cometadata/datacite-rtg-text-other-reclassification-records huggingface dataset:
Additional file 1 of Post-abortion family planning use, method preference, and its determinant factors in Eastern Africa: a systematic review and meta-analysis
Creators: name: Bizuneh, Asmamaw Demis
name: Azeze, Getnet Gedefaw
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: FOS: Biological sciences
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Science Policy

description: Additional file 1:. Table S1 PRISMA 2009 Checklist
Additional file 2: of How do researchers conceptualize and plan for the sustainability of their NIH R01 implementation projects?
Creators: name: Alekhya Johnson
name: Moore, Julia
name: Chambers, David
name: Rup, Jennifer
name: Dinyarian, Camellia
name: Straus, Sharon
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Ecology
subject: FOS: Biological sciences
subject: Sociology
subject: FOS: Sociology
subject: 69999 Biological Sciences not elsewhere classified
subject: Science Policy
subject: Computational Biology

description: Appendix B: appendix representing further details on the data collection and analysis for the document review and the qualitative interviews. (DOCX 18 kb)
Additional file 1: of How do researchers conceptualize and plan for the sustainability of their NIH R01 implementation projects?
Creators: name: Alekhya Johnson
name: Moore, Julia
name: Chambers, David
name: Rup, Jennifer
name: Dinyarian, Camellia
name: Straus, Sharon
Publisher: name: figshare
Year: 2019
Subjects: subject: Medicine
subject: Sociology
subject: FOS: Sociology
subject: Science Policy

description: Appendix A: appendix representing the questions used for the semi-structured interview guide. (DOCX 15 kb)
Ephutomorpha aurovestita subsp. pallidinervis Andre 1903
Creators: name: Brothers, Denis J.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mutillidae
Ephutomorpha
Ephutomorpha aurovestita
Ephutomorpha aurovestita pallidinervis andré, 1903

description: Ephutomorpha aurovestita pallidinervis André, 1903; Australia
 [Ephutomorpha aurovestita] var. pallidinervis André, 1903: 269; ♂.
description: Published as part of Brothers, Denis J., 2022, Critical analysis of the type material of Mutillidae described from the Australasian Region (Hymenoptera), pp. 1-215 in Zootaxa 5140 (1) on page 194, DOI: 10.11646/zootaxa.5140.1.1, http://zenodo.org/record/6572181
Additional file 1: of Compliant lower limb exoskeletons: a comprehensive review on mechanical design principles
Creators: name: Sanchez-VillamaĂąan, Maria Del Carmen
name: Gonzalez-Vargas, Jose
name: Torricelli, Diego
name: Moreno, Juan
name: Pons, Jose
Publisher: name: figshare
Year: 2019
Subjects: subject: Molecular Biology
subject: Physiology
subject: FOS: Biological sciences
subject: Biotechnology
subject: 69999 Biological Sciences not elsewhere classified
subject: Developmental Biology
subject: Science Policy

description: Compliant lower limb exoskeletons: A comprehensive review on mechanical design principles. Technical characteristics of 52 compliant exoskeletons reviewed in the article including information about their actuation system, structure, interface attachment components, applicability, control strategies and related publications (PDF 18064 kb)
Node Embedding over Temporal Graphs
Creators: name: Singer, Uriel
name: Guy, Ido
name: Radinsky, Kira
Publisher: name: arXiv
Year: 2019
Subjects: subject: Machine Learning (cs.LG)
subject: Social and Information Networks (cs.SI)
subject: Machine Learning (stat.ML)
subject: FOS: Computer and information sciences

description: In this work, we present a method for node embedding in temporal graphs. We propose an algorithm that learns the evolution of a temporal graph's nodes and edges over time and incorporates this dynamics in a temporal node embedding framework for different graph prediction tasks. We present a joint loss function that creates a temporal embedding of a node by learning to combine its historical temporal embeddings, such that it optimizes per given task (e.g., link prediction). The algorithm is initialized using static node embeddings, which are then aligned over the representations of a node at different time points, and eventually adapted for the given task in a joint optimization. We evaluate the effectiveness of our approach over a variety of temporal graphs for the two fundamental tasks of temporal link prediction and multi-label node classification, comparing to competitive baselines and algorithmic alternatives. Our algorithm shows performance improvements across many of the datasets and baselines and is found particularly effective for graphs that are less cohesive, with a lower clustering coefficient.
Ephutomorpha australasiae
Creators: name: Brothers, Denis J.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mutillidae
Ephutomorpha
Ephutomorpha australasiae

description: Ephutomorpha australasiae (Fabricius, 1804); Australia (incl. Tasmania), Papua New Guinea (New Britain)
 [Mutilla] Australasiae Fabricius, 1804: 433; [♀].
 Mutilla dorsigera Westwood, 1843: 18; ♀; syn. André 1898b: 263.
 Ephutomorpha australasiae (Fabricius, 1804); André 1902b.
 Ephutomorpha (?) australasiasiae (Fabricius, 1804); Bischoff 1932: 73; ♀; unjustified emendation.
description: Published as part of Brothers, Denis J., 2022, Critical analysis of the type material of Mutillidae described from the Australasian Region (Hymenoptera), pp. 1-215 in Zootaxa 5140 (1) on page 194, DOI: 10.11646/zootaxa.5140.1.1, http://zenodo.org/record/6572181
Ephutomorpha azurea
Creators: name: Brothers, Denis J.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mutillidae
Ephutomorpha
Ephutomorpha azurea

