cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Pickeliana Mello-Leitao 1932
Creators: name: Ázara, Ludson Neves De
name: Ferreira, Rodrigo Lopes
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Opiliones
Stygnidae
Pickeliana

description: 147. Pickeliana morpho. 1
(Fig. 32E)
Records in caves. PARÁ. Parauapebas: Caverna GEM-1743, id. by L.N. Ázara, (ISLA 19104); Caverna GEM- 1779, id. by L.N. Ázara, (ISLA 19105); Caverna GEM-1785, id. by L.N. Ázara, (ISLA 13074).
description: Published as part of Ázara, Ludson Neves De & Ferreira, Rodrigo Lopes, 2018, Annotated checklist of Gonyleptoidea (Opiliones: Laniatores) associated with Brazilian caves, pp. 1-107 in Zootaxa 4439 (1) on page 88, DOI: 10.11646/zootaxa.4439.1.1, http://zenodo.org/record/1298055
Sonnenfleckenzeichnung Nr. 18519.
Zeichnung von Flecken und Fackelflächen zur Ermittlung der Sonnenaktivität am 01.09.1953, erstellt von Helmut Müller
Creators: name: [s.n.]
Publisher: name: [s.n.]
Year: 1953

description: Bleistiftzeichnung mit Tinte und Farbstift überschrieben, erstellt als Projektionsbildzeichnung in der Eidgenössischen Sternwarte Zürich. Instrument: Kern-Merz-Refraktor.
Die Beobachtungen zu Einzelflecken und zu Sonnenfleckengruppen wurden mit Bleistift auf einem Vordruck eingetragen. Später wurden ergänzende Angaben aufgrund auswärtiger Beobachtungen direkt auf der Fleckenzeichnung hinzugefügt. Unter Umständen sind Angaben zu Protuberanzen vermerkt
Sonnenfleckenzeichnung unnummeriert, einen Zürcher Lückentag ergänzend.
Zeichnung von Flecken und Fackelflächen zur Ermittlung der Sonnenaktivität am 03.11.1953, erstellt von V. am Skalnate Pleso Observatorium
Creators: name: [s.n.]
Publisher: name: [s.n.]
Year: 1953

description: Bleistiftzeichnung mit Tinte und Farbstift, erstellt als Zeichnung am Skalnate Pleso Observatorium. Es sind zudem statistische Angaben für die Bestimmung der Fleckenrelativzahl notiert. Instrument: unbekannt, Sonnenbild D = 25 cm
IPBES Technical Guideline Series - Part 9: Considerations when working with Indigenous and local knowledge
Creators: name: IPBES Technical Support Unit On Knowledge And Data
name: IPBES Technical Support Unit On Indigenous And Local Knowledge
Publisher: name: Zenodo
Year: 2022
Subjects: IPBES
ILK
FAIR
CARE

description: These technical guidelines have been prepared by the technical support unit on knowledge and data and reviewed by the task force on knowledge and data within IPBES. The approved version of these guidelines are available at https://ict.ipbes.net/data-management/technical-guidelines Part 9 of the technical guideline series, Considerations when working with Indigenous and local knowledge, provides practical guidance on how to work with Indigenous and Local Knowledge (ILK) within IPBES following the requirements in the IPBES data and knowledge management policy and free, prior, and informed consent (FPIC) as laid out in the IPBES methodological guidance on recognizing and working with indigenous and local knowledge. If interested, all source files are also available on my GitHub. For any questions, feedback, or suggestions for future guidelines, contact tsu.data@ipbes.net.
Protimesius junina Villarreal 2006
Creators: name: Ázara, Ludson Neves De
name: Ferreira, Rodrigo Lopes
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Opiliones
Stygnidae
Protimesius
Protimesius junina

description: 148. Protimesius junina Villarreal & Pinto-da-Rocha, 2006
Records in caves. BAHIA. Pau Brasil: Caverna Califórnia (Villarreal & Pinto-da-Rocha 2006).
Epigean records. BRAZIL. BAHIA. Itororó (Villarreal & Pinto-da-Rocha 2006).
description: Published as part of Ázara, Ludson Neves De & Ferreira, Rodrigo Lopes, 2018, Annotated checklist of Gonyleptoidea (Opiliones: Laniatores) associated with Brazilian caves, pp. 1-107 in Zootaxa 4439 (1) on page 88, DOI: 10.11646/zootaxa.4439.1.1, http://zenodo.org/record/1298055
Ladislavella B. Dybowski 1913
Creators: name: Anistratenko, V. V.
name: Furyk, Yu. I.
name: Anistratenko, O. Yu.
name: Degtyarenko, E. V.
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Lymnaeidae
Ladislavella

description: Genus Ladislavella B. Dybowski, 1913 Type species: Ladislavella sorensis B. Dybowski, 1913 = Ladislavella terebra (Westerlund, 1885)
description: Published as part of Anistratenko, V. V., Furyk, Yu. I., Anistratenko, O. Yu. & Degtyarenko, E. V., 2019, A Review Of Species Diversity, Distribution And Ecology Of Freshwater Gastropod Molluscs Inhabiting The Ukrainian Transcarpathian, pp. 349-374 in Vestnik Zoologii 53 (5) on page 364, DOI: 10.2478/vzoo-2019-0033, http://zenodo.org/record/6949164
Structural conversion of the transformer protein RfaH: new insights derived from protein structure prediction and molecular dynamics simulations
Creators: name: Balasco, Nicole
name: Barone, Daniela
name: Vitagliano, Luigi
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Plant Biology
subject: Computational Biology

