cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Adoratopsylla (Adoratopsylla) antiquorum subsp. antiquorum Rothschild 1904
Creators: name: Lareschi, Marcela
name: Sanchez, Juliana
name: Autino, Analía
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Siphonaptera
Hystrichopsyllidae
Adoratopsylla
Adoratopsylla antiquorum
Adoratopsylla (adoratopsylla) antiquorum antiquorum (rothschild, 1904)

description: Adoratopsylla (Adoratopsylla) antiquorum antiquorum (Rothschild, 1904)
NHM. Brazil—Tigneti Zech. Mammalia—Didelphimorphia—Didelphidae— Didelphis aurita. Brazil; Venezuela (uncertain data); Argentina—Misiones: Parque Provincial Urugua-í. Mammalia—Rodentia—Cricetidae— Abrawayaomys chebezi. Pardiñas et al. (In press).
description: Published as part of Lareschi, Marcela, Sanchez, Juliana & Autino, Analía, 2016, A review of the fleas (Insecta: Siphonaptera) from Argentina, pp. 239-258 in Zootaxa 4103 (3) on page 242, DOI: 10.11646/zootaxa.4103.3.3, http://zenodo.org/record/262230
MOESM3 of Combined genome and transcriptome sequencing to investigate the plant cell wall degrading enzyme system in the thermophilic fungus Malbranchea cinnamomea
Creators: name: HĂźttner, Silvia
name: Nguyen, Thanh
name: Zoraide Granchi
name: Chin-A-Woeng, Thomas
name: AhrĂŠn, Dag
name: Larsbrink, Johan
name: Thanh, Vu
name: Olsson, Lisbeth
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Biotechnology
subject: Evolutionary Biology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: 60506 Virology

description: Additional file 3. Multiple and pairwise sequence alignments of M. cinnamomea ITS1-ITS2-5.8S-rRNA sequences deposited at Genbank.
Trispeleognathus Fain 1958
Creators: name: Skoracki, Maciej
name: Schmidt, Karl-Heinz
name: Marciniak, Natalia
name: Marciniak, Martyna
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Prostigmata
Ereynetidae
Trispeleognathus

description: Genus Trispeleognathus Fain, 1958
Trispeleognathus Fain, 1958b: 178, 1962a: 7, 1963b: 374.
Type species: Speleognathus striatus Crossley, 1952 by original designation.
Diagnosis. Palps with 3 segments. Hypostome with 1 pair of setae. Propodonotal shield absent. Propodonotal region with 5 pairs of setae (se absent). Hysteronotal region with 5 pairs of setae (h2 absent). Agenital setal series with 1 pair of setae. Pseudanal setal series with 2 pairs, each. Genital series with 3 pairs of setae. Pseudanal series with 2 pairs of setae. Setae 1a, 3a and 4a present. Number of leg setae: coxae 2–1–1–1, trochanters 1–1–0–0, femora 5–4–3–3, genua 4–4–3–3, tibiae 5–3–3–3. Setae situated in anterior part of tarsi I–IV reduced to rod-like microsetae.
Remarks. This monotypic genus is recorded on columbiform birds from the Afrotropical, Australian, Nearctic, and Neotropical regions (Crossley 1952; Fain 1955b; Amaral 1963, 1965; Fain & Aitken 1968; Domrow 1969; Fain & Hyland 1970, 1975; Pence & Casto 1976).
description: Published as part of Skoracki, Maciej, Schmidt, Karl-Heinz, Marciniak, Natalia & Marciniak, Martyna, 2018, A review of mites of the subfamily Speleognathinae (Acariformes: Ereynetidae) parasitizing respiratory tracts of birds in the Afrotropical region, pp. 401-440 in Zootaxa 4403 (3) on page 420, DOI: 10.11646/zootaxa.4403.3.1, http://zenodo.org/record/1212849
Climate change vulnerability and risk assessment of New Jersey’s transportation infrastructure
Creators: name: No Name Supplied
Publisher: name: No Publisher Supplied
Year: 2012

description: The primary objective of this project is to pilot Federal Highway Administration's (FHWA) Vulnerability and Risk Assessment Conceptual Model using New Jersey as a case study, providing feedback for the advancement of the Conceptual Model as well as develop a greater awareness and understanding of the potential effects of climate change on transportation infrastructure in New Jersey. The Conceptual Risk Assessment Model was developed to assist transportation agencies in identifying infrastructure at risk for exposure to climate change stressors and determining which threats carry the most significant consequences. It incorporates the following summary steps: 1. Build an inventory of relevant assets and determine which are critical; 2. Gather information on potential future climate scenarios; 3. Assess the potential vulnerability and resilience of critical assets.These three steps were performed for two study areas in New Jersey, each one of which contains key transportation assets within all three New Jersey Metropolitan Planning Organizations' (MPO) jurisdictions.
Final report: Performance review of EDCs in 2011 major storms
Creators: name: No Name Supplied
Publisher: name: No Publisher Supplied
Year: 2012