description: Ephutomorpha azurea (Mantero, 1900); Papua New Guinea
 M [utilla]. (Eph [uta].) azurea Mantero, 1900: 584; ♂.
 Ephutomorpha azurea (Mantero, 1900); André 1902b.
description: Published as part of Brothers, Denis J., 2022, Critical analysis of the type material of Mutillidae described from the Australasian Region (Hymenoptera), pp. 1-215 in Zootaxa 5140 (1) on page 195, DOI: 10.11646/zootaxa.5140.1.1, http://zenodo.org/record/6572181
Separation Distribution of Vacuum Bubbles in de Sitter Space
Creators: name: Carvalho, Carla
name: Bucher, Martin
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We compute the probability distribution of the invariant separation between nucleation centers of colliding true vacuum bubbles arising from the decay of a false de Sitter space vacuum. We find that even in the limit of a very small nucleation rate per unit Hubble volume the production of widely separated bubble pairs is suppressed. This distribution is of particular relevance for the recently proposed ``colliding bubble braneworld'' scenario, in which the value of Omega_k (the contribution of negative spatial curvature to the cosmological density parameter) is determined by the invariant separation of the colliding bubble pair. We also consider the probability of a collision with a `third' bubble.
description: 15 pages REVTEX, 2 Postscript figures
Remarks on hereditarily indecomposable continua
Creators: name: Hart, Klaas Pieter
name: van Mill, Jan
name: Pol, Roman
Publisher: name: arXiv
Year: 2000
Subjects: subject: General Topology (math.GN)
subject: Logic (math.LO)
subject: FOS: Mathematics
subject: 54F15 (Primary); 54F45, 03B10, 03C98, 54D80 (Secondary)

description: We recall a characterization of hereditary indecomposability originally obtained by Krasinkiewicz and Minc, and show how it may be used to give unified constructions of various hereditarily indecomposable continua. In particular we answer a question asked by Mackowiak and Tymchatyn by showing that any continuum of arbitrary weight is a weakly confluent image of a hereditarily indecomposable continuum of the same weight. We present two methods of constructing these preimages: (a) by model-theoretic means, using the compactness and completeness theorems from first-order logic to derive these results for continua of uncountable weight from their metric counterparts; and (b) by constructing essential mappings from hereditarily indecomposable continua onto Tychonoff cubes. We finish by reviving an argument due to Kelley about hyperspaces of hereditarily indecomposable continua and show how it leads to a point-set argument that reduces Brouwer's Fixed-point theorem to its three-dimensional version.
description: Requires amsart.cls[2000/06/02]; contains one postscript figure
Additional file 1 of Risk factors for nonvisualization of the sentinel lymph node on lymphoscintigraphy in breast cancer patients
Creators: name: Chahid, Youssef
name: Qiu, Xinbo
name: van de Garde, Ewoudt M. W.
name: Verberne, Hein J.
name: Booij, Jan
Publisher: name: figshare
Year: 2021
Subjects: Medicine
Molecular Biology
Cancer
Science Policy

description: Additional file 1. Table S1. Results of univariate analysis for risk factors for sentinel lymph node nonvisualization on lymphoscintigraphy after reinjection of the radiotracer.
Zeros of the Jimbo, Miwa, Ueno tau function
Creators: name: Palmer, John
Publisher: name: arXiv
Year: 1998
Subjects: subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: FOS: Physical sciences

description: We introduce a family of local deformations for meromorphic connections on the Riemann sphere in the neighborhood of a higher rank (simple) singularity. Following a scheme introduced by Malgrange we use these local models to prove that the zeros of the tau function introduced by Jimbo, Miwa and Ueno occur precisely at those points in the deformation space at which a certain Birkhoff-Riemann- Hilbert problem fails to have a solution.
description: 59 pages
Massive string modes and non-singular pre-big-bang cosmology
Creators: name: Maggiore, Michele
Publisher: name: arXiv
Year: 1997
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: High Energy Physics - Theory (hep-th)
subject: FOS: Physical sciences

description: Perturbative $α'$ corrections to the low energy string effective action have been recently found to have a potentially regularizing effect on the singularity of the lowest order pre-big-bang solutions. Whether they actually regularize it, however, cannot be determined working at any finite order in a perturbative expansion in powers of the string constant $α'$, because of scheme dependence ambiguities. Physically, these corrections are dominated by the integration over the first few massive string states. Very massive string modes, instead, can have a regularizing effect which is non-perturbative in $α'$ and which basically comes from the fact that in a gravitational field with Hubble constant $H$ they are produced with an effective Hawking temperature $T=H/(2π)$, and an infinite production rate would occur if this temperature exceeded the Hagedorn temperature. We discuss technical and conceptual difficulties of this non-perturbative regularization mechanism.
description: 25 pages, Latex, 3 figures. Conceptual revisions. To be published in Nucl. Phys. B
Additional file 7: of Characterization of the molecular changes associated with the overexpression of a novel epithelial cadherin splice variant mRNA in a breast cancer model using proteomics and bioinformatics approaches: identification of changes in cell metabolism and an increased expression of lactate dehydrogenase B
Creators: name: Rosso, Marina
name: Lapyckyj, Lara
name: Besso, María
name: Monge, Marta
name: Reventós, Jaume
name: Canals, Francesc
name: Cuenca, Jorge Quevedo
name: Matos, María
name: Vazquez-Levin, Mónica
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: 19999 Mathematical Sciences not elsewhere classified
subject: FOS: Mathematics
subject: Cancer

