cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
ABCperf: Performance Evaluation of Fault Tolerant State Machine Replication Made Simple: Demo Abstract
Creators: name: Spannagel, Tilo
name: Leinweber, Marc
name: Castro, Adriano
name: Hartenstein, Hannes
Publisher: name: Association for Computing Machinery (ACM)
Year: 2023
Subjects: Emulation
Fault injection
Performance analysis

description: We demonstrate a framework that simplifies the performance evaluation of fault tolerant State Machine Replication in the permissioned model. ABCperf offers a message passing abstraction with eventual delivery on top of which interchangeable Atomic Broadcast algorithms and decentralized applications can be independently implemented. Varying network quality (i.e., latency, packet loss) and attacker behavior (i.e., omission faults) can be directly configured and are emulated by the ABCperf core. The framework allows the real-time manipulation of configuration options and visualizes performance indicators and statistics in real time.
Optimisation and characterisation of the orange pigment produced by a cold adapted strain of Penicillium sp. (GBPI_P155) isolated from mountain ecosystem
Creators: name: Pandey, Neha
name: Jain, Rahul
name: Pandey, Anita
name: Tamta, Sushma
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy

description: With globalisation and growing health risks of synthetic colourants, search for pigments from natural sources has increased owing to their non-toxic nature. The present study highlights the bioprospection of natural pigment from a cold adapted fungal strain of Penicillium sp. (GBPI_P155), isolated from soil of Indian Himalayan region. The fungus produced insoluble and orange-coloured pigment in liquid medium with maximum production recorded in potato dextrose (PD) broth at 15°C and 3 pH, while maximum biomass was produced at 25°C and pH 3. While examining the effect of different mineral salts, and carbon and nitrogen sources on pigment production, maximum accumulation of pigment was recorded in PD broth supplemented with 2% maltose. Following production, extraction of pigment was performed using chloroform and characterised partially by UV/vis (λmax at 495 nm and a shoulder peak at 530 nm) and Fourier Transform Infrared (FT-IR) spectroscopy. Thin layer chromatography of chloroform extract resulted in separation of pigment in three fractions with Rf values 0.911, 0.852 and 0.808, which were further analysed using Liquid Chromatography Mass Spectrometry (LC/MS). The overall approach resulted in identification of pigment as a mixture of different derivatives of carotenoids. The extracted pigment also possessed antimicrobial activity against Gram-positive and Gram-negative bacteria and actinobacteria.
title: Do Conspecific Soil Microorganisms Inhibit Potentilla recta?
Creators: name: Duran, Faythe
Publisher: name: Western Washington University
Year: 2017

description:
In the U.S., Potentilla recta is an invasive, exotic forb. Previous research suggests that the soil microbes of native congeners (relatives within the same genus as P. recta) may inhibit P. recta, presumably because phylogenetically similar species may culture and be susceptible to similar pathogens. Our study aimed to answer three questions: (1) how do the fungal communities within the roots of P. recta compare to the fungal communities within the roots of neighboring congeners Potentilla gracilis and Drymocallis glandulosa (hereinafter referred to as the congeners) and native forbs, (2) what are the effects of the whole microbial community (microflora, microfauna, and some mesofauna mm), and the small microbial community (microflora, µm) on P. recta, (3) is there evidence that conspecific soil microbes mediate the distribution of P. recta in the field?

To address question one, we used high-throughput sequencing to compare the fungal communities within the roots of P. recta, its native congeners and neighboring forbs. To address our second question, we conducted a greenhouse experiment testing the effects of microbe fraction [none, small (< 20 µm), whole (< 2 mm)] and microbe source plant (congeners, forb, grass, and P. recta) on P. recta’s biomass. To address our third question, we observed and analyzed the distribution of P. recta in relation to its congeners in an intermountain grassland in Western Montana.

The fungal communities within the roots of P. recta and its congeners were different from other neighboring forbs, but pathogen abundance did not correspond to P. recta biomass. Further, the fungal communities within the roots of P. recta were unchanged by neighboring plant identity. In the greenhouse, we found reduced P. recta biomass from the whole microbial community collected from all source plants, but biomass did not differ significantly by source plant. Additionally, the magnitude of this negative effect was correlated with percent of colonization by arbuscular mycorrhizal fungi. We found neutral effects from the small microbe fraction, and no significant differences among source plant. In the field P. recta and other common grassland forbs were distributed at equal distances from the native congeners. We found no association between P. recta and the congeners co-occurring at the landscape scale. Overall, our results contradict previous findings and suggest that the direct and indirect effects of soil microbes on P. recta are nonspecific.
Comparative study of genome-wide plant biomass-degrading CAZymes in white rot, brown rot and soft rot fungi
Creators: name: Kameshwar, Ayyappa Kumar Sista
name: Qin, Wensheng
Publisher: name: Taylor & Francis
Year: 2018
Subjects: subject: Microbiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology

description: We have conducted a genome-level comparative study of basidiomycetes wood-rotting fungi (white, brown and soft rot) to understand the total plant biomass (lignin, cellulose, hemicellulose and pectin) -degrading abilities. We have retrieved the genome-level annotations of well-known 14 white rot fungi, 15 brown rot fungi and 13 soft rot fungi. Based on the previous literature and the annotations obtained from CAZy (carbohydrate-active enzyme) database, we have separated the genome-wide CAZymes of the selected fungi into lignin-, cellulose-, hemicellulose- and pectin-degrading enzymes. Results obtained in our study reveal that white rot fungi, especially Pleurotus eryngii and Pleurotus ostreatus potentially possess high ligninolytic ability, and soft rot fungi, especially Botryosphaeria dothidea and Fusarium oxysporum sp., potentially possess high cellulolytic, hemicellulolytic and pectinolytic abilities. The total number of genes encoding for cytochrome P450 monooxygenases and metabolic processes were high in soft and white rot fungi. We have tentatively calculated the overall lignocellulolytic abilities among the selected wood-rotting fungi which suggests that white rot fungi possess higher lignin and soft rot fungi potentially possess higher cellulolytic, hemicellulolytic and pectinolytic abilities. This approach can be applied industrially to efficiently find lignocellulolytic and aromatic compound-degrading fungi based on their genomic abilities.
Powers of ideals and convergence of Green functions with colliding poles
Creators: name: Rashkovskii, Alexander
name: Thomas, Pascal J.
Publisher: name: arXiv
Year: 2012
Subjects: subject: Complex Variables (math.CV)
subject: FOS: Mathematics
subject: 32U35, 32A27

description: Let us have a family of ideals of holomorphic functions vanishing at N distinct points of a complex manifold, all tending to a single point. As is known, convergence of the ideals does not guarantee the convergence of the pluricomplex Green functions to the Green function of the limit ideal; moreover, the existence of the limit of the Green functions was unclear. Assuming that all the powers of the ideals converge to some ideals, we prove that the Green functions converge, locally uniformly away from the limit pole, to a function which is essentially the upper envelope of the scaled Green functions of the limits of the powers. As examples, we consider ideals generated by hyperplane sections of a holomorphic curve near its singular point. In particular, our result explains recently obtained asymptotics for 3-point models.
description: 15 pages; typesetting errors fixed
Additional file 1 of Undiagnosed hypertension and its determinants among hypertensive patients in rural districts of northwest Ethiopia: a mediation analysis
Creators: name: Teshome, Destaw Fetene
name: Balcha, Shitaye Alemu
name: Ayele, Tadesse Awoke
name: Atnafu, Asmamaw
name: Gelaye, Kassahun Alemu
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy

description: Supplementary Material 1
Additional file 1 of Bimetallic Co–Fe sulfide and phosphide as efficient electrode materials for overall water splitting and supercapacitor
Creators: name: Bhardwaj, Shiva
name: Srivastava, Rishabh
name: Mageto, Teddy
name: Chaudhari, Mahesh
name: Kumar, Anuj
name: Sultana, Jolaikha
name: Mishra, Sanjay R.
name: Perez, Felio
name: Gupta, Ram K.
Publisher: name: figshare
Year: 2023
Subjects: subject: Space Science
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Marine Biology
subject: Science Policy

description: Additional file 1: Figure S1(a-k) The (a, d, and g)show the XPS spectra of O1s, Co 2p, and Fe 2p of as-synthesized CoFe, whereas (b,e, and h) follow the XPS spectra of O1s, Co 2p, and Fe 2p of CoFe-S and (c, f, and i) shows the XPS spectra of O1s, Co 2p, and Fe 2p of CoFe-P. (j and k) shows the XPS spectra of S in CoFe-S and P in CoFe-P. Figure S2 (a–c) The XPS Survey for (a) CoFe, (b) CoFe-S, and (c) CoFe-P Sample. Figure S3 EIS of CoFe sample at the with different applied potentials. Figure S4 EIS of CoFe-S sample at the different applied potentials. Figure S5 EIS of CoFe-P sample at the different applied potentials. Figure S6 (a–d) Shows the polarization curve of OER and HER for CoFe, and CoFe-S nanocomposite. Figure S7 (a–c) Shows the CA curves for all the as-prepared CoFe, CoFe-S, and CoFe-P-nanocomposite. (d) shows the CV curves before and after CA testing of CoFe-P. Figure S8 CV scan curves from 2 to 300 mV/s for CoFe-S. Figure S9 (a, b) The charge-discharge curves of CoFe, and CoFe-S at various current density ranging from 30-1 A/g. Figure S10 Shows the Nyquist plots of all the as-prepared CoFe, CoFe-S, and CoFe-P-nanocomposite. Video S1 Shows the three-electrode system for HER/OER. Video S2 Shows the electrolyzer testing. Table S1 Comparison of the synthesized samples for HER electrocatalytic activity on different parameters. Table S2 Comparison of the synthesized samples for OER electrocatalytic activity on different parameters. Table S3 Comparison of the previously reported electrocatalysts for HER and OER. Table S4 All the calculated values for ESR and Cdl are depicted below. Table S5 Comparison of the previously reported capacitance values.
Advantages of gated silicon single photon detectors
Creators: name: Lunghi, T.
name: Pomarico, E.
name: Barreiro, C.
name: Stucki, D.
name: Sanguinetti, B.
name: Zbinden, H.
Publisher: name: arXiv
Year: 2012
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We present a gated silicon single photon detector based on a commercially available avalanche photodiode. Our detector achieves a photon detection efficiency of 45\pm5% at 808 nm with 2x 10^-6 dark count per ns at -30V of excess bias and -30°C. We compare gated and free-running detectors and show that this mode of operation has significant advantages in two representative experimental scenarios: detecting a single photon either hidden in faint continuous light or after a strong pulse. We also explore, at different temperatures and incident light intensities, the "charge persistence" effect, whereby a detector clicks some time after having been illuminated.
Additional file 6 of Open-label randomized controlled trial of ultra-low tidal ventilation without extracorporeal circulation in patients with COVID-19 pneumonia and moderate to severe ARDS: study protocol for the VT4COVID trial
Creators: name: Richard, Jean-Christophe
name: Yonis, Hodane
name: Bitker, Laurent
name: Roche, Sylvain
name: Wallet, Florent
name: Dupuis, Claire
name: Serrier, Hassan
name: Argaud, Laurent
name: Thiery, Guillaume
name: Delannoy, Bertrand
name: Pommier, Christian
name: Abraham, Paul
name: Muller, Michel
name: Aubrun, Frederic
name: Sigaud, Florian
name: Rigault, Guillaume
name: Joffredo, Emilie
name: Mezidi, Mehdi
name: Terzi, Nicolas
name: Rabilloud, Muriel
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Cancer
subject: Mental Health
subject: Computational Biology

