cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
A Tale of Two Type Ia Supernovae: The fast-declining siblings SNe 2015bo and 1997cn
Creators: name: Hoogendam, W. B.
name: Ashall, C.
name: Galbany, L.
name: Shappee, B. J.
name: Burns, C. R.
name: Lu, J.
name: Phillips, M. M.
name: Baron, E.
name: Holmbo, S.
name: Hsiao, E. Y.
name: Morrell, N.
name: Stritzinger, M. D.
name: Suntzeff, N. B.
name: Taddia, F.
name: Young, D. R.
name: Lyman, J. D.
name: Benetti, S.
name: Mazzali, P. A.
name: Mancheno, M. Delgado
name: Diaz, R. Gonzalez
name: Torres, S. Munoz
Publisher: name: arXiv
Year: 2021
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: We present optical and near-infrared photometric and spectroscopic observations of the fast-declining Type Ia Supernova (SN) 2015bo. SN 2015bo is under-luminous (M$_B$ = -17.67 $\pm$ 0.15 mag) and has a fast-evolving light curve ($Δ\mathrm{m}_{15}\mathrm{(B)}$ = 1.91 $\pm$ 0.01 mag and $s_{BV}$ = 0.48 $\pm$ 0.01). It has a unique morphology in the $V-r$ color curve, where it is bluer than all other SNe in the comparison sample. A $^{56}$Ni mass of 0.17 $\pm$ 0.03 $M_{\odot}$ was derived from the peak bolometric luminosity, which is consistent with its location on the luminosity-width relation. Spectroscopically, SN 2015bo is a Cool SN in the Branch classification scheme. The velocity evolution measured from spectral features is consistent with 1991bg-like SNe. SN 2015bo has a SN twin (similar spectra) and sibling (same host galaxy), SN 1997cn. Distance moduli of $μ$ = 34.33 $\pm$ 0.01 (stat) $\pm$0.11 (sys) mag and $μ$ = 34.34 $\pm$ 0.04 (stat) $\pm$ 0.12 (sys) mag were derived for SN 2015bo and SN 1997cn, respectively. These distances are consistent at the 0.06-$σ$ level with each other, and are also consistent with distances derived using surface-brightness fluctuations and redshift-corrected cosmology. This suggests that fast-declining SNe could be accurate distance indicators which should not be excluded from future cosmological analyses.
description: Accepted to ApJ. 29 pages, 22 figures
Additional file 6 of Mesenchymal stem cell-derived extracellular vesicles protect retina in a mouse model of retinitis pigmentosa by anti-inflammation through miR-146a-Nr4a3 axis
Creators: name: Zhang, Jia
name: Li, Pengdong
name: Zhao, Guifang
name: He, Siqi
name: Xu, Di
name: Jiang, Weijie
name: Peng, Qian
name: Li, Zhaohui
name: Xie, Zhongjian
name: Zhang, Han
name: Xu, Ying
name: Qi, Ling
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 6. Fig. S5. Functional miRNAs are detected in MSC-EVs. (A) MiRNA-seq results from the MSC-EVs we collected from human umbilical cord, with top ten highly expressed miRNAs listed. (B) KEGG analysis of major signal pathways involved in these top ten miRNAs.
Additional file 7 of Mesenchymal stem cell-derived extracellular vesicles protect retina in a mouse model of retinitis pigmentosa by anti-inflammation through miR-146a-Nr4a3 axis
Creators: name: Zhang, Jia
name: Li, Pengdong
name: Zhao, Guifang
name: He, Siqi
name: Xu, Di
name: Jiang, Weijie
name: Peng, Qian
name: Li, Zhaohui
name: Xie, Zhongjian
name: Zhang, Han
name: Xu, Ying
name: Qi, Ling
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 7. Fig. S6. Identification of BV2 cell line by Iba1 staining. (A, B) Images of BV2 cells stained with DAPI (blue) and Iba1(green, B), with no primary antibody as control (A).
Nonreciprocal Meissner response in parity-mixed superconductors
Creators: name: Watanabe, Hikaru
name: Daido, Akito
name: Yanase, Youichi
Publisher: name: arXiv
Year: 2021
Subjects: subject: Superconductivity (cond-mat.supr-con)
subject: FOS: Physical sciences

description: The parity breaking gives rise to rich superconducting properties through the admixture of even and odd-parity Cooper pairs. A new light has been shed on parity-breaking superconductors by recent observations of nonreciprocal responses such as the nonlinear optical responses and the superconducting diode effect. In this Letter, we demonstrate that the nonreciprocal responses are characterized by a unidirectional correction to the superfluid density, which we call nonreciprocal superfluid density. This correction leads to the nonreciprocal Meissner effect, namely, asymmetric screening of magnetic fields due to the nonreciprocal magnetic penetration depth. Performing a microscopic analysis of an exotic superconductor UTe$_2$ and examining the temperature dependence and renormalization effect, we show that the nonreciprocal Meissner effect is useful to probe parity-mixing properties and gap structures in superconductors.
description: 16 pages, 8 figures, 1 table
Additional file 8 of Mesenchymal stem cell-derived extracellular vesicles protect retina in a mouse model of retinitis pigmentosa by anti-inflammation through miR-146a-Nr4a3 axis
Creators: name: Zhang, Jia
name: Li, Pengdong
name: Zhao, Guifang
name: He, Siqi
name: Xu, Di
name: Jiang, Weijie
name: Peng, Qian
name: Li, Zhaohui
name: Xie, Zhongjian
name: Zhang, Han
name: Xu, Ying
name: Qi, Ling
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 8. Fig. S7. Identification of 661W cell line by recoverin and R&G opsin staining. (A, B) Images of 661W cells stained with DAPI (blue) and anti-recoverin (green, A), or opsin (red, C), with no primary antibody as a controls (B, D).
'Tell me what I need to know': Advocating for the necessity of uncertainty in Higher Education NTR.pdf
Creators: name: De Martin Silva, Luciana
Publisher: name: National Teaching Repository
Year: 2024
Subjects: classificationCode: 399999
subject: Other education not elsewhere classified

