cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
The evolutionary dynamics of extrachromosomal DNA in human cancers.
Creators: name: Lange, Joshua T
name: Rose, John C
name: Chen, Celine Y
name: Pichugin, Yuriy
name: Xie, Liangqi
name: Tang, Jun
name: Hung, King L
name: Yost, Kathryn E
name: Shi, Quanming
name: Erb, Marcella L
name: Rajkumar, Utkrisht
name: Wu, Sihan
name: Taschner-Mandl, Sabine
name: Bernkopf, Marie
name: Swanton, Charles
name: Liu, Zhe
name: Huang, Weini
name: Chang, Howard Y
name: Bafna, Vineet
name: Henssen, Anton G
name: Werner, Benjamin
name: Mischel, Paul S
Publisher: name: The Francis Crick Institute
Year: 2022
Subjects: classificationCode: Tumour Biology
subject: Tumour Biology
classificationCode: Signalling & Oncogenes
subject: Signalling & Oncogenes
classificationCode: Genetics & Genomics
subject: Genetics & Genomics
classificationCode: Genome Integrity & Repair
subject: Genome Integrity & Repair
classificationCode: Human Biology & Physiology
subject: Human Biology & Physiology
classificationCode: Chemical Biology & High Throughput
subject: Chemical Biology & High Throughput
classificationCode: Ecology,Evolution & Ethology
subject: Ecology,Evolution & Ethology
classificationCode: Computational & Systems Biology
subject: Computational & Systems Biology

description: Oncogene amplification on extrachromosomal DNA (ecDNA) is a common event, driving aggressive tumor growth, drug resistance and shorter survival. Currently, the impact of nonchromosomal oncogene inheritance-random identity by descent-is poorly understood. Also unclear is the impact of ecDNA on somatic variation and selection. Here integrating theoretical models of random segregation, unbiased image analysis, CRISPR-based ecDNA tagging with live-cell imaging and CRISPR-C, we demonstrate that random ecDNA inheritance results in extensive intratumoral ecDNA copy number heterogeneity and rapid adaptation to metabolic stress and targeted treatment. Observed ecDNAs benefit host cell survival or growth and can change within a single cell cycle. ecDNA inheritance can predict, a priori, some of the aggressive features of ecDNA-containing cancers. These properties are facilitated by the ability of ecDNA to rapidly adapt genomes in a way that is not possible through chromosomal oncogene amplification. These results show how the nonchromosomal random inheritance pattern of ecDNA contributes to poor outcomes for patients with cancer.
Influence of the flow on the anchoring of nematic liquid crystals on a Langmuir-Blodgett monolayer studied by optical second-harmonic generation
Creators: name: Fazio, Valentina S. U.
name: Komitov, Lachezar
name: Radüge, Christian
name: Lagerwall, Sven T.
name: Motschmann, Hubert
Publisher: name: arXiv
Year: 2000
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: The influence of capillary flow on the alignment of the nematic liquid crystal MBBA on fatty acid Langmuir-Blodgett monolayers was studied by optical second-harmonic generation. The surface dipole sensitivity of the technique allows probing the orientation of the first liquid crystal monolayer in the presence of the liquid crystal bulk. It was found that capillary flow causes the first monolayer of liquid crystal molecules in contact with the fatty acid monolayer to be oriented in the flow direction with a large pretilt (78 degrees), resulting in a quasi-planar alignment with splay-bend deformation of the nematic director in the bulk. itself is affected by the flow. The quasi-planar flow-induced alignment was found to be metastable. Once the flow ceases, circular domains of homeotropic orientation nucleate in the sample and expand until the whole sample becomes homeotropic. This relaxation process from flow-induced quasi-planar to surface-induced homeotropic alignment was also monitored by SHG. It was found that in the homeotropic state the first nematic layer presents a pretilt of 38 degrees almost isotropically distributed in the plane of the cell, with a slight preference for the direction of the previous flow.
description: LaTeX2e article, 11 figures, 17 EPS files, submitted
Additional file 1: of Increasing gaps in health inequalities related to non-communicable diseases in South Australia; implications towards behavioural risk factor surveillance systems to provide evidence for action
Creators: name: Campostrini, Stefano
name: Grande, Eleonora Dal
name: Taylor, Anne
Publisher: name: figshare
Year: 2019
Subjects: subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Table S1. Total sample size and median response rates, 2002 to 2015. Note: Response rates (RR1) were calculated from the final dispositions of the telephone numbers using the American Association for Public Opinion Research (AAPOR) [18] standard definitions. (DOCX 12 kb)
Coulomb Drag between Quantum Wires
Creators: name: Klesse, Rochus
name: Stern, Ady
Publisher: name: arXiv
Year: 1999
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We study Coulomb drag in a pair of parallel one-dimensional electron systems within the framework of the Tomanaga-Luttinger model. We find that Coulomb coupling has a much stronger effect on one dimensional wires than on two-dimensional layers: At zero temperature the trans-resistivity {\em diverges}, due to the formation of locked charge density waves. At temperature well above a cross-over temperature $T^*$ the trans-resistivity follows a power law $ρ\propto T^x$, where the interaction-strength dependent exponent $x$ is determined by the Luttinger Liquid parameter $K_{c-}$ of the relative charge mode. At temperature below $T^*$ relative charge displacements are enabled by solitonic excitations, reflected by an exponential temperature dependence. The cross-over temperature $T^*$ depends sensitively on the wire width, inter-wire distance, Fermi wavelength and the effective Bohr radius. For wire distances $\bar{d} \gg k_F^{-1}$ it is exponentially suppressed with $T/E_F \sim \exp[ - \bar{d} k_F / (1-K_{c-}) ]$. The behavior changes drastically if each of the two wires develop spin gaps. In this case we find that the trans-resistivity {\em vanishes} at zero temperature. We discuss our results in view of possible experimental realizations in GaAs-AlGaAs semiconductor structures.
description: 16 pages, 3 figures, revTeX
Brief increases in corticosterone affect morphology, stress responses, and telomere length, but not post-fledging movements, in a wild songbird
Creators: name: Pegan, Teresa M.
name: Winkler, David W.
name: Haussmann, Mark F.
name: Vitousek, Maren N.
Publisher: name: arXiv
Year: 2018
Subjects: subject: Tissues and Organs (q-bio.TO)
subject: FOS: Biological sciences

