cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
The future of sleep health: a data-driven revolution in sleep science and medicine
Creators: name: Perez-Pozuelo, Ignacio
name: Zhai, Bing
name: Palotti, Joao
name: Mall, Raghvendra
name: Aupetit, Michaël
name: Garcia-Gomez, Juan M.
name: Taheri, Shahrad
name: Guan, Yu
name: Fernandez-Luque, Luis
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Review Article
/692/700/459/1748
/639/166/985
/692/53/2421
/631/378/1385/519
/692/53/2423
review-article

description: Abstract: In recent years, there has been a significant expansion in the development and use of multi-modal sensors and technologies to monitor physical activity, sleep and circadian rhythms. These developments make accurate sleep monitoring at scale a possibility for the first time. Vast amounts of multi-sensor data are being generated with potential applications ranging from large-scale epidemiological research linking sleep patterns to disease, to wellness applications, including the sleep coaching of individuals with chronic conditions. However, in order to realise the full potential of these technologies for individuals, medicine and research, several significant challenges must be overcome. There are important outstanding questions regarding performance evaluation, as well as data storage, curation, processing, integration, modelling and interpretation. Here, we leverage expertise across neuroscience, clinical medicine, bioengineering, electrical engineering, epidemiology, computer science, mHealth and human–computer interaction to discuss the digitisation of sleep from a inter-disciplinary perspective. We introduce the state-of-the-art in sleep-monitoring technologies, and discuss the opportunities and challenges from data acquisition to the eventual application of insights in clinical and consumer settings. Further, we explore the strengths and limitations of current and emerging sensing methods with a particular focus on novel data-driven technologies, such as Artificial Intelligence.
Additional file 1 of Providers’ insight into quality mental health services – Context-Mechanism-Outcome (CMO) approach
Creators: name: Badu, Eric
name: O’Brien, Anthony Paul
name: Mitchell, Rebecca
name: Osei, Akwasi
Publisher: name: figshare
Year: 2025
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Supplementary Material 1.
Does Foreign Exchange Intervention Matter? Disentangling the Portfolio and Expectations Effects
Creators: name: Dominguez, Kathryn M.
name: Frankel, Jeffrey A.
name: Dominguez, Kathryn M.
name: Frankel, Jeffrey A.
Publisher: name: Unknown
Year: 1992
Subjects: subject: International Relations/Trade
subject: foreign exchange
subject: intervention
subject: portfolio balance
subject: dollar
subject: mark

description: The time is ripe for a re-examination of the question whether foreign exchange intervention can affect the exchange rate. We attempt to isolate two distinct effects: the portfolio effect, whereby an increase in the supply of marks must reduce the dollar/mark rate (for given expected rates of return) and the additional expectations effect, whereby intervention that is publicly known may alter investors' expectations of the future exchange rate, which will feed back to the current equilibrium price. We estimate a system consisting of two equations, one describing investors' portfolio behavior and the other their formation of expectations, where the two endogenous variables are the current spot rate and investors' expectation of the future spot rate. We use new data sources: actual daily data on intervention by the Fed, the Bundesbank, and the Swiss National Bank, newspaper stories on exchange rate policy announcements and known intervention, and survey data on investors' expectations. We find evidence of both an expectations effect and a portfolio effect. The statistical significance of the portfolio effect suggests that even sterilized intervention may have had positive effects during the sample period. For the magnitude of the effects to be large requires that intervention be publicly known.
Reentrant liquid condensate phase of proteins is stabilized by hydrophobic and non-ionic interactions
Creators: name: Krainer, Georg
name: Welsh, Timothy J.
name: Joseph, Jerelle A.
name: Espinosa, Jorge R.
name: Wittmann, Sina
name: De Csilléry, Ella
name: Sridhar, Akshay
name: Toprakcioglu, Zenon
name: Gudiškytė, Giedre
name: Czekalska, Magdalena A.
name: Arter, William E.
name: Guillén-Boixet, Jordina
name: Franzmann, Titus M.
name: Qamar, Seema
name: George-Hyslop, Peter St
name: Hyman, Anthony A.
name: Collepardo-Guevara, Rosana
name: Alberti, Simon
name: Knowles, Tuomas P. J.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Article
/631/45/612
/631/57
/631/57/2269
/639/638/440/56
/639/766/747
/9
/14/35
/119
/14/63
/82/83
/132
/119/118
article

description: Funder: See Main Article file (Acknowledgments section).
description: Abstract: Liquid–liquid phase separation of proteins underpins the formation of membraneless compartments in living cells. Elucidating the molecular driving forces underlying protein phase transitions is therefore a key objective for understanding biological function and malfunction. Here we show that cellular proteins, which form condensates at low salt concentrations, including FUS, TDP-43, Brd4, Sox2, and Annexin A11, can reenter a phase-separated regime at high salt concentrations. By bringing together experiments and simulations, we demonstrate that this reentrant phase transition in the high-salt regime is driven by hydrophobic and non-ionic interactions, and is mechanistically distinct from the low-salt regime, where condensates are additionally stabilized by electrostatic forces. Our work thus sheds light on the cooperation of hydrophobic and non-ionic interactions as general driving forces in the condensation process, with important implications for aberrant function, druggability, and material properties of biomolecular condensates.
Additional file 1 of PDCD6 cooperates with C-Raf to facilitate colorectal cancer progression via Raf/MEK/ERK activation
Creators: name: Wang, Xiaojuan
name: Wu, Fan
name: Wang, Han
name: Duan, Xiaoyuan
name: Huang, Rong
name: Tuersuntuoheti, Amannisa
name: Su, Luying
name: Yan, Shida
name: Zhao, Yuechao
name: Lu, Yan
name: Li, Kai
name: Yao, Jinjie
name: Luo, Zhiwen
name: Guo, Lei
name: Liu, Jianmei
name: Chen, Xiao
name: Lu, Yalan
name: Hu, Hanjie
name: Li, Xingchen
name: Bao, Mandula
name: Bi, Xinyu
name: Du, Boyu
name: Miao, Shiying
name: Cai, Jianqiang
name: Wang, Linfang
name: Zhou, Haitao
name: Ying, Jianming
name: Song, Wei
name: Zhao, Hong
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biological Sciences not elsewhere classified
subject: Information Systems not elsewhere classified
subject: Cancer

