cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Finding Multiple Reaction Pathways of Ligand Unbinding
Creators: name: Rydzewski, J.
name: Valsson, O.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: Biological Physics (physics.bio-ph)
subject: FOS: Physical sciences

description: Searching for reaction pathways describing rare events in large systems presents a long-standing challenge in chemistry and physics. Incorrectly computed reaction pathways result in the degeneracy of microscopic configurations and inability to sample hidden energy barriers. To this aim, we present a general enhanced sampling method to find multiple diverse reaction pathways of ligand unbinding through non-convex optimization of a loss function describing ligand-protein interactions. The method successfully overcomes large energy barriers using an adaptive bias potential, and constructs possible reaction pathways along transient tunnels without the initial guesses of intermediate or final states, requiring crystallographic information only. We examine the method on the T4 lysozyme L99A mutant which is often used as a model system to study ligand binding to proteins, provide a previously unknown reaction pathway, and show that using the bias potential and the tunnel widths it is possible to capture heterogeneity of the unbinding mechanisms between the found transient protein tunnels.
Nonperturbative Renormalisation of Composite Operators in Lattice QCD
Creators: name: Gockeler, M.
name: Horsley, R.
name: Oelrich, H.
name: Perlt, H.
name: Petters, D.
name: Rakow, P. E. L.
name: Schafer, A.
name: Schierholz, G.
name: Schiller, A.
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: We investigate the nonperturbative renormalisation of composite operators in lattice QCD restricting ourselves to operators that are bilinear in the quark fields. These include operators which are relevant to the calculation of moments of hadronic structure functions. The computations are based on Monte Carlo simulations using quenched Wilson fermions.
description: LaTeX, 41 pages, 24 figures
Printing wet-on-wet: attraction and repulsion of drops on a viscous film
Creators: name: Hack, M. A.
name: Costalonga, M.
name: Segers, T.
name: Karpitschka, S. A.
name: Wijshoff, H.
name: Snoeijer, J. H.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Fluid Dynamics (physics.flu-dyn)
subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: Wet-on-wet printing is frequently used in inkjet printing for graphical and industrial applications, where substrates can be coated with a thin liquid film prior to ink drop deposition. Two drops placed close together are expected to interact via deformations of the thin viscous film, but the nature of these capillary interactions is unknown. Here we show that the interaction can be attractive or repulsive depending on the distance separating the two drops. The distance at which the interaction changes from attraction to repulsion is found to depend on the thickness of the film, and increases over time. We reveal the origin of the non-monotonic interactions, which lies in the appearance of a visco-capillary wave on the thin film induced by the drops. Using the thin-film equation we identify the scaling law for the spreading of the waves, and demonstrate that this governs the range over which interaction is observed.
description: 5 pages, 5 figures
Multiparton interactions and production of minijets in high energy hadronic collisions
Creators: name: Ragazzon, R.
name: Treleani, D.
Publisher: name: arXiv
Year: 1995
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We discuss the inclusive cross section to produce two minijets with a large separation in rapidity in high energy hadronic collisions. The contribution to the inclusive cross section from the exchange of a BFKL Pomeron is compared with the contribution from the exchange of two BFKL Pomerons, which is induced by the unitarization of the semi-hard interaction. The effect of the multiple exchange is studied both as a function of the azimuthal correlation and as a function of the transverse momentum of the observed minijets.
description: TeX file, 20 pages, 4 figures available on request
Gate-Defined Quantum Confinement in InSe-based van der Waals Heterostructures
Creators: name: Hamer, Matthew
name: Tóvári, Endre
name: Zhu, Mengjian
name: Thompson, Michael D.
name: Mayorov, Alexander
name: Prance, Jonathon
name: Lee, Yongjin
name: Haley, Richard P.
name: Kudrynskyi, Zakhar R.
name: Patanè, Amalia
name: Terry, Daniel
name: Kovalyuk, Zakhar D.
name: Ensslin, Klaus
name: Kretinin, Andrey V.
name: Geim, Andre
name: Gorbachev, Roman
Publisher: name: arXiv
Year: 2018
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Indium selenide, a post-transition metal chalcogenide, is a novel two-dimensional (2D) semiconductor with interesting electronic properties. Its tunable band gap and high electron mobility have already attracted considerable research interest. Here we demonstrate strong quantum confinement and manipulation of single electrons in devices made from few-layer crystals of InSe using electrostatic gating. We report on gate-controlled quantum dots in the Coulomb blockade regime as well as one-dimensional quantization in point contacts, revealing multiple plateaus. The work represents an important milestone in the development of quality devices based on 2D materials and makes InSe a prime candidate for relevant electronic and optoelectronic applications.
description: 13 pages, 3 figures
Exact fermion zero-mode for the new calorons
Creators: name: Chernodub, M. N.
name: Kraan, Thomas C.
