cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Single biomarker screening using opto-electronic nanopores for diagnostics
Creators: name: Cai, Shenglin
Publisher: name: Imperial College London
Year: 2019

description: The capability to selectively identify and quantify small nucleic acids or proteins in low abundance in the clinical sample has become a major driving force for the development of next-generation diagnostic strategies. To this end, nanopores have been a promising analytical tool for sensing biomolecules at the single-molecule level, directly in biofluids, without the need for sample processing. Nanopores, however, generally the lack of selectivity and accuracy to discriminate small molecules that have similar size but different structure and biological function, and this, in turn, has limited their applications in diagnostics. In this thesis, I present a novel opto-electronic strategy combining the electrical sensing modality of a nanopore with fluorescence-based detection to address these challenges. By engineering a molecular beacon (MB) attached to a DNA carrier, I was able to show that target molecules could be selectively and accurately identified through reading a synchronised opto-electrical signal originating from the carrier and bound target that was translocated through the nanopore. By quantifying the fraction of synchronisation, one can predict the target concentration as well as determine the target binding affinity without directly labelling of the target itself. The method is based on aptamer binding and is applicable for a wide panel of targets, including proteins with known aptamer recognition sequences or DNA and RNA with known sequences. It was also possible to discriminate the latter with single-nucleotide resolution. In addition, it was possible to detect more than one target simultaneously and increase the throughput by using DNA carriers of a specific length for each target. In this thesis, it is shown that multiple miRNAs (miR-141, miR-375) that have been implicated in prostate cancer can be quantified simultaneously with only one test, performed directly in the clinical sample. I demonstrate the ability of this strategy to distinguish single nucleotide polymorphism (SNP) within the same miRNA family. Notably, this strategy can simultaneously profile the small aberrations in multiple miRNA expression in patients with different stages of prostate cancer. Overall, the present findings in this thesis have pushed the nanopore sensing a step closer to the practical biomedical diagnosis and provide insights for developing next-generation clinical sample assays.
On the solutions of a second-order difference equations in terms of generalized Padovan sequences
Creators: name: Halim, Yacine
name: Rabago, Julius Fergy T.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Dynamical Systems (math.DS)
subject: FOS: Mathematics

description: This paper deals with the solution, stability character and asymptotic behavior of the rational difference equation \begin{equation*} x_{n+1}=\frac{αx_{n-1}+β}{ γx_{n}x_{n-1}},\qquad n \in \mathbb{N}_{0}, \end{equation*} where $\mathbb{N}_{0}=\mathbb{N}\cup \left\{0\right\}$, $α,β,γ\in\mathbb{R}^{+}$, and the initial conditions $x_{-1}$ and $x_{0}$ are non zero real numbers such that their solutions are associated to generalized Padovan numbers. Also, we investigate the two-dimensional case of the this equation given by \begin{equation*} x_{n+1} = \frac{αx_{n-1} + β}{γy_n x_{n-1}}, \qquad y_{n+1} = \frac{αy_{n-1} +β}{γx_n y_{n-1}} ,\qquad n\in \mathbb{N}_0, \end{equation*} and this generalizes the results presented in \cite{yazlik}
description: 17 pages, 2 figures
On the magnetic field of the ultraluminous X-ray pulsar M82 X-2
Creators: name: Xu, Kun
name: Li, Xiang-Dong
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: The discovery of the ultraluminous X-ray pulsar M82 X-2 has stimulated lively discussion on the nature of the accreting neutron star. In most of the previous studies the magnetic field of the neutron star was derived from the observed spin-up/down rates based on the standard thin, magnetized accretion disk model. However, under super-Eddington accretion the inner part of the accretion disk becomes geometrically thick. In this work we consider both radiation feedback from the neutron star and the sub-Keplerian rotation in a thick disk, and calculate the magnetic moment - mass accretion rate relations for the measured rates of spin change. We find that the derived neutron star's dipole magnetic field depends the maximum accretion rate adopted, but is likely $\lesssim 10^{13}$ G. The predicted accretion rate change can be used to test the proposed models by comparison with observations.
description: ApJ, 838, 98 (2017)
title: Pot (Inv. 992.16.182.2) – Oppidum de Bibracte
Creators: name: Bibracte
Publisher: name: Conservatoire National des Données 3D (CND3D)
Year: 2024
Subjects: subject: pot

description: Forme  couleur et décor sont autant d’indices qui permettent à l’archéologue de préciser l’usage d’une poterie ou sa date de fabrication. Les jarres de grande taille servent au stockage. Les récipients plus petits  à la paroi épaisse et noircie  sont des pots à cuire. La vaisselle de table présente une plus grande diversité. Les pots à boisson aux formes élancées et aux surfaces sombres de style gaulois laissent progressivement la place à des cruches à pâte plus claire pourvues d’une ou deux anses. Les plats et assiettes dénotent très tôt l’influence romaine. L’évolution de leur forme suit de près celle de la céramique à vernis noir (“campanienne”) et à vernis rouge (“sigillée”) dont elle s’inspire.
The mechanobiology of the inner wall endothelium of Schlemm's Canal
Creators: name: Spenlehauer, Alice
Publisher: name: Imperial College London
Year: 2019