description: Additional file 1: Figure S1. The PDCD6 expression in different patient samples from the GEPIA database of different kinds of diseases. Figure S2a. PDCD6-KD and c-Raf-KD inhibited the MAPK pathway. Figure S2b. Combined downregulation of PDCD6 with oxiliplatin effect on cell proliferation in HCT116 and HCT15. Figure S2c. Cell proliferation assays on RAF709 and Trametinib treatment. Figure S2d. Colony formation assays on RAF709 and Trametinib treatment. Figure S3a. Representative immunohistochemistry images of the expression of p-c-Raf, p-MEK, c-Caspase 3 and p-Stat 3 in xenograft tumors from nude mice subcutaneously injected with HCT116 cells. *, P < 0.05. Figure S3b. HE staining showed the influences of PDCD6-KD and PDCD6-OE on mice tumor samples. Table S1. Characteristics of 93 patients with colorectal cancer included in the study. Table S2. For the knockdown of human PDCD6-specific shRNAs. Table S3. For the knockdown of human PDCD6-siRNA and c-Raf-siRNA. Table S4. Oligonucleotide sequences used in reverse-transcription PCR and real-time PCR.
The Evolving Japanese Financial System, and the Cost of Capital
Creators: name: Frankel, Jeffrey A.
name: Frankel, Jeffrey A.
Publisher: name: Unknown
Year: 1992
Subjects: subject: International Development
subject: cost of capital
subject: Japanese finance
subject: main bank
subject: financial liberalization

description: The paper surveys the extensive literature on whether Japanese corporations in the 1980s were able to finance investment more easily than Americans. Along the way, it considers: the leverage of Japanese firms, dividend payout, equity price/earnings ratios, corporate taxation, cross-ownership, speculative bubbles, international capital mobility, the lower cost of financing investment internally and through "main bank" relationships, and the move to a more market-oriented system as these relationships, and the move to a more market-oriented system as these relationships appeared to break down in the 1980s. The conclusion that emerges from the literature is that the cost of finance in the 1980s was indeed lower in Japan than in the United States, by a variety of measures. But trends of domestic and international liberalization, followed by the events of 1990-92, have now raised the cost of capital in Japan to the U.S. market level. Some unanswered questions remain, regarding the reported shifts in reliance by firms between banking relationships versus securities markets.
Excited Heavy Baryons and Their Symmetries III: Phenomenology
Creators: name: Baccouche, Z. Aziza
name: Chow, Chi-Keung
name: Cohen, Thomas D.
name: Gelman, Boris A.
Publisher: name: arXiv
Year: 2001
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: Phenomenological applications of an effective theory of low-lying excited states of charm and bottom isoscalar baryons are discussed at leading and next-to-leading order in the combined heavy quark and large $N_c$ expansion. The combined expansion is formulated in terms of the counting parameter $λ\sim 1/m_Q, 1/N_c$; the combined expansion is in powers of $λ^{1/2}$. We work up to next-to-leading order. We obtain model-independent predictions for the excitation energies, the semileptonic form factors and electromagnetic decay rates. The spin-averaged mass of the doublet of the first orbitally excited sate of $Λ_b$ is predicted to be approximately $5920 MeV$. It is shown that in the combined limit at leading and next-to-leading order there is only one independent form factor describing $Λ_b \to Λ_c \ell \barν$; similarly, $Λ_b \to Λ_{c}^{*} \ell \barν$ and $Λ_b \to Λ_{c1} \ell \barν$ decays are described by a single independent form factor. These form factors are calculated at leading and next-to-leading order in the combined expansion. The electromagnetic decay rates of the first excited states of $Λ_c$ and $Λ_b$ are determined at leading and next-to leading order. The ratio of radiative decay rates $Γ(Λ_{c}^{*} \to Λ_c γ) / Γ(Λ_{b1} \to Λ_b γ)$ is predicted to be approximately 0.2, greatly different from the heavy quark effective theory value of unity.
description: 21 pages, 2 figures
Interplay between shape-phase transitions and shape coexistence in the Zr isotopes
Creators: name: Gavrielov, N.
name: Leviatan, A.
name: Iachello, F.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We investigate the evolution of structure in the zirconium isotopes where one of the most complex situations encountered in nuclear physics occurs. We demonstrate the role of two concurrent types of quantum phase transitions, sharing a common critical point. The first type, involves an abrupt crossing of coexisting normal and intruder configurations. The second type, involves a gradual shape-phase transition within the intruder configuration, changing from weakly-deformed to prolate-deformed and finally to gamma-unstable. Evidence for this scenario is provided by a detailed comparison with experimental data, using a definite algebraic framework.
description: 16 pages, 9 figures, Final version, Physica Scripta Focus Issue on Nuclear Shapes and Symmetries: From Experiment to Theory. arXiv admin note: substantial text overlap with arXiv:1904.09919
Ranatra heydeni Montandon 1909
Creators: name: Moreira, Felipe Ferraz Figueiredo
name: Barbosa, Julianna Freires
name: Ribeiro, José Ricardo Inacio
name: Alecrim, Viviani Pereira
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Nepidae
Ranatra
Ranatra heydeni

