs and mbQTLs with PPH4 > 0.5 were plotted for illustration: MUC1–CARNFORCAT.PWY, MUC1–PWWY.7237, CD40–PYRIDNUCSYN.PWY, CD40–PWY.5101, CD40–PWY.0845 and PRKAB1–P164.PWY. All microbial pathways were annotated by MetaCyc database ( https://metacyc.org/ ). The x-axis shows the chromosomal positions while the y-axis indicates the –log10 P values of SNPs.
OSPRay Studio: Enabling Multi-Workflow Visualizations with OSPRay
Creators: name: Sharma, Isha
name: DeMarle, Dave
name: Hota, Alok
name: Cherniak, Bruce
name: Günther, Johannes
Publisher: name: The Eurographics Association
Year: 2021
Subjects: Computing methodologies
Rendering
Software and its engineering
Designing software

description: There are a number of established production ready scientific visualization tools in the field today including ParaView [Aya15], VisIt [CBW*11] and EnSight [Ans]. However, often they come with well defined core feature sets, established visual appearance characteristics, and steep learning curves – especially for software developers. They have vast differences with other rendering applications such as Blender or Maya (known for their high-quality rendering and 3D content creation uses) in terms of design and features, and have over time become monolithic in nature with difficult to customize workflows [UFK*89]. As such a multi-purpose visualization solution for Scientific, Product, Architectural and Medical Visualization is hard to find. This is a gap we identify; and with this paper we present the idea of a minimal application called OSPRay Studio, with a flexible design to support high-quality physically-based rendering and scientific visualization workflows. We will describe the motivation, design philosophy, features, targeted use-cases and real-world applications along with future opportunities for this application.
description: VisGap - The Gap between Visualization Research and Visualization Software
description: Session 1
description: 1
description: 8
description: Isha Sharma, Dave DeMarle, Alok Hota, Bruce Cherniak, and Johannes Günther
description: CCS Concepts: Computing methodologies --> Rendering; Software and its engineering --> Designing software
Property-Based Testing for Visualization Development
Creators: name: Stegmaier, Michael
name: Engel, Dominik
name: Olbrich, Jannik
name: Ropinski, Timo
name: Tichy, Matthias
Publisher: name: The Eurographics Association
Year: 2021
Subjects: Human centered computing
Visualization toolkits
Software and its engineering
Software verification and validation

