cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Momordica trifolia Linnaeus 1754
Creators: name: Jarvis, Charlie
Publisher: name: Linnaean Society of London in association with the Natural History Museum
Year: 2007
Subjects: Biodiversity
Taxonomy
Plantae
Tracheophyta
Magnoliopsida
Cucurbitales
Cucurbitaceae
Momordica
Momordica trifolia

description: Momordica trifolia Linnaeus, Herbarium Amboinense: 24. 1754.
["Habitat in India."] Sp. Pl., ed. 2, 2: 1434 (1763). RCN: 7319.
 Lectotype (Merrill, Interpret. Rumph. Herb. Amb.: 33, 494. 1917): [icon] "Poppya silvestris" in Rumphius, Herb. Amboin. 5: 414, t. 152, f. 2. 1747.
 Current name:  Momordica trifolia  L. (Cucurbitaceae).
 Note: Jeffrey & de Wilde (in Taxon 48: 599. 1999) proposed the name for rejection as its type, a Rumphius plate, is identifiable as the widespread M. cochinchinensis (Lour.) Spreng. However, the proposal was later withdrawn by its authors - see Brummitt (in Taxon 53: 814. 2004).
description: Published as part of Jarvis, Charlie, 2007, Chapter 7: Linnaean Plant Names and their Types (part M), pp. 651-689 in Order out of Chaos. Linnaean Plant Types and their Types, London :Linnaean Society of London in association with the Natural History Museum on page 681, DOI: 10.5281/zenodo.291971
Pancancer network analysis reveals key master regulators for cancer invasiveness
Creators: name: Jethalia, Mahesh
name: Ceccarelli, Michele
name: Raghvendra Mall
name: Siddhi Jani
Publisher: name: F1000 Research Limited
Year: 2024

description: Abstract

Background

Tumor invasiveness reflects numerous biological changes, including tumorigenesis, progression, and metastasis. To decipher the role of transcriptional regulators (TR) involved in tumor invasiveness, we performed a systematic network-based pan-cancer assessment of master regulators of cancer invasiveness.

Materials and methods

We stratified patients in The Cancer Genome Atlas (TCGA) into invasiveness high (INV-H) and low (INV-L) groups using consensus clustering based on an established robust 24-gene signature to determine the prognostic association of invasiveness with overall survival (OS) across 32 different cancers. We devise a network-based protocol to identify TRs as master regulators (MRs) unique to INV-H and INV-L phenotypes. We validated the activity of MRs coherently associated with INV-H phenotype and worse OS across cancers in TCGA on a series of additional datasets in the Prediction of Clinical Outcomes from the Genomic Profiles (PRECOG) repository.

Results

Based on the 24-gene signature, we defined the invasiveness score for each patient sample and stratified patients into INV-H and INV-L clusters. We observed that invasiveness was associated with worse survival outcomes in almost all cancers and had a significant association with OS in ten out of 32 cancers. Our network-based framework identified common invasiveness-associated MRs specific to INV-H and INV-L groups across the ten prognostic cancers, including COL1A1, which is also part of the 24-gene signature, thus acting as a positive control. Downstream pathway analysis of MRs specific to INV-H phenotype resulted in the identification of several enriched pathways, including Epithelial into Mesenchymal Transition, TGF-β signaling pathway, regulation of Toll-like receptors, cytokines, and inflammatory response, and selective expression of chemokine receptors during T-cell polarization. Most of these pathways have connotations of inflammatory immune response and feasibility for metastasis.

Conclusion

Our pan-cancer study provides a comprehensive master regulator analysis of tumor invasiveness and can suggest more precise therapeutic strategies by targeting the identified MRs and downstream enriched pathways for patients across multiple cancers.
Myzaphis turanica Nevsky 1929
Creators: name: Hassan, Muhammad Asghar
name: Asif, Muhammad
name: Chakrabarti, Samiran
name: Amin, Muhammad
name: Abbas, Zohair
name: Maryam, Zershina
name: Iqbal, Zafar
name: Ali, Muhammad
name: Qasim, Muhammad
name: Bashir, Nawaz Haider
name: Ali, Muhammad Yasir
name: Xing, Jichun
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Aphididae
Myzaphis
Myzaphis turanica

description: 187. Myzaphis turanica Nevsky, 1929
Host plant
Rosa sp. (Rosaceae).
Distribution in Pakistan
AK: Poonch; (Khai Gala, Rawalakot) (Amin et al. 2017a, 2022).
description: Published as part of Hassan, Muhammad Asghar, Asif, Muhammad, Chakrabarti, Samiran, Amin, Muhammad, Abbas, Zohair, Maryam, Zershina, Iqbal, Zafar, Ali, Muhammad, Qasim, Muhammad, Bashir, Nawaz Haider, Ali, Muhammad Yasir & Xing, Jichun, 2024, A comprehensive checklist and host plants of Aphididae (Aphidomorpha: Hemiptera) from Pakistan, pp. 1-114 in European Journal of Taxonomy 945 on page 44, DOI: 10.5852/ejt.2024.945.2613, http://zenodo.org/record/13177348
nach0: Multimodal Natural and Chemical Languages Foundation Model
Creators: name: Livne, Micha
name: Miftahutdinov, Zulfat
name: Tutubalina, Elena
name: Kuznetsov, Maksim
name: Polykovskiy, Daniil
name: Brundyn, Annika
name: Jhunjhunwala, Aastha
name: Costa, Anthony
name: Aliper, Alex
name: Aspuru-Guzik, Alán
name: Zhavoronkov, Alex
Publisher: name: arXiv
Year: 2023
Subjects: subject: Computation and Language (cs.CL)
subject: Artificial Intelligence (cs.AI)
subject: Machine Learning (cs.LG)
subject: Quantitative Methods (q-bio.QM)
subject: FOS: Computer and information sciences
subject: FOS: Biological sciences