description: The purpose of this report, the Performance Review of Electric Distribution Companies (EDCs) in 2011 Major Storms, is to provide The New Jersey Board of Public Utilities  (BPU) and all other interested parties with facts, findings, data and recommendations in the areas as warranted in the preliminary report about storm event planning and emergency response and outlined in the resulting Request for Qualifications. This report provides observations regarding the actual effectiveness of New Jersey’s four (4) EDC’s preparation, response and restoration to Hurricane Irene and the October 29th snow storm, and Emergency Preparedness Partnerships' (EPPs) recommendations to improve the identified areas of weakness of each EDC’s existing inclement weather preparedness, delivery system resiliency and post-storm response policies and practices.
Novel Mechanisms of ErbB-2-Mediated Breast Cancer Metastasis
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: ErbB-2 (also known as HER-2/neu) is a cell surface growth factor that sends signals into breast cancer cells to stimulate their differentiation and proliferation. Clinical studies indicate that the erbB-2 gene is one of the most frequently altered in human cancers. This is most notable in breast cancer where erbB-2 gene amplification and overabundance occurs in approximately 30% of patients. This is associated with a more malignant and metastatic phenotype resulting in poor clinical outcome. While there is extensive evidence linking erbB-2 to the development of cancer, there remain significant unanswered questions as to how erbB-2 actually causes cell changes associated with breast cancer. We are interested in the structure of the portion of the erbB-2 protein that extends inside of cells. We want to know how specific protein segments serve to ‘activate’ so-called signaling pathways inside of breast cancer cells. And, we want to be able to measure and correlate the ‘signaling’ changes with the biological properties of cell migration in the metastasis to other parts of the body.

 Recent evidence indicates that too much erbB-2 leads to a self-activation process that involves addition of phosphate (autophosphorylation) on five tyrosine residues present in the carboxyl terminus of the protein. This could provide binding sites for other molecules to link erbB-2 to distinct signaling pathways and specific biological responses. However, the role of autophosphorylation in the development and spread of breast cancer has not been investigated. In this CBCRP-funded project we will study the relationship of erbB-2 autophosphorylation site(s) responsible for the activation of ERK and CAS/Crk signaling pathways in breast cancer cells. Our biological tests include the ability of the breast cancer cells to migrate and invade an artificial matrix compound. As control experiments we are able to alter the amount of erbB-2 in cells and introduce mutations into the protein sequence that eliminate the individual sites that can be phosphorylated.

 Results from these studies will define the role of autophosphorylation of erbB-2 in mediating metastasis of breast cancer. As more information is gained, we can better target these regions of erbB-2 and the critical signaling proteins to combat this aspect of the disease. And, this information could be applicable to erbB-2 negative breast cancer, which although lacking this growth factor may use similar biological and molecular pathways via alternate means.
Trispeleognathus striatus
Creators: name: Skoracki, Maciej
name: Schmidt, Karl-Heinz
name: Marciniak, Natalia
name: Marciniak, Martyna
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Prostigmata
Ereynetidae
Trispeleognathus
Trispeleognathus striatus

description: Trispeleognathus striatus (Crossley, 1952)
(Fig. 13)
S peleognathus striatus Crossley, 1952: 385, figs. 1–17; Fain, 1955b: 695, 1956a: 18, 1962e: 300, fig. 5. Holotype in USNM, not examined.
Boydaia striatus, Womersley 1953: 82; Cooreman 1954: 426; Amaral 1963: 91.
Speleognathus (Trispeleognathus) striatus, Fain 1958b: 178.
Trispeleognathus striatus, Fain 1962a: 9, 1985: 149; Amaral 1963: 91; Fain & Hyland 1970: 42.
Trispeleognathus (Trispeleognathus) striatus, Fain 1963c: 61, 1963d: 22; Fain & Aitken 1970: 328.
Ophthalmognathus striatus, Domrow 1969: 389; Pence & Casto 1976: 466.
Type host: Columba livia domestica Gmelin (Columbiformes: Columbidae) from USA (Texas).
Diagnosis. Palp tarsus with 3 setae (2 ventral Bi-type, 1 dorsal Sd-type), palp tibia with 1 seta (Fa-type), tarsal solenidion present. Hypostomal setae m Fa-type. Propodonotal shield absent but small network of lines on cuticle between sensillary bases present. Sensillae si SC-type, other idiosomal setae Ea-type, except ve Eb-type.
Hosts and distribution. Columbiformes (Columbidae): COlumba livia dOmestica Gmelin and StreptOpelia semitOrquata Rueppel, both from Rwanda [Southern Prov., Butare] (Fain 1956a).
Non-African hosts and distribution. Columbidae: COlumba livia dOmestica from USA (Crossley 1952), COlumbina talpacOti (Temminck) from Trinidad and Tobago (Fain & Aitken 1986) and Mexico (Fain & Hyland 1970), GeOtrygOn mOntana (Linnaeus) and LeptOtila verreauxi Bonaparte both from Brazil (Amaral 1963; Fain & Aitken 1970).
description: Published as part of Skoracki, Maciej, Schmidt, Karl-Heinz, Marciniak, Natalia & Marciniak, Martyna, 2018, A review of mites of the subfamily Speleognathinae (Acariformes: Ereynetidae) parasitizing respiratory tracts of birds in the Afrotropical region, pp. 401-440 in Zootaxa 4403 (3) on page 420, DOI: 10.11646/zootaxa.4403.3.1, http://zenodo.org/record/1212849
Adoratopsylla (Tritopsylla) intermedia subsp. intermedia Wagner 1901
Creators: name: Lareschi, Marcela
name: Sanchez, Juliana
name: Autino, Analía
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Siphonaptera
Hystrichopsyllidae
Adoratopsylla
Adoratopsylla intermedia
Adoratopsylla (tritopsylla) intermedia intermedia (wagner, 1901)

