cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 13 of Novel induction of CD40 expression by tumor cells with RAS/RAF/PI3K pathway inhibition augments response to checkpoint blockade
Creators: name: Yan, Chi
name: Saleh, Nabil
name: Yang, Jinming
name: Nebhan, Caroline A.
name: Vilgelm, Anna E.
name: Reddy, E. Premkumar
name: Roland, Joseph T.
name: Johnson, Douglas B.
name: Chen, Sheau-Chiann
name: Shattuck-Brandt, Rebecca L.
name: Ayers, Gregory D.
name: Richmond, Ann
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Additional file 13: Supplementary Figure. 13. Intact adaptive immune system is required for rigosertib to inhibit melanoma tumor growth in vivo.
Phylogenetic Analysis of Staphylococcus aureus CC398 Reveals a Sub-Lineage Epidemiologically Associated with Infections in Horses
Creators: name: Abdelbary, Mohamed M. H.
name: Wittenberg, Anne
name: Cuny, Christiane
name: Layer, Franziska
name: Kurt, Kevin
name: Wieler, Lothar Heinz
name: Walther, Birgit
name: Skov, Robert
name: Larsen, Jesper
name: Hasman, Henrik
name: Fitzgerald, J. Ross
name: Smith, Tara C.
name: Wagenaar, J. A.
name: Pantosti, Annalisa
name: Hallin, Marie
name: Struelens, Marc J.
name: Edwards, Giles
name: Böse, R.
name: Nübel, Ulrich
name: Witte, Wolfgang
Publisher: name: Freie Universität Berlin
Year: 2014
Subjects: subject: 600 Technik, Medizin, angewandte Wissenschaften::630 Landwirtschaft

description: In the early 2000s, a particular MRSA clonal complex (CC398) was found mainly in pigs and pig farmers in Europe. Since then, CC398 has been detected among a wide variety of animal species worldwide. We investigated the population structure of CC398 through mutation discovery at 97 genetic housekeeping loci, which are distributed along the CC398 chromosome within 195 CC398 isolates, collected from various countries and host species, including humans. Most of the isolates in this collection were received from collaborating microbiologists, who had preserved them over years. We discovered 96 bi- allelic polymorphisms, and phylogenetic analyses revealed that an epidemic sub-clone within CC398 (dubbed 'clade (C)') has spread within and between equine hospitals, where it causes nosocomial infections in horses and colonises the personnel. While clade (C) was strongly associated with S. aureus from horses in veterinary-care settings (p = 2 × 10(-7)), it remained extremely rare among S. aureus isolates from human infections.
Emergent non-Fermi-liquid phenomena in multipolar quantum impurity systems
Creators: name: Patri, Adarsh S.
name: Khait, Ilia
name: Kim, Yong Baek
Publisher: name: arXiv
Year: 2019
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Discovery of novel spin-orbital entangled quantum ground states paves an important avenue for controllable quantum materials via unique couplings to the lattice and other external perturbations. In this work, motivated by recent experiments on cubic heavy fermion materials with multipolar local moments, we theoretically investigate strongly-interacting spin-orbital entangled quantum ground states in multipolar quantum impurity systems. Here itinerant electrons are interacting with the local moments carrying quadrupolar and octupolar moments, in contrast to the conventional Kondo problem with dipolar local moment. Using perturbative renormalization group methods, we uncover a number of non-Fermi liquid ground states, which are characterized by an absence of well-defined quasiparticles and singular power-law behaviours in physical properties. We show that the non-Fermi liquid states found here are outside the known categories of non-Fermi liquid states in the conventional multi-channel Kondo problem. This work lays a novel ground for the identification of unexpected non-Fermi liquid phases in many strongly spin-orbital-coupled quantum materials.
description: Published version: 7 pages, 16 pages Supplementary Information (including references)
Additional file 12 of Novel induction of CD40 expression by tumor cells with RAS/RAF/PI3K pathway inhibition augments response to checkpoint blockade
Creators: name: Yan, Chi
name: Saleh, Nabil
name: Yang, Jinming
name: Nebhan, Caroline A.
name: Vilgelm, Anna E.
name: Reddy, E. Premkumar
name: Roland, Joseph T.
name: Johnson, Douglas B.
name: Chen, Sheau-Chiann
name: Shattuck-Brandt, Rebecca L.
name: Ayers, Gregory D.
name: Richmond, Ann
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Additional file 12: Supplementary Figure. 12. CD40 ligand (CD40L) expression in tumor-infiltrating T cells.
Additional file 2 of Integrated interpretation of pXRF data on ancient nephrite artifacts excavated from Tomb No.1 in Yuehe Town, Henan Province, China
Creators: name: Chen, Dian
name: Yang, Yimin
name: Qiao, Baotong
name: Li, Jingpu
name: Luo, Wugan
Publisher: name: figshare
Year: 2022
Subjects: subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: Plant Biology

