cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
The magnetic structures of the anisotropic inter-metallic compounds Er$_2$CoGa$_8$ and Tm$_2$CoGa$_8$
Creators: name: Johnson, R. D.
name: Frawley, T.
name: Manuel, P.
name: Khalyavin, D. D.
name: Adriano, C.
name: Giles, C.
name: Pagliuso, P. G.
name: Hatton, P. D.
Publisher: name: arXiv
Year: 2011
Subjects: subject: Strongly Correlated Electrons (cond-mat.str-el)
subject: FOS: Physical sciences

description: Two members of the iso-structural R$_2$CoGa$_8$ inter-metallic series, Er$_2$CoGa$_8$ and Tm$_2$CoGa$_8$, have been studied by powder neutron diffraction. Antiferromagnetic ordering of the rare-earth sublattices was confirmed to occur at 3.0 K and 2.0 K, respectively. Furthermore, determination of the critical exponent showed Er$_2$CoGa$_8$ to adopt a 3D universality class. In spite of a common magnetic easy axis and similar structural characteristics, the antiferromagnetic structures were found to be different for the erbium and thulium based compounds. The corresponding magnetic space groups were determined to be $P_{2a}mmm'$ and $P_Cmmm$. The difference in magnetic structures is discussed based on crystal electric field effects that are known to be prevalent in such materials.
description: 6 pages, 4 figures, 3 tables
ลักษณะทางระบาดวิทยา อาการทางคลินิกและผลตรวจทางห้องปฏิบัติการของหญิงตั้งครรภ์ที่ป่วยด้วยโรคชิคุนกุนยา โรงพยาบาลศูนย์ตรัง
Creators: name: สุธารัตน์ ชูคง
Publisher: name: กองนวัตกรรมและวิจัย กรมควบคุมโรค
Year: 2554
Subjects: หญิงตั้งครรภ์
โรคชิคุนกุนยา

description: วารสารควบคุมโรค, 37, 1, 47-53
Critical Overview of Loops and Foams
Creators: name: Alexandrov, Sergei
name: Roche, Philippe
Publisher: name: arXiv
Year: 2010
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: This is a review of the present status of loop and spin foam approaches to quantization of four-dimensional general relativity. It aims at raising various issues which seem to challenge some of the methods and the results often taken as granted in these domains. A particular emphasis is given to the issue of diffeomorphism and local Lorentz symmetries at the quantum level and to the discussion of new spin foam models. We also describe modifications of these two approaches which may overcome their problems and speculate on other promising research directions.
description: 75 pages
Snow metamorphism: a fractal approach
Creators: name: Carbone, Anna
name: Chiaia, Bernardino M.
name: Frigo, Barbara
name: Turk, Christian
Publisher: name: arXiv
Year: 2010
Subjects: subject: Statistical Mechanics (cond-mat.stat-mech)
subject: Computational Physics (physics.comp-ph)
subject: FOS: Physical sciences

description: Snow is a porous disordered medium consisting of air and three water phases: ice, vapour and liquid. The ice phase consists of an assemblage of grains, ice matrix, initially arranged over a random load bearing skeleton. The quantitative relationship between density and morphological characteristics of different snow microstructures is still an open issue. In this work, a three-dimensional fractal description of density corresponding to different snow microstructure is put forward. First, snow density is simulated in terms of a generalized Menger sponge model. Then, a fully three-dimensional compact stochastic fractal model is adopted. The latter approach yields a quantitative map of the randomness of the snow texture, which is described as a three-dimensional fractional Brownian field with the Hurst exponent H varying as continuous parameter. The Hurst exponent is found to be strongly dependent on snow morphology and density. The approach might be applied to all those cases where the morphological evolution of snow cover or ice sheets should be conveniently described at a quantitative level.
Generalized Mannheim Curves in Minkowski space-time $E_1^4$
Creators: name: Ersoy, Soley
name: Tosun, Murat
name: Matsuda, Hiroo
Publisher: name: arXiv
Year: 2010
Subjects: subject: Differential Geometry (math.DG)
subject: FOS: Mathematics
subject: 53B30, 53A35

description: In this paper, the definition of generalized spacelike Mannheim curve in Minkowski space-time $E_1^4$ is given. The necessary and sufficient conditions for the generalized spacelike Mannheim curve are obtained. Also, some characterizations of Mannheim curve are given.
Millisecond solar radio bursts in the metric wavelength range
Creators: name: Magdalenić, J.
name: Hillaris, A.
name: Zlobec, P.
name: Vršnak, B.
Publisher: name: arXiv
Year: 2010
Subjects: subject: Solar and Stellar Astrophysics (astro-ph.SR)
subject: FOS: Physical sciences

description: A study and classification of super-short structures (SSSs) recorded during metric type IV bursts is presented. The most important property of SSSs is their duration, at half power ranging from 4-50 ms, what is up to 10 times shorter than spikes at corresponding frequencies. The solar origin of the SSSs is confirmed by one-to-one correspondence between spectral recordings of Artemis-IV1 and high time resolution single frequency measurements of the TSRS2. We have divided the SSSs in the following categories: 1. Broad-Band SSSs: They were partitioned in two subcategories, the SSS-Pulses and Drifting SSSs; 2. Narrow-band: They appear either as Spike-Like SSSs or as Patch-Like SSSs; 3. Complex SSS: They consist of the absorption-emission segments and were morphologically subdivided into Rain-drop Bursts (narrow-band emission head and a broad-band absorption tail) and Blinkers.
description: Recent Advances in Astronomy and Astrophysics: 7th International Conference of the Hellenic Astronomical Society. AIP Conference Proceedings, Volume 848, pp. 224-228 (2006)
Additional file 3 of Evaluation of the association between maternal folic acid supplementation and the risk of congenital heart disease: a systematic review and meta-analysis
Creators: name: Cheng, Zhengpei
name: Gu, Rui
name: Lian, Zenglin
name: Gu, Harvest F.
Publisher: name: figshare
Year: 2022
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: Chemical Sciences not elsewhere classified
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Mathematical Sciences not elsewhere classified
subject: Cancer
subject: Science Policy
subject: Infectious Diseases
subject: FOS: Health sciences