description: As the testing capabilities of current visualization software fail to cover a large space of rendering parameters, we propose to use property-based testing to automatically generate a large set of tests with different parameter sets. By comparing the resulting renderings for pairs of different parameters, we can verify certain effects to be expected in the rendering upon change of a specific parameter. This allows for testing visualization algorithms with a large coverage of rendering parameters. Our proposed approach can also be used in a test-driven manner, meaning the tests can be defined alongside the actual algorithm. Lastly, we show that by integrating the proposed concepts into the existing regression testing pipeline of Inviwo, we can execute the property-based testing process in a continuous integration setup. To demonstrate our approach, we describe use cases where property-based testing can help to find errors during visualization development.
description: VisGap - The Gap between Visualization Research and Visualization Software
description: Session 1
description: 9
description: 17
description: Michael Stegmaier, Dominik Engel, Jannik Olbrich, Timo Ropinski, and Matthias Tichy
description: CCS Concepts: Human-centered computing --> Visualization toolkits; Software and its engineering --> Software verification and validation
A new capacitive sensor for displacement measurement in a surface force apparatus
Creators: name: Restagno, F.
name: Crassous, J.
name: Charlaix, E.
name: Monchanin, M.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: We present a new capacitive sensor for displacement measurement in a Surface Forces Apparatus (SFA) which allows dynamical measurements in the range of 0-100 Hz. This sensor measures the relative displacement between two macroscopic opaque surfaces over periods of time ranging from milliseconds to in principle an indefinite period, at a very low price and down to atomic resolution. It consists of a plane capacitor, a high frequency oscillator, and a high sensitivity frequency to voltage conversion. We use this sensor to study the nanorheological properties of dodecane confined between glass surfaces.
description: 7 pages, 8 figures
Late time decay of scalar, electromagnetic, and gravitational perturbations outside rotating black holes
Creators: name: Barack, Leor
Publisher: name: arXiv
Year: 1999
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: We study analytically, via the Newman-Penrose formalism, the late time decay of scalar, electromagnetic, and gravitational perturbations outside a realistic rotating (Kerr) black hole. We find a power-law decay at timelike infinity, as well as at null infinity and along the event horizon (EH). For generic initial data we derive the power-law indices for all radiating modes of the various fields. We also give an exact analytic expression (accurate to leading order in 1/t) for the r-dependence of the late time tail at any r. Some of our main conclusions are: (i) For generic initial data, the late time behavior of the fields is dominated by the mode l=|s| (with s being the spin parameter), which dies off at fixed $r$ as $t^{-2|s|-3}$ --- as in the Schwarzschild background. (ii) However, other modes admit decay rates slower than in the Schwarzschild case. (iii) For s>0 fields, non-axially symmetric modes dominate the late time behavior along the EH. These modes oscillate along the null generators of the EH.
description: 48 pages, REVTeX; Accepted for publication in Physical Review D. (Some typos corrected.)
Effects of pressure on diffusion and vacancy formation in MgO from non-empirical free-energy integrations
Creators: name: Ita, Joel
name: Cohen, Ronald E.
Publisher: name: arXiv
Year: 1997
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: The free energies of vacancy pair formation and migration in MgO were computed via molecular dynamics using free-energy integrations and a non-empirical ionic model with no adjustable parameters. The intrinsic diffusion constant for MgO was obtained at pressures from 0 to 140 GPa and temperatures from 1000 to 5000 K. Excellent agreement was found with the zero pressure diffusion data within experimental error. The homologous temperature model which relates diffusion to the melting curve describes well our high pressure results within our theoretical framework.
description: 4 pages, latex, 1 figure, revtex, submitted to PRL
A Simplified Cellular Automaton Model for City Traffic
Creators: name: Simon, Patrice
name: Nagel, Kai
Publisher: name: arXiv
Year: 1998
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: We systematically investigate the effect of blockage sites in a cellular automaton model for traffic flow. Different scheduling schemes for the blockage sites are considered. None of them returns a linear relationship between the fraction of ``green'' time and the throughput. We use this information for a fast implementation of traffic in Dallas.
description: 12 pages, 18 figures. submitted to Phys Rev E
MOESM1 of Can public health policies on alcohol and tobacco reduce a cancer epidemic? Australia's experience
Creators: name: Jiang, Heng
name: Livingston, Michael
name: Room, Robin
name: Gan, Yong
name: English, Dallas
name: Chenhall, Richard
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: Cancer

description: Additional file 1. Search strategy. Summary of key public health policies on alcohol and tobacco and other intervention events in Australia between 1911 and 2013.. Description of cancer mortality data (ICD-10) and description of cancer mortality data used in the study were summarized in the file. Development of dummy variables for key public health policies or events. Test for stationarity. Estimates of ARIMA models on the relationships of alcohol and tobacco policy with alcohol and tobacco consumption. Alcohol and tobacco consumption (Age 15+) and skin cancer mortality in Australia.
Theory of a magnetic microscope with nanometer resolution
Creators: name: Johansson, Peter
name: Apell, S. Peter
name: Penn, D. R.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Condensed Matter (cond-mat)
subject: FOS: Physical sciences

description: We propose a theory for a type of apertureless scanning near field microscopy that is intended to allow the measurement of magnetism on a nanometer length scale. A scanning probe, for example a scanning tunneling microscope (STM) tip, is used to scan a magnetic substrate while a laser is focused on it. The electric field between the tip and substrate is enhanced in such a way that the circular polarization due to the Kerr effect, which is normally of order 0.1% is increased by up to two orders of magnitude for the case of a Ag or W tip and an Fe sample. Apart from this there is a large background of circular polarization which is non-magnetic in origin. This circular polarization is produced by light scattered from the STM tip and substrate. A detailed retarded calculation for this light-in-light-out experiment is presented.
description: 17 pages, 8 figures
Additional file 7: of The CTLA-4 x OX40 bispecific antibody ATOR-1015 induces anti-tumor effects through tumor-directed immune activation
Creators: name: Kvarnhammar, Anne
name: Veitonmäki, Niina
name: Hägerbrand, Karin
name: Dahlman, Anna
name: Smith, Karin
name: Fritzell, Sara
name: Schantz, Laura
name: Thagesson, Mia
name: Werchau, Doreen
name: Smedenfors, Kristine
name: Johansson, Maria
name: Rosén, Anna
name: Åberg, Ida
name: Winnerstam, Magnus
name: Nyblom, Eva
name: Barchan, Karin
name: Furebring, Christina
name: Norlén, Per
name: Ellmark, Peter
Publisher: name: figshare
Year: 2019
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer

description: Figure S5. Anti-tumor effect of ATOR-1015 in hOX40tg mice bearing CT26 colon carcinoma. (DOCX 100 kb)
A Hamiltonian Approach to the Mass of Isolated Black Holes
Creators: name: Beetle, Christopher
name: Fairhurst, Stephen
Publisher: name: arXiv
Year: 1999
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Boundary conditions defining a non-rotating isolated horizon are given in Einstein-Maxwell theory. A spacetime representing a black hole which itself is in equilibrium but whose exterior contains radiation admits such a horizon. Inspired by Hamiltonian mechanics, a (quasi-)local definition of isolated horizon mass is formulated. Although its definition does not refer to infinity, this mass takes the standard value in a Reissner-Nordstrom solution. Furthermore, under certain technical assumptions, the mass of an isolated horizon is shown to equal the future limit of the Bondi energy.
description: 5 pages, LaTeX 2.09, 1 eps figure. To appear in the proceedings of the Eighth Canadian Conference on General Relativity and Relativistic Astrophysics
MOESM2 of Can public health policies on alcohol and tobacco reduce a cancer epidemic? Australia's experience
Creators: name: Jiang, Heng
name: Livingston, Michael
name: Room, Robin
name: Gan, Yong
name: English, Dallas
name: Chenhall, Richard
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2. STROBE checklist.
Additional file 8: of The CTLA-4 x OX40 bispecific antibody ATOR-1015 induces anti-tumor effects through tumor-directed immune activation
Creators: name: Kvarnhammar, Anne
name: Veitonmäki, Niina
name: Hägerbrand, Karin
name: Dahlman, Anna
name: Smith, Karin
name: Fritzell, Sara
name: Schantz, Laura
name: Thagesson, Mia
name: Werchau, Doreen
name: Smedenfors, Kristine
name: Johansson, Maria
name: Rosén, Anna
name: Åberg, Ida
name: Winnerstam, Magnus
name: Nyblom, Eva
name: Barchan, Karin
name: Furebring, Christina
name: Norlén, Per
name: Ellmark, Peter
Publisher: name: figshare
Year: 2019
Subjects: subject: Cell Biology
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer

description: Figure S6. Anti-tumor effect of ATOR-1015 in hOX40tg mice bearing PANC02 pancreas cancer. (DOCX 103 kb)
Tools for Virtual Reality Visualization of Highly Detailed Meshes
Creators: name: Jensen, Mark B.
name: Jacobsen, Egill I.
name: Frisvad, Jeppe Revall
name: Bærentzen, J. Andreas
Publisher: name: The Eurographics Association
Year: 2021
Subjects: Human centered computing
Visualization toolkits