description: Organisms are frequently exposed to challenges during development, such as poor weather and food shortage. Such challenges can initiate the hormonal stress response, which involves secretion of glucocorticoids. Although the hormonal stress response helps organisms deal with challenges, long-term exposure to high levels of glucocorticoids can have morphological, behavioral, and physiological consequences, especially during development. Glucocorticoids are also associated with reduced survival and telomere shortening. To investigate whether brief, acute exposures to glucocorticoids can also produce these phenotypic effects in free-living birds, we exposed wild tree swallow (Tachycineta bicolor) nestlings to a brief exogenous dose of cort once per day for five days and then measured their morphology, baseline and stress-induced corticosterone levels, and telomere length. We also deployed radio tags on a subset of nestlings, which allowed us to determine the age at which tagged nestlings left the nest (fledged) and their pattern of presence and absence at the natal site during the post-breeding period. Corticosterone-treated nestlings had lower mass, higher baseline and stress-induced corticosterone, and reduced telomeres; other metrics of morphology were affected weakly or not at all. Our treatment resulted in no significant effect on survival to fledging, fledge age, or age at first departure from the natal site, and we found no negative effect of corticosterone on inter-annual return rate. These results show that brief acute corticosterone exposure during development can have measurable effects on phenotype in free-living tree swallows. Corticosterone may therefore mediate correlations between rearing environment and phenotype in developing organisms, even in the absence of prolonged stressors.
description: 35 pages, 4 figures, 1 appendix
Chelone glabra Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Magnoliophyta
Magnoliopsida
Lamiales
Scrophulariaceae
Chelone
Chelone glabra

description: Chelone glabra Linnaeus, Species Plantarum 2: 611. 1753.
"Habitat in Virginia, Canada." RCN: 4419.
 Lectotype (Reveal & al. in Huntia 7: 220. 1987): Kalm, Herb. Linn. No. 765.1 (LINN; iso- UPS).
 Generitype of Chelone Linnaeus (vide Pennell in Proc. Acad. Nat. Sci. Philadelphia 82: 20. 1930).
 Current name:  Chelone glabra  L. (Scrophulariaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part C), pp. 370-473 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 409, DOI: 10.5281/zenodo.291971
Trends of information backflow in disordered spin chains
Creators: name: Roy, Sudipto Singha
name: Mishra, Utkarsh
name: Rakshit, Debraj
Publisher: name: arXiv
Year: 2018
Subjects: subject: Quantum Physics (quant-ph)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We investigate the trends of information backflow associated with the dynamics of a sub-part of a disordered spin-1/2 transverse field Heisenberg chain for different regimes of the Hamiltonian. Towards this aim, the decay profile of bipartite entanglement shared between a probe-qubit and a system-qubit (sub-part) of the chain is monitored in time. A clear shift in the trends of the decay profiles of the bipartite entanglement from monotonic in the low-disorder limit to non-monotonic in the moderately large disorder limit occurs due to strong information backflow from the environment (complementary-part) to the system-qubit. A connection between environmental interruption caused by the information backflow and the disorder strength is established by examining the entanglement revival frequencies. The growth patterns of the revival frequencies in the localized phase play an instrumental role to effectively distinguish an interacting system (many-body localized) from its non-interacting (Anderson localized) counterpart.
description: 7 pages, 4 figures, close to the published version
Supplementary document for Multiband and angular shaping of infrared radiation in 1D plasmonic gratings - 5691734.pdf
Creators: name: Benlyas, Rihab
name: Shimizu, Makoto
name: Otomo, Keiya
name: Liu, Zhen
name: Yugami, Hiroo
Publisher: name: Optica Publishing Group
Year: 2022
Subjects: Uncategorized

