cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Research Software Directory - a content management system tailored to research software
Creators: name: Spaaks, Jurriaan H.
Publisher: name: Zenodo
Year: 2020
Subjects: Research Software Directory
CRIS
Current Research Information System

description: Introducing the Research Software Directory, a content management system tailored to research software: what is it, why is it useful, how to fill it with data, how to get an instance up and running.
Additional file 1 of Behavioral determinants of arsenic-safe water use among Great Plains Indian Nation private well users: results from the Community-Led Strong Heart Water Study Arsenic Mitigation Program
Creators: name: Endres, Kelly
name: Zacher, Tracy
name: Richards, Francine
name: Bear Robe, Lisa
name: Powers, Martha
name: Yracheta, Joseph
name: Harvey, David
name: Best, Lyle G.
name: Red Cloud, Reno
name: Black Bear, Annabelle
name: Ristau, Steve
name: Aurand, Dean
name: Skinner, Leslie
name: Perin, Jamie
name: Cuny, Christa
name: Gross, Marie
name: Thomas, Elizabeth D.
name: Rule, Ana
name: Schwab, Kellogg
name: Moulton, Lawrence H.
name: O’Leary, Marcia
name: Navas-Acien, Ana
name: George, Christine Marie
Publisher: name: figshare
Year: 2023
Subjects: subject: Space Science
subject: Medicine
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1: Supplementary Table 1. Likert question response options. Supplementary Table 2. Differences in behavioral determinants at baseline by study arm. Supplementary Table 3. Baseline, follow-up, and change over study period for behavioral determinants by study arm. Supplementary Table 4. Influence of demographic factors on follow-up use of arsenic-safe water. Supplementary Table 5. Influence of demographic factors on arsenic filter cartridge change.
Serrapinnus notomelas
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Characiformes
Characidae
Serrapinnus
Serrapinnus notomelas

description: Serrapinnus notomelas (Eigenmann, 1915) Fig. 10 Body elongated; greatest body depth contained 2.4 to 2.8 and caudal peduncle depth 8.2 to 8.6 times in SL; head length 3.5 to 4.0, predorsal distance 1.8 to 2.0 and caudal peduncle length 9.5 to 10.3 in SL; snout length 3.5 to 3.8, horizontal orbital diameter 2.3 to 3.2 and least interorbital width 2.6 to 3.0 in HL. Mouth terminal; premaxilla with 4 or 5, dentary with 6 or 7 and maxilla with 1 or 2 teeth. Lateral line incompletely pored, with 5-7 pored scales; longitudinal series with 30-34 scales; transverse series above lateral line with 3½ or 4 scale rows and below with 3 or 3½ scale rows. Dorsal fin with 10 or 11, pectoral fin with 12 or 13, pelvic fin with 8 or 9, anal fin with 19-24 and caudal fin with 19 rays. Ground color whitish; dark-brown diffuse longitudinal stripe on flank, from pseudotympanum to caudal peduncle; black rounded blotch on posterior portion of caudal peduncle and caudal-fin base, not extended to median caudal-fin rays. Dorsal fin with black chromatophores along two unbranched and first branched rays and proximal half of remaining; pectoral, pelvic, anal and caudal fins yellowish (Graça, Pavanelli, 2007). Maximum standard length. 40.0 mm (Graça, Pavanelli, 2007). Distribution. Upper rio Paraná basin.
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on page 39, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
description: {"references": ["Eigenmann CH. The Cheirodontinae, a subfamily of minute characid fishes of South America. Mem Mus Comp Zool. 1915; 7 (1): 1 - 100.", "Pavanelli CS, Graca WJ, Zawadzki CH, Britski HA, Vidotti AP, Avelino GS, Verissimo S. Fishes from the Corumba Reservoir, Paranaiba River drainage, upper rio Parana basin, State of Goias, Brazil. Check List. 2007; 3 (1): 58 - 64."]}
Minority rights in Islam: from dhimmi to citizen
Creators: name: Şentürk, Recep
Publisher: name: Zenodo
Year: 2015
Subjects: Human Rights
Constitutional Law
International and World Politics

description: In the last few years, issues related to human rights, including encouraging the democratization of Muslim societies from the Middle East to Southeast Asia, have acquired great importance in shaping the character of U.S.-Muslim relations and U.S. policy toward Muslim countries. An important impetus behind this development were the tragic events of 9/11, which demonstrated the destructive potential of militant groups that use a distorted interpretation of Islam as justification for their actions. These events also led to a greater realization by the United States--and the West--that a lack of democracy and lack of respect for human rights have been contributory factors to the rise of militant Islam. Consequently, in its approach toward the Muslim world, the United States has emphasized the themes of human rights and democracy. Within the Islamic world, too, both secular and moderate Islamists have begun focusing on issues related to human rights. Although many conservative Muslims believe that Islam is incompatible with Western notions of democracy and human rights, reformist Muslim thinkers and activists maintain that a proper reading of Islamic injunctions and the ethical values underpinning those injunctions shows there is no such incompatibility. Complicating the debate is the fact that many Muslims--secular as well as conservative and reformist--doubt the seriousness of the U.S. commitment to the cause of human rights and democracy in the Muslim world, believing that the United States applies human rights' standards selectively to suit its strategic and economic interests. Irrespective of the validity of these charges, they are part of the context of the U.S.-Muslim dialogue on human rights. And it is this complex dialogue that this volume seeks to advance.
Serrapinnus Malabarba 1998
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Characiformes
Characidae
Serrapinnus