description: Large Language Models (LLMs) have substantially driven scientific progress in various domains, and many papers have demonstrated their ability to tackle complex problems with creative solutions. Our paper introduces a new foundation model, nach0, capable of solving various chemical and biological tasks: biomedical question answering, named entity recognition, molecular generation, molecular synthesis, attributes prediction, and others. nach0 is a multi-domain and multi-task encoder-decoder LLM pre-trained on unlabeled text from scientific literature, patents, and molecule strings to incorporate a range of chemical and linguistic knowledge. We employed instruction tuning, where specific task-related instructions are utilized to fine-tune nach0 for the final set of tasks. To train nach0 effectively, we leverage the NeMo framework, enabling efficient parallel optimization of both base and large model versions. Extensive experiments demonstrate that our model outperforms state-of-the-art baselines on single-domain and cross-domain tasks. Furthermore, it can generate high-quality outputs in molecular and textual formats, showcasing its effectiveness in multi-domain setups.
description: Accepted to Chemical Science Journal. Models are publicly available via https://huggingface.co/insilicomedicine/nach0_base and https://huggingface.co/insilicomedicine/nach0_large
Mesoscopic ultrafast nonlinear optics -- The emergence of multimode quantum non-Gaussian physics
Creators: name: Yanagimoto, Ryotatsu
name: Ng, Edwin
name: Jankowski, Marc
name: Nehra, Rajveer
name: McKenna, Timothy P.
name: Onodera, Tatsuhiro
name: Wright, Logan G.
name: Hamerly, Ryan
name: Marandi, Alireza
name: Fejer, M. M.
name: Mabuchi, Hideo
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Physics (quant-ph)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: Over the last few decades, nonlinear optics has become significantly more nonlinear, traversing nearly a billionfold improvement in energy efficiency, with ultrafast nonlinear nanophotonics in particular emerging as a frontier for combining both spatial and temporal engineering. At present, cutting-edge experiments in nonlinear nanophotonics place us just above the mesoscopic regime, where a few hundred photons suffice to trigger nonlinear saturation. In contrast to classical or deep-quantum optics, the mesoscale is characterized by dynamical interactions between mean-field, Gaussian, and non-Gaussian quantum features, all within a close hierarchy of scales. When combined with the inherent multimode complexity of optical fields, such hybrid quantum-classical dynamics present theoretical, experimental, and engineering challenges to the contemporary framework of quantum optics. In this review, we highlight the unique physics that emerges in multimode nonlinear optics at the mesoscale and outline key principles for exploiting both classical and quantum features to engineer novel functionalities. We briefly survey the experimental landscape and draw attention to outstanding technical challenges in materials, dispersion engineering, and device design for accessing mesoscopic operation. Finally, we speculate on how these capabilities might usher in some new paradigms in quantum photonics, from quantum-augmented information processing to nonclassical-light-driven dynamics and phenomena to all-optical non-Gaussian measurement and sensing. The physics unlocked at the mesoscale present significant challenges and opportunities in theory and experiment alike, and this review is intended to serve as a guidepost as we begin to navigate this new frontier in ultrafast quantum nonlinear optics.
description: The first two authors contributed equally to this work; 26 pages, 7 figures
Systematically Revisiting All NuSTAR Spins of Black Holes in X-Ray Binaries
Creators: name: Draghis, Paul A.
name: Miller, Jon M.
name: Costantini, Elisa
name: Gallo, Luigi C.
name: Reynolds, Mark
name: Tomsick, John A.
name: Zoghbi, Abderahmen
Publisher: name: arXiv
Year: 2023
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: We extend our recent work on black hole spin in X-ray binary systems to include an analysis of 189 archival NuSTAR observations from 24 sources. Using self-consistent data reduction pipelines, spectral models, and statistical techniques, we report an unprecedented and uniform sample of 36 stellar-mass black hole spin measurements based on relativistic reflection. This treatment suggests that prior reports of low spins in a small number of sources were generally erroneous: our comprehensive treatment finds that those sources tend to harbor black holes with high spin values. Overall, within $1σ$ uncertainty, $\sim86\%$ of the sample are consistent with $a \geq 0.95$, $\sim94\%$ of the sample are consistent with $a\geq 0.9$, and $100\%$ is consistent with $a\geq 0.7$ (the theoretical maximum for neutron stars; $a = cJ/GM^{2}$). We also find that the high-mass X-ray binaries (those with A-, B-, or O-type companions) are consistent with $a\geq 0.9$ within the $1σ$ errors; this is in agreement with the low-mass X-ray binary population and may be especially important for comparisons to black holes discovered in gravitational wave events. In some cases, different spectra from the same source yield similar spin measurements but conflicting values for the inclination of the inner disk; we suggest that this is due to variable disk winds obscuring the blue wing of the relativistic Fe K emission line. We discuss the implications of our measurements, the unique view of systematic uncertainties enabled by our treatment, and future efforts to characterize black hole spins with new missions.
description: 22 pages in main body, including 6 figures and one table. 48 figures in appendices. Published in ApJ
On the bias in iterative quantum amplitude estimation
Creators: name: Miyamoto, Koichi
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Quantum amplitude estimation (QAE) is a pivotal quantum algorithm to estimate the squared amplitude $a$ of the target basis state in a quantum state $|Φ\rangle$. Various improvements on the original quantum phase estimation-based QAE have been proposed for resource reduction. One of such improved versions is iterative quantum amplitude estimation (IQAE), which outputs an estimate $\hat{a}$ of $a$ through the iterated rounds of the measurements on the quantum states like $G^k|Φ\rangle$, with the number $k$ of operations of the Grover operator $G$ (the Grover number) and the shot number determined adaptively. This paper investigates the bias in IQAE. Through the numerical experiments to simulate IQAE, we reveal that the estimate by IQAE is biased and the bias is enhanced for some specific values of $a$. We see that the termination criterion in IQAE that the estimated accuracy of $\hat{a}$ falls below the threshold is a source of the bias. Besides, we observe that $k_\mathrm{fin}$, the Grover number in the final round, and $f_\mathrm{fin}$, a quantity affecting the probability distribution of measurement outcomes in the final round, are the key factors to determine the bias, and the bias enhancement for specific values of $a$ is due to the skewed distribution of $(k_\mathrm{fin},f_\mathrm{fin})$. We also present a bias mitigation method: just re-executing the final round with the Grover number and the shot number fixed.
description: 13 pages, 6 figures
Myzus cerasi
Creators: name: Hassan, Muhammad Asghar
name: Asif, Muhammad
name: Chakrabarti, Samiran
name: Amin, Muhammad
name: Abbas, Zohair
name: Maryam, Zershina
name: Iqbal, Zafar
name: Ali, Muhammad
name: Qasim, Muhammad
name: Bashir, Nawaz Haider
name: Ali, Muhammad Yasir
name: Xing, Jichun
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Aphididae
Myzus
Myzus cerasi