description: Suuplementary document
Two-dimensional excitons in monolayer transition metal dichalcogenides from simple models and variational calculations
Creators: name: Zhang, Jian-zhong
name: Ma, Jin-zhong
Publisher: name: arXiv
Year: 2018
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Exciton spectra of monolayer transition metal dichalcogenides (TMDs) in various dielectric environments are studied. The screened hydrogen model (SHM) [Phys. Rev. Lett. 116, 056401 (2016)] is examined by comparing its exciton spectra with the radial equation (RE) solutions. While the SHM is found to describe the nonhydrogenic exciton Rydberg series reasonably well, it fails to account for the linear decrease of the exciton energy with the orbital quantum number $m$. The exciton Bohr orbit shrinks as $\lvert m\rvert$ becomes larger resulting in increased strength of the electron-hole interaction and a decrease of the exciton energy. The exciton effective radius expression of the SHM can characterize the exciton radius's dependence on $n$, but it cannot properly describe the exciton radius's dependence on $m$, which is the cause of the SHM's poor description of the exciton energy's $m$-dependence. For monolayer WS$_2$ on the SiO$_2$ substrate, our calculated $s$ exciton Rydberg series agrees closely with that measured by optical reflection spectroscopy [Phys. Rev. Lett. 113, 076802 (2014)], while the calculated $p$ excitons offer an explanation for the two broad features of a two-photon absorption spectrum [Nature 513, 214 (2014)]. Our calculated exciton energies for monolayer TMDs in various dielectric environments compare favourably with experimental data. Variational wave functions are obtained for a number of strongly bound exciton states and further used to study the Stark effects in monolayer TMDs, an analytical expression being deduced which yields a redshift of the ground state energy to a good accuracy. The numerical solution of the RE combined with the variational method provides a simple and effective approach for the study of excitons in monolayer TMDs.
description: 27 pages, 11 figures
Complex Matrix Models and Statistics of Branched Coverings of 2D Surfaces
Creators: name: Kostov, Ivan K.
name: Staudacher, Matthias
name: Wynter, Thomas
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We present a complex matrix gauge model defined on an arbitrary two-dimensional orientable lattice. We rewrite the model's partition function in terms of a sum over representations of the group U(N). The model solves the general combinatorial problem of counting branched covers of orientable Riemann surfaces with any given, fixed branch point structure. We then define an appropriate continuum limit allowing the branch points to freely float over the surface. The simplest such limit reproduces two-dimensional chiral U(N) Yang-Mills theory and its string description due to Gross and Taylor.
description: 21 pages, 2 figures, TeX, harvmac.tex, epsf.tex, TeX "big"
Penstemon hirsutus Willd.
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Lamiales
Plantaginaceae
Penstemon
Penstemon hirsutus

description: Chelone hirsuta Linnaeus, Species Plantarum 2: 611. 1753, nom. cons.
"Habitat in Virginia." RCN: 4421.
 Conserved type (Barrie & Reveal in Taxon 44: 637. 1995): U.S.A. Maryland, Montgomery County, along River Road 0.9 miles west of the junction of West Willard Road, 9 Jun 1995, J.L. Reveal 7413 (BM; iso- MARY etc.).
 Current name:  Penstemon hirsutus  (L.) Willd. (Scrophulariaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part C), pp. 370-473 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 409, DOI: 10.5281/zenodo.291971
An improved cosmological bound on the tau-neutrino mass
Creators: name: Dolgov, A. D.
name: Pastor, S.
name: Valle, J. W. F.
Publisher: name: arXiv
Year: 1996
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Astrophysics (astro-ph)
subject: FOS: Physical sciences