name: van Baal, Pierre
Publisher: name: arXiv
Year: 1999
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We construct the fermion zero-mode for arbitrary charge one SU(n) calorons with non-trivial holonomy, both in the finite temperature context (anti-periodic boundary conditions in time) and in the Kaluza-Klein compactification context (periodic boundary conditions in time). The zero-mode is localised on one of the constituent monopoles and we discuss a relation to the Callias index theorem.
description: LATTICE99(confine) - 3p, 1 fig in 3 parts
Revisiting Flavor and CP Violation in Supersymmetric SU(5) with Right-Handed Neutrinos
Creators: name: Evans, Jason L.
name: Kadota, Kenji
name: Kuwahara, Takumi
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We revisit the minimal supersymmetric SU(5) grand unified theory with three right-handed neutrinos in which universality conditions for soft-supersymmetry breaking parameters are imposed at an input scale above the unification scale. If the Majorana masses for the neutrinos are around $10^{15}$ GeV, large mixing angles and phases in the neutrino sector lead to flavor-violation and CP-violation in the right-handed down squark and left-handed slepton sectors. Since the observed Higgs boson mass and the proton decay constraints indicate sfermions have masses larger than a few TeV, flavor and CP constraints are less restrictive. We explore the constraints on models with a universal soft-supersymmetry breaking input parameters coming from proton stability, electric dipole moments, $μ\to eγ$ decays, and the Higgs mass observed at the LHC. Regions compatible with all constraints can be found if non-zero A-terms are taken.
description: 28 pages, 4 figures, version accepted PRD
Additional file 6: of Diverse biological effects of glycosyltransferase genes from Tartary buckwheat
Creators: name: Yao, Panfeng
name: Deng, Renyu
name: Huang, Yunji
name: Stael, Simon
name: Shi, Jiaqi
name: Shi, Guanlan
name: Lv, Bingbing
name: Li, Qi
name: Dong, Qixin
name: Wu, Qi
name: Li, Chenglei
name: Chen, Hui
name: Zhao, Haixia
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Molecular Biology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy
subject: Plant Biology

description: Figure S6. Content of four kinds of flavonoids in tartary buckwheat seedlings under light treatment. Each value is the mean of 3 replicates, and error bars indicate standard deviations. (DOCX 65 kb)
Detecting coherence via spectrum estimation
Creators: name: Yu, Xiao-Dong
name: Gühne, Otfried
Publisher: name: arXiv
Year: 2018
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Coherence is a basic phenomenon in quantum mechanics and considered to be an essential resource in quantum information processing. Although the quantification of coherence has attracted a lot of interest, the lack of efficient methods to measure the coherence in experiments limits the applications. We address this problem by introducing an experiment-friendly method for coherence and spectrum estimation. This method is based on the theory of majorization and can not only be used to prove the presence of coherence, but also result in a rather precise lower bound of the amount of coherence. As an illustration, we show how to characterize the freezing phenomenon of coherence with only two local measurements for any $N$-qubit quantum systems. Our approach also has other applications in quantum information processing, such as the characterization of distillability and entanglement transformations.
description: 12 pages, 2 figures; close to the published version
Polarized J/psi production in deep inelastic scattering at HERA
Creators: name: Yuan, F.
name: Chao, K. T.
Publisher: name: arXiv
Year: 2000
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We perform a calculation on the polarization of J/psi production in deep inelastic scattering in the HERA energy range. For the inclusive production distributions, we find that the color-singlet contributions are consistent with the experimental data in the major region of z (z>0.4). Only in low z regions, there are some hints of the need of the color-octet contributions to describe the experimental data. For the polarization of J/psi in DIS processes, we find the parameter alpha changes with Q^2. Especially, at higher Q^2, difference on alpha between color-singlet and color-octet contributions become more distinctive. In the two regions of lower and larger z, the polarization parameter alpha have different features. These properties can provide important information on the polarization mechanism for J/psi production.
description: Some typos in some equations are corrected. These typos do not affect the calculation and numerical results presented in the original paper
MOESM1 of Detection of phosphorothioated (PS) oligonucleotides in horse plasma using a product ion (m/z 94.9362) derived from the PS moiety for doping control
Creators: name: Tozaki, Teruaki
name: Karasawa, Kaoru
name: Minamijima, Yohei
name: Ishii, Hideaki
name: Kikuchi, Mio
name: Hironaga Kakoi
name: Kei-Ichi Hirota
name: Kanichi Kusano
name: Shun-Ichi Nagata
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Pharmacology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Figure S1. Mass spectra of full scan and product ion scan for phosphorothioated oligonucleotides (PSOs). Figure S2. Quadratic calibration curves of phosphorothioated oligonucleotides (PSOs) in deproteined plasma. Table S1. Accuracy and reproducibility of phosphorothioated oligonucleotides (PSOs) detection.