description: With the increasing pressure in Higher Education to produce results that reflect excellence in teaching, teaching staff are often grappling with issues regarding what students want, what they need and our professional and personal values. This blog shares a teaching episode and engages the audience in making sense of it in light of Perry's Scheme of Intellectual development as well as other research completed by the author. The audience is left with some key questions for reflection.
Additional file 9 of Mesenchymal stem cell-derived extracellular vesicles protect retina in a mouse model of retinitis pigmentosa by anti-inflammation through miR-146a-Nr4a3 axis
Creators: name: Zhang, Jia
name: Li, Pengdong
name: Zhao, Guifang
name: He, Siqi
name: Xu, Di
name: Jiang, Weijie
name: Peng, Qian
name: Li, Zhaohui
name: Xie, Zhongjian
name: Zhang, Han
name: Xu, Ying
name: Qi, Ling
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: Physiology
subject: Pharmacology
subject: Immunology
subject: FOS: Clinical medicine
subject: Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Cancer

description: Additional file 9. Fig. S8. Prediction of the relationship of miR-146a-5p and Nr4a3. (A) From the 10 thousand genes that may be modulated by the top 10 miRNA in MSC-EVs, 3 were found to be also differentially expressed between NS-treated and MSC-EVs treated rd10 retinas, which were predicted to be regulated by miRNA-21-5p, miRNA-146a-5p and miRNA-let7a-5p. (B) From the 40 differentially expressed genes following MSC-EVs treatment, 24 were also differentially expressed between WT and NS-treat rd10 group, among which 8 were downregulated and Nr4a3 was one of them. (C) The predicted binding sites of seed sequence of miR-146a-5p on 3’UTR of the sequence of Nr4a3.
Testing of planar hydrogenated amorphous silicon sensors with charge selective contacts for the construction of 3D- detectors
Creators: name: Menichelli, M.
name: Bizzarri, M.
name: Boscardin, M.
name: Caprai, M.
name: Caricato, A. P.
name: Cirrone, G. A. P.
name: Crivellari, M.
name: Cupparo, I.
name: Cuttone, G.
name: Dunand, S.
name: Fanò, L.
name: Hammad, O.
name: Ionica, M.
name: Kanxheri, K.
name: Large, M.
name: Maruccio, G.
name: Monteduro, A. G.
name: Morozzi, A.
name: Moscatelli, F.
name: Papi, A.
name: Passeri, D.
name: Petasecca, M.
name: Petringa, G.
name: Quarta, G.
name: Rizzato, S.
name: Rossi, A.
name: Rossi, G.
name: Scorzoni, A.
name: Servoli, L.
name: Talamonti, C.
name: Verzellesi, G.
name: Wyrsch, N.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: FOS: Physical sciences

description: Hydrogenated Amorphous Silicon (a-Si:H) is a material well known for its intrinsic radiation hardness and is primarily utilized in solar cells as well as for particle detection and dosimetry. Planar p-i-n diode detectors are fabricated entirely by means of intrinsic and doped PECVD of a mixture of Silane (SiH4) and molecular Hydrogen. In order to develop 3D detector geometries using a-Si:H, two options for the junction fabrication have been considered: ion implantation and charge selective contacts through atomic layer deposition. In order to test the functionality of the charge selective contact electrodes, planar detectors have been fabricated utilizing this technique. In this paper, we provide a general overview of the 3D fabrication project followed by the results of leakage current measurements and x-ray dosimetric tests performed on planar diodes containing charge selective contacts to investigate the feasibility of the charge selective contact methodology for integration with the proposed 3D detector architectures.
description: Submitted to JINST
The magnetic structure of the topological semimetal Co$_3$Sn$_2$S$_2$
Creators: name: Soh, Jian-Rui
name: Yi, ChangJiang
name: Zivkovic, Ivica
name: Qureshi, Navid
name: Stunault, Anne
name: Ouladdiaf, Bachir
name: Rodríguez-Velamazán, J. Alberto
name: Shi, YouGuo
name: Boothroyd, Andrew T.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Co$_3$Sn$_2$S$_2$ has recently been predicted to be a Weyl semimetal in which magnetic order is key to its behavior as a topological material. Here we report unpolarized neutron diffraction and spherical neutron polarimetry measurements, supported by magnetization and transport data, which probe the magnetic order in Co$_3$Sn$_2$S$_2$ below $T_\textrm{C} = 177$ K. The results are fully consistent with ferromagnetic order in which the spins on the Co atoms point along the crystal $c$ axis, although we cannot rule out some canting of the spins. We find no evidence for a type of long-ranged $(\textbf{k}=\textbf{0})$ in-plane 120$^\circ$ antiferromagnetic order which had previously been considered as a secondary phase present at temperatures between $\sim$90 K and $T_\textrm{C}$. A discontinuous change in bulk properties and neutron polarization observed at $T = 125$ K when samples are cooled in a field and measured on warming is found to be due to a sudden reduction in ferromagnetic domain size. Our results lend support to the theoretical predictions that Co$_3$Sn$_2$S$_2$ is a magnetic Weyl semimetal.
Additional file 1 of DCSE:Double-Channel-Siamese-Ensemble model for protein protein interaction prediction
Creators: name: Chen, Wenqi
name: Wang, Shuang
name: Song, Tao
name: Li, Xue
name: Han, Peifu
name: Gao, Changnan
Publisher: name: figshare
Year: 2022
Subjects: subject: Artificial Intelligence and Image Processing
subject: FOS: Computer and information sciences