description: We consider the influence of non-equilibrium electronic neutrinos (and anti-neutrinos) on the neutron-to-proton ratio. These neutrinos would come from massive $ν_τ$ annihilations $\bar ν_τν_τ\rightarrow \bar ν_e ν_e$. For sufficiently large $ν_τ$ masses this new effect would strongly enhance the (n/p)-ratio, leading to a very stringent bound on the $ν_τ$ mass, even adopting a rather weak upper bound on the effective number on neutrino species during nucleosynthesis.
description: 10 pages, LaTex file + 1 figure compressed using uufiles
Generalized quantum mechanics of nonabelian gauge theories
Creators: name: Whelan, John T.
Publisher: name: arXiv
Year: 1995
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Hartle's generalized quantum mechanics in the sum-over-histories formalism is used to describe a nonabelian gauge theory. Predictions are made for certain alternatives, with particular attention given to coarse-grainings involving the constraint. In this way, the theory is compared to other quantum-mechanical descriptions of gauge theories in which the constraints are imposed by hand. The vanishing of the momentum space constraint is seen to hold, both through a simple formal argument and via a more careful description of the Lorentzian path integral as defined on a spacetime lattice. (Incidentally, the treatment of the time slicing in the path integral may be of general technical interest.) The configuration space realization of the constraint is shown to behave in a more complicated fashion. For some coarse grainings, we recover the known result from an abelian theory, that coarse grainings by values of the constraint either predict its vanishing or fail to decohere. However, sets of alternatives defined in terms of a more complicated quantity in the abelian case are exhibited where definite predictions can be made which disagree with the assumption that the constraints vanish. Finally, the configuration space sum-over-histories theory is exhibited in a manifestly Lorentz-invariant formulation.
description: 54 pages, revtex, two PostScript figures included as a (8kB) uuencoded gzipped tar file. (Some corrections and format changes in preparation for submission to journal; figures now included as reasonably-sized (10-15kB) PostScript files)
Low energy dynamics of the one dimensional multichannel Kondo-Heisenberg Lattice
Creators: name: Andrei, N.
name: Orignac, E.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We determine exactly the fixed point Hamiltonian of the one dimensional multichannel Kondo-Heisenberg lattice model for any number of channels N>=2. An anomalous singlet with non trivial internal dynamics is generated. We compute the correlation functions of the various conventional and unconventional order parameters of the system and find that for N<=4 the composite order parameter induce the dominant instabilities.
description: 4 pages, no figures, RevTeX, corrected a few typos and a mistake in one of the exponents
Additional file 2: of An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar
Creators: name: Grubaugh, Nathan
name: Gangavarapu, Karthik
name: Quick, Joshua
name: Matteson, Nathaniel
name: Jesus, Jaqueline
name: Main, Bradley
name: Tan, Amanda
name: Paul, Lauren
name: Brackney, Doug
name: Saran Grewal
name: Gurfield, Nikos
name: Rompay, Koen Van
name: Isern, Sharon
name: Michael, Scott
name: Lark Coffey
name: Loman, Nicholas
name: Andersen, Kristian
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Pharmacology
subject: Evolutionary Biology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: iSNV frequencies calculated using pseudo replicates (Figure S1.), sensitivity of measuring intrahost diversity at 5% (Figure S2.), metagenomic sequencing coverage depth (Figure S3.), and validation of iVar for intrahost single-nucleotide variant calling (Figure S4.), consensus calling (Figure S5.), and trimming (Figure S6.). (PDF 7109 kb)
Multiple Production of MSSM Neutral Higgs Bosons at High--Energy $e^+e^-$ Colliders
Creators: name: Djouadi, A.
name: Haber, H. E.
name: Zerwas, P. M.
Publisher: name: arXiv
Year: 1996
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The cross sections for the multiple production of the lightest neutral Higgs boson at high--energy $e^+ e^-$ colliders are presented in the framework of the Minimal Supersymmetric extension of the Standard Model (MSSM). We consider production through Higgs--strahlung, associated production of the scalar and the pseudoscalar bosons, and the fusion mechanisms for which we will use the effective longitudinal vector--boson approximation. These cross sections allow one to determine trilinear Higgs couplings $λ_{Hhh}$ and $λ_{hhh}$, which are theoretically predicted by the Higgs potential.
description: 15 pages in Latex, including 5 figures, uses psfig.sty and epsfig.sty. The complete *.ps file is also available via WWW at http://itpaxp1.physik.uni-karlsruhe.de/prep/prep.html
One pion events by atmospheric neutrinos: A three flavor analysis
Creators: name: Balaji, K. R. S.
name: Rajasekaran, G.
name: Sankar, S. Uma
Publisher: name: arXiv
Year: 1998
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We study the one-pion events produced via neutral current (NC) and charged current (CC) interactions by the atmospheric neutrinos. We analyze the ratios of these events in the framework of oscillations between three neutrino flavors. The ratios of the CC events induced by $ν_e$ to that of the NC events and a similar ratio defined with $ν_μ$ help us in distinguishing the different regions of the neutrino parameter space.
description: 14 pages, 4 figures (separate postscript files)
The Giant Radio Array for Neutrino Detection (GRAND): Science and Design
Creators: name: GRAND Collaboration
name: Alvarez-Muniz, Jaime
name: Batista, Rafael Alves
name: V., Aswathi Balagopal
name: Bolmont, Julien
name: Bustamante, Mauricio
name: Carvalho, Washington R.
name: Charrier, Didier
name: Cognard, Ismael
name: Decoene, Valentin
name: Denton, Peter B.
name: De Jong, Sijbrand J.
name: De Vries, Krijn D.
name: Engel, Ralph
name: Fang, Ke
name: Finley, Chad
name: Gabici, Stefano
name: Gou, QuanBu
name: Gu, Junhua
name: Guépin, Claire
name: Hu, Hongbo
name: Huang, Yan
name: Kotera, Kumiko
name: Coz, Sandra Le
name: Lenain, Jean-Philippe
name: Lu, Guo-Liang
name: Martineau-Huynh, Olivier
name: Mostafá, Miguel
name: Mottez, Fabrice
name: Murase, Kohta
name: Niess, Valentin
name: Oikonomou, Foteini
name: Pierog, Tanguy
name: Qian, Xiangli
name: Qin, Bo
name: Ran, Duan
name: Renault-Tinacci, Nicolas
name: Roth, Markus
name: Schröder, Frank G.
name: Schüssler, Fabian
name: Tasse, Cyril
name: Timmermans, Charles
name: Tueros, Matias
name: Wu, Xiangping
name: Zarka, Philippe
name: Zech, Andreas
name: Zhang, B. Theodore
name: Zhang, Jianli
name: Zhang, Yi
name: Zheng, Qian
name: Zilles, Anne
Publisher: name: arXiv
Year: 2018
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: High Energy Physics - Experiment (hep-ex)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The Giant Radio Array for Neutrino Detection (GRAND) is a planned large-scale observatory of ultra-high-energy (UHE) cosmic particles, with energies exceeding 10^8 GeV. Its goal is to solve the long-standing mystery of the origin of UHE cosmic rays. To do this, GRAND will detect an unprecedented number of UHE cosmic rays and search for the undiscovered UHE neutrinos and gamma rays associated to them with unmatched sensitivity. GRAND will use large arrays of antennas to detect the radio emission coming from extensive air showers initiated by UHE particles in the atmosphere. Its design is modular: 20 separate, independent sub-arrays, each of 10 000 radio antennas deployed over 10 000 km^2. A staged construction plan will validate key detection techniques while achieving important science goals early. Here we present the science goals, detection strategy, preliminary design, performance goals, and construction plans for GRAND.
description: 45 pages, 34 figures. Matches published version
Supplementary document for Intensity-surged and Bandwidth-extended Terahertz Radiation in Two-foci Cascading Plasmas - 5877899.pdf
Creators: name: Zhang, Yizhu
name: Jiao, Zhi-Hong
name: He, Tao
name: Zhao, J. J.
name: Fan, Xingwang
name: Chen, Taotao
name: Wang, Guoli
name: YAN, T.-M.
name: Zhou, Xiaoxin
name: JIANG, Y. H.
Publisher: name: Optica Publishing Group
Year: 2022
Subjects: Uncategorized