description: Adoratopsylla (Tritopsylla) intermedia intermedia (Wagner, 1901)
Unknown. Paraguay. Type host unknown. Brazil; Ecuador; Paraguay; Peru; Venezuela; Argentina—Jujuy: Tilcara, Calilegua. Salta: Orán. Tucumán: La Cocha, Tafí Viejo, Monteros. Mammalia—Didelphimorphia—Didelphidae— Lutreolina massoiai, Micoureus constantiae, Thylamys cf. cinderella, Th. sponsorius, Thylamys sp. Rodentia— Cricetidae— Phyllotis osilae. Lareschi et al. (2010).
description: Published as part of Lareschi, Marcela, Sanchez, Juliana & Autino, Analía, 2016, A review of the fleas (Insecta: Siphonaptera) from Argentina, pp. 239-258 in Zootaxa 4103 (3) on page 242, DOI: 10.11646/zootaxa.4103.3.3, http://zenodo.org/record/262230
New Jersey climate change trends and projections summary
Creators: name: No Name Supplied
Publisher: name: No Publisher Supplied
Year: 2011

description: This document is intended to provide New Jersey communities with a clear picture of the observed trends and projected future changes in the climate system. It also provides an introductory set of planning resources for adapting to climate change impacts. This document is divided into three section: Observed Climate Changes and Trends, Climate Change Projections, and Need for Climate Change Adaptation.
Mechanisms of Chemotherapy Induced Peripheral Neuropathy
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: Our understanding of the mechanisms of action of anti-cancer microtubule targeted agents (MTAs) is based almost completely upon either (i) in vitro biochemical experiments or (ii) experiments performed on cultured dividing cells treated with the drugs for short durations (hours to a couple of days). This is logical in terms of investigating their anti-cancer cell activities. However, chemotherapy-induced-peripheral neuropathy (CIPN) is a serious and common side effect of longer-term MTA treatment (weeks to months, such as in a clinical setting) that can be severe enough to be dose limiting, can require cessation of treatment and can even be life threatening. Since the affected peripheral nerves mediating severe pain are post-mitotic, the onset and progression of CIPN must result from non-mitotic effects of the MTAs. Different MTAs have different probabilities of inducing CIPN, likely because of their different mechanisms of action. However, since our understanding of MTA action is derived from analyses using either in vitro reactions or dividing cells in culture exposed to a MTA for short durations, our understanding MTA action on post-mitotic neurons for longer durations is negligible. Our current understanding does not consider the possibility of compensatory or regulatory mechanisms that come into play over longer, clinically meaningful durations. For example, recent work has demonstrated that the MTA eribulin, a microtubule depolymerizer in vitro and in short-term cell culture assays, leads to a dramatic increase in tubulin acetylation (a marker for stable MTs) in mouse sciatic nerves after two weeks of systemic administration. Here, we propose (i) to determine both the short-term and long-term effects of each of four FDA approved anti-cancer MTAs upon microtubule related components in human nociceptor nerve cells, the exact cell type that mediates CIPN and at the same time test the hypothesis that long-term and short-term effects of the drugs are distinct, and (ii) to take a more global view of CIPN by determining and analyzing the transcriptomes of short-term and long-term MTA treated human nociceptor nerve cells. This latter effort will lay the foundation for subsequent work by identifying and focusing upon transcripts whose abundance is altered by long-term MTA exposure.
Coreodrassus infletus Liu & Zhang 2023, comb. n.
Creators: name: Liu, Bo
name: Zhang, Feng
Publisher: name: Zenodo
Year: 2023
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Araneae
Gnaphosidae
Coreodrassus
Coreodrassus infletus

description: Coreodrassus infletus (O. Pickard-Cambridge, 1885) comb. n.
Drassus infletus O. Pickard-Cambridge, 1885: 7, plate. 1, fig. 4 (♀).
Drassodes infletus Simon, 1893: 361 (transferred to Drassodes); 1895: 332 (reported from Altai).
Drassodes infletus Ermolajev, 1937: 605, fig. 6 (♀, misidentified).
" Drassodes" infletus Marusik & Omelko, 2019: 285, figs 1B, 5C–D, 7C–L (♀, may belong to Echemus and can be conspecific with E. interemptor).
Type material. Holotype ♀, CHINA: Xinjiang Uygur Autonomous Region, Yarkand County, Between Yangihissar and Sirikol, March 1874. Not examined.
Description. Female. See Marusik & Omelko (2019).
Remarks. The illustrations and description of type specimen in Marusik & Omelko (2019: 285, figs 1B, 5C–D, 7C–L) clearly shows that " Drassodes " infletus resembles Coreodrassus murphyi sp. n. in epigyne structures, but differs in the large, wide, anteriorly directed FD rather than slender, laterally directed FD, which indicated that this species should belong to Coreodrassus.
Distribution. China (Yarkand).
description: Published as part of Liu, Bo & Zhang, Feng, 2023, A new species of Coreodrassus Paik, 1984 from China, with proposal of a new combination (Araneae: Gnaphosidae), pp. 288-296 in Zootaxa 5306 (2) on page 295, DOI: 10.11646/zootaxa.5306.2.8, http://zenodo.org/record/8058895
Economic impacts of climate change on New Jersey
Creators: name: No Name Supplied
Publisher: name: No Publisher Supplied
Year: 2008

description: This report identifies key economic sectors in New Jersey which are likely affected by climate change, and the main impacts to be expected for these sectors. The report provides examples of the direct economic impacts that could be experienced in the state and presents calculations of indirect effects that are triggered as impacts on individual sectors in the economy ripple through to affect others.
Boydaia Womersley 1953
Creators: name: Skoracki, Maciej
name: Schmidt, Karl-Heinz
name: Marciniak, Natalia
name: Marciniak, Martyna
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Prostigmata
Ereynetidae
Boydaia