description: Glaucoma is the leading cause of irreversible blindness worldwide. The main risk factor for glaucoma is elevated intraocular pressure caused by increased resistance to aqueous humour (AH) flow in the region near the inner wall endothelium of SC. In the healthy eye, AH flow across the SC endothelium generates a basal-to-apical transendothelial pressure drop, which tends to push the cells off their basement membrane and inflates dome-shaped structures known as giant vacuoles (GVs). GV formation leads to substantial cell thinning associated with formation of transendothelial pores that provide a flow pathway across the SC endothelium. Our overarching hypothesis is that the coupled interaction between transendothelial basal-to-apical pressure drop, and GV and pore formation, is centrally involved the regulation of flow resistance and IOP. We examined this hypothesis across four studies carried out using an in vitro model of SC endothelium that mimicked the in vivo basal-to-apical transendothelial pressure drop. A first study demonstrated that GV-like structures (GVLs) form in perfused SC endothelial (SCE) cells and that they can retract against a load likely through an actomyosin-dependent process. A second study demonstrated that a proportion of GVLs are surrounded by an F-actin band that presumably contracts during GVL retraction. Together these findings suggest that SCE cells can modulate GV dynamics, which may be important for outflow resistance regulation. The third study showed that the hydraulic resistivity of SCE cell layers exhibits both pressure and time-dependent characteristics that likely reflect changes in the cell layer morphology. The study also highlighted that the existence of non-physiological intercellular gaps limits the interpretation of resistivity measurements. The final study established that culturing SCE cells under a long-term transendothelial pressure drop may overcome this limitation as it leads SCE cell layers to better reproduce key cytoskeletal, cellular and multicellular morphological characteristics of the SC endothelial barrier.
A mirror duality for families of $K3$ surfaces associated to bimodular singularities
Creators: name: Mase, Makiko
Publisher: name: arXiv
Year: 2017
Subjects: subject: Algebraic Geometry (math.AG)
subject: FOS: Mathematics
subject: 14J28 14M25 14C22

description: Ebeling and Ploog \cite{EbelingPloog} studied a duality of bimodular singularities which is part of the Berglund--H$\ddot{\textnormal{u}}$bsch mirror symmetry. Mase and Ueda \cite{MU} showed that this duality leads to a polytope mirror symmetry of families of $K3$ surfaces. We discuss in this article how this symmetry extends to a symmetry between lattices.
description: 16 pages, 4 tables
title: ADCO, Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome VI, Cart. 190 (11 H 75), 316 folios, f. 0084v
Creators: name: de la Côte d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CG21/F.PETOT/2012
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: cartulaire
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris
subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge

description: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome VI, Archives départementales de la Côte-d'Or, Cart. 190 (11 H 75), 316 folios, f. 0084v, Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Cartulaire général de Cîteaux, dit de Jean de Cirey, (XVe siècle), tome VI, Archives départementales de la Côte-d'Or, Cart. 190 (11 H 75), 316 folios, f. 0084v, in Projet CBMA - Corpus Burgundiae Medii Aevi [Ressource en ligne], https:// manuscrits.cbma-project.eu/
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
Additional file 1 of Patient satisfaction and its health provider-related determinants in primary health facilities in rural China
Creators: name: Gao, Qiufeng
name: Liu, Meili
name: Peng, Lanxi
name: Zhang, Yang
name: Shi, Yaojiang
name: Teuwen, Dirk E.
name: Yi, Hongmei
Publisher: name: figshare
Year: 2022
Subjects: Medicine
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
Science Policy

description: Additional file 1. Characteristics of facilities and physicians in sample township health centers and village clinics
MELHORIA DE QUALIDADE NO PARADIGMA DA CIÊNCIA DA IMPLEMENTAÇÃO EM PROGRAMAS PROFISSIONAIS: REVISÃO DE ESCOPOed
Creators: name: de Aquino Lemos Corrêa, Bruna
name: Santana, Rosimere
name: Bandeira, Tatiany
name: de Carvalho, Ana
name: Carmo, Thalita Gomes Do
name: da Silva Rocha, Greiciane
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Medicine and Health Sciences
subject: Education
subject: Other Nursing
subject: Nursing
subject: FOS: Health sciences

description: Trata-se de uma revisão de escopo realizada de outubro á dezembro seguindo os pressupostos estabelecidos pelo Joanna Briggs Institute (2020) e do protocolo PRISMA-ScR. Com o objetivo de mapear a produção do conhecimento referente a melhoria de qualidade no paradigma da ciência da implementação em programas profissionais. Almeja-se identificar publicações a partir da estratégia de busca adotada, que respondam ao objetivo do estudo, que estejam voltados a melhoria de qualidade no ensino, de forma que seja possível obter conhecimento amplo sobre a temática e sua difusão nacionalmente e internacionalmente.
Uncovering the molecular mechanism underlying the requirement of cyclic di-AMP for the growth of Staphylococcus aureus
Creators: name: Zeden, Merve Suzan
Publisher: name: Imperial College London
Year: 2019