description: Additional file 2: Table S2. Portable XRF results of chemical composition of the nephrite artifacts from the Tomb No.1, Yuehe Town.
Regularizing properties of (non-Gaussian) transition semigroups in Hilbert spaces
Creators: name: Bignamini, D. A.
name: Ferrari, S.
Publisher: name: arXiv
Year: 2020
Subjects: subject: Analysis of PDEs (math.AP)
subject: Probability (math.PR)
subject: FOS: Mathematics
subject: 35R60, 60G15, 60H15

description: Let $\mathcal{X}$ be a separable Hilbert space with norm $\|\cdot\|$ and let $T>0$. Let $Q$ be a linear, self-adjoint, positive, trace class operator on $\mathcal{X}$, let $F:\mathcal{X}\rightarrow \mathcal{X}$ be a (smooth enough) function and let $W(t)$ be a $\mathcal{X}$-valued cylindrical Wiener process. For $α\in [0,1/2]$ we consider the operator $A:=-(1/2)Q^{2α-1}:Q^{1-2α}(\mathcal{X})\subseteq \mathcal{X}\rightarrow \mathcal{X}$. We are interested in the mild solution $X(t,x)$ of the semilinear stochastic partial differential equation \begin{gather*} \left\{\begin{array}{ll} dX(t,x)=\big(AX(t,x)+F(X(t,x))\big)dt+ Q^αdW(t), & t\in(0,T];\\ X(0,x)=x\in \mathcal{X}, \end{array}\right. \end{gather*} and in its associated transition semigroup \begin{align*} P(t)φ(x):=\mathbb{E}[φ(X(t,x))], \qquad φ\in B_b(\mathcal{X}),\ t\in[0,T],\ x\in \mathcal{X}; \end{align*} where $B_b(\mathcal{X})$ is the space of the bounded and Borel measurable functions. We will show that under suitable hypotheses on $Q$ and $F$, $P(t)$ enjoys regularizing properties, along a continuously embedded subspace of $\mathcal{X}$. More precisely there exists $K:=K(F,T)>0$ such that for every $φ\in B_b(\mathcal{X})$, $x\in \mathcal{X}$, $t\in(0,T]$ and $h\in Q^α(\mathcal{X})$ it holds \[|P(t)φ(x+h)-P(t)φ(x)|\leq Kt^{-1/2}\|Q^{-α}h\|.\]
Quenched Spin Tunneling and Diabolical Points in Magnetic Molecules: I. Symmetric Configurations
Creators: name: Garg, Anupam
Publisher: name: arXiv
Year: 2000
Subjects: subject: Condensed Matter (cond-mat)
subject: Mathematical Physics (math-ph)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: The perfect quenching of spin tunneling that has previously been discussed in terms of interfering instantons, and has recently been observed in the magnetic molecule \Fe8, is treated using a discrete phase integral (or Wentzel-Kramers-Brillouin) method. The simplest model Hamiltonian for the phenomenon leads to a Schrödinger equation that is a five-term recursion relation. This recursion relation is reflection-symmetric when the magnetic field applied to the molecule is along the hard magnetic axis. A completely general Herring formula for the tunnel splittings for all reflection-symmetric five-term recursion relations is obtained. Using connection formulas for a new type of turning point that may be described as lying "under the barrier", and which underlies the oscillations in the splitting as a function of magnetic field, this Herring formula is transformed into two other formulas that express the splittings in terms of a small number of action and action-like integrals. These latter formulas appear to be generally valid, even for problems where the recursion contains more than five terms. The results for the model Hamiltonian are compared with experiment, numerics, previous instanton based approaches, and the limiting case of no magnetic field.
description: Revtex; 4 ps figures
Tympanotonus fuscatus
Creators: name: Strong, Ellen E.
Publisher: name: Zenodo
Year: 2011
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Sorbeoconcha
Potamididae
Tympanotonus
Tympanotonus fuscatus

description: TYMPANOTONUS FUSCATUS (LINNÉ, 1758)
 Material examined
Atlantic Ocean: Africa: Guinea: Conakry Penninsula, Kaporo Port (USNM 858078).
 Description
Marginal fold S-shaped (Fig. 10D), terminating at posterior tip of sorting area; oesophageal aperture at tip of marginal fold recurved segment; sorting area rectangular with broadly rounded posterior margin; anterior sorting area modified into prominent concave flap; left margin of sorting area with slight bulge posteriorly bordering flap; accessory marginal fold extending from oesophageal aperture, around posterior margin of sorting area, intersecting long, slightly curving segment along sorting area left margin; sorting area pad present at left posterior end of sorting area; crescentic pads lacking; glandular pad large, elongate, flaring posteriorly with broadly rounded posterior end, extending far posterior to gastric shield; paired digestive gland ducts opening at left of glandular pad; crescentic ridge long, extending from oesophageal aperture, past digestive gland ducts, curving around posterior end of glandular pad, fusing to side of pad above caecum; deep, narrow caecum present opposite single caecal fold; accessory pads lacking; U-shaped fold present below style sac aperture (ss); style sac extremely long, extending into mantle roof; typhlosoles fusing short distance anteriorly from gastric chamber.
description: Published as part of Strong, Ellen E., 2011, More than a gut feeling: utility of midgut anatomy in phylogeny of the Cerithioidea (Mollusca: Caenogastropoda), pp. 585-630 in Zoological Journal of the Linnean Society 162 (3) on page 601, DOI: 10.1111/j.1096-3642.2010.00687.x, http://zenodo.org/record/5440617
Controlling Tissue Matrix Assembly of Human Mesenchymal Stem Cells toward Engineering Native-like Bone, Cartilage, and Osteochondral Grafts
Creators: Bhumiratana, Sarindr
Publisher: name: Columbia University
Year: 2012
Subjects: Biomedical engineering
Medicine
Biology

