cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 3 of Activity budget and gut microbiota stability and flexibility across reproductive states in wild capuchin monkeys in a seasonal tropical dry forest
Creators: name: Webb, Shasta E.
name: Orkin, Joseph D.
name: Williamson, Rachel E.
name: Melin, Amanda D.
Publisher: name: figshare
Year: 2024
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Additional file 3. Protocol for extracting DNA from fecal samples.
EXPERIENCE IN SURGICAL TREATMENT OF ASCENDING AORTIC ANEURYSMS
Creators: name: Rakhimberganov, Khusanboy
Publisher: name: Zenodo
Year: 2025

description: The diagnosis and surgical management of ascending aortic aneurysms remain among the most challenging aspects of modern cardiovascular surgery. In 66.6% of cases, a standard one-stage Bentall procedure was performed. Our experience also includes cases of ascending aortic aneurysm associated with coarctation, and we aim to present our surgical approach and outcomes.
Quantum dynamics simulations beyond the coherence time on NISQ hardware by variational Trotter compression
Creators: name: Berthusen, Noah F.
name: Trevisan, Thaís V.
name: Iadecola, Thomas
name: Orth, Peter P.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Quantum Physics (quant-ph)
subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: We demonstrate a post-quench dynamics simulation of a Heisenberg model on present-day IBM quantum hardware that extends beyond the coherence time of the device. This is achieved using a hybrid quantum-classical algorithm that propagates a state using Trotter evolution and then performs a classical optimization that effectively compresses the time-evolved state into a variational form. When iterated, this procedure enables simulations to arbitrary times with an error controlled by the compression fidelity and a fixed Trotter step size. We show how to measure the required cost function, the overlap between the time-evolved and variational states, on present-day hardware, making use of several error mitigation methods. In addition to carrying out simulations on real hardware, we investigate the performance and scaling behavior of the algorithm with noiseless and noisy classical simulations. We find the main bottleneck in going to larger system sizes to be the difficulty of carrying out the optimization of the noisy cost function.
description: 11 pages, 9 figures
Additional file 4 of Activity budget and gut microbiota stability and flexibility across reproductive states in wild capuchin monkeys in a seasonal tropical dry forest
Creators: name: Webb, Shasta E.
name: Orkin, Joseph D.
name: Williamson, Rachel E.
name: Melin, Amanda D.
Publisher: name: figshare
Year: 2024
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Additional file 4. Protocol for purifying DNA extracted from fecal samples.
A periodicity theorem for extensions of Weyl modules
Creators: name: Maliakas, Mihalis
name: Stergiopoulou, Dimitra-Dionysia
Publisher: name: arXiv
Year: 2022
Subjects: subject: Representation Theory (math.RT)
subject: Rings and Algebras (math.RA)
subject: FOS: Mathematics
subject: 20G05, 20C30, 05E10

description: In this paper we study periodicity phenomena for modular extensions between Weyl modules and between Weyl and simple modules of the general linear group that are associated to adding a power of the characteristic to the first parts of the involved partitions.
description: Referee's comments incorporated. To appear in Mathematische Zeitschrift
Superfluid excitations in rotating two-dimensional ring traps
Creators: name: Tomishiyo, Guilherme
name: Madeira, Lucas
name: Caracanhas, Mônica A.
Publisher: name: arXiv
Year: 2022
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: FOS: Physical sciences

description: We studied a rotating Bose-Einstein condensate confined in ring trap configurations that can be produced starting with a bubble trap confinement, approximated by a Mexican hat and shifted harmonic oscillator potentials. Using a variational technique and perturbation theory, we determined the vortex configurations in this system by varying the interparticle interaction and the angular velocity of the atomic cloud. We found that the phase diagram of the system has macrovortex structures for small positive values of the interaction parameter, and the charge of the central vortex increases with rotation. Strengthening the atomic interaction makes the macrovortex unstable, and it decays into multiple singly-charged vortices that arrange themselves in a lattice configuration. We also look for experimentally realizable methods to determine the vortex configuration without relying upon absorption imaging since the structures are not always visible in the latter. More specifically, we study how the vortex distribution affects the collective modes of the condensate by solving the Gross-Pitaevskii equation numerically and by analytical predictions using the sum-rule approach for the frequencies of the modes. These results reveal important signatures to characterize the macrovortices and vortex lattice transitions in the experiments.
description: 20 pages, 15 figures
КУЧЛИ ТАЪСИР ҚИЛУВЧИ ЁКИ ЗАҲАРЛИ МОДДАЛАР БИЛАН МУОМАЛАДА БЎЛИШ ҚОИДАЛАРИНИ БУЗИШНИ КВАЛИФИКАЦИЯ ҚИЛИШНИНГ АЙРИМ МАСАЛАЛАРИ
Creators: name: Хайдаров, Мирсаид
Publisher: name: Zenodo
Year: 2025