description: Ranatra heydeni Montandon, 1909
Geographical distribution: Brazil and Argentina.
Distribution in Brazil: Southeast Region (MG) (Nieser & Melo 1997; Melo & Nieser 2004).
description: Published as part of Moreira, Felipe Ferraz Figueiredo, Barbosa, Julianna Freires, Ribeiro, José Ricardo Inacio & Alecrim, Viviani Pereira, 2011, Checklist and distribution of semiaquatic and aquatic Heteroptera (Gerromorpha and Nepomorpha) occurring in Brazil 2958, pp. 1-74 in Zootaxa 2958 (1) on page 50, DOI: 10.11646/zootaxa.2958.1.1, http://zenodo.org/record/5281851
Arbitration in International Trade
Creators: name: Casella, Alessandra
name: Casella, Alessandra
Publisher: name: Unknown
Year: 1992
Subjects: subject: International Relations/Trade
subject: arbitration
subject: international trade law
subject: international economic integration

description: The great majority of international contracts provides that eventual disputes should be decided by arbitration. Legal scholars argue that international arbitration is leading to the development of a legal doctrine attuned to the needs of business and independent of national laws. This paper studies international arbitration as a beautiful example of the role of private trade in shaping international institutions. We review the provisions and the practice of international arbitration, and present a general equilibrium model of the relationship between the expansion of international trade and the adoption of arbitration. The model focusses on the heterogeneity existing among economic agents in terms of their legal needs. It shows how arbitration alters the size and composition of markets, while at the same time responding to exogenous changes in trade. In addition, it shows how the legal services provided by the courts deteriorate in the presence of arbitration and predicts that the share of traders using arbitration should rise as markets expand. Overall, the model does remarkably well in generating results commonly discussed in the legal literature.
Additional file 1 of Structural equation modelling the relationship between anti-fungal prophylaxis and Pseudomonas bacteremia in ICU patients
Creators: name: Hurley, James C.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer

description: Additional file 1: Table S1. Observational studies (Benchmark groups). Table S2. Groups of non-decontamination studies. Table S3. Groups of anti-septic studies. Table S4. Groups of antibiotic-based (= TAP ± PPAP ± antifungal) studies. Table S5. Groups from single drug anti-fungal (SAF) studies. Table S6. Review of effect sizes in the literature. Fig S1. a & b. Pseudomonas; VAP and bacteremia count data. Fig S2. a & b. Candidemia and RT candida count data. Fig S3. Effect size VAP Pseudomonas. Fig S4. Effect size Pseudomonas bacteremia. Fig S5. Effect size RT candida. Fig S6. Effect size Candidemia. Figs. S7, S8. GSEM model C & GSEM model B.
Parametric Verification: An Introduction
Creators: name: André, Étienne
name: Knapik, Michał
name: Lime, Didier
name: Penczek, Wojciech
name: Petrucci, Laure
Publisher: name: arXiv
Year: 2019
Subjects: subject: Logic in Computer Science (cs.LO)
subject: Software Engineering (cs.SE)
subject: FOS: Computer and information sciences

description: This paper constitutes a short introduction to parametric verification of concurrent systems. It originates from two 1-day tutorial sessions held at the Petri nets conferences in Toruń (2016) and Zaragoza (2017). The paper presents not only the basic formal concepts tackled in the video version, but also an extensive literature to provide the reader with further references covering the area. We first introduce motivation behind parametric verification in general, and then focus on different models and approaches, for verifying several kinds of systems. They include Parametric Timed Automata, for modelling real-time systems, where the timing constraints are not necessarily known a priori. Similarly, Parametric Interval Markov Chains allow for modelling systems where probabilities of events occurrences are intervals with parametric bounds. Parametric Petri Nets allow for compact representation of systems, and cope with different types of parameters. Finally, Action Synthesis aims at enabling or disabling actions in a concurrent system to guarantee some of its properties. Some tools implementing these approaches were used during hands-on sessions at the tutorial. The corresponding practicals are freely available on the Web.
description: This is the author version of the manuscript of the same name published in the Transactions on Petri Nets and Other Models of Concurrency (ToPNoC). This work is partially supported by the ANR national research program PACS (ANR-14-CE28-0002)
Effects Of The EU Nitrate Directive for the Dutch Agricultural Sector: an Application of a Regional Model of Dutch Agriculture Based on Positive Mathematical Programming
Creators: name: Helming, John
name: Peerlings, Jack
name: Helming, John
name: Peerlings, Jack
Publisher: name: Unknown
Year: 2005
Subjects: subject: Agricultural and Food Policy
subject: Research Methods/ Statistical Methods
subject: Positive Mathematical Programming
subject: agriculture
subject: regions
subject: manure markets
subject: manure policies.