description: Table S2. Transcripts expression analysis of E-cadherin variant and LDHB in human breast tumor samples. Quantitative expression analysis of E-cadherin variant and LDHB by real time PCR in 21 human breast tumor tissues. Samples were numbered and ordered in an ascending form according with the 2-ΔCt values obtained for the E-cadherin variant mRNA. (DOCX 15 kb)
The Gender and Equal Opportunities Bill: Nigeria’s Track Record of its Commitment to Women’s Rights
Creators: Mohammed, Amal
Publisher: name: Columbia University
Year: 2019
Subjects: Human rights
Women's rights
Equality before the law
International obligations

description: The Nigerian legislature has failed to enact The Gender and Equal Opportunities Bill 2016, a piece of legislation that would domesticate The Convention on the Elimination of All Forms of Discrimination Against Women in Nigeria. Strong religious and cultural convictions, misunderstanding of the notion of gender equality, and poor strategic approaches from civil society organizations, have contributed to this result. In order to ensure that Nigeria is meeting its international obligations, it is important for advocates of the bill from the legislature and civil society to adapt their strategies so that they are better suited at targeting the factors that are directly hindering the success of the bill.
Additional file 5 of Risk factors for the development of neonatal sepsis in a neonatal intensive care unit of a tertiary care hospital of Nepal
Creators: name: Manandhar, Sulochana
name: Amatya, Puja
name: Ansari, Imran
name: Joshi, Niva
name: Maharjan, Nhukesh
name: Dongol, Sabina
name: Basnyat, Buddha
name: Dixit, Sameer M.
name: Baker, Stephen
name: Karkey, Abhilasha
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 5.
Ephutomorpha bicolorata
Creators: name: Brothers, Denis J.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mutillidae
Ephutomorpha
Ephutomorpha bicolorata

description: Ephutomorpha bicolorata (Smith, 1879); Australia
 Mutilla bicolorata Smith, 1879: 206; ♀.
 Mutilla (Sphaerophthalma [sic]) bicolorata; André 1895.
 Ephutomorpha bicolorata (Smith, 1879); André 1902b.
description: Published as part of Brothers, Denis J., 2022, Critical analysis of the type material of Mutillidae described from the Australasian Region (Hymenoptera), pp. 1-215 in Zootaxa 5140 (1) on page 195, DOI: 10.11646/zootaxa.5140.1.1, http://zenodo.org/record/6572181
Small x behavior of the slope dlnF_2/dln(1/x) in the framework of perturbative QCD
Creators: name: Kotikov, A. V.
name: Parente, G.
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: Using an analytical parameterization for the behavior of the x slope of the structure function F_2 at small x in perturbative QCD, at the leading twist approximation of the Wilson operator product expansion, and applying a flat initial condition in the DGLAP evolution equations, we found very good agreement with new precise deep inelastic scattering experimental data from HERA.
description: 13 pages, 3 figures, latex
Additional file 6: of Characterization of the molecular changes associated with the overexpression of a novel epithelial cadherin splice variant mRNA in a breast cancer model using proteomics and bioinformatics approaches: identification of changes in cell metabolism and an increased expression of lactate dehydrogenase B
Creators: name: Rosso, Marina
name: Lapyckyj, Lara
name: Besso, María
name: Monge, Marta
name: Reventós, Jaume
name: Canals, Francesc
name: Cuenca, Jorge Quevedo
name: Matos, María
name: Vazquez-Levin, Mónica
Publisher: name: figshare
Year: 2019
Subjects: subject: Biochemistry
subject: Medicine
subject: Cell Biology
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Cancer
subject: Plant Biology
subject: Computational Biology

description: Table S1. Histological and molecular characteristics of breast tumor tissue samples. Description table in which the histological type and grade, the presence or absence of metastasis, the expression pattern of ER, PR and HER2, the percentage (%) of Ki-67 staining, as well as the molecular subtype of 21 breast tumor tissues, are detailed. (DOCX 17 kb)
Ephutomorpha biplagiata
Creators: name: Brothers, Denis J.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mutillidae
Ephutomorpha
Ephutomorpha biplagiata

description: Ephutomorpha biplagiata (André, 1898); Australia
 Mutilla biplagiata André, 1898: 268; ♀.
 Ephutomorpha biplagiata (André, 1898); André 1902b.
description: Published as part of Brothers, Denis J., 2022, Critical analysis of the type material of Mutillidae described from the Australasian Region (Hymenoptera), pp. 1-215 in Zootaxa 5140 (1) on page 195, DOI: 10.11646/zootaxa.5140.1.1, http://zenodo.org/record/6572181
ДАВЛАТ ДАРОМАДИГА ЎТКАЗИЛАДАН МОЛ-МУЛКЛАРНИ СОТИШ ТАРТИБЛАРИ ҲАМДА ҲУҚУҚИЙ АСОСЛАРИ. САВДО ТАШКИЛОТЛАРИ ФАОЛИЯТИ.
Creators: name: Арзиев, Ахрорбек
Publisher: name: Zenodo
Year: 2024