description: Cyclic di-adenosine monophosphate (c-di-AMP) is a signalling molecule that is important for the survival of Firmicutes. Previous work has shown that the gene(s) coding for the di-adenylate cyclase enzyme(s) could not be mutated when bacteria are grown in standard rich medium. My previous work has revealed that also in Staphylococcus aureus it is not possible to delete the dacA gene coding for the sole c-di-AMP cyclase in rich medium. However, it was possible to generate a dacA mutant strain in chemically defined medium. Using the severe growth defect of this mutant in rich medium, suppressor strains with improved growth under these conditions were obtained. Inactivating mutations that bypass the essentiality of dacA were identified in the alsT and opuD genes using a whole genome sequencing approach. As part of this work, I could show that these genes code for the main glutamine (AlsT) and glycine betaine (OpuD) transporters in S. aureus. Thus, these results revealed that S. aureus can survive without c-di-AMP when glutamine or glycine betaine uptake is prevented. Using bacterial cell size as a proxy for their osmotic balance, it was further shown that inactivation of OpuD helps bacteria to re-establish their osmotic balance, while inactivation of AlsT does not and bacteria remain enlarged. Glutamine and glutamate levels serve as a key indicator of nitrogen availability in bacterial cells. Therefore, with this work, not only a further connection between the c-di-AMP signalling network and osmotic regulation in S. aureus was established but also to central nitrogen metabolism. Other suppressor mutations were in hepS, hemB, ctaA and qoxB, which code for respiration related proteins. Expanding on this, I could show that dacA is dispensable in anaerobic growth conditions. This finding provides a novel link between the c-di-AMP signalling network and its requirement for aerobic but not anaerobic growth in S. aureus.
title: ISUF vs. HERSUS Glossary: Correlating Urban Morphology  to Heritage Awareness and Sustainability of Built Environment
Creators: name: Djokić, Vladan
name: Milojević, Milica P.
name: Milovanović, Aleksandra
name: Djordjević, Aleksandra
name: Pešić, Mladen
Publisher: name: Conference Proceedings  XXIX International Seminar on Urban Form ISUF 2022 Urban Redevelopment and Revitalisation A Multidisciplinary Perspective/ Lodz University of Technology Press
Year: 2023
Subjects: Heritage, Urban morphology, Sustainability, Glossaries

description: This paper builds on the intellectual outputs of the project titled Enhancing of Heritage Awareness and Sustainability of Built Environment in Architectural and Urban Design Higher Education (HERSUS), coordinated by the University of Belgrade - Faculty of Architecture as a leading higher education institution, with partner institutions from Venice, Cyprus, Thessaloniki and Seville. The focus of the paper is in mapping the index of concepts between ISUF Glossary and the glossary produced within HERSUS project, that will enable the comparison of the discourse in Heritage and Sustainability with the discourse of Morphological Research. The purpose of this paper is to see through the comparison of the terms from both glossaries and hence contribute to the discussion of terminology, specifically regarding RE-terms (reuse, resilience, reconstruction), that were initially set as guiding tracks of the HERSUS project. The conclusions related to the interlink between ISUF and HERSUS glossaries will be perceived as important input for tag matrix upgrade, future use of HERSUS Sharing platform (open repository of ideas), that could strengthen the role of morphological approaches in research and in architectural and urban design projects related to heritage awareness and sustainability of built environment
Additional file 7: Table S1. of Ectopic expression of the apple nucleus-encoded thylakoid protein MdY3IP1 triggers early-flowering and enhanced salt-tolerance in Arabidopsis thaliana
Creators: name: Yu, Jian-Qiang
name: Wang, Jia-Hui
name: Cui-Hui Sun
name: Quan-Yan Zhang
name: Hu, Da-Gang
name: Hao, Yu-Jin
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Plant Biology
subject: 60506 Virology

description: The primers used for RT-PCR and qRT-PCR in this study. (PDF 18Â kb)
Microstructural characterisation and mechanical testing of zirconium alloys and hydrides
Creators: name: Wang, Siyang
Publisher: name: Imperial College London
Year: 2019

description: Microstructure and formation mechanisms of δ-hydrides in rolled and recrystallised fine grain (grain size ~11 μm) and ‘blocky alpha’ large grain (grain size >200 μm) Zircaloy-4 have been studied using electron backscatter diffraction (EBSD). A unique {0001}α ||{111}δ;<112 ̅0>α ||<110>δ matrix-hydride orientation relationship (OR) was found which supports the hydride formation mechanism through partial dislocation gliding on alternate matrix basal planes. Hydride stringers in the fine grain material were found to form through sympathetic hydride growth across grain boundaries. The macroscopic alignment of hydride stringers perpendicular to the plate normal direction (ND) is due mainly to the matrix material texture while relates weakly to the grain boundary characters. Micropillar compression tests reveal that the properties of basal slip in Zircaloy-4 vary strongly with temperature between 298 K and 623 K and the change in critical resolved shear stress (CRSS) with temperature follows a thermally activated constitutive law. At 623 K, the addition of hydrogen solutes has led to more homogeneous basal slip and negligible strain hardening. The interactions between crystal slip and hydrides in Zircaloy-4 have been studied using micropillar compression tests of single crystal specimens (where hydrides are intragranular) and macroscale tensile tests of polycrystal specimens (where hydrides are intergranular). Results suggest that local shear along some of the hydride-matrix interfaces is favoured over slip in the matrix nearby, causing localised deformation. Slip bands in the matrix, when reaching the hydride-matrix interfaces (nearly) perpendicularly, can either get arrested at the interfaces or result in shear within the hydride. Using high angular resolution EBSD (HR-EBSD), these complicated slip-hydride interactions have been observed to give rise to significant geometrically necessary dislocation (GND) pile-up along the hydride-matrix interface, indicating the risks of local damage accumulation and the tendency of hydrogen diffusion towards the dislocated area at high temperature triggering delayed hydride cracking (DHC).
Optimal Scheduling of Downlink Communication for a Multi-Agent System with a Central Observation Post
Creators: name: Zanon, Mario
name: Charalambous, Themistoklis
name: Wymeersch, Henk
name: Falcone, Paolo
Publisher: name: arXiv
Year: 2017
Subjects: subject: Optimization and Control (math.OC)
subject: FOS: Mathematics