description: This paper applies the Dutch Regionalized Agricultural Model (DRAM) to analyze the effects of Dutch manure and nutrients policies of 2004 for the Dutch agricultural sector and economy as compared to a base of 1996. DRAM can be characterized as a regionalised, environmental, partial equilibrium, mathematical programming model of Dutch agriculture. The model combines the technical detail, including technology options available to farmers in different regions of the Netherlands, of mathematical programming farm models with some market effects at agricultural industry level e.g. land and manure markets. Moreover the mathematical programming model is linked to a mixed input-output model to analyze economy wide effects of changes in Dutch agriculture. A special feature of DRAM is the explicit modeling of manure markets. It is found that through increased manure prices, manure policies specially affects production and profits in the beef and pigs and poultry sectors.
MOESM6 of Of microbes and mange: consistent changes in the skin microbiome of three canid species infected with Sarcoptes scabiei mites
Creators: name: DeCandia, Alexandra
name: Leverett, Kennedy
name: VonHoldt, Bridgett
Publisher: name: figshare
Year: 2019
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Physiology
subject: Ecology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 6: Figure S3. Principal coordinates analysis showed significant differences between infection groups using both a unweighted and b weighted UniFrac distances.
Restricted Connection Orthogonal Matching Pursuit For Sparse Subspace Clustering
Creators: name: Zhu, Wenqi
name: Zhu, Yuesheng
name: Zhong, Li
name: Yang, Shuai
Publisher: name: arXiv
Year: 2019
Subjects: subject: Machine Learning (cs.LG)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: Sparse Subspace Clustering (SSC) is one of the most popular methods for clustering data points into their underlying subspaces. However, SSC may suffer from heavy computational burden. Orthogonal Matching Pursuit applied on SSC accelerates the computation but the trade-off is the loss of clustering accuracy. In this paper, we propose a noise-robust algorithm, Restricted Connection Orthogonal Matching Pursuit for Sparse Subspace Clustering (RCOMP-SSC), to improve the clustering accuracy and maintain the low computational time by restricting the number of connections of each data point during the iteration of OMP. Also, we develop a framework of control matrix to realize RCOMP-SCC. And the framework is scalable for other data point selection strategies. Our analysis and experiments on synthetic data and two real-world databases (EYaleB & Usps) demonstrate the superiority of our algorithm compared with other clustering methods in terms of accuracy and computational time.
Economic Impact of the Mid-Term Review on Agricultural Production, Farm Income and Farm Survival: a Quantitative Analysis for Local Sub-Regions of Schleswig-Holstein in Germany
Creators: name: Henningsen, Arne
name: Henning, Christian
name: Struve, Carsten
name: Mueller-Scheessel, Joerg
name: Henningsen, Arne
name: Henning, Christian
name: Struve, Carsten
name: Mueller-Scheessel, Joerg
Publisher: name: Unknown
Year: 2005
Subjects: subject: Agricultural and Food Policy
subject: Research Methods/ Statistical Methods
subject: policy reform
subject: modeling production adjustment
subject: farm income
subject: structural change

description: This study analyzes the impact of the Mid-Term Review (MTR) on the agricultural sector in Schleswig-Holstein, a federal state in Germany. First, a very detailed farm group linear programming model is built to quantify the effects on agricultural production and farm incomes. The production adjustment to the MTR and its impact on farm profit vary significantly between individual farms. These results depend mainly on the farm type and the resource endowments of the farms. Second, the impact on structural change is examined with a farm survival model. Although the MTR clearly reduces the incomes of several farm types, it accelerates the structural change only gradually.
Superstatistical approach to air pollution statistics
Creators: name: Williams, Griffin
name: Schäfer, Benjamin
name: Beck, Christian
Publisher: name: arXiv
Year: 2019
Subjects: subject: Data Analysis, Statistics and Probability (physics.data-an)
subject: FOS: Physical sciences

description: Air pollution by Nitrogen Oxides (NOx) is a major concern in large cities as it has severe adverse health effects. However, the statistical properties of air pollutants are not fully understood. Here, we use methods borrowed from nonequilibrium statistical mechanics to construct suitable superstatistical models for air pollution statistics. In particular, we analyze time series of Nitritic Oxide ($NO$) and Nitrogen Dioxide ($NO_2$) concentrations recorded at several locations throughout Greater London. We find that the probability distributions of concentrations have heavy tails and that the dynamics is well-described by $χ^2$ superstatistics for $NO$ and inverse $χ^2$ superstatistics for $NO_2$. Our results can be used to give precise risk estimates of high-pollution situations and pave the way to mitigation strategies.
description: 10 pages, including the appendices
Simulating Observations of Dark Matter Dominated Galaxies: Towards the Optimal Halo Profile
Creators: name: de Blok, W. J. G.
name: Bosma, A.
name: McGaugh, S. S.
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Low Surface Brightness (LSB) galaxies are dominated by dark matter, and their rotation curves thus reflect their dark matter distribution. Recent high-resolution rotation curves suggest that their dark matter mass-density distributions are dominated by a constant-density core. This seems inconsistent with the predictions of Cold Dark Matter (CDM) models which produce halos with compact density cusps and steep mass-density profiles. However, the observationally determined mass profiles may be affected by non-circular motions, asymmetries and offsets between optical and dynamical centres, all of which tend to lower the observed slopes. Here we determine the impact of each of these effects on a variety of halo models, and compare the results with observed mass-density profiles. Our simulations suggest that no single systematic effect can reconcile the data with the cuspy CDM halos. The data are best described by a model with a soft core with an inner power-law mass-density slope alpha = -0.2 +/- 0.2. However, no single universal halo profile provides a completely adequate description of the data.
description: Accepted for publication in MNRAS; small problem with figure numbering fixed
Ranatra horvathi Montandon 1910
Creators: name: Moreira, Felipe Ferraz Figueiredo
name: Barbosa, Julianna Freires
name: Ribeiro, José Ricardo Inacio
name: Alecrim, Viviani Pereira
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Nepidae
Ranatra
Ranatra horvathi