description: 188. Myzus cerasi (Fabricius, 1775)
Host plant
Galium verum (Rubiaceae).
Distribution in Pakistan
KPK: Chitral, Dir (Lowari Pass); widespread species, particularly in the northern hemisphere (Blackman & Eastop 1984; Naumann-Etienne & Remaudière 1995).
description: Published as part of Hassan, Muhammad Asghar, Asif, Muhammad, Chakrabarti, Samiran, Amin, Muhammad, Abbas, Zohair, Maryam, Zershina, Iqbal, Zafar, Ali, Muhammad, Qasim, Muhammad, Bashir, Nawaz Haider, Ali, Muhammad Yasir & Xing, Jichun, 2024, A comprehensive checklist and host plants of Aphididae (Aphidomorpha: Hemiptera) from Pakistan, pp. 1-114 in European Journal of Taxonomy 945 on page 45, DOI: 10.5852/ejt.2024.945.2613, http://zenodo.org/record/13177348
Using non-convex optimization in quantum process tomography: Factored gradient descent is tough to beat
Creators: name: Quiroga, David A.
name: Kyrillidis, Anastasios
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Physics (quant-ph)
subject: Optimization and Control (math.OC)
subject: FOS: Physical sciences
subject: FOS: Mathematics

description: We propose a non-convex optimization algorithm, based on the Burer-Monteiro (BM) factorization, for the quantum process tomography problem, in order to estimate a low-rank process matrix $χ$ for near-unitary quantum gates. In this work, we compare our approach against state of the art convex optimization approaches based on gradient descent. We use a reduced set of initial states and measurement operators that require $2 \cdot 8^n$ circuit settings, as well as $\mathcal{O}(4^n)$ measurements for an underdetermined setting. We find our algorithm converges faster and achieves higher fidelities than state of the art, both in terms of measurement settings, as well as in terms of noise tolerance, in the cases of depolarizing and Gaussian noise models.
description: 10 pages, 5 figures
Fast Fourier Transform periodic interpolation method for superposition sums in a periodic unit cell
Creators: name: Ai, Fangzhou
name: Lomakin, Vitaliy
Publisher: name: arXiv
Year: 2023
Subjects: subject: Numerical Analysis (math.NA)
subject: Mathematical Physics (math-ph)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Mathematics
subject: FOS: Physical sciences