description: Serrapinnus sp. 1 Fig. 10 Body elongated; greatest body depth contained 2.2 to 2.5 and caudal peduncle depth 7.9 to 9.8 times in SL; head length 4.3 to 4.5, predorsal distance 1.9 to 2.0 and caudal peduncle length 9.0 to 10.7 in SL; snout length 3.3 to 3.6, horizontal orbital diameter 2.3 to 3.2 and least interorbital width 2.8 to 3.0 in HL. Mouth terminal; premaxilla with 5 or 6, dentary with 8-10 and maxilla with 2 or 3 teeth. Lateral line incompletely pored, with 7-9 pored scales; longitudinal series with 30-32 scales; transverse series above lateral line with 3½ or 4 scale rows and below with 3 or 3½ scale rows. Dorsal fin with 10 or 11, pectoral fin with 12 or 13, pelvic fin with 8 or 9, anal fin with 19-24 and caudal fin with 19 rays. Ground color whitish; dark-brown longitudinal stripe on flank, from pseudotympanum to caudal peduncle; dark-brown rounded blotch on posterior portion of caudal peduncle and caudal-fin base, not extended to median caudal-fin rays (Graça, Pavanelli, 2007). Maximum standard length. 53.0 mm (Graça, Pavanelli, 2007). Distribution. Upper rio Paraná basin.
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on page 39, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
description: {"references": ["Pavanelli CS, Graca WJ, Zawadzki CH, Britski HA, Vidotti AP, Avelino GS, Verissimo S. Fishes from the Corumba Reservoir, Paranaiba River drainage, upper rio Parana basin, State of Goias, Brazil. Check List. 2007; 3 (1): 58 - 64."]}
Additional file 10 of Tandem mass tag-based (TMT) quantitative proteomics analysis reveals the response of fine roots to drought stress in cotton (Gossypium hirsutum L.)
Creators: name: Xiao, Shuang
name: Liu, Liantao
name: Zhang, Yongjiang
name: Sun, Hongchun
name: Zhang, Ke
name: Bai, Zhiying
name: Dong, Hezhong
name: Liu, Yuchun
name: Li, Cundong
Publisher: name: figshare
Year: 2020
Subjects: subject: Plant Biology
subject: FOS: Biological sciences

description: Additional file 10:. Distributions of peptide fragment ion peak area.
Addressing Data Scarcity in Multimodal User State Recognition by Combining Semi-Supervised and Supervised Learning
Creators: name: Voß, Hendric
name: Wersing, Heiko
name: Kopp, Stefan
Publisher: name: arXiv
Year: 2022
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: Detecting mental states of human users is crucial for the development of cooperative and intelligent robots, as it enables the robot to understand the user's intentions and desires. Despite their importance, it is difficult to obtain a large amount of high quality data for training automatic recognition algorithms as the time and effort required to collect and label such data is prohibitively high. In this paper we present a multimodal machine learning approach for detecting dis-/agreement and confusion states in a human-robot interaction environment, using just a small amount of manually annotated data. We collect a data set by conducting a human-robot interaction study and develop a novel preprocessing pipeline for our machine learning approach. By combining semi-supervised and supervised architectures, we are able to achieve an average F1-score of 81.1\% for dis-/agreement detection with a small amount of labeled data and a large unlabeled data set, while simultaneously increasing the robustness of the model compared to the supervised approach.
An Experimental and Theoretical Investigation of the Gas-Phase C(3P) + N2O Reaction. Low Temperature Rate Constants and Astrochemical Implications
Creators: name: Hickson, Kevin M.
name: Loison, Jean-Christophe
name: Larregaray, Pascal
name: Bonnet, Laurent
name: Wakelam, Valentine
Publisher: name: arXiv
Year: 2022
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: The reaction between atomic carbon in its ground electronic state, C(3P), and nitrous oxide, N2O, has been studied below room temperature due to its potential importance for astrochemistry, with both species considered to be present at high abundance levels in a range of interstellar environments. On the experimental side, we measured rate constants for this reaction over the 50-296 K range using a continuous supersonic flow reactor. C(3P) atoms were generated by the pulsed photolysis of carbon tetrabromide at 266 nm and were detected by pulsed laser induced fluorescence at 115.8 nm. Additional measurements allowing the major product channels to be elucidated were also performed. On the theoretical side, statistical rate theory was used to calculate low temperature rate constants. These calculations employed the results of new electronic structure calculations of the 3A" potential energy surface of CNNO and provided a basis to extrapolate the measured rate constants to lower temperatures and pressures. The rate constant was found to increase monotonically as the temperature falls, reaching a value of k(C(3P)+N2O)(50 K) = (7.9 +- 0.8) x 10-11 cm3 s-1 at 50 K. As current astrochemical models do not include the C + N2O reaction, we tested the influence of this process on interstellar N2O and other related species using a gas-grain model of dense interstellar clouds. These simulations predict that N2O abundances decrease significantly at intermediate times (10^3 - 10^5 years) when gas-phase C(3P) abundances are high.
description: Accepted for publication in the Journal of Physical Chemistry A
Metamaterial development for mechanical interfacial tuning and sensing applications
Creators: name: Azimi Dijvejin, Zahra
Publisher: name: University of British Columbia
Year: 2023