description: Supporting Material
Additional file 3: of An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar
Creators: name: Grubaugh, Nathan
name: Gangavarapu, Karthik
name: Quick, Joshua
name: Matteson, Nathaniel
name: Jesus, Jaqueline
name: Main, Bradley
name: Tan, Amanda
name: Paul, Lauren
name: Brackney, Doug
name: Saran Grewal
name: Gurfield, Nikos
name: Rompay, Koen Van
name: Isern, Sharon
name: Michael, Scott
name: Lark Coffey
name: Loman, Nicholas
name: Andersen, Kristian
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Pharmacology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: 60506 Virology

description: Laboratory protocol for generating sequencing libraries for measuring intrahost virus genetic diversity. (PDF 198 kb)
Charged Gauss-Bonnet black holes with curvature induced scalarization in the extended scalar-tensor theories
Creators: name: Doneva, Daniela D.
name: Kiorpelidi, Stella
name: Nedkova, Petya G.
name: Papantonopoulos, Eleftherios
name: Yazadjiev, Stoytcho S.
Publisher: name: arXiv
Year: 2018
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Recently new scalarized black hole solutions were constructed in the extended scalar-tensor-Gauss-Bonnet gravity, where the scalar field is sourced by the curvature of the spacetime via the Gauss-Bonnet invariant. A natural extension of these results is to consider the case of nonzero black hole charge. In addition we have explored a large set of coupling functions between the Gauss-Bonnet invariant and the scalar field, that was not done until now even in the uncharged case, in order to understand better the behavior of the solutions and the deviations from pure general relativity. The results show that in the case of nonzero black hole charge two bifurcation points can exist - one at larger masses where the scalarized solutions bifurcated from the Reissner-Nordstrom one, and one at smaller masses where the scalar charge of the solutions decreases again to zero and the branch merges again with the GR one. All of the constructed scalarized branches do not reach an extremal limit. We have examined the entropy of the black holes with nontrivial scalar field and it turns out, that similar to the uncharged case, the fundamental branch which possesses scalar field with no nodes is thermodynamically favorable over the Reissner-Nordstrom one for the considered coupling functions, while the rest of the branches possessing scalar field with one or more zeros have lower entropy compared to the GR case and they are supposed to be unstable.
description: 20 pages, 7 figures
Chelone obliqua Linnaeus 1767
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Magnoliophyta
Magnoliopsida
Lamiales
Scrophulariaceae
Chelone
Chelone obliqua

description: Chelone obliqua Linnaeus, Systema Naturae, ed. 12, 2: 408. 1767.
RCN: 4420.
 Lectotype (designated here by Sutton): [icon] " Chelone foliis ovatolanceolatis serratis floribus rubris " in Miller, Fig. Pl. Gard. Dict. 1: 62, t. 93. 1756.
 Current name:  Chelone obliqua  L. (Scrophulariaceae).
 Note: Pennell (in Monogr. Acad. Nat. Sci. Philadelphia 1: 182. 1935) says this is "based primarily upon a plant described in Miller’s gardeners’ Dictionary, the type of which has been seen in Herb. British Museum (Natural History) at London". However, this material was not seen by Linnaeus and is not original material for the name.
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part C), pp. 370-473 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 409, DOI: 10.5281/zenodo.291971
Additional file 1 of Neuromuscular junction pathology is correlated with differential motor unit vulnerability in spinal and bulbar muscular atrophy
Creators: name: Molotsky, Elana
name: Liu, Yuhong
name: Lieberman, Andrew P.
name: Merry, Diane E.
Publisher: name: figshare
Year: 2022
Subjects: subject: Biophysics
subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Neuroscience
subject: Physiology
subject: Computational Biology
subject: Cardiology