description: In this paper, we consider a set of agents, which may receive an observation of their state by a central observa- tion post via a shared wireless network. The aim of this work is to design a scheduling mechanism for the central observation post to decide how to allocate the available communication resources. The problem is tackled in two phases: (i) first, the local controllers are designed so as to stabilise the subsystems for the case of perfect communication; (ii) second, the com- munication schedule is decided with the aim of maximising the stability of the subsystems. To this end, we formulate an optimisation problem which explicitly minimises the Lyapunov function increase due to communication limitations. We show how the proposed optimisation can be expressed in terms of Value of Information (VoI), we prove Lyapunov stability in probability and we test our approach in simulations.
Essays in financial economics
Creators: name: Iqbal, Mobeen
Publisher: name: Imperial College London
Year: 2019

description: Chapter 1 explores the recent failure of covered interest parity (CIP) in tranquil markets. By focussing on the term structure of CIP deviations, the chapter shows that imbalances in the demand for and supply of FX hedges exert first order effects on the level of CIP deviations. Fluctuations in FX hedging demand move forward exchange rates out of line with CIP because financial institutions charge premia for provisioning for risks associated with FX derivative exposure. The chapter highlights a fundamental change in the relationship between prices and quantities in the FX derivatives market. Chapter 2 studies the impact of agency on asset prices. The chapter presents a model in which benchmarked money managers tilt their portfolios to low volatility stocks in periods of high market volatility. The tilt by a large segment of the market means that low volatility stocks appear expensive and vice versa for high volatility stocks. The chapter shows that benchmarking constraints result in a steeper security market line (SML) in periods of high market volatility than implied by the Capital Asset Pricing Model (CAPM), that mutual (hedge) fund betas fall (rise) with rising market volatility, and that betas become more dispersed in stressed markets. Chapter 3 explores whether one can use holdings data from the Securities and Exchange Commission (SEC)'s 13F filings to systematically extract hedge fund alpha. Using proprietary data on hedge fund holdings to identify a subset of managers known as 'Fundamental Equity Hedge Funds' (FEHF) that tend to have a longer-term view on stock picks, the chapter shows that portfolio construction in this context must take the 'how' and the 'who' into consideration. The chapter proposes a long-only trading strategy based on conviction and consensus of FEHFs that delivers a Sharpe ratio of 0.86 and a significant six-factor alpha of 0.37% per month.
Optimisation of the SHiP Beam Dump Facility with generative surrogate models
Creators: name: Shirobokov, Sergey
Publisher: name: Imperial College London
Year: 2021

description: The SHiP experiment is a proposed fixed target experiment at the CERN SPS to search for new particles. To operate optimally, the experiment should feature a zero background environment. The residual muons flying from the target are one of the largest sources of the background. To remove them from the detector acceptance, a dedicated muon shield magnet is introduced in the experiment. The shield should be optimised to deliver the best physics performance at the lowest cost. The optimisation procedure is very computationally costly and, thus, requires ded- icated methods. This thesis comprises of a detailed description of a new machine learning method for the optimisation, comparisons to existing techniques, and the application of the method to optimising the muon shield magnet. In addition, the set of technological and simulation problems affecting the optimisation is discussed in details. Finally, the set of requirements for the muon shield prototype design and verification is presented.
Additional file 5: Figure S5. of Ectopic expression of the apple nucleus-encoded thylakoid protein MdY3IP1 triggers early-flowering and enhanced salt-tolerance in Arabidopsis thaliana
Creators: name: Yu, Jian-Qiang
name: Wang, Jia-Hui
name: Cui-Hui Sun
name: Quan-Yan Zhang
name: Hu, Da-Gang
name: Hao, Yu-Jin
Publisher: name: figshare
Year: 2018
Subjects: subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: Developmental Biology
subject: Inorganic Chemistry
subject: FOS: Chemical sciences
subject: Plant Biology
subject: 60506 Virology