description: Medical complications caused by bone, cartilage, and osteochoondral defects present special challenges to tissue engineers. An ability to fabricate these tissues in vitro will eliminate clinical complications caused by current techniques used in graft reconstruction. These complications include long-term failure of synthetic grafts, inferior success of allografts, and complications from harvesting autografts. The successfully engineered grafts must exhibit biological and structural function similar to that of native tissue in order to withstand physiological conditions and integrate into surrounding tissues. In this dissertation, the ability to control tissue matrix assembly from a clinically relevant cell source, human mesenchymal stem cells, towards generating native-like tissue properties has been demonstrated. The investigational approach was crafted around three specific aims: controlling the matrix assembly of bone mineral (Aim 1), articular cartilage (Aim 2), and osteochondral tissue (Aim 3). As a result, the assembly of bone mineral structure was accomplished by regulating nucleation, mineral-binding protein deposition sites, and affinity for mineral binding. Native-like articular cartilage with physiologic form and function was created using a cell pellet compression technique, a process mimicking the native developmental mesenchymal cell condensation process. In addition, the key requirements to engineer osteochondral tissue with undifferentiated mesenchymal stem cells were established. A radically novel, imaging-compatible perfusion bioreactor was designed to enhance tissue integration and spatial regulation of supplements to direct stem cell differentiation into chondrogenic and osteogenic lineages and the formation of complete osteochondral constructs. Proof-of-concept experimentation was conducted in a large animal (pig) model of temporomandibular condyle reconstruction. Engineered bone demonstrated markedly better regeneration and remodeling of the TMJ and its integration with the surrounding tissues (bone and muscle) compared to the implantation of acellular scaffolds. The tissue engineering approaches developed in this dissertation form a basis for promising therapeutic approaches for treating bone, cartilage, and osteochondral defects.
Testing DNN Image Classifiers for Confusion & Bias Errors
Creators: name: Tian, Yuchi
name: Zhong, Ziyuan
name: Ordonez, Vicente
name: Kaiser, Gail
name: Ray, Baishakhi
Publisher: name: arXiv
Year: 2019
Subjects: subject: Software Engineering (cs.SE)
subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: Image classifiers are an important component of today's software, from consumer and business applications to safety-critical domains. The advent of Deep Neural Networks (DNNs) is the key catalyst behind such wide-spread success. However, wide adoption comes with serious concerns about the robustness of software systems dependent on DNNs for image classification, as several severe erroneous behaviors have been reported under sensitive and critical circumstances. We argue that developers need to rigorously test their software's image classifiers and delay deployment until acceptable. We present an approach to testing image classifier robustness based on class property violations. We found that many of the reported erroneous cases in popular DNN image classifiers occur because the trained models confuse one class with another or show biases towards some classes over others. These bugs usually violate some class properties of one or more of those classes. Most DNN testing techniques focus on per-image violations, so fail to detect class-level confusions or biases. We developed a testing technique to automatically detect class-based confusion and bias errors in DNN-driven image classification software. We evaluated our implementation, DeepInspect, on several popular image classifiers with precision up to 100% (avg.~72.6%) for confusion errors, and up to 84.3% (avg.~66.8%) for bias errors. DeepInspect found hundreds of classification mistakes in widely-used models, many exposing errors indicating confusion or bias.
Additional file 1: of Pediatric urgent care education: a survey-based needs assessment
Creators: name: Zhao, Xian
name: Koutroulis, Ioannis
name: Cohen, Joanna
name: Berkowitz, Deena
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: Science Policy
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Survey for urgent care directors. Includes the 10-question survey used for the needs-assessment study. (DOCX 17 kb)
Additional file 11 of Novel induction of CD40 expression by tumor cells with RAS/RAF/PI3K pathway inhibition augments response to checkpoint blockade
Creators: name: Yan, Chi
name: Saleh, Nabil
name: Yang, Jinming
name: Nebhan, Caroline A.
name: Vilgelm, Anna E.
name: Reddy, E. Premkumar
name: Roland, Joseph T.
name: Johnson, Douglas B.
name: Chen, Sheau-Chiann
name: Shattuck-Brandt, Rebecca L.
name: Ayers, Gregory D.
name: Richmond, Ann
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Additional file 11: Supplementary Figure. 11. Characterization of CD40 knockdown clones.
Pseudo-gaps for random hopping models
Creators: name: Dorsch, Florian
name: Schulz-Baldes, Hermann
Publisher: name: arXiv
Year: 2019
Subjects: subject: Mathematical Physics (math-ph)
subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: For one-dimensional random Schrödinger operators, the integrated density of states is known to be given in terms of the (averaged) rotation number of the Prüfer phase dynamics. This paper develops a controlled perturbation theory for the rotation number around an energy, at which all the transfer matrices commute and are hyperbolic. Such a hyperbolic critical energy appears in random hopping models. The main result is a Hölder continuity of the rotation number at the critical energy that, under certain conditions on the randomness, implies the existence of a pseudo-gap. The proof uses renewal theory. The result is illustrated by numerics.
description: minor corrections, published in J.Phys.A
Additional file 10 of Novel induction of CD40 expression by tumor cells with RAS/RAF/PI3K pathway inhibition augments response to checkpoint blockade
Creators: name: Yan, Chi
name: Saleh, Nabil
name: Yang, Jinming
name: Nebhan, Caroline A.
name: Vilgelm, Anna E.
name: Reddy, E. Premkumar
name: Roland, Joseph T.
name: Johnson, Douglas B.
name: Chen, Sheau-Chiann
name: Shattuck-Brandt, Rebecca L.
name: Ayers, Gregory D.
name: Richmond, Ann
Publisher: name: figshare
Year: 2021
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer
subject: Hematology