description: Additional file 3.
รายงานผู้ป่วย 1 ราย: Mucous Membrane Pemphigoid
Creators: name: สุกัญญา เพ็ชรสันทัด
Publisher: name: กองนวัตกรรมและวิจัย กรมควบคุมโรค
Year: 2554
Subjects: มิวคัสเมมเบรน เพมฟิกอยด์
โรคความผิดปกติของการตอบสนองของระบบภูมิคุ้มกันของร่างกาย
รอยโรคตุ่มน้ำใส

description: วารสารควบคุมโรค, 37, 1, 54-59
การรักษาและการจัดการผู้ป่วยโรคเรื้อนที่มีภาวะเห่อชนิดที่ 1
Creators: name: วังสันต์ อรรถเศรษฐ
Publisher: name: กองนวัตกรรมและวิจัย กรมควบคุมโรค
Year: 2554
Subjects: โรคเรื้อน
โรคเห่อชนิดที่ 1
การรักษา

description: วารสารควบคุมโรค, 37, 1, 60-74
Cognitive fusion and personality traits in the context of mindfulness: A cross-sectional study
Creators: name: Pux, Sarah
name: Hahn, Eric
name: Bergmann, Niklas
name: Hahne, Inge
name: Pauly, Luca
name: Ta, Thi Minh Tam
name: Pijenborg, Gerdina H. M.
name: Böge, Kerem
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2022
Subjects: subject: meditation
subject: mindfulness
subject: eastern traditions
subject: western psychology
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Objectives: Meditation and mindfulness, though rooted in eastern traditions, have been increasingly embraced in western psychology. However, questions remain regarding the mechanisms through which the beneficial effects of mindfulness occur. The present study aimed to address cognitive fusion as a potential mediator between mindfulness and negative affect and whether the mindfulness-cognitive fusion link is moderated by personality factors in an international sample of frequent meditators. Methods: An international sample of 739 frequent meditators completed measures of mindfulness (Southampton Mindfulness Questionnaire), cognitive fusion (Cognitive Fusion Questionnaire), negative affect (Brief Symptom Checklist), and personality (Big Five Inventory) in an online survey. Using SPSS Process Macro, cognitive fusion was examined as a mediator between mindfulness and negative affect. Furthermore, Extraversion, Conscientiousness, and Neuroticism were investigated as moderators in the mediation model. Results: Cognitive fusion was found to be a partial mediator between mindfulness and negative affect (b = -0.249; 95% CI, [-0.289, -0.203]), whereas the examined personality factors were not found to moderate the present model (E: t(734) = 0.951, p = .342); C: t(734) = -0.042, p = .967; N: t(734) = -2.271, p = .023). Conclusions: This study suggests that cognitive fusion plays a significant role in the association between mindfulness and negative affect. These findings indicate the importance of how individuals internally respond and relate to experiences and the instrumental value of mindfulness effects beyond and outside of mindfulness-based interventions.
HERAPDF fits including $F_2$(charm) data
Creators: name: Cooper-Sarkar, A M
Publisher: name: arXiv
Year: 2010
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: High Energy Physics - Experiment (hep-ex)
subject: FOS: Physical sciences