description: Мамлакатимиз суд-ҳуқуқ тизимида амалга оширилаётган кенг қамровли ислоҳотларнинг асосий йўналишларидан бири бу жиноят қонунчилигини янада либераллаштириш ва такомиллаштириш ҳисобланади. Зеро, бу борада амалга оширилаётган ислоҳотларнинг натижаси ўлароқ Ўзбекистон Республикасининг 2024 йил 5 октябрдаги “Ўзбекистон Республикасининг Жиноят, Жиноят-процессуал кодексларига ҳамда Ўзбекистон Республикасининг Маъмурий жавобгарлик тўғрисидаги кодексига гиёҳвандлик воситаларининг, улар аналогларининг ёки психотроп моддаларнинг, шунингдек кучли таъсир қилувчи ва заҳарли моддаларнинг қонунга хилоф муомаласига қарши курашишга қаратилган ўзгартириш ва қўшимчалар киритиш ҳақида”ги ЎРҚ–971-сон қонуни қабул қилинди. Мазкур қонун билан кучли таъсир қилувчи ва заҳарли моддаларнинг қонунга хилоф муомаласи учун жавобгарликни назарда тутувчи нормалари такомиллаштирилди.
Geometrical characterization of healthy red blood cells using digital holographic microscopy and parametric shape models for biophysical studies and diagnostic applications
Creators: name: Bhabhor, Gaurav D.
name: Patel, Chetna
name: Chhillar, Nishant
name: Anand, Arun
name: Lad, Kirit N.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Biological Physics (physics.bio-ph)
subject: FOS: Physical sciences

description: Modeling of the red blood cell (RBC) shape is an integral part of the experimental and computer simulation investigations of light scattering by these cells for fundamental studies as well as diagnostic applications in techniques like cytometry and quantitative phase imaging. In the present work, a comprehensive study of the geometrical characterization of healthy human RBCs using digital holographic microscopy (DHM) and six frequently employed parametric shape models is reported. It is shown that the comparison of the optical phase profiles, and the thickness profiles given by the models with the DHM results gives a better judgment of the appropriateness of the parametric shape models. It is also shown that the RBC parametric models offer a simpler solution to RI-thickness decoupling problem in QPI methods. Results of geometrical characterization of 500 healthy RBCs in terms of volume, surface area (SA), and sphericity index (SI) led to the classification of the parametric models in two categories based on the nature of variation of these quantities with the cell diameter. In light of the variability of the healthy RBC shapes, our findings suggest that the parametric models exhibiting a negative correlation between the SI and the cell diameter would provide more reliable estimates of the RBC parameters in diagnostic applications. Statistical distributions and descriptive statistics of the RBC volume, SA and SI serve as a guide for the assessment of the capability of the studied parametric models to give a reliable account of the variability of the healthy RBC shape and size.
description: 21 pages, 10 figures
Additional file 5 of Activity budget and gut microbiota stability and flexibility across reproductive states in wild capuchin monkeys in a seasonal tropical dry forest
Creators: name: Webb, Shasta E.
name: Orkin, Joseph D.
name: Williamson, Rachel E.
name: Melin, Amanda D.
Publisher: name: figshare
Year: 2024
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Additional file 5: Table S3. Generalized linear mixed model outputs for resting and foraging behaviours.
The Linkages between Air Quality Management Related Research and Sustainable Development in Thailand
Creators: name: Rakjit Kanlayanatam
name: Ananya Kongsin
name: Suthirat Kittipongvises
Publisher: name: Thai Society of Higher Education Institutes on Environment
Year: 2022
Subjects: Air Quality Management
Climate Change
Particulate Matter
Sustainable Development Goals

description: EnvironmentAsia, 15, 2, 1-14
Energy exchange between electrons and ions in ion temperature gradient turbulence
Creators: name: Kato, T.
name: Sugama, H.
name: Watanabe, T. -H.
name: Nunami, M.
Publisher: name: arXiv
Year: 2024
Subjects: subject: Plasma Physics (physics.plasm-ph)
subject: FOS: Physical sciences

description: Microturbulence in magnetic confined plasmas contributes to energy exchange between particles of different species as well as the particle and heat fluxes. Although the effect of turbulent energy exchange has not been considered significant in previous studies, it is anticipated to have a greater impact than collisional energy exchange in low collisional plasmas such as those in future fusion reactors. In this study, gyrokinetic simulations are performed to evaluate the energy exchange in ion temperature gradient (ITG) turbulence. The energy exchange due to the ITG turbulence mainly consists of the cooling of ions in the $\nabla B$-curvature drift motion and the heating of electrons streaming along a field line. It is found that the ITG turbulence transfers energy from ions to electrons regardless of whether the ions or electrons are hotter, which is in marked contrast to the energy transfer by Coulomb collisions. This implies that the ITG turbulence should be suppressed from the viewpoint of sustaining the high ion temperature required for fusion reactions since it prevents energy transfer from alpha-heated electrons to ions as well as enhancing ion heat transport toward the outside of the reactor. Furthermore, linear and nonlinear simulation analyses confirm the feasibility of quasilinear modeling for predicting the turbulent energy exchange in addition to the particle and heat fluxes.
description: 13pages, 4 figures
Marine Heatwaves in the Mediterranean Sea: A Literature Review
Creators: name: Darmaraki, Sofia
Publisher: name: Zenodo
Year: 2025

description: Talk online, in the framework of the climate coffee series. 