description: Additional file 10: Supplementary Figure. 10. Rigosertib + ICB combinatorial treatment reduces PD-L1+ Bregs.
Unquenched domain wall quarks with TSMB
Creators: name: Farchioni, F.
name: Gebert, C.
name: Montvay, I.
name: Scorzato, L.
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: The numerical simulation of domain wall quarks with the two-step multi-boson (TSMB) algorithm is investigated. Tests are performed on a 8^3*4 lattice with N_f=2 quark flavours.
description: 3 pages, 3 figures, conference contribution Lattice2002(chiral)
Improved Wilson QCD simulations at light quark masses
Creators: name: Irving, A. C.
name: Collaboration, UKQCD
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: FOS: Physical sciences

description: We present preliminary results from UKQCD simulations at light quark masses using two flavours of non-pertubatively improved Wilson fermions. We report on the performance of the standard HMC algorithm at these quark masses where m_pi/m_rho < 0.5 in comparison with simulations using improved staggered quarks.
description: Lattice 2002 (QCD spectrum and quark masses), 3 pages, 3 figures
Additional file 3 of Integrated interpretation of pXRF data on ancient nephrite artifacts excavated from Tomb No.1 in Yuehe Town, Henan Province, China
Creators: name: Chen, Dian
name: Yang, Yimin
name: Qiao, Baotong
name: Li, Jingpu
name: Luo, Wugan
Publisher: name: figshare
Year: 2022
Subjects: subject: Biotechnology
subject: Environmental Sciences not elsewhere classified
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: Cancer
subject: Plant Biology

description: Additional file 3: Table S3. Principal component analysis results of nephrite pieces with extremely similar appearance.
Controlling the Properties of Modular Materials
Creators: Russell, Jake Carter
Publisher: name: Columbia University
Year: 2021
Subjects: Chemistry
Materials science
Ligands
Crystals
Fullerenes
Annealing of crystals