description: Кўпчиликда суднинг қарори билан давлат даромадига ўтказилиши белгиланган мол-мулкларни ёки ижро ҳаракатлари давомида хатланган товарларни сотиш ким томонидан ва қандай асосларда амалга оширилиши бўйича саволлар бўлиши табиий. Чунки бу кўпчилик учун маълум бўлмаган жараёндир.
Additional file 3 of The derepression of transposable elements in lung cells is associated with the inflammatory response and gene activation in idiopathic pulmonary fibrosis
Creators: name: Rostami, Mahboubeh R.
name: Bradic, Martina
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 3: Supplemental Figure 3. Feature plot of the expressed cell markers for the cell-type identification in the UMAP plot. The cell types are classified as epithelial cells (alveolar type II cells (AT2), alveolar type I cells (AT1), ciliated cells, basal cells, and club cells), immune cells (alveolar macrophages (AM), monocytes, B cells, plasma mast cells, dendritic cells, and T cells), and mesenchymal cells (fibroblasts and endothelial cells).
Multiscale Analysis of Discrete Nonlinear Evolution Equations
Creators: name: Leon, J.
name: Manna, M.
Publisher: name: arXiv
Year: 1999
Subjects: subject: Exactly Solvable and Integrable Systems (nlin.SI)
subject: FOS: Physical sciences

description: The method of multiscale analysis is constructed for dicrete systems of evolution equations for which the problem is that of the far behavior of an input boundary datum. Discrete slow space variables are introduced in a general setting and the related finite differences are constructed. The method is applied to a series of representative examples: the Toda lattice, the nonlinear Klein-Gordon chain, the Takeno system and a discrete version of the Benjamin-Bona-Mahoney equation. Among the resulting limit models we find a discrete nonlinear Schroedinger equation (with reversed space-time), a 3-wave resonant interaction system and a discrete modified Volterra model.
description: published in J. Phys. A : Math. Gen. 32 (1999) 927-943
Additional file 4 of Risk factors for the development of neonatal sepsis in a neonatal intensive care unit of a tertiary care hospital of Nepal
Creators: name: Manandhar, Sulochana
name: Amatya, Puja
name: Ansari, Imran
name: Joshi, Niva
name: Maharjan, Nhukesh
name: Dongol, Sabina
name: Basnyat, Buddha
name: Dixit, Sameer M.
name: Baker, Stephen
name: Karkey, Abhilasha
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 4.
Ephutomorpha biroi Andre 1905
Creators: name: Brothers, Denis J.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mutillidae
Ephutomorpha
Ephutomorpha biroi

description: Ephutomorpha biroi André, 1905; Papua New Guinea
 Ephutomorpha Birói André, 1905: 273; ♀.
description: Published as part of Brothers, Denis J., 2022, Critical analysis of the type material of Mutillidae described from the Australasian Region (Hymenoptera), pp. 1-215 in Zootaxa 5140 (1) on page 195, DOI: 10.11646/zootaxa.5140.1.1, http://zenodo.org/record/6572181
Allantus tonkinensis Mocsary 1909
Creators: name: Taeger, Andreas
Publisher: name: Zenodo
Year: 2013
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Tenthredinidae
Allantus
Allantus tonkinensis

description: Allantus tonkinensis Mocsáry, 1909
A valid species, Tenthredo tonkinensis (Mocsáry, 1909).
TYPES. Allantus tonkinensis Mocsáry, 1909: 24. Syntype (s) Ƥ, “ Tonkin: Montes Mauson,[...], in altitudine 2–3000 pedum ”. Lectotype Ƥ, designated by Shinohara, 1998. Type locality: “ Tonkin: Montes Mauson, 2–3000’ ” [= Vietnam, Mau Son mountains]. Examined.
description: Published as part of Taeger, Andreas, 2013, The type specimens of Tenthredo Linnaeus, 1758 (Hymenoptera: Tenthredinidae) deposited in the Hungarian Natural History Museum, pp. 201-244 in Zootaxa 3626 (2) on page 232, DOI: 10.11646/zootaxa.3626.2.1, http://zenodo.org/record/248049
Additional file 3 of Risk factors for the development of neonatal sepsis in a neonatal intensive care unit of a tertiary care hospital of Nepal
Creators: name: Manandhar, Sulochana
name: Amatya, Puja
name: Ansari, Imran
name: Joshi, Niva
name: Maharjan, Nhukesh
name: Dongol, Sabina
name: Basnyat, Buddha
name: Dixit, Sameer M.
name: Baker, Stephen
name: Karkey, Abhilasha
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 3.
MOESM8 of Unraveling essential cellulosomal components of the (Pseudo)Bacteroides cellulosolvens reveals an extensive reservoir of novel catalytic enzymes
Creators: name: Zhivin-Nissan, Olga
name: Bareket Dassa
name: Ely Morag
name: Kupervaser, Meital
name: Levin, Yishai
name: Bayer, Edward
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Genetics
subject: FOS: Biological sciences
subject: Molecular Biology
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry
subject: Computational Biology