description: Recent structural investigations have shown that the C-terminal domain (CTD) of the transcription factor RfaH undergoes unique structural modifications that have a profound impact into its functional properties. These modifications cause a complete change in RfaHCTD topology that converts from an α-hairpin to a β-barrel fold. To gain insights into the determinants of this major structural conversion, we here performed computational studies (protein structure prediction and molecular dynamics simulations) on RfaHCTD. Although these analyses, in line with literature data, suggest that the isolated RfaHCTD has a strong preference for the β-barrel fold, they also highlight that a specific region of the protein is endowed with a chameleon conformational behavior. In particular, the Leu-rich region (residues 141–145) has a good propensity to adopt both α-helical and β-structured states. Intriguingly, in the RfaH homolog NusG, whose CTD uniquely adopts the β-barrel fold, the corresponding region is rich in residues as Val or Ile that present a strong preference for the β-structure. On this basis, we suggest that the presence of this Leu-rich element in RfaHCTD may be responsible for the peculiar structural behavior of the domain. The analysis of the sequences of RfaH family (PfamA code PF02357) unraveled that other members potentially share the structural properties of RfaHCTD. These observations suggest that the unusual conformational behavior of RfaHCTD may be rare but not unique.
Conformational changes and allosteric communications in human serum albumin due to ligand binding
Creators: name: Navjeet Ahalawat
name: Murarka, Rajesh K.
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Hematology
subject: Computational Biology

description: It is well recognized that knowledge of structure alone is not sufficient to understand the fundamental mechanism of biomolecular recognition. Information of dynamics is necessary to describe motions involving relevant conformational states of functional importance. We carried out principal component analysis (PCA) of structural ensemble, derived from 84 crystal structures of human serum albumin (HSA) with different ligands and/or different conditions, to identify the functionally important collective motions, and compared with the motions along the low-frequency modes obtained from normal mode analysis of the elastic network model (ENM) of unliganded HSA. Significant overlap is observed in the collective motions derived from PCA and ENM. PCA and ENM analysis revealed that ligand selects the most favored conformation from accessible equilibrium structures of unliganded HSA. Further, we analyzed dynamic network obtained from molecular dynamics simulations of unliganded HSA and fatty acids- bound HSA. Our results show that fatty acids-bound HSA has more robust community network with several routes to communicate among different parts of the protein. Critical nodes (residues) identified from dynamic network analysis are in good agreement with allosteric residues obtained from sequence-based statistical coupling analysis method. This work underscores the importance of intrinsic structural dynamics of proteins in ligand recognition and can be utilized for the development of novel drugs with optimum activity.
Sonnenfleckenzeichnung Nr. 18530.
Zeichnung von Flecken und Fackelflächen zur Ermittlung der Sonnenaktivität am 12.09.1953, erstellt von Helmut Müller
Creators: name: [s.n.]
Publisher: name: [s.n.]
Year: 1953

description: Bleistiftzeichnung mit Tinte und Farbstift überschrieben, erstellt als Projektionsbildzeichnung in der Eidgenössischen Sternwarte Zürich. Instrument: Kern-Merz-Refraktor.
Die Beobachtungen zu Einzelflecken und zu Sonnenfleckengruppen wurden mit Bleistift auf einem Vordruck eingetragen. Später wurden ergänzende Angaben aufgrund auswärtiger Beobachtungen direkt auf der Fleckenzeichnung hinzugefügt. Unter Umständen sind Angaben zu Protuberanzen vermerkt
Sonnenfleckenzeichnung, unnummeriert.
Zeichnung von Flecken und Fackelflächen zur Ermittlung der Sonnenaktivität nach einer Projektion vom 24.12.1953, erstellt von Max Waldmeier am Astrophysikalischen Observatorium Tschuggen in Arosa
Creators: name: [s.n.]
Publisher: name: [s.n.]
Year: 1953

description: Bleistiftzeichnung mit Tinte und Farbstift überschrieben, erstellt als Projektionsbildzeichnung am Astrophysikalischen Observatorium Tschuggen in Arosa. Instrument: Visuelles Objektiv an der Coelostatenanlage (15 cm Öffnung und 224 cm Brennweite, projiziertes Sonnenbild D = 25 cm). - Instrumentennachweis gemäss früherem Tätigkeitsber., S. 4.
Die Beobachtungen zu Einzelflecken und zu Sonnenfleckengruppen wurden mit Bleistift auf einem Vordruck eingetragen
ПЕРЕВАГИ РАКЕТИ З КОМПОЗИТНОГО МАТЕРІАЛУ
Creators: name: Lazareva, J.
name: Tkachov, Yurii
name: Lazarev, I.
Publisher: name: figshare
Year: 2022
Subjects: subject: Aerospace Engineering
subject: FOS: Mechanical engineering
subject: 90103 Aerospace Structures
subject: 90102 Aerospace Materials

description: В статье рассматривается массовый расчет одноступенчатой твёрдотопливной ракеты-носителя из композитного материала, а именно расчет коэффициента весового совершенства. Уменьшение коэффициента весового совершенства связано с применением новых конструктивно-компоновочных решений, а также с использованием новых материалов. Предлагаем рассмотреть удельную прочность композитного материала «кевлар», как наиболее применяемого в ракетостроении композитного материала. В настоящее время большие перспективы в ракето-и самолетостроении связывают с композиционным материалам из-за их привлекательных механических характеристик. Приведены примеры компоненты конструкций ракет из композитного материала «кевлар», которые используются в настоящее время в странах: США, Франция. Предложено решение задачи по выведению полезного груза на низкую круговую орбиту одноступенчатой ракетой с ракетным двигателем твердого топлива из композитного материала, в то время, как с этой задачей может справиться только двух ступенчатая металлическая ракета с жидкостным ракетным двигателем. В данной статье предлагается сравнить энергетические возможности одноступенчатой твердотопливной композитной ракеты с двухступенчатой металлической ракетой с жидкостным ракетным двигателем. Рассмотрена возможность увеличения длинны камеры сгорания ракетного двигателя твердого топлива, а следовательно и всей ракеты,(не уменьшая устойчивости корпуса) при использовании …
Amino acid composition analysis of secondary transport proteins from Escherichia coli with relation to functional classification, ligand specificity and structure
Creators: name: Saidijam, Massoud
name: Patching, Simon G.
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Biophysics
subject: Biochemistry
subject: Medicine
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: Molecular Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology

description: We have performed an amino acid composition (AAC) analysis of the complete sequences for 235 secondary transport proteins from Escherichia coli, which have functions in the uptake and export of organic and inorganic metabolites, efflux of drugs and in controlling membrane potential. This revealed the trends in content for specific amino acid types and for combinations of amino acids with similar physicochemical properties. In certain proteins or groups of proteins, the so-called spikes of high content for a specific amino acid type or combination of amino acids were identified and confirmed statistically, which in some cases could be directly related to function and ligand specificity. This was prevalent in proteins with a function of multidrug or metal ion efflux. Any tool that can help in identifying bacterial multidrug efflux proteins is important for a better understanding of this mechanism of antibiotic resistance. Phylogenetic analysis based on sequence alignments and comparison of sequences at the N- and C-terminal ends confirmed transporter Family classification. Locations of specific amino acid types in some of the proteins that have crystal structures (EmrE, LacY, AcrB) were also considered to help link amino acid content with protein function. Though there are limitations, this work has demonstrated that a basic analysis of AAC is a useful tool to use in combination with other computational and experimental methods for classifying and investigating function and ligand specificity in a large group of transport or other membrane proteins, including those that are molecular targets for development of new drugs.
Protimesius laevis
Creators: name: Ázara, Ludson Neves De
name: Ferreira, Rodrigo Lopes
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Opiliones
Stygnidae
Protimesius
Protimesius laevis

description: 149. Protimesius laevis (Sorensen, 1932)
(Figs 32F, 33A)
Records in caves. PARÁ. Curionópolis: Caverna SL-71, id. by L.N. Ázara, (ISLA 13069), (ISLA 13217); Caverna SL-72, id. by L.N. Ázara, (ISLA 13069). Canaã dos Carajás: Caverna GEM-1342, id. by L.N. Ázara, (MZSP 65278); Caverna GEM-1417, id. by L.N. Ázara, (MZSP 64968); Caverna GEM-1422, id. by L.N. Ázara, (MZSP 64969); Caverna GEM-1437, id. by L.N. Ázara, (MZSP 64972); Caverna GEM-1439, id. by L.N. Ázara, (MZSP 64982); Caverna GEM-1461, id. by L.N. Ázara, (MZSP 65287); Caverna GEM-1475, id. by L.N. Ázara, (MZSP 32991); Caverna GEM-1486, id. by L.N. Ázara, (MZSP 65277); Caverna GEM-1501, id. by L.N. Ázara, (MZSP 65284); Caverna GEM-1504, id. by L.N. Ázara, (MZSP 32992)... (see the complete localities records in table 1).
Epigean records. BRAZIL. MATO GROSSO. Chapada dos Guimarães (Pinto-da-Rocha 1997). PARÁ. Ananindeua (Pinto-da-Rocha 1997); Belém (Soares & Soares 1978); Jacundá (Pinto-da-Rocha 1997); Municipality unspecified (SØrensen 1932).
description: Published as part of Ázara, Ludson Neves De & Ferreira, Rodrigo Lopes, 2018, Annotated checklist of Gonyleptoidea (Opiliones: Laniatores) associated with Brazilian caves, pp. 1-107 in Zootaxa 4439 (1) on page 88, DOI: 10.11646/zootaxa.4439.1.1, http://zenodo.org/record/1298055
IFAD Research Series 83: The future of farming: who will produce our food?
Creators: name: Giller, Ken E.
name: Andersson, Jens
name: Delaune, Thomas
name: Silva, João Vasco
name: Descheemaeker, Katrien
name: Van De Ven, Gerrie
name: Schut, Antonius G.T.
name: Van Wijk, Mark
name: Hammond, Jim
name: Hochman, Zvi
name: Taulya, Godfrey
name: Chikowo, Regis
name: Narayanan, Sudha
name: Kishore, Avinash
name: Bresciani, Fabrizio
name: Mancini Teixeira, Heitor
name: Van Ittersum, Martin
name: Giller, Ken E.
name: Andersson, Jens
name: Delaune, Thomas
name: Silva, João Vasco
name: Descheemaeker, Katrien
name: Van De Ven, Gerrie
name: Schut, Antonius G.T.
name: Van Wijk, Mark
name: Hammond, Jim
name: Hochman, Zvi
name: Taulya, Godfrey
name: Chikowo, Regis
name: Narayanan, Sudha
name: Kishore, Avinash
name: Bresciani, Fabrizio
name: Mancini Teixeira, Heitor
name: Van Ittersum, Martin
Publisher: name: Unknown
Year: 2022
Subjects: subject: Agricultural and Food Policy
subject: Food Consumption/Nutrition/Food Safety
subject: Population growth
subject: food security
subject: smallholder farms
subject: farm size
subject: yield gaps
subject: living income
subject: sustainable intensification

description: Achieving zero hunger means food systems must deliver nutritious diets for all. These systems must be sustainable—providing farmers with sufficient livelihoods while protecting natural ecosystems. Concurrently, the economic viability of farms is coming into question, while changing patterns of land ownership, rental, and exchange mean that the concept of what a farm is becoming increasingly fluid. In this report, we highlight past trends and explore possible future trajectories of smallholder farming to predict who the farmers of the future are. Smallholder farms will remain an important source of food and income, and a social safety net in the absence of alternative livelihood security. Therefore, pro-poor policies and investments are needed to stimulate small-scale agriculture and rural development.
pH-induced structural change of a multi-tryptophan protein MPT63 with immunoglobulin-like fold: identification of perturbed tryptophan residue/residues
Creators: name: Manini Mukherjee
name: Ranendu Ghosh
name: Krishnananda Chattopadhyay
name: Sanjib Ghosh
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Molecular Biology
subject: Pharmacology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Plant Biology