description: PDF fits in the HERAPDF1.0 formalism have been made to the combined HERA-I inclusive data and the newly combined $F_2$(charm) data from the H1 and ZEUS experiments. The charm data are found to be sensitive to the value of the charm mass and the choice of the heavy quark scheme. This has consequences for the predictions of $W$ and $Z$ cross sections at the LHC.
description: Talk on behalf of the H1 and ZEUS collaborations; 5 pages, 7 figures; submitted to the proceedings of the XVIII International Workshop on Deep-Inelastic Scattering and Related Subjects, DIS 2010, April 19-23, 2010, Firenze, Italy
New multimodal intervention to reduce irritable bowel syndrome (IBS) severity symptoms—Pilot study with a 12 month follow-up
Creators: name: Hinse, Maximilian
name: Thronicke, Anja
name: Berghöfer, Anne
name: Matthes, Harald
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2022
Subjects: subject: irritable bowel syndrome (IBS)
subject: suffering
subject: anxiety
subject: depression
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Introduction Irritable bowel syndrome (IBS) is characterized by patients' high level of suffering. Up to 60% of patients with IBS have symptoms of anxiety or depression and only little attention has been paid to their specific requirements. Anthroposophical multimodal therapy (AMT) has been shown to significantly improve health-related quality of life of patients with high symptomatic burden. Objective The aim of this pilot study was to find out whether AMT meets the needs of IBS patients and the interactions of AMT with IBS, depression and anxiety Methods Patients with diagnosed IBS were included in a feasibility study and received 12 sessions of AMT over 8 weeks (drks.de, DRKS00016890). The primary endpoint was the change of the IBS severity score (IBS-SSS) and changes were calculated by linear mixed effects analyses. The secondary endpoints were changes of self-reported PHQ-9 and GAD-7 for mental comorbidity as well as self-valued effectiveness and satisfaction of AMT. Results Thirty-six patients, 89% female, were included in the study. AMT was successfully applied to IBS patients (-45 points in the IBS-SSS, p < .05). AMT had a large positive effect (-84 points in IBS-SSS, p < .003) on patients without anxiety or depression. Over time, patients with higher anxiety scores worsened with regard to their IBS compared to patients with depression and without mental comorbidity. The AMT effect was maintained at a 12 month follow up and both mentally affected and unaffected patients, had even lower IBS severity than shortly after AMT. AMT modules were rated by IBS patients as very effective. Conclusion Our findings suggest that an 8-week program of AMT improves the severity of IBS with an ongoing effect at a 12 month follow-up. Especially for patients without psychological comorbidities, AMT is very successful. Future IBS therapies should incorporate a modified multimodal concept with stronger psychological therapy modules in parallel for patients with depression and anxiety.
FABIAN-variant: predicting the effects of DNA variants on transcription factor binding
Creators: name: Steinhaus, Robin
name: Robinson, Peter N
name: Seelow, Dominik
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2022
Subjects: subject: DNA variants
subject: transcription factor binding
subject: coding variants
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: While great advances in predicting the effects of coding variants have been made, the assessment of non-coding variants remains challenging. This is especially problematic for variants within promoter regions which can lead to over-expression of a gene or reduce or even abolish its expression. The binding of transcription factors to the DNA can be predicted using position weight matrices (PWMs). More recently, transcription factor flexible models (TFFMs) have been introduced and shown to be more accurate than PWMs. TFFMs are based on hidden Markov models and can account for complex positional dependencies. Our new web-based application FABIAN-variant uses 1224 TFFMs and 3790 PWMs to predict whether and to which degree DNA variants affect the binding of 1387 different human transcription factors. For each variant and transcription factor, the software combines the results of different models for a final prediction of the resulting binding-affinity change. The software is written in C++ for speed but variants can be entered through a web interface. Alternatively, a VCF file can be uploaded to assess variants identified by high-throughput sequencing. The search can be restricted to variants in the vicinity of candidate genes. FABIAN-variant is available freely at https://www.genecascade.org/fabiard.
กระบวนการทางนโยบายของการกำหนดยุทธศาสตร์การป้องกันควบคุมโรคของกรมควบคุมโรค ปีงบประมาณ 2553
Creators: name: สมหมาย คงกระพันธ์
Publisher: name: กองนวัตกรรมและวิจัย กรมควบคุมโรค
Year: 2554
Subjects: ยุทธศาสตร์การป้องกันและควบคุมโรค
กรมควบคุมโรค

description: วารสารควบคุมโรค, 37, 2, 75-82
Eigenvalue Problem in Two Dimensions for an Irregular Boundary II: Neumann Condition
Creators: name: Panda, S.
name: Chakraborty, S.
name: Khastgir, S. P.
Publisher: name: arXiv
Year: 2011
Subjects: subject: Mathematical Physics (math-ph)
subject: High Energy Physics - Theory (hep-th)
subject: Quantum Physics (quant-ph)
subject: FOS: Physical sciences

description: We formulate a systematic elegant perturbative scheme for determining the eigenvalues of the Helmholtz equation (\bigtriangledown^{2} + k^{2})ψ = 0 in two dimensions when the normal derivative of ψ vanishes on an irregular closed curve. Unique feature of this method, unlike other perturbation schemes, is that it does not require a separate formalism to treat degeneracies. Degenerate states are handled equally elegantly as the non-degenerate ones. A real parameter, extracted from the parameters defining the irregular boundary, serves as a perturbation parameter in this scheme as opposed to earlier schemes where the perturbation parameter is an artificial one. The efficacy of the proposed scheme is gauged by calculating the eigenvalues for elliptical and supercircular boundaries and comparing with the results obtained numerically. We also present a simple and interesting semi-empirical formula, determining the eigenspectrum of the 2D Helmholtz equation with the Dirichlet or the Neumann condition for a supercircular boundary. A comparison of the eigenspectrum for several low-lying modes obtained by employing the formula with the corresponding numerical estimates shows good agreement for a wide range of the supercircular exponent.
description: 26 pages, 12 figures
Additional file 3 of Noninvasive model for predicting future ischemic strokes in patients with silent lacunar infarction using radiomics
Creators: name: Su, Jie-hua
name: Meng, Ling-wei
name: Dong, Di
name: Zhuo, Wen-yan
name: Wang, Jian-ming
name: Liu, Li-bin
name: Qin, Yi
name: Tian, Ye
name: Tian, Jie
name: Li, Zhao-hui
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Mathematical Sciences not elsewhere classified

description: Additional file 3. Flowchart for the follow-ups process. CT: Computed tomography; MRI: Magnetic Resonance Imaging
Seismic assessment of basement walls in British Columbia
Creators: name: Amirzehni, Elnaz
Publisher: name: University of British Columbia
Year: 2016

