cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Undophomorpha Xue & Zhang 2018, gen. nov.
Creators: name: Xue, Qingquan
name: Zhang, Yalin
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Cicadellidae
Undophomorpha

description: Undophomorpha gen. nov.
Type species: Undophomorpha glauctata sp. nov.
Robust, olivaceous to yellow. Head wider than pronotum. Coronal suture short, crown finely rugose, with median length slightly longer than length next to eyes. Face slightly wider than long; lateral frontal sutures strongly curved before reaching ocelli; ocelli closer to eyes than to midline and near midheight of eyes in facial view; gena lateral margin slightly concave, with short seta adjacent to corresponding eye; lora broad; rostrum apical half broad, not reaching hind coxae; anteclypeus abruptly widened near apex, lateral margin concave; (Fig. 2D). Pronotum anterior and posterior margin very slightly curved, shagreen. Combined length of mesoscutum and scutellum longer than pronotum (Fig. 2C). Forewing with 4 apical and 2 subapical cells, m-cu1 vein and r-m1 crossveins present, outer apical cell largest; clavus with two veins poorly delimited (Fig. 2E). Fore femur with few short and fine setae. Fore tibia with dense stout and long AV and PV setae on distal half, several fine and long setae on basal half. Hind tibia with 18–20 setae on row PD, 7 setae on AD and 7 setae on apical half of AV. Hind femur with 2+1 apical setae. Hind basitarsus with two platellae.
Male genitalia. Male pygofer dorsal margin with large apodeme; triangularly produced posteriorly. Segment X with pair of basolateral processes extended ventrad into genital capsule (Fig. 5A). Connective fused with aedeagus. Style articulated directly to base of fused connective/aedeagus, slender, slightly curved dorsad distally, apical half with short setae on dorsal margin, apex narrow and bluntly rounded (Fig. 5D). Aedeagal shaft long and moderately slender in lateral view, compressed, apex bifurcate, very slender in posterior view, gonopore between dorsal and ventral apical extensions of shaft; dorsal apodeme V-shaped in ventral view (Figs. 5B–C).
Distribution. Malaysia (Sarawak).
Etymology. The generic name is an arbitrary combination of letters. The gender is feminine.
Remarks. This new genus can be distinguished from other idiocerine genera by the connective fused with the aedeagus, and gonopore situated in a deep distal cleft of the shaft.
description: Published as part of Xue, Qingquan & Zhang, Yalin, 2018, Two new genera and species of the leafhopper tribe Idiocerini (Hemiptera: Cicadellidae) and redescription of the type species of Paraidioscopus, pp. 185-193 in Zootaxa 4472 (1) on pages 187-188, DOI: 10.11646/zootaxa.4472.1.11, http://zenodo.org/record/1439984
Undophomorpha glauctata Xue & Zhang 2018, sp. nov.
Creators: name: Xue, Qingquan
name: Zhang, Yalin
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Cicadellidae
Undophomorpha
Undophomorpha glauctata

description: Undophomorpha glauctata sp. nov.
(Figs. 2, 5)
Description. Length (including wings): male 5.4 mm.
Body stramineous. Crown yellowish green, with large black spot on either side of midline close to eyes. Face greenish, except dark green basally and ocelli black (Fig. 2D). Pronotum yellowish green anteriorly and dark green posteriorly. Mesoscutum black basomedially, lateral margin yellowish green, scutellum yellowish green (Fig. 2C). Forewing brown, veins dark brown, claval area green (Fig. 2E).
Male genitalia. Segment X process apex bifid, broad medially. Subgenital plate slender, with dense fine setae on dorsal margin and apex of ventral margin, shorter than pygofer (Fig. 5A). Aedeagus apex upper part broad, ventral part thin, dorsal apodeme undeveloped; shaft very slender in ventral view (Figs. 5B–C).
Etymology. The specific epithet refers to the overall coloration of the body.
Material examined. Holotype: ♂, Malaysia, Sarawak (Borneo), Lambir Hills Nat`I Park, S Miri, N4°11′53.9″ E114°02′31.4″, 2006. x.12–23. J.R. Cryan & J.M. Urban, Hg vapor light (INHS).
description: Published as part of Xue, Qingquan & Zhang, Yalin, 2018, Two new genera and species of the leafhopper tribe Idiocerini (Hemiptera: Cicadellidae) and redescription of the type species of Paraidioscopus, pp. 185-193 in Zootaxa 4472 (1) on page 188, DOI: 10.11646/zootaxa.4472.1.11, http://zenodo.org/record/1439984
Paraidioscopus tagalicus
Creators: name: Xue, Qingquan
name: Zhang, Yalin
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Cicadellidae
Paraidioscopus
Paraidioscopus tagalicus