description: The structural change of M. tuberculosis MPT63, which is predominantly a β-sheet protein having an immunoglobulin like fold, has been investigated in the pH range 7.5–1.5 using various biophysical techniques along with low-temperature phosphorescence (LTP) spectroscopy. MPT63 contains four Tryptophan (Trp) residues at 26, 48, 82, and 129. Although circular dichroism, steady-state and time-resolved fluorescence, time-resolved anisotropy, 1-aniline-8-naphthalene sulfonic (ANS) acid binding, and analytical ultracentrifuge depict more open largely unfolded structure of MPT63 at pH 1.5 and also more accessible nature of Trp residues to neutral quencher at pH 1.5, it is, however, not possible to assign the specific Trp residue/residues being perturbed. This problem has been resolved using LTP of MPT63, which shows optically resolved four distinct (0, 0) bands corresponding to four Trp residues in the pH range 7.5–3.0. LTP at pH 1.5 clearly reveals that the solvent-exposed Trp 82 and the almost buried Trp 129 are specifically affected compared with Trp 48 and Trp 26. Lys 8 and Lys 27 are predicted to affect Trp 129. Tyrosine residues are found to be silent even at pH 1.5. This type of specific perturbation in a multi-Trp protein has not been addressed before. LTP further indicates that partially exposed Trp 48 is preferentially quenched by acrylamide compared with other Trp residues at both pH 7.5 and 1.5. The solvent-exposed Trp 82 is surprisingly found to be not quenched by acrylamide at pH 7.5. All the results are obtained using micromolar concentration of protein and without using any Trp-substituted mutant.
Sonnenfleckenzeichnung unnummeriert, einen Zürcher Lückentag ergänzend.
Zeichnung von Flecken und Fackelflächen zur Ermittlung der Sonnenaktivität am 10.12.1953, erstellt am Sonnenobservatorium Kanzelhöhe, Kärnten
Creators: name: [s.n.]
Publisher: name: [s.n.]
Year: 1953

description: Bleistiftzeichnung mit Tinte und Bleistift, erstellt als Zeichnung nach eigener Vorlage im Sonnenobservatorium Kanzelhöhe in Sattendorf, Österreich. Instrument: Heliostat mit Refraktor Eigenbau (Öffnung 110mm, f = 1650mm, projiziertes Sonnenbild D = 25cm)
Sonnenfleckenzeichnung unnummeriert, einen Zürcher Lückentag ergänzend.
Zeichnung von Flecken und Fackelflächen zur Ermittlung der Sonnenaktivität am 29.09.1953, erstellt am Sonnenobservatorium Kanzelhöhe, Kärnten
Creators: name: [s.n.]
Publisher: name: [s.n.]
Year: 1953

description: Bleistiftzeichnung mit Tinte und Bleistift, erstellt als Zeichnung nach eigener Vorlage im Sonnenobservatorium Kanzelhöhe in Sattendorf, Österreich. Instrument: Heliostat mit Refraktor Eigenbau (Öffnung 110mm, f = 1650mm, projiziertes Sonnenbild D = 25cm)
Hyphenation of ultra-high-performance liquid chromatography and ion mobility mass spectrometry for the analysis of sequence-defined oligomers with different functionalities and tacticity
Creators: name: Berg, Marie-Theres
name: Herberg, Artjom
name: Kuckling, Dirk
Publisher: name: Taylor & Francis
Year: 2022
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences

description: In recent years, sequence-defined oligomers (SDOs) gained increasing interest due to their perfectly controlled molecular structure, thus providing defined properties. In order to tune the properties, different functionalities need to be incorporated into the oligomers and the chain tacticity needs to be controlled. Beside the synthesis of SDOs, suitable methods need to be found to analyze the molecular structure. In this work, oligomers exhibiting an alternating or block-wise sequence of side chain functionalities were analyzed using a hyphenation of ultra-high-performance liquid chromatography and electrospray ionization mass spectrometry enhanced by ion mobility separation (IMS). Moieties in the side chains were varied according to polarity and bulkiness. Moreover, chain tacticity was varied. Drift times in the IMS cell and the corresponding collision cross section (CCS) values were shown to be individual parameters allowing the identification of SDOs, even in the case that SDO structures only differ in sequence or tacticity of side chain functionalities. Thus, a library of CCS values was obtained as reference used for the analysis of complex mixtures of SDOs.
Protimesius longipalpis
Creators: name: Ázara, Ludson Neves De
name: Ferreira, Rodrigo Lopes
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Opiliones
Stygnidae
Protimesius
Protimesius longipalpis

description: 150. Protimesius longipalpis (Roewer, 1943)
(Figs 33B, C, 41D)
Records in caves. Parauapebas: Caverna GEM-1787, id. by L.N. Ázara, (ISLA 13082); Caverna GEM-1795, id. by L.N. Ázara, (ISLA 13083).
Epigean records. BRAZIL. AMAZONAS. Manaus (Roewer 1943); Presidente Figueiredo (Pinto-da-Rocha 1997).
description: Published as part of Ázara, Ludson Neves De & Ferreira, Rodrigo Lopes, 2018, Annotated checklist of Gonyleptoidea (Opiliones: Laniatores) associated with Brazilian caves, pp. 1-107 in Zootaxa 4439 (1) on page 88, DOI: 10.11646/zootaxa.4439.1.1, http://zenodo.org/record/1298055
Deciphering the GPER/GPR30-agonist and antagonists interactions using molecular modeling studies, molecular dynamics, and docking simulations
Creators: name: D. Méndez-Luna
name: M. Martínez-Archundia
name: Maroun, Rachid C.
name: G. Ceballos-Reyes
name: M.J. Fragoso-Vázquez
name: D.E. González-Juárez
name: J. Correa-Basurto
Publisher: name: Taylor & Francis
Year: 2015
Subjects: subject: Biophysics
subject: Biochemistry
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Cell Biology
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Cancer
subject: Computational Biology