description: We propose a Fast Fourier Transform based Periodic Interpolation Method (FFT-PIM), a flexible and computationally efficient approach for computing the scalar potential given by a superposition sum in a unit cell of an infinitely periodic array. Under the same umbrella, FFT-PIM allows computing the potential for 1D, 2D, and 3D periodicities for dynamic and static problems, including problems with and without a periodic phase shift. The computational complexity of the FFT-PIM is of $O(N \log N)$ for $N$ spatially coinciding sources and observer points. The FFT-PIM uses rapidly converging series representations of the Green's function serving as a kernel in the superposition sum. Based on these representations, the FFT-PIM splits the potential into its near-zone component, which includes a small number of images surrounding the unit cell of interest, and far-zone component, which includes the rest of an infinite number of images. The far-zone component is evaluated by projecting the non-uniform sources onto a sparse uniform grid, performing superposition sums on this sparse grid, and interpolating the potential from the uniform grid to the non-uniform observation points. The near-zone component is evaluated using an FFT-based method, which is adapted to efficiently handle non-uniform source-observer distributions within the periodic unit cell. The FFT-PIM can be used for a broad range of applications, such as periodic problems involving integral equations in computational electromagnetic and acoustic, micromagnetic solvers, and density functional theory solvers.
Learning Multi-graph Structure for Temporal Knowledge Graph Reasoning
Creators: name: Zhang, Jinchuan
name: Hui, Bei
name: Mu, Chong
name: Tian, Ling
Publisher: name: arXiv
Year: 2023
Subjects: subject: Artificial Intelligence (cs.AI)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: Temporal Knowledge Graph (TKG) reasoning that forecasts future events based on historical snapshots distributed over timestamps is denoted as extrapolation and has gained significant attention. Owing to its extreme versatility and variation in spatial and temporal correlations, TKG reasoning presents a challenging task, demanding efficient capture of concurrent structures and evolutional interactions among facts. While existing methods have made strides in this direction, they still fall short of harnessing the diverse forms of intrinsic expressive semantics of TKGs, which encompass entity correlations across multiple timestamps and periodicity of temporal information. This limitation constrains their ability to thoroughly reflect historical dependencies and future trends. In response to these drawbacks, this paper proposes an innovative reasoning approach that focuses on Learning Multi-graph Structure (LMS). Concretely, it comprises three distinct modules concentrating on multiple aspects of graph structure knowledge within TKGs, including concurrent and evolutional patterns along timestamps, query-specific correlations across timestamps, and semantic dependencies of timestamps, which capture TKG features from various perspectives. Besides, LMS incorporates an adaptive gate for merging entity representations both along and across timestamps effectively. Moreover, it integrates timestamp semantics into graph attention calculations and time-aware decoders, in order to impose temporal constraints on events and narrow down prediction scopes with historical statistics. Extensive experimental results on five event-based benchmark datasets demonstrate that LMS outperforms state-of-the-art extrapolation models, indicating the superiority of modeling a multi-graph perspective for TKG reasoning.
Exciton dynamics from the mapping approach to surface hopping: Comparison with Förster and Redfield theories
Creators: name: Runeson, Johan E.
name: Fay, Thomas P.
name: Manolopoulos, David E.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: We compare the recently introduced multi-state mapping approach to surface hopping (MASH) with the Förster and Redfield theories of excitation energy transfer. Whereas Förster theory relies on weak coupling between chromophores, and Redfield theory assumes the electronic excitations to be weakly coupled to fast chromophore vibrations, MASH is free from any perturbative or Markovian approximations. We illustrate this with an example application to the rate of energy transfer in a Frenkel-exciton dimer, showing that MASH interpolates correctly between the opposing regimes in which the Förster and Redfield results are reliable. We then compare the three methods for a realistic model of the Fenna-Matthews-Olson complex with a structured vibrational spectral density and static disorder in the excitation energies. In this case there are no exact results for comparison so we use MASH to assess the validity of Förster and Redfield theories. We find that Förster theory is the more accurate of the two on the picosecond timescale, as has been shown previously for a simpler model of this particular light-harvesting complex. We also explore various ways to sample the initial electronic state in MASH and find that they all give very similar results for exciton dynamics.
description: 10 pages, 3 figures
Myzus cornutus Medda & Chakrabarti 1986
Creators: name: Hassan, Muhammad Asghar
name: Asif, Muhammad
name: Chakrabarti, Samiran
name: Amin, Muhammad
name: Abbas, Zohair
name: Maryam, Zershina
name: Iqbal, Zafar
name: Ali, Muhammad
name: Qasim, Muhammad
name: Bashir, Nawaz Haider
name: Ali, Muhammad Yasir
name: Xing, Jichun
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Aphididae
Myzus
Myzus cornutus

description: 189. Myzus cornutus Medda & Chakrabarti, 1986
Host plant
Prunus cornuta (Rosaceae).
Distribution in Pakistan
UNK: common in the northeastern hills (Naumann-Etienne & Remaudière 1995).
description: Published as part of Hassan, Muhammad Asghar, Asif, Muhammad, Chakrabarti, Samiran, Amin, Muhammad, Abbas, Zohair, Maryam, Zershina, Iqbal, Zafar, Ali, Muhammad, Qasim, Muhammad, Bashir, Nawaz Haider, Ali, Muhammad Yasir & Xing, Jichun, 2024, A comprehensive checklist and host plants of Aphididae (Aphidomorpha: Hemiptera) from Pakistan, pp. 1-114 in European Journal of Taxonomy 945 on page 45, DOI: 10.5852/ejt.2024.945.2613, http://zenodo.org/record/13177348
Myzus hemerocallis Takahashi 1921
Creators: name: Hassan, Muhammad Asghar
name: Asif, Muhammad
name: Chakrabarti, Samiran
name: Amin, Muhammad
name: Abbas, Zohair
name: Maryam, Zershina
name: Iqbal, Zafar
name: Ali, Muhammad
name: Qasim, Muhammad
name: Bashir, Nawaz Haider
name: Ali, Muhammad Yasir
name: Xing, Jichun
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Aphididae
Myzus
Myzus hemerocallis

description: 190. Myzus hemerocallis Takahashi, 1921
Host plant
Hemerocallis sp. (Liliaceae).
Distribution in Pakistan
PB: Islamabad Capital (Naumann-Etienne & Remaudière 1995; Blackman & Eastop 2006).
description: Published as part of Hassan, Muhammad Asghar, Asif, Muhammad, Chakrabarti, Samiran, Amin, Muhammad, Abbas, Zohair, Maryam, Zershina, Iqbal, Zafar, Ali, Muhammad, Qasim, Muhammad, Bashir, Nawaz Haider, Ali, Muhammad Yasir & Xing, Jichun, 2024, A comprehensive checklist and host plants of Aphididae (Aphidomorpha: Hemiptera) from Pakistan, pp. 1-114 in European Journal of Taxonomy 945 on page 45, DOI: 10.5852/ejt.2024.945.2613, http://zenodo.org/record/13177348
Physics-Guided Continual Learning for Predicting Emerging Aqueous Organic Redox Flow Battery Material Performance
Creators: name: Fu, Yucheng
name: Howard, Amanda
name: Zeng, Chao
name: Chen, Yunxiang
name: Gao, Peiyuan
name: Stinis, Panos
Publisher: name: arXiv
Year: 2023
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: Aqueous organic redox flow batteries (AORFBs) have gained popularity in renewable energy storage due to their low cost, environmental friendliness and scalability. The rapid discovery of aqueous soluble organic (ASO) redox-active materials necessitates efficient machine learning surrogates for predicting battery performance. The physics-guided continual learning (PGCL) method proposed in this study can incrementally learn data from new ASO electrolytes while addressing catastrophic forgetting issues in conventional machine learning. Using a ASO anolyte database with a thousand potential materials generated by a 780 $\text{cm}^2$ interdigitated cell model, PGCL incorporates AORFB physics to optimize the continual learning task formation and training process. This achieves higher efficiency and robustness compared to the non-physics-guided continual learning while retaining previously learned battery material knowledge. The trained PGCL demonstrates its capability in assessing emerging ASO materials within the established parameter space when evaluated with the dihydroxyphenazine isomers.
description: 12 pages, 6 figures
Myzus maculocorpus Basu & Raychaudhuri 1976
Creators: name: Hassan, Muhammad Asghar
name: Asif, Muhammad
name: Chakrabarti, Samiran
name: Amin, Muhammad
name: Abbas, Zohair
name: Maryam, Zershina
name: Iqbal, Zafar
name: Ali, Muhammad
name: Qasim, Muhammad
name: Bashir, Nawaz Haider
name: Ali, Muhammad Yasir
name: Xing, Jichun
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Aphididae
Myzus
Myzus maculocorpus