description: Metamaterials are artificially engineered materials with unique properties that are not found in nature. They have potential applications in various fields, and their development has opened up new avenues of research in physics, materials science, and engineering. Here, I designed and fabricated kirigami, a 2D mechanical metamaterial, and microwave sensing metamaterials for applications such as antifouling surfaces and sensors. The combination of the out-of-plane deformation of kirigami structures and the fast, on-demand detection of changes in microwave radiation properties of electrical metamaterials were utilized. This thesis presents two key contributions to the use of metamaterials. First, the development of a suspended kirigami surface, a flexible and deformable mechanical metamaterial that reduces the adhesion strength of various foulants including ice, mud, epoxy adhesive, and wax. Such surfaces can even be applied on complex curved geometries. Second, the investigation of electrical microwave sensors (electrical metamaterials) and their inclusion within coatings that exhibit low interfacial toughness with ice, for smart, hybrid de-icing applications. My work first revealed that both the ice adhesion strength and interfacial toughness of some materials are inversely dependent on temperature. Next, I utilized embedded heaters to modulate the surface temperature and tailor the interface properties of ice on the coating. Moreover, embedded microwave metamaterials were used to detect icing and de-icing accurately, which would help optimize the electrical energy expended during de-icing. Finally, my work explores the combination of electrical and mechanical metamaterials for strain or humidity sensing. Heterogeneous kirigami structures and an array of electrical metamaterials are designed and optimized for strain sensing. The amount of strain applied to the kirigami sheet can be correlated to the response of the electrical metamaterials as they rotate out of plane on the kirigami hinges. I extended this concept for humidity sensing by developing a kirigami structure fabricated from a humidity-absorbing material, nylon 6-6. In this case, the kirigami deforms out-of-plane in response to a humidity difference on the two sides of the kirigami sheet, demonstrating the potential of using metamaterials for humidity sensing applications. Overall, this thesis demonstrates the engineering potential of combined mechanical/electrical metamaterials.
Serrapinnus Malabarba 1998
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Characiformes
Characidae
Serrapinnus

description: Serrapinnus sp. 2 Fig. 10 Body elongated; greatest body depth contained 2.8 to 3.9 and caudal peduncle depth 8.0 to 10.7 times in SL; head length 4.0 to 4.6, predorsal distance 1.8 to 2.0 and caudal peduncle length 9.7 to 10.8 in SL; snout length 3.1 to 3.9, horizontal orbital diameter 2.0 to 2.6 and least interorbital width 2.5 to 3.5 in HL. Mouth terminal; premaxilla with 4 or 5, dentary with 6, and maxilla with 2 teeth. Lateral line incompletely pored, with 6 or 7 pored scales; longitudinal series with 31-34 scales; transverse series above lateral line with 3½ scale rows and below with 3 or 3½ scale rows. Dorsal fin with 11, pectoral fin with 12 or 13, pelvic fin with 8 or 9, anal fin with 20-22 and caudal fin with 19 rays. Ground color whitish; dark-brown longitudinal stripe on flank, from pseudotympanum to caudal peduncle; dark-brown rounded blotch on posterior portion of caudal peduncle and caudal-fin base, not extended to median caudal-fin rays. Hyaline fins; dorsal and anal fins with distal portion black (Graça, Pavanelli, 2007). Maximum standard length. 29.0 mm (Graça, Pavanelli, 2007). Distribution. Upper rio Paraná basin.
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on page 39, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
description: {"references": ["Pavanelli CS, Graca WJ, Zawadzki CH, Britski HA, Vidotti AP, Avelino GS, Verissimo S. Fishes from the Corumba Reservoir, Paranaiba River drainage, upper rio Parana basin, State of Goias, Brazil. Check List. 2007; 3 (1): 58 - 64."]}
Women in the Academy: Key studies on gender in political science
Creators: name: Timperley, Claire
Publisher: name: Open Access Te Herenga Waka-Victoria University of Wellington
Year: 2023
Subjects: subject: 160699 Political Science not elsewhere classified
subject: FOS: Political science