description: Ranatra horvathi Montandon, 1910
Geographical distribution: Brazil.
 Distribution in Brazil: Central-West and Southeast regions (MG, MS, SP, RJ) (De Carlo 1964; Nieser & Melo 1997; Ribeiro et al. 2010).
description: Published as part of Moreira, Felipe Ferraz Figueiredo, Barbosa, Julianna Freires, Ribeiro, José Ricardo Inacio & Alecrim, Viviani Pereira, 2011, Checklist and distribution of semiaquatic and aquatic Heteroptera (Gerromorpha and Nepomorpha) occurring in Brazil 2958, pp. 1-74 in Zootaxa 2958 (1) on page 50, DOI: 10.11646/zootaxa.2958.1.1, http://zenodo.org/record/5281851
XPS spectrum of scan survey of Fe@CNTs@Pd (a), C1s high-resolution spectrum of Fe@CNTs@Pd (b). from Preparation of palladized carbon nanotubes encapsulated iron composites: highly efficient dechlorination for trichloroethylene and low corrosion of nanoiron
Creators: name: Wang, Xinyu
name: Wang, Wei
name: Lowry, Greg
name: Li, Xiaoyan
name: Guo, Yajie
name: Li, Tielong
Publisher: name: The Royal Society
Year: 2018

description: Wang Xinyu Figures1 XPS spectrum ESM
MOESM5 of Of microbes and mange: consistent changes in the skin microbiome of three canid species infected with Sarcoptes scabiei mites
Creators: name: DeCandia, Alexandra
name: Leverett, Kennedy
name: VonHoldt, Bridgett
Publisher: name: figshare
Year: 2019
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Physiology
subject: Evolutionary Biology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Computational Biology

description: Additional file 5: Figure S2. Principal coordinates analysis of a uninfected individuals (five samples per canid) using phylogeny-based unweighted UniFrac distances and b all individuals (one composite sample per canid) using Bray-Curtis dissimilarity index show minimal evidence of clustering by sex (females, no outline; males, black outline; unknown, gray outline).
Dynamic meta-analysis: a method of using global evidence for local decision making
Creators: name: Shackelford, Gorm E.
name: Martin, Philip A.
name: Hood, Amelia S. C.
name: Christie, Alec P.
name: Kulinskaya, Elena
name: Sutherland, William J.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2021
Subjects: Methodology Article
Research Synthesis and Meta-research in Biology
Applicability
Conservation evidence
Dynamic meta-analysis
External validity
Generalisability
Knowledge transfer
Recalibration
Subject-wide evidence synthesis
Systematic reviews
Transferability

description: Funder: David and Claudia Harding Foundation
description: Funder: A.G. Leventis Foundation; doi: http://dx.doi.org/10.13039/501100004117
description: Funder: Arcadia Fund; doi: http://dx.doi.org/10.13039/100012088
description: Abstract: Background: Meta-analysis is often used to make generalisations across all available evidence at the global scale. But how can these global generalisations be used for evidence-based decision making at the local scale, if the global evidence is not perceived to be relevant to local decisions? We show how an interactive method of meta-analysis—dynamic meta-analysis—can be used to assess the local relevance of global evidence. Results: We developed Metadataset (www.metadataset.com) as a proof-of-concept for dynamic meta-analysis. Using Metadataset, we show how evidence can be filtered and weighted, and results can be recalculated, using dynamic methods of subgroup analysis, meta-regression, and recalibration. With an example from agroecology, we show how dynamic meta-analysis could lead to different conclusions for different subsets of the global evidence. Dynamic meta-analysis could also lead to a rebalancing of power and responsibility in evidence synthesis, since evidence users would be able to make decisions that are typically made by systematic reviewers—decisions about which studies to include (e.g. critical appraisal) and how to handle missing or poorly reported data (e.g. sensitivity analysis). Conclusions: In this study, we show how dynamic meta-analysis can meet an important challenge in evidence-based decision making—the challenge of using global evidence for local decisions. We suggest that dynamic meta-analysis can be used for subject-wide evidence synthesis in several scientific disciplines, including agroecology and conservation biology. Future studies should develop standardised classification systems for the metadata that are used to filter and weight the evidence. Future studies should also develop standardised software packages, so that researchers can efficiently publish dynamic versions of their meta-analyses and keep them up-to-date as living systematic reviews. Metadataset is a proof-of-concept for this type of software, and it is open source. Future studies should improve the user experience, scale the software architecture, agree on standards for data and metadata storage and processing, and develop protocols for responsible evidence use.
Additional file 1 of The effect of interventions anticipated to improve plantar intrinsic foot muscle strength on fall-related dynamic function in adults: a systematic review
Creators: name: Willemse, Lydia
name: Wouters, Eveline J. M.
name: Bronts, Henk M.
name: Pisters, Martijn F.
name: Vanwanseele, Benedicte
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology

description: Additional file 1. Search strategies for each database.
Geometrisation of electromagnetic interaction
Creators: name: Olkhov, O. A.
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: A new concept for the geometrisation of electromagnetic interaction is proposed. Instead of the concept "extended field--point sources", interacting Maxwell's and Dirac's fields are considered as a unified closed noneuclidean and nonriemannean space--time 4-manifold. This manifold can be considered as geometrical realisation of the "dressed electron" idea. Within this approach, the Dirac equation proves to be a relation that accounts for topological and metric characteristics of this manifold. Dirac's spinors serve as basis vectors of its fundamental group representation, while the electromagnetic field components prove to be components of a curvature tensor of the manifold covering space. Energy, momentum components, mass, charge, spin and particle--antiparticle states appear to be geometrical characteristics of the above manifold.
description: 10 pages, Latex
Ranatra lanei De Carlo 1946
Creators: name: Moreira, Felipe Ferraz Figueiredo
name: Barbosa, Julianna Freires
name: Ribeiro, José Ricardo Inacio
name: Alecrim, Viviani Pereira
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Nepidae
Ranatra
Ranatra lanei

description: Ranatra lanei De Carlo, 1946
Geographical distribution: Brazil.
 Distribution in Brazil: Southeast Region (MG, RJ) (De Carlo 1946, 1964; Nieser & Melo 1997; Souza et al. 2006; Ribeiro et al. 2010).
description: Published as part of Moreira, Felipe Ferraz Figueiredo, Barbosa, Julianna Freires, Ribeiro, José Ricardo Inacio & Alecrim, Viviani Pereira, 2011, Checklist and distribution of semiaquatic and aquatic Heteroptera (Gerromorpha and Nepomorpha) occurring in Brazil 2958, pp. 1-74 in Zootaxa 2958 (1) on page 51, DOI: 10.11646/zootaxa.2958.1.1, http://zenodo.org/record/5281851
Additional file 2 of The effect of interventions anticipated to improve plantar intrinsic foot muscle strength on fall-related dynamic function in adults: a systematic review
Creators: name: Willemse, Lydia
name: Wouters, Eveline J. M.
name: Bronts, Henk M.
name: Pisters, Martijn F.
name: Vanwanseele, Benedicte
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: Ecology
subject: Sociology
subject: FOS: Sociology

description: Additional file 2. Modified Downs & Black checklist as it was used to assess the quality of the studies included in the review.
Strongly correlated materials from a numerical renormalization group perspective: How the Fermi-liquid state of Sr$_2$RuO$_4$ emerges
Creators: name: Kugler, Fabian B.
name: Zingl, Manuel
name: Strand, Hugo U. R.
name: Lee, Seung-Sup B.
name: von Delft, Jan
name: Georges, Antoine
Publisher: name: arXiv
Year: 2019
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: The crossover from fluctuating atomic constituents to a collective state as one lowers temperature or energy is at the heart of the dynamical mean-field theory description of the solid state. We demonstrate that the numerical renormalization group is a viable tool to monitor this crossover in a real-materials setting. The renormalization group flow from high to arbitrarily small energy scales clearly reveals the emergence of the Fermi-liquid state of Sr$_2$RuO$_4$. We find a two-stage screening process, where orbital fluctuations are screened at much higher energies than spin fluctuations, and Fermi-liquid behavior, concomitant with spin coherence, below a temperature of 25 K. By computing real-frequency correlation functions, we directly observe this spin--orbital scale separation and show that the van Hove singularity drives strong orbital differentiation. We extract quasiparticle interaction parameters from the low-energy spectrum and find an effective attraction in the spin-triplet sector.
Fast and specific detection of micro and nano plastic by flowthrough plasmonic sensing - Initial DMP
Creators: name: Bibi, Aisha
Publisher: name: Zenodo
Year: 2021
Subjects: Photonics, Plasmonics, Optical Sensing

description: This is the intial Data Management Plan for the project 'Fast and specific detection of micro and nano plastic by flowthrough plasmonic sensing' falling under the umbrella of MONPLAS project funded by EC under H2020.
Measurement of high-Q2 charged current cross sections in e-p deep inelastic scattering at HERA
Creators: name: ZEUS Collaboration
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: Cross sections for e-p charged current deep inelastic scattering have been measured at a centre-of-mass energy of 318 GeV with an integrated luminosity of 16.4 pb-1 using the ZEUS detector at HERA. Differential cross-sections dσ/dQ2, dσ/dx and dσ/dy are presented for Q2>200 GeV2. In addition, d2σ/dxdQ2 was measured in the kinematic range 280 GeV2 < Q2 < 30000 GeV2 and 0.015 < x < 0.42. The predictions of the Standard Model agree well with the measured cross sections. The mass of the W boson, determined from a fit to dσ/dQ2, is MW=80.3 \pm 2.1 (stat.) \pm 1.2 (syst.) \pm 1.0 (PDF) GeV.
description: 33 pages, 5 figures (eps). Published in Physics Letters B. Corrected missing \sqrt symbol and one missing reference
Additional file 1 of Unveiling the psychosocial impact of Elexacaftor/Tezacaftor/Ivacaftor therapy in Cystic Fibrosis patients
Creators: name: García, Marta Solís
name: Peláez, Adrián
name: Punter, Rosa Mar Gómez
name: López, María Criado
name: Carbajal, Claudia Madrid
name: Ancochea, Julio
name: Bachiller, Jose María Eiros
name: Hernández, Ana Sofía Martín
name: Rodrigo-García, María
name: Clemente, Marta García
name: Moreno, Rosa Mª Girón
Publisher: name: figshare
Year: 2025
Subjects: Medicine
Cell Biology
Biological Sciences not elsewhere classified
Cancer
Science Policy
Mental Health
Hematology