Quantum anomalous Hall multilayers grown by molecular beam epitaxy
Creators: name: Jiang, Gaoyuan
name: Feng, Yang
name: Wu, Weixiong
name: Li, Shaorui
name: Bai, Yunhe
name: Li, Yaoxin
name: Zhang, Qinghua
name: Gu, Lin
name: Feng, Xiao
name: Zhang, Ding
name: Song, Canli
name: Wang, Lili
name: Li, Wei
name: Ma, Xu-Cun
name: Xue, Qi-Kun
name: Wang, Yayu
name: He, Ke
Publisher: name: arXiv
Year: 2018
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Quantum anomalous Hall (QAH) effect is a quantum Hall effect that occurs without the need of external magnetic field. A system composed of multiple parallel QAH layers is an effective high Chern number QAH insulator and the key to the applications of the dissipationless chiral edge channels in low energy consumption electronics. Such a QAH multilayer can also be engineered into other exotic topological phases such as a magnetic Weyl semimetal with only one pair of Weyl points. This work reports the first experimental realization of QAH multilayers in the superlattices composed of magnetically doped (Bi,Sb)$_2$Te$_3$ topological insulator and CdSe normal insulator layers grown by molecular beam epitaxy. The obtained multilayer samples show quantized Hall resistance $h/Ne$$^2$, where $h$ is the Planck's constant, $e$ is the elementary charge and $N$ is the number of the magnetic topological insulator layers, resembling a high Chern number QAH insulator.
description: 9 pages, 3 figures
Finite Size Analysis of the U(1) Phase Transition using the World-sheet Formulation
Creators: name: Baig, M.
name: Clua, J.
name: Fort, H.
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: We present a high statistics analysis of the pure gauge compact U(1) lattice theory using the the world-sheet or Lagrangian loop representation. We have applied a simulation method that deals directly with (gauge invariant) integer variables on plaquettes. As a result we get a significant amelioration of the simulation that allows to work with large lattices avoiding the metaestability problems that appear using the standard Wilson formulation.
description: 14 pages, 4 figures. REVTEX and epsf
Analysis of scientific articles "FAIRness"
Creators: name: Le Roux, Zoé
name: Sinquin, Pierre
name: Francis, Juliette
Publisher: name: Zenodo
Year: 2024

description: Presentation on FAIRness analysis of articles in the context of the module FAIR principles applied to Genome Assembly and Annotation of the master 2 of bioinformatics of the University of Rennes.
Comparing lattice Dirac operators with Random Matrix Theory
Creators: name: Farchioni, F.
name: Hip, I.
name: Lang, C. B.
Publisher: name: arXiv
Year: 1999
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We study the eigenvalue spectrum of different lattice Dirac operators (staggered, fixed point, overlap) and discuss their dependence on the topological sectors. Although the model is 2D (the Schwinger model with massless fermions) our observations indicate possible problems in 4D applications. In particular misidentification of the smallest eigenvalues due to non-identification of the topological sector may hinder successful comparison with Random Matrix Theory (RMT).
description: LATTICE99(topology and confinement), Latex2e using espcrc2.sty, 3 pages, 3 figures
Kaon-Nucleon Couplings for Weak Decays of Hypernuclei
Creators: name: Savage, M. J.
name: Springer, R. P.
Publisher: name: arXiv
Year: 1995
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We investigate the weak kaon-nucleon (NNK) S-wave and P-wave interactions using heavy baryon chiral perturbation theory. The leading 1-loop SU(3) breaking contributions to the $ppK$, $pnK$, and $nnK$ couplings are computed. We find that they suppress all NNK amplitudes by $30\%$ to $50\%$. The ratio of neutron-induced to proton-induced hypernuclear decay widths is sensitive to such reductions. It has been argued that the discrepancy between the predicted and observed P-wave amplitudes in $Δs=1$ hyperon decay results from an accidental cancellation between tree-level amplitudes, and is not a fundamental problem for chiral perturbation theory. Agreement between experimentally determined NNK P-wave amplitudes and our estimates would support this explanation.
description: uuencoded latex file with figures, 14 pages. A factor of two in the numerical values given for the p-wave amplitudes is corrected
Additional file 7: of Diverse biological effects of glycosyltransferase genes from Tartary buckwheat
Creators: name: Yao, Panfeng
name: Deng, Renyu
name: Huang, Yunji
name: Stael, Simon
name: Shi, Jiaqi
name: Shi, Guanlan
name: Lv, Bingbing
name: Li, Qi
name: Dong, Qixin
name: Wu, Qi
name: Li, Chenglei
name: Chen, Hui
name: Zhao, Haixia
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: Chemical Sciences not elsewhere classified
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: Figure S7. Expression profiles of FtUFGTs after light treatment in tartary buckwheat seedlings were analyzed by qRT-PCR. The expression levels at 0 h (no treated) were set to “1” using the 2−ΔΔCT method. Means were calculated from three repeats. (DOCX 73 kb)
The Luminosity Function of the Globular Cluster NGC 6397 Near the Limit of Hydrogen Burning
Creators: name: King, Ivan R.
name: Anderson, Jay
name: Cool, Adrienne M.