description: Despite significant advances in women's status in political science departments in New Zealand and internationally, women remain underrepresented in the profession. This review article discusses five factors that are identified in the literature as problems for women's progression in political science: the double bind, gender devaluation, the 'chilly climate', the culture of research and the chronological crunch. The specific causes of these factors and the extent of their impact on women's status and performance in the discipline have not yet been fully established. A review of the international political science literature, however, reveals a growing dedication both to identifying the key variables impacting on women's success in political science and to advancing strategies that might improve the status of women in the profession. I suggest that New Zealand's political science community should make similar commitments in order to more effectively reduce gender gaps in the presence, status and outcomes of female scholars across the discipline. © 2013 The Author(s).
Bryconamericus Eigenmann in Eigenmann, McAtee & Ward 1907
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Characiformes
Characidae
Bryconamericus

description: Bryconamericus 1. Greatest body depth contained 2.7 to 2.9 times in standard lenght; teeth in the outer premaxillary series forming a regular arch.................................. B. aff. iheringii 1’. Greatest body depth contained 3.3 to 4.2 times in standard lenght; teeth in the outer premaxillary series irregularly arranged............................................................. 2 2. Distal portion of caudal-fin lobes black; dorsal and anal fins completely hyaline; mature males with bony hooks on the anal- and pelvic-fin rays; 2-3 maxillary teeth................. ............................................................................... B. exodon 2’. Distal portion of caudal-fin lobes hyaline; middle portion of the dorsal- and anal-fin rays dusky; bony hooks always absent on the anal- and pelvic-fin rays; 2-5 maxillary teeth...................................................... B. turiuba
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on page 39, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
Additional file 19 of Gut microbiota is associated with the effect of photoperiod on seasonal breeding in male Brandt’s voles (Lasiopodomys brandtii)
Creators: name: Zhu, Hanyi
name: Li, Guoliang
name: Liu, Jing
name: Xu, Xiaoming
name: Zhang, Zhibin
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 19: Table S14. Difference in beta diversity of gut microbiota between the Con and Ab groups, Con and F-LD groups, Con and F-SD groups, Ab and F-LD groups, Ab and F-SD groups, and F-LD and F-SD groups in the FMT experiment.
Structural performance of prestressed precast high speed railway bridges using high performance concrete
Creators: name: Pring, Bradley Matthew
Publisher: name: Imperial College London
Year: 2019

description: Bridges often need to conform to strict alignment rules for high speed railway (HSR) lines. Generally, the bridges are constructed either from prestressed concrete or steel-concrete composite. Prestressed concrete bridges can be constructed by precast methods, which offer benefits in economies of scale, quality and construction times for long repetitive viaducts. However, currently precast construction utilises conventional concrete strengths, leading to thicker, heavier cross sections to resist the load. High performance concrete (HPC), with its increased strength, can be implemented to reduce the precast segment weights, subsequently reducing substructure and transportation capacities. However, lighter sections could lead to decks more prone to vibrations exceeding acceleration limits. Therefore, the implementation of HPC requires further research, addressed in this thesis, using the most sophisticated and realistic numerical models of the bridge, vehicle, track, wheel-rail interaction and rail irregularities, identified in literature. A suitable benchmark bridge is selected and analysed from a database of concrete HSR bridges. This analysis finds that using track irregularities with wheel-rail contact is mandatory for accurate bridge accelerations, leading to up to 3.75 times larger accelerations than equivalent moving load models. Furthermore, sectional deformations have been found to be non-negligible, with beam element bridge models incapable of exhibiting the wide frequency content of the acceleration response seen in shell elements. A subsequent parametric analysis reduces the geometrical cross sectional dimensions of the precast components, implementing HPC to maintain the structural capacities. The applicability of the acceptable parametric analyses are tested on other bridges, determining more general conclusions for HPC inclusion in HSR bridges. Appropriate reductions in geometry (web, bottom flange and top flange thicknesses down to 66, 75 and 75% of the original value respectively), are identified from the response of the bridge and vehicle, by using HPC up to 96 MPa, contributing to up to 22% lighter precast elements. Appropriate design guidance is subsequently made for better design of HSR bridges to incorporate HPC into precast solutions.
Additional file 1 of Gut microbiota is associated with the effect of photoperiod on seasonal breeding in male Brandt’s voles (Lasiopodomys brandtii)
Creators: name: Zhu, Hanyi
name: Li, Guoliang
name: Liu, Jing
name: Xu, Xiaoming
name: Zhang, Zhibin
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Figure S1. Diversity and composition of gut microbiota in the LD and SD groups of Brandt’s voles.
ENVRI-FAIR D3.2: BEERi activity report
Creators: name: Leijala, Ulpu
Publisher: name: Zenodo
Year: 2023
Subjects: ENVRI-FAIR
FAIR data
stakeholder
research infrastructures
environmental research
BEERi