description: Additional file 1.
Introducing the THESAN project: radiation-magnetohydrodynamic simulations of the epoch of reionization
Creators: name: Kannan, R.
name: Garaldi, E.
name: Smith, A.
name: Pakmor, R.
name: Springel, V.
name: Vogelsberger, M.
name: Hernquist, L.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We introduce the THESAN project, a suite of large volume (L = 95.5 cMpc) radiation-magnetohydrodynamic simulations that simultaneously model the large-scale statistical properties of the IGM during reionization and the resolved characteristics of the galaxies responsible for it. The flagship simulation has dark matter (DM) and baryonic mass resolutions of $3.1 \times 10^6$ $M_\odot$ and $5.8 \times 10^5 $ $M_\odot$, respectively. The gravitational forces are softened on scales of 2.2 ckpc with the smallest cell sizes reaching 10 pc at z=5.5, enabling predictions down to the atomic cooling limit. The simulations use an efficient radiation hydrodynamics solver (AREPO-RT) that precisely captures the interaction between ionizing photons and gas, coupled to well-tested galaxy formation (IllustrisTNG) and dust models to accurately predict the properties of galaxies. Through a complementary set of medium resolution simulations we investigate the changes to reionization introduced by different assumptions for ionizing escape fractions, varying DM models, and numerical convergence. The simulations produce realistic reionization histories that match the observed evolution of the global neutral hydrogen fraction and electron scattering optical depth to reionization. They also match a wealth of high-redshift observationally inferred data, including the stellar-to-halo-mass relation, stellar mass function, star formation rate density, and the mass-metallicity relation, despite the galaxy formation model being mainly calibrated at z=0. We demonstrate that different reionization models give rise to varied bubble size distributions that imprint unique signatures on the 21cm emission, especially on the slope of the power spectrum at large spatial scales, enabling current and upcoming 21cm experiments to accurately characterise the sources that dominate the ionizing photon budget. [abridged]
description: MNRAS, in press. Please visit www.thesan-project.com for more details
Additional file 1 of Safety and effectiveness of a novel dielectric mapping system: one-year, two chinese centers experiences
Creators: name: Ding, Lei
name: Huang, Xiao
name: Dai, Cong
name: Zhang, Hongda
name: Weng, Sixian
name: Yu, Fengyuan
name: Qi, Yingjie
name: Zhang, Shu
name: Shi, Ruizheng
name: Tang, Min
Publisher: name: figshare
Year: 2022
Subjects: subject: Space Science
subject: Medicine
subject: Cell Biology
subject: Biological Sciences not elsewhere classified
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. Supplementary Table 1. Medical therapy data in AF group. Supplementary Table 2. Cryoballoon ablation data.
The new era of the digital herbarium
Creators: name: Smedt, Sofie De
name: Bogaerts, Ann
name: Stoffelen, Piet
name: Engledow, Henry
name: Groom, Quentin
Publisher: name: figshare
Year: 2017
Subjects: Botany

description: A poster presented at the Status of the World Plants meeting at Kew, May 2017.
Additional file 1 of Irisin enhances chondrogenic differentiation of human mesenchymal stem cells via Rap1/PI3K/AKT axis
Creators: name: Chen, Taiqiu
name: Peng, Yan
name: Hu, Wenjun
name: Shi, Huihong
name: Li, Pengfei
name: Que, Yichen
name: Qiu, Jincheng
name: Qiu, Xianjian
name: Gao, Bo
name: Zhou, Hang
name: Chen, Yanbo
name: Zhu, Yuanxin
name: Li, Shaoguang
name: Liang, Anjing
name: Gao, Wenjie
name: Huang, Dongsheng
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Ecology
subject: Developmental Biology