description: The current state of practice for seismic design of basement walls in Vancouver is based on the Mononobe-Okabe (M-O) method using a Peak Ground Acceleration (PGA) mandated by the National Building Code of Canada (NBCC, 2010). Because there is a little evidence of any significant damage to basement walls during major earthquakes, the Structural Engineers Association of British Columbia (SEABC) became concerned about designing the walls under the code-mandated PGA and set up a task force to review the current procedure for seismic design of basement walls in British Columbia (BC). The University of British Columbia (UBC) was asked to carry out this investigation. This thesis aims to provide solid base for designing the basement walls using an appropriate fraction of the code-mandated PGA in the M-O analyses. To this end, a series of dynamic nonlinear soil--structure interaction analyses are conducted to examine the seismic resistance of typical basement walls designed according to current practice in BC, for different fractions of the code mandated PGA (100% to 50%). The seismic responses of the walls are evaluated by subjecting them to ensembles of ground motions comprised of shallow crustal, deep subcrustal, interface earthquakes from a Cascadia subduction events and near-fault earthquake motions. Input motions are matched to the intensity of the seismic hazard using both spectral and linear scaling techniques. Representative 4-level and 6-level basement walls are analyzed. The nonlinear hysteretic response of the foundation soil is characterized in order to obtain realistic estimates of an interaction between the basement wall and the surrounding soil. In addition, the effects of the local site conditions in terms of geometrical and geological structure of soil deposits underlying the basement structure on the seismic performance of the basement walls are evaluated. The analyses show that current engineering practice for designing basement walls based on the M-O method and using 100% PGA is too conservative. The analyses suggest that a wall designed using 50% to 60% PGA results in an acceptable performance in terms of drift ratio.
Monopoles, three-algebras and ABJM theories with $\N=5,6,8$ supersymmetry
Creators: name: Gustavsson, Andreas
Publisher: name: arXiv
Year: 2010
Subjects: subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: We extend the hermitian three-algebra formulation of ABJM theory to include $U(1)$ factors. With attention payed to extra $U(1)$ factors, we refine the classification of $\N=6$ ABJM theories. We argue that essentially the only allowed gauge groups are $SU(N)\times SU(N)$, $U(N)\times U(M)$ and $Sp(N)\times U(1)$ and that we have only one independent Chern-Simons level in all these cases. Our argument is based on integrality of the $U(1)$ Chern-Simons levels and supersymmetry. A relation between monopole operators and Wilson lines in Chern-Simons theory suggests certain gauge representations of the monopole operators. From this we classify cases where we can not expect enhanced $\N=8$ supersymmetry. We also show that there are two equivalent formulations of $\N=5$ ABJM theories, based on hermitian three-algebra and quaternionic three-algebra respectively. We suggest properties of monopoles in $\N=5$ theories and show how these monopoles may enhance supersymmetry from $\N=5$ to $\N=6$.
description: 52 pages
Supplementary Material from Loss of an apex predator in the wild induces physiological changes in prey
Creators: name: Hammerschlag, Neil
name: Fallows, Chris
name: Meÿer, Michael
name: Seakamela, Simon Mduduzi
name: Orndorff, Samantha
name: Kirkman, Steve
name: Kotze, Deon
name: Creel, Scott
Publisher: name: The Royal Society
Year: 2022
Subjects: subject: Ecology
subject: FOS: Biological sciences

description: This file contains supplimentary methodology as referenced in the main text.
Generation of full-length circular RNA libraries for Oxford Nanopore long-read sequencing
Creators: name: Fuchs, Steffen
name: Babin, Loélia
name: Andraos, Elissa
name: Bessiere, Chloé
name: Willier, Semjon
name: Schulte, Johannes H.
name: Gaspin, Christine
name: Meggetto, Fabienne
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2022
Subjects: subject: Oxford Nanopore long-read sequencing
subject: full-length circular RNA libraries
subject: gene expression regulation
subject: circRNAs
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Circular RNA (circRNA) is a noncoding RNA class with important implications for gene expression regulation, mostly by interaction with other RNA species or RNA-binding proteins. While the commonly applied short-read Illumina RNA-sequencing techniques can be used to detect circRNAs, their full sequence is not revealed. However, the complete sequence information is needed to analyze potential interactions and thus the mechanism of action of circRNAs. Here, we present an improved protocol to enrich and sequence full-length circRNAs by using the Oxford Nanopore long-read sequencing platform. The protocol involves an enrichment of lowly abundant circRNAs by exonuclease treatment and negative selection of linear RNAs. Then, a cDNA library is created and amplified by PCR. This protocol provides enough material for several sequencing runs. The library is used as input for ligation-based sequencing together with native barcoding. Stringent quality control of the libraries is ensured by a combination of Qubit, Fragment Analyzer and qRT-PCR. Multiplexing of up to 4 libraries yields in total more than 1-2 Million reads per library, of which 1-2% are circRNA-specific reads with > 99% of them full-length. The protocol works well with human cancer cell lines. We further provide suggestions for the bioinformatic analysis of the created data, as well as the limitations of our approach together with recommendations for troubleshooting and interpretation. Taken together, this protocol enables reliable full-length analysis of circRNAs, a noncoding RNA type involved in a growing number of physiologic and pathologic conditions.
Additional file 4 of Assembly and comparative analysis of the first complete mitochondrial genome of Acer truncatum Bunge: a woody oil-tree species producing nervonic acid
Creators: name: Ma, Qiuyue
name: Wang, Yuxiao
name: Li, Shushun
name: Wen, Jing
name: Zhu, Lu
name: Yan, Kunyuan
name: Du, Yiming
name: Ren, Jie
name: Li, Shuxian
name: Chen, Zhu
name: Bi, Changwei
name: Li, Qianzhong
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 4: Figure S4. Agarose gel electrophoresis of PCR product for contig connecting verification
การป้องกันควบคุมโรคไม่ติดต่อโดยยึดชุมชนเป็นฐานในประเทศไทย(พ.ศ. 2547-2552)
Creators: name: เพชราภรณ์ สมบูรณ์บูรณะ
Publisher: name: กองนวัตกรรมและวิจัย กรมควบคุมโรค
Year: 2554
Subjects: โรคไม่ติดต่อ
ฐานชุมชน