description: Genus Boydaia Womersley, 1953
Boydaia Womersley, 1953: 82; Fain 1957b: 251, 1958a: 176, 1971: 98, 1985: 144.
Type species: Speleognathus sturni Boyd, 1948 by original designation.
Diagnosis. Hypostome with 1–2 pairs of setae. Propodonotal region with 5–6 pairs of setae (ve present or absent). Agenital and pseudanal setal series with 1–2 pairs of setae. Each trochanter of legs I and II with 1 seta.
Remarks. This cosmopolitan genus is recorded mainly from passerines, and only 6 of the 38 described species are probably secondarily associated with non-passeriform birds from the orders Caprimulgiformes, Galliformes, Falconiformes, and Psittaciformes (Fain et al. 1977; Fain 1985; Skoracki et al. 2012). The Afrotropical fauna comprises 14 species in this genus: BOydaia bradOrnis Fain, 1956, B. buphagi Fain, 1961, B. cecrOpis Fain, 1969, B. cinnyris Fain, 1969, B. falcOnis Fain, 1956, B. hirundOae Fain, 1956, B. indica Fain, 1969, B. nectarinia, Fain 1958, B. psalidOprOcnei Fain, 1956, B. pycnOnOti Fain, 1956, B. saxicOlae Fain, 1969, B. spatulata Fain, 1956, B. zOsterOpis Fain, 1963, and B. zumpti Fain, 1956.
description: Published as part of Skoracki, Maciej, Schmidt, Karl-Heinz, Marciniak, Natalia & Marciniak, Martyna, 2018, A review of mites of the subfamily Speleognathinae (Acariformes: Ereynetidae) parasitizing respiratory tracts of birds in the Afrotropical region, pp. 401-440 in Zootaxa 4403 (3) on pages 420-421, DOI: 10.11646/zootaxa.4403.3.1, http://zenodo.org/record/1212849
Agastopsylla boxi subsp. boxi
Creators: name: Lareschi, Marcela
name: Sanchez, Juliana
name: Autino, Analía
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Siphonaptera
Hystrichopsyllidae
Agastopsylla
Agastopsylla boxi
Agastopsylla boxi boxi

description: Agastopsylla boxi boxi Jordan & Rothschild, 1923
NHM. Argentina—Chubut: Leleque. Mammalia—Rodentia—Cricetidae— Abrothrix hirta. Chile; Argentina— Chubut: Cañadón de la Madera, Sierra de Tepuel, Carhué Niyeu, Estancia El Maitén, Establecimiento Gorro Frigio, Pico Salamanca. Neuquén: PN Arrayanes. Río Negro: Bariloche, Laguna Blanca. Santa Cruz: Pali Aike, Puerto Santa Cruz. Mammalia—Rodentia—Cricetidae— Abrothrix olivacea, Akodon iniscatus, Euneomys chinchilloides, Eligmodontia morgani, Geoxus valdivianus, Graomys griseoflavus, Loxodontomys micropus, Phyllotis xanthopygus, Reithrodon auritus. Sanchez & Lareschi (2013; 2014).
description: Published as part of Lareschi, Marcela, Sanchez, Juliana & Autino, Analía, 2016, A review of the fleas (Insecta: Siphonaptera) from Argentina, pp. 239-258 in Zootaxa 4103 (3) on page 242, DOI: 10.11646/zootaxa.4103.3.3, http://zenodo.org/record/262230
Additional file 3: of fLPS: Fast discovery of compositional biases for the protein universe
Creators: name: Harrison, Paul
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Comparison of annotations from the fLPS and SEG programs. (DOCX 101Â kb)
Spinopyrgus Czaja, Covich, Neubauer & Estrada-Rodriguez 2022, gen. nov.
Creators: name: Czaja, Alexander
name: Covich, Alan P.
name: Neubauer, Thomas A.
name: Estrada-Rodríguez, José Luis
name: Ávila-Rodríguez, Verónica
name: Mata, Jorge Sáenz
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Littorinimorpha
Cochliopidae
Spinopyrgus

description: Genus Spinopyrgus Czaja, Covich, Neubauer & Estrada-Rodríguez gen. nov.
ZooBank registration number: urn:lsid:zoobank.org:act: 14D420DC-E8E7-4E6B-8E34-A6A31BEC9FB8
Type species. Spinopyrgus luismaedai sp. nov., by present designation.
Diagnosis. See diagnosis of the type species (monotypic).
Etymology. The generic name is derived from the combination of two words from Latin and Greek language: spino, referring to the strong spines, and pyrgus, related to the tower-like shape.
description: Published as part of Czaja, Alexander, Covich, Alan P., Neubauer, Thomas A., Estrada-Rodríguez, José Luis, Ávila-Rodríguez, Verónica & Mata, Jorge Sáenz, 2022, A new freshwater snail genus and species (Gastropoda: Caenogastropoda, Cochliopidae) with extremely spinous shells from sub-recent spring deposits in northeastern Mexico, pp. 472-480 in Zootaxa 5169 (5) on page 474, DOI: 10.11646/zootaxa.5169.5.5, http://zenodo.org/record/6952676
Climate change and sea level rise information exchange
Creators: name: No Name Supplied
Publisher: name: No Publisher Supplied
Year: 2010

description: This white paper achieves the information exchange by profiling the current status of climate change and sea level rise activities in the five Mid-Atlantic Regional Council on the Ocean (MARCO) states. Barriers to implementation and keys to successful implementation of climate change and sea level rise adaptation measures are noted where relevant, and links to key contacts and information sources appear throughout the text.
Agastopsylla boxi subsp. gibbosa Beaucournu & Alcover 1990
Creators: name: Lareschi, Marcela
name: Sanchez, Juliana
name: Autino, Analía
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Siphonaptera
Hystrichopsyllidae
Agastopsylla
Agastopsylla boxi
Agastopsylla boxi gibbosa beaucournu & alcover, 1990