description: The BEERi activity report summarizes the activities of the Board of European Environmental Research Infrastructure within the lifetime of the ENVRI-FAIR project. It provides an overview of the main common topics tackled within the BEERi and taken actions regarding them, illustrating the cooperation of the Community of the environmental RIs.
Seeding Change: Co-designing a tool to explore energy modeling data
Creators: name: Conceição Firmino de Souza, Debora
Publisher: name: Zenodo
Year: 2024

description: In this article, we comment on the methodologies and practices of a participatory design project where stakeholders from diverse backgrounds were engaged in designing a system to explore complex data regarding energy systems. Within this framework, the design team mediated inputs from researchers, practitioners, and community members in collaborative activities, resulting in a web application promoting inclusive energy transition. We highlight the crucial role of design artifacts in communicating expectations and fostering collaboration. These findings offer valuable insights for future participatory design projects in helping community beneficiaries make informed decisions regarding their future. The paper highlights key insights and challenges encountered in the process.
Developing with data: Mapping engagement for greater understanding of library audiences
Creators: name: Covington, Elle
Publisher: name: The University of Texas at Austin
Year: 2019
Subjects: library
ACRL Conference
assessment

description: Poster was presented at ACRL 2019: Recasting the Narrative on Thursday, April 11, 2019 in Cleveland, OH.
description: Who hears the stories we tell and how do they respond? In order to build a strong supporter base, a library must know who their supporters are and what motivates them to engage. A data mapping project was conducted to determine patterns in rates of engagement with the library’s email communication. Email engagement data was combined with donor profiles to develop a greater sense of audience and their values in order to develop a targeted and effective communication strategy and identify and address engagement gaps. Email engagement data was collected for over 23,000 email subscribers between January 2017 and January 2018. This data was then compared against the university’s donor database to gain insights on audience demographics and engagement both with the library and with the larger campus community. The demographic information collected gave us a better idea of who had expressed interest in hearing from the library. We were able to determine numbers of alumni, faculty, students, and parents as well as which departments they may be associated with. Through email engagement statistics, we could tell what types of stories our supporters were most interested in and how language, layout, and timing impacted their levels of engagement with that content. The donor data further enhanced our understanding of our audience’s values by giving us information on which university departments our supporters donated to aside from the library. This data told us a powerful story about what our audience cares about and how the library can tailor our messages to their values and interests. A set of guidelines and recommendations was developed from the analyzed data, which will continue to inform and guide the development of email content and sending strategies in the future. This project models a way in which libraries can better understand their unique supporter base and develop more effective communication strategies designed to increase supporter involvement and engage potential donors.
Bryconamericus exodon Eigenmann 1907
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Characiformes
Characidae
Bryconamericus
Bryconamericus exodon

description: Bryconamericus exodon Eigenmann, 1907 Fig. 11 Body elongated; greatest body depth contained 3.8 to 4.2 and caudal peduncle depth 10.6 to 11.2 times in SL; head length 4.1 to 4.3, predorsal distance 2.1 to 2.2, and caudal peduncle length 6.7 to 7.1; snout length 3.5 to 4.0, horizontal orbital diameter 2.2 to 2.5 and interorbital distance 2.4 to 2.8 in HL. Mouth terminal; inner row of premaxilla with 4, outer row with 5; dentary with 9 or 10, and maxilla with 2 or 3 teeth. Lateral line with 36-38 pored scales; transverse series above lateral line with 4 or 5 rows and below with 3 scale rows. Dorsal fin with 11 or 12, pectoral fin with 14 or 15, pelvic fin 9, anal fin rays 22-26, and caudal with 19 rays. Ground color pale yellow; black vertically elongated humeral spot; silvery longitudinal band (brown or grey in fixed specimens), from humeral spot to caudal peduncle. Yellowish fins; distal margin of caudal-fin lobes black (Graça, Pavanelli, 2007). Maximum standard length. 62.0 mm (Graça, Pavanelli, 2007). Distribution. Río Paraguay and upper rio Paraná basins. Remarks. Bryconamericus exodon is a non-native species from the upper rio Paraná, and its occurrence can be associated with the functioning of the Canal da Piracema (a fish ladder that connects the region downstream from the Itaipu Dam to the region upstream from the dam).
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on pages 39-40, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
description: {"references": ["Pavanelli CS, Graca WJ, Zawadzki CH, Britski HA, Vidotti AP, Avelino GS, Verissimo S. Fishes from the Corumba Reservoir, Paranaiba River drainage, upper rio Parana basin, State of Goias, Brazil. Check List. 2007; 3 (1): 58 - 64."]}
Additional file 18 of Gut microbiota is associated with the effect of photoperiod on seasonal breeding in male Brandt’s voles (Lasiopodomys brandtii)
Creators: name: Zhu, Hanyi
name: Li, Guoliang
name: Liu, Jing
name: Xu, Xiaoming
name: Zhang, Zhibin
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 18: Table S13. Difference in alpha diversity of gut microbiota between the Con and Ab groups, Con and F-LD groups, Con and F-SD groups, Ab and F-LD groups, Ab and F-SD groups, and F-LD and F-SD groups in the FMT experiment.
An Improved Analysis of Gradient Tracking for Decentralized Machine Learning
Creators: name: Koloskova, Anastasia
name: Lin, Tao
name: Stich, Sebastian U.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Distributed, Parallel, and Cluster Computing (cs.DC)
subject: Machine Learning (cs.LG)
subject: Optimization and Control (math.OC)
subject: FOS: Computer and information sciences
subject: FOS: Mathematics
subject: G.1.6; F.2.1
subject: 68W10, 68W15, 68W40, 90C06, 90C35

