cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
GENEMASK: Fast Pretraining of Gene Sequences to Enable Few-Shot Learning
Creators: name: Roy, Soumyadeep
name: Wallat, Jonas
name: Sundaram, Sowmya S.
name: Nejdl, Wolfgang
name: Ganguly, Niloy
Publisher: name: Amsterdam ; Berlin ; Washington, DC : IOS Press
Year: 2023
Subjects: subject: Classification (of information)
subject: Computational linguistics
subject: Genes
subject: Genome
subject: Modeling languages
subject: Gene representation
subject: Gene sequences
subject: Language model
subject: Large-scales
subject: Learn+
subject: Model training
subject: Pre-training
subject: Simple++
subject: Sliding Window
subject: Tokenization Schemes
subject: Semantics
subject: Konferenzschrift
subject: Dewey Decimal Classification::000 | Allgemeines, Wissenschaft::000 | Informatik, Wissen, Systeme::004 | Informatik

description: Large-scale language models such as DNABert and LOGO aim to learn optimal gene representations and are trained on the entire Human Reference Genome. However, standard tokenization schemes involve a simple sliding window of tokens like k-mers that do not leverage any gene-based semantics and thus may lead to (trivial) masking of easily predictable sequences, and subsequently inefficient Masked Language Modeling (MLM) training. Therefore, we propose a novel masking algorithm, GENEMASK, for MLM training of gene sequences, where we randomly identify positions in a gene sequence as mask centers and locally select the span around the mask center with the highest Normalized Pointwise Mutual Information (NPMI) to mask. We observe that in the absence of human-understandable semantics in the genomics domain (in contrast, semantic units like words and phrases are inherently available in NLP), GENEMASK-based models substantially outperform the SOTA models (DNABert and LOGO) over four benchmark gene sequence classification datasets in five few-shot settings (10 to 1000-shot). More significantly, the GENEMASK-based DNABert model is trained for less than one-tenth of the number of epochs of the original SOTA model. We also observe a strong correlation between top-ranked PMI tokens and conserved DNA sequence motifs, which may indicate the incorporation of latent genomic information. The codes (including trained models) and datasets are made publicly available at https://github.com/roysoumya/GeneMask.
Additional file 5: Table S5. of The epidemiologic characteristics of healthcare provider-diagnosed eczema, asthma, allergic rhinitis, and food allergy in children: a retrospective cohort study
Creators: name: Hill, David
name: Grundmeier, Robert
name: Ram, Gita
name: Spergel, Jonathan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Pharmacology
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Analysis of asthma medication prescriptions; A table summarizing our analysis of asthma medication prescription practices and diagnosis codes. (PDF 208 kb)
Optimizing micro gas turbine operation in a microgrid system with natural gas and hydrogen fuel: an AI-based approach
Creators: name: Banihabib, Reyhaneh
name: Fadnes, Fredrik Skaug
name: Assadi, Mohsen
name: Bensmann, Boris
Publisher: name: New York, N.Y. : the American Society of Mechanical Engineers
Year: 2023
Subjects: subject: AI
subject: Data-driven
subject: hydrogen storage
subject: hydrogen-enriched fuel
subject: micro gas turbine
subject: Microgrid
subject: operation optimization
subject: Konferenzschrift
subject: Dewey Decimal Classification::600 | Technik::620 | Ingenieurwissenschaften und Maschinenbau::621 | Angewandte Physik::621,3 | Elektrotechnik, Elektronik

description: In the coming years, decentralized power generation systems with renewables are expected to take a leading role, and micro gas turbines will serve as backup sources to compensate for times of low inputs from other sources. In order to deal with the unpredictable energy inputs from renewables, the micro gas turbine must be capable of running under varying load conditions and making fast transitions between them. The operation of a micro gas turbine in an integrated microgrid has the potential to reduce operational costs and ensure the delivery of demanded heat and power to consumers. This paper investigates the operation of a micro gas turbine in a microgrid, serving as a supplementary power source for a municipal building. The building's required energy is initially provided by wind turbine power, and the micro gas turbine serves as a backup source during times of wind power deficiency. The micro gas turbine can operate using a natural gas/hydrogen fuel blend ranging from zero to 100% hydrogen. Furthermore, a water electrolyzer with a hydrogen tank is available to operate as a storage system within the microgrid. The study's results demonstrate the economic and environmental benefits of using hydrogen storage and optimizing operational planning in the microgrid. The primary objective of the paper is to highlight the feasibility and benefits of employing micro gas turbines and hydrogen storage systems within a microgrid as a renewable energy backup power source.
Additional file 1: Table S1. of The epidemiologic characteristics of healthcare provider-diagnosed eczema, asthma, allergic rhinitis, and food allergy in children: a retrospective cohort study
Creators: name: Hill, David
name: Grundmeier, Robert
name: Ram, Gita
name: Spergel, Jonathan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Computational Biology

description: ICD9 codes by diagnosis group; A table of ICD9 codes used to define each diagnosis group. (PDF 318 kb)
Ontherus gilli Genier 1996
Creators: name: Rosa, Cecilia Lozano De La
name: Cupello, Mario
name: Vaz-De-Mello, Fernando Z.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Ontherus
Ontherus gilli