description: Additional file 8: Table S5. Selected clusters of genes coding CAZyme proteins. The intensities of all the proteins in four cellulosomal fractions (CB I, CB II, MCC I and MCC II) were estimated by iBAQ and LFQ methods in order to evaluate their quantity and abundance. The table shows the expression intensities of clustered proteins represented in Fig.Â 6.
Additional file 2 of The derepression of transposable elements in lung cells is associated with the inflammatory response and gene activation in idiopathic pulmonary fibrosis
Creators: name: Rostami, Mahboubeh R.
name: Bradic, Martina
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 2: Supplemental Figure 2. L1HS intergenic expression in Donor and IPF samples as quantified by SQuIRE method. Green: donor samples. Red: IPF samples. The x-axis represents groups, while the y-axis represents log normalized expression values for counts from all intergenic L1HS loci (see Materials and Methods). The L1HS between the groups is not significantly different as determined by DESeq2 analysis (p = 0.037, p.adjust =0.11).
Ephutomorpha bivulnerata
Creators: name: Brothers, Denis J.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mutillidae
Ephutomorpha
Ephutomorpha bivulnerata

description: Ephutomorpha bivulnerata (André, 1902); Australia, New Zealand (North Island introduced)
 Mutilla bivulnerata André, 1902: 470; ♀.
 Ephutomorpha bivulnerata (André, 1902); André 1902b; Valentine & Walker 1983.
description: Published as part of Brothers, Denis J., 2022, Critical analysis of the type material of Mutillidae described from the Australasian Region (Hymenoptera), pp. 1-215 in Zootaxa 5140 (1) on page 195, DOI: 10.11646/zootaxa.5140.1.1, http://zenodo.org/record/6572181
A flexible model-free prediction-based framework for feature ranking
Creators: name: Li, Jingyi Jessica
name: Chen, Yiling
name: Tong, Xin
Publisher: name: arXiv
Year: 2019
Subjects: subject: Methodology (stat.ME)
subject: FOS: Computer and information sciences

description: Despite the availability of numerous statistical and machine learning tools for joint feature modeling, many scientists investigate features marginally, i.e., one feature at a time. This is partly due to training and convention but also roots in scientists' strong interests in simple visualization and interpretability. As such, marginal feature ranking for some predictive tasks, e.g., prediction of cancer driver genes, is widely practiced in the process of scientific discoveries. In this work, we focus on marginal ranking for binary prediction, the arguably most common predictive tasks. We argue that the most widely used marginal ranking criteria, including the Pearson correlation, the two-sample t test, and two-sample Wilcoxon rank-sum test, do not fully take feature distributions and prediction objectives into account. To address this gap in practice, we propose two ranking criteria corresponding to two prediction objectives: the classical criterion (CC) and the Neyman-Pearson criterion (NPC), both of which use model-free nonparametric implementations to accommodate diverse feature distributions. Theoretically, we show that under regularity conditions both criteria achieve sample-level ranking consistent with their population-level counterpart with high probability. Moreover, NPC is robust to sampling bias when the two class proportions in a sample deviate from those in the population. This property endows NPC good potential in biomedical research where sampling bias is common. We demonstrate the use and relative advantages of CC and NPC in simulation and real data studies. Our model-free objective-based ranking idea is extendable to ranking feature subsets and generalizable to other prediction tasks and learning objectives.
Higgs-Mediated Electric Dipole Moments in the MSSM: An Application to Baryogenesis and Higgs Searches
Creators: name: Pilaftsis, Apostolos
Publisher: name: arXiv
Year: 2002
Subjects: subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: We perform a comprehensive study of the dominant two- and higher-loop contributions to the $^{205}$Tl, neutron and muon electric dipole moments induced by Higgs bosons, third-generation quarks and squarks, charginos and gluinos in the Minimal Supersymmetric Standard Model (MSSM). We find that strong correlations exist among the contributing CP-violating operators, for large stop, gluino and chargino phases, and for a wide range of values of $\tanβ$ and charged Higgs-boson masses, giving rise to large suppressions of the $^{205}$Tl and neutron electric dipole moments below their present experimental limits. Based on this observation, we discuss the constraints that the non-observation of electric dipole moments imposes on the radiatively-generated CP-violating Higgs sector and on the mechanism of electroweak baryogenesis in the MSSM. We improve previously suggested benchmark scenarios of maximal CP violation for analyzing direct searches of CP-violating MSSM Higgs bosons at high-energy colliders, and stress the important complementary rôle that a possible high-sensitivity measurement of the muon electric dipole moment to the level of $10^{-24}$ $e$ cm can play in such analyses.
description: 34 pages, one reference added, version as to appear in Nuclear Physics B
MOESM7 of Unraveling essential cellulosomal components of the (Pseudo)Bacteroides cellulosolvens reveals an extensive reservoir of novel catalytic enzymes
Creators: name: Zhivin-Nissan, Olga
name: Bareket Dassa
name: Ely Morag
name: Kupervaser, Meital
name: Levin, Yishai
name: Bayer, Edward
Publisher: name: figshare
Year: 2019
Subjects: subject: Biophysics
subject: Biochemistry
subject: Space Science
subject: 29999 Physical Sciences not elsewhere classified
subject: FOS: Physical sciences
subject: Microbiology
subject: FOS: Biological sciences
subject: Genetics
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: 69999 Biological Sciences not elsewhere classified
subject: Inorganic Chemistry