description: Supplementary Material 1.
Ranatra lenti De Carlo 1950
Creators: name: Moreira, Felipe Ferraz Figueiredo
name: Barbosa, Julianna Freires
name: Ribeiro, José Ricardo Inacio
name: Alecrim, Viviani Pereira
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Nepidae
Ranatra
Ranatra lenti

description: Ranatra lenti De Carlo, 1950
Geographical distribution: Brazil.
 Distribution in Brazil: Southeast Region (MG, ES, RJ) (De Carlo 1964; Nieser & Melo 1997; Melo & Nieser 2004; Ribeiro et al. 2010).
description: Published as part of Moreira, Felipe Ferraz Figueiredo, Barbosa, Julianna Freires, Ribeiro, José Ricardo Inacio & Alecrim, Viviani Pereira, 2011, Checklist and distribution of semiaquatic and aquatic Heteroptera (Gerromorpha and Nepomorpha) occurring in Brazil 2958, pp. 1-74 in Zootaxa 2958 (1) on page 51, DOI: 10.11646/zootaxa.2958.1.1, http://zenodo.org/record/5281851
MOESM3 of The impact of patient-reported outcome (PRO) data from clinical trials: a systematic review and critical analysis
Creators: name: Rivera, Samantha
name: Kyte, Derek
name: Olalekan Aiyegbusi
name: Slade, Anita
name: McMullan, Christel
name: Calvert, Melanie
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Science Policy

description: Additional file 3. REF 2014 Impact case studies PRISMA flow diagram
Single-cell sequencing of genomic DNA resolves sub-clonal heterogeneity in a melanoma cell line
Creators: name: Velazquez-Villarreal, Enrique I.
name: Maheshwari, Shamoni
name: Sorenson, Jon
name: Fiddes, Ian T.
name: Kumar, Vijay
name: Yin, Yifeng
name: Webb, Michelle G.
name: Catalanotti, Claudia
name: Grigorova, Mira
name: Edwards, Paul A.
name: Carpten, John D.
name: Craig, David W.
Publisher: name: Apollo - University of Cambridge Repository
Year: 2020
Subjects: Article
/631/67/2329
/631/208/68
/631/208/69
/631/67/68
/631/67/69
/45
/45/23
article

description: Abstract: We performed shallow single-cell sequencing of genomic DNA across 1475 cells from a cell-line, COLO829, to resolve overall complexity and clonality. This melanoma tumor-line has been previously characterized by multiple technologies and is a benchmark for evaluating somatic alterations. In some of these studies, COLO829 has shown conflicting and/or indeterminate copy number and, thus, single-cell sequencing provides a tool for gaining insight. Following shallow single-cell sequencing, we first identified at least four major sub-clones by discriminant analysis of principal components of single-cell copy number data. Based on clustering, break-point and loss of heterozygosity analysis of aggregated data from sub-clones, we identified distinct hallmark events that were validated within bulk sequencing and spectral karyotyping. In summary, COLO829 exhibits a classical Dutrillaux’s monosomic/trisomic pattern of karyotype evolution with endoreduplication, where consistent sub-clones emerge from the loss/gain of abnormal chromosomes. Overall, our results demonstrate how shallow copy number profiling can uncover hidden biological insights.
Additional file 1 of Right-lateral offset associated with the most recent earthquake on the Ikeda fault of the Median Tectonic Line, southwest Japan, revealed by ground-penetrating radar profiling
Creators: name: Patria, Adi
name: Kimura, Haruo
name: Kitade, Yoshihiro
name: Tsutsumi, Hiroyuki
Publisher: name: figshare
Year: 2022
Subjects: subject: Geophysics
subject: FOS: Earth and related environmental sciences

description: Additional file 1. The 3D model of the paleochannel A.
A Regional Multi-Agent Model as a Tool for Modelling Small Structured Agricultural Land-Use
Creators: name: Kantelhardt, Jochen
name: Kapfer, Martin
name: Roeder, Norbert
name: Kantelhardt, Jochen
name: Kapfer, Martin
name: Roeder, Norbert
Publisher: name: Unknown
Year: 2005
Subjects: subject: Agricultural and Food Policy
subject: Land Economics/Use
subject: Research Methods/ Statistical Methods
subject: linear programming
subject: land market simulation
subject: agent based modelling
subject: farmers attitude
subject: policy analysis
subject: social impacts