description: The number of polygons in meshes acquired using 3D scanning or by computational methods for shape generation is rapidly increasing. With this growing complexity of geometric models, new visualization modalities need to be explored for more effortless and intuitive inspection and analysis. Virtual reality (VR) is a step in this direction but comes at the cost of a tighter performance budget. In this paper, we explore different starting points for achieving high performance when visualizing large meshes in virtual reality. We explore two rendering pipelines and mesh optimization algorithms and find that a mesh shading pipeline shows great promise when compared to a normal vertex shading pipeline.We also test the VR performance of commonly used visualization tools (ParaView and Unity) and ray tracing running on the graphics processing unit (GPU). Finally, we find that mesh pre-processing is important to performance and that the specific type of pre-processing needed depends intricately on the choice of rendering pipeline.
description: VisGap - The Gap between Visualization Research and Visualization Software
description: Session 2
description: 19
description: 26
description: Mark B. Jensen, Egill I. Jacobsen, Jeppe Revall Frisvad, and J. Andreas Bærentzen
description: CCS Concepts: Human-centered computing --> Visualization toolkits
Additional file 1: of Availability of suPAR in emergency departments may improve risk stratification: a secondary analysis of the TRIAGE III trial
Creators: name: Schultz, Martin
name: Rasmussen, Line
name: Kallemose, Thomas
name: KjĂ¸Ller, Erik
name: Lind, Morten
name: Ravn, Lisbet
name: Lange, Theis
name: KĂ¸Ber, Lars
name: Rasmussen, Lars
name: Eugen-Olsen, Jesper
name: Iversen, Kasper
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Figure S1. Flowchart of the TRIAGE III trial. The population included in these secondary analyses were patients arriving in the interventional periods, who had an available suPAR level and triage category. (PDF 123 kb)
Moving Table Magnetic Particle Imaging: A stepwise approach preserving high spatio-temporal resolution
Creators: name: Szwargulski, Patryk
name: Gdaniec, Nadine
name: Graeser, Matthias
name: Möddel, Martin
name: Griese, Florian
name: Krishnan, Kannan M.
name: Buzug, Thorsten M.
name: Knopp, Tobias
Publisher: name: arXiv
Year: 2018
Subjects: subject: Medical Physics (physics.med-ph)
subject: FOS: Physical sciences

description: Magnetic Particle Imaging (MPI) is a highly sensitive imaging method that enables the visualization of magnetic tracer materials with a temporal resolution of more than 46 volumes per second. In MPI the size of the field of view scales with the strengths of the applied magnetic fields. In clinical applications those strengths are limited by peripheral nerve stimulation, specific absorption rates, and the requirement to acquire images of high spatial resolution. Therefore, the size of the field of view is usually a few cubic centimeters. To bypass this limitation, additional focus fields and/or external object movements can be applied. In this work, the latter approach is investigated. An object is moved through the scanner bore one step at a time, while the MPI scanner continuously acquires data from its static field of view. Using a 3D phantom and dynamic 3D in vivo data it is shown that the data from such a moving table experiment can be jointly reconstructed after reordering the data with respect to the stepwise object shifts and heart beat phases.
Rotational Reconstruction of Sapphire (0001)
Creators: name: Vilfan, Igor
name: Lancon, Frederic
name: Villain, Jacques
Publisher: name: arXiv
Year: 1997
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: The structure of the $(\sqrt{31}\times \sqrt{31})R\pm9^\circ$ reconstructed phase on sapphire (0001) surface is investigated by means of a simulation based on the energy minimization. The interaction between Al adatoms is described with the semi-empirical many-body Sutton-Chen potential, corrected for the charge transfer between the metallic overlayer and the substrate. The interactions between the Al adatoms and sapphire substrate are described with a simple three-dimensional potential field which has the hexagonal periodicity of sapphire surface. Our energy analysis gave evidence that the structure which is observed at room temperature is in fact a frozen high-temperature structure. In accordance with the X-ray scattering, a hexagonal domain pattern separated by domain walls has been found. The Al adatoms, distributed in two monolayers, are ordered and isomorphic to metallic Al(111) in the domains and disordered in the domain walls. The main reason for the rotational reconstruction is the lattice misfit between the metallic Al and sapphire.
description: 15 pages with 4 eps figures in text. Uses psfig and elsart.cls (ELSEVIER Science). Submitted to Surf. Sci
Transition from inspiral to plunge in binary black hole coalescences
Creators: name: Buonanno, Alessandra
name: Damour, Thibault
Publisher: name: arXiv
Year: 2000
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: Combining recent techniques giving non-perturbative re-summed estimates of the damping and conservative parts of the two-body dynamics, we describe the transition between the adiabatic phase and the plunge, in coalescing binary black holes with comparable masses moving on quasi-circular orbits. We give initial dynamical data for numerical relativity investigations, with a fraction of an orbit left, and provide, for data analysis purposes, an estimate of the gravitational wave-form emitted throughout the inspiral, plunge and coalescence phases.
description: 52 pages, 21 figures, ReVTex, epsfig; few misprints corrected
The Gap between Visualization Research and Visualization Software in High-Performance Computing Center
Creators: name: Dang, Tommy
name: Nguyen, Ngan
name: Hass, Jon
name: Li, Jie
name: Chen, Yong
name: Sill, Alan
Publisher: name: The Eurographics Association
Year: 2021