description: Paraidioscopus tagalicus (Baker, 1915)
(Figs. 3, 6)
Idioscopus tagalicus Baker, 1915: 340, fig. 21.
Paraidioscopus tagalicus (Baker); Maldonado-Capriles, 1964: 99, figs. 28–30.
Diagnosis. Male crown and face stramineous. Head with pair of black spots on either side of midline near eyes at crown/face transition, anteclypeus concolorous with rest of face. Pronotum, mesoscutum and scutellum brown. Mesoscutum with round black marking medially. Forewing greenish yellow, clavus pale green, corium with broad dark brown streak along claval suture and costal margin dark brown near middle. Female coloration as in male but paler overall except anteclypeus black. Crown transversely strigate. Pronotum shagreen. Rostrum reaching hind coxae. Forewing with 2 subapical cells, r-m1 crossvein present. Hind tibia with 13–15 setae on row PD, 6–8 setae on AD and 4–6 setae on apical half of AV. Hind femur with 2+1 apical setae. Hind basitarsus with two platellae. Connective T-shaped, with high medial longitudinal keel. Style more or less evenly curved dorsad, with three stout and long subapical bristles on dorsal margin, ventral margin transversely rugose medially. Aedeagal shaft very slender, slightly sinuate in lateral view, apex with small hook-shaped anterodorsal extension, with pair of long slender lateral processes extended basad, nearly as long as shaft; gonopore preapical on posterior surface.
Material examined. 4♂ 1♀, Philippines, Los Banos P.L. Baker (USNM); 1♂ 1♀, Philippines, Mt. Makiling Luzon. Baker (USNM); 1♀, Philippines, Samar Island (USNM); 1♀, Philippines, Baguio Benguet Baker (USNM).
Distribution. Philippines.
Remarks. The genus Paraidioscopus Maldonado-Capriles includes three known species distributed in India and the Philippines. Paraidioscopus palawensis (Baker) was transferred to this genus by Maldonado-Capriles (1964). This species differs from the other species of Paraidioscopus in having the forewing with a m-cu1 crossvein, the aedeagal shaft short and without process and the differently shaped style. It may not belong to Paraidioscopus.
description: Published as part of Xue, Qingquan & Zhang, Yalin, 2018, Two new genera and species of the leafhopper tribe Idiocerini (Hemiptera: Cicadellidae) and redescription of the type species of Paraidioscopus, pp. 185-193 in Zootaxa 4472 (1) on pages 190-192, DOI: 10.11646/zootaxa.4472.1.11, http://zenodo.org/record/1439984
Intégration des référentiels nationaux avec les DOIs DataCite
Creators: name: Fadoua, EL MAGUIRI
Publisher: name: DataCite
Year: 2024
Subjects: DOI
PID
French
Integration
DataCiteGAP
Webinar

description: DataCite est une organisation mondiale à but non lucratif leader  qui fournit des identifiants persistants (PID) pour les résultats et les ressources de recherche. L'Ambassadeur DataCite est un programme que lancé par DataCite pour sensibiliser, favoriser la collaboration et promouvoir les meilleures pratiques au sein des  communautés locales et  régionales grâce à notre réseau de bénévoles dévoués qui s'engagent auprès de notre communauté diversifiée. Le programme d’ambassadeurs fait partie du Global Access Program (GAP) de DataCite, qui vise à améliorer l’équité, l’accès et l’adoption de l’infrastructure d’identification persistante (PID) par les communautés des pays sous-représentés, y compris les pays francophones d’Afrique.Veuillez consulter l'enregistrement de cette présentation à l'adresse suivante: https://www.youtube.com/watch?v=fkp9iuiRusY&t=2885s
Ethical and governance issues in microbiome research and symbiosis monitoring
Creators: name: Dore, Joel
Publisher: name: Zenodo
Year: 2024

description: During past decades, life sciences research has profoundly affected our view of ourselves as human beings. WP7 is dedicated to assessing the societal and ethical dimensions of microbiome research in general and the work within the IHMCSA consortium in particular. In Chapter 1, we will address the implications for microbiome research for our self-understanding as humans from a philosophical anthropological angle. This entails a mutual exposure or confrontation between microbiome research and philosophical anthropology, building on the holobiont concept. In Chapter 2, building on this, we will zoom in on the interaction of task 7.1 with other tasks and work-packages, e.g., on mutual learning between microbiome research and the humanities. Chapter 3 outlines important ethical and governance aspects of microbiome research and its applications, such as responsible promise management and the challenge of defining a healthy microbiome. The latter is taken up in Chapter 4. An important aspect of microbiome research and its ethical implications amounts to defining a “healthy” or “normal” microbiome, but while it may seem obvious that microbiome self-management and self-care strive to improve the health of our microbiome, the question how to define and determine microbiome health proves a challenge. We outline an understanding of microbiome health which moves beyond a compositional approach (adopted in most diagnostic tools for consumers) towards an understanding in terms of function, care, and relationship, in line with the holobiont concept introduced in Chapter 1. Informed by these insights, Chapter 5 (the most extensive chapter) zooms in on ethical issues of microbiome self-management. Here we will notably present and discuss the results of a mutual learning workshop entitled Our Microbial Selves organised in September 2022 (IHMCSA Milestone 14). Finally, we will recapitulate our results as input for task 7.2: the regulatory challenges of self-management tools addressed in more detail in D7.2.
Additional file 1: of A systematic review of media parenting in the context of childhood obesity research
Creators: name: Aftosmes-Tobio, Alyssa
name: Ganter, Claudia
name: Gicevic, Selma
name: Newlan, Sami
name: Simon, Christine
name: Davison, Kirsten
name: Manganello, Jennifer
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Science Policy

description: Search Terms (PubMed). (DOCX 14Â kb)
Apios americana Medik.
Creators: name: Info Flora
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Apios
Apios americana