description: Agastopsylla boxi gibbosa Beaucournu & Alcover, 1990
FMR (MNHN). Argentina—Neuquén: Lago Huechulafquen. Mammalia—Rodentia—Cricetidae— Abrothrix hirta. Chile; Argentina—Neuquén: Cerro Chapelco, Lago Norquinco, Río Alumine, Río Curruhue, Río Quilquihue. Mammalia—Rodentia—Cricetidae— Abrothrix olivacea, Loxodontomys micropus, Oligoryzomys longicaudatus.
description: Published as part of Lareschi, Marcela, Sanchez, Juliana & Autino, Analía, 2016, A review of the fleas (Insecta: Siphonaptera) from Argentina, pp. 239-258 in Zootaxa 4103 (3) on page 242, DOI: 10.11646/zootaxa.4103.3.3, http://zenodo.org/record/262230
Additional file 14: of Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles
Creators: name: Kaleem Kakar
name: Zarqa Nawaz
name: Kakar, Khadija
name: Essa Ali
name: Abdulwareth Almoneafy
name: Raqeeb Ullah
name: Ren, Xue-Liang
name: Qing-Yao Shu
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: KO pathway associated with plant-pathogen interaction (K05391). The pathway map was obtained from http://www.kegg.jp/kegg/kegg1.html . Details of BoCNGC genes allocated to K05391 pathway are given in AdditionalÂ fileÂ 20. (PDF 126Â kb)
Social vulnerability to climate change: A neighborhood analysis of the Northeast U.S. megaregion
Creators: name: No Name Supplied
Publisher: name: No Publisher Supplied
Year: 2006

description: The Northeastern U.S Megaregion is the largest agglomeration of people (49 million), economic activity,and urbanized land in North America and one of the largest in the world. Population growth over thelast fifty years was complimented by extensive and intensive urban spatial development and thecorresponding increase in the total number of weather related societal impacts. The risk of exposureunder climate change will likely be experienced differently than previous natural hazards. The objectiveof this paper was to use neighborhood level data from 2000 Census to construct a comparativemegaregion index of social vulnerability to climate change. Use of a factor analysis method simplifiedour final 2& variables into clusters of six analogous components to explain &9 percent of the variabilityof the original variables. Utilizing the individual factor variances, weighting schema were attributed toeach component before their incorporation into an index of social vulnerability. Mapping the individualfactor components and the index of social vulnerability provided a foundation for analyzing spatialvariation and the hot-spots of vulnerability. Highlighting four major cities as case studies (Boston,Hartford, New York – New Jersey, and Philadelphia) provided an opportunity for closer review of thedata and allowed for demonstrating the presence of spatial heterogeneity within counties, states, andmetropolitan regions. Neighborhood variability demonstrates that different variable combinationsactually generate the social vulnerability profiles. Greater understanding of neighborhoods’ socialvulnerability will potentially shape policy interventions, foster opportunities for interdisciplinary research,and progress towards the reduction of societal impacts.
Agastopsylla pearsoni Traub 1952
Creators: name: Lareschi, Marcela
name: Sanchez, Juliana
name: Autino, Analía
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Siphonaptera
Hystrichopsyllidae
Agastopsylla
Agastopsylla pearsoni

description: Agastopsylla pearsoni Traub, 1952
NHM. Peru—Puno: Picotani. Mammalia—Rodentia—Cricetidae— Chinchillula sahamae. Peru; Chile; Argentina—Salta: Chicoana. Mammalia—Rodentia—Cricetidae— Phyllotis osilae. López Berrizbeitia et al. (2013).
description: Published as part of Lareschi, Marcela, Sanchez, Juliana & Autino, Analía, 2016, A review of the fleas (Insecta: Siphonaptera) from Argentina, pp. 239-258 in Zootaxa 4103 (3) on page 242, DOI: 10.11646/zootaxa.4103.3.3, http://zenodo.org/record/262230
Boydaia bradornis Fain 1956
Creators: name: Skoracki, Maciej
name: Schmidt, Karl-Heinz
name: Marciniak, Natalia
name: Marciniak, Martyna
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Prostigmata
Ereynetidae
Boydaia
Boydaia bradornis

description: Boydaia bradornis Fain, 1956
(Fig. 14)
Boydaia bradornis Fain, 1956b: 649, 654, fig. 29; 1963d: 57, 67, fig. 15; 1971: 98, 102, fig. 11. Holotype in RMCA, examined. Type host: Agricola pallidus griseus (Reichenow) (Passeriformes: Muscicapidae) from Rwanda.
Diagnosis. Hypostome with 2 pairs of setae. Setae ve present. Setae vi situated on same or slightly posterior to level of sensillae si. Sensillae SEa-type. Agenital and pseudanal series with 2 pairs of setae, each. Number of leg setae: coxae 2–1–1–0, trochanters 1–1–0–0, femora 7–4–3–3, genua 4–4–3–3, tibiae 5–3–3–3. All setae on tibia and genu of leg I similar in shape. In larvae, antaxial and paraxial claw pair of leg I subequal and sharp-ended.
Host and distribution. Passeriformes (Muscicapidae): AgricOla pallidus griseus (Reichenow) from Rwanda [Southern Prov., Akanyaru] (Fain 1956b).
Non-African host and distribution. Muscicapidae: Luscinia luscinia (Linnaeus) from Ukraine (Zabludovskaya 1998, 2012).
description: Published as part of Skoracki, Maciej, Schmidt, Karl-Heinz, Marciniak, Natalia & Marciniak, Martyna, 2018, A review of mites of the subfamily Speleognathinae (Acariformes: Ereynetidae) parasitizing respiratory tracts of birds in the Afrotropical region, pp. 401-440 in Zootaxa 4403 (3) on pages 421-422, DOI: 10.11646/zootaxa.4403.3.1, http://zenodo.org/record/1212849
Additional file 1: Table S1. of Characterization of skin function associated with obesity and specific correlation to local/systemic parameters in American women
Creators: name: Mori, Shinobu
name: Shiraishi, Akiko
name: Epplen, Karen
name: Butcher, Desiree
name: Murase, Daiki
name: Yasuda, Yuka
name: Murase, Takatoshi
Publisher: name: Figshare
Year: 2017
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Computational Biology