description: The G-protein coupled estrogen receptor 1 GPER/GPR30 is a transmembrane seven-helix (7TM) receptor involved in the growth and proliferation of breast cancer. Due to the absence of a crystal structure of GPER/GPR30, in this work, molecular modeling studies have been carried out to build a three-dimensional structure, which was subsequently refined by molecular dynamics (MD) simulations (up to 120 ns). Furthermore, we explored GPER/GPR30’s molecular recognition properties by using reported agonist ligands (G1, estradiol (E2), tamoxifen, and fulvestrant) and the antagonist ligands (G15 and G36) in subsequent docking studies. Our results identified the E2 binding site on GPER/GPR30, as well as other receptor cavities for accepting large volume ligands, through GPER/GPR30 π–π, hydrophobic, and hydrogen bond interactions. Snapshots of the MD trajectory at 14 and 70 ns showed almost identical binding motifs for G1 and G15. It was also observed that C107 interacts with the acetyl oxygen of G1 (at 14 ns) and that at 70 ns the residue E275 interacts with the acetyl group and with the oxygen from the other agonist whereas the isopropyl group of G36 is oriented toward Met141, suggesting that both C107 and E275 could be involved in the protein activation. This contribution suggest that GPER1 has great structural changes which explain its great capacity to accept diverse ligands, and also, the same ligand could be recognized in different binding pose according to GPER structural conformations.
Saving large fish through harvest slots outperforms the classical minimum‐length limit when the aim is to achieve multiple harvest and catch‐related fisheries objectives
Creators: name: Ahrens, Robert
name: Allen, Micheal S.
name: Walters, Carl
name: Arlinghaus, Robert
Publisher: name: Humboldt-Universität zu Berlin
Year: 2021
Subjects: subject: Beverton and Holt
subject: Esox lucius
subject: hyperallometry
subject: maternal effects
subject: recreational fisheries
subject: Ricker
subject: 570 Biologie

description: We address the problem of optimal size-selective exploitation in an age-structured fish population model by systematically examining how density and size dependency in growth, mortality and fecundity affect optimal harvesting patterns when judged against a set of fisheries objectives. The study offers five key insights. First, while minimum-length limits often maximize the biomass yield, exploitation using harvest slots (i.e. regulations that protect both immature and very large individuals) can generate within 95% of maximum yield; harvest slots also generally maximize the number of fish that are harvested. Second, density dependence in growth and size-dependent mortality predict more liberal optimal size limits than those derived under assumptions of no density and size dependence. Third, strong density dependence in growth maximizes the catch of trophy fish only when modest harvest is introduced; the same holds for numbers harvested, when the stock–recruitment function follows the Ricker type. Fourth, the inclusion of size-dependent maternal effects on fecundity or egg viability has only limited effects on optimal size limits, unless the increase in fecundity with mass (“hyperallometry”) is very large. However, large hyperallometry in fecundity shifts the optimal size limit for biomass yield from the traditional minimum-length limit to a harvest slot. Fifth, harvest slots generally provide the best compromises among multiple objectives. We conclude that harvest slots, or more generally dome-shaped selectivity to harvest, can outperform the standard minimum-length selectivity. The exact configuration of optimal size limits crucially depends on objectives, local fishing pressure, the stock–recruitment function, and the density and size dependency of growth, mortality and fecundity.
Sonnenfleckenzeichnung Nr. 18548.
Zeichnung von Flecken und Fackelflächen zur Ermittlung der Sonnenaktivität am 03.10.1953, erstellt von Adolf Lemans
Creators: name: [s.n.]
Publisher: name: [s.n.]
Year: 1953

description: Bleistiftzeichnung mit Tinte und Farbstift überschrieben, erstellt als Projektionsbildzeichnung in der Eidgenössischen Sternwarte Zürich. Instrument: Kern-Merz-Refraktor.
Die Beobachtungen zu Einzelflecken und zu Sonnenfleckengruppen wurden mit Bleistift auf einem Vordruck eingetragen. Später wurden ergänzende Angaben aufgrund auswärtiger Beobachtungen direkt auf der Fleckenzeichnung hinzugefügt. Unter Umständen sind Angaben zu Protuberanzen vermerkt
Rapid semantic effects in immediate serial recall? Online experiment with dyslexic and non-dyslexic adults
Creators: name: Metz, Chloé
name: Savill, Nicola
Publisher: name: Open Science Framework
Year: 2022
Subjects: subject: Linguistics
subject: FOS: Languages and literature
subject: Cognitive Psychology
subject: Psycholinguistics and Neurolinguistics
subject: Social and Behavioral Sciences
subject: Psychology
subject: FOS: Psychology