description: Additional file 1. Supplementary tables in this study.
The paradigm of warm quintessential inflation and spontaneous baryogenesis
Creators: name: Basak, Soumen
name: Bhattacharya, Sukannya
name: Gangopadhyay, Mayukh R.
name: Jaman, Nur
name: Rangarajan, Raghavan
name: Sami, M.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: In this paper, we consider a scenario of spontaneous baryogenesis in a framework of warm quintessential inflation where the residual inflaton field, left out after warm inflation, plays the role of quintessence field at late times and is coupled to a non-conserved baryonic current. Assuming a four fermion $(B-L)$ violating effective interaction, we have demonstrated that the required baryon asymmetry can be produced successfully in this case. We show that the post-inflationary evolution, with the underlying scalar field potential, $V(ϕ)=V^4_0 \exp{(-αϕ^n/M_{\rm Pl}^4 ) }$, $n>1$ well suited to warm inflation, exhibits scaling behaviour soon after a brief kinetic regime. We show that the coupling of the scalar field to massive neutrino matter can give rise to exit from the scaling regime to cosmic acceleration at late times as massive neutrinos turn non-relativistic. The proposed model is shown to successfully describe the cosmic history from inflation to late-time acceleration, with the evolution independent of initial conditions, along with the generation of baryon asymmetry during the post-inflationary era. A brief analysis of relic gravity waves produced in the scenario is presented.
description: 19 pages, 10 figures; Accepted for publication in JCAP
Current_Protocols.pdf
Creators: name: Wilcox, Rand
Publisher: name: figshare
Year: 2017
Subjects: Uncategorized

description: This document provides a detailed description regarding how the analyses in Wilcox and Rousselet (2017) were performed. In particular, the R commands and resulting output are displayed. The general goal was to describe and illustrate some of the many improved methods for comparing groups and studying associations. General suggestions are made about which methods perform relatively well. Also attached are the data files used in the analyses. Installing the required R functions is described in our paper.

Wilcox, R. R. & Rousselet, G. A. (2017). A guide to robust statistical methods. In preparation
Piezo-deformable Mirrors for Active Mode Matching in Advanced LIGO
Creators: name: Srivastava, Varun
name: Mansell, Georgia
name: Makarem, Camille
name: Noh, Minkyun
name: Abbott, Richard
name: Ballmer, Stefan
name: Billingsley, GariLynn
name: Brooks, Aidan
name: Cao, Huy Tuong
name: Fritschel, Peter
name: Griffith, Don
name: Jia, Wenxuan
name: Kasprzack, Marie
name: MacInnis, Myron
name: Ng, Sebastian
name: Sanchez, Luis
name: Torrie, Calum
name: Veitch, Peter
name: Matichard, Fabrice
Publisher: name: arXiv
Year: 2021
Subjects: subject: Instrumentation and Methods for Astrophysics (astro-ph.IM)
subject: Applied Physics (physics.app-ph)
subject: Optics (physics.optics)
subject: FOS: Physical sciences

description: The detectors of the laser interferometer gravitational-wave observatory (LIGO) are broadly limited by the quantum noise and rely on the injection of squeezed states of light to achieve their full sensitivity. Squeezing improvement is limited by mode mismatch between the elements of the squeezer and the interferometer. In the current LIGO detectors, there is no way to actively mitigate this mode mismatch. This paper presents a new deformable mirror for wavefront control that meets the active mode matching requirements of advanced LIGO. The active element is a piezo-electric transducer, which actuates on the radius of curvature of a 5 mm thick mirror via an axisymmetric flexure. The operating range of the deformable mirror is 120+-8 mD in vacuum, with an additional 200 mD adjustment range accessible out of vacuum. The scattering into higher-order modes is measured to be <0.2% over the nominal beam radius. These piezo-deformable mirrors meet the stringent noise and vacuum requirements of advanced LIGO and will be used for the next observing run (O4) to control the mode-matching between the squeezer and the interferometer.
Does deep learning model calibration improve performance in class-imbalanced medical image classification?
Creators: name: Rajaraman, Sivaramakrishnan
name: Ganesan, Prasanth
name: Antani, Sameer
Publisher: name: arXiv
Year: 2021
Subjects: subject: Machine Learning (cs.LG)
subject: Computer Vision and Pattern Recognition (cs.CV)
subject: Image and Video Processing (eess.IV)
subject: FOS: Computer and information sciences
subject: FOS: Electrical engineering, electronic engineering, information engineering
subject: I.2
subject: 68T07

description: In medical image classification tasks, it is common to find that the number of normal samples far exceeds the number of abnormal samples. In such class-imbalanced situations, reliable training of deep neural networks continues to be a major challenge. Under these circumstances, the predicted class probabilities may be biased toward the majority class. Calibration has been suggested to alleviate some of these effects. However, there is insufficient analysis explaining when and whether calibrating a model would be beneficial in improving performance. In this study, we perform a systematic analysis of the effect of model calibration on its performance on two medical image modalities, namely, chest X-rays and fundus images, using various deep learning classifier backbones. For this, we study the following variations: (i) the degree of imbalances in the dataset used for training; (ii) calibration methods; and (iii) two classification thresholds, namely, default decision threshold of 0.5, and optimal threshold from precision-recall curves. Our results indicate that at the default operating threshold of 0.5, the performance achieved through calibration is significantly superior (p < 0.05) to using uncalibrated probabilities. However, at the PR-guided threshold, these gains are not significantly different (p > 0.05). This finding holds for both image modalities and at varying degrees of imbalance.
description: 34 pages, 21 figures, and 10 tables
Density functionals with spin-density accuracy for open shells
Creators: name: Callow, Timothy
name: Pearce, Benjamin
name: Gidopoulos, Nikitas
Publisher: name: arXiv
Year: 2021
Subjects: subject: Chemical Physics (physics.chem-ph)
subject: Materials Science (cond-mat.mtrl-sci)
subject: Atomic and Molecular Clusters (physics.atm-clus)
subject: FOS: Physical sciences