description: Often, land-use models do not take into account social aspects. But in particular farmers’ attitudes seem to be one of the driving forces for agricultural land-use and therefore for economic, ecological and social developments in rural areas. The presented land-use model is an attempt to incorporate data which are in a strict sense not economic. The farm must be viewed as the basic entity for many questions because farmland, farm equipment, and farmer’s attitudes differ from farm to farm. Furthermore interactions between farms like knowledge transfer or market behaviour must kept in mind. Therefore the model presented conceives the farms as independent agents aiming at maximum individual utility which is dependent on personal attitudes. The utility is calculated by a linear programming algorithm which takes into account natural, economic and personal restrictions. Interactions between farms take place on the land market, which is modelled as an equilibrium market. Land distribution as well as corresponding land rents are calculated with the help of a modified Sequential Simplex Algorithm (SSO). The calculations yield data on two levels: On farm level economic and social data like income and workload are calculated. Regional results, as aggregation of the regarded farms, show regional opportunities and threats.
Gas in Groups and Clusters of Galaxies
Creators: name: Schindler, Sabine
Publisher: name: arXiv
Year: 2002
Subjects: subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: Groups and clusters contain a large fraction of hot gas which emits X-ray radiation. This gas yields information on the dynamical state and on the total mass of these systems. X-ray spectra show that heavy elements are present in the gas. As these metals must have been produced in the cluster/group galaxies and later transported into the gas, the metallicity is a good tracer for the transport processes. Several possible processes, that transport gas from the small potential wells of the galaxies into the clusters and groups, are discussed.
description: Invited review given at the JENAM 2002 in Porto, Workshop ISM, eds. M.A. de Avillez & D. Breitschwerdt, Kluwer, 10 pages, 7 figures
Ranatra machrisi Nieser & Burmeister 1998
Creators: name: Moreira, Felipe Ferraz Figueiredo
name: Barbosa, Julianna Freires
name: Ribeiro, José Ricardo Inacio
name: Alecrim, Viviani Pereira
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Nepidae
Ranatra
Ranatra machrisi

description: Ranatra machrisi Nieser & Burmeister, 1998
Geographical distribution: Brazil.
Distribution in Brazil: Central-West Region (GO) (Nieser & Burmeister 1998).
description: Published as part of Moreira, Felipe Ferraz Figueiredo, Barbosa, Julianna Freires, Ribeiro, José Ricardo Inacio & Alecrim, Viviani Pereira, 2011, Checklist and distribution of semiaquatic and aquatic Heteroptera (Gerromorpha and Nepomorpha) occurring in Brazil 2958, pp. 1-74 in Zootaxa 2958 (1) on page 51, DOI: 10.11646/zootaxa.2958.1.1, http://zenodo.org/record/5281851
Additional file 1 of Primary care disease management for venous leg ulceration—study protocol for the Ulcus Cruris Care [UCC] randomized controlled trial (DRKS00026126)
Creators: name: Senft, Jonas D.
name: Fleischhauer, Thomas
name: Frasch, Jona
name: van Rees, Wiebke
name: Feißt, Manuel
name: Schwill, Simon
name: Fink, Christine
name: Poß-Doering, Regina
name: Wensing, Michel
name: Müller-Bühl, Uwe
name: Szecsenyi, Joachim
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1. SPIRIT checklist of the UCC trial.docx
Gaudin Models and Multipoint Conformal Blocks: General Theory
Creators: name: Buric, Ilija
name: Lacroix, Sylvain
name: Mann, Jeremy
name: Quintavalle, Lorenzo
name: Schomerus, Volker
Publisher: name: Deutsches Elektronen-Synchrotron, DESY, Hamburg
Year: 2021
Subjects: model, integrability
operator, differential
field theory, conformal
conformal block
correlation function
Gaudin model
operator product expansion
higher-dimensional

description: The construction of conformal blocks for the analysis of multipoint correlation functions with $N > 4$ local field insertions is an important open problem in higher dimensional conformal field theory. This is the first in a series of papers in which we address this challenge, following and extending our short announcement in [Phys. Rev. Lett. 126, 021602]. According to Dolan and Osborn, conformal blocks can be determined from the set of differential eigenvalue equations that they satisfy. We construct a complete set of commuting differential operators that characterize multipoint conformal blocks for any number $N$ of points in any dimension and for any choice of OPE channel through the relation with Gaudin integrable models we uncovered in [Phys. Rev. Lett. 126, 021602]. For 5-point conformal blocks, there exist five such operators which are worked out smoothly in the dimension $d$.
Performance improvement of refractometric sensors through hybrid plasmonic-Fano resonances
Creators: name: Elshorbagy
name: M.
name: Cuadrado
name: A.
name: Gonzalez
name: G.
name: J., Gonzalez F.
name: Alda
name: Javier
Publisher: name: arXiv
Year: 2019
Subjects: subject: Optics (physics.optics)
subject: Applied Physics (physics.app-ph)
subject: FOS: Physical sciences

description: In this paper, we present a plasmonic refractometric sensor that works under normal incidence; allowing its integration on a fiber tip. The sensor's material and geometry exploit the large scattering cross-section given by high-contrast of the index of refraction subwavelength dielectric gratings. Our design generates a hybrid plasmonic-Fano resonance due to the interference between the surface plasmon resonance and the grating response. We optimize the sensor with a merit function that combines the quality parameter of the resonance and the field enhancement at the interaction volume where the plasmon propagates. Our device shows a high sensitivity (1000 nm/RIU) and a high Figure of Merit (775 RIU$^{-1}$). Degradation in performance is negligible through a wide dynamic range up to 0.7 RIU. These quantitative parameters overperform compared to similar plasmonic sensors.