description: Additional file 6. Case report form.
Two-Component Structure of the Hbeta Broad-Line Region in Quasars. I. Evidence from Spectral Principal Component Analysis
Creators: name: Hu, Chen
name: Wang, Jian-Min
name: Ho, Luis C.
name: Ferland, Gary J.
name: Baldwin, Jack A.
name: Wang, Ye
Publisher: name: arXiv
Year: 2012
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We report on a spectral principal component analysis (SPCA) of a sample of 816 quasars, selected to have small Fe II velocity shifts with spectral coverage in the rest wavelength range 3500--5500 Å. The sample is explicitly designed to mitigate spurious effects on SPCA induced by Fe II velocity shifts. We improve the algorithm of SPCA in the literature and introduce a new quantity, \emph{the fractional-contribution spectrum}, that effectively identifies the emission features encoded in each eigenspectrum. The first eigenspectrum clearly records the power-law continuum and very broad Balmer emission lines. Narrow emission lines dominate the second eigenspectrum. The third eigenspectrum represents the Fe II emission and a component of the Balmer lines with kinematically similar intermediate velocity widths. Correlations between the weights of the eigenspectra and parametric measurements of line strength and continuum slope confirm the above interpretation for the eigenspectra. Monte Carlo simulations demonstrate the validity of our method to recognize cross talk in SPCA and firmly rule out a single-component model for broad Hbeta. We also present the results of SPCA for four other samples that contain quasars in bins of larger Fe II velocity shift; similar eigenspectra are obtained. We propose that the Hbeta-emitting region has two kinematically distinct components: one with very large velocities whose strength correlates with the continuum shape, and another with more modest, intermediate velocities that is closely coupled to the gas that gives rise to Fe II emission.
description: 22 pages, 17 figures, accepted for publication in The Astrophysical Journal
Single molecule detection of nanomechanical motion
Creators: name: Puller, Vadim
name: Lounis, Brahim
name: Pistolesi, Fabio
Publisher: name: arXiv
Year: 2012
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We investigate theoretically how single-molecule spectroscopy techniques can be used to perform fast and high resolution displacement detection and manipulation of nanomechanical oscillators, such as singly clamped carbon nanotubes. We analyze the possibility of real time displacement detection by the luminescence signal and of displacement fluctuations by the degree of second order coherence. Estimates of the electro-mechanical coupling constant indicate that intriguing regimes of strong back-action between the two-level system of a molecule and the oscillator can be realized.
description: This arXiv submission includes the manuscript and the supplementary material
X-ray stacking of Lyman break galaxies in the 4\,Ms CDF-S - X-ray luminosities and star formation rates across cosmic time
Creators: name: Zinn, Peter-Christian
name: Blex, Stefan
name: Seymour, Nicholas
name: Bomans, Dominik J.
Publisher: name: arXiv
Year: 2012
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: FOS: Physical sciences

description: Lyman Break Galaxies (LBGs) are widely thought to be prototypical young galaxies in the early universe, particularly representative of those undergoing massive events of star formation. Therefore, LBGs should produce significant amounts of X-ray emission. We aim to trace the X-ray luminosity of Lyman Break Galaxies across cosmic time and from that derive constraints on their star formation history. We utilize the newly released 4 Ms mosaic obtained with the Chandra X-ray Observatory, the deepest X-ray image to date, alongside with the superb spectroscopic data sets available in the CDF-S survey region to construct large but nearly uncontaminated samples of LBGs across a wide range of redshift (0.5 < z < 4.5) which can be used as input samples for stacking experiments. This approach allows us to trace the X-ray emission of Lyman Break Galaxies to even lower, previously unreachable, flux density limits (~10^-18 mW m^-2) and therefore to larger redshifts. We reliably detect soft-band X-ray emission from all our input redshift bins except for the highest redshift (z~4) one. From that we derive rest-frame 2-10 keV luminosities and infer star formation rates and stellar masses. We find that star formation in LBGs peaks at a redshift of z_peak~3.5 and then decreases quickly. We also see a characteristic peak in the specific star formation rate (sSFR=SFR/M_*) at this redshift. Furthermore, we calculate the contribution of LBGs to the total cosmic star formation rate density (SFRD) and find that the contribution of LBGs is negligible. Therefore, we conclude that most of the star formation in the early universe takes place in lower luminosity galaxies as suggested by hierarchical structure formation models.
description: 11 pages, 7 figures, accepted for publication in A&A
Additional file 1 of Growth-coupled anaerobic production of isobutanol from glucose in minimal medium with Escherichia coli
Creators: name: Boecker, Simon
name: Schulze, Peter
name: Klamt, Steffen
Publisher: name: figshare
Year: 2023
Subjects: subject: Microbiology
subject: FOS: Biological sciences