description: I introduce the concept of modular materials and give a brief overview of their history and widespread occurrence in many areas of chemistry. I then discuss some of the many applications in which modular materials may find a use and link them to the following chapters. Chapter 1 describes the layered superatomic material Re₆Se₈Cl₂ and the induction of superconducting behavior in its single crystals through a current annealing technique. We suggest that this superconductivity arises through electron doping, as a result of dissociation of the apical Cl atoms from the clusters. Chapters 2-4 explore other types of superatomic materials and their properties, centered on the well-studied Co₆X₈ unit, where X is a chalcogen. Chapter 2 describes a Co₆Te₈-C₇₀ co-crystal that exhibits multiple phase changes with temperature, each giving rise to unique electronic, thermal, and structural properties. Chapter 3 describes a series of “solid solutions” of Co₆Se₈ and Cr₆Te₈ units. By varying the ratios of the component superatoms, transport properties of the crystals can be tuned, and unexpected behavior arises as a result of structural heterogeneity. Chapter 4 presents another study of Co₆Se₈ co-crystallized with rod-shaped C₁₄₀ fullerenes. The packing and electronic properties are found to be greatly affected by the degree of solvent inclusion. Chapters 5-6 examine another class of cluster-based materials: atomically precise gold nanoparticles. In Chapter 5 the cluster Au₂₁ is shown to self-assemble depending on the surface “hook” ligands, with corresponding differences in electronic transport. Chapter 6 discusses an interesting phase transition and thermally-induced hysteresis observed in crystals of the Au₁₀₃ cluster, also related to the surface ligand configuration. Chapters 7-8 take a different approach to modular materials, in the form of organic polymers. Using the robust, electroactive pigment molecule PDI as a common building block, we synthesize extended networks that are found to be exceptional pseudocapacitive energy storage materials. Chapter 7 introduces the honeycomb-shaped PDI-triptycene polymer, establishes its pseudocapacitive nature, and explores the role of cyclization in tuning its behavior. Chapter 8 expands upon the concept by combining PDI with hexaazatrinaphthalene to create a “contorted” network with best-in-class energy storage performance. In addition to in-depth kinetic analyses to elucidate the mechanism of storage, we fabricate two-electrode cells to demonstrate the material’s potential in real-world devices.
Solitary waves explore the quantum-to-classical transition
Creators: name: Sreedharan, A.
name: Kuriyattil, S
name: Choudhury, S.
name: Mukherjee, R.
name: Streltsov, A.
name: Wüster, S.
Publisher: name: arXiv
Year: 2019
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: It is an open fundamental question how the classical appearance of our environment arises from the underlying quantum many-body theory. We propose that phenomena involved in the quantum-to-classical transition can be probed in collisions of bright solitary waves in Bose- Einstein condensates, where thousands of atoms form a large compound object at ultra cold temperatures. For the experimentally most relevant quasi-1D regime, where integrability is broken through effective three-body interactions, we find that ensembles of solitary waves exhibit complex interplay between phase coherence and entanglement generation in beyond mean-field simulations using the truncated Wigner method: An initial state of two solitons with a well defined relative phase looses that phase coherence in the ensemble, with its single particle two-mode density matrix exhibiting similar dynamics as a decohering two mode superposition. This apparent decoherence is a prerequisite for the formation of entangled superpositions of different atom numbers in a subsequent soliton collision. The necessity for the solitons to first decohere is explained based on the underlying phase-space of the quintic mean field equation. We show elsewhere that superpositions of different atom numbers later further evolve into spatially entangled solitons. Loss of ensemble phase coherence followed by system internal entanglement generation appear in an unusual order in this closed system, compared to a typical open quantum system.
description: 8 pages, 5 figures, Completely reworked version
Additional file 1 of After the paint has dried: a review of testing techniques for studying the mechanical properties of artists’ paint
Creators: name: dePolo, Gwen
name: Walton, Marc
name: Keune, Katrien
name: Shull, Kenneth R.
Publisher: name: figshare
Year: 2021
Subjects: subject: Biophysics
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: Additional file 1. Appendix: Tensile testing tables.
Longitudinal study of the effects of teat condition on the risk of new intramammary infections in dairy cows
Creators: name: Zoche-Golob, V.
name: Haverkamp, H.
name: Paduch, J.-H.
name: Klocke, D.
name: Zinke, C.
name: Hoedemaker, M.
name: Heuwieser, W.
name: Krömker, V.
Publisher: name: Freie Universität Berlin
Year: 2015
Subjects: subject: 600 Technik, Medizin, angewandte Wissenschaften::630 Landwirtschaft

description: Machine milking–induced alterations of teat tissue may impair local defense mechanisms and increase the risk of new intramammary infections. The objective of the current study was to assess the influence of short-term and long-term alterations of teat tissue and infectious status of the udder quarter on the risk of naturally occurring new intramammary infections, inflammatory responses, and mastitis. Short-term and long-term changes in teat condition of right udder quarters of 135 cows of a commercial dairy farm in Saxony-Anhalt, Germany, were recorded monthly for 10 mo using simple classification schemes. Quarter milk samples were collected from all examined quarters at each farm visit. Bacteriological culture results and somatic cell counts of quarter milk samples were used to determine new inflammatory responses (increase from ≤100,000 cells/mL to >100,000 cells/mL between 2 samples), new infections (detection of a pathogen from a quarter that was free of the same pathogen at the preceding sampling), and new mastitis (combination of new inflammatory response and new infection). Separate Poisson mixed models for new inflammatory responses, new infections, and new mastitis caused by specific pathogens or groups of pathogens (contagious, environmental, major, minor, or any) were used to estimate risk ratios and 95% confidence intervals. Data preparation and parameter estimation were performed using the open source statistical analysis software R. We observed no effect of any variable describing teat condition on the risk of new intramammary infections, inflammatory responses, or mastitis. Intramammary infections of the same udder quarter in the preceding month did not affect risk either.
Association of multiple zeta values with positive knots via Feynman diagrams up to 9 loops
Creators: name: Broadhurst, D. J.
name: Kreimer, D.
Publisher: name: arXiv
Year: 1996
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: Quantum Algebra (math.QA)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: It is found that the number, $M_n$, of irreducible multiple zeta values (MZVs) of weight $n$, is generated by $1-x^2-x^3=\prod_n (1-x^n)^{M_n}$. For $9\ge n\ge3$, $M_n$ enumerates positive knots with $n$ crossings. Positive knots to which field theory assigns knot-numbers that are not MZVs first appear at 10 crossings. We identify all the positive knots, up to 15 crossings, that are in correspondence with irreducible MZVs, by virtue of the connection between knots and numbers realized by Feynman diagrams with up to 9 loops.
description: 15 pages, Latex, figures using EPSF, replaced version has references and conclusions updated, Eq.(7) revised; as to appear in Phys.Lett.B
Convergence Lines: A Musical Distillation of Thomas Pynchon’s V.
Creators: Trapani, Christopher Michael
Publisher: name: Columbia University
Year: 2017
Subjects: Composition (Music)
Music
Electronic musical instruments