description: Ontherus gilli Génier, 1996
Fig. 56B–C
Ontherus (Caelontherus) gilli Génier, 1996: 28 (original description). Type locality: Venezuela: Táchira: San Cristóbal. Name-bearing type: holotype (CMNC), not examined.
Ontherus gilli – Krajcik 2012: 174 (list). — Ferrer-Paris et al. 2013: 109 (list). — Gonzáles & Medina 2015: 80‒90 (new record for Colombia).
Material examined
VENEZUELA • 1 spec.; no further data; CEMT. ‒ Mérida • 1 spec.; Santo Domingo, NM27-T078; 13 Jul. 2006; curso NM2006 leg.; faeces, 22h-07:41; CEMT • 2 specs; Sucre, Jají; 8°40′27.98″ N, 71°25′3.53″ W; 1849 m a.s.l.; 7 Jul. 2009; D. Mora, P. Colmenares, M. Córdova and M. Nuñez leg.; minced meat; CEMT • 4 specs; same data as for preceding except for the elevation and date; 1864 m a.s.l.; 8 Jul. 2009; CEMT. ‒ Yaracuy • 1 spec.; Bolívar, Aroa; 10°22′9.37″ N, 68°50′19.35″ W; 1624 m a.s.l.; 19 Jul. 2009; M. Asmüssen, P. Colmenares and H. Martínez leg.; human faeces; CEMT.
Distribution
Colombia and Venezuela.
Subregions of Venezuela
Andes mountains and Central Coast Mountain Range.
Literature records
Génier 1996: 28 (Venezuela: Mérida and Táchira). — Krajcik 2012: 174 (Venezuela). — Ferrer-Paris et al. 2013: 109 (Venezuela: Mérida: La Azulita-Jají).
description: Published as part of Rosa, Cecilia Lozano De La, Cupello, Mario & Vaz-De-Mello, Fernando Z., 2024, The dung beetles of Venezuela (Coleoptera: Scarabaeidae: Scarabaeinae): catalogue and updated distribution, pp. 1-272 in European Journal of Taxonomy 959 (1) on pages 145-147, DOI: 10.5852/ejt.2024.959.2677, http://zenodo.org/record/13945464
Additional file 2: of An experimental study exploring the impact of vignette gender on the quality of university studentsâ   mental health first aid for peers with symptoms of depression
Creators: name: E. Davies
name: Wardlaw, John
name: Morriss, Richard
name: Glazebrook, Cris
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Neuroscience
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: Science Policy
subject: 111714 Mental Health
subject: FOS: Health sciences

description: Descriptive data showing the coded scores for each MHFA action, subgrouped by 1) participant gender X vignette gender condition; 2) participant gender; and 3) type of degree studied. (PDF 19.3 kb)
Additional file 1: of Bioelectric memory: modeling resting potential bistability in amphibian embryos and mammalian cells
Creators: name: Law, Robert
name: Levin, Michael
Publisher: name: Figshare
Year: 2015
Subjects: subject: Cell Biology
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology

description: Supplementary Materials. (PDF 261 kb)
Toxorhina (Ceratocheilus) huanglica Zhang, Li & Yang 2015
Creators: name: Lv, Hanhuiying
name: Xu, Yuanyuan
name: Liu, Shulin
name: Li, Linghui
name: Lin, Kejian
name: Zhang, Xiao
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Diptera
Limoniidae
Toxorhina
Toxorhina huanglica

description: Toxorhina (Ceratocheilus) huanglica Zhang, Li & Yang, 2015
Fig. 3
Toxorhina (Ceratocheilus) huanglica Zhang, Li & Yang, 2015 in Zhang et al. 2015: 67. Type locality: China, Yunnan, Lvchun, Huanglianshan, Qimaba.
Specimens examined.
China • 1 ♂; Yunnan Province, Mengla County, Xishuangbanna Tropical Rainforest Nature Reserve, Wangtianshu Scenic Spot; 661 m a. s. l.; 21.5090 ° N, 101.6003 ° E; 9 July 2016; Qingxia Zhou leg.; light trap; CAU.
Diagnosis.
Prescutum and presutural scutum brownish-yellow with three broad dark brown longitudinal stripes. Pleuron dark yellow with two black longitudinal stripes. Wing with cell d closed. R 4 ending slightly beyond end of basal section of R 5, m-cu at or slightly before fork of M. Gonocoxite with 1 gonostylus. Gonocoxite dorsally with a blunt, basal lobe covered with numerous setae. Interbase elongated, rod-shaped. Tip of aedeagus bifid with arms short and divergent.
Description.
Male. Hypopygium (Fig. 3). Tergite 9 brown with dark brown setae, posterior margin medially with U-shaped deep incision and two translucent areas on both sides (Fig. 3 A, F). Gonocoxite dark brown, conical with tip round; dorsal face with a blunt, basal lobe covered with numerous stout setae (Fig. 3 A, G); setae on gonocoxite brownish-black (Fig. 3 A, B). Gonostylus brown, curved inwards at middle, basal half stout with a longitudinal groove, distal half slender with tip round; outer side of middle with outwardly curved spine (Fig. 3 A, B, H). Interbase dark brown, elongated, rod-shaped, about 10 times as long as wide; tip inflated and round (Fig. 3 A – C, E). Parameres brownish-black, medially arched fused, distal connecting to base of interbase (Fig. 3 C – E). Ejaculatory apodeme brown with middle brownish-black, sheet-like, base narrow (Fig. 3 C – E). Aedeagus dark brown, stout at base, tip bifid with arms short and divergent (Fig. 3 A – C, E, I).
Distribution.
China (Yunnan) (Oosterbroek 2023).
Behavior.
The species can be attracted by light.
Remarks.
The species was originally described and illustrated by Zhang et al. (2015) based on material collected in China. A more detailed description and illustration of the male hypopygium of this species are provided in this study.
description: Published as part of Lv, Hanhuiying, Xu, Yuanyuan, Liu, Shulin, Li, Linghui, Lin, Kejian & Zhang, Xiao, 2024, An updated review of the genus Toxorhina Loew, 1850 (Diptera, Limoniidae) from Yunnan, China with a description of a new species, pp. 191-204 in ZooKeys 1205 on pages 191-204, DOI: 10.3897/zookeys.1205.117807
Additional file 2: Tables S1 to S3. of Comparative genomics and metabolic profiling of the genus Lysobacter
Creators: name: Bruijn, Irene De
name: Cheng, Xu
name: Jager, Victor De
name: Expรณsito, Ruth
name: Watrous, Jeramie
name: Nrupali Patel
name: Postma, Joeke
name: Dorrestein, Pieter
name: Kobayashi, Donald
name: Raaijmakers, Jos
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Marine Biology