description: Additional file 1: Figure S1. Time courses of biomass, glucose, iBuOH, acetate, and ethanol concentrations in the medium and accumulated acetate and glucose consumption as well as estimated total production of ethanol and iBuOH of strain SB001-pIBA in a second pulsed fed-batch bioreactor cultivation.
Free-surface flow simulations for discharge-based operation of hydraulic structure gates
Creators: name: Erdbrink, C. D.
name: Krzhizhanovskaya, V. V.
name: Sloot, P. M. A.
Publisher: name: arXiv
Year: 2012
Subjects: subject: Computational Engineering, Finance, and Science (cs.CE)
subject: Fluid Dynamics (physics.flu-dyn)
subject: FOS: Computer and information sciences
subject: FOS: Physical sciences
subject: 76D05

description: We combine non-hydrostatic flow simulations of the free surface with a discharge model based on elementary gate flow equations for decision support in operation of hydraulic structure gates. A water level-based gate control used in most of today's general practice does not take into account the fact that gate operation scenarios producing similar total discharged volumes and similar water levels may have different local flow characteristics. Accurate and timely prediction of local flow conditions around hydraulic gates is important for several aspects of structure management: ecology, scour, flow-induced gate vibrations and waterway navigation. The modelling approach is described and tested for a multi-gate sluice structure regulating discharge from a river to the sea. The number of opened gates is varied and the discharge is stabilized with automated control by varying gate openings. The free-surface model was validated for discharge showing a correlation coefficient of 0.994 compared to experimental data. Additionally, we show the analysis of CFD results for evaluating bed stability and gate vibrations.
description: 25 pages, 16 figures
Additional file 6 of National, subnational and risk attributed burden of chronic respiratory diseases in Iran from 1990 to 2019
Creators: name: Heidari-Foroozan, Mahsa
name: Aryan, Alisam
name: Esfahani, Zahra
name: Shahrbaf, Mohammad Amin
name: Moghaddam, Sahar Saeedi
name: Keykhaei, Mohammad
name: Ghasemi, Erfan
name: Rashidi, Mohammad-Mahdi
name: Rezaei, Nazila
name: Ghamari, Seyyed-Hadi
name: Abbasi-Kangevari, Mohsen
name: Fateh, Sahar Mohammadi
name: Farzi, Yousef
name: Rezaei, Negar
name: Larijani, Bagher
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Computational Biology

description: Additional file 6: Table S2. Burden measures of CRDs for all ages number and ASR with percentage change by sex in all provinces, 1990 vs 2019. Data in parentheses are 95% Uncertainty Intervals (95% UIs); DALYs= Disability-Adjusted Life Years; YLLs= Years of Life Lost; YLDs= Years Lived with Disability
Additional file 1 of Enhanced survival of hypoimmunogenic otic progenitors following intracochlear xenotransplantation: repercussions for stem cell therapy in hearing loss models
Creators: name: Andrade da Silva, Luisa H.
name: Heuer, Rachel A.
name: Roque, Christian B.
name: McGuire, Tammy L.
name: Hosoya, Tomonori
name: Kimura, Hironobu
name: Tamura, Kouichi
name: Matsuoka, Akihiro J.
Publisher: name: figshare
Year: 2023
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Evolutionary Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Hematology

description: Additional file 1. Supplemental information. Section 1: Supplementary methods. 1.1. Differentiation of hi-iPSCs toward otic neural progenitors. 1.2. Quantitative RT-qPCR. 1.3. Immunocytochemistry. 1.4. Flow cytometry analysis. 1.5. Generation of ONP spheroids for transplantation. 1.6. Intracochlear transplantation of ONPs through round window. 1.7. Immunohistochemistry and donor cell quantification; Section 2: Supplementary figures. Figure S1. Overexpression of HLA-G and PD-L1 genes in hypoimmunogenic iPSCs. Figure S2. G-banded karyotyping of hypoimmunogenic iPSCs. Figure S3. Surface expression of HLA-G and PD-L1 transgenes diminishes in hypoimmunogenic cells during differentiation from iPSC to ONP stage. Figure S4. Intratympanic transplantation of ONP spheroids. Figure S5. Representation of the mid-modiolar cryosections used for quantification of donor cells. Figure S6. Intracochlear transplantation of wild-type iPSC–derived ONP spheroids (wt-ONP). Figure S7. Intracochlear transplantation of hypoimmunogenic iPSC–derived ONP spheroids (hi-ONP). Figure S8. Distribution of ONP count/mm² values.
Additional file 5 of National, subnational and risk attributed burden of chronic respiratory diseases in Iran from 1990 to 2019
Creators: name: Heidari-Foroozan, Mahsa
name: Aryan, Alisam
name: Esfahani, Zahra
name: Shahrbaf, Mohammad Amin
name: Moghaddam, Sahar Saeedi
name: Keykhaei, Mohammad
name: Ghasemi, Erfan
name: Rashidi, Mohammad-Mahdi
name: Rezaei, Nazila
name: Ghamari, Seyyed-Hadi
name: Abbasi-Kangevari, Mohsen
name: Fateh, Sahar Mohammadi
name: Farzi, Yousef
name: Rezaei, Negar
name: Larijani, Bagher
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Computational Biology