description: Electrons in zero external magnetic field can be studied with density functional theory (DFT) or with spin-DFT (SDFT). The latter is normally used for open shell systems because its approximations appear to model better the exchange and correlation (xc) functional, but also because so far the application of DFT implied a closed-shell-like approximation. Correcting this error for open shells allows the approximate DFT xc functionals to become as accurate as those in SDFT. In the limit of zero magnetic field, the Kohn-Sham equations of SDFT emerge as the generalised KS equations of DFT.
Fast algorithm to identify cluster synchrony through fibration symmetries in large information-processing networks
Creators: name: Monteiro, Higor S.
name: Leifer, Ian
name: Reis, Saulo D. S.
name: Andrade,, José S.
name: Makse, Hernan A.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Molecular Networks (q-bio.MN)
subject: Computational Complexity (cs.CC)
subject: FOS: Biological sciences
subject: FOS: Computer and information sciences

description: Recent studies revealed an important interplay between the detailed structure of fibration symmetric circuits and the functionality of biological and non-biological networks within which they have be identified. The presence of these circuits in complex networks are directed related to the phenomenon of cluster synchronization, which produces patterns of synchronized group of nodes. Here we present a fast, and memory efficient, algorithm to identify fibration symmetries over information-processing networks. This algorithm is specially suitable for large and sparse networks since it has runtime of complexity $O(M\log N)$ and requires $O(M+N)$ of memory resources, where $N$ and $M$ are the number of nodes and edges in the network, respectively. We propose a modification on the so-called refinement paradigm to identify circuits symmetrical to information flow (i.e., fibers) by finding the coarsest refinement partition over the network. Finally, we show that the presented algorithm provides an optimal procedure for identifying fibers, overcoming the current approaches used in the literature.
description: 13 pages, 7 figures
Additional file 2 of Irisin enhances chondrogenic differentiation of human mesenchymal stem cells via Rap1/PI3K/AKT axis
Creators: name: Chen, Taiqiu
name: Peng, Yan
name: Hu, Wenjun
name: Shi, Huihong
name: Li, Pengfei
name: Que, Yichen
name: Qiu, Jincheng
name: Qiu, Xianjian
name: Gao, Bo
name: Zhou, Hang
name: Chen, Yanbo
name: Zhu, Yuanxin
name: Li, Shaoguang
name: Liang, Anjing
name: Gao, Wenjie
name: Huang, Dongsheng
Publisher: name: figshare
Year: 2022
Subjects: subject: Biochemistry
subject: Cell Biology
subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: Ecology
subject: Developmental Biology

description: Additional file 2. Supplementary figures and figure legends in this study.
Photoemission characterization of N-polar III-Nitride photocathodes as bright electron beam source for accelerator applications
Creators: name: Cultrera, L.
name: Rocco, E.
name: Shahedipour-Sandvik, F.
name: Bell, L. D.
name: Bae, J. K.
name: Bazarov, I. V.
name: Saha, P.
name: Karkare, S.
name: Arjunan, A.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Accelerator Physics (physics.acc-ph)
subject: Applied Physics (physics.app-ph)
subject: FOS: Physical sciences

description: We report on the growth and characterization of a new class of photocathode structures for application as electron sources to produce high brightness electron beams for accelerator applications. The sources are realized using III-Nitride materials and are designed to leverage the strong polarization field characteristic of this class material while grown in their wurtzite crystal structure to produce a negative electron affinity condition without the use of Cs, possibly allowing these materials to be operated in RF gun. A Quantum Efficiency (QE) of about 1x10$^{-3}$ and a Mean Transverse Energy (MTE) of electron of about 100 meV are measured at the operating wavelength of 265 nm. In a vacuum level of 3x10$^{-10}$ Torr the QE does not decrease after more than 24 hours of continuous operation. The lowest MTE, about 50 meV, is measured at 300 nm where the measured QE is 1.5x10$^{-5}$. Surface characterizations reveal possible contribution to the MTE due to the surface morphology calling for more detailed studies.
description: will be submitted to Journal of Applied Physics
The Observation of High-Energy Neutrinos from the Cosmos: Lessons Learned for Multimessenger Astronomy
Creators: name: Halzen, Francis
Publisher: name: arXiv
Year: 2021
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: FOS: Physical sciences

description: The IceCube neutrino telescope discovered PeV-energy neutrinos originating beyond our Galaxy with an energy flux that is comparable to that of GeV-energy gamma rays and EeV-energy cosmic rays. These neutrinos provide the only unobstructed view of the cosmic accelerators that power the highest energy radiation reaching us from the universe. We will review the results from IceCube's first decade of operations, emphasizing the measurement of the diffuse multiflavored neutrino flux from the universe and the identification of the supermassive black hole TXS 0506+056 as a source of cosmic neutrinos and, therefore, cosmic rays. We will speculate on the lessons learned for multimessenger astronomy, among them that extragalactic neutrino sources may be a relatively small subset of the cosmic accelerators observed in high-energy gamma rays and that these may be gamma-ray-obscured at the times that they emit neutrinos.
description: Contribution to the Sixteenth Marcel Grossmann Meeting (MG16), July 5-10, 2021; An extended version of this talk can be found at https://onlinelibrary.wiley.com/doi/10.1002/andp.202100309
A guide to robust statistical methods: Illustrations using R
Creators: name: Wilcox, Rand
name: Rousselet, Guillaume
Publisher: name: figshare
Year: 2017
Subjects: Uncategorized

description: This document provides a detailed description regarding how the analyses in Wilcox and Rousselet (2017) were performed. In particular, the R commands and resulting output are displayed. The general goal was to describe and illustrate some of the many improved methods for comparing groups and studying associations. General suggestions are made about which methods perform relatively well. Also attached are the data files used in the analyses. Installing the required R functions is described in our paper.