description: Visualizing and monitoring high-performance computing centers is a daunting task due to the systems' complex and dynamic nature. Moreover, different users may have different requirements and needs. For example, computer scientists carry out data analysis as batch jobs using various models, configurations, and parameters, and they often need to manage jobs. System administrators need to monitor and manage the system constantly. In this paper, we discuss the gap between visual monitoring research and practical applicability. We will start with the general requirements for managing high-performance computing centers and then share the experiences working with academic and industrial experts in this domain.
description: VisGap - The Gap between Visualization Research and Visualization Software
description: Session 2
description: 27
description: 35
description: Tommy Dang, Ngan Nguyen, Jon Hass, Jie Li, Yong Chen, and Alan Sill
MOESM1 of Prostate Cancer-associated SPOP mutations enhance cancer cell survival and docetaxel resistance by upregulating Caprin1-dependent stress granule assembly
Creators: name: Shi, Qing
name: Zhu, Yasheng
name: Ma, Jian
name: Chang, Kun
name: Ding, Dongling
name: Bai, Yang
name: Gao, Kun
name: Zhang, Pingzhao
name: Mo, Ren
name: Feng, Kai
name: Zhao, Xiaying
name: Zhang, Liang
name: Sun, Huiru
name: Jiao, Dongyue
name: Chen, Yingji
name: Sun, Yinghao
name: Zhao, Shi-min
name: Huang, Haojie
name: Li, Yao
name: Ren, Shancheng
name: Wang, Chenji
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Cell Biology
subject: Molecular Biology
subject: Biotechnology
subject: Cancer
subject: Plant Biology
subject: Computational Biology

description: Additional file 1: Figure S1. The mRNA and protein expression of SPOP/Caprin1 in prostate cancer cells. Figure S2. Validation of SPOP/Caprin1 knockout in C4–2 cells. Figure S3. The SBC motif in Caprin1 is a degron recognized by SPOP. Figure S4. SPOP-ΔNLS mutant is constitutively localized in cytoplasm as puncta and more potent in promote Caprin1 degradation than wildtype SPOP-WT. Figure S5. SPOP knockout enhanced AS-induced SGs assembly in C4–2 cells. Figure S6. SPOP knockout enhances, while Carpin1 knockout suppresses Docetaxel-induced stress granules assembly in C4–2 cells. Figure S7. SPOP had no impact on clotrimazole-induced SG assembly. Figure S8. SPOP is dispensable for stress-induced translational arrest. Figure S9. SPOP had no impact on P-bodies assembly. Figure S10. Knockout or overexpression of Caprin1 marginally affected the growth or migration, but significantly increased stress-induced cell death in C4–2 cells. Figure S11. Validation of anti-Caprin1 antibody for IHC through using parental and Caprin1 knockout cells.
Additional file 1 of A positive feedback loop between ID3 and PPARγ via DNA damage repair regulates the efficacy of radiotherapy for rectal cancer
Creators: name: Huang, Chuanzhong
name: Wang, Ling
name: Chen, Huijing
name: Fu, Wankai
name: Shao, Lingdong
name: Zhou, Dongmei
name: Wu, Junxin
name: Ye, Yunbin
Publisher: name: figshare
Year: 2023
Subjects: Biochemistry
Medicine
Molecular Biology
Chemical Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Cancer