description: We consider decentralized machine learning over a network where the training data is distributed across $n$ agents, each of which can compute stochastic model updates on their local data. The agent's common goal is to find a model that minimizes the average of all local loss functions. While gradient tracking (GT) algorithms can overcome a key challenge, namely accounting for differences between workers' local data distributions, the known convergence rates for GT algorithms are not optimal with respect to their dependence on the mixing parameter $p$ (related to the spectral gap of the connectivity matrix). We provide a tighter analysis of the GT method in the stochastic strongly convex, convex and non-convex settings. We improve the dependency on $p$ from $\mathcal{O}(p^{-2})$ to $\mathcal{O}(p^{-1}c^{-1})$ in the noiseless case and from $\mathcal{O}(p^{-3/2})$ to $\mathcal{O}(p^{-1/2}c^{-1})$ in the general stochastic case, where $c \geq p$ is related to the negative eigenvalues of the connectivity matrix (and is a constant in most practical applications). This improvement was possible due to a new proof technique which could be of independent interest.
description: published at NeurIPS 2021
Bryconamericus iheringii
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Characiformes
Characidae
Bryconamericus
Bryconamericus iheringii

description: Bryconamericus aff. iheringii (Boulenger, 1887) Fig. 11 Body deep; greatest body depth contained 2.7 to 2.9 and caudal peduncle depth 8.4 to 9.7 times in SL; head length 4.5 to 4.7, predorsal distance 1.7 to 1.9, and caudal peduncle length 7.6 to 8.1; snout length 3.7 to 3.9, horizontal orbital diameter 2.4 to 2.6 and interorbital distance 3.0 to 3.2 in HL. Mouth subterminal; inner row of premaxilla with 4, outer row with 4 or 5, dentary with 9-11, and maxilla with 3 or 4 teeth. Lateral line with 34-36 pored scales; transverse series above lateral line with 5 or 5½ rows and below with 4-5½ scale rows. Dorsal fin with 12 or 13, pectoral fin with 15, pelvic fin with 9, anal fin rays 22-24, and caudal with 19 rays. Ground color silvery to yellowish; black rounded or vertically elongated humeral spot; silvery longitudinal band (brown or grey in fixed specimens), from humeral spot to median caudal-fin rays. Yellowish or reddish fins (Graça, Pavanelli, 2007). Maximum standard length. 60.0 mm (Graça, Pavanelli, 2007). Distribution. Rio Paraná and rio Uruguay basins, and Laguna dos Patos drainage.
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on page 40, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
description: {"references": ["Pavanelli CS, Graca WJ, Zawadzki CH, Britski HA, Vidotti AP, Avelino GS, Verissimo S. Fishes from the Corumba Reservoir, Paranaiba River drainage, upper rio Parana basin, State of Goias, Brazil. Check List. 2007; 3 (1): 58 - 64."]}
Mass spectrometric characterisation of immunologically important glycosylation
Creators: name: Lu, Dongli
Publisher: name: Imperial College London
Year: 2019

description: Glycosylation is a vital modification for many macro-biomolecules to obtain structural heterogeneity and functional diversity. In the immune system, nearly all engaged molecules are glycosylated, and their glycosylation status directly correlates with their functions. Therefore, structural studies of glycosylation are important and fundamental to allow understanding of the basic mechanisms underlying the immune system. In this thesis, comprehensive mass spectrometric based glycomic and glycoproteomic strategies were applied to investigate the glycosylation of the following immunologically important glycoproteins and animal models: pregnancy specific glycoprotein 1 (PSG1), canine melanoma, fragment crystallisable (Fc) fusion protein and cryoglobulins. Glycomic and glycoproteomic studies of native PSG1 showed that four of the seven N-glycosylation sites on this protein were occupied by glycans, which were dominated by mono- and bi-antennary complex structures with sialylation and partial core-fucosylation. N-glycosylation of recombinant N-terminal domain of PSG1 from Chinese Hamster Ovary (CHO) systems differs from the native materials for universal core-fucosylation and extensive poly-LacNAc elongation. N-glycosylation of the new Expi-CHO system was characterised as abundant truncated multi-antennary complex structures. Analysis of the glycoprotein and glycolipid glycans expressed by stage III canine melanoma cells indicates that the glycosylation of this animal model is highly consistent with that of human melanoma with an exception of species-specific expression of Gal-α-Gal epitopes. These results support the idea that canine melanoma should be an excellent animal model for the pre-clinical studies of melanoma. Glycomic studies of the Fc fusion protein with engineered additional N-glycosylation sites indicated an improvement of sialylation and branching on N-glycans in a CHO cell system. Identical fusion proteins expressed in a HEK293 cell system exhibited more diverse epitopes and considerable antennary truncation. Finally, analysis of the N-glycosylation of cryoglobulin indicated that glycosylation might not play a vital role in the formation of the cryoprecipitate of mixed-type cryoglobulins.
Additional file 1 of CPEB3 inhibits epithelial-mesenchymal transition by disrupting the crosstalk between colorectal cancer cells and tumor-associated macrophages via IL-6R/STAT3 signaling
Creators: name: Zhong, Qian
name: Fang, Yuxin
name: Lai, Qiuhua
name: Wang, Shanci
name: He, Chengcheng
name: Li, Aimin
name: Liu, Side
name: Yan, Qun
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer

description: Additional file 1.
An optimized TEM specimen preparation method of quantum nanostructures
Creators: name: Wang, Hongguang
name: Srot, Vesna
name: Fenk, Bernhard
name: Laskin, Gennadii
name: Mannhart, Jochen
name: van Aken, Peter A.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Electron transparent TEM lamella with unaltered microstructure and chemistry is the prerequisite for successful TEM explorations. Currently, TEM specimen preparation of quantum nanostructures, such as quantum dots (QDs), remains a challenge. In this work, we optimize the sample-preparation routine for achieving high-quality TEM specimens consisting of SrRuO3 (SRO) QDs grown on SrTiO3 (STO) substrates. We demonstrate that a combination of ion-beam-milling techniques can produce higher-quality specimens of quantum nanostructures compared to TEM specimens prepared by a combination of tripod polishing followed by Ar+ ion milling. In the proposed method, simultaneous imaging in a focused ion-beam device enables accurate positioning of the QD regions and assures the presence of dots in the thin lamella by cutting the sample inclined by 5° relative to the dots array. Furthermore, the preparation of TEM lamellae with several large electron-transparent regions that are separated by thicker walls effectively reduces the bending of the specimen and offers broad thin areas. The final use of a NanoMill efficiently removes the amorphous layer without introducing any additional damage.
description: 20 pages, 6 figures, 1 table
CORBEL Report on Common Access Framework Concept
Creators: name: Haley, Natalie
Publisher: name: Zenodo
Year: 2019
Subjects: Research Infrastructures
Common access framework
Regulatory access policies

description: This deliverable presents the Common Access Framework developed within CORBEL work package 5 to manage seamless access to multiple research infrastructures within individual research projects. The ARIA (Access to Research Infrastructure Administration) access management software, developed in-house by Instruct-ERIC to manage their own user access, was adapted to meet the specifications of the CORBEL project and provide a pilot platform for accessing multiple biomedical science Research Infrastructures (RIs) in CORBEL. The platform was tested by scientists belonging to the different scientific communities with research questions at the boundaries of the different research infrastructures through the First CORBEL Open Call which from October 2016 – December 2016. Following the First Open Call, feedback was collected on all areas of infrastructure access through CORBEL, including the WP5 common access pilot platform in ARIA. WP5 used this feedback to improve the platform and, due to the scientific success of the First Open Call, a Second CORBEL Open Call was launched in March 2018 using the ARIA system with these improvements.

In addition to the ARIA platform which enables common access to physical infrastructure and expertise, WP5 worked on a pilot concept for a common authentication and authorisation tool, with the aim to establish an authentication and authorisation infrastructure (AAI) which meets the combined requirements of the biomedical science infrastructures, such that a scientist would be able to access resources with a single unified identity and single sign on. This work culminated in a pilot Life Science AAI, jointly with the AARC2 project where CORBEL WP5 provided the use cases and technical specifications required for the AAI and AARC2 e-infrastructures provided the AAI components and operated the pilot AAI. As a result of this work we plan to continue collaborative efforts with the e-infrastructures to bring into production a full Life Science AAI which will be supported by the EOSC-Life project starting in March 2019.
Additional file 1 of Tandem mass tag-based (TMT) quantitative proteomics analysis reveals the response of fine roots to drought stress in cotton (Gossypium hirsutum L.)
Creators: name: Xiao, Shuang
name: Liu, Liantao
name: Zhang, Yongjiang
name: Sun, Hongchun
name: Zhang, Ke
name: Bai, Zhiying
name: Dong, Hezhong
name: Liu, Yuchun
name: Li, Cundong
Publisher: name: figshare
Year: 2020
Subjects: subject: Plant Biology
subject: FOS: Biological sciences