Wilcox, R. R. & Rousselet, G. A. (2017). A guide to robust statistical methods. In preparation
title: "Jacques leibowitch-email du 20/09/2017" à un correspondant non mentionné
Creators: name: Leibowitch, Jacques
Publisher: name: NAKALA - https://nakala.fr (Huma-Num - CNRS)
publisherIdentifier: https://ror.org/04ces3204
publisherIdentifierScheme: ROR
Year: 2020

description: Texte sur le traitement.
description: Source: http://www.calames.abes.fr/pub/ms/Calames-2019311113242126
description: created: start=1975;end=2018
Design and Experimental Application of a Radon Diffusion Chamber for Determining Diffusion Coefficients in Membrane Materials
Creators: name: Wu, Liang-Yu
name: Si, Lin
name: Wu, Yuan
name: Gao, Zhi-Xing
name: Heng, Yue-Kun
name: Li, Yuan
name: Liu, Jiang-Lai
name: Luo, Xiao-Lan
name: Ma, Fei
name: Meng, Yue
name: Qian, Xiao-Hui
name: Qian, Zhi-Cheng
name: Wang, Hao
name: Yun, You-Hui
name: Zhang, Gao-Feng
name: Zhao, Jie
Publisher: name: arXiv
Year: 2024
Subjects: subject: Instrumentation and Detectors (physics.ins-det)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: In recent years, the issue of radon emanation and diffusion has become a critical concern for rare decay experiments, such as JUNO and PandaX-4T. This paper introduces a detector design featuring a symmetric radon detector cavity for the quantitative assessment of membrane materials' radon blocking capabilities. The performance of this design is evaluated through the application of Fick's Law and the diffusion equation considering material solubility. Our detector has completed measurements of radon diffusion coefficients for four types of membrane materials currently used in experiments, which also confirms the rationality of this detector design. The findings are instrumental in guiding the selection and evaluation of optimal materials for radon shielding to reduce radon background, contributing to boost sensitivities of rare event research.
description: 7 pages, 10 figures and 2 tables
The role of attraction in the phase diagrams and melting scenarios of generalized 2D Lennard-Jones systems
Creators: name: Tsiok, Elena N.
name: Fomin, Yuri D.
name: Gaiduk, Evgenii A.
name: Tareyeva, Elena E.
name: Ryzhov, Valentin N.
name: Libet, Pavel A.
name: Dmitryuk, Nikita A.
name: Kryuchkov, Nikita P.
name: Yurchenko, Stanislav O.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Soft Condensed Matter (cond-mat.soft)
subject: FOS: Physical sciences

description: Monolayer and two-dimensional (2D) systems exhibit rich phase behavior, compared with 3D systems, in particular, due to the hexatic phase playing a central role in melting scenarios. The attraction range is known to affect critical gas-liquid behavior (liquid-liquid in protein and colloidal systems), but the effect of attraction on melting in 2D systems remains unstudied systematically. Here, we reveal how the attraction range affects the phase diagrams and melting scenarios in a 2D system. Using molecular dynamics simulations we considered the generalized Lennard-Jones system with a fixed repulsion branch and different power indices of attraction, from long-range dipolar to short-range sticky-spheres-like. A drop in the attraction range has been found to reduce the temperature of the gas-liquid critical point, bringing it closer to the gas-liquid-solid triple point. At high-temperatures, attraction does not affect the melting scenario that proceeds through the cascade of solid-hexatic (Berezinski-Kosterlitz-Thouless) and hexatic-liquid (first-order) phase transitions. In the case of dipolar attraction, we observed \emph{two triple points}, inherent in a 2D system: hexatic-liquid-gas and crystal-hexatic-gas, the temperature of the crystal-hexatic-gas triple point is \emph{below} the hexatic-liquid-gas triple point. This observation may have far-reaching consequences for future studies, since phase diagrams determine possible routes of self-assembly in molecular, protein, and colloidal systems, whereas the attraction range can be adjusted with complex solvents and external electric or magnetic fields. The results obtained may be widely used in condensed matter, chemical physics, materials science, and soft matter.
description: 11 pages, 11 figures
Geometrothermodynamics of van der Waals systems
Creators: name: Quevedo, Hernando
name: Quevedo, Maria N.
name: Sanchez, Alberto
Publisher: name: arXiv
Year: 2021
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Mathematical Physics (math-ph)
subject: FOS: Physical sciences