description: วารสารควบคุมโรค, 37, 2, 83-92
Structural, mechanical and thermodynamic properties of a coarse-grained DNA model
Creators: name: Ouldridge, Thomas E.
name: Louis, Ard A.
name: Doye, Jonathan P. K.
Publisher: name: arXiv
Year: 2010
Subjects: subject: Biomolecules (q-bio.BM)
subject: FOS: Biological sciences

description: We explore in detail the structural, mechanical and thermodynamic properties of a coarse-grained model of DNA similar to that introduced in Thomas E. Ouldridge, Ard A. Louis, Jonathan P.K. Doye, Phys. Rev. Lett. 104 178101 (2010). Effective interactions are used to represent chain connectivity, excluded volume, base stacking and hydrogen bonding, naturally reproducing a range of DNA behaviour. We quantify the relation to experiment of the thermodynamics of single-stranded stacking, duplex hybridization and hairpin formation, as well as structural properties such as the persistence length of single strands and duplexes, and the torsional and stretching stiffness of double helices. We also explore the model's representation of more complex motifs involving dangling ends, bulged bases and internal loops, and the effect of stacking and fraying on the thermodynamics of the duplex formation transition.
description: 25 pages, 16 figures
Additional file 1 of Admixture with indigenous people helps local adaptation: admixture-enabled selection in Polynesians
Creators: name: Isshiki, Mariko
name: Naka, Izumi
name: Kimura, Ryosuke
name: Nishida, Nao
name: Furusawa, Takuro
name: Natsuhara, Kazumi
name: Yamauchi, Taro
name: Nakazawa, Minato
name: Ishida, Takafumi
name: Inaoka, Tsukasa
name: Matsumura, Yasuhiro
name: Ohtsuka, Ryutaro
name: Ohashi, Jun
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences
subject: Anthropology
subject: FOS: Sociology

description: Additional file 1. Additional figures.
The Cistercian monastic granges in Szczyrzyc in the 17th to the 20th centuries as presented in the original inventories
Creators: name: Marszalska, Jolanta M.
Publisher: name: Faculty of Architecture, Wrocław University of Technology, Wrocław
Year: 2013
Subjects: Szczyrzyc, Cistercians, monastery, economy, granges

description: ARCHITECTUS; ISSN 1429-7507
Additional file 2: of GRIPT: a novel case-control analysis method for Mendelian disease gene discovery
Creators: name: Wang, Jun
name: Zhao, Li
name: Wang, Xia
name: Chen, Yong
name: Xu, Mingchu
name: Soens, Zachry
name: Ge, Zhongqi
name: Wang, Peter
name: Wang, Fei
name: Chen, Rui
Publisher: name: figshare
Year: 2018
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Biological Sciences not elsewhere classified

description: Figure S1. Benchmark of GRIPT with CADD, REVEL, and DANN scores on 400 Mendelian disease genes. Figure S2. Test the impact of patient cohort sizes with REVEL and DANN scores. Figure S3. Test the impact of population stratification with REVEL and DANN scores. Figure S4. Test the impact of variant frequency filtering with REVEL and DANN scores. Figure S5. The main procedure of simulation analysis. (PDF 3207Â kb)
Additional file 1 of On Jones et al.’s method for extending Bland-Altman plots to limits of agreement with the mean for multiple observers
Creators: name: Christensen, Heidi S.
name: Borgbjerg, Jens
name: Børty, Lars
name: Bøgsted, Martin
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: FOS: Biological sciences
subject: Computational Biology