description: Additional file 5: Table S1. Burden measures of CRDs for all ages number and ASR with percentage change by sex at national level, 1990 vs 2019. Data in parentheses are 95% Uncertainty Intervals (95% UIs); DALYs= Disability-Adjusted Life Years; YLLs= Years of Life Lost; YLDs= Years Lived with Disability
Additional file 4 of National, subnational and risk attributed burden of chronic respiratory diseases in Iran from 1990 to 2019
Creators: name: Heidari-Foroozan, Mahsa
name: Aryan, Alisam
name: Esfahani, Zahra
name: Shahrbaf, Mohammad Amin
name: Moghaddam, Sahar Saeedi
name: Keykhaei, Mohammad
name: Ghasemi, Erfan
name: Rashidi, Mohammad-Mahdi
name: Rezaei, Nazila
name: Ghamari, Seyyed-Hadi
name: Abbasi-Kangevari, Mohsen
name: Fateh, Sahar Mohammadi
name: Farzi, Yousef
name: Rezaei, Negar
name: Larijani, Bagher
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Computational Biology

description: Additional file 4: Figure S4. Comparison of YLDs and DALYs by province.
title: How does the online instagrammer ‘The Sweet Feminist’ demonstrate aspects of citizen journalism?
Creators: name: Fitz, Leanne
name: Smith, Shannon
name: Khemlani, Ekta M.
name: Murray, Lara
Publisher: name: Oxford Brookes University
Year: 2020

description: ‘The Sweet Feminist’ is an online instagram influencer who uses images of cakes and cookies to comment on current events. This area of research is of particular interest as it demonstrates the contentions between traditional and new forms of news and media broadcasting. This research firstly investigates how ‘The Sweet Feminist’ uses monitorisation and careful selection to control the content that she posts online, a process commonly known as ‘gatekeeping’, whilst also abiding to the rules and restrictions set out by the social media site, Instagram. Secondly, the concept of the public sphere, a social space for conversation between individuals focused on large public debates, is explored using textual analysis techniques in order to explore how online public spheres differ from their offline equivalents. It is therefore shown that ‘The Sweet Feminist’ redefines the boundaries associated with the public sphere to discuss areas typically considered of private concern, such as female contraception and abortion rights, thus allowing women to discuss their issues in traditionally masculine spaces. Overall it was found that ‘The Sweet Feminist’ is a citizen journalist who employs new forms of gatekeeping online and uses her posts to break down the boundaries of the private/public sphere, thereby providing new discursive spaces for marginalised voices.
title: The Effectiveness of Forested and Hedgerow Riparian Buffers for Buffering Water Temperature and Improving Fish Habitat in Agricultural Waterways in Western Washington
Creators: name: Shaw, Jessica L.
Publisher: name: Western Washington University
Year: 2018

description:
Riparian restoration is a component of nearly every salmon recovery strategy. In the lowlands of the Nooksack River flood plain in Western Washington State, planted riparian buffers in agricultural landscapes must perform multiple functions to improve water quality and fish habitat while still allowing access to agricultural land use. Relatively narrow, 15 feet (4.6 meter) wide buffers, are a more palatable option for landowners than 35 feet (10.7 meters) which is required to be considered for cost incentive programs such as the Conservation Reserve Enhancement Program (CREP). We wanted to discover whether these two relatively narrow buffer widths would result in detectable differences in the effectiveness of water temperature maintenance (reduction from upstream to downstream warming via % effective shade) and differences in fish assemblage abundance. Results from this research conducted in 2014-2015 indicate that in 100-m long reaches, narrow, 15-ft-wide buffers provide similar amounts of shade as wider, 35-ft- wide buffers, but differences in upstream and downstream water temperature in terms of heat units were inconclusive. Heat units were expressed as the daily cumulative degrees above 17.5°C relative to the number of temperature readings each day (Biologically Sensitive Heat Units). This excluded several sites from analysis that never reached temperatures above 17.5°C and temperature maintenance at the remaining sites were highly variable. Differences in width was not a significant factor detecting differences in relative abundances of fish communities, but the 15’ and 35’ sites had greater species diversity and greater abundances of native coldwater species, such as coho salmon and cutthroat trout, than the sites without buffers.
title: An Exploration of the Relationship Between Burnout and Depression in Intercollegiate Athletes
Creators: name: Martignetti, Arianna
Publisher: name: Western Washington University
Year: 2017