description: We explore the properties of the equilibrium space of van der Waals thermodynamic systems. We use an invariant representation of the fundamental equation by using the law of corresponding states, which allows us to perform a general analysis for all possible van der Waals systems. The investigation of the equilibrium space is performed by using the Legendre invariant formalism of geometrothermodynamics, which guarantees the independence of the results from the choice of thermodynamic potential. We find all the curvature singularities of the equilibrium space that correspond to first and second order phase transitions. We compare our results with those obtained by using Hessian metrics for the equilibrium space. We conclude that the formalism of geometrothermodynamics allows us to determine the complete phase transition structure of systems with two thermodynamic degrees of freedom.
Additional file 8 of Circular RNA expression profiles and CircSnd1-miR-135b/c-foxl2 axis analysis in gonadal differentiation of protogynous hermaphroditic ricefield eel Monopterus albus
Creators: name: He, Zhi
name: Ma, Zhijun
name: Yang, Deying
name: Chen, Qiqi
name: He, Zhide
name: Hu, Jiaxiang
name: Deng, Faqiang
name: Zhang, Qian
name: He, Jiayang
name: Ye, Lijuan
name: Chen, Hongjun
name: He, Liang
name: Huang, Xiaoli
name: Luo, Wei
name: Yang, Shiyong
name: Gu, Xiaobin
name: Zhang, Mingwang
name: Yan, Taiming
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 8.
On elliptic solutions of the associative Yang-Baxter equation
Creators: name: Burban, Igor
name: Peruzzi, Andrea
Publisher: name: arXiv
Year: 2021
Subjects: subject: Algebraic Geometry (math.AG)
subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: FOS: Mathematics
subject: FOS: Physical sciences

description: We give a direct proof of the fact that elliptic solutions of the associative Yang-Baxter equation arise from appropriate spherical orders on an elliptic curve.
Amplifying cancer immunity: AMPK activators and γδ T cells unveiled
Creators: name: Anwar, Firoz
name: Al-Abbasi, Fahad A.
name: Almalki, Naif Abdullaha R.
name: Alhayyani, Sultan
name: Verma, Amita
name: Kumar, Vikas
Publisher: name: IfADo - Leibniz Research Centre for Working Environment and Human Factors, Dortmund
Year: 2024
Subjects: CD9
prognosis
overall survival
malignant neoplasm
meta-analysis

description: EXCLI Journal; 23:Doc1327; ISSN 1611-2156
Detecting heat leaks with trapped ion qubits
Creators: name: Pijn, Daniel
name: Onishchenko, Oleksiy
name: Hilder, Janine
name: Poschinger, Ulrich G.
name: Schmidt-Kaler, Ferdinand
name: Uzdin, Raam
Publisher: name: arXiv
Year: 2021
Subjects: subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: Recently, the principle of \textit{passivity} has been used to set bounds on the evolution of a microscopic quantum system with a thermal initial state. In this work, we experimentally demonstrate the utility of two passivity based frameworks: global passivity and passivity deformation, for the detection of a "hidden" or unaccounted environment. We employ two trapped-ion qubits undergoing unitary evolution, which may optionally be coupled to an unobserved environment qubit. Evaluating the measurement data from the system qubits, we show that global passivity can verify the presence of a coupling to an unobserved environment - a heat leak - in a case where the second law of thermodynamics fails. We also show that passivity deformation is even more sensitive, detecting a heat leak where global passivity fails.
M(BO)$_{k+1}^-$ Anions: Novel Superhalogens Based on Boronyl Ligands
Creators: name: Srivastava, Ambrish Kumar
Publisher: name: arXiv
Year: 2021
Subjects: subject: Atomic and Molecular Clusters (physics.atm-clus)
subject: Chemical Physics (physics.chem-ph)
subject: FOS: Physical sciences

description: Superhalogens have been a subject of continuous attraction for the last four decades due to their unusual structures and interesting applications. In the quest for new superhalogens based on boronyl (BO) ligands, we investigate M(BO)$_{k+1}^-$ anions using high-level ab initio CCSD(T) and B3LYP density functional method for M = Li, Na, K, Be, Mg, Ca, B, and Al. Their structures are linear for M = Li, Na, K, trigonal planar M = Be, Mg, Ca, and tetrahedral for M = B, Al. These anions are energetically and thermodynamically stable against various fragmentations. Their superhalogen property has been established due to their higher vertical detachment energy (VDE) than halogen, being in the range 4.44-7.81 eV. For a given k, the stability and VDE of M(BO)$_{k+1}^-$ anions decrease with the increase in the size of M, which is due to a decrease in the charge delocalization on BO moieties. There exists a linear correlation between frontier orbitals energy gap and VDE with the coefficient, R$^2$ = 0.93888. It was also noticed that BO ligand, due to lower dimerization energy, can be preferably used as an inorganic analog of CN. We believe that these findings should be interesting for researchers working in superatomic chemistry as well as in boron chemistry. Keywords:
description: 18 pages
Dynamical Friction From Ultralight Dark Matter
Creators: name: Wang, Yourong
name: Easther, Richard
Publisher: name: arXiv
Year: 2021
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: Cosmology and Nongalactic Astrophysics (astro-ph.CO)
subject: FOS: Physical sciences

description: We simulate the gravitational dynamics of a massive object interacting with Ultralight / Fuzzy Dark Matter (ULDM/FDM), non-relativistic quantum matter described by the Schrodinger-Poisson equation. We first consider a point mass moving in a uniform background, and then a supermassive black hole (SMBH) moving within a ULDM soliton. After replicating simple dynamical friction scenarios to verify our numerical strategies, we demonstrate that the wake induced by a moving mass in a uniform medium may undergo gravitational collapse that dramatically increases the drag force, albeit in a scenario unlikely to be encountered astrophysically. We broadly confirm simple estimates of dynamical friction timescales for a black hole at the center of a halo but see that a large moving point mass excites coherent "breathing modes" in a ULDM soliton. These can lead to "stone skipping" trajectories for point masses which do not sink uniformly toward the center of the soliton, as well as stochastic motion near the center itself. These effects will add complexity to SMBH-ULDM interactions and to SMBH mergers in a ULDM universe.
description: 14 pages, 19 figures
International infectious diseases teaching to undergraduate medical students: A successful European collaborative experience*
Creators: name: Charlier, Caroline
name: Johannessen, Ingólfur
name: Mackintosh, Claire L.
name: Wilks, David
name: Cauda, Roberto
name: Wolf, Federica I.
name: Jeunne, Claire Le
Publisher: name: Taylor & Francis
Year: 2017
Subjects: subject: Medicine
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: Science Policy