description: Additional file 1: Figure S1. Original picture of Fig. 1A. Figure S2. Original picture of Fig. 2A and B. Figure S3. Original picture of Fig. 3A, E and F. Figure S4. Original picture of Fig. 4A, B, C and D.
Additional file 3: of A systematic literature review of patient-reported outcome measures used in gout: an evaluation of their content and measurement properties
Creators: name: Janssen, Carly
name: Voshaar, Martijn Oude
name: Klooster, Peter Ten
name: Jansen, Tim
name: Vonkeman, Harald
name: Laar, Mart Van De
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Content of the multi- and unidimensional scales used in gout outcome studies according to the International Classification of Functioning (ICF) framework, given as the number, N, and percentage (%) of total health concepts measured. The table provides insight on the content of the patient-reported outcome instruments included in this study, based upon the ICF categories. (DOCX 18 kb)
Chiasmia simplicilinea
Creators: name: Mbata, Keith J.
name: Prins, Jurate De
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Lepidoptera
Geometridae
Chiasmia
Chiasmia simplicilinea

description: Chiasmia simplicilinea (Warren, 1905c)
COMMON NAME(S): Oblique peacock
SYNONYM(S): None.
IUCN STATUS: Not Evaluated (NE).
DISTRIBUTION: Comoros Côte d’Ivoire, Democratic Republic of Congo, Eswatini, Ethiopia, Kenya, Lesotho, Madagascar, Malawi, Mozambique, South Africa, Tanzania, Uganda, Zambia, Zimbabwe.
LOCALITY IN ZAMBIA: Kabwe, in Central Province.
LARVAL HOSTPLANT(S): Larval foodplants include Acacia mearnsi De Wild. (Fabaceae).
SOURCES: African Moths 2019; De Prins & De Prins 2022; Kŗger 2001.
description: Published as part of Mbata, Keith J. & Prins, Jurate De, 2023, Annotated checklist of moths of Zambia (Insecta: Lepidoptera), pp. 1-503 in Zootaxa 5354 (1) on page 213, DOI: 10.11646/zootaxa.5354.1.1, http://zenodo.org/record/10130434
Nasoonaria Wunderlich & Song 1995
Creators: name: Tanasevitch, Andrei V.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Linyphiidae
Nasoonaria

description: Nasoonaria Wunderlich & Song, 1995
 Type species. Nasoonaria sinensis Wunderlich & Song, 1995, by original designation.
 Species included. The genus contains five species, including the new one described below: Nasoonaria mada Tanasevitch, 2018, N. magna Tanasevitch, 2014, N. pseudoembolica Tanasevitch, 2019, N. sinensis Wunderlich & Song, 1995, and N. annam, new species.
 Distribution. Southern China, Myanmar, Thailand, Laos, Vietnam, Indonesia (Sumatra) (World Spider Catalog, 2022).
description: Published as part of Tanasevitch, Andrei V., 2022, Two new species and six new records of linyphiid spiders from Vietnam (Araneae: Linyphiidae), pp. 305-311 in Raffles Bulletin of Zoology 70 on page 308, DOI: 10.26107/RBZ-2022-0014, http://zenodo.org/record/7174861
Explosive transitions induced by interdependent contagion-consensus dynamics in multiplex networks
Creators: name: Soriano-Paños, David
name: Guo, Quantong
name: Latora, Vito
name: Gómez-Gardeñes, Jesús
Publisher: name: arXiv
Year: 2019
Subjects: subject: Physics and Society (physics.soc-ph)
subject: Adaptation and Self-Organizing Systems (nlin.AO)
subject: FOS: Physical sciences