description: 191. Myzus maculocorpus Basu & Raychaudhuri, 1976
Host plant
Setaria sp. (Poaceae).
Distribution in Pakistan
KPK: Chitral, Dir (Lowari Pass) (Naumann-Etienne & Remaudière 1995).
description: Published as part of Hassan, Muhammad Asghar, Asif, Muhammad, Chakrabarti, Samiran, Amin, Muhammad, Abbas, Zohair, Maryam, Zershina, Iqbal, Zafar, Ali, Muhammad, Qasim, Muhammad, Bashir, Nawaz Haider, Ali, Muhammad Yasir & Xing, Jichun, 2024, A comprehensive checklist and host plants of Aphididae (Aphidomorpha: Hemiptera) from Pakistan, pp. 1-114 in European Journal of Taxonomy 945 on page 45, DOI: 10.5852/ejt.2024.945.2613, http://zenodo.org/record/13177348
UINav: A Practical Approach to Train On-Device Automation Agents
Creators: name: Li, Wei
name: Hsu, Fu-Lin
name: Bishop, Will
name: Campbell-Ajala, Folawiyo
name: Lin, Max
name: Riva, Oriana
Publisher: name: arXiv
Year: 2023
Subjects: subject: Human-Computer Interaction (cs.HC)
subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: Automation systems that can autonomously drive application user interfaces to complete user tasks are of great benefit, especially when users are situationally or permanently impaired. Prior automation systems do not produce generalizable models while AI-based automation agents work reliably only in simple, hand-crafted applications or incur high computation costs. We propose UINav, a demonstration-based approach to train automation agents that fit mobile devices, yet achieving high success rates with modest numbers of demonstrations. To reduce the demonstration overhead, UINav uses a referee model that provides users with immediate feedback on tasks where the agent fails, and automatically augments human demonstrations to increase diversity in training data. Our evaluation shows that with only 10 demonstrations UINav can achieve 70% accuracy, and that with enough demonstrations it can surpass 90% accuracy.
Myzus obtusirostris David, Narayanan & Rajasingh 1972
Creators: name: Hassan, Muhammad Asghar
name: Asif, Muhammad
name: Chakrabarti, Samiran
name: Amin, Muhammad
name: Abbas, Zohair
name: Maryam, Zershina
name: Iqbal, Zafar
name: Ali, Muhammad
name: Qasim, Muhammad
name: Bashir, Nawaz Haider
name: Ali, Muhammad Yasir
name: Xing, Jichun
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Aphididae
Myzus
Myzus obtusirostris

description: 192. Myzus obtusirostris David, Narayanan &Rajasingh, 1972
Host plants
Triticum aestivum, Zea mays (Poaceae).
Distribution in Pakistan
KPK: Mansehra (Kaghan Valley, Naran Valley), Swat; PB: Rawalpindi (Bhurban, Murre) (Hamid 1983; Naumann-Etienne & Remaudière 1995).
description: Published as part of Hassan, Muhammad Asghar, Asif, Muhammad, Chakrabarti, Samiran, Amin, Muhammad, Abbas, Zohair, Maryam, Zershina, Iqbal, Zafar, Ali, Muhammad, Qasim, Muhammad, Bashir, Nawaz Haider, Ali, Muhammad Yasir & Xing, Jichun, 2024, A comprehensive checklist and host plants of Aphididae (Aphidomorpha: Hemiptera) from Pakistan, pp. 1-114 in European Journal of Taxonomy 945 on page 45, DOI: 10.5852/ejt.2024.945.2613, http://zenodo.org/record/13177348
Myzus ornatus Laing 1932
Creators: name: Hassan, Muhammad Asghar
name: Asif, Muhammad
name: Chakrabarti, Samiran
name: Amin, Muhammad
name: Abbas, Zohair
name: Maryam, Zershina
name: Iqbal, Zafar
name: Ali, Muhammad
name: Qasim, Muhammad
name: Bashir, Nawaz Haider
name: Ali, Muhammad Yasir
name: Xing, Jichun
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Aphididae
Myzus
Myzus ornatus