description: Additional information of materials and methods. Table S2. Skin function. Table S3. Microcirculation and hemodynamics. Table S4. Quantity of intracellular lipid in stratum corneum. (DOCX 27Â kb)
Chiliopsylla allophyla subsp. allophyla Rothschild 1915
Creators: name: Lareschi, Marcela
name: Sanchez, Juliana
name: Autino, Analía
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Siphonaptera
Hystrichopsyllidae
Chiliopsylla
Chiliopsylla allophyla
Chiliopsylla allophyla allophyla rothschild, 1915

description: Chiliopsylla allophyla allophyla Rothschild, 1915
NHM. Chile—Temuco. Mammalia—Microbiotheria—Microbiotheriidae— Dromiciops gliroides. Chile; Argentina—Río Negro. Mammalia—Microbiotheria—Microbiotheriidae— Dromiciops gliroides. Rodentia— Cricetidae— Abrothrix hirta, Abrothirx olivacea, Chelemys macronyx, Irenomys tarsalis, Loxodontomys micropus, Oligoryzomys longicaudatus. Octodontidae— Aconaemys sp.
description: Published as part of Lareschi, Marcela, Sanchez, Juliana & Autino, Analía, 2016, A review of the fleas (Insecta: Siphonaptera) from Argentina, pp. 239-258 in Zootaxa 4103 (3) on page 242, DOI: 10.11646/zootaxa.4103.3.3, http://zenodo.org/record/262230
Harold G. Hoffman campaign advertisement
Creators: name: No Name Supplied
Publisher: name: The South Amboy Citizen
Year: 1934

description: This full-page political advertisement, from the South Amboy Citizen on May 11, 1934, promotes Republican Harold G. Hoffman's gubernatorial bid in New Jersey.  The ad features a quote " 'New Jersey's Most Outstanding Man in Public Life' " and slogan "South Amboy's Favorite Son" while reminding readers to vote for him in the primary election on May 15.  Also included are a picture of Hoffman and a list of individual and corporate campaign sponsors.
Additional file 6: of The effectiveness of community-based coordinating interventions in dementia care: a meta-analysis and subgroup analysis of intervention components
Creators: name: Backhouse, Amy
name: Obioha Ukoumunne
name: Richards, David
name: McCabe, Rose
name: Watkins, Ross
name: Dickens, Chris
Publisher: name: Figshare
Year: 2017
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology

description: Publication bias â   all of the funnel plots to assess publication bias for each outcome measure. (DOCX 144Â kb)
Boydaia buphagi Fain 1961
Creators: name: Skoracki, Maciej
name: Schmidt, Karl-Heinz
name: Marciniak, Natalia
name: Marciniak, Martyna
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Prostigmata
Ereynetidae
Boydaia
Boydaia buphagi

description: Boydaia buphagi Fain, 1961
Boydaia buphagi Fain, 1961a: 58, fig. 18, 19, 22, 1963d: 56, 66, 76, fig. 16, 1971: 100, 104, fig. 17. Holotype in RMCA, examined.
Type host: Buphagus africanus Linnaeus (Passeriformes: Buphagidae) from Rwanda.
Diagnosis. Hypostome with 2 pairs of setae. Setae ve present. Setae vi situated posterior to level of setae si.
Sensillae rod-like. Agenital series with 2 pairs of setae. Pseudanal series with 1 pair of setae. Number of leg setae: coxae 2–1–1–1, trochanters 1–1–0–0, femora 6–4–3–2, genua 4–4–3–3, tibiae 5–3–3–3. All setae on genu and tibia of leg I similar in shape. In larvae, antaxial and paraxial claws of leg I long, subequal, and sharp-ended.
Host and distribution. Passeriformes (Buphagidae): Buphagus africanus Linnaeus from Rwanda [Southern Prov., Butare] (Fain 1961a).
description: Published as part of Skoracki, Maciej, Schmidt, Karl-Heinz, Marciniak, Natalia & Marciniak, Martyna, 2018, A review of mites of the subfamily Speleognathinae (Acariformes: Ereynetidae) parasitizing respiratory tracts of birds in the Afrotropical region, pp. 401-440 in Zootaxa 4403 (3) on pages 422-423, DOI: 10.11646/zootaxa.4403.3.1, http://zenodo.org/record/1212849
Additional file 1: of Comparison of the efficacy and safety of FP-1201-lyo (intravenously administered recombinant human interferon beta-1a) and placebo in the treatment of patients with moderate or severe acute respiratory distress syndrome: study protocol for a randomized controlled trial
Creators: name: Bellingan, Geoff
name: Brealey, David
name: Mancebo, Jordi
name: Mercat, Alain
name: NicolĂ˛ Patroniti
name: PettilĂ¤, Ville
name: Quintel, Michael
name: Jean-Louis Vincent
name: Maksimow, Mikael
name: Jalkanen, Markku
name: Piippo, Ilse
name: V. Ranieri
Publisher: name: Figshare
Year: 2017
Subjects: subject: Biochemistry
subject: Medicine
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: FOS: Biological sciences