description: (PDF 1962 kb)
Ontherus kirschii Harold 1867
Creators: name: Rosa, Cecilia Lozano De La
name: Cupello, Mario
name: Vaz-De-Mello, Fernando Z.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Ontherus
Ontherus kirschii

description: Ontherus kirschii Harold, 1867
Fig. 57A
Ontherus kirschii Harold, 1867d: 96 (original description). Type locality: Colombia: Cundinamarca: Bogotá. Name-bearing type: lectotype (MNHN), designated by Génier (1996), not examined.
Ontherus elongatus Waterhouse, 1891a: 357 (original description). Type locality: Venezuela. Name-bearing type: holotype (BMNH), not examined.
Ontherus kirschii – Harold 1869a: 503 (comments); 1869c: 59 (comments); 1869d: 1008 (catalogues, cited for “ Bogota ”); 1880: 21 (distribution, comments). — Kirsch 1871: 357 (comments). — Gillet 1911b: 58 (catalog, cited for Colombia). — Luederwaldt 1931a: 396, 399 (key, cited Colombia). — Blackwelder 1944: 206 (list, cited for Colombia). — Escobar 2000: 209 (checklist for Colombia). — Pulido-Herrera et al. 2007: 307 (cited for Andean region of Colombia). — Orozco & Pérez 2008: 38–39 (list for Colombia). — Medina & Pulido-Herrera 2009: 60 (diversity).
Ontherus elongatus – Luederwaldt 1931a: 364, 396, 399 (comments, key). — Blackwelder 1944: 206 (list). — Roze 1955: 44 (cited, checklist for Venezuela). — Havranek 1989: 61 (list). — Génier 1996: 35 (revision, redescription, cited as synonym of O. kirschii).
Ontherus (Caelontherus) kirschii – Génier 1996: 35 (revision, redescription).
Material examined
VENEZUELA ‒ Aragua • 1 spec.; Choroni bei Maracay; 1500 m a.s.l.; 26 Mar. 1995; O. Hillert leg.; CEMT. ‒ Táchira • 2 specs; May 1999; CEMT. ‒ Yaracuy • 2 specs; Bolívar, Aroa; 10°22′9.37″ N, 68°50′19.35″ W; 1624 m a.s.l.; 19 Jul. 2009; M. Asmüssen, P. Colmenares and H. Martínez leg.; human faeces; CEMT.
Distribution
Colombia and Venezuela.
Subregions of Venezuela
Coastal mainland, Plains, Andes mountains, and Central Coast Mountain Range.
Literature records
Gillet 1911b: 58 (Venezuela). — Luederwaldt 1931a: 396, 399, 414, 416 (Venezuela). — Blackwelder 1944: 206 (Venezuela). — Havranek 1989: 61 (Venezuela: Táchira). — Génier 1996: 35 (Venezuela: Aragua, Barinas, Distrito Capital, Táchira and Trujillo).
description: Published as part of Rosa, Cecilia Lozano De La, Cupello, Mario & Vaz-De-Mello, Fernando Z., 2024, The dung beetles of Venezuela (Coleoptera: Scarabaeidae: Scarabaeinae): catalogue and updated distribution, pp. 1-272 in European Journal of Taxonomy 959 (1) on pages 147-149, DOI: 10.5852/ejt.2024.959.2677, http://zenodo.org/record/13945464
Enhancing Vulnerable Road User Awareness of Intelligent Transport Systems Through Relay and Aggregation of Collective Perception Messages with Road Side Units
Creators: name: Wolff, Vincent
Publisher: name: [Setúbal] : Science and Technology Publications
Year: 2023
Subjects: subject: Collaborative Driving
subject: Collective Perception
subject: Road Safety
subject: Road Side Unit
subject: V2I
subject: V2X
subject: Vehicular Adhoc Networks
subject: Vulnerable Road User Awareness
subject: Konferenzschrift
subject: Dewey Decimal Classification::000 | Allgemeines, Wissenschaft::000 | Informatik, Wissen, Systeme::004 | Informatik

description: The Collective Perception Service (CPS) allows connected vehicles to gain a more comprehensive picture of their environment by sharing information about the dynamic state of objects with other vehicles and infrastructure. Objects detected by on-board sensors are shared through Vehicle-to-Vehicle (V2V) or Vehicle-to-Infrastructure (V2I) communication. However, the range of V2V communication is limited, and Road Side Units (RSUs) can be deployed to enhance the range and attenuate the negative effects of V2V signal propagation. We enhance the vehicular network by RSUs to aggregate and forward Collective Perception Messages (CPMs) received from neighboring vehicles, thus improving the overall environmental perception and the perception of Vulnerable Road Users (VRUs) in particular. Our simulation results, based on the ETSI ITS-G5 standard, demonstrate the effectiveness of the CPS in an urban intersection scenario, showing the positive impact of additional V2I communication and the deployment of RSUs on vehicular perception of VRUs. The addition of RSUs results in a significant improvement in VRU perception, while packet loss on the network channel increases moderately.
Comparative investigation of partial cooling methods for induction heating of hybrid bulk components for hot forming
Creators: name: Ince, Caner-Veli
name: Katz, Fabian
name: Raatz, Annika
Publisher: name: Millersville, PA : Materials Research Forum LLC
Year: 2023
Subjects: subject: Form Variable Handling
subject: Function Integrated Handling
subject: Partial Cooling
subject: Tailored Forming
subject: Konferenzschrift
subject: Dewey Decimal Classification::600 | Technik::620 | Ingenieurwissenschaften und Maschinenbau