description: 193. Myzus ornatus Laing, 1932
Host plants
Aster sp., Bidens biternata, Sonchus asper (Asteraceae), Tecoma stans (L.) Juss. ex Kunth (Bignoniaceae), Prunus cornuta (Rosaceae).
Distribution in Pakistan
AK: Bagh, Poonch (Abbaspur, Hajira, Rawalakot, Thorar), Sudhanoti (Mang, Trar Khel); KPK: Swat (Kalam Valley); PB: Rawalpindi (Murree); cosmopolitan species (Naumann-Etienne & Remaudière 1995; Amin et al. 2017b, 2019a, 2022).
description: Published as part of Hassan, Muhammad Asghar, Asif, Muhammad, Chakrabarti, Samiran, Amin, Muhammad, Abbas, Zohair, Maryam, Zershina, Iqbal, Zafar, Ali, Muhammad, Qasim, Muhammad, Bashir, Nawaz Haider, Ali, Muhammad Yasir & Xing, Jichun, 2024, A comprehensive checklist and host plants of Aphididae (Aphidomorpha: Hemiptera) from Pakistan, pp. 1-114 in European Journal of Taxonomy 945 on pages 45-46, DOI: 10.5852/ejt.2024.945.2613, http://zenodo.org/record/13177348
Myzus siegesbeckicola Strand 1929
Creators: name: Hassan, Muhammad Asghar
name: Asif, Muhammad
name: Chakrabarti, Samiran
name: Amin, Muhammad
name: Abbas, Zohair
name: Maryam, Zershina
name: Iqbal, Zafar
name: Ali, Muhammad
name: Qasim, Muhammad
name: Bashir, Nawaz Haider
name: Ali, Muhammad Yasir
name: Xing, Jichun
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Aphididae
Myzus
Myzus siegesbeckicola

description: 194. Myzus siegesbeckicola Strand, 1929
Host plant
Sigesbeckia orientalis L. (Asteraceae).
Distribution in Pakistan
PB: Islamabad Capital (Naumann-Etienne & Remaudière 1995).
description: Published as part of Hassan, Muhammad Asghar, Asif, Muhammad, Chakrabarti, Samiran, Amin, Muhammad, Abbas, Zohair, Maryam, Zershina, Iqbal, Zafar, Ali, Muhammad, Qasim, Muhammad, Bashir, Nawaz Haider, Ali, Muhammad Yasir & Xing, Jichun, 2024, A comprehensive checklist and host plants of Aphididae (Aphidomorpha: Hemiptera) from Pakistan, pp. 1-114 in European Journal of Taxonomy 945 on page 46, DOI: 10.5852/ejt.2024.945.2613, http://zenodo.org/record/13177348
Exact analytical solutions for the kinks, the solitons and the shocks in discrete nonlinear transmission line with nonlinear capacitance
Creators: name: Kogan, Eugene
Publisher: name: arXiv
Year: 2024
Subjects: subject: Pattern Formation and Solitons (nlin.PS)
subject: Systems and Control (eess.SY)
subject: Applied Physics (physics.app-ph)
subject: FOS: Physical sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: We studied discrete transmission lines constructed from ideal linear inductors and nonlinear capacitors (and possibly resistors). The localised travelling waves in the lossless transmission lines are the kinks and the solitons, which speeds and profiles were calculated. The localised travelling waves in the lossy transmission lines are the dissipative kinks and the shocks, which speeds and profiles were also calculated.
description: pdfLaTeX, 6 pages, 2 figures. As accepted for publication in Physica Status Solidi (b)
Myzus sorbi Bhattacharya & Chakrabarti 1982
Creators: name: Hassan, Muhammad Asghar
name: Asif, Muhammad
name: Chakrabarti, Samiran
name: Amin, Muhammad
name: Abbas, Zohair
name: Maryam, Zershina
name: Iqbal, Zafar
name: Ali, Muhammad
name: Qasim, Muhammad
name: Bashir, Nawaz Haider
name: Ali, Muhammad Yasir
name: Xing, Jichun
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Aphididae
Myzus
Myzus sorbi

description: 195. Myzus sorbi Bhattacharya & Chakrabarti, 1982
Host plant
Sorbaria tomentosa (Lindl.) Rehder (Rosaceae).
Distribution in Pakistan
UNK (Naumann-Etienne & Remaudière 1995).
description: Published as part of Hassan, Muhammad Asghar, Asif, Muhammad, Chakrabarti, Samiran, Amin, Muhammad, Abbas, Zohair, Maryam, Zershina, Iqbal, Zafar, Ali, Muhammad, Qasim, Muhammad, Bashir, Nawaz Haider, Ali, Muhammad Yasir & Xing, Jichun, 2024, A comprehensive checklist and host plants of Aphididae (Aphidomorpha: Hemiptera) from Pakistan, pp. 1-114 in European Journal of Taxonomy 945 on page 46, DOI: 10.5852/ejt.2024.945.2613, http://zenodo.org/record/13177348
Retrospektive Analyse der Behandlungsergebnisse und –endpunkte von Patienten mit einem lokal begrenztem Prostatakarzinom, die eine definitive perkutane Strahlentherapie erhalten haben
Creators: name: Thum, Jonas
Publisher: name: Universität Rostock
Year: 2023
Subjects: subject: 610 Medical sciences Medicine