name: Piotto, Giampaolo
Publisher: name: arXiv
Year: 1997
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Second-epoch HST observations of NGC 6397 have led to the measurement of proper motions accurate enough to separate the faintest cluster stars from the field, thus extending the luminosity function of this globular cluster far enough to approach the limit of hydrogen burning on the main sequence. We isolate a sample of 1385 main-sequence stars, from just below the turnoff down to I=24.5 (M_I~12.5), which corresponds to a mass of less than 0.1 solar masses for the metallicity of this cluster. Below I=22 (M_I~10), the main-sequence luminosity function drops rapidly, in a manner similar to that predicted by theoretical models of low-mass stars near the hydrogen-burning limit.
description: Tex, 4 pages, 4 figures, 2 style files (apjlet.tex, twocolumns.tex); Astrophysical Journal Letters, accepted
Additional file 1: of SwissMTB: establishing comprehensive molecular cancer diagnostics in Swiss clinics
Creators: name: Singer, Franziska
name: Irmisch, Anja
name: Toussaint, Nora
name: Grob, Linda
name: Singer, Jochen
name: Thurnherr, Thomas
name: Beerenwinkel, Niko
name: Levesque, Mitchell
name: Dummer, Reinhard
name: Quagliata, Luca
name: Rothschild, Sacha
name: Wicki, Andreas
name: Beisel, Christian
name: Stekhoven, Daniel
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Computational Biology

description: Example SwissMTB clinical report. (PDF 212 kb)
Additional file 1: of An improved statistical model for taxonomic assignment of metagenomics
Creators: name: Yujing Yao
name: Zhezhen Jin
name: Lee, Joseph
Publisher: name: figshare
Year: 2018
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Inorganic Chemistry

description: Figure S1. | Heat maps for the representative Classes of oral metagenomics data based on the TADIP (A) model and the TAMER (B) model. Figure S2. | Heat maps for the representative Species of gut metagenomics data based on the TADIP (A) model and the TAMER (B) model. Figure S3. | Numbers of reads assigned using TAMER and TADIP for the representative Phylums of gut metagenomics data. Figure S4. | Comparison of Blast and Bowtie for the study of oral metagenomics data. Table S1. | Tables for the estimated proportion of reads assigned to representative Classes of oral metagenomics data based on the TADIP model and the TAMER model. Table S2. | Tables for the estimated proportion of reads assigned to representative Phylum of gut metagenomics data(disease)based on the TADIP model and the TAMER model. Table S3. | Tables for the estimated proportion of reads assigned to representative Phylum of gut metagenomics data(control)based on the TADIP model and the TAMER model. Supplementary Code | BLAST. Supplementary Code | Bowtie. Supplementary Code | R package for TADIP and Hypothesis Testing. (DOCX 4876 kb)
Coherent and Semiclassical States of a Charged Particle in a Constant Electric Field
Creators: name: Adorno, T. C.
name: Pereira, A. S.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The method of integrals of motion is used to construct families of generalized coherent states of a nonrelativistic spinless charged particle in a constant electric field. Families of states, differing in the values of their standard deviations at the initial time, are obtained. Depending on the initial values of the standard deviations, and also on the electric field, it turns out to be possible to identify some families with semiclassical states.
description: 14 pages
Color-singlet direct J/ψand ψ' production at Tevatron in the k_t factorization approach
Creators: name: Yuan, F.
name: Chao, K. T.
Publisher: name: arXiv
Year: 2000
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Direct $J/ψ$ and $ψ'$ production rates at Tevatron are calculated in the $k_t$-factorization approach within the color-singlet model. In this approach, the production rates are enhanced by a factor of 20 compared to the naive collinear parton model. However, the theoretical predictions are still below the experimental data by at least one order of magnitude. This means that to explain charmonium productions at Tevatron, we still need to call for the contributions from color-octet channels or other production mechanisms.
description: Latex, 10 pages, 4 figures
[Halle (Saale), Universitäts- und Landesbibliothek Sachsen-Anhalt, Morbio 3 (38 a)]
Creators: name: , Leonardus
name: Gabriellus De Loranis
Publisher: name: Universitäts- und Landesbibliothek Sachsen-Anhalt
Year: 1254
Subjects: subject: Sonstige weltliche Aussteller
subject: Notarsurkunde
subject: Urkunde
subject: 090

description: Leonardus und Gabriellus de Loranis restituieren, weil sie dazu verurteilt wurden, dem Abraminus, Sohn des verstorbenen Tithus Panninus, ein Stück Land, gelegen in der Nachbarschaft von St. Donati.
Moments of parton evolution probabilities on the lattice within the Schroedinger functional scheme
Creators: name: Bucarelli, A.
name: Palombi, F.
name: Petronzio, R.
name: Shindler, A.
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: We define, within the Schroedinger functional scheme (SF), the matrix elements of the twist-2 operators corresponding to the first two moments of non-singlet parton densities. We perform a lattice one-loop calculation that fixes the relation between the SF scheme and other common schemes and shows the main source of lattice artefacts. This calculation sets the basis for a numerical evaluation of the non-perturbative running of parton densities.
description: Latex file, 4 figures, 15 pages
Random manifolds and quantum gravity
Creators: name: Krzywicki, A.