The recording of the talk is available here: https://youtu.be/6Fg5TYB76vA 

Marine heatwaves (MHWs) are prolonged periods of exceptionally warm temperatures in the ocean, which have forced profound transformations in marine biodiversity and socio-economic systems globally over the last decades. The Mediterranean basin, a highly vulnerable area to climate change, has been particularly affected as a marginal sea, experiencing multifaceted changes due to these events. This presentation provides an overview of current understanding regarding the evolution of MHWs in the Mediterranean basin, from the past to the future, based on a recent literature review. Adopting an interdisciplinary perspective, we summarize the key driving mechanisms of MHWs, known feedbacks and impacts on various marine organisms and local economies while discussing ongoing challenges in their detection, characterization and monitoring.

Our speaker

Sofia Darmaraki is a researcher at FORTH, the Coastal & Marine Research Laboratory, Institute of Applied and Computational Mathematics, Foundation for Research and Technology, Hellas located in Crete, Greece. In October 2024, she published a paper on MHW. Sofia's research interests are the following: Physical oceanography and climate science, with a focus on ocean and climate extremes, their drivers, and uncertainties in future projections. Fascinated by large-scale ocean circulation response to climate change, polar ocean dynamics and air-sea interactions, using numerical models and observational systems.

What is a Climate Coffee?

#climatecoffees are short (circa 40 min: 20 min talk + 20 min Q&A), relaxed meetings for scientists to share ideas, discuss methods, and communicate new results. They are open to speakers of all seniority; we especially encourage early-career scientists to become speakers. The Coffees are an exciting opportunity for scientists to build a network and disseminate recent results peer-to-peer. We invite researchers from across the climate science community to join us for this series of regular online knowledge exchange events.
Implementation of self-consistent MGGA functionals in augmented plane wave based methods
Creators: name: Doumont, Jan
name: Tran, Fabien
name: Blaha, Peter
Publisher: name: arXiv
Year: 2021
Subjects: subject: Materials Science (cond-mat.mtrl-sci)
subject: Other Condensed Matter (cond-mat.other)
subject: FOS: Physical sciences

description: Functionals of the meta-generalized gradient approximation (MGGA) are nowadays widely used in chemistry and solid-state physics for the simulation of electronic systems like molecules, solids, or surfaces. Due to their dependency on the kinetic energy density, they are in principle more accurate than GGA functionals for various properties (geometry, binding energy, electronic structure, etc.), while being nearly as fast since they are still of the semilocal form. Thus, when an accuracy better than GGA is required, one may consider using a MGGA instead of the much more costly hybrid functionals or methods like the random-phase approximation or $GW$. In this work, the self-consistent implementation of MGGA functionals in APW based methods is presented. Technical aspects of the implementation are discussed, and calculations of band gaps, lattice constants, and magnetic moments are presented in order to validate our implementation. To test the changes of the electron density due to a MGGA, the electric field gradient on transition-metal atoms is calculated.
Additional file 6 of Activity budget and gut microbiota stability and flexibility across reproductive states in wild capuchin monkeys in a seasonal tropical dry forest
Creators: name: Webb, Shasta E.
name: Orkin, Joseph D.
name: Williamson, Rachel E.
name: Melin, Amanda D.
Publisher: name: figshare
Year: 2024
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Additional file 6: Table S4. Generalized linear mixed model outputs for richness and alpha diversity among fecal samples across reproductive states and PERMANOVA for Bray-Curtis dissimilarity among fecal samples.
HiSSNet: Sound Event Detection and Speaker Identification via Hierarchical Prototypical Networks for Low-Resource Headphones
Creators: name: Shashaank, N
name: Banar, Berker
name: Izadi, Mohammad Rasool
name: Kemmerer, Jeremy
name: Zhang, Shuo
name: Huang, Chuan-Che
Publisher: name: arXiv
Year: 2023
Subjects: subject: Machine Learning (cs.LG)
subject: Sound (cs.SD)
subject: Audio and Speech Processing (eess.AS)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering

description: Modern noise-cancelling headphones have significantly improved users' auditory experiences by removing unwanted background noise, but they can also block out sounds that matter to users. Machine learning (ML) models for sound event detection (SED) and speaker identification (SID) can enable headphones to selectively pass through important sounds; however, implementing these models for a user-centric experience presents several unique challenges. First, most people spend limited time customizing their headphones, so the sound detection should work reasonably well out of the box. Second, the models should be able to learn over time the specific sounds that are important to users based on their implicit and explicit interactions. Finally, such models should have a small memory footprint to run on low-power headphones with limited on-chip memory. In this paper, we propose addressing these challenges using HiSSNet (Hierarchical SED and SID Network). HiSSNet is an SEID (SED and SID) model that uses a hierarchical prototypical network to detect both general and specific sounds of interest and characterize both alarm-like and speech sounds. We show that HiSSNet outperforms an SEID model trained using non-hierarchical prototypical networks by 6.9 - 8.6 percent. When compared to state-of-the-art (SOTA) models trained specifically for SED or SID alone, HiSSNet achieves similar or better performance while reducing the memory footprint required to support multiple capabilities on-device.
Additional file 7 of Activity budget and gut microbiota stability and flexibility across reproductive states in wild capuchin monkeys in a seasonal tropical dry forest
Creators: name: Webb, Shasta E.
name: Orkin, Joseph D.
name: Williamson, Rachel E.
name: Melin, Amanda D.
Publisher: name: figshare
Year: 2024
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: Additional file 7: Table S5. Differential abundance of phyla and genera using DESeq2 and adjusted p-values.
Very Hairy Inflation
Creators: name: D'Amico, Guido
name: Kaloper, Nemanja
name: Westphal, Alexander
Publisher: name: arXiv
Year: 2021
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We revisit the rollercoaster cosmology based on multiple stages of monodromy inflation. Working within the framework of effective flux monodromy field theory, we include the full range of strong coupling corrections to the inflaton sector. We find that flattened potentials $V \sim ϕ^p + \ldots$ with $p \lesssim 1/2$, limited to $ N \lesssim 25 - 40$ efolds in the first stage of inflation, continue to fit the CMB. They yield $0.96 \lesssim n_s \lesssim 0.97$, and produce relic gravity waves with $0.006 \lesssim r \lesssim 0.035$, in full agreement with the most recent bounds from BICEP/{\it Keck}. The nonlinear derivative corrections generated by strong dynamics in EFT also lead to equilateral non-Gaussianity $f_{NL}^{eq} \simeq {\cal O}(1) - {\cal O}(10)$, close to the current observational bounds. Finally, in multi-stage rollercoaster, an inflaton-hidden sector $U(1)$ coupling can produce a tachyonic chiral vector background, which converts rapidly into tensors during the short interruption by matter domination. The produced stochastic gravity waves are chiral, and so they may be clearly identifiable by gravity wave instruments like LISA, Big Bang Observatory, Einstein Telescope, NANOgrav or SKA, depending on the precise model realization. We also point out that the current attempts to resolve the $H_0$ tension using early dark energy generically raise $n_s$. This may significantly alter the impact of BICEP/{\it Keck} data on models of inflation.
description: 25+1 pages LaTeX, 8 figures. v2: Minor changes, references added, published in PRD
Get in the Groove with Funky Time – The Most Exciting Game Awaits!
Creators: name: Amarasinghe, Asanka
Publisher: name: Zenodo
Year: 2025

description: Looking for a game that delivers high-energy fun, stunning visuals, and endless excitement? funky time casino app download is your ticket to a world of rhythm, neon lights, and thrilling gameplay! Whether you love retro aesthetics, interactive features, or the thrill of big rewards, this game is designed to keep you entertained from start to finish.

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Funky Time offers an easy-to-learn experience with simple mechanics. Just spin the reels, match the right symbols, and trigger bonus rounds for extra excitement. The fast-paced nature of the game ensures that no two rounds feel the same, making every session fresh and thrilling.

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Cyber Security aboard Micro Aerial Vehicles: An OpenTitan-based Visual Communication Use Case
Creators: name: Ciani, Maicol
name: Bonato, Stefano
name: Psiakis, Rafail
name: Garofalo, Angelo
name: Valente, Luca
name: Sugumar, Suresh
name: Giusti, Alessandro
name: Rossi, Davide
name: Palossi, Daniele
Publisher: name: arXiv
Year: 2023
Subjects: subject: Cryptography and Security (cs.CR)
subject: Systems and Control (eess.SY)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: B.6; B.7; I.4

description: Autonomous Micro Aerial Vehicles (MAVs), with a form factor of 10cm in diameter, are an emerging technology thanks to the broad applicability enabled by their onboard intelligence. However, these platforms are strongly limited in the onboard power envelope for processing, i.e., less than a few hundred mW, which confines the onboard processors to the class of simple microcontroller units (MCUs). These MCUs lack advanced security features opening the way to a wide range of cyber security vulnerabilities, from the communication between agents of the same fleet to the onboard execution of malicious code. This work presents an open source System on Chip (SoC) design that integrates a 64 bit Linux capable host processor accelerated by an 8 core 32 bit parallel programmable accelerator. The heterogeneous system architecture is coupled with a security enclave based on an open source OpenTitan root of trust. To demonstrate our design, we propose a use case where OpenTitan detects a security breach on the SoC aboard the MAV and drives its exclusive GPIOs to start a LED blinking routine. This procedure embodies an unconventional visual communication between two palm sized MAVs: the receiver MAV classifies the LED state of the sender (on or off) with an onboard convolutional neural network running on the parallel accelerator. Then, it reconstructs a high-level message in 1.3s, 2.3 times faster than current commercial solutions.
Anyon Quantum Dimensions from an Arbitrary Ground State Wave Function
Creators: name: Liu, Shang
Publisher: name: arXiv
Year: 2023
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Realizing topological orders and topological quantum computation is a central task of modern physics. An important but notoriously hard question in this endeavor is how to diagnose topological orders that lack conventional order parameters. A breakthrough in this problem is the discovery of topological entanglement entropy, which can be used to detect nontrivial topological order from a ground state wave function, but is far from enough for fully determining the topological order. In this work, we take a key step further in this direction: We propose a simple entanglement-based protocol for extracting the quantum dimensions of all anyons from a single ground state wave function in two dimensions. The choice of the space manifold and the ground state is arbitrary. This protocol is both validated in the continuum and verified on lattices, and we anticipate it to be realizable in various quantum simulation platforms.
description: Published version. 15 pages, 7 captioned figures
RottmanSupplementalMaterial_rev – Supplemental material for Specks of Dirt and Tons of Pain: Dosage Distinguishes Impurity From Harm
Creators: name: Rottman, Joshua
name: Young, Liane
Publisher: name: SAGE Journals
Year: 2019
Subjects: subject: 110904 Neurology and Neuromuscular Diseases
subject: FOS: Clinical medicine
subject: 170199 Psychology not elsewhere classified
subject: FOS: Psychology
subject: 110319 Psychiatry (incl. Psychotherapy)
subject: Neuroscience