description: Additional file1. Supplementary Methods. Supplementary Figs. 1–9. Supplementary Tables 1 and 2.
Penstemon laevigatus Sol.
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Lamiales
Plantaginaceae
Penstemon
Penstemon laevigatus

description: Chelone penstemon Linnaeus, Species Plantarum 2: 612. 1753.
"Habitat in Virginia." RCN: 4420.
 Neotype (Crosswhite in Taxon 17: 49-50. 1968): Herb. Linn. No. 765.2 (LINN).
 Current name:  Penstemon laevigatus  Sol. (Scrophulariaceae).
 Note: In the absence of any original material, Crosswhite’s designation of 765.2 (LINN) as lectotype is accepted as correctable to neotype (Art. 9.8).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part C), pp. 370-473 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 409, DOI: 10.5281/zenodo.291971
N=1 Superconformal Symmetry in Four Dimensions
Creators: name: Park, Jeong-Hyuck
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: N=1, d=4 superconformal group is studied and its representations are discussed. Under superconformal transformations, left invariant derivatives and some class of superfields, including supercurrents, are shown to follow these representations. In other words, these superfields are quasi-primary by analogy with two dimensional conformal field theory. Based on these results, we find the general forms of the two-point and the three-point correlation functions of the quasi-primary superfields in a group theoretical way. In particular, we show that the two-point function of the supercurrent is unique up to a constant and the general form of the three-point function of the supercurrent has two free parameters.
description: 32 pages, no figure, LaTeX. New references added, A result corrected
Localizations of the category of $A_\infty$ categories and internal Homs
Creators: name: Canonaco, Alberto
name: Ornaghi, Mattia
name: Stellari, Paolo
Publisher: name: arXiv
Year: 2018
Subjects: subject: Algebraic Geometry (math.AG)
subject: Category Theory (math.CT)
subject: FOS: Mathematics

description: We prove that the localizations of the categories of dg categories, of cohomologically unital and strictly unital $A_\infty$ categories with respect to the corresponding classes of quasi-equivalences are all equivalent. Moreover we show that the last two localizations are equivalent to the corresponding quotients by the relation of being isomorphic in the cohomology of the $A_\infty$ category of $A_\infty$ functors. As an application we give a complete proof of a claim by Kontsevich stating that the category of internal Homs for two dg categories can be described as the category of strictly unital $A_\infty$ functors between them.
description: 25 pages. Final version
Chenopodium album Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Caryophyllales
Amaranthaceae
Chenopodium
Chenopodium album

description: Chenopodium album Linnaeus, Species Plantarum 1: 219. 1753.
"Habitat in agris Europae." RCN: 1804.
 Lectotype (Brenan in Turrill & Milne-Redhead, Fl. Trop. E. Africa, Chenopodiaceae: 6. 1954): Herb. Linn. No. 313.8 (LINN).
 Generitype of Chenopodium Linnaeus (vide Hitchcock, Prop. Brit. Bot.: 137. 1929).
 Current name:  Chenopodium album  L. (Chenopodiaceae).
 Note: Chenopodium rubrum L. was treated as the generitype of Chenopodium by Britton & Brown, Ill. Fl. N. U. S., ed. 2, 2: 9. 1913 (see McNeill & al. in Taxon 36: 365. 1987). However, under Art. 10.5, Ex. 7 (a voted example) of the Vienna Code, this is a type choice made under the American Code and is to be replaced under Art. 10.5b by Hitchcock’s choice (Prop. Brit. Bot.: 137. 1929) of C. album.
 Aellen (in Verb. Naturf. Ges. Basel 51(2): 43-65. 1930) discussed the name in some detail and illustrated (p. 50) sheet 313.8 (LINN), but did not appear to choose it explicitly as the type. See notes on the varietal identity of the type by Hansen & Pedersen (in Bot. Tidsskr. 63: 226. 1968).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part C), pp. 370-473 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on pages 409-410, DOI: 10.5281/zenodo.291971
Chenopodium ambrosioides Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Caryophyllales
Amaranthaceae
Chenopodium
Chenopodium ambrosioides

description: Chenopodium ambrosioides Linnaeus, Species Plantarum 1: 219. 1753.
"Habitat in Mexico, Lusitania." RCN: 1807.
 Lectotype (Brenan in Turrill & Milne-Redhead, Fl. Trop. E. Africa, Chenopodiaceae: 10. 1954): Herb. Linn. No. 313.13 (LINN).
 Current name:  Chenopodium ambrosioides  L. (Chenopodiaceae).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part C), pp. 370-473 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 410, DOI: 10.5281/zenodo.291971
Additional file 2: of Efficacy and safety of administering oral misoprostol by titration compared to vaginal misoprostol and dinoprostone for cervical ripening and induction of labour: study protocol for a randomised clinical trial
Creators: name: O. Lapuente-Ocamica
name: L. Ugarte
name: A. Lopez-Picado
name: F. Sanchez-Refoyo
name: IĂąaki Lasa
name: O. Echevarria
name: J. ĂLvarez-Sala
name: A. FariĂąas
name: I. Bilbao
name: L. Barbero
name: J. Vicarregui
name: R. Hernanz Chaves
name: D. Paz Corral
name: J. Lopez-Lopez
Publisher: name: figshare
Year: 2019
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology

description: SPIRIT checklist. (DOC 123 kb)
Semiclassical Solution of the Quantum Hydrodynamic Equation for Trapped Bose-condensed Gas in the l=0 Case
Creators: name: Tasnadi, Tamas
Publisher: name: arXiv
Year: 2000
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: In this paper the quantum hydrodynamic equation describing the collective, low energy excitations of a dilute atomic Bose gas in a given trapping potential is investigated with the JWKB semiclassical method. In the case of spherically symmetric harmonic confining potential a good agreement is shown between the semiclassical and the exact energy eigenvalues as well as wave functions. It is also demonstrated that for larger quantum numbers the calculation of the semiclassical wave function is numerically more stable than the exact polynomial with large alternating coefficients.
description: 12 pages, 7 figures
Why do people use portable air purifiers? Evidence from occupant surveys and air quality monitoring in homes in three European cities
Creators: name: Cooper, Elizabeth
name: Wang, Yan
name: Stamp, Samuel
name: Nijsen, Tamara
name: de Graaf, Pascal
name: Hofman, Jelle
name: Inki, Tiina
name: Driessen, Rufus
name: Liebmann, Joerg
name: Geven, Inge T. M.
name: Vervoort, Koen
name: La Manna, Valerio Panzica
name: Valster, Sanne
name: de Wolf, Pauline
name: Peltonen, Silja
name: Burman, Esfandiar
name: Salminen, Aki
name: van Galen, Roger
name: Mumovic, Dejan
Publisher: name: Taylor & Francis
Year: 2021
Subjects: subject: Physical Sciences not elsewhere classified
subject: Environmental Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: One of the most widely available technologies to clean the air in homes of particulate matter of less than 2.5 µm in diameter (PM2.5), known to have negative health impacts, are portable home air purifiers (HAPs). This paper presents research which (1) explored the effectiveness of HAPs in real-world conditions in 57 homes in three European cities; (2) examined if HAPs affect users’ perceptions of the indoor air quality (IAQ) at home; and (3) considered the motivations for occupants’ operation of HAPs. Results from this study found that PM2.5 concentrations in bedrooms were reduced by 45% to 69%; perceptions of IAQ were not correlated with measured high PM2.5 levels; occupants reported the HAPs to have a ‘cooling’ effect, which may explain why the predominant driver of HAP use was thermal comfort, rather than IAQ, in all three cities. The latter finding was supported by a statistically significant increase in the probability of HAP use with increasing indoor temperatures. If the operation of HAPs can be managed, or fully automated, to reflect indoor air pollution levels rather than thermal conditions, better pollutant reduction would be feasible and their use to reduce PM2.5 may help mitigate the negative health effects of exposure whilst at home.
Improved Spin Dynamics Simulations of Magnetic Excitations
Creators: name: Landau, D. P.
name: Tsai, Shan-Ho
name: Krech, M.
name: Bunker, Alex
Publisher: name: arXiv
Year: 1999
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: FOS: Physical sciences

description: Using Suzuki-Trotter decompositions of exponential operators we describe new algorithms for the numerical integration of the equations of motion for classical spin systems. These techniques conserve spin length exactly and, in special cases, also conserve the energy and maintain time reversibility. We investigate integration schemes of up to eighth order and show that these new algorithms can be used with much larger time steps than a well established predictor-corrector method. These methods may lead to a substantial speedup of spin dynamics simulations, however, the choice of which order method to use is not always straightforward.
description: J. Mod. Phys. C (in press)
On certain cosmological relics of the early string dynamics
Creators: name: Batakis, Nikolaos A
Publisher: name: arXiv
Year: 1995
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: The tracing of cosmological relics from the early string dynamics may enhance the theory and provide new perspectives on the major cosmological problems. This point is illustrated in a leading-order Bianchi-type $VII_0$ string background, wherein spatial isotropy can be claimed as such a relic. A much finer one, descending from a premordial gravitational wave, could be retrieved from its imprint on the small-scale structure of the cosmic microwave background. In spite of the absence of conventional inflation, there is no horizon problem thanks to the presence of an equally fundamental mixmaster dynamics. Implications and certain new perspectives which thus arise for the more general problem of cosmological mixing are briefly discussed.
description: Latex file, 11 pages, 0 figures. Re-titled revision of "Mixing towards isotropization..." to appear in Class. Quantum Gravity
Self-dual Chern-Simons Solitons in the Planar Ferromagnet
Creators: name: Kim, Yoonbai
name: Oh, Phillial
name: Rim, Chaiho
Publisher: name: arXiv
Year: 1997
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We consider a uniaxial planar ferromagnet coupled minimally to an Abelian Chern-Simons gauge field and study self-dual solitons which saturate the Bogomol'nyi bound. We find a rich structure of rotationally symmetric static soliton solutions for various uniform background charge densities. For a given ferromagnet material, the properties of these solitons are controlled only by the external magnetic field and the background charge.
description: 11 pages of LaTeX, Three figures of pslatex files are included
title: ADCO, Boursier de Cîteaux : comptes (1489-1493) (11 H 1166), f. 00334
Creators: name: de la Côte-d'Or, Archives départementales
name: Archives Départementales De La Côte-D'Or
name: Petot, Frédérique
name: Projet CBMA
name: CBMA/CG21/F.PETOT/2019
name: Petot, Frédéric
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020
Subjects: subject: Corpus Burgundiae Medii Aevi
subject: Chartes de la Bourgogne du Moyen Âge
subject: comptes
subject: LaMOP
subject: Laboratoire de Médiévistique Occidentale de Paris