description: Additional file 7: Table S4. Mass spectrometry analysis of normalized GH-containing proteins. The intensities of all the proteins in four cellulosomal fractions (CB I, CB II, MCC I and MCC II) were estimated by iBAQ and LFQ methods, in order to evaluate their quantity and abundance. The iBAQ intensities were normalized by dividing each value by that of the major primary scaffoldin ScaA1 in each sample, in order to facilitate interpretation of the results and relate the cellulosomal proteins to the major primary scaffoldin within the samples. The LFQ intensities were normalized by dividing the values by the ScaA1 intensity of CB I in order to simplify the fold-change analysis between the different samples. The table shows 102 identified GH-containing proteins. CB, cellobiose; MCC, microcrystalline cellulose; Doc, dockerin; GH, glycoside hydrolase; CBM, carbohydrate-binding module; CE, carbohydrate esterase; PL, polysaccharide lyases; SLH, S-layer homology module. Significant iBAQ values (â Ľ0.10) are shown in bold.
Additional file 2 of Risk factors for the development of neonatal sepsis in a neonatal intensive care unit of a tertiary care hospital of Nepal
Creators: name: Manandhar, Sulochana
name: Amatya, Puja
name: Ansari, Imran
name: Joshi, Niva
name: Maharjan, Nhukesh
name: Dongol, Sabina
name: Basnyat, Buddha
name: Dixit, Sameer M.
name: Baker, Stephen
name: Karkey, Abhilasha
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 2.
The Geographic Distribution of Pedestrian Safety Projects In New York City: What Social Equity Implications?
Creators: Lu, Jimmy
Publisher: name: Columbia University
Year: 2013
Subjects: Equality--Health aspects
Pedestrians--Safety measures
Transportation--Planning

description: This thesis examines whether the geographic distribution of pedestrian safety projects that the New York City Department of Transportation (NYC DOT) has planned and implemented since 2008 is equitable. The research builds on observations that low-income and minority populations are overrepresented among pedestrian crash victims and on the fact that areas where such groups live are more prone to crashes. It also adopts the standpoint that pedestrian safety projects can and should reduce such disparities. Consequently, it asks whether roadways in community districts (CDs) in the New York City Inner Ring with higher proportions of low-income, minority, and car-less populations have higher or lower shares of pedestrian safety elements. Borrowing part of Rodgers et al.’s methodology, it uses correlation and regression analyses to measure the relations between different social equity indicators with an index based on the densities of pedestrian safety projects. It found that CDs where such populations were more important also had higher densities of pedestrian safety projects, in other words that the geographic distribution of pedestrian safety projects is equitable. Such results should however be interpreted with caution due to the small sample size and the resulting statistically insignificant results. This study recommends that transportation agencies further reduce socioeconomic disparities in pedestrian crashes and explicitly define the social equity criteria that factor into their planning decisions and monitor their achievements in addressing social equity.
The Geography of Resettlement: Housing and Employment Trajectories in Diverse Urban Destinations
Creators: Book, Rebecca Rand
Publisher: name: Columbia University
Year: 2017
Subjects: City planning
Land settlement
Housing
Refugees--Housing

description: Previous research has demonstrated that urban context significantly affects refugees’ access to suitable housing and jobs, however little research has been done into how sites for resettlement are selected. In the United States, this is a decentralized process which relies on actors on several scales, each of which are driven by markedly different aims. Voluntary Agencies identify and prepare a suitable housing unit for the family before they arrive. These are ideologically driven, largely faith based organizations, who contract with the federal government. On the local level, resettlement is supported by preexisting institutions, who offer language classes or job training, and local politicians who choose to advocate for refugees in their town. The driver for these actors is largely economic. Federal quotas for refugees to be admitted are largely determined by politics.
       Through interviews refugee resettlement professionals and analysis of American Community Survey data, I will describe The way in which these 3 actors interact to determine the location and type of housing provided to a refugee upon their arrival to the United States. This story varies significantly based on the type of city in which a family is placed. Large cosmopolitan gateway cities with a long history of integrating refugees offer a well established resettlement infrastructure and ethnic communities to provide support for refugees, but come with high rents. Therefore, the geography of resettlement has shifted to emerging gateways in suburban municipalities with budding communities of recent refugees. Many recent refugees have no existing ethnic communities in the US to join, and are placed in pre-emerging gateway cities with limited foreign born population.
       These different environments offer distinctly different pathways to finding housing and becoming an economically self sufficient member of American society, however analysis of ACS data demonstrates that within a few years of their arrival refugees learn English, and demonstrate higher rates of business ownership and employment than Native Born Americans. As their income grows steadily with increased time spent in the U.S., refugees become important members of their local community, contributing to the local tax base, renovating abandoned homes, and diligently completing jobs that are not in high demand among native born workers.
Informed Machine Learning -- A Taxonomy and Survey of Integrating Knowledge into Learning Systems
Creators: name: von Rueden, Laura
name: Mayer, Sebastian
name: Beckh, Katharina
name: Georgiev, Bogdan
name: Giesselbach, Sven
name: Heese, Raoul
name: Kirsch, Birgit
name: Pfrommer, Julius
name: Pick, Annika
name: Ramamurthy, Rajkumar
name: Walczak, Michal
name: Garcke, Jochen
name: Bauckhage, Christian
name: Schuecker, Jannis
Publisher: name: arXiv
Year: 2019
Subjects: subject: Machine Learning (stat.ML)
subject: Artificial Intelligence (cs.AI)
subject: Machine Learning (cs.LG)
subject: FOS: Computer and information sciences