description: There are well-established links between long-term language knowledge and verbal short-term memory (vSTM) with varied evidence that available semantic information either directly or indirectly supports phonological maintenance (e.g. Savill et al., 2018). Furthermore, a relatively stronger influence on semantic knowledge in short-term memory has been observed when phonological abilities are relatively weak (Savill, Cornelissen, Whiteley, Woollams, & Jefferies, 2019; in line with a primary systems perspective, e.g. Ueno et al., 2014). In Kowialiewski and Majerus (2018), long-term linguistic effects on vSTM are mostly non-strategic as they arise in a fast encoding running span procedure that prevented strategic processes. However, when examining the semantic effect of imageability, researchers found that it only appeared under slower presentation rates that would therefore allow for strategic encoding of the words. Imageability effects have been found in relation to phonological skills under standard immediate serial recall conditions (lists presented at a rate of one item per second) (Savill et al., 2019). Considering that the typical verbal short-term memory deficit observed in dyslexic individuals has been suggested to be related to less efficient encoding strategies (Kramer, Knee, & Delis, 2000), the present study will investigate the nature of lexical-semantic effects under speeded conditions in dyslexic and non-dyslexic individuals, and will assess ISR performance under different semantic and lexical manipulations across two experiments (words imageability, semantic relatedness, lexicality). The first experiment will assess short-term recall performance in an immediate serial recall (ISR) task with lists of high and low imageability words as well as nonwords lists presented under slow and fast presentation rates. In the second experiment, ISR lists will either be semantically related or unrelated.
Ladislavella terebra
Creators: name: Anistratenko, V. V.
name: Furyk, Yu. I.
name: Anistratenko, O. Yu.
name: Degtyarenko, E. V.
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Lymnaeidae
Ladislavella
Ladislavella terebra

description: Ladislavella terebra (Westerlund, 1885) D i s t r i b u t i o n. The species was recently found (Anistratenko et al., 2018: shell images are given in fig. 3, G, H) at a single locality 24 (fig. 1, table 1) close to the site where it has being recorded earlier by Korniushin (1999). Available data suggest the area of distribution of L. terebra in the Transcarpathian Region is restricted to the Khust district. In addition it was mentioned in the adjacent Ivano-Frankivsk and Lviv regions (Stadnichenko, 1968) under the name Galba occulta Jackiewicz, 1959; the latter is a junior synonym for Limnaea palustris var. terebra Westerlund, 1885 (see Vinarski, Glöer, 2008). Actual distribution of this species in Ukraine needs to be clarified by means of new samplings. Remarks. In the Transcarpathian L. terebra inhabits hard substrates in shallow natural stagnant reservoirs and artificial ponds in lowland zone about 170 m a. s. l. (table 2).
description: Published as part of Anistratenko, V. V., Furyk, Yu. I., Anistratenko, O. Yu. & Degtyarenko, E. V., 2019, A Review Of Species Diversity, Distribution And Ecology Of Freshwater Gastropod Molluscs Inhabiting The Ukrainian Transcarpathian, pp. 349-374 in Vestnik Zoologii 53 (5) on page 364, DOI: 10.2478/vzoo-2019-0033, http://zenodo.org/record/6949164
description: {"references": ["Anistratenko, V. V., Vinarski, M. V., Anistratenko, O. Yu., Furyk, Yu. I., Degtyarenko, E. V. 2018. New data on pond snails (Mollusca: Gastropoda: Lymnaeidae) inhabiting the Ukrainian Transcarpathian: diversity, distribution and ecology. Ecologica Montenegrina, 18, 1 - 14.", "Korniushin, A. V. 1999. New records of Lymnaea (Stagnicola) species in the West Ukraine (Gastropoda: Basommatophora: Lymnaeidae). Malakologische Abhandlungen / Staatliches Museum fur Tierkunde Dresden, 19, 281 - 286.", "Stadnichenko, A. P. 1968. Galba occulta Jackiewicz, 1959 (Gastropoda, Pulmonata) - new species of the fauna of the USSR. Zoologiceskij zhurnal, 47 (6), 942 - 944 [In Russian].", "Vinarski, M. V., Gloer, P. 2008. Taxonomical notes on Euro-Siberian freshwater molluscs. 3. Galba occulta Jackiewicz, 1959 is a junior synonym of Limnaea palustris var. terebra Westerlund, 1885. Mollusca, 26 (2), 175 - 185."]}
Sonnenfleckenzeichnung, unnummeriert.
Zeichnung von Flecken und Fackelflächen zur Ermittlung der Sonnenaktivität am 27.09.1953, erstellt am Sonnenobservatorium Kanzelhöhe, Kärnten
Creators: name: [s.n.]
Publisher: name: [s.n.]
Year: 1953

description: Bleistiftzeichnung mit Tinte und Bleistift, erstellt als Zeichnung nach eigener Vorlage im Sonnenobservatorium Kanzelhöhe in Sattendorf, Österreich. Instrument: Heliostat mit Refraktor Eigenbau (Öffnung 110mm, f = 1650mm, projiziertes Sonnenbild D = 25cm)
Protimesius Und.
Creators: name: Ázara, Ludson Neves De
name: Ferreira, Rodrigo Lopes
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Opiliones
Stygnidae
Protimesius

description: 151. Protimesius und. sp. 1
(Figs 33D, E)
Records in caves. CEARÁ. Santa Quitéria: Caverna E-16, id. by A.B. Kury, (MNRJ 9061); Caverna P-8, id. by A.B. Kury, (MNRJ 9060).
description: Published as part of Ázara, Ludson Neves De & Ferreira, Rodrigo Lopes, 2018, Annotated checklist of Gonyleptoidea (Opiliones: Laniatores) associated with Brazilian caves, pp. 1-107 in Zootaxa 4439 (1) on page 88, DOI: 10.11646/zootaxa.4439.1.1, http://zenodo.org/record/1298055
title: Фонетические тесты по русскому языку как иностранному. Элементарный и базовый уровень
title: Практикум
titleType: Subtitle
Creators: name: Пашковская С.С.
Publisher: name: Вузовское образование
Year: 2019