description: Apios americana Medik.
Art ISFS: 38350 Checklist: 1004240 Fabaceae Apios Apios americana Medik.
ZusammenfassungKEINE ANGABE
Ökologie
Lebensraum Lebensraumnach Delarze & al. 2015
KEINE ANGABE
Ökologische Zeigerwerte nach Landolt & al. (2010)
BodenfaktorenKlimafaktorenSalztoleranzFeuchtezahl F--Lichtzahl L--Salzzeichen--Reaktionszahl R--Temperaturzahl T--Nährstoffzahl N--Kontinentalitätszahl K--
Nomenklatur
Gültiger Name (Checklist 2017):Apios americanaMedik.
Volksname
Deutscher Name: -- Nom français: -- Nome italiano: --
Übereinstimmung mit anderen Referenzwerken
RelationNomReferenzwerkeNo=Apios americana Medik.Checklist 201738350
= Taxon stimmt mit akzeptiertem Taxon überein (Checklist 2017)  Taxon enthält (neben anderen) auch das akzeptierte Taxon (Checklist 2017)
Kommentare aus der Checklist 2017 Neues Taxon: Gegenüber SISF-2 neu aufgenommener Neophyt. Checklist
Status Indigenat: Neophyt: nach der Entdeckung von Amerika in der Region aufgetreten (nach 1500)
Liste der gefährdeten Pflanzen IUCN(nach Walter & Gillett 1997): Nein
description: Published as part of Info Flora, 2021,
Additional file 1: of Building blocks for social accountability: a conceptual framework to guide medical schools
Creators: name: Preston, Robyn
name: Larkins, Sarah
name: Taylor, Judy
name: Judd, Jenni
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Examples of Interview guides. Examples of interview guides for faculty/staff, student, health professional and community representative interviews. (DOCX 18 kb)
Steneotarsonemus spinki Smiley 1967
Creators: name: Ganguly, Moumi
name: Mondal, Priyankar
name: Karmakar, Krishna
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Tarsonemidae
Steneotarsonemus
Steneotarsonemus spinki

description: Steneotarsonemus spinki Smiley, 1967
Diagnosis: Adult female: stigmatal opening anteriad seta v1; atrium elongated, banana shaped; Dorsal seta v1, c1, d, e, f, h sparsely barbed; distance between bases of setae sc2 more than thrice distance between bases setae v1; sejugal apodeme weakly developed, often indistinct; poststernal apodeme absent or indistinct; coxisternal setae 3b onefourth length of 3a; seta l' of femur I thickened basally and pointed apically; d small, peg-like; seta v'Ti on leg IV about one-third length of seta tc'', former serrated. Adult male: seta sc1 nearly as long as seta sc2; seta c2 reaching base of c1; seta c1 nearly as long as d; prosternal apodeme bipartite, weakly meet with sejugal apodeme; poststernal apodeme posteriorly bifurcated into apodemes 5; seta pl'' of tarsus II, l' of tibia III, pv'' of tarsus III thick, stout and blunt apically; flange on femorogenu IV nearly round, often with crinkles along the outer margin. Leg IV exhibits intraspecific variations described later.
description: Published as part of Ganguly, Moumi, Mondal, Priyankar & Karmakar, Krishna, 2022, Complementary description of three species of Steneotarsonemus (Acari: Tarsonemidae) from rice agroecosystems of Eastern India with notes on their taxonomic status, spatial distribution, intraspecific variation and species composition, pp. 501-532 in Zootaxa 5138 (5) on page 503, DOI: 10.11646/zootaxa.5138.5.1, http://zenodo.org/record/6571817
MOESM2 of Comparison of intra-individual coefficients of variation on the paired sampling data when inter-individual variations are different between measures
Creators: name: Kiyomi, Fumiaki
name: Nishikawa, Masako
name: Yoshida, Yoichiro
name: Noda, Keita
Publisher: name: Figshare
Year: 2016
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Cancer
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2. Supplemental figures for the pain intensity data (residual plots, Pâ  P plots and Cookâ  s distance against leverage/(1-leverage)).
Sátira graciosa de los quince novios: Digital edition
Creators: name: Leblanc Elina
Publisher: name: Zenodo
Year: 2024
Subjects: Spanish literature
Digital edition
XML-TEI

description: Digital edition of a Spanish pliego de cordel, published by the Andalusian printer José María Moreno (19th c.). It contains the XML-TEI file of the edition, as well as the files that led to this edition, i.e. the digital facsimiles (raw and retouched), and the transcription produced by the OCR tool Transkribus (PAGE-XML). This digital edition is a part of the research project Desenrollando el cordel / Untangling the cordel / Démêler le cordel (2020-2024), led by professor Constance Carta at the University of Geneva and supported by the philanthropic Sandoz-Monique de Meuron Family Foundation.
Steneotarsonemus furcatus De Leon 1956
Creators: name: Ganguly, Moumi
name: Mondal, Priyankar
name: Karmakar, Krishna
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Tarsonemidae
Steneotarsonemus
Steneotarsonemus furcatus