description: Additional file 1: Figure S1. Aboveground morphological responses to drought. Changes of palnt height (A), stem diameter (B), total leaf area (C), and leaf thickness (D) of cotton during stress. Each data point represents the mean of five independent biological replicates (mean ± SD). *Represents a statistically significant difference when compared with the control (*P < 0.05; **P < 0.01).
Dynamics of transneptunian objects under the influence of a rogue planet
Creators: name: Huang, Yukun
Publisher: name: University of British Columbia
Year: 2023

description: Over the past two decades, our knowledge of the Solar System’s transneptunian region (often called the Kuiper Belt) has been gradually increasing. Observational surveys have greatly expanded the inventory of Trans-Neptunian Objects (TNOs), which are distant icy bodies thought to be relics from the giant planet formation era. In the main Kuiper Belt region, a complex bimodal inclination structure is present, leading to the common assertion that current TNOs may have accreted in different regions of the protoplanetary disk. To study this blended inclination structure, I develop an improved semi-analytical method to compute TNO ‘free’ inclinations, which are well conserved and thus better represent the primordial inclination profile. In the implanted Kuiper Belt, a semimajor axis power law distribution is observed in the outer Solar System surveys. I show that in a patched-conic model, the power law is a natural outcome after multiple flybys of the perturbing planet homogenize the directions of planetary relative-velocity vectors. This model allows one to analytically compute the diffusion coefficient in closed form. In the distant Kuiper Belt, several striking features seem to challenge our previous understanding of the early Solar System: 1) a very large population of objects in distant mean-motion resonances with Neptune, 2) a substantial detached population that are not dynamically coupled with Neptune’s effects, and 3) the existence of three very-large perihelion objects. I demonstrated in this thesis, that a super-Earth-mass planet temporarily present in the Solar System on a Neptune crossing orbit (referred to as a ‘Rogue Planet’), is able to create all these structures in the distant Kuiper Belt. Such a planet would have formed in the giant planet region and gotten scattered to a highly-eccentric orbit with a few hundred au semimajor axis with a typical lifetime of 100 Myr. Additionally, I showed this transient planet would not have heated the cold belt’s very low free inclinations to larger than observed. Both the structures in the distant belt and the existence of an unheated cold belt provide constraints to narrow down the mass and possible dynamical histories the rogue might have taken.
Bryconamericus turiuba Langeani, Lucena, Pedrini, Tarelho-Pereira 2005
Creators: name: Ota, Renata Rúbia
name: Deprá, Gabriel de Carvalho
name: Graça, Weferson Júnio da
name: Pavanelli, Carla Simone
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Chordata
Actinopterygii
Characiformes
Characidae
Bryconamericus
Bryconamericus turiuba

description:  Bryconamericus turiuba Langeani, Lucena, Pedrini, Tarelho-Pereira, 2005 Fig. 11 Body elongated; greatest body depth contained 3.3 to 4.2 and caudal peduncle depth 8.6 to 11.5 times in SL; head length 3.5 to 4.7, predorsal distance 1.8 to 2.1, and caudal peduncle length 5.6 to 7.1 in SL; snout length 2.8 to 4.6, horizontal orbital diameter 2.5 to 3.3 and least interorbital width 2.7 to 4.2 in HL. Mouth terminal; inner row of premaxilla with 4 teeth, outer row with 4 or 5, rarely 3 teeth; dentary with 3 or 4 teeth, and maxilla with 2-5 teeth. Lateral line with 37-43 pored scales; transverse series above lateral line with 4 or 5 rows and below with 3 or 4 scale rows. Dorsal fin with 10, rarely 9 or 11, pectoral fin with 11-14, pelvic fin 8, rarely 7 or 9, anal fin with 17-23, and caudal with 16 or 17 rays (Langeani et al., 2005). Ground color pale yellow; dorsal profile with dark-brown longitudinal band, from snout to caudal fin; humeral spot conspicuous and vertically elongated; silver longitudinal band (brown or grey in fixed specimens), from humeral spot to median caudal-fin rays. Fins scattered with dark-brown spots. Maximum standard length. 61.0 mm. Biological data. Lives in rapids, with rocky bottom, and lentic pools, with gravel bottom or sand and mud (Langeani et al., 2005). Distribution. Upper rio Paraná basin.
description: Published as part of Ota, Renata Rúbia, Deprá, Gabriel de Carvalho, Graça, Weferson Júnio da & Pavanelli, Carla Simone, 2018, Peixes da planície de inundação do alto rio Paraná e áreas adjacentes: revised, annotated and updated, pp. 1-111 in Neotropical Ichthyology 16 (2) on page 40, DOI: 10.1590/1982-0224-20170094, http://zenodo.org/record/3678395
description: {"references": ["Langeani F, Lucena ZMS, Pedrini JL, Tarelho Pereira FJ. Bryconamericus turiuba, a new species from the upper rio Parana system (Ostariophysi: Characiformes). Copeia. 2005; (2): 386 - 92."]}