description: Context: The emerging global-health paradigm requires medical teaching to be continuously redefined and updated; to this end, transnational approaches should be encouraged and medical training harmonized. Infectious diseases (ID) teaching in the current context of emerging infections, fast-increasing bacterial resistance and large-scale human migration, was chosen to develop a common international course. Objective: We report the successful implementation of a joint European undergraduate course aiming to (i) develop a common ID core curriculum among European medical schools; (ii) promote mobility among teachers and students (iii) promote international cooperation among European teachers. Methods: The course was built around teachers’ mobility. It was delivered in English by a team of European medical educators from Paris Descartes University, Università Cattolica del Sacro Cuore in Rome and the University of Edinburgh to groups of 25–30 undergraduate medical students at each university. Partner Institutions officially recognized the course as substitutive of or additive to the regular curriculum. Results: The course has been running for 3 years and received excellent satisfaction scores by students and staff as regards to scientific content, pedagogy and international exchanges. Conclusion: This cooperative approach demonstrates the feasibility of a harmonized European undergraduate medical education, having ID as a test experiment for future developments.
Jet Drift and Collective Flow in Heavy-Ion Collisions
Creators: name: Antiporda, Logan
name: Bahder, Joseph
name: Rahman, Hasan
name: Sievert, Matthew D.
Publisher: name: arXiv
Year: 2021
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: Nuclear Theory (nucl-th)
subject: FOS: Physical sciences

description: We study the tomographic applications of a new phenomenon we dub "jet drift" -- the deflection of high-energy particles and jets toward the direction of a flowing medium -- to the quark-gluon plasma produced in heavy-ion collisions. While the physics of jet drift is quite general, for specificity we consider the case of photon-jet production at mid-rapidity. Beginning with the simplest possible model, a large slab of uniformly flowing plasma, we systematically introduce the geometrical elements of a heavy-ion collision in a simple optical Glauber model. We find that the moving medium causes the jet to drift in the direction of the flow, bending its trajectory and leaving detailed signatures of the flow pattern in the distribution of $γ+ \: \mathrm{jet}$ acoplanarities. In the elliptical geometries produced in non-central collisions, this drift effect leads to a strong geometry coupling which persists despite the addition of event-by-event fluctuations in the jet production point, impact parameter, and acoplanarity. We propose a new observable to measure the jet drift effect through the correlation of $γ+ \: \mathrm{jet}$ acoplanarities with the elliptic flow of soft particles. Preliminary estimates suggest this correlation may be studied at sPHENIX and the LHC.
description: 52 pages, 18 figures
Pruning a restricted Boltzmann machine for quantum state reconstruction
Creators: name: Golubeva, Anna
name: Melko, Roger G.
Publisher: name: arXiv
Year: 2021
Subjects: subject: Quantum Physics (quant-ph)
subject: Other Condensed Matter (cond-mat.other)
subject: FOS: Physical sciences

description: Restricted Boltzmann machines (RBMs) have proven to be a powerful tool for learning quantum wavefunction representations from qubit projective measurement data. Since the number of classical parameters needed to encode a quantum wavefunction scales rapidly with the number of qubits, the ability to learn efficient representations is of critical importance. In this paper we study magnitude-based pruning as a way to compress the wavefunction representation in an RBM, focusing on RBMs trained on data from the transverse-field Ising model in one dimension. We find that pruning can reduce the total number of RBM weights, but the threshold at which the reconstruction accuracy starts to degrade varies significantly depending on the phase of the model. In a gapped region of the phase diagram, the RBM admits pruning over half of the weights while still accurately reproducing relevant physical observables. At the quantum critical point however, even a small amount of pruning can lead to significant loss of accuracy in the physical properties of the reconstructed quantum state. Our results highlight the importance of tracking all relevant observables as their sensitivity varies strongly with pruning. Finally, we find that sparse RBMs are trainable and discuss how a successful sparsity pattern can be created without pruning.
Why IVC Filters Are Necessary to Prevent Blood Clots
Creators: name: Drug Watcher
Publisher: name: figshare
Year: 2017
Subjects: subject: 110299 Cardiorespiratory Medicine and Haematology not elsewhere classified
subject: FOS: Clinical medicine

description: Inferior Vena Cava (IVC) filters are placed in a large vein located in the abdomen. This large vein is responsible for making sure that blood returns from the lower part of the body back to the heart. This is a common procedure for anyone suffering from blood clots, for one reason or another, and who cannot receive (or does not respond) to conventional medicine as part of their treatment plan. However, there are some additional points to understand about IVC filters.
References III
Creators: name: Veling, Harm
name: Holland, Rob
name: Tjepkema, Wim
Publisher: name: OSF Registries
Year: 2016

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