description: The deduced functional domains of MdY3IP1 protein. (DOC 44Â kb)
In-situ tuning of whispering gallery modes of levitated silica microspheres
Creators: name: Minowa, Yosuke
name: Toyota, Yusuke
name: Ashida, Masaaki
Publisher: name: arXiv
Year: 2017
Subjects: subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: We demonstrated the tuning of whispering gallery modes (WGMs) of a silica microsphere during optical levitation through the annealing process. We determined the annealing temperature from the power balance between the CO2 laser light heating and several cooling processes. Cooling caused by heat conduction through the surrounding air molecules is the dominant process. We achieved a blue shift of the WGMs as large as 1 \%, which was observed in the white-light scattering spectrum from the levitated microsphere.
Electronic bandstructure and van der Waals coupling of ReSe2 revealed by high-resolution angle-resolved photoemission spectroscopy
Creators: name: Hart, Lewis S
name: Webb, James L
name: Dale, Sara
name: Bending, Simon J.
name: Mucha-Kruczynski, Marcin
name: Wolverson, Daniel
name: Chen, Chaoyu
name: Avila, José
name: Asensio, Maria C.
Publisher: name: arXiv
Year: 2017
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: ReSe2 and ReS2 are unusual compounds amongst the layered transition metal dichalcogenides as a result of their low symmetry, with a characteristic in-plane anisotropy due to in-plane rhenium chains. They preserve inversion symmetry independent of the number of layers and, in contrast to more well-known transition metal dichalcogenides, bulk and few-monolayer Re-TMD compounds have been proposed to behave as electronically and vibrational decoupled layers. Here, we probe for the first time the electronic band structure of bulk ReSe2 by direct nanoscale angle-resolved photoemission spectroscopy. We find a highly anisotropic in- and out-of-plane electronic structure, with the valence band maxima located away from any particular high-symmetry direction. The effective mass doubles its value perpendicular to the Re chains and the interlayer van der Waals coupling generates significant electronic dispersion normal to the layers. Our density functional theory calculations, including spin-orbit effects, are in excellent agreement with these experimental findings.
Photoinduced charge-order melting dynamics in a one-dimensional interacting Holstein model
Creators: name: Hashimoto, Hiroshi
name: Ishihara, Sumio
Publisher: name: arXiv
Year: 2017
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Transient quantum dynamics in an interacting fermion-phonon system are investigated. In particular, a charge order (CO) melting after a short optical-pulse irradiation and roles of the quantum phonons on the transient dynamics are focused on. A spinless-fermion model in a one-dimensional chain coupled with local phonons is analyzed numerically. The infinite time-evolving block decimation algorithm is adopted as a reliable numerical method for one-dimensional quantum many-body systems. Numerical results for the photoinduced CO melting dynamics without phonons are well interpreted by the soliton picture for the CO domains. This interpretation is confirmed by the numerical simulation for an artificial local excitation and the classical soliton model. In the case of the large phonon frequency corresponding to the antiadiabatic condition, the CO melting is induced by propagations of the polaronic solitons with the renormalized soliton velocity. On the other hand, in the case of the small phonon frequency corresponding to the adiabatic condition, the first stage of the CO melting dynamics occurs due to the energy transfer from the fermionic to phononic systems, and the second stage is brought about by the soliton motions around the bottom of the soliton band. Present analyses provide a standard reference for the photoinduced CO melting dynamics in low-dimensional many-body quantum systems.
description: 11pages, 13 figures
Anexo 1. Encuesta_de_datos_consumo_de_calcio_CC-IOF.pdf
Creators: name: Montiel, Diana
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: 111706 Epidemiology
subject: FOS: Health sciences

description: sociodemographic, lifestyle and calcium intake data questionnaire for study conducted in Costa Rica and Panama
Application of SNiPER framework to BESIII physics analysis
Creators: name: Xia, Xin
name: Li, Teng
name: Huang, Xing-Tao
name: Zhang, Xue-Yao
Publisher: name: arXiv
Year: 2017
Subjects: subject: High Energy Physics - Experiment (hep-ex)
subject: Data Analysis, Statistics and Probability (physics.data-an)
subject: FOS: Physical sciences