Publisher: name: arXiv
Year: 1999
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: The non-perturbative, lattice field theory approach towards the quantization of Euclidean gravity is reviewed. Included is a tentative summary of the most significant results and a presentation of the current state of art.
description: invited plenary talk at LATTICE '99 (Pisa), latex 5pp
Flavor Mixing Signals For Realistic Supersymmetric Unification
Creators: name: Arkani-Hamed, Nima
name: Cheng, Hsin-Chia
name: Hall, L. J.
Publisher: name: arXiv
Year: 1995
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The gauge interactions of any supersymmetric extension of the standard model involve new flavor mixing matrices. The assumptions involved in the construction of minimal supersymmetric models, both $SU(3) \times SU(2) \times U(1)$ and grand unified theories, force a large degree of triviality on these matrices. However, the requirement of realistic quark and lepton masses in supersymmetric grand unified theories forces these matrices to be non-trivial. This leads to important new dominant contributions to the neutron electric dipole moment and to the decay mode $p \to K^oμ^+$, and suggests that there may be important weak scale radiative corrections to the Yukawa coupling matrix of the up quarks. The lepton flavor violating signal $μ\to eγ$ is studied in these theories when $\tanβ$ is sufficiently large that radiative effects of couplings other than $λ_t$ must be included. The naive expectation that large $\tanβ$ will force sleptons to unacceptably large masses is not borne out: radiative suppressions to the leptonic flavor mixing angles allow regions where the sleptons are as light as 300 GeV, provided the top Yukawa coupling in the unified theory is near the minimal value consistent with $m_t$.
description: 53 pages, LaTeX, 11 uuencoded figures included
The continuity of additive and convex functions, which are upper bounded on non-flat continua in $\mathbb R^n$
Creators: name: Banakh, Taras
name: Jabłońska, Eliza
name: Jabłoński, Wojciech
Publisher: name: arXiv
Year: 2018
Subjects: subject: General Topology (math.GN)
subject: Functional Analysis (math.FA)
subject: FOS: Mathematics
subject: 26B05, 26B25, 54C05, 54C30, 54D05

description: We prove that for a continuum $K\subset \mathbb R^n$ the sum $K^{+n}$ of $n$ copies of $K$ has non-empty interior in $\mathbb R^n$ if and only if $K$ is not flat in the sense that the affine hull of $K$ coincides with $\mathbb R^n$. Moreover, if $K$ is locally connected and each non-empty open subset of $K$ in not flat, then for any (analytic) non-meager subset $A\subset K$ the sum $A^{+n}$ of $n$ copies of $A$ is not meager in $\mathbb R^n$ (and then the sum $A^{+2n}$ of $2n$ copies of the analytic set $A$ has non-empty interior in $\mathbb R^n$ and the set $(A-A)^{+n}$ is a neighborhood of zero in $\mathbb R^n$). This implies that a mid-convex function $f:D\to\mathbb R$, defined on an open convex subset $D\subset\mathbb R^n$ is continuous if it is upper bounded on some non-flat continuum in $D$ or on a non-meager analytic subset of a locally connected nowhere flat subset of $D$.
description: 5 pages
Additional file 8: of Diverse biological effects of glycosyltransferase genes from Tartary buckwheat
Creators: name: Yao, Panfeng
name: Deng, Renyu
name: Huang, Yunji
name: Stael, Simon
name: Shi, Jiaqi
name: Shi, Guanlan
name: Lv, Bingbing
name: Li, Qi
name: Dong, Qixin
name: Wu, Qi
name: Li, Chenglei
name: Chen, Hui
name: Zhao, Haixia
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology
subject: Computational Biology

description: Figure S8. Molecular analyses of the FtUFGTs-overexpressing Arabidopsis. Expression analysis of the FtUFGTs genes in transgenic plants and wild type. The Arabidopsis Ataction gene was used as an internal control. Data are presented as mean ± SD (n = 3). (DOCX 59 kb)
MOESM3 of A meta-analysis comparing 48-week treatment outcomes of single and multi-tablet antiretroviral regimens for the treatment of people living with HIV
Creators: name: Clay, Patrick
name: Yuet, Wei
name: Moecklinghoff, Christiane
name: Duchesne, Inge
name: TronczyĹSki, Krzysztof
name: Sandip Shah
name: Shao, Dong
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3. a. Quality of RCTs Included in quantitative evidence synthesis (studies included in meta-analysis). b. Quality of observational studies included in quantitative evidence synthesis (studies included in meta-analysis).
Deliverable 2.3: Barriers and Solutions for Information Exchange and Decision Performance
Creators: name: Koppelaar, Rembrandt
Publisher: name: Zenodo
Year: 2023

description: Provides the Barriers and Solutions for Information Exchange and Decision Performance for the CircThread projects including as outcomes: an understanding of why the information exchanges as identified in the CircThread use cases between actors are currently not carried out from economic/social/organisational aspects (the barriers), an understanding of the needs of stakeholders regarding trust, security and data sovereignty for all the product information aspects, and a mapping of solutions to remove the barriers from IT, process and organisational perspectives. The deliverable will include based on the user needs identified for circular economy and barriers and potential solutions in relation to the use cases an evaluation with recommendations on policy issues for a Circular Economy in Europe and is marked as contributing to policy issues/recommendations.