description: The novel Tailored Forming process chain enables the combination of crucial properties of different materials by manufacturing hybrid components. Thereby, the limitations of monolithic components are surpassed. However, manufacturing hybrid bulk components introduces new challenges for hot forming. For example, when combining steel and aluminium, the main challenge is establishing and maintaining a temperature gradient in the component to match the differing flow stresses of the materials for a successful forging. For establishing the gradient, a particular heating strategy, including inductive heating of the steel and parallel partial cooling of the aluminium, is necessary. After reaching the target temperature, the heated component has to be transferred to the forging die by a robot while maintaining the essential temperature gradient. Therefore, a portable spray nozzle cooling system attached to the robot's end effector was designed in former work. This paper aims to validate spray nozzles for establishing a temperature gradient in a hybrid workpiece with a particular heating strategy compared to a currently used immersion cooling. For the validation, the nozzles will cool a hybrid steel aluminium shaft, whereby the nozzles' operation parameters influence on the temperature gradient will be investigated. Finally, the performance of the nozzles will be compared against the currently used immersion cooling.
Additional file 3: Table S3. of The epidemiologic characteristics of healthcare provider-diagnosed eczema, asthma, allergic rhinitis, and food allergy in children: a retrospective cohort study
Creators: name: Hill, David
name: Grundmeier, Robert
name: Ram, Gita
name: Spergel, Jonathan
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Biotechnology
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Computational Biology

description: ICD9 codes excluded from our analysis; A table of ICD9 codes that were excluded from our analysis. (PDF 210 kb)
Additional file 3: Tables S4 to S15. of Comparative genomics and metabolic profiling of the genus Lysobacter
Creators: name: Bruijn, Irene De
name: Cheng, Xu
name: Jager, Victor De
name: Expรณsito, Ruth
name: Watrous, Jeramie
name: Nrupali Patel
name: Postma, Joeke
name: Dorrestein, Pieter
name: Kobayashi, Donald
name: Raaijmakers, Jos
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: Marine Biology

description: (PDF 877 kb)
Lineage specific inference about QTL evolution among three Mimulus species of contrasting relationship and inbreeding
Creators: name: Chen, Charles
Publisher: name: University of British Columbia
Year: 2009

description: Complex traits including those involved with natural adaptation are determined by the contributions of numerous genes, the environment, and their interactions. Although quantitative trait locus (QTL) mapping approaches have been successful in dissecting complex traits, few studies have adopted a comparative approach of contrasting species pairs that differ in relationship, for the purpose of dissecting evolutionary changes of QTL. Furthermore, no QTL mapping approaches have explicitly inferred QTLs along lineages in a species network. This thesis brings such a comparative approach into QTL mapping. The evolution of inbreeding in the Mimulus guttatus species complex provides an excellent system where lineage-specific QTL changes can be inferred. Three intercrossable species were chosen: M. guttatus, M. platycalyx and M. micranthus, the latter two taxa being independent derived inbreeders from the first one. Five floral characters were selected as representative traits for the evolution of inbreeding in these species. A three-species crossing design was implemented, upon which QTL analyses were conducted. As expected in QTL mapping studies, the estimated number of genetic factors varies among crosses. An important role of dominance in the evolution of selfing from outcrossing taxa is supported by the data, owing to the consistency of directional dominance towards selfing taxa. The extensiveness of epistasis identified in this study suggests that in Mimulus, genes related to floral characters are co-adapted gene complexes, where genetic interdependency evolves as species diverge. Moreover, such genetic interdependency may be a key element in the evolution of stable mixed mating systems. A model for the inference of lineage specific QTL in a three-taxon network is described, and used to infer lineage-specific changes for floral traits among the three Mimulus taxa. After mapping QTL onto lineages, one can determine if QTL at the same map position are homologous (arising in an ancestral lineage leading to two taxa) or non-homologous (arising independently in derived lineages or via convergent evolution). In Mimulus, shared negative QTLs of dominant effect that arise from convergent evolution seem to play a prominent role in the early evolution of inbreeding; then derived, independent changes fine-tune further evolutionary changes of inbreeding.
title: DIALEKTALE SPRACHREALITÄTEN ÜBER CMC-KORPORA ERLEBEN. Das DiDi-Korpus zur internetbasierten Kommunikation aus Südtirol im DaZ-Unterricht
Creators: name: Glaznieks, Aivars
name: Frey, Jennifer-Carmen
Publisher: name: Universitäts- und Landesbibliothek Darmstadt
Year: 2024