description: Boursier de Cîteaux : comptes (1489-1493), Archives départementales de la Côte-d'Or, (11 H 1166). Numérisation en mode image.
description: Relation: http://www.cbma-project.eu/
description: Bibliographic citation: Boursier de Cîteaux : comptes (1489-1493), Archives départementales de la Côte-d'Or, (11 H 1166), f. 00334, in Projet CBMA - Corpus Burgundiae Medii Aevi \[Ressource en ligne\], https:// manuscrits.cbma-project.eu/
description: Provenance: abbaye de Cîteaux
description: Provenance: http://www.wikidata.org/entity/Q843261
description: Provenance: https://www.geonames.org/3024876
description: Provenance: http://www.idref.fr/030974844/id
description: Provenance: https://catalogue.bnf.fr/ark:/12148/cb12228351v
Chenopodium ambrosioides Linnaeus 1753
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Caryophyllales
Amaranthaceae
Chenopodium
Chenopodium ambrosioides

description: Chenopodium anthelminticum Linnaeus, Species Plantarum 1: 220. 1753.
"Habitat in Pensylvania, Bonaria." RCN: 1809.
Type not designated.
Original material: Herb. Linn. No. 313.15 (LINN); [icon] in Dillenius, Hort. Eltham. 1: 77, t. 66, f. 76. 1732 - Voucher: Herb. Sherard No. 592 (OXF).
 Current name:  Chenopodium ambrosioides  L. (Chenopodiaceae).
 Note: Kellogg (in Howard, Fl. Lesser Antilles 4: 140. 1988) indicated 313.15 and 313.16 (LINN) as types but as they are evidently not part of a single gathering, Art. 9.15 does not apply.
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part C), pp. 370-473 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 410, DOI: 10.5281/zenodo.291971
Impact of nanoparticle surface charge and phosphate on the uptake of coexisting cerium oxide nanoparticles and cadmium by soybean (Glycine max. (L.) merr.)
Creators: name: Sharifan, Hamidreza
name: Wang, Xiaoxuan
name: Ma, Xingmao
Publisher: name: Taylor & Francis
Year: 2019
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Biological Sciences not elsewhere classified
subject: Plant Biology

description: Engineered nanoparticles (ENPs) often interact closely with coexisting environmental pollutants; however, the effect of their surface properties on such interactions in a plant system has not been examined. This study investigated the roles of ENP surface charge and growth media chemistry on the mutual effects of cerium oxide nanoparticles (CeO2NPs) and cadmium (Cd) on their plant uptake and accumulation in a hydroponic system. Soybean seedlings were exposed to five nanoparticle/Cd treatments including: 100 mg L−1 CeO2NPs(+); 100 mg L−1 CeO2NPs(−); 100 mg L−1 CeO2NPs(+) + 1 mg L−1 Cd; 100 mg L−1 CeO2NPs(−) + 1 mg L−1 Cd; and 1 mg L−1 Cd only, in the presence or absence of 15 mg L−1 phosphorous in the form of phosphate. After 4 days of exposure, concentrations of Cd and Ce in plant tissues were quantified by inductively coupled plasma-mass spectrometry. Roots exposed to CeO2NPs(+) contained 87% higher Ce than plants exposed to CeO2NPs(−). Phosphate significantly increased the root concentration of Ce by 61% and 66% exposed to CeO2NPs(+) and CeO2NPs(−), respectively. The mutual effect of CeO2NPs and Cd was also affected by phosphate, and the net effect of phosphate depended upon the surface charge of CeO2NPs.
Near-100 % two-photon-like coincidence-visibility dip with classical light and the role of complementarity
Creators: name: Sadana, Simanraj
name: Ghosh, Debadrita
name: Joarder, Kaushik
name: Lakshmi, A. Naga
name: Sanders, Barry C.
name: Sinha, Urbasi
Publisher: name: arXiv
Year: 2018
Subjects: subject: Quantum Physics (quant-ph)
subject: Atomic Physics (physics.atom-ph)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: The Hong-Ou-Mandel effect is considered a signature of the quantumness of light, as the dip in coincidence probability using semi-classical theories has an upper bound of 50%. Here we show, theoretically and experimentally, that, with proper phase control of the signals, classical pulses can mimic a Hong-Ou-Mandel-like dip. We demonstrate a dip of 99.635 +/- 0.002% with classical microwave fields. Quantumness manifests in wave-particle complementarity of the two-photon state. We construct quantum and classical interferometers for the complementarity test and show that while the two-photon state shows wave-particle complementarity, the classical pulses do not.
description: Version to appear in Physical Review A