description: Steneotarsonemus furcatus De Leon, 1956
Diagnosis: Adult female: Seta v1 positioned well anteriad stigmatal openings; atrium globular, often visible as crescent shaped when oriented laterally; dorsal seta smooth and subequal in length (9–12) except c2 (16–18); distance between bases setae sc2 more than its length; sejugal apodeme reduced to crescent shaped lateral remnants; prosternal apodeme not extended beyond level of apodemes 2; poststernal apodeme short, weakly fused with apodemes 4; seta v'Ti smooth about one third length of seta tc''. Adult male: dorsal setae coarse except for v1 and c2; seta sc1 nearly twice the length sc2; setae c2 not reaching bases of c1; setae c1, d and f subequal in length; prosternal apodeme conspicuous only up to proximal ends of apodemes 4; sejugal apodeme diffused medially; poststernal apodeme weakly connected with apodemes 3 and 4 anteriorly; seta d of tibia I, l' of genu II and d of tibia II sparsely barbed; on femorogenu IV without flange; seta v'F bifurcated and dentate along the inner groove.
description: Published as part of Ganguly, Moumi, Mondal, Priyankar & Karmakar, Krishna, 2022, Complementary description of three species of Steneotarsonemus (Acari: Tarsonemidae) from rice agroecosystems of Eastern India with notes on their taxonomic status, spatial distribution, intraspecific variation and species composition, pp. 501-532 in Zootaxa 5138 (5) on page 509, DOI: 10.11646/zootaxa.5138.5.1, http://zenodo.org/record/6571817
A first and second longitudinal study of haptic icon learnability : the impact of rhythm and melody
Creators: name: Swerdfeger, Bradley Adam
Publisher: name: University of British Columbia
Year: 2010

description: The design and evaluation of haptic icons -- brief, meaningful tactile stimuli -- has been studied extensively in the research community. Haptic icons are designed to support communication of information through the often-underutilized haptic modality. However, the learnability of haptic icons has not been evaluated in an ecologically plausible, longitudinal deployment scenario. This thesis endeavours to evaluate the learnability of haptic icons in a realistic context. We assign abstract meanings based on a realistic context to a large, previously developed set of rhythmic haptic stimuli. Then, during a period of 12 sessions over 4 weeks, we train users to recognize these icons and observe identification performance under workload using a Tetris game interruption task. Icons are presented to users in sets of 7. Upon the mastery of their current 7 icons, the user graduates to a new set, but must remember previously learned icons. We discover that perceptual discriminability dominates learnability -- the semantics of the icons have very little effect. We also find evidence that design based on multidimensional scaling (MDS) is adequate for developing haptic stimulus sets, but can be quite conservative in its identification performance predictions during deployment. Haptic icon learning is characterized by a peak in difficulty after learning progresses past a single group 7 icons, which may be explained by cognitive long-term encoding and an increase in perceptual sensitivity. In addition, we present a series of heuristics for designing rhythmic haptic icons, as well as guidelines for haptic icon training and advice for hardware designers. In an attempt to increase the expressiveness and learnability of rhythmic haptic icons, we explore the addition of melody. We iteratively develop a second set of 30 melodic haptic icons using an MDS methodology. We discover that rhythm dominates user categorization of melodies. This work also results in a set of heuristics for designing melodic icons. Finally, we evaluate the learnability of this new melodic set using our previous longitudinal methodology. Our results indicate that purely rhythmic haptic icons are easier to learn than melodic haptic icons that are grouped by rhythm and are thus more viable for deployment.
Argyrolobium zanonii P. W. Ball
Creators: name: Info Flora
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Argyrolobium
Argyrolobium zanonii

description: Argyrolobium zanonii (Turra) P. W. Ball
Art ISFS: 44500 Checklist: 1004820 Fabaceae Argyrolobium Argyrolobium zanonii (Turra) P. W. Ball
ZusammenfassungKEINE ANGABE
Ökologie
Lebensraum Lebensraumnach Delarze & al. 2015
KEINE ANGABE
Ökologische Zeigerwerte nach Landolt & al. (2010)
BodenfaktorenKlimafaktorenSalztoleranzFeuchtezahl F--Lichtzahl L--Salzzeichen--Reaktionszahl R--Temperaturzahl T--Nährstoffzahl N--Kontinentalitätszahl K--
Nomenklatur
Gültiger Name (Checklist 2017):Argyrolobium zanonii(Turra) P. W. Ball
Volksname
Deutscher Name: -- Nom français: -- Nome italiano: --
Übereinstimmung mit anderen Referenzwerken
RelationNomReferenzwerkeNo=Argyrolobium zanonii (Turra) P. W. BallChecklist 201744500=Argyrolobium zanonii (Turra) P. W. BallIndex synonymique 199644500=Argyrolobium zanonii (Turra) P. W. BallSISF/ISFS 244500
= Taxon stimmt mit akzeptiertem Taxon überein (Checklist 2017)  Taxon enthält (neben anderen) auch das akzeptierte Taxon (Checklist 2017)
Status Indigenat: -
Liste der gefährdeten Pflanzen IUCN(nach Walter & Gillett 1997): Nein
description: Published as part of Info Flora, 2021,
Additional file 1: of Initial report of the osteogenesis imperfecta adult natural history initiative
Creators: name: Tosi, Laura
name: Oetgen, Matthew
name: Floor, Marianne
name: Huber, Mary
name: Kennelly, Ann
name: McCarter, Robert
name: Rak, Melanie
name: Simmonds, Barbara
name: Simpson, Melissa
name: Tucker, Carole
name: McKiernan, Fergus
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Science Policy

description: The OI Adult Natural History Initiative survey (OI-ANHI survey). (PDF 291 kb)
Sátira graciosa de los quince novios: Digital edition
Creators: name: Leblanc Elina
Publisher: name: Zenodo
Year: 2021
Subjects: Spanish literature
Digital edition
XML-TEI