Vortex Structure vs. Monopole Dominance in Abelian-Projected Gauge Theory
Creators: name: Ambjorn, J.
name: Giedt, J.
name: Greensite, J.
Publisher: name: arXiv
Year: 1999
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We find that Polyakov lines, computed in abelian-projected SU(2) lattice gauge theory in the confined phase, have finite expectation values for lines corresponding to two units of the abelian electric charge. This means that the abelian-projected lattice has at most Z(2), rather than U(1), global symmetry. We also find a severe breakdown of the monopole dominance approximation, as well as positivity, in this charge-2 case. These results imply that the abelian-projected lattice is not adequately represented by a monopole Coulomb gas; the data is, however, consistent with a center vortex structure. Further evidence is provided, in lattice Monte Carlo simulations, for collimation of confining color-magnetic flux into vortices.
description: 37 pages, including 23 eps figures, Latex2e
Estimating transport coefficients of interacting pion gas with K-matrix cross sections
Creators: name: Kadam, Guruprasad
name: Pawar, Swapnali
name: Mishra, Hiranmaya
Publisher: name: arXiv
Year: 2018
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We estimate the transport coefficients, $viz.$, shear and bulk viscosities as well as thermal and electrical conductivities, of hot pionic matter using relativistic Boltzmann equation in relaxation time approximation. We use K-matrix parametrization of pion-pion cross sections to estimate the transport coefficients which incorporate multiple heavy resonances while simultaneously preserving the unitarity of S-matrix. We compare transport coefficients estimated using K-matrix parametrization with existing literature on pionic transport coefficients. We find that the K-matrix scheme estimations are in reasonable agreement with previous results.
description: Revised version, Accepted for publication in Journal Of Physics G
Phanera rahmatii Bandyop, P. P. Ghoshal & M. K. Pathak
Creators: name: Mackinder, Barbara A.
name: Clark, Ruth
Publisher: name: Zenodo
Year: 2014
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Fabales
Fabaceae
Phanera
Phanera rahmatii

description: Phanera rahmatii (Merr.) Bandyop, P.P. Ghoshal & M.K. Pathak, Bangladesh J. Pl. Taxon. 19(1): 59. 2012.
Bauhinia rahmatii Merr., Pap. Michigan Acad. Sci. 19: 158. 1934.
DISTRIBUTION. Endemic to Sumatra.
description: Published as part of Mackinder, Barbara A. & Clark, Ruth, 2014, A synopsis of the Asian and Australasian genus Phanera Lour. (Cercideae: Caesalpinioideae: Leguminosae) including 19 new combinations, pp. 49-68 in Phytotaxa 166 (1) on page 62, DOI: 10.11646/phytotaxa.166.1.3, http://zenodo.org/record/5138206
CP violation in neutrino oscillations and L/E flatness of the e-like event ratio at Super-Kamiokande
Creators: name: Ahluwalia, D. V.
name: Liu, Y.
name: Stancu, I.
Publisher: name: arXiv
Year: 2000
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We show that if the presently observed L/E-flatness of the electron-like event ratio in the Super-Kamiokande atmospheric neutrino data is confirmed then the indicated ratio must be {\em unity}. Further, it is found that once CP is violated the exact L/E flatness implies: (a) The CP-violating phase, in the standard parameterization, is narrowed down to two possibilities pm pi/2, and (b) The mixing between the second and the third generations must be maximal. With these results at hand, we argue that a dedicated study of the L/E-flatness of the electron-like event ratio by Super-Kamiokande can serve as an initial investigatory probe of CP violation in the neutrino sector. The assumptions under which these results hold are explicitly stated.