description: Additional file 1. Derivation of the confidence intervals for the LOAM.
Feasibility of Novel Software-Based Perfusion Indicators for the Ileal J-Pouch—On the Path towards Objective and Quantifiable Intraoperative Perfusion Assessment with Indocyanine Green Near-Infrared Fluorescence
Creators: name: Lobbes, Leonard A.
name: Hoveling, Richelle J. M.
name: Berns, Susanne
name: Schmidt, Leonard R.
name: Strobel, Rahel M.
name: Schineis, Christian
name: Lauscher, Johannes C.
name: Beyer, Katharina
name: Weixler, Benjamin
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2022
Subjects: subject: J-pouch
subject: IPAA
subject: anastomotic leak
subject: ulcerative colitis
subject: restorative proctocolectomy
subject: perfusion assessment
subject: indocyanine green
subject: ICG
subject: near-infrared fluorescence
subject: pixel-to-pixel perfusion mapping
subject: perfusion-time curve
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Background: In restorative proctocolectomy with ileal J-pouch, perfusion assessment is vital to prevent complications such as anastomotic leak (AL). Indocyanine green near-infrared fluorescence (ICG-NIRF) is gaining popularity, while its interpretation and relevance remain subjective. This study aimed to evaluate a standardized ICG-NIRF imaging protocol combined with a novel, software-based assessment to detect areas of impaired perfusion and a possible correlation with AL of the pouch. Methods: In this prospective study, patients undergoing ileal J-pouch for ulcerative colitis at an inflammatory bowel disease (IBD) referral center were included. Intraoperatively, strictly standardized ICG-NIRF visualization was performed and video-recorded. Postoperatively, a specific software was utilized to determine the change in fluorescence intensity per second (i/s) for systematic regions of interest, generating perfusion-time curves and a pixel-to-pixel map. These were analysed in detail and correlated with clinical outcome (primary end point: AL within 30 days; clearly defined and screened for by pouchoscopy). Results: Four out of 18 included patients developed AL of the ileal pouch-anal anastomosis (IPAA). In the AL group, the perfusion curves on the area adjacent to the IPAA (pouch apex) displayed considerably lower ingress/inflow (median = 1.7; range = 8.5; interquartile-range = 3.8 i/s) and egress/outflow (median = -0.1; range = 0.7; interquartile-range = 0.5 i/s) values than in the non-AL group (ingress: median = 4.3; range = 10.3; interquartile-range = 4.0 i/s); egress: median = (-1.1); range = 3.9; interquartile range = 1.0 i/s). This was confirmed by further novel parameters of pouch perfusion (maximum ingress; maximum egress) and pixel-to-pixel analysis. Conclusions: This study presents the feasibility of a novel methodology to precisely assess pouch perfusion with ICG-NIRF, identifying comparable, quantifiable, and objective parameters to potentially detect perfusion-associated complications in surgery in real-time.
Additional file 3 of On Jones et al.’s method for extending Bland-Altman plots to limits of agreement with the mean for multiple observers
Creators: name: Christensen, Heidi S.
name: Borgbjerg, Jens
name: Børty, Lars
name: Bøgsted, Martin
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: FOS: Biological sciences
subject: Computational Biology

description: Additional file 3. Derivation of confidence intervals for the variance parameters.
Gardens of the former Cistercian Abbey of the Virgin Mary and Saint Nicholas in Ląd
Creators: name: Nowiński, Janusz
Publisher: name: Faculty of Architecture, Wrocław University of Technology, Wrocław
Year: 2013
Subjects: Ląd by the Warta River, gardens' history, Cistercian gardens, Cistercians

description: ARCHITECTUS; ISSN 1429-7507
Itinerant Ferromagnetism in ultracold Fermi gases
Creators: name: Heiselberg, Henning
Publisher: name: arXiv
Year: 2010
Subjects: subject: Quantum Gases (cond-mat.quant-gas)
subject: FOS: Physical sciences

description: Itinerant ferromagnetism in cold Fermi gases with repulsive interactions is studied applying the Jastrow-Slater approximation generalized to finite polarization and temperature. For two components at zero temperature a second order transition is found at $ak_F\simeq0.90$ compatible with QMC. Thermodynamic functions and observables such as the compressibility and spin susceptibility and the resulting fluctuations in number and spin are calculated. For trapped gases the resulting cloud radii and kinetic energies are calculated and compared to recent experiments. Spin polarized systems are recommended for effective separation of large ferromagnetic domains. Collective modes are predicted and tri-critical points are calculated for multi-component systems.
description: 8 pages, 6 figures
Additional file 4 of On Jones et al.’s method for extending Bland-Altman plots to limits of agreement with the mean for multiple observers
Creators: name: Christensen, Heidi S.
name: Borgbjerg, Jens
name: Børty, Lars
name: Bøgsted, Martin
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: FOS: Biological sciences
subject: Computational Biology

description: Additional file 4. Formulae after removing the observer effect.
Additional file 2 of On Jones et al.’s method for extending Bland-Altman plots to limits of agreement with the mean for multiple observers
Creators: name: Christensen, Heidi S.
name: Borgbjerg, Jens
name: Børty, Lars
name: Bøgsted, Martin
Publisher: name: figshare
Year: 2020
Subjects: subject: Biochemistry
subject: Space Science
subject: Medicine
subject: Pharmacology
subject: Biotechnology
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: FOS: Biological sciences
subject: Computational Biology

description: Additional file 2. Coverage probabilities from a small simulation study.
HAT-P-28b and HAT-P-29b: Two Sub-Jupiter Mass Transiting Planets
Creators: name: Buchhave, L. A.
name: Bakos, G. A.
name: Hartman, J. D.
name: Torres, G.
name: Latham, D. W.
name: Andersen, J.
name: Kovacs, G.
name: Noyes, R. W.
name: Shporer, A.
name: Esquerdo, G. A.
name: Fischer, D. A.
name: Johnson, J. A.
name: Marcy, G. W.
name: Howard, A. W.
name: Beky, B.
name: Sasselov, D. D.
name: Furesz, G.
name: Quinn, S. N.
name: Stefanik, R. P.
name: Szklenar, T.
name: Berlind, P.
name: Calkins, M. L.
name: Lazar, J.
name: Papp, I.
name: Sari, P.
Publisher: name: arXiv
Year: 2011
Subjects: subject: Earth and Planetary Astrophysics (astro-ph.EP)
subject: FOS: Physical sciences