description: A fast physics analysis framework has been developed based on SNiPER to process the increasingly large data sample collected by BESIII. In this framework, a reconstructed event data model with SmartRef is designed to improve the speed of Input/Output operations, and necessary physics analysis tools are migrated from BOSS to SNiPER. A real physics analysis $e^{+}e^{-} \rightarrow π^{+}π^{-}J/ψ$ is used to test the new framework, and achieves a factor of 10.3 improvement in Input/Output speed compared to BOSS. Further tests show that the improvement is mainly attributed to the new reconstructed event data model and the lazy-loading functionality provided by SmartRef.
Anomalous Anisotropic Exciton Temperature Dependence in Rutile TiO2
Creators: name: Baldini, Edoardo
name: Dominguez, Adriel
name: Chiodo, Letizia
name: Sheveleva, Evgeniia
name: Yazdi-Rizi, Meghdad
name: Bernhard, Christian
name: Rubio, Angel
name: Chergui, Majed
Publisher: name: arXiv
Year: 2017
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Elucidating the details of the electron-phonon coupling in semiconductors and insulators is a topic of pivotal interest, as it governs the transport mechanisms and is responsible for various phenomena such as spectral-weight transfers to phonon sidebands and self-trapping. Here, we investigate the influence of the electron-phonon interaction on the excitonic peaks of rutile TiO$_2$, revealing a strong anisotropic polarization dependence with increasing temperature, namely an anomalous blueshift for light polarized along the a-axis and a conventional redshift for light polarized along the c-axis. By employing many-body perturbation theory, we identify two terms in the electron-phonon interaction Hamiltonian that contribute to the anomalous blueshift of the a-axis exciton. Our approach paves the way to a complete ab initio treatment of the electron-phonon interaction and of its influence on the optical spectra of polar materials.
MOESM3 of Single nucleotide polymorphisms in genes encoding penicillin-binding proteins in Î˛-lactamase-negative ampicillin-resistant Haemophilus influenzae in Japan
Creators: name: Misawa, Kazuhisa
name: Tarumoto, Norihito
name: Tamura, Shinsuke
name: Morichika Osa
name: Hamamoto, Takaaki
name: Yuki, Atsushi
name: Kouzaki, Yuji
name: Imai, Kazuo
name: Runtuwene Ronald
name: Yamaguchi, Toshiyuki
name: Murakami, Takashi
name: Shigefumi Maesaki
name: Suzuki, Yutaka
name: Kawana, Akihiko
name: Maeda, Takuya
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: Additional file 3. AcrB mutations and their relationship with ABPC MICs for each genotype.
Observation of stable Neel skyrmions in Co/Pd multilayers with Lorentz transmission electron microscopy
Creators: name: Pollard, Shawn D.
name: Garlow, Joseph A.
name: Yu, Jiawei
name: Wang, Zhen
name: Zhu, Yimei
name: Yang, Hyunsoo
Publisher: name: arXiv
Year: 2017
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Neel skyrmions are of high interest due to their potential applications in a variety of spintronic devices, currently accessible in ultrathin heavy metal/ferromagnetic bilayers and multilayers with a strong Dzyaloshinskii-Moriya interaction. Here we report on the direct imaging of chiral spin structures including skyrmions in an exchange coupled Co/Pd multilayer at room temperature with Lorentz transmission electron microscopy, a high resolution technique previously suggested to exhibit no Neel skyrmion contrast. Phase retrieval methods allow us to map the internal spin structure of the skyrmion core, identifying a 25 nm central region of uniform magnetization followed by a larger region characterized by rotation from in- to out-of-plane. The formation and resolution of the internal spin structure of room temperature skyrmions without a stabilizing out-of-plane field in thick magnetic multilayers opens up a new set of tools and materials to study the physics and device applications associated with chiral ordering and skyrmions.
description: 7 figures
AM$^3$: An Open-Source Tool for Time-Dependent Lepto-Hadronic Modeling of Astrophysical Sources
Creators: name: Klinger, Marc
name: Rudolph, Annika
name: Rodrigues, Xavier
name: Yuan, Chengchao
name: de Clairfontaine, Gaëtan Fichet
name: Fedynitch, Anatoli
name: Winter, Walter
name: Pohl, Martin
name: Gao, Shan
Publisher: name: Deutsches Elektronen-Synchrotron, DESY, Hamburg
Year: 2024
Subjects: subject: 520
subject: Compton scattering: inverse
subject: neutrino: spectrum
subject: particle: density
subject: photon photon: annihilation
subject: pi: production
subject: gamma ray: burst
subject: programming
subject: photon
subject: spectral
subject: AGN
subject: nonlinear
subject: feedback
subject: positron
subject: muon
subject: blazar
subject: hybrid
subject: tracks
subject: efficiency
subject: electron
subject: cascade
subject: time dependence
subject: synchrotron

description: We present the AM$^3$ (``Astrophysical Multi-Messenger Modeling'') software, which has been successfully used in the past to simulate the multi-messenger emission, including neutrinos, from active galactic nuclei, including the blazar sub-class, gamma-ray bursts, and tidal disruption events. AM$^3$ is a documented state-of-the-art open source software that efficiently solves the coupled integro-differential equations for the spectral and temporal evolution of the relevant particle densities (photons, electrons, positrons, protons, neutrons, pions, muons, and neutrinos). AM$^3$ includes all relevant non-thermal processes (synchrotron, inverse Compton scattering, photon-photon annihilation, proton-proton and proton-photon pion production, and photo-pair production). The software self-consistently calculates the full cascade of primary and secondary particles, outperforming simple test-particle approaches, and allows for non-linear feedback and predictions in the time domain. It also allows to track separately the contributions of different radiative processes to the overall photon and neutrino spectra, including the different hadronic interaction channels. With its efficient hybrid solver combining analytical and numerical techniques, AM$^3$ combines efficiency and accuracy at a user-adjustable level. We describe the technical details of the numerical framework and present examples of applications to various astrophysical environments.
Shared Urbanism as a means to creating sustainable Smart Cities in India
Creators: name: Gopal, Aparna
Publisher: name: figshare
Year: 2021
Subjects: subject: Geography
subject: Sociology
subject: FOS: Sociology
subject: 140218 Urban and Regional Economics
subject: FOS: Economics and business
subject: 120599 Urban and Regional Planning not elsewhere classified
subject: FOS: Social and economic geography
subject: 120504 Land Use and Environmental Planning
subject: 120501 Community Planning
subject: Environmental Humanities
subject: Artificial Intelligence and Image Processing
subject: FOS: Computer and information sciences
subject: 80199 Artificial Intelligence and Image Processing not elsewhere classified
subject: 80602 Computer-Human Interaction
subject: FOS: Psychology
subject: Data Format
subject: 80604 Database Management
subject: 80606 Global Information Systems
subject: 80703 Human Information Behaviour
subject: FOS: Media and communications
subject: 80612 Interorganisational Information Systems and Web Services
subject: 80306 Open Software
subject: 80707 Organisation of Information and Knowledge Resources
subject: 80709 Social and Community Informatics