description: Die Dissertationsschrift befasst sich mit Patienten welche im Zeitraum vom 01.01.2010 und 31.12.2015 aufgrund eines lokal begrenzten Prostatakarzinoms eine definitiv perkutane Strahlentherapie erhalten haben. Untersucht wurden onkologische Endpunte wie Gesamtüberleben und rezidivfreies Überleben in Abhängigkeit der verwendeten Strahlenapplikationstechnik. Darüber hinaus wurden verschiedene unabhängige Prognosefaktoren identifiziert und die Patienten hinsichtlich Lebensqualttät und therapieassoziierter Toxizitäten verglichen.
Inference of Parameters for Back-shifted Fermi Gas Model using Feedback Neural Network
Creators: name: Du, Peng-Xiang
name: Shang, Tian-Shuai
name: Geng, Kun-Peng
name: Li, Jian
name: Fang, Dong-Liang
Publisher: name: arXiv
Year: 2024
Subjects: subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: The back-shifted Fermi gas model is widely employed for calculating nuclear level density (NLD) as it can effectively reproduce experimental data by adjusting parameters. However, selecting parameters for nuclei lacking experimental data poses a challenge. In this study, the feedforward neural network (FNN) was utilized to learn the level density parameters at neutron separation energy $a(S_{n})$ and the energy shift $\varDelta$ for 289 nuclei. Simultaneously, parameters for nearly 3000 nuclei are provided through the FNN. Using these parameters, calculations were performed for neutron resonance spacing in $s$ and $p$ waves, cumulative number of levels, and NLD. The FNN results were also compared with the calculated outcomes of the parameters from fitting experimental data (local parameters) and those obtained from systematic studies (global parameters), as well as the experimental data. The results indicate that parameters from the FNN achieve performance comparable to local parameters in reproducing experimental data. Moreover, for extrapolated nuclei, parameters from the FNN still offer a robust description of experimental data.
description: 11 pages, 10 figures
Reliability and Interpretability in Science and Deep Learning
Creators: name: Scorzato, Luigi
Publisher: name: arXiv
Year: 2024
Subjects: subject: Artificial Intelligence (cs.AI)
subject: Machine Learning (cs.LG)
subject: History and Philosophy of Physics (physics.hist-ph)
subject: FOS: Computer and information sciences
subject: FOS: Physical sciences

description: In recent years, the question of the reliability of Machine Learning (ML) methods has acquired significant importance, and the analysis of the associated uncertainties has motivated a growing amount of research. However, most of these studies have applied standard error analysis to ML models, and in particular Deep Neural Network (DNN) models, which represent a rather significant departure from standard scientific modelling. It is therefore necessary to integrate the standard error analysis with a deeper epistemological analysis of the possible differences between DNN models and standard scientific modelling and the possible implications of these differences in the assessment of reliability. This article offers several contributions. First, it emphasises the ubiquitous role of model assumptions (both in ML and traditional Science) against the illusion of theory-free science. Secondly, model assumptions are analysed from the point of view of their (epistemic) complexity, which is shown to be language-independent. It is argued that the high epistemic complexity of DNN models hinders the estimate of their reliability and also their prospect of long-term progress. Some potential ways forward are suggested. Thirdly, this article identifies the close relation between a model's epistemic complexity and its interpretability, as introduced in the context of responsible AI. This clarifies in which sense, and to what extent, the lack of understanding of a model (black-box problem) impacts its interpretability in a way that is independent of individual skills. It also clarifies how interpretability is a precondition for assessing the reliability of any model, which cannot be based on statistical analysis alone. This article focuses on the comparison between traditional scientific models and DNN models. But, Random Forest and Logistic Regression models are also briefly considered.
description: To appear in Minds and Machines
TRAINING IN CRITICAL ANALYSIS OF INFORMATION IS A NECESSARY ELEMENT OF TRAINING PROFESSIONAL PHILOLOGISTS
Creators: name: Xujamkulov, Aziz
name: Seyitniyazova, Nilufar
Publisher: name: Zenodo
Year: 2024

description: In the field of philology, the ability to critically analyze information is a crucial skill that all professionals must possess. Philologists study language, literature, and culture, and they must be able to evaluate and interpret a wide range of texts and sources. Training in critical analysis of information is therefore an essential element of their education and professional development. One of the primary reasons why training in critical analysis of information is necessary for professional philologists is that it enables them to evaluate the credibility and reliability of sources. In their work, philologists often encounter a variety of texts and materials, some of which may be unreliable or biased. By developing the ability to critically analyze information, philologists can assess the quality of sources and determine whether they can be trusted. This is particularly important in a field like philology, where accuracy and precision are paramount.
Myzus varians Davidson 1912
Creators: name: Hassan, Muhammad Asghar
name: Asif, Muhammad
name: Chakrabarti, Samiran
name: Amin, Muhammad
name: Abbas, Zohair
name: Maryam, Zershina
name: Iqbal, Zafar
name: Ali, Muhammad
name: Qasim, Muhammad
name: Bashir, Nawaz Haider
name: Ali, Muhammad Yasir
name: Xing, Jichun
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hemiptera
Aphididae
Myzus
Myzus varians