description: Published version
BACH: Grand Challenge on Breast Cancer Histology Images
Creators: name: Aresta, Guilherme
name: Araújo, Teresa
name: Kwok, Scotty
name: Chennamsetty, Sai Saketh
name: Safwan, Mohammed
name: Alex, Varghese
name: Marami, Bahram
name: Prastawa, Marcel
name: Chan, Monica
name: Donovan, Michael
name: Fernandez, Gerardo
name: Zeineh, Jack
name: Kohl, Matthias
name: Walz, Christoph
name: Ludwig, Florian
name: Braunewell, Stefan
name: Baust, Maximilian
name: Vu, Quoc Dang
name: To, Minh Nguyen Nhat
name: Kim, Eal
name: Kwak, Jin Tae
name: Galal, Sameh
name: Sanchez-Freire, Veronica
name: Brancati, Nadia
name: Frucci, Maria
name: Riccio, Daniel
name: Wang, Yaqi
name: Sun, Lingling
name: Ma, Kaiqiang
name: Fang, Jiannan
name: Kone, Ismael
name: Boulmane, Lahsen
name: Campilho, Aurélio
name: Eloy, Catarina
name: Polónia, António
name: Aguiar, Paulo
Publisher: name: arXiv
Year: 2018
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: Breast cancer is the most common invasive cancer in women, affecting more than 10% of women worldwide. Microscopic analysis of a biopsy remains one of the most important methods to diagnose the type of breast cancer. This requires specialized analysis by pathologists, in a task that i) is highly time- and cost-consuming and ii) often leads to nonconsensual results. The relevance and potential of automatic classification algorithms using hematoxylin-eosin stained histopathological images has already been demonstrated, but the reported results are still sub-optimal for clinical use. With the goal of advancing the state-of-the-art in automatic classification, the Grand Challenge on BreAst Cancer Histology images (BACH) was organized in conjunction with the 15th International Conference on Image Analysis and Recognition (ICIAR 2018). A large annotated dataset, composed of both microscopy and whole-slide images, was specifically compiled and made publicly available for the BACH challenge. Following a positive response from the scientific community, a total of 64 submissions, out of 677 registrations, effectively entered the competition. From the submitted algorithms it was possible to push forward the state-of-the-art in terms of accuracy (87%) in automatic classification of breast cancer with histopathological images. Convolutional neuronal networks were the most successful methodology in the BACH challenge. Detailed analysis of the collective results allowed the identification of remaining challenges in the field and recommendations for future developments. The BACH dataset remains publically available as to promote further improvements to the field of automatic classification in digital pathology.
description: Accepted for publication at Medical Image Analysis (Elsevier). Publication licensed under the Creative Commons CC-BY-NC-ND 4.0 license http://creativecommons.org/licenses/by-nc-nd/4.0/
MOESM1 of Chromatin-mediated regulators of meiotic recombination revealed by proteomics of a recombination hotspot
Creators: name: Storey, Aaron
name: Wang, Hsin-Ping
name: Protacio, Reine
name: Davidson, Mari
name: Tackett, Alan
name: Wahls, Wayne
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Developmental Biology
subject: Cancer
subject: Computational Biology

description: Additional file 1. Contains supplementary information germane to but not essential for inclusion in the main text: Fig. S1, purification and DNA binding of LacI-6xHis-PrA fusion protein; Fig. S2, optimization of conditions for purification of MiniCs; Fig. S3, normalization of MS data for differences in protein yield; Fig. S4, Pearson correlation coefficients for all pairwise combinations; Table S1, genotypes of S. pombe strains used; Table S2, nuclear and chromatin-associated proteins enriched at the hotspot.
Phase diagram of three-dimensional dynamical triangulations with a boundary
Creators: name: Warner, Simeon
name: Catterall, Simon
name: Renken, Ray
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: We use Monte Carlo simulation to study the phase diagram of three-dimensional dynamical triangulations with a boundary. Three phases are indentified and characterized. One of these phases is a new, boundary dominated phase; a simple argument is presented to explain its existence. First-order transitions are shown to occur along the critical lines separating phases.
description: 9 pages, 5 EPS figures. v2 corrects typos in table 1
Timing Offset Calibration of CZTI instrument aboard ASTROSAT
Creators: name: Basu, Avishek
name: Joshi, Bhal Chandra
name: Bhattacharya, Dipankar
name: Rao, A R
name: Naidu, A.
name: Krishnakumar, M. A.
name: Arumugsamy, Prakash
name: Vadawale, Santosh
name: Manoharan, P. K.
name: Dewangan, G. C.
name: Vibhute, Ajay
name: Mithun, N. P. S.