description: Практикум включает в себя фонетические тесты, которые отражают общий для всех национальностей фонетический минимум русского языка. Фонетические тесты (элементарный и базовый уровень) адресованы преподавателям русского языка как иностранного (РКИ) для работы на этапе предвузовской подготовки (подготовительные факультеты, центры подготовки иностранных учащихся как в России, так и за рубежом), в бакалавриате по направлению подготовки 45.03.02 «Лингвистика» (профиль «Теория и практика межкультурной коммуникации») на занятиях практического курса первого иностранного языка (русский язык), русского языка и культуры речи, культуры профессионального общения. Практикум может быть использован для проверки сформированности практических фонетических навыков на занятиях по дисциплине «Фонетические и интонационные особенности русской звучащей речи» учебного плана магистратуры по направлению 45.04.01 «Филология» (профиль «Русский язык как иностранный»), а также для самостоятельной работы иностранных учащихся.
Sonnenfleckenzeichnung unnummeriert, einen Zürcher Lückentag ergänzend.
Zeichnung von Flecken und Fackelflächen zur Ermittlung der Sonnenaktivität nach einer Projektion vom 23.12.1953, erstellt von Max Waldmeier am Astrophysikalischen Observatorium Tschuggen in Arosa
Creators: name: [s.n.]
Publisher: name: [s.n.]
Year: 1953

description: Bleistiftzeichnung mit Tinte und Farbstift überschrieben, erstellt als Projektionsbildzeichnung am Astrophysikalischen Observatorium Tschuggen in Arosa. Instrument: Visuelles Objektiv an der Coelostatenanlage (15 cm Öffnung und 224 cm Brennweite, projiziertes Sonnenbild D = 25 cm). - Instrumentennachweis gemäss früherem Tätigkeitsber., S. 4.
Die Beobachtungen zu Einzelflecken und zu Sonnenfleckengruppen wurden mit Bleistift auf einem Vordruck eingetragen
Protimesius Und.
Creators: name: Ázara, Ludson Neves De
name: Ferreira, Rodrigo Lopes
Publisher: name: Zenodo
Year: 2018
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Arachnida
Opiliones
Stygnidae
Protimesius

description: 152. Protimesius und. sp. 2
(Figs 33F, 34A, 41E, F)
Epigean records. BRAZIL. AMAPÁ. Municipality unspecified (Roewer 1913a); Gaivota; Serra do Navio (Pintoda-Rocha 1997). SURINAME. Municipality unspecified (Roewer 1923).
Records in caves. PARÁ. Canaã dos Carajás: Caverna 7, id. by L.N. Ázara, (ISLA 8071); Caverna 11, id. by L.N. Ázara, (ISLA 8013); Caverna 114, id. by L.N. Ázara, (ISLA 14400); Caverna 44, id. by L.N. Ázara, (ISLA 14401); Caverna 47, id. by L.N. Ázara, (ISLA 14402); Caverna 51, id. by L.N. Ázara, (ISLA 14403); Caverna 52, id. by L.N. Ázara, (ISLA 8079); Caverna 53, id. by L.N. Ázara, (ISLA 14404); Caverna 54, id. by L.N. Ázara, (ISLA 8032); Caverna 55, id. by L.N. Ázara, (ISLA 8092)... (see the complete localities records in table 1). Curionópolis: Caverna SL-2, id. by L.N. Ázara, (ISLA 14405); Caverna SL-3, id. by L.N. Ázara, (ISLA 14406); Caverna SL-7, id. by L.N. Ázara, (ISLA 14407); Caverna SL-8, id. by L.N. Ázara, (ISLA 14408); Caverna SL-11, id. by L.N. Ázara, (ISLA 14409); Caverna SL-13, id. by L.N. Ázara, (ISLA 14410); Caverna SL-14, id. by L.N. Ázara, (ISLA 14411); Caverna SL-15, id. by L.N. Ázara, (ISLA 14412); Caverna SL-22, id. by L.N. Ázara, (ISLA 14413); Caverna SL-25, id. by L.N. Ázara, (ISLA 13216)... (see the complete localities records in table 1). Parauapebas: Caverna GEM-1176, id. by L.N. Ázara, (ISLA 14414); GEM-1178, id. by L.N. Ázara, (ISLA 14415); Caverna GEM-1180, id. by L.N. Ázara, (ISLA 14416); Caverna GEM-1181, id. by L.N. Ázara, (ISLA 14417); Caverna GEM-1183, id. by L.N. Ázara, (ISLA 14418); Caverna GEM-1184, id. by L.N. Ázara, (ISLA 14419); Caverna GEM-1185, id. by L.N. Ázara, (ISLA 14420); Caverna GEM-1186, id. by L.N. Ázara, (ISLA 14421); Caverna GEM-1190, id. by L.N. Ázara, (ISLA 14422); Caverna GEM-1696, id. by L.N. Ázara, (ISLA 13070)... (see the complete localities records in table 1).
description: Published as part of Ázara, Ludson Neves De & Ferreira, Rodrigo Lopes, 2018, Annotated checklist of Gonyleptoidea (Opiliones: Laniatores) associated with Brazilian caves, pp. 1-107 in Zootaxa 4439 (1) on pages 88-89, DOI: 10.11646/zootaxa.4439.1.1, http://zenodo.org/record/1298055
Sonnenfleckenzeichnung Nr. 18595.
Zeichnung von Flecken und Fackelflächen zur Ermittlung der Sonnenaktivität am 24.12.1953, erstellt von Adolf Lemans
Creators: name: [s.n.]
Publisher: name: [s.n.]
Year: 1953

description: Bleistiftzeichnung mit Tinte und Farbstift überschrieben, erstellt als Projektionsbildzeichnung in der Eidgenössischen Sternwarte Zürich. Instrument: Kern-Merz-Refraktor.
Die Beobachtungen zu Einzelflecken und zu Sonnenfleckengruppen wurden mit Bleistift auf einem Vordruck eingetragen. Unter Umständen sind Angaben zu Protuberanzen vermerkt
Conformational changes and allosteric communications in human serum albumin due to ligand binding
Creators: name: Navjeet Ahalawat
name: Murarka, Rajesh K.
Publisher: name: Taylor & Francis
Year: 2015
Subjects: Hematology
Biological Sciences
Chemistry
Biotechnology
Cell Biology
Physics
Biochemistry
Biophysics