description: Despite its great success, machine learning can have its limits when dealing with insufficient training data. A potential solution is the additional integration of prior knowledge into the training process which leads to the notion of informed machine learning. In this paper, we present a structured overview of various approaches in this field. We provide a definition and propose a concept for informed machine learning which illustrates its building blocks and distinguishes it from conventional machine learning. We introduce a taxonomy that serves as a classification framework for informed machine learning approaches. It considers the source of knowledge, its representation, and its integration into the machine learning pipeline. Based on this taxonomy, we survey related research and describe how different knowledge representations such as algebraic equations, logic rules, or simulation results can be used in learning systems. This evaluation of numerous papers on the basis of our taxonomy uncovers key methods in the field of informed machine learning.
description: Accepted at IEEE Transactions on Knowledge and Data Engineering: https://ieeexplore.ieee.org/document/9429985
Additional file 1 of The derepression of transposable elements in lung cells is associated with the inflammatory response and gene activation in idiopathic pulmonary fibrosis
Creators: name: Rostami, Mahboubeh R.
name: Bradic, Martina
Publisher: name: figshare
Year: 2021
Subjects: subject: Genetics
subject: FOS: Biological sciences

description: Additional file 1: Supplemental Figure 1. Reproduced changes in the expression of TE families in individual cell types and whole-lung tissue obtained by REdiscoverTE method. A. Bulk RNA-seq of WL. B. Bulk RNA-seq of AT2 cells. C. Bulk RNA-seq of AM. The TE expression was determined by read counts using the REdiscoverTE workflow, and the differential expression analysis was performed using the DESeq2 package in R. The x-axis represents the log2 ratio of the TE subfamily expression between the IPF patients and the donors. The y-axis represents the adjusted p-value based on -log10. The red color represents the TE subfamilies with a fold expression change (FC) > 1 and p.adjust 1. The black colors represent changes that do not have a significant p.adjust value or an FC higher than 1. Different shapes represent different TE families.
Additional file 1: of Temporal variation of ecosystem carbon pools along altitudinal gradient and slope: the case of Chilimo dry afromontane natural forest, Central Highlands of Ethiopia
Creators: name: Mehari Tesfaye
name: Gardi, Oliver
name: Tesfaye Bekele
name: JĂźrgen Blaser
Publisher: name: figshare
Year: 2019
Subjects: subject: 59999 Environmental Sciences not elsewhere classified
subject: FOS: Earth and related environmental sciences
subject: 39999 Chemical Sciences not elsewhere classified
subject: FOS: Chemical sciences
subject: Ecology
subject: FOS: Biological sciences
subject: 69999 Biological Sciences not elsewhere classified

description: Table S1. Ecosystem carbon accumulation potential of Chilimo dry afromontane forest 2012 and 2017. (DOCX 47 kb)
Ephutomorpha blanda
Creators: name: Brothers, Denis J.
Publisher: name: Zenodo
Year: 2022
Subjects: Biodiversity
Taxonomy
Animalia
Arthropoda
Insecta
Hymenoptera
Mutillidae
Ephutomorpha
Ephutomorpha blanda

description: Ephutomorpha blanda (Erichson, 1842); Australia (Tasmania)
 Mutilla blanda Erichson, 1842: 262; ♀.
 Mutilla concinna Westwood, 1843: 19; ♀; syn. Turner 1914: 436.
 Ephutomorpha blanda (Erichson, 1842); André 1902b.
 Ephutomorpha concinna (Westwood, 1843); André 1902b.
description: Published as part of Brothers, Denis J., 2022, Critical analysis of the type material of Mutillidae described from the Australasian Region (Hymenoptera), pp. 1-215 in Zootaxa 5140 (1) on page 195, DOI: 10.11646/zootaxa.5140.1.1, http://zenodo.org/record/6572181
Theta bases and log Gromov-Witten invariants of cluster varieties
Creators: name: Mandel, Travis
Publisher: name: arXiv
Year: 2019
Subjects: subject: Algebraic Geometry (math.AG)
subject: FOS: Mathematics
subject: 14J33 (Primary) 14N35, 13F60 (Secondary)

description: Using heuristics from mirror symmetry, combinations of Gross, Hacking, Keel, Kontsevich, and Siebert have given combinatorial constructions of canonical bases of "theta functions" on the coordinate rings of various log Calabi-Yau spaces, including cluster varieties. We prove that the theta bases for cluster varieties are determined by certain descendant log Gromov-Witten invariants of the symplectic leaves of the mirror/Langlands dual cluster variety, as predicted in the Frobenius structure conjecture of Gross-Hacking-Keel. We further show that these Gromov-Witten counts are often given by naive counts of rational curves satisfying certain geometric conditions. As a key new technical tool, we introduce the notion of "contractible" tropical curves when showing that the relevant log curves are torically transverse.
description: 36 pages, 2 figures; published version
On the parametrization of the distributions of depth of shower maximum of ultra-high energy extensive air showers
Creators: name: Arbeletche, Luan
name: de Souza, Vitor
Publisher: name: arXiv
Year: 2019
Subjects: subject: High Energy Astrophysical Phenomena (astro-ph.HE)
subject: High Energy Physics - Phenomenology (hep-ph)
subject: FOS: Physical sciences