description: 196. Myzus varians Davidson, 1912
Host plant
Prunus mume (Siebold) Siebold & Zucc. (Rosaceae).
Distribution in Pakistan
PB: Rawalpindi (Bodlah et al. 2011).
description: Published as part of Hassan, Muhammad Asghar, Asif, Muhammad, Chakrabarti, Samiran, Amin, Muhammad, Abbas, Zohair, Maryam, Zershina, Iqbal, Zafar, Ali, Muhammad, Qasim, Muhammad, Bashir, Nawaz Haider, Ali, Muhammad Yasir & Xing, Jichun, 2024, A comprehensive checklist and host plants of Aphididae (Aphidomorpha: Hemiptera) from Pakistan, pp. 1-114 in European Journal of Taxonomy 945 on page 46, DOI: 10.5852/ejt.2024.945.2613, http://zenodo.org/record/13177348
All-optical source size and emittance measurements of laser-accelerated electron beams
Creators: name: Salgado, F. C.
name: Kozan, A.
name: Seipt, D.
name: Hollatz, D.
name: Hilz, P.
name: Kaluza, M.
name: Sävert, A.
name: Seidel, A.
name: Ullmann, D.
name: Zhao, Y.
name: Zepf, M.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Accelerator Physics (physics.acc-ph)
subject: Optics (physics.optics)
subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: Novel schemes for generating ultra-low emittance electron beams have been developed in past years and promise compact particle sources with excellent beam quality suitable for future high-energy physics experiments and free-electron lasers. Recent theoretical work has proposed a laser-based method capable of resolving emittances in the sub 0.1 mm mrad regime, by modulating the electron phase-space ponderomotively. Here we present a first experimental demonstration of this scheme using a laser wakefield accelerator. The observed emittance and source size is consistent with published values. We also show calculations demonstrating that tight bounds on the upper limit for emittance and source size can be derived from the 'laser-grating' method even in the presence of low signal to noise and uncertainty in laser-grating parameters.
description: 13 pages, 13 figures; journal published version
Non-linear-enabled localization in driven-dissipative photonic lattices
Creators: name: Heras, A. Muñoz de las
name: Amo, A.
name: González-Tudela, A.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Optics (physics.optics)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: Recent experimental work has demonstrated the ability to achieve reconfigurable photon localization in lossy photonic lattices by continuously driving them with lasers strategically positioned at specific locations. This localization results from the perfect, destructive interference of light emitted from different positions and, because of that, occurs only at very specific frequencies. Here, we examine this localization regime in the presence of standard optical Kerr non-linearities, such as those found in polaritonic lattices, and show that they stabilize driven-dissipative localization across frequency ranges significantly broader than those observed in the linear regime. Moreover, we demonstrate that, contrary to intuition, in most siutations this driven-dissipative localization does not enhance non-linear effects like optical bistabilities, due to a concurrent reduction in overall intensities. Nevertheless, we are able to identify certain parameter regions where non-linear enhancement is achieved, corresponding to situations where emission from different spots constructively interferes.
description: 16 pages, 9 figures
Nano-optical investigation of grain boundaries, strain and edges in CVD grown MoS$_{2}$ monolayers
Creators: name: Sousa, Frederico B.
name: Nadas, Rafael Battistella
name: Martins, Rafael
name: Barboza, Ana P. M.
name: Soares, Jaqueline S.
name: Neves, Bernardo R. A.
name: Silvestre, Ive
name: Jorio, Ado
name: Malard, Leandro M.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: The role of defects in two-dimensional semiconductors and how they affect the intrinsic properties of these materials have been a wide researched topic over the past decades. Optical characterization such as photoluminescence and Raman spectroscopies are important tools to probe their physical properties and the impact of defects. However, conventional optical techniques present a spatial resolution limitation lying in a $μ$m-scale, which can be overcomed by the use of near-field optical measurements. Here, we use tip-enhanced photoluminescence and Raman spectroscopies to unveil nanoscale optical heterogeneities at grain boundaries, local strain fields and edges in grown MoS$_{2}$ monolayers. A noticeable enhancement of the exciton peak intensity corresponding to a trion emission quenching is observed at narrow regions down to 47 nm of width at grain boundaries related to doping effects. Besides, localized strain fields inside the sample lead to non-uniformities in the intensity and energy position of photoluminescence peaks. Finally, distinct samples present different nano-optical responses at their edges due to strain and passivation defects. The passivated defective edges show a photoluminescence intensity enhancement and energy blueshift as well as a frequency blueshift of the 2LA Raman mode. On the other hand, the strained edges display a photoluminescence energy redshift and frequency redshifts for E$_{2g}$ and 2LA Raman modes. Our work shows that different defect features can be only probed by using optical spectroscopies with a nanometric resolution, thus revealing hindered local impact of different nanoscale defects in two-dimensional materials.
Linear Periodically Time-Variant Digital PLL Phase Noise Modeling Using Conversion Matrices and Uncorrelated Upsampling
Creators: name: Lu, Hongyu
name: Mercier, Patrick P.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Signal Processing (eess.SP)
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: This paper introduces a conversion matrix method for linear periodically time-variant (LPTV) digital phase-locked loop (DPLL) phase noise modeling that offers precise and computationally efficient results to enable rapid design iteration and optimization. Unlike many previous studies, which either assume linear time-invariance (LTI) and therefore overlook phase noise aliasing effects, or solve LPTV systems with noise folding and multiple sampling rate conversions that heightens modeling and computational complexity, the proposed conversion matrix method allows the designer to represent LPTV systems using intuitive LTI-like transfer functions with excellent accuracy. Additionally, the uncorrelated upsampling method addresses the cross-correlated spectrum of cyclostationary noise sources by a simple matrix multiplication. This eliminates the need to consider the beat frequency of the upsampled noise source and the system with different sampling rates, thus improving computational efficiency. The proposed algorithm is applied to modeling a integer-N DPLL with time-varying proportional loop gain, and the modeling accuracy is validated with Simulink transient simulations.
description: 13 pages, 24 figures
From square plaquettes to triamond lattices for SU(2) gauge theory
Creators: name: Kavaki, Ali H. Z.
name: Lewis, Randy
Publisher: name: arXiv
Year: 2024
Subjects: subject: High Energy Physics - Lattice (hep-lat)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Lattice gauge theory should be able to address significant new scientific questions when implemented on quantum computers. In practice, error-mitigation techniques have already allowed encouraging progress on small lattices. In this work we focus on a truncated version of SU(2) gauge theory, which is a familiar non-Abelian step toward quantum chromodynamics. First, we demonstrate effective error mitigation for imaginary time evolution on a lattice having two square plaquettes, obtaining the ground state using an IBM quantum computer and observing that this would have been impossible without error mitigation. Then we propose the triamond lattice as an expedient approach to lattice gauge theories in three spatial dimensions and we derive the Hamiltonian. Finally, error-mitigated imaginary time evolution is applied to the three-dimensional triamond unit cell, and its ground state is obtained from an IBM quantum computer. Future work will want to relax the truncation on the gauge fields, and the triamond lattice is increasingly valuable for such studies.
description: 14 pages, 8 figures, v2 has additional results and matches the published version