description: This dissertation consists of two parts: Convergence Lines, my twenty-four-minute composition for ten instruments and electronics, and this subsidiary essay. Convergence Lines was written in 2013 to commemorate the 50th anniversary of the publication of Thomas Pynchon’s V. At the center of this discussion is my creative process in imagining a musical corollary to Pynchon’s fictional world: his large cast of vivid characters, far-flung settings, and disjointed sense of time. I also detail my attempt to fashion a formal parallel to the novel’s unorthodox structure of two independent strands of narrative that converge towards the end. I discuss the role of allusion in Pynchon’s work and in my own, and the various points of reference the music is meant to invoke. A second important topic is the role of electronics in the composition, presenting both a technical analysis of the tools employed and an aesthetic perspective, considering how the intrusion of non-acoustic sounds mirrors a central theme of V.: the gradual replacement of the animate by the inanimate. The thesis endeavors to explain from a composer’s perspective, and in an integrated, organic manner, the poetic, musical, and technical aspects behind my work.
Modular Groups of Quantum Fields in Thermal States
Creators: name: Borchers, H. J.
name: Yngvason, J.
Publisher: name: arXiv
Year: 1998
Subjects: subject: Mathematical Physics (math-ph)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences
subject: 81T05; 81T40

description: For a quantum field in a thermal equilibrium state we discuss the group generated by time translations and the modular action associated with an algebra invariant under half-sided translations. The modular flows associated with the algebras of the forward light cone and a space-like wedge admit a simple geometric description in two dimensional models that factorize in light-cone coordinates. At large distances from the domain boundary compared to the inverse temperature the flow pattern is essentially the same as time translations, whereas the zero temperature results are approximately reproduced close to the edge of the wedge and the apex of the cone. Associated with each domain there is also a one parameter group with a positive generator, for which the thermal state is a ground state. Formally, this may be regarded as a certain converse of the Unruh-effect.
description: 28 pages, 4 figures
Additional file 8 of Personalised nutrition advice reduces intake of discretionary foods and beverages: findings from the Food4Me randomised controlled trial
Creators: name: Livingstone, Katherine M.
name: Celis-Morales, Carlos
name: Navas-Carretero, Santiago
name: San-Cristobal, Rodrigo
name: Forster, Hannah
name: Woolhead, Clara
name: O’Donovan, Clare B.
name: Moschonis, George
name: Manios, Yannis
name: Traczyk, Iwona
name: Gundersen, Thomas E.
name: Drevon, Christian A.
name: Marsaux, Cyril F. M.
name: Fallaize, Rosalind
name: Macready, Anna L.
name: Daniel, Hannelore
name: Saris, Wim H. M.
name: Lovegrove, Julie A.
name: Gibney, Mike
name: Gibney, Eileen R.
name: Walsh, Marianne
name: Brennan, Lorraine
name: Martinez, J. Alfredo
name: Mathers, John C.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 8. Effect of personalised nutrition intervention on proportion of participants who perceived that they reduced the amount of total fat, sugars and salt consumed over the 6 months intervention.
Universality of Pattern Formation
Creators: name: Schindler, Moses A.
name: Schindler, Stella T.
name: Medina, Leandro
name: Ogilvie, Michael C.
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: Statistical Mechanics (cond-mat.stat-mech)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We study a $\mathcal PT$-symmetric scalar Euclidean field theory with a complex action, using both theoretical analysis and lattice simulations. This model has a rich phase structure that exhibits pattern formation in the critical region. Analytical results and simulations associate pattern formation with tachyonic instabilities in the homogeneous phase. Monte Carlo simulation shows that pattern morphologies vary smoothly, without distinct microphases. We suggest that pattern formation in this model may be regarded as a form of arrested spinodal decomposition. We extend our theoretical analysis to multicomponent $\mathcal PT$-symmetric Euclidean scalar field theories and show that they give rise to new universality classes of local field theories that exhibit patterned behavior in the critical region. QCD at finite temperature and density is a member of the $Z(2)$ universality class when the Polyakov loop is used to distinguish confined and deconfined phases. This suggests the possibility of the formation of patterns of confined and deconfined matter in QCD in the critical region in the $μ-T$ plane.
description: 13 pages, 6 figures; updated to mirror published version
Convergence of Modern-day Slavery with  Poverty, Drugs, and Conflict in Vulnerable Populations:  Training Rural Public Health Workers to Promote  Human Trafficking Awareness
Creators: Brooks, Sharmayne
Publisher: name: Columbia University
Year: 2018
Subjects: Health education
Human trafficking
Volunteer workers in community health services--Training of
Public health
Rural health