description: Supplemental material, RottmanSupplementalMaterial_rev for Specks of Dirt and Tons of Pain: Dosage Distinguishes Impurity From Harm by Joshua Rottman and Liane Young in Psychological Science
Additional file 1 of Multiscale protein networks systematically identify aberrant protein interactions and oncogenic regulators in seven cancer types
Creators: name: Song, Won-Min
name: Elmas, Abdulkadir
name: Farias, Richard
name: Xu, Peng
name: Zhou, Xianxiao
name: Hopkins, Benjamin
name: Huang, Kuan-lin
name: Zhang, Bin
Publisher: name: figshare
Year: 2024
Subjects: subject: Biophysics
subject: Biochemistry
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Cancer
subject: Plant Biology

description: Additional file 1. Supplemental Results; Methods; Supplemental Figure Legend; Fig. S1. The overall workflow of pan-cancer proteome network analysis; Fig. S2. Enriched hallmark pathways in DEP signatures; Fig. S3.. Overview of differentially expressed proteins; Fig. S4.. Predictive power of mRNA and protein expressions of proteome-specific DEPs; Fig. S5.. Subnetworks of the top protein modules in each cancer type in Fig. 1E; Fig. S6.. Preserved or proteome-specific co-expressed protein modules in the respective transcriptome; Fig. S7.. Workflow of the Pan-cancer protein interaction community (PCPIC) analysis; Fig. S8.. Most enriched pathways in PCPIC cores; Fig. S9.. Cross-talk across distinct PCPICs; Fig. S10.. Top hub genes in protein co-expression networks; Fig. S11.. Enrichment of various protein signatures in the cancer essential genes identified by the in vitro screening in the Archilles database; Fig. S12.. Comparison of proteome (PR) and transcriptome (TX) network connectivity in each cancer type; Fig. S13.. Enriched hallmark pathways in proteome- (PR) or transcriptome-(TX) specific hub genes, or shared hub genes in PR and TX; Fig. S14.. Validated drivers by gene perturbations signatures in cancer cells from LINCS database; Fig. S15.. Evaluation of TCGA Pan-cancer atlas (PanCanAtlas) and CPTAC transcriptome (TX) cohorts for proteome module preservation analysis; Supplemental Table Legend; Table S1. Description of the cancer proteome datasets; Table S2. Summary of differentially expressed protein (DEP) signatures; Table S3. The number of differentially expressed proteins (DEPs) in each cancer type and the number of proteome specific DEPs, i.e., DEPs without differential expression at the mRNA level in the respective tumor transcriptome; Table S4. Numbers of protein and mRNA modules by MEGENA; Table S5. List of core proteins in Pan-cancer protein interaction communities (PCPICs)
Black-box Prompt Tuning with Subspace Learning
Creators: name: Zheng, Yuanhang
name: Tan, Zhixing
name: Li, Peng
name: Liu, Yang
Publisher: name: arXiv
Year: 2023
Subjects: subject: Computation and Language (cs.CL)
subject: Artificial Intelligence (cs.AI)
subject: FOS: Computer and information sciences

description: Black-box prompt tuning employs derivative-free optimization algorithms to learn prompts within low-dimensional subspaces rather than back-propagating through the network of Large Language Models (LLMs). Recent studies reveal that black-box prompt tuning lacks versatility across tasks and LLMs, which we believe is related to the suboptimal choice of subspaces. In this paper, we introduce Black-box prompt tuning with Subspace Learning (BSL) to enhance the versatility of black-box prompt tuning. Based on the assumption that nearly optimal prompts for similar tasks reside in a common subspace, we propose identifying such subspaces through meta-learning on a collection of similar source tasks. Consequently, for a target task that shares similarities with the source tasks, we expect that optimizing within the identified subspace can yield a prompt that performs well on the target task. Experimental results confirm that our BSL framework consistently achieves competitive performance across various downstream tasks and LLMs.
To be(tween) or not to be(tween)? Combining between- and within-subjects design characteristics in experimental auctions
Creators: name: Cerjak, Marija
name: Juračak, Josip
name: Kovačić, Damir
name: Drichoutis, Andreas
Publisher: name: Zenodo
Year: 2024