description:
Researchers in occupational settings have found similarities in the symptomatology of workplace burnout and depression (Bianchi, Schonfeld, & Laurent, 2015). However, sport psychology researchers have stated that sport burnout and depression are separate constructs (Cresswell & Eklund, 2006). The purpose of the current study was to investigate the relationship between burnout and depression to help determine if their symptoms are indeed distinct, or if they potentially overlap. An additional purpose was to assess gender differences. At present, there are no studies examining the relationship between burnout and depression in an intercollegiate athlete sample. Participants were 422 intercollegiate athletes from all divisions of the NCAA, NAIA and NJCAA. Athletes completed an anonymous online survey consisting of the Athlete Burnout Questionnaire (ABQ; Raedeke & Smith, 2001), the Zung Self-Rating Depression Scale (SDS; Zung, 1965), and two symptom checklists designed for this study. Results revealed a strong, statistically significant positive correlation (r = .600) between total burnout and depression scores. Moreover, each subscale of the ABQ was statistically significantly correlated to total depression scores. The correlation between burnout and depression was stronger in female athletes compared to male athletes; however, this difference was not statistically significant. Sixty-six percent of the sample reported having experienced what they defined as burnout from sport. Of this subsample, forty-seven percent reported that while “burned out,” they experienced five or more Diagnostic and Statistical Manual (DSM-V, American Psychiatric Association, 2013) symptoms of depression, with at least one being a depressed mood or loss of interest. The current study demonstrates there is a strong relationship between sport burnout and depression in intercollegiate athletes, indicating a possible overlap in symptoms. Thus, the findings suggest that the two constructs may be more similar than previously understood. Further, an increased understanding of the relationship between burnout and depression in sport may assist with prevention or screening, as well as contribute to more substantial treatment for burned out athletes.
Additional file 3 of National, subnational and risk attributed burden of chronic respiratory diseases in Iran from 1990 to 2019
Creators: name: Heidari-Foroozan, Mahsa
name: Aryan, Alisam
name: Esfahani, Zahra
name: Shahrbaf, Mohammad Amin
name: Moghaddam, Sahar Saeedi
name: Keykhaei, Mohammad
name: Ghasemi, Erfan
name: Rashidi, Mohammad-Mahdi
name: Rezaei, Nazila
name: Ghamari, Seyyed-Hadi
name: Abbasi-Kangevari, Mohsen
name: Fateh, Sahar Mohammadi
name: Farzi, Yousef
name: Rezaei, Negar
name: Larijani, Bagher
Publisher: name: figshare
Year: 2023
Subjects: subject: Medicine
subject: Biotechnology
subject: Ecology
subject: FOS: Biological sciences
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Computational Biology

description: Additional file 3: Figure S3. The rate of burden measures by sex and age group at subnational level. 1990 vs 2019.
title: Ongoing Exhumation and Recent Exposure of Sedimentary Outcrops on Mars
Creators: name: Williams, Joshua M.
Publisher: name: Western Washington University
Year: 2017

description:
Determining the habitability of ancient environments on Mars and their biosignature preservation potential is a primary goal of all recent Mars exploration missions. Because cosmogenic radiation destroys organic biosignatures at the Martian surface, freshly-exposed outcrops that have been previously protected by overburden provide potential sites where organic biosignatures could be observed. Scarp retreat is one common mechanism for exposing fresh outcrop surfaces. The absence of liquid water on Mars leaves aeolian processes to be the dominant eroding agent, and aeolian erosion drives scarp retreat by undercutting erosion-resistant cap rock that fails and breaks off from outcrops. This continual action creates bays and headlands. This study uses three methods to identify regions with freshly-exposed scarp surfaces using orbital images: (1) scarp orientation mapping; (2) identification of calved boulders; (3) identification of dust and drift deposition by color stretch analysis. These methods were consistent with surface observations from the Mars Science Laboratory (MSL) Curiosity rover in Gale crater. Scarp orientations in Gale crater show a distinct bay-signal (from the pattern of bays and headlands) that can be directly correlated with the known direction of ongoing aeolian scarp retreat. The bay-signal was also apparent at two of the Mars-2020 rover mission candidate landing sites: Eberswalde crater and Jezero crater. In a similar analysis of the Mars-2020 candidate landing sites Holden crater and Melas Basin, however, no clear bay-signal was identified. This work developed methods to detect recent scarp retreat on Mars and may provide a useful tool for identifying locations with high biosignature protection potential.
Non-overlapping domain decomposition methods in structural mechanics
Creators: name: Gosselet, Pierre
name: Rey, Christian
Publisher: name: arXiv
Year: 2012
Subjects: subject: Numerical Analysis (math.NA)
subject: Classical Physics (physics.class-ph)
subject: FOS: Mathematics
subject: FOS: Physical sciences

description: The modern design of industrial structures leads to very complex simulations characterized by nonlinearities, high heterogeneities, tortuous geometries... Whatever the modelization may be, such an analysis leads to the solution to a family of large ill-conditioned linear systems. In this paper we study strategies to efficiently solve to linear system based on non-overlapping domain decomposition methods. We present a review of most employed approaches and their strong connections. We outline their mechanical interpretations as well as the practical issues when willing to implement and use them. Numerical properties are illustrated by various assessments from academic to industrial problems. An hybrid approach, mainly designed for multifield problems, is also introduced as it provides a general framework of such approaches.
Validity and Reliability the Persian adaption of Mannheim Dream questionnaire (MADRE)
Creators: name: Shahabian, Masoud
name: Kargar, Elham
name: Sahbaie Ferdosi, Niyosha
name: Tajik, Fateme
name: Javdani Sorayani, Farangis
name: Akhtar Moghadam, Samane
name: EbadiRad, Mohamad
name: Jahantiq, Haniye
name: Gholamalizade, Vajihe
Publisher: name: International Journal of Dream Research
Year: 2018
Subjects: Dream recall; Nightmares; Lucid dreaming; Attitude towards dreams; Retest reliability