description: In spite of mass media attention and implementation of international laws in the last two decades, modern-day slavery is still active in communities across the globe. Individuals trapped in forced labor situations endure devastating physical and mental illnesses, with dire consequences that extend into families and neighborhoods. The call has been made for every citizen to join in the anti-human trafficking movement. Lawmakers, police, and border patrol officers are on alert in each major U.S. city. Yet, training some of the most valuable stakeholders who work among some of the most vulnerable populations has been largely overlooked.
      Rural public health workers, specifically promotoras, serving in Texas-Mexico border communities are a key component to activate in the anti-trafficking awareness and prevention efforts in this region. The current research examined the geographic and socioeconomic situation of the colonias in the Rio Grande Valley and the effect of the drug cartel conflict directly across the border. Through an online survey, this study assessed rural public health workers’ knowledge and awareness of human trafficking and educational needs on human trafficking issues.
      Results of this research indicate that limited education and training of rural public health workers on the topic of human trafficking contribute to the low rate of victim identification in the rural clinic and community settings. Recommendations for immediate training of this strategic population located on our southernmost U.S. border is proposed along with future research.
Additional file 2: of Prevalence and risk factors for impaired kidney function in the district of Anuradhapura, Sri Lanka: a cross-sectional population-representative survey in those at risk of chronic kidney disease of unknown aetiology
Creators: name: Thilanga Ruwanpathirana
name: Sameera Senanayake
name: Nalika Gunawardana
name: Asoka Munasinghe
name: Ginige, Samitha
name: Gamage, Deepa
name: Jagath Amarasekara
name: Buddi Lokuketagoda
name: Pubudu Chulasiri
name: Sarath Amunugama
name: Paba Palihawadana
name: Caplin, Ben
name: Pearce, Neil
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Biotechnology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Marine Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: 60506 Virology
subject: FOS: Biological sciences
subject: Computational Biology

description: Exclusion criteria. Table detailing the prevalence of the exclusion criteria by sex and study area (DOCX 29 kb)
A pair potential supporting a mixed mean-field / BCS- phase
Creators: name: Ilieva, N.
name: Thirring, W.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Mathematical Physics (math-ph)
subject: Condensed Matter (cond-mat)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We construct a Hamiltonian which in a scaling limit becomes equivalent to one that can be diagonalized by a Bogoliubov transformation. There may appear simultaneously a mean-field and a superconducting phase. They influence each other in a complicated way. For instance, an attractive mean field may stimulate the superconducting phase and a repulsive one may destroy it.
description: 11 pages, 5 figures, LaTeX
Conversation and Performance in Seventeenth-Century French Salon Culture
Creators: Lecoeur, Mallika
Publisher: name: Columbia University
Year: 2011
Subjects: subject: Literature
subject: Performing arts
subject: Sociology
subject: FOS: Sociology