description: The presentation of the preliminary results of the study on consumer preferences for organic and local apples by combining between- and within-subject design characteristics in a second price auction.
MIRZO ULUG'BEK ILMIY IJODINING JAHON TAMADDUNIDAGI O'RNI
Creators: name: Qahhorov, Muhammadali
Publisher: name: Zenodo
Year: 2025

description: Ushbu maqolada Mirzo Ulug‘bekning hayoti va ijtimoiy-siyosiy faoliyatining ayrim muhim taraflari yoritilgan. Uning ilmiy merosi, jahon madaniyati va olimlar ichida tutgan o‘rnini ifodalash hamda “Ziji sultoniy” asari haqida keng yoritilgan. Maqolada Ulug‘bekning hukmdorlik va olimlik jihatlari tafsilotlar orqali bayon qilingan. Uning jahon miqyosida tutgan o‘rni va unga bo‘lgan e’tibor chuqur o‘rganilgan.
Rigidity of inverse problems for nonlinear elliptic equations on manifolds
Creators: name: Feizmohammadi, Ali
name: Kian, Yavar
name: Oksanen, Lauri
Publisher: name: arXiv
Year: 2023
Subjects: subject: Analysis of PDEs (math.AP)
subject: FOS: Mathematics
subject: 35R30, 35J91

description: We consider the inverse problem of determining coefficients appearing in semilinear elliptic equations stated on Riemannian manifolds with boundary given the knowledge of the associated Dirichlet-to-Neumann map. We begin with a negative answer to this problem. Owing to this obstruction, we consider a new formulation of our inverse problem in terms of a rigidity problem. Precisely, we consider cases where the Dirichlet-to-Neumann map of a semilinear equation coincides with the one of a linear equation and ask whether this implies that the equation must indeed be linear. We give a positive answer to this rigidity problem under some assumptions imposed to the Riemannian manifold and to the semilinear term under consideration.
Financial Model User Guide - Advanced Financial Model for Renewable Energy Investments
Creators: name: Renewables Valuation Institute
Publisher: name: Zenodo
Year: 2025
Subjects: Solar
financial modeling
Project Finance
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description: A comprehensive user guide for RVI’s advanced Solar project-finance model, covering developer vs. investor workflows, detailed quarterly cashflows & dashboards, DSRA/MMRA logic, and VBA walkthroughs.
Convolutional neural networks for large-scale dynamical modeling of itinerant magnets
Creators: name: Cheng, Xinlun
name: Zhang, Sheng
name: Nguyen, Phong C. H.
name: Azarfar, Shahab
name: Chern, Gia-Wei
name: Baek, Stephen S.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Complex spin textures in itinerant electron magnets hold promises for next-generation memory and information technology. The long-ranged and often frustrated electron-mediated spin interactions in these materials give rise to intriguing localized spin structures such as skyrmions. Yet, simulations of magnetization dynamics for such itinerant magnets are computationally difficult due to the need for repeated solutions to the electronic structure problems. We present a convolutional neural network (CNN) model to accurately and efficiently predict the electron-induced magnetic torques acting on local spins. Importantly, as the convolutional operations with a fixed kernel (receptive field) size naturally take advantage of the locality principle for many-electron systems, CNN offers a scalable machine learning approach to spin dynamics. We apply our approach to enable large-scale dynamical simulations of skyrmion phases in itinerant spin systems. By incorporating the CNN model into Landau-Lifshitz-Gilbert dynamics, our simulations successfully reproduce the relaxation process of the skyrmion phase and stabilize a skyrmion lattice in larger systems. The CNN model also allows us to compute the effective receptive fields, thus providing a systematic and unbiased method for determining the locality of the original electron models.
Fermion-parity qubit in a proximitized double quantum dot
Creators: name: Geier, Max
name: Souto, Rubén Seoane
name: Schulenborg, Jens
name: Asaad, Serwan
name: Leijnse, Martin
name: Flensberg, Karsten
Publisher: name: arXiv
Year: 2023
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Bound states in quantum dots coupled to superconductors can be in a coherent superposition of states with different electron number but with the same fermion parity. Electrostatic gating can tune this superposition to a sweet spot, where the quantum dot has the same mean electric charge independent of its electron-number parity. Here, we propose to encode quantum information in the local fermion parity of two tunnel-coupled quantum dots embedded in a Josephson junction. At the sweet spot, the qubit states have zero charge dipole moment. This protects the qubit from dephasing due to charge noise acting on the potential of each dot, as well as fluctuations of the (weak) inter-dot tunneling. At weak inter-dot tunneling, relaxation is suppressed because of disjoint qubit states. On the other hand, for strong inter-dot tunneling the system is protected against noise affecting each quantum dot separately (energy level noise, dot-superconductor tunneling fluctuations, and hyperfine interactions). Finally, we describe initialization and readout as well as single-qubit and two-qubit gates by pulsing gate voltages.
description: 20 pages, 8 figures; V2: published version
Thermal transport controlled by intra- and inter-dot Coulomb interactions in sequential and cotunneling serially-coupled double quantum dots
Creators: name: Pirot, Bashdar Rahman
name: Abdullah, Nzar Rauf
name: Manolescu, Andrei
name: Gudmundsson, Vidar
Publisher: name: arXiv
Year: 2022
Subjects: subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: FOS: Physical sciences