description: Digital edition of a Spanish pliego de cordel, published by the Andalusian printer José María Moreno (19th c.). It contains the XML-TEI file of the edition, as well as the files that led to this edition, i.e. the digital facsimiles (raw and retouched), and the transcription produced by the OCR tool Transkribus (PAGE-XML). This digital edition is a part of the research project Desenrollando el cordel / Untangling the cordel / Démêler le cordel (2020-2022), led by the professor Constance Carta at the University of Geneva and supported by the philanthropic Sandoz-Monique de Meuron Family Foundation.
Additional file 1: of Peak shape clustering reveals biological insights
Creators: name: Cremona, Marzia
name: Sangalli, Laura
name: Vantini, Simone
name: Dellino, Gaetano
name: Pelicci, Pier
name: Secchi, Piercesare
name: Riva, Laura
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Plant Biology
subject: FOS: Biological sciences

description: Supplementary Figures and Tables. (PDF 2223 kb)
Model-based clustering for aCGH data using variational EM
Creators: name: Alain, Guillaume
Publisher: name: University of British Columbia
Year: 2009

description: DNA copy number alterations (CNAs) are genetic changes that can produce adverse effects in numerous human diseases, including cancer. Copy number variations (of which CNAs are a subset) are a common phenomenon and not much is known about the nature of many of the mutations. By clustering patients according to CNA patterns, we can identify recurrent CNAs and understand molecular heterogeneity. This differs from normal distance-based clustering that doesn’t exploit the sequential structure of the data. Our approach is based on the hmmmix model introduced by [Sha08]. We show how it can be trained with variational methods to achieve better results and make it more ﬂexible. We show how this allows for soft patient clusterings and how it partly addresses the difficult issue of determining the number of clusters to use. We compare the performance of our method with that of [Sha08] using their original benchmark test as well as with synthetic data generated from the hmmmix model itself. We show how our method can be parallelized and adapted to huge datasets.
Astragalus alopecurus Pall.
Creators: name: Info Flora
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Astragalus
Astragalus alopecurus

description: Astragalus alopecurus Pall.
Art ISFS: 53100 Checklist: 1005780 Fabaceae Astragalus Astragalus alopecurus Pall.
Bestimmungsschlüssel
ZusammenfassungKEINE ANGABE
Ökologie
Lebensraum Lebensraumnach Delarze & al. 2015
KEINE ANGABE
Ökologische Zeigerwerte nach Landolt & al. (2010)
BodenfaktorenKlimafaktorenSalztoleranzFeuchtezahl F--Lichtzahl L--Salzzeichen--Reaktionszahl R--Temperaturzahl T--Nährstoffzahl N--Kontinentalitätszahl K--
Nomenklatur
Gültiger Name (Checklist 2017):Astragalus alopecurusPall.
Volksname
Deutscher Name: -- Nom français: -- Nome italiano: --
Übereinstimmung mit anderen Referenzwerken
RelationNomReferenzwerkeNo=Astragalus alopecurus Pall.Checklist 201753100=Astragalus alopecurus Pall.Index synonymique 199653100=Astragalus alopecurus Pall.SISF/ISFS 253100
= Taxon stimmt mit akzeptiertem Taxon überein (Checklist 2017)  Taxon enthält (neben anderen) auch das akzeptierte Taxon (Checklist 2017)
Status Indigenat: -
Liste der gefährdeten Pflanzen IUCN(nach Walter & Gillett 1997): Nein
description: Published as part of Info Flora, 2021,
Sátira graciosa de los quince novios: Digital edition
Creators: name: Leblanc Elina
Publisher: name: Zenodo
Year: 2022
Subjects: Spanish literature
Digital edition
XML-TEI

description: Digital edition of a Spanish pliego de cordel, published by the Andalusian printer José María Moreno (19th c.). It contains the XML-TEI file of the edition, as well as the files that led to this edition, i.e. the digital facsimiles (raw and retouched), and the transcription produced by the OCR tool Transkribus (PAGE-XML). This digital edition is a part of the research project Desenrollando el cordel / Untangling the cordel / Démêler le cordel (2020-2022), led by the professor Constance Carta at the University of Geneva and supported by the philanthropic Sandoz-Monique de Meuron Family Foundation.
Additional file 1: of Beads-free protein immunoprecipitation for a mass spectrometry-based interactome and posttranslational modifications analysis
Creators: name: Mikula, Michal
name: Tymon Rubel
name: Karczmarski, Jakub
name: Malgorzata Statkiewicz
name: Bomsztyk, Karol
name: Ostrowski, Jerzy
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: Cancer
subject: 60506 Virology
subject: FOS: Biological sciences
subject: Cardiology