description: We conducted this study to assess the validity and reliability of the Persian version of Mannheim Dream (MADRE) questionnaire. The study population included students of School of Psychology, Ferdowsi University of Mashhad, Iran, who were selected randomly through the convenience sampling method. Reliability of the tool was evaluated by test–retest and Cronbach’s alpha methods. The Persian scale demonstrated good test-retest reliability (69%), and Cronbach’s alpha coefficient for the whole questionnaire was calculated at 0.85. Overall, 24 items with high reliability were retained from the final version of the questionnaire. Based on factor analysis, the following six factors emerged: concept of dream, effects of dreams on waking life, timing, experience and feelings, childhood memories, and articles and entries available. Our findings indicated that the Persian version of the MADRE questionnaire is a valid and reliable instrument.
description: International Journal of Dream Research, Vol 11, No 2 (October 2018)
Charge-Doping driven Evolution of Magnetism and non-Fermi-Liquid Behavior in the Filled Skutterudite CePt4Ge12-xSbx
Creators: name: Nicklas, M.
name: Kirchner, S.
name: Borth, R.
name: Gumeniuk, R.
name: Schnelle, W.
name: Rosner, H.
name: Borrmann, H.
name: Leithe-Jasper, A.
name: Grin, Yu.
name: Steglich, F.
Publisher: name: arXiv
Year: 2012
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The filled-skutterudite compound CePt4Ge12 is situated close to the border between intermediate-valence of Ce and heavy-fermion behavior. Substitution of Ge by Sb drives the system into a strongly correlated and ultimately upon further increasing the Sb concentration into an antiferromagnetically ordered state. Our experiments evidence a delicate interplay of emerging Kondo physics and the formation of a local 4f moment. An extended non-Fermi-liquid region, which can be understood in the framework of a Kondo-disorder model, is observed. Band-structure calculations support the conclusion that the physical properties are governed by the interplay of electron supply via Sb substitution and the concomitant volume effects.
description: 5 pages, 3 Figure
Posttraumatic Nightmare Content in Children and its Relation to Posttraumatic Psychopathology
Creators: name: Gray, Kristen Nicole
name: Cromer, Lisa DeMarni
Publisher: name: International Journal of Dream Research
Year: 2018
Subjects: nightmare content; posttraumatic nightmares; children; trauma

description: In adult populations, the more similar a posttraumatic nightmare is to a precipitating traumatic event, i.e., the replicativeness of the nightmare, the more distress one experiences, and the greater the frequency and severity of posttraumatic stress symptoms. Posttraumatic nightmare content in children and its relation to posttraumatic psychopathology remains unclear. Nightmare content and trauma-related themes within children’s posttraumatic nightmares remains relatively unexplored. Trauma-exposed children (n = 17) aged 5-17 years-old provided a posttraumatic nightmare narrative and answered questions about the replicativeness of their posttraumatic nightmare. Nightmare content and trauma-related themes were coded. Two one-way ANOVAs examined posttraumatic nightmare replicativeness to levels of posttraumatic stress and to nightmare distress. Findings showed that in children, posttraumatic nightmare replicativeness was associated with posttraumatic stress but not nightmare distress. The most common trauma-related themes in posttraumatic nightmares were safety and power/control. Girls’ nightmares more often contained pursuit and perceived threat whereas boys’ nightmares more often involved aggression. Our study is the first to examine trauma-related themes and qualitative aspects of posttraumatic nightmares in children with a variety of traumas. Future studies should examine gender differences and trauma-related themes, as these may have implications for our understanding and treatment of nightmares in children.
description: International Journal of Dream Research, Vol 11, No 2 (October 2018)
title: The 'F-Word': Awareness and Perceptions in  Fin-Fish Farming and Aquaculture Policies
Creators: name: Wrigley, Jordan
Publisher: name: Western Washington University
Year: 2017

description:
Fin-fish aquaculture and farming is a disputed and controversial issue in the United States. These controversies and disputes may occur in part because of perceptions of fin-fish aquaculture as threatening to local and regional environments, traditional lifeways, and occupations. These perceptions are complicated by the positive role aquaculture might play in addressing U.S. dependence on seafood imports, as well as issues of socio-economic access to fish and the associated health benefits. Further, how issues of fin-fish aquaculture are perceived, as well as what level of awareness and knowledge perceptions are based on, may impact policy decisions through public support and discourses. Yet, there are few comprehensive studies of perceptions of aquaculture in the U.S. or the implications for food systems and environments through policy decisions. The following thesis is an exploration of fin-fish aquaculture perceptions, awareness, and knowledge at three scales: national, regional, and individual. I have added to current social-aquaculture research by characterizing elements and aspects of perceptions at each scale in three discrete manuscript-style studies. Key findings in this research include correlation between awareness and perception among coastal stakeholders, emphasis on impacts to the natural environment and local food production in perceptions, and the changeability of perceptions in a learning context. Based on the collected findings from all three studies, I give recommendations for approaching fin-fish aquaculture in public policy and planning processes to reduce conflict and increase consensus in context-based goals for fin-fish aquaculture.
Siedlungsfunde der tiefstichkeramischen Kultur im Vorfeld der Großsteingräber im Haldenslebener Forst, Kr. Haldensleben
Creators: name: Stahlhofen, Heribert
Publisher: name: Jahresschrift für mitteldeutsche Vorgeschichte
Year: 2018