description: We study thermoelectric transport through a serial double quantum dot (DQD) coupled to two metallic leads with different thermal energies. We take into account the electron sequential and cotunneling effects via different master equation approaches. In the absence of intra- and inter-dot Coulomb interactions, a small peak in thermoelectric and heat currents is found for $E_{\rm L} \text{=} E_{\rm R}$ indicating the Coulomb blockade DQD regime, where $E_{\rm L}(E_{\rm R})$ is the energy of the state of the left(right) quantum dot. In the presence of intra- and inter-dot Coulomb interactions with strengths U$_{\rm intra}$, and U$_{\rm inter}$, respectively, avoided crossings or resonance energies between the intra- and the inter-dot two-electron states, 2ES, are found. These resonances induce extra transport channels through the DQD leading to strong side peaks in the thermoelectric and heat currents at $ E_{\rm L} \text{-} E_{\rm R} = \pm (U_{\rm intra} \text{-} U_{\rm inter})$ in addition to the main peak generated at $E_{\rm L} \text{=} E_{\rm R}$. The current side peaks are enhanced by increased strength of the Coulomb interactions. Interestingly, the current side peaks are enhanced when cotunneling terms are considered in which the resonances of the 2ESs assist the electron cotunneling process through the system. Furthermore, the issue of coherences is carefully checked in the DQD-leads system via different approaches to the master equation, which are the Pauli, the Redfield, a first order Lindblad, and the first- and second order von-Neumann methods. We realize that the Pauli method gives a wrong results for the thermoelectric transport when the role of the coherences is relevant.
description: RevTeX - pdfLaTeX, 9 pages with 9 pdf-figures included
Additional file 1 of SARSCoV-2 antibody prevalence and titers in persons living with HIV cared for at a large tertiary reference center in Mexico City
Creators: name: Soto-Nava, Maribel
name: Dávila-Conn, Vanessa
name: Venancio-Rocha, Juan P.
name: García-Esparza, Pedro
name: Tapia-Trejo, Daniela
name: Hernández-Juan, Ramón
name: Zarza-Sánchez, Eduardo
name: Murakami-Ogasawara, Akio
name: Ávila-Ríos, Santiago
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Additional file 1: Clinical and behavioral characteristics of PLWHIV participating in the study.
Automatic coarse co-registration of point clouds from diverse scan geometries: a test of detectors and descriptors
Creators: name: Pirotti, Francesco
name: Guarnieri, Alberto
name: Chiodini, Sebastiano
name: Bettanini, Carlo
Publisher: name: arXiv
Year: 2023
Subjects: subject: Computer Vision and Pattern Recognition (cs.CV)
subject: FOS: Computer and information sciences

description: Point clouds are collected nowadays from a plethora of sensors, some having higher accuracies and higher costs, some having lower accuracies but also lower costs. Not only there is a large choice for different sensors, but also these can be transported by different platforms, which can provide different scan geometries. In this work we test the extraction of four different keypoint detectors and three feature descriptors. We benchmark performance in terms of calculation time and we assess their performance in terms of accuracy in their ability in coarse automatic co-registration of two clouds that are collected with different sensors, platforms and scan geometries. One, which we define as having the higher accuracy, and thus will be used as reference, was surveyed via a UAV flight with a Riegl MiniVUX-3, the other on a bicycle with a Livox Horizon over a walking path with un-even ground.The novelty in this work consists in comparing several strategies for fast alignment of point clouds from very different surveying geometries, as the drone has a bird's eye view and the bicycle a ground-based view. An added challenge is related to the lower cost of the bicycle sensor ensemble that, together with the rough terrain, reasonably results in lower accuracy of the survey. The main idea is to use range images to capture a simplified version of the geometry of the surveyed area and then find the best features to match keypoints. Results show that NARF features detected more keypoints and resulted in a faster co-registration procedure in this scenariowhereas the accuracy of the co-registration is similar to all the combinations of keypoint detectors and features.
Fundamental dynamics of popularity-similarity trajectories in real networks
Creators: name: Papaefthymiou, Evangelos S.
name: Iordanou, Costas
name: Papadopoulos, Fragkiskos
Publisher: name: arXiv
Year: 2023
Subjects: subject: Physics and Society (physics.soc-ph)
subject: Social and Information Networks (cs.SI)
subject: FOS: Physical sciences
subject: FOS: Computer and information sciences