description: Figure S1. Technical characterization of IP using antibody-coated polypropylene well (A). Determination of IgG saturating amount. The UV-activated polypropylene and protein A coated (2 μg/mL) wells were incubated for 1 h with increasing amounts of anti-hnRNP K antibody (epitope #54), ranging 0.5–5 μg (with 0.5 μg increment) in 100 μL of IP buffer. Antibody containing IP-buffer was next aspirated and wells washed three times with a 100 μL of IP buffer. Well-bound antibody was eluted with 1 × Laemmli sample buffer, resolved on SDS-PAGE and silver-stained. The intensity of protein bands was analyzed densitometrically with OptiQuant (Packard Instrument) software. Data are presented as fold increase relative to 0.5 μg amount (n = 2; mean ± SD). (B) Efficacy of hnRNP K depletion with well-bound antibody. Total protein extract from 3x105 Hepa 1.6 cells was used in three consecutive IP in wells conjugated with 0.5 μg #54 antibody. Total, IP and IP flow through (Ft) samples were resolved on SDS-PAGE followed by Western blot analysis with #54 antibody (upper panel). The intensities of hnRNP K bands in Ft samples were analyzed densitometrically with OptiQuant (n = 3; mean ± SD) (lower panel). (C) Pairwise scatter plots of MS-measured peptide ion intensities in three independent IP reactions. The IP reaction was performed as in B with protein recovery from wells with 0.1 % TFA and then subjected to MS analysis. The values are log-transformed (base 10). Red points indicate peptides originating from the hnRNP K protein. (PDF 822 kb)
MOESM1 of Routine implementation costs of larviciding with Bacillus thuringiensis israelensis against malaria vectors in a district in rural Burkina Faso
Creators: name: Dambach, Peter
name: Schleicher, Michael
name: Hans-Christian Stahl
name: Issouf Traoré
name: Becker, Norbert
name: Kaiser, Achim
name: Sié, Ali
name: Sauerborn, Rainer
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Evolutionary Biology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1: Table S1. Total accrued costs in US$ for the EMIRA research project. Calculations based on 2013 costs for material and personnel using a 2013–2015 average exchange rate of US$ 1 = € 0.82.
Leitsymptom Hämatemesis
Creators: name: Krauß, Lea U.
name: Schmid, Stephan
name: Mester, Patricia
name: Utpatel, Kirsten
name: Müller-Schilling, Martina
name: Pavel, Vlad
Publisher: name: Universität Regensburg
Year: 2024
Subjects: subject: 610 Medizin

description: Eine 62-jährige Patientin wurde notfallmäßig bei Hämatemesis, arterieller Hypotonie, Anämie und hämodynamischer Instabilität auf unsere Intensivstation aufgenommen. Bekannt war eine AL-Amyloidose mit kardialer Beteiligung und Omentuminfiltration. Im Rahmen dieser erhielt die Patientin 6 Tage vor dem Ereignis den zweiten Zyklus Chemotherapie mit Daratumumab und Cyclophosphamid, Bortezomib und Dexamethason. In der Medikation fanden sich Acetylsalicylsäure (ASS) und Apixaban bei Zustand nach akuter Beinischämie links. In der Notaufnahme trat eine weitere akute Hämatemesisepisode mit einem konsekutiven Hämoglobinabfall auf. Zur hämodynamischen Stabilisierung und zur notfallmäßigen endoskopischen Untersuchung und Blutstillung erfolgte die Verlegung auf unsere Intensivstation.
Additional file 6: Figure S6. of Characterization of human papillomavirus type 16 pseudovirus containing histones
Creators: name: Kim, Hyoung
name: Hye-Lim Kwag
name: Kim, Hong-Jin
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Developmental Biology
subject: Cancer
subject: 60506 Virology

description: L2 protein contents of HPV16 PsVs from fraction I, II and III. To detect the L1 and L2 proteins, 100 or 200Â ng of PsVs was loaded per well (based on the L1 amount). The L2 protein was detected by Western blotting using the anti-RG1-4MAP mouse serum (1:500 dilution) with HRP conjugated goat anti-mouse IgG antibody (Bethyl Laboratories). The proteins on SDS-PAGE gels were visualized by silver staining. The quantities of the L2 protein per PsV particle were similar for all three types of PsV. (DOCX 153 kb)
Nueva relación de la gitana: Digital edition
Creators: name: Leblanc Elina
Publisher: name: Zenodo
Year: 2024
Subjects: Spanish literature
Digital edition
XML-TEI

description: Digital edition of a Spanish pliego de cordel, published by the Andalusian printer José María Moreno (19th c.). It contains the XML-TEI file of the edition, as well as the files that led to this edition, i.e. the digital facsimiles (raw and retouched), and the transcription produced by the OCR tool Transkribus (PAGE-XML). This digital edition is a part of the research project Desenrollando el cordel / Untangling the cordel / Démêler le cordel (2020-2024), led by professor Constance Carta at the University of Geneva and supported by the philanthropic Sandoz-Monique de Meuron Family Foundation.
Additional file 2: Table S2. of Sensitive quantification of Clostridium perfringens in human feces by quantitative real-time PCR targeting alpha-toxin and enterotoxin genes
Creators: name: Nagpal, Ravinder
name: Kiyohito Ogata
name: Tsuji, Hirokazu
name: Matsuda, Kazunori
name: Takahashi, Takuya
name: Nomoto, Koji
name: Suzuki, Yoshio
name: Kawashima, Kazunari
name: Nagata, Satoru
name: Yamashiro, Yuichiro
Publisher: name: Figshare
Year: 2015
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Physiology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified

description: Quantitative data of C. perfringens count in stool samples from healthy infants and young adults by Amp-qPCR assays targeting 16S rRNA, plc and cpe genes. (PDF 52 kb)
Steneotarsonemus (Linzhangia) subfurcatus Lin and Zhang 1990, comb. nov.
Creators: name: Ganguly, Moumi
name: Mondal, Priyankar
name: Karmakar, Krishna
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Trombidiformes
Tarsonemidae
Steneotarsonemus
Steneotarsonemus subfurcatus