description: SPIRIT Checklist. (PDF 172Â kb)
Harnessing the immune system to eliminate glioma stem cells
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: Stem-like tumor propagating cells (TPCs) in glioblastoma utilize a polo-like-kinase 1 (Plk1)-controlled polarity checkpoint to divide asymmetrically to self-renew and generate heterogeneous tumor cells. TPCs are sensitive to Plk1 inhibition but exhibit intrinsic resistance not only to standard therapy, consisting of radiation and temozolomide, but also to small molecule inhibitors of MAPK signaling. MAPK signaling is frequently upregulated in glioblastoma in part due to a mutation in BRAF kinase, BRAFV600E. The programmed death-ligand 1 PD-L1, a negative regulator of T cell proliferation, is expressed on the surface of TPCs, which is thought to mediate immune suppression. Durable clinical anti-tumor responses are therefore expected from emerging immune therapies, including anti-PD-L1 antibody therapy, in combination with MAPK pathway inhibitors. To maximize the efficacy of novel immune therapies, the responses of TPCs to immune checkpoint inhibition needs to be elucidated. We propose that by combining anti-PD-L1 antibodies with MAPK pathway and Plk1 inhibitors in tumors with elevated MAPK signaling, the immune suppressive activity of TPCs will be reduced and tumor growth will be inhibited more effectively than with small molecule inhibitor therapy alone. While we have worked on BRAFV600E glioblastoma for several years, the study of the immune system interactions with TPCs and tumor cells are novel to the Petritsch lab. Using our novel syngeneic mouse models of glioblastoma, we will assess the effects of immune checkpoint inhibitor inhibition (ICI) on TPC, non-TPC tumor cells as well as tumor-resident immune cells alone and in combination with standard and small molecule inhibitors (MEKi, Plk1i) (aim 1). Mechanisms of resistance will be explored by single cell RNA sequencing analyses of the TPCs, which survive ICI therapy in mouse models (aim2). Upon completion of this aim, we will have determined if inhibiting immune checkpoint inhibitors such as PD-L1 and CTLA-4 in combination with small molecule inhibitors block tumor growth more effectively than either regimen alone. The data from the single cell analyses study will determine whether resistance to occurs due to transcriptional upregulation of alternative checkpoint inhibitors and other pathways, which prevent MAPK addiction. The studies combined will allow us to develop better anti-gliobastoma treatment regimens.
Tomocerina Yosii 1955
Creators: name: Yu, Daoyuan
name: Man, Le Cong
name: Deharveng, Louis
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Entognatha
Collembola
Tomoceridae
Tomocerina

description: Genus Tomocerina Yosii, 1955
Diagnosis
Small to moderate sized Tomocerinae, usually less than 2 mm in length; body colour pale to light grey, seldom dark; antennae usually much shorter than body; eyes at most 6+6; trochantero-femoral organ with 1, 1 or more chaetae; dens of furca basally without outer strong chaetae or inner large differentiated scales; shape of dental spines from simple to compound; mucro with two dorsal lamellae and two basal teeth, outer basal tooth without corner toothlet. Widely distributed in Northern Hemisphere.
description: Published as part of Yu, Daoyuan, Man, Le Cong & Deharveng, Louis, 2016, Tomoceridae (Collembola, Entomobryomorpha) from the southern Annamitic cordillera: redescription of Tomocerus ocreatus Denis, 1948 and description of a new species of Tomocerina Yosii, 1955, pp. 1-14 in European Journal of Taxonomy 176 on page 8, DOI: 10.5852/ejt.2016.176, http://zenodo.org/record/3832758
MOESM7 of Combined genome and transcriptome sequencing to investigate the plant cell wall degrading enzyme system in the thermophilic fungus Malbranchea cinnamomea
Creators: name: HĂźttner, Silvia
name: Nguyen, Thanh
name: Zoraide Granchi
name: Chin-A-Woeng, Thomas
name: AhrĂŠn, Dag
name: Larsbrink, Johan
name: Thanh, Vu
name: Olsson, Lisbeth
Publisher: name: Figshare
Year: 2017
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Plant Biology

description: Additional file 7. GO classification of annotated proteins in M. cinnamomea FCH 10.5.
Chiliopsylla allophyla subsp. tonnii Beaucournu & Alcover 1990
Creators: name: Lareschi, Marcela
name: Sanchez, Juliana
name: Autino, Analía
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Siphonaptera
Hystrichopsyllidae
Chiliopsylla
Chiliopsylla allophyla
Chiliopsylla allophyla tonnii beaucournu & alcover, 1990