description: India International Science Festival (IISF) - Young Scientists’ Conclave (YSC), Dec 8-11, 2016Theme: Smart City Abstract ID:CITY_40

Research Purpose: ‘Shared Economy’ or ‘Sharing Economy’ is under vigorous discussion currently due to the increased influx of shared attributes in transportation (Uber, Lyft) or in accommodation (AirBnB) serving as viable examples. This type of shared economy and its direct impacts on the built environment and urban policies is explored.
What is a football champion made of?
Creators: name: Matos, Rui
name: Rodrigues, Filipe
name: Amaro, Nuno
name: Antunes, Raul
name: Jacinto, Miguel
name: Mendes, Diogo
name: Monteiro, Diogo
Publisher: name: Motricidade
Year: 2023

description: The present study aimed to compare the scored and conceded goals of the top six European football leagues (Portugal, Spain, France, Italy, England, and Germany) between 2001 and 2020. The champions have a mean combo (indicator that combines attack and defence ranking) result between 1 and 1.40. The French and Italian leagues were the only ones where variation coefficients of this combo result overpassed 50% (71 and 59%, respectively) compared to the remaining football leagues. Further subsequent analysis showed that the Portuguese and French leagues differ significantly from Italy in terms of the best attack position of the champions (Z=3.196; p=0.01; η2=0.123). Regarding position in the defensive ranking, Portugal and Italy showed significantly different results compared to France (Z=3.763; p=0.003; η2=1.42). Besides, the only two countries with significant differences in scored and conceded goals positioning were France (attack better than defence; t=-3; p<0.01; d=2.236) and Italy (defence better than attack; t=2.881 p<0.01; d=1.164). Hence, in the French football league, a higher attack performance than a defence seems to indicate the champion. Oppositely, in the Italian football league, champions traditionally occupy top positioning on defence, even if they do not present the same performance on scored goals.
description: Motricidade, Vol. 19 No. 4 (2023): Motricidade
Additional file 2: Figure S2. of Ectopic expression of the apple nucleus-encoded thylakoid protein MdY3IP1 triggers early-flowering and enhanced salt-tolerance in Arabidopsis thaliana
Creators: name: Yu, Jian-Qiang
name: Wang, Jia-Hui
name: Cui-Hui Sun
name: Quan-Yan Zhang
name: Hu, Da-Gang
name: Hao, Yu-Jin
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 20199 Astronomical and Space Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Developmental Biology
subject: Plant Biology
subject: 60506 Virology

description: Early flowering phenotype in the MdY3IP1-expressing transgenic Arabidopsis plants under short-days condition. (DOC 702Â kb)
Interactive plots and the spectrum of data visualization
Creators: name: Karakuzu, Agah
Publisher: name: Zenodo
Year: 2020
Subjects: Data visualization, interactive figures, plotly, dash, dashboards, data art, interactive experience, reproducibility, open science, open source

description: If you can print something into a static PDF, it means that you are allowed to share data (at least) on that level. So why hide those data points in scatter plots, for example? In this presentation, I tried to breakdown the components of a data visualization practice that facilitates the creation of "repeatable" figures. Bonus: Useful resources to create eye-candy infographics.
Effect of resisted sled sprint with different loads on running velocity, step frequency, and step length in trained collegiate track and field athletes
Creators: name: Hamamichi, Takeru
name: Naoi, Kiyotaka
name: Shigeta, Susumu
name: Morais, Jorge
name: Marinho, Daniel Almeida
name: Moriyama, Shin-Ichiro
Publisher: name: Motricidade
Year: 2023

description: Resisted sled sprint (RSS) is a traditional sprint training in which a variety of loads are used for multiple aims. Nevertheless, a detailed analysis of the effects of different loads has not yet been performed. Therefore, this study aimed to examine the effects of load differences on running velocity, step frequency, and step length during RSS in trained collegiate track and field athletes. Twenty-one collegiate track and field male athletes (20.6±1.3 years) performed eight 60-m sprints with and without a resisted sled. The sled loads were individually set based on the participant's body mass (BM) and were applied in 10% increments from 20% to 80% of BM. The running distance was divided into six 10-m phases. The mean running velocity, step frequency and step length at each phase, and interactions were analysed. All indices decreased with increasing loads. Significant differences were observed in running velocity and step frequency between all loads, except between 70% and 80% of BM, and in the step length between all loads. The maximum values for the variables appeared in different phases according to the load. These results suggested that athletes and coaches should consider that sprinting performance during RSS varies with load.
description: Motricidade, Vol. 19 No. 4 (2023): Motricidade
Additional file 1: of Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers
Creators: name: Hale, Vanessa
name: Jeraldo, Patricio
name: Chen, Jun
name: Mundy, Michael
name: Yao, Janet
name: Priya, Sambhawa
name: Keeney, Gary
name: Lyke, Kelly
name: Ridlon, Jason
name: White, Bryan
name: French, Amy
name: Thibodeau, Stephen
name: Diener, Christian
name: Resendis-Antonio, Osbaldo
name: Gransee, Jaime
name: Dutta, Tumpa
name: Petterson, Xuan-Mai
name: Sung, Jaeyun
name: Blekhman, Ran
name: Boardman, Lisa
name: Larson, David
name: Nelson, Heidi
name: Chia, Nicholas
Publisher: name: figshare
Year: 2018
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: Evolutionary Biology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Science Policy
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Inorganic Chemistry
subject: FOS: Chemical sciences