description: Der Beitrag stellt das DiDi-Korpus zur internetbasierten Kommunikation (IBK) aus Südtirol (vgl. Frey et al. 2016) vor und diskutiert seinen potenziellen Wert für den DaZ-Unterricht. Das Korpus besteht aus etwa 40.000 Facebooktexten von privaten NutzerInnen und zeigt einen authentischen Ausschnitt der schriftlichen digitalen Kommunikation in Südtirol, die sich neben typischen Merkmalen der IBK auch durch die Nutzung mehrerer Varietäten (z.B. Standarddeutsch und Dialekt) und Sprachen (z.B. Deutsch und Italienisch) auszeichnet (vgl. Glaznieks / Frey 2018). Der Beitrag fokussiert auf den schriftlichen Gebrauch mehrerer Varietäten in der IBK und stellt den soziokulturellen und kommunikativ-pragmatischen Mehrwert des DiDi-Korpus als authentische Sprachressource für DaZ-Lernende heraus.
Additional file 1: Table S1. of Risk of low bone mineral density in patients with rheumatoid arthritis treated with biologics
Creators: name: Takahashi, Kengo
name: Setoguchi, Takao
name: Tawaratsumida, Hiroki
name: Arishima, Yoshiya
name: Tominaga, Hiroyuki
name: Ishidou, Yasuhiro
name: Nagano, Satoshi
name: Shigemizu, Sanae
name: Aoki, Noriko
name: Akimoto, Masaki
name: Otsubo, Hideo
name: Takemasa Matsuda
name: Kakoi, Hironori
name: Izumi, Toshihiko
name: Nakamura, Shunsuke
name: Yokouchi, Masahiro
name: Sunahara, Nobuhiko
name: Setsuro Komiya
Publisher: name: Figshare
Year: 2015
Subjects: subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Biotechnology
subject: Ecology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Plant Biology
subject: Computational Biology

description: Univariate analysis of factors potentially associated with low bone mineral density in patients with rheumatoid arthritis treated with biologics. (DOCX 14 kb)
Harvard HIV and aging workshop: Perspectives and Priorities from Claude D. Pepper Centers and Centers for AIDS Research
Creators: name: Montano, M
name: Bhasin, S
name: D'Aquila, RT
name: Erlandson, KM
name: Evans, WJ
name: Funderburg, NT
name: Justice, A
name: Ndhlovu, LC
name: Ojikutu, B
name: Pahor, M
name: Pahwa, S
name: Ryan, AS
name: Schrack, J
name: Schultz, MB
name: Sebastiani, P
name: Sinclair, DA
name: Tripp, J
name: Walker, B
name: Womack, JA
name: Yung, R
name: Reeves, RK
Publisher: name: Mary Ann Liebert
Year: 2019
Subjects: HIV
aging
frailty
immune activation
Aged
Aging
Biomedical Research
Cardiovascular Diseases
Cognition
Comorbidity
Congresses as Topic
Frail Elderly
Geriatrics
HIV Infections
Humans
Hypertension
Male

description: People aging with HIV (PAWH) infection experience greater impairments in physical and cognitive function, in addition to higher rates of peripheral comorbid conditions (e.g., renal failure, diabetes, bone fracture, hypertension, cardiovascular disease, polypharmacy, and multimorbidity). While multifactorial drivers, including HIV infection itself, antiretroviral therapy-related toxicities, disparities in care, and biobehavioral factors, likely contribute, there remains an overarching question as to what are the relevant age-related mechanisms and models that could inform interventions that promote health span and life span in PAWH This workshop was convened to hear from experts on the biology of aging and HIV researchers studying PAWH to focus on advancing investigations at the interface of HIV and Aging. In this study, we summarize the discussions from the Harvard Center for AIDS Research and Boston Claude D. Pepper cosponsored workshop on HIV and Aging, which took place in October 2018.
Design of a forging process to individually examine thermal, mechanical and tribological stress in the tool surface zone
Creators: name: Behrens, Bernd-Arno
name: Müller, Fellix
name: Lorenz, Uwe
Publisher: name: Millersville, PA : Materials Research Forum LLC
Year: 2023
Subjects: subject: Forging Die
subject: Numerical Investigation
subject: Online Measurement
subject: Temperature Monitoring
subject: Tool Design
subject: Konferenzschrift
subject: Dewey Decimal Classification::600 | Technik::620 | Ingenieurwissenschaften und Maschinenbau

description: The surface layer of hot forging tools undergoes local microstructural changes due to high thermo-mechanical and tribological loads. Tools made of hot working steel are usually preheated and experience extreme heating and cooling during each forging cycle, affecting their local wear behaviour significantly. Therefore, the analysis of these tool surface layers in die forging and their effect on wear behaviour is of great importance. The microstructural changes in the tool surface layer mainly depend on thermal loads, which are highly influenced by the tool cooling system. A process and a suitable tool system are developed to vary the thermal and mechanical loads on the tool surface layer and fundamentally examine the resulting microstructural changes.
Ontherus lichyi Martinez 1947
Creators: name: Rosa, Cecilia Lozano De La
name: Cupello, Mario
name: Vaz-De-Mello, Fernando Z.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Ontherus
Ontherus lichyi