description: It is well recognized that knowledge of structure alone is not sufficient to understand the fundamental mechanism of biomolecular recognition. Information of dynamics is necessary to describe motions involving relevant conformational states of functional importance. We carried out principal component analysis (PCA) of structural ensemble, derived from 84 crystal structures of human serum albumin (HSA) with different ligands and/or different conditions, to identify the functionally important collective motions, and compared with the motions along the low-frequency modes obtained from normal mode analysis of the elastic network model (ENM) of unliganded HSA. Significant overlap is observed in the collective motions derived from PCA and ENM. PCA and ENM analysis revealed that ligand selects the most favored conformation from accessible equilibrium structures of unliganded HSA. Further, we analyzed dynamic network obtained from molecular dynamics simulations of unliganded HSA and fatty acids- bound HSA. Our results show that fatty acids-bound HSA has more robust community network with several routes to communicate among different parts of the protein. Critical nodes (residues) identified from dynamic network analysis are in good agreement with allosteric residues obtained from sequence-based statistical coupling analysis method. This work underscores the importance of intrinsic structural dynamics of proteins in ligand recognition and can be utilized for the development of novel drugs with optimum activity.
Sonnenfleckenzeichnung Nr. 18523.
Zeichnung von Flecken und Fackelflächen zur Ermittlung der Sonnenaktivität am 05.09.1953, erstellt von Helmut Müller
Creators: name: [s.n.]
Publisher: name: [s.n.]
Year: 1953

description: Bleistiftzeichnung mit Tinte und Farbstift überschrieben, erstellt als Projektionsbildzeichnung in der Eidgenössischen Sternwarte Zürich. Instrument: Kern-Merz-Refraktor.
Die Beobachtungen zu Einzelflecken und zu Sonnenfleckengruppen wurden mit Bleistift auf einem Vordruck eingetragen. Später wurden ergänzende Angaben aufgrund auswärtiger Beobachtungen direkt auf der Fleckenzeichnung hinzugefügt. Unter Umständen sind Angaben zu Protuberanzen vermerkt
title: On the Degree of Communication in Parallel Communicating Finite Automata Systems
Creators: name: Mitrana, Victor
Publisher: name: Institut für Informatik, Justus-Liebig-Universität Giessen
Year: 2000

description: A parallel communicating finite automata system consists of several finite automata
working independently but communicating states with each other by request. We introduce
a dynamical descriptional complexity measure for all variants of parallel communicating
finite automata systems and discuss some computational aspects with respect
to this measure. The degree of communication of a given automata system for a given
word expresses the minimal number of communications necessary to recognize the word.
The degree of communication of an automata system is taken as the maximal degree of
communication for all words recognized by the system, if the degree of communication
for every word is bounded by a constant, or infinite otherwise. We discuss here the
possibility of algorithmically computing the degree of communication for a word, of an
automata system or for a language.
description: Journal of Automata, Languages and Combinatorics, Volume 5, Number 3, 2000, 301-314
Radix Montfort 1810
Creators: name: Anistratenko, V. V.
name: Furyk, Yu. I.
name: Anistratenko, O. Yu.
name: Degtyarenko, E. V.
Publisher: name: Zenodo
Year: 2019
Subjects: Biodiversity
Taxonomy
Animalia
Mollusca
Gastropoda
Lymnaeidae
Radix

description: Genus Radix Montfort, 1810 Type species: Radix auriculatus Montfort, 1810 = Helix auricularia Linnaeus, 1758
description: Published as part of Anistratenko, V. V., Furyk, Yu. I., Anistratenko, O. Yu. & Degtyarenko, E. V., 2019, A Review Of Species Diversity, Distribution And Ecology Of Freshwater Gastropod Molluscs Inhabiting The Ukrainian Transcarpathian, pp. 349-374 in Vestnik Zoologii 53 (5) on page 364, DOI: 10.2478/vzoo-2019-0033, http://zenodo.org/record/6949164
title: On the Diameter of Various Classes of H Systems
Creators: name: Păun, Andrei
Publisher: name: Institut für Informatik, Justus-Liebig-Universität Giessen
Year: 2000

description: We investigate the complexity of various classes of H systems from the point of view of
the length of their Splicing rules. Specifically, we consider the diameter of an H system,
the quadruple of integers representing the maximal length of strings in the rules of the
system. We systematically examine the classes of controlled and distributed H systems
from the monograph [8]. Improvements of the results in [8] with reSpect to the measure
called diameter are obtained.
description: Journal of Automata, Languages and Combinatorics, Volume 5, Number 3, 2000, 315-324
Sonnenfleckenzeichnung unnummeriert, einen Zürcher Lückentag ergänzend.
Zeichnung von Flecken und Fackelflächen zur Ermittlung der Sonnenaktivität am 18.10.1953, erstellt am Sonnenobservatorium Kanzelhöhe, Kärnten
Creators: name: [s.n.]
Publisher: name: [s.n.]
Year: 1953

description: Bleistiftzeichnung mit Tinte und Bleistift, erstellt als Zeichnung nach eigener Vorlage im Sonnenobservatorium Kanzelhöhe in Sattendorf, Österreich. Instrument: Heliostat mit Refraktor Eigenbau (Öffnung 110mm, f = 1650mm, projiziertes Sonnenbild D = 25cm)
Archiving and Alerts Software Subsystem Design
Creators: name: Papadakis, Stefanos
Publisher: name: Zenodo
Year: 2024

description: The purpose of this document is to describe in detail the architecture of the Archiving and Alerts subsystem of the ARGOS system. It provides a vertical view of all the software and hardware components needed and their respective structure, in order to build a robust and scalable system that can cope with the requirementsof ARGOS and also be capable to serve the produced data to the community efficiently and in a timely fashion.