description: This work focuses on social and artistic performance in seventeenth-century French salons, and the representation of this aristocratic culture through performance. It seeks to understand how polite amateurs regarded professional performers, and vice versa. I use the study of performance to reveal distinctive constraints and liberties of early modern aristocratic culture, to identify and compare its aesthetic and moral values, to uncover forgotten practices specific to the salon, and to elucidate the rapport between the sexes in this social setting. Finally, I consider the salon as a subject of dramatic representation in order to interrogate the distinctions and reflections between aristocratic performance and professional performance in the seventeenth century. The art of conversation practiced in the salon was a performance that hid itself between interlocutors under a guise of refined "naturalness." It was integral to aristocratic culture, as were the polite arts of singing, poetic recitation, acting, voiced reading, and impersonation. However, all of these performances presented certain risks for salonniers, for through them the performer could possibly appear affected, duplicitous, immodest, undignified, or malicious, the same vices commonly attributed to lowly stage performers. My study proposes answers to the following two questions: How did salonniers endeavor to reconcile performance artistry with the aristocratic ideals of naturalness and civility? How did salon performance practices in turn influence stage practice, notably the staging of salon conversation?
Additional file 7 of Personalised nutrition advice reduces intake of discretionary foods and beverages: findings from the Food4Me randomised controlled trial
Creators: name: Livingstone, Katherine M.
name: Celis-Morales, Carlos
name: Navas-Carretero, Santiago
name: San-Cristobal, Rodrigo
name: Forster, Hannah
name: Woolhead, Clara
name: O’Donovan, Clare B.
name: Moschonis, George
name: Manios, Yannis
name: Traczyk, Iwona
name: Gundersen, Thomas E.
name: Drevon, Christian A.
name: Marsaux, Cyril F. M.
name: Fallaize, Rosalind
name: Macready, Anna L.
name: Daniel, Hannelore
name: Saris, Wim H. M.
name: Lovegrove, Julie A.
name: Gibney, Mike
name: Gibney, Eileen R.
name: Walsh, Marianne
name: Brennan, Lorraine
name: Martinez, J. Alfredo
name: Mathers, John C.
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 7. Effect of personalised nutrition intervention on intake of discretionary foods and beverages at month 3.
A numerical approach to the non-uniqueness problem of cosmic ray two-fluid equations at shocks
Creators: name: Gupta, Siddhartha
name: Sharma, Prateek
name: Mignone, Andrea
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: Cosmic rays (CRs) are frequently modeled as an additional fluid in hydrodynamic (HD) and magnetohydrodynamic (MHD) simulations of astrophysical flows. The standard CR two-fluid model is described in terms of three conservation laws (expressing conservation of mass, momentum and total energy) and one additional equation (for the CR pressure) that cannot be cast in a satisfactory conservative form. The presence of non-conservative terms with spatial derivatives in the model equations prevents a unique weak solution behind a shock. We investigate a number of methods for the numerical solution of the two-fluid equations and find that, in the presence of shock waves, the results generally depend on the numerical details (spatial reconstruction, time stepping, the CFL number, and the adopted discretization). All methods converge to a unique result if the energy partition between the thermal and non-thermal fluids at the shock is prescribed using a subgrid prescription. This highlights the non-uniqueness problem of the two-fluid equations at shocks. From our numerical investigations, we report a robust method for which the solutions are insensitive to the numerical details even in absence of a subgrid prescription, although we recommend a subgrid closure at shocks using results from kinetic theory. The subgrid closure is crucial for a reliable post-shock solution and also its impact on large scale flows because the shock microphysics that determines CR acceleration is not accurately captured in a fluid approximation. Critical test problems, limitations of fluid modeling, and future directions are discussed.
description: 18 pages, 12 figures, 2 tables; MNRAS accepted version
Additional file 2 of Geo–economic variations in epidemiology, ventilation management and outcome of patients receiving intraoperative ventilation during general anesthesia– posthoc analysis of an observational study in 29 countries
Creators: name: Hol, Liselotte
name: Nijbroek, Sunny G. L. H.
name: Neto, Ary Serpa
name: Hemmes, Sabrine N. T.
name: Hedenstierna, Goran
name: Hiesmayr, Michael
name: Hollmann, Markus W.
name: Mills, Gary H.
name: Vidal Melo, Marcos F.
name: Putensen, Christian
name: Schmid, Werner
name: Severgnini, Paolo
name: Wrigge, Hermann
name: de Abreu, Marcelo Gama
name: Pelosi, Paolo
name: Schultz, Marcus J.
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Immunology
subject: FOS: Clinical medicine
subject: Science Policy
subject: Virology

description: Additional file 2. ARISAT score. The ARISCAT risk score is used to calculate the risk for developing postoperative pulmonary complications.
Convergence, Confusion, Conflation - An Analysis of the Intersection of Human Rights and Humanitarian Discourses
Creators: Comninos, Alexis
Publisher: name: Columbia University
Year: 2016
Subjects: subject: Humanitarian assistance
subject: Human rights
subject: Human rights advocacy
subject: Law
subject: FOS: Law

description: This study starts with an observation: human rights and humanitarianism are often conflated into one and the same thing, even by scholars of these respective fields. A muddled use of terminology makes this lack of clarity evident; as such, the importance and power of language and discourse lies at the centre of this project. This thesis is set out to explore intersections and map convergences of human rights and humanitarianism—as discourses, as practices, and as related bodies of law (International Human Rights Law (IHRL) and Humanitarian Law (IHL)). In doing so, it seeks to draw attention to the beneficial potential of an interaction that can –at times– be synergetic, but also to the tensions it creates, when, far from mutually strengthening, human rights and humanitarianism work in contradiction. First, this thesis analyses the rapprochement between IHL and IHRL. This initial focus on the legal frameworks sets the ground for the subsequent study of converging discourses and practices, but it is also intrinsically valuable, laying bare some of the tensions around the jurisdictions, scopes of application, and protections afforded by these bodies of law. Second, focusing on four big player – two on the human rights side (Amnesty International and Human Rights Watch), and two on the humanitarian side (the International Committee of the Red Cross and Médecins Sans Frontières), this thesis turns to analysing dominant discourses. Noting the increased overlap in scopes of activities, and thus in discourse, it studies the impacts of the humanitarian-isation of human rights reporting, as well as of the human rights-isation of humanitarian discourse and practice. Looking at the predicament between denunciation and access, central to humanitarian work, we see how the pervasion of rights-speak has influenced that dilemma, and the way humanitarian actors navigate it. Third, taking inspiration from Raymond Williams’s keyword approach, this study then zeroes in on the term ‘protection’, having identified it as central to this convergence. A closer analysis of this term’s evolution, (contested) meanings and uses allows us to unlock understandings of this phenomenon. This thesis considers ‘Protection’ –ubiquitous in both discourses– as it partly constitutes, and furthers the convergence. This thesis studies the efforts to make its definition consensual and some of the consequences of the confusion around it. Finally, by analysing the compounded terms of ‘protection of civilians’ and ‘responsibility to protect’, it explores the ways in which ‘protection’ penetrated UN discourse, acting as a Trojan horse for the tensions created by the convergence of human rights and humanitarianism