description: -
description: Jahresschrift für mitteldeutsche Vorgeschichte, Bd. 65 (1982): Jahresschrift für Mitteldeutsche Vorgeschichte
ACCESS-Background rate of adverse events-definition –Heart Failure
Creators: name: Kelters, I
name: Souverein, P
name: Huerta, C
name: Martín-Pérez, M
name: García-Poza, P
name: Belbachir, L
name: Willame, C
name: Durán, C
name: Sturkenboom, MCJM
Publisher: name: Zenodo
Year: 2021
Subjects: electronic health care databases, codes, AESI, vaccine, heart failure

description: This document contains the definition of Heart Failure and the operationalization to extract this event from different electronic health care databases in the EU, to calculate background rates of AESI The document contains the key definition, procedures and treatments, the diagnosis codes based on Codemapper output with changes/additions by data access providers, and when available published validation studies and background rates
description: This study (ACCESS project) was funded by the European Medicines Agency
Aberrant cytoplasmic intron retention is a blueprint for RNA binding protein mislocalization in amyotrophic lateral sclerosis
Creators: name: Tyzack, Giulia E
name: Neeves, Jacob
name: Crerar, Hamish
name: Klein, Pierre
name: Ziff, Oliver
name: Taha, Doaa M
name: Luisier, Raphaëlle
name: Luscombe, Nicholas M
name: Patani, Rickie
Publisher: name: The Francis Crick Institute
Year: 2021
Subjects: subject: Neurosciences
subject: FOS: Clinical medicine
subject: Tumour Biology
subject: Gene Expression
subject: Genetics & Genomics
subject: Cell Biology
subject: Stem Cells
subject: Computational & Systems Biology

description: We recently described aberrantly increased cytoplasmic SFPQ intron-retaining transcripts (IRTs) and concurrent SFPQ protein mislocalization as new hallmarks of amyotrophic lateral sclerosis (ALS). However the generalizability and potential roles of cytoplasmic IRTs in health and disease remain unclear. Here, using time-resolved deep-sequencing of nuclear and cytoplasmic fractions of hiPSCs undergoing motor neurogenesis, we reveal that ALS-causing VCP gene mutations lead to compartment-specific aberrant accumulation of IRTs. Specifically, we identify >100 IRTs with increased cytoplasmic abundance in ALS samples. Furthermore, these aberrant cytoplasmic IRTs possess sequence-specific attributes and differential predicted binding affinity to RNA binding proteins (RBPs). Remarkably, TDP-43, SFPQ and FUS—RBPs known for nuclear-to-cytoplasmic mislocalization in ALS—abundantly and specifically bind to this aberrant cytoplasmic pool of IRTs, as opposed to any individual IRT. Our data are therefore consistent with a novel role for cytoplasmic IRTs in regulating compartment-specific protein abundance. This study provides new molecular insight into potential pathomechanisms underlying ALS and highlights aberrant cytoplasmic IRTs as potential therapeutic targets.
Additional file 1 of The dynamic history of plastome structure across aquatic subclass Alismatidae
Creators: name: Li, Zhi-Zhong
name: Lehtonen, Samuli
name: Chen, Jin-Ming
Publisher: name: figshare
Year: 2023
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology
subject: Computational Biology

description: Additional file 1: Table S1. The genome content of all plastome sequences used in this study.
Jean Charles Balty und Wilfried van Rengen, Apamée de Syrie
Creators: name: Klee, Margot
Publisher: name: Bonner Jahrbücher
Year: 2018

description: Rezension zu: Jean Charles Balty und Wilfried van Rengen, Apamée de Syrie. Quartiers d’hiver de la Ile Légion parthique. Monuments funéraires de la nécropole militaire. Vubpress, Brüssel 1993. 55 Seiten, 28 Abbildungen.
description: Bonner Jahrbücher, Bd. 195.1995(1996): Bonner Jahrbücher
Additional file 2 of Water mass age structures the auxiliary metabolic gene content of free-living and particle-attached deep ocean viral communities
Creators: name: Coutinho, Felipe H.
name: Silveira, Cynthia B.
name: Sebastián, Marta
name: Sánchez, Pablo
name: Duarte, Carlos M.
name: Vaqué, Dolors
name: Gasol, Josep M.
name: Acinas, Silvia G.
Publisher: name: figshare
Year: 2023
Subjects: subject: Microbiology
subject: FOS: Biological sciences

description: Additional file 2: Fig. S1. Relative abundance patterns of viral scaffolds encoding DHFR genes. A) Stacked bar plots depicting the RPKM abundances (y-axis) of viral scaffolds across samples (x-axis), separated by free-living and particle-attached samples (panels). Sampling stations are sorted from left to right by increasing oxygen concentrations. B) Box plots depicting the differences in DHFR encoding scaffold abundances between free-living and particle-attached fractions. Boxes depict the median, the first and third quartiles. Whiskers extend to 1.5 of the interquartile ranges. Outliers are represented as dots above or below whiskers. The p-values of each comparison obtained with the Mann-Whitney test are depicted above bars.