name: Sharma, Vidushi
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: The radio as well as the high energy emission mechanism in pulsars is yet not understood properly. A multi-wavelength study is likely to help in better understanding of such processes. The first Indian space-based observatory, ASTROSAT, has five instruments aboard, which cover the electromagnetic spectrum from infra-red (1300 $Å$) to hard X-ray (380 KeV). Cadmium Zinc Telluride Imager (CZTI), one of the five instruments is a hard X-ray telescope functional over an energy range of 20-380 KeV. We aim to estimate the timing offset introduced in the data acquisition pipeline of the instrument, which will help in time alignment of high energy time series with those from two other ground-based observatories, viz. the Giant Meterwave Radio Telescope (GMRT) and the Ooty Radio Telescope (ORT). PSR B0531+21 is a well-studied pulsar with nearly aligned radio and hard X-ray pulse profiles. We use simultaneous observations of this pulsar with the ASTROSAT, the ORT and the GMRT. The pulsar was especially observed using the ORT with almost daily cadence to obtain good timing solutions. We also supplement the ORT data with archival FERMI data for estimation of timing noise. The timing offset of ASTROSAT instruments was estimated from fits to arrival time data at the ASTROSAT and the radio observatories. We estimate the offset between the GMRT and the ASTROSAT-CZTI to be -4716 $\pm$ 50 $μs$. The corresponding offset with the ORT was -29639 $\pm$ 50 $μs$. The offsets between the GMRT and Fermi-LAT -5368 $\pm$ 56 $μs$. (Abridged)
description: 6 pages, 5 figures, 2 tables, Revised and Updated, accepted for publication in A&A
Additional file 9: of Diverse biological effects of glycosyltransferase genes from Tartary buckwheat
Creators: name: Yao, Panfeng
name: Deng, Renyu
name: Huang, Yunji
name: Stael, Simon
name: Shi, Jiaqi
name: Shi, Guanlan
name: Lv, Bingbing
name: Li, Qi
name: Dong, Qixin
name: Wu, Qi
name: Li, Chenglei
name: Chen, Hui
name: Zhao, Haixia
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Molecular Biology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology

description: Figure S9. HPLC chromatograph of flavonoids from standard samples (A), wild type (B), oxFtUFGT8 plants (C), oxFtUFGT9 plants (D), and oxFtUFGT15 plants (E); a-d represents rutin, myricetin, quercetin, and kaempferol, respectively; The number above the arrow indicates the peak area at different eluting time. (DOCX 76 kb)
A toolbox to analyze collective cell migration, proliferation and cellular organization simultaneously
Creators: name: Hohmann, Urszula
name: Ghadban, Chalid
name: Prell, Julian
name: Strauss, Christian
name: Dehghani, Faramarz
name: Hohmann, Tim
Publisher: name: Universitäts- und Landesbibliothek Sachsen-Anhalt
Year: 2023
Subjects: subject: 610

description: Background: Analyses of collective cell migration and orientation phenomena are needed to assess the behavior of multicellular clusters. While some tools to the authors’ knowledge none is capable to analyze collective migration, cellular orientation and proliferation in phase contrast images simultaneously. Methods: We provide a tool based to analyze phase contrast images of dense cell layers. PIV is used to calculatevelocity fields, while the structure tensor provides cellular orientation. An artificial neural network is used to identify cell division events, allowing to correlate migratory and organizational phenomena with cell density. Conclusion: The presented tool allows the simultaneous analysis of collective cell behavior from phase contrast images in terms of migration, (self-)organization and proliferation.
MOESM10 of m6A modification suppresses ocular melanoma through modulating HINT2 mRNA translation
Creators: name: Jia, Ruobing
name: Chai, Peiwei
name: Wang, Shanzheng
name: Sun, Baofa
name: Xu, Yangfan
name: Yang, Ying
name: Ge, Shengfang
name: Jia, Renbing
name: Yang, Yun-Gui
name: Fan, Xianqun
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Molecular Biology
subject: Pharmacology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: Additional file 10: Figure S6. Overexpression of HINT2 inhibited ocular melanoma tumorigenesis.
Gravitational waves and mass ejecta from binary neutron star mergers: Effect of large eccentricities
Creators: name: Chaurasia, Swami Vivekanandji
name: Dietrich, Tim
name: Johnson-McDaniel, Nathan K.
name: Ujevic, Maximiliano
name: Tichy, Wolfgang
name: Brügmann, Bernd
Publisher: name: arXiv
Year: 2018
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: As current gravitational wave (GW) detectors increase in sensitivity, and particularly as new instruments are being planned, there is the possibility that ground-based GW detectors will observe GWs from highly eccentric neutron star binaries. We present the first detailed study of highly eccentric BNS systems with full (3+1)D numerical relativity simulations using consistent initial conditions, i.e., setups which are in agreement with the Einstein equations and with the equations of general relativistic hydrodynamics in equilibrium. Overall, our simulations cover two different equations of state (EOSs), two different spin configurations, and three to four different initial eccentricities for each pairing of EOS and spin. We extract from the simulated waveforms the frequency of the f-mode oscillations induced during close encounters before the merger of the two stars. The extracted frequency is in good agreement with f-mode oscillations of individual stars for the irrotational cases, which allows an independent measure of the supranuclear equation of state not accessible for binaries on quasi-circular orbits. The energy stored in these f-mode oscillations can be as large as $10^{-3}M_\odot \sim 10^{51}$ erg, even with a soft EOS. In order to estimate the stored energy, we also examine the effects of mode mixing due to the stars' offset from the origin on the f-mode contribution to the GW signal. While in general (eccentric) neutron star mergers produce bright electromagnetic counterparts, we find that the luminosity decreases when the eccentricity becomes too large, due to a decrease of the ejecta mass. Finally, the use of consistent initial configurations also allows us to produce high-quality waveforms for different eccentricities which can be used as a testbed for waveform model development of highly eccentric binary neutron star systems.
description: (26 pages, 17 figures), "CoRe webpage, see http://www.computational-relativity.org/"
MOESM2 of Cost-effective interventions for breast cancer, cervical cancer, and colorectal cancer: new results from WHO-CHOICE
Creators: name: Ambinintsoa Ralaidovy
name: Chaitra Gopalappa
name: AndrĂŠ Ilbawi
name: Pretorius, Carel
name: Lauer, Jeremy
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Science Policy

description: Additional file 2. Effect sizes, costing assumptions and detailed results per region.