description: Chiliopsylla allophyla tonnii Beaucournu & Alcover, 1990
FMR (MNHN). Argentina—Neuquén: Lago Huechulafquen. Mammalia—Rodentia—Cricetidae— Abrothrix hirta. Argentina—Neuquén: Cerro Chapelco, Lagos Curruhue, Ruca Malen, Termas de Lauhenco. Mammalia— Microbiotheria—Microbiotheriidae— Dromiciops gliroides. Rodentia—Cricetidae— Oligoryzomys longicaudatus.
description: Published as part of Lareschi, Marcela, Sanchez, Juliana & Autino, Analía, 2016, A review of the fleas (Insecta: Siphonaptera) from Argentina, pp. 239-258 in Zootaxa 4103 (3) on page 243, DOI: 10.11646/zootaxa.4103.3.3, http://zenodo.org/record/262230
End-of-Life Care for Cancer Patients in the United States
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: The United States offers government-financed health insurance for the elderly, allowing studies comparing care at the end-of-life for cancer patients. Previous research has shown that lung cancer patients use extensive end-of-life care. This amounts to millions of dollars being wasted to provide care that is neither clinically indicated nor desired by patients. Research discovering services that are more costly and less effective at producing what patients want are useful for policy makers, oncology clinicians and cancer patients. More research is needed to explore whether the quality of care for people at the end-of-life is improving through time, and if not, areas in which we can direct improvement efforts. With growing recognition of palliative care’s place in oncology, it is vital to ascertain whether the knowledge of good end-of-life care is being translated into the practice of end-of-life care. In this proposed research, we will compare patterns of end-of-life care for elderly (>65 years of age) lung cancer patients who died of cancer during 1999-2001 vs 2009-2011. Lung cancer is an awful disease with a fearsome mortality rate. As such, high quality end-of-life care is of utmost importance. We will evaluate end-of-life care using the National Cancer Institute Surveillance, Epidemiology and End Results (SEER)–Medicare data, a linkage of patient records from the SEER cancer registries with their Medicare enrollment and claims files. The SEER registries collect demographic and clinical information for each patient including data for each occurrence of a primary incident cancer, date of diagnosis, follow-up vital status, and date and cause of death. The Medicare data, include claims for each beneficiary with fee-for-service coverage, with information about chemotherapy use and reduced emergency room (ER) visits and hospital use. We will estimate utilization rates per person-months adjusting for demographic differences. This research will provide evidence about the quality of end-of-life cancer care. Improvements in quality of care in the months before death will be evidenced by decreased rates of chemotherapy use and reduced ER and hospital use. In addition, we will assess quality of end-of-life care by sociodemographic factors to identify disparities.
MicroRNA-mediated differentiation of high-grade glioma
Creators: name: University Of California Office Of The President
Publisher: name: University of California Office of the President
publisherIdentifier: https://ror.org/00dmfq477
publisherIdentifierScheme: ROR
Year: 2024

description: Glioma is the most common primary malignant brain tumor, with high-grade glioblastoma (GBM) among the most aggressive cancers in children and adults. Despite aggressive surgery, radiotherapy, and treatment with the alkylating agent temozolomide, the prognosis for GBM patients is dismal with an average survival of 12-15 months. Standard of care treatment successfully eliminates the majority of GBM cells in individual tumors, but fails to target minor cell populations displaying neural stem cell (NSC) properties. Transcriptomal subgroups of classical and mesenchymal GBMs show a NSC signature, including expressing of the transcription factor SOX9, and frequently express cancer-causing genes that act through the mitogen-activated protein kinase (MAPK) pathway. Oncogenic activation of the MAPK pathway blocks neurogenesis of NSCs and initiates GBM formation. Is it possible that restoration of down-stream effectors of the MAPK signaling pathway can turn tumor cells into neurons and reduce GBM aggressiveness? We hypothesize that normal neurogenesis is hijacked to drive tumor growth in SOX9-expressing GBMs, and that reactivating neurogenesis can reduce tumor growth and sensitize tumors to therapy. We propose that the neuronal determinant microRNA-124 (miR-124), a small non-coding RNA, is a critical down-stream effector of oncogenic MAPK activation, and when reinstated, will restore neurogenesis and reduce GBM aggressiveness. To address the hypothesis, we have generated novel reagents to test whether miR-124 overexpression reactivates neurogenesis to block initiation, progression, and resistance to radiotherapy and TMZ treatment in GBMs. In murine and patient-derived primary GBMs, we will in aim 1 we will clarify whether MAPK inhibition or miR-124 overexpression regulate SOX9 expression, stemness, and neuronal differentiation in tumorsphere cultures. We will also perform miRNA profiling following MAPK inhibition. We will then in aim 2 test whether MAPK inhibition or miRNA overexpression DNA response, DNA repair, proliferation, apoptosis, and differentiation in three human GBM tumorsphere cultures. Finally, we will test whether MAPK inhibition or miRNA-124 overexpression sensitize tumor cells to radiotherapy or TMZ treatment in GBM xenografts. Our work will manifest the MAPK-miR-124 axis as a driver of aggressiveness in SOX9-expressing GBMs, and when reactivated will turn tumor cells into neurons, ultimately improving the overall outcome in these GBM patients.
Neotyphloceras chilensis Jordan 1936
Creators: name: Lareschi, Marcela
name: Sanchez, Juliana
name: Autino, Analía
Publisher: name: Zenodo
Year: 2016
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Siphonaptera
Hystrichopsyllidae
Neotyphloceras
Neotyphloceras chilensis

description: Neotyphloceras chilensis Jordan, 1936
NHM. Chile—Valparaíso. Mammalia—Didelphimorphia—Didelphidae— Thylamys elegans. Chile; Peru; Argentina—Neuquén: Lago Curruhue Chico. Río Negro. Mammalia—Rodentia—Octodontidae— Octodon bridgesi. Neotyphloceras crassispina chilensis was redescribed and elevated to specific status by Sanchez et al. (2012).
description: Published as part of Lareschi, Marcela, Sanchez, Juliana & Autino, Analía, 2016, A review of the fleas (Insecta: Siphonaptera) from Argentina, pp. 239-258 in Zootaxa 4103 (3) on page 243, DOI: 10.11646/zootaxa.4103.3.3, http://zenodo.org/record/262230