description: Figure S1. Unweighted Unifrac distances between tumor and normal-associated microbiota in dMMR and pMMR. Figure S2. Venn diagram highlighting number of microbes that overlap between tumor and normal samples in relation to MMR status (dMMR = red font, pMMR = green font, red circles = tumor samples, blue circles =normal samples). Figure S3. Microbes significantly enriched in tumor as compared to normal samples (colon tissue and mucosa) in individuals with dMMR CRC: a) Bacteroides fragilis and b) Fusobacterium nucleatum. Figure S4. Differentially abundant OTUs between patient-matched tumor and normal samples in individuals with dMMR CRC from an independent cohort. Table S1. Table S1: List of PATRIC model IDs and associated sOTUs. Table S2. Microbes identified as differentially abundant in tumor as compared to normal samples (tissue and mucosa) from individuals with dMMR or pMMR CRC. Table S3. sOTUs enriched in tumor samples (colon tissue and mucosa) as compared to normal adjacent samples in individuals with dMMR CRC. Table S4. sOTUs enriched in tumor samples (colon tissue and mucosa) as compared to normal adjacent samples in individuals with pMMR CRC. Table S5. sOTUs enriched in the proximal or distal colon (colon tissue and mucosa) of individuals with dMMR CRC. Table S6. sOTUs enriched in the proximal or distal colon (colon tissue and mucosa) of individuals with pMMR CRC. Table S7. Differentially abundant microbes in individuals with dMMR CRC from an independent cohort. Table S8. Differentially abundant microbes in individuals with pMMR CRC from an independent cohort. (PDF 2790 kb)
The relationship between training load, physical performance and physiological adaptations in Rugby football players: A systematic review
Creators: name: Paiva, Eduardo
name: Valentim, Sérgio
name: Reis, Tiago
name: Teixeira, José E.
name: Branquinho, Luis
name: Fortunato, Álvaro
name: Forte, Pedro
Publisher: name: Motricidade
Year: 2023

description: Applying appropriate training loads in accordance with the defined objectives promotes optimal physical and physiological adaptations, reduces the likelihood of illness and injury and, therefore, increases the possibility of success during Rugby. The aim of this review was to compile and systematise the information in the literature on the association between training load variables (internal and external) and performance outcomes in Rugby. As such, the main objective will be to conduct a systematic review of the published literature to identify the physical and physiological performance variables in Rugby sport to monitor the training load. Following the preferred reporting item for systematic reviews and meta-analyses (PRISMA) and PICOS approach, the search was adapted and conducted systematically only in the PubMed database, which, in itself, also restricts the search spectrum of the paper, thus conferring a limitation to the present academic work. The search was conducted in PubMed throughout the possible temporal spectrum since there is still little robustness in the literature about rugby sports performance. Articles were selected by pre-defined selection criteria, including observational, randomised clinical and clinical trial studies. After further screening, and based on the inclusion criteria of the papers, the result of the analysis of the relevance of the studies, the final set of analysis resulted in 16 articles. From the studies compiled in this review, there seems to be a strong correlation between the perceived exertion (RPE) and the prescription and definition of the training load applied in Rugby athletes. The RPE reflects the most used and analysed variable throughout all the studies. Several articles reflect a strong relationship between the training load, the inter-individual capacity of each athlete and their tolerance to the load (player load).
description: Motricidade, Vol. 19 No. 4 (2023): Motricidade
MOESM2 of Single nucleotide polymorphisms in genes encoding penicillin-binding proteins in Î˛-lactamase-negative ampicillin-resistant Haemophilus influenzae in Japan
Creators: name: Misawa, Kazuhisa
name: Tarumoto, Norihito
name: Tamura, Shinsuke
name: Morichika Osa
name: Hamamoto, Takaaki
name: Yuki, Atsushi
name: Kouzaki, Yuji
name: Imai, Kazuo
name: Runtuwene Ronald
name: Yamaguchi, Toshiyuki
name: Murakami, Takashi
name: Shigefumi Maesaki
name: Suzuki, Yutaka
name: Kawana, Akihiko
name: Maeda, Takuya
Publisher: name: figshare
Year: 2018
Subjects: subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 2. Antibiotic minimum inhibitory concentrations (MICs) for Î˛-lactamase non-producing H. influenzae examined in this study.