description: We present the discovery of two transiting exoplanets. HAT-P-28b orbits a V=13.03 G3 dwarf star with a period P = 3.2572 d and has a mass of 0.63 +- 0.04 MJ and a radius of 1.21 + 0.11 -0.08 RJ yielding a mean density of 0.44 +- 0.09 g cm-3. HAT-P-29b orbits a V=11.90 F8 dwarf star with a period P = 5.7232 d and has a mass of 0.78 +0.08 -0.04 MJ and a radius of 1.11 +0.14 -0.08 RJ yielding a mean density of 0.71 +- 0.18 g cm-3. We discuss the properties of these planets in the context of other known transiting planets.
description: 10 pages, 9 figures, submitted to ApJ on 17 January, 2011, accepted 24 March, 2011
Disorder induced brittle to quasi-brittle transition in fiber bundles
Creators: name: Karpas, Ehud
name: Kun, Ferenc
Publisher: name: arXiv
Year: 2011
Subjects: subject: Disordered Systems and Neural Networks (cond-mat.dis-nn)
subject: FOS: Physical sciences

description: We investigate the fracture process of a bundle of fibers with random Young modulus and a constant breaking strength. For two component systems we show that the strength of the mixture is always lower than the strength of the individual components. For continuously distributed Young modulus the tail of the distribution proved to play a decisive role since fibers break in the decreasing order of their stiffness. Using power law distributed stiffness values we demonstrate that the system exhibits a disorder induced brittle to quasi-brittle transition which occurs analogously to continuous phase transitions. Based on computer simulations we determine the critical exponents of the transition and construct the phase diagram of the system.
description: 6 pages, 6 figures
Following the route of Cistercians from Silesia to the General Chapter in Cîteaux in 1768
Creators: name: Galar, Anna
Publisher: name: Faculty of Architecture, Wrocław University of Technology, Wrocław
Year: 2013
Subjects: Cistercians, General Chapter, Henryków, Cîteaux, travels

description: ARCHITECTUS; ISSN 1429-7507
The Exhibition of the Modernist Ceramics by Richard Blumenfeld in Ofen- und Keramikmuseum Velten (Germany)
Creators: name: Kirschke, Krystyna
name: Kirschke, Paweł
Publisher: name: Faculty of Architecture, Wrocław University of Technology, Wrocław
Year: 2013
Subjects: Richard Blumenfeld, Ofen-und Keramikmuseum Velten, modernism, art déco, ceramic building materials

description: ARCHITECTUS; ISSN 1429-7507
Additional file 1 of Lower versus higher hemoglobin threshold for transfusion in ARDS patients with and without ECMO
Creators: name: Hunsicker, O.
name: Materne, L.
name: Bünger, V.
name: Krannich, A.
name: Balzer, F.
name: Spies, C.
name: Francis, R. C.
name: Weber-Carstens, S.
name: Menk, M.
name: Graw, J. A.
Publisher: name: figshare
Year: 2020
Subjects: subject: Medicine
subject: Physiology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: 60506 Virology
subject: Computational Biology

description: Additional file 1. Supplemental material including supplemental Methods, Table, and Figures.
Development of an automatic text-based (inter)disciplinary classification of projects and publications using NLP
Creators: name: Florian Kotschka
name: Rolf Guescini
name: Alshawaf, Fadwa
Publisher: name: Zenodo
Year: 2023
Subjects: Document Classification, NLP, Ontologies, VIVO

description: The approach of analyzing and classifying research projects and outputs using texts available on websites as well as the collection of archived research papers can play an important role in structuring and presenting research information. Natural language processing (NLP) and OpenAI has the potential of significantly reducing the effort and time with the growing need of documenting research information. We have been working on the subject of classifying research papers and projects within the frame work of the BUA-VIVO-Project. Florian Kotschka and Rolf Guescini from the VIVO Team would present and discuss the achieved results with the community. 
Here is the Link to the Video and the project website.
Calcific prepatellar bursitis - \'housemaid\'s knee\'
Creators: name: Kalovidouri, Anastasia Maria
Publisher: name: EURORAD
Year: 2013
Subjects: subject: Emergency
subject: Extremities
subject: Musculoskeletal soft tissue
subject: Plain radiographic studies
subject: Diagnostic procedure
subject: Calcifications / Calculi
subject: Occupational / Environmental hazards

description: Clinical History Image Findings Discussion Find Diagnosis Differential Diagnosis
description: female, 67 years
description: Clinical History: A 67-year-old female patient presented to our institution with bilateral painless knee swelling. Her previous medical history was unremarkable. Final Diagnosis: Calcific prepatellar bursitis - "housemaid's knee"
Interprofessional peer-assisted learning and tutor training practices in health professions education–A snapshot of Germany
Creators: name: Herinek, Doreen
name: Woodward-Kron, Robyn
name: Huber, Marion
name: Helmer, Stefanie M.
name: Körner, Mirjam
name: Ewers, Michael
Publisher: name: Charité - Universitätsmedizin Berlin
Year: 2022
Subjects: subject: peer-assisted learning
subject: tutor training practices
subject: health professions education
subject: 600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit

description: Peer-assisted learning (PAL)-especially peer tutorials-are gaining momentum in health professions education, particularly in interprofessional education. As little is known about the use of peer tutorials or the preparation of tutors in this context in Germany and in other countries, this study aims to provide an overview of these interventions. A cross-sectional study with a descriptive-exploratory design was conducted. German institutions for health professions education were contacted, and individuals with pedagogical responsibilities were invited to participate in an online survey. The survey was informed by two studies in which seven domains were identified as important. These included facts about the institution, the offer of PAL, the use of tutorials, and the design of tutor training. The survey used mostly closed-ended questions. The questionnaire was completed by n = 100 participants. Overall, n = 46 participants indicated that PAL was offered at their institution. Of these 46 participants, 32 (70%) indicated that uniprofessional PAL was offered, 2 (4%) indicated that interprofessional PAL was offered, and 12 (26%) indicated that both forms of PAL were offered. Peer tutoring was the most common format in both cases (73% for uniprofessional and 64% for interprofessional PAL), and mandatory interventions were mostly used to prepare the tutors. These interventions were held by educators or lecturers and were offered mostly face-to-face as workshops or as discussions. Deepening the tutors' social competencies through training was given high relevance. Regarding content, focus was placed on communication, (self-)reflection, and group management. Eighty-eight participants expressed recommendations for future directions in terms of preparing tutors for interprofessional PAL. Minor differences between the use of uniprofessional and interprofessional PAL and tutor training were found. Nevertheless, implementation strategies varied. In future, preparatory measures for tutors should be more uniformly designed and geared to the specific requirements of uniprofessional and interprofessional learning, and that at best on an empirical basis.
Retroperitoneal contrast medium extravasation from central venous catheter injection
Creators: name: Tonolini, Massimo
Publisher: name: EURORAD
Year: 2013
Subjects: subject: Veins / Vena cava
subject: CT
subject: Acceptance testing
subject: Complications
subject: Drugs / Reactions

description: Clinical History Image Findings Discussion Find Diagnosis Differential Diagnosis
description: female, 56 years
description: Clinical History: A 56-year-old woman with an ileostomy following Hartmann sigmoid colon resection of acute diverticulitis and failed recanalisation surgery 6 months earlier was hospitalised with malnutrition state and diarrhoea from Clostridium difficile enterocolitis. La... Final Diagnosis: Retroperitoneal iodinated contrast medium extravasation femoral central venous catheter injection
Water in Star-Forming Regions with the Herschel Space Observatory (WISH): Overview of key program and first results
Creators: name: van Dishoeck, E. F.
name: Kristensen, L. E.
name: Benz, A. O.
name: Bergin, E. A.
name: Caselli, P.
name: Cernicharo, J.
name: Herpin, F.
name: Hogerheijde, M. R.
name: Johnstone, D.
name: Liseau, R.
name: Nisini, B.
name: Shipman, R.
name: Tafalla, M.
name: van der Tak, F.
name: Wyrowski, F.
Publisher: name: arXiv
Year: 2010
Subjects: subject: Astrophysics of Galaxies (astro-ph.GA)
subject: FOS: Physical sciences

description: `Water In Star-forming regions with Herschel' (WISH) is a key program on the Herschel Space Observatory designed to probe the physical and chemical structure of young stellar objects using water and related molecules and to follow the water abundance from collapsing clouds to planet-forming disks. About 80 sources are targeted covering a wide range of luminosities and evolutionary stages, from cold pre-stellar cores to warm protostellar envelopes and outflows to disks around young stars. Both the HIFI and PACS instruments are used to observe a variety of lines of H2O, H218O and chemically related species. An overview of the scientific motivation and observational strategy of the program is given together with the modeling approach and analysis tools that have been developed. Initial science results are presented. These include a lack of water in cold gas at abundances that are lower than most predictions, strong water emission from shocks in protostellar environments, the importance of UV radiation in heating the gas along outflow walls across the full range of luminosities, and surprisingly widespread detection of the chemically related hydrides OH+ and H2O+ in outflows and foreground gas. Quantitative estimates of the energy budget indicate that H2O is generally not the dominant coolant in the warm dense gas associated with protostars. Very deep limits on the cold gaseous water reservoir in the outer regions of protoplanetary disks are obtained which have profound implications for our understanding of grain growth and mixing in disks.
description: 71 pages, 10 figures, PASP, in press
Additional file 1 of A multimodal mentorship intervention to improve surgical quality in Tanzania’s Lake Zone: a convergent, mixed methods assessment
Creators: name: Alidina, Shehnaz
name: Tibyehabwa, Leopold
name: Alreja, Sakshie Sanjay
name: Barash, David
name: Bien-Aime, Danta
name: Cainer, Monica
name: Charles, Kevin
name: Ernest, Edwin
name: Eyembe, Joachim
name: Fitzgerald, Laura
name: Giiti, Geofrey C.
name: Hellar, Augustino
name: Hussein, Yahaya
name: Kahindo, Furaha
name: Kenemo, Benard
name: Kihunrwa, Albert
name: Kisakye, Steve
name: Kissima, Innocent
name: Meara, John G.
name: Reynolds, Cheri
name: Staffa, Steven J.
name: Sydlowski, Meaghan
name: Varallo, John
name: Zanial, Noor
name: Kapologwe, Ntuli A.
name: Mayengo, Caroline Damian
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Biotechnology
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Additional file 1: Mentorship survey.
Additional file 8 of Assembly and comparative analysis of the first complete mitochondrial genome of Acer truncatum Bunge: a woody oil-tree species producing nervonic acid
Creators: name: Ma, Qiuyue
name: Wang, Yuxiao
name: Li, Shushun
name: Wen, Jing
name: Zhu, Lu
name: Yan, Kunyuan
name: Du, Yiming
name: Ren, Jie
name: Li, Shuxian
name: Chen, Zhu
name: Bi, Changwei
name: Li, Qianzhong
Publisher: name: figshare
Year: 2022
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 8: Table S4. Details regarding the mitochondira genome sequences used for the phylogenetic analysis.