description: Ontherus lichyi Martínez, 1947
Fig. 57B
Ontherus lichyi Martínez, 1947c: 45 (original description). Type locality: Venezuela: Carabobo: Borburata River valley, 675 m a.s.l. Name-bearing type: holotype (MACN), examined by MC.
Ontherus mirandai Pereira, 1954b: 461 (original description). Type locality: Brazil: Amazonas: Rio Negro. Name-bearing type: holotype (MZSP), not examined.
Ontherus lichyi – Roze 1955: 44 (cited, checklist for Venezuela). — Pereira & Martínez 1960: 49 (distribution). — Vulcano & Pereira 1967: 582 (key). — Blanco 1987: 44 (catalogue). — Escobar 2000: 209 (checklist for Colombia). — Medina et al. 2001: 139 (checklist for Colombia). — Noriega et al. 2007: 81 (list for Colombia). — Pulido-Herrera et al. 2007: 307 (cited for Andean region of Colombia). — Medina & Pulido-Herrera 2009: 60 (diversity). — Krajcik 2012: 174 (list).
Ontherus mirandai – Pereira & Martínez 1960: 49 (cited as synonym of Ontherus lichyi).
Ontherus (Ontherus) lichyi – Génier 1996: 100 (revision, redescription). — Vaz-de-Mello 2000: 194 (checklist for Brazil). — Hielkema & Hielkema 2019: 57 (catalogue for the Guianas).
Material examined
Paratype
VENEZUELA ‒ 1 ♂; “VENEZUELA/ E° CARABOBO / Valle Rio Borhu _/ rata, 670 m. alt./ R. Lichylegit:/ Jul-941”; “ Ontherus / lichyi / sp. n./ A. Martínez-DET.1946/ ♂”; “ PARATIPO ”; CEMT / CUIABÁ/ 00078190.
Additional material
VENEZUELA ‒ Miranda • 1 spec.; Altos de Pipe, Instituto Venezolano de Investigaciones Científicas (“Campus IVIC”); 10°23′51″ N, 66°58′15″ W; 1500 m a.s.l.; Jul. 2009; F.Z. Vaz-de-Mello leg.; CEMT.
Distribution
Colombia, Venezuela, Suriname, French Guiana, and Brazil.
Subregion of Venezuela
Central Coast Mountain Range.
Literature records
Vulcano & Pereira 1967: 582 (Venezuela). — Blanco 1987: 44 (Venezuela: Táchira). — Génier 1996: 100 (Venezuela: Carabobo and Distrito Capital). — Krajcik 2012: 174 (Venezuela).
description: Published as part of Rosa, Cecilia Lozano De La, Cupello, Mario & Vaz-De-Mello, Fernando Z., 2024, The dung beetles of Venezuela (Coleoptera: Scarabaeidae: Scarabaeinae): catalogue and updated distribution, pp. 1-272 in European Journal of Taxonomy 959 (1) on page 149, DOI: 10.5852/ejt.2024.959.2677, http://zenodo.org/record/13945464
Additional file 1 of Validation of the Charlson Comorbidity Index for the prediction of 30-day and 1-year mortality among patients who underwent hip fracture surgery
Creators: name: de Haan, Eveline
name: van Oosten, Benthe
name: van Rijckevorsel, Veronique. A. J. I. M.
name: Kuijper, T. Martijn
name: de Jong, Louis
name: Roukema, Gert R.
Publisher: name: figshare
Year: 2024
Subjects: subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Physiology
subject: Chemical Sciences not elsewhere classified
subject: Ecology
subject: Sociology
subject: FOS: Sociology
subject: Biological Sciences not elsewhere classified
subject: Science Policy

description: Supplementary Material 1.
Improved failure characterisation of high-strength steel using a butterfly test rig with rotation control
Creators: name: Stockburger, Eugen
name: Wester, Hendrik
name: Jegatheeswaran, Vithusaan
name: Dykiert, Matthäus
name: Behrens, Bernd-Arno
Publisher: name: Millersville, PA : Materials Research Forum LLC
Year: 2023
Subjects: subject: Butterfly Specimen
subject: CP800
subject: Experimental-Numerical Procedure
subject: Konferenzschrift
subject: Dewey Decimal Classification::600 | Technik::620 | Ingenieurwissenschaften und Maschinenbau

description: A forming limit diagram is the standard method to describe the forming capacity of sheet materials. It predicts failure due to necking by limiting major and minor strains. For failure due to fracture, the fracture forming limit diagram is used, but fracture caused by plastic deformation at a shear-dominated stress state cannot be predicted with a conventional fracture forming limit diagram. Therefore, stress-based failure models are used as an alternative. These models are describing the fracture of sheet materials based on the failure strain and the stress state. Material-specific parameters must be determined, but a standardised procedure for the calibration of stress-based failure models is currently not established. Most test procedures show non-constant stress paths and varying stress states in the crack initiation area, which leads to uncertainties and inaccuracies for modelling. Therefore, a new test methodology was invented at the IFUM: a prior presented butterfly test rig was extended to enable an online rotation to adapt the loading angle while testing. First, butterfly tests with CP800 were performed for three fixed loading conditions. The tests were modelled numerically with boundary conditions corresponding to the tests. Based on the numerical results, the stress state as well as failure strain were identified and the stress state deviations were calculated. Afterwards, the necessary angular displacements to compensate the stress state deviations for the adaptive test rig were iteratively determined with numerical simulations using an automatised Python script. Finally, the butterfly tests were performed experimentally with the determined adaptive loading angles to identify the specimen failure and compared to the simulations for validation.
MOESM1 of An 18 gene expression-based score classifier predicts the clinical outcome in stage 4 neuroblastoma
Creators: name: Formicola, Daniela
name: Petrosino, Giuseppe
name: Lasorsa, Vito
name: Pignataro, Piero
name: Cimmino, Flora
name: Vetrella, Simona
name: Longo, Luca
name: Tonini, Gian
name: AndrĂŠ Oberthuer
name: Iolascon, Achille
name: Fischer, Matthias
name: Capasso, Mario
Publisher: name: Figshare
Year: 2016
Subjects: subject: Space Science
subject: Medicine
subject: Biotechnology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 80699 Information Systems not elsewhere classified
subject: FOS: Computer and information sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Developmental Biology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences

description: Additional file 1. The supplementary document contains detailed information on the methods used, supplementary figures and tables.
Investigation of the joining zone formation of impact extruded hybrid components by varied forming sequence and partial cooling
Creators: name: Piwek, Armin
name: Peddinghaus, Julius
name: Uhe, Johanna
name: Brunotte, Kai
name: Behrens, Bernd-Arno
Publisher: name: Millersville, PA : Materials Research Forum LLC
Year: 2023
Subjects: subject: Friction Welding
subject: Hot Forging
subject: Joining Zone
subject: Partial Cooling
subject: Tailored Forming
subject: Konferenzschrift
subject: Dewey Decimal Classification::600 | Technik::620 | Ingenieurwissenschaften und Maschinenbau

description: Hybrid material concepts enable the combination of beneficial properties of different materials to extend the limited potential of monolithic components. When it comes to steel and aluminium, a wear-resistant and a lightweight metal are combined to produce a weight-reduced high-performance component with load-adapted areas. A method to create hybrid gear shafts is a novel approach called Tailored Forming. The process chain consists of joining e. g. by friction welding and subsequent impact extrusion under elevated temperature. Before forming, an axial temperature gradient is set in the serial arranged semi-finished products to adjust the different yield stresses of the dissimilar materials through induction heating of the steel part. The subsequent forming is intended to positively influence the joining zone thermo-mechanically and geometrically. However, prior work indicated a limitation of the influence on the joining zone in forward rod extrusion. Therefore, approaches are being researched that enable a stronger formation of the joining zone geometry to influence the resulting bond qualities through surface enlargement. A forward rod extrusion process of friction welded hybrid semi-finished products made of 20MnCr5 (AISI 5120H) combined with EN AW-6082 (AA6082) was carried out experimentally. Complementary to prior investigations, in which mainly the aluminium section was reduced through the die angle followed by the steel, the forming sequence of the materials was reversed to increase the joining zone surface with variation of the forming path. Additionally, a cooling of the aluminium side was realized through an immersion cooling to adjust maximum temperature gradients and further equalize the different yield stresses. Hardness tests, metallographic and SEM images of cross-sections were taken to evaluate the bond quality with regard to the temperature influence, joining zone formation, occurring defects and the resulting intermetallic compound (IMC). Impact extrusion with initially steel formed followed by aluminium resulted in a spherical formation of the joining zone and consequently in greater surface area, but also lead to partial defects in the IMC. The partial cooling of the aluminium allowed higher temperature gradients to be set, thus reducing defects through improved material flow in the joining zone.
Pheidole anastasii
Creators: name: Longino, John T.
name: Cox, Daniel J.
Publisher: name: Zenodo
Year: 2009
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Formicidae
Pheidole
Pheidole anastasii

description: Pheidole anastasii REVISED STATUS
Figure 1, 2, 3
Pheidole anastasii Emery 1896:76. Syntype minor, major worker: Jimenez, Costa Rica [MCSN] (examined). Pheidole bilimeki Mayr: Wilson 2003:378 (incorrect synonymy).
description: Published as part of Longino, John T. & Cox, Daniel J., 2009, Pheidole bilimeki Reconsidered (Hymenoptera: Formicidae), pp. 34-42 in Zootaxa 1985 on page 40, DOI: 10.5281/zenodo.185396
MOESM2 of Effects of intra-articular SHINBARO treatment on monosodium iodoacetate-induced osteoarthritis in rats
Creators: name: Kim, Won
name: Hwa-Jin Chung
name: Pyee, Yuna
name: Choi, Tae
name: Park, Hyen
name: Hong, Ji-Young
name: Joon-Shik Shin
name: Lee, Jin
name: In-Hyuk Ha
name: Lee, Sang
Publisher: name: Figshare
Year: 2016
Subjects: subject: Evolutionary Biology
subject: FOS: Biological sciences
subject: Ecology
subject: 69999 Biological Sciences not elsewhere classified

description: Additional file 2. Animal care and use guidelines.
Extension of the modified Mohr-Coulomb fracture model by a strain rate and temperature dependence
Creators: name: Vasquez Ramirez, Dominyka
name: Wester, Hendrik
name: Rosenbusch, Daniel
name: Behrens, Bernd-Arno
Publisher: name: Millersville, PA : Materials Research Forum LLC
Year: 2023
Subjects: subject: Dual-Phase Steel
subject: Fracture Characterisation
subject: MMC Fracture Model
subject: Konferenzschrift
subject: Dewey Decimal Classification::600 | Technik::620 | Ingenieurwissenschaften und Maschinenbau

description: During industrial sheet metal processes such as shear cutting, high temperatures and strain rates occur. Due to materials dependency on temperature and strain rate, the numerical fracture modelling should consider these both highly influential factors for accurate simulation results. Since the widely used Modified Mohr-Coulomb (MMC) fracture model does not take the dependency on temperature and strain rate into account, the objective of this research is therefore to extend the MMC fracture model. For the fracture characterization, miniaturised tensile tests under variation of specimen geometry, temperature and strain rate are conducted. Additionally, tensile tests with butterfly specimens under varying stress states are carried out. In order to determine material specific MMC parameters, the experimental tests are numerically depicted in Abaqus. The temperature and strain rate extension of the MMC fracture model is based on the Johnson-Cook failure model. With this approach, a temperature and strain-rate dependent MMC fracture model is developed for the dual phase steel DP980.
Ontherus pubens Genier 1996
Creators: name: Rosa, Cecilia Lozano De La
name: Cupello, Mario
name: Vaz-De-Mello, Fernando Z.
Publisher: name: Zenodo
Year: 2024
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Coleoptera
Scarabaeidae
Ontherus
Ontherus pubens