description: Steneotarsonemus (Linzhangia) subfurcatus Lin and Zhang, 1990 comb. nov.
Diagnosis: Adult female: Dorsal shields ornamented with faint punctations; seta v1 positioned anteriad stigmata; atrium globular; bothridial seta absent; all dorsal setae smooth except v2 which is coarse; seta sc2 conspicuously thicker than other dorsal setae; distance between bases of sc2 nearly equal to its length; seta 3b one-fourth length of 3a; sejugal apodeme reduced to small lateral remnants; prosternal apodeme posteriorly bifurcated and diffusely joins apodemes 2; poststernal apodeme broken and with distinct cleft medially; seta l' of femur I peg like and barbed; seta v'Ti sparsely barbed, about one-fourth length of seta tc''. Adult male: sc1 almost as long as setae sc2; distance between bases of sc2 nearly equal to its length; seta c2 not reaching base of c1; setae c1 not reaching bases of d; prosternal apodeme conspicuous only up to slightly above the proximal end of apodemes 2; poststernal apodeme weakly connected with apodemes 3 and 4; seta 3a thrice the length of 3b; seta l' and l'' of femur I and l'' of genu I apically blunt and sparsely barbed; seta v' of tibia II barbed; femorogenu IV without flange; seta v'F bifurcated and dentate along the inner groove.
description: Published as part of Ganguly, Moumi, Mondal, Priyankar & Karmakar, Krishna, 2022, Complementary description of three species of Steneotarsonemus (Acari: Tarsonemidae) from rice agroecosystems of Eastern India with notes on their taxonomic status, spatial distribution, intraspecific variation and species composition, pp. 501-532 in Zootaxa 5138 (5) on page 517, DOI: 10.11646/zootaxa.5138.5.1, http://zenodo.org/record/6571817
Nueva relación de la gitana: Digital edition
Creators: name: Leblanc Elina
Publisher: name: Zenodo
Year: 2021
Subjects: Spanish literature
Digital edition
XML-TEI

description: Digital edition of a Spanish pliego de cordel, published by the Andalusian printer José María Moreno (19th c.). It contains the XML-TEI file of the edition, as well as the files that led to this edition, i.e. the digital facsimiles (raw and retouched), and the transcription produced by the OCR tool Transkribus (PAGE-XML). This digital edition is a part of the research project Desenrollando el cordel / Untangling the cordel / Démêler le cordel (2020-2022), led by the professor Constance Carta at the University of Geneva and supported by the philanthropic Sandoz-Monique de Meuron Family Foundation.
Additional file 2: Figure S2. of Characterization of human papillomavirus type 16 pseudovirus containing histones
Creators: name: Kim, Hyoung
name: Hye-Lim Kwag
name: Kim, Hong-Jin
Publisher: name: Figshare
Year: 2016
Subjects: subject: Biochemistry
subject: Space Science
subject: Cell Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Developmental Biology
subject: Hematology

description: SDS-PAGE analysis of heparin chromatography fractions containing HPV16 PsVs. Mature HPV16 PsVs purified by SEC were further separated by heparin chromatography. The binding buffer for heparin chromatography contains 0.65Â M NaCl. LS, FT and W refer to loading sample, flow-through, and wash, respectively. M indicates a protein marker. The PsVs in the flow-through and wash fractions were designated fraction I. PsVs in fraction II and III were eluted from the heparin resin by successive additions of 0.8 and 1Â M NaCl. (DOCX 197 kb)
Nueva relación de la gitana: Digital edition
Creators: name: Leblanc Elina
Publisher: name: Zenodo
Year: 2022
Subjects: Spanish literature
Digital edition
XML-TEI

description: Digital edition of a Spanish pliego de cordel, published by the Andalusian printer José María Moreno (19th c.). It contains the XML-TEI file of the edition, as well as the files that led to this edition, i.e. the digital facsimiles (raw and retouched), and the transcription produced by the OCR tool Transkribus (PAGE-XML). This digital edition is a part of the research project Desenrollando el cordel / Untangling the cordel / Démêler le cordel (2020-2022), led by the professor Constance Carta at the University of Geneva and supported by the philanthropic Sandoz-Monique de Meuron Family Foundation.
Additional file 1: of Risk of MERS importation and onward transmission: a systematic review and analysis of cases reported to WHO
Creators: name: Poletto, Chiara
name: Pierre-Yves BoĂŤlle
name: Colizza, Vittoria
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: The file contains detailed information on importation event history, detailed explanation of the statistical analysis, sensitivity analysis. (PDF 6580Â kb)
Astragalus danicus Retz.
Creators: name: Info Flora
Publisher: name: Zenodo
Year: 2021
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Astragalus
Astragalus danicus

description: Astragalus danicus Retz.
Art ISFS: 53600 Checklist: 1005840 Fabaceae Astragalus Astragalus danicus Retz.
Bestimmungsschlüssel
ZusammenfassungKEINE ANGABE
Ökologie
Lebensraum Lebensraumnach Delarze & al. 2015
KEINE ANGABE
Ökologische Zeigerwerte nach Landolt & al. (2010)
BodenfaktorenKlimafaktorenSalztoleranzFeuchtezahl F--Lichtzahl L--Salzzeichen--Reaktionszahl R--Temperaturzahl T--Nährstoffzahl N--Kontinentalitätszahl K--
Nomenklatur
Gültiger Name (Checklist 2017):Astragalus danicusRetz.
Volksname
Deutscher Name: -- Nom français: -- Nome italiano: --
Übereinstimmung mit anderen Referenzwerken
RelationNomReferenzwerkeNo=Astragalus danicus Retz.Checklist 201753600=Astragalus danicus Retz.Index synonymique 199653600=Astragalus danicus Retz.Landolt 19771799=Astragalus danicus Retz.SISF/ISFS 253600
= Taxon stimmt mit akzeptiertem Taxon überein (Checklist 2017)  Taxon enthält (neben anderen) auch das akzeptierte Taxon (Checklist 2017)
Status Indigenat: -
Liste der gefährdeten Pflanzen IUCN(nach Walter & Gillett 1997): Nein
description: Published as part of Info Flora, 2021,
Additional file 1 of Breaking the computational barriers of pairwise genome comparison
Creators: name: Torreno, Oscar
name: Trelles, Oswaldo
Publisher: name: Figshare
Year: 2015
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Supplementary material. (PDF 2160 kb)
Policies and regulations for selfmanagement tools
Creators: name: Dore, Joel
Publisher: name: Zenodo
Year: 2024