description: Real networks are complex dynamical systems, evolving over time with the addition and deletion of nodes and links. Currently, there exists no principled mathematical theory for their dynamics -- a grand-challenge open problem. Here, we show that the popularity and similarity trajectories of nodes in hyperbolic embeddings of different real networks manifest universal self-similar properties with typical Hurst exponents $H \ll 0.5$. This means that the trajectories are predictable, displaying anti-persistent or 'mean-reverting' behavior, and they can be adequately captured by a fractional Brownian motion process. The observed behavior can be qualitatively reproduced in synthetic networks that possess a latent geometric space, but not in networks that lack such space, suggesting that the observed subdiffusive dynamics are inherently linked to the hidden geometry of real networks. These results set the foundations for rigorous mathematical machinery for describing and predicting real network dynamics.
Compatibility of all noisy qubit observables
Creators: name: Renner, Martin J.
Publisher: name: arXiv
Year: 2023
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: It is a crucial feature of quantum mechanics that not all measurements are compatible with each other. However, if measurements suffer from noise they may lose their incompatibility. Here we determine the critical visibility such that all qubit observables, i.e. all positive operator-valued measures (POVMs), become compatible. In addition, we apply our methods to quantum steering and Bell nonlocality. We obtain a tight local hidden state model for two-qubit Werner states of visibility 1/2. Interestingly, this proves that POVMs do not help to demonstrate quantum steering for this family of states. As an implication, this also provides a new bound on how much white noise the two-qubit singlet can tolerate before it does not violate any Bell inequality.
description: 5+8 pages, 6 figures
Additional file 2 of SARSCoV-2 antibody prevalence and titers in persons living with HIV cared for at a large tertiary reference center in Mexico City
Creators: name: Soto-Nava, Maribel
name: Dávila-Conn, Vanessa
name: Venancio-Rocha, Juan P.
name: García-Esparza, Pedro
name: Tapia-Trejo, Daniela
name: Hernández-Juan, Ramón
name: Zarza-Sánchez, Eduardo
name: Murakami-Ogasawara, Akio
name: Ávila-Ríos, Santiago
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Additional file 2: COVID-19 associated symptoms report in PLWHIV participating in the study.
Importance of the integrated use of bioacoustics and mist nets for bat surveys
Creators: name: de Sales, Jeanneson Silva
name: de Lima, Hannah Larissa Nunes
name: Rocha, Fabiana Lopes
name: Cordeiro-Estrela, Pedro
name: da Rocha, Patrício Adriano
Publisher: name: Taylor & Francis
Year: 2025
Subjects: subject: Environmental Sciences not elsewhere classified
subject: Ecology
subject: FOS: Biological sciences

description: In Brazil, bat diversity surveys are usually carried out using only mist nets, where studies applying acoustic monitoring are scarce. Our aim was to analyse the complementarity of two survey methods, mist nets (MN) and acoustic monitoring (AM), to assess the bat diversity in forest remnants in the metropolitan region of João Pessoa (MRJP) in the state of Paraíba. With a total sampling effort of 1,443 minutes of recordings and 55,580 h.m2 of nets, we recorded 28 species from five families. Four species were recorded exclusively by AM, 14 only by MN and ten using both methods. The similarity analysis revealed that the composition of bat species differed between methods (ANOSIM: r2 = 0.9684; p < 0.01). The complementarity of the used methods indicates that AM added between 16% and 50% of new records to the total richness of each fragment. The percentage of occurrence suggests that common species in the recordings had not yet been documented or had a low number of records by MN. The integrated use of these two methods produced a more comprehensive picture of bat species richness in the study areas. These methods would not reveal the real diversity of bat species if applied singularly.
Intrinsic Superflat Bands in General Twisted Bilayer Systems
Creators: name: Wang, Hongfei
name: Ma, Shaojie
name: Zhang, Shuang
name: Lei, Dangyuan
Publisher: name: arXiv
Year: 2022
Subjects: subject: Optics (physics.optics)
subject: Mesoscale and Nanoscale Physics (cond-mat.mes-hall)
subject: Materials Science (cond-mat.mtrl-sci)
subject: FOS: Physical sciences

description: Twisted bilayer systems with discrete magic angles, such as twisted bilayer graphene featuring moiré superlattices, provide a versatile platform for exploring novel physical properties. Here, we discover a class of superflat bands in general twisted bilayer systems beyond the low-energy physics of magic-angle twisted counterparts. By considering continuous lattice dislocation, we obtain intrinsic localized states, which are spectrally isolated at lowest and highest energies and spatially centered around the AA stacked region, governed by the macroscopic effective energy potential well. Such localized states exhibit negligible inter-cell coupling and support the formation of superflat bands in a wide and continuous parameter space, which can be mimicked using a twisted bilayer nanophotonic system. Our finding suggests that general twisted bilayer systems can realize continuously tunable superflat bands and the corresponding localized states for various photonic, phononic and mechanical waves.
description: 7 pages, 6 figures
Additional file 3 of SARSCoV-2 antibody prevalence and titers in persons living with HIV cared for at a large tertiary reference center in Mexico City
Creators: name: Soto-Nava, Maribel
name: Dávila-Conn, Vanessa
name: Venancio-Rocha, Juan P.
name: García-Esparza, Pedro
name: Tapia-Trejo, Daniela
name: Hernández-Juan, Ramón
name: Zarza-Sánchez, Eduardo
name: Murakami-Ogasawara, Akio
name: Ávila-Ríos, Santiago
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Mental Health
subject: Infectious Diseases
subject: FOS: Health sciences
subject: Virology
subject: Computational Biology

description: Additional file 3: Correlation between total anti-N and neutralizing SARS-CoV-2 antibodies in PLWHIV on virologic suppression.