description: The distribution of depth in which a cosmic ray air shower reaches its maximum number of particles ($X_{max}$) is studied and parametrized. Three functions are studied for proton, carbon, silicon, and iron primary particles with energies ranging from $10^{17}$ eV to $10^{20}$ eV for three hadronic interaction models: EPOS-LHC, QGSJetII.04, and Sibyll2.3c. The function which best describes the $X_{max}$ distribution of a mixed composition is also studied. A very large number of simulated showers and a detailed analysis procedure were used to guarantee negligible effects of undersampling and of fitting in the final results. For the first time, a comparison of several functions is presented under the same assumption with the intention of selecting the best functional form to describe the $X_{max}$ distribution. The Generalized Gumbel distribution is shown to be the best option for a general description of all cases. The Log-normal distribution is also a good choice for some cases while the Exponentially Modified Gaussian distribution has shown to be the worst choice in almost all cases studied. All three functions are parametrized as a function of energy and primary mass.
description: In this version, an appendix was added comprising an updated parametrization with the inclusion of helium primaries in the simulation library
Additional file 1 of Risk factors for the development of neonatal sepsis in a neonatal intensive care unit of a tertiary care hospital of Nepal
Creators: name: Manandhar, Sulochana
name: Amatya, Puja
name: Ansari, Imran
name: Joshi, Niva
name: Maharjan, Nhukesh
name: Dongol, Sabina
name: Basnyat, Buddha
name: Dixit, Sameer M.
name: Baker, Stephen
name: Karkey, Abhilasha
Publisher: name: figshare
Year: 2021
Subjects: subject: Medicine
subject: Cell Biology
subject: Biotechnology
subject: Immunology
subject: FOS: Clinical medicine
subject: Developmental Biology
subject: Cancer
subject: Hematology
subject: 110309 Infectious Diseases
subject: FOS: Health sciences
subject: Computational Biology

description: Additional file 1.
Integrable Multidimensional Cosmology for Intersecting $p$-Branes
Creators: name: Bronnikov, K. A.
name: Grebeniuk, M. A.
name: Ivashchuk, V. D.
name: Melnikov, V. N.
Publisher: name: arXiv
Year: 1997
Subjects: subject: General Relativity and Quantum Cosmology (gr-qc)
subject: FOS: Physical sciences

description: A multidimensional field model describing the behaviour of (at most) one Einstein space of non-zero curvature and n Ricci-flat internal spaces is considered. The action contains several dilatonic scalar fields and antisymmetric forms. The problem setting covers various problems with field dependence on a single space-time coordinate, in particular, isotropic and anisotropic homogeneous cosmologies. When the forms are chosen to be proportional to volume forms of p-brane factor spaces, a Toda-like Lagrange representation arises. Exact solutions are obtained when the p-brane dimensions and the dilatonic couplings obey some orthogonality conditions. General features and some special cases of cosmological solutions are discussed. It is shown, in particular, that all hyperbolic models with a 3-dimensional external space possess an asymptotic with the external scale factor a(t) is proportional to |t| (the cosmic time), while all internal scale factors and all scalar fields tend to finite limits. For D=11 a family of models with one 5-brane and three 2-branes is described.
description: 8 pages, Latex, 1 Latex figure uzing bezier
The Genetic Architecture of Alopecia Areata
Creators: Petukhova, Lynn Meredith
Publisher: name: Columbia University
Year: 2013
Subjects: subject: Epidemiology
subject: Genetics
subject: FOS: Biological sciences

description: Alopecia areata (AA) is the most prevalent autoimmune disease in the US. With An estimated lifetime risk of 1.7%, it affects both genders with similar frequencies and people of all ages. AA affects more individuals than most other autoimmune diseases combined, and yet despite its prevalence, there is an enormous unmet medical need, in part due to the dearth of information about the underlying pathogenesis. In AA, autoimmunity arises against the hair follicles in the skin, which causes hair loss associated with an aberrant accumulation of immune-response cells around the affected hair follicles. Evidence supporting a genetic basis for AA stems from multiple lines of research, including increased risk of disease in first degree relatives, twin studies, and more recently, our initial family-based linkage study and genome wide association study (GWAS) in a cohort of unrelated individuals. Importantly, our GWAS identified a set of 16 statistically independent risk haplotypes across 8 loci, implicating specific genes that increase risk of AA, all of which have been validated. Genome wide genetic studies can provide critical insight into disease mechanisms, especially when little is known about the underlying causes of disease. In this study, I use complementary gene mapping methods, performing one study in a cohort of families and a second study in a cohort of unrelated cases and controls. Using these two approaches, I obtain new evidence about the genetic influences on AA. Our family cohort contains statistically significant evidence for linkage at a new locus, on chromosome 2q36.1-q37.3 (LOD=4.17) and family-based tests of association implicate 47 genes. I then conducted a GWAS that expanded our initial cohort with the addition of 800 cases and obtained statistically significant evidence for a new locus at chromosome 16p13.13 (p=4.6x10-7). This region has been implicated in several other autoimmune diseases and contains several genes that are known to be involved with immune processes. Taken together, these two studies demonstrate the presence of both rare and common variants are contributing to AA etiology and support emerging evidence that suggests the genetic architecture of common complex diseases involves both rare and common variants.