description: These last years, research on human microbiome has truly flourished and raised a high interest for both healthcare professionals and citizens. We conducted an analysis of 6 kits (5 sold by companies based in Europe and 1 sold by a company based in USA) available on the market for the evaluation of faecal microbiome composition. These kits are available directly to the consumer and do not require any medical prescription. However, even if those 6 selected kits can be purchased without a medical prescription, two out of the six kits were distributed by a medical laboratory, and one of them has the CE mark. After mimicking a real and complete description of the consumers’ experience (from the purchase to the report reading) by sending one unique faecal sample to the 6 different companies, the results and interpretations received, as well as the different gaps and limitations that we identified with these tools and their associated analysis, were discussed with a panel of experts during an online workshop. The discussion led to the identification of several challenges related to these tools found in different areas, including: promotional messages by the companies, lack of transparency in the methodology employed for such analysis, reliability of the results, and medical relevance of interpretations and recommendations provided in the different reports. Then, the grey area surrounding the regulatory status of these self-management tools was also discussed among the stakeholders, including the positioning of these tools in the European market. At the end of the discussion, the experts identified a series of critical points to address in order to make these self-management kits useful and reliable for the consumer but also for the clinician and healthcare professional. Finally, they agreed on some recommendations or actions that could improve the quality and the robustness of microbiome self-management tools to avoid over-promising messages to the consumer. The need for standardization, more robust scientific evidence, qualification of microbiome-based biomarkers and a clear regulatory status in Europe are the main questions which will require attention in the near future to align laboratory developments with societal needs and thus enable translation into daily practice.
MOESM1 of Diversity of arsenite oxidase gene and arsenotrophic bacteria in arsenic affected Bangladesh soils
Creators: name: Santonu Sanyal
name: Taslin Mou
name: Chakrabarty, Ram
name: Sirajul Hoque
name: M. Hossain
name: Sultana, Munawar
Publisher: name: Figshare
Year: 2016
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: Computational Biology

description: Additional file 1: Table S1. Primer sequences used for detection of bacterial 16S rRNA gene, arsenite resistance and oxidizing genes, and corresponding annealing temperature used for PCR. Fig. S1. PCR specific amplicon of 16S rRNA (a), arsenite resistance gene arsB (b) and arsenite oxidizing gene aoxB (c) of soil total DNA. Fig. S2. RFLP groups using AluI restriction digestion of aioA gene containing clones. Fig. S3. Different fragments obtained from Alu1 enzyme digestion of the 16S rRNA gene PCR product (approx. 1400â  1450 bp) of arsenite resistant isolates. Representative groups are shown here. Uncut experimental DNA incubated under same condition was used as control. Marker used was 1 kb and 100 bp. Fig. S4. Amino acid sequence alignment (MEGA 5) of ten RFLP groups representative cloned arsenite oxidase genes from WFDSL-2 soil sample showing conserved catalytic motif. Fig. S5. Growth kinetics and corresponding oxidation of arsenite, As (III) to arsenate, As (V) by isolate (a) A1a (b) A1i.
Additional file 2: of The HCV care continuum among people who use drugs: protocol for a systematic review and meta-analysis
Creators: name: Reed, Jennifer
name: Jordan, Ashly
name: Perlman, David
name: Smith, Daniel
name: Hagan, Holly
Publisher: name: Figshare
Year: 2016
Subjects: subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: 110309 Infectious Diseases

description: Search strategy for CINAHL (via EBSCO), Embase (via Ovid), PsycInfo (via Ovid), and PubMed (via Medline).
Additional file 1: of The HCV care continuum among people who use drugs: protocol for a systematic review and meta-analysis
Creators: name: Reed, Jennifer
name: Jordan, Ashly
name: Perlman, David
name: Smith, Daniel
name: Hagan, Holly
Publisher: name: Figshare
Year: 2016
Subjects: subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: PRISMA-P 2015 Checklist.
Canto a la Bienaventura Virgen María en la visitacion a Santa Isabel: Digital edition
Creators: name: Leblanc Elina
Publisher: name: Zenodo
Year: 2024
Subjects: Spanish literature
Digital edition
XML-TEI

description: Digital edition of a Spanish pliego de cordel, published by the Andalusian printer José María Moreno (19th c.). It contains the XML-TEI file of the edition, as well as the files that led to this edition, i.e. the digital facsimiles (raw and retouched), and the transcription produced by the OCR tool Transkribus (PAGE-XML). This digital edition is a part of the research project Desenrollando el cordel / Untangling the cordel / Démêler le cordel (2020-2024), led by professor Constance Carta at the University of Geneva and supported by the philanthropic Sandoz-Monique de Meuron Family Foundation.