description: We introduce a model to study the delicate relation between the spreading of information and the formation of opinions in social systems. For this purpose, we propose a two-layer multiplex network model in which consensus dynamics takes place in one layer while information spreading runs across the other one. The two dynamical processes are mutually coupled by considering that the control parameters that govern the dynamical evolution of the state of the nodes inside each layer depend on the dynamical states at the other layer. In particular, we explore the scenario in which consensus is favored by the common adoption of information while information spreading is boosted between agents sharing similar opinions. Numerical simulations together with some analytical results point out that, when the coupling between the dynamics of the two layers is strong enough, a double explosive transition, i.e. an explosive transition both for consensus dynamics and for the information spreading appears. Such explosive transitions lead to bi-stability regions in which the consensus-informed stated and the disagreement-ignorant states are both stable solutions.
description: 7 pages, 3 figures
Evidence for ubiquitous strong electron-phonon coupling in high-temperature superconductors
Creators: name: Lanzara, A.
name: Bogdanov, P. V.
name: Zhou, X. J.
name: Kellar, S. A.
name: Feng, D. L.
name: Lu, E. D.
name: Yoshida, T.
name: Eisaki, H.
name: Fujimori, A.
name: Kishio, K.
name: Shimoyama, J. -I.
name: Noda, T.
name: Uchida, S.
name: Hussain, Z.
name: Shen, Z. -X.
Publisher: name: arXiv
Year: 2001
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Coupling between electrons and phonons (lattice vibrations) drives the formation of the electron pairs responsible for conventional superconductivity. The lack of direct evidence for electron-phonon coupling in the electron dynamics of the high transition temperature superconductors has driven an intensive search for an alternative mechanism. A coupling of an electron with a phonon would result in an abrupt change of its velocity and scattering rate near the phonon energy. Here we use angle resolved photoemission spectroscopy to probe electron dynamics -velocity and scattering rate- for three different families of copper oxide superconductors. We see in all of these materials an abrupt change of electron velocity at 50-80meV, which we cannot explain by any known process other than to invoke coupling with the phonons associated with the movement of the oxygen atoms. This suggests that electron-phonon coupling strongly influences the electron dynamics in the high-temperature superconductors, and must therefore be included in any microscopic theory of superconductivity.
description: 14 pages, 4 figures
Additional file 1 of Intratympanic versus intravenous corticosteroid treatment for sudden sensorineural hearing loss in diabetic patients: proposed study protocol for a prospective, randomized superiority trial
Creators: name: Yang, Weiqiang
name: Li, Xiaoling
name: Zhong, Jiatao
name: Mei, Xueshuang
name: Liu, Hongyu
name: Yang, Le
name: Lu, Liming
name: Hu, Hongyi
Publisher: name: figshare
Year: 2020
Subjects: Medicine
Biological Sciences not elsewhere classified
Cancer
Science Policy

description: Additional file 1. SPIRIT 2013 checklist: recommended items to address in a clinical trial protocol and related documents.
String excitation inside generic black holes
Creators: name: Maeda, Kengo
name: Torii, Takashi
name: Narita, Makoto
Publisher: name: arXiv
Year: 1999
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We calculate how much a first-quantized string is excited after crossing the inner horizon of charged Vaidya solutions, as a simple model of generic black holes. To quantize a string suitably, we first show that the metric is approximated by a {\it plane-wave} metric near the inner horizon when the surface gravity of the horizon $κ_I$ is small enough. Next, it is analytically shown that the string crossing the inner horizon is excited infinitely in an asymptotically flat spacetime, while it is finite in an asymptotically de Sitter spacetime and the string can pass across the inner horizon when $κ_I<2κ:= 2 {min}\{κ_B,κ_C \}$, where $κ_B$~($κ_C$) is the surface gravity of the black hole~(cosmological) event horizon. This implies that the strong cosmic censorship holds in an asymptotically flat spacetime, while it is violated in an asymptotically de Sitter spacetime from the point of view of string theory.
description: 8 pages, REVtex, 4 figures, Submitted to PRD
NuSTAR and XMM-Newton view of the interaction between the galaxy cluster A3395 and A3395/A3391 intercluster filament
Creators: name: Tumer, Aysegul
name: Wik, Daniel R.
Publisher: name: Zenodo
Year: 2021
Subjects: clusters of galaxies, LSS, galaxy cluster evolution

description: According to large scale structure (LSS) formation scenarios, Galaxy Clusters (GCs) are thought to have formed hierarchically via mergers of smaller scale structures. Thermodynamical properties of the X-ray emitting intracluster medium are sensitive probes of these dynamical activities. In this talk, I will present the joint NuSTAR and XMM-Newton analysis of the GC A3395 (z = 0.0498) at the site where the cluster and the filament connecting A3395 and A3391 meet in projection. Although XMM-Newton detects a hot-spot in this location, which may point to accreted structures and/or internal dynamics, we find that NuSTAR does not agree with this result (possibly) due to its insensitivity to spatially varying foreground absorption that XMM-Newton suffers from. The interaction of cosmic web filaments and GCs, as we explore in our joint analysis of A3395, can help improve our understanding of the formation and growth of LSS.