description: Ontherus pubens Génier, 1996
Fig. 58A
Ontherus (Ontherus) pubens Génier, 1996: 71 (original description). Type locality: Ecuador: Napo: Puerto Misahuallí: Reserva Biológica Jatun Sacha, 21 km E of Puerto Napo, 400 m. Name-bearing type: holotype (CMNC), not examined.
Ontherus pubens – Amézquita et al. 1999: 119 (diversity). — Escobar 2000: 209 (list). — Medina et al. 2001: 139 (checklist for Colombia). — Hamel-Leigue et al. 2006: 16 (inventory, cited for Bolivia). — Pulido-Herrera et al. 2007: 307 (list for Andean region, Colombia). — Donoso et al. 2009: Appendix II, 17 (catalogue of types specs at the MQCAZ). — Krajcik 2012: 174 (checklist, cited for Ecuador). — Bezděk & Hájek 2012: 313 (catalogue of type specs). — Ratcliffe et al. 2015: 197 (checklist, cited for Peru).
Ontherus (Ontherus) pubens – Vaz-de-Mello 2000: 194 (checklist for Brazil). — Morón 2006: 121 (catalogue of MXAL types). — Carvajal et al. 2011: 318–319 (cited for Ecuador). — Chamorro et al. 2018: 90, 96, fig. 13e (key, cited for Ecuador); 2019: 177 (catalogue). — Hielkema & Hielkema 2019: 57 (catalogue for the Guianas).
Distribution
Colombia, Venezuela, Brazil, Ecuador, Peru, Bolivia, and Argentina.
Subregions of Venezuela
Plains and Andes mountains.
Literature records
Génier 1996: 71 (Venezuela: Apure and Táchira). — Bezděk & Hájek 2012: 313 (Venezuela: Apure).
description: Published as part of Rosa, Cecilia Lozano De La, Cupello, Mario & Vaz-De-Mello, Fernando Z., 2024, The dung beetles of Venezuela (Coleoptera: Scarabaeidae: Scarabaeinae): catalogue and updated distribution, pp. 1-272 in European Journal of Taxonomy 959 (1) on pages 149-150, DOI: 10.5852/ejt.2024.959.2677, http://zenodo.org/record/13945464
Additional file 4: Figure S4. of Evidence of two distinct functionally specialized fibroblast lineages in breast stroma
Creators: name: Morsing, Mikkel
name: Klitgaard, Marie
name: Jafari, Abbas
name: RenĂŠ Villadsen
name: Moustapha Kassem
name: Petersen, Ole
name: RĂ¸Nnov-Jessen, Lone
Publisher: name: Figshare
Year: 2016
Subjects: subject: Medicine
subject: Cell Biology
subject: Molecular Biology
subject: Biotechnology
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Plant Biology
subject: FOS: Biological sciences

description: Gating strategy to isolate uncultured primary breast MUC1high epithelial cells by FACS. Uncultured primary breast cells from trypsinized organoids were incubated with antibodies against CD271, a marker of myoepithelial cells, and MUC1, a marker of luminal epithelial cells, and analyzed by FACS. The MUC1high cells were selected and isolated as indicated. (PDF 30Â kb)
Addressing the needs of young people living with perinatally-acquired HIV : promoting health through community-based research
Creators: name: Fielden, Sarah
Publisher: name: University of British Columbia
Year: 2010

description: There is a need for community-based tertiary health promoting and risk reduction programs that target the unique psychosocial and developmental issues of adolescents living with HIV in Canada. In a climate of increased accountability, well designed and articulated planning and evaluation research is paramount to securing funding and delivering successful health and psychosocial programs in communities. This dissertation represents a case example whereby research was undertaken to support community action. A qualitative community-based participatory research approach was undertaken to create a health promotion program model for adolescents living with perinatally-acquired HIV in British Columbia, Canada. This process involved a multi-step collaborative partnership process including HIV-infected young people, their family members, their healthcare and service providers, university researchers, and international experts. The major goals were to: collaboratively assess the needs of the adolescents living with HIV in BC; to examine existing evidence in the literature for potential application to program design; to consult with international experts in the field of adolescent HIV care; and to form successful partnerships with various community stakeholders. Methods included in-depth interviews, focus groups, planning committee meetings, and facilitator training sessions, involving over 50 stakeholders. The results from the various chapters included in this dissertation provide an example of the complexity inherent in working with such a ‘hidden’ population of adolescents. They identify priority program needs for the local population of HIV-positive children which include targeting areas of HIV stigma, sexual health, and mental health in adolescence and beyond. They show that partnerships such as this are challenged by factors such as technical, socio-political, and ethical quagmires. Findings from international ‘experts’ demonstrate that services targeting this population require multifaceted strategies for successful programs and that further examination of stigma opens upon a world of silences with intricate functions and meanings. This dissertation is one of the few existing published works that incorporates the use of community-based partnership research and program development with a population of adolescents living with perinatally-acquired HIV. Implementing interdisciplinary, creative and engaging health promoting research strategies is a step towards decreasing inequities through marrying knowledge generation and program development.
Additional file 1: Figures S1 to S12. of Comparative genomics and metabolic profiling of the genus Lysobacter
Creators: name: Bruijn, Irene De
name: Cheng, Xu
name: Jager, Victor De
name: Expรณsito, Ruth
name: Watrous, Jeramie
name: Nrupali Patel
name: Postma, Joeke
name: Dorrestein, Pieter
name: Kobayashi, Donald
name: Raaijmakers, Jos
Publisher: name: Figshare
Year: 2015
Subjects: subject: Space Science
subject: Medicine
